Citrus Sinensis ID: 012143
Local Sequence Feature Prediction
| Prediction and (Method) | Result |
|---|
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Close Homologs for Annotation Transfer
Close Homologs in SWISS-PROT Database Detected by BLAST 
Original result of BLAST against SWISS-PROT Database
| ID | Alignment graph | Length |
Definition |
RBH(Q2H) |
RBH(H2Q) |
Q cover |
H cover |
Identity |
E-value |
| Query | 470 | 2.2.26 [Sep-21-2011] | |||||||
| Q9M8Y0 | 977 | Probable UDP-N-acetylgluc | no | no | 0.480 | 0.231 | 0.234 | 9e-06 | |
| Q3UV71 | 942 | Transmembrane and TPR rep | yes | no | 0.608 | 0.303 | 0.217 | 0.0001 | |
| Q9FNS4 | 662 | PsbB mRNA maturation fact | N/A | no | 0.431 | 0.306 | 0.195 | 0.0003 | |
| O94474 | 1389 | Superkiller protein 3 OS= | yes | no | 0.319 | 0.107 | 0.252 | 0.0005 | |
| Q8CGY8 | 1046 | UDP-N-acetylglucosamine-- | no | no | 0.285 | 0.128 | 0.245 | 0.0007 | |
| O15294 | 1046 | UDP-N-acetylglucosamine-- | yes | no | 0.285 | 0.128 | 0.245 | 0.0008 | |
| P56558 | 1036 | UDP-N-acetylglucosamine-- | no | no | 0.285 | 0.129 | 0.245 | 0.0008 | |
| P81436 | 1046 | UDP-N-acetylglucosamine-- | yes | no | 0.285 | 0.128 | 0.245 | 0.0008 | |
| Q27HV0 | 1046 | UDP-N-acetylglucosamine-- | yes | no | 0.285 | 0.128 | 0.245 | 0.0008 |
| >sp|Q9M8Y0|SEC_ARATH Probable UDP-N-acetylglucosamine--peptide N-acetylglucosaminyltransferase SEC OS=Arabidopsis thaliana GN=SEC PE=2 SV=1 | Back alignment and function desciption |
|---|
Score = 52.0 bits (123), Expect = 9e-06, Method: Compositional matrix adjust.
Identities = 62/264 (23%), Positives = 109/264 (41%), Gaps = 38/264 (14%)
Query: 72 PKNAHAHFLLGLMYQRLGQPLKAVSSYEKAEEILLRCEADIARPELLSLVQIHHAQCLLP 131
P A+ LG +Y+ LG+P +A+ Y+ A + +R + +A + S+
Sbjct: 254 PAFPDAYLNLGNVYKALGRPTEAIMCYQHA--LQMRPNSAMAFGNIASIY---------- 301
Query: 132 ESSGDNSLDKELEPEELEEILSKLKESMQSDTRQAVVWNTLGLILLKSGRLQSSISVLSS 191
E +L+ + K+++ D R +N LG L GR+ ++ +
Sbjct: 302 -----------YEQGQLDLAIRHYKQALSRDPRFLEAYNNLGNALKDIGRVDEAVRCYNQ 350
Query: 192 LLAVDPNNCDCIGNLGIAYFQSGDMEQSAKCFQDLI-----LKDQNHPAALI-----NYA 241
LA+ PN+ + NLG Y + M ++ F+ + L + A+I NY+
Sbjct: 351 CLALQPNHPQAMANLGNIYMEWNMMGPASSLFKATLAVTTGLSAPFNNLAIIYKQQGNYS 410
Query: 242 ALLLCKYGSVLA----GAGANTGEGACLDQASAVNVAKECLLAALKADPKAAHIWANLAN 297
+ C Y VL A A G + V A + + A+ P A ANLA+
Sbjct: 411 DAISC-YNEVLRIDPLAADALVNRGNTYKEIGRVTEAIQDYMHAINFRPTMAEAHANLAS 469
Query: 298 AYYLTGDHRSSGKCLEKAAKLEPN 321
AY +G ++ ++A L P+
Sbjct: 470 AYKDSGHVEAAITSYKQALLLRPD 493
|
O-linked N-acetylglucosamine transferase (OGT) that mediates O-glycosylation of capsid protein (CP) of virus in case of infection by Plum pox virus. OGTs catalyze the addition of nucleotide-activated sugars directly onto the polypeptide through O-glycosidic linkage with the hydroxyl of serine or threonine. Probably acts by adding O-linked sugars to yet unknown proteins. Its OGT activity has been proved in vitro but not in vivo. Required with SPY for gamete and seed development. Arabidopsis thaliana (taxid: 3702) EC: 2EC: .EC: 4EC: .EC: 1EC: .EC: - |
| >sp|Q3UV71|TMTC1_MOUSE Transmembrane and TPR repeat-containing protein 1 OS=Mus musculus GN=Tmtc1 PE=2 SV=2 | Back alignment and function description |
|---|
Score = 48.5 bits (114), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 73/336 (21%), Positives = 134/336 (39%), Gaps = 50/336 (14%)
Query: 146 EELEEILSKLKESMQSDTRQAVVWNTLGLILLKSGRLQSSISVLSSLLAVDPNNCDCIGN 205
E+ EE + LKES++ A +++L +L + R + + + + + P++ D N
Sbjct: 622 EKTEEAIMLLKESIKYGPDFADAYSSLASLLAEQERFKEAEDIYQAGIKNCPDSSDLHNN 681
Query: 206 LGIAYFQSGDMEQSAKCFQDLILKDQNHPAALINYAALLLCKYGSVLAGAGANTGEGACL 265
+ SG E++ +Q I +H A++N G + G N+
Sbjct: 682 YAVFLVDSGFPEKAVAHYQQAIQLSPSHHVAVVNL--------GRLYRSLGENSK----- 728
Query: 266 DQASAVNVAKECLLAALKADPKAAHIWANLANAYYLTGDHRSSGKCLEKAAKLEPNCMST 325
A+E ALK + A + + L YY TG H+ + + +A L+P+
Sbjct: 729 --------AEEWYRRALKVA-RTAEVLSPLGALYYNTGRHKEALEVYREAVSLQPSQREL 779
Query: 326 RYAVA-----VSRIKDAERSQEPTEQLSWAGNEMASILREGDPVQIEPPIAWAGFAAVQK 380
R A+A + + K+AE+ + S + +P +E + +A+
Sbjct: 780 RLALAQVLAVMGQTKEAEK--------------ITSHIVSEEPRCLE---CYRLLSAIHS 822
Query: 381 THHEVAAAFETEENELS-KMEECAGAGESAF-----LDQASAVNVAKECLLAALKADPKA 434
A E E L K ++ E F L + + ++ A E AA+ DP
Sbjct: 823 KQEHHGKALEAIEKALQLKPKDPKVISELFFTKGNQLREQNLLDKAFESYEAAVTLDPDQ 882
Query: 435 AHIWANLANAYYLTGDHRSSGKCLEKVLMVYCSSNL 470
A W N+ ++ G + S+ E+ L + S L
Sbjct: 883 AQAWMNMGGIRHIQGSYVSARAYYERALKLVPDSKL 918
|
Mus musculus (taxid: 10090) |
| >sp|Q9FNS4|MBB1_CHLRE PsbB mRNA maturation factor Mbb1, chloroplastic OS=Chlamydomonas reinhardtii GN=MBB1 PE=2 SV=1 | Back alignment and function description |
|---|
Score = 47.4 bits (111), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 50/256 (19%), Positives = 100/256 (39%), Gaps = 53/256 (20%)
Query: 65 VHVARKMPK--NAHAHFLLGLMYQRLGQPLKAVSSYEKAEEILLRCEADIARPELLSLVQ 122
+ R+ P+ NA+ + LG M +LG+ +A S +E+ E + V
Sbjct: 257 IQRCRRKPQSQNAYLYNALGCMAAQLGRVGEARSWFEEGTRSA----------EGAASVA 306
Query: 123 IHHAQCLLPESSGDNSLDKELEPEEL-----------------------EEILSKLKESM 159
+ A +L GD ++ + L + L + L+ L+
Sbjct: 307 LWQAWAVLEAKQGDPTVVRYLFRKALGANPRSRYVHLAWALWERRQGNPQHCLALLRRGC 366
Query: 160 QSDTRQAVVWNTLGLILLKSGRLQSSISVLSSLLAVDPNNCDCIGNLGIAYFQSGDMEQS 219
+ + ++ L+ ++GR++ + + L DP++ G+ + G+M+++
Sbjct: 367 ELNPTDPALYQAWALVEKQAGRIERARELFEQGLRADPSDLYMWQAYGVMEAEQGNMDRA 426
Query: 220 AKCFQDLILKDQNHPAALINYAALLLCKYGSVLAGAGANTGEGACLDQASAVNVAKECLL 279
+ FQ+ + D P+ + + A GA QA V A+E
Sbjct: 427 RQLFQEGVWADPRSPSTVYVFHAW------------------GALEWQAGNVQTARELFK 468
Query: 280 AALKADPKAAHIWANL 295
AA++ DPK+ WA+
Sbjct: 469 AAVRVDPKSETTWASW 484
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Involved, directly or indirectly, in the processing of the chloroplast encoded psbB mRNA to its mature form, acting via the 5'-UTR of the psbB mRNA. Chlamydomonas reinhardtii (taxid: 3055) |
| >sp|O94474|SKI3_SCHPO Superkiller protein 3 OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=ski3 PE=3 SV=1 | Back alignment and function description |
|---|
Score = 46.2 bits (108), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 43/170 (25%), Positives = 67/170 (39%), Gaps = 20/170 (11%)
Query: 182 LQSSISVLSSLLAVDPNNCDCIGNLGIAYFQSGDMEQSAKCFQDLILKDQNH----PAAL 237
L+ S S S L DPN +LG+ Y DM ++ KCFQ D + A
Sbjct: 557 LEDSFSAFVSSLRKDPNYAPAYTSLGLYYRDIHDMVRATKCFQKAFELDASQVEAAEALA 616
Query: 238 INYAALLLCKYGSVLAGAGANTGE----------------GACLDQASAVNVAKECLLAA 281
+A + V++ NT E G A + A +A
Sbjct: 617 KTFAEANEWELVEVISRRVLNTSENDLKRKKKFNWHHTSLGVLELNAKNFHKAIVHFQSA 676
Query: 282 LKADPKAAHIWANLANAYYLTGDHRSSGKCLEKAAKLEPNCMSTRYAVAV 331
L+ PK + W+ L AY +G + S+ K +A+ L+P+ +Y +A
Sbjct: 677 LRISPKDTNAWSGLGEAYARSGRYVSALKAFNRASILDPDDWYVKYFIAT 726
|
Component of the SKI complex involved in 3'-mRNA degradation pathway. Schizosaccharomyces pombe (strain 972 / ATCC 24843) (taxid: 284812) |
| >sp|Q8CGY8|OGT1_MOUSE UDP-N-acetylglucosamine--peptide N-acetylglucosaminyltransferase 110 kDa subunit OS=Mus musculus GN=Ogt PE=1 SV=2 | Back alignment and function description |
|---|
Score = 45.8 bits (107), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 38/155 (24%), Positives = 62/155 (40%), Gaps = 21/155 (13%)
Query: 169 WNTLGLILLKSGRLQSSISVLSSLLAVDPNNCDCIGNLGIAYFQSGDMEQSAKCFQDLIL 228
++ LG + + G+LQ +I L + P+ D NL A +GDME + + +
Sbjct: 92 YSNLGNVYKERGQLQEAIEHYRHALRLKPDFIDGYINLAAALVAAGDMEGAVQAY----- 146
Query: 229 KDQNHPAALINYAALLLCKYGSVLAGAGANTGEGACLDQASAVNVAKECLLAALKADPKA 288
+ + Y L C + G L + AK C L A++ P
Sbjct: 147 ------VSALQYNPDLYC----------VRSDLGNLLKALGRLEEAKACYLKAIETQPNF 190
Query: 289 AHIWANLANAYYLTGDHRSSGKCLEKAAKLEPNCM 323
A W+NL + G+ + EKA L+PN +
Sbjct: 191 AVAWSNLGCVFNAQGEIWLAIHHFEKAVTLDPNFL 225
|
Catalyzes the transfer of a single N-acetylglucosamine from UDP-GlcNAc to a serine or threonine residue in cytoplasmic and nuclear proteins resulting in their modification with a beta-linked N-acetylglucosamine (O-GlcNAc). Glycosylates a large and diverse number of proteins including histone H2B, AKT1, MLL5, MAPT/TAU and HCFC1. Can regulate their cellular processes via cross-talk between glycosylation and phosphorylation or by affecting proteolytic processing. Involved in insulin resistance in muscle and adipocyte cells via glycosylating insulin signaling components and inhibiting the 'Thr-308' phosphorylation of AKT1, enhancing IRS1 phosphorylation and attenuating insulin signaling. Component of a THAP1/THAP3-HCFC1-OGT complex that is required for the regulation of the transcriptional activity of RRM1. As part of the NSL complex it may be involved in acetylation of nucleosomal histone H4 on several lysine residues. Mus musculus (taxid: 10090) EC: 2 EC: . EC: 4 EC: . EC: 1 EC: . EC: 2 EC: 5 EC: 5 |
| >sp|O15294|OGT1_HUMAN UDP-N-acetylglucosamine--peptide N-acetylglucosaminyltransferase 110 kDa subunit OS=Homo sapiens GN=OGT PE=1 SV=3 | Back alignment and function description |
|---|
Score = 45.8 bits (107), Expect = 8e-04, Method: Compositional matrix adjust.
Identities = 38/155 (24%), Positives = 62/155 (40%), Gaps = 21/155 (13%)
Query: 169 WNTLGLILLKSGRLQSSISVLSSLLAVDPNNCDCIGNLGIAYFQSGDMEQSAKCFQDLIL 228
++ LG + + G+LQ +I L + P+ D NL A +GDME + + +
Sbjct: 92 YSNLGNVYKERGQLQEAIEHYRHALRLKPDFIDGYINLAAALVAAGDMEGAVQAY----- 146
Query: 229 KDQNHPAALINYAALLLCKYGSVLAGAGANTGEGACLDQASAVNVAKECLLAALKADPKA 288
+ + Y L C + G L + AK C L A++ P
Sbjct: 147 ------VSALQYNPDLYC----------VRSDLGNLLKALGRLEEAKACYLKAIETQPNF 190
Query: 289 AHIWANLANAYYLTGDHRSSGKCLEKAAKLEPNCM 323
A W+NL + G+ + EKA L+PN +
Sbjct: 191 AVAWSNLGCVFNAQGEIWLAIHHFEKAVTLDPNFL 225
|
Isoform 2, the mitochondrial isoform (mOGT), is cytotoxic and triggers apoptosis in several cell types including INS1, an insulinoma cell line. Homo sapiens (taxid: 9606) EC: 2 EC: . EC: 4 EC: . EC: 1 EC: . EC: 2 EC: 5 EC: 5 |
| >sp|P56558|OGT1_RAT UDP-N-acetylglucosamine--peptide N-acetylglucosaminyltransferase 110 kDa subunit OS=Rattus norvegicus GN=Ogt PE=1 SV=1 | Back alignment and function description |
|---|
Score = 45.8 bits (107), Expect = 8e-04, Method: Compositional matrix adjust.
Identities = 38/155 (24%), Positives = 62/155 (40%), Gaps = 21/155 (13%)
Query: 169 WNTLGLILLKSGRLQSSISVLSSLLAVDPNNCDCIGNLGIAYFQSGDMEQSAKCFQDLIL 228
++ LG + + G+LQ +I L + P+ D NL A +GDME + + +
Sbjct: 82 YSNLGNVYKERGQLQEAIEHYRHALRLKPDFIDGYINLAAALVAAGDMEGAVQAY----- 136
Query: 229 KDQNHPAALINYAALLLCKYGSVLAGAGANTGEGACLDQASAVNVAKECLLAALKADPKA 288
+ + Y L C + G L + AK C L A++ P
Sbjct: 137 ------VSALQYNPDLYC----------VRSDLGNLLKALGRLEEAKACYLKAIETQPNF 180
Query: 289 AHIWANLANAYYLTGDHRSSGKCLEKAAKLEPNCM 323
A W+NL + G+ + EKA L+PN +
Sbjct: 181 AVAWSNLGCVFNAQGEIWLAIHHFEKAVTLDPNFL 215
|
Catalyzes the transfer of a single N-acetylglucosamine from UDP-GlcNAc to a serine or threonine residue in cytoplasmic and nuclear proteins resulting in their modification with a beta-linked N-acetylglucosamine (O-GlcNAc). Glycosylates a large and diverse number of proteins including histone H2B, AKT1, MLL5, MAPT/TAU and HCFC1. Can regulate their cellular processes via cross-talk between glycosylation and phosphorylation or by affecting proteolytic processing. Involved in insulin resistance in muscle and adipocyte cells via glycosylating insulin signaling components and inhibiting the 'Thr-308' phosphorylation of AKT1, enhancing IRS1 phosphorylation and attenuating insulin signaling. Component of a THAP1/THAP3-HCFC1-OGT complex that is required for the regulation of the transcriptional activity of RRM1. As part of the NSL complex it may be involved in acetylation of nucleosomal histone H4 on several lysine residues. Rattus norvegicus (taxid: 10116) EC: 2 EC: . EC: 4 EC: . EC: 1 EC: . EC: 2 EC: 5 EC: 5 |
| >sp|P81436|OGT1_RABIT UDP-N-acetylglucosamine--peptide N-acetylglucosaminyltransferase 110 kDa subunit OS=Oryctolagus cuniculus GN=OGT PE=1 SV=2 | Back alignment and function description |
|---|
Score = 45.8 bits (107), Expect = 8e-04, Method: Compositional matrix adjust.
Identities = 38/155 (24%), Positives = 62/155 (40%), Gaps = 21/155 (13%)
Query: 169 WNTLGLILLKSGRLQSSISVLSSLLAVDPNNCDCIGNLGIAYFQSGDMEQSAKCFQDLIL 228
++ LG + + G+LQ +I L + P+ D NL A +GDME + + +
Sbjct: 92 YSNLGNVYKERGQLQEAIEHYRHALRLKPDFIDGYINLAAALVAAGDMEGAVQAY----- 146
Query: 229 KDQNHPAALINYAALLLCKYGSVLAGAGANTGEGACLDQASAVNVAKECLLAALKADPKA 288
+ + Y L C + G L + AK C L A++ P
Sbjct: 147 ------VSALQYNPDLYC----------VRSDLGNLLKALGRLEEAKACYLKAIETQPNF 190
Query: 289 AHIWANLANAYYLTGDHRSSGKCLEKAAKLEPNCM 323
A W+NL + G+ + EKA L+PN +
Sbjct: 191 AVAWSNLGCVFNAQGEIWLAIHHFEKAVTLDPNFL 225
|
Catalyzes the transfer of a single N-acetylglucosamine from UDP-GlcNAc to a serine or threonine residue in cytoplasmic and nuclear proteins resulting in their modification with a beta-linked N-acetylglucosamine (O-GlcNAc). Glycosylates a large and diverse number of proteins including histone H2B, AKT1, MLL5, MAPT/TAU and HCFC1. Can regulate their cellular processes via cross-talk between glycosylation and phosphorylation or by affecting proteolytic processing. Involved in insulin resistance in muscle and adipocyte cells via glycosylating insulin signaling components and inhibiting the 'Thr-308' phosphorylation of AKT1, enhancing IRS1 phosphorylation and attenuating insulin signaling. Component of a THAP1/THAP3-HCFC1-OGT complex that is required for the regulation of the transcriptional activity of RRM1. As part of the NSL complex it may be involved in acetylation of nucleosomal histone H4 on several lysine residues. Oryctolagus cuniculus (taxid: 9986) EC: 2 EC: . EC: 4 EC: . EC: 1 EC: . EC: 2 EC: 5 EC: 5 |
| >sp|Q27HV0|OGT1_PIG UDP-N-acetylglucosamine--peptide N-acetylglucosaminyltransferase 110 kDa subunit OS=Sus scrofa GN=OGT PE=2 SV=1 | Back alignment and function description |
|---|
Score = 45.8 bits (107), Expect = 8e-04, Method: Compositional matrix adjust.
Identities = 38/155 (24%), Positives = 62/155 (40%), Gaps = 21/155 (13%)
Query: 169 WNTLGLILLKSGRLQSSISVLSSLLAVDPNNCDCIGNLGIAYFQSGDMEQSAKCFQDLIL 228
++ LG + + G+LQ +I L + P+ D NL A +GDME + + +
Sbjct: 92 YSNLGNVYKERGQLQEAIEHYRHALRLKPDFIDGYINLAAALVAAGDMEGAVQAY----- 146
Query: 229 KDQNHPAALINYAALLLCKYGSVLAGAGANTGEGACLDQASAVNVAKECLLAALKADPKA 288
+ + Y L C + G L + AK C L A++ P
Sbjct: 147 ------VSALQYNPDLYC----------VRSDLGNLLKALGRLEEAKACYLKAIETQPNF 190
Query: 289 AHIWANLANAYYLTGDHRSSGKCLEKAAKLEPNCM 323
A W+NL + G+ + EKA L+PN +
Sbjct: 191 AVAWSNLGCVFNAQGEIWLAIHHFEKAVTLDPNFL 225
|
Catalyzes the transfer of a single N-acetylglucosamine from UDP-GlcNAc to a serine or threonine residue in cytoplasmic and nuclear proteins resulting in their modification with a beta-linked N-acetylglucosamine (O-GlcNAc). Glycosylates a large and diverse number of proteins including histone H2B, AKT1, MLL5, MAPT/TAU and HCFC1. Can regulate their cellular processes via cross-talk between glycosylation and phosphorylation or by affecting proteolytic processing. Involved in insulin resistance in muscle and adipocyte cells via glycosylating insulin signaling components and inhibiting the 'Thr-308' phosphorylation of AKT1, enhancing IRS1 phosphorylation and attenuating insulin signaling. Component of a THAP1/THAP3-HCFC1-OGT complex that is required for the regulation of the transcriptional activity of RRM1. As part of the NSL complex it may be involved in acetylation of nucleosomal histone H4 on several lysine residues. Sus scrofa (taxid: 9823) EC: 2 EC: . EC: 4 EC: . EC: 1 EC: . EC: 2 EC: 5 EC: 5 |
Close Homologs in the Non-Redundant Database Detected by BLAST
Original result of BLAST against Nonredundant Database
| GI | Alignment Graph | Length |
Definition |
Q cover |
H cover |
Identity |
E-value |
| Query | 470 | ||||||
| 255540413 | 650 | o-linked n-acetylglucosamine transferase | 0.848 | 0.613 | 0.780 | 1e-173 | |
| 225456798 | 658 | PREDICTED: probable UDP-N-acetylglucosam | 0.897 | 0.641 | 0.702 | 1e-167 | |
| 356516597 | 629 | PREDICTED: probable UDP-N-acetylglucosam | 0.848 | 0.634 | 0.712 | 1e-163 | |
| 224119546 | 665 | predicted protein [Populus trichocarpa] | 0.808 | 0.571 | 0.756 | 1e-161 | |
| 356507317 | 644 | PREDICTED: tetratricopeptide repeat prot | 0.848 | 0.619 | 0.712 | 1e-161 | |
| 358348985 | 652 | UDP-N-acetylglucosamine-peptide N-acetyl | 0.853 | 0.615 | 0.714 | 1e-153 | |
| 51969340 | 649 | unknown protein [Arabidopsis thaliana] | 0.976 | 0.707 | 0.613 | 1e-150 | |
| 297793915 | 650 | tetratricopeptide repeat-containing prot | 0.976 | 0.706 | 0.603 | 1e-149 | |
| 30697806 | 649 | tetratricopeptide repeat (TPR)-containin | 0.976 | 0.707 | 0.611 | 1e-149 | |
| 449469594 | 647 | PREDICTED: probable UDP-N-acetylglucosam | 0.848 | 0.616 | 0.688 | 1e-147 |
| >gi|255540413|ref|XP_002511271.1| o-linked n-acetylglucosamine transferase, ogt, putative [Ricinus communis] gi|223550386|gb|EEF51873.1| o-linked n-acetylglucosamine transferase, ogt, putative [Ricinus communis] | Back alignment and taxonomy information |
|---|
Score = 614 bits (1584), Expect = e-173, Method: Compositional matrix adjust.
Identities = 313/401 (78%), Positives = 348/401 (86%), Gaps = 2/401 (0%)
Query: 3 KEMDVAEVEGKKINKLGKCRSRISSKMDSALEFGVDADGDQSGLGTSSSSREEKVSSLKT 62
KE D E EGKK+NKLGKCRSR +SK+D++L++G D D DQ G G SS REEKVSSLKT
Sbjct: 81 KEGDTVEFEGKKLNKLGKCRSR-NSKLDASLDYGPDIDADQPGQGPISS-REEKVSSLKT 138
Query: 63 GLVHVARKMPKNAHAHFLLGLMYQRLGQPLKAVSSYEKAEEILLRCEADIARPELLSLVQ 122
GLVHVA+KMPKNAHAHF+LGLMYQRLGQP KAV +YEKAEEILLR EA++ARPE LSLVQ
Sbjct: 139 GLVHVAKKMPKNAHAHFILGLMYQRLGQPQKAVFAYEKAEEILLRSEAEVARPEFLSLVQ 198
Query: 123 IHHAQCLLPESSGDNSLDKELEPEELEEILSKLKESMQSDTRQAVVWNTLGLILLKSGRL 182
IHHAQC+L E+S DNSLDKELE EELEE+LS++KESMQSD RQA VWNTLGLILLKSGRL
Sbjct: 199 IHHAQCILLENSSDNSLDKELEAEELEEVLSRMKESMQSDVRQAAVWNTLGLILLKSGRL 258
Query: 183 QSSISVLSSLLAVDPNNCDCIGNLGIAYFQSGDMEQSAKCFQDLILKDQNHPAALINYAA 242
QS+ISV SSLLA+D +N DC+GNLGIAY QSGD+E SAKCFQ+LILKDQNHPAA +NYAA
Sbjct: 259 QSAISVWSSLLAMDTSNYDCLGNLGIAYLQSGDLELSAKCFQELILKDQNHPAAFVNYAA 318
Query: 243 LLLCKYGSVLAGAGANTGEGACLDQASAVNVAKECLLAALKADPKAAHIWANLANAYYLT 302
LLLCKYGSV+AG GAN GEGA + A V+VA ECLLA LK DPKAAH+WANLANAYYLT
Sbjct: 319 LLLCKYGSVVAGPGANAGEGASVYWAEPVHVAMECLLAGLKVDPKAAHLWANLANAYYLT 378
Query: 303 GDHRSSGKCLEKAAKLEPNCMSTRYAVAVSRIKDAERSQEPTEQLSWAGNEMASILREGD 362
GD+RSS KCLEK+AKLEPNCM TRYAVAV RIKDAERSQ+P EQLSWAGNEMASILREG+
Sbjct: 379 GDYRSSSKCLEKSAKLEPNCMCTRYAVAVQRIKDAERSQDPNEQLSWAGNEMASILREGE 438
Query: 363 PVQIEPPIAWAGFAAVQKTHHEVAAAFETEENELSKMEECA 403
V IE PIAWAG A V K HE+AAAFETE NEL+ +EE A
Sbjct: 439 SVPIEFPIAWAGLAMVHKAQHEIAAAFETERNELADVEERA 479
|
Source: Ricinus communis Species: Ricinus communis Genus: Ricinus Family: Euphorbiaceae Order: Malpighiales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|225456798|ref|XP_002275611.1| PREDICTED: probable UDP-N-acetylglucosamine--peptide N-acetylglucosaminyltransferase SPINDLY [Vitis vinifera] gi|297733645|emb|CBI14892.3| unnamed protein product [Vitis vinifera] | Back alignment and taxonomy information |
|---|
Score = 593 bits (1528), Expect = e-167, Method: Compositional matrix adjust.
Identities = 310/441 (70%), Positives = 360/441 (81%), Gaps = 19/441 (4%)
Query: 1 MSKEMDVAEVEGKKINKLGKCRSRISSKMDSALEFGVDADGDQSGLGTSSSSREEKVSSL 60
+SK+ D+ + EGK++NKLGK RSR++ K++ L++G DAD DQ G G + +SREEKVSSL
Sbjct: 79 VSKDTDMVDGEGKRLNKLGKPRSRVT-KVEYPLDYGADADADQHGQG-APTSREEKVSSL 136
Query: 61 KTGLVHVARKMPKNAHAHFLLGLMYQRLGQPLKAVSSYEKAEEILLRCEADIARPELLSL 120
KTGLVHVARKMPKNAHAHF+LGLMYQRLGQP KAVS+YEKA EILLRCE +I RPELLSL
Sbjct: 137 KTGLVHVARKMPKNAHAHFILGLMYQRLGQPQKAVSAYEKAAEILLRCEEEIDRPELLSL 196
Query: 121 VQIHHAQCLLPESSGDNSLDKELEPEELEEILSKLKESMQSDTRQAVVWNTLGLILLKSG 180
VQIHHAQCLL SSGD+S DKELEPEELEEIL K+K+SMQSD RQA VWNTLGLILL++G
Sbjct: 197 VQIHHAQCLLLGSSGDHSADKELEPEELEEILLKMKDSMQSDIRQAAVWNTLGLILLRTG 256
Query: 181 RLQSSISVLSSLLAVDPNNCDCIGNLGIAYFQSGDMEQSAKCFQDLILKDQNHPAALINY 240
RLQ++ISVLSSLL + P+N DC+GNLGIAY +SG++E + KCFQ+LILKDQNHPAALINY
Sbjct: 257 RLQNAISVLSSLLTIAPDNLDCLGNLGIAYLRSGNLELAEKCFQNLILKDQNHPAALINY 316
Query: 241 AALLLCKYGSVLAGAGANTGEGACLDQASAVNVAKECLLAALKADPKAAHIWANLANAYY 300
AA+L+CKYGS++AGAGAN+GEGA DQ A NVAKECLLAA+K +PKAAH+WANLANAYY
Sbjct: 317 AAVLMCKYGSIIAGAGANSGEGASEDQLIAANVAKECLLAAVKVEPKAAHVWANLANAYY 376
Query: 301 LTGDHRSSGKCLEKAAKLEPNCMSTRYAVAVSRIKDAERSQEPTEQLSWAGNEMASILRE 360
L GD RSS KC EKAAKLEPNCMSTRYAVAV +IKDAER Q+P+EQLSWAGNEMASILRE
Sbjct: 377 LMGDCRSSSKCFEKAAKLEPNCMSTRYAVAVHQIKDAERYQDPSEQLSWAGNEMASILRE 436
Query: 361 GDPVQIEPPIAWAGFAAVQKTHHEVAAAFETEENELSKMEECAGAGESAFLDQASAVNVA 420
GD IE PIAWAG A V K +E+AAAFETE L +MEE AV++
Sbjct: 437 GDSALIEHPIAWAGLAMVHKIQNEIAAAFETEHKGLMEMEE-------------RAVHIL 483
Query: 421 KECLLAALKADPKAAHIWANL 441
K+ A+ DP A W L
Sbjct: 484 KQ----AIAEDPDDAVQWHQL 500
|
Source: Vitis vinifera Species: Vitis vinifera Genus: Vitis Family: Vitaceae Order: Vitales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|356516597|ref|XP_003526980.1| PREDICTED: probable UDP-N-acetylglucosamine--peptide N-acetylglucosaminyltransferase SPINDLY-like [Glycine max] | Back alignment and taxonomy information |
|---|
Score = 580 bits (1494), Expect = e-163, Method: Compositional matrix adjust.
Identities = 287/403 (71%), Positives = 336/403 (83%), Gaps = 4/403 (0%)
Query: 1 MSKEMDVAEVEGKKINKLGKCRSRISSKMDSALEFGVDADGDQSGLGTSSSSREEKVSSL 60
+SK+ D E E KK+NKL K RSR K DS+L+F D DGDQ G SS REEKVSS+
Sbjct: 52 LSKDTDSIEAESKKLNKLSKSRSR---KTDSSLDFVADVDGDQHVQGPPSS-REEKVSSV 107
Query: 61 KTGLVHVARKMPKNAHAHFLLGLMYQRLGQPLKAVSSYEKAEEILLRCEADIARPELLSL 120
KTGLVHVARKMPKNAHAHF+LGLMYQRL QP KAV +YEKAEEILLR EA+I RPELLSL
Sbjct: 108 KTGLVHVARKMPKNAHAHFILGLMYQRLSQPQKAVLAYEKAEEILLRPEAEIDRPELLSL 167
Query: 121 VQIHHAQCLLPESSGDNSLDKELEPEELEEILSKLKESMQSDTRQAVVWNTLGLILLKSG 180
VQIHHAQCL+ ESS +NS DKELEP+ELEEILSKLKES++SD RQ VWNTLG ILLK+G
Sbjct: 168 VQIHHAQCLILESSSENSSDKELEPDELEEILSKLKESVKSDIRQTAVWNTLGFILLKTG 227
Query: 181 RLQSSISVLSSLLAVDPNNCDCIGNLGIAYFQSGDMEQSAKCFQDLILKDQNHPAALINY 240
R++S++SVLSSLL++ P N DC+GNLGIAY + G++E SAKCFQ+LILKDQNHPAAL+NY
Sbjct: 228 RVKSAVSVLSSLLSIAPENYDCLGNLGIAYLKIGNLELSAKCFQELILKDQNHPAALVNY 287
Query: 241 AALLLCKYGSVLAGAGANTGEGACLDQASAVNVAKECLLAALKADPKAAHIWANLANAYY 300
AALLLCKY SV+AG GA+ EGA DQ + NVAKECLLAA+KAD K+AH+WANLA A+
Sbjct: 288 AALLLCKYASVVAGPGASAAEGAMTDQIMSANVAKECLLAAVKADSKSAHVWANLACAFS 347
Query: 301 LTGDHRSSGKCLEKAAKLEPNCMSTRYAVAVSRIKDAERSQEPTEQLSWAGNEMASILRE 360
++GDHRSS KCLEKAAKLEPNCMSTRYAVA RIK+AERSQ+P+E LS AGNEMASI+R+
Sbjct: 348 ISGDHRSSSKCLEKAAKLEPNCMSTRYAVAFHRIKEAERSQDPSELLSCAGNEMASIIRD 407
Query: 361 GDPVQIEPPIAWAGFAAVQKTHHEVAAAFETEENELSKMEECA 403
GD +E PIAW+G A V K HE+AAA+E+E+N L ++EE A
Sbjct: 408 GDSSLVEIPIAWSGLAMVHKAQHEIAAAYESEQNGLREVEERA 450
|
Source: Glycine max Species: Glycine max Genus: Glycine Family: Fabaceae Order: Fabales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|224119546|ref|XP_002318101.1| predicted protein [Populus trichocarpa] gi|222858774|gb|EEE96321.1| predicted protein [Populus trichocarpa] | Back alignment and taxonomy information |
|---|
Score = 575 bits (1482), Expect = e-161, Method: Compositional matrix adjust.
Identities = 289/382 (75%), Positives = 336/382 (87%), Gaps = 2/382 (0%)
Query: 22 RSRISSKMDSALEFGVDADGDQSGLGTSSSSREEKVSSLKTGLVHVARKMPKNAHAHFLL 81
RSR +SK+D+ L++G D D DQ G SS REE+VSSLKTGL+HVA+KMPKNAHAHF+L
Sbjct: 107 RSR-NSKLDNPLDYGPDNDNDQPNQGPSSY-REERVSSLKTGLLHVAKKMPKNAHAHFIL 164
Query: 82 GLMYQRLGQPLKAVSSYEKAEEILLRCEADIARPELLSLVQIHHAQCLLPESSGDNSLDK 141
GLMYQRL QP KA+ +YEKAEEILLRCEA++ARP+LLSLVQIHHAQC+L E+SGDNSL+K
Sbjct: 165 GLMYQRLSQPQKAILAYEKAEEILLRCEAEVARPDLLSLVQIHHAQCILLETSGDNSLEK 224
Query: 142 ELEPEELEEILSKLKESMQSDTRQAVVWNTLGLILLKSGRLQSSISVLSSLLAVDPNNCD 201
ELE +ELE++L KLKESMQSD RQ VWNTLGLILLKSGR+QS++SVLS+L+AVDPNN D
Sbjct: 225 ELEGQELEDVLFKLKESMQSDIRQVAVWNTLGLILLKSGRVQSAVSVLSALMAVDPNNYD 284
Query: 202 CIGNLGIAYFQSGDMEQSAKCFQDLILKDQNHPAALINYAALLLCKYGSVLAGAGANTGE 261
C+ NLGIA+ QSG++E SAKCFQDLILKDQNHP++L+NYAA+LL KYGSV+AGAGAN G
Sbjct: 285 CLANLGIAFLQSGNLELSAKCFQDLILKDQNHPSSLVNYAAVLLSKYGSVVAGAGANAGV 344
Query: 262 GACLDQASAVNVAKECLLAALKADPKAAHIWANLANAYYLTGDHRSSGKCLEKAAKLEPN 321
GA +DQA A+NVAKECLLAALK +PKAAHIWANLANAY++ GDHRS+ KCLEKAAKLEPN
Sbjct: 345 GASVDQAEAINVAKECLLAALKLEPKAAHIWANLANAYFMIGDHRSASKCLEKAAKLEPN 404
Query: 322 CMSTRYAVAVSRIKDAERSQEPTEQLSWAGNEMASILREGDPVQIEPPIAWAGFAAVQKT 381
CMSTRYAVAV RIKDAERSQ+P+EQLS AGNEMASILREGD V I+ PIAWAG V K
Sbjct: 405 CMSTRYAVAVHRIKDAERSQDPSEQLSLAGNEMASILREGDSVPIDLPIAWAGLGMVHKA 464
Query: 382 HHEVAAAFETEENELSKMEECA 403
HE+AAAF+TE NEL ++EE A
Sbjct: 465 QHEIAAAFDTESNELMEVEERA 486
|
Source: Populus trichocarpa Species: Populus trichocarpa Genus: Populus Family: Salicaceae Order: Malpighiales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|356507317|ref|XP_003522414.1| PREDICTED: tetratricopeptide repeat protein 37-like [Glycine max] | Back alignment and taxonomy information |
|---|
Score = 574 bits (1479), Expect = e-161, Method: Compositional matrix adjust.
Identities = 287/403 (71%), Positives = 331/403 (82%), Gaps = 4/403 (0%)
Query: 1 MSKEMDVAEVEGKKINKLGKCRSRISSKMDSALEFGVDADGDQSGLGTSSSSREEKVSSL 60
+SK+ D E E KK+NKL K RSR K DS+L+ D DGDQ G SS REEKVSS+
Sbjct: 67 LSKDTDSIEGESKKLNKLSKSRSR---KTDSSLDCVADVDGDQHVQGPPSS-REEKVSSV 122
Query: 61 KTGLVHVARKMPKNAHAHFLLGLMYQRLGQPLKAVSSYEKAEEILLRCEADIARPELLSL 120
KTGLVHVARKMPKNAHAHF+LGLMYQRL QP KAV +YEKAEEILLR EA+I RPELLSL
Sbjct: 123 KTGLVHVARKMPKNAHAHFILGLMYQRLSQPQKAVLAYEKAEEILLRPEAEIDRPELLSL 182
Query: 121 VQIHHAQCLLPESSGDNSLDKELEPEELEEILSKLKESMQSDTRQAVVWNTLGLILLKSG 180
VQIHHAQCL+ ESS +NS DKELEP ELEEIL KLK+S++SD RQ VWNTLG ILLK+G
Sbjct: 183 VQIHHAQCLILESSSENSSDKELEPHELEEILFKLKQSVRSDIRQTAVWNTLGFILLKTG 242
Query: 181 RLQSSISVLSSLLAVDPNNCDCIGNLGIAYFQSGDMEQSAKCFQDLILKDQNHPAALINY 240
R+QS+ISVLSSLL++ P N DC+GNLGIAY Q G++E SAKCFQ+LILKDQNHPAAL+NY
Sbjct: 243 RMQSAISVLSSLLSIAPENYDCLGNLGIAYLQIGNLELSAKCFQELILKDQNHPAALVNY 302
Query: 241 AALLLCKYGSVLAGAGANTGEGACLDQASAVNVAKECLLAALKADPKAAHIWANLANAYY 300
AALLLCKY SV+AG GA EGA DQ A NVAKECLLAA+KAD K+AH+WANLA A+
Sbjct: 303 AALLLCKYASVVAGPGAIAAEGALTDQIMAANVAKECLLAAVKADSKSAHVWANLAYAFS 362
Query: 301 LTGDHRSSGKCLEKAAKLEPNCMSTRYAVAVSRIKDAERSQEPTEQLSWAGNEMASILRE 360
++GDHRSS KCLEKAAKLEPNCMSTRYAVA+ RIK+AERSQ+PTE LS AGNEMASI+R+
Sbjct: 363 ISGDHRSSSKCLEKAAKLEPNCMSTRYAVAIHRIKEAERSQDPTELLSCAGNEMASIIRD 422
Query: 361 GDPVQIEPPIAWAGFAAVQKTHHEVAAAFETEENELSKMEECA 403
D +E PI W+G A V K HE+AAA+E+E+N L ++EE A
Sbjct: 423 SDSSLVEIPIVWSGLAMVHKAQHEIAAAYESEQNGLREVEERA 465
|
Source: Glycine max Species: Glycine max Genus: Glycine Family: Fabaceae Order: Fabales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|358348985|ref|XP_003638521.1| UDP-N-acetylglucosamine-peptide N-acetylglucosaminyltransferase 110 kDa subunit [Medicago truncatula] gi|355504456|gb|AES85659.1| UDP-N-acetylglucosamine-peptide N-acetylglucosaminyltransferase 110 kDa subunit [Medicago truncatula] | Back alignment and taxonomy information |
|---|
Score = 548 bits (1413), Expect = e-153, Method: Compositional matrix adjust.
Identities = 288/403 (71%), Positives = 338/403 (83%), Gaps = 2/403 (0%)
Query: 1 MSKEMDVAEVEGKKINKLGKCRSRISSKMDSALEFGVDADGDQSGLGTSSSSREEKVSSL 60
+SK+ + E EGK +NKLGKCRS+ SK DS+++ G DADGDQ G + S+REEKVSS+
Sbjct: 73 LSKDTNSNEGEGKLLNKLGKCRSK-PSKTDSSIDCGADADGDQHVQG-APSAREEKVSSM 130
Query: 61 KTGLVHVARKMPKNAHAHFLLGLMYQRLGQPLKAVSSYEKAEEILLRCEADIARPELLSL 120
KTGLVHVARKMPKNAHAHF+LGLMYQRL QP KA+ +YEKAEEILLR E +I R E L+L
Sbjct: 131 KTGLVHVARKMPKNAHAHFILGLMYQRLNQPQKAILAYEKAEEILLRPEVEIDRAEFLAL 190
Query: 121 VQIHHAQCLLPESSGDNSLDKELEPEELEEILSKLKESMQSDTRQAVVWNTLGLILLKSG 180
VQIHHAQCL+ ESS +NS D+ELEP ELEEI+SKLKES QSD RQA VWNTLG ILLK+G
Sbjct: 191 VQIHHAQCLIIESSSENSSDQELEPHELEEIISKLKESTQSDIRQAAVWNTLGFILLKTG 250
Query: 181 RLQSSISVLSSLLAVDPNNCDCIGNLGIAYFQSGDMEQSAKCFQDLILKDQNHPAALINY 240
R+QS+ISVLSSLLA+ P N DC+GNLGIAY Q GD+E SAKCFQ+LILKDQNHPAAL+NY
Sbjct: 251 RVQSAISVLSSLLAISPENYDCLGNLGIAYLQIGDLELSAKCFQELILKDQNHPAALVNY 310
Query: 241 AALLLCKYGSVLAGAGANTGEGACLDQASAVNVAKECLLAALKADPKAAHIWANLANAYY 300
AALLLCK SV+AGAGAN EGA +Q+ A NVAKECLLAA+KAD K+AHIWANLA A+
Sbjct: 311 AALLLCKNASVVAGAGANAAEGASAEQSMAANVAKECLLAAIKADGKSAHIWANLAYAFS 370
Query: 301 LTGDHRSSGKCLEKAAKLEPNCMSTRYAVAVSRIKDAERSQEPTEQLSWAGNEMASILRE 360
+TG+HR S KCLEKAAKLEPNCMSTRYAVA RIK+AERSQ+P+E LS AGNEMASI+R+
Sbjct: 371 ITGNHRISSKCLEKAAKLEPNCMSTRYAVASHRIKEAERSQDPSELLSSAGNEMASIIRD 430
Query: 361 GDPVQIEPPIAWAGFAAVQKTHHEVAAAFETEENELSKMEECA 403
GD +E PIAWAG A V K HE++AA+E+E++ L ++EECA
Sbjct: 431 GDSSLVELPIAWAGLAMVHKAQHEISAAYESEQDGLKEIEECA 473
|
Source: Medicago truncatula Species: Medicago truncatula Genus: Medicago Family: Fabaceae Order: Fabales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|51969340|dbj|BAD43362.1| unknown protein [Arabidopsis thaliana] | Back alignment and taxonomy information |
|---|
Score = 538 bits (1385), Expect = e-150, Method: Compositional matrix adjust.
Identities = 294/479 (61%), Positives = 364/479 (75%), Gaps = 20/479 (4%)
Query: 3 KEMDVAEVEGKKINKLGKCRSRISSKMDSALEFGVDADGDQSGLGTSSSSREEKVSSLKT 62
KE++ EVE KKI+K+GKCRSR SK++S+ + GVDADGD + G +S REEK+S+LK
Sbjct: 71 KEVEPGEVEAKKISKVGKCRSR--SKIESSSDCGVDADGDLANQGVPAS-REEKISNLKM 127
Query: 63 GLVHVARKMPKNAHAHFLLGLMYQRLGQPLKAVSSYEKAEEILLRCEADIARPELLSLVQ 122
GL+HVARKMPKNAHAHF+LGLM+QRLGQ KA+ YEKAEEILL CE +IARPELL LVQ
Sbjct: 128 GLIHVARKMPKNAHAHFILGLMFQRLGQSQKAIPEYEKAEEILLGCEPEIARPELLLLVQ 187
Query: 123 IHHAQCLLPESSGDNSLDKELEPEELEEILSKLKESMQSDTRQAVVWNTLGLILLKSGRL 182
IHH QCLL + GD KELE EELEEILSKLK+S++ D RQA VWNTLGL+LLK+GRL
Sbjct: 188 IHHGQCLLLDGFGDTDSVKELEGEELEEILSKLKDSIKLDVRQAAVWNTLGLMLLKAGRL 247
Query: 183 QSSISVLSSLLAVDPNNCDCIGNLGIAYFQSGDMEQSAKCFQDLILKDQNHPAALINYAA 242
S+ISVLSSLLA+ P+N DC+ NLG+AY QSGDME SAKCFQDL+LKD NHPAALINYAA
Sbjct: 248 MSAISVLSSLLALVPDNYDCLANLGVAYLQSGDMELSAKCFQDLVLKDHNHPAALINYAA 307
Query: 243 LLLCKYGSVLAGAGANTGEGACLDQASAVNVAKECLLAALKADPKAAHIWANLANAYYLT 302
LLCK+ S +AGAGAN G A DQ + +NVAKECLLAAL++DPK+AH W NLAN+YY+
Sbjct: 308 ELLCKHSSTVAGAGANGGADASEDQKAPMNVAKECLLAALRSDPKSAHAWVNLANSYYMM 367
Query: 303 GDHRSSGKCLEKAAKLEPNCMSTRYAVAVSRIKDAERSQEPTEQLSWAGNEMASILREGD 362
GDHRSS KCLEKAAKL+PNCM+TR+AVAV RIKDAERSQ+ ++QLSWAGNEMAS++REG+
Sbjct: 368 GDHRSSSKCLEKAAKLDPNCMATRFAVAVQRIKDAERSQDASDQLSWAGNEMASVIREGE 427
Query: 363 PVQIEPPIAWAGFAAVQKTHHEVAAAFETEENELSKMEECA--GAGESAFLDQASAVN-- 418
V I+PPIAWAG A K HE+AAAF + NEL++MEE A ++ D AV
Sbjct: 428 SVPIDPPIAWAGLAMAHKAQHEIAAAFVADRNELTEMEERAVYSLKQAVTEDPEDAVRWH 487
Query: 419 -------------VAKECLLAALKADPKAAHIWANLANAYYLTGDHRSSGKCLEKVLMV 464
++++ L AA+ + ++ W+NL + L+ +H + + ++ L V
Sbjct: 488 QLGLHSLCSQQYKLSQKYLKAAVGRSRECSYAWSNLGISLQLSDEHSEAEEVYKRALTV 546
|
Source: Arabidopsis thaliana Species: Arabidopsis thaliana Genus: Arabidopsis Family: Brassicaceae Order: Brassicales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|297793915|ref|XP_002864842.1| tetratricopeptide repeat-containing protein [Arabidopsis lyrata subsp. lyrata] gi|297310677|gb|EFH41101.1| tetratricopeptide repeat-containing protein [Arabidopsis lyrata subsp. lyrata] | Back alignment and taxonomy information |
|---|
Score = 533 bits (1374), Expect = e-149, Method: Compositional matrix adjust.
Identities = 289/479 (60%), Positives = 362/479 (75%), Gaps = 20/479 (4%)
Query: 3 KEMDVAEVEGKKINKLGKCRSRISSKMDSALEFGVDADGDQSGLGTSSSSREEKVSSLKT 62
K+++ EVE KKI+K+GKCRSR SK++ + + G+DADGDQ+ G +S REEK+S+LK
Sbjct: 72 KDVEPGEVEAKKISKVGKCRSR--SKIEPSSDCGLDADGDQANQGVPAS-REEKISNLKM 128
Query: 63 GLVHVARKMPKNAHAHFLLGLMYQRLGQPLKAVSSYEKAEEILLRCEADIARPELLSLVQ 122
GL+HVARKMPKNAHAHF+LGLM+QRLGQP KA+ YEKAEEILL CE +IARPELL LVQ
Sbjct: 129 GLIHVARKMPKNAHAHFILGLMFQRLGQPQKAIPEYEKAEEILLGCEPEIARPELLLLVQ 188
Query: 123 IHHAQCLLPESSGDNSLDKELEPEELEEILSKLKESMQSDTRQAVVWNTLGLILLKSGRL 182
IHH QCLL + GD KELE EELEEILSKLK+S++ D RQA VWNTLGL+LLK+G L
Sbjct: 189 IHHGQCLLLDGFGDTDSVKELEGEELEEILSKLKDSIKLDVRQAAVWNTLGLMLLKAGCL 248
Query: 183 QSSISVLSSLLAVDPNNCDCIGNLGIAYFQSGDMEQSAKCFQDLILKDQNHPAALINYAA 242
S++SVLSSLLA+ P+N DC+ NLG+AY QSGDME SAKCFQDL+LKD NHPAALINYAA
Sbjct: 249 MSAVSVLSSLLALVPDNYDCLANLGVAYLQSGDMELSAKCFQDLVLKDHNHPAALINYAA 308
Query: 243 LLLCKYGSVLAGAGANTGEGACLDQASAVNVAKECLLAALKADPKAAHIWANLANAYYLT 302
LLCK+ S +AGAGAN G DQ + +NVAKECLLAAL++DPK+AH W NLAN+YY+
Sbjct: 309 ELLCKHSSTVAGAGANGGADTSEDQKAPMNVAKECLLAALRSDPKSAHAWVNLANSYYMM 368
Query: 303 GDHRSSGKCLEKAAKLEPNCMSTRYAVAVSRIKDAERSQEPTEQLSWAGNEMASILREGD 362
GDHRSS KCLEKAAKL+PNCM+TR+AVAV RIKDAERSQ ++QLSWAGNEMAS++REG+
Sbjct: 369 GDHRSSSKCLEKAAKLDPNCMATRFAVAVQRIKDAERSQNASDQLSWAGNEMASVIREGE 428
Query: 363 PVQIEPPIAWAGFAAVQKTHHEVAAAFETEENELSKMEECA--GAGESAFLDQASAVN-- 418
V I+PPIAWAG A K HE+AAAF + NEL++MEE A ++ D AV
Sbjct: 429 SVPIDPPIAWAGLAMAHKAQHEIAAAFVADRNELTEMEERAVYSLKQAVTEDPEDAVRWH 488
Query: 419 -------------VAKECLLAALKADPKAAHIWANLANAYYLTGDHRSSGKCLEKVLMV 464
++++ + AA+ + ++ W+NL + L+ +H + + ++ L V
Sbjct: 489 QLGLHSLCSQQYKLSQKYIKAAVGRSRECSYAWSNLGISLQLSDEHSEAEEVYKRALAV 547
|
Source: Arabidopsis lyrata subsp. lyrata Species: Arabidopsis lyrata Genus: Arabidopsis Family: Brassicaceae Order: Brassicales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|30697806|ref|NP_201125.2| tetratricopeptide repeat (TPR)-containing protein [Arabidopsis thaliana] gi|51971054|dbj|BAD44219.1| unknown protein [Arabidopsis thaliana] gi|51971080|dbj|BAD44232.1| unknown protein [Arabidopsis thaliana] gi|332010335|gb|AED97718.1| tetratricopeptide repeat (TPR)-containing protein [Arabidopsis thaliana] | Back alignment and taxonomy information |
|---|
Score = 533 bits (1374), Expect = e-149, Method: Compositional matrix adjust.
Identities = 293/479 (61%), Positives = 363/479 (75%), Gaps = 20/479 (4%)
Query: 3 KEMDVAEVEGKKINKLGKCRSRISSKMDSALEFGVDADGDQSGLGTSSSSREEKVSSLKT 62
KE++ EVE KKI+K+GKCRSR SK++S+ + GVDADGD + G +S REEK+S+LK
Sbjct: 71 KEVEPGEVEAKKISKVGKCRSR--SKIESSSDCGVDADGDLANQGVPAS-REEKISNLKM 127
Query: 63 GLVHVARKMPKNAHAHFLLGLMYQRLGQPLKAVSSYEKAEEILLRCEADIARPELLSLVQ 122
GL+HVARKMPKNAHAHF+LGLM+QRLGQ KA+ YEKAEEILL CE +IARPELL LVQ
Sbjct: 128 GLIHVARKMPKNAHAHFILGLMFQRLGQSQKAIPEYEKAEEILLGCEPEIARPELLLLVQ 187
Query: 123 IHHAQCLLPESSGDNSLDKELEPEELEEILSKLKESMQSDTRQAVVWNTLGLILLKSGRL 182
IHH QCLL + GD KELE EELEEILSKLK+S++ D RQA VWNTLGL+LLK+G L
Sbjct: 188 IHHGQCLLLDGFGDTDSVKELEGEELEEILSKLKDSIKLDVRQAAVWNTLGLMLLKAGCL 247
Query: 183 QSSISVLSSLLAVDPNNCDCIGNLGIAYFQSGDMEQSAKCFQDLILKDQNHPAALINYAA 242
S+ISVLSSLLA+ P+N DC+ NLG+AY QSGDME SAKCFQDL+LKD NHPAALINYAA
Sbjct: 248 MSAISVLSSLLALVPDNYDCLANLGVAYLQSGDMELSAKCFQDLVLKDHNHPAALINYAA 307
Query: 243 LLLCKYGSVLAGAGANTGEGACLDQASAVNVAKECLLAALKADPKAAHIWANLANAYYLT 302
LLCK+ S +AGAGAN G A DQ + +NVAKECLLAAL++DPK+AH W NLAN+YY+
Sbjct: 308 ELLCKHSSTVAGAGANGGADASEDQKAPMNVAKECLLAALRSDPKSAHAWVNLANSYYMM 367
Query: 303 GDHRSSGKCLEKAAKLEPNCMSTRYAVAVSRIKDAERSQEPTEQLSWAGNEMASILREGD 362
GDHRSS KCLEKAAKL+PNCM+TR+AVAV RIKDAERSQ+ ++QLSWAGNEMAS++REG+
Sbjct: 368 GDHRSSSKCLEKAAKLDPNCMATRFAVAVQRIKDAERSQDASDQLSWAGNEMASVIREGE 427
Query: 363 PVQIEPPIAWAGFAAVQKTHHEVAAAFETEENELSKMEECA--GAGESAFLDQASAVN-- 418
V I+PPIAWAG A K HE+AAAF + NEL++MEE A ++ D AV
Sbjct: 428 SVPIDPPIAWAGLAMAHKAQHEIAAAFVADRNELTEMEERAVYSLKQAVTEDPEDAVRWH 487
Query: 419 -------------VAKECLLAALKADPKAAHIWANLANAYYLTGDHRSSGKCLEKVLMV 464
++++ L AA+ + ++ W+NL + L+ +H + + ++ L V
Sbjct: 488 QLGLHSLCSQQYKLSQKYLKAAVGRSRECSYAWSNLGISLQLSDEHSEAEEVYKRALTV 546
|
Source: Arabidopsis thaliana Species: Arabidopsis thaliana Genus: Arabidopsis Family: Brassicaceae Order: Brassicales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|449469594|ref|XP_004152504.1| PREDICTED: probable UDP-N-acetylglucosamine--peptide N-acetylglucosaminyltransferase SPINDLY-like [Cucumis sativus] | Back alignment and taxonomy information |
|---|
Score = 527 bits (1357), Expect = e-147, Method: Compositional matrix adjust.
Identities = 276/401 (68%), Positives = 336/401 (83%), Gaps = 2/401 (0%)
Query: 3 KEMDVAEVEGKKINKLGKCRSRISSKMDSALEFGVDADGDQSGLGTSSSSREEKVSSLKT 62
K+ + EVEG++++K+GKCRSR ++K++ +L+ D DGDQ G G S+S REEKVSSLKT
Sbjct: 70 KDTNAMEVEGRRVSKIGKCRSR-NNKVEYSLDSAADPDGDQHGQGVSTS-REEKVSSLKT 127
Query: 63 GLVHVARKMPKNAHAHFLLGLMYQRLGQPLKAVSSYEKAEEILLRCEADIARPELLSLVQ 122
GLVHVARKMPKNAHAHF+LGLMYQRLGQP KAV +YEKAEEILL+ + +I RPE LSL+Q
Sbjct: 128 GLVHVARKMPKNAHAHFILGLMYQRLGQPQKAVLAYEKAEEILLQSDVEIHRPEFLSLIQ 187
Query: 123 IHHAQCLLPESSGDNSLDKELEPEELEEILSKLKESMQSDTRQAVVWNTLGLILLKSGRL 182
IHHAQCLL ES GDN+ ++ELE EEL+++ SKLK SMQSD RQA VWNTLGL+LL +GR+
Sbjct: 188 IHHAQCLLLESVGDNTSNEELEQEELDDVCSKLKHSMQSDVRQAAVWNTLGLLLLTTGRV 247
Query: 183 QSSISVLSSLLAVDPNNCDCIGNLGIAYFQSGDMEQSAKCFQDLILKDQNHPAALINYAA 242
+S+I+VLSSLLA+ PNNCDC+GNLGIAY QSG+ME S KCFQ+LIL DQNH AAL+ YAA
Sbjct: 248 KSAITVLSSLLAIVPNNCDCLGNLGIAYLQSGNMELSEKCFQELILTDQNHLAALVYYAA 307
Query: 243 LLLCKYGSVLAGAGANTGEGACLDQASAVNVAKECLLAALKADPKAAHIWANLANAYYLT 302
LLCKYGS + GAGAN GEG ++ +NVAKECLLAALK DPKAAH WANLANAY++T
Sbjct: 308 FLLCKYGSTVVGAGANAGEGGVDEKVVGMNVAKECLLAALKVDPKAAHAWANLANAYFVT 367
Query: 303 GDHRSSGKCLEKAAKLEPNCMSTRYAVAVSRIKDAERSQEPTEQLSWAGNEMASILREGD 362
GDHRSS KCLEK AKLEPNCMS RYAVA+ R+KDAERSQ+ +EQLSWAGNEMAS++R+GD
Sbjct: 368 GDHRSSAKCLEKGAKLEPNCMSMRYAVAMHRLKDAERSQDRSEQLSWAGNEMASVIRDGD 427
Query: 363 PVQIEPPIAWAGFAAVQKTHHEVAAAFETEENELSKMEECA 403
+ I+ +AWAGF+ V K HE+AA F T+++EL + E+ A
Sbjct: 428 GLTIDHSVAWAGFSMVHKIQHEIAAGFRTDQSELREKEDHA 468
|
Source: Cucumis sativus Species: Cucumis sativus Genus: Cucumis Family: Cucurbitaceae Order: Cucurbitales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
Prediction of Gene Ontology (GO) Terms
Close Homologs with Gene Ontology terms Detected by BLAST
Original result of BLAST against Gene Ontology (AMIGO)
| ID |
Alignment graph |
Length |
Definition |
Q cover |
H cover |
Identity |
E-value |
| Query | 470 | ||||||
| TAIR|locus:2162027 | 649 | AT5G63200 "AT5G63200" [Arabido | 0.846 | 0.613 | 0.593 | 3.9e-125 |
| TAIR|locus:2162027 AT5G63200 "AT5G63200" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 1210 (431.0 bits), Expect = 3.9e-125, Sum P(2) = 3.9e-125
Identities = 238/401 (59%), Positives = 281/401 (70%)
Query: 3 KEMDVAEVEGKKINKLGKCRSRISSKMDSALEFGVDADGDQSGLGTXXXXXXXXXXXLKT 62
KE++ EVE KKI+K+GKCRSR SK++S+ + GVDADGD + G LK
Sbjct: 71 KEVEPGEVEAKKISKVGKCRSR--SKIESSSDCGVDADGDLANQGVPASREEKISN-LKM 127
Query: 63 GLVHVARKMPKNAHAHFLLGLMYQRLGQPLKAVSSYEKAEEILLRCEADIARPELLSLVQ 122
GL+HVARKMPKNAHAHF+LGLM+QRLGQ KA+ YEKAEEILL CE +IARPELL LVQ
Sbjct: 128 GLIHVARKMPKNAHAHFILGLMFQRLGQSQKAIPEYEKAEEILLGCEPEIARPELLLLVQ 187
Query: 123 IHHAQCLLPESSGDNXXXXXXXXXXXXXXXXXXXXXMQSDTRQAVVWNTLGLILLKXXXX 182
IHH QCLL + GD ++ D RQA VWNTLGL+LLK
Sbjct: 188 IHHGQCLLLDGFGDTDSVKELEGEELEEILSKLKDSIKLDVRQAAVWNTLGLMLLKAGCL 247
Query: 183 XXXXXXXXXXXAVDPNNCDCIGNLGIAYFQSGDMEQSAKCFQDLILKDQNHPAALINYAA 242
A+ P+N DC+ NLG+AY QSGDME SAKCFQDL+LKD NHPAALINYAA
Sbjct: 248 MSAISVLSSLLALVPDNYDCLANLGVAYLQSGDMELSAKCFQDLVLKDHNHPAALINYAA 307
Query: 243 LLLCKYGSVLAGAGANTGEGACLDQASAVNVAKECXXXXXXXXXXXXHIWANLANAYYLT 302
LLCK+ S +AGAGAN G A DQ + +NVAKEC H W NLAN+YY+
Sbjct: 308 ELLCKHSSTVAGAGANGGADASEDQKAPMNVAKECLLAALRSDPKSAHAWVNLANSYYMM 367
Query: 303 GDHRSSGKCLEKAAKLEPNCMSTRYAVAVSRIKDAERSQEPTEQLSWAGNEMASILREGD 362
GDHRSS KCLEKAAKL+PNCM+TR+AVAV RIKDAERSQ+ ++QLSWAGNEMAS++REG+
Sbjct: 368 GDHRSSSKCLEKAAKLDPNCMATRFAVAVQRIKDAERSQDASDQLSWAGNEMASVIREGE 427
Query: 363 PVQIEPPIAWAGFAAVQKTHHEVAAAFETEENELSKMEECA 403
V I+PPIAWAG A K HE+AAAF + NEL++MEE A
Sbjct: 428 SVPIDPPIAWAGLAMAHKAQHEIAAAFVADRNELTEMEERA 468
|
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Prediction of Enzyme Commission (EC) Number
EC Number Prediction by Annotation Transfer from SWISS-PROT Entries
Original result of BLAST against SWISS-PROT
No confident hit for EC number transfering in SWISSPROT detected by BLAST
EC Number Prediction by Ezypred Server
Original result from Ezypred Server
Fail to connect to Ezypred Server
EC Number Prediction by EFICAz Software
No EC number assignment, probably not an enzyme!
Prediction of Functionally Associated Proteins
Functionally Associated Proteins Detected by STRING
Original result from the STRING server
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 | GSVIVG00015910001 | SubName- Full=Chromosome chr17 scaffold_12, whole genome shotgun sequence; (658 aa) | |||||||||
(Vitis vinifera) | |||||||||||
Predicted Functional Partners: | |||||||||||
| Sorry, there are no predicted associations at the current settings. | |||||||||||
Conserved Domains and Related Protein Families
Conserved Domains Detected by RPS-BLAST
Original result of RPS-BLAST against CDD database part I
| ID | Alignment Graph | Length |
Definition |
E-value |
| Query | 470 | |||
| TIGR02917 | 899 | TIGR02917, PEP_TPR_lipo, putative PEP-CTERM system | 3e-08 | |
| cd00189 | 100 | cd00189, TPR, Tetratricopeptide repeat domain; typ | 9e-08 | |
| cd00189 | 100 | cd00189, TPR, Tetratricopeptide repeat domain; typ | 8e-07 | |
| TIGR02917 | 899 | TIGR02917, PEP_TPR_lipo, putative PEP-CTERM system | 1e-06 | |
| TIGR02917 | 899 | TIGR02917, PEP_TPR_lipo, putative PEP-CTERM system | 4e-06 | |
| TIGR02917 | 899 | TIGR02917, PEP_TPR_lipo, putative PEP-CTERM system | 7e-06 | |
| cd00189 | 100 | cd00189, TPR, Tetratricopeptide repeat domain; typ | 2e-05 | |
| COG5010 | 257 | COG5010, TadD, Flp pilus assembly protein TadD, co | 2e-05 | |
| TIGR02917 | 899 | TIGR02917, PEP_TPR_lipo, putative PEP-CTERM system | 3e-05 | |
| TIGR02917 | 899 | TIGR02917, PEP_TPR_lipo, putative PEP-CTERM system | 9e-05 | |
| cd00189 | 100 | cd00189, TPR, Tetratricopeptide repeat domain; typ | 9e-05 | |
| COG0457 | 291 | COG0457, NrfG, FOG: TPR repeat [General function p | 9e-05 | |
| pfam13414 | 69 | pfam13414, TPR_11, TPR repeat | 1e-04 | |
| TIGR02521 | 234 | TIGR02521, type_IV_pilW, type IV pilus biogenesis/ | 1e-04 | |
| TIGR02917 | 899 | TIGR02917, PEP_TPR_lipo, putative PEP-CTERM system | 0.002 | |
| cd00189 | 100 | cd00189, TPR, Tetratricopeptide repeat domain; typ | 0.003 | |
| pfam13414 | 69 | pfam13414, TPR_11, TPR repeat | 0.003 | |
| COG4783 | 484 | COG4783, COG4783, Putative Zn-dependent protease, | 0.003 | |
| PRK11447 | 1157 | PRK11447, PRK11447, cellulose synthase subunit Bcs | 0.004 |
| >gnl|CDD|234059 TIGR02917, PEP_TPR_lipo, putative PEP-CTERM system TPR-repeat lipoprotein | Back alignment and domain information |
|---|
Score = 56.2 bits (136), Expect = 3e-08
Identities = 81/422 (19%), Positives = 146/422 (34%), Gaps = 83/422 (19%)
Query: 72 PKNAHAHFLLGLMYQRLGQPLKAVSSYEKAEEILLRCEADIARPELLSLVQIHHAQCLLP 131
P+NA A LG+ G P +A++ E A + + ++ R +LL + + +
Sbjct: 394 PENAAARTQLGISKLSQGDPSEAIADLETA----AQLDPELGRADLL--LILSY------ 441
Query: 132 ESSGDNSLDKELEPEELEEILSKLKESMQSDTRQAVVWNTLGLILLKSGRLQSSISVLSS 191
L + ++ L+ K+ + A + N LG I L G L +
Sbjct: 442 -----------LRSGQFDKALAAAKKLEKKQPDNASLHNLLGAIYLGKGDLAKAREAFEK 490
Query: 192 LLAVDPNNCDCIGNLGIAYFQSGDMEQSAKCFQDLILKDQNHPAALINYAALLLCK---- 247
L+++P+ NL Q G+ + + + F+ ++ D + A++ A L L
Sbjct: 491 ALSIEPDFFPAAANLARIDIQEGNPDDAIQRFEKVLTIDPKNLRAILALAGLYLRTGNEE 550
Query: 248 --YGSVLAGAGANTGEGACL-----------DQASAVNVAKECLLAALKADPKAAHIWAN 294
+ A N E A+ + E A A P + W
Sbjct: 551 EAVAWLEKAAELNPQEIEPALALAQYYLGKGQLKKALAILNE----AADAAPDSPEAWLM 606
Query: 295 LANAYYLTGDHRSSGKCLEKAAKLEPNCMSTRYAVAVSRIKDAERSQEPTEQ-------- 346
L A GD + +K L+P+ A+A+ + DA + +
Sbjct: 607 LGRAQLAAGDLNKAVSSFKKLLALQPD-----SALALLLLADAYAVMKNYAKAITSLKRA 661
Query: 347 LSWAGNEMASILR----EGDPVQIEPPIAWAGFAAVQKTHHEVAAAFETEENELSKMEEC 402
L + + + + E A ++QK H + A FE E
Sbjct: 662 LELKPDNTEAQIGLAQLLLAAKRTES--AKKIAKSLQKQHPKAALGFELE---------- 709
Query: 403 AGAGESAFL--DQASAVNVAKECLLAALKADPKAAHIWANLANAYYLTGDHRSSGKCLEK 460
G+ D +A+ ++ ALK P + + L A +G+ + K LE
Sbjct: 710 ---GDLYLRQKDYPAAIQAYRK----ALKRAPSSQNA-IKLHRALLASGNTAEAVKTLEA 761
Query: 461 VL 462
L
Sbjct: 762 WL 763
|
This protein family occurs in strictly within a subset of Gram-negative bacterial species with the proposed PEP-CTERM/exosortase system, analogous to the LPXTG/sortase system common in Gram-positive bacteria. This protein occurs in a species if and only if a transmembrane histidine kinase (TIGR02916) and a DNA-binding response regulator (TIGR02915) also occur. The present of tetratricopeptide repeats (TPR) suggests protein-protein interaction, possibly for the regulation of PEP-CTERM protein expression, since many PEP-CTERM proteins in these genomes are preceded by a proposed DNA binding site for the response regulator. Length = 899 |
| >gnl|CDD|238112 cd00189, TPR, Tetratricopeptide repeat domain; typically contains 34 amino acids [WLF]-X(2)-[LIM]-[GAS]-X(2)-[YLF]-X(8)-[ASE]-X(3)-[FYL]- X(2)-[ASL]-X(4)-[PKE] is the consensus sequence; found in a variety of organisms including bacteria, cyanobacteria, yeast, fungi, plants, and humans in various subcellular locations; involved in a variety of functions including protein-protein interactions, but common features in the interaction partners have not been defined; involved in chaperone, cell-cycle, transciption, and protein transport complexes; the number of TPR motifs varies among proteins (1,3-11,13 15,16,19); 5-6 tandem repeats generate a right-handed helical structure with an amphipathic channel that is thought to accomodate an alpha-helix of a target protein; it has been proposed that TPR proteins preferably interact with WD-40 repeat proteins, but in many instances several TPR-proteins seem to aggregate to multi-protein complexes; examples of TPR-proteins include, Cdc16p, Cdc23p and Cdc27p components of the cyclosome/APC, the Pex5p/Pas10p receptor for peroxisomal targeting signals, the Tom70p co-receptor for mitochondrial targeting signals, Ser/Thr phosphatase 5C and the p110 subunit of O-GlcNAc transferase; three copies of the repeat are present here | Back alignment and domain information |
|---|
Score = 49.7 bits (119), Expect = 9e-08
Identities = 31/117 (26%), Positives = 52/117 (44%), Gaps = 21/117 (17%)
Query: 205 NLGIAYFQSGDMEQSAKCFQDLILKDQNHPAALINYAALLLCKYGSVLAGAGANTGEGAC 264
NLG Y++ GD +++ + ++ + D ++ A N AA G+
Sbjct: 5 NLGNLYYKLGDYDEALEYYEKALELDPDNADAYYNLAAAY------------YKLGK--- 49
Query: 265 LDQASAVNVAKECLLAALKADPKAAHIWANLANAYYLTGDHRSSGKCLEKAAKLEPN 321
++A E AL+ DP A + NL AYY G + + + EKA +L+PN
Sbjct: 50 YEEA------LEDYEKALELDPDNAKAYYNLGLAYYKLGKYEEALEAYEKALELDPN 100
|
Length = 100 |
| >gnl|CDD|238112 cd00189, TPR, Tetratricopeptide repeat domain; typically contains 34 amino acids [WLF]-X(2)-[LIM]-[GAS]-X(2)-[YLF]-X(8)-[ASE]-X(3)-[FYL]- X(2)-[ASL]-X(4)-[PKE] is the consensus sequence; found in a variety of organisms including bacteria, cyanobacteria, yeast, fungi, plants, and humans in various subcellular locations; involved in a variety of functions including protein-protein interactions, but common features in the interaction partners have not been defined; involved in chaperone, cell-cycle, transciption, and protein transport complexes; the number of TPR motifs varies among proteins (1,3-11,13 15,16,19); 5-6 tandem repeats generate a right-handed helical structure with an amphipathic channel that is thought to accomodate an alpha-helix of a target protein; it has been proposed that TPR proteins preferably interact with WD-40 repeat proteins, but in many instances several TPR-proteins seem to aggregate to multi-protein complexes; examples of TPR-proteins include, Cdc16p, Cdc23p and Cdc27p components of the cyclosome/APC, the Pex5p/Pas10p receptor for peroxisomal targeting signals, the Tom70p co-receptor for mitochondrial targeting signals, Ser/Thr phosphatase 5C and the p110 subunit of O-GlcNAc transferase; three copies of the repeat are present here | Back alignment and domain information |
|---|
Score = 47.0 bits (112), Expect = 8e-07
Identities = 18/80 (22%), Positives = 33/80 (41%)
Query: 168 VWNTLGLILLKSGRLQSSISVLSSLLAVDPNNCDCIGNLGIAYFQSGDMEQSAKCFQDLI 227
LG + K G ++ L +DP+N D NL AY++ G E++ + ++ +
Sbjct: 2 ALLNLGNLYYKLGDYDEALEYYEKALELDPDNADAYYNLAAAYYKLGKYEEALEDYEKAL 61
Query: 228 LKDQNHPAALINYAALLLCK 247
D ++ A N
Sbjct: 62 ELDPDNAKAYYNLGLAYYKL 81
|
Length = 100 |
| >gnl|CDD|234059 TIGR02917, PEP_TPR_lipo, putative PEP-CTERM system TPR-repeat lipoprotein | Back alignment and domain information |
|---|
Score = 50.9 bits (122), Expect = 1e-06
Identities = 63/283 (22%), Positives = 110/283 (38%), Gaps = 38/283 (13%)
Query: 70 KMPKNAHAHFLLGLMYQRLGQPLKAVSSYEKAEEI----------LLRCE-----ADIAR 114
K P NA H LLG +Y G KA ++EKA I L R + D A
Sbjct: 460 KQPDNASLHNLLGAIYLGKGDLAKAREAFEKALSIEPDFFPAAANLARIDIQEGNPDDAI 519
Query: 115 PELLSLVQI--HHAQCLLPESSGDNSLDKELEPEELEEILSKLKESMQSDTRQAVVWNTL 172
++ I + + +L + E EE ++ L+++ + + ++ L
Sbjct: 520 QRFEKVLTIDPKNLRAILALAGLYLRTGNE------EEAVAWLEKAAELNPQEIEPALAL 573
Query: 173 GLILLKSGRLQSSISVLSSLLAVDPNNCDCIGNLGIAYFQSGDMEQSAKCFQDLILKDQN 232
L G+L+ ++++L+ P++ + LG A +GD+ ++ F+ L+ +
Sbjct: 574 AQYYLGKGQLKKALAILNEAADAAPDSPEAWLMLGRAQLAAGDLNKAVSSFKKLLALQPD 633
Query: 233 HPAALI----------NYAALLLCKYGSVLAGAGANT----GEGACLDQASAVNVAKECL 278
AL+ NYA + L NT G L A AK+
Sbjct: 634 SALALLLLADAYAVMKNYAKAIT-SLKRALELKPDNTEAQIGLAQLLLAAKRTESAKKIA 692
Query: 279 LAALKADPKAAHIWANLANAYYLTGDHRSSGKCLEKAAKLEPN 321
+ K PKAA + + Y D+ ++ + KA K P+
Sbjct: 693 KSLQKQHPKAALGFELEGDLYLRQKDYPAAIQAYRKALKRAPS 735
|
This protein family occurs in strictly within a subset of Gram-negative bacterial species with the proposed PEP-CTERM/exosortase system, analogous to the LPXTG/sortase system common in Gram-positive bacteria. This protein occurs in a species if and only if a transmembrane histidine kinase (TIGR02916) and a DNA-binding response regulator (TIGR02915) also occur. The present of tetratricopeptide repeats (TPR) suggests protein-protein interaction, possibly for the regulation of PEP-CTERM protein expression, since many PEP-CTERM proteins in these genomes are preceded by a proposed DNA binding site for the response regulator. Length = 899 |
| >gnl|CDD|234059 TIGR02917, PEP_TPR_lipo, putative PEP-CTERM system TPR-repeat lipoprotein | Back alignment and domain information |
|---|
Score = 49.3 bits (118), Expect = 4e-06
Identities = 56/284 (19%), Positives = 103/284 (36%), Gaps = 40/284 (14%)
Query: 72 PKNAHAHFLLGLMYQRLGQPLKAVSSYEKAEEI----------LLRCEADIARPE-LLSL 120
P +A A LL Y + KA++S ++A E+ L + R E +
Sbjct: 632 PDSALALLLLADAYAVMKNYAKAITSLKRALELKPDNTEAQIGLAQLLLAAKRTESAKKI 691
Query: 121 VQIHHAQCLLPESSGDNSL--DKELEPEELEEILSKLKESMQ-SDTRQAVVWNTLGLILL 177
+ Q P+++ L D L ++ + +++++ + + Q + L LL
Sbjct: 692 AKSLQKQ--HPKAALGFELEGDLYLRQKDYPAAIQAYRKALKRAPSSQNAI--KLHRALL 747
Query: 178 KSGRLQSSISVLSSLLAVDPNNCDCIGNLGIAYFQSGDMEQSAKCFQDLILKDQNHPAAL 237
SG ++ L + L PN+ L Y D +++ K +Q ++ K ++ L
Sbjct: 748 ASGNTAEAVKTLEAWLKTHPNDAVLRTALAELYLAQKDYDKAIKHYQTVVKKAPDNAVVL 807
Query: 238 INYAALLLCKYGSVLAGAGANTGEGACLDQASAVNVAKECLLAALKADPKAAHIWANLAN 297
N A L L A E ALK P I L
Sbjct: 808 NNLAWLYLELKDP----------------------RALEYAERALKLAPNIPAILDTLGW 845
Query: 298 AYYLTGDHRSSGKCLEKAAKLEPNCMSTRYAVAVSRIKDAERSQ 341
G+ + L KA + P + RY +A++ + +++
Sbjct: 846 LLVEKGEADRALPLLRKAVNIAPEAAAIRYHLALALLATGRKAE 889
|
This protein family occurs in strictly within a subset of Gram-negative bacterial species with the proposed PEP-CTERM/exosortase system, analogous to the LPXTG/sortase system common in Gram-positive bacteria. This protein occurs in a species if and only if a transmembrane histidine kinase (TIGR02916) and a DNA-binding response regulator (TIGR02915) also occur. The present of tetratricopeptide repeats (TPR) suggests protein-protein interaction, possibly for the regulation of PEP-CTERM protein expression, since many PEP-CTERM proteins in these genomes are preceded by a proposed DNA binding site for the response regulator. Length = 899 |
| >gnl|CDD|234059 TIGR02917, PEP_TPR_lipo, putative PEP-CTERM system TPR-repeat lipoprotein | Back alignment and domain information |
|---|
Score = 48.5 bits (116), Expect = 7e-06
Identities = 55/275 (20%), Positives = 99/275 (36%), Gaps = 32/275 (11%)
Query: 72 PKNAHAHFLLGLMYQRLGQPLKAVSSYEKAEEILLRCEADIARPELLSLVQIH------H 125
P N A L G + LG A+++Y KA + A + + + H
Sbjct: 190 PGNVDALLLKGDLLLSLGNIELALAAYRKAIALRPNNIAVLLALATILIEAGEFEEAEKH 249
Query: 126 AQCLL---PESSGDNSLDK--ELEPEELEEILSKLKESMQSDTRQAVVWNTLGLILLKSG 180
A LL P S + L + + + E+ L+++++S G + G
Sbjct: 250 ADALLKKAPNSPLAHYLKALVDFQKKNYEDARETLQDALKSAPEYLPALLLAGASEYQLG 309
Query: 181 RLQSSISVLSSLLAVDPNNCDCIGNLGIAYFQSGDMEQSAKCFQDLILKDQNHPAALINY 240
L+ + L+ +L PN+ L + G ++++ + D + PAAL
Sbjct: 310 NLEQAYQYLNQILKYAPNSHQARRLLASIQLRLGRVDEAIATLSPALGLDPDDPAAL--- 366
Query: 241 AALLLCKYGSVLAGAGANTGEGACLDQASAVNVAKECLLAALKADPKAAHIWANLANAYY 300
+LL G G L +A+ + DP+ A L +
Sbjct: 367 -SLL----GEAYLALGDFEKAAEYLAKATEL-------------DPENAAARTQLGISKL 408
Query: 301 LTGDHRSSGKCLEKAAKLEPNCMSTRYAVAVSRIK 335
GD + LE AA+L+P + +S ++
Sbjct: 409 SQGDPSEAIADLETAAQLDPELGRADLLLILSYLR 443
|
This protein family occurs in strictly within a subset of Gram-negative bacterial species with the proposed PEP-CTERM/exosortase system, analogous to the LPXTG/sortase system common in Gram-positive bacteria. This protein occurs in a species if and only if a transmembrane histidine kinase (TIGR02916) and a DNA-binding response regulator (TIGR02915) also occur. The present of tetratricopeptide repeats (TPR) suggests protein-protein interaction, possibly for the regulation of PEP-CTERM protein expression, since many PEP-CTERM proteins in these genomes are preceded by a proposed DNA binding site for the response regulator. Length = 899 |
| >gnl|CDD|238112 cd00189, TPR, Tetratricopeptide repeat domain; typically contains 34 amino acids [WLF]-X(2)-[LIM]-[GAS]-X(2)-[YLF]-X(8)-[ASE]-X(3)-[FYL]- X(2)-[ASL]-X(4)-[PKE] is the consensus sequence; found in a variety of organisms including bacteria, cyanobacteria, yeast, fungi, plants, and humans in various subcellular locations; involved in a variety of functions including protein-protein interactions, but common features in the interaction partners have not been defined; involved in chaperone, cell-cycle, transciption, and protein transport complexes; the number of TPR motifs varies among proteins (1,3-11,13 15,16,19); 5-6 tandem repeats generate a right-handed helical structure with an amphipathic channel that is thought to accomodate an alpha-helix of a target protein; it has been proposed that TPR proteins preferably interact with WD-40 repeat proteins, but in many instances several TPR-proteins seem to aggregate to multi-protein complexes; examples of TPR-proteins include, Cdc16p, Cdc23p and Cdc27p components of the cyclosome/APC, the Pex5p/Pas10p receptor for peroxisomal targeting signals, the Tom70p co-receptor for mitochondrial targeting signals, Ser/Thr phosphatase 5C and the p110 subunit of O-GlcNAc transferase; three copies of the repeat are present here | Back alignment and domain information |
|---|
Score = 42.8 bits (101), Expect = 2e-05
Identities = 18/79 (22%), Positives = 40/79 (50%)
Query: 146 EELEEILSKLKESMQSDTRQAVVWNTLGLILLKSGRLQSSISVLSSLLAVDPNNCDCIGN 205
+ +E L +++++ D A + L K G+ + ++ L +DP+N N
Sbjct: 14 GDYDEALEYYEKALELDPDNADAYYNLAAAYYKLGKYEEALEDYEKALELDPDNAKAYYN 73
Query: 206 LGIAYFQSGDMEQSAKCFQ 224
LG+AY++ G E++ + ++
Sbjct: 74 LGLAYYKLGKYEEALEAYE 92
|
Length = 100 |
| >gnl|CDD|227343 COG5010, TadD, Flp pilus assembly protein TadD, contains TPR repeats [Intracellular trafficking and secretion] | Back alignment and domain information |
|---|
Score = 45.5 bits (108), Expect = 2e-05
Identities = 35/195 (17%), Positives = 55/195 (28%), Gaps = 27/195 (13%)
Query: 179 SGRLQSSISVLSSLLAVDPNNCDCIGNLGIAYFQSGDMEQSAKCFQDLILKDQNHPAALI 238
G SS++VL P + + + G ++G+ ++ + A
Sbjct: 79 RGDADSSLAVLQKSAIAYPKDRELLAAQGKNQIRNGNFGEAVSVLRKAARLAPTDWEAW- 137
Query: 239 NYAALLLCKYGSVLAGAGANTGEGACLDQASAVNVAKECLLAALKADPKAAHIWANLANA 298
GA LDQ + A+ AL+ P I NL +
Sbjct: 138 --------------------NLLGAALDQLGRFDEARRAYRQALELAPNEPSIANNLGMS 177
Query: 299 YYLTGDHRSSGKCLEKAAKLEPNCMSTRYAVA-----VSRIKDAERSQEPTEQLSWAGNE 353
L GD + L A R +A ++AE E LS
Sbjct: 178 LLLRGDLEDAETLLLPAYLSPAADSRVRQNLALVVGLQGDFREAEDIAVQ-ELLSEQAAN 236
Query: 354 MASILREGDPVQIEP 368
+ LR
Sbjct: 237 NVAALRAAASQSGAW 251
|
Length = 257 |
| >gnl|CDD|234059 TIGR02917, PEP_TPR_lipo, putative PEP-CTERM system TPR-repeat lipoprotein | Back alignment and domain information |
|---|
Score = 46.2 bits (110), Expect = 3e-05
Identities = 49/191 (25%), Positives = 75/191 (39%), Gaps = 16/191 (8%)
Query: 69 RKMPKNAHAHFLLGLMYQRLGQPLKAVSSYEKAEEILLRCEADIARPELL-SLVQIHHAQ 127
+K P +A A FLLG +Y LG A KA L + P L + + Q
Sbjct: 50 QKDPNDAEARFLLGKIYLALGDYAAAEKELRKALS--LGYPKNQVLPLLARAYLLQGKFQ 107
Query: 128 CLLPESSGDNSLDKELEPEELE-----EILSKLKESMQSDTRQAVVWNT------LGL-- 174
+L E G LD E E L + E Q QA+ + LGL
Sbjct: 108 QVLDELPGKTLLDDEGAAELLALRGLAYLGLGQLELAQKSYEQALAIDPRSLYAKLGLAQ 167
Query: 175 ILLKSGRLQSSISVLSSLLAVDPNNCDCIGNLGIAYFQSGDMEQSAKCFQDLILKDQNHP 234
+ L R + +++ +L DP N D + G G++E + ++ I N+
Sbjct: 168 LALAENRFDEARALIDEVLTADPGNVDALLLKGDLLLSLGNIELALAAYRKAIALRPNNI 227
Query: 235 AALINYAALLL 245
A L+ A +L+
Sbjct: 228 AVLLALATILI 238
|
This protein family occurs in strictly within a subset of Gram-negative bacterial species with the proposed PEP-CTERM/exosortase system, analogous to the LPXTG/sortase system common in Gram-positive bacteria. This protein occurs in a species if and only if a transmembrane histidine kinase (TIGR02916) and a DNA-binding response regulator (TIGR02915) also occur. The present of tetratricopeptide repeats (TPR) suggests protein-protein interaction, possibly for the regulation of PEP-CTERM protein expression, since many PEP-CTERM proteins in these genomes are preceded by a proposed DNA binding site for the response regulator. Length = 899 |
| >gnl|CDD|234059 TIGR02917, PEP_TPR_lipo, putative PEP-CTERM system TPR-repeat lipoprotein | Back alignment and domain information |
|---|
Score = 44.7 bits (106), Expect = 9e-05
Identities = 72/316 (22%), Positives = 109/316 (34%), Gaps = 45/316 (14%)
Query: 171 TLGLILLKSGRLQSSISVLSSLLAVDPNNCDCIGNLGIAYFQSGDMEQSAKCFQDLILKD 230
L I L+ GR+ +I+ LS L +DP++ + LG AY GD E++A+ D
Sbjct: 334 LLASIQLRLGRVDEAIATLSPALGLDPDDPAALSLLGEAYLALGDFEKAAEYLAKATELD 393
Query: 231 QNHPAALINYAALLLCKYGSVLAGAGANTGEGACLDQASAVN---VAKECLLA------- 280
+ AA L + K G + A L+ A+ ++ + LL
Sbjct: 394 PENAAA---RTQLGISKLSQ-----GDPSEAIADLETAAQLDPELGRADLLLILSYLRSG 445
Query: 281 ----ALKA-------DPKAAHIWANLANAYYLTGDHRSSGKCLEKAAKLEPNCMSTRYAV 329
AL A P A + L Y GD + + EKA +EP+ +
Sbjct: 446 QFDKALAAAKKLEKKQPDNASLHNLLGAIYLGKGDLAKAREAFEKALSIEPDFFPAAANL 505
Query: 330 AVSRIKDAERSQEPTEQLSWAGNEMASILREGDPVQIEPPIAWAGFAAVQKTHHEVAAAF 389
A R A +L DP + +A AG E A
Sbjct: 506 A--------RIDIQEGNPDDAIQRFEKVLTI-DPKNLRAILALAGLYLRTGNEEEAVAWL 556
Query: 390 ETEENELSKMEECAGAGESAFLDQ---ASAVNVAKECLLAALKADPKAAHIWANLANAYY 446
E + E A A +L + A+ + E A A P + W L A
Sbjct: 557 EKAAELNPQEIEPALALAQYYLGKGQLKKALAILNE----AADAAPDSPEAWLMLGRAQL 612
Query: 447 LTGDHRSSGKCLEKVL 462
GD + +K+L
Sbjct: 613 AAGDLNKAVSSFKKLL 628
|
This protein family occurs in strictly within a subset of Gram-negative bacterial species with the proposed PEP-CTERM/exosortase system, analogous to the LPXTG/sortase system common in Gram-positive bacteria. This protein occurs in a species if and only if a transmembrane histidine kinase (TIGR02916) and a DNA-binding response regulator (TIGR02915) also occur. The present of tetratricopeptide repeats (TPR) suggests protein-protein interaction, possibly for the regulation of PEP-CTERM protein expression, since many PEP-CTERM proteins in these genomes are preceded by a proposed DNA binding site for the response regulator. Length = 899 |
| >gnl|CDD|238112 cd00189, TPR, Tetratricopeptide repeat domain; typically contains 34 amino acids [WLF]-X(2)-[LIM]-[GAS]-X(2)-[YLF]-X(8)-[ASE]-X(3)-[FYL]- X(2)-[ASL]-X(4)-[PKE] is the consensus sequence; found in a variety of organisms including bacteria, cyanobacteria, yeast, fungi, plants, and humans in various subcellular locations; involved in a variety of functions including protein-protein interactions, but common features in the interaction partners have not been defined; involved in chaperone, cell-cycle, transciption, and protein transport complexes; the number of TPR motifs varies among proteins (1,3-11,13 15,16,19); 5-6 tandem repeats generate a right-handed helical structure with an amphipathic channel that is thought to accomodate an alpha-helix of a target protein; it has been proposed that TPR proteins preferably interact with WD-40 repeat proteins, but in many instances several TPR-proteins seem to aggregate to multi-protein complexes; examples of TPR-proteins include, Cdc16p, Cdc23p and Cdc27p components of the cyclosome/APC, the Pex5p/Pas10p receptor for peroxisomal targeting signals, the Tom70p co-receptor for mitochondrial targeting signals, Ser/Thr phosphatase 5C and the p110 subunit of O-GlcNAc transferase; three copies of the repeat are present here | Back alignment and domain information |
|---|
Score = 41.2 bits (97), Expect = 9e-05
Identities = 20/59 (33%), Positives = 31/59 (52%)
Query: 274 AKECLLAALKADPKAAHIWANLANAYYLTGDHRSSGKCLEKAAKLEPNCMSTRYAVAVS 332
A E AL+ DP A + NLA AYY G + + + EKA +L+P+ Y + ++
Sbjct: 19 ALEYYEKALELDPDNADAYYNLAAAYYKLGKYEEALEDYEKALELDPDNAKAYYNLGLA 77
|
Length = 100 |
| >gnl|CDD|223533 COG0457, NrfG, FOG: TPR repeat [General function prediction only] | Back alignment and domain information |
|---|
Score = 44.1 bits (102), Expect = 9e-05
Identities = 40/173 (23%), Positives = 72/173 (41%), Gaps = 13/173 (7%)
Query: 74 NAHAHFLLGLMYQRLGQPLKAVSSYEKAEEILLRCEADIARPELLSLVQIHHAQCLLPES 133
L LG L+A+ YE+A E+L + + + L
Sbjct: 87 ELELLPNLAEALLNLGLLLEALGKYEEALELLEK------------ALALDPDPDLAEAL 134
Query: 134 SGDNSLDKELEPEELEEILSKLKESMQSDTRQAVVWNTLGLILLKSGRLQSSISVLSSLL 193
+L + + EE E+ K E A LG +L GR + ++ +L L
Sbjct: 135 LALGALYELGDYEEALELYEKALELDPELNELAEALLALGALLEALGRYEEALELLEKAL 194
Query: 194 AVDPNN-CDCIGNLGIAYFQSGDMEQSAKCFQDLILKDQNHPAALINYAALLL 245
++P++ + + NLG+ Y + G E++ + ++ + D ++ AL N A LLL
Sbjct: 195 KLNPDDDAEALLNLGLLYLKLGKYEEALEYYEKALELDPDNAEALYNLALLLL 247
|
Length = 291 |
| >gnl|CDD|222112 pfam13414, TPR_11, TPR repeat | Back alignment and domain information |
|---|
Score = 40.0 bits (94), Expect = 1e-04
Identities = 17/57 (29%), Positives = 24/57 (42%)
Query: 164 RQAVVWNTLGLILLKSGRLQSSISVLSSLLAVDPNNCDCIGNLGIAYFQSGDMEQSA 220
A LG L K G +I L +DP+N + NL +AY + G + A
Sbjct: 1 DNAEALKNLGNALFKLGDYDEAIEAYEKALELDPDNAEAYYNLALAYLKLGKDYEEA 57
|
Length = 69 |
| >gnl|CDD|131573 TIGR02521, type_IV_pilW, type IV pilus biogenesis/stability protein PilW | Back alignment and domain information |
|---|
Score = 43.1 bits (102), Expect = 1e-04
Identities = 39/168 (23%), Positives = 66/168 (39%), Gaps = 21/168 (12%)
Query: 172 LGLILLKSGRLQSSISVLSSLLAVDPNNCDCIGNLGIAYFQSGDMEQSAKCFQDLILKDQ 231
L L L+ G L+ + L L DP++ L + Y Q G++E++ F+ + +
Sbjct: 37 LALGYLEQGDLEVAKENLDKALEHDPDDYLAYLALALYYQQLGELEKAEDSFRRALTLNP 96
Query: 232 NHPAALINY------------------AALLLCKYGSVLAGAGANTGEGACLDQASAVNV 273
N+ L NY A+ Y A + G C +A +
Sbjct: 97 NNGDVLNNYGTFLCQQGKYEQAMQQFEQAIEDPLYPQP---ARSLENAGLCALKAGDFDK 153
Query: 274 AKECLLAALKADPKAAHIWANLANAYYLTGDHRSSGKCLEKAAKLEPN 321
A++ L AL+ DP+ LA YYL G ++ + LE+ +
Sbjct: 154 AEKYLTRALQIDPQRPESLLELAELYYLRGQYKDARAYLERYQQTYNQ 201
|
Members of this family are designated PilF in ref (PMID:8973346) and PilW in ref (PMID:15612916). This outer membrane protein is required both for pilus stability and for pilus function such as adherence to human cells. Members of this family contain copies of the TPR (tetratricopeptide repeat) domain. Length = 234 |
| >gnl|CDD|234059 TIGR02917, PEP_TPR_lipo, putative PEP-CTERM system TPR-repeat lipoprotein | Back alignment and domain information |
|---|
Score = 40.5 bits (95), Expect = 0.002
Identities = 53/264 (20%), Positives = 91/264 (34%), Gaps = 46/264 (17%)
Query: 54 EEKVSSLKTGLVHVARKMPKNAHAHFLLGLMYQRLGQPLKAVSSYEKAEEILLRCEADIA 113
++ S K + ++ PK A L G +Y R A+ +Y KA +
Sbjct: 682 AKRTESAKKIAKSLQKQHPKAALGFELEGDLYLRQKDYPAAIQAYRKALKR--------- 732
Query: 114 RPELLSLVQIHHAQCLLPESSGDNSLDKELEPEELEEILSKLKESMQSDTRQAVVWNTLG 173
P + +++H A SG+ E ++ + + LK AV+ L
Sbjct: 733 APSSQNAIKLHRALLA----SGNT-------AEAVKTLEAWLKT----HPNDAVLRTALA 777
Query: 174 LILLKSGRLQSSISVLSSLLAVDPNNCDCIGNLGIAYFQSGDMEQSAKCFQDLILKDQNH 233
+ L +I +++ P+N + NL Y + D + L L
Sbjct: 778 ELYLAQKDYDKAIKHYQTVVKKAPDNAVVLNNLAWLYLELKDPRALEYAERALKLAPNIP 837
Query: 234 PAALINYAALLLCKYGSVLAGAGANTGEGACLDQASAVNVAKECLLAALKADPKAAHIWA 293
+L G +L G + A+ + L A+ P+AA I
Sbjct: 838 A---------ILDTLGWLLVEKG---------EADRALPL----LRKAVNIAPEAAAIRY 875
Query: 294 NLANAYYLTGDHRSSGKCLEKAAK 317
+LA A TG + K L+K
Sbjct: 876 HLALALLATGRKAEARKELDKLLN 899
|
This protein family occurs in strictly within a subset of Gram-negative bacterial species with the proposed PEP-CTERM/exosortase system, analogous to the LPXTG/sortase system common in Gram-positive bacteria. This protein occurs in a species if and only if a transmembrane histidine kinase (TIGR02916) and a DNA-binding response regulator (TIGR02915) also occur. The present of tetratricopeptide repeats (TPR) suggests protein-protein interaction, possibly for the regulation of PEP-CTERM protein expression, since many PEP-CTERM proteins in these genomes are preceded by a proposed DNA binding site for the response regulator. Length = 899 |
| >gnl|CDD|238112 cd00189, TPR, Tetratricopeptide repeat domain; typically contains 34 amino acids [WLF]-X(2)-[LIM]-[GAS]-X(2)-[YLF]-X(8)-[ASE]-X(3)-[FYL]- X(2)-[ASL]-X(4)-[PKE] is the consensus sequence; found in a variety of organisms including bacteria, cyanobacteria, yeast, fungi, plants, and humans in various subcellular locations; involved in a variety of functions including protein-protein interactions, but common features in the interaction partners have not been defined; involved in chaperone, cell-cycle, transciption, and protein transport complexes; the number of TPR motifs varies among proteins (1,3-11,13 15,16,19); 5-6 tandem repeats generate a right-handed helical structure with an amphipathic channel that is thought to accomodate an alpha-helix of a target protein; it has been proposed that TPR proteins preferably interact with WD-40 repeat proteins, but in many instances several TPR-proteins seem to aggregate to multi-protein complexes; examples of TPR-proteins include, Cdc16p, Cdc23p and Cdc27p components of the cyclosome/APC, the Pex5p/Pas10p receptor for peroxisomal targeting signals, the Tom70p co-receptor for mitochondrial targeting signals, Ser/Thr phosphatase 5C and the p110 subunit of O-GlcNAc transferase; three copies of the repeat are present here | Back alignment and domain information |
|---|
Score = 36.6 bits (85), Expect = 0.003
Identities = 17/43 (39%), Positives = 22/43 (51%)
Query: 420 AKECLLAALKADPKAAHIWANLANAYYLTGDHRSSGKCLEKVL 462
A E AL+ DP A + NLA AYY G + + + EK L
Sbjct: 19 ALEYYEKALELDPDNADAYYNLAAAYYKLGKYEEALEDYEKAL 61
|
Length = 100 |
| >gnl|CDD|222112 pfam13414, TPR_11, TPR repeat | Back alignment and domain information |
|---|
Score = 35.8 bits (83), Expect = 0.003
Identities = 19/48 (39%), Positives = 24/48 (50%), Gaps = 1/48 (2%)
Query: 274 AKECLLAALKADPKAAHIWANLANAYYLTGDHRSSG-KCLEKAAKLEP 320
A E AL+ DP A + NLA AY G + LEKA +L+P
Sbjct: 22 AIEAYEKALELDPDNAEAYYNLALAYLKLGKDYEEALEDLEKALELDP 69
|
Length = 69 |
| >gnl|CDD|227122 COG4783, COG4783, Putative Zn-dependent protease, contains TPR repeats [General function prediction only] | Back alignment and domain information |
|---|
Score = 39.7 bits (93), Expect = 0.003
Identities = 34/162 (20%), Positives = 66/162 (40%), Gaps = 7/162 (4%)
Query: 60 LKTGLVHVARKMPKNAHAHFLLG---LMYQRLGQPLKAVSSYEKAEEILLRCEADIARPE 116
L + +AR + + + + + + Y +A + L + D A
Sbjct: 269 LDSPDFQLARARIRAKYEALPNQQAADLLAKRSKRGGLAAQYGRALQTYLAGQYDEALKL 328
Query: 117 LLSLVQIHHAQCLLPESSGDNSLDKELEPEELEEILSKLKESMQSDTRQAVVWNTLGLIL 176
L L+ E +GD + LE + +E + +LK+++ D ++ L L
Sbjct: 329 LQPLIAAQPDNPYYLELAGD--IL--LEANKAKEAIERLKKALALDPNSPLLQLNLAQAL 384
Query: 177 LKSGRLQSSISVLSSLLAVDPNNCDCIGNLGIAYFQSGDMEQ 218
LK G+ Q +I +L+ L DP + + L AY + G+ +
Sbjct: 385 LKGGKPQEAIRILNRYLFNDPEDPNGWDLLAQAYAELGNRAE 426
|
Length = 484 |
| >gnl|CDD|183140 PRK11447, PRK11447, cellulose synthase subunit BcsC; Provisional | Back alignment and domain information |
|---|
Score = 39.7 bits (93), Expect = 0.004
Identities = 17/62 (27%), Positives = 30/62 (48%)
Query: 173 GLILLKSGRLQSSISVLSSLLAVDPNNCDCIGNLGIAYFQSGDMEQSAKCFQDLILKDQN 232
GL + SG+ +I L + +P + + +G LG AY Q GD ++ F+ + D +
Sbjct: 276 GLAAVDSGQGGKAIPELQQAVRANPKDSEALGALGQAYSQQGDRARAVAQFEKALALDPH 335
Query: 233 HP 234
Sbjct: 336 SS 337
|
Length = 1157 |
Conserved Domains Detected by HHsearch
Original result of HHsearch against CDD database
| ID | Alignment Graph | Length |
Definition |
Probability |
| Query | 470 | |||
| KOG4626 | 966 | consensus O-linked N-acetylglucosamine transferase | 100.0 | |
| KOG4626 | 966 | consensus O-linked N-acetylglucosamine transferase | 100.0 | |
| TIGR00990 | 615 | 3a0801s09 mitochondrial precursor proteins import | 100.0 | |
| TIGR02917 | 899 | PEP_TPR_lipo putative PEP-CTERM system TPR-repeat | 100.0 | |
| TIGR02917 | 899 | PEP_TPR_lipo putative PEP-CTERM system TPR-repeat | 100.0 | |
| PRK11447 | 1157 | cellulose synthase subunit BcsC; Provisional | 100.0 | |
| PRK11447 | 1157 | cellulose synthase subunit BcsC; Provisional | 100.0 | |
| TIGR00990 | 615 | 3a0801s09 mitochondrial precursor proteins import | 100.0 | |
| PRK15174 | 656 | Vi polysaccharide export protein VexE; Provisional | 100.0 | |
| KOG0547 | 606 | consensus Translocase of outer mitochondrial membr | 100.0 | |
| KOG2002 | 1018 | consensus TPR-containing nuclear phosphoprotein th | 100.0 | |
| PRK15174 | 656 | Vi polysaccharide export protein VexE; Provisional | 100.0 | |
| PRK10049 | 765 | pgaA outer membrane protein PgaA; Provisional | 99.98 | |
| KOG2002 | 1018 | consensus TPR-containing nuclear phosphoprotein th | 99.97 | |
| PRK09782 | 987 | bacteriophage N4 receptor, outer membrane subunit; | 99.97 | |
| KOG1126 | 638 | consensus DNA-binding cell division cycle control | 99.97 | |
| KOG1155 | 559 | consensus Anaphase-promoting complex (APC), Cdc23 | 99.96 | |
| KOG1126 | 638 | consensus DNA-binding cell division cycle control | 99.96 | |
| PRK11788 | 389 | tetratricopeptide repeat protein; Provisional | 99.96 | |
| PRK10049 | 765 | pgaA outer membrane protein PgaA; Provisional | 99.96 | |
| PRK09782 | 987 | bacteriophage N4 receptor, outer membrane subunit; | 99.95 | |
| KOG0624 | 504 | consensus dsRNA-activated protein kinase inhibitor | 99.95 | |
| KOG1173 | 611 | consensus Anaphase-promoting complex (APC), Cdc16 | 99.95 | |
| PRK14574 | 822 | hmsH outer membrane protein; Provisional | 99.95 | |
| PRK11788 | 389 | tetratricopeptide repeat protein; Provisional | 99.94 | |
| KOG1155 | 559 | consensus Anaphase-promoting complex (APC), Cdc23 | 99.94 | |
| KOG2076 | 895 | consensus RNA polymerase III transcription factor | 99.94 | |
| KOG0547 | 606 | consensus Translocase of outer mitochondrial membr | 99.94 | |
| KOG0495 | 913 | consensus HAT repeat protein [RNA processing and m | 99.93 | |
| KOG0548 | 539 | consensus Molecular co-chaperone STI1 [Posttransla | 99.93 | |
| KOG4162 | 799 | consensus Predicted calmodulin-binding protein [Si | 99.92 | |
| PF13429 | 280 | TPR_15: Tetratricopeptide repeat; PDB: 2VQ2_A 2PL2 | 99.92 | |
| KOG1173 | 611 | consensus Anaphase-promoting complex (APC), Cdc16 | 99.91 | |
| PF13429 | 280 | TPR_15: Tetratricopeptide repeat; PDB: 2VQ2_A 2PL2 | 99.91 | |
| KOG2003 | 840 | consensus TPR repeat-containing protein [General f | 99.91 | |
| PRK12370 | 553 | invasion protein regulator; Provisional | 99.91 | |
| KOG1125 | 579 | consensus TPR repeat-containing protein [General f | 99.91 | |
| TIGR00540 | 409 | hemY_coli hemY protein. This is an uncharacterized | 99.9 | |
| PRK14574 | 822 | hmsH outer membrane protein; Provisional | 99.9 | |
| KOG2076 | 895 | consensus RNA polymerase III transcription factor | 99.9 | |
| PRK11189 | 296 | lipoprotein NlpI; Provisional | 99.9 | |
| PRK12370 | 553 | invasion protein regulator; Provisional | 99.89 | |
| KOG0495 | 913 | consensus HAT repeat protein [RNA processing and m | 99.89 | |
| PRK11189 | 296 | lipoprotein NlpI; Provisional | 99.89 | |
| KOG1127 | 1238 | consensus TPR repeat-containing protein [RNA proce | 99.89 | |
| KOG0548 | 539 | consensus Molecular co-chaperone STI1 [Posttransla | 99.89 | |
| KOG1125 | 579 | consensus TPR repeat-containing protein [General f | 99.88 | |
| PLN03081 | 697 | pentatricopeptide (PPR) repeat-containing protein; | 99.88 | |
| KOG2003 | 840 | consensus TPR repeat-containing protein [General f | 99.88 | |
| PRK10747 | 398 | putative protoheme IX biogenesis protein; Provisio | 99.88 | |
| PLN03077 | 857 | Protein ECB2; Provisional | 99.87 | |
| TIGR02521 | 234 | type_IV_pilW type IV pilus biogenesis/stability pr | 99.87 | |
| PLN03218 | 1060 | maturation of RBCL 1; Provisional | 99.87 | |
| KOG0624 | 504 | consensus dsRNA-activated protein kinase inhibitor | 99.86 | |
| KOG1174 | 564 | consensus Anaphase-promoting complex (APC), subuni | 99.86 | |
| COG3063 | 250 | PilF Tfp pilus assembly protein PilF [Cell motilit | 99.86 | |
| COG3063 | 250 | PilF Tfp pilus assembly protein PilF [Cell motilit | 99.86 | |
| KOG1129 | 478 | consensus TPR repeat-containing protein [General f | 99.86 | |
| TIGR00540 | 409 | hemY_coli hemY protein. This is an uncharacterized | 99.86 | |
| TIGR02521 | 234 | type_IV_pilW type IV pilus biogenesis/stability pr | 99.86 | |
| KOG0550 | 486 | consensus Molecular chaperone (DnaJ superfamily) [ | 99.85 | |
| KOG1156 | 700 | consensus N-terminal acetyltransferase [Chromatin | 99.85 | |
| PLN02789 | 320 | farnesyltranstransferase | 99.85 | |
| KOG0550 | 486 | consensus Molecular chaperone (DnaJ superfamily) [ | 99.85 | |
| KOG1174 | 564 | consensus Anaphase-promoting complex (APC), subuni | 99.84 | |
| PLN03218 | 1060 | maturation of RBCL 1; Provisional | 99.84 | |
| KOG1156 | 700 | consensus N-terminal acetyltransferase [Chromatin | 99.84 | |
| KOG1129 | 478 | consensus TPR repeat-containing protein [General f | 99.83 | |
| PLN02789 | 320 | farnesyltranstransferase | 99.83 | |
| PRK10747 | 398 | putative protoheme IX biogenesis protein; Provisio | 99.83 | |
| KOG1127 | 1238 | consensus TPR repeat-containing protein [RNA proce | 99.83 | |
| KOG1915 | 677 | consensus Cell cycle control protein (crooked neck | 99.83 | |
| COG2956 | 389 | Predicted N-acetylglucosaminyl transferase [Carboh | 99.82 | |
| cd05804 | 355 | StaR_like StaR_like; a well-conserved protein foun | 99.82 | |
| PLN03081 | 697 | pentatricopeptide (PPR) repeat-containing protein; | 99.82 | |
| KOG4162 | 799 | consensus Predicted calmodulin-binding protein [Si | 99.81 | |
| PLN03077 | 857 | Protein ECB2; Provisional | 99.8 | |
| KOG1840 | 508 | consensus Kinesin light chain [Cytoskeleton] | 99.8 | |
| COG2956 | 389 | Predicted N-acetylglucosaminyl transferase [Carboh | 99.79 | |
| KOG1840 | 508 | consensus Kinesin light chain [Cytoskeleton] | 99.78 | |
| KOG1915 | 677 | consensus Cell cycle control protein (crooked neck | 99.76 | |
| cd05804 | 355 | StaR_like StaR_like; a well-conserved protein foun | 99.75 | |
| PRK15359 | 144 | type III secretion system chaperone protein SscB; | 99.74 | |
| TIGR03302 | 235 | OM_YfiO outer membrane assembly lipoprotein YfiO. | 99.74 | |
| TIGR03302 | 235 | OM_YfiO outer membrane assembly lipoprotein YfiO. | 99.73 | |
| KOG2376 | 652 | consensus Signal recognition particle, subunit Srp | 99.73 | |
| PF12569 | 517 | NARP1: NMDA receptor-regulated protein 1 ; InterPr | 99.72 | |
| PRK15359 | 144 | type III secretion system chaperone protein SscB; | 99.71 | |
| KOG3785 | 557 | consensus Uncharacterized conserved protein [Funct | 99.69 | |
| PRK10370 | 198 | formate-dependent nitrite reductase complex subuni | 99.69 | |
| PRK10370 | 198 | formate-dependent nitrite reductase complex subuni | 99.69 | |
| PRK14720 | 906 | transcript cleavage factor/unknown domain fusion p | 99.69 | |
| KOG3785 | 557 | consensus Uncharacterized conserved protein [Funct | 99.68 | |
| KOG1130 | 639 | consensus Predicted G-alpha GTPase interaction pro | 99.64 | |
| KOG2376 | 652 | consensus Signal recognition particle, subunit Srp | 99.64 | |
| PRK15179 | 694 | Vi polysaccharide biosynthesis protein TviE; Provi | 99.64 | |
| KOG3060 | 289 | consensus Uncharacterized conserved protein [Funct | 99.64 | |
| COG3071 | 400 | HemY Uncharacterized enzyme of heme biosynthesis [ | 99.62 | |
| COG5010 | 257 | TadD Flp pilus assembly protein TadD, contains TPR | 99.61 | |
| KOG2047 | 835 | consensus mRNA splicing factor [RNA processing and | 99.6 | |
| KOG3060 | 289 | consensus Uncharacterized conserved protein [Funct | 99.6 | |
| COG5010 | 257 | TadD Flp pilus assembly protein TadD, contains TPR | 99.59 | |
| KOG1130 | 639 | consensus Predicted G-alpha GTPase interaction pro | 99.59 | |
| KOG4340 | 459 | consensus Uncharacterized conserved protein [Funct | 99.59 | |
| PRK04841 | 903 | transcriptional regulator MalT; Provisional | 99.58 | |
| TIGR02552 | 135 | LcrH_SycD type III secretion low calcium response | 99.58 | |
| TIGR02552 | 135 | LcrH_SycD type III secretion low calcium response | 99.58 | |
| PF12569 | 517 | NARP1: NMDA receptor-regulated protein 1 ; InterPr | 99.57 | |
| KOG0553 | 304 | consensus TPR repeat-containing protein [General f | 99.54 | |
| PRK15179 | 694 | Vi polysaccharide biosynthesis protein TviE; Provi | 99.53 | |
| KOG0553 | 304 | consensus TPR repeat-containing protein [General f | 99.51 | |
| COG3071 | 400 | HemY Uncharacterized enzyme of heme biosynthesis [ | 99.51 | |
| KOG1128 | 777 | consensus Uncharacterized conserved protein, conta | 99.5 | |
| PRK14720 | 906 | transcript cleavage factor/unknown domain fusion p | 99.5 | |
| KOG1128 | 777 | consensus Uncharacterized conserved protein, conta | 99.48 | |
| PRK15363 | 157 | pathogenicity island 2 chaperone protein SscA; Pro | 99.48 | |
| PRK15363 | 157 | pathogenicity island 2 chaperone protein SscA; Pro | 99.47 | |
| COG4783 | 484 | Putative Zn-dependent protease, contains TPR repea | 99.42 | |
| PF04733 | 290 | Coatomer_E: Coatomer epsilon subunit; InterPro: IP | 99.38 | |
| KOG4340 | 459 | consensus Uncharacterized conserved protein [Funct | 99.38 | |
| PLN03088 | 356 | SGT1, suppressor of G2 allele of SKP1; Provisional | 99.38 | |
| KOG2047 | 835 | consensus mRNA splicing factor [RNA processing and | 99.36 | |
| PRK04841 | 903 | transcriptional regulator MalT; Provisional | 99.36 | |
| PLN03088 | 356 | SGT1, suppressor of G2 allele of SKP1; Provisional | 99.35 | |
| PF04733 | 290 | Coatomer_E: Coatomer epsilon subunit; InterPro: IP | 99.35 | |
| COG4235 | 287 | Cytochrome c biogenesis factor [Posttranslational | 99.33 | |
| PRK10866 | 243 | outer membrane biogenesis protein BamD; Provisiona | 99.33 | |
| COG4783 | 484 | Putative Zn-dependent protease, contains TPR repea | 99.33 | |
| PF13525 | 203 | YfiO: Outer membrane lipoprotein; PDB: 3TGO_A 3Q5M | 99.3 | |
| CHL00033 | 168 | ycf3 photosystem I assembly protein Ycf3 | 99.29 | |
| PF13414 | 69 | TPR_11: TPR repeat; PDB: 2HO1_B 2FI7_B 2DBA_A 3Q4A | 99.27 | |
| KOG1941 | 518 | consensus Acetylcholine receptor-associated protei | 99.27 | |
| PF13525 | 203 | YfiO: Outer membrane lipoprotein; PDB: 3TGO_A 3Q5M | 99.27 | |
| COG4235 | 287 | Cytochrome c biogenesis factor [Posttranslational | 99.27 | |
| TIGR02795 | 119 | tol_pal_ybgF tol-pal system protein YbgF. Members | 99.26 | |
| PRK10866 | 243 | outer membrane biogenesis protein BamD; Provisiona | 99.25 | |
| PRK02603 | 172 | photosystem I assembly protein Ycf3; Provisional | 99.23 | |
| TIGR02795 | 119 | tol_pal_ybgF tol-pal system protein YbgF. Members | 99.23 | |
| PF13414 | 69 | TPR_11: TPR repeat; PDB: 2HO1_B 2FI7_B 2DBA_A 3Q4A | 99.21 | |
| PF12895 | 84 | Apc3: Anaphase-promoting complex, cyclosome, subun | 99.21 | |
| PF09976 | 145 | TPR_21: Tetratricopeptide repeat; InterPro: IPR018 | 99.21 | |
| PF13432 | 65 | TPR_16: Tetratricopeptide repeat; PDB: 3CVP_A 3CVL | 99.19 | |
| PRK10153 | 517 | DNA-binding transcriptional activator CadC; Provis | 99.18 | |
| PF09976 | 145 | TPR_21: Tetratricopeptide repeat; InterPro: IPR018 | 99.18 | |
| cd00189 | 100 | TPR Tetratricopeptide repeat domain; typically con | 99.17 | |
| PRK11906 | 458 | transcriptional regulator; Provisional | 99.17 | |
| cd00189 | 100 | TPR Tetratricopeptide repeat domain; typically con | 99.17 | |
| COG4785 | 297 | NlpI Lipoprotein NlpI, contains TPR repeats [Gener | 99.17 | |
| COG4785 | 297 | NlpI Lipoprotein NlpI, contains TPR repeats [Gener | 99.15 | |
| PF14938 | 282 | SNAP: Soluble NSF attachment protein, SNAP; PDB: 1 | 99.15 | |
| PF14938 | 282 | SNAP: Soluble NSF attachment protein, SNAP; PDB: 1 | 99.12 | |
| CHL00033 | 168 | ycf3 photosystem I assembly protein Ycf3 | 99.12 | |
| PF13432 | 65 | TPR_16: Tetratricopeptide repeat; PDB: 3CVP_A 3CVL | 99.12 | |
| PRK02603 | 172 | photosystem I assembly protein Ycf3; Provisional | 99.12 | |
| PRK11906 | 458 | transcriptional regulator; Provisional | 99.11 | |
| KOG0543 | 397 | consensus FKBP-type peptidyl-prolyl cis-trans isom | 99.1 | |
| KOG1070 | 1710 | consensus rRNA processing protein Rrp5 [RNA proces | 99.09 | |
| PRK10803 | 263 | tol-pal system protein YbgF; Provisional | 99.08 | |
| PRK10153 | 517 | DNA-binding transcriptional activator CadC; Provis | 99.07 | |
| KOG0543 | 397 | consensus FKBP-type peptidyl-prolyl cis-trans isom | 99.07 | |
| PF12895 | 84 | Apc3: Anaphase-promoting complex, cyclosome, subun | 99.07 | |
| PRK15331 | 165 | chaperone protein SicA; Provisional | 99.07 | |
| PF12688 | 120 | TPR_5: Tetratrico peptide repeat | 99.04 | |
| COG0457 | 291 | NrfG FOG: TPR repeat [General function prediction | 99.03 | |
| PRK15331 | 165 | chaperone protein SicA; Provisional | 99.02 | |
| KOG4648 | 536 | consensus Uncharacterized conserved protein, conta | 99.01 | |
| KOG1941 | 518 | consensus Acetylcholine receptor-associated protei | 99.01 | |
| KOG3617 | 1416 | consensus WD40 and TPR repeat-containing protein [ | 99.01 | |
| PRK10803 | 263 | tol-pal system protein YbgF; Provisional | 99.0 | |
| PF09295 | 395 | ChAPs: ChAPs (Chs5p-Arf1p-binding proteins); Inter | 98.99 | |
| KOG1070 | 1710 | consensus rRNA processing protein Rrp5 [RNA proces | 98.98 | |
| COG4105 | 254 | ComL DNA uptake lipoprotein [General function pred | 98.97 | |
| KOG4648 | 536 | consensus Uncharacterized conserved protein, conta | 98.97 | |
| COG0457 | 291 | NrfG FOG: TPR repeat [General function prediction | 98.95 | |
| PF14559 | 68 | TPR_19: Tetratricopeptide repeat; PDB: 2R5S_A 3QDN | 98.94 | |
| PF14559 | 68 | TPR_19: Tetratricopeptide repeat; PDB: 2R5S_A 3QDN | 98.93 | |
| PF13371 | 73 | TPR_9: Tetratricopeptide repeat | 98.91 | |
| KOG3617 | 1416 | consensus WD40 and TPR repeat-containing protein [ | 98.9 | |
| COG1729 | 262 | Uncharacterized protein conserved in bacteria [Fun | 98.89 | |
| KOG3081 | 299 | consensus Vesicle coat complex COPI, epsilon subun | 98.88 | |
| KOG2053 | 932 | consensus Mitochondrial inheritance and actin cyto | 98.88 | |
| PF12688 | 120 | TPR_5: Tetratrico peptide repeat | 98.88 | |
| KOG4234 | 271 | consensus TPR repeat-containing protein [General f | 98.87 | |
| PF09295 | 395 | ChAPs: ChAPs (Chs5p-Arf1p-binding proteins); Inter | 98.84 | |
| KOG2053 | 932 | consensus Mitochondrial inheritance and actin cyto | 98.84 | |
| KOG3081 | 299 | consensus Vesicle coat complex COPI, epsilon subun | 98.83 | |
| COG3898 | 531 | Uncharacterized membrane-bound protein [Function u | 98.81 | |
| PF13371 | 73 | TPR_9: Tetratricopeptide repeat | 98.79 | |
| KOG4234 | 271 | consensus TPR repeat-containing protein [General f | 98.78 | |
| COG4700 | 251 | Uncharacterized protein conserved in bacteria cont | 98.78 | |
| COG4105 | 254 | ComL DNA uptake lipoprotein [General function pred | 98.77 | |
| PF13512 | 142 | TPR_18: Tetratricopeptide repeat | 98.73 | |
| PF13424 | 78 | TPR_12: Tetratricopeptide repeat; PDB: 3RO2_A 3Q15 | 98.72 | |
| PF13512 | 142 | TPR_18: Tetratricopeptide repeat | 98.71 | |
| COG1729 | 262 | Uncharacterized protein conserved in bacteria [Fun | 98.71 | |
| PLN03098 | 453 | LPA1 LOW PSII ACCUMULATION1; Provisional | 98.71 | |
| COG3898 | 531 | Uncharacterized membrane-bound protein [Function u | 98.7 | |
| KOG2471 | 696 | consensus TPR repeat-containing protein [General f | 98.69 | |
| PF13424 | 78 | TPR_12: Tetratricopeptide repeat; PDB: 3RO2_A 3Q15 | 98.67 | |
| PLN03098 | 453 | LPA1 LOW PSII ACCUMULATION1; Provisional | 98.65 | |
| PF06552 | 186 | TOM20_plant: Plant specific mitochondrial import r | 98.63 | |
| PF06552 | 186 | TOM20_plant: Plant specific mitochondrial import r | 98.58 | |
| KOG1586 | 288 | consensus Protein required for fusion of vesicles | 98.56 | |
| COG4700 | 251 | Uncharacterized protein conserved in bacteria cont | 98.55 | |
| KOG1914 | 656 | consensus mRNA cleavage and polyadenylation factor | 98.52 | |
| KOG4555 | 175 | consensus TPR repeat-containing protein [Function | 98.52 | |
| KOG2796 | 366 | consensus Uncharacterized conserved protein [Funct | 98.48 | |
| KOG4642 | 284 | consensus Chaperone-dependent E3 ubiquitin protein | 98.47 | |
| PF13431 | 34 | TPR_17: Tetratricopeptide repeat | 98.44 | |
| PF04184 | 539 | ST7: ST7 protein; InterPro: IPR007311 The ST7 (for | 98.43 | |
| KOG1586 | 288 | consensus Protein required for fusion of vesicles | 98.43 | |
| KOG2471 | 696 | consensus TPR repeat-containing protein [General f | 98.42 | |
| KOG4642 | 284 | consensus Chaperone-dependent E3 ubiquitin protein | 98.42 | |
| PF13428 | 44 | TPR_14: Tetratricopeptide repeat | 98.39 | |
| KOG4555 | 175 | consensus TPR repeat-containing protein [Function | 98.37 | |
| PF13428 | 44 | TPR_14: Tetratricopeptide repeat | 98.34 | |
| PF05843 | 280 | Suf: Suppressor of forked protein (Suf); InterPro: | 98.33 | |
| KOG1550 | 552 | consensus Extracellular protein SEL-1 and related | 98.3 | |
| KOG2796 | 366 | consensus Uncharacterized conserved protein [Funct | 98.3 | |
| KOG2610 | 491 | consensus Uncharacterized conserved protein [Funct | 98.28 | |
| PF13431 | 34 | TPR_17: Tetratricopeptide repeat | 98.26 | |
| KOG3616 | 1636 | consensus Selective LIM binding factor [Transcript | 98.23 | |
| KOG3616 | 1636 | consensus Selective LIM binding factor [Transcript | 98.21 | |
| KOG0376 | 476 | consensus Serine-threonine phosphatase 2A, catalyt | 98.17 | |
| KOG0545 | 329 | consensus Aryl-hydrocarbon receptor-interacting pr | 98.16 | |
| KOG1585 | 308 | consensus Protein required for fusion of vesicles | 98.14 | |
| PF08631 | 278 | SPO22: Meiosis protein SPO22/ZIP4 like; InterPro: | 98.14 | |
| KOG1585 | 308 | consensus Protein required for fusion of vesicles | 98.13 | |
| KOG1550 | 552 | consensus Extracellular protein SEL-1 and related | 98.09 | |
| PF04184 | 539 | ST7: ST7 protein; InterPro: IPR007311 The ST7 (for | 98.09 | |
| PF05843 | 280 | Suf: Suppressor of forked protein (Suf); InterPro: | 98.08 | |
| KOG2300 | 629 | consensus Uncharacterized conserved protein [Funct | 98.04 | |
| KOG2610 | 491 | consensus Uncharacterized conserved protein [Funct | 98.04 | |
| COG3118 | 304 | Thioredoxin domain-containing protein [Posttransla | 98.02 | |
| PF00515 | 34 | TPR_1: Tetratricopeptide repeat; InterPro: IPR0014 | 98.01 | |
| KOG0985 | 1666 | consensus Vesicle coat protein clathrin, heavy cha | 98.0 | |
| PF00515 | 34 | TPR_1: Tetratricopeptide repeat; InterPro: IPR0014 | 97.99 | |
| KOG0545 | 329 | consensus Aryl-hydrocarbon receptor-interacting pr | 97.97 | |
| PF07719 | 34 | TPR_2: Tetratricopeptide repeat; InterPro: IPR0131 | 97.97 | |
| PF07719 | 34 | TPR_2: Tetratricopeptide repeat; InterPro: IPR0131 | 97.95 | |
| KOG4507 | 886 | consensus Uncharacterized conserved protein, conta | 97.94 | |
| PF10300 | 468 | DUF3808: Protein of unknown function (DUF3808); In | 97.91 | |
| PF02259 | 352 | FAT: FAT domain; InterPro: IPR003151 The FAT domai | 97.9 | |
| COG3118 | 304 | Thioredoxin domain-containing protein [Posttransla | 97.89 | |
| KOG0376 | 476 | consensus Serine-threonine phosphatase 2A, catalyt | 97.87 | |
| PF13281 | 374 | DUF4071: Domain of unknown function (DUF4071) | 97.85 | |
| PF13281 | 374 | DUF4071: Domain of unknown function (DUF4071) | 97.84 | |
| KOG2300 | 629 | consensus Uncharacterized conserved protein [Funct | 97.84 | |
| PF10300 | 468 | DUF3808: Protein of unknown function (DUF3808); In | 97.82 | |
| COG2976 | 207 | Uncharacterized protein conserved in bacteria [Fun | 97.8 | |
| KOG0530 | 318 | consensus Protein farnesyltransferase, alpha subun | 97.79 | |
| PF03704 | 146 | BTAD: Bacterial transcriptional activator domain; | 97.74 | |
| PF02259 | 352 | FAT: FAT domain; InterPro: IPR003151 The FAT domai | 97.73 | |
| COG5107 | 660 | RNA14 Pre-mRNA 3'-end processing (cleavage and pol | 97.73 | |
| PF08424 | 321 | NRDE-2: NRDE-2, necessary for RNA interference; In | 97.63 | |
| KOG1308 | 377 | consensus Hsp70-interacting protein Hip/Transient | 97.63 | |
| PF13174 | 33 | TPR_6: Tetratricopeptide repeat; PDB: 3QKY_A 2XEV_ | 97.6 | |
| KOG0551 | 390 | consensus Hsp90 co-chaperone CNS1 (contains TPR re | 97.57 | |
| PF13176 | 36 | TPR_7: Tetratricopeptide repeat; PDB: 3SF4_C 3RO3_ | 97.56 | |
| KOG0551 | 390 | consensus Hsp90 co-chaperone CNS1 (contains TPR re | 97.56 | |
| PF04910 | 360 | Tcf25: Transcriptional repressor TCF25; InterPro: | 97.55 | |
| PF03704 | 146 | BTAD: Bacterial transcriptional activator domain; | 97.54 | |
| PF13181 | 34 | TPR_8: Tetratricopeptide repeat; PDB: 3GW4_B 3MA5_ | 97.54 | |
| COG0790 | 292 | FOG: TPR repeat, SEL1 subfamily [General function | 97.51 | |
| PF10345 | 608 | Cohesin_load: Cohesin loading factor; InterPro: IP | 97.51 | |
| PF13181 | 34 | TPR_8: Tetratricopeptide repeat; PDB: 3GW4_B 3MA5_ | 97.49 | |
| KOG1258 | 577 | consensus mRNA processing protein [RNA processing | 97.48 | |
| PF08424 | 321 | NRDE-2: NRDE-2, necessary for RNA interference; In | 97.44 | |
| COG2909 | 894 | MalT ATP-dependent transcriptional regulator [Tran | 97.44 | |
| PF07079 | 549 | DUF1347: Protein of unknown function (DUF1347); In | 97.43 | |
| PF13176 | 36 | TPR_7: Tetratricopeptide repeat; PDB: 3SF4_C 3RO3_ | 97.41 | |
| KOG0890 | 2382 | consensus Protein kinase of the PI-3 kinase family | 97.4 | |
| PF07079 | 549 | DUF1347: Protein of unknown function (DUF1347); In | 97.37 | |
| PF08631 | 278 | SPO22: Meiosis protein SPO22/ZIP4 like; InterPro: | 97.36 | |
| PF04910 | 360 | Tcf25: Transcriptional repressor TCF25; InterPro: | 97.36 | |
| KOG0530 | 318 | consensus Protein farnesyltransferase, alpha subun | 97.35 | |
| KOG1308 | 377 | consensus Hsp70-interacting protein Hip/Transient | 97.35 | |
| COG0790 | 292 | FOG: TPR repeat, SEL1 subfamily [General function | 97.3 | |
| KOG0890 | 2382 | consensus Protein kinase of the PI-3 kinase family | 97.3 | |
| KOG0985 | 1666 | consensus Vesicle coat protein clathrin, heavy cha | 97.29 | |
| COG2976 | 207 | Uncharacterized protein conserved in bacteria [Fun | 97.27 | |
| KOG1914 | 656 | consensus mRNA cleavage and polyadenylation factor | 97.2 | |
| PF13174 | 33 | TPR_6: Tetratricopeptide repeat; PDB: 3QKY_A 2XEV_ | 97.18 | |
| PF14561 | 90 | TPR_20: Tetratricopeptide repeat; PDB: 3QOU_A 2R5S | 97.1 | |
| KOG3824 | 472 | consensus Huntingtin interacting protein HYPE [Gen | 97.09 | |
| KOG4507 | 886 | consensus Uncharacterized conserved protein, conta | 97.04 | |
| COG4649 | 221 | Uncharacterized protein conserved in bacteria [Fun | 96.98 | |
| PRK10941 | 269 | hypothetical protein; Provisional | 96.96 | |
| PF10345 | 608 | Cohesin_load: Cohesin loading factor; InterPro: IP | 96.94 | |
| KOG1464 | 440 | consensus COP9 signalosome, subunit CSN2 [Posttran | 96.94 | |
| PF14853 | 53 | Fis1_TPR_C: Fis1 C-terminal tetratricopeptide repe | 96.88 | |
| KOG2041 | 1189 | consensus WD40 repeat protein [General function pr | 96.87 | |
| KOG3824 | 472 | consensus Huntingtin interacting protein HYPE [Gen | 96.83 | |
| PF09613 | 160 | HrpB1_HrpK: Bacterial type III secretion protein ( | 96.81 | |
| PF14853 | 53 | Fis1_TPR_C: Fis1 C-terminal tetratricopeptide repe | 96.73 | |
| KOG2041 | 1189 | consensus WD40 repeat protein [General function pr | 96.68 | |
| KOG2396 | 568 | consensus HAT (Half-A-TPR) repeat-containing prote | 96.67 | |
| PF04781 | 111 | DUF627: Protein of unknown function (DUF627); Inte | 96.63 | |
| PF12968 | 144 | DUF3856: Domain of Unknown Function (DUF3856); Int | 96.55 | |
| PF14561 | 90 | TPR_20: Tetratricopeptide repeat; PDB: 3QOU_A 2R5S | 96.53 | |
| smart00028 | 34 | TPR Tetratricopeptide repeats. Repeats present in | 96.51 | |
| PF09613 | 160 | HrpB1_HrpK: Bacterial type III secretion protein ( | 96.48 | |
| KOG1464 | 440 | consensus COP9 signalosome, subunit CSN2 [Posttran | 96.47 | |
| COG2909 | 894 | MalT ATP-dependent transcriptional regulator [Tran | 96.47 | |
| smart00028 | 34 | TPR Tetratricopeptide repeats. Repeats present in | 96.44 | |
| PRK10941 | 269 | hypothetical protein; Provisional | 96.44 | |
| KOG3807 | 556 | consensus Predicted membrane protein ST7 (tumor su | 96.41 | |
| PF09986 | 214 | DUF2225: Uncharacterized protein conserved in bact | 96.4 | |
| COG3914 | 620 | Spy Predicted O-linked N-acetylglucosamine transfe | 96.37 | |
| KOG1258 | 577 | consensus mRNA processing protein [RNA processing | 96.32 | |
| KOG3783 | 546 | consensus Uncharacterized conserved protein [Funct | 96.31 | |
| PF04781 | 111 | DUF627: Protein of unknown function (DUF627); Inte | 96.24 | |
| COG3914 | 620 | Spy Predicted O-linked N-acetylglucosamine transfe | 96.22 | |
| PF09986 | 214 | DUF2225: Uncharacterized protein conserved in bact | 96.15 | |
| KOG2422 | 665 | consensus Uncharacterized conserved protein [Funct | 96.1 | |
| PF13374 | 42 | TPR_10: Tetratricopeptide repeat; PDB: 3CEQ_B 3EDT | 96.05 | |
| PF10602 | 177 | RPN7: 26S proteasome subunit RPN7; InterPro: IPR01 | 96.03 | |
| COG4976 | 287 | Predicted methyltransferase (contains TPR repeat) | 96.01 | |
| COG4649 | 221 | Uncharacterized protein conserved in bacteria [Fun | 95.99 | |
| PRK15180 | 831 | Vi polysaccharide biosynthesis protein TviD; Provi | 95.99 | |
| KOG2396 | 568 | consensus HAT (Half-A-TPR) repeat-containing prote | 95.96 | |
| TIGR02561 | 153 | HrpB1_HrpK type III secretion protein HrpB1/HrpK. | 95.95 | |
| COG4976 | 287 | Predicted methyltransferase (contains TPR repeat) | 95.84 | |
| PF04190 | 260 | DUF410: Protein of unknown function (DUF410) ; Int | 95.77 | |
| COG5107 | 660 | RNA14 Pre-mRNA 3'-end processing (cleavage and pol | 95.71 | |
| COG5191 | 435 | Uncharacterized conserved protein, contains HAT (H | 95.71 | |
| KOG3364 | 149 | consensus Membrane protein involved in organellar | 95.57 | |
| KOG0128 | 881 | consensus RNA-binding protein SART3 (RRM superfami | 95.47 | |
| KOG1538 | 1081 | consensus Uncharacterized conserved protein WDR10, | 95.45 | |
| KOG0529 | 421 | consensus Protein geranylgeranyltransferase type I | 95.44 | |
| PF12968 | 144 | DUF3856: Domain of Unknown Function (DUF3856); Int | 95.4 | |
| TIGR02561 | 153 | HrpB1_HrpK type III secretion protein HrpB1/HrpK. | 95.39 | |
| PF04053 | 443 | Coatomer_WDAD: Coatomer WD associated region ; Int | 95.37 | |
| PF13374 | 42 | TPR_10: Tetratricopeptide repeat; PDB: 3CEQ_B 3EDT | 95.3 | |
| KOG3364 | 149 | consensus Membrane protein involved in organellar | 95.26 | |
| KOG0529 | 421 | consensus Protein geranylgeranyltransferase type I | 95.18 | |
| KOG3807 | 556 | consensus Predicted membrane protein ST7 (tumor su | 95.0 | |
| KOG1839 | 1236 | consensus Uncharacterized protein CLU1/cluA/TIF31 | 94.98 | |
| PF12862 | 94 | Apc5: Anaphase-promoting complex subunit 5 | 94.79 | |
| COG3629 | 280 | DnrI DNA-binding transcriptional activator of the | 94.71 | |
| KOG1310 | 758 | consensus WD40 repeat protein [General function pr | 94.66 | |
| KOG1310 | 758 | consensus WD40 repeat protein [General function pr | 94.61 | |
| PF10602 | 177 | RPN7: 26S proteasome subunit RPN7; InterPro: IPR01 | 94.49 | |
| COG2912 | 269 | Uncharacterized conserved protein [Function unknow | 94.48 | |
| KOG3783 | 546 | consensus Uncharacterized conserved protein [Funct | 94.41 | |
| PF07721 | 26 | TPR_4: Tetratricopeptide repeat; InterPro: IPR0117 | 94.37 | |
| COG5191 | 435 | Uncharacterized conserved protein, contains HAT (H | 94.36 | |
| PF10516 | 38 | SHNi-TPR: SHNi-TPR; InterPro: IPR019544 The tetrat | 94.35 | |
| PF07721 | 26 | TPR_4: Tetratricopeptide repeat; InterPro: IPR0117 | 94.28 | |
| PRK15180 | 831 | Vi polysaccharide biosynthesis protein TviD; Provi | 94.23 | |
| PRK13184 | 932 | pknD serine/threonine-protein kinase; Reviewed | 94.02 | |
| PRK13184 | 932 | pknD serine/threonine-protein kinase; Reviewed | 93.98 | |
| PF10516 | 38 | SHNi-TPR: SHNi-TPR; InterPro: IPR019544 The tetrat | 93.74 | |
| COG3629 | 280 | DnrI DNA-binding transcriptional activator of the | 93.58 | |
| PRK11619 | 644 | lytic murein transglycosylase; Provisional | 93.52 | |
| COG1747 | 711 | Uncharacterized N-terminal domain of the transcrip | 93.47 | |
| PF15015 | 569 | NYD-SP12_N: Spermatogenesis-associated, N-terminal | 93.38 | |
| PF11207 | 203 | DUF2989: Protein of unknown function (DUF2989); In | 93.36 | |
| PF07720 | 36 | TPR_3: Tetratricopeptide repeat; InterPro: IPR0117 | 93.28 | |
| PF07720 | 36 | TPR_3: Tetratricopeptide repeat; InterPro: IPR0117 | 93.27 | |
| PF12862 | 94 | Apc5: Anaphase-promoting complex subunit 5 | 93.23 | |
| KOG1839 | 1236 | consensus Uncharacterized protein CLU1/cluA/TIF31 | 92.98 | |
| PF11207 | 203 | DUF2989: Protein of unknown function (DUF2989); In | 92.9 | |
| COG2912 | 269 | Uncharacterized conserved protein [Function unknow | 92.85 | |
| PF10579 | 80 | Rapsyn_N: Rapsyn N-terminal myristoylation and lin | 92.57 | |
| smart00299 | 140 | CLH Clathrin heavy chain repeat homology. | 92.51 | |
| KOG4814 | 872 | consensus Uncharacterized conserved protein [Funct | 92.39 | |
| COG3947 | 361 | Response regulator containing CheY-like receiver a | 92.09 | |
| PF10579 | 80 | Rapsyn_N: Rapsyn N-terminal myristoylation and lin | 92.05 | |
| PF10373 | 278 | EST1_DNA_bind: Est1 DNA/RNA binding domain; InterP | 91.89 | |
| PRK11619 | 644 | lytic murein transglycosylase; Provisional | 91.39 | |
| PF04053 | 443 | Coatomer_WDAD: Coatomer WD associated region ; Int | 91.38 | |
| PF15015 | 569 | NYD-SP12_N: Spermatogenesis-associated, N-terminal | 90.9 | |
| PF00244 | 236 | 14-3-3: 14-3-3 protein; InterPro: IPR023410 The 14 | 90.59 | |
| COG3947 | 361 | Response regulator containing CheY-like receiver a | 90.22 | |
| KOG2581 | 493 | consensus 26S proteasome regulatory complex, subun | 89.89 | |
| TIGR03504 | 44 | FimV_Cterm FimV C-terminal domain. This protein is | 89.83 | |
| COG5159 | 421 | RPN6 26S proteasome regulatory complex component [ | 89.73 | |
| smart00386 | 33 | HAT HAT (Half-A-TPR) repeats. Present in several R | 89.03 | |
| COG4455 | 273 | ImpE Protein of avirulence locus involved in tempe | 88.87 | |
| PF10373 | 278 | EST1_DNA_bind: Est1 DNA/RNA binding domain; InterP | 88.52 | |
| PF12854 | 34 | PPR_1: PPR repeat | 88.34 | |
| cd02682 | 75 | MIT_AAA_Arch MIT: domain contained within Microtub | 88.3 | |
| smart00386 | 33 | HAT HAT (Half-A-TPR) repeats. Present in several R | 88.09 | |
| PF11817 | 247 | Foie-gras_1: Foie gras liver health family 1; Inte | 87.83 | |
| TIGR03504 | 44 | FimV_Cterm FimV C-terminal domain. This protein is | 87.34 | |
| KOG1463 | 411 | consensus 26S proteasome regulatory complex, subun | 87.23 | |
| COG4455 | 273 | ImpE Protein of avirulence locus involved in tempe | 87.17 | |
| PF12854 | 34 | PPR_1: PPR repeat | 87.11 | |
| KOG2422 | 665 | consensus Uncharacterized conserved protein [Funct | 87.02 | |
| KOG4279 | 1226 | consensus Serine/threonine protein kinase [Signal | 86.91 | |
| KOG0546 | 372 | consensus HSP90 co-chaperone CPR7/Cyclophilin [Pos | 86.16 | |
| KOG0276 | 794 | consensus Vesicle coat complex COPI, beta' subunit | 85.53 | |
| PF10255 | 404 | Paf67: RNA polymerase I-associated factor PAF67; I | 85.16 | |
| KOG2581 | 493 | consensus 26S proteasome regulatory complex, subun | 84.43 | |
| PF10255 | 404 | Paf67: RNA polymerase I-associated factor PAF67; I | 84.35 | |
| PF11817 | 247 | Foie-gras_1: Foie gras liver health family 1; Inte | 83.55 | |
| PF12739 | 414 | TRAPPC-Trs85: ER-Golgi trafficking TRAPP I complex | 83.31 | |
| PF11846 | 193 | DUF3366: Domain of unknown function (DUF3366); Int | 82.55 | |
| KOG0276 | 794 | consensus Vesicle coat complex COPI, beta' subunit | 82.36 | |
| PF13041 | 50 | PPR_2: PPR repeat family | 82.18 | |
| PF09670 | 379 | Cas_Cas02710: CRISPR-associated protein (Cas_Cas02 | 82.0 | |
| KOG1538 | 1081 | consensus Uncharacterized conserved protein WDR10, | 81.49 | |
| PF12753 | 404 | Nro1: Nuclear pore complex subunit Nro1; InterPro: | 81.26 | |
| cd02682 | 75 | MIT_AAA_Arch MIT: domain contained within Microtub | 81.13 | |
| KOG4014 | 248 | consensus Uncharacterized conserved protein (conta | 80.53 | |
| PF04190 | 260 | DUF410: Protein of unknown function (DUF410) ; Int | 80.35 | |
| TIGR00756 | 35 | PPR pentatricopeptide repeat domain (PPR motif). T | 80.34 |
| >KOG4626 consensus O-linked N-acetylglucosamine transferase OGT [Carbohydrate transport and metabolism; Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=100.00 E-value=2e-47 Score=335.10 Aligned_cols=364 Identities=18% Similarity=0.198 Sum_probs=228.8
Q ss_pred hhhhhhhhhhhHHHHHHHHHHHHhcCCCCcchhhhcccchhhhhcChhhHHHHHHHHHHhCCCChhHHHHHHHHHHHhCC
Q 012143 11 EGKKINKLGKCRSRISSKMDSALEFGVDADGDQSGLGTSSSSREEKVSSLKTGLVHVARKMPKNAHAHFLLGLMYQRLGQ 90 (470)
Q Consensus 11 ~~~~~~~~g~~~~a~~~~~~~~l~~~p~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~l~~~~~~~g~ 90 (470)
-|+.+.+.|+...++ ..+..++++.|++..+|.++|.+ +..+|+.+.|..+|..+++++|+...++..+|.++...|+
T Consensus 122 ~aN~~kerg~~~~al-~~y~~aiel~p~fida~inla~a-l~~~~~~~~a~~~~~~alqlnP~l~ca~s~lgnLlka~Gr 199 (966)
T KOG4626|consen 122 LANILKERGQLQDAL-ALYRAAIELKPKFIDAYINLAAA-LVTQGDLELAVQCFFEALQLNPDLYCARSDLGNLLKAEGR 199 (966)
T ss_pred HHHHHHHhchHHHHH-HHHHHHHhcCchhhHHHhhHHHH-HHhcCCCcccHHHHHHHHhcCcchhhhhcchhHHHHhhcc
Confidence 355566666666666 66666667777766667776666 6666666677777766666777666666666766666677
Q ss_pred hhHHHHHHHHHHHHHhhhhcccchhhhHHHHHHhhhccccccccCCCccccccCcccHHHHHHHHHHhhhcCccchHHHH
Q 012143 91 PLKAVSSYEKAEEILLRCEADIARPELLSLVQIHHAQCLLPESSGDNSLDKELEPEELEEILSKLKESMQSDTRQAVVWN 170 (470)
Q Consensus 91 ~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~ 170 (470)
..+|..+|.+|++..|. .+.+|.++|-+ ...+|+...|+..|++++.++|..+++|+
T Consensus 200 l~ea~~cYlkAi~~qp~------------fAiawsnLg~~-----------f~~~Gei~~aiq~y~eAvkldP~f~dAYi 256 (966)
T KOG4626|consen 200 LEEAKACYLKAIETQPC------------FAIAWSNLGCV-----------FNAQGEIWLAIQHYEEAVKLDPNFLDAYI 256 (966)
T ss_pred cchhHHHHHHHHhhCCc------------eeeeehhcchH-----------HhhcchHHHHHHHHHHhhcCCCcchHHHh
Confidence 77777777666665432 11223333333 33445557777777777777777777777
Q ss_pred HHHHHHHHcCChHHHHHHHHHHhhcCCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCChHHHHHHHHHHHhhhcc
Q 012143 171 TLGLILLKSGRLQSSISVLSSLLAVDPNNCDCIGNLGIAYFQSGDMEQSAKCFQDLILKDQNHPAALINYAALLLCKYGS 250 (470)
Q Consensus 171 ~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~l~~~~~~~~~~ 250 (470)
++|.+|...+.+++|+.+|.+++.+.|++..++-++|.+|..+|..+-|+..|++++++.|+.+.++.+++..+.
T Consensus 257 NLGnV~ke~~~~d~Avs~Y~rAl~lrpn~A~a~gNla~iYyeqG~ldlAI~~Ykral~~~P~F~~Ay~NlanALk----- 331 (966)
T KOG4626|consen 257 NLGNVYKEARIFDRAVSCYLRALNLRPNHAVAHGNLACIYYEQGLLDLAIDTYKRALELQPNFPDAYNNLANALK----- 331 (966)
T ss_pred hHHHHHHHHhcchHHHHHHHHHHhcCCcchhhccceEEEEeccccHHHHHHHHHHHHhcCCCchHHHhHHHHHHH-----
Confidence 777777777777777777777777777777777777777777777777777777777777777777777766665
Q ss_pred cccccccchhhhhHHHhcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCChhHHHHHHHHHHhcCCCcccHHHHHH
Q 012143 251 VLAGAGANTGEGACLDQASAVNVAKECLLAALKADPKAAHIWANLANAYYLTGDHRSSGKCLEKAAKLEPNCMSTRYAVA 330 (470)
Q Consensus 251 ~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~p~~~~~~~~l~ 330 (470)
..|+..+|..+|.+++.+.|+.+++..+||.+|..+|.+++|...|.++++..|....++.
T Consensus 332 ----------------d~G~V~ea~~cYnkaL~l~p~hadam~NLgni~~E~~~~e~A~~ly~~al~v~p~~aaa~n--- 392 (966)
T KOG4626|consen 332 ----------------DKGSVTEAVDCYNKALRLCPNHADAMNNLGNIYREQGKIEEATRLYLKALEVFPEFAAAHN--- 392 (966)
T ss_pred ----------------hccchHHHHHHHHHHHHhCCccHHHHHHHHHHHHHhccchHHHHHHHHHHhhChhhhhhhh---
Confidence 4677777777777777777777777777777777777777777777777777776554444
Q ss_pred HHHHHHhhhccCchHHhhhhHHHHHHHhhcCCCCCCCcHHHHHHHHHHHhccccHHHHHHHHHHHhc--chhhhhHhhHH
Q 012143 331 VSRIKDAERSQEPTEQLSWAGNEMASILREGDPVQIEPPIAWAGFAAVQKTHHEVAAAFETEENELS--KMEECAGAGES 408 (470)
Q Consensus 331 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~--~~~~~~~~~l~ 408 (470)
++|.+|..+|++++|+..|+.++. |...+++.++|
T Consensus 393 -------------------------------------------NLa~i~kqqgnl~~Ai~~YkealrI~P~fAda~~NmG 429 (966)
T KOG4626|consen 393 -------------------------------------------NLASIYKQQGNLDDAIMCYKEALRIKPTFADALSNMG 429 (966)
T ss_pred -------------------------------------------hHHHHHHhcccHHHHHHHHHHHHhcCchHHHHHHhcc
Confidence 444455555555555555554322 33344455555
Q ss_pred HHHHHhccHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHcCChHHHHHHHHHHHHhhc
Q 012143 409 AFLDQASAVNVAKECLLAALKADPKAAHIWANLANAYYLTGDHRSSGKCLEKVLMVYC 466 (470)
Q Consensus 409 ~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~ 466 (470)
..|...|+...|+.+|.+|+..+|..++++.+||.+|...|+..+|+..|+.++++-|
T Consensus 430 nt~ke~g~v~~A~q~y~rAI~~nPt~AeAhsNLasi~kDsGni~~AI~sY~~aLklkP 487 (966)
T KOG4626|consen 430 NTYKEMGDVSAAIQCYTRAIQINPTFAEAHSNLASIYKDSGNIPEAIQSYRTALKLKP 487 (966)
T ss_pred hHHHHhhhHHHHHHHHHHHHhcCcHHHHHHhhHHHHhhccCCcHHHHHHHHHHHccCC
Confidence 5555555555555555555555555555555555555555555555555555554443
|
|
| >KOG4626 consensus O-linked N-acetylglucosamine transferase OGT [Carbohydrate transport and metabolism; Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=100.00 E-value=9e-45 Score=318.45 Aligned_cols=349 Identities=19% Similarity=0.221 Sum_probs=224.3
Q ss_pred HHHHHHhcCCCCcchhhhcccchhhhhcChhhHHHHHHHHHHhCCCChhHHHHHHHHHHHhCChhHHHHHHHHHHHHHhh
Q 012143 28 KMDSALEFGVDADGDQSGLGTSSSSREEKVSSLKTGLVHVARKMPKNAHAHFLLGLMYQRLGQPLKAVSSYEKAEEILLR 107 (470)
Q Consensus 28 ~~~~~l~~~p~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~ 107 (470)
.-..+++.+|.-.+++.++|.+ +...|++++|...|+.++++.|++.++|.++|.++..+|+...|..+|..+++++|.
T Consensus 104 ~~~~a~r~~~q~ae~ysn~aN~-~kerg~~~~al~~y~~aiel~p~fida~inla~al~~~~~~~~a~~~~~~alqlnP~ 182 (966)
T KOG4626|consen 104 GSLLAIRKNPQGAEAYSNLANI-LKERGQLQDALALYRAAIELKPKFIDAYINLAAALVTQGDLELAVQCFFEALQLNPD 182 (966)
T ss_pred hhhhhhhccchHHHHHHHHHHH-HHHhchHHHHHHHHHHHHhcCchhhHHHhhHHHHHHhcCCCcccHHHHHHHHhcCcc
Confidence 3344444555555555555555 555555555555555555555555555555555555555555555555555555443
Q ss_pred hhcccchhhhHHHHHHhhhccccccccCCCccccccCcccHHHHHHHHHHhhhcCccchHHHHHHHHHHHHcCChHHHHH
Q 012143 108 CEADIARPELLSLVQIHHAQCLLPESSGDNSLDKELEPEELEEILSKLKESMQSDTRQAVVWNTLGLILLKSGRLQSSIS 187 (470)
Q Consensus 108 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~~~~~~A~~ 187 (470)
.- -+...+|.+ +-..|++.+|..+|.++++..|..+.+|.++|.++..+|+...|+.
T Consensus 183 l~------------ca~s~lgnL-----------lka~Grl~ea~~cYlkAi~~qp~fAiawsnLg~~f~~~Gei~~aiq 239 (966)
T KOG4626|consen 183 LY------------CARSDLGNL-----------LKAEGRLEEAKACYLKAIETQPCFAIAWSNLGCVFNAQGEIWLAIQ 239 (966)
T ss_pred hh------------hhhcchhHH-----------HHhhcccchhHHHHHHHHhhCCceeeeehhcchHHhhcchHHHHHH
Confidence 21 111111111 1223334555555555555555555555555555555555555555
Q ss_pred HHHHHhhcCCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCChHHHHHHHHHHHhhhcccccccccchhhhhHHHh
Q 012143 188 VLSSLLAVDPNNCDCIGNLGIAYFQSGDMEQSAKCFQDLILKDQNHPAALINYAALLLCKYGSVLAGAGANTGEGACLDQ 267 (470)
Q Consensus 188 ~~~~a~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~ 267 (470)
.|+++++++|...++|++||.+|...+.++.|+.+|.+++.+.|++..++-+++.+|. .
T Consensus 240 ~y~eAvkldP~f~dAYiNLGnV~ke~~~~d~Avs~Y~rAl~lrpn~A~a~gNla~iYy---------------------e 298 (966)
T KOG4626|consen 240 HYEEAVKLDPNFLDAYINLGNVYKEARIFDRAVSCYLRALNLRPNHAVAHGNLACIYY---------------------E 298 (966)
T ss_pred HHHHhhcCCCcchHHHhhHHHHHHHHhcchHHHHHHHHHHhcCCcchhhccceEEEEe---------------------c
Confidence 5555555555555555555555555555555555555555555555555544444443 4
Q ss_pred cCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCChhHHHHHHHHHHhcCCCcccHHHHHHHHHHHHhhhccCchHHh
Q 012143 268 ASAVNVAKECLLAALKADPKAAHIWANLANAYYLTGDHRSSGKCLEKAAKLEPNCMSTRYAVAVSRIKDAERSQEPTEQL 347 (470)
Q Consensus 268 ~~~~~~A~~~~~~~~~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~p~~~~~~~~l~~~~~~~~~~~~~~~~~~ 347 (470)
+|..+-|+.+|+++++++|+.++++.++|.++...|+..+|..+|.+++.+.|+
T Consensus 299 qG~ldlAI~~Ykral~~~P~F~~Ay~NlanALkd~G~V~ea~~cYnkaL~l~p~-------------------------- 352 (966)
T KOG4626|consen 299 QGLLDLAIDTYKRALELQPNFPDAYNNLANALKDKGSVTEAVDCYNKALRLCPN-------------------------- 352 (966)
T ss_pred cccHHHHHHHHHHHHhcCCCchHHHhHHHHHHHhccchHHHHHHHHHHHHhCCc--------------------------
Confidence 555555555555555555555555555555555555555555555555555555
Q ss_pred hhhHHHHHHHhhcCCCCCCCcHHHHHHHHHHHhccccHHHHHHHHHHHhc--chhhhhHhhHHHHHHHhccHHHHHHHHH
Q 012143 348 SWAGNEMASILREGDPVQIEPPIAWAGFAAVQKTHHEVAAAFETEENELS--KMEECAGAGESAFLDQASAVNVAKECLL 425 (470)
Q Consensus 348 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~--~~~~~~~~~l~~~~~~~~~~~~A~~~~~ 425 (470)
.+.+..++|.++.++|+++.|...|.+++. |.-..++.++|.+|.+.|++++|+.+|+
T Consensus 353 --------------------hadam~NLgni~~E~~~~e~A~~ly~~al~v~p~~aaa~nNLa~i~kqqgnl~~Ai~~Yk 412 (966)
T KOG4626|consen 353 --------------------HADAMNNLGNIYREQGKIEEATRLYLKALEVFPEFAAAHNNLASIYKQQGNLDDAIMCYK 412 (966)
T ss_pred --------------------cHHHHHHHHHHHHHhccchHHHHHHHHHHhhChhhhhhhhhHHHHHHhcccHHHHHHHHH
Confidence 456788999999999999999999999665 6666889999999999999999999999
Q ss_pred HHHhcCCCcHHHHHHHHHHHHHcCChHHHHHHHHHHHHhhcc
Q 012143 426 AALKADPKAAHIWANLANAYYLTGDHRSSGKCLEKVLMVYCS 467 (470)
Q Consensus 426 ~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~ 467 (470)
.++.+.|..++++.++|.+|..+|+...|+.+|.+|+.+-|.
T Consensus 413 ealrI~P~fAda~~NmGnt~ke~g~v~~A~q~y~rAI~~nPt 454 (966)
T KOG4626|consen 413 EALRIKPTFADALSNMGNTYKEMGDVSAAIQCYTRAIQINPT 454 (966)
T ss_pred HHHhcCchHHHHHHhcchHHHHhhhHHHHHHHHHHHHhcCcH
Confidence 999999999999999999999999999999999999987663
|
|
| >TIGR00990 3a0801s09 mitochondrial precursor proteins import receptor (72 kDa mitochondrial outermembrane protein) (mitochondrial import receptor for the ADP/ATP carrier) (translocase of outermembrane tom70) | Back alignment and domain information |
|---|
Probab=100.00 E-value=8e-38 Score=303.08 Aligned_cols=387 Identities=16% Similarity=0.125 Sum_probs=316.8
Q ss_pred hhhhhhhhhhhhHHHHHHHHHHHHhcCCCCcchhhhcccchhhhhcChhhHHHHHHHHHHhCCCChhHHHHHHHHHHHhC
Q 012143 10 VEGKKINKLGKCRSRISSKMDSALEFGVDADGDQSGLGTSSSSREEKVSSLKTGLVHVARKMPKNAHAHFLLGLMYQRLG 89 (470)
Q Consensus 10 ~~~~~~~~~g~~~~a~~~~~~~~l~~~p~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~l~~~~~~~g 89 (470)
..|..+++.|++.+|+ ..|++++...|+ ...|.++|.+ +...|++++|+..++++++.+|++..+++.+|.+|..+|
T Consensus 132 ~~G~~~~~~~~~~~Ai-~~y~~al~~~p~-~~~~~n~a~~-~~~l~~~~~Ai~~~~~al~l~p~~~~a~~~~a~a~~~lg 208 (615)
T TIGR00990 132 EKGNKAYRNKDFNKAI-KLYSKAIECKPD-PVYYSNRAAC-HNALGDWEKVVEDTTAALELDPDYSKALNRRANAYDGLG 208 (615)
T ss_pred HHHHHHHHcCCHHHHH-HHHHHHHhcCCc-hHHHHHHHHH-HHHhCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHcC
Confidence 3588899999999999 999999999996 6688999999 999999999999999999999999999999999999999
Q ss_pred ChhHHHHHHHHHHHHHhhhhccc-------------------------chhhhHHHHHHhhhcc-------------ccc
Q 012143 90 QPLKAVSSYEKAEEILLRCEADI-------------------------ARPELLSLVQIHHAQC-------------LLP 131 (470)
Q Consensus 90 ~~~~A~~~~~~al~~~~~~~~~~-------------------------~~~~~~~~~~~~~~~~-------------~~~ 131 (470)
++++|+..|..+...++...... ..+....... +.... ...
T Consensus 209 ~~~eA~~~~~~~~~~~~~~~~~~~~~~~~~l~~~a~~~~~~~l~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~ 287 (615)
T TIGR00990 209 KYADALLDLTASCIIDGFRNEQSAQAVERLLKKFAESKAKEILETKPENLPSVTFVGN-YLQSFRPKPRPAGLEDSNELD 287 (615)
T ss_pred CHHHHHHHHHHHHHhCCCccHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCCCHHHHHH-HHHHccCCcchhhhhcccccc
Confidence 99999999877665432211000 0000000000 00000 000
Q ss_pred cccCCCcccc------ccCcccHHHHHHHHHHhhhc---CccchHHHHHHHHHHHHcCChHHHHHHHHHHhhcCCCChHH
Q 012143 132 ESSGDNSLDK------ELEPEELEEILSKLKESMQS---DTRQAVVWNTLGLILLKSGRLQSSISVLSSLLAVDPNNCDC 202 (470)
Q Consensus 132 ~~~~~~~~~~------~~~~~~~~~A~~~~~~~~~~---~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~ 202 (470)
...+...... ....+++++|+..|++++.. .|....++..+|.++..+|++++|+..|+++++++|.+..+
T Consensus 288 ~~~~~~~~~l~~~~~e~~~~~~y~~A~~~~~~al~~~~~~~~~a~a~~~lg~~~~~~g~~~eA~~~~~kal~l~P~~~~~ 367 (615)
T TIGR00990 288 EETGNGQLQLGLKSPESKADESYEEAARAFEKALDLGKLGEKEAIALNLRGTFKCLKGKHLEALADLSKSIELDPRVTQS 367 (615)
T ss_pred cccccchHHHHHHHHHhhhhhhHHHHHHHHHHHHhcCCCChhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCcHHH
Confidence 0011110000 01235789999999999976 47778899999999999999999999999999999999999
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHhhCCCChHHHHHHHHHHHhhhcccccccccchhhhhHHHhcCCHHHHHHHHHHHH
Q 012143 203 IGNLGIAYFQSGDMEQSAKCFQDLILKDQNHPAALINYAALLLCKYGSVLAGAGANTGEGACLDQASAVNVAKECLLAAL 282 (470)
Q Consensus 203 ~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~ 282 (470)
+..+|.++...|++++|+..|+++++.+|+++.++..+|.++. ..|++++|+.+|++++
T Consensus 368 ~~~la~~~~~~g~~~eA~~~~~~al~~~p~~~~~~~~lg~~~~---------------------~~g~~~~A~~~~~kal 426 (615)
T TIGR00990 368 YIKRASMNLELGDPDKAEEDFDKALKLNSEDPDIYYHRAQLHF---------------------IKGEFAQAGKDYQKSI 426 (615)
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHH---------------------HcCCHHHHHHHHHHHH
Confidence 9999999999999999999999999999999999999888887 6999999999999999
Q ss_pred hcCCCCHHHHHHHHHHHHHcCChhHHHHHHHHHHhcCCCcccHHHHHHHHHHHHhhhccCchHHhhhhHHHHHHHhhcCC
Q 012143 283 KADPKAAHIWANLANAYYLTGDHRSSGKCLEKAAKLEPNCMSTRYAVAVSRIKDAERSQEPTEQLSWAGNEMASILREGD 362 (470)
Q Consensus 283 ~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~p~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 362 (470)
.++|++..++..+|.++..+|++++|+..|++++...|+++
T Consensus 427 ~l~P~~~~~~~~la~~~~~~g~~~eA~~~~~~al~~~P~~~--------------------------------------- 467 (615)
T TIGR00990 427 DLDPDFIFSHIQLGVTQYKEGSIASSMATFRRCKKNFPEAP--------------------------------------- 467 (615)
T ss_pred HcCccCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCh---------------------------------------
Confidence 99999999999999999999999999999999999988854
Q ss_pred CCCCCcHHHHHHHHHHHhccccHHHHHHHHHHHhcchhh--h------hHhhHHHHH-HHhccHHHHHHHHHHHHhcCCC
Q 012143 363 PVQIEPPIAWAGFAAVQKTHHEVAAAFETEENELSKMEE--C------AGAGESAFL-DQASAVNVAKECLLAALKADPK 433 (470)
Q Consensus 363 ~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~--~------~~~~l~~~~-~~~~~~~~A~~~~~~al~~~p~ 433 (470)
.++..+|.++...|++++|+..|.+++...+. . .+.+.+..+ ...|++++|+..++++++++|+
T Consensus 468 -------~~~~~lg~~~~~~g~~~~A~~~~~~Al~l~p~~~~~~~~~~~l~~~a~~~~~~~~~~~eA~~~~~kAl~l~p~ 540 (615)
T TIGR00990 468 -------DVYNYYGELLLDQNKFDEAIEKFDTAIELEKETKPMYMNVLPLINKALALFQWKQDFIEAENLCEKALIIDPE 540 (615)
T ss_pred -------HHHHHHHHHHHHccCHHHHHHHHHHHHhcCCccccccccHHHHHHHHHHHHHHhhhHHHHHHHHHHHHhcCCC
Confidence 46677888889999999999999996653221 1 122333333 3469999999999999999999
Q ss_pred cHHHHHHHHHHHHHcCChHHHHHHHHHHHHhhcc
Q 012143 434 AAHIWANLANAYYLTGDHRSSGKCLEKVLMVYCS 467 (470)
Q Consensus 434 ~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~ 467 (470)
+..++..+|.++...|++++|+.+|++++++.++
T Consensus 541 ~~~a~~~la~~~~~~g~~~eAi~~~e~A~~l~~~ 574 (615)
T TIGR00990 541 CDIAVATMAQLLLQQGDVDEALKLFERAAELART 574 (615)
T ss_pred cHHHHHHHHHHHHHccCHHHHHHHHHHHHHHhcc
Confidence 9999999999999999999999999999998764
|
|
| >TIGR02917 PEP_TPR_lipo putative PEP-CTERM system TPR-repeat lipoprotein | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.2e-35 Score=302.37 Aligned_cols=412 Identities=22% Similarity=0.193 Sum_probs=282.8
Q ss_pred hhhhhhhhhhHHHHHHHHHHHHhcCCCCcchhhhcccchhhhhcChhhHHHHHHHHHHhCCCChhHHHHHHHHHHHhCCh
Q 012143 12 GKKINKLGKCRSRISSKMDSALEFGVDADGDQSGLGTSSSSREEKVSSLKTGLVHVARKMPKNAHAHFLLGLMYQRLGQP 91 (470)
Q Consensus 12 ~~~~~~~g~~~~a~~~~~~~~l~~~p~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~l~~~~~~~g~~ 91 (470)
|..+...|++.+|+ ..+.++++.+|++...++.+|.+ +...|++++|...+++++..+|.+..++..++.++...|++
T Consensus 472 ~~~~~~~~~~~~A~-~~~~~a~~~~~~~~~~~~~la~~-~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~ 549 (899)
T TIGR02917 472 GAIYLGKGDLAKAR-EAFEKALSIEPDFFPAAANLARI-DIQEGNPDDAIQRFEKVLTIDPKNLRAILALAGLYLRTGNE 549 (899)
T ss_pred HHHHHhCCCHHHHH-HHHHHHHhhCCCcHHHHHHHHHH-HHHCCCHHHHHHHHHHHHHhCcCcHHHHHHHHHHHHHcCCH
Confidence 33344445555555 55555555555555555555555 55555555555555555555555555555555555555555
Q ss_pred hHHHHHHHHHHHHHhhhhcccchhhhHHHHHHhhhccccccccCCCccccccCcccHHHHHHHHHHhhhcCccchHHHHH
Q 012143 92 LKAVSSYEKAEEILLRCEADIARPELLSLVQIHHAQCLLPESSGDNSLDKELEPEELEEILSKLKESMQSDTRQAVVWNT 171 (470)
Q Consensus 92 ~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~ 171 (470)
++|+..+++++...|.+. ..+..++.+ +...|++++|+..+++++...|.++.++..
T Consensus 550 ~~A~~~~~~~~~~~~~~~------------~~~~~l~~~-----------~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~ 606 (899)
T TIGR02917 550 EEAVAWLEKAAELNPQEI------------EPALALAQY-----------YLGKGQLKKALAILNEAADAAPDSPEAWLM 606 (899)
T ss_pred HHHHHHHHHHHHhCccch------------hHHHHHHHH-----------HHHCCCHHHHHHHHHHHHHcCCCCHHHHHH
Confidence 555555555554433211 011112221 456678899999999999999999999999
Q ss_pred HHHHHHHcCChHHHHHHHHHHhhcCCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCChHHHHHHHHHHHhhhccc
Q 012143 172 LGLILLKSGRLQSSISVLSSLLAVDPNNCDCIGNLGIAYFQSGDMEQSAKCFQDLILKDQNHPAALINYAALLLCKYGSV 251 (470)
Q Consensus 172 l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~l~~~~~~~~~~~ 251 (470)
+|.++...|++++|+..|+++++.+|.++.++..+|.++...|++++|+..|++++..+|++..++..++.++....+..
T Consensus 607 l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~ 686 (899)
T TIGR02917 607 LGRAQLAAGDLNKAVSSFKKLLALQPDSALALLLLADAYAVMKNYAKAITSLKRALELKPDNTEAQIGLAQLLLAAKRTE 686 (899)
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCHH
Confidence 99999999999999999999999999999999999999999999999999999999999999988888888877542221
Q ss_pred cc-------------ccccchhhhhHHHhcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCChhHHHHHHHHHHhc
Q 012143 252 LA-------------GAGANTGEGACLDQASAVNVAKECLLAALKADPKAAHIWANLANAYYLTGDHRSSGKCLEKAAKL 318 (470)
Q Consensus 252 ~~-------------~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~ 318 (470)
.+ ....+..+|.++...|++++|+..|++++...|++ ..+..++.++...|++++|...+++++..
T Consensus 687 ~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~~~~~-~~~~~l~~~~~~~g~~~~A~~~~~~~l~~ 765 (899)
T TIGR02917 687 SAKKIAKSLQKQHPKAALGFELEGDLYLRQKDYPAAIQAYRKALKRAPSS-QNAIKLHRALLASGNTAEAVKTLEAWLKT 765 (899)
T ss_pred HHHHHHHHHHhhCcCChHHHHHHHHHHHHCCCHHHHHHHHHHHHhhCCCc-hHHHHHHHHHHHCCCHHHHHHHHHHHHHh
Confidence 11 23344556777777788888888888887777775 66677777778888888888888888777
Q ss_pred CCCcccHHHHHHHHHHHHhhhccCchHHhhhhHHHHHHHhhcCCCCCCCcHHHHHHHHHHHhccccHHHHHHHHHHHhc-
Q 012143 319 EPNCMSTRYAVAVSRIKDAERSQEPTEQLSWAGNEMASILREGDPVQIEPPIAWAGFAAVQKTHHEVAAAFETEENELS- 397 (470)
Q Consensus 319 ~p~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~- 397 (470)
.|++...+..++...... .. ...+...+...+ ...|.++.++..++.++...|+ .+|+..+.+.+.
T Consensus 766 ~~~~~~~~~~la~~~~~~-----g~---~~~A~~~~~~~~----~~~p~~~~~~~~l~~~~~~~~~-~~A~~~~~~~~~~ 832 (899)
T TIGR02917 766 HPNDAVLRTALAELYLAQ-----KD---YDKAIKHYRTVV----KKAPDNAVVLNNLAWLYLELKD-PRALEYAEKALKL 832 (899)
T ss_pred CCCCHHHHHHHHHHHHHC-----cC---HHHHHHHHHHHH----HhCCCCHHHHHHHHHHHHhcCc-HHHHHHHHHHHhh
Confidence 777776666555433321 11 111222222222 2245567778888888888888 778888877544
Q ss_pred -chhhhhHhhHHHHHHHhccHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHcCChHHHHHHHHHHH
Q 012143 398 -KMEECAGAGESAFLDQASAVNVAKECLLAALKADPKAAHIWANLANAYYLTGDHRSSGKCLEKVL 462 (470)
Q Consensus 398 -~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al 462 (470)
+..+..+..+|.++...|++++|+.+|+++++.+|.++.++..++.++...|++++|++.+++++
T Consensus 833 ~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~ 898 (899)
T TIGR02917 833 APNIPAILDTLGWLLVEKGEADRALPLLRKAVNIAPEAAAIRYHLALALLATGRKAEARKELDKLL 898 (899)
T ss_pred CCCCcHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCChHHHHHHHHHHHHcCCHHHHHHHHHHHh
Confidence 55556677788888888888888888888888888888888888888888888888888888776
|
This protein family occurs in strictly within a subset of Gram-negative bacterial species with the proposed PEP-CTERM/exosortase system, analogous to the LPXTG/sortase system common in Gram-positive bacteria. This protein occurs in a species if and only if a transmembrane histidine kinase (TIGR02916) and a DNA-binding response regulator (TIGR02915) also occur. The present of tetratricopeptide repeats (TPR) suggests protein-protein interaction, possibly for the regulation of PEP-CTERM protein expression, since many PEP-CTERM proteins in these genomes are preceded by a proposed DNA binding site for the response regulator. |
| >TIGR02917 PEP_TPR_lipo putative PEP-CTERM system TPR-repeat lipoprotein | Back alignment and domain information |
|---|
Probab=100.00 E-value=2e-34 Score=296.47 Aligned_cols=434 Identities=19% Similarity=0.162 Sum_probs=296.0
Q ss_pred hhhhhhhhhhhHHHHHHHHHHHHhcCCCCcchhhhcccchhhhhcChhhHHHHHHHHHHhCCCChhHHHHHHHHHHHhCC
Q 012143 11 EGKKINKLGKCRSRISSKMDSALEFGVDADGDQSGLGTSSSSREEKVSSLKTGLVHVARKMPKNAHAHFLLGLMYQRLGQ 90 (470)
Q Consensus 11 ~~~~~~~~g~~~~a~~~~~~~~l~~~p~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~l~~~~~~~g~ 90 (470)
-+..+...|++.+++ ..+.+++..+|.+...+..+|.+ +...|++++|...|+++++.+|+++.++..+|.++...|+
T Consensus 335 la~~~~~~g~~~~A~-~~~~~~~~~~~~~~~~~~~l~~~-~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~ 412 (899)
T TIGR02917 335 LASIQLRLGRVDEAI-ATLSPALGLDPDDPAALSLLGEA-YLALGDFEKAAEYLAKATELDPENAAARTQLGISKLSQGD 412 (899)
T ss_pred HHHHHHHCCCHHHHH-HHHHHHHhcCCCCHHHHHHHHHH-HHHCCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHhCCC
Confidence 456677889999998 88999999999888888899998 8899999999999999999999999999999999999999
Q ss_pred hhHHHHHHHHHHHHHhhhhcccchhhhHHHHHHhh--------------------hccccccccCCCccccccCcccHHH
Q 012143 91 PLKAVSSYEKAEEILLRCEADIARPELLSLVQIHH--------------------AQCLLPESSGDNSLDKELEPEELEE 150 (470)
Q Consensus 91 ~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~--------------------~~~~~~~~~~~~~~~~~~~~~~~~~ 150 (470)
+++|+..|+++++..|...... ...+..+. ....++..+|.. +...|++++
T Consensus 413 ~~~A~~~~~~a~~~~~~~~~~~-----~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~----~~~~~~~~~ 483 (899)
T TIGR02917 413 PSEAIADLETAAQLDPELGRAD-----LLLILSYLRSGQFDKALAAAKKLEKKQPDNASLHNLLGAI----YLGKGDLAK 483 (899)
T ss_pred hHHHHHHHHHHHhhCCcchhhH-----HHHHHHHHhcCCHHHHHHHHHHHHHhCCCCcHHHHHHHHH----HHhCCCHHH
Confidence 9999999999988766532110 00000000 000111111111 455666777
Q ss_pred HHHHHHHhhhcCccchHHHHHHHHHHHHcCChHHHHHHHHHHhhcCCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC
Q 012143 151 ILSKLKESMQSDTRQAVVWNTLGLILLKSGRLQSSISVLSSLLAVDPNNCDCIGNLGIAYFQSGDMEQSAKCFQDLILKD 230 (470)
Q Consensus 151 A~~~~~~~~~~~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~ 230 (470)
|+..|++++..+|+++.++..+|.++...|++++|+..|++++..+|.+..++..++.++...|++++|+..+++++..+
T Consensus 484 A~~~~~~a~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~ 563 (899)
T TIGR02917 484 AREAFEKALSIEPDFFPAAANLARIDIQEGNPDDAIQRFEKVLTIDPKNLRAILALAGLYLRTGNEEEAVAWLEKAAELN 563 (899)
T ss_pred HHHHHHHHHhhCCCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCcCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC
Confidence 77777777777777777777777777777777777777777777777777777777777777777777777777777777
Q ss_pred CCChHHHHHHHHHHHhhhcccc-------------cccccchhhhhHHHhcCCHHHHHHHHHHHHhcCCCCHHHHHHHHH
Q 012143 231 QNHPAALINYAALLLCKYGSVL-------------AGAGANTGEGACLDQASAVNVAKECLLAALKADPKAAHIWANLAN 297 (470)
Q Consensus 231 p~~~~~~~~l~~~~~~~~~~~~-------------~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~la~ 297 (470)
|.+...+..++.++....+... .....+..+|.++...|++++|+.+|+++++..|+++.++..+|.
T Consensus 564 ~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~ 643 (899)
T TIGR02917 564 PQEIEPALALAQYYLGKGQLKKALAILNEAADAAPDSPEAWLMLGRAQLAAGDLNKAVSSFKKLLALQPDSALALLLLAD 643 (899)
T ss_pred ccchhHHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHHHHHH
Confidence 7777777777766654422211 123455667777778888888888888888888887888888888
Q ss_pred HHHHcCChhHHHHHHHHHHhcCCCcccHHHHHHHHHHHHhhhccCchHHhhhhHHHHHHHhhcCCCCCCCcHHHHHHHHH
Q 012143 298 AYYLTGDHRSSGKCLEKAAKLEPNCMSTRYAVAVSRIKDAERSQEPTEQLSWAGNEMASILREGDPVQIEPPIAWAGFAA 377 (470)
Q Consensus 298 ~~~~~g~~~~A~~~~~~a~~~~p~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ 377 (470)
++...|++++|+..|++++...|++...+..++...... .... .+ ...+.......|..+..+..+|.
T Consensus 644 ~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~-----~~~~---~A----~~~~~~~~~~~~~~~~~~~~~~~ 711 (899)
T TIGR02917 644 AYAVMKNYAKAITSLKRALELKPDNTEAQIGLAQLLLAA-----KRTE---SA----KKIAKSLQKQHPKAALGFELEGD 711 (899)
T ss_pred HHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHc-----CCHH---HH----HHHHHHHHhhCcCChHHHHHHHH
Confidence 888888888888888888888887776666554432211 1111 11 11111111223345556666777
Q ss_pred HHhccccHHHHHHHHHHHhcchh-hhhHhhHHHHHHHhccHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHcCChHHHHH
Q 012143 378 VQKTHHEVAAAFETEENELSKME-ECAGAGESAFLDQASAVNVAKECLLAALKADPKAAHIWANLANAYYLTGDHRSSGK 456 (470)
Q Consensus 378 ~~~~~~~~~~A~~~~~~~~~~~~-~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~ 456 (470)
++...|++++|+..+...+...+ ...+..++.++...|++++|+..++++++..|+++.+++.+|.++...|++++|+.
T Consensus 712 ~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~la~~~~~~g~~~~A~~ 791 (899)
T TIGR02917 712 LYLRQKDYPAAIQAYRKALKRAPSSQNAIKLHRALLASGNTAEAVKTLEAWLKTHPNDAVLRTALAELYLAQKDYDKAIK 791 (899)
T ss_pred HHHHCCCHHHHHHHHHHHHhhCCCchHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCcCHHHHHH
Confidence 77777777777777766544221 14455666666666666666666666666666666666666666666666666666
Q ss_pred HHHHHHHhhcc
Q 012143 457 CLEKVLMVYCS 467 (470)
Q Consensus 457 ~~~~al~~~~~ 467 (470)
+|+++++..|+
T Consensus 792 ~~~~~~~~~p~ 802 (899)
T TIGR02917 792 HYRTVVKKAPD 802 (899)
T ss_pred HHHHHHHhCCC
Confidence 66666665543
|
This protein family occurs in strictly within a subset of Gram-negative bacterial species with the proposed PEP-CTERM/exosortase system, analogous to the LPXTG/sortase system common in Gram-positive bacteria. This protein occurs in a species if and only if a transmembrane histidine kinase (TIGR02916) and a DNA-binding response regulator (TIGR02915) also occur. The present of tetratricopeptide repeats (TPR) suggests protein-protein interaction, possibly for the regulation of PEP-CTERM protein expression, since many PEP-CTERM proteins in these genomes are preceded by a proposed DNA binding site for the response regulator. |
| >PRK11447 cellulose synthase subunit BcsC; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.2e-34 Score=295.25 Aligned_cols=447 Identities=14% Similarity=0.098 Sum_probs=330.3
Q ss_pred hhhhhhhhhhhHHHHHHHHHHHHhcCCCCcc-hhhhcccchhhhhcChhhHHHHHHHHHHhCCCChhHHHHHHHHHHHhC
Q 012143 11 EGKKINKLGKCRSRISSKMDSALEFGVDADG-DQSGLGTSSSSREEKVSSLKTGLVHVARKMPKNAHAHFLLGLMYQRLG 89 (470)
Q Consensus 11 ~~~~~~~~g~~~~a~~~~~~~~l~~~p~~~~-~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~l~~~~~~~g 89 (470)
.++.+...|++++|+ ..+.++++.+|++.. .......+ ....|++++|+..|+++++.+|+++.++..+|.++...|
T Consensus 118 ~A~ll~~~g~~~eA~-~~~~~~l~~~p~~~~la~~y~~~~-~~~~g~~~~A~~~L~~ll~~~P~~~~~~~~LA~ll~~~g 195 (1157)
T PRK11447 118 QARLLATTGRTEEAL-ASYDKLFNGAPPELDLAVEYWRLV-AKLPAQRPEAINQLQRLNADYPGNTGLRNTLALLLFSSG 195 (1157)
T ss_pred HHHHHHhCCCHHHHH-HHHHHHccCCCCChHHHHHHHHHH-hhCCccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHccC
Confidence 345567778888887 777787777776643 12222233 334577777888888888878888777788888887778
Q ss_pred ChhHHHHHHHHHHHHHhhh----------------------------------hccc-------------chhhhH--HH
Q 012143 90 QPLKAVSSYEKAEEILLRC----------------------------------EADI-------------ARPELL--SL 120 (470)
Q Consensus 90 ~~~~A~~~~~~al~~~~~~----------------------------------~~~~-------------~~~~~~--~~ 120 (470)
++++|+..+++++...+.. .... ..|... ..
T Consensus 196 ~~~eAl~~l~~~~~~~~~~~~aa~~~~~~l~~~~~~~~~~~~l~~~l~~~p~~~~~~~A~~~L~~~~~~~~dp~~~~~~~ 275 (1157)
T PRK11447 196 RRDEGFAVLEQMAKSPAGRDAAAQLWYGQIKDMPVSDASVAALQKYLQVFSDGDSVAAARSQLAEQQKQLADPAFRARAQ 275 (1157)
T ss_pred CHHHHHHHHHHHhhCCCchHHHHHHHHHHHhccCCChhhHHHHHHHHHHCCCchHHHHHHHHHHHHHHhccCcchHHHHH
Confidence 8887877777765421100 0000 000000 00
Q ss_pred HHHhhh--------------------ccccccccCCCccccccCcccHHHHHHHHHHhhhcCccchH-------------
Q 012143 121 VQIHHA--------------------QCLLPESSGDNSLDKELEPEELEEILSKLKESMQSDTRQAV------------- 167 (470)
Q Consensus 121 ~~~~~~--------------------~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~p~~~~------------- 167 (470)
+..+.. ...++..+|. .+...|++++|+..|+++++.+|++..
T Consensus 276 G~~~~~~g~~~~A~~~l~~aL~~~P~~~~a~~~Lg~----~~~~~g~~~eA~~~l~~Al~~~p~~~~~~~~~~ll~~~~~ 351 (1157)
T PRK11447 276 GLAAVDSGQGGKAIPELQQAVRANPKDSEALGALGQ----AYSQQGDRARAVAQFEKALALDPHSSNRDKWESLLKVNRY 351 (1157)
T ss_pred HHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHH----HHHHcCCHHHHHHHHHHHHHhCCCccchhHHHHHHHhhhH
Confidence 000000 0111112222 266888999999999999999997653
Q ss_pred -HHHHHHHHHHHcCChHHHHHHHHHHhhcCCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCChHHHHHHHHHHHh
Q 012143 168 -VWNTLGLILLKSGRLQSSISVLSSLLAVDPNNCDCIGNLGIAYFQSGDMEQSAKCFQDLILKDQNHPAALINYAALLLC 246 (470)
Q Consensus 168 -~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~l~~~~~~ 246 (470)
....+|.++...|++++|+..|+++++.+|+++.++..+|.++...|++++|++.|+++++.+|++..++..++.++..
T Consensus 352 ~~~~~~g~~~~~~g~~~eA~~~~~~Al~~~P~~~~a~~~Lg~~~~~~g~~~eA~~~y~~aL~~~p~~~~a~~~L~~l~~~ 431 (1157)
T PRK11447 352 WLLIQQGDAALKANNLAQAERLYQQARQVDNTDSYAVLGLGDVAMARKDYAAAERYYQQALRMDPGNTNAVRGLANLYRQ 431 (1157)
T ss_pred HHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHh
Confidence 2235688899999999999999999999999999999999999999999999999999999999999999888887753
Q ss_pred hhcc-ccc--------------------ccccchhhhhHHHhcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCh
Q 012143 247 KYGS-VLA--------------------GAGANTGEGACLDQASAVNVAKECLLAALKADPKAAHIWANLANAYYLTGDH 305 (470)
Q Consensus 247 ~~~~-~~~--------------------~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~la~~~~~~g~~ 305 (470)
.... +.. ....+..+|.++...|++++|+..|+++++.+|+++.+++.+|.++...|++
T Consensus 432 ~~~~~A~~~l~~l~~~~~~~~~~~~~~l~~~~~~~~a~~~~~~g~~~eA~~~~~~Al~~~P~~~~~~~~LA~~~~~~G~~ 511 (1157)
T PRK11447 432 QSPEKALAFIASLSASQRRSIDDIERSLQNDRLAQQAEALENQGKWAQAAELQRQRLALDPGSVWLTYRLAQDLRQAGQR 511 (1157)
T ss_pred cCHHHHHHHHHhCCHHHHHHHHHHHHHhhhhHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCH
Confidence 2100 000 0123345788889999999999999999999999999999999999999999
Q ss_pred hHHHHHHHHHHhcCCCcccHHHHHHHHHHH-----HhhhccCch------HHhhh---------------------hHHH
Q 012143 306 RSSGKCLEKAAKLEPNCMSTRYAVAVSRIK-----DAERSQEPT------EQLSW---------------------AGNE 353 (470)
Q Consensus 306 ~~A~~~~~~a~~~~p~~~~~~~~l~~~~~~-----~~~~~~~~~------~~~~~---------------------~~~~ 353 (470)
++|+..+++++...|+++..++.++..... ++....... ..+.. ...+
T Consensus 512 ~~A~~~l~~al~~~P~~~~~~~a~al~l~~~~~~~~Al~~l~~l~~~~~~~~~~~l~~~l~~~~~l~~a~~l~~~G~~~e 591 (1157)
T PRK11447 512 SQADALMRRLAQQKPNDPEQVYAYGLYLSGSDRDRAALAHLNTLPRAQWNSNIQELAQRLQSDQVLETANRLRDSGKEAE 591 (1157)
T ss_pred HHHHHHHHHHHHcCCCCHHHHHHHHHHHHhCCCHHHHHHHHHhCCchhcChhHHHHHHHHhhhHHHHHHHHHHHCCCHHH
Confidence 999999999999999999888766543211 010000000 00000 0111
Q ss_pred HHHHhhcCCCCCCCcHHHHHHHHHHHhccccHHHHHHHHHHHh--cchhhhhHhhHHHHHHHhccHHHHHHHHHHHHhcC
Q 012143 354 MASILREGDPVQIEPPIAWAGFAAVQKTHHEVAAAFETEENEL--SKMEECAGAGESAFLDQASAVNVAKECLLAALKAD 431 (470)
Q Consensus 354 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~--~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~ 431 (470)
....+. ..|.++..+..+|.++...|++++|+..|++.+ .|.+..+++.++.++...|++++|+..++++++..
T Consensus 592 A~~~l~----~~p~~~~~~~~La~~~~~~g~~~~A~~~y~~al~~~P~~~~a~~~la~~~~~~g~~~eA~~~l~~ll~~~ 667 (1157)
T PRK11447 592 AEALLR----QQPPSTRIDLTLADWAQQRGDYAAARAAYQRVLTREPGNADARLGLIEVDIAQGDLAAARAQLAKLPATA 667 (1157)
T ss_pred HHHHHH----hCCCCchHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHhccC
Confidence 222222 345677788999999999999999999999965 47777889999999999999999999999999999
Q ss_pred CCcHHHHHHHHHHHHHcCChHHHHHHHHHHHHhhcc
Q 012143 432 PKAAHIWANLANAYYLTGDHRSSGKCLEKVLMVYCS 467 (470)
Q Consensus 432 p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~ 467 (470)
|+++.++..+|.++...|++++|+..|+++++..++
T Consensus 668 p~~~~~~~~la~~~~~~g~~~eA~~~~~~al~~~~~ 703 (1157)
T PRK11447 668 NDSLNTQRRVALAWAALGDTAAAQRTFNRLIPQAKS 703 (1157)
T ss_pred CCChHHHHHHHHHHHhCCCHHHHHHHHHHHhhhCcc
Confidence 999999999999999999999999999999987654
|
|
| >PRK11447 cellulose synthase subunit BcsC; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.2e-33 Score=291.05 Aligned_cols=377 Identities=14% Similarity=0.098 Sum_probs=310.7
Q ss_pred hhhhhhhhhhHHHHHHHHHHHHhcCCCCcchhhhcccchhhhhcChhhHHHHHHHHHHhCCCChh--------------H
Q 012143 12 GKKINKLGKCRSRISSKMDSALEFGVDADGDQSGLGTSSSSREEKVSSLKTGLVHVARKMPKNAH--------------A 77 (470)
Q Consensus 12 ~~~~~~~g~~~~a~~~~~~~~l~~~p~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~p~~~~--------------~ 77 (470)
|..+...|++.+|+ ..++++++.+|++..++..+|.+ +...|++++|+..|+++++.+|++.. .
T Consensus 276 G~~~~~~g~~~~A~-~~l~~aL~~~P~~~~a~~~Lg~~-~~~~g~~~eA~~~l~~Al~~~p~~~~~~~~~~ll~~~~~~~ 353 (1157)
T PRK11447 276 GLAAVDSGQGGKAI-PELQQAVRANPKDSEALGALGQA-YSQQGDRARAVAQFEKALALDPHSSNRDKWESLLKVNRYWL 353 (1157)
T ss_pred HHHHHHCCCHHHHH-HHHHHHHHhCCCCHHHHHHHHHH-HHHcCCHHHHHHHHHHHHHhCCCccchhHHHHHHHhhhHHH
Confidence 66678889999999 99999999999999999999999 99999999999999999999998753 1
Q ss_pred HHHHHHHHHHhCChhHHHHHHHHHHHHHhhhhcccchhhhHHHHHHhhhccccccccCCCccccccCcccHHHHHHHHHH
Q 012143 78 HFLLGLMYQRLGQPLKAVSSYEKAEEILLRCEADIARPELLSLVQIHHAQCLLPESSGDNSLDKELEPEELEEILSKLKE 157 (470)
Q Consensus 78 ~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~ 157 (470)
...+|.++...|++++|+..|+++++.+|.+. .++..++.+ +...|++++|+..|++
T Consensus 354 ~~~~g~~~~~~g~~~eA~~~~~~Al~~~P~~~------------~a~~~Lg~~-----------~~~~g~~~eA~~~y~~ 410 (1157)
T PRK11447 354 LIQQGDAALKANNLAQAERLYQQARQVDNTDS------------YAVLGLGDV-----------AMARKDYAAAERYYQQ 410 (1157)
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCH------------HHHHHHHHH-----------HHHCCCHHHHHHHHHH
Confidence 23558889999999999999999999987642 223334443 4566778999999999
Q ss_pred hhhcCccchHHHHHHHH------------------------------------------HHHHcCChHHHHHHHHHHhhc
Q 012143 158 SMQSDTRQAVVWNTLGL------------------------------------------ILLKSGRLQSSISVLSSLLAV 195 (470)
Q Consensus 158 ~~~~~p~~~~~~~~l~~------------------------------------------~~~~~~~~~~A~~~~~~a~~~ 195 (470)
+++.+|++..++..++. ++...|++++|+..|+++++.
T Consensus 411 aL~~~p~~~~a~~~L~~l~~~~~~~~A~~~l~~l~~~~~~~~~~~~~~l~~~~~~~~a~~~~~~g~~~eA~~~~~~Al~~ 490 (1157)
T PRK11447 411 ALRMDPGNTNAVRGLANLYRQQSPEKALAFIASLSASQRRSIDDIERSLQNDRLAQQAEALENQGKWAQAAELQRQRLAL 490 (1157)
T ss_pred HHHhCCCCHHHHHHHHHHHHhcCHHHHHHHHHhCCHHHHHHHHHHHHHhhhhHHHHHHHHHHHCCCHHHHHHHHHHHHHh
Confidence 99999998877655544 445679999999999999999
Q ss_pred CCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCChHHHHHHHHHHHhhhccccc----------------------
Q 012143 196 DPNNCDCIGNLGIAYFQSGDMEQSAKCFQDLILKDQNHPAALINYAALLLCKYGSVLA---------------------- 253 (470)
Q Consensus 196 ~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~l~~~~~~~~~~~~~---------------------- 253 (470)
+|+++.+++.+|.++...|++++|+..+++++..+|+++..++.++..+....+...+
T Consensus 491 ~P~~~~~~~~LA~~~~~~G~~~~A~~~l~~al~~~P~~~~~~~a~al~l~~~~~~~~Al~~l~~l~~~~~~~~~~~l~~~ 570 (1157)
T PRK11447 491 DPGSVWLTYRLAQDLRQAGQRSQADALMRRLAQQKPNDPEQVYAYGLYLSGSDRDRAALAHLNTLPRAQWNSNIQELAQR 570 (1157)
T ss_pred CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHhCCCHHHHHHHHHhCCchhcChhHHHHHHH
Confidence 9999999999999999999999999999999999999999988887665432111100
Q ss_pred -ccccchhhhhHHHhcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCChhHHHHHHHHHHhcCCCcccHHHHHHHH
Q 012143 254 -GAGANTGEGACLDQASAVNVAKECLLAALKADPKAAHIWANLANAYYLTGDHRSSGKCLEKAAKLEPNCMSTRYAVAVS 332 (470)
Q Consensus 254 -~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~p~~~~~~~~l~~~ 332 (470)
.....+..+..+...|++++|+.+++ ..|.++..+..+|.++...|++++|+..|+++++.+|+++
T Consensus 571 l~~~~~l~~a~~l~~~G~~~eA~~~l~----~~p~~~~~~~~La~~~~~~g~~~~A~~~y~~al~~~P~~~--------- 637 (1157)
T PRK11447 571 LQSDQVLETANRLRDSGKEAEAEALLR----QQPPSTRIDLTLADWAQQRGDYAAARAAYQRVLTREPGNA--------- 637 (1157)
T ss_pred HhhhHHHHHHHHHHHCCCHHHHHHHHH----hCCCCchHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCH---------
Confidence 01112345666777788888877765 4677777888888888888888888888888888777754
Q ss_pred HHHHhhhccCchHHhhhhHHHHHHHhhcCCCCCCCcHHHHHHHHHHHhccccHHHHHHHHHHHhc--chhhhhHhhHHHH
Q 012143 333 RIKDAERSQEPTEQLSWAGNEMASILREGDPVQIEPPIAWAGFAAVQKTHHEVAAAFETEENELS--KMEECAGAGESAF 410 (470)
Q Consensus 333 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~--~~~~~~~~~l~~~ 410 (470)
.++..++.++...|++++|+..+...+. +.....+..+|.+
T Consensus 638 -------------------------------------~a~~~la~~~~~~g~~~eA~~~l~~ll~~~p~~~~~~~~la~~ 680 (1157)
T PRK11447 638 -------------------------------------DARLGLIEVDIAQGDLAAARAQLAKLPATANDSLNTQRRVALA 680 (1157)
T ss_pred -------------------------------------HHHHHHHHHHHHCCCHHHHHHHHHHHhccCCCChHHHHHHHHH
Confidence 4677788899999999999999998665 4556778889999
Q ss_pred HHHhccHHHHHHHHHHHHhcCCCcH------HHHHHHHHHHHHcCChHHHHHHHHHHHH
Q 012143 411 LDQASAVNVAKECLLAALKADPKAA------HIWANLANAYYLTGDHRSSGKCLEKVLM 463 (470)
Q Consensus 411 ~~~~~~~~~A~~~~~~al~~~p~~~------~~~~~la~~~~~~g~~~~A~~~~~~al~ 463 (470)
+...|++++|+..|++++...|+++ .++..+|.++...|++++|+..|++++.
T Consensus 681 ~~~~g~~~eA~~~~~~al~~~~~~~~~~~~a~~~~~~a~~~~~~G~~~~A~~~y~~Al~ 739 (1157)
T PRK11447 681 WAALGDTAAAQRTFNRLIPQAKSQPPSMESALVLRDAARFEAQTGQPQQALETYKDAMV 739 (1157)
T ss_pred HHhCCCHHHHHHHHHHHhhhCccCCcchhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHh
Confidence 9999999999999999999876543 4667789999999999999999999985
|
|
| >TIGR00990 3a0801s09 mitochondrial precursor proteins import receptor (72 kDa mitochondrial outermembrane protein) (mitochondrial import receptor for the ADP/ATP carrier) (translocase of outermembrane tom70) | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.2e-32 Score=267.03 Aligned_cols=345 Identities=15% Similarity=0.086 Sum_probs=282.1
Q ss_pred hhhhhhhhhhhhHHHHHHHHHHHHhcCCCCcchhhhcccchhhhhcChhhHHHHHHHHHHhC------------------
Q 012143 10 VEGKKINKLGKCRSRISSKMDSALEFGVDADGDQSGLGTSSSSREEKVSSLKTGLVHVARKM------------------ 71 (470)
Q Consensus 10 ~~~~~~~~~g~~~~a~~~~~~~~l~~~p~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~------------------ 71 (470)
.-|..+.++|++++++ ..+.++++.+|++..+|+.+|.+ +...|++++|+..|..+...+
T Consensus 165 n~a~~~~~l~~~~~Ai-~~~~~al~l~p~~~~a~~~~a~a-~~~lg~~~eA~~~~~~~~~~~~~~~~~~~~~~~~~l~~~ 242 (615)
T TIGR00990 165 NRAACHNALGDWEKVV-EDTTAALELDPDYSKALNRRANA-YDGLGKYADALLDLTASCIIDGFRNEQSAQAVERLLKKF 242 (615)
T ss_pred HHHHHHHHhCCHHHHH-HHHHHHHHcCCCCHHHHHHHHHH-HHHcCCHHHHHHHHHHHHHhCCCccHHHHHHHHHHHHHH
Confidence 3566788999999999 99999999999999999999999 999999999988776554333
Q ss_pred ------------CCChhHHHHHHHHH---------------------------------H---HhCChhHHHHHHHHHHH
Q 012143 72 ------------PKNAHAHFLLGLMY---------------------------------Q---RLGQPLKAVSSYEKAEE 103 (470)
Q Consensus 72 ------------p~~~~~~~~l~~~~---------------------------------~---~~g~~~~A~~~~~~al~ 103 (470)
|.+...+..+|..+ . ..+++++|+..|+++++
T Consensus 243 a~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~e~~~~~~y~~A~~~~~~al~ 322 (615)
T TIGR00990 243 AESKAKEILETKPENLPSVTFVGNYLQSFRPKPRPAGLEDSNELDEETGNGQLQLGLKSPESKADESYEEAARAFEKALD 322 (615)
T ss_pred HHHHHHHHHhcCCCCCCCHHHHHHHHHHccCCcchhhhhcccccccccccchHHHHHHHHHhhhhhhHHHHHHHHHHHHh
Confidence 22222222222211 1 12578899999999987
Q ss_pred HHhhhhcccchhhhHHHHHHhhhccccccccCCCccccccCcccHHHHHHHHHHhhhcCccchHHHHHHHHHHHHcCChH
Q 012143 104 ILLRCEADIARPELLSLVQIHHAQCLLPESSGDNSLDKELEPEELEEILSKLKESMQSDTRQAVVWNTLGLILLKSGRLQ 183 (470)
Q Consensus 104 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~~~~~ 183 (470)
..+. .+ ....++..++.+ +...|++++|+..|++++..+|.++.++..+|.++...|+++
T Consensus 323 ~~~~------~~---~~a~a~~~lg~~-----------~~~~g~~~eA~~~~~kal~l~P~~~~~~~~la~~~~~~g~~~ 382 (615)
T TIGR00990 323 LGKL------GE---KEAIALNLRGTF-----------KCLKGKHLEALADLSKSIELDPRVTQSYIKRASMNLELGDPD 382 (615)
T ss_pred cCCC------Ch---hhHHHHHHHHHH-----------HHHcCCHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHCCCHH
Confidence 6311 01 112334444444 346677899999999999999999999999999999999999
Q ss_pred HHHHHHHHHhhcCCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCChHHHHHHHHHHHhhhcccccccccchhhhh
Q 012143 184 SSISVLSSLLAVDPNNCDCIGNLGIAYFQSGDMEQSAKCFQDLILKDQNHPAALINYAALLLCKYGSVLAGAGANTGEGA 263 (470)
Q Consensus 184 ~A~~~~~~a~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~ 263 (470)
+|+..|+++++.+|+++.++..+|.++...|++++|+..|++++.++|++...+..+|.++.
T Consensus 383 eA~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~kal~l~P~~~~~~~~la~~~~------------------ 444 (615)
T TIGR00990 383 KAEEDFDKALKLNSEDPDIYYHRAQLHFIKGEFAQAGKDYQKSIDLDPDFIFSHIQLGVTQY------------------ 444 (615)
T ss_pred HHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCccCHHHHHHHHHHHH------------------
Confidence 99999999999999999999999999999999999999999999999999999998888887
Q ss_pred HHHhcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCChhHHHHHHHHHHhcCCCcccHHHHHHHHHHHHhhhccCc
Q 012143 264 CLDQASAVNVAKECLLAALKADPKAAHIWANLANAYYLTGDHRSSGKCLEKAAKLEPNCMSTRYAVAVSRIKDAERSQEP 343 (470)
Q Consensus 264 ~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~p~~~~~~~~l~~~~~~~~~~~~~~ 343 (470)
..|++++|+..|++++...|+++.++..+|.++...|++++|+..|++++.+.|+....+.....
T Consensus 445 ---~~g~~~eA~~~~~~al~~~P~~~~~~~~lg~~~~~~g~~~~A~~~~~~Al~l~p~~~~~~~~~~~------------ 509 (615)
T TIGR00990 445 ---KEGSIASSMATFRRCKKNFPEAPDVYNYYGELLLDQNKFDEAIEKFDTAIELEKETKPMYMNVLP------------ 509 (615)
T ss_pred ---HCCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHccCHHHHHHHHHHHHhcCCccccccccHHH------------
Confidence 79999999999999999999999999999999999999999999999999999986543332111
Q ss_pred hHHhhhhHHHHHHHhhcCCCCCCCcHHHHHHHHHHHhccccHHHHHHHHHHHh--cchhhhhHhhHHHHHHHhccHHHHH
Q 012143 344 TEQLSWAGNEMASILREGDPVQIEPPIAWAGFAAVQKTHHEVAAAFETEENEL--SKMEECAGAGESAFLDQASAVNVAK 421 (470)
Q Consensus 344 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~--~~~~~~~~~~l~~~~~~~~~~~~A~ 421 (470)
.+...+..+...|++++|+..+.+.+ +|....++..+|.++.+.|++++|+
T Consensus 510 ---------------------------l~~~a~~~~~~~~~~~eA~~~~~kAl~l~p~~~~a~~~la~~~~~~g~~~eAi 562 (615)
T TIGR00990 510 ---------------------------LINKALALFQWKQDFIEAENLCEKALIIDPECDIAVATMAQLLLQQGDVDEAL 562 (615)
T ss_pred ---------------------------HHHHHHHHHHHhhhHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHccCHHHHH
Confidence 11122223344689999999999854 4555567889999999999999999
Q ss_pred HHHHHHHhcCCCcHH
Q 012143 422 ECLLAALKADPKAAH 436 (470)
Q Consensus 422 ~~~~~al~~~p~~~~ 436 (470)
.+|++++++.+...+
T Consensus 563 ~~~e~A~~l~~~~~e 577 (615)
T TIGR00990 563 KLFERAAELARTEGE 577 (615)
T ss_pred HHHHHHHHHhccHHH
Confidence 999999999887554
|
|
| >PRK15174 Vi polysaccharide export protein VexE; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.3e-32 Score=263.90 Aligned_cols=347 Identities=12% Similarity=0.012 Sum_probs=262.4
Q ss_pred hhhhhhhhHHHHHHHHHHHHhcCCCCcchhhhcccchhhhhcChhhHHHHHHHHHHhCCCChhHHHHHHHHHHHhCChhH
Q 012143 14 KINKLGKCRSRISSKMDSALEFGVDADGDQSGLGTSSSSREEKVSSLKTGLVHVARKMPKNAHAHFLLGLMYQRLGQPLK 93 (470)
Q Consensus 14 ~~~~~g~~~~a~~~~~~~~l~~~p~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~l~~~~~~~g~~~~ 93 (470)
.+...|+..+|. ..+...+...|++..+++.+|.. ....|+++.|...|+++++.+|+++.++..+|.++...|++++
T Consensus 51 ~~~~~g~~~~A~-~l~~~~l~~~p~~~~~l~~l~~~-~l~~g~~~~A~~~l~~~l~~~P~~~~a~~~la~~l~~~g~~~~ 128 (656)
T PRK15174 51 ACLRKDETDVGL-TLLSDRVLTAKNGRDLLRRWVIS-PLASSQPDAVLQVVNKLLAVNVCQPEDVLLVASVLLKSKQYAT 128 (656)
T ss_pred HHHhcCCcchhH-HHhHHHHHhCCCchhHHHHHhhh-HhhcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHcCCHHH
Confidence 355668888887 77888888888888888888877 7788888888888888888888888888888888888888888
Q ss_pred HHHHHHHHHHHHhhhhcccchhhhHHHHHHhhhccccccccCCCccccccCcccHHHHHHHHHHhhhcCccchHHHHHHH
Q 012143 94 AVSSYEKAEEILLRCEADIARPELLSLVQIHHAQCLLPESSGDNSLDKELEPEELEEILSKLKESMQSDTRQAVVWNTLG 173 (470)
Q Consensus 94 A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~l~ 173 (470)
|+..|++++.+.|++. .++..++.+ +...|++++|+..+++++...|+++.++..++
T Consensus 129 Ai~~l~~Al~l~P~~~------------~a~~~la~~-----------l~~~g~~~eA~~~~~~~~~~~P~~~~a~~~~~ 185 (656)
T PRK15174 129 VADLAEQAWLAFSGNS------------QIFALHLRT-----------LVLMDKELQAISLARTQAQEVPPRGDMIATCL 185 (656)
T ss_pred HHHHHHHHHHhCCCcH------------HHHHHHHHH-----------HHHCCChHHHHHHHHHHHHhCCCCHHHHHHHH
Confidence 8888888888766532 122223332 34556668888888888888888777776654
Q ss_pred HHHHHcCChHHHHHHHHHHhhcCCC-ChHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCChHHHHHHHHHHHhhhcccc
Q 012143 174 LILLKSGRLQSSISVLSSLLAVDPN-NCDCIGNLGIAYFQSGDMEQSAKCFQDLILKDQNHPAALINYAALLLCKYGSVL 252 (470)
Q Consensus 174 ~~~~~~~~~~~A~~~~~~a~~~~~~-~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~l~~~~~~~~~~~~ 252 (470)
.+...|++++|+..+++++..+|. .......++.++...|++++|+..+++++..+|+++..+..+|.++.
T Consensus 186 -~l~~~g~~~eA~~~~~~~l~~~~~~~~~~~~~l~~~l~~~g~~~eA~~~~~~al~~~p~~~~~~~~Lg~~l~------- 257 (656)
T PRK15174 186 -SFLNKSRLPEDHDLARALLPFFALERQESAGLAVDTLCAVGKYQEAIQTGESALARGLDGAALRRSLGLAYY------- 257 (656)
T ss_pred -HHHHcCCHHHHHHHHHHHHhcCCCcchhHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHH-------
Confidence 467788888888888888777653 33444556777888888888888888888888888888877777776
Q ss_pred cccccchhhhhHHHhcCCHHH----HHHHHHHHHhcCCCCHHHHHHHHHHHHHcCChhHHHHHHHHHHhcCCCcccHHHH
Q 012143 253 AGAGANTGEGACLDQASAVNV----AKECLLAALKADPKAAHIWANLANAYYLTGDHRSSGKCLEKAAKLEPNCMSTRYA 328 (470)
Q Consensus 253 ~~~~~~~~~~~~~~~~~~~~~----A~~~~~~~~~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~p~~~~~~~~ 328 (470)
..|++++ |+..|+++++.+|+++.++..+|.++...|++++|+..+++++..+|+++
T Consensus 258 --------------~~G~~~eA~~~A~~~~~~Al~l~P~~~~a~~~lg~~l~~~g~~~eA~~~l~~al~l~P~~~----- 318 (656)
T PRK15174 258 --------------QSGRSREAKLQAAEHWRHALQFNSDNVRIVTLYADALIRTGQNEKAIPLLQQSLATHPDLP----- 318 (656)
T ss_pred --------------HcCCchhhHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCH-----
Confidence 5777774 78888888888888888888888888888888888888888888877754
Q ss_pred HHHHHHHHhhhccCchHHhhhhHHHHHHHhhcCCCCCCCcHHHHHHHHHHHhccccHHHHHHHHHHHhc--chhhhhHhh
Q 012143 329 VAVSRIKDAERSQEPTEQLSWAGNEMASILREGDPVQIEPPIAWAGFAAVQKTHHEVAAAFETEENELS--KMEECAGAG 406 (470)
Q Consensus 329 l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~--~~~~~~~~~ 406 (470)
.++..+|.++...|++++|+..+.+.+. |.....+..
T Consensus 319 -----------------------------------------~a~~~La~~l~~~G~~~eA~~~l~~al~~~P~~~~~~~~ 357 (656)
T PRK15174 319 -----------------------------------------YVRAMYARALRQVGQYTAASDEFVQLAREKGVTSKWNRY 357 (656)
T ss_pred -----------------------------------------HHHHHHHHHHHHCCCHHHHHHHHHHHHHhCccchHHHHH
Confidence 3556677788888899999988888664 333344555
Q ss_pred HHHHHHHhccHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHcCChHHHHHHHHHHHHhh
Q 012143 407 ESAFLDQASAVNVAKECLLAALKADPKAAHIWANLANAYYLTGDHRSSGKCLEKVLMVY 465 (470)
Q Consensus 407 l~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~ 465 (470)
+|.++...|++++|+..|+++++.+|++. ...+++|+..|.++++..
T Consensus 358 ~a~al~~~G~~deA~~~l~~al~~~P~~~------------~~~~~ea~~~~~~~~~~~ 404 (656)
T PRK15174 358 AAAALLQAGKTSEAESVFEHYIQARASHL------------PQSFEEGLLALDGQISAV 404 (656)
T ss_pred HHHHHHHCCCHHHHHHHHHHHHHhChhhc------------hhhHHHHHHHHHHHHHhc
Confidence 67888888999999999999999888874 234456666666666655
|
|
| >KOG0547 consensus Translocase of outer mitochondrial membrane complex, subunit TOM70/TOM72 [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.8e-32 Score=231.79 Aligned_cols=361 Identities=15% Similarity=0.092 Sum_probs=279.2
Q ss_pred hhhhhhhhhhhhhHHHHHHHHHHHHhcCCCCcchhhhcccchhhhhcChhhHHHHHHHHHHhCCCChhHHHHHHHHHHHh
Q 012143 9 EVEGKKINKLGKCRSRISSKMDSALEFGVDADGDQSGLGTSSSSREEKVSSLKTGLVHVARKMPKNAHAHFLLGLMYQRL 88 (470)
Q Consensus 9 ~~~~~~~~~~g~~~~a~~~~~~~~l~~~p~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~l~~~~~~~ 88 (470)
.++|+.+++.|++++|| ..|..+|++.|+.+.-|.+++.+ +...|+|++.++...++++++|+...+++.++..+-..
T Consensus 119 K~~GN~~f~~kkY~eAI-kyY~~AI~l~p~epiFYsNraAc-Y~~lgd~~~Vied~TkALEl~P~Y~KAl~RRA~A~E~l 196 (606)
T KOG0547|consen 119 KTKGNKFFRNKKYDEAI-KYYTQAIELCPDEPIFYSNRAAC-YESLGDWEKVIEDCTKALELNPDYVKALLRRASAHEQL 196 (606)
T ss_pred HhhhhhhhhcccHHHHH-HHHHHHHhcCCCCchhhhhHHHH-HHHHhhHHHHHHHHHHHhhcCcHHHHHHHHHHHHHHhh
Confidence 45799999999999999 99999999999998888999999 99999999999999999999999999999999999999
Q ss_pred CChhHHHHHHHH------------------HHHHHh--------hhhcccchhhhHH-----------------------
Q 012143 89 GQPLKAVSSYEK------------------AEEILL--------RCEADIARPELLS----------------------- 119 (470)
Q Consensus 89 g~~~~A~~~~~~------------------al~~~~--------~~~~~~~~~~~~~----------------------- 119 (470)
|++++|+....- .+..-. .....+..|....
T Consensus 197 g~~~eal~D~tv~ci~~~F~n~s~~~~~eR~Lkk~a~~ka~e~~k~nr~p~lPS~~fi~syf~sF~~~~~~~~~~~~~ks 276 (606)
T KOG0547|consen 197 GKFDEALFDVTVLCILEGFQNASIEPMAERVLKKQAMKKAKEKLKENRPPVLPSATFIASYFGSFHADPKPLFDNKSDKS 276 (606)
T ss_pred ccHHHHHHhhhHHHHhhhcccchhHHHHHHHHHHHHHHHHHHhhcccCCCCCCcHHHHHHHHhhccccccccccCCCccc
Confidence 999988754321 111100 0000000000000
Q ss_pred ------HHHHh-----------------------------------hhccccccccCCCccccccCcccHHHHHHHHHHh
Q 012143 120 ------LVQIH-----------------------------------HAQCLLPESSGDNSLDKELEPEELEEILSKLKES 158 (470)
Q Consensus 120 ------~~~~~-----------------------------------~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~ 158 (470)
....+ ..++.++...|-. ++-.|+.-.|...|+.+
T Consensus 277 Da~l~~~l~~l~~~~~e~Y~~a~~~~te~~~~~~~~~~~n~~d~~le~~A~al~~~gtF----~fL~g~~~~a~~d~~~~ 352 (606)
T KOG0547|consen 277 DAALAEALEALEKGLEEGYLKAYDKATEECLGSESSLSVNEIDAELEYMAEALLLRGTF----HFLKGDSLGAQEDFDAA 352 (606)
T ss_pred hhhHHHHHHHHHhhCchhHHHHHHHHHHHhhhhhhhccccccchhHHHHHHHHHHhhhh----hhhcCCchhhhhhHHHH
Confidence 00000 0011222222222 55667788888899999
Q ss_pred hhcCccchHHHHHHHHHHHHcCChHHHHHHHHHHhhcCCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCChHHHH
Q 012143 159 MQSDTRQAVVWNTLGLILLKSGRLQSSISVLSSLLAVDPNNCDCIGNLGIAYFQSGDMEQSAKCFQDLILKDQNHPAALI 238 (470)
Q Consensus 159 ~~~~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~ 238 (470)
+.++|.++..|..+|.+|...++.++-...|.++..++|+++++|+..|++++-++++++|+..|++++.++|++..++.
T Consensus 353 I~l~~~~~~lyI~~a~~y~d~~~~~~~~~~F~~A~~ldp~n~dvYyHRgQm~flL~q~e~A~aDF~Kai~L~pe~~~~~i 432 (606)
T KOG0547|consen 353 IKLDPAFNSLYIKRAAAYADENQSEKMWKDFNKAEDLDPENPDVYYHRGQMRFLLQQYEEAIADFQKAISLDPENAYAYI 432 (606)
T ss_pred HhcCcccchHHHHHHHHHhhhhccHHHHHHHHHHHhcCCCCCchhHhHHHHHHHHHHHHHHHHHHHHHhhcChhhhHHHH
Confidence 99999888888899999999999999999999999999999999999999999999999999999999999999988888
Q ss_pred HHHHHHHhhhcccccccccchhhhhHHHhcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCChhHHHHHHHHHHhc
Q 012143 239 NYAALLLCKYGSVLAGAGANTGEGACLDQASAVNVAKECLLAALKADPKAAHIWANLANAYYLTGDHRSSGKCLEKAAKL 318 (470)
Q Consensus 239 ~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~ 318 (470)
.++.+.+ +.++++++...|+.+++..|+.++++...|.++..++++++|++.|++++.+
T Consensus 433 Ql~~a~Y---------------------r~~k~~~~m~~Fee~kkkFP~~~Evy~~fAeiLtDqqqFd~A~k~YD~ai~L 491 (606)
T KOG0547|consen 433 QLCCALY---------------------RQHKIAESMKTFEEAKKKFPNCPEVYNLFAEILTDQQQFDKAVKQYDKAIEL 491 (606)
T ss_pred HHHHHHH---------------------HHHHHHHHHHHHHHHHHhCCCCchHHHHHHHHHhhHHhHHHHHHHHHHHHhh
Confidence 8888777 6778999999999999999999999999999999999999999999999998
Q ss_pred CCCcccHHHHHHHHHHHHhhhccCchHHhhhhHHHHHHHhhcCCCCCCCcHHHHHHHHHHHhccccHHHHHHHHHHHhcc
Q 012143 319 EPNCMSTRYAVAVSRIKDAERSQEPTEQLSWAGNEMASILREGDPVQIEPPIAWAGFAAVQKTHHEVAAAFETEENELSK 398 (470)
Q Consensus 319 ~p~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~ 398 (470)
.|.....+.+.+ .+...+.+
T Consensus 492 E~~~~~~~v~~~----------------------------------------plV~Ka~l-------------------- 511 (606)
T KOG0547|consen 492 EPREHLIIVNAA----------------------------------------PLVHKALL-------------------- 511 (606)
T ss_pred ccccccccccch----------------------------------------hhhhhhHh--------------------
Confidence 888332222111 01111111
Q ss_pred hhhhhHhhHHHHHHHhccHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHcCChHHHHHHHHHHHHhhcc
Q 012143 399 MEECAGAGESAFLDQASAVNVAKECLLAALKADPKAAHIWANLANAYYLTGDHRSSGKCLEKVLMVYCS 467 (470)
Q Consensus 399 ~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~ 467 (470)
++.-.+++..|+..+.+|++++|.+..++..||.+..++|+.++|+++|++++.+..+
T Consensus 512 -----------~~qwk~d~~~a~~Ll~KA~e~Dpkce~A~~tlaq~~lQ~~~i~eAielFEksa~lArt 569 (606)
T KOG0547|consen 512 -----------VLQWKEDINQAENLLRKAIELDPKCEQAYETLAQFELQRGKIDEAIELFEKSAQLART 569 (606)
T ss_pred -----------hhchhhhHHHHHHHHHHHHccCchHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHh
Confidence 1111367788888899999999988888999999999999999999999988877643
|
|
| >KOG2002 consensus TPR-containing nuclear phosphoprotein that regulates K(+) uptake [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.7e-31 Score=246.96 Aligned_cols=447 Identities=15% Similarity=0.149 Sum_probs=289.8
Q ss_pred hhhhhhhhhhHHHHHHHHHHHHhcCCCCcc-hhhhcccchhhhhcChhhHHHHHHHHHHhCCCChhHHHHHHHHHHHhCC
Q 012143 12 GKKINKLGKCRSRISSKMDSALEFGVDADG-DQSGLGTSSSSREEKVSSLKTGLVHVARKMPKNAHAHFLLGLMYQRLGQ 90 (470)
Q Consensus 12 ~~~~~~~g~~~~a~~~~~~~~l~~~p~~~~-~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~l~~~~~~~g~ 90 (470)
+...+..|+|..++ ..|.+++.++|.... .....|.+ +...+..+.|+..|.++++++|.++.++..||.+-....+
T Consensus 171 A~i~ynkkdY~~al-~yyk~al~inp~~~aD~rIgig~C-f~kl~~~~~a~~a~~ralqLdp~~v~alv~L~~~~l~~~d 248 (1018)
T KOG2002|consen 171 ARIAYNKKDYRGAL-KYYKKALRINPACKADVRIGIGHC-FWKLGMSEKALLAFERALQLDPTCVSALVALGEVDLNFND 248 (1018)
T ss_pred HHHHhccccHHHHH-HHHHHHHhcCcccCCCccchhhhH-HHhccchhhHHHHHHHHHhcChhhHHHHHHHHHHHHHccc
Confidence 33445555555555 555555555554322 33444555 5555555555555555555555555555555555444332
Q ss_pred ---hhHHHHHHHHHHHHHhhhhcccc-----------hhhhHHHH-------HHhhhccccccccCCCccccccCcccHH
Q 012143 91 ---PLKAVSSYEKAEEILLRCEADIA-----------RPELLSLV-------QIHHAQCLLPESSGDNSLDKELEPEELE 149 (470)
Q Consensus 91 ---~~~A~~~~~~al~~~~~~~~~~~-----------~~~~~~~~-------~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 149 (470)
+..++..+.++...+|.++.... .+..+.++ ..-...+..++.+|+. +..+|+|+
T Consensus 249 ~~s~~~~~~ll~~ay~~n~~nP~~l~~LAn~fyfK~dy~~v~~la~~ai~~t~~~~~~aes~Y~~gRs----~Ha~Gd~e 324 (1018)
T KOG2002|consen 249 SDSYKKGVQLLQRAYKENNENPVALNHLANHFYFKKDYERVWHLAEHAIKNTENKSIKAESFYQLGRS----YHAQGDFE 324 (1018)
T ss_pred hHHHHHHHHHHHHHHhhcCCCcHHHHHHHHHHhhcccHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHH----HHhhccHH
Confidence 34455555555554443321110 00000000 0000112223334444 67888999
Q ss_pred HHHHHHHHhhhcCccc-hHHHHHHHHHHHHcCChHHHHHHHHHHhhcCCCChHHHHHHHHHHHHcC----CHHHHHHHHH
Q 012143 150 EILSKLKESMQSDTRQ-AVVWNTLGLILLKSGRLQSSISVLSSLLAVDPNNCDCIGNLGIAYFQSG----DMEQSAKCFQ 224 (470)
Q Consensus 150 ~A~~~~~~~~~~~p~~-~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~la~~~~~~g----~~~~A~~~~~ 224 (470)
+|..+|.+++..+|++ .-.++.+|..++..|+++.|+.+|+++++..|++..+...+|.+|...+ ..+.|..+..
T Consensus 325 kA~~yY~~s~k~~~d~~~l~~~GlgQm~i~~~dle~s~~~fEkv~k~~p~~~etm~iLG~Lya~~~~~~~~~d~a~~~l~ 404 (1018)
T KOG2002|consen 325 KAFKYYMESLKADNDNFVLPLVGLGQMYIKRGDLEESKFCFEKVLKQLPNNYETMKILGCLYAHSAKKQEKRDKASNVLG 404 (1018)
T ss_pred HHHHHHHHHHccCCCCccccccchhHHHHHhchHHHHHHHHHHHHHhCcchHHHHHHHHhHHHhhhhhhHHHHHHHHHHH
Confidence 9999999999999988 7788999999999999999999999999999999999999999998886 6789999999
Q ss_pred HHHhhCCCChHHHHHHHHHHHhhhccc--------c---------cccccchhhhhHHHhcCCHHHHHHHHHHHHhc---
Q 012143 225 DLILKDQNHPAALINYAALLLCKYGSV--------L---------AGAGANTGEGACLDQASAVNVAKECLLAALKA--- 284 (470)
Q Consensus 225 ~~l~~~p~~~~~~~~l~~~~~~~~~~~--------~---------~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~--- 284 (470)
++++..|.+..+|..++.++....... . ..+....++|..++..|++.+|...|.+++..
T Consensus 405 K~~~~~~~d~~a~l~laql~e~~d~~~sL~~~~~A~d~L~~~~~~ip~E~LNNvaslhf~~g~~~~A~~~f~~A~~~~~~ 484 (1018)
T KOG2002|consen 405 KVLEQTPVDSEAWLELAQLLEQTDPWASLDAYGNALDILESKGKQIPPEVLNNVASLHFRLGNIEKALEHFKSALGKLLE 484 (1018)
T ss_pred HHHhcccccHHHHHHHHHHHHhcChHHHHHHHHHHHHHHHHcCCCCCHHHHHhHHHHHHHhcChHHHHHHHHHHhhhhhh
Confidence 999999999999999998887541110 0 13556666888888888888888888888766
Q ss_pred --CCC-----CHHHHHHHHHHHHHcCChhHHHHHHHHHHhcCCCcccHHHHHHH-H-----------HHHHhhhccCchH
Q 012143 285 --DPK-----AAHIWANLANAYYLTGDHRSSGKCLEKAAKLEPNCMSTRYAVAV-S-----------RIKDAERSQEPTE 345 (470)
Q Consensus 285 --~p~-----~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~p~~~~~~~~l~~-~-----------~~~~~~~~~~~~~ 345 (470)
+++ +....+++|.++...++++.|...|+.++...|...+++..++. . .+.+.........
T Consensus 485 ~~n~de~~~~~lt~~YNlarl~E~l~~~~~A~e~Yk~Ilkehp~YId~ylRl~~ma~~k~~~~ea~~~lk~~l~~d~~np 564 (1018)
T KOG2002|consen 485 VANKDEGKSTNLTLKYNLARLLEELHDTEVAEEMYKSILKEHPGYIDAYLRLGCMARDKNNLYEASLLLKDALNIDSSNP 564 (1018)
T ss_pred hcCccccccchhHHHHHHHHHHHhhhhhhHHHHHHHHHHHHCchhHHHHHHhhHHHHhccCcHHHHHHHHHHHhcccCCc
Confidence 122 23357888888888888888888888888888888887776652 1 1112221111111
Q ss_pred HhhhhH--------------HHHHHHhhcCCCCCCCcHHHHHHHHHHHh------------ccccHHHHHHHHHHHhcch
Q 012143 346 QLSWAG--------------NEMASILREGDPVQIEPPIAWAGFAAVQK------------THHEVAAAFETEENELSKM 399 (470)
Q Consensus 346 ~~~~~~--------------~~~~~~~~~~~~~~~~~~~~~~~l~~~~~------------~~~~~~~A~~~~~~~~~~~ 399 (470)
.....+ ..+...+..... ..++.+...+|+++. ..+.+++|++.|.+.+...
T Consensus 565 ~arsl~G~~~l~k~~~~~a~k~f~~i~~~~~~--~~D~YsliaLGN~~~~~l~~~~rn~ek~kk~~~KAlq~y~kvL~~d 642 (1018)
T KOG2002|consen 565 NARSLLGNLHLKKSEWKPAKKKFETILKKTST--KTDAYSLIALGNVYIQALHNPSRNPEKEKKHQEKALQLYGKVLRND 642 (1018)
T ss_pred HHHHHHHHHHHhhhhhcccccHHHHHHhhhcc--CCchhHHHHhhHHHHHHhcccccChHHHHHHHHHHHHHHHHHHhcC
Confidence 111100 011111111111 134556667777653 3345678888888766644
Q ss_pred --hhhhHhhHHHHHHHhccHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHcCChHHHHHHHHHHHHhhc
Q 012143 400 --EECAGAGESAFLDQASAVNVAKECLLAALKADPKAAHIWANLANAYYLTGDHRSSGKCLEKVLMVYC 466 (470)
Q Consensus 400 --~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~ 466 (470)
+..+-.++|.++...|++.+|+..|.++.+.-.+++++|.++|.||..+|+|..|++.|+.+++.+-
T Consensus 643 pkN~yAANGIgiVLA~kg~~~~A~dIFsqVrEa~~~~~dv~lNlah~~~e~~qy~~AIqmYe~~lkkf~ 711 (1018)
T KOG2002|consen 643 PKNMYAANGIGIVLAEKGRFSEARDIFSQVREATSDFEDVWLNLAHCYVEQGQYRLAIQMYENCLKKFY 711 (1018)
T ss_pred cchhhhccchhhhhhhccCchHHHHHHHHHHHHHhhCCceeeeHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 4444568888888888888888888888877777788888888888888888888888888887764
|
|
| >PRK15174 Vi polysaccharide export protein VexE; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.4e-30 Score=249.87 Aligned_cols=324 Identities=14% Similarity=0.039 Sum_probs=281.2
Q ss_pred hhhhhhhhhhhHHHHHHHHHHHHhcCCCCcchhhhcccchhhhhcChhhHHHHHHHHHHhCCCChhHHHHHHHHHHHhCC
Q 012143 11 EGKKINKLGKCRSRISSKMDSALEFGVDADGDQSGLGTSSSSREEKVSSLKTGLVHVARKMPKNAHAHFLLGLMYQRLGQ 90 (470)
Q Consensus 11 ~~~~~~~~g~~~~a~~~~~~~~l~~~p~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~l~~~~~~~g~ 90 (470)
-|......|++++|+ ..++++++.+|++...+..+|.. +...|++++|+..|+++++.+|+++.++..+|.++...|+
T Consensus 82 l~~~~l~~g~~~~A~-~~l~~~l~~~P~~~~a~~~la~~-l~~~g~~~~Ai~~l~~Al~l~P~~~~a~~~la~~l~~~g~ 159 (656)
T PRK15174 82 WVISPLASSQPDAVL-QVVNKLLAVNVCQPEDVLLVASV-LLKSKQYATVADLAEQAWLAFSGNSQIFALHLRTLVLMDK 159 (656)
T ss_pred HhhhHhhcCCHHHHH-HHHHHHHHhCCCChHHHHHHHHH-HHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHCCC
Confidence 345566789999999 99999999999999999999999 9999999999999999999999999999999999999999
Q ss_pred hhHHHHHHHHHHHHHhhhhcccchhhhHHHHHHhhhccccccccCCCccccccCcccHHHHHHHHHHhhhcCc-cchHHH
Q 012143 91 PLKAVSSYEKAEEILLRCEADIARPELLSLVQIHHAQCLLPESSGDNSLDKELEPEELEEILSKLKESMQSDT-RQAVVW 169 (470)
Q Consensus 91 ~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~p-~~~~~~ 169 (470)
+++|+..+++++...|.+.. .. ..... ++..|++++|+..+++++..+| ......
T Consensus 160 ~~eA~~~~~~~~~~~P~~~~------a~------~~~~~------------l~~~g~~~eA~~~~~~~l~~~~~~~~~~~ 215 (656)
T PRK15174 160 ELQAISLARTQAQEVPPRGD------MI------ATCLS------------FLNKSRLPEDHDLARALLPFFALERQESA 215 (656)
T ss_pred hHHHHHHHHHHHHhCCCCHH------HH------HHHHH------------HHHcCCHHHHHHHHHHHHhcCCCcchhHH
Confidence 99999999999988776421 11 11111 3466888999999999999876 334455
Q ss_pred HHHHHHHHHcCChHHHHHHHHHHhhcCCCChHHHHHHHHHHHHcCCHHH----HHHHHHHHHhhCCCChHHHHHHHHHHH
Q 012143 170 NTLGLILLKSGRLQSSISVLSSLLAVDPNNCDCIGNLGIAYFQSGDMEQ----SAKCFQDLILKDQNHPAALINYAALLL 245 (470)
Q Consensus 170 ~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~la~~~~~~g~~~~----A~~~~~~~l~~~p~~~~~~~~l~~~~~ 245 (470)
..++.++...|++++|+..|++++..+|+++.++..+|.++...|++++ |+..|++++..+|++..++..+|.++.
T Consensus 216 ~~l~~~l~~~g~~~eA~~~~~~al~~~p~~~~~~~~Lg~~l~~~G~~~eA~~~A~~~~~~Al~l~P~~~~a~~~lg~~l~ 295 (656)
T PRK15174 216 GLAVDTLCAVGKYQEAIQTGESALARGLDGAALRRSLGLAYYQSGRSREAKLQAAEHWRHALQFNSDNVRIVTLYADALI 295 (656)
T ss_pred HHHHHHHHHCCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCchhhHHHHHHHHHHHHhhCCCCHHHHHHHHHHHH
Confidence 6678899999999999999999999999999999999999999999996 899999999999999999999998888
Q ss_pred hhhcccccccccchhhhhHHHhcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCChhHHHHHHHHHHhcCCCcccH
Q 012143 246 CKYGSVLAGAGANTGEGACLDQASAVNVAKECLLAALKADPKAAHIWANLANAYYLTGDHRSSGKCLEKAAKLEPNCMST 325 (470)
Q Consensus 246 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~p~~~~~ 325 (470)
..|++++|+..+++++..+|+++.++..+|.++...|++++|+..|++++..+|++..
T Consensus 296 ---------------------~~g~~~eA~~~l~~al~l~P~~~~a~~~La~~l~~~G~~~eA~~~l~~al~~~P~~~~- 353 (656)
T PRK15174 296 ---------------------RTGQNEKAIPLLQQSLATHPDLPYVRAMYARALRQVGQYTAASDEFVQLAREKGVTSK- 353 (656)
T ss_pred ---------------------HCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCccchH-
Confidence 7999999999999999999999999999999999999999999999999999987432
Q ss_pred HHHHHHHHHHHhhhccCchHHhhhhHHHHHHHhhcCCCCCCCcHHHHHHHHHHHhccccHHHHHHHHHHHhcchhhhhHh
Q 012143 326 RYAVAVSRIKDAERSQEPTEQLSWAGNEMASILREGDPVQIEPPIAWAGFAAVQKTHHEVAAAFETEENELSKMEECAGA 405 (470)
Q Consensus 326 ~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~ 405 (470)
.+..+|.++...|++++|+..|.+.+...+...
T Consensus 354 ---------------------------------------------~~~~~a~al~~~G~~deA~~~l~~al~~~P~~~-- 386 (656)
T PRK15174 354 ---------------------------------------------WNRYAAAALLQAGKTSEAESVFEHYIQARASHL-- 386 (656)
T ss_pred ---------------------------------------------HHHHHHHHHHHCCCHHHHHHHHHHHHHhChhhc--
Confidence 334457778889999999999999776544432
Q ss_pred hHHHHHHHhccHHHHHHHHHHHHhcCCCcHHH
Q 012143 406 GESAFLDQASAVNVAKECLLAALKADPKAAHI 437 (470)
Q Consensus 406 ~l~~~~~~~~~~~~A~~~~~~al~~~p~~~~~ 437 (470)
...+++|+..+.++++..+....-
T Consensus 387 --------~~~~~ea~~~~~~~~~~~~~~~~~ 410 (656)
T PRK15174 387 --------PQSFEEGLLALDGQISAVNLPPER 410 (656)
T ss_pred --------hhhHHHHHHHHHHHHHhcCCccch
Confidence 345678999999999876655444
|
|
| >PRK10049 pgaA outer membrane protein PgaA; Provisional | Back alignment and domain information |
|---|
Probab=99.98 E-value=4.1e-29 Score=246.57 Aligned_cols=406 Identities=10% Similarity=-0.037 Sum_probs=306.2
Q ss_pred hhhhhhhhHHHHHHHHHHHHhcCCCCcchhhhcccchhhhhcChhhHHHHHHHHHHhCCCChhHHHHHHHHHHHhCChhH
Q 012143 14 KINKLGKCRSRISSKMDSALEFGVDADGDQSGLGTSSSSREEKVSSLKTGLVHVARKMPKNAHAHFLLGLMYQRLGQPLK 93 (470)
Q Consensus 14 ~~~~~g~~~~a~~~~~~~~l~~~p~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~l~~~~~~~g~~~~ 93 (470)
...-.|+..+++ ..+.+++..+|....++..+|.. +...|++++|...++++++.+|.++.++..+|.++...|++++
T Consensus 24 ia~~~g~~~~A~-~~~~~~~~~~~~~a~~~~~lA~~-~~~~g~~~~A~~~~~~al~~~P~~~~a~~~la~~l~~~g~~~e 101 (765)
T PRK10049 24 IALWAGQDAEVI-TVYNRYRVHMQLPARGYAAVAVA-YRNLKQWQNSLTLWQKALSLEPQNDDYQRGLILTLADAGQYDE 101 (765)
T ss_pred HHHHcCCHHHHH-HHHHHHHhhCCCCHHHHHHHHHH-HHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHH
Confidence 345678899998 88888888888888889999999 9999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHhhhhcccchhhhHHHHHHhhhccccccccCCCccccccCcccHHHHHHHHHHhhhcCccchHHHHHHH
Q 012143 94 AVSSYEKAEEILLRCEADIARPELLSLVQIHHAQCLLPESSGDNSLDKELEPEELEEILSKLKESMQSDTRQAVVWNTLG 173 (470)
Q Consensus 94 A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~l~ 173 (470)
|+..++++++..|++. . +..++.+ +...|++++|+..+++++...|+++.++..++
T Consensus 102 A~~~l~~~l~~~P~~~------~-------~~~la~~-----------l~~~g~~~~Al~~l~~al~~~P~~~~~~~~la 157 (765)
T PRK10049 102 ALVKAKQLVSGAPDKA------N-------LLALAYV-----------YKRAGRHWDELRAMTQALPRAPQTQQYPTEYV 157 (765)
T ss_pred HHHHHHHHHHhCCCCH------H-------HHHHHHH-----------HHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHH
Confidence 9999999999877642 1 2233333 34567779999999999999999999999999
Q ss_pred HHHHHcCChHHHHHHHHHHhhcCCCChH-----HHHHHHHHHH-----HcCCH---HHHHHHHHHHHhhCCCChHHHHHH
Q 012143 174 LILLKSGRLQSSISVLSSLLAVDPNNCD-----CIGNLGIAYF-----QSGDM---EQSAKCFQDLILKDQNHPAALINY 240 (470)
Q Consensus 174 ~~~~~~~~~~~A~~~~~~a~~~~~~~~~-----~~~~la~~~~-----~~g~~---~~A~~~~~~~l~~~p~~~~~~~~l 240 (470)
.++...|..++|+..++++.. .|.... ....+..+.. ..+++ ++|++.++++++..|.++.....+
T Consensus 158 ~~l~~~~~~e~Al~~l~~~~~-~p~~~~~l~~~~~~~~~r~~~~~~~~~~~r~~~ad~Al~~~~~ll~~~~~~p~~~~~~ 236 (765)
T PRK10049 158 QALRNNRLSAPALGAIDDANL-TPAEKRDLEADAAAELVRLSFMPTRSEKERYAIADRALAQYDALEALWHDNPDATADY 236 (765)
T ss_pred HHHHHCCChHHHHHHHHhCCC-CHHHHHHHHHHHHHHHHHhhcccccChhHHHHHHHHHHHHHHHHHhhcccCCccchHH
Confidence 999999999999999988776 554311 2222222222 22334 789999999997755554432221
Q ss_pred HHHHHhhhcccccccccchhhhhHHHhcCCHHHHHHHHHHHHhcCCCCH-HHHHHHHHHHHHcCChhHHHHHHHHHHhcC
Q 012143 241 AALLLCKYGSVLAGAGANTGEGACLDQASAVNVAKECLLAALKADPKAA-HIWANLANAYYLTGDHRSSGKCLEKAAKLE 319 (470)
Q Consensus 241 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~p~~~-~~~~~la~~~~~~g~~~~A~~~~~~a~~~~ 319 (470)
....... ++.+ ...|++++|+..|+++++..|..+ .+...+|.++...|++++|+..|+++++.+
T Consensus 237 ~~a~~d~-------------l~~L-l~~g~~~eA~~~~~~ll~~~~~~P~~a~~~la~~yl~~g~~e~A~~~l~~~l~~~ 302 (765)
T PRK10049 237 QRARIDR-------------LGAL-LARDRYKDVISEYQRLKAEGQIIPPWAQRWVASAYLKLHQPEKAQSILTELFYHP 302 (765)
T ss_pred HHHHHHH-------------HHHH-HHhhhHHHHHHHHHHhhccCCCCCHHHHHHHHHHHHhcCCcHHHHHHHHHHhhcC
Confidence 1111100 1111 257999999999999998864422 244446999999999999999999999988
Q ss_pred CCccc----HHHHHHHHHHHHhhhccCchHHhhhhHHHHHHHhhcC---------CCCCCCc--HHHHHHHHHHHhcccc
Q 012143 320 PNCMS----TRYAVAVSRIKDAERSQEPTEQLSWAGNEMASILREG---------DPVQIEP--PIAWAGFAAVQKTHHE 384 (470)
Q Consensus 320 p~~~~----~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---------~~~~~~~--~~~~~~l~~~~~~~~~ 384 (470)
|.+.. ....+....+ .. ..+..+...+....... ....|++ ..++..++.++...|+
T Consensus 303 p~~~~~~~~~~~~L~~a~~-----~~---g~~~eA~~~l~~~~~~~P~~~~~~~~~~~~p~~~~~~a~~~~a~~l~~~g~ 374 (765)
T PRK10049 303 ETIADLSDEELADLFYSLL-----ES---ENYPGALTVTAHTINNSPPFLRLYGSPTSIPNDDWLQGQSLLSQVAKYSND 374 (765)
T ss_pred CCCCCCChHHHHHHHHHHH-----hc---ccHHHHHHHHHHHhhcCCceEeecCCCCCCCCchHHHHHHHHHHHHHHcCC
Confidence 87622 2222222111 11 11222222222222221 1112232 4577889999999999
Q ss_pred HHHHHHHHHHHhc--chhhhhHhhHHHHHHHhccHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHcCChHHHHHHHHHHH
Q 012143 385 VAAAFETEENELS--KMEECAGAGESAFLDQASAVNVAKECLLAALKADPKAAHIWANLANAYYLTGDHRSSGKCLEKVL 462 (470)
Q Consensus 385 ~~~A~~~~~~~~~--~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al 462 (470)
+++|+..+.+.+. |.....+..+|.++...|++++|+..++++++++|+++.+++.+|.++...|++++|...+++++
T Consensus 375 ~~eA~~~l~~al~~~P~n~~l~~~lA~l~~~~g~~~~A~~~l~~al~l~Pd~~~l~~~~a~~al~~~~~~~A~~~~~~ll 454 (765)
T PRK10049 375 LPQAEMRARELAYNAPGNQGLRIDYASVLQARGWPRAAENELKKAEVLEPRNINLEVEQAWTALDLQEWRQMDVLTDDVV 454 (765)
T ss_pred HHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCChHHHHHHHHHHHHhCCHHHHHHHHHHHH
Confidence 9999999999554 77778899999999999999999999999999999999999999999999999999999999999
Q ss_pred HhhccC
Q 012143 463 MVYCSS 468 (470)
Q Consensus 463 ~~~~~~ 468 (470)
+..|.+
T Consensus 455 ~~~Pd~ 460 (765)
T PRK10049 455 AREPQD 460 (765)
T ss_pred HhCCCC
Confidence 998865
|
|
| >KOG2002 consensus TPR-containing nuclear phosphoprotein that regulates K(+) uptake [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.97 E-value=3.7e-28 Score=225.03 Aligned_cols=395 Identities=15% Similarity=0.159 Sum_probs=324.7
Q ss_pred HHHHHHHHHHHHhcCCCCcchhhhcccchhhhhcChhhHHHHHHHHHHhCCCC-hhHHHHHHHHHHHhCChhHHHHHHHH
Q 012143 22 RSRISSKMDSALEFGVDADGDQSGLGTSSSSREEKVSSLKTGLVHVARKMPKN-AHAHFLLGLMYQRLGQPLKAVSSYEK 100 (470)
Q Consensus 22 ~~a~~~~~~~~l~~~p~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~p~~-~~~~~~l~~~~~~~g~~~~A~~~~~~ 100 (470)
+.+. ..|..++...|++...++..+.+ .+..++|..|..+|++++..+|.. ++....+|.|+.+.|+.+.|+..|.+
T Consensus 147 ~~A~-a~F~~Vl~~sp~Nil~LlGkA~i-~ynkkdY~~al~yyk~al~inp~~~aD~rIgig~Cf~kl~~~~~a~~a~~r 224 (1018)
T KOG2002|consen 147 DDAD-AQFHFVLKQSPDNILALLGKARI-AYNKKDYRGALKYYKKALRINPACKADVRIGIGHCFWKLGMSEKALLAFER 224 (1018)
T ss_pred HHHH-HHHHHHHhhCCcchHHHHHHHHH-HhccccHHHHHHHHHHHHhcCcccCCCccchhhhHHHhccchhhHHHHHHH
Confidence 6676 78999999999999999999999 999999999999999999999975 57888999999999999999999999
Q ss_pred HHHHHhhhhcccchhhhHHHHHHhhhccccccccCCCccccccCcccHHHHHHHHHHhhhcCccchHHHHHHHHHHHHcC
Q 012143 101 AEEILLRCEADIARPELLSLVQIHHAQCLLPESSGDNSLDKELEPEELEEILSKLKESMQSDTRQAVVWNTLGLILLKSG 180 (470)
Q Consensus 101 al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~~ 180 (470)
+++++|..- .+..+++.+-.. ......+..++..+.++...+|.+|.++..++.-++..|
T Consensus 225 alqLdp~~v------------~alv~L~~~~l~--------~~d~~s~~~~~~ll~~ay~~n~~nP~~l~~LAn~fyfK~ 284 (1018)
T KOG2002|consen 225 ALQLDPTCV------------SALVALGEVDLN--------FNDSDSYKKGVQLLQRAYKENNENPVALNHLANHFYFKK 284 (1018)
T ss_pred HHhcChhhH------------HHHHHHHHHHHH--------ccchHHHHHHHHHHHHHHhhcCCCcHHHHHHHHHHhhcc
Confidence 999987542 222222222111 123356789999999999999999999999999999999
Q ss_pred ChHHHHHHHHHHhhcCC---CChHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCC-hHHHHHHHHHHHhhhcccccccc
Q 012143 181 RLQSSISVLSSLLAVDP---NNCDCIGNLGIAYFQSGDMEQSAKCFQDLILKDQNH-PAALINYAALLLCKYGSVLAGAG 256 (470)
Q Consensus 181 ~~~~A~~~~~~a~~~~~---~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~-~~~~~~l~~~~~~~~~~~~~~~~ 256 (470)
+|..+......++.... .-.+.++.+|.+|..+|++++|..+|.+++..+|++ .-.++.+|..++
T Consensus 285 dy~~v~~la~~ai~~t~~~~~~aes~Y~~gRs~Ha~Gd~ekA~~yY~~s~k~~~d~~~l~~~GlgQm~i----------- 353 (1018)
T KOG2002|consen 285 DYERVWHLAEHAIKNTENKSIKAESFYQLGRSYHAQGDFEKAFKYYMESLKADNDNFVLPLVGLGQMYI----------- 353 (1018)
T ss_pred cHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHhhccHHHHHHHHHHHHccCCCCccccccchhHHHH-----------
Confidence 99999999999988653 335679999999999999999999999999999988 555666666666
Q ss_pred cchhhhhHHHhcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcC----ChhHHHHHHHHHHhcCCCcccHHHHHHHH
Q 012143 257 ANTGEGACLDQASAVNVAKECLLAALKADPKAAHIWANLANAYYLTG----DHRSSGKCLEKAAKLEPNCMSTRYAVAVS 332 (470)
Q Consensus 257 ~~~~~~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~la~~~~~~g----~~~~A~~~~~~a~~~~p~~~~~~~~l~~~ 332 (470)
..|+++.|+.+|+++++..|++..+...+|.+|...+ ..+.|..+..+++...|.+..+|..++..
T Consensus 354 ----------~~~dle~s~~~fEkv~k~~p~~~etm~iLG~Lya~~~~~~~~~d~a~~~l~K~~~~~~~d~~a~l~laql 423 (1018)
T KOG2002|consen 354 ----------KRGDLEESKFCFEKVLKQLPNNYETMKILGCLYAHSAKKQEKRDKASNVLGKVLEQTPVDSEAWLELAQL 423 (1018)
T ss_pred ----------HhchHHHHHHHHHHHHHhCcchHHHHHHHHhHHHhhhhhhHHHHHHHHHHHHHHhcccccHHHHHHHHHH
Confidence 8999999999999999999999999999999998886 67899999999999999999999887764
Q ss_pred HHHHhhhccCchHHhhhhHHHHHHHhhcCCCCCCCcHHHHHHHHHHHhccccHHHHHHHHHHHhcc----hhh-------
Q 012143 333 RIKDAERSQEPTEQLSWAGNEMASILREGDPVQIEPPIAWAGFAAVQKTHHEVAAAFETEENELSK----MEE------- 401 (470)
Q Consensus 333 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~----~~~------- 401 (470)
.... ........+..+...+.. .... -.+.+..++|..++..|.+.+|...+..++.. .+.
T Consensus 424 ~e~~--d~~~sL~~~~~A~d~L~~---~~~~---ip~E~LNNvaslhf~~g~~~~A~~~f~~A~~~~~~~~n~de~~~~~ 495 (1018)
T KOG2002|consen 424 LEQT--DPWASLDAYGNALDILES---KGKQ---IPPEVLNNVASLHFRLGNIEKALEHFKSALGKLLEVANKDEGKSTN 495 (1018)
T ss_pred HHhc--ChHHHHHHHHHHHHHHHH---cCCC---CCHHHHHhHHHHHHHhcChHHHHHHHHHHhhhhhhhcCccccccch
Confidence 3321 111112222222222222 2222 23678999999999999999999999986553 111
Q ss_pred -hhHhhHHHHHHHhccHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHcCChHHHHHHHHHHHHhhcc
Q 012143 402 -CAGAGESAFLDQASAVNVAKECLLAALKADPKAAHIWANLANAYYLTGDHRSSGKCLEKVLMVYCS 467 (470)
Q Consensus 402 -~~~~~l~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~ 467 (470)
...|++|.++...++++.|.+.|..++..+|...+++..+|......++..+|...++.++.+-.+
T Consensus 496 lt~~YNlarl~E~l~~~~~A~e~Yk~Ilkehp~YId~ylRl~~ma~~k~~~~ea~~~lk~~l~~d~~ 562 (1018)
T KOG2002|consen 496 LTLKYNLARLLEELHDTEVAEEMYKSILKEHPGYIDAYLRLGCMARDKNNLYEASLLLKDALNIDSS 562 (1018)
T ss_pred hHHHHHHHHHHHhhhhhhHHHHHHHHHHHHCchhHHHHHHhhHHHHhccCcHHHHHHHHHHHhcccC
Confidence 247899999999999999999999999999999999999998888899999999999999987654
|
|
| >PRK09782 bacteriophage N4 receptor, outer membrane subunit; Provisional | Back alignment and domain information |
|---|
Probab=99.97 E-value=7.6e-28 Score=237.54 Aligned_cols=444 Identities=15% Similarity=0.038 Sum_probs=317.1
Q ss_pred hhhhhhhhhhhHHHHHHHHHHHHhcCCCCcchhhhcccchhhhhcChhhHHHHHHHHHHhCCCChhHHHHHHHHHHHhCC
Q 012143 11 EGKKINKLGKCRSRISSKMDSALEFGVDADGDQSGLGTSSSSREEKVSSLKTGLVHVARKMPKNAHAHFLLGLMYQRLGQ 90 (470)
Q Consensus 11 ~~~~~~~~g~~~~a~~~~~~~~l~~~p~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~l~~~~~~~g~ 90 (470)
+|..+...|++.+|+ ..|+++++++|++...++.++.. +...|++++|+..++++++.+|.|...+..++.+ ++
T Consensus 50 ~a~~~~~~Gd~~~A~-~~l~~Al~~dP~n~~~~~~LA~~-yl~~g~~~~A~~~~~kAv~ldP~n~~~~~~La~i----~~ 123 (987)
T PRK09782 50 KALKAQKNNDEATAI-REFEYIHQQVPDNIPLTLYLAEA-YRHFGHDDRARLLLEDQLKRHPGDARLERSLAAI----PV 123 (987)
T ss_pred HHHHHHhCCCHHHHH-HHHHHHHHhCCCCHHHHHHHHHH-HHHCCCHHHHHHHHHHHHhcCcccHHHHHHHHHh----cc
Confidence 566677779999999 99999999999999999999999 9999999999999999999999999998888777 99
Q ss_pred hhHHHHHHHHHHHHHhhhhcccchhhhH-------HHH---HHhhhc-cccccccCCC------ccccccCcccHHHHHH
Q 012143 91 PLKAVSSYEKAEEILLRCEADIARPELL-------SLV---QIHHAQ-CLLPESSGDN------SLDKELEPEELEEILS 153 (470)
Q Consensus 91 ~~~A~~~~~~al~~~~~~~~~~~~~~~~-------~~~---~~~~~~-~~~~~~~~~~------~~~~~~~~~~~~~A~~ 153 (470)
+++|+..|++++..+|++......-... +.. .+...+ -......+.. ....+...|++++|+.
T Consensus 124 ~~kA~~~ye~l~~~~P~n~~~~~~la~~~~~~~~l~y~q~eqAl~AL~lr~~~~~~~~~vL~L~~~rlY~~l~dw~~Ai~ 203 (987)
T PRK09782 124 EVKSVTTVEELLAQQKACDAVPTLRCRSEVGQNALRLAQLPVARAQLNDATFAASPEGKTLRTDLLQRAIYLKQWSQADT 203 (987)
T ss_pred ChhHHHHHHHHHHhCCCChhHHHHHHHHhhccchhhhhhHHHHHHHHHHhhhCCCCCcHHHHHHHHHHHHHHhCHHHHHH
Confidence 9999999999999998865432111110 000 000000 0001111110 1334677899999999
Q ss_pred HHHHhhhcCccchHHHHHHHHHHHH-cCChHHHHHHHHHHhhcCCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHhh---
Q 012143 154 KLKESMQSDTRQAVVWNTLGLILLK-SGRLQSSISVLSSLLAVDPNNCDCIGNLGIAYFQSGDMEQSAKCFQDLILK--- 229 (470)
Q Consensus 154 ~~~~~~~~~p~~~~~~~~l~~~~~~-~~~~~~A~~~~~~a~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~--- 229 (470)
.+.++++..|.+...+..++.+|.. +++ +++..+++..++ .++.++..++..|...|+.++|...+++.-..
T Consensus 204 lL~~L~k~~pl~~~~~~~L~~ay~q~l~~-~~a~al~~~~lk---~d~~l~~ala~~yi~~G~~~~A~~~L~~~~~~~~~ 279 (987)
T PRK09782 204 LYNEARQQNTLSAAERRQWFDVLLAGQLD-DRLLALQSQGIF---TDPQSRITYATALAYRGEKARLQHYLIENKPLFTT 279 (987)
T ss_pred HHHHHHhcCCCCHHHHHHHHHHHHHhhCH-HHHHHHhchhcc---cCHHHHHHHHHHHHHCCCHHHHHHHHHhCcccccC
Confidence 9999999999999989999998888 477 888888665333 77889999999999999999999887764322
Q ss_pred CCCChHHHHHHHHHHHh---------------------------------------------------------------
Q 012143 230 DQNHPAALINYAALLLC--------------------------------------------------------------- 246 (470)
Q Consensus 230 ~p~~~~~~~~l~~~~~~--------------------------------------------------------------- 246 (470)
+|.+...++.++.....
T Consensus 280 ~~~~~~~~~~l~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~ 359 (987)
T PRK09782 280 DAQEKSWLYLLSKYSANPVQALANYTVQFADNRQYVVGATLPVLLKEGQYDAAQKLLATLPANEMLEERYAVSVATRNKA 359 (987)
T ss_pred CCccHHHHHHHHhccCchhhhccchhhhhHHHHHHHHHHHHHHHHhccHHHHHHHHhcCCCcchHHHHHHhhccccCchh
Confidence 12222222222211111
Q ss_pred ------------------------------------------------------------------hhc---c--c--c-
Q 012143 247 ------------------------------------------------------------------KYG---S--V--L- 252 (470)
Q Consensus 247 ------------------------------------------------------------------~~~---~--~--~- 252 (470)
... . . +
T Consensus 360 ~~~~~~~~~y~~~~~~~~~l~q~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~l~ 439 (987)
T PRK09782 360 EALRLARLLYQQEPANLTRLDQLTWQLMQNGQSREAADLLLQRYPFQGDARLSQTLMARLASLLESHPYLATPAKVAILS 439 (987)
T ss_pred HHHHHHHHHHhcCCCCHHHHHHHHHHHHHcccHHHHHHHHHHhcCCCcccccCHHHHHHHHHHHHhCCcccchHHHHHhc
Confidence 000 0 0 0
Q ss_pred ---------------------------------c--ccccchhhhhHHHhcCCHHHHHHHHHHHHhcCCCCHHHHHHHHH
Q 012143 253 ---------------------------------A--GAGANTGEGACLDQASAVNVAKECLLAALKADPKAAHIWANLAN 297 (470)
Q Consensus 253 ---------------------------------~--~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~la~ 297 (470)
. ....+..+|.++.. +++.+|+..+.+++...|++. ....+|.
T Consensus 440 ~~~~~~~~~~~~~~~~~~~~~~~~~~~al~~~p~~~~~~a~~~LG~~l~~-~~~~eAi~a~~~Al~~~Pd~~-~~L~lA~ 517 (987)
T PRK09782 440 KPLPLAEQRQWQSQLPGIADNCPAIVRLLGDMSPSYDAAAWNRLAKCYRD-TLPGVALYAWLQAEQRQPDAW-QHRAVAY 517 (987)
T ss_pred cccccchhHHHHhhhhhhhhhHHHHHHhcccCCCCCCHHHHHHHHHHHHh-CCcHHHHHHHHHHHHhCCchH-HHHHHHH
Confidence 0 00112445566655 677788888888888888754 3666677
Q ss_pred HHHHcCChhHHHHHHHHHHhcCCCcccHHHHHHHHHHH------------HhhhccCchHHh-------h---hhHHHHH
Q 012143 298 AYYLTGDHRSSGKCLEKAAKLEPNCMSTRYAVAVSRIK------------DAERSQEPTEQL-------S---WAGNEMA 355 (470)
Q Consensus 298 ~~~~~g~~~~A~~~~~~a~~~~p~~~~~~~~l~~~~~~------------~~~~~~~~~~~~-------~---~~~~~~~ 355 (470)
++...|++++|+..|+++....|.+ ..++.++...+. ............ . .......
T Consensus 518 al~~~Gr~eeAi~~~rka~~~~p~~-~a~~~la~all~~Gd~~eA~~~l~qAL~l~P~~~~l~~~La~~l~~~Gr~~eAl 596 (987)
T PRK09782 518 QAYQVEDYATALAAWQKISLHDMSN-EDLLAAANTAQAAGNGAARDRWLQQAEQRGLGDNALYWWLHAQRYIPGQPELAL 596 (987)
T ss_pred HHHHCCCHHHHHHHHHHHhccCCCc-HHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCccHHHHHHHHHHHHhCCCHHHHH
Confidence 7788899999999998887765553 334433321111 111000000000 0 1122233
Q ss_pred HHhhcCCCCCCCcHHHHHHHHHHHhccccHHHHHHHHHHHh--cchhhhhHhhHHHHHHHhccHHHHHHHHHHHHhcCCC
Q 012143 356 SILREGDPVQIEPPIAWAGFAAVQKTHHEVAAAFETEENEL--SKMEECAGAGESAFLDQASAVNVAKECLLAALKADPK 433 (470)
Q Consensus 356 ~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~--~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~p~ 433 (470)
..+.......|+ +..+..+|.++.+.|++++|+..+.+.+ +|....++..+|.++...|++++|+..|+++++.+|+
T Consensus 597 ~~~~~AL~l~P~-~~a~~~LA~~l~~lG~~deA~~~l~~AL~l~Pd~~~a~~nLG~aL~~~G~~eeAi~~l~~AL~l~P~ 675 (987)
T PRK09782 597 NDLTRSLNIAPS-ANAYVARATIYRQRHNVPAAVSDLRAALELEPNNSNYQAALGYALWDSGDIAQSREMLERAHKGLPD 675 (987)
T ss_pred HHHHHHHHhCCC-HHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCC
Confidence 333444444555 7899999999999999999999999954 5777788999999999999999999999999999999
Q ss_pred cHHHHHHHHHHHHHcCChHHHHHHHHHHHHhhccC
Q 012143 434 AAHIWANLANAYYLTGDHRSSGKCLEKVLMVYCSS 468 (470)
Q Consensus 434 ~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~ 468 (470)
++.+++++|.++..+|++++|+.+|++++++-|.+
T Consensus 676 ~~~a~~nLA~al~~lGd~~eA~~~l~~Al~l~P~~ 710 (987)
T PRK09782 676 DPALIRQLAYVNQRLDDMAATQHYARLVIDDIDNQ 710 (987)
T ss_pred CHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCC
Confidence 99999999999999999999999999999988754
|
|
| >KOG1126 consensus DNA-binding cell division cycle control protein [Cell cycle control, cell division, chromosome partitioning] | Back alignment and domain information |
|---|
Probab=99.97 E-value=2e-29 Score=225.04 Aligned_cols=295 Identities=16% Similarity=0.149 Sum_probs=251.3
Q ss_pred hhhhcChhhHHHHHHHHHHhCCCChhHHHHHHHHHHHhCChhHHHHHHHHHHHHHhhhhcccchhhhHHHHHHhhhcccc
Q 012143 51 SSREEKVSSLKTGLVHVARKMPKNAHAHFLLGLMYQRLGQPLKAVSSYEKAEEILLRCEADIARPELLSLVQIHHAQCLL 130 (470)
Q Consensus 51 ~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 130 (470)
....-+..+|...|.+.....++...++..+|..|+.+++|++|..+|+.+-+..|-.- ...+..+..-.|
T Consensus 329 ~~s~y~~~~A~~~~~klp~h~~nt~wvl~q~GrayFEl~~Y~~a~~~F~~~r~~~p~rv---~~meiyST~LWH------ 399 (638)
T KOG1126|consen 329 SLSQYNCREALNLFEKLPSHHYNTGWVLSQLGRAYFELIEYDQAERIFSLVRRIEPYRV---KGMEIYSTTLWH------ 399 (638)
T ss_pred HHHHHHHHHHHHHHHhhHHhcCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccccc---cchhHHHHHHHH------
Confidence 45667789999999998888899999999999999999999999999999988865421 112222211111
Q ss_pred ccccCCCccccccCcccHHHHHHH-HHHhhhcCccchHHHHHHHHHHHHcCChHHHHHHHHHHhhcCCCChHHHHHHHHH
Q 012143 131 PESSGDNSLDKELEPEELEEILSK-LKESMQSDTRQAVVWNTLGLILLKSGRLQSSISVLSSLLAVDPNNCDCIGNLGIA 209 (470)
Q Consensus 131 ~~~~~~~~~~~~~~~~~~~~A~~~-~~~~~~~~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~la~~ 209 (470)
+ .+ +-++.+ .+..+..+|+.|+.|..+|.||..+++++.|+++|+++++++|.+..+|..+|.-
T Consensus 400 ---L-----------q~-~v~Ls~Laq~Li~~~~~sPesWca~GNcfSLQkdh~~Aik~f~RAiQldp~faYayTLlGhE 464 (638)
T KOG1126|consen 400 ---L-----------QD-EVALSYLAQDLIDTDPNSPESWCALGNCFSLQKDHDTAIKCFKRAIQLDPRFAYAYTLLGHE 464 (638)
T ss_pred ---H-----------Hh-hHHHHHHHHHHHhhCCCCcHHHHHhcchhhhhhHHHHHHHHHHHhhccCCccchhhhhcCCh
Confidence 1 11 223333 4566788999999999999999999999999999999999999999999999999
Q ss_pred HHHcCCHHHHHHHHHHHHhhCCCChHHHHHHHHHHHhhhcccccccccchhhhhHHHhcCCHHHHHHHHHHHHhcCCCCH
Q 012143 210 YFQSGDMEQSAKCFQDLILKDQNHPAALINYAALLLCKYGSVLAGAGANTGEGACLDQASAVNVAKECLLAALKADPKAA 289 (470)
Q Consensus 210 ~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~p~~~ 289 (470)
+....++|.|..+|+.++..+|.+..+|+.+|.+|. ++++++.|.-.|++|++++|.+.
T Consensus 465 ~~~~ee~d~a~~~fr~Al~~~~rhYnAwYGlG~vy~---------------------Kqek~e~Ae~~fqkA~~INP~ns 523 (638)
T KOG1126|consen 465 SIATEEFDKAMKSFRKALGVDPRHYNAWYGLGTVYL---------------------KQEKLEFAEFHFQKAVEINPSNS 523 (638)
T ss_pred hhhhHHHHhHHHHHHhhhcCCchhhHHHHhhhhhee---------------------ccchhhHHHHHHHhhhcCCccch
Confidence 999999999999999999999999999999999988 79999999999999999999999
Q ss_pred HHHHHHHHHHHHcCChhHHHHHHHHHHhcCCCcccHHHHHHHHHHHHhhhccCchHHhhhhHHHHHHHhhcCCCCCCCcH
Q 012143 290 HIWANLANAYYLTGDHRSSGKCLEKAAKLEPNCMSTRYAVAVSRIKDAERSQEPTEQLSWAGNEMASILREGDPVQIEPP 369 (470)
Q Consensus 290 ~~~~~la~~~~~~g~~~~A~~~~~~a~~~~p~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 369 (470)
.....+|.++.+.|+.++|+..|++|+.++|.++...+..+
T Consensus 524 vi~~~~g~~~~~~k~~d~AL~~~~~A~~ld~kn~l~~~~~~--------------------------------------- 564 (638)
T KOG1126|consen 524 VILCHIGRIQHQLKRKDKALQLYEKAIHLDPKNPLCKYHRA--------------------------------------- 564 (638)
T ss_pred hHHhhhhHHHHHhhhhhHHHHHHHHHHhcCCCCchhHHHHH---------------------------------------
Confidence 99999999999999999999999999999999876554332
Q ss_pred HHHHHHHHHHhccccHHHHHHHHHHHhcchhhhhHhhHHHHHHHhccHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHcC
Q 012143 370 IAWAGFAAVQKTHHEVAAAFETEENELSKMEECAGAGESAFLDQASAVNVAKECLLAALKADPKAAHIWANLANAYYLTG 449 (470)
Q Consensus 370 ~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g 449 (470)
.++...+++++|+..+++..++.|+...+++.+|.+|.++|
T Consensus 565 ---------------------------------------~il~~~~~~~eal~~LEeLk~~vP~es~v~~llgki~k~~~ 605 (638)
T KOG1126|consen 565 ---------------------------------------SILFSLGRYVEALQELEELKELVPQESSVFALLGKIYKRLG 605 (638)
T ss_pred ---------------------------------------HHHHhhcchHHHHHHHHHHHHhCcchHHHHHHHHHHHHHHc
Confidence 26666777888888888888888888888888888888888
Q ss_pred ChHHHHHHHHHHHHhhccC
Q 012143 450 DHRSSGKCLEKVLMVYCSS 468 (470)
Q Consensus 450 ~~~~A~~~~~~al~~~~~~ 468 (470)
+.+.|+..|.=|+++-|+.
T Consensus 606 ~~~~Al~~f~~A~~ldpkg 624 (638)
T KOG1126|consen 606 NTDLALLHFSWALDLDPKG 624 (638)
T ss_pred cchHHHHhhHHHhcCCCcc
Confidence 8888888888888777653
|
|
| >KOG1155 consensus Anaphase-promoting complex (APC), Cdc23 subunit [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=99.96 E-value=1.9e-26 Score=196.99 Aligned_cols=254 Identities=14% Similarity=0.136 Sum_probs=195.0
Q ss_pred cCcccHHHHHHHHHHhhhcCccchHHHHHHHHHHHHcCChHHHHHHHHHHhhcCCCChHHHHHHHHHHHHcCCHHHHHHH
Q 012143 143 LEPEELEEILSKLKESMQSDTRQAVVWNTLGLILLKSGRLQSSISVLSSLLAVDPNNCDCIGNLGIAYFQSGDMEQSAKC 222 (470)
Q Consensus 143 ~~~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~la~~~~~~g~~~~A~~~ 222 (470)
....++++|+..|+.+.+.+|...+-.-...++++-.++-.+-.-.-+.+..++.-.++....+|..|...++.++|+.+
T Consensus 273 y~~rDfD~a~s~Feei~knDPYRl~dmdlySN~LYv~~~~skLs~LA~~v~~idKyR~ETCCiIaNYYSlr~eHEKAv~Y 352 (559)
T KOG1155|consen 273 YNQRDFDQAESVFEEIRKNDPYRLDDMDLYSNVLYVKNDKSKLSYLAQNVSNIDKYRPETCCIIANYYSLRSEHEKAVMY 352 (559)
T ss_pred hhhhhHHHHHHHHHHHHhcCCCcchhHHHHhHHHHHHhhhHHHHHHHHHHHHhccCCccceeeehhHHHHHHhHHHHHHH
Confidence 34556677777777777777766555555555555554433333344445555655666666777777777777888888
Q ss_pred HHHHHhhCCCChHHHHHHHHHHHhhhcccccccccchhhhhHHHhcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHc
Q 012143 223 FQDLILKDQNHPAALINYAALLLCKYGSVLAGAGANTGEGACLDQASAVNVAKECLLAALKADPKAAHIWANLANAYYLT 302 (470)
Q Consensus 223 ~~~~l~~~p~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~la~~~~~~ 302 (470)
|+++++++|....+|..+|.-+. ..++...|++.|++|++++|.+..+|+.||++|..+
T Consensus 353 FkRALkLNp~~~~aWTLmGHEyv---------------------EmKNt~AAi~sYRrAvdi~p~DyRAWYGLGQaYeim 411 (559)
T KOG1155|consen 353 FKRALKLNPKYLSAWTLMGHEYV---------------------EMKNTHAAIESYRRAVDINPRDYRAWYGLGQAYEIM 411 (559)
T ss_pred HHHHHhcCcchhHHHHHhhHHHH---------------------HhcccHHHHHHHHHHHhcCchhHHHHhhhhHHHHHh
Confidence 88888888877777777777776 577777788888888888888888888888888888
Q ss_pred CChhHHHHHHHHHHhcCCCcccHHHHHHHHHHHHhhhccCchHHhhhhHHHHHHHhhcCCCCCCCcHHHHHHHHHHHhcc
Q 012143 303 GDHRSSGKCLEKAAKLEPNCMSTRYAVAVSRIKDAERSQEPTEQLSWAGNEMASILREGDPVQIEPPIAWAGFAAVQKTH 382 (470)
Q Consensus 303 g~~~~A~~~~~~a~~~~p~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 382 (470)
+.+.=|+-+|+++....|.+ +.+|..+|.+|.+.
T Consensus 412 ~Mh~YaLyYfqkA~~~kPnD----------------------------------------------sRlw~aLG~CY~kl 445 (559)
T KOG1155|consen 412 KMHFYALYYFQKALELKPND----------------------------------------------SRLWVALGECYEKL 445 (559)
T ss_pred cchHHHHHHHHHHHhcCCCc----------------------------------------------hHHHHHHHHHHHHh
Confidence 87777888888887777774 46899999999999
Q ss_pred ccHHHHHHHHHHHhcch--hhhhHhhHHHHHHHhccHHHHHHHHHHHHh-------cCCCcHHHHHHHHHHHHHcCChHH
Q 012143 383 HEVAAAFETEENELSKM--EECAGAGESAFLDQASAVNVAKECLLAALK-------ADPKAAHIWANLANAYYLTGDHRS 453 (470)
Q Consensus 383 ~~~~~A~~~~~~~~~~~--~~~~~~~l~~~~~~~~~~~~A~~~~~~al~-------~~p~~~~~~~~la~~~~~~g~~~~ 453 (470)
++.++|++.|..++.-. +..+++.+|.+|.+.++.++|..+|++.++ ..|+...+...|+.-+.+.+++++
T Consensus 446 ~~~~eAiKCykrai~~~dte~~~l~~LakLye~l~d~~eAa~~yek~v~~~~~eg~~~~~t~ka~~fLA~~f~k~~~~~~ 525 (559)
T KOG1155|consen 446 NRLEEAIKCYKRAILLGDTEGSALVRLAKLYEELKDLNEAAQYYEKYVEVSELEGEIDDETIKARLFLAEYFKKMKDFDE 525 (559)
T ss_pred ccHHHHHHHHHHHHhccccchHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHhhcccchHHHHHHHHHHHHHHhhcchHH
Confidence 99999999999977644 448899999999999999999999999998 456667788889999999999999
Q ss_pred HHHHHHHHHH
Q 012143 454 SGKCLEKVLM 463 (470)
Q Consensus 454 A~~~~~~al~ 463 (470)
|-.+..+++.
T Consensus 526 As~Ya~~~~~ 535 (559)
T KOG1155|consen 526 ASYYATLVLK 535 (559)
T ss_pred HHHHHHHHhc
Confidence 9998877664
|
|
| >KOG1126 consensus DNA-binding cell division cycle control protein [Cell cycle control, cell division, chromosome partitioning] | Back alignment and domain information |
|---|
Probab=99.96 E-value=7.1e-28 Score=215.16 Aligned_cols=271 Identities=15% Similarity=0.170 Sum_probs=233.6
Q ss_pred hhhhhhhhhhhhhhHHHHHHHHHHHHhcCCCCcchhhhcccchhhhhcChhhHHHHHHHHHHhCCCChhHHHHHHHHHHH
Q 012143 8 AEVEGKKINKLGKCRSRISSKMDSALEFGVDADGDQSGLGTSSSSREEKVSSLKTGLVHVARKMPKNAHAHFLLGLMYQR 87 (470)
Q Consensus 8 ~~~~~~~~~~~g~~~~a~~~~~~~~l~~~p~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~l~~~~~~ 87 (470)
...-|+.++++++++++. ..|+.+=...|-.....-....+ ++...+--+.--+-+..+..+|..|+.|..+|.||..
T Consensus 356 l~q~GrayFEl~~Y~~a~-~~F~~~r~~~p~rv~~meiyST~-LWHLq~~v~Ls~Laq~Li~~~~~sPesWca~GNcfSL 433 (638)
T KOG1126|consen 356 LSQLGRAYFELIEYDQAE-RIFSLVRRIEPYRVKGMEIYSTT-LWHLQDEVALSYLAQDLIDTDPNSPESWCALGNCFSL 433 (638)
T ss_pred HHHHHHHHHHHHHHHHHH-HHHHHHHhhccccccchhHHHHH-HHHHHhhHHHHHHHHHHHhhCCCCcHHHHHhcchhhh
Confidence 344566667777777666 66666666666555544444444 4444444444455555678899999999999999999
Q ss_pred hCChhHHHHHHHHHHHHHhhhhcccchhhhHHHHHHhhhccccccccCCCccccccCcccHHHHHHHHHHhhhcCccchH
Q 012143 88 LGQPLKAVSSYEKAEEILLRCEADIARPELLSLVQIHHAQCLLPESSGDNSLDKELEPEELEEILSKLKESMQSDTRQAV 167 (470)
Q Consensus 88 ~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~p~~~~ 167 (470)
+++++.|+++|++|+.++|.. +.+|..+|.. +.....++.|..+|+.++..+|.+..
T Consensus 434 Qkdh~~Aik~f~RAiQldp~f-------------------aYayTLlGhE----~~~~ee~d~a~~~fr~Al~~~~rhYn 490 (638)
T KOG1126|consen 434 QKDHDTAIKCFKRAIQLDPRF-------------------AYAYTLLGHE----SIATEEFDKAMKSFRKALGVDPRHYN 490 (638)
T ss_pred hhHHHHHHHHHHHhhccCCcc-------------------chhhhhcCCh----hhhhHHHHhHHHHHHhhhcCCchhhH
Confidence 999999999999999998752 3445555655 67889999999999999999999999
Q ss_pred HHHHHHHHHHHcCChHHHHHHHHHHhhcCCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCChHHHHHHHHHHHhh
Q 012143 168 VWNTLGLILLKSGRLQSSISVLSSLLAVDPNNCDCIGNLGIAYFQSGDMEQSAKCFQDLILKDQNHPAALINYAALLLCK 247 (470)
Q Consensus 168 ~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~l~~~~~~~ 247 (470)
+|+.+|.+|.++++++.|.-.|++|++++|.+......+|.++.+.|+.++|+..|++|+.++|.++-..+..+.++.
T Consensus 491 AwYGlG~vy~Kqek~e~Ae~~fqkA~~INP~nsvi~~~~g~~~~~~k~~d~AL~~~~~A~~ld~kn~l~~~~~~~il~-- 568 (638)
T KOG1126|consen 491 AWYGLGTVYLKQEKLEFAEFHFQKAVEINPSNSVILCHIGRIQHQLKRKDKALQLYEKAIHLDPKNPLCKYHRASILF-- 568 (638)
T ss_pred HHHhhhhheeccchhhHHHHHHHhhhcCCccchhHHhhhhHHHHHhhhhhHHHHHHHHHHhcCCCCchhHHHHHHHHH--
Confidence 999999999999999999999999999999999999999999999999999999999999999999999999998888
Q ss_pred hcccccccccchhhhhHHHhcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCChhHHHHHHHHHHhcCCCccc
Q 012143 248 YGSVLAGAGANTGEGACLDQASAVNVAKECLLAALKADPKAAHIWANLANAYYLTGDHRSSGKCLEKAAKLEPNCMS 324 (470)
Q Consensus 248 ~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~p~~~~ 324 (470)
..+++++|+..+++..++.|+...++..+|.+|.+.|+.+.|+..|.-|..++|.-..
T Consensus 569 -------------------~~~~~~eal~~LEeLk~~vP~es~v~~llgki~k~~~~~~~Al~~f~~A~~ldpkg~~ 626 (638)
T KOG1126|consen 569 -------------------SLGRYVEALQELEELKELVPQESSVFALLGKIYKRLGNTDLALLHFSWALDLDPKGAQ 626 (638)
T ss_pred -------------------hhcchHHHHHHHHHHHHhCcchHHHHHHHHHHHHHHccchHHHHhhHHHhcCCCccch
Confidence 6999999999999999999999999999999999999999999999999999998554
|
|
| >PRK11788 tetratricopeptide repeat protein; Provisional | Back alignment and domain information |
|---|
Probab=99.96 E-value=2.4e-26 Score=212.57 Aligned_cols=311 Identities=15% Similarity=0.113 Sum_probs=223.3
Q ss_pred CcchhhhcccchhhhhcChhhHHHHHHHHHHhCCCChhHHHHHHHHHHHhCChhHHHHHHHHHHHHHhhhhcccchhhhH
Q 012143 39 ADGDQSGLGTSSSSREEKVSSLKTGLVHVARKMPKNAHAHFLLGLMYQRLGQPLKAVSSYEKAEEILLRCEADIARPELL 118 (470)
Q Consensus 39 ~~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~ 118 (470)
.....+..|.. +...|++++|...|.++++.+|+++.++..+|.++...|++++|+..+++++...+.+
T Consensus 34 ~~~~~y~~g~~-~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~~~~---------- 102 (389)
T PRK11788 34 RLSRDYFKGLN-FLLNEQPDKAIDLFIEMLKVDPETVELHLALGNLFRRRGEVDRAIRIHQNLLSRPDLT---------- 102 (389)
T ss_pred hccHHHHHHHH-HHhcCChHHHHHHHHHHHhcCcccHHHHHHHHHHHHHcCcHHHHHHHHHHHhcCCCCC----------
Confidence 45566777888 8899999999999999999999999999999999999999999999998877631000
Q ss_pred HHHHHhhhccccccccCCCccccccCcccHHHHHHHHHHhhhcCccchHHHHHHHHHHHHcCChHHHHHHHHHHhhcCCC
Q 012143 119 SLVQIHHAQCLLPESSGDNSLDKELEPEELEEILSKLKESMQSDTRQAVVWNTLGLILLKSGRLQSSISVLSSLLAVDPN 198 (470)
Q Consensus 119 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~ 198 (470)
.+....++..+|.+|...|++++|+..|+++++.+|.
T Consensus 103 -------------------------------------------~~~~~~~~~~La~~~~~~g~~~~A~~~~~~~l~~~~~ 139 (389)
T PRK11788 103 -------------------------------------------REQRLLALQELGQDYLKAGLLDRAEELFLQLVDEGDF 139 (389)
T ss_pred -------------------------------------------HHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHcCCcc
Confidence 0011235666777777777777777777777777777
Q ss_pred ChHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCChHHHHHHHHHHHhhhcccccccccchhhhhHHHhcCCHHHHHHHH
Q 012143 199 NCDCIGNLGIAYFQSGDMEQSAKCFQDLILKDQNHPAALINYAALLLCKYGSVLAGAGANTGEGACLDQASAVNVAKECL 278 (470)
Q Consensus 199 ~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~ 278 (470)
+..++..++.++...|++++|++.+++++...|.+.... .+..+. .+|.++...|++++|+..|
T Consensus 140 ~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~--~~~~~~--------------~la~~~~~~~~~~~A~~~~ 203 (389)
T PRK11788 140 AEGALQQLLEIYQQEKDWQKAIDVAERLEKLGGDSLRVE--IAHFYC--------------ELAQQALARGDLDAARALL 203 (389)
T ss_pred hHHHHHHHHHHHHHhchHHHHHHHHHHHHHhcCCcchHH--HHHHHH--------------HHHHHHHhCCCHHHHHHHH
Confidence 777777777777777777777777777777666543210 111111 1233344677777777777
Q ss_pred HHHHhcCCCCHHHHHHHHHHHHHcCChhHHHHHHHHHHhcCCCcccHHHHHHHHHHHHhhhccCchHHhhhhHHHHHHHh
Q 012143 279 LAALKADPKAAHIWANLANAYYLTGDHRSSGKCLEKAAKLEPNCMSTRYAVAVSRIKDAERSQEPTEQLSWAGNEMASIL 358 (470)
Q Consensus 279 ~~~~~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~p~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 358 (470)
+++++..|++..++..+|.++...|++++|+..+++++..+|.+.
T Consensus 204 ~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~p~~~----------------------------------- 248 (389)
T PRK11788 204 KKALAADPQCVRASILLGDLALAQGDYAAAIEALERVEEQDPEYL----------------------------------- 248 (389)
T ss_pred HHHHhHCcCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHChhhH-----------------------------------
Confidence 777777777777777777777777777777777777777665521
Q ss_pred hcCCCCCCCcHHHHHHHHHHHhccccHHHHHHHHHHHhc--chhhhhHhhHHHHHHHhccHHHHHHHHHHHHhcCCCcHH
Q 012143 359 REGDPVQIEPPIAWAGFAAVQKTHHEVAAAFETEENELS--KMEECAGAGESAFLDQASAVNVAKECLLAALKADPKAAH 436 (470)
Q Consensus 359 ~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~--~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~p~~~~ 436 (470)
...+..++.++...|++++|+..+.+.+. |.. .....++.++...|++++|+..++++++..|++..
T Consensus 249 ----------~~~~~~l~~~~~~~g~~~~A~~~l~~~~~~~p~~-~~~~~la~~~~~~g~~~~A~~~l~~~l~~~P~~~~ 317 (389)
T PRK11788 249 ----------SEVLPKLMECYQALGDEAEGLEFLRRALEEYPGA-DLLLALAQLLEEQEGPEAAQALLREQLRRHPSLRG 317 (389)
T ss_pred ----------HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCc-hHHHHHHHHHHHhCCHHHHHHHHHHHHHhCcCHHH
Confidence 12345566667777777777777776443 322 23467888899999999999999999999999886
Q ss_pred HHHHHHHHHHH--cCChHHHHHHHHHHHHhh
Q 012143 437 IWANLANAYYL--TGDHRSSGKCLEKVLMVY 465 (470)
Q Consensus 437 ~~~~la~~~~~--~g~~~~A~~~~~~al~~~ 465 (470)
....++..... .|+..+|+..+++.++..
T Consensus 318 ~~~l~~~~~~~~~~g~~~~a~~~~~~~~~~~ 348 (389)
T PRK11788 318 FHRLLDYHLAEAEEGRAKESLLLLRDLVGEQ 348 (389)
T ss_pred HHHHHHHhhhccCCccchhHHHHHHHHHHHH
Confidence 66555544422 568999999999888744
|
|
| >PRK10049 pgaA outer membrane protein PgaA; Provisional | Back alignment and domain information |
|---|
Probab=99.96 E-value=2e-26 Score=227.54 Aligned_cols=381 Identities=11% Similarity=0.020 Sum_probs=283.2
Q ss_pred CCCcchhhhcccchhhhhcChhhHHHHHHHHHHhCCCChhHHHHHHHHHHHhCChhHHHHHHHHHHHHHhhhhcccchhh
Q 012143 37 VDADGDQSGLGTSSSSREEKVSSLKTGLVHVARKMPKNAHAHFLLGLMYQRLGQPLKAVSSYEKAEEILLRCEADIARPE 116 (470)
Q Consensus 37 p~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~ 116 (470)
|-+.....-.-.+ ..-.|+.++|+..+.++...+|....++..+|.++...|++++|+..|+++++.+|.+..
T Consensus 12 ~~~~~~~~d~~~i-a~~~g~~~~A~~~~~~~~~~~~~~a~~~~~lA~~~~~~g~~~~A~~~~~~al~~~P~~~~------ 84 (765)
T PRK10049 12 ALSNNQIADWLQI-ALWAGQDAEVITVYNRYRVHMQLPARGYAAVAVAYRNLKQWQNSLTLWQKALSLEPQNDD------ 84 (765)
T ss_pred CCCHHHHHHHHHH-HHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHH------
Confidence 3333333333444 667899999999999999889999999999999999999999999999999999876421
Q ss_pred hHHHHHHhhhccccccccCCCccccccCcccHHHHHHHHHHhhhcCccchHHHHHHHHHHHHcCChHHHHHHHHHHhhcC
Q 012143 117 LLSLVQIHHAQCLLPESSGDNSLDKELEPEELEEILSKLKESMQSDTRQAVVWNTLGLILLKSGRLQSSISVLSSLLAVD 196 (470)
Q Consensus 117 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~ 196 (470)
++..++.+ +...|++++|+..+++++...|+++. +..+|.++...|++++|+..++++++..
T Consensus 85 ------a~~~la~~-----------l~~~g~~~eA~~~l~~~l~~~P~~~~-~~~la~~l~~~g~~~~Al~~l~~al~~~ 146 (765)
T PRK10049 85 ------YQRGLILT-----------LADAGQYDEALVKAKQLVSGAPDKAN-LLALAYVYKRAGRHWDELRAMTQALPRA 146 (765)
T ss_pred ------HHHHHHHH-----------HHHCCCHHHHHHHHHHHHHhCCCCHH-HHHHHHHHHHCCCHHHHHHHHHHHHHhC
Confidence 12233333 34667789999999999999999999 9999999999999999999999999999
Q ss_pred CCChHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCChHHH-----HHHHHHHHhhhcccccccccchhhhhHHHhcCCH
Q 012143 197 PNNCDCIGNLGIAYFQSGDMEQSAKCFQDLILKDQNHPAAL-----INYAALLLCKYGSVLAGAGANTGEGACLDQASAV 271 (470)
Q Consensus 197 ~~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~-----~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 271 (470)
|+++.++..++.++...|..++|+..++++.. .|...... ..+..+.. +......+++
T Consensus 147 P~~~~~~~~la~~l~~~~~~e~Al~~l~~~~~-~p~~~~~l~~~~~~~~~r~~~----------------~~~~~~~~r~ 209 (765)
T PRK10049 147 PQTQQYPTEYVQALRNNRLSAPALGAIDDANL-TPAEKRDLEADAAAELVRLSF----------------MPTRSEKERY 209 (765)
T ss_pred CCCHHHHHHHHHHHHHCCChHHHHHHHHhCCC-CHHHHHHHHHHHHHHHHHhhc----------------ccccChhHHH
Confidence 99999999999999999999999999998876 65531111 11111111 0111123345
Q ss_pred ---HHHHHHHHHHHhcCCCCHHH-------HHH-HHHHHHHcCChhHHHHHHHHHHhcCCCccc-HHHHHHHHHHHHhhh
Q 012143 272 ---NVAKECLLAALKADPKAAHI-------WAN-LANAYYLTGDHRSSGKCLEKAAKLEPNCMS-TRYAVAVSRIKDAER 339 (470)
Q Consensus 272 ---~~A~~~~~~~~~~~p~~~~~-------~~~-la~~~~~~g~~~~A~~~~~~a~~~~p~~~~-~~~~l~~~~~~~~~~ 339 (470)
++|+..++.+++..|.++.. ... ++ .+...|++++|+..|+++++..|..+. +...++...+.
T Consensus 210 ~~ad~Al~~~~~ll~~~~~~p~~~~~~~~a~~d~l~-~Ll~~g~~~eA~~~~~~ll~~~~~~P~~a~~~la~~yl~---- 284 (765)
T PRK10049 210 AIADRALAQYDALEALWHDNPDATADYQRARIDRLG-ALLARDRYKDVISEYQRLKAEGQIIPPWAQRWVASAYLK---- 284 (765)
T ss_pred HHHHHHHHHHHHHHhhcccCCccchHHHHHHHHHHH-HHHHhhhHHHHHHHHHHhhccCCCCCHHHHHHHHHHHHh----
Confidence 78999999999764443322 222 33 346789999999999999988644332 12222221111
Q ss_pred ccCchHHhhhhHHHHHHHhhcCCCCCCCcHHHHHHHHHHHhccccHHHHHHHHHHHhcchh-----------------hh
Q 012143 340 SQEPTEQLSWAGNEMASILREGDPVQIEPPIAWAGFAAVQKTHHEVAAAFETEENELSKME-----------------EC 402 (470)
Q Consensus 340 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~-----------------~~ 402 (470)
... ...+...+...+................++.++...|++++|+..+.......+ ..
T Consensus 285 -~g~---~e~A~~~l~~~l~~~p~~~~~~~~~~~~L~~a~~~~g~~~eA~~~l~~~~~~~P~~~~~~~~~~~~p~~~~~~ 360 (765)
T PRK10049 285 -LHQ---PEKAQSILTELFYHPETIADLSDEELADLFYSLLESENYPGALTVTAHTINNSPPFLRLYGSPTSIPNDDWLQ 360 (765)
T ss_pred -cCC---cHHHHHHHHHHhhcCCCCCCCChHHHHHHHHHHHhcccHHHHHHHHHHHhhcCCceEeecCCCCCCCCchHHH
Confidence 111 223333333333322111111235677788888999999999999988655322 23
Q ss_pred hHhhHHHHHHHhccHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHcCChHHHHHHHHHHHHhhccC
Q 012143 403 AGAGESAFLDQASAVNVAKECLLAALKADPKAAHIWANLANAYYLTGDHRSSGKCLEKVLMVYCSS 468 (470)
Q Consensus 403 ~~~~l~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~ 468 (470)
+...+|.++...|++++|+..+++++...|+++.++..+|.++...|++++|+..+++++++.|..
T Consensus 361 a~~~~a~~l~~~g~~~eA~~~l~~al~~~P~n~~l~~~lA~l~~~~g~~~~A~~~l~~al~l~Pd~ 426 (765)
T PRK10049 361 GQSLLSQVAKYSNDLPQAEMRARELAYNAPGNQGLRIDYASVLQARGWPRAAENELKKAEVLEPRN 426 (765)
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCC
Confidence 567889999999999999999999999999999999999999999999999999999999998764
|
|
| >PRK09782 bacteriophage N4 receptor, outer membrane subunit; Provisional | Back alignment and domain information |
|---|
Probab=99.95 E-value=1.2e-24 Score=215.06 Aligned_cols=395 Identities=11% Similarity=0.008 Sum_probs=298.0
Q ss_pred HHHhcCCCCcchhhhcccchhhhhcChhhHHHHHHHHHHhCCCChhHHHHHHHHHHHhCChhHHHHHHHHHHHHHhhhhc
Q 012143 31 SALEFGVDADGDQSGLGTSSSSREEKVSSLKTGLVHVARKMPKNAHAHFLLGLMYQRLGQPLKAVSSYEKAEEILLRCEA 110 (470)
Q Consensus 31 ~~l~~~p~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~ 110 (470)
+.+.+.|.+.. ..+........+...++...+....+..|.+..++..++......|++++|...|+++... +.+..
T Consensus 334 ~~~~~~~~~~~--~~~r~~~~~~~~~~~~~~~~~~~~y~~~~~~~~~l~q~~~~~~~~~~~~~a~~~~~~~~~~-~~~~~ 410 (987)
T PRK09782 334 KLLATLPANEM--LEERYAVSVATRNKAEALRLARLLYQQEPANLTRLDQLTWQLMQNGQSREAADLLLQRYPF-QGDAR 410 (987)
T ss_pred HHhcCCCcchH--HHHHHhhccccCchhHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcccHHHHHHHHHHhcCC-Ccccc
Confidence 44667776663 2222221445588888888888888888999999999999999999999999999999875 22211
Q ss_pred ccchhhhH-HHHHHhhhcccccc-----ccCCC--ccccccCcccHHH---HHHHHHHhhhcCcc--chHHHHHHHHHHH
Q 012143 111 DIARPELL-SLVQIHHAQCLLPE-----SSGDN--SLDKELEPEELEE---ILSKLKESMQSDTR--QAVVWNTLGLILL 177 (470)
Q Consensus 111 ~~~~~~~~-~~~~~~~~~~~~~~-----~~~~~--~~~~~~~~~~~~~---A~~~~~~~~~~~p~--~~~~~~~l~~~~~ 177 (470)
. .+... .++.++.....+.. .++.. ......-.|++.+ +...+.+++...|. ++.+++.+|.++.
T Consensus 411 ~--~~~l~~~l~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~al~~~p~~~~~~a~~~LG~~l~ 488 (987)
T PRK09782 411 L--SQTLMARLASLLESHPYLATPAKVAILSKPLPLAEQRQWQSQLPGIADNCPAIVRLLGDMSPSYDAAAWNRLAKCYR 488 (987)
T ss_pred c--CHHHHHHHHHHHHhCCcccchHHHHHhccccccchhHHHHhhhhhhhhhHHHHHHhcccCCCCCCHHHHHHHHHHHH
Confidence 1 11111 22222222211000 00000 0000112344433 55566666777777 8999999999998
Q ss_pred HcCChHHHHHHHHHHhhcCCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCChHHHHHHHHHHHhhhccccccccc
Q 012143 178 KSGRLQSSISVLSSLLAVDPNNCDCIGNLGIAYFQSGDMEQSAKCFQDLILKDQNHPAALINYAALLLCKYGSVLAGAGA 257 (470)
Q Consensus 178 ~~~~~~~A~~~~~~a~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~l~~~~~~~~~~~~~~~~~ 257 (470)
. +++.+|+..+.+++...|++. ....+|.++...|++++|+..|++++...|.+ ..+..++.++.
T Consensus 489 ~-~~~~eAi~a~~~Al~~~Pd~~-~~L~lA~al~~~Gr~eeAi~~~rka~~~~p~~-~a~~~la~all------------ 553 (987)
T PRK09782 489 D-TLPGVALYAWLQAEQRQPDAW-QHRAVAYQAYQVEDYATALAAWQKISLHDMSN-EDLLAAANTAQ------------ 553 (987)
T ss_pred h-CCcHHHHHHHHHHHHhCCchH-HHHHHHHHHHHCCCHHHHHHHHHHHhccCCCc-HHHHHHHHHHH------------
Confidence 7 899999999999999999754 46677888889999999999999987775554 45666676666
Q ss_pred chhhhhHHHhcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCChhHHHHHHHHHHhcCCCcccHHHHHHHHHHHHh
Q 012143 258 NTGEGACLDQASAVNVAKECLLAALKADPKAAHIWANLANAYYLTGDHRSSGKCLEKAAKLEPNCMSTRYAVAVSRIKDA 337 (470)
Q Consensus 258 ~~~~~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~p~~~~~~~~l~~~~~~~~ 337 (470)
..|++++|+.+|+++++.+|+....+..++......|++++|+..|+++++.+|+ ...+.+++.....
T Consensus 554 ---------~~Gd~~eA~~~l~qAL~l~P~~~~l~~~La~~l~~~Gr~~eAl~~~~~AL~l~P~-~~a~~~LA~~l~~-- 621 (987)
T PRK09782 554 ---------AAGNGAARDRWLQQAEQRGLGDNALYWWLHAQRYIPGQPELALNDLTRSLNIAPS-ANAYVARATIYRQ-- 621 (987)
T ss_pred ---------HCCCHHHHHHHHHHHHhcCCccHHHHHHHHHHHHhCCCHHHHHHHHHHHHHhCCC-HHHHHHHHHHHHH--
Confidence 6899999999999999999998888887777777889999999999999999996 6677666653322
Q ss_pred hhccCchHHhhhhHHHHHHHhhcCCCCCCCcHHHHHHHHHHHhccccHHHHHHHHHHHhc--chhhhhHhhHHHHHHHhc
Q 012143 338 ERSQEPTEQLSWAGNEMASILREGDPVQIEPPIAWAGFAAVQKTHHEVAAAFETEENELS--KMEECAGAGESAFLDQAS 415 (470)
Q Consensus 338 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~--~~~~~~~~~l~~~~~~~~ 415 (470)
. .. ..+....+.......|+++.++.++|.++...|++++|+..+.+++. |....+++.+|.++...|
T Consensus 622 ---l---G~----~deA~~~l~~AL~l~Pd~~~a~~nLG~aL~~~G~~eeAi~~l~~AL~l~P~~~~a~~nLA~al~~lG 691 (987)
T PRK09782 622 ---R---HN----VPAAVSDLRAALELEPNNSNYQAALGYALWDSGDIAQSREMLERAHKGLPDDPALIRQLAYVNQRLD 691 (987)
T ss_pred ---C---CC----HHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCC
Confidence 1 11 11222334444445677889999999999999999999999999654 777788999999999999
Q ss_pred cHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHcCChHHHHHHHHHHHHhhcc
Q 012143 416 AVNVAKECLLAALKADPKAAHIWANLANAYYLTGDHRSSGKCLEKVLMVYCS 467 (470)
Q Consensus 416 ~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~ 467 (470)
++++|+..|+++++++|+++.+....|.+.....+++.|.+.++++..+-+.
T Consensus 692 d~~eA~~~l~~Al~l~P~~a~i~~~~g~~~~~~~~~~~a~~~~~r~~~~~~~ 743 (987)
T PRK09782 692 DMAATQHYARLVIDDIDNQALITPLTPEQNQQRFNFRRLHEEVGRRWTFSFD 743 (987)
T ss_pred CHHHHHHHHHHHHhcCCCCchhhhhhhHHHHHHHHHHHHHHHHHHHhhcCcc
Confidence 9999999999999999999999999999999999999999999999877654
|
|
| >KOG0624 consensus dsRNA-activated protein kinase inhibitor P58, contains TPR and DnaJ domains [Defense mechanisms] | Back alignment and domain information |
|---|
Probab=99.95 E-value=9.7e-26 Score=185.54 Aligned_cols=217 Identities=14% Similarity=0.146 Sum_probs=186.7
Q ss_pred hhhhhhhhhhhHHHHHHHHHHHHhcCCCCcchhhhcccchhhhhcChhhHHHHHHHHHHhCCCChhHHHHHHHHHHHhCC
Q 012143 11 EGKKINKLGKCRSRISSKMDSALEFGVDADGDQSGLGTSSSSREEKVSSLKTGLVHVARKMPKNAHAHFLLGLMYQRLGQ 90 (470)
Q Consensus 11 ~~~~~~~~g~~~~a~~~~~~~~l~~~p~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~l~~~~~~~g~ 90 (470)
-|+.+..-|.+..|+ +.|-.+++.+|++..+++..|.+ ++..|+-..|...+.+++++.|+...+....|.+++++|+
T Consensus 44 lGk~lla~~Q~sDAL-t~yHaAve~dp~~Y~aifrRaT~-yLAmGksk~al~Dl~rVlelKpDF~~ARiQRg~vllK~Ge 121 (504)
T KOG0624|consen 44 LGKELLARGQLSDAL-THYHAAVEGDPNNYQAIFRRATV-YLAMGKSKAALQDLSRVLELKPDFMAARIQRGVVLLKQGE 121 (504)
T ss_pred HHHHHHHhhhHHHHH-HHHHHHHcCCchhHHHHHHHHHH-HhhhcCCccchhhHHHHHhcCccHHHHHHHhchhhhhccc
Confidence 488888999999999 99999999999999999999999 9999999999999999999999999999999999999999
Q ss_pred hhHHHHHHHHHHHHHhhhhcccchhhhHHHHHHhhhccccccccCCCccccccCcccHHHHHHHHHHhhhcCccchHHHH
Q 012143 91 PLKAVSSYEKAEEILLRCEADIARPELLSLVQIHHAQCLLPESSGDNSLDKELEPEELEEILSKLKESMQSDTRQAVVWN 170 (470)
Q Consensus 91 ~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~ 170 (470)
+++|...|+..+..+|++........-+..+.-+..+-. .+..++..|+...|+.+....+++.|.++..+.
T Consensus 122 le~A~~DF~~vl~~~~s~~~~~eaqskl~~~~e~~~l~~--------ql~s~~~~GD~~~ai~~i~~llEi~~Wda~l~~ 193 (504)
T KOG0624|consen 122 LEQAEADFDQVLQHEPSNGLVLEAQSKLALIQEHWVLVQ--------QLKSASGSGDCQNAIEMITHLLEIQPWDASLRQ 193 (504)
T ss_pred HHHHHHHHHHHHhcCCCcchhHHHHHHHHhHHHHHHHHH--------HHHHHhcCCchhhHHHHHHHHHhcCcchhHHHH
Confidence 999999999999998865433222221111111111100 011135678889999999999999999999999
Q ss_pred HHHHHHHHcCChHHHHHHHHHHhhcCCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCChHHH
Q 012143 171 TLGLILLKSGRLQSSISVLSSLLAVDPNNCDCIGNLGIAYFQSGDMEQSAKCFQDLILKDQNHPAAL 237 (470)
Q Consensus 171 ~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~ 237 (470)
..+.||...|++..|+..++.+-++..++.+.++.++.+++..|+.+.++...+.+++++|++...+
T Consensus 194 ~Rakc~i~~~e~k~AI~Dlk~askLs~DnTe~~ykis~L~Y~vgd~~~sL~~iRECLKldpdHK~Cf 260 (504)
T KOG0624|consen 194 ARAKCYIAEGEPKKAIHDLKQASKLSQDNTEGHYKISQLLYTVGDAENSLKEIRECLKLDPDHKLCF 260 (504)
T ss_pred HHHHHHHhcCcHHHHHHHHHHHHhccccchHHHHHHHHHHHhhhhHHHHHHHHHHHHccCcchhhHH
Confidence 9999999999999999999999999999999999999999999999999999999999999987654
|
|
| >KOG1173 consensus Anaphase-promoting complex (APC), Cdc16 subunit [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=99.95 E-value=2.3e-24 Score=188.88 Aligned_cols=429 Identities=14% Similarity=0.105 Sum_probs=314.0
Q ss_pred hhhHHHHHHHHHHHHhcCCCCcchhhhcccchhhhhcChhhHHHHHHHHHHhCCCChhHHHHHHHHHHHhCChhHHHHHH
Q 012143 19 GKCRSRISSKMDSALEFGVDADGDQSGLGTSSSSREEKVSSLKTGLVHVARKMPKNAHAHFLLGLMYQRLGQPLKAVSSY 98 (470)
Q Consensus 19 g~~~~a~~~~~~~~l~~~p~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~ 98 (470)
-++..|. -.-++...+. .++..-+.++++ +.-.+++.+|...++.- .+...+....+..+.++....++++|...+
T Consensus 30 ~~y~~a~-f~adkV~~l~-~dp~d~~~~aq~-l~~~~~y~ra~~lit~~-~le~~d~~cryL~~~~l~~lk~~~~al~vl 105 (611)
T KOG1173|consen 30 HRYKTAL-FWADKVAGLT-NDPADIYWLAQV-LYLGRQYERAAHLITTY-KLEKRDIACRYLAAKCLVKLKEWDQALLVL 105 (611)
T ss_pred HhhhHHH-HHHHHHHhcc-CChHHHHHHHHH-HHhhhHHHHHHHHHHHh-hhhhhhHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 3444444 3444554444 566677889999 99999999998888765 566778889999999999999999999998
Q ss_pred HHH------HHHHhhhhcccchhhh-HHHHHHhhhccccccccCCCccccccCcccHHHHHHHHHHhhhcCccchHHHHH
Q 012143 99 EKA------EEILLRCEADIARPEL-LSLVQIHHAQCLLPESSGDNSLDKELEPEELEEILSKLKESMQSDTRQAVVWNT 171 (470)
Q Consensus 99 ~~a------l~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~ 171 (470)
.+. +.-.|.+.......+. ..... ....+.+....|.. +....++++|...|.+++..++.+.++...
T Consensus 106 ~~~~~~~~~f~yy~~~~~~~l~~n~~~~~~~-~~~essic~lRgk~----y~al~n~~~ar~~Y~~Al~~D~~c~Ea~~~ 180 (611)
T KOG1173|consen 106 GRGHVETNPFSYYEKDAANTLELNSAGEDLM-INLESSICYLRGKV----YVALDNREEARDKYKEALLADAKCFEAFEK 180 (611)
T ss_pred cccchhhcchhhcchhhhceeccCccccccc-ccchhceeeeeeeh----hhhhccHHHHHHHHHHHHhcchhhHHHHHH
Confidence 844 1111111000000000 00000 01112222333443 667777899999999999999888776655
Q ss_pred HHHHHHHcC-----------------ChHHHHHHHHHHh----------hcCC--------CChHHHHHHHHHHHHcCCH
Q 012143 172 LGLILLKSG-----------------RLQSSISVLSSLL----------AVDP--------NNCDCIGNLGIAYFQSGDM 216 (470)
Q Consensus 172 l~~~~~~~~-----------------~~~~A~~~~~~a~----------~~~~--------~~~~~~~~la~~~~~~g~~ 216 (470)
+-...+-.- ...+=++.+-++. ...| ++++.....+..++..+++
T Consensus 181 lvs~~mlt~~Ee~~ll~~l~~a~~~~ed~e~l~~lyel~~~k~~n~~~~~r~~~~sl~~l~~~~dll~~~ad~~y~~c~f 260 (611)
T KOG1173|consen 181 LVSAHMLTAQEEFELLESLDLAMLTKEDVERLEILYELKLCKNRNEESLTRNEDESLIGLAENLDLLAEKADRLYYGCRF 260 (611)
T ss_pred HHHHHhcchhHHHHHHhcccHHhhhhhHHHHHHHHHHhhhhhhccccccccCchhhhhhhhhcHHHHHHHHHHHHHcChH
Confidence 543332221 1111111111111 0122 3567888889999999999
Q ss_pred HHHHHHHHHHHhhCCCChHHHHHHHHHHHhhhcc-------------cccccccchhhhhHHHhcCCHHHHHHHHHHHHh
Q 012143 217 EQSAKCFQDLILKDQNHPAALINYAALLLCKYGS-------------VLAGAGANTGEGACLDQASAVNVAKECLLAALK 283 (470)
Q Consensus 217 ~~A~~~~~~~l~~~p~~~~~~~~l~~~~~~~~~~-------------~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~ 283 (470)
.+..+..+..++.+|-+...+-....++....+. ....+-.|+..|..|...|++.+|..+|.++..
T Consensus 261 ~~c~kit~~lle~dpfh~~~~~~~ia~l~el~~~n~Lf~lsh~LV~~yP~~a~sW~aVg~YYl~i~k~seARry~SKat~ 340 (611)
T KOG1173|consen 261 KECLKITEELLEKDPFHLPCLPLHIACLYELGKSNKLFLLSHKLVDLYPSKALSWFAVGCYYLMIGKYSEARRYFSKATT 340 (611)
T ss_pred HHHHHHhHHHHhhCCCCcchHHHHHHHHHHhcccchHHHHHHHHHHhCCCCCcchhhHHHHHHHhcCcHHHHHHHHHHhh
Confidence 9999999999999998877654333344332211 222577889999999999999999999999999
Q ss_pred cCCCCHHHHHHHHHHHHHcCChhHHHHHHHHHHhcCCCcccHHHHHHHHHHHHhhhccCchHHhhhhHHHHHHHhhcCCC
Q 012143 284 ADPKAAHIWANLANAYYLTGDHRSSGKCLEKAAKLEPNCMSTRYAVAVSRIKDAERSQEPTEQLSWAGNEMASILREGDP 363 (470)
Q Consensus 284 ~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~p~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 363 (470)
++|....+|...|..+...|..++|+.+|..|-++.|........+++....- ...+-....+.....
T Consensus 341 lD~~fgpaWl~fghsfa~e~EhdQAmaaY~tAarl~~G~hlP~LYlgmey~~t------------~n~kLAe~Ff~~A~a 408 (611)
T KOG1173|consen 341 LDPTFGPAWLAFGHSFAGEGEHDQAMAAYFTAARLMPGCHLPSLYLGMEYMRT------------NNLKLAEKFFKQALA 408 (611)
T ss_pred cCccccHHHHHHhHHhhhcchHHHHHHHHHHHHHhccCCcchHHHHHHHHHHh------------ccHHHHHHHHHHHHh
Confidence 99999999999999999999999999999999999999888777776643321 112223455666777
Q ss_pred CCCCcHHHHHHHHHHHhccccHHHHHHHHHHHhcchh---------hhhHhhHHHHHHHhccHHHHHHHHHHHHhcCCCc
Q 012143 364 VQIEPPIAWAGFAAVQKTHHEVAAAFETEENELSKME---------ECAGAGESAFLDQASAVNVAKECLLAALKADPKA 434 (470)
Q Consensus 364 ~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~---------~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~p~~ 434 (470)
+.|.+|.+...+|.+....+.+.+|...|+..+.+.. ...+.++|.++.+.+++++|+.+|++++.+.|.+
T Consensus 409 i~P~Dplv~~Elgvvay~~~~y~~A~~~f~~~l~~ik~~~~e~~~w~p~~~NLGH~~Rkl~~~~eAI~~~q~aL~l~~k~ 488 (611)
T KOG1173|consen 409 IAPSDPLVLHELGVVAYTYEEYPEALKYFQKALEVIKSVLNEKIFWEPTLNNLGHAYRKLNKYEEAIDYYQKALLLSPKD 488 (611)
T ss_pred cCCCcchhhhhhhheeehHhhhHHHHHHHHHHHHHhhhccccccchhHHHHhHHHHHHHHhhHHHHHHHHHHHHHcCCCc
Confidence 7889999999999999999999999999999773221 2337799999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHcCChHHHHHHHHHHHHhhccC
Q 012143 435 AHIWANLANAYYLTGDHRSSGKCLEKVLMVYCSS 468 (470)
Q Consensus 435 ~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~ 468 (470)
+.++..+|.+|..+|+++.|+++|.|++-+-|..
T Consensus 489 ~~~~asig~iy~llgnld~Aid~fhKaL~l~p~n 522 (611)
T KOG1173|consen 489 ASTHASIGYIYHLLGNLDKAIDHFHKALALKPDN 522 (611)
T ss_pred hhHHHHHHHHHHHhcChHHHHHHHHHHHhcCCcc
Confidence 9999999999999999999999999999887643
|
|
| >PRK14574 hmsH outer membrane protein; Provisional | Back alignment and domain information |
|---|
Probab=99.95 E-value=2.8e-23 Score=201.28 Aligned_cols=407 Identities=10% Similarity=-0.043 Sum_probs=266.0
Q ss_pred HHhcCCCCcchhhhcccchhhhhcChhhHHHHHHHHHHhCCCChhHHHHHHHHHHHhCChhHHHHHHHHHHHHHhhhhcc
Q 012143 32 ALEFGVDADGDQSGLGTSSSSREEKVSSLKTGLVHVARKMPKNAHAHFLLGLMYQRLGQPLKAVSSYEKAEEILLRCEAD 111 (470)
Q Consensus 32 ~l~~~p~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~ 111 (470)
.+-..|..+...+..+.+ ..+.|++..|...|+++++.+|.++.+...+..++...|+.++|+.++++++ +|.+...
T Consensus 26 ~~~~~p~~~~~~y~~aii-~~r~Gd~~~Al~~L~qaL~~~P~~~~av~dll~l~~~~G~~~~A~~~~eka~--~p~n~~~ 102 (822)
T PRK14574 26 GFVVNPAMADTQYDSLII-RARAGDTAPVLDYLQEESKAGPLQSGQVDDWLQIAGWAGRDQEVIDVYERYQ--SSMNISS 102 (822)
T ss_pred ccccCccchhHHHHHHHH-HHhCCCHHHHHHHHHHHHhhCccchhhHHHHHHHHHHcCCcHHHHHHHHHhc--cCCCCCH
Confidence 344556666666677776 7777777777777777777777765443366666666677777777777766 2222110
Q ss_pred cchhhhHHHHHHhhhccccccccCCCccccccCcccHHHHHHHHHHhhhcCccchHHHHHHHHHHHHcCChHHHHHHHHH
Q 012143 112 IARPELLSLVQIHHAQCLLPESSGDNSLDKELEPEELEEILSKLKESMQSDTRQAVVWNTLGLILLKSGRLQSSISVLSS 191 (470)
Q Consensus 112 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~ 191 (470)
.. ...++.+ +...|++++|++.|+++++.+|+++.++..++.++...++.++|+..+++
T Consensus 103 ---~~-------llalA~l-----------y~~~gdyd~Aiely~kaL~~dP~n~~~l~gLa~~y~~~~q~~eAl~~l~~ 161 (822)
T PRK14574 103 ---RG-------LASAARA-----------YRNEKRWDQALALWQSSLKKDPTNPDLISGMIMTQADAGRGGVVLKQATE 161 (822)
T ss_pred ---HH-------HHHHHHH-----------HHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHhhcCCHHHHHHHHHH
Confidence 00 0111111 23446667777777777777777777776666777777777777777777
Q ss_pred HhhcCCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCChHHHHHHHHHHHhhhccccc------------------
Q 012143 192 LLAVDPNNCDCIGNLGIAYFQSGDMEQSAKCFQDLILKDQNHPAALINYAALLLCKYGSVLA------------------ 253 (470)
Q Consensus 192 a~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~l~~~~~~~~~~~~~------------------ 253 (470)
+...+|.+... ..++.++...++..+|++.++++++.+|++...+..+..++........+
T Consensus 162 l~~~dp~~~~~-l~layL~~~~~~~~~AL~~~ekll~~~P~n~e~~~~~~~~l~~~~~~~~a~~l~~~~p~~f~~~~~~~ 240 (822)
T PRK14574 162 LAERDPTVQNY-MTLSYLNRATDRNYDALQASSEAVRLAPTSEEVLKNHLEILQRNRIVEPALRLAKENPNLVSAEHYRQ 240 (822)
T ss_pred hcccCcchHHH-HHHHHHHHhcchHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCcHHHHHHHHhCccccCHHHHHH
Confidence 77776664443 44455555556665577777777777777766665555544432111000
Q ss_pred --------------------------------c-----------cc--cc-----hhhhhHHHhcCCHHHHHHHHHHHHh
Q 012143 254 --------------------------------G-----------AG--AN-----TGEGACLDQASAVNVAKECLLAALK 283 (470)
Q Consensus 254 --------------------------------~-----------~~--~~-----~~~~~~~~~~~~~~~A~~~~~~~~~ 283 (470)
. +. .. ...-..+...|++.++++.|+....
T Consensus 241 l~~~~~a~~vr~a~~~~~~~~~r~~~~d~ala~~~~l~~~~~~~p~~~~~~~~~~~Drl~aL~~r~r~~~vi~~y~~l~~ 320 (822)
T PRK14574 241 LERDAAAEQVRMAVLPTRSETERFDIADKALADYQNLLTRWGKDPEAQADYQRARIDRLGALLVRHQTADLIKEYEAMEA 320 (822)
T ss_pred HHHHHHHHHHhhcccccccchhhHHHHHHHHHHHHHHHhhccCCCccchHHHHHHHHHHHHHHHhhhHHHHHHHHHHhhh
Confidence 0 00 00 0112345567888999999988775
Q ss_pred cC-CCCHHHHHHHHHHHHHcCChhHHHHHHHHHHhcCCCc----ccH--HHHHHHHHHHHhhhccCchHHhhhhHHHHHH
Q 012143 284 AD-PKAAHIWANLANAYYLTGDHRSSGKCLEKAAKLEPNC----MST--RYAVAVSRIKDAERSQEPTEQLSWAGNEMAS 356 (470)
Q Consensus 284 ~~-p~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~p~~----~~~--~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~ 356 (470)
.. |--..+....|..|...+++++|...|+.++...|.. ... ...+....+. .+..+........+..
T Consensus 321 ~~~~~P~y~~~a~adayl~~~~P~kA~~l~~~~~~~~~~~~~~~~~~~~~~~L~yA~ld-----~e~~~~A~~~l~~~~~ 395 (822)
T PRK14574 321 EGYKMPDYARRWAASAYIDRRLPEKAAPILSSLYYSDGKTFRNSDDLLDADDLYYSLNE-----SEQLDKAYQFAVNYSE 395 (822)
T ss_pred cCCCCCHHHHHHHHHHHHhcCCcHHHHHHHHHHhhccccccCCCcchHHHHHHHHHHHh-----cccHHHHHHHHHHHHh
Confidence 54 3345677888999999999999999999998866421 111 1222222221 1111122222222222
Q ss_pred Hhh--------cCCCCCCCcHHHHHHHHHHHhccccHHHHHHHHHHHhc--chhhhhHhhHHHHHHHhccHHHHHHHHHH
Q 012143 357 ILR--------EGDPVQIEPPIAWAGFAAVQKTHHEVAAAFETEENELS--KMEECAGAGESAFLDQASAVNVAKECLLA 426 (470)
Q Consensus 357 ~~~--------~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~--~~~~~~~~~l~~~~~~~~~~~~A~~~~~~ 426 (470)
..+ ......++-......++.++...|++.+|.+.++..+. |.+...+..+|.++...|.+.+|...++.
T Consensus 396 ~~p~~~~~~~~~~~~pn~d~~~~~~l~a~~~~~~gdl~~Ae~~le~l~~~aP~n~~l~~~~A~v~~~Rg~p~~A~~~~k~ 475 (822)
T PRK14574 396 QTPYQVGVYGLPGKEPNDDWIEGQTLLVQSLVALNDLPTAQKKLEDLSSTAPANQNLRIALASIYLARDLPRKAEQELKA 475 (822)
T ss_pred cCCcEEeccCCCCCCCCccHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhcCCHHHHHHHHHH
Confidence 111 01122345566778889999999999999999999555 66777788999999999999999999999
Q ss_pred HHhcCCCcHHHHHHHHHHHHHcCChHHHHHHHHHHHHhhccC
Q 012143 427 ALKADPKAAHIWANLANAYYLTGDHRSSGKCLEKVLMVYCSS 468 (470)
Q Consensus 427 al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~ 468 (470)
+..++|++..+...+|.++..+|++++|....+++++.+|.+
T Consensus 476 a~~l~P~~~~~~~~~~~~al~l~e~~~A~~~~~~l~~~~Pe~ 517 (822)
T PRK14574 476 VESLAPRSLILERAQAETAMALQEWHQMELLTDDVISRSPED 517 (822)
T ss_pred HhhhCCccHHHHHHHHHHHHhhhhHHHHHHHHHHHHhhCCCc
Confidence 999999999999999999999999999999999999998864
|
|
| >PRK11788 tetratricopeptide repeat protein; Provisional | Back alignment and domain information |
|---|
Probab=99.94 E-value=1.4e-24 Score=200.82 Aligned_cols=276 Identities=14% Similarity=0.061 Sum_probs=233.2
Q ss_pred cchhhhhhhhhhhhhhhhHHHHHHHHHHHHhcCCCCcchhhhcccchhhhhcChhhHHHHHHHHHHhCCCC----hhHHH
Q 012143 4 EMDVAEVEGKKINKLGKCRSRISSKMDSALEFGVDADGDQSGLGTSSSSREEKVSSLKTGLVHVARKMPKN----AHAHF 79 (470)
Q Consensus 4 ~~~~~~~~~~~~~~~g~~~~a~~~~~~~~l~~~p~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~p~~----~~~~~ 79 (470)
+.+.....|..+...|++++|+ ..+.++++.+|++...+..+|.. +...|++++|...+++++...+.. ..++.
T Consensus 34 ~~~~~y~~g~~~~~~~~~~~A~-~~~~~al~~~p~~~~~~~~la~~-~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~~~~ 111 (389)
T PRK11788 34 RLSRDYFKGLNFLLNEQPDKAI-DLFIEMLKVDPETVELHLALGNL-FRRRGEVDRAIRIHQNLLSRPDLTREQRLLALQ 111 (389)
T ss_pred hccHHHHHHHHHHhcCChHHHH-HHHHHHHhcCcccHHHHHHHHHH-HHHcCcHHHHHHHHHHHhcCCCCCHHHHHHHHH
Confidence 3344445677788889999999 99999999999999999999999 999999999999999998754332 35788
Q ss_pred HHHHHHHHhCChhHHHHHHHHHHHHHhhhhcccchhhhHHHHHHhhhccccccccCCCccccccCcccHHHHHHHHHHhh
Q 012143 80 LLGLMYQRLGQPLKAVSSYEKAEEILLRCEADIARPELLSLVQIHHAQCLLPESSGDNSLDKELEPEELEEILSKLKESM 159 (470)
Q Consensus 80 ~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~ 159 (470)
.+|.+|...|++++|+..|+++++..|... .++..++.+ +...|++++|+..+++++
T Consensus 112 ~La~~~~~~g~~~~A~~~~~~~l~~~~~~~------------~~~~~la~~-----------~~~~g~~~~A~~~~~~~~ 168 (389)
T PRK11788 112 ELGQDYLKAGLLDRAEELFLQLVDEGDFAE------------GALQQLLEI-----------YQQEKDWQKAIDVAERLE 168 (389)
T ss_pred HHHHHHHHCCCHHHHHHHHHHHHcCCcchH------------HHHHHHHHH-----------HHHhchHHHHHHHHHHHH
Confidence 999999999999999999999998644321 122223332 346788899999999999
Q ss_pred hcCccch-----HHHHHHHHHHHHcCChHHHHHHHHHHhhcCCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCh
Q 012143 160 QSDTRQA-----VVWNTLGLILLKSGRLQSSISVLSSLLAVDPNNCDCIGNLGIAYFQSGDMEQSAKCFQDLILKDQNHP 234 (470)
Q Consensus 160 ~~~p~~~-----~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~ 234 (470)
...|.+. ..+..+|.++...|++++|+..|+++++.+|++..++..+|.++...|++++|++.+++++..+|.+.
T Consensus 169 ~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~p~~~ 248 (389)
T PRK11788 169 KLGGDSLRVEIAHFYCELAQQALARGDLDAARALLKKALAADPQCVRASILLGDLALAQGDYAAAIEALERVEEQDPEYL 248 (389)
T ss_pred HhcCCcchHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHhHCcCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHChhhH
Confidence 9887653 35668999999999999999999999999999999999999999999999999999999999888763
Q ss_pred -HHHHHHHHHHHhhhcccccccccchhhhhHHHhcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCChhHHHHHHH
Q 012143 235 -AALINYAALLLCKYGSVLAGAGANTGEGACLDQASAVNVAKECLLAALKADPKAAHIWANLANAYYLTGDHRSSGKCLE 313 (470)
Q Consensus 235 -~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~ 313 (470)
..+..++.++. ..|++++|+..++++++..|+... +..++.++...|++++|+..++
T Consensus 249 ~~~~~~l~~~~~---------------------~~g~~~~A~~~l~~~~~~~p~~~~-~~~la~~~~~~g~~~~A~~~l~ 306 (389)
T PRK11788 249 SEVLPKLMECYQ---------------------ALGDEAEGLEFLRRALEEYPGADL-LLALAQLLEEQEGPEAAQALLR 306 (389)
T ss_pred HHHHHHHHHHHH---------------------HcCCHHHHHHHHHHHHHhCCCchH-HHHHHHHHHHhCCHHHHHHHHH
Confidence 34555555555 799999999999999999998654 4899999999999999999999
Q ss_pred HHHhcCCCcccHH
Q 012143 314 KAAKLEPNCMSTR 326 (470)
Q Consensus 314 ~a~~~~p~~~~~~ 326 (470)
++++..|++....
T Consensus 307 ~~l~~~P~~~~~~ 319 (389)
T PRK11788 307 EQLRRHPSLRGFH 319 (389)
T ss_pred HHHHhCcCHHHHH
Confidence 9999999976544
|
|
| >KOG1155 consensus Anaphase-promoting complex (APC), Cdc23 subunit [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=99.94 E-value=2.9e-23 Score=177.63 Aligned_cols=318 Identities=15% Similarity=0.134 Sum_probs=261.2
Q ss_pred CCChhHHHHHHHHHHHhCChhHHHHHHHHHHHHHhhhhcccchhhhHHHHHHhhhccccccccCCCccccccCcccHHHH
Q 012143 72 PKNAHAHFLLGLMYQRLGQPLKAVSSYEKAEEILLRCEADIARPELLSLVQIHHAQCLLPESSGDNSLDKELEPEELEEI 151 (470)
Q Consensus 72 p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A 151 (470)
..++..++..|.++.+.|....|+..|..++...|- ++ .+|..++. .-.-
T Consensus 161 ~~D~fllYL~Gvv~k~~~~~s~A~~sfv~~v~~~P~---------~W---~AWleL~~------------------lit~ 210 (559)
T KOG1155|consen 161 EKDEFLLYLYGVVLKELGLLSLAIDSFVEVVNRYPW---------FW---SAWLELSE------------------LITD 210 (559)
T ss_pred cchhHHHHHHHHHHHhhchHHHHHHHHHHHHhcCCc---------ch---HHHHHHHH------------------hhch
Confidence 456778899999999999999999999999876432 22 22322222 2233
Q ss_pred HHHHHHhhhcCc--cchHHHHHHHHHHHHcCChHHHHHHHHHHhhc-CCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHh
Q 012143 152 LSKLKESMQSDT--RQAVVWNTLGLILLKSGRLQSSISVLSSLLAV-DPNNCDCIGNLGIAYFQSGDMEQSAKCFQDLIL 228 (470)
Q Consensus 152 ~~~~~~~~~~~p--~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~-~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~ 228 (470)
+.........-| .+.-.-+.++.++....+.++++.-++..... -|.++-.-...|.+...+.++++|+..|+...+
T Consensus 211 ~e~~~~l~~~l~~~~h~M~~~F~~~a~~el~q~~e~~~k~e~l~~~gf~~~~~i~~~~A~~~y~~rDfD~a~s~Feei~k 290 (559)
T KOG1155|consen 211 IEILSILVVGLPSDMHWMKKFFLKKAYQELHQHEEALQKKERLSSVGFPNSMYIKTQIAAASYNQRDFDQAESVFEEIRK 290 (559)
T ss_pred HHHHHHHHhcCcccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCccHHHHHHHHHHHhhhhhHHHHHHHHHHHHh
Confidence 344444444444 33344456788888888999999999998888 888888999999999999999999999999999
Q ss_pred hCCCChHHHHHHHHHHHhhhcccc-c------------ccccchhhhhHHHhcCCHHHHHHHHHHHHhcCCCCHHHHHHH
Q 012143 229 KDQNHPAALINYAALLLCKYGSVL-A------------GAGANTGEGACLDQASAVNVAKECLLAALKADPKAAHIWANL 295 (470)
Q Consensus 229 ~~p~~~~~~~~l~~~~~~~~~~~~-~------------~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~l 295 (470)
.+|-..+-...+..++..+.+... . .++..-.+|..|.-.++.++|+.+|+++++++|....+|..+
T Consensus 291 nDPYRl~dmdlySN~LYv~~~~skLs~LA~~v~~idKyR~ETCCiIaNYYSlr~eHEKAv~YFkRALkLNp~~~~aWTLm 370 (559)
T KOG1155|consen 291 NDPYRLDDMDLYSNVLYVKNDKSKLSYLAQNVSNIDKYRPETCCIIANYYSLRSEHEKAVMYFKRALKLNPKYLSAWTLM 370 (559)
T ss_pred cCCCcchhHHHHhHHHHHHhhhHHHHHHHHHHHHhccCCccceeeehhHHHHHHhHHHHHHHHHHHHhcCcchhHHHHHh
Confidence 999776666666666554433211 1 245555689999999999999999999999999999999999
Q ss_pred HHHHHHcCChhHHHHHHHHHHhcCCCcccHHHHHHHHHHHHhhhccCchHHhhhhHHHHHHHhhcCCCCCCCcHHHHHHH
Q 012143 296 ANAYYLTGDHRSSGKCLEKAAKLEPNCMSTRYAVAVSRIKDAERSQEPTEQLSWAGNEMASILREGDPVQIEPPIAWAGF 375 (470)
Q Consensus 296 a~~~~~~g~~~~A~~~~~~a~~~~p~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l 375 (470)
|.-|..+++...|+..|++|++++|.+. .+|+.+
T Consensus 371 GHEyvEmKNt~AAi~sYRrAvdi~p~Dy----------------------------------------------RAWYGL 404 (559)
T KOG1155|consen 371 GHEYVEMKNTHAAIESYRRAVDINPRDY----------------------------------------------RAWYGL 404 (559)
T ss_pred hHHHHHhcccHHHHHHHHHHHhcCchhH----------------------------------------------HHHhhh
Confidence 9999999999999999999999999864 467777
Q ss_pred HHHHhccccHHHHHHHHHHH--hcchhhhhHhhHHHHHHHhccHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHcCChHH
Q 012143 376 AAVQKTHHEVAAAFETEENE--LSKMEECAGAGESAFLDQASAVNVAKECLLAALKADPKAAHIWANLANAYYLTGDHRS 453 (470)
Q Consensus 376 ~~~~~~~~~~~~A~~~~~~~--~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~ 453 (470)
|+.|.-++...=|+-.|+++ +.|.+...|..+|.||.+.++.++|+.+|.+++.....+..++..||.+|..+++.++
T Consensus 405 GQaYeim~Mh~YaLyYfqkA~~~kPnDsRlw~aLG~CY~kl~~~~eAiKCykrai~~~dte~~~l~~LakLye~l~d~~e 484 (559)
T KOG1155|consen 405 GQAYEIMKMHFYALYYFQKALELKPNDSRLWVALGECYEKLNRLEEAIKCYKRAILLGDTEGSALVRLAKLYEELKDLNE 484 (559)
T ss_pred hHHHHHhcchHHHHHHHHHHHhcCCCchHHHHHHHHHHHHhccHHHHHHHHHHHHhccccchHHHHHHHHHHHHHHhHHH
Confidence 88888888888888888884 5588899999999999999999999999999999988889999999999999999999
Q ss_pred HHHHHHHHHHhh
Q 012143 454 SGKCLEKVLMVY 465 (470)
Q Consensus 454 A~~~~~~al~~~ 465 (470)
|..+|++.++..
T Consensus 485 Aa~~yek~v~~~ 496 (559)
T KOG1155|consen 485 AAQYYEKYVEVS 496 (559)
T ss_pred HHHHHHHHHHHH
Confidence 999999999865
|
|
| >KOG2076 consensus RNA polymerase III transcription factor TFIIIC [Transcription] | Back alignment and domain information |
|---|
Probab=99.94 E-value=1.5e-23 Score=193.44 Aligned_cols=343 Identities=15% Similarity=0.123 Sum_probs=253.2
Q ss_pred hhhhcccchhhhhcChhhHHHHHHHHHHhCCCChhHHHHHHHHHHHhCChhHHHHHHHHHHHHHhhhhcccchhhhHHHH
Q 012143 42 DQSGLGTSSSSREEKVSSLKTGLVHVARKMPKNAHAHFLLGLMYQRLGQPLKAVSSYEKAEEILLRCEADIARPELLSLV 121 (470)
Q Consensus 42 ~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~ 121 (470)
.....+.. +...|++++|...+.++++.+|.++.+|+.||.+|.++|+.+++...+-.|-.
T Consensus 141 ~ll~eAN~-lfarg~~eeA~~i~~EvIkqdp~~~~ay~tL~~IyEqrGd~eK~l~~~llAAH------------------ 201 (895)
T KOG2076|consen 141 QLLGEANN-LFARGDLEEAEEILMEVIKQDPRNPIAYYTLGEIYEQRGDIEKALNFWLLAAH------------------ 201 (895)
T ss_pred HHHHHHHH-HHHhCCHHHHHHHHHHHHHhCccchhhHHHHHHHHHHcccHHHHHHHHHHHHh------------------
Confidence 34455555 66668888888888888888888888888888888888877777766655544
Q ss_pred HHhhhccccccccCCCccccccCcccHHHHHHHHHHhhhcCccchHHHHHHHHHHHHcCChHHHHHHHHHHhhcCCCChH
Q 012143 122 QIHHAQCLLPESSGDNSLDKELEPEELEEILSKLKESMQSDTRQAVVWNTLGLILLKSGRLQSSISVLSSLLAVDPNNCD 201 (470)
Q Consensus 122 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~ 201 (470)
++|.+.+.|..++....++|++.+|.-+|.++++.+|.+..
T Consensus 202 ---------------------------------------L~p~d~e~W~~ladls~~~~~i~qA~~cy~rAI~~~p~n~~ 242 (895)
T KOG2076|consen 202 ---------------------------------------LNPKDYELWKRLADLSEQLGNINQARYCYSRAIQANPSNWE 242 (895)
T ss_pred ---------------------------------------cCCCChHHHHHHHHHHHhcccHHHHHHHHHHHHhcCCcchH
Confidence 36778899999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCChHHHHHHHHHHHhhhcccccccccchhhhhHHHhcCCHHHHHHHHHHH
Q 012143 202 CIGNLGIAYFQSGDMEQSAKCFQDLILKDQNHPAALINYAALLLCKYGSVLAGAGANTGEGACLDQASAVNVAKECLLAA 281 (470)
Q Consensus 202 ~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~ 281 (470)
.....+.+|.++|+...|...|.+++...|... .-.....+.. .+..+...++-+.|++.++.+
T Consensus 243 ~~~ers~L~~~~G~~~~Am~~f~~l~~~~p~~d-~er~~d~i~~---------------~~~~~~~~~~~e~a~~~le~~ 306 (895)
T KOG2076|consen 243 LIYERSSLYQKTGDLKRAMETFLQLLQLDPPVD-IERIEDLIRR---------------VAHYFITHNERERAAKALEGA 306 (895)
T ss_pred HHHHHHHHHHHhChHHHHHHHHHHHHhhCCchh-HHHHHHHHHH---------------HHHHHHHhhHHHHHHHHHHHH
Confidence 999999999999999999999999999998322 1111222221 234445677779999999999
Q ss_pred HhcCC--CCHHHHHHHHHHHHHcCChhHHHHHHHHHHhcC--CCcccH--------------------HHHHHHHHHHHh
Q 012143 282 LKADP--KAAHIWANLANAYYLTGDHRSSGKCLEKAAKLE--PNCMST--------------------RYAVAVSRIKDA 337 (470)
Q Consensus 282 ~~~~p--~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~--p~~~~~--------------------~~~l~~~~~~~~ 337 (470)
+.... ...+.+..++.++.....++.|........... +++... -+.+-..++.-.
T Consensus 307 ~s~~~~~~~~ed~ni~ael~l~~~q~d~~~~~i~~~~~r~~e~d~~e~~~~~~~~~~~~~~~~~~~~~s~~l~v~rl~ic 386 (895)
T KOG2076|consen 307 LSKEKDEASLEDLNILAELFLKNKQSDKALMKIVDDRNRESEKDDSEWDTDERRREEPNALCEVGKELSYDLRVIRLMIC 386 (895)
T ss_pred HhhccccccccHHHHHHHHHHHhHHHHHhhHHHHHHhccccCCChhhhhhhhhccccccccccCCCCCCccchhHhHhhh
Confidence 98432 345667788999999999999988877665511 111000 000000011000
Q ss_pred hhccCchHHhhhhHHHHHHHhhcCCCCCCCcHHHHHHHHHHHhccccHHHHHHHHHHHhcchh---hhhHhhHHHHHHHh
Q 012143 338 ERSQEPTEQLSWAGNEMASILREGDPVQIEPPIAWAGFAAVQKTHHEVAAAFETEENELSKME---ECAGAGESAFLDQA 414 (470)
Q Consensus 338 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~---~~~~~~l~~~~~~~ 414 (470)
.-..+.. .....+...+........+.+..+..++..+...|++.+|+..+....+... ...|+.+|.||...
T Consensus 387 L~~L~~~----e~~e~ll~~l~~~n~~~~d~~dL~~d~a~al~~~~~~~~Al~~l~~i~~~~~~~~~~vw~~~a~c~~~l 462 (895)
T KOG2076|consen 387 LVHLKER----ELLEALLHFLVEDNVWVSDDVDLYLDLADALTNIGKYKEALRLLSPITNREGYQNAFVWYKLARCYMEL 462 (895)
T ss_pred hhccccc----chHHHHHHHHHHhcCChhhhHHHHHHHHHHHHhcccHHHHHHHHHHHhcCccccchhhhHHHHHHHHHH
Confidence 0000000 1112222333333333446778999999999999999999999998666332 34799999999999
Q ss_pred ccHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHcCChHHHHHHHHHHH
Q 012143 415 SAVNVAKECLLAALKADPKAAHIWANLANAYYLTGDHRSSGKCLEKVL 462 (470)
Q Consensus 415 ~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al 462 (470)
|.+++|+.+|++++...|++.++...|+.++.++|+.++|.+.++...
T Consensus 463 ~e~e~A~e~y~kvl~~~p~~~D~Ri~Lasl~~~~g~~EkalEtL~~~~ 510 (895)
T KOG2076|consen 463 GEYEEAIEFYEKVLILAPDNLDARITLASLYQQLGNHEKALETLEQII 510 (895)
T ss_pred hhHHHHHHHHHHHHhcCCCchhhhhhHHHHHHhcCCHHHHHHHHhccc
Confidence 999999999999999999999999999999999999999999887644
|
|
| >KOG0547 consensus Translocase of outer mitochondrial membrane complex, subunit TOM70/TOM72 [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=99.94 E-value=3.5e-24 Score=184.37 Aligned_cols=348 Identities=15% Similarity=0.076 Sum_probs=255.9
Q ss_pred hhhhcccchhhhhcChhhHHHHHHHHHHhCCCChhHHHHHHHHHHHhCChhHHHHHHHHHHHHHhhhhcccchhhhHHHH
Q 012143 42 DQSGLGTSSSSREEKVSSLKTGLVHVARKMPKNAHAHFLLGLMYQRLGQPLKAVSSYEKAEEILLRCEADIARPELLSLV 121 (470)
Q Consensus 42 ~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~ 121 (470)
.+-..|.- ++..|+|++|+++|..++++.|+.+..+-+++-||...|++++-++.-.++++++|+..
T Consensus 117 ~lK~~GN~-~f~~kkY~eAIkyY~~AI~l~p~epiFYsNraAcY~~lgd~~~Vied~TkALEl~P~Y~------------ 183 (606)
T KOG0547|consen 117 ALKTKGNK-FFRNKKYDEAIKYYTQAIELCPDEPIFYSNRAACYESLGDWEKVIEDCTKALELNPDYV------------ 183 (606)
T ss_pred HHHhhhhh-hhhcccHHHHHHHHHHHHhcCCCCchhhhhHHHHHHHHhhHHHHHHHHHHHhhcCcHHH------------
Confidence 34567888 99999999999999999999999999999999999999999999999999999987642
Q ss_pred HHhhhccccccccCCC-----ccccccCcccH--------------HHHHHHHHHhhh--cCccchH-------------
Q 012143 122 QIHHAQCLLPESSGDN-----SLDKELEPEEL--------------EEILSKLKESMQ--SDTRQAV------------- 167 (470)
Q Consensus 122 ~~~~~~~~~~~~~~~~-----~~~~~~~~~~~--------------~~A~~~~~~~~~--~~p~~~~------------- 167 (470)
.+++..+.++..+|+. .+....-.|.| ..|.....+-+. ..|.-|.
T Consensus 184 KAl~RRA~A~E~lg~~~eal~D~tv~ci~~~F~n~s~~~~~eR~Lkk~a~~ka~e~~k~nr~p~lPS~~fi~syf~sF~~ 263 (606)
T KOG0547|consen 184 KALLRRASAHEQLGKFDEALFDVTVLCILEGFQNASIEPMAERVLKKQAMKKAKEKLKENRPPVLPSATFIASYFGSFHA 263 (606)
T ss_pred HHHHHHHHHHHhhccHHHHHHhhhHHHHhhhcccchhHHHHHHHHHHHHHHHHHHhhcccCCCCCCcHHHHHHHHhhccc
Confidence 3333344333333332 00000000000 011111111122 1111111
Q ss_pred --------------HHHHHHHHHHHcC---ChHHHHHHHHHHhhcCC----CC---------hHHHHHHHHHHHHcCCHH
Q 012143 168 --------------VWNTLGLILLKSG---RLQSSISVLSSLLAVDP----NN---------CDCIGNLGIAYFQSGDME 217 (470)
Q Consensus 168 --------------~~~~l~~~~~~~~---~~~~A~~~~~~a~~~~~----~~---------~~~~~~la~~~~~~g~~~ 217 (470)
+-..-+.-....+ .|..|...+.+.....- .+ ..++...|..++-.|++-
T Consensus 264 ~~~~~~~~~~~ksDa~l~~~l~~l~~~~~e~Y~~a~~~~te~~~~~~~~~~~n~~d~~le~~A~al~~~gtF~fL~g~~~ 343 (606)
T KOG0547|consen 264 DPKPLFDNKSDKSDAALAEALEALEKGLEEGYLKAYDKATEECLGSESSLSVNEIDAELEYMAEALLLRGTFHFLKGDSL 343 (606)
T ss_pred cccccccCCCccchhhHHHHHHHHHhhCchhHHHHHHHHHHHhhhhhhhccccccchhHHHHHHHHHHhhhhhhhcCCch
Confidence 1111111112222 56667666666543311 11 567888999999999999
Q ss_pred HHHHHHHHHHhhCCCChHHHHHHHHHHHhhhcccccccccchhhhhHHHhcCCHHHHHHHHHHHHhcCCCCHHHHHHHHH
Q 012143 218 QSAKCFQDLILKDQNHPAALINYAALLLCKYGSVLAGAGANTGEGACLDQASAVNVAKECLLAALKADPKAAHIWANLAN 297 (470)
Q Consensus 218 ~A~~~~~~~l~~~p~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~la~ 297 (470)
.|.+.|+.++.++|.+...+..++.+|. ...+.++-...|.++..++|+++++|+..|+
T Consensus 344 ~a~~d~~~~I~l~~~~~~lyI~~a~~y~---------------------d~~~~~~~~~~F~~A~~ldp~n~dvYyHRgQ 402 (606)
T KOG0547|consen 344 GAQEDFDAAIKLDPAFNSLYIKRAAAYA---------------------DENQSEKMWKDFNKAEDLDPENPDVYYHRGQ 402 (606)
T ss_pred hhhhhHHHHHhcCcccchHHHHHHHHHh---------------------hhhccHHHHHHHHHHHhcCCCCCchhHhHHH
Confidence 9999999999999999988888888887 6888899999999999999999999999999
Q ss_pred HHHHcCChhHHHHHHHHHHhcCCCcccHHHHHHHHHHHHhhhccCchHHhhhhHHHHHHHhhcCCCCCCCcHHHHHHHHH
Q 012143 298 AYYLTGDHRSSGKCLEKAAKLEPNCMSTRYAVAVSRIKDAERSQEPTEQLSWAGNEMASILREGDPVQIEPPIAWAGFAA 377 (470)
Q Consensus 298 ~~~~~g~~~~A~~~~~~a~~~~p~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ 377 (470)
+++-++++++|+.-|++++.++|.+..++..++.
T Consensus 403 m~flL~q~e~A~aDF~Kai~L~pe~~~~~iQl~~---------------------------------------------- 436 (606)
T KOG0547|consen 403 MRFLLQQYEEAIADFQKAISLDPENAYAYIQLCC---------------------------------------------- 436 (606)
T ss_pred HHHHHHHHHHHHHHHHHHhhcChhhhHHHHHHHH----------------------------------------------
Confidence 9999999999999999999999998887775544
Q ss_pred HHhccccHHHHHHHHHHHhc--chhhhhHhhHHHHHHHhccHHHHHHHHHHHHhcCCC------cHHHHHHHHHHH-HHc
Q 012143 378 VQKTHHEVAAAFETEENELS--KMEECAGAGESAFLDQASAVNVAKECLLAALKADPK------AAHIWANLANAY-YLT 448 (470)
Q Consensus 378 ~~~~~~~~~~A~~~~~~~~~--~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~p~------~~~~~~~la~~~-~~~ 448 (470)
+..++++++++...|..... |..++.+...|.++...++|++|++.|.+++++.|. ++..+.+.|.+. .-.
T Consensus 437 a~Yr~~k~~~~m~~Fee~kkkFP~~~Evy~~fAeiLtDqqqFd~A~k~YD~ai~LE~~~~~~~v~~~plV~Ka~l~~qwk 516 (606)
T KOG0547|consen 437 ALYRQHKIAESMKTFEEAKKKFPNCPEVYNLFAEILTDQQQFDKAVKQYDKAIELEPREHLIIVNAAPLVHKALLVLQWK 516 (606)
T ss_pred HHHHHHHHHHHHHHHHHHHHhCCCCchHHHHHHHHHhhHHhHHHHHHHHHHHHhhccccccccccchhhhhhhHhhhchh
Confidence 33444567777777777555 555577778888999999999999999999999998 666666666654 335
Q ss_pred CChHHHHHHHHHHHHhhccCC
Q 012143 449 GDHRSSGKCLEKVLMVYCSSN 469 (470)
Q Consensus 449 g~~~~A~~~~~~al~~~~~~~ 469 (470)
+++..|+..+++|+++-|.++
T Consensus 517 ~d~~~a~~Ll~KA~e~Dpkce 537 (606)
T KOG0547|consen 517 EDINQAENLLRKAIELDPKCE 537 (606)
T ss_pred hhHHHHHHHHHHHHccCchHH
Confidence 999999999999999988764
|
|
| >KOG0495 consensus HAT repeat protein [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=99.93 E-value=6e-22 Score=176.53 Aligned_cols=432 Identities=13% Similarity=0.077 Sum_probs=343.0
Q ss_pred hhhhhHHHHHHHHHHHHhcCCCCcchhhhcccchhhhhcChhhHHHHHHHHHHhCCCChhHHHHHHHHHHHhCChhHHHH
Q 012143 17 KLGKCRSRISSKMDSALEFGVDADGDQSGLGTSSSSREEKVSSLKTGLVHVARKMPKNAHAHFLLGLMYQRLGQPLKAVS 96 (470)
Q Consensus 17 ~~g~~~~a~~~~~~~~l~~~p~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~l~~~~~~~g~~~~A~~ 96 (470)
++...+.+. -.+.+++++-|.+...|..++.. .-|+.|.+.+.++-+.-|.++.+|..-+.+--..|+.+.-..
T Consensus 388 elE~~~dar-ilL~rAveccp~s~dLwlAlarL-----etYenAkkvLNkaRe~iptd~~IWitaa~LEE~ngn~~mv~k 461 (913)
T KOG0495|consen 388 ELEEPEDAR-ILLERAVECCPQSMDLWLALARL-----ETYENAKKVLNKAREIIPTDREIWITAAKLEEANGNVDMVEK 461 (913)
T ss_pred hccChHHHH-HHHHHHHHhccchHHHHHHHHHH-----HHHHHHHHHHHHHHhhCCCChhHHHHHHHHHHhcCCHHHHHH
Confidence 344455555 68899999999999888877766 678899999999999999999999999999999999999999
Q ss_pred HHHHHHHHHhhhhcccchhhhHHHHHHhhhcc-------ccccc--cCCC----------ccccccCcccHHHHHHHHHH
Q 012143 97 SYEKAEEILLRCEADIARPELLSLVQIHHAQC-------LLPES--SGDN----------SLDKELEPEELEEILSKLKE 157 (470)
Q Consensus 97 ~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~-------~~~~~--~~~~----------~~~~~~~~~~~~~A~~~~~~ 157 (470)
...+++.....+...+.+..++..+..+..-+ .++.. +|.. ..+...+.+.++-|+.+|..
T Consensus 462 ii~rgl~~L~~ngv~i~rdqWl~eAe~~e~agsv~TcQAIi~avigigvEeed~~~tw~~da~~~~k~~~~~carAVya~ 541 (913)
T KOG0495|consen 462 IIDRGLSELQANGVEINRDQWLKEAEACEDAGSVITCQAIIRAVIGIGVEEEDRKSTWLDDAQSCEKRPAIECARAVYAH 541 (913)
T ss_pred HHHHHHHHHhhcceeecHHHHHHHHHHHhhcCChhhHHHHHHHHHhhccccchhHhHHhhhHHHHHhcchHHHHHHHHHH
Confidence 99998876555544444444444333322111 11111 1111 11234466778889999999
Q ss_pred hhhcCccchHHHHHHHHHHHHcCChHHHHHHHHHHhhcCCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCChHHH
Q 012143 158 SMQSDTRQAVVWNTLGLILLKSGRLQSSISVLSSLLAVDPNNCDCIGNLGIAYFQSGDMEQSAKCFQDLILKDQNHPAAL 237 (470)
Q Consensus 158 ~~~~~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~ 237 (470)
+++.+|....+|...+..-...|..++-...+++++...|.....|...+..+...|+...|...+.++++.+|++.+.|
T Consensus 542 alqvfp~k~slWlra~~~ek~hgt~Esl~Allqkav~~~pkae~lwlM~ake~w~agdv~~ar~il~~af~~~pnseeiw 621 (913)
T KOG0495|consen 542 ALQVFPCKKSLWLRAAMFEKSHGTRESLEALLQKAVEQCPKAEILWLMYAKEKWKAGDVPAARVILDQAFEANPNSEEIW 621 (913)
T ss_pred HHhhccchhHHHHHHHHHHHhcCcHHHHHHHHHHHHHhCCcchhHHHHHHHHHHhcCCcHHHHHHHHHHHHhCCCcHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999998888
Q ss_pred HHHHHHHHhhhc------------ccccccccchhhhhHHHhcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCh
Q 012143 238 INYAALLLCKYG------------SVLAGAGANTGEGACLDQASAVNVAKECLLAALKADPKAAHIWANLANAYYLTGDH 305 (470)
Q Consensus 238 ~~l~~~~~~~~~------------~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~la~~~~~~g~~ 305 (470)
..-..+.....+ ........++..+.+..-+++.++|+.+++++++..|+....|..+|+++..+++.
T Consensus 622 laavKle~en~e~eraR~llakar~~sgTeRv~mKs~~~er~ld~~eeA~rllEe~lk~fp~f~Kl~lmlGQi~e~~~~i 701 (913)
T KOG0495|consen 622 LAAVKLEFENDELERARDLLAKARSISGTERVWMKSANLERYLDNVEEALRLLEEALKSFPDFHKLWLMLGQIEEQMENI 701 (913)
T ss_pred HHHHHHhhccccHHHHHHHHHHHhccCCcchhhHHHhHHHHHhhhHHHHHHHHHHHHHhCCchHHHHHHHhHHHHHHHHH
Confidence 765554443211 11113455666777778899999999999999999999999999999999999999
Q ss_pred hHHHHHHHHHHhcCCCcccHHHHHHHHHHHHhhhccCchHHhhhhHHHHHHHhhcCCCCCCCcHHHHHHHHHHHhccccH
Q 012143 306 RSSGKCLEKAAKLEPNCMSTRYAVAVSRIKDAERSQEPTEQLSWAGNEMASILREGDPVQIEPPIAWAGFAAVQKTHHEV 385 (470)
Q Consensus 306 ~~A~~~~~~a~~~~p~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~ 385 (470)
+.|...|...++..|..+..|..++.. .+.. ......+..+..+....|.+...|.....+..+.|+.
T Consensus 702 e~aR~aY~~G~k~cP~~ipLWllLakl--eEk~----------~~~~rAR~ildrarlkNPk~~~lwle~Ir~ElR~gn~ 769 (913)
T KOG0495|consen 702 EMAREAYLQGTKKCPNSIPLWLLLAKL--EEKD----------GQLVRARSILDRARLKNPKNALLWLESIRMELRAGNK 769 (913)
T ss_pred HHHHHHHHhccccCCCCchHHHHHHHH--HHHh----------cchhhHHHHHHHHHhcCCCcchhHHHHHHHHHHcCCH
Confidence 999999999999999999988876542 2111 1122344555666666778888999999999999999
Q ss_pred HHHHHHHHHHhcch--------------------------------hhhhHhhHHHHHHHhccHHHHHHHHHHHHhcCCC
Q 012143 386 AAAFETEENELSKM--------------------------------EECAGAGESAFLDQASAVNVAKECLLAALKADPK 433 (470)
Q Consensus 386 ~~A~~~~~~~~~~~--------------------------------~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~p~ 433 (470)
+.|.....++++.. ++..+..+|..+....++++|.++|.+++..+|+
T Consensus 770 ~~a~~lmakALQecp~sg~LWaEaI~le~~~~rkTks~DALkkce~dphVllaia~lfw~e~k~~kar~Wf~Ravk~d~d 849 (913)
T KOG0495|consen 770 EQAELLMAKALQECPSSGLLWAEAIWLEPRPQRKTKSIDALKKCEHDPHVLLAIAKLFWSEKKIEKAREWFERAVKKDPD 849 (913)
T ss_pred HHHHHHHHHHHHhCCccchhHHHHHHhccCcccchHHHHHHHhccCCchhHHHHHHHHHHHHHHHHHHHHHHHHHccCCc
Confidence 88888877766532 2244557888888999999999999999999999
Q ss_pred cHHHHHHHHHHHHHcCChHHHHHHHHHHHHhhc
Q 012143 434 AAHIWANLANAYYLTGDHRSSGKCLEKVLMVYC 466 (470)
Q Consensus 434 ~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~ 466 (470)
+.++|..+-..+...|.-++-.+.|.+...--|
T Consensus 850 ~GD~wa~fykfel~hG~eed~kev~~~c~~~EP 882 (913)
T KOG0495|consen 850 NGDAWAWFYKFELRHGTEEDQKEVLKKCETAEP 882 (913)
T ss_pred cchHHHHHHHHHHHhCCHHHHHHHHHHHhccCC
Confidence 999999999999999998888888887765444
|
|
| >KOG0548 consensus Molecular co-chaperone STI1 [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=99.93 E-value=1.4e-22 Score=177.04 Aligned_cols=410 Identities=14% Similarity=0.051 Sum_probs=242.5
Q ss_pred hhhhhhhhhhhhhhHHHHHHHHHHHHhcCCCCcchhhhcccchhhhhcChhhHHHHHHHHHHhCCCChhHHHHHHHHHHH
Q 012143 8 AEVEGKKINKLGKCRSRISSKMDSALEFGVDADGDQSGLGTSSSSREEKVSSLKTGLVHVARKMPKNAHAHFLLGLMYQR 87 (470)
Q Consensus 8 ~~~~~~~~~~~g~~~~a~~~~~~~~l~~~p~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~l~~~~~~ 87 (470)
.-..|+..+..|++..++ ..|..+|.++|.+--.+.+...+ +...|+|++|.+.-.+.++++|+.+..|..+|..+.-
T Consensus 5 ~k~kgnaa~s~~d~~~ai-~~~t~ai~l~p~nhvlySnrsaa-~a~~~~~~~al~da~k~~~l~p~w~kgy~r~Gaa~~~ 82 (539)
T KOG0548|consen 5 LKEKGNAAFSSGDFETAI-RLFTEAIMLSPTNHVLYSNRSAA-YASLGSYEKALKDATKTRRLNPDWAKGYSRKGAALFG 82 (539)
T ss_pred HHHHHHhhcccccHHHHH-HHHHHHHccCCCccchhcchHHH-HHHHhhHHHHHHHHHHHHhcCCchhhHHHHhHHHHHh
Confidence 345688899999999999 99999999999988888899999 9999999999999999999999999999999999999
Q ss_pred hCChhHHHHHHHHHHHHHhhhhcccchhhhHHHHHHhhhc---------cccccccCCCccccccCcccHHHHHHHHHHh
Q 012143 88 LGQPLKAVSSYEKAEEILLRCEADIARPELLSLVQIHHAQ---------CLLPESSGDNSLDKELEPEELEEILSKLKES 158 (470)
Q Consensus 88 ~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~---------~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~ 158 (470)
.|+|++|+..|.+.|+.+|++..... .+..++... ..++..+... ...+.--.+.+.....+.
T Consensus 83 lg~~~eA~~ay~~GL~~d~~n~~L~~-----gl~~a~~~~~~~~~~~~~p~~~~~l~~~---p~t~~~~~~~~~~~~l~~ 154 (539)
T KOG0548|consen 83 LGDYEEAILAYSEGLEKDPSNKQLKT-----GLAQAYLEDYAADQLFTKPYFHEKLANL---PLTNYSLSDPAYVKILEI 154 (539)
T ss_pred cccHHHHHHHHHHHhhcCCchHHHHH-----hHHHhhhHHHHhhhhccCcHHHHHhhcC---hhhhhhhccHHHHHHHHH
Confidence 99999999999999999988743211 000111000 0000000000 000000001122222222
Q ss_pred hhcCccchHHHHH-------HHHHHHHcCChHHHHHHHHHHhh-----cCCC---------------------ChHHHHH
Q 012143 159 MQSDTRQAVVWNT-------LGLILLKSGRLQSSISVLSSLLA-----VDPN---------------------NCDCIGN 205 (470)
Q Consensus 159 ~~~~p~~~~~~~~-------l~~~~~~~~~~~~A~~~~~~a~~-----~~~~---------------------~~~~~~~ 205 (470)
++.+|.+...+.+ +|.+... +.. ..+..... ..|. -......
T Consensus 155 ~~~~p~~l~~~l~d~r~m~a~~~l~~~-~~~----~~~~~~~~~~~~~~~p~~~~~~~~~~~~d~~ee~~~k~~a~~ek~ 229 (539)
T KOG0548|consen 155 IQKNPTSLKLYLNDPRLMKADGQLKGV-DEL----LFYASGIEILASMAEPCKQEHNGFPIIEDNTEERRVKEKAHKEKE 229 (539)
T ss_pred hhcCcHhhhcccccHHHHHHHHHHhcC-ccc----cccccccccCCCCCCcccccCCCCCccchhHHHHHHHHhhhHHHH
Confidence 3333332221111 1111000 000 00000000 0110 0123455
Q ss_pred HHHHHHHcCCHHHHHHHHHHHHhhCCCChHHHHHHHHHHHhhhcccccccccchhhhhHHHhcCCHHHHHHHHHHHHhcC
Q 012143 206 LGIAYFQSGDMEQSAKCFQDLILKDQNHPAALINYAALLLCKYGSVLAGAGANTGEGACLDQASAVNVAKECLLAALKAD 285 (470)
Q Consensus 206 la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~ 285 (470)
+|.......++..|++.|..++.++ .+...+.+.+.++... +....-.+..++|++.-.......
T Consensus 230 lgnaaykkk~f~~a~q~y~~a~el~-~~it~~~n~aA~~~e~--------------~~~~~c~~~c~~a~E~gre~rad~ 294 (539)
T KOG0548|consen 230 LGNAAYKKKDFETAIQHYAKALELA-TDITYLNNIAAVYLER--------------GKYAECIELCEKAVEVGRELRADY 294 (539)
T ss_pred HHHHHHHhhhHHHHHHHHHHHHhHh-hhhHHHHHHHHHHHhc--------------cHHHHhhcchHHHHHHhHHHHHHH
Confidence 6666666666666666666666666 5555555555555532 222233333333443333222211
Q ss_pred CCCHHHHHHHHHHHHHcCChhHHHHHHHHHHhcCCCcccHHHHHHHHHHHHhhhccCchHHhhhhHHHHHHHhhcCCCCC
Q 012143 286 PKAAHIWANLANAYYLTGDHRSSGKCLEKAAKLEPNCMSTRYAVAVSRIKDAERSQEPTEQLSWAGNEMASILREGDPVQ 365 (470)
Q Consensus 286 p~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~p~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 365 (470)
..-......+|..|...++++.|+.+|.+++....+ ++.... +....+. .........+.
T Consensus 295 klIak~~~r~g~a~~k~~~~~~ai~~~~kaLte~Rt-~~~ls~-----lk~~Ek~--------------~k~~e~~a~~~ 354 (539)
T KOG0548|consen 295 KLIAKALARLGNAYTKREDYEGAIKYYQKALTEHRT-PDLLSK-----LKEAEKA--------------LKEAERKAYIN 354 (539)
T ss_pred HHHHHHHHHhhhhhhhHHhHHHHHHHHHHHhhhhcC-HHHHHH-----HHHHHHH--------------HHHHHHHHhhC
Confidence 112233334666677777777777777776654332 110000 0000000 00000011111
Q ss_pred CCcHHHHHHHHHHHhccccHHHHHHHHHHHhc--chhhhhHhhHHHHHHHhccHHHHHHHHHHHHhcCCCcHHHHHHHHH
Q 012143 366 IEPPIAWAGFAAVQKTHHEVAAAFETEENELS--KMEECAGAGESAFLDQASAVNVAKECLLAALKADPKAAHIWANLAN 443 (470)
Q Consensus 366 ~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~--~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~ 443 (470)
|....--..-|..++..|+|..|+..|.+++. |.+...+.+.|.||..++.+..|+...+++++++|+...+|...|.
T Consensus 355 pe~A~e~r~kGne~Fk~gdy~~Av~~YteAIkr~P~Da~lYsNRAac~~kL~~~~~aL~Da~~~ieL~p~~~kgy~RKg~ 434 (539)
T KOG0548|consen 355 PEKAEEEREKGNEAFKKGDYPEAVKHYTEAIKRDPEDARLYSNRAACYLKLGEYPEALKDAKKCIELDPNFIKAYLRKGA 434 (539)
T ss_pred hhHHHHHHHHHHHHHhccCHHHHHHHHHHHHhcCCchhHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCchHHHHHHHHHH
Confidence 22233344458888888888888888888665 5555667788888888888888888888888888888888888888
Q ss_pred HHHHcCChHHHHHHHHHHHHhhcc
Q 012143 444 AYYLTGDHRSSGKCLEKVLMVYCS 467 (470)
Q Consensus 444 ~~~~~g~~~~A~~~~~~al~~~~~ 467 (470)
++..+.+|++|.+.|++++++-|+
T Consensus 435 al~~mk~ydkAleay~eale~dp~ 458 (539)
T KOG0548|consen 435 ALRAMKEYDKALEAYQEALELDPS 458 (539)
T ss_pred HHHHHHHHHHHHHHHHHHHhcCch
Confidence 888888888888888888887664
|
|
| >KOG4162 consensus Predicted calmodulin-binding protein [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=99.92 E-value=5.9e-22 Score=180.07 Aligned_cols=420 Identities=15% Similarity=0.094 Sum_probs=312.2
Q ss_pred hhhhhhhhHHHHHHHHHHHHhcCCCCcchhhhcccchhhhhcChhhHHHHHHHHHHhC--CCChhHHHHHHHHHH-HhCC
Q 012143 14 KINKLGKCRSRISSKMDSALEFGVDADGDQSGLGTSSSSREEKVSSLKTGLVHVARKM--PKNAHAHFLLGLMYQ-RLGQ 90 (470)
Q Consensus 14 ~~~~~g~~~~a~~~~~~~~l~~~p~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~--p~~~~~~~~l~~~~~-~~g~ 90 (470)
.+...|.+.... ..|++++......-..|+..+.. +...|.-..|...++..+... |.++..+...+.++. ..|.
T Consensus 332 al~~~g~f~~la-e~fE~~~~~~~~~~e~w~~~als-~saag~~s~Av~ll~~~~~~~~~ps~~s~~Lmasklc~e~l~~ 409 (799)
T KOG4162|consen 332 ALSRCGQFEVLA-EQFEQALPFSFGEHERWYQLALS-YSAAGSDSKAVNLLRESLKKSEQPSDISVLLMASKLCIERLKL 409 (799)
T ss_pred HHHHHHHHHHHH-HHHHHHhHhhhhhHHHHHHHHHH-HHHhccchHHHHHHHhhcccccCCCcchHHHHHHHHHHhchhh
Confidence 355678888888 89999998888888999999999 999999999999999999888 888887777766655 5789
Q ss_pred hhHHHHHHHHHHHHHhhhhcccchhhhHHHHHHhhhccccccccCCCccccccCcccHHHHHHHHHHhhhcCccchHHHH
Q 012143 91 PLKAVSSYEKAEEILLRCEADIARPELLSLVQIHHAQCLLPESSGDNSLDKELEPEELEEILSKLKESMQSDTRQAVVWN 170 (470)
Q Consensus 91 ~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~ 170 (470)
.++++.+-.+++...-.. .... ....+...|.+|..+.......-.+.....++++.++++++.+|+|+.+.+
T Consensus 410 ~eegldYA~kai~~~~~~-----~~~l--~~~~~l~lGi~y~~~A~~a~~~seR~~~h~kslqale~av~~d~~dp~~if 482 (799)
T KOG4162|consen 410 VEEGLDYAQKAISLLGGQ-----RSHL--KPRGYLFLGIAYGFQARQANLKSERDALHKKSLQALEEAVQFDPTDPLVIF 482 (799)
T ss_pred hhhHHHHHHHHHHHhhhh-----hhhh--hhhHHHHHHHHHHhHhhcCCChHHHHHHHHHHHHHHHHHHhcCCCCchHHH
Confidence 999999999999853111 1111 123444555555444433222233445567899999999999999999999
Q ss_pred HHHHHHHHcCChHHHHHHHHHHhhc-CCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCChHHHHHHHHHHHhhhc
Q 012143 171 TLGLILLKSGRLQSSISVLSSLLAV-DPNNCDCIGNLGIAYFQSGDMEQSAKCFQDLILKDQNHPAALINYAALLLCKYG 249 (470)
Q Consensus 171 ~l~~~~~~~~~~~~A~~~~~~a~~~-~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~l~~~~~~~~~ 249 (470)
.++.-|..+++.+.|.+..++++++ ..+++.+|..++.++...+++.+|+...+.++...|+|.........+-.
T Consensus 483 ~lalq~A~~R~l~sAl~~~~eaL~l~~~~~~~~whLLALvlSa~kr~~~Al~vvd~al~E~~~N~~l~~~~~~i~~---- 558 (799)
T KOG4162|consen 483 YLALQYAEQRQLTSALDYAREALALNRGDSAKAWHLLALVLSAQKRLKEALDVVDAALEEFGDNHVLMDGKIHIEL---- 558 (799)
T ss_pred HHHHHHHHHHhHHHHHHHHHHHHHhcCCccHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHhhhhhhhchhhhhhhh----
Confidence 9999999999999999999999999 55678999999999999999999999999999998887655444333333
Q ss_pred ccccccccchhhhhHHHhcCCHHHHHHHHHHHHhcCCCCHHHHHHH---------HHHHHHcCChhHHHHHHHHHHhc--
Q 012143 250 SVLAGAGANTGEGACLDQASAVNVAKECLLAALKADPKAAHIWANL---------ANAYYLTGDHRSSGKCLEKAAKL-- 318 (470)
Q Consensus 250 ~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~l---------a~~~~~~g~~~~A~~~~~~a~~~-- 318 (470)
..++.++|+..+...+..-.....+-..+ +......++..+|+..+.++...
T Consensus 559 -----------------~~~~~e~~l~t~~~~L~~we~~~~~q~~~~~g~~~~lk~~l~la~~q~~~a~s~sr~ls~l~a 621 (799)
T KOG4162|consen 559 -----------------TFNDREEALDTCIHKLALWEAEYGVQQTLDEGKLLRLKAGLHLALSQPTDAISTSRYLSSLVA 621 (799)
T ss_pred -----------------hcccHHHHHHHHHHHHHHHHhhhhHhhhhhhhhhhhhhcccccCcccccccchhhHHHHHHHH
Confidence 57888888888887776544322222222 22233334555555555544321
Q ss_pred -----------------CCCcccHHHHHHHHHHH--HhhhccCchHHhhhhHHHHHHHhhcCCCCCCCcHHHHHHHHHHH
Q 012143 319 -----------------EPNCMSTRYAVAVSRIK--DAERSQEPTEQLSWAGNEMASILREGDPVQIEPPIAWAGFAAVQ 379 (470)
Q Consensus 319 -----------------~p~~~~~~~~l~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~ 379 (470)
.|.....|+..-...+. ........ -.....++.+...+.+..+..|+..|..+
T Consensus 622 ~~~~~~~se~~Lp~s~~~~~~~~~~~~~~~lwllaa~~~~~~~~-------~~~a~~CL~Ea~~~~~l~~~~~~~~G~~~ 694 (799)
T KOG4162|consen 622 SQLKSAGSELKLPSSTVLPGPDSLWYLLQKLWLLAADLFLLSGN-------DDEARSCLLEASKIDPLSASVYYLRGLLL 694 (799)
T ss_pred hhhhhcccccccCcccccCCCCchHHHHHHHHHHHHHHHHhcCC-------chHHHHHHHHHHhcchhhHHHHHHhhHHH
Confidence 12222222221111111 00000100 11223344555556677888999999999
Q ss_pred hccccHHHHHHHHHHH--hcchhhhhHhhHHHHHHHhccHHHHHH--HHHHHHhcCCCcHHHHHHHHHHHHHcCChHHHH
Q 012143 380 KTHHEVAAAFETEENE--LSKMEECAGAGESAFLDQASAVNVAKE--CLLAALKADPKAAHIWANLANAYYLTGDHRSSG 455 (470)
Q Consensus 380 ~~~~~~~~A~~~~~~~--~~~~~~~~~~~l~~~~~~~~~~~~A~~--~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~ 455 (470)
...|+..+|...|..+ ++|........+|.++.+.|+..-|.. ++..+++++|.++++|+.+|.++.++|+.++|.
T Consensus 695 ~~~~~~~EA~~af~~Al~ldP~hv~s~~Ala~~lle~G~~~la~~~~~L~dalr~dp~n~eaW~~LG~v~k~~Gd~~~Aa 774 (799)
T KOG4162|consen 695 EVKGQLEEAKEAFLVALALDPDHVPSMTALAELLLELGSPRLAEKRSLLSDALRLDPLNHEAWYYLGEVFKKLGDSKQAA 774 (799)
T ss_pred HHHHhhHHHHHHHHHHHhcCCCCcHHHHHHHHHHHHhCCcchHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHccchHHHH
Confidence 9999999999999985 557777888899999999999888888 999999999999999999999999999999999
Q ss_pred HHHHHHHHhhccCCC
Q 012143 456 KCLEKVLMVYCSSNL 470 (470)
Q Consensus 456 ~~~~~al~~~~~~~~ 470 (470)
++|..++++-++++|
T Consensus 775 ecf~aa~qLe~S~PV 789 (799)
T KOG4162|consen 775 ECFQAALQLEESNPV 789 (799)
T ss_pred HHHHHHHhhccCCCc
Confidence 999999999887764
|
|
| >PF13429 TPR_15: Tetratricopeptide repeat; PDB: 2VQ2_A 2PL2_B | Back alignment and domain information |
|---|
Probab=99.92 E-value=5.3e-24 Score=186.43 Aligned_cols=255 Identities=22% Similarity=0.209 Sum_probs=112.1
Q ss_pred ccCcccHHHHHHHHHHhhhc--CccchHHHHHHHHHHHHcCChHHHHHHHHHHhhcCCCChHHHHHHHHHHHHcCCHHHH
Q 012143 142 ELEPEELEEILSKLKESMQS--DTRQAVVWNTLGLILLKSGRLQSSISVLSSLLAVDPNNCDCIGNLGIAYFQSGDMEQS 219 (470)
Q Consensus 142 ~~~~~~~~~A~~~~~~~~~~--~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~la~~~~~~g~~~~A 219 (470)
++..|++++|++.+.+.+.. .|+++..|..+|.+....++++.|+..|++++..++.++..+..++.+ ...+++++|
T Consensus 18 ~~~~~~~~~Al~~L~~~~~~~~~~~~~~~~~~~a~La~~~~~~~~A~~ay~~l~~~~~~~~~~~~~l~~l-~~~~~~~~A 96 (280)
T PF13429_consen 18 LYQRGDYEKALEVLKKAAQKIAPPDDPEYWRLLADLAWSLGDYDEAIEAYEKLLASDKANPQDYERLIQL-LQDGDPEEA 96 (280)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred cccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccc-ccccccccc
Confidence 56788899999999776544 488999999999999999999999999999999999999999999988 799999999
Q ss_pred HHHHHHHHhhCCCChHHHHHHHHHHHhhhcccccccccchhhhhHHHhcCCHHHHHHHHHHHHhcC--CCCHHHHHHHHH
Q 012143 220 AKCFQDLILKDQNHPAALINYAALLLCKYGSVLAGAGANTGEGACLDQASAVNVAKECLLAALKAD--PKAAHIWANLAN 297 (470)
Q Consensus 220 ~~~~~~~l~~~p~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~--p~~~~~~~~la~ 297 (470)
+..++++.+..+ ++..+.....++. ..++++++...++++.... |.++..|..+|.
T Consensus 97 ~~~~~~~~~~~~-~~~~l~~~l~~~~---------------------~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~a~ 154 (280)
T PF13429_consen 97 LKLAEKAYERDG-DPRYLLSALQLYY---------------------RLGDYDEAEELLEKLEELPAAPDSARFWLALAE 154 (280)
T ss_dssp ----------------------H-HH---------------------HTT-HHHHHHHHHHHHH-T---T-HHHHHHHHH
T ss_pred cccccccccccc-ccchhhHHHHHHH---------------------HHhHHHHHHHHHHHHHhccCCCCCHHHHHHHHH
Confidence 999999987654 4455555555544 7899999999999987655 678999999999
Q ss_pred HHHHcCChhHHHHHHHHHHhcCCCcccHHHHHHHHHHHHhhhccCchHHhhhhHHHHHHHhhcCCCCCCCcHHHHHHHHH
Q 012143 298 AYYLTGDHRSSGKCLEKAAKLEPNCMSTRYAVAVSRIKDAERSQEPTEQLSWAGNEMASILREGDPVQIEPPIAWAGFAA 377 (470)
Q Consensus 298 ~~~~~g~~~~A~~~~~~a~~~~p~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ 377 (470)
++.+.|++++|+.+|+++++.+|++.. ++..++.
T Consensus 155 ~~~~~G~~~~A~~~~~~al~~~P~~~~----------------------------------------------~~~~l~~ 188 (280)
T PF13429_consen 155 IYEQLGDPDKALRDYRKALELDPDDPD----------------------------------------------ARNALAW 188 (280)
T ss_dssp HHHHCCHHHHHHHHHHHHHHH-TT-HH----------------------------------------------HHHHHHH
T ss_pred HHHHcCCHHHHHHHHHHHHHcCCCCHH----------------------------------------------HHHHHHH
Confidence 999999999999999999999999654 4555667
Q ss_pred HHhccccHHHHHHHHHHHhc--chhhhhHhhHHHHHHHhccHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHcCChHHHH
Q 012143 378 VQKTHHEVAAAFETEENELS--KMEECAGAGESAFLDQASAVNVAKECLLAALKADPKAAHIWANLANAYYLTGDHRSSG 455 (470)
Q Consensus 378 ~~~~~~~~~~A~~~~~~~~~--~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~ 455 (470)
++...|+.+++...+..... +.++..+..+|.++...|++++|+.+|++++..+|+++..+..+|.++...|+.++|.
T Consensus 189 ~li~~~~~~~~~~~l~~~~~~~~~~~~~~~~la~~~~~lg~~~~Al~~~~~~~~~~p~d~~~~~~~a~~l~~~g~~~~A~ 268 (280)
T PF13429_consen 189 LLIDMGDYDEAREALKRLLKAAPDDPDLWDALAAAYLQLGRYEEALEYLEKALKLNPDDPLWLLAYADALEQAGRKDEAL 268 (280)
T ss_dssp HHCTTCHHHHHHHHHHHHHHH-HTSCCHCHHHHHHHHHHT-HHHHHHHHHHHHHHSTT-HHHHHHHHHHHT---------
T ss_pred HHHHCCChHHHHHHHHHHHHHCcCHHHHHHHHHHHhcccccccccccccccccccccccccccccccccccccccccccc
Confidence 78888888886666665333 5566778899999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHhh
Q 012143 456 KCLEKVLMVY 465 (470)
Q Consensus 456 ~~~~~al~~~ 465 (470)
.+++++++..
T Consensus 269 ~~~~~~~~~l 278 (280)
T PF13429_consen 269 RLRRQALRLL 278 (280)
T ss_dssp ----------
T ss_pred cccccccccc
Confidence 9999998765
|
|
| >KOG1173 consensus Anaphase-promoting complex (APC), Cdc16 subunit [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=99.91 E-value=1.7e-22 Score=177.26 Aligned_cols=280 Identities=16% Similarity=0.120 Sum_probs=242.2
Q ss_pred chhhhhhhhhhhhhhhhHHHHHHHHHHHHhcCCCCcchhhhcccchhhhhcChhhHHHHHHHHHHhCCCChhHHHHHHHH
Q 012143 5 MDVAEVEGKKINKLGKCRSRISSKMDSALEFGVDADGDQSGLGTSSSSREEKVSSLKTGLVHVARKMPKNAHAHFLLGLM 84 (470)
Q Consensus 5 ~~~~~~~~~~~~~~g~~~~a~~~~~~~~l~~~p~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~l~~~ 84 (470)
.+.....+-.++..+++++-. ..++..++.+|-+...+...-.+ +...|+..+..-.=.+.++..|+.+..|+.+|..
T Consensus 244 ~dll~~~ad~~y~~c~f~~c~-kit~~lle~dpfh~~~~~~~ia~-l~el~~~n~Lf~lsh~LV~~yP~~a~sW~aVg~Y 321 (611)
T KOG1173|consen 244 LDLLAEKADRLYYGCRFKECL-KITEELLEKDPFHLPCLPLHIAC-LYELGKSNKLFLLSHKLVDLYPSKALSWFAVGCY 321 (611)
T ss_pred HHHHHHHHHHHHHcChHHHHH-HHhHHHHhhCCCCcchHHHHHHH-HHHhcccchHHHHHHHHHHhCCCCCcchhhHHHH
Confidence 344445667788889999998 88999999999888877654447 8899999888888889999999999999999999
Q ss_pred HHHhCChhHHHHHHHHHHHHHhhhhcccchhhhHHHHHHhhhccccccccCCCccccccCcccHHHHHHHHHHhhhcCcc
Q 012143 85 YQRLGQPLKAVSSYEKAEEILLRCEADIARPELLSLVQIHHAQCLLPESSGDNSLDKELEPEELEEILSKLKESMQSDTR 164 (470)
Q Consensus 85 ~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~p~ 164 (470)
|...|++.+|..+|.++..++|.- +..|.+.|..+...+ ..++|+..|..+-+.-|.
T Consensus 322 Yl~i~k~seARry~SKat~lD~~f------------gpaWl~fghsfa~e~-----------EhdQAmaaY~tAarl~~G 378 (611)
T KOG1173|consen 322 YLMIGKYSEARRYFSKATTLDPTF------------GPAWLAFGHSFAGEG-----------EHDQAMAAYFTAARLMPG 378 (611)
T ss_pred HHHhcCcHHHHHHHHHHhhcCccc------------cHHHHHHhHHhhhcc-----------hHHHHHHHHHHHHHhccC
Confidence 999999999999999999997653 345566666655444 459999999999999999
Q ss_pred chHHHHHHHHHHHHcCChHHHHHHHHHHhhcCCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCC----C---ChHHH
Q 012143 165 QAVVWNTLGLILLKSGRLQSSISVLSSLLAVDPNNCDCIGNLGIAYFQSGDMEQSAKCFQDLILKDQ----N---HPAAL 237 (470)
Q Consensus 165 ~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p----~---~~~~~ 237 (470)
.-...+.+|.-|.+.+++.-|.+.|.+++.+.|.+|-++..+|.+.+..+.|.+|..+|+.++..-+ . ..+.+
T Consensus 379 ~hlP~LYlgmey~~t~n~kLAe~Ff~~A~ai~P~Dplv~~Elgvvay~~~~y~~A~~~f~~~l~~ik~~~~e~~~w~p~~ 458 (611)
T KOG1173|consen 379 CHLPSLYLGMEYMRTNNLKLAEKFFKQALAIAPSDPLVLHELGVVAYTYEEYPEALKYFQKALEVIKSVLNEKIFWEPTL 458 (611)
T ss_pred CcchHHHHHHHHHHhccHHHHHHHHHHHHhcCCCcchhhhhhhheeehHhhhHHHHHHHHHHHHHhhhccccccchhHHH
Confidence 9889999999999999999999999999999999999999999999999999999999999984321 1 23345
Q ss_pred HHHHHHHHhhhcccccccccchhhhhHHHhcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCChhHHHHHHHHHHh
Q 012143 238 INYAALLLCKYGSVLAGAGANTGEGACLDQASAVNVAKECLLAALKADPKAAHIWANLANAYYLTGDHRSSGKCLEKAAK 317 (470)
Q Consensus 238 ~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~ 317 (470)
.++|.++. +.+++++|+.+|++++.+.|.++.++..+|.+|..+|+++.|+++|.+++.
T Consensus 459 ~NLGH~~R---------------------kl~~~~eAI~~~q~aL~l~~k~~~~~asig~iy~llgnld~Aid~fhKaL~ 517 (611)
T KOG1173|consen 459 NNLGHAYR---------------------KLNKYEEAIDYYQKALLLSPKDASTHASIGYIYHLLGNLDKAIDHFHKALA 517 (611)
T ss_pred HhHHHHHH---------------------HHhhHHHHHHHHHHHHHcCCCchhHHHHHHHHHHHhcChHHHHHHHHHHHh
Confidence 56666655 899999999999999999999999999999999999999999999999999
Q ss_pred cCCCcccHHHHHH
Q 012143 318 LEPNCMSTRYAVA 330 (470)
Q Consensus 318 ~~p~~~~~~~~l~ 330 (470)
+.|++..+.-.+.
T Consensus 518 l~p~n~~~~~lL~ 530 (611)
T KOG1173|consen 518 LKPDNIFISELLK 530 (611)
T ss_pred cCCccHHHHHHHH
Confidence 9999866554443
|
|
| >PF13429 TPR_15: Tetratricopeptide repeat; PDB: 2VQ2_A 2PL2_B | Back alignment and domain information |
|---|
Probab=99.91 E-value=2.8e-24 Score=188.24 Aligned_cols=259 Identities=18% Similarity=0.147 Sum_probs=118.1
Q ss_pred hhhhhhhhhhHHHHHHHHHHHHh-c-CCCCcchhhhcccchhhhhcChhhHHHHHHHHHHhCCCChhHHHHHHHHHHHhC
Q 012143 12 GKKINKLGKCRSRISSKMDSALE-F-GVDADGDQSGLGTSSSSREEKVSSLKTGLVHVARKMPKNAHAHFLLGLMYQRLG 89 (470)
Q Consensus 12 ~~~~~~~g~~~~a~~~~~~~~l~-~-~p~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~l~~~~~~~g 89 (470)
+..+...|++++|. ..+.+.+. . .|++...|..+|.+ ....++++.|+..+++++..+|.++..+..++.+ ...+
T Consensus 15 A~~~~~~~~~~~Al-~~L~~~~~~~~~~~~~~~~~~~a~L-a~~~~~~~~A~~ay~~l~~~~~~~~~~~~~l~~l-~~~~ 91 (280)
T PF13429_consen 15 ARLLYQRGDYEKAL-EVLKKAAQKIAPPDDPEYWRLLADL-AWSLGDYDEAIEAYEKLLASDKANPQDYERLIQL-LQDG 91 (280)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred cccccccccccccc-ccccccccccccccccccccccccc-cccccccccccccccccccccccccccccccccc-cccc
Confidence 66788899999999 88866554 4 48888899999999 9999999999999999999999999988888888 7899
Q ss_pred ChhHHHHHHHHHHHHHhhhhcccchhhhHHHHHHhhhccccccccCCCccccccCcccHHHHHHHHHHhhhcC--ccchH
Q 012143 90 QPLKAVSSYEKAEEILLRCEADIARPELLSLVQIHHAQCLLPESSGDNSLDKELEPEELEEILSKLKESMQSD--TRQAV 167 (470)
Q Consensus 90 ~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~--p~~~~ 167 (470)
++++|+.++.++.+..+++ ..+ .....+ +...++++++...++++.... |.++.
T Consensus 92 ~~~~A~~~~~~~~~~~~~~-------~~l------~~~l~~-----------~~~~~~~~~~~~~l~~~~~~~~~~~~~~ 147 (280)
T PF13429_consen 92 DPEEALKLAEKAYERDGDP-------RYL------LSALQL-----------YYRLGDYDEAEELLEKLEELPAAPDSAR 147 (280)
T ss_dssp ---------------------------------------H------------HHHTT-HHHHHHHHHHHHH-T---T-HH
T ss_pred ccccccccccccccccccc-------chh------hHHHHH-----------HHHHhHHHHHHHHHHHHHhccCCCCCHH
Confidence 9999999999988764332 111 111111 345677899999999876544 67788
Q ss_pred HHHHHHHHHHHcCChHHHHHHHHHHhhcCCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCChHHHHHHHHHHHhh
Q 012143 168 VWNTLGLILLKSGRLQSSISVLSSLLAVDPNNCDCIGNLGIAYFQSGDMEQSAKCFQDLILKDQNHPAALINYAALLLCK 247 (470)
Q Consensus 168 ~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~l~~~~~~~ 247 (470)
.|..+|.++.+.|++++|+.+|+++++.+|+++.+...++.++...|+++++.+.+.......|.++..+..+|.++.
T Consensus 148 ~~~~~a~~~~~~G~~~~A~~~~~~al~~~P~~~~~~~~l~~~li~~~~~~~~~~~l~~~~~~~~~~~~~~~~la~~~~-- 225 (280)
T PF13429_consen 148 FWLALAEIYEQLGDPDKALRDYRKALELDPDDPDARNALAWLLIDMGDYDEAREALKRLLKAAPDDPDLWDALAAAYL-- 225 (280)
T ss_dssp HHHHHHHHHHHCCHHHHHHHHHHHHHHH-TT-HHHHHHHHHHHCTTCHHHHHHHHHHHHHHH-HTSCCHCHHHHHHHH--
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHCCChHHHHHHHHHHHHHCcCHHHHHHHHHHHhc--
Confidence 999999999999999999999999999999999999999999999999999999999988888888888888888887
Q ss_pred hcccccccccchhhhhHHHhcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCChhHHHHHHHHHHhc
Q 012143 248 YGSVLAGAGANTGEGACLDQASAVNVAKECLLAALKADPKAAHIWANLANAYYLTGDHRSSGKCLEKAAKL 318 (470)
Q Consensus 248 ~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~ 318 (470)
..|++++|+.+|+++++.+|+++.++..+|.++...|+.++|..++.+++..
T Consensus 226 -------------------~lg~~~~Al~~~~~~~~~~p~d~~~~~~~a~~l~~~g~~~~A~~~~~~~~~~ 277 (280)
T PF13429_consen 226 -------------------QLGRYEEALEYLEKALKLNPDDPLWLLAYADALEQAGRKDEALRLRRQALRL 277 (280)
T ss_dssp -------------------HHT-HHHHHHHHHHHHHHSTT-HHHHHHHHHHHT------------------
T ss_pred -------------------cccccccccccccccccccccccccccccccccccccccccccccccccccc
Confidence 7999999999999999999999999999999999999999999999988753
|
|
| >KOG2003 consensus TPR repeat-containing protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.91 E-value=9.9e-22 Score=168.18 Aligned_cols=404 Identities=17% Similarity=0.094 Sum_probs=300.1
Q ss_pred hhhhhhhhhhhHHHHHHHHHHHHhcCCCC-----cchhhhcccchhhhhcChhhHHHHHHHHHHhCCCChhHHHHHHHHH
Q 012143 11 EGKKINKLGKCRSRISSKMDSALEFGVDA-----DGDQSGLGTSSSSREEKVSSLKTGLVHVARKMPKNAHAHFLLGLMY 85 (470)
Q Consensus 11 ~~~~~~~~g~~~~a~~~~~~~~l~~~p~~-----~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~l~~~~ 85 (470)
-|+.+++...+.+++ ..|.-+|..-|.- .....+.|.. +.+.|.|+.|+..|+.+.+..|+.. +-++|..|+
T Consensus 243 igni~~kkr~fskai-kfyrmaldqvpsink~~rikil~nigvt-fiq~gqy~dainsfdh~m~~~pn~~-a~~nl~i~~ 319 (840)
T KOG2003|consen 243 IGNIHFKKREFSKAI-KFYRMALDQVPSINKDMRIKILNNIGVT-FIQAGQYDDAINSFDHCMEEAPNFI-AALNLIICA 319 (840)
T ss_pred ecceeeehhhHHHHH-HHHHHHHhhccccchhhHHHHHhhcCee-EEecccchhhHhhHHHHHHhCccHH-hhhhhhhhh
Confidence 356677777888888 8888888887753 2355678888 9999999999999999999988755 445677888
Q ss_pred HHhCChhHHHHHHHHHHHHHh--hhhccc---chhh-----------hH----------------HHHHHh-------hh
Q 012143 86 QRLGQPLKAVSSYEKAEEILL--RCEADI---ARPE-----------LL----------------SLVQIH-------HA 126 (470)
Q Consensus 86 ~~~g~~~~A~~~~~~al~~~~--~~~~~~---~~~~-----------~~----------------~~~~~~-------~~ 126 (470)
+..|+-++-.+.|.+.+.+-. +++... ..|+ .+ ..+.+. ++
T Consensus 320 f~i~d~ekmkeaf~kli~ip~~~dddkyi~~~ddp~~~ll~eai~nd~lk~~ek~~ka~aek~i~ta~kiiapvi~~~fa 399 (840)
T KOG2003|consen 320 FAIGDAEKMKEAFQKLIDIPGEIDDDKYIKEKDDPDDNLLNEAIKNDHLKNMEKENKADAEKAIITAAKIIAPVIAPDFA 399 (840)
T ss_pred eecCcHHHHHHHHHHHhcCCCCCCcccccCCcCCcchHHHHHHHhhHHHHHHHHhhhhhHHHHHHHHHHHhccccccchh
Confidence 889999999999999887521 110000 0000 00 000000 00
Q ss_pred ----c------cccccc----cCCCccccccCcccHHHHHHHHHHhhhcCccch-HHHHHHHHHHHHc--CChHHHHHHH
Q 012143 127 ----Q------CLLPES----SGDNSLDKELEPEELEEILSKLKESMQSDTRQA-VVWNTLGLILLKS--GRLQSSISVL 189 (470)
Q Consensus 127 ----~------~~~~~~----~~~~~~~~~~~~~~~~~A~~~~~~~~~~~p~~~-~~~~~l~~~~~~~--~~~~~A~~~~ 189 (470)
+ +..+.. +.-...-.++++|+++.|+++++-.-..+.... .+-.++..+++.+ .++.+|..+-
T Consensus 400 ~g~dwcle~lk~s~~~~la~dlei~ka~~~lk~~d~~~aieilkv~~~kdnk~~saaa~nl~~l~flqggk~~~~aqqya 479 (840)
T KOG2003|consen 400 AGCDWCLESLKASQHAELAIDLEINKAGELLKNGDIEGAIEILKVFEKKDNKTASAAANNLCALRFLQGGKDFADAQQYA 479 (840)
T ss_pred cccHHHHHHHHHhhhhhhhhhhhhhHHHHHHhccCHHHHHHHHHHHHhccchhhHHHhhhhHHHHHHhcccchhHHHHHH
Confidence 0 000000 001112247899999999999877665554332 3445566666664 4788999999
Q ss_pred HHHhhcCCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCChHHHHHHHHHHHhhhcccccccccchhhhhHHHhcC
Q 012143 190 SSLLAVDPNNCDCIGNLGIAYFQSGDMEQSAKCFQDLILKDQNHPAALINYAALLLCKYGSVLAGAGANTGEGACLDQAS 269 (470)
Q Consensus 190 ~~a~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 269 (470)
..++.++.-++.++.+.|.+-+..|++++|.+.|+.++..+.....+++++|..+. .+|
T Consensus 480 d~aln~dryn~~a~~nkgn~~f~ngd~dka~~~ykeal~ndasc~ealfniglt~e---------------------~~~ 538 (840)
T KOG2003|consen 480 DIALNIDRYNAAALTNKGNIAFANGDLDKAAEFYKEALNNDASCTEALFNIGLTAE---------------------ALG 538 (840)
T ss_pred HHHhcccccCHHHhhcCCceeeecCcHHHHHHHHHHHHcCchHHHHHHHHhcccHH---------------------Hhc
Confidence 99999999999999999999999999999999999999999888899888887776 799
Q ss_pred CHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCChhHHHHHHHHHHhcCCCcccHHHHHHHHHHHHhhhccCchHHhhh
Q 012143 270 AVNVAKECLLAALKADPKAAHIWANLANAYYLTGDHRSSGKCLEKAAKLEPNCMSTRYAVAVSRIKDAERSQEPTEQLSW 349 (470)
Q Consensus 270 ~~~~A~~~~~~~~~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~p~~~~~~~~l~~~~~~~~~~~~~~~~~~~~ 349 (470)
+.++|+++|-+.-.+--++..++..++.+|..+.+..+|++++.++..+-|+++..+..++-..-.+..+..
T Consensus 539 ~ldeald~f~klh~il~nn~evl~qianiye~led~aqaie~~~q~~slip~dp~ilskl~dlydqegdksq-------- 610 (840)
T KOG2003|consen 539 NLDEALDCFLKLHAILLNNAEVLVQIANIYELLEDPAQAIELLMQANSLIPNDPAILSKLADLYDQEGDKSQ-------- 610 (840)
T ss_pred CHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHhhCHHHHHHHHHHhcccCCCCHHHHHHHHHHhhcccchhh--------
Confidence 999999999998888888999999999999999999999999999999999998877666543322221111
Q ss_pred hHHHHHHHhhcCCCCCCCcHHHHHHHHHHHhccccHHHHHHHHHH--HhcchhhhhHhhHHHHHHHhccHHHHHHHHHHH
Q 012143 350 AGNEMASILREGDPVQIEPPIAWAGFAAVQKTHHEVAAAFETEEN--ELSKMEECAGAGESAFLDQASAVNVAKECLLAA 427 (470)
Q Consensus 350 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~--~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a 427 (470)
+ ....-......|.+.+....++..|....-+++++..+.+ .+.|....-...++.|+.+.|+|.+|.+.|+..
T Consensus 611 a----fq~~ydsyryfp~nie~iewl~ayyidtqf~ekai~y~ekaaliqp~~~kwqlmiasc~rrsgnyqka~d~yk~~ 686 (840)
T KOG2003|consen 611 A----FQCHYDSYRYFPCNIETIEWLAAYYIDTQFSEKAINYFEKAALIQPNQSKWQLMIASCFRRSGNYQKAFDLYKDI 686 (840)
T ss_pred h----hhhhhhcccccCcchHHHHHHHHHHHhhHHHHHHHHHHHHHHhcCccHHHHHHHHHHHHHhcccHHHHHHHHHHH
Confidence 1 1111222333456667777888899999999999999988 345666666678889999999999999999999
Q ss_pred HhcCCCcHHHHHHHHHHHHHcCC
Q 012143 428 LKADPKAAHIWANLANAYYLTGD 450 (470)
Q Consensus 428 l~~~p~~~~~~~~la~~~~~~g~ 450 (470)
-...|.+.+.+..|-++.-.+|-
T Consensus 687 hrkfpedldclkflvri~~dlgl 709 (840)
T KOG2003|consen 687 HRKFPEDLDCLKFLVRIAGDLGL 709 (840)
T ss_pred HHhCccchHHHHHHHHHhccccc
Confidence 99999999999888888877664
|
|
| >PRK12370 invasion protein regulator; Provisional | Back alignment and domain information |
|---|
Probab=99.91 E-value=1.7e-21 Score=185.84 Aligned_cols=250 Identities=14% Similarity=0.047 Sum_probs=206.1
Q ss_pred CcccHHHHHHHHHHhhhcCccchHHHHHHHHHHHHc---------CChHHHHHHHHHHhhcCCCChHHHHHHHHHHHHcC
Q 012143 144 EPEELEEILSKLKESMQSDTRQAVVWNTLGLILLKS---------GRLQSSISVLSSLLAVDPNNCDCIGNLGIAYFQSG 214 (470)
Q Consensus 144 ~~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~---------~~~~~A~~~~~~a~~~~~~~~~~~~~la~~~~~~g 214 (470)
..+++++|+..|+++++.+|+++.++..+|.++... +++++|+..++++++++|+++.++..+|.++...|
T Consensus 273 ~~~~~~~A~~~~~~Al~ldP~~a~a~~~La~~~~~~~~~g~~~~~~~~~~A~~~~~~Al~ldP~~~~a~~~lg~~~~~~g 352 (553)
T PRK12370 273 TPYSLQQALKLLTQCVNMSPNSIAPYCALAECYLSMAQMGIFDKQNAMIKAKEHAIKATELDHNNPQALGLLGLINTIHS 352 (553)
T ss_pred CHHHHHHHHHHHHHHHhcCCccHHHHHHHHHHHHHHHHcCCcccchHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcc
Confidence 346678999999999999999999999999887744 34789999999999999999999999999999999
Q ss_pred CHHHHHHHHHHHHhhCCCChHHHHHHHHHHHhhhcccccccccchhhhhHHHhcCCHHHHHHHHHHHHhcCCCCHHHHHH
Q 012143 215 DMEQSAKCFQDLILKDQNHPAALINYAALLLCKYGSVLAGAGANTGEGACLDQASAVNVAKECLLAALKADPKAAHIWAN 294 (470)
Q Consensus 215 ~~~~A~~~~~~~l~~~p~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~ 294 (470)
++++|+..|+++++++|+++.++..+|.++. ..|++++|+..++++++++|.++..+..
T Consensus 353 ~~~~A~~~~~~Al~l~P~~~~a~~~lg~~l~---------------------~~G~~~eAi~~~~~Al~l~P~~~~~~~~ 411 (553)
T PRK12370 353 EYIVGSLLFKQANLLSPISADIKYYYGWNLF---------------------MAGQLEEALQTINECLKLDPTRAAAGIT 411 (553)
T ss_pred CHHHHHHHHHHHHHhCCCCHHHHHHHHHHHH---------------------HCCCHHHHHHHHHHHHhcCCCChhhHHH
Confidence 9999999999999999999999999988887 6999999999999999999998888777
Q ss_pred HHHHHHHcCChhHHHHHHHHHHhcC-CCcccHHHHHHHHHHHHhhhccCchHHhhhhHHHHHHHhhcCCCCCCCcHHHHH
Q 012143 295 LANAYYLTGDHRSSGKCLEKAAKLE-PNCMSTRYAVAVSRIKDAERSQEPTEQLSWAGNEMASILREGDPVQIEPPIAWA 373 (470)
Q Consensus 295 la~~~~~~g~~~~A~~~~~~a~~~~-p~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 373 (470)
++.+++..|++++|+..+++++... |++ +..+.
T Consensus 412 ~~~~~~~~g~~eeA~~~~~~~l~~~~p~~----------------------------------------------~~~~~ 445 (553)
T PRK12370 412 KLWITYYHTGIDDAIRLGDELRSQHLQDN----------------------------------------------PILLS 445 (553)
T ss_pred HHHHHHhccCHHHHHHHHHHHHHhccccC----------------------------------------------HHHHH
Confidence 7888888999999999999998775 443 23566
Q ss_pred HHHHHHhccccHHHHHHHHHHHhc--chhhhhHhhHHHHHHHhccHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHcCCh
Q 012143 374 GFAAVQKTHHEVAAAFETEENELS--KMEECAGAGESAFLDQASAVNVAKECLLAALKADPKAAHIWANLANAYYLTGDH 451 (470)
Q Consensus 374 ~l~~~~~~~~~~~~A~~~~~~~~~--~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~ 451 (470)
.+|.++...|++++|...+.+... +....++..++..+...| ++|...+++.++..-..+.-...+..+|.-.|+.
T Consensus 446 ~la~~l~~~G~~~eA~~~~~~~~~~~~~~~~~~~~l~~~~~~~g--~~a~~~l~~ll~~~~~~~~~~~~~~~~~~~~g~~ 523 (553)
T PRK12370 446 MQVMFLSLKGKHELARKLTKEISTQEITGLIAVNLLYAEYCQNS--ERALPTIREFLESEQRIDNNPGLLPLVLVAHGEA 523 (553)
T ss_pred HHHHHHHhCCCHHHHHHHHHHhhhccchhHHHHHHHHHHHhccH--HHHHHHHHHHHHHhhHhhcCchHHHHHHHHHhhh
Confidence 778888889999999999887544 333345667777777777 4777777776654333333334488888889998
Q ss_pred HHHHHHHHHHHH
Q 012143 452 RSSGKCLEKVLM 463 (470)
Q Consensus 452 ~~A~~~~~~al~ 463 (470)
+.+..+ +++.+
T Consensus 524 ~~~~~~-~~~~~ 534 (553)
T PRK12370 524 IAEKMW-NKFKN 534 (553)
T ss_pred HHHHHH-HHhhc
Confidence 888877 66544
|
|
| >KOG1125 consensus TPR repeat-containing protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.91 E-value=1.6e-22 Score=178.21 Aligned_cols=263 Identities=17% Similarity=0.168 Sum_probs=222.6
Q ss_pred hhhhhhhhhhhhhhHHHHHHHHHHHHhcCCCCcchhhhcccchhhhhcChhhHHHHHHHHHHhCCCChhHHHHHHHHHHH
Q 012143 8 AEVEGKKINKLGKCRSRISSKMDSALEFGVDADGDQSGLGTSSSSREEKVSSLKTGLVHVARKMPKNAHAHFLLGLMYQR 87 (470)
Q Consensus 8 ~~~~~~~~~~~g~~~~a~~~~~~~~l~~~p~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~l~~~~~~ 87 (470)
.-.||..+.+.|...+|+ -.|+.++..+|+++++|..+|.+ ....++-..|+.+++++++++|+|..++..||..|..
T Consensus 288 Pf~eG~~lm~nG~L~~A~-LafEAAVkqdP~haeAW~~LG~~-qaENE~E~~ai~AL~rcl~LdP~NleaLmaLAVSytN 365 (579)
T KOG1125|consen 288 PFKEGCNLMKNGDLSEAA-LAFEAAVKQDPQHAEAWQKLGIT-QAENENEQNAISALRRCLELDPTNLEALMALAVSYTN 365 (579)
T ss_pred hHHHHHHHHhcCCchHHH-HHHHHHHhhChHHHHHHHHhhhH-hhhccchHHHHHHHHHHHhcCCccHHHHHHHHHHHhh
Confidence 345899999999999999 89999999999999999999999 9999999999999999999999999999999999999
Q ss_pred hCChhHHHHHHHHHHHHHhhhhcccchhhhHHHHHHhhhccccccccCCCccccccCcccHHHHHHHHHHhhhcCc--cc
Q 012143 88 LGQPLKAVSSYEKAEEILLRCEADIARPELLSLVQIHHAQCLLPESSGDNSLDKELEPEELEEILSKLKESMQSDT--RQ 165 (470)
Q Consensus 88 ~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~p--~~ 165 (470)
.|.-.+|+.++++-+...|....... +..-..-+. -........+..-.+.|-.+....| .+
T Consensus 366 eg~q~~Al~~L~~Wi~~~p~y~~l~~--------------a~~~~~~~~--~~s~~~~~~l~~i~~~fLeaa~~~~~~~D 429 (579)
T KOG1125|consen 366 EGLQNQALKMLDKWIRNKPKYVHLVS--------------AGENEDFEN--TKSFLDSSHLAHIQELFLEAARQLPTKID 429 (579)
T ss_pred hhhHHHHHHHHHHHHHhCccchhccc--------------cCccccccC--CcCCCCHHHHHHHHHHHHHHHHhCCCCCC
Confidence 99999999999999987654321110 000000000 0012334456677788888888888 78
Q ss_pred hHHHHHHHHHHHHcCChHHHHHHHHHHhhcCCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCChHHHHHHHHHHH
Q 012143 166 AVVWNTLGLILLKSGRLQSSISVLSSLLAVDPNNCDCIGNLGIAYFQSGDMEQSAKCFQDLILKDQNHPAALINYAALLL 245 (470)
Q Consensus 166 ~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~l~~~~~ 245 (470)
+++...||.+|...|+|++|++||+.|+...|++...|..||-++..-.+..+|+..|.+|+++.|....+++++|..++
T Consensus 430 pdvQ~~LGVLy~ls~efdraiDcf~~AL~v~Pnd~~lWNRLGAtLAN~~~s~EAIsAY~rALqLqP~yVR~RyNlgIS~m 509 (579)
T KOG1125|consen 430 PDVQSGLGVLYNLSGEFDRAVDCFEAALQVKPNDYLLWNRLGATLANGNRSEEAISAYNRALQLQPGYVRVRYNLGISCM 509 (579)
T ss_pred hhHHhhhHHHHhcchHHHHHHHHHHHHHhcCCchHHHHHHhhHHhcCCcccHHHHHHHHHHHhcCCCeeeeehhhhhhhh
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999988
Q ss_pred hhhcccccccccchhhhhHHHhcCCHHHHHHHHHHHHhcCCC----------CHHHHHHHHHHHHHcCChhHHH
Q 012143 246 CKYGSVLAGAGANTGEGACLDQASAVNVAKECLLAALKADPK----------AAHIWANLANAYYLTGDHRSSG 309 (470)
Q Consensus 246 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~p~----------~~~~~~~la~~~~~~g~~~~A~ 309 (470)
..|.|++|+++|-.+|.+.+. +..+|..|=.++...++.+-+.
T Consensus 510 ---------------------NlG~ykEA~~hlL~AL~mq~ks~~~~~~~~~se~iw~tLR~als~~~~~D~l~ 562 (579)
T KOG1125|consen 510 ---------------------NLGAYKEAVKHLLEALSMQRKSRNHNKAPMASENIWQTLRLALSAMNRSDLLQ 562 (579)
T ss_pred ---------------------hhhhHHHHHHHHHHHHHhhhcccccccCCcchHHHHHHHHHHHHHcCCchHHH
Confidence 699999999999999988665 1246777767777777766443
|
|
| >TIGR00540 hemY_coli hemY protein | Back alignment and domain information |
|---|
Probab=99.90 E-value=6.1e-21 Score=175.52 Aligned_cols=298 Identities=16% Similarity=0.121 Sum_probs=183.5
Q ss_pred hhcccchhhhhcChhhHHHHHHHHHHhCCCChhHHHHHHHHHHHhCChhHHHHHHHHHHHHHhhhhcccchhhhHHHHHH
Q 012143 44 SGLGTSSSSREEKVSSLKTGLVHVARKMPKNAHAHFLLGLMYQRLGQPLKAVSSYEKAEEILLRCEADIARPELLSLVQI 123 (470)
Q Consensus 44 ~~~~~~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~ 123 (470)
...|.. ....|+++.|.+.+.++.+..|+....+...|.+...+|+++.|..++.++.+..|
T Consensus 88 ~~~gll-a~~~g~~~~A~~~l~~~~~~~~~~~~~~llaA~aa~~~g~~~~A~~~l~~a~~~~p----------------- 149 (409)
T TIGR00540 88 TEEALL-KLAEGDYAKAEKLIAKNADHAAEPVLNLIKAAEAAQQRGDEARANQHLEEAAELAG----------------- 149 (409)
T ss_pred HHHHHH-HHhCCCHHHHHHHHHHHhhcCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCC-----------------
Confidence 344555 66677777777777777777776666666677777777777777777777665433
Q ss_pred hhhccccccccCCCccccccCcccHHHHHHHHHHhhhcCccch-HHHHHHHHHHHHcCChHHHHHHHHHHhhcCCCChHH
Q 012143 124 HHAQCLLPESSGDNSLDKELEPEELEEILSKLKESMQSDTRQA-VVWNTLGLILLKSGRLQSSISVLSSLLAVDPNNCDC 202 (470)
Q Consensus 124 ~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~p~~~-~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~ 202 (470)
++. .+....+.++...|+++.|...+++.++..|+++.+
T Consensus 150 ----------------------------------------~~~l~~~~~~a~l~l~~~~~~~Al~~l~~l~~~~P~~~~~ 189 (409)
T TIGR00540 150 ----------------------------------------NDNILVEIARTRILLAQNELHAARHGVDKLLEMAPRHKEV 189 (409)
T ss_pred ----------------------------------------cCchHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHH
Confidence 322 233334566666666666666666666666666666
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHhhCCCChHHHH----HHHHHHHhhhcccccccccchhhhhHHHhcCCHHHHHHHH
Q 012143 203 IGNLGIAYFQSGDMEQSAKCFQDLILKDQNHPAALI----NYAALLLCKYGSVLAGAGANTGEGACLDQASAVNVAKECL 278 (470)
Q Consensus 203 ~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~----~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~ 278 (470)
+..++.++...|++++|.+.+.+..+..+.++.... ....-.. ..+..+++.+.+
T Consensus 190 l~ll~~~~~~~~d~~~a~~~l~~l~k~~~~~~~~~~~l~~~a~~~~l---------------------~~~~~~~~~~~L 248 (409)
T TIGR00540 190 LKLAEEAYIRSGAWQALDDIIDNMAKAGLFDDEEFADLEQKAEIGLL---------------------DEAMADEGIDGL 248 (409)
T ss_pred HHHHHHHHHHHhhHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHH---------------------HHHHHhcCHHHH
Confidence 666666666666666666666666655333332221 1111111 123334445555
Q ss_pred HHHHhcCC----CCHHHHHHHHHHHHHcCChhHHHHHHHHHHhcCCCcccHHHHHHHHHHHHhhhccCchHHhhhhHHHH
Q 012143 279 LAALKADP----KAAHIWANLANAYYLTGDHRSSGKCLEKAAKLEPNCMSTRYAVAVSRIKDAERSQEPTEQLSWAGNEM 354 (470)
Q Consensus 279 ~~~~~~~p----~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~p~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~ 354 (470)
.++....| +++..+..++..+...|++++|...++++++..|++....+.... ...
T Consensus 249 ~~~~~~~p~~~~~~~~l~~~~a~~l~~~g~~~~A~~~l~~~l~~~pd~~~~~~~~l~-~~~------------------- 308 (409)
T TIGR00540 249 LNWWKNQPRHRRHNIALKIALAEHLIDCDDHDSAQEIIFDGLKKLGDDRAISLPLCL-PIP------------------- 308 (409)
T ss_pred HHHHHHCCHHHhCCHHHHHHHHHHHHHCCChHHHHHHHHHHHhhCCCcccchhHHHH-Hhh-------------------
Confidence 55555555 366677777777777777777777777777766666543211100 000
Q ss_pred HHHhhcCCCCCCCcHHHHHHHHHHHhccccHHHHHHHHHHHh--cchhh--hhHhhHHHHHHHhccHHHHHHHHH--HHH
Q 012143 355 ASILREGDPVQIEPPIAWAGFAAVQKTHHEVAAAFETEENEL--SKMEE--CAGAGESAFLDQASAVNVAKECLL--AAL 428 (470)
Q Consensus 355 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~--~~~~~--~~~~~l~~~~~~~~~~~~A~~~~~--~al 428 (470)
....++...+++.+++.+ .|.++ .....+|.++.+.|++++|.++|+ .++
T Consensus 309 ------------------------~l~~~~~~~~~~~~e~~lk~~p~~~~~~ll~sLg~l~~~~~~~~~A~~~le~a~a~ 364 (409)
T TIGR00540 309 ------------------------RLKPEDNEKLEKLIEKQAKNVDDKPKCCINRALGQLLMKHGEFIEAADAFKNVAAC 364 (409)
T ss_pred ------------------------hcCCCChHHHHHHHHHHHHhCCCChhHHHHHHHHHHHHHcccHHHHHHHHHHhHHh
Confidence 001112223333343322 23444 445577888999999999999999 688
Q ss_pred hcCCCcHHHHHHHHHHHHHcCChHHHHHHHHHHHHhh
Q 012143 429 KADPKAAHIWANLANAYYLTGDHRSSGKCLEKVLMVY 465 (470)
Q Consensus 429 ~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~ 465 (470)
+..|+... +..+|.++.++|+.++|.++|++++...
T Consensus 365 ~~~p~~~~-~~~La~ll~~~g~~~~A~~~~~~~l~~~ 400 (409)
T TIGR00540 365 KEQLDAND-LAMAADAFDQAGDKAEAAAMRQDSLGLM 400 (409)
T ss_pred hcCCCHHH-HHHHHHHHHHcCCHHHHHHHHHHHHHHH
Confidence 88897766 5599999999999999999999998876
|
This is an uncharacterized protein encoded next to a heme-biosynthetic enzyme in two gamma division proteobacteria (E. coli and H. influenzae). It is known in no other species. The gene symbol hemY is unfortunate in that an unrelated protein, protoporphyrinogen oxidase, is designated as HemG in E. coli but as HemY in Bacillus subtilis. |
| >PRK14574 hmsH outer membrane protein; Provisional | Back alignment and domain information |
|---|
Probab=99.90 E-value=3.2e-20 Score=180.26 Aligned_cols=400 Identities=9% Similarity=-0.006 Sum_probs=284.2
Q ss_pred hhhhhhhhhhhhhhhhHHHHHHHHHHHHhcCCCCcchhhhcccchhhhhcChhhHHHHHHHHHHhCCCChhHHHHHHHHH
Q 012143 6 DVAEVEGKKINKLGKCRSRISSKMDSALEFGVDADGDQSGLGTSSSSREEKVSSLKTGLVHVARKMPKNAHAHFLLGLMY 85 (470)
Q Consensus 6 ~~~~~~~~~~~~~g~~~~a~~~~~~~~l~~~p~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~l~~~~ 85 (470)
+..-..+....+.|++..|+ +.+.++++.+|++......+..+ +...|+.++|+..+++++...|.....+..+|.++
T Consensus 35 ~~~y~~aii~~r~Gd~~~Al-~~L~qaL~~~P~~~~av~dll~l-~~~~G~~~~A~~~~eka~~p~n~~~~~llalA~ly 112 (822)
T PRK14574 35 DTQYDSLIIRARAGDTAPVL-DYLQEESKAGPLQSGQVDDWLQI-AGWAGRDQEVIDVYERYQSSMNISSRGLASAARAY 112 (822)
T ss_pred hHHHHHHHHHHhCCCHHHHH-HHHHHHHhhCccchhhHHHHHHH-HHHcCCcHHHHHHHHHhccCCCCCHHHHHHHHHHH
Confidence 34455677889999999999 99999999999996544466666 77789999999999999933344444555558899
Q ss_pred HHhCChhHHHHHHHHHHHHHhhhhcccchhhhHHHHHHhhhccccccccCCCccccccCcccHHHHHHHHHHhhhcCccc
Q 012143 86 QRLGQPLKAVSSYEKAEEILLRCEADIARPELLSLVQIHHAQCLLPESSGDNSLDKELEPEELEEILSKLKESMQSDTRQ 165 (470)
Q Consensus 86 ~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~p~~ 165 (470)
...|++++|++.|+++++.+|++. ... ..++.+ +...++.++|+..++++...+|.+
T Consensus 113 ~~~gdyd~Aiely~kaL~~dP~n~------~~l------~gLa~~-----------y~~~~q~~eAl~~l~~l~~~dp~~ 169 (822)
T PRK14574 113 RNEKRWDQALALWQSSLKKDPTNP------DLI------SGMIMT-----------QADAGRGGVVLKQATELAERDPTV 169 (822)
T ss_pred HHcCCHHHHHHHHHHHHhhCCCCH------HHH------HHHHHH-----------HhhcCCHHHHHHHHHHhcccCcch
Confidence 999999999999999999988752 221 222333 345577799999999999999986
Q ss_pred hHHHHHHHHHHHHcCChHHHHHHHHHHhhcCCCChHHHHHHHHHHHHcCCHHHHHHHH----------------------
Q 012143 166 AVVWNTLGLILLKSGRLQSSISVLSSLLAVDPNNCDCIGNLGIAYFQSGDMEQSAKCF---------------------- 223 (470)
Q Consensus 166 ~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~---------------------- 223 (470)
... ..++.++...++..+|+..++++++.+|++..++..+..++...|-...|.+..
T Consensus 170 ~~~-l~layL~~~~~~~~~AL~~~ekll~~~P~n~e~~~~~~~~l~~~~~~~~a~~l~~~~p~~f~~~~~~~l~~~~~a~ 248 (822)
T PRK14574 170 QNY-MTLSYLNRATDRNYDALQASSEAVRLAPTSEEVLKNHLEILQRNRIVEPALRLAKENPNLVSAEHYRQLERDAAAE 248 (822)
T ss_pred HHH-HHHHHHHHhcchHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCcHHHHHHHHhCccccCHHHHHHHHHHHHHH
Confidence 554 666777777888878999999999999999998888887777766555444433
Q ss_pred --------------------------HHHHhhCCCChHH---H----HHHHHHHHhh--hccccc------------ccc
Q 012143 224 --------------------------QDLILKDQNHPAA---L----INYAALLLCK--YGSVLA------------GAG 256 (470)
Q Consensus 224 --------------------------~~~l~~~p~~~~~---~----~~l~~~~~~~--~~~~~~------------~~~ 256 (470)
+..+...|..+.. + ...-.++... ...... ..-
T Consensus 249 ~vr~a~~~~~~~~~r~~~~d~ala~~~~l~~~~~~~p~~~~~~~~~~~Drl~aL~~r~r~~~vi~~y~~l~~~~~~~P~y 328 (822)
T PRK14574 249 QVRMAVLPTRSETERFDIADKALADYQNLLTRWGKDPEAQADYQRARIDRLGALLVRHQTADLIKEYEAMEAEGYKMPDY 328 (822)
T ss_pred HHhhcccccccchhhHHHHHHHHHHHHHHHhhccCCCccchHHHHHHHHHHHHHHHhhhHHHHHHHHHHhhhcCCCCCHH
Confidence 3333322222211 1 0000011100 000000 122
Q ss_pred cchhhhhHHHhcCCHHHHHHHHHHHHhcCC------CCHHHHHHHHHHHHHcCChhHHHHHHHHHHhcCCC---------
Q 012143 257 ANTGEGACLDQASAVNVAKECLLAALKADP------KAAHIWANLANAYYLTGDHRSSGKCLEKAAKLEPN--------- 321 (470)
Q Consensus 257 ~~~~~~~~~~~~~~~~~A~~~~~~~~~~~p------~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~p~--------- 321 (470)
.....|..|...+++++|+.+|.+++.-.| ........|..+|...+++++|..++++.....|-
T Consensus 329 ~~~a~adayl~~~~P~kA~~l~~~~~~~~~~~~~~~~~~~~~~~L~yA~ld~e~~~~A~~~l~~~~~~~p~~~~~~~~~~ 408 (822)
T PRK14574 329 ARRWAASAYIDRRLPEKAAPILSSLYYSDGKTFRNSDDLLDADDLYYSLNESEQLDKAYQFAVNYSEQTPYQVGVYGLPG 408 (822)
T ss_pred HHHHHHHHHHhcCCcHHHHHHHHHHhhccccccCCCcchHHHHHHHHHHHhcccHHHHHHHHHHHHhcCCcEEeccCCCC
Confidence 344578999999999999999999988653 23444578889999999999999999999986662
Q ss_pred -cccHHHHHHHHHHHHhhhccCchHHhhhhHHHHHHHhhcCCCCCCCcHHHHHHHHHHHhccccHHHHHHHHHH--Hhcc
Q 012143 322 -CMSTRYAVAVSRIKDAERSQEPTEQLSWAGNEMASILREGDPVQIEPPIAWAGFAAVQKTHHEVAAAFETEEN--ELSK 398 (470)
Q Consensus 322 -~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~--~~~~ 398 (470)
.+..-+.-+.............. ......+.......|.++.++..+|.++...|.+.+|...++. .+.|
T Consensus 409 ~~pn~d~~~~~~l~a~~~~~~gdl-------~~Ae~~le~l~~~aP~n~~l~~~~A~v~~~Rg~p~~A~~~~k~a~~l~P 481 (822)
T PRK14574 409 KEPNDDWIEGQTLLVQSLVALNDL-------PTAQKKLEDLSSTAPANQNLRIALASIYLARDLPRKAEQELKAVESLAP 481 (822)
T ss_pred CCCCccHHHHHHHHHHHHHHcCCH-------HHHHHHHHHHHHhCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhhhCC
Confidence 11111111111111111111111 1222333333445678899999999999999999999999987 5567
Q ss_pred hhhhhHhhHHHHHHHhccHHHHHHHHHHHHhcCCCcHHHH
Q 012143 399 MEECAGAGESAFLDQASAVNVAKECLLAALKADPKAAHIW 438 (470)
Q Consensus 399 ~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~ 438 (470)
.+..+.++.|.++..++++.+|.....++++..|+++...
T Consensus 482 ~~~~~~~~~~~~al~l~e~~~A~~~~~~l~~~~Pe~~~~~ 521 (822)
T PRK14574 482 RSLILERAQAETAMALQEWHQMELLTDDVISRSPEDIPSQ 521 (822)
T ss_pred ccHHHHHHHHHHHHhhhhHHHHHHHHHHHHhhCCCchhHH
Confidence 7778899999999999999999999999999999998543
|
|
| >KOG2076 consensus RNA polymerase III transcription factor TFIIIC [Transcription] | Back alignment and domain information |
|---|
Probab=99.90 E-value=4e-20 Score=171.11 Aligned_cols=385 Identities=12% Similarity=0.038 Sum_probs=282.9
Q ss_pred hhhhhhhhhhhhhhHHHHHHHHHHHHhcCCCCcchhhhcccchhhhhcChhhHHHHHHHHHHhCCCChhHHHHHHHHHHH
Q 012143 8 AEVEGKKINKLGKCRSRISSKMDSALEFGVDADGDQSGLGTSSSSREEKVSSLKTGLVHVARKMPKNAHAHFLLGLMYQR 87 (470)
Q Consensus 8 ~~~~~~~~~~~g~~~~a~~~~~~~~l~~~p~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~l~~~~~~ 87 (470)
.-.+++.++--|+.++|. ..+..+|..+|.++.+|+.+|.+ +...|+.+++....-.+..++|++.+.|..++....+
T Consensus 142 ll~eAN~lfarg~~eeA~-~i~~EvIkqdp~~~~ay~tL~~I-yEqrGd~eK~l~~~llAAHL~p~d~e~W~~ladls~~ 219 (895)
T KOG2076|consen 142 LLGEANNLFARGDLEEAE-EILMEVIKQDPRNPIAYYTLGEI-YEQRGDIEKALNFWLLAAHLNPKDYELWKRLADLSEQ 219 (895)
T ss_pred HHHHHHHHHHhCCHHHHH-HHHHHHHHhCccchhhHHHHHHH-HHHcccHHHHHHHHHHHHhcCCCChHHHHHHHHHHHh
Confidence 344778888889999999 99999999999999999999999 9999999999999999999999999999999999999
Q ss_pred hCChhHHHHHHHHHHHHHhhhhcccchhhhHHHHHHhhhccccccccCCCccccccCcccHHHHHHHHHHhhhcCccc--
Q 012143 88 LGQPLKAVSSYEKAEEILLRCEADIARPELLSLVQIHHAQCLLPESSGDNSLDKELEPEELEEILSKLKESMQSDTRQ-- 165 (470)
Q Consensus 88 ~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~p~~-- 165 (470)
+|++.+|.-+|.+|++.+|.+- +- ....+.+ +.+.|+...|...|.+++...|..
T Consensus 220 ~~~i~qA~~cy~rAI~~~p~n~-----~~-------~~ers~L-----------~~~~G~~~~Am~~f~~l~~~~p~~d~ 276 (895)
T KOG2076|consen 220 LGNINQARYCYSRAIQANPSNW-----EL-------IYERSSL-----------YQKTGDLKRAMETFLQLLQLDPPVDI 276 (895)
T ss_pred cccHHHHHHHHHHHHhcCCcch-----HH-------HHHHHHH-----------HHHhChHHHHHHHHHHHHhhCCchhH
Confidence 9999999999999999987651 11 1222222 345677799999999999999832
Q ss_pred ---hHHHHHHHHHHHHcCChHHHHHHHHHHhhc--CCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHh--hCCCChHHHH
Q 012143 166 ---AVVWNTLGLILLKSGRLQSSISVLSSLLAV--DPNNCDCIGNLGIAYFQSGDMEQSAKCFQDLIL--KDQNHPAALI 238 (470)
Q Consensus 166 ---~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~--~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~--~~p~~~~~~~ 238 (470)
-+.....+..+...++-+.|++.++.++.. +.-..+.+..++.++.....++.|......... ..+++...-.
T Consensus 277 er~~d~i~~~~~~~~~~~~~e~a~~~le~~~s~~~~~~~~ed~ni~ael~l~~~q~d~~~~~i~~~~~r~~e~d~~e~~~ 356 (895)
T KOG2076|consen 277 ERIEDLIRRVAHYFITHNERERAAKALEGALSKEKDEASLEDLNILAELFLKNKQSDKALMKIVDDRNRESEKDDSEWDT 356 (895)
T ss_pred HHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHhhccccccccHHHHHHHHHHHhHHHHHhhHHHHHHhccccCCChhhhhh
Confidence 123344577788888889999999999883 233445677889999999999999888776554 1111111100
Q ss_pred -HHH----HHHHhhhccccccccc-chhhhhHHHhcCCHHHHHHHHHHHHhcCC-CCHHHHHHHHHHHHHcCChhHHHHH
Q 012143 239 -NYA----ALLLCKYGSVLAGAGA-NTGEGACLDQASAVNVAKECLLAALKADP-KAAHIWANLANAYYLTGDHRSSGKC 311 (470)
Q Consensus 239 -~l~----~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~A~~~~~~~~~~~p-~~~~~~~~la~~~~~~g~~~~A~~~ 311 (470)
.-. ................ ...++.+..+.++..+++..+..--...| +.+..+..++.++...|++.+|+.+
T Consensus 357 ~~~~~~~~~~~~~~~~~~s~~l~v~rl~icL~~L~~~e~~e~ll~~l~~~n~~~~d~~dL~~d~a~al~~~~~~~~Al~~ 436 (895)
T KOG2076|consen 357 DERRREEPNALCEVGKELSYDLRVIRLMICLVHLKERELLEALLHFLVEDNVWVSDDVDLYLDLADALTNIGKYKEALRL 436 (895)
T ss_pred hhhccccccccccCCCCCCccchhHhHhhhhhcccccchHHHHHHHHHHhcCChhhhHHHHHHHHHHHHhcccHHHHHHH
Confidence 000 0000000000001111 22233444456666666666554433334 3678899999999999999999999
Q ss_pred HHHHHhcCCCcccHHHHHHHHHHHHhhhccCchHHhhhhHHHHHHHhhcCCCCCCCcHHHHHHHHHHHhccccHHHHHHH
Q 012143 312 LEKAAKLEPNCMSTRYAVAVSRIKDAERSQEPTEQLSWAGNEMASILREGDPVQIEPPIAWAGFAAVQKTHHEVAAAFET 391 (470)
Q Consensus 312 ~~~a~~~~p~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~ 391 (470)
|..+....+.. +..+|..+|.++...|.+++|+..
T Consensus 437 l~~i~~~~~~~---------------------------------------------~~~vw~~~a~c~~~l~e~e~A~e~ 471 (895)
T KOG2076|consen 437 LSPITNREGYQ---------------------------------------------NAFVWYKLARCYMELGEYEEAIEF 471 (895)
T ss_pred HHHHhcCcccc---------------------------------------------chhhhHHHHHHHHHHhhHHHHHHH
Confidence 99888765542 235789999999999999999999
Q ss_pred HHHHhc--chhhhhHhhHHHHHHHhccHHHHHHHHHHHHhcCCC---------cHHHHHHHHHHHHHcCChHHHHHHHHH
Q 012143 392 EENELS--KMEECAGAGESAFLDQASAVNVAKECLLAALKADPK---------AAHIWANLANAYYLTGDHRSSGKCLEK 460 (470)
Q Consensus 392 ~~~~~~--~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~p~---------~~~~~~~la~~~~~~g~~~~A~~~~~~ 460 (470)
|.+.+. |...++...++.++.+.|+.++|++.++....-+|. ...+......++...|+.++=+..-..
T Consensus 472 y~kvl~~~p~~~D~Ri~Lasl~~~~g~~EkalEtL~~~~~~D~~~~e~~a~~~e~ri~~~r~d~l~~~gk~E~fi~t~~~ 551 (895)
T KOG2076|consen 472 YEKVLILAPDNLDARITLASLYQQLGNHEKALETLEQIINPDGRNAEACAWEPERRILAHRCDILFQVGKREEFINTAST 551 (895)
T ss_pred HHHHHhcCCCchhhhhhHHHHHHhcCCHHHHHHHHhcccCCCccchhhccccHHHHHHHHHHHHHHHhhhHHHHHHHHHH
Confidence 999655 666788999999999999999999999887633322 234567788889999998885444433
Q ss_pred HH
Q 012143 461 VL 462 (470)
Q Consensus 461 al 462 (470)
.+
T Consensus 552 Lv 553 (895)
T KOG2076|consen 552 LV 553 (895)
T ss_pred HH
Confidence 33
|
|
| >PRK11189 lipoprotein NlpI; Provisional | Back alignment and domain information |
|---|
Probab=99.90 E-value=2.7e-21 Score=169.26 Aligned_cols=237 Identities=17% Similarity=0.141 Sum_probs=185.4
Q ss_pred cCcccHHHHHHHHHHhhhcCc----cchHHHHHHHHHHHHcCChHHHHHHHHHHhhcCCCChHHHHHHHHHHHHcCCHHH
Q 012143 143 LEPEELEEILSKLKESMQSDT----RQAVVWNTLGLILLKSGRLQSSISVLSSLLAVDPNNCDCIGNLGIAYFQSGDMEQ 218 (470)
Q Consensus 143 ~~~~~~~~A~~~~~~~~~~~p----~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~la~~~~~~g~~~~ 218 (470)
...+..+.++..+.+++...| ..+..++.+|.++...|++++|+..|+++++++|+++.++..+|.++...|++++
T Consensus 37 ~~~~~~e~~i~~~~~~l~~~~~~~~~~a~~~~~~g~~~~~~g~~~~A~~~~~~Al~l~P~~~~a~~~lg~~~~~~g~~~~ 116 (296)
T PRK11189 37 QPTLQQEVILARLNQILASRDLTDEERAQLHYERGVLYDSLGLRALARNDFSQALALRPDMADAYNYLGIYLTQAGNFDA 116 (296)
T ss_pred CCchHHHHHHHHHHHHHccccCCcHhhHHHHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHCCCHHH
Confidence 456788999999999996443 3367899999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHhhCCCChHHHHHHHHHHHhhhcccccccccchhhhhHHHhcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHH
Q 012143 219 SAKCFQDLILKDQNHPAALINYAALLLCKYGSVLAGAGANTGEGACLDQASAVNVAKECLLAALKADPKAAHIWANLANA 298 (470)
Q Consensus 219 A~~~~~~~l~~~p~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~la~~ 298 (470)
|+..|+++++++|++..++..+|.++. ..|++++|++.|+++++.+|+++..... ..+
T Consensus 117 A~~~~~~Al~l~P~~~~a~~~lg~~l~---------------------~~g~~~eA~~~~~~al~~~P~~~~~~~~-~~l 174 (296)
T PRK11189 117 AYEAFDSVLELDPTYNYAYLNRGIALY---------------------YGGRYELAQDDLLAFYQDDPNDPYRALW-LYL 174 (296)
T ss_pred HHHHHHHHHHhCCCCHHHHHHHHHHHH---------------------HCCCHHHHHHHHHHHHHhCCCCHHHHHH-HHH
Confidence 999999999999999999999998887 6899999999999999999998742222 223
Q ss_pred HHHcCChhHHHHHHHHHHhcCCCcccHHHHHHHHHHHHhhhccCchHHhhhhHHHHHHHhhcCCCCCCCcHHHHHHHHHH
Q 012143 299 YYLTGDHRSSGKCLEKAAKLEPNCMSTRYAVAVSRIKDAERSQEPTEQLSWAGNEMASILREGDPVQIEPPIAWAGFAAV 378 (470)
Q Consensus 299 ~~~~g~~~~A~~~~~~a~~~~p~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~ 378 (470)
....+++++|+..+.+.....+... |. .+.+
T Consensus 175 ~~~~~~~~~A~~~l~~~~~~~~~~~------------------------------------------------~~-~~~~ 205 (296)
T PRK11189 175 AESKLDPKQAKENLKQRYEKLDKEQ------------------------------------------------WG-WNIV 205 (296)
T ss_pred HHccCCHHHHHHHHHHHHhhCCccc------------------------------------------------cH-HHHH
Confidence 4567889999999987765433211 11 1222
Q ss_pred HhccccH--HHHHHHHHHH------hcchhhhhHhhHHHHHHHhccHHHHHHHHHHHHhcCC-CcHHHHHHHHHHHHHcC
Q 012143 379 QKTHHEV--AAAFETEENE------LSKMEECAGAGESAFLDQASAVNVAKECLLAALKADP-KAAHIWANLANAYYLTG 449 (470)
Q Consensus 379 ~~~~~~~--~~A~~~~~~~------~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~p-~~~~~~~~la~~~~~~g 449 (470)
....|+. ++++..+... +.+....+|+.+|.++...|++++|+.+|+++++.+| +.++..+.+..+....+
T Consensus 206 ~~~lg~~~~~~~~~~~~~~~~~~~~l~~~~~ea~~~Lg~~~~~~g~~~~A~~~~~~Al~~~~~~~~e~~~~~~e~~~~~~ 285 (296)
T PRK11189 206 EFYLGKISEETLMERLKAGATDNTELAERLCETYFYLAKYYLSLGDLDEAAALFKLALANNVYNFVEHRYALLELALLGQ 285 (296)
T ss_pred HHHccCCCHHHHHHHHHhcCCCcHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCchHHHHHHHHHHHHHHHh
Confidence 3333433 3344444432 2344557899999999999999999999999999996 66777776666655544
Q ss_pred C
Q 012143 450 D 450 (470)
Q Consensus 450 ~ 450 (470)
.
T Consensus 286 ~ 286 (296)
T PRK11189 286 D 286 (296)
T ss_pred h
Confidence 4
|
|
| >PRK12370 invasion protein regulator; Provisional | Back alignment and domain information |
|---|
Probab=99.89 E-value=1e-20 Score=180.53 Aligned_cols=204 Identities=13% Similarity=0.062 Sum_probs=169.4
Q ss_pred cChhhHHHHHHHHHHhCCCChhHHHHHHHHHHHhCChhHHHHHHHHHHHHHhhhhcccchhhhHHHHHHhhhcccccccc
Q 012143 55 EKVSSLKTGLVHVARKMPKNAHAHFLLGLMYQRLGQPLKAVSSYEKAEEILLRCEADIARPELLSLVQIHHAQCLLPESS 134 (470)
Q Consensus 55 ~~~~~A~~~~~~~l~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 134 (470)
+.+++|...|+++++.+|+++.++..+|.++...+....
T Consensus 275 ~~~~~A~~~~~~Al~ldP~~a~a~~~La~~~~~~~~~g~----------------------------------------- 313 (553)
T PRK12370 275 YSLQQALKLLTQCVNMSPNSIAPYCALAECYLSMAQMGI----------------------------------------- 313 (553)
T ss_pred HHHHHHHHHHHHHHhcCCccHHHHHHHHHHHHHHHHcCC-----------------------------------------
Confidence 445666667777777777766666666666654322110
Q ss_pred CCCccccccCcccHHHHHHHHHHhhhcCccchHHHHHHHHHHHHcCChHHHHHHHHHHhhcCCCChHHHHHHHHHHHHcC
Q 012143 135 GDNSLDKELEPEELEEILSKLKESMQSDTRQAVVWNTLGLILLKSGRLQSSISVLSSLLAVDPNNCDCIGNLGIAYFQSG 214 (470)
Q Consensus 135 ~~~~~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~la~~~~~~g 214 (470)
....+++++|+..++++++.+|+++.++..+|.++...|++++|+..|+++++++|+++.+++.+|.++...|
T Consensus 314 -------~~~~~~~~~A~~~~~~Al~ldP~~~~a~~~lg~~~~~~g~~~~A~~~~~~Al~l~P~~~~a~~~lg~~l~~~G 386 (553)
T PRK12370 314 -------FDKQNAMIKAKEHAIKATELDHNNPQALGLLGLINTIHSEYIVGSLLFKQANLLSPISADIKYYYGWNLFMAG 386 (553)
T ss_pred -------cccchHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCC
Confidence 1134567999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CHHHHHHHHHHHHhhCCCChHHHHHHHHHHHhhhcccccccccchhhhhHHHhcCCHHHHHHHHHHHHhcC-CCCHHHHH
Q 012143 215 DMEQSAKCFQDLILKDQNHPAALINYAALLLCKYGSVLAGAGANTGEGACLDQASAVNVAKECLLAALKAD-PKAAHIWA 293 (470)
Q Consensus 215 ~~~~A~~~~~~~l~~~p~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~-p~~~~~~~ 293 (470)
++++|+..++++++++|.++.....++.++. ..|++++|+..+++++... |+++..+.
T Consensus 387 ~~~eAi~~~~~Al~l~P~~~~~~~~~~~~~~---------------------~~g~~eeA~~~~~~~l~~~~p~~~~~~~ 445 (553)
T PRK12370 387 QLEEALQTINECLKLDPTRAAAGITKLWITY---------------------YHTGIDDAIRLGDELRSQHLQDNPILLS 445 (553)
T ss_pred CHHHHHHHHHHHHhcCCCChhhHHHHHHHHH---------------------hccCHHHHHHHHHHHHHhccccCHHHHH
Confidence 9999999999999999998877655555444 5889999999999999875 78899999
Q ss_pred HHHHHHHHcCChhHHHHHHHHHHhcCCCcccHHH
Q 012143 294 NLANAYYLTGDHRSSGKCLEKAAKLEPNCMSTRY 327 (470)
Q Consensus 294 ~la~~~~~~g~~~~A~~~~~~a~~~~p~~~~~~~ 327 (470)
.+|.++...|++++|...+.++....|....+..
T Consensus 446 ~la~~l~~~G~~~eA~~~~~~~~~~~~~~~~~~~ 479 (553)
T PRK12370 446 MQVMFLSLKGKHELARKLTKEISTQEITGLIAVN 479 (553)
T ss_pred HHHHHHHhCCCHHHHHHHHHHhhhccchhHHHHH
Confidence 9999999999999999999998877776544433
|
|
| >KOG0495 consensus HAT repeat protein [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=99.89 E-value=9.1e-20 Score=162.80 Aligned_cols=366 Identities=16% Similarity=0.079 Sum_probs=305.8
Q ss_pred hhhhhhhHHHHHHHHHHHHhcCCCCcchhhhcccchhhhhcChhhHHHHHHHHHHhCCCChhHHHHHHHHHHHhCChhHH
Q 012143 15 INKLGKCRSRISSKMDSALEFGVDADGDQSGLGTSSSSREEKVSSLKTGLVHVARKMPKNAHAHFLLGLMYQRLGQPLKA 94 (470)
Q Consensus 15 ~~~~g~~~~a~~~~~~~~l~~~p~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~l~~~~~~~g~~~~A 94 (470)
+.+.+-++=+. ..|..+|...|.....|...... -..-|..+....+|++++..-|.....|.+.+..+...|+...|
T Consensus 526 ~~k~~~~~car-AVya~alqvfp~k~slWlra~~~-ek~hgt~Esl~Allqkav~~~pkae~lwlM~ake~w~agdv~~a 603 (913)
T KOG0495|consen 526 CEKRPAIECAR-AVYAHALQVFPCKKSLWLRAAMF-EKSHGTRESLEALLQKAVEQCPKAEILWLMYAKEKWKAGDVPAA 603 (913)
T ss_pred HHhcchHHHHH-HHHHHHHhhccchhHHHHHHHHH-HHhcCcHHHHHHHHHHHHHhCCcchhHHHHHHHHHHhcCCcHHH
Confidence 44445555555 78999999999999999988877 77789999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHhhhhcccchhhhHHHHHHhhhccccccccCCCccccccCcccHHHHHHHHHHhhhcCccchHHHHHHHH
Q 012143 95 VSSYEKAEEILLRCEADIARPELLSLVQIHHAQCLLPESSGDNSLDKELEPEELEEILSKLKESMQSDTRQAVVWNTLGL 174 (470)
Q Consensus 95 ~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~ 174 (470)
...+.++++.+|+++. +|..... ......+++.|..+|.++....|. ..+|+.-+.
T Consensus 604 r~il~~af~~~pnsee------------iwlaavK-----------le~en~e~eraR~llakar~~sgT-eRv~mKs~~ 659 (913)
T KOG0495|consen 604 RVILDQAFEANPNSEE------------IWLAAVK-----------LEFENDELERARDLLAKARSISGT-ERVWMKSAN 659 (913)
T ss_pred HHHHHHHHHhCCCcHH------------HHHHHHH-----------HhhccccHHHHHHHHHHHhccCCc-chhhHHHhH
Confidence 9999999999877532 2222111 135677899999999999987765 678999999
Q ss_pred HHHHcCChHHHHHHHHHHhhcCCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCChHHHHHHHHHHHhhhcccccc
Q 012143 175 ILLKSGRLQSSISVLSSLLAVDPNNCDCIGNLGIAYFQSGDMEQSAKCFQDLILKDQNHPAALINYAALLLCKYGSVLAG 254 (470)
Q Consensus 175 ~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~l~~~~~~~~~~~~~~ 254 (470)
....+++.++|+..++++++..|+....|..+|+++.++++.+.|...|...++..|..+..|..++.+-.
T Consensus 660 ~er~ld~~eeA~rllEe~lk~fp~f~Kl~lmlGQi~e~~~~ie~aR~aY~~G~k~cP~~ipLWllLakleE--------- 730 (913)
T KOG0495|consen 660 LERYLDNVEEALRLLEEALKSFPDFHKLWLMLGQIEEQMENIEMAREAYLQGTKKCPNSIPLWLLLAKLEE--------- 730 (913)
T ss_pred HHHHhhhHHHHHHHHHHHHHhCCchHHHHHHHhHHHHHHHHHHHHHHHHHhccccCCCCchHHHHHHHHHH---------
Confidence 99999999999999999999999999999999999999999999999999999999999999999888766
Q ss_pred cccchhhhhHHHhcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCChhHHHHHHHHHHhcCCCcccHHHHHHHHHH
Q 012143 255 AGANTGEGACLDQASAVNVAKECLLAALKADPKAAHIWANLANAYYLTGDHRSSGKCLEKAAKLEPNCMSTRYAVAVSRI 334 (470)
Q Consensus 255 ~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~p~~~~~~~~l~~~~~ 334 (470)
+.|+...|...++++.-.+|++...|......-.+.|+.+.|.....++++..|++...|..-....-
T Consensus 731 ------------k~~~~~rAR~ildrarlkNPk~~~lwle~Ir~ElR~gn~~~a~~lmakALQecp~sg~LWaEaI~le~ 798 (913)
T KOG0495|consen 731 ------------KDGQLVRARSILDRARLKNPKNALLWLESIRMELRAGNKEQAELLMAKALQECPSSGLLWAEAIWLEP 798 (913)
T ss_pred ------------HhcchhhHHHHHHHHHhcCCCcchhHHHHHHHHHHcCCHHHHHHHHHHHHHhCCccchhHHHHHHhcc
Confidence 68899999999999999999999999999999999999999999999999999998766653221100
Q ss_pred HHhhhccCchHHhhhhHHHHHHHhhcCCCCCCCcHHHHHHHHHHHhccccHHHHHHHHHHHhc--chhhhhHhhHHHHHH
Q 012143 335 KDAERSQEPTEQLSWAGNEMASILREGDPVQIEPPIAWAGFAAVQKTHHEVAAAFETEENELS--KMEECAGAGESAFLD 412 (470)
Q Consensus 335 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~--~~~~~~~~~l~~~~~ 412 (470)
....-. .....+. ....++.+....+..+....++++|.+.|.+++. +...++|..+-..+.
T Consensus 799 --------~~~rkT----ks~DALk----kce~dphVllaia~lfw~e~k~~kar~Wf~Ravk~d~d~GD~wa~fykfel 862 (913)
T KOG0495|consen 799 --------RPQRKT----KSIDALK----KCEHDPHVLLAIAKLFWSEKKIEKAREWFERAVKKDPDNGDAWAWFYKFEL 862 (913)
T ss_pred --------Ccccch----HHHHHHH----hccCCchhHHHHHHHHHHHHHHHHHHHHHHHHHccCCccchHHHHHHHHHH
Confidence 000000 0011111 1225678999999999999999999999999765 666677776666888
Q ss_pred HhccHHHHHHHHHHHHhcCCCcHHHHHHHHH
Q 012143 413 QASAVNVAKECLLAALKADPKAAHIWANLAN 443 (470)
Q Consensus 413 ~~~~~~~A~~~~~~al~~~p~~~~~~~~la~ 443 (470)
+.|.-++-.+.+.+...-.|.+.+.|.....
T Consensus 863 ~hG~eed~kev~~~c~~~EP~hG~~W~avSK 893 (913)
T KOG0495|consen 863 RHGTEEDQKEVLKKCETAEPTHGELWQAVSK 893 (913)
T ss_pred HhCCHHHHHHHHHHHhccCCCCCcHHHHHhh
Confidence 9999999999999999999999988876654
|
|
| >PRK11189 lipoprotein NlpI; Provisional | Back alignment and domain information |
|---|
Probab=99.89 E-value=2.4e-20 Score=163.33 Aligned_cols=221 Identities=16% Similarity=0.115 Sum_probs=179.4
Q ss_pred cCChHHHHHHHHHHhhcCC---C-ChHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCChHHHHHHHHHHHhhhcccccc
Q 012143 179 SGRLQSSISVLSSLLAVDP---N-NCDCIGNLGIAYFQSGDMEQSAKCFQDLILKDQNHPAALINYAALLLCKYGSVLAG 254 (470)
Q Consensus 179 ~~~~~~A~~~~~~a~~~~~---~-~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~l~~~~~~~~~~~~~~ 254 (470)
.+..+.++..+.+++...| . .+..++.+|.++...|++++|+..|+++++++|+++.++..+|.++.
T Consensus 39 ~~~~e~~i~~~~~~l~~~~~~~~~~a~~~~~~g~~~~~~g~~~~A~~~~~~Al~l~P~~~~a~~~lg~~~~--------- 109 (296)
T PRK11189 39 TLQQEVILARLNQILASRDLTDEERAQLHYERGVLYDSLGLRALARNDFSQALALRPDMADAYNYLGIYLT--------- 109 (296)
T ss_pred chHHHHHHHHHHHHHccccCCcHhhHHHHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHH---------
Confidence 3577889999999996444 3 36789999999999999999999999999999999999999999888
Q ss_pred cccchhhhhHHHhcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCChhHHHHHHHHHHhcCCCcccHHHHHHHHHH
Q 012143 255 AGANTGEGACLDQASAVNVAKECLLAALKADPKAAHIWANLANAYYLTGDHRSSGKCLEKAAKLEPNCMSTRYAVAVSRI 334 (470)
Q Consensus 255 ~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~p~~~~~~~~l~~~~~ 334 (470)
..|++++|+..|+++++++|++..++.++|.++...|++++|+..|+++++.+|+++. .
T Consensus 110 ------------~~g~~~~A~~~~~~Al~l~P~~~~a~~~lg~~l~~~g~~~eA~~~~~~al~~~P~~~~--~------- 168 (296)
T PRK11189 110 ------------QAGNFDAAYEAFDSVLELDPTYNYAYLNRGIALYYGGRYELAQDDLLAFYQDDPNDPY--R------- 168 (296)
T ss_pred ------------HCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHH--H-------
Confidence 7999999999999999999999999999999999999999999999999999999752 0
Q ss_pred HHhhhccCchHHhhhhHHHHHHHhhcCCCCCCCcHHHHHHHHHHHhccccHHHHHHHHHHHhcchhhhhHhhHHHHHHHh
Q 012143 335 KDAERSQEPTEQLSWAGNEMASILREGDPVQIEPPIAWAGFAAVQKTHHEVAAAFETEENELSKMEECAGAGESAFLDQA 414 (470)
Q Consensus 335 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~l~~~~~~~ 414 (470)
..|.. +....+++++|+..+.+.....++..|. .+.+....
T Consensus 169 -----------------------------------~~~~~---l~~~~~~~~~A~~~l~~~~~~~~~~~~~-~~~~~~~l 209 (296)
T PRK11189 169 -----------------------------------ALWLY---LAESKLDPKQAKENLKQRYEKLDKEQWG-WNIVEFYL 209 (296)
T ss_pred -----------------------------------HHHHH---HHHccCCHHHHHHHHHHHHhhCCccccH-HHHHHHHc
Confidence 01221 2234568899999997766544444443 45566666
Q ss_pred ccHHHH--HHHH----HHHHhcCCCcHHHHHHHHHHHHHcCChHHHHHHHHHHHHhhccC
Q 012143 415 SAVNVA--KECL----LAALKADPKAAHIWANLANAYYLTGDHRSSGKCLEKVLMVYCSS 468 (470)
Q Consensus 415 ~~~~~A--~~~~----~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~ 468 (470)
|++.++ +..+ +..+++.|+.+++|+++|.++..+|++++|+.+|++++++.|.+
T Consensus 210 g~~~~~~~~~~~~~~~~~~~~l~~~~~ea~~~Lg~~~~~~g~~~~A~~~~~~Al~~~~~~ 269 (296)
T PRK11189 210 GKISEETLMERLKAGATDNTELAERLCETYFYLAKYYLSLGDLDEAAALFKLALANNVYN 269 (296)
T ss_pred cCCCHHHHHHHHHhcCCCcHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCch
Confidence 665433 3222 33335677788999999999999999999999999999987643
|
|
| >KOG1127 consensus TPR repeat-containing protein [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=99.89 E-value=3e-20 Score=173.11 Aligned_cols=402 Identities=12% Similarity=0.057 Sum_probs=306.5
Q ss_pred hHHHHHHHHHHHHhcCCCCcchhhhcccchhhhhcChhhHHHHHHHHHHhCCCChhHHHHHHHHHHHhCChhHHHHHHHH
Q 012143 21 CRSRISSKMDSALEFGVDADGDQSGLGTSSSSREEKVSSLKTGLVHVARKMPKNAHAHFLLGLMYQRLGQPLKAVSSYEK 100 (470)
Q Consensus 21 ~~~a~~~~~~~~l~~~p~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~ 100 (470)
...++ ..+-+++.++|.-+.+|..+|.. +....+..+|.++|.++.++||.+..++-..+..|....+++.|....-.
T Consensus 474 ~~~al-~ali~alrld~~~apaf~~LG~i-Yrd~~Dm~RA~kCf~KAFeLDatdaeaaaa~adtyae~~~we~a~~I~l~ 551 (1238)
T KOG1127|consen 474 SALAL-HALIRALRLDVSLAPAFAFLGQI-YRDSDDMKRAKKCFDKAFELDATDAEAAAASADTYAEESTWEEAFEICLR 551 (1238)
T ss_pred HHHHH-HHHHHHHhcccchhHHHHHHHHH-HHHHHHHHHHHHHHHHHhcCCchhhhhHHHHHHHhhccccHHHHHHHHHH
Confidence 45667 78899999999999999999999 88888999999999999999999999999999999999999999998555
Q ss_pred HHHHHhhhhcccchhhhHHHHHHhhhccccccccCCCccccccCcccHHHHHHHHHHhhhcCccchHHHHHHHHHHHHcC
Q 012143 101 AEEILLRCEADIARPELLSLVQIHHAQCLLPESSGDNSLDKELEPEELEEILSKLKESMQSDTRQAVVWNTLGLILLKSG 180 (470)
Q Consensus 101 al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~~ 180 (470)
+-+..|.. .....|...|. . +++.+++..|+..|+.+++.+|.+..+|..+|.+|...|
T Consensus 552 ~~qka~a~----------~~k~nW~~rG~-------y----yLea~n~h~aV~~fQsALR~dPkD~n~W~gLGeAY~~sG 610 (1238)
T KOG1127|consen 552 AAQKAPAF----------ACKENWVQRGP-------Y----YLEAHNLHGAVCEFQSALRTDPKDYNLWLGLGEAYPESG 610 (1238)
T ss_pred HhhhchHH----------HHHhhhhhccc-------c----ccCccchhhHHHHHHHHhcCCchhHHHHHHHHHHHHhcC
Confidence 54443221 11122222333 3 678888999999999999999999999999999999999
Q ss_pred ChHHHHHHHHHHhhcCCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCChHHHHHHHHHHHhhhcccccccccchh
Q 012143 181 RLQSSISVLSSLLAVDPNNCDCIGNLGIAYFQSGDMEQSAKCFQDLILKDQNHPAALINYAALLLCKYGSVLAGAGANTG 260 (470)
Q Consensus 181 ~~~~A~~~~~~a~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~l~~~~~~~~~~~~~~~~~~~~ 260 (470)
++..|++.|.++..++|.+.-..+..+.+...+|+|.+|+..+...+............++.++.+.
T Consensus 611 ry~~AlKvF~kAs~LrP~s~y~~fk~A~~ecd~GkYkeald~l~~ii~~~s~e~~~q~gLaE~~ir~------------- 677 (1238)
T KOG1127|consen 611 RYSHALKVFTKASLLRPLSKYGRFKEAVMECDNGKYKEALDALGLIIYAFSLERTGQNGLAESVIRD------------- 677 (1238)
T ss_pred ceehHHHhhhhhHhcCcHhHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHH-------------
Confidence 9999999999999999999999999999999999999999999999987777777777777777642
Q ss_pred hhhHHHhcCCHHHHHHHHHHHHh-------cC-CCCHHHHHHHHHHHHH-----------------------cCCh----
Q 012143 261 EGACLDQASAVNVAKECLLAALK-------AD-PKAAHIWANLANAYYL-----------------------TGDH---- 305 (470)
Q Consensus 261 ~~~~~~~~~~~~~A~~~~~~~~~-------~~-p~~~~~~~~la~~~~~-----------------------~g~~---- 305 (470)
+..+.-.|=..+|.+++++.++ .. -++...|..+|.+..- .+..
T Consensus 678 -akd~~~~gf~~kavd~~eksie~f~~~l~h~~~~~~~~Wi~asdac~~f~q~e~~~vn~h~l~il~~q~e~~~~l~~~d 756 (1238)
T KOG1127|consen 678 -AKDSAITGFQKKAVDFFEKSIESFIVSLIHSLQSDRLQWIVASDACYIFSQEEPSIVNMHYLIILSKQLEKTGALKKND 756 (1238)
T ss_pred -HHHHHHHHHhhhhhHHHHHHHHHHHHHHHHhhhhhHHHHHHHhHHHHHHHHhcccchHHHHHHHHHHHHHhcccCcchh
Confidence 2222333444444444444433 22 2233334333332211 1111
Q ss_pred --hHHHHHHHHHHhcCCCcccHHHHHHHHHHHHhhhccCchHHhhhhHHHHHHHhhcCCCCCCCcHHHHHHHHHHHhccc
Q 012143 306 --RSSGKCLEKAAKLEPNCMSTRYAVAVSRIKDAERSQEPTEQLSWAGNEMASILREGDPVQIEPPIAWAGFAAVQKTHH 383 (470)
Q Consensus 306 --~~A~~~~~~a~~~~p~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~ 383 (470)
--+.+++-..+.... ++..|++++...++......+.......+...+...+.. ..++...|..+|.+ ...|
T Consensus 757 ~l~Lg~~c~~~hlsl~~-~~~~WyNLGinylr~f~~l~et~~~~~~Ai~c~KkaV~L----~ann~~~WnaLGVl-sg~g 830 (1238)
T KOG1127|consen 757 LLFLGYECGIAHLSLAI-HMYPWYNLGINYLRYFLLLGETMKDACTAIRCCKKAVSL----CANNEGLWNALGVL-SGIG 830 (1238)
T ss_pred HHHHHHHHhhHHHHHhh-ccchHHHHhHHHHHHHHHcCCcchhHHHHHHHHHHHHHH----hhccHHHHHHHHHh-hccc
Confidence 123444444444332 266788888887776555554444443444444444433 33567899999999 6668
Q ss_pred cHHHHHHHHHH--HhcchhhhhHhhHHHHHHHhccHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHcCChHHHHHHHHHH
Q 012143 384 EVAAAFETEEN--ELSKMEECAGAGESAFLDQASAVNVAKECLLAALKADPKAAHIWANLANAYYLTGDHRSSGKCLEKV 461 (470)
Q Consensus 384 ~~~~A~~~~~~--~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~a 461 (470)
++.-|...|-+ .+.|.....|.++|.++....+++.|...|.++..++|.+...|...+.+....|+.-++...|...
T Consensus 831 nva~aQHCfIks~~sep~~~~~W~NlgvL~l~n~d~E~A~~af~~~qSLdP~nl~~WlG~Ali~eavG~ii~~~~lfaHs 910 (1238)
T KOG1127|consen 831 NVACAQHCFIKSRFSEPTCHCQWLNLGVLVLENQDFEHAEPAFSSVQSLDPLNLVQWLGEALIPEAVGRIIERLILFAHS 910 (1238)
T ss_pred hhhhhhhhhhhhhhccccchhheeccceeEEecccHHHhhHHHHhhhhcCchhhHHHHHHHHhHHHHHHHHHHHHHHHhh
Confidence 99999888887 4557777889999999999999999999999999999999999999999999999999999999885
Q ss_pred HHhh
Q 012143 462 LMVY 465 (470)
Q Consensus 462 l~~~ 465 (470)
.++.
T Consensus 911 ~el~ 914 (1238)
T KOG1127|consen 911 DELC 914 (1238)
T ss_pred HHhh
Confidence 5544
|
|
| >KOG0548 consensus Molecular co-chaperone STI1 [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=99.89 E-value=3.8e-20 Score=162.10 Aligned_cols=286 Identities=15% Similarity=0.174 Sum_probs=204.3
Q ss_pred ccCcccHHHHHHHHHHhhhcCccchHHHHHHHHHHHHcCChHHHHHHHHHHhhcCCCChHHHHHHHHHHHHcCCHHHHHH
Q 012143 142 ELEPEELEEILSKLKESMQSDTRQAVVWNTLGLILLKSGRLQSSISVLSSLLAVDPNNCDCIGNLGIAYFQSGDMEQSAK 221 (470)
Q Consensus 142 ~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~la~~~~~~g~~~~A~~ 221 (470)
.+..|+|+.|+..|..++.++|.+...+.+...+|..+|+|++|++.-.+.++++|+.+..|..+|..+.-+|+|++|+.
T Consensus 12 a~s~~d~~~ai~~~t~ai~l~p~nhvlySnrsaa~a~~~~~~~al~da~k~~~l~p~w~kgy~r~Gaa~~~lg~~~eA~~ 91 (539)
T KOG0548|consen 12 AFSSGDFETAIRLFTEAIMLSPTNHVLYSNRSAAYASLGSYEKALKDATKTRRLNPDWAKGYSRKGAALFGLGDYEEAIL 91 (539)
T ss_pred hcccccHHHHHHHHHHHHccCCCccchhcchHHHHHHHhhHHHHHHHHHHHHhcCCchhhHHHHhHHHHHhcccHHHHHH
Confidence 56889999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHhhCCCChHHHHHHHHHHHhhhcc--cccc---------------------------------------------
Q 012143 222 CFQDLILKDQNHPAALINYAALLLCKYGS--VLAG--------------------------------------------- 254 (470)
Q Consensus 222 ~~~~~l~~~p~~~~~~~~l~~~~~~~~~~--~~~~--------------------------------------------- 254 (470)
.|.+.++.+|++......+..++...... ....
T Consensus 92 ay~~GL~~d~~n~~L~~gl~~a~~~~~~~~~~~~~p~~~~~l~~~p~t~~~~~~~~~~~~l~~~~~~p~~l~~~l~d~r~ 171 (539)
T KOG0548|consen 92 AYSEGLEKDPSNKQLKTGLAQAYLEDYAADQLFTKPYFHEKLANLPLTNYSLSDPAYVKILEIIQKNPTSLKLYLNDPRL 171 (539)
T ss_pred HHHHHhhcCCchHHHHHhHHHhhhHHHHhhhhccCcHHHHHhhcChhhhhhhccHHHHHHHHHhhcCcHhhhcccccHHH
Confidence 99999999999999888888776322100 0000
Q ss_pred ----------------------------------------------------cccchhhhhHHHhcCCHHHHHHHHHHHH
Q 012143 255 ----------------------------------------------------AGANTGEGACLDQASAVNVAKECLLAAL 282 (470)
Q Consensus 255 ----------------------------------------------------~~~~~~~~~~~~~~~~~~~A~~~~~~~~ 282 (470)
+.....+|....+..++..|++.|..++
T Consensus 172 m~a~~~l~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~d~~ee~~~k~~a~~ek~lgnaaykkk~f~~a~q~y~~a~ 251 (539)
T KOG0548|consen 172 MKADGQLKGVDELLFYASGIEILASMAEPCKQEHNGFPIIEDNTEERRVKEKAHKEKELGNAAYKKKDFETAIQHYAKAL 251 (539)
T ss_pred HHHHHHHhcCccccccccccccCCCCCCcccccCCCCCccchhHHHHHHHHhhhHHHHHHHHHHHhhhHHHHHHHHHHHH
Confidence 0011113444444444455555555555
Q ss_pred hcCCCCHHHHHHHHHHHHHcCChhHHHHHHHHHHhcCCCcccHHHHHHHHHHHHhhhccCchHHhhhhHHHHHHHhhcCC
Q 012143 283 KADPKAAHIWANLANAYYLTGDHRSSGKCLEKAAKLEPNCMSTRYAVAVSRIKDAERSQEPTEQLSWAGNEMASILREGD 362 (470)
Q Consensus 283 ~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~p~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 362 (470)
+++ .+...+.+.+.+|+..|.+.+.+....++++.......-...+
T Consensus 252 el~-~~it~~~n~aA~~~e~~~~~~c~~~c~~a~E~gre~rad~klI--------------------------------- 297 (539)
T KOG0548|consen 252 ELA-TDITYLNNIAAVYLERGKYAECIELCEKAVEVGRELRADYKLI--------------------------------- 297 (539)
T ss_pred hHh-hhhHHHHHHHHHHHhccHHHHhhcchHHHHHHhHHHHHHHHHH---------------------------------
Confidence 544 4444444455555555555444444444443322211111111
Q ss_pred CCCCCcHHHHHHHHHHHhccccHHHHHHHHHHHhc----------------------------chhhhhHhhHHHHHHHh
Q 012143 363 PVQIEPPIAWAGFAAVQKTHHEVAAAFETEENELS----------------------------KMEECAGAGESAFLDQA 414 (470)
Q Consensus 363 ~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~----------------------------~~~~~~~~~l~~~~~~~ 414 (470)
......+|..+...++++.++..|.+.+. |.-......-|..++..
T Consensus 298 ------ak~~~r~g~a~~k~~~~~~ai~~~~kaLte~Rt~~~ls~lk~~Ek~~k~~e~~a~~~pe~A~e~r~kGne~Fk~ 371 (539)
T KOG0548|consen 298 ------AKALARLGNAYTKREDYEGAIKYYQKALTEHRTPDLLSKLKEAEKALKEAERKAYINPEKAEEEREKGNEAFKK 371 (539)
T ss_pred ------HHHHHHhhhhhhhHHhHHHHHHHHHHHhhhhcCHHHHHHHHHHHHHHHHHHHHHhhChhHHHHHHHHHHHHHhc
Confidence 11222344455555555555555544332 22222233668899999
Q ss_pred ccHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHcCChHHHHHHHHHHHHhhcc
Q 012143 415 SAVNVAKECLLAALKADPKAAHIWANLANAYYLTGDHRSSGKCLEKVLMVYCS 467 (470)
Q Consensus 415 ~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~ 467 (470)
|+|..|+..|.+++..+|+++..|.+.|-||.++|++..|+...++++++-|+
T Consensus 372 gdy~~Av~~YteAIkr~P~Da~lYsNRAac~~kL~~~~~aL~Da~~~ieL~p~ 424 (539)
T KOG0548|consen 372 GDYPEAVKHYTEAIKRDPEDARLYSNRAACYLKLGEYPEALKDAKKCIELDPN 424 (539)
T ss_pred cCHHHHHHHHHHHHhcCCchhHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCch
Confidence 99999999999999999999999999999999999999999999999998664
|
|
| >KOG1125 consensus TPR repeat-containing protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.88 E-value=1.2e-21 Score=172.72 Aligned_cols=235 Identities=20% Similarity=0.277 Sum_probs=174.9
Q ss_pred cccCcccHHHHHHHHHHhhhcCccchHHHHHHHHHHHHcCChHHHHHHHHHHhhcCCCChHHHHHHHHHHHHcCCHHHHH
Q 012143 141 KELEPEELEEILSKLKESMQSDTRQAVVWNTLGLILLKSGRLQSSISVLSSLLAVDPNNCDCIGNLGIAYFQSGDMEQSA 220 (470)
Q Consensus 141 ~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~la~~~~~~g~~~~A~ 220 (470)
.+++.|++.+|.-.|+.++..+|.+.++|..||.+....++-..|+..++++++++|++..++..||..|...|.-.+|.
T Consensus 294 ~lm~nG~L~~A~LafEAAVkqdP~haeAW~~LG~~qaENE~E~~ai~AL~rcl~LdP~NleaLmaLAVSytNeg~q~~Al 373 (579)
T KOG1125|consen 294 NLMKNGDLSEAALAFEAAVKQDPQHAEAWQKLGITQAENENEQNAISALRRCLELDPTNLEALMALAVSYTNEGLQNQAL 373 (579)
T ss_pred HHHhcCCchHHHHHHHHHHhhChHHHHHHHHhhhHhhhccchHHHHHHHHHHHhcCCccHHHHHHHHHHHhhhhhHHHHH
Confidence 47789999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHhhCCCChHHHHHHHHHHHhhhcccccccccchhhhhHHHhcCCHHHHHHHHHHHHhcCC--CCHHHHHHHHHH
Q 012143 221 KCFQDLILKDQNHPAALINYAALLLCKYGSVLAGAGANTGEGACLDQASAVNVAKECLLAALKADP--KAAHIWANLANA 298 (470)
Q Consensus 221 ~~~~~~l~~~p~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~p--~~~~~~~~la~~ 298 (470)
.++.+.+...|........--.... ...........+..-.+.|..+....| .+++++..||.+
T Consensus 374 ~~L~~Wi~~~p~y~~l~~a~~~~~~--------------~~~~s~~~~~~l~~i~~~fLeaa~~~~~~~DpdvQ~~LGVL 439 (579)
T KOG1125|consen 374 KMLDKWIRNKPKYVHLVSAGENEDF--------------ENTKSFLDSSHLAHIQELFLEAARQLPTKIDPDVQSGLGVL 439 (579)
T ss_pred HHHHHHHHhCccchhccccCccccc--------------cCCcCCCCHHHHHHHHHHHHHHHHhCCCCCChhHHhhhHHH
Confidence 9999999887754322110000000 000000112234455667777777788 689999999999
Q ss_pred HHHcCChhHHHHHHHHHHhcCCCcccHHHHHHHHHHHHhhhccCchHHhhhhHHHHHHHhhcCCCCCCCcHHHHHHHHHH
Q 012143 299 YYLTGDHRSSGKCLEKAAKLEPNCMSTRYAVAVSRIKDAERSQEPTEQLSWAGNEMASILREGDPVQIEPPIAWAGFAAV 378 (470)
Q Consensus 299 ~~~~g~~~~A~~~~~~a~~~~p~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~ 378 (470)
|...|+|++|+.+|+.++...|++.. .|..+|-.
T Consensus 440 y~ls~efdraiDcf~~AL~v~Pnd~~----------------------------------------------lWNRLGAt 473 (579)
T KOG1125|consen 440 YNLSGEFDRAVDCFEAALQVKPNDYL----------------------------------------------LWNRLGAT 473 (579)
T ss_pred HhcchHHHHHHHHHHHHHhcCCchHH----------------------------------------------HHHHhhHH
Confidence 99999999999999999999999653 44444444
Q ss_pred HhccccHHHHHHHHHHHhcchhhhhHhhHHHHHHHhccHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHcCChHHHHHHH
Q 012143 379 QKTHHEVAAAFETEENELSKMEECAGAGESAFLDQASAVNVAKECLLAALKADPKAAHIWANLANAYYLTGDHRSSGKCL 458 (470)
Q Consensus 379 ~~~~~~~~~A~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~ 458 (470)
+. ...+..+|+..|.+|+++.|..+.++++||.++..+|.|++|+++|
T Consensus 474 LA--------------------------------N~~~s~EAIsAY~rALqLqP~yVR~RyNlgIS~mNlG~ykEA~~hl 521 (579)
T KOG1125|consen 474 LA--------------------------------NGNRSEEAISAYNRALQLQPGYVRVRYNLGISCMNLGAYKEAVKHL 521 (579)
T ss_pred hc--------------------------------CCcccHHHHHHHHHHHhcCCCeeeeehhhhhhhhhhhhHHHHHHHH
Confidence 44 4444555666666666666666666666666666666666666666
Q ss_pred HHHHHhhcc
Q 012143 459 EKVLMVYCS 467 (470)
Q Consensus 459 ~~al~~~~~ 467 (470)
-.||.+-++
T Consensus 522 L~AL~mq~k 530 (579)
T KOG1125|consen 522 LEALSMQRK 530 (579)
T ss_pred HHHHHhhhc
Confidence 666655543
|
|
| >PLN03081 pentatricopeptide (PPR) repeat-containing protein; Provisional | Back alignment and domain information |
|---|
Probab=99.88 E-value=4.1e-20 Score=182.51 Aligned_cols=380 Identities=11% Similarity=0.034 Sum_probs=259.6
Q ss_pred cchhhhcccchhhhhcChhhHHHHHHHHHHhCCCChhHHHHHHHHHHHhCChhHHHHHHHHHHHHHhhhhcccchhhhHH
Q 012143 40 DGDQSGLGTSSSSREEKVSSLKTGLVHVARKMPKNAHAHFLLGLMYQRLGQPLKAVSSYEKAEEILLRCEADIARPELLS 119 (470)
Q Consensus 40 ~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~ 119 (470)
...+..+... +.+.|+++.|.+.|++..+ .+...|..+...|.+.|++++|+..|++..+..+.++. ..+..
T Consensus 158 ~~~~n~Li~~-y~k~g~~~~A~~lf~~m~~---~~~~t~n~li~~~~~~g~~~~A~~lf~~M~~~g~~p~~----~t~~~ 229 (697)
T PLN03081 158 QYMMNRVLLM-HVKCGMLIDARRLFDEMPE---RNLASWGTIIGGLVDAGNYREAFALFREMWEDGSDAEP----RTFVV 229 (697)
T ss_pred hHHHHHHHHH-HhcCCCHHHHHHHHhcCCC---CCeeeHHHHHHHHHHCcCHHHHHHHHHHHHHhCCCCCh----hhHHH
Confidence 4455666666 7888899999999987642 35678899999999999999999999999876443221 11111
Q ss_pred HHHHhhhccccc---------cc--------cCCCccccccCcccHHHHHHHHHHhhhcCccchHHHHHHHHHHHHcCCh
Q 012143 120 LVQIHHAQCLLP---------ES--------SGDNSLDKELEPEELEEILSKLKESMQSDTRQAVVWNTLGLILLKSGRL 182 (470)
Q Consensus 120 ~~~~~~~~~~~~---------~~--------~~~~~~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~~~~ 182 (470)
....+...+.+. .. ......+.|.+.|++++|...|+++.. .+..+|..+...|.+.|++
T Consensus 230 ll~a~~~~~~~~~~~~l~~~~~~~g~~~d~~~~n~Li~~y~k~g~~~~A~~vf~~m~~---~~~vt~n~li~~y~~~g~~ 306 (697)
T PLN03081 230 MLRASAGLGSARAGQQLHCCVLKTGVVGDTFVSCALIDMYSKCGDIEDARCVFDGMPE---KTTVAWNSMLAGYALHGYS 306 (697)
T ss_pred HHHHHhcCCcHHHHHHHHHHHHHhCCCccceeHHHHHHHHHHCCCHHHHHHHHHhCCC---CChhHHHHHHHHHHhCCCH
Confidence 111110000000 00 000012235566777777777776642 3556777777777777777
Q ss_pred HHHHHHHHHHhhcC-CCChHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC-CCChHHHHHHHHHHHhhhcccccccccchh
Q 012143 183 QSSISVLSSLLAVD-PNNCDCIGNLGIAYFQSGDMEQSAKCFQDLILKD-QNHPAALINYAALLLCKYGSVLAGAGANTG 260 (470)
Q Consensus 183 ~~A~~~~~~a~~~~-~~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~-p~~~~~~~~l~~~~~~~~~~~~~~~~~~~~ 260 (470)
++|+..|++..+.. ..+...+..+...+.+.|++++|.+.+..+++.. +.+...+..+...|
T Consensus 307 ~eA~~lf~~M~~~g~~pd~~t~~~ll~a~~~~g~~~~a~~i~~~m~~~g~~~d~~~~~~Li~~y---------------- 370 (697)
T PLN03081 307 EEALCLYYEMRDSGVSIDQFTFSIMIRIFSRLALLEHAKQAHAGLIRTGFPLDIVANTALVDLY---------------- 370 (697)
T ss_pred HHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhccchHHHHHHHHHHHHhCCCCCeeehHHHHHHH----------------
Confidence 77777777765532 1234566777777777777777777777776654 33444455555554
Q ss_pred hhhHHHhcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCChhHHHHHHHHHHhcC--CCcccHHHHHHHHHHHHhh
Q 012143 261 EGACLDQASAVNVAKECLLAALKADPKAAHIWANLANAYYLTGDHRSSGKCLEKAAKLE--PNCMSTRYAVAVSRIKDAE 338 (470)
Q Consensus 261 ~~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~--p~~~~~~~~l~~~~~~~~~ 338 (470)
.+.|++++|...|++..+ | +...|..+...|.+.|+.++|++.|++..... |+... +...+. +.
T Consensus 371 -----~k~G~~~~A~~vf~~m~~--~-d~~t~n~lI~~y~~~G~~~~A~~lf~~M~~~g~~Pd~~T--~~~ll~----a~ 436 (697)
T PLN03081 371 -----SKWGRMEDARNVFDRMPR--K-NLISWNALIAGYGNHGRGTKAVEMFERMIAEGVAPNHVT--FLAVLS----AC 436 (697)
T ss_pred -----HHCCCHHHHHHHHHhCCC--C-CeeeHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCCHHH--HHHHHH----HH
Confidence 489999999999998754 3 57889999999999999999999999988743 44222 211111 11
Q ss_pred hccCchHHhhhhHHHHHHHhhcCCCCCCCcHHHHHHHHHHHhccccHHHHHHHHHHHhcchhhhhHhhHHHHHHHhccHH
Q 012143 339 RSQEPTEQLSWAGNEMASILREGDPVQIEPPIAWAGFAAVQKTHHEVAAAFETEENELSKMEECAGAGESAFLDQASAVN 418 (470)
Q Consensus 339 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~ 418 (470)
......+.....+..+... ....| +...|..+...+.+.|++++|.+.+.+.....+...|..+...+...|+++
T Consensus 437 ~~~g~~~~a~~~f~~m~~~----~g~~p-~~~~y~~li~~l~r~G~~~eA~~~~~~~~~~p~~~~~~~Ll~a~~~~g~~~ 511 (697)
T PLN03081 437 RYSGLSEQGWEIFQSMSEN----HRIKP-RAMHYACMIELLGREGLLDEAYAMIRRAPFKPTVNMWAALLTACRIHKNLE 511 (697)
T ss_pred hcCCcHHHHHHHHHHHHHh----cCCCC-CccchHhHHHHHHhcCCHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCcH
Confidence 1112222222222222211 12222 235788999999999999999999987544455567889999999999999
Q ss_pred HHHHHHHHHHhcCCCcHHHHHHHHHHHHHcCChHHHHHHHHHHHHhh
Q 012143 419 VAKECLLAALKADPKAAHIWANLANAYYLTGDHRSSGKCLEKVLMVY 465 (470)
Q Consensus 419 ~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~ 465 (470)
.|...+++.+++.|++...|..++.+|...|++++|.+.++++.+.-
T Consensus 512 ~a~~~~~~l~~~~p~~~~~y~~L~~~y~~~G~~~~A~~v~~~m~~~g 558 (697)
T PLN03081 512 LGRLAAEKLYGMGPEKLNNYVVLLNLYNSSGRQAEAAKVVETLKRKG 558 (697)
T ss_pred HHHHHHHHHhCCCCCCCcchHHHHHHHHhCCCHHHHHHHHHHHHHcC
Confidence 99999999999999999999999999999999999999999877653
|
|
| >KOG2003 consensus TPR repeat-containing protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.88 E-value=5.2e-20 Score=157.76 Aligned_cols=334 Identities=16% Similarity=0.149 Sum_probs=243.4
Q ss_pred hhhhhhhhhhhHHHHHHHHHHHHhcCCCCcchhhhcccchhhhhcChhhHHHHHHHHHHhC--------------CCChh
Q 012143 11 EGKKINKLGKCRSRISSKMDSALEFGVDADGDQSGLGTSSSSREEKVSSLKTGLVHVARKM--------------PKNAH 76 (470)
Q Consensus 11 ~~~~~~~~g~~~~a~~~~~~~~l~~~p~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~--------------p~~~~ 76 (470)
.|..+...|.+..++ ..|+.+.+..|+...++. +-.+ ++.-|+-+...+.|.+.+... |++.-
T Consensus 282 igvtfiq~gqy~dai-nsfdh~m~~~pn~~a~~n-l~i~-~f~i~d~ekmkeaf~kli~ip~~~dddkyi~~~ddp~~~l 358 (840)
T KOG2003|consen 282 IGVTFIQAGQYDDAI-NSFDHCMEEAPNFIAALN-LIIC-AFAIGDAEKMKEAFQKLIDIPGEIDDDKYIKEKDDPDDNL 358 (840)
T ss_pred cCeeEEecccchhhH-hhHHHHHHhCccHHhhhh-hhhh-heecCcHHHHHHHHHHHhcCCCCCCcccccCCcCCcchHH
Confidence 455666788899999 899999998887665443 3344 556666677777777665321 11100
Q ss_pred --------------------------------------------------------------HHHHHHHHHHHhCChhHH
Q 012143 77 --------------------------------------------------------------AHFLLGLMYQRLGQPLKA 94 (470)
Q Consensus 77 --------------------------------------------------------------~~~~l~~~~~~~g~~~~A 94 (470)
.-...+-.+++.|+++.|
T Consensus 359 l~eai~nd~lk~~ek~~ka~aek~i~ta~kiiapvi~~~fa~g~dwcle~lk~s~~~~la~dlei~ka~~~lk~~d~~~a 438 (840)
T KOG2003|consen 359 LNEAIKNDHLKNMEKENKADAEKAIITAAKIIAPVIAPDFAAGCDWCLESLKASQHAELAIDLEINKAGELLKNGDIEGA 438 (840)
T ss_pred HHHHHhhHHHHHHHHhhhhhHHHHHHHHHHHhccccccchhcccHHHHHHHHHhhhhhhhhhhhhhHHHHHHhccCHHHH
Confidence 001223334555666666
Q ss_pred HHHHHHHHHHHhhhhcccchhhhHHHHHHhhhccccccccCCCccccccCcccHHHHHHHHHHhhhcCccchHHHHHHHH
Q 012143 95 VSSYEKAEEILLRCEADIARPELLSLVQIHHAQCLLPESSGDNSLDKELEPEELEEILSKLKESMQSDTRQAVVWNTLGL 174 (470)
Q Consensus 95 ~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~ 174 (470)
++.++-.-+.+.. ....+-.+++.++...| ..++..|..+...++..+..++.++.+.|.
T Consensus 439 ieilkv~~~kdnk-----------~~saaa~nl~~l~flqg---------gk~~~~aqqyad~aln~dryn~~a~~nkgn 498 (840)
T KOG2003|consen 439 IEILKVFEKKDNK-----------TASAAANNLCALRFLQG---------GKDFADAQQYADIALNIDRYNAAALTNKGN 498 (840)
T ss_pred HHHHHHHHhccch-----------hhHHHhhhhHHHHHHhc---------ccchhHHHHHHHHHhcccccCHHHhhcCCc
Confidence 6655433222111 00111223333332111 246889999999999999999999999999
Q ss_pred HHHHcCChHHHHHHHHHHhhcCCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCChHHHHHHHHHHHhhhcccccc
Q 012143 175 ILLKSGRLQSSISVLSSLLAVDPNNCDCIGNLGIAYFQSGDMEQSAKCFQDLILKDQNHPAALINYAALLLCKYGSVLAG 254 (470)
Q Consensus 175 ~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~l~~~~~~~~~~~~~~ 254 (470)
+-+..|++++|.+.|++++..+.....+++++|..+..+|+.++|+.+|-+.-.+--++..+++.++.+|.
T Consensus 499 ~~f~ngd~dka~~~ykeal~ndasc~ealfniglt~e~~~~ldeald~f~klh~il~nn~evl~qianiye--------- 569 (840)
T KOG2003|consen 499 IAFANGDLDKAAEFYKEALNNDASCTEALFNIGLTAEALGNLDEALDCFLKLHAILLNNAEVLVQIANIYE--------- 569 (840)
T ss_pred eeeecCcHHHHHHHHHHHHcCchHHHHHHHHhcccHHHhcCHHHHHHHHHHHHHHHHhhHHHHHHHHHHHH---------
Confidence 99999999999999999999999999999999999999999999999999987777777777777777765
Q ss_pred cccchhhhhHHHhcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCChhHHHHHHHHHHhcCCCcccHHHHHHHHHH
Q 012143 255 AGANTGEGACLDQASAVNVAKECLLAALKADPKAAHIWANLANAYYLTGDHRSSGKCLEKAAKLEPNCMSTRYAVAVSRI 334 (470)
Q Consensus 255 ~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~p~~~~~~~~l~~~~~ 334 (470)
...+..+|++++.++..+-|++|.++..||.+|-+.|+-.+|..++-...+..|.+....-.++...+
T Consensus 570 ------------~led~aqaie~~~q~~slip~dp~ilskl~dlydqegdksqafq~~ydsyryfp~nie~iewl~ayyi 637 (840)
T KOG2003|consen 570 ------------LLEDPAQAIELLMQANSLIPNDPAILSKLADLYDQEGDKSQAFQCHYDSYRYFPCNIETIEWLAAYYI 637 (840)
T ss_pred ------------HhhCHHHHHHHHHHhcccCCCCHHHHHHHHHHhhcccchhhhhhhhhhcccccCcchHHHHHHHHHHH
Confidence 68899999999999999999999999999999999999999999999999999998776655555444
Q ss_pred HHhhhccCchHHhhhhHHHHHHHhhcCCCCCCCcHHHHHHHHHHHhccccHHHHHHHHHHHhcchh
Q 012143 335 KDAERSQEPTEQLSWAGNEMASILREGDPVQIEPPIAWAGFAAVQKTHHEVAAAFETEENELSKME 400 (470)
Q Consensus 335 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~ 400 (470)
... ..+.....+.....+.|.........+.++.+.|+|++|+..|+......+
T Consensus 638 dtq------------f~ekai~y~ekaaliqp~~~kwqlmiasc~rrsgnyqka~d~yk~~hrkfp 691 (840)
T KOG2003|consen 638 DTQ------------FSEKAINYFEKAALIQPNQSKWQLMIASCFRRSGNYQKAFDLYKDIHRKFP 691 (840)
T ss_pred hhH------------HHHHHHHHHHHHHhcCccHHHHHHHHHHHHHhcccHHHHHHHHHHHHHhCc
Confidence 311 112233344444555666667777889999999999999999998655333
|
|
| >PRK10747 putative protoheme IX biogenesis protein; Provisional | Back alignment and domain information |
|---|
Probab=99.88 E-value=1.8e-19 Score=164.89 Aligned_cols=257 Identities=13% Similarity=0.054 Sum_probs=163.9
Q ss_pred CcccHHHHHHHHHHhhhcCccchH-HHHHHHHHHHHcCChHHHHHHHHHHhhcCCCChHHHHHHHHHHHHcCCHHHHHHH
Q 012143 144 EPEELEEILSKLKESMQSDTRQAV-VWNTLGLILLKSGRLQSSISVLSSLLAVDPNNCDCIGNLGIAYFQSGDMEQSAKC 222 (470)
Q Consensus 144 ~~~~~~~A~~~~~~~~~~~p~~~~-~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~la~~~~~~g~~~~A~~~ 222 (470)
..|+++.|..++.++.+.+|++.. .....+.++...|++++|+..++++.+.+|+++.++..++.+|...|++++|++.
T Consensus 130 ~~g~~~~A~~~l~~A~~~~~~~~~~~~l~~a~l~l~~g~~~~Al~~l~~~~~~~P~~~~al~ll~~~~~~~gdw~~a~~~ 209 (398)
T PRK10747 130 QRGDEARANQHLERAAELADNDQLPVEITRVRIQLARNENHAARHGVDKLLEVAPRHPEVLRLAEQAYIRTGAWSSLLDI 209 (398)
T ss_pred HCCCHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHhHHHHHHH
Confidence 344555555555555555555432 2233467777777777777777777777777777777777777777777777777
Q ss_pred HHHHHhhCCCChHHHH---HHHHHHHhhhcccccccccchhhhhHHHhcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHH
Q 012143 223 FQDLILKDQNHPAALI---NYAALLLCKYGSVLAGAGANTGEGACLDQASAVNVAKECLLAALKADPKAAHIWANLANAY 299 (470)
Q Consensus 223 ~~~~l~~~p~~~~~~~---~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~la~~~ 299 (470)
+.+..+..+.++.... ..+.+... .. .....+.+...+..+...+..|+++.+...++..+
T Consensus 210 l~~l~k~~~~~~~~~~~l~~~a~~~l~---------------~~-~~~~~~~~~l~~~w~~lp~~~~~~~~~~~~~A~~l 273 (398)
T PRK10747 210 LPSMAKAHVGDEEHRAMLEQQAWIGLM---------------DQ-AMADQGSEGLKRWWKNQSRKTRHQVALQVAMAEHL 273 (398)
T ss_pred HHHHHHcCCCCHHHHHHHHHHHHHHHH---------------HH-HHHhcCHHHHHHHHHhCCHHHhCCHHHHHHHHHHH
Confidence 7776665554433211 11111100 00 00122334444444444444566777777777777
Q ss_pred HHcCChhHHHHHHHHHHhcCCCcccHHHHHHHHHHHHhhhccCchHHhhhhHHHHHHHhhcCCCCCCCcHHHHHHHHHHH
Q 012143 300 YLTGDHRSSGKCLEKAAKLEPNCMSTRYAVAVSRIKDAERSQEPTEQLSWAGNEMASILREGDPVQIEPPIAWAGFAAVQ 379 (470)
Q Consensus 300 ~~~g~~~~A~~~~~~a~~~~p~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~ 379 (470)
...|+.++|...++++++..|+ +..... .+ .
T Consensus 274 ~~~g~~~~A~~~L~~~l~~~~~-~~l~~l----------------------------------------------~~--~ 304 (398)
T PRK10747 274 IECDDHDTAQQIILDGLKRQYD-ERLVLL----------------------------------------------IP--R 304 (398)
T ss_pred HHCCCHHHHHHHHHHHHhcCCC-HHHHHH----------------------------------------------Hh--h
Confidence 7777777777777777774433 211110 00 1
Q ss_pred hccccHHHHHHHHHHHhc--chhhhhHhhHHHHHHHhccHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHcCChHHHHHH
Q 012143 380 KTHHEVAAAFETEENELS--KMEECAGAGESAFLDQASAVNVAKECLLAALKADPKAAHIWANLANAYYLTGDHRSSGKC 457 (470)
Q Consensus 380 ~~~~~~~~A~~~~~~~~~--~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~ 457 (470)
...++.+++++..+..+. |.++..+..+|.++...+++++|..+|+++++..|++.. +..++.++.++|+.++|..+
T Consensus 305 l~~~~~~~al~~~e~~lk~~P~~~~l~l~lgrl~~~~~~~~~A~~~le~al~~~P~~~~-~~~La~~~~~~g~~~~A~~~ 383 (398)
T PRK10747 305 LKTNNPEQLEKVLRQQIKQHGDTPLLWSTLGQLLMKHGEWQEASLAFRAALKQRPDAYD-YAWLADALDRLHKPEEAAAM 383 (398)
T ss_pred ccCCChHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCHHH-HHHHHHHHHHcCCHHHHHHH
Confidence 122555556666555333 444556677888999999999999999999999998754 66899999999999999999
Q ss_pred HHHHHHhhc
Q 012143 458 LEKVLMVYC 466 (470)
Q Consensus 458 ~~~al~~~~ 466 (470)
|++++.+..
T Consensus 384 ~~~~l~~~~ 392 (398)
T PRK10747 384 RRDGLMLTL 392 (398)
T ss_pred HHHHHhhhc
Confidence 999998763
|
|
| >PLN03077 Protein ECB2; Provisional | Back alignment and domain information |
|---|
Probab=99.87 E-value=3.9e-18 Score=172.65 Aligned_cols=382 Identities=11% Similarity=0.018 Sum_probs=270.4
Q ss_pred cchhhhcccchhhhhcChhhHHHHHHHHHHhCCCChhHHHHHHHHHHHhCChhHHHHHHHHHHHHHhhhhcccchhhhHH
Q 012143 40 DGDQSGLGTSSSSREEKVSSLKTGLVHVARKMPKNAHAHFLLGLMYQRLGQPLKAVSSYEKAEEILLRCEADIARPELLS 119 (470)
Q Consensus 40 ~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~ 119 (470)
...+..+... +.+.|++++|.+.|++.. ..+...|..+...|.+.|++++|+..|++..+....+ +...
T Consensus 323 ~~~~n~Li~~-y~k~g~~~~A~~vf~~m~---~~d~~s~n~li~~~~~~g~~~~A~~lf~~M~~~g~~P-------d~~t 391 (857)
T PLN03077 323 VSVCNSLIQM-YLSLGSWGEAEKVFSRME---TKDAVSWTAMISGYEKNGLPDKALETYALMEQDNVSP-------DEIT 391 (857)
T ss_pred hHHHHHHHHH-HHhcCCHHHHHHHHhhCC---CCCeeeHHHHHHHHHhCCCHHHHHHHHHHHHHhCCCC-------Ccee
Confidence 3445555555 777888888888888753 3456778888888888888888888888876653222 1111
Q ss_pred HHHHhhhccccccccCCCccccccCcccHHHHHHHHHHhhhcCc-cchHHHHHHHHHHHHcCChHHHHHHHHHHhhcCCC
Q 012143 120 LVQIHHAQCLLPESSGDNSLDKELEPEELEEILSKLKESMQSDT-RQAVVWNTLGLILLKSGRLQSSISVLSSLLAVDPN 198 (470)
Q Consensus 120 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~p-~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~ 198 (470)
...+... +.+.|++++|.+++..+.+... .+..++..+...|.+.|++++|.+.|++..+ .
T Consensus 392 ~~~ll~a---------------~~~~g~~~~a~~l~~~~~~~g~~~~~~~~n~Li~~y~k~g~~~~A~~vf~~m~~---~ 453 (857)
T PLN03077 392 IASVLSA---------------CACLGDLDVGVKLHELAERKGLISYVVVANALIEMYSKCKCIDKALEVFHNIPE---K 453 (857)
T ss_pred HHHHHHH---------------HhccchHHHHHHHHHHHHHhCCCcchHHHHHHHHHHHHcCCHHHHHHHHHhCCC---C
Confidence 1111111 2356778999999998887643 3466788899999999999999999998543 4
Q ss_pred ChHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCChHHHHHHHHHHHhhhcc--------------cccccccchhhhhH
Q 012143 199 NCDCIGNLGIAYFQSGDMEQSAKCFQDLILKDQNHPAALINYAALLLCKYGS--------------VLAGAGANTGEGAC 264 (470)
Q Consensus 199 ~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~l~~~~~~~~~~--------------~~~~~~~~~~~~~~ 264 (470)
+...|..+...|.+.|++++|+..|+++....+.+...+..+...+.....- ..........+-..
T Consensus 454 d~vs~~~mi~~~~~~g~~~eA~~lf~~m~~~~~pd~~t~~~lL~a~~~~g~l~~~~~i~~~~~~~g~~~~~~~~naLi~~ 533 (857)
T PLN03077 454 DVISWTSIIAGLRLNNRCFEALIFFRQMLLTLKPNSVTLIAALSACARIGALMCGKEIHAHVLRTGIGFDGFLPNALLDL 533 (857)
T ss_pred CeeeHHHHHHHHHHCCCHHHHHHHHHHHHhCCCCCHhHHHHHHHHHhhhchHHHhHHHHHHHHHhCCCccceechHHHHH
Confidence 5678899999999999999999999999864333443333333222211000 00112233445678
Q ss_pred HHhcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCChhHHHHHHHHHHhc--CCCcccHHHHHHHHHHHHhhhccC
Q 012143 265 LDQASAVNVAKECLLAALKADPKAAHIWANLANAYYLTGDHRSSGKCLEKAAKL--EPNCMSTRYAVAVSRIKDAERSQE 342 (470)
Q Consensus 265 ~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~--~p~~~~~~~~l~~~~~~~~~~~~~ 342 (470)
|.+.|++++|...|+.. +.+...|..+...|...|+.++|+..|++..+. .|+.......+. ... ...
T Consensus 534 y~k~G~~~~A~~~f~~~----~~d~~s~n~lI~~~~~~G~~~~A~~lf~~M~~~g~~Pd~~T~~~ll~--a~~----~~g 603 (857)
T PLN03077 534 YVRCGRMNYAWNQFNSH----EKDVVSWNILLTGYVAHGKGSMAVELFNRMVESGVNPDEVTFISLLC--ACS----RSG 603 (857)
T ss_pred HHHcCCHHHHHHHHHhc----CCChhhHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCcccHHHHHH--HHh----hcC
Confidence 89999999999999986 456889999999999999999999999998874 455443222111 111 111
Q ss_pred chHHhhhhHHHHHHHhhcCCCCCCCcHHHHHHHHHHHhccccHHHHHHHHHHHhcchhhhhHhhHHHHHHHhccHHHHHH
Q 012143 343 PTEQLSWAGNEMASILREGDPVQIEPPIAWAGFAAVQKTHHEVAAAFETEENELSKMEECAGAGESAFLDQASAVNVAKE 422 (470)
Q Consensus 343 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~ 422 (470)
..++....+..+.. ...+.| +...|..+...+.+.|++++|.+.+++.--..+...|..+-..+...++.+.+..
T Consensus 604 ~v~ea~~~f~~M~~----~~gi~P-~~~~y~~lv~~l~r~G~~~eA~~~~~~m~~~pd~~~~~aLl~ac~~~~~~e~~e~ 678 (857)
T PLN03077 604 MVTQGLEYFHSMEE----KYSITP-NLKHYACVVDLLGRAGKLTEAYNFINKMPITPDPAVWGALLNACRIHRHVELGEL 678 (857)
T ss_pred hHHHHHHHHHHHHH----HhCCCC-chHHHHHHHHHHHhCCCHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCChHHHHH
Confidence 12222222222221 112222 3468999999999999999999999885333445667777778888899999999
Q ss_pred HHHHHHhcCCCcHHHHHHHHHHHHHcCChHHHHHHHHHHHHhh
Q 012143 423 CLLAALKADPKAAHIWANLANAYYLTGDHRSSGKCLEKVLMVY 465 (470)
Q Consensus 423 ~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~ 465 (470)
..++++++.|+++..+..++.+|...|++++|.+..+...+..
T Consensus 679 ~a~~l~~l~p~~~~~y~ll~n~ya~~g~~~~a~~vr~~M~~~g 721 (857)
T PLN03077 679 AAQHIFELDPNSVGYYILLCNLYADAGKWDEVARVRKTMRENG 721 (857)
T ss_pred HHHHHHhhCCCCcchHHHHHHHHHHCCChHHHHHHHHHHHHcC
Confidence 9999999999999999999999999999999999998876643
|
|
| >TIGR02521 type_IV_pilW type IV pilus biogenesis/stability protein PilW | Back alignment and domain information |
|---|
Probab=99.87 E-value=1.8e-19 Score=154.53 Aligned_cols=203 Identities=19% Similarity=0.200 Sum_probs=179.5
Q ss_pred chHHHHHHHHHHHHcCChHHHHHHHHHHhhcCCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCChHHHHHHHHHH
Q 012143 165 QAVVWNTLGLILLKSGRLQSSISVLSSLLAVDPNNCDCIGNLGIAYFQSGDMEQSAKCFQDLILKDQNHPAALINYAALL 244 (470)
Q Consensus 165 ~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~l~~~~ 244 (470)
.+..+..+|.++...|++++|+..++++++.+|++..++..+|.++...|++++|+..+++++...|.+...+..++.++
T Consensus 30 ~~~~~~~la~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~ 109 (234)
T TIGR02521 30 AAKIRVQLALGYLEQGDLEVAKENLDKALEHDPDDYLAYLALALYYQQLGELEKAEDSFRRALTLNPNNGDVLNNYGTFL 109 (234)
T ss_pred HHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHH
Confidence 46789999999999999999999999999999999999999999999999999999999999999999999888888887
Q ss_pred HhhhcccccccccchhhhhHHHhcCCHHHHHHHHHHHHhcC--CCCHHHHHHHHHHHHHcCChhHHHHHHHHHHhcCCCc
Q 012143 245 LCKYGSVLAGAGANTGEGACLDQASAVNVAKECLLAALKAD--PKAAHIWANLANAYYLTGDHRSSGKCLEKAAKLEPNC 322 (470)
Q Consensus 245 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~--p~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~p~~ 322 (470)
. ..|++++|+..+.+++... |.....+..+|.++...|++++|...+.+++...|++
T Consensus 110 ~---------------------~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~ 168 (234)
T TIGR02521 110 C---------------------QQGKYEQAMQQFEQAIEDPLYPQPARSLENAGLCALKAGDFDKAEKYLTRALQIDPQR 168 (234)
T ss_pred H---------------------HcccHHHHHHHHHHHHhccccccchHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcCC
Confidence 7 7999999999999999854 4567889999999999999999999999999998875
Q ss_pred ccHHHHHHHHHHHHhhhccCchHHhhhhHHHHHHHhhcCCCCCCCcHHHHHHHHHHHhccccHHHHHHHHHHHhcchhhh
Q 012143 323 MSTRYAVAVSRIKDAERSQEPTEQLSWAGNEMASILREGDPVQIEPPIAWAGFAAVQKTHHEVAAAFETEENELSKMEEC 402 (470)
Q Consensus 323 ~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~ 402 (470)
...+.
T Consensus 169 ~~~~~--------------------------------------------------------------------------- 173 (234)
T TIGR02521 169 PESLL--------------------------------------------------------------------------- 173 (234)
T ss_pred hHHHH---------------------------------------------------------------------------
Confidence 43222
Q ss_pred hHhhHHHHHHHhccHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHcCChHHHHHHHHHHHHhhc
Q 012143 403 AGAGESAFLDQASAVNVAKECLLAALKADPKAAHIWANLANAYYLTGDHRSSGKCLEKVLMVYC 466 (470)
Q Consensus 403 ~~~~l~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~ 466 (470)
.+|.++...|++++|+.++++++...|.++..+..++.++...|+.++|..+.+.+...+|
T Consensus 174 ---~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~ 234 (234)
T TIGR02521 174 ---ELAELYYLRGQYKDARAYLERYQQTYNQTAESLWLGIRIARALGDVAAAQRYGAQLQKLFP 234 (234)
T ss_pred ---HHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHhhHHHHHHHHHHHHhhCc
Confidence 2334677788889999999999998888899999999999999999999999888776643
|
Members of this family are designated PilF in ref (PubMed:8973346) and PilW in ref (PubMed:15612916). This outer membrane protein is required both for pilus stability and for pilus function such as adherence to human cells. Members of this family contain copies of the TPR (tetratricopeptide repeat) domain. |
| >PLN03218 maturation of RBCL 1; Provisional | Back alignment and domain information |
|---|
Probab=99.87 E-value=2.1e-17 Score=165.34 Aligned_cols=390 Identities=12% Similarity=0.070 Sum_probs=285.5
Q ss_pred hhhhhhhhHHHHHHHHHHHHhcCCCCcc--hhhhcccchhhhhcChhhHHHHHHHHHHhCCCChhHHHHHHHHHHHhCCh
Q 012143 14 KINKLGKCRSRISSKMDSALEFGVDADG--DQSGLGTSSSSREEKVSSLKTGLVHVARKMPKNAHAHFLLGLMYQRLGQP 91 (470)
Q Consensus 14 ~~~~~g~~~~a~~~~~~~~l~~~p~~~~--~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~l~~~~~~~g~~ 91 (470)
.+.+.|+.+++. ..++...+.+.-... .+..+-.. +...|...+|...++.... | +...+..+-..+...|++
T Consensus 379 ~l~r~G~l~eAl-~Lfd~M~~~gvv~~~~v~~~~li~~-~~~~g~~~eAl~lf~~M~~--p-d~~Tyn~LL~a~~k~g~~ 453 (1060)
T PLN03218 379 RLLRDGRIKDCI-DLLEDMEKRGLLDMDKIYHAKFFKA-CKKQRAVKEAFRFAKLIRN--P-TLSTFNMLMSVCASSQDI 453 (1060)
T ss_pred HHHHCcCHHHHH-HHHHHHHhCCCCCchHHHHHHHHHH-HHHCCCHHHHHHHHHHcCC--C-CHHHHHHHHHHHHhCcCH
Confidence 345668889998 777777665432222 22223334 5677889999998887643 4 567888888899999999
Q ss_pred hHHHHHHHHHHHHHhhhhcccchhhhHHHHHHhhhccccccccCCCccccccCcccHHHHHHHHHHhhhcCc-cchHHHH
Q 012143 92 LKAVSSYEKAEEILLRCEADIARPELLSLVQIHHAQCLLPESSGDNSLDKELEPEELEEILSKLKESMQSDT-RQAVVWN 170 (470)
Q Consensus 92 ~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~p-~~~~~~~ 170 (470)
++|...|+++.+....+ +.. .+..+... +.+.|++++|..+|+++..... .+...|.
T Consensus 454 e~A~~lf~~M~~~Gl~p-------D~~----tynsLI~~-----------y~k~G~vd~A~~vf~eM~~~Gv~PdvvTyn 511 (1060)
T PLN03218 454 DGALRVLRLVQEAGLKA-------DCK----LYTTLIST-----------CAKSGKVDAMFEVFHEMVNAGVEANVHTFG 511 (1060)
T ss_pred HHHHHHHHHHHHcCCCC-------CHH----HHHHHHHH-----------HHhCcCHHHHHHHHHHHHHcCCCCCHHHHH
Confidence 99999999988764332 111 11111111 3467888999999999987653 3678899
Q ss_pred HHHHHHHHcCChHHHHHHHHHHhhc--CCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHhh----CCCChHHHHHHHHHH
Q 012143 171 TLGLILLKSGRLQSSISVLSSLLAV--DPNNCDCIGNLGIAYFQSGDMEQSAKCFQDLILK----DQNHPAALINYAALL 244 (470)
Q Consensus 171 ~l~~~~~~~~~~~~A~~~~~~a~~~--~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~----~p~~~~~~~~l~~~~ 244 (470)
.+...|.+.|++++|+..|++.... .| +...|..+...+.+.|++++|.+.|.++... .|+ ...+..+...+
T Consensus 512 aLI~gy~k~G~~eeAl~lf~~M~~~Gv~P-D~vTYnsLI~a~~k~G~~deA~~lf~eM~~~~~gi~PD-~vTynaLI~ay 589 (1060)
T PLN03218 512 ALIDGCARAGQVAKAFGAYGIMRSKNVKP-DRVVFNALISACGQSGAVDRAFDVLAEMKAETHPIDPD-HITVGALMKAC 589 (1060)
T ss_pred HHHHHHHHCcCHHHHHHHHHHHHHcCCCC-CHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhcCCCCCc-HHHHHHHHHHH
Confidence 9999999999999999999998764 34 4678999999999999999999999998753 343 44555555555
Q ss_pred HhhhcccccccccchhhhhHHHhcCCHHHHHHHHHHHHhcC-CCCHHHHHHHHHHHHHcCChhHHHHHHHHHHhc--CCC
Q 012143 245 LCKYGSVLAGAGANTGEGACLDQASAVNVAKECLLAALKAD-PKAAHIWANLANAYYLTGDHRSSGKCLEKAAKL--EPN 321 (470)
Q Consensus 245 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~-p~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~--~p~ 321 (470)
. +.|++++|.++|+++.+.+ +.+...|..+...|.+.|++++|...|+++.+. .|+
T Consensus 590 ~---------------------k~G~ldeA~elf~~M~e~gi~p~~~tynsLI~ay~k~G~~deAl~lf~eM~~~Gv~PD 648 (1060)
T PLN03218 590 A---------------------NAGQVDRAKEVYQMIHEYNIKGTPEVYTIAVNSCSQKGDWDFALSIYDDMKKKGVKPD 648 (1060)
T ss_pred H---------------------HCCCHHHHHHHHHHHHHcCCCCChHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCC
Confidence 4 7999999999999999876 446889999999999999999999999999876 344
Q ss_pred cccHHHHHHHHHHHHhhhccCchHHhhhhHHHHHHHhhcCCCCCCCcHHHHHHHHHHHhccccHHHHHHHHHHHhc---c
Q 012143 322 CMSTRYAVAVSRIKDAERSQEPTEQLSWAGNEMASILREGDPVQIEPPIAWAGFAAVQKTHHEVAAAFETEENELS---K 398 (470)
Q Consensus 322 ~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~---~ 398 (470)
. ..+...+.. .......+. +...+........ ..+...|..+...|.+.|++++|...|..... .
T Consensus 649 ~--~TynsLI~a----~~k~G~~ee---A~~l~~eM~k~G~---~pd~~tynsLI~ay~k~G~~eeA~~lf~eM~~~g~~ 716 (1060)
T PLN03218 649 E--VFFSALVDV----AGHAGDLDK---AFEILQDARKQGI---KLGTVSYSSLMGACSNAKNWKKALELYEDIKSIKLR 716 (1060)
T ss_pred H--HHHHHHHHH----HHhCCCHHH---HHHHHHHHHHcCC---CCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCC
Confidence 2 122211111 111122222 2222222222221 23456899999999999999999999988543 2
Q ss_pred hhhhhHhhHHHHHHHhccHHHHHHHHHHHHhc--CCCcHHHHHHHHHHHHHcCChHHHHHHHHHHHHhhc
Q 012143 399 MEECAGAGESAFLDQASAVNVAKECLLAALKA--DPKAAHIWANLANAYYLTGDHRSSGKCLEKVLMVYC 466 (470)
Q Consensus 399 ~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~--~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~ 466 (470)
.+...|..+...|.+.|++++|+++|++.... .| +...|..+...+.+.|+.++|...|.++++...
T Consensus 717 PdvvtyN~LI~gy~k~G~~eeAlelf~eM~~~Gi~P-d~~Ty~sLL~a~~k~G~le~A~~l~~~M~k~Gi 785 (1060)
T PLN03218 717 PTVSTMNALITALCEGNQLPKALEVLSEMKRLGLCP-NTITYSILLVASERKDDADVGLDLLSQAKEDGI 785 (1060)
T ss_pred CCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCC-CHHHHHHHHHHHHHCCCHHHHHHHHHHHHHcCC
Confidence 34466889999999999999999999998764 45 456777788899999999999999999987543
|
|
| >KOG0624 consensus dsRNA-activated protein kinase inhibitor P58, contains TPR and DnaJ domains [Defense mechanisms] | Back alignment and domain information |
|---|
Probab=99.86 E-value=1.3e-19 Score=149.66 Aligned_cols=265 Identities=17% Similarity=0.129 Sum_probs=203.0
Q ss_pred HHHHHHHHHhhhcCccchHHHHHHHHHHHHcCChHHHHHHHHHHhhcCCCCh---H------------HHHHHHHHHHHc
Q 012143 149 EEILSKLKESMQSDTRQAVVWNTLGLILLKSGRLQSSISVLSSLLAVDPNNC---D------------CIGNLGIAYFQS 213 (470)
Q Consensus 149 ~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~---~------------~~~~la~~~~~~ 213 (470)
.-|+.-+.++++..|+...+....|.+++++|++++|...|+.++..+|++. + .+......+...
T Consensus 89 k~al~Dl~rVlelKpDF~~ARiQRg~vllK~Gele~A~~DF~~vl~~~~s~~~~~eaqskl~~~~e~~~l~~ql~s~~~~ 168 (504)
T KOG0624|consen 89 KAALQDLSRVLELKPDFMAARIQRGVVLLKQGELEQAEADFDQVLQHEPSNGLVLEAQSKLALIQEHWVLVQQLKSASGS 168 (504)
T ss_pred ccchhhHHHHHhcCccHHHHHHHhchhhhhcccHHHHHHHHHHHHhcCCCcchhHHHHHHHHhHHHHHHHHHHHHHHhcC
Confidence 4444444455555666666677777777777777777777777777777432 1 223334445668
Q ss_pred CCHHHHHHHHHHHHhhCCCChHHHHHHHHHHHhhhcccccccccchhhhhHHHhcCCHHHHHHHHHHHHhcCCCCHHHHH
Q 012143 214 GDMEQSAKCFQDLILKDQNHPAALINYAALLLCKYGSVLAGAGANTGEGACLDQASAVNVAKECLLAALKADPKAAHIWA 293 (470)
Q Consensus 214 g~~~~A~~~~~~~l~~~p~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~ 293 (470)
|+...|++.....+++.|-+...+...+.+|. ..|++..|+.-++.+-++..++.+.++
T Consensus 169 GD~~~ai~~i~~llEi~~Wda~l~~~Rakc~i---------------------~~~e~k~AI~Dlk~askLs~DnTe~~y 227 (504)
T KOG0624|consen 169 GDCQNAIEMITHLLEIQPWDASLRQARAKCYI---------------------AEGEPKKAIHDLKQASKLSQDNTEGHY 227 (504)
T ss_pred CchhhHHHHHHHHHhcCcchhHHHHHHHHHHH---------------------hcCcHHHHHHHHHHHHhccccchHHHH
Confidence 99999999999999999998888877777776 799999999999999999999999999
Q ss_pred HHHHHHHHcCChhHHHHHHHHHHhcCCCcccHHHHHHHHHHHHhhhccCchHHhhhhHHHHHHHhhcCCCCCCCcHHHHH
Q 012143 294 NLANAYYLTGDHRSSGKCLEKAAKLEPNCMSTRYAVAVSRIKDAERSQEPTEQLSWAGNEMASILREGDPVQIEPPIAWA 373 (470)
Q Consensus 294 ~la~~~~~~g~~~~A~~~~~~a~~~~p~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 373 (470)
.++.+++..|+.+.++...+.+++++|++...+-..- .+....+ ..
T Consensus 228 kis~L~Y~vgd~~~sL~~iRECLKldpdHK~Cf~~YK--klkKv~K--------------------------------~l 273 (504)
T KOG0624|consen 228 KISQLLYTVGDAENSLKEIRECLKLDPDHKLCFPFYK--KLKKVVK--------------------------------SL 273 (504)
T ss_pred HHHHHHHhhhhHHHHHHHHHHHHccCcchhhHHHHHH--HHHHHHH--------------------------------HH
Confidence 9999999999999999999999999999765432110 0110000 01
Q ss_pred HHHHHHhccccHHHHHHHHHHHhcchhhh------hHhhHHHHHHHhccHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHH
Q 012143 374 GFAAVQKTHHEVAAAFETEENELSKMEEC------AGAGESAFLDQASAVNVAKECLLAALKADPKAAHIWANLANAYYL 447 (470)
Q Consensus 374 ~l~~~~~~~~~~~~A~~~~~~~~~~~~~~------~~~~l~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~ 447 (470)
.-+......++|.++++..++.+...+.. ..-.+..|+...+++.+|+..+.+++..+|+++.++...|..|..
T Consensus 274 es~e~~ie~~~~t~cle~ge~vlk~ep~~~~ir~~~~r~~c~C~~~d~~~~eAiqqC~evL~~d~~dv~~l~dRAeA~l~ 353 (504)
T KOG0624|consen 274 ESAEQAIEEKHWTECLEAGEKVLKNEPEETMIRYNGFRVLCTCYREDEQFGEAIQQCKEVLDIDPDDVQVLCDRAEAYLG 353 (504)
T ss_pred HHHHHHHhhhhHHHHHHHHHHHHhcCCcccceeeeeeheeeecccccCCHHHHHHHHHHHHhcCchHHHHHHHHHHHHhh
Confidence 11223345678888888888877654442 233666788999999999999999999999999999999999999
Q ss_pred cCChHHHHHHHHHHHHhhccC
Q 012143 448 TGDHRSSGKCLEKVLMVYCSS 468 (470)
Q Consensus 448 ~g~~~~A~~~~~~al~~~~~~ 468 (470)
...|+.|+..|++|.++-++.
T Consensus 354 dE~YD~AI~dye~A~e~n~sn 374 (504)
T KOG0624|consen 354 DEMYDDAIHDYEKALELNESN 374 (504)
T ss_pred hHHHHHHHHHHHHHHhcCccc
Confidence 999999999999999987654
|
|
| >KOG1174 consensus Anaphase-promoting complex (APC), subunit 7 [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=99.86 E-value=5.1e-19 Score=149.77 Aligned_cols=328 Identities=13% Similarity=0.054 Sum_probs=219.8
Q ss_pred HHHhcCCCCcchhh---hcccchhhhhcChhhHHHHHHHHHHhCCCChhHHHHHHHHHHHhCChhHHHHHHHHHHHHHhh
Q 012143 31 SALEFGVDADGDQS---GLGTSSSSREEKVSSLKTGLVHVARKMPKNAHAHFLLGLMYQRLGQPLKAVSSYEKAEEILLR 107 (470)
Q Consensus 31 ~~l~~~p~~~~~~~---~~~~~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~ 107 (470)
.++...|.++..|. ..+.+ +........+..++-.-...-|+|.+.+..+|.+++..|++++|+..|+++..++|.
T Consensus 186 ~~~~~~~~~dwls~wika~Aq~-~~~~hs~a~~t~l~le~~~~lr~NvhLl~~lak~~~~~Gdn~~a~~~Fe~~~~~dpy 264 (564)
T KOG1174|consen 186 HAATVPDHFDWLSKWIKALAQM-FNFKHSDASQTFLMLHDNTTLRCNEHLMMALGKCLYYNGDYFQAEDIFSSTLCANPD 264 (564)
T ss_pred hheecCCCccHHHHHHHHHHHH-HhcccchhhhHHHHHHhhccCCccHHHHHHHhhhhhhhcCchHHHHHHHHHhhCChh
Confidence 33444555544333 23333 334444445555666667778899999999999999999999999999998888655
Q ss_pred hhcccchhhhHHHHHHhhhccccccccCCCccccccCcccHHHHHHHHHHhhhcCccchHHHHHHHHHHHHcCChHHHHH
Q 012143 108 CEADIARPELLSLVQIHHAQCLLPESSGDNSLDKELEPEELEEILSKLKESMQSDTRQAVVWNTLGLILLKSGRLQSSIS 187 (470)
Q Consensus 108 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~~~~~~A~~ 187 (470)
.- .....+ +.+ +-..|++++-.......+..+.....-|+.-+...+..+++..|+.
T Consensus 265 ~i---------~~MD~Y---a~L-----------L~~eg~~e~~~~L~~~Lf~~~~~ta~~wfV~~~~l~~~K~~~rAL~ 321 (564)
T KOG1174|consen 265 NV---------EAMDLY---AVL-----------LGQEGGCEQDSALMDYLFAKVKYTASHWFVHAQLLYDEKKFERALN 321 (564)
T ss_pred hh---------hhHHHH---HHH-----------HHhccCHhhHHHHHHHHHhhhhcchhhhhhhhhhhhhhhhHHHHHH
Confidence 32 111111 111 1234555666666666666665666666666777777777777777
Q ss_pred HHHHHhhcCCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCChHHHHHHHHHHHhhhcccccccccchhhhhHHHh
Q 012143 188 VLSSLLAVDPNNCDCIGNLGIAYFQSGDMEQSAKCFQDLILKDQNHPAALINYAALLLCKYGSVLAGAGANTGEGACLDQ 267 (470)
Q Consensus 188 ~~~~a~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~ 267 (470)
+-+++|+.+|.+..++...|.++...|+.++|+-.|+.+..+.|.....+..+..+|. .
T Consensus 322 ~~eK~I~~~~r~~~alilKG~lL~~~~R~~~A~IaFR~Aq~Lap~rL~~Y~GL~hsYL---------------------A 380 (564)
T KOG1174|consen 322 FVEKCIDSEPRNHEALILKGRLLIALERHTQAVIAFRTAQMLAPYRLEIYRGLFHSYL---------------------A 380 (564)
T ss_pred HHHHHhccCcccchHHHhccHHHHhccchHHHHHHHHHHHhcchhhHHHHHHHHHHHH---------------------h
Confidence 7777777777777777777777777777777777777777777777776666666665 4
Q ss_pred cCCHHHHHHHHHHHHhcCCCCHHHHHHHH-HHHH-HcCChhHHHHHHHHHHhcCCCcccHHHHHHHHHHHHhhhccCchH
Q 012143 268 ASAVNVAKECLLAALKADPKAAHIWANLA-NAYY-LTGDHRSSGKCLEKAAKLEPNCMSTRYAVAVSRIKDAERSQEPTE 345 (470)
Q Consensus 268 ~~~~~~A~~~~~~~~~~~p~~~~~~~~la-~~~~-~~g~~~~A~~~~~~a~~~~p~~~~~~~~l~~~~~~~~~~~~~~~~ 345 (470)
.|++.+|.-.-+.+++.-|.++.++..+| .++. .-.--++|.+.+++++++.|....
T Consensus 381 ~~~~kEA~~~An~~~~~~~~sA~~LtL~g~~V~~~dp~~rEKAKkf~ek~L~~~P~Y~~--------------------- 439 (564)
T KOG1174|consen 381 QKRFKEANALANWTIRLFQNSARSLTLFGTLVLFPDPRMREKAKKFAEKSLKINPIYTP--------------------- 439 (564)
T ss_pred hchHHHHHHHHHHHHHHhhcchhhhhhhcceeeccCchhHHHHHHHHHhhhccCCccHH---------------------
Confidence 67777777777777777777777776665 3332 222345677777777777776432
Q ss_pred HhhhhHHHHHHHhhcCCCCCCCcHHHHHHHHHHHhccccHHHHHHHHHHHhcchhh-hhHhhHHHHHHHhccHHHHHHHH
Q 012143 346 QLSWAGNEMASILREGDPVQIEPPIAWAGFAAVQKTHHEVAAAFETEENELSKMEE-CAGAGESAFLDQASAVNVAKECL 424 (470)
Q Consensus 346 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~-~~~~~l~~~~~~~~~~~~A~~~~ 424 (470)
+...++.++...|.+..++..+++.+...+. ..+..+|.++...+.+++|...|
T Consensus 440 -------------------------AV~~~AEL~~~Eg~~~D~i~LLe~~L~~~~D~~LH~~Lgd~~~A~Ne~Q~am~~y 494 (564)
T KOG1174|consen 440 -------------------------AVNLIAELCQVEGPTKDIIKLLEKHLIIFPDVNLHNHLGDIMRAQNEPQKAMEYY 494 (564)
T ss_pred -------------------------HHHHHHHHHHhhCccchHHHHHHHHHhhccccHHHHHHHHHHHHhhhHHHHHHHH
Confidence 3344555666667777777777776554433 45668888889999999999999
Q ss_pred HHHHhcCCCcHHHHHHHHHHHHHcC
Q 012143 425 LAALKADPKAAHIWANLANAYYLTG 449 (470)
Q Consensus 425 ~~al~~~p~~~~~~~~la~~~~~~g 449 (470)
..|+.++|++..+...+-.+-....
T Consensus 495 ~~ALr~dP~~~~sl~Gl~~lEK~~~ 519 (564)
T KOG1174|consen 495 YKALRQDPKSKRTLRGLRLLEKSDD 519 (564)
T ss_pred HHHHhcCccchHHHHHHHHHHhccC
Confidence 9999999999887777666544433
|
|
| >COG3063 PilF Tfp pilus assembly protein PilF [Cell motility and secretion / Intracellular trafficking and secretion] | Back alignment and domain information |
|---|
Probab=99.86 E-value=4e-19 Score=139.20 Aligned_cols=139 Identities=19% Similarity=0.197 Sum_probs=127.8
Q ss_pred hHHHHHHHHHHHHcCChHHHHHHHHHHhhcCCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCChHHHHHHHHHHH
Q 012143 166 AVVWNTLGLILLKSGRLQSSISVLSSLLAVDPNNCDCIGNLGIAYFQSGDMEQSAKCFQDLILKDQNHPAALINYAALLL 245 (470)
Q Consensus 166 ~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~l~~~~~ 245 (470)
..+...+|.-|+..|++..|...++++++.+|++..+|..++.+|...|+.+.|.+.|++++.++|++.+++.+.|..+.
T Consensus 35 a~arlqLal~YL~~gd~~~A~~nlekAL~~DPs~~~a~~~~A~~Yq~~Ge~~~A~e~YrkAlsl~p~~GdVLNNYG~FLC 114 (250)
T COG3063 35 AKARLQLALGYLQQGDYAQAKKNLEKALEHDPSYYLAHLVRAHYYQKLGENDLADESYRKALSLAPNNGDVLNNYGAFLC 114 (250)
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHcCChhhHHHHHHHHHhcCCCccchhhhhhHHHH
Confidence 45778899999999999999999999999999999999999999999999999999999999999999999999998887
Q ss_pred hhhcccccccccchhhhhHHHhcCCHHHHHHHHHHHHhc--CCCCHHHHHHHHHHHHHcCChhHHHHHHHHHHhcCCCcc
Q 012143 246 CKYGSVLAGAGANTGEGACLDQASAVNVAKECLLAALKA--DPKAAHIWANLANAYYLTGDHRSSGKCLEKAAKLEPNCM 323 (470)
Q Consensus 246 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~--~p~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~p~~~ 323 (470)
..|++++|...|++++.. .|..+.++.++|.|..+.|+++.|..+|+++++.+|+++
T Consensus 115 ---------------------~qg~~~eA~q~F~~Al~~P~Y~~~s~t~eN~G~Cal~~gq~~~A~~~l~raL~~dp~~~ 173 (250)
T COG3063 115 ---------------------AQGRPEEAMQQFERALADPAYGEPSDTLENLGLCALKAGQFDQAEEYLKRALELDPQFP 173 (250)
T ss_pred ---------------------hCCChHHHHHHHHHHHhCCCCCCcchhhhhhHHHHhhcCCchhHHHHHHHHHHhCcCCC
Confidence 689999999999999974 345678999999999999999999999999999999976
Q ss_pred cH
Q 012143 324 ST 325 (470)
Q Consensus 324 ~~ 325 (470)
..
T Consensus 174 ~~ 175 (250)
T COG3063 174 PA 175 (250)
T ss_pred hH
Confidence 53
|
|
| >COG3063 PilF Tfp pilus assembly protein PilF [Cell motility and secretion / Intracellular trafficking and secretion] | Back alignment and domain information |
|---|
Probab=99.86 E-value=1.3e-19 Score=141.95 Aligned_cols=204 Identities=21% Similarity=0.240 Sum_probs=154.3
Q ss_pred hhhhcccchhhhhcChhhHHHHHHHHHHhCCCChhHHHHHHHHHHHhCChhHHHHHHHHHHHHHhhhhcccchhhhHHHH
Q 012143 42 DQSGLGTSSSSREEKVSSLKTGLVHVARKMPKNAHAHFLLGLMYQRLGQPLKAVSSYEKAEEILLRCEADIARPELLSLV 121 (470)
Q Consensus 42 ~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~ 121 (470)
+...+|.. ++..|++..|...++++++.+|++..+|..++.+|...|+.+.|.+.|++|+++
T Consensus 37 arlqLal~-YL~~gd~~~A~~nlekAL~~DPs~~~a~~~~A~~Yq~~Ge~~~A~e~YrkAlsl----------------- 98 (250)
T COG3063 37 ARLQLALG-YLQQGDYAQAKKNLEKALEHDPSYYLAHLVRAHYYQKLGENDLADESYRKALSL----------------- 98 (250)
T ss_pred HHHHHHHH-HHHCCCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHcCChhhHHHHHHHHHhc-----------------
Confidence 44566666 777777777777777777777777777777777777777777776666666655
Q ss_pred HHhhhccccccccCCCccccccCcccHHHHHHHHHHhhhcCccchHHHHHHHHHHHHcCChHHHHHHHHHHhhc--CCCC
Q 012143 122 QIHHAQCLLPESSGDNSLDKELEPEELEEILSKLKESMQSDTRQAVVWNTLGLILLKSGRLQSSISVLSSLLAV--DPNN 199 (470)
Q Consensus 122 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~--~~~~ 199 (470)
+|++.+++.+.|..++.+|++++|...|++++.. .|..
T Consensus 99 ----------------------------------------~p~~GdVLNNYG~FLC~qg~~~eA~q~F~~Al~~P~Y~~~ 138 (250)
T COG3063 99 ----------------------------------------APNNGDVLNNYGAFLCAQGRPEEAMQQFERALADPAYGEP 138 (250)
T ss_pred ----------------------------------------CCCccchhhhhhHHHHhCCChHHHHHHHHHHHhCCCCCCc
Confidence 6677778888888888888888888888888763 3455
Q ss_pred hHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCChHHHHHHHHHHHhhhcccccccccchhhhhHHHhcCCHHHHHHHHH
Q 012143 200 CDCIGNLGIAYFQSGDMEQSAKCFQDLILKDQNHPAALINYAALLLCKYGSVLAGAGANTGEGACLDQASAVNVAKECLL 279 (470)
Q Consensus 200 ~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~ 279 (470)
+.++-++|.|..+.|+++.|.+.|+++++.+|+.+.....++..++ ..|++..|..+++
T Consensus 139 s~t~eN~G~Cal~~gq~~~A~~~l~raL~~dp~~~~~~l~~a~~~~---------------------~~~~y~~Ar~~~~ 197 (250)
T COG3063 139 SDTLENLGLCALKAGQFDQAEEYLKRALELDPQFPPALLELARLHY---------------------KAGDYAPARLYLE 197 (250)
T ss_pred chhhhhhHHHHhhcCCchhHHHHHHHHHHhCcCCChHHHHHHHHHH---------------------hcccchHHHHHHH
Confidence 6778888888888888888888888888888888888877777776 6788888888888
Q ss_pred HHHhcCCCCHHHHHHHHHHHHHcCChhHHHHHHHHHHhcCCCccc
Q 012143 280 AALKADPKAAHIWANLANAYYLTGDHRSSGKCLEKAAKLEPNCMS 324 (470)
Q Consensus 280 ~~~~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~p~~~~ 324 (470)
+.....+-....+.....+-...|+-+.+-.+=.+.....|....
T Consensus 198 ~~~~~~~~~A~sL~L~iriak~~gd~~~a~~Y~~qL~r~fP~s~e 242 (250)
T COG3063 198 RYQQRGGAQAESLLLGIRIAKRLGDRAAAQRYQAQLQRLFPYSEE 242 (250)
T ss_pred HHHhcccccHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCCcHH
Confidence 877777777777777777788888888777777777777777543
|
|
| >KOG1129 consensus TPR repeat-containing protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.86 E-value=1e-19 Score=149.43 Aligned_cols=225 Identities=12% Similarity=0.056 Sum_probs=131.6
Q ss_pred ccHHHHHHHHHHhhhcCccchHHHHHHHHHHHHcCChHHHHHHHHHHhhcCCCChHHHHHHHHHHHHcCCHHHHHHHHHH
Q 012143 146 EELEEILSKLKESMQSDTRQAVVWNTLGLILLKSGRLQSSISVLSSLLAVDPNNCDCIGNLGIAYFQSGDMEQSAKCFQD 225 (470)
Q Consensus 146 ~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~ 225 (470)
|-+.+|.+.++..+...|. ++.+..++.+|.+..++..|+..|.+.++..|.+...+...+.++..++++++|.++|+.
T Consensus 237 gm~r~AekqlqssL~q~~~-~dTfllLskvY~ridQP~~AL~~~~~gld~fP~~VT~l~g~ARi~eam~~~~~a~~lYk~ 315 (478)
T KOG1129|consen 237 GMPRRAEKQLQSSLTQFPH-PDTFLLLSKVYQRIDQPERALLVIGEGLDSFPFDVTYLLGQARIHEAMEQQEDALQLYKL 315 (478)
T ss_pred cChhhhHHHHHHHhhcCCc-hhHHHHHHHHHHHhccHHHHHHHHhhhhhcCCchhhhhhhhHHHHHHHHhHHHHHHHHHH
Confidence 3345555555555554432 445555555555555555555555555555555555555555555555555555555555
Q ss_pred HHhhCCCChHHHHHHHHHHHhhhcccccccccchhhhhHHHhcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCh
Q 012143 226 LILKDQNHPAALINYAALLLCKYGSVLAGAGANTGEGACLDQASAVNVAKECLLAALKADPKAAHIWANLANAYYLTGDH 305 (470)
Q Consensus 226 ~l~~~p~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~la~~~~~~g~~ 305 (470)
+++.+|.+.++.-.++..|+ -.++++-|+.+|++.+++.-.+++.+.++|.|++..+++
T Consensus 316 vlk~~~~nvEaiAcia~~yf---------------------Y~~~PE~AlryYRRiLqmG~~speLf~NigLCC~yaqQ~ 374 (478)
T KOG1129|consen 316 VLKLHPINVEAIACIAVGYF---------------------YDNNPEMALRYYRRILQMGAQSPELFCNIGLCCLYAQQI 374 (478)
T ss_pred HHhcCCccceeeeeeeeccc---------------------cCCChHHHHHHHHHHHHhcCCChHHHhhHHHHHHhhcch
Confidence 55555555554433333333 345555555555555555555555555555555555555
Q ss_pred hHHHHHHHHHHhcCCCcccHHHHHHHHHHHHhhhccCchHHhhhhHHHHHHHhhcCCCCCCCcHHHHHHHHHHHhccccH
Q 012143 306 RSSGKCLEKAAKLEPNCMSTRYAVAVSRIKDAERSQEPTEQLSWAGNEMASILREGDPVQIEPPIAWAGFAAVQKTHHEV 385 (470)
Q Consensus 306 ~~A~~~~~~a~~~~p~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~ 385 (470)
+-++..|++++......
T Consensus 375 D~~L~sf~RAlstat~~--------------------------------------------------------------- 391 (478)
T KOG1129|consen 375 DLVLPSFQRALSTATQP--------------------------------------------------------------- 391 (478)
T ss_pred hhhHHHHHHHHhhccCc---------------------------------------------------------------
Confidence 55555555555433221
Q ss_pred HHHHHHHHHHhcchhhhhHhhHHHHHHHhccHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHcCChHHHHHHHHHHHHhh
Q 012143 386 AAAFETEENELSKMEECAGAGESAFLDQASAVNVAKECLLAALKADPKAAHIWANLANAYYLTGDHRSSGKCLEKVLMVY 465 (470)
Q Consensus 386 ~~A~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~ 465 (470)
....++|+++|.+..-.|++.-|..+|+-++..+|++.+++.+||.+-.+.|+.++|..++..|-.+.
T Consensus 392 ------------~~aaDvWYNlg~vaV~iGD~nlA~rcfrlaL~~d~~h~ealnNLavL~~r~G~i~~Arsll~~A~s~~ 459 (478)
T KOG1129|consen 392 ------------GQAADVWYNLGFVAVTIGDFNLAKRCFRLALTSDAQHGEALNNLAVLAARSGDILGARSLLNAAKSVM 459 (478)
T ss_pred ------------chhhhhhhccceeEEeccchHHHHHHHHHHhccCcchHHHHHhHHHHHhhcCchHHHHHHHHHhhhhC
Confidence 11124566666666666777777778888888888888888888888888888888888887777666
Q ss_pred cc
Q 012143 466 CS 467 (470)
Q Consensus 466 ~~ 467 (470)
|.
T Consensus 460 P~ 461 (478)
T KOG1129|consen 460 PD 461 (478)
T ss_pred cc
Confidence 53
|
|
| >TIGR00540 hemY_coli hemY protein | Back alignment and domain information |
|---|
Probab=99.86 E-value=8.6e-19 Score=161.34 Aligned_cols=270 Identities=10% Similarity=0.014 Sum_probs=214.3
Q ss_pred hhhhhhhhhhhhhHHHHHHHHHHHHhcCCCCcchhhhcccchhhhhcChhhHHHHHHHHHHhCCCCh-hHHHHHHHHHHH
Q 012143 9 EVEGKKINKLGKCRSRISSKMDSALEFGVDADGDQSGLGTSSSSREEKVSSLKTGLVHVARKMPKNA-HAHFLLGLMYQR 87 (470)
Q Consensus 9 ~~~~~~~~~~g~~~~a~~~~~~~~l~~~p~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~p~~~-~~~~~l~~~~~~ 87 (470)
-.+|......|++..|. ..+.++.+..|+....+...|.. ....|+++.|...+.++.+..|++. .+....+.++..
T Consensus 88 ~~~glla~~~g~~~~A~-~~l~~~~~~~~~~~~~~llaA~a-a~~~g~~~~A~~~l~~a~~~~p~~~l~~~~~~a~l~l~ 165 (409)
T TIGR00540 88 TEEALLKLAEGDYAKAE-KLIAKNADHAAEPVLNLIKAAEA-AQQRGDEARANQHLEEAAELAGNDNILVEIARTRILLA 165 (409)
T ss_pred HHHHHHHHhCCCHHHHH-HHHHHHhhcCCCCHHHHHHHHHH-HHHCCCHHHHHHHHHHHHHhCCcCchHHHHHHHHHHHH
Confidence 34566777889999999 89999999989888888888999 9999999999999999999999886 567778999999
Q ss_pred hCChhHHHHHHHHHHHHHhhhhcccchhhhHHHHHHhhhccccccccCCCccccccCcccHHHHHHHHHHhhhcCccchH
Q 012143 88 LGQPLKAVSSYEKAEEILLRCEADIARPELLSLVQIHHAQCLLPESSGDNSLDKELEPEELEEILSKLKESMQSDTRQAV 167 (470)
Q Consensus 88 ~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~p~~~~ 167 (470)
.|++++|...+++.++..|++. .. +...+.+ +...|++++|++.+.+..+..+.++.
T Consensus 166 ~~~~~~Al~~l~~l~~~~P~~~------~~------l~ll~~~-----------~~~~~d~~~a~~~l~~l~k~~~~~~~ 222 (409)
T TIGR00540 166 QNELHAARHGVDKLLEMAPRHK------EV------LKLAEEA-----------YIRSGAWQALDDIIDNMAKAGLFDDE 222 (409)
T ss_pred CCCHHHHHHHHHHHHHhCCCCH------HH------HHHHHHH-----------HHHHhhHHHHHHHHHHHHHcCCCCHH
Confidence 9999999999999999987752 22 1222222 46788899999999999976544333
Q ss_pred HH----HHHHHHHHHcCChHHHHHHHHHHhhcCC----CChHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCChHHHHH
Q 012143 168 VW----NTLGLILLKSGRLQSSISVLSSLLAVDP----NNCDCIGNLGIAYFQSGDMEQSAKCFQDLILKDQNHPAALIN 239 (470)
Q Consensus 168 ~~----~~l~~~~~~~~~~~~A~~~~~~a~~~~~----~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~ 239 (470)
.. .....-+...+..+++.+.+.++....| +++..+..++..+...|++++|.+.++++++..|++....+.
T Consensus 223 ~~~~l~~~a~~~~l~~~~~~~~~~~L~~~~~~~p~~~~~~~~l~~~~a~~l~~~g~~~~A~~~l~~~l~~~pd~~~~~~~ 302 (409)
T TIGR00540 223 EFADLEQKAEIGLLDEAMADEGIDGLLNWWKNQPRHRRHNIALKIALAEHLIDCDDHDSAQEIIFDGLKKLGDDRAISLP 302 (409)
T ss_pred HHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHCCHHHhCCHHHHHHHHHHHHHCCChHHHHHHHHHHHhhCCCcccchhH
Confidence 22 1222223445555666778888888777 589999999999999999999999999999999988753211
Q ss_pred HHHHHHhhhcccccccccchhhhhHHHhcCCHHHHHHHHHHHHhcCCCCH--HHHHHHHHHHHHcCChhHHHHHHH--HH
Q 012143 240 YAALLLCKYGSVLAGAGANTGEGACLDQASAVNVAKECLLAALKADPKAA--HIWANLANAYYLTGDHRSSGKCLE--KA 315 (470)
Q Consensus 240 l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~p~~~--~~~~~la~~~~~~g~~~~A~~~~~--~a 315 (470)
+...+. ....++.+.+++.++++++..|+++ .....+|.++++.|++++|.++|+ .+
T Consensus 303 ~l~~~~-------------------~l~~~~~~~~~~~~e~~lk~~p~~~~~~ll~sLg~l~~~~~~~~~A~~~le~a~a 363 (409)
T TIGR00540 303 LCLPIP-------------------RLKPEDNEKLEKLIEKQAKNVDDKPKCCINRALGQLLMKHGEFIEAADAFKNVAA 363 (409)
T ss_pred HHHHhh-------------------hcCCCChHHHHHHHHHHHHhCCCChhHHHHHHHHHHHHHcccHHHHHHHHHHhHH
Confidence 111111 1145778999999999999999999 889999999999999999999999 57
Q ss_pred HhcCCCc
Q 012143 316 AKLEPNC 322 (470)
Q Consensus 316 ~~~~p~~ 322 (470)
++..|+.
T Consensus 364 ~~~~p~~ 370 (409)
T TIGR00540 364 CKEQLDA 370 (409)
T ss_pred hhcCCCH
Confidence 7788874
|
This is an uncharacterized protein encoded next to a heme-biosynthetic enzyme in two gamma division proteobacteria (E. coli and H. influenzae). It is known in no other species. The gene symbol hemY is unfortunate in that an unrelated protein, protoporphyrinogen oxidase, is designated as HemG in E. coli but as HemY in Bacillus subtilis. |
| >TIGR02521 type_IV_pilW type IV pilus biogenesis/stability protein PilW | Back alignment and domain information |
|---|
Probab=99.86 E-value=3.1e-19 Score=153.05 Aligned_cols=202 Identities=19% Similarity=0.201 Sum_probs=154.9
Q ss_pred hhHHHHHHHHHHHhCChhHHHHHHHHHHHHHhhhhcccchhhhHHHHHHhhhccccccccCCCccccccCcccHHHHHHH
Q 012143 75 AHAHFLLGLMYQRLGQPLKAVSSYEKAEEILLRCEADIARPELLSLVQIHHAQCLLPESSGDNSLDKELEPEELEEILSK 154 (470)
Q Consensus 75 ~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~ 154 (470)
+.++..+|.++...|++++|+..++++++..|... ..+..++.+ +...|++++|+..
T Consensus 31 ~~~~~~la~~~~~~~~~~~A~~~~~~~l~~~p~~~------------~~~~~la~~-----------~~~~~~~~~A~~~ 87 (234)
T TIGR02521 31 AKIRVQLALGYLEQGDLEVAKENLDKALEHDPDDY------------LAYLALALY-----------YQQLGELEKAEDS 87 (234)
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCcccH------------HHHHHHHHH-----------HHHcCCHHHHHHH
Confidence 45666666666666666666666666666544321 112222222 2344555666666
Q ss_pred HHHhhhcCccchHHHHHHHHHHHHcCChHHHHHHHHHHhhcC--CCChHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCC
Q 012143 155 LKESMQSDTRQAVVWNTLGLILLKSGRLQSSISVLSSLLAVD--PNNCDCIGNLGIAYFQSGDMEQSAKCFQDLILKDQN 232 (470)
Q Consensus 155 ~~~~~~~~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~--~~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~ 232 (470)
+++++...|.++.++..+|.++...|++++|+..+++++... |.....+..+|.++...|++++|...+.+++..+|.
T Consensus 88 ~~~al~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~ 167 (234)
T TIGR02521 88 FRRALTLNPNNGDVLNNYGTFLCQQGKYEQAMQQFEQAIEDPLYPQPARSLENAGLCALKAGDFDKAEKYLTRALQIDPQ 167 (234)
T ss_pred HHHHHhhCCCCHHHHHHHHHHHHHcccHHHHHHHHHHHHhccccccchHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcC
Confidence 666676777778888899999999999999999999998753 455678888999999999999999999999999998
Q ss_pred ChHHHHHHHHHHHhhhcccccccccchhhhhHHHhcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCChhHHHHHH
Q 012143 233 HPAALINYAALLLCKYGSVLAGAGANTGEGACLDQASAVNVAKECLLAALKADPKAAHIWANLANAYYLTGDHRSSGKCL 312 (470)
Q Consensus 233 ~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~la~~~~~~g~~~~A~~~~ 312 (470)
++..+..++.++. ..|++++|+..+++++...|.++..+..++.++...|+.++|..+.
T Consensus 168 ~~~~~~~la~~~~---------------------~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~ 226 (234)
T TIGR02521 168 RPESLLELAELYY---------------------LRGQYKDARAYLERYQQTYNQTAESLWLGIRIARALGDVAAAQRYG 226 (234)
T ss_pred ChHHHHHHHHHHH---------------------HcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHhhHHHHHHHH
Confidence 8888887777776 6899999999999999988888888888999999999999999888
Q ss_pred HHHHhcCC
Q 012143 313 EKAAKLEP 320 (470)
Q Consensus 313 ~~a~~~~p 320 (470)
+.+....|
T Consensus 227 ~~~~~~~~ 234 (234)
T TIGR02521 227 AQLQKLFP 234 (234)
T ss_pred HHHHhhCc
Confidence 87766543
|
Members of this family are designated PilF in ref (PubMed:8973346) and PilW in ref (PubMed:15612916). This outer membrane protein is required both for pilus stability and for pilus function such as adherence to human cells. Members of this family contain copies of the TPR (tetratricopeptide repeat) domain. |
| >KOG0550 consensus Molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=99.85 E-value=2.8e-20 Score=157.40 Aligned_cols=275 Identities=12% Similarity=0.052 Sum_probs=232.0
Q ss_pred ccCcccHHHHHHHHHHhhhcCccchHHHHHHHHHHHHcCChHHHHHHHHHHhhcCCCChHHHHHHHHHHHHcCCHHHHHH
Q 012143 142 ELEPEELEEILSKLKESMQSDTRQAVVWNTLGLILLKSGRLQSSISVLSSLLAVDPNNCDCIGNLGIAYFQSGDMEQSAK 221 (470)
Q Consensus 142 ~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~la~~~~~~g~~~~A~~ 221 (470)
+++..+|.+|+..+..++...|+++..|.+.+.+++..|++++|....++.+++.|..+..+...+.++..+++..+|.+
T Consensus 59 ~yk~k~Y~nal~~yt~Ai~~~pd~a~yy~nRAa~~m~~~~~~~a~~dar~~~r~kd~~~k~~~r~~~c~~a~~~~i~A~~ 138 (486)
T KOG0550|consen 59 FYKQKTYGNALKNYTFAIDMCPDNASYYSNRAATLMMLGRFEEALGDARQSVRLKDGFSKGQLREGQCHLALSDLIEAEE 138 (486)
T ss_pred HHHHhhHHHHHHHHHHHHHhCccchhhhchhHHHHHHHHhHhhcccchhhheecCCCccccccchhhhhhhhHHHHHHHH
Confidence 46778899999999999999999999999999999999999999999999999999999999999999999999988887
Q ss_pred HHHHHH------------hhCCCCh--HHHHHHHHHHHhhhcccccccccchhhhhHHHhcCCHHHHHHHHHHHHhcCCC
Q 012143 222 CFQDLI------------LKDQNHP--AALINYAALLLCKYGSVLAGAGANTGEGACLDQASAVNVAKECLLAALKADPK 287 (470)
Q Consensus 222 ~~~~~l------------~~~p~~~--~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~p~ 287 (470)
.++..- .+-|.+. ++. ...-...+.|+...|++++|...--..+++++.
T Consensus 139 ~~~~~~~~~~anal~~~~~~~~s~s~~pac-----------------~~a~~lka~cl~~~~~~~~a~~ea~~ilkld~~ 201 (486)
T KOG0550|consen 139 KLKSKQAYKAANALPTLEKLAPSHSREPAC-----------------FKAKLLKAECLAFLGDYDEAQSEAIDILKLDAT 201 (486)
T ss_pred HhhhhhhhHHhhhhhhhhcccccccCCchh-----------------hHHHHhhhhhhhhcccchhHHHHHHHHHhcccc
Confidence 776211 0011111 000 111122356777899999999999999999999
Q ss_pred CHHHHHHHHHHHHHcCChhHHHHHHHHHHhcCCCcccHHHHHHHHHHHHhhhccCchHHhhhhHHHHHHHhhcCCCCCCC
Q 012143 288 AAHIWANLANAYYLTGDHRSSGKCLEKAAKLEPNCMSTRYAVAVSRIKDAERSQEPTEQLSWAGNEMASILREGDPVQIE 367 (470)
Q Consensus 288 ~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~p~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 367 (470)
+.++++..|.+++..++.+.|+..|++++.++|+....-..... +.
T Consensus 202 n~~al~vrg~~~yy~~~~~ka~~hf~qal~ldpdh~~sk~~~~~----------------------------------~k 247 (486)
T KOG0550|consen 202 NAEALYVRGLCLYYNDNADKAINHFQQALRLDPDHQKSKSASMM----------------------------------PK 247 (486)
T ss_pred hhHHHHhcccccccccchHHHHHHHhhhhccChhhhhHHhHhhh----------------------------------HH
Confidence 99999999999999999999999999999999997654332111 11
Q ss_pred cHHHHHHHHHHHhccccHHHHHHHHHHHhcchhh------hhHhhHHHHHHHhccHHHHHHHHHHHHhcCCCcHHHHHHH
Q 012143 368 PPIAWAGFAAVQKTHHEVAAAFETEENELSKMEE------CAGAGESAFLDQASAVNVAKECLLAALKADPKAAHIWANL 441 (470)
Q Consensus 368 ~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~------~~~~~l~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l 441 (470)
.-..|-..|+-..+.|++..|.+.|..++...|. ..+.+.+.+..++|+..+|+..++.++.++|....++...
T Consensus 248 ~le~~k~~gN~~fk~G~y~~A~E~Yteal~idP~n~~~naklY~nra~v~~rLgrl~eaisdc~~Al~iD~syikall~r 327 (486)
T KOG0550|consen 248 KLEVKKERGNDAFKNGNYRKAYECYTEALNIDPSNKKTNAKLYGNRALVNIRLGRLREAISDCNEALKIDSSYIKALLRR 327 (486)
T ss_pred HHHHHHhhhhhHhhccchhHHHHHHHHhhcCCccccchhHHHHHHhHhhhcccCCchhhhhhhhhhhhcCHHHHHHHHHH
Confidence 2246778889999999999999999998774433 4477999999999999999999999999999999999999
Q ss_pred HHHHHHcCChHHHHHHHHHHHHhhcc
Q 012143 442 ANAYYLTGDHRSSGKCLEKVLMVYCS 467 (470)
Q Consensus 442 a~~~~~~g~~~~A~~~~~~al~~~~~ 467 (470)
|.|+..+++|++|++.|+++++.-.+
T Consensus 328 a~c~l~le~~e~AV~d~~~a~q~~~s 353 (486)
T KOG0550|consen 328 ANCHLALEKWEEAVEDYEKAMQLEKD 353 (486)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhhccc
Confidence 99999999999999999999987654
|
|
| >KOG1156 consensus N-terminal acetyltransferase [Chromatin structure and dynamics] | Back alignment and domain information |
|---|
Probab=99.85 E-value=4.9e-18 Score=151.91 Aligned_cols=377 Identities=13% Similarity=0.116 Sum_probs=233.9
Q ss_pred hhhcccchhhhhcChhhHHHHHHHHHHhCCCChhHHHHHHHHHHHhCChhHHHHHHHHHHHHHhhhhcccchhhhHHHHH
Q 012143 43 QSGLGTSSSSREEKVSSLKTGLVHVARKMPKNAHAHFLLGLMYQRLGQPLKAVSSYEKAEEILLRCEADIARPELLSLVQ 122 (470)
Q Consensus 43 ~~~~~~~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~ 122 (470)
++....- .+..++|....+..+.+++..|.+++.+...|..+...|+-++|....+.+++.++.+ ..
T Consensus 10 lF~~~lk-~yE~kQYkkgLK~~~~iL~k~~eHgeslAmkGL~L~~lg~~~ea~~~vr~glr~d~~S------------~v 76 (700)
T KOG1156|consen 10 LFRRALK-CYETKQYKKGLKLIKQILKKFPEHGESLAMKGLTLNCLGKKEEAYELVRLGLRNDLKS------------HV 76 (700)
T ss_pred HHHHHHH-HHHHHHHHhHHHHHHHHHHhCCccchhHHhccchhhcccchHHHHHHHHHHhccCccc------------ch
Confidence 3444444 6677888888888888898899999999999999999999999999888888865443 24
Q ss_pred HhhhccccccccCCCccccccCcccHHHHHHHHHHhhhcCccchHHHHHHHHHHHHcCChHHHHHHHHHHhhcCCCChHH
Q 012143 123 IHHAQCLLPESSGDNSLDKELEPEELEEILSKLKESMQSDTRQAVVWNTLGLILLKSGRLQSSISVLSSLLAVDPNNCDC 202 (470)
Q Consensus 123 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~ 202 (470)
+|+.+|.++ ....+|++|+++|+.++..+|+|..+|..++.+..++++++-....-.+.++..|.....
T Consensus 77 CwHv~gl~~-----------R~dK~Y~eaiKcy~nAl~~~~dN~qilrDlslLQ~QmRd~~~~~~tr~~LLql~~~~ra~ 145 (700)
T KOG1156|consen 77 CWHVLGLLQ-----------RSDKKYDEAIKCYRNALKIEKDNLQILRDLSLLQIQMRDYEGYLETRNQLLQLRPSQRAS 145 (700)
T ss_pred hHHHHHHHH-----------hhhhhHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHHhhhhHHHHHHHHHHhhhhhHHH
Confidence 666777654 355677999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHhhC---CCChHHHHHHHHHHHhhhcccccccccchhhhhHHHhcCCHHHHHHHHH
Q 012143 203 IGNLGIAYFQSGDMEQSAKCFQDLILKD---QNHPAALINYAALLLCKYGSVLAGAGANTGEGACLDQASAVNVAKECLL 279 (470)
Q Consensus 203 ~~~la~~~~~~g~~~~A~~~~~~~l~~~---p~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~ 279 (470)
|+..+..+...|++..|....+...... |+....-......+. ..+..+.|.+++|.+.+.
T Consensus 146 w~~~Avs~~L~g~y~~A~~il~ef~~t~~~~~s~~~~e~se~~Ly~----------------n~i~~E~g~~q~ale~L~ 209 (700)
T KOG1156|consen 146 WIGFAVAQHLLGEYKMALEILEEFEKTQNTSPSKEDYEHSELLLYQ----------------NQILIEAGSLQKALEHLL 209 (700)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhccCCCHHHHHHHHHHHHH----------------HHHHHHcccHHHHHHHHH
Confidence 9999999999999999999888877654 333222222222222 223334455555554444
Q ss_pred HHHhcCCCCHHHHHHHHHHHHHcCChhHHHHHHHHHHhcCCCcccHHHHHHHHHH--HHhhhcc-----------Cc---
Q 012143 280 AALKADPKAAHIWANLANAYYLTGDHRSSGKCLEKAAKLEPNCMSTRYAVAVSRI--KDAERSQ-----------EP--- 343 (470)
Q Consensus 280 ~~~~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~p~~~~~~~~l~~~~~--~~~~~~~-----------~~--- 343 (470)
.--..--+........+.++.+++++++|...|...+..+|++...+..+-.+.. ....... ..
T Consensus 210 ~~e~~i~Dkla~~e~ka~l~~kl~~lEeA~~~y~~Ll~rnPdn~~Yy~~l~~~lgk~~d~~~~lk~ly~~ls~~y~r~e~ 289 (700)
T KOG1156|consen 210 DNEKQIVDKLAFEETKADLLMKLGQLEEAVKVYRRLLERNPDNLDYYEGLEKALGKIKDMLEALKALYAILSEKYPRHEC 289 (700)
T ss_pred hhhhHHHHHHHHhhhHHHHHHHHhhHHhHHHHHHHHHhhCchhHHHHHHHHHHHHHHhhhHHHHHHHHHHHhhcCccccc
Confidence 3322222233334444555555555555555555555555555443332211110 0000000 00
Q ss_pred ----------hHHhhhhH-HHHHHHhhcCCCCCCCcHHHHHHHHHHHhcccc---HHHHHHHHHHHhcch----------
Q 012143 344 ----------TEQLSWAG-NEMASILREGDPVQIEPPIAWAGFAAVQKTHHE---VAAAFETEENELSKM---------- 399 (470)
Q Consensus 344 ----------~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~---~~~A~~~~~~~~~~~---------- 399 (470)
.+.+.... ..+...+..+. |.+...+-..|....+ .++-+..|...+.+.
T Consensus 290 p~Rlplsvl~~eel~~~vdkyL~~~l~Kg~------p~vf~dl~SLyk~p~k~~~le~Lvt~y~~~L~~~~~f~~~D~~~ 363 (700)
T KOG1156|consen 290 PRRLPLSVLNGEELKEIVDKYLRPLLSKGV------PSVFKDLRSLYKDPEKVAFLEKLVTSYQHSLSGTGMFNFLDDGK 363 (700)
T ss_pred chhccHHHhCcchhHHHHHHHHHHHhhcCC------CchhhhhHHHHhchhHhHHHHHHHHHHHhhcccccCCCcccccc
Confidence 00000000 01111111111 1122222222222111 122222333322211
Q ss_pred --hh--h--hHhhHHHHHHHhccHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHcCChHHHHHHHHHHHHhh
Q 012143 400 --EE--C--AGAGESAFLDQASAVNVAKECLLAALKADPKAAHIWANLANAYYLTGDHRSSGKCLEKVLMVY 465 (470)
Q Consensus 400 --~~--~--~~~~l~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~ 465 (470)
++ - .++.++.-+...|+++.|..+...|+...|.-++.+...|+++...|+.++|..+++.+-++-
T Consensus 364 ~E~PttllWt~y~laqh~D~~g~~~~A~~yId~AIdHTPTliEly~~KaRI~kH~G~l~eAa~~l~ea~elD 435 (700)
T KOG1156|consen 364 QEPPTTLLWTLYFLAQHYDKLGDYEVALEYIDLAIDHTPTLIELYLVKARIFKHAGLLDEAAAWLDEAQELD 435 (700)
T ss_pred cCCchHHHHHHHHHHHHHHHcccHHHHHHHHHHHhccCchHHHHHHHHHHHHHhcCChHHHHHHHHHHHhcc
Confidence 11 1 234666677778888888888888888888888888888888888888888888888777653
|
|
| >PLN02789 farnesyltranstransferase | Back alignment and domain information |
|---|
Probab=99.85 E-value=1.3e-18 Score=151.42 Aligned_cols=163 Identities=14% Similarity=0.086 Sum_probs=141.7
Q ss_pred ccHHHHHHHHHHhhhcCccchHHHHHHHHHHHHcC-ChHHHHHHHHHHhhcCCCChHHHHHHHHHHHHcCCH--HHHHHH
Q 012143 146 EELEEILSKLKESMQSDTRQAVVWNTLGLILLKSG-RLQSSISVLSSLLAVDPNNCDCIGNLGIAYFQSGDM--EQSAKC 222 (470)
Q Consensus 146 ~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~~-~~~~A~~~~~~a~~~~~~~~~~~~~la~~~~~~g~~--~~A~~~ 222 (470)
++.++|+..+.+++..+|.+..+|..++.++..+| .+++++..++++++.+|++..+|...+.++...|+. ++++.+
T Consensus 51 e~serAL~lt~~aI~lnP~~ytaW~~R~~iL~~L~~~l~eeL~~~~~~i~~npknyqaW~~R~~~l~~l~~~~~~~el~~ 130 (320)
T PLN02789 51 ERSPRALDLTADVIRLNPGNYTVWHFRRLCLEALDADLEEELDFAEDVAEDNPKNYQIWHHRRWLAEKLGPDAANKELEF 130 (320)
T ss_pred CCCHHHHHHHHHHHHHCchhHHHHHHHHHHHHHcchhHHHHHHHHHHHHHHCCcchHHhHHHHHHHHHcCchhhHHHHHH
Confidence 45589999999999999999999999999999998 679999999999999999999999999999888874 778999
Q ss_pred HHHHHhhCCCChHHHHHHHHHHHhhhcccccccccchhhhhHHHhcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHc
Q 012143 223 FQDLILKDQNHPAALINYAALLLCKYGSVLAGAGANTGEGACLDQASAVNVAKECLLAALKADPKAAHIWANLANAYYLT 302 (470)
Q Consensus 223 ~~~~l~~~p~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~la~~~~~~ 302 (470)
++++++.+|.+..+|...+.++. ..|+++++++++.++++.+|.+..+|..++.+....
T Consensus 131 ~~kal~~dpkNy~AW~~R~w~l~---------------------~l~~~~eeL~~~~~~I~~d~~N~sAW~~R~~vl~~~ 189 (320)
T PLN02789 131 TRKILSLDAKNYHAWSHRQWVLR---------------------TLGGWEDELEYCHQLLEEDVRNNSAWNQRYFVITRS 189 (320)
T ss_pred HHHHHHhCcccHHHHHHHHHHHH---------------------HhhhHHHHHHHHHHHHHHCCCchhHHHHHHHHHHhc
Confidence 99999999999999999988887 578899999999999999999999999999888776
Q ss_pred ---CCh----hHHHHHHHHHHhcCCCcccHHHHH
Q 012143 303 ---GDH----RSSGKCLEKAAKLEPNCMSTRYAV 329 (470)
Q Consensus 303 ---g~~----~~A~~~~~~a~~~~p~~~~~~~~l 329 (470)
|.+ ++++.+..+++..+|++..+|..+
T Consensus 190 ~~l~~~~~~~e~el~y~~~aI~~~P~N~SaW~Yl 223 (320)
T PLN02789 190 PLLGGLEAMRDSELKYTIDAILANPRNESPWRYL 223 (320)
T ss_pred cccccccccHHHHHHHHHHHHHhCCCCcCHHHHH
Confidence 333 467888889999999887766544
|
|
| >KOG0550 consensus Molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=99.85 E-value=4.4e-19 Score=150.20 Aligned_cols=281 Identities=15% Similarity=0.112 Sum_probs=229.9
Q ss_pred hhhhhhhhhhhhhHHHHHHHHHHHHhcCCCCcchhhhcccchhhhhcChhhHHHHHHHHHHhCCCChhHHHHHHHHHHHh
Q 012143 9 EVEGKKINKLGKCRSRISSKMDSALEFGVDADGDQSGLGTSSSSREEKVSSLKTGLVHVARKMPKNAHAHFLLGLMYQRL 88 (470)
Q Consensus 9 ~~~~~~~~~~g~~~~a~~~~~~~~l~~~p~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~l~~~~~~~ 88 (470)
..+|+.+.+..+|.+++ ..+..+++..|+++..|...+.. +...+++++|.-..++.++.+|..+..+...+.++...
T Consensus 53 k~~gn~~yk~k~Y~nal-~~yt~Ai~~~pd~a~yy~nRAa~-~m~~~~~~~a~~dar~~~r~kd~~~k~~~r~~~c~~a~ 130 (486)
T KOG0550|consen 53 KEEGNAFYKQKTYGNAL-KNYTFAIDMCPDNASYYSNRAAT-LMMLGRFEEALGDARQSVRLKDGFSKGQLREGQCHLAL 130 (486)
T ss_pred HhhcchHHHHhhHHHHH-HHHHHHHHhCccchhhhchhHHH-HHHHHhHhhcccchhhheecCCCccccccchhhhhhhh
Confidence 34677889999999999 99999999999999999999999 99999999999999999999999999999999999999
Q ss_pred CChhHHHHHHHHHH-----HHHhhhhccc---chhhhHHHHHHhhhccccccccCCCccccccCcccHHHHHHHHHHhhh
Q 012143 89 GQPLKAVSSYEKAE-----EILLRCEADI---ARPELLSLVQIHHAQCLLPESSGDNSLDKELEPEELEEILSKLKESMQ 160 (470)
Q Consensus 89 g~~~~A~~~~~~al-----~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~ 160 (470)
++..+|...|+..- ...|.-+... ..+........+. +.+ +...|++++|...--..++
T Consensus 131 ~~~i~A~~~~~~~~~~~~anal~~~~~~~~s~s~~pac~~a~~lk--a~c-----------l~~~~~~~~a~~ea~~ilk 197 (486)
T KOG0550|consen 131 SDLIEAEEKLKSKQAYKAANALPTLEKLAPSHSREPACFKAKLLK--AEC-----------LAFLGDYDEAQSEAIDILK 197 (486)
T ss_pred HHHHHHHHHhhhhhhhHHhhhhhhhhcccccccCCchhhHHHHhh--hhh-----------hhhcccchhHHHHHHHHHh
Confidence 99988887776321 0001100000 0000001111111 112 3456778999999999999
Q ss_pred cCccchHHHHHHHHHHHHcCChHHHHHHHHHHhhcCCCCh------------HHHHHHHHHHHHcCCHHHHHHHHHHHHh
Q 012143 161 SDTRQAVVWNTLGLILLKSGRLQSSISVLSSLLAVDPNNC------------DCIGNLGIAYFQSGDMEQSAKCFQDLIL 228 (470)
Q Consensus 161 ~~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~------------~~~~~la~~~~~~g~~~~A~~~~~~~l~ 228 (470)
.++.+.++++..|.++...++.+.|+..|++++.++|+.. ..+...|.-.++.|++..|.+.|..+|.
T Consensus 198 ld~~n~~al~vrg~~~yy~~~~~ka~~hf~qal~ldpdh~~sk~~~~~~k~le~~k~~gN~~fk~G~y~~A~E~Yteal~ 277 (486)
T KOG0550|consen 198 LDATNAEALYVRGLCLYYNDNADKAINHFQQALRLDPDHQKSKSASMMPKKLEVKKERGNDAFKNGNYRKAYECYTEALN 277 (486)
T ss_pred cccchhHHHHhcccccccccchHHHHHHHhhhhccChhhhhHHhHhhhHHHHHHHHhhhhhHhhccchhHHHHHHHHhhc
Confidence 9999999999999999999999999999999999999864 3577888999999999999999999999
Q ss_pred hCCCChHHHHHHHHHHHhhhcccccccccchhhhhHHHhcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCChhHH
Q 012143 229 KDQNHPAALINYAALLLCKYGSVLAGAGANTGEGACLDQASAVNVAKECLLAALKADPKAAHIWANLANAYYLTGDHRSS 308 (470)
Q Consensus 229 ~~p~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~la~~~~~~g~~~~A 308 (470)
++|++.... +.+|.. .+.+..+.|+..+|+...+.+++++|....++...|.++..+++|++|
T Consensus 278 idP~n~~~n---aklY~n--------------ra~v~~rLgrl~eaisdc~~Al~iD~syikall~ra~c~l~le~~e~A 340 (486)
T KOG0550|consen 278 IDPSNKKTN---AKLYGN--------------RALVNIRLGRLREAISDCNEALKIDSSYIKALLRRANCHLALEKWEEA 340 (486)
T ss_pred CCccccchh---HHHHHH--------------hHhhhcccCCchhhhhhhhhhhhcCHHHHHHHHHHHHHHHHHHHHHHH
Confidence 999876432 222221 234445899999999999999999999999999999999999999999
Q ss_pred HHHHHHHHhcCCC
Q 012143 309 GKCLEKAAKLEPN 321 (470)
Q Consensus 309 ~~~~~~a~~~~p~ 321 (470)
++.|+++++...+
T Consensus 341 V~d~~~a~q~~~s 353 (486)
T KOG0550|consen 341 VEDYEKAMQLEKD 353 (486)
T ss_pred HHHHHHHHhhccc
Confidence 9999999998766
|
|
| >KOG1174 consensus Anaphase-promoting complex (APC), subunit 7 [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=99.84 E-value=3e-19 Score=151.12 Aligned_cols=271 Identities=13% Similarity=0.046 Sum_probs=175.5
Q ss_pred hhhhhhhhhhHHHHHHHHHHHHhcCCCCcchhhhcccchhhhhcChhhHHHHHHHHHHhCCCChhHHHHHHHHHHHhCCh
Q 012143 12 GKKINKLGKCRSRISSKMDSALEFGVDADGDQSGLGTSSSSREEKVSSLKTGLVHVARKMPKNAHAHFLLGLMYQRLGQP 91 (470)
Q Consensus 12 ~~~~~~~g~~~~a~~~~~~~~l~~~p~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~l~~~~~~~g~~ 91 (470)
|+.++..|+..+++ ..|+++..++|....+.-..|.. +...|++++-.......+..+.....-|+.-|...+...++
T Consensus 239 ak~~~~~Gdn~~a~-~~Fe~~~~~dpy~i~~MD~Ya~L-L~~eg~~e~~~~L~~~Lf~~~~~ta~~wfV~~~~l~~~K~~ 316 (564)
T KOG1174|consen 239 GKCLYYNGDYFQAE-DIFSSTLCANPDNVEAMDLYAVL-LGQEGGCEQDSALMDYLFAKVKYTASHWFVHAQLLYDEKKF 316 (564)
T ss_pred hhhhhhhcCchHHH-HHHHHHhhCChhhhhhHHHHHHH-HHhccCHhhHHHHHHHHHhhhhcchhhhhhhhhhhhhhhhH
Confidence 45555566666666 56666666666665555555555 55666666666655555555555555566566666666666
Q ss_pred hHHHHHHHHHHHHHhhhhcccchhhhHHHHHHhhhccccccccCCCccccccCcccHHHHHHHHHHhhhcCccchHHHHH
Q 012143 92 LKAVSSYEKAEEILLRCEADIARPELLSLVQIHHAQCLLPESSGDNSLDKELEPEELEEILSKLKESMQSDTRQAVVWNT 171 (470)
Q Consensus 92 ~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~ 171 (470)
..|+.+-+++++.+|++- +.+ ...|.+ ++..|+.++|+-.|+.+..+.|.+-++|..
T Consensus 317 ~rAL~~~eK~I~~~~r~~-----~al-------ilKG~l-----------L~~~~R~~~A~IaFR~Aq~Lap~rL~~Y~G 373 (564)
T KOG1174|consen 317 ERALNFVEKCIDSEPRNH-----EAL-------ILKGRL-----------LIALERHTQAVIAFRTAQMLAPYRLEIYRG 373 (564)
T ss_pred HHHHHHHHHHhccCcccc-----hHH-------HhccHH-----------HHhccchHHHHHHHHHHHhcchhhHHHHHH
Confidence 666666666666554431 111 111111 234444566666666666666666666666
Q ss_pred HHHHHHHcCChHHHHHHHHHHhhcCCCChHHHHHHH-HHH-HHcCCHHHHHHHHHHHHhhCCCChHHHHHHHHHHHhhhc
Q 012143 172 LGLILLKSGRLQSSISVLSSLLAVDPNNCDCIGNLG-IAY-FQSGDMEQSAKCFQDLILKDQNHPAALINYAALLLCKYG 249 (470)
Q Consensus 172 l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~la-~~~-~~~g~~~~A~~~~~~~l~~~p~~~~~~~~l~~~~~~~~~ 249 (470)
+-.+|...|++.+|...-+.++..-|.+..++..+| .++ ....--++|.+.++++++++|....+...++.++.
T Consensus 374 L~hsYLA~~~~kEA~~~An~~~~~~~~sA~~LtL~g~~V~~~dp~~rEKAKkf~ek~L~~~P~Y~~AV~~~AEL~~---- 449 (564)
T KOG1174|consen 374 LFHSYLAQKRFKEANALANWTIRLFQNSARSLTLFGTLVLFPDPRMREKAKKFAEKSLKINPIYTPAVNLIAELCQ---- 449 (564)
T ss_pred HHHHHHhhchHHHHHHHHHHHHHHhhcchhhhhhhcceeeccCchhHHHHHHHHHhhhccCCccHHHHHHHHHHHH----
Confidence 666666666666666666666666666666665554 222 22333456666666666666666666666665555
Q ss_pred ccccccccchhhhhHHHhcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCChhHHHHHHHHHHhcCCCcccHHHHH
Q 012143 250 SVLAGAGANTGEGACLDQASAVNVAKECLLAALKADPKAAHIWANLANAYYLTGDHRSSGKCLEKAAKLEPNCMSTRYAV 329 (470)
Q Consensus 250 ~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~p~~~~~~~~l 329 (470)
..|.+++++..+++.+...|+ ...+..||.++...+.+++|+.+|..++.++|++..+..++
T Consensus 450 -----------------~Eg~~~D~i~LLe~~L~~~~D-~~LH~~Lgd~~~A~Ne~Q~am~~y~~ALr~dP~~~~sl~Gl 511 (564)
T KOG1174|consen 450 -----------------VEGPTKDIIKLLEKHLIIFPD-VNLHNHLGDIMRAQNEPQKAMEYYYKALRQDPKSKRTLRGL 511 (564)
T ss_pred -----------------hhCccchHHHHHHHHHhhccc-cHHHHHHHHHHHHhhhHHHHHHHHHHHHhcCccchHHHHHH
Confidence 799999999999999999887 67899999999999999999999999999999987666544
|
|
| >PLN03218 maturation of RBCL 1; Provisional | Back alignment and domain information |
|---|
Probab=99.84 E-value=1.2e-16 Score=159.91 Aligned_cols=356 Identities=11% Similarity=0.024 Sum_probs=259.7
Q ss_pred hhhhhhhHHHHHHHHHHHHhcCCCCcchhhhcccchhhhhcChhhHHHHHHHHHHhCC-CChhHHHHHHHHHHHhCChhH
Q 012143 15 INKLGKCRSRISSKMDSALEFGVDADGDQSGLGTSSSSREEKVSSLKTGLVHVARKMP-KNAHAHFLLGLMYQRLGQPLK 93 (470)
Q Consensus 15 ~~~~g~~~~a~~~~~~~~l~~~p~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~p-~~~~~~~~l~~~~~~~g~~~~ 93 (470)
+.+.|...++. ..+..... | +...|..+-.. +...|+++.|...|.++.+... .+...+..+...|.+.|++++
T Consensus 416 ~~~~g~~~eAl-~lf~~M~~--p-d~~Tyn~LL~a-~~k~g~~e~A~~lf~~M~~~Gl~pD~~tynsLI~~y~k~G~vd~ 490 (1060)
T PLN03218 416 CKKQRAVKEAF-RFAKLIRN--P-TLSTFNMLMSV-CASSQDIDGALRVLRLVQEAGLKADCKLYTTLISTCAKSGKVDA 490 (1060)
T ss_pred HHHCCCHHHHH-HHHHHcCC--C-CHHHHHHHHHH-HHhCcCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhCcCHHH
Confidence 45667788887 55544433 4 44566666666 7888999999999999887653 357788999999999999999
Q ss_pred HHHHHHHHHHHHhhhhcccchhhhHHHHHHhhhccccccccCCCccccccCcccHHHHHHHHHHhhhcC-ccchHHHHHH
Q 012143 94 AVSSYEKAEEILLRCEADIARPELLSLVQIHHAQCLLPESSGDNSLDKELEPEELEEILSKLKESMQSD-TRQAVVWNTL 172 (470)
Q Consensus 94 A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~-p~~~~~~~~l 172 (470)
|...|+++.+.... |+.. .|..+... +.+.|++++|+..|.++.... ..+...|..+
T Consensus 491 A~~vf~eM~~~Gv~-------Pdvv----TynaLI~g-----------y~k~G~~eeAl~lf~~M~~~Gv~PD~vTYnsL 548 (1060)
T PLN03218 491 MFEVFHEMVNAGVE-------ANVH----TFGALIDG-----------CARAGQVAKAFGAYGIMRSKNVKPDRVVFNAL 548 (1060)
T ss_pred HHHHHHHHHHcCCC-------CCHH----HHHHHHHH-----------HHHCcCHHHHHHHHHHHHHcCCCCCHHHHHHH
Confidence 99999998875332 2221 12222222 346678899999999987643 2346788899
Q ss_pred HHHHHHcCChHHHHHHHHHHhhc----CCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC-CCChHHHHHHHHHHHhh
Q 012143 173 GLILLKSGRLQSSISVLSSLLAV----DPNNCDCIGNLGIAYFQSGDMEQSAKCFQDLILKD-QNHPAALINYAALLLCK 247 (470)
Q Consensus 173 ~~~~~~~~~~~~A~~~~~~a~~~----~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~-p~~~~~~~~l~~~~~~~ 247 (470)
...+.+.|++++|.+.|.+.... .|+ ...+..+...|.+.|++++|.+.|+.+.+.+ +.+...|..+...+.
T Consensus 549 I~a~~k~G~~deA~~lf~eM~~~~~gi~PD-~vTynaLI~ay~k~G~ldeA~elf~~M~e~gi~p~~~tynsLI~ay~-- 625 (1060)
T PLN03218 549 ISACGQSGAVDRAFDVLAEMKAETHPIDPD-HITVGALMKACANAGQVDRAKEVYQMIHEYNIKGTPEVYTIAVNSCS-- 625 (1060)
T ss_pred HHHHHHCCCHHHHHHHHHHHHHhcCCCCCc-HHHHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCCChHHHHHHHHHHH--
Confidence 99999999999999999998753 443 5788889999999999999999999998876 456677777777776
Q ss_pred hcccccccccchhhhhHHHhcCCHHHHHHHHHHHHhc--CCCCHHHHHHHHHHHHHcCChhHHHHHHHHHHhcCCCc-cc
Q 012143 248 YGSVLAGAGANTGEGACLDQASAVNVAKECLLAALKA--DPKAAHIWANLANAYYLTGDHRSSGKCLEKAAKLEPNC-MS 324 (470)
Q Consensus 248 ~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~--~p~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~p~~-~~ 324 (470)
+.|++++|+.+|.++.+. .|+ ...|..+...+.+.|++++|...++.+.+..... ..
T Consensus 626 -------------------k~G~~deAl~lf~eM~~~Gv~PD-~~TynsLI~a~~k~G~~eeA~~l~~eM~k~G~~pd~~ 685 (1060)
T PLN03218 626 -------------------QKGDWDFALSIYDDMKKKGVKPD-EVFFSALVDVAGHAGDLDKAFEILQDARKQGIKLGTV 685 (1060)
T ss_pred -------------------hcCCHHHHHHHHHHHHHcCCCCC-HHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCHH
Confidence 799999999999998876 454 7788999999999999999999999998765322 22
Q ss_pred HHHHHHHHHHHHhhhccCchHHhhhhHHHHHHHhhcCCCCCCCcHHHHHHHHHHHhccccHHHHHHHHHHHhc---chhh
Q 012143 325 TRYAVAVSRIKDAERSQEPTEQLSWAGNEMASILREGDPVQIEPPIAWAGFAAVQKTHHEVAAAFETEENELS---KMEE 401 (470)
Q Consensus 325 ~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~---~~~~ 401 (470)
.+..+.. .+. .....+.....+..+ ... ... .+...|..+...+.+.|++++|++.+..... ..+.
T Consensus 686 tynsLI~-ay~----k~G~~eeA~~lf~eM---~~~--g~~-PdvvtyN~LI~gy~k~G~~eeAlelf~eM~~~Gi~Pd~ 754 (1060)
T PLN03218 686 SYSSLMG-ACS----NAKNWKKALELYEDI---KSI--KLR-PTVSTMNALITALCEGNQLPKALEVLSEMKRLGLCPNT 754 (1060)
T ss_pred HHHHHHH-HHH----hCCCHHHHHHHHHHH---HHc--CCC-CCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCCCH
Confidence 2222221 111 112222222222222 111 122 2456899999999999999999999997443 2233
Q ss_pred hhHhhHHHHHHHhccHHHHHHHHHHHHhcC
Q 012143 402 CAGAGESAFLDQASAVNVAKECLLAALKAD 431 (470)
Q Consensus 402 ~~~~~l~~~~~~~~~~~~A~~~~~~al~~~ 431 (470)
..+..+...+.+.|++++|..++.++++..
T Consensus 755 ~Ty~sLL~a~~k~G~le~A~~l~~~M~k~G 784 (1060)
T PLN03218 755 ITYSILLVASERKDDADVGLDLLSQAKEDG 784 (1060)
T ss_pred HHHHHHHHHHHHCCCHHHHHHHHHHHHHcC
Confidence 456677788999999999999999998853
|
|
| >KOG1156 consensus N-terminal acetyltransferase [Chromatin structure and dynamics] | Back alignment and domain information |
|---|
Probab=99.84 E-value=7.9e-17 Score=144.33 Aligned_cols=403 Identities=13% Similarity=0.078 Sum_probs=295.2
Q ss_pred hhhhhhhhhhHHHHHHHHHHHHhcCCCCcchhhhcccchhhhhcChhhHHHHHHHHHHhCCCChhHHHHHHHHHHHhCCh
Q 012143 12 GKKINKLGKCRSRISSKMDSALEFGVDADGDQSGLGTSSSSREEKVSSLKTGLVHVARKMPKNAHAHFLLGLMYQRLGQP 91 (470)
Q Consensus 12 ~~~~~~~g~~~~a~~~~~~~~l~~~p~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~l~~~~~~~g~~ 91 (470)
....++.+.|.... ...+..|...|++.+.....|.. +...|+-++|.......+..++.+...|+.+|.++....+|
T Consensus 14 ~lk~yE~kQYkkgL-K~~~~iL~k~~eHgeslAmkGL~-L~~lg~~~ea~~~vr~glr~d~~S~vCwHv~gl~~R~dK~Y 91 (700)
T KOG1156|consen 14 ALKCYETKQYKKGL-KLIKQILKKFPEHGESLAMKGLT-LNCLGKKEEAYELVRLGLRNDLKSHVCWHVLGLLQRSDKKY 91 (700)
T ss_pred HHHHHHHHHHHhHH-HHHHHHHHhCCccchhHHhccch-hhcccchHHHHHHHHHHhccCcccchhHHHHHHHHhhhhhH
Confidence 34567888999998 88999999999999999999999 99999999999999999999999999999999999999999
Q ss_pred hHHHHHHHHHHHHHhhhhcccchhhhHHHHHHhhhccccccccCCCccccccCcccHHHHHHHHHHhhhcCccchHHHHH
Q 012143 92 LKAVSSYEKAEEILLRCEADIARPELLSLVQIHHAQCLLPESSGDNSLDKELEPEELEEILSKLKESMQSDTRQAVVWNT 171 (470)
Q Consensus 92 ~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~ 171 (470)
++|+.+|+.|+.+.|++. .+++.++.+. .+.++++-....-.+.++..|..-..|..
T Consensus 92 ~eaiKcy~nAl~~~~dN~------------qilrDlslLQ-----------~QmRd~~~~~~tr~~LLql~~~~ra~w~~ 148 (700)
T KOG1156|consen 92 DEAIKCYRNALKIEKDNL------------QILRDLSLLQ-----------IQMRDYEGYLETRNQLLQLRPSQRASWIG 148 (700)
T ss_pred HHHHHHHHHHHhcCCCcH------------HHHHHHHHHH-----------HHHHhhhhHHHHHHHHHHhhhhhHHHHHH
Confidence 999999999999987753 3444455443 34566688888888999999999999999
Q ss_pred HHHHHHHcCChHHHHHHHHHHhhcC---CCC-----hHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCChHHHHHHHHH
Q 012143 172 LGLILLKSGRLQSSISVLSSLLAVD---PNN-----CDCIGNLGIAYFQSGDMEQSAKCFQDLILKDQNHPAALINYAAL 243 (470)
Q Consensus 172 l~~~~~~~~~~~~A~~~~~~a~~~~---~~~-----~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~l~~~ 243 (470)
.+..+...|++..|....+...+.. |+. ..+......+....|.+++|.+.+..--. .....++..
T Consensus 149 ~Avs~~L~g~y~~A~~il~ef~~t~~~~~s~~~~e~se~~Ly~n~i~~E~g~~q~ale~L~~~e~------~i~Dkla~~ 222 (700)
T KOG1156|consen 149 FAVAQHLLGEYKMALEILEEFEKTQNTSPSKEDYEHSELLLYQNQILIEAGSLQKALEHLLDNEK------QIVDKLAFE 222 (700)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhccCCCHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHhhhh------HHHHHHHHh
Confidence 9999999999999999988877654 332 23555666777888888888877765322 222223322
Q ss_pred HHhhhcccccccccchhhhhHHHhcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCChhHHH-HHHHHHHhcCCCc
Q 012143 244 LLCKYGSVLAGAGANTGEGACLDQASAVNVAKECLLAALKADPKAAHIWANLANAYYLTGDHRSSG-KCLEKAAKLEPNC 322 (470)
Q Consensus 244 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~la~~~~~~g~~~~A~-~~~~~a~~~~p~~ 322 (470)
.. .+.++.+.+++++|+..|...+..+|++...+..+-.++..-.+.-+++ ..|...-+..|..
T Consensus 223 e~---------------ka~l~~kl~~lEeA~~~y~~Ll~rnPdn~~Yy~~l~~~lgk~~d~~~~lk~ly~~ls~~y~r~ 287 (700)
T KOG1156|consen 223 ET---------------KADLLMKLGQLEEAVKVYRRLLERNPDNLDYYEGLEKALGKIKDMLEALKALYAILSEKYPRH 287 (700)
T ss_pred hh---------------HHHHHHHHhhHHhHHHHHHHHHhhCchhHHHHHHHHHHHHHHhhhHHHHHHHHHHHhhcCccc
Confidence 22 3556668999999999999999999999999998888886444444555 5565555544443
Q ss_pred ccHHH-HHHH-----------HHHH---------------HhhhccCchHHhhhhHHHHHHHhhcCCCC--------CCC
Q 012143 323 MSTRY-AVAV-----------SRIK---------------DAERSQEPTEQLSWAGNEMASILREGDPV--------QIE 367 (470)
Q Consensus 323 ~~~~~-~l~~-----------~~~~---------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--------~~~ 367 (470)
..... .+.. ..+. ..........-+......+...+...... .|.
T Consensus 288 e~p~Rlplsvl~~eel~~~vdkyL~~~l~Kg~p~vf~dl~SLyk~p~k~~~le~Lvt~y~~~L~~~~~f~~~D~~~~E~P 367 (700)
T KOG1156|consen 288 ECPRRLPLSVLNGEELKEIVDKYLRPLLSKGVPSVFKDLRSLYKDPEKVAFLEKLVTSYQHSLSGTGMFNFLDDGKQEPP 367 (700)
T ss_pred ccchhccHHHhCcchhHHHHHHHHHHHhhcCCCchhhhhHHHHhchhHhHHHHHHHHHHHhhcccccCCCcccccccCCc
Confidence 22111 0000 0000 00111111111112222222222222111 133
Q ss_pred cHH--HHHHHHHHHhccccHHHHHHHHHHHhcchhh--hhHhhHHHHHHHhccHHHHHHHHHHHHhcCCCcHHHHHHHHH
Q 012143 368 PPI--AWAGFAAVQKTHHEVAAAFETEENELSKMEE--CAGAGESAFLDQASAVNVAKECLLAALKADPKAAHIWANLAN 443 (470)
Q Consensus 368 ~~~--~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~--~~~~~l~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~ 443 (470)
.+. .++.++..+...|+++.|......+++..|. +.+..-|.++...|++++|..+++.+.+++-.+..+-..-|.
T Consensus 368 ttllWt~y~laqh~D~~g~~~~A~~yId~AIdHTPTliEly~~KaRI~kH~G~l~eAa~~l~ea~elD~aDR~INsKcAK 447 (700)
T KOG1156|consen 368 TTLLWTLYFLAQHYDKLGDYEVALEYIDLAIDHTPTLIELYLVKARIFKHAGLLDEAAAWLDEAQELDTADRAINSKCAK 447 (700)
T ss_pred hHHHHHHHHHHHHHHHcccHHHHHHHHHHHhccCchHHHHHHHHHHHHHhcCChHHHHHHHHHHHhccchhHHHHHHHHH
Confidence 333 4467888899999999999999999885544 667788999999999999999999999998766666556788
Q ss_pred HHHHcCChHHHHHHHHH
Q 012143 444 AYYLTGDHRSSGKCLEK 460 (470)
Q Consensus 444 ~~~~~g~~~~A~~~~~~ 460 (470)
-..+.++.++|.+...+
T Consensus 448 YmLrAn~i~eA~~~~sk 464 (700)
T KOG1156|consen 448 YMLRANEIEEAEEVLSK 464 (700)
T ss_pred HHHHccccHHHHHHHHH
Confidence 88889999999887654
|
|
| >KOG1129 consensus TPR repeat-containing protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.83 E-value=7.7e-20 Score=150.09 Aligned_cols=240 Identities=17% Similarity=0.223 Sum_probs=197.3
Q ss_pred hcccchhhhhcChhhHHHHHHHHHHhCCCChhHHHHHHHHHHHhCChhHHHHHHHHHHHHHhhhhcccchhhhHHHHHHh
Q 012143 45 GLGTSSSSREEKVSSLKTGLVHVARKMPKNAHAHFLLGLMYQRLGQPLKAVSSYEKAEEILLRCEADIARPELLSLVQIH 124 (470)
Q Consensus 45 ~~~~~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~ 124 (470)
.+|.+ ++..|-+.+|.+.|+..++..| .++.+..|+.+|.+..++..|+..|.+.++..|.+-. -....++++
T Consensus 228 Q~gkC-ylrLgm~r~AekqlqssL~q~~-~~dTfllLskvY~ridQP~~AL~~~~~gld~fP~~VT-----~l~g~ARi~ 300 (478)
T KOG1129|consen 228 QMGKC-YLRLGMPRRAEKQLQSSLTQFP-HPDTFLLLSKVYQRIDQPERALLVIGEGLDSFPFDVT-----YLLGQARIH 300 (478)
T ss_pred HHHHH-HHHhcChhhhHHHHHHHhhcCC-chhHHHHHHHHHHHhccHHHHHHHHhhhhhcCCchhh-----hhhhhHHHH
Confidence 68888 8888889999999988888666 4788888899999999999999999998888776532 223333333
Q ss_pred hhccccccccCCCccccccCcccHHHHHHHHHHhhhcCccchHHHHHHHHHHHHcCChHHHHHHHHHHhhcCCCChHHHH
Q 012143 125 HAQCLLPESSGDNSLDKELEPEELEEILSKLKESMQSDTRQAVVWNTLGLILLKSGRLQSSISVLSSLLAVDPNNCDCIG 204 (470)
Q Consensus 125 ~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~ 204 (470)
. ..++.++|+++|+.+++.+|.+.++.--+|.-|+-.++++-|+.+|++.+++.-.+++.+.
T Consensus 301 e------------------am~~~~~a~~lYk~vlk~~~~nvEaiAcia~~yfY~~~PE~AlryYRRiLqmG~~speLf~ 362 (478)
T KOG1129|consen 301 E------------------AMEQQEDALQLYKLVLKLHPINVEAIACIAVGYFYDNNPEMALRYYRRILQMGAQSPELFC 362 (478)
T ss_pred H------------------HHHhHHHHHHHHHHHHhcCCccceeeeeeeeccccCCChHHHHHHHHHHHHhcCCChHHHh
Confidence 2 3355688999999999999999888888888888899999999999999999888899999
Q ss_pred HHHHHHHHcCCHHHHHHHHHHHHhhCC---CChHHHHHHHHHHHhhhcccccccccchhhhhHHHhcCCHHHHHHHHHHH
Q 012143 205 NLGIAYFQSGDMEQSAKCFQDLILKDQ---NHPAALINYAALLLCKYGSVLAGAGANTGEGACLDQASAVNVAKECLLAA 281 (470)
Q Consensus 205 ~la~~~~~~g~~~~A~~~~~~~l~~~p---~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~ 281 (470)
++|.|.+..++++-++..|++++.... .-.+.|+++|.+.. ..|++.-|..+|+-+
T Consensus 363 NigLCC~yaqQ~D~~L~sf~RAlstat~~~~aaDvWYNlg~vaV---------------------~iGD~nlA~rcfrla 421 (478)
T KOG1129|consen 363 NIGLCCLYAQQIDLVLPSFQRALSTATQPGQAADVWYNLGFVAV---------------------TIGDFNLAKRCFRLA 421 (478)
T ss_pred hHHHHHHhhcchhhhHHHHHHHHhhccCcchhhhhhhccceeEE---------------------eccchHHHHHHHHHH
Confidence 999999999999999999999886543 33567888888877 588899999999999
Q ss_pred HhcCCCCHHHHHHHHHHHHHcCChhHHHHHHHHHHhcCCCcccHHHHHH
Q 012143 282 LKADPKAAHIWANLANAYYLTGDHRSSGKCLEKAAKLEPNCMSTRYAVA 330 (470)
Q Consensus 282 ~~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~p~~~~~~~~l~ 330 (470)
+..+|++.+++.+||.+-.+.|+.++|..++..+....|+-....++++
T Consensus 422 L~~d~~h~ealnNLavL~~r~G~i~~Arsll~~A~s~~P~m~E~~~Nl~ 470 (478)
T KOG1129|consen 422 LTSDAQHGEALNNLAVLAARSGDILGARSLLNAAKSVMPDMAEVTTNLQ 470 (478)
T ss_pred hccCcchHHHHHhHHHHHhhcCchHHHHHHHHHhhhhCcccccccccee
Confidence 9999999999999999999999999999999998888888766655543
|
|
| >PLN02789 farnesyltranstransferase | Back alignment and domain information |
|---|
Probab=99.83 E-value=6.6e-19 Score=153.33 Aligned_cols=214 Identities=16% Similarity=0.143 Sum_probs=177.9
Q ss_pred hhhhcChhhHHHHHHHHHHhCCCChhHHHHHHHHHHHhC-ChhHHHHHHHHHHHHHhhhhcccchhhhHHHHHHhhhccc
Q 012143 51 SSREEKVSSLKTGLVHVARKMPKNAHAHFLLGLMYQRLG-QPLKAVSSYEKAEEILLRCEADIARPELLSLVQIHHAQCL 129 (470)
Q Consensus 51 ~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~l~~~~~~~g-~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~ 129 (470)
+...+..++|...+.++++++|.+..+|..+|.++...| ++++++..+++++..+|++. .+|+..+.
T Consensus 47 l~~~e~serAL~lt~~aI~lnP~~ytaW~~R~~iL~~L~~~l~eeL~~~~~~i~~npkny------------qaW~~R~~ 114 (320)
T PLN02789 47 YASDERSPRALDLTADVIRLNPGNYTVWHFRRLCLEALDADLEEELDFAEDVAEDNPKNY------------QIWHHRRW 114 (320)
T ss_pred HHcCCCCHHHHHHHHHHHHHCchhHHHHHHHHHHHHHcchhHHHHHHHHHHHHHHCCcch------------HHhHHHHH
Confidence 555677889999999999999999999999999999988 57999999999999877652 23444444
Q ss_pred cccccCCCccccccCcccHHHHHHHHHHhhhcCccchHHHHHHHHHHHHcCChHHHHHHHHHHhhcCCCChHHHHHHHHH
Q 012143 130 LPESSGDNSLDKELEPEELEEILSKLKESMQSDTRQAVVWNTLGLILLKSGRLQSSISVLSSLLAVDPNNCDCIGNLGIA 209 (470)
Q Consensus 130 ~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~la~~ 209 (470)
++..++. ...++++.++.++++.+|.+..+|..++.++...|++++|++++.++++.+|.+..+|..++.+
T Consensus 115 ~l~~l~~---------~~~~~el~~~~kal~~dpkNy~AW~~R~w~l~~l~~~~eeL~~~~~~I~~d~~N~sAW~~R~~v 185 (320)
T PLN02789 115 LAEKLGP---------DAANKELEFTRKILSLDAKNYHAWSHRQWVLRTLGGWEDELEYCHQLLEEDVRNNSAWNQRYFV 185 (320)
T ss_pred HHHHcCc---------hhhHHHHHHHHHHHHhCcccHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHCCCchhHHHHHHHH
Confidence 3333332 1136789999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHc---CCH----HHHHHHHHHHHhhCCCChHHHHHHHHHHHhhhcccccccccchhhhhHHHhcCCHHHHHHHHHHHH
Q 012143 210 YFQS---GDM----EQSAKCFQDLILKDQNHPAALINYAALLLCKYGSVLAGAGANTGEGACLDQASAVNVAKECLLAAL 282 (470)
Q Consensus 210 ~~~~---g~~----~~A~~~~~~~l~~~p~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~ 282 (470)
.... |.+ ++++.+..+++..+|++..+|..++.++..... ..++..+|++.+.+++
T Consensus 186 l~~~~~l~~~~~~~e~el~y~~~aI~~~P~N~SaW~Yl~~ll~~~~~-----------------~l~~~~~~~~~~~~~~ 248 (320)
T PLN02789 186 ITRSPLLGGLEAMRDSELKYTIDAILANPRNESPWRYLRGLFKDDKE-----------------ALVSDPEVSSVCLEVL 248 (320)
T ss_pred HHhccccccccccHHHHHHHHHHHHHhCCCCcCHHHHHHHHHhcCCc-----------------ccccchhHHHHHHHhh
Confidence 8776 333 578888999999999999999999988863100 1356678999999999
Q ss_pred hcCCCCHHHHHHHHHHHHHc
Q 012143 283 KADPKAAHIWANLANAYYLT 302 (470)
Q Consensus 283 ~~~p~~~~~~~~la~~~~~~ 302 (470)
...|.++.++..|+.+|...
T Consensus 249 ~~~~~s~~al~~l~d~~~~~ 268 (320)
T PLN02789 249 SKDSNHVFALSDLLDLLCEG 268 (320)
T ss_pred cccCCcHHHHHHHHHHHHhh
Confidence 99999999999999999864
|
|
| >PRK10747 putative protoheme IX biogenesis protein; Provisional | Back alignment and domain information |
|---|
Probab=99.83 E-value=9.7e-18 Score=153.49 Aligned_cols=265 Identities=10% Similarity=0.069 Sum_probs=198.4
Q ss_pred hhhhhhhhhhhhhHHHHHHHHHHHHhcCCCCcchhhhcccchhhhhcChhhHHHHHHHHHHhCCCChhH-HHHHHHHHHH
Q 012143 9 EVEGKKINKLGKCRSRISSKMDSALEFGVDADGDQSGLGTSSSSREEKVSSLKTGLVHVARKMPKNAHA-HFLLGLMYQR 87 (470)
Q Consensus 9 ~~~~~~~~~~g~~~~a~~~~~~~~l~~~p~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~p~~~~~-~~~l~~~~~~ 87 (470)
..+|......|++..+. ..+.+..+. ++++..++.++.......|+++.|...+.++.+.+|++..+ ....+.++..
T Consensus 88 ~~~gl~a~~eGd~~~A~-k~l~~~~~~-~~~p~l~~llaA~aA~~~g~~~~A~~~l~~A~~~~~~~~~~~~l~~a~l~l~ 165 (398)
T PRK10747 88 TEQALLKLAEGDYQQVE-KLMTRNADH-AEQPVVNYLLAAEAAQQRGDEARANQHLERAAELADNDQLPVEITRVRIQLA 165 (398)
T ss_pred HHHHHHHHhCCCHHHHH-HHHHHHHhc-ccchHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHH
Confidence 34666667779998887 555554443 22345555554441699999999999999999999998644 4455999999
Q ss_pred hCChhHHHHHHHHHHHHHhhhhcccchhhhHHHHHHhhhccccccccCCCccccccCcccHHHHHHHHHHhhhcCccchH
Q 012143 88 LGQPLKAVSSYEKAEEILLRCEADIARPELLSLVQIHHAQCLLPESSGDNSLDKELEPEELEEILSKLKESMQSDTRQAV 167 (470)
Q Consensus 88 ~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~p~~~~ 167 (470)
.|++++|+..++++.+..|++. ... ..++.+ +...|++++|+..+.+..+..+.++.
T Consensus 166 ~g~~~~Al~~l~~~~~~~P~~~------~al------~ll~~~-----------~~~~gdw~~a~~~l~~l~k~~~~~~~ 222 (398)
T PRK10747 166 RNENHAARHGVDKLLEVAPRHP------EVL------RLAEQA-----------YIRTGAWSSLLDILPSMAKAHVGDEE 222 (398)
T ss_pred CCCHHHHHHHHHHHHhcCCCCH------HHH------HHHHHH-----------HHHHHhHHHHHHHHHHHHHcCCCCHH
Confidence 9999999999999999987753 222 111111 46778999999999888877655433
Q ss_pred H--------HHHHHHHHHHcCChHHHHHHHHHHhhcCCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCChHHHHH
Q 012143 168 V--------WNTLGLILLKSGRLQSSISVLSSLLAVDPNNCDCIGNLGIAYFQSGDMEQSAKCFQDLILKDQNHPAALIN 239 (470)
Q Consensus 168 ~--------~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~ 239 (470)
. +..+........+-+...+.++..-+..|+++.+...++..+...|+.++|...++++++. |.++.....
T Consensus 223 ~~~~l~~~a~~~l~~~~~~~~~~~~l~~~w~~lp~~~~~~~~~~~~~A~~l~~~g~~~~A~~~L~~~l~~-~~~~~l~~l 301 (398)
T PRK10747 223 HRAMLEQQAWIGLMDQAMADQGSEGLKRWWKNQSRKTRHQVALQVAMAEHLIECDDHDTAQQIILDGLKR-QYDERLVLL 301 (398)
T ss_pred HHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHhCCHHHhCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhc-CCCHHHHHH
Confidence 2 2222222223334444555555554556789999999999999999999999999999994 445544333
Q ss_pred HHHHHHhhhcccccccccchhhhhHHHhcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCChhHHHHHHHHHHhcC
Q 012143 240 YAALLLCKYGSVLAGAGANTGEGACLDQASAVNVAKECLLAALKADPKAAHIWANLANAYYLTGDHRSSGKCLEKAAKLE 319 (470)
Q Consensus 240 l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~ 319 (470)
++.+ ..++++++++.+++.++.+|+++..+..+|.++...|++++|..+|+++++..
T Consensus 302 ~~~l-----------------------~~~~~~~al~~~e~~lk~~P~~~~l~l~lgrl~~~~~~~~~A~~~le~al~~~ 358 (398)
T PRK10747 302 IPRL-----------------------KTNNPEQLEKVLRQQIKQHGDTPLLWSTLGQLLMKHGEWQEASLAFRAALKQR 358 (398)
T ss_pred Hhhc-----------------------cCCChHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcC
Confidence 3332 35899999999999999999999999999999999999999999999999999
Q ss_pred CCc
Q 012143 320 PNC 322 (470)
Q Consensus 320 p~~ 322 (470)
|++
T Consensus 359 P~~ 361 (398)
T PRK10747 359 PDA 361 (398)
T ss_pred CCH
Confidence 984
|
|
| >KOG1127 consensus TPR repeat-containing protein [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=99.83 E-value=1.3e-18 Score=162.38 Aligned_cols=365 Identities=16% Similarity=0.118 Sum_probs=271.3
Q ss_pred hcChhhHHHHHHHHHHhCCCChhHHHHHHHHHHHhCChhHHHHHHHHHHHHHhhhhcccchhhhHHHHHHhhhccccccc
Q 012143 54 EEKVSSLKTGLVHVARKMPKNAHAHFLLGLMYQRLGQPLKAVSSYEKAEEILLRCEADIARPELLSLVQIHHAQCLLPES 133 (470)
Q Consensus 54 ~~~~~~A~~~~~~~l~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 133 (470)
..+...|...|-++++++|..+.++..||.+|..-.+...|..+|++|.++++.+... +...+.
T Consensus 471 rK~~~~al~ali~alrld~~~apaf~~LG~iYrd~~Dm~RA~kCf~KAFeLDatdaea------------aaa~ad---- 534 (1238)
T KOG1127|consen 471 RKNSALALHALIRALRLDVSLAPAFAFLGQIYRDSDDMKRAKKCFDKAFELDATDAEA------------AAASAD---- 534 (1238)
T ss_pred hhhHHHHHHHHHHHHhcccchhHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCchhhhh------------HHHHHH----
Confidence 4457889999999999999999999999999999999999999999999998764221 111111
Q ss_pred cCCCccccccCcccHHHHHHHHHHhhhcCccc--hHHHHHHHHHHHHcCChHHHHHHHHHHhhcCCCChHHHHHHHHHHH
Q 012143 134 SGDNSLDKELEPEELEEILSKLKESMQSDTRQ--AVVWNTLGLILLKSGRLQSSISVLSSLLAVDPNNCDCIGNLGIAYF 211 (470)
Q Consensus 134 ~~~~~~~~~~~~~~~~~A~~~~~~~~~~~p~~--~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~la~~~~ 211 (470)
.+.+..+++.|....-.+-+..|-. ...|..+|-.|...++...|+..|+.+++.+|.+..+|..+|.+|.
T Consensus 535 -------tyae~~~we~a~~I~l~~~qka~a~~~k~nW~~rG~yyLea~n~h~aV~~fQsALR~dPkD~n~W~gLGeAY~ 607 (1238)
T KOG1127|consen 535 -------TYAEESTWEEAFEICLRAAQKAPAFACKENWVQRGPYYLEAHNLHGAVCEFQSALRTDPKDYNLWLGLGEAYP 607 (1238)
T ss_pred -------HhhccccHHHHHHHHHHHhhhchHHHHHhhhhhccccccCccchhhHHHHHHHHhcCCchhHHHHHHHHHHHH
Confidence 1456777899999987777777644 3467779999999999999999999999999999999999999999
Q ss_pred HcCCHHHHHHHHHHHHhhCCCChHHHHHHHHHHHhhhcccccccccchhhhhHHHhcCCHHHHHHHHHHHHhcCCCC---
Q 012143 212 QSGDMEQSAKCFQDLILKDQNHPAALINYAALLLCKYGSVLAGAGANTGEGACLDQASAVNVAKECLLAALKADPKA--- 288 (470)
Q Consensus 212 ~~g~~~~A~~~~~~~l~~~p~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~p~~--- 288 (470)
..|++..|++.|.++..++|.+....+..+.+.. ..|+|.+|+..+...+......
T Consensus 608 ~sGry~~AlKvF~kAs~LrP~s~y~~fk~A~~ec---------------------d~GkYkeald~l~~ii~~~s~e~~~ 666 (1238)
T KOG1127|consen 608 ESGRYSHALKVFTKASLLRPLSKYGRFKEAVMEC---------------------DNGKYKEALDALGLIIYAFSLERTG 666 (1238)
T ss_pred hcCceehHHHhhhhhHhcCcHhHHHHHHHHHHHH---------------------HhhhHHHHHHHHHHHHHHHHHHHHh
Confidence 9999999999999999999999888877776665 6999999999999988765543
Q ss_pred ----HHHHHHHHHHHHHcCChhHHHHHHHHHHhcC--------CCcccHHHHHHHHH-HHHhhh----------------
Q 012143 289 ----AHIWANLANAYYLTGDHRSSGKCLEKAAKLE--------PNCMSTRYAVAVSR-IKDAER---------------- 339 (470)
Q Consensus 289 ----~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~--------p~~~~~~~~l~~~~-~~~~~~---------------- 339 (470)
.+.+..++..+...|=..+|..++++.++.. -++...|..++... +--...
T Consensus 667 q~gLaE~~ir~akd~~~~gf~~kavd~~eksie~f~~~l~h~~~~~~~~Wi~asdac~~f~q~e~~~vn~h~l~il~~q~ 746 (1238)
T KOG1127|consen 667 QNGLAESVIRDAKDSAITGFQKKAVDFFEKSIESFIVSLIHSLQSDRLQWIVASDACYIFSQEEPSIVNMHYLIILSKQL 746 (1238)
T ss_pred hhhHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHhhhhhHHHHHHHhHHHHHHHHhcccchHHHHHHHHHHHH
Confidence 4445555555555666667777776665431 12222222221100 000000
Q ss_pred ----ccCchHHhhhhHHHHHHHhhcCCCCCCCcHHHHHHHHHHHhc--------cccHHHHHHHHHHHhc--chhhhhHh
Q 012143 340 ----SQEPTEQLSWAGNEMASILREGDPVQIEPPIAWAGFAAVQKT--------HHEVAAAFETEENELS--KMEECAGA 405 (470)
Q Consensus 340 ----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~--------~~~~~~A~~~~~~~~~--~~~~~~~~ 405 (470)
.....+-+.-+.+.....+.. ...+..|+++|..|.+ +.+...|+..+++.+. ..+...|.
T Consensus 747 e~~~~l~~~d~l~Lg~~c~~~hlsl-----~~~~~~WyNLGinylr~f~~l~et~~~~~~Ai~c~KkaV~L~ann~~~Wn 821 (1238)
T KOG1127|consen 747 EKTGALKKNDLLFLGYECGIAHLSL-----AIHMYPWYNLGINYLRYFLLLGETMKDACTAIRCCKKAVSLCANNEGLWN 821 (1238)
T ss_pred HhcccCcchhHHHHHHHHhhHHHHH-----hhccchHHHHhHHHHHHHHHcCCcchhHHHHHHHHHHHHHHhhccHHHHH
Confidence 000001000111111111111 1235679999988765 2244588899988554 66667899
Q ss_pred hHHHHHHHhccHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHcCChHHHHHHHHHHHHhhccC
Q 012143 406 GESAFLDQASAVNVAKECLLAALKADPKAAHIWANLANAYYLTGDHRSSGKCLEKVLMVYCSS 468 (470)
Q Consensus 406 ~l~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~ 468 (470)
.+|.+ ...|.+.-|..+|-+.+...|.+...|.++|.++....|++.|...|.++..+.|..
T Consensus 822 aLGVl-sg~gnva~aQHCfIks~~sep~~~~~W~NlgvL~l~n~d~E~A~~af~~~qSLdP~n 883 (1238)
T KOG1127|consen 822 ALGVL-SGIGNVACAQHCFIKSRFSEPTCHCQWLNLGVLVLENQDFEHAEPAFSSVQSLDPLN 883 (1238)
T ss_pred HHHHh-hccchhhhhhhhhhhhhhccccchhheeccceeEEecccHHHhhHHHHhhhhcCchh
Confidence 99988 667899999999999999999999999999999999999999999999999887753
|
|
| >KOG1915 consensus Cell cycle control protein (crooked neck) [Cell cycle control, cell division, chromosome partitioning] | Back alignment and domain information |
|---|
Probab=99.83 E-value=4.2e-16 Score=134.67 Aligned_cols=421 Identities=12% Similarity=0.057 Sum_probs=289.6
Q ss_pred hhhhhHHHHHHHHHHHHhcCCCCcchhhhcccchhhhhcChhhHHHHHHHHHHhCCCChhHHHHHHHHHHHhCChhHHHH
Q 012143 17 KLGKCRSRISSKMDSALEFGVDADGDQSGLGTSSSSREEKVSSLKTGLVHVARKMPKNAHAHFLLGLMYQRLGQPLKAVS 96 (470)
Q Consensus 17 ~~g~~~~a~~~~~~~~l~~~p~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~l~~~~~~~g~~~~A~~ 96 (470)
++..++..-...|+..|..+--+...|...|.. -..++++..|...|++++..+..+...|...+.+-++......|..
T Consensus 50 EL~eYq~RkRkefEd~irrnR~~~~~WikYaqw-Eesq~e~~RARSv~ERALdvd~r~itLWlkYae~Emknk~vNhARN 128 (677)
T KOG1915|consen 50 ELSEYQLRKRKEFEDQIRRNRLNMQVWIKYAQW-EESQKEIQRARSVFERALDVDYRNITLWLKYAEFEMKNKQVNHARN 128 (677)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHhHHHHHHHHHHHHHHHhcccccchHHHHHHHHHHhhhhHhHHHH
Confidence 444454444356777777777788889888888 8899999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHhhhhcccchhhhHHHHHHhhhccccccccCCCccccccCcccHHHHHHHHHHhhhcCccchHHHHHHHHHH
Q 012143 97 SYEKAEEILLRCEADIARPELLSLVQIHHAQCLLPESSGDNSLDKELEPEELEEILSKLKESMQSDTRQAVVWNTLGLIL 176 (470)
Q Consensus 97 ~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~ 176 (470)
.+++|+.+.|.-+ ..|+....+-. ..|+..-|.++|++-+.-.|+ ..+|......-
T Consensus 129 v~dRAvt~lPRVd------------qlWyKY~ymEE-----------~LgNi~gaRqiferW~~w~P~-eqaW~sfI~fE 184 (677)
T KOG1915|consen 129 VWDRAVTILPRVD------------QLWYKYIYMEE-----------MLGNIAGARQIFERWMEWEPD-EQAWLSFIKFE 184 (677)
T ss_pred HHHHHHHhcchHH------------HHHHHHHHHHH-----------HhcccHHHHHHHHHHHcCCCc-HHHHHHHHHHH
Confidence 9999999876531 22333322222 234558888888888888776 46777777777
Q ss_pred HHcCChHHHHHHHHHHhhcCCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCChHH-HHHHHHHHHhhhccccccc
Q 012143 177 LKSGRLQSSISVLSSLLAVDPNNCDCIGNLGIAYFQSGDMEQSAKCFQDLILKDQNHPAA-LINYAALLLCKYGSVLAGA 255 (470)
Q Consensus 177 ~~~~~~~~A~~~~~~a~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~-~~~l~~~~~~~~~~~~~~~ 255 (470)
.+.+..+.|...|++.+-.+|+ ...|...+..-.+.|+...|...|+++++.-.++... ..-.+...+.........+
T Consensus 185 lRykeieraR~IYerfV~~HP~-v~~wikyarFE~k~g~~~~aR~VyerAie~~~~d~~~e~lfvaFA~fEe~qkE~ERa 263 (677)
T KOG1915|consen 185 LRYKEIERARSIYERFVLVHPK-VSNWIKYARFEEKHGNVALARSVYERAIEFLGDDEEAEILFVAFAEFEERQKEYERA 263 (677)
T ss_pred HHhhHHHHHHHHHHHHheeccc-HHHHHHHHHHHHhcCcHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 7778888888888888877765 5677777777778888888888888877654433221 1111111111000000000
Q ss_pred ccchh-----------------hhhHHHhcCC---HHHHH-----HHHHHHHhcCCCCHHHHHHHHHHHHHcCChhHHHH
Q 012143 256 GANTG-----------------EGACLDQASA---VNVAK-----ECLLAALKADPKAAHIWANLANAYYLTGDHRSSGK 310 (470)
Q Consensus 256 ~~~~~-----------------~~~~~~~~~~---~~~A~-----~~~~~~~~~~p~~~~~~~~la~~~~~~g~~~~A~~ 310 (470)
...+. .-..-.+-|+ .++++ -.|++.+..+|.+.++|+..-.+-...|+.+.-.+
T Consensus 264 r~iykyAld~~pk~raeeL~k~~~~fEKqfGd~~gIEd~Iv~KRk~qYE~~v~~np~nYDsWfdylrL~e~~g~~~~Ire 343 (677)
T KOG1915|consen 264 RFIYKYALDHIPKGRAEELYKKYTAFEKQFGDKEGIEDAIVGKRKFQYEKEVSKNPYNYDSWFDYLRLEESVGDKDRIRE 343 (677)
T ss_pred HHHHHHHHHhcCcccHHHHHHHHHHHHHHhcchhhhHHHHhhhhhhHHHHHHHhCCCCchHHHHHHHHHHhcCCHHHHHH
Confidence 00000 0000011222 22232 24567778899999999999999999999999999
Q ss_pred HHHHHHhcCCCcccH--HHHHHHHHHHHhhhccCchHHhhhhHHHHHHHhhcCCCCCCCcHHHHHHHHHHHhccccHHHH
Q 012143 311 CLEKAAKLEPNCMST--RYAVAVSRIKDAERSQEPTEQLSWAGNEMASILREGDPVQIEPPIAWAGFAAVQKTHHEVAAA 388 (470)
Q Consensus 311 ~~~~a~~~~p~~~~~--~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A 388 (470)
.|++|+...|....- |.......+.-+.-..-..........-...++..........+.+|...+....++.+...|
T Consensus 344 ~yErAIanvpp~~ekr~W~RYIYLWinYalyeEle~ed~ertr~vyq~~l~lIPHkkFtFaKiWlmyA~feIRq~~l~~A 423 (677)
T KOG1915|consen 344 TYERAIANVPPASEKRYWRRYIYLWINYALYEELEAEDVERTRQVYQACLDLIPHKKFTFAKIWLMYAQFEIRQLNLTGA 423 (677)
T ss_pred HHHHHHccCCchhHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHhhcCcccchHHHHHHHHHHHHHHHcccHHH
Confidence 999999888764321 111111111111111111112222223333444444445557788999999999999999999
Q ss_pred HHHHHHHhcchhhhhHh-hHHHHHHHhccHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHcCChHHHHHHHHHHHH
Q 012143 389 FETEENELSKMEECAGA-GESAFLDQASAVNVAKECLLAALKADPKAAHIWANLANAYYLTGDHRSSGKCLEKVLM 463 (470)
Q Consensus 389 ~~~~~~~~~~~~~~~~~-~l~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~ 463 (470)
.+.+-.++...|..-.+ +...+-.++++++.....|++-++-.|.+..+|...|.+-..+|+.+.|...|+-|++
T Consensus 424 RkiLG~AIG~cPK~KlFk~YIelElqL~efDRcRkLYEkfle~~Pe~c~~W~kyaElE~~LgdtdRaRaifelAi~ 499 (677)
T KOG1915|consen 424 RKILGNAIGKCPKDKLFKGYIELELQLREFDRCRKLYEKFLEFSPENCYAWSKYAELETSLGDTDRARAIFELAIS 499 (677)
T ss_pred HHHHHHHhccCCchhHHHHHHHHHHHHhhHHHHHHHHHHHHhcChHhhHHHHHHHHHHHHhhhHHHHHHHHHHHhc
Confidence 99999988876664433 5556677889999999999999999999999999999999999999999999998875
|
|
| >COG2956 Predicted N-acetylglucosaminyl transferase [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.82 E-value=5.1e-17 Score=133.57 Aligned_cols=278 Identities=15% Similarity=0.144 Sum_probs=175.9
Q ss_pred hhhcccchhhhhcChhhHHHHHHHHHHhCCCChhHHHHHHHHHHHhCChhHHHHHHHHHHHHHhhhhcccchhhhHHHHH
Q 012143 43 QSGLGTSSSSREEKVSSLKTGLVHVARKMPKNAHAHFLLGLMYQRLGQPLKAVSSYEKAEEILLRCEADIARPELLSLVQ 122 (470)
Q Consensus 43 ~~~~~~~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~ 122 (470)
-+..|.- +.-.++.++|+..|..+++.+|...+++..||.+|...|..+.|+..-+..++. | +....
T Consensus 38 ~Yv~GlN-fLLs~Q~dKAvdlF~e~l~~d~~t~e~~ltLGnLfRsRGEvDRAIRiHQ~L~~s-p---------dlT~~-- 104 (389)
T COG2956 38 DYVKGLN-FLLSNQPDKAVDLFLEMLQEDPETFEAHLTLGNLFRSRGEVDRAIRIHQTLLES-P---------DLTFE-- 104 (389)
T ss_pred HHHhHHH-HHhhcCcchHHHHHHHHHhcCchhhHHHHHHHHHHHhcchHHHHHHHHHHHhcC-C---------CCchH--
Confidence 3566777 778889999999999999999999999999999999999999999988776653 2 22100
Q ss_pred HhhhccccccccCCCccccccCcccHHHHHHHHHHhhhcCccchHHHHHHHHHHHHcCChHHHHHHHHHHhhcCCCChHH
Q 012143 123 IHHAQCLLPESSGDNSLDKELEPEELEEILSKLKESMQSDTRQAVVWNTLGLILLKSGRLQSSISVLSSLLAVDPNNCDC 202 (470)
Q Consensus 123 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~ 202 (470)
....+...+|.-|+..|-++.|...|....+...--..+
T Consensus 105 -----------------------------------------qr~lAl~qL~~Dym~aGl~DRAE~~f~~L~de~efa~~A 143 (389)
T COG2956 105 -----------------------------------------QRLLALQQLGRDYMAAGLLDRAEDIFNQLVDEGEFAEGA 143 (389)
T ss_pred -----------------------------------------HHHHHHHHHHHHHHHhhhhhHHHHHHHHHhcchhhhHHH
Confidence 112345556666666666666666666665544444556
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHhhCCCChHHHHHHHHHHHhhhcccccccccchhhhhHHHhcCCHHHHHHHHHHHH
Q 012143 203 IGNLGIAYFQSGDMEQSAKCFQDLILKDQNHPAALINYAALLLCKYGSVLAGAGANTGEGACLDQASAVNVAKECLLAAL 282 (470)
Q Consensus 203 ~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~ 282 (470)
...|..+|....+|++|++.-++..++.|..... .++..|.. ++..+....+.+.|+..+.+++
T Consensus 144 lqqLl~IYQ~treW~KAId~A~~L~k~~~q~~~~--eIAqfyCE--------------LAq~~~~~~~~d~A~~~l~kAl 207 (389)
T COG2956 144 LQQLLNIYQATREWEKAIDVAERLVKLGGQTYRV--EIAQFYCE--------------LAQQALASSDVDRARELLKKAL 207 (389)
T ss_pred HHHHHHHHHHhhHHHHHHHHHHHHHHcCCccchh--HHHHHHHH--------------HHHHHhhhhhHHHHHHHHHHHH
Confidence 6666666666666666666666666665544322 22222221 2233334566666666666666
Q ss_pred hcCCCCHHHHHHHHHHHHHcCChhHHHHHHHHHHhcCCCcccHHHHHHHHHHHHhhhccCchHHhhhhHHHHHHHhhcCC
Q 012143 283 KADPKAAHIWANLANAYYLTGDHRSSGKCLEKAAKLEPNCMSTRYAVAVSRIKDAERSQEPTEQLSWAGNEMASILREGD 362 (470)
Q Consensus 283 ~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~p~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 362 (470)
+.+|++..+-..+|.++...|+|+.|++.++.+++.+|+..
T Consensus 208 qa~~~cvRAsi~lG~v~~~~g~y~~AV~~~e~v~eQn~~yl--------------------------------------- 248 (389)
T COG2956 208 QADKKCVRASIILGRVELAKGDYQKAVEALERVLEQNPEYL--------------------------------------- 248 (389)
T ss_pred hhCccceehhhhhhHHHHhccchHHHHHHHHHHHHhChHHH---------------------------------------
Confidence 66666666666666666666666666666666666666622
Q ss_pred CCCCCcHHHHHHHHHHHhccccHHHHHHHHHHHhcchh-hhhHhhHHHHHHHhccHHHHHHHHHHHHhcCCCcH
Q 012143 363 PVQIEPPIAWAGFAAVQKTHHEVAAAFETEENELSKME-ECAGAGESAFLDQASAVNVAKECLLAALKADPKAA 435 (470)
Q Consensus 363 ~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~-~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~p~~~ 435 (470)
+.+...+..+|...|+.++....+........ ..+...++..-....-.+.|..++.+-+...|+--
T Consensus 249 ------~evl~~L~~~Y~~lg~~~~~~~fL~~~~~~~~g~~~~l~l~~lie~~~G~~~Aq~~l~~Ql~r~Pt~~ 316 (389)
T COG2956 249 ------SEVLEMLYECYAQLGKPAEGLNFLRRAMETNTGADAELMLADLIELQEGIDAAQAYLTRQLRRKPTMR 316 (389)
T ss_pred ------HHHHHHHHHHHHHhCCHHHHHHHHHHHHHccCCccHHHHHHHHHHHhhChHHHHHHHHHHHhhCCcHH
Confidence 23344455556666666666666555444222 23334444444444556677777777777777543
|
|
| >cd05804 StaR_like StaR_like; a well-conserved protein found in bacteria, plants, and animals | Back alignment and domain information |
|---|
Probab=99.82 E-value=1.1e-16 Score=146.20 Aligned_cols=208 Identities=15% Similarity=0.138 Sum_probs=154.2
Q ss_pred CCCChhHHHHHHHHHHHhCChhHHHHHHHHHHHHHhhhhcccchhhhHHHHHHhhhccccccccCCCccccccCcccHHH
Q 012143 71 MPKNAHAHFLLGLMYQRLGQPLKAVSSYEKAEEILLRCEADIARPELLSLVQIHHAQCLLPESSGDNSLDKELEPEELEE 150 (470)
Q Consensus 71 ~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 150 (470)
+|+.+.++..+|.++...|+++.|...+.++....|.+.... ......+.. +...|++++
T Consensus 2 dp~~~~a~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---------e~~~~~a~~-----------~~~~g~~~~ 61 (355)
T cd05804 2 DPDFALGHAAAALLLLLGGERPAAAAKAAAAAQALAARATER---------ERAHVEALS-----------AWIAGDLPK 61 (355)
T ss_pred CCccHHHHHHHHHHHHhcCCcchHHHHHHHHHHHhccCCCHH---------HHHHHHHHH-----------HHHcCCHHH
Confidence 788888888888888888888888888888887765432110 111111111 235677788
Q ss_pred HHHHHHHhhhcCccchHHHHHHHHHHHHcCC----hHHHHHHHHHHhhcCCCChHHHHHHHHHHHHcCCHHHHHHHHHHH
Q 012143 151 ILSKLKESMQSDTRQAVVWNTLGLILLKSGR----LQSSISVLSSLLAVDPNNCDCIGNLGIAYFQSGDMEQSAKCFQDL 226 (470)
Q Consensus 151 A~~~~~~~~~~~p~~~~~~~~l~~~~~~~~~----~~~A~~~~~~a~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~ 226 (470)
|...+++++..+|++..++.. +..+...|+ ...+...+......+|.....+..+|.++..+|++++|+..++++
T Consensus 62 A~~~~~~~l~~~P~~~~a~~~-~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~a~~~~~~G~~~~A~~~~~~a 140 (355)
T cd05804 62 ALALLEQLLDDYPRDLLALKL-HLGAFGLGDFSGMRDHVARVLPLWAPENPDYWYLLGMLAFGLEEAGQYDRAEEAARRA 140 (355)
T ss_pred HHHHHHHHHHHCCCcHHHHHH-hHHHHHhcccccCchhHHHHHhccCcCCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 888888888888888877664 555554444 444444444433456677777888888999999999999999999
Q ss_pred HhhCCCChHHHHHHHHHHHhhhcccccccccchhhhhHHHhcCCHHHHHHHHHHHHhcCCCCH----HHHHHHHHHHHHc
Q 012143 227 ILKDQNHPAALINYAALLLCKYGSVLAGAGANTGEGACLDQASAVNVAKECLLAALKADPKAA----HIWANLANAYYLT 302 (470)
Q Consensus 227 l~~~p~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~p~~~----~~~~~la~~~~~~ 302 (470)
++.+|+++..+..++.++. ..|++++|+.++.+++...|..+ ..+..+|.++...
T Consensus 141 l~~~p~~~~~~~~la~i~~---------------------~~g~~~eA~~~l~~~l~~~~~~~~~~~~~~~~la~~~~~~ 199 (355)
T cd05804 141 LELNPDDAWAVHAVAHVLE---------------------MQGRFKEGIAFMESWRDTWDCSSMLRGHNWWHLALFYLER 199 (355)
T ss_pred HhhCCCCcHHHHHHHHHHH---------------------HcCCHHHHHHHHHhhhhccCCCcchhHHHHHHHHHHHHHC
Confidence 9999998888888887776 68999999999999998876432 3466789999999
Q ss_pred CChhHHHHHHHHHHhcCC
Q 012143 303 GDHRSSGKCLEKAAKLEP 320 (470)
Q Consensus 303 g~~~~A~~~~~~a~~~~p 320 (470)
|++++|+..|++++...|
T Consensus 200 G~~~~A~~~~~~~~~~~~ 217 (355)
T cd05804 200 GDYEAALAIYDTHIAPSA 217 (355)
T ss_pred CCHHHHHHHHHHHhcccc
Confidence 999999999999876665
|
A family member from Streptomyces toyocaensis, StaR is part of a gene cluster involved in the biosynthesis of glycopeptide antibiotics (GPAs), specifically A47934. It has been speculated that StaR could be a flavoprotein hydroxylating a tyrosine sidechain. Some family members have been annotated as proteins containing tetratricopeptide (TPR) repeats, which may at least indicate mostly alpha-helical secondary structure. |
| >PLN03081 pentatricopeptide (PPR) repeat-containing protein; Provisional | Back alignment and domain information |
|---|
Probab=99.82 E-value=8.8e-17 Score=158.95 Aligned_cols=385 Identities=12% Similarity=0.098 Sum_probs=276.6
Q ss_pred hhhhhhhhHHHHHHHHHHHHhcCCC--CcchhhhcccchhhhhcChhhHHHHHHHHHHh--CCCChhHHHHHHHHHHHhC
Q 012143 14 KINKLGKCRSRISSKMDSALEFGVD--ADGDQSGLGTSSSSREEKVSSLKTGLVHVARK--MPKNAHAHFLLGLMYQRLG 89 (470)
Q Consensus 14 ~~~~~g~~~~a~~~~~~~~l~~~p~--~~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~--~p~~~~~~~~l~~~~~~~g 89 (470)
.+...|++.+|+ ..+.......|. +...+..+-.. +...++++.+...+..+.+. .| +...+..+...|.+.|
T Consensus 96 ~l~~~g~~~~Al-~~f~~m~~~~~~~~~~~t~~~ll~a-~~~~~~~~~a~~l~~~m~~~g~~~-~~~~~n~Li~~y~k~g 172 (697)
T PLN03081 96 KLVACGRHREAL-ELFEILEAGCPFTLPASTYDALVEA-CIALKSIRCVKAVYWHVESSGFEP-DQYMMNRVLLMHVKCG 172 (697)
T ss_pred HHHcCCCHHHHH-HHHHHHHhcCCCCCCHHHHHHHHHH-HHhCCCHHHHHHHHHHHHHhCCCc-chHHHHHHHHHHhcCC
Confidence 356678899998 777776654332 44556666666 77888999999999888764 34 5778899999999999
Q ss_pred ChhHHHHHHHHHHHHHhhhhcccchhhhHHHHHHhhhccccccccCCCccccccCcccHHHHHHHHHHhhhcCc--c---
Q 012143 90 QPLKAVSSYEKAEEILLRCEADIARPELLSLVQIHHAQCLLPESSGDNSLDKELEPEELEEILSKLKESMQSDT--R--- 164 (470)
Q Consensus 90 ~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~p--~--- 164 (470)
++++|...|++..+ |+ . ..|..+... +.+.|++++|+..|+++.+..+ +
T Consensus 173 ~~~~A~~lf~~m~~--~~---------~----~t~n~li~~-----------~~~~g~~~~A~~lf~~M~~~g~~p~~~t 226 (697)
T PLN03081 173 MLIDARRLFDEMPE--RN---------L----ASWGTIIGG-----------LVDAGNYREAFALFREMWEDGSDAEPRT 226 (697)
T ss_pred CHHHHHHHHhcCCC--CC---------e----eeHHHHHHH-----------HHHCcCHHHHHHHHHHHHHhCCCCChhh
Confidence 99999999998743 11 1 111111111 3466788999999999876432 1
Q ss_pred -------------------------------chHHHHHHHHHHHHcCChHHHHHHHHHHhhcCCCChHHHHHHHHHHHHc
Q 012143 165 -------------------------------QAVVWNTLGLILLKSGRLQSSISVLSSLLAVDPNNCDCIGNLGIAYFQS 213 (470)
Q Consensus 165 -------------------------------~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~la~~~~~~ 213 (470)
+..++..+...|.+.|++++|...|++. .+.+..+|..+...|.+.
T Consensus 227 ~~~ll~a~~~~~~~~~~~~l~~~~~~~g~~~d~~~~n~Li~~y~k~g~~~~A~~vf~~m---~~~~~vt~n~li~~y~~~ 303 (697)
T PLN03081 227 FVVMLRASAGLGSARAGQQLHCCVLKTGVVGDTFVSCALIDMYSKCGDIEDARCVFDGM---PEKTTVAWNSMLAGYALH 303 (697)
T ss_pred HHHHHHHHhcCCcHHHHHHHHHHHHHhCCCccceeHHHHHHHHHHCCCHHHHHHHHHhC---CCCChhHHHHHHHHHHhC
Confidence 2334556778888899999999998874 445778889999999999
Q ss_pred CCHHHHHHHHHHHHhhC-CCChHHHHHHHHHHHhhhcccccccccchhhhhHHHhcCCHHHHHHHHHHHHhcC-CCCHHH
Q 012143 214 GDMEQSAKCFQDLILKD-QNHPAALINYAALLLCKYGSVLAGAGANTGEGACLDQASAVNVAKECLLAALKAD-PKAAHI 291 (470)
Q Consensus 214 g~~~~A~~~~~~~l~~~-p~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~-p~~~~~ 291 (470)
|++++|+..|++..... ..+...+..+...+. +.|++++|.+.+..+++.. +.+..+
T Consensus 304 g~~~eA~~lf~~M~~~g~~pd~~t~~~ll~a~~---------------------~~g~~~~a~~i~~~m~~~g~~~d~~~ 362 (697)
T PLN03081 304 GYSEEALCLYYEMRDSGVSIDQFTFSIMIRIFS---------------------RLALLEHAKQAHAGLIRTGFPLDIVA 362 (697)
T ss_pred CCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHH---------------------hccchHHHHHHHHHHHHhCCCCCeee
Confidence 99999999998886542 223445555555554 7899999999999998876 456788
Q ss_pred HHHHHHHHHHcCChhHHHHHHHHHHhcCCCcccHHHHHHHHHHHHhhhccCchHHhhhhHHHHHHHhhcCCCCCCCcHHH
Q 012143 292 WANLANAYYLTGDHRSSGKCLEKAAKLEPNCMSTRYAVAVSRIKDAERSQEPTEQLSWAGNEMASILREGDPVQIEPPIA 371 (470)
Q Consensus 292 ~~~la~~~~~~g~~~~A~~~~~~a~~~~p~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 371 (470)
+..+...|.+.|++++|...|++..+ | +...|..+...... ....+ .+..-+......+ .. .+...
T Consensus 363 ~~~Li~~y~k~G~~~~A~~vf~~m~~--~-d~~t~n~lI~~y~~-----~G~~~---~A~~lf~~M~~~g--~~-Pd~~T 428 (697)
T PLN03081 363 NTALVDLYSKWGRMEDARNVFDRMPR--K-NLISWNALIAGYGN-----HGRGT---KAVEMFERMIAEG--VA-PNHVT 428 (697)
T ss_pred hHHHHHHHHHCCCHHHHHHHHHhCCC--C-CeeeHHHHHHHHHH-----cCCHH---HHHHHHHHHHHhC--CC-CCHHH
Confidence 99999999999999999999998764 3 33444433332211 11122 2222222222222 22 23567
Q ss_pred HHHHHHHHhccccHHHHHHHHHHHhcc----hhhhhHhhHHHHHHHhccHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHH
Q 012143 372 WAGFAAVQKTHHEVAAAFETEENELSK----MEECAGAGESAFLDQASAVNVAKECLLAALKADPKAAHIWANLANAYYL 447 (470)
Q Consensus 372 ~~~l~~~~~~~~~~~~A~~~~~~~~~~----~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~ 447 (470)
+..+...+...|..++|...|...... .+...+..+...+.+.|++++|.+.+++.- ..| +..+|..+...+..
T Consensus 429 ~~~ll~a~~~~g~~~~a~~~f~~m~~~~g~~p~~~~y~~li~~l~r~G~~~eA~~~~~~~~-~~p-~~~~~~~Ll~a~~~ 506 (697)
T PLN03081 429 FLAVLSACRYSGLSEQGWEIFQSMSENHRIKPRAMHYACMIELLGREGLLDEAYAMIRRAP-FKP-TVNMWAALLTACRI 506 (697)
T ss_pred HHHHHHHHhcCCcHHHHHHHHHHHHHhcCCCCCccchHhHHHHHHhcCCHHHHHHHHHHCC-CCC-CHHHHHHHHHHHHH
Confidence 888889999999999999999886532 222457788899999999999999998752 334 45679999999999
Q ss_pred cCChHHHHHHHHHHHHhhcc
Q 012143 448 TGDHRSSGKCLEKVLMVYCS 467 (470)
Q Consensus 448 ~g~~~~A~~~~~~al~~~~~ 467 (470)
.|+.+.|...+++.+++.|.
T Consensus 507 ~g~~~~a~~~~~~l~~~~p~ 526 (697)
T PLN03081 507 HKNLELGRLAAEKLYGMGPE 526 (697)
T ss_pred cCCcHHHHHHHHHHhCCCCC
Confidence 99999999999999887764
|
|
| >KOG4162 consensus Predicted calmodulin-binding protein [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=99.81 E-value=1e-17 Score=152.85 Aligned_cols=281 Identities=17% Similarity=0.201 Sum_probs=221.5
Q ss_pred hHHHHHHHHHHHHhcCCCCcchhhhcccchhhhhcChhhHHHHHHHHHHhCC-CChhHHHHHHHHHHHhCChhHHHHHHH
Q 012143 21 CRSRISSKMDSALEFGVDADGDQSGLGTSSSSREEKVSSLKTGLVHVARKMP-KNAHAHFLLGLMYQRLGQPLKAVSSYE 99 (470)
Q Consensus 21 ~~~a~~~~~~~~l~~~p~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~p-~~~~~~~~l~~~~~~~g~~~~A~~~~~ 99 (470)
..+++ +.++++++.+|.|+.+.+.++.. +..+++++.|....+++++.+| +++.+|..++.++..++++.+|+...+
T Consensus 460 h~ksl-qale~av~~d~~dp~~if~lalq-~A~~R~l~sAl~~~~eaL~l~~~~~~~~whLLALvlSa~kr~~~Al~vvd 537 (799)
T KOG4162|consen 460 HKKSL-QALEEAVQFDPTDPLVIFYLALQ-YAEQRQLTSALDYAREALALNRGDSAKAWHLLALVLSAQKRLKEALDVVD 537 (799)
T ss_pred HHHHH-HHHHHHHhcCCCCchHHHHHHHH-HHHHHhHHHHHHHHHHHHHhcCCccHHHHHHHHHHHhhhhhhHHHHHHHH
Confidence 45667 89999999999999999999999 9999999999999999999955 668999999999999999999999999
Q ss_pred HHHHHHhhhhccc---------------chhhhHHHHHHhhhccccccccCCC-----ccccccCcccHHHHHHHHHHhh
Q 012143 100 KAEEILLRCEADI---------------ARPELLSLVQIHHAQCLLPESSGDN-----SLDKELEPEELEEILSKLKESM 159 (470)
Q Consensus 100 ~al~~~~~~~~~~---------------~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~~~~~~A~~~~~~~~ 159 (470)
.+++-.|++-... ...........|...--+...+++. .....+..++..+|++.++++.
T Consensus 538 ~al~E~~~N~~l~~~~~~i~~~~~~~e~~l~t~~~~L~~we~~~~~q~~~~~g~~~~lk~~l~la~~q~~~a~s~sr~ls 617 (799)
T KOG4162|consen 538 AALEEFGDNHVLMDGKIHIELTFNDREEALDTCIHKLALWEAEYGVQQTLDEGKLLRLKAGLHLALSQPTDAISTSRYLS 617 (799)
T ss_pred HHHHHhhhhhhhchhhhhhhhhcccHHHHHHHHHHHHHHHHhhhhHhhhhhhhhhhhhhcccccCcccccccchhhHHHH
Confidence 9998876631100 0001111111122000000000000 0011223334455555555442
Q ss_pred hc---------------------Cccc-----hHHHHHHHHHHHHcCChHHHHHHHHHHhhcCCCChHHHHHHHHHHHHc
Q 012143 160 QS---------------------DTRQ-----AVVWNTLGLILLKSGRLQSSISVLSSLLAVDPNNCDCIGNLGIAYFQS 213 (470)
Q Consensus 160 ~~---------------------~p~~-----~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~la~~~~~~ 213 (470)
.. .|+. ...|...+..+...++.++|..++.++-.++|..+..|+..|.++...
T Consensus 618 ~l~a~~~~~~~se~~Lp~s~~~~~~~~~~~~~~~lwllaa~~~~~~~~~~~a~~CL~Ea~~~~~l~~~~~~~~G~~~~~~ 697 (799)
T KOG4162|consen 618 SLVASQLKSAGSELKLPSSTVLPGPDSLWYLLQKLWLLAADLFLLSGNDDEARSCLLEASKIDPLSASVYYLRGLLLEVK 697 (799)
T ss_pred HHHHhhhhhcccccccCcccccCCCCchHHHHHHHHHHHHHHHHhcCCchHHHHHHHHHHhcchhhHHHHHHhhHHHHHH
Confidence 21 1111 236778899999999999999999999999999999999999999999
Q ss_pred CCHHHHHHHHHHHHhhCCCChHHHHHHHHHHHhhhcccccccccchhhhhHHHhcCCHHHHHH--HHHHHHhcCCCCHHH
Q 012143 214 GDMEQSAKCFQDLILKDQNHPAALINYAALLLCKYGSVLAGAGANTGEGACLDQASAVNVAKE--CLLAALKADPKAAHI 291 (470)
Q Consensus 214 g~~~~A~~~~~~~l~~~p~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~--~~~~~~~~~p~~~~~ 291 (470)
|++.+|.+.|..++.++|+++.....+|.++. +.|+..-|.. .+..+++++|.++++
T Consensus 698 ~~~~EA~~af~~Al~ldP~hv~s~~Ala~~ll---------------------e~G~~~la~~~~~L~dalr~dp~n~ea 756 (799)
T KOG4162|consen 698 GQLEEAKEAFLVALALDPDHVPSMTALAELLL---------------------ELGSPRLAEKRSLLSDALRLDPLNHEA 756 (799)
T ss_pred HhhHHHHHHHHHHHhcCCCCcHHHHHHHHHHH---------------------HhCCcchHHHHHHHHHHHhhCCCCHHH
Confidence 99999999999999999999999999999988 6777777777 999999999999999
Q ss_pred HHHHHHHHHHcCChhHHHHHHHHHHhcCCCccc
Q 012143 292 WANLANAYYLTGDHRSSGKCLEKAAKLEPNCMS 324 (470)
Q Consensus 292 ~~~la~~~~~~g~~~~A~~~~~~a~~~~p~~~~ 324 (470)
|+.+|.++..+|+.++|.++|..++++.+.+|.
T Consensus 757 W~~LG~v~k~~Gd~~~Aaecf~aa~qLe~S~PV 789 (799)
T KOG4162|consen 757 WYYLGEVFKKLGDSKQAAECFQAALQLEESNPV 789 (799)
T ss_pred HHHHHHHHHHccchHHHHHHHHHHHhhccCCCc
Confidence 999999999999999999999999999988774
|
|
| >PLN03077 Protein ECB2; Provisional | Back alignment and domain information |
|---|
Probab=99.80 E-value=4.3e-16 Score=157.88 Aligned_cols=382 Identities=11% Similarity=0.062 Sum_probs=236.8
Q ss_pred hhhcccchhhhhcChhhHHHHHHHHHHhCCCChhHHHHHHHHHHHhCChhHHHHHHHHHHHHHhhhhcccchhhhHHHHH
Q 012143 43 QSGLGTSSSSREEKVSSLKTGLVHVARKMPKNAHAHFLLGLMYQRLGQPLKAVSSYEKAEEILLRCEADIARPELLSLVQ 122 (470)
Q Consensus 43 ~~~~~~~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~ 122 (470)
+..+-.. +.+.|+++.|...|+++. ..+...|..+...|.+.|++++|+..|.+....... |+......
T Consensus 225 ~n~Li~~-y~k~g~~~~A~~lf~~m~---~~d~~s~n~li~~~~~~g~~~eAl~lf~~M~~~g~~-------Pd~~ty~~ 293 (857)
T PLN03077 225 VNALITM-YVKCGDVVSARLVFDRMP---RRDCISWNAMISGYFENGECLEGLELFFTMRELSVD-------PDLMTITS 293 (857)
T ss_pred HhHHHHH-HhcCCCHHHHHHHHhcCC---CCCcchhHHHHHHHHhCCCHHHHHHHHHHHHHcCCC-------CChhHHHH
Confidence 3344444 677899999999999853 345678999999999999999999999998875432 22221111
Q ss_pred HhhhccccccccCCCccccccCcccHHHHHHHHHHhhhcC-ccchHHHHHHHHHHHHcCChHHHHHHHHHHhhcCCCChH
Q 012143 123 IHHAQCLLPESSGDNSLDKELEPEELEEILSKLKESMQSD-TRQAVVWNTLGLILLKSGRLQSSISVLSSLLAVDPNNCD 201 (470)
Q Consensus 123 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~-p~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~ 201 (470)
+... ....|+.+.|.+++..+.+.. +.+..++..+...|.+.|++++|...|++.. ..+..
T Consensus 294 ll~a---------------~~~~g~~~~a~~l~~~~~~~g~~~d~~~~n~Li~~y~k~g~~~~A~~vf~~m~---~~d~~ 355 (857)
T PLN03077 294 VISA---------------CELLGDERLGREMHGYVVKTGFAVDVSVCNSLIQMYLSLGSWGEAEKVFSRME---TKDAV 355 (857)
T ss_pred HHHH---------------HHhcCChHHHHHHHHHHHHhCCccchHHHHHHHHHHHhcCCHHHHHHHHhhCC---CCCee
Confidence 1111 123455677777777666532 2345667777777777777777777777643 23456
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHhh--CCCChHHHHHHHHHHHhhhc--------------ccccccccchhhhhHH
Q 012143 202 CIGNLGIAYFQSGDMEQSAKCFQDLILK--DQNHPAALINYAALLLCKYG--------------SVLAGAGANTGEGACL 265 (470)
Q Consensus 202 ~~~~la~~~~~~g~~~~A~~~~~~~l~~--~p~~~~~~~~l~~~~~~~~~--------------~~~~~~~~~~~~~~~~ 265 (470)
.|..+...|.+.|++++|++.|++.... .|+.... ..+...+..... ........+..+...|
T Consensus 356 s~n~li~~~~~~g~~~~A~~lf~~M~~~g~~Pd~~t~-~~ll~a~~~~g~~~~a~~l~~~~~~~g~~~~~~~~n~Li~~y 434 (857)
T PLN03077 356 SWTAMISGYEKNGLPDKALETYALMEQDNVSPDEITI-ASVLSACACLGDLDVGVKLHELAERKGLISYVVVANALIEMY 434 (857)
T ss_pred eHHHHHHHHHhCCCHHHHHHHHHHHHHhCCCCCceeH-HHHHHHHhccchHHHHHHHHHHHHHhCCCcchHHHHHHHHHH
Confidence 6777777777777777777777776543 3443322 111111111000 0001122334455667
Q ss_pred HhcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCChhHHHHHHHHHHhc-CCCcccHHHHHH-HHHHHHhhhccCc
Q 012143 266 DQASAVNVAKECLLAALKADPKAAHIWANLANAYYLTGDHRSSGKCLEKAAKL-EPNCMSTRYAVA-VSRIKDAERSQEP 343 (470)
Q Consensus 266 ~~~~~~~~A~~~~~~~~~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~-~p~~~~~~~~l~-~~~~~~~~~~~~~ 343 (470)
.+.|++++|.+.|++..+ .+...|..+...|...|+.++|+..|++.... .|+.......+. ....+.......-
T Consensus 435 ~k~g~~~~A~~vf~~m~~---~d~vs~~~mi~~~~~~g~~~eA~~lf~~m~~~~~pd~~t~~~lL~a~~~~g~l~~~~~i 511 (857)
T PLN03077 435 SKCKCIDKALEVFHNIPE---KDVISWTSIIAGLRLNNRCFEALIFFRQMLLTLKPNSVTLIAALSACARIGALMCGKEI 511 (857)
T ss_pred HHcCCHHHHHHHHHhCCC---CCeeeHHHHHHHHHHCCCHHHHHHHHHHHHhCCCCCHhHHHHHHHHHhhhchHHHhHHH
Confidence 789999999999987643 35678899999999999999999999998754 333222111111 0111000000000
Q ss_pred h-------------------HHhh--hhHHHHHHHhhcCCCCCCCcHHHHHHHHHHHhccccHHHHHHHHHHHhc---ch
Q 012143 344 T-------------------EQLS--WAGNEMASILREGDPVQIEPPIAWAGFAAVQKTHHEVAAAFETEENELS---KM 399 (470)
Q Consensus 344 ~-------------------~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~---~~ 399 (470)
. ..+. ...+.....+... ..+...|..+...|...|+.++|+..|.+... ..
T Consensus 512 ~~~~~~~g~~~~~~~~naLi~~y~k~G~~~~A~~~f~~~----~~d~~s~n~lI~~~~~~G~~~~A~~lf~~M~~~g~~P 587 (857)
T PLN03077 512 HAHVLRTGIGFDGFLPNALLDLYVRCGRMNYAWNQFNSH----EKDVVSWNILLTGYVAHGKGSMAVELFNRMVESGVNP 587 (857)
T ss_pred HHHHHHhCCCccceechHHHHHHHHcCCHHHHHHHHHhc----CCChhhHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCC
Confidence 0 0000 0011222222222 23566788888888888999999888887443 12
Q ss_pred hhhhHhhHHHHHHHhccHHHHHHHHHHHHhcCC--CcHHHHHHHHHHHHHcCChHHHHHHHHHH
Q 012143 400 EECAGAGESAFLDQASAVNVAKECLLAALKADP--KAAHIWANLANAYYLTGDHRSSGKCLEKV 461 (470)
Q Consensus 400 ~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~p--~~~~~~~~la~~~~~~g~~~~A~~~~~~a 461 (470)
+...+..+-..+.+.|++++|..+|+...+..+ -+...|..+..++.+.|+.++|.+.+++.
T Consensus 588 d~~T~~~ll~a~~~~g~v~ea~~~f~~M~~~~gi~P~~~~y~~lv~~l~r~G~~~eA~~~~~~m 651 (857)
T PLN03077 588 DEVTFISLLCACSRSGMVTQGLEYFHSMEEKYSITPNLKHYACVVDLLGRAGKLTEAYNFINKM 651 (857)
T ss_pred CcccHHHHHHHHhhcChHHHHHHHHHHHHHHhCCCCchHHHHHHHHHHHhCCCHHHHHHHHHHC
Confidence 223455555678888889999999988874332 23467888888889999999998888764
|
|
| >KOG1840 consensus Kinesin light chain [Cytoskeleton] | Back alignment and domain information |
|---|
Probab=99.80 E-value=2.8e-17 Score=149.34 Aligned_cols=244 Identities=18% Similarity=0.195 Sum_probs=197.0
Q ss_pred cCccchHHHHHHHHHHHHcCChHHHHHHHHHHhhc--------CCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC--
Q 012143 161 SDTRQAVVWNTLGLILLKSGRLQSSISVLSSLLAV--------DPNNCDCIGNLGIAYFQSGDMEQSAKCFQDLILKD-- 230 (470)
Q Consensus 161 ~~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~--------~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~-- 230 (470)
..|....+...++..|..+|++++|+..++++++. .|.-......+|.+|..++++++|+..|++++.+-
T Consensus 194 ~~P~~~~~~~~La~~y~~~g~~e~A~~l~k~Al~~l~k~~G~~hl~va~~l~~~a~~y~~~~k~~eAv~ly~~AL~i~e~ 273 (508)
T KOG1840|consen 194 EDPERLRTLRNLAEMYAVQGRLEKAEPLCKQALRILEKTSGLKHLVVASMLNILALVYRSLGKYDEAVNLYEEALTIREE 273 (508)
T ss_pred CCchHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHccCccCHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHH
Confidence 45666677888999999999999999999999998 55555666679999999999999999999999752
Q ss_pred ---CCC---hHHHHHHHHHHHhhhcccccccccchhhhhHHHhcCCHHHHHHHHHHHHhcC--------CCCHHHHHHHH
Q 012143 231 ---QNH---PAALINYAALLLCKYGSVLAGAGANTGEGACLDQASAVNVAKECLLAALKAD--------PKAAHIWANLA 296 (470)
Q Consensus 231 ---p~~---~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~--------p~~~~~~~~la 296 (470)
+++ ..++.+|+.+|. ..|++++|..++++++++. |.-...+.+++
T Consensus 274 ~~G~~h~~va~~l~nLa~ly~---------------------~~GKf~EA~~~~e~Al~I~~~~~~~~~~~v~~~l~~~~ 332 (508)
T KOG1840|consen 274 VFGEDHPAVAATLNNLAVLYY---------------------KQGKFAEAEEYCERALEIYEKLLGASHPEVAAQLSELA 332 (508)
T ss_pred hcCCCCHHHHHHHHHHHHHHh---------------------ccCChHHHHHHHHHHHHHHHHhhccChHHHHHHHHHHH
Confidence 333 344555555554 8999999999999998763 33456788899
Q ss_pred HHHHHcCChhHHHHHHHHHHhcCCCcccHHHHHHHHHHHHhhhccCchHHhhhhHHHHHHHhhcCCCCCCCcHHHHHHHH
Q 012143 297 NAYYLTGDHRSSGKCLEKAAKLEPNCMSTRYAVAVSRIKDAERSQEPTEQLSWAGNEMASILREGDPVQIEPPIAWAGFA 376 (470)
Q Consensus 297 ~~~~~~g~~~~A~~~~~~a~~~~p~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ 376 (470)
.++..++++++|..++++++++.-+-+. ...+..+..+.++|
T Consensus 333 ~~~~~~~~~Eea~~l~q~al~i~~~~~g--------------------------------------~~~~~~a~~~~nl~ 374 (508)
T KOG1840|consen 333 AILQSMNEYEEAKKLLQKALKIYLDAPG--------------------------------------EDNVNLAKIYANLA 374 (508)
T ss_pred HHHHHhcchhHHHHHHHHHHHHHHhhcc--------------------------------------ccchHHHHHHHHHH
Confidence 9999999999999999998876432110 00112356889999
Q ss_pred HHHhccccHHHHHHHHHHHhcch----------hhhhHhhHHHHHHHhccHHHHHHHHHHHHhc-------CCCcHHHHH
Q 012143 377 AVQKTHHEVAAAFETEENELSKM----------EECAGAGESAFLDQASAVNVAKECLLAALKA-------DPKAAHIWA 439 (470)
Q Consensus 377 ~~~~~~~~~~~A~~~~~~~~~~~----------~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~-------~p~~~~~~~ 439 (470)
.++..+|++.+|.+.+++++... ...+...+|..+.+.+++.+|...|..++.+ .|+....+.
T Consensus 375 ~l~~~~gk~~ea~~~~k~ai~~~~~~~~~~~~~~~~~l~~la~~~~~~k~~~~a~~l~~~~~~i~~~~g~~~~~~~~~~~ 454 (508)
T KOG1840|consen 375 ELYLKMGKYKEAEELYKKAIQILRELLGKKDYGVGKPLNQLAEAYEELKKYEEAEQLFEEAKDIMKLCGPDHPDVTYTYL 454 (508)
T ss_pred HHHHHhcchhHHHHHHHHHHHHHHhcccCcChhhhHHHHHHHHHHHHhcccchHHHHHHHHHHHHHHhCCCCCchHHHHH
Confidence 99999999999999999976522 2345778999999999999999999888765 345567889
Q ss_pred HHHHHHHHcCChHHHHHHHHHHHH
Q 012143 440 NLANAYYLTGDHRSSGKCLEKVLM 463 (470)
Q Consensus 440 ~la~~~~~~g~~~~A~~~~~~al~ 463 (470)
+||.+|..+|+++.|+++.++++.
T Consensus 455 nL~~~Y~~~g~~e~a~~~~~~~~~ 478 (508)
T KOG1840|consen 455 NLAALYRAQGNYEAAEELEEKVLN 478 (508)
T ss_pred HHHHHHHHcccHHHHHHHHHHHHH
Confidence 999999999999999999999874
|
|
| >COG2956 Predicted N-acetylglucosaminyl transferase [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.79 E-value=3.2e-16 Score=128.92 Aligned_cols=237 Identities=17% Similarity=0.146 Sum_probs=137.2
Q ss_pred HHHHHHHcCChHHHHHHHHHHhhcCCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCChHHHHHHHHHHHhhhccc
Q 012143 172 LGLILLKSGRLQSSISVLSSLLAVDPNNCDCIGNLGIAYFQSGDMEQSAKCFQDLILKDQNHPAALINYAALLLCKYGSV 251 (470)
Q Consensus 172 l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~l~~~~~~~~~~~ 251 (470)
.|.-+.-.++.++|++.|...++.+|...++...||.++...|..+.|+..-+..+. .|+.+.....++..-
T Consensus 41 ~GlNfLLs~Q~dKAvdlF~e~l~~d~~t~e~~ltLGnLfRsRGEvDRAIRiHQ~L~~-spdlT~~qr~lAl~q------- 112 (389)
T COG2956 41 KGLNFLLSNQPDKAVDLFLEMLQEDPETFEAHLTLGNLFRSRGEVDRAIRIHQTLLE-SPDLTFEQRLLALQQ------- 112 (389)
T ss_pred hHHHHHhhcCcchHHHHHHHHHhcCchhhHHHHHHHHHHHhcchHHHHHHHHHHHhc-CCCCchHHHHHHHHH-------
Confidence 344555556666677776666666666666666677777667777766666555443 344433322222211
Q ss_pred ccccccchhhhhHHHhcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCChhHHHHHHHHHHhcCCCcccHHHHHHH
Q 012143 252 LAGAGANTGEGACLDQASAVNVAKECLLAALKADPKAAHIWANLANAYYLTGDHRSSGKCLEKAAKLEPNCMSTRYAVAV 331 (470)
Q Consensus 252 ~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~p~~~~~~~~l~~ 331 (470)
+|.-|...|-++.|...|........--..+...|..+|....+|++|++.-++..++.|.......
T Consensus 113 ---------L~~Dym~aGl~DRAE~~f~~L~de~efa~~AlqqLl~IYQ~treW~KAId~A~~L~k~~~q~~~~eI---- 179 (389)
T COG2956 113 ---------LGRDYMAAGLLDRAEDIFNQLVDEGEFAEGALQQLLNIYQATREWEKAIDVAERLVKLGGQTYRVEI---- 179 (389)
T ss_pred ---------HHHHHHHhhhhhHHHHHHHHHhcchhhhHHHHHHHHHHHHHhhHHHHHHHHHHHHHHcCCccchhHH----
Confidence 2344445666666666666666544445566666666666666677776666666666665432111
Q ss_pred HHHHHhhhccCchHHhhhhHHHHHHHhhcCCCCCCCcHHHHHHHHHHHhccccHHHHHHHHHHHhc--chhhhhHhhHHH
Q 012143 332 SRIKDAERSQEPTEQLSWAGNEMASILREGDPVQIEPPIAWAGFAAVQKTHHEVAAAFETEENELS--KMEECAGAGESA 409 (470)
Q Consensus 332 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~--~~~~~~~~~l~~ 409 (470)
+..+..++..+....+.+.|...+.+++. +....+-..+|.
T Consensus 180 -------------------------------------AqfyCELAq~~~~~~~~d~A~~~l~kAlqa~~~cvRAsi~lG~ 222 (389)
T COG2956 180 -------------------------------------AQFYCELAQQALASSDVDRARELLKKALQADKKCVRASIILGR 222 (389)
T ss_pred -------------------------------------HHHHHHHHHHHhhhhhHHHHHHHHHHHHhhCccceehhhhhhH
Confidence 22444555555555555666666655443 333445555666
Q ss_pred HHHHhccHHHHHHHHHHHHhcCCCc-HHHHHHHHHHHHHcCChHHHHHHHHHHHHhhc
Q 012143 410 FLDQASAVNVAKECLLAALKADPKA-AHIWANLANAYYLTGDHRSSGKCLEKVLMVYC 466 (470)
Q Consensus 410 ~~~~~~~~~~A~~~~~~al~~~p~~-~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~ 466 (470)
+....|+|+.|++.++.+++.+|+. +.+.-.|..||.++|+.++....+.++++..+
T Consensus 223 v~~~~g~y~~AV~~~e~v~eQn~~yl~evl~~L~~~Y~~lg~~~~~~~fL~~~~~~~~ 280 (389)
T COG2956 223 VELAKGDYQKAVEALERVLEQNPEYLSEVLEMLYECYAQLGKPAEGLNFLRRAMETNT 280 (389)
T ss_pred HHHhccchHHHHHHHHHHHHhChHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHccC
Confidence 6666666666666666666666654 45555566666666666666666666655544
|
|
| >KOG1840 consensus Kinesin light chain [Cytoskeleton] | Back alignment and domain information |
|---|
Probab=99.78 E-value=4.5e-17 Score=148.05 Aligned_cols=245 Identities=16% Similarity=0.163 Sum_probs=193.9
Q ss_pred CCCCcchhhhcccchhhhhcChhhHHHHHHHHHHh--------CCCChhHHHHHHHHHHHhCChhHHHHHHHHHHHHHhh
Q 012143 36 GVDADGDQSGLGTSSSSREEKVSSLKTGLVHVARK--------MPKNAHAHFLLGLMYQRLGQPLKAVSSYEKAEEILLR 107 (470)
Q Consensus 36 ~p~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~--------~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~ 107 (470)
.|.-..+...++.. +..+|+++.|+..++.+++. +|.-......+|.+|..++++++|+..|++|+.+...
T Consensus 195 ~P~~~~~~~~La~~-y~~~g~~e~A~~l~k~Al~~l~k~~G~~hl~va~~l~~~a~~y~~~~k~~eAv~ly~~AL~i~e~ 273 (508)
T KOG1840|consen 195 DPERLRTLRNLAEM-YAVQGRLEKAEPLCKQALRILEKTSGLKHLVVASMLNILALVYRSLGKYDEAVNLYEEALTIREE 273 (508)
T ss_pred CchHHHHHHHHHHH-HHHhccHHHHHHHHHHHHHHHHHccCccCHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHH
Confidence 45555567779999 99999999999999999988 5666666677999999999999999999999997422
Q ss_pred hhcccchhhhHHHHHHhhhccccccccCCCccccccCcccHHHHHHHHHHhhhcC--------ccchHHHHHHHHHHHHc
Q 012143 108 CEADIARPELLSLVQIHHAQCLLPESSGDNSLDKELEPEELEEILSKLKESMQSD--------TRQAVVWNTLGLILLKS 179 (470)
Q Consensus 108 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~--------p~~~~~~~~l~~~~~~~ 179 (470)
. . -+.....+..+.+++.+| ...|++++|..++++++.+. |.-+..+..++.++..+
T Consensus 274 ~-~---G~~h~~va~~l~nLa~ly-----------~~~GKf~EA~~~~e~Al~I~~~~~~~~~~~v~~~l~~~~~~~~~~ 338 (508)
T KOG1840|consen 274 V-F---GEDHPAVAATLNNLAVLY-----------YKQGKFAEAEEYCERALEIYEKLLGASHPEVAAQLSELAAILQSM 338 (508)
T ss_pred h-c---CCCCHHHHHHHHHHHHHH-----------hccCChHHHHHHHHHHHHHHHHhhccChHHHHHHHHHHHHHHHHh
Confidence 1 1 122233345566666665 46677799999999998753 33455778899999999
Q ss_pred CChHHHHHHHHHHhhc--------CCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCC--------CChHHHHHHHHH
Q 012143 180 GRLQSSISVLSSLLAV--------DPNNCDCIGNLGIAYFQSGDMEQSAKCFQDLILKDQ--------NHPAALINYAAL 243 (470)
Q Consensus 180 ~~~~~A~~~~~~a~~~--------~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p--------~~~~~~~~l~~~ 243 (470)
+++++|+.++++++++ +|.-+..+.++|.+|..+|++++|.+.|++++.+.. .....+..++..
T Consensus 339 ~~~Eea~~l~q~al~i~~~~~g~~~~~~a~~~~nl~~l~~~~gk~~ea~~~~k~ai~~~~~~~~~~~~~~~~~l~~la~~ 418 (508)
T KOG1840|consen 339 NEYEEAKKLLQKALKIYLDAPGEDNVNLAKIYANLAELYLKMGKYKEAEELYKKAIQILRELLGKKDYGVGKPLNQLAEA 418 (508)
T ss_pred cchhHHHHHHHHHHHHHHhhccccchHHHHHHHHHHHHHHHhcchhHHHHHHHHHHHHHHhcccCcChhhhHHHHHHHHH
Confidence 9999999999999886 223466899999999999999999999999997642 222334445544
Q ss_pred HHhhhcccccccccchhhhhHHHhcCCHHHHHHHHHHHHhc-------CCCCHHHHHHHHHHHHHcCChhHHHHHHHHHH
Q 012143 244 LLCKYGSVLAGAGANTGEGACLDQASAVNVAKECLLAALKA-------DPKAAHIWANLANAYYLTGDHRSSGKCLEKAA 316 (470)
Q Consensus 244 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~-------~p~~~~~~~~la~~~~~~g~~~~A~~~~~~a~ 316 (470)
+ .+.+++.+|...|.+++.+ .|+....+.+|+.+|..+|+++.|+++..+++
T Consensus 419 ~---------------------~~~k~~~~a~~l~~~~~~i~~~~g~~~~~~~~~~~nL~~~Y~~~g~~e~a~~~~~~~~ 477 (508)
T KOG1840|consen 419 Y---------------------EELKKYEEAEQLFEEAKDIMKLCGPDHPDVTYTYLNLAALYRAQGNYEAAEELEEKVL 477 (508)
T ss_pred H---------------------HHhcccchHHHHHHHHHHHHHHhCCCCCchHHHHHHHHHHHHHcccHHHHHHHHHHHH
Confidence 4 4788999999999888765 45567789999999999999999999999988
Q ss_pred h
Q 012143 317 K 317 (470)
Q Consensus 317 ~ 317 (470)
.
T Consensus 478 ~ 478 (508)
T KOG1840|consen 478 N 478 (508)
T ss_pred H
Confidence 4
|
|
| >KOG1915 consensus Cell cycle control protein (crooked neck) [Cell cycle control, cell division, chromosome partitioning] | Back alignment and domain information |
|---|
Probab=99.76 E-value=8.6e-14 Score=120.62 Aligned_cols=421 Identities=13% Similarity=0.051 Sum_probs=283.4
Q ss_pred hhhhHHHHHHHHHHHHhcCCCCcchhhhcccchhhhhcChhhHHHHHHHHHHhCCCChhHHHHHHHHHHHhCChhHHHHH
Q 012143 18 LGKCRSRISSKMDSALEFGVDADGDQSGLGTSSSSREEKVSSLKTGLVHVARKMPKNAHAHFLLGLMYQRLGQPLKAVSS 97 (470)
Q Consensus 18 ~g~~~~a~~~~~~~~l~~~p~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~l~~~~~~~g~~~~A~~~ 97 (470)
++.+..|- +.++++|..+..+...|...+.. -++...+..|...+.+++..-|.--..|+....+--..|+...|.+.
T Consensus 86 q~e~~RAR-Sv~ERALdvd~r~itLWlkYae~-Emknk~vNhARNv~dRAvt~lPRVdqlWyKY~ymEE~LgNi~gaRqi 163 (677)
T KOG1915|consen 86 QKEIQRAR-SVFERALDVDYRNITLWLKYAEF-EMKNKQVNHARNVWDRAVTILPRVDQLWYKYIYMEEMLGNIAGARQI 163 (677)
T ss_pred HHHHHHHH-HHHHHHHhcccccchHHHHHHHH-HHhhhhHhHHHHHHHHHHHhcchHHHHHHHHHHHHHHhcccHHHHHH
Confidence 45566666 88999999999999999999999 99999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHhhhhcccchhhh-------HHHHHHhhhccccccccCCC--ccccccCcccHHHHHHHHHHhhhcCccc---
Q 012143 98 YEKAEEILLRCEADIARPEL-------LSLVQIHHAQCLLPESSGDN--SLDKELEPEELEEILSKLKESMQSDTRQ--- 165 (470)
Q Consensus 98 ~~~al~~~~~~~~~~~~~~~-------~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~A~~~~~~~~~~~p~~--- 165 (470)
|++-++..|+.......-.+ -..-.++.....+.-..... .+.-..+.|+..-|...|.+++..-.++
T Consensus 164 ferW~~w~P~eqaW~sfI~fElRykeieraR~IYerfV~~HP~v~~wikyarFE~k~g~~~~aR~VyerAie~~~~d~~~ 243 (677)
T KOG1915|consen 164 FERWMEWEPDEQAWLSFIKFELRYKEIERARSIYERFVLVHPKVSNWIKYARFEEKHGNVALARSVYERAIEFLGDDEEA 243 (677)
T ss_pred HHHHHcCCCcHHHHHHHHHHHHHhhHHHHHHHHHHHHheecccHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHhhhHHHH
Confidence 99999987765321110000 00000000000000000000 0001234566666777777666543332
Q ss_pred hHHHHHHHHHHHHcCChHHHHHHHHHHhhc--------------------------------------------CCCChH
Q 012143 166 AVVWNTLGLILLKSGRLQSSISVLSSLLAV--------------------------------------------DPNNCD 201 (470)
Q Consensus 166 ~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~--------------------------------------------~~~~~~ 201 (470)
...+...|..-..++.++.|...|+-++.. +|.+.+
T Consensus 244 e~lfvaFA~fEe~qkE~ERar~iykyAld~~pk~raeeL~k~~~~fEKqfGd~~gIEd~Iv~KRk~qYE~~v~~np~nYD 323 (677)
T KOG1915|consen 244 EILFVAFAEFEERQKEYERARFIYKYALDHIPKGRAEELYKKYTAFEKQFGDKEGIEDAIVGKRKFQYEKEVSKNPYNYD 323 (677)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCcccHHHHHHHHHHHHHHhcchhhhHHHHhhhhhhHHHHHHHhCCCCch
Confidence 122333344444445555555555544433 344555
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCChHH--HHHHHHHHHhhhcccccccccchhhhhH-HHhcCCHHHHHHHH
Q 012143 202 CIGNLGIAYFQSGDMEQSAKCFQDLILKDQNHPAA--LINYAALLLCKYGSVLAGAGANTGEGAC-LDQASAVNVAKECL 278 (470)
Q Consensus 202 ~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~--~~~l~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~A~~~~ 278 (470)
+|+..-.+-...|+.+.-.+.|++++..-|....- |.....+.. +.+.. -....+.+.+.++|
T Consensus 324 sWfdylrL~e~~g~~~~Ire~yErAIanvpp~~ekr~W~RYIYLWi--------------nYalyeEle~ed~ertr~vy 389 (677)
T KOG1915|consen 324 SWFDYLRLEESVGDKDRIRETYERAIANVPPASEKRYWRRYIYLWI--------------NYALYEELEAEDVERTRQVY 389 (677)
T ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHccCCchhHHHHHHHHHHHHH--------------HHHHHHHHHhhhHHHHHHHH
Confidence 66666666677777777777777777666543322 111111111 01100 12578899999999
Q ss_pred HHHHhcCCC----CHHHHHHHHHHHHHcCChhHHHHHHHHHHhcCCCcccHHHHHHHHHHHHhhhccCchHHhhhhHHHH
Q 012143 279 LAALKADPK----AAHIWANLANAYYLTGDHRSSGKCLEKAAKLEPNCMSTRYAVAVSRIKDAERSQEPTEQLSWAGNEM 354 (470)
Q Consensus 279 ~~~~~~~p~----~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~p~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~ 354 (470)
+.++++-|. .+.+|...|....++.+...|.+.+-.++-..|.+....-.+.+ .- -..-++.+
T Consensus 390 q~~l~lIPHkkFtFaKiWlmyA~feIRq~~l~~ARkiLG~AIG~cPK~KlFk~YIel---El----------qL~efDRc 456 (677)
T KOG1915|consen 390 QACLDLIPHKKFTFAKIWLMYAQFEIRQLNLTGARKILGNAIGKCPKDKLFKGYIEL---EL----------QLREFDRC 456 (677)
T ss_pred HHHHhhcCcccchHHHHHHHHHHHHHHHcccHHHHHHHHHHhccCCchhHHHHHHHH---HH----------HHhhHHHH
Confidence 999999887 57789999999999999999999999999999997543322211 10 01122333
Q ss_pred HHHhhcCCCCCCCcHHHHHHHHHHHhccccHHHHHHHHHHHhcch----hhhhHhhHHHHHHHhccHHHHHHHHHHHHhc
Q 012143 355 ASILREGDPVQIEPPIAWAGFAAVQKTHHEVAAAFETEENELSKM----EECAGAGESAFLDQASAVNVAKECLLAALKA 430 (470)
Q Consensus 355 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~----~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~ 430 (470)
......-....|.+-.+|...|.+-...|+.+.|...|..+++.. +...|-.....-...|.++.|...|++.|+.
T Consensus 457 RkLYEkfle~~Pe~c~~W~kyaElE~~LgdtdRaRaifelAi~qp~ldmpellwkaYIdFEi~~~E~ekaR~LYerlL~r 536 (677)
T KOG1915|consen 457 RKLYEKFLEFSPENCYAWSKYAELETSLGDTDRARAIFELAISQPALDMPELLWKAYIDFEIEEGEFEKARALYERLLDR 536 (677)
T ss_pred HHHHHHHHhcChHhhHHHHHHHHHHHHhhhHHHHHHHHHHHhcCcccccHHHHHHHhhhhhhhcchHHHHHHHHHHHHHh
Confidence 444444445567778899999999999999999999999988733 4444555555666889999999999999999
Q ss_pred CCCcHHHHHHHHHHHH-----HcC-----------ChHHHHHHHHHHHHhhccC
Q 012143 431 DPKAAHIWANLANAYY-----LTG-----------DHRSSGKCLEKVLMVYCSS 468 (470)
Q Consensus 431 ~p~~~~~~~~la~~~~-----~~g-----------~~~~A~~~~~~al~~~~~~ 468 (470)
.+... +|...|..-. ..| +...|...|++|...+..+
T Consensus 537 t~h~k-vWisFA~fe~s~~~~~~~~~~~~~e~~~~~~~~AR~iferAn~~~k~~ 589 (677)
T KOG1915|consen 537 TQHVK-VWISFAKFEASASEGQEDEDLAELEITDENIKRARKIFERANTYLKES 589 (677)
T ss_pred cccch-HHHhHHHHhccccccccccchhhhhcchhHHHHHHHHHHHHHHHHHhc
Confidence 87554 8888887655 445 6678999999998877554
|
|
| >cd05804 StaR_like StaR_like; a well-conserved protein found in bacteria, plants, and animals | Back alignment and domain information |
|---|
Probab=99.75 E-value=3.3e-15 Score=136.39 Aligned_cols=209 Identities=10% Similarity=0.001 Sum_probs=167.5
Q ss_pred CCCCcchhhhcccchhhhhcChhhHHHHHHHHHHhCCCC---hhHHHHHHHHHHHhCChhHHHHHHHHHHHHHhhhhccc
Q 012143 36 GVDADGDQSGLGTSSSSREEKVSSLKTGLVHVARKMPKN---AHAHFLLGLMYQRLGQPLKAVSSYEKAEEILLRCEADI 112 (470)
Q Consensus 36 ~p~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~p~~---~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~ 112 (470)
+|+.+.++..+|.. +...|+.+.+...+.++.+..|.+ .+..+..|.++...|++++|...++++++..|.+..
T Consensus 2 dp~~~~a~~~~a~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~a~~~~~~g~~~~A~~~~~~~l~~~P~~~~-- 78 (355)
T cd05804 2 DPDFALGHAAAALL-LLLGGERPAAAAKAAAAAQALAARATERERAHVEALSAWIAGDLPKALALLEQLLDDYPRDLL-- 78 (355)
T ss_pred CCccHHHHHHHHHH-HHhcCCcchHHHHHHHHHHHhccCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCcHH--
Confidence 79999999999988 888999999999999988888765 456788899999999999999999999998876531
Q ss_pred chhhhHHHHHHhhhccccccccCCCccccccCcccHHHHHHHHHHhhhcCccchHHHHHHHHHHHHcCChHHHHHHHHHH
Q 012143 113 ARPELLSLVQIHHAQCLLPESSGDNSLDKELEPEELEEILSKLKESMQSDTRQAVVWNTLGLILLKSGRLQSSISVLSSL 192 (470)
Q Consensus 113 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~a 192 (470)
.. .. +..+...|. ..+....+...+......+|....++..+|.++..+|++++|+..++++
T Consensus 79 ----a~------~~-~~~~~~~~~-------~~~~~~~~~~~l~~~~~~~~~~~~~~~~~a~~~~~~G~~~~A~~~~~~a 140 (355)
T cd05804 79 ----AL------KL-HLGAFGLGD-------FSGMRDHVARVLPLWAPENPDYWYLLGMLAFGLEEAGQYDRAEEAARRA 140 (355)
T ss_pred ----HH------HH-hHHHHHhcc-------cccCchhHHHHHhccCcCCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 11 10 111111111 1234456666666656677887888889999999999999999999999
Q ss_pred hhcCCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCChHH----HHHHHHHHHhhhcccccccccchhhhhHHHhc
Q 012143 193 LAVDPNNCDCIGNLGIAYFQSGDMEQSAKCFQDLILKDQNHPAA----LINYAALLLCKYGSVLAGAGANTGEGACLDQA 268 (470)
Q Consensus 193 ~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~----~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 268 (470)
++..|+++.++..+|.++...|++++|+..+++++...|.++.. +..++.++ ...
T Consensus 141 l~~~p~~~~~~~~la~i~~~~g~~~eA~~~l~~~l~~~~~~~~~~~~~~~~la~~~---------------------~~~ 199 (355)
T cd05804 141 LELNPDDAWAVHAVAHVLEMQGRFKEGIAFMESWRDTWDCSSMLRGHNWWHLALFY---------------------LER 199 (355)
T ss_pred HhhCCCCcHHHHHHHHHHHHcCCHHHHHHHHHhhhhccCCCcchhHHHHHHHHHHH---------------------HHC
Confidence 99999999999999999999999999999999999988754332 33444444 489
Q ss_pred CCHHHHHHHHHHHHhcCC
Q 012143 269 SAVNVAKECLLAALKADP 286 (470)
Q Consensus 269 ~~~~~A~~~~~~~~~~~p 286 (470)
|++++|+..|++++...|
T Consensus 200 G~~~~A~~~~~~~~~~~~ 217 (355)
T cd05804 200 GDYEAALAIYDTHIAPSA 217 (355)
T ss_pred CCHHHHHHHHHHHhcccc
Confidence 999999999999987766
|
A family member from Streptomyces toyocaensis, StaR is part of a gene cluster involved in the biosynthesis of glycopeptide antibiotics (GPAs), specifically A47934. It has been speculated that StaR could be a flavoprotein hydroxylating a tyrosine sidechain. Some family members have been annotated as proteins containing tetratricopeptide (TPR) repeats, which may at least indicate mostly alpha-helical secondary structure. |
| >PRK15359 type III secretion system chaperone protein SscB; Provisional | Back alignment and domain information |
|---|
Probab=99.74 E-value=9.5e-17 Score=124.02 Aligned_cols=127 Identities=16% Similarity=0.166 Sum_probs=109.8
Q ss_pred HHHHHHhhhcCccchHHHHHHHHHHHHcCChHHHHHHHHHHhhcCCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCC
Q 012143 152 LSKLKESMQSDTRQAVVWNTLGLILLKSGRLQSSISVLSSLLAVDPNNCDCIGNLGIAYFQSGDMEQSAKCFQDLILKDQ 231 (470)
Q Consensus 152 ~~~~~~~~~~~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p 231 (470)
...++++++.+|++ +..+|.++...|++++|+..|++++..+|.+..++..+|.++...|++++|+..|++++.++|
T Consensus 13 ~~~~~~al~~~p~~---~~~~g~~~~~~g~~~~A~~~~~~al~~~P~~~~a~~~lg~~~~~~g~~~~A~~~y~~Al~l~p 89 (144)
T PRK15359 13 EDILKQLLSVDPET---VYASGYASWQEGDYSRAVIDFSWLVMAQPWSWRAHIALAGTWMMLKEYTTAINFYGHALMLDA 89 (144)
T ss_pred HHHHHHHHHcCHHH---HHHHHHHHHHcCCHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCC
Confidence 45788888888875 557888899999999999999999999999999999999999999999999999999999999
Q ss_pred CChHHHHHHHHHHHhhhcccccccccchhhhhHHHhcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHc
Q 012143 232 NHPAALINYAALLLCKYGSVLAGAGANTGEGACLDQASAVNVAKECLLAALKADPKAAHIWANLANAYYLT 302 (470)
Q Consensus 232 ~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~la~~~~~~ 302 (470)
+++.+++.+|.++. ..|++++|+..|++++...|+++..+.+++.+....
T Consensus 90 ~~~~a~~~lg~~l~---------------------~~g~~~eAi~~~~~Al~~~p~~~~~~~~~~~~~~~l 139 (144)
T PRK15359 90 SHPEPVYQTGVCLK---------------------MMGEPGLAREAFQTAIKMSYADASWSEIRQNAQIMV 139 (144)
T ss_pred CCcHHHHHHHHHHH---------------------HcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHH
Confidence 99999988888887 688999999999999999999988888888776543
|
|
| >TIGR03302 OM_YfiO outer membrane assembly lipoprotein YfiO | Back alignment and domain information |
|---|
Probab=99.74 E-value=5.7e-16 Score=132.31 Aligned_cols=193 Identities=16% Similarity=0.105 Sum_probs=139.4
Q ss_pred CCCChhHHHHHHHHHHHhCChhHHHHHHHHHHHHHhhhhcccchhhhHHHHHHhhhccccccccCCCccccccCcccHHH
Q 012143 71 MPKNAHAHFLLGLMYQRLGQPLKAVSSYEKAEEILLRCEADIARPELLSLVQIHHAQCLLPESSGDNSLDKELEPEELEE 150 (470)
Q Consensus 71 ~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 150 (470)
++..+..++.+|..+...|++++|+..|++++...|.+
T Consensus 29 ~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~~~~~~p~~------------------------------------------ 66 (235)
T TIGR03302 29 EEWPAEELYEEAKEALDSGDYTEAIKYFEALESRYPFS------------------------------------------ 66 (235)
T ss_pred ccCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCc------------------------------------------
Confidence 45567788888888888888888888888877764431
Q ss_pred HHHHHHHhhhcCccchHHHHHHHHHHHHcCChHHHHHHHHHHhhcCCCChH---HHHHHHHHHHHc--------CCHHHH
Q 012143 151 ILSKLKESMQSDTRQAVVWNTLGLILLKSGRLQSSISVLSSLLAVDPNNCD---CIGNLGIAYFQS--------GDMEQS 219 (470)
Q Consensus 151 A~~~~~~~~~~~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~---~~~~la~~~~~~--------g~~~~A 219 (470)
|....+++.+|.++...|++++|+..|+++++..|+++. +++.+|.++... |++++|
T Consensus 67 ------------~~~~~a~~~la~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~a~~~~g~~~~~~~~~~~~~~~~~~~A 134 (235)
T TIGR03302 67 ------------PYAEQAQLDLAYAYYKSGDYAEAIAAADRFIRLHPNHPDADYAYYLRGLSNYNQIDRVDRDQTAAREA 134 (235)
T ss_pred ------------hhHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHCcCCCchHHHHHHHHHHHHHhcccccCCHHHHHHH
Confidence 122346677777777777777777777777777776655 577777777765 677888
Q ss_pred HHHHHHHHhhCCCChHHHHHHHHHHHhhhcccccccccchhhhhHHHhcCCHHHHHHHHHHHHhcCCC---CHHHHHHHH
Q 012143 220 AKCFQDLILKDQNHPAALINYAALLLCKYGSVLAGAGANTGEGACLDQASAVNVAKECLLAALKADPK---AAHIWANLA 296 (470)
Q Consensus 220 ~~~~~~~l~~~p~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~p~---~~~~~~~la 296 (470)
++.|++++..+|++...+..+..+..... ........+|.++...|++.+|+..+++++...|+ .+.++..+|
T Consensus 135 ~~~~~~~~~~~p~~~~~~~a~~~~~~~~~----~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~a~~~l~ 210 (235)
T TIGR03302 135 FEAFQELIRRYPNSEYAPDAKKRMDYLRN----RLAGKELYVARFYLKRGAYVAAINRFETVVENYPDTPATEEALARLV 210 (235)
T ss_pred HHHHHHHHHHCCCChhHHHHHHHHHHHHH----HHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHCCCCcchHHHHHHHH
Confidence 88888888888877655433322211000 00111234677788999999999999999999776 458999999
Q ss_pred HHHHHcCChhHHHHHHHHHHhcCCC
Q 012143 297 NAYYLTGDHRSSGKCLEKAAKLEPN 321 (470)
Q Consensus 297 ~~~~~~g~~~~A~~~~~~a~~~~p~ 321 (470)
.++...|++++|..+++......|+
T Consensus 211 ~~~~~lg~~~~A~~~~~~l~~~~~~ 235 (235)
T TIGR03302 211 EAYLKLGLKDLAQDAAAVLGANYPD 235 (235)
T ss_pred HHHHHcCCHHHHHHHHHHHHhhCCC
Confidence 9999999999999999888776653
|
Members of this protein family include YfiO, a near-essential protein of the outer membrane, part of a complex involved in protein insertion into the bacterial outer membrane. Many proteins in this family are annotated as ComL, based on the involvement of this protein in natural transformation with exogenous DNA in Neisseria gonorrhoeae. This protein family shows sequence similarity to, but is distinct from, the tol-pal system protein YbgF (TIGR02795). |
| >TIGR03302 OM_YfiO outer membrane assembly lipoprotein YfiO | Back alignment and domain information |
|---|
Probab=99.73 E-value=1.3e-15 Score=130.00 Aligned_cols=196 Identities=16% Similarity=0.102 Sum_probs=129.8
Q ss_pred ccchHHHHHHHHHHHHcCChHHHHHHHHHHhhcCCCCh---HHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCChH---H
Q 012143 163 TRQAVVWNTLGLILLKSGRLQSSISVLSSLLAVDPNNC---DCIGNLGIAYFQSGDMEQSAKCFQDLILKDQNHPA---A 236 (470)
Q Consensus 163 p~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~---~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~---~ 236 (470)
+..+..++.+|..+...|++++|+..|++++..+|+++ .+++.+|.++...|++++|+..|+++++..|+++. +
T Consensus 30 ~~~~~~~~~~g~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~a~~~la~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~a 109 (235)
T TIGR03302 30 EWPAEELYEEAKEALDSGDYTEAIKYFEALESRYPFSPYAEQAQLDLAYAYYKSGDYAEAIAAADRFIRLHPNHPDADYA 109 (235)
T ss_pred cCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCchhHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHCcCCCchHHH
Confidence 44456666666666666666666666666666666554 35566666666666666666666666666665554 3
Q ss_pred HHHHHHHHHhhhcccccccccchhhhhHHHhcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCChhHHHHHHHHHH
Q 012143 237 LINYAALLLCKYGSVLAGAGANTGEGACLDQASAVNVAKECLLAALKADPKAAHIWANLANAYYLTGDHRSSGKCLEKAA 316 (470)
Q Consensus 237 ~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~a~ 316 (470)
++.+|.++. .. ++.++...|++++|+..|++++
T Consensus 110 ~~~~g~~~~---------------------~~--------------------------~~~~~~~~~~~~~A~~~~~~~~ 142 (235)
T TIGR03302 110 YYLRGLSNY---------------------NQ--------------------------IDRVDRDQTAAREAFEAFQELI 142 (235)
T ss_pred HHHHHHHHH---------------------Hh--------------------------cccccCCHHHHHHHHHHHHHHH
Confidence 344443332 11 1112333478899999999999
Q ss_pred hcCCCcccHHHHHHHHHHHHhhhccCchHHhhhhHHHHHHHhhcCCCCCCCcHHHHHHHHHHHhccccHHHHHHHHHHHh
Q 012143 317 KLEPNCMSTRYAVAVSRIKDAERSQEPTEQLSWAGNEMASILREGDPVQIEPPIAWAGFAAVQKTHHEVAAAFETEENEL 396 (470)
Q Consensus 317 ~~~p~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~ 396 (470)
..+|++......+.. ++....
T Consensus 143 ~~~p~~~~~~~a~~~-------------------------------------------~~~~~~---------------- 163 (235)
T TIGR03302 143 RRYPNSEYAPDAKKR-------------------------------------------MDYLRN---------------- 163 (235)
T ss_pred HHCCCChhHHHHHHH-------------------------------------------HHHHHH----------------
Confidence 999987654322211 000000
Q ss_pred cchhhhhHhhHHHHHHHhccHHHHHHHHHHHHhcCCCc---HHHHHHHHHHHHHcCChHHHHHHHHHHHHhhc
Q 012143 397 SKMEECAGAGESAFLDQASAVNVAKECLLAALKADPKA---AHIWANLANAYYLTGDHRSSGKCLEKVLMVYC 466 (470)
Q Consensus 397 ~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~p~~---~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~ 466 (470)
........+|.++...|++.+|+..|++++...|+. +.+++.+|.++..+|++++|..+++.....+|
T Consensus 164 --~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~a~~~l~~~~~~lg~~~~A~~~~~~l~~~~~ 234 (235)
T TIGR03302 164 --RLAGKELYVARFYLKRGAYVAAINRFETVVENYPDTPATEEALARLVEAYLKLGLKDLAQDAAAVLGANYP 234 (235)
T ss_pred --HHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHCCCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCC
Confidence 001122456678899999999999999999997764 68999999999999999999999988877664
|
Members of this protein family include YfiO, a near-essential protein of the outer membrane, part of a complex involved in protein insertion into the bacterial outer membrane. Many proteins in this family are annotated as ComL, based on the involvement of this protein in natural transformation with exogenous DNA in Neisseria gonorrhoeae. This protein family shows sequence similarity to, but is distinct from, the tol-pal system protein YbgF (TIGR02795). |
| >KOG2376 consensus Signal recognition particle, subunit Srp72 [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=99.73 E-value=5e-14 Score=125.33 Aligned_cols=195 Identities=13% Similarity=0.125 Sum_probs=142.9
Q ss_pred hhhhhhhhhhhHHHHHHHHHHHHhcCCCCcchhhhcccchhhhhcChhhHHHHHHHHHHhCCC---ChhHHHHHHHHHHH
Q 012143 11 EGKKINKLGKCRSRISSKMDSALEFGVDADGDQSGLGTSSSSREEKVSSLKTGLVHVARKMPK---NAHAHFLLGLMYQR 87 (470)
Q Consensus 11 ~~~~~~~~g~~~~a~~~~~~~~l~~~p~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~p~---~~~~~~~l~~~~~~ 87 (470)
.-..+...|+++++. ....+.+...|++..+.+..-.+ +.+.++|++|....++ ++. +....+..+.|.++
T Consensus 18 ~ln~~~~~~e~e~a~-k~~~Kil~~~pdd~~a~~cKvVa-lIq~~ky~~ALk~ikk----~~~~~~~~~~~fEKAYc~Yr 91 (652)
T KOG2376|consen 18 DLNRHGKNGEYEEAV-KTANKILSIVPDDEDAIRCKVVA-LIQLDKYEDALKLIKK----NGALLVINSFFFEKAYCEYR 91 (652)
T ss_pred HHHHhccchHHHHHH-HHHHHHHhcCCCcHhhHhhhHhh-hhhhhHHHHHHHHHHh----cchhhhcchhhHHHHHHHHH
Confidence 344566789999999 99999999999999999888888 8899999988855543 442 11222688999999
Q ss_pred hCChhHHHHHHHHHHHHHhhhhcccchhhhHHHHHHhhhccccccccCCCccccccCcccHHHHHHHHHHhhhcC-----
Q 012143 88 LGQPLKAVSSYEKAEEILLRCEADIARPELLSLVQIHHAQCLLPESSGDNSLDKELEPEELEEILSKLKESMQSD----- 162 (470)
Q Consensus 88 ~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~----- 162 (470)
.++.++|+..++- ++. .+ +... ...+.+ .++.|+|++|+.+|+..++.+
T Consensus 92 lnk~Dealk~~~~-~~~--~~------~~ll------~L~AQv-----------lYrl~~ydealdiY~~L~kn~~dd~d 145 (652)
T KOG2376|consen 92 LNKLDEALKTLKG-LDR--LD------DKLL------ELRAQV-----------LYRLERYDEALDIYQHLAKNNSDDQD 145 (652)
T ss_pred cccHHHHHHHHhc-ccc--cc------hHHH------HHHHHH-----------HHHHhhHHHHHHHHHHHHhcCCchHH
Confidence 9999999998882 111 11 0010 011111 346677788888887764432
Q ss_pred -------------------------cc-chHHHHHHHHHHHHcCChHHHHHHHHHHhhcC--------CC-------ChH
Q 012143 163 -------------------------TR-QAVVWNTLGLILLKSGRLQSSISVLSSLLAVD--------PN-------NCD 201 (470)
Q Consensus 163 -------------------------p~-~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~--------~~-------~~~ 201 (470)
|. ..+.+++.+.++...|+|.+|++.+++++.+. .+ -..
T Consensus 146 ~~~r~nl~a~~a~l~~~~~q~v~~v~e~syel~yN~Ac~~i~~gky~qA~elL~kA~~~~~e~l~~~d~~eEeie~el~~ 225 (652)
T KOG2376|consen 146 EERRANLLAVAAALQVQLLQSVPEVPEDSYELLYNTACILIENGKYNQAIELLEKALRICREKLEDEDTNEEEIEEELNP 225 (652)
T ss_pred HHHHHHHHHHHHhhhHHHHHhccCCCcchHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHhhcccccchhhHHHHHHH
Confidence 22 35578899999999999999999999995431 11 124
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCChHHH
Q 012143 202 CIGNLGIAYFQSGDMEQSAKCFQDLILKDQNHPAAL 237 (470)
Q Consensus 202 ~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~ 237 (470)
+...++.++..+|+..+|...|...+..+|.+....
T Consensus 226 IrvQlayVlQ~~Gqt~ea~~iy~~~i~~~~~D~~~~ 261 (652)
T KOG2376|consen 226 IRVQLAYVLQLQGQTAEASSIYVDIIKRNPADEPSL 261 (652)
T ss_pred HHHHHHHHHHHhcchHHHHHHHHHHHHhcCCCchHH
Confidence 678999999999999999999999999998876543
|
|
| >PF12569 NARP1: NMDA receptor-regulated protein 1 ; InterPro: IPR021183 This group represents N-terminal acetyltransferase A (NatA) auxiliary subunit and represents a non-catalytic component of the NatA N-terminal acetyltransferase, which catalyzes acetylation of proteins beginning with Met-Ser, Met-Gly and Met-Ala | Back alignment and domain information |
|---|
Probab=99.72 E-value=1.3e-13 Score=127.25 Aligned_cols=423 Identities=13% Similarity=0.028 Sum_probs=263.8
Q ss_pred hhhhhhhhhhHHHHHHHHHHHHhcCCCCcchhhhcccchhhhhcChhhHHHHHHHHHHhCCCChhHHHHHHHHHHHhC--
Q 012143 12 GKKINKLGKCRSRISSKMDSALEFGVDADGDQSGLGTSSSSREEKVSSLKTGLVHVARKMPKNAHAHFLLGLMYQRLG-- 89 (470)
Q Consensus 12 ~~~~~~~g~~~~a~~~~~~~~l~~~p~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~l~~~~~~~g-- 89 (470)
...+.+.|++++|+ ..+.+.-..-+|.....-..|.+ +...|++++|...+...++.+|++...+..+..+.....
T Consensus 11 ~~il~e~g~~~~AL-~~L~~~~~~I~Dk~~~~E~rA~l-l~kLg~~~eA~~~y~~Li~rNPdn~~Yy~~L~~~~g~~~~~ 88 (517)
T PF12569_consen 11 NSILEEAGDYEEAL-EHLEKNEKQILDKLAVLEKRAEL-LLKLGRKEEAEKIYRELIDRNPDNYDYYRGLEEALGLQLQL 88 (517)
T ss_pred HHHHHHCCCHHHHH-HHHHhhhhhCCCHHHHHHHHHHH-HHHcCCHHHHHHHHHHHHHHCCCcHHHHHHHHHHHhhhccc
Confidence 45677899999999 99998888888888888899999 999999999999999999999999999999988884443
Q ss_pred ---ChhHHHHHHHHHHHHHhhhhcccc-------hhhhHHHHHHhhhcc------ccccccCCCccccccCcccHHHHHH
Q 012143 90 ---QPLKAVSSYEKAEEILLRCEADIA-------RPELLSLVQIHHAQC------LLPESSGDNSLDKELEPEELEEILS 153 (470)
Q Consensus 90 ---~~~~A~~~~~~al~~~~~~~~~~~-------~~~~~~~~~~~~~~~------~~~~~~~~~~~~~~~~~~~~~~A~~ 153 (470)
+.+.-..+|++.....|....... ...+...+..+.... .++..+.. .|.......-...
T Consensus 89 ~~~~~~~~~~~y~~l~~~yp~s~~~~rl~L~~~~g~~F~~~~~~yl~~~l~KgvPslF~~lk~----Ly~d~~K~~~i~~ 164 (517)
T PF12569_consen 89 SDEDVEKLLELYDELAEKYPRSDAPRRLPLDFLEGDEFKERLDEYLRPQLRKGVPSLFSNLKP----LYKDPEKAAIIES 164 (517)
T ss_pred ccccHHHHHHHHHHHHHhCccccchhHhhcccCCHHHHHHHHHHHHHHHHhcCCchHHHHHHH----HHcChhHHHHHHH
Confidence 456678888877777665432211 011111111111100 00000000 0111122222222
Q ss_pred HHHHhh---hc------------Cccc--hHHHHHHHHHHHHcCChHHHHHHHHHHhhcCCCChHHHHHHHHHHHHcCCH
Q 012143 154 KLKESM---QS------------DTRQ--AVVWNTLGLILLKSGRLQSSISVLSSLLAVDPNNCDCIGNLGIAYFQSGDM 216 (470)
Q Consensus 154 ~~~~~~---~~------------~p~~--~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~la~~~~~~g~~ 216 (470)
++.... +. .|.. ..+++.++..|-..|++++|+.+++++|+..|..++.+...|.++-..|++
T Consensus 165 l~~~~~~~l~~~~~~~~~~~~~~~~p~~~lw~~~~lAqhyd~~g~~~~Al~~Id~aI~htPt~~ely~~KarilKh~G~~ 244 (517)
T PF12569_consen 165 LVEEYVNSLESNGSFSNGDDEEKEPPSTLLWTLYFLAQHYDYLGDYEKALEYIDKAIEHTPTLVELYMTKARILKHAGDL 244 (517)
T ss_pred HHHHHHHhhcccCCCCCccccccCCchHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHCCCH
Confidence 222221 11 1111 246688999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHhhCCCChHHHHHHHHHHHhhhcccccccccchhhhhHHHhcCCHHHHHHHHHHHHhcCC--C-------
Q 012143 217 EQSAKCFQDLILKDQNHPAALINYAALLLCKYGSVLAGAGANTGEGACLDQASAVNVAKECLLAALKADP--K------- 287 (470)
Q Consensus 217 ~~A~~~~~~~l~~~p~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~p--~------- 287 (470)
.+|.+.++.+..+++.+...-...+..++ +.|+.++|.+.+..-...+. .
T Consensus 245 ~~Aa~~~~~Ar~LD~~DRyiNsK~aKy~L---------------------Ra~~~e~A~~~~~~Ftr~~~~~~~~L~~mQ 303 (517)
T PF12569_consen 245 KEAAEAMDEARELDLADRYINSKCAKYLL---------------------RAGRIEEAEKTASLFTREDVDPLSNLNDMQ 303 (517)
T ss_pred HHHHHHHHHHHhCChhhHHHHHHHHHHHH---------------------HCCCHHHHHHHHHhhcCCCCCcccCHHHHH
Confidence 99999999999999988776666665555 79999999998887765542 1
Q ss_pred CHHHHHHHHHHHHHcCChhHHHHHHHHHHhcCCCcc----cHHH-H------HHHHHHHHhhhccCchHHhhhhHHHHHH
Q 012143 288 AAHIWANLANAYYLTGDHRSSGKCLEKAAKLEPNCM----STRY-A------VAVSRIKDAERSQEPTEQLSWAGNEMAS 356 (470)
Q Consensus 288 ~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~p~~~----~~~~-~------l~~~~~~~~~~~~~~~~~~~~~~~~~~~ 356 (470)
........|.+|.+.|++..|+..|..+.+...+.. +.+. . .+...+.+..........+..+...+..
T Consensus 304 c~Wf~~e~a~a~~r~~~~~~ALk~~~~v~k~f~~~~~DQfDFH~Yc~RK~t~r~Y~~~L~~ed~l~~~~~y~raa~~ai~ 383 (517)
T PF12569_consen 304 CMWFETECAEAYLRQGDYGLALKRFHAVLKHFDDFEEDQFDFHSYCLRKMTLRAYVDMLRWEDKLRSHPFYRRAAKGAIR 383 (517)
T ss_pred HHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHhcccccHHHHHHhhccHHHHHHHHHHHHHhhcCHHHHHHHHHHHH
Confidence 123345669999999999999999998887543221 1111 0 0111111222222222223322222222
Q ss_pred H----hhcCCCCCC----------CcHHHHHHHHHHH--hccccHHHHHHHHHHHh----------c--chhhhhHhhHH
Q 012143 357 I----LREGDPVQI----------EPPIAWAGFAAVQ--KTHHEVAAAFETEENEL----------S--KMEECAGAGES 408 (470)
Q Consensus 357 ~----~~~~~~~~~----------~~~~~~~~l~~~~--~~~~~~~~A~~~~~~~~----------~--~~~~~~~~~l~ 408 (470)
. ......... .....--..-..- ....+-+++...-.+.. . .....----.|
T Consensus 384 iYl~l~d~~~~~~~~~~~~~~~~~~~~e~Kk~~kK~kK~~~k~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~Dp~G 463 (517)
T PF12569_consen 384 IYLELHDKPEAKQGEEQEADNENMSAAERKKAKKKAKKAAKKAKKEEAEKAAKKEPKKQQNKSKKKEKVEPKKKDDDPLG 463 (517)
T ss_pred HHHHHhcCcccccccccccccccCChHHHHHHHHHHHHHHHHHhHHHHHHHHhhhhhhhhccccccccccCCcCCCCccH
Confidence 2 111110000 0000000000000 00011111111000000 0 00000011234
Q ss_pred HHHHHhcc-HHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHcCChHHHHHHHHHH
Q 012143 409 AFLDQASA-VNVAKECLLAALKADPKAAHIWANLANAYYLTGDHRSSGKCLEKV 461 (470)
Q Consensus 409 ~~~~~~~~-~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~a 461 (470)
.-+....+ .++|.++++..++..|++.+.|..--.+|.+.|++--|+..+.+|
T Consensus 464 ekL~~t~dPLe~A~kfl~pL~~~a~~~~et~~laFeVy~Rk~K~LLaLqaL~kA 517 (517)
T PF12569_consen 464 EKLLKTEDPLEEAMKFLKPLLELAPDNIETHLLAFEVYLRKGKYLLALQALKKA 517 (517)
T ss_pred HHHhcCCcHHHHHHHHHHHHHHhCccchhhHHHHhHHHHhcCcHHHHHHHHHhC
Confidence 44555543 789999999999999999999999999999999999999988765
|
N-terminal acetylation plays a role in normal eukaryotic translation and processing, protect against proteolytic degradation and protein turnover. NAT1 anchors ARD1 and NAT5 to the ribosome and may present the N- terminal of nascent polypeptides for acetylation [], []. |
| >PRK15359 type III secretion system chaperone protein SscB; Provisional | Back alignment and domain information |
|---|
Probab=99.71 E-value=5.1e-16 Score=119.95 Aligned_cols=122 Identities=20% Similarity=0.151 Sum_probs=114.7
Q ss_pred HHHHHHHhhcCCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCChHHHHHHHHHHHhhhcccccccccchhhhhHH
Q 012143 186 ISVLSSLLAVDPNNCDCIGNLGIAYFQSGDMEQSAKCFQDLILKDQNHPAALINYAALLLCKYGSVLAGAGANTGEGACL 265 (470)
Q Consensus 186 ~~~~~~a~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~ 265 (470)
...|+++++++|++ +..+|.++...|++++|+..|++++..+|.+..++..+|.++.
T Consensus 13 ~~~~~~al~~~p~~---~~~~g~~~~~~g~~~~A~~~~~~al~~~P~~~~a~~~lg~~~~-------------------- 69 (144)
T PRK15359 13 EDILKQLLSVDPET---VYASGYASWQEGDYSRAVIDFSWLVMAQPWSWRAHIALAGTWM-------------------- 69 (144)
T ss_pred HHHHHHHHHcCHHH---HHHHHHHHHHcCCHHHHHHHHHHHHHcCCCcHHHHHHHHHHHH--------------------
Confidence 56799999999885 6678999999999999999999999999999999999999888
Q ss_pred HhcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCChhHHHHHHHHHHhcCCCcccHHHHHHH
Q 012143 266 DQASAVNVAKECLLAALKADPKAAHIWANLANAYYLTGDHRSSGKCLEKAAKLEPNCMSTRYAVAV 331 (470)
Q Consensus 266 ~~~~~~~~A~~~~~~~~~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~p~~~~~~~~l~~ 331 (470)
..|++++|+..|++++..+|+++.+++++|.++...|++++|+..|++++...|+++..+...+.
T Consensus 70 -~~g~~~~A~~~y~~Al~l~p~~~~a~~~lg~~l~~~g~~~eAi~~~~~Al~~~p~~~~~~~~~~~ 134 (144)
T PRK15359 70 -MLKEYTTAINFYGHALMLDASHPEPVYQTGVCLKMMGEPGLAREAFQTAIKMSYADASWSEIRQN 134 (144)
T ss_pred -HHhhHHHHHHHHHHHHhcCCCCcHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHHHHHH
Confidence 79999999999999999999999999999999999999999999999999999999988876655
|
|
| >KOG3785 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=99.69 E-value=2.3e-13 Score=113.73 Aligned_cols=277 Identities=15% Similarity=0.055 Sum_probs=169.7
Q ss_pred hhhhhhhHHHHHHHHHHHHhcCCCCc-chhhhcccchhhhhcChhhHHHHHHHHHHhCCCChhHHHHHHHHHHHhCChhH
Q 012143 15 INKLGKCRSRISSKMDSALEFGVDAD-GDQSGLGTSSSSREEKVSSLKTGLVHVARKMPKNAHAHFLLGLMYQRLGQPLK 93 (470)
Q Consensus 15 ~~~~g~~~~a~~~~~~~~l~~~p~~~-~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~l~~~~~~~g~~~~ 93 (470)
+....++..|+ +.++-.+..+.... .....+|.+ +...|++++|...|+-+...+..+.+.+..|+.+++-.|.|.+
T Consensus 32 fls~rDytGAi-slLefk~~~~~EEE~~~~lWia~C-~fhLgdY~~Al~~Y~~~~~~~~~~~el~vnLAcc~FyLg~Y~e 109 (557)
T KOG3785|consen 32 FLSNRDYTGAI-SLLEFKLNLDREEEDSLQLWIAHC-YFHLGDYEEALNVYTFLMNKDDAPAELGVNLACCKFYLGQYIE 109 (557)
T ss_pred HHhcccchhHH-HHHHHhhccchhhhHHHHHHHHHH-HHhhccHHHHHHHHHHHhccCCCCcccchhHHHHHHHHHHHHH
Confidence 33456778888 77777776554433 445567888 9999999999999999888777778899999999999999999
Q ss_pred HHHHHHHHHHHHhhhhcccchhhhHHHHHHhhhccccccccCCCccccccCcccHHHHHHHHHHhhhcCccchHHHHHHH
Q 012143 94 AVSSYEKAEEILLRCEADIARPELLSLVQIHHAQCLLPESSGDNSLDKELEPEELEEILSKLKESMQSDTRQAVVWNTLG 173 (470)
Q Consensus 94 A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~l~ 173 (470)
|...-.++-+. |-. .+....++. +.++ ++-+-.|...++.. .+-...++
T Consensus 110 A~~~~~ka~k~----------pL~---~RLlfhlah--------------klnd-Ek~~~~fh~~LqD~---~EdqLSLA 158 (557)
T KOG3785|consen 110 AKSIAEKAPKT----------PLC---IRLLFHLAH--------------KLND-EKRILTFHSSLQDT---LEDQLSLA 158 (557)
T ss_pred HHHHHhhCCCC----------hHH---HHHHHHHHH--------------HhCc-HHHHHHHHHHHhhh---HHHHHhHH
Confidence 98887775431 111 111122211 2222 33344444444322 23445667
Q ss_pred HHHHHcCChHHHHHHHHHHhhcCCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCChHHHHHHHHHHHhhhccccc
Q 012143 174 LILLKSGRLQSSISVLSSLLAVDPNNCDCIGNLGIAYFQSGDMEQSAKCFQDLILKDQNHPAALINYAALLLCKYGSVLA 253 (470)
Q Consensus 174 ~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~l~~~~~~~~~~~~~ 253 (470)
.++...-.|++|++.|++++.-+|+....-..++.||.++.-++-+.+.+.-.++..|+.+.+....+..++.......+
T Consensus 159 svhYmR~HYQeAIdvYkrvL~dn~ey~alNVy~ALCyyKlDYydvsqevl~vYL~q~pdStiA~NLkacn~fRl~ngr~a 238 (557)
T KOG3785|consen 159 SVHYMRMHYQEAIDVYKRVLQDNPEYIALNVYMALCYYKLDYYDVSQEVLKVYLRQFPDSTIAKNLKACNLFRLINGRTA 238 (557)
T ss_pred HHHHHHHHHHHHHHHHHHHHhcChhhhhhHHHHHHHHHhcchhhhHHHHHHHHHHhCCCcHHHHHHHHHHHhhhhccchh
Confidence 77777777888888888888777777777777888888888888888888877887887777766655555432111000
Q ss_pred c---------cccchhhhhHHHhc-----CCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCChhHHHHHHHHHHhcC
Q 012143 254 G---------AGANTGEGACLDQA-----SAVNVAKECLLAALKADPKAAHIWANLANAYYLTGDHRSSGKCLEKAAKLE 319 (470)
Q Consensus 254 ~---------~~~~~~~~~~~~~~-----~~~~~A~~~~~~~~~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~ 319 (470)
. ....+..+....+. .+-+.|++++-..++. -|++..++...|.++++.++|+...+ .++
T Consensus 239 e~E~k~ladN~~~~~~f~~~l~rHNLVvFrngEgALqVLP~L~~~---IPEARlNL~iYyL~q~dVqeA~~L~K---dl~ 312 (557)
T KOG3785|consen 239 EDEKKELADNIDQEYPFIEYLCRHNLVVFRNGEGALQVLPSLMKH---IPEARLNLIIYYLNQNDVQEAISLCK---DLD 312 (557)
T ss_pred HHHHHHHHhcccccchhHHHHHHcCeEEEeCCccHHHhchHHHhh---ChHhhhhheeeecccccHHHHHHHHh---hcC
Confidence 0 00000001000000 0112233322222222 35677778878888888888876664 456
Q ss_pred CCcccHHHHHH
Q 012143 320 PNCMSTRYAVA 330 (470)
Q Consensus 320 p~~~~~~~~l~ 330 (470)
|..+..+...+
T Consensus 313 PttP~EyilKg 323 (557)
T KOG3785|consen 313 PTTPYEYILKG 323 (557)
T ss_pred CCChHHHHHHH
Confidence 77666555443
|
|
| >PRK10370 formate-dependent nitrite reductase complex subunit NrfG; Provisional | Back alignment and domain information |
|---|
Probab=99.69 E-value=2e-15 Score=123.02 Aligned_cols=153 Identities=14% Similarity=0.193 Sum_probs=129.6
Q ss_pred ccCcccHHHHHHHHHHhhhcCccchHHHHHHHHHHHHcCChHHHHHHHHHHhhcCCCChHHHHHHHHHHHHcCCHHHHHH
Q 012143 142 ELEPEELEEILSKLKESMQSDTRQAVVWNTLGLILLKSGRLQSSISVLSSLLAVDPNNCDCIGNLGIAYFQSGDMEQSAK 221 (470)
Q Consensus 142 ~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~la~~~~~~g~~~~A~~ 221 (470)
|+..|+++......++.. +|.. -+...++.++++..++++++.+|+++..|..+|.+|...|++++|+.
T Consensus 26 Y~~~g~~~~v~~~~~~~~--~~~~---------~~~~~~~~~~~i~~l~~~L~~~P~~~~~w~~Lg~~~~~~g~~~~A~~ 94 (198)
T PRK10370 26 YLLSPKWQAVRAEYQRLA--DPLH---------QFASQQTPEAQLQALQDKIRANPQNSEQWALLGEYYLWRNDYDNALL 94 (198)
T ss_pred HHHcchHHHHHHHHHHHh--Cccc---------cccCchhHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHCCCHHHHHH
Confidence 556677777554443222 1211 11136788999999999999999999999999999999999999999
Q ss_pred HHHHHHhhCCCChHHHHHHHHHHHhhhcccccccccchhhhhHHHhcCC--HHHHHHHHHHHHhcCCCCHHHHHHHHHHH
Q 012143 222 CFQDLILKDQNHPAALINYAALLLCKYGSVLAGAGANTGEGACLDQASA--VNVAKECLLAALKADPKAAHIWANLANAY 299 (470)
Q Consensus 222 ~~~~~l~~~p~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~A~~~~~~~~~~~p~~~~~~~~la~~~ 299 (470)
.|+++++++|+++..+..++.++.. ..|+ +++|...++++++.+|+++.++..+|..+
T Consensus 95 a~~~Al~l~P~~~~~~~~lA~aL~~--------------------~~g~~~~~~A~~~l~~al~~dP~~~~al~~LA~~~ 154 (198)
T PRK10370 95 AYRQALQLRGENAELYAALATVLYY--------------------QAGQHMTPQTREMIDKALALDANEVTALMLLASDA 154 (198)
T ss_pred HHHHHHHhCCCCHHHHHHHHHHHHH--------------------hcCCCCcHHHHHHHHHHHHhCCCChhHHHHHHHHH
Confidence 9999999999999999999987542 4666 59999999999999999999999999999
Q ss_pred HHcCChhHHHHHHHHHHhcCCCcccH
Q 012143 300 YLTGDHRSSGKCLEKAAKLEPNCMST 325 (470)
Q Consensus 300 ~~~g~~~~A~~~~~~a~~~~p~~~~~ 325 (470)
...|++++|+.+++++++..|.+..-
T Consensus 155 ~~~g~~~~Ai~~~~~aL~l~~~~~~r 180 (198)
T PRK10370 155 FMQADYAQAIELWQKVLDLNSPRVNR 180 (198)
T ss_pred HHcCCHHHHHHHHHHHHhhCCCCccH
Confidence 99999999999999999999886643
|
|
| >PRK10370 formate-dependent nitrite reductase complex subunit NrfG; Provisional | Back alignment and domain information |
|---|
Probab=99.69 E-value=5.8e-15 Score=120.39 Aligned_cols=127 Identities=17% Similarity=0.239 Sum_probs=117.8
Q ss_pred CcccHHHHHHHHHHhhhcCccchHHHHHHHHHHHHcCChHHHHHHHHHHhhcCCCChHHHHHHHHHH-HHcCC--HHHHH
Q 012143 144 EPEELEEILSKLKESMQSDTRQAVVWNTLGLILLKSGRLQSSISVLSSLLAVDPNNCDCIGNLGIAY-FQSGD--MEQSA 220 (470)
Q Consensus 144 ~~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~la~~~-~~~g~--~~~A~ 220 (470)
..++.++++..+++++..+|+++..|..+|.++...|++++|+..|+++++++|+++.++..+|.++ ...|+ +++|.
T Consensus 51 ~~~~~~~~i~~l~~~L~~~P~~~~~w~~Lg~~~~~~g~~~~A~~a~~~Al~l~P~~~~~~~~lA~aL~~~~g~~~~~~A~ 130 (198)
T PRK10370 51 SQQTPEAQLQALQDKIRANPQNSEQWALLGEYYLWRNDYDNALLAYRQALQLRGENAELYAALATVLYYQAGQHMTPQTR 130 (198)
T ss_pred CchhHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcCCCCcHHHH
Confidence 3466799999999999999999999999999999999999999999999999999999999999975 67787 59999
Q ss_pred HHHHHHHhhCCCChHHHHHHHHHHHhhhcccccccccchhhhhHHHhcCCHHHHHHHHHHHHhcCCCCHHH
Q 012143 221 KCFQDLILKDQNHPAALINYAALLLCKYGSVLAGAGANTGEGACLDQASAVNVAKECLLAALKADPKAAHI 291 (470)
Q Consensus 221 ~~~~~~l~~~p~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~ 291 (470)
..++++++.+|+++.++..+|..+. +.|++++|+.+++++++..|.+..-
T Consensus 131 ~~l~~al~~dP~~~~al~~LA~~~~---------------------~~g~~~~Ai~~~~~aL~l~~~~~~r 180 (198)
T PRK10370 131 EMIDKALALDANEVTALMLLASDAF---------------------MQADYAQAIELWQKVLDLNSPRVNR 180 (198)
T ss_pred HHHHHHHHhCCCChhHHHHHHHHHH---------------------HcCCHHHHHHHHHHHHhhCCCCccH
Confidence 9999999999999999999998887 7999999999999999998875543
|
|
| >PRK14720 transcript cleavage factor/unknown domain fusion protein; Provisional | Back alignment and domain information |
|---|
Probab=99.69 E-value=1.5e-14 Score=139.45 Aligned_cols=154 Identities=12% Similarity=0.105 Sum_probs=105.8
Q ss_pred HhcCCCCcchhhhcccchhhhhcChhhHHHHHHHHHHhCCCChhHHHHHHHHHHHhCChhHHHHHHHHHHHHHhhhhccc
Q 012143 33 LEFGVDADGDQSGLGTSSSSREEKVSSLKTGLVHVARKMPKNAHAHFLLGLMYQRLGQPLKAVSSYEKAEEILLRCEADI 112 (470)
Q Consensus 33 l~~~p~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~ 112 (470)
...+|++..+|..+... +...+++++|...++..++.+|+...+++.+|.++.+.+++.++... .++...+.
T Consensus 24 ~~~~p~n~~a~~~Li~~-~~~~~~~deai~i~~~~l~~~P~~i~~yy~~G~l~~q~~~~~~~~lv--~~l~~~~~----- 95 (906)
T PRK14720 24 NNYSLSKFKELDDLIDA-YKSENLTDEAKDICEEHLKEHKKSISALYISGILSLSRRPLNDSNLL--NLIDSFSQ----- 95 (906)
T ss_pred ccCCcchHHHHHHHHHH-HHhcCCHHHHHHHHHHHHHhCCcceehHHHHHHHHHhhcchhhhhhh--hhhhhccc-----
Confidence 35577888888888888 88888999999999988888999999999999988888887777666 55544221
Q ss_pred chhhhHHHHHHhhhccccccccCCCccccccCcccHHHHHHHHHHhhhcCccchHHHHHHHHHHHHcCChHHHHHHHHHH
Q 012143 113 ARPELLSLVQIHHAQCLLPESSGDNSLDKELEPEELEEILSKLKESMQSDTRQAVVWNTLGLILLKSGRLQSSISVLSSL 192 (470)
Q Consensus 113 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~a 192 (470)
..++ .++..+...+...+++..+++.+|.||-++|++++|...|+++
T Consensus 96 --------------------------------~~~~-~~ve~~~~~i~~~~~~k~Al~~LA~~Ydk~g~~~ka~~~yer~ 142 (906)
T PRK14720 96 --------------------------------NLKW-AIVEHICDKILLYGENKLALRTLAEAYAKLNENKKLKGVWERL 142 (906)
T ss_pred --------------------------------ccch-hHHHHHHHHHHhhhhhhHHHHHHHHHHHHcCChHHHHHHHHHH
Confidence 1222 4444444444445566666666666666666666666666666
Q ss_pred hhcCCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHh
Q 012143 193 LAVDPNNCDCIGNLGIAYFQSGDMEQSAKCFQDLIL 228 (470)
Q Consensus 193 ~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~ 228 (470)
++.+|+++.++.++|..|... +.++|++++.+++.
T Consensus 143 L~~D~~n~~aLNn~AY~~ae~-dL~KA~~m~~KAV~ 177 (906)
T PRK14720 143 VKADRDNPEIVKKLATSYEEE-DKEKAITYLKKAIY 177 (906)
T ss_pred HhcCcccHHHHHHHHHHHHHh-hHHHHHHHHHHHHH
Confidence 666666666666666666666 66666666666554
|
|
| >KOG3785 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=99.68 E-value=2.2e-14 Score=119.71 Aligned_cols=316 Identities=12% Similarity=0.042 Sum_probs=207.4
Q ss_pred ccCcccHHHHHHHHHHhhhcCccch-HHHHHHHHHHHHcCChHHHHHHHHHHhhcCCCChHHHHHHHHHHHHcCCHHHHH
Q 012143 142 ELEPEELEEILSKLKESMQSDTRQA-VVWNTLGLILLKSGRLQSSISVLSSLLAVDPNNCDCIGNLGIAYFQSGDMEQSA 220 (470)
Q Consensus 142 ~~~~~~~~~A~~~~~~~~~~~p~~~-~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~la~~~~~~g~~~~A~ 220 (470)
.+...+|..|+..++-....+.... .....+|.|++..|+|++|+..|.-+...+..+...+.+++.+++-+|.|.+|.
T Consensus 32 fls~rDytGAislLefk~~~~~EEE~~~~lWia~C~fhLgdY~~Al~~Y~~~~~~~~~~~el~vnLAcc~FyLg~Y~eA~ 111 (557)
T KOG3785|consen 32 FLSNRDYTGAISLLEFKLNLDREEEDSLQLWIAHCYFHLGDYEEALNVYTFLMNKDDAPAELGVNLACCKFYLGQYIEAK 111 (557)
T ss_pred HHhcccchhHHHHHHHhhccchhhhHHHHHHHHHHHHhhccHHHHHHHHHHHhccCCCCcccchhHHHHHHHHHHHHHHH
Confidence 4567889999999998876655443 566779999999999999999999998877777889999999999999999998
Q ss_pred HHHHHHHhhCCCChHHHHHHHHHHHhh------hcccccccccchhhhhHHHhcCCHHHHHHHHHHHHhcCCCCHHHHHH
Q 012143 221 KCFQDLILKDQNHPAALINYAALLLCK------YGSVLAGAGANTGEGACLDQASAVNVAKECLLAALKADPKAAHIWAN 294 (470)
Q Consensus 221 ~~~~~~l~~~p~~~~~~~~l~~~~~~~------~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~ 294 (470)
..-.++-+ .|-....++.++.-+-.. ........+..++++.+....-.|.+|+++|.+++..+|+....-..
T Consensus 112 ~~~~ka~k-~pL~~RLlfhlahklndEk~~~~fh~~LqD~~EdqLSLAsvhYmR~HYQeAIdvYkrvL~dn~ey~alNVy 190 (557)
T KOG3785|consen 112 SIAEKAPK-TPLCIRLLFHLAHKLNDEKRILTFHSSLQDTLEDQLSLASVHYMRMHYQEAIDVYKRVLQDNPEYIALNVY 190 (557)
T ss_pred HHHhhCCC-ChHHHHHHHHHHHHhCcHHHHHHHHHHHhhhHHHHHhHHHHHHHHHHHHHHHHHHHHHHhcChhhhhhHHH
Confidence 88776532 111111222222111100 00011123556677888888889999999999999999999999999
Q ss_pred HHHHHHHcCChhHHHHHHHHHHhcCCCcccHHHHHHHHHHHHhhhccCchHHhhh-------hHHHHH------------
Q 012143 295 LANAYYLTGDHRSSGKCLEKAAKLEPNCMSTRYAVAVSRIKDAERSQEPTEQLSW-------AGNEMA------------ 355 (470)
Q Consensus 295 la~~~~~~g~~~~A~~~~~~a~~~~p~~~~~~~~l~~~~~~~~~~~~~~~~~~~~-------~~~~~~------------ 355 (470)
++.||+++.-++-+.+.++-.++..|+++.+....+...+.-. ....+...... .+....
T Consensus 191 ~ALCyyKlDYydvsqevl~vYL~q~pdStiA~NLkacn~fRl~-ngr~ae~E~k~ladN~~~~~~f~~~l~rHNLVvFrn 269 (557)
T KOG3785|consen 191 MALCYYKLDYYDVSQEVLKVYLRQFPDSTIAKNLKACNLFRLI-NGRTAEDEKKELADNIDQEYPFIEYLCRHNLVVFRN 269 (557)
T ss_pred HHHHHHhcchhhhHHHHHHHHHHhCCCcHHHHHHHHHHHhhhh-ccchhHHHHHHHHhcccccchhHHHHHHcCeEEEeC
Confidence 9999999999999999999999999998877665544322211 00000000000 000010
Q ss_pred --HHhhcCCCCCCCcHHHHHHHHHHHhccccHHHHHHHHHHHhcchhhhhHhhHHHHHHH--------------------
Q 012143 356 --SILREGDPVQIEPPIAWAGFAAVQKTHHEVAAAFETEENELSKMEECAGAGESAFLDQ-------------------- 413 (470)
Q Consensus 356 --~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~l~~~~~~-------------------- 413 (470)
..+.-..+.....|++..++...|..+++..+|+...+. ++|..+.-+.-.|.++..
T Consensus 270 gEgALqVLP~L~~~IPEARlNL~iYyL~q~dVqeA~~L~Kd-l~PttP~EyilKgvv~aalGQe~gSreHlKiAqqffql 348 (557)
T KOG3785|consen 270 GEGALQVLPSLMKHIPEARLNLIIYYLNQNDVQEAISLCKD-LDPTTPYEYILKGVVFAALGQETGSREHLKIAQQFFQL 348 (557)
T ss_pred CccHHHhchHHHhhChHhhhhheeeecccccHHHHHHHHhh-cCCCChHHHHHHHHHHHHhhhhcCcHHHHHHHHHHHHH
Confidence 111111111123466777888888888888888876543 333333333333333333
Q ss_pred -----------------------hccHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHcCChHHHHHHHHH
Q 012143 414 -----------------------ASAVNVAKECLLAALKADPKAAHIWANLANAYYLTGDHRSSGKCLEK 460 (470)
Q Consensus 414 -----------------------~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~ 460 (470)
..++++.+.++...-...-++....+++|..+...|++.+|.+.|-+
T Consensus 349 VG~Sa~ecDTIpGRQsmAs~fFL~~qFddVl~YlnSi~sYF~NdD~Fn~N~AQAk~atgny~eaEelf~~ 418 (557)
T KOG3785|consen 349 VGESALECDTIPGRQSMASYFFLSFQFDDVLTYLNSIESYFTNDDDFNLNLAQAKLATGNYVEAEELFIR 418 (557)
T ss_pred hcccccccccccchHHHHHHHHHHHHHHHHHHHHHHHHHHhcCcchhhhHHHHHHHHhcChHHHHHHHhh
Confidence 33355555555555455555666677777777777887777777644
|
|
| >KOG1130 consensus Predicted G-alpha GTPase interaction protein, contains GoLoco domain [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=99.64 E-value=2.6e-15 Score=127.65 Aligned_cols=281 Identities=15% Similarity=0.117 Sum_probs=210.6
Q ss_pred hhhhhhhhhhhhHHHHHHHHHHHHhcCCCCcc----hhhhcccchhhhhcChhhHHHHHHHHH------HhCCCChhHHH
Q 012143 10 VEGKKINKLGKCRSRISSKMDSALEFGVDADG----DQSGLGTSSSSREEKVSSLKTGLVHVA------RKMPKNAHAHF 79 (470)
Q Consensus 10 ~~~~~~~~~g~~~~a~~~~~~~~l~~~p~~~~----~~~~~~~~~~~~~~~~~~A~~~~~~~l------~~~p~~~~~~~ 79 (470)
-||..+.+.|+++.-+ +.|+.+++...++.. .|..+|.. +...++|++|.++-..-+ .-.-..+.+--
T Consensus 22 lEGERLck~gdcraGv-~ff~aA~qvGTeDl~tLSAIYsQLGNA-yfyL~DY~kAl~yH~hDltlar~lgdklGEAKssg 99 (639)
T KOG1130|consen 22 LEGERLCKMGDCRAGV-DFFKAALQVGTEDLSTLSAIYSQLGNA-YFYLKDYEKALKYHTHDLTLARLLGDKLGEAKSSG 99 (639)
T ss_pred HHHHHHHhccchhhhH-HHHHHHHHhcchHHHHHHHHHHHhcch-hhhHhhHHHHHhhhhhhHHHHHHhcchhccccccc
Confidence 3899999999999999 999999999888755 57789999 999999999998654322 22223345667
Q ss_pred HHHHHHHHhCChhHHHHHHHHHHHHHhhhhcccchhhhHHHHHHhhhccccccccCCCccccc---------cCcccHHH
Q 012143 80 LLGLMYQRLGQPLKAVSSYEKAEEILLRCEADIARPELLSLVQIHHAQCLLPESSGDNSLDKE---------LEPEELEE 150 (470)
Q Consensus 80 ~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---------~~~~~~~~ 150 (470)
+||..+.-.|.|++|+.+..+-+.+... ..+-....+++++++.+|...|+...-.. -....++.
T Consensus 100 NLGNtlKv~G~fdeA~~cc~rhLd~are------LgDrv~e~RAlYNlgnvYhakGk~~g~~~pee~g~f~~ev~~al~~ 173 (639)
T KOG1130|consen 100 NLGNTLKVKGAFDEALTCCFRHLDFARE------LGDRVLESRALYNLGNVYHAKGKCTGLEAPEEKGAFNAEVTSALEN 173 (639)
T ss_pred cccchhhhhcccchHHHHHHHHhHHHHH------HhHHHhhhHHHhhhhhhhhhcccccCCCChhhcccccHHHHHHHHH
Confidence 8999999999999999999998877532 35556667888999999887777511100 01123455
Q ss_pred HHHHHHHhhhcCcc------chHHHHHHHHHHHHcCChHHHHHHHHHHhhcCCCC------hHHHHHHHHHHHHcCCHHH
Q 012143 151 ILSKLKESMQSDTR------QAVVWNTLGLILLKSGRLQSSISVLSSLLAVDPNN------CDCIGNLGIAYFQSGDMEQ 218 (470)
Q Consensus 151 A~~~~~~~~~~~p~------~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~------~~~~~~la~~~~~~g~~~~ 218 (470)
|.++|..-++.... ...++-++|..|+-+|+|+.|+..-+.-+.+.... ..++.++|.++.-+|+++.
T Consensus 174 Av~fy~eNL~l~~~lgDr~aqGRa~GnLGNTyYlLGdf~~ai~~H~~RL~ia~efGDrAaeRRA~sNlgN~hiflg~fe~ 253 (639)
T KOG1130|consen 174 AVKFYMENLELSEKLGDRLAQGRAYGNLGNTYYLLGDFDQAIHFHKLRLEIAQEFGDRAAERRAHSNLGNCHIFLGNFEL 253 (639)
T ss_pred HHHHHHHHHHHHHHhhhHHhhcchhcccCceeeeeccHHHHHHHHHHHHHHHHHhhhHHHHHHhhcccchhhhhhcccHh
Confidence 55666555443322 13467788999999999999999988877764433 3589999999999999999
Q ss_pred HHHHHHHHHhhC----CCCh--HHHHHHHHHHHhhhcccccccccchhhhhHHHhcCCHHHHHHHHHHHHhcCCC-----
Q 012143 219 SAKCFQDLILKD----QNHP--AALINYAALLLCKYGSVLAGAGANTGEGACLDQASAVNVAKECLLAALKADPK----- 287 (470)
Q Consensus 219 A~~~~~~~l~~~----p~~~--~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~p~----- 287 (470)
|+++|++.+.+. .... ...+.+| ..|.-..++++||.++.+-+.+...
T Consensus 254 A~ehYK~tl~LAielg~r~vEAQscYSLg---------------------Ntytll~e~~kAI~Yh~rHLaIAqeL~Dri 312 (639)
T KOG1130|consen 254 AIEHYKLTLNLAIELGNRTVEAQSCYSLG---------------------NTYTLLKEVQKAITYHQRHLAIAQELEDRI 312 (639)
T ss_pred HHHHHHHHHHHHHHhcchhHHHHHHHHhh---------------------hHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 999999987542 2222 2234444 4444788899999999998876432
Q ss_pred -CHHHHHHHHHHHHHcCChhHHHHHHHHHHhcC
Q 012143 288 -AAHIWANLANAYYLTGDHRSSGKCLEKAAKLE 319 (470)
Q Consensus 288 -~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~ 319 (470)
...+++.||..+...|..++|+.+.+..++..
T Consensus 313 Ge~RacwSLgna~~alg~h~kAl~fae~hl~~s 345 (639)
T KOG1130|consen 313 GELRACWSLGNAFNALGEHRKALYFAELHLRSS 345 (639)
T ss_pred hhHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHH
Confidence 56789999999999999999999988887653
|
|
| >KOG2376 consensus Signal recognition particle, subunit Srp72 [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=99.64 E-value=3.5e-12 Score=113.87 Aligned_cols=362 Identities=14% Similarity=0.086 Sum_probs=206.0
Q ss_pred hhhhcChhhHHHHHHHHHHhCCCChhHHHHHHHHHHHhCChhHHHHHHHHHHHHHhhhhcccchhhhHHHHHHhhhcccc
Q 012143 51 SSREEKVSSLKTGLVHVARKMPKNAHAHFLLGLMYQRLGQPLKAVSSYEKAEEILLRCEADIARPELLSLVQIHHAQCLL 130 (470)
Q Consensus 51 ~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 130 (470)
+...|+|++|.+...+++...|++.++.+..-.+..+.++|++|+...+.-...... ...+ +..+.+
T Consensus 22 ~~~~~e~e~a~k~~~Kil~~~pdd~~a~~cKvValIq~~ky~~ALk~ikk~~~~~~~------~~~~-------fEKAYc 88 (652)
T KOG2376|consen 22 HGKNGEYEEAVKTANKILSIVPDDEDAIRCKVVALIQLDKYEDALKLIKKNGALLVI------NSFF-------FEKAYC 88 (652)
T ss_pred hccchHHHHHHHHHHHHHhcCCCcHhhHhhhHhhhhhhhHHHHHHHHHHhcchhhhc------chhh-------HHHHHH
Confidence 567899999999999999999999999999999999999999998554442221100 0000 112222
Q ss_pred ccccCCCccccccCcccHHHHHHHHHHhhhcCccchHHHHHHHHHHHHcCChHHHHHHHHHHhhcCCCChHHHHHHHHHH
Q 012143 131 PESSGDNSLDKELEPEELEEILSKLKESMQSDTRQAVVWNTLGLILLKSGRLQSSISVLSSLLAVDPNNCDCIGNLGIAY 210 (470)
Q Consensus 131 ~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~la~~~ 210 (470)
.++.+..++|+..++ ..++.+..+....|.+++++|+|++|+..|+..++.+.++.+........-
T Consensus 89 -----------~Yrlnk~Dealk~~~---~~~~~~~~ll~L~AQvlYrl~~ydealdiY~~L~kn~~dd~d~~~r~nl~a 154 (652)
T KOG2376|consen 89 -----------EYRLNKLDEALKTLK---GLDRLDDKLLELRAQVLYRLERYDEALDIYQHLAKNNSDDQDEERRANLLA 154 (652)
T ss_pred -----------HHHcccHHHHHHHHh---cccccchHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCchHHHHHHHHHHH
Confidence 234455577777777 334445556677777777777777777777777766655554433332221
Q ss_pred HHcCCHHHHHHHHHHHHhhCCC-ChHHHHHHHHHHHhhhcccccccccchhhhhHHHhcCCHHHHHHHHHHHHhcCC---
Q 012143 211 FQSGDMEQSAKCFQDLILKDQN-HPAALINYAALLLCKYGSVLAGAGANTGEGACLDQASAVNVAKECLLAALKADP--- 286 (470)
Q Consensus 211 ~~~g~~~~A~~~~~~~l~~~p~-~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~p--- 286 (470)
.... ..+ . ..+.....|. ..+.+++.+.++. ..|+|.+|++.+++++.+..
T Consensus 155 ~~a~--l~~-~-~~q~v~~v~e~syel~yN~Ac~~i---------------------~~gky~qA~elL~kA~~~~~e~l 209 (652)
T KOG2376|consen 155 VAAA--LQV-Q-LLQSVPEVPEDSYELLYNTACILI---------------------ENGKYNQAIELLEKALRICREKL 209 (652)
T ss_pred HHHh--hhH-H-HHHhccCCCcchHHHHHHHHHHHH---------------------hcccHHHHHHHHHHHHHHHHHhh
Confidence 1110 000 0 2222233332 3344555555555 79999999999999954311
Q ss_pred -----C-------CHHHHHHHHHHHHHcCChhHHHHHHHHHHhcCCCcccHHHHHHHHHHHHhh---hccC---------
Q 012143 287 -----K-------AAHIWANLANAYYLTGDHRSSGKCLEKAAKLEPNCMSTRYAVAVSRIKDAE---RSQE--------- 342 (470)
Q Consensus 287 -----~-------~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~p~~~~~~~~l~~~~~~~~~---~~~~--------- 342 (470)
. -..+...++.++..+|+..+|...|...++.+|.+......... .+.... ...+
T Consensus 210 ~~~d~~eEeie~el~~IrvQlayVlQ~~Gqt~ea~~iy~~~i~~~~~D~~~~Av~~N-NLva~~~d~~~~d~~~l~~k~~ 288 (652)
T KOG2376|consen 210 EDEDTNEEEIEEELNPIRVQLAYVLQLQGQTAEASSIYVDIIKRNPADEPSLAVAVN-NLVALSKDQNYFDGDLLKSKKS 288 (652)
T ss_pred cccccchhhHHHHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHhcCCCchHHHHHhc-chhhhccccccCchHHHHHHHH
Confidence 1 13467889999999999999999999999998877543221110 000000 0000
Q ss_pred ----------------------c----hHHhhhhHHHHHHHhhcCCCCCCCcHHHHHHHHHHHhccccHHHHHHHHHHHh
Q 012143 343 ----------------------P----TEQLSWAGNEMASILREGDPVQIEPPIAWAGFAAVQKTHHEVAAAFETEENEL 396 (470)
Q Consensus 343 ----------------------~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~ 396 (470)
. ...+......+.+.........|..................+.+++..+....
T Consensus 289 ~~~~l~~~~l~~Ls~~qk~~i~~N~~lL~l~tnk~~q~r~~~a~lp~~~p~~~~~~ll~~~t~~~~~~~~ka~e~L~~~~ 368 (652)
T KOG2376|consen 289 QVFKLAEFLLSKLSKKQKQAIYRNNALLALFTNKMDQVRELSASLPGMSPESLFPILLQEATKVREKKHKKAIELLLQFA 368 (652)
T ss_pred HHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHhCCccCchHHHHHHHHHHHHHHHHHHhhhHHHHHHHh
Confidence 0 00000001111222222222222221112222222233335667777776655
Q ss_pred cchhhh---hHhhHHHHHHHhccHHHHHHHHHHHH--------hcCCCcHHHHHHHHHHHHHcCChHHHHHHHHHHHHhh
Q 012143 397 SKMEEC---AGAGESAFLDQASAVNVAKECLLAAL--------KADPKAAHIWANLANAYYLTGDHRSSGKCLEKVLMVY 465 (470)
Q Consensus 397 ~~~~~~---~~~~l~~~~~~~~~~~~A~~~~~~al--------~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~ 465 (470)
+..+.. +.+.++......|+++.|+..+...+ +.. ..|.+-..+-..+.+.++.+.|...+.+|+.-+
T Consensus 369 ~~~p~~s~~v~L~~aQl~is~gn~~~A~~il~~~~~~~~ss~~~~~-~~P~~V~aiv~l~~~~~~~~~a~~vl~~Ai~~~ 447 (652)
T KOG2376|consen 369 DGHPEKSKVVLLLRAQLKISQGNPEVALEILSLFLESWKSSILEAK-HLPGTVGAIVALYYKIKDNDSASAVLDSAIKWW 447 (652)
T ss_pred ccCCchhHHHHHHHHHHHHhcCCHHHHHHHHHHHhhhhhhhhhhhc-cChhHHHHHHHHHHhccCCccHHHHHHHHHHHH
Confidence 544443 56667777777888888888777332 221 224444444555666777777777777777655
Q ss_pred c
Q 012143 466 C 466 (470)
Q Consensus 466 ~ 466 (470)
.
T Consensus 448 ~ 448 (652)
T KOG2376|consen 448 R 448 (652)
T ss_pred H
Confidence 3
|
|
| >PRK15179 Vi polysaccharide biosynthesis protein TviE; Provisional | Back alignment and domain information |
|---|
Probab=99.64 E-value=6.2e-14 Score=134.39 Aligned_cols=156 Identities=9% Similarity=0.056 Sum_probs=144.5
Q ss_pred HHHHHHHHHhhhcCccchHHHHHHHHHHHHcCChHHHHHHHHHHhhcCCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHh
Q 012143 149 EEILSKLKESMQSDTRQAVVWNTLGLILLKSGRLQSSISVLSSLLAVDPNNCDCIGNLGIAYFQSGDMEQSAKCFQDLIL 228 (470)
Q Consensus 149 ~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~ 228 (470)
.+++.-+....+..|.++++++.||.+....|.+++|...++.+++..|++..++..++.++.+.+++++|+..+++++.
T Consensus 69 ~~~~~~~~~~~~~~~~~~~~~~~La~i~~~~g~~~ea~~~l~~~~~~~Pd~~~a~~~~a~~L~~~~~~eeA~~~~~~~l~ 148 (694)
T PRK15179 69 AAALPELLDYVRRYPHTELFQVLVARALEAAHRSDEGLAVWRGIHQRFPDSSEAFILMLRGVKRQQGIEAGRAEIELYFS 148 (694)
T ss_pred HhhHHHHHHHHHhccccHHHHHHHHHHHHHcCCcHHHHHHHHHHHhhCCCcHHHHHHHHHHHHHhccHHHHHHHHHHHhh
Confidence 44555555666778999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hCCCChHHHHHHHHHHHhhhcccccccccchhhhhHHHhcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCChhHH
Q 012143 229 KDQNHPAALINYAALLLCKYGSVLAGAGANTGEGACLDQASAVNVAKECLLAALKADPKAAHIWANLANAYYLTGDHRSS 308 (470)
Q Consensus 229 ~~p~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~la~~~~~~g~~~~A 308 (470)
.+|++..+++.+|.++. +.|++++|+.+|++++..+|+++.++..+|.++...|+.++|
T Consensus 149 ~~p~~~~~~~~~a~~l~---------------------~~g~~~~A~~~y~~~~~~~p~~~~~~~~~a~~l~~~G~~~~A 207 (694)
T PRK15179 149 GGSSSAREILLEAKSWD---------------------EIGQSEQADACFERLSRQHPEFENGYVGWAQSLTRRGALWRA 207 (694)
T ss_pred cCCCCHHHHHHHHHHHH---------------------HhcchHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHcCCHHHH
Confidence 99999999999999888 799999999999999999999999999999999999999999
Q ss_pred HHHHHHHHhcCCCcccH
Q 012143 309 GKCLEKAAKLEPNCMST 325 (470)
Q Consensus 309 ~~~~~~a~~~~p~~~~~ 325 (470)
...|++++....+-...
T Consensus 208 ~~~~~~a~~~~~~~~~~ 224 (694)
T PRK15179 208 RDVLQAGLDAIGDGARK 224 (694)
T ss_pred HHHHHHHHHhhCcchHH
Confidence 99999999887654433
|
|
| >KOG3060 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=99.64 E-value=2.2e-13 Score=108.72 Aligned_cols=169 Identities=19% Similarity=0.205 Sum_probs=156.9
Q ss_pred cCcccHHHHHHHHHHhhhcCccchHHHHHHHHHHHHcCChHHHHHHHHHHhhcCCCChHHHHHHHHHHHHcCCHHHHHHH
Q 012143 143 LEPEELEEILSKLKESMQSDTRQAVVWNTLGLILLKSGRLQSSISVLSSLLAVDPNNCDCIGNLGIAYFQSGDMEQSAKC 222 (470)
Q Consensus 143 ~~~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~la~~~~~~g~~~~A~~~ 222 (470)
+..|+.+-|..++++.....|.+..+-...|..+...|++++|+++|+..++-+|.+..++...-.+...+|+.-+|++.
T Consensus 63 ld~~~~~lAq~C~~~L~~~fp~S~RV~~lkam~lEa~~~~~~A~e~y~~lL~ddpt~~v~~KRKlAilka~GK~l~aIk~ 142 (289)
T KOG3060|consen 63 LDTGRDDLAQKCINQLRDRFPGSKRVGKLKAMLLEATGNYKEAIEYYESLLEDDPTDTVIRKRKLAILKAQGKNLEAIKE 142 (289)
T ss_pred HHhcchHHHHHHHHHHHHhCCCChhHHHHHHHHHHHhhchhhHHHHHHHHhccCcchhHHHHHHHHHHHHcCCcHHHHHH
Confidence 35577799999999999999999999999999999999999999999999999999999999888899999999999999
Q ss_pred HHHHHhhCCCChHHHHHHHHHHHhhhcccccccccchhhhhHHHhcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHc
Q 012143 223 FQDLILKDQNHPAALINYAALLLCKYGSVLAGAGANTGEGACLDQASAVNVAKECLLAALKADPKAAHIWANLANAYYLT 302 (470)
Q Consensus 223 ~~~~l~~~p~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~la~~~~~~ 302 (470)
+...++..+.+.++|..++.+|. ..|+|++|.-|+++.+-+.|.++..+..+|.+++-+
T Consensus 143 ln~YL~~F~~D~EAW~eLaeiY~---------------------~~~~f~kA~fClEE~ll~~P~n~l~f~rlae~~Yt~ 201 (289)
T KOG3060|consen 143 LNEYLDKFMNDQEAWHELAEIYL---------------------SEGDFEKAAFCLEELLLIQPFNPLYFQRLAEVLYTQ 201 (289)
T ss_pred HHHHHHHhcCcHHHHHHHHHHHH---------------------hHhHHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHH
Confidence 99999999999999999999998 699999999999999999999999999999999988
Q ss_pred C---ChhHHHHHHHHHHhcCCCcccHHHHHHHH
Q 012143 303 G---DHRSSGKCLEKAAKLEPNCMSTRYAVAVS 332 (470)
Q Consensus 303 g---~~~~A~~~~~~a~~~~p~~~~~~~~l~~~ 332 (470)
| ++.-|.++|.++++++|.+..+++++.++
T Consensus 202 gg~eN~~~arkyy~~alkl~~~~~ral~GI~lc 234 (289)
T KOG3060|consen 202 GGAENLELARKYYERALKLNPKNLRALFGIYLC 234 (289)
T ss_pred hhHHHHHHHHHHHHHHHHhChHhHHHHHHHHHH
Confidence 7 46779999999999999888888876553
|
|
| >COG3071 HemY Uncharacterized enzyme of heme biosynthesis [Coenzyme metabolism] | Back alignment and domain information |
|---|
Probab=99.62 E-value=1e-11 Score=105.98 Aligned_cols=259 Identities=17% Similarity=0.103 Sum_probs=176.5
Q ss_pred CcccHHHHHHHHHHhhhcCcc-chHHHHHHHHHHHHcCChHHHHHHHHHHhhcCCCChHHHHHHHHHHHHcCCHHHHHHH
Q 012143 144 EPEELEEILSKLKESMQSDTR-QAVVWNTLGLILLKSGRLQSSISVLSSLLAVDPNNCDCIGNLGIAYFQSGDMEQSAKC 222 (470)
Q Consensus 144 ~~~~~~~A~~~~~~~~~~~p~-~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~la~~~~~~g~~~~A~~~ 222 (470)
..|+++.+-.++.++-+..++ .......++.+...+|+++.|.....++++..|.++.+......+|...|++......
T Consensus 130 qrgd~~~an~yL~eaae~~~~~~l~v~ltrarlll~~~d~~aA~~~v~~ll~~~pr~~~vlrLa~r~y~~~g~~~~ll~~ 209 (400)
T COG3071 130 QRGDEDRANRYLAEAAELAGDDTLAVELTRARLLLNRRDYPAARENVDQLLEMTPRHPEVLRLALRAYIRLGAWQALLAI 209 (400)
T ss_pred hcccHHHHHHHHHHHhccCCCchHHHHHHHHHHHHhCCCchhHHHHHHHHHHhCcCChHHHHHHHHHHHHhccHHHHHHH
Confidence 445556666666666665332 2456777889999999999999999999999999999999999999999999999998
Q ss_pred HHHHHhhCCCChHHHHHHHH-HHHhhhcccccccccchhhhhHHHhcCCHHHHH---HHHHHHHhcCCCCHHHHHHHHHH
Q 012143 223 FQDLILKDQNHPAALINYAA-LLLCKYGSVLAGAGANTGEGACLDQASAVNVAK---ECLLAALKADPKAAHIWANLANA 298 (470)
Q Consensus 223 ~~~~l~~~p~~~~~~~~l~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~---~~~~~~~~~~p~~~~~~~~la~~ 298 (470)
+.+.-+..--+.+-...+-. .+.. ++.+.++-..+. .+.+..-..-..++.+...++.-
T Consensus 210 l~~L~ka~~l~~~e~~~le~~a~~g-----------------lL~q~~~~~~~~gL~~~W~~~pr~lr~~p~l~~~~a~~ 272 (400)
T COG3071 210 LPKLRKAGLLSDEEAARLEQQAWEG-----------------LLQQARDDNGSEGLKTWWKNQPRKLRNDPELVVAYAER 272 (400)
T ss_pred HHHHHHccCCChHHHHHHHHHHHHH-----------------HHHHHhccccchHHHHHHHhccHHhhcChhHHHHHHHH
Confidence 88877654332222111111 1110 001122222222 23333222233468888889999
Q ss_pred HHHcCChhHHHHHHHHHHhcCCCcccHHHHHHHHHHHHhhhccCchHHhhhhHHHHHHHhhcCCCCCCCcHHHHHHHHHH
Q 012143 299 YYLTGDHRSSGKCLEKAAKLEPNCMSTRYAVAVSRIKDAERSQEPTEQLSWAGNEMASILREGDPVQIEPPIAWAGFAAV 378 (470)
Q Consensus 299 ~~~~g~~~~A~~~~~~a~~~~p~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~ 378 (470)
+...|++++|.+..+.+++..-+.. .. .+- .
T Consensus 273 li~l~~~~~A~~~i~~~Lk~~~D~~--L~-----~~~-----------------------~------------------- 303 (400)
T COG3071 273 LIRLGDHDEAQEIIEDALKRQWDPR--LC-----RLI-----------------------P------------------- 303 (400)
T ss_pred HHHcCChHHHHHHHHHHHHhccChh--HH-----HHH-----------------------h-------------------
Confidence 9999999999999999998765532 11 000 0
Q ss_pred HhccccHHHHHHHHHHHh--cchhhhhHhhHHHHHHHhccHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHcCChHHHHH
Q 012143 379 QKTHHEVAAAFETEENEL--SKMEECAGAGESAFLDQASAVNVAKECLLAALKADPKAAHIWANLANAYYLTGDHRSSGK 456 (470)
Q Consensus 379 ~~~~~~~~~A~~~~~~~~--~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~ 456 (470)
....++...-++..++.+ .+.++..+..+|..+.+.+.|.+|..+|+.++...|+ ...+..+|.++.++|+..+|.+
T Consensus 304 ~l~~~d~~~l~k~~e~~l~~h~~~p~L~~tLG~L~~k~~~w~kA~~~leaAl~~~~s-~~~~~~la~~~~~~g~~~~A~~ 382 (400)
T COG3071 304 RLRPGDPEPLIKAAEKWLKQHPEDPLLLSTLGRLALKNKLWGKASEALEAALKLRPS-ASDYAELADALDQLGEPEEAEQ 382 (400)
T ss_pred hcCCCCchHHHHHHHHHHHhCCCChhHHHHHHHHHHHhhHHHHHHHHHHHHHhcCCC-hhhHHHHHHHHHHcCChHHHHH
Confidence 011122222233333322 2444567888999999999999999999999999875 5678999999999999999999
Q ss_pred HHHHHHHhhccCC
Q 012143 457 CLEKVLMVYCSSN 469 (470)
Q Consensus 457 ~~~~al~~~~~~~ 469 (470)
.+++++-++.+++
T Consensus 383 ~r~e~L~~~~~~~ 395 (400)
T COG3071 383 VRREALLLTRQPN 395 (400)
T ss_pred HHHHHHHHhcCCC
Confidence 9999997775554
|
|
| >COG5010 TadD Flp pilus assembly protein TadD, contains TPR repeats [Intracellular trafficking and secretion] | Back alignment and domain information |
|---|
Probab=99.61 E-value=2.9e-13 Score=109.16 Aligned_cols=145 Identities=21% Similarity=0.283 Sum_probs=122.0
Q ss_pred HHHHHHHHHhhhcCccchHHHHHHHHHHHHcCChHHHHHHHHHHhhcCCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHh
Q 012143 149 EEILSKLKESMQSDTRQAVVWNTLGLILLKSGRLQSSISVLSSLLAVDPNNCDCIGNLGIAYFQSGDMEQSAKCFQDLIL 228 (470)
Q Consensus 149 ~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~ 228 (470)
+.+..+..++...+|.+...+..+|...++.|++..|+..++++....|++..+|..+|.+|.+.|++++|...|.++++
T Consensus 83 ~~~l~~~~~~~~~~~~d~~ll~~~gk~~~~~g~~~~A~~~~rkA~~l~p~d~~~~~~lgaaldq~Gr~~~Ar~ay~qAl~ 162 (257)
T COG5010 83 DSSLAVLQKSAIAYPKDRELLAAQGKNQIRNGNFGEAVSVLRKAARLAPTDWEAWNLLGAALDQLGRFDEARRAYRQALE 162 (257)
T ss_pred cchHHHHhhhhccCcccHHHHHHHHHHHHHhcchHHHHHHHHHHhccCCCChhhhhHHHHHHHHccChhHHHHHHHHHHH
Confidence 33334444444446677777777889999999999999999999999999999999999999999999999999999999
Q ss_pred hCCCChHHHHHHHHHHHhhhcccccccccchhhhhHHHhcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCChhHH
Q 012143 229 KDQNHPAALINYAALLLCKYGSVLAGAGANTGEGACLDQASAVNVAKECLLAALKADPKAAHIWANLANAYYLTGDHRSS 308 (470)
Q Consensus 229 ~~p~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~la~~~~~~g~~~~A 308 (470)
+.|+++....+++..+. -.|+++.|..++..+....+.+..+..+++.+...+|++++|
T Consensus 163 L~~~~p~~~nNlgms~~---------------------L~gd~~~A~~lll~a~l~~~ad~~v~~NLAl~~~~~g~~~~A 221 (257)
T COG5010 163 LAPNEPSIANNLGMSLL---------------------LRGDLEDAETLLLPAYLSPAADSRVRQNLALVVGLQGDFREA 221 (257)
T ss_pred hccCCchhhhhHHHHHH---------------------HcCCHHHHHHHHHHHHhCCCCchHHHHHHHHHHhhcCChHHH
Confidence 99999999999888887 689999999999999888888899999999999999999988
Q ss_pred HHHHHH
Q 012143 309 GKCLEK 314 (470)
Q Consensus 309 ~~~~~~ 314 (470)
.....+
T Consensus 222 ~~i~~~ 227 (257)
T COG5010 222 EDIAVQ 227 (257)
T ss_pred Hhhccc
Confidence 776544
|
|
| >KOG2047 consensus mRNA splicing factor [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=99.60 E-value=1.8e-11 Score=110.43 Aligned_cols=417 Identities=15% Similarity=0.114 Sum_probs=270.0
Q ss_pred hhhhhHHHHHHHHHHHHhcCCCCcchhhhcccch-------hhhhcChhhHHHHHHHHHHhCCCChhHHHHHHHHHHHhC
Q 012143 17 KLGKCRSRISSKMDSALEFGVDADGDQSGLGTSS-------SSREEKVSSLKTGLVHVARKMPKNAHAHFLLGLMYQRLG 89 (470)
Q Consensus 17 ~~g~~~~a~~~~~~~~l~~~p~~~~~~~~~~~~~-------~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~l~~~~~~~g 89 (470)
+.|...+.+.-.|++++..-|.+...|+..-..- ..-...|.....+|++++-.-.+.|..|.........+|
T Consensus 37 k~~sp~k~~~~lYERal~~lp~sykiW~~YL~~R~~~vk~~~~T~~~~~~vn~c~er~lv~mHkmpRIwl~Ylq~l~~Q~ 116 (835)
T KOG2047|consen 37 KAGSPDKQRNLLYERALKELPGSYKIWYDYLKARRAQVKHLCPTDPAYESVNNCFERCLVFMHKMPRIWLDYLQFLIKQG 116 (835)
T ss_pred HccCChHHHHHHHHHHHHHCCCchHHHHHHHHHHHHHhhccCCCChHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHhcc
Confidence 4566666665789999999999999988533110 122345777788899998888888999999999999999
Q ss_pred ChhHHHHHHHHHHHHHhhhhcccchhhhHHHHHHhhhccccccccCCCccccccCcccHHHHHHHHHHhhhcCccchHHH
Q 012143 90 QPLKAVSSYEKAEEILLRCEADIARPELLSLVQIHHAQCLLPESSGDNSLDKELEPEELEEILSKLKESMQSDTRQAVVW 169 (470)
Q Consensus 90 ~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~ 169 (470)
+...-...|.+|+...|-.......+-++.... ..+-.+-++..|++.++..|...+
T Consensus 117 ~iT~tR~tfdrALraLpvtqH~rIW~lyl~Fv~---------------------~~~lPets~rvyrRYLk~~P~~~e-- 173 (835)
T KOG2047|consen 117 LITRTRRTFDRALRALPVTQHDRIWDLYLKFVE---------------------SHGLPETSIRVYRRYLKVAPEARE-- 173 (835)
T ss_pred hHHHHHHHHHHHHHhCchHhhccchHHHHHHHH---------------------hCCChHHHHHHHHHHHhcCHHHHH--
Confidence 999999999999998776544333333332221 223346788888888888876543
Q ss_pred HHHHHHHHHcCChHHHHHHHHHHhhc------------------------CCCC---------------------hHHHH
Q 012143 170 NTLGLILLKSGRLQSSISVLSSLLAV------------------------DPNN---------------------CDCIG 204 (470)
Q Consensus 170 ~~l~~~~~~~~~~~~A~~~~~~a~~~------------------------~~~~---------------------~~~~~ 204 (470)
.....+...+++++|.+.+...+.. +|+. ...|.
T Consensus 174 -eyie~L~~~d~~~eaa~~la~vln~d~f~sk~gkSn~qlw~elcdlis~~p~~~~slnvdaiiR~gi~rftDq~g~Lw~ 252 (835)
T KOG2047|consen 174 -EYIEYLAKSDRLDEAAQRLATVLNQDEFVSKKGKSNHQLWLELCDLISQNPDKVQSLNVDAIIRGGIRRFTDQLGFLWC 252 (835)
T ss_pred -HHHHHHHhccchHHHHHHHHHhcCchhhhhhcccchhhHHHHHHHHHHhCcchhcccCHHHHHHhhcccCcHHHHHHHH
Confidence 3345566777788877777776542 1211 23588
Q ss_pred HHHHHHHHcCCHHHHHHHHHHHHhhCC---CChHHHHHHHHHHH-----hhh------ccccc-----------------
Q 012143 205 NLGIAYFQSGDMEQSAKCFQDLILKDQ---NHPAALINYAALLL-----CKY------GSVLA----------------- 253 (470)
Q Consensus 205 ~la~~~~~~g~~~~A~~~~~~~l~~~p---~~~~~~~~l~~~~~-----~~~------~~~~~----------------- 253 (470)
.||..|.+.|.+++|...|++++..-- +....+...+..-. ... .....
T Consensus 253 SLAdYYIr~g~~ekarDvyeeai~~v~tvrDFt~ifd~Ya~FEE~~~~~~me~a~~~~~n~ed~~dl~~~~a~~e~lm~r 332 (835)
T KOG2047|consen 253 SLADYYIRSGLFEKARDVYEEAIQTVMTVRDFTQIFDAYAQFEESCVAAKMELADEESGNEEDDVDLELHMARFESLMNR 332 (835)
T ss_pred HHHHHHHHhhhhHHHHHHHHHHHHhheehhhHHHHHHHHHHHHHHHHHHHHhhhhhcccChhhhhhHHHHHHHHHHHHhc
Confidence 899999999999999999999885421 11111111111000 000 00000
Q ss_pred ---------------ccccchhhhhHHHhcCCHHHHHHHHHHHHhc-CCC-----CHHHHHHHHHHHHHcCChhHHHHHH
Q 012143 254 ---------------GAGANTGEGACLDQASAVNVAKECLLAALKA-DPK-----AAHIWANLANAYYLTGDHRSSGKCL 312 (470)
Q Consensus 254 ---------------~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~-~p~-----~~~~~~~la~~~~~~g~~~~A~~~~ 312 (470)
..+.| .-.+-...|+..+-+..|.+++.. +|. ....|..+|..|...|+.+.|...|
T Consensus 333 r~~~lNsVlLRQn~~nV~eW--~kRV~l~e~~~~~~i~tyteAv~~vdP~ka~Gs~~~Lw~~faklYe~~~~l~~aRvif 410 (835)
T KOG2047|consen 333 RPLLLNSVLLRQNPHNVEEW--HKRVKLYEGNAAEQINTYTEAVKTVDPKKAVGSPGTLWVEFAKLYENNGDLDDARVIF 410 (835)
T ss_pred cchHHHHHHHhcCCccHHHH--HhhhhhhcCChHHHHHHHHHHHHccCcccCCCChhhHHHHHHHHHHhcCcHHHHHHHH
Confidence 00111 123334567888889999988864 554 3568999999999999999999999
Q ss_pred HHHHhcCCCcc----cHHHHHHHHHHHHhhhccCchHHhhhhHHHHHHHhh--------cCCCCCC------CcHHHHHH
Q 012143 313 EKAAKLEPNCM----STRYAVAVSRIKDAERSQEPTEQLSWAGNEMASILR--------EGDPVQI------EPPIAWAG 374 (470)
Q Consensus 313 ~~a~~~~p~~~----~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--------~~~~~~~------~~~~~~~~ 374 (470)
+++.+..=... ..|...+-..+. ...+..+..-+..... ......| ....+|..
T Consensus 411 eka~~V~y~~v~dLa~vw~~waemElr--------h~~~~~Al~lm~~A~~vP~~~~~~~yd~~~pvQ~rlhrSlkiWs~ 482 (835)
T KOG2047|consen 411 EKATKVPYKTVEDLAEVWCAWAEMELR--------HENFEAALKLMRRATHVPTNPELEYYDNSEPVQARLHRSLKIWSM 482 (835)
T ss_pred HHhhcCCccchHHHHHHHHHHHHHHHh--------hhhHHHHHHHHHhhhcCCCchhhhhhcCCCcHHHHHHHhHHHHHH
Confidence 99998653322 223322221111 1111111111111110 0111111 24567888
Q ss_pred HHHHHhccccHHHHHHHHHHHhc--chhhhhHhhHHHHHHHhccHHHHHHHHHHHHhcC--CCcHHHHHHHHHHH---HH
Q 012143 375 FAAVQKTHHEVAAAFETEENELS--KMEECAGAGESAFLDQASAVNVAKECLLAALKAD--PKAAHIWANLANAY---YL 447 (470)
Q Consensus 375 l~~~~~~~~~~~~A~~~~~~~~~--~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~--p~~~~~~~~la~~~---~~ 447 (470)
.+......|-++.....|.+.++ -..+..-.+.|..+....-++++.+.|++-+.+. |.-.++|...-... +.
T Consensus 483 y~DleEs~gtfestk~vYdriidLriaTPqii~NyAmfLEeh~yfeesFk~YErgI~LFk~p~v~diW~tYLtkfi~ryg 562 (835)
T KOG2047|consen 483 YADLEESLGTFESTKAVYDRIIDLRIATPQIIINYAMFLEEHKYFEESFKAYERGISLFKWPNVYDIWNTYLTKFIKRYG 562 (835)
T ss_pred HHHHHHHhccHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhHHHHHHHHHHHcCCccCCCccHHHHHHHHHHHHHHHhc
Confidence 88888888989888888888655 4445566677778888888999999999999875 45566665443332 33
Q ss_pred cCChHHHHHHHHHHHHhhcc
Q 012143 448 TGDHRSSGKCLEKVLMVYCS 467 (470)
Q Consensus 448 ~g~~~~A~~~~~~al~~~~~ 467 (470)
.-..+.|...|++|++..|+
T Consensus 563 g~klEraRdLFEqaL~~Cpp 582 (835)
T KOG2047|consen 563 GTKLERARDLFEQALDGCPP 582 (835)
T ss_pred CCCHHHHHHHHHHHHhcCCH
Confidence 45789999999999997664
|
|
| >KOG3060 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=99.60 E-value=1.6e-12 Score=103.84 Aligned_cols=161 Identities=16% Similarity=0.161 Sum_probs=137.8
Q ss_pred ccHHHHHHHHHHhhh------cCccchHHHHHHHHHHHHcCChHHHHHHHHHHhhcCCCChHHHHHHHHHHHHcCCHHHH
Q 012143 146 EELEEILSKLKESMQ------SDTRQAVVWNTLGLILLKSGRLQSSISVLSSLLAVDPNNCDCIGNLGIAYFQSGDMEQS 219 (470)
Q Consensus 146 ~~~~~A~~~~~~~~~------~~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~la~~~~~~g~~~~A 219 (470)
.+.++-++.....+. ..|+...++-....+....|+.+-|..++++.....|.+..+....|..+...|++++|
T Consensus 26 rnseevv~l~~~~~~~~k~~~~g~e~w~l~EqV~IAAld~~~~~lAq~C~~~L~~~fp~S~RV~~lkam~lEa~~~~~~A 105 (289)
T KOG3060|consen 26 RNSEEVVQLGSEVLNYSKSGALGDEIWTLYEQVFIAALDTGRDDLAQKCINQLRDRFPGSKRVGKLKAMLLEATGNYKEA 105 (289)
T ss_pred cCHHHHHHHHHHHHHHhhhcccCchHHHHHHHHHHHHHHhcchHHHHHHHHHHHHhCCCChhHHHHHHHHHHHhhchhhH
Confidence 344666666655544 33444556666777888899999999999999988999999999999999999999999
Q ss_pred HHHHHHHHhhCCCChHHHHHHHHHHHhhhcccccccccchhhhhHHHhcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHH
Q 012143 220 AKCFQDLILKDQNHPAALINYAALLLCKYGSVLAGAGANTGEGACLDQASAVNVAKECLLAALKADPKAAHIWANLANAY 299 (470)
Q Consensus 220 ~~~~~~~l~~~p~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~la~~~ 299 (470)
+++|+..++-+|.+...+.....+.. ..|+.-+|++.+..-++..+.+.++|..++.+|
T Consensus 106 ~e~y~~lL~ddpt~~v~~KRKlAilk---------------------a~GK~l~aIk~ln~YL~~F~~D~EAW~eLaeiY 164 (289)
T KOG3060|consen 106 IEYYESLLEDDPTDTVIRKRKLAILK---------------------AQGKNLEAIKELNEYLDKFMNDQEAWHELAEIY 164 (289)
T ss_pred HHHHHHHhccCcchhHHHHHHHHHHH---------------------HcCCcHHHHHHHHHHHHHhcCcHHHHHHHHHHH
Confidence 99999999999999888776655555 588889999999999999999999999999999
Q ss_pred HHcCChhHHHHHHHHHHhcCCCcccHHH
Q 012143 300 YLTGDHRSSGKCLEKAAKLEPNCMSTRY 327 (470)
Q Consensus 300 ~~~g~~~~A~~~~~~a~~~~p~~~~~~~ 327 (470)
...|+|++|.-++++++-+.|.++..+.
T Consensus 165 ~~~~~f~kA~fClEE~ll~~P~n~l~f~ 192 (289)
T KOG3060|consen 165 LSEGDFEKAAFCLEELLLIQPFNPLYFQ 192 (289)
T ss_pred HhHhHHHHHHHHHHHHHHcCCCcHHHHH
Confidence 9999999999999999999999764333
|
|
| >COG5010 TadD Flp pilus assembly protein TadD, contains TPR repeats [Intracellular trafficking and secretion] | Back alignment and domain information |
|---|
Probab=99.59 E-value=4.7e-13 Score=107.98 Aligned_cols=158 Identities=18% Similarity=0.179 Sum_probs=144.4
Q ss_pred cHHHHHHHHHHhhhcCccchHHHHHHHHHHHHcCChHHHHHHHHHHhhcCCCChHHHHHHHHHHHHcCCHHHHHHHHHHH
Q 012143 147 ELEEILSKLKESMQSDTRQAVVWNTLGLILLKSGRLQSSISVLSSLLAVDPNNCDCIGNLGIAYFQSGDMEQSAKCFQDL 226 (470)
Q Consensus 147 ~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~ 226 (470)
+...+...+-+....+|++..+ ..++..+...|+-+.+..+..++...+|.+...+..+|......|++.+|+..++++
T Consensus 48 q~~~a~~al~~~~~~~p~d~~i-~~~a~a~~~~G~a~~~l~~~~~~~~~~~~d~~ll~~~gk~~~~~g~~~~A~~~~rkA 126 (257)
T COG5010 48 QTQGAAAALGAAVLRNPEDLSI-AKLATALYLRGDADSSLAVLQKSAIAYPKDRELLAAQGKNQIRNGNFGEAVSVLRKA 126 (257)
T ss_pred hhhHHHHHHHHHHhcCcchHHH-HHHHHHHHhcccccchHHHHhhhhccCcccHHHHHHHHHHHHHhcchHHHHHHHHHH
Confidence 3455666677777889999999 999999999999999999999999999999999999999999999999999999999
Q ss_pred HhhCCCChHHHHHHHHHHHhhhcccccccccchhhhhHHHhcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCChh
Q 012143 227 ILKDQNHPAALINYAALLLCKYGSVLAGAGANTGEGACLDQASAVNVAKECLLAALKADPKAAHIWANLANAYYLTGDHR 306 (470)
Q Consensus 227 l~~~p~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~la~~~~~~g~~~ 306 (470)
....|+++.+|..+|.+|. +.|+++.|...|.+++++.|..+.+..++|..+.-.|+++
T Consensus 127 ~~l~p~d~~~~~~lgaald---------------------q~Gr~~~Ar~ay~qAl~L~~~~p~~~nNlgms~~L~gd~~ 185 (257)
T COG5010 127 ARLAPTDWEAWNLLGAALD---------------------QLGRFDEARRAYRQALELAPNEPSIANNLGMSLLLRGDLE 185 (257)
T ss_pred hccCCCChhhhhHHHHHHH---------------------HccChhHHHHHHHHHHHhccCCchhhhhHHHHHHHcCCHH
Confidence 9999999999999998887 7999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHhcCCCcccHH
Q 012143 307 SSGKCLEKAAKLEPNCMSTR 326 (470)
Q Consensus 307 ~A~~~~~~a~~~~p~~~~~~ 326 (470)
.|..++.++....+.+....
T Consensus 186 ~A~~lll~a~l~~~ad~~v~ 205 (257)
T COG5010 186 DAETLLLPAYLSPAADSRVR 205 (257)
T ss_pred HHHHHHHHHHhCCCCchHHH
Confidence 99999999988777655433
|
|
| >KOG1130 consensus Predicted G-alpha GTPase interaction protein, contains GoLoco domain [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=99.59 E-value=4.7e-14 Score=120.14 Aligned_cols=117 Identities=18% Similarity=0.166 Sum_probs=81.5
Q ss_pred HHHHHHHHhCChhHHHHHHHHHHHHHhhhhcccchhhhHHHHHHhhhccccccccCCCccccccCcccHHHHHHHHHH--
Q 012143 80 LLGLMYQRLGQPLKAVSSYEKAEEILLRCEADIARPELLSLVQIHHAQCLLPESSGDNSLDKELEPEELEEILSKLKE-- 157 (470)
Q Consensus 80 ~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~-- 157 (470)
.-|.-+++.|+....+.+|+.|++... .++..+..++..++.+| +-.++|++|+++-.-
T Consensus 22 lEGERLck~gdcraGv~ff~aA~qvGT--------eDl~tLSAIYsQLGNAy-----------fyL~DY~kAl~yH~hDl 82 (639)
T KOG1130|consen 22 LEGERLCKMGDCRAGVDFFKAALQVGT--------EDLSTLSAIYSQLGNAY-----------FYLKDYEKALKYHTHDL 82 (639)
T ss_pred HHHHHHHhccchhhhHHHHHHHHHhcc--------hHHHHHHHHHHHhcchh-----------hhHhhHHHHHhhhhhhH
Confidence 347778899999999999999998642 34444445555555554 455666888876543
Q ss_pred ----hhhcCccchHHHHHHHHHHHHcCChHHHHHHHHHHhhcCC------CChHHHHHHHHHHHHcCC
Q 012143 158 ----SMQSDTRQAVVWNTLGLILLKSGRLQSSISVLSSLLAVDP------NNCDCIGNLGIAYFQSGD 215 (470)
Q Consensus 158 ----~~~~~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~------~~~~~~~~la~~~~~~g~ 215 (470)
.+...-..+.+.-++|.++-..|.|++|+.+..+-+.+.. ....+++++|.+|...|+
T Consensus 83 tlar~lgdklGEAKssgNLGNtlKv~G~fdeA~~cc~rhLd~areLgDrv~e~RAlYNlgnvYhakGk 150 (639)
T KOG1130|consen 83 TLARLLGDKLGEAKSSGNLGNTLKVKGAFDEALTCCFRHLDFARELGDRVLESRALYNLGNVYHAKGK 150 (639)
T ss_pred HHHHHhcchhccccccccccchhhhhcccchHHHHHHHHhHHHHHHhHHHhhhHHHhhhhhhhhhccc
Confidence 2222233455667889999999999999998888766532 235688899999887765
|
|
| >KOG4340 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=99.59 E-value=4.1e-11 Score=98.22 Aligned_cols=378 Identities=14% Similarity=0.080 Sum_probs=228.9
Q ss_pred hhhhhhhHHHHHHHHHHHHhcCCCCcchhhhcccchhhhhcChhhHHHHHHHHHHhCCCChhHHHHHHHHHHHhCChhHH
Q 012143 15 INKLGKCRSRISSKMDSALEFGVDADGDQSGLGTSSSSREEKVSSLKTGLVHVARKMPKNAHAHFLLGLMYQRLGQPLKA 94 (470)
Q Consensus 15 ~~~~g~~~~a~~~~~~~~l~~~p~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~l~~~~~~~g~~~~A 94 (470)
+.+-.++..+| ..+..-.+.+|.+..+...+|.+ +....++..|-.+|++.-...|......+..+..+++.+.+..|
T Consensus 20 lI~d~ry~DaI-~~l~s~~Er~p~~rAgLSlLgyC-YY~~Q~f~~AA~CYeQL~ql~P~~~qYrlY~AQSLY~A~i~ADA 97 (459)
T KOG4340|consen 20 LIRDARYADAI-QLLGSELERSPRSRAGLSLLGYC-YYRLQEFALAAECYEQLGQLHPELEQYRLYQAQSLYKACIYADA 97 (459)
T ss_pred HHHHhhHHHHH-HHHHHHHhcCccchHHHHHHHHH-HHHHHHHHHHHHHHHHHHhhChHHHHHHHHHHHHHHHhcccHHH
Confidence 46777889999 89999999999999999999999 99999999999999999999999999889999999999999999
Q ss_pred HHHHHHHHHHHhhh-hc-----------ccchhhhHHHHHHhh--hccccccccCCCccccccCcccHHHHHHHHHHhhh
Q 012143 95 VSSYEKAEEILLRC-EA-----------DIARPELLSLVQIHH--AQCLLPESSGDNSLDKELEPEELEEILSKLKESMQ 160 (470)
Q Consensus 95 ~~~~~~al~~~~~~-~~-----------~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~ 160 (470)
+.......+. |.- +. ....++...+..-.. +-+......|-. .++.|+++.|++-|+.+++
T Consensus 98 LrV~~~~~D~-~~L~~~~lqLqaAIkYse~Dl~g~rsLveQlp~en~Ad~~in~gCl----lykegqyEaAvqkFqaAlq 172 (459)
T KOG4340|consen 98 LRVAFLLLDN-PALHSRVLQLQAAIKYSEGDLPGSRSLVEQLPSENEADGQINLGCL----LYKEGQYEAAVQKFQAALQ 172 (459)
T ss_pred HHHHHHhcCC-HHHHHHHHHHHHHHhcccccCcchHHHHHhccCCCccchhccchhe----eeccccHHHHHHHHHHHHh
Confidence 9887765542 100 00 000111111111111 122222333333 5677777888888888888
Q ss_pred cCccchHHHHHHHHHHHHcCChHHHHHHHHHHhhc----CCCC-------------------------hHHHHHHHHHHH
Q 012143 161 SDTRQAVVWNTLGLILLKSGRLQSSISVLSSLLAV----DPNN-------------------------CDCIGNLGIAYF 211 (470)
Q Consensus 161 ~~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~----~~~~-------------------------~~~~~~la~~~~ 211 (470)
....++..-++++.++++.|++..|+++..+.++. .|.. ..++...+.+++
T Consensus 173 vsGyqpllAYniALaHy~~~qyasALk~iSEIieRG~r~HPElgIGm~tegiDvrsvgNt~~lh~Sal~eAfNLKaAIey 252 (459)
T KOG4340|consen 173 VSGYQPLLAYNLALAHYSSRQYASALKHISEIIERGIRQHPELGIGMTTEGIDVRSVGNTLVLHQSALVEAFNLKAAIEY 252 (459)
T ss_pred hcCCCchhHHHHHHHHHhhhhHHHHHHHHHHHHHhhhhcCCccCccceeccCchhcccchHHHHHHHHHHHhhhhhhhhh
Confidence 77777777778888888888888888777666553 3321 124555566777
Q ss_pred HcCCHHHHHHHHHHHHhhC--CCChHHHHHHHHHHHhhhcccccccccchhhhhHHHhcCCHHHHHHHHHHHHhcCCCCH
Q 012143 212 QSGDMEQSAKCFQDLILKD--QNHPAALINYAALLLCKYGSVLAGAGANTGEGACLDQASAVNVAKECLLAALKADPKAA 289 (470)
Q Consensus 212 ~~g~~~~A~~~~~~~l~~~--p~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~p~~~ 289 (470)
+.|+++.|.+.+...--.. .-+|..+.+++..- ..+++.+...-+.-.+.++|--+
T Consensus 253 q~~n~eAA~eaLtDmPPRaE~elDPvTLHN~Al~n----------------------~~~~p~~g~~KLqFLL~~nPfP~ 310 (459)
T KOG4340|consen 253 QLRNYEAAQEALTDMPPRAEEELDPVTLHNQALMN----------------------MDARPTEGFEKLQFLLQQNPFPP 310 (459)
T ss_pred hcccHHHHHHHhhcCCCcccccCCchhhhHHHHhc----------------------ccCCccccHHHHHHHHhcCCCCh
Confidence 7777777766654432111 12344455555443 25666666666667777777666
Q ss_pred HHHHHHHHHHHHcCChhHHHHHHHHHHhcCCCcccHHHHHHHHHHHHhhhccCchHHhhhhHHHHHHHhhcCCCCCCCcH
Q 012143 290 HIWANLANAYYLTGDHRSSGKCLEKAAKLEPNCMSTRYAVAVSRIKDAERSQEPTEQLSWAGNEMASILREGDPVQIEPP 369 (470)
Q Consensus 290 ~~~~~la~~~~~~g~~~~A~~~~~~a~~~~p~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 369 (470)
+..-++-.+|.+..-++-|...+ ..+|+...-...--...+.
T Consensus 311 ETFANlLllyCKNeyf~lAADvL----AEn~~lTyk~L~~Yly~LL---------------------------------- 352 (459)
T KOG4340|consen 311 ETFANLLLLYCKNEYFDLAADVL----AENAHLTYKFLTPYLYDLL---------------------------------- 352 (459)
T ss_pred HHHHHHHHHHhhhHHHhHHHHHH----hhCcchhHHHhhHHHHHHH----------------------------------
Confidence 77777777777766666665443 3334322111110000010
Q ss_pred HHHHHHHHHHhccccHHHHHHHHHHHhcchhhh-----hHhhHHHHHHHhccHHHHHHHHHHHHhcCCCcHHHHHHHHHH
Q 012143 370 IAWAGFAAVQKTHHEVAAAFETEENELSKMEEC-----AGAGESAFLDQASAVNVAKECLLAALKADPKAAHIWANLANA 444 (470)
Q Consensus 370 ~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~-----~~~~l~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~ 444 (470)
-.+-..+-..++|.+-+.......... +.......-.......+|++.|++++++ ...+....+++
T Consensus 353 ------daLIt~qT~pEea~KKL~~La~~l~~kLRklAi~vQe~r~~~dd~a~R~ai~~Yd~~LE~---YLPVlMa~Aki 423 (459)
T KOG4340|consen 353 ------DALITCQTAPEEAFKKLDGLAGMLTEKLRKLAIQVQEARHNRDDEAIRKAVNEYDETLEK---YLPVLMAQAKI 423 (459)
T ss_pred ------HHHHhCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHH---HHHHHHHHHHh
Confidence 000111111222221111100000000 0000000000111245677777777775 34577889999
Q ss_pred HHHcCChHHHHHHHHHHHHhhccC
Q 012143 445 YYLTGDHRSSGKCLEKVLMVYCSS 468 (470)
Q Consensus 445 ~~~~g~~~~A~~~~~~al~~~~~~ 468 (470)
|....++..+.+.|++..+.....
T Consensus 424 yW~~~Dy~~vEk~Fr~SvefC~eh 447 (459)
T KOG4340|consen 424 YWNLEDYPMVEKIFRKSVEFCNDH 447 (459)
T ss_pred hccccccHHHHHHHHHHHhhhccc
Confidence 999999999999999999876543
|
|
| >PRK04841 transcriptional regulator MalT; Provisional | Back alignment and domain information |
|---|
Probab=99.58 E-value=9.7e-12 Score=128.01 Aligned_cols=347 Identities=13% Similarity=0.041 Sum_probs=220.7
Q ss_pred cccchhhhhcChhhHHHHHHHHHH-hCCCChhHHHHHHHHHHHhCChhHHHHHHHHHHHHHhhhhcccchhhhHHHHHHh
Q 012143 46 LGTSSSSREEKVSSLKTGLVHVAR-KMPKNAHAHFLLGLMYQRLGQPLKAVSSYEKAEEILLRCEADIARPELLSLVQIH 124 (470)
Q Consensus 46 ~~~~~~~~~~~~~~A~~~~~~~l~-~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~ 124 (470)
.+.. ....|++..+...+..+-. ....++.....++.++...|++++|...+..+....+..... ..+... ..+.
T Consensus 380 ~a~~-l~~~g~~~~l~~~l~~lp~~~~~~~~~l~~~~a~~~~~~g~~~~a~~~l~~a~~~~~~~~~~-~~~~~~--~~~~ 455 (903)
T PRK04841 380 HGWS-LFNQGELSLLEECLNALPWEVLLENPRLVLLQAWLAQSQHRYSEVNTLLARAEQELKDRNIE-LDGTLQ--AEFN 455 (903)
T ss_pred hHHH-HHhcCChHHHHHHHHhCCHHHHhcCcchHHHHHHHHHHCCCHHHHHHHHHHHHHhccccCcc-cchhHH--HHHH
Confidence 4444 5566777776666654311 122345566788999999999999999999987653321100 001111 1111
Q ss_pred hhccccccccCCCccccccCcccHHHHHHHHHHhhhcCccc-----hHHHHHHHHHHHHcCChHHHHHHHHHHhhcCCCC
Q 012143 125 HAQCLLPESSGDNSLDKELEPEELEEILSKLKESMQSDTRQ-----AVVWNTLGLILLKSGRLQSSISVLSSLLAVDPNN 199 (470)
Q Consensus 125 ~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~p~~-----~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~ 199 (470)
...+.+ +...|++++|...+++++...|.. ..+...+|.++...|++++|...+++++......
T Consensus 456 ~~~a~~-----------~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~a~~~lg~~~~~~G~~~~A~~~~~~al~~~~~~ 524 (903)
T PRK04841 456 ALRAQV-----------AINDGDPEEAERLAELALAELPLTWYYSRIVATSVLGEVHHCKGELARALAMMQQTEQMARQH 524 (903)
T ss_pred HHHHHH-----------HHhCCCHHHHHHHHHHHHhcCCCccHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhhh
Confidence 122222 345678899999999998754432 2356678999999999999999999998763321
Q ss_pred ------hHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCC-----h---HHHHHHHHHHHhhhcccccccccchhhhhHH
Q 012143 200 ------CDCIGNLGIAYFQSGDMEQSAKCFQDLILKDQNH-----P---AALINYAALLLCKYGSVLAGAGANTGEGACL 265 (470)
Q Consensus 200 ------~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~-----~---~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~ 265 (470)
..++..+|.++...|++++|...+++++...... + ..+..+ |.++
T Consensus 525 g~~~~~~~~~~~la~~~~~~G~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~l---------------------a~~~ 583 (903)
T PRK04841 525 DVYHYALWSLLQQSEILFAQGFLQAAYETQEKAFQLIEEQHLEQLPMHEFLLRIR---------------------AQLL 583 (903)
T ss_pred cchHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHhccccccHHHHHHHHH---------------------HHHH
Confidence 2466788999999999999999999998753221 1 112222 4444
Q ss_pred HhcCCHHHHHHHHHHHHhcCCC-----CHHHHHHHHHHHHHcCChhHHHHHHHHHHhcCCCcccHHHHHHHHHHHHhhhc
Q 012143 266 DQASAVNVAKECLLAALKADPK-----AAHIWANLANAYYLTGDHRSSGKCLEKAAKLEPNCMSTRYAVAVSRIKDAERS 340 (470)
Q Consensus 266 ~~~~~~~~A~~~~~~~~~~~p~-----~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~p~~~~~~~~l~~~~~~~~~~~ 340 (470)
...|++++|...+.+++..... ....+..+|.++...|++++|...+.++..+.+...........
T Consensus 584 ~~~G~~~~A~~~~~~al~~~~~~~~~~~~~~~~~la~~~~~~G~~~~A~~~l~~a~~~~~~~~~~~~~~~~--------- 654 (903)
T PRK04841 584 WEWARLDEAEQCARKGLEVLSNYQPQQQLQCLAMLAKISLARGDLDNARRYLNRLENLLGNGRYHSDWIAN--------- 654 (903)
T ss_pred HHhcCHHHHHHHHHHhHHhhhccCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhcccccHhHhhH---------
Confidence 5789999999999999875332 34566778999999999999999999997764432110000000
Q ss_pred cCchHHhhhhHHHHHHHhhcCCCCCCCcHHHHHHHHHHHhccccHHHHHHHHHHHhcchhh------hhHhhHHHHHHHh
Q 012143 341 QEPTEQLSWAGNEMASILREGDPVQIEPPIAWAGFAAVQKTHHEVAAAFETEENELSKMEE------CAGAGESAFLDQA 414 (470)
Q Consensus 341 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~------~~~~~l~~~~~~~ 414 (470)
........+...|+.+.|.........+... ..+..++.++...
T Consensus 655 ------------------------------~~~~~~~~~~~~g~~~~A~~~l~~~~~~~~~~~~~~~~~~~~~a~~~~~~ 704 (903)
T PRK04841 655 ------------------------------ADKVRLIYWQMTGDKEAAANWLRQAPKPEFANNHFLQGQWRNIARAQILL 704 (903)
T ss_pred ------------------------------HHHHHHHHHHHCCCHHHHHHHHHhcCCCCCccchhHHHHHHHHHHHHHHc
Confidence 0000011222244555555544442221111 1134566677777
Q ss_pred ccHHHHHHHHHHHHhcCC------CcHHHHHHHHHHHHHcCChHHHHHHHHHHHHhhcc
Q 012143 415 SAVNVAKECLLAALKADP------KAAHIWANLANAYYLTGDHRSSGKCLEKVLMVYCS 467 (470)
Q Consensus 415 ~~~~~A~~~~~~al~~~p------~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~ 467 (470)
|++++|+..+++++.... ....++..+|.++...|+.++|...+.+++++...
T Consensus 705 g~~~~A~~~l~~al~~~~~~g~~~~~a~~~~~la~a~~~~G~~~~A~~~L~~Al~la~~ 763 (903)
T PRK04841 705 GQFDEAEIILEELNENARSLRLMSDLNRNLILLNQLYWQQGRKSEAQRVLLEALKLANR 763 (903)
T ss_pred CCHHHHHHHHHHHHHHHHHhCchHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhCc
Confidence 777778777777776421 22456677788888888888888888888877644
|
|
| >TIGR02552 LcrH_SycD type III secretion low calcium response chaperone LcrH/SycD | Back alignment and domain information |
|---|
Probab=99.58 E-value=7.7e-14 Score=107.88 Aligned_cols=117 Identities=21% Similarity=0.227 Sum_probs=85.2
Q ss_pred HHHHHHhhcCCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCChHHHHHHHHHHHhhhcccccccccchhhhhHHH
Q 012143 187 SVLSSLLAVDPNNCDCIGNLGIAYFQSGDMEQSAKCFQDLILKDQNHPAALINYAALLLCKYGSVLAGAGANTGEGACLD 266 (470)
Q Consensus 187 ~~~~~a~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~ 266 (470)
..|++++..+|++..+.+.+|.++...|++++|+..+++++..+|.++..+..+|.++.
T Consensus 4 ~~~~~~l~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~la~~~~--------------------- 62 (135)
T TIGR02552 4 ATLKDLLGLDSEQLEQIYALAYNLYQQGRYDEALKLFQLLAAYDPYNSRYWLGLAACCQ--------------------- 62 (135)
T ss_pred hhHHHHHcCChhhHHHHHHHHHHHHHcccHHHHHHHHHHHHHhCCCcHHHHHHHHHHHH---------------------
Confidence 35666777777777777777777777777777777777777777777777777666665
Q ss_pred hcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCChhHHHHHHHHHHhcCCCccc
Q 012143 267 QASAVNVAKECLLAALKADPKAAHIWANLANAYYLTGDHRSSGKCLEKAAKLEPNCMS 324 (470)
Q Consensus 267 ~~~~~~~A~~~~~~~~~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~p~~~~ 324 (470)
..|++++|+.++++++..+|+++..++.+|.++...|++++|+..|+++++.+|++..
T Consensus 63 ~~~~~~~A~~~~~~~~~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~ 120 (135)
T TIGR02552 63 MLKEYEEAIDAYALAAALDPDDPRPYFHAAECLLALGEPESALKALDLAIEICGENPE 120 (135)
T ss_pred HHHHHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhccccch
Confidence 5677777777777777777777777777777777777777777777777777776654
|
ScyD/LcrH contains three central tetratricopeptide-like repeats that are predicted to fold into an all-alpha-helical array. |
| >TIGR02552 LcrH_SycD type III secretion low calcium response chaperone LcrH/SycD | Back alignment and domain information |
|---|
Probab=99.58 E-value=9.9e-14 Score=107.28 Aligned_cols=119 Identities=19% Similarity=0.198 Sum_probs=112.4
Q ss_pred HHHHHhhhcCccchHHHHHHHHHHHHcCChHHHHHHHHHHhhcCCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCC
Q 012143 153 SKLKESMQSDTRQAVVWNTLGLILLKSGRLQSSISVLSSLLAVDPNNCDCIGNLGIAYFQSGDMEQSAKCFQDLILKDQN 232 (470)
Q Consensus 153 ~~~~~~~~~~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~ 232 (470)
..+++++..+|++..+.+.+|.++...|++++|+..+++++..+|.++.++..+|.++...|++++|+..+++++..+|.
T Consensus 4 ~~~~~~l~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~p~ 83 (135)
T TIGR02552 4 ATLKDLLGLDSEQLEQIYALAYNLYQQGRYDEALKLFQLLAAYDPYNSRYWLGLAACCQMLKEYEEAIDAYALAAALDPD 83 (135)
T ss_pred hhHHHHHcCChhhHHHHHHHHHHHHHcccHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCC
Confidence 46788999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ChHHHHHHHHHHHhhhcccccccccchhhhhHHHhcCCHHHHHHHHHHHHhcCCCCHHHH
Q 012143 233 HPAALINYAALLLCKYGSVLAGAGANTGEGACLDQASAVNVAKECLLAALKADPKAAHIW 292 (470)
Q Consensus 233 ~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~ 292 (470)
++..++.+|.++. ..|++++|+..|+++++.+|++....
T Consensus 84 ~~~~~~~la~~~~---------------------~~g~~~~A~~~~~~al~~~p~~~~~~ 122 (135)
T TIGR02552 84 DPRPYFHAAECLL---------------------ALGEPESALKALDLAIEICGENPEYS 122 (135)
T ss_pred ChHHHHHHHHHHH---------------------HcCCHHHHHHHHHHHHHhccccchHH
Confidence 9999999998887 79999999999999999999876644
|
ScyD/LcrH contains three central tetratricopeptide-like repeats that are predicted to fold into an all-alpha-helical array. |
| >PF12569 NARP1: NMDA receptor-regulated protein 1 ; InterPro: IPR021183 This group represents N-terminal acetyltransferase A (NatA) auxiliary subunit and represents a non-catalytic component of the NatA N-terminal acetyltransferase, which catalyzes acetylation of proteins beginning with Met-Ser, Met-Gly and Met-Ala | Back alignment and domain information |
|---|
Probab=99.57 E-value=5.6e-12 Score=116.65 Aligned_cols=245 Identities=12% Similarity=0.066 Sum_probs=162.8
Q ss_pred chhhhcccchhhhhcChhhHHHHHHHHHHhCCCChhHHHHHHHHHHHhCChhHHHHHHHHHHHHHhhhhcccchhhhHHH
Q 012143 41 GDQSGLGTSSSSREEKVSSLKTGLVHVARKMPKNAHAHFLLGLMYQRLGQPLKAVSSYEKAEEILLRCEADIARPELLSL 120 (470)
Q Consensus 41 ~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~ 120 (470)
+.......+ +...|++++|.+.+.+....-++....+-..|.++...|++++|...|+..++.+|++.. +
T Consensus 5 E~lLY~~~i-l~e~g~~~~AL~~L~~~~~~I~Dk~~~~E~rA~ll~kLg~~~eA~~~y~~Li~rNPdn~~------Y--- 74 (517)
T PF12569_consen 5 ELLLYKNSI-LEEAGDYEEALEHLEKNEKQILDKLAVLEKRAELLLKLGRKEEAEKIYRELIDRNPDNYD------Y--- 74 (517)
T ss_pred HHHHHHHHH-HHHCCCHHHHHHHHHhhhhhCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCcHH------H---
Confidence 344556666 888999999999999988888999999999999999999999999999999999887521 1
Q ss_pred HHHhhhccccccccCCCccccccCcccHHHHHHHHHHhhhcCccchHHHHHHHHHHHHcCChHH-HHHHHHHHhhcCCCC
Q 012143 121 VQIHHAQCLLPESSGDNSLDKELEPEELEEILSKLKESMQSDTRQAVVWNTLGLILLKSGRLQS-SISVLSSLLAVDPNN 199 (470)
Q Consensus 121 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~~~~~~-A~~~~~~a~~~~~~~ 199 (470)
+..+..+...... ....+.+.-..+|++.....|....+. .+...+..-..+.. +..++...+. ..-
T Consensus 75 ---y~~L~~~~g~~~~------~~~~~~~~~~~~y~~l~~~yp~s~~~~-rl~L~~~~g~~F~~~~~~yl~~~l~--Kgv 142 (517)
T PF12569_consen 75 ---YRGLEEALGLQLQ------LSDEDVEKLLELYDELAEKYPRSDAPR-RLPLDFLEGDEFKERLDEYLRPQLR--KGV 142 (517)
T ss_pred ---HHHHHHHHhhhcc------cccccHHHHHHHHHHHHHhCccccchh-HhhcccCCHHHHHHHHHHHHHHHHh--cCC
Confidence 1111111100000 122356777888888888887643322 22222222223333 3334444443 345
Q ss_pred hHHHHHHHHHHHHcCCHHHHHHHHHHHHhh---C----C-----CChHHHHHHHHHHHhhhcccccccccchhhhhHHHh
Q 012143 200 CDCIGNLGIAYFQSGDMEQSAKCFQDLILK---D----Q-----NHPAALINYAALLLCKYGSVLAGAGANTGEGACLDQ 267 (470)
Q Consensus 200 ~~~~~~la~~~~~~g~~~~A~~~~~~~l~~---~----p-----~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~ 267 (470)
|..+..+-.+|....+..-....+...... . + ..++........ .++..|..
T Consensus 143 PslF~~lk~Ly~d~~K~~~i~~l~~~~~~~l~~~~~~~~~~~~~~~~p~~~lw~~~----------------~lAqhyd~ 206 (517)
T PF12569_consen 143 PSLFSNLKPLYKDPEKAAIIESLVEEYVNSLESNGSFSNGDDEEKEPPSTLLWTLY----------------FLAQHYDY 206 (517)
T ss_pred chHHHHHHHHHcChhHHHHHHHHHHHHHHhhcccCCCCCccccccCCchHHHHHHH----------------HHHHHHHH
Confidence 666667766666444333333333332211 0 0 011111111111 13566668
Q ss_pred cCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCChhHHHHHHHHHHhcCCCcc
Q 012143 268 ASAVNVAKECLLAALKADPKAAHIWANLANAYYLTGDHRSSGKCLEKAAKLEPNCM 323 (470)
Q Consensus 268 ~~~~~~A~~~~~~~~~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~p~~~ 323 (470)
.|++++|+++++++|+..|..++.+...|.++-..|++.+|...++.+..+++.+-
T Consensus 207 ~g~~~~Al~~Id~aI~htPt~~ely~~KarilKh~G~~~~Aa~~~~~Ar~LD~~DR 262 (517)
T PF12569_consen 207 LGDYEKALEYIDKAIEHTPTLVELYMTKARILKHAGDLKEAAEAMDEARELDLADR 262 (517)
T ss_pred hCCHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHhCChhhH
Confidence 99999999999999999999999999999999999999999999999999998753
|
N-terminal acetylation plays a role in normal eukaryotic translation and processing, protect against proteolytic degradation and protein turnover. NAT1 anchors ARD1 and NAT5 to the ribosome and may present the N- terminal of nascent polypeptides for acetylation [], []. |
| >KOG0553 consensus TPR repeat-containing protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.54 E-value=3.5e-14 Score=116.60 Aligned_cols=104 Identities=20% Similarity=0.347 Sum_probs=99.2
Q ss_pred ccCcccHHHHHHHHHHhhhcCccchHHHHHHHHHHHHcCChHHHHHHHHHHhhcCCCChHHHHHHHHHHHHcCCHHHHHH
Q 012143 142 ELEPEELEEILSKLKESMQSDTRQAVVWNTLGLILLKSGRLQSSISVLSSLLAVDPNNCDCIGNLGIAYFQSGDMEQSAK 221 (470)
Q Consensus 142 ~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~la~~~~~~g~~~~A~~ 221 (470)
+++.++|.+|+..|.++|.++|.++..|.+++.+|.++|.++.|++.++.++.++|....+|..||.+|..+|++.+|++
T Consensus 91 ~m~~~~Y~eAv~kY~~AI~l~P~nAVyycNRAAAy~~Lg~~~~AVkDce~Al~iDp~yskay~RLG~A~~~~gk~~~A~~ 170 (304)
T KOG0553|consen 91 LMKNKDYQEAVDKYTEAIELDPTNAVYYCNRAAAYSKLGEYEDAVKDCESALSIDPHYSKAYGRLGLAYLALGKYEEAIE 170 (304)
T ss_pred HHHhhhHHHHHHHHHHHHhcCCCcchHHHHHHHHHHHhcchHHHHHHHHHHHhcChHHHHHHHHHHHHHHccCcHHHHHH
Confidence 67899999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHhhCCCChHHHHHHHHHHH
Q 012143 222 CFQDLILKDQNHPAALINYAALLL 245 (470)
Q Consensus 222 ~~~~~l~~~p~~~~~~~~l~~~~~ 245 (470)
.|+++++++|++...+..|..+-.
T Consensus 171 aykKaLeldP~Ne~~K~nL~~Ae~ 194 (304)
T KOG0553|consen 171 AYKKALELDPDNESYKSNLKIAEQ 194 (304)
T ss_pred HHHhhhccCCCcHHHHHHHHHHHH
Confidence 999999999999987777766554
|
|
| >PRK15179 Vi polysaccharide biosynthesis protein TviE; Provisional | Back alignment and domain information |
|---|
Probab=99.53 E-value=1.3e-12 Score=125.38 Aligned_cols=146 Identities=7% Similarity=-0.005 Sum_probs=111.9
Q ss_pred HHhCCCChhHHHHHHHHHHHhCChhHHHHHHHHHHHHHhhhhcccchhhhHHHHHHhhhccccccccCCCccccccCccc
Q 012143 68 ARKMPKNAHAHFLLGLMYQRLGQPLKAVSSYEKAEEILLRCEADIARPELLSLVQIHHAQCLLPESSGDNSLDKELEPEE 147 (470)
Q Consensus 68 l~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 147 (470)
....|+++++++.||.+....|.+++|...++.++++.|+.. .++..++.++ .+.++
T Consensus 79 ~~~~~~~~~~~~~La~i~~~~g~~~ea~~~l~~~~~~~Pd~~------------~a~~~~a~~L-----------~~~~~ 135 (694)
T PRK15179 79 VRRYPHTELFQVLVARALEAAHRSDEGLAVWRGIHQRFPDSS------------EAFILMLRGV-----------KRQQG 135 (694)
T ss_pred HHhccccHHHHHHHHHHHHHcCCcHHHHHHHHHHHhhCCCcH------------HHHHHHHHHH-----------HHhcc
Confidence 345788899999999999999999999999999998876642 2223333332 35566
Q ss_pred HHHHHHHHHHhhhcCccchHHHHHHHHHHHHcCChHHHHHHHHHHhhcCCCChHHHHHHHHHHHHcCCHHHHHHHHHHHH
Q 012143 148 LEEILSKLKESMQSDTRQAVVWNTLGLILLKSGRLQSSISVLSSLLAVDPNNCDCIGNLGIAYFQSGDMEQSAKCFQDLI 227 (470)
Q Consensus 148 ~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~l 227 (470)
+++|+..+++++..+|+++.+++.+|.++...|++++|+.+|++++..+|+++.++..+|.++...|+.++|...|++++
T Consensus 136 ~eeA~~~~~~~l~~~p~~~~~~~~~a~~l~~~g~~~~A~~~y~~~~~~~p~~~~~~~~~a~~l~~~G~~~~A~~~~~~a~ 215 (694)
T PRK15179 136 IEAGRAEIELYFSGGSSSAREILLEAKSWDEIGQSEQADACFERLSRQHPEFENGYVGWAQSLTRRGALWRARDVLQAGL 215 (694)
T ss_pred HHHHHHHHHHHhhcCCCCHHHHHHHHHHHHHhcchHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 68888888888888888888888888888888888888888888888778888888888888888888888888888888
Q ss_pred hhCCCChHH
Q 012143 228 LKDQNHPAA 236 (470)
Q Consensus 228 ~~~p~~~~~ 236 (470)
....+-...
T Consensus 216 ~~~~~~~~~ 224 (694)
T PRK15179 216 DAIGDGARK 224 (694)
T ss_pred HhhCcchHH
Confidence 766554443
|
|
| >KOG0553 consensus TPR repeat-containing protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.51 E-value=4e-13 Score=110.50 Aligned_cols=120 Identities=22% Similarity=0.207 Sum_probs=104.6
Q ss_pred hHHHHHHHHHHHHcCChHHHHHHHHHHhhcCCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCChHHHHHHHHHHH
Q 012143 166 AVVWNTLGLILLKSGRLQSSISVLSSLLAVDPNNCDCIGNLGIAYFQSGDMEQSAKCFQDLILKDQNHPAALINYAALLL 245 (470)
Q Consensus 166 ~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~l~~~~~ 245 (470)
++-+..-|.-++..++|.+|+..|.+||+++|.++..|.+.+.+|.++|.++.|++..+.++.++|....+|..+|.++.
T Consensus 81 AE~LK~eGN~~m~~~~Y~eAv~kY~~AI~l~P~nAVyycNRAAAy~~Lg~~~~AVkDce~Al~iDp~yskay~RLG~A~~ 160 (304)
T KOG0553|consen 81 AESLKNEGNKLMKNKDYQEAVDKYTEAIELDPTNAVYYCNRAAAYSKLGEYEDAVKDCESALSIDPHYSKAYGRLGLAYL 160 (304)
T ss_pred HHHHHHHHHHHHHhhhHHHHHHHHHHHHhcCCCcchHHHHHHHHHHHhcchHHHHHHHHHHHhcChHHHHHHHHHHHHHH
Confidence 34456678888888999999999999999999999999999999999999999999999999999999999999888888
Q ss_pred hhhcccccccccchhhhhHHHhcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCChh
Q 012143 246 CKYGSVLAGAGANTGEGACLDQASAVNVAKECLLAALKADPKAAHIWANLANAYYLTGDHR 306 (470)
Q Consensus 246 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~la~~~~~~g~~~ 306 (470)
..|++++|++.|+++++++|++...+.+|..+-..++...
T Consensus 161 ---------------------~~gk~~~A~~aykKaLeldP~Ne~~K~nL~~Ae~~l~e~~ 200 (304)
T KOG0553|consen 161 ---------------------ALGKYEEAIEAYKKALELDPDNESYKSNLKIAEQKLNEPK 200 (304)
T ss_pred ---------------------ccCcHHHHHHHHHhhhccCCCcHHHHHHHHHHHHHhcCCC
Confidence 5889999999999999999999888888888777777665
|
|
| >COG3071 HemY Uncharacterized enzyme of heme biosynthesis [Coenzyme metabolism] | Back alignment and domain information |
|---|
Probab=99.51 E-value=1.3e-10 Score=99.45 Aligned_cols=272 Identities=16% Similarity=0.061 Sum_probs=202.2
Q ss_pred HHHHHHHHHHHcCChHHHHHHHHHHhhcCCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCh-HHHHHHHHHHHh
Q 012143 168 VWNTLGLILLKSGRLQSSISVLSSLLAVDPNNCDCIGNLGIAYFQSGDMEQSAKCFQDLILKDQNHP-AALINYAALLLC 246 (470)
Q Consensus 168 ~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~-~~~~~l~~~~~~ 246 (470)
....-|..-+..|+|.+|.+...+.-+..+....++..-+....++|+++.|-.++.++-+..+++. ......+.++.
T Consensus 86 ~~~~egl~~l~eG~~~qAEkl~~rnae~~e~p~l~~l~aA~AA~qrgd~~~an~yL~eaae~~~~~~l~v~ltrarlll- 164 (400)
T COG3071 86 KALNEGLLKLFEGDFQQAEKLLRRNAEHGEQPVLAYLLAAEAAQQRGDEDRANRYLAEAAELAGDDTLAVELTRARLLL- 164 (400)
T ss_pred HHHHHHHHHHhcCcHHHHHHHHHHhhhcCcchHHHHHHHHHHHHhcccHHHHHHHHHHHhccCCCchHHHHHHHHHHHH-
Confidence 3444566677789999999999998888888777888888999999999999999999998854433 33444455554
Q ss_pred hhcccccccccchhhhhHHHhcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCChhHHHHHHHHHHhcCCCcccHH
Q 012143 247 KYGSVLAGAGANTGEGACLDQASAVNVAKECLLAALKADPKAAHIWANLANAYYLTGDHRSSGKCLEKAAKLEPNCMSTR 326 (470)
Q Consensus 247 ~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~p~~~~~~ 326 (470)
..|+++.|..-..++++..|.++.+......+|...|++.+....+.+.-+..--+..-.
T Consensus 165 --------------------~~~d~~aA~~~v~~ll~~~pr~~~vlrLa~r~y~~~g~~~~ll~~l~~L~ka~~l~~~e~ 224 (400)
T COG3071 165 --------------------NRRDYPAARENVDQLLEMTPRHPEVLRLALRAYIRLGAWQALLAILPKLRKAGLLSDEEA 224 (400)
T ss_pred --------------------hCCCchhHHHHHHHHHHhCcCChHHHHHHHHHHHHhccHHHHHHHHHHHHHccCCChHHH
Confidence 799999999999999999999999999999999999999999998888776543322211
Q ss_pred H---HHHHHHHHHhhhccCchHHhhhhHHHHHHHhhcCCCCCCCcHHHHHHHHHHHhccccHHHHHHHHHHHhcchhhhh
Q 012143 327 Y---AVAVSRIKDAERSQEPTEQLSWAGNEMASILREGDPVQIEPPIAWAGFAAVQKTHHEVAAAFETEENELSKMEECA 403 (470)
Q Consensus 327 ~---~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~ 403 (470)
. ..+...+-+........+.+. ............+|.+-..++.-+...|+.++|.+.....++......
T Consensus 225 ~~le~~a~~glL~q~~~~~~~~gL~-------~~W~~~pr~lr~~p~l~~~~a~~li~l~~~~~A~~~i~~~Lk~~~D~~ 297 (400)
T COG3071 225 ARLEQQAWEGLLQQARDDNGSEGLK-------TWWKNQPRKLRNDPELVVAYAERLIRLGDHDEAQEIIEDALKRQWDPR 297 (400)
T ss_pred HHHHHHHHHHHHHHHhccccchHHH-------HHHHhccHHhhcChhHHHHHHHHHHHcCChHHHHHHHHHHHHhccChh
Confidence 1 222221111111121122211 122222222224567888899999999999999999998877443333
Q ss_pred HhhHHHHHHHhccHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHcCChHHHHHHHHHHHHhhccC
Q 012143 404 GAGESAFLDQASAVNVAKECLLAALKADPKAAHIWANLANAYYLTGDHRSSGKCLEKVLMVYCSS 468 (470)
Q Consensus 404 ~~~l~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~ 468 (470)
...+ .-...-++...=++..++.+...|++|..+..||.++.+.+.|.+|..+|+.+++.-++.
T Consensus 298 L~~~-~~~l~~~d~~~l~k~~e~~l~~h~~~p~L~~tLG~L~~k~~~w~kA~~~leaAl~~~~s~ 361 (400)
T COG3071 298 LCRL-IPRLRPGDPEPLIKAAEKWLKQHPEDPLLLSTLGRLALKNKLWGKASEALEAALKLRPSA 361 (400)
T ss_pred HHHH-HhhcCCCCchHHHHHHHHHHHhCCCChhHHHHHHHHHHHhhHHHHHHHHHHHHHhcCCCh
Confidence 2211 123466788899999999999999999999999999999999999999999999887664
|
|
| >KOG1128 consensus Uncharacterized conserved protein, contains TPR repeats [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.50 E-value=4.5e-12 Score=115.96 Aligned_cols=219 Identities=18% Similarity=0.091 Sum_probs=181.7
Q ss_pred chhhhcccchhhhhcChhhHHHHHHHHHHhCCCChhHHHHHHHHHHHhCChhHHHHHHHHHHHHHhhhhcccchhhhHHH
Q 012143 41 GDQSGLGTSSSSREEKVSSLKTGLVHVARKMPKNAHAHFLLGLMYQRLGQPLKAVSSYEKAEEILLRCEADIARPELLSL 120 (470)
Q Consensus 41 ~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~ 120 (470)
.....++.. +...|-...|...+++ +..|-....||...|+..+|.....+-++.+|++
T Consensus 399 q~q~~lael-l~slGitksAl~I~Er--------lemw~~vi~CY~~lg~~~kaeei~~q~lek~~d~------------ 457 (777)
T KOG1128|consen 399 QLQRLLAEL-LLSLGITKSALVIFER--------LEMWDPVILCYLLLGQHGKAEEINRQELEKDPDP------------ 457 (777)
T ss_pred hHHHHHHHH-HHHcchHHHHHHHHHh--------HHHHHHHHHHHHHhcccchHHHHHHHHhcCCCcc------------
Confidence 344467777 8888999999999987 6788889999999999999999999888743332
Q ss_pred HHHhhhccccccccCCCccccccCcccHHHHHHHHHHhhhcCc-cchHHHHHHHHHHHHcCChHHHHHHHHHHhhcCCCC
Q 012143 121 VQIHHAQCLLPESSGDNSLDKELEPEELEEILSKLKESMQSDT-RQAVVWNTLGLILLKSGRLQSSISVLSSLLAVDPNN 199 (470)
Q Consensus 121 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~p-~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~ 199 (470)
..|..+| |+-.=-.+|+++.+... .+..+...+|......++|.++.++++..++++|-.
T Consensus 458 --------~lyc~LG-----------Dv~~d~s~yEkawElsn~~sarA~r~~~~~~~~~~~fs~~~~hle~sl~~nplq 518 (777)
T KOG1128|consen 458 --------RLYCLLG-----------DVLHDPSLYEKAWELSNYISARAQRSLALLILSNKDFSEADKHLERSLEINPLQ 518 (777)
T ss_pred --------hhHHHhh-----------hhccChHHHHHHHHHhhhhhHHHHHhhccccccchhHHHHHHHHHHHhhcCccc
Confidence 1112222 22333344444444322 234577778888888999999999999999999999
Q ss_pred hHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCChHHHHHHHHHHHhhhcccccccccchhhhhHHHhcCCHHHHHHHHH
Q 012143 200 CDCIGNLGIAYFQSGDMEQSAKCFQDLILKDQNHPAALINYAALLLCKYGSVLAGAGANTGEGACLDQASAVNVAKECLL 279 (470)
Q Consensus 200 ~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~ 279 (470)
...|+.+|.+..+.++++.|.+.|.+++.++|++..+|.+++..+. +.++-.+|...+.
T Consensus 519 ~~~wf~~G~~ALqlek~q~av~aF~rcvtL~Pd~~eaWnNls~ayi---------------------~~~~k~ra~~~l~ 577 (777)
T KOG1128|consen 519 LGTWFGLGCAALQLEKEQAAVKAFHRCVTLEPDNAEAWNNLSTAYI---------------------RLKKKKRAFRKLK 577 (777)
T ss_pred hhHHHhccHHHHHHhhhHHHHHHHHHHhhcCCCchhhhhhhhHHHH---------------------HHhhhHHHHHHHH
Confidence 9999999999999999999999999999999999999999999998 6899999999999
Q ss_pred HHHhcCCCCHHHHHHHHHHHHHcCChhHHHHHHHHHHhcCC
Q 012143 280 AALKADPKAAHIWANLANAYYLTGDHRSSGKCLEKAAKLEP 320 (470)
Q Consensus 280 ~~~~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~p 320 (470)
++++-+-++..+|.+...+....|.+++|+..|.+.+.+..
T Consensus 578 EAlKcn~~~w~iWENymlvsvdvge~eda~~A~~rll~~~~ 618 (777)
T KOG1128|consen 578 EALKCNYQHWQIWENYMLVSVDVGEFEDAIKAYHRLLDLRK 618 (777)
T ss_pred HHhhcCCCCCeeeechhhhhhhcccHHHHHHHHHHHHHhhh
Confidence 99999988999999999999999999999999999887643
|
|
| >PRK14720 transcript cleavage factor/unknown domain fusion protein; Provisional | Back alignment and domain information |
|---|
Probab=99.50 E-value=4.1e-12 Score=122.89 Aligned_cols=212 Identities=11% Similarity=0.013 Sum_probs=158.0
Q ss_pred hcCccchHHHHHHHHHHHHcCChHHHHHHHHHHhhcCCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCChHHHHH
Q 012143 160 QSDTRQAVVWNTLGLILLKSGRLQSSISVLSSLLAVDPNNCDCIGNLGIAYFQSGDMEQSAKCFQDLILKDQNHPAALIN 239 (470)
Q Consensus 160 ~~~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~ 239 (470)
..+|.+..++..++..+...|++++|+..++.+++..|+....++.+|.++.+.+++.++... .++...+.+.
T Consensus 25 ~~~p~n~~a~~~Li~~~~~~~~~deai~i~~~~l~~~P~~i~~yy~~G~l~~q~~~~~~~~lv--~~l~~~~~~~----- 97 (906)
T PRK14720 25 NYSLSKFKELDDLIDAYKSENLTDEAKDICEEHLKEHKKSISALYISGILSLSRRPLNDSNLL--NLIDSFSQNL----- 97 (906)
T ss_pred cCCcchHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCcceehHHHHHHHHHhhcchhhhhhh--hhhhhccccc-----
Confidence 457899999999999999999999999999999999999999999999999999998877766 5555444332
Q ss_pred HHHHHHhhhcccccccccchhhhhHHHhcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCChhHHHHHHHHHHhcC
Q 012143 240 YAALLLCKYGSVLAGAGANTGEGACLDQASAVNVAKECLLAALKADPKAAHIWANLANAYYLTGDHRSSGKCLEKAAKLE 319 (470)
Q Consensus 240 l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~ 319 (470)
++ .+++++...+...+++..+++.+|.||-++|++++|...|+++++.+
T Consensus 98 ------------------------------~~-~~ve~~~~~i~~~~~~k~Al~~LA~~Ydk~g~~~ka~~~yer~L~~D 146 (906)
T PRK14720 98 ------------------------------KW-AIVEHICDKILLYGENKLALRTLAEAYAKLNENKKLKGVWERLVKAD 146 (906)
T ss_pred ------------------------------ch-hHHHHHHHHHHhhhhhhHHHHHHHHHHHHcCChHHHHHHHHHHHhcC
Confidence 23 34444444555566667778888888888888888888888888887
Q ss_pred CCcccHHHHHHHHHHHHhhhccCchHHhhhhHHHHHHHhhcCCCCCCCcHHHHHHHHHHHhccccHHHHHHHHHHHhcch
Q 012143 320 PNCMSTRYAVAVSRIKDAERSQEPTEQLSWAGNEMASILREGDPVQIEPPIAWAGFAAVQKTHHEVAAAFETEENELSKM 399 (470)
Q Consensus 320 p~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~ 399 (470)
|+++. +..++|..+... +.++|...+.+++.
T Consensus 147 ~~n~~----------------------------------------------aLNn~AY~~ae~-dL~KA~~m~~KAV~-- 177 (906)
T PRK14720 147 RDNPE----------------------------------------------IVKKLATSYEEE-DKEKAITYLKKAIY-- 177 (906)
T ss_pred cccHH----------------------------------------------HHHHHHHHHHHh-hHHHHHHHHHHHHH--
Confidence 77654 344444455555 67777777666554
Q ss_pred hhhhHhhHHHHHHHhccHHHHHHHHHHHHhcCCCcHHH--------------------HHHHHHHHHHcCChHHHHHHHH
Q 012143 400 EECAGAGESAFLDQASAVNVAKECLLAALKADPKAAHI--------------------WANLANAYYLTGDHRSSGKCLE 459 (470)
Q Consensus 400 ~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~p~~~~~--------------------~~~la~~~~~~g~~~~A~~~~~ 459 (470)
.+...+++.++.+++++.+..+|++.+. +.-+-.+|...+++++++.+++
T Consensus 178 ----------~~i~~kq~~~~~e~W~k~~~~~~~d~d~f~~i~~ki~~~~~~~~~~~~~~~l~~~y~~~~~~~~~i~iLK 247 (906)
T PRK14720 178 ----------RFIKKKQYVGIEEIWSKLVHYNSDDFDFFLRIERKVLGHREFTRLVGLLEDLYEPYKALEDWDEVIYILK 247 (906)
T ss_pred ----------HHHhhhcchHHHHHHHHHHhcCcccchHHHHHHHHHHhhhccchhHHHHHHHHHHHhhhhhhhHHHHHHH
Confidence 3555667788888888888887776544 2223377788888999999999
Q ss_pred HHHHhhccC
Q 012143 460 KVLMVYCSS 468 (470)
Q Consensus 460 ~al~~~~~~ 468 (470)
.+++.-+++
T Consensus 248 ~iL~~~~~n 256 (906)
T PRK14720 248 KILEHDNKN 256 (906)
T ss_pred HHHhcCCcc
Confidence 999877654
|
|
| >KOG1128 consensus Uncharacterized conserved protein, contains TPR repeats [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.48 E-value=4.4e-12 Score=116.03 Aligned_cols=193 Identities=15% Similarity=0.158 Sum_probs=122.7
Q ss_pred CCChhHHHHHHHHHHHhCChhHHHHHHHHHHHHHhhhhcccchhhhHHHHHHhhhccccccccCCCccccccCcccHHHH
Q 012143 72 PKNAHAHFLLGLMYQRLGQPLKAVSSYEKAEEILLRCEADIARPELLSLVQIHHAQCLLPESSGDNSLDKELEPEELEEI 151 (470)
Q Consensus 72 p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A 151 (470)
|..+..-..++..+...|-...|+..|++.-..+|. ..+| ...|+..+|
T Consensus 395 pp~Wq~q~~laell~slGitksAl~I~Erlemw~~v--------------------i~CY-----------~~lg~~~ka 443 (777)
T KOG1128|consen 395 PPIWQLQRLLAELLLSLGITKSALVIFERLEMWDPV--------------------ILCY-----------LLLGQHGKA 443 (777)
T ss_pred CCcchHHHHHHHHHHHcchHHHHHHHHHhHHHHHHH--------------------HHHH-----------HHhcccchH
Confidence 333445566777777777777777777775443221 1111 223334666
Q ss_pred HHHHHHhhhcCccchHHHHHHHHHHHHcCChHHHHHHHHHHhhcCCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCC
Q 012143 152 LSKLKESMQSDTRQAVVWNTLGLILLKSGRLQSSISVLSSLLAVDPNNCDCIGNLGIAYFQSGDMEQSAKCFQDLILKDQ 231 (470)
Q Consensus 152 ~~~~~~~~~~~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p 231 (470)
..+..+-++ .|.++..|..+|++.....-|++|.++.+. .+..+...+|......++|+++..+++..++++|
T Consensus 444 eei~~q~le-k~~d~~lyc~LGDv~~d~s~yEkawElsn~------~sarA~r~~~~~~~~~~~fs~~~~hle~sl~~np 516 (777)
T KOG1128|consen 444 EEINRQELE-KDPDPRLYCLLGDVLHDPSLYEKAWELSNY------ISARAQRSLALLILSNKDFSEADKHLERSLEINP 516 (777)
T ss_pred HHHHHHHhc-CCCcchhHHHhhhhccChHHHHHHHHHhhh------hhHHHHHhhccccccchhHHHHHHHHHHHhhcCc
Confidence 666666666 555566666666666655555555554443 2334556666666666777777777777777777
Q ss_pred CChHHHHHHHHHHHhhhcccccccccchhhhhHHHhcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCChhHHHHH
Q 012143 232 NHPAALINYAALLLCKYGSVLAGAGANTGEGACLDQASAVNVAKECLLAALKADPKAAHIWANLANAYYLTGDHRSSGKC 311 (470)
Q Consensus 232 ~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~la~~~~~~g~~~~A~~~ 311 (470)
-....|+.+|.+.. +.+++..|.+.|.+++..+|++..+|.+++..|.+.|+-.+|...
T Consensus 517 lq~~~wf~~G~~AL---------------------qlek~q~av~aF~rcvtL~Pd~~eaWnNls~ayi~~~~k~ra~~~ 575 (777)
T KOG1128|consen 517 LQLGTWFGLGCAAL---------------------QLEKEQAAVKAFHRCVTLEPDNAEAWNNLSTAYIRLKKKKRAFRK 575 (777)
T ss_pred cchhHHHhccHHHH---------------------HHhhhHHHHHHHHHHhhcCCCchhhhhhhhHHHHHHhhhHHHHHH
Confidence 77777777766666 567777777777777777777777777777777777777777777
Q ss_pred HHHHHhcCCCcc
Q 012143 312 LEKAAKLEPNCM 323 (470)
Q Consensus 312 ~~~a~~~~p~~~ 323 (470)
++++++-+-++.
T Consensus 576 l~EAlKcn~~~w 587 (777)
T KOG1128|consen 576 LKEALKCNYQHW 587 (777)
T ss_pred HHHHhhcCCCCC
Confidence 777776664443
|
|
| >PRK15363 pathogenicity island 2 chaperone protein SscA; Provisional | Back alignment and domain information |
|---|
Probab=99.48 E-value=2.9e-12 Score=96.59 Aligned_cols=105 Identities=15% Similarity=0.108 Sum_probs=78.5
Q ss_pred hcC-ccchHHHHHHHHHHHHcCChHHHHHHHHHHhhcCCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCChHHHH
Q 012143 160 QSD-TRQAVVWNTLGLILLKSGRLQSSISVLSSLLAVDPNNCDCIGNLGIAYFQSGDMEQSAKCFQDLILKDQNHPAALI 238 (470)
Q Consensus 160 ~~~-p~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~ 238 (470)
.+. ++.-+..+.+|..+...|++++|...|+-+...+|.+...|++||.++..+|++.+|+..|.+++.++|+++..+.
T Consensus 28 ~~~~~~~l~~lY~~A~~ly~~G~l~~A~~~f~~L~~~Dp~~~~y~~gLG~~~Q~~g~~~~AI~aY~~A~~L~~ddp~~~~ 107 (157)
T PRK15363 28 DDDVTQPLNTLYRYAMQLMEVKEFAGAARLFQLLTIYDAWSFDYWFRLGECCQAQKHWGEAIYAYGRAAQIKIDAPQAPW 107 (157)
T ss_pred CCChHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCCCchHHH
Confidence 345 5566677777777777777777777777777777777777777777777777777777777777777777777777
Q ss_pred HHHHHHHhhhcccccccccchhhhhHHHhcCCHHHHHHHHHHHHhcC
Q 012143 239 NYAALLLCKYGSVLAGAGANTGEGACLDQASAVNVAKECLLAALKAD 285 (470)
Q Consensus 239 ~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~ 285 (470)
+.|.+++ ..|+.+.|.+.|+.++...
T Consensus 108 ~ag~c~L---------------------~lG~~~~A~~aF~~Ai~~~ 133 (157)
T PRK15363 108 AAAECYL---------------------ACDNVCYAIKALKAVVRIC 133 (157)
T ss_pred HHHHHHH---------------------HcCCHHHHHHHHHHHHHHh
Confidence 7777766 5777777777777777665
|
|
| >PRK15363 pathogenicity island 2 chaperone protein SscA; Provisional | Back alignment and domain information |
|---|
Probab=99.47 E-value=1.8e-12 Score=97.65 Aligned_cols=109 Identities=14% Similarity=0.051 Sum_probs=102.6
Q ss_pred HhhcC-CCChHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCChHHHHHHHHHHHhhhcccccccccchhhhhHHHhcCC
Q 012143 192 LLAVD-PNNCDCIGNLGIAYFQSGDMEQSAKCFQDLILKDQNHPAALINYAALLLCKYGSVLAGAGANTGEGACLDQASA 270 (470)
Q Consensus 192 a~~~~-~~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 270 (470)
...+. ++..+..+.+|..++..|++++|...|+-+..++|.+...|+++|.++. ..|+
T Consensus 26 l~~~~~~~~l~~lY~~A~~ly~~G~l~~A~~~f~~L~~~Dp~~~~y~~gLG~~~Q---------------------~~g~ 84 (157)
T PRK15363 26 LLDDDVTQPLNTLYRYAMQLMEVKEFAGAARLFQLLTIYDAWSFDYWFRLGECCQ---------------------AQKH 84 (157)
T ss_pred HHCCChHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCcccHHHHHHHHHHHH---------------------HHhh
Confidence 34567 7888899999999999999999999999999999999999999999988 7999
Q ss_pred HHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCChhHHHHHHHHHHhcCCC
Q 012143 271 VNVAKECLLAALKADPKAAHIWANLANAYYLTGDHRSSGKCLEKAAKLEPN 321 (470)
Q Consensus 271 ~~~A~~~~~~~~~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~p~ 321 (470)
+.+|+..|.+++.++|+++..+.++|.++...|+.+.|.+.|+.++.....
T Consensus 85 ~~~AI~aY~~A~~L~~ddp~~~~~ag~c~L~lG~~~~A~~aF~~Ai~~~~~ 135 (157)
T PRK15363 85 WGEAIYAYGRAAQIKIDAPQAPWAAAECYLACDNVCYAIKALKAVVRICGE 135 (157)
T ss_pred HHHHHHHHHHHHhcCCCCchHHHHHHHHHHHcCCHHHHHHHHHHHHHHhcc
Confidence 999999999999999999999999999999999999999999999988743
|
|
| >COG4783 Putative Zn-dependent protease, contains TPR repeats [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.42 E-value=1.6e-10 Score=101.55 Aligned_cols=154 Identities=21% Similarity=0.190 Sum_probs=137.1
Q ss_pred CCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCChHHHHHHHHHHHhhhcccccccccchhhhhHHHhcCCHHHHH
Q 012143 196 DPNNCDCIGNLGIAYFQSGDMEQSAKCFQDLILKDQNHPAALINYAALLLCKYGSVLAGAGANTGEGACLDQASAVNVAK 275 (470)
Q Consensus 196 ~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~ 275 (470)
.|....+++..+..++..|++++|+..+...+...|+|+..+...+.++. +.++.++|.
T Consensus 302 ~~~~~aa~YG~A~~~~~~~~~d~A~~~l~~L~~~~P~N~~~~~~~~~i~~---------------------~~nk~~~A~ 360 (484)
T COG4783 302 KRGGLAAQYGRALQTYLAGQYDEALKLLQPLIAAQPDNPYYLELAGDILL---------------------EANKAKEAI 360 (484)
T ss_pred CccchHHHHHHHHHHHHhcccchHHHHHHHHHHhCCCCHHHHHHHHHHHH---------------------HcCChHHHH
Confidence 37788899999999999999999999999999999999999888888887 799999999
Q ss_pred HHHHHHHhcCCCCHHHHHHHHHHHHHcCChhHHHHHHHHHHhcCCCcccHHHHHHHHHHHHhhhccCchHHhhhhHHHHH
Q 012143 276 ECLLAALKADPKAAHIWANLANAYYLTGDHRSSGKCLEKAAKLEPNCMSTRYAVAVSRIKDAERSQEPTEQLSWAGNEMA 355 (470)
Q Consensus 276 ~~~~~~~~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~p~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~ 355 (470)
+.+++++..+|+.+..+.++|.++.+.|++.+|+..+++.+..+|+++
T Consensus 361 e~~~kal~l~P~~~~l~~~~a~all~~g~~~eai~~L~~~~~~~p~dp-------------------------------- 408 (484)
T COG4783 361 ERLKKALALDPNSPLLQLNLAQALLKGGKPQEAIRILNRYLFNDPEDP-------------------------------- 408 (484)
T ss_pred HHHHHHHhcCCCccHHHHHHHHHHHhcCChHHHHHHHHHHhhcCCCCc--------------------------------
Confidence 999999999999999999999999999999999999999999999865
Q ss_pred HHhhcCCCCCCCcHHHHHHHHHHHhccccHHHHHHHHHHHhcchhhhhHhhHHHHHHHhccHHHHHHHHHHHHhcC
Q 012143 356 SILREGDPVQIEPPIAWAGFAAVQKTHHEVAAAFETEENELSKMEECAGAGESAFLDQASAVNVAKECLLAALKAD 431 (470)
Q Consensus 356 ~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~ 431 (470)
..|..++..|..+|+..++...+.+ .+...|++++|+..+..+.+..
T Consensus 409 --------------~~w~~LAqay~~~g~~~~a~~A~AE---------------~~~~~G~~~~A~~~l~~A~~~~ 455 (484)
T COG4783 409 --------------NGWDLLAQAYAELGNRAEALLARAE---------------GYALAGRLEQAIIFLMRASQQV 455 (484)
T ss_pred --------------hHHHHHHHHHHHhCchHHHHHHHHH---------------HHHhCCCHHHHHHHHHHHHHhc
Confidence 4677778888888888777665443 7888899999999999888865
|
|
| >PF04733 Coatomer_E: Coatomer epsilon subunit; InterPro: IPR006822 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment | Back alignment and domain information |
|---|
Probab=99.38 E-value=2.6e-11 Score=104.77 Aligned_cols=251 Identities=14% Similarity=0.084 Sum_probs=171.9
Q ss_pred cCcccHHHHHHHHHHhhhcCc-cchHHHHHHHHHHHHcCChHHHHHHHHHHhhcCCCChHHHHHHHHHHHHcCCHHHHHH
Q 012143 143 LEPEELEEILSKLKESMQSDT-RQAVVWNTLGLILLKSGRLQSSISVLSSLLAVDPNNCDCIGNLGIAYFQSGDMEQSAK 221 (470)
Q Consensus 143 ~~~~~~~~A~~~~~~~~~~~p-~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~la~~~~~~g~~~~A~~ 221 (470)
+-.|+|..++..++ ....+| ........+.+++..+|+++..+...... .+....+...++..+...++.+.++.
T Consensus 12 fy~G~Y~~~i~e~~-~~~~~~~~~~e~~~~~~Rs~iAlg~~~~vl~ei~~~---~~~~l~av~~la~y~~~~~~~e~~l~ 87 (290)
T PF04733_consen 12 FYLGNYQQCINEAS-LKSFSPENKLERDFYQYRSYIALGQYDSVLSEIKKS---SSPELQAVRLLAEYLSSPSDKESALE 87 (290)
T ss_dssp HCTT-HHHHCHHHH-CHTSTCHHHHHHHHHHHHHHHHTT-HHHHHHHS-TT---SSCCCHHHHHHHHHHCTSTTHHCHHH
T ss_pred HHhhhHHHHHHHhh-ccCCCchhHHHHHHHHHHHHHHcCChhHHHHHhccC---CChhHHHHHHHHHHHhCccchHHHHH
Confidence 45688899998777 323333 34557778899999999998777655442 23345566777776666567777877
Q ss_pred HHHHHHhhCCC--ChHHHHHHHHHHHhhhcccccccccchhhhhHHHhcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHH
Q 012143 222 CFQDLILKDQN--HPAALINYAALLLCKYGSVLAGAGANTGEGACLDQASAVNVAKECLLAALKADPKAAHIWANLANAY 299 (470)
Q Consensus 222 ~~~~~l~~~p~--~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~la~~~ 299 (470)
.++..+..... ++...... |.++...|++++|++.+.+. .+.+.......++
T Consensus 88 ~l~~~~~~~~~~~~~~~~~~~---------------------A~i~~~~~~~~~AL~~l~~~-----~~lE~~al~Vqi~ 141 (290)
T PF04733_consen 88 ELKELLADQAGESNEIVQLLA---------------------ATILFHEGDYEEALKLLHKG-----GSLELLALAVQIL 141 (290)
T ss_dssp HHHHCCCTS---CHHHHHHHH---------------------HHHHCCCCHHHHHHCCCTTT-----TCHHHHHHHHHHH
T ss_pred HHHHHHHhccccccHHHHHHH---------------------HHHHHHcCCHHHHHHHHHcc-----CcccHHHHHHHHH
Confidence 77766543322 22222222 33444789999999888764 5678888889999
Q ss_pred HHcCChhHHHHHHHHHHhcCCCcccHHHHHHHHHHHHhhhccCchHHhhhhHHHHHHHhhcCCCCCCCcHHHHHHHHHHH
Q 012143 300 YLTGDHRSSGKCLEKAAKLEPNCMSTRYAVAVSRIKDAERSQEPTEQLSWAGNEMASILREGDPVQIEPPIAWAGFAAVQ 379 (470)
Q Consensus 300 ~~~g~~~~A~~~~~~a~~~~p~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~ 379 (470)
..+++++.|.+.++.+.+.+.+....... .+|.. +.
T Consensus 142 L~~~R~dlA~k~l~~~~~~~eD~~l~qLa-----------------------------------------~awv~---l~ 177 (290)
T PF04733_consen 142 LKMNRPDLAEKELKNMQQIDEDSILTQLA-----------------------------------------EAWVN---LA 177 (290)
T ss_dssp HHTT-HHHHHHHHHHHHCCSCCHHHHHHH-----------------------------------------HHHHH---HH
T ss_pred HHcCCHHHHHHHHHHHHhcCCcHHHHHHH-----------------------------------------HHHHH---HH
Confidence 99999999999999998887764322211 12222 12
Q ss_pred hccccHHHHHHHHHHHhcc--hhhhhHhhHHHHHHHhccHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHcCCh-HHHHH
Q 012143 380 KTHHEVAAAFETEENELSK--MEECAGAGESAFLDQASAVNVAKECLLAALKADPKAAHIWANLANAYYLTGDH-RSSGK 456 (470)
Q Consensus 380 ~~~~~~~~A~~~~~~~~~~--~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~-~~A~~ 456 (470)
....++.+|...|+...+. ..+..+.+++.++...|+|++|...++++++.+|++++++.+++.+...+|+. +.+.+
T Consensus 178 ~g~e~~~~A~y~f~El~~~~~~t~~~lng~A~~~l~~~~~~eAe~~L~~al~~~~~~~d~LaNliv~~~~~gk~~~~~~~ 257 (290)
T PF04733_consen 178 TGGEKYQDAFYIFEELSDKFGSTPKLLNGLAVCHLQLGHYEEAEELLEEALEKDPNDPDTLANLIVCSLHLGKPTEAAER 257 (290)
T ss_dssp HTTTCCCHHHHHHHHHHCCS--SHHHHHHHHHHHHHCT-HHHHHHHHHHHCCC-CCHHHHHHHHHHHHHHTT-TCHHHHH
T ss_pred hCchhHHHHHHHHHHHHhccCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhccCCHHHHHHHHHHHHHhCCChhHHHH
Confidence 2224678888888885553 34456779999999999999999999999999999999999999999999998 55666
Q ss_pred HHHHHHHhhcc
Q 012143 457 CLEKVLMVYCS 467 (470)
Q Consensus 457 ~~~~al~~~~~ 467 (470)
++.+.....|+
T Consensus 258 ~l~qL~~~~p~ 268 (290)
T PF04733_consen 258 YLSQLKQSNPN 268 (290)
T ss_dssp HHHHCHHHTTT
T ss_pred HHHHHHHhCCC
Confidence 77776655553
|
This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the epsilon subunit of the coatomer complex, which is involved in the regulation of intracellular protein trafficking between the endoplasmic reticulum and the Golgi complex []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006890 retrograde vesicle-mediated transport, Golgi to ER, 0030126 COPI vesicle coat; PDB: 3MV2_B 3MV3_F 3MKR_A. |
| >KOG4340 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=99.38 E-value=2.6e-10 Score=93.55 Aligned_cols=176 Identities=14% Similarity=0.077 Sum_probs=141.9
Q ss_pred cCcccHHHHHHHHHHhhhcCccchHHHHHHHHHHHHcCChHHHHHHHHHHhhcCCCChHHHHHHHHHHHHcCCHHHHHHH
Q 012143 143 LEPEELEEILSKLKESMQSDTRQAVVWNTLGLILLKSGRLQSSISVLSSLLAVDPNNCDCIGNLGIAYFQSGDMEQSAKC 222 (470)
Q Consensus 143 ~~~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~la~~~~~~g~~~~A~~~ 222 (470)
++..+|..|++++..-.+..|.+...+..+|.||....+|..|..+|++.-...|......+..+..+++.+.+.+|+..
T Consensus 21 I~d~ry~DaI~~l~s~~Er~p~~rAgLSlLgyCYY~~Q~f~~AA~CYeQL~ql~P~~~qYrlY~AQSLY~A~i~ADALrV 100 (459)
T KOG4340|consen 21 IRDARYADAIQLLGSELERSPRSRAGLSLLGYCYYRLQEFALAAECYEQLGQLHPELEQYRLYQAQSLYKACIYADALRV 100 (459)
T ss_pred HHHhhHHHHHHHHHHHHhcCccchHHHHHHHHHHHHHHHHHHHHHHHHHHHhhChHHHHHHHHHHHHHHHhcccHHHHHH
Confidence 46678899999999999999999999999999999999999999999999999999999999999999999999999988
Q ss_pred HHHHHhhCCCChHHHHHHHHHHHhhhcc-----------cccccccchhhhhHHHhcCCHHHHHHHHHHHHhcCCCCHHH
Q 012143 223 FQDLILKDQNHPAALINYAALLLCKYGS-----------VLAGAGANTGEGACLDQASAVNVAKECLLAALKADPKAAHI 291 (470)
Q Consensus 223 ~~~~l~~~p~~~~~~~~l~~~~~~~~~~-----------~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~ 291 (470)
.........-.......-+.+.....+- ....+......|-+..+.|+++.|++-|+.+++...-.+-.
T Consensus 101 ~~~~~D~~~L~~~~lqLqaAIkYse~Dl~g~rsLveQlp~en~Ad~~in~gCllykegqyEaAvqkFqaAlqvsGyqpll 180 (459)
T KOG4340|consen 101 AFLLLDNPALHSRVLQLQAAIKYSEGDLPGSRSLVEQLPSENEADGQINLGCLLYKEGQYEAAVQKFQAALQVSGYQPLL 180 (459)
T ss_pred HHHhcCCHHHHHHHHHHHHHHhcccccCcchHHHHHhccCCCccchhccchheeeccccHHHHHHHHHHHHhhcCCCchh
Confidence 8766542111111111111111111000 01246667778889999999999999999999999888999
Q ss_pred HHHHHHHHHHcCChhHHHHHHHHHHhc
Q 012143 292 WANLANAYYLTGDHRSSGKCLEKAAKL 318 (470)
Q Consensus 292 ~~~la~~~~~~g~~~~A~~~~~~a~~~ 318 (470)
-++++.++++.|++..|+++....++.
T Consensus 181 AYniALaHy~~~qyasALk~iSEIieR 207 (459)
T KOG4340|consen 181 AYNLALAHYSSRQYASALKHISEIIER 207 (459)
T ss_pred HHHHHHHHHhhhhHHHHHHHHHHHHHh
Confidence 999999999999999999998887764
|
|
| >PLN03088 SGT1, suppressor of G2 allele of SKP1; Provisional | Back alignment and domain information |
|---|
Probab=99.38 E-value=1.9e-11 Score=109.70 Aligned_cols=112 Identities=12% Similarity=0.131 Sum_probs=67.4
Q ss_pred HHHHHHHHHcCChHHHHHHHHHHhhcCCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCChHHHHHHHHHHHhhhc
Q 012143 170 NTLGLILLKSGRLQSSISVLSSLLAVDPNNCDCIGNLGIAYFQSGDMEQSAKCFQDLILKDQNHPAALINYAALLLCKYG 249 (470)
Q Consensus 170 ~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~l~~~~~~~~~ 249 (470)
...|...+..|++++|+..|+++++++|+++.++..+|.++..+|++++|+..+++++.++|.++.+++.+|.++.
T Consensus 6 ~~~a~~a~~~~~~~~Ai~~~~~Al~~~P~~~~a~~~~a~~~~~~g~~~eAl~~~~~Al~l~P~~~~a~~~lg~~~~---- 81 (356)
T PLN03088 6 EDKAKEAFVDDDFALAVDLYTQAIDLDPNNAELYADRAQANIKLGNFTEAVADANKAIELDPSLAKAYLRKGTACM---- 81 (356)
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcCCHHHHHHHHHHHH----
Confidence 3445555566666666666666666666666666666666666666666666666666666666666655555554
Q ss_pred ccccccccchhhhhHHHhcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHc
Q 012143 250 SVLAGAGANTGEGACLDQASAVNVAKECLLAALKADPKAAHIWANLANAYYLT 302 (470)
Q Consensus 250 ~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~la~~~~~~ 302 (470)
..|++++|+..|+++++++|+++.+...++.+...+
T Consensus 82 -----------------~lg~~~eA~~~~~~al~l~P~~~~~~~~l~~~~~kl 117 (356)
T PLN03088 82 -----------------KLEEYQTAKAALEKGASLAPGDSRFTKLIKECDEKI 117 (356)
T ss_pred -----------------HhCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHH
Confidence 456666666666666666666666655555554443
|
|
| >KOG2047 consensus mRNA splicing factor [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=99.36 E-value=2.5e-08 Score=90.69 Aligned_cols=437 Identities=13% Similarity=0.069 Sum_probs=264.5
Q ss_pred hhhhhhhhhHHHHHHHHHHHHhcC-------CCCcchhhhcccchhhhh---cChhhHHHHHHHHHHhCCCCh-hHHHHH
Q 012143 13 KKINKLGKCRSRISSKMDSALEFG-------VDADGDQSGLGTSSSSRE---EKVSSLKTGLVHVARKMPKNA-HAHFLL 81 (470)
Q Consensus 13 ~~~~~~g~~~~a~~~~~~~~l~~~-------p~~~~~~~~~~~~~~~~~---~~~~~A~~~~~~~l~~~p~~~-~~~~~l 81 (470)
.++.+.++..++. +.+...+..+ |.+-+.|..+... ..+. +.--.....++..+...|+.. ..|..|
T Consensus 177 e~L~~~d~~~eaa-~~la~vln~d~f~sk~gkSn~qlw~elcdl-is~~p~~~~slnvdaiiR~gi~rftDq~g~Lw~SL 254 (835)
T KOG2047|consen 177 EYLAKSDRLDEAA-QRLATVLNQDEFVSKKGKSNHQLWLELCDL-ISQNPDKVQSLNVDAIIRGGIRRFTDQLGFLWCSL 254 (835)
T ss_pred HHHHhccchHHHH-HHHHHhcCchhhhhhcccchhhHHHHHHHH-HHhCcchhcccCHHHHHHhhcccCcHHHHHHHHHH
Confidence 3456667777776 6676666543 3344455544433 2221 222223445556666666654 578899
Q ss_pred HHHHHHhCChhHHHHHHHHHHHHHhhhhc-------------------------ccchhhhHHHHHHhhh-------ccc
Q 012143 82 GLMYQRLGQPLKAVSSYEKAEEILLRCEA-------------------------DIARPELLSLVQIHHA-------QCL 129 (470)
Q Consensus 82 ~~~~~~~g~~~~A~~~~~~al~~~~~~~~-------------------------~~~~~~~~~~~~~~~~-------~~~ 129 (470)
|..|.+.|.+++|...|++++..-..-.+ ....+........+.. ...
T Consensus 255 AdYYIr~g~~ekarDvyeeai~~v~tvrDFt~ifd~Ya~FEE~~~~~~me~a~~~~~n~ed~~dl~~~~a~~e~lm~rr~ 334 (835)
T KOG2047|consen 255 ADYYIRSGLFEKARDVYEEAIQTVMTVRDFTQIFDAYAQFEESCVAAKMELADEESGNEEDDVDLELHMARFESLMNRRP 334 (835)
T ss_pred HHHHHHhhhhHHHHHHHHHHHHhheehhhHHHHHHHHHHHHHHHHHHHHhhhhhcccChhhhhhHHHHHHHHHHHHhccc
Confidence 99999999999999999999875211100 0000000000000000 000
Q ss_pred cc-----cccCCC-----ccccccCcccHHHHHHHHHHhhh-cCccc-----hHHHHHHHHHHHHcCChHHHHHHHHHHh
Q 012143 130 LP-----ESSGDN-----SLDKELEPEELEEILSKLKESMQ-SDTRQ-----AVVWNTLGLILLKSGRLQSSISVLSSLL 193 (470)
Q Consensus 130 ~~-----~~~~~~-----~~~~~~~~~~~~~A~~~~~~~~~-~~p~~-----~~~~~~l~~~~~~~~~~~~A~~~~~~a~ 193 (470)
++ ...... .-..-+..|+..+-+..|..++. .+|.. ...|..+|..|...|+.+.|...|+++.
T Consensus 335 ~~lNsVlLRQn~~nV~eW~kRV~l~e~~~~~~i~tyteAv~~vdP~ka~Gs~~~Lw~~faklYe~~~~l~~aRvifeka~ 414 (835)
T KOG2047|consen 335 LLLNSVLLRQNPHNVEEWHKRVKLYEGNAAEQINTYTEAVKTVDPKKAVGSPGTLWVEFAKLYENNGDLDDARVIFEKAT 414 (835)
T ss_pred hHHHHHHHhcCCccHHHHHhhhhhhcCChHHHHHHHHHHHHccCcccCCCChhhHHHHHHHHHHhcCcHHHHHHHHHHhh
Confidence 00 000000 00113355667777788877765 35543 3477888888888888888888888888
Q ss_pred hcCCC----ChHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCChH-HHH-----HHHHHHHhhhcccccccccchhhhh
Q 012143 194 AVDPN----NCDCIGNLGIAYFQSGDMEQSAKCFQDLILKDQNHPA-ALI-----NYAALLLCKYGSVLAGAGANTGEGA 263 (470)
Q Consensus 194 ~~~~~----~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~-~~~-----~l~~~~~~~~~~~~~~~~~~~~~~~ 263 (470)
+..-. -..+|...|..-.+..+++.|+.+.+++... |..+. ..+ .-..++. ....|...++
T Consensus 415 ~V~y~~v~dLa~vw~~waemElrh~~~~~Al~lm~~A~~v-P~~~~~~~yd~~~pvQ~rlhr--------SlkiWs~y~D 485 (835)
T KOG2047|consen 415 KVPYKTVEDLAEVWCAWAEMELRHENFEAALKLMRRATHV-PTNPELEYYDNSEPVQARLHR--------SLKIWSMYAD 485 (835)
T ss_pred cCCccchHHHHHHHHHHHHHHHhhhhHHHHHHHHHhhhcC-CCchhhhhhcCCCcHHHHHHH--------hHHHHHHHHH
Confidence 76432 2467788888888888888888888887653 32221 000 0001111 2334555667
Q ss_pred HHHhcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCChhHHHHHHHHHHhcCCCc--ccHHHHHHHHHHHHhhhcc
Q 012143 264 CLDQASAVNVAKECLLAALKADPKAAHIWANLANAYYLTGDHRSSGKCLEKAAKLEPNC--MSTRYAVAVSRIKDAERSQ 341 (470)
Q Consensus 264 ~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~p~~--~~~~~~l~~~~~~~~~~~~ 341 (470)
.....|-++.....|++.+.+.--.|..-.+.|..+....-+++|.+.|++.+.+.|-. .+.|.......+.+...
T Consensus 486 leEs~gtfestk~vYdriidLriaTPqii~NyAmfLEeh~yfeesFk~YErgI~LFk~p~v~diW~tYLtkfi~rygg-- 563 (835)
T KOG2047|consen 486 LEESLGTFESTKAVYDRIIDLRIATPQIIINYAMFLEEHKYFEESFKAYERGISLFKWPNVYDIWNTYLTKFIKRYGG-- 563 (835)
T ss_pred HHHHhccHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhHHHHHHHHHHHcCCccCCCccHHHHHHHHHHHHHHHhcC--
Confidence 77788999999999999999988889999999999999999999999999999887532 22332221111111110
Q ss_pred CchHHhhhhHHHHHHHhhcCCCCCCCcHHHHHHHHHHHhccccHHHHHHHHHHHhcchhhhhHhhHHHHHHHhcc----H
Q 012143 342 EPTEQLSWAGNEMASILREGDPVQIEPPIAWAGFAAVQKTHHEVAAAFETEENELSKMEECAGAGESAFLDQASA----V 417 (470)
Q Consensus 342 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~l~~~~~~~~~----~ 417 (470)
..+..+..-+.+.+.... +...-.++...+..-.+-|....|+..|.++-......-.+.+-.+|...-. .
T Consensus 564 ---~klEraRdLFEqaL~~Cp--p~~aKtiyLlYA~lEEe~GLar~amsiyerat~~v~~a~~l~myni~I~kaae~yGv 638 (835)
T KOG2047|consen 564 ---TKLERARDLFEQALDGCP--PEHAKTIYLLYAKLEEEHGLARHAMSIYERATSAVKEAQRLDMYNIYIKKAAEIYGV 638 (835)
T ss_pred ---CCHHHHHHHHHHHHhcCC--HHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHhCC
Confidence 111222222333333211 1123346777888888889999999999996654444333333333332111 2
Q ss_pred HHHHHHHHHHHhcCCCc--HHHHHHHHHHHHHcCChHHHHHHHHHHHHhhcc
Q 012143 418 NVAKECLLAALKADPKA--AHIWANLANAYYLTGDHRSSGKCLEKVLMVYCS 467 (470)
Q Consensus 418 ~~A~~~~~~al~~~p~~--~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~ 467 (470)
..-...|++|++.-|+. .......+..-.++|+.+.|..+|.-+-++.+.
T Consensus 639 ~~TR~iYekaIe~Lp~~~~r~mclrFAdlEtklGEidRARaIya~~sq~~dP 690 (835)
T KOG2047|consen 639 PRTREIYEKAIESLPDSKAREMCLRFADLETKLGEIDRARAIYAHGSQICDP 690 (835)
T ss_pred cccHHHHHHHHHhCChHHHHHHHHHHHHHhhhhhhHHHHHHHHHhhhhcCCC
Confidence 34567889999988876 455677888889999999999999988887743
|
|
| >PRK04841 transcriptional regulator MalT; Provisional | Back alignment and domain information |
|---|
Probab=99.36 E-value=2.2e-09 Score=110.80 Aligned_cols=318 Identities=14% Similarity=0.016 Sum_probs=214.4
Q ss_pred cchhhhcccchhhhhcChhhHHHHHHHHHHhCCC---------ChhHHHHHHHHHHHhCChhHHHHHHHHHHHHHhhhhc
Q 012143 40 DGDQSGLGTSSSSREEKVSSLKTGLVHVARKMPK---------NAHAHFLLGLMYQRLGQPLKAVSSYEKAEEILLRCEA 110 (470)
Q Consensus 40 ~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~p~---------~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~ 110 (470)
+......+.. ....|+++++...+..+....+. .......+|.++...|++++|...+++++...+...
T Consensus 409 ~~l~~~~a~~-~~~~g~~~~a~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~~~~~- 486 (903)
T PRK04841 409 PRLVLLQAWL-AQSQHRYSEVNTLLARAEQELKDRNIELDGTLQAEFNALRAQVAINDGDPEEAERLAELALAELPLTW- 486 (903)
T ss_pred cchHHHHHHH-HHHCCCHHHHHHHHHHHHHhccccCcccchhHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHhcCCCcc-
Confidence 3344556666 77889999999999887654321 134556688899999999999999999998543321
Q ss_pred ccchhhhHHHHHHhhhccccccccCCCccccccCcccHHHHHHHHHHhhhcCcc------chHHHHHHHHHHHHcCChHH
Q 012143 111 DIARPELLSLVQIHHAQCLLPESSGDNSLDKELEPEELEEILSKLKESMQSDTR------QAVVWNTLGLILLKSGRLQS 184 (470)
Q Consensus 111 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~p~------~~~~~~~l~~~~~~~~~~~~ 184 (470)
..........++.+ +...|++++|...+++++..... ...++..+|.++...|++++
T Consensus 487 ------~~~~~~a~~~lg~~-----------~~~~G~~~~A~~~~~~al~~~~~~g~~~~~~~~~~~la~~~~~~G~~~~ 549 (903)
T PRK04841 487 ------YYSRIVATSVLGEV-----------HHCKGELARALAMMQQTEQMARQHDVYHYALWSLLQQSEILFAQGFLQA 549 (903)
T ss_pred ------HHHHHHHHHHHHHH-----------HHHcCCHHHHHHHHHHHHHHHhhhcchHHHHHHHHHHHHHHHHCCCHHH
Confidence 11111222233333 34567789999999999865332 13456778999999999999
Q ss_pred HHHHHHHHhhcCCC--------ChHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCChHHHHHHHHHHHhhhcccccccc
Q 012143 185 SISVLSSLLAVDPN--------NCDCIGNLGIAYFQSGDMEQSAKCFQDLILKDQNHPAALINYAALLLCKYGSVLAGAG 256 (470)
Q Consensus 185 A~~~~~~a~~~~~~--------~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~l~~~~~~~~~~~~~~~~ 256 (470)
|...+++++..... ....+..+|.++...|++++|...+.+++.............+ +.
T Consensus 550 A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~G~~~~A~~~~~~al~~~~~~~~~~~~~~--~~----------- 616 (903)
T PRK04841 550 AYETQEKAFQLIEEQHLEQLPMHEFLLRIRAQLLWEWARLDEAEQCARKGLEVLSNYQPQQQLQC--LA----------- 616 (903)
T ss_pred HHHHHHHHHHHHHHhccccccHHHHHHHHHHHHHHHhcCHHHHHHHHHHhHHhhhccCchHHHHH--HH-----------
Confidence 99999999875221 1234567889999999999999999999876432211111111 11
Q ss_pred cchhhhhHHHhcCCHHHHHHHHHHHHhcCCCC---HHHHH----HHHHHHHHcCChhHHHHHHHHHHhcCCCcccHHHHH
Q 012143 257 ANTGEGACLDQASAVNVAKECLLAALKADPKA---AHIWA----NLANAYYLTGDHRSSGKCLEKAAKLEPNCMSTRYAV 329 (470)
Q Consensus 257 ~~~~~~~~~~~~~~~~~A~~~~~~~~~~~p~~---~~~~~----~la~~~~~~g~~~~A~~~~~~a~~~~p~~~~~~~~l 329 (470)
.+|.++...|++++|...+.++..+.+.. ..... .....+...|+.+.|...+.......+... +.
T Consensus 617 ---~la~~~~~~G~~~~A~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~l~~~~~~~~~~~--~~-- 689 (903)
T PRK04841 617 ---MLAKISLARGDLDNARRYLNRLENLLGNGRYHSDWIANADKVRLIYWQMTGDKEAAANWLRQAPKPEFANN--HF-- 689 (903)
T ss_pred ---HHHHHHHHcCCHHHHHHHHHHHHHHHhcccccHhHhhHHHHHHHHHHHHCCCHHHHHHHHHhcCCCCCccc--hh--
Confidence 13455568999999999999997753321 11111 122445567888888888766544222111 00
Q ss_pred HHHHHHHhhhccCchHHhhhhHHHHHHHhhcCCCCCCCcHHHHHHHHHHHhccccHHHHHHHHHHHhcc--------hhh
Q 012143 330 AVSRIKDAERSQEPTEQLSWAGNEMASILREGDPVQIEPPIAWAGFAAVQKTHHEVAAAFETEENELSK--------MEE 401 (470)
Q Consensus 330 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~--------~~~ 401 (470)
....+..++.++...|++++|...+.+.+.. ...
T Consensus 690 --------------------------------------~~~~~~~~a~~~~~~g~~~~A~~~l~~al~~~~~~g~~~~~a 731 (903)
T PRK04841 690 --------------------------------------LQGQWRNIARAQILLGQFDEAEIILEELNENARSLRLMSDLN 731 (903)
T ss_pred --------------------------------------HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCchHHHH
Confidence 0123456788888899999999888886542 122
Q ss_pred hhHhhHHHHHHHhccHHHHHHHHHHHHhcCCCc
Q 012143 402 CAGAGESAFLDQASAVNVAKECLLAALKADPKA 434 (470)
Q Consensus 402 ~~~~~l~~~~~~~~~~~~A~~~~~~al~~~p~~ 434 (470)
.++..+|.++...|+.++|...+.+++++....
T Consensus 732 ~~~~~la~a~~~~G~~~~A~~~L~~Al~la~~~ 764 (903)
T PRK04841 732 RNLILLNQLYWQQGRKSEAQRVLLEALKLANRT 764 (903)
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHHhCcc
Confidence 457788999999999999999999999986544
|
|
| >PLN03088 SGT1, suppressor of G2 allele of SKP1; Provisional | Back alignment and domain information |
|---|
Probab=99.35 E-value=9.6e-12 Score=111.64 Aligned_cols=104 Identities=8% Similarity=0.085 Sum_probs=99.1
Q ss_pred ccCcccHHHHHHHHHHhhhcCccchHHHHHHHHHHHHcCChHHHHHHHHHHhhcCCCChHHHHHHHHHHHHcCCHHHHHH
Q 012143 142 ELEPEELEEILSKLKESMQSDTRQAVVWNTLGLILLKSGRLQSSISVLSSLLAVDPNNCDCIGNLGIAYFQSGDMEQSAK 221 (470)
Q Consensus 142 ~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~la~~~~~~g~~~~A~~ 221 (470)
.+..|++++|+..|++++..+|+++.+++.+|.++...|++++|+..+++++.++|+++.+++.+|.++..+|++++|+.
T Consensus 12 a~~~~~~~~Ai~~~~~Al~~~P~~~~a~~~~a~~~~~~g~~~eAl~~~~~Al~l~P~~~~a~~~lg~~~~~lg~~~eA~~ 91 (356)
T PLN03088 12 AFVDDDFALAVDLYTQAIDLDPNNAELYADRAQANIKLGNFTEAVADANKAIELDPSLAKAYLRKGTACMKLEEYQTAKA 91 (356)
T ss_pred HHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcCCHHHHHHHHHHHHHhCCHHHHHH
Confidence 45778999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHhhCCCChHHHHHHHHHHH
Q 012143 222 CFQDLILKDQNHPAALINYAALLL 245 (470)
Q Consensus 222 ~~~~~l~~~p~~~~~~~~l~~~~~ 245 (470)
.|++++.++|++......++.+..
T Consensus 92 ~~~~al~l~P~~~~~~~~l~~~~~ 115 (356)
T PLN03088 92 ALEKGASLAPGDSRFTKLIKECDE 115 (356)
T ss_pred HHHHHHHhCCCCHHHHHHHHHHHH
Confidence 999999999999998888777754
|
|
| >PF04733 Coatomer_E: Coatomer epsilon subunit; InterPro: IPR006822 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment | Back alignment and domain information |
|---|
Probab=99.35 E-value=1.7e-11 Score=105.87 Aligned_cols=261 Identities=17% Similarity=0.117 Sum_probs=173.8
Q ss_pred hhhhhhhhhhhHHHHHHHHHHHHhcCCC-CcchhhhcccchhhhhcChhhHHHHHHHHHHhCCCChhHHHHHHHHHHHhC
Q 012143 11 EGKKINKLGKCRSRISSKMDSALEFGVD-ADGDQSGLGTSSSSREEKVSSLKTGLVHVARKMPKNAHAHFLLGLMYQRLG 89 (470)
Q Consensus 11 ~~~~~~~~g~~~~a~~~~~~~~l~~~p~-~~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~l~~~~~~~g 89 (470)
.-+-.+=+|+|..++ ...+ ....+|+ .......+.++ +...|+++..+..+.. ..+....+...++..+...+
T Consensus 7 ~vrn~fy~G~Y~~~i-~e~~-~~~~~~~~~~e~~~~~~Rs-~iAlg~~~~vl~ei~~---~~~~~l~av~~la~y~~~~~ 80 (290)
T PF04733_consen 7 TVRNQFYLGNYQQCI-NEAS-LKSFSPENKLERDFYQYRS-YIALGQYDSVLSEIKK---SSSPELQAVRLLAEYLSSPS 80 (290)
T ss_dssp HHHHHHCTT-HHHHC-HHHH-CHTSTCHHHHHHHHHHHHH-HHHTT-HHHHHHHS-T---TSSCCCHHHHHHHHHHCTST
T ss_pred HHHHHHHhhhHHHHH-HHhh-ccCCCchhHHHHHHHHHHH-HHHcCChhHHHHHhcc---CCChhHHHHHHHHHHHhCcc
Confidence 345566788888887 5454 2222222 33345566677 7788877765544432 23333455666666665444
Q ss_pred ChhHHHHHHHHHHHHHhhhhcccchhhhHHHHHHhhhccccccccCCCccccccCcccHHHHHHHHHHhhhcCccchHHH
Q 012143 90 QPLKAVSSYEKAEEILLRCEADIARPELLSLVQIHHAQCLLPESSGDNSLDKELEPEELEEILSKLKESMQSDTRQAVVW 169 (470)
Q Consensus 90 ~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~ 169 (470)
+-+.++..++..+..... ...+ .. .+ ..|.+ +...|++++|++.+.+. .+.++.
T Consensus 81 ~~e~~l~~l~~~~~~~~~----~~~~-~~---~~--~~A~i-----------~~~~~~~~~AL~~l~~~-----~~lE~~ 134 (290)
T PF04733_consen 81 DKESALEELKELLADQAG----ESNE-IV---QL--LAATI-----------LFHEGDYEEALKLLHKG-----GSLELL 134 (290)
T ss_dssp THHCHHHHHHHCCCTS-------CHH-HH---HH--HHHHH-----------HCCCCHHHHHHCCCTTT-----TCHHHH
T ss_pred chHHHHHHHHHHHHhccc----cccH-HH---HH--HHHHH-----------HHHcCCHHHHHHHHHcc-----CcccHH
Confidence 555555555443321100 0001 11 11 11111 34678889999888765 456777
Q ss_pred HHHHHHHHHcCChHHHHHHHHHHhhcCCCChHHHHHHHHHHHHcC--CHHHHHHHHHHHHhhCCCChHHHHHHHHHHHhh
Q 012143 170 NTLGLILLKSGRLQSSISVLSSLLAVDPNNCDCIGNLGIAYFQSG--DMEQSAKCFQDLILKDQNHPAALINYAALLLCK 247 (470)
Q Consensus 170 ~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~la~~~~~~g--~~~~A~~~~~~~l~~~p~~~~~~~~l~~~~~~~ 247 (470)
.....++...++++.|.+.++.+.+.+.+..-+....+++....| .+.+|...|+......|.++..+..++.++.
T Consensus 135 al~Vqi~L~~~R~dlA~k~l~~~~~~~eD~~l~qLa~awv~l~~g~e~~~~A~y~f~El~~~~~~t~~~lng~A~~~l-- 212 (290)
T PF04733_consen 135 ALAVQILLKMNRPDLAEKELKNMQQIDEDSILTQLAEAWVNLATGGEKYQDAFYIFEELSDKFGSTPKLLNGLAVCHL-- 212 (290)
T ss_dssp HHHHHHHHHTT-HHHHHHHHHHHHCCSCCHHHHHHHHHHHHHHHTTTCCCHHHHHHHHHHCCS--SHHHHHHHHHHHH--
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHhCchhHHHHHHHHHHHHhccCCCHHHHHHHHHHHH--
Confidence 788889999999999999999999888887777777777777766 5899999999988877777777777777776
Q ss_pred hcccccccccchhhhhHHHhcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCh-hHHHHHHHHHHhcCCCccc
Q 012143 248 YGSVLAGAGANTGEGACLDQASAVNVAKECLLAALKADPKAAHIWANLANAYYLTGDH-RSSGKCLEKAAKLEPNCMS 324 (470)
Q Consensus 248 ~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~la~~~~~~g~~-~~A~~~~~~a~~~~p~~~~ 324 (470)
..|++++|.+.+.+++..+|+++.++.+++.+....|+. +.+.+++.+....+|+++.
T Consensus 213 -------------------~~~~~~eAe~~L~~al~~~~~~~d~LaNliv~~~~~gk~~~~~~~~l~qL~~~~p~h~~ 271 (290)
T PF04733_consen 213 -------------------QLGHYEEAEELLEEALEKDPNDPDTLANLIVCSLHLGKPTEAAERYLSQLKQSNPNHPL 271 (290)
T ss_dssp -------------------HCT-HHHHHHHHHHHCCC-CCHHHHHHHHHHHHHHTT-TCHHHHHHHHHCHHHTTTSHH
T ss_pred -------------------HhCCHHHHHHHHHHHHHhccCCHHHHHHHHHHHHHhCCChhHHHHHHHHHHHhCCCChH
Confidence 799999999999999999999999999999999999998 5566788888888888764
|
This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the epsilon subunit of the coatomer complex, which is involved in the regulation of intracellular protein trafficking between the endoplasmic reticulum and the Golgi complex []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006890 retrograde vesicle-mediated transport, Golgi to ER, 0030126 COPI vesicle coat; PDB: 3MV2_B 3MV3_F 3MKR_A. |
| >COG4235 Cytochrome c biogenesis factor [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=99.33 E-value=8.4e-11 Score=97.78 Aligned_cols=126 Identities=21% Similarity=0.269 Sum_probs=107.9
Q ss_pred hHHHHHHHHHHhhcCCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCChHHHHHHHHHHHhhhcccccccccchhh
Q 012143 182 LQSSISVLSSLLAVDPNNCDCIGNLGIAYFQSGDMEQSAKCFQDLILKDQNHPAALINYAALLLCKYGSVLAGAGANTGE 261 (470)
Q Consensus 182 ~~~A~~~~~~a~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~ 261 (470)
.+.-+.-++.-+..+|++...|..||.+|+.+|+++.|...|.+++++.|+++..+..++.++..+.
T Consensus 138 ~~~l~a~Le~~L~~nP~d~egW~~Lg~~ym~~~~~~~A~~AY~~A~rL~g~n~~~~~g~aeaL~~~a------------- 204 (287)
T COG4235 138 MEALIARLETHLQQNPGDAEGWDLLGRAYMALGRASDALLAYRNALRLAGDNPEILLGLAEALYYQA------------- 204 (287)
T ss_pred HHHHHHHHHHHHHhCCCCchhHHHHHHHHHHhcchhHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhc-------------
Confidence 4556667777788899999999999999999999999999999999999999999988888887532
Q ss_pred hhHHHhcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCChhHHHHHHHHHHhcCCCcccH
Q 012143 262 GACLDQASAVNVAKECLLAALKADPKAAHIWANLANAYYLTGDHRSSGKCLEKAAKLEPNCMST 325 (470)
Q Consensus 262 ~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~p~~~~~ 325 (470)
......++...|++++..+|.++.+.+.||..++..|+|.+|+..++..+...|.+..-
T Consensus 205 -----~~~~ta~a~~ll~~al~~D~~~iral~lLA~~afe~g~~~~A~~~Wq~lL~~lp~~~~r 263 (287)
T COG4235 205 -----GQQMTAKARALLRQALALDPANIRALSLLAFAAFEQGDYAEAAAAWQMLLDLLPADDPR 263 (287)
T ss_pred -----CCcccHHHHHHHHHHHhcCCccHHHHHHHHHHHHHcccHHHHHHHHHHHHhcCCCCCch
Confidence 23455788999999999999999999999999999999999999999999998876653
|
|
| >PRK10866 outer membrane biogenesis protein BamD; Provisional | Back alignment and domain information |
|---|
Probab=99.33 E-value=5.8e-10 Score=94.08 Aligned_cols=166 Identities=12% Similarity=0.066 Sum_probs=133.4
Q ss_pred cCcccHHHHHHHHHHhhhcCccchHH---HHHHHHHHHHcCChHHHHHHHHHHhhcCCCC---hHHHHHHHHHHHHcC--
Q 012143 143 LEPEELEEILSKLKESMQSDTRQAVV---WNTLGLILLKSGRLQSSISVLSSLLAVDPNN---CDCIGNLGIAYFQSG-- 214 (470)
Q Consensus 143 ~~~~~~~~A~~~~~~~~~~~p~~~~~---~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~---~~~~~~la~~~~~~g-- 214 (470)
+..|++++|+..|++++...|..+.+ .+.+|.++++.+++++|+..+++.++..|++ +.+++.+|.++...+
T Consensus 43 ~~~g~y~~Ai~~f~~l~~~yP~s~~a~~a~l~la~ayy~~~~y~~A~~~~e~fi~~~P~~~~~~~a~Y~~g~~~~~~~~~ 122 (243)
T PRK10866 43 LQDGNWKQAITQLEALDNRYPFGPYSQQVQLDLIYAYYKNADLPLAQAAIDRFIRLNPTHPNIDYVLYMRGLTNMALDDS 122 (243)
T ss_pred HHCCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCcCCCchHHHHHHHHHhhhhcchh
Confidence 56789999999999999999988654 4899999999999999999999999998876 457899998865543
Q ss_pred -------------C---HHHHHHHHHHHHhhCCCChHHH---HHHHHHHHhhhcccccccccchhhhhHHHhcCCHHHHH
Q 012143 215 -------------D---MEQSAKCFQDLILKDQNHPAAL---INYAALLLCKYGSVLAGAGANTGEGACLDQASAVNVAK 275 (470)
Q Consensus 215 -------------~---~~~A~~~~~~~l~~~p~~~~~~---~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~ 275 (470)
+ ..+|+..|++.++..|+..-+- ..+..+.... +..-+.+|..|.+.|.|.-|+
T Consensus 123 ~~~~~~~~~~~~rD~~~~~~A~~~~~~li~~yP~S~ya~~A~~rl~~l~~~l-------a~~e~~ia~~Y~~~~~y~AA~ 195 (243)
T PRK10866 123 ALQGFFGVDRSDRDPQHARAAFRDFSKLVRGYPNSQYTTDATKRLVFLKDRL-------AKYELSVAEYYTKRGAYVAVV 195 (243)
T ss_pred hhhhccCCCccccCHHHHHHHHHHHHHHHHHCcCChhHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHcCchHHHH
Confidence 1 3578899999999999875432 2222222111 223345789999999999999
Q ss_pred HHHHHHHhcCCC---CHHHHHHHHHHHHHcCChhHHHHHHHHH
Q 012143 276 ECLLAALKADPK---AAHIWANLANAYYLTGDHRSSGKCLEKA 315 (470)
Q Consensus 276 ~~~~~~~~~~p~---~~~~~~~la~~~~~~g~~~~A~~~~~~a 315 (470)
.-++.+++..|+ ..+++..++.+|..+|..++|.......
T Consensus 196 ~r~~~v~~~Yp~t~~~~eal~~l~~ay~~lg~~~~a~~~~~~l 238 (243)
T PRK10866 196 NRVEQMLRDYPDTQATRDALPLMENAYRQLQLNAQADKVAKII 238 (243)
T ss_pred HHHHHHHHHCCCCchHHHHHHHHHHHHHHcCChHHHHHHHHHH
Confidence 999999999887 5678899999999999999998876543
|
|
| >COG4783 Putative Zn-dependent protease, contains TPR repeats [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.33 E-value=1.8e-10 Score=101.34 Aligned_cols=139 Identities=19% Similarity=0.229 Sum_probs=130.5
Q ss_pred ccchHHHHHHHHHHHHcCChHHHHHHHHHHhhcCCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCChHHHHHHHH
Q 012143 163 TRQAVVWNTLGLILLKSGRLQSSISVLSSLLAVDPNNCDCIGNLGIAYFQSGDMEQSAKCFQDLILKDQNHPAALINYAA 242 (470)
Q Consensus 163 p~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~l~~ 242 (470)
|....+++..+..++..|++++|+..++..+...|+++..+...+.++...|+..+|.+.+++++.++|+.+..+.++|.
T Consensus 303 ~~~~aa~YG~A~~~~~~~~~d~A~~~l~~L~~~~P~N~~~~~~~~~i~~~~nk~~~A~e~~~kal~l~P~~~~l~~~~a~ 382 (484)
T COG4783 303 RGGLAAQYGRALQTYLAGQYDEALKLLQPLIAAQPDNPYYLELAGDILLEANKAKEAIERLKKALALDPNSPLLQLNLAQ 382 (484)
T ss_pred ccchHHHHHHHHHHHHhcccchHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCccHHHHHHHH
Confidence 67788999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHhhhcccccccccchhhhhHHHhcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCChhHHHHHHHHHHhcCCCc
Q 012143 243 LLLCKYGSVLAGAGANTGEGACLDQASAVNVAKECLLAALKADPKAAHIWANLANAYYLTGDHRSSGKCLEKAAKLEPNC 322 (470)
Q Consensus 243 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~p~~ 322 (470)
.+. +.|++.+|+..++..+..+|+++..|..|+..|..+|+..+|...+.+.......-
T Consensus 383 all---------------------~~g~~~eai~~L~~~~~~~p~dp~~w~~LAqay~~~g~~~~a~~A~AE~~~~~G~~ 441 (484)
T COG4783 383 ALL---------------------KGGKPQEAIRILNRYLFNDPEDPNGWDLLAQAYAELGNRAEALLARAEGYALAGRL 441 (484)
T ss_pred HHH---------------------hcCChHHHHHHHHHHhhcCCCCchHHHHHHHHHHHhCchHHHHHHHHHHHHhCCCH
Confidence 988 79999999999999999999999999999999999999999998888887776553
|
|
| >PF13525 YfiO: Outer membrane lipoprotein; PDB: 3TGO_A 3Q5M_A 2YHC_A | Back alignment and domain information |
|---|
Probab=99.30 E-value=6.3e-10 Score=91.77 Aligned_cols=174 Identities=19% Similarity=0.193 Sum_probs=120.4
Q ss_pred hhHHHHHHHHHHHhCChhHHHHHHHHHHHHHhhhhcccchhhhHHHHHHhhhccccccccCCCccccccCcccHHHHHHH
Q 012143 75 AHAHFLLGLMYQRLGQPLKAVSSYEKAEEILLRCEADIARPELLSLVQIHHAQCLLPESSGDNSLDKELEPEELEEILSK 154 (470)
Q Consensus 75 ~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~ 154 (470)
+..++..|..++..|++.+|+..|++++...|.+
T Consensus 5 ~~~lY~~a~~~~~~g~y~~Ai~~f~~l~~~~P~s---------------------------------------------- 38 (203)
T PF13525_consen 5 AEALYQKALEALQQGDYEEAIKLFEKLIDRYPNS---------------------------------------------- 38 (203)
T ss_dssp HHHHHHHHHHHHHCT-HHHHHHHHHHHHHH-TTS----------------------------------------------
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCCC----------------------------------------------
Confidence 4566666777777777777777777666654432
Q ss_pred HHHhhhcCccchHHHHHHHHHHHHcCChHHHHHHHHHHhhcCCCCh---HHHHHHHHHHHHc-----------CCHHHHH
Q 012143 155 LKESMQSDTRQAVVWNTLGLILLKSGRLQSSISVLSSLLAVDPNNC---DCIGNLGIAYFQS-----------GDMEQSA 220 (470)
Q Consensus 155 ~~~~~~~~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~---~~~~~la~~~~~~-----------g~~~~A~ 220 (470)
|.-+.+.+.+|.+++..|++++|+..+++.++..|+++ .+++.+|.+++.+ +...+|+
T Consensus 39 --------~~a~~A~l~la~a~y~~~~y~~A~~~~~~fi~~yP~~~~~~~A~Y~~g~~~~~~~~~~~~~~~D~~~~~~A~ 110 (203)
T PF13525_consen 39 --------PYAPQAQLMLAYAYYKQGDYEEAIAAYERFIKLYPNSPKADYALYMLGLSYYKQIPGILRSDRDQTSTRKAI 110 (203)
T ss_dssp --------TTHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHH-TT-TTHHHHHHHHHHHHHHHHHHHH-TT---HHHHHHH
T ss_pred --------hHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCCcchhhHHHHHHHHHHHhCccchhcccChHHHHHHH
Confidence 22356788888899999999999999999988888764 4788888876554 3345899
Q ss_pred HHHHHHHhhCCCChHHHH---HHHHHHHhhhcccccccccchhhhhHHHhcCCHHHHHHHHHHHHhcCCCC---HHHHHH
Q 012143 221 KCFQDLILKDQNHPAALI---NYAALLLCKYGSVLAGAGANTGEGACLDQASAVNVAKECLLAALKADPKA---AHIWAN 294 (470)
Q Consensus 221 ~~~~~~l~~~p~~~~~~~---~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~p~~---~~~~~~ 294 (470)
..|+..+...|++..+-. .+..+.... +..-+.+|..|.+.|.+..|+..++.+++..|+. ..++..
T Consensus 111 ~~~~~li~~yP~S~y~~~A~~~l~~l~~~l-------a~~e~~ia~~Y~~~~~y~aA~~r~~~v~~~yp~t~~~~~al~~ 183 (203)
T PF13525_consen 111 EEFEELIKRYPNSEYAEEAKKRLAELRNRL-------AEHELYIARFYYKRGKYKAAIIRFQYVIENYPDTPAAEEALAR 183 (203)
T ss_dssp HHHHHHHHH-TTSTTHHHHHHHHHHHHHHH-------HHHHHHHHHHHHCTT-HHHHHHHHHHHHHHSTTSHHHHHHHHH
T ss_pred HHHHHHHHHCcCchHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHcccHHHHHHHHHHHHHHCCCCchHHHHHHH
Confidence 999999999998865432 222221111 2334457888999999999999999999999985 457888
Q ss_pred HHHHHHHcCChhHHH
Q 012143 295 LANAYYLTGDHRSSG 309 (470)
Q Consensus 295 la~~~~~~g~~~~A~ 309 (470)
++.+|..+|..+.|.
T Consensus 184 l~~~y~~l~~~~~a~ 198 (203)
T PF13525_consen 184 LAEAYYKLGLKQAAD 198 (203)
T ss_dssp HHHHHHHTT-HHHHH
T ss_pred HHHHHHHhCChHHHH
Confidence 899999999988543
|
|
| >CHL00033 ycf3 photosystem I assembly protein Ycf3 | Back alignment and domain information |
|---|
Probab=99.29 E-value=2.6e-10 Score=91.42 Aligned_cols=130 Identities=13% Similarity=0.176 Sum_probs=101.2
Q ss_pred CcccHHHHHHHHHHhhhcCccc--hHHHHHHHHHHHHcCChHHHHHHHHHHhhcCCCC---hHHHHHHHHHHHHcCCHHH
Q 012143 144 EPEELEEILSKLKESMQSDTRQ--AVVWNTLGLILLKSGRLQSSISVLSSLLAVDPNN---CDCIGNLGIAYFQSGDMEQ 218 (470)
Q Consensus 144 ~~~~~~~A~~~~~~~~~~~p~~--~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~---~~~~~~la~~~~~~g~~~~ 218 (470)
-.+.+..+...+...++..+.+ ...++.+|.++...|++++|+..|++++.+.|+. +.++..+|.++...|++++
T Consensus 11 ~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~g~~~~~~g~~~~A~~~~~~al~l~~~~~~~~~~~~~lg~~~~~~g~~~e 90 (168)
T CHL00033 11 IDKTFTIVADILLRILPTTSGEKEAFTYYRDGMSAQSEGEYAEALQNYYEAMRLEIDPYDRSYILYNIGLIHTSNGEHTK 90 (168)
T ss_pred cccccccchhhhhHhccCCchhHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhccccchhhHHHHHHHHHHHHHcCCHHH
Confidence 3344666777776666555544 6678999999999999999999999999887663 4589999999999999999
Q ss_pred HHHHHHHHHhhCCCChHHHHHHHHHHHhhhcccccccccchhhhhHHHhcCCHH-------HHHHHHHHHHhcCCC
Q 012143 219 SAKCFQDLILKDQNHPAALINYAALLLCKYGSVLAGAGANTGEGACLDQASAVN-------VAKECLLAALKADPK 287 (470)
Q Consensus 219 A~~~~~~~l~~~p~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-------~A~~~~~~~~~~~p~ 287 (470)
|+..+++++.++|.....+..++.++.. +|..+...|+++ +|+.++++++..+|.
T Consensus 91 A~~~~~~Al~~~~~~~~~~~~la~i~~~--------------~~~~~~~~g~~~~A~~~~~~a~~~~~~a~~~~p~ 152 (168)
T CHL00033 91 ALEYYFQALERNPFLPQALNNMAVICHY--------------RGEQAIEQGDSEIAEAWFDQAAEYWKQAIALAPG 152 (168)
T ss_pred HHHHHHHHHHhCcCcHHHHHHHHHHHHH--------------hhHHHHHcccHHHHHHHHHHHHHHHHHHHHhCcc
Confidence 9999999999999999999999988874 344445566655 444444445555554
|
|
| >PF13414 TPR_11: TPR repeat; PDB: 2HO1_B 2FI7_B 2DBA_A 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2PL2_B 3IEG_B 2FBN_A | Back alignment and domain information |
|---|
Probab=99.27 E-value=2e-11 Score=81.53 Aligned_cols=67 Identities=31% Similarity=0.610 Sum_probs=64.9
Q ss_pred chHHHHHHHHHHHHcCChHHHHHHHHHHhhcCCCChHHHHHHHHHHHHcC-CHHHHHHHHHHHHhhCC
Q 012143 165 QAVVWNTLGLILLKSGRLQSSISVLSSLLAVDPNNCDCIGNLGIAYFQSG-DMEQSAKCFQDLILKDQ 231 (470)
Q Consensus 165 ~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~la~~~~~~g-~~~~A~~~~~~~l~~~p 231 (470)
++..|..+|.+++..|++++|+.+|+++++.+|+++.+++.+|.++..+| ++++|++.++++++++|
T Consensus 2 ~a~~~~~~g~~~~~~~~~~~A~~~~~~ai~~~p~~~~~~~~~g~~~~~~~~~~~~A~~~~~~al~l~P 69 (69)
T PF13414_consen 2 NAEAWYNLGQIYFQQGDYEEAIEYFEKAIELDPNNAEAYYNLGLAYMKLGKDYEEAIEDFEKALKLDP 69 (69)
T ss_dssp SHHHHHHHHHHHHHTTHHHHHHHHHHHHHHHSTTHHHHHHHHHHHHHHTTTHHHHHHHHHHHHHHHST
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHhCccHHHHHHHHHHHHHcCc
Confidence 57889999999999999999999999999999999999999999999999 79999999999999988
|
... |
| >KOG1941 consensus Acetylcholine receptor-associated protein of the synapse (rapsyn) [Extracellular structures] | Back alignment and domain information |
|---|
Probab=99.27 E-value=2.7e-09 Score=90.14 Aligned_cols=313 Identities=16% Similarity=0.109 Sum_probs=215.3
Q ss_pred HHHHHHHHHHHhCChhHHHHHHHHHHHHHhhhhcccchhhhHHHHHHhhhccccccccCCCccccccCcccHHHHHHHHH
Q 012143 77 AHFLLGLMYQRLGQPLKAVSSYEKAEEILLRCEADIARPELLSLVQIHHAQCLLPESSGDNSLDKELEPEELEEILSKLK 156 (470)
Q Consensus 77 ~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~ 156 (470)
-...-|.-++...++.+|+..+.+.+....+. ......+ | .+. ....+.|.+++++..--
T Consensus 8 ~q~~~g~~Ly~s~~~~~al~~w~~~L~~l~~~---------~~Rf~~l---G----~l~----~a~s~~g~y~~mL~~a~ 67 (518)
T KOG1941|consen 8 KQIEKGLQLYQSNQTEKALQVWTKVLEKLSDL---------MGRFRVL---G----CLV----TAHSEMGRYKEMLKFAV 67 (518)
T ss_pred HHHHHHHhHhcCchHHHHHHHHHHHHHHHHHH---------HHHHHHh---c----cch----hhhhhhHHHHHHHHHHH
Confidence 44556667778888888988888888753221 1111111 1 111 11445666777766544
Q ss_pred HhhhcCc------cchHHHHHHHHHHHHcCChHHHHHHHHHHhhcCCCCh-----HHHHHHHHHHHHcCCHHHHHHHHHH
Q 012143 157 ESMQSDT------RQAVVWNTLGLILLKSGRLQSSISVLSSLLAVDPNNC-----DCIGNLGIAYFQSGDMEQSAKCFQD 225 (470)
Q Consensus 157 ~~~~~~p------~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~-----~~~~~la~~~~~~g~~~~A~~~~~~ 225 (470)
..+.... ...+++.+++..+...-++.+++.+-+..+.+....+ .+...+|..+..++.++++++.|+.
T Consensus 68 sqi~~a~~~~ds~~~~ea~lnlar~~e~l~~f~kt~~y~k~~l~lpgt~~~~~~gq~~l~~~~Ahlgls~fq~~Lesfe~ 147 (518)
T KOG1941|consen 68 SQIDTARELEDSDFLLEAYLNLARSNEKLCEFHKTISYCKTCLGLPGTRAGQLGGQVSLSMGNAHLGLSVFQKALESFEK 147 (518)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHhcCCCCCcccccchhhhhHHHHhhhHHHHHHHHHHHHH
Confidence 3333211 1245788999999999999999999998887644333 5677799999999999999999999
Q ss_pred HHhhCCCChHHHHHHHHHHHhhhcccccccccchhhhhHHHhcCCHHHHHHHHHHHHhcCCC----------CHHHHHHH
Q 012143 226 LILKDQNHPAALINYAALLLCKYGSVLAGAGANTGEGACLDQASAVNVAKECLLAALKADPK----------AAHIWANL 295 (470)
Q Consensus 226 ~l~~~p~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~p~----------~~~~~~~l 295 (470)
+++...++.+.... ......+|..+.+..++++|.-+..++.++... ...+.+.+
T Consensus 148 A~~~A~~~~D~~LE---------------lqvcv~Lgslf~~l~D~~Kal~f~~kA~~lv~s~~l~d~~~kyr~~~lyhm 212 (518)
T KOG1941|consen 148 ALRYAHNNDDAMLE---------------LQVCVSLGSLFAQLKDYEKALFFPCKAAELVNSYGLKDWSLKYRAMSLYHM 212 (518)
T ss_pred HHHHhhccCCceee---------------eehhhhHHHHHHHHHhhhHHhhhhHhHHHHHHhcCcCchhHHHHHHHHHHH
Confidence 99876554443222 223334566777899999999999999887433 23467888
Q ss_pred HHHHHHcCChhHHHHHHHHHHhcCCCcccHHHHHHHHHHHHhhhccCchHHhhhhHHHHHHHhhcCCCCCCCcHHHHHHH
Q 012143 296 ANAYYLTGDHRSSGKCLEKAAKLEPNCMSTRYAVAVSRIKDAERSQEPTEQLSWAGNEMASILREGDPVQIEPPIAWAGF 375 (470)
Q Consensus 296 a~~~~~~g~~~~A~~~~~~a~~~~p~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l 375 (470)
+..+..+|..-+|.++.+++.++.-...+- +........+
T Consensus 213 aValR~~G~LgdA~e~C~Ea~klal~~Gdr----------------------------------------a~~arc~~~~ 252 (518)
T KOG1941|consen 213 AVALRLLGRLGDAMECCEEAMKLALQHGDR----------------------------------------ALQARCLLCF 252 (518)
T ss_pred HHHHHHhcccccHHHHHHHHHHHHHHhCCh----------------------------------------HHHHHHHHHH
Confidence 999999999999999999988764322110 0112356678
Q ss_pred HHHHhccccHHHHHHHHHHHhcc--------hhhhhHhhHHHHHHHhccHHH-----HHHHHHHHHhcCCCc------HH
Q 012143 376 AAVQKTHHEVAAAFETEENELSK--------MEECAGAGESAFLDQASAVNV-----AKECLLAALKADPKA------AH 436 (470)
Q Consensus 376 ~~~~~~~~~~~~A~~~~~~~~~~--------~~~~~~~~l~~~~~~~~~~~~-----A~~~~~~al~~~p~~------~~ 436 (470)
|++|...|+.+.|...|+.+... ....+..+.+.++....-..+ |+++-++++++...- ..
T Consensus 253 aDIyR~~gd~e~af~rYe~Am~~m~~~gdrmgqv~al~g~Akc~~~~r~~~k~~~Crale~n~r~levA~~IG~K~~vlK 332 (518)
T KOG1941|consen 253 ADIYRSRGDLERAFRRYEQAMGTMASLGDRMGQVEALDGAAKCLETLRLQNKICNCRALEFNTRLLEVASSIGAKLSVLK 332 (518)
T ss_pred HHHHHhcccHhHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHhhcccccchhHHHHHHHHHHHHhhhhHHHHH
Confidence 88999999999998888885542 223556677777766555555 888888888764332 35
Q ss_pred HHHHHHHHHHHcCChHHHHHHHHHHHHh
Q 012143 437 IWANLANAYYLTGDHRSSGKCLEKVLMV 464 (470)
Q Consensus 437 ~~~~la~~~~~~g~~~~A~~~~~~al~~ 464 (470)
.+..++.+|..+|..++=...+.++-+.
T Consensus 333 ~hcrla~iYrs~gl~d~~~~h~~ra~~~ 360 (518)
T KOG1941|consen 333 LHCRLASIYRSKGLQDELRAHVVRAHEC 360 (518)
T ss_pred HHHHHHHHHHhccchhHHHHHHHHHHHH
Confidence 6788999999999888877777665443
|
|
| >PF13525 YfiO: Outer membrane lipoprotein; PDB: 3TGO_A 3Q5M_A 2YHC_A | Back alignment and domain information |
|---|
Probab=99.27 E-value=1.8e-09 Score=89.01 Aligned_cols=186 Identities=20% Similarity=0.196 Sum_probs=123.3
Q ss_pred chHHHHHHHHHHHHcCChHHHHHHHHHHhhcCCCC---hHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCChH---HHH
Q 012143 165 QAVVWNTLGLILLKSGRLQSSISVLSSLLAVDPNN---CDCIGNLGIAYFQSGDMEQSAKCFQDLILKDQNHPA---ALI 238 (470)
Q Consensus 165 ~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~---~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~---~~~ 238 (470)
.+..++..|..++..|+|.+|+..|++++...|.+ +.+.+.+|.+++..|++++|+..+++.++..|+++. +++
T Consensus 4 ~~~~lY~~a~~~~~~g~y~~Ai~~f~~l~~~~P~s~~a~~A~l~la~a~y~~~~y~~A~~~~~~fi~~yP~~~~~~~A~Y 83 (203)
T PF13525_consen 4 TAEALYQKALEALQQGDYEEAIKLFEKLIDRYPNSPYAPQAQLMLAYAYYKQGDYEEAIAAYERFIKLYPNSPKADYALY 83 (203)
T ss_dssp -HHHHHHHHHHHHHCT-HHHHHHHHHHHHHH-TTSTTHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHH-TT-TTHHHHHH
T ss_pred CHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCCcchhhHHH
Confidence 35678888999999999999999999998887765 567888999999999999999999999988888764 344
Q ss_pred HHHHHHHhhhcccccccccchhhhhHHHhcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCChhHHHHHHHHHHhc
Q 012143 239 NYAALLLCKYGSVLAGAGANTGEGACLDQASAVNVAKECLLAALKADPKAAHIWANLANAYYLTGDHRSSGKCLEKAAKL 318 (470)
Q Consensus 239 ~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~ 318 (470)
.+|.++.. . ....+ ......+...+|+..|+..+..
T Consensus 84 ~~g~~~~~---------------------~---------~~~~~--------------~~~~D~~~~~~A~~~~~~li~~ 119 (203)
T PF13525_consen 84 MLGLSYYK---------------------Q---------IPGIL--------------RSDRDQTSTRKAIEEFEELIKR 119 (203)
T ss_dssp HHHHHHHH---------------------H---------HHHHH---------------TT---HHHHHHHHHHHHHHHH
T ss_pred HHHHHHHH---------------------h---------Cccch--------------hcccChHHHHHHHHHHHHHHHH
Confidence 44443331 0 00000 2234455677899999999999
Q ss_pred CCCcccHHHHHHHHHHHHhhhccCchHHhhhhHHHHHHHhhcCCCCCCCcHHHHHHHHHHHhccccHHHHHHHHHHHhcc
Q 012143 319 EPNCMSTRYAVAVSRIKDAERSQEPTEQLSWAGNEMASILREGDPVQIEPPIAWAGFAAVQKTHHEVAAAFETEENELSK 398 (470)
Q Consensus 319 ~p~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~ 398 (470)
.|++..+...... + ..+ ..
T Consensus 120 yP~S~y~~~A~~~--l-----------------------------------------~~l------------------~~ 138 (203)
T PF13525_consen 120 YPNSEYAEEAKKR--L-----------------------------------------AEL------------------RN 138 (203)
T ss_dssp -TTSTTHHHHHHH--H-----------------------------------------HHH------------------HH
T ss_pred CcCchHHHHHHHH--H-----------------------------------------HHH------------------HH
Confidence 9997643321110 0 000 00
Q ss_pred hhhhhHhhHHHHHHHhccHHHHHHHHHHHHhcCCCc---HHHHHHHHHHHHHcCChHHHH
Q 012143 399 MEECAGAGESAFLDQASAVNVAKECLLAALKADPKA---AHIWANLANAYYLTGDHRSSG 455 (470)
Q Consensus 399 ~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~p~~---~~~~~~la~~~~~~g~~~~A~ 455 (470)
.-..--+.+|..|.+.|.+..|+..++.+++..|+. .+++..++.+|.++|..+.|.
T Consensus 139 ~la~~e~~ia~~Y~~~~~y~aA~~r~~~v~~~yp~t~~~~~al~~l~~~y~~l~~~~~a~ 198 (203)
T PF13525_consen 139 RLAEHELYIARFYYKRGKYKAAIIRFQYVIENYPDTPAAEEALARLAEAYYKLGLKQAAD 198 (203)
T ss_dssp HHHHHHHHHHHHHHCTT-HHHHHHHHHHHHHHSTTSHHHHHHHHHHHHHHHHTT-HHHHH
T ss_pred HHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHCCCCchHHHHHHHHHHHHHHhCChHHHH
Confidence 011122345668888999999999999999999987 467899999999999988554
|
|
| >COG4235 Cytochrome c biogenesis factor [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=99.27 E-value=3e-10 Score=94.52 Aligned_cols=124 Identities=17% Similarity=0.231 Sum_probs=114.1
Q ss_pred ccHHHHHHHHHHhhhcCccchHHHHHHHHHHHHcCChHHHHHHHHHHhhcCCCChHHHHHHHHHHHHcC---CHHHHHHH
Q 012143 146 EELEEILSKLKESMQSDTRQAVVWNTLGLILLKSGRLQSSISVLSSLLAVDPNNCDCIGNLGIAYFQSG---DMEQSAKC 222 (470)
Q Consensus 146 ~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~la~~~~~~g---~~~~A~~~ 222 (470)
...+.-+.-++..+..+|+|++-|..||.+|+.+|++..|...|.+++++.|++++.+..+|.+++.+. ...++...
T Consensus 136 ~~~~~l~a~Le~~L~~nP~d~egW~~Lg~~ym~~~~~~~A~~AY~~A~rL~g~n~~~~~g~aeaL~~~a~~~~ta~a~~l 215 (287)
T COG4235 136 QEMEALIARLETHLQQNPGDAEGWDLLGRAYMALGRASDALLAYRNALRLAGDNPEILLGLAEALYYQAGQQMTAKARAL 215 (287)
T ss_pred ccHHHHHHHHHHHHHhCCCCchhHHHHHHHHHHhcchhHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcCCcccHHHHHH
Confidence 446788889999999999999999999999999999999999999999999999999999999987654 46789999
Q ss_pred HHHHHhhCCCChHHHHHHHHHHHhhhcccccccccchhhhhHHHhcCCHHHHHHHHHHHHhcCCCCHH
Q 012143 223 FQDLILKDQNHPAALINYAALLLCKYGSVLAGAGANTGEGACLDQASAVNVAKECLLAALKADPKAAH 290 (470)
Q Consensus 223 ~~~~l~~~p~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~p~~~~ 290 (470)
+++++..+|.+..+.+.++..++ +.|+|.+|+..++..++..|.+..
T Consensus 216 l~~al~~D~~~iral~lLA~~af---------------------e~g~~~~A~~~Wq~lL~~lp~~~~ 262 (287)
T COG4235 216 LRQALALDPANIRALSLLAFAAF---------------------EQGDYAEAAAAWQMLLDLLPADDP 262 (287)
T ss_pred HHHHHhcCCccHHHHHHHHHHHH---------------------HcccHHHHHHHHHHHHhcCCCCCc
Confidence 99999999999999999998887 799999999999999999887543
|
|
| >TIGR02795 tol_pal_ybgF tol-pal system protein YbgF | Back alignment and domain information |
|---|
Probab=99.26 E-value=2.4e-10 Score=86.23 Aligned_cols=107 Identities=23% Similarity=0.336 Sum_probs=88.9
Q ss_pred hHHHHHHHHHHHHcCChHHHHHHHHHHhhcCCCC---hHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCC---hHHHHH
Q 012143 166 AVVWNTLGLILLKSGRLQSSISVLSSLLAVDPNN---CDCIGNLGIAYFQSGDMEQSAKCFQDLILKDQNH---PAALIN 239 (470)
Q Consensus 166 ~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~---~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~---~~~~~~ 239 (470)
++.++.+|..+...|++++|+..|.+++..+|++ +.+++.+|.++...|++++|+..|++++...|++ +.++..
T Consensus 2 ~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~~~~ 81 (119)
T TIGR02795 2 EEAYYDAALLVLKAGDYADAIQAFQAFLKKYPKSTYAPNAHYWLGEAYYAQGKYADAAKAFLAVVKKYPKSPKAPDALLK 81 (119)
T ss_pred cHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCccccHHHHHHHHHHHHhhccHHHHHHHHHHHHHHCCCCCcccHHHHH
Confidence 4577888999999999999999999999888776 5688889999999999999999999999888875 456666
Q ss_pred HHHHHHhhhcccccccccchhhhhHHHhcCCHHHHHHHHHHHHhcCCCCHHHHH
Q 012143 240 YAALLLCKYGSVLAGAGANTGEGACLDQASAVNVAKECLLAALKADPKAAHIWA 293 (470)
Q Consensus 240 l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~ 293 (470)
++.++. ..|++++|+.++.+++...|++..+..
T Consensus 82 ~~~~~~---------------------~~~~~~~A~~~~~~~~~~~p~~~~~~~ 114 (119)
T TIGR02795 82 LGMSLQ---------------------ELGDKEKAKATLQQVIKRYPGSSAAKL 114 (119)
T ss_pred HHHHHH---------------------HhCChHHHHHHHHHHHHHCcCChhHHH
Confidence 666665 688999999999999999888765543
|
Members of this protein family are the product of one of seven genes regularly clustered in operons to encode the proteins of the tol-pal system, which is critical for maintaining the integrity of the bacterial outer membrane. The gene for this periplasmic protein has been designated orf2 and ybgF. All members of the seed alignment were from unique tol-pal gene regions from completed bacterial genomes. The architecture of this protein is a signal sequence, a low-complexity region usually rich in Asn and Gln, a well-conserved region with tandem repeats that resemble the tetratricopeptide (TPR) repeat, involved in protein-protein interaction. |
| >PRK10866 outer membrane biogenesis protein BamD; Provisional | Back alignment and domain information |
|---|
Probab=99.25 E-value=6.3e-09 Score=87.84 Aligned_cols=198 Identities=15% Similarity=0.106 Sum_probs=118.0
Q ss_pred chHHHHHHHHHHHHcCChHHHHHHHHHHhhcCCCChHH---HHHHHHHHHHcCCHHHHHHHHHHHHhhCCCChHH---HH
Q 012143 165 QAVVWNTLGLILLKSGRLQSSISVLSSLLAVDPNNCDC---IGNLGIAYFQSGDMEQSAKCFQDLILKDQNHPAA---LI 238 (470)
Q Consensus 165 ~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~---~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~---~~ 238 (470)
.+..++..|..+...|++++|+..|++++...|..+.+ .+.+|.++++.+++++|+..+++.++.+|+++.+ ++
T Consensus 31 ~~~~~Y~~A~~~~~~g~y~~Ai~~f~~l~~~yP~s~~a~~a~l~la~ayy~~~~y~~A~~~~e~fi~~~P~~~~~~~a~Y 110 (243)
T PRK10866 31 PPSEIYATAQQKLQDGNWKQAITQLEALDNRYPFGPYSQQVQLDLIYAYYKNADLPLAQAAIDRFIRLNPTHPNIDYVLY 110 (243)
T ss_pred CHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCcCCCchHHHHH
Confidence 45556666777777777777777777777776666443 3666777777777777777777777776666533 22
Q ss_pred HHHHHHHhhhcccccccccchhhhhHHHhcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCChhHHHHHHHHHHhc
Q 012143 239 NYAALLLCKYGSVLAGAGANTGEGACLDQASAVNVAKECLLAALKADPKAAHIWANLANAYYLTGDHRSSGKCLEKAAKL 318 (470)
Q Consensus 239 ~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~ 318 (470)
.+|.+.. ..+ ...+..-..++ .....+....+|+..|++.++.
T Consensus 111 ~~g~~~~---------------------~~~-----~~~~~~~~~~~-----------~~~rD~~~~~~A~~~~~~li~~ 153 (243)
T PRK10866 111 MRGLTNM---------------------ALD-----DSALQGFFGVD-----------RSDRDPQHARAAFRDFSKLVRG 153 (243)
T ss_pred HHHHhhh---------------------hcc-----hhhhhhccCCC-----------ccccCHHHHHHHHHHHHHHHHH
Confidence 2222211 000 00000000000 0111122245788999999999
Q ss_pred CCCcccHHHHHHHHHHHHhhhccCchHHhhhhHHHHHHHhhcCCCCCCCcHHHHHHHHHHHhccccHHHHHHHHHHHhcc
Q 012143 319 EPNCMSTRYAVAVSRIKDAERSQEPTEQLSWAGNEMASILREGDPVQIEPPIAWAGFAAVQKTHHEVAAAFETEENELSK 398 (470)
Q Consensus 319 ~p~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~ 398 (470)
.|+..-+... . ..+..+...
T Consensus 154 yP~S~ya~~A--~-----------------------------------------~rl~~l~~~----------------- 173 (243)
T PRK10866 154 YPNSQYTTDA--T-----------------------------------------KRLVFLKDR----------------- 173 (243)
T ss_pred CcCChhHHHH--H-----------------------------------------HHHHHHHHH-----------------
Confidence 9986432211 1 111111000
Q ss_pred hhhhhHhhHHHHHHHhccHHHHHHHHHHHHhcCCCc---HHHHHHHHHHHHHcCChHHHHHHHHH
Q 012143 399 MEECAGAGESAFLDQASAVNVAKECLLAALKADPKA---AHIWANLANAYYLTGDHRSSGKCLEK 460 (470)
Q Consensus 399 ~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~p~~---~~~~~~la~~~~~~g~~~~A~~~~~~ 460 (470)
-..--+.+|..|.+.|.|..|+.-++.+++..|+. .++++.++..|..+|..++|......
T Consensus 174 -la~~e~~ia~~Y~~~~~y~AA~~r~~~v~~~Yp~t~~~~eal~~l~~ay~~lg~~~~a~~~~~~ 237 (243)
T PRK10866 174 -LAKYELSVAEYYTKRGAYVAVVNRVEQMLRDYPDTQATRDALPLMENAYRQLQLNAQADKVAKI 237 (243)
T ss_pred -HHHHHHHHHHHHHHcCchHHHHHHHHHHHHHCCCCchHHHHHHHHHHHHHHcCChHHHHHHHHH
Confidence 01112345667888899999999999999988875 68899999999999999999887653
|
|
| >PRK02603 photosystem I assembly protein Ycf3; Provisional | Back alignment and domain information |
|---|
Probab=99.23 E-value=4.4e-10 Score=90.40 Aligned_cols=84 Identities=18% Similarity=0.356 Sum_probs=76.1
Q ss_pred CccchHHHHHHHHHHHHcCChHHHHHHHHHHhhcCCCC---hHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCChHHHH
Q 012143 162 DTRQAVVWNTLGLILLKSGRLQSSISVLSSLLAVDPNN---CDCIGNLGIAYFQSGDMEQSAKCFQDLILKDQNHPAALI 238 (470)
Q Consensus 162 ~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~---~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~ 238 (470)
.|....+++.+|..+...|++++|+.+|+++++..|+. ..++..+|.++...|++++|+..+++++...|.+...+.
T Consensus 31 ~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~ 110 (172)
T PRK02603 31 KAKEAFVYYRDGMSAQADGEYAEALENYEEALKLEEDPNDRSYILYNMGIIYASNGEHDKALEYYHQALELNPKQPSALN 110 (172)
T ss_pred HhhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhccchHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcccHHHHH
Confidence 34557789999999999999999999999999887654 468999999999999999999999999999999999998
Q ss_pred HHHHHHH
Q 012143 239 NYAALLL 245 (470)
Q Consensus 239 ~l~~~~~ 245 (470)
.+|.++.
T Consensus 111 ~lg~~~~ 117 (172)
T PRK02603 111 NIAVIYH 117 (172)
T ss_pred HHHHHHH
Confidence 8888887
|
|
| >TIGR02795 tol_pal_ybgF tol-pal system protein YbgF | Back alignment and domain information |
|---|
Probab=99.23 E-value=4.4e-10 Score=84.77 Aligned_cols=105 Identities=18% Similarity=0.238 Sum_probs=93.9
Q ss_pred hHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCC---hHHHHHHHHHHHhhhcccccccccchhhhhHHHhcCCHHHHHH
Q 012143 200 CDCIGNLGIAYFQSGDMEQSAKCFQDLILKDQNH---PAALINYAALLLCKYGSVLAGAGANTGEGACLDQASAVNVAKE 276 (470)
Q Consensus 200 ~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~---~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~ 276 (470)
++.++.+|..+...|++++|+..|.+++..+|++ ..+++.+|.++. ..|++++|+.
T Consensus 2 ~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~---------------------~~~~~~~A~~ 60 (119)
T TIGR02795 2 EEAYYDAALLVLKAGDYADAIQAFQAFLKKYPKSTYAPNAHYWLGEAYY---------------------AQGKYADAAK 60 (119)
T ss_pred cHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCccccHHHHHHHHHHHH---------------------hhccHHHHHH
Confidence 4678999999999999999999999999999876 456666777766 7999999999
Q ss_pred HHHHHHhcCCCC---HHHHHHHHHHHHHcCChhHHHHHHHHHHhcCCCcccH
Q 012143 277 CLLAALKADPKA---AHIWANLANAYYLTGDHRSSGKCLEKAAKLEPNCMST 325 (470)
Q Consensus 277 ~~~~~~~~~p~~---~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~p~~~~~ 325 (470)
.|++++...|++ +.++..+|.++...|++++|+.++++++...|++..+
T Consensus 61 ~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~ 112 (119)
T TIGR02795 61 AFLAVVKKYPKSPKAPDALLKLGMSLQELGDKEKAKATLQQVIKRYPGSSAA 112 (119)
T ss_pred HHHHHHHHCCCCCcccHHHHHHHHHHHHhCChHHHHHHHHHHHHHCcCChhH
Confidence 999999998885 6789999999999999999999999999999997653
|
Members of this protein family are the product of one of seven genes regularly clustered in operons to encode the proteins of the tol-pal system, which is critical for maintaining the integrity of the bacterial outer membrane. The gene for this periplasmic protein has been designated orf2 and ybgF. All members of the seed alignment were from unique tol-pal gene regions from completed bacterial genomes. The architecture of this protein is a signal sequence, a low-complexity region usually rich in Asn and Gln, a well-conserved region with tandem repeats that resemble the tetratricopeptide (TPR) repeat, involved in protein-protein interaction. |
| >PF13414 TPR_11: TPR repeat; PDB: 2HO1_B 2FI7_B 2DBA_A 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2PL2_B 3IEG_B 2FBN_A | Back alignment and domain information |
|---|
Probab=99.21 E-value=6.5e-11 Score=79.07 Aligned_cols=66 Identities=26% Similarity=0.182 Sum_probs=62.2
Q ss_pred hhhHhhHHHHHHHhccHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHcC-ChHHHHHHHHHHHHhhc
Q 012143 401 ECAGAGESAFLDQASAVNVAKECLLAALKADPKAAHIWANLANAYYLTG-DHRSSGKCLEKVLMVYC 466 (470)
Q Consensus 401 ~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g-~~~~A~~~~~~al~~~~ 466 (470)
+..|..+|.++...|++++|+..|+++++.+|+++.+|+++|.++..+| ++++|+.+|++++++-|
T Consensus 3 a~~~~~~g~~~~~~~~~~~A~~~~~~ai~~~p~~~~~~~~~g~~~~~~~~~~~~A~~~~~~al~l~P 69 (69)
T PF13414_consen 3 AEAWYNLGQIYFQQGDYEEAIEYFEKAIELDPNNAEAYYNLGLAYMKLGKDYEEAIEDFEKALKLDP 69 (69)
T ss_dssp HHHHHHHHHHHHHTTHHHHHHHHHHHHHHHSTTHHHHHHHHHHHHHHTTTHHHHHHHHHHHHHHHST
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHhCccHHHHHHHHHHHHHcCc
Confidence 4568889999999999999999999999999999999999999999999 79999999999999865
|
... |
| >PF12895 Apc3: Anaphase-promoting complex, cyclosome, subunit 3; PDB: 3KAE_D 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2XPI_A 3ULQ_A | Back alignment and domain information |
|---|
Probab=99.21 E-value=4.9e-11 Score=83.00 Aligned_cols=81 Identities=19% Similarity=0.314 Sum_probs=73.0
Q ss_pred cccHHHHHHHHHHhhhcCcc--chHHHHHHHHHHHHcCChHHHHHHHHHHhhcCCCChHHHHHHHHHHHHcCCHHHHHHH
Q 012143 145 PEELEEILSKLKESMQSDTR--QAVVWNTLGLILLKSGRLQSSISVLSSLLAVDPNNCDCIGNLGIAYFQSGDMEQSAKC 222 (470)
Q Consensus 145 ~~~~~~A~~~~~~~~~~~p~--~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~la~~~~~~g~~~~A~~~ 222 (470)
+|++++|+..+++++..+|. +...++.+|.++++.|++++|+..+++ ...+|.++...+.+|.++..+|++++|++.
T Consensus 2 ~~~y~~Ai~~~~k~~~~~~~~~~~~~~~~la~~~~~~~~y~~A~~~~~~-~~~~~~~~~~~~l~a~~~~~l~~y~eAi~~ 80 (84)
T PF12895_consen 2 QGNYENAIKYYEKLLELDPTNPNSAYLYNLAQCYFQQGKYEEAIELLQK-LKLDPSNPDIHYLLARCLLKLGKYEEAIKA 80 (84)
T ss_dssp TT-HHHHHHHHHHHHHHHCGTHHHHHHHHHHHHHHHTTHHHHHHHHHHC-HTHHHCHHHHHHHHHHHHHHTT-HHHHHHH
T ss_pred CccHHHHHHHHHHHHHHCCCChhHHHHHHHHHHHHHCCCHHHHHHHHHH-hCCCCCCHHHHHHHHHHHHHhCCHHHHHHH
Confidence 57899999999999999995 566788899999999999999999999 888888889999999999999999999999
Q ss_pred HHHH
Q 012143 223 FQDL 226 (470)
Q Consensus 223 ~~~~ 226 (470)
++++
T Consensus 81 l~~~ 84 (84)
T PF12895_consen 81 LEKA 84 (84)
T ss_dssp HHHH
T ss_pred HhcC
Confidence 9875
|
|
| >PF09976 TPR_21: Tetratricopeptide repeat; InterPro: IPR018704 This domain, found in various hypothetical prokaryotic proteins, has no known function | Back alignment and domain information |
|---|
Probab=99.21 E-value=9.7e-10 Score=85.52 Aligned_cols=117 Identities=13% Similarity=0.088 Sum_probs=93.6
Q ss_pred CcccHHHHHHHHHHhhhcCccc---hHHHHHHHHHHHHcCChHHHHHHHHHHhhcCCCC---hHHHHHHHHHHHHcCCHH
Q 012143 144 EPEELEEILSKLKESMQSDTRQ---AVVWNTLGLILLKSGRLQSSISVLSSLLAVDPNN---CDCIGNLGIAYFQSGDME 217 (470)
Q Consensus 144 ~~~~~~~A~~~~~~~~~~~p~~---~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~---~~~~~~la~~~~~~g~~~ 217 (470)
..++...+...+++.+..+|+. ..+.+.+|.+++..|++++|...|++++...|+. +.+...+|.++...|+++
T Consensus 23 ~~~~~~~~~~~~~~l~~~~~~s~ya~~A~l~lA~~~~~~g~~~~A~~~l~~~~~~~~d~~l~~~a~l~LA~~~~~~~~~d 102 (145)
T PF09976_consen 23 QAGDPAKAEAAAEQLAKDYPSSPYAALAALQLAKAAYEQGDYDEAKAALEKALANAPDPELKPLARLRLARILLQQGQYD 102 (145)
T ss_pred HCCCHHHHHHHHHHHHHHCCCChHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHhhCCCHHHHHHHHHHHHHHHHHcCCHH
Confidence 3566788888899999988887 5678889999999999999999999999987654 457889999999999999
Q ss_pred HHHHHHHHHHhhCCCChHHHHHHHHHHHhhhcccccccccchhhhhHHHhcCCHHHHHHHHHHHH
Q 012143 218 QSAKCFQDLILKDQNHPAALINYAALLLCKYGSVLAGAGANTGEGACLDQASAVNVAKECLLAAL 282 (470)
Q Consensus 218 ~A~~~~~~~l~~~p~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~ 282 (470)
+|+..++.. ...+..+..+..+| .++...|++++|+..|++++
T Consensus 103 ~Al~~L~~~-~~~~~~~~~~~~~G---------------------di~~~~g~~~~A~~~y~~Al 145 (145)
T PF09976_consen 103 EALATLQQI-PDEAFKALAAELLG---------------------DIYLAQGDYDEARAAYQKAL 145 (145)
T ss_pred HHHHHHHhc-cCcchHHHHHHHHH---------------------HHHHHCCCHHHHHHHHHHhC
Confidence 999999763 22333334444444 45558999999999999874
|
|
| >PF13432 TPR_16: Tetratricopeptide repeat; PDB: 3CVP_A 3CVL_A 3CVQ_A 3CV0_A 2GW1_B 3CVN_A 3QKY_A 2PL2_B | Back alignment and domain information |
|---|
Probab=99.19 E-value=1.1e-10 Score=76.73 Aligned_cols=65 Identities=22% Similarity=0.394 Sum_probs=57.9
Q ss_pred HHHHHHHHHcCChHHHHHHHHHHhhcCCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCh
Q 012143 170 NTLGLILLKSGRLQSSISVLSSLLAVDPNNCDCIGNLGIAYFQSGDMEQSAKCFQDLILKDQNHP 234 (470)
Q Consensus 170 ~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~ 234 (470)
+.+|..++..|++++|+..|+++++.+|+++.+++.+|.++..+|++++|+..|+++++.+|+++
T Consensus 1 ~~~a~~~~~~g~~~~A~~~~~~~l~~~P~~~~a~~~lg~~~~~~g~~~~A~~~~~~a~~~~P~~p 65 (65)
T PF13432_consen 1 YALARALYQQGDYDEAIAAFEQALKQDPDNPEAWYLLGRILYQQGRYDEALAYYERALELDPDNP 65 (65)
T ss_dssp HHHHHHHHHCTHHHHHHHHHHHHHCCSTTHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHHSTT-H
T ss_pred ChHHHHHHHcCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCcCCC
Confidence 35788999999999999999999999999999999999999999999999999999999999875
|
|
| >PRK10153 DNA-binding transcriptional activator CadC; Provisional | Back alignment and domain information |
|---|
Probab=99.18 E-value=2.1e-09 Score=100.52 Aligned_cols=142 Identities=16% Similarity=0.161 Sum_probs=115.4
Q ss_pred CccchHHH--HHHHHHHHHcCC---hHHHHHHHHHHhhcCCCChHHHHHHHHHHHHcC--------CHHHHHHHHHHHHh
Q 012143 162 DTRQAVVW--NTLGLILLKSGR---LQSSISVLSSLLAVDPNNCDCIGNLGIAYFQSG--------DMEQSAKCFQDLIL 228 (470)
Q Consensus 162 ~p~~~~~~--~~l~~~~~~~~~---~~~A~~~~~~a~~~~~~~~~~~~~la~~~~~~g--------~~~~A~~~~~~~l~ 228 (470)
.|.++.+| +..|.-+...++ ...|+.+|+++++++|++..++..++.++.... +...+....++++.
T Consensus 333 ~~~~~~Ay~~~lrg~~~~~~~~~~~~~~A~~lle~Ai~ldP~~a~a~A~la~~~~~~~~~~~~~~~~l~~a~~~~~~a~a 412 (517)
T PRK10153 333 LPHQGAALTLFYQAHHYLNSGDAKSLNKASDLLEEILKSEPDFTYAQAEKALADIVRHSQQPLDEKQLAALSTELDNIVA 412 (517)
T ss_pred CCCCHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHHHhcCCccHHHHHHHHHHHHHhhh
Confidence 35555544 456766766554 789999999999999999999999988876542 24456666666665
Q ss_pred h--CCCChHHHHHHHHHHHhhhcccccccccchhhhhHHHhcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCChh
Q 012143 229 K--DQNHPAALINYAALLLCKYGSVLAGAGANTGEGACLDQASAVNVAKECLLAALKADPKAAHIWANLANAYYLTGDHR 306 (470)
Q Consensus 229 ~--~p~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~la~~~~~~g~~~ 306 (470)
+ +|.++.++..++.... ..|++++|...+++++.++| +..+|..+|.++...|+++
T Consensus 413 l~~~~~~~~~~~ala~~~~---------------------~~g~~~~A~~~l~rAl~L~p-s~~a~~~lG~~~~~~G~~~ 470 (517)
T PRK10153 413 LPELNVLPRIYEILAVQAL---------------------VKGKTDEAYQAINKAIDLEM-SWLNYVLLGKVYELKGDNR 470 (517)
T ss_pred cccCcCChHHHHHHHHHHH---------------------hcCCHHHHHHHHHHHHHcCC-CHHHHHHHHHHHHHcCCHH
Confidence 4 6777777777776665 58999999999999999999 4889999999999999999
Q ss_pred HHHHHHHHHHhcCCCcccH
Q 012143 307 SSGKCLEKAAKLEPNCMST 325 (470)
Q Consensus 307 ~A~~~~~~a~~~~p~~~~~ 325 (470)
+|++.|++++.++|.++..
T Consensus 471 eA~~~~~~A~~L~P~~pt~ 489 (517)
T PRK10153 471 LAADAYSTAFNLRPGENTL 489 (517)
T ss_pred HHHHHHHHHHhcCCCCchH
Confidence 9999999999999998853
|
|
| >PF09976 TPR_21: Tetratricopeptide repeat; InterPro: IPR018704 This domain, found in various hypothetical prokaryotic proteins, has no known function | Back alignment and domain information |
|---|
Probab=99.18 E-value=2.7e-09 Score=83.02 Aligned_cols=118 Identities=18% Similarity=0.205 Sum_probs=98.5
Q ss_pred HHcCChHHHHHHHHHHhhcCCCC---hHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCh---HHHHHHHHHHHhhhcc
Q 012143 177 LKSGRLQSSISVLSSLLAVDPNN---CDCIGNLGIAYFQSGDMEQSAKCFQDLILKDQNHP---AALINYAALLLCKYGS 250 (470)
Q Consensus 177 ~~~~~~~~A~~~~~~a~~~~~~~---~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~---~~~~~l~~~~~~~~~~ 250 (470)
...+++..+...++..+...|+. ..+.+.+|.+++..|++++|...|+.++...|+.. .+...++.++
T Consensus 22 ~~~~~~~~~~~~~~~l~~~~~~s~ya~~A~l~lA~~~~~~g~~~~A~~~l~~~~~~~~d~~l~~~a~l~LA~~~------ 95 (145)
T PF09976_consen 22 LQAGDPAKAEAAAEQLAKDYPSSPYAALAALQLAKAAYEQGDYDEAKAALEKALANAPDPELKPLARLRLARIL------ 95 (145)
T ss_pred HHCCCHHHHHHHHHHHHHHCCCChHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHhhCCCHHHHHHHHHHHHHHH------
Confidence 36889999999999999999988 56788899999999999999999999999776542 2344445444
Q ss_pred cccccccchhhhhHHHhcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCChhHHHHHHHHHH
Q 012143 251 VLAGAGANTGEGACLDQASAVNVAKECLLAALKADPKAAHIWANLANAYYLTGDHRSSGKCLEKAA 316 (470)
Q Consensus 251 ~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~a~ 316 (470)
...|++++|+..++. +...+-.+.++..+|.++...|++++|+..|++++
T Consensus 96 ---------------~~~~~~d~Al~~L~~-~~~~~~~~~~~~~~Gdi~~~~g~~~~A~~~y~~Al 145 (145)
T PF09976_consen 96 ---------------LQQGQYDEALATLQQ-IPDEAFKALAAELLGDIYLAQGDYDEARAAYQKAL 145 (145)
T ss_pred ---------------HHcCCHHHHHHHHHh-ccCcchHHHHHHHHHHHHHHCCCHHHHHHHHHHhC
Confidence 489999999999976 33445567889999999999999999999999875
|
|
| >cd00189 TPR Tetratricopeptide repeat domain; typically contains 34 amino acids [WLF]-X(2)-[LIM]-[GAS]-X(2)-[YLF]-X(8)-[ASE]-X(3)-[FYL]-X(2)-[ASL]-X(4)-[PKE] is the consensus sequence; found in a variety of organisms including bacteria, cyanobacteria, yeast, fungi, plants, and humans in various subcellular locations; involved in a variety of functions including protein-protein interactions, but common features in the interaction partners have not been defined; involved in chaperone, cell-cycle, transciption, and protein transport complexes; the number of TPR motifs varies among proteins (1,3-11,13 15,16,19); 5-6 tandem repeats generate a right-handed helical structure with an amphipathic channel that is thought to accomodate an alpha-helix of a target protein; it has been proposed that TPR proteins preferably interact with WD-40 repeat proteins, but in many instances several TPR-proteins seem to aggregate to multi-protein complexes; examples of TPR-proteins include, Cdc16p, Cdc23p and C | Back alignment and domain information |
|---|
Probab=99.17 E-value=5.5e-10 Score=80.69 Aligned_cols=97 Identities=30% Similarity=0.428 Sum_probs=47.6
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHhhCCCChHHHHHHHHHHHhhhcccccccccchhhhhHHHhcCCHHHHHHHHHHHH
Q 012143 203 IGNLGIAYFQSGDMEQSAKCFQDLILKDQNHPAALINYAALLLCKYGSVLAGAGANTGEGACLDQASAVNVAKECLLAAL 282 (470)
Q Consensus 203 ~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~ 282 (470)
++.+|.++...|++++|+..+++++...|.+...+..++.++. ..+++++|+.++++++
T Consensus 3 ~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~---------------------~~~~~~~a~~~~~~~~ 61 (100)
T cd00189 3 LLNLGNLYYKLGDYDEALEYYEKALELDPDNADAYYNLAAAYY---------------------KLGKYEEALEDYEKAL 61 (100)
T ss_pred HHHHHHHHHHHhcHHHHHHHHHHHHhcCCccHHHHHHHHHHHH---------------------HHHHHHHHHHHHHHHH
Confidence 3444444444555555555555554444444444444444433 3444555555555555
Q ss_pred hcCCCCHHHHHHHHHHHHHcCChhHHHHHHHHHHhcCC
Q 012143 283 KADPKAAHIWANLANAYYLTGDHRSSGKCLEKAAKLEP 320 (470)
Q Consensus 283 ~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~p 320 (470)
...|.+..++..+|.++...|++++|...+.+++...|
T Consensus 62 ~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~ 99 (100)
T cd00189 62 ELDPDNAKAYYNLGLAYYKLGKYEEALEAYEKALELDP 99 (100)
T ss_pred hCCCcchhHHHHHHHHHHHHHhHHHHHHHHHHHHccCC
Confidence 55555445555555555555555555555555554443
|
|
| >PRK11906 transcriptional regulator; Provisional | Back alignment and domain information |
|---|
Probab=99.17 E-value=2.1e-09 Score=95.23 Aligned_cols=150 Identities=12% Similarity=0.144 Sum_probs=125.5
Q ss_pred ccHHHHHHHHHHhh---hcCccchHHHHHHHHHHHHc---------CChHHHHHHHHHHhhcCCCChHHHHHHHHHHHHc
Q 012143 146 EELEEILSKLKESM---QSDTRQAVVWNTLGLILLKS---------GRLQSSISVLSSLLAVDPNNCDCIGNLGIAYFQS 213 (470)
Q Consensus 146 ~~~~~A~~~~~~~~---~~~p~~~~~~~~l~~~~~~~---------~~~~~A~~~~~~a~~~~~~~~~~~~~la~~~~~~ 213 (470)
...+.|+.+|.+++ ..+|+.+.++..++.|++.. ....+|....+++++++|.++.++..+|.+....
T Consensus 272 ~~~~~Al~lf~ra~~~~~ldp~~a~a~~~lA~~h~~~~~~g~~~~~~~~~~a~~~A~rAveld~~Da~a~~~~g~~~~~~ 351 (458)
T PRK11906 272 ESIYRAMTIFDRLQNKSDIQTLKTECYCLLAECHMSLALHGKSELELAAQKALELLDYVSDITTVDGKILAIMGLITGLS 351 (458)
T ss_pred HHHHHHHHHHHHHhhcccCCcccHHHHHHHHHHHHHHHHhcCCCchHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHhh
Confidence 45688999999999 89999999999999998765 2346788889999999999999999999999999
Q ss_pred CCHHHHHHHHHHHHhhCCCChHHHHHHHHHHHhhhcccccccccchhhhhHHHhcCCHHHHHHHHHHHHhcCCCCHHHHH
Q 012143 214 GDMEQSAKCFQDLILKDQNHPAALINYAALLLCKYGSVLAGAGANTGEGACLDQASAVNVAKECLLAALKADPKAAHIWA 293 (470)
Q Consensus 214 g~~~~A~~~~~~~l~~~p~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~ 293 (470)
++++.|...|++++.++|+.+.+++..|.+.. -.|+.++|++.++++++++|....+-.
T Consensus 352 ~~~~~a~~~f~rA~~L~Pn~A~~~~~~~~~~~---------------------~~G~~~~a~~~i~~alrLsP~~~~~~~ 410 (458)
T PRK11906 352 GQAKVSHILFEQAKIHSTDIASLYYYRALVHF---------------------HNEKIEEARICIDKSLQLEPRRRKAVV 410 (458)
T ss_pred cchhhHHHHHHHHhhcCCccHHHHHHHHHHHH---------------------HcCCHHHHHHHHHHHhccCchhhHHHH
Confidence 99999999999999999999999999888877 689999999999999999998655544
Q ss_pred HHHHH-HHHcCChhHHHHHHHHHH
Q 012143 294 NLANA-YYLTGDHRSSGKCLEKAA 316 (470)
Q Consensus 294 ~la~~-~~~~g~~~~A~~~~~~a~ 316 (470)
..-.+ .+.....++|+..|-+-.
T Consensus 411 ~~~~~~~~~~~~~~~~~~~~~~~~ 434 (458)
T PRK11906 411 IKECVDMYVPNPLKNNIKLYYKET 434 (458)
T ss_pred HHHHHHHHcCCchhhhHHHHhhcc
Confidence 44444 445566788888776543
|
|
| >cd00189 TPR Tetratricopeptide repeat domain; typically contains 34 amino acids [WLF]-X(2)-[LIM]-[GAS]-X(2)-[YLF]-X(8)-[ASE]-X(3)-[FYL]-X(2)-[ASL]-X(4)-[PKE] is the consensus sequence; found in a variety of organisms including bacteria, cyanobacteria, yeast, fungi, plants, and humans in various subcellular locations; involved in a variety of functions including protein-protein interactions, but common features in the interaction partners have not been defined; involved in chaperone, cell-cycle, transciption, and protein transport complexes; the number of TPR motifs varies among proteins (1,3-11,13 15,16,19); 5-6 tandem repeats generate a right-handed helical structure with an amphipathic channel that is thought to accomodate an alpha-helix of a target protein; it has been proposed that TPR proteins preferably interact with WD-40 repeat proteins, but in many instances several TPR-proteins seem to aggregate to multi-protein complexes; examples of TPR-proteins include, Cdc16p, Cdc23p and C | Back alignment and domain information |
|---|
Probab=99.17 E-value=5.4e-10 Score=80.70 Aligned_cols=99 Identities=24% Similarity=0.370 Sum_probs=86.3
Q ss_pred HHHHHHHHHHHcCChHHHHHHHHHHhhcCCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCChHHHHHHHHHHHhh
Q 012143 168 VWNTLGLILLKSGRLQSSISVLSSLLAVDPNNCDCIGNLGIAYFQSGDMEQSAKCFQDLILKDQNHPAALINYAALLLCK 247 (470)
Q Consensus 168 ~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~l~~~~~~~ 247 (470)
+++.+|.++...|++++|+..++++++..|.++.++..+|.++...|++++|+..+++++...|.+...+..++.++.
T Consensus 2 ~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~-- 79 (100)
T cd00189 2 ALLNLGNLYYKLGDYDEALEYYEKALELDPDNADAYYNLAAAYYKLGKYEEALEDYEKALELDPDNAKAYYNLGLAYY-- 79 (100)
T ss_pred HHHHHHHHHHHHhcHHHHHHHHHHHHhcCCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCcchhHHHHHHHHHH--
Confidence 567888999999999999999999999999888889999999999999999999999999998888877777777776
Q ss_pred hcccccccccchhhhhHHHhcCCHHHHHHHHHHHHhcCCC
Q 012143 248 YGSVLAGAGANTGEGACLDQASAVNVAKECLLAALKADPK 287 (470)
Q Consensus 248 ~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~p~ 287 (470)
..|++++|...+.+++...|+
T Consensus 80 -------------------~~~~~~~a~~~~~~~~~~~~~ 100 (100)
T cd00189 80 -------------------KLGKYEEALEAYEKALELDPN 100 (100)
T ss_pred -------------------HHHhHHHHHHHHHHHHccCCC
Confidence 688899999999998887763
|
|
| >COG4785 NlpI Lipoprotein NlpI, contains TPR repeats [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.17 E-value=3.3e-09 Score=83.07 Aligned_cols=126 Identities=21% Similarity=0.204 Sum_probs=91.8
Q ss_pred chHHHHHHHHHHHHcCChHHHHHHHHHHhhcCCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCChHHHHHHHHHH
Q 012143 165 QAVVWNTLGLILLKSGRLQSSISVLSSLLAVDPNNCDCIGNLGIAYFQSGDMEQSAKCFQDLILKDQNHPAALINYAALL 244 (470)
Q Consensus 165 ~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~l~~~~ 244 (470)
.+..++..|..|-..|-+.-|.-.|.+++.+.|+-+.++..+|..+...|+++.|.+.|...++++|.+.-+..+.|..+
T Consensus 64 RA~l~fERGvlYDSlGL~~LAR~DftQaLai~P~m~~vfNyLG~Yl~~a~~fdaa~eaFds~~ELDp~y~Ya~lNRgi~~ 143 (297)
T COG4785 64 RAQLLFERGVLYDSLGLRALARNDFSQALAIRPDMPEVFNYLGIYLTQAGNFDAAYEAFDSVLELDPTYNYAHLNRGIAL 143 (297)
T ss_pred HHHHHHHhcchhhhhhHHHHHhhhhhhhhhcCCCcHHHHHHHHHHHHhcccchHHHHHhhhHhccCCcchHHHhccceee
Confidence 35567778888888888888888888888888888888888888888888888888888888888888877777776665
Q ss_pred HhhhcccccccccchhhhhHHHhcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCChhHHHHHH
Q 012143 245 LCKYGSVLAGAGANTGEGACLDQASAVNVAKECLLAALKADPKAAHIWANLANAYYLTGDHRSSGKCL 312 (470)
Q Consensus 245 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~la~~~~~~g~~~~A~~~~ 312 (470)
. --|++.-|.+-+.+-.+.+|++|.--..+-..-. .-++.+|...+
T Consensus 144 Y---------------------Y~gR~~LAq~d~~~fYQ~D~~DPfR~LWLYl~E~-k~dP~~A~tnL 189 (297)
T COG4785 144 Y---------------------YGGRYKLAQDDLLAFYQDDPNDPFRSLWLYLNEQ-KLDPKQAKTNL 189 (297)
T ss_pred e---------------------ecCchHhhHHHHHHHHhcCCCChHHHHHHHHHHh-hCCHHHHHHHH
Confidence 5 4778888888888888888877653333222222 22455555444
|
|
| >COG4785 NlpI Lipoprotein NlpI, contains TPR repeats [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.15 E-value=7.4e-09 Score=81.14 Aligned_cols=105 Identities=19% Similarity=0.156 Sum_probs=98.4
Q ss_pred ChHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCChHHHHHHHHHHHhhhcccccccccchhhhhHHHhcCCHHHHHHHH
Q 012143 199 NCDCIGNLGIAYFQSGDMEQSAKCFQDLILKDQNHPAALINYAALLLCKYGSVLAGAGANTGEGACLDQASAVNVAKECL 278 (470)
Q Consensus 199 ~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~ 278 (470)
.+..++..|..|-..|-+.-|.-.|.+++.+.|+.+.+...+|..+. ..|+++.|.+.|
T Consensus 64 RA~l~fERGvlYDSlGL~~LAR~DftQaLai~P~m~~vfNyLG~Yl~---------------------~a~~fdaa~eaF 122 (297)
T COG4785 64 RAQLLFERGVLYDSLGLRALARNDFSQALAIRPDMPEVFNYLGIYLT---------------------QAGNFDAAYEAF 122 (297)
T ss_pred HHHHHHHhcchhhhhhHHHHHhhhhhhhhhcCCCcHHHHHHHHHHHH---------------------hcccchHHHHHh
Confidence 35678888999999999999999999999999999999999888777 799999999999
Q ss_pred HHHHhcCCCCHHHHHHHHHHHHHcCChhHHHHHHHHHHhcCCCccc
Q 012143 279 LAALKADPKAAHIWANLANAYYLTGDHRSSGKCLEKAAKLEPNCMS 324 (470)
Q Consensus 279 ~~~~~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~p~~~~ 324 (470)
...++++|.+-.++.+.|..++.-|++.-|.+.+.+..+.+|+++.
T Consensus 123 ds~~ELDp~y~Ya~lNRgi~~YY~gR~~LAq~d~~~fYQ~D~~DPf 168 (297)
T COG4785 123 DSVLELDPTYNYAHLNRGIALYYGGRYKLAQDDLLAFYQDDPNDPF 168 (297)
T ss_pred hhHhccCCcchHHHhccceeeeecCchHhhHHHHHHHHhcCCCChH
Confidence 9999999999999999999999999999999999999999999874
|
|
| >PF14938 SNAP: Soluble NSF attachment protein, SNAP; PDB: 1QQE_A 2IFU_A | Back alignment and domain information |
|---|
Probab=99.15 E-value=2.1e-09 Score=93.84 Aligned_cols=160 Identities=14% Similarity=0.174 Sum_probs=101.6
Q ss_pred cHHHHHHHHHHhhhcCcc------chHHHHHHHHHHHHc-CChHHHHHHHHHHhhcCCC--C----hHHHHHHHHHHHHc
Q 012143 147 ELEEILSKLKESMQSDTR------QAVVWNTLGLILLKS-GRLQSSISVLSSLLAVDPN--N----CDCIGNLGIAYFQS 213 (470)
Q Consensus 147 ~~~~A~~~~~~~~~~~p~------~~~~~~~l~~~~~~~-~~~~~A~~~~~~a~~~~~~--~----~~~~~~la~~~~~~ 213 (470)
++++|+.++++++...-. -..++..+|.+|... |++++|+++|++++++... . ..++..+|.++...
T Consensus 89 ~~~~Ai~~~~~A~~~y~~~G~~~~aA~~~~~lA~~ye~~~~d~e~Ai~~Y~~A~~~y~~e~~~~~a~~~~~~~A~l~~~l 168 (282)
T PF14938_consen 89 DPDEAIECYEKAIEIYREAGRFSQAAKCLKELAEIYEEQLGDYEKAIEYYQKAAELYEQEGSPHSAAECLLKAADLYARL 168 (282)
T ss_dssp THHHHHHHHHHHHHHHHHCT-HHHHHHHHHHHHHHHCCTT--HHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHT
T ss_pred CHHHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHCCChhhHHHHHHHHHHHHHHh
Confidence 556777777776654211 145778899999999 9999999999999987321 1 35788999999999
Q ss_pred CCHHHHHHHHHHHHhhCCCChHHHHHHHHHHHhhhcccccccccchhhhhHHHhcCCHHHHHHHHHHHHhcCCCCH----
Q 012143 214 GDMEQSAKCFQDLILKDQNHPAALINYAALLLCKYGSVLAGAGANTGEGACLDQASAVNVAKECLLAALKADPKAA---- 289 (470)
Q Consensus 214 g~~~~A~~~~~~~l~~~p~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~p~~~---- 289 (470)
|+|++|++.|+++....-++....+.....++ ..+.++...|++..|...+++....+|...
T Consensus 169 ~~y~~A~~~~e~~~~~~l~~~l~~~~~~~~~l--------------~a~l~~L~~~D~v~A~~~~~~~~~~~~~F~~s~E 234 (282)
T PF14938_consen 169 GRYEEAIEIYEEVAKKCLENNLLKYSAKEYFL--------------KAILCHLAMGDYVAARKALERYCSQDPSFASSRE 234 (282)
T ss_dssp T-HHHHHHHHHHHHHTCCCHCTTGHHHHHHHH--------------HHHHHHHHTT-HHHHHHHHHHHGTTSTTSTTSHH
T ss_pred CCHHHHHHHHHHHHHHhhcccccchhHHHHHH--------------HHHHHHHHcCCHHHHHHHHHHHHhhCCCCCCcHH
Confidence 99999999999998754332221112222211 123455578999999999999999988632
Q ss_pred -HHHHHHHHHHH--HcCChhHHHHHHHHHHhcCC
Q 012143 290 -HIWANLANAYY--LTGDHRSSGKCLEKAAKLEP 320 (470)
Q Consensus 290 -~~~~~la~~~~--~~g~~~~A~~~~~~a~~~~p 320 (470)
.....|-.++- ....++.|+.-|++..+++|
T Consensus 235 ~~~~~~l~~A~~~~D~e~f~~av~~~d~~~~ld~ 268 (282)
T PF14938_consen 235 YKFLEDLLEAYEEGDVEAFTEAVAEYDSISRLDN 268 (282)
T ss_dssp HHHHHHHHHHHHTT-CCCHHHHCHHHTTSS---H
T ss_pred HHHHHHHHHHHHhCCHHHHHHHHHHHcccCccHH
Confidence 23333333332 23346677777766655544
|
|
| >PF14938 SNAP: Soluble NSF attachment protein, SNAP; PDB: 1QQE_A 2IFU_A | Back alignment and domain information |
|---|
Probab=99.12 E-value=1.4e-08 Score=88.57 Aligned_cols=184 Identities=17% Similarity=0.153 Sum_probs=124.6
Q ss_pred HHHHHHHhCChhHHHHHHHHHHHHHhhhhcccchhhhHHHHHHhhhccccccccCCCccccccCcccHHHHHHHHHHhhh
Q 012143 81 LGLMYQRLGQPLKAVSSYEKAEEILLRCEADIARPELLSLVQIHHAQCLLPESSGDNSLDKELEPEELEEILSKLKESMQ 160 (470)
Q Consensus 81 l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~ 160 (470)
.|.+|...|++++|...|.++....- +.++...|
T Consensus 41 Aa~~fk~~~~~~~A~~ay~kAa~~~~-------------------------------------~~~~~~~A--------- 74 (282)
T PF14938_consen 41 AANCFKLAKDWEKAAEAYEKAADCYE-------------------------------------KLGDKFEA--------- 74 (282)
T ss_dssp HHHHHHHTT-CHHHHHHHHHHHHHHH-------------------------------------HTT-HHHH---------
T ss_pred HHHHHHHHhccchhHHHHHHHHHHHH-------------------------------------HcCCHHHH---------
Confidence 47788888888888888888876521 11111222
Q ss_pred cCccchHHHHHHHHHHHHcCChHHHHHHHHHHhhcCC--C----ChHHHHHHHHHHHHc-CCHHHHHHHHHHHHhhCCCC
Q 012143 161 SDTRQAVVWNTLGLILLKSGRLQSSISVLSSLLAVDP--N----NCDCIGNLGIAYFQS-GDMEQSAKCFQDLILKDQNH 233 (470)
Q Consensus 161 ~~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~--~----~~~~~~~la~~~~~~-g~~~~A~~~~~~~l~~~p~~ 233 (470)
...+...+.++... ++++|+.+|++++.+.- . -..++..+|.+|... |++++|+++|++++.+....
T Consensus 75 -----a~~~~~Aa~~~k~~-~~~~Ai~~~~~A~~~y~~~G~~~~aA~~~~~lA~~ye~~~~d~e~Ai~~Y~~A~~~y~~e 148 (282)
T PF14938_consen 75 -----AKAYEEAANCYKKG-DPDEAIECYEKAIEIYREAGRFSQAAKCLKELAEIYEEQLGDYEKAIEYYQKAAELYEQE 148 (282)
T ss_dssp -----HHHHHHHHHHHHHT-THHHHHHHHHHHHHHHHHCT-HHHHHHHHHHHHHHHCCTT--HHHHHHHHHHHHHHHHHT
T ss_pred -----HHHHHHHHHHHHhh-CHHHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHC
Confidence 23444555565554 88888888888887622 1 145788999999998 99999999999999875433
Q ss_pred hHHHHHHHHHHHhhhcccccccccchhhhhHHHhcCCHHHHHHHHHHHHhcCCC-------CHHHHHHHHHHHHHcCChh
Q 012143 234 PAALINYAALLLCKYGSVLAGAGANTGEGACLDQASAVNVAKECLLAALKADPK-------AAHIWANLANAYYLTGDHR 306 (470)
Q Consensus 234 ~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~p~-------~~~~~~~la~~~~~~g~~~ 306 (470)
... .....++. .+|.++.+.|+|++|++.|++.....-+ ....++..+.++...|++.
T Consensus 149 ~~~-~~a~~~~~--------------~~A~l~~~l~~y~~A~~~~e~~~~~~l~~~l~~~~~~~~~l~a~l~~L~~~D~v 213 (282)
T PF14938_consen 149 GSP-HSAAECLL--------------KAADLYARLGRYEEAIEIYEEVAKKCLENNLLKYSAKEYFLKAILCHLAMGDYV 213 (282)
T ss_dssp T-H-HHHHHHHH--------------HHHHHHHHTT-HHHHHHHHHHHHHTCCCHCTTGHHHHHHHHHHHHHHHHTT-HH
T ss_pred CCh-hhHHHHHH--------------HHHHHHHHhCCHHHHHHHHHHHHHHhhcccccchhHHHHHHHHHHHHHHcCCHH
Confidence 221 22222222 2466677999999999999999875432 1234567788999999999
Q ss_pred HHHHHHHHHHhcCCCcccHHHHHHH
Q 012143 307 SSGKCLEKAAKLEPNCMSTRYAVAV 331 (470)
Q Consensus 307 ~A~~~~~~a~~~~p~~~~~~~~l~~ 331 (470)
.|...+++....+|......-...+
T Consensus 214 ~A~~~~~~~~~~~~~F~~s~E~~~~ 238 (282)
T PF14938_consen 214 AARKALERYCSQDPSFASSREYKFL 238 (282)
T ss_dssp HHHHHHHHHGTTSTTSTTSHHHHHH
T ss_pred HHHHHHHHHHhhCCCCCCcHHHHHH
Confidence 9999999999999987665444333
|
|
| >CHL00033 ycf3 photosystem I assembly protein Ycf3 | Back alignment and domain information |
|---|
Probab=99.12 E-value=2.1e-09 Score=86.13 Aligned_cols=123 Identities=15% Similarity=0.166 Sum_probs=97.7
Q ss_pred CChHHHHHHHHHHhhcCCCC--hHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCh---HHHHHHHHHHHhhhcccccc
Q 012143 180 GRLQSSISVLSSLLAVDPNN--CDCIGNLGIAYFQSGDMEQSAKCFQDLILKDQNHP---AALINYAALLLCKYGSVLAG 254 (470)
Q Consensus 180 ~~~~~A~~~~~~a~~~~~~~--~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~---~~~~~l~~~~~~~~~~~~~~ 254 (470)
+.+..+...+...++..+.. ...++.+|.++...|++++|+..|++++.+.|+.. .++.++|.++.
T Consensus 13 ~~~~~~~~~l~~~~~~~~~~~~a~~~~~~g~~~~~~g~~~~A~~~~~~al~l~~~~~~~~~~~~~lg~~~~--------- 83 (168)
T CHL00033 13 KTFTIVADILLRILPTTSGEKEAFTYYRDGMSAQSEGEYAEALQNYYEAMRLEIDPYDRSYILYNIGLIHT--------- 83 (168)
T ss_pred cccccchhhhhHhccCCchhHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhccccchhhHHHHHHHHHHHH---------
Confidence 44566666666655555554 56789999999999999999999999998877633 35666666665
Q ss_pred cccchhhhhHHHhcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHH-------HcCChh-------HHHHHHHHHHhcCC
Q 012143 255 AGANTGEGACLDQASAVNVAKECLLAALKADPKAAHIWANLANAYY-------LTGDHR-------SSGKCLEKAAKLEP 320 (470)
Q Consensus 255 ~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~la~~~~-------~~g~~~-------~A~~~~~~a~~~~p 320 (470)
..|++++|+..+++++.+.|.....+..+|.++. ..|+++ +|+.+|++++..+|
T Consensus 84 ------------~~g~~~eA~~~~~~Al~~~~~~~~~~~~la~i~~~~~~~~~~~g~~~~A~~~~~~a~~~~~~a~~~~p 151 (168)
T CHL00033 84 ------------SNGEHTKALEYYFQALERNPFLPQALNNMAVICHYRGEQAIEQGDSEIAEAWFDQAAEYWKQAIALAP 151 (168)
T ss_pred ------------HcCCHHHHHHHHHHHHHhCcCcHHHHHHHHHHHHHhhHHHHHcccHHHHHHHHHHHHHHHHHHHHhCc
Confidence 7999999999999999999999999999999998 777766 56666667777787
Q ss_pred Ccc
Q 012143 321 NCM 323 (470)
Q Consensus 321 ~~~ 323 (470)
.+.
T Consensus 152 ~~~ 154 (168)
T CHL00033 152 GNY 154 (168)
T ss_pred ccH
Confidence 644
|
|
| >PF13432 TPR_16: Tetratricopeptide repeat; PDB: 3CVP_A 3CVL_A 3CVQ_A 3CV0_A 2GW1_B 3CVN_A 3QKY_A 2PL2_B | Back alignment and domain information |
|---|
Probab=99.12 E-value=3.7e-10 Score=74.26 Aligned_cols=63 Identities=22% Similarity=0.241 Sum_probs=58.5
Q ss_pred hHHHHHHHhccHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHcCChHHHHHHHHHHHHhhccC
Q 012143 406 GESAFLDQASAVNVAKECLLAALKADPKAAHIWANLANAYYLTGDHRSSGKCLEKVLMVYCSS 468 (470)
Q Consensus 406 ~l~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~ 468 (470)
.+|..+...|++++|+..|+++++.+|+++.+|+.+|.++..+|++++|+..|++++++.|++
T Consensus 2 ~~a~~~~~~g~~~~A~~~~~~~l~~~P~~~~a~~~lg~~~~~~g~~~~A~~~~~~a~~~~P~~ 64 (65)
T PF13432_consen 2 ALARALYQQGDYDEAIAAFEQALKQDPDNPEAWYLLGRILYQQGRYDEALAYYERALELDPDN 64 (65)
T ss_dssp HHHHHHHHCTHHHHHHHHHHHHHCCSTTHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHHSTT-
T ss_pred hHHHHHHHcCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCcCC
Confidence 567899999999999999999999999999999999999999999999999999999998864
|
|
| >PRK02603 photosystem I assembly protein Ycf3; Provisional | Back alignment and domain information |
|---|
Probab=99.12 E-value=1.6e-09 Score=87.20 Aligned_cols=105 Identities=17% Similarity=0.256 Sum_probs=90.5
Q ss_pred CCChHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCh---HHHHHHHHHHHhhhcccccccccchhhhhHHHhcCCHHH
Q 012143 197 PNNCDCIGNLGIAYFQSGDMEQSAKCFQDLILKDQNHP---AALINYAALLLCKYGSVLAGAGANTGEGACLDQASAVNV 273 (470)
Q Consensus 197 ~~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~---~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 273 (470)
+....+++.+|.++...|++++|+.+|++++...|+.. ..+..+|.++. ..|++++
T Consensus 32 ~~~a~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~la~~~~---------------------~~g~~~~ 90 (172)
T PRK02603 32 AKEAFVYYRDGMSAQADGEYAEALENYEEALKLEEDPNDRSYILYNMGIIYA---------------------SNGEHDK 90 (172)
T ss_pred hhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhccchHHHHHHHHHHHHH---------------------HcCCHHH
Confidence 35567899999999999999999999999998877643 45556665555 8999999
Q ss_pred HHHHHHHHHhcCCCCHHHHHHHHHHHHHcCC--------------hhHHHHHHHHHHhcCCCc
Q 012143 274 AKECLLAALKADPKAAHIWANLANAYYLTGD--------------HRSSGKCLEKAAKLEPNC 322 (470)
Q Consensus 274 A~~~~~~~~~~~p~~~~~~~~la~~~~~~g~--------------~~~A~~~~~~a~~~~p~~ 322 (470)
|+.++.+++...|+++..+..+|.++...|+ +++|++++++++..+|++
T Consensus 91 A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~a~~~~~~A~~~~~~A~~~~~~a~~~~p~~ 153 (172)
T PRK02603 91 ALEYYHQALELNPKQPSALNNIAVIYHKRGEKAEEAGDQDEAEALFDKAAEYWKQAIRLAPNN 153 (172)
T ss_pred HHHHHHHHHHhCcccHHHHHHHHHHHHHcCChHhHhhCHHHHHHHHHHHHHHHHHHHhhCchh
Confidence 9999999999999999999999999999888 577888888888888886
|
|
| >PRK11906 transcriptional regulator; Provisional | Back alignment and domain information |
|---|
Probab=99.11 E-value=5.7e-09 Score=92.62 Aligned_cols=180 Identities=11% Similarity=0.061 Sum_probs=140.1
Q ss_pred hcCCCCc---chh----hhcccchhhh---hcChhhHHHHHHHHH---HhCCCChhHHHHHHHHHHHhCChhHHHHHHHH
Q 012143 34 EFGVDAD---GDQ----SGLGTSSSSR---EEKVSSLKTGLVHVA---RKMPKNAHAHFLLGLMYQRLGQPLKAVSSYEK 100 (470)
Q Consensus 34 ~~~p~~~---~~~----~~~~~~~~~~---~~~~~~A~~~~~~~l---~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~ 100 (470)
...|.+. .+| +..|.. ... ......|...|.+++ ..+|..+.++..++.|++..- +
T Consensus 242 r~~~~~l~~~~a~~~d~ylrg~~-~~~~~t~~~~~~Al~lf~ra~~~~~ldp~~a~a~~~lA~~h~~~~--------~-- 310 (458)
T PRK11906 242 RLAKQDQGYKNHYLSDEMLAGKK-ELYDFTPESIYRAMTIFDRLQNKSDIQTLKTECYCLLAECHMSLA--------L-- 310 (458)
T ss_pred cCCCCCcccccchhhHHHHHHHH-HhhccCHHHHHHHHHHHHHHhhcccCCcccHHHHHHHHHHHHHHH--------H--
Confidence 3335555 455 566665 432 346778888999999 999999999999999987530 0
Q ss_pred HHHHHhhhhcccchhhhHHHHHHhhhccccccccCCCccccccCcccHHHHHHHHHHhhhcCccchHHHHHHHHHHHHcC
Q 012143 101 AEEILLRCEADIARPELLSLVQIHHAQCLLPESSGDNSLDKELEPEELEEILSKLKESMQSDTRQAVVWNTLGLILLKSG 180 (470)
Q Consensus 101 al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~~ 180 (470)
.... -...+..+|.+..+++++.+|.|+.++..+|.+....+
T Consensus 311 -~g~~-------------------------------------~~~~~~~~a~~~A~rAveld~~Da~a~~~~g~~~~~~~ 352 (458)
T PRK11906 311 -HGKS-------------------------------------ELELAAQKALELLDYVSDITTVDGKILAIMGLITGLSG 352 (458)
T ss_pred -hcCC-------------------------------------CchHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHhhc
Confidence 0000 01223478899999999999999999999999999999
Q ss_pred ChHHHHHHHHHHhhcCCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCChHHHHHHHH--HHHhhhcccccccccc
Q 012143 181 RLQSSISVLSSLLAVDPNNCDCIGNLGIAYFQSGDMEQSAKCFQDLILKDQNHPAALINYAA--LLLCKYGSVLAGAGAN 258 (470)
Q Consensus 181 ~~~~A~~~~~~a~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~l~~--~~~~~~~~~~~~~~~~ 258 (470)
+++.|...|++++.++|+.+.+++..|.+....|+.++|++.++++++++|....+-...-. .|.
T Consensus 353 ~~~~a~~~f~rA~~L~Pn~A~~~~~~~~~~~~~G~~~~a~~~i~~alrLsP~~~~~~~~~~~~~~~~------------- 419 (458)
T PRK11906 353 QAKVSHILFEQAKIHSTDIASLYYYRALVHFHNEKIEEARICIDKSLQLEPRRRKAVVIKECVDMYV------------- 419 (458)
T ss_pred chhhHHHHHHHHhhcCCccHHHHHHHHHHHHHcCCHHHHHHHHHHHhccCchhhHHHHHHHHHHHHc-------------
Confidence 99999999999999999999999999999999999999999999999999987665433222 232
Q ss_pred hhhhhHHHhcCCHHHHHHHHHHHHhc
Q 012143 259 TGEGACLDQASAVNVAKECLLAALKA 284 (470)
Q Consensus 259 ~~~~~~~~~~~~~~~A~~~~~~~~~~ 284 (470)
....++|+..|-+-.+.
T Consensus 420 ---------~~~~~~~~~~~~~~~~~ 436 (458)
T PRK11906 420 ---------PNPLKNNIKLYYKETES 436 (458)
T ss_pred ---------CCchhhhHHHHhhcccc
Confidence 45578888887765443
|
|
| >KOG0543 consensus FKBP-type peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=99.10 E-value=5.1e-09 Score=90.55 Aligned_cols=128 Identities=20% Similarity=0.183 Sum_probs=102.3
Q ss_pred hHHHHHHHHHHHhCChhHHHHHHHHHHHHHhhhhcccchhhhHHHHHHhhhccccccccCCCccccccCcccHHHHHHHH
Q 012143 76 HAHFLLGLMYQRLGQPLKAVSSYEKAEEILLRCEADIARPELLSLVQIHHAQCLLPESSGDNSLDKELEPEELEEILSKL 155 (470)
Q Consensus 76 ~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~ 155 (470)
......|..+++.|+|..|...|++++........ -+.++... .
T Consensus 209 ~~~ke~Gn~~fK~gk~~~A~~~Yerav~~l~~~~~-----------------------------------~~~ee~~~-~ 252 (397)
T KOG0543|consen 209 DRKKERGNVLFKEGKFKLAKKRYERAVSFLEYRRS-----------------------------------FDEEEQKK-A 252 (397)
T ss_pred HHHHHhhhHHHhhchHHHHHHHHHHHHHHhhcccc-----------------------------------CCHHHHHH-H
Confidence 34556799999999999999999999986432110 00011111 0
Q ss_pred HHhhhcCccchHHHHHHHHHHHHcCChHHHHHHHHHHhhcCCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCChH
Q 012143 156 KESMQSDTRQAVVWNTLGLILLKSGRLQSSISVLSSLLAVDPNNCDCIGNLGIAYFQSGDMEQSAKCFQDLILKDQNHPA 235 (470)
Q Consensus 156 ~~~~~~~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~ 235 (470)
.. --..++.+++.|+.++++|..|+..+.++|.++|++..+++..|.++..+|+++.|+..|+++++++|+|..
T Consensus 253 ~~------~k~~~~lNlA~c~lKl~~~~~Ai~~c~kvLe~~~~N~KALyRrG~A~l~~~e~~~A~~df~ka~k~~P~Nka 326 (397)
T KOG0543|consen 253 EA------LKLACHLNLAACYLKLKEYKEAIESCNKVLELDPNNVKALYRRGQALLALGEYDLARDDFQKALKLEPSNKA 326 (397)
T ss_pred HH------HHHHHhhHHHHHHHhhhhHHHHHHHHHHHHhcCCCchhHHHHHHHHHHhhccHHHHHHHHHHHHHhCCCcHH
Confidence 00 113578899999999999999999999999999999999999999999999999999999999999999988
Q ss_pred HHHHHHHHHH
Q 012143 236 ALINYAALLL 245 (470)
Q Consensus 236 ~~~~l~~~~~ 245 (470)
+...+..+..
T Consensus 327 ~~~el~~l~~ 336 (397)
T KOG0543|consen 327 ARAELIKLKQ 336 (397)
T ss_pred HHHHHHHHHH
Confidence 8887777665
|
|
| >KOG1070 consensus rRNA processing protein Rrp5 [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=99.09 E-value=2.5e-08 Score=98.21 Aligned_cols=222 Identities=16% Similarity=0.117 Sum_probs=180.1
Q ss_pred hhHHHHHHHHHHhCCCChhHHHHHHHHHHHhCChhHHHHHHHHHHHHH-hhhhcccchhhhHHHHHHhhhccccccccCC
Q 012143 58 SSLKTGLVHVARKMPKNAHAHFLLGLMYQRLGQPLKAVSSYEKAEEIL-LRCEADIARPELLSLVQIHHAQCLLPESSGD 136 (470)
Q Consensus 58 ~~A~~~~~~~l~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 136 (470)
.+..+.|++.+.-+|+..-.|...-..+.+.++.++|.+.+++|+..- +..+ .+-+ .+|.++-.+....
T Consensus 1441 pesaeDferlvrssPNSSi~WI~YMaf~LelsEiekAR~iaerAL~tIN~REe-----eEKL---NiWiA~lNlEn~y-- 1510 (1710)
T KOG1070|consen 1441 PESAEDFERLVRSSPNSSILWIRYMAFHLELSEIEKARKIAERALKTINFREE-----EEKL---NIWIAYLNLENAY-- 1510 (1710)
T ss_pred CcCHHHHHHHHhcCCCcchHHHHHHHHHhhhhhhHHHHHHHHHHhhhCCcchh-----HHHH---HHHHHHHhHHHhh--
Confidence 345667888888899999999999999999999999999999999752 2211 1112 2232222222222
Q ss_pred CccccccCcccHHHHHHHHHHhhhcCccchHHHHHHHHHHHHcCChHHHHHHHHHHhhcCCCChHHHHHHHHHHHHcCCH
Q 012143 137 NSLDKELEPEELEEILSKLKESMQSDTRQAVVWNTLGLILLKSGRLQSSISVLSSLLAVDPNNCDCIGNLGIAYFQSGDM 216 (470)
Q Consensus 137 ~~~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~la~~~~~~g~~ 216 (470)
|.-+.-.+.|+++.+.. +-..++..|..+|...+.+++|.++|+..++...+...+|..+|..++++++-
T Consensus 1511 ---------G~eesl~kVFeRAcqyc-d~~~V~~~L~~iy~k~ek~~~A~ell~~m~KKF~q~~~vW~~y~~fLl~~ne~ 1580 (1710)
T KOG1070|consen 1511 ---------GTEESLKKVFERACQYC-DAYTVHLKLLGIYEKSEKNDEADELLRLMLKKFGQTRKVWIMYADFLLRQNEA 1580 (1710)
T ss_pred ---------CcHHHHHHHHHHHHHhc-chHHHHHHHHHHHHHhhcchhHHHHHHHHHHHhcchhhHHHHHHHHHhcccHH
Confidence 33367778888888764 23467888999999999999999999999999888899999999999999999
Q ss_pred HHHHHHHHHHHhhCCC--ChHHHHHHHHHHHhhhcccccccccchhhhhHHHhcCCHHHHHHHHHHHHhcCCCCHHHHHH
Q 012143 217 EQSAKCFQDLILKDQN--HPAALINYAALLLCKYGSVLAGAGANTGEGACLDQASAVNVAKECLLAALKADPKAAHIWAN 294 (470)
Q Consensus 217 ~~A~~~~~~~l~~~p~--~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~ 294 (470)
+.|...+.+++..-|. +.......+.+-+ +.|+.+.+...|+..+..+|...+.|.-
T Consensus 1581 ~aa~~lL~rAL~~lPk~eHv~~IskfAqLEF---------------------k~GDaeRGRtlfEgll~ayPKRtDlW~V 1639 (1710)
T KOG1070|consen 1581 EAARELLKRALKSLPKQEHVEFISKFAQLEF---------------------KYGDAERGRTLFEGLLSAYPKRTDLWSV 1639 (1710)
T ss_pred HHHHHHHHHHHhhcchhhhHHHHHHHHHHHh---------------------hcCCchhhHHHHHHHHhhCccchhHHHH
Confidence 9999999999999998 5555544454444 8999999999999999999999999999
Q ss_pred HHHHHHHcCChhHHHHHHHHHHhcCC
Q 012143 295 LANAYYLTGDHRSSGKCLEKAAKLEP 320 (470)
Q Consensus 295 la~~~~~~g~~~~A~~~~~~a~~~~p 320 (470)
....-.+.|+.+.+...|++++.+.-
T Consensus 1640 Yid~eik~~~~~~vR~lfeRvi~l~l 1665 (1710)
T KOG1070|consen 1640 YIDMEIKHGDIKYVRDLFERVIELKL 1665 (1710)
T ss_pred HHHHHHccCCHHHHHHHHHHHHhcCC
Confidence 99999999999999999999998653
|
|
| >PRK10803 tol-pal system protein YbgF; Provisional | Back alignment and domain information |
|---|
Probab=99.08 E-value=4.1e-09 Score=89.45 Aligned_cols=96 Identities=14% Similarity=0.212 Sum_probs=88.0
Q ss_pred cCcccHHHHHHHHHHhhhcCccc---hHHHHHHHHHHHHcCChHHHHHHHHHHhhcCCC---ChHHHHHHHHHHHHcCCH
Q 012143 143 LEPEELEEILSKLKESMQSDTRQ---AVVWNTLGLILLKSGRLQSSISVLSSLLAVDPN---NCDCIGNLGIAYFQSGDM 216 (470)
Q Consensus 143 ~~~~~~~~A~~~~~~~~~~~p~~---~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~---~~~~~~~la~~~~~~g~~ 216 (470)
++.|++++|+..|+..+...|++ +.+++.+|.+|+..|++++|+..|+++++..|+ .+++++.+|.++..+|++
T Consensus 154 ~~~~~y~~Ai~af~~fl~~yP~s~~a~~A~y~LG~~y~~~g~~~~A~~~f~~vv~~yP~s~~~~dAl~klg~~~~~~g~~ 233 (263)
T PRK10803 154 QDKSRQDDAIVAFQNFVKKYPDSTYQPNANYWLGQLNYNKGKKDDAAYYFASVVKNYPKSPKAADAMFKVGVIMQDKGDT 233 (263)
T ss_pred HhcCCHHHHHHHHHHHHHHCcCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCCcchhHHHHHHHHHHHHcCCH
Confidence 45688999999999999999988 579999999999999999999999999988776 478999999999999999
Q ss_pred HHHHHHHHHHHhhCCCChHHHH
Q 012143 217 EQSAKCFQDLILKDQNHPAALI 238 (470)
Q Consensus 217 ~~A~~~~~~~l~~~p~~~~~~~ 238 (470)
++|+..|+++++..|+...+..
T Consensus 234 ~~A~~~~~~vi~~yP~s~~a~~ 255 (263)
T PRK10803 234 AKAKAVYQQVIKKYPGTDGAKQ 255 (263)
T ss_pred HHHHHHHHHHHHHCcCCHHHHH
Confidence 9999999999999999876543
|
|
| >PRK10153 DNA-binding transcriptional activator CadC; Provisional | Back alignment and domain information |
|---|
Probab=99.07 E-value=8.4e-09 Score=96.58 Aligned_cols=126 Identities=11% Similarity=0.095 Sum_probs=107.0
Q ss_pred CcccHHHHHHHHHHhhhcCccchHHHHHHHHHHHHcC--------ChHHHHHHHHHHhhc--CCCChHHHHHHHHHHHHc
Q 012143 144 EPEELEEILSKLKESMQSDTRQAVVWNTLGLILLKSG--------RLQSSISVLSSLLAV--DPNNCDCIGNLGIAYFQS 213 (470)
Q Consensus 144 ~~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~~--------~~~~A~~~~~~a~~~--~~~~~~~~~~la~~~~~~ 213 (470)
..+++..|+.+|+++++.+|+++.++..++.++.... +...+.....+++.+ +|.++.++..+|..+...
T Consensus 354 ~~~~~~~A~~lle~Ai~ldP~~a~a~A~la~~~~~~~~~~~~~~~~l~~a~~~~~~a~al~~~~~~~~~~~ala~~~~~~ 433 (517)
T PRK10153 354 DAKSLNKASDLLEEILKSEPDFTYAQAEKALADIVRHSQQPLDEKQLAALSTELDNIVALPELNVLPRIYEILAVQALVK 433 (517)
T ss_pred CHHHHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHHHhcCCccHHHHHHHHHHHHHhhhcccCcCChHHHHHHHHHHHhc
Confidence 3466789999999999999999999999888876642 234566666676664 777788999999999999
Q ss_pred CCHHHHHHHHHHHHhhCCCChHHHHHHHHHHHhhhcccccccccchhhhhHHHhcCCHHHHHHHHHHHHhcCCCCHHH
Q 012143 214 GDMEQSAKCFQDLILKDQNHPAALINYAALLLCKYGSVLAGAGANTGEGACLDQASAVNVAKECLLAALKADPKAAHI 291 (470)
Q Consensus 214 g~~~~A~~~~~~~l~~~p~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~ 291 (470)
|++++|...+++++.++| +..++..+|.++. ..|++++|++.|++++.++|.++..
T Consensus 434 g~~~~A~~~l~rAl~L~p-s~~a~~~lG~~~~---------------------~~G~~~eA~~~~~~A~~L~P~~pt~ 489 (517)
T PRK10153 434 GKTDEAYQAINKAIDLEM-SWLNYVLLGKVYE---------------------LKGDNRLAADAYSTAFNLRPGENTL 489 (517)
T ss_pred CCHHHHHHHHHHHHHcCC-CHHHHHHHHHHHH---------------------HcCCHHHHHHHHHHHHhcCCCCchH
Confidence 999999999999999999 4778888887776 7999999999999999999997753
|
|
| >KOG0543 consensus FKBP-type peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=99.07 E-value=5.8e-09 Score=90.21 Aligned_cols=134 Identities=16% Similarity=0.184 Sum_probs=114.7
Q ss_pred HHHHHHHHHHHHcCChHHHHHHHHHHhhcCCC----C-----------hHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCC
Q 012143 167 VVWNTLGLILLKSGRLQSSISVLSSLLAVDPN----N-----------CDCIGNLGIAYFQSGDMEQSAKCFQDLILKDQ 231 (470)
Q Consensus 167 ~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~----~-----------~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p 231 (470)
......|..+++.|+|..|...|++++..-+. + ..++.+++.|+.++++|.+|+....++|.++|
T Consensus 209 ~~~ke~Gn~~fK~gk~~~A~~~Yerav~~l~~~~~~~~ee~~~~~~~k~~~~lNlA~c~lKl~~~~~Ai~~c~kvLe~~~ 288 (397)
T KOG0543|consen 209 DRKKERGNVLFKEGKFKLAKKRYERAVSFLEYRRSFDEEEQKKAEALKLACHLNLAACYLKLKEYKEAIESCNKVLELDP 288 (397)
T ss_pred HHHHHhhhHHHhhchHHHHHHHHHHHHHHhhccccCCHHHHHHHHHHHHHHhhHHHHHHHhhhhHHHHHHHHHHHHhcCC
Confidence 34556799999999999999999998875321 1 24789999999999999999999999999999
Q ss_pred CChHHHHHHHHHHHhhhcccccccccchhhhhHHHhcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCChhHH-HH
Q 012143 232 NHPAALINYAALLLCKYGSVLAGAGANTGEGACLDQASAVNVAKECLLAALKADPKAAHIWANLANAYYLTGDHRSS-GK 310 (470)
Q Consensus 232 ~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~la~~~~~~g~~~~A-~~ 310 (470)
+|..+++..|.++. ..|+++.|+..|+++++++|+|-.+...+..+-.+..++.+. .+
T Consensus 289 ~N~KALyRrG~A~l---------------------~~~e~~~A~~df~ka~k~~P~Nka~~~el~~l~~k~~~~~~kekk 347 (397)
T KOG0543|consen 289 NNVKALYRRGQALL---------------------ALGEYDLARDDFQKALKLEPSNKAARAELIKLKQKIREYEEKEKK 347 (397)
T ss_pred CchhHHHHHHHHHH---------------------hhccHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999998888 699999999999999999999999999999988887776654 77
Q ss_pred HHHHHHhcCCC
Q 012143 311 CLEKAAKLEPN 321 (470)
Q Consensus 311 ~~~~a~~~~p~ 321 (470)
.|.+++...+.
T Consensus 348 ~y~~mF~k~~~ 358 (397)
T KOG0543|consen 348 MYANMFAKLAE 358 (397)
T ss_pred HHHHHhhcccc
Confidence 88888876553
|
|
| >PF12895 Apc3: Anaphase-promoting complex, cyclosome, subunit 3; PDB: 3KAE_D 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2XPI_A 3ULQ_A | Back alignment and domain information |
|---|
Probab=99.07 E-value=5.3e-10 Score=77.77 Aligned_cols=82 Identities=28% Similarity=0.403 Sum_probs=70.9
Q ss_pred HcCChHHHHHHHHHHhhcCCC--ChHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCChHHHHHHHHHHHhhhccccccc
Q 012143 178 KSGRLQSSISVLSSLLAVDPN--NCDCIGNLGIAYFQSGDMEQSAKCFQDLILKDQNHPAALINYAALLLCKYGSVLAGA 255 (470)
Q Consensus 178 ~~~~~~~A~~~~~~a~~~~~~--~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~l~~~~~~~~~~~~~~~ 255 (470)
.+|++++|+..++++++.+|. +...++.+|.++++.|++++|+..+++ ...+|.+....+.+|.++.
T Consensus 1 ~~~~y~~Ai~~~~k~~~~~~~~~~~~~~~~la~~~~~~~~y~~A~~~~~~-~~~~~~~~~~~~l~a~~~~---------- 69 (84)
T PF12895_consen 1 DQGNYENAIKYYEKLLELDPTNPNSAYLYNLAQCYFQQGKYEEAIELLQK-LKLDPSNPDIHYLLARCLL---------- 69 (84)
T ss_dssp HTT-HHHHHHHHHHHHHHHCGTHHHHHHHHHHHHHHHTTHHHHHHHHHHC-HTHHHCHHHHHHHHHHHHH----------
T ss_pred CCccHHHHHHHHHHHHHHCCCChhHHHHHHHHHHHHHCCCHHHHHHHHHH-hCCCCCCHHHHHHHHHHHH----------
Confidence 368999999999999999995 466788899999999999999999999 8888888888777777776
Q ss_pred ccchhhhhHHHhcCCHHHHHHHHHHH
Q 012143 256 GANTGEGACLDQASAVNVAKECLLAA 281 (470)
Q Consensus 256 ~~~~~~~~~~~~~~~~~~A~~~~~~~ 281 (470)
+.|++++|+++|+++
T Consensus 70 -----------~l~~y~eAi~~l~~~ 84 (84)
T PF12895_consen 70 -----------KLGKYEEAIKALEKA 84 (84)
T ss_dssp -----------HTT-HHHHHHHHHHH
T ss_pred -----------HhCCHHHHHHHHhcC
Confidence 799999999999875
|
|
| >PRK15331 chaperone protein SicA; Provisional | Back alignment and domain information |
|---|
Probab=99.07 E-value=6.4e-09 Score=78.99 Aligned_cols=107 Identities=11% Similarity=0.040 Sum_probs=82.7
Q ss_pred hhcCccchHHHHHHHHHHHHcCChHHHHHHHHHHhhcCCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCChHHHH
Q 012143 159 MQSDTRQAVVWNTLGLILLKSGRLQSSISVLSSLLAVDPNNCDCIGNLGIAYFQSGDMEQSAKCFQDLILKDQNHPAALI 238 (470)
Q Consensus 159 ~~~~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~ 238 (470)
..+.++..+..+..|.-++..|++++|...|+-....+|.+++.+..||.++..+++|++|+..|..+..++++++...+
T Consensus 30 ~gis~~~le~iY~~Ay~~y~~Gk~~eA~~~F~~L~~~d~~n~~Y~~GLaa~~Q~~k~y~~Ai~~Y~~A~~l~~~dp~p~f 109 (165)
T PRK15331 30 HGIPQDMMDGLYAHAYEFYNQGRLDEAETFFRFLCIYDFYNPDYTMGLAAVCQLKKQFQKACDLYAVAFTLLKNDYRPVF 109 (165)
T ss_pred hCCCHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCcCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccCCCCccc
Confidence 33455556677778888888888888888888888888888888888888888888888888888888888887777777
Q ss_pred HHHHHHHhhhcccccccccchhhhhHHHhcCCHHHHHHHHHHHHhcCCC
Q 012143 239 NYAALLLCKYGSVLAGAGANTGEGACLDQASAVNVAKECLLAALKADPK 287 (470)
Q Consensus 239 ~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~p~ 287 (470)
..|.+++ ..|+.+.|+.+|..++. .|.
T Consensus 110 ~agqC~l---------------------~l~~~~~A~~~f~~a~~-~~~ 136 (165)
T PRK15331 110 FTGQCQL---------------------LMRKAAKARQCFELVNE-RTE 136 (165)
T ss_pred hHHHHHH---------------------HhCCHHHHHHHHHHHHh-Ccc
Confidence 7776666 67888888888888777 344
|
|
| >PF12688 TPR_5: Tetratrico peptide repeat | Back alignment and domain information |
|---|
Probab=99.04 E-value=1.2e-08 Score=74.79 Aligned_cols=97 Identities=18% Similarity=0.136 Sum_probs=76.7
Q ss_pred hHHHHHHHHHHHHcCChHHHHHHHHHHhhcCCCC---hHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCC---ChHHHHH
Q 012143 166 AVVWNTLGLILLKSGRLQSSISVLSSLLAVDPNN---CDCIGNLGIAYFQSGDMEQSAKCFQDLILKDQN---HPAALIN 239 (470)
Q Consensus 166 ~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~---~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~---~~~~~~~ 239 (470)
+.+++.+|.++-..|+.++|+..|++++...... ..+++.+|.++..+|++++|+..+++.+...|+ +......
T Consensus 1 ~~~~~~~A~a~d~~G~~~~Ai~~Y~~Al~~gL~~~~~~~a~i~lastlr~LG~~deA~~~L~~~~~~~p~~~~~~~l~~f 80 (120)
T PF12688_consen 1 PRALYELAWAHDSLGREEEAIPLYRRALAAGLSGADRRRALIQLASTLRNLGRYDEALALLEEALEEFPDDELNAALRVF 80 (120)
T ss_pred CchHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCccccHHHHHH
Confidence 3567888889999999999999999998875443 567888999999999999999999998888777 5555555
Q ss_pred HHHHHHhhhcccccccccchhhhhHHHhcCCHHHHHHHHHHHHh
Q 012143 240 YAALLLCKYGSVLAGAGANTGEGACLDQASAVNVAKECLLAALK 283 (470)
Q Consensus 240 l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~ 283 (470)
++.++. ..|++++|+..+..++.
T Consensus 81 ~Al~L~---------------------~~gr~~eAl~~~l~~la 103 (120)
T PF12688_consen 81 LALALY---------------------NLGRPKEALEWLLEALA 103 (120)
T ss_pred HHHHHH---------------------HCCCHHHHHHHHHHHHH
Confidence 555555 68888888888877764
|
|
| >COG0457 NrfG FOG: TPR repeat [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.03 E-value=6.1e-07 Score=77.45 Aligned_cols=222 Identities=26% Similarity=0.230 Sum_probs=170.6
Q ss_pred ccHHHHHHHHHHhhhcCcc--chHHHHHHHHHHHHcCChHHHHHHHHHHhh--cCCCChHHHHHHHHHHHHcCCHHHHHH
Q 012143 146 EELEEILSKLKESMQSDTR--QAVVWNTLGLILLKSGRLQSSISVLSSLLA--VDPNNCDCIGNLGIAYFQSGDMEQSAK 221 (470)
Q Consensus 146 ~~~~~A~~~~~~~~~~~p~--~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~--~~~~~~~~~~~la~~~~~~g~~~~A~~ 221 (470)
+.+..+...+...+...+. ........+..+...+.+..+...+...+. ..+.....+...+..+...+++..++.
T Consensus 37 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 116 (291)
T COG0457 37 GELAEALELLEEALELLPNSDLAGLLLLLALALLKLGRLEEALELLEKALELELLPNLAEALLNLGLLLEALGKYEEALE 116 (291)
T ss_pred hhHHHHHHHHHHHHhcCccccchHHHHHHHHHHHHcccHHHHHHHHHHHHhhhhccchHHHHHHHHHHHHHHhhHHHHHH
Confidence 3457777778888777776 367888889999999999999999999987 688888899999999999999999999
Q ss_pred HHHHHHhhCCCChHHHHHHHH-HHHhhhcccccccccchhhhhHHHhcCCHHHHHHHHHHHHhcCC---CCHHHHHHHHH
Q 012143 222 CFQDLILKDQNHPAALINYAA-LLLCKYGSVLAGAGANTGEGACLDQASAVNVAKECLLAALKADP---KAAHIWANLAN 297 (470)
Q Consensus 222 ~~~~~l~~~p~~~~~~~~l~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~p---~~~~~~~~la~ 297 (470)
.+..++...+........... ++ ...|+++.|...+.+++...| .........+.
T Consensus 117 ~~~~~~~~~~~~~~~~~~~~~~~~---------------------~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~ 175 (291)
T COG0457 117 LLEKALALDPDPDLAEALLALGAL---------------------YELGDYEEALELYEKALELDPELNELAEALLALGA 175 (291)
T ss_pred HHHHHHcCCCCcchHHHHHHHHHH---------------------HHcCCHHHHHHHHHHHHhcCCCccchHHHHHHhhh
Confidence 999999887776444333333 33 378999999999999988776 45666777777
Q ss_pred HHHHcCChhHHHHHHHHHHhcCCCcccHHHHHHHHHHHHhhhccCchHHhhhhHHHHHHHhhcCCCCCCCcHHHHHHHHH
Q 012143 298 AYYLTGDHRSSGKCLEKAAKLEPNCMSTRYAVAVSRIKDAERSQEPTEQLSWAGNEMASILREGDPVQIEPPIAWAGFAA 377 (470)
Q Consensus 298 ~~~~~g~~~~A~~~~~~a~~~~p~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ 377 (470)
.+...++++.|+..+.+++...+.. ....+..++.
T Consensus 176 ~~~~~~~~~~a~~~~~~~~~~~~~~---------------------------------------------~~~~~~~~~~ 210 (291)
T COG0457 176 LLEALGRYEEALELLEKALKLNPDD---------------------------------------------DAEALLNLGL 210 (291)
T ss_pred HHHHhcCHHHHHHHHHHHHhhCccc---------------------------------------------chHHHHHhhH
Confidence 7888899999999999999888774 1235556666
Q ss_pred HHhccccHHHHHHHHHHHhcchh--hhhHhhHHHHHHHhccHHHHHHHHHHHHhcCCC
Q 012143 378 VQKTHHEVAAAFETEENELSKME--ECAGAGESAFLDQASAVNVAKECLLAALKADPK 433 (470)
Q Consensus 378 ~~~~~~~~~~A~~~~~~~~~~~~--~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~p~ 433 (470)
.+...+++..|+..+...+...+ ...+...+..+...+.++++...+.+++...|.
T Consensus 211 ~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 268 (291)
T COG0457 211 LYLKLGKYEEALEYYEKALELDPDNAEALYNLALLLLELGRYEEALEALEKALELDPD 268 (291)
T ss_pred HHHHcccHHHHHHHHHHHHhhCcccHHHHhhHHHHHHHcCCHHHHHHHHHHHHHhCcc
Confidence 66666777777777777665444 345556666666666688888888888887776
|
|
| >PRK15331 chaperone protein SicA; Provisional | Back alignment and domain information |
|---|
Probab=99.02 E-value=4.5e-09 Score=79.84 Aligned_cols=108 Identities=12% Similarity=0.152 Sum_probs=98.7
Q ss_pred HhhcCCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCChHHHHHHHHHHHhhhcccccccccchhhhhHHHhcCCH
Q 012143 192 LLAVDPNNCDCIGNLGIAYFQSGDMEQSAKCFQDLILKDQNHPAALINYAALLLCKYGSVLAGAGANTGEGACLDQASAV 271 (470)
Q Consensus 192 a~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 271 (470)
+..+.++..+..+..|.-++..|++++|...|+-....+|.++..+..+|.++. ..++|
T Consensus 29 l~gis~~~le~iY~~Ay~~y~~Gk~~eA~~~F~~L~~~d~~n~~Y~~GLaa~~Q---------------------~~k~y 87 (165)
T PRK15331 29 VHGIPQDMMDGLYAHAYEFYNQGRLDEAETFFRFLCIYDFYNPDYTMGLAAVCQ---------------------LKKQF 87 (165)
T ss_pred HhCCCHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCcCcHHHHHHHHHHHH---------------------HHHHH
Confidence 334566667788999999999999999999999999999999999999888887 69999
Q ss_pred HHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCChhHHHHHHHHHHhcCCC
Q 012143 272 NVAKECLLAALKADPKAAHIWANLANAYYLTGDHRSSGKCLEKAAKLEPN 321 (470)
Q Consensus 272 ~~A~~~~~~~~~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~p~ 321 (470)
++|+..|..+..++++++...+..|.|+..+|+.+.|+.+|+.++. .|.
T Consensus 88 ~~Ai~~Y~~A~~l~~~dp~p~f~agqC~l~l~~~~~A~~~f~~a~~-~~~ 136 (165)
T PRK15331 88 QKACDLYAVAFTLLKNDYRPVFFTGQCQLLMRKAAKARQCFELVNE-RTE 136 (165)
T ss_pred HHHHHHHHHHHHcccCCCCccchHHHHHHHhCCHHHHHHHHHHHHh-Ccc
Confidence 9999999999999999999999999999999999999999999998 344
|
|
| >KOG4648 consensus Uncharacterized conserved protein, contains LRR repeats [Function unknown] | Back alignment and domain information |
|---|
Probab=99.01 E-value=4.4e-10 Score=94.07 Aligned_cols=179 Identities=9% Similarity=-0.007 Sum_probs=133.6
Q ss_pred ccCcccHHHHHHHHHHhhhcCccchHHHHHHHHHHHHcCChHHHHHHHHHHhhcCCCChHHHHHHHHHHHHcCCHHHHHH
Q 012143 142 ELEPEELEEILSKLKESMQSDTRQAVVWNTLGLILLKSGRLQSSISVLSSLLAVDPNNCDCIGNLGIAYFQSGDMEQSAK 221 (470)
Q Consensus 142 ~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~la~~~~~~g~~~~A~~ 221 (470)
|+++|.|++|+.+|.+++..+|.++..+.+.+.+|+++..+..|...+..++.++.....+|...|..-..+|+..+|.+
T Consensus 107 yFKQgKy~EAIDCYs~~ia~~P~NpV~~~NRA~AYlk~K~FA~AE~DC~~AiaLd~~Y~KAYSRR~~AR~~Lg~~~EAKk 186 (536)
T KOG4648|consen 107 YFKQGKYEEAIDCYSTAIAVYPHNPVYHINRALAYLKQKSFAQAEEDCEAAIALDKLYVKAYSRRMQARESLGNNMEAKK 186 (536)
T ss_pred hhhccchhHHHHHhhhhhccCCCCccchhhHHHHHHHHHHHHHHHHhHHHHHHhhHHHHHHHHHHHHHHHHHhhHHHHHH
Confidence 78999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHhhCCCChHHHHHHHHHHHhhhcccccc--------------cccchhhhhHHHhcCCHHHHHHHHHHHHhcCCC
Q 012143 222 CFQDLILKDQNHPAALINYAALLLCKYGSVLAG--------------AGANTGEGACLDQASAVNVAKECLLAALKADPK 287 (470)
Q Consensus 222 ~~~~~l~~~p~~~~~~~~l~~~~~~~~~~~~~~--------------~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~p~ 287 (470)
.++.++++.|++.+....++.+-.-........ .-..-.-|..+...|.++.++.++.+.+....+
T Consensus 187 D~E~vL~LEP~~~ELkK~~a~i~Sl~E~~I~~KsT~G~~~A~Q~~~Q~l~~K~~G~~Fsk~~~~~~~i~~~~~~~A~~~~ 266 (536)
T KOG4648|consen 187 DCETVLALEPKNIELKKSLARINSLRERKIATKSTPGFTPARQGMIQILPIKKPGYKFSKKAMRSVPVVDVVSPRATIDD 266 (536)
T ss_pred hHHHHHhhCcccHHHHHHHHHhcchHhhhHHhhcCCCCCccccchhhhccccCcchhhhhhhccccceeEeeccccccCc
Confidence 999999999998877666555433221111100 000112355566666777777766666555444
Q ss_pred CHHHHHHHHHHHHHcCChhHHHHHHHHHHhcCCC
Q 012143 288 AAHIWANLANAYYLTGDHRSSGKCLEKAAKLEPN 321 (470)
Q Consensus 288 ~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~p~ 321 (470)
+.....+ +..+.+..+++.++.-.-+++..+|.
T Consensus 267 ~~~L~~~-~~~~~KI~~~~~~~~~~~~~~~~~~s 299 (536)
T KOG4648|consen 267 SNQLRIS-DEDIDKIFNSNCGIIEEVKKTNPKPT 299 (536)
T ss_pred cccCccc-HHHHHHHhhcchhHHHHHHhcCCCCC
Confidence 3333333 55555666666666655555555444
|
|
| >KOG1941 consensus Acetylcholine receptor-associated protein of the synapse (rapsyn) [Extracellular structures] | Back alignment and domain information |
|---|
Probab=99.01 E-value=2.2e-07 Score=78.90 Aligned_cols=244 Identities=15% Similarity=0.040 Sum_probs=166.8
Q ss_pred hhhcccchhhhhcChhhHHHHHHHHHHhCCCCh---hHHHHHHHHHHHhCChhHHHHHHHHHHHHHhhhhcccchhhhHH
Q 012143 43 QSGLGTSSSSREEKVSSLKTGLVHVARKMPKNA---HAHFLLGLMYQRLGQPLKAVSSYEKAEEILLRCEADIARPELLS 119 (470)
Q Consensus 43 ~~~~~~~~~~~~~~~~~A~~~~~~~l~~~p~~~---~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~ 119 (470)
....|.- ++...+.++|+....+.+..-.+.. ..+-.+..+...+|.+++++.+--..+....+- .+...
T Consensus 9 q~~~g~~-Ly~s~~~~~al~~w~~~L~~l~~~~~Rf~~lG~l~~a~s~~g~y~~mL~~a~sqi~~a~~~------~ds~~ 81 (518)
T KOG1941|consen 9 QIEKGLQ-LYQSNQTEKALQVWTKVLEKLSDLMGRFRVLGCLVTAHSEMGRYKEMLKFAVSQIDTAREL------EDSDF 81 (518)
T ss_pred HHHHHHh-HhcCchHHHHHHHHHHHHHHHHHHHHHHHHhccchhhhhhhHHHHHHHHHHHHHHHHHHHH------HHHHH
Confidence 4455666 7777788888888887776543332 244455667778888887766554444432211 11222
Q ss_pred HHHHhhhccccccccCCCccccccCcccHHHHHHHHHHhhhcCccc-----hHHHHHHHHHHHHcCChHHHHHHHHHHhh
Q 012143 120 LVQIHHAQCLLPESSGDNSLDKELEPEELEEILSKLKESMQSDTRQ-----AVVWNTLGLILLKSGRLQSSISVLSSLLA 194 (470)
Q Consensus 120 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~p~~-----~~~~~~l~~~~~~~~~~~~A~~~~~~a~~ 194 (470)
...++.+++..+. +..++.+++.+.+.-+...... ..+...+|.++..++.++++++.|+++++
T Consensus 82 ~~ea~lnlar~~e-----------~l~~f~kt~~y~k~~l~lpgt~~~~~~gq~~l~~~~Ahlgls~fq~~Lesfe~A~~ 150 (518)
T KOG1941|consen 82 LLEAYLNLARSNE-----------KLCEFHKTISYCKTCLGLPGTRAGQLGGQVSLSMGNAHLGLSVFQKALESFEKALR 150 (518)
T ss_pred HHHHHHHHHHHHH-----------HHHHhhhHHHHHHHHhcCCCCCcccccchhhhhHHHHhhhHHHHHHHHHHHHHHHH
Confidence 2334444443332 2334567777766655543222 24677799999999999999999999998
Q ss_pred cCCCC------hHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCC----CChHHHHHHHHHHHhhhcccccccccchhhhhH
Q 012143 195 VDPNN------CDCIGNLGIAYFQSGDMEQSAKCFQDLILKDQ----NHPAALINYAALLLCKYGSVLAGAGANTGEGAC 264 (470)
Q Consensus 195 ~~~~~------~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p----~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~ 264 (470)
...++ ..++..+|..+.+..++++|.-+..++.++-. ++....+.-...|. ++..
T Consensus 151 ~A~~~~D~~LElqvcv~Lgslf~~l~D~~Kal~f~~kA~~lv~s~~l~d~~~kyr~~~lyh---------------maVa 215 (518)
T KOG1941|consen 151 YAHNNDDAMLELQVCVSLGSLFAQLKDYEKALFFPCKAAELVNSYGLKDWSLKYRAMSLYH---------------MAVA 215 (518)
T ss_pred HhhccCCceeeeehhhhHHHHHHHHHhhhHHhhhhHhHHHHHHhcCcCchhHHHHHHHHHH---------------HHHH
Confidence 74433 24788999999999999999999999887632 33333333333333 4667
Q ss_pred HHhcCCHHHHHHHHHHHHhcC------CCCHHHHHHHHHHHHHcCChhHHHHHHHHHHhcC
Q 012143 265 LDQASAVNVAKECLLAALKAD------PKAAHIWANLANAYYLTGDHRSSGKCLEKAAKLE 319 (470)
Q Consensus 265 ~~~~~~~~~A~~~~~~~~~~~------p~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~ 319 (470)
+...|+..+|.++.+++.++. +........+|.+|...|+.+.|..-|+.+....
T Consensus 216 lR~~G~LgdA~e~C~Ea~klal~~Gdra~~arc~~~~aDIyR~~gd~e~af~rYe~Am~~m 276 (518)
T KOG1941|consen 216 LRLLGRLGDAMECCEEAMKLALQHGDRALQARCLLCFADIYRSRGDLERAFRRYEQAMGTM 276 (518)
T ss_pred HHHhcccccHHHHHHHHHHHHHHhCChHHHHHHHHHHHHHHHhcccHhHHHHHHHHHHHHH
Confidence 778999999999999988763 2245667889999999999999999999988654
|
|
| >KOG3617 consensus WD40 and TPR repeat-containing protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.01 E-value=9.7e-07 Score=82.92 Aligned_cols=209 Identities=11% Similarity=0.073 Sum_probs=125.4
Q ss_pred CcchhhhcccchhhhhcChhhHHHHHHH--------HHH---hCCCChhHHHHHHHHHHHhCChhHHHHHHHHHHHHHhh
Q 012143 39 ADGDQSGLGTSSSSREEKVSSLKTGLVH--------VAR---KMPKNAHAHFLLGLMYQRLGQPLKAVSSYEKAEEILLR 107 (470)
Q Consensus 39 ~~~~~~~~~~~~~~~~~~~~~A~~~~~~--------~l~---~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~ 107 (470)
+...|-+++.+ ..+..+++-|.-++-. ++. .+|+ +.-...+.+..+.|-.++|...|++.-+.+--
T Consensus 756 S~~vW~nmA~M-cVkT~RLDVAkVClGhm~~aRgaRAlR~a~q~~~--e~eakvAvLAieLgMlEeA~~lYr~ckR~DLl 832 (1416)
T KOG3617|consen 756 SDSVWDNMASM-CVKTRRLDVAKVCLGHMKNARGARALRRAQQNGE--EDEAKVAVLAIELGMLEEALILYRQCKRYDLL 832 (1416)
T ss_pred hhHHHHHHHHH-hhhhccccHHHHhhhhhhhhhhHHHHHHHHhCCc--chhhHHHHHHHHHhhHHHHHHHHHHHHHHHHH
Confidence 44467777776 6666666666554422 111 1232 22334555666777777777777776554210
Q ss_pred hhcccchhhhHHHHHHhhhccccccccCCCccccccCcccHHHHHHHHHHhhhcCccchHHHHHHHHHHHHcCChHHHHH
Q 012143 108 CEADIARPELLSLVQIHHAQCLLPESSGDNSLDKELEPEELEEILSKLKESMQSDTRQAVVWNTLGLILLKSGRLQSSIS 187 (470)
Q Consensus 108 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~~~~~~A~~ 187 (470)
+ .+ |...|.+++|.++.+.--++.- -..|++.+.-+...++.+.|++
T Consensus 833 N-----------------Kl--------------yQs~g~w~eA~eiAE~~DRiHL--r~Tyy~yA~~Lear~Di~~Ale 879 (1416)
T KOG3617|consen 833 N-----------------KL--------------YQSQGMWSEAFEIAETKDRIHL--RNTYYNYAKYLEARRDIEAALE 879 (1416)
T ss_pred H-----------------HH--------------HHhcccHHHHHHHHhhccceeh--hhhHHHHHHHHHhhccHHHHHH
Confidence 0 00 3455666777766554333322 2456777777777777888888
Q ss_pred HHHHHh----------hcCC----------CChHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCChHHHHHHHHHHHhh
Q 012143 188 VLSSLL----------AVDP----------NNCDCIGNLGIAYFQSGDMEQSAKCFQDLILKDQNHPAALINYAALLLCK 247 (470)
Q Consensus 188 ~~~~a~----------~~~~----------~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~l~~~~~~~ 247 (470)
+|+++- .-+| .++..|...|......|+.+.|+.+|..+-. |+.+..+.
T Consensus 880 yyEK~~~hafev~rmL~e~p~~~e~Yv~~~~d~~L~~WWgqYlES~GemdaAl~~Y~~A~D--------~fs~VrI~--- 948 (1416)
T KOG3617|consen 880 YYEKAGVHAFEVFRMLKEYPKQIEQYVRRKRDESLYSWWGQYLESVGEMDAALSFYSSAKD--------YFSMVRIK--- 948 (1416)
T ss_pred HHHhcCChHHHHHHHHHhChHHHHHHHHhccchHHHHHHHHHHhcccchHHHHHHHHHhhh--------hhhheeeE---
Confidence 877641 1122 2344566666667777777777777766532 22222222
Q ss_pred hcccccccccchhhhhHHHhcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCChhHHHHHHHHHHh
Q 012143 248 YGSVLAGAGANTGEGACLDQASAVNVAKECLLAALKADPKAAHIWANLANAYYLTGDHRSSGKCLEKAAK 317 (470)
Q Consensus 248 ~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~ 317 (470)
+-+|+.++|-.+.+ ...+..+.+.+|+.|...|+..+|+..|.++-.
T Consensus 949 ------------------C~qGk~~kAa~iA~-----esgd~AAcYhlaR~YEn~g~v~~Av~FfTrAqa 995 (1416)
T KOG3617|consen 949 ------------------CIQGKTDKAARIAE-----ESGDKAACYHLARMYENDGDVVKAVKFFTRAQA 995 (1416)
T ss_pred ------------------eeccCchHHHHHHH-----hcccHHHHHHHHHHhhhhHHHHHHHHHHHHHHH
Confidence 24677777765544 345677889999999999999999998887643
|
|
| >PRK10803 tol-pal system protein YbgF; Provisional | Back alignment and domain information |
|---|
Probab=99.00 E-value=2.3e-08 Score=84.95 Aligned_cols=107 Identities=14% Similarity=0.182 Sum_probs=91.8
Q ss_pred chHHHHHHHHHH-HHcCChHHHHHHHHHHhhcCCCC---hHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCC---hHHH
Q 012143 165 QAVVWNTLGLIL-LKSGRLQSSISVLSSLLAVDPNN---CDCIGNLGIAYFQSGDMEQSAKCFQDLILKDQNH---PAAL 237 (470)
Q Consensus 165 ~~~~~~~l~~~~-~~~~~~~~A~~~~~~a~~~~~~~---~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~---~~~~ 237 (470)
+....+..|..+ ...|+|++|+..|+..++..|++ +.+++.+|.+|+..|++++|+..|++++...|++ +.++
T Consensus 141 ~e~~~Y~~A~~l~~~~~~y~~Ai~af~~fl~~yP~s~~a~~A~y~LG~~y~~~g~~~~A~~~f~~vv~~yP~s~~~~dAl 220 (263)
T PRK10803 141 DANTDYNAAIALVQDKSRQDDAIVAFQNFVKKYPDSTYQPNANYWLGQLNYNKGKKDDAAYYFASVVKNYPKSPKAADAM 220 (263)
T ss_pred CHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHCcCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCCcchhHHH
Confidence 346677777766 66799999999999999999998 5799999999999999999999999999988875 5566
Q ss_pred HHHHHHHHhhhcccccccccchhhhhHHHhcCCHHHHHHHHHHHHhcCCCCHHHH
Q 012143 238 INYAALLLCKYGSVLAGAGANTGEGACLDQASAVNVAKECLLAALKADPKAAHIW 292 (470)
Q Consensus 238 ~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~ 292 (470)
+.+|.++. ..|++++|+..|+++++..|+...+.
T Consensus 221 ~klg~~~~---------------------~~g~~~~A~~~~~~vi~~yP~s~~a~ 254 (263)
T PRK10803 221 FKVGVIMQ---------------------DKGDTAKAKAVYQQVIKKYPGTDGAK 254 (263)
T ss_pred HHHHHHHH---------------------HcCCHHHHHHHHHHHHHHCcCCHHHH
Confidence 66666665 79999999999999999999876543
|
|
| >PF09295 ChAPs: ChAPs (Chs5p-Arf1p-binding proteins); InterPro: IPR015374 ChAPs (Chs5p-Arf1p-binding proteins) are required for the export of specialised cargo from the Golgi | Back alignment and domain information |
|---|
Probab=98.99 E-value=2.8e-08 Score=88.85 Aligned_cols=124 Identities=22% Similarity=0.276 Sum_probs=109.7
Q ss_pred HHHHHHHHcCChHHHHHHHHHHhhcCCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCChHHHHHHHHHHHhhhcc
Q 012143 171 TLGLILLKSGRLQSSISVLSSLLAVDPNNCDCIGNLGIAYFQSGDMEQSAKCFQDLILKDQNHPAALINYAALLLCKYGS 250 (470)
Q Consensus 171 ~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~l~~~~~~~~~~ 250 (470)
.+-..+...++++.|+..+++..+.+|+ +...++.++...++..+|+..+.+++...|.+...+...+..+.
T Consensus 174 ~Ll~~l~~t~~~~~ai~lle~L~~~~pe---v~~~LA~v~l~~~~E~~AI~ll~~aL~~~p~d~~LL~~Qa~fLl----- 245 (395)
T PF09295_consen 174 TLLKYLSLTQRYDEAIELLEKLRERDPE---VAVLLARVYLLMNEEVEAIRLLNEALKENPQDSELLNLQAEFLL----- 245 (395)
T ss_pred HHHHHHhhcccHHHHHHHHHHHHhcCCc---HHHHHHHHHHhcCcHHHHHHHHHHHHHhCCCCHHHHHHHHHHHH-----
Confidence 3455666779999999999999888765 66779999999999999999999999999999888877777776
Q ss_pred cccccccchhhhhHHHhcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCChhHHHHHHHHHHhc
Q 012143 251 VLAGAGANTGEGACLDQASAVNVAKECLLAALKADPKAAHIWANLANAYYLTGDHRSSGKCLEKAAKL 318 (470)
Q Consensus 251 ~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~ 318 (470)
..++++.|+.+.++++...|++...|..|+.+|...|+++.|+..+..+--.
T Consensus 246 ----------------~k~~~~lAL~iAk~av~lsP~~f~~W~~La~~Yi~~~d~e~ALlaLNs~Pm~ 297 (395)
T PF09295_consen 246 ----------------SKKKYELALEIAKKAVELSPSEFETWYQLAECYIQLGDFENALLALNSCPML 297 (395)
T ss_pred ----------------hcCCHHHHHHHHHHHHHhCchhHHHHHHHHHHHHhcCCHHHHHHHHhcCcCC
Confidence 7999999999999999999999999999999999999999999888755433
|
They physically interact with Chs3, Chs5 and the small GTPase Arf1, and they also form interactions with each other []. |
| >KOG1070 consensus rRNA processing protein Rrp5 [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=98.98 E-value=1.4e-07 Score=93.21 Aligned_cols=221 Identities=10% Similarity=0.104 Sum_probs=180.3
Q ss_pred hhhhHHHHHHHHHHHHhcCCCCcchhhhcccchhhhhcChhhHHHHHHHHHHh-CCCCh----hHHHHHHHHHHHhCChh
Q 012143 18 LGKCRSRISSKMDSALEFGVDADGDQSGLGTSSSSREEKVSSLKTGLVHVARK-MPKNA----HAHFLLGLMYQRLGQPL 92 (470)
Q Consensus 18 ~g~~~~a~~~~~~~~l~~~p~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~-~p~~~----~~~~~l~~~~~~~g~~~ 92 (470)
+++..+.. +.+++.+.-+|++.-.|...-.- ....++++.|++..+++|.. ++.-. ..|..+-+....-|.-+
T Consensus 1437 l~~~pesa-eDferlvrssPNSSi~WI~YMaf-~LelsEiekAR~iaerAL~tIN~REeeEKLNiWiA~lNlEn~yG~ee 1514 (1710)
T KOG1070|consen 1437 LSRAPESA-EDFERLVRSSPNSSILWIRYMAF-HLELSEIEKARKIAERALKTINFREEEEKLNIWIAYLNLENAYGTEE 1514 (1710)
T ss_pred cccCCcCH-HHHHHHHhcCCCcchHHHHHHHH-HhhhhhhHHHHHHHHHHhhhCCcchhHHHHHHHHHHHhHHHhhCcHH
Confidence 33333344 68999999999999999987777 88999999999999999864 44432 35555555555557667
Q ss_pred HHHHHHHHHHHHHhhhhcccchhhhHHHHHHhhhccccccccCCCccccccCcccHHHHHHHHHHhhhcCccchHHHHHH
Q 012143 93 KAVSSYEKAEEILLRCEADIARPELLSLVQIHHAQCLLPESSGDNSLDKELEPEELEEILSKLKESMQSDTRQAVVWNTL 172 (470)
Q Consensus 93 ~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~l 172 (470)
.-.+.|++|.+.+.. ..+|..++-+| ...+.+++|.++++.+++........|..+
T Consensus 1515 sl~kVFeRAcqycd~-------------~~V~~~L~~iy-----------~k~ek~~~A~ell~~m~KKF~q~~~vW~~y 1570 (1710)
T KOG1070|consen 1515 SLKKVFERACQYCDA-------------YTVHLKLLGIY-----------EKSEKNDEADELLRLMLKKFGQTRKVWIMY 1570 (1710)
T ss_pred HHHHHHHHHHHhcch-------------HHHHHHHHHHH-----------HHhhcchhHHHHHHHHHHHhcchhhHHHHH
Confidence 777888888775311 12344444443 455667999999999999988889999999
Q ss_pred HHHHHHcCChHHHHHHHHHHhhcCCC--ChHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCChHHHHHHHHHHHhhhcc
Q 012143 173 GLILLKSGRLQSSISVLSSLLAVDPN--NCDCIGNLGIAYFQSGDMEQSAKCFQDLILKDQNHPAALINYAALLLCKYGS 250 (470)
Q Consensus 173 ~~~~~~~~~~~~A~~~~~~a~~~~~~--~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~l~~~~~~~~~~ 250 (470)
|..++++++-+.|...+.+|++.-|. +.......|.+-++.|+.+.+...|+..+..+|...+.|..+...-.
T Consensus 1571 ~~fLl~~ne~~aa~~lL~rAL~~lPk~eHv~~IskfAqLEFk~GDaeRGRtlfEgll~ayPKRtDlW~VYid~ei----- 1645 (1710)
T KOG1070|consen 1571 ADFLLRQNEAEAARELLKRALKSLPKQEHVEFISKFAQLEFKYGDAERGRTLFEGLLSAYPKRTDLWSVYIDMEI----- 1645 (1710)
T ss_pred HHHHhcccHHHHHHHHHHHHHhhcchhhhHHHHHHHHHHHhhcCCchhhHHHHHHHHhhCccchhHHHHHHHHHH-----
Confidence 99999999999999999999999998 77888999999999999999999999999999999999998887766
Q ss_pred cccccccchhhhhHHHhcCCHHHHHHHHHHHHhcC
Q 012143 251 VLAGAGANTGEGACLDQASAVNVAKECLLAALKAD 285 (470)
Q Consensus 251 ~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~ 285 (470)
+.|+.+.+...|++++.+.
T Consensus 1646 ----------------k~~~~~~vR~lfeRvi~l~ 1664 (1710)
T KOG1070|consen 1646 ----------------KHGDIKYVRDLFERVIELK 1664 (1710)
T ss_pred ----------------ccCCHHHHHHHHHHHHhcC
Confidence 7899999999999999864
|
|
| >COG4105 ComL DNA uptake lipoprotein [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.97 E-value=3.3e-07 Score=74.96 Aligned_cols=177 Identities=17% Similarity=0.173 Sum_probs=135.0
Q ss_pred cCcccHHHHHHHHHHhhhcCccc---hHHHHHHHHHHHHcCChHHHHHHHHHHhhcCCCChH---HHHHHHHHHHHc---
Q 012143 143 LEPEELEEILSKLKESMQSDTRQ---AVVWNTLGLILLKSGRLQSSISVLSSLLAVDPNNCD---CIGNLGIAYFQS--- 213 (470)
Q Consensus 143 ~~~~~~~~A~~~~~~~~~~~p~~---~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~---~~~~la~~~~~~--- 213 (470)
++.|++++|+..|+.+....|.. ..+...++.++++.+++++|+...++.+.+.|.++. +++..|.+++..
T Consensus 45 L~~gn~~~A~~~fe~l~~~~p~s~~~~qa~l~l~yA~Yk~~~y~~A~~~~drFi~lyP~~~n~dY~~YlkgLs~~~~i~~ 124 (254)
T COG4105 45 LQKGNYEEAIKYFEALDSRHPFSPYSEQAQLDLAYAYYKNGEYDLALAYIDRFIRLYPTHPNADYAYYLKGLSYFFQIDD 124 (254)
T ss_pred HhcCCHHHHHHHHHHHHHcCCCCcccHHHHHHHHHHHHhcccHHHHHHHHHHHHHhCCCCCChhHHHHHHHHHHhccCCc
Confidence 57899999999999999988765 468889999999999999999999999999988754 677888887643
Q ss_pred -----CCHHHHHHHHHHHHhhCCCChHHHHHHHHHHHhhhcccccccccchhhhhHHHhcCCHHHHHHHHHHHHhcCCC-
Q 012143 214 -----GDMEQSAKCFQDLILKDQNHPAALINYAALLLCKYGSVLAGAGANTGEGACLDQASAVNVAKECLLAALKADPK- 287 (470)
Q Consensus 214 -----g~~~~A~~~~~~~l~~~p~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~p~- 287 (470)
.-..+|+..|+..+...|+..-+-.....+-... ..-++.-..+|..|.+.|.+..|+.-++.+++..|+
T Consensus 125 ~~rDq~~~~~A~~~f~~~i~ryPnS~Ya~dA~~~i~~~~----d~LA~~Em~IaryY~kr~~~~AA~nR~~~v~e~y~~t 200 (254)
T COG4105 125 VTRDQSAARAAFAAFKELVQRYPNSRYAPDAKARIVKLN----DALAGHEMAIARYYLKRGAYVAAINRFEEVLENYPDT 200 (254)
T ss_pred cccCHHHHHHHHHHHHHHHHHCCCCcchhhHHHHHHHHH----HHHHHHHHHHHHHHHHhcChHHHHHHHHHHHhccccc
Confidence 2356788889999999998754322222111100 001233455789999999999999999999999877
Q ss_pred --CHHHHHHHHHHHHHcCChhHHHHHHHHHHhcCCCcc
Q 012143 288 --AAHIWANLANAYYLTGDHRSSGKCLEKAAKLEPNCM 323 (470)
Q Consensus 288 --~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~p~~~ 323 (470)
..+++..+..+|..+|-.++|...-+-.-...|++.
T Consensus 201 ~~~~eaL~~l~eaY~~lgl~~~a~~~~~vl~~N~p~s~ 238 (254)
T COG4105 201 SAVREALARLEEAYYALGLTDEAKKTAKVLGANYPDSQ 238 (254)
T ss_pred cchHHHHHHHHHHHHHhCChHHHHHHHHHHHhcCCCCc
Confidence 356788888999999999999776544444445543
|
|
| >KOG4648 consensus Uncharacterized conserved protein, contains LRR repeats [Function unknown] | Back alignment and domain information |
|---|
Probab=98.97 E-value=5.7e-10 Score=93.43 Aligned_cols=107 Identities=21% Similarity=0.177 Sum_probs=72.7
Q ss_pred HHHHHHHHHHcCChHHHHHHHHHHhhcCCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCChHHHHHHHHHHHhhh
Q 012143 169 WNTLGLILLKSGRLQSSISVLSSLLAVDPNNCDCIGNLGIAYFQSGDMEQSAKCFQDLILKDQNHPAALINYAALLLCKY 248 (470)
Q Consensus 169 ~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~l~~~~~~~~ 248 (470)
+-..|.-|+.+|.|++|+.||.+++..+|.++..+.+.+..|+++..+..|......++.++.....++...+....
T Consensus 100 iKE~GN~yFKQgKy~EAIDCYs~~ia~~P~NpV~~~NRA~AYlk~K~FA~AE~DC~~AiaLd~~Y~KAYSRR~~AR~--- 176 (536)
T KOG4648|consen 100 IKERGNTYFKQGKYEEAIDCYSTAIAVYPHNPVYHINRALAYLKQKSFAQAEEDCEAAIALDKLYVKAYSRRMQARE--- 176 (536)
T ss_pred HHHhhhhhhhccchhHHHHHhhhhhccCCCCccchhhHHHHHHHHHHHHHHHHhHHHHHHhhHHHHHHHHHHHHHHH---
Confidence 44567777777777777777777777777777777777777777777777777777777766666666655555544
Q ss_pred cccccccccchhhhhHHHhcCCHHHHHHHHHHHHhcCCCCHHHHHHHH
Q 012143 249 GSVLAGAGANTGEGACLDQASAVNVAKECLLAALKADPKAAHIWANLA 296 (470)
Q Consensus 249 ~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~la 296 (470)
.+|...+|.+-++.++++.|++.+....++
T Consensus 177 ------------------~Lg~~~EAKkD~E~vL~LEP~~~ELkK~~a 206 (536)
T KOG4648|consen 177 ------------------SLGNNMEAKKDCETVLALEPKNIELKKSLA 206 (536)
T ss_pred ------------------HHhhHHHHHHhHHHHHhhCcccHHHHHHHH
Confidence 466677777777777777776554444433
|
|
| >COG0457 NrfG FOG: TPR repeat [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.95 E-value=6.9e-07 Score=77.12 Aligned_cols=183 Identities=22% Similarity=0.287 Sum_probs=86.3
Q ss_pred HHHHHHHhcCCCC--cchhhhcccchhhhhcChhhHHHHHHHHHH--hCCCChhHHHHHHHHHHHhCChhHHHHHHHHHH
Q 012143 27 SKMDSALEFGVDA--DGDQSGLGTSSSSREEKVSSLKTGLVHVAR--KMPKNAHAHFLLGLMYQRLGQPLKAVSSYEKAE 102 (470)
Q Consensus 27 ~~~~~~l~~~p~~--~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~--~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al 102 (470)
..+...+...+.. .......+.. ....+.+..+...+...+. ..+.....+...|..+...+++..++..+..++
T Consensus 44 ~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 122 (291)
T COG0457 44 ELLEEALELLPNSDLAGLLLLLALA-LLKLGRLEEALELLEKALELELLPNLAEALLNLGLLLEALGKYEEALELLEKAL 122 (291)
T ss_pred HHHHHHHhcCccccchHHHHHHHHH-HHHcccHHHHHHHHHHHHhhhhccchHHHHHHHHHHHHHHhhHHHHHHHHHHHH
Confidence 3444444444432 3444445555 5556666666666666554 455555666666666666666666666666655
Q ss_pred HHHhhhhcccchhhhHHHHHHhhhccccccccCCCccccccCcccHHHHHHHHHHhhhcCc---cchHHHHHHHHHHHHc
Q 012143 103 EILLRCEADIARPELLSLVQIHHAQCLLPESSGDNSLDKELEPEELEEILSKLKESMQSDT---RQAVVWNTLGLILLKS 179 (470)
Q Consensus 103 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~p---~~~~~~~~l~~~~~~~ 179 (470)
...+.+... ..+...+ + +...|+++.|...+.+++...| .........+..+...
T Consensus 123 ~~~~~~~~~----------~~~~~~~-~-----------~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 180 (291)
T COG0457 123 ALDPDPDLA----------EALLALG-A-----------LYELGDYEEALELYEKALELDPELNELAEALLALGALLEAL 180 (291)
T ss_pred cCCCCcchH----------HHHHHHH-H-----------HHHcCCHHHHHHHHHHHHhcCCCccchHHHHHHhhhHHHHh
Confidence 543222000 0000000 0 2233444555555555444333 2233333334444444
Q ss_pred CChHHHHHHHHHHhhcCCC-ChHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCC
Q 012143 180 GRLQSSISVLSSLLAVDPN-NCDCIGNLGIAYFQSGDMEQSAKCFQDLILKDQN 232 (470)
Q Consensus 180 ~~~~~A~~~~~~a~~~~~~-~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~ 232 (470)
++++.|+..+.+++...+. ....+..++..+...+++++|+..+..++...|.
T Consensus 181 ~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~ 234 (291)
T COG0457 181 GRYEEALELLEKALKLNPDDDAEALLNLGLLYLKLGKYEEALEYYEKALELDPD 234 (291)
T ss_pred cCHHHHHHHHHHHHhhCcccchHHHHHhhHHHHHcccHHHHHHHHHHHHhhCcc
Confidence 4555555555555544444 3444444444444444445555555544444444
|
|
| >PF14559 TPR_19: Tetratricopeptide repeat; PDB: 2R5S_A 3QDN_B 3QOU_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 3FP3_A 3LCA_A | Back alignment and domain information |
|---|
Probab=98.94 E-value=2.4e-09 Score=71.20 Aligned_cols=63 Identities=22% Similarity=0.325 Sum_probs=34.8
Q ss_pred cccHHHHHHHHHHhhhcCccchHHHHHHHHHHHHcCChHHHHHHHHHHhhcCCCChHHHHHHH
Q 012143 145 PEELEEILSKLKESMQSDTRQAVVWNTLGLILLKSGRLQSSISVLSSLLAVDPNNCDCIGNLG 207 (470)
Q Consensus 145 ~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~la 207 (470)
.|++++|+..|++++..+|+++.+++.+|.++...|++++|...+++++..+|+++..+..++
T Consensus 4 ~~~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~l~~~~~~~~~~~~~~~l~a 66 (68)
T PF14559_consen 4 QGDYDEAIELLEKALQRNPDNPEARLLLAQCYLKQGQYDEAEELLERLLKQDPDNPEYQQLLA 66 (68)
T ss_dssp TTHHHHHHHHHHHHHHHTTTSHHHHHHHHHHHHHTT-HHHHHHHHHCCHGGGTTHHHHHHHHH
T ss_pred ccCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCcCHHHHHHHHh
Confidence 455555555555555555555555555555555555555555555555555555554444443
|
... |
| >PF14559 TPR_19: Tetratricopeptide repeat; PDB: 2R5S_A 3QDN_B 3QOU_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 3FP3_A 3LCA_A | Back alignment and domain information |
|---|
Probab=98.93 E-value=4e-09 Score=70.15 Aligned_cols=67 Identities=24% Similarity=0.412 Sum_probs=60.7
Q ss_pred HHHcCChHHHHHHHHHHhhcCCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCChHHHHHHHH
Q 012143 176 LLKSGRLQSSISVLSSLLAVDPNNCDCIGNLGIAYFQSGDMEQSAKCFQDLILKDQNHPAALINYAA 242 (470)
Q Consensus 176 ~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~l~~ 242 (470)
++..|++++|+..|++++..+|++..+++.+|.++...|++++|...+++++..+|+++..+..++.
T Consensus 1 ll~~~~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~l~~~~~~~~~~~~~~~l~a~ 67 (68)
T PF14559_consen 1 LLKQGDYDEAIELLEKALQRNPDNPEARLLLAQCYLKQGQYDEAEELLERLLKQDPDNPEYQQLLAQ 67 (68)
T ss_dssp HHHTTHHHHHHHHHHHHHHHTTTSHHHHHHHHHHHHHTT-HHHHHHHHHCCHGGGTTHHHHHHHHHH
T ss_pred ChhccCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCcCHHHHHHHHhc
Confidence 3578999999999999999999999999999999999999999999999999999998777665553
|
... |
| >PF13371 TPR_9: Tetratricopeptide repeat | Back alignment and domain information |
|---|
Probab=98.91 E-value=9.6e-09 Score=69.39 Aligned_cols=68 Identities=19% Similarity=0.254 Sum_probs=56.2
Q ss_pred HHHHHHcCChHHHHHHHHHHhhcCCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCChHHHHHH
Q 012143 173 GLILLKSGRLQSSISVLSSLLAVDPNNCDCIGNLGIAYFQSGDMEQSAKCFQDLILKDQNHPAALINY 240 (470)
Q Consensus 173 ~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~l 240 (470)
..+|...+++++|++++++++.++|+++..+..+|.++..+|++++|+..++++++..|+++......
T Consensus 2 ~~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~~a~~~~~~g~~~~A~~~l~~~l~~~p~~~~~~~~~ 69 (73)
T PF13371_consen 2 KQIYLQQEDYEEALEVLERALELDPDDPELWLQRARCLFQLGRYEEALEDLERALELSPDDPDARALR 69 (73)
T ss_pred HHHHHhCCCHHHHHHHHHHHHHhCcccchhhHHHHHHHHHhccHHHHHHHHHHHHHHCCCcHHHHHHH
Confidence 46778888888888888888888888888888888888888888888888888888888877665443
|
|
| >KOG3617 consensus WD40 and TPR repeat-containing protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.90 E-value=4.3e-06 Score=78.75 Aligned_cols=313 Identities=14% Similarity=0.090 Sum_probs=181.4
Q ss_pred hhhhhhhhhHHHHHHHHHHHHhcCCCCcchhhhcccchhhhhcChhhHHHHHHHHHHhCCCChhHHHHHHHHHHHhCChh
Q 012143 13 KKINKLGKCRSRISSKMDSALEFGVDADGDQSGLGTSSSSREEKVSSLKTGLVHVARKMPKNAHAHFLLGLMYQRLGQPL 92 (470)
Q Consensus 13 ~~~~~~g~~~~a~~~~~~~~l~~~p~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~l~~~~~~~g~~~ 92 (470)
..+..+++.+.+- .+.++.+. |++.+ ...+.. ....|-+++|...|++.-. +-.+-..|...|.++
T Consensus 778 VClGhm~~aRgaR--AlR~a~q~-~~e~e--akvAvL-AieLgMlEeA~~lYr~ckR--------~DLlNKlyQs~g~w~ 843 (1416)
T KOG3617|consen 778 VCLGHMKNARGAR--ALRRAQQN-GEEDE--AKVAVL-AIELGMLEEALILYRQCKR--------YDLLNKLYQSQGMWS 843 (1416)
T ss_pred HhhhhhhhhhhHH--HHHHHHhC-Ccchh--hHHHHH-HHHHhhHHHHHHHHHHHHH--------HHHHHHHHHhcccHH
Confidence 3456677777664 66666554 33332 223334 6667778899988887543 334566777788888
Q ss_pred HHHHHHHHHHHHHhhhhcccchhhhHHHHHHhhhccccccccCCCccccccCcccHHHHHHHHHHh----------hhcC
Q 012143 93 KAVSSYEKAEEILLRCEADIARPELLSLVQIHHAQCLLPESSGDNSLDKELEPEELEEILSKLKES----------MQSD 162 (470)
Q Consensus 93 ~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~----------~~~~ 162 (470)
+|.+.-+.-=+ ..+-..|++.+.-+ -..++.+.|+++|+++ +..+
T Consensus 844 eA~eiAE~~DR--------------iHLr~Tyy~yA~~L-----------ear~Di~~AleyyEK~~~hafev~rmL~e~ 898 (1416)
T KOG3617|consen 844 EAFEIAETKDR--------------IHLRNTYYNYAKYL-----------EARRDIEAALEYYEKAGVHAFEVFRMLKEY 898 (1416)
T ss_pred HHHHHHhhccc--------------eehhhhHHHHHHHH-----------HhhccHHHHHHHHHhcCChHHHHHHHHHhC
Confidence 87776543211 11122233333322 2345567888888765 3334
Q ss_pred cc----------chHHHHHHHHHHHHcCChHHHHHHHHHHhhc---------------------CCCChHHHHHHHHHHH
Q 012143 163 TR----------QAVVWNTLGLILLKSGRLQSSISVLSSLLAV---------------------DPNNCDCIGNLGIAYF 211 (470)
Q Consensus 163 p~----------~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~---------------------~~~~~~~~~~la~~~~ 211 (470)
|. ++..|...|..+...|+.+.|+.+|..+-.. ...+..+.+.+|+.|.
T Consensus 899 p~~~e~Yv~~~~d~~L~~WWgqYlES~GemdaAl~~Y~~A~D~fs~VrI~C~qGk~~kAa~iA~esgd~AAcYhlaR~YE 978 (1416)
T KOG3617|consen 899 PKQIEQYVRRKRDESLYSWWGQYLESVGEMDAALSFYSSAKDYFSMVRIKCIQGKTDKAARIAEESGDKAACYHLARMYE 978 (1416)
T ss_pred hHHHHHHHHhccchHHHHHHHHHHhcccchHHHHHHHHHhhhhhhheeeEeeccCchHHHHHHHhcccHHHHHHHHHHhh
Confidence 42 3567778899999999999999999987442 2345668899999999
Q ss_pred HcCCHHHHHHHHHHHHhh------CCCChHHHHHHHHHHHhhhcccccccccchhhhh--------------HHHhcCCH
Q 012143 212 QSGDMEQSAKCFQDLILK------DQNHPAALINYAALLLCKYGSVLAGAGANTGEGA--------------CLDQASAV 271 (470)
Q Consensus 212 ~~g~~~~A~~~~~~~l~~------~p~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~--------------~~~~~~~~ 271 (470)
..|++.+|+..|.++-.. ...+. ..-.+..+..... .......+. +|.+.|.+
T Consensus 979 n~g~v~~Av~FfTrAqafsnAIRlcKEnd-~~d~L~nlal~s~------~~d~v~aArYyEe~g~~~~~AVmLYHkAGm~ 1051 (1416)
T KOG3617|consen 979 NDGDVVKAVKFFTRAQAFSNAIRLCKEND-MKDRLANLALMSG------GSDLVSAARYYEELGGYAHKAVMLYHKAGMI 1051 (1416)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHhcC-HHHHHHHHHhhcC------chhHHHHHHHHHHcchhhhHHHHHHHhhcch
Confidence 999999999999887543 22111 0111222211111 111122233 34444555
Q ss_pred HHHHHHHHH-----H---H--hcCCC-CHHHHHHHHHHHHHcCChhHHHHHHHHHH------hcCCCcccHHHHHHHHHH
Q 012143 272 NVAKECLLA-----A---L--KADPK-AAHIWANLANAYYLTGDHRSSGKCLEKAA------KLEPNCMSTRYAVAVSRI 334 (470)
Q Consensus 272 ~~A~~~~~~-----~---~--~~~p~-~~~~~~~la~~~~~~g~~~~A~~~~~~a~------~~~p~~~~~~~~l~~~~~ 334 (470)
.+|++..-+ + | .++|+ ++......+..+....+|++|...+-.+- ++..+...
T Consensus 1052 ~kALelAF~tqQf~aL~lIa~DLd~~sDp~ll~RcadFF~~~~qyekAV~lL~~ar~~~~AlqlC~~~nv---------- 1121 (1416)
T KOG3617|consen 1052 GKALELAFRTQQFSALDLIAKDLDAGSDPKLLRRCADFFENNQQYEKAVNLLCLAREFSGALQLCKNRNV---------- 1121 (1416)
T ss_pred HHHHHHHHhhcccHHHHHHHHhcCCCCCHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHhcCCC----------
Confidence 544443221 1 1 22443 67888888888889999999887765443 32221100
Q ss_pred HHhhhccCchHHhhhhHHHHHHHhhcCCCCCC---CcHHHHHHHHHHHhccccHHHHHHHHHHH
Q 012143 335 KDAERSQEPTEQLSWAGNEMASILREGDPVQI---EPPIAWAGFAAVQKTHHEVAAAFETEENE 395 (470)
Q Consensus 335 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~l~~~~~~~~~~~~A~~~~~~~ 395 (470)
..-+++...+.......| ....++..+|.+..++|.|..|-+-|.++
T Consensus 1122 --------------~vtee~aE~mTp~Kd~~~~e~~R~~vLeqvae~c~qQG~Yh~AtKKfTQA 1171 (1416)
T KOG3617|consen 1122 --------------RVTEEFAELMTPTKDDMPNEQERKQVLEQVAELCLQQGAYHAATKKFTQA 1171 (1416)
T ss_pred --------------chhHHHHHhcCcCcCCCccHHHHHHHHHHHHHHHHhccchHHHHHHHhhh
Confidence 001122222222221122 23457788999999999999888887763
|
|
| >COG1729 Uncharacterized protein conserved in bacteria [Function unknown] | Back alignment and domain information |
|---|
Probab=98.89 E-value=6e-08 Score=80.06 Aligned_cols=98 Identities=14% Similarity=0.230 Sum_probs=89.6
Q ss_pred ccCcccHHHHHHHHHHhhhcCccc---hHHHHHHHHHHHHcCChHHHHHHHHHHhhcCCCC---hHHHHHHHHHHHHcCC
Q 012143 142 ELEPEELEEILSKLKESMQSDTRQ---AVVWNTLGLILLKSGRLQSSISVLSSLLAVDPNN---CDCIGNLGIAYFQSGD 215 (470)
Q Consensus 142 ~~~~~~~~~A~~~~~~~~~~~p~~---~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~---~~~~~~la~~~~~~g~ 215 (470)
++..|+|..|...|...++..|+. +.+++.||.+++.+|++++|...|..+++-.|++ +++++.+|.+...+|+
T Consensus 151 ~~ksgdy~~A~~~F~~fi~~YP~s~~~~nA~yWLGe~~y~qg~y~~Aa~~f~~~~k~~P~s~KApdallKlg~~~~~l~~ 230 (262)
T COG1729 151 LYKSGDYAEAEQAFQAFIKKYPNSTYTPNAYYWLGESLYAQGDYEDAAYIFARVVKDYPKSPKAPDALLKLGVSLGRLGN 230 (262)
T ss_pred HHHcCCHHHHHHHHHHHHHcCCCCcccchhHHHHHHHHHhcccchHHHHHHHHHHHhCCCCCCChHHHHHHHHHHHHhcC
Confidence 357788999999999999999976 6799999999999999999999999999987765 6899999999999999
Q ss_pred HHHHHHHHHHHHhhCCCChHHHHH
Q 012143 216 MEQSAKCFQDLILKDQNHPAALIN 239 (470)
Q Consensus 216 ~~~A~~~~~~~l~~~p~~~~~~~~ 239 (470)
.++|...|+++++..|+...+...
T Consensus 231 ~d~A~atl~qv~k~YP~t~aA~~A 254 (262)
T COG1729 231 TDEACATLQQVIKRYPGTDAAKLA 254 (262)
T ss_pred HHHHHHHHHHHHHHCCCCHHHHHH
Confidence 999999999999999999877554
|
|
| >KOG3081 consensus Vesicle coat complex COPI, epsilon subunit [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=98.88 E-value=2.9e-06 Score=69.28 Aligned_cols=243 Identities=14% Similarity=0.043 Sum_probs=164.7
Q ss_pred CcccHHHHHHHHHHhhhcCccchHHHHHHHHHHHHcCChHHHHHHHHHHhhcCCCChHHHHHHHHHHHHcCCHHHHHHHH
Q 012143 144 EPEELEEILSKLKESMQSDTRQAVVWNTLGLILLKSGRLQSSISVLSSLLAVDPNNCDCIGNLGIAYFQSGDMEQSAKCF 223 (470)
Q Consensus 144 ~~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~ 223 (470)
=.|+|..++..-.+..... ..+.....+...|..+|++..-+......- .....+...++.....-++.+.-+...
T Consensus 20 Y~Gnyq~~ine~~~~~~~~-~~~e~d~y~~raylAlg~~~~~~~eI~~~~---~~~lqAvr~~a~~~~~e~~~~~~~~~l 95 (299)
T KOG3081|consen 20 YLGNYQQCINEAEKFSSSK-TDVELDVYMYRAYLALGQYQIVISEIKEGK---ATPLQAVRLLAEYLELESNKKSILASL 95 (299)
T ss_pred HhhHHHHHHHHHHhhcccc-chhHHHHHHHHHHHHccccccccccccccc---CChHHHHHHHHHHhhCcchhHHHHHHH
Confidence 3466777777766655443 666777778888888888776665444332 122345566666666666666666555
Q ss_pred HHHHhhCCCChH-HHHHHHHHHHhhhcccccccccchhhhhHHHhcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHc
Q 012143 224 QDLILKDQNHPA-ALINYAALLLCKYGSVLAGAGANTGEGACLDQASAVNVAKECLLAALKADPKAAHIWANLANAYYLT 302 (470)
Q Consensus 224 ~~~l~~~p~~~~-~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~la~~~~~~ 302 (470)
.+.+........ .+..++ |.++...|++++|++..... .+.++...--.++.++
T Consensus 96 ~E~~a~~~~~sn~i~~l~a--------------------a~i~~~~~~~deAl~~~~~~-----~~lE~~Al~VqI~lk~ 150 (299)
T KOG3081|consen 96 YELVADSTDGSNLIDLLLA--------------------AIIYMHDGDFDEALKALHLG-----ENLEAAALNVQILLKM 150 (299)
T ss_pred HHHHHhhccchhHHHHHHh--------------------hHHhhcCCChHHHHHHHhcc-----chHHHHHHHHHHHHHH
Confidence 554433222222 222222 34445899999999887763 2456666667788889
Q ss_pred CChhHHHHHHHHHHhcCCCcccHHHHHHHHHHHHhhhccCchHHhhhhHHHHHHHhhcCCCCCCCcHHHHHHHHHHHhcc
Q 012143 303 GDHRSSGKCLEKAAKLEPNCMSTRYAVAVSRIKDAERSQEPTEQLSWAGNEMASILREGDPVQIEPPIAWAGFAAVQKTH 382 (470)
Q Consensus 303 g~~~~A~~~~~~a~~~~p~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 382 (470)
.+.+-|...++++.+++.+... ..+ +.+|..++ ...
T Consensus 151 ~r~d~A~~~lk~mq~ided~tL--tQL---------------------------------------A~awv~la---~gg 186 (299)
T KOG3081|consen 151 HRFDLAEKELKKMQQIDEDATL--TQL---------------------------------------AQAWVKLA---TGG 186 (299)
T ss_pred HHHHHHHHHHHHHHccchHHHH--HHH---------------------------------------HHHHHHHh---ccc
Confidence 9999999999999888766321 111 12333332 233
Q ss_pred ccHHHHHHHHHHHhc--chhhhhHhhHHHHHHHhccHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHcCChHHHHHHHH
Q 012143 383 HEVAAAFETEENELS--KMEECAGAGESAFLDQASAVNVAKECLLAALKADPKAAHIWANLANAYYLTGDHRSSGKCLE 459 (470)
Q Consensus 383 ~~~~~A~~~~~~~~~--~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~ 459 (470)
+++..|.-.|+..-+ +.......+.+.|...+++|++|...++.++..++++++++.++-.+-...|...++..-+-
T Consensus 187 ek~qdAfyifeE~s~k~~~T~~llnG~Av~~l~~~~~eeAe~lL~eaL~kd~~dpetL~Nliv~a~~~Gkd~~~~~r~l 265 (299)
T KOG3081|consen 187 EKIQDAFYIFEELSEKTPPTPLLLNGQAVCHLQLGRYEEAESLLEEALDKDAKDPETLANLIVLALHLGKDAEVTERNL 265 (299)
T ss_pred hhhhhHHHHHHHHhcccCCChHHHccHHHHHHHhcCHHHHHHHHHHHHhccCCCHHHHHHHHHHHHHhCCChHHHHHHH
Confidence 457788888887655 34445677999999999999999999999999999999999999999999998876655443
|
|
| >KOG2053 consensus Mitochondrial inheritance and actin cytoskeleton organization protein [Cytoskeleton] | Back alignment and domain information |
|---|
Probab=98.88 E-value=8.8e-05 Score=71.01 Aligned_cols=228 Identities=13% Similarity=0.009 Sum_probs=150.0
Q ss_pred hhhhcChhhHHHHHHHHHHhCCCChhHHHHHHHHHHHhCChhHHHHHHHHHHHHHhhhhcccchhhhHHHHHHhhhcccc
Q 012143 51 SSREEKVSSLKTGLVHVARKMPKNAHAHFLLGLMYQRLGQPLKAVSSYEKAEEILLRCEADIARPELLSLVQIHHAQCLL 130 (470)
Q Consensus 51 ~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 130 (470)
....+++..|.....+.++.+|+..-+...-|..+.++|+.++|..+++..-...+++ ...+.. +-.+
T Consensus 19 ~ld~~qfkkal~~~~kllkk~Pn~~~a~vLkaLsl~r~gk~~ea~~~Le~~~~~~~~D------~~tLq~------l~~~ 86 (932)
T KOG2053|consen 19 LLDSSQFKKALAKLGKLLKKHPNALYAKVLKALSLFRLGKGDEALKLLEALYGLKGTD------DLTLQF------LQNV 86 (932)
T ss_pred HhhhHHHHHHHHHHHHHHHHCCCcHHHHHHHHHHHHHhcCchhHHHHHhhhccCCCCc------hHHHHH------HHHH
Confidence 3456788899999999999999999999999999999999999997666543332221 111111 1111
Q ss_pred ccccCCCccccccCcccHHHHHHHHHHhhhcCccchHHHHHHHHHHHHcCChHHHHHHHHHHhhcCCCChHHHHHHHHHH
Q 012143 131 PESSGDNSLDKELEPEELEEILSKLKESMQSDTRQAVVWNTLGLILLKSGRLQSSISVLSSLLAVDPNNCDCIGNLGIAY 210 (470)
Q Consensus 131 ~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~la~~~ 210 (470)
|.+.+++++|..+|++++..+|. .+.++.+-.+|.+.+.|.+-.+.--+..+..|+.+-.+.....+.
T Consensus 87 -----------y~d~~~~d~~~~~Ye~~~~~~P~-eell~~lFmayvR~~~yk~qQkaa~~LyK~~pk~~yyfWsV~Sli 154 (932)
T KOG2053|consen 87 -----------YRDLGKLDEAVHLYERANQKYPS-EELLYHLFMAYVREKSYKKQQKAALQLYKNFPKRAYYFWSVISLI 154 (932)
T ss_pred -----------HHHHhhhhHHHHHHHHHHhhCCc-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCcccchHHHHHHHH
Confidence 34566778999999999998988 777778888888888877665555555556777665433333333
Q ss_pred H-HcCCH---------HHHHHHHHHHHhhC-CCChHHHHHHHHHHHhhhcccccccccchhhhhHHHhcCCHHHHHHHHH
Q 012143 211 F-QSGDM---------EQSAKCFQDLILKD-QNHPAALINYAALLLCKYGSVLAGAGANTGEGACLDQASAVNVAKECLL 279 (470)
Q Consensus 211 ~-~~g~~---------~~A~~~~~~~l~~~-p~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~ 279 (470)
+ ..... .-|...+++.++.. +-...+ -+.++. .++...|++++|.+++.
T Consensus 155 lqs~~~~~~~~~~i~l~LA~~m~~~~l~~~gk~~s~a---E~~Lyl-----------------~iL~~~~k~~eal~~l~ 214 (932)
T KOG2053|consen 155 LQSIFSENELLDPILLALAEKMVQKLLEKKGKIESEA---EIILYL-----------------LILELQGKYQEALEFLA 214 (932)
T ss_pred HHhccCCcccccchhHHHHHHHHHHHhccCCccchHH---HHHHHH-----------------HHHHhcccHHHHHHHHH
Confidence 3 22222 23444555555544 111111 111111 34457899999999994
Q ss_pred H-HHhcCC-CCHHHHHHHHHHHHHcCChhHHHHHHHHHHhcCCCc
Q 012143 280 A-ALKADP-KAAHIWANLANAYYLTGDHRSSGKCLEKAAKLEPNC 322 (470)
Q Consensus 280 ~-~~~~~p-~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~p~~ 322 (470)
. ..+..+ .+...-......+...++|.+-.+...+.+...+++
T Consensus 215 ~~la~~l~~~~~~l~~~~~dllk~l~~w~~l~~l~~~Ll~k~~Dd 259 (932)
T KOG2053|consen 215 ITLAEKLTSANLYLENKKLDLLKLLNRWQELFELSSRLLEKGNDD 259 (932)
T ss_pred HHHHHhccccchHHHHHHHHHHHHhcChHHHHHHHHHHHHhCCcc
Confidence 3 333333 344455566778888999999999999999999887
|
|
| >PF12688 TPR_5: Tetratrico peptide repeat | Back alignment and domain information |
|---|
Probab=98.88 E-value=9.6e-08 Score=70.06 Aligned_cols=97 Identities=23% Similarity=0.159 Sum_probs=84.0
Q ss_pred hHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCC---hHHHHHHHHHHHhhhcccccccccchhhhhHHHhcCCHHHHHH
Q 012143 200 CDCIGNLGIAYFQSGDMEQSAKCFQDLILKDQNH---PAALINYAALLLCKYGSVLAGAGANTGEGACLDQASAVNVAKE 276 (470)
Q Consensus 200 ~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~---~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~ 276 (470)
+.+++.+|.++-..|+.++|+..|++++...... ..++..++..+. ..|++++|+.
T Consensus 1 ~~~~~~~A~a~d~~G~~~~Ai~~Y~~Al~~gL~~~~~~~a~i~lastlr---------------------~LG~~deA~~ 59 (120)
T PF12688_consen 1 PRALYELAWAHDSLGREEEAIPLYRRALAAGLSGADRRRALIQLASTLR---------------------NLGRYDEALA 59 (120)
T ss_pred CchHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCchHHHHHHHHHHHHHH---------------------HcCCHHHHHH
Confidence 3578999999999999999999999999976554 345555555555 7999999999
Q ss_pred HHHHHHhcCCC---CHHHHHHHHHHHHHcCChhHHHHHHHHHHh
Q 012143 277 CLLAALKADPK---AAHIWANLANAYYLTGDHRSSGKCLEKAAK 317 (470)
Q Consensus 277 ~~~~~~~~~p~---~~~~~~~la~~~~~~g~~~~A~~~~~~a~~ 317 (470)
.+++++...|+ +..+...++.++...|++++|+..+-.++.
T Consensus 60 ~L~~~~~~~p~~~~~~~l~~f~Al~L~~~gr~~eAl~~~l~~la 103 (120)
T PF12688_consen 60 LLEEALEEFPDDELNAALRVFLALALYNLGRPKEALEWLLEALA 103 (120)
T ss_pred HHHHHHHHCCCccccHHHHHHHHHHHHHCCCHHHHHHHHHHHHH
Confidence 99999999898 888889999999999999999999988775
|
|
| >KOG4234 consensus TPR repeat-containing protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.87 E-value=2.2e-08 Score=77.46 Aligned_cols=101 Identities=18% Similarity=0.247 Sum_probs=91.7
Q ss_pred ccCcccHHHHHHHHHHhhhcCccch-----HHHHHHHHHHHHcCChHHHHHHHHHHhhcCCCChHHHHHHHHHHHHcCCH
Q 012143 142 ELEPEELEEILSKLKESMQSDTRQA-----VVWNTLGLILLKSGRLQSSISVLSSLLAVDPNNCDCIGNLGIAYFQSGDM 216 (470)
Q Consensus 142 ~~~~~~~~~A~~~~~~~~~~~p~~~-----~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~la~~~~~~g~~ 216 (470)
++..|+|++|...|..++...|..+ ..|.+.|.+++.++.++.|+..+.++|+++|....++...|.+|.++..+
T Consensus 105 ~F~ngdyeeA~skY~~Ale~cp~~~~e~rsIly~Nraaa~iKl~k~e~aI~dcsKaiel~pty~kAl~RRAeayek~ek~ 184 (271)
T KOG4234|consen 105 LFKNGDYEEANSKYQEALESCPSTSTEERSILYSNRAAALIKLRKWESAIEDCSKAIELNPTYEKALERRAEAYEKMEKY 184 (271)
T ss_pred hhhcccHHHHHHHHHHHHHhCccccHHHHHHHHhhhHHHHHHhhhHHHHHHHHHhhHhcCchhHHHHHHHHHHHHhhhhH
Confidence 6789999999999999999998753 36778999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHhhCCCChHHHHHHHH
Q 012143 217 EQSAKCFQDLILKDQNHPAALINYAA 242 (470)
Q Consensus 217 ~~A~~~~~~~l~~~p~~~~~~~~l~~ 242 (470)
++|++.|+++++.+|....+......
T Consensus 185 eealeDyKki~E~dPs~~ear~~i~r 210 (271)
T KOG4234|consen 185 EEALEDYKKILESDPSRREAREAIAR 210 (271)
T ss_pred HHHHHHHHHHHHhCcchHHHHHHHHh
Confidence 99999999999999998766554443
|
|
| >PF09295 ChAPs: ChAPs (Chs5p-Arf1p-binding proteins); InterPro: IPR015374 ChAPs (Chs5p-Arf1p-binding proteins) are required for the export of specialised cargo from the Golgi | Back alignment and domain information |
|---|
Probab=98.84 E-value=1e-07 Score=85.34 Aligned_cols=115 Identities=13% Similarity=0.103 Sum_probs=106.0
Q ss_pred CcccHHHHHHHHHHhhhcCccchHHHHHHHHHHHHcCChHHHHHHHHHHhhcCCCChHHHHHHHHHHHHcCCHHHHHHHH
Q 012143 144 EPEELEEILSKLKESMQSDTRQAVVWNTLGLILLKSGRLQSSISVLSSLLAVDPNNCDCIGNLGIAYFQSGDMEQSAKCF 223 (470)
Q Consensus 144 ~~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~ 223 (470)
..++++.|+..+++..+.+|+ +...++.++...++..+|+..+.+++...|.+...+...+..+...++++.|+...
T Consensus 181 ~t~~~~~ai~lle~L~~~~pe---v~~~LA~v~l~~~~E~~AI~ll~~aL~~~p~d~~LL~~Qa~fLl~k~~~~lAL~iA 257 (395)
T PF09295_consen 181 LTQRYDEAIELLEKLRERDPE---VAVLLARVYLLMNEEVEAIRLLNEALKENPQDSELLNLQAEFLLSKKKYELALEIA 257 (395)
T ss_pred hcccHHHHHHHHHHHHhcCCc---HHHHHHHHHHhcCcHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhcCCHHHHHHHH
Confidence 446789999999999988865 56678999999999999999999999999999999999999999999999999999
Q ss_pred HHHHhhCCCChHHHHHHHHHHHhhhcccccccccchhhhhHHHhcCCHHHHHHHHHHHH
Q 012143 224 QDLILKDQNHPAALINYAALLLCKYGSVLAGAGANTGEGACLDQASAVNVAKECLLAAL 282 (470)
Q Consensus 224 ~~~l~~~p~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~ 282 (470)
++++...|++...|..|+.+|. ..|+++.|+-.++.+-
T Consensus 258 k~av~lsP~~f~~W~~La~~Yi---------------------~~~d~e~ALlaLNs~P 295 (395)
T PF09295_consen 258 KKAVELSPSEFETWYQLAECYI---------------------QLGDFENALLALNSCP 295 (395)
T ss_pred HHHHHhCchhHHHHHHHHHHHH---------------------hcCCHHHHHHHHhcCc
Confidence 9999999999999999999998 7999999998777543
|
They physically interact with Chs3, Chs5 and the small GTPase Arf1, and they also form interactions with each other []. |
| >KOG2053 consensus Mitochondrial inheritance and actin cytoskeleton organization protein [Cytoskeleton] | Back alignment and domain information |
|---|
Probab=98.84 E-value=8e-06 Score=77.78 Aligned_cols=236 Identities=13% Similarity=0.101 Sum_probs=151.6
Q ss_pred ccCcccHHHHHHHHHHhhhcCccchHHHHHHHHHHHHcCChHHHHHHHHHHhhcCCCChHHHHHHHHHHHHcCCHHHHHH
Q 012143 142 ELEPEELEEILSKLKESMQSDTRQAVVWNTLGLILLKSGRLQSSISVLSSLLAVDPNNCDCIGNLGIAYFQSGDMEQSAK 221 (470)
Q Consensus 142 ~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~la~~~~~~g~~~~A~~ 221 (470)
.+..+++.+|++.+.+.++..|+..-+....|.++.++|+.++|..+++..-...+++...+..+-.+|..+|+.++|..
T Consensus 19 ~ld~~qfkkal~~~~kllkk~Pn~~~a~vLkaLsl~r~gk~~ea~~~Le~~~~~~~~D~~tLq~l~~~y~d~~~~d~~~~ 98 (932)
T KOG2053|consen 19 LLDSSQFKKALAKLGKLLKKHPNALYAKVLKALSLFRLGKGDEALKLLEALYGLKGTDDLTLQFLQNVYRDLGKLDEAVH 98 (932)
T ss_pred HhhhHHHHHHHHHHHHHHHHCCCcHHHHHHHHHHHHHhcCchhHHHHHhhhccCCCCchHHHHHHHHHHHHHhhhhHHHH
Confidence 56788888888888888888888888888888888888888888877777766777777788888888888888888888
Q ss_pred HHHHHHhhCCCChHHHHHHHHHHHhhhcccccccccchhhhhHHHhcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHH-
Q 012143 222 CFQDLILKDQNHPAALINYAALLLCKYGSVLAGAGANTGEGACLDQASAVNVAKECLLAALKADPKAAHIWANLANAYY- 300 (470)
Q Consensus 222 ~~~~~l~~~p~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~la~~~~- 300 (470)
+|++++..+|+ ......+-.++. +.+.|.+-.+.--+..+..|.++........+..
T Consensus 99 ~Ye~~~~~~P~-eell~~lFmayv---------------------R~~~yk~qQkaa~~LyK~~pk~~yyfWsV~Slilq 156 (932)
T KOG2053|consen 99 LYERANQKYPS-EELLYHLFMAYV---------------------REKSYKKQQKAALQLYKNFPKRAYYFWSVISLILQ 156 (932)
T ss_pred HHHHHHhhCCc-HHHHHHHHHHHH---------------------HHHHHHHHHHHHHHHHHhCCcccchHHHHHHHHHH
Confidence 88888888887 555555544444 4555655555555555567776555444433322
Q ss_pred HcCChhHHHHHHHHHHhcCCCcccHHHHHHHHHHHHhhhccCchHHhhhhHHHHHHHhhcCCCCCCCcHHHHHHHHHHHh
Q 012143 301 LTGDHRSSGKCLEKAAKLEPNCMSTRYAVAVSRIKDAERSQEPTEQLSWAGNEMASILREGDPVQIEPPIAWAGFAAVQK 380 (470)
Q Consensus 301 ~~g~~~~A~~~~~~a~~~~p~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~ 380 (470)
.....+.... .....++... ....+.... ......-....-.+..
T Consensus 157 s~~~~~~~~~-------------~i~l~LA~~m--------------------~~~~l~~~g--k~~s~aE~~Lyl~iL~ 201 (932)
T KOG2053|consen 157 SIFSENELLD-------------PILLALAEKM--------------------VQKLLEKKG--KIESEAEIILYLLILE 201 (932)
T ss_pred hccCCccccc-------------chhHHHHHHH--------------------HHHHhccCC--ccchHHHHHHHHHHHH
Confidence 2222222211 1111111111 111222210 1111111222334566
Q ss_pred ccccHHHHHHHHHHHhc----chhhhhHhhHHHHHHHhccHHHHHHHHHHHHhcCCCc
Q 012143 381 THHEVAAAFETEENELS----KMEECAGAGESAFLDQASAVNVAKECLLAALKADPKA 434 (470)
Q Consensus 381 ~~~~~~~A~~~~~~~~~----~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~p~~ 434 (470)
.++++++|.+.+...+. +.+..........+...+++.+-.+...+.+...+++
T Consensus 202 ~~~k~~eal~~l~~~la~~l~~~~~~l~~~~~dllk~l~~w~~l~~l~~~Ll~k~~Dd 259 (932)
T KOG2053|consen 202 LQGKYQEALEFLAITLAEKLTSANLYLENKKLDLLKLLNRWQELFELSSRLLEKGNDD 259 (932)
T ss_pred hcccHHHHHHHHHHHHHHhccccchHHHHHHHHHHHHhcChHHHHHHHHHHHHhCCcc
Confidence 78889999998855332 2222233345567788899999999999999999987
|
|
| >KOG3081 consensus Vesicle coat complex COPI, epsilon subunit [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=98.83 E-value=8.3e-07 Score=72.36 Aligned_cols=169 Identities=17% Similarity=0.145 Sum_probs=128.8
Q ss_pred hhhhcccchhhhhcChhhHHHHHHHHHHhCCCChhHHHHHHHHHHHhCChhHHHHHHHHHHHHHhhhhcccchhhhHHHH
Q 012143 42 DQSGLGTSSSSREEKVSSLKTGLVHVARKMPKNAHAHFLLGLMYQRLGQPLKAVSSYEKAEEILLRCEADIARPELLSLV 121 (470)
Q Consensus 42 ~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~ 121 (470)
.+..++...+...|++++|.+.... -.+.++...--.++.+..+++-|...++++.+++.+ .....++
T Consensus 109 i~~l~aa~i~~~~~~~deAl~~~~~-----~~~lE~~Al~VqI~lk~~r~d~A~~~lk~mq~ided-------~tLtQLA 176 (299)
T KOG3081|consen 109 IDLLLAAIIYMHDGDFDEALKALHL-----GENLEAAALNVQILLKMHRFDLAEKELKKMQQIDED-------ATLTQLA 176 (299)
T ss_pred HHHHHhhHHhhcCCChHHHHHHHhc-----cchHHHHHHHHHHHHHHHHHHHHHHHHHHHHccchH-------HHHHHHH
Confidence 4554444438888889988888775 345667777778888888888888888888877422 3334456
Q ss_pred HHhhhccccccccCCCccccccCcccHHHHHHHHHHhhhcCccchHHHHHHHHHHHHcCChHHHHHHHHHHhhcCCCChH
Q 012143 122 QIHHAQCLLPESSGDNSLDKELEPEELEEILSKLKESMQSDTRQAVVWNTLGLILLKSGRLQSSISVLSSLLAVDPNNCD 201 (470)
Q Consensus 122 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~ 201 (470)
.+|..++. ..+.+.+|.-+|+..-...|..+..+...+.+++.+|+|++|...++.++..++++++
T Consensus 177 ~awv~la~--------------ggek~qdAfyifeE~s~k~~~T~~llnG~Av~~l~~~~~eeAe~lL~eaL~kd~~dpe 242 (299)
T KOG3081|consen 177 QAWVKLAT--------------GGEKIQDAFYIFEELSEKTPPTPLLLNGQAVCHLQLGRYEEAESLLEEALDKDAKDPE 242 (299)
T ss_pred HHHHHHhc--------------cchhhhhHHHHHHHHhcccCCChHHHccHHHHHHHhcCHHHHHHHHHHHHhccCCCHH
Confidence 66655543 3345788999999998888888888999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHcCCHHHHHH-HHHHHHhhCCCChHH
Q 012143 202 CIGNLGIAYFQSGDMEQSAK-CFQDLILKDQNHPAA 236 (470)
Q Consensus 202 ~~~~la~~~~~~g~~~~A~~-~~~~~l~~~p~~~~~ 236 (470)
++.++..+-...|...++.+ .+.+....+|.++..
T Consensus 243 tL~Nliv~a~~~Gkd~~~~~r~l~QLk~~~p~h~~v 278 (299)
T KOG3081|consen 243 TLANLIVLALHLGKDAEVTERNLSQLKLSHPEHPFV 278 (299)
T ss_pred HHHHHHHHHHHhCCChHHHHHHHHHHHhcCCcchHH
Confidence 99999999988988877664 445555667776643
|
|
| >COG3898 Uncharacterized membrane-bound protein [Function unknown] | Back alignment and domain information |
|---|
Probab=98.81 E-value=6.6e-05 Score=64.97 Aligned_cols=294 Identities=19% Similarity=0.130 Sum_probs=187.8
Q ss_pred HHHHHHHhCChhHHHHHHHHHHHHHhhhhcccchhhhHHHHHHhhhccccccccCCCccccccCcccHHHHHHHHHHhhh
Q 012143 81 LGLMYQRLGQPLKAVSSYEKAEEILLRCEADIARPELLSLVQIHHAQCLLPESSGDNSLDKELEPEELEEILSKLKESMQ 160 (470)
Q Consensus 81 l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~ 160 (470)
-|.+-.-.|+-..|...-.++-++...+ .+..+ ......+ .+-.|+++.|.+-|+.++.
T Consensus 90 tGliAagAGda~lARkmt~~~~~llssD-----qepLI---hlLeAQa-------------al~eG~~~~Ar~kfeAMl~ 148 (531)
T COG3898 90 TGLIAAGAGDASLARKMTARASKLLSSD-----QEPLI---HLLEAQA-------------ALLEGDYEDARKKFEAMLD 148 (531)
T ss_pred hhhhhhccCchHHHHHHHHHHHhhhhcc-----chHHH---HHHHHHH-------------HHhcCchHHHHHHHHHHhc
Confidence 3555556677788888777776543222 11122 2222222 2356889999999998885
Q ss_pred cCccc-hHHHHHHHHHHHHcCChHHHHHHHHHHhhcCCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCh-HHHH
Q 012143 161 SDTRQ-AVVWNTLGLILLKSGRLQSSISVLSSLLAVDPNNCDCIGNLGIAYFQSGDMEQSAKCFQDLILKDQNHP-AALI 238 (470)
Q Consensus 161 ~~p~~-~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~-~~~~ 238 (470)
+|.. .-.+..|-.--.+.|..+.|+.+-+.+-...|.-+.++...-...+..|+|+.|++..+......--.. .+-.
T Consensus 149 -dPEtRllGLRgLyleAqr~GareaAr~yAe~Aa~~Ap~l~WA~~AtLe~r~~~gdWd~AlkLvd~~~~~~vie~~~aeR 227 (531)
T COG3898 149 -DPETRLLGLRGLYLEAQRLGAREAARHYAERAAEKAPQLPWAARATLEARCAAGDWDGALKLVDAQRAAKVIEKDVAER 227 (531)
T ss_pred -ChHHHHHhHHHHHHHHHhcccHHHHHHHHHHHHhhccCCchHHHHHHHHHHhcCChHHHHHHHHHHHHHHhhchhhHHH
Confidence 3332 222233333345789999999999999999999999999888889999999999999987664321111 1112
Q ss_pred HHHHHHHhhhcccccccccchhhhhHHHhcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCChhHHHHHHHHHHhc
Q 012143 239 NYAALLLCKYGSVLAGAGANTGEGACLDQASAVNVAKECLLAALKADPKAAHIWANLANAYYLTGDHRSSGKCLEKAAKL 318 (470)
Q Consensus 239 ~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~ 318 (470)
..+.++..+ +. -.-..+...|...-.++.++.|+....-..-+..+++.|+..++-..++.+.+.
T Consensus 228 ~rAvLLtAk--------------A~-s~ldadp~~Ar~~A~~a~KL~pdlvPaav~AAralf~d~~~rKg~~ilE~aWK~ 292 (531)
T COG3898 228 SRAVLLTAK--------------AM-SLLDADPASARDDALEANKLAPDLVPAAVVAARALFRDGNLRKGSKILETAWKA 292 (531)
T ss_pred HHHHHHHHH--------------HH-HHhcCChHHHHHHHHHHhhcCCccchHHHHHHHHHHhccchhhhhhHHHHHHhc
Confidence 222222211 00 012456889999999999999999999999999999999999999999999999
Q ss_pred CCCcccHHHHHHHHHHHHhhhccCchHHhhhhHHHHHHHhhcCCCCCCCcHHHHHHHHHHHhccccHHHHHHHHH-----
Q 012143 319 EPNCMSTRYAVAVSRIKDAERSQEPTEQLSWAGNEMASILREGDPVQIEPPIAWAGFAAVQKTHHEVAAAFETEE----- 393 (470)
Q Consensus 319 ~p~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~----- 393 (470)
.|.-..+... ++.+.|+.. +..++
T Consensus 293 ePHP~ia~lY-------------------------------------------------~~ar~gdta--~dRlkRa~~L 321 (531)
T COG3898 293 EPHPDIALLY-------------------------------------------------VRARSGDTA--LDRLKRAKKL 321 (531)
T ss_pred CCChHHHHHH-------------------------------------------------HHhcCCCcH--HHHHHHHHHH
Confidence 8873221110 011111111 11111
Q ss_pred HHhcchhhhhHhhHHHHHHHhccHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHc-CChHHHHHHHHHHHH
Q 012143 394 NELSKMEECAGAGESAFLDQASAVNVAKECLLAALKADPKAAHIWANLANAYYLT-GDHRSSGKCLEKVLM 463 (470)
Q Consensus 394 ~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~-g~~~~A~~~~~~al~ 463 (470)
..+.+++.+..+..+..-...|++..|..--+.+....|. ..++..|+.+-... ||..++..++-+++.
T Consensus 322 ~slk~nnaes~~~va~aAlda~e~~~ARa~Aeaa~r~~pr-es~~lLlAdIeeAetGDqg~vR~wlAqav~ 391 (531)
T COG3898 322 ESLKPNNAESSLAVAEAALDAGEFSAARAKAEAAAREAPR-ESAYLLLADIEEAETGDQGKVRQWLAQAVK 391 (531)
T ss_pred HhcCccchHHHHHHHHHHHhccchHHHHHHHHHHhhhCch-hhHHHHHHHHHhhccCchHHHHHHHHHHhc
Confidence 1344555555555556666666677777666666666664 34556666666444 777777777766654
|
|
| >PF13371 TPR_9: Tetratricopeptide repeat | Back alignment and domain information |
|---|
Probab=98.79 E-value=3.8e-08 Score=66.45 Aligned_cols=67 Identities=25% Similarity=0.303 Sum_probs=61.4
Q ss_pred hhHHHhcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCChhHHHHHHHHHHhcCCCcccHHHH
Q 012143 262 GACLDQASAVNVAKECLLAALKADPKAAHIWANLANAYYLTGDHRSSGKCLEKAAKLEPNCMSTRYA 328 (470)
Q Consensus 262 ~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~p~~~~~~~~ 328 (470)
..++.+.+++++|++++++++..+|+++..+..+|.++..+|++++|+..++++++..|+++.....
T Consensus 2 ~~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~~a~~~~~~g~~~~A~~~l~~~l~~~p~~~~~~~~ 68 (73)
T PF13371_consen 2 KQIYLQQEDYEEALEVLERALELDPDDPELWLQRARCLFQLGRYEEALEDLERALELSPDDPDARAL 68 (73)
T ss_pred HHHHHhCCCHHHHHHHHHHHHHhCcccchhhHHHHHHHHHhccHHHHHHHHHHHHHHCCCcHHHHHH
Confidence 3456689999999999999999999999999999999999999999999999999999988765543
|
|
| >KOG4234 consensus TPR repeat-containing protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.78 E-value=2.9e-08 Score=76.81 Aligned_cols=101 Identities=20% Similarity=0.096 Sum_probs=92.0
Q ss_pred hhhhhhhhhhhhhhhhHHHHHHHHHHHHhcCCCCcc-----hhhhcccchhhhhcChhhHHHHHHHHHHhCCCChhHHHH
Q 012143 6 DVAEVEGKKINKLGKCRSRISSKMDSALEFGVDADG-----DQSGLGTSSSSREEKVSSLKTGLVHVARKMPKNAHAHFL 80 (470)
Q Consensus 6 ~~~~~~~~~~~~~g~~~~a~~~~~~~~l~~~p~~~~-----~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~ 80 (470)
+....||+.+++.|.+.+|. ..|..+|+..|.... .|.+.|.+ ..+.+.++.|+....++++++|.+..++..
T Consensus 96 d~lK~EGN~~F~ngdyeeA~-skY~~Ale~cp~~~~e~rsIly~Nraaa-~iKl~k~e~aI~dcsKaiel~pty~kAl~R 173 (271)
T KOG4234|consen 96 DSLKKEGNELFKNGDYEEAN-SKYQEALESCPSTSTEERSILYSNRAAA-LIKLRKWESAIEDCSKAIELNPTYEKALER 173 (271)
T ss_pred HHHHHHHHHhhhcccHHHHH-HHHHHHHHhCccccHHHHHHHHhhhHHH-HHHhhhHHHHHHHHHhhHhcCchhHHHHHH
Confidence 44556899999999999999 999999999987544 56678888 999999999999999999999999999999
Q ss_pred HHHHHHHhCChhHHHHHHHHHHHHHhhh
Q 012143 81 LGLMYQRLGQPLKAVSSYEKAEEILLRC 108 (470)
Q Consensus 81 l~~~~~~~g~~~~A~~~~~~al~~~~~~ 108 (470)
+|.+|.+..++++|+..|+++++.+|..
T Consensus 174 RAeayek~ek~eealeDyKki~E~dPs~ 201 (271)
T KOG4234|consen 174 RAEAYEKMEKYEEALEDYKKILESDPSR 201 (271)
T ss_pred HHHHHHhhhhHHHHHHHHHHHHHhCcch
Confidence 9999999999999999999999998764
|
|
| >COG4700 Uncharacterized protein conserved in bacteria containing a divergent form of TPR repeats [Function unknown] | Back alignment and domain information |
|---|
Probab=98.78 E-value=2e-06 Score=66.13 Aligned_cols=147 Identities=15% Similarity=0.156 Sum_probs=119.1
Q ss_pred HHHHHHHHHHhhhcCccchHHHHHHHHHHHHcCChHHHHHHHHHHhh-cCCCChHHHHHHHHHHHHcCCHHHHHHHHHHH
Q 012143 148 LEEILSKLKESMQSDTRQAVVWNTLGLILLKSGRLQSSISVLSSLLA-VDPNNCDCIGNLGIAYFQSGDMEQSAKCFQDL 226 (470)
Q Consensus 148 ~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~-~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~ 226 (470)
.+.......+.+..-|.. .-.+.+|......|++.+|...|++++. +.-+++..+..+++..+..+++..|...+++.
T Consensus 72 P~R~~Rea~~~~~~ApTv-qnr~rLa~al~elGr~~EA~~hy~qalsG~fA~d~a~lLglA~Aqfa~~~~A~a~~tLe~l 150 (251)
T COG4700 72 PERHLREATEELAIAPTV-QNRYRLANALAELGRYHEAVPHYQQALSGIFAHDAAMLLGLAQAQFAIQEFAAAQQTLEDL 150 (251)
T ss_pred hhHHHHHHHHHHhhchhH-HHHHHHHHHHHHhhhhhhhHHHHHHHhccccCCCHHHHHHHHHHHHhhccHHHHHHHHHHH
Confidence 344555555556666653 4567899999999999999999999986 45678889999999999999999999999999
Q ss_pred HhhCCC--ChHHHHHHHHHHHhhhcccccccccchhhhhHHHhcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCC
Q 012143 227 ILKDQN--HPAALINYAALLLCKYGSVLAGAGANTGEGACLDQASAVNVAKECLLAALKADPKAAHIWANLANAYYLTGD 304 (470)
Q Consensus 227 l~~~p~--~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~la~~~~~~g~ 304 (470)
.+.+|. .++....++.++. ..|++.+|...|+.++...|+ +......+..+..+|+
T Consensus 151 ~e~~pa~r~pd~~Ll~aR~la---------------------a~g~~a~Aesafe~a~~~ypg-~~ar~~Y~e~La~qgr 208 (251)
T COG4700 151 MEYNPAFRSPDGHLLFARTLA---------------------AQGKYADAESAFEVAISYYPG-PQARIYYAEMLAKQGR 208 (251)
T ss_pred hhcCCccCCCCchHHHHHHHH---------------------hcCCchhHHHHHHHHHHhCCC-HHHHHHHHHHHHHhcc
Confidence 998875 3455556666665 799999999999999999997 7788888999999999
Q ss_pred hhHHHHHHHHHHh
Q 012143 305 HRSSGKCLEKAAK 317 (470)
Q Consensus 305 ~~~A~~~~~~a~~ 317 (470)
.++|..-+..+.+
T Consensus 209 ~~ea~aq~~~v~d 221 (251)
T COG4700 209 LREANAQYVAVVD 221 (251)
T ss_pred hhHHHHHHHHHHH
Confidence 8888776655543
|
|
| >COG4105 ComL DNA uptake lipoprotein [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.77 E-value=6.7e-06 Score=67.49 Aligned_cols=177 Identities=16% Similarity=0.121 Sum_probs=119.8
Q ss_pred hHHHhcCCHHHHHHHHHHHHhcCCC---CHHHHHHHHHHHHHcCChhHHHHHHHHHHhcCCCcccHHH---HHHHHHHHH
Q 012143 263 ACLDQASAVNVAKECLLAALKADPK---AAHIWANLANAYYLTGDHRSSGKCLEKAAKLEPNCMSTRY---AVAVSRIKD 336 (470)
Q Consensus 263 ~~~~~~~~~~~A~~~~~~~~~~~p~---~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~p~~~~~~~---~l~~~~~~~ 336 (470)
....+.|++++|+..|+.+....|. ...+...++.++++.+++++|+...++.+.+.|.++++-+ ..++..+..
T Consensus 42 ~~~L~~gn~~~A~~~fe~l~~~~p~s~~~~qa~l~l~yA~Yk~~~y~~A~~~~drFi~lyP~~~n~dY~~YlkgLs~~~~ 121 (254)
T COG4105 42 LTELQKGNYEEAIKYFEALDSRHPFSPYSEQAQLDLAYAYYKNGEYDLALAYIDRFIRLYPTHPNADYAYYLKGLSYFFQ 121 (254)
T ss_pred HHHHhcCCHHHHHHHHHHHHHcCCCCcccHHHHHHHHHHHHhcccHHHHHHHHHHHHHhCCCCCChhHHHHHHHHHHhcc
Confidence 3334799999999999999999887 4568889999999999999999999999999999987654 344443333
Q ss_pred hhhccCchHHhhhhHHHHHHHhhcCCCCCCCcHHHHHHHHHHHhccccHHHHHHHHHHHhcchhhhhHhhHHHHHHHhcc
Q 012143 337 AERSQEPTEQLSWAGNEMASILREGDPVQIEPPIAWAGFAAVQKTHHEVAAAFETEENELSKMEECAGAGESAFLDQASA 416 (470)
Q Consensus 337 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~l~~~~~~~~~ 416 (470)
.............++..+...+..-.... -.+.+-..+..+ ...-..--..+|..|.+.|.
T Consensus 122 i~~~~rDq~~~~~A~~~f~~~i~ryPnS~-Ya~dA~~~i~~~------------------~d~LA~~Em~IaryY~kr~~ 182 (254)
T COG4105 122 IDDVTRDQSAARAAFAAFKELVQRYPNSR-YAPDAKARIVKL------------------NDALAGHEMAIARYYLKRGA 182 (254)
T ss_pred CCccccCHHHHHHHHHHHHHHHHHCCCCc-chhhHHHHHHHH------------------HHHHHHHHHHHHHHHHHhcC
Confidence 33333333333444444444444432211 001111110000 00011112356778999999
Q ss_pred HHHHHHHHHHHHhcCCCc---HHHHHHHHHHHHHcCChHHHHHHH
Q 012143 417 VNVAKECLLAALKADPKA---AHIWANLANAYYLTGDHRSSGKCL 458 (470)
Q Consensus 417 ~~~A~~~~~~al~~~p~~---~~~~~~la~~~~~~g~~~~A~~~~ 458 (470)
+-.|+.-++.+++..|+. .+++..+..+|..+|-.++|.+.-
T Consensus 183 ~~AA~nR~~~v~e~y~~t~~~~eaL~~l~eaY~~lgl~~~a~~~~ 227 (254)
T COG4105 183 YVAAINRFEEVLENYPDTSAVREALARLEEAYYALGLTDEAKKTA 227 (254)
T ss_pred hHHHHHHHHHHHhccccccchHHHHHHHHHHHHHhCChHHHHHHH
Confidence 999999999999987765 578888999999999999987763
|
|
| >PF13512 TPR_18: Tetratricopeptide repeat | Back alignment and domain information |
|---|
Probab=98.73 E-value=4.5e-07 Score=67.53 Aligned_cols=93 Identities=16% Similarity=0.246 Sum_probs=69.4
Q ss_pred CcccHHHHHHHHHHhhhcCcc---chHHHHHHHHHHHHcCChHHHHHHHHHHhhcCCCCh---HHHHHHHHHHHHcCC--
Q 012143 144 EPEELEEILSKLKESMQSDTR---QAVVWNTLGLILLKSGRLQSSISVLSSLLAVDPNNC---DCIGNLGIAYFQSGD-- 215 (470)
Q Consensus 144 ~~~~~~~A~~~~~~~~~~~p~---~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~---~~~~~la~~~~~~g~-- 215 (470)
+.|+|.+|++.|+.+....|. ...+.+.+|.+|+..+++++|+..+++.++++|.++ .+++..|.+++.+..
T Consensus 22 ~~~~Y~~A~~~le~L~~ryP~g~ya~qAqL~l~yayy~~~~y~~A~a~~~rFirLhP~hp~vdYa~Y~~gL~~~~~~~~~ 101 (142)
T PF13512_consen 22 QKGNYEEAIKQLEALDTRYPFGEYAEQAQLDLAYAYYKQGDYEEAIAAYDRFIRLHPTHPNVDYAYYMRGLSYYEQDEGS 101 (142)
T ss_pred HhCCHHHHHHHHHHHHhcCCCCcccHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCCCccHHHHHHHHHHHHHhhhH
Confidence 344444444444444444443 356778888889999999999999999998888764 478888888888766
Q ss_pred -------------HHHHHHHHHHHHhhCCCChHH
Q 012143 216 -------------MEQSAKCFQDLILKDQNHPAA 236 (470)
Q Consensus 216 -------------~~~A~~~~~~~l~~~p~~~~~ 236 (470)
..+|...|++++...|++..+
T Consensus 102 ~~~~~~~drD~~~~~~A~~~f~~lv~~yP~S~ya 135 (142)
T PF13512_consen 102 LQSFFRSDRDPTPARQAFRDFEQLVRRYPNSEYA 135 (142)
T ss_pred HhhhcccccCcHHHHHHHHHHHHHHHHCcCChhH
Confidence 889999999999999988754
|
|
| >PF13424 TPR_12: Tetratricopeptide repeat; PDB: 3RO2_A 3Q15_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 4A1S_B 3CEQ_B 3EDT_H | Back alignment and domain information |
|---|
Probab=98.72 E-value=3.1e-08 Score=67.81 Aligned_cols=66 Identities=21% Similarity=0.254 Sum_probs=55.1
Q ss_pred hhhHhhHHHHHHHhccHHHHHHHHHHHHhc----C---CCcHHHHHHHHHHHHHcCChHHHHHHHHHHHHhhc
Q 012143 401 ECAGAGESAFLDQASAVNVAKECLLAALKA----D---PKAAHIWANLANAYYLTGDHRSSGKCLEKVLMVYC 466 (470)
Q Consensus 401 ~~~~~~l~~~~~~~~~~~~A~~~~~~al~~----~---p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~ 466 (470)
..++..+|.+|...|++++|+.+|++++++ . |....++.++|.++..+|++++|+++|+++++++.
T Consensus 5 a~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~al~i~~ 77 (78)
T PF13424_consen 5 ANAYNNLARVYRELGRYDEALDYYEKALDIEEQLGDDHPDTANTLNNLGECYYRLGDYEEALEYYQKALDIFE 77 (78)
T ss_dssp HHHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHTTTHHHHHHHHHHHHHHHHHHTTHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhhc
Confidence 356778888999999999999999999865 1 22366889999999999999999999999999874
|
... |
| >PF13512 TPR_18: Tetratricopeptide repeat | Back alignment and domain information |
|---|
Probab=98.71 E-value=5.1e-07 Score=67.25 Aligned_cols=103 Identities=14% Similarity=0.061 Sum_probs=91.1
Q ss_pred CcHHHHHHHHHHHhccccHHHHHHHHHHHhc-----chhhhhHhhHHHHHHHhccHHHHHHHHHHHHhcCCCc---HHHH
Q 012143 367 EPPIAWAGFAAVQKTHHEVAAAFETEENELS-----KMEECAGAGESAFLDQASAVNVAKECLLAALKADPKA---AHIW 438 (470)
Q Consensus 367 ~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~-----~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~p~~---~~~~ 438 (470)
..+..++.-|......|+|.+|++.++.... +....+.+.+|.+|...+++++|+..+++-++++|.+ +.++
T Consensus 8 ~~~~~ly~~a~~~l~~~~Y~~A~~~le~L~~ryP~g~ya~qAqL~l~yayy~~~~y~~A~a~~~rFirLhP~hp~vdYa~ 87 (142)
T PF13512_consen 8 KSPQELYQEAQEALQKGNYEEAIKQLEALDTRYPFGEYAEQAQLDLAYAYYKQGDYEEAIAAYDRFIRLHPTHPNVDYAY 87 (142)
T ss_pred CCHHHHHHHHHHHHHhCCHHHHHHHHHHHHhcCCCCcccHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCCCccHHH
Confidence 4567889999999999999999999998655 3334778899999999999999999999999999988 4689
Q ss_pred HHHHHHHHHcCC---------------hHHHHHHHHHHHHhhccCC
Q 012143 439 ANLANAYYLTGD---------------HRSSGKCLEKVLMVYCSSN 469 (470)
Q Consensus 439 ~~la~~~~~~g~---------------~~~A~~~~~~al~~~~~~~ 469 (470)
+..|.++..+.. ..+|...|++.+..+|+|.
T Consensus 88 Y~~gL~~~~~~~~~~~~~~~~drD~~~~~~A~~~f~~lv~~yP~S~ 133 (142)
T PF13512_consen 88 YMRGLSYYEQDEGSLQSFFRSDRDPTPARQAFRDFEQLVRRYPNSE 133 (142)
T ss_pred HHHHHHHHHHhhhHHhhhcccccCcHHHHHHHHHHHHHHHHCcCCh
Confidence 999999999887 8999999999999999874
|
|
| >COG1729 Uncharacterized protein conserved in bacteria [Function unknown] | Back alignment and domain information |
|---|
Probab=98.71 E-value=7.5e-07 Score=73.69 Aligned_cols=105 Identities=21% Similarity=0.246 Sum_probs=93.5
Q ss_pred HHHHHHHHHHcCChHHHHHHHHHHhhcCCCC---hHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCC---hHHHHHHHH
Q 012143 169 WNTLGLILLKSGRLQSSISVLSSLLAVDPNN---CDCIGNLGIAYFQSGDMEQSAKCFQDLILKDQNH---PAALINYAA 242 (470)
Q Consensus 169 ~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~---~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~---~~~~~~l~~ 242 (470)
.+..|.-++..|+|..|...|...++..|++ +.+++.||.+++.+|+++.|...|..+.+-.|++ +++++.+|.
T Consensus 144 ~Y~~A~~~~ksgdy~~A~~~F~~fi~~YP~s~~~~nA~yWLGe~~y~qg~y~~Aa~~f~~~~k~~P~s~KApdallKlg~ 223 (262)
T COG1729 144 LYNAALDLYKSGDYAEAEQAFQAFIKKYPNSTYTPNAYYWLGESLYAQGDYEDAAYIFARVVKDYPKSPKAPDALLKLGV 223 (262)
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCcccchhHHHHHHHHHhcccchHHHHHHHHHHHhCCCCCCChHHHHHHHH
Confidence 7889999999999999999999999999876 6799999999999999999999999999988766 456777776
Q ss_pred HHHhhhcccccccccchhhhhHHHhcCCHHHHHHHHHHHHhcCCCCHHHHHH
Q 012143 243 LLLCKYGSVLAGAGANTGEGACLDQASAVNVAKECLLAALKADPKAAHIWAN 294 (470)
Q Consensus 243 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~ 294 (470)
+.. ..|+.++|...|+++++..|+...+...
T Consensus 224 ~~~---------------------~l~~~d~A~atl~qv~k~YP~t~aA~~A 254 (262)
T COG1729 224 SLG---------------------RLGNTDEACATLQQVIKRYPGTDAAKLA 254 (262)
T ss_pred HHH---------------------HhcCHHHHHHHHHHHHHHCCCCHHHHHH
Confidence 666 7999999999999999999997766543
|
|
| >PLN03098 LPA1 LOW PSII ACCUMULATION1; Provisional | Back alignment and domain information |
|---|
Probab=98.71 E-value=8.1e-08 Score=85.32 Aligned_cols=70 Identities=20% Similarity=0.321 Sum_probs=66.6
Q ss_pred cCccchHHHHHHHHHHHHcCChHHHHHHHHHHhhcCCCChHH---HHHHHHHHHHcCCHHHHHHHHHHHHhhC
Q 012143 161 SDTRQAVVWNTLGLILLKSGRLQSSISVLSSLLAVDPNNCDC---IGNLGIAYFQSGDMEQSAKCFQDLILKD 230 (470)
Q Consensus 161 ~~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~---~~~la~~~~~~g~~~~A~~~~~~~l~~~ 230 (470)
.+|+++.+++++|.+|...|+|++|+.+|+++++++|++..+ |+++|.+|..+|++++|+.++++++++.
T Consensus 70 ~dP~~a~a~~NLG~AL~~lGryeEAIa~f~rALeL~Pd~aeA~~A~yNLAcaya~LGr~dEAla~LrrALels 142 (453)
T PLN03098 70 ADVKTAEDAVNLGLSLFSKGRVKDALAQFETALELNPNPDEAQAAYYNKACCHAYREEGKKAADCLRTALRDY 142 (453)
T ss_pred CCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhc
Confidence 578999999999999999999999999999999999999855 9999999999999999999999999973
|
|
| >COG3898 Uncharacterized membrane-bound protein [Function unknown] | Back alignment and domain information |
|---|
Probab=98.70 E-value=3.1e-05 Score=66.93 Aligned_cols=258 Identities=14% Similarity=0.082 Sum_probs=185.4
Q ss_pred hhhhhhhHHHHHHHHHHHHhcCCCCcchhhhcccch-hhhhcChhhHHHHHHHHHHhCCCChhHHHHHHHHHHHhCChhH
Q 012143 15 INKLGKCRSRISSKMDSALEFGVDADGDQSGLGTSS-SSREEKVSSLKTGLVHVARKMPKNAHAHFLLGLMYQRLGQPLK 93 (470)
Q Consensus 15 ~~~~g~~~~a~~~~~~~~l~~~p~~~~~~~~~~~~~-~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~l~~~~~~~g~~~~ 93 (470)
-.-.|+++.+- ..|+..+. +|..- ..-..|..+ ....|+.+.|+.+-+.+-...|.-+.++...-...+..|+++.
T Consensus 130 al~eG~~~~Ar-~kfeAMl~-dPEtR-llGLRgLyleAqr~GareaAr~yAe~Aa~~Ap~l~WA~~AtLe~r~~~gdWd~ 206 (531)
T COG3898 130 ALLEGDYEDAR-KKFEAMLD-DPETR-LLGLRGLYLEAQRLGAREAARHYAERAAEKAPQLPWAARATLEARCAAGDWDG 206 (531)
T ss_pred HHhcCchHHHH-HHHHHHhc-ChHHH-HHhHHHHHHHHHhcccHHHHHHHHHHHHhhccCCchHHHHHHHHHHhcCChHH
Confidence 33457777776 66665543 34322 122233221 4568999999999999999999999999888888899999999
Q ss_pred HHHHHHHHHHHHhhhhcccchhhhHHHHHHhhhccccccccCCCccccccCcccHHHHHHHHHHhhhcCccchHHHHHHH
Q 012143 94 AVSSYEKAEEILLRCEADIARPELLSLVQIHHAQCLLPESSGDNSLDKELEPEELEEILSKLKESMQSDTRQAVVWNTLG 173 (470)
Q Consensus 94 A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~l~ 173 (470)
|+++.+.......-. ++.......-..-+.+. ..-..+...|.....+++++.|+...+-..-+
T Consensus 207 AlkLvd~~~~~~vie------~~~aeR~rAvLLtAkA~----------s~ldadp~~Ar~~A~~a~KL~pdlvPaav~AA 270 (531)
T COG3898 207 ALKLVDAQRAAKVIE------KDVAERSRAVLLTAKAM----------SLLDADPASARDDALEANKLAPDLVPAAVVAA 270 (531)
T ss_pred HHHHHHHHHHHHhhc------hhhHHHHHHHHHHHHHH----------HHhcCChHHHHHHHHHHhhcCCccchHHHHHH
Confidence 999999877643211 11111111111111111 11234568899999999999999999999999
Q ss_pred HHHHHcCChHHHHHHHHHHhhcCCCChHHHHHHHHHHHHcCCHHHHHHHHHH---HHhhCCCChHHHHHHHHHHHhhhcc
Q 012143 174 LILLKSGRLQSSISVLSSLLAVDPNNCDCIGNLGIAYFQSGDMEQSAKCFQD---LILKDQNHPAALINYAALLLCKYGS 250 (470)
Q Consensus 174 ~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~---~l~~~p~~~~~~~~l~~~~~~~~~~ 250 (470)
..+++.|+..++-..++.+.+..|. ++ ++.+|....--+.++.-+++ ...+.|++.+.....+..-+
T Consensus 271 ralf~d~~~rKg~~ilE~aWK~ePH-P~----ia~lY~~ar~gdta~dRlkRa~~L~slk~nnaes~~~va~aAl----- 340 (531)
T COG3898 271 RALFRDGNLRKGSKILETAWKAEPH-PD----IALLYVRARSGDTALDRLKRAKKLESLKPNNAESSLAVAEAAL----- 340 (531)
T ss_pred HHHHhccchhhhhhHHHHHHhcCCC-hH----HHHHHHHhcCCCcHHHHHHHHHHHHhcCccchHHHHHHHHHHH-----
Confidence 9999999999999999999999886 33 23344433333344444444 44668999998888877766
Q ss_pred cccccccchhhhhHHHhcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHc-CChhHHHHHHHHHHhc
Q 012143 251 VLAGAGANTGEGACLDQASAVNVAKECLLAALKADPKAAHIWANLANAYYLT-GDHRSSGKCLEKAAKL 318 (470)
Q Consensus 251 ~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~la~~~~~~-g~~~~A~~~~~~a~~~ 318 (470)
..|++..|..--+.+....|. ..++..++.+-... |+-.+...++-++++.
T Consensus 341 ----------------da~e~~~ARa~Aeaa~r~~pr-es~~lLlAdIeeAetGDqg~vR~wlAqav~A 392 (531)
T COG3898 341 ----------------DAGEFSAARAKAEAAAREAPR-ESAYLLLADIEEAETGDQGKVRQWLAQAVKA 392 (531)
T ss_pred ----------------hccchHHHHHHHHHHhhhCch-hhHHHHHHHHHhhccCchHHHHHHHHHHhcC
Confidence 589999999999999999997 67788888887766 9999999999999874
|
|
| >KOG2471 consensus TPR repeat-containing protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.69 E-value=2e-05 Score=70.05 Aligned_cols=148 Identities=16% Similarity=0.106 Sum_probs=107.0
Q ss_pred hhhhcChhhHHHHHHHHHHhCCCChhHHHHHHHHHHHhCChhHHHHHHHHHHHHHhhhhcccchhhhHHHHHHhhhcccc
Q 012143 51 SSREEKVSSLKTGLVHVARKMPKNAHAHFLLGLMYQRLGQPLKAVSSYEKAEEILLRCEADIARPELLSLVQIHHAQCLL 130 (470)
Q Consensus 51 ~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 130 (470)
+....+...+..-.+.+.....+.+.+++..+..++..|++.+|.+.+...--. ............ .|+.
T Consensus 216 llq~~~Lk~~krevK~vmn~a~~s~~~l~LKsq~eY~~gn~~kA~KlL~~sni~---~~~g~~~T~q~~-------~cif 285 (696)
T KOG2471|consen 216 LLQTRNLKLAKREVKHVMNIAQDSSMALLLKSQLEYAHGNHPKAMKLLLVSNIH---KEAGGTITPQLS-------SCIF 285 (696)
T ss_pred HHHHHHHHHHHHhhhhhhhhcCCCcHHHHHHHHHHHHhcchHHHHHHHHhcccc---cccCccccchhh-------hhee
Confidence 344555666666666666677788899999999999999999999887653211 000000111112 2333
Q ss_pred ccccCCCccccccCcccHHHHHHHHHHhhhc---------Cc---------cchHHHHHHHHHHHHcCChHHHHHHHHHH
Q 012143 131 PESSGDNSLDKELEPEELEEILSKLKESMQS---------DT---------RQAVVWNTLGLILLKSGRLQSSISVLSSL 192 (470)
Q Consensus 131 ~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~---------~p---------~~~~~~~~l~~~~~~~~~~~~A~~~~~~a 192 (470)
...+|-+ +++.|.+.-+..+|.++++. .| ...+++++.|..|...|++-.|.++|.++
T Consensus 286 ~NNlGcI----h~~~~~y~~~~~~F~kAL~N~c~qL~~g~~~~~~~tls~nks~eilYNcG~~~Lh~grPl~AfqCf~~a 361 (696)
T KOG2471|consen 286 NNNLGCI----HYQLGCYQASSVLFLKALRNSCSQLRNGLKPAKTFTLSQNKSMEILYNCGLLYLHSGRPLLAFQCFQKA 361 (696)
T ss_pred ecCcceE----eeehhhHHHHHHHHHHHHHHHHHHHhccCCCCcceehhcccchhhHHhhhHHHHhcCCcHHHHHHHHHH
Confidence 3444444 66777779999999998851 11 23568999999999999999999999999
Q ss_pred hhcCCCChHHHHHHHHHHHH
Q 012143 193 LAVDPNNCDCIGNLGIAYFQ 212 (470)
Q Consensus 193 ~~~~~~~~~~~~~la~~~~~ 212 (470)
....-.+|..|..++.+...
T Consensus 362 v~vfh~nPrlWLRlAEcCim 381 (696)
T KOG2471|consen 362 VHVFHRNPRLWLRLAECCIM 381 (696)
T ss_pred HHHHhcCcHHHHHHHHHHHH
Confidence 99999999999999998864
|
|
| >PF13424 TPR_12: Tetratricopeptide repeat; PDB: 3RO2_A 3Q15_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 4A1S_B 3CEQ_B 3EDT_H | Back alignment and domain information |
|---|
Probab=98.67 E-value=3.9e-08 Score=67.33 Aligned_cols=67 Identities=21% Similarity=0.425 Sum_probs=58.0
Q ss_pred ccchHHHHHHHHHHHHcCChHHHHHHHHHHhhc----CC---CChHHHHHHHHHHHHcCCHHHHHHHHHHHHhh
Q 012143 163 TRQAVVWNTLGLILLKSGRLQSSISVLSSLLAV----DP---NNCDCIGNLGIAYFQSGDMEQSAKCFQDLILK 229 (470)
Q Consensus 163 p~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~----~~---~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~ 229 (470)
|+-..++.++|.+|..+|++++|+.+|++++++ .+ ....++.++|.++..+|++++|++++++++++
T Consensus 2 ~~~a~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~al~i 75 (78)
T PF13424_consen 2 PDTANAYNNLARVYRELGRYDEALDYYEKALDIEEQLGDDHPDTANTLNNLGECYYRLGDYEEALEYYQKALDI 75 (78)
T ss_dssp HHHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHTTTHHHHHHHHHHHHHHHHHHTTHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh
Confidence 556788999999999999999999999999976 22 23568999999999999999999999999875
|
... |
| >PLN03098 LPA1 LOW PSII ACCUMULATION1; Provisional | Back alignment and domain information |
|---|
Probab=98.65 E-value=1.1e-07 Score=84.50 Aligned_cols=68 Identities=16% Similarity=0.121 Sum_probs=57.1
Q ss_pred cchhhhhHhhHHHHHHHhccHHHHHHHHHHHHhcCCCcHHH---HHHHHHHHHHcCChHHHHHHHHHHHHh
Q 012143 397 SKMEECAGAGESAFLDQASAVNVAKECLLAALKADPKAAHI---WANLANAYYLTGDHRSSGKCLEKVLMV 464 (470)
Q Consensus 397 ~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~p~~~~~---~~~la~~~~~~g~~~~A~~~~~~al~~ 464 (470)
+|.....++++|.+|...|+|++|+..|+++++++|+++.+ |+++|.+|..+|+.++|+.+|++|+++
T Consensus 71 dP~~a~a~~NLG~AL~~lGryeEAIa~f~rALeL~Pd~aeA~~A~yNLAcaya~LGr~dEAla~LrrALel 141 (453)
T PLN03098 71 DVKTAEDAVNLGLSLFSKGRVKDALAQFETALELNPNPDEAQAAYYNKACCHAYREEGKKAADCLRTALRD 141 (453)
T ss_pred CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence 35555677788888888888888899999999999988754 889999999999999999999998886
|
|
| >PF06552 TOM20_plant: Plant specific mitochondrial import receptor subunit TOM20; InterPro: IPR010547 This family consists of several plant specific mitochondrial import receptor subunit TOM20 (translocase of outer membrane 20 kDa subunit) proteins | Back alignment and domain information |
|---|
Probab=98.63 E-value=3.1e-07 Score=70.57 Aligned_cols=94 Identities=22% Similarity=0.273 Sum_probs=74.6
Q ss_pred HHHHHHHHHHhhhcCccchHHHHHHHHHHHHcC----------ChHHHHHHHHHHhhcCCCChHHHHHHHHHHHHcCC--
Q 012143 148 LEEILSKLKESMQSDTRQAVVWNTLGLILLKSG----------RLQSSISVLSSLLAVDPNNCDCIGNLGIAYFQSGD-- 215 (470)
Q Consensus 148 ~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~~----------~~~~A~~~~~~a~~~~~~~~~~~~~la~~~~~~g~-- 215 (470)
|+.|.+.++.....+|.+++.+++.|.++..+. .+++|+.-|++++.++|+..+++..+|.+|..++.
T Consensus 7 FE~ark~aea~y~~nP~DadnL~~WG~ALLELAqfk~g~es~~miedAisK~eeAL~I~P~~hdAlw~lGnA~ts~A~l~ 86 (186)
T PF06552_consen 7 FEHARKKAEAAYAKNPLDADNLTNWGGALLELAQFKQGPESKKMIEDAISKFEEALKINPNKHDALWCLGNAYTSLAFLT 86 (186)
T ss_dssp HHHHHHHHHHHHHH-TT-HHHHHHHHHHHHHHHHHS-HHHHHHHHHHHHHHHHHHHHH-TT-HHHHHHHHHHHHHHHHH-
T ss_pred HHHHHHHHHHHHHhCcHhHHHHHHHHHHHHHHHhccCcchHHHHHHHHHHHHHHHHhcCCchHHHHHHHHHHHHHHHhhc
Confidence 688999999999999999999999999887763 35678888899999999999999999999987653
Q ss_pred ---------HHHHHHHHHHHHhhCCCChHHHHHHH
Q 012143 216 ---------MEQSAKCFQDLILKDQNHPAALINYA 241 (470)
Q Consensus 216 ---------~~~A~~~~~~~l~~~p~~~~~~~~l~ 241 (470)
|++|..+|+++...+|++...+..|.
T Consensus 87 ~d~~~A~~~F~kA~~~FqkAv~~~P~ne~Y~ksLe 121 (186)
T PF06552_consen 87 PDTAEAEEYFEKATEYFQKAVDEDPNNELYRKSLE 121 (186)
T ss_dssp --HHHHHHHHHHHHHHHHHHHHH-TT-HHHHHHHH
T ss_pred CChHHHHHHHHHHHHHHHHHHhcCCCcHHHHHHHH
Confidence 78899999999999999876554443
|
Most mitochondrial proteins are encoded by the nuclear genome, and are synthesised in the cytosol. TOM20 is a general import receptor that binds to mitochondrial pre-sequences in the early step of protein import into the mitochondria [].; GO: 0045040 protein import into mitochondrial outer membrane, 0005742 mitochondrial outer membrane translocase complex; PDB: 1ZU2_A. |
| >PF06552 TOM20_plant: Plant specific mitochondrial import receptor subunit TOM20; InterPro: IPR010547 This family consists of several plant specific mitochondrial import receptor subunit TOM20 (translocase of outer membrane 20 kDa subunit) proteins | Back alignment and domain information |
|---|
Probab=98.58 E-value=9.3e-07 Score=68.01 Aligned_cols=104 Identities=17% Similarity=0.142 Sum_probs=76.2
Q ss_pred hhhHHHHHHHHHHhCCCChhHHHHHHHHHHHhCChhHHHHHHHHHHHHHhhhhcccchhhhHHHHHHhhhccccccccCC
Q 012143 57 VSSLKTGLVHVARKMPKNAHAHFLLGLMYQRLGQPLKAVSSYEKAEEILLRCEADIARPELLSLVQIHHAQCLLPESSGD 136 (470)
Q Consensus 57 ~~~A~~~~~~~l~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 136 (470)
|+.|.+.++.....+|.+++.++.-|.++..+.++...-+.. ++
T Consensus 7 FE~ark~aea~y~~nP~DadnL~~WG~ALLELAqfk~g~es~----~m-------------------------------- 50 (186)
T PF06552_consen 7 FEHARKKAEAAYAKNPLDADNLTNWGGALLELAQFKQGPESK----KM-------------------------------- 50 (186)
T ss_dssp HHHHHHHHHHHHHH-TT-HHHHHHHHHHHHHHHHHS-HHHHH----HH--------------------------------
T ss_pred HHHHHHHHHHHHHhCcHhHHHHHHHHHHHHHHHhccCcchHH----HH--------------------------------
Confidence 567888888888899999999999999998876653321111 11
Q ss_pred CccccccCcccHHHHHHHHHHhhhcCccchHHHHHHHHHHHHcCC-----------hHHHHHHHHHHhhcCCCChHHHHH
Q 012143 137 NSLDKELEPEELEEILSKLKESMQSDTRQAVVWNTLGLILLKSGR-----------LQSSISVLSSLLAVDPNNCDCIGN 205 (470)
Q Consensus 137 ~~~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~~~-----------~~~A~~~~~~a~~~~~~~~~~~~~ 205 (470)
+++|+.-|++++.++|+..+++..+|.+|..++. |++|..+|+++...+|++......
T Consensus 51 -----------iedAisK~eeAL~I~P~~hdAlw~lGnA~ts~A~l~~d~~~A~~~F~kA~~~FqkAv~~~P~ne~Y~ks 119 (186)
T PF06552_consen 51 -----------IEDAISKFEEALKINPNKHDALWCLGNAYTSLAFLTPDTAEAEEYFEKATEYFQKAVDEDPNNELYRKS 119 (186)
T ss_dssp -----------HHHHHHHHHHHHHH-TT-HHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHH-TT-HHHHHH
T ss_pred -----------HHHHHHHHHHHHhcCCchHHHHHHHHHHHHHHHhhcCChHHHHHHHHHHHHHHHHHHhcCCCcHHHHHH
Confidence 3778888999999999999999999999987754 788999999999999998765444
Q ss_pred HH
Q 012143 206 LG 207 (470)
Q Consensus 206 la 207 (470)
|.
T Consensus 120 Le 121 (186)
T PF06552_consen 120 LE 121 (186)
T ss_dssp HH
T ss_pred HH
Confidence 43
|
Most mitochondrial proteins are encoded by the nuclear genome, and are synthesised in the cytosol. TOM20 is a general import receptor that binds to mitochondrial pre-sequences in the early step of protein import into the mitochondria [].; GO: 0045040 protein import into mitochondrial outer membrane, 0005742 mitochondrial outer membrane translocase complex; PDB: 1ZU2_A. |
| >KOG1586 consensus Protein required for fusion of vesicles in vesicular transport, alpha-SNAP [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=98.56 E-value=3.2e-05 Score=62.00 Aligned_cols=149 Identities=11% Similarity=0.092 Sum_probs=106.5
Q ss_pred hHHHHHHHHHHHHcCChHHHHHHHHHHhhcCCCChH------HHHHHHHHHHHc-CCHHHHHHHHHHHHhhCCCChH-HH
Q 012143 166 AVVWNTLGLILLKSGRLQSSISVLSSLLAVDPNNCD------CIGNLGIAYFQS-GDMEQSAKCFQDLILKDQNHPA-AL 237 (470)
Q Consensus 166 ~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~------~~~~la~~~~~~-g~~~~A~~~~~~~l~~~p~~~~-~~ 237 (470)
...|...+.+| +.+++.+|+.++++++++..+... -+..+|.+|..- .++++|+.+|+++-+....... +.
T Consensus 74 at~YveA~~cy-kk~~~~eAv~cL~~aieIyt~~Grf~~aAk~~~~iaEiyEsdl~d~ekaI~~YE~Aae~yk~ees~ss 152 (288)
T KOG1586|consen 74 ATTYVEAANCY-KKVDPEEAVNCLEKAIEIYTDMGRFTMAAKHHIEIAEIYESDLQDFEKAIAHYEQAAEYYKGEESVSS 152 (288)
T ss_pred HHHHHHHHHHh-hccChHHHHHHHHHHHHHHHhhhHHHHHHhhhhhHHHHHhhhHHHHHHHHHHHHHHHHHHcchhhhhh
Confidence 34555555555 455999999999999998665433 455889998765 8999999999999876543322 11
Q ss_pred HHHHHHHHhhhcccccccccchhhhhHHHhcCCHHHHHHHHHHHHhcCCCCH-------HHHHHHHHHHHHcCChhHHHH
Q 012143 238 INYAALLLCKYGSVLAGAGANTGEGACLDQASAVNVAKECLLAALKADPKAA-------HIWANLANAYYLTGDHRSSGK 310 (470)
Q Consensus 238 ~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~p~~~-------~~~~~la~~~~~~g~~~~A~~ 310 (470)
-+...+- .+..-...++|.+|+..|++.....-++. ..++.-|.|++...+.-.+..
T Consensus 153 ANKC~lK----------------vA~yaa~leqY~~Ai~iyeqva~~s~~n~LLKys~KdyflkAgLChl~~~D~v~a~~ 216 (288)
T KOG1586|consen 153 ANKCLLK----------------VAQYAAQLEQYSKAIDIYEQVARSSLDNNLLKYSAKDYFLKAGLCHLCKADEVNAQR 216 (288)
T ss_pred HHHHHHH----------------HHHHHHHHHHHHHHHHHHHHHHHHhccchHHHhHHHHHHHHHHHHhHhcccHHHHHH
Confidence 1221111 23444578999999999999887655543 234556778888899999999
Q ss_pred HHHHHHhcCCCcccHHHHHHH
Q 012143 311 CLEKAAKLEPNCMSTRYAVAV 331 (470)
Q Consensus 311 ~~~~a~~~~p~~~~~~~~l~~ 331 (470)
.+++...++|.....+-..-+
T Consensus 217 ALeky~~~dP~F~dsREckfl 237 (288)
T KOG1586|consen 217 ALEKYQELDPAFTDSRECKFL 237 (288)
T ss_pred HHHHHHhcCCcccccHHHHHH
Confidence 999999999998877654433
|
|
| >COG4700 Uncharacterized protein conserved in bacteria containing a divergent form of TPR repeats [Function unknown] | Back alignment and domain information |
|---|
Probab=98.55 E-value=2.8e-05 Score=60.02 Aligned_cols=128 Identities=15% Similarity=0.126 Sum_probs=105.9
Q ss_pred HHHHHHcCChHHHHHHHHHHhhcCCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHh-hCCCChHHHHHHHHHHHhhhccc
Q 012143 173 GLILLKSGRLQSSISVLSSLLAVDPNNCDCIGNLGIAYFQSGDMEQSAKCFQDLIL-KDQNHPAALINYAALLLCKYGSV 251 (470)
Q Consensus 173 ~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~-~~p~~~~~~~~l~~~~~~~~~~~ 251 (470)
+....+.=+++....-..+.+...|.. .-.+.||......|++.+|...|++++. +...++..+..++...+
T Consensus 63 ~~a~~q~ldP~R~~Rea~~~~~~ApTv-qnr~rLa~al~elGr~~EA~~hy~qalsG~fA~d~a~lLglA~Aqf------ 135 (251)
T COG4700 63 LMALQQKLDPERHLREATEELAIAPTV-QNRYRLANALAELGRYHEAVPHYQQALSGIFAHDAAMLLGLAQAQF------ 135 (251)
T ss_pred HHHHHHhcChhHHHHHHHHHHhhchhH-HHHHHHHHHHHHhhhhhhhHHHHHHHhccccCCCHHHHHHHHHHHH------
Confidence 344445556666666677777777764 4568899999999999999999999985 45567777777777766
Q ss_pred ccccccchhhhhHHHhcCCHHHHHHHHHHHHhcCCC--CHHHHHHHHHHHHHcCChhHHHHHHHHHHhcCCCc
Q 012143 252 LAGAGANTGEGACLDQASAVNVAKECLLAALKADPK--AAHIWANLANAYYLTGDHRSSGKCLEKAAKLEPNC 322 (470)
Q Consensus 252 ~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~p~--~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~p~~ 322 (470)
..+++..|...+++..+.+|. .++....+|.++..+|++.+|...|+.++...|+.
T Consensus 136 ---------------a~~~~A~a~~tLe~l~e~~pa~r~pd~~Ll~aR~laa~g~~a~Aesafe~a~~~ypg~ 193 (251)
T COG4700 136 ---------------AIQEFAAAQQTLEDLMEYNPAFRSPDGHLLFARTLAAQGKYADAESAFEVAISYYPGP 193 (251)
T ss_pred ---------------hhccHHHHHHHHHHHhhcCCccCCCCchHHHHHHHHhcCCchhHHHHHHHHHHhCCCH
Confidence 699999999999999999886 68888999999999999999999999999998883
|
|
| >KOG1914 consensus mRNA cleavage and polyadenylation factor I complex, subunit RNA14 [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=98.52 E-value=0.00073 Score=61.32 Aligned_cols=394 Identities=10% Similarity=0.034 Sum_probs=218.8
Q ss_pred HHHHhcCCCCcchhhhcccchhhhhcChhhHHHHHHHHHHhCCCChhHHHHHHHHHHHhCChhHHHHHHHHHHHHHhhhh
Q 012143 30 DSALEFGVDADGDQSGLGTSSSSREEKVSSLKTGLVHVARKMPKNAHAHFLLGLMYQRLGQPLKAVSSYEKAEEILLRCE 109 (470)
Q Consensus 30 ~~~l~~~p~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~ 109 (470)
++-++.+|.+..+|+.+-.- +..+ .+++....+++.+...|..+.+|.......+...+|+.-..+|.+++...-+
T Consensus 10 ~~rie~nP~di~sw~~lire-~qt~-~~~~~R~~YEq~~~~FP~s~r~W~~yi~~El~skdfe~VEkLF~RCLvkvLn-- 85 (656)
T KOG1914|consen 10 RERIEENPYDIDSWSQLIRE-AQTQ-PIDKVRETYEQLVNVFPSSPRAWKLYIERELASKDFESVEKLFSRCLVKVLN-- 85 (656)
T ss_pred HHHHhcCCccHHHHHHHHHH-HccC-CHHHHHHHHHHHhccCCCCcHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHhh--
Confidence 56678999999999998777 5555 9999999999999999999999999999999999999999999999875211
Q ss_pred cccchhhhHHHHHHhhhccccccccCCCccccccCcccHHHHHHHHHHhhhcCccchHHHHHHHHHHH---------HcC
Q 012143 110 ADIARPELLSLVQIHHAQCLLPESSGDNSLDKELEPEELEEILSKLKESMQSDTRQAVVWNTLGLILL---------KSG 180 (470)
Q Consensus 110 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~---------~~~ 180 (470)
-+.+. ++... +...-+.. .-......+|-+....-+..++....+|...+..+. .+.
T Consensus 86 -----lDLW~---lYl~Y--VR~~~~~~----~~~r~~m~qAy~f~l~kig~di~s~siW~eYi~FL~~vea~gk~ee~Q 151 (656)
T KOG1914|consen 86 -----LDLWK---LYLSY--VRETKGKL----FGYREKMVQAYDFALEKIGMDIKSYSIWDEYINFLEGVEAVGKYEENQ 151 (656)
T ss_pred -----HhHHH---HHHHH--HHHHccCc----chHHHHHHHHHHHHHHHhccCcccchhHHHHHHHHHcccccccHHHHH
Confidence 22221 11110 00001110 000011122222222223355666666666555432 334
Q ss_pred ChHHHHHHHHHHhhcCCCChH-HHH-------------HHHHHHHHcCCHHHHHHHHHHHHhh-------CCC----ChH
Q 012143 181 RLQSSISVLSSLLAVDPNNCD-CIG-------------NLGIAYFQSGDMEQSAKCFQDLILK-------DQN----HPA 235 (470)
Q Consensus 181 ~~~~A~~~~~~a~~~~~~~~~-~~~-------------~la~~~~~~g~~~~A~~~~~~~l~~-------~p~----~~~ 235 (470)
+.+.-...|++++...-.+.+ .|. ..=.+-.....|..|...+++...+ +|. ...
T Consensus 152 RI~~vRriYqral~tPm~nlEkLW~DY~~fE~~IN~~tarK~i~e~s~~Ym~AR~~~qel~~lt~GL~r~~~~vp~~~T~ 231 (656)
T KOG1914|consen 152 RITAVRRIYQRALVTPMHNLEKLWKDYEAFEQEINIITARKFIGERSPEYMNARRVYQELQNLTRGLNRNAPAVPPKGTK 231 (656)
T ss_pred HHHHHHHHHHHHhcCccccHHHHHHHHHHHHHHHHHHHHHHHHHhhCHHHHHHHHHHHHHHHHHhhhcccCCCCCCCCCh
Confidence 566677788888764333321 111 1112223445667777777665432 111 111
Q ss_pred -------HHHHHHHHHHhhhcccccccccchhhhhHHHhcCCH--HHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCC--
Q 012143 236 -------ALINYAALLLCKYGSVLAGAGANTGEGACLDQASAV--NVAKECLLAALKADPKAAHIWANLANAYYLTGD-- 304 (470)
Q Consensus 236 -------~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~A~~~~~~~~~~~p~~~~~~~~la~~~~~~g~-- 304 (470)
.|.++...-. .+.. . ...|.. ..-.-.+++++..-+-.+++|+.-+..+...++
T Consensus 232 ~e~~qv~~W~n~I~wEk--sNpL-~------------t~~~~~~~~Rv~yayeQ~ll~l~~~peiWy~~s~yl~~~s~l~ 296 (656)
T KOG1914|consen 232 DEIQQVELWKNWIKWEK--SNPL-R------------TLDGTMLTRRVMYAYEQCLLYLGYHPEIWYDYSMYLIEISDLL 296 (656)
T ss_pred HHHHHHHHHHHHHHHHh--cCCc-c------------cccccHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhhHHH
Confidence 1221111110 0000 0 001111 123345667777667777777766665555555
Q ss_pred ------------hhHHHHHHHHHHhcCCCc-ccHHHHHHHHHHHHhhhccCchHHhhhhHHHHHHHhhcCCCCCCCcHHH
Q 012143 305 ------------HRSSGKCLEKAAKLEPNC-MSTRYAVAVSRIKDAERSQEPTEQLSWAGNEMASILREGDPVQIEPPIA 371 (470)
Q Consensus 305 ------------~~~A~~~~~~a~~~~p~~-~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 371 (470)
.+++..+|++++...-.. ...++.++ ...+........+......+.+...... +...+
T Consensus 297 ~~~~d~~~a~~~t~e~~~~yEr~I~~l~~~~~~Ly~~~a--~~eE~~~~~n~~~~~~~~~~~ll~~~~~------~~tLv 368 (656)
T KOG1914|consen 297 TEKGDVPDAKSLTDEAASIYERAIEGLLKENKLLYFALA--DYEESRYDDNKEKKVHEIYNKLLKIEDI------DLTLV 368 (656)
T ss_pred HHhcccccchhhHHHHHHHHHHHHHHHHHHHHHHHHHHH--hhHHHhcccchhhhhHHHHHHHHhhhcc------CCcee
Confidence 567788888877643222 11222222 2222111111111111111112111111 12245
Q ss_pred HHHHHHHHhccccHHHHHHHHHHHhcchhh--hhHhhHHH-HHHHhccHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHc
Q 012143 372 WAGFAAVQKTHHEVAAAFETEENELSKMEE--CAGAGESA-FLDQASAVNVAKECLLAALKADPKAAHIWANLANAYYLT 448 (470)
Q Consensus 372 ~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~--~~~~~l~~-~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~ 448 (470)
|..+-..-.+..-...|...|.++-+.... .++..-|. -|.-.++..-|...|+--+...++.+..-......+...
T Consensus 369 ~~~~mn~irR~eGlkaaR~iF~kaR~~~r~~hhVfVa~A~mEy~cskD~~~AfrIFeLGLkkf~d~p~yv~~YldfL~~l 448 (656)
T KOG1914|consen 369 YCQYMNFIRRAEGLKAARKIFKKAREDKRTRHHVFVAAALMEYYCSKDKETAFRIFELGLKKFGDSPEYVLKYLDFLSHL 448 (656)
T ss_pred hhHHHHHHHHhhhHHHHHHHHHHHhhccCCcchhhHHHHHHHHHhcCChhHHHHHHHHHHHhcCCChHHHHHHHHHHHHh
Confidence 666666666666777777777775543322 22222222 234567888888888888888888888777777788888
Q ss_pred CChHHHHHHHHHHHHh
Q 012143 449 GDHRSSGKCLEKVLMV 464 (470)
Q Consensus 449 g~~~~A~~~~~~al~~ 464 (470)
|+-..|...|++++..
T Consensus 449 Ndd~N~R~LFEr~l~s 464 (656)
T KOG1914|consen 449 NDDNNARALFERVLTS 464 (656)
T ss_pred CcchhHHHHHHHHHhc
Confidence 8888888888888765
|
|
| >KOG4555 consensus TPR repeat-containing protein [Function unknown] | Back alignment and domain information |
|---|
Probab=98.52 E-value=1.8e-06 Score=62.10 Aligned_cols=91 Identities=15% Similarity=0.238 Sum_probs=82.2
Q ss_pred cCcccHHHHHHHHHHhhhcCccchHHHHHHHHHHHHcCChHHHHHHHHHHhhcCCCC----hHHHHHHHHHHHHcCCHHH
Q 012143 143 LEPEELEEILSKLKESMQSDTRQAVVWNTLGLILLKSGRLQSSISVLSSLLAVDPNN----CDCIGNLGIAYFQSGDMEQ 218 (470)
Q Consensus 143 ~~~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~----~~~~~~la~~~~~~g~~~~ 218 (470)
...|+++.|++.|.+++..-|..+.+|.+.+..+.-+|+.++|++.+++++++.... ..++...|.+|..+|+.+.
T Consensus 54 aE~g~Ld~AlE~F~qal~l~P~raSayNNRAQa~RLq~~~e~ALdDLn~AleLag~~trtacqa~vQRg~lyRl~g~dd~ 133 (175)
T KOG4555|consen 54 AEAGDLDGALELFGQALCLAPERASAYNNRAQALRLQGDDEEALDDLNKALELAGDQTRTACQAFVQRGLLYRLLGNDDA 133 (175)
T ss_pred HhccchHHHHHHHHHHHHhcccchHhhccHHHHHHHcCChHHHHHHHHHHHHhcCccchHHHHHHHHHHHHHHHhCchHH
Confidence 366888999999999999999999999999999999999999999999999985543 3578999999999999999
Q ss_pred HHHHHHHHHhhCCCC
Q 012143 219 SAKCFQDLILKDQNH 233 (470)
Q Consensus 219 A~~~~~~~l~~~p~~ 233 (470)
|...|+.+-++....
T Consensus 134 AR~DFe~AA~LGS~F 148 (175)
T KOG4555|consen 134 ARADFEAAAQLGSKF 148 (175)
T ss_pred HHHhHHHHHHhCCHH
Confidence 999999998876543
|
|
| >KOG2796 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=98.48 E-value=2.7e-05 Score=63.55 Aligned_cols=225 Identities=19% Similarity=0.175 Sum_probs=159.3
Q ss_pred cchhhhcccchhhhhcChhhHHHHHHHHHHhC-------------CCC-----h-hHHHHHHHHHHHhCChhHHHHHHHH
Q 012143 40 DGDQSGLGTSSSSREEKVSSLKTGLVHVARKM-------------PKN-----A-HAHFLLGLMYQRLGQPLKAVSSYEK 100 (470)
Q Consensus 40 ~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~-------------p~~-----~-~~~~~l~~~~~~~g~~~~A~~~~~~ 100 (470)
.+.|...-.+ +.+...+++|...+...-..+ |+. | ......|.+....|+..+.+.-+..
T Consensus 69 lq~wT~r~~~-l~kLR~~~~a~~EL~~f~~lD~pdl~Yey~p~iyp~rrGSmVPFsmR~lhAe~~~~lgnpqesLdRl~~ 147 (366)
T KOG2796|consen 69 LQLWTVRLAL-LVKLRLFQNAEMELEPFGNLDQPDLYYEYYPHVYPGRRGSMVPFSMRILHAELQQYLGNPQESLDRLHK 147 (366)
T ss_pred HHHHHHHHHH-HHHHhhhHHHHhhhhhhccCCCcceeeeeccccCCCCcCccccHHHHHHHHHHHHhcCCcHHHHHHHHH
Confidence 3345555555 666677777776666543333 221 1 1233456777778888888777766
Q ss_pred HHHHHhhhhcccchhhhHHHHHHhhhccccccccCCCccccccCcccH-HHHHHHHHHhhhcCccchHHHHHHHHHHHHc
Q 012143 101 AEEILLRCEADIARPELLSLVQIHHAQCLLPESSGDNSLDKELEPEEL-EEILSKLKESMQSDTRQAVVWNTLGLILLKS 179 (470)
Q Consensus 101 al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~ 179 (470)
....-.+ ... -.+.+.. +..+..+++-+ ..+.+.+..++...
T Consensus 148 L~~~V~~---------ii~----------------------~~e~~~~~ESsv~lW~KRl------~~Vmy~~~~~llG~ 190 (366)
T KOG2796|consen 148 LKTVVSK---------ILA----------------------NLEQGLAEESSIRLWRKRL------GRVMYSMANCLLGM 190 (366)
T ss_pred HHHHHHH---------HHH----------------------HHHhccchhhHHHHHHHHH------HHHHHHHHHHHhcc
Confidence 5543110 000 0011111 34445544433 34667788899999
Q ss_pred CChHHHHHHHHHHhhcC-CCChHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCC------CChHHHHHHHHHHHhhhcccc
Q 012143 180 GRLQSSISVLSSLLAVD-PNNCDCIGNLGIAYFQSGDMEQSAKCFQDLILKDQ------NHPAALINYAALLLCKYGSVL 252 (470)
Q Consensus 180 ~~~~~A~~~~~~a~~~~-~~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p------~~~~~~~~l~~~~~~~~~~~~ 252 (470)
|.|.-....+.+.++.+ |..+.....+|.+.++.|+.+.|..+|+++-+... .......+.+
T Consensus 191 kEy~iS~d~~~~vi~~~~e~~p~L~s~Lgr~~MQ~GD~k~a~~yf~~vek~~~kL~~~q~~~~V~~n~a----------- 259 (366)
T KOG2796|consen 191 KEYVLSVDAYHSVIKYYPEQEPQLLSGLGRISMQIGDIKTAEKYFQDVEKVTQKLDGLQGKIMVLMNSA----------- 259 (366)
T ss_pred hhhhhhHHHHHHHHHhCCcccHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHhhhhccchhHHHHhhhh-----------
Confidence 99999999999999988 67888999999999999999999999997654321 1122233333
Q ss_pred cccccchhhhhHHHhcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCChhHHHHHHHHHHhcCCCcc
Q 012143 253 AGAGANTGEGACLDQASAVNVAKECLLAALKADPKAAHIWANLANAYYLTGDHRSSGKCLEKAAKLEPNCM 323 (470)
Q Consensus 253 ~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~p~~~ 323 (470)
.++.-.+++..|...|.+++..+|.++.+..+.|.|....|+..+|++.++.+++..|...
T Consensus 260 ----------~i~lg~nn~a~a~r~~~~i~~~D~~~~~a~NnKALcllYlg~l~DAiK~~e~~~~~~P~~~ 320 (366)
T KOG2796|consen 260 ----------FLHLGQNNFAEAHRFFTEILRMDPRNAVANNNKALCLLYLGKLKDALKQLEAMVQQDPRHY 320 (366)
T ss_pred ----------hheecccchHHHHHHHhhccccCCCchhhhchHHHHHHHHHHHHHHHHHHHHHhccCCccc
Confidence 3344689999999999999999999999999999999999999999999999999999854
|
|
| >KOG4642 consensus Chaperone-dependent E3 ubiquitin protein ligase (contains TPR repeats) [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=98.47 E-value=5e-07 Score=72.22 Aligned_cols=103 Identities=14% Similarity=0.122 Sum_probs=95.9
Q ss_pred CcccchhhhhhhhhhhhhhhhHHHHHHHHHHHHhcCCCCcchhhhcccchhhhhcChhhHHHHHHHHHHhCCCChhHHHH
Q 012143 1 MSKEMDVAEVEGKKINKLGKCRSRISSKMDSALEFGVDADGDQSGLGTSSSSREEKVSSLKTGLVHVARKMPKNAHAHFL 80 (470)
Q Consensus 1 ~~~~~~~~~~~~~~~~~~g~~~~a~~~~~~~~l~~~p~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~ 80 (470)
|+.-.++..+.|+.++.-.++..++ +.|.++|.++|..+.-|.+.+.+ +++..+++.......++++++|+.+.+++.
T Consensus 6 ~s~~a~qlkE~gnk~f~~k~y~~ai-~~y~raI~~nP~~~~Y~tnralc-hlk~~~~~~v~~dcrralql~~N~vk~h~f 83 (284)
T KOG4642|consen 6 MSESAEQLKEQGNKCFIPKRYDDAI-DCYSRAICINPTVASYYTNRALC-HLKLKHWEPVEEDCRRALQLDPNLVKAHYF 83 (284)
T ss_pred cchHHHHHHhccccccchhhhchHH-HHHHHHHhcCCCcchhhhhHHHH-HHHhhhhhhhhhhHHHHHhcChHHHHHHHH
Confidence 3445566777899999999999999 89999999999999999999999 999999999999999999999999999999
Q ss_pred HHHHHHHhCChhHHHHHHHHHHHHH
Q 012143 81 LGLMYQRLGQPLKAVSSYEKAEEIL 105 (470)
Q Consensus 81 l~~~~~~~g~~~~A~~~~~~al~~~ 105 (470)
+|.+......|++|+..++++.++.
T Consensus 84 lg~~~l~s~~~~eaI~~Lqra~sl~ 108 (284)
T KOG4642|consen 84 LGQWLLQSKGYDEAIKVLQRAYSLL 108 (284)
T ss_pred HHHHHHhhccccHHHHHHHHHHHHH
Confidence 9999999999999999999998764
|
|
| >PF13431 TPR_17: Tetratricopeptide repeat | Back alignment and domain information |
|---|
Probab=98.44 E-value=2e-07 Score=51.18 Aligned_cols=34 Identities=32% Similarity=0.528 Sum_probs=31.7
Q ss_pred HHHHHHhcCCCcHHHHHHHHHHHHHcCChHHHHH
Q 012143 423 CLLAALKADPKAAHIWANLANAYYLTGDHRSSGK 456 (470)
Q Consensus 423 ~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~ 456 (470)
+|+++++++|+++.+|+++|.+|...|++++|++
T Consensus 1 ~y~kAie~~P~n~~a~~nla~~~~~~g~~~~A~~ 34 (34)
T PF13431_consen 1 CYKKAIELNPNNAEAYNNLANLYLNQGDYEEAIA 34 (34)
T ss_pred ChHHHHHHCCCCHHHHHHHHHHHHHCcCHHhhcC
Confidence 4789999999999999999999999999999963
|
|
| >PF04184 ST7: ST7 protein; InterPro: IPR007311 The ST7 (for suppression of tumorigenicity 7) protein is thought to be a tumour suppressor gene | Back alignment and domain information |
|---|
Probab=98.43 E-value=2.3e-05 Score=70.28 Aligned_cols=227 Identities=15% Similarity=0.063 Sum_probs=142.2
Q ss_pred hhhhcChhhHHHHHHHHHHhCCCChhHHHHHHHHHHHhCChhHHHHHHHHHHHHHhhhhcccchhhhHHHHHHhhhcccc
Q 012143 51 SSREEKVSSLKTGLVHVARKMPKNAHAHFLLGLMYQRLGQPLKAVSSYEKAEEILLRCEADIARPELLSLVQIHHAQCLL 130 (470)
Q Consensus 51 ~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 130 (470)
..+..+...-++.-.++++++|+.++++..|+.-.. .-..+|..+|+++++..... +...
T Consensus 178 AWRERnp~aRIkaA~eALei~pdCAdAYILLAEEeA--~Ti~Eae~l~rqAvkAgE~~----------------lg~s-- 237 (539)
T PF04184_consen 178 AWRERNPQARIKAAKEALEINPDCADAYILLAEEEA--STIVEAEELLRQAVKAGEAS----------------LGKS-- 237 (539)
T ss_pred HHhcCCHHHHHHHHHHHHHhhhhhhHHHhhcccccc--cCHHHHHHHHHHHHHHHHHh----------------hchh--
Confidence 456677778888889999999999999999887543 35789999999999864221 0000
Q ss_pred ccccCCCccccccCcccHHHHHHHHHHhhhcCccc--hHHHHHHHHHHHHcCChHHHHHHHHHHhhcCCC--ChHHHHHH
Q 012143 131 PESSGDNSLDKELEPEELEEILSKLKESMQSDTRQ--AVVWNTLGLILLKSGRLQSSISVLSSLLAVDPN--NCDCIGNL 206 (470)
Q Consensus 131 ~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~p~~--~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~--~~~~~~~l 206 (470)
...+....+-......+.+ ..+...+|.|..+.|+.++|++.++..++..|. +..++.+|
T Consensus 238 ----------------~~~~~~g~~~e~~~~Rdt~~~~y~KrRLAmCarklGr~~EAIk~~rdLlke~p~~~~l~IrenL 301 (539)
T PF04184_consen 238 ----------------QFLQHHGHFWEAWHRRDTNVLVYAKRRLAMCARKLGRLREAIKMFRDLLKEFPNLDNLNIRENL 301 (539)
T ss_pred ----------------hhhhcccchhhhhhccccchhhhhHHHHHHHHHHhCChHHHHHHHHHHHhhCCccchhhHHHHH
Confidence 0000000011111111111 345667999999999999999999999988775 45689999
Q ss_pred HHHHHHcCCHHHHHHHHHHHHhh-CCCChHHHHHHHHHHHhhhcccccccccchhhhhHHHhcC---CHHHHHHHHHHHH
Q 012143 207 GIAYFQSGDMEQSAKCFQDLILK-DQNHPAALINYAALLLCKYGSVLAGAGANTGEGACLDQAS---AVNVAKECLLAAL 282 (470)
Q Consensus 207 a~~~~~~g~~~~A~~~~~~~l~~-~p~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~A~~~~~~~~ 282 (470)
..++..++.|.++...+.+.-++ -|+.....+.-+.+..+...+.. .+ ....+.| --..|++.+.+++
T Consensus 302 ie~LLelq~Yad~q~lL~kYdDi~lpkSAti~YTaALLkaRav~d~f-s~-------e~a~rRGls~ae~~aveAi~RAv 373 (539)
T PF04184_consen 302 IEALLELQAYADVQALLAKYDDISLPKSATICYTAALLKARAVGDKF-SP-------EAASRRGLSPAEMNAVEAIHRAV 373 (539)
T ss_pred HHHHHhcCCHHHHHHHHHHhccccCCchHHHHHHHHHHHHHhhcccc-Cc-------hhhhhcCCChhHHHHHHHHHHHH
Confidence 99999999999999999886433 24444444444333322110000 00 0111222 1234788999999
Q ss_pred hcCCCCHHHHHHHHH------HHHHcCChhHHHHHHHHHHhcCCCc
Q 012143 283 KADPKAAHIWANLAN------AYYLTGDHRSSGKCLEKAAKLEPNC 322 (470)
Q Consensus 283 ~~~p~~~~~~~~la~------~~~~~g~~~~A~~~~~~a~~~~p~~ 322 (470)
+.+|..+..+..+=. -..+.|+ .||+.+---.++.-.+.
T Consensus 374 efNPHVp~YLLe~K~LilPPehilkrGD-SEAiaYAf~hL~hWk~v 418 (539)
T PF04184_consen 374 EFNPHVPKYLLEMKSLILPPEHILKRGD-SEAIAYAFFHLQHWKRV 418 (539)
T ss_pred HhCCCCchhhhccCCCCCChHHhcCCCc-HHHHHHHHHHHHHHhcC
Confidence 999987766554321 2344554 67777665555544333
|
The molecular function of this protein is uncertain. |
| >KOG1586 consensus Protein required for fusion of vesicles in vesicular transport, alpha-SNAP [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=98.43 E-value=4.7e-05 Score=61.09 Aligned_cols=133 Identities=12% Similarity=0.087 Sum_probs=92.8
Q ss_pred CcccHHHHHHHHHHhhhcCccc------hHHHHHHHHHHHHc-CChHHHHHHHHHHhhcCCCC------hHHHHHHHHHH
Q 012143 144 EPEELEEILSKLKESMQSDTRQ------AVVWNTLGLILLKS-GRLQSSISVLSSLLAVDPNN------CDCIGNLGIAY 210 (470)
Q Consensus 144 ~~~~~~~A~~~~~~~~~~~p~~------~~~~~~l~~~~~~~-~~~~~A~~~~~~a~~~~~~~------~~~~~~la~~~ 210 (470)
+.++..+|+.++++++++..+. +.-+..+|.+|... .++++|+.+|+++-+..... ..++...+..-
T Consensus 85 kk~~~~eAv~cL~~aieIyt~~Grf~~aAk~~~~iaEiyEsdl~d~ekaI~~YE~Aae~yk~ees~ssANKC~lKvA~ya 164 (288)
T KOG1586|consen 85 KKVDPEEAVNCLEKAIEIYTDMGRFTMAAKHHIEIAEIYESDLQDFEKAIAHYEQAAEYYKGEESVSSANKCLLKVAQYA 164 (288)
T ss_pred hccChHHHHHHHHHHHHHHHhhhHHHHHHhhhhhHHHHHhhhHHHHHHHHHHHHHHHHHHcchhhhhhHHHHHHHHHHHH
Confidence 4445566666666666654433 22345788888766 89999999999987753322 34677778888
Q ss_pred HHcCCHHHHHHHHHHHHhhCCCChHHHHHH-HHHHHhhhcccccccccchhhhhHHHhcCCHHHHHHHHHHHHhcCCCCH
Q 012143 211 FQSGDMEQSAKCFQDLILKDQNHPAALINY-AALLLCKYGSVLAGAGANTGEGACLDQASAVNVAKECLLAALKADPKAA 289 (470)
Q Consensus 211 ~~~g~~~~A~~~~~~~l~~~p~~~~~~~~l-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~p~~~ 289 (470)
..+++|.+|+..|+++....-+++-..+.. +..+. .|.|+.-..+.-.+...+++-.+++|...
T Consensus 165 a~leqY~~Ai~iyeqva~~s~~n~LLKys~Kdyflk---------------AgLChl~~~D~v~a~~ALeky~~~dP~F~ 229 (288)
T KOG1586|consen 165 AQLEQYSKAIDIYEQVARSSLDNNLLKYSAKDYFLK---------------AGLCHLCKADEVNAQRALEKYQELDPAFT 229 (288)
T ss_pred HHHHHHHHHHHHHHHHHHHhccchHHHhHHHHHHHH---------------HHHHhHhcccHHHHHHHHHHHHhcCCccc
Confidence 899999999999999987766655443332 22222 36666677888888888888889999854
Q ss_pred HH
Q 012143 290 HI 291 (470)
Q Consensus 290 ~~ 291 (470)
..
T Consensus 230 ds 231 (288)
T KOG1586|consen 230 DS 231 (288)
T ss_pred cc
Confidence 43
|
|
| >KOG2471 consensus TPR repeat-containing protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.42 E-value=2.2e-05 Score=69.74 Aligned_cols=153 Identities=14% Similarity=0.163 Sum_probs=106.4
Q ss_pred cCcccHHHHHHHHHHhhhcCccchHHHHHHHHHHHHcCChHHHHHHHHHH-hhcCCC--------ChHHHHHHHHHHHHc
Q 012143 143 LEPEELEEILSKLKESMQSDTRQAVVWNTLGLILLKSGRLQSSISVLSSL-LAVDPN--------NCDCIGNLGIAYFQS 213 (470)
Q Consensus 143 ~~~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~a-~~~~~~--------~~~~~~~la~~~~~~ 213 (470)
+...++..+..-.+-++....+.+.+++..+..++..|++.+|.+.+... +...|. ....|.++|.+++++
T Consensus 217 lq~~~Lk~~krevK~vmn~a~~s~~~l~LKsq~eY~~gn~~kA~KlL~~sni~~~~g~~~T~q~~~cif~NNlGcIh~~~ 296 (696)
T KOG2471|consen 217 LQTRNLKLAKREVKHVMNIAQDSSMALLLKSQLEYAHGNHPKAMKLLLVSNIHKEAGGTITPQLSSCIFNNNLGCIHYQL 296 (696)
T ss_pred HHHHHHHHHHHhhhhhhhhcCCCcHHHHHHHHHHHHhcchHHHHHHHHhcccccccCccccchhhhheeecCcceEeeeh
Confidence 34444445555555555566677889999999999999999999988653 222332 223578999999999
Q ss_pred CCHHHHHHHHHHHHhhCCCChHHHHHHHHHHHhhhcc---cccccccchhhhhHHHhcCCHHHHHHHHHHHHhcCCCCHH
Q 012143 214 GDMEQSAKCFQDLILKDQNHPAALINYAALLLCKYGS---VLAGAGANTGEGACLDQASAVNVAKECLLAALKADPKAAH 290 (470)
Q Consensus 214 g~~~~A~~~~~~~l~~~p~~~~~~~~l~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~p~~~~ 290 (470)
|.|.-+..+|.++++. ......-| +....-. ........++.|..+...|++-.|.++|.++......+|.
T Consensus 297 ~~y~~~~~~F~kAL~N----~c~qL~~g--~~~~~~~tls~nks~eilYNcG~~~Lh~grPl~AfqCf~~av~vfh~nPr 370 (696)
T KOG2471|consen 297 GCYQASSVLFLKALRN----SCSQLRNG--LKPAKTFTLSQNKSMEILYNCGLLYLHSGRPLLAFQCFQKAVHVFHRNPR 370 (696)
T ss_pred hhHHHHHHHHHHHHHH----HHHHHhcc--CCCCcceehhcccchhhHHhhhHHHHhcCCcHHHHHHHHHHHHHHhcCcH
Confidence 9999999999999961 11100000 0000000 0012334455677777999999999999999999999999
Q ss_pred HHHHHHHHHHH
Q 012143 291 IWANLANAYYL 301 (470)
Q Consensus 291 ~~~~la~~~~~ 301 (470)
.|..++.+...
T Consensus 371 lWLRlAEcCim 381 (696)
T KOG2471|consen 371 LWLRLAECCIM 381 (696)
T ss_pred HHHHHHHHHHH
Confidence 99999998875
|
|
| >KOG4642 consensus Chaperone-dependent E3 ubiquitin protein ligase (contains TPR repeats) [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=98.42 E-value=1.1e-06 Score=70.43 Aligned_cols=88 Identities=17% Similarity=0.152 Sum_probs=84.5
Q ss_pred ccCcccHHHHHHHHHHhhhcCccchHHHHHHHHHHHHcCChHHHHHHHHHHhhcCCCChHHHHHHHHHHHHcCCHHHHHH
Q 012143 142 ELEPEELEEILSKLKESMQSDTRQAVVWNTLGLILLKSGRLQSSISVLSSLLAVDPNNCDCIGNLGIAYFQSGDMEQSAK 221 (470)
Q Consensus 142 ~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~la~~~~~~g~~~~A~~ 221 (470)
++...+|+.|+..|.+++.++|..+..+.+.+.++++.++++.+....+++++++|+....++.+|........+++|+.
T Consensus 20 ~f~~k~y~~ai~~y~raI~~nP~~~~Y~tnralchlk~~~~~~v~~dcrralql~~N~vk~h~flg~~~l~s~~~~eaI~ 99 (284)
T KOG4642|consen 20 CFIPKRYDDAIDCYSRAICINPTVASYYTNRALCHLKLKHWEPVEEDCRRALQLDPNLVKAHYFLGQWLLQSKGYDEAIK 99 (284)
T ss_pred ccchhhhchHHHHHHHHHhcCCCcchhhhhHHHHHHHhhhhhhhhhhHHHHHhcChHHHHHHHHHHHHHHhhccccHHHH
Confidence 67788899999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHhh
Q 012143 222 CFQDLILK 229 (470)
Q Consensus 222 ~~~~~l~~ 229 (470)
.++++..+
T Consensus 100 ~Lqra~sl 107 (284)
T KOG4642|consen 100 VLQRAYSL 107 (284)
T ss_pred HHHHHHHH
Confidence 99999654
|
|
| >PF13428 TPR_14: Tetratricopeptide repeat | Back alignment and domain information |
|---|
Probab=98.39 E-value=8.3e-07 Score=52.50 Aligned_cols=41 Identities=22% Similarity=0.388 Sum_probs=21.9
Q ss_pred HHHHHHHHHHHHcCChHHHHHHHHHHhhcCCCChHHHHHHH
Q 012143 167 VVWNTLGLILLKSGRLQSSISVLSSLLAVDPNNCDCIGNLG 207 (470)
Q Consensus 167 ~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~la 207 (470)
.++..+|.+|...|++++|++.|+++++.+|+++.++..+|
T Consensus 2 ~~~~~la~~~~~~G~~~~A~~~~~~~l~~~P~~~~a~~~La 42 (44)
T PF13428_consen 2 AAWLALARAYRRLGQPDEAERLLRRALALDPDDPEAWRALA 42 (44)
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHHCcCCHHHHHHhh
Confidence 34455555555555555555555555555555555555544
|
|
| >KOG4555 consensus TPR repeat-containing protein [Function unknown] | Back alignment and domain information |
|---|
Probab=98.37 E-value=1.5e-05 Score=57.43 Aligned_cols=63 Identities=16% Similarity=0.249 Sum_probs=44.3
Q ss_pred HHHHHHHHHHcCChHHHHHHHHHHhhcCCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCC
Q 012143 169 WNTLGLILLKSGRLQSSISVLSSLLAVDPNNCDCIGNLGIAYFQSGDMEQSAKCFQDLILKDQ 231 (470)
Q Consensus 169 ~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p 231 (470)
+-..|......|+.+.|++.|.+++.+.|..+.+|.+.+..+..+|+.++|+..+++++++..
T Consensus 46 LEl~~valaE~g~Ld~AlE~F~qal~l~P~raSayNNRAQa~RLq~~~e~ALdDLn~AleLag 108 (175)
T KOG4555|consen 46 LELKAIALAEAGDLDGALELFGQALCLAPERASAYNNRAQALRLQGDDEEALDDLNKALELAG 108 (175)
T ss_pred HHHHHHHHHhccchHHHHHHHHHHHHhcccchHhhccHHHHHHHcCChHHHHHHHHHHHHhcC
Confidence 334566666677777777777777777777777777777777777777777777777776543
|
|
| >PF13428 TPR_14: Tetratricopeptide repeat | Back alignment and domain information |
|---|
Probab=98.34 E-value=1.7e-06 Score=51.21 Aligned_cols=43 Identities=19% Similarity=0.221 Sum_probs=40.2
Q ss_pred hHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCChHHHHHHHH
Q 012143 200 CDCIGNLGIAYFQSGDMEQSAKCFQDLILKDQNHPAALINYAA 242 (470)
Q Consensus 200 ~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~l~~ 242 (470)
+.++..+|.+|..+|++++|+..|+++++.+|+++.++..++.
T Consensus 1 p~~~~~la~~~~~~G~~~~A~~~~~~~l~~~P~~~~a~~~La~ 43 (44)
T PF13428_consen 1 PAAWLALARAYRRLGQPDEAERLLRRALALDPDDPEAWRALAQ 43 (44)
T ss_pred CHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCcCCHHHHHHhhh
Confidence 4678999999999999999999999999999999999998874
|
|
| >PF05843 Suf: Suppressor of forked protein (Suf); InterPro: IPR008847 This domain consists of several eukaryotic suppressor of forked (Suf) like proteins | Back alignment and domain information |
|---|
Probab=98.33 E-value=2.9e-05 Score=67.63 Aligned_cols=135 Identities=18% Similarity=0.250 Sum_probs=107.9
Q ss_pred HHHHHHHHHHHcCChHHHHHHHHHHhhcCCCChHHHHHHHHHHHH-cCCHHHHHHHHHHHHhhCCCChHHHHHHHHHHHh
Q 012143 168 VWNTLGLILLKSGRLQSSISVLSSLLAVDPNNCDCIGNLGIAYFQ-SGDMEQSAKCFQDLILKDQNHPAALINYAALLLC 246 (470)
Q Consensus 168 ~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~la~~~~~-~g~~~~A~~~~~~~l~~~p~~~~~~~~l~~~~~~ 246 (470)
+|..+.....+.+..+.|..+|.++.+..+....+|...|.+-+. .++.+.|...|+.+++..|.+...|..+...+.
T Consensus 3 v~i~~m~~~~r~~g~~~aR~vF~~a~~~~~~~~~vy~~~A~~E~~~~~d~~~A~~Ife~glk~f~~~~~~~~~Y~~~l~- 81 (280)
T PF05843_consen 3 VWIQYMRFMRRTEGIEAARKVFKRARKDKRCTYHVYVAYALMEYYCNKDPKRARKIFERGLKKFPSDPDFWLEYLDFLI- 81 (280)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHCCCCS-THHHHHHHHHHHHTCS-HHHHHHHHHHHHHHHTT-HHHHHHHHHHHH-
T ss_pred HHHHHHHHHHHhCChHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHH-
Confidence 566777777788889999999999987666678889999998666 566666999999999999999998888887776
Q ss_pred hhcccccccccchhhhhHHHhcCCHHHHHHHHHHHHhcCCCCH---HHHHHHHHHHHHcCChhHHHHHHHHHHhcCCCcc
Q 012143 247 KYGSVLAGAGANTGEGACLDQASAVNVAKECLLAALKADPKAA---HIWANLANAYYLTGDHRSSGKCLEKAAKLEPNCM 323 (470)
Q Consensus 247 ~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~p~~~---~~~~~la~~~~~~g~~~~A~~~~~~a~~~~p~~~ 323 (470)
..++.+.|..+|++++..-|... .+|......-...|+.+....+.+++.+..|++.
T Consensus 82 --------------------~~~d~~~aR~lfer~i~~l~~~~~~~~iw~~~i~fE~~~Gdl~~v~~v~~R~~~~~~~~~ 141 (280)
T PF05843_consen 82 --------------------KLNDINNARALFERAISSLPKEKQSKKIWKKFIEFESKYGDLESVRKVEKRAEELFPEDN 141 (280)
T ss_dssp --------------------HTT-HHHHHHHHHHHCCTSSCHHHCHHHHHHHHHHHHHHS-HHHHHHHHHHHHHHTTTS-
T ss_pred --------------------HhCcHHHHHHHHHHHHHhcCchhHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhhhh
Confidence 68889999999999998766644 5788888888889999999999999999888744
|
The Drosophila melanogaster suppressor of forked [Su(f)] protein shares homology with the Saccharomyces cerevisiae RNA14 protein and the 77 kDa subunit of Homo sapiens cleavage stimulation factor, which are proteins involved in mRNA 3' end formation. This suggests a role for Su(f) in mRNA 3' end formation in Drosophila. The su(f) gene produces three transcripts; two of them are polyadenylated at the end of the transcription unit, and one is a truncated transcript, polyadenylated in intron 4. It is thought that su(f) plays a role in the regulation of poly(A) site utilisation and the GU-rich sequence is important for this regulation to occur [].; GO: 0006397 mRNA processing, 0005634 nucleus; PDB: 2L9B_B 2OND_B 2OOE_A 4E85_B 4EBA_C 4E6H_A 2UY1_B. |
| >KOG1550 consensus Extracellular protein SEL-1 and related proteins [Cell wall/membrane/envelope biogenesis; Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=98.30 E-value=0.00067 Score=65.28 Aligned_cols=290 Identities=14% Similarity=0.041 Sum_probs=180.2
Q ss_pred hhHHHHHHHHHHHHHhhhhcccchhhhHHHHHHhhhccccccccCCCccccccCcccHHHHHHHHHHhhhc-----Cccc
Q 012143 91 PLKAVSSYEKAEEILLRCEADIARPELLSLVQIHHAQCLLPESSGDNSLDKELEPEELEEILSKLKESMQS-----DTRQ 165 (470)
Q Consensus 91 ~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~-----~p~~ 165 (470)
...|..+++.+.+..- ......++.++..-+. -...|.+.|+.+|+.+... .-.+
T Consensus 228 ~~~a~~~~~~~a~~g~--------------~~a~~~~g~~y~~G~~------g~~~d~e~a~~~l~~aa~~~~~~a~~~~ 287 (552)
T KOG1550|consen 228 LSEAFKYYREAAKLGH--------------SEAQYALGICYLAGTY------GVTQDLESAIEYLKLAAESFKKAATKGL 287 (552)
T ss_pred hhHHHHHHHHHHhhcc--------------hHHHHHHHHHHhhccc------cccccHHHHHHHHHHHHHHHHHHHhhcC
Confidence 4578888888776521 1222333333332212 2457899999999998761 1125
Q ss_pred hHHHHHHHHHHHHcC-----ChHHHHHHHHHHhhcCCCChHHHHHHHHHHHHcC---CHHHHHHHHHHHHhhCCCChHHH
Q 012143 166 AVVWNTLGLILLKSG-----RLQSSISVLSSLLAVDPNNCDCIGNLGIAYFQSG---DMEQSAKCFQDLILKDQNHPAAL 237 (470)
Q Consensus 166 ~~~~~~l~~~~~~~~-----~~~~A~~~~~~a~~~~~~~~~~~~~la~~~~~~g---~~~~A~~~~~~~l~~~p~~~~~~ 237 (470)
+.+...+|.+|.... ++..|..+|.++-.. .++++.+.+|.++..-. ++..|.++|..+.. -.+..+.
T Consensus 288 ~~a~~~lg~~Y~~g~~~~~~d~~~A~~~~~~aA~~--g~~~a~~~lg~~~~~g~~~~d~~~A~~yy~~Aa~--~G~~~A~ 363 (552)
T KOG1550|consen 288 PPAQYGLGRLYLQGLGVEKIDYEKALKLYTKAAEL--GNPDAQYLLGVLYETGTKERDYRRAFEYYSLAAK--AGHILAI 363 (552)
T ss_pred CccccHHHHHHhcCCCCccccHHHHHHHHHHHHhc--CCchHHHHHHHHHHcCCccccHHHHHHHHHHHHH--cCChHHH
Confidence 667888999998854 678899999998776 45778899999988765 67899999999875 4578888
Q ss_pred HHHHHHHHhhhcccccccccchhhhhHHHhcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHc-CChhHHHHHHHHHH
Q 012143 238 INYAALLLCKYGSVLAGAGANTGEGACLDQASAVNVAKECLLAALKADPKAAHIWANLANAYYLT-GDHRSSGKCLEKAA 316 (470)
Q Consensus 238 ~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~la~~~~~~-g~~~~A~~~~~~a~ 316 (470)
+.++.++..- .....+...|..++.++.+.. .+.+...++..+..- +.++.+...+....
T Consensus 364 ~~la~~y~~G-----------------~gv~r~~~~A~~~~k~aA~~g--~~~A~~~~~~~~~~g~~~~~~~~~~~~~~a 424 (552)
T KOG1550|consen 364 YRLALCYELG-----------------LGVERNLELAFAYYKKAAEKG--NPSAAYLLGAFYEYGVGRYDTALALYLYLA 424 (552)
T ss_pred HHHHHHHHhC-----------------CCcCCCHHHHHHHHHHHHHcc--ChhhHHHHHHHHHHccccccHHHHHHHHHH
Confidence 9999988742 124568899999999999887 456566666555443 77777776666555
Q ss_pred hcCCCcccHHHHHHHHHHHHhhhccCchHHhhhhHHHHHHHhhcCCCCCCCcHHHHHHHHHHHhccccHHHHHHHHHHHh
Q 012143 317 KLEPNCMSTRYAVAVSRIKDAERSQEPTEQLSWAGNEMASILREGDPVQIEPPIAWAGFAAVQKTHHEVAAAFETEENEL 396 (470)
Q Consensus 317 ~~~p~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~ 396 (470)
...-..................... ....+...+...+.+..
T Consensus 425 ~~g~~~~q~~a~~l~~~~~~~~~~~--------------------------------------~~~~~~~~~~~~~~~a~ 466 (552)
T KOG1550|consen 425 ELGYEVAQSNAAYLLDQSEEDLFSR--------------------------------------GVISTLERAFSLYSRAA 466 (552)
T ss_pred HhhhhHHhhHHHHHHHhcccccccc--------------------------------------ccccchhHHHHHHHHHH
Confidence 4433322111100000000000000 00113333444444444
Q ss_pred cchhhhhHhhHHHHHHHh----ccHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHH-cC--ChHHHHHHHHHHHHh
Q 012143 397 SKMEECAGAGESAFLDQA----SAVNVAKECLLAALKADPKAAHIWANLANAYYL-TG--DHRSSGKCLEKVLMV 464 (470)
Q Consensus 397 ~~~~~~~~~~l~~~~~~~----~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~-~g--~~~~A~~~~~~al~~ 464 (470)
...+..+...+|.+|..- .+++.|...|.++.... +...+++|.++.. .| ....|..+|.++.+.
T Consensus 467 ~~g~~~a~~~lgd~y~~g~g~~~d~~~a~~~y~~a~~~~---~~~~~nlg~~~e~g~g~~~~~~a~~~~~~~~~~ 538 (552)
T KOG1550|consen 467 AQGNADAILKLGDYYYYGLGTGRDPEKAAAQYARASEQG---AQALFNLGYMHEHGEGIKVLHLAKRYYDQASEE 538 (552)
T ss_pred hccCHHHHhhhcceeeecCCCCCChHHHHHHHHHHHHhh---hHHHhhhhhHHhcCcCcchhHHHHHHHHHHHhc
Confidence 455555555566665543 34777777777777765 7777788877743 12 257777777777653
|
|
| >KOG2796 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=98.30 E-value=0.001 Score=54.76 Aligned_cols=216 Identities=13% Similarity=0.099 Sum_probs=123.2
Q ss_pred chHHHHHHHHHHHHcCChHHHHHHHHHHhhcCCCC------------------h-HHHHHHHHHHHHcCCHHHHHHHHHH
Q 012143 165 QAVVWNTLGLILLKSGRLQSSISVLSSLLAVDPNN------------------C-DCIGNLGIAYFQSGDMEQSAKCFQD 225 (470)
Q Consensus 165 ~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~------------------~-~~~~~la~~~~~~g~~~~A~~~~~~ 225 (470)
+...|...-.++.+...+++|...+...-+++..+ | ......|.+....|+..+.+.-+..
T Consensus 68 ~lq~wT~r~~~l~kLR~~~~a~~EL~~f~~lD~pdl~Yey~p~iyp~rrGSmVPFsmR~lhAe~~~~lgnpqesLdRl~~ 147 (366)
T KOG2796|consen 68 SLQLWTVRLALLVKLRLFQNAEMELEPFGNLDQPDLYYEYYPHVYPGRRGSMVPFSMRILHAELQQYLGNPQESLDRLHK 147 (366)
T ss_pred HHHHHHHHHHHHHHHhhhHHHHhhhhhhccCCCcceeeeeccccCCCCcCccccHHHHHHHHHHHHhcCCcHHHHHHHHH
Confidence 34566667777888888888887777665543221 1 1234456666778888877765554
Q ss_pred HHhh------------CCC-ChHHHH-HHHHHHHhhhcccccccccchhhhhHHHhcCCHHHHHHHHHHHHhcC-CCCHH
Q 012143 226 LILK------------DQN-HPAALI-NYAALLLCKYGSVLAGAGANTGEGACLDQASAVNVAKECLLAALKAD-PKAAH 290 (470)
Q Consensus 226 ~l~~------------~p~-~~~~~~-~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~-p~~~~ 290 (470)
.... .|. ....|. .++.+.. .+..++...|.|.-....+.+.++.+ |..+.
T Consensus 148 L~~~V~~ii~~~e~~~~~ESsv~lW~KRl~~Vmy--------------~~~~~llG~kEy~iS~d~~~~vi~~~~e~~p~ 213 (366)
T KOG2796|consen 148 LKTVVSKILANLEQGLAEESSIRLWRKRLGRVMY--------------SMANCLLGMKEYVLSVDAYHSVIKYYPEQEPQ 213 (366)
T ss_pred HHHHHHHHHHHHHhccchhhHHHHHHHHHHHHHH--------------HHHHHHhcchhhhhhHHHHHHHHHhCCcccHH
Confidence 4321 111 111111 1111111 12344445677777777777777776 44666
Q ss_pred HHHHHHHHHHHcCChhHHHHHHHHHHhcCCCcccHHHHHHHHHHHHhhhccCchHHhhhhHHHHHHHhhcCCCCCCCcHH
Q 012143 291 IWANLANAYYLTGDHRSSGKCLEKAAKLEPNCMSTRYAVAVSRIKDAERSQEPTEQLSWAGNEMASILREGDPVQIEPPI 370 (470)
Q Consensus 291 ~~~~la~~~~~~g~~~~A~~~~~~a~~~~p~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 370 (470)
....+|.+..+.|+.+.|..+|+++-+.... +... ...-.
T Consensus 214 L~s~Lgr~~MQ~GD~k~a~~yf~~vek~~~k------------------------------------L~~~----q~~~~ 253 (366)
T KOG2796|consen 214 LLSGLGRISMQIGDIKTAEKYFQDVEKVTQK------------------------------------LDGL----QGKIM 253 (366)
T ss_pred HHHHHHHHHHhcccHHHHHHHHHHHHHHHhh------------------------------------hhcc----chhHH
Confidence 7777777777777777777777765421111 0010 02223
Q ss_pred HHHHHHHHHhccccHHHHHHHHHHHhc--chhhhhHhhHHHHHHHhccHHHHHHHHHHHHhcCCCc
Q 012143 371 AWAGFAAVQKTHHEVAAAFETEENELS--KMEECAGAGESAFLDQASAVNVAKECLLAALKADPKA 434 (470)
Q Consensus 371 ~~~~l~~~~~~~~~~~~A~~~~~~~~~--~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~p~~ 434 (470)
+..+.+.++..++++..|...+.+.+. +.++.+-.+.|.|+...|+..+|++..+.++++.|..
T Consensus 254 V~~n~a~i~lg~nn~a~a~r~~~~i~~~D~~~~~a~NnKALcllYlg~l~DAiK~~e~~~~~~P~~ 319 (366)
T KOG2796|consen 254 VLMNSAFLHLGQNNFAEAHRFFTEILRMDPRNAVANNNKALCLLYLGKLKDALKQLEAMVQQDPRH 319 (366)
T ss_pred HHhhhhhheecccchHHHHHHHhhccccCCCchhhhchHHHHHHHHHHHHHHHHHHHHHhccCCcc
Confidence 455556666666677777666665333 4444445566666666777777777777777766653
|
|
| >KOG2610 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=98.28 E-value=0.00023 Score=60.46 Aligned_cols=153 Identities=8% Similarity=-0.010 Sum_probs=124.3
Q ss_pred cCcccHHHHHHHHHHhhhcCccchHHHHHHHHHHHHcCChHHHHHHHHHHhhc-CCCC---hHHHHHHHHHHHHcCCHHH
Q 012143 143 LEPEELEEILSKLKESMQSDTRQAVVWNTLGLILLKSGRLQSSISVLSSLLAV-DPNN---CDCIGNLGIAYFQSGDMEQ 218 (470)
Q Consensus 143 ~~~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~-~~~~---~~~~~~la~~~~~~g~~~~ 218 (470)
...|++.+|-...++.++..|.+.-++..--.+++..|+...-...+++.+-. +|+- .-+.-.++..+...|-|++
T Consensus 114 ~~~g~~h~a~~~wdklL~d~PtDlla~kfsh~a~fy~G~~~~~k~ai~kIip~wn~dlp~~sYv~GmyaFgL~E~g~y~d 193 (491)
T KOG2610|consen 114 WGRGKHHEAAIEWDKLLDDYPTDLLAVKFSHDAHFYNGNQIGKKNAIEKIIPKWNADLPCYSYVHGMYAFGLEECGIYDD 193 (491)
T ss_pred hccccccHHHHHHHHHHHhCchhhhhhhhhhhHHHhccchhhhhhHHHHhccccCCCCcHHHHHHHHHHhhHHHhccchh
Confidence 35677799999999999999999988888889999999999999999998876 6655 4456677788899999999
Q ss_pred HHHHHHHHHhhCCCChHHHHHHHHHHHhhhcccccccccchhhhhHHHhcCCHHHHHHHHHHHHhcCCC----CHHHHHH
Q 012143 219 SAKCFQDLILKDQNHPAALINYAALLLCKYGSVLAGAGANTGEGACLDQASAVNVAKECLLAALKADPK----AAHIWAN 294 (470)
Q Consensus 219 A~~~~~~~l~~~p~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~p~----~~~~~~~ 294 (470)
|.+.-+++++++|.+..+....+.++. ..|++.++.++..+.-..-.. ...-|..
T Consensus 194 AEk~A~ralqiN~~D~Wa~Ha~aHVle---------------------m~~r~Keg~eFM~~ted~Wr~s~mlasHNyWH 252 (491)
T KOG2610|consen 194 AEKQADRALQINRFDCWASHAKAHVLE---------------------MNGRHKEGKEFMYKTEDDWRQSWMLASHNYWH 252 (491)
T ss_pred HHHHHHhhccCCCcchHHHHHHHHHHH---------------------hcchhhhHHHHHHhcccchhhhhHHHhhhhHH
Confidence 999999999999999988888888876 689999999887764332111 1223556
Q ss_pred HHHHHHHcCChhHHHHHHHHHH
Q 012143 295 LANAYYLTGDHRSSGKCLEKAA 316 (470)
Q Consensus 295 la~~~~~~g~~~~A~~~~~~a~ 316 (470)
-+.++..-+.|+.|++.|++-+
T Consensus 253 ~Al~~iE~aeye~aleIyD~ei 274 (491)
T KOG2610|consen 253 TALFHIEGAEYEKALEIYDREI 274 (491)
T ss_pred HHHhhhcccchhHHHHHHHHHH
Confidence 6778888899999999998754
|
|
| >PF13431 TPR_17: Tetratricopeptide repeat | Back alignment and domain information |
|---|
Probab=98.26 E-value=9.5e-07 Score=48.50 Aligned_cols=34 Identities=24% Similarity=0.198 Sum_probs=30.9
Q ss_pred HHHHHHHhCCCChhHHHHHHHHHHHhCChhHHHH
Q 012143 63 GLVHVARKMPKNAHAHFLLGLMYQRLGQPLKAVS 96 (470)
Q Consensus 63 ~~~~~l~~~p~~~~~~~~l~~~~~~~g~~~~A~~ 96 (470)
+|+++++.+|+++.+|+.+|.+|...|++++|++
T Consensus 1 ~y~kAie~~P~n~~a~~nla~~~~~~g~~~~A~~ 34 (34)
T PF13431_consen 1 CYKKAIELNPNNAEAYNNLANLYLNQGDYEEAIA 34 (34)
T ss_pred ChHHHHHHCCCCHHHHHHHHHHHHHCcCHHhhcC
Confidence 3788999999999999999999999999999863
|
|
| >KOG3616 consensus Selective LIM binding factor [Transcription] | Back alignment and domain information |
|---|
Probab=98.23 E-value=0.0027 Score=60.02 Aligned_cols=295 Identities=14% Similarity=0.108 Sum_probs=159.9
Q ss_pred HHHHHHHHHhCChhHHHHHHHHHHHHHhhhhcccchhhhHHHHHHhhhccccccccCCCccccccCcccHHHHHHHHHHh
Q 012143 79 FLLGLMYQRLGQPLKAVSSYEKAEEILLRCEADIARPELLSLVQIHHAQCLLPESSGDNSLDKELEPEELEEILSKLKES 158 (470)
Q Consensus 79 ~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~ 158 (470)
-..|.-+...|+++.|+..|-.+-.+...- .+ .+...++.+|+.+++..
T Consensus 710 e~wg~hl~~~~q~daainhfiea~~~~kai-------------ea------------------ai~akew~kai~ildni 758 (1636)
T KOG3616|consen 710 EAWGDHLEQIGQLDAAINHFIEANCLIKAI-------------EA------------------AIGAKEWKKAISILDNI 758 (1636)
T ss_pred HHHhHHHHHHHhHHHHHHHHHHhhhHHHHH-------------HH------------------HhhhhhhhhhHhHHHHh
Confidence 345777778899999999887765432110 00 23445678888877765
Q ss_pred hhcCccchHHHHHHHHHHHHcCChHHHHHHHHHHhhcCCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCChHH-H
Q 012143 159 MQSDTRQAVVWNTLGLILLKSGRLQSSISVLSSLLAVDPNNCDCIGNLGIAYFQSGDMEQSAKCFQDLILKDQNHPAA-L 237 (470)
Q Consensus 159 ~~~~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~-~ 237 (470)
-.... ....|-.++.-|...|+|+-|.+.|.++ .....-...|.+.|+|.+|.+.-+++.. |..... +
T Consensus 759 qdqk~-~s~yy~~iadhyan~~dfe~ae~lf~e~--------~~~~dai~my~k~~kw~da~kla~e~~~--~e~t~~~y 827 (1636)
T KOG3616|consen 759 QDQKT-ASGYYGEIADHYANKGDFEIAEELFTEA--------DLFKDAIDMYGKAGKWEDAFKLAEECHG--PEATISLY 827 (1636)
T ss_pred hhhcc-ccccchHHHHHhccchhHHHHHHHHHhc--------chhHHHHHHHhccccHHHHHHHHHHhcC--chhHHHHH
Confidence 44332 2334556788888889999998888764 2233344567788888888887777643 333222 1
Q ss_pred HHHHHHHHhhhcccccccccchhhhhHHHhcCCHHHHHHHHHHHH----------hcCCC-CHHHHHHHHHHHHHcCChh
Q 012143 238 INYAALLLCKYGSVLAGAGANTGEGACLDQASAVNVAKECLLAAL----------KADPK-AAHIWANLANAYYLTGDHR 306 (470)
Q Consensus 238 ~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~----------~~~p~-~~~~~~~la~~~~~~g~~~ 306 (470)
...+.-+-. -+.+...-.+|...|.++.|+..|.+.- +..|+ -.+.+..+|.-+...|+.+
T Consensus 828 iakaedlde--------hgkf~eaeqlyiti~~p~~aiqmydk~~~~ddmirlv~k~h~d~l~dt~~~f~~e~e~~g~lk 899 (1636)
T KOG3616|consen 828 IAKAEDLDE--------HGKFAEAEQLYITIGEPDKAIQMYDKHGLDDDMIRLVEKHHGDHLHDTHKHFAKELEAEGDLK 899 (1636)
T ss_pred HHhHHhHHh--------hcchhhhhheeEEccCchHHHHHHHhhCcchHHHHHHHHhChhhhhHHHHHHHHHHHhccChh
Confidence 122221111 1111111223344566666666665431 12333 3467788888899999999
Q ss_pred HHHHHHHHHHhcCCCcccHHHHHHHHHHHHhhhc--------cCchHHhhhh----HHHHHHHhhcCCCCCCCcHHHHHH
Q 012143 307 SSGKCLEKAAKLEPNCMSTRYAVAVSRIKDAERS--------QEPTEQLSWA----GNEMASILREGDPVQIEPPIAWAG 374 (470)
Q Consensus 307 ~A~~~~~~a~~~~p~~~~~~~~l~~~~~~~~~~~--------~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~ 374 (470)
.|...|-++-..... .....+.....++.+. .+..-.+.|+ .....+.+... -....
T Consensus 900 aae~~flea~d~kaa---vnmyk~s~lw~dayriaktegg~n~~k~v~flwaksiggdaavkllnk~--------gll~~ 968 (1636)
T KOG3616|consen 900 AAEEHFLEAGDFKAA---VNMYKASELWEDAYRIAKTEGGANAEKHVAFLWAKSIGGDAAVKLLNKH--------GLLEA 968 (1636)
T ss_pred HHHHHHHhhhhHHHH---HHHhhhhhhHHHHHHHHhccccccHHHHHHHHHHHhhCcHHHHHHHHhh--------hhHHH
Confidence 998888665332110 0000000011111000 0000001110 00001111100 00111
Q ss_pred HHHHHhccccHHHHHHHHHHHhcchhhhhHhhHHHHHHHhccHHHHHHHHHHHHhcCCCc
Q 012143 375 FAAVQKTHHEVAAAFETEENELSKMEECAGAGESAFLDQASAVNVAKECLLAALKADPKA 434 (470)
Q Consensus 375 l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~p~~ 434 (470)
-.......+-++-|...-+-.....-...+..++..+...|++++|.+.|-.+++++.-+
T Consensus 969 ~id~a~d~~afd~afdlari~~k~k~~~vhlk~a~~ledegk~edaskhyveaiklntyn 1028 (1636)
T KOG3616|consen 969 AIDFAADNCAFDFAFDLARIAAKDKMGEVHLKLAMFLEDEGKFEDASKHYVEAIKLNTYN 1028 (1636)
T ss_pred HhhhhhcccchhhHHHHHHHhhhccCccchhHHhhhhhhccchhhhhHhhHHHhhccccc
Confidence 111223445566666666666666777788888889999999999999999999987544
|
|
| >KOG3616 consensus Selective LIM binding factor [Transcription] | Back alignment and domain information |
|---|
Probab=98.21 E-value=0.002 Score=60.80 Aligned_cols=239 Identities=12% Similarity=0.064 Sum_probs=115.6
Q ss_pred HHHHHcCCHHHHHHHHHHHHhhCCCChHHHHHHHHHHHhhhcccccccccchhhhhHHHhcCCHHHHHHHHHH------H
Q 012143 208 IAYFQSGDMEQSAKCFQDLILKDQNHPAALINYAALLLCKYGSVLAGAGANTGEGACLDQASAVNVAKECLLA------A 281 (470)
Q Consensus 208 ~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~------~ 281 (470)
.+|.+.|.+-+|......--.+. .+......++..+.. ...+-..|.++.+..++++|+++|++ +
T Consensus 623 qlyika~~p~~a~~~a~n~~~l~-~de~il~~ia~alik--------~elydkagdlfeki~d~dkale~fkkgdaf~ka 693 (1636)
T KOG3616|consen 623 QLYIKAGKPAKAARAALNDEELL-ADEEILEHIAAALIK--------GELYDKAGDLFEKIHDFDKALECFKKGDAFGKA 693 (1636)
T ss_pred HHHHHcCCchHHHHhhcCHHHhh-ccHHHHHHHHHHHHh--------hHHHHhhhhHHHHhhCHHHHHHHHHcccHHHHH
Confidence 45667777766654332111111 122333333333321 22333457888889999999999875 3
Q ss_pred Hhc----CCCC-HHHHHHHHHHHHHcCChhHHHHHHHHHHhcCCCcccHH----HHHHHHHHHHhhhc---cCchHHhhh
Q 012143 282 LKA----DPKA-AHIWANLANAYYLTGDHRSSGKCLEKAAKLEPNCMSTR----YAVAVSRIKDAERS---QEPTEQLSW 349 (470)
Q Consensus 282 ~~~----~p~~-~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~p~~~~~~----~~l~~~~~~~~~~~---~~~~~~~~~ 349 (470)
+++ .|.. ...-..-|.-+...|+++.|+..|-.+-..-..-..+. +..++..+...... .........
T Consensus 694 ielarfafp~evv~lee~wg~hl~~~~q~daainhfiea~~~~kaieaai~akew~kai~ildniqdqk~~s~yy~~iad 773 (1636)
T KOG3616|consen 694 IELARFAFPEEVVKLEEAWGDHLEQIGQLDAAINHFIEANCLIKAIEAAIGAKEWKKAISILDNIQDQKTASGYYGEIAD 773 (1636)
T ss_pred HHHHHhhCcHHHhhHHHHHhHHHHHHHhHHHHHHHHHHhhhHHHHHHHHhhhhhhhhhHhHHHHhhhhccccccchHHHH
Confidence 333 2332 12223346677788899998888865432211000000 00011001000000 000000000
Q ss_pred ------hHHHHHHHhhcCCCCCCCcHHHHHHHHHHHhccccHHHHHHHHHHHhcchhhhh-HhhHHHHHHHhccH-----
Q 012143 350 ------AGNEMASILREGDPVQIEPPIAWAGFAAVQKTHHEVAAAFETEENELSKMEECA-GAGESAFLDQASAV----- 417 (470)
Q Consensus 350 ------~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~-~~~l~~~~~~~~~~----- 417 (470)
-++.....+.+. .........|.+.|++..|.+.-.+...|..... +...+.-+-..|+|
T Consensus 774 hyan~~dfe~ae~lf~e~--------~~~~dai~my~k~~kw~da~kla~e~~~~e~t~~~yiakaedldehgkf~eaeq 845 (1636)
T KOG3616|consen 774 HYANKGDFEIAEELFTEA--------DLFKDAIDMYGKAGKWEDAFKLAEECHGPEATISLYIAKAEDLDEHGKFAEAEQ 845 (1636)
T ss_pred HhccchhHHHHHHHHHhc--------chhHHHHHHHhccccHHHHHHHHHHhcCchhHHHHHHHhHHhHHhhcchhhhhh
Confidence 011111111111 1233344566777777777777666555544422 33444444455554
Q ss_pred --------HHHHHHHHHHH------h----cCCCc-HHHHHHHHHHHHHcCChHHHHHHHHHHHH
Q 012143 418 --------NVAKECLLAAL------K----ADPKA-AHIWANLANAYYLTGDHRSSGKCLEKVLM 463 (470)
Q Consensus 418 --------~~A~~~~~~al------~----~~p~~-~~~~~~la~~~~~~g~~~~A~~~~~~al~ 463 (470)
+.|+.+|.+.- . ..|+. .+.+..+|.-+...|+.+.|...|-++-+
T Consensus 846 lyiti~~p~~aiqmydk~~~~ddmirlv~k~h~d~l~dt~~~f~~e~e~~g~lkaae~~flea~d 910 (1636)
T KOG3616|consen 846 LYITIGEPDKAIQMYDKHGLDDDMIRLVEKHHGDHLHDTHKHFAKELEAEGDLKAAEEHFLEAGD 910 (1636)
T ss_pred eeEEccCchHHHHHHHhhCcchHHHHHHHHhChhhhhHHHHHHHHHHHhccChhHHHHHHHhhhh
Confidence 45555554321 1 23333 46778889999999999999888766543
|
|
| >KOG0376 consensus Serine-threonine phosphatase 2A, catalytic subunit [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.17 E-value=2.4e-06 Score=75.95 Aligned_cols=104 Identities=13% Similarity=0.167 Sum_probs=97.5
Q ss_pred ccCcccHHHHHHHHHHhhhcCccchHHHHHHHHHHHHcCChHHHHHHHHHHhhcCCCChHHHHHHHHHHHHcCCHHHHHH
Q 012143 142 ELEPEELEEILSKLKESMQSDTRQAVVWNTLGLILLKSGRLQSSISVLSSLLAVDPNNCDCIGNLGIAYFQSGDMEQSAK 221 (470)
Q Consensus 142 ~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~la~~~~~~g~~~~A~~ 221 (470)
.+..+.|+.|+..|.++++++|+.+..+-+.+.++.+.+++..|+..+.++++.+|....+|+..|.+....+.+.+|..
T Consensus 14 ~l~~~~fd~avdlysKaI~ldpnca~~~anRa~a~lK~e~~~~Al~Da~kaie~dP~~~K~Y~rrg~a~m~l~~~~~A~~ 93 (476)
T KOG0376|consen 14 ALKDKVFDVAVDLYSKAIELDPNCAIYFANRALAHLKVESFGGALHDALKAIELDPTYIKAYVRRGTAVMALGEFKKALL 93 (476)
T ss_pred hcccchHHHHHHHHHHHHhcCCcceeeechhhhhheeechhhhHHHHHHhhhhcCchhhheeeeccHHHHhHHHHHHHHH
Confidence 56788999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHhhCCCChHHHHHHHHHHH
Q 012143 222 CFQDLILKDQNHPAALINYAALLL 245 (470)
Q Consensus 222 ~~~~~l~~~p~~~~~~~~l~~~~~ 245 (470)
.|+....+.|+++.+...+..+-.
T Consensus 94 ~l~~~~~l~Pnd~~~~r~~~Ec~~ 117 (476)
T KOG0376|consen 94 DLEKVKKLAPNDPDATRKIDECNK 117 (476)
T ss_pred HHHHhhhcCcCcHHHHHHHHHHHH
Confidence 999999999999988776655543
|
|
| >KOG0545 consensus Aryl-hydrocarbon receptor-interacting protein [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=98.16 E-value=0.00011 Score=59.39 Aligned_cols=126 Identities=19% Similarity=0.127 Sum_probs=92.4
Q ss_pred hhHHHHHHHHHHHhCChhHHHHHHHHHHHHHhhhhcccchhhhHHHHHHhhhccccccccCCCccccccCcccHHHHHHH
Q 012143 75 AHAHFLLGLMYQRLGQPLKAVSSYEKAEEILLRCEADIARPELLSLVQIHHAQCLLPESSGDNSLDKELEPEELEEILSK 154 (470)
Q Consensus 75 ~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~ 154 (470)
..++...|+-++..|+|.+|...|+.|+....+-. .-. +.|+.
T Consensus 178 v~~l~q~GN~lfk~~~ykEA~~~YreAi~~l~~L~--------------------lkE-----------kP~e~------ 220 (329)
T KOG0545|consen 178 VPVLHQEGNRLFKLGRYKEASSKYREAIICLRNLQ--------------------LKE-----------KPGEP------ 220 (329)
T ss_pred hHHHHHhhhhhhhhccHHHHHHHHHHHHHHHHHHH--------------------hcc-----------CCCCh------
Confidence 34666778888888888888888888776421100 000 00000
Q ss_pred HHHhhhcCccchHHHHHHHHHHHHcCChHHHHHHHHHHhhcCCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCh
Q 012143 155 LKESMQSDTRQAVVWNTLGLILLKSGRLQSSISVLSSLLAVDPNNCDCIGNLGIAYFQSGDMEQSAKCFQDLILKDQNHP 234 (470)
Q Consensus 155 ~~~~~~~~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~ 234 (470)
+.++++......+.+.+.|+...|+|-++++.....+..+|.+..+++..|.+....-+..+|...|.++++++|.-.
T Consensus 221 --eW~eLdk~~tpLllNy~QC~L~~~e~yevleh~seiL~~~~~nvKA~frRakAhaa~Wn~~eA~~D~~~vL~ldpsla 298 (329)
T KOG0545|consen 221 --EWLELDKMITPLLLNYCQCLLKKEEYYEVLEHCSEILRHHPGNVKAYFRRAKAHAAVWNEAEAKADLQKVLELDPSLA 298 (329)
T ss_pred --HHHHHHHhhhHHHHhHHHHHhhHHHHHHHHHHHHHHHhcCCchHHHHHHHHHHHHhhcCHHHHHHHHHHHHhcChhhH
Confidence 112222233557888999999999999999999999999999999999999999999999999999999999999776
Q ss_pred HHHHH
Q 012143 235 AALIN 239 (470)
Q Consensus 235 ~~~~~ 239 (470)
.+...
T Consensus 299 svVsr 303 (329)
T KOG0545|consen 299 SVVSR 303 (329)
T ss_pred HHHHH
Confidence 65443
|
|
| >KOG1585 consensus Protein required for fusion of vesicles in vesicular transport, gamma-SNAP [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=98.14 E-value=0.0014 Score=53.31 Aligned_cols=87 Identities=17% Similarity=0.076 Sum_probs=49.0
Q ss_pred HHHHHHHHHhccccHHHHHHHHHHHhc--------chhhhhHhhHHHHHHHhccHHHHHHHHHHHHhc----CCCcHHHH
Q 012143 371 AWAGFAAVQKTHHEVAAAFETEENELS--------KMEECAGAGESAFLDQASAVNVAKECLLAALKA----DPKAAHIW 438 (470)
Q Consensus 371 ~~~~l~~~~~~~~~~~~A~~~~~~~~~--------~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~----~p~~~~~~ 438 (470)
.+...+.++.+..++.+|-..+.+... +.+...+.....++....+|..|..+++..-++ .|++..+.
T Consensus 152 l~gk~sr~lVrl~kf~Eaa~a~lKe~~~~~~~~~y~~~~k~~va~ilv~L~~~Dyv~aekc~r~~~qip~f~~sed~r~l 231 (308)
T KOG1585|consen 152 LYGKCSRVLVRLEKFTEAATAFLKEGVAADKCDAYNSQCKAYVAAILVYLYAHDYVQAEKCYRDCSQIPAFLKSEDSRSL 231 (308)
T ss_pred HHHHhhhHhhhhHHhhHHHHHHHHhhhHHHHHhhcccHHHHHHHHHHHHhhHHHHHHHHHHhcchhcCccccChHHHHHH
Confidence 344455566666666666666555222 122233444444566667888888888876654 34445555
Q ss_pred HHHHHHHHHcCChHHHHHHH
Q 012143 439 ANLANAYYLTGDHRSSGKCL 458 (470)
Q Consensus 439 ~~la~~~~~~g~~~~A~~~~ 458 (470)
.+|-.. +..||.++..+.+
T Consensus 232 enLL~a-yd~gD~E~~~kvl 250 (308)
T KOG1585|consen 232 ENLLTA-YDEGDIEEIKKVL 250 (308)
T ss_pred HHHHHH-hccCCHHHHHHHH
Confidence 555554 3456666655543
|
|
| >PF08631 SPO22: Meiosis protein SPO22/ZIP4 like; InterPro: IPR013940 SPO22 is a meiosis-specific protein with similarity to phospholipase A2, involved in completion of nuclear divisions during meiosis; induced early in meiosis [] | Back alignment and domain information |
|---|
Probab=98.14 E-value=0.0038 Score=54.49 Aligned_cols=247 Identities=15% Similarity=0.078 Sum_probs=146.4
Q ss_pred hhhhcChhhHHHHHHHHHHhC----CCC----hhHHHHHHHHHHHhC-ChhHHHHHHHHHHHHHhh-hhcccchhhh-HH
Q 012143 51 SSREEKVSSLKTGLVHVARKM----PKN----AHAHFLLGLMYQRLG-QPLKAVSSYEKAEEILLR-CEADIARPEL-LS 119 (470)
Q Consensus 51 ~~~~~~~~~A~~~~~~~l~~~----p~~----~~~~~~l~~~~~~~g-~~~~A~~~~~~al~~~~~-~~~~~~~~~~-~~ 119 (470)
...+|+++.|...+.++-... |+. ...++..|......+ +++.|..+++++.++... .......++. --
T Consensus 3 A~~~~~~~~A~~~~~K~~~~~~~~~~~~~~~La~~~yn~G~~l~~~~~~~~~a~~wL~~a~~~l~~~~~~~~~~~~~~el 82 (278)
T PF08631_consen 3 AWKQGDLDLAEHMYSKAKDLLNSLDPDMAEELARVCYNIGKSLLSKKDKYEEAVKWLQRAYDILEKPGKMDKLSPDGSEL 82 (278)
T ss_pred chhhCCHHHHHHHHHHhhhHHhcCCcHHHHHHHHHHHHHHHHHHHcCCChHHHHHHHHHHHHHHHhhhhccccCCcHHHH
Confidence 467899999999999986544 333 236677888888889 999999999999998544 2222222222 12
Q ss_pred HHHHhhhccccccccCCCccccccCcccHHHHHHHHHHhhhcCccchHHHHHHHHHHHHcCChHHHHHHHHHHhhcCC-C
Q 012143 120 LVQIHHAQCLLPESSGDNSLDKELEPEELEEILSKLKESMQSDTRQAVVWNTLGLILLKSGRLQSSISVLSSLLAVDP-N 198 (470)
Q Consensus 120 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~-~ 198 (470)
...+...++.++...+.. ...++|...++.+-...|+.+..+...-.+....++.+.+.+.+.+++..-+ .
T Consensus 83 r~~iL~~La~~~l~~~~~--------~~~~ka~~~l~~l~~e~~~~~~~~~L~l~il~~~~~~~~~~~~L~~mi~~~~~~ 154 (278)
T PF08631_consen 83 RLSILRLLANAYLEWDTY--------ESVEKALNALRLLESEYGNKPEVFLLKLEILLKSFDEEEYEEILMRMIRSVDHS 154 (278)
T ss_pred HHHHHHHHHHHHHcCCCh--------HHHHHHHHHHHHHHHhCCCCcHHHHHHHHHHhccCChhHHHHHHHHHHHhcccc
Confidence 234555566655444432 4566788888888888898888886666666668999999999999987644 1
Q ss_pred ChHHHHHHHHH-HHHcCCHHHHHHHHHHHHhh--CCCChHHHHHHHHHHHhhhcccccccccchhhhhHHHhcCCHHHHH
Q 012143 199 NCDCIGNLGIA-YFQSGDMEQSAKCFQDLILK--DQNHPAALINYAALLLCKYGSVLAGAGANTGEGACLDQASAVNVAK 275 (470)
Q Consensus 199 ~~~~~~~la~~-~~~~g~~~~A~~~~~~~l~~--~p~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~ 275 (470)
....-..+..+ .........|...+...+.. .|.... +.....+........ ..-....++.+...
T Consensus 155 e~~~~~~l~~i~~l~~~~~~~a~~~ld~~l~~r~~~~~~~-~~e~~vl~~~~~~~~----------~~~~~~~~~i~~l~ 223 (278)
T PF08631_consen 155 ESNFDSILHHIKQLAEKSPELAAFCLDYLLLNRFKSSEDQ-WLEKLVLTRVLLTTQ----------SKDLSSSEKIESLE 223 (278)
T ss_pred cchHHHHHHHHHHHHhhCcHHHHHHHHHHHHHHhCCChhH-HHHHHHHHHHHHHcC----------CccccchhHHHHHH
Confidence 12221212222 12234456777777777743 333322 333332222100000 00000011133333
Q ss_pred HHHHHHHhc--CCCCH-------HHHHHHHHHHHHcCChhHHHHHHHHHH
Q 012143 276 ECLLAALKA--DPKAA-------HIWANLANAYYLTGDHRSSGKCLEKAA 316 (470)
Q Consensus 276 ~~~~~~~~~--~p~~~-------~~~~~la~~~~~~g~~~~A~~~~~~a~ 316 (470)
.++....+. .|-.+ ....+.|...++.++|++|..+|+-++
T Consensus 224 ~~~~~v~~~~~~~ls~~~~~a~~~LLW~~~~~~~~~k~y~~A~~w~~~al 273 (278)
T PF08631_consen 224 ELLSIVEHSLGKQLSAEAASAIHTLLWNKGKKHYKAKNYDEAIEWYELAL 273 (278)
T ss_pred HHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHHHHhhcCHHHHHHHHHHHH
Confidence 333322211 12222 345667888999999999999999766
|
It is also involved in sporulation []. |
| >KOG1585 consensus Protein required for fusion of vesicles in vesicular transport, gamma-SNAP [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=98.13 E-value=0.00042 Score=56.24 Aligned_cols=194 Identities=15% Similarity=0.226 Sum_probs=129.9
Q ss_pred hcccchhhhhcChhhHHHHHHHHHHhCCCChh------HHHHHHHHHHHhCChhHHHHHHHHHHHHHhhhhcccchhhhH
Q 012143 45 GLGTSSSSREEKVSSLKTGLVHVARKMPKNAH------AHFLLGLMYQRLGQPLKAVSSYEKAEEILLRCEADIARPELL 118 (470)
Q Consensus 45 ~~~~~~~~~~~~~~~A~~~~~~~l~~~p~~~~------~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~ 118 (470)
.-+.. +....++++|..++.++.+-..+|.. ++-..|.+......+.++..+|+++..+...... |+..
T Consensus 36 kAAva-fRnAk~feKakdcLlkA~~~yEnnrslfhAAKayEqaamLake~~klsEvvdl~eKAs~lY~E~Gs----pdtA 110 (308)
T KOG1585|consen 36 KAAVA-FRNAKKFEKAKDCLLKASKGYENNRSLFHAAKAYEQAAMLAKELSKLSEVVDLYEKASELYVECGS----PDTA 110 (308)
T ss_pred HHHHH-HHhhccHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHhCC----cchH
Confidence 33444 77788999999999999865554432 4445666777788899999999999887544322 1111
Q ss_pred HHHHHhhhccccccccCCCccccccCcccHHHHHHHHHHhhhcCccc------hHHHHHHHHHHHHcCChHHHHHHHHHH
Q 012143 119 SLVQIHHAQCLLPESSGDNSLDKELEPEELEEILSKLKESMQSDTRQ------AVVWNTLGLILLKSGRLQSSISVLSSL 192 (470)
Q Consensus 119 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~p~~------~~~~~~l~~~~~~~~~~~~A~~~~~~a 192 (470)
. .+.-.-+. .++.-++++|+.+|++++..-..+ .+.+...+.++.+..++.+|-..+.+-
T Consensus 111 A--maleKAak------------~lenv~Pd~AlqlYqralavve~~dr~~ma~el~gk~sr~lVrl~kf~Eaa~a~lKe 176 (308)
T KOG1585|consen 111 A--MALEKAAK------------ALENVKPDDALQLYQRALAVVEEDDRDQMAFELYGKCSRVLVRLEKFTEAATAFLKE 176 (308)
T ss_pred H--HHHHHHHH------------HhhcCCHHHHHHHHHHHHHHHhccchHHHHHHHHHHhhhHhhhhHHhhHHHHHHHHh
Confidence 1 11111111 356778899999999997754322 345666788899999999998888775
Q ss_pred hhc------CCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHhh----CCCChHHHHHHHHHHHhhhcccccccccchhhh
Q 012143 193 LAV------DPNNCDCIGNLGIAYFQSGDMEQSAKCFQDLILK----DQNHPAALINYAALLLCKYGSVLAGAGANTGEG 262 (470)
Q Consensus 193 ~~~------~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~----~p~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~ 262 (470)
... .|+....+.....+|....+|..|..+++..-++ .|++..+..+|...|
T Consensus 177 ~~~~~~~~~y~~~~k~~va~ilv~L~~~Dyv~aekc~r~~~qip~f~~sed~r~lenLL~ay------------------ 238 (308)
T KOG1585|consen 177 GVAADKCDAYNSQCKAYVAAILVYLYAHDYVQAEKCYRDCSQIPAFLKSEDSRSLENLLTAY------------------ 238 (308)
T ss_pred hhHHHHHhhcccHHHHHHHHHHHHhhHHHHHHHHHHhcchhcCccccChHHHHHHHHHHHHh------------------
Confidence 432 2333445666667777778999999999987654 344555555555555
Q ss_pred hHHHhcCCHHHHHHHHH
Q 012143 263 ACLDQASAVNVAKECLL 279 (470)
Q Consensus 263 ~~~~~~~~~~~A~~~~~ 279 (470)
..|+.++..+++.
T Consensus 239 ----d~gD~E~~~kvl~ 251 (308)
T KOG1585|consen 239 ----DEGDIEEIKKVLS 251 (308)
T ss_pred ----ccCCHHHHHHHHc
Confidence 4777777766655
|
|
| >KOG1550 consensus Extracellular protein SEL-1 and related proteins [Cell wall/membrane/envelope biogenesis; Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=98.09 E-value=0.0041 Score=59.98 Aligned_cols=149 Identities=22% Similarity=0.148 Sum_probs=116.3
Q ss_pred cHHHHHHHHHHhhhcCccchHHHHHHHHHHHHc-----CChHHHHHHHHHHhhc-----CCCChHHHHHHHHHHHHcC--
Q 012143 147 ELEEILSKLKESMQSDTRQAVVWNTLGLILLKS-----GRLQSSISVLSSLLAV-----DPNNCDCIGNLGIAYFQSG-- 214 (470)
Q Consensus 147 ~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~-----~~~~~A~~~~~~a~~~-----~~~~~~~~~~la~~~~~~g-- 214 (470)
+...|..+++.+... .+..+...+|.+|..- .+.+.|+.+|+.+... ....+.+...+|.+|.+..
T Consensus 227 ~~~~a~~~~~~~a~~--g~~~a~~~~g~~y~~G~~g~~~d~e~a~~~l~~aa~~~~~~a~~~~~~a~~~lg~~Y~~g~~~ 304 (552)
T KOG1550|consen 227 ELSEAFKYYREAAKL--GHSEAQYALGICYLAGTYGVTQDLESAIEYLKLAAESFKKAATKGLPPAQYGLGRLYLQGLGV 304 (552)
T ss_pred hhhHHHHHHHHHHhh--cchHHHHHHHHHHhhccccccccHHHHHHHHHHHHHHHHHHHhhcCCccccHHHHHHhcCCCC
Confidence 457888888887765 4567778888887764 6899999999999771 1225668899999998843
Q ss_pred ---CHHHHHHHHHHHHhhCCCChHHHHHHHHHHHhhhcccccccccchhhhhHHHhcCCHHHHHHHHHHHHhcCCCCHHH
Q 012143 215 ---DMEQSAKCFQDLILKDQNHPAALINYAALLLCKYGSVLAGAGANTGEGACLDQASAVNVAKECLLAALKADPKAAHI 291 (470)
Q Consensus 215 ---~~~~A~~~~~~~l~~~p~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~ 291 (470)
+...|+.+|.++-... ++.+.+.+|.++... . ...++..|.++|..+... .+..+
T Consensus 305 ~~~d~~~A~~~~~~aA~~g--~~~a~~~lg~~~~~g---------------~---~~~d~~~A~~yy~~Aa~~--G~~~A 362 (552)
T KOG1550|consen 305 EKIDYEKALKLYTKAAELG--NPDAQYLLGVLYETG---------------T---KERDYRRAFEYYSLAAKA--GHILA 362 (552)
T ss_pred ccccHHHHHHHHHHHHhcC--CchHHHHHHHHHHcC---------------C---ccccHHHHHHHHHHHHHc--CChHH
Confidence 7788999999998754 567788889888741 1 235688999999999864 45788
Q ss_pred HHHHHHHHHHc----CChhHHHHHHHHHHhcC
Q 012143 292 WANLANAYYLT----GDHRSSGKCLEKAAKLE 319 (470)
Q Consensus 292 ~~~la~~~~~~----g~~~~A~~~~~~a~~~~ 319 (470)
.+.++.+|..- .+...|..+++++.+..
T Consensus 363 ~~~la~~y~~G~gv~r~~~~A~~~~k~aA~~g 394 (552)
T KOG1550|consen 363 IYRLALCYELGLGVERNLELAFAYYKKAAEKG 394 (552)
T ss_pred HHHHHHHHHhCCCcCCCHHHHHHHHHHHHHcc
Confidence 89999888753 47889999999999887
|
|
| >PF04184 ST7: ST7 protein; InterPro: IPR007311 The ST7 (for suppression of tumorigenicity 7) protein is thought to be a tumour suppressor gene | Back alignment and domain information |
|---|
Probab=98.09 E-value=0.00024 Score=64.01 Aligned_cols=159 Identities=16% Similarity=0.158 Sum_probs=116.0
Q ss_pred CcccHHHHHHHHHHhhhcCccchHHHHHHHHHHHHcCChHHHHHHHHHHhhcCCC---------------------C---
Q 012143 144 EPEELEEILSKLKESMQSDTRQAVVWNTLGLILLKSGRLQSSISVLSSLLAVDPN---------------------N--- 199 (470)
Q Consensus 144 ~~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~---------------------~--- 199 (470)
+..+...-++..+++++++|+.+.+|..++.- ......+|..+|+++++.... +
T Consensus 180 RERnp~aRIkaA~eALei~pdCAdAYILLAEE--eA~Ti~Eae~l~rqAvkAgE~~lg~s~~~~~~g~~~e~~~~Rdt~~ 257 (539)
T PF04184_consen 180 RERNPQARIKAAKEALEINPDCADAYILLAEE--EASTIVEAEELLRQAVKAGEASLGKSQFLQHHGHFWEAWHRRDTNV 257 (539)
T ss_pred hcCCHHHHHHHHHHHHHhhhhhhHHHhhcccc--cccCHHHHHHHHHHHHHHHHHhhchhhhhhcccchhhhhhccccch
Confidence 56778888999999999999999999888753 233467778888877764110 0
Q ss_pred -hHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCC--ChHHHHHHHHHHHhhhcccccccccchhhhhHHHhcCCHHHHHH
Q 012143 200 -CDCIGNLGIAYFQSGDMEQSAKCFQDLILKDQN--HPAALINYAALLLCKYGSVLAGAGANTGEGACLDQASAVNVAKE 276 (470)
Q Consensus 200 -~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~--~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~ 276 (470)
..+...+|.|..++|+.++|++.++..++..|. +...+.++...+. ..+.|.++..
T Consensus 258 ~~y~KrRLAmCarklGr~~EAIk~~rdLlke~p~~~~l~IrenLie~LL---------------------elq~Yad~q~ 316 (539)
T PF04184_consen 258 LVYAKRRLAMCARKLGRLREAIKMFRDLLKEFPNLDNLNIRENLIEALL---------------------ELQAYADVQA 316 (539)
T ss_pred hhhhHHHHHHHHHHhCChHHHHHHHHHHHhhCCccchhhHHHHHHHHHH---------------------hcCCHHHHHH
Confidence 235678999999999999999999999988775 4456677777776 6888999988
Q ss_pred HHHHHHhc-CCCCHHHHHHHHHHHHHc-CC---------------hhHHHHHHHHHHhcCCCcccH
Q 012143 277 CLLAALKA-DPKAAHIWANLANAYYLT-GD---------------HRSSGKCLEKAAKLEPNCMST 325 (470)
Q Consensus 277 ~~~~~~~~-~p~~~~~~~~la~~~~~~-g~---------------~~~A~~~~~~a~~~~p~~~~~ 325 (470)
.+.+--++ -|+.+...+.-+.+-.+. ++ -..|++.+.+|++.+|.-+..
T Consensus 317 lL~kYdDi~lpkSAti~YTaALLkaRav~d~fs~e~a~rRGls~ae~~aveAi~RAvefNPHVp~Y 382 (539)
T PF04184_consen 317 LLAKYDDISLPKSATICYTAALLKARAVGDKFSPEAASRRGLSPAEMNAVEAIHRAVEFNPHVPKY 382 (539)
T ss_pred HHHHhccccCCchHHHHHHHHHHHHHhhccccCchhhhhcCCChhHHHHHHHHHHHHHhCCCCchh
Confidence 88885443 355666666655544331 11 134778899999999986653
|
The molecular function of this protein is uncertain. |
| >PF05843 Suf: Suppressor of forked protein (Suf); InterPro: IPR008847 This domain consists of several eukaryotic suppressor of forked (Suf) like proteins | Back alignment and domain information |
|---|
Probab=98.08 E-value=0.00014 Score=63.42 Aligned_cols=127 Identities=10% Similarity=0.062 Sum_probs=100.7
Q ss_pred CcccHHHHHHHHHHhhhcCccchHHHHHHHHHHHH-cCChHHHHHHHHHHhhcCCCChHHHHHHHHHHHHcCCHHHHHHH
Q 012143 144 EPEELEEILSKLKESMQSDTRQAVVWNTLGLILLK-SGRLQSSISVLSSLLAVDPNNCDCIGNLGIAYFQSGDMEQSAKC 222 (470)
Q Consensus 144 ~~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~-~~~~~~A~~~~~~a~~~~~~~~~~~~~la~~~~~~g~~~~A~~~ 222 (470)
+.+..+.|..+|.++....+....+|...|.+... .++.+.|..+|+.+++..|.+...|......+...|+.+.|...
T Consensus 13 r~~g~~~aR~vF~~a~~~~~~~~~vy~~~A~~E~~~~~d~~~A~~Ife~glk~f~~~~~~~~~Y~~~l~~~~d~~~aR~l 92 (280)
T PF05843_consen 13 RTEGIEAARKVFKRARKDKRCTYHVYVAYALMEYYCNKDPKRARKIFERGLKKFPSDPDFWLEYLDFLIKLNDINNARAL 92 (280)
T ss_dssp HHHHHHHHHHHHHHHHCCCCS-THHHHHHHHHHHHTCS-HHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHTT-HHHHHHH
T ss_pred HhCChHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHhCcHHHHHHH
Confidence 34557999999999997777788999999999777 56666699999999999999999999999999999999999999
Q ss_pred HHHHHhhCCCCh---HHHHHHHHHHHhhhcccccccccchhhhhHHHhcCCHHHHHHHHHHHHhcCCCCHHH
Q 012143 223 FQDLILKDQNHP---AALINYAALLLCKYGSVLAGAGANTGEGACLDQASAVNVAKECLLAALKADPKAAHI 291 (470)
Q Consensus 223 ~~~~l~~~p~~~---~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~ 291 (470)
|++++..-|... ..|......-. +.|+.+....+..++.+..|+....
T Consensus 93 fer~i~~l~~~~~~~~iw~~~i~fE~---------------------~~Gdl~~v~~v~~R~~~~~~~~~~~ 143 (280)
T PF05843_consen 93 FERAISSLPKEKQSKKIWKKFIEFES---------------------KYGDLESVRKVEKRAEELFPEDNSL 143 (280)
T ss_dssp HHHHCCTSSCHHHCHHHHHHHHHHHH---------------------HHS-HHHHHHHHHHHHHHTTTS-HH
T ss_pred HHHHHHhcCchhHHHHHHHHHHHHHH---------------------HcCCHHHHHHHHHHHHHHhhhhhHH
Confidence 999998866655 34444433333 6899999999999999998884443
|
The Drosophila melanogaster suppressor of forked [Su(f)] protein shares homology with the Saccharomyces cerevisiae RNA14 protein and the 77 kDa subunit of Homo sapiens cleavage stimulation factor, which are proteins involved in mRNA 3' end formation. This suggests a role for Su(f) in mRNA 3' end formation in Drosophila. The su(f) gene produces three transcripts; two of them are polyadenylated at the end of the transcription unit, and one is a truncated transcript, polyadenylated in intron 4. It is thought that su(f) plays a role in the regulation of poly(A) site utilisation and the GU-rich sequence is important for this regulation to occur [].; GO: 0006397 mRNA processing, 0005634 nucleus; PDB: 2L9B_B 2OND_B 2OOE_A 4E85_B 4EBA_C 4E6H_A 2UY1_B. |
| >KOG2300 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=98.04 E-value=0.009 Score=53.82 Aligned_cols=389 Identities=12% Similarity=0.011 Sum_probs=194.6
Q ss_pred hhcccchhhhhc--ChhhHHHHHHHHHHhCCCC---hhHHHHHHHHHH-HhCChhHHHHHHHHHHHHHhhhhcccchhhh
Q 012143 44 SGLGTSSSSREE--KVSSLKTGLVHVARKMPKN---AHAHFLLGLMYQ-RLGQPLKAVSSYEKAEEILLRCEADIARPEL 117 (470)
Q Consensus 44 ~~~~~~~~~~~~--~~~~A~~~~~~~l~~~p~~---~~~~~~l~~~~~-~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~ 117 (470)
..++.. +...| ++..++++++.+....|.+ +..+..+|.+++ ...+++.|...++++..+... .|.+
T Consensus 11 lGlAe~-~rt~~PPkIkk~IkClqA~~~~~is~~veart~LqLg~lL~~yT~N~elAksHLekA~~i~~~------ip~f 83 (629)
T KOG2300|consen 11 LGLAEH-FRTSGPPKIKKCIKCLQAIFQFQISFLVEARTHLQLGALLLRYTKNVELAKSHLEKAWLISKS------IPSF 83 (629)
T ss_pred HHHHHH-HhhcCChhHHHHHHHHHHHhccCChHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHcc------cccH
Confidence 344444 55566 7889999999998887765 346677777655 578999999999999987422 1211
Q ss_pred H-HHHHHhhhccccccccCCCccccccCcccHHHHHHHHHHhhhcCccch----HHHHHHHHHHHHcCChHHHHHHHHHH
Q 012143 118 L-SLVQIHHAQCLLPESSGDNSLDKELEPEELEEILSKLKESMQSDTRQA----VVWNTLGLILLKSGRLQSSISVLSSL 192 (470)
Q Consensus 118 ~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~p~~~----~~~~~l~~~~~~~~~~~~A~~~~~~a 192 (470)
. .-......++.++... ...+..+...++++++.....| ...+.++.++.-..++..|++.+.-.
T Consensus 84 ydvKf~a~SlLa~lh~~~----------~~s~~~~KalLrkaielsq~~p~wsckllfQLaql~~idkD~~sA~elLavg 153 (629)
T KOG2300|consen 84 YDVKFQAASLLAHLHHQL----------AQSFPPAKALLRKAIELSQSVPYWSCKLLFQLAQLHIIDKDFPSALELLAVG 153 (629)
T ss_pred HhhhhHHHHHHHHHHHHh----------cCCCchHHHHHHHHHHHhcCCchhhHHHHHHHHHHHhhhccchhHHHHHhcc
Confidence 1 0011111122222111 1146889999999998876665 35667899999999999999985443
Q ss_pred hhc-CCCC---hHHHHHH--HHHHHHcCCH---HHHHHHHHHHHhhCCCChHHHHHHHHHHHhhhcccccccccchhhhh
Q 012143 193 LAV-DPNN---CDCIGNL--GIAYFQSGDM---EQSAKCFQDLILKDQNHPAALINYAALLLCKYGSVLAGAGANTGEGA 263 (470)
Q Consensus 193 ~~~-~~~~---~~~~~~l--a~~~~~~g~~---~~A~~~~~~~l~~~p~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~ 263 (470)
.+. ++.. ....+.+ +.+.....+. ..+.....+.......++.-...+-..|... .-.
T Consensus 154 a~sAd~~~~~ylr~~ftls~~~ll~me~d~~dV~~ll~~~~qi~~n~~sdk~~~E~LkvFyl~l-------------ql~ 220 (629)
T KOG2300|consen 154 AESADHICFPYLRMLFTLSMLMLLIMERDDYDVEKLLQRCGQIWQNISSDKTQKEMLKVFYLVL-------------QLS 220 (629)
T ss_pred ccccchhhhHHHHHHHHHHHHHHHHhCccHHHHHHHHHHHHHHHhccCCChHHHHHHHHHHHHH-------------HHH
Confidence 322 1111 1122222 2233333333 3344444444443333332222222222110 011
Q ss_pred HHHhcCCHHHHHHHHHHH---Hhc-CCC------------CHH--HHHHH----HHHH-------HHcCChhHHHHHHHH
Q 012143 264 CLDQASAVNVAKECLLAA---LKA-DPK------------AAH--IWANL----ANAY-------YLTGDHRSSGKCLEK 314 (470)
Q Consensus 264 ~~~~~~~~~~A~~~~~~~---~~~-~p~------------~~~--~~~~l----a~~~-------~~~g~~~~A~~~~~~ 314 (470)
.|.-.|+...+...+++. +.. .+. .+. .|.-. +.+| ...|-+++|.++-++
T Consensus 221 yy~~~gq~rt~k~~lkQLQ~siqtist~~~~h~e~ilgsps~~l~~wlpkeqicaLV~l~tv~hsm~~gy~~~~~K~tDe 300 (629)
T KOG2300|consen 221 YYLLPGQVRTVKPALKQLQDSIQTISTSSRGHDEKILGSPSPILFEWLPKEQICALVYLVTVIHSMPAGYFKKAQKYTDE 300 (629)
T ss_pred HHhcccchhhhHHHHHHHHHHHhccCCCCCCccccccCCCChHHHhhccHhhhHhhhhhhHHhhhhhhHHHHHHHHHHHH
Confidence 233456655555554433 221 110 011 11100 1111 234667788887777
Q ss_pred HHhcCCCc------ccHHHHHHHHHHHHhhhc---cCchHHhhhhHHHHHHHhhcCCC---CCCCcHHHHHHHHHHHhcc
Q 012143 315 AAKLEPNC------MSTRYAVAVSRIKDAERS---QEPTEQLSWAGNEMASILREGDP---VQIEPPIAWAGFAAVQKTH 382 (470)
Q Consensus 315 a~~~~p~~------~~~~~~l~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~l~~~~~~~ 382 (470)
++...... ......+-+..++..... ..........+.++......... .....+.+...+|.....-
T Consensus 301 ~i~q~eklkq~d~~srilsm~km~~LE~iv~c~lv~~~~~~al~~i~dm~~w~~r~p~~~Llr~~~~~ih~LlGlys~sv 380 (629)
T KOG2300|consen 301 AIKQTEKLKQADLMSRILSMFKMILLEHIVMCRLVRGDYVEALEEIVDMKNWCTRFPTPLLLRAHEAQIHMLLGLYSHSV 380 (629)
T ss_pred HHHHHhhcccccchhHHHHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHhCCchHHHHHhHHHHHHHHhhHhhhc
Confidence 77543221 111111111111111100 01111111112222222222111 1113445666666666667
Q ss_pred ccHHHHHHHHHHHhcchhh-----hhHhhHHHHHHHhccHHHHHHHHHHHHhcCCCc----------HHHHHHHHHHHHH
Q 012143 383 HEVAAAFETEENELSKMEE-----CAGAGESAFLDQASAVNVAKECLLAALKADPKA----------AHIWANLANAYYL 447 (470)
Q Consensus 383 ~~~~~A~~~~~~~~~~~~~-----~~~~~l~~~~~~~~~~~~A~~~~~~al~~~p~~----------~~~~~~la~~~~~ 447 (470)
+-++.|...|..+...... ....++|.+|.+.++-+.--+.++. +.|.+ ..+++..|...+.
T Consensus 381 ~~~enAe~hf~~a~k~t~~~dl~a~~nlnlAi~YL~~~~~ed~y~~ld~---i~p~nt~s~ssq~l~a~~~~v~glfaf~ 457 (629)
T KOG2300|consen 381 NCYENAEFHFIEATKLTESIDLQAFCNLNLAISYLRIGDAEDLYKALDL---IGPLNTNSLSSQRLEASILYVYGLFAFK 457 (629)
T ss_pred chHHHHHHHHHHHHHhhhHHHHHHHHHHhHHHHHHHhccHHHHHHHHHh---cCCCCCCcchHHHHHHHHHHHHHHHHHH
Confidence 7777777777765543222 2234777777776654443333332 33432 3456667777777
Q ss_pred cCChHHHHHHHHHHHHhh
Q 012143 448 TGDHRSSGKCLEKVLMVY 465 (470)
Q Consensus 448 ~g~~~~A~~~~~~al~~~ 465 (470)
++++.+|...+.+.++..
T Consensus 458 qn~lnEaK~~l~e~Lkma 475 (629)
T KOG2300|consen 458 QNDLNEAKRFLRETLKMA 475 (629)
T ss_pred hccHHHHHHHHHHHHhhc
Confidence 788888888777777665
|
|
| >KOG2610 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=98.04 E-value=0.00036 Score=59.38 Aligned_cols=127 Identities=16% Similarity=0.130 Sum_probs=107.6
Q ss_pred HHHHHHHcCChHHHHHHHHHHhhcCCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHhh-CCCChHHHHHHHHHHHhhhcc
Q 012143 172 LGLILLKSGRLQSSISVLSSLLAVDPNNCDCIGNLGIAYFQSGDMEQSAKCFQDLILK-DQNHPAALINYAALLLCKYGS 250 (470)
Q Consensus 172 l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~-~p~~~~~~~~l~~~~~~~~~~ 250 (470)
-+.+....|++.+|....++.++-.|.+.-++..--.+++.+|+...-...+++++.. +|+-|-..+.-|...
T Consensus 109 ~aai~~~~g~~h~a~~~wdklL~d~PtDlla~kfsh~a~fy~G~~~~~k~ai~kIip~wn~dlp~~sYv~Gmya------ 182 (491)
T KOG2610|consen 109 KAAILWGRGKHHEAAIEWDKLLDDYPTDLLAVKFSHDAHFYNGNQIGKKNAIEKIIPKWNADLPCYSYVHGMYA------ 182 (491)
T ss_pred hHHHhhccccccHHHHHHHHHHHhCchhhhhhhhhhhHHHhccchhhhhhHHHHhccccCCCCcHHHHHHHHHH------
Confidence 3456677899999999999999999999999988889999999999999999999977 666654433333322
Q ss_pred cccccccchhhhhHHHhcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCChhHHHHHHHHHH
Q 012143 251 VLAGAGANTGEGACLDQASAVNVAKECLLAALKADPKAAHIWANLANAYYLTGDHRSSGKCLEKAA 316 (470)
Q Consensus 251 ~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~a~ 316 (470)
..+...|-|++|.+..+++++++|.+..+...++.++...|+++++.+...+.-
T Consensus 183 ------------FgL~E~g~y~dAEk~A~ralqiN~~D~Wa~Ha~aHVlem~~r~Keg~eFM~~te 236 (491)
T KOG2610|consen 183 ------------FGLEECGIYDDAEKQADRALQINRFDCWASHAKAHVLEMNGRHKEGKEFMYKTE 236 (491)
T ss_pred ------------hhHHHhccchhHHHHHHhhccCCCcchHHHHHHHHHHHhcchhhhHHHHHHhcc
Confidence 234579999999999999999999999999999999999999999999887643
|
|
| >COG3118 Thioredoxin domain-containing protein [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=98.02 E-value=0.00044 Score=58.12 Aligned_cols=177 Identities=15% Similarity=0.110 Sum_probs=115.7
Q ss_pred HHHHHHHHHHHHhcCCCCcchhhhcccchhhhhcChhhHHHHHHHHHHhCCCChhHHHHHHHHHHHhCChhHHHHHHHHH
Q 012143 22 RSRISSKMDSALEFGVDADGDQSGLGTSSSSREEKVSSLKTGLVHVARKMPKNAHAHFLLGLMYQRLGQPLKAVSSYEKA 101 (470)
Q Consensus 22 ~~a~~~~~~~~l~~~p~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~a 101 (470)
++.+.+.+.+.+.. ....-+..+.. ....|++..|...|..++...|++.++...++.++...|+.+.|...+...
T Consensus 119 esqlr~~ld~~~~~---~~e~~~~~~~~-~~~~e~~~~a~~~~~~al~~~~~~~~~~~~la~~~l~~g~~e~A~~iL~~l 194 (304)
T COG3118 119 ESQLRQFLDKVLPA---EEEEALAEAKE-LIEAEDFGEAAPLLKQALQAAPENSEAKLLLAECLLAAGDVEAAQAILAAL 194 (304)
T ss_pred HHHHHHHHHHhcCh---HHHHHHHHhhh-hhhccchhhHHHHHHHHHHhCcccchHHHHHHHHHHHcCChHHHHHHHHhC
Confidence 44443344444333 33344556666 889999999999999999999999999999999999999999999888764
Q ss_pred HHHHhhhhcccchhhhHHHHHHhhhccccccccCCCccccccCcccHHHHHHHHHHhhhcCccchHHHHHHHHHHHHcCC
Q 012143 102 EEILLRCEADIARPELLSLVQIHHAQCLLPESSGDNSLDKELEPEELEEILSKLKESMQSDTRQAVVWNTLGLILLKSGR 181 (470)
Q Consensus 102 l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~~~ 181 (470)
-...... .... ......+..-.. ..++ ...+++.+..+|++..+-+.+|..+...|+
T Consensus 195 P~~~~~~-------~~~~-l~a~i~ll~qaa-----------~~~~----~~~l~~~~aadPdd~~aa~~lA~~~~~~g~ 251 (304)
T COG3118 195 PLQAQDK-------AAHG-LQAQIELLEQAA-----------ATPE----IQDLQRRLAADPDDVEAALALADQLHLVGR 251 (304)
T ss_pred cccchhh-------HHHH-HHHHHHHHHHHh-----------cCCC----HHHHHHHHHhCCCCHHHHHHHHHHHHHcCC
Confidence 3221110 1100 001000000000 0111 234555677799999999999999999999
Q ss_pred hHHHHHHHHHHhhcCC--CChHHHHHHHHHHHHcCCHHHHHHHHHH
Q 012143 182 LQSSISVLSSLLAVDP--NNCDCIGNLGIAYFQSGDMEQSAKCFQD 225 (470)
Q Consensus 182 ~~~A~~~~~~a~~~~~--~~~~~~~~la~~~~~~g~~~~A~~~~~~ 225 (470)
.+.|.+.+-..++.+. .+..+...+-.++...|.-+.+...+++
T Consensus 252 ~e~Ale~Ll~~l~~d~~~~d~~~Rk~lle~f~~~g~~Dp~~~~~RR 297 (304)
T COG3118 252 NEAALEHLLALLRRDRGFEDGEARKTLLELFEAFGPADPLVLAYRR 297 (304)
T ss_pred HHHHHHHHHHHHHhcccccCcHHHHHHHHHHHhcCCCCHHHHHHHH
Confidence 9999999988887754 3455666666666666644444444433
|
|
| >PF00515 TPR_1: Tetratricopeptide repeat; InterPro: IPR001440 The tetratrico peptide repeat (TPR) is a structural motif present in a wide range of proteins [, , ] | Back alignment and domain information |
|---|
Probab=98.01 E-value=1.3e-05 Score=44.37 Aligned_cols=34 Identities=32% Similarity=0.559 Sum_probs=28.7
Q ss_pred HHHHHHHHHHHHHcCChhHHHHHHHHHHhcCCCc
Q 012143 289 AHIWANLANAYYLTGDHRSSGKCLEKAAKLEPNC 322 (470)
Q Consensus 289 ~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~p~~ 322 (470)
+.+|+++|.++..+|++++|+.+|+++++++|++
T Consensus 1 a~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~ 34 (34)
T PF00515_consen 1 AEAYYNLGNAYFQLGDYEEALEYYQRALELDPDN 34 (34)
T ss_dssp HHHHHHHHHHHHHTT-HHHHHHHHHHHHHHSTTH
T ss_pred CHHHHHHHHHHHHhCCchHHHHHHHHHHHHCcCC
Confidence 3678899999999999999999999999998873
|
It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. The X-ray structure of a domain containing three TPRs from protein phosphatase 5 revealed that TPR adopts a helix-turn-helix arrangement, with adjacent TPR motifs packing in a parallel fashion, resulting in a spiral of repeating anti-parallel alpha-helices []. The two helices are denoted helix A and helix B. The packing angle between helix A and helix B is ~24 degrees; within a single TPR and generates a right-handed superhelical shape. Helix A interacts with helix B and with helix A' of the next TPR. Two protein surfaces are generated: the inner concave surface is contributed to mainly by residue on helices A, and the other surface presents residues from both helices A and B. ; GO: 0005515 protein binding; PDB: 3SF4_C 2LNI_A 1ELW_A 2C0M_A 1FCH_B 3R9A_B 2J9Q_A 2C0L_A 1KT1_A 3FWV_A .... |
| >KOG0985 consensus Vesicle coat protein clathrin, heavy chain [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=98.00 E-value=0.02 Score=56.48 Aligned_cols=229 Identities=16% Similarity=0.133 Sum_probs=125.8
Q ss_pred cHHHHHHHHHHhhhcCccchHHHHHHHHHHHHcCChHHHHHHHHHHhhcCCCChHHHHHHHHHHHHcCCHHHHHHHHHHH
Q 012143 147 ELEEILSKLKESMQSDTRQAVVWNTLGLILLKSGRLQSSISVLSSLLAVDPNNCDCIGNLGIAYFQSGDMEQSAKCFQDL 226 (470)
Q Consensus 147 ~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~ 226 (470)
.++.|.++.++. +.+.+|..+|.+..+.|...+|++.|-++ +++..+.....+..+.|.|++-+.++.-+
T Consensus 1090 ~ldRA~efAe~~-----n~p~vWsqlakAQL~~~~v~dAieSyika-----dDps~y~eVi~~a~~~~~~edLv~yL~Ma 1159 (1666)
T KOG0985|consen 1090 SLDRAYEFAERC-----NEPAVWSQLAKAQLQGGLVKDAIESYIKA-----DDPSNYLEVIDVASRTGKYEDLVKYLLMA 1159 (1666)
T ss_pred hHHHHHHHHHhh-----CChHHHHHHHHHHHhcCchHHHHHHHHhc-----CCcHHHHHHHHHHHhcCcHHHHHHHHHHH
Confidence 345565555543 44778888888888888888888888764 56677788888888888888888887776
Q ss_pred HhhC--CCC-hHHHHHHHHHHHh-hhcccc----------------------------cccccchhhhhHHHhcCCHHHH
Q 012143 227 ILKD--QNH-PAALINYAALLLC-KYGSVL----------------------------AGAGANTGEGACLDQASAVNVA 274 (470)
Q Consensus 227 l~~~--p~~-~~~~~~l~~~~~~-~~~~~~----------------------------~~~~~~~~~~~~~~~~~~~~~A 274 (470)
.+.. |.- ....+.++.+-.- ...... .....+..++..+...|+|..|
T Consensus 1160 Rkk~~E~~id~eLi~AyAkt~rl~elE~fi~gpN~A~i~~vGdrcf~~~~y~aAkl~y~~vSN~a~La~TLV~LgeyQ~A 1239 (1666)
T KOG0985|consen 1160 RKKVREPYIDSELIFAYAKTNRLTELEEFIAGPNVANIQQVGDRCFEEKMYEAAKLLYSNVSNFAKLASTLVYLGEYQGA 1239 (1666)
T ss_pred HHhhcCccchHHHHHHHHHhchHHHHHHHhcCCCchhHHHHhHHHhhhhhhHHHHHHHHHhhhHHHHHHHHHHHHHHHHH
Confidence 5432 111 1111111111000 000000 0123344466667777888877
Q ss_pred HHHHHHHHhcCC-----------C--------------CHHHHHHHHHHHHHcCChhHHHHHHHHHHhcCCCcccHHHHH
Q 012143 275 KECLLAALKADP-----------K--------------AAHIWANLANAYYLTGDHRSSGKCLEKAAKLEPNCMSTRYAV 329 (470)
Q Consensus 275 ~~~~~~~~~~~p-----------~--------------~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~p~~~~~~~~l 329 (470)
.+.-+++-.... . .++-+-.+...|...|-+++-+..++.++-+...+......+
T Consensus 1240 VD~aRKAns~ktWK~VcfaCvd~~EFrlAQiCGL~iivhadeLeeli~~Yq~rGyFeElIsl~Ea~LGLERAHMgmfTEL 1319 (1666)
T KOG0985|consen 1240 VDAARKANSTKTWKEVCFACVDKEEFRLAQICGLNIIVHADELEELIEYYQDRGYFEELISLLEAGLGLERAHMGMFTEL 1319 (1666)
T ss_pred HHHhhhccchhHHHHHHHHHhchhhhhHHHhcCceEEEehHhHHHHHHHHHhcCcHHHHHHHHHhhhchhHHHHHHHHHH
Confidence 777776532210 0 223344566667778888888888888877665554444444
Q ss_pred HHHHHHHhhhccCchH--HhhhhHHHHHHHhhcCCCCCCCcHHHHHHHHHHHhccccHHHHHHHH
Q 012143 330 AVSRIKDAERSQEPTE--QLSWAGNEMASILREGDPVQIEPPIAWAGFAAVQKTHHEVAAAFETE 392 (470)
Q Consensus 330 ~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~ 392 (470)
+..+-. .+...-.+ .+-|..-.+.+.++.. +....|..+.-+|.+-..|+.|.-..
T Consensus 1320 aiLYsk--ykp~km~EHl~LFwsRvNipKviRA~-----eqahlW~ElvfLY~~y~eyDNAa~tm 1377 (1666)
T KOG0985|consen 1320 AILYSK--YKPEKMMEHLKLFWSRVNIPKVIRAA-----EQAHLWSELVFLYDKYEEYDNAALTM 1377 (1666)
T ss_pred HHHHHh--cCHHHHHHHHHHHHHhcchHHHHHHH-----HHHHHHHHHHHHHHhhhhhhHHHHHH
Confidence 432211 00000000 1111111122222221 22457888888888777777665543
|
|
| >PF00515 TPR_1: Tetratricopeptide repeat; InterPro: IPR001440 The tetratrico peptide repeat (TPR) is a structural motif present in a wide range of proteins [, , ] | Back alignment and domain information |
|---|
Probab=97.99 E-value=1.5e-05 Score=44.10 Aligned_cols=31 Identities=39% Similarity=0.572 Sum_probs=15.4
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHhhCCC
Q 012143 202 CIGNLGIAYFQSGDMEQSAKCFQDLILKDQN 232 (470)
Q Consensus 202 ~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~ 232 (470)
+|+.+|.++..+|++++|+..|+++++++|+
T Consensus 3 ~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~ 33 (34)
T PF00515_consen 3 AYYNLGNAYFQLGDYEEALEYYQRALELDPD 33 (34)
T ss_dssp HHHHHHHHHHHTT-HHHHHHHHHHHHHHSTT
T ss_pred HHHHHHHHHHHhCCchHHHHHHHHHHHHCcC
Confidence 4455555555555555555555555555543
|
It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. The X-ray structure of a domain containing three TPRs from protein phosphatase 5 revealed that TPR adopts a helix-turn-helix arrangement, with adjacent TPR motifs packing in a parallel fashion, resulting in a spiral of repeating anti-parallel alpha-helices []. The two helices are denoted helix A and helix B. The packing angle between helix A and helix B is ~24 degrees; within a single TPR and generates a right-handed superhelical shape. Helix A interacts with helix B and with helix A' of the next TPR. Two protein surfaces are generated: the inner concave surface is contributed to mainly by residue on helices A, and the other surface presents residues from both helices A and B. ; GO: 0005515 protein binding; PDB: 3SF4_C 2LNI_A 1ELW_A 2C0M_A 1FCH_B 3R9A_B 2J9Q_A 2C0L_A 1KT1_A 3FWV_A .... |
| >KOG0545 consensus Aryl-hydrocarbon receptor-interacting protein [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=97.97 E-value=0.0001 Score=59.59 Aligned_cols=114 Identities=15% Similarity=0.212 Sum_probs=84.5
Q ss_pred hHHHHHHHHHHHHcCCHHHHHHHHHHHHh--------hCCCChHHHHHHHHHHHhhhcccccccccchhhhhHHHhcCCH
Q 012143 200 CDCIGNLGIAYFQSGDMEQSAKCFQDLIL--------KDQNHPAALINYAALLLCKYGSVLAGAGANTGEGACLDQASAV 271 (470)
Q Consensus 200 ~~~~~~la~~~~~~g~~~~A~~~~~~~l~--------~~p~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 271 (470)
..++..-|.-++..|+|.+|...|..++. -.|..++ |..+..... ..+.+...|+...|+|
T Consensus 178 v~~l~q~GN~lfk~~~ykEA~~~YreAi~~l~~L~lkEkP~e~e-W~eLdk~~t----------pLllNy~QC~L~~~e~ 246 (329)
T KOG0545|consen 178 VPVLHQEGNRLFKLGRYKEASSKYREAIICLRNLQLKEKPGEPE-WLELDKMIT----------PLLLNYCQCLLKKEEY 246 (329)
T ss_pred hHHHHHhhhhhhhhccHHHHHHHHHHHHHHHHHHHhccCCCChH-HHHHHHhhh----------HHHHhHHHHHhhHHHH
Confidence 34566667777777777777777776653 2344443 333322211 1223345566689999
Q ss_pred HHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCChhHHHHHHHHHHhcCCCccc
Q 012143 272 NVAKECLLAALKADPKAAHIWANLANAYYLTGDHRSSGKCLEKAAKLEPNCMS 324 (470)
Q Consensus 272 ~~A~~~~~~~~~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~p~~~~ 324 (470)
-++++.....+..+|.+..+++..|.++...=+..+|...|.++++++|.-..
T Consensus 247 yevleh~seiL~~~~~nvKA~frRakAhaa~Wn~~eA~~D~~~vL~ldpslas 299 (329)
T KOG0545|consen 247 YEVLEHCSEILRHHPGNVKAYFRRAKAHAAVWNEAEAKADLQKVLELDPSLAS 299 (329)
T ss_pred HHHHHHHHHHHhcCCchHHHHHHHHHHHHhhcCHHHHHHHHHHHHhcChhhHH
Confidence 99999999999999999999999999999999999999999999999998543
|
|
| >PF07719 TPR_2: Tetratricopeptide repeat; InterPro: IPR013105 The tetratrico peptide repeat (TPR) is a structural motif present in a wide range of proteins [, , ] | Back alignment and domain information |
|---|
Probab=97.97 E-value=2.4e-05 Score=43.24 Aligned_cols=31 Identities=32% Similarity=0.506 Sum_probs=15.7
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHhhCCC
Q 012143 202 CIGNLGIAYFQSGDMEQSAKCFQDLILKDQN 232 (470)
Q Consensus 202 ~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~ 232 (470)
+++.+|.++..+|++++|++.|++++.++|+
T Consensus 3 ~~~~lg~~~~~~~~~~~A~~~~~~al~l~p~ 33 (34)
T PF07719_consen 3 AWYYLGQAYYQLGNYEEAIEYFEKALELDPN 33 (34)
T ss_dssp HHHHHHHHHHHTT-HHHHHHHHHHHHHHSTT
T ss_pred HHHHHHHHHHHhCCHHHHHHHHHHHHHHCcC
Confidence 4455555555555555555555555555554
|
It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. This repeat includes outlying Tetratricopeptide-like repeats (TPR) that are not matched by IPR001440 from INTERPRO.; PDB: 1XNF_B 3Q15_A 4ABN_A 1OUV_A 3U4T_A 3MA5_C 2KCV_A 2KCL_A 2XEV_A 3NF1_A .... |
| >PF07719 TPR_2: Tetratricopeptide repeat; InterPro: IPR013105 The tetratrico peptide repeat (TPR) is a structural motif present in a wide range of proteins [, , ] | Back alignment and domain information |
|---|
Probab=97.95 E-value=2.3e-05 Score=43.34 Aligned_cols=34 Identities=38% Similarity=0.637 Sum_probs=28.6
Q ss_pred HHHHHHHHHHHHHcCChhHHHHHHHHHHhcCCCc
Q 012143 289 AHIWANLANAYYLTGDHRSSGKCLEKAAKLEPNC 322 (470)
Q Consensus 289 ~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~p~~ 322 (470)
+.+++.+|.++..+|++++|+.+|+++++++|++
T Consensus 1 a~~~~~lg~~~~~~~~~~~A~~~~~~al~l~p~~ 34 (34)
T PF07719_consen 1 AEAWYYLGQAYYQLGNYEEAIEYFEKALELDPNN 34 (34)
T ss_dssp HHHHHHHHHHHHHTT-HHHHHHHHHHHHHHSTTS
T ss_pred CHHHHHHHHHHHHhCCHHHHHHHHHHHHHHCcCC
Confidence 4678889999999999999999999999998874
|
It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. This repeat includes outlying Tetratricopeptide-like repeats (TPR) that are not matched by IPR001440 from INTERPRO.; PDB: 1XNF_B 3Q15_A 4ABN_A 1OUV_A 3U4T_A 3MA5_C 2KCV_A 2KCL_A 2XEV_A 3NF1_A .... |
| >KOG4507 consensus Uncharacterized conserved protein, contains TPR repeats [Function unknown] | Back alignment and domain information |
|---|
Probab=97.94 E-value=0.0016 Score=59.84 Aligned_cols=122 Identities=15% Similarity=0.104 Sum_probs=89.5
Q ss_pred hHHHHHHHHHHhCCCChhHHHHHHHHHHHhCChhHHHHHHHHHHHHHhhhhcccchhhhHHHHHHhhhccccccccCCCc
Q 012143 59 SLKTGLVHVARKMPKNAHAHFLLGLMYQRLGQPLKAVSSYEKAEEILLRCEADIARPELLSLVQIHHAQCLLPESSGDNS 138 (470)
Q Consensus 59 ~A~~~~~~~l~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 138 (470)
.-...+...++.+|.++..+..-+.....+|+..+|..++..++...|..... .- ...+|.++
T Consensus 197 ~~~~~~~~glq~~~~sw~lH~~as~YWR~~G~~~~A~~Ca~~a~hf~~~h~kd---i~-------lLSlaTiL------- 259 (886)
T KOG4507|consen 197 DIGHLIHEGLQKNTSSWVLHNMASFYWRIKGEPYQAVECAMRALHFSSRHNKD---IA-------LLSLATVL------- 259 (886)
T ss_pred HHHHHHHHhhhcCchhHHHHHHHHHHHHHcCChhhhhHHHHHHhhhCCccccc---ch-------hhhHHHHH-------
Confidence 34455666777888877766666666667899999999999999886542211 11 12233333
Q ss_pred cccccCcccHHHHHHHHHHhhhcCccchHHHHHHHHHHHHcCChHHHHHHHHHHhhcCCCChH
Q 012143 139 LDKELEPEELEEILSKLKESMQSDTRQAVVWNTLGLILLKSGRLQSSISVLSSLLAVDPNNCD 201 (470)
Q Consensus 139 ~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~ 201 (470)
.+.|...+|--++..++...|....-++.++.++...+.+.....+|..+.+.+|....
T Consensus 260 ----~RaG~sadA~iILhAA~~dA~~~t~n~y~l~~i~aml~~~N~S~~~ydha~k~~p~f~q 318 (886)
T KOG4507|consen 260 ----HRAGFSADAAVILHAALDDADFFTSNYYTLGNIYAMLGEYNHSVLCYDHALQARPGFEQ 318 (886)
T ss_pred ----HHcccccchhheeehhccCCccccccceeHHHHHHHHhhhhhhhhhhhhhhccCcchhH
Confidence 34444578888888888887777777999999999999999999999999999887643
|
|
| >PF10300 DUF3808: Protein of unknown function (DUF3808); InterPro: IPR019412 This entry represents a family of proteins conserved from fungi to humans | Back alignment and domain information |
|---|
Probab=97.91 E-value=0.0017 Score=61.01 Aligned_cols=168 Identities=17% Similarity=0.072 Sum_probs=110.0
Q ss_pred HcCCHHHHHHHHHHHHhhCCCChHHHHHHHHHHHhhhcccccccccchhhhhHH-H--hcCCHHHHHHHHHHHHhcCCCC
Q 012143 212 QSGDMEQSAKCFQDLILKDQNHPAALINYAALLLCKYGSVLAGAGANTGEGACL-D--QASAVNVAKECLLAALKADPKA 288 (470)
Q Consensus 212 ~~g~~~~A~~~~~~~l~~~p~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~-~--~~~~~~~A~~~~~~~~~~~p~~ 288 (470)
-.|+-+.++..+.++.+. ++-......+..+.+.. .+-... . .....+.|.+++....+..|+.
T Consensus 200 F~gdR~~GL~~L~~~~~~-~~i~~~la~L~LL~y~~------------~~~~~~~~~~~~~~~~~a~~lL~~~~~~yP~s 266 (468)
T PF10300_consen 200 FSGDRELGLRLLWEASKS-ENIRSPLAALVLLWYHL------------VVPSFLGIDGEDVPLEEAEELLEEMLKRYPNS 266 (468)
T ss_pred cCCcHHHHHHHHHHHhcc-CCcchHHHHHHHHHHHH------------HHHHHcCCcccCCCHHHHHHHHHHHHHhCCCc
Confidence 468999999999998773 32222222222211100 000000 1 3667889999999999999999
Q ss_pred HHHHHHHHHHHHHcCChhHHHHHHHHHHhcCCCcccHHHHHHHHHHHHhhhccCchHHhhhhHHHHHHHhhcCCCCCCCc
Q 012143 289 AHIWANLANAYYLTGDHRSSGKCLEKAAKLEPNCMSTRYAVAVSRIKDAERSQEPTEQLSWAGNEMASILREGDPVQIEP 368 (470)
Q Consensus 289 ~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~p~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 368 (470)
+-..+..|+++...|+.++|++.|++++.....-..
T Consensus 267 ~lfl~~~gR~~~~~g~~~~Ai~~~~~a~~~q~~~~Q-------------------------------------------- 302 (468)
T PF10300_consen 267 ALFLFFEGRLERLKGNLEEAIESFERAIESQSEWKQ-------------------------------------------- 302 (468)
T ss_pred HHHHHHHHHHHHHhcCHHHHHHHHHHhccchhhHHh--------------------------------------------
Confidence 999999999999999999999999998843222110
Q ss_pred HHHHHHHHHHHhccccHHHHHHHHHHHhcchhhhhHhhHHHHHHHhccHHHHHHHHHHHHhcCCCc-HHHHHHHHHHHHH
Q 012143 369 PIAWAGFAAVQKTHHEVAAAFETEENELSKMEECAGAGESAFLDQASAVNVAKECLLAALKADPKA-AHIWANLANAYYL 447 (470)
Q Consensus 369 ~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~p~~-~~~~~~la~~~~~ 447 (470)
...-.++.+|.++....+|++|..+|.+..+.+.-+ ....|..|.|+..
T Consensus 303 ------------------------------l~~l~~~El~w~~~~~~~w~~A~~~f~~L~~~s~WSka~Y~Y~~a~c~~~ 352 (468)
T PF10300_consen 303 ------------------------------LHHLCYFELAWCHMFQHDWEEAAEYFLRLLKESKWSKAFYAYLAAACLLM 352 (468)
T ss_pred ------------------------------HHHHHHHHHHHHHHHHchHHHHHHHHHHHHhccccHHHHHHHHHHHHHHh
Confidence 011123455556777777777777777777765443 3344666777777
Q ss_pred cCCh-------HHHHHHHHHHHHhhc
Q 012143 448 TGDH-------RSSGKCLEKVLMVYC 466 (470)
Q Consensus 448 ~g~~-------~~A~~~~~~al~~~~ 466 (470)
.|+. ++|.+.|.++-.+..
T Consensus 353 l~~~~~~~~~~~~a~~l~~~vp~l~~ 378 (468)
T PF10300_consen 353 LGREEEAKEHKKEAEELFRKVPKLKQ 378 (468)
T ss_pred hccchhhhhhHHHHHHHHHHHHHHHh
Confidence 8877 667777766655543
|
In humans this protein is expressed in primary breast carcinomas but not in normal breast tissue, and has a putative eukaryotic RNP-1 RNA binding region and a candidate anchoring transmembrane domain. The human protein is coordinately regulated with oestrogen receptor, but is not necessarily oestradiol-responsive []. Members of this family carry a tetratricopeptide repeat (IPR013105 from INTERPRO) at their C terminus. |
| >PF02259 FAT: FAT domain; InterPro: IPR003151 The FAT domain is a domain present in the PIK-related kinases | Back alignment and domain information |
|---|
Probab=97.90 E-value=0.0065 Score=55.53 Aligned_cols=66 Identities=17% Similarity=0.034 Sum_probs=49.5
Q ss_pred hhHhhHHHHHHHh------ccHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHcCCh-----------------HHHHHHH
Q 012143 402 CAGAGESAFLDQA------SAVNVAKECLLAALKADPKAAHIWANLANAYYLTGDH-----------------RSSGKCL 458 (470)
Q Consensus 402 ~~~~~l~~~~~~~------~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~-----------------~~A~~~~ 458 (470)
.++..+|...... +..++++..|.++++.+|+...+|+.+|..+...=+. ..|+..|
T Consensus 253 ~~~l~~a~w~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~k~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~ai~~y 332 (352)
T PF02259_consen 253 KAFLLLAKWLDELYSKLSSESSDEILKYYKEATKLDPSWEKAWHSWALFNDKLLESDPREKEESSQEDRSEYLEQAIEGY 332 (352)
T ss_pred HHHHHHHHHHHhhccccccccHHHHHHHHHHHHHhChhHHHHHHHHHHHHHHHHHhhhhcccccchhHHHHHHHHHHHHH
Confidence 4455566655566 7889999999999999999999999999887544221 3477777
Q ss_pred HHHHHhhcc
Q 012143 459 EKVLMVYCS 467 (470)
Q Consensus 459 ~~al~~~~~ 467 (470)
-+++.+.++
T Consensus 333 ~~al~~~~~ 341 (352)
T PF02259_consen 333 LKALSLGSK 341 (352)
T ss_pred HHHHhhCCC
Confidence 777776654
|
Members of the family of PIK-related kinases may act as intracellular sensors that govern radial and horizontal pathways [].; GO: 0005515 protein binding |
| >COG3118 Thioredoxin domain-containing protein [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=97.89 E-value=0.00086 Score=56.42 Aligned_cols=135 Identities=21% Similarity=0.201 Sum_probs=86.2
Q ss_pred HHHHHHHHHHHHcCChHHHHHHHHHHhhcCCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCChHHHHHHHHHHHh
Q 012143 167 VVWNTLGLILLKSGRLQSSISVLSSLLAVDPNNCDCIGNLGIAYFQSGDMEQSAKCFQDLILKDQNHPAALINYAALLLC 246 (470)
Q Consensus 167 ~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~l~~~~~~ 246 (470)
+.-+.-+.-....|++.+|...|..++...|++..+...++.++...|+.+.|...+...-....... ..-..+.+-.
T Consensus 135 e~~~~~~~~~~~~e~~~~a~~~~~~al~~~~~~~~~~~~la~~~l~~g~~e~A~~iL~~lP~~~~~~~-~~~l~a~i~l- 212 (304)
T COG3118 135 EEALAEAKELIEAEDFGEAAPLLKQALQAAPENSEAKLLLAECLLAAGDVEAAQAILAALPLQAQDKA-AHGLQAQIEL- 212 (304)
T ss_pred HHHHHHhhhhhhccchhhHHHHHHHHHHhCcccchHHHHHHHHHHHcCChHHHHHHHHhCcccchhhH-HHHHHHHHHH-
Confidence 34455666677788888888888888888888888888888888888888888777765432222111 1111111111
Q ss_pred hhcccccccccchhhhhHHHhcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCChhHHHHHHHHHHhcCCCc
Q 012143 247 KYGSVLAGAGANTGEGACLDQASAVNVAKECLLAALKADPKAAHIWANLANAYYLTGDHRSSGKCLEKAAKLEPNC 322 (470)
Q Consensus 247 ~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~p~~ 322 (470)
+.+.....+. ..+.+.+..+|++..+-+.+|..+...|+.+.|.+.+-..++.+...
T Consensus 213 ------------------l~qaa~~~~~-~~l~~~~aadPdd~~aa~~lA~~~~~~g~~e~Ale~Ll~~l~~d~~~ 269 (304)
T COG3118 213 ------------------LEQAAATPEI-QDLQRRLAADPDDVEAALALADQLHLVGRNEAALEHLLALLRRDRGF 269 (304)
T ss_pred ------------------HHHHhcCCCH-HHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcccc
Confidence 0012222211 23455566688888888888888888888888888887777765543
|
|
| >KOG0376 consensus Serine-threonine phosphatase 2A, catalytic subunit [General function prediction only] | Back alignment and domain information |
|---|
Probab=97.87 E-value=3.3e-05 Score=68.94 Aligned_cols=111 Identities=14% Similarity=0.095 Sum_probs=100.5
Q ss_pred HHHHHHHHHcCChHHHHHHHHHHhhcCCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCChHHHHHHHHHHHhhhc
Q 012143 170 NTLGLILLKSGRLQSSISVLSSLLAVDPNNCDCIGNLGIAYFQSGDMEQSAKCFQDLILKDQNHPAALINYAALLLCKYG 249 (470)
Q Consensus 170 ~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~l~~~~~~~~~ 249 (470)
-.-+...+.-+.++.|+..|.++++++|+.+..+.+.+..+.+.+++..|+..+.++++.+|....+++..|....
T Consensus 8 k~ean~~l~~~~fd~avdlysKaI~ldpnca~~~anRa~a~lK~e~~~~Al~Da~kaie~dP~~~K~Y~rrg~a~m---- 83 (476)
T KOG0376|consen 8 KNEANEALKDKVFDVAVDLYSKAIELDPNCAIYFANRALAHLKVESFGGALHDALKAIELDPTYIKAYVRRGTAVM---- 83 (476)
T ss_pred hhHHhhhcccchHHHHHHHHHHHHhcCCcceeeechhhhhheeechhhhHHHHHHhhhhcCchhhheeeeccHHHH----
Confidence 3456677888999999999999999999999999999999999999999999999999999999999888887777
Q ss_pred ccccccccchhhhhHHHhcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHH
Q 012143 250 SVLAGAGANTGEGACLDQASAVNVAKECLLAALKADPKAAHIWANLANAYYL 301 (470)
Q Consensus 250 ~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~la~~~~~ 301 (470)
..+.+.+|...|+....+.|+++.+...+..+-..
T Consensus 84 -----------------~l~~~~~A~~~l~~~~~l~Pnd~~~~r~~~Ec~~~ 118 (476)
T KOG0376|consen 84 -----------------ALGEFKKALLDLEKVKKLAPNDPDATRKIDECNKI 118 (476)
T ss_pred -----------------hHHHHHHHHHHHHHhhhcCcCcHHHHHHHHHHHHH
Confidence 68999999999999999999999998887776543
|
|
| >PF13281 DUF4071: Domain of unknown function (DUF4071) | Back alignment and domain information |
|---|
Probab=97.85 E-value=0.011 Score=52.75 Aligned_cols=127 Identities=16% Similarity=0.122 Sum_probs=90.2
Q ss_pred chHHHHHHHHHHHHcCChHHHHHHHHHHhhc----CCCChHHHHHHHHHHHH---cCCHHHHHHHHHH-HHhhCCCChHH
Q 012143 165 QAVVWNTLGLILLKSGRLQSSISVLSSLLAV----DPNNCDCIGNLGIAYFQ---SGDMEQSAKCFQD-LILKDQNHPAA 236 (470)
Q Consensus 165 ~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~----~~~~~~~~~~la~~~~~---~g~~~~A~~~~~~-~l~~~p~~~~~ 236 (470)
.+++..++-.+|....+|+.-+...+..-.+ -++.+.+.+.+|.++-+ .|+.++|+..+.. .....+.+++.
T Consensus 140 s~div~~lllSyRdiqdydamI~Lve~l~~~p~~~~~~~~~i~~~yafALnRrn~~gdre~Al~il~~~l~~~~~~~~d~ 219 (374)
T PF13281_consen 140 SPDIVINLLLSYRDIQDYDAMIKLVETLEALPTCDVANQHNIKFQYAFALNRRNKPGDREKALQILLPVLESDENPDPDT 219 (374)
T ss_pred ChhHHHHHHHHhhhhhhHHHHHHHHHHhhccCccchhcchHHHHHHHHHHhhcccCCCHHHHHHHHHHHHhccCCCChHH
Confidence 3566778888899999999999999887666 45567788899999998 9999999999999 55566788899
Q ss_pred HHHHHHHHHhhhcccccccccchhhhhHHHhcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCC
Q 012143 237 LINYAALLLCKYGSVLAGAGANTGEGACLDQASAVNVAKECLLAALKADPKAAHIWANLANAYYLTGD 304 (470)
Q Consensus 237 ~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~la~~~~~~g~ 304 (470)
+..+|.+|-...... ........++|+.+|.++.+++|+ ...-.+++.++...|.
T Consensus 220 ~gL~GRIyKD~~~~s------------~~~d~~~ldkAi~~Y~kgFe~~~~-~Y~GIN~AtLL~~~g~ 274 (374)
T PF13281_consen 220 LGLLGRIYKDLFLES------------NFTDRESLDKAIEWYRKGFEIEPD-YYSGINAATLLMLAGH 274 (374)
T ss_pred HHHHHHHHHHHHHHc------------CccchHHHHHHHHHHHHHHcCCcc-ccchHHHHHHHHHcCC
Confidence 999999987431100 000122366677777777776643 3444555555555554
|
|
| >PF13281 DUF4071: Domain of unknown function (DUF4071) | Back alignment and domain information |
|---|
Probab=97.84 E-value=0.0037 Score=55.62 Aligned_cols=167 Identities=17% Similarity=0.162 Sum_probs=114.4
Q ss_pred ccCcccHHHHHHHHHHhhhc----CccchHHHHHHHHHHHH---cCChHHHHHHHHH-HhhcCCCChHHHHHHHHHHHH-
Q 012143 142 ELEPEELEEILSKLKESMQS----DTRQAVVWNTLGLILLK---SGRLQSSISVLSS-LLAVDPNNCDCIGNLGIAYFQ- 212 (470)
Q Consensus 142 ~~~~~~~~~A~~~~~~~~~~----~p~~~~~~~~l~~~~~~---~~~~~~A~~~~~~-a~~~~~~~~~~~~~la~~~~~- 212 (470)
|....+|+.-+++.+..-.. -++.+.+.+.+|.++-+ .|+.++|+..+.. .....+.+++.+..+|.+|-.
T Consensus 151 yRdiqdydamI~Lve~l~~~p~~~~~~~~~i~~~yafALnRrn~~gdre~Al~il~~~l~~~~~~~~d~~gL~GRIyKD~ 230 (374)
T PF13281_consen 151 YRDIQDYDAMIKLVETLEALPTCDVANQHNIKFQYAFALNRRNKPGDREKALQILLPVLESDENPDPDTLGLLGRIYKDL 230 (374)
T ss_pred hhhhhhHHHHHHHHHHhhccCccchhcchHHHHHHHHHHhhcccCCCHHHHHHHHHHHHhccCCCChHHHHHHHHHHHHH
Confidence 34567788888888887665 45667788889999999 9999999999999 555677889999999999853
Q ss_pred --------cCCHHHHHHHHHHHHhhCCCChHHHHHHHHHHHhhhcccccccccchhhhhHHHhcCCHHHHHHHHHH----
Q 012143 213 --------SGDMEQSAKCFQDLILKDQNHPAALINYAALLLCKYGSVLAGAGANTGEGACLDQASAVNVAKECLLA---- 280 (470)
Q Consensus 213 --------~g~~~~A~~~~~~~l~~~p~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~---- 280 (470)
....++|+..|.++.+.+|+.... .+++.++...+.... ......+-...+..
T Consensus 231 ~~~s~~~d~~~ldkAi~~Y~kgFe~~~~~Y~G-IN~AtLL~~~g~~~~--------------~~~el~~i~~~l~~llg~ 295 (374)
T PF13281_consen 231 FLESNFTDRESLDKAIEWYRKGFEIEPDYYSG-INAATLLMLAGHDFE--------------TSEELRKIGVKLSSLLGR 295 (374)
T ss_pred HHHcCccchHHHHHHHHHHHHHHcCCccccch-HHHHHHHHHcCCccc--------------chHHHHHHHHHHHHHHHh
Confidence 235789999999999999765444 445555442211100 00000000001111
Q ss_pred -HHhcCCCCHHHHHHHHHHHHHcCChhHHHHHHHHHHhcCCCcc
Q 012143 281 -ALKADPKAAHIWANLANAYYLTGDHRSSGKCLEKAAKLEPNCM 323 (470)
Q Consensus 281 -~~~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~p~~~ 323 (470)
.....-.+...+-.++.+..-.|++++|+..+++++...|...
T Consensus 296 kg~~~~~~dYWd~ATl~Ea~vL~~d~~ka~~a~e~~~~l~~~~W 339 (374)
T PF13281_consen 296 KGSLEKMQDYWDVATLLEASVLAGDYEKAIQAAEKAFKLKPPAW 339 (374)
T ss_pred hccccccccHHHHHHHHHHHHHcCCHHHHHHHHHHHhhcCCcch
Confidence 1111223455667788889999999999999999999876643
|
|
| >KOG2300 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=97.84 E-value=0.022 Score=51.50 Aligned_cols=419 Identities=13% Similarity=0.068 Sum_probs=232.5
Q ss_pred hhhhhhhh--hhHHHHHHHHHHHHhcCCCC---cchhhhcccchhhhhcChhhHHHHHHHHHHhC---CCC----hhHHH
Q 012143 12 GKKINKLG--KCRSRISSKMDSALEFGVDA---DGDQSGLGTSSSSREEKVSSLKTGLVHVARKM---PKN----AHAHF 79 (470)
Q Consensus 12 ~~~~~~~g--~~~~a~~~~~~~~l~~~p~~---~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~---p~~----~~~~~ 79 (470)
+..++..| +.+..+ ..++..+...|.+ +.....+|.+++....+++.|+..++++..+. |.. ..+.-
T Consensus 14 Ae~~rt~~PPkIkk~I-kClqA~~~~~is~~veart~LqLg~lL~~yT~N~elAksHLekA~~i~~~ip~fydvKf~a~S 92 (629)
T KOG2300|consen 14 AEHFRTSGPPKIKKCI-KCLQAIFQFQISFLVEARTHLQLGALLLRYTKNVELAKSHLEKAWLISKSIPSFYDVKFQAAS 92 (629)
T ss_pred HHHHhhcCChhHHHHH-HHHHHHhccCChHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHcccccHHhhhhHHHH
Confidence 34466677 778888 6777666666653 44667888886778999999999999987554 443 34677
Q ss_pred HHHHHHHHhC-ChhHHHHHHHHHHHHHhhhhcccchhhhHHHHHHhhhccccccccCCCccccccCcccHHHHHHHHHHh
Q 012143 80 LLGLMYQRLG-QPLKAVSSYEKAEEILLRCEADIARPELLSLVQIHHAQCLLPESSGDNSLDKELEPEELEEILSKLKES 158 (470)
Q Consensus 80 ~l~~~~~~~g-~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~ 158 (470)
.|+.+|.... .+..|...+++++++.... |-+ .+.....++.+ +.-..++..|++.+.-.
T Consensus 93 lLa~lh~~~~~s~~~~KalLrkaielsq~~------p~w--sckllfQLaql-----------~~idkD~~sA~elLavg 153 (629)
T KOG2300|consen 93 LLAHLHHQLAQSFPPAKALLRKAIELSQSV------PYW--SCKLLFQLAQL-----------HIIDKDFPSALELLAVG 153 (629)
T ss_pred HHHHHHHHhcCCCchHHHHHHHHHHHhcCC------chh--hHHHHHHHHHH-----------HhhhccchhHHHHHhcc
Confidence 8999999887 8999999999999985332 211 11222222222 23456678888775433
Q ss_pred hhc-Ccc---chHHHHH--HHHHHHHcCChH---HHHHHHHHHhhcCCCCh-------HHHHHHHHHH-HHcCCHHHHHH
Q 012143 159 MQS-DTR---QAVVWNT--LGLILLKSGRLQ---SSISVLSSLLAVDPNNC-------DCIGNLGIAY-FQSGDMEQSAK 221 (470)
Q Consensus 159 ~~~-~p~---~~~~~~~--l~~~~~~~~~~~---~A~~~~~~a~~~~~~~~-------~~~~~la~~~-~~~g~~~~A~~ 221 (470)
... +|- ...+.+. .+.++....+.. .+.....+.++....++ ..+..+-.+| ...|+...+..
T Consensus 154 a~sAd~~~~~ylr~~ftls~~~ll~me~d~~dV~~ll~~~~qi~~n~~sdk~~~E~LkvFyl~lql~yy~~~gq~rt~k~ 233 (629)
T KOG2300|consen 154 AESADHICFPYLRMLFTLSMLMLLIMERDDYDVEKLLQRCGQIWQNISSDKTQKEMLKVFYLVLQLSYYLLPGQVRTVKP 233 (629)
T ss_pred ccccchhhhHHHHHHHHHHHHHHHHhCccHHHHHHHHHHHHHHHhccCCChHHHHHHHHHHHHHHHHHHhcccchhhhHH
Confidence 221 111 1122222 233333333333 33444444443322222 1333343333 45677666665
Q ss_pred HHHHH---Hhh-CCC-----------ChH---HHHH----HHHHHHhhhcccccccccchhhhhHHHhcCCHHHHHHHHH
Q 012143 222 CFQDL---ILK-DQN-----------HPA---ALIN----YAALLLCKYGSVLAGAGANTGEGACLDQASAVNVAKECLL 279 (470)
Q Consensus 222 ~~~~~---l~~-~p~-----------~~~---~~~~----l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~ 279 (470)
.+++. +.. .+. ++. .|.- -+.++.. .-.--...|-+++|.++-+
T Consensus 234 ~lkQLQ~siqtist~~~~h~e~ilgsps~~l~~wlpkeqicaLV~l~--------------tv~hsm~~gy~~~~~K~tD 299 (629)
T KOG2300|consen 234 ALKQLQDSIQTISTSSRGHDEKILGSPSPILFEWLPKEQICALVYLV--------------TVIHSMPAGYFKKAQKYTD 299 (629)
T ss_pred HHHHHHHHHhccCCCCCCccccccCCCChHHHhhccHhhhHhhhhhh--------------HHhhhhhhHHHHHHHHHHH
Confidence 55543 221 111 100 0100 0111110 0000013566677777777
Q ss_pred HHHhcC------CCC--------HHHHHHHHHHHHHcCChhHHHHHHHHHHhcCCCcccHHH---HHHH--HHHHHhhhc
Q 012143 280 AALKAD------PKA--------AHIWANLANAYYLTGDHRSSGKCLEKAAKLEPNCMSTRY---AVAV--SRIKDAERS 340 (470)
Q Consensus 280 ~~~~~~------p~~--------~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~p~~~~~~~---~l~~--~~~~~~~~~ 340 (470)
+++..- |.. ...+..+..+-.-.|++.+|++....+.+.....+.... .-+. ..++.....
T Consensus 300 e~i~q~eklkq~d~~srilsm~km~~LE~iv~c~lv~~~~~~al~~i~dm~~w~~r~p~~~Llr~~~~~ih~LlGlys~s 379 (629)
T KOG2300|consen 300 EAIKQTEKLKQADLMSRILSMFKMILLEHIVMCRLVRGDYVEALEEIVDMKNWCTRFPTPLLLRAHEAQIHMLLGLYSHS 379 (629)
T ss_pred HHHHHHhhcccccchhHHHHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHhCCchHHHHHhHHHHHHHHhhHhhh
Confidence 766542 211 123445666777889999999988877765433333111 1110 111111111
Q ss_pred cCchHHhhhhHHHHHHHhhcCCCCCCCcHHHHHHHHHHHhccccHHHHHHHHHHHhcc---------hhhhhHhhHHHHH
Q 012143 341 QEPTEQLSWAGNEMASILREGDPVQIEPPIAWAGFAAVQKTHHEVAAAFETEENELSK---------MEECAGAGESAFL 411 (470)
Q Consensus 341 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~---------~~~~~~~~l~~~~ 411 (470)
...+..+...+..........+. .+..-.+++..|.+.++-+.-.+.....-.+ ....+++-.|...
T Consensus 380 ---v~~~enAe~hf~~a~k~t~~~dl-~a~~nlnlAi~YL~~~~~ed~y~~ld~i~p~nt~s~ssq~l~a~~~~v~glfa 455 (629)
T KOG2300|consen 380 ---VNCYENAEFHFIEATKLTESIDL-QAFCNLNLAISYLRIGDAEDLYKALDLIGPLNTNSLSSQRLEASILYVYGLFA 455 (629)
T ss_pred ---cchHHHHHHHHHHHHHhhhHHHH-HHHHHHhHHHHHHHhccHHHHHHHHHhcCCCCCCcchHHHHHHHHHHHHHHHH
Confidence 11122222223333332222111 2345668899999988777666655542211 1224566777788
Q ss_pred HHhccHHHHHHHHHHHHhcCCC------cHHHHHHHHHHHHHcCChHHHHHHHHHHHHhhccC
Q 012143 412 DQASAVNVAKECLLAALKADPK------AAHIWANLANAYYLTGDHRSSGKCLEKVLMVYCSS 468 (470)
Q Consensus 412 ~~~~~~~~A~~~~~~al~~~p~------~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~ 468 (470)
+..+++.+|...+.+.+++... ..-.+..||.+....|+..++.+...-++++..+.
T Consensus 456 f~qn~lnEaK~~l~e~Lkmanaed~~rL~a~~LvLLs~v~lslgn~~es~nmvrpamqlAkKi 518 (629)
T KOG2300|consen 456 FKQNDLNEAKRFLRETLKMANAEDLNRLTACSLVLLSHVFLSLGNTVESRNMVRPAMQLAKKI 518 (629)
T ss_pred HHhccHHHHHHHHHHHHhhcchhhHHHHHHHHHHHHHHHHHHhcchHHHHhccchHHHHHhcC
Confidence 8999999999999999987521 13456778999999999999999988888876543
|
|
| >PF10300 DUF3808: Protein of unknown function (DUF3808); InterPro: IPR019412 This entry represents a family of proteins conserved from fungi to humans | Back alignment and domain information |
|---|
Probab=97.82 E-value=0.001 Score=62.47 Aligned_cols=89 Identities=20% Similarity=0.197 Sum_probs=77.8
Q ss_pred CcccHHHHHHHHHHhhhcCccchHHHHHHHHHHHHcCChHHHHHHHHHHhhcCCCC----hHHHHHHHHHHHHcCCHHHH
Q 012143 144 EPEELEEILSKLKESMQSDTRQAVVWNTLGLILLKSGRLQSSISVLSSLLAVDPNN----CDCIGNLGIAYFQSGDMEQS 219 (470)
Q Consensus 144 ~~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~----~~~~~~la~~~~~~g~~~~A 219 (470)
...+.+.|.+.+.......|+.+-.++..|.++...|+.++|++.|++++.....- .-+++.+|.++..+++|++|
T Consensus 245 ~~~~~~~a~~lL~~~~~~yP~s~lfl~~~gR~~~~~g~~~~Ai~~~~~a~~~q~~~~Ql~~l~~~El~w~~~~~~~w~~A 324 (468)
T PF10300_consen 245 EDVPLEEAEELLEEMLKRYPNSALFLFFEGRLERLKGNLEEAIESFERAIESQSEWKQLHHLCYFELAWCHMFQHDWEEA 324 (468)
T ss_pred cCCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHhcCHHHHHHHHHHhccchhhHHhHHHHHHHHHHHHHHHHchHHHH
Confidence 34577999999999999999999999999999999999999999999988543332 34788999999999999999
Q ss_pred HHHHHHHHhhCCC
Q 012143 220 AKCFQDLILKDQN 232 (470)
Q Consensus 220 ~~~~~~~l~~~p~ 232 (470)
..+|.+..+.+.-
T Consensus 325 ~~~f~~L~~~s~W 337 (468)
T PF10300_consen 325 AEYFLRLLKESKW 337 (468)
T ss_pred HHHHHHHHhcccc
Confidence 9999999986544
|
In humans this protein is expressed in primary breast carcinomas but not in normal breast tissue, and has a putative eukaryotic RNP-1 RNA binding region and a candidate anchoring transmembrane domain. The human protein is coordinately regulated with oestrogen receptor, but is not necessarily oestradiol-responsive []. Members of this family carry a tetratricopeptide repeat (IPR013105 from INTERPRO) at their C terminus. |
| >COG2976 Uncharacterized protein conserved in bacteria [Function unknown] | Back alignment and domain information |
|---|
Probab=97.80 E-value=0.0038 Score=49.16 Aligned_cols=116 Identities=15% Similarity=0.133 Sum_probs=78.6
Q ss_pred HHHHHHHHhhhcCccc---hHHHHHHHHHHHHcCChHHHHHHHHHHhhcCCCC---hHHHHHHHHHHHHcCCHHHHHHHH
Q 012143 150 EILSKLKESMQSDTRQ---AVVWNTLGLILLKSGRLQSSISVLSSLLAVDPNN---CDCIGNLGIAYFQSGDMEQSAKCF 223 (470)
Q Consensus 150 ~A~~~~~~~~~~~p~~---~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~---~~~~~~la~~~~~~g~~~~A~~~~ 223 (470)
+.....++....+|.. .-+...++..+...|++++|+..++.++....+. .-+-.+++.+...+|.+++|+..+
T Consensus 70 ~~~~~~ekf~~~n~~t~Ya~laaL~lAk~~ve~~~~d~A~aqL~~~l~~t~De~lk~l~~lRLArvq~q~~k~D~AL~~L 149 (207)
T COG2976 70 KSIAAAEKFVQANGKTIYAVLAALELAKAEVEANNLDKAEAQLKQALAQTKDENLKALAALRLARVQLQQKKADAALKTL 149 (207)
T ss_pred hhHHHHHHHHhhccccHHHHHHHHHHHHHHHhhccHHHHHHHHHHHHccchhHHHHHHHHHHHHHHHHHhhhHHHHHHHH
Confidence 3344444555545443 3355678889999999999999999988754432 346788999999999999999888
Q ss_pred HHHHhhCCCChHHHHHHHHHHHhhhcccccccccchhhhhHHHhcCCHHHHHHHHHHHHhcCCC
Q 012143 224 QDLILKDQNHPAALINYAALLLCKYGSVLAGAGANTGEGACLDQASAVNVAKECLLAALKADPK 287 (470)
Q Consensus 224 ~~~l~~~p~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~p~ 287 (470)
...-. ..|..+..-+ .|+++...|+-++|+..|.+++...++
T Consensus 150 ~t~~~------~~w~~~~~el----------------rGDill~kg~k~~Ar~ay~kAl~~~~s 191 (207)
T COG2976 150 DTIKE------ESWAAIVAEL----------------RGDILLAKGDKQEARAAYEKALESDAS 191 (207)
T ss_pred hcccc------ccHHHHHHHH----------------hhhHHHHcCchHHHHHHHHHHHHccCC
Confidence 76432 1222222111 255555788888888888888877644
|
|
| >KOG0530 consensus Protein farnesyltransferase, alpha subunit/protein geranylgeranyltransferase type I, alpha subunit [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=97.79 E-value=0.014 Score=48.26 Aligned_cols=162 Identities=14% Similarity=0.104 Sum_probs=117.9
Q ss_pred HHHHHHHHHHhhhcCccchHHHHHHHHHHHHcC-ChHHHHHHHHHHhhcCCCChHHHHHHHHHHHHcCCHH-HHHHHHHH
Q 012143 148 LEEILSKLKESMQSDTRQAVVWNTLGLILLKSG-RLQSSISVLSSLLAVDPNNCDCIGNLGIAYFQSGDME-QSAKCFQD 225 (470)
Q Consensus 148 ~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~~-~~~~A~~~~~~a~~~~~~~~~~~~~la~~~~~~g~~~-~A~~~~~~ 225 (470)
-..|+.+-..++..+|-+..+|...-.++..++ +..+-++++...++-+|++..+|...-.+....|++. .-++..+.
T Consensus 59 S~RAl~LT~d~i~lNpAnYTVW~yRr~iL~~l~~dL~~El~~l~eI~e~npKNYQvWHHRr~ive~l~d~s~rELef~~~ 138 (318)
T KOG0530|consen 59 SPRALQLTEDAIRLNPANYTVWQYRRVILRHLMSDLNKELEYLDEIIEDNPKNYQVWHHRRVIVELLGDPSFRELEFTKL 138 (318)
T ss_pred CHHHHHHHHHHHHhCcccchHHHHHHHHHHHhHHHHHHHHHHHHHHHHhCccchhHHHHHHHHHHHhcCcccchHHHHHH
Confidence 367888888888888888888777666665553 5667778888888888888888888888888888887 77888888
Q ss_pred HHhhCCCChHHHHHHHHHHHhhhcccccccccchhhhhHHHhcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHH-cC-
Q 012143 226 LILKDQNHPAALINYAALLLCKYGSVLAGAGANTGEGACLDQASAVNVAKECLLAALKADPKAAHIWANLANAYYL-TG- 303 (470)
Q Consensus 226 ~l~~~p~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~la~~~~~-~g- 303 (470)
++..+..+-.+|...-.+.. .-+.++.-+.+..+.++.+-.+-.+|...--+... .|
T Consensus 139 ~l~~DaKNYHaWshRqW~~r---------------------~F~~~~~EL~y~~~Lle~Di~NNSAWN~Ryfvi~~~~~~ 197 (318)
T KOG0530|consen 139 MLDDDAKNYHAWSHRQWVLR---------------------FFKDYEDELAYADELLEEDIRNNSAWNQRYFVITNTKGV 197 (318)
T ss_pred HHhccccchhhhHHHHHHHH---------------------HHhhHHHHHHHHHHHHHHhhhccchhheeeEEEEeccCC
Confidence 88888888888877777666 35668888888888888776665665543222222 11
Q ss_pred ----ChhHHHHHHHHHHhcCCCcccHHHHHH
Q 012143 304 ----DHRSSGKCLEKAAKLEPNCMSTRYAVA 330 (470)
Q Consensus 304 ----~~~~A~~~~~~a~~~~p~~~~~~~~l~ 330 (470)
..+.-+.+..+.+...|++..+|..+.
T Consensus 198 ~~~~~le~El~yt~~~I~~vP~NeSaWnYL~ 228 (318)
T KOG0530|consen 198 ISKAELERELNYTKDKILLVPNNESAWNYLK 228 (318)
T ss_pred ccHHHHHHHHHHHHHHHHhCCCCccHHHHHH
Confidence 123445667777888888888877543
|
|
| >PF03704 BTAD: Bacterial transcriptional activator domain; InterPro: IPR005158 Found in the DNRI/REDD/AFSR family of regulators, this region of AFSR (P25941 from SWISSPROT) along with the C-terminal region is capable of independently directing actinorhodin production | Back alignment and domain information |
|---|
Probab=97.74 E-value=0.0022 Score=49.92 Aligned_cols=115 Identities=22% Similarity=0.243 Sum_probs=80.0
Q ss_pred HHHHHHHHHhCChhHHHHHHHHHHHHHhhhhcccchhhhHHHHHHhhhccccccccCCCccccccCcccHHHHHHHHHHh
Q 012143 79 FLLGLMYQRLGQPLKAVSSYEKAEEILLRCEADIARPELLSLVQIHHAQCLLPESSGDNSLDKELEPEELEEILSKLKES 158 (470)
Q Consensus 79 ~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~ 158 (470)
...|......|+...++..+++++.+...+-- ++. .. ..-.......++..
T Consensus 10 ~~~a~~~~~~~~~~~~~~~~~~al~ly~G~~l----~~~-----------------~~--------~~W~~~~r~~l~~~ 60 (146)
T PF03704_consen 10 VREARAAARAGDPEEAIELLEEALALYRGDFL----PDL-----------------DD--------EEWVEPERERLREL 60 (146)
T ss_dssp HHHHHHHHHTT-HHHHHHHHHHHHTT--SSTT----GGG-----------------TT--------STTHHHHHHHHHHH
T ss_pred HHHHHHHHHCCCHHHHHHHHHHHHHHhCCCCC----CCC-----------------Cc--------cHHHHHHHHHHHHH
Confidence 33455666778899999999999886422110 000 00 00112333333332
Q ss_pred hhcCccchHHHHHHHHHHHHcCChHHHHHHHHHHhhcCCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHh
Q 012143 159 MQSDTRQAVVWNTLGLILLKSGRLQSSISVLSSLLAVDPNNCDCIGNLGIAYFQSGDMEQSAKCFQDLIL 228 (470)
Q Consensus 159 ~~~~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~ 228 (470)
...+...++..+...|++++|+..+++++..+|.+..++..+..++...|+..+|+..|+++..
T Consensus 61 ------~~~~~~~l~~~~~~~~~~~~a~~~~~~~l~~dP~~E~~~~~lm~~~~~~g~~~~A~~~Y~~~~~ 124 (146)
T PF03704_consen 61 ------YLDALERLAEALLEAGDYEEALRLLQRALALDPYDEEAYRLLMRALAAQGRRAEALRVYERYRR 124 (146)
T ss_dssp ------HHHHHHHHHHHHHHTT-HHHHHHHHHHHHHHSTT-HHHHHHHHHHHHHTT-HHHHHHHHHHHHH
T ss_pred ------HHHHHHHHHHHHHhccCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHCcCHHHHHHHHHHHHH
Confidence 2467778899999999999999999999999999999999999999999999999999998854
|
It is important for the formation of secondary metabolites.; PDB: 2FF4_B 2FEZ_A. |
| >PF02259 FAT: FAT domain; InterPro: IPR003151 The FAT domain is a domain present in the PIK-related kinases | Back alignment and domain information |
|---|
Probab=97.73 E-value=0.028 Score=51.30 Aligned_cols=160 Identities=17% Similarity=0.127 Sum_probs=110.9
Q ss_pred CccchHHHHHHHHHHHHcCChHHHHHHHHHHhhcCC----CChHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCh---
Q 012143 162 DTRQAVVWNTLGLILLKSGRLQSSISVLSSLLAVDP----NNCDCIGNLGIAYFQSGDMEQSAKCFQDLILKDQNHP--- 234 (470)
Q Consensus 162 ~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~----~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~--- 234 (470)
.......|...+.+....|+++.|...+.++...++ ..+.+.+..+.+....|+..+|+..++..+.......
T Consensus 142 ~~~~~~~~l~~a~~aRk~g~~~~A~~~l~~~~~~~~~~~~~~~~v~~e~akllw~~g~~~~Ai~~L~~~~~~~~~~~~~~ 221 (352)
T PF02259_consen 142 PEELAETWLKFAKLARKAGNFQLALSALNRLFQLNPSSESLLPRVFLEYAKLLWAQGEQEEAIQKLRELLKCRLSKNIDS 221 (352)
T ss_pred hhHHHHHHHHHHHHHHHCCCcHHHHHHHHHHhccCCcccCCCcchHHHHHHHHHHcCCHHHHHHHHHHHHHHHhhhcccc
Confidence 445677899999999999999999999999988652 2577888999999999999999999999887211111
Q ss_pred HHHHHHHHHH----Hh------hhcccccccccchhhhhHHHhc------CCHHHHHHHHHHHHhcCCCCHHHHHHHHHH
Q 012143 235 AALINYAALL----LC------KYGSVLAGAGANTGEGACLDQA------SAVNVAKECLLAALKADPKAAHIWANLANA 298 (470)
Q Consensus 235 ~~~~~l~~~~----~~------~~~~~~~~~~~~~~~~~~~~~~------~~~~~A~~~~~~~~~~~p~~~~~~~~la~~ 298 (470)
.....+.... .. ........+..+..+|...... +..++++..|.++++.+|....+|...|..
T Consensus 222 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~l~~a~w~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~k~~~~~a~~ 301 (352)
T PF02259_consen 222 ISNAELKSGLLESLEVISSTNLDKESKELKAKAFLLLAKWLDELYSKLSSESSDEILKYYKEATKLDPSWEKAWHSWALF 301 (352)
T ss_pred ccHHHHhhccccccccccccchhhhhHHHHHHHHHHHHHHHHhhccccccccHHHHHHHHHHHHHhChhHHHHHHHHHHH
Confidence 0000000000 00 0000001123344456666666 889999999999999999999999999887
Q ss_pred HHHcCCh-----------------hHHHHHHHHHHhcCCC
Q 012143 299 YYLTGDH-----------------RSSGKCLEKAAKLEPN 321 (470)
Q Consensus 299 ~~~~g~~-----------------~~A~~~~~~a~~~~p~ 321 (470)
+...=+. ..|+..|-+++...+.
T Consensus 302 ~~~~~~~~~~~~~~~~~~~~~~~~~~ai~~y~~al~~~~~ 341 (352)
T PF02259_consen 302 NDKLLESDPREKEESSQEDRSEYLEQAIEGYLKALSLGSK 341 (352)
T ss_pred HHHHHHhhhhcccccchhHHHHHHHHHHHHHHHHHhhCCC
Confidence 7654221 3477777777777766
|
Members of the family of PIK-related kinases may act as intracellular sensors that govern radial and horizontal pathways [].; GO: 0005515 protein binding |
| >COG5107 RNA14 Pre-mRNA 3'-end processing (cleavage and polyadenylation) factor [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=97.73 E-value=0.031 Score=50.10 Aligned_cols=404 Identities=10% Similarity=-0.027 Sum_probs=198.4
Q ss_pred HHHHHHhcCCCCcchhhhcccchhhhhcChhhHHHHHHHHHHhCCCChhHHHHHHHHHHHhCChhHHHHHHHHHHHHHhh
Q 012143 28 KMDSALEFGVDADGDQSGLGTSSSSREEKVSSLKTGLVHVARKMPKNAHAHFLLGLMYQRLGQPLKAVSSYEKAEEILLR 107 (470)
Q Consensus 28 ~~~~~l~~~p~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~ 107 (470)
.+..-+..+|.+...|+.+-.. +..+|.+++-.+.+++.....|-.+.+|...-.--...++|..-...|-+++...-+
T Consensus 30 rLRerIkdNPtnI~S~fqLiq~-~~tq~s~~~~re~yeq~~~pfp~~~~aw~ly~s~ELA~~df~svE~lf~rCL~k~l~ 108 (660)
T COG5107 30 RLRERIKDNPTNILSYFQLIQY-LETQESMDAEREMYEQLSSPFPIMEHAWRLYMSGELARKDFRSVESLFGRCLKKSLN 108 (660)
T ss_pred HHHHHhhcCchhHHHHHHHHHH-HhhhhhHHHHHHHHHHhcCCCccccHHHHHHhcchhhhhhHHHHHHHHHHHHhhhcc
Confidence 5667778899999999999999 999999999999999999988988888877766666778898888888888875321
Q ss_pred hhcccchhhhHHHHHHhhhccccccccCCCccccccCcccHHHHHHHHHHhhhcCccchHHHHHHHHHHH---------H
Q 012143 108 CEADIARPELLSLVQIHHAQCLLPESSGDNSLDKELEPEELEEILSKLKESMQSDTRQAVVWNTLGLILL---------K 178 (470)
Q Consensus 108 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~---------~ 178 (470)
-+ ...-+++.++-...++. |+ ..-.+-+|.+..-...-.+|.....|...+..+. .
T Consensus 109 ld---LW~lYl~YIRr~n~~~t-----Gq-------~r~~i~~ayefv~~~~~~e~~s~~~W~ey~~fle~~~~~~kwEe 173 (660)
T COG5107 109 LD---LWMLYLEYIRRVNNLIT-----GQ-------KRFKIYEAYEFVLGCAIFEPQSENYWDEYGLFLEYIEELGKWEE 173 (660)
T ss_pred Hh---HHHHHHHHHHhhCcccc-----cc-------hhhhhHHHHHHHHhcccccccccchHHHHHHHHHhccccccHHH
Confidence 00 00111111111111110 00 1111233333333333456777777776666543 2
Q ss_pred cCChHHHHHHHHHHhhcCCCChH-HHHHHHH---------HH----HHcCCHHHHHHHHHHHHhh-------CCCChHH-
Q 012143 179 SGRLQSSISVLSSLLAVDPNNCD-CIGNLGI---------AY----FQSGDMEQSAKCFQDLILK-------DQNHPAA- 236 (470)
Q Consensus 179 ~~~~~~A~~~~~~a~~~~~~~~~-~~~~la~---------~~----~~~g~~~~A~~~~~~~l~~-------~p~~~~~- 236 (470)
+.+.+.-...|.+++...-++.. .|...-. .- ...--|..|...+++...+ +|.+...
T Consensus 174 Qqrid~iR~~Y~ral~tP~~nleklW~dy~~fE~e~N~~TarKfvge~sp~ym~ar~~yqe~~nlt~Gl~v~~~~~~Rt~ 253 (660)
T COG5107 174 QQRIDKIRNGYMRALQTPMGNLEKLWKDYENFELELNKITARKFVGETSPIYMSARQRYQEIQNLTRGLSVKNPINLRTA 253 (660)
T ss_pred HHHHHHHHHHHHHHHcCccccHHHHHHHHHHHHHHHHHHHHHHHhcccCHHHHHHHHHHHHHHHHhccccccCchhhhhh
Confidence 34455666677777765433321 1111110 00 1111244555555554432 1211111
Q ss_pred ----------HHHHHHHHHhhhcccccccccchhhhhHHHhcCCH-H-HHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCC
Q 012143 237 ----------LINYAALLLCKYGSVLAGAGANTGEGACLDQASAV-N-VAKECLLAALKADPKAAHIWANLANAYYLTGD 304 (470)
Q Consensus 237 ----------~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~-~A~~~~~~~~~~~p~~~~~~~~la~~~~~~g~ 304 (470)
|.+...--.. + -+.-.|+. . .---.+++++..-|-.+++|+.-.......++
T Consensus 254 nK~~r~s~S~WlNwIkwE~e--n--------------~l~L~~~~~~qRi~y~~~q~~~y~~~~~evw~dys~Y~~~isd 317 (660)
T COG5107 254 NKAARTSDSNWLNWIKWEME--N--------------GLKLGGRPHEQRIHYIHNQILDYFYYAEEVWFDYSEYLIGISD 317 (660)
T ss_pred ccccccccchhhhHhhHhhc--C--------------CcccCCCcHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHhhccH
Confidence 1111111000 0 00001111 1 11223455555555566666666666666666
Q ss_pred hhHHHHHHHHHHhcCCCcccHHHHHHHHH-----HHHhhhccCch-HHhhhhHHHHHHHhhcCCCCCC------------
Q 012143 305 HRSSGKCLEKAAKLEPNCMSTRYAVAVSR-----IKDAERSQEPT-EQLSWAGNEMASILREGDPVQI------------ 366 (470)
Q Consensus 305 ~~~A~~~~~~a~~~~p~~~~~~~~l~~~~-----~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~------------ 366 (470)
-+.|+....+++...|.-. +.++... -.......+.. ..+...+..............+
T Consensus 318 ~q~al~tv~rg~~~spsL~---~~lse~yel~nd~e~v~~~fdk~~q~L~r~ys~~~s~~~s~~D~N~e~~~Ell~kr~~ 394 (660)
T COG5107 318 KQKALKTVERGIEMSPSLT---MFLSEYYELVNDEEAVYGCFDKCTQDLKRKYSMGESESASKVDNNFEYSKELLLKRIN 394 (660)
T ss_pred HHHHHHHHHhcccCCCchh---eeHHHHHhhcccHHHHhhhHHHHHHHHHHHHhhhhhhhhccccCCccccHHHHHHHHh
Confidence 6666666666665555511 1110000 00000000000 0000000000000000000000
Q ss_pred CcHHHHHHHHHHHhccccHHHHHHHHHHHhcch--hhhhHhhHHH-HHHHhccHHHHHHHHHHHHhcCCCcHHHHHHHHH
Q 012143 367 EPPIAWAGFAAVQKTHHEVAAAFETEENELSKM--EECAGAGESA-FLDQASAVNVAKECLLAALKADPKAAHIWANLAN 443 (470)
Q Consensus 367 ~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~--~~~~~~~l~~-~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~ 443 (470)
....+|...-+.-.+..-.+.|...|.+.-+.. ..+++..-|. -+...|++.-|-..|+--+...|+++..-...-.
T Consensus 395 k~t~v~C~~~N~v~r~~Gl~aaR~~F~k~rk~~~~~h~vyi~~A~~E~~~~~d~~ta~~ifelGl~~f~d~~~y~~kyl~ 474 (660)
T COG5107 395 KLTFVFCVHLNYVLRKRGLEAARKLFIKLRKEGIVGHHVYIYCAFIEYYATGDRATAYNIFELGLLKFPDSTLYKEKYLL 474 (660)
T ss_pred hhhhHHHHHHHHHHHHhhHHHHHHHHHHHhccCCCCcceeeeHHHHHHHhcCCcchHHHHHHHHHHhCCCchHHHHHHHH
Confidence 011233333334444445566666666544322 1222222221 2445677777777777777777777666555556
Q ss_pred HHHHcCChHHHHHHHHHHHHhhc
Q 012143 444 AYYLTGDHRSSGKCLEKVLMVYC 466 (470)
Q Consensus 444 ~~~~~g~~~~A~~~~~~al~~~~ 466 (470)
.+...++-..|...|+++++...
T Consensus 475 fLi~inde~naraLFetsv~r~~ 497 (660)
T COG5107 475 FLIRINDEENARALFETSVERLE 497 (660)
T ss_pred HHHHhCcHHHHHHHHHHhHHHHH
Confidence 66777777777777777666553
|
|
| >PF08424 NRDE-2: NRDE-2, necessary for RNA interference; InterPro: IPR013633 This is domain is found in eukaryotic proteins of unknown function | Back alignment and domain information |
|---|
Probab=97.63 E-value=0.0068 Score=54.07 Aligned_cols=149 Identities=14% Similarity=0.136 Sum_probs=116.7
Q ss_pred HHHHHhhhcCccchHHHHHHHHHHHHcCC------------hHHHHHHHHHHhhcCCCChHHHHHHHHHHHHcCCHHHHH
Q 012143 153 SKLKESMQSDTRQAVVWNTLGLILLKSGR------------LQSSISVLSSLLAVDPNNCDCIGNLGIAYFQSGDMEQSA 220 (470)
Q Consensus 153 ~~~~~~~~~~p~~~~~~~~l~~~~~~~~~------------~~~A~~~~~~a~~~~~~~~~~~~~la~~~~~~g~~~~A~ 220 (470)
..+++.++.+|.+.++|..+....-..-. .+.-+..|++|++.+|++...+..+-.+..+..+.++..
T Consensus 6 ~el~~~v~~~P~di~~Wl~li~~Qd~~~~~~~~~~~~~~a~~E~klsilerAL~~np~~~~L~l~~l~~~~~~~~~~~l~ 85 (321)
T PF08424_consen 6 AELNRRVRENPHDIEAWLELIEFQDELFRLQSSSKAERRALAERKLSILERALKHNPDSERLLLGYLEEGEKVWDSEKLA 85 (321)
T ss_pred HHHHHHHHhCcccHHHHHHHHHHHHHhccccccchhhHHHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhCCHHHHH
Confidence 45778889999999999998876655432 456788999999999999999999999999999999999
Q ss_pred HHHHHHHhhCCCChHHHHHHHHHHHhhhcccccccccchhhhhHHHhcCCHHHHHHHHHHHHhcCC--------------
Q 012143 221 KCFQDLILKDQNHPAALINYAALLLCKYGSVLAGAGANTGEGACLDQASAVNVAKECLLAALKADP-------------- 286 (470)
Q Consensus 221 ~~~~~~l~~~p~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~p-------------- 286 (470)
+.+++++..+|++...|..+....... ...-.+......|.+++..-.
T Consensus 86 ~~we~~l~~~~~~~~LW~~yL~~~q~~------------------~~~f~v~~~~~~y~~~l~~L~~~~~~~~~~~~~~~ 147 (321)
T PF08424_consen 86 KKWEELLFKNPGSPELWREYLDFRQSN------------------FASFTVSDVRDVYEKCLRALSRRRSGRMTSHPDLP 147 (321)
T ss_pred HHHHHHHHHCCCChHHHHHHHHHHHHH------------------hccCcHHHHHHHHHHHHHHHHHhhccccccccchh
Confidence 999999999999999998777666531 122345566666666554310
Q ss_pred ----CCHHHHHHHHHHHHHcCChhHHHHHHHHHHhcC
Q 012143 287 ----KAAHIWANLANAYYLTGDHRSSGKCLEKAAKLE 319 (470)
Q Consensus 287 ----~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~ 319 (470)
....+...+.......|..+.|+..++-.++.+
T Consensus 148 ~~e~~~l~v~~r~~~fl~~aG~~E~Ava~~Qa~lE~n 184 (321)
T PF08424_consen 148 ELEEFMLYVFLRLCRFLRQAGYTERAVALWQALLEFN 184 (321)
T ss_pred hHHHHHHHHHHHHHHHHHHCCchHHHHHHHHHHHHHH
Confidence 023456677788889999999999999999876
|
|
| >KOG1308 consensus Hsp70-interacting protein Hip/Transient component of progesterone receptor complexes and an Hsp70-binding protein [Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=97.63 E-value=2.1e-05 Score=66.81 Aligned_cols=91 Identities=14% Similarity=0.195 Sum_probs=85.7
Q ss_pred ccCcccHHHHHHHHHHhhhcCccchHHHHHHHHHHHHcCChHHHHHHHHHHhhcCCCChHHHHHHHHHHHHcCCHHHHHH
Q 012143 142 ELEPEELEEILSKLKESMQSDTRQAVVWNTLGLILLKSGRLQSSISVLSSLLAVDPNNCDCIGNLGIAYFQSGDMEQSAK 221 (470)
Q Consensus 142 ~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~la~~~~~~g~~~~A~~ 221 (470)
.+..|.++.|++.|..++.++|.....+...+.++..++++..|+..+..+++++|+...-+-..|.....+|+|.+|..
T Consensus 124 Aln~G~~~~ai~~~t~ai~lnp~~a~l~~kr~sv~lkl~kp~~airD~d~A~ein~Dsa~~ykfrg~A~rllg~~e~aa~ 203 (377)
T KOG1308|consen 124 ALNDGEFDTAIELFTSAIELNPPLAILYAKRASVFLKLKKPNAAIRDCDFAIEINPDSAKGYKFRGYAERLLGNWEEAAH 203 (377)
T ss_pred HhcCcchhhhhcccccccccCCchhhhcccccceeeeccCCchhhhhhhhhhccCcccccccchhhHHHHHhhchHHHHH
Confidence 34678899999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHhhCCC
Q 012143 222 CFQDLILKDQN 232 (470)
Q Consensus 222 ~~~~~l~~~p~ 232 (470)
.+..+.+++-+
T Consensus 204 dl~~a~kld~d 214 (377)
T KOG1308|consen 204 DLALACKLDYD 214 (377)
T ss_pred HHHHHHhcccc
Confidence 99999987643
|
|
| >PF13174 TPR_6: Tetratricopeptide repeat; PDB: 3QKY_A 2XEV_A 3URZ_B 2Q7F_A | Back alignment and domain information |
|---|
Probab=97.60 E-value=0.00012 Score=40.01 Aligned_cols=33 Identities=24% Similarity=0.382 Sum_probs=24.5
Q ss_pred HHHHHHHHHHHHcCChHHHHHHHHHHHHhhccC
Q 012143 436 HIWANLANAYYLTGDHRSSGKCLEKVLMVYCSS 468 (470)
Q Consensus 436 ~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~ 468 (470)
++++.+|.++...|++++|+..|+++++.+|++
T Consensus 1 ~a~~~~a~~~~~~g~~~~A~~~~~~~~~~~P~s 33 (33)
T PF13174_consen 1 DALYRLARCYYKLGDYDEAIEYFQRLIKRYPDS 33 (33)
T ss_dssp HHHHHHHHHHHHHCHHHHHHHHHHHHHHHSTTS
T ss_pred CHHHHHHHHHHHccCHHHHHHHHHHHHHHCcCC
Confidence 356777777777777777777777777777754
|
|
| >KOG0551 consensus Hsp90 co-chaperone CNS1 (contains TPR repeats) [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=97.57 E-value=0.00019 Score=60.91 Aligned_cols=92 Identities=11% Similarity=0.179 Sum_probs=82.6
Q ss_pred ccCcccHHHHHHHHHHhhhcCccc----hHHHHHHHHHHHHcCChHHHHHHHHHHhhcCCCChHHHHHHHHHHHHcCCHH
Q 012143 142 ELEPEELEEILSKLKESMQSDTRQ----AVVWNTLGLILLKSGRLQSSISVLSSLLAVDPNNCDCIGNLGIAYFQSGDME 217 (470)
Q Consensus 142 ~~~~~~~~~A~~~~~~~~~~~p~~----~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~la~~~~~~g~~~ 217 (470)
+++..+|..|+..|.+.+...-.+ +..|.+++.+....|+|..|+....+++.++|.+..+++.-+.|++.+.++.
T Consensus 91 ~fK~Kryk~A~~~Yt~Glk~kc~D~dlnavLY~NRAAa~~~l~NyRs~l~Dcs~al~~~P~h~Ka~~R~Akc~~eLe~~~ 170 (390)
T KOG0551|consen 91 YFKEKRYKDAVESYTEGLKKKCADPDLNAVLYTNRAAAQLYLGNYRSALNDCSAALKLKPTHLKAYIRGAKCLLELERFA 170 (390)
T ss_pred HHHhhhHHHHHHHHHHHHhhcCCCccHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHhcCcchhhhhhhhhHHHHHHHHHH
Confidence 778899999999999999875544 4578899999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHhhCCCC
Q 012143 218 QSAKCFQDLILKDQNH 233 (470)
Q Consensus 218 ~A~~~~~~~l~~~p~~ 233 (470)
+|....+..+.++...
T Consensus 171 ~a~nw~ee~~~~d~e~ 186 (390)
T KOG0551|consen 171 EAVNWCEEGLQIDDEA 186 (390)
T ss_pred HHHHHHhhhhhhhHHH
Confidence 9999999987765443
|
|
| >PF13176 TPR_7: Tetratricopeptide repeat; PDB: 3SF4_C 3RO3_A 3RO2_A | Back alignment and domain information |
|---|
Probab=97.56 E-value=0.00019 Score=40.08 Aligned_cols=31 Identities=23% Similarity=0.256 Sum_probs=23.9
Q ss_pred HHHHHHHHHHHcCChHHHHHHHHHHHHhhcc
Q 012143 437 IWANLANAYYLTGDHRSSGKCLEKVLMVYCS 467 (470)
Q Consensus 437 ~~~~la~~~~~~g~~~~A~~~~~~al~~~~~ 467 (470)
+|.+||.+|...|++++|+++|++++.+-.+
T Consensus 1 al~~Lg~~~~~~g~~~~Ai~~y~~aL~l~~~ 31 (36)
T PF13176_consen 1 ALNNLGRIYRQQGDYEKAIEYYEQALALARD 31 (36)
T ss_dssp HHHHHHHHHHHCT-HHHHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHcCCHHHHHHHHHHHHHhccc
Confidence 4678888888888888888888888766543
|
|
| >KOG0551 consensus Hsp90 co-chaperone CNS1 (contains TPR repeats) [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=97.56 E-value=0.0017 Score=55.28 Aligned_cols=93 Identities=13% Similarity=0.013 Sum_probs=74.1
Q ss_pred hhhhhhhhhhhHHHHHHHHHHHHhcCCCC----cchhhhcccchhhhhcChhhHHHHHHHHHHhCCCChhHHHHHHHHHH
Q 012143 11 EGKKINKLGKCRSRISSKMDSALEFGVDA----DGDQSGLGTSSSSREEKVSSLKTGLVHVARKMPKNAHAHFLLGLMYQ 86 (470)
Q Consensus 11 ~~~~~~~~g~~~~a~~~~~~~~l~~~p~~----~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~l~~~~~ 86 (470)
+|+.+++..+++.|+ ..|.+.|.....+ +..|.+.+.+ ....|+|..++.-..+++..+|.+..+++.=+.|++
T Consensus 87 eGN~~fK~Kryk~A~-~~Yt~Glk~kc~D~dlnavLY~NRAAa-~~~l~NyRs~l~Dcs~al~~~P~h~Ka~~R~Akc~~ 164 (390)
T KOG0551|consen 87 EGNEYFKEKRYKDAV-ESYTEGLKKKCADPDLNAVLYTNRAAA-QLYLGNYRSALNDCSAALKLKPTHLKAYIRGAKCLL 164 (390)
T ss_pred HhHHHHHhhhHHHHH-HHHHHHHhhcCCCccHHHHHHhhHHHH-HHHHHHHHHHHHHHHHHHhcCcchhhhhhhhhHHHH
Confidence 678888888888888 8888888654333 3356677877 888888888888888888888888888888888888
Q ss_pred HhCChhHHHHHHHHHHHHH
Q 012143 87 RLGQPLKAVSSYEKAEEIL 105 (470)
Q Consensus 87 ~~g~~~~A~~~~~~al~~~ 105 (470)
...++++|..+.+..+.++
T Consensus 165 eLe~~~~a~nw~ee~~~~d 183 (390)
T KOG0551|consen 165 ELERFAEAVNWCEEGLQID 183 (390)
T ss_pred HHHHHHHHHHHHhhhhhhh
Confidence 8888888888888877653
|
|
| >PF04910 Tcf25: Transcriptional repressor TCF25; InterPro: IPR006994 This entry appears to represent a novel family of basic helix-loop-helix (bHLH) proteins that control differentiation and development of a variety of organs [, ] | Back alignment and domain information |
|---|
Probab=97.55 E-value=0.0057 Score=55.14 Aligned_cols=147 Identities=13% Similarity=0.077 Sum_probs=114.8
Q ss_pred HhhhcCccchHHHHHHHHHHHHcCChHHHHHHHHHHhhc--------------CCC------------Ch---HHHHHHH
Q 012143 157 ESMQSDTRQAVVWNTLGLILLKSGRLQSSISVLSSLLAV--------------DPN------------NC---DCIGNLG 207 (470)
Q Consensus 157 ~~~~~~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~--------------~~~------------~~---~~~~~la 207 (470)
..++.+|.+.+++..++.++..+|+...|.+.+++|+-. ++. |. .+.+...
T Consensus 31 ~ll~~~PyHidtLlqls~v~~~~gd~~~A~~lleRALf~~e~~~~~~F~~~~~~~~~g~~rL~~~~~eNR~fflal~r~i 110 (360)
T PF04910_consen 31 NLLQKNPYHIDTLLQLSEVYRQQGDHAQANDLLERALFAFERAFHPSFSPFRSNLTSGNCRLDYRRPENRQFFLALFRYI 110 (360)
T ss_pred HHHHHCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHHHHHhhhhhcccccCccccCCccccchHHHHHHHHHH
Confidence 335779999999999999999999999999999998632 111 11 2566777
Q ss_pred HHHHHcCCHHHHHHHHHHHHhhCCC-ChHHHHHHHHHHHhhhcccccccccchhhhhHHHhcCCHHHHHHHHHHHHhcCC
Q 012143 208 IAYFQSGDMEQSAKCFQDLILKDQN-HPAALINYAALLLCKYGSVLAGAGANTGEGACLDQASAVNVAKECLLAALKADP 286 (470)
Q Consensus 208 ~~~~~~g~~~~A~~~~~~~l~~~p~-~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~p 286 (470)
..+.+.|-+..|.+..+-.+.++|. ++-........+.- +.++++--++.++.......
T Consensus 111 ~~L~~RG~~rTAlE~~KlLlsLdp~~DP~g~ll~ID~~AL--------------------rs~~y~~Li~~~~~~~~~~~ 170 (360)
T PF04910_consen 111 QSLGRRGCWRTALEWCKLLLSLDPDEDPLGVLLFIDYYAL--------------------RSRQYQWLIDFSESPLAKCY 170 (360)
T ss_pred HHHHhcCcHHHHHHHHHHHHhcCCCCCcchhHHHHHHHHH--------------------hcCCHHHHHHHHHhHhhhhh
Confidence 8888999999999999999999999 77665555555542 67888877887777655211
Q ss_pred -----CCHHHHHHHHHHHHHcCCh---------------hHHHHHHHHHHhcCCCcc
Q 012143 287 -----KAAHIWANLANAYYLTGDH---------------RSSGKCLEKAAKLEPNCM 323 (470)
Q Consensus 287 -----~~~~~~~~la~~~~~~g~~---------------~~A~~~~~~a~~~~p~~~ 323 (470)
.-|..-+.++.+++..++- +.|...+.+|+...|.-.
T Consensus 171 ~~~~~~lPn~a~S~aLA~~~l~~~~~~~~~~~~~~~~~~~~A~~~L~~Ai~~fP~vl 227 (360)
T PF04910_consen 171 RNWLSLLPNFAFSIALAYFRLEKEESSQSSAQSGRSENSESADEALQKAILRFPWVL 227 (360)
T ss_pred hhhhhhCccHHHHHHHHHHHhcCccccccccccccccchhHHHHHHHHHHHHhHHHH
Confidence 1346778888889999888 899999999999988743
|
Human Nulp1 (Q2MK75 from SWISSPROT) is a basic helix-loop-helix protein expressed broadly during early embryonic organogenesis. Over expression of human Nulp1 in COS-7 cells inhibits the transcriptional activity of serum response factor (SRF), suggesting that Nulp1 may act as a novel bHLH transcriptional repressor in the SRF signalling pathway to mediate cellular functions []. |
| >PF03704 BTAD: Bacterial transcriptional activator domain; InterPro: IPR005158 Found in the DNRI/REDD/AFSR family of regulators, this region of AFSR (P25941 from SWISSPROT) along with the C-terminal region is capable of independently directing actinorhodin production | Back alignment and domain information |
|---|
Probab=97.54 E-value=0.0046 Score=48.16 Aligned_cols=91 Identities=18% Similarity=0.169 Sum_probs=69.0
Q ss_pred HHHHHHHcCChHHHHHHHHHHhhcCCCC----------------------hHHHHHHHHHHHHcCCHHHHHHHHHHHHhh
Q 012143 172 LGLILLKSGRLQSSISVLSSLLAVDPNN----------------------CDCIGNLGIAYFQSGDMEQSAKCFQDLILK 229 (470)
Q Consensus 172 l~~~~~~~~~~~~A~~~~~~a~~~~~~~----------------------~~~~~~la~~~~~~g~~~~A~~~~~~~l~~ 229 (470)
.|......|+...++..+++++.+.... ..+...++..+...|++++|+..+++++..
T Consensus 12 ~a~~~~~~~~~~~~~~~~~~al~ly~G~~l~~~~~~~W~~~~r~~l~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~l~~ 91 (146)
T PF03704_consen 12 EARAAARAGDPEEAIELLEEALALYRGDFLPDLDDEEWVEPERERLRELYLDALERLAEALLEAGDYEEALRLLQRALAL 91 (146)
T ss_dssp HHHHHHHTT-HHHHHHHHHHHHTT--SSTTGGGTTSTTHHHHHHHHHHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHH
T ss_pred HHHHHHHCCCHHHHHHHHHHHHHHhCCCCCCCCCccHHHHHHHHHHHHHHHHHHHHHHHHHHhccCHHHHHHHHHHHHhc
Confidence 3555566677777888888877763211 235677888889999999999999999999
Q ss_pred CCCChHHHHHHHHHHHhhhcccccccccchhhhhHHHhcCCHHHHHHHHHHHHh
Q 012143 230 DQNHPAALINYAALLLCKYGSVLAGAGANTGEGACLDQASAVNVAKECLLAALK 283 (470)
Q Consensus 230 ~p~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~ 283 (470)
+|.+...+..+..++. ..|+...|+..|++...
T Consensus 92 dP~~E~~~~~lm~~~~---------------------~~g~~~~A~~~Y~~~~~ 124 (146)
T PF03704_consen 92 DPYDEEAYRLLMRALA---------------------AQGRRAEALRVYERYRR 124 (146)
T ss_dssp STT-HHHHHHHHHHHH---------------------HTT-HHHHHHHHHHHHH
T ss_pred CCCCHHHHHHHHHHHH---------------------HCcCHHHHHHHHHHHHH
Confidence 9999999999988887 79999999999987754
|
It is important for the formation of secondary metabolites.; PDB: 2FF4_B 2FEZ_A. |
| >PF13181 TPR_8: Tetratricopeptide repeat; PDB: 3GW4_B 3MA5_C 2KCV_A 2KCL_A 3FP3_A 3LCA_A 3FP4_A 3FP2_A 1W3B_B 1ELW_A | Back alignment and domain information |
|---|
Probab=97.54 E-value=0.00021 Score=39.35 Aligned_cols=30 Identities=30% Similarity=0.409 Sum_probs=17.6
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHhhCC
Q 012143 202 CIGNLGIAYFQSGDMEQSAKCFQDLILKDQ 231 (470)
Q Consensus 202 ~~~~la~~~~~~g~~~~A~~~~~~~l~~~p 231 (470)
+|+.+|.+|..+|++++|+..|+++++++|
T Consensus 3 ~~~~lg~~y~~~~~~~~A~~~~~~a~~~~~ 32 (34)
T PF13181_consen 3 AYYNLGKIYEQLGDYEEALEYFEKALELNP 32 (34)
T ss_dssp HHHHHHHHHHHTTSHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHhhCC
Confidence 455555566666666666666666555555
|
... |
| >COG0790 FOG: TPR repeat, SEL1 subfamily [General function prediction only] | Back alignment and domain information |
|---|
Probab=97.51 E-value=0.044 Score=48.54 Aligned_cols=155 Identities=17% Similarity=0.066 Sum_probs=93.6
Q ss_pred cCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHH----cCChhHHHHHHHHHHhcCCCcc-cHHHHHHHHHHHHhhhccC
Q 012143 268 ASAVNVAKECLLAALKADPKAAHIWANLANAYYL----TGDHRSSGKCLEKAAKLEPNCM-STRYAVAVSRIKDAERSQE 342 (470)
Q Consensus 268 ~~~~~~A~~~~~~~~~~~p~~~~~~~~la~~~~~----~g~~~~A~~~~~~a~~~~p~~~-~~~~~l~~~~~~~~~~~~~ 342 (470)
..+..+|..+|..+. ....+...+.+|.+|.. ..+..+|..+|+++....-... .+.+.++.....-.
T Consensus 90 ~~~~~~A~~~~~~~a--~~g~~~a~~~lg~~~~~G~gv~~d~~~A~~~~~~Aa~~g~~~a~~~~~~l~~~~~~g~----- 162 (292)
T COG0790 90 SRDKTKAADWYRCAA--ADGLAEALFNLGLMYANGRGVPLDLVKALKYYEKAAKLGNVEAALAMYRLGLAYLSGL----- 162 (292)
T ss_pred cccHHHHHHHHHHHh--hcccHHHHHhHHHHHhcCCCcccCHHHHHHHHHHHHHcCChhHHHHHHHHHHHHHcCh-----
Confidence 344666777666433 34456666667776665 3467777777777776543321 11222221111000
Q ss_pred chHHhhhhHHHHHHHhhcCCCCCCCcHHHHHHHHHHHhccccHHHHHHHHHHHhcchhhhhHhhHHHHHHH----hccHH
Q 012143 343 PTEQLSWAGNEMASILREGDPVQIEPPIAWAGFAAVQKTHHEVAAAFETEENELSKMEECAGAGESAFLDQ----ASAVN 418 (470)
Q Consensus 343 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~l~~~~~~----~~~~~ 418 (470)
.......+...|+..|.++.......+.+.+|.+|.. ..++.
T Consensus 163 ----------------------------------~~~~~~~~~~~A~~~~~~aa~~~~~~a~~~lg~~y~~G~Gv~~d~~ 208 (292)
T COG0790 163 ----------------------------------QALAVAYDDKKALYLYRKAAELGNPDAQLLLGRMYEKGLGVPRDLK 208 (292)
T ss_pred ----------------------------------hhhcccHHHHhHHHHHHHHHHhcCHHHHHHHHHHHHcCCCCCcCHH
Confidence 0000001224566666666666677777888877754 34789
Q ss_pred HHHHHHHHHHhcCCCcHHHHHHHHHHHHHcC---------------ChHHHHHHHHHHHHhhc
Q 012143 419 VAKECLLAALKADPKAAHIWANLANAYYLTG---------------DHRSSGKCLEKVLMVYC 466 (470)
Q Consensus 419 ~A~~~~~~al~~~p~~~~~~~~la~~~~~~g---------------~~~~A~~~~~~al~~~~ 466 (470)
+|..+|.++-+... ..+.+.++ ++...| +...|...+.++.....
T Consensus 209 ~A~~wy~~Aa~~g~--~~a~~~~~-~~~~~g~g~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~ 268 (292)
T COG0790 209 KAFRWYKKAAEQGD--GAACYNLG-LMYLNGEGVKKAAFLTAAKEEDKKQALEWLQKACELGF 268 (292)
T ss_pred HHHHHHHHHHHCCC--HHHHHHHH-HHHhcCCCchhhhhcccccCCCHHHHHHHHHHHHHcCC
Confidence 99999999988866 88888888 666665 77788888887766543
|
|
| >PF10345 Cohesin_load: Cohesin loading factor; InterPro: IPR019440 Cohesin loading factor is a conserved protein that has been characterised in fungi | Back alignment and domain information |
|---|
Probab=97.51 E-value=0.12 Score=50.97 Aligned_cols=297 Identities=15% Similarity=0.056 Sum_probs=171.2
Q ss_pred HHHHHHHHHhhhcCcc----chHHHHHHHHHHH-HcCChHHHHHHHHHHhhcCCC--Ch----HHHHHHHHHHHHcCCHH
Q 012143 149 EEILSKLKESMQSDTR----QAVVWNTLGLILL-KSGRLQSSISVLSSLLAVDPN--NC----DCIGNLGIAYFQSGDME 217 (470)
Q Consensus 149 ~~A~~~~~~~~~~~p~----~~~~~~~l~~~~~-~~~~~~~A~~~~~~a~~~~~~--~~----~~~~~la~~~~~~g~~~ 217 (470)
..|+.+++-+++..+- .+.+.+.+|.++. ...+++.|..++.+++.+... .. .+.+.++.++.+.+...
T Consensus 38 ~~ai~CL~~~~~~~~l~p~~ea~~~l~la~iL~~eT~n~~~Ae~~L~k~~~l~~~~~~~d~k~~~~~ll~~i~~~~~~~~ 117 (608)
T PF10345_consen 38 ATAIKCLEAVLKQFKLSPRQEARVRLRLASILLEETENLDLAETYLEKAILLCERHRLTDLKFRCQFLLARIYFKTNPKA 117 (608)
T ss_pred HHHHHHHHHHhccCCCCHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhccccchHHHHHHHHHHHHHHHHhcCHHH
Confidence 5678888887743221 2457888999988 789999999999999887643 22 24567788888888777
Q ss_pred HHHHHHHHHHhhCCCC-hHHHHHHHHHHHhhhcccccccccchhhhhHHHhcCCHHHHHHHHHHHHhcC--CCCHHHH--
Q 012143 218 QSAKCFQDLILKDQNH-PAALINYAALLLCKYGSVLAGAGANTGEGACLDQASAVNVAKECLLAALKAD--PKAAHIW-- 292 (470)
Q Consensus 218 ~A~~~~~~~l~~~p~~-~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~--p~~~~~~-- 292 (470)
|...+++.++..... ...|...-..+. .......+++..|++.++...... +.++.+.
T Consensus 118 -a~~~l~~~I~~~~~~~~~~w~~~frll~----------------~~l~~~~~d~~~Al~~L~~~~~~a~~~~d~~~~v~ 180 (608)
T PF10345_consen 118 -ALKNLDKAIEDSETYGHSAWYYAFRLLK----------------IQLALQHKDYNAALENLQSIAQLANQRGDPAVFVL 180 (608)
T ss_pred -HHHHHHHHHHHHhccCchhHHHHHHHHH----------------HHHHHhcccHHHHHHHHHHHHHHhhhcCCHHHHHH
Confidence 999999998765441 112222222211 111112379999999999988765 3444332
Q ss_pred --HHHHHHHHHcCChhHHHHHHHHHHhc------CCCccc----HHHHHHH--HHHH--HhhhccCchHHhhhhHHHHHH
Q 012143 293 --ANLANAYYLTGDHRSSGKCLEKAAKL------EPNCMS----TRYAVAV--SRIK--DAERSQEPTEQLSWAGNEMAS 356 (470)
Q Consensus 293 --~~la~~~~~~g~~~~A~~~~~~a~~~------~p~~~~----~~~~l~~--~~~~--~~~~~~~~~~~~~~~~~~~~~ 356 (470)
...+.++...+..+++++..+++... +|+... ++..+.. ..+. +..........+...+.....
T Consensus 181 ~~l~~~~l~l~~~~~~d~~~~l~~~~~~~~~~q~~~~~~~~qL~~~~lll~l~~~l~~~~~~~~~~~L~~lq~~~~~~~~ 260 (608)
T PF10345_consen 181 ASLSEALLHLRRGSPDDVLELLQRAIAQARSLQLDPSVHIPQLKALFLLLDLCCSLQQGDVKNSKQKLKQLQQFLDEIKK 260 (608)
T ss_pred HHHHHHHHHhcCCCchhHHHHHHHHHHHHhhcccCCCCCcHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhhc
Confidence 33466677778888888888877432 222211 1111110 1111 101111112222222222222
Q ss_pred Hh--hc---CCCC--C-----------C--------C--cHHHHHHHHHHHhccccHHHHHHHHHHHhcchhh-------
Q 012143 357 IL--RE---GDPV--Q-----------I--------E--PPIAWAGFAAVQKTHHEVAAAFETEENELSKMEE------- 401 (470)
Q Consensus 357 ~~--~~---~~~~--~-----------~--------~--~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~------- 401 (470)
.. .. ...+ . + . ...+|..-|......+..++|.+.+.+++.....
T Consensus 261 ~~~w~~~~~d~~i~l~~~~~~~~~~~~~~~f~wl~~~~l~~L~y~lS~l~~~~~~~~~ks~k~~~k~l~~i~~~~~~~~~ 340 (608)
T PF10345_consen 261 SPSWPSWDEDGSIPLNIGEGSSNSGGTPLVFSWLPKEELYALVYFLSGLHNLYKGSMDKSEKFLEKALKQIEKLKIKSPS 340 (608)
T ss_pred CccCCCcCCCeeEEeecccccccCCCceeEEeecCHHHHHHHHHHHHHHHHhhccCchHHHHHHHHHHHHHHHhhccCCC
Confidence 21 00 0000 0 0 0 0112333344455555555666555553321000
Q ss_pred ---------------------hhHhhHHHHHHHhccHHHHHHHHHHHHhcC---CC------cHHHHHHHHHHHHHcCCh
Q 012143 402 ---------------------CAGAGESAFLDQASAVNVAKECLLAALKAD---PK------AAHIWANLANAYYLTGDH 451 (470)
Q Consensus 402 ---------------------~~~~~l~~~~~~~~~~~~A~~~~~~al~~~---p~------~~~~~~~la~~~~~~g~~ 451 (470)
...+..+.+.+-.+++..|....+.+.... |. .+.+++..|..+...|+.
T Consensus 341 ~~~~sl~~~~~~~~~~~~l~~~~~~y~~~~~~~~~~~~~a~~~l~~~~~~~~~~~~~~~~~~~~~~~yL~gl~~q~~g~l 420 (608)
T PF10345_consen 341 APSESLSEASERIQWLRYLQCYLLFYQIWCNFIRGDWSKATQELEFMRQLCQRSPSKLYESLYPLLHYLLGLYYQSTGDL 420 (608)
T ss_pred CCCcCHHHHHHhHHHHHHHHHHHHHHHHHHHHHCcCHHHHHHHHHHHHHHHhcCccchhhhhhHHHHHHHHHHHHHcCCH
Confidence 123366667778899999999888777542 22 377889999999999999
Q ss_pred HHHHHHHHHHH
Q 012143 452 RSSGKCLEKVL 462 (470)
Q Consensus 452 ~~A~~~~~~al 462 (470)
+.|..+|.+..
T Consensus 421 ~~A~~~y~~~~ 431 (608)
T PF10345_consen 421 EAALYQYQKPR 431 (608)
T ss_pred HHHHHHHhhhH
Confidence 99999998544
|
It is associated with the cohesin complex and is required in G1 for cohesin binding to chromosomes, but is dispensable in G2 when cohesion has been established. It is often referred to as Ssl3 in Schizosaccharomyces pombe (Fission yeast), and Scc4 in Saccharomyces cerevisiae (Baker's yeast). It complexes with Mis4 []. |
| >PF13181 TPR_8: Tetratricopeptide repeat; PDB: 3GW4_B 3MA5_C 2KCV_A 2KCL_A 3FP3_A 3LCA_A 3FP4_A 3FP2_A 1W3B_B 1ELW_A | Back alignment and domain information |
|---|
Probab=97.49 E-value=0.00021 Score=39.41 Aligned_cols=32 Identities=31% Similarity=0.470 Sum_probs=27.3
Q ss_pred HHHHHHHHHHHHcCChhHHHHHHHHHHhcCCC
Q 012143 290 HIWANLANAYYLTGDHRSSGKCLEKAAKLEPN 321 (470)
Q Consensus 290 ~~~~~la~~~~~~g~~~~A~~~~~~a~~~~p~ 321 (470)
.+|+.+|.+|..+|++++|+.+|+++++++|+
T Consensus 2 ~~~~~lg~~y~~~~~~~~A~~~~~~a~~~~~~ 33 (34)
T PF13181_consen 2 EAYYNLGKIYEQLGDYEEALEYFEKALELNPD 33 (34)
T ss_dssp HHHHHHHHHHHHTTSHHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCC
Confidence 56888888898999999999999988888874
|
... |
| >KOG1258 consensus mRNA processing protein [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=97.48 E-value=0.093 Score=49.06 Aligned_cols=300 Identities=13% Similarity=0.027 Sum_probs=164.7
Q ss_pred ccHHHHHHHHHHhhhcCccchHHHHHHHHHHHHcCChHHHHHHHHHHhhcCCCChHHHHHHHH-HHHHcCCHHHHHHHHH
Q 012143 146 EELEEILSKLKESMQSDTRQAVVWNTLGLILLKSGRLQSSISVLSSLLAVDPNNCDCIGNLGI-AYFQSGDMEQSAKCFQ 224 (470)
Q Consensus 146 ~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~la~-~~~~~g~~~~A~~~~~ 224 (470)
...+.+...|...+...|.....|...|..-.+.|..+.+.++|++++.--|-+.+.|..+-. +-...|+.+.-...|+
T Consensus 59 ~~~~~~r~~y~~fL~kyPl~~gyW~kfA~~E~klg~~~~s~~Vfergv~aip~SvdlW~~Y~~f~~n~~~d~~~lr~~fe 138 (577)
T KOG1258|consen 59 EDVDALREVYDIFLSKYPLCYGYWKKFADYEYKLGNAENSVKVFERGVQAIPLSVDLWLSYLAFLKNNNGDPETLRDLFE 138 (577)
T ss_pred hHHHHHHHHHHHHHhhCccHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHhhhhHHHHHHHHHHHHhccCCCHHHHHHHHH
Confidence 334555666666677777777777777777777777777777777777777766666654433 2334566666666777
Q ss_pred HHHhhCCCCh---HHHHHHHHHHHhhhcccccccccchhhhhHHHhcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHH
Q 012143 225 DLILKDQNHP---AALINYAALLLCKYGSVLAGAGANTGEGACLDQASAVNVAKECLLAALKADPKAAHIWANLANAYYL 301 (470)
Q Consensus 225 ~~l~~~p~~~---~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~la~~~~~ 301 (470)
++......+. ..|..+...- ...+++..-..+|++.++.--.....++..=.-+..
T Consensus 139 ~A~~~vG~dF~S~~lWdkyie~e---------------------n~qks~k~v~~iyeRileiP~~~~~~~f~~f~~~l~ 197 (577)
T KOG1258|consen 139 RAKSYVGLDFLSDPLWDKYIEFE---------------------NGQKSWKRVANIYERILEIPLHQLNRHFDRFKQLLN 197 (577)
T ss_pred HHHHhcccchhccHHHHHHHHHH---------------------hccccHHHHHHHHHHHHhhhhhHhHHHHHHHHHHHh
Confidence 7766544332 2232222222 246677777777777776433222222222211222
Q ss_pred c------CChhHHHHHHHHHHhc--CCCcccHH--HHHHHHH--------------HHHhhhccCchHHhhhhHHHHHHH
Q 012143 302 T------GDHRSSGKCLEKAAKL--EPNCMSTR--YAVAVSR--------------IKDAERSQEPTEQLSWAGNEMASI 357 (470)
Q Consensus 302 ~------g~~~~A~~~~~~a~~~--~p~~~~~~--~~l~~~~--------------~~~~~~~~~~~~~~~~~~~~~~~~ 357 (470)
. -..+++...-...... .+...... ...+... +.+........-+...........
T Consensus 198 ~~~~~~l~~~d~~~~l~~~~~~~~~~~~~~~~~e~~~~~v~~~~~~s~~l~~~~~~l~~~~~~~~~~~~~s~~~~~kr~~ 277 (577)
T KOG1258|consen 198 QNEEKILLSIDELIQLRSDVAERSKITHSQEPLEELEIGVKDSTDPSKSLTEEKTILKRIVSIHEKVYQKSEEEEEKRWG 277 (577)
T ss_pred cCChhhhcCHHHHHHHhhhHHhhhhcccccChhHHHHHHHhhccCccchhhHHHHHHHHHHHHHHHHHHhhHhHHHHHHh
Confidence 1 1222332222222211 00000000 0000000 000000000000000000000000
Q ss_pred hhc--------CCCCCCCcHHHHHHHHHHHhccccHHHHHHHHHHHhcch--hhhhHhhHHHHHHHhccHHHHHHHHHHH
Q 012143 358 LRE--------GDPVQIEPPIAWAGFAAVQKTHHEVAAAFETEENELSKM--EECAGAGESAFLDQASAVNVAKECLLAA 427 (470)
Q Consensus 358 ~~~--------~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~--~~~~~~~l~~~~~~~~~~~~A~~~~~~a 427 (470)
... ..+..+.....|..........|+++...-.+.+.+-+. ....|+..+......|+.+-|-..+..+
T Consensus 278 fE~~IkrpYfhvkpl~~aql~nw~~yLdf~i~~g~~~~~~~l~ercli~cA~Y~efWiky~~~m~~~~~~~~~~~~~~~~ 357 (577)
T KOG1258|consen 278 FEEGIKRPYFHVKPLDQAQLKNWRYYLDFEITLGDFSRVFILFERCLIPCALYDEFWIKYARWMESSGDVSLANNVLARA 357 (577)
T ss_pred hhhhccccccccCcccHHHHHHHHHHhhhhhhcccHHHHHHHHHHHHhHHhhhHHHHHHHHHHHHHcCchhHHHHHHHhh
Confidence 111 112222344567777777788899999999888877644 4477888888888888888888888888
Q ss_pred Hhc-CCCcHHHHHHHHHHHHHcCChHHHHHHHHHHHHhhc
Q 012143 428 LKA-DPKAAHIWANLANAYYLTGDHRSSGKCLEKVLMVYC 466 (470)
Q Consensus 428 l~~-~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~ 466 (470)
.+. .|..+.+...-+.+-...|++..|...+++..+-+|
T Consensus 358 ~~i~~k~~~~i~L~~a~f~e~~~n~~~A~~~lq~i~~e~p 397 (577)
T KOG1258|consen 358 CKIHVKKTPIIHLLEARFEESNGNFDDAKVILQRIESEYP 397 (577)
T ss_pred hhhcCCCCcHHHHHHHHHHHhhccHHHHHHHHHHHHhhCC
Confidence 775 466677888888888888999999999998887764
|
|
| >PF08424 NRDE-2: NRDE-2, necessary for RNA interference; InterPro: IPR013633 This is domain is found in eukaryotic proteins of unknown function | Back alignment and domain information |
|---|
Probab=97.44 E-value=0.052 Score=48.50 Aligned_cols=166 Identities=16% Similarity=0.002 Sum_probs=115.7
Q ss_pred HHHHHHHHhCCCChhHHHHHHHHHHHhCChhHHHHHHHHHHHHHhhhhcccchhhhHHHHHHhhhccccccccCCCcccc
Q 012143 62 TGLVHVARKMPKNAHAHFLLGLMYQRLGQPLKAVSSYEKAEEILLRCEADIARPELLSLVQIHHAQCLLPESSGDNSLDK 141 (470)
Q Consensus 62 ~~~~~~l~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 141 (470)
..|.+.++.+|.+..+|..+....-..-...... +.-
T Consensus 6 ~el~~~v~~~P~di~~Wl~li~~Qd~~~~~~~~~----~~~--------------------------------------- 42 (321)
T PF08424_consen 6 AELNRRVRENPHDIEAWLELIEFQDELFRLQSSS----KAE--------------------------------------- 42 (321)
T ss_pred HHHHHHHHhCcccHHHHHHHHHHHHHhccccccc----hhh---------------------------------------
Confidence 4567778889999999988877665433222211 000
Q ss_pred ccCcccHHHHHHHHHHhhhcCccchHHHHHHHHHHHHcCChHHHHHHHHHHhhcCCCChHHHHHHHHHHHH---cCCHHH
Q 012143 142 ELEPEELEEILSKLKESMQSDTRQAVVWNTLGLILLKSGRLQSSISVLSSLLAVDPNNCDCIGNLGIAYFQ---SGDMEQ 218 (470)
Q Consensus 142 ~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~la~~~~~---~g~~~~ 218 (470)
...-.+.-+.++++|++.+|++...+..+-.+.....+.++..+-+++++..+|+++..|...-..... .-.++.
T Consensus 43 --~~a~~E~klsilerAL~~np~~~~L~l~~l~~~~~~~~~~~l~~~we~~l~~~~~~~~LW~~yL~~~q~~~~~f~v~~ 120 (321)
T PF08424_consen 43 --RRALAERKLSILERALKHNPDSERLLLGYLEEGEKVWDSEKLAKKWEELLFKNPGSPELWREYLDFRQSNFASFTVSD 120 (321)
T ss_pred --HHHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHCCCChHHHHHHHHHHHHHhccCcHHH
Confidence 001126778899999999999999998888888888899999999999999999999888766554433 345778
Q ss_pred HHHHHHHHHhhCCC-----------ChHHHHHHHHHHHhhhcccccccccchhhhhHHHhcCCHHHHHHHHHHHHhcCC
Q 012143 219 SAKCFQDLILKDQN-----------HPAALINYAALLLCKYGSVLAGAGANTGEGACLDQASAVNVAKECLLAALKADP 286 (470)
Q Consensus 219 A~~~~~~~l~~~p~-----------~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~p 286 (470)
....|.+++..-.. .+..-..+..++. .......+.|..+.|+..++-.++.+=
T Consensus 121 ~~~~y~~~l~~L~~~~~~~~~~~~~~~~~e~~~l~v~~--------------r~~~fl~~aG~~E~Ava~~Qa~lE~n~ 185 (321)
T PF08424_consen 121 VRDVYEKCLRALSRRRSGRMTSHPDLPELEEFMLYVFL--------------RLCRFLRQAGYTERAVALWQALLEFNF 185 (321)
T ss_pred HHHHHHHHHHHHHHhhccccccccchhhHHHHHHHHHH--------------HHHHHHHHCCchHHHHHHHHHHHHHHc
Confidence 88888888754211 1112222222222 245566689999999999999998753
|
|
| >COG2909 MalT ATP-dependent transcriptional regulator [Transcription] | Back alignment and domain information |
|---|
Probab=97.44 E-value=0.14 Score=50.23 Aligned_cols=110 Identities=10% Similarity=-0.031 Sum_probs=80.3
Q ss_pred ChHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCC--ChHHHHHHHHHHHhhhcccccccccchhhhhHHHhcCCHHHHHH
Q 012143 199 NCDCIGNLGIAYFQSGDMEQSAKCFQDLILKDQN--HPAALINYAALLLCKYGSVLAGAGANTGEGACLDQASAVNVAKE 276 (470)
Q Consensus 199 ~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~--~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~ 276 (470)
+|......++......++.+|.....++...-|. ....-..++...- -.|.+....|++++|++
T Consensus 414 ~P~Lvll~aW~~~s~~r~~ea~~li~~l~~~l~~~~~~~~~~l~ae~~a--------------L~a~val~~~~~e~a~~ 479 (894)
T COG2909 414 TPRLVLLQAWLLASQHRLAEAETLIARLEHFLKAPMHSRQGDLLAEFQA--------------LRAQVALNRGDPEEAED 479 (894)
T ss_pred CchHHHHHHHHHHHccChHHHHHHHHHHHHHhCcCcccchhhHHHHHHH--------------HHHHHHHhcCCHHHHHH
Confidence 4667778888899999999999999888765433 2211111111110 12445557999999999
Q ss_pred HHHHHHhcCCC-----CHHHHHHHHHHHHHcCChhHHHHHHHHHHhcCCCc
Q 012143 277 CLLAALKADPK-----AAHIWANLANAYYLTGDHRSSGKCLEKAAKLEPNC 322 (470)
Q Consensus 277 ~~~~~~~~~p~-----~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~p~~ 322 (470)
..+.++..-|. ...+...+|.+..-.|++++|..+...+.+.....
T Consensus 480 lar~al~~L~~~~~~~r~~~~sv~~~a~~~~G~~~~Al~~~~~a~~~a~~~ 530 (894)
T COG2909 480 LARLALVQLPEAAYRSRIVALSVLGEAAHIRGELTQALALMQQAEQMARQH 530 (894)
T ss_pred HHHHHHHhcccccchhhhhhhhhhhHHHHHhchHHHHHHHHHHHHHHHHHc
Confidence 99999988776 35567888999999999999999999988875443
|
|
| >PF07079 DUF1347: Protein of unknown function (DUF1347); InterPro: IPR010764 This family consists of several hypothetical bacterial proteins of around 610 residues in length | Back alignment and domain information |
|---|
Probab=97.43 E-value=0.084 Score=47.54 Aligned_cols=108 Identities=9% Similarity=0.012 Sum_probs=77.1
Q ss_pred HHHHHHcCC-HHHHHHHHHHHHhhCCCChHHHHHHHHHHHhhhccccc---------------------------ccccc
Q 012143 207 GIAYFQSGD-MEQSAKCFQDLILKDQNHPAALINYAALLLCKYGSVLA---------------------------GAGAN 258 (470)
Q Consensus 207 a~~~~~~g~-~~~A~~~~~~~l~~~p~~~~~~~~l~~~~~~~~~~~~~---------------------------~~~~~ 258 (470)
|.-+.+.|. -++|+..++.+++..|.+.......-...-....++++ +....
T Consensus 386 Ak~lW~~g~~dekalnLLk~il~ft~yD~ec~n~v~~fvKq~Y~qaLs~~~~~rLlkLe~fi~e~gl~~i~i~e~eian~ 465 (549)
T PF07079_consen 386 AKHLWEIGQCDEKALNLLKLILQFTNYDIECENIVFLFVKQAYKQALSMHAIPRLLKLEDFITEVGLTPITISEEEIANF 465 (549)
T ss_pred HHHHHhcCCccHHHHHHHHHHHHhccccHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHhcCCCcccccHHHHHHH
Confidence 334445666 88899999999998888775433222211111111111 12233
Q ss_pred hhhhhHHHhcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCChhHHHHHHHHH
Q 012143 259 TGEGACLDQASAVNVAKECLLAALKADPKAAHIWANLANAYYLTGDHRSSGKCLEKA 315 (470)
Q Consensus 259 ~~~~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~a 315 (470)
+.-|..+...|+|.++.-+-.=..++.| ++.++..+|.+.....+|++|..++...
T Consensus 466 LaDAEyLysqgey~kc~~ys~WL~~iaP-S~~~~RLlGl~l~e~k~Y~eA~~~l~~L 521 (549)
T PF07079_consen 466 LADAEYLYSQGEYHKCYLYSSWLTKIAP-SPQAYRLLGLCLMENKRYQEAWEYLQKL 521 (549)
T ss_pred HHHHHHHHhcccHHHHHHHHHHHHHhCC-cHHHHHHHHHHHHHHhhHHHHHHHHHhC
Confidence 4457778899999999999988999999 7999999999999999999999998754
|
Members of this family are highly conserved and seem to be specific to Chlamydia species. The function of this family is unknown. |
| >PF13176 TPR_7: Tetratricopeptide repeat; PDB: 3SF4_C 3RO3_A 3RO2_A | Back alignment and domain information |
|---|
Probab=97.41 E-value=0.0004 Score=38.75 Aligned_cols=31 Identities=32% Similarity=0.374 Sum_probs=26.2
Q ss_pred HHHHHHHHHHHhCChhHHHHHHHHHHHHHhh
Q 012143 77 AHFLLGLMYQRLGQPLKAVSSYEKAEEILLR 107 (470)
Q Consensus 77 ~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~ 107 (470)
++..||.+|...|++++|+++|++++.+..+
T Consensus 1 al~~Lg~~~~~~g~~~~Ai~~y~~aL~l~~~ 31 (36)
T PF13176_consen 1 ALNNLGRIYRQQGDYEKAIEYYEQALALARD 31 (36)
T ss_dssp HHHHHHHHHHHCT-HHHHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHcCCHHHHHHHHHHHHHhccc
Confidence 4788999999999999999999998876543
|
|
| >KOG0890 consensus Protein kinase of the PI-3 kinase family involved in mitotic growth, DNA repair and meiotic recombination [Signal transduction mechanisms; Chromatin structure and dynamics; Replication, recombination and repair; Cell cycle control, cell division, chromosome partitioning] | Back alignment and domain information |
|---|
Probab=97.40 E-value=0.31 Score=53.25 Aligned_cols=104 Identities=12% Similarity=0.033 Sum_probs=81.6
Q ss_pred CCCCcHHHHHHHHHHHhccccHHHHHHHHHHHhcchhhhhHhhHHHHHHHhccHHHHHHHHHHHHhcC-CC---------
Q 012143 364 VQIEPPIAWAGFAAVQKTHHEVAAAFETEENELSKMEECAGAGESAFLDQASAVNVAKECLLAALKAD-PK--------- 433 (470)
Q Consensus 364 ~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~-p~--------- 433 (470)
........|...+.+.+..|.++.|....-.+.....+.+....|..+...|+-..|+..+++.++.+ |+
T Consensus 1665 ~~~~~ge~wLqsAriaR~aG~~q~A~nall~A~e~r~~~i~~E~AK~lW~~gd~~~Al~~Lq~~l~~~~~~~~~~~~~~p 1744 (2382)
T KOG0890|consen 1665 LKSRLGECWLQSARIARLAGHLQRAQNALLNAKESRLPEIVLERAKLLWQTGDELNALSVLQEILSKNFPDLHTPYTDTP 1744 (2382)
T ss_pred ccchhHHHHHHHHHHHHhcccHHHHHHHHHhhhhcccchHHHHHHHHHHhhccHHHHHHHHHHHHHhhcccccCCccccc
Confidence 34456789999999999999999999999998888888999999999999999999999999999653 22
Q ss_pred -c------HHHHHHHHHHHHHcCCh--HHHHHHHHHHHHhhcc
Q 012143 434 -A------AHIWANLANAYYLTGDH--RSSGKCLEKVLMVYCS 467 (470)
Q Consensus 434 -~------~~~~~~la~~~~~~g~~--~~A~~~~~~al~~~~~ 467 (470)
. ..+...++......|+. ..-+++|..+.++++.
T Consensus 1745 ~~~n~~i~~~~~L~~~~~~~es~n~~s~~ilk~Y~~~~ail~e 1787 (2382)
T KOG0890|consen 1745 QSVNLLIFKKAKLKITKYLEESGNFESKDILKYYHDAKAILPE 1787 (2382)
T ss_pred hhhhhhhhhhHHHHHHHHHHHhcchhHHHHHHHHHHHHHHccc
Confidence 1 12344455555556653 3456788888888873
|
|
| >PF07079 DUF1347: Protein of unknown function (DUF1347); InterPro: IPR010764 This family consists of several hypothetical bacterial proteins of around 610 residues in length | Back alignment and domain information |
|---|
Probab=97.37 E-value=0.1 Score=47.02 Aligned_cols=140 Identities=11% Similarity=0.045 Sum_probs=84.4
Q ss_pred hhhhhhhhhhhHHHHHHHHHHHHhcCCCCcchhh---hcccch-hhhhcChhhHHHHHHHHHHhCCCChhHHHHHHHHHH
Q 012143 11 EGKKINKLGKCRSRISSKMDSALEFGVDADGDQS---GLGTSS-SSREEKVSSLKTGLVHVARKMPKNAHAHFLLGLMYQ 86 (470)
Q Consensus 11 ~~~~~~~~g~~~~a~~~~~~~~l~~~p~~~~~~~---~~~~~~-~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~l~~~~~ 86 (470)
.|-.+.+.++..++- ..|.+......+++...- ..|.+. ....++++.....+...-+..|+.+......|...+
T Consensus 12 Qgf~Lqkq~~~~esE-kifskI~~e~~~~~f~lkeEvl~grilnAffl~nld~Me~~l~~l~~~~~~s~~l~LF~~L~~Y 90 (549)
T PF07079_consen 12 QGFILQKQKKFQESE-KIFSKIYDEKESSPFLLKEEVLGGRILNAFFLNNLDLMEKQLMELRQQFGKSAYLPLFKALVAY 90 (549)
T ss_pred hhHHHHHHhhhhHHH-HHHHHHHHHhhcchHHHHHHHHhhHHHHHHHHhhHHHHHHHHHHHHHhcCCchHHHHHHHHHHH
Confidence 456677888888876 666666554333322111 223331 456777888888887777788999999999999999
Q ss_pred HhCChhHHHHHHHHHHHHHhhhhcccchhhhHHHHH-HhhhccccccccCCCccccccCcccHHHHHHHHHHhhh
Q 012143 87 RLGQPLKAVSSYEKAEEILLRCEADIARPELLSLVQ-IHHAQCLLPESSGDNSLDKELEPEELEEILSKLKESMQ 160 (470)
Q Consensus 87 ~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~ 160 (470)
+.+++.+|++.+..--+.-..........++..... .++ +......++..|++.++..++++.+.
T Consensus 91 ~~k~~~kal~~ls~w~~~~~~~~~~~Ld~ni~~l~~df~l---------~~i~a~sLIe~g~f~EgR~iLn~i~~ 156 (549)
T PF07079_consen 91 KQKEYRKALQALSVWKEQIKGTESPWLDTNIQQLFSDFFL---------DEIEAHSLIETGRFSEGRAILNRIIE 156 (549)
T ss_pred HhhhHHHHHHHHHHHHhhhcccccchhhhhHHHHhhHHHH---------HHHHHHHHHhcCCcchHHHHHHHHHH
Confidence 999999999988776554211111111111110000 000 00011124577888899888888765
|
Members of this family are highly conserved and seem to be specific to Chlamydia species. The function of this family is unknown. |
| >PF08631 SPO22: Meiosis protein SPO22/ZIP4 like; InterPro: IPR013940 SPO22 is a meiosis-specific protein with similarity to phospholipase A2, involved in completion of nuclear divisions during meiosis; induced early in meiosis [] | Back alignment and domain information |
|---|
Probab=97.36 E-value=0.086 Score=46.10 Aligned_cols=155 Identities=14% Similarity=0.130 Sum_probs=102.6
Q ss_pred cCcccHHHHHHHHHHhhhcC----ccc----hHHHHHHHHHHHHcC-ChHHHHHHHHHHhhc----CC---CC-------
Q 012143 143 LEPEELEEILSKLKESMQSD----TRQ----AVVWNTLGLILLKSG-RLQSSISVLSSLLAV----DP---NN------- 199 (470)
Q Consensus 143 ~~~~~~~~A~~~~~~~~~~~----p~~----~~~~~~l~~~~~~~~-~~~~A~~~~~~a~~~----~~---~~------- 199 (470)
.+.|+++.|..++.++-... |+. ...+++.|......+ +++.|..+++++.++ .+ ..
T Consensus 4 ~~~~~~~~A~~~~~K~~~~~~~~~~~~~~~La~~~yn~G~~l~~~~~~~~~a~~wL~~a~~~l~~~~~~~~~~~~~~elr 83 (278)
T PF08631_consen 4 WKQGDLDLAEHMYSKAKDLLNSLDPDMAEELARVCYNIGKSLLSKKDKYEEAVKWLQRAYDILEKPGKMDKLSPDGSELR 83 (278)
T ss_pred hhhCCHHHHHHHHHHhhhHHhcCCcHHHHHHHHHHHHHHHHHHHcCCChHHHHHHHHHHHHHHHhhhhccccCCcHHHHH
Confidence 46789999999999986543 433 346788899999999 999999999999887 22 11
Q ss_pred hHHHHHHHHHHHHcCCHH---HHHHHHHHHHhhCCCChHHHHHHHHHHHhhhcccccccccchhhhhHHHhcCCHHHHHH
Q 012143 200 CDCIGNLGIAYFQSGDME---QSAKCFQDLILKDQNHPAALINYAALLLCKYGSVLAGAGANTGEGACLDQASAVNVAKE 276 (470)
Q Consensus 200 ~~~~~~la~~~~~~g~~~---~A~~~~~~~l~~~p~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~ 276 (470)
..++..++.+|...+.++ +|....+.+-...|+.+..+...-.++. +.++.+.+.+
T Consensus 84 ~~iL~~La~~~l~~~~~~~~~ka~~~l~~l~~e~~~~~~~~~L~l~il~---------------------~~~~~~~~~~ 142 (278)
T PF08631_consen 84 LSILRLLANAYLEWDTYESVEKALNALRLLESEYGNKPEVFLLKLEILL---------------------KSFDEEEYEE 142 (278)
T ss_pred HHHHHHHHHHHHcCCChHHHHHHHHHHHHHHHhCCCCcHHHHHHHHHHh---------------------ccCChhHHHH
Confidence 236788899998888765 4455555555566777766544444443 4788899999
Q ss_pred HHHHHHhcCCC-CHHHHHHHHHH-HHHcCChhHHHHHHHHHHhc
Q 012143 277 CLLAALKADPK-AAHIWANLANA-YYLTGDHRSSGKCLEKAAKL 318 (470)
Q Consensus 277 ~~~~~~~~~p~-~~~~~~~la~~-~~~~g~~~~A~~~~~~a~~~ 318 (470)
.+.+++..-+- ....-..+..+ .........|...+...+..
T Consensus 143 ~L~~mi~~~~~~e~~~~~~l~~i~~l~~~~~~~a~~~ld~~l~~ 186 (278)
T PF08631_consen 143 ILMRMIRSVDHSESNFDSILHHIKQLAEKSPELAAFCLDYLLLN 186 (278)
T ss_pred HHHHHHHhcccccchHHHHHHHHHHHHhhCcHHHHHHHHHHHHH
Confidence 99999886542 12222222222 11223445677777766643
|
It is also involved in sporulation []. |
| >PF04910 Tcf25: Transcriptional repressor TCF25; InterPro: IPR006994 This entry appears to represent a novel family of basic helix-loop-helix (bHLH) proteins that control differentiation and development of a variety of organs [, ] | Back alignment and domain information |
|---|
Probab=97.36 E-value=0.043 Score=49.58 Aligned_cols=169 Identities=16% Similarity=0.097 Sum_probs=107.2
Q ss_pred HHHhCCCChhHHHHHHHHHHHhCChhHHHHHHHHHHHHHhhhhcccchhhhHHHHHHhhhccccccccCCCccccccCcc
Q 012143 67 VARKMPKNAHAHFLLGLMYQRLGQPLKAVSSYEKAEEILLRCEADIARPELLSLVQIHHAQCLLPESSGDNSLDKELEPE 146 (470)
Q Consensus 67 ~l~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 146 (470)
.+..+|-+.+++..++.++..+|+...|.++.++|+-..... ..+.+.. ...-...|..
T Consensus 32 ll~~~PyHidtLlqls~v~~~~gd~~~A~~lleRALf~~e~~----~~~~F~~--------~~~~~~~g~~--------- 90 (360)
T PF04910_consen 32 LLQKNPYHIDTLLQLSEVYRQQGDHAQANDLLERALFAFERA----FHPSFSP--------FRSNLTSGNC--------- 90 (360)
T ss_pred HHHHCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHH----HHHHhhh--------hhcccccCcc---------
Confidence 345699999999999999999999999999999998653110 0011100 0000000110
Q ss_pred cHHHHHHHHHHhhhcCccc---hHHHHHHHHHHHHcCChHHHHHHHHHHhhcCCC-ChHHHHHHH-HHHHHcCCHHHHHH
Q 012143 147 ELEEILSKLKESMQSDTRQ---AVVWNTLGLILLKSGRLQSSISVLSSLLAVDPN-NCDCIGNLG-IAYFQSGDMEQSAK 221 (470)
Q Consensus 147 ~~~~A~~~~~~~~~~~p~~---~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~-~~~~~~~la-~~~~~~g~~~~A~~ 221 (470)
+.--..+.| -.+++.....+.+.|-+..|.++.+-.+.++|. ++-...... ....+.++++--+.
T Consensus 91 ----------rL~~~~~eNR~fflal~r~i~~L~~RG~~rTAlE~~KlLlsLdp~~DP~g~ll~ID~~ALrs~~y~~Li~ 160 (360)
T PF04910_consen 91 ----------RLDYRRPENRQFFLALFRYIQSLGRRGCWRTALEWCKLLLSLDPDEDPLGVLLFIDYYALRSRQYQWLID 160 (360)
T ss_pred ----------ccCCccccchHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHhcCCCCCcchhHHHHHHHHHhcCCHHHHHH
Confidence 000011222 346667788889999999999999999999998 765444444 44467788877777
Q ss_pred HHHHHHhhCCC-----ChHHHHHHHHHHHhhhcccccccccchhhhhHHHhcCCH---------------HHHHHHHHHH
Q 012143 222 CFQDLILKDQN-----HPAALINYAALLLCKYGSVLAGAGANTGEGACLDQASAV---------------NVAKECLLAA 281 (470)
Q Consensus 222 ~~~~~l~~~p~-----~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---------------~~A~~~~~~~ 281 (470)
.++........ -|...+..+.++. ..++. +.|...+.+|
T Consensus 161 ~~~~~~~~~~~~~~~~lPn~a~S~aLA~~---------------------~l~~~~~~~~~~~~~~~~~~~~A~~~L~~A 219 (360)
T PF04910_consen 161 FSESPLAKCYRNWLSLLPNFAFSIALAYF---------------------RLEKEESSQSSAQSGRSENSESADEALQKA 219 (360)
T ss_pred HHHhHhhhhhhhhhhhCccHHHHHHHHHH---------------------HhcCccccccccccccccchhHHHHHHHHH
Confidence 77765542111 1222333333333 34444 8999999999
Q ss_pred HhcCCC
Q 012143 282 LKADPK 287 (470)
Q Consensus 282 ~~~~p~ 287 (470)
+...|.
T Consensus 220 i~~fP~ 225 (360)
T PF04910_consen 220 ILRFPW 225 (360)
T ss_pred HHHhHH
Confidence 998775
|
Human Nulp1 (Q2MK75 from SWISSPROT) is a basic helix-loop-helix protein expressed broadly during early embryonic organogenesis. Over expression of human Nulp1 in COS-7 cells inhibits the transcriptional activity of serum response factor (SRF), suggesting that Nulp1 may act as a novel bHLH transcriptional repressor in the SRF signalling pathway to mediate cellular functions []. |
| >KOG0530 consensus Protein farnesyltransferase, alpha subunit/protein geranylgeranyltransferase type I, alpha subunit [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=97.35 E-value=0.066 Score=44.49 Aligned_cols=141 Identities=16% Similarity=0.180 Sum_probs=112.6
Q ss_pred HHHHHHHHHHhhhcCccchHHHHHHHHHHHHcCChH-HHHHHHHHHhhcCCCChHHHHHHHHHHHHcCCHHHHHHHHHHH
Q 012143 148 LEEILSKLKESMQSDTRQAVVWNTLGLILLKSGRLQ-SSISVLSSLLAVDPNNCDCIGNLGIAYFQSGDMEQSAKCFQDL 226 (470)
Q Consensus 148 ~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~~~~~-~A~~~~~~a~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~ 226 (470)
+.+-+.++..++..+|.+..+|...-.+....|++. .-++..+.++..+.++..+|...-.+...-+.++.-+.+..+.
T Consensus 94 L~~El~~l~eI~e~npKNYQvWHHRr~ive~l~d~s~rELef~~~~l~~DaKNYHaWshRqW~~r~F~~~~~EL~y~~~L 173 (318)
T KOG0530|consen 94 LNKELEYLDEIIEDNPKNYQVWHHRRVIVELLGDPSFRELEFTKLMLDDDAKNYHAWSHRQWVLRFFKDYEDELAYADEL 173 (318)
T ss_pred HHHHHHHHHHHHHhCccchhHHHHHHHHHHHhcCcccchHHHHHHHHhccccchhhhHHHHHHHHHHhhHHHHHHHHHHH
Confidence 467788889999999999999999999999999888 8889999999999999999999999999999999999999999
Q ss_pred HhhCCCChHHHHHHHHHHHhhhcccccccccchhhhhHHHhcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHH-cC
Q 012143 227 ILKDQNHPAALINYAALLLCKYGSVLAGAGANTGEGACLDQASAVNVAKECLLAALKADPKAAHIWANLANAYYL-TG 303 (470)
Q Consensus 227 l~~~p~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~la~~~~~-~g 303 (470)
++.+-.+..+|...-.+..... |. ...-..+.-+.+..+.|...|++..+|..|.-++.. .|
T Consensus 174 le~Di~NNSAWN~Ryfvi~~~~-------------~~--~~~~~le~El~yt~~~I~~vP~NeSaWnYL~G~l~~d~g 236 (318)
T KOG0530|consen 174 LEEDIRNNSAWNQRYFVITNTK-------------GV--ISKAELERELNYTKDKILLVPNNESAWNYLKGLLELDSG 236 (318)
T ss_pred HHHhhhccchhheeeEEEEecc-------------CC--ccHHHHHHHHHHHHHHHHhCCCCccHHHHHHHHHHhccC
Confidence 9988877777764322221100 00 001224556778888999999999999999888876 44
|
|
| >KOG1308 consensus Hsp70-interacting protein Hip/Transient component of progesterone receptor complexes and an Hsp70-binding protein [Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=97.35 E-value=0.00027 Score=60.35 Aligned_cols=94 Identities=12% Similarity=0.046 Sum_probs=76.2
Q ss_pred HHHHHHcCChHHHHHHHHHHhhcCCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCChHHHHHHHHHHHhhhcccc
Q 012143 173 GLILLKSGRLQSSISVLSSLLAVDPNNCDCIGNLGIAYFQSGDMEQSAKCFQDLILKDQNHPAALINYAALLLCKYGSVL 252 (470)
Q Consensus 173 ~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~l~~~~~~~~~~~~ 252 (470)
+.-.+..|.++.|++.|..++.++|.....+...+.++..++++..|+..+..++.++|+....+-..+....
T Consensus 121 A~eAln~G~~~~ai~~~t~ai~lnp~~a~l~~kr~sv~lkl~kp~~airD~d~A~ein~Dsa~~ykfrg~A~r------- 193 (377)
T KOG1308|consen 121 ASEALNDGEFDTAIELFTSAIELNPPLAILYAKRASVFLKLKKPNAAIRDCDFAIEINPDSAKGYKFRGYAER------- 193 (377)
T ss_pred HHHHhcCcchhhhhcccccccccCCchhhhcccccceeeeccCCchhhhhhhhhhccCcccccccchhhHHHH-------
Confidence 3445567888999999999999999888888889999999999999999999999888888776666665555
Q ss_pred cccccchhhhhHHHhcCCHHHHHHHHHHHHhcCCC
Q 012143 253 AGAGANTGEGACLDQASAVNVAKECLLAALKADPK 287 (470)
Q Consensus 253 ~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~p~ 287 (470)
.+|++++|...+..+.+++-+
T Consensus 194 --------------llg~~e~aa~dl~~a~kld~d 214 (377)
T KOG1308|consen 194 --------------LLGNWEEAAHDLALACKLDYD 214 (377)
T ss_pred --------------HhhchHHHHHHHHHHHhcccc
Confidence 588888888888888877544
|
|
| >COG0790 FOG: TPR repeat, SEL1 subfamily [General function prediction only] | Back alignment and domain information |
|---|
Probab=97.30 E-value=0.044 Score=48.49 Aligned_cols=153 Identities=16% Similarity=0.161 Sum_probs=114.8
Q ss_pred cccHHHHHHHHHHhhhcCccchHHHHHHHHHHHH----cCChHHHHHHHHHHhhcCCCC-hHHHHHHHHHHHHcC-----
Q 012143 145 PEELEEILSKLKESMQSDTRQAVVWNTLGLILLK----SGRLQSSISVLSSLLAVDPNN-CDCIGNLGIAYFQSG----- 214 (470)
Q Consensus 145 ~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~----~~~~~~A~~~~~~a~~~~~~~-~~~~~~la~~~~~~g----- 214 (470)
..+..+|...|+.+. ...++.+.+.+|.+|.. ..++.+|..+|+++.+..-.. ..+...+|..|..-.
T Consensus 90 ~~~~~~A~~~~~~~a--~~g~~~a~~~lg~~~~~G~gv~~d~~~A~~~~~~Aa~~g~~~a~~~~~~l~~~~~~g~~~~~~ 167 (292)
T COG0790 90 SRDKTKAADWYRCAA--ADGLAEALFNLGLMYANGRGVPLDLVKALKYYEKAAKLGNVEAALAMYRLGLAYLSGLQALAV 167 (292)
T ss_pred cccHHHHHHHHHHHh--hcccHHHHHhHHHHHhcCCCcccCHHHHHHHHHHHHHcCChhHHHHHHHHHHHHHcChhhhcc
Confidence 456789999999554 45667889999999987 459999999999998875433 344888888887642
Q ss_pred --CHHHHHHHHHHHHhhCCCChHHHHHHHHHHHhhhcccccccccchhhhhHHHhcCCHHHHHHHHHHHHhcCCCCHHHH
Q 012143 215 --DMEQSAKCFQDLILKDQNHPAALINYAALLLCKYGSVLAGAGANTGEGACLDQASAVNVAKECLLAALKADPKAAHIW 292 (470)
Q Consensus 215 --~~~~A~~~~~~~l~~~p~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~ 292 (470)
+...|...|.++-... ++.+...+|.+|..- ..-..++.+|..+|.++-+... ....
T Consensus 168 ~~~~~~A~~~~~~aa~~~--~~~a~~~lg~~y~~G-----------------~Gv~~d~~~A~~wy~~Aa~~g~--~~a~ 226 (292)
T COG0790 168 AYDDKKALYLYRKAAELG--NPDAQLLLGRMYEKG-----------------LGVPRDLKKAFRWYKKAAEQGD--GAAC 226 (292)
T ss_pred cHHHHhHHHHHHHHHHhc--CHHHHHHHHHHHHcC-----------------CCCCcCHHHHHHHHHHHHHCCC--HHHH
Confidence 2337888888887765 777888888777631 1135689999999999998877 8888
Q ss_pred HHHHHHHHHcC---------------ChhHHHHHHHHHHhcCCC
Q 012143 293 ANLANAYYLTG---------------DHRSSGKCLEKAAKLEPN 321 (470)
Q Consensus 293 ~~la~~~~~~g---------------~~~~A~~~~~~a~~~~p~ 321 (470)
+.++ ++...| +...|...+..+....+.
T Consensus 227 ~~~~-~~~~~g~g~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~ 269 (292)
T COG0790 227 YNLG-LMYLNGEGVKKAAFLTAAKEEDKKQALEWLQKACELGFD 269 (292)
T ss_pred HHHH-HHHhcCCCchhhhhcccccCCCHHHHHHHHHHHHHcCCh
Confidence 8888 777666 566666666666655544
|
|
| >KOG0890 consensus Protein kinase of the PI-3 kinase family involved in mitotic growth, DNA repair and meiotic recombination [Signal transduction mechanisms; Chromatin structure and dynamics; Replication, recombination and repair; Cell cycle control, cell division, chromosome partitioning] | Back alignment and domain information |
|---|
Probab=97.30 E-value=0.26 Score=53.82 Aligned_cols=264 Identities=11% Similarity=0.066 Sum_probs=154.3
Q ss_pred HHHHHHHHHcCChHHHHHHHHHHhhcCCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCChHHHHHHHHHHHhhhc
Q 012143 170 NTLGLILLKSGRLQSSISVLSSLLAVDPNNCDCIGNLGIAYFQSGDMEQSAKCFQDLILKDQNHPAALINYAALLLCKYG 249 (470)
Q Consensus 170 ~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~l~~~~~~~~~ 249 (470)
...-..+...|++..|..+|++++..+|+....+...-......|.++..+...+-.....++...-++.++.-..
T Consensus 1453 ~~qil~~e~~g~~~da~~Cye~~~q~~p~~~~~~~g~l~sml~~~~l~t~i~~~dg~~~~~se~~~~~~s~~~eaa---- 1528 (2382)
T KOG0890|consen 1453 YQQILEHEASGNWADAAACYERLIQKDPDKEKHHSGVLKSMLAIQHLSTEILHLDGLIINRSEEVDELNSLGVEAA---- 1528 (2382)
T ss_pred HHHHHHHHhhccHHHHHHHHHHhhcCCCccccchhhHHHhhhcccchhHHHhhhcchhhccCHHHHHHHHHHHHHH----
Confidence 3445566778999999999999999999988777777777788888998888887777666666666666654332
Q ss_pred ccccccccchhhhhHHHhcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCChhHHHH--HHHHHH--hcCCCcccH
Q 012143 250 SVLAGAGANTGEGACLDQASAVNVAKECLLAALKADPKAAHIWANLANAYYLTGDHRSSGK--CLEKAA--KLEPNCMST 325 (470)
Q Consensus 250 ~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~la~~~~~~g~~~~A~~--~~~~a~--~~~p~~~~~ 325 (470)
.+.++++.-..+.. ..+-++..+.. +|.+.....+-+.-.. ..+.+. .+.|-....
T Consensus 1529 ----------------W~l~qwD~~e~~l~---~~n~e~w~~~~-~g~~ll~~~~kD~~~~~~~i~~~r~~~i~~lsa~s 1588 (2382)
T KOG0890|consen 1529 ----------------WRLSQWDLLESYLS---DRNIEYWSVES-IGKLLLRNKKKDEIATLDLIENSRELVIENLSACS 1588 (2382)
T ss_pred ----------------hhhcchhhhhhhhh---cccccchhHHH-HHHHHHhhcccchhhHHHHHHHHHHHhhhhHHHhh
Confidence 25666766655544 11222222221 5666655544332111 111111 111110000
Q ss_pred ---HHHHHHHHHHHhhhccCchHHhhhhHHHHHHHhhcCCCC--CCCcHHHHHHHHHHHhccccHHHHHHHHHHHh----
Q 012143 326 ---RYAVAVSRIKDAERSQEPTEQLSWAGNEMASILREGDPV--QIEPPIAWAGFAAVQKTHHEVAAAFETEENEL---- 396 (470)
Q Consensus 326 ---~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~---- 396 (470)
.+..+...+- ..... .........+...... ...+..-|.+....-....+..+-+-.+++.+
T Consensus 1589 ~~~Sy~~~Y~~~~-------kLH~l-~el~~~~~~l~~~s~~~~s~~~sd~W~~Rl~~tq~s~~~~epILa~RRs~l~~~ 1660 (2382)
T KOG0890|consen 1589 IEGSYVRSYEILM-------KLHLL-LELENSIEELKKVSYDEDSANNSDNWKNRLERTQPSFRIKEPILAFRRSMLDLR 1660 (2382)
T ss_pred ccchHHHHHHHHH-------HHHHH-HHHHHHHHHhhccCccccccccchhHHHHHHHhchhHHHHhHHHHHHHHHHHHh
Confidence 0000000000 00000 0001111111111111 11222445555444444444555555555422
Q ss_pred -----cchhhhhHhhHHHHHHHhccHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHcCChHHHHHHHHHHHHhhcc
Q 012143 397 -----SKMEECAGAGESAFLDQASAVNVAKECLLAALKADPKAAHIWANLANAYYLTGDHRSSGKCLEKVLMVYCS 467 (470)
Q Consensus 397 -----~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~ 467 (470)
+..-.+.|...|.+-...|+++.|..+.-+|.+.. -+.+....|..+...|+...|+..+++.+++.-.
T Consensus 1661 ~~~~~~~~~ge~wLqsAriaR~aG~~q~A~nall~A~e~r--~~~i~~E~AK~lW~~gd~~~Al~~Lq~~l~~~~~ 1734 (2382)
T KOG0890|consen 1661 MRSNLKSRLGECWLQSARIARLAGHLQRAQNALLNAKESR--LPEIVLERAKLLWQTGDELNALSVLQEILSKNFP 1734 (2382)
T ss_pred ccccccchhHHHHHHHHHHHHhcccHHHHHHHHHhhhhcc--cchHHHHHHHHHHhhccHHHHHHHHHHHHHhhcc
Confidence 23344779999999999999999999999998876 5788999999999999999999999999987644
|
|
| >KOG0985 consensus Vesicle coat protein clathrin, heavy chain [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=97.29 E-value=0.054 Score=53.68 Aligned_cols=225 Identities=12% Similarity=0.014 Sum_probs=142.8
Q ss_pred CCcchhhhcccchhhhhcChhhHHHHHHHHHHhCCCChhHHHHHHHHHHHhCChhHHHHHHHHHHHHHhhhhcccchhhh
Q 012143 38 DADGDQSGLGTSSSSREEKVSSLKTGLVHVARKMPKNAHAHFLLGLMYQRLGQPLKAVSSYEKAEEILLRCEADIARPEL 117 (470)
Q Consensus 38 ~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~ 117 (470)
+.+..|..+|.. ....|...+|++.|-+ .++|..+.....+..+.|.|++-+.++.-+.+....+. .
T Consensus 1102 n~p~vWsqlakA-QL~~~~v~dAieSyik-----adDps~y~eVi~~a~~~~~~edLv~yL~MaRkk~~E~~-------i 1168 (1666)
T KOG0985|consen 1102 NEPAVWSQLAKA-QLQGGLVKDAIESYIK-----ADDPSNYLEVIDVASRTGKYEDLVKYLLMARKKVREPY-------I 1168 (1666)
T ss_pred CChHHHHHHHHH-HHhcCchHHHHHHHHh-----cCCcHHHHHHHHHHHhcCcHHHHHHHHHHHHHhhcCcc-------c
Confidence 455667777777 7777777777777754 35666677777777777777777777766665432211 0
Q ss_pred HHHHHHhhhccccccccCCCccccccCcccHHHHHHHHHHhhhcCccchHHHHHHHHHHHHcCChHHHHHHHHHHhhcCC
Q 012143 118 LSLVQIHHAQCLLPESSGDNSLDKELEPEELEEILSKLKESMQSDTRQAVVWNTLGLILLKSGRLQSSISVLSSLLAVDP 197 (470)
Q Consensus 118 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~ 197 (470)
- ..+..+| .+.++..+-... + ..|+.+. .-..|.-++..|.|+.|.-+|..
T Consensus 1169 d------~eLi~Ay-----------Akt~rl~elE~f----i-~gpN~A~-i~~vGdrcf~~~~y~aAkl~y~~------ 1219 (1666)
T KOG0985|consen 1169 D------SELIFAY-----------AKTNRLTELEEF----I-AGPNVAN-IQQVGDRCFEEKMYEAAKLLYSN------ 1219 (1666)
T ss_pred h------HHHHHHH-----------HHhchHHHHHHH----h-cCCCchh-HHHHhHHHhhhhhhHHHHHHHHH------
Confidence 0 0011111 112222222221 1 2444443 34678888888888888877754
Q ss_pred CChHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCChHHHHHHHHHHHhhhccccc---------ccccchhhhhHHHhc
Q 012143 198 NNCDCIGNLGIAYFQSGDMEQSAKCFQDLILKDQNHPAALINYAALLLCKYGSVLA---------GAGANTGEGACLDQA 268 (470)
Q Consensus 198 ~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~l~~~~~~~~~~~~~---------~~~~~~~~~~~~~~~ 268 (470)
..-|..++..+..+|+|+.|...-+++ ++...|...+..........++ .++..-.+-..|...
T Consensus 1220 --vSN~a~La~TLV~LgeyQ~AVD~aRKA-----ns~ktWK~VcfaCvd~~EFrlAQiCGL~iivhadeLeeli~~Yq~r 1292 (1666)
T KOG0985|consen 1220 --VSNFAKLASTLVYLGEYQGAVDAARKA-----NSTKTWKEVCFACVDKEEFRLAQICGLNIIVHADELEELIEYYQDR 1292 (1666)
T ss_pred --hhhHHHHHHHHHHHHHHHHHHHHhhhc-----cchhHHHHHHHHHhchhhhhHHHhcCceEEEehHhHHHHHHHHHhc
Confidence 456788999999999999999888876 3455666666555543222222 234444566788899
Q ss_pred CCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCChhHHHHHH
Q 012143 269 SAVNVAKECLLAALKADPKAAHIWANLANAYYLTGDHRSSGKCL 312 (470)
Q Consensus 269 ~~~~~A~~~~~~~~~~~p~~~~~~~~la~~~~~~g~~~~A~~~~ 312 (470)
|-+++-+..++.++.+..-+...+..||.+|.+- ++++-.+++
T Consensus 1293 GyFeElIsl~Ea~LGLERAHMgmfTELaiLYsky-kp~km~EHl 1335 (1666)
T KOG0985|consen 1293 GYFEELISLLEAGLGLERAHMGMFTELAILYSKY-KPEKMMEHL 1335 (1666)
T ss_pred CcHHHHHHHHHhhhchhHHHHHHHHHHHHHHHhc-CHHHHHHHH
Confidence 9999999999999988877777888888777653 333333333
|
|
| >COG2976 Uncharacterized protein conserved in bacteria [Function unknown] | Back alignment and domain information |
|---|
Probab=97.27 E-value=0.035 Score=43.97 Aligned_cols=120 Identities=15% Similarity=0.123 Sum_probs=82.8
Q ss_pred HHHHHHHHHhhcCCCCh---HHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCChHHHHHHHHHHHhhhcccccccccchh
Q 012143 184 SSISVLSSLLAVDPNNC---DCIGNLGIAYFQSGDMEQSAKCFQDLILKDQNHPAALINYAALLLCKYGSVLAGAGANTG 260 (470)
Q Consensus 184 ~A~~~~~~a~~~~~~~~---~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~l~~~~~~~~~~~~~~~~~~~~ 260 (470)
+.....++....+|.+. -+-..++..+...|++++|+..++.++... .+.. +..++...
T Consensus 70 ~~~~~~ekf~~~n~~t~Ya~laaL~lAk~~ve~~~~d~A~aqL~~~l~~t-~De~-lk~l~~lR---------------- 131 (207)
T COG2976 70 KSIAAAEKFVQANGKTIYAVLAALELAKAEVEANNLDKAEAQLKQALAQT-KDEN-LKALAALR---------------- 131 (207)
T ss_pred hhHHHHHHHHhhccccHHHHHHHHHHHHHHHhhccHHHHHHHHHHHHccc-hhHH-HHHHHHHH----------------
Confidence 44444555555555443 245677888999999999999999998643 2221 22222221
Q ss_pred hhhHHHhcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCChhHHHHHHHHHHhcCCCc
Q 012143 261 EGACLDQASAVNVAKECLLAALKADPKAAHIWANLANAYYLTGDHRSSGKCLEKAAKLEPNC 322 (470)
Q Consensus 261 ~~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~p~~ 322 (470)
++.+..+.|.+++|+..+....... -.+..-...|.++...|+-++|+..|++++...++.
T Consensus 132 LArvq~q~~k~D~AL~~L~t~~~~~-w~~~~~elrGDill~kg~k~~Ar~ay~kAl~~~~s~ 192 (207)
T COG2976 132 LARVQLQQKKADAALKTLDTIKEES-WAAIVAELRGDILLAKGDKQEARAAYEKALESDASP 192 (207)
T ss_pred HHHHHHHhhhHHHHHHHHhcccccc-HHHHHHHHhhhHHHHcCchHHHHHHHHHHHHccCCh
Confidence 3455568999999999887654311 124446678999999999999999999999987553
|
|
| >KOG1914 consensus mRNA cleavage and polyadenylation factor I complex, subunit RNA14 [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=97.20 E-value=0.18 Score=46.54 Aligned_cols=407 Identities=14% Similarity=0.095 Sum_probs=232.3
Q ss_pred hhHHHHHHHHHHHHhcCCCCcchhhhcccchhhhhcChhhHHHHHHHHHHhCCCChhHHH-HHHHHHHHhCChhHHHHHH
Q 012143 20 KCRSRISSKMDSALEFGVDADGDQSGLGTSSSSREEKVSSLKTGLVHVARKMPKNAHAHF-LLGLMYQRLGQPLKAVSSY 98 (470)
Q Consensus 20 ~~~~a~~~~~~~~l~~~p~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~-~l~~~~~~~g~~~~A~~~~ 98 (470)
.+++.- ..+++.+...|.++..|...... .+...+|+..+++|.+++...=+ .+.|. .+-.+....|+...+....
T Consensus 34 ~~~~~R-~~YEq~~~~FP~s~r~W~~yi~~-El~skdfe~VEkLF~RCLvkvLn-lDLW~lYl~YVR~~~~~~~~~r~~m 110 (656)
T KOG1914|consen 34 PIDKVR-ETYEQLVNVFPSSPRAWKLYIER-ELASKDFESVEKLFSRCLVKVLN-LDLWKLYLSYVRETKGKLFGYREKM 110 (656)
T ss_pred CHHHHH-HHHHHHhccCCCCcHHHHHHHHH-HHHhhhHHHHHHHHHHHHHHHhh-HhHHHHHHHHHHHHccCcchHHHHH
Confidence 345555 88999999999999999998888 89999999999999999865333 44443 3455555566666655555
Q ss_pred HHHHHHHhhhhc-cc----chhhhHHHHHHhhhccccccccCCCccccccCcccHHHHHHHHHHhhhcCccchH-HHH--
Q 012143 99 EKAEEILLRCEA-DI----ARPELLSLVQIHHAQCLLPESSGDNSLDKELEPEELEEILSKLKESMQSDTRQAV-VWN-- 170 (470)
Q Consensus 99 ~~al~~~~~~~~-~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~p~~~~-~~~-- 170 (470)
-+|.+..-..-. .+ ...++......+.. +..+-.+.+++.-...|++++..--.+.+ .|.
T Consensus 111 ~qAy~f~l~kig~di~s~siW~eYi~FL~~vea------------~gk~ee~QRI~~vRriYqral~tPm~nlEkLW~DY 178 (656)
T KOG1914|consen 111 VQAYDFALEKIGMDIKSYSIWDEYINFLEGVEA------------VGKYEENQRITAVRRIYQRALVTPMHNLEKLWKDY 178 (656)
T ss_pred HHHHHHHHHHhccCcccchhHHHHHHHHHcccc------------cccHHHHHHHHHHHHHHHHHhcCccccHHHHHHHH
Confidence 555544221110 00 01111111111111 12245566888889999999875333321 111
Q ss_pred -----------HHHHHHHHcCChHHHHHHHHHHhhc-------CCC----C-------hHHHHHHHHHHHHcC------C
Q 012143 171 -----------TLGLILLKSGRLQSSISVLSSLLAV-------DPN----N-------CDCIGNLGIAYFQSG------D 215 (470)
Q Consensus 171 -----------~l~~~~~~~~~~~~A~~~~~~a~~~-------~~~----~-------~~~~~~la~~~~~~g------~ 215 (470)
..-.+-.....|..|...+++...+ +|. . .+.|.++...-...+ .
T Consensus 179 ~~fE~~IN~~tarK~i~e~s~~Ym~AR~~~qel~~lt~GL~r~~~~vp~~~T~~e~~qv~~W~n~I~wEksNpL~t~~~~ 258 (656)
T KOG1914|consen 179 EAFEQEINIITARKFIGERSPEYMNARRVYQELQNLTRGLNRNAPAVPPKGTKDEIQQVELWKNWIKWEKSNPLRTLDGT 258 (656)
T ss_pred HHHHHHHHHHHHHHHHHhhCHHHHHHHHHHHHHHHHHhhhcccCCCCCCCCChHHHHHHHHHHHHHHHHhcCCccccccc
Confidence 1111223345577777777765443 221 1 112333332221111 1
Q ss_pred --HHHHHHHHHHHHhhCCCChHHHHHHHHHHHhhhcccccccccchhhhhHHHhcCC-------HHHHHHHHHHHHhcCC
Q 012143 216 --MEQSAKCFQDLILKDQNHPAALINYAALLLCKYGSVLAGAGANTGEGACLDQASA-------VNVAKECLLAALKADP 286 (470)
Q Consensus 216 --~~~A~~~~~~~l~~~p~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-------~~~A~~~~~~~~~~~p 286 (470)
...-.-.|++++..-+-+++.|+..+..+.. .+.++...|+ -+++..+|++++..--
T Consensus 259 ~~~~Rv~yayeQ~ll~l~~~peiWy~~s~yl~~--------------~s~l~~~~~d~~~a~~~t~e~~~~yEr~I~~l~ 324 (656)
T KOG1914|consen 259 MLTRRVMYAYEQCLLYLGYHPEIWYDYSMYLIE--------------ISDLLTEKGDVPDAKSLTDEAASIYERAIEGLL 324 (656)
T ss_pred HHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHH--------------hhHHHHHhcccccchhhHHHHHHHHHHHHHHHH
Confidence 1223345777887778888888877776653 2333344444 5677888888876433
Q ss_pred C-CHHHHHHHHHHHHHcCC---hhHHHHHHHHHHhcCCCcccHHHHHHHHHHHHhhhccCchHHhhhhHHHHHHHhhcCC
Q 012143 287 K-AAHIWANLANAYYLTGD---HRSSGKCLEKAAKLEPNCMSTRYAVAVSRIKDAERSQEPTEQLSWAGNEMASILREGD 362 (470)
Q Consensus 287 ~-~~~~~~~la~~~~~~g~---~~~A~~~~~~a~~~~p~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 362 (470)
. +...++.++..-...-+ ++.-...+.+.+.+...++...+..-+..+... ...+..+..+....
T Consensus 325 ~~~~~Ly~~~a~~eE~~~~~n~~~~~~~~~~~ll~~~~~~~tLv~~~~mn~irR~-----------eGlkaaR~iF~kaR 393 (656)
T KOG1914|consen 325 KENKLLYFALADYEESRYDDNKEKKVHEIYNKLLKIEDIDLTLVYCQYMNFIRRA-----------EGLKAARKIFKKAR 393 (656)
T ss_pred HHHHHHHHHHHhhHHHhcccchhhhhHHHHHHHHhhhccCCceehhHHHHHHHHh-----------hhHHHHHHHHHHHh
Confidence 2 33344444433322222 566667777777665444432222111111111 11111222222221
Q ss_pred CCCCCcHHHHHHHHH-HHhccccHHHHHHHHHHHhcchhhhhHh--hHHHHHHHhccHHHHHHHHHHHHhc--CCC-cHH
Q 012143 363 PVQIEPPIAWAGFAA-VQKTHHEVAAAFETEENELSKMEECAGA--GESAFLDQASAVNVAKECLLAALKA--DPK-AAH 436 (470)
Q Consensus 363 ~~~~~~~~~~~~l~~-~~~~~~~~~~A~~~~~~~~~~~~~~~~~--~l~~~~~~~~~~~~A~~~~~~al~~--~p~-~~~ 436 (470)
........++..-+. -|..+++.+-|...|...+........+ .....+...++-..|...|++++.. .|+ ...
T Consensus 394 ~~~r~~hhVfVa~A~mEy~cskD~~~AfrIFeLGLkkf~d~p~yv~~YldfL~~lNdd~N~R~LFEr~l~s~l~~~ks~~ 473 (656)
T KOG1914|consen 394 EDKRTRHHVFVAAALMEYYCSKDKETAFRIFELGLKKFGDSPEYVLKYLDFLSHLNDDNNARALFERVLTSVLSADKSKE 473 (656)
T ss_pred hccCCcchhhHHHHHHHHHhcCChhHHHHHHHHHHHhcCCChHHHHHHHHHHHHhCcchhHHHHHHHHHhccCChhhhHH
Confidence 111111233333333 3566789999999999988855554433 4445677899999999999999987 443 357
Q ss_pred HHHHHHHHHHHcCChHHHHHHHHHHHHhhc
Q 012143 437 IWANLANAYYLTGDHRSSGKCLEKVLMVYC 466 (470)
Q Consensus 437 ~~~~la~~~~~~g~~~~A~~~~~~al~~~~ 466 (470)
+|..+-..-..-|+....++.=++-...++
T Consensus 474 Iw~r~l~yES~vGdL~si~~lekR~~~af~ 503 (656)
T KOG1914|consen 474 IWDRMLEYESNVGDLNSILKLEKRRFTAFP 503 (656)
T ss_pred HHHHHHHHHHhcccHHHHHHHHHHHHHhcc
Confidence 888887777888999988888877777766
|
|
| >PF13174 TPR_6: Tetratricopeptide repeat; PDB: 3QKY_A 2XEV_A 3URZ_B 2Q7F_A | Back alignment and domain information |
|---|
Probab=97.18 E-value=0.00077 Score=36.70 Aligned_cols=31 Identities=26% Similarity=0.519 Sum_probs=16.7
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHhhCCC
Q 012143 202 CIGNLGIAYFQSGDMEQSAKCFQDLILKDQN 232 (470)
Q Consensus 202 ~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~ 232 (470)
+++.+|.++...|++++|+..|++++...|+
T Consensus 2 a~~~~a~~~~~~g~~~~A~~~~~~~~~~~P~ 32 (33)
T PF13174_consen 2 ALYRLARCYYKLGDYDEAIEYFQRLIKRYPD 32 (33)
T ss_dssp HHHHHHHHHHHHCHHHHHHHHHHHHHHHSTT
T ss_pred HHHHHHHHHHHccCHHHHHHHHHHHHHHCcC
Confidence 3455555555555555555555555555554
|
|
| >PF14561 TPR_20: Tetratricopeptide repeat; PDB: 3QOU_A 2R5S_A 3QDN_B | Back alignment and domain information |
|---|
Probab=97.10 E-value=0.0088 Score=41.56 Aligned_cols=76 Identities=13% Similarity=0.124 Sum_probs=54.8
Q ss_pred HHHHHHHHhhhcCccchHHHHHHHHHHHHcCChHHHHHHHHHHhhcCCCC--hHHHHHHHHHHHHcCCHHHHHHHHHH
Q 012143 150 EILSKLKESMQSDTRQAVVWNTLGLILLKSGRLQSSISVLSSLLAVDPNN--CDCIGNLGIAYFQSGDMEQSAKCFQD 225 (470)
Q Consensus 150 ~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~--~~~~~~la~~~~~~g~~~~A~~~~~~ 225 (470)
..+..+++.+..+|++..+.+.+|..+...|++++|++.+-.++..+++. ..+...+-.++..+|.-+.-...|++
T Consensus 6 ~~~~al~~~~a~~P~D~~ar~~lA~~~~~~g~~e~Al~~Ll~~v~~dr~~~~~~ar~~ll~~f~~lg~~~plv~~~RR 83 (90)
T PF14561_consen 6 PDIAALEAALAANPDDLDARYALADALLAAGDYEEALDQLLELVRRDRDYEDDAARKRLLDIFELLGPGDPLVSEYRR 83 (90)
T ss_dssp HHHHHHHHHHHHSTT-HHHHHHHHHHHHHTT-HHHHHHHHHHHHCC-TTCCCCHHHHHHHHHHHHH-TT-HHHHHHHH
T ss_pred ccHHHHHHHHHcCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCccccccHHHHHHHHHHHHcCCCChHHHHHHH
Confidence 34667888889999999999999999999999999999999999998765 45556666666666655444444443
|
|
| >KOG3824 consensus Huntingtin interacting protein HYPE [General function prediction only] | Back alignment and domain information |
|---|
Probab=97.09 E-value=0.0019 Score=54.37 Aligned_cols=66 Identities=11% Similarity=0.193 Sum_probs=51.1
Q ss_pred CcccHHHHHHHHHHhhhcCccchHHHHHHHHHHHHcCChHHHHHHHHHHhhcCCCChHHHHHHHHH
Q 012143 144 EPEELEEILSKLKESMQSDTRQAVVWNTLGLILLKSGRLQSSISVLSSLLAVDPNNCDCIGNLGIA 209 (470)
Q Consensus 144 ~~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~la~~ 209 (470)
+.|+.++|..+|+-++...|++++++..+|......++.-+|-.+|-+++.++|.+..++.+.+..
T Consensus 128 ~~Gk~ekA~~lfeHAlalaP~~p~~L~e~G~f~E~~~~iv~ADq~Y~~ALtisP~nseALvnR~RT 193 (472)
T KOG3824|consen 128 KDGKLEKAMTLFEHALALAPTNPQILIEMGQFREMHNEIVEADQCYVKALTISPGNSEALVNRART 193 (472)
T ss_pred hccchHHHHHHHHHHHhcCCCCHHHHHHHhHHHHhhhhhHhhhhhhheeeeeCCCchHHHhhhhcc
Confidence 556678888888888888888888888888887777888888888888888888877777666543
|
|
| >KOG4507 consensus Uncharacterized conserved protein, contains TPR repeats [Function unknown] | Back alignment and domain information |
|---|
Probab=97.04 E-value=0.0041 Score=57.27 Aligned_cols=103 Identities=14% Similarity=0.120 Sum_probs=91.0
Q ss_pred ccCcccHHHHHHHHHHhhhcCccchH-HHHHHHHHHHHcCChHHHHHHHHHHhhcCCCChHHHHHHHHHHHHcCCHHHHH
Q 012143 142 ELEPEELEEILSKLKESMQSDTRQAV-VWNTLGLILLKSGRLQSSISVLSSLLAVDPNNCDCIGNLGIAYFQSGDMEQSA 220 (470)
Q Consensus 142 ~~~~~~~~~A~~~~~~~~~~~p~~~~-~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~la~~~~~~g~~~~A~ 220 (470)
....|+...|+.++..++...|.... ...+++.+....|-...|-..+.+++.+....+-.++.+|..+..+.+.+.|+
T Consensus 617 wr~~gn~~~a~~cl~~a~~~~p~~~~v~~v~la~~~~~~~~~~da~~~l~q~l~~~~sepl~~~~~g~~~l~l~~i~~a~ 696 (886)
T KOG4507|consen 617 WRAVGNSTFAIACLQRALNLAPLQQDVPLVNLANLLIHYGLHLDATKLLLQALAINSSEPLTFLSLGNAYLALKNISGAL 696 (886)
T ss_pred eeecCCcHHHHHHHHHHhccChhhhcccHHHHHHHHHHhhhhccHHHHHHHHHhhcccCchHHHhcchhHHHHhhhHHHH
Confidence 34568889999999999999886543 57889999999999999999999999999888999999999999999999999
Q ss_pred HHHHHHHhhCCCChHHHHHHHHHH
Q 012143 221 KCFQDLILKDQNHPAALINYAALL 244 (470)
Q Consensus 221 ~~~~~~l~~~p~~~~~~~~l~~~~ 244 (470)
+.|+.+++.+|+++.....+-.+.
T Consensus 697 ~~~~~a~~~~~~~~~~~~~l~~i~ 720 (886)
T KOG4507|consen 697 EAFRQALKLTTKCPECENSLKLIR 720 (886)
T ss_pred HHHHHHHhcCCCChhhHHHHHHHH
Confidence 999999999999998766655443
|
|
| >COG4649 Uncharacterized protein conserved in bacteria [Function unknown] | Back alignment and domain information |
|---|
Probab=96.98 E-value=0.11 Score=40.22 Aligned_cols=159 Identities=11% Similarity=0.104 Sum_probs=97.8
Q ss_pred HHHHHHhCChhHHHHHHHHHHHHHhhhhcccchhhhHHHHHHhhhccccccccCCCccccccCcccHHHHHHHHHHhhhc
Q 012143 82 GLMYQRLGQPLKAVSSYEKAEEILLRCEADIARPELLSLVQIHHAQCLLPESSGDNSLDKELEPEELEEILSKLKESMQS 161 (470)
Q Consensus 82 ~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~ 161 (470)
|.-|+..+.-.++-..|..++++. +.+..++|+..|...-+.
T Consensus 46 gy~yw~~s~as~sgd~flaAL~lA--------------------------------------~~~k~d~Alaaf~~lekt 87 (221)
T COG4649 46 GYTYWQTSRASKSGDAFLAALKLA--------------------------------------QENKTDDALAAFTDLEKT 87 (221)
T ss_pred eeehhcccccccchHHHHHHHHHH--------------------------------------HcCCchHHHHHHHHHHhc
Confidence 455667777777778888887763 233447777777766554
Q ss_pred Cccc--hHHHHHHHHHHHHcCChHHHHHHHHHHhhcCCCC----hHHHHHHHHHHHHcCCHHHHHHHHHHHH-hhCCCCh
Q 012143 162 DTRQ--AVVWNTLGLILLKSGRLQSSISVLSSLLAVDPNN----CDCIGNLGIAYFQSGDMEQSAKCFQDLI-LKDQNHP 234 (470)
Q Consensus 162 ~p~~--~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~----~~~~~~la~~~~~~g~~~~A~~~~~~~l-~~~p~~~ 234 (470)
.-.. ..+.+..|.+....|+-..|+..|..+-...|.- ..+...-+.++...|-|++-....+..- ..+|-..
T Consensus 88 g~g~YpvLA~mr~at~~a~kgdta~AV~aFdeia~dt~~P~~~rd~ARlraa~lLvD~gsy~dV~srvepLa~d~n~mR~ 167 (221)
T COG4649 88 GYGSYPVLARMRAATLLAQKGDTAAAVAAFDEIAADTSIPQIGRDLARLRAAYLLVDNGSYDDVSSRVEPLAGDGNPMRH 167 (221)
T ss_pred CCCcchHHHHHHHHHHHhhcccHHHHHHHHHHHhccCCCcchhhHHHHHHHHHHHhccccHHHHHHHhhhccCCCChhHH
Confidence 4322 3356667888888888888888888876543321 1244555666777788877666555432 2233334
Q ss_pred HHHHHHHHHHHhhhcccccccccchhhhhHHHhcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHH
Q 012143 235 AALINYAALLLCKYGSVLAGAGANTGEGACLDQASAVNVAKECLLAALKADPKAAHIWANLANAYY 300 (470)
Q Consensus 235 ~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~la~~~~ 300 (470)
.+...||..-+ +.|++.+|.++|.+... +...|....+.+.+..
T Consensus 168 sArEALglAa~---------------------kagd~a~A~~~F~qia~-Da~aprnirqRAq~ml 211 (221)
T COG4649 168 SAREALGLAAY---------------------KAGDFAKAKSWFVQIAN-DAQAPRNIRQRAQIML 211 (221)
T ss_pred HHHHHHhHHHH---------------------hccchHHHHHHHHHHHc-cccCcHHHHHHHHHHH
Confidence 44445554444 67777778777777665 4444555555555443
|
|
| >PRK10941 hypothetical protein; Provisional | Back alignment and domain information |
|---|
Probab=96.96 E-value=0.011 Score=50.67 Aligned_cols=76 Identities=17% Similarity=0.232 Sum_probs=68.6
Q ss_pred HHHHHHHHHHHcCChHHHHHHHHHHhhcCCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCChHHHHHHHHH
Q 012143 168 VWNTLGLILLKSGRLQSSISVLSSLLAVDPNNCDCIGNLGIAYFQSGDMEQSAKCFQDLILKDQNHPAALINYAAL 243 (470)
Q Consensus 168 ~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~l~~~ 243 (470)
.+.++-.+|.+.++++.|+.+.+..+.+.|+++.-+...|.+|.++|.+..|...++..++..|+++.+-.....+
T Consensus 183 ml~nLK~~~~~~~~~~~AL~~~e~ll~l~P~dp~e~RDRGll~~qL~c~~~A~~DL~~fl~~~P~dp~a~~ik~ql 258 (269)
T PRK10941 183 LLDTLKAALMEEKQMELALRASEALLQFDPEDPYEIRDRGLIYAQLDCEHVALSDLSYFVEQCPEDPISEMIRAQI 258 (269)
T ss_pred HHHHHHHHHHHcCcHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCcHHHHHHHHHHHHhCCCchhHHHHHHHH
Confidence 4566778899999999999999999999999999999999999999999999999999999999999876544433
|
|
| >PF10345 Cohesin_load: Cohesin loading factor; InterPro: IPR019440 Cohesin loading factor is a conserved protein that has been characterised in fungi | Back alignment and domain information |
|---|
Probab=96.94 E-value=0.47 Score=46.84 Aligned_cols=267 Identities=15% Similarity=0.084 Sum_probs=152.3
Q ss_pred hhhhhhhHHHHHHHHHHHHhcCCC--Ccc----hhhhcccchhhhhcChhhHHHHHHHHHHhCCC---Chh-HHHHH--H
Q 012143 15 INKLGKCRSRISSKMDSALEFGVD--ADG----DQSGLGTSSSSREEKVSSLKTGLVHVARKMPK---NAH-AHFLL--G 82 (470)
Q Consensus 15 ~~~~g~~~~a~~~~~~~~l~~~p~--~~~----~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~p~---~~~-~~~~l--~ 82 (470)
+.+..+.+.|- +.+++++.+... ... ..+.++.+ +.+.+... |...+++.++.... .+. ..+.+ .
T Consensus 70 ~~eT~n~~~Ae-~~L~k~~~l~~~~~~~d~k~~~~~ll~~i-~~~~~~~~-a~~~l~~~I~~~~~~~~~~w~~~frll~~ 146 (608)
T PF10345_consen 70 LEETENLDLAE-TYLEKAILLCERHRLTDLKFRCQFLLARI-YFKTNPKA-ALKNLDKAIEDSETYGHSAWYYAFRLLKI 146 (608)
T ss_pred HHHcCCHHHHH-HHHHHHHHhccccchHHHHHHHHHHHHHH-HHhcCHHH-HHHHHHHHHHHHhccCchhHHHHHHHHHH
Confidence 44677888888 889998766533 221 23344555 55555555 99999998875443 222 22222 3
Q ss_pred HHHHHhCChhHHHHHHHHHHHHHhhhhcccchhhhHHHHHHhhhccccccccCCCccccccCcccHHHHHHHHHHhhhc-
Q 012143 83 LMYQRLGQPLKAVSSYEKAEEILLRCEADIARPELLSLVQIHHAQCLLPESSGDNSLDKELEPEELEEILSKLKESMQS- 161 (470)
Q Consensus 83 ~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~- 161 (470)
......+++..|++.++......-.. ..+...-. +....+.+. +..+..+++++.++++...
T Consensus 147 ~l~~~~~d~~~Al~~L~~~~~~a~~~----~d~~~~v~--~~l~~~~l~-----------l~~~~~~d~~~~l~~~~~~~ 209 (608)
T PF10345_consen 147 QLALQHKDYNAALENLQSIAQLANQR----GDPAVFVL--ASLSEALLH-----------LRRGSPDDVLELLQRAIAQA 209 (608)
T ss_pred HHHHhcccHHHHHHHHHHHHHHhhhc----CCHHHHHH--HHHHHHHHH-----------hcCCCchhHHHHHHHHHHHH
Confidence 33333479999999999998864211 11222211 111222222 2334446666666655321
Q ss_pred -----C----ccchHHHHHHHH--HHHHcCChHHHHHHHHHHhh---c---CC-------C---------------C-h-
Q 012143 162 -----D----TRQAVVWNTLGL--ILLKSGRLQSSISVLSSLLA---V---DP-------N---------------N-C- 200 (470)
Q Consensus 162 -----~----p~~~~~~~~l~~--~~~~~~~~~~A~~~~~~a~~---~---~~-------~---------------~-~- 200 (470)
+ +....++..+-. ++...|+++.+...+++.-. . .| + . +
T Consensus 210 ~~~q~~~~~~~~qL~~~~lll~l~~~l~~~~~~~~~~~L~~lq~~~~~~~~~~~w~~~~~d~~i~l~~~~~~~~~~~~~~ 289 (608)
T PF10345_consen 210 RSLQLDPSVHIPQLKALFLLLDLCCSLQQGDVKNSKQKLKQLQQFLDEIKKSPSWPSWDEDGSIPLNIGEGSSNSGGTPL 289 (608)
T ss_pred hhcccCCCCCcHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhhcCccCCCcCCCeeEEeecccccccCCCcee
Confidence 1 122334444333 45667777777666554322 1 11 0 0 0
Q ss_pred ------------HHHHHHHHHHHHcCCHHHHHHHHHHHHhhC-------CCCh----------HHHHHHHHHHHhhhccc
Q 012143 201 ------------DCIGNLGIAYFQSGDMEQSAKCFQDLILKD-------QNHP----------AALINYAALLLCKYGSV 251 (470)
Q Consensus 201 ------------~~~~~la~~~~~~g~~~~A~~~~~~~l~~~-------p~~~----------~~~~~l~~~~~~~~~~~ 251 (470)
-++..-|.+....|..++|.++++++++.- |..+ ..|......+
T Consensus 290 ~f~wl~~~~l~~L~y~lS~l~~~~~~~~~ks~k~~~k~l~~i~~~~~~~~~~~~~sl~~~~~~~~~~~~l~~~------- 362 (608)
T PF10345_consen 290 VFSWLPKEELYALVYFLSGLHNLYKGSMDKSEKFLEKALKQIEKLKIKSPSAPSESLSEASERIQWLRYLQCY------- 362 (608)
T ss_pred EEeecCHHHHHHHHHHHHHHHHhhccCchHHHHHHHHHHHHHHHhhccCCCCCCcCHHHHHHhHHHHHHHHHH-------
Confidence 134455666777788878988888887531 1111 1111111111
Q ss_pred ccccccchhhhhHHHhcCCHHHHHHHHHHHHhcC---CC------CHHHHHHHHHHHHHcCChhHHHHHHH
Q 012143 252 LAGAGANTGEGACLDQASAVNVAKECLLAALKAD---PK------AAHIWANLANAYYLTGDHRSSGKCLE 313 (470)
Q Consensus 252 ~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~---p~------~~~~~~~la~~~~~~g~~~~A~~~~~ 313 (470)
.....+-+..-.+++..|......+.... |. .+..++..|..+...|+.+.|...|.
T Consensus 363 -----~~~y~~~~~~~~~~~~~a~~~l~~~~~~~~~~~~~~~~~~~~~~~yL~gl~~q~~g~l~~A~~~y~ 428 (608)
T PF10345_consen 363 -----LLFYQIWCNFIRGDWSKATQELEFMRQLCQRSPSKLYESLYPLLHYLLGLYYQSTGDLEAALYQYQ 428 (608)
T ss_pred -----HHHHHHHHHHHCcCHHHHHHHHHHHHHHHhcCccchhhhhhHHHHHHHHHHHHHcCCHHHHHHHHh
Confidence 12234556667899999998888776542 22 47788999999999999999999998
|
It is associated with the cohesin complex and is required in G1 for cohesin binding to chromosomes, but is dispensable in G2 when cohesion has been established. It is often referred to as Ssl3 in Schizosaccharomyces pombe (Fission yeast), and Scc4 in Saccharomyces cerevisiae (Baker's yeast). It complexes with Mis4 []. |
| >KOG1464 consensus COP9 signalosome, subunit CSN2 [Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=96.94 E-value=0.19 Score=42.10 Aligned_cols=215 Identities=12% Similarity=0.172 Sum_probs=132.1
Q ss_pred hhcChhhHHHHHHHHHHhCCCChh----HHHHHHHHHHHhCChhHHHHHHHHHHHHHhhhhcc----cchhhhHHHHHHh
Q 012143 53 REEKVSSLKTGLVHVARKMPKNAH----AHFLLGLMYQRLGQPLKAVSSYEKAEEILLRCEAD----IARPELLSLVQIH 124 (470)
Q Consensus 53 ~~~~~~~A~~~~~~~l~~~p~~~~----~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~----~~~~~~~~~~~~~ 124 (470)
.....++|...|++++++.|...+ ++-....+++.+|++++-+..|.+.+..-...-.. ......+.....
T Consensus 39 ~e~~p~~Al~sF~kVlelEgEKgeWGFKALKQmiKI~f~l~~~~eMm~~Y~qlLTYIkSAVTrNySEKsIN~IlDyiSt- 117 (440)
T KOG1464|consen 39 KEDEPKEALSSFQKVLELEGEKGEWGFKALKQMIKINFRLGNYKEMMERYKQLLTYIKSAVTRNYSEKSINSILDYIST- 117 (440)
T ss_pred cccCHHHHHHHHHHHHhcccccchhHHHHHHHHHHHHhccccHHHHHHHHHHHHHHHHHHHhccccHHHHHHHHHHHhh-
Confidence 455889999999999999987654 67778899999999999999999988642211000 000111111111
Q ss_pred hhccccccccCCCccccccCcccHHHHHHHHHHhhhc--CccchHHH----HHHHHHHHHcCChHHHHHHHHHHhhcCCC
Q 012143 125 HAQCLLPESSGDNSLDKELEPEELEEILSKLKESMQS--DTRQAVVW----NTLGLILLKSGRLQSSISVLSSLLAVDPN 198 (470)
Q Consensus 125 ~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~--~p~~~~~~----~~l~~~~~~~~~~~~A~~~~~~a~~~~~~ 198 (470)
..+.+--...|+..+.. +..+...| ..+|.+|+..+.|.+-.+.+++.-.....
T Consensus 118 --------------------S~~m~LLQ~FYeTTL~ALkdAKNeRLWFKTNtKLgkl~fd~~e~~kl~KIlkqLh~SCq~ 177 (440)
T KOG1464|consen 118 --------------------SKNMDLLQEFYETTLDALKDAKNERLWFKTNTKLGKLYFDRGEYTKLQKILKQLHQSCQT 177 (440)
T ss_pred --------------------hhhhHHHHHHHHHHHHHHHhhhcceeeeeccchHhhhheeHHHHHHHHHHHHHHHHHhcc
Confidence 11112222223222211 12233333 35899999999998888877776543211
Q ss_pred ------------ChHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCChHHHHHHHHHHHhhhcccccccccchhhhhHHH
Q 012143 199 ------------NCDCIGNLGIAYFQSGDMEQSAKCFQDLILKDQNHPAALINYAALLLCKYGSVLAGAGANTGEGACLD 266 (470)
Q Consensus 199 ------------~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~ 266 (470)
-.++|..-...|..+.+-.+-...|++++.+...-|.. ..+|.+..+. |..+.
T Consensus 178 edGedD~kKGtQLLEiYAlEIQmYT~qKnNKkLK~lYeqalhiKSAIPHP-lImGvIRECG--------------GKMHl 242 (440)
T KOG1464|consen 178 EDGEDDQKKGTQLLEIYALEIQMYTEQKNNKKLKALYEQALHIKSAIPHP-LIMGVIRECG--------------GKMHL 242 (440)
T ss_pred ccCchhhhccchhhhhHhhHhhhhhhhcccHHHHHHHHHHHHhhccCCch-HHHhHHHHcC--------------Ccccc
Confidence 13455566678888888888888999999876544332 2345554432 45666
Q ss_pred hcCCHHHHHHHHHHHHhcCCC-----CHH--HHHHHHHHHHHcC
Q 012143 267 QASAVNVAKECLLAALKADPK-----AAH--IWANLANAYYLTG 303 (470)
Q Consensus 267 ~~~~~~~A~~~~~~~~~~~p~-----~~~--~~~~la~~~~~~g 303 (470)
+.|++++|-.-|-.+++.... ... -|.-+|..+.+.|
T Consensus 243 reg~fe~AhTDFFEAFKNYDEsGspRRttCLKYLVLANMLmkS~ 286 (440)
T KOG1464|consen 243 REGEFEKAHTDFFEAFKNYDESGSPRRTTCLKYLVLANMLMKSG 286 (440)
T ss_pred ccchHHHHHhHHHHHHhcccccCCcchhHHHHHHHHHHHHHHcC
Confidence 889999999888888876332 222 2445566665554
|
|
| >PF14853 Fis1_TPR_C: Fis1 C-terminal tetratricopeptide repeat; PDB: 1IYG_A 1PC2_A 1NZN_A 3UUX_C 1Y8M_A 2PQR_A 2PQN_A 3O48_A | Back alignment and domain information |
|---|
Probab=96.88 E-value=0.0069 Score=36.90 Aligned_cols=39 Identities=21% Similarity=0.380 Sum_probs=26.2
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCChHHHHH
Q 012143 201 DCIGNLGIAYFQSGDMEQSAKCFQDLILKDQNHPAALIN 239 (470)
Q Consensus 201 ~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~ 239 (470)
+.++.+|..+.++|+|++|..+.+.+++.+|++..+...
T Consensus 2 d~lY~lAig~ykl~~Y~~A~~~~~~lL~~eP~N~Qa~~L 40 (53)
T PF14853_consen 2 DCLYYLAIGHYKLGEYEKARRYCDALLEIEPDNRQAQSL 40 (53)
T ss_dssp HHHHHHHHHHHHTT-HHHHHHHHHHHHHHTTS-HHHHHH
T ss_pred hhHHHHHHHHHHhhhHHHHHHHHHHHHhhCCCcHHHHHH
Confidence 356677777777777777777777777777777766443
|
|
| >KOG2041 consensus WD40 repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=96.87 E-value=0.32 Score=46.48 Aligned_cols=241 Identities=12% Similarity=0.027 Sum_probs=133.1
Q ss_pred hhcCccchHHHHHHHHHHHHcCChHHHHHHHHHHhhcCCCC--------hHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC
Q 012143 159 MQSDTRQAVVWNTLGLILLKSGRLQSSISVLSSLLAVDPNN--------CDCIGNLGIAYFQSGDMEQSAKCFQDLILKD 230 (470)
Q Consensus 159 ~~~~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~--------~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~ 230 (470)
++.+| ++..|..++......-.++.|...|-++-....-. ..--...+.+-.--|++++|.+.|-.+-+
T Consensus 686 iEdnP-HprLWrllAe~Al~Kl~l~tAE~AFVrc~dY~Gik~vkrl~~i~s~~~q~aei~~~~g~feeaek~yld~dr-- 762 (1189)
T KOG2041|consen 686 IEDNP-HPRLWRLLAEYALFKLALDTAEHAFVRCGDYAGIKLVKRLRTIHSKEQQRAEISAFYGEFEEAEKLYLDADR-- 762 (1189)
T ss_pred HhcCC-chHHHHHHHHHHHHHHhhhhHhhhhhhhccccchhHHHHhhhhhhHHHHhHhHhhhhcchhHhhhhhhccch--
Confidence 33344 47888888888777777777777776643321100 00012334444556888888887754422
Q ss_pred CCChHHHHHHHHHHHhhhcccccccccchhhhhHHHhcCCHHHHHHHHHHHHhcCC--CCHHHHHHHHHHHHHcCChhHH
Q 012143 231 QNHPAALINYAALLLCKYGSVLAGAGANTGEGACLDQASAVNVAKECLLAALKADP--KAAHIWANLANAYYLTGDHRSS 308 (470)
Q Consensus 231 p~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~p--~~~~~~~~la~~~~~~g~~~~A 308 (470)
. .++.-+. .+.|++-...+.++..-.-+. ..-.++.++|..+..+..|++|
T Consensus 763 -r------DLAielr--------------------~klgDwfrV~qL~r~g~~d~dD~~~e~A~r~ig~~fa~~~~We~A 815 (1189)
T KOG2041|consen 763 -R------DLAIELR--------------------KKLGDWFRVYQLIRNGGSDDDDEGKEDAFRNIGETFAEMMEWEEA 815 (1189)
T ss_pred -h------hhhHHHH--------------------HhhhhHHHHHHHHHccCCCcchHHHHHHHHHHHHHHHHHHHHHHH
Confidence 1 1121111 256666666665554322111 1357899999999999999999
Q ss_pred HHHHHHHHhcCCCcccHHHHHHHHHHHHhhhccCchHHhhhhHHHHHHHhhcCCCCCCCcHHHHHHHHHHHhccccHHHH
Q 012143 309 GKCLEKAAKLEPNCMSTRYAVAVSRIKDAERSQEPTEQLSWAGNEMASILREGDPVQIEPPIAWAGFAAVQKTHHEVAAA 388 (470)
Q Consensus 309 ~~~~~~a~~~~p~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A 388 (470)
.++|...-... +....++.+.. +..+...... .|++....-.+|..+...|.-++|
T Consensus 816 ~~yY~~~~~~e-~~~ecly~le~-------------------f~~LE~la~~----Lpe~s~llp~~a~mf~svGMC~qA 871 (1189)
T KOG2041|consen 816 AKYYSYCGDTE-NQIECLYRLEL-------------------FGELEVLART----LPEDSELLPVMADMFTSVGMCDQA 871 (1189)
T ss_pred HHHHHhccchH-hHHHHHHHHHh-------------------hhhHHHHHHh----cCcccchHHHHHHHHHhhchHHHH
Confidence 99998764322 11222222211 0111111111 123445666788888888999999
Q ss_pred HHHHHHHhcchhhhhHhhHHHHHHHhccHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHcCChHHHHHHHHHH
Q 012143 389 FETEENELSKMEECAGAGESAFLDQASAVNVAKECLLAALKADPKAAHIWANLANAYYLTGDHRSSGKCLEKV 461 (470)
Q Consensus 389 ~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~a 461 (470)
.+.|.+.-.|... . .....++++.+|++.-++- .-|.-.......+--+...++.-+|++..+++
T Consensus 872 V~a~Lr~s~pkaA--v----~tCv~LnQW~~avelaq~~--~l~qv~tliak~aaqll~~~~~~eaIe~~Rka 936 (1189)
T KOG2041|consen 872 VEAYLRRSLPKAA--V----HTCVELNQWGEAVELAQRF--QLPQVQTLIAKQAAQLLADANHMEAIEKDRKA 936 (1189)
T ss_pred HHHHHhccCcHHH--H----HHHHHHHHHHHHHHHHHhc--cchhHHHHHHHHHHHHHhhcchHHHHHHhhhc
Confidence 9888764443221 1 1344566677777655432 11322233333334445666777777776666
|
|
| >KOG3824 consensus Huntingtin interacting protein HYPE [General function prediction only] | Back alignment and domain information |
|---|
Probab=96.83 E-value=0.0048 Score=52.09 Aligned_cols=73 Identities=18% Similarity=0.296 Sum_probs=65.6
Q ss_pred HHHHHHHHcCChHHHHHHHHHHhhcCCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCChHHHHHHHHH
Q 012143 171 TLGLILLKSGRLQSSISVLSSLLAVDPNNCDCIGNLGIAYFQSGDMEQSAKCFQDLILKDQNHPAALINYAAL 243 (470)
Q Consensus 171 ~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~l~~~ 243 (470)
..+.-....|+.++|...|+.++.+.|.+++++..+|......++.-+|-.+|-+++.+.|.+.+++.+....
T Consensus 121 ~~A~~~~~~Gk~ekA~~lfeHAlalaP~~p~~L~e~G~f~E~~~~iv~ADq~Y~~ALtisP~nseALvnR~RT 193 (472)
T KOG3824|consen 121 KAAGRSRKDGKLEKAMTLFEHALALAPTNPQILIEMGQFREMHNEIVEADQCYVKALTISPGNSEALVNRART 193 (472)
T ss_pred HHHHHHHhccchHHHHHHHHHHHhcCCCCHHHHHHHhHHHHhhhhhHhhhhhhheeeeeCCCchHHHhhhhcc
Confidence 3445566789999999999999999999999999999999999999999999999999999999988766543
|
|
| >PF09613 HrpB1_HrpK: Bacterial type III secretion protein (HrpB1_HrpK); InterPro: IPR013394 This family of proteins is encoded by genes found within type III secretion operons in a limited range of species including Xanthomonas, Ralstonia and Burkholderia | Back alignment and domain information |
|---|
Probab=96.81 E-value=0.015 Score=44.78 Aligned_cols=75 Identities=13% Similarity=0.094 Sum_probs=65.4
Q ss_pred cCcccHHHHHHHHHHhhhcCccchHHHHHHHHHHHHcCChHHHHHHHHHHhhcCCCChHHHHHHHHHHHHcCCHH
Q 012143 143 LEPEELEEILSKLKESMQSDTRQAVVWNTLGLILLKSGRLQSSISVLSSLLAVDPNNCDCIGNLGIAYFQSGDME 217 (470)
Q Consensus 143 ~~~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~la~~~~~~g~~~ 217 (470)
+..++.+++...+..+-...|..+..-..-|.++...|+|.+|+..++.+....|..+.+--.++.|+..+|+.+
T Consensus 21 l~~~~~~D~e~lL~ALrvLRP~~~e~~~~~~~l~i~r~~w~dA~rlLr~l~~~~~~~p~~kALlA~CL~~~~D~~ 95 (160)
T PF09613_consen 21 LRLGDPDDAEALLDALRVLRPEFPELDLFDGWLHIVRGDWDDALRLLRELEERAPGFPYAKALLALCLYALGDPS 95 (160)
T ss_pred HccCChHHHHHHHHHHHHhCCCchHHHHHHHHHHHHhCCHHHHHHHHHHHhccCCCChHHHHHHHHHHHHcCChH
Confidence 355677888888888888899999999999999999999999999999988888888888889999998888754
|
|
| >PF14853 Fis1_TPR_C: Fis1 C-terminal tetratricopeptide repeat; PDB: 1IYG_A 1PC2_A 1NZN_A 3UUX_C 1Y8M_A 2PQR_A 2PQN_A 3O48_A | Back alignment and domain information |
|---|
Probab=96.73 E-value=0.0085 Score=36.50 Aligned_cols=43 Identities=16% Similarity=0.177 Sum_probs=35.0
Q ss_pred HHHHHHHHHHHHcCChHHHHHHHHHHhhcCCCChHHHHHHHHH
Q 012143 167 VVWNTLGLILLKSGRLQSSISVLSSLLAVDPNNCDCIGNLGIA 209 (470)
Q Consensus 167 ~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~la~~ 209 (470)
+.++.+|..+.+.|+|++|..+.+.+++.+|++..+......+
T Consensus 2 d~lY~lAig~ykl~~Y~~A~~~~~~lL~~eP~N~Qa~~L~~~i 44 (53)
T PF14853_consen 2 DCLYYLAIGHYKLGEYEKARRYCDALLEIEPDNRQAQSLKELI 44 (53)
T ss_dssp HHHHHHHHHHHHTT-HHHHHHHHHHHHHHTTS-HHHHHHHHHH
T ss_pred hhHHHHHHHHHHhhhHHHHHHHHHHHHhhCCCcHHHHHHHHHH
Confidence 4678899999999999999999999999999998876555443
|
|
| >KOG2041 consensus WD40 repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=96.68 E-value=0.64 Score=44.58 Aligned_cols=195 Identities=13% Similarity=0.048 Sum_probs=119.8
Q ss_pred hhhHHHHHHHHHHhCCCChhHHHHHHHHHHHhCChhHHHHHHHHHHHHHhhhhcccchhhhHHHHHHhh---hccccccc
Q 012143 57 VSSLKTGLVHVARKMPKNAHAHFLLGLMYQRLGQPLKAVSSYEKAEEILLRCEADIARPELLSLVQIHH---AQCLLPES 133 (470)
Q Consensus 57 ~~~A~~~~~~~l~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~ 133 (470)
+++|++..+ .+| ++..|..++......-.++-|...|-+.-... . ..-...+..++. ..+.+
T Consensus 679 ledA~qfiE----dnP-HprLWrllAe~Al~Kl~l~tAE~AFVrc~dY~-G------ik~vkrl~~i~s~~~q~aei--- 743 (1189)
T KOG2041|consen 679 LEDAIQFIE----DNP-HPRLWRLLAEYALFKLALDTAEHAFVRCGDYA-G------IKLVKRLRTIHSKEQQRAEI--- 743 (1189)
T ss_pred hHHHHHHHh----cCC-chHHHHHHHHHHHHHHhhhhHhhhhhhhcccc-c------hhHHHHhhhhhhHHHHhHhH---
Confidence 444544443 344 58899999999888888888888877653310 0 000000000000 00000
Q ss_pred cCCCccccccCcccHHHHHHHHHHhhhcCccchHHHHHHHHHHHHcCChHHHHHHHHHHhhcCC--CChHHHHHHHHHHH
Q 012143 134 SGDNSLDKELEPEELEEILSKLKESMQSDTRQAVVWNTLGLILLKSGRLQSSISVLSSLLAVDP--NNCDCIGNLGIAYF 211 (470)
Q Consensus 134 ~~~~~~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~--~~~~~~~~la~~~~ 211 (470)
----|+|++|.+.|-.+-+.+ .-..++...|+|-.-.+.++..-.-+. ....++..+|..+.
T Consensus 744 --------~~~~g~feeaek~yld~drrD--------LAielr~klgDwfrV~qL~r~g~~d~dD~~~e~A~r~ig~~fa 807 (1189)
T KOG2041|consen 744 --------SAFYGEFEEAEKLYLDADRRD--------LAIELRKKLGDWFRVYQLIRNGGSDDDDEGKEDAFRNIGETFA 807 (1189)
T ss_pred --------hhhhcchhHhhhhhhccchhh--------hhHHHHHhhhhHHHHHHHHHccCCCcchHHHHHHHHHHHHHHH
Confidence 011267889988886553322 123456677888777777765322211 22468999999999
Q ss_pred HcCCHHHHHHHHHHHHhhCCCChHHHHHHHHHHHhhhcccccccccchhhhhHHHhcCCHHHHHHHHHHHHhcCCCCHHH
Q 012143 212 QSGDMEQSAKCFQDLILKDQNHPAALINYAALLLCKYGSVLAGAGANTGEGACLDQASAVNVAKECLLAALKADPKAAHI 291 (470)
Q Consensus 212 ~~g~~~~A~~~~~~~l~~~p~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~ 291 (470)
.+..|++|.++|.+.-.. .++..++. ...++++ ++.....-|++...
T Consensus 808 ~~~~We~A~~yY~~~~~~--------e~~~ecly---------------------~le~f~~----LE~la~~Lpe~s~l 854 (1189)
T KOG2041|consen 808 EMMEWEEAAKYYSYCGDT--------ENQIECLY---------------------RLELFGE----LEVLARTLPEDSEL 854 (1189)
T ss_pred HHHHHHHHHHHHHhccch--------HhHHHHHH---------------------HHHhhhh----HHHHHHhcCcccch
Confidence 999999999999886432 12233333 3444444 33344456888889
Q ss_pred HHHHHHHHHHcCChhHHHHHHHHH
Q 012143 292 WANLANAYYLTGDHRSSGKCLEKA 315 (470)
Q Consensus 292 ~~~la~~~~~~g~~~~A~~~~~~a 315 (470)
+-.+|..+...|.-++|.+.|-+.
T Consensus 855 lp~~a~mf~svGMC~qAV~a~Lr~ 878 (1189)
T KOG2041|consen 855 LPVMADMFTSVGMCDQAVEAYLRR 878 (1189)
T ss_pred HHHHHHHHHhhchHHHHHHHHHhc
Confidence 999999999999999999988653
|
|
| >KOG2396 consensus HAT (Half-A-TPR) repeat-containing protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=96.67 E-value=0.52 Score=43.32 Aligned_cols=95 Identities=15% Similarity=0.145 Sum_probs=84.8
Q ss_pred HHHHHHHHHhhhcCccchHHHHHHHHHHHHcCChHHHHHHHHHHhhcCCCChHHHHHHHHHHHHcCC-HHHHHHHHHHHH
Q 012143 149 EEILSKLKESMQSDTRQAVVWNTLGLILLKSGRLQSSISVLSSLLAVDPNNCDCIGNLGIAYFQSGD-MEQSAKCFQDLI 227 (470)
Q Consensus 149 ~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~la~~~~~~g~-~~~A~~~~~~~l 227 (470)
..-...|+.++...+.++..|........+.+.+.+--..|.+++..+|++++.|..-|.-.+.-+. .+.|...|.+++
T Consensus 88 ~rIv~lyr~at~rf~~D~~lW~~yi~f~kk~~~~~~v~ki~~~~l~~Hp~~~dLWI~aA~wefe~n~ni~saRalflrgL 167 (568)
T KOG2396|consen 88 NRIVFLYRRATNRFNGDVKLWLSYIAFCKKKKTYGEVKKIFAAMLAKHPNNPDLWIYAAKWEFEINLNIESARALFLRGL 167 (568)
T ss_pred HHHHHHHHHHHHhcCCCHHHHHHHHHHHHHhcchhHHHHHHHHHHHhCCCCchhHHhhhhhHHhhccchHHHHHHHHHHh
Confidence 5667889999999999999999998888888889999999999999999999999999988877776 999999999999
Q ss_pred hhCCCChHHHHHHHHH
Q 012143 228 LKDQNHPAALINYAAL 243 (470)
Q Consensus 228 ~~~p~~~~~~~~l~~~ 243 (470)
+.+|+++..|...-..
T Consensus 168 R~npdsp~Lw~eyfrm 183 (568)
T KOG2396|consen 168 RFNPDSPKLWKEYFRM 183 (568)
T ss_pred hcCCCChHHHHHHHHH
Confidence 9999999987655444
|
|
| >PF04781 DUF627: Protein of unknown function (DUF627); InterPro: IPR006866 This domain represents the N-terminal region of several plant proteins of unknown function | Back alignment and domain information |
|---|
Probab=96.63 E-value=0.057 Score=38.49 Aligned_cols=46 Identities=20% Similarity=0.210 Sum_probs=35.2
Q ss_pred HHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCChhHHHHHHHHHHhc
Q 012143 273 VAKECLLAALKADPKAAHIWANLANAYYLTGDHRSSGKCLEKAAKL 318 (470)
Q Consensus 273 ~A~~~~~~~~~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~ 318 (470)
.++++|.++..+.|..+..++.+|.-+-....|+++..-.++++.+
T Consensus 62 ~sve~~s~a~~Lsp~~A~~L~~la~~l~s~~~Ykk~v~kak~~Lsv 107 (111)
T PF04781_consen 62 GSVECFSRAVELSPDSAHSLFELASQLGSVKYYKKAVKKAKRGLSV 107 (111)
T ss_pred HhHHHHHHHhccChhHHHHHHHHHHHhhhHHHHHHHHHHHHHHhcc
Confidence 4777888888888888888888887766666777777777777654
|
|
| >PF12968 DUF3856: Domain of Unknown Function (DUF3856); InterPro: IPR024552 This domain of unknown function is found in a small group of tetratricopeptide-like proteins, which includes the uncharacterised protein Q8KAL8 from SWISSPROT | Back alignment and domain information |
|---|
Probab=96.55 E-value=0.026 Score=40.36 Aligned_cols=100 Identities=15% Similarity=0.127 Sum_probs=63.9
Q ss_pred HHHHHHHH--HHHHcCChHHHHHHHHHHhhcCCCC------------hHHHHHHHHHHHHcCCHHHHHHHHHHHHhh---
Q 012143 167 VVWNTLGL--ILLKSGRLQSSISVLSSLLAVDPNN------------CDCIGNLGIAYFQSGDMEQSAKCFQDLILK--- 229 (470)
Q Consensus 167 ~~~~~l~~--~~~~~~~~~~A~~~~~~a~~~~~~~------------~~~~~~la~~~~~~g~~~~A~~~~~~~l~~--- 229 (470)
.+|..|+. -...-|-|++|...++++.+....- .-++..|+..+..+|+|++++..-.+++..
T Consensus 8 ~aY~aLs~ae~ql~~g~~~eAa~s~r~AM~~srtiP~eEaFDh~GFDA~chA~Ls~A~~~Lgry~e~L~sA~~aL~YFNR 87 (144)
T PF12968_consen 8 MAYMALSDAERQLQDGAYEEAAASCRKAMEVSRTIPAEEAFDHDGFDAFCHAGLSGALAGLGRYDECLQSADRALRYFNR 87 (144)
T ss_dssp HHHHHHHHHHHHHHHT-HHHHHHHHHHHHHHHTTS-TTS---HHHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHhccCChHhhcccccHHHHHHHHHHHHHHhhccHHHHHHHHHHHHHHHhh
Confidence 34444443 3456689999999999998864332 347788999999999999999888888743
Q ss_pred ----CCCChHHHHHHHHHHHhhhcccccccccchhhhhHHHhcCCHHHHHHHHHHHHh
Q 012143 230 ----DQNHPAALINYAALLLCKYGSVLAGAGANTGEGACLDQASAVNVAKECLLAALK 283 (470)
Q Consensus 230 ----~p~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~ 283 (470)
+.+....|. +.++. .+..+...|+.++|+..|+.+-+
T Consensus 88 RGEL~qdeGklWI--aaVfs---------------ra~Al~~~Gr~~eA~~~fr~agE 128 (144)
T PF12968_consen 88 RGELHQDEGKLWI--AAVFS---------------RAVALEGLGRKEEALKEFRMAGE 128 (144)
T ss_dssp H--TTSTHHHHHH--HHHHH---------------HHHHHHHTT-HHHHHHHHHHHHH
T ss_pred ccccccccchhHH--HHHHH---------------HHHHHHhcCChHHHHHHHHHHHH
Confidence 333333332 22221 34555577888888887777654
|
The structure of Q8KAL8 is known and belongs to the SCOP all alpha class, TPR-like superfamily, CT2138-like family.; PDB: 2HR2_D. |
| >PF14561 TPR_20: Tetratricopeptide repeat; PDB: 3QOU_A 2R5S_A 3QDN_B | Back alignment and domain information |
|---|
Probab=96.53 E-value=0.05 Score=37.83 Aligned_cols=60 Identities=25% Similarity=0.380 Sum_probs=47.0
Q ss_pred HHHHHHHHhhcCCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCC--hHHHHHHHHHH
Q 012143 185 SISVLSSLLAVDPNNCDCIGNLGIAYFQSGDMEQSAKCFQDLILKDQNH--PAALINYAALL 244 (470)
Q Consensus 185 A~~~~~~a~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~--~~~~~~l~~~~ 244 (470)
.+..+++.++.+|++..+.+.+|..+...|++++|++.+-.+++.+++. ..+...+..++
T Consensus 7 ~~~al~~~~a~~P~D~~ar~~lA~~~~~~g~~e~Al~~Ll~~v~~dr~~~~~~ar~~ll~~f 68 (90)
T PF14561_consen 7 DIAALEAALAANPDDLDARYALADALLAAGDYEEALDQLLELVRRDRDYEDDAARKRLLDIF 68 (90)
T ss_dssp HHHHHHHHHHHSTT-HHHHHHHHHHHHHTT-HHHHHHHHHHHHCC-TTCCCCHHHHHHHHHH
T ss_pred cHHHHHHHHHcCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCccccccHHHHHHHHHH
Confidence 4667889999999999999999999999999999999999999988765 44444444333
|
|
| >smart00028 TPR Tetratricopeptide repeats | Back alignment and domain information |
|---|
Probab=96.51 E-value=0.0054 Score=32.86 Aligned_cols=30 Identities=27% Similarity=0.423 Sum_probs=15.5
Q ss_pred HHHHHHHHHHHcCChHHHHHHHHHHhhcCC
Q 012143 168 VWNTLGLILLKSGRLQSSISVLSSLLAVDP 197 (470)
Q Consensus 168 ~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~ 197 (470)
++..+|.++...|++++|+..++++++..|
T Consensus 3 ~~~~~a~~~~~~~~~~~a~~~~~~~~~~~~ 32 (34)
T smart00028 3 ALYNLGNAYLKLGDYDEALEYYEKALELDP 32 (34)
T ss_pred HHHHHHHHHHHHhhHHHHHHHHHHHHccCC
Confidence 344455555555555555555555555444
|
Repeats present in 4 or more copies in proteins. Contain a minimum of 34 amino acids each and self-associate via a "knobs and holes" mechanism. |
| >PF09613 HrpB1_HrpK: Bacterial type III secretion protein (HrpB1_HrpK); InterPro: IPR013394 This family of proteins is encoded by genes found within type III secretion operons in a limited range of species including Xanthomonas, Ralstonia and Burkholderia | Back alignment and domain information |
|---|
Probab=96.48 E-value=0.095 Score=40.43 Aligned_cols=77 Identities=17% Similarity=0.120 Sum_probs=39.2
Q ss_pred HHHHHHHHHHHcCChHHHHHHHHHHhhcCCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCChHHHHHHHHHH
Q 012143 168 VWNTLGLILLKSGRLQSSISVLSSLLAVDPNNCDCIGNLGIAYFQSGDMEQSAKCFQDLILKDQNHPAALINYAALL 244 (470)
Q Consensus 168 ~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~l~~~~ 244 (470)
.+..+..+-...++.+++...+.-.--+.|..+..-..-|+++...|+|.+|+..++.+....|..+.+.-.++.++
T Consensus 12 gLie~~~~al~~~~~~D~e~lL~ALrvLRP~~~e~~~~~~~l~i~r~~w~dA~rlLr~l~~~~~~~p~~kALlA~CL 88 (160)
T PF09613_consen 12 GLIEVLSVALRLGDPDDAEALLDALRVLRPEFPELDLFDGWLHIVRGDWDDALRLLRELEERAPGFPYAKALLALCL 88 (160)
T ss_pred HHHHHHHHHHccCChHHHHHHHHHHHHhCCCchHHHHHHHHHHHHhCCHHHHHHHHHHHhccCCCChHHHHHHHHHH
Confidence 34444444445555555555555555555555555555555555555555555555555544444444433334333
|
|
| >KOG1464 consensus COP9 signalosome, subunit CSN2 [Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=96.47 E-value=0.17 Score=42.36 Aligned_cols=197 Identities=9% Similarity=0.022 Sum_probs=115.5
Q ss_pred hcCCHHHHHHHHHHHHhcCCCC----HHHHHHHHHHHHHcCChhHHHHHHHHHHhcCCCccc-HHHHHHHHHHHHhhhcc
Q 012143 267 QASAVNVAKECLLAALKADPKA----AHIWANLANAYYLTGDHRSSGKCLEKAAKLEPNCMS-TRYAVAVSRIKDAERSQ 341 (470)
Q Consensus 267 ~~~~~~~A~~~~~~~~~~~p~~----~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~p~~~~-~~~~l~~~~~~~~~~~~ 341 (470)
+..++++|+..|++++++.+.. ..++..+..+++++|++++-...|++.+..-..-.. .+.......+.+.....
T Consensus 39 ~e~~p~~Al~sF~kVlelEgEKgeWGFKALKQmiKI~f~l~~~~eMm~~Y~qlLTYIkSAVTrNySEKsIN~IlDyiStS 118 (440)
T KOG1464|consen 39 KEDEPKEALSSFQKVLELEGEKGEWGFKALKQMIKINFRLGNYKEMMERYKQLLTYIKSAVTRNYSEKSINSILDYISTS 118 (440)
T ss_pred cccCHHHHHHHHHHHHhcccccchhHHHHHHHHHHHHhccccHHHHHHHHHHHHHHHHHHHhccccHHHHHHHHHHHhhh
Confidence 3568999999999999998874 346777889999999999999999887743211000 00001111111111111
Q ss_pred CchHHhhhhHHHHHHHhhcCCCCCCCcHHHHH----HHHHHHhccccHHHHHHHHHHHhc---chhh-----------hh
Q 012143 342 EPTEQLSWAGNEMASILREGDPVQIEPPIAWA----GFAAVQKTHHEVAAAFETEENELS---KMEE-----------CA 403 (470)
Q Consensus 342 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~l~~~~~~~~~~~~A~~~~~~~~~---~~~~-----------~~ 403 (470)
....-+...++.....+..+.. ...|+ .+|.+++..+++.+-.+.+++... ..+. +.
T Consensus 119 ~~m~LLQ~FYeTTL~ALkdAKN-----eRLWFKTNtKLgkl~fd~~e~~kl~KIlkqLh~SCq~edGedD~kKGtQLLEi 193 (440)
T KOG1464|consen 119 KNMDLLQEFYETTLDALKDAKN-----ERLWFKTNTKLGKLYFDRGEYTKLQKILKQLHQSCQTEDGEDDQKKGTQLLEI 193 (440)
T ss_pred hhhHHHHHHHHHHHHHHHhhhc-----ceeeeeccchHhhhheeHHHHHHHHHHHHHHHHHhccccCchhhhccchhhhh
Confidence 1122222222222333333221 12343 688888888888776666554221 1100 12
Q ss_pred HhhHHHHHHHhccHHHHHHHHHHHHhcCCCc--HHH----HHHHHHHHHHcCChHHHHHHHHHHHHhhccC
Q 012143 404 GAGESAFLDQASAVNVAKECLLAALKADPKA--AHI----WANLANAYYLTGDHRSSGKCLEKVLMVYCSS 468 (470)
Q Consensus 404 ~~~l~~~~~~~~~~~~A~~~~~~al~~~p~~--~~~----~~~la~~~~~~g~~~~A~~~~~~al~~~~~~ 468 (470)
+---...|....+-.+-...|++++.+.+.- |.+ .-.=|..+.+.|++++|-..|=.|++-|..+
T Consensus 194 YAlEIQmYT~qKnNKkLK~lYeqalhiKSAIPHPlImGvIRECGGKMHlreg~fe~AhTDFFEAFKNYDEs 264 (440)
T KOG1464|consen 194 YALEIQMYTEQKNNKKLKALYEQALHIKSAIPHPLIMGVIRECGGKMHLREGEFEKAHTDFFEAFKNYDES 264 (440)
T ss_pred HhhHhhhhhhhcccHHHHHHHHHHHHhhccCCchHHHhHHHHcCCccccccchHHHHHhHHHHHHhccccc
Confidence 2223345667777777788899998875433 222 2233556788899999999999998877654
|
|
| >COG2909 MalT ATP-dependent transcriptional regulator [Transcription] | Back alignment and domain information |
|---|
Probab=96.47 E-value=1.1 Score=44.53 Aligned_cols=214 Identities=16% Similarity=0.123 Sum_probs=135.1
Q ss_pred CChhHHHHHHHHHHHhCChhHHHHHHHHHHHHHhhhhcccchhhhHHHHHHhhhccccccccCCCccccccCcccHHHHH
Q 012143 73 KNAHAHFLLGLMYQRLGQPLKAVSSYEKAEEILLRCEADIARPELLSLVQIHHAQCLLPESSGDNSLDKELEPEELEEIL 152 (470)
Q Consensus 73 ~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~ 152 (470)
.+|..-...++......++.+|.....++....+.+.... .........+..+.. .+..|+++.|+
T Consensus 413 ~~P~Lvll~aW~~~s~~r~~ea~~li~~l~~~l~~~~~~~-~~~l~ae~~aL~a~v-------------al~~~~~e~a~ 478 (894)
T COG2909 413 STPRLVLLQAWLLASQHRLAEAETLIARLEHFLKAPMHSR-QGDLLAEFQALRAQV-------------ALNRGDPEEAE 478 (894)
T ss_pred hCchHHHHHHHHHHHccChHHHHHHHHHHHHHhCcCcccc-hhhHHHHHHHHHHHH-------------HHhcCCHHHHH
Confidence 3456667788888999999999999999988766542221 111211112222221 34568889999
Q ss_pred HHHHHhhhcCccc-----hHHHHHHHHHHHHcCChHHHHHHHHHHhhcCCC------ChHHHHHHHHHHHHcCCHH--HH
Q 012143 153 SKLKESMQSDTRQ-----AVVWNTLGLILLKSGRLQSSISVLSSLLAVDPN------NCDCIGNLGIAYFQSGDME--QS 219 (470)
Q Consensus 153 ~~~~~~~~~~p~~-----~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~------~~~~~~~la~~~~~~g~~~--~A 219 (470)
+..+.++..-|.+ ..++..+|.+..-.|++++|..+...+.+.... ...+....+.++..+|+.. +.
T Consensus 479 ~lar~al~~L~~~~~~~r~~~~sv~~~a~~~~G~~~~Al~~~~~a~~~a~~~~~~~l~~~~~~~~s~il~~qGq~~~a~~ 558 (894)
T COG2909 479 DLARLALVQLPEAAYRSRIVALSVLGEAAHIRGELTQALALMQQAEQMARQHDVYHLALWSLLQQSEILEAQGQVARAEQ 558 (894)
T ss_pred HHHHHHHHhcccccchhhhhhhhhhhHHHHHhchHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHhhHHHHHHH
Confidence 9999999887765 346778899999999999999999998876322 1334556677888888433 33
Q ss_pred HHHHHHHH----hhCCCChHHHHHHHHHHHhhhcccccccccchhhhhHHHhcCCHHHHHHHHHHHHh----cCCCCHH-
Q 012143 220 AKCFQDLI----LKDQNHPAALINYAALLLCKYGSVLAGAGANTGEGACLDQASAVNVAKECLLAALK----ADPKAAH- 290 (470)
Q Consensus 220 ~~~~~~~l----~~~p~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~----~~p~~~~- 290 (470)
...|...- ...|.+.......+.++... . +++.+..-....++ ..|....
T Consensus 559 ~~~~~~~~~q~l~q~~~~~f~~~~r~~ll~~~--------------------~-r~~~~~~ear~~~~~~~~~~~~~~~~ 617 (894)
T COG2909 559 EKAFNLIREQHLEQKPRHEFLVRIRAQLLRAW--------------------L-RLDLAEAEARLGIEVGSVYTPQPLLS 617 (894)
T ss_pred HHHHHHHHHHHhhhcccchhHHHHHHHHHHHH--------------------H-HHhhhhHHhhhcchhhhhcccchhHH
Confidence 33333322 22344433444444444321 1 14444444444333 3333222
Q ss_pred --HHHHHHHHHHHcCChhHHHHHHHHHHhcCCC
Q 012143 291 --IWANLANAYYLTGDHRSSGKCLEKAAKLEPN 321 (470)
Q Consensus 291 --~~~~la~~~~~~g~~~~A~~~~~~a~~~~p~ 321 (470)
....++.+.+..|+.++|...+.++......
T Consensus 618 ~~~~~~LA~l~~~~Gdl~~A~~~l~~~~~l~~~ 650 (894)
T COG2909 618 RLALSMLAELEFLRGDLDKALAQLDELERLLLN 650 (894)
T ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHHHhcC
Confidence 2247899999999999999999988765443
|
|
| >smart00028 TPR Tetratricopeptide repeats | Back alignment and domain information |
|---|
Probab=96.44 E-value=0.0064 Score=32.55 Aligned_cols=32 Identities=28% Similarity=0.559 Sum_probs=29.6
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCC
Q 012143 201 DCIGNLGIAYFQSGDMEQSAKCFQDLILKDQN 232 (470)
Q Consensus 201 ~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~ 232 (470)
.++..+|.++...|++++|+..++++++..|.
T Consensus 2 ~~~~~~a~~~~~~~~~~~a~~~~~~~~~~~~~ 33 (34)
T smart00028 2 EALYNLGNAYLKLGDYDEALEYYEKALELDPN 33 (34)
T ss_pred hHHHHHHHHHHHHhhHHHHHHHHHHHHccCCC
Confidence 56889999999999999999999999998875
|
Repeats present in 4 or more copies in proteins. Contain a minimum of 34 amino acids each and self-associate via a "knobs and holes" mechanism. |
| >PRK10941 hypothetical protein; Provisional | Back alignment and domain information |
|---|
Probab=96.44 E-value=0.017 Score=49.46 Aligned_cols=65 Identities=15% Similarity=0.033 Sum_probs=60.7
Q ss_pred hHHHhcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCChhHHHHHHHHHHhcCCCcccHHH
Q 012143 263 ACLDQASAVNVAKECLLAALKADPKAAHIWANLANAYYLTGDHRSSGKCLEKAAKLEPNCMSTRY 327 (470)
Q Consensus 263 ~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~p~~~~~~~ 327 (470)
.++.+.++++.|+.+.+..+.+.|+++.-+.-.|.+|.++|.+..|...++..++..|+++.+..
T Consensus 189 ~~~~~~~~~~~AL~~~e~ll~l~P~dp~e~RDRGll~~qL~c~~~A~~DL~~fl~~~P~dp~a~~ 253 (269)
T PRK10941 189 AALMEEKQMELALRASEALLQFDPEDPYEIRDRGLIYAQLDCEHVALSDLSYFVEQCPEDPISEM 253 (269)
T ss_pred HHHHHcCcHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCcHHHHHHHHHHHHhCCCchhHHH
Confidence 45668999999999999999999999999999999999999999999999999999999887654
|
|
| >KOG3807 consensus Predicted membrane protein ST7 (tumor suppressor in humans) [General function prediction only] | Back alignment and domain information |
|---|
Probab=96.41 E-value=0.56 Score=40.63 Aligned_cols=204 Identities=15% Similarity=0.077 Sum_probs=107.0
Q ss_pred hhhhcChhhHHHHHHHHHHhCCCChhHHHHHHHHHHHhCChhHHHHHHHHHHHHHhhhhcccchhhhHHHHHHhhhcccc
Q 012143 51 SSREEKVSSLKTGLVHVARKMPKNAHAHFLLGLMYQRLGQPLKAVSSYEKAEEILLRCEADIARPELLSLVQIHHAQCLL 130 (470)
Q Consensus 51 ~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 130 (470)
..+..+...-++.-..+++++|..+.++..++.--. .-..+|...|+++++.... .+.....
T Consensus 194 AWRERnp~~RI~~A~~ALeIN~eCA~AyvLLAEEEa--~Ti~~AE~l~k~ALka~e~----------------~yr~sqq 255 (556)
T KOG3807|consen 194 AWRERNPPARIKAAYQALEINNECATAYVLLAEEEA--TTIVDAERLFKQALKAGET----------------IYRQSQQ 255 (556)
T ss_pred HHHhcCcHHHHHHHHHHHhcCchhhhHHHhhhhhhh--hhHHHHHHHHHHHHHHHHH----------------HHhhHHH
Confidence 344555566667777889999999999998887543 3477899999999886311 0110000
Q ss_pred ccccCCCccccccCcccHHHHHHHHHHhhhcCccchH--HHHHHHHHHHHcCChHHHHHHHHHHhhcCCCC--hHHHHHH
Q 012143 131 PESSGDNSLDKELEPEELEEILSKLKESMQSDTRQAV--VWNTLGLILLKSGRLQSSISVLSSLLAVDPNN--CDCIGNL 206 (470)
Q Consensus 131 ~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~p~~~~--~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~--~~~~~~l 206 (470)
....|. ..+ ...+.+ .+.. +-..++.|..++|+..+|++.++...+-.|-. ..++-++
T Consensus 256 ~qh~~~-----------~~d------a~~rRD-tnvl~YIKRRLAMCARklGrlrEA~K~~RDL~ke~pl~t~lniheNL 317 (556)
T KOG3807|consen 256 CQHQSP-----------QHE------AQLRRD-TNVLVYIKRRLAMCARKLGRLREAVKIMRDLMKEFPLLTMLNIHENL 317 (556)
T ss_pred Hhhhcc-----------chh------hhhhcc-cchhhHHHHHHHHHHHHhhhHHHHHHHHHHHhhhccHHHHHHHHHHH
Confidence 000000 011 111112 2233 33468999999999999999999988776632 2344455
Q ss_pred HHHHHHcCCHHHHHHHHHHHHhhC-CCChHHHHHHHHHHHhhhcccccccccchhhhhHHHhcCCHHHHHHHHHHHHhcC
Q 012143 207 GIAYFQSGDMEQSAKCFQDLILKD-QNHPAALINYAALLLCKYGSVLAGAGANTGEGACLDQASAVNVAKECLLAALKAD 285 (470)
Q Consensus 207 a~~~~~~g~~~~A~~~~~~~l~~~-p~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~ 285 (470)
-..+....-|.+....+-+.-++. |......+.-+ ++..+.-.....++.....|..-. -..|++...++++.+
T Consensus 318 iEalLE~QAYADvqavLakYDdislPkSA~icYTaA-LLK~RAVa~kFspd~asrRGLS~A----E~~AvEAihRAvEFN 392 (556)
T KOG3807|consen 318 LEALLELQAYADVQAVLAKYDDISLPKSAAICYTAA-LLKTRAVSEKFSPETASRRGLSTA----EINAVEAIHRAVEFN 392 (556)
T ss_pred HHHHHHHHHHHHHHHHHHhhccccCcchHHHHHHHH-HHHHHHHHhhcCchhhhhccccHH----HHHHHHHHHHHhhcC
Confidence 555555555554444444332222 33332222211 111100000001111111111111 134777788888888
Q ss_pred CCCHHHHHHH
Q 012143 286 PKAAHIWANL 295 (470)
Q Consensus 286 p~~~~~~~~l 295 (470)
|.-+..+..+
T Consensus 393 PHVPkYLLE~ 402 (556)
T KOG3807|consen 393 PHVPKYLLEM 402 (556)
T ss_pred CCCcHHHHHH
Confidence 8877666554
|
|
| >PF09986 DUF2225: Uncharacterized protein conserved in bacteria (DUF2225); InterPro: IPR018708 This conserved bacterial family has no known function | Back alignment and domain information |
|---|
Probab=96.40 E-value=0.035 Score=45.94 Aligned_cols=86 Identities=10% Similarity=0.046 Sum_probs=60.7
Q ss_pred cccHHHHHHHHHHHhc------c---hhhhhHhhHHHHHHHhcc-------HHHHHHHHHHHHhcCC------CcHHHHH
Q 012143 382 HHEVAAAFETEENELS------K---MEECAGAGESAFLDQASA-------VNVAKECLLAALKADP------KAAHIWA 439 (470)
Q Consensus 382 ~~~~~~A~~~~~~~~~------~---~~~~~~~~l~~~~~~~~~-------~~~A~~~~~~al~~~p------~~~~~~~ 439 (470)
...+++|++.|..++- . .....+..+|++|...|+ +..|+..|+++++... +...+.+
T Consensus 90 ~Rt~~~ai~~YkLAll~~~~~~~~~s~~A~l~LrlAWlyR~~~~~~~E~~fl~~Al~~y~~a~~~e~~~~~~~~~~~l~Y 169 (214)
T PF09986_consen 90 ERTLEEAIESYKLALLCAQIKKEKPSKKAGLCLRLAWLYRDLGDEENEKRFLRKALEFYEEAYENEDFPIEGMDEATLLY 169 (214)
T ss_pred CCCHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHhhccCCHHHHHHHHHHHHHHHHHHHHhCcCCCCCchHHHHHH
Confidence 4456666666665332 1 112446788888888888 5666666666665432 2257889
Q ss_pred HHHHHHHHcCChHHHHHHHHHHHHhhcc
Q 012143 440 NLANAYYLTGDHRSSGKCLEKVLMVYCS 467 (470)
Q Consensus 440 ~la~~~~~~g~~~~A~~~~~~al~~~~~ 467 (470)
.+|.+..+.|++++|..+|.+++.....
T Consensus 170 LigeL~rrlg~~~eA~~~fs~vi~~~~~ 197 (214)
T PF09986_consen 170 LIGELNRRLGNYDEAKRWFSRVIGSKKA 197 (214)
T ss_pred HHHHHHHHhCCHHHHHHHHHHHHcCCCC
Confidence 9999999999999999999999876543
|
|
| >COG3914 Spy Predicted O-linked N-acetylglucosamine transferase, SPINDLY family [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=96.37 E-value=0.18 Score=47.10 Aligned_cols=142 Identities=15% Similarity=0.096 Sum_probs=111.1
Q ss_pred HHHHHHHHHhhhcCccchHHHHH--HHHHHHHcCChHHHHHHHHHHhhcCCCChHHHHHHHHHHHHcCCHHHHHHHHHH-
Q 012143 149 EEILSKLKESMQSDTRQAVVWNT--LGLILLKSGRLQSSISVLSSLLAVDPNNCDCIGNLGIAYFQSGDMEQSAKCFQD- 225 (470)
Q Consensus 149 ~~A~~~~~~~~~~~p~~~~~~~~--l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~- 225 (470)
.-++..+...+..+|.++..+.. +...+...+....+...+..++..+|++..+..+++......|....+...+..
T Consensus 48 ~~~~~a~~~~~~~~~~~~~llla~~lsi~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~L~~ale~~~~~~~~~~~~~~~ 127 (620)
T COG3914 48 ALAIYALLLGIAINDVNPELLLAAFLSILLAPLADSTLAFLAKRIPLSVNPENCPAVQNLAAALELDGLQFLALADISEI 127 (620)
T ss_pred hHHHHHHHccCccCCCCHHHHHHHHHHhhccccccchhHHHHHhhhHhcCcccchHHHHHHHHHHHhhhHHHHHHHHHHH
Confidence 33666666777788888876544 477777888988999999999999999999999999999888887777776666
Q ss_pred HHhhCCCChHHHHHHHHHHHhhhcccccccccchhhhhHHHhcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCh
Q 012143 226 LILKDQNHPAALINYAALLLCKYGSVLAGAGANTGEGACLDQASAVNVAKECLLAALKADPKAAHIWANLANAYYLTGDH 305 (470)
Q Consensus 226 ~l~~~p~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~la~~~~~~g~~ 305 (470)
+....|.+......+..++. ++......|+..++.....++....|.++.+...+.........+
T Consensus 128 a~~~~~~~~~~~~~~~~~~~---------------~~~~~~~l~~~~~~~~~l~~~~d~~p~~~~~~~~~~~~r~~~cs~ 192 (620)
T COG3914 128 AEWLSPDNAEFLGHLIRFYQ---------------LGRYLKLLGRTAEAELALERAVDLLPKYPRVLGALMTARQEQCSW 192 (620)
T ss_pred HHhcCcchHHHHhhHHHHHH---------------HHHHHHHhccHHHHHHHHHHHHHhhhhhhhhHhHHHHHHHHhccc
Confidence 78888988887766655554 466677899999999999999999999877766666554444433
|
|
| >KOG1258 consensus mRNA processing protein [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=96.32 E-value=0.98 Score=42.61 Aligned_cols=119 Identities=10% Similarity=0.077 Sum_probs=83.8
Q ss_pred ChhhHHHHHHHHHHhCCCChhHHHHHHHHHHHhCChhHHHHHHHHHHHHHhhhhcccchhhhHHHHHHhhhccccccccC
Q 012143 56 KVSSLKTGLVHVARKMPKNAHAHFLLGLMYQRLGQPLKAVSSYEKAEEILLRCEADIARPELLSLVQIHHAQCLLPESSG 135 (470)
Q Consensus 56 ~~~~A~~~~~~~l~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 135 (470)
....+...+...+...|-....|...|..-.+.|..+.+...|++++...|-. ...|...+....
T Consensus 60 ~~~~~r~~y~~fL~kyPl~~gyW~kfA~~E~klg~~~~s~~Vfergv~aip~S------------vdlW~~Y~~f~~--- 124 (577)
T KOG1258|consen 60 DVDALREVYDIFLSKYPLCYGYWKKFADYEYKLGNAENSVKVFERGVQAIPLS------------VDLWLSYLAFLK--- 124 (577)
T ss_pred HHHHHHHHHHHHHhhCccHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHhhhhH------------HHHHHHHHHHHh---
Confidence 34778888888999999999999999999999999999999999999875532 122222221111
Q ss_pred CCccccccCcccHHHHHHHHHHhhhcCcc---chHHHHHHHHHHHHcCChHHHHHHHHHHhhcC
Q 012143 136 DNSLDKELEPEELEEILSKLKESMQSDTR---QAVVWNTLGLILLKSGRLQSSISVLSSLLAVD 196 (470)
Q Consensus 136 ~~~~~~~~~~~~~~~A~~~~~~~~~~~p~---~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~ 196 (470)
-..|+.+.-...|+++...... ....|-..-.....++++..-...|++.++..
T Consensus 125 -------n~~~d~~~lr~~fe~A~~~vG~dF~S~~lWdkyie~en~qks~k~v~~iyeRileiP 181 (577)
T KOG1258|consen 125 -------NNNGDPETLRDLFERAKSYVGLDFLSDPLWDKYIEFENGQKSWKRVANIYERILEIP 181 (577)
T ss_pred -------ccCCCHHHHHHHHHHHHHhcccchhccHHHHHHHHHHhccccHHHHHHHHHHHHhhh
Confidence 1345556677777777664332 23455555556677788888888888887753
|
|
| >KOG3783 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=96.31 E-value=0.93 Score=42.19 Aligned_cols=243 Identities=9% Similarity=0.007 Sum_probs=131.8
Q ss_pred HHHHHHHHHhhcCCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCChH----HHHHHHHHHHhhhcccccccccch
Q 012143 184 SSISVLSSLLAVDPNNCDCIGNLGIAYFQSGDMEQSAKCFQDLILKDQNHPA----ALINYAALLLCKYGSVLAGAGANT 259 (470)
Q Consensus 184 ~A~~~~~~a~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~----~~~~l~~~~~~~~~~~~~~~~~~~ 259 (470)
...+.+.......|+++......+..+...|+.+.|+..++..+. +.... .++.++.
T Consensus 251 ~~~~~Ll~~~~~~p~ga~wll~~ar~l~~~g~~eaa~~~~~~~v~--~~~kQ~~~l~~fE~aw----------------- 311 (546)
T KOG3783|consen 251 ECEKALKKYRKRYPKGALWLLMEARILSIKGNSEAAIDMESLSIP--IRMKQVKSLMVFERAW----------------- 311 (546)
T ss_pred HHHHHhHHHHHhCCCCccHHHHHHHHHHHcccHHHHHHHHHhccc--HHHHHHHHHHHHHHHH-----------------
Confidence 344444455556888888888888888888887778888887765 21111 1122222
Q ss_pred hhhhHHHhcCCHHHHHHHHHHHHhcCCCCHHHHHHHH-HHHHH--------cCChhHHHHHHHHH---HhcCCCcccHHH
Q 012143 260 GEGACLDQASAVNVAKECLLAALKADPKAAHIWANLA-NAYYL--------TGDHRSSGKCLEKA---AKLEPNCMSTRY 327 (470)
Q Consensus 260 ~~~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~la-~~~~~--------~g~~~~A~~~~~~a---~~~~p~~~~~~~ 327 (470)
++.-..+|.+|...+........-..-.|..++ -|+.. .|+-+.|..+++.. +...|.+...-.
T Consensus 312 ----~~v~~~~~~~aad~~~~L~desdWS~a~Y~Yfa~cc~l~~~~~~q~~~~ne~~a~~~~k~~~~l~~~a~K~~P~E~ 387 (546)
T KOG3783|consen 312 ----LSVGQHQYSRAADSFDLLRDESDWSHAFYTYFAGCCLLQNWEVNQGAGGNEEKAQLYFKVGEELLANAGKNLPLEK 387 (546)
T ss_pred ----HHHHHHHHHHHhhHHHHHHhhhhhhHHHHHHHHHHHHhccHHHHHhcccchhHHHHHHHHHHHHHHhccccCchhH
Confidence 333566788888888877776555444454444 23221 23444444444433 223333322111
Q ss_pred HHHHHHHHHhhhccCchHHhhhhHHHHHHHhhcCCCCC---CCcHHHHHHHHHHHhccccHHHHHHHHHH-Hhcchhh--
Q 012143 328 AVAVSRIKDAERSQEPTEQLSWAGNEMASILREGDPVQ---IEPPIAWAGFAAVQKTHHEVAAAFETEEN-ELSKMEE-- 401 (470)
Q Consensus 328 ~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~l~~~~~~~~~~~~A~~~~~~-~~~~~~~-- 401 (470)
... + ..+.+....+...... |-...+|+.-|.--....+..+....+.. ..+..+.
T Consensus 388 f~~----R--------------Kverf~~~~~~~~~~~la~P~~El~Y~Wngf~~~s~~~l~k~~~~~~~~~~~d~Dd~~ 449 (546)
T KOG3783|consen 388 FIV----R--------------KVERFVKRGPLNASILLASPYYELAYFWNGFSRMSKNELEKMRAELENPKIDDSDDEG 449 (546)
T ss_pred HHH----H--------------HHHHHhccccccccccccchHHHHHHHHhhcccCChhhHHHHHHHHhccCCCCchHHH
Confidence 000 0 0000111110000000 11111222222222222233333333332 2322222
Q ss_pred hhHhhHHHHHHHhccHHHHHHHHHHHHhcC---CC----cHHHHHHHHHHHHHcCC-hHHHHHHHHHHHHhhcc
Q 012143 402 CAGAGESAFLDQASAVNVAKECLLAALKAD---PK----AAHIWANLANAYYLTGD-HRSSGKCLEKVLMVYCS 467 (470)
Q Consensus 402 ~~~~~l~~~~~~~~~~~~A~~~~~~al~~~---p~----~~~~~~~la~~~~~~g~-~~~A~~~~~~al~~~~~ 467 (470)
--++-+|.++..+|+...|..+|..+++.. .. -|.++|.+|..+..+|. ..++.+++.+|-+-...
T Consensus 450 lk~lL~g~~lR~Lg~~~~a~~~f~i~~~~e~~~~~d~w~~PfA~YElA~l~~~~~g~~~e~~~~L~kAr~~~~d 523 (546)
T KOG3783|consen 450 LKYLLKGVILRNLGDSEVAPKCFKIQVEKESKRTEDLWAVPFALYELALLYWDLGGGLKEARALLLKAREYASD 523 (546)
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhhccccccccHHHHHHHHHHHhcccChHHHHHHHHHHHhhccc
Confidence 225688899999999999999999888532 11 27899999999999999 99999999999886643
|
|
| >PF04781 DUF627: Protein of unknown function (DUF627); InterPro: IPR006866 This domain represents the N-terminal region of several plant proteins of unknown function | Back alignment and domain information |
|---|
Probab=96.24 E-value=0.015 Score=41.34 Aligned_cols=106 Identities=14% Similarity=0.067 Sum_probs=64.2
Q ss_pred HHHHHHHhCChhHHHHHHHHHHHHHhhhhcccchhhhHHHHHHhhhccccccccCCCccccccCcccHHHHHHHHHHhhh
Q 012143 81 LGLMYQRLGQPLKAVSSYEKAEEILLRCEADIARPELLSLVQIHHAQCLLPESSGDNSLDKELEPEELEEILSKLKESMQ 160 (470)
Q Consensus 81 l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~ 160 (470)
++.-++..|++-+|++..+..+...+++.... ..+...|. -.++.+..
T Consensus 2 ~A~~~~~rGnhiKAL~iied~i~~h~~~~~~~---------~lh~~QG~-----------------------if~~lA~~ 49 (111)
T PF04781_consen 2 KAKDYFARGNHIKALEIIEDLISRHGEDESSW---------LLHRLQGT-----------------------IFYKLAKK 49 (111)
T ss_pred hHHHHHHccCHHHHHHHHHHHHHHccCCCchH---------HHHHHHhH-----------------------HHHHHHHh
Confidence 46778899999999999999998765432210 12222222 22233333
Q ss_pred cCccchHHHHHHHHHHHHcCChHHHHHHHHHHhhcCCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHhh
Q 012143 161 SDTRQAVVWNTLGLILLKSGRLQSSISVLSSLLAVDPNNCDCIGNLGIAYFQSGDMEQSAKCFQDLILK 229 (470)
Q Consensus 161 ~~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~ 229 (470)
.+..+...-+.+ .++++|.++..+.|..+..++.+|.-+.....|+++....++++.+
T Consensus 50 ten~d~k~~yLl-----------~sve~~s~a~~Lsp~~A~~L~~la~~l~s~~~Ykk~v~kak~~Lsv 107 (111)
T PF04781_consen 50 TENPDVKFRYLL-----------GSVECFSRAVELSPDSAHSLFELASQLGSVKYYKKAVKKAKRGLSV 107 (111)
T ss_pred ccCchHHHHHHH-----------HhHHHHHHHhccChhHHHHHHHHHHHhhhHHHHHHHHHHHHHHhcc
Confidence 332223333333 2567777777777777777777777666666677777777777654
|
|
| >COG3914 Spy Predicted O-linked N-acetylglucosamine transferase, SPINDLY family [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=96.22 E-value=1.1 Score=42.23 Aligned_cols=132 Identities=19% Similarity=0.085 Sum_probs=102.4
Q ss_pred CChHHHHHHHHHHhhcCCCChHHHHH--HHHHHHHcCCHHHHHHHHHHHHhhCCCChHHHHHHHHHHHhhhccccccccc
Q 012143 180 GRLQSSISVLSSLLAVDPNNCDCIGN--LGIAYFQSGDMEQSAKCFQDLILKDQNHPAALINYAALLLCKYGSVLAGAGA 257 (470)
Q Consensus 180 ~~~~~A~~~~~~a~~~~~~~~~~~~~--la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~l~~~~~~~~~~~~~~~~~ 257 (470)
|...-++..+...+..+|.++..+.. +...+...+....+...+..++..+|.+..+..+++..+..
T Consensus 45 ~~~~~~~~a~~~~~~~~~~~~~llla~~lsi~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~L~~ale~----------- 113 (620)
T COG3914 45 GLQALAIYALLLGIAINDVNPELLLAAFLSILLAPLADSTLAFLAKRIPLSVNPENCPAVQNLAAALEL----------- 113 (620)
T ss_pred CchhHHHHHHHccCccCCCCHHHHHHHHHHhhccccccchhHHHHHhhhHhcCcccchHHHHHHHHHHH-----------
Confidence 44444777788888888888876444 47777888999999999999999999999999999988872
Q ss_pred chhhhhHHHhcCCHH-HHHHHHHHHHhcCCCCHHHHHHH------HHHHHHcCChhHHHHHHHHHHhcCCCcccHHHHHH
Q 012143 258 NTGEGACLDQASAVN-VAKECLLAALKADPKAAHIWANL------ANAYYLTGDHRSSGKCLEKAAKLEPNCMSTRYAVA 330 (470)
Q Consensus 258 ~~~~~~~~~~~~~~~-~A~~~~~~~~~~~p~~~~~~~~l------a~~~~~~g~~~~A~~~~~~a~~~~p~~~~~~~~l~ 330 (470)
.|... -+..+...+....|++......+ +.....+|+..++.....++....|.++.....+.
T Consensus 114 ----------~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~l~~~~d~~p~~~~~~~~~~ 183 (620)
T COG3914 114 ----------DGLQFLALADISEIAEWLSPDNAEFLGHLIRFYQLGRYLKLLGRTAEAELALERAVDLLPKYPRVLGALM 183 (620)
T ss_pred ----------hhhHHHHHHHHHHHHHhcCcchHHHHhhHHHHHHHHHHHHHhccHHHHHHHHHHHHHhhhhhhhhHhHHH
Confidence 44444 44455555888888877665555 88888899999999999999999999866555444
Q ss_pred HH
Q 012143 331 VS 332 (470)
Q Consensus 331 ~~ 332 (470)
..
T Consensus 184 ~~ 185 (620)
T COG3914 184 TA 185 (620)
T ss_pred HH
Confidence 43
|
|
| >PF09986 DUF2225: Uncharacterized protein conserved in bacteria (DUF2225); InterPro: IPR018708 This conserved bacterial family has no known function | Back alignment and domain information |
|---|
Probab=96.15 E-value=0.099 Score=43.33 Aligned_cols=49 Identities=16% Similarity=0.206 Sum_probs=30.3
Q ss_pred cCChHHHHHHHHHHhhc----C-C--CChHHHHHHHHHHHHcCCHHHHHHHHHHHH
Q 012143 179 SGRLQSSISVLSSLLAV----D-P--NNCDCIGNLGIAYFQSGDMEQSAKCFQDLI 227 (470)
Q Consensus 179 ~~~~~~A~~~~~~a~~~----~-~--~~~~~~~~la~~~~~~g~~~~A~~~~~~~l 227 (470)
...+++|++.|.-|+-. . + .-+..+..+|++|...|+.+.....+++|+
T Consensus 90 ~Rt~~~ai~~YkLAll~~~~~~~~~s~~A~l~LrlAWlyR~~~~~~~E~~fl~~Al 145 (214)
T PF09986_consen 90 ERTLEEAIESYKLALLCAQIKKEKPSKKAGLCLRLAWLYRDLGDEENEKRFLRKAL 145 (214)
T ss_pred CCCHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHhhccCCHHHHHHHHHHHH
Confidence 34566677766666532 1 1 125578889999999998555555544444
|
|
| >KOG2422 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=96.10 E-value=0.68 Score=43.36 Aligned_cols=159 Identities=15% Similarity=0.089 Sum_probs=112.8
Q ss_pred ccCcccHHHHHHHHHHhhh------------cCccchHHHHHHHHHHHHcCChHHHHHHHHHHhhc-----C--------
Q 012143 142 ELEPEELEEILSKLKESMQ------------SDTRQAVVWNTLGLILLKSGRLQSSISVLSSLLAV-----D-------- 196 (470)
Q Consensus 142 ~~~~~~~~~A~~~~~~~~~------------~~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~-----~-------- 196 (470)
+-....|++|...|.-+.. ..|.+.+.+..++.+...+|+.+.|....++++=. .
T Consensus 248 ~~hs~sYeqaq~~F~~av~~~d~n~v~~lL~ssPYHvdsLLqva~~~r~qgD~e~aadLieR~Ly~~d~a~hp~F~~~sg 327 (665)
T KOG2422|consen 248 FEHSNSYEQAQRDFYLAVIVHDPNNVLILLISSPYHVDSLLQVADIFRFQGDREMAADLIERGLYVFDRALHPNFIPFSG 327 (665)
T ss_pred eecchHHHHHHHHHHHHHhhcCCcceeeeeccCCcchhHHHHHHHHHHHhcchhhHHHHHHHHHHHHHHHhccccccccc
Confidence 3355678888888877654 34777889999999999999999988888887631 2
Q ss_pred --------CCChH---HHHHHHHHHHHcCCHHHHHHHHHHHHhhCCC-ChHHHHHHHHHHHhhhcccccccccchhhhhH
Q 012143 197 --------PNNCD---CIGNLGIAYFQSGDMEQSAKCFQDLILKDQN-HPAALINYAALLLCKYGSVLAGAGANTGEGAC 264 (470)
Q Consensus 197 --------~~~~~---~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~-~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~ 264 (470)
|.+.. +++..-..+.+.|-+..|.++.+-.+.++|. +|-+...+...|.-
T Consensus 328 ~cRL~y~~~eNR~FyL~l~r~m~~l~~RGC~rTA~E~cKlllsLdp~eDPl~~l~~ID~~AL------------------ 389 (665)
T KOG2422|consen 328 NCRLPYIYPENRQFYLALFRYMQSLAQRGCWRTALEWCKLLLSLDPSEDPLGILYLIDIYAL------------------ 389 (665)
T ss_pred cccCcccchhhHHHHHHHHHHHHHHHhcCChHHHHHHHHHHhhcCCcCCchhHHHHHHHHHH------------------
Confidence 22222 3444455667889999999999999999998 88777666666653
Q ss_pred HHhcCCHHHHHHHHHHH-----HhcCCCCHHHHHHHHHHHHHcCC---hhHHHHHHHHHHhcCCC
Q 012143 265 LDQASAVNVAKECLLAA-----LKADPKAAHIWANLANAYYLTGD---HRSSGKCLEKAAKLEPN 321 (470)
Q Consensus 265 ~~~~~~~~~A~~~~~~~-----~~~~p~~~~~~~~la~~~~~~g~---~~~A~~~~~~a~~~~p~ 321 (470)
+..+|.=-++.++.. +..-|+ ...-..++..|..... .+.|...+.+|+...|.
T Consensus 390 --rareYqwiI~~~~~~e~~n~l~~~PN-~~yS~AlA~f~l~~~~~~~rqsa~~~l~qAl~~~P~ 451 (665)
T KOG2422|consen 390 --RAREYQWIIELSNEPENMNKLSQLPN-FGYSLALARFFLRKNEEDDRQSALNALLQALKHHPL 451 (665)
T ss_pred --HHHhHHHHHHHHHHHHhhccHhhcCC-chHHHHHHHHHHhcCChhhHHHHHHHHHHHHHhCcH
Confidence 566677677766655 223344 2333445666666555 56788889999988884
|
|
| >PF13374 TPR_10: Tetratricopeptide repeat; PDB: 3CEQ_B 3EDT_H 3NF1_A | Back alignment and domain information |
|---|
Probab=96.05 E-value=0.018 Score=33.18 Aligned_cols=31 Identities=32% Similarity=0.319 Sum_probs=24.8
Q ss_pred HHHHHHHHHHHHcCChHHHHHHHHHHHHhhc
Q 012143 436 HIWANLANAYYLTGDHRSSGKCLEKVLMVYC 466 (470)
Q Consensus 436 ~~~~~la~~~~~~g~~~~A~~~~~~al~~~~ 466 (470)
.++.++|.+|...|++++|..++++++++..
T Consensus 3 ~~~~~la~~~~~~g~~~~A~~~~~~al~~~~ 33 (42)
T PF13374_consen 3 SALNNLANAYRAQGRYEEALELLEEALEIRE 33 (42)
T ss_dssp HHHHHHHHHHHHCT-HHHHHHHHHHHHHHH-
T ss_pred HHHHHHHHHHHhhhhcchhhHHHHHHHHHHH
Confidence 4678889999999999999999999888764
|
|
| >PF10602 RPN7: 26S proteasome subunit RPN7; InterPro: IPR019585 This entry represents the regulatory subunit RPN7 (known as the non-ATPase regulatory subunit 6 in higher eukaryotes) of the 26S proteasome | Back alignment and domain information |
|---|
Probab=96.03 E-value=0.16 Score=40.76 Aligned_cols=102 Identities=16% Similarity=0.038 Sum_probs=73.3
Q ss_pred hHHHHHHHHHHHHcCChHHHHHHHHHHhhcCCCC---hHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCC--ChHHHHHH
Q 012143 166 AVVWNTLGLILLKSGRLQSSISVLSSLLAVDPNN---CDCIGNLGIAYFQSGDMEQSAKCFQDLILKDQN--HPAALINY 240 (470)
Q Consensus 166 ~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~---~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~--~~~~~~~l 240 (470)
..++..+|..|.+.|+.++|++.|.++....... .+.++.+..+....|++.....+..++-..-.. ++.. .+.
T Consensus 36 r~~~~~l~~~~~~~Gd~~~A~k~y~~~~~~~~~~~~~id~~l~~irv~i~~~d~~~v~~~i~ka~~~~~~~~d~~~-~nr 114 (177)
T PF10602_consen 36 RMALEDLADHYCKIGDLEEALKAYSRARDYCTSPGHKIDMCLNVIRVAIFFGDWSHVEKYIEKAESLIEKGGDWER-RNR 114 (177)
T ss_pred HHHHHHHHHHHHHhhhHHHHHHHHHHHhhhcCCHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHhccchHHH-HHH
Confidence 4578899999999999999999999988764332 467888889999999999999999998765322 2222 222
Q ss_pred HHHHHhhhcccccccccchhhhhHHHhcCCHHHHHHHHHHHHhc
Q 012143 241 AALLLCKYGSVLAGAGANTGEGACLDQASAVNVAKECLLAALKA 284 (470)
Q Consensus 241 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~ 284 (470)
-.++. |..+...++|..|.+.|-.+...
T Consensus 115 lk~~~----------------gL~~l~~r~f~~AA~~fl~~~~t 142 (177)
T PF10602_consen 115 LKVYE----------------GLANLAQRDFKEAAELFLDSLST 142 (177)
T ss_pred HHHHH----------------HHHHHHhchHHHHHHHHHccCcC
Confidence 22222 44445677777777777666543
|
This entry also matches the evolutionarily related subunit 1 of the COP9 signalosome complex (CSN) from Arabidopsis []. The 26S proteasome plays a major role in ATP-dependent degradation of ubiquitinated proteins. Substrate specificity is conferred by the regulatory particle (RP), which can dissociate into stable lid and base subcomplexes. The regulatory subunit RPN7 is one of the lid subunits of the 26S proteasome and has been shown in Saccharomyces cerevisiae (Baker's yeast) to be required for structural integrity []. The COP9 signalosome is a conserved protein complex composed of eight subunits, where Individual subunits of the complex have been linked to various signal transduction pathways leading to gene expression and cell cycle control []. The overall organisation and the amino acid sequences of the COP9 signalosome subunits resemble the lid subcomplex of the 19 S regulatory particle for the 26 S proteasome []. COP9 subunit 1 (CSN1 or GPS1) of the COP9 complex is an essential subunit of the complex with regard to both structural integrity and functionality. The N-terminal region of subunit 1 (CSN1-N) can inhibit c-fos expression from either a transfected template or a chromosomal transgene (fos-lacZ), and may contain the activity domain that confers most of the repression functions of CSN1. The C-terminal region of subunit 1 (CSN1-C) allows integration of the protein into the COP9 signalosome. |
| >COG4976 Predicted methyltransferase (contains TPR repeat) [General function prediction only] | Back alignment and domain information |
|---|
Probab=96.01 E-value=0.013 Score=47.46 Aligned_cols=59 Identities=17% Similarity=0.293 Sum_probs=40.8
Q ss_pred HHHcCChHHHHHHHHHHhhcCCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCh
Q 012143 176 LLKSGRLQSSISVLSSLLAVDPNNCDCIGNLGIAYFQSGDMEQSAKCFQDLILKDQNHP 234 (470)
Q Consensus 176 ~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~ 234 (470)
....++.+.|.+.|.+++.+.|+....|+.+|....+.|+++.|...|++.++++|.+.
T Consensus 5 ~~~~~D~~aaaely~qal~lap~w~~gwfR~g~~~ekag~~daAa~a~~~~L~ldp~D~ 63 (287)
T COG4976 5 LAESGDAEAAAELYNQALELAPEWAAGWFRLGEYTEKAGEFDAAAAAYEEVLELDPEDH 63 (287)
T ss_pred hcccCChHHHHHHHHHHhhcCchhhhhhhhcchhhhhcccHHHHHHHHHHHHcCCcccc
Confidence 34556666777777777777777777777777777777777777777777777776553
|
|
| >COG4649 Uncharacterized protein conserved in bacteria [Function unknown] | Back alignment and domain information |
|---|
Probab=95.99 E-value=0.49 Score=36.85 Aligned_cols=54 Identities=11% Similarity=0.164 Sum_probs=32.1
Q ss_pred hhhhcChhhHHHHHHHHHHhCCCC--hhHHHHHHHHHHHhCChhHHHHHHHHHHHH
Q 012143 51 SSREEKVSSLKTGLVHVARKMPKN--AHAHFLLGLMYQRLGQPLKAVSSYEKAEEI 104 (470)
Q Consensus 51 ~~~~~~~~~A~~~~~~~l~~~p~~--~~~~~~l~~~~~~~g~~~~A~~~~~~al~~ 104 (470)
+...++.++|...|..+-+..-.. .-+.+..|.+..+.|+...|+..|..+-..
T Consensus 68 lA~~~k~d~Alaaf~~lektg~g~YpvLA~mr~at~~a~kgdta~AV~aFdeia~d 123 (221)
T COG4649 68 LAQENKTDDALAAFTDLEKTGYGSYPVLARMRAATLLAQKGDTAAAVAAFDEIAAD 123 (221)
T ss_pred HHHcCCchHHHHHHHHHHhcCCCcchHHHHHHHHHHHhhcccHHHHHHHHHHHhcc
Confidence 445566666666666554443322 224555666667777777777777766554
|
|
| >PRK15180 Vi polysaccharide biosynthesis protein TviD; Provisional | Back alignment and domain information |
|---|
Probab=95.99 E-value=0.055 Score=48.97 Aligned_cols=124 Identities=14% Similarity=0.023 Sum_probs=73.6
Q ss_pred HHcCChHHHHHHHHHHhhcCCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCChHHHHHHHHHHHhhhcccccccc
Q 012143 177 LKSGRLQSSISVLSSLLAVDPNNCDCIGNLGIAYFQSGDMEQSAKCFQDLILKDQNHPAALINYAALLLCKYGSVLAGAG 256 (470)
Q Consensus 177 ~~~~~~~~A~~~~~~a~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~l~~~~~~~~~~~~~~~~ 256 (470)
...|+.-.|-.-...++...|.+|......+.+...+|+|+.+...+..+-..-.....+...+-....
T Consensus 300 ~~~gd~~aas~~~~~~lr~~~~~p~~i~l~~~i~~~lg~ye~~~~~~s~~~~~~~s~~~~~~~~~r~~~----------- 368 (831)
T PRK15180 300 LADGDIIAASQQLFAALRNQQQDPVLIQLRSVIFSHLGYYEQAYQDISDVEKIIGTTDSTLRCRLRSLH----------- 368 (831)
T ss_pred hhccCHHHHHHHHHHHHHhCCCCchhhHHHHHHHHHhhhHHHHHHHhhchhhhhcCCchHHHHHHHhhh-----------
Confidence 345677777777777777777777777777777777777777777665544332222222222222222
Q ss_pred cchhhhhHHHhcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCChhHHHHHHHHHHhcCCC
Q 012143 257 ANTGEGACLDQASAVNVAKECLLAALKADPKAAHIWANLANAYYLTGDHRSSGKCLEKAAKLEPN 321 (470)
Q Consensus 257 ~~~~~~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~p~ 321 (470)
..|++++|.....-.+.-.-+++++..--+.....+|-++++..++++.+.++|.
T Consensus 369 ----------~l~r~~~a~s~a~~~l~~eie~~ei~~iaa~sa~~l~~~d~~~~~wk~~~~~~~~ 423 (831)
T PRK15180 369 ----------GLARWREALSTAEMMLSNEIEDEEVLTVAAGSADALQLFDKSYHYWKRVLLLNPE 423 (831)
T ss_pred ----------chhhHHHHHHHHHHHhccccCChhheeeecccHHHHhHHHHHHHHHHHHhccCCh
Confidence 4666666666666665555555555555555555566666666666666666554
|
|
| >KOG2396 consensus HAT (Half-A-TPR) repeat-containing protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=95.96 E-value=1.3 Score=40.81 Aligned_cols=82 Identities=7% Similarity=-0.111 Sum_probs=71.7
Q ss_pred HHHHHHHhcCCCCcchhhhcccchhhhhcChhhHHHHHHHHHHhCCCChhHHHHHHHHHHHhCC-hhHHHHHHHHHHHHH
Q 012143 27 SKMDSALEFGVDADGDQSGLGTSSSSREEKVSSLKTGLVHVARKMPKNAHAHFLLGLMYQRLGQ-PLKAVSSYEKAEEIL 105 (470)
Q Consensus 27 ~~~~~~l~~~p~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~l~~~~~~~g~-~~~A~~~~~~al~~~ 105 (470)
..|..++...+.+...|.....- ..+.+.+.+....|.+++..+|++++.|..-|.-.+..+. ++.|...|.++++.+
T Consensus 92 ~lyr~at~rf~~D~~lW~~yi~f-~kk~~~~~~v~ki~~~~l~~Hp~~~dLWI~aA~wefe~n~ni~saRalflrgLR~n 170 (568)
T KOG2396|consen 92 FLYRRATNRFNGDVKLWLSYIAF-CKKKKTYGEVKKIFAAMLAKHPNNPDLWIYAAKWEFEINLNIESARALFLRGLRFN 170 (568)
T ss_pred HHHHHHHHhcCCCHHHHHHHHHH-HHHhcchhHHHHHHHHHHHhCCCCchhHHhhhhhHHhhccchHHHHHHHHHHhhcC
Confidence 67888888889899999877766 6677779999999999999999999999999988888776 999999999999998
Q ss_pred hhhh
Q 012143 106 LRCE 109 (470)
Q Consensus 106 ~~~~ 109 (470)
|+.+
T Consensus 171 pdsp 174 (568)
T KOG2396|consen 171 PDSP 174 (568)
T ss_pred CCCh
Confidence 8764
|
|
| >TIGR02561 HrpB1_HrpK type III secretion protein HrpB1/HrpK | Back alignment and domain information |
|---|
Probab=95.95 E-value=0.066 Score=40.47 Aligned_cols=74 Identities=15% Similarity=0.099 Sum_probs=60.4
Q ss_pred CcccHHHHHHHHHHhhhcCccchHHHHHHHHHHHHcCChHHHHHHHHHHhhcCCCChHHHHHHHHHHHHcCCHH
Q 012143 144 EPEELEEILSKLKESMQSDTRQAVVWNTLGLILLKSGRLQSSISVLSSLLAVDPNNCDCIGNLGIAYFQSGDME 217 (470)
Q Consensus 144 ~~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~la~~~~~~g~~~ 217 (470)
..++++++..++..+--..|+.+..-..-|.++...|+|.+|+..++...+-.+..+...-.++.|+.-+|+.+
T Consensus 22 ~~~d~~D~e~lLdALrvLrP~~~e~d~~dg~l~i~rg~w~eA~rvlr~l~~~~~~~p~~kAL~A~CL~al~Dp~ 95 (153)
T TIGR02561 22 RSADPYDAQAMLDALRVLRPNLKELDMFDGWLLIARGNYDEAARILRELLSSAGAPPYGKALLALCLNAKGDAE 95 (153)
T ss_pred hcCCHHHHHHHHHHHHHhCCCccccchhHHHHHHHcCCHHHHHHHHHhhhccCCCchHHHHHHHHHHHhcCChH
Confidence 34566888888888878888888888888888888899999998888888877777877788888888887754
|
This gene is found within type III secretion operons in a limited range of species including Xanthomonas, Ralstonia and Burkholderia. |
| >COG4976 Predicted methyltransferase (contains TPR repeat) [General function prediction only] | Back alignment and domain information |
|---|
Probab=95.84 E-value=0.019 Score=46.50 Aligned_cols=60 Identities=22% Similarity=0.302 Sum_probs=56.2
Q ss_pred HHhcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCChhHHHHHHHHHHhcCCCccc
Q 012143 265 LDQASAVNVAKECLLAALKADPKAAHIWANLANAYYLTGDHRSSGKCLEKAAKLEPNCMS 324 (470)
Q Consensus 265 ~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~p~~~~ 324 (470)
..+.++.+.|.+.|.+++.+.|+....|+.+|....+.|+++.|.+.|++.++++|.+..
T Consensus 5 ~~~~~D~~aaaely~qal~lap~w~~gwfR~g~~~ekag~~daAa~a~~~~L~ldp~D~~ 64 (287)
T COG4976 5 LAESGDAEAAAELYNQALELAPEWAAGWFRLGEYTEKAGEFDAAAAAYEEVLELDPEDHG 64 (287)
T ss_pred hcccCChHHHHHHHHHHhhcCchhhhhhhhcchhhhhcccHHHHHHHHHHHHcCCccccc
Confidence 347899999999999999999999999999999999999999999999999999998754
|
|
| >PF04190 DUF410: Protein of unknown function (DUF410) ; InterPro: IPR007317 This is a family of conserved eukaryotic proteins with undetermined function | Back alignment and domain information |
|---|
Probab=95.77 E-value=1.1 Score=38.55 Aligned_cols=80 Identities=13% Similarity=0.088 Sum_probs=50.4
Q ss_pred HHHHHHHHHhhhcCccchHHHHHHHHHHHHcCChHHHHHHHHHH----------------hhcCCCChHHHHHHHHH-HH
Q 012143 149 EEILSKLKESMQSDTRQAVVWNTLGLILLKSGRLQSSISVLSSL----------------LAVDPNNCDCIGNLGIA-YF 211 (470)
Q Consensus 149 ~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~a----------------~~~~~~~~~~~~~la~~-~~ 211 (470)
..|+++- +.-...-.++..+..+|..+.+.|++.+|..+|-.. .+..|...+.+...+.+ |.
T Consensus 74 ~~ai~WS-~~~~~~~Gdp~LH~~~a~~~~~e~~~~~A~~Hfl~~~~~~~~~~~~ll~~~~~~~~~~e~dlfi~RaVL~yL 152 (260)
T PF04190_consen 74 KAAIKWS-KFGSYKFGDPELHHLLAEKLWKEGNYYEAERHFLLGTDPSAFAYVMLLEEWSTKGYPSEADLFIARAVLQYL 152 (260)
T ss_dssp HHHHHHH-HTSS-TT--HHHHHHHHHHHHHTT-HHHHHHHHHTS-HHHHHHHHHHHHHHHHHTSS--HHHHHHHHHHHHH
T ss_pred HHHHHHH-ccCCCCCCCHHHHHHHHHHHHhhccHHHHHHHHHhcCChhHHHHHHHHHHHHHhcCCcchhHHHHHHHHHHH
Confidence 4455555 322333367889999999999999999988887432 12245556666655544 56
Q ss_pred HcCCHHHHHHHHHHHHhh
Q 012143 212 QSGDMEQSAKCFQDLILK 229 (470)
Q Consensus 212 ~~g~~~~A~~~~~~~l~~ 229 (470)
..++...|...+...++.
T Consensus 153 ~l~n~~~A~~~~~~f~~~ 170 (260)
T PF04190_consen 153 CLGNLRDANELFDTFTSK 170 (260)
T ss_dssp HTTBHHHHHHHHHHHHHH
T ss_pred HhcCHHHHHHHHHHHHHH
Confidence 779999998887776654
|
; PDB: 3LKU_E 2WPV_G. |
| >COG5107 RNA14 Pre-mRNA 3'-end processing (cleavage and polyadenylation) factor [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=95.71 E-value=1.6 Score=39.78 Aligned_cols=296 Identities=13% Similarity=0.109 Sum_probs=174.4
Q ss_pred HHHHhhhcCccchHHHHHHHHHHHHcCChHHHHHHHHHHhhcCCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCC
Q 012143 154 KLKESMQSDTRQAVVWNTLGLILLKSGRLQSSISVLSSLLAVDPNNCDCIGNLGIAYFQSGDMEQSAKCFQDLILKDQNH 233 (470)
Q Consensus 154 ~~~~~~~~~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~ 233 (470)
-++.-++.+|++...|+.+..-+..+|.+++-.+.|++...-.|-.+.+|...-..-...+++..-...|.+++...-+
T Consensus 30 rLRerIkdNPtnI~S~fqLiq~~~tq~s~~~~re~yeq~~~pfp~~~~aw~ly~s~ELA~~df~svE~lf~rCL~k~l~- 108 (660)
T COG5107 30 RLRERIKDNPTNILSYFQLIQYLETQESMDAEREMYEQLSSPFPIMEHAWRLYMSGELARKDFRSVESLFGRCLKKSLN- 108 (660)
T ss_pred HHHHHhhcCchhHHHHHHHHHHHhhhhhHHHHHHHHHHhcCCCccccHHHHHHhcchhhhhhHHHHHHHHHHHHhhhcc-
Confidence 5667788899999999999999999999999999999999888888888876666566678898888999998864332
Q ss_pred hHHHHHHHHHHHhhhcccccccccchhhhhHHHhcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHH---------cCC
Q 012143 234 PAALINYAALLLCKYGSVLAGAGANTGEGACLDQASAVNVAKECLLAALKADPKAAHIWANLANAYYL---------TGD 304 (470)
Q Consensus 234 ~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~la~~~~~---------~g~ 304 (470)
.+.|...... ..+.... ..| ...-..-+|.++.-.++-.+|.....|...+..+.. +.+
T Consensus 109 ldLW~lYl~Y-IRr~n~~--------~tG---q~r~~i~~ayefv~~~~~~e~~s~~~W~ey~~fle~~~~~~kwEeQqr 176 (660)
T COG5107 109 LDLWMLYLEY-IRRVNNL--------ITG---QKRFKIYEAYEFVLGCAIFEPQSENYWDEYGLFLEYIEELGKWEEQQR 176 (660)
T ss_pred HhHHHHHHHH-HHhhCcc--------ccc---chhhhhHHHHHHHHhcccccccccchHHHHHHHHHhccccccHHHHHH
Confidence 3444332222 2110000 000 011223445555555555678888888777765543 344
Q ss_pred hhHHHHHHHHHHhcCCCcccHHH-H-----HHHHHHHHhhhccCchHHhhhh---HHHHHHHhhcCCCCC----------
Q 012143 305 HRSSGKCLEKAAKLEPNCMSTRY-A-----VAVSRIKDAERSQEPTEQLSWA---GNEMASILREGDPVQ---------- 365 (470)
Q Consensus 305 ~~~A~~~~~~a~~~~p~~~~~~~-~-----l~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~---------- 365 (470)
.+.-...|.+++..--++..-.+ . ..+..+....-.-+....+..+ ..++...........
T Consensus 177 id~iR~~Y~ral~tP~~nleklW~dy~~fE~e~N~~TarKfvge~sp~ym~ar~~yqe~~nlt~Gl~v~~~~~~Rt~nK~ 256 (660)
T COG5107 177 IDKIRNGYMRALQTPMGNLEKLWKDYENFELELNKITARKFVGETSPIYMSARQRYQEIQNLTRGLSVKNPINLRTANKA 256 (660)
T ss_pred HHHHHHHHHHHHcCccccHHHHHHHHHHHHHHHHHHHHHHHhcccCHHHHHHHHHHHHHHHHhccccccCchhhhhhccc
Confidence 56677788888875434332211 1 1111111000000111111111 122221111111111
Q ss_pred -CCcHHHHHHHHHHHhccc------cHHHHH-HHHHHHhc--chhhhhHhhHHHHHHHhccHHHHHHHHHHHHhcCCCcH
Q 012143 366 -IEPPIAWAGFAAVQKTHH------EVAAAF-ETEENELS--KMEECAGAGESAFLDQASAVNVAKECLLAALKADPKAA 435 (470)
Q Consensus 366 -~~~~~~~~~l~~~~~~~~------~~~~A~-~~~~~~~~--~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~p~~~ 435 (470)
.....-|.++.......| -..+-+ -.+.+.+. +..++.|+.....+...++-+.|+...++++...|.
T Consensus 257 ~r~s~S~WlNwIkwE~en~l~L~~~~~~qRi~y~~~q~~~y~~~~~evw~dys~Y~~~isd~q~al~tv~rg~~~sps-- 334 (660)
T COG5107 257 ARTSDSNWLNWIKWEMENGLKLGGRPHEQRIHYIHNQILDYFYYAEEVWFDYSEYLIGISDKQKALKTVERGIEMSPS-- 334 (660)
T ss_pred cccccchhhhHhhHhhcCCcccCCCcHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHhhccHHHHHHHHHHhcccCCCc--
Confidence 111123555544443322 112222 12333444 455677887777888888999999988888777665
Q ss_pred HHHHHHHHHHHHcCChHHHHHHHHHHHHhh
Q 012143 436 HIWANLANAYYLTGDHRSSGKCLEKVLMVY 465 (470)
Q Consensus 436 ~~~~~la~~~~~~g~~~~A~~~~~~al~~~ 465 (470)
....++.+|...++.+.-..+|+++.+-+
T Consensus 335 -L~~~lse~yel~nd~e~v~~~fdk~~q~L 363 (660)
T COG5107 335 -LTMFLSEYYELVNDEEAVYGCFDKCTQDL 363 (660)
T ss_pred -hheeHHHHHhhcccHHHHhhhHHHHHHHH
Confidence 77889999999999888888888877644
|
|
| >COG5191 Uncharacterized conserved protein, contains HAT (Half-A-TPR) repeat [General function prediction only] | Back alignment and domain information |
|---|
Probab=95.71 E-value=0.027 Score=47.89 Aligned_cols=89 Identities=17% Similarity=0.242 Sum_probs=77.4
Q ss_pred HHHHhhhcCccchHHHHHHHHHHHHcCChHHHHHHHHHHhhcCCCChHHHHH-HHHHHHHcCCHHHHHHHHHHHHhhCCC
Q 012143 154 KLKESMQSDTRQAVVWNTLGLILLKSGRLQSSISVLSSLLAVDPNNCDCIGN-LGIAYFQSGDMEQSAKCFQDLILKDQN 232 (470)
Q Consensus 154 ~~~~~~~~~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~-la~~~~~~g~~~~A~~~~~~~l~~~p~ 232 (470)
.|.++....|+++..|...+..-...|.+.+--..|.+++..+|.+.+.|.. .+.-+...++++.+...|.++++.+|.
T Consensus 95 ~~~R~tnkff~D~k~w~~y~~Y~~k~k~y~~~~nI~~~~l~khP~nvdlWI~~c~~e~~~~ani~s~Ra~f~~glR~N~~ 174 (435)
T COG5191 95 ELYRSTNKFFNDPKIWSQYAAYVIKKKMYGEMKNIFAECLTKHPLNVDLWIYCCAFELFEIANIESSRAMFLKGLRMNSR 174 (435)
T ss_pred eeehhhhcCCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCceeeeeeccchhhhhccHHHHHHHHHhhhccCCC
Confidence 4455666788999999999888888999999999999999999999999987 566678899999999999999999999
Q ss_pred ChHHHHHHHH
Q 012143 233 HPAALINYAA 242 (470)
Q Consensus 233 ~~~~~~~l~~ 242 (470)
++..|...-.
T Consensus 175 ~p~iw~eyfr 184 (435)
T COG5191 175 SPRIWIEYFR 184 (435)
T ss_pred CchHHHHHHH
Confidence 9988875543
|
|
| >KOG3364 consensus Membrane protein involved in organellar division [Cell wall/membrane/envelope biogenesis] | Back alignment and domain information |
|---|
Probab=95.57 E-value=0.18 Score=37.30 Aligned_cols=60 Identities=22% Similarity=0.144 Sum_probs=50.2
Q ss_pred cCCHHHHHHHHHHHHh-cCCC-CHHHHHHHHHHHHHcCChhHHHHHHHHHHhcCCCcccHHH
Q 012143 268 ASAVNVAKECLLAALK-ADPK-AAHIWANLANAYYLTGDHRSSGKCLEKAAKLEPNCMSTRY 327 (470)
Q Consensus 268 ~~~~~~A~~~~~~~~~-~~p~-~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~p~~~~~~~ 327 (470)
..+..+.+.+++..++ ..|. .-+..+.|+..+++.|+|+.++.+.+..++..|++..+..
T Consensus 48 ~~dv~~GI~iLe~l~~~~~~~~rRe~lyYLAvg~yRlkeY~~s~~yvd~ll~~e~~n~Qa~~ 109 (149)
T KOG3364|consen 48 TEDVQEGIVILEDLLKSAHPERRRECLYYLAVGHYRLKEYSKSLRYVDALLETEPNNRQALE 109 (149)
T ss_pred hHHHHHhHHHHHHHhhhcCcccchhhhhhhHHHHHHHhhHHHHHHHHHHHHhhCCCcHHHHH
Confidence 4567788999999996 4554 4567888999999999999999999999999999877654
|
|
| >KOG0128 consensus RNA-binding protein SART3 (RRM superfamily) [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=95.47 E-value=2.9 Score=41.21 Aligned_cols=266 Identities=10% Similarity=0.033 Sum_probs=160.2
Q ss_pred hhhHHHHHHHHHHHHhcCCCCcchhhhcccchhhhhcChhhHHHHHHHHHHhCCCChhHHHHHHHHHHH---hCChhHHH
Q 012143 19 GKCRSRISSKMDSALEFGVDADGDQSGLGTSSSSREEKVSSLKTGLVHVARKMPKNAHAHFLLGLMYQR---LGQPLKAV 95 (470)
Q Consensus 19 g~~~~a~~~~~~~~l~~~p~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~l~~~~~~---~g~~~~A~ 95 (470)
|.....+ .+++.-+.+++-+......+-.+ +...|++++....-.++....|.++..|.....-... .+...++.
T Consensus 93 ~~~~~ei-~t~~ee~ai~~y~~~~~v~Li~l-lrk~~dl~kl~~ar~~~~~~~pl~~~lWl~Wl~d~~~mt~s~~~~~v~ 170 (881)
T KOG0128|consen 93 GGGNQEI-RTLEEELAINSYKYAQMVQLIGL-LRKLGDLEKLRQARLEMSEIAPLPPHLWLEWLKDELSMTQSEERKEVE 170 (881)
T ss_pred ccchhHH-HHHHHHhcccccchHHHHHHHHH-HHHhcchHHHHHHHHHHHHhcCCChHHHHHHHHHHHhhccCcchhHHH
Confidence 3444555 67777778888777777777777 8889999998888888888899998888765544433 35677888
Q ss_pred HHHHHHHHHHhhhhcccchhhhHHHHHHhhhccccccccCCCccccccCcccHHHHHHHHHHhhhcCc-------cchHH
Q 012143 96 SSYEKAEEILLRCEADIARPELLSLVQIHHAQCLLPESSGDNSLDKELEPEELEEILSKLKESMQSDT-------RQAVV 168 (470)
Q Consensus 96 ~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~p-------~~~~~ 168 (470)
..|++++.-.-. .+-+...+......+.+ +...++++.-...|.+++..-- .....
T Consensus 171 ~~~ekal~dy~~------v~iw~e~~~y~~~~~~~-----------~~~~~d~k~~R~vf~ral~s~g~~~t~G~~~we~ 233 (881)
T KOG0128|consen 171 ELFEKALGDYNS------VPIWEEVVNYLVGFGNV-----------AKKSEDYKKERSVFERALRSLGSHITEGAAIWEM 233 (881)
T ss_pred HHHHHHhccccc------chHHHHHHHHHHhcccc-----------ccccccchhhhHHHHHHHhhhhhhhcccHHHHHH
Confidence 888888863211 12222222333333322 3455677888888888876432 22344
Q ss_pred HHHHHHHHHHcCChHHHHHHHHHHhhcCCCChHH----HHHHH---HHHHHcCCHHHHHHHHHHHH-------hhCCCCh
Q 012143 169 WNTLGLILLKSGRLQSSISVLSSLLAVDPNNCDC----IGNLG---IAYFQSGDMEQSAKCFQDLI-------LKDQNHP 234 (470)
Q Consensus 169 ~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~----~~~la---~~~~~~g~~~~A~~~~~~~l-------~~~p~~~ 234 (470)
+...-..|...-..++-+.++...+... -+.++ |.... .......+++.|...+.+.+ ...|.-.
T Consensus 234 ~~E~e~~~l~n~~~~qv~a~~~~el~~~-~D~~~~~~~~~~~sk~h~~~~~~~~~~~a~~~l~~~~~~~e~~~q~~~~~~ 312 (881)
T KOG0128|consen 234 YREFEVTYLCNVEQRQVIALFVRELKQP-LDEDTRGWDLSEQSKAHVYDVETKKLDDALKNLAKILFKFERLVQKEPIKD 312 (881)
T ss_pred HHHHHHHHHHhHHHHHHHHHHHHHHhcc-chhhhhHHHHHHHHhcchHHHHhccHHHHHHHHHHHHHHHHHHhhhhHHHH
Confidence 5555555665555577777777777654 22211 11111 11223445555655544433 3333333
Q ss_pred HHHHHHHHHHHhhhcccccccccchhhhhHHHhcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHH-HHcCChhHHHHHHH
Q 012143 235 AALINYAALLLCKYGSVLAGAGANTGEGACLDQASAVNVAKECLLAALKADPKAAHIWANLANAY-YLTGDHRSSGKCLE 313 (470)
Q Consensus 235 ~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~la~~~-~~~g~~~~A~~~~~ 313 (470)
..|..+..... ..|.+..-...+++++...+.+...|...+... ..++-.+.+...+.
T Consensus 313 q~~~~yidfe~---------------------~~G~p~ri~l~~eR~~~E~~~~~~~wi~y~~~~d~eLkv~~~~~~~~~ 371 (881)
T KOG0128|consen 313 QEWMSYIDFEK---------------------KSGDPVRIQLIEERAVAEMVLDRALWIGYGVYLDTELKVPQRGVSVHP 371 (881)
T ss_pred HHHHHHHHHHH---------------------hcCCchHHHHHHHHHHHhccccHHHHhhhhhhcccccccccccccccc
Confidence 33333333332 678888888888888888888788877776543 33445555666677
Q ss_pred HHHhcCCCcccH
Q 012143 314 KAAKLEPNCMST 325 (470)
Q Consensus 314 ~a~~~~p~~~~~ 325 (470)
++++..|-....
T Consensus 372 ra~R~cp~tgdL 383 (881)
T KOG0128|consen 372 RAVRSCPWTGDL 383 (881)
T ss_pred hhhcCCchHHHH
Confidence 777776665443
|
|
| >KOG1538 consensus Uncharacterized conserved protein WDR10, contains WD40 repeats [General function prediction only] | Back alignment and domain information |
|---|
Probab=95.45 E-value=2.5 Score=40.40 Aligned_cols=58 Identities=14% Similarity=0.208 Sum_probs=35.5
Q ss_pred chhhhcccchhhhhcChhhHHHHHHHHHH--------------hCCCChhHHHHHHHHHHHhCChhHHHHHHHH
Q 012143 41 GDQSGLGTSSSSREEKVSSLKTGLVHVAR--------------KMPKNAHAHFLLGLMYQRLGQPLKAVSSYEK 100 (470)
Q Consensus 41 ~~~~~~~~~~~~~~~~~~~A~~~~~~~l~--------------~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~ 100 (470)
..|..++.. ....=+++.|.+.|.++-. .....| --..+|.++.-.|+|.+|...|.+
T Consensus 586 ~DW~~LA~~-ALeAL~f~~ARkAY~rVRdl~~L~li~EL~~~k~rge~P-~~iLlA~~~Ay~gKF~EAAklFk~ 657 (1081)
T KOG1538|consen 586 TDWRELAME-ALEALDFETARKAYIRVRDLRYLELISELEERKKRGETP-NDLLLADVFAYQGKFHEAAKLFKR 657 (1081)
T ss_pred chHHHHHHH-HHhhhhhHHHHHHHHHHhccHHHHHHHHHHHHHhcCCCc-hHHHHHHHHHhhhhHHHHHHHHHH
Confidence 356677776 6667777888887776521 111112 223466777777777777777765
|
|
| >KOG0529 consensus Protein geranylgeranyltransferase type II, alpha subunit [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=95.44 E-value=1.1 Score=40.35 Aligned_cols=163 Identities=14% Similarity=0.116 Sum_probs=121.2
Q ss_pred HHHHHHHHHhhhcCccchHHHHHHHHHHHH------------cCChHHHHHHHHHHhhcCCCChHHHHHHHHHHHHcCC-
Q 012143 149 EEILSKLKESMQSDTRQAVVWNTLGLILLK------------SGRLQSSISVLSSLLAVDPNNCDCIGNLGIAYFQSGD- 215 (470)
Q Consensus 149 ~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~------------~~~~~~A~~~~~~a~~~~~~~~~~~~~la~~~~~~g~- 215 (470)
.+++..=.+.+..+|+...+|...-.++.. +.-.++-+.+...+++.+|++..+|+.+.+++.+.+.
T Consensus 46 ~e~l~lt~~ll~~npe~~t~wN~Rr~~~~~r~~~~~~~~~ek~~~ld~eL~~~~~~L~~npksY~aW~hR~w~L~~~p~~ 125 (421)
T KOG0529|consen 46 EEHLELTSELLEKNPEFYTVWNYRRLIIEERLTRAQLEPLEKQALLDEELKYVESALKVNPKSYGAWHHRKWVLQKNPHS 125 (421)
T ss_pred hHHHHHHHHHHhhCchhhhhhhhHHHHHHHhhhhhcCCHHHHHHhhHHHHHHHHHHHHhCchhHHHHHHHHHHHHhCCCc
Confidence 567788888888899887777654333322 2245667788888999999999999999999997764
Q ss_pred -HHHHHHHHHHHHhhCCCChHHHHHHHHHHHhhhcccccccccchhhhhHHHhcCCHHHHHHHHHHHHhcCCCCHHHHHH
Q 012143 216 -MEQSAKCFQDLILKDQNHPAALINYAALLLCKYGSVLAGAGANTGEGACLDQASAVNVAKECLLAALKADPKAAHIWAN 294 (470)
Q Consensus 216 -~~~A~~~~~~~l~~~p~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~ 294 (470)
+..=+...+++++.+|.+..+|...-.+.... -.......+=+++..+++..++.+..+|..
T Consensus 126 ~~~~EL~lcek~L~~D~RNfh~W~YRRfV~~~~-----------------~~~~~~~~~El~ftt~~I~~nfSNYsaWhy 188 (421)
T KOG0529|consen 126 DWNTELQLCEKALKQDPRNFHAWHYRRFVVEQA-----------------ERSRNLEKEELEFTTKLINDNFSNYSAWHY 188 (421)
T ss_pred hHHHHHHHHHHHHhcCcccccchHHHHHHHHHH-----------------hcccccchhHHHHHHHHHhccchhhhHHHH
Confidence 68889999999999999998887665555421 011223667788999999999999999998
Q ss_pred HHHHHHH------cCC------hhHHHHHHHHHHhcCCCcccHHHH
Q 012143 295 LANAYYL------TGD------HRSSGKCLEKAAKLEPNCMSTRYA 328 (470)
Q Consensus 295 la~~~~~------~g~------~~~A~~~~~~a~~~~p~~~~~~~~ 328 (470)
...+... .|+ ...-+..-..++-.+|++..+|+.
T Consensus 189 Rs~lL~~l~~~~~~g~~~~~~~l~sEle~v~saiFTdp~DqS~WfY 234 (421)
T KOG0529|consen 189 RSLLLSTLHPKEADGNFMPKELLQSELEMVHSAIFTDPEDQSCWFY 234 (421)
T ss_pred HHHHHHHhccccccCccCCHHHHHHHHHHHHHHHhcCccccceeee
Confidence 8877763 231 223445566777789999988774
|
|
| >PF12968 DUF3856: Domain of Unknown Function (DUF3856); InterPro: IPR024552 This domain of unknown function is found in a small group of tetratricopeptide-like proteins, which includes the uncharacterised protein Q8KAL8 from SWISSPROT | Back alignment and domain information |
|---|
Probab=95.40 E-value=0.68 Score=33.48 Aligned_cols=115 Identities=10% Similarity=0.052 Sum_probs=70.2
Q ss_pred HHHHHH--HHHHHcCChhHHHHHHHHHHhcCCCccc--HHHHHHHHHHHHhhhccCchHHhhhhHHHHHHHhhcCCCCCC
Q 012143 291 IWANLA--NAYYLTGDHRSSGKCLEKAAKLEPNCMS--TRYAVAVSRIKDAERSQEPTEQLSWAGNEMASILREGDPVQI 366 (470)
Q Consensus 291 ~~~~la--~~~~~~g~~~~A~~~~~~a~~~~p~~~~--~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 366 (470)
+|..|+ .-...-|-|++|...+.+++.....-+. +.-.-+
T Consensus 9 aY~aLs~ae~ql~~g~~~eAa~s~r~AM~~srtiP~eEaFDh~G------------------------------------ 52 (144)
T PF12968_consen 9 AYMALSDAERQLQDGAYEEAAASCRKAMEVSRTIPAEEAFDHDG------------------------------------ 52 (144)
T ss_dssp HHHHHHHHHHHHHHT-HHHHHHHHHHHHHHHTTS-TTS---HHH------------------------------------
T ss_pred HHHHHHHHHHHHHhhhHHHHHHHHHHHHHHhccCChHhhccccc------------------------------------
Confidence 344443 3445668899999999999876544321 000000
Q ss_pred CcHHHHHHHHHHHhccccHHHHHHHHHHHhcchhhhhHhhHHHHHHHhccHHHHHHHHHHHHhcCCCcHHHH----HHHH
Q 012143 367 EPPIAWAGFAAVQKTHHEVAAAFETEENELSKMEECAGAGESAFLDQASAVNVAKECLLAALKADPKAAHIW----ANLA 442 (470)
Q Consensus 367 ~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~----~~la 442 (470)
-+...+..++..+...|+|++++.. -+.|+.+|.+-=+++.+....| ++.|
T Consensus 53 FDA~chA~Ls~A~~~Lgry~e~L~s-------------------------A~~aL~YFNRRGEL~qdeGklWIaaVfsra 107 (144)
T PF12968_consen 53 FDAFCHAGLSGALAGLGRYDECLQS-------------------------ADRALRYFNRRGELHQDEGKLWIAAVFSRA 107 (144)
T ss_dssp HHHHHHHHHHHHHHHTT-HHHHHHH-------------------------HHHHHHHHHHH--TTSTHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhhccHHHHHHH-------------------------HHHHHHHHhhccccccccchhHHHHHHHHH
Confidence 0123455566666666666666544 2456666666666777765544 6788
Q ss_pred HHHHHcCChHHHHHHHHHHHHhhc
Q 012143 443 NAYYLTGDHRSSGKCLEKVLMVYC 466 (470)
Q Consensus 443 ~~~~~~g~~~~A~~~~~~al~~~~ 466 (470)
..+..+|+.++|+..|+++-+++.
T Consensus 108 ~Al~~~Gr~~eA~~~fr~agEMia 131 (144)
T PF12968_consen 108 VALEGLGRKEEALKEFRMAGEMIA 131 (144)
T ss_dssp HHHHHTT-HHHHHHHHHHHHHHHH
T ss_pred HHHHhcCChHHHHHHHHHHHHHHH
Confidence 889999999999999999988763
|
The structure of Q8KAL8 is known and belongs to the SCOP all alpha class, TPR-like superfamily, CT2138-like family.; PDB: 2HR2_D. |
| >TIGR02561 HrpB1_HrpK type III secretion protein HrpB1/HrpK | Back alignment and domain information |
|---|
Probab=95.39 E-value=0.28 Score=37.22 Aligned_cols=73 Identities=16% Similarity=0.173 Sum_probs=39.7
Q ss_pred HHHHHHHHcCChHHHHHHHHHHhhcCCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCChHHHHHHHHH
Q 012143 171 TLGLILLKSGRLQSSISVLSSLLAVDPNNCDCIGNLGIAYFQSGDMEQSAKCFQDLILKDQNHPAALINYAAL 243 (470)
Q Consensus 171 ~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~l~~~ 243 (470)
.....-...++.+++...+...--+.|+.+..-..-|.++...|+|.+|+..++...+..+..+...-.++.+
T Consensus 15 ~~~~~aL~~~d~~D~e~lLdALrvLrP~~~e~d~~dg~l~i~rg~w~eA~rvlr~l~~~~~~~p~~kAL~A~C 87 (153)
T TIGR02561 15 EVLMYALRSADPYDAQAMLDALRVLRPNLKELDMFDGWLLIARGNYDEAARILRELLSSAGAPPYGKALLALC 87 (153)
T ss_pred HHHHHHHhcCCHHHHHHHHHHHHHhCCCccccchhHHHHHHHcCCHHHHHHHHHhhhccCCCchHHHHHHHHH
Confidence 3333444455666666665555555666666666666666666666666666666555444444333333333
|
This gene is found within type III secretion operons in a limited range of species including Xanthomonas, Ralstonia and Burkholderia. |
| >PF04053 Coatomer_WDAD: Coatomer WD associated region ; InterPro: IPR006692 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment | Back alignment and domain information |
|---|
Probab=95.37 E-value=0.22 Score=46.42 Aligned_cols=129 Identities=16% Similarity=0.150 Sum_probs=75.0
Q ss_pred hhhcChhhHHHHHHHHHHhCCCC-hhHHHHHHHHHHHhCChhHHHHHHHHHHHHHhhhhcccchhhhHHHHHHhhhcccc
Q 012143 52 SREEKVSSLKTGLVHVARKMPKN-AHAHFLLGLMYQRLGQPLKAVSSYEKAEEILLRCEADIARPELLSLVQIHHAQCLL 130 (470)
Q Consensus 52 ~~~~~~~~A~~~~~~~l~~~p~~-~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 130 (470)
...++++.+.+..... ++-|.- ..-...++..+.++|.++.|+..-..--.. +.+
T Consensus 272 v~~~d~~~v~~~i~~~-~ll~~i~~~~~~~i~~fL~~~G~~e~AL~~~~D~~~r--------------------FeL--- 327 (443)
T PF04053_consen 272 VLRGDFEEVLRMIAAS-NLLPNIPKDQGQSIARFLEKKGYPELALQFVTDPDHR--------------------FEL--- 327 (443)
T ss_dssp HHTT-HHH-----HHH-HTGGG--HHHHHHHHHHHHHTT-HHHHHHHSS-HHHH--------------------HHH---
T ss_pred HHcCChhhhhhhhhhh-hhcccCChhHHHHHHHHHHHCCCHHHHHhhcCChHHH--------------------hHH---
Confidence 3456677765555411 112222 334566677777888888777765432111 111
Q ss_pred ccccCCCccccccCcccHHHHHHHHHHhhhcCccchHHHHHHHHHHHHcCChHHHHHHHHHHhhcCCCChHHHHHHHHHH
Q 012143 131 PESSGDNSLDKELEPEELEEILSKLKESMQSDTRQAVVWNTLGLILLKSGRLQSSISVLSSLLAVDPNNCDCIGNLGIAY 210 (470)
Q Consensus 131 ~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~la~~~ 210 (470)
.++.|+++.|.+..++. +++..|..+|...+.+|+++-|..+|+++- -+..|..+|
T Consensus 328 -----------Al~lg~L~~A~~~a~~~-----~~~~~W~~Lg~~AL~~g~~~lAe~c~~k~~--------d~~~L~lLy 383 (443)
T PF04053_consen 328 -----------ALQLGNLDIALEIAKEL-----DDPEKWKQLGDEALRQGNIELAEECYQKAK--------DFSGLLLLY 383 (443)
T ss_dssp -----------HHHCT-HHHHHHHCCCC-----STHHHHHHHHHHHHHTTBHHHHHHHHHHCT---------HHHHHHHH
T ss_pred -----------HHhcCCHHHHHHHHHhc-----CcHHHHHHHHHHHHHcCCHHHHHHHHHhhc--------CccccHHHH
Confidence 34677888888765443 467799999999999999999999998852 245666677
Q ss_pred HHcCCHHHHHHHHHHHHh
Q 012143 211 FQSGDMEQSAKCFQDLIL 228 (470)
Q Consensus 211 ~~~g~~~~A~~~~~~~l~ 228 (470)
.-.|+.+.=.+..+.+..
T Consensus 384 ~~~g~~~~L~kl~~~a~~ 401 (443)
T PF04053_consen 384 SSTGDREKLSKLAKIAEE 401 (443)
T ss_dssp HHCT-HHHHHHHHHHHHH
T ss_pred HHhCCHHHHHHHHHHHHH
Confidence 778887655555555443
|
This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the WD-associated region found in coatomer subunits alpha, beta and beta' subunits. The alpha-subunit (RET1P) of the coatomer complex in Saccharomyces cerevisiae (Baker's yeast), participates in membrane transport between the endoplasmic reticulum and Golgi apparatus. The protein contains six WD-40 repeat motifs in its N-terminal region []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006886 intracellular protein transport, 0016192 vesicle-mediated transport, 0030117 membrane coat; PDB: 3MKQ_B. |
| >PF13374 TPR_10: Tetratricopeptide repeat; PDB: 3CEQ_B 3EDT_H 3NF1_A | Back alignment and domain information |
|---|
Probab=95.30 E-value=0.044 Score=31.50 Aligned_cols=31 Identities=32% Similarity=0.217 Sum_probs=27.0
Q ss_pred hhHHHHHHHHHHHhCChhHHHHHHHHHHHHH
Q 012143 75 AHAHFLLGLMYQRLGQPLKAVSSYEKAEEIL 105 (470)
Q Consensus 75 ~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~ 105 (470)
..++..+|.+|..+|++++|+.++++++.+.
T Consensus 2 a~~~~~la~~~~~~g~~~~A~~~~~~al~~~ 32 (42)
T PF13374_consen 2 ASALNNLANAYRAQGRYEEALELLEEALEIR 32 (42)
T ss_dssp HHHHHHHHHHHHHCT-HHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhhhhcchhhHHHHHHHHHH
Confidence 3578899999999999999999999999873
|
|
| >KOG3364 consensus Membrane protein involved in organellar division [Cell wall/membrane/envelope biogenesis] | Back alignment and domain information |
|---|
Probab=95.26 E-value=0.46 Score=35.29 Aligned_cols=76 Identities=21% Similarity=0.321 Sum_probs=62.0
Q ss_pred hHHHHHHHHHHHHcC---ChHHHHHHHHHHhh-cCCC-ChHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCChHHHHHH
Q 012143 166 AVVWNTLGLILLKSG---RLQSSISVLSSLLA-VDPN-NCDCIGNLGIAYFQSGDMEQSAKCFQDLILKDQNHPAALINY 240 (470)
Q Consensus 166 ~~~~~~l~~~~~~~~---~~~~A~~~~~~a~~-~~~~-~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~l 240 (470)
....++++.++.... +..+.+.+++..++ -.|. ..+..+.++..+.+.++|+.++.+.+..++..|++..+....
T Consensus 32 ~~s~f~lAwaLV~S~~~~dv~~GI~iLe~l~~~~~~~~rRe~lyYLAvg~yRlkeY~~s~~yvd~ll~~e~~n~Qa~~Lk 111 (149)
T KOG3364|consen 32 KQSQFNLAWALVRSRDTEDVQEGIVILEDLLKSAHPERRRECLYYLAVGHYRLKEYSKSLRYVDALLETEPNNRQALELK 111 (149)
T ss_pred HHHHHHHHHHHHcccchHHHHHhHHHHHHHhhhcCcccchhhhhhhHHHHHHHhhHHHHHHHHHHHHhhCCCcHHHHHHH
Confidence 467788888887764 46778999999986 4453 356889999999999999999999999999999998876543
Q ss_pred H
Q 012143 241 A 241 (470)
Q Consensus 241 ~ 241 (470)
-
T Consensus 112 ~ 112 (149)
T KOG3364|consen 112 E 112 (149)
T ss_pred H
Confidence 3
|
|
| >KOG0529 consensus Protein geranylgeranyltransferase type II, alpha subunit [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=95.18 E-value=2.1 Score=38.60 Aligned_cols=141 Identities=16% Similarity=0.166 Sum_probs=102.3
Q ss_pred HHHHHHHHHHhhhcCccchHHHHHHHHHHHHcCC--hHHHHHHHHHHhhcCCCChHHHHHHHHHHHHc----CCHHHHHH
Q 012143 148 LEEILSKLKESMQSDTRQAVVWNTLGLILLKSGR--LQSSISVLSSLLAVDPNNCDCIGNLGIAYFQS----GDMEQSAK 221 (470)
Q Consensus 148 ~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~~~--~~~A~~~~~~a~~~~~~~~~~~~~la~~~~~~----g~~~~A~~ 221 (470)
+++-+.+...++..+|+...+|..+..++.+.+. +..=+...+++++.+|.+-.+|...=.+.... ....+=++
T Consensus 91 ld~eL~~~~~~L~~npksY~aW~hR~w~L~~~p~~~~~~EL~lcek~L~~D~RNfh~W~YRRfV~~~~~~~~~~~~~El~ 170 (421)
T KOG0529|consen 91 LDEELKYVESALKVNPKSYGAWHHRKWVLQKNPHSDWNTELQLCEKALKQDPRNFHAWHYRRFVVEQAERSRNLEKEELE 170 (421)
T ss_pred hHHHHHHHHHHHHhCchhHHHHHHHHHHHHhCCCchHHHHHHHHHHHHhcCcccccchHHHHHHHHHHhcccccchhHHH
Confidence 4777888899999999999999999999987764 57889999999999999887776555544432 23567788
Q ss_pred HHHHHHhhCCCChHHHHHHHHHHHhhhcccccccccchhhhhHHHhcCCHHHHHHHHHHHHhcCCCCHHHHHHHHH
Q 012143 222 CFQDLILKDQNHPAALINYAALLLCKYGSVLAGAGANTGEGACLDQASAVNVAKECLLAALKADPKAAHIWANLAN 297 (470)
Q Consensus 222 ~~~~~l~~~p~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~la~ 297 (470)
+..+++.-++.|..+|.....++........... .........-++....++-.+|++..+|+..-.
T Consensus 171 ftt~~I~~nfSNYsaWhyRs~lL~~l~~~~~~g~---------~~~~~~l~sEle~v~saiFTdp~DqS~WfY~rW 237 (421)
T KOG0529|consen 171 FTTKLINDNFSNYSAWHYRSLLLSTLHPKEADGN---------FMPKELLQSELEMVHSAIFTDPEDQSCWFYHRW 237 (421)
T ss_pred HHHHHHhccchhhhHHHHHHHHHHHhccccccCc---------cCCHHHHHHHHHHHHHHHhcCccccceeeehHH
Confidence 8899999899999999988877764322210000 000111334556677788889999988877433
|
|
| >KOG3807 consensus Predicted membrane protein ST7 (tumor suppressor in humans) [General function prediction only] | Back alignment and domain information |
|---|
Probab=95.00 E-value=2 Score=37.38 Aligned_cols=52 Identities=12% Similarity=0.046 Sum_probs=39.2
Q ss_pred hhhhhhhHHHHHHHHHHHHhcCCCCcchhhhcccchhhhhcChhhHHHHHHHHHHh
Q 012143 15 INKLGKCRSRISSKMDSALEFGVDADGDQSGLGTSSSSREEKVSSLKTGLVHVARK 70 (470)
Q Consensus 15 ~~~~g~~~~a~~~~~~~~l~~~p~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~ 70 (470)
..+..+..+.+ ..-..+|+++|+-+.++..++.- ...-+.+|++.|+++++.
T Consensus 194 AWRERnp~~RI-~~A~~ALeIN~eCA~AyvLLAEE---Ea~Ti~~AE~l~k~ALka 245 (556)
T KOG3807|consen 194 AWRERNPPARI-KAAYQALEINNECATAYVLLAEE---EATTIVDAERLFKQALKA 245 (556)
T ss_pred HHHhcCcHHHH-HHHHHHHhcCchhhhHHHhhhhh---hhhhHHHHHHHHHHHHHH
Confidence 33445667777 78889999999999999888755 344567888888888764
|
|
| >KOG1839 consensus Uncharacterized protein CLU1/cluA/TIF31 involved in mitochondrial morphology/distribution, also found associated with eIF-3 [General function prediction only] | Back alignment and domain information |
|---|
Probab=94.98 E-value=0.24 Score=50.96 Aligned_cols=154 Identities=19% Similarity=0.186 Sum_probs=114.0
Q ss_pred CcccHHHHHH------HHH-HhhhcCccchHHHHHHHHHHHHcCChHHHHHHHHHHhhc--------CCCChHHHHHHHH
Q 012143 144 EPEELEEILS------KLK-ESMQSDTRQAVVWNTLGLILLKSGRLQSSISVLSSLLAV--------DPNNCDCIGNLGI 208 (470)
Q Consensus 144 ~~~~~~~A~~------~~~-~~~~~~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~--------~~~~~~~~~~la~ 208 (470)
..|.+.++.+ .+. ..-...|.....+..++.++...|++++|+..-.++.-+ .|+....+.+++.
T Consensus 944 ~e~~~~~~~~~~~slnl~~~v~~~~h~~~~~~~~~La~l~~~~~d~~~Ai~~~~ka~ii~eR~~g~ds~~t~~~y~nlal 1023 (1236)
T KOG1839|consen 944 LEDGFSEAYELPESLNLLNNVMGVLHPEVASKYRSLAKLSNRLGDNQEAIAQQRKACIISERVLGKDSPNTKLAYGNLAL 1023 (1236)
T ss_pred cccchhhhhhhhhhhhHHHHhhhhcchhHHHHHHHHHHHHhhhcchHHHHHhcccceeeechhccCCCHHHHHHhhHHHH
Confidence 4455555555 665 334467888999999999999999999999998887654 3455668888998
Q ss_pred HHHHcCCHHHHHHHHHHHHhh--------CCCChHHHHHHHHHHHhhhcccccccccchhhhhHHHhcCCHHHHHHHHHH
Q 012143 209 AYFQSGDMEQSAKCFQDLILK--------DQNHPAALINYAALLLCKYGSVLAGAGANTGEGACLDQASAVNVAKECLLA 280 (470)
Q Consensus 209 ~~~~~g~~~~A~~~~~~~l~~--------~p~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~ 280 (470)
..+..++...|...+.++..+ .|.-.....++..++. ..++++.|+.+.+.
T Consensus 1024 ~~f~~~~~~~al~~~~ra~~l~~Ls~ge~hP~~a~~~~nle~l~~---------------------~v~e~d~al~~le~ 1082 (1236)
T KOG1839|consen 1024 YEFAVKNLSGALKSLNRALKLKLLSSGEDHPPTALSFINLELLLL---------------------GVEEADTALRYLES 1082 (1236)
T ss_pred HHHhccCccchhhhHHHHHHhhccccCCCCCchhhhhhHHHHHHh---------------------hHHHHHHHHHHHHH
Confidence 889999999999999988754 2333333445555544 57889999999999
Q ss_pred HHhcCCC--------CHHHHHHHHHHHHHcCChhHHHHHHHHHHhc
Q 012143 281 ALKADPK--------AAHIWANLANAYYLTGDHRSSGKCLEKAAKL 318 (470)
Q Consensus 281 ~~~~~p~--------~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~ 318 (470)
+...... ....+..+++.+...+++..|....+....+
T Consensus 1083 A~a~~~~v~g~~~l~~~~~~~~~a~l~~s~~dfr~al~~ek~t~~i 1128 (1236)
T KOG1839|consen 1083 ALAKNKKVLGPKELETALSYHALARLFESMKDFRNALEHEKVTYGI 1128 (1236)
T ss_pred HHHHHhhhcCccchhhhhHHHHHHHHHhhhHHHHHHHHHHhhHHHH
Confidence 9875322 4556777888888888888887777766543
|
|
| >PF12862 Apc5: Anaphase-promoting complex subunit 5 | Back alignment and domain information |
|---|
Probab=94.79 E-value=0.12 Score=36.35 Aligned_cols=57 Identities=16% Similarity=0.053 Sum_probs=40.5
Q ss_pred HHHhccHHHHHHHHHHHHhcCCC---------cHHHHHHHHHHHHHcCChHHHHHHHHHHHHhhcc
Q 012143 411 LDQASAVNVAKECLLAALKADPK---------AAHIWANLANAYYLTGDHRSSGKCLEKVLMVYCS 467 (470)
Q Consensus 411 ~~~~~~~~~A~~~~~~al~~~p~---------~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~ 467 (470)
..+.++|.+|++.+.+.+..... ...+..++|.++...|++++|+..+++++++...
T Consensus 8 ~~~~~dy~~A~d~L~~~fD~~~~~~~~~~~~~~~~all~lA~~~~~~G~~~~A~~~l~eAi~~Are 73 (94)
T PF12862_consen 8 ALRSGDYSEALDALHRYFDYAKQSNNSSSNSGLAYALLNLAELHRRFGHYEEALQALEEAIRLARE 73 (94)
T ss_pred HHHcCCHHHHHHHHHHHHHHHhhcccchhhHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHH
Confidence 34567777777766666654221 1356677888888889999999988888887754
|
|
| >COG3629 DnrI DNA-binding transcriptional activator of the SARP family [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=94.71 E-value=0.41 Score=41.11 Aligned_cols=77 Identities=14% Similarity=0.147 Sum_probs=66.2
Q ss_pred HHHHHHHhcchhhhhHhhHHHHHHHhccHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHcCChHHHHHHHHHHHHhh
Q 012143 389 FETEENELSKMEECAGAGESAFLDQASAVNVAKECLLAALKADPKAAHIWANLANAYYLTGDHRSSGKCLEKVLMVY 465 (470)
Q Consensus 389 ~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~ 465 (470)
+......+......++..++..+...++++.++..+++.+..+|-+..+|..+-..|...|+...|+..|++.-++.
T Consensus 141 V~~~R~~l~e~~~~~l~~lae~~~~~~~~~~~~~~l~~Li~~dp~~E~~~~~lm~~y~~~g~~~~ai~~y~~l~~~~ 217 (280)
T COG3629 141 VLEQRRALEELFIKALTKLAEALIACGRADAVIEHLERLIELDPYDEPAYLRLMEAYLVNGRQSAAIRAYRQLKKTL 217 (280)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHhcCccchHHHHHHHHHHHHcCCchHHHHHHHHHHHHh
Confidence 33444455555566777888899999999999999999999999999999999999999999999999999987754
|
|
| >KOG1310 consensus WD40 repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=94.66 E-value=0.16 Score=46.69 Aligned_cols=93 Identities=14% Similarity=0.085 Sum_probs=81.2
Q ss_pred cCcccHHHHHHHHHHhhhcCccchHHHHHHHHHHHHc---CChHHHHHHHHHHhhcCCCChHHHHHHHHHHHHcCCHHHH
Q 012143 143 LEPEELEEILSKLKESMQSDTRQAVVWNTLGLILLKS---GRLQSSISVLSSLLAVDPNNCDCIGNLGIAYFQSGDMEQS 219 (470)
Q Consensus 143 ~~~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~---~~~~~A~~~~~~a~~~~~~~~~~~~~la~~~~~~g~~~~A 219 (470)
+-.+....++..|.+++...|.....+.+.+.++++. |+.-.|+.....+++++|....+++.|+.++..++++.+|
T Consensus 385 ly~~~~~~~i~~~s~a~q~~~~~~~~l~nraa~lmkRkW~~d~~~AlrDch~Alrln~s~~kah~~la~aL~el~r~~ea 464 (758)
T KOG1310|consen 385 LYESIVSGAISHYSRAIQYVPDAIYLLENRAAALMKRKWRGDSYLALRDCHVALRLNPSIQKAHFRLARALNELTRYLEA 464 (758)
T ss_pred hhhHHHHHHHHHHHHHhhhccchhHHHHhHHHHHHhhhccccHHHHHHhHHhhccCChHHHHHHHHHHHHHHHHhhHHHh
Confidence 3456678899999999999999999999999998875 5666788888899999999999999999999999999999
Q ss_pred HHHHHHHHhhCCCChH
Q 012143 220 AKCFQDLILKDQNHPA 235 (470)
Q Consensus 220 ~~~~~~~l~~~p~~~~ 235 (470)
+++...+....|.+..
T Consensus 465 l~~~~alq~~~Ptd~a 480 (758)
T KOG1310|consen 465 LSCHWALQMSFPTDVA 480 (758)
T ss_pred hhhHHHHhhcCchhhh
Confidence 9999988888885543
|
|
| >KOG1310 consensus WD40 repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=94.61 E-value=0.14 Score=47.14 Aligned_cols=93 Identities=16% Similarity=0.013 Sum_probs=72.6
Q ss_pred HcCCHHHHHHHHHHHHhhCCCChHHHHHHHHHHHhhhcccccccccchhhhhHHHhcCCHHHHHHHHHHHHhcCCCCHHH
Q 012143 212 QSGDMEQSAKCFQDLILKDQNHPAALINYAALLLCKYGSVLAGAGANTGEGACLDQASAVNVAKECLLAALKADPKAAHI 291 (470)
Q Consensus 212 ~~g~~~~A~~~~~~~l~~~p~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~ 291 (470)
..+....|+..|.+++...|.....+.+.+.++..+. -.|+.-.|+.-...+++++|....+
T Consensus 386 y~~~~~~~i~~~s~a~q~~~~~~~~l~nraa~lmkRk------------------W~~d~~~AlrDch~Alrln~s~~ka 447 (758)
T KOG1310|consen 386 YESIVSGAISHYSRAIQYVPDAIYLLENRAAALMKRK------------------WRGDSYLALRDCHVALRLNPSIQKA 447 (758)
T ss_pred hhHHHHHHHHHHHHHhhhccchhHHHHhHHHHHHhhh------------------ccccHHHHHHhHHhhccCChHHHHH
Confidence 3445777888888888888888888877777776431 2456667888888888888888889
Q ss_pred HHHHHHHHHHcCChhHHHHHHHHHHhcCCCc
Q 012143 292 WANLANAYYLTGDHRSSGKCLEKAAKLEPNC 322 (470)
Q Consensus 292 ~~~la~~~~~~g~~~~A~~~~~~a~~~~p~~ 322 (470)
|+.|+.++..++++.+|+.+...+....|.+
T Consensus 448 h~~la~aL~el~r~~eal~~~~alq~~~Ptd 478 (758)
T KOG1310|consen 448 HFRLARALNELTRYLEALSCHWALQMSFPTD 478 (758)
T ss_pred HHHHHHHHHHHhhHHHhhhhHHHHhhcCchh
Confidence 9999999999999999988887777777754
|
|
| >PF10602 RPN7: 26S proteasome subunit RPN7; InterPro: IPR019585 This entry represents the regulatory subunit RPN7 (known as the non-ATPase regulatory subunit 6 in higher eukaryotes) of the 26S proteasome | Back alignment and domain information |
|---|
Probab=94.49 E-value=1.1 Score=36.08 Aligned_cols=95 Identities=7% Similarity=-0.113 Sum_probs=71.0
Q ss_pred cHHHHHHHHHHHhccccHHHHHHHHHHHhcch-----hhhhHhhHHHHHHHhccHHHHHHHHHHHHhcCC--CcHH----
Q 012143 368 PPIAWAGFAAVQKTHHEVAAAFETEENELSKM-----EECAGAGESAFLDQASAVNVAKECLLAALKADP--KAAH---- 436 (470)
Q Consensus 368 ~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-----~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~p--~~~~---- 436 (470)
....+..+|..|.+.|+.+.|++.|.+..+.. ..+.++.+..+....+++.....+..++-..-. .+.+
T Consensus 35 ir~~~~~l~~~~~~~Gd~~~A~k~y~~~~~~~~~~~~~id~~l~~irv~i~~~d~~~v~~~i~ka~~~~~~~~d~~~~nr 114 (177)
T PF10602_consen 35 IRMALEDLADHYCKIGDLEEALKAYSRARDYCTSPGHKIDMCLNVIRVAIFFGDWSHVEKYIEKAESLIEKGGDWERRNR 114 (177)
T ss_pred HHHHHHHHHHHHHHhhhHHHHHHHHHHHhhhcCCHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHhccchHHHHHH
Confidence 34678899999999999999999999966632 225567888888889999999999998876532 3332
Q ss_pred HHHHHHHHHHHcCChHHHHHHHHHHH
Q 012143 437 IWANLANAYYLTGDHRSSGKCLEKVL 462 (470)
Q Consensus 437 ~~~~la~~~~~~g~~~~A~~~~~~al 462 (470)
....-|..+...++|..|...|-.+.
T Consensus 115 lk~~~gL~~l~~r~f~~AA~~fl~~~ 140 (177)
T PF10602_consen 115 LKVYEGLANLAQRDFKEAAELFLDSL 140 (177)
T ss_pred HHHHHHHHHHHhchHHHHHHHHHccC
Confidence 23445666778888888888876554
|
This entry also matches the evolutionarily related subunit 1 of the COP9 signalosome complex (CSN) from Arabidopsis []. The 26S proteasome plays a major role in ATP-dependent degradation of ubiquitinated proteins. Substrate specificity is conferred by the regulatory particle (RP), which can dissociate into stable lid and base subcomplexes. The regulatory subunit RPN7 is one of the lid subunits of the 26S proteasome and has been shown in Saccharomyces cerevisiae (Baker's yeast) to be required for structural integrity []. The COP9 signalosome is a conserved protein complex composed of eight subunits, where Individual subunits of the complex have been linked to various signal transduction pathways leading to gene expression and cell cycle control []. The overall organisation and the amino acid sequences of the COP9 signalosome subunits resemble the lid subcomplex of the 19 S regulatory particle for the 26 S proteasome []. COP9 subunit 1 (CSN1 or GPS1) of the COP9 complex is an essential subunit of the complex with regard to both structural integrity and functionality. The N-terminal region of subunit 1 (CSN1-N) can inhibit c-fos expression from either a transfected template or a chromosomal transgene (fos-lacZ), and may contain the activity domain that confers most of the repression functions of CSN1. The C-terminal region of subunit 1 (CSN1-C) allows integration of the protein into the COP9 signalosome. |
| >COG2912 Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=94.48 E-value=0.34 Score=41.00 Aligned_cols=76 Identities=21% Similarity=0.259 Sum_probs=66.6
Q ss_pred HHHHHHHHHHHcCChHHHHHHHHHHhhcCCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCChHHHHHHHHH
Q 012143 168 VWNTLGLILLKSGRLQSSISVLSSLLAVDPNNCDCIGNLGIAYFQSGDMEQSAKCFQDLILKDQNHPAALINYAAL 243 (470)
Q Consensus 168 ~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~l~~~ 243 (470)
...++=..+...++++.|..+.++.+.++|.++.-+...|.+|.++|.+.-|++.++..++..|+.+.+-......
T Consensus 183 ll~~lk~~~~~e~~~~~al~~~~r~l~l~P~dp~eirDrGliY~ql~c~~vAl~dl~~~~~~~P~~~~a~~ir~~l 258 (269)
T COG2912 183 LLRNLKAALLRELQWELALRVAERLLDLNPEDPYEIRDRGLIYAQLGCYHVALEDLSYFVEHCPDDPIAEMIRAQL 258 (269)
T ss_pred HHHHHHHHHHHhhchHHHHHHHHHHHhhCCCChhhccCcHHHHHhcCCchhhHHHHHHHHHhCCCchHHHHHHHHH
Confidence 3445566788899999999999999999999999999999999999999999999999999999998776544433
|
|
| >KOG3783 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=94.41 E-value=4.4 Score=37.98 Aligned_cols=254 Identities=13% Similarity=0.024 Sum_probs=142.4
Q ss_pred HHHHHHHHHhhhcCccchHHHHHHHHHHHHcCChHHHHHHHHHHhhcCCCC----hHHHHHHHHHHHHcCCHHHHHHHHH
Q 012143 149 EEILSKLKESMQSDTRQAVVWNTLGLILLKSGRLQSSISVLSSLLAVDPNN----CDCIGNLGIAYFQSGDMEQSAKCFQ 224 (470)
Q Consensus 149 ~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~----~~~~~~la~~~~~~g~~~~A~~~~~ 224 (470)
+...+.+.......|+++...+..+..+...|+.+.|+..+...+. +.- .-.++.+|+++.-+.+|..|...+.
T Consensus 250 ~~~~~~Ll~~~~~~p~ga~wll~~ar~l~~~g~~eaa~~~~~~~v~--~~~kQ~~~l~~fE~aw~~v~~~~~~~aad~~~ 327 (546)
T KOG3783|consen 250 EECEKALKKYRKRYPKGALWLLMEARILSIKGNSEAAIDMESLSIP--IRMKQVKSLMVFERAWLSVGQHQYSRAADSFD 327 (546)
T ss_pred HHHHHHhHHHHHhCCCCccHHHHHHHHHHHcccHHHHHHHHHhccc--HHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHH
Confidence 5555666666777899999999999999999998888999888877 221 3367889999999999999999999
Q ss_pred HHHhhCCCChHHHHHHH-HHHHhhhcccccccccchhhhhHHHhcCCHHHHHHHHHHH---HhcCCCCHHHHHHHHHHHH
Q 012143 225 DLILKDQNHPAALINYA-ALLLCKYGSVLAGAGANTGEGACLDQASAVNVAKECLLAA---LKADPKAAHIWANLANAYY 300 (470)
Q Consensus 225 ~~l~~~p~~~~~~~~l~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~---~~~~p~~~~~~~~la~~~~ 300 (470)
.....+.-....+..++ -++... -..+....|+-++|-.+++.. +...|.+..+-..+
T Consensus 328 ~L~desdWS~a~Y~Yfa~cc~l~~-------------~~~~q~~~~ne~~a~~~~k~~~~l~~~a~K~~P~E~f~----- 389 (546)
T KOG3783|consen 328 LLRDESDWSHAFYTYFAGCCLLQN-------------WEVNQGAGGNEEKAQLYFKVGEELLANAGKNLPLEKFI----- 389 (546)
T ss_pred HHHhhhhhhHHHHHHHHHHHHhcc-------------HHHHHhcccchhHHHHHHHHHHHHHHhccccCchhHHH-----
Confidence 98766543333333333 222210 011111233444444444332 22233222211111
Q ss_pred HcCChhHHHHHHHHHHhcCCCcccH--HHHHHHHHHHHhhhccCchHHhhhhHHHHHHHhhcCCCCCCC-cHHHHHHHHH
Q 012143 301 LTGDHRSSGKCLEKAAKLEPNCMST--RYAVAVSRIKDAERSQEPTEQLSWAGNEMASILREGDPVQIE-PPIAWAGFAA 377 (470)
Q Consensus 301 ~~g~~~~A~~~~~~a~~~~p~~~~~--~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~l~~ 377 (470)
..++.++-.+.- .++....+ ++.++...-+-......... .+..........+++ ...-++.+|.
T Consensus 390 ----~RKverf~~~~~-~~~~~~la~P~~El~Y~Wngf~~~s~~~l~-------k~~~~~~~~~~~d~Dd~~lk~lL~g~ 457 (546)
T KOG3783|consen 390 ----VRKVERFVKRGP-LNASILLASPYYELAYFWNGFSRMSKNELE-------KMRAELENPKIDDSDDEGLKYLLKGV 457 (546)
T ss_pred ----HHHHHHHhcccc-ccccccccchHHHHHHHHhhcccCChhhHH-------HHHHHHhccCCCCchHHHHHHHHHHH
Confidence 111111111110 11111111 12221111110000000000 111111111111222 2345678899
Q ss_pred HHhccccHHHHHHHHHHHhc---------chhhhhHhhHHHHHHHhcc-HHHHHHHHHHHHhcCCCc
Q 012143 378 VQKTHHEVAAAFETEENELS---------KMEECAGAGESAFLDQASA-VNVAKECLLAALKADPKA 434 (470)
Q Consensus 378 ~~~~~~~~~~A~~~~~~~~~---------~~~~~~~~~l~~~~~~~~~-~~~A~~~~~~al~~~p~~ 434 (470)
++...|+...|...|...++ -..+.++|.+|..+...+. ..++..++.+|-+...++
T Consensus 458 ~lR~Lg~~~~a~~~f~i~~~~e~~~~~d~w~~PfA~YElA~l~~~~~g~~~e~~~~L~kAr~~~~dY 524 (546)
T KOG3783|consen 458 ILRNLGDSEVAPKCFKIQVEKESKRTEDLWAVPFALYELALLYWDLGGGLKEARALLLKAREYASDY 524 (546)
T ss_pred HHHHcCCHHHHHHHHHHHHHHHHhhccccccccHHHHHHHHHHHhcccChHHHHHHHHHHHhhcccc
Confidence 99999999999999887653 2234678899999999988 999999999998876543
|
|
| >PF07721 TPR_4: Tetratricopeptide repeat; InterPro: IPR011717 This entry includes tetratricopeptide-like repeats not detected by the IPR001440 from INTERPRO, IPR013105 from INTERPRO and IPR011716 from INTERPRO models | Back alignment and domain information |
|---|
Probab=94.37 E-value=0.061 Score=27.15 Aligned_cols=25 Identities=20% Similarity=0.181 Sum_probs=21.6
Q ss_pred hhHHHHHHHHHHHhCChhHHHHHHH
Q 012143 75 AHAHFLLGLMYQRLGQPLKAVSSYE 99 (470)
Q Consensus 75 ~~~~~~l~~~~~~~g~~~~A~~~~~ 99 (470)
+.+.+.+|.++...|++++|...++
T Consensus 1 ~~a~~~la~~~~~~G~~~eA~~~l~ 25 (26)
T PF07721_consen 1 PRARLALARALLAQGDPDEAERLLR 25 (26)
T ss_pred CHHHHHHHHHHHHcCCHHHHHHHHh
Confidence 3567889999999999999998876
|
The tetratricopeptide repeat (TPR) motif is a protein-protein interaction module found in multiple copies in a number of functionally different proteins that facilitates specific interactions with a partner protein(s) [].; GO: 0042802 identical protein binding |
| >COG5191 Uncharacterized conserved protein, contains HAT (Half-A-TPR) repeat [General function prediction only] | Back alignment and domain information |
|---|
Probab=94.36 E-value=0.13 Score=43.84 Aligned_cols=87 Identities=16% Similarity=0.172 Sum_probs=72.0
Q ss_pred HHHHHHhhCCCChHHHHHHHHHHHhhhcccccccccchhhhhHHHhcCCHHHHHHHHHHHHhcCCCCHHHHHH-HHHHHH
Q 012143 222 CFQDLILKDQNHPAALINYAALLLCKYGSVLAGAGANTGEGACLDQASAVNVAKECLLAALKADPKAAHIWAN-LANAYY 300 (470)
Q Consensus 222 ~~~~~l~~~p~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~-la~~~~ 300 (470)
.|.++....|+++..|...+.... +.|.+.+--..|.+++..+|.+++.|.. .+.-+.
T Consensus 95 ~~~R~tnkff~D~k~w~~y~~Y~~---------------------k~k~y~~~~nI~~~~l~khP~nvdlWI~~c~~e~~ 153 (435)
T COG5191 95 ELYRSTNKFFNDPKIWSQYAAYVI---------------------KKKMYGEMKNIFAECLTKHPLNVDLWIYCCAFELF 153 (435)
T ss_pred eeehhhhcCCCCcHHHHHHHHHHH---------------------HHHHHHHHHHHHHHHHhcCCCCceeeeeeccchhh
Confidence 344555567888888877766555 5678888899999999999999999988 566788
Q ss_pred HcCChhHHHHHHHHHHhcCCCcccHHHHH
Q 012143 301 LTGDHRSSGKCLEKAAKLEPNCMSTRYAV 329 (470)
Q Consensus 301 ~~g~~~~A~~~~~~a~~~~p~~~~~~~~l 329 (470)
..++++.+...|.++++.+|+++..|...
T Consensus 154 ~~ani~s~Ra~f~~glR~N~~~p~iw~ey 182 (435)
T COG5191 154 EIANIESSRAMFLKGLRMNSRSPRIWIEY 182 (435)
T ss_pred hhccHHHHHHHHHhhhccCCCCchHHHHH
Confidence 89999999999999999999999887643
|
|
| >PF10516 SHNi-TPR: SHNi-TPR; InterPro: IPR019544 The tetratrico peptide repeat region (TPR) is a structural motif present in a wide range of proteins [, , ] | Back alignment and domain information |
|---|
Probab=94.35 E-value=0.093 Score=29.35 Aligned_cols=31 Identities=13% Similarity=0.094 Sum_probs=25.2
Q ss_pred HHHHHHHHHHHHcCChHHHHHHHHHHHHhhc
Q 012143 436 HIWANLANAYYLTGDHRSSGKCLEKVLMVYC 466 (470)
Q Consensus 436 ~~~~~la~~~~~~g~~~~A~~~~~~al~~~~ 466 (470)
+++..||.+-...++|++|+..|++++++..
T Consensus 2 dv~~~Lgeisle~e~f~qA~~D~~~aL~i~~ 32 (38)
T PF10516_consen 2 DVYDLLGEISLENENFEQAIEDYEKALEIQE 32 (38)
T ss_pred cHHHHHHHHHHHhccHHHHHHHHHHHHHHHH
Confidence 4677888888888888888888888888753
|
It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. The X-ray structure of a domain containing three TPRs from protein phosphatase 5 revealed that TPR adopts a helix-turn-helix arrangement, with adjacent TPR motifs packing in a parallel fashion, resulting in a spiral of repeating anti-parallel alpha-helices []. The two helices are denoted helix A and helix B. The packing angle between helix A and helix B is ~24 degrees within a single TPR and generates a right-handed superhelical shape. Helix A interacts with helix B and with helix A' of the next TPR. Two protein surfaces are generated: the inner concave surface is contributed to mainly by residue on helices A, and the other surface presents residues from both helices A and B. This entry represents SHNi-TPR (Sim3-Hif1-NASP interrupted TPR), a sequence that is an interrupted form of TPR repeat []. |
| >PF07721 TPR_4: Tetratricopeptide repeat; InterPro: IPR011717 This entry includes tetratricopeptide-like repeats not detected by the IPR001440 from INTERPRO, IPR013105 from INTERPRO and IPR011716 from INTERPRO models | Back alignment and domain information |
|---|
Probab=94.28 E-value=0.07 Score=26.94 Aligned_cols=24 Identities=25% Similarity=0.288 Sum_probs=17.7
Q ss_pred HHHHHHHHHHHHcCChHHHHHHHH
Q 012143 436 HIWANLANAYYLTGDHRSSGKCLE 459 (470)
Q Consensus 436 ~~~~~la~~~~~~g~~~~A~~~~~ 459 (470)
.+.+.+|.++...|++++|...++
T Consensus 2 ~a~~~la~~~~~~G~~~eA~~~l~ 25 (26)
T PF07721_consen 2 RARLALARALLAQGDPDEAERLLR 25 (26)
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHh
Confidence 456777888888888888877665
|
The tetratricopeptide repeat (TPR) motif is a protein-protein interaction module found in multiple copies in a number of functionally different proteins that facilitates specific interactions with a partner protein(s) [].; GO: 0042802 identical protein binding |
| >PRK15180 Vi polysaccharide biosynthesis protein TviD; Provisional | Back alignment and domain information |
|---|
Probab=94.23 E-value=4.5 Score=37.32 Aligned_cols=126 Identities=13% Similarity=0.105 Sum_probs=97.2
Q ss_pred hhhhcChhhHHHHHHHHHHhCCCChhHHHHHHHHHHHhCChhHHHHHHHHHHHHHhhhhcccchhhhHHHHHHhhhcccc
Q 012143 51 SSREEKVSSLKTGLVHVARKMPKNAHAHFLLGLMYQRLGQPLKAVSSYEKAEEILLRCEADIARPELLSLVQIHHAQCLL 130 (470)
Q Consensus 51 ~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 130 (470)
....|++-.|.+.+..++...|..|......+.+....|+|+.|...+..+-...... +... .+.
T Consensus 299 ~~~~gd~~aas~~~~~~lr~~~~~p~~i~l~~~i~~~lg~ye~~~~~~s~~~~~~~s~-------~~~~--~~~------ 363 (831)
T PRK15180 299 QLADGDIIAASQQLFAALRNQQQDPVLIQLRSVIFSHLGYYEQAYQDISDVEKIIGTT-------DSTL--RCR------ 363 (831)
T ss_pred HhhccCHHHHHHHHHHHHHhCCCCchhhHHHHHHHHHhhhHHHHHHHhhchhhhhcCC-------chHH--HHH------
Confidence 4567899999999999999999999999999999999999999988877655432111 1110 010
Q ss_pred ccccCCCccccccCcccHHHHHHHHHHhhhcCccchHHHHHHHHHHHHcCChHHHHHHHHHHhhcCCCC
Q 012143 131 PESSGDNSLDKELEPEELEEILSKLKESMQSDTRQAVVWNTLGLILLKSGRLQSSISVLSSLLAVDPNN 199 (470)
Q Consensus 131 ~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~ 199 (470)
.......|++++|.....-++...-.++++...-+-.....|-++++..++++.+.++|..
T Consensus 364 --------~r~~~~l~r~~~a~s~a~~~l~~eie~~ei~~iaa~sa~~l~~~d~~~~~wk~~~~~~~~~ 424 (831)
T PRK15180 364 --------LRSLHGLARWREALSTAEMMLSNEIEDEEVLTVAAGSADALQLFDKSYHYWKRVLLLNPET 424 (831)
T ss_pred --------HHhhhchhhHHHHHHHHHHHhccccCChhheeeecccHHHHhHHHHHHHHHHHHhccCChh
Confidence 0113466888999999999988887888877777777778889999999999999987753
|
|
| >PRK13184 pknD serine/threonine-protein kinase; Reviewed | Back alignment and domain information |
|---|
Probab=94.02 E-value=8.6 Score=39.77 Aligned_cols=96 Identities=17% Similarity=0.136 Sum_probs=78.2
Q ss_pred cccCcccHHHHHHHHHHhhhcCccch---HHHHHHHHHHHHc----C---ChHHHHHHHHHHhhcCCCChHHHHHHHHHH
Q 012143 141 KELEPEELEEILSKLKESMQSDTRQA---VVWNTLGLILLKS----G---RLQSSISVLSSLLAVDPNNCDCIGNLGIAY 210 (470)
Q Consensus 141 ~~~~~~~~~~A~~~~~~~~~~~p~~~---~~~~~l~~~~~~~----~---~~~~A~~~~~~a~~~~~~~~~~~~~la~~~ 210 (470)
..+..+.|++|+..|++.-...|... ++.+..|.....+ | .+++|+..|++.- -.|.-|--|...|.+|
T Consensus 484 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~ 562 (932)
T PRK13184 484 AFLAEKLYDQALIFYRRIRESFPGRKEGYEAQFRLGITLLEKASEQGDPRDFTQALSEFSYLH-GGVGAPLEYLGKALVY 562 (932)
T ss_pred HHHhhHHHHHHHHHHHHHhhcCCCcccchHHHHHhhHHHHHHHHhcCChHHHHHHHHHHHHhc-CCCCCchHHHhHHHHH
Confidence 46678899999999999999998764 5777777776653 3 4777888887743 3566777889999999
Q ss_pred HHcCCHHHHHHHHHHHHhhCCCChHHH
Q 012143 211 FQSGDMEQSAKCFQDLILKDQNHPAAL 237 (470)
Q Consensus 211 ~~~g~~~~A~~~~~~~l~~~p~~~~~~ 237 (470)
.++|++++-+++|.-+++..|.+|..-
T Consensus 563 ~~~~~~~~~~~~~~~~~~~~~~~~~~~ 589 (932)
T PRK13184 563 QRLGEYNEEIKSLLLALKRYSQHPEIS 589 (932)
T ss_pred HHhhhHHHHHHHHHHHHHhcCCCCccH
Confidence 999999999999999999999888653
|
|
| >PRK13184 pknD serine/threonine-protein kinase; Reviewed | Back alignment and domain information |
|---|
Probab=93.98 E-value=8.7 Score=39.72 Aligned_cols=220 Identities=9% Similarity=-0.014 Sum_probs=120.2
Q ss_pred HHHHHHHHHhCChhHHHHHHHHHHHHHhhhhcccchhhhHHHHHHhhhccccccccCCCccccccCcccHHHHHHHHHHh
Q 012143 79 FLLGLMYQRLGQPLKAVSSYEKAEEILLRCEADIARPELLSLVQIHHAQCLLPESSGDNSLDKELEPEELEEILSKLKES 158 (470)
Q Consensus 79 ~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~ 158 (470)
......+.....|+.|+..|++.....|..... -++.+..|..+...... .-....+++|+..|++.
T Consensus 479 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---------~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~ 545 (932)
T PRK13184 479 LAVPDAFLAEKLYDQALIFYRRIRESFPGRKEG---------YEAQFRLGITLLEKASE----QGDPRDFTQALSEFSYL 545 (932)
T ss_pred ccCcHHHHhhHHHHHHHHHHHHHhhcCCCcccc---------hHHHHHhhHHHHHHHHh----cCChHHHHHHHHHHHHh
Confidence 345566777888999999999998877654321 12223333333222221 11224688899988876
Q ss_pred hhcCccchHHHHHHHHHHHHcCChHHHHHHHHHHhhcCCCChHHHHHHHHHHHHc-----CCHHHHHHHHHHHHhhCCCC
Q 012143 159 MQSDTRQAVVWNTLGLILLKSGRLQSSISVLSSLLAVDPNNCDCIGNLGIAYFQS-----GDMEQSAKCFQDLILKDQNH 233 (470)
Q Consensus 159 ~~~~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~la~~~~~~-----g~~~~A~~~~~~~l~~~p~~ 233 (470)
.. .|.-|--|...|.+|.++|++++-+++|.-+++..|..|..-...-.+-.++ .+-..|....--++..-|..
T Consensus 546 ~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 624 (932)
T PRK13184 546 HG-GVGAPLEYLGKALVYQRLGEYNEEIKSLLLALKRYSQHPEISRLRDHLVYRLHESLYKHRREALVFMLLALWIAPEK 624 (932)
T ss_pred cC-CCCCchHHHhHHHHHHHhhhHHHHHHHHHHHHHhcCCCCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCccc
Confidence 53 5666778889999999999999999999999999998876433222222211 12234444444455555544
Q ss_pred hHHHHH--HHHHHHhhhccccc--------ccccchhhhhHHHhcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcC
Q 012143 234 PAALIN--YAALLLCKYGSVLA--------GAGANTGEGACLDQASAVNVAKECLLAALKADPKAAHIWANLANAYYLTG 303 (470)
Q Consensus 234 ~~~~~~--l~~~~~~~~~~~~~--------~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~la~~~~~~g 303 (470)
...... +-..+....+.... .....-..-.+-.-.|..---.+.++++....| ..+..+.-.+...+|
T Consensus 625 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~ 702 (932)
T PRK13184 625 ISSREEEKFLEILYHKQQATLFCQLDKTPLQFRSSKMELFLSFWSGFTPFLPELFQRAWDLRD--YRALADIFYVACDLG 702 (932)
T ss_pred ccchHHHHHHHHHHhhccCCceeeccCchhhhhhhhHHHHHHHHhcCchhhHHHHHHHhhccc--HHHHHHHHHHHHHhc
Confidence 332211 11111100000000 000000000111223444444556666666544 366666666777888
Q ss_pred ChhHHHHHHHH
Q 012143 304 DHRSSGKCLEK 314 (470)
Q Consensus 304 ~~~~A~~~~~~ 314 (470)
.++-+......
T Consensus 703 ~~~~~~~~~~~ 713 (932)
T PRK13184 703 NWEFFSQFSDI 713 (932)
T ss_pred cHHHHHHHHHH
Confidence 88766554443
|
|
| >PF10516 SHNi-TPR: SHNi-TPR; InterPro: IPR019544 The tetratrico peptide repeat region (TPR) is a structural motif present in a wide range of proteins [, , ] | Back alignment and domain information |
|---|
Probab=93.74 E-value=0.18 Score=28.23 Aligned_cols=30 Identities=33% Similarity=0.259 Sum_probs=27.5
Q ss_pred hHHHHHHHHHHHhCChhHHHHHHHHHHHHH
Q 012143 76 HAHFLLGLMYQRLGQPLKAVSSYEKAEEIL 105 (470)
Q Consensus 76 ~~~~~l~~~~~~~g~~~~A~~~~~~al~~~ 105 (470)
+++..||.+-...++|++|+.-|++++++.
T Consensus 2 dv~~~Lgeisle~e~f~qA~~D~~~aL~i~ 31 (38)
T PF10516_consen 2 DVYDLLGEISLENENFEQAIEDYEKALEIQ 31 (38)
T ss_pred cHHHHHHHHHHHhccHHHHHHHHHHHHHHH
Confidence 578889999999999999999999999873
|
It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. The X-ray structure of a domain containing three TPRs from protein phosphatase 5 revealed that TPR adopts a helix-turn-helix arrangement, with adjacent TPR motifs packing in a parallel fashion, resulting in a spiral of repeating anti-parallel alpha-helices []. The two helices are denoted helix A and helix B. The packing angle between helix A and helix B is ~24 degrees within a single TPR and generates a right-handed superhelical shape. Helix A interacts with helix B and with helix A' of the next TPR. Two protein surfaces are generated: the inner concave surface is contributed to mainly by residue on helices A, and the other surface presents residues from both helices A and B. This entry represents SHNi-TPR (Sim3-Hif1-NASP interrupted TPR), a sequence that is an interrupted form of TPR repeat []. |
| >COG3629 DnrI DNA-binding transcriptional activator of the SARP family [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=93.58 E-value=0.85 Score=39.25 Aligned_cols=64 Identities=22% Similarity=0.322 Sum_probs=59.4
Q ss_pred hHHHHHHHHHHHHcCChHHHHHHHHHHhhcCCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHhh
Q 012143 166 AVVWNTLGLILLKSGRLQSSISVLSSLLAVDPNNCDCIGNLGIAYFQSGDMEQSAKCFQDLILK 229 (470)
Q Consensus 166 ~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~ 229 (470)
..++..++..+...|+++.++..+++.+..+|-+...|..+-..|...|+...|+..|++.-..
T Consensus 153 ~~~l~~lae~~~~~~~~~~~~~~l~~Li~~dp~~E~~~~~lm~~y~~~g~~~~ai~~y~~l~~~ 216 (280)
T COG3629 153 IKALTKLAEALIACGRADAVIEHLERLIELDPYDEPAYLRLMEAYLVNGRQSAAIRAYRQLKKT 216 (280)
T ss_pred HHHHHHHHHHHHhcccHHHHHHHHHHHHhcCccchHHHHHHHHHHHHcCCchHHHHHHHHHHHH
Confidence 5577788999999999999999999999999999999999999999999999999999987653
|
|
| >PRK11619 lytic murein transglycosylase; Provisional | Back alignment and domain information |
|---|
Probab=93.52 E-value=8.7 Score=38.19 Aligned_cols=51 Identities=8% Similarity=-0.045 Sum_probs=42.1
Q ss_pred hcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCChhHHHHHHHHHHh
Q 012143 267 QASAVNVAKECLLAALKADPKAAHIWANLANAYYLTGDHRSSGKCLEKAAK 317 (470)
Q Consensus 267 ~~~~~~~A~~~~~~~~~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~ 317 (470)
..++++.+..++...-..........+.+|..+...|+.++|...|+++..
T Consensus 324 ~~~dw~~~~~~i~~L~~~~~~~~rw~YW~aRa~~~~g~~~~A~~~~~~~a~ 374 (644)
T PRK11619 324 GTGDRRGLNTWLARLPMEAKEKDEWRYWQADLLLEQGRKAEAEEILRQLMQ 374 (644)
T ss_pred HccCHHHHHHHHHhcCHhhccCHhhHHHHHHHHHHcCCHHHHHHHHHHHhc
Confidence 678888888888776554455788999999999999999999999999854
|
|
| >COG1747 Uncharacterized N-terminal domain of the transcription elongation factor GreA [Function unknown] | Back alignment and domain information |
|---|
Probab=93.47 E-value=6.6 Score=36.66 Aligned_cols=60 Identities=12% Similarity=0.121 Sum_probs=43.6
Q ss_pred HHHHHcCChHHHHHHHHHHhhcCCCChHHHHHHHHHHHH--------------------cCCHHHHHHHHHHHHhhCCCC
Q 012143 174 LILLKSGRLQSSISVLSSLLAVDPNNCDCIGNLGIAYFQ--------------------SGDMEQSAKCFQDLILKDQNH 233 (470)
Q Consensus 174 ~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~la~~~~~--------------------~g~~~~A~~~~~~~l~~~p~~ 233 (470)
.-|....++.+|+..+...++.+..+..+.-.+..-+.. -.++.+++.-|++.+..+..+
T Consensus 213 ~~Ys~~eN~~eai~Ilk~il~~d~k~~~ar~~~i~~lRd~y~~~~~~e~yl~~s~i~~~~rnf~~~l~dFek~m~f~eGn 292 (711)
T COG1747 213 KKYSENENWTEAIRILKHILEHDEKDVWARKEIIENLRDKYRGHSQLEEYLKISNISQSGRNFFEALNDFEKLMHFDEGN 292 (711)
T ss_pred HHhccccCHHHHHHHHHHHhhhcchhhhHHHHHHHHHHHHhccchhHHHHHHhcchhhccccHHHHHHHHHHHheeccCc
Confidence 345567889999999999999888887776666555444 456778888888877665443
|
|
| >PF15015 NYD-SP12_N: Spermatogenesis-associated, N-terminal | Back alignment and domain information |
|---|
Probab=93.38 E-value=0.71 Score=41.43 Aligned_cols=77 Identities=6% Similarity=-0.018 Sum_probs=60.4
Q ss_pred HHHHHHHHHHcCChHHHHHHHHHHhhcCCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHh---hCCCChHHHHHHHHHHH
Q 012143 169 WNTLGLILLKSGRLQSSISVLSSLLAVDPNNCDCIGNLGIAYFQSGDMEQSAKCFQDLIL---KDQNHPAALINYAALLL 245 (470)
Q Consensus 169 ~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~---~~p~~~~~~~~l~~~~~ 245 (470)
-..+..||.++++.+-|+..-.+.|.++|....-+...|.++..+.+|.+|-..+.-+.- +...+......+...|+
T Consensus 231 etklv~CYL~~rkpdlALnh~hrsI~lnP~~frnHLrqAavfR~LeRy~eAarSamia~ymywl~g~~~q~~S~lIklyW 310 (569)
T PF15015_consen 231 ETKLVTCYLRMRKPDLALNHSHRSINLNPSYFRNHLRQAAVFRRLERYSEAARSAMIADYMYWLSGGSEQRISKLIKLYW 310 (569)
T ss_pred HHHHHHhhhhcCCCchHHHHHhhhhhcCcchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCchHhHHHHHHHHH
Confidence 446889999999999999999999999999999999999999999999999877655442 33333333344444444
|
|
| >PF11207 DUF2989: Protein of unknown function (DUF2989); InterPro: IPR021372 Some members in this bacterial family of proteins are annotated as lipoproteins however this cannot be confirmed | Back alignment and domain information |
|---|
Probab=93.36 E-value=1.5 Score=35.41 Aligned_cols=42 Identities=19% Similarity=0.145 Sum_probs=26.0
Q ss_pred cCCHHHHHHHHHHHHhcCCC----CHHHHHHHHHHHHHcCChhHHH
Q 012143 268 ASAVNVAKECLLAALKADPK----AAHIWANLANAYYLTGDHRSSG 309 (470)
Q Consensus 268 ~~~~~~A~~~~~~~~~~~p~----~~~~~~~la~~~~~~g~~~~A~ 309 (470)
..+.++++..+.+++++.+. +++++..|+.++..+|+++.|.
T Consensus 153 krD~~Kt~~ll~~~L~l~~~~~~~n~eil~sLas~~~~~~~~e~AY 198 (203)
T PF11207_consen 153 KRDPEKTIQLLLRALELSNPDDNFNPEILKSLASIYQKLKNYEQAY 198 (203)
T ss_pred ccCHHHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHHhcchhhhh
Confidence 44556666666666655332 4667777777777777776663
|
|
| >PF07720 TPR_3: Tetratricopeptide repeat; InterPro: IPR011716 This entry includes tetratricopeptide-like repeats found in the LcrH/SycD-like chaperones [] | Back alignment and domain information |
|---|
Probab=93.28 E-value=0.39 Score=26.51 Aligned_cols=20 Identities=15% Similarity=0.453 Sum_probs=9.8
Q ss_pred HHHHHHHHHHcCCHHHHHHH
Q 012143 203 IGNLGIAYFQSGDMEQSAKC 222 (470)
Q Consensus 203 ~~~la~~~~~~g~~~~A~~~ 222 (470)
+..+|..+..+|++++|+..
T Consensus 4 ~y~~a~~~y~~~ky~~A~~~ 23 (36)
T PF07720_consen 4 LYGLAYNFYQKGKYDEAIHF 23 (36)
T ss_dssp HHHHHHHHHHTT-HHHHHHH
T ss_pred HHHHHHHHHHHhhHHHHHHH
Confidence 44445555555555555555
|
; PDB: 3KS2_O 3GZ2_A 3GZ1_A 3GYZ_A 4AM9_A 2VGX_A 2VGY_A. |
| >PF07720 TPR_3: Tetratricopeptide repeat; InterPro: IPR011716 This entry includes tetratricopeptide-like repeats found in the LcrH/SycD-like chaperones [] | Back alignment and domain information |
|---|
Probab=93.27 E-value=0.31 Score=26.92 Aligned_cols=33 Identities=21% Similarity=0.264 Sum_probs=25.7
Q ss_pred HHHHHHHHHHHHcCChHHHHHH--HHHHhhcCCCC
Q 012143 167 VVWNTLGLILLKSGRLQSSISV--LSSLLAVDPNN 199 (470)
Q Consensus 167 ~~~~~l~~~~~~~~~~~~A~~~--~~~a~~~~~~~ 199 (470)
+.++.+|..+..+|++++|+.. |+-+..++|.+
T Consensus 2 e~~y~~a~~~y~~~ky~~A~~~~~y~~l~~ld~~n 36 (36)
T PF07720_consen 2 EYLYGLAYNFYQKGKYDEAIHFFQYAFLCALDKYN 36 (36)
T ss_dssp HHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHTTT-
T ss_pred cHHHHHHHHHHHHhhHHHHHHHHHHHHHHHhcccC
Confidence 5678899999999999999999 54777776653
|
; PDB: 3KS2_O 3GZ2_A 3GZ1_A 3GYZ_A 4AM9_A 2VGX_A 2VGY_A. |
| >PF12862 Apc5: Anaphase-promoting complex subunit 5 | Back alignment and domain information |
|---|
Probab=93.23 E-value=0.39 Score=33.83 Aligned_cols=57 Identities=16% Similarity=0.186 Sum_probs=44.7
Q ss_pred HHHHcCChHHHHHHHHHHhhcCCC---------ChHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCC
Q 012143 175 ILLKSGRLQSSISVLSSLLAVDPN---------NCDCIGNLGIAYFQSGDMEQSAKCFQDLILKDQ 231 (470)
Q Consensus 175 ~~~~~~~~~~A~~~~~~a~~~~~~---------~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p 231 (470)
...+.|+|..|++.+.+.+..... ...+...+|.++...|++++|+..+++++++..
T Consensus 7 ~~~~~~dy~~A~d~L~~~fD~~~~~~~~~~~~~~~~all~lA~~~~~~G~~~~A~~~l~eAi~~Ar 72 (94)
T PF12862_consen 7 NALRSGDYSEALDALHRYFDYAKQSNNSSSNSGLAYALLNLAELHRRFGHYEEALQALEEAIRLAR 72 (94)
T ss_pred HHHHcCCHHHHHHHHHHHHHHHhhcccchhhHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHH
Confidence 346778899998888887765221 135678899999999999999999999998643
|
|
| >KOG1839 consensus Uncharacterized protein CLU1/cluA/TIF31 involved in mitochondrial morphology/distribution, also found associated with eIF-3 [General function prediction only] | Back alignment and domain information |
|---|
Probab=92.98 E-value=1.4 Score=45.74 Aligned_cols=160 Identities=16% Similarity=0.086 Sum_probs=96.0
Q ss_pred hhhHHHhcCCHHHHHH------HHH-HHHhcCCCCHHHHHHHHHHHHHcCChhHHHHHHHHHHhcCCC--------cccH
Q 012143 261 EGACLDQASAVNVAKE------CLL-AALKADPKAAHIWANLANAYYLTGDHRSSGKCLEKAAKLEPN--------CMST 325 (470)
Q Consensus 261 ~~~~~~~~~~~~~A~~------~~~-~~~~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~p~--------~~~~ 325 (470)
.|......|.+.+|.+ .+. ..-.+.|.....+..++.++...|++++|+..-.++.-+... ....
T Consensus 938 ~gq~~~~e~~~~~~~~~~~slnl~~~v~~~~h~~~~~~~~~La~l~~~~~d~~~Ai~~~~ka~ii~eR~~g~ds~~t~~~ 1017 (1236)
T KOG1839|consen 938 QGQEALLEDGFSEAYELPESLNLLNNVMGVLHPEVASKYRSLAKLSNRLGDNQEAIAQQRKACIISERVLGKDSPNTKLA 1017 (1236)
T ss_pred hhhhhhcccchhhhhhhhhhhhHHHHhhhhcchhHHHHHHHHHHHHhhhcchHHHHHhcccceeeechhccCCCHHHHHH
Confidence 4444445666776666 555 333457888999999999999999999999988877654322 1122
Q ss_pred HHHHHHHHHHHhhhccCchHHhhhhHHHHHHHhhcCCCCCCCcHHHHHHHHHHHhccccHHHHHHHHHHHh---------
Q 012143 326 RYAVAVSRIKDAERSQEPTEQLSWAGNEMASILREGDPVQIEPPIAWAGFAAVQKTHHEVAAAFETEENEL--------- 396 (470)
Q Consensus 326 ~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~--------- 396 (470)
+.+++ ......++...|...+.+..
T Consensus 1018 y~nla----------------------------------------------l~~f~~~~~~~al~~~~ra~~l~~Ls~ge 1051 (1236)
T KOG1839|consen 1018 YGNLA----------------------------------------------LYEFAVKNLSGALKSLNRALKLKLLSSGE 1051 (1236)
T ss_pred hhHHH----------------------------------------------HHHHhccCccchhhhHHHHHHhhccccCC
Confidence 22222 22222222222222222211
Q ss_pred -cchhhhhHhhHHHHHHHhccHHHHHHHHHHHHhcCC--------CcHHHHHHHHHHHHHcCChHHHHHHHHHHHHhhc
Q 012143 397 -SKMEECAGAGESAFLDQASAVNVAKECLLAALKADP--------KAAHIWANLANAYYLTGDHRSSGKCLEKVLMVYC 466 (470)
Q Consensus 397 -~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~p--------~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~ 466 (470)
.|.......+++.++...++++.|+.+.+.|+..+- .....+..++++...++++..|....+....+|.
T Consensus 1052 ~hP~~a~~~~nle~l~~~v~e~d~al~~le~A~a~~~~v~g~~~l~~~~~~~~~a~l~~s~~dfr~al~~ek~t~~iy~ 1130 (1236)
T KOG1839|consen 1052 DHPPTALSFINLELLLLGVEEADTALRYLESALAKNKKVLGPKELETALSYHALARLFESMKDFRNALEHEKVTYGIYK 1130 (1236)
T ss_pred CCCchhhhhhHHHHHHhhHHHHHHHHHHHHHHHHHHhhhcCccchhhhhHHHHHHHHHhhhHHHHHHHHHHhhHHHHHH
Confidence 122222334555566667777888888877776431 2345666777777778888888877777777664
|
|
| >PF11207 DUF2989: Protein of unknown function (DUF2989); InterPro: IPR021372 Some members in this bacterial family of proteins are annotated as lipoproteins however this cannot be confirmed | Back alignment and domain information |
|---|
Probab=92.90 E-value=3 Score=33.77 Aligned_cols=43 Identities=12% Similarity=0.175 Sum_probs=32.7
Q ss_pred CcccHHHHHHHHHHhhhcCcc----chHHHHHHHHHHHHcCChHHHH
Q 012143 144 EPEELEEILSKLKESMQSDTR----QAVVWNTLGLILLKSGRLQSSI 186 (470)
Q Consensus 144 ~~~~~~~A~~~~~~~~~~~p~----~~~~~~~l~~~~~~~~~~~~A~ 186 (470)
...+.++++..+.++++..+. +++++..|+.++..+|+++.|-
T Consensus 152 ~krD~~Kt~~ll~~~L~l~~~~~~~n~eil~sLas~~~~~~~~e~AY 198 (203)
T PF11207_consen 152 TKRDPEKTIQLLLRALELSNPDDNFNPEILKSLASIYQKLKNYEQAY 198 (203)
T ss_pred HccCHHHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHHhcchhhhh
Confidence 345567777777777765433 4788999999999999998874
|
|
| >COG2912 Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=92.85 E-value=0.32 Score=41.15 Aligned_cols=65 Identities=14% Similarity=-0.006 Sum_probs=59.5
Q ss_pred hHHHhcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCChhHHHHHHHHHHhcCCCcccHHH
Q 012143 263 ACLDQASAVNVAKECLLAALKADPKAAHIWANLANAYYLTGDHRSSGKCLEKAAKLEPNCMSTRY 327 (470)
Q Consensus 263 ~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~p~~~~~~~ 327 (470)
..+...++++.|..+.++.+..+|.++.-+.-.|.+|.++|.+.-|+..++..++..|+++.+-.
T Consensus 189 ~~~~~e~~~~~al~~~~r~l~l~P~dp~eirDrGliY~ql~c~~vAl~dl~~~~~~~P~~~~a~~ 253 (269)
T COG2912 189 AALLRELQWELALRVAERLLDLNPEDPYEIRDRGLIYAQLGCYHVALEDLSYFVEHCPDDPIAEM 253 (269)
T ss_pred HHHHHhhchHHHHHHHHHHHhhCCCChhhccCcHHHHHhcCCchhhHHHHHHHHHhCCCchHHHH
Confidence 34557899999999999999999999999999999999999999999999999999999876544
|
|
| >PF10579 Rapsyn_N: Rapsyn N-terminal myristoylation and linker region; InterPro: IPR019568 Neuromuscular junction formation relies upon the clustering of acetylcholine receptors and other proteins in the muscle membrane | Back alignment and domain information |
|---|
Probab=92.57 E-value=1.7 Score=28.95 Aligned_cols=37 Identities=11% Similarity=0.235 Sum_probs=19.1
Q ss_pred HHHHHHcCCHHHHHHHHHHHHhhCCCChHHHHHHHHH
Q 012143 207 GIAYFQSGDMEQSAKCFQDLILKDQNHPAALINYAAL 243 (470)
Q Consensus 207 a~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~l~~~ 243 (470)
|.-++...+.++|+..++++++..++.+..+..+|.+
T Consensus 13 GlkLY~~~~~~~Al~~W~~aL~k~~~~~~rf~~lG~l 49 (80)
T PF10579_consen 13 GLKLYHQNETQQALQKWRKALEKITDREDRFRVLGYL 49 (80)
T ss_pred HHHHhccchHHHHHHHHHHHHhhcCChHHHHHHHHHH
Confidence 3334455555555555555555555555544444443
|
Rapsyn is a peripheral membrane protein that is selectively concentrated at the neuromuscular junction and is essential for the formation of synaptic acetylcholine receptor aggregates. Acetylcholine receptors fail to aggregate beneath nerve terminals in mice where rapsyn has been knocked out. The N-terminal six amino acids of rapsyn are its myristoylation site, and myristoylation is necessary for the targeting of the protein to the membrane []. ; GO: 0008270 zinc ion binding, 0033130 acetylcholine receptor binding, 0007268 synaptic transmission, 0005856 cytoskeleton, 0030054 cell junction, 0045211 postsynaptic membrane |
| >smart00299 CLH Clathrin heavy chain repeat homology | Back alignment and domain information |
|---|
Probab=92.51 E-value=3.8 Score=31.35 Aligned_cols=119 Identities=13% Similarity=0.157 Sum_probs=76.4
Q ss_pred hcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCChhHHHHHHHHHHhcCCCcccHHHHHHHHHHHHhhhccCchHH
Q 012143 267 QASAVNVAKECLLAALKADPKAAHIWANLANAYYLTGDHRSSGKCLEKAAKLEPNCMSTRYAVAVSRIKDAERSQEPTEQ 346 (470)
Q Consensus 267 ~~~~~~~A~~~~~~~~~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~p~~~~~~~~l~~~~~~~~~~~~~~~~~ 346 (470)
..+.+...+.+++..+..++.++..+..+..+|...+ ..+.+..++. .++..+.-..+..+
T Consensus 19 ~~~~~~~l~~yLe~~~~~~~~~~~~~~~li~ly~~~~-~~~ll~~l~~----~~~~yd~~~~~~~c-------------- 79 (140)
T smart00299 19 KRNLLEELIPYLESALKLNSENPALQTKLIELYAKYD-PQKEIERLDN----KSNHYDIEKVGKLC-------------- 79 (140)
T ss_pred hCCcHHHHHHHHHHHHccCccchhHHHHHHHHHHHHC-HHHHHHHHHh----ccccCCHHHHHHHH--------------
Confidence 4678899999999999988888888889998887653 4455555552 12222111111111
Q ss_pred hhhhHHHHHHHhhcCCCCCCCcHHHHHHHHHHHhccccHHHHHHHHHHHhcchhhhhHhhHHHHHHHhccHHHHHHHHHH
Q 012143 347 LSWAGNEMASILREGDPVQIEPPIAWAGFAAVQKTHHEVAAAFETEENELSKMEECAGAGESAFLDQASAVNVAKECLLA 426 (470)
Q Consensus 347 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~ 426 (470)
.. ...|.....++.+.|.+.+|+..+ ....++++.|++++.+
T Consensus 80 ------------~~--------~~l~~~~~~l~~k~~~~~~Al~~~------------------l~~~~d~~~a~~~~~~ 121 (140)
T smart00299 80 ------------EK--------AKLYEEAVELYKKDGNFKDAIVTL------------------IEHLGNYEKAIEYFVK 121 (140)
T ss_pred ------------HH--------cCcHHHHHHHHHhhcCHHHHHHHH------------------HHcccCHHHHHHHHHh
Confidence 00 123555666777778888877663 2233678888888886
Q ss_pred HHhcCCCcHHHHHHHHHHHHH
Q 012143 427 ALKADPKAAHIWANLANAYYL 447 (470)
Q Consensus 427 al~~~p~~~~~~~~la~~~~~ 447 (470)
+.+++.|..++..+..
T Consensus 122 -----~~~~~lw~~~~~~~l~ 137 (140)
T smart00299 122 -----QNNPELWAEVLKALLD 137 (140)
T ss_pred -----CCCHHHHHHHHHHHHc
Confidence 3577888888876553
|
|
| >KOG4814 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=92.39 E-value=11 Score=36.35 Aligned_cols=102 Identities=13% Similarity=0.085 Sum_probs=77.7
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHhhCCCChHHHHHHHHHHHhhhcccccccccchhhhhHHHhcCCHHHHHHHHHHHH
Q 012143 203 IGNLGIAYFQSGDMEQSAKCFQDLILKDQNHPAALINYAALLLCKYGSVLAGAGANTGEGACLDQASAVNVAKECLLAAL 282 (470)
Q Consensus 203 ~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~ 282 (470)
+.+-|.-.++..+|..+++.|...+...|.+.....- +.... .+..||....+.+.|.+++.++-
T Consensus 357 LWn~A~~~F~~~~Y~~s~~~y~~Sl~~i~~D~~~~~F-aK~qR--------------~l~~CYL~L~QLD~A~E~~~EAE 421 (872)
T KOG4814|consen 357 LWNTAKKLFKMEKYVVSIRFYKLSLKDIISDNYSDRF-AKIQR--------------ALQVCYLKLEQLDNAVEVYQEAE 421 (872)
T ss_pred HHHhhHHHHHHHHHHHHHHHHHHHHHhccchhhhhHH-HHHHH--------------HHHHHHhhHHHHHHHHHHHHHHH
Confidence 4455666778889999999999999887766543221 22222 13456668889999999999999
Q ss_pred hcCCCCHHHHHHHHHHHHHcCChhHHHHHHHHHHhcC
Q 012143 283 KADPKAAHIWANLANAYYLTGDHRSSGKCLEKAAKLE 319 (470)
Q Consensus 283 ~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~ 319 (470)
+.+|.++-....+-.+....|.-++|+.+..+.....
T Consensus 422 ~~d~~~~l~q~~~~~~~~~E~~Se~AL~~~~~~~s~~ 458 (872)
T KOG4814|consen 422 EVDRQSPLCQLLMLQSFLAEDKSEEALTCLQKIKSSE 458 (872)
T ss_pred hhccccHHHHHHHHHHHHHhcchHHHHHHHHHHHhhh
Confidence 9999998888888888889999999998888776543
|
|
| >COG3947 Response regulator containing CheY-like receiver and SARP domains [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=92.09 E-value=0.93 Score=38.65 Aligned_cols=62 Identities=23% Similarity=0.072 Sum_probs=55.1
Q ss_pred HhhHHHHHHHhccHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHcCChHHHHHHHHHHHHhh
Q 012143 404 GAGESAFLDQASAVNVAKECLLAALKADPKAAHIWANLANAYYLTGDHRSSGKCLEKVLMVY 465 (470)
Q Consensus 404 ~~~l~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~ 465 (470)
....+..|...|.+.+|+.+.++++..+|-+...+..+-.++..+||--.|++.|++.-+..
T Consensus 282 lgkva~~yle~g~~neAi~l~qr~ltldpL~e~~nk~lm~~la~~gD~is~~khyerya~vl 343 (361)
T COG3947 282 LGKVARAYLEAGKPNEAIQLHQRALTLDPLSEQDNKGLMASLATLGDEISAIKHYERYAEVL 343 (361)
T ss_pred HHHHHHHHHHcCChHHHHHHHHHHhhcChhhhHHHHHHHHHHHHhccchhhhhHHHHHHHHH
Confidence 34556678899999999999999999999999999999999999999999999998876554
|
|
| >PF10579 Rapsyn_N: Rapsyn N-terminal myristoylation and linker region; InterPro: IPR019568 Neuromuscular junction formation relies upon the clustering of acetylcholine receptors and other proteins in the muscle membrane | Back alignment and domain information |
|---|
Probab=92.05 E-value=1.3 Score=29.46 Aligned_cols=58 Identities=16% Similarity=-0.015 Sum_probs=44.8
Q ss_pred HHHHHHhccHHHHHHHHHHHHhcCCCcHHHHHHHH---HHHHHcCChHHHHHHHHHHHHhh
Q 012143 408 SAFLDQASAVNVAKECLLAALKADPKAAHIWANLA---NAYYLTGDHRSSGKCLEKVLMVY 465 (470)
Q Consensus 408 ~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la---~~~~~~g~~~~A~~~~~~al~~~ 465 (470)
|.-+....+.++|+..++++++..++.++-+..+| .+|...|++++.+++--.=+++.
T Consensus 13 GlkLY~~~~~~~Al~~W~~aL~k~~~~~~rf~~lG~l~qA~~e~Gkyr~~L~fA~~Q~~~A 73 (80)
T PF10579_consen 13 GLKLYHQNETQQALQKWRKALEKITDREDRFRVLGYLIQAHMEWGKYREMLAFALQQLEIA 73 (80)
T ss_pred HHHHhccchHHHHHHHHHHHHhhcCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33455778889999999999999888877666555 45688899999888877666654
|
Rapsyn is a peripheral membrane protein that is selectively concentrated at the neuromuscular junction and is essential for the formation of synaptic acetylcholine receptor aggregates. Acetylcholine receptors fail to aggregate beneath nerve terminals in mice where rapsyn has been knocked out. The N-terminal six amino acids of rapsyn are its myristoylation site, and myristoylation is necessary for the targeting of the protein to the membrane []. ; GO: 0008270 zinc ion binding, 0033130 acetylcholine receptor binding, 0007268 synaptic transmission, 0005856 cytoskeleton, 0030054 cell junction, 0045211 postsynaptic membrane |
| >PF10373 EST1_DNA_bind: Est1 DNA/RNA binding domain; InterPro: IPR018834 Est1 is a protein which recruits or activates telomerase at the site of polymerisation [, ] | Back alignment and domain information |
|---|
Probab=91.89 E-value=0.75 Score=40.32 Aligned_cols=61 Identities=15% Similarity=0.115 Sum_probs=30.7
Q ss_pred HHHHHHHHhhcCCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCChHHHHHHHHHHH
Q 012143 185 SISVLSSLLAVDPNNCDCIGNLGIAYFQSGDMEQSAKCFQDLILKDQNHPAALINYAALLL 245 (470)
Q Consensus 185 A~~~~~~a~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~l~~~~~ 245 (470)
|..+|.+|+.+.|.+...+..+|.++...|+.-.|+-+|-+++......+.+..++..++.
T Consensus 1 A~~~Y~~A~~l~P~~G~p~nQLAvl~~~~~~~l~avy~y~Rsl~~~~Pf~~A~~NL~~lf~ 61 (278)
T PF10373_consen 1 AERYYRKAIRLLPSNGNPYNQLAVLASYQGDDLDAVYYYIRSLAVRIPFPSARENLQKLFE 61 (278)
T ss_dssp HHHHHHHHHHH-TTBSHHHHHHHHHHHHTT-HHHHHHHHHHHHSSSB--HHHHHHHHHHHH
T ss_pred CHHHHHHHHHhCCCCCCcccchhhhhccccchHHHHHHHHHHHhcCCCcHHHHHHHHHHHH
Confidence 4455555555555555555555555555555555555555555443333444445444443
|
This is the DNA/RNA binding domain of EST1 []. ; PDB: 1YA0_B. |
| >PRK11619 lytic murein transglycosylase; Provisional | Back alignment and domain information |
|---|
Probab=91.39 E-value=17 Score=36.31 Aligned_cols=79 Identities=5% Similarity=-0.052 Sum_probs=50.7
Q ss_pred HHHHHHHHHHHhcc-hhhhhHhhHHHHHHHhccHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHcCChHHHHHHHHHHHH
Q 012143 385 VAAAFETEENELSK-MEECAGAGESAFLDQASAVNVAKECLLAALKADPKAAHIWANLANAYYLTGDHRSSGKCLEKVLM 463 (470)
Q Consensus 385 ~~~A~~~~~~~~~~-~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~ 463 (470)
..++...+...... .+....--....-...++++....++...-..........|.+|..+...|+.++|..+|+++..
T Consensus 295 ~~~a~~w~~~~~~~~~~~~~~e~r~r~Al~~~dw~~~~~~i~~L~~~~~~~~rw~YW~aRa~~~~g~~~~A~~~~~~~a~ 374 (644)
T PRK11619 295 TDEQAKWRDDVIMRSQSTSLLERRVRMALGTGDRRGLNTWLARLPMEAKEKDEWRYWQADLLLEQGRKAEAEEILRQLMQ 374 (644)
T ss_pred CHHHHHHHHhcccccCCcHHHHHHHHHHHHccCHHHHHHHHHhcCHhhccCHhhHHHHHHHHHHcCCHHHHHHHHHHHhc
Confidence 44555555543322 12222222222444778888877777775444445677889999999889999999999998743
|
|
| >PF04053 Coatomer_WDAD: Coatomer WD associated region ; InterPro: IPR006692 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment | Back alignment and domain information |
|---|
Probab=91.38 E-value=13 Score=35.05 Aligned_cols=84 Identities=14% Similarity=0.184 Sum_probs=35.7
Q ss_pred CcccHHHHHHHHH--HhhhcCccchHHHHHHHHHHHHcCChHHHHHHHHHHhhcCCCChHHHHHHHHHHHHcCCHHHHHH
Q 012143 144 EPEELEEILSKLK--ESMQSDTRQAVVWNTLGLILLKSGRLQSSISVLSSLLAVDPNNCDCIGNLGIAYFQSGDMEQSAK 221 (470)
Q Consensus 144 ~~~~~~~A~~~~~--~~~~~~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~la~~~~~~g~~~~A~~ 221 (470)
..++++++..... +.+..-| ..-...++..+.++|.++.|+... .+++..+.|+ .+.|+.+.|.+
T Consensus 273 ~~~d~~~v~~~i~~~~ll~~i~--~~~~~~i~~fL~~~G~~e~AL~~~--------~D~~~rFeLA---l~lg~L~~A~~ 339 (443)
T PF04053_consen 273 LRGDFEEVLRMIAASNLLPNIP--KDQGQSIARFLEKKGYPELALQFV--------TDPDHRFELA---LQLGNLDIALE 339 (443)
T ss_dssp HTT-HHH-----HHHHTGGG----HHHHHHHHHHHHHTT-HHHHHHHS--------S-HHHHHHHH---HHCT-HHHHHH
T ss_pred HcCChhhhhhhhhhhhhcccCC--hhHHHHHHHHHHHCCCHHHHHhhc--------CChHHHhHHH---HhcCCHHHHHH
Confidence 4566777665554 2222222 223455666777777777777643 2233333332 34555555544
Q ss_pred HHHHHHhhCCCChHHHHHHHHHHH
Q 012143 222 CFQDLILKDQNHPAALINYAALLL 245 (470)
Q Consensus 222 ~~~~~l~~~p~~~~~~~~l~~~~~ 245 (470)
..+. .+++..|..+|...+
T Consensus 340 ~a~~-----~~~~~~W~~Lg~~AL 358 (443)
T PF04053_consen 340 IAKE-----LDDPEKWKQLGDEAL 358 (443)
T ss_dssp HCCC-----CSTHHHHHHHHHHHH
T ss_pred HHHh-----cCcHHHHHHHHHHHH
Confidence 3322 224445555555544
|
This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the WD-associated region found in coatomer subunits alpha, beta and beta' subunits. The alpha-subunit (RET1P) of the coatomer complex in Saccharomyces cerevisiae (Baker's yeast), participates in membrane transport between the endoplasmic reticulum and Golgi apparatus. The protein contains six WD-40 repeat motifs in its N-terminal region []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006886 intracellular protein transport, 0016192 vesicle-mediated transport, 0030117 membrane coat; PDB: 3MKQ_B. |
| >PF15015 NYD-SP12_N: Spermatogenesis-associated, N-terminal | Back alignment and domain information |
|---|
Probab=90.90 E-value=2.5 Score=38.18 Aligned_cols=55 Identities=9% Similarity=0.022 Sum_probs=49.2
Q ss_pred hhhHHHhcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCChhHHHHHHHHH
Q 012143 261 EGACLDQASAVNVAKECLLAALKADPKAAHIWANLANAYYLTGDHRSSGKCLEKA 315 (470)
Q Consensus 261 ~~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~a 315 (470)
+..||.+.++++-|+....+.|..+|..+.-+...|.++..+.+|.+|...+--+
T Consensus 234 lv~CYL~~rkpdlALnh~hrsI~lnP~~frnHLrqAavfR~LeRy~eAarSamia 288 (569)
T PF15015_consen 234 LVTCYLRMRKPDLALNHSHRSINLNPSYFRNHLRQAAVFRRLERYSEAARSAMIA 288 (569)
T ss_pred HHHhhhhcCCCchHHHHHhhhhhcCcchhhHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4567779999999999999999999999999999999999999999987766544
|
|
| >PF00244 14-3-3: 14-3-3 protein; InterPro: IPR023410 The 14-3-3 proteins are a large family of approximately 30kDa acidic proteins which exist primarily as homo- and heterodimeric within all eukaryotic cells [, ] | Back alignment and domain information |
|---|
Probab=90.59 E-value=9.8 Score=32.30 Aligned_cols=59 Identities=20% Similarity=0.227 Sum_probs=37.4
Q ss_pred hhhHHHhcCCHHHHHHHHHHHHhcCCC-CHHHHHHHHHHHH-HcCChhHHHHHHHHHHhcC
Q 012143 261 EGACLDQASAVNVAKECLLAALKADPK-AAHIWANLANAYY-LTGDHRSSGKCLEKAAKLE 319 (470)
Q Consensus 261 ~~~~~~~~~~~~~A~~~~~~~~~~~p~-~~~~~~~la~~~~-~~g~~~~A~~~~~~a~~~~ 319 (470)
++.+..+.|+|++.+.++++++..+|+ +.+-...++.+|- ..|....+...+....+..
T Consensus 7 ~Aklaeq~eRy~dmv~~mk~~~~~~~eLt~eERnLlsvayKn~i~~~R~s~R~l~~~e~~~ 67 (236)
T PF00244_consen 7 LAKLAEQAERYDDMVEYMKQLIEMNPELTEEERNLLSVAYKNVIGSRRASWRILSSIEQKE 67 (236)
T ss_dssp HHHHHHHTTHHHHHHHHHHHHHHTSS---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHhcCHHHHHHHHHHHHccCCCCCHHHHHHHHHHHHhccccchHHHHhhhhHhhhh
Confidence 456666899999999999999998776 3444555555552 3455555555555544433
|
There is a high degree of sequence identity and conservation between all the 14-3-3 isotypes, particularly in the regions which form the dimer interface or line the central ligand binding channel of the dimeric molecule. Each 14-3-3 protein sequence can be roughly divided into three sections: a divergent amino terminus, the conserved core region and a divergent carboxyl terminus. The conserved middle core region of the 14-3-3s encodes an amphipathic groove that forms the main functional domain, a cradle for interacting with client proteins. The monomer consists of nine helices organised in an antiparallel manner, forming an L-shaped structure. The interior of the L-structure is composed of four helices: H3 and H5, which contain many charged and polar amino acids, and H7 and H9, which contain hydrophobic amino acids. These four helices form the concave amphipathic groove that interacts with target peptides. 14-3-3 proteins mainly bind proteins containing phosphothreonine or phosphoserine motifs however exceptions to this rule do exist. Extensive investigation of the 14-3-3 binding site of the mammalian serine/threonine kinase Raf-1 has produced a consensus sequence for 14-3-3-binding, RSxpSxP (in the single-letter amino-acid code, where x denotes any amino acid and p indicates that the next residue is phosphorylated). 14-3-3 proteins appear to effect intracellular signalling in one of three ways - by direct regulation of the catalytic activity of the bound protein, by regulating interactions between the bound protein and other molecules in the cell by sequestration or modification or by controlling the subcellular localisation of the bound ligand. Proteins appear to initially bind to a single dominant site and then subsequently to many, much weaker secondary interaction sites. The 14-3-3 dimer is capable of changing the conformation of its bound ligand whilst itself undergoing minimal structural alteration. This entry represents the structural domain found in 14-3-3 proteins.; PDB: 2O8P_A 3AXY_D 2C74_A 2C63_A 4DX0_A 1YWT_A 3P1O_A 3P1N_A 4DAU_A 3U9X_A .... |
| >COG3947 Response regulator containing CheY-like receiver and SARP domains [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=90.22 E-value=1.5 Score=37.42 Aligned_cols=59 Identities=17% Similarity=0.206 Sum_probs=52.1
Q ss_pred HHHHHHHHHHcCChHHHHHHHHHHhhcCCCChHHHHHHHHHHHHcCCHHHHHHHHHHHH
Q 012143 169 WNTLGLILLKSGRLQSSISVLSSLLAVDPNNCDCIGNLGIAYFQSGDMEQSAKCFQDLI 227 (470)
Q Consensus 169 ~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~l 227 (470)
+...+..|...|.+.+|+++.++++.++|-+...+..+-.++...|+--.+++.|++.-
T Consensus 282 lgkva~~yle~g~~neAi~l~qr~ltldpL~e~~nk~lm~~la~~gD~is~~khyerya 340 (361)
T COG3947 282 LGKVARAYLEAGKPNEAIQLHQRALTLDPLSEQDNKGLMASLATLGDEISAIKHYERYA 340 (361)
T ss_pred HHHHHHHHHHcCChHHHHHHHHHHhhcChhhhHHHHHHHHHHHHhccchhhhhHHHHHH
Confidence 34457778899999999999999999999999999999999999999888888887754
|
|
| >KOG2581 consensus 26S proteasome regulatory complex, subunit RPN3/PSMD3 [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=89.89 E-value=15 Score=33.35 Aligned_cols=131 Identities=14% Similarity=0.112 Sum_probs=87.8
Q ss_pred HHHcCChHHHHHHHHHHhhc----CCC-----ChHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC--CCChHHHHHHHHHH
Q 012143 176 LLKSGRLQSSISVLSSLLAV----DPN-----NCDCIGNLGIAYFQSGDMEQSAKCFQDLILKD--QNHPAALINYAALL 244 (470)
Q Consensus 176 ~~~~~~~~~A~~~~~~a~~~----~~~-----~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~--p~~~~~~~~l~~~~ 244 (470)
++.++++.+|.++-+..+.. +.. ....|+.+..+|...|+...-...+...+... ..+......+..++
T Consensus 136 l~d~K~~kea~~~~~~~l~~i~~~nrRtlD~i~ak~~fy~~l~~E~~~~l~~~rs~l~~~lrtAtLrhd~e~qavLiN~L 215 (493)
T KOG2581|consen 136 LIDQKEYKEADKISDALLASISIQNRRTLDLIAAKLYFYLYLSYELEGRLADIRSFLHALLRTATLRHDEEGQAVLINLL 215 (493)
T ss_pred HHhhHHHHHHHHHHHHHHHHHHhcchhhHHHHHHHHHHHHHHHHHhhcchHHHHHHHHHHHHHhhhcCcchhHHHHHHHH
Confidence 34568889988887766542 111 24578888889999999777776666655432 12233333333333
Q ss_pred HhhhcccccccccchhhhhHHHhcCCHHHHHHHHHHHHhc----CCCCHHHHHHHHHHHHHcCChhHHHHHHHHHHhcCC
Q 012143 245 LCKYGSVLAGAGANTGEGACLDQASAVNVAKECLLAALKA----DPKAAHIWANLANAYYLTGDHRSSGKCLEKAAKLEP 320 (470)
Q Consensus 245 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~----~p~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~p 320 (470)
. ..|...+.|+.|-....+..-- +.......+.+|.+..-+++|..|.+++-.|+...|
T Consensus 216 L-----------------r~yL~n~lydqa~~lvsK~~~pe~~snne~ARY~yY~GrIkaiqldYssA~~~~~qa~rkap 278 (493)
T KOG2581|consen 216 L-----------------RNYLHNKLYDQADKLVSKSVYPEAASNNEWARYLYYLGRIKAIQLDYSSALEYFLQALRKAP 278 (493)
T ss_pred H-----------------HHHhhhHHHHHHHHHhhcccCccccccHHHHHHHHHHhhHHHhhcchhHHHHHHHHHHHhCc
Confidence 3 2344677888888877765411 112356678899999999999999999999999999
Q ss_pred Ccc
Q 012143 321 NCM 323 (470)
Q Consensus 321 ~~~ 323 (470)
.+.
T Consensus 279 q~~ 281 (493)
T KOG2581|consen 279 QHA 281 (493)
T ss_pred chh
Confidence 843
|
|
| >TIGR03504 FimV_Cterm FimV C-terminal domain | Back alignment and domain information |
|---|
Probab=89.83 E-value=0.73 Score=26.80 Aligned_cols=25 Identities=36% Similarity=0.492 Sum_probs=21.0
Q ss_pred HHHHHHHHHcCChHHHHHHHHHHHH
Q 012143 439 ANLANAYYLTGDHRSSGKCLEKVLM 463 (470)
Q Consensus 439 ~~la~~~~~~g~~~~A~~~~~~al~ 463 (470)
+.||..|..+|+.+.|.+.++++++
T Consensus 3 LdLA~ayie~Gd~e~Ar~lL~evl~ 27 (44)
T TIGR03504 3 LDLARAYIEMGDLEGARELLEEVIE 27 (44)
T ss_pred hHHHHHHHHcCChHHHHHHHHHHHH
Confidence 5788888888888888888888875
|
This protein is found at the extreme C-terminus of FimV from Pseudomonas aeruginosa, and of TspA of Neisseria meningitidis. Disruption of the former blocks twitching motility from type IV pili; Semmler, et al. suggest a role in peptidoglycan layer remodelling required by type IV fimbrial systems. |
| >COG5159 RPN6 26S proteasome regulatory complex component [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=89.73 E-value=12 Score=32.11 Aligned_cols=161 Identities=14% Similarity=0.105 Sum_probs=88.9
Q ss_pred ccCcccHHHHHHHHHHhhhcCc--------cchHHHHHHHHHHHHcCChHHHHHHHHH---Hhhc--CCCChHHHHHHHH
Q 012143 142 ELEPEELEEILSKLKESMQSDT--------RQAVVWNTLGLILLKSGRLQSSISVLSS---LLAV--DPNNCDCIGNLGI 208 (470)
Q Consensus 142 ~~~~~~~~~A~~~~~~~~~~~p--------~~~~~~~~l~~~~~~~~~~~~A~~~~~~---a~~~--~~~~~~~~~~la~ 208 (470)
..+.+++++|+..|.+.+.... ....+...++.+|...|++..--+.... +... .|....+...+..
T Consensus 13 ~v~~~~~~~ai~~yk~iL~kg~s~dek~~nEqE~tvlel~~lyv~~g~~~~l~~~i~~sre~m~~ftk~k~~KiirtLie 92 (421)
T COG5159 13 AVKSNDIEKAIGEYKRILGKGVSKDEKTLNEQEATVLELFKLYVSKGDYCSLGDTITSSREAMEDFTKPKITKIIRTLIE 92 (421)
T ss_pred hhhhhhHHHHHHHHHHHhcCCCChhhhhhhHHHHHHHHHHHHHHhcCCcchHHHHHHhhHHHHHHhcchhHHHHHHHHHH
Confidence 3467889999999999987621 2234677899999999987654443332 2221 1111112211111
Q ss_pred HH-HHcCCHHHHHHHHHHHHhhCCCChHHHHHHHHHHHhhhcccccccccchhhhhHHHhcCCHHHHHHHHHHHHhc---
Q 012143 209 AY-FQSGDMEQSAKCFQDLILKDQNHPAALINYAALLLCKYGSVLAGAGANTGEGACLDQASAVNVAKECLLAALKA--- 284 (470)
Q Consensus 209 ~~-~~~g~~~~A~~~~~~~l~~~p~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~--- 284 (470)
-+ .....++.-+.....+++...........+..- ..+...+.+.|+|.+|+......+..
T Consensus 93 kf~~~~dsl~dqi~v~~~~iewA~rEkr~fLr~~Le---------------~Kli~l~y~~~~YsdalalIn~ll~ElKk 157 (421)
T COG5159 93 KFPYSSDSLEDQIKVLTALIEWADREKRKFLRLELE---------------CKLIYLLYKTGKYSDALALINPLLHELKK 157 (421)
T ss_pred hcCCCCccHHHHHHHHHHHHHHHHHHHHHHHHHHHH---------------HHHHHHHHhcccHHHHHHHHHHHHHHHHh
Confidence 11 122344455555555544322221111111111 11334455788888888777655432
Q ss_pred ---CCCCHHHHHHHHHHHHHcCChhHHHHHHHHHHh
Q 012143 285 ---DPKAAHIWANLANAYYLTGDHRSSGKCLEKAAK 317 (470)
Q Consensus 285 ---~p~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~ 317 (470)
.|.-..++..-..+|....+..++...+..+..
T Consensus 158 ~DDK~~Li~vhllESKvyh~irnv~KskaSLTaArt 193 (421)
T COG5159 158 YDDKINLITVHLLESKVYHEIRNVSKSKASLTAART 193 (421)
T ss_pred hcCccceeehhhhhHHHHHHHHhhhhhhhHHHHHHH
Confidence 244556677777888888888877777766544
|
|
| >smart00386 HAT HAT (Half-A-TPR) repeats | Back alignment and domain information |
|---|
Probab=89.03 E-value=1.2 Score=23.50 Aligned_cols=30 Identities=23% Similarity=0.408 Sum_probs=25.7
Q ss_pred ccHHHHHHHHHHHHhcCCCcHHHHHHHHHH
Q 012143 415 SAVNVAKECLLAALKADPKAAHIWANLANA 444 (470)
Q Consensus 415 ~~~~~A~~~~~~al~~~p~~~~~~~~la~~ 444 (470)
|+++.|...|++++...|.++.+|...+..
T Consensus 1 ~~~~~~r~i~e~~l~~~~~~~~~W~~y~~~ 30 (33)
T smart00386 1 GDIERARKIYERALEKFPKSVELWLKYAEF 30 (33)
T ss_pred CcHHHHHHHHHHHHHHCCCChHHHHHHHHH
Confidence 457889999999999999999999887654
|
Present in several RNA-binding proteins. Structurally and sequentially thought to be similar to TPRs. |
| >COG4455 ImpE Protein of avirulence locus involved in temperature-dependent protein secretion [General function prediction only] | Back alignment and domain information |
|---|
Probab=88.87 E-value=1.7 Score=35.51 Aligned_cols=57 Identities=14% Similarity=0.268 Sum_probs=38.5
Q ss_pred cCcccHHHHHHHHHHhhhcCccchHHHHHHHHHHHHcCChHHHHHHHHHHhhcCCCC
Q 012143 143 LEPEELEEILSKLKESMQSDTRQAVVWNTLGLILLKSGRLQSSISVLSSLLAVDPNN 199 (470)
Q Consensus 143 ~~~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~ 199 (470)
++.+.+.+++...+.-++..|.+......+-.++.-.|+|++|...++-+-.+.|++
T Consensus 12 L~~~sL~dai~~a~~qVkakPtda~~RhflfqLlcvaGdw~kAl~Ql~l~a~l~p~~ 68 (273)
T COG4455 12 LDDNSLQDAIGLARDQVKAKPTDAGGRHFLFQLLCVAGDWEKALAQLNLAATLSPQD 68 (273)
T ss_pred HHhccHHHHHHHHHHHHhcCCccccchhHHHHHHhhcchHHHHHHHHHHHhhcCccc
Confidence 455566677777777777777766666666666667777777777776666666654
|
|
| >PF10373 EST1_DNA_bind: Est1 DNA/RNA binding domain; InterPro: IPR018834 Est1 is a protein which recruits or activates telomerase at the site of polymerisation [, ] | Back alignment and domain information |
|---|
Probab=88.52 E-value=2.2 Score=37.29 Aligned_cols=62 Identities=13% Similarity=0.045 Sum_probs=53.4
Q ss_pred HHHHHHHhhhcCccchHHHHHHHHHHHHcCChHHHHHHHHHHhhcCCCChHHHHHHHHHHHH
Q 012143 151 ILSKLKESMQSDTRQAVVWNTLGLILLKSGRLQSSISVLSSLLAVDPNNCDCIGNLGIAYFQ 212 (470)
Q Consensus 151 A~~~~~~~~~~~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~la~~~~~ 212 (470)
|+.+|.+|+...|.+...+..+|.++...|+.-.|+-+|-+++......+.+..++...+.+
T Consensus 1 A~~~Y~~A~~l~P~~G~p~nQLAvl~~~~~~~l~avy~y~Rsl~~~~Pf~~A~~NL~~lf~~ 62 (278)
T PF10373_consen 1 AERYYRKAIRLLPSNGNPYNQLAVLASYQGDDLDAVYYYIRSLAVRIPFPSARENLQKLFEK 62 (278)
T ss_dssp HHHHHHHHHHH-TTBSHHHHHHHHHHHHTT-HHHHHHHHHHHHSSSB--HHHHHHHHHHHHH
T ss_pred CHHHHHHHHHhCCCCCCcccchhhhhccccchHHHHHHHHHHHhcCCCcHHHHHHHHHHHHH
Confidence 67899999999999999999999999999999999999999998766668888888888877
|
This is the DNA/RNA binding domain of EST1 []. ; PDB: 1YA0_B. |
| >PF12854 PPR_1: PPR repeat | Back alignment and domain information |
|---|
Probab=88.34 E-value=1.3 Score=24.03 Aligned_cols=28 Identities=14% Similarity=0.070 Sum_probs=24.8
Q ss_pred CChhHHHHHHHHHHHhCChhHHHHHHHH
Q 012143 73 KNAHAHFLLGLMYQRLGQPLKAVSSYEK 100 (470)
Q Consensus 73 ~~~~~~~~l~~~~~~~g~~~~A~~~~~~ 100 (470)
.+...|..+-..+.+.|+.++|.+.|++
T Consensus 5 Pd~~ty~~lI~~~Ck~G~~~~A~~l~~~ 32 (34)
T PF12854_consen 5 PDVVTYNTLIDGYCKAGRVDEAFELFDE 32 (34)
T ss_pred CcHhHHHHHHHHHHHCCCHHHHHHHHHh
Confidence 3567888999999999999999999986
|
|
| >cd02682 MIT_AAA_Arch MIT: domain contained within Microtubule Interacting and Trafficking molecules | Back alignment and domain information |
|---|
Probab=88.30 E-value=3.9 Score=27.09 Aligned_cols=50 Identities=16% Similarity=0.030 Sum_probs=34.9
Q ss_pred HHHHHHHHHHhccccHHHHHHHHHHHhcchhhhhHhhHHHHHHHhccHHHHHHHHHHHHhcCCCcHHHHHHHHHH
Q 012143 370 IAWAGFAAVQKTHHEVAAAFETEENELSKMEECAGAGESAFLDQASAVNVAKECLLAALKADPKAAHIWANLANA 444 (470)
Q Consensus 370 ~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~ 444 (470)
..+...+.-+...|++.+|+.. |.+|++.+.+++...|+++.-......+
T Consensus 7 ~~~a~~AVe~D~~gr~~eAi~~-------------------------Y~~aIe~L~q~~~~~pD~~~k~~yr~ki 56 (75)
T cd02682 7 RKYAINAVKAEKEGNAEDAITN-------------------------YKKAIEVLSQIVKNYPDSPTRLIYEQMI 56 (75)
T ss_pred HHHHHHHHHHHhcCCHHHHHHH-------------------------HHHHHHHHHHHHHhCCChHHHHHHHHHH
Confidence 3455666677777888888776 4677888888888889887654444444
|
This sub-family of MIT domains is found in mostly archaebacterial AAA-ATPases. The molecular function of the MIT domain is unclear. |
| >smart00386 HAT HAT (Half-A-TPR) repeats | Back alignment and domain information |
|---|
Probab=88.09 E-value=1.7 Score=22.75 Aligned_cols=29 Identities=24% Similarity=0.415 Sum_probs=17.6
Q ss_pred CCHHHHHHHHHHHHhhCCCChHHHHHHHH
Q 012143 214 GDMEQSAKCFQDLILKDQNHPAALINYAA 242 (470)
Q Consensus 214 g~~~~A~~~~~~~l~~~p~~~~~~~~l~~ 242 (470)
|+.+.|...|++++...|.++..|...+.
T Consensus 1 ~~~~~~r~i~e~~l~~~~~~~~~W~~y~~ 29 (33)
T smart00386 1 GDIERARKIYERALEKFPKSVELWLKYAE 29 (33)
T ss_pred CcHHHHHHHHHHHHHHCCCChHHHHHHHH
Confidence 34566666666666666666666655443
|
Present in several RNA-binding proteins. Structurally and sequentially thought to be similar to TPRs. |
| >PF11817 Foie-gras_1: Foie gras liver health family 1; InterPro: IPR021773 Mutating the gene foie gras in zebrafish has been shown to affect development; the mutants develop large, lipid-filled hepatocytes in the liver, resembling those in individuals with fatty liver disease [] | Back alignment and domain information |
|---|
Probab=87.83 E-value=17 Score=31.24 Aligned_cols=75 Identities=12% Similarity=-0.014 Sum_probs=52.8
Q ss_pred HHHHHHHHHHh-cchhhhhHhhHHHHHHHhccHHHHHHHHHHHHhcCCCc------HHHHHHHHHHHHHcCChHHHHHHH
Q 012143 386 AAAFETEENEL-SKMEECAGAGESAFLDQASAVNVAKECLLAALKADPKA------AHIWANLANAYYLTGDHRSSGKCL 458 (470)
Q Consensus 386 ~~A~~~~~~~~-~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~p~~------~~~~~~la~~~~~~g~~~~A~~~~ 458 (470)
..|...|...- ..........+|..|...|++++|+.+|+.+....... ..+...+..|+...|+.+..+.+.
T Consensus 162 ~~A~~~f~~~~~~R~~~~l~~~~A~ey~~~g~~~~A~~~l~~~~~~yr~egW~~l~~~~l~~l~~Ca~~~~~~~~~l~~~ 241 (247)
T PF11817_consen 162 EKAYEQFKKYGQNRMASYLSLEMAEEYFRLGDYDKALKLLEPAASSYRREGWWSLLTEVLWRLLECAKRLGDVEDYLTTS 241 (247)
T ss_pred HHHHHHHHHhccchHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhCCcHHHHHHHHHHHHHHHHHhCCHHHHHHHH
Confidence 34444444322 23333456689999999999999999999997654322 567788889999999988877765
Q ss_pred HH
Q 012143 459 EK 460 (470)
Q Consensus 459 ~~ 460 (470)
-+
T Consensus 242 le 243 (247)
T PF11817_consen 242 LE 243 (247)
T ss_pred HH
Confidence 43
|
Foie-gras protein is long and has several well-defined domains though none of them has a known function. We have annotated this one as the first []. THe C terminus of this region contains TPR repeats. |
| >TIGR03504 FimV_Cterm FimV C-terminal domain | Back alignment and domain information |
|---|
Probab=87.34 E-value=1.5 Score=25.48 Aligned_cols=26 Identities=31% Similarity=0.390 Sum_probs=23.3
Q ss_pred HHHHHHHHHcCChhHHHHHHHHHHhc
Q 012143 293 ANLANAYYLTGDHRSSGKCLEKAAKL 318 (470)
Q Consensus 293 ~~la~~~~~~g~~~~A~~~~~~a~~~ 318 (470)
+.+|.+|..+|+.+.|...++.++..
T Consensus 3 LdLA~ayie~Gd~e~Ar~lL~evl~~ 28 (44)
T TIGR03504 3 LDLARAYIEMGDLEGARELLEEVIEE 28 (44)
T ss_pred hHHHHHHHHcCChHHHHHHHHHHHHc
Confidence 57899999999999999999999953
|
This protein is found at the extreme C-terminus of FimV from Pseudomonas aeruginosa, and of TspA of Neisseria meningitidis. Disruption of the former blocks twitching motility from type IV pili; Semmler, et al. suggest a role in peptidoglycan layer remodelling required by type IV fimbrial systems. |
| >KOG1463 consensus 26S proteasome regulatory complex, subunit RPN6/PSMD11 [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=87.23 E-value=21 Score=31.68 Aligned_cols=87 Identities=13% Similarity=-0.068 Sum_probs=41.8
Q ss_pred HHHHHHhccccHHHHHHHHHHHhcc-----hhhhhHh---hHHHHHHHhccHHH--HHHHHHHHHhcCCCcHHHHHHHHH
Q 012143 374 GFAAVQKTHHEVAAAFETEENELSK-----MEECAGA---GESAFLDQASAVNV--AKECLLAALKADPKAAHIWANLAN 443 (470)
Q Consensus 374 ~l~~~~~~~~~~~~A~~~~~~~~~~-----~~~~~~~---~l~~~~~~~~~~~~--A~~~~~~al~~~p~~~~~~~~la~ 443 (470)
.-|..+....+|..|...|-.+... .+..+.. .+-.|-...+..++ ++-.-+.+++....+.++....+.
T Consensus 214 qSGIlha~ekDykTafSYFyEAfEgf~s~~~~v~A~~sLKYMlLcKIMln~~ddv~~lls~K~~l~y~g~~i~AmkavAe 293 (411)
T KOG1463|consen 214 QSGILHAAEKDYKTAFSYFYEAFEGFDSLDDDVKALTSLKYMLLCKIMLNLPDDVAALLSAKLALKYAGRDIDAMKAVAE 293 (411)
T ss_pred hccceeecccccchHHHHHHHHHccccccCCcHHHHHHHHHHHHHHHHhcCHHHHHHHHhhHHHHhccCcchHHHHHHHH
Confidence 3455555666777777776664441 1112211 11112223333333 233334455555555666666666
Q ss_pred HHHH--cCChHHHHHHHHH
Q 012143 444 AYYL--TGDHRSSGKCLEK 460 (470)
Q Consensus 444 ~~~~--~g~~~~A~~~~~~ 460 (470)
.+.. +.+++.|+..|+.
T Consensus 294 A~~nRSLkdF~~AL~~yk~ 312 (411)
T KOG1463|consen 294 AFGNRSLKDFEKALADYKK 312 (411)
T ss_pred HhcCCcHHHHHHHHHHhHH
Confidence 6532 3455555555554
|
|
| >COG4455 ImpE Protein of avirulence locus involved in temperature-dependent protein secretion [General function prediction only] | Back alignment and domain information |
|---|
Probab=87.17 E-value=14 Score=30.44 Aligned_cols=64 Identities=16% Similarity=0.098 Sum_probs=57.7
Q ss_pred HHHHHHcCChHHHHHHHHHHhhcCCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCChHH
Q 012143 173 GLILLKSGRLQSSISVLSSLLAVDPNNCDCIGNLGIAYFQSGDMEQSAKCFQDLILKDQNHPAA 236 (470)
Q Consensus 173 ~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~ 236 (470)
..-+.+.+...+|+...+.-++..|.+......+-.++.-.|+|++|..-++-+-++.|+...-
T Consensus 8 ~seLL~~~sL~dai~~a~~qVkakPtda~~RhflfqLlcvaGdw~kAl~Ql~l~a~l~p~~t~~ 71 (273)
T COG4455 8 ISELLDDNSLQDAIGLARDQVKAKPTDAGGRHFLFQLLCVAGDWEKALAQLNLAATLSPQDTVG 71 (273)
T ss_pred HHHHHHhccHHHHHHHHHHHHhcCCccccchhHHHHHHhhcchHHHHHHHHHHHhhcCcccchH
Confidence 3456778899999999999999999999999999999999999999999999999999987643
|
|
| >PF12854 PPR_1: PPR repeat | Back alignment and domain information |
|---|
Probab=87.11 E-value=2.1 Score=23.18 Aligned_cols=26 Identities=15% Similarity=0.309 Sum_probs=15.6
Q ss_pred hHHHHHHHHHHHHcCCHHHHHHHHHH
Q 012143 200 CDCIGNLGIAYFQSGDMEQSAKCFQD 225 (470)
Q Consensus 200 ~~~~~~la~~~~~~g~~~~A~~~~~~ 225 (470)
...|..+...+.+.|+.++|.+.|++
T Consensus 7 ~~ty~~lI~~~Ck~G~~~~A~~l~~~ 32 (34)
T PF12854_consen 7 VVTYNTLIDGYCKAGRVDEAFELFDE 32 (34)
T ss_pred HhHHHHHHHHHHHCCCHHHHHHHHHh
Confidence 44555666666666666666666554
|
|
| >KOG2422 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=87.02 E-value=29 Score=33.21 Aligned_cols=178 Identities=16% Similarity=0.112 Sum_probs=109.7
Q ss_pred hhcChhhHHHHHHHHHHh------------CCCChhHHHHHHHHHHHhCChhHHHHHHHHHHHHHhhhhcccchhhhHHH
Q 012143 53 REEKVSSLKTGLVHVARK------------MPKNAHAHFLLGLMYQRLGQPLKAVSSYEKAEEILLRCEADIARPELLSL 120 (470)
Q Consensus 53 ~~~~~~~A~~~~~~~l~~------------~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~ 120 (470)
....|+++...|.-+... .|-+.+.+..++.+...+|+.+-|....++++=....
T Consensus 250 hs~sYeqaq~~F~~av~~~d~n~v~~lL~ssPYHvdsLLqva~~~r~qgD~e~aadLieR~Ly~~d~------------- 316 (665)
T KOG2422|consen 250 HSNSYEQAQRDFYLAVIVHDPNNVLILLISSPYHVDSLLQVADIFRFQGDREMAADLIERGLYVFDR------------- 316 (665)
T ss_pred cchHHHHHHHHHHHHHhhcCCcceeeeeccCCcchhHHHHHHHHHHHhcchhhHHHHHHHHHHHHHH-------------
Confidence 456678888888766543 3566778999999999999999999999888753210
Q ss_pred HHHhhhccccccccCCCccccccCcccHHHHHHHHHHhhhcCccch---HHHHHHHHHHHHcCChHHHHHHHHHHhhcCC
Q 012143 121 VQIHHAQCLLPESSGDNSLDKELEPEELEEILSKLKESMQSDTRQA---VVWNTLGLILLKSGRLQSSISVLSSLLAVDP 197 (470)
Q Consensus 121 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~p~~~---~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~ 197 (470)
++...-... .|.. +.-=..|.|- .+++..-..+.+.|-+..|.++++-.+.++|
T Consensus 317 --a~hp~F~~~--sg~c-------------------RL~y~~~eNR~FyL~l~r~m~~l~~RGC~rTA~E~cKlllsLdp 373 (665)
T KOG2422|consen 317 --ALHPNFIPF--SGNC-------------------RLPYIYPENRQFYLALFRYMQSLAQRGCWRTALEWCKLLLSLDP 373 (665)
T ss_pred --Hhccccccc--cccc-------------------cCcccchhhHHHHHHHHHHHHHHHhcCChHHHHHHHHHHhhcCC
Confidence 011100000 0000 0000123332 2344445566788999999999999999999
Q ss_pred C-ChHHHHHHHHHHH-HcCCHHHHHHHHHHH-----HhhCCCChHHHHHHHHHHHhhhcccccccccchhhhhHHHhcC-
Q 012143 198 N-NCDCIGNLGIAYF-QSGDMEQSAKCFQDL-----ILKDQNHPAALINYAALLLCKYGSVLAGAGANTGEGACLDQAS- 269 (470)
Q Consensus 198 ~-~~~~~~~la~~~~-~~g~~~~A~~~~~~~-----l~~~p~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~- 269 (470)
. +|-+...+..+|. +..+|.=-++.++.. +..-|+... -..++..+..+ ..
T Consensus 374 ~eDPl~~l~~ID~~ALrareYqwiI~~~~~~e~~n~l~~~PN~~y-S~AlA~f~l~~--------------------~~~ 432 (665)
T KOG2422|consen 374 SEDPLGILYLIDIYALRAREYQWIIELSNEPENMNKLSQLPNFGY-SLALARFFLRK--------------------NEE 432 (665)
T ss_pred cCCchhHHHHHHHHHHHHHhHHHHHHHHHHHHhhccHhhcCCchH-HHHHHHHHHhc--------------------CCh
Confidence 8 8877776666664 455666566665554 233454432 23445555421 22
Q ss_pred -CHHHHHHHHHHHHhcCCC
Q 012143 270 -AVNVAKECLLAALKADPK 287 (470)
Q Consensus 270 -~~~~A~~~~~~~~~~~p~ 287 (470)
.-..|...+.+|+...|.
T Consensus 433 ~~rqsa~~~l~qAl~~~P~ 451 (665)
T KOG2422|consen 433 DDRQSALNALLQALKHHPL 451 (665)
T ss_pred hhHHHHHHHHHHHHHhCcH
Confidence 256788888888888773
|
|
| >KOG4279 consensus Serine/threonine protein kinase [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=86.91 E-value=11 Score=37.13 Aligned_cols=188 Identities=15% Similarity=0.123 Sum_probs=106.8
Q ss_pred ChhHHHHHHHHHHHhCChhHHHHHHHHHHHHHhhhhcccchhhhHHHHHH---hhhccccccccCCCccccccCcccHHH
Q 012143 74 NAHAHFLLGLMYQRLGQPLKAVSSYEKAEEILLRCEADIARPELLSLVQI---HHAQCLLPESSGDNSLDKELEPEELEE 150 (470)
Q Consensus 74 ~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~ 150 (470)
.++.-..+-..|....+|+.-+.+.+..-.+ |+....+.. .+..+.++... -+.|+-++
T Consensus 200 ~~d~V~nlmlSyRDvQdY~amirLVe~Lk~i----------P~t~~vve~~nv~f~YaFALNRR--------Nr~GDRak 261 (1226)
T KOG4279|consen 200 HPDTVSNLMLSYRDVQDYDAMIRLVEDLKRI----------PDTLKVVETHNVRFHYAFALNRR--------NRPGDRAK 261 (1226)
T ss_pred CHHHHHHHHhhhccccchHHHHHHHHHHHhC----------cchhhhhccCceEEEeeehhccc--------CCCccHHH
Confidence 3556667777777788888777776655443 322222222 22333333332 35588999
Q ss_pred HHHHHHHhhhcC-ccchHHHHHHHHHHHH---------cCChHHHHHHHHHHhhcCCCChHHHHHHHHHHHHcCC-HHHH
Q 012143 151 ILSKLKESMQSD-TRQAVVWNTLGLILLK---------SGRLQSSISVLSSLLAVDPNNCDCIGNLGIAYFQSGD-MEQS 219 (470)
Q Consensus 151 A~~~~~~~~~~~-p~~~~~~~~l~~~~~~---------~~~~~~A~~~~~~a~~~~~~~~~~~~~la~~~~~~g~-~~~A 219 (470)
|+...-.+++.. |-.++.+...|.+|-. .+..+.|+.+|+++++..|.... =.+++.++...|+ ++..
T Consensus 262 AL~~~l~lve~eg~vapDm~Cl~GRIYKDmF~~S~ytDa~s~~~a~~WyrkaFeveP~~~s-GIN~atLL~aaG~~Fens 340 (1226)
T KOG4279|consen 262 ALNTVLPLVEKEGPVAPDMYCLCGRIYKDMFIASNYTDAESLNHAIEWYRKAFEVEPLEYS-GINLATLLRAAGEHFENS 340 (1226)
T ss_pred HHHHHHHHHHhcCCCCCceeeeechhhhhhhhccCCcchhhHHHHHHHHHHHhccCchhhc-cccHHHHHHHhhhhccch
Confidence 999988887754 4556777777777754 35678899999999999987432 2455555555543 3333
Q ss_pred HHHHHHHHhhCC-----CChH---HHHHHHHHHHhhhcccccccccchhhhhHHHhcCCHHHHHHHHHHHHhcCCCCHHH
Q 012143 220 AKCFQDLILKDQ-----NHPA---ALINYAALLLCKYGSVLAGAGANTGEGACLDQASAVNVAKECLLAALKADPKAAHI 291 (470)
Q Consensus 220 ~~~~~~~l~~~p-----~~~~---~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~ 291 (470)
.+.-.-.+.++. .... .+...|..+. +-.-.+++.+|+..-+...++.|-....
T Consensus 341 ~Elq~IgmkLn~LlgrKG~leklq~YWdV~~y~~------------------asVLAnd~~kaiqAae~mfKLk~P~WYL 402 (1226)
T KOG4279|consen 341 LELQQIGMKLNSLLGRKGALEKLQEYWDVATYFE------------------ASVLANDYQKAIQAAEMMFKLKPPVWYL 402 (1226)
T ss_pred HHHHHHHHHHHHHhhccchHHHHHHHHhHHHhhh------------------hhhhccCHHHHHHHHHHHhccCCceehH
Confidence 333222222211 1111 1111111111 1113678888888888888887764433
Q ss_pred HHHHHHH
Q 012143 292 WANLANA 298 (470)
Q Consensus 292 ~~~la~~ 298 (470)
-..+..+
T Consensus 403 kS~meni 409 (1226)
T KOG4279|consen 403 KSTMENI 409 (1226)
T ss_pred HHHHHHH
Confidence 3334333
|
|
| >KOG0546 consensus HSP90 co-chaperone CPR7/Cyclophilin [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=86.16 E-value=1.4 Score=38.67 Aligned_cols=78 Identities=13% Similarity=0.029 Sum_probs=65.6
Q ss_pred hHHHHHHHHHHHHcCChHHHHHHHHHHhhcCCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCChHHHHHHHHH
Q 012143 166 AVVWNTLGLILLKSGRLQSSISVLSSLLAVDPNNCDCIGNLGIAYFQSGDMEQSAKCFQDLILKDQNHPAALINYAAL 243 (470)
Q Consensus 166 ~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~l~~~ 243 (470)
.....+++.+-...+.+..|+..-..++..++....+++..+..+....++++|++.++.+....|++......+..+
T Consensus 275 ~~~~~n~~~~~lk~~~~~~a~~~~~~~~~~~~s~tka~~Rr~~~~~~~~~~~~a~~~~~~a~~~~p~d~~i~~~~~~~ 352 (372)
T KOG0546|consen 275 FSIRRNLAAVGLKVKGRGGARFRTNEALRDERSKTKAHYRRGQAYKLLKNYDEALEDLKKAKQKAPNDKAIEEELENV 352 (372)
T ss_pred cccccchHHhcccccCCCcceeccccccccChhhCcHHHHHHhHHHhhhchhhhHHHHHHhhccCcchHHHHHHHHHh
Confidence 344555788888899999999988888888888899999999999999999999999999999999888765555444
|
|
| >KOG0276 consensus Vesicle coat complex COPI, beta' subunit [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=85.53 E-value=5.8 Score=37.82 Aligned_cols=80 Identities=24% Similarity=0.363 Sum_probs=57.4
Q ss_pred ccCcccHHHHHHHHHHhhhcCccchHHHHHHHHHHHHcCChHHHHHHHHHHhhcC--------CCChHHHHHHH------
Q 012143 142 ELEPEELEEILSKLKESMQSDTRQAVVWNTLGLILLKSGRLQSSISVLSSLLAVD--------PNNCDCIGNLG------ 207 (470)
Q Consensus 142 ~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~--------~~~~~~~~~la------ 207 (470)
.++.|+++.|.++..++ ++..-|..||.+....|++..|.++|.++-... ..+.+.+..+|
T Consensus 647 al~lgrl~iA~~la~e~-----~s~~Kw~~Lg~~al~~~~l~lA~EC~~~a~d~~~LlLl~t~~g~~~~l~~la~~~~~~ 721 (794)
T KOG0276|consen 647 ALKLGRLDIAFDLAVEA-----NSEVKWRQLGDAALSAGELPLASECFLRARDLGSLLLLYTSSGNAEGLAVLASLAKKQ 721 (794)
T ss_pred hhhcCcHHHHHHHHHhh-----cchHHHHHHHHHHhhcccchhHHHHHHhhcchhhhhhhhhhcCChhHHHHHHHHHHhh
Confidence 45778888888876654 556789999999999999999999999986542 23344344343
Q ss_pred -------HHHHHcCCHHHHHHHHHHH
Q 012143 208 -------IAYFQSGDMEQSAKCFQDL 226 (470)
Q Consensus 208 -------~~~~~~g~~~~A~~~~~~~ 226 (470)
.+|+..|+++++.+.+...
T Consensus 722 g~~N~AF~~~~l~g~~~~C~~lLi~t 747 (794)
T KOG0276|consen 722 GKNNLAFLAYFLSGDYEECLELLIST 747 (794)
T ss_pred cccchHHHHHHHcCCHHHHHHHHHhc
Confidence 3556677777777766554
|
|
| >PF10255 Paf67: RNA polymerase I-associated factor PAF67; InterPro: IPR019382 RNA polymerase I is a multi-subunit enzyme and its transcription competence is dependent on the presence of PAF67 [] | Back alignment and domain information |
|---|
Probab=85.16 E-value=20 Score=33.13 Aligned_cols=57 Identities=7% Similarity=-0.124 Sum_probs=45.1
Q ss_pred hhhHHHhcCCHHHHHHHHHHHH-------hc-CCCCHHHHHHHHHHHHHcCChhHHHHHHHHHHh
Q 012143 261 EGACLDQASAVNVAKECLLAAL-------KA-DPKAAHIWANLANAYYLTGDHRSSGKCLEKAAK 317 (470)
Q Consensus 261 ~~~~~~~~~~~~~A~~~~~~~~-------~~-~p~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~ 317 (470)
+.+++.-.|+|..|++.++-.- .. .+-...+++.+|-+|..+++|.+|++.|..++-
T Consensus 128 LlRvh~LLGDY~~Alk~l~~idl~~~~l~~~V~~~~is~~YyvGFaylMlrRY~DAir~f~~iL~ 192 (404)
T PF10255_consen 128 LLRVHCLLGDYYQALKVLENIDLNKKGLYTKVPACHISTYYYVGFAYLMLRRYADAIRTFSQILL 192 (404)
T ss_pred HHHHHHhccCHHHHHHHhhccCcccchhhccCcchheehHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4567778999999999887431 11 122567889999999999999999999998874
|
|
| >KOG2581 consensus 26S proteasome regulatory complex, subunit RPN3/PSMD3 [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=84.43 E-value=32 Score=31.36 Aligned_cols=66 Identities=11% Similarity=-0.109 Sum_probs=42.3
Q ss_pred HHHHHHHHHHHhccccHHHHHHHHHHHhcc------hhhhhHhhHHHHHHHhccHHHHHHHHHHHHhcCCCc
Q 012143 369 PIAWAGFAAVQKTHHEVAAAFETEENELSK------MEECAGAGESAFLDQASAVNVAKECLLAALKADPKA 434 (470)
Q Consensus 369 ~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~------~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~p~~ 434 (470)
+...+.+-..|...+.++.|-....+..-| ......+.+|.+..-.++|..|.++|-+|+...|++
T Consensus 209 avLiN~LLr~yL~n~lydqa~~lvsK~~~pe~~snne~ARY~yY~GrIkaiqldYssA~~~~~qa~rkapq~ 280 (493)
T KOG2581|consen 209 AVLINLLLRNYLHNKLYDQADKLVSKSVYPEAASNNEWARYLYYLGRIKAIQLDYSSALEYFLQALRKAPQH 280 (493)
T ss_pred HHHHHHHHHHHhhhHHHHHHHHHhhcccCccccccHHHHHHHHHHhhHHHhhcchhHHHHHHHHHHHhCcch
Confidence 344555666667777777777666664322 222345567777777777777777777777777764
|
|
| >PF10255 Paf67: RNA polymerase I-associated factor PAF67; InterPro: IPR019382 RNA polymerase I is a multi-subunit enzyme and its transcription competence is dependent on the presence of PAF67 [] | Back alignment and domain information |
|---|
Probab=84.35 E-value=20 Score=33.03 Aligned_cols=59 Identities=14% Similarity=-0.048 Sum_probs=40.1
Q ss_pred HHHHHHHHHhccccHHHHHHHHHH-Hhc---------chhhhhHhhHHHHHHHhccHHHHHHHHHHHHh
Q 012143 371 AWAGFAAVQKTHHEVAAAFETEEN-ELS---------KMEECAGAGESAFLDQASAVNVAKECLLAALK 429 (470)
Q Consensus 371 ~~~~l~~~~~~~~~~~~A~~~~~~-~~~---------~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~ 429 (470)
....+..++.-.|+|..|++.... .++ +.....++.+|-+|..+++|.+|+..|..++-
T Consensus 124 SligLlRvh~LLGDY~~Alk~l~~idl~~~~l~~~V~~~~is~~YyvGFaylMlrRY~DAir~f~~iL~ 192 (404)
T PF10255_consen 124 SLIGLLRVHCLLGDYYQALKVLENIDLNKKGLYTKVPACHISTYYYVGFAYLMLRRYADAIRTFSQILL 192 (404)
T ss_pred HHHHHHHHHHhccCHHHHHHHhhccCcccchhhccCcchheehHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 445666777778888888877665 111 22224567788888888888888888877663
|
|
| >PF11817 Foie-gras_1: Foie gras liver health family 1; InterPro: IPR021773 Mutating the gene foie gras in zebrafish has been shown to affect development; the mutants develop large, lipid-filled hepatocytes in the liver, resembling those in individuals with fatty liver disease [] | Back alignment and domain information |
|---|
Probab=83.55 E-value=28 Score=29.89 Aligned_cols=55 Identities=11% Similarity=-0.072 Sum_probs=37.6
Q ss_pred hhhHHHhcCCHHHHHHHHHHHHhcCCC------CHHHHHHHHHHHHHcCChhHHHHHHHHH
Q 012143 261 EGACLDQASAVNVAKECLLAALKADPK------AAHIWANLANAYYLTGDHRSSGKCLEKA 315 (470)
Q Consensus 261 ~~~~~~~~~~~~~A~~~~~~~~~~~p~------~~~~~~~la~~~~~~g~~~~A~~~~~~a 315 (470)
+|..|...|++++|+++|+.+...... ...+...+..|+...|+.+..+.+.-+.
T Consensus 184 ~A~ey~~~g~~~~A~~~l~~~~~~yr~egW~~l~~~~l~~l~~Ca~~~~~~~~~l~~~leL 244 (247)
T PF11817_consen 184 MAEEYFRLGDYDKALKLLEPAASSYRREGWWSLLTEVLWRLLECAKRLGDVEDYLTTSLEL 244 (247)
T ss_pred HHHHHHHCCCHHHHHHHHHHHHHHHHhCCcHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHH
Confidence 466666888888888888888654332 3456667777888888877766655443
|
Foie-gras protein is long and has several well-defined domains though none of them has a known function. We have annotated this one as the first []. THe C terminus of this region contains TPR repeats. |
| >PF12739 TRAPPC-Trs85: ER-Golgi trafficking TRAPP I complex 85 kDa subunit; InterPro: IPR024420 This entry represents Trs85, a subunit of the TRAPP III complex [] | Back alignment and domain information |
|---|
Probab=83.31 E-value=40 Score=31.61 Aligned_cols=113 Identities=15% Similarity=-0.050 Sum_probs=59.2
Q ss_pred HHHHHHHHHHHhCChhHHHHHHHHHHHHHhhhhcccchhhhHHHHHHhhhccccccccCCCcc---ccccCcccHHHHHH
Q 012143 77 AHFLLGLMYQRLGQPLKAVSSYEKAEEILLRCEADIARPELLSLVQIHHAQCLLPESSGDNSL---DKELEPEELEEILS 153 (470)
Q Consensus 77 ~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~A~~ 153 (470)
....+|..++-.|+|+-|...|+.+.+-...+.... ..+.+....+.++...+.... ..-.-..-++.|..
T Consensus 210 q~R~LAD~aFml~Dy~~A~s~Y~~~k~Df~~Dkaw~------~~A~~~Em~alsl~~~~~~~~~k~~~~~~~~~le~A~~ 283 (414)
T PF12739_consen 210 QMRRLADLAFMLRDYELAYSTYRLLKKDFKNDKAWK------YLAGAQEMAALSLLMQGQSISAKIRKDEIEPYLENAYY 283 (414)
T ss_pred HHHHHHHHHHHHccHHHHHHHHHHHHHHHhhchhHH------HHHhHHHHHHHHHHhcCCCCccccccccHHHHHHHHHH
Confidence 456799999999999999999999887443322221 122222222222222221100 00001123455555
Q ss_pred HHHHh----hhcCccchHHHHHHHHHHHHcCChHHHHHHHHHHhhc
Q 012143 154 KLKES----MQSDTRQAVVWNTLGLILLKSGRLQSSISVLSSLLAV 195 (470)
Q Consensus 154 ~~~~~----~~~~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~ 195 (470)
.|.+. ....+.-..+....+.++...|.+.+|...+-+....
T Consensus 284 ~Y~~~~~~~~~~~~~a~R~~ll~~ell~~~~~~~~a~~~~~~~~~~ 329 (414)
T PF12739_consen 284 TYLKSALPRCSLPYYALRCALLLAELLKSRGGYWEAADQLIRWTSE 329 (414)
T ss_pred HHHhhhccccccccchHHHHHHHHHHHHhcCccHHHHHHHHHHHHH
Confidence 56552 1111223345556677777777777777666655543
|
Trs85 is a multimeric guanine nucleotide-exchange factor for Ypt1, required for membrane expansion during autophagy and the CVT pathway. It directs Ypt1 to the phagophore assembly site [, , , ]. |
| >PF11846 DUF3366: Domain of unknown function (DUF3366); InterPro: IPR021797 This domain is functionally uncharacterised | Back alignment and domain information |
|---|
Probab=82.55 E-value=5.4 Score=32.62 Aligned_cols=49 Identities=20% Similarity=0.276 Sum_probs=39.4
Q ss_pred HHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHcCChHHHHHHHHHHHHhhc
Q 012143 417 VNVAKECLLAALKADPKAAHIWANLANAYYLTGDHRSSGKCLEKVLMVYC 466 (470)
Q Consensus 417 ~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~ 466 (470)
.+..++..++.+...| ++.++.+++.++...|+.++|.....++..++|
T Consensus 127 l~~~~~~a~~~l~~~P-~~~~~~~~a~~l~~~G~~~eA~~~~~~~~~lyP 175 (193)
T PF11846_consen 127 LEAYIEWAERLLRRRP-DPNVYQRYALALALLGDPEEARQWLARARRLYP 175 (193)
T ss_pred HHHHHHHHHHHHHhCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC
Confidence 4556667777777777 577888888888899999999888888888887
|
This domain is found in bacteria. This presumed domain is about 200 amino acids in length. |
| >KOG0276 consensus Vesicle coat complex COPI, beta' subunit [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=82.36 E-value=17 Score=34.89 Aligned_cols=68 Identities=16% Similarity=0.092 Sum_probs=50.7
Q ss_pred HHHHHHHhcCCCCcchhhhcccchhhhhcChhhHHHHHHHHHHhCCCChhHHHHHHHHHHHhCChhHHHHHHHHHHHH
Q 012143 27 SKMDSALEFGVDADGDQSGLGTSSSSREEKVSSLKTGLVHVARKMPKNAHAHFLLGLMYQRLGQPLKAVSSYEKAEEI 104 (470)
Q Consensus 27 ~~~~~~l~~~p~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~ 104 (470)
...+++|++.||... .-.+ ..+.|+++.|.+...+ .++..-|-.||......|++..|.++|.++-..
T Consensus 628 g~~e~AL~~s~D~d~----rFel-al~lgrl~iA~~la~e-----~~s~~Kw~~Lg~~al~~~~l~lA~EC~~~a~d~ 695 (794)
T KOG0276|consen 628 GMKEQALELSTDPDQ----RFEL-ALKLGRLDIAFDLAVE-----ANSEVKWRQLGDAALSAGELPLASECFLRARDL 695 (794)
T ss_pred cchHhhhhcCCChhh----hhhh-hhhcCcHHHHHHHHHh-----hcchHHHHHHHHHHhhcccchhHHHHHHhhcch
Confidence 445666777666553 2223 5566788888876654 466788999999999999999999999998764
|
|
| >PF13041 PPR_2: PPR repeat family | Back alignment and domain information |
|---|
Probab=82.18 E-value=4.2 Score=24.30 Aligned_cols=28 Identities=11% Similarity=-0.164 Sum_probs=19.3
Q ss_pred hHhhHHHHHHHhccHHHHHHHHHHHHhc
Q 012143 403 AGAGESAFLDQASAVNVAKECLLAALKA 430 (470)
Q Consensus 403 ~~~~l~~~~~~~~~~~~A~~~~~~al~~ 430 (470)
.|..+-..+.+.|++++|.+.|++..+.
T Consensus 5 ~yn~li~~~~~~~~~~~a~~l~~~M~~~ 32 (50)
T PF13041_consen 5 TYNTLISGYCKAGKFEEALKLFKEMKKR 32 (50)
T ss_pred HHHHHHHHHHHCcCHHHHHHHHHHHHHc
Confidence 4555666777777777777777777664
|
|
| >PF09670 Cas_Cas02710: CRISPR-associated protein (Cas_Cas02710) | Back alignment and domain information |
|---|
Probab=82.00 E-value=30 Score=31.95 Aligned_cols=62 Identities=13% Similarity=0.085 Sum_probs=45.9
Q ss_pred HHHHHHHHHHHcCChHHHHHHHHHHhhcCCCChH--HHHHHHH--HHHHcCCHHHHHHHHHHHHhh
Q 012143 168 VWNTLGLILLKSGRLQSSISVLSSLLAVDPNNCD--CIGNLGI--AYFQSGDMEQSAKCFQDLILK 229 (470)
Q Consensus 168 ~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~--~~~~la~--~~~~~g~~~~A~~~~~~~l~~ 229 (470)
.....+...+..++|..|...+......-|.... .+..+.. -+...-++.+|.+.++..+..
T Consensus 133 ~~~~~a~~l~n~~~y~aA~~~l~~l~~rl~~~~~~~~~~~l~~~y~~WD~fd~~~A~~~l~~~~~~ 198 (379)
T PF09670_consen 133 REWRRAKELFNRYDYGAAARILEELLRRLPGREEYQRYKDLCEGYDAWDRFDHKEALEYLEKLLKR 198 (379)
T ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHHhCCchhhHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHH
Confidence 3445677888999999999999999885333333 4444444 446788999999999998764
|
|
| >KOG1538 consensus Uncharacterized conserved protein WDR10, contains WD40 repeats [General function prediction only] | Back alignment and domain information |
|---|
Probab=81.49 E-value=56 Score=31.97 Aligned_cols=79 Identities=13% Similarity=0.110 Sum_probs=45.3
Q ss_pred ccCcccHHHHHHHHHHhhhcCccchHHHHHHHHHHHHcCChHHHHHHHHHHhhc--------------CCCChHHHHHHH
Q 012143 142 ELEPEELEEILSKLKESMQSDTRQAVVWNTLGLILLKSGRLQSSISVLSSLLAV--------------DPNNCDCIGNLG 207 (470)
Q Consensus 142 ~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~--------------~~~~~~~~~~la 207 (470)
++..|.+++|...---.+. ..-|..++.-....=+++-|.+.|.++-.+ ....| --..+|
T Consensus 566 ~Ieag~f~ea~~iaclgVv-----~~DW~~LA~~ALeAL~f~~ARkAY~rVRdl~~L~li~EL~~~k~rge~P-~~iLlA 639 (1081)
T KOG1538|consen 566 YIERGLFKEAYQIACLGVT-----DTDWRELAMEALEALDFETARKAYIRVRDLRYLELISELEERKKRGETP-NDLLLA 639 (1081)
T ss_pred hhhccchhhhhccccccee-----cchHHHHHHHHHhhhhhHHHHHHHHHHhccHHHHHHHHHHHHHhcCCCc-hHHHHH
Confidence 4566666666543211111 112455565555556677777777665322 11112 235677
Q ss_pred HHHHHcCCHHHHHHHHHHH
Q 012143 208 IAYFQSGDMEQSAKCFQDL 226 (470)
Q Consensus 208 ~~~~~~g~~~~A~~~~~~~ 226 (470)
.++.-.|++.+|.+.|.+.
T Consensus 640 ~~~Ay~gKF~EAAklFk~~ 658 (1081)
T KOG1538|consen 640 DVFAYQGKFHEAAKLFKRS 658 (1081)
T ss_pred HHHHhhhhHHHHHHHHHHc
Confidence 7888889999998888764
|
|
| >PF12753 Nro1: Nuclear pore complex subunit Nro1; InterPro: IPR024318 In fission yeast, Nro1 is a positive regulator of the stability of Sre1N, the sterol regulatory element-binding protein, which is an ER membrane-bound transcription factor that controls adaptation to low oxygen-growth [] | Back alignment and domain information |
|---|
Probab=81.26 E-value=14 Score=33.41 Aligned_cols=32 Identities=25% Similarity=0.364 Sum_probs=24.1
Q ss_pred HHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHcCC
Q 012143 417 VNVAKECLLAALKADPKAAHIWANLANAYYLTGD 450 (470)
Q Consensus 417 ~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~ 450 (470)
+..|+.++++|.. .++|+.|..+|.++..+|+
T Consensus 334 ~~~Al~yL~kA~d--~ddPetWv~vAEa~I~LGN 365 (404)
T PF12753_consen 334 IKKALEYLKKAQD--EDDPETWVDVAEAMIDLGN 365 (404)
T ss_dssp HHHHHHHHHHHHH--S--TTHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhhc--cCChhHHHHHHHHHhhhhc
Confidence 6788888888876 4667888888888877775
|
In addition, the fission yeast Nro1 is a direct inhibitor of a protein that inhibits SreN1 degradation, Ofd1 (an oxoglutamate deoxygenase). The outcome of this reactivity is that Ofd1 acts as an oxygen sensor that regulates the binding of Nro1 to Ofd1 to control the stability of Sre1N []. This entry also represents ETT1, an Nro1 ortholog []. ETT1 is required for correct translation termination and probably involved in regulation of hypoxic gene expression in association TPA1 []. It inhibits replication of Brome mosaic virus [].; GO: 0005515 protein binding, 0005634 nucleus; PDB: 3QTM_B 3MSV_B 3QTN_B. |
| >cd02682 MIT_AAA_Arch MIT: domain contained within Microtubule Interacting and Trafficking molecules | Back alignment and domain information |
|---|
Probab=81.13 E-value=3.9 Score=27.09 Aligned_cols=22 Identities=9% Similarity=0.019 Sum_probs=10.3
Q ss_pred HHHHHHHhccHHHHHHHHHHHH
Q 012143 407 ESAFLDQASAVNVAKECLLAAL 428 (470)
Q Consensus 407 l~~~~~~~~~~~~A~~~~~~al 428 (470)
.|.-+-..|++.+|+.+|++++
T Consensus 12 ~AVe~D~~gr~~eAi~~Y~~aI 33 (75)
T cd02682 12 NAVKAEKEGNAEDAITNYKKAI 33 (75)
T ss_pred HHHHHHhcCCHHHHHHHHHHHH
Confidence 3334444445555555554443
|
This sub-family of MIT domains is found in mostly archaebacterial AAA-ATPases. The molecular function of the MIT domain is unclear. |
| >KOG4014 consensus Uncharacterized conserved protein (contains TPR repeat) [Function unknown] | Back alignment and domain information |
|---|
Probab=80.53 E-value=28 Score=27.87 Aligned_cols=167 Identities=14% Similarity=0.191 Sum_probs=103.8
Q ss_pred cccHHHHHHHHHHhhhcCccchHHHHHHHHHHH-----HcCChHHHHHHHHHHhhcCCCChHHHHHHHHHHHHc-----C
Q 012143 145 PEELEEILSKLKESMQSDTRQAVVWNTLGLILL-----KSGRLQSSISVLSSLLAVDPNNCDCIGNLGIAYFQS-----G 214 (470)
Q Consensus 145 ~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~-----~~~~~~~A~~~~~~a~~~~~~~~~~~~~la~~~~~~-----g 214 (470)
+.+|++|..+|..--..+ ..+...+.+|..++ ..+++..|+..|..+-. .+.+.+...+|.++..- +
T Consensus 48 ~knF~~A~kv~K~nCden-~y~kSCyKyG~y~~~GKgG~~~~l~~a~r~~~~aC~--~n~~~aC~~~gLl~~~g~~~r~~ 124 (248)
T KOG4014|consen 48 QKNFQAAVKVFKKNCDEN-SYPKSCYKYGMYMLAGKGGDDASLSKAIRPMKIACD--ANIPQACRYLGLLHWNGEKDRKA 124 (248)
T ss_pred HHHHHHHHHHHHhccccc-CCcHHHHHhhhhhhcccCCCccCHHHHHHHHHHHhc--cCCHHHHhhhhhhhccCcCCccC
Confidence 356788888887766544 34666667766554 34678999999998866 56788888888887642 2
Q ss_pred --CHHHHHHHHHHHHhhCCCChHHHHHHHHHHHhhhccccc---ccccchhhhhHHHhcCCHHHHHHHHHHHHhcCCCCH
Q 012143 215 --DMEQSAKCFQDLILKDQNHPAALINYAALLLCKYGSVLA---GAGANTGEGACLDQASAVNVAKECLLAALKADPKAA 289 (470)
Q Consensus 215 --~~~~A~~~~~~~l~~~p~~~~~~~~l~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~p~~~ 289 (470)
+..+|..++.++-.++ +..+.+.|...++........ ..+.-...+..+.-..+.+.|.++--++-+++ ++
T Consensus 125 dpd~~Ka~~y~traCdl~--~~~aCf~LS~m~~~g~~k~~t~ap~~g~p~~~~~~~~~~kDMdka~qfa~kACel~--~~ 200 (248)
T KOG4014|consen 125 DPDSEKAERYMTRACDLE--DGEACFLLSTMYMGGKEKFKTNAPGEGKPLDRAELGSLSKDMDKALQFAIKACELD--IP 200 (248)
T ss_pred CCCcHHHHHHHHHhccCC--CchHHHHHHHHHhccchhhcccCCCCCCCcchhhhhhhhHhHHHHHHHHHHHHhcC--Ch
Confidence 3778999999987654 566667777776643222111 11222334445555667777777777776653 35
Q ss_pred HHHHHHHHHHHHc----CChhHHHHHHHHHHhc
Q 012143 290 HIWANLANAYYLT----GDHRSSGKCLEKAAKL 318 (470)
Q Consensus 290 ~~~~~la~~~~~~----g~~~~A~~~~~~a~~~ 318 (470)
.+.-++.+.|..- ++-++|..+-.++.++
T Consensus 201 ~aCAN~SrMyklGDGv~Kde~~Aekyk~rA~e~ 233 (248)
T KOG4014|consen 201 QACANVSRMYKLGDGVPKDEDQAEKYKDRAKEI 233 (248)
T ss_pred HHHhhHHHHHHccCCCCccHHHHHHHHHHHHHH
Confidence 5555665555331 2345565555555543
|
|
| >PF04190 DUF410: Protein of unknown function (DUF410) ; InterPro: IPR007317 This is a family of conserved eukaryotic proteins with undetermined function | Back alignment and domain information |
|---|
Probab=80.35 E-value=38 Score=29.32 Aligned_cols=81 Identities=14% Similarity=-0.002 Sum_probs=51.4
Q ss_pred CCCCcHHHHHHHHHHHhccccHHHHHHHHHHHhcchhhhhHhhHHHHHHHhccHHHHHHH----HHHHHhcCCCcHHHHH
Q 012143 364 VQIEPPIAWAGFAAVQKTHHEVAAAFETEENELSKMEECAGAGESAFLDQASAVNVAKEC----LLAALKADPKAAHIWA 439 (470)
Q Consensus 364 ~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~----~~~al~~~p~~~~~~~ 439 (470)
....+|..+..+|..+.+.+++.+|...+-..-+ .++... +.-..+-.|...+.+.
T Consensus 85 ~~~Gdp~LH~~~a~~~~~e~~~~~A~~Hfl~~~~--------------------~~~~~~~~ll~~~~~~~~~~e~dlfi 144 (260)
T PF04190_consen 85 YKFGDPELHHLLAEKLWKEGNYYEAERHFLLGTD--------------------PSAFAYVMLLEEWSTKGYPSEADLFI 144 (260)
T ss_dssp -TT--HHHHHHHHHHHHHTT-HHHHHHHHHTS-H--------------------HHHHHHHHHHHHHHHHTSS--HHHHH
T ss_pred CCCCCHHHHHHHHHHHHhhccHHHHHHHHHhcCC--------------------hhHHHHHHHHHHHHHhcCCcchhHHH
Confidence 3446788999999999999999888766543221 222111 1222345667777777
Q ss_pred HHHHH-HHHcCChHHHHHHHHHHHHh
Q 012143 440 NLANA-YYLTGDHRSSGKCLEKVLMV 464 (470)
Q Consensus 440 ~la~~-~~~~g~~~~A~~~~~~al~~ 464 (470)
..|.+ |...|+...|...+....+.
T Consensus 145 ~RaVL~yL~l~n~~~A~~~~~~f~~~ 170 (260)
T PF04190_consen 145 ARAVLQYLCLGNLRDANELFDTFTSK 170 (260)
T ss_dssp HHHHHHHHHTTBHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhcCHHHHHHHHHHHHHH
Confidence 77765 57789999999988887776
|
; PDB: 3LKU_E 2WPV_G. |
| >TIGR00756 PPR pentatricopeptide repeat domain (PPR motif) | Back alignment and domain information |
|---|
Probab=80.34 E-value=5 Score=21.21 Aligned_cols=26 Identities=12% Similarity=0.226 Sum_probs=14.1
Q ss_pred HHHHHHHHHHcCChHHHHHHHHHHHH
Q 012143 438 WANLANAYYLTGDHRSSGKCLEKVLM 463 (470)
Q Consensus 438 ~~~la~~~~~~g~~~~A~~~~~~al~ 463 (470)
|..+-..|.+.|++++|.+.|.+..+
T Consensus 3 ~n~li~~~~~~~~~~~a~~~~~~M~~ 28 (35)
T TIGR00756 3 YNTLIDGLCKAGRVEEALELFKEMLE 28 (35)
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHH
Confidence 34444555555666666665555544
|
This family has a similar consensus to the TPR domain (tetratricopeptide), pfam pfam00515, a 33-residue repeat. It is predicted to form a pair of antiparallel helices similar to that of TPR. |
Homologous Structure Templates
Structure Templates Detected by BLAST
Original result of BLAST against Protein Data Bank
| ID | Alignment Graph | Length |
Definition |
E-value | |
| Query | 470 | ||||
| 1na0_A | 125 | Design Of Stable Alpha-Helical Arrays From An Ideal | 1e-04 | ||
| 2fo7_A | 136 | Crystal Structure Of An 8 Repeat Consensus Tpr Supe | 1e-04 |
| >pdb|1NA0|A Chain A, Design Of Stable Alpha-Helical Arrays From An Idealized Tpr Motif Length = 125 | Back alignment and structure |
|
| >pdb|2FO7|A Chain A, Crystal Structure Of An 8 Repeat Consensus Tpr Superhelix (Trigonal Crystal Form) Length = 136 | Back alignment and structure |
|
Structure Templates Detected by RPS-BLAST
Original result of RPS-BLAST against PDB70 database
| >3ieg_A DNAJ homolog subfamily C member 3; TPR motif, chaperone, endoplasmic reticulum, TPR repeat, UNF protein response; 2.51A {Mus musculus} Length = 359 | Back alignment and structure |
|---|
Score = 98.1 bits (245), Expect = 1e-22
Identities = 34/254 (13%), Positives = 80/254 (31%), Gaps = 21/254 (8%)
Query: 72 PKNAHAHFLLGLMYQRLGQPLKAVSSYEKAEEILLRCEADIARPELLSLVQIHHAQCLLP 131
A G + + G+ +A ++K + + LV+ Q L
Sbjct: 68 MDFTAARLQRGHLLLKQGKLDEAEDDFKKV--LKSNPSEQEEKEAESQLVKADEMQRLR- 124
Query: 132 ESSGDNSLDKELEPEELEEILSKLKESMQSDTRQAVVWNTLGLILLKSGRLQSSISVLSS 191
+ + + ++ L + ++ A + +K G + +IS L +
Sbjct: 125 -----SQALDAFDGADYTAAITFLDKILEVCVWDAELRELRAECFIKEGEPRKAISDLKA 179
Query: 192 LLAVDPNNCDCIGNLGIAYFQSGDMEQSAKCFQDLILKDQNHPAALINYAALLLCKYGSV 251
+ +N + + Y+Q GD E S ++ + DQ+H +Y +
Sbjct: 180 ASKLKSDNTEAFYKISTLYYQLGDHELSLSEVRECLKLDQDHKRCFAHYKQVKKLN---- 235
Query: 252 LAGAGANTGEGACLDQASAVNVAKECLLAALKADPKAAHIWA----NLANAYYLTGDHRS 307
L + A + +K +P A + + +
Sbjct: 236 -----KLIESAEELIRDGRYTDATSKYESVMKTEPSVAEYTVRSKERICHCFSKDEKPVE 290
Query: 308 SGKCLEKAAKLEPN 321
+ + + ++EP+
Sbjct: 291 AIRICSEVLQMEPD 304
|
| >3ieg_A DNAJ homolog subfamily C member 3; TPR motif, chaperone, endoplasmic reticulum, TPR repeat, UNF protein response; 2.51A {Mus musculus} Length = 359 | Back alignment and structure |
|---|
Score = 74.2 bits (183), Expect = 1e-14
Identities = 45/325 (13%), Positives = 101/325 (31%), Gaps = 56/325 (17%)
Query: 166 AVVWNTLGLILLKSGRLQSSISVLSSLLAVDPNNCDCIGNLGIAYFQSGDMEQSAKCFQD 225
+ + + L G+ ++++ L+ ++A+ + G + G ++++ F+
Sbjct: 37 YIAYYRRATVFLAMGKSKAALPDLTKVIALKMDFTAARLQRGHLLLKQGKLDEAEDDFKK 96
Query: 226 LILKDQNHPAALINYAALLLCKYGSVLAGAGANTGEG-------ACLDQASAVNV----- 273
++ + + + L+ L + +G LD+ V V
Sbjct: 97 VLKSNPSEQEEKEAESQLVKADEMQRLRSQALDAFDGADYTAAITFLDKILEVCVWDAEL 156
Query: 274 ----------------AKECLLAALKADPKAAHIWANLANAYYLTGDHRSSGKCLEKAAK 317
A L AA K + ++ YY GDH S + + K
Sbjct: 157 RELRAECFIKEGEPRKAISDLKAASKLKSDNTEAFYKISTLYYQLGDHELSLSEVRECLK 216
Query: 318 LEPNCMSTRYAVAVSRIKDAERSQEPTEQLSWAGNEMASILREGDPVQIEPPIAWAGFAA 377
L+ + ++K + E E+L G + + ++ EP +A +
Sbjct: 217 LDQDHKRCFAHYK--QVKKLNKLIESAEELIRDGRYTDATSKYESVMKTEPSVAEYTVRS 274
Query: 378 VQKTHHEVAAAFETEENELSKMEECAGAGESAFLDQASAVNVAKECLLAALKADPKAAHI 437
+ F ++ K E A L+ +P +
Sbjct: 275 ----KERICHCF----SKDEKPVE------------------AIRICSEVLQMEPDNVNA 308
Query: 438 WANLANAYYLTGDHRSSGKCLEKVL 462
+ A AY + + + + E
Sbjct: 309 LKDRAEAYLIEEMYDEAIQDYEAAQ 333
|
| >3ieg_A DNAJ homolog subfamily C member 3; TPR motif, chaperone, endoplasmic reticulum, TPR repeat, UNF protein response; 2.51A {Mus musculus} Length = 359 | Back alignment and structure |
|---|
Score = 68.5 bits (168), Expect = 8e-13
Identities = 31/181 (17%), Positives = 58/181 (32%), Gaps = 28/181 (15%)
Query: 169 WNTLGLILLKSGRLQSSISVLSSLLAVDPNNCDCIGNLGIAYFQSGDMEQSAKCFQDLIL 228
LG LL +G+L ++S + + DP+N + G + + +I
Sbjct: 6 HLELGKKLLAAGQLADALSQFHAAVDGDPDNYIAYYRRATVFLAMGKSKAALPDLTKVIA 65
Query: 229 KDQNHPAALINYAALLLCK---------YGSVL------AGAGANTGEGACLDQASAVNV 273
+ AA + LLL + + VL + D+ +
Sbjct: 66 LKMDFTAARLQRGHLLLKQGKLDEAEDDFKKVLKSNPSEQEEKEAESQLVKADEMQRLRS 125
Query: 274 -------------AKECLLAALKADPKAAHIWANLANAYYLTGDHRSSGKCLEKAAKLEP 320
A L L+ A + A + G+ R + L+ A+KL+
Sbjct: 126 QALDAFDGADYTAAITFLDKILEVCVWDAELRELRAECFIKEGEPRKAISDLKAASKLKS 185
Query: 321 N 321
+
Sbjct: 186 D 186
|
| >3ieg_A DNAJ homolog subfamily C member 3; TPR motif, chaperone, endoplasmic reticulum, TPR repeat, UNF protein response; 2.51A {Mus musculus} Length = 359 | Back alignment and structure |
|---|
Score = 52.7 bits (127), Expect = 1e-07
Identities = 34/266 (12%), Positives = 58/266 (21%), Gaps = 66/266 (24%)
Query: 205 NLGIAYFQSGDMEQSAKCFQDLILKDQNHPAALINYAALL--LCKYGSVLAGAGANTGEG 262
LG +G + + F + D ++ A A + + K +
Sbjct: 8 ELGKKLLAAGQLADALSQFHAAVDGDPDNYIAYYRRATVFLAMGKSKA------------ 55
Query: 263 ACLDQASAVNVAKECLLAALKADPKAAHIWANLANAYYLTGDHRSSGKCLEKAAKLEPNC 322
A L + + G + +K K P+
Sbjct: 56 -----------ALPDLTKVIALKMDFTAARLQRGHLLLKQGKLDEAEDDFKKVLKSNPS- 103
Query: 323 MSTRYAVAVSRIKDAERSQEPTEQLSWAGNEMASILREGDPVQIEPPIAWAGFAAVQKTH 382
++ E S A
Sbjct: 104 ----EQEEKEAESQLVKADEMQRLRSQ------------------------ALDAFDGAD 135
Query: 383 HEVAAAFETEENELSKMEECAGAGESAFLDQASA------VNVAKECLLAALKADPKAAH 436
+ A L K+ E +A A L AA K
Sbjct: 136 YTAA------ITFLDKILEVCVWDAELRELRAECFIKEGEPRKAISDLKAASKLKSDNTE 189
Query: 437 IWANLANAYYLTGDHRSSGKCLEKVL 462
+ ++ YY GDH S + + L
Sbjct: 190 AFYKISTLYYQLGDHELSLSEVRECL 215
|
| >2xpi_A Anaphase-promoting complex subunit CUT9; cell cycle, TPR, ubiquitin ligase; 2.60A {Schizosaccharomyces pombe} Length = 597 | Back alignment and structure |
|---|
Score = 98.8 bits (246), Expect = 3e-22
Identities = 56/427 (13%), Positives = 118/427 (27%), Gaps = 74/427 (17%)
Query: 68 ARKMPKNAHAHFLLGLMYQRLGQPLKAVSSYEKAEEI---------------LLRCEADI 112
+ A +L G +Y L +A Y++A + LL + +
Sbjct: 193 DGGIKLEASMCYLRGQVYTNLSNFDRAKECYKEALMVDAKCYEAFDQLVSNHLLTADEEW 252
Query: 113 ARPELLSLVQIHHAQCLLPESSGDNSLDKELEPEELEEILSKLKESMQSDTRQAVVWNTL 172
L+ S L+K +EL L S+ + + +
Sbjct: 253 DLVLKLNYSTYSKEDAAFLRSLYMLKLNKTSHEDELRRAEDYLS-SINGLEKSSDLLLCK 311
Query: 173 GLILLKSGRLQSSISVLSSLLAVDPNNCDCIGNLGIAYFQSGDMEQSAKCFQDLILKDQN 232
L R +++ + +L +DP N D + +SG+ + DL+ +
Sbjct: 312 ADTLFVRSRFIDVLAITTKILEIDPYNLDVYPLHLASLHESGEKNKLYLISNDLVDRHPE 371
Query: 233 HPAALINYAALLLCKYGSVLAGAGANTGEGACLDQASAVNVAKECLLAALKADPKAAHIW 292
+ G + ++ A+ + DP+ W
Sbjct: 372 KAVTWLAV---------------------GIYYLCVNKISEARRYFSKSSTMDPQFGPAW 410
Query: 293 ANLANAYYLTGDHRSSGKCLEKAAKLEPNCMSTRYAVAVS-----RIKDAERSQE----- 342
A+++ + G+H + AA+L + + I A +
Sbjct: 411 IGFAHSFAIEGEHDQAISAYTTAARLFQGTHLPYLFLGMQHMQLGNILLANEYLQSSYAL 470
Query: 343 -PTEQLSWAGNEMASILREGDPVQIEPPIAWAGFAAVQKTHHEVAAAFETEENELSKMEE 401
+ L NE+ + + F+ + K +
Sbjct: 471 FQYDPLLL--NELGVVAFN------------------KSDMQTAINHFQNALLLVKKTQS 510
Query: 402 CAGAGESAFLDQASA------VNVAKECLLAALKADPKAAHIWANLANAYYLTGDHRSSG 455
+ + + A + A + L L A++ +A Y +
Sbjct: 511 NEKPWAATWANLGHAYRKLKMYDAAIDALNQGLLLSTNDANVHTAIALVYLHKKIPGLAI 570
Query: 456 KCLEKVL 462
L + L
Sbjct: 571 THLHESL 577
|
| >2xpi_A Anaphase-promoting complex subunit CUT9; cell cycle, TPR, ubiquitin ligase; 2.60A {Schizosaccharomyces pombe} Length = 597 | Back alignment and structure |
|---|
Score = 79.1 bits (195), Expect = 7e-16
Identities = 40/266 (15%), Positives = 86/266 (32%), Gaps = 42/266 (15%)
Query: 72 PKNAHAHFLLGLMYQRLGQPLKAVSSYEKAEEILLRCEADIARPELLSLVQIHHAQCLLP 131
P+ A +G+ Y + + +A + K+ + + A
Sbjct: 370 PEKAVTWLAVGIYYLCVNKISEARRYFSKSSTM----DPQFG-----------PAWIGF- 413
Query: 132 ESSGDNSLDKELEPEELEEILSKLKESMQSDTRQAVVWNTLGLILLKSGRLQSSISVLSS 191
+S E E ++ +S + + + + LG+ ++ G + + L S
Sbjct: 414 ---A-HSFAIE---GEHDQAISAYTTAARLFQGTHLPYLFLGMQHMQLGNILLANEYLQS 466
Query: 192 LLAVDPNNCDCIGNLGIAYFQSGDMEQSAKCFQDLILKDQNHPAALINYAALLLCKYGSV 251
A+ + + LG+ F DM+ + FQ+ +L + + +AA
Sbjct: 467 SYALFQYDPLLLNELGVVAFNKSDMQTAINHFQNALLLVKKTQSNEKPWAATWANL---- 522
Query: 252 LAGAGANTGEGACLDQASAVNVAKECLLAALKADPKAAHIWANLANAYYLTGDHRSSGKC 311
G + + A + L L A++ +A Y +
Sbjct: 523 ----------GHAYRKLKMYDAAIDALNQGLLLSTNDANVHTAIALVYLHKKIPGLAITH 572
Query: 312 LEKAAKLEPNCMSTRYAVAVSRIKDA 337
L ++ + PN +A +K A
Sbjct: 573 LHESLAISPN-----EIMASDLLKRA 593
|
| >2xpi_A Anaphase-promoting complex subunit CUT9; cell cycle, TPR, ubiquitin ligase; 2.60A {Schizosaccharomyces pombe} Length = 597 | Back alignment and structure |
|---|
Score = 74.9 bits (184), Expect = 1e-14
Identities = 53/419 (12%), Positives = 107/419 (25%), Gaps = 90/419 (21%)
Query: 71 MPKNAHAHFLLGLMYQRLGQPLKAVSSYEKAEEILLRCEADIARPELLSLVQIHHAQCLL 130
+ N + F L +Y G Y +A+ +L + + L A CL+
Sbjct: 113 ITGNPNDAFWLAQVYCCTGD-------YARAKCLLTKEDLYNRSSACRYL----AAFCLV 161
Query: 131 PESSGDNSLDKELEPEELEEILSKLKESMQSDTR---QAVVWNTLGLILLKSGRLQSSIS 187
+L+ E + + + D +A + G + +
Sbjct: 162 KLYDWQGALNLLGETNPFRKDEKNANKLLMQDGGIKLEASMCYLRGQVYTNLSNFDRAKE 221
Query: 188 VLSSLLAVDPNNCDCIGNLGIAYFQSGDMEQSAKCFQDLILKDQNHPAALINYAALLLCK 247
L VD + L + + D E + + A L + L L K
Sbjct: 222 CYKEALMVDAKCYEAFDQLVSNHLLTADEEWDLVLKLNYSTYSKEDAAFLRSLYMLKLNK 281
Query: 248 YGSVLAGAGANTGEGACLDQASAVNVAKECLLAALKADPKAAHIWANLANAYYLTGDHRS 307
L +A E L+++ K++ + A+ ++
Sbjct: 282 TSH-----------EDELRRA-------EDYLSSINGLEKSSDLLLCKADTLFVRSRFID 323
Query: 308 SGKCLEKAAKLEPN---CMSTRYAVAVSR------IKDAER--SQEPTEQLSWAGNEMAS 356
K +++P A + + P + ++W +
Sbjct: 324 VLAITTKILEIDPYNLDVYPLHLASLHESGEKNKLYLISNDLVDRHPEKAVTW--LAVGI 381
Query: 357 ILRE-GDP----------VQIEP--PIAWAGFAAVQKTHHEVAAAFETEENELSKMEECA 403
++P AW GFA + + E
Sbjct: 382 YYLCVNKISEARRYFSKSSTMDPQFGPAWIGFA-----------------HSFAIEGE-- 422
Query: 404 GAGESAFLDQASAVNVAKECLLAALKADPKAAHIWANLANAYYLTGDHRSSGKCLEKVL 462
DQ A A + + L + G+ + + L+
Sbjct: 423 -------HDQ------AISAYTTAARLFQGTHLPYLFLGMQHMQLGNILLANEYLQSSY 468
|
| >2xpi_A Anaphase-promoting complex subunit CUT9; cell cycle, TPR, ubiquitin ligase; 2.60A {Schizosaccharomyces pombe} Length = 597 | Back alignment and structure |
|---|
Score = 61.0 bits (148), Expect = 3e-10
Identities = 34/235 (14%), Positives = 60/235 (25%), Gaps = 51/235 (21%)
Query: 72 PKNAHAHFLLGLMYQRLGQPLKAVSSYEKAEEILLRCEADIARPELLSLVQIHHAQCLLP 131
P+ A + G+ +A+S+Y A R P L L H
Sbjct: 404 PQFGPAWIGFAHSFAIEGEHDQAISAYTTA----ARLFQGTHLP-YLFLGMQHMQL---- 454
Query: 132 ESSGDNSLDKELEPEELEEILSKLKESMQSDTRQAVVWNTLGLILLKSGRLQSSI----- 186
+ L+ S ++ N LG++ +Q++I
Sbjct: 455 --------------GNILLANEYLQSSYALFQYDPLLLNELGVVAFNKSDMQTAINHFQN 500
Query: 187 --SVLSSLLAVDPNNCDCIGNLGIAYFQSGDMEQSAKCFQDLILKDQNHPAALINYAALL 244
++ + + NLG AY + + + +L N A +
Sbjct: 501 ALLLVKKTQSNEKPWAATWANLGHAYRKLKMYDAAIDALNQGLLLSTNDANVHTAIALVY 560
Query: 245 LCKYGSVLAGAGANTGEGACLDQASAVNVAKECLLAALKADPKAAHIWANLANAY 299
L + A L +L P L A
Sbjct: 561 L------------HKKI---PGLA------ITHLHESLAISPNEIMASDLLKRAL 594
|
| >2xpi_A Anaphase-promoting complex subunit CUT9; cell cycle, TPR, ubiquitin ligase; 2.60A {Schizosaccharomyces pombe} Length = 597 | Back alignment and structure |
|---|
Score = 59.9 bits (145), Expect = 1e-09
Identities = 23/172 (13%), Positives = 54/172 (31%), Gaps = 16/172 (9%)
Query: 68 ARKMPKNAHAHFLLGLMYQRLGQPLKAVSSYEKAEEILLRCEADIARPELLSLVQIHHAQ 127
AR + LG+ + +LG L A + + + + +
Sbjct: 434 ARLFQGTHLPYLFLGMQHMQLGNILLANEYLQSSYAL---------FQYD---PLLLNEL 481
Query: 128 CLLPESSGDNSLDKELEPEELEEILSKLKESMQSDTRQAVVWNTLGLILLKSGRLQSSIS 187
++ + D + + + L +K++ ++ A W LG K ++I
Sbjct: 482 GVVAFNKSD--MQTAIN--HFQNALLLVKKTQSNEKPWAATWANLGHAYRKLKMYDAAID 537
Query: 188 VLSSLLAVDPNNCDCIGNLGIAYFQSGDMEQSAKCFQDLILKDQNHPAALIN 239
L+ L + N+ + + + Y + + + N A
Sbjct: 538 ALNQGLLLSTNDANVHTAIALVYLHKKIPGLAITHLHESLAISPNEIMASDL 589
|
| >2xpi_A Anaphase-promoting complex subunit CUT9; cell cycle, TPR, ubiquitin ligase; 2.60A {Schizosaccharomyces pombe} Length = 597 | Back alignment and structure |
|---|
Score = 56.8 bits (137), Expect = 8e-09
Identities = 40/297 (13%), Positives = 77/297 (25%), Gaps = 23/297 (7%)
Query: 172 LGLILLKSGRLQSSISVLSSLLAVDPNNCDCIGNLGIAYFQSGDMEQSAKCFQDLILKDQ 231
L + +G + +L+ + ++ C + D + + +
Sbjct: 123 LAQVYCCTGDYARAKCLLTKEDLYNRSS-ACRYLAAFCLVKLYDWQGALNLLGE-----T 176
Query: 232 NHPAALINYAALLLCKYGSVLAGAGANTGEGACLDQASAVNVAKECLLAALKADPKAAHI 291
N A LL + G + A G S + AKEC AL D K
Sbjct: 177 NPFRKDEKNANKLLMQDGGIKLEASMCYLRGQVYTNLSNFDRAKECYKEALMVDAKCYEA 236
Query: 292 WANLANAYYLTGDHR---SSGKCLEKAAKLEPNCMSTRYAVAVSRIKDAERSQEPTEQLS 348
+ L + + LT D +K + + + Y + +++ + + + LS
Sbjct: 237 FDQLVSNHLLTADEEWDLVLKLNYSTYSKEDAAFLRSLYMLKLNKTSHEDELRRAEDYLS 296
Query: 349 WAGNEMASILREGDPVQIEPPIAWAGFAAVQKTHHEVAAAFETEENELSKMEECAGA--G 406
G + A L
Sbjct: 297 SI---------NGLE---KSSDLLLCKADTLFVRSRFIDVLAITTKILEIDPYNLDVYPL 344
Query: 407 ESAFLDQASAVNVAKECLLAALKADPKAAHIWANLANAYYLTGDHRSSGKCLEKVLM 463
A L ++ N + P+ A W + Y + + K
Sbjct: 345 HLASLHESGEKNKLYLISNDLVDRHPEKAVTWLAVGIYYLCVNKISEARRYFSKSST 401
|
| >2xpi_A Anaphase-promoting complex subunit CUT9; cell cycle, TPR, ubiquitin ligase; 2.60A {Schizosaccharomyces pombe} Length = 597 | Back alignment and structure |
|---|
Score = 51.4 bits (123), Expect = 4e-07
Identities = 33/287 (11%), Positives = 84/287 (29%), Gaps = 50/287 (17%)
Query: 177 LKSGRLQSSISVLSSLLAVDPNNCDCIGNLGIAYFQSGDMEQSAKCFQDLILKDQNHPAA 236
L + + + V +L + N D L Y +GD ++ L +++
Sbjct: 95 LMQQQYKCAAFVGEKVLDITGNPND-AFWLAQVYCCTGDYARAKCLLTKEDLYNRSSACR 153
Query: 237 LINYAALLLC-KYGSVLAGAGANTGEGACLDQASAVNVAKECLLAALKADPKAAHIWANL 295
+ L+ + A G A + L+ +A+ +
Sbjct: 154 YLAAFCLVKLYDWQG------ALNLLGETNPFRKDEKNANKLLMQDGGIKLEAS-MCYLR 206
Query: 296 ANAYYLTGDHRSSGKCLEKAAKLEPNCMSTRYAVAVSRIKDAERSQEPTEQLSWAGNEMA 355
Y + + +C ++A ++ C + + + A+ + +L+++
Sbjct: 207 GQVYTNLSNFDRAKECYKEALMVDAKCYEAFDQLVSNHLLTADEEWDLVLKLNYS----- 261
Query: 356 SILREGDPVQIEPPIAWAGFAAVQKTHHEVAAAFETEENELSKMEECAGAGESAFLDQAS 415
AA ++ + + + E+EL
Sbjct: 262 --------------TYSKEDAAFLRSLYMLKLNKTSHEDELR------------------ 289
Query: 416 AVNVAKECLLAALKADPKAAHIWANLANAYYLTGDHRSSGKCLEKVL 462
E L+++ K++ + A+ ++ K+L
Sbjct: 290 ----RAEDYLSSINGLEKSSDLLLCKADTLFVRSRFIDVLAITTKIL 332
|
| >2y4t_A DNAJ homolog subfamily C member 3; chaperone, endoplasmic reticulum, protein folding, tetratricopeptiderepeat, J domain, unfolded protein respons; 3.00A {Homo sapiens} PDB: 2y4u_A Length = 450 | Back alignment and structure |
|---|
Score = 95.1 bits (237), Expect = 2e-21
Identities = 33/254 (12%), Positives = 80/254 (31%), Gaps = 21/254 (8%)
Query: 72 PKNAHAHFLLGLMYQRLGQPLKAVSSYEKAEEILLRCEADIARPELLSLVQIHHAQCLLP 131
A G + + G+ +A ++K + + + L++ Q L
Sbjct: 91 MDFTAARLQRGHLLLKQGKLDEAEDDFKKV--LKSNPSENEEKEAQSQLIKSDEMQRLR- 147
Query: 132 ESSGDNSLDKELEPEELEEILSKLKESMQSDTRQAVVWNTLGLILLKSGRLQSSISVLSS 191
+ + ++ L + ++ A + +K G + +IS L +
Sbjct: 148 -----SQALNAFGSGDYTAAIAFLDKILEVCVWDAELRELRAECFIKEGEPRKAISDLKA 202
Query: 192 LLAVDPNNCDCIGNLGIAYFQSGDMEQSAKCFQDLILKDQNHPAALINYAALLLCKYGSV 251
+ +N + + Y+Q GD E S ++ + DQ+H +Y +
Sbjct: 203 ASKLKNDNTEAFYKISTLYYQLGDHELSLSEVRECLKLDQDHKRCFAHYKQVKKLN---- 258
Query: 252 LAGAGANTGEGACLDQASAVNVAKECLLAALKADPKAAHIWA----NLANAYYLTGDHRS 307
L + A + +K +P A + + +
Sbjct: 259 -----KLIESAEELIRDGRYTDATSKYESVMKTEPSIAEYTVRSKERICHCFSKDEKPVE 313
Query: 308 SGKCLEKAAKLEPN 321
+ + + ++EP+
Sbjct: 314 AIRVCSEVLQMEPD 327
|
| >2y4t_A DNAJ homolog subfamily C member 3; chaperone, endoplasmic reticulum, protein folding, tetratricopeptiderepeat, J domain, unfolded protein respons; 3.00A {Homo sapiens} PDB: 2y4u_A Length = 450 | Back alignment and structure |
|---|
Score = 75.1 bits (185), Expect = 9e-15
Identities = 58/416 (13%), Positives = 123/416 (29%), Gaps = 90/416 (21%)
Query: 75 AHAHFLLGLMYQRLGQPLKAVSSYEKAEEILLRCEADIARPELLSLVQIHHAQCLLPESS 134
H H G+ ++++ EK L L + A
Sbjct: 3 HHHHHSSGVDLGTENLYFQSMADVEK----------------HLELGKKLLAA------- 39
Query: 135 GDNSLDKELEPEELEEILSKLKESMQSDTRQAVVWNTLGLILLKSGRLQSSISVLSSLLA 194
+L + LS+ ++ D + + + L G+ ++++ L+ ++
Sbjct: 40 -----------GQLADALSQFHAAVDGDPDNYIAYYRRATVFLAMGKSKAALPDLTKVIQ 88
Query: 195 VDPNNCDCIGNLGIAYFQSGDMEQSAKCFQDLILKDQNHPAALINYAALLLCKYGSVLAG 254
+ + G + G ++++ F+ ++ + + + L+ L
Sbjct: 89 LKMDFTAARLQRGHLLLKQGKLDEAEDDFKKVLKSNPSENEEKEAQSQLIKSDEMQRLRS 148
Query: 255 AGANTGEG-------ACLDQASAVNV---------------------AKECLLAALKADP 286
N A LD+ V V A L AA K
Sbjct: 149 QALNAFGSGDYTAAIAFLDKILEVCVWDAELRELRAECFIKEGEPRKAISDLKAASKLKN 208
Query: 287 KAAHIWANLANAYYLTGDHRSSGKCLEKAAKLEPNCMSTRYAVAVSRIKDAERSQEPTEQ 346
+ ++ YY GDH S + + KL+ + ++K + E E+
Sbjct: 209 DNTEAFYKISTLYYQLGDHELSLSEVRECLKLDQDHKRCFAHYK--QVKKLNKLIESAEE 266
Query: 347 LSWAGNEMASILREGDPVQIEPPIAWAGFAAVQKTHHEVAAAFETEENELSKMEECAGAG 406
L G + + ++ EP IA ++ + F ++ K E
Sbjct: 267 LIRDGRYTDATSKYESVMKTEPSIA----EYTVRSKERICHCF----SKDEKPVE----- 313
Query: 407 ESAFLDQASAVNVAKECLLAALKADPKAAHIWANLANAYYLTGDHRSSGKCLEKVL 462
A L+ +P + + A AY + + + + E
Sbjct: 314 -------------AIRVCSEVLQMEPDNVNALKDRAEAYLIEEMYDEAIQDYETAQ 356
|
| >2y4t_A DNAJ homolog subfamily C member 3; chaperone, endoplasmic reticulum, protein folding, tetratricopeptiderepeat, J domain, unfolded protein respons; 3.00A {Homo sapiens} PDB: 2y4u_A Length = 450 | Back alignment and structure |
|---|
Score = 60.5 bits (147), Expect = 5e-10
Identities = 31/238 (13%), Positives = 72/238 (30%), Gaps = 18/238 (7%)
Query: 66 HVARKMPKNAHAHFLLGLMYQRLGQPLKAVSSYEKAEEILLRCEADIARPELLSLVQIHH 125
++ N A + + +Y +LG ++S + ++ + H+
Sbjct: 202 AASKLKNDNTEAFYKISTLYYQLGDHELSLSEVRECLKL---------DQDH-KRCFAHY 251
Query: 126 AQCLLPESSGDNSLDKELEPEELEEILSKLKESMQSDTRQAVVW----NTLGLILLKSGR 181
Q S ++ + + SK + M+++ A + K +
Sbjct: 252 KQVKKLNKL-IESAEELIRDGRYTDATSKYESVMKTEPSIAEYTVRSKERICHCFSKDEK 310
Query: 182 LQSSISVLSSLLAVDPNNCDCIGNLGIAYFQSGDMEQSAKCFQDLILKDQNHPAALINYA 241
+I V S +L ++P+N + + + AY +++ + ++ ++N
Sbjct: 311 PVEAIRVCSEVLQMEPDNVNALKDRAEAYLIEEMYDEAIQDYETAQEHNENDQQIREGLE 370
Query: 242 ALLLCKYGSVLAGAGANTGEGACLDQASAVNVAKECLLAALKADPKAAHIWANLANAY 299
S G A + K AL+ P A
Sbjct: 371 KAQRLLKQSQKRDYYKILG---VKRNAKKQEIIKAYRKLALQWHPDNFQNEEEKKKAE 425
|
| >1w3b_A UDP-N-acetylglucosamine--peptide N-acetylglucosaminyltransferase 110; OGT, glcnac, nucleoporin, O-linked glycosylation, TPR repeat, protein binding; 2.85A {Homo sapiens} SCOP: a.118.8.1 Length = 388 | Back alignment and structure |
|---|
Score = 90.3 bits (225), Expect = 6e-20
Identities = 71/391 (18%), Positives = 129/391 (32%), Gaps = 88/391 (22%)
Query: 72 PKNAHAHFLLGLMYQRLGQPLKAVSSYEKAEEILLRCEADIARPELLSLVQIHHAQCLLP 131
P A A+ LG +Y+ GQ +A+ Y A + +P+ + +
Sbjct: 64 PLLAEAYSNLGNVYKERGQLQEAIEHYRHALRL---------KPDF---IDGYINLAAAL 111
Query: 132 ESSGDNSLDKELEPEELEEILSKLKESMQSDTRQAVVWNTLGLILLKSGRLQSSISVLSS 191
++GD +E + ++Q + V + LG +L GRL+ + +
Sbjct: 112 VAAGD-----------MEGAVQAYVSALQYNPDLYCVRSDLGNLLKALGRLEEAKACYLK 160
Query: 192 LLAVDPNNCDCIGNLGIAYFQSGDMEQSAKCFQDLILKDQNHPAALINYAALLLCKYGSV 251
+ PN NLG + G++ + F+ + D N A IN +L
Sbjct: 161 AIETQPNFAVAWSNLGCVFNAQGEIWLAIHHFEKAVTLDPNFLDAYINLGNVL------- 213
Query: 252 LAGAGANTGEGACLDQASAVNVAKECLLAALKADPKAAHIWANLANAYYLTGDHRSSGKC 311
D+ A L AL P A + NLA YY G +
Sbjct: 214 -----KEARI---FDR------AVAAYLRALSLSPNHAVVHGNLACVYYEQGLIDLAIDT 259
Query: 312 LEKAAKLEPNCMSTRYAVAVSRIKDAERSQEPTEQLSWAGNEMASILREGDPVQIEPPIA 371
+A +L+P+ +A + K+ E + + A +++ P A
Sbjct: 260 YRRAIELQPHFPDAYCNLANAL-KEKGSVAEAEDCYNTA-------------LRLCPTHA 305
Query: 372 WAGFAAVQKTHHEVAAAFETEENELSKMEECAGAGESAFLDQASAVNVAKECLLAALKAD 431
+ + +A E +EE A AL+
Sbjct: 306 DS--------LNNLANIK----REQGNIEE------------------AVRLYRKALEVF 335
Query: 432 PKAAHIWANLANAYYLTGDHRSSGKCLEKVL 462
P+ A +NLA+ G + + ++ +
Sbjct: 336 PEFAAAHSNLASVLQQQGKLQEALMHYKEAI 366
|
| >1w3b_A UDP-N-acetylglucosamine--peptide N-acetylglucosaminyltransferase 110; OGT, glcnac, nucleoporin, O-linked glycosylation, TPR repeat, protein binding; 2.85A {Homo sapiens} SCOP: a.118.8.1 Length = 388 | Back alignment and structure |
|---|
Score = 84.9 bits (211), Expect = 4e-18
Identities = 65/381 (17%), Positives = 117/381 (30%), Gaps = 92/381 (24%)
Query: 72 PKNAHAHFLLGLMYQRLGQPLKAVSSYEKAEEILLRCEADIARPELLSLVQIHH--AQCL 129
P + L G AV +Y A + P+ L + L
Sbjct: 98 PDFIDGYINLAAALVAAGDMEGAVQAYVSALQY---------NPD---LYCVRSDLGNLL 145
Query: 130 LPESSGDNSLDKELEPEELEEILSKLKESMQSDTRQAVVWNTLGLILLKSGRLQSSISVL 189
K L LEE + +++++ AV W+ LG + G + +I
Sbjct: 146 -----------KAL--GRLEEAKACYLKAIETQPNFAVAWSNLGCVFNAQGEIWLAIHHF 192
Query: 190 SSLLAVDPNNCDCIGNLGIAYFQSGDMEQSAKCFQDLILKDQNHPAALINYAALLLCKYG 249
+ +DPN D NLG ++ +++ + + NH N A +
Sbjct: 193 EKAVTLDPNFLDAYINLGNVLKEARIFDRAVAAYLRALSLSPNHAVVHGNLACVY----- 247
Query: 250 SVLAGAGANTGEGACLDQASAVNVAKECLLAALKADPKAAHIWANLANAYYLTGDHRSSG 309
G +D A + A++ P + NLANA G +
Sbjct: 248 -------YEQGL---IDL------AIDTYRRAIELQPHFPDAYCNLANALKEKGSVAEAE 291
Query: 310 KCLEKAAKLEPNCMSTRYAVAVSRIKDAERSQEPTEQLSWAGNEMASILREGDPVQIEPP 369
C A +L P + +A + ++ +E A +++ P
Sbjct: 292 DCYNTALRLCPTHADSLNNLANIK-REQGNIEEAVRLYRKA-------------LEVFPE 337
Query: 370 IAWAGFAAVQKTHHEVAAAFETEENELSKMEECAGAGESAFLDQASAVNVAKECLLAALK 429
A A H +A+ + + K++E A A++
Sbjct: 338 FAAA--------HSNLASVLQ----QQGKLQE------------------ALMHYKEAIR 367
Query: 430 ADPKAAHIWANLANAYYLTGD 450
P A ++N+ N D
Sbjct: 368 ISPTFADAYSNMGNTLKEMQD 388
|
| >1w3b_A UDP-N-acetylglucosamine--peptide N-acetylglucosaminyltransferase 110; OGT, glcnac, nucleoporin, O-linked glycosylation, TPR repeat, protein binding; 2.85A {Homo sapiens} SCOP: a.118.8.1 Length = 388 | Back alignment and structure |
|---|
Score = 80.7 bits (200), Expect = 1e-16
Identities = 53/338 (15%), Positives = 103/338 (30%), Gaps = 75/338 (22%)
Query: 147 ELEEILSKLKESMQSDTRQAVVWNTLGLILLKSGRLQSSISVLSSLLAVDPNNCDCIGNL 206
+ E + + + V L I + RL S + + +P + NL
Sbjct: 14 DFEAAERHCMQLWRQEPDNTGVLLLLSSIHFQCRRLDRSAHFSTLAIKQNPLLAEAYSNL 73
Query: 207 GIAYFQSGDMEQSAKCFQDLILKDQNHPAALINYAALLLCKYGSVLAGAGANTGEGACLD 266
G Y + G ++++ + ++ + + IN AA L G+ ++
Sbjct: 74 GNVYKERGQLQEAIEHYRHALRLKPDFIDGYINLAAAL------------VAAGD---ME 118
Query: 267 QASAVNVAKECLLAALKADPKAAHIWANLANAYYLTGDHRSSGKCLEKAAKLEPNCMSTR 326
A + ++AL+ +P + ++L N G + C KA + +PN
Sbjct: 119 G------AVQAYVSALQYNPDLYCVRSDLGNLLKALGRLEEAKACYLKAIETQPNFAVAW 172
Query: 327 YAVAVS-----RIKDAERS------QEPTEQLSWAGNEMASILRE-GDP----------V 364
+ I A +P A + ++L+E +
Sbjct: 173 SNLGCVFNAQGEIWLAIHHFEKAVTLDP--NFLDAYINLGNVLKEARIFDRAVAAYLRAL 230
Query: 365 QIEPPIAWAGFAAVQKTHHEVAAAFETEENELSKMEECAGAGESAFLDQASAVNVAKECL 424
+ P A H +A + E ++ A +
Sbjct: 231 SLSPNHAVV--------HGNLACVY----YEQGLIDL------------------AIDTY 260
Query: 425 LAALKADPKAAHIWANLANAYYLTGDHRSSGKCLEKVL 462
A++ P + NLANA G + C L
Sbjct: 261 RRAIELQPHFPDAYCNLANALKEKGSVAEAEDCYNTAL 298
|
| >1w3b_A UDP-N-acetylglucosamine--peptide N-acetylglucosaminyltransferase 110; OGT, glcnac, nucleoporin, O-linked glycosylation, TPR repeat, protein binding; 2.85A {Homo sapiens} SCOP: a.118.8.1 Length = 388 | Back alignment and structure |
|---|
Score = 76.8 bits (190), Expect = 2e-15
Identities = 50/316 (15%), Positives = 92/316 (29%), Gaps = 75/316 (23%)
Query: 169 WNTLGLILLKSGRLQSSISVLSSLLAVDPNNCDCIGNLGIAYFQSGDMEQSAKCFQDLIL 228
L ++G +++ L +P+N + L +FQ +++SA I
Sbjct: 2 PMELAHREYQAGDFEAAERHCMQLWRQEPDNTGVLLLLSSIHFQCRRLDRSAHFSTLAIK 61
Query: 229 KDQNHPAALINYAALLLCKYGSVLAGAGANTGEGACLDQASAVNVAKECLLAALKADPKA 288
++ A N + G+ L + A E AL+ P
Sbjct: 62 QNPLLAEAYSNLGNVY------------KERGQ---LQE------AIEHYRHALRLKPDF 100
Query: 289 AHIWANLANAYYLTGDHRSSGKCLEKAAKLEPNCMSTRYAVAVS-----RIKDAERSQE- 342
+ NLA A GD + + A + P+ R + R+++A+
Sbjct: 101 IDGYINLAAALVAAGDMEGAVQAYVSALQYNPDLYCVRSDLGNLLKALGRLEEAKACYLK 160
Query: 343 -----PTEQLSWAGNEMASILRE-GDP----------VQIEPPIAWAGFAAVQKTHHEVA 386
P + A + + + G+ V ++P A + +
Sbjct: 161 AIETQP--NFAVAWSNLGCVFNAQGEIWLAIHHFEKAVTLDPNFLDA--------YINLG 210
Query: 387 AAFETEENELSKMEECAGAGESAFLDQASAVNVAKECLLAALKADPKAAHIWANLANAYY 446
E + A L AL P A + NLA YY
Sbjct: 211 NVL----KEARIFDR------------------AVAAYLRALSLSPNHAVVHGNLACVYY 248
Query: 447 LTGDHRSSGKCLEKVL 462
G + + +
Sbjct: 249 EQGLIDLAIDTYRRAI 264
|
| >4g1t_A Interferon-induced protein with tetratricopeptide 2; ISG, all alpha helix, antivirus, antiviral protein; 2.80A {Homo sapiens} Length = 472 | Back alignment and structure |
|---|
Score = 88.5 bits (219), Expect = 4e-19
Identities = 51/435 (11%), Positives = 121/435 (27%), Gaps = 69/435 (15%)
Query: 72 PKNAHAHFLLGLMYQRLGQPLKAVSSYEKAEEILLRCEADIARPELLS----LVQIHHAQ 127
A LL + GQ A+ KAEE++ + AD A L +++
Sbjct: 48 EFKATMCNLLAYLKHLKGQNEAALECLRKAEELIQQEHADQAEIRSLVTWGNYAWVYYHM 107
Query: 128 CLLPESSGDNSLDKELEPEELEEILSKLKESMQSDTRQAVVWNTLGLILLKSGRLQSSIS 187
D ++ ++++ + K + ++ + + + + +
Sbjct: 108 --------GRLSDVQIYVDKVKHVCEKFSSPYRIESPELDCEEGWTRLKCGGNQNERAKV 159
Query: 188 VLSSLLAVDPNNCDCIGNLGIAYFQSGDM---EQSAKCFQDLILKDQNHPAALINYAALL 244
L P N + L IA ++ + + + + I + ++ + A L
Sbjct: 160 CFEKALEKKPKNPEFTSGLAIASYRLDNWPPSQNAIDPLRQAIRLNPDNQYLKVLLALKL 219
Query: 245 LCKYGSVLAGAGANTGEGACLDQASAVNVAKECLLAALKADPKAAHIWANLANAYYLTGD 304
++ ++ + AL+ P + + A Y +
Sbjct: 220 -----------------HKMREEGEEEGEGEKLVEEALEKAPGVTDVLRSAAKFYRRKDE 262
Query: 305 HRSSGKCLEKAAKLEPNCMSTRYAVAVSRIKDAERSQEPTEQLSWAGNEMASILREG--- 361
+ + L+KA + PN + + E + ++ ++
Sbjct: 263 PDKAIELLKKALEYIPNNAYLHCQIGCCYRAKVFQVMNLRENGMYGKRKLLELIGHAVAH 322
Query: 362 --DPVQIEP--PIAWAGFAAVQKTHHEVAAAFETEENELSKMEECAGAGESAF------L 411
+ + A++ + A + E SK L
Sbjct: 323 LKKADEANDNLFRVCSILASLHALADQYEEAEYYFQKEFSKELTPVAKQLLHLRYGNFQL 382
Query: 412 DQASAVNVAKECLLAALKADPKA------------------------AHIWANLANAYYL 447
Q + A + +K + K+ + LA L
Sbjct: 383 YQMKCEDKAIHHFIEGVKINQKSREKEKMKDKLQKIAKMRLSKNGADSEALHVLAFLQEL 442
Query: 448 TGDHRSSGKCLEKVL 462
+ + + E+ L
Sbjct: 443 NEKMQQADEDSERGL 457
|
| >4g1t_A Interferon-induced protein with tetratricopeptide 2; ISG, all alpha helix, antivirus, antiviral protein; 2.80A {Homo sapiens} Length = 472 | Back alignment and structure |
|---|
Score = 81.9 bits (202), Expect = 6e-17
Identities = 56/362 (15%), Positives = 120/362 (33%), Gaps = 59/362 (16%)
Query: 137 NSLDKELEPEELEEILSKLKESMQSDTRQAVVWNTLGLILLKSGRLQSSISVL------- 189
N ++ E ++ E+ + E Q+ +A + N L + G+ ++++ L
Sbjct: 23 NLMEGENSLDDFEDKVFYRTE-FQNREFKATMCNLLAYLKHLKGQNEAALECLRKAEELI 81
Query: 190 --SSLLAVDPNNCDCIGNLGIAYFQSGDMEQSAKCFQDLILKDQNHPAALINYAALLLCK 247
+ + GN Y+ G + + + + + L C+
Sbjct: 82 QQEHADQAEIRSLVTWGNYAWVYYHMGRLSDVQIYVDKVKHVCEKFSSPYRIESPELDCE 141
Query: 248 YGSVLAGAGANTGEGACLDQASAVNVAKECLLAALKADPKAAHIWANLANAYYLTGD--- 304
G G N ++ AK C AL+ PK + LA A Y +
Sbjct: 142 EGWTRLKCGGN-----QNER------AKVCFEKALEKKPKNPEFTSGLAIASYRLDNWPP 190
Query: 305 HRSSGKCLEKAAKLEPNCMSTRYAVAVSRIKDAERSQEPTE-------------QLSWAG 351
+++ L +A +L P+ + +A+ K E +E E ++
Sbjct: 191 SQNAIDPLRQAIRLNPDNQYLKVLLALKLHKMREEGEEEGEGEKLVEEALEKAPGVTDVL 250
Query: 352 NEMASILRE-GDP----------VQIEPPIAWAGFAAVQKTHHEVAAAFETEENELSKME 400
A R +P ++ P A+ H ++ + + ++ +
Sbjct: 251 RSAAKFYRRKDEPDKAIELLKKALEYIPNNAYL--------HCQIGCCYRAKVFQVMNLR 302
Query: 401 ECAGAGESAFLDQASAVNVAKECLLAALKADPKAAHIWANLANAYYLTGDHRSSGKCLEK 460
E G+ L+ + A L A +A+ + + LA+ + L + + +K
Sbjct: 303 ENGMYGKRKLLE---LIGHAVAHLKKADEANDNLFRVCSILASLHALADQYEEAEYYFQK 359
Query: 461 VL 462
Sbjct: 360 EF 361
|
| >4g1t_A Interferon-induced protein with tetratricopeptide 2; ISG, all alpha helix, antivirus, antiviral protein; 2.80A {Homo sapiens} Length = 472 | Back alignment and structure |
|---|
Score = 76.1 bits (187), Expect = 5e-15
Identities = 30/290 (10%), Positives = 81/290 (27%), Gaps = 40/290 (13%)
Query: 66 HVARKMPKNAHAHFLLGLMYQRLGQPLKAVSSYEKAEEILLRCEADIARPELLSLVQIHH 125
H + ++ +Y +G+ +K + + + P + ++
Sbjct: 85 HADQAEIRSLVTWGNYAWVYYHMGRLSDVQIYVDKVKHVC----EKFSSPYRIESPELDC 140
Query: 126 AQCLLPESSGDNSLDK---------ELEPE-------------------ELEEILSKLKE 157
+ G N ++ E +P+ + + L++
Sbjct: 141 EEGWTRLKCGGNQNERAKVCFEKALEKKPKNPEFTSGLAIASYRLDNWPPSQNAIDPLRQ 200
Query: 158 SMQSDTRQAVVWNTLGLILLK----SGRLQSSISVLSSLLAVDPNNCDCIGNLGIAYFQS 213
+++ + + L L L K ++ L P D + + Y +
Sbjct: 201 AIRLNPDNQYLKVLLALKLHKMREEGEEEGEGEKLVEEALEKAPGVTDVLRSAAKFYRRK 260
Query: 214 GDMEQSAKCFQDLILKDQNHPAALINYAALLLCKYGSVLAGAGANTGEGACLDQA-SAVN 272
+ +++ + + + N+ C V + +
Sbjct: 261 DEPDKAIELLKKALEYIPNNAYLHCQIG---CCYRAKVFQVMNLRENGMYGKRKLLELIG 317
Query: 273 VAKECLLAALKADPKAAHIWANLANAYYLTGDHRSSGKCLEKAAKLEPNC 322
A L A +A+ + + LA+ + L + + +K E
Sbjct: 318 HAVAHLKKADEANDNLFRVCSILASLHALADQYEEAEYYFQKEFSKELTP 367
|
| >4g1t_A Interferon-induced protein with tetratricopeptide 2; ISG, all alpha helix, antivirus, antiviral protein; 2.80A {Homo sapiens} Length = 472 | Back alignment and structure |
|---|
Score = 60.7 bits (147), Expect = 4e-10
Identities = 33/265 (12%), Positives = 64/265 (24%), Gaps = 55/265 (20%)
Query: 69 RKMPKNAHAHFLLGLMYQRLGQPLKAVSSYEKAEEILLRCEADIARPELLSLVQIHHAQC 128
K P Y+R +P KA+ +KA E P +H
Sbjct: 241 EKAPGVTDVLRSAAKFYRRKDEPDKAIELLKKALEY---------IPNN---AYLHC--- 285
Query: 129 LLPESSGDNSLDKELEPEELEEILSKLKESMQSDTRQAVVWNTLGLILLKSGRLQSSISV 188
G K + L E K + A ++
Sbjct: 286 ----QIGCCYRAKVFQVMNLRENGMYGKRKLLELIGHA-------------------VAH 322
Query: 189 LSSLLAVDPNNCDCIGNLGIAYFQSGDMEQSAKCFQDLILKDQNHPAALINYAALLLCKY 248
L + N L + + E++ FQ K+ A + + +Y
Sbjct: 323 LKKADEANDNLFRVCSILASLHALADQYEEAEYYFQKEFSKELTPVAKQLLH-----LRY 377
Query: 249 GSVLAGAGANTGEG-ACLDQA-----------SAVNVAKECLLAALKADPKAAHIWANLA 296
G+ + + + ++ L + + LA
Sbjct: 378 GNFQLYQMKCEDKAIHHFIEGVKINQKSREKEKMKDKLQKIAKMRLSKNGADSEALHVLA 437
Query: 297 NAYYLTGDHRSSGKCLEKAAKLEPN 321
L + + + E+ +
Sbjct: 438 FLQELNEKMQQADEDSERGLESGSL 462
|
| >4g1t_A Interferon-induced protein with tetratricopeptide 2; ISG, all alpha helix, antivirus, antiviral protein; 2.80A {Homo sapiens} Length = 472 | Back alignment and structure |
|---|
Score = 46.5 bits (110), Expect = 1e-05
Identities = 20/176 (11%), Positives = 46/176 (26%), Gaps = 45/176 (25%)
Query: 72 PKNAHAHFLLGLMYQRLGQPLKAVSSYEKAEEILLRCEADIARPELLSLVQIHHAQCLLP 131
+L ++ Q +A ++K
Sbjct: 331 DNLFRVCSILASLHALADQYEEAEYYFQKE------------------------------ 360
Query: 132 ESSGDNSLDKELEPEELEEI---LSKLKESMQSDTRQAVVWNTLGL-ILLKSGRLQSSIS 187
KEL P + + + +A+ G+ I KS +
Sbjct: 361 -------FSKELTPVAKQLLHLRYGNFQLYQMKCEDKAIHHFIEGVKINQKSREKEKMKD 413
Query: 188 VLSSL----LAVDPNNCDCIGNLGIAYFQSGDMEQSAKCFQDLILKDQNHPAALIN 239
L + L+ + + + + L + M+Q+ + + + P+A
Sbjct: 414 KLQKIAKMRLSKNGADSEALHVLAFLQELNEKMQQADEDSERGLESGSLIPSASSW 469
|
| >3urz_A Uncharacterized protein; tetratricopeptide repeats (TPR) containing protein, structur genomics, joint center for structural genomics, JCSG; HET: PG4; 2.19A {Bacteroides ovatus} Length = 208 | Back alignment and structure |
|---|
Score = 84.0 bits (208), Expect = 7e-19
Identities = 29/249 (11%), Positives = 61/249 (24%), Gaps = 61/249 (24%)
Query: 73 KNAHAHFLLGLMYQRLGQPLKAVSSYEKAEEILLRCEADIARPELLSLVQIHHAQCLLPE 132
++ GQ +AVS + +
Sbjct: 2 QSVDEMLQKVSAAIEAGQNGQAVSYFRQT------------------------------- 30
Query: 133 SSGDNSLDKELEPEELEEILSKLKESMQSDTRQAVVWNTLGLILLKSGRLQSSISVLSSL 192
L + E + ++ + + L L K+ + L
Sbjct: 31 --------IALNIDRTE--MYYWTNVDKNSEISSKLATELALAYKKNRNYDKAYLFYKEL 80
Query: 193 LAVDPNNCDCIGNLGIAYFQSGDMEQSAKCFQDLILKDQNHPAALINYAALLLCKYGSVL 252
L PNN DC+ G + + + ++ ++ + ++ AA I
Sbjct: 81 LQKAPNNVDCLEACAEMQVCRGQEKDALRMYEKILQLEADNLAANIFLGNYYYLT----- 135
Query: 253 AGAGANTGEGACLDQASAVNVAKECLLAALKADPKAAHIWANLANAYYLTGDHRSSGKCL 312
+Q E L + K + + T + + L
Sbjct: 136 ------------AEQEKK---KLETDYKKLSSPTKMQYARYRDGLSKLFTTRYEKARNSL 180
Query: 313 EKAAKLEPN 321
+K P+
Sbjct: 181 QKVILRFPS 189
|
| >3urz_A Uncharacterized protein; tetratricopeptide repeats (TPR) containing protein, structur genomics, joint center for structural genomics, JCSG; HET: PG4; 2.19A {Bacteroides ovatus} Length = 208 | Back alignment and structure |
|---|
Score = 58.2 bits (141), Expect = 4e-10
Identities = 17/138 (12%), Positives = 39/138 (28%), Gaps = 5/138 (3%)
Query: 205 NLGIAYFQSGDMEQSAKCFQDLILKDQNHPAALINYAALLLCKYGSVLAGAGANTGEGAC 264
A ++G Q+ F+ I + + + + T
Sbjct: 9 QKVSAAIEAGQNGQAVSYFRQTIALNIDRTEMYYWTNVDK-----NSEISSKLATELALA 63
Query: 265 LDQASAVNVAKECLLAALKADPKAAHIWANLANAYYLTGDHRSSGKCLEKAAKLEPNCMS 324
+ + A L+ P A G + + + EK +LE + ++
Sbjct: 64 YKKNRNYDKAYLFYKELLQKAPNNVDCLEACAEMQVCRGQEKDALRMYEKILQLEADNLA 123
Query: 325 TRYAVAVSRIKDAERSQE 342
+ AE+ ++
Sbjct: 124 ANIFLGNYYYLTAEQEKK 141
|
| >3urz_A Uncharacterized protein; tetratricopeptide repeats (TPR) containing protein, structur genomics, joint center for structural genomics, JCSG; HET: PG4; 2.19A {Bacteroides ovatus} Length = 208 | Back alignment and structure |
|---|
Score = 48.6 bits (116), Expect = 1e-06
Identities = 26/147 (17%), Positives = 47/147 (31%), Gaps = 23/147 (15%)
Query: 72 PKNAHAHFLLGLMYQRLGQPLKAVSSYEKAEEILLRCEADIARPELLSLVQIHHAQCLLP 131
P N M GQ A+ YEK ++ + L+ A L
Sbjct: 85 PNNVDCLEACAEMQVCRGQEKDALRMYEKILQL---------EADNLA------ANIFL- 128
Query: 132 ESSGDNSLDKELEPEELEEILSKLKESMQSDTRQAVVWNTLGLILLKSGRLQSSISVLSS 191
G N E E ++ L + + S T+ GL L + R + + + L
Sbjct: 129 ---G-NYYYLTAEQE--KKKLETDYKKLSSPTKMQYARYRDGLSKLFTTRYEKARNSLQK 182
Query: 192 LLAVDPNNCDCIGNLGIAYFQSGDMEQ 218
++ P+ + L ++ +
Sbjct: 183 VILRFPST-EAQKTLDKILRIEKEVNR 208
|
| >3urz_A Uncharacterized protein; tetratricopeptide repeats (TPR) containing protein, structur genomics, joint center for structural genomics, JCSG; HET: PG4; 2.19A {Bacteroides ovatus} Length = 208 | Back alignment and structure |
|---|
Score = 47.8 bits (114), Expect = 2e-06
Identities = 20/175 (11%), Positives = 52/175 (29%), Gaps = 32/175 (18%)
Query: 67 VARKMPKNAHAHFLLGLMYQRLGQPLKAVSSYEKAEEILLRCEADIARPE----LLSLVQ 122
V + ++ L L Y++ KA Y++ + P L + +
Sbjct: 46 VDKNSEISSKLATELALAYKKNRNYDKAYLFYKELLQK---------APNNVDCLEACAE 96
Query: 123 IHHAQCLLPESSGDNSLDKELEPEELEEILSKLKESMQSDTRQAVVWNTLGLILLKSG-R 181
+ + + ++ L ++ +Q + LG + +
Sbjct: 97 MQVCR------------------GQEKDALRMYEKILQLEADNLAANIFLGNYYYLTAEQ 138
Query: 182 LQSSISVLSSLLAVDPNNCDCIGNLGIAYFQSGDMEQSAKCFQDLILKDQNHPAA 236
+ + L+ G++ + E++ Q +IL+ + A
Sbjct: 139 EKKKLETDYKKLSSPTKMQYARYRDGLSKLFTTRYEKARNSLQKVILRFPSTEAQ 193
|
| >3urz_A Uncharacterized protein; tetratricopeptide repeats (TPR) containing protein, structur genomics, joint center for structural genomics, JCSG; HET: PG4; 2.19A {Bacteroides ovatus} Length = 208 | Back alignment and structure |
|---|
Score = 39.7 bits (93), Expect = 9e-04
Identities = 26/193 (13%), Positives = 52/193 (26%), Gaps = 27/193 (13%)
Query: 287 KAAHIWANLANAYYLTGDHRSSGKCLEKAAKLEPNCMSTRYAVAVSRIKDAERSQEPTEQ 346
++ +A G + + + L + Y V + +E
Sbjct: 2 QSVDEMLQKVSAAIEAGQNGQAVSYFRQTIALNIDRTEMYYWTNV---------DKNSEI 52
Query: 347 LSWAGNEMASILRE-GDP----------VQIEP--PIAWAGFAAVQKTHHEVAAAFETEE 393
S E+A ++ + +Q P A +Q + A E
Sbjct: 53 SSKLATELALAYKKNRNYDKAYLFYKELLQKAPNNVDCLEACAEMQVCRGQEKDALRMYE 112
Query: 394 NELSKMEECAGA----GESAFLDQASAVNVAKECLLAALKADPKAAHIWANLANAYYLTG 449
L + A G + + A E L + K + + T
Sbjct: 113 KILQLEADNLAANIFLG-NYYYLTAEQEKKKLETDYKKLSSPTKMQYARYRDGLSKLFTT 171
Query: 450 DHRSSGKCLEKVL 462
+ + L+KV+
Sbjct: 172 RYEKARNSLQKVI 184
|
| >2gw1_A Mitochondrial precursor proteins import receptor; TPR, protein transport; 3.00A {Saccharomyces cerevisiae} Length = 514 | Back alignment and structure |
|---|
Score = 87.5 bits (217), Expect = 1e-18
Identities = 44/293 (15%), Positives = 84/293 (28%), Gaps = 49/293 (16%)
Query: 72 PKNAHAHFLLGLMYQRLGQPLKAVSSYEKAEEILLRCEADIARPELLSLVQIHHAQCLLP 131
K A + G+ PL A +KA E+ R + I ++
Sbjct: 234 EKLAISLEHTGIFKFLKNDPLGAHEDIKKAIELFPRVNSYIYMALIM------------- 280
Query: 132 ESSGDNSLDKELEPEELEEILSKLKESMQSDTRQAVVWNTLGLILLKSGRLQSSISVLSS 191
+ + E + ++++ D+ + V+ G + +
Sbjct: 281 -----------ADRNDSTEYYNYFDKALKLDSNNSSVYYHRGQMNFILQNYDQAGKDFDK 329
Query: 192 LLAVDPNNCDCIGNLGIAYFQSGDMEQSAKCFQDLILKDQNHPAALINYAALLLCK---- 247
+DP N L ++ + F + K P +A +L K
Sbjct: 330 AKELDPENIFPYIQLACLAYRENKFDDCETLFSEAKRKFPEAPEVPNFFAEILTDKNDFD 389
Query: 248 -----YGSVLA----GAGANTGEGACLDQASAVNV---------AKECLLAALKADPKAA 289
Y + G G + +A+ + A L A K DP++
Sbjct: 390 KALKQYDLAIELENKLDGIYVGIAPLVGKATLLTRNPTVENFIEATNLLEKASKLDPRSE 449
Query: 290 HIWANLANAYYLTGDHRSSGKCLEKAAKLEPNCMSTRYAVAVSRIKDAERSQE 342
LA D + E++A L A+ +A + Q+
Sbjct: 450 QAKIGLAQMKLQQEDIDEAITLFEESADLARTMEEKLQAIT---FAEAAKVQQ 499
|
| >2gw1_A Mitochondrial precursor proteins import receptor; TPR, protein transport; 3.00A {Saccharomyces cerevisiae} Length = 514 | Back alignment and structure |
|---|
Score = 71.7 bits (176), Expect = 1e-13
Identities = 55/452 (12%), Positives = 112/452 (24%), Gaps = 106/452 (23%)
Query: 72 PKNAHAHFLLGLMYQRLGQPLKAVSSYEKA---------------------------EEI 104
P + + LG+ A+ +E
Sbjct: 70 PDYSKVLLRRASANEGLGKFADAMFDLSVLSLNGDFNDASIEPMLERNLNKQAMSKLKEK 129
Query: 105 LLRCEADIARPELLSLVQIHHAQCLLPESSGDNSLDKELEPEELEEILSKLKESMQSDTR 164
+ A P LS + S+ + E + ES ++D
Sbjct: 130 FGDIDTATATPTELSTQPAKERKDKQENLPSVTSMASFFGIFKPELTFANYDESNEADKE 189
Query: 165 QAVVWNTLGLILLKS------------GRLQSSISVLSSLLAVDPNNCDCIGNLGIAYFQ 212
+ L +S + + + + + + GI F
Sbjct: 190 LMNGLSNLYKRSPESYDKADESFTKAARLFEEQLDKNNEDEKLKEKLAISLEHTGIFKFL 249
Query: 213 SGDMEQSAKCFQDLILKDQNHPAALINYAALLLCKYGSVLAGAGANTGEGACLDQASAVN 272
D + + + I + I A ++ + + +
Sbjct: 250 KNDPLGAHEDIKKAIELFPR-VNSYIYMALIMA------------DRND---STEY---- 289
Query: 273 VAKECLLAALKADPKAAHIWANLANAYYLTGDHRSSGKCLEKAAKLEPNCMSTRYAVAVS 332
ALK D + ++ + ++ ++ +GK +KA +L+P + +A
Sbjct: 290 --YNYFDKALKLDSNNSSVYYHRGQMNFILQNYDQAGKDFDKAKELDPENIFPYIQLACL 347
Query: 333 R---------IKDAERSQEPTEQLSWAGNEMASILRE-GDP----------VQIEP--PI 370
++ + N A IL + D +++E
Sbjct: 348 AYRENKFDDCETLFSEAKRKFPEAPEVPNFFAEILTDKNDFDKALKQYDLAIELENKLDG 407
Query: 371 AWAGFAAVQKTHHEVAAAFETEENELSKMEECAGAGESAFLDQASAVNVAKECLLAALKA 430
+ G A + A T + E A L A K
Sbjct: 408 IYVGIAPLVG-----KATLLTRNPTVENFIE------------------ATNLLEKASKL 444
Query: 431 DPKAAHIWANLANAYYLTGDHRSSGKCLEKVL 462
DP++ LA D + E+
Sbjct: 445 DPRSEQAKIGLAQMKLQQEDIDEAITLFEESA 476
|
| >2gw1_A Mitochondrial precursor proteins import receptor; TPR, protein transport; 3.00A {Saccharomyces cerevisiae} Length = 514 | Back alignment and structure |
|---|
Score = 69.4 bits (170), Expect = 8e-13
Identities = 35/318 (11%), Positives = 90/318 (28%), Gaps = 46/318 (14%)
Query: 166 AVVWNTLGLILLKSGRLQSSISVLSSLLAVDPNNCDCIGNLGIAYFQSGDMEQSAKCFQD 225
V ++ L + G L+ + + + L + P+ + A G +
Sbjct: 39 PVFYSNLSACYVSVGDLKKVVEMSTKALELKPDYSKVLLRRASANEGLGKFADAMFDLSV 98
Query: 226 LILKDQNHPAALINYAALLLCKYGSVLAGAGANTGEGACLDQASAVNVAKECLLAALKAD 285
L L + A++ L K + +D A+A A + D
Sbjct: 99 LSLNGDFNDASIEPMLERNLNKQAM-----SKLKEKFGDIDTATATPTELSTQPAKERKD 153
Query: 286 PKAAHIWANLANAYYLTGDHRSSGKCLEKAAKLEPNCMSTRYAVAVSRIKDAERSQEPTE 345
+ +++ + +++ + + M+ + + +++ E
Sbjct: 154 KQENLPSVTSMASFFGIFKPELTFANYDESNEADKELMNGLSNLYKRSPESYDKADESFT 213
Query: 346 QLSWAGNEMASILREGDPVQIEPPIAWA----GFAAVQKTHHEVA-----AAFETEEN-- 394
+ A + + + +++ +A + G K A A E
Sbjct: 214 KA--ARLFEEQLDKNNEDEKLKEKLAISLEHTGIFKFLKNDPLGAHEDIKKAIELFPRVN 271
Query: 395 ----------ELSKMEECAGAGESAFLDQASAVNVAKECLLAALKADPKAAHIWANLANA 444
+ + E ALK D + ++ +
Sbjct: 272 SYIYMALIMADRNDSTE------------------YYNYFDKALKLDSNNSSVYYHRGQM 313
Query: 445 YYLTGDHRSSGKCLEKVL 462
++ ++ +GK +K
Sbjct: 314 NFILQNYDQAGKDFDKAK 331
|
| >2gw1_A Mitochondrial precursor proteins import receptor; TPR, protein transport; 3.00A {Saccharomyces cerevisiae} Length = 514 | Back alignment and structure |
|---|
Score = 59.4 bits (144), Expect = 1e-09
Identities = 33/284 (11%), Positives = 73/284 (25%), Gaps = 40/284 (14%)
Query: 197 PNNCDCIGNLGIAYFQSGDMEQSAKCFQDLILKDQNHPAALINYAALLLCKYGSVLAGAG 256
+ + G +F++ + + K + + ++ N
Sbjct: 3 DKYALALKDKGNQFFRNKKYDDAIKYYNWALELKEDP-VFYSNL---------------- 45
Query: 257 ANTGEGACLDQASAVNVAKECLLAALKADPKAAHIWANLANAYYLTGDHRSSGKCLEKAA 316
AC + E AL+ P + + A+A G + L +
Sbjct: 46 -----SACYVSVGDLKKVVEMSTKALELKPDYSKVLLRRASANEGLGKFADAMFDLSVLS 100
Query: 317 -KLEPNCMSTRYAV-----------AVSRIKDAERSQEPTEQLSWAGNEMASILREGDPV 364
+ N S + + D + + +LS + +E P
Sbjct: 101 LNGDFNDASIEPMLERNLNKQAMSKLKEKFGDIDTATATPTELSTQPAKERKDKQENLPS 160
Query: 365 Q------IEPPIAWAGFAAVQKTHHEVAAAFETEENELSKMEECAGAGESAFLDQASAVN 418
FA +++ N + E + +F A
Sbjct: 161 VTSMASFFGIFKPELTFANYDESNEADKELMNGLSNLYKRSPESYDKADESFTKAARLFE 220
Query: 419 VAKECLLAALKADPKAAHIWANLANAYYLTGDHRSSGKCLEKVL 462
+ K K A + +L D + + ++K +
Sbjct: 221 EQLDKNNEDEKLKEKLAISLEHTGIFKFLKNDPLGAHEDIKKAI 264
|
| >2gw1_A Mitochondrial precursor proteins import receptor; TPR, protein transport; 3.00A {Saccharomyces cerevisiae} Length = 514 | Back alignment and structure |
|---|
Score = 55.1 bits (133), Expect = 2e-08
Identities = 45/421 (10%), Positives = 108/421 (25%), Gaps = 91/421 (21%)
Query: 74 NAHAHFLLGLMYQRLGQPLKAVSSYEKAEEILLRCEADIARPELLSLVQIHHAQCLLPES 133
+ + L Y +G K V KA E+ +P+ +++ LL
Sbjct: 38 DPVFYSNLSACYVSVGDLKKVVEMSTKALEL---------KPD--------YSKVLL--R 78
Query: 134 SGDNSLDKELEPEELEEILSKLKESMQSDTRQAVVWNTLGLILLKSGRLQSSISVLSSLL 193
++ + + + LS L + + L +L+ + +
Sbjct: 79 RA-SANEGLGKFADAMFDLSVLSLNGDFNDASIEPMLERNLNKQAMSKLKEKFGDIDTAT 137
Query: 194 AVDPNNCDCIGNLGI-------------AYFQSGDMEQSAKCFQDLILKDQNHPAALINY 240
A ++F E + + + D+ L N
Sbjct: 138 ATPTELSTQPAKERKDKQENLPSVTSMASFFGIFKPELTFANYDESNEADKELMNGLSNL 197
Query: 241 AALLLCKYGSVLAGAGANTGEGACLDQASAVNVAKECLLAALKADPKAAHIWANLANAYY 300
Y + + + A + K K A + +
Sbjct: 198 YKRSPESY---------DKADESFTKAARLFEEQLDKNNEDEKLKEKLAISLEHTGIFKF 248
Query: 301 LTGDHRSSGKCLEKAAKLEPNCMS-TRYAVAVSR-------IKDAERSQEPTEQLSWAGN 352
L D + + ++KA +L P S A+ ++ +++ + S
Sbjct: 249 LKNDPLGAHEDIKKAIELFPRVNSYIYMALIMADRNDSTEYYNYFDKALKLDSNNSSVYY 308
Query: 353 EMASILRE-GDP----------VQIEPPIAWAGFAAVQKTHHEVAAAFETEENELSKMEE 401
+ + +++P + + ++A +K ++
Sbjct: 309 HRGQMNFILQNYDQAGKDFDKAKELDPENIFP--------YIQLACLA----YRENKFDD 356
Query: 402 CAGAGESAFLDQASAVNVAKECLLAALKADPKAAHIWANLANAYYLTGDHRSSGKCLEKV 461
+ A + P+A + A D + K +
Sbjct: 357 ------------------CETLFSEAKRKFPEAPEVPNFFAEILTDKNDFDKALKQYDLA 398
Query: 462 L 462
+
Sbjct: 399 I 399
|
| >3fp2_A TPR repeat-containing protein YHR117W; TOM71, mitochondria translocation, allosteric REG phosphoprotein, TPR repeat, ATP-binding; 1.98A {Saccharomyces cerevisiae} PDB: 3fp3_A 3fp4_A 3lca_A Length = 537 | Back alignment and structure |
|---|
Score = 87.1 bits (216), Expect = 1e-18
Identities = 33/287 (11%), Positives = 75/287 (26%), Gaps = 28/287 (9%)
Query: 74 NAHAHFLLGLMYQRLGQPLKAVSSYEKAEEILLRCEADIARPELLSLVQIHHAQCLLPES 133
+++ L L + ++KA ++ PE H Q
Sbjct: 275 TPNSYIFLALTLADKENSQEFFKFFQKAVDL---------NPEY-PPTYYHRGQMY---- 320
Query: 134 SGDNSLDKELEPEELEEILSKLKESMQSDTRQAVVWNTLGLILLKSGRLQSSISVLSSLL 193
L+ + + +++ + + L +L K G+ S + +
Sbjct: 321 -------FILQ--DYKNAKEDFQKAQSLNPENVYPYIQLACLLYKQGKFTESEAFFNETK 371
Query: 194 AVDPNNCDCIGNLGIAYFQSGDMEQSAKCFQDLILKDQNHPAALINYAALLLCKYGSVLA 253
P + GD + + K + ++ + L+
Sbjct: 372 LKFPTLPEVPTFFAEILTDRGDFDTAIKQYDIAKRLEEVQEKIHVGIGPLI-----GKAT 426
Query: 254 GAGANTGEGACLDQASAVNVAKECLLAALKADPKAAHIWANLANAYYLTGDHRSSGKCLE 313
+ + N A + L A + DP++ LA + + E
Sbjct: 427 ILARQSSQDPTQLDEEKFNAAIKLLTKACELDPRSEQAKIGLAQLKLQMEKIDEAIELFE 486
Query: 314 KAAKLEPNCMSTRYAVAVSRIKDAERSQEPTEQLSWAGNEMASILRE 360
+A L A + ++ +S + R
Sbjct: 487 DSAILARTMDEKLQATTFAEAAKIQKRLRADPIISAKMELTLARYRA 533
|
| >3fp2_A TPR repeat-containing protein YHR117W; TOM71, mitochondria translocation, allosteric REG phosphoprotein, TPR repeat, ATP-binding; 1.98A {Saccharomyces cerevisiae} PDB: 3fp3_A 3fp4_A 3lca_A Length = 537 | Back alignment and structure |
|---|
Score = 79.4 bits (196), Expect = 5e-16
Identities = 55/441 (12%), Positives = 115/441 (26%), Gaps = 91/441 (20%)
Query: 72 PKNAHAHFLLGLMYQRLGQPLKAVSSYEKAE--------------EILLRCEADIARPEL 117
P ++ A + LG A+ E L +A E
Sbjct: 90 PDHSKALLRRASANESLGNFTDAMFDLSVLSLNGDFDGASIEPMLERNLNKQAMKVLNEN 149
Query: 118 L------------SLVQIHHAQCLLPESSGDNSLDKELEPEELEEILSKLKESMQSDTRQ 165
L S + + +S++ + +LS + + S T
Sbjct: 150 LSKDEGRGSQVLPSNTSLASFFGIFDSHLEVSSVNTSSNYDTAYALLSDALQRLYSAT-D 208
Query: 166 AVVWNTLGLILLKSGRLQSSISVLSSLLAVDPNNCDCIGNLGIAYFQSGDMEQSAKCFQD 225
L+ + S +S + + N + GI +F ++ +
Sbjct: 209 EGYLVANDLLTKSTDMYHSLLSANTVDDPLRENAALALCYTGIFHFLKNNLLDAQVLL-Q 267
Query: 226 LILKDQNHPAALINYAALLLCKYGSVLAGAGANTGEGACLDQASAVNVAKECLLAALKAD 285
+ P + I A L K + + A+ +
Sbjct: 268 ESINLHPTPNSYIFLALTLADK------------EN---SQEF------FKFFQKAVDLN 306
Query: 286 PKAAHIWANLANAYYLTGDHRSSGKCLEKAAKLEPNCMSTRYAVAVSR---------IKD 336
P+ + + Y++ D++++ + +KA L P + +A
Sbjct: 307 PEYPPTYYHRGQMYFILQDYKNAKEDFQKAQSLNPENVYPYIQLACLLYKQGKFTESEAF 366
Query: 337 AERSQEPTEQLSWAGNEMASILRE-GDP----------VQIEPPIAWA----GFAAVQKT 381
++ L A IL + GD ++E G + T
Sbjct: 367 FNETKLKFPTLPEVPTFFAEILTDRGDFDTAIKQYDIAKRLEEVQEKIHVGIGPLIGKAT 426
Query: 382 HHEVAAAFETEENELSKMEECAGAGESAFLDQASAVNVAKECLLAALKADPKAAHIWANL 441
++ + + + K A + L A + DP++ L
Sbjct: 427 ILARQSSQDPTQLDEEKFNA------------------AIKLLTKACELDPRSEQAKIGL 468
Query: 442 ANAYYLTGDHRSSGKCLEKVL 462
A + + E
Sbjct: 469 AQLKLQMEKIDEAIELFEDSA 489
|
| >3fp2_A TPR repeat-containing protein YHR117W; TOM71, mitochondria translocation, allosteric REG phosphoprotein, TPR repeat, ATP-binding; 1.98A {Saccharomyces cerevisiae} PDB: 3fp3_A 3fp4_A 3lca_A Length = 537 | Back alignment and structure |
|---|
Score = 66.7 bits (163), Expect = 6e-12
Identities = 35/334 (10%), Positives = 91/334 (27%), Gaps = 54/334 (16%)
Query: 147 ELEEILSKLKESMQSDTRQAVVWNTLGLILLKSGRLQSSISVLSSLLAVDPNNCDCIGNL 206
E + + +++ D + V ++ + + +G L+ I + L + P++ +
Sbjct: 40 NFNEAIKYYQYAIELDPNEPVFYSNISACYISTGDLEKVIEFTTKALEIKPDHSKALLRR 99
Query: 207 GIAYFQSGDMEQSAKCFQDLILKDQNHPAALINYAALLLCKYGSVLAGAGANTGE---GA 263
A G+ + L L A++ L K + + E
Sbjct: 100 ASANESLGNFTDAMFDLSVLSLNGDFDGASIEPMLERNLNKQAMKVLNENLSKDEGRGSQ 159
Query: 264 CLDQASAVNVAKECLLAALKADPKAAHIWANLANAYY---LTGDHRSSGKCLEKAAKLEP 320
L +++ + L+ + A A L + ++ + A L
Sbjct: 160 VLPSNTSLASFFGIFDSHLEVSSVNTSSNYDTAYALLSDALQRLYSATDEGYLVANDLLT 219
Query: 321 NCMSTRYAVAVSRIKDAERSQEPTEQLSWAGNEMASILRE-GDP----------VQIEP- 368
Y + E + A + + + P
Sbjct: 220 KSTD-MYHSL---LSANTVDDPLRENAALALCYTGIFHFLKNNLLDAQVLLQESINLHPT 275
Query: 369 PIAWAGFAAVQKTHHEVAAAFETEENELSKMEECAGAGESAFLDQASAVNVAKECLLAAL 428
P ++ A + +E + A+
Sbjct: 276 PNSYIFLALTLA--------------DKENSQE------------------FFKFFQKAV 303
Query: 429 KADPKAAHIWANLANAYYLTGDHRSSGKCLEKVL 462
+P+ + + Y++ D++++ + +K
Sbjct: 304 DLNPEYPPTYYHRGQMYFILQDYKNAKEDFQKAQ 337
|
| >3fp2_A TPR repeat-containing protein YHR117W; TOM71, mitochondria translocation, allosteric REG phosphoprotein, TPR repeat, ATP-binding; 1.98A {Saccharomyces cerevisiae} PDB: 3fp3_A 3fp4_A 3lca_A Length = 537 | Back alignment and structure |
|---|
Score = 66.3 bits (162), Expect = 7e-12
Identities = 40/275 (14%), Positives = 78/275 (28%), Gaps = 43/275 (15%)
Query: 68 ARKMPKNAHAHFLLGLMYQRL-GQPLKAVSSYEKAEEILLRCEADIARPE----LLSLVQ 122
++ +P N G+ L + S+Y+ A +L + L++
Sbjct: 158 SQVLPSNTSLASFFGIFDSHLEVSSVNTSSNYDTAYALLSDALQRLYSATDEGYLVANDL 217
Query: 123 IHHAQCLLPESSGDNSLDKELEPE----------------ELEEILSKLKESMQSDTRQA 166
+ + + N++D L L + L+ES+
Sbjct: 218 LTKSTDMYHSLLSANTVDDPLRENAALALCYTGIFHFLKNNLLDAQVLLQESINLHPT-P 276
Query: 167 VVWNTLGLILLKSGRLQSSISVLSSLLAVDPNNCDCIGNLGIAYFQSGDMEQSAKCFQDL 226
+ L L L Q + ++P + G YF D + + + FQ
Sbjct: 277 NSYIFLALTLADKENSQEFFKFFQKAVDLNPEYPPTYYHRGQMYFILQDYKNAKEDFQKA 336
Query: 227 ILKDQNHPAALINYAALLLCKYGSVLAGAGANTGEGACLDQASAVNVAKECLLAALKADP 286
+ + I A LL G+ + ++ P
Sbjct: 337 QSLNPENVYPYIQLACLL------------YKQGK---FTE------SEAFFNETKLKFP 375
Query: 287 KAAHIWANLANAYYLTGDHRSSGKCLEKAAKLEPN 321
+ A GD ++ K + A +LE
Sbjct: 376 TLPEVPTFFAEILTDRGDFDTAIKQYDIAKRLEEV 410
|
| >3fp2_A TPR repeat-containing protein YHR117W; TOM71, mitochondria translocation, allosteric REG phosphoprotein, TPR repeat, ATP-binding; 1.98A {Saccharomyces cerevisiae} PDB: 3fp3_A 3fp4_A 3lca_A Length = 537 | Back alignment and structure |
|---|
Score = 54.0 bits (130), Expect = 6e-08
Identities = 39/279 (13%), Positives = 72/279 (25%), Gaps = 53/279 (18%)
Query: 72 PKNAHAHFLLGLMYQRLGQPLKAVSSYEKAEEI-------LLRC-----------EADIA 113
P + + Y G K + KA EI LLR +A
Sbjct: 56 PNEPVFYSNISACYISTGDLEKVIEFTTKALEIKPDHSKALLRRASANESLGNFTDAMFD 115
Query: 114 RPELLSLVQIHHAQCLLPESSGDNSLDKELEPEELEEILSKLKESMQSDTRQAVVWNTLG 173
L A N ++ E L + + + + S+T + + G
Sbjct: 116 LSVLSLNGDFDGASIEPMLERNLNKQAMKVLNENLSKDEGRGSQVLPSNTS---LASFFG 172
Query: 174 LI--------LLKSGRLQSSISVLSSLLAVDPNNCDCIGNLGIAYF--QSGDMEQSAKCF 223
+ + S ++ ++LS L + D + +
Sbjct: 173 IFDSHLEVSSVNTSSNYDTAYALLSDALQRLYSATDEGYLVANDLLTKSTDMYHSLLSAN 232
Query: 224 QDLILKDQNHPAALINYAALLLCKYGSVLAGAGANTGEGACLDQASAVNVAKECLLAALK 283
+N AL G + + A+ L ++
Sbjct: 233 TVDDPLRENAALALCY---------------------TGIFHFLKNNLLDAQVLLQESIN 271
Query: 284 ADPKAAHIWANLANAYYLTGDHRSSGKCLEKAAKLEPNC 322
P + + LA + + K +KA L P
Sbjct: 272 LHPT-PNSYIFLALTLADKENSQEFFKFFQKAVDLNPEY 309
|
| >3fp2_A TPR repeat-containing protein YHR117W; TOM71, mitochondria translocation, allosteric REG phosphoprotein, TPR repeat, ATP-binding; 1.98A {Saccharomyces cerevisiae} PDB: 3fp3_A 3fp4_A 3lca_A Length = 537 | Back alignment and structure |
|---|
Score = 52.8 bits (127), Expect = 1e-07
Identities = 28/235 (11%), Positives = 69/235 (29%), Gaps = 43/235 (18%)
Query: 72 PKNAHAHFLLGLMYQRLGQPLKAVSSYEKAEEILLRCEADIARPELLS-LVQIHHAQCLL 130
P+N + + L + + G+ ++ + + + + PE+ + +I +
Sbjct: 341 PENVYPYIQLACLLYKQGKFTESEAFFNETKLK------FPTLPEVPTFFAEILTDRGDF 394
Query: 131 PESSGDNSLDK--ELEPEELEEILSKLKESMQSDTRQAVVWNTLGLILLKSGRLQSSISV 188
+ D LE + + + + ++ L + ++I +
Sbjct: 395 DTA--IKQYDIAKRLEEVQEKIHVGIG--PLIGKATILARQSSQDPTQLDEEKFNAAIKL 450
Query: 189 LSSLLAVDPNNCDCIGNLGIAYFQSGDMEQSAKCFQDLILKDQNHPAALINYAALLLCKY 248
L+ +DP + L Q ++++ + F+D + + L
Sbjct: 451 LTKACELDPRSEQAKIGLAQLKLQMEKIDEAIELFEDSAILARTMDEKLQATT------- 503
Query: 249 GSVLAGAGANTGEGACLDQASAVNVAKECLLAALKADPKAAHIWANLANAYYLTG 303
A A + L+ADP + Y G
Sbjct: 504 ---FAEAAK--------------------IQKRLRADPIISAKMELTLARYRAKG 535
|
| >3fp2_A TPR repeat-containing protein YHR117W; TOM71, mitochondria translocation, allosteric REG phosphoprotein, TPR repeat, ATP-binding; 1.98A {Saccharomyces cerevisiae} PDB: 3fp3_A 3fp4_A 3lca_A Length = 537 | Back alignment and structure |
|---|
Score = 49.7 bits (119), Expect = 1e-06
Identities = 28/283 (9%), Positives = 65/283 (22%), Gaps = 62/283 (21%)
Query: 72 PKNAHAHFLLGLMYQRLGQPLKAVSSYEKAEEILLRCEADIARPELLSLVQIHH--AQCL 129
A G + +A+ Y+ A E+ P + + C
Sbjct: 22 QAYAVQLKNRGNHFFTAKNFNEAIKYYQYAIEL---------DPN---EPVFYSNISACY 69
Query: 130 LPESSGDNSLDKELEPEELEEILSKLKESMQSDTRQAVVWNTLGLILLKSGRLQSSISVL 189
+LE+++ ++++ + G ++ L
Sbjct: 70 -----------IST--GDLEKVIEFTTKALEIKPDHSKALLRRASANESLGNFTDAMFDL 116
Query: 190 SSLLAVDPNNCDCIGNLGIAYFQSGDMEQSAKCFQDLILKDQNHPAALINYAALLLCKYG 249
S L + G + +Q+ K + + KD+ + ++ L +G
Sbjct: 117 SVLSLNGDFD----GASIEPMLERNLNKQAMKVLNENLSKDEGRGSQVLPSNTSLASFFG 172
Query: 250 SV-------------------------------LAGAGANTGEGACLDQASAVNVAKECL 278
G +
Sbjct: 173 IFDSHLEVSSVNTSSNYDTAYALLSDALQRLYSATDEGYLVANDLLTKSTDMYHSLLSAN 232
Query: 279 LAALKADPKAAHIWANLANAYYLTGDHRSSGKCLEKAAKLEPN 321
AA ++L + + L+++ L P
Sbjct: 233 TVDDPLRENAALALCYTGIFHFLKNNLLDAQVLLQESINLHPT 275
|
| >3v6t_A DHAX3; tandem repeats, DNA specific binding protein, DNA binding DNA complex; HET: DNA; 1.85A {Xanthomonas} PDB: 3v6p_A 2kq5_A Length = 499 | Back alignment and structure |
|---|
Score = 82.5 bits (204), Expect = 4e-17
Identities = 45/395 (11%), Positives = 95/395 (24%), Gaps = 62/395 (15%)
Query: 72 PKNAHAHFLLGLMYQRLGQPLKAVSSYEKAEEILLRCEADIARPELLSLVQIHHAQCLLP 131
P+ A Q L + + +A + P+ V +
Sbjct: 69 PEQVVAIASHDGGKQALETVQRLLPVLCQAHGL---------TPQQ---VVAIASHDGGK 116
Query: 132 ESSGDNSLDKELEPEELEEILSKLKESMQSDTRQAVVWNTLGLILLKSGRLQSSISVLSS 191
++ ++ +L L ++ Q V + +Q+ + VL
Sbjct: 117 QALET-----------VQRLLPVLCQAHGLTPEQVVAIASHDGGKQALETVQALLPVLCQ 165
Query: 192 LLAVDPNNCDCIGNLGIAYFQSGDMEQSAKCFQDLILKDQNHPAALINYAALLLCKYGSV 251
+ P I + G +++ A+ +
Sbjct: 166 AHGLTPEQVVAIASNGGGKQALETVQRLLPVLCQAHGLTPQQVVAIASN----------- 214
Query: 252 LAGAGANTGEGACLDQASAVNVAKECLLAALKADPKAAHIWANLANAYYLTGDHRSSGKC 311
G V L A P+ A+ +
Sbjct: 215 ----------GGGKQALETVQRLLPVLCQAHGLTPQQVVAIASNGGGKQALETVQRLLPV 264
Query: 312 LEKAAKLEPNCMSTRYAVAVSRIKDAERSQEPTEQLSWAGNEMASILREGDPVQIEP--P 369
L +A L P VA++ +++ E ++L + + + + P
Sbjct: 265 LCQAHGLTPQ-----QVVAIASNSGGKQALETVQRL------LPVLCQ---AHGLTPQQV 310
Query: 370 IAWA--GFAAVQKTHHEVAAAFETEENELSKMEECAGAGESAFLDQASAVNVAKECLLAA 427
+A A G + + + L+ + A A V L A
Sbjct: 311 VAIASNGGGKQALETVQRLLPVLCQAHGLTPQQVVAIASHDGGKQALETVQRLLPVLCQA 370
Query: 428 LKADPKAAHIWANLANAYYLTGDHRSSGKCLEKVL 462
P+ A+ + L +
Sbjct: 371 HGLTPEQVVAIASNGGGKQALETVQRLLPVLCQAH 405
|
| >3v6t_A DHAX3; tandem repeats, DNA specific binding protein, DNA binding DNA complex; HET: DNA; 1.85A {Xanthomonas} PDB: 3v6p_A 2kq5_A Length = 499 | Back alignment and structure |
|---|
Score = 79.8 bits (197), Expect = 3e-16
Identities = 48/395 (12%), Positives = 93/395 (23%), Gaps = 62/395 (15%)
Query: 72 PKNAHAHFLLGLMYQRLGQPLKAVSSYEKAEEILLRCEADIARPELLSLVQIHHAQCLLP 131
P+ A Q L + +A L E +A + S A
Sbjct: 137 PEQVVAIASHDGGKQALETVQALLPVLCQA--HGLTPEQVVA---IASNGGGKQAL---- 187
Query: 132 ESSGDNSLDKELEPEELEEILSKLKESMQSDTRQAVVWNTLGLILLKSGRLQSSISVLSS 191
E ++ +L L ++ +Q V + G +Q + VL
Sbjct: 188 --------------ETVQRLLPVLCQAHGLTPQQVVAIASNGGGKQALETVQRLLPVLCQ 233
Query: 192 LLAVDPNNCDCIGNLGIAYFQSGDMEQSAKCFQDLILKDQNHPAALINYAALLLCKYGSV 251
+ P I + G +++ A+ +
Sbjct: 234 AHGLTPQQVVAIASNGGGKQALETVQRLLPVLCQAHGLTPQQVVAIASN----------- 282
Query: 252 LAGAGANTGEGACLDQASAVNVAKECLLAALKADPKAAHIWANLANAYYLTGDHRSSGKC 311
V L A P+ A+ +
Sbjct: 283 ----------SGGKQALETVQRLLPVLCQAHGLTPQQVVAIASNGGGKQALETVQRLLPV 332
Query: 312 LEKAAKLEPNCMSTRYAVAVSRIKDAERSQEPTEQLSWAGNEMASILREGDPVQIEPPIA 371
L +A L P VA++ +++ E ++L + + + + P
Sbjct: 333 LCQAHGLTPQ-----QVVAIASHDGGKQALETVQRL------LPVLCQ---AHGLTPEQV 378
Query: 372 WA----GFAAVQKTHHEVAAAFETEENELSKMEECAGAGESAFLDQASAVNVAKECLLAA 427
A G + + + L+ + A A V L A
Sbjct: 379 VAIASNGGGKQALETVQRLLPVLCQAHGLTPEQVVAIASHDGGKQALETVQRLLPVLCQA 438
Query: 428 LKADPKAAHIWANLANAYYLTGDHRSSGKCLEKVL 462
P+ A+ + + L
Sbjct: 439 HGLTPQQVVAIASNGGGRPALESIVAQLSRPDPAL 473
|
| >3v6t_A DHAX3; tandem repeats, DNA specific binding protein, DNA binding DNA complex; HET: DNA; 1.85A {Xanthomonas} PDB: 3v6p_A 2kq5_A Length = 499 | Back alignment and structure |
|---|
Score = 75.9 bits (187), Expect = 6e-15
Identities = 49/399 (12%), Positives = 97/399 (24%), Gaps = 57/399 (14%)
Query: 68 ARKMPKNAHAHFLLGLMYQRLGQPLKAVSSYEKAEEILLRCEADIARPELLSLVQIHHAQ 127
R P LL + + ++AV ++ A L PE
Sbjct: 26 LRGPPLQLDTGQLLKIAKRGGVTAVEAVHAWRNA----LTGAPLNLTPE--------QVV 73
Query: 128 CLLPESSGDNSLDKELEPEELEEILSKLKESMQSDTRQAVVWNTLGLILLKSGRLQSSIS 187
+ G +L E ++ +L L ++ +Q V + +Q +
Sbjct: 74 AIASHDGGKQAL------ETVQRLLPVLCQAHGLTPQQVVAIASHDGGKQALETVQRLLP 127
Query: 188 VLSSLLAVDPNNCDCIGNLGIAYFQSGDMEQSAKCFQDLILKDQNHPAALINYAALLLCK 247
VL + P I + ++ A+ +
Sbjct: 128 VLCQAHGLTPEQVVAIASHDGGKQALETVQALLPVLCQAHGLTPEQVVAIASN------- 180
Query: 248 YGSVLAGAGANTGEGACLDQASAVNVAKECLLAALKADPKAAHIWANLANAYYLTGDHRS 307
G V L A P+ A+ +
Sbjct: 181 --------------GGGKQALETVQRLLPVLCQAHGLTPQQVVAIASNGGGKQALETVQR 226
Query: 308 SGKCLEKAAKLEPNCMSTRYAVAVSRIKDAERSQEPTEQLSWAGNEMASILREGDPVQIE 367
L +A L P VA++ +++ E ++L + + + +
Sbjct: 227 LLPVLCQAHGLTPQ-----QVVAIASNGGGKQALETVQRL------LPVLCQA---HGLT 272
Query: 368 P--PIAWA--GFAAVQKTHHEVAAAFETEENELSKMEECAGAGESAFLDQASAVNVAKEC 423
P +A A + + + L+ + A A V
Sbjct: 273 PQQVVAIASNSGGKQALETVQRLLPVLCQAHGLTPQQVVAIASNGGGKQALETVQRLLPV 332
Query: 424 LLAALKADPKAAHIWANLANAYYLTGDHRSSGKCLEKVL 462
L A P+ A+ + L +
Sbjct: 333 LCQAHGLTPQQVVAIASHDGGKQALETVQRLLPVLCQAH 371
|
| >3v6t_A DHAX3; tandem repeats, DNA specific binding protein, DNA binding DNA complex; HET: DNA; 1.85A {Xanthomonas} PDB: 3v6p_A 2kq5_A Length = 499 | Back alignment and structure |
|---|
Score = 70.9 bits (174), Expect = 3e-13
Identities = 28/267 (10%), Positives = 62/267 (23%), Gaps = 48/267 (17%)
Query: 72 PKNAHAHFLLGLMYQRLGQPLKAVSSYEKAEEILLRCEADIARPELLSLVQIHHAQCLLP 131
P+ A Q L + + +A + P+ + +
Sbjct: 273 PQQVVAIASNSGGKQALETVQRLLPVLCQAHGL---------TPQQ-VVAIASNGGGK-- 320
Query: 132 ESSGDNSLDKELEPEELEEILSKLKESMQSDTRQAVVWNTLGLILLKSGRLQSSISVLSS 191
+ LE ++ +L L ++ +Q V + +Q + VL
Sbjct: 321 ---------QALE--TVQRLLPVLCQAHGLTPQQVVAIASHDGGKQALETVQRLLPVLCQ 369
Query: 192 LLAVDPNNCDCIGNLGIAYFQSGDMEQSAKCFQDLILKDQNHPAALINYAALLLCKYGSV 251
+ P I + G +++ A+ ++
Sbjct: 370 AHGLTPEQVVAIASNGGGKQALETVQRLLPVLCQAHGLTPEQVVAIASH----------- 418
Query: 252 LAGAGANTGEGACLDQASAVNVAKECLLAALKADPKAAHIWANLANAYYLTGDHRSSGKC 311
V L A P+ A+ +
Sbjct: 419 ----------DGGKQALETVQRLLPVLCQAHGLTPQQVVAIASNGGGRPALESIVAQLSR 468
Query: 312 LEKAAKLEPNCMSTRYAVAVSRIKDAE 338
+ A N + VA++ +
Sbjct: 469 PDPALAALTN----DHLVALACLGGRP 491
|
| >3v6t_A DHAX3; tandem repeats, DNA specific binding protein, DNA binding DNA complex; HET: DNA; 1.85A {Xanthomonas} PDB: 3v6p_A 2kq5_A Length = 499 | Back alignment and structure |
|---|
Score = 43.6 bits (103), Expect = 1e-04
Identities = 29/283 (10%), Positives = 57/283 (20%), Gaps = 65/283 (22%)
Query: 180 GRLQSSISVLSSLLAVDPNNCDCIGNLGIAYFQSGDMEQSAKCFQDLILKDQNHPAALIN 239
L + + L +D I G + A+ +
Sbjct: 18 ALLTVAGELRGPPLQLDTGQLLKIAKRGGVTAVEAVHAWRNALTGAPLNLTPEQVVAIAS 77
Query: 240 YAALLLCKYGSVLAGAGANTGEGACLDQASAVNVAKECLLAALKADPKAAHIWANLANAY 299
+ V L A P+ A+
Sbjct: 78 H---------------------DGGKQALETVQRLLPVLCQAHGLTPQQVVAIASHDGGK 116
Query: 300 YLTGDHRSSGKCLEKAAKLEPNCMSTRYAVAVSRIKDAERSQEPTEQLSWAGNEMASILR 359
+ L +A L P VA++ +++ E + L + +
Sbjct: 117 QALETVQRLLPVLCQAHGLTPE-----QVVAIASHDGGKQALETVQALLPVLCQAHGL-- 169
Query: 360 EGDPVQIEPPIAWAGFAAVQKTHHEVAAAFETEENELSKMEECAGAGESAFLDQASAVNV 419
P E +A A ++ L ++
Sbjct: 170 --TP---EQVVAIASNGGGKQ--------------ALETVQR------------------ 192
Query: 420 AKECLLAALKADPKAAHIWANLANAYYLTGDHRSSGKCLEKVL 462
L A P+ A+ + L +
Sbjct: 193 LLPVLCQAHGLTPQQVVAIASNGGGKQALETVQRLLPVLCQAH 235
|
| >3u4t_A TPR repeat-containing protein; structural genomics, PSI- protein structure initiative, northeast structural genomics consortium, NESG; 2.28A {Cytophaga hutchinsonii} Length = 272 | Back alignment and structure |
|---|
Score = 78.1 bits (193), Expect = 2e-16
Identities = 30/272 (11%), Positives = 69/272 (25%), Gaps = 44/272 (16%)
Query: 74 NAHAHFLLGLMYQRLGQPLKAVSSYEKAEEILLRCEADIARPELLSLVQIHHAQCLLPES 133
N F + +A+ + K E P + +
Sbjct: 2 NDDVEFRYADFLFKNNNYAEAIEVFNKLEAK------KYNSPYIYNRR------------ 43
Query: 134 SGDNSLDKELEPEELEEILSKLKESMQSDTRQAVVWNTLGLILLKSGRLQSSISVLSSLL 193
+ + + ++ + + + ++ + G IL+K G+ +I + +
Sbjct: 44 -AVCYYELA-KYDLAQKDIETYFSKVNATKAKSADFEYYGKILMKKGQDSLAIQQYQAAV 101
Query: 194 AVDPNNCDCIGNLGIAYFQSGDMEQSAKCFQDLILKDQNHPAALINYAALLLCK------ 247
D D G +G ++ G+ + + + I P
Sbjct: 102 DRDTTRLDMYGQIGSYFYNKGNFPLAIQYMEKQIRPTTTDPKVFYELGQAYYYNKEYVKA 161
Query: 248 ---YGSVL------AGAGANTGEG-ACLDQASAVNVAKECLLAALKADPKAAHI------ 291
+ VL A D + +AK ++
Sbjct: 162 DSSFVKVLELKPNIYIGYLWRARANAAQDPDTKQGLAKPYYEKLIEVCAPGGAKYKDELI 221
Query: 292 --WANLANAYYLTGDHRSSGKCLEKAAKLEPN 321
+A Y + D + + L+P
Sbjct: 222 EANEYIAYYYTINRDKVKADAAWKNILALDPT 253
|
| >3u4t_A TPR repeat-containing protein; structural genomics, PSI- protein structure initiative, northeast structural genomics consortium, NESG; 2.28A {Cytophaga hutchinsonii} Length = 272 | Back alignment and structure |
|---|
Score = 70.8 bits (174), Expect = 6e-14
Identities = 35/302 (11%), Positives = 75/302 (24%), Gaps = 53/302 (17%)
Query: 168 VWNTLGLILLKSGRLQSSISVLSSLLAVDPNNCDCIGNLGIAYFQSGDMEQ---SAKCFQ 224
V L K+ +I V + L A N+ + Y++ + + +
Sbjct: 5 VEFRYADFLFKNNNYAEAIEVFNKLEAKKYNSPYIYNRRAVCYYELAKYDLAQKDIETYF 64
Query: 225 DLILKDQNHPAALINYAALL--LCKYGSVLAG-----------AGANTGEGACLDQASAV 271
+ + A Y +L + + G+
Sbjct: 65 SKVNATKAKSADFEYYGKILMKKGQDSLAIQQYQAAVDRDTTRLDMYGQIGSYFYNKGNF 124
Query: 272 NVAKECLLAALKADPKAAHIWANLANAYYLTGDHRSSGKCLEKAAKLEPNCMSTRYAVAV 331
+A + + ++ ++ L AYY ++ + K +L+PN +
Sbjct: 125 PLAIQYMEKQIRPTTTDPKVFYELGQAYYYNKEYVKADSSFVKVLELKPN-----IYIGY 179
Query: 332 SRIKDAERSQEPTEQLSWAGN--EMASILREGDPVQIEPPIAWAGFAAVQKTHHEVAAAF 389
A +Q+P + A E + + + + A + +A +
Sbjct: 180 LWRARANAAQDPDTKQGLAKPYYEKLIEVCAPGGAKYKDELIEA--------NEYIAYYY 231
Query: 390 ETEENELSKMEECAGAGESAFLDQASAVNVAKECLLAALKADPKAAHIWANLANAYYLTG 449
+ A L DP L
Sbjct: 232 T----INRDKVK------------------ADAAWKNILALDPTNKKAIDGLKMKLEHHH 269
Query: 450 DH 451
H
Sbjct: 270 HH 271
|
| >3u4t_A TPR repeat-containing protein; structural genomics, PSI- protein structure initiative, northeast structural genomics consortium, NESG; 2.28A {Cytophaga hutchinsonii} Length = 272 | Back alignment and structure |
|---|
Score = 61.1 bits (149), Expect = 1e-10
Identities = 24/239 (10%), Positives = 48/239 (20%), Gaps = 43/239 (17%)
Query: 72 PKNAHAHFLLGLMYQRLGQPLKAVSSYEKAEEILLRCEADIARPELLSLVQIHH--AQCL 129
+ G + + GQ A+ Y+ A + + ++
Sbjct: 71 KAKSADFEYYGKILMKKGQDSLAIQQYQAAVDR---------DTT---RLDMYGQIGSYF 118
Query: 130 LPESSGDNSLDKELEPEELEEILSKLKESMQSDTRQAVVWNTLGLILLKSGRLQSSISVL 189
+ +++ ++ T V+ LG + + S
Sbjct: 119 -----------YNK--GNFPLAIQYMEKQIRPTTTDPKVFYELGQAYYYNKEYVKADSSF 165
Query: 190 SSLLAVDPNNCDCIGNLGIAYF---QSGDMEQSAKCFQDLILKDQNHPAALINYAALLLC 246
+L + PN A + ++ LI A +
Sbjct: 166 VKVLELKPNIYIGYLWRARANAAQDPDTKQGLAKPYYEKLIEVCAPGGAKYKDELIEANE 225
Query: 247 KYGSVLAGAGANTGEGACLDQASAVNVAKECLLAALKADPKAAHIWANLANAYYLTGDH 305
A L DP L H
Sbjct: 226 YIAYYYTINRDKVK-------------ADAAWKNILALDPTNKKAIDGLKMKLEHHHHH 271
|
| >3hym_B Cell division cycle protein 16 homolog; APC, anaphase promoting complex, cell cycle, mitosis, cyclosome, TPR, ubiquitin, ubiquitin ligase, twinning; 2.80A {Homo sapiens} Length = 330 | Back alignment and structure |
|---|
Score = 77.7 bits (192), Expect = 5e-16
Identities = 39/333 (11%), Positives = 87/333 (26%), Gaps = 59/333 (17%)
Query: 149 EEILSKLKESMQSDTRQAVVWNTLGLILLKSGRLQSSISVLSSLLAVDPNNCDCIGNLGI 208
+ + + ES+ V +L + + + S ++ DP + C+
Sbjct: 5 KPSETVIPESVDGLQENLDVVVSLAERHYYNCDFKMCYKLTSVVMEKDPFHASCLPVHIG 64
Query: 209 AYFQSGDMEQSAKCFQDLILKDQNHPAALINYAALLLCKYGSVLAGAGANTGEGACLDQA 268
+ + L+ ++P + L G +
Sbjct: 65 TLVELNKANELFYLSHKLVDLYPSNPVSWFAVGCYYLMV--------------GHKNEH- 109
Query: 269 SAVNVAKECLLAALKADPKAAHIWANLANAYYLTGDHRSSGKCLEKAAKLEPNCMSTRYA 328
A+ L A + W +++ + +H + AA+L C
Sbjct: 110 -----ARRYLSKATTLEKTYGPAWIAYGHSFAVESEHDQAMAAYFTAAQLMKGCHLPMLY 164
Query: 329 VAV-----SRIKDAERSQE------PTEQLSWAGNEMASILREGDPVQIEPPIAWAGFAA 377
+ + + K AER P + +E+ + +
Sbjct: 165 IGLEYGLTNNSKLAERFFSQALSIAPEDPFVM--HEVGVVAFQ----------------- 205
Query: 378 VQKTHHEVAAAFET--EENELSKMEECAGAGESAFLDQASA------VNVAKECLLAALK 429
F E+ + E E + A + AL
Sbjct: 206 -NGEWKTAEKWFLDALEKIKAIGNEVTVDKWEPLLNNLGHVCRKLKKYAEALDYHRQALV 264
Query: 430 ADPKAAHIWANLANAYYLTGDHRSSGKCLEKVL 462
P+ A ++ + + L G+ ++ L
Sbjct: 265 LIPQNASTYSAIGYIHSLMGNFENAVDYFHTAL 297
|
| >3hym_B Cell division cycle protein 16 homolog; APC, anaphase promoting complex, cell cycle, mitosis, cyclosome, TPR, ubiquitin, ubiquitin ligase, twinning; 2.80A {Homo sapiens} Length = 330 | Back alignment and structure |
|---|
Score = 75.4 bits (186), Expect = 4e-15
Identities = 44/280 (15%), Positives = 89/280 (31%), Gaps = 47/280 (16%)
Query: 64 LVHVARKM----PKNAHAHFLLGLMYQRLGQPL-KAVSSYEKAEEILLRCEADIARPELL 118
L +++ K+ P N + F +G Y +G A KA +
Sbjct: 75 LFYLSHKLVDLYPSNPVSWFAVGCYYLMVGHKNEHARRYLSKATTL---------EKTY- 124
Query: 119 SLVQIHHAQCLLPESSGDNSLDKELEPEELEEILSKLKESMQSDTRQAVVWNTLGLILLK 178
A G +S E E ++ ++ + Q + +GL
Sbjct: 125 -----GPAWIAY----G-HSFAVE---SEHDQAMAAYFTAAQLMKGCHLPMLYIGLEYGL 171
Query: 179 SGRLQSSISVLSSLLAVDPNNCDCIGNLGIAYFQSGDMEQSAKCFQD-LILKDQNHPAAL 237
+ + + S L++ P + + +G+ FQ+G+ + + K F D L
Sbjct: 172 TNNSKLAERFFSQALSIAPEDPFVMHEVGVVAFQNGEWKTAEKWFLDALEKIKAIGNEVT 231
Query: 238 INYAALLLCKYGSVLAGAGANTGEGACLDQASAVNVAKECLLAALKADPKAAHIWANLAN 297
++ LL G V + A + AL P+ A ++ +
Sbjct: 232 VDKWEPLLNNLGHVCRKLK-------KYAE------ALDYHRQALVLIPQNASTYSAIGY 278
Query: 298 AYYLTGDHRSSGKCLEKAAKLEPNCMSTRYAVAVSRIKDA 337
+ L G+ ++ A L + +V+ +
Sbjct: 279 IHSLMGNFENAVDYFHTALGLRRD-----DTFSVTMLGHC 313
|
| >3hym_B Cell division cycle protein 16 homolog; APC, anaphase promoting complex, cell cycle, mitosis, cyclosome, TPR, ubiquitin, ubiquitin ligase, twinning; 2.80A {Homo sapiens} Length = 330 | Back alignment and structure |
|---|
Score = 61.2 bits (149), Expect = 1e-10
Identities = 17/150 (11%), Positives = 53/150 (35%), Gaps = 14/150 (9%)
Query: 72 PKNAHAHFLLGLMYQRLGQPLKAVSSYEKAEEILLRCEADIARPELLSLVQIHHAQCLLP 131
P++ +G++ + G+ A + A E + ++ + L +
Sbjct: 190 PEDPFVMHEVGVVAFQNGEWKTAEKWFLDALEKIKAIGNEVTVDKWEPL-LNNLGHVC-- 246
Query: 132 ESSGDNSLDKELEPEELEEILSKLKESMQSDTRQAVVWNTLGLILLKSGRLQSSISVLSS 191
++L+ + E L ++++ + A ++ +G I G ++++ +
Sbjct: 247 ---------RKLK--KYAEALDYHRQALVLIPQNASTYSAIGYIHSLMGNFENAVDYFHT 295
Query: 192 LLAVDPNNCDCIGNLGIAYFQSGDMEQSAK 221
L + ++ + LG ++
Sbjct: 296 ALGLRRDDTFSVTMLGHCIEMYIGDSEAYI 325
|
| >3hym_B Cell division cycle protein 16 homolog; APC, anaphase promoting complex, cell cycle, mitosis, cyclosome, TPR, ubiquitin, ubiquitin ligase, twinning; 2.80A {Homo sapiens} Length = 330 | Back alignment and structure |
|---|
Score = 59.2 bits (144), Expect = 7e-10
Identities = 20/243 (8%), Positives = 57/243 (23%), Gaps = 53/243 (21%)
Query: 72 PKNAHAHFLLGLMYQRLGQPLKAVSSYEKAEEILLRCEADIARPELLSLVQIHHAQCLLP 131
A G + + +A+++Y A + P +L + +
Sbjct: 122 KTYGPAWIAYGHSFAVESEHDQAMAAYFTA----AQLMKGCHLP-MLYIGLEYGLT---- 172
Query: 132 ESSGDNSLDKELEPEELEEILSKLKESMQSDTRQAVVWNTLGLILLKSGRLQSSISVL-- 189
+ +++ V + +G++ ++G +++
Sbjct: 173 --------------NNSKLAERFFSQALSIAPEDPFVMHEVGVVAFQNGEWKTAEKWFLD 218
Query: 190 -------SSLLAVDPNNCDCIGNLGIAYFQSGDMEQSAKCFQDLILKDQNHPAALINYAA 242
+ NLG + ++ + ++ + +
Sbjct: 219 ALEKIKAIGNEVTVDKWEPLLNNLGHVCRKLKKYAEALDYHRQALVLIPQNASTYSAI-- 276
Query: 243 LLLCKYGSVLAGAGANTGEGACLDQASAVNVAKECLLAALKADPKAAHIWANLANAYYLT 302
G + + G N A + AL L + +
Sbjct: 277 ------GYIHSLMG-NFEN------------AVDYFHTALGLRRDDTFSVTMLGHCIEMY 317
Query: 303 GDH 305
Sbjct: 318 IGD 320
|
| >3hym_B Cell division cycle protein 16 homolog; APC, anaphase promoting complex, cell cycle, mitosis, cyclosome, TPR, ubiquitin, ubiquitin ligase, twinning; 2.80A {Homo sapiens} Length = 330 | Back alignment and structure |
|---|
Score = 58.5 bits (142), Expect = 1e-09
Identities = 27/252 (10%), Positives = 61/252 (24%), Gaps = 45/252 (17%)
Query: 71 MPKNAHAHFLLGLMYQRLGQPLKAVSSYEKAEEILLRCEADIARPELLSLVQIHHAQCLL 130
+ +N L + E D L + H L
Sbjct: 18 LQENLDVVVSLAERHYYNCDFKMCYKLTSVVMEK------DPFHASCLPV----HIGTL- 66
Query: 131 PESSGDNSLDKELEPEELEEILSKLKESMQSDTRQAVVWNTLGLILLKSGRL-QSSISVL 189
EL + E+ + + V W +G L G + + L
Sbjct: 67 ----------VEL--NKANELFYLSHKLVDLYPSNPVSWFAVGCYYLMVGHKNEHARRYL 114
Query: 190 SSLLAVDPNNCDCIGNLGIAYFQSGDMEQSAKCFQDLILKDQNHPAALINYAALLLCKYG 249
S ++ G ++ + +Q+ + + ++
Sbjct: 115 SKATTLEKTYGPAWIAYGHSFAVESEHDQAMAAYFTAAQLMKGCHLPMLYI--------- 165
Query: 250 SVLAGAGANTGEGACLDQASAVNVAKECLLAALKADPKAAHIWANLANAYYLTGDHRSSG 309
G + +A+ AL P+ + + + G+ +++
Sbjct: 166 ------------GLEYGLTNNSKLAERFFSQALSIAPEDPFVMHEVGVVAFQNGEWKTAE 213
Query: 310 KCLEKAAKLEPN 321
K A +
Sbjct: 214 KWFLDALEKIKA 225
|
| >3hym_B Cell division cycle protein 16 homolog; APC, anaphase promoting complex, cell cycle, mitosis, cyclosome, TPR, ubiquitin, ubiquitin ligase, twinning; 2.80A {Homo sapiens} Length = 330 | Back alignment and structure |
|---|
Score = 57.7 bits (140), Expect = 2e-09
Identities = 24/182 (13%), Positives = 51/182 (28%), Gaps = 24/182 (13%)
Query: 68 ARKMPKNAHAHFLLGLMYQRLGQPLKAVSSYEKAEEI-----LLRCEADIARPELLSLVQ 122
A+ M +GL Y A + +A I + E + +
Sbjct: 152 AQLMKGCHLPMLYIGLEYGLTNNSKLAERFFSQALSIAPEDPFVMHEVGVV---AFQNGE 208
Query: 123 IHHAQCLLPESSGDNSLDKELEPEELEEILSKLKESMQSDTRQAVVWNTLGLILLKSGRL 182
A+ LE K + + + + N LG + K +
Sbjct: 209 WKTAE---------KWFLDALE-------KIKAIGNEVTVDKWEPLLNNLGHVCRKLKKY 252
Query: 183 QSSISVLSSLLAVDPNNCDCIGNLGIAYFQSGDMEQSAKCFQDLILKDQNHPAALINYAA 242
++ L + P N +G + G+ E + F + ++ ++
Sbjct: 253 AEALDYHRQALVLIPQNASTYSAIGYIHSLMGNFENAVDYFHTALGLRRDDTFSVTMLGH 312
Query: 243 LL 244
+
Sbjct: 313 CI 314
|
| >4abn_A Tetratricopeptide repeat protein 5; P53 cofactor, stress-response, DNA repair, gene regulation; 2.05A {Mus musculus} Length = 474 | Back alignment and structure |
|---|
Score = 77.4 bits (190), Expect = 2e-15
Identities = 46/254 (18%), Positives = 94/254 (37%), Gaps = 28/254 (11%)
Query: 77 AHFLLGLMYQRLGQPLKAVSSYEKAEEILLRCEADIARPELLSLVQIHHAQCLLPESSGD 136
+H Q++G+ E+A+ +L + + + + L + + + E +G
Sbjct: 19 SHMASMTGGQQMGRGSMMADEEEEAKHVLQKLQGLV---DRLYCFRDSYFETHSVEDAGR 75
Query: 137 NSLDKELEPEELEEILSKLKESMQSDTRQAVVWNTLGLILLKSGR-LQSSISVLSSLLAV 195
D + EE+E+ L +++E + S +A G L + + +LS + +
Sbjct: 76 KQQDVQ---EEMEKTLQQMEEVLGSAQVEAQALMLKGKALNVTPDYSPEAEVLLSKAVKL 132
Query: 196 DPNNCDCIGNLGIAYFQSGDMEQSAKCFQDLILKDQNHPAALINYAALLLCKYGSVLAGA 255
+P + LG Y++ GD+ + CF + +N + L VL
Sbjct: 133 EPELVEAWNQLGEVYWKKGDVTSAHTCFSGALTHCKNKVS---------LQNLSMVLRQL 183
Query: 256 GANTGEGACLDQASAVNVAKECLLAALKADPKAAHIWANLANAYYLT--------GDHRS 307
++G+ +V AK A++ D W L NAY +
Sbjct: 184 QTDSGDEHSRHVMDSVRQAKL----AVQMDVLDGRSWYILGNAYLSLYFNTGQNPKISQQ 239
Query: 308 SGKCLEKAAKLEPN 321
+ +A K++
Sbjct: 240 ALSAYAQAEKVDRK 253
|
| >4abn_A Tetratricopeptide repeat protein 5; P53 cofactor, stress-response, DNA repair, gene regulation; 2.05A {Mus musculus} Length = 474 | Back alignment and structure |
|---|
Score = 59.6 bits (144), Expect = 9e-10
Identities = 45/313 (14%), Positives = 90/313 (28%), Gaps = 73/313 (23%)
Query: 171 TLGLILLKSGRLQSSISVLSSLLAVDPNNCDCIGNLGIAYFQS--------------GDM 216
T G + + + +L D + +YF++ +M
Sbjct: 25 TGGQQMGRGSMMADEEEEAKHVLQKLQGLVDRLYCFRDSYFETHSVEDAGRKQQDVQEEM 84
Query: 217 EQSAKCFQDLILKDQNHPAALINYAALLLCKYGSVLAGAGANTGEGACLDQASAVNVAKE 276
E++ + ++++ Q AL+ G L + E A+
Sbjct: 85 EKTLQQMEEVLGSAQVEAQALMLK--------GKALNVTPDYSPE------------AEV 124
Query: 277 CLLAALKADPKAAHIWANLANAYYLTGDHRSSGKCLEKAAKLEPNCMSTRYAVAVSRIKD 336
L A+K +P+ W L Y+ GD S+ C A N V++ +
Sbjct: 125 LLSKAVKLEPELVEAWNQLGEVYWKKGDVTSAHTCFSGALTHCKN------KVSLQNLSM 178
Query: 337 AERSQEPTEQLSWAGNEMASILREGDPVQIEP--PIAWA--GFAAVQKTHHEVAAAFETE 392
R + + + M S+ + VQ++ +W G A + +
Sbjct: 179 VLRQLQTDSGDEHSRHVMDSVRQAKLAVQMDVLDGRSWYILGNAY--------LSLYFNT 230
Query: 393 ENELSKMEECAGAGESAFLDQASAVNVAKECLLAALKADPKA---AHIWANLANAYYLTG 449
++ A A K D KA + N A +
Sbjct: 231 GQNPKISQQ------------------ALSAYAQAEKVDRKASSNPDLHLNRATLHKYEE 272
Query: 450 DHRSSGKCLEKVL 462
+ + + +
Sbjct: 273 SYGEALEGFSQAA 285
|
| >4abn_A Tetratricopeptide repeat protein 5; P53 cofactor, stress-response, DNA repair, gene regulation; 2.05A {Mus musculus} Length = 474 | Back alignment and structure |
|---|
Score = 59.3 bits (143), Expect = 1e-09
Identities = 40/263 (15%), Positives = 78/263 (29%), Gaps = 45/263 (17%)
Query: 72 PKNAHAHFLLGLMYQRLGQPLKAVSSYEKAEEILLRCEADIARPELLSLVQIHHAQCLLP 131
P+ A LG +Y + G A + + A L C+ ++ L +L +
Sbjct: 134 PELVEAWNQLGEVYWKKGDVTSAHTCFSGA---LTHCKNKVS---LQNLSMVLRQLQTDS 187
Query: 132 ESSGDNSLDKELEPEELEEILSKLKESMQSDTRQAVVWNTLGLILLKS--------GRLQ 183
+ + + + + K ++Q D W LG L Q
Sbjct: 188 G---------DEHSRHVMDSVRQAKLAVQMDVLDGRSWYILGNAYLSLYFNTGQNPKISQ 238
Query: 184 SSISVLSSLLAVD---PNNCDCIGNLGIAYFQSGDMEQSAKCFQDLILKDQNHPAALINY 240
++S + VD +N D N + ++ + F D P
Sbjct: 239 QALSAYAQAEKVDRKASSNPDLHLNRATLHKYEESYGEALEGFSQAAALDPAWPEPQQRE 298
Query: 241 AALL--LCKYGSVLAGAGANTGEGACLDQASAVNVAKECLLAALKADPKAAHIWANLANA 298
LL L + S+L + + +L +L+ +
Sbjct: 299 QQLLEFLSRLTSLL----------ESKGKTKPKKLQS--MLGSLR-----PAHLGPCGDG 341
Query: 299 YYLTGDHRSSGKCLEKAAKLEPN 321
Y + + L+ + L+P
Sbjct: 342 RYQSASGQKMTLELKPLSTLQPG 364
|
| >3tax_A UDP-N-acetylglucosamine--peptide N- acetylglucosaminyltransferase 110 kDa subunit...; thiocarbamate crosslink, covalent inhibitor, gylcosyltransfe inhibitor, O-GLCNAC transferase; HET: UDP; 1.88A {Homo sapiens} PDB: 3pe3_A* 3pe4_A* Length = 723 | Back alignment and structure |
|---|
Score = 77.5 bits (190), Expect = 3e-15
Identities = 31/158 (19%), Positives = 57/158 (36%), Gaps = 21/158 (13%)
Query: 164 RQAVVWNTLGLILLKSGRLQSSISVLSSLLAVDPNNCDCIGNLGIAYFQSGDMEQSAKCF 223
A N L I + G ++ ++ + L V P NL Q G ++++ +
Sbjct: 7 THADSLNNLANIKREQGNIEEAVRLYRKALEVFPEFAAAHSNLASVLQQQGKLQEALMHY 66
Query: 224 QDLILKDQNHPAALINYAALLLCKYGSVLAGAGANTGEGACLDQASAVNVAKECLLAALK 283
++ I A N G L + V A +C A++
Sbjct: 67 KEAIRISPTFADAYSNM---------------------GNTLKEMQDVQGALQCYTRAIQ 105
Query: 284 ADPKAAHIWANLANAYYLTGDHRSSGKCLEKAAKLEPN 321
+P A +NLA+ + +G+ + A KL+P+
Sbjct: 106 INPAFADAHSNLASIHKDSGNIPEAIASYRTALKLKPD 143
|
| >3tax_A UDP-N-acetylglucosamine--peptide N- acetylglucosaminyltransferase 110 kDa subunit...; thiocarbamate crosslink, covalent inhibitor, gylcosyltransfe inhibitor, O-GLCNAC transferase; HET: UDP; 1.88A {Homo sapiens} PDB: 3pe3_A* 3pe4_A* Length = 723 | Back alignment and structure |
|---|
Score = 73.7 bits (180), Expect = 4e-14
Identities = 35/173 (20%), Positives = 69/173 (39%), Gaps = 23/173 (13%)
Query: 72 PKNAHAHFLLGLMYQRLGQPLKAVSSYEKAEEILLRCEADIARPELLSLVQIHHAQCLLP 131
P +A + L + + G +AV Y KA E+ PE A L
Sbjct: 6 PTHADSLNNLANIKREQGNIEEAVRLYRKALEV---------FPEF------AAAHSNL- 49
Query: 132 ESSGDNSLDKELEPEELEEILSKLKESMQSDTRQAVVWNTLGLILLKSGRLQSSISVLSS 191
+ L ++ +L+E L KE+++ A ++ +G L + +Q ++ +
Sbjct: 50 ---A-SVL-QQQG--KLQEALMHYKEAIRISPTFADAYSNMGNTLKEMQDVQGALQCYTR 102
Query: 192 LLAVDPNNCDCIGNLGIAYFQSGDMEQSAKCFQDLILKDQNHPAALINYAALL 244
+ ++P D NL + SG++ ++ ++ + + P A N A L
Sbjct: 103 AIQINPAFADAHSNLASIHKDSGNIPEAIASYRTALKLKPDFPDAYCNLAHCL 155
|
| >3tax_A UDP-N-acetylglucosamine--peptide N- acetylglucosaminyltransferase 110 kDa subunit...; thiocarbamate crosslink, covalent inhibitor, gylcosyltransfe inhibitor, O-GLCNAC transferase; HET: UDP; 1.88A {Homo sapiens} PDB: 3pe3_A* 3pe4_A* Length = 723 | Back alignment and structure |
|---|
Score = 67.9 bits (165), Expect = 3e-12
Identities = 27/174 (15%), Positives = 61/174 (35%), Gaps = 21/174 (12%)
Query: 148 LEEILSKLKESMQSDTRQAVVWNTLGLILLKSGRLQSSISVLSSLLAVDPNNCDCIGNLG 207
+EE + +++++ A + L +L + G+LQ ++ + + P D N+G
Sbjct: 25 IEEAVRLYRKALEVFPEFAAAHSNLASVLQQQGKLQEALMHYKEAIRISPTFADAYSNMG 84
Query: 208 IAYFQSGDMEQSAKCFQDLILKDQNHPAALINYAALLLCKYGSVLAGAGANTGEGACLDQ 267
+ D++ + +C+ I + A N +
Sbjct: 85 NTLKEMQDVQGALQCYTRAIQINPAFADAHSNL---------------------ASIHKD 123
Query: 268 ASAVNVAKECLLAALKADPKAAHIWANLANAYYLTGDHRSSGKCLEKAAKLEPN 321
+ + A ALK P + NLA+ + D + ++K + +
Sbjct: 124 SGNIPEAIASYRTALKLKPDFPDAYCNLAHCLQIVCDWTDYDERMKKLVSIVAD 177
|
| >3tax_A UDP-N-acetylglucosamine--peptide N- acetylglucosaminyltransferase 110 kDa subunit...; thiocarbamate crosslink, covalent inhibitor, gylcosyltransfe inhibitor, O-GLCNAC transferase; HET: UDP; 1.88A {Homo sapiens} PDB: 3pe3_A* 3pe4_A* Length = 723 | Back alignment and structure |
|---|
Score = 55.6 bits (133), Expect = 2e-08
Identities = 27/172 (15%), Positives = 55/172 (31%), Gaps = 23/172 (13%)
Query: 72 PKNAHAHFLLGLMYQRLGQPLKAVSSYEKAEEILLRCEADIARPELLSLVQIHHAQCLLP 131
P+ A AH L + Q+ G+ +A+ Y++A +R A ++ +
Sbjct: 40 PEFAAAHSNLASVLQQQGKLQEALMHYKEA----IRISPTFADA-YSNMGNTLKEMQDVQ 94
Query: 132 ESSGDNSLDKELEPEELEEILSKLKESMQSDTRQAVVWNTLGLILLKSGRLQSSISVLSS 191
+ L ++Q + A + L I SG + +I+ +
Sbjct: 95 GA------------------LQCYTRAIQINPAFADAHSNLASIHKDSGNIPEAIASYRT 136
Query: 192 LLAVDPNNCDCIGNLGIAYFQSGDMEQSAKCFQDLILKDQNHPAALINYAAL 243
L + P+ D NL D + + L+ + +
Sbjct: 137 ALKLKPDFPDAYCNLAHCLQIVCDWTDYDERMKKLVSIVADQLEKNRLPSVH 188
|
| >3tax_A UDP-N-acetylglucosamine--peptide N- acetylglucosaminyltransferase 110 kDa subunit...; thiocarbamate crosslink, covalent inhibitor, gylcosyltransfe inhibitor, O-GLCNAC transferase; HET: UDP; 1.88A {Homo sapiens} PDB: 3pe3_A* 3pe4_A* Length = 723 | Back alignment and structure |
|---|
Score = 48.3 bits (114), Expect = 4e-06
Identities = 32/183 (17%), Positives = 61/183 (33%), Gaps = 18/183 (9%)
Query: 284 ADPKAAHIWANLANAYYLTGDHRSSGKCLEKAAKLEPNCMSTRYAVAVSRIKDAERSQEP 343
+ P A NLAN G+ + + KA ++ P + +A + + QE
Sbjct: 4 SCPTHADSLNNLANIKREQGNIEEAVRLYRKALEVFPEFAAAHSNLASVL-QQQGKLQEA 62
Query: 344 TEQLSWAGNEMASILREGDPVQIEP--PIAWAGFAAVQKTHHEVAAAFETEENELSKMEE 401
A ++I P A++ K +V A + +
Sbjct: 63 LMHYKEA-------------IRISPTFADAYSNMGNTLKEMQDVQGALQCYTRAIQINPA 109
Query: 402 CAGA--GESAFLDQASAVNVAKECLLAALKADPKAAHIWANLANAYYLTGDHRSSGKCLE 459
A A ++ + + A ALK P + NLA+ + D + ++
Sbjct: 110 FADAHSNLASIHKDSGNIPEAIASYRTALKLKPDFPDAYCNLAHCLQIVCDWTDYDERMK 169
Query: 460 KVL 462
K++
Sbjct: 170 KLV 172
|
| >1xnf_A Lipoprotein NLPI; TPR, tetratricopeptide, structural genomi unknown function; 1.98A {Escherichia coli} SCOP: a.118.8.1 Length = 275 | Back alignment and structure |
|---|
Score = 74.7 bits (184), Expect = 3e-15
Identities = 37/277 (13%), Positives = 75/277 (27%), Gaps = 47/277 (16%)
Query: 54 EEKVSSLKTGLVHVARKMPKNAHAHFLLGLMYQRLGQPLKAVSSYEKAEEILLRCEADIA 113
E ++ ++ L A + A + G++Y LG A + + +A I
Sbjct: 22 EVILARMEQILASRALTDDERAQLLYERGVLYDSLGLRALARNDFSQALAI--------- 72
Query: 114 RPELLSLVQIHHAQCLLPESSGDNSLDKELEPEELEEILSKLKESMQSDTRQAVVWNTLG 173
RP+ + ++ + G L + + ++ D G
Sbjct: 73 RPD---MPEVFN-------YLG-IYLTQA---GNFDAAYEAFDSVLELDPTYNYAHLNRG 118
Query: 174 LILLKSGRLQSSISVLSSLLAVDPNNCDCIGNLGIAYFQSGDMEQSAKCFQDLILKDQNH 233
+ L GR + + L + DPN+ L +A + + + Q D+
Sbjct: 119 IALYYGGRDKLAQDDLLAFYQDDPNDPFRSLWLYLAEQKLDEKQAKEVLKQHFEKSDKEQ 178
Query: 234 PAALINYAALLLCKYGSVLAGAGANTGEGACLDQASAVNVAKECLLAALKADPKAAHIWA 293
G + + + + K +
Sbjct: 179 WG----------------WNIVEFYLGN---ISEQTLMERLKADATDNTSLAEHLSETNF 219
Query: 294 NLANAYYLTGDHRSSGKCLEKAAKLEPNCMSTRYAVA 330
L Y GD S+ + A + V
Sbjct: 220 YLGKYYLSLGDLDSATALFKLAVANNVH-----NFVE 251
|
| >1xnf_A Lipoprotein NLPI; TPR, tetratricopeptide, structural genomi unknown function; 1.98A {Escherichia coli} SCOP: a.118.8.1 Length = 275 | Back alignment and structure |
|---|
Score = 57.3 bits (139), Expect = 2e-09
Identities = 39/298 (13%), Positives = 74/298 (24%), Gaps = 67/298 (22%)
Query: 169 WNTLGLILLKSGRLQSSIS----VLSSLLAVDPNNCDCIGNLGIAYFQSGDMEQSAKCFQ 224
L + L + + + ++ +L+S D + G+ Y G + F
Sbjct: 8 SEVLAVPLQPTLQQEVILARMEQILASRALTDDERAQLLYERGVLYDSLGLRALARNDFS 67
Query: 225 DLILKDQNHPAALINYAALLLCKYGSVLAGAGANTGEGACLDQASAVNVAKECLLAALKA 284
+ + P G L AG D A E + L+
Sbjct: 68 QALAIRPDMPEVFNY--------LGIYLTQAGN-------FDA------AYEAFDSVLEL 106
Query: 285 DPKAAHIWANLANAYYLTGDHRSSGKCLEKAAKLEPNCMSTRYAVAVSRIKDAERSQEPT 344
DP + N A Y G + + L + +PN + AE+ +
Sbjct: 107 DPTYNYAHLNRGIALYYGGRDKLAQDDLLAFYQDDPN-----DPFRSLWLYLAEQKLDEK 161
Query: 345 EQLSWAGNEMASILREGDPVQIEPPIAWAGFAAVQKTHHEVAAAFETEENELSKMEECAG 404
+ + + + W + + +E + ME
Sbjct: 162 Q-------AKEVLKQH---FEKSDKEQWG---------WNIVEFYLGNISEQTLMER--- 199
Query: 405 AGESAFLDQASAVNVAKECLLAALKADPKAAHIWANLANAYYLTGDHRSSGKCLEKVL 462
K + L Y GD S+ + +
Sbjct: 200 ---------------LKADATDNTSLAEHLSETNFYLGKYYLSLGDLDSATALFKLAV 242
|
| >1xnf_A Lipoprotein NLPI; TPR, tetratricopeptide, structural genomi unknown function; 1.98A {Escherichia coli} SCOP: a.118.8.1 Length = 275 | Back alignment and structure |
|---|
Score = 56.2 bits (136), Expect = 4e-09
Identities = 32/186 (17%), Positives = 66/186 (35%), Gaps = 23/186 (12%)
Query: 137 NSLDKELEPEELEEILSK-LKESMQSDTRQAVVWNTLGLILLKSGRLQSSISVLSSLLAV 195
L L+ E + + + L +D +A + G++ G + + S LA+
Sbjct: 13 VPLQPTLQQEVILARMEQILASRALTDDERAQLLYERGVLYDSLGLRALARNDFSQALAI 72
Query: 196 DPNNCDCIGNLGIAYFQSGDMEQSAKCFQDLILKDQNHPAALINYAALLLCKYGSVLAGA 255
P+ + LGI Q+G+ + + + F ++ D + A +N
Sbjct: 73 RPDMPEVFNYLGIYLTQAGNFDAAYEAFDSVLELDPTYNYAHLNR--------------- 117
Query: 256 GANTGEGACLDQASAVNVAKECLLAALKADPKAAHIWANLANAYYLTGDHRSSGKCLEKA 315
G L +A++ LLA + DP L A + ++ + L++
Sbjct: 118 ------GIALYYGGRDKLAQDDLLAFYQDDPNDPFRSLWLYLAEQKLDEKQAK-EVLKQH 170
Query: 316 AKLEPN 321
+
Sbjct: 171 FEKSDK 176
|
| >1xnf_A Lipoprotein NLPI; TPR, tetratricopeptide, structural genomi unknown function; 1.98A {Escherichia coli} SCOP: a.118.8.1 Length = 275 | Back alignment and structure |
|---|
Score = 52.3 bits (126), Expect = 8e-08
Identities = 27/178 (15%), Positives = 56/178 (31%), Gaps = 22/178 (12%)
Query: 72 PKNAHAHFLLGLMYQRLGQPLKAVSSYEKAEEILLRCEADIARPELLSLVQIHHAQCLLP 131
P +AH G+ G+ A + P L
Sbjct: 108 PTYNYAHLNRGIALYYGGRDKLAQDDLLAFYQD---------DPN--------DPFRSLW 150
Query: 132 ESSGDNSLDKELEPEELEEILSKLKESMQSDTRQAVVWNTLGLILLKSGRLQSSISVLSS 191
+ LD++ E L++ K + +V LG + + ++ + +
Sbjct: 151 LYLAEQKLDEKQAKEVLKQHFEKSDKEQWGW---NIVEFYLG-NISEQTLMERLKADATD 206
Query: 192 LLAVDPNNCDCIGNLGIAYFQSGDMEQSAKCFQDLILKDQNHPAALINYAALLLCKYG 249
++ + + LG Y GD++ + F+ + + ++ YA L L G
Sbjct: 207 NTSLAEHLSETNFYLGKYYLSLGDLDSATALFKLAVANNVHNFVEH-RYALLELSLLG 263
|
| >1xnf_A Lipoprotein NLPI; TPR, tetratricopeptide, structural genomi unknown function; 1.98A {Escherichia coli} SCOP: a.118.8.1 Length = 275 | Back alignment and structure |
|---|
Score = 44.2 bits (105), Expect = 5e-05
Identities = 19/153 (12%), Positives = 42/153 (27%), Gaps = 21/153 (13%)
Query: 72 PKNAHAHFLLGLMYQRLGQPLKAVSSYEKAEEILLRCEADIARPELLSLVQIHHAQCLLP 131
P + L L Q+L + +A ++ E + +
Sbjct: 142 PNDPFRSLWLYLAEQKLDE-KQAKEVLKQHFEKSDKEQWGWN------------------ 182
Query: 132 ESSGDNSLDKELEPEELEEILSKLKESMQSDTRQAVVWNTLGLILLKSGRLQSSISVLSS 191
+ L E +E + + ++ + LG L G L S+ ++
Sbjct: 183 --IVEFYLGNISEQTLMERLKADATDNTSLAEHLSETNFYLGKYYLSLGDLDSATALFKL 240
Query: 192 LLAVDPNNCDCIGNLGIAYFQSGDMEQSAKCFQ 224
+A + +N + G +
Sbjct: 241 AVANNVHNFVEHRYALLELSLLGQDQDDLAESD 273
|
| >2vsy_A XCC0866; transferase, glycosyl transferase, GT-B, OGT, protein O-GLCN; HET: NHE; 2.10A {Xanthomonas campestris PV} PDB: 2jlb_A* 2xgm_A* 2xgo_A* 2xgs_A* 2vsn_A* Length = 568 | Back alignment and structure |
|---|
Score = 74.9 bits (184), Expect = 1e-14
Identities = 26/186 (13%), Positives = 48/186 (25%), Gaps = 26/186 (13%)
Query: 179 SGRLQSSISVLSSLLAVDPNNCDCIGNLGIAYFQSGDMEQSAKCFQDLILKDQNHPAALI 238
+ + L + + P + L A GD Q + HP A+
Sbjct: 2 TADGPRELLQLRAAVRHRPQDFVAWLMLADAELGMGDTTAGEMAVQRGLALHPGHPEAVA 61
Query: 239 NYAALLLCKYGSVLAGAGANTGEGACLDQASAVNVAKECLLAALKADPKAAHIWANLANA 298
G A L A A P+ I L +A
Sbjct: 62 RL---------------------GRVRWTQQRHAEAAVLLQQASDAAPEHPGIALWLGHA 100
Query: 299 YYLTGDHRSSGKCLEKAAKLEPNCMSTRYAVAVSRIKDAERSQEPTEQLSWAGNEMASIL 358
G ++ +A +L P +++ + R L ++ + +
Sbjct: 101 LEDAGQAEAAAAAYTRAHQLLPE-----EPYITAQLLNWRRRLCDWRALDVLSAQVRAAV 155
Query: 359 REGDPV 364
+G
Sbjct: 156 AQGVGA 161
|
| >2vsy_A XCC0866; transferase, glycosyl transferase, GT-B, OGT, protein O-GLCN; HET: NHE; 2.10A {Xanthomonas campestris PV} PDB: 2jlb_A* 2xgm_A* 2xgo_A* 2xgs_A* 2vsn_A* Length = 568 | Back alignment and structure |
|---|
Score = 72.2 bits (177), Expect = 1e-13
Identities = 27/160 (16%), Positives = 47/160 (29%), Gaps = 21/160 (13%)
Query: 147 ELEEILSKLKESMQSDTRQAVVWNTLGLILLKSGRLQSSISVLSSLLAVDPNNCDCIGNL 206
+ L +L+ +++ + V W L L G + + LA+ P + + + L
Sbjct: 4 DGPRELLQLRAAVRHRPQDFVAWLMLADAELGMGDTTAGEMAVQRGLALHPGHPEAVARL 63
Query: 207 GIAYFQSGDMEQSAKCFQDLILKDQNHPAALINYAALLLCKYGSVLAGAGANTGEGACLD 266
G + ++A Q HP + L
Sbjct: 64 GRVRWTQQRHAEAAVLLQQASDAAPEHPGIALWLGHALE--------------------- 102
Query: 267 QASAVNVAKECLLAALKADPKAAHIWANLANAYYLTGDHR 306
A A A + P+ +I A L N D R
Sbjct: 103 DAGQAEAAAAAYTRAHQLLPEEPYITAQLLNWRRRLCDWR 142
|
| >2vsy_A XCC0866; transferase, glycosyl transferase, GT-B, OGT, protein O-GLCN; HET: NHE; 2.10A {Xanthomonas campestris PV} PDB: 2jlb_A* 2xgm_A* 2xgo_A* 2xgs_A* 2vsn_A* Length = 568 | Back alignment and structure |
|---|
Score = 66.8 bits (163), Expect = 6e-12
Identities = 19/177 (10%), Positives = 47/177 (26%), Gaps = 23/177 (12%)
Query: 69 RKMPKNAHAHFLLGLMYQRLGQPLKAVSSYEKAEEILLRCEADIARPELLSLVQIHHAQC 128
R P++ A +L +G + ++ + P H +
Sbjct: 17 RHRPQDFVAWLMLADAELGMGDTTAGEMAVQRGLAL---------HPG--------HPEA 59
Query: 129 LLPESSGDNSLDKELEPEELEEILSKLKESMQSDTRQAVVWNTLGLILLKSGRLQSSISV 188
+ + E L+++ + + LG L +G+ +++ +
Sbjct: 60 VA------RLGRVRWTQQRHAEAAVLLQQASDAAPEHPGIALWLGHALEDAGQAEAAAAA 113
Query: 189 LSSLLAVDPNNCDCIGNLGIAYFQSGDMEQSAKCFQDLILKDQNHPAALINYAALLL 245
+ + P L + D + A+ +A L
Sbjct: 114 YTRAHQLLPEEPYITAQLLNWRRRLCDWRALDVLSAQVRAAVAQGVGAVEPFAFLSE 170
|
| >2vsy_A XCC0866; transferase, glycosyl transferase, GT-B, OGT, protein O-GLCN; HET: NHE; 2.10A {Xanthomonas campestris PV} PDB: 2jlb_A* 2xgm_A* 2xgo_A* 2xgs_A* 2vsn_A* Length = 568 | Back alignment and structure |
|---|
Score = 52.9 bits (127), Expect = 1e-07
Identities = 29/181 (16%), Positives = 44/181 (24%), Gaps = 48/181 (26%)
Query: 274 AKECLLAALKADPKAAHIWANLANAYYLTGDHRSSGKCLEKAAKLEPNCMSTRYAVAVSR 333
L AA++ P+ W LA+A GD + +++ L P A
Sbjct: 8 ELLQLRAAVRHRPQDFVAWLMLADAELGMGDTTAGEMAVQRGLALHPGHPEA-VARLGRV 66
Query: 334 IKDAERSQEPTEQLSWAGNEMASILREGDPVQIEP--PIAWAGFAAVQKTHHEVAAAFET 391
+R E L A P P +
Sbjct: 67 RWTQQRHAEAAVLLQQA-------------SDAAPEHPGIALWLGHALE----------- 102
Query: 392 EENELSKMEECAGAGESAFLDQASAVNVAKECLLAALKADPKAAHIWANLANAYYLTGDH 451
+ + E A A + P+ +I A L N D
Sbjct: 103 ---DAGQAEA------------------AAAAYTRAHQLLPEEPYITAQLLNWRRRLCDW 141
Query: 452 R 452
R
Sbjct: 142 R 142
|
| >2vq2_A PILW, putative fimbrial biogenesis and twitching motility protein; secretin, TPR repeat, type IV pilus, bacterail virulence; 1.54A {Neisseria meningitidis} Length = 225 | Back alignment and structure |
|---|
Score = 70.4 bits (173), Expect = 5e-14
Identities = 26/178 (14%), Positives = 54/178 (30%), Gaps = 16/178 (8%)
Query: 160 QSDTRQAVVWNTLGLILLKSGRLQSSISVLSSLLAVDPNNCDCIGNLGIAYFQSGDMEQS 219
+ + + + L + ++ + + + + L DP N Y +++
Sbjct: 2 EKANQVSNIKTQLAMEYMRGQDYRQATASIEDALKSDPKNELAWLVRAEIYQYLKVNDKA 61
Query: 220 AKCFQDLILKDQNHPAALINYAALLLCKYG----------SVLAG------AGANTGEGA 263
+ F+ + + NY L + LA AN +G
Sbjct: 62 QESFRQALSIKPDSAEINNNYGWFLCGRLNRPAESMAYFDKALADPTYPTPYIANLNKGI 121
Query: 264 CLDQASAVNVAKECLLAALKADPKAAHIWANLANAYYLTGDHRSSGKCLEKAAKLEPN 321
C + +A+ L +L A P+ + LA L G + +K
Sbjct: 122 CSAKQGQFGLAEAYLKRSLAAQPQFPPAFKELARTKMLAGQLGDADYYFKKYQSRVEV 179
|
| >2vq2_A PILW, putative fimbrial biogenesis and twitching motility protein; secretin, TPR repeat, type IV pilus, bacterail virulence; 1.54A {Neisseria meningitidis} Length = 225 | Back alignment and structure |
|---|
Score = 62.3 bits (152), Expect = 3e-11
Identities = 33/180 (18%), Positives = 57/180 (31%), Gaps = 24/180 (13%)
Query: 72 PKNAHAHFLLGLMYQRLGQPLKAVSSYEKAEEILLRCEADIARPELLSLVQIHHAQCLLP 131
PKN A + +YQ L KA S+ +A I +P+ +I++
Sbjct: 39 PKNELAWLVRAEIYQYLKVNDKAQESFRQALSI---------KPDS---AEINN------ 80
Query: 132 ESSGDNSLDKEL-EPEELEEILSK-LKESMQSDTRQAVVWNTLGLILLKSGRLQSSISVL 189
+ G L L P E K L + + G+ K G+ + + L
Sbjct: 81 -NYG-WFLCGRLNRPAESMAYFDKALADPTYPT--PYIANLNKGICSAKQGQFGLAEAYL 136
Query: 190 SSLLAVDPNNCDCIGNLGIAYFQSGDMEQSAKCFQDLILKDQNHPAALINYAALLLCKYG 249
LA P L +G + + F+ + + A + + G
Sbjct: 137 KRSLAAQPQFPPAFKELARTKMLAGQLGDADYYFKKYQSRVEVLQADDLLLGWKIAKALG 196
|
| >2vq2_A PILW, putative fimbrial biogenesis and twitching motility protein; secretin, TPR repeat, type IV pilus, bacterail virulence; 1.54A {Neisseria meningitidis} Length = 225 | Back alignment and structure |
|---|
Score = 48.4 bits (116), Expect = 1e-06
Identities = 31/208 (14%), Positives = 50/208 (24%), Gaps = 41/208 (19%)
Query: 255 AGANTGEGACLDQASAVNVAKECLLAALKADPKAAHIWANLANAYYLTGDHRSSGKCLEK 314
+ T + A + ALK+DPK W A Y + + + +
Sbjct: 8 SNIKTQLAMEYMRGQDYRQATASIEDALKSDPKNELAWLVRAEIYQYLKVNDKAQESFRQ 67
Query: 315 AAKLEPNCMSTRYAVAVSRIKDAERSQEPTEQLSWAGNEMASILREGDPVQIEPPIAWAG 374
A ++P+ R E A DP P IA
Sbjct: 68 ALSIKPDSAEINNNYGWFLCGRLNRPAESMAYFDKALA---------DPTYPTPYIANLN 118
Query: 375 FAAVQKTHHEVAAAFETEENELSKMEECAGAGESAFLDQASAVNVAKECLLAALKADPKA 434
+ + A+ L +L A P+
Sbjct: 119 KGICSA--------------KQGQFGL------------------AEAYLKRSLAAQPQF 146
Query: 435 AHIWANLANAYYLTGDHRSSGKCLEKVL 462
+ LA L G + +K
Sbjct: 147 PPAFKELARTKMLAGQLGDADYYFKKYQ 174
|
| >2ho1_A Type 4 fimbrial biogenesis protein PILF; type IV pilus biogenesis, TPR, superhelix, protein binding; HET: MSE; 2.00A {Pseudomonas aeruginosa} PDB: 2fi7_A Length = 252 | Back alignment and structure |
|---|
Score = 69.6 bits (171), Expect = 1e-13
Identities = 25/172 (14%), Positives = 56/172 (32%), Gaps = 17/172 (9%)
Query: 166 AVVWNTLGLILLKSGRLQSSISVLSSLLAVDPNNCDCIGNLGIAYFQSGDMEQSAKCFQD 225
+ LGL L+ G + + L L +DP++ D L + + + + + + ++
Sbjct: 37 RDAYIQLGLGYLQRGNTEQAKVPLRKALEIDPSSADAHAALAVVFQTEMEPKLADEEYRK 96
Query: 226 LILKDQNHPAALINYAALLLCK----------YGSVLAG------AGANTGEGACLDQAS 269
+ D + L NY L + + G Q
Sbjct: 97 ALASDSRNARVLNNYGG-FLYEQKRYEEAYQRLLEASQDTLYPERSRVFENLGLVSLQMK 155
Query: 270 AVNVAKECLLAALKADPKAAHIWANLANAYYLTGDHRSSGKCLEKAAKLEPN 321
AKE +L+ + + +A+ Y ++ + + + A+
Sbjct: 156 KPAQAKEYFEKSLRLNRNQPSVALEMADLLYKEREYVPARQYYDLFAQGGGQ 207
|
| >2ho1_A Type 4 fimbrial biogenesis protein PILF; type IV pilus biogenesis, TPR, superhelix, protein binding; HET: MSE; 2.00A {Pseudomonas aeruginosa} PDB: 2fi7_A Length = 252 | Back alignment and structure |
|---|
Score = 63.4 bits (155), Expect = 2e-11
Identities = 25/174 (14%), Positives = 62/174 (35%), Gaps = 23/174 (13%)
Query: 72 PKNAHAHFLLGLMYQRLGQPLKAVSSYEKAEEILLRCEADIARPELLSLVQIHHAQCLLP 131
P +A AH L +++Q +P A Y KA ++ +
Sbjct: 68 PSSADAHAALAVVFQTEMEPKLADEEYRKALAS---------DSRN---ARVLN------ 109
Query: 132 ESSGDNSLDKELEPEELEEILSK-LKESMQSDTRQAVVWNTLGLILLKSGRLQSSISVLS 190
+ G L ++ EE + L + ++++ + ++ V+ LGL+ L+ + +
Sbjct: 110 -NYG-GFLYEQKRYEEAYQRLLEASQDTLYPE--RSRVFENLGLVSLQMKKPAQAKEYFE 165
Query: 191 SLLAVDPNNCDCIGNLGIAYFQSGDMEQSAKCFQDLILKDQNHPAALINYAALL 244
L ++ N + ++ + + + + + +L+ L
Sbjct: 166 KSLRLNRNQPSVALEMADLLYKEREYVPARQYYDLFAQGGGQNARSLLLGIRLA 219
|
| >2ho1_A Type 4 fimbrial biogenesis protein PILF; type IV pilus biogenesis, TPR, superhelix, protein binding; HET: MSE; 2.00A {Pseudomonas aeruginosa} PDB: 2fi7_A Length = 252 | Back alignment and structure |
|---|
Score = 61.1 bits (149), Expect = 1e-10
Identities = 43/252 (17%), Positives = 79/252 (31%), Gaps = 46/252 (18%)
Query: 72 PKNAHAHFLLGLMYQRLGQPLKAVSSYEKAEEILLRCEADIARPELLSLVQIHHAQCLLP 131
+ A+ LGL Y + G +A KA EI P H A ++
Sbjct: 34 DEARDAYIQLGLGYLQRGNTEQAKVPLRKALEI---------DPS---SADAHAALAVVF 81
Query: 132 ESSGDNSLDKELEPEELEEILSKLKESMQSDTRQAVVWNTLGLILLKSGRLQSSISVLSS 191
++ E + + ++++ SD+R A V N G L + R + + L
Sbjct: 82 QTEM-----------EPKLADEEYRKALASDSRNARVLNNYGGFLYEQKRYEEAYQRLLE 130
Query: 192 LLAV--DPNNCDCIGNLGIAYFQSGDMEQSAKCFQDLILKDQNHPAALINYAALLLCKYG 249
P NLG+ Q Q+ + F+ + ++N P+ + A LL
Sbjct: 131 ASQDTLYPERSRVFENLGLVSLQMKKPAQAKEYFEKSLRLNRNQPSVALEMADLLY---- 186
Query: 250 SVLAGAGANTGEGACLDQASAVNVAKECLLAALKADPKAAHIWANLANAYYLTGDHRSSG 309
E A++ + + A + D ++
Sbjct: 187 --------KERE---YVP------ARQYYDLFAQGGGQNARSLLLGIRLAKVFEDRDTAA 229
Query: 310 KCLEKAAKLEPN 321
+ +L P
Sbjct: 230 SYGLQLKRLYPG 241
|
| >2ho1_A Type 4 fimbrial biogenesis protein PILF; type IV pilus biogenesis, TPR, superhelix, protein binding; HET: MSE; 2.00A {Pseudomonas aeruginosa} PDB: 2fi7_A Length = 252 | Back alignment and structure |
|---|
Score = 46.9 bits (112), Expect = 5e-06
Identities = 18/165 (10%), Positives = 41/165 (24%), Gaps = 21/165 (12%)
Query: 72 PKNAHAHFLLGLMYQRLGQPLKAVSSYEKAEEILLRCEADIARPELLSLVQIHHAQCLLP 131
+NA G + +A +A + L + +R +L L
Sbjct: 102 SRNARVLNNYGGFLYEQKRYEEAYQRLLEASQDTLY--PERSRV-FENL-----GLVSL- 152
Query: 132 ESSGDNSLDKELEPEELEEILSKLKESMQSDTRQAVVWNTLGLILLKSGRLQSSISVLSS 191
+ ++ + ++S++ + Q V + +L K +
Sbjct: 153 ------------QMKKPAQAKEYFEKSLRLNRNQPSVALEMADLLYKEREYVPARQYYDL 200
Query: 192 LLAVDPNNCDCIGNLGIAYFQSGDMEQSAKCFQDLILKDQNHPAA 236
N + D + +A L
Sbjct: 201 FAQGGGQNARSLLLGIRLAKVFEDRDTAASYGLQLKRLYPGSLEY 245
|
| >2ho1_A Type 4 fimbrial biogenesis protein PILF; type IV pilus biogenesis, TPR, superhelix, protein binding; HET: MSE; 2.00A {Pseudomonas aeruginosa} PDB: 2fi7_A Length = 252 | Back alignment and structure |
|---|
Score = 41.9 bits (99), Expect = 2e-04
Identities = 25/149 (16%), Positives = 45/149 (30%), Gaps = 22/149 (14%)
Query: 169 WNTLGLILLKSGRLQSSISVLSSLLAVDPNNCDCIGNLGIAYFQSGDMEQSAKCFQDLIL 228
+ L+ G + L + D LG+ Y Q G+ EQ+ + +
Sbjct: 7 HHHHSSGLVPRGSHMGDQNPLKTD-KGRDEARDAYIQLGLGYLQRGNTEQAKVPLRKALE 65
Query: 229 KDQNHPAALINYAALLLCKYGSVLAGAGANTGEGACLDQASAVNVAKECLLAALKADPKA 288
D + A A + E A E AL +D +
Sbjct: 66 IDPSSADAHAALAVVF------------QTEME---PKL------ADEEYRKALASDSRN 104
Query: 289 AHIWANLANAYYLTGDHRSSGKCLEKAAK 317
A + N Y + + + L +A++
Sbjct: 105 ARVLNNYGGFLYEQKRYEEAYQRLLEASQ 133
|
| >1fch_A Peroxisomal targeting signal 1 receptor; protein-peptide complex, tetratricopeptide repeat, TPR, helical repeat, signaling protein; 2.20A {Homo sapiens} SCOP: a.118.8.1 PDB: 2j9q_A 3imz_B* 3r9a_B* 2c0m_A 2c0l_A Length = 368 | Back alignment and structure |
|---|
Score = 71.2 bits (175), Expect = 1e-13
Identities = 35/177 (19%), Positives = 68/177 (38%), Gaps = 8/177 (4%)
Query: 147 ELEEILSKLKESMQSDTRQAVVWNTLGLILLKSGRLQSSISVLSSLLAVDPNNCDCIGNL 206
+L + + ++Q D + W LG ++ + +IS L L + P+N + L
Sbjct: 79 DLPNAVLLFEAAVQQDPKHMEAWQYLGTTQAENEQELLAISALRRCLELKPDNQTALMAL 138
Query: 207 GIAYFQSGDMEQSAKCFQDLILKDQNHPAALINYAALLLCKYGSVLAGAGANTGEGACLD 266
+++ Q+ + +D + + + G+ AG G + L
Sbjct: 139 AVSFTNESLQRQACEILRDWLRYTPAYAHLVTPAEE------GAGGAGLGPSKRILGSLL 192
Query: 267 QASAVNVAKECLLAALKADPK--AAHIWANLANAYYLTGDHRSSGKCLEKAAKLEPN 321
S KE LAA++ DP + L + L+G++ + C A + PN
Sbjct: 193 SDSLFLEVKELFLAAVRLDPTSIDPDVQCGLGVLFNLSGEYDKAVDCFTAALSVRPN 249
|
| >1fch_A Peroxisomal targeting signal 1 receptor; protein-peptide complex, tetratricopeptide repeat, TPR, helical repeat, signaling protein; 2.20A {Homo sapiens} SCOP: a.118.8.1 PDB: 2j9q_A 3imz_B* 3r9a_B* 2c0m_A 2c0l_A Length = 368 | Back alignment and structure |
|---|
Score = 66.2 bits (162), Expect = 5e-12
Identities = 42/257 (16%), Positives = 74/257 (28%), Gaps = 42/257 (16%)
Query: 72 PKNAHAHFLLGLMYQRLGQPLKAVSSYEKAEEILLRCEADIARPELLSLVQIHHAQCLLP 131
P N A L + + +A LR A L++ + L
Sbjct: 129 PDNQTALMALAVSFTNESLQRQACEILRDW----LRYTPAYA--HLVTPAEEGAGGAGLG 182
Query: 132 ESSGDNSLDKELEPEELEEILSKLKE--SMQSDTRQAVVWNTLGLILLKSGRLQSSISVL 189
S L L E+ + + V LG++ SG ++
Sbjct: 183 PS--KRILGSLLSDSLFLEVKELFLAAVRLDPTSIDPDVQCGLGVLFNLSGEYDKAVDCF 240
Query: 190 SSLLAVDPNNCDCIGNLGIAYFQSGDMEQSAKCFQDLILKDQNHPAALINYAALLLCKYG 249
++ L+V PN+ LG E++ ++ + + + N
Sbjct: 241 TAALSVRPNDYLLWNKLGATLANGNQSEEAVAAYRRALELQPGYIRSRYN---------- 290
Query: 250 SVLAGAGANTGEGACLDQASAVNVAKECLLAALKADPKAA-----------HIWANLANA 298
L + N G +A E L AL K+ +IW+ L A
Sbjct: 291 --LGISCINLG---AHREA------VEHFLEALNMQRKSRGPRGEGGAMSENIWSTLRLA 339
Query: 299 YYLTGDHRSSGKCLEKA 315
+ G + G +
Sbjct: 340 LSMLGQSDAYGAADARD 356
|
| >1fch_A Peroxisomal targeting signal 1 receptor; protein-peptide complex, tetratricopeptide repeat, TPR, helical repeat, signaling protein; 2.20A {Homo sapiens} SCOP: a.118.8.1 PDB: 2j9q_A 3imz_B* 3r9a_B* 2c0m_A 2c0l_A Length = 368 | Back alignment and structure |
|---|
Score = 57.7 bits (140), Expect = 3e-09
Identities = 36/252 (14%), Positives = 66/252 (26%), Gaps = 68/252 (26%)
Query: 205 NLGIAYFQSGDMEQSAKCFQDLILKDQNHPAALINYAALLLCKYGSVLAGAGANTGEGAC 264
G+ Q GD+ + F+ + +D H A G
Sbjct: 69 EEGLRRLQEGDLPNAVLLFEAAVQQDPKHMEAWQYL---------------------GTT 107
Query: 265 LDQASAVNVAKECLLAALKADPKAAHIWANLANAYYLTGDHRSSGKCLEKAAKLEPNCMS 324
+ +A L L+ P LA ++ R + + L + P
Sbjct: 108 QAENEQELLAISALRRCLELKPDNQTALMALAVSFTNESLQRQACEILRDWLRYTPA--- 164
Query: 325 TRYAVAVSRIKDAERSQEPTEQLSWAGNEMASILREGDP----------VQIEPPIAWAG 374
YA V+ ++ L + + S+L + V+++P
Sbjct: 165 --YAHLVTPAEEGAGGA----GLGPSKRILGSLLSDSLFLEVKELFLAAVRLDPTSIDP- 217
Query: 375 FAAVQKTHHEVAAAFETEENELSKMEECAGAGESAFLDQASAVNVAKECLLAALKADPKA 434
+ F N + ++ A +C AAL P
Sbjct: 218 -----DVQCGLGVLF----NLSGEYDK------------------AVDCFTAALSVRPND 250
Query: 435 AHIWANLANAYY 446
+W L
Sbjct: 251 YLLWNKLGATLA 262
|
| >1fch_A Peroxisomal targeting signal 1 receptor; protein-peptide complex, tetratricopeptide repeat, TPR, helical repeat, signaling protein; 2.20A {Homo sapiens} SCOP: a.118.8.1 PDB: 2j9q_A 3imz_B* 3r9a_B* 2c0m_A 2c0l_A Length = 368 | Back alignment and structure |
|---|
Score = 50.0 bits (120), Expect = 9e-07
Identities = 42/275 (15%), Positives = 79/275 (28%), Gaps = 36/275 (13%)
Query: 73 KNAHAHFLLGLMYQRLGQPLKAVSSYEKAEEILLRCEADIARPELLSLVQIHHAQCLLPE 132
++ F GL + G AV +E A + P+ A L
Sbjct: 62 RDHPQPFEEGLRRLQEGDLPNAVLLFEAAVQQ---------DPKH------MEAWQYLGT 106
Query: 133 SSGDNSLDKELEPEELEEILSKLKESMQSDTRQAVVWNTLGLILLKSGRLQSSISVLSSL 192
+ +N E+ +S L+ ++ L + + + +L
Sbjct: 107 TQAEN--------EQELLAISALRRCLELKPDNQTALMALAVSFTNESLQRQACEILRDW 158
Query: 193 LAVDPNNCDCIGNLGIAYFQSGDMEQSAKCFQDLILKDQNHPAALINY--AALLLCKYGS 250
L P + +G +K +L D + A L
Sbjct: 159 LRYTPAYAHLVTPAEEGAGGAG--LGPSKRILGSLLSDSLFLEVKELFLAAVRLDPTS-- 214
Query: 251 VLAGAGANTGEGACLDQASAVNVAKECLLAALKADPKAAHIWANLANAYYLTGDHRSSGK 310
G G + + + A +C AAL P +W L +
Sbjct: 215 --IDPDVQCGLGVLFNLSGEYDKAVDCFTAALSVRPNDYLLWNKLGATLANGNQSEEAVA 272
Query: 311 CLEKAAKLEPNCMSTRYAVAVS-----RIKDAERS 340
+A +L+P + +RY + +S ++A
Sbjct: 273 AYRRALELQPGYIRSRYNLGISCINLGAHREAVEH 307
|
| >1fch_A Peroxisomal targeting signal 1 receptor; protein-peptide complex, tetratricopeptide repeat, TPR, helical repeat, signaling protein; 2.20A {Homo sapiens} SCOP: a.118.8.1 PDB: 2j9q_A 3imz_B* 3r9a_B* 2c0m_A 2c0l_A Length = 368 | Back alignment and structure |
|---|
Score = 43.5 bits (103), Expect = 9e-05
Identities = 36/204 (17%), Positives = 61/204 (29%), Gaps = 31/204 (15%)
Query: 261 EGACLDQASAVNVAKECLLAALKADPKAAHIWANLANAYYLTGDHRSSGKCLEKAAKLEP 320
EG Q + A AA++ DPK W L + L + +L+P
Sbjct: 70 EGLRRLQEGDLPNAVLLFEAAVQQDPKHMEAWQYLGTTQAENEQELLAISALRRCLELKP 129
Query: 321 NCMSTRYAVAVSRIKDAERSQEPTEQLSWAGNEMASILREGDPVQIEPPIAWAGFAAVQK 380
+ + A+AVS + ++ E L ++ P A A +
Sbjct: 130 DNQTALMALAVS-FTNESLQRQACEILRDW-------------LRYTPAYAHLVTPAEEG 175
Query: 381 THHEVAAAFETEENELSKMEECAGAGESAFLDQASAVNVAKECLLAALKADPK--AAHIW 438
+ L KE LAA++ DP +
Sbjct: 176 AGGAGLGPSKRILGSLLSDSLFLE---------------VKELFLAAVRLDPTSIDPDVQ 220
Query: 439 ANLANAYYLTGDHRSSGKCLEKVL 462
L + L+G++ + C L
Sbjct: 221 CGLGVLFNLSGEYDKAVDCFTAAL 244
|
| >3cv0_A Peroxisome targeting signal 1 receptor PEX5; TPR motifs, TPR protein, peroxin 5, PEX5, PTS1 binding domain, protein-peptide complex, receptor; 2.00A {Trypanosoma brucei} PDB: 3cvl_A 3cvn_A 3cvp_A 3cvq_A Length = 327 | Back alignment and structure |
|---|
Score = 70.0 bits (172), Expect = 2e-13
Identities = 38/256 (14%), Positives = 80/256 (31%), Gaps = 41/256 (16%)
Query: 72 PKNAHAHFLLGLMYQRLGQPLKAVSSYEKAEEILLRCEADIARPE----LLSLVQIHHAQ 127
P+ A LGL + A+ + A + P+ +L H +
Sbjct: 52 PEREEAWRSLGLTQAENEKDGLAIIALNHARML---------DPKDIAVHAALAVSHTNE 102
Query: 128 CLLPESSGDNSLDK--ELEPEELEEILSKLKESMQSDTRQAVVWNTLGLILLKSGRLQSS 185
+ SL +P + E++ S ++ + +
Sbjct: 103 HNANAA--LASLRAWLLSQP-QYEQLGSVNLQADVDIDDLN--VQSEDFFFAAPNEYREC 157
Query: 186 ISVLSSLLAVDPNNCDCIGNLGIAYFQSGDMEQSAKCFQDLILKDQNHPAALINYAALLL 245
++L + L ++PN+ +LG+ Y S + + +A + + + A L
Sbjct: 158 RTLLHAALEMNPNDAQLHASLGVLYNLSNNYDSAAANLRRAVELRPDDAQLWNKLGATL- 216
Query: 246 CKYGSVLAGAGANTGEGACLDQASAVNVAKECLLAALKADPKAAHIWANLANAYYLTGDH 305
AN + A + AL +P + N+A +Y +
Sbjct: 217 -----------ANGNR---PQE------ALDAYNRALDINPGYVRVMYNMAVSYSNMSQY 256
Query: 306 RSSGKCLEKAAKLEPN 321
+ K L +A ++
Sbjct: 257 DLAAKQLVRAIYMQVG 272
|
| >3cv0_A Peroxisome targeting signal 1 receptor PEX5; TPR motifs, TPR protein, peroxin 5, PEX5, PTS1 binding domain, protein-peptide complex, receptor; 2.00A {Trypanosoma brucei} PDB: 3cvl_A 3cvn_A 3cvp_A 3cvq_A Length = 327 | Back alignment and structure |
|---|
Score = 63.1 bits (154), Expect = 4e-11
Identities = 28/229 (12%), Positives = 67/229 (29%), Gaps = 31/229 (13%)
Query: 72 PKNAHAHFLLGLMYQRLGQPLKAVSSYEKAEEILLRCEADIARPELLSLVQIHHAQCLLP 131
PK+ H L + + A++S +P+ L ++ +
Sbjct: 86 PKDIAVHAALAVSHTNEHNANAALASLRAWLLS---------QPQYEQLGSVNLQADVDI 136
Query: 132 ESSGDNSLDKEL-EPEELEEILSKLKESMQSDTRQAVVWNTLGLILLKSGRLQSSISVLS 190
+ S D P E E + L +++ + A + +LG++ S S+ + L
Sbjct: 137 DDLNVQSEDFFFAAPNEYRECRTLLHAALEMNPNDAQLHASLGVLYNLSNNYDSAAANLR 196
Query: 191 SLLAVDPNNCDCIGNLGIAYFQSGDMEQSAKCFQDLILKDQNHPAALINYAALLLCKYGS 250
+ + P++ LG +++ + + + + + N
Sbjct: 197 RAVELRPDDAQLWNKLGATLANGNRPQEALDAYNRALDINPGYVRVMYN--------MAV 248
Query: 251 VLAGAGANTGEGACLDQASAVNVAKECLLAALKADPKAAHIWANLANAY 299
+ D A + L+ A+ +
Sbjct: 249 SYSNMS-------QYDL------AAKQLVRAIYMQVGGTTPTGEASREA 284
|
| >3cv0_A Peroxisome targeting signal 1 receptor PEX5; TPR motifs, TPR protein, peroxin 5, PEX5, PTS1 binding domain, protein-peptide complex, receptor; 2.00A {Trypanosoma brucei} PDB: 3cvl_A 3cvn_A 3cvp_A 3cvq_A Length = 327 | Back alignment and structure |
|---|
Score = 56.1 bits (136), Expect = 8e-09
Identities = 32/252 (12%), Positives = 63/252 (25%), Gaps = 70/252 (27%)
Query: 205 NLGIAYFQSGDMEQSAKCFQDLILKDQNHPAALINYAALLLCKYGSVLAGAGANTGEGAC 264
G++ + ++ ++A F+ + A + G A
Sbjct: 26 EEGLSMLKLANLAEAALAFEAVCQAAPEREEAWRSL--------GLTQAENE-------K 70
Query: 265 LDQASAVNVAKECLLAALKADPKAAHIWANLANAYYLTGDHRSSGKCLEKAAKLEPNCMS 324
A L A DPK + A LA ++ + ++ L +P
Sbjct: 71 DGLA------IIALNHARMLDPKDIAVHAALAVSHTNEHNANAALASLRAWLLSQPQ--- 121
Query: 325 TRYAVAVSRIKDAERSQEPTEQLSWAGNEMASILREGDP----------VQIEPPIAWAG 374
Y S A+ + +E + +++ P A
Sbjct: 122 --YEQLGSVNLQADVDIDDLNVQ----SEDFFFAAPNEYRECRTLLHAALEMNPNDAQL- 174
Query: 375 FAAVQKTHHEVAAAFETEENELSKMEECAGAGESAFLDQASAVNVAKECLLAALKADPKA 434
H + + N + + A L A++ P
Sbjct: 175 -------HASLGVLY----NLSNNYDS------------------AAANLRRAVELRPDD 205
Query: 435 AHIWANLANAYY 446
A +W L
Sbjct: 206 AQLWNKLGATLA 217
|
| >3cv0_A Peroxisome targeting signal 1 receptor PEX5; TPR motifs, TPR protein, peroxin 5, PEX5, PTS1 binding domain, protein-peptide complex, receptor; 2.00A {Trypanosoma brucei} PDB: 3cvl_A 3cvn_A 3cvp_A 3cvq_A Length = 327 | Back alignment and structure |
|---|
Score = 53.1 bits (128), Expect = 8e-08
Identities = 35/289 (12%), Positives = 72/289 (24%), Gaps = 64/289 (22%)
Query: 72 PKNAHAHFLLGLMYQRLGQPLKAVSSYEKAEEILLRCEADIARPELLSLVQIHHAQCLLP 131
GL +L +A ++E + PE A L
Sbjct: 18 YMYHENPMEEGLSMLKLANLAEAALAFEAVCQA---------APER------EEAWRSLG 62
Query: 132 ESSGDNSLDKELEPEELEEILSKLKESMQSDTRQAVVWNTLGLILLKSGRLQSSISVLSS 191
+ +N E+ + L + D + V L + ++++ L +
Sbjct: 63 LTQAEN--------EKDGLAIIALNHARMLDPKDIAVHAALAVSHTNEHNANAALASLRA 114
Query: 192 LLAVDPNNCD---------------CIGNLGIAYFQSGDMEQSAKCFQDLILKDQNHPAA 236
L P + + + + + + + N
Sbjct: 115 WLLSQPQYEQLGSVNLQADVDIDDLNVQSEDFFFAAPNEYRECRTLLHAALEMNPNDAQL 174
Query: 237 LINYAALLLCKYGSVLAGAGANTGEGACLDQASAVNVAKECLLAALKADPKAAHIWANLA 296
+ L + D A L A++ P A +W L
Sbjct: 175 HASLGVLY------------NLSNN---YDS------AAANLRRAVELRPDDAQLWNKLG 213
Query: 297 NAYYLTGDHRSSGKCLEKAAKLEPNCMSTRYAVAVS-----RIKDAERS 340
+ + +A + P + Y +AVS + A +
Sbjct: 214 ATLANGNRPQEALDAYNRALDINPGYVRVMYNMAVSYSNMSQYDLAAKQ 262
|
| >3cv0_A Peroxisome targeting signal 1 receptor PEX5; TPR motifs, TPR protein, peroxin 5, PEX5, PTS1 binding domain, protein-peptide complex, receptor; 2.00A {Trypanosoma brucei} PDB: 3cvl_A 3cvn_A 3cvp_A 3cvq_A Length = 327 | Back alignment and structure |
|---|
Score = 46.9 bits (112), Expect = 7e-06
Identities = 32/202 (15%), Positives = 64/202 (31%), Gaps = 29/202 (14%)
Query: 261 EGACLDQASAVNVAKECLLAALKADPKAAHIWANLANAYYLTGDHRSSGKCLEKAAKLEP 320
EG + + + + A A +A P+ W +L + L A L+P
Sbjct: 27 EGLSMLKLANLAEAALAFEAVCQAAPEREEAWRSLGLTQAENEKDGLAIIALNHARMLDP 86
Query: 321 NCMSTRYAVAVSRIKDAERSQEPTEQLSWAGNEMASILREGDPVQIEPPIAWAGFAAVQK 380
++ A+AVS + + L + +P
Sbjct: 87 KDIAVHAALAVSH-TNEHNANAALASLRAW-------------LLSQP------------ 120
Query: 381 THHEVAAAFETEENELSKMEECAGAGESAFLDQASAVNVAKECLLAALKADPKAAHIWAN 440
+ +++ E F + + L AAL+ +P A + A+
Sbjct: 121 ---QYEQLGSVNLQADVDIDDLNVQSEDFFFAAPNEYRECRTLLHAALEMNPNDAQLHAS 177
Query: 441 LANAYYLTGDHRSSGKCLEKVL 462
L Y L+ ++ S+ L + +
Sbjct: 178 LGVLYNLSNNYDSAAANLRRAV 199
|
| >2vgx_A Chaperone SYCD; alternative dimer assembly, tetratricopeptide repeat, type III secretion; HET: MLY; 1.95A {Yersinia enterocolitica} SCOP: k.38.1.1 PDB: 2vgx_B* 2vgy_A* Length = 148 | Back alignment and structure |
|---|
Score = 65.3 bits (159), Expect = 5e-13
Identities = 24/142 (16%), Positives = 41/142 (28%), Gaps = 21/142 (14%)
Query: 180 GRLQSSISVLSSLLAVDPNNCDCIGNLGIAYFQSGDMEQSAKCFQDLILKDQNHPAALIN 239
G L S ++ L + + + + +L +QSG E + FQ L + D +
Sbjct: 1 GPLGSGGGTIAMLNEISSDTLEQLYSLAFNQYQSGXYEDAHXVFQALCVLDHYDSRFFLG 60
Query: 240 YAALLLCKYGSVLAGAGANTGEGACLDQASAVNVAKECLLAALKADPKAAHIWANLANAY 299
GAC ++A D + A
Sbjct: 61 L---------------------GACRQAMGQYDLAIHSYSYGAVMDIXEPRFPFHAAECL 99
Query: 300 YLTGDHRSSGKCLEKAAKLEPN 321
G+ + L A +L N
Sbjct: 100 LQXGELAEAESGLFLAQELIAN 121
|
| >2vgx_A Chaperone SYCD; alternative dimer assembly, tetratricopeptide repeat, type III secretion; HET: MLY; 1.95A {Yersinia enterocolitica} SCOP: k.38.1.1 PDB: 2vgx_B* 2vgy_A* Length = 148 | Back alignment and structure |
|---|
Score = 51.8 bits (124), Expect = 3e-08
Identities = 17/147 (11%), Positives = 36/147 (24%), Gaps = 21/147 (14%)
Query: 155 LKESMQSDTRQAVVWNTLGLILLKSGRLQSSISVLSSLLAVDPNNCDCIGNLGIAYFQSG 214
+ + + +L +SG + + V +L +D + LG G
Sbjct: 10 IAMLNEISSDTLEQLYSLAFNQYQSGXYEDAHXVFQALCVLDHYDSRFFLGLGACRQAMG 69
Query: 215 DMEQSAKCFQDLILKDQNHPAALINYAALLLCKYGSVLAGAGANTGEGACLDQASAVNVA 274
+ + + + D P + CL Q + A
Sbjct: 70 QYDLAIHSYSYGAVMDIXEPRFPFHA---------------------AECLLQXGELAEA 108
Query: 275 KECLLAALKADPKAAHIWANLANAYYL 301
+ L A + +
Sbjct: 109 ESGLFLAQELIANXPEFXELSTRVSSM 135
|
| >2vgx_A Chaperone SYCD; alternative dimer assembly, tetratricopeptide repeat, type III secretion; HET: MLY; 1.95A {Yersinia enterocolitica} SCOP: k.38.1.1 PDB: 2vgx_B* 2vgy_A* Length = 148 | Back alignment and structure |
|---|
Score = 44.9 bits (106), Expect = 7e-06
Identities = 12/128 (9%), Positives = 27/128 (21%), Gaps = 21/128 (16%)
Query: 214 GDMEQSAKCFQDLILKDQNHPAALINYAALLLCKYGSVLAGAGANTGEGACLDQASAVNV 273
G + L + L + Q+
Sbjct: 1 GPLGSGGGTIAMLNEISSDTLEQLYSL---------------------AFNQYQSGXYED 39
Query: 274 AKECLLAALKADPKAAHIWANLANAYYLTGDHRSSGKCLEKAAKLEPNCMSTRYAVAVSR 333
A A D + + L G + + A ++ + A
Sbjct: 40 AHXVFQALCVLDHYDSRFFLGLGACRQAMGQYDLAIHSYSYGAVMDIXEPRFPFHAAECL 99
Query: 334 IKDAERSQ 341
++ E ++
Sbjct: 100 LQXGELAE 107
|
| >2vgx_A Chaperone SYCD; alternative dimer assembly, tetratricopeptide repeat, type III secretion; HET: MLY; 1.95A {Yersinia enterocolitica} SCOP: k.38.1.1 PDB: 2vgx_B* 2vgy_A* Length = 148 | Back alignment and structure |
|---|
Score = 43.4 bits (102), Expect = 2e-05
Identities = 12/98 (12%), Positives = 25/98 (25%)
Query: 148 LEEILSKLKESMQSDTRQAVVWNTLGLILLKSGRLQSSISVLSSLLAVDPNNCDCIGNLG 207
E+ + D + + LG G+ +I S +D +
Sbjct: 37 YEDAHXVFQALCVLDHYDSRFFLGLGACRQAMGQYDLAIHSYSYGAVMDIXEPRFPFHAA 96
Query: 208 IAYFQSGDMEQSAKCFQDLILKDQNHPAALINYAALLL 245
Q G++ ++ N P +
Sbjct: 97 ECLLQXGELAEAESGLFLAQELIANXPEFXELSTRVSS 134
|
| >3ugm_A TAL effector avrbs3/PTHA; TAL effector; 3.00A {Xanthomonas oryzae} Length = 1047 | Back alignment and structure |
|---|
Score = 67.4 bits (164), Expect = 5e-12
Identities = 47/413 (11%), Positives = 93/413 (22%), Gaps = 65/413 (15%)
Query: 72 PKNAHAHFLLGLMYQRLGQPLKAVSSYEKAEEILLRCEADIARPE----LLSLVQIHHAQ 127
P A Q L + + +A + P+ + S + A
Sbjct: 223 PAQVVAIASHDGGKQALETMQRLLPVLCQAHGL---------PPDQVVAIASNIGGKQAL 273
Query: 128 CLLPESSGDNSLDKELEP----------------EELEEILSKLKESMQSDTRQAVVWNT 171
+ L P E ++ +L L ++ Q V +
Sbjct: 274 ETVQRLLPVLCQAHGLTPDQVVAIASHGGGKQALETVQRLLPVLCQAHGLTPDQVVAIAS 333
Query: 172 LGLILLKSGRLQSSISVLSSLLAVDPNNCDCIGNLGIAYFQSGDMEQSAKCFQDLILKDQ 231
+Q + VL + P+ I + G +++
Sbjct: 334 HDGGKQALETVQRLLPVLCQAHGLTPDQVVAIASNGGGKQALETVQRLLPVLCQAHGLTP 393
Query: 232 NHPAALINYAALLLCKYGSVLAGAGANTGEGACLDQASAVNVAKECLLAALKADPKAAHI 291
+ A+ + V L A P
Sbjct: 394 DQVVAIASNGG----------------------KQALETVQRLLPVLCQAHGLTPDQVVA 431
Query: 292 WANLANAYYLTGDHRSSGKCLEKAAKLEPNCMSTRYAVAVSRIKDAERSQEPTEQLSWAG 351
A+ + L + L P VA++ +++ E +QL
Sbjct: 432 IASHDGGKQALETVQRLLPVLCQTHGLTPA-----QVVAIASHDGGKQALETVQQLLPV- 485
Query: 352 NEMASILREGDPVQIEPPIAWA--GFAAVQKTHHEVAAAFETEENELSKMEECAGAGESA 409
L + + + +A A + + + L+ + A A
Sbjct: 486 ------LCQAHGLTPDQVVAIASNIGGKQALATVQRLLPVLCQAHGLTPDQVVAIASNGG 539
Query: 410 FLDQASAVNVAKECLLAALKADPKAAHIWANLANAYYLTGDHRSSGKCLEKVL 462
V L A P A+ + L +
Sbjct: 540 GKQALETVQRLLPVLCQAHGLTPDQVVAIASNGGGKQALETVQRLLPVLCQAH 592
|
| >3ugm_A TAL effector avrbs3/PTHA; TAL effector; 3.00A {Xanthomonas oryzae} Length = 1047 | Back alignment and structure |
|---|
Score = 62.7 bits (152), Expect = 2e-10
Identities = 39/353 (11%), Positives = 79/353 (22%), Gaps = 36/353 (10%)
Query: 146 EELEEILSKLKESMQSDTRQAVVWNTLGLILLKSGRLQSSISVLSSLLAVDPNNCDCIGN 205
E ++ +L L ++ Q V + +Q + VL + P+ I +
Sbjct: 206 ETVQRLLPVLCQAHGLTPAQVVAIASHDGGKQALETMQRLLPVLCQAHGLPPDQVVAIAS 265
Query: 206 LGIAYFQSGDMEQSAKCFQDLILKDQNHPAALINYAALL--LCKYGSVLAG--------- 254
+++ + A+ ++ L +L
Sbjct: 266 NIGGKQALETVQRLLPVLCQAHGLTPDQVVAIASHGGGKQALETVQRLLPVLCQAHGLTP 325
Query: 255 --AGANTGEGACLDQASAVNVAKECLLAALKADPKAAHIWANLANAYYLTGDHRSSGKCL 312
A V L A P A+ + L
Sbjct: 326 DQVVAIASHDGGKQALETVQRLLPVLCQAHGLTPDQVVAIASNGGGKQALETVQRLLPVL 385
Query: 313 EKAAKLEPNCMSTRY----AVAVSRIKDAERSQEPTEQLS----WAGNEMASILREGDPV 364
+A L P+ + A+ ++ L+ A + + V
Sbjct: 386 CQAHGLTPDQVVAIASNGGKQALETVQRLLPVLCQAHGLTPDQVVAIASHDGGKQALETV 445
Query: 365 Q-----------IEPPIAWA----GFAAVQKTHHEVAAAFETEENELSKMEECAGAGESA 409
Q + P A + + + L+ + A A
Sbjct: 446 QRLLPVLCQTHGLTPAQVVAIASHDGGKQALETVQQLLPVLCQAHGLTPDQVVAIASNIG 505
Query: 410 FLDQASAVNVAKECLLAALKADPKAAHIWANLANAYYLTGDHRSSGKCLEKVL 462
+ V L A P A+ + L +
Sbjct: 506 GKQALATVQRLLPVLCQAHGLTPDQVVAIASNGGGKQALETVQRLLPVLCQAH 558
|
| >3ugm_A TAL effector avrbs3/PTHA; TAL effector; 3.00A {Xanthomonas oryzae} Length = 1047 | Back alignment and structure |
|---|
Score = 62.0 bits (150), Expect = 2e-10
Identities = 37/302 (12%), Positives = 67/302 (22%), Gaps = 34/302 (11%)
Query: 162 DTRQAVVWNTLGLILLKSGRLQSSISVLSSLLAVDPNNCDCIGNLGIAYFQSGDMEQSAK 221
Q V + +Q + VL + P I + M++
Sbjct: 188 TPAQVVAIASNNGGKQALETVQRLLPVLCQAHGLTPAQVVAIASHDGGKQALETMQRLLP 247
Query: 222 CFQDLILKDQNHPAALINYAALLLCKYGSVLAGAGANTGEGACLDQASAVNVAKECLLAA 281
+ A+ + V L A
Sbjct: 248 VLCQAHGLPPDQVVAIASN---------------------IGGKQALETVQRLLPVLCQA 286
Query: 282 LKADPKAAHIWANLANAYYLTGDHRSSGKCLEKAAKLEPNCMSTRYAVAVSRIKDAERSQ 341
P A+ + L +A L P+ VA++ +++
Sbjct: 287 HGLTPDQVVAIASHGGGKQALETVQRLLPVLCQAHGLTPD-----QVVAIASHDGGKQAL 341
Query: 342 EPTEQLSWAGNEMASILREGDPVQIEPPIAWAGFAAVQKTHHEVAAAFETEENELSKMEE 401
E ++L + + P Q+ A A ++ V +
Sbjct: 342 ETVQRLLPVLCQAHGL----TPDQVV---AIASNGGGKQALETVQRLLPVLCQAHGLTPD 394
Query: 402 CAGAGESAFLDQA-SAVNVAKECLLAALKADPKAAHIWANLANAYYLTGDHRSSGKCLEK 460
A S QA V L A P A+ + L +
Sbjct: 395 QVVAIASNGGKQALETVQRLLPVLCQAHGLTPDQVVAIASHDGGKQALETVQRLLPVLCQ 454
Query: 461 VL 462
Sbjct: 455 TH 456
|
| >3ugm_A TAL effector avrbs3/PTHA; TAL effector; 3.00A {Xanthomonas oryzae} Length = 1047 | Back alignment and structure |
|---|
Score = 62.0 bits (150), Expect = 3e-10
Identities = 31/263 (11%), Positives = 59/263 (22%), Gaps = 36/263 (13%)
Query: 72 PKNAHAHFLLGLMYQRLGQPLKAVSSYEKAEEILLRCEADIARPELLSLVQIHHAQCLLP 131
P A Q L + + +A + +
Sbjct: 460 PAQVVAIASHDGGKQALETVQQLLPVLCQAHGL-----------------TPDQVVAI-- 500
Query: 132 ESSGDNSLDKELEPEELEEILSKLKESMQSDTRQAVVWNTLGLILLKSGRLQSSISVLSS 191
+++ + ++ +L L ++ Q V + G +Q + VL
Sbjct: 501 ----ASNIGGKQALATVQRLLPVLCQAHGLTPDQVVAIASNGGGKQALETVQRLLPVLCQ 556
Query: 192 LLAVDPNNCDCIGNLGIAYFQSGDMEQSAKCFQDLILKDQNHPAALIN----YAAL---- 243
+ P+ I + G +++ Q A+ + AL
Sbjct: 557 AHGLTPDQVVAIASNGGGKQALETVQRLLPVLCQAHGLTQVQVVAIASNIGGKQALETVQ 616
Query: 244 -LLCKYGSVLAG----AGANTGEGACLDQASAVNVAKECLLAALKADPKAAHIWANLANA 298
LL A V L A P A+
Sbjct: 617 RLLPVLCQAHGLTPAQVVAIASHDGGKQALETVQRLLPVLCQAHGLTPDQVVAIASNGGG 676
Query: 299 YYLTGDHRSSGKCLEKAAKLEPN 321
+ L +A L
Sbjct: 677 KQALETVQRLLPVLCQAHGLTQE 699
|
| >3ugm_A TAL effector avrbs3/PTHA; TAL effector; 3.00A {Xanthomonas oryzae} Length = 1047 | Back alignment and structure |
|---|
Score = 59.7 bits (144), Expect = 1e-09
Identities = 50/401 (12%), Positives = 98/401 (24%), Gaps = 73/401 (18%)
Query: 72 PKNAHAHFLLGLMYQRLGQPLKAVSSYEKAEEILLRCEADIARPELLSLVQIHHAQCLLP 131
P A G Q L + + +A + +
Sbjct: 562 PDQVVAIASNGGGKQALETVQRLLPVLCQAHGL---------TQV--------QVVAIAS 604
Query: 132 ESSGDNSLDKELEPEELEEILSKLKESMQSDTRQAVVWNTLGLILLKSGRLQSSISVLSS 191
G +L E ++ +L L ++ Q V + +Q + VL
Sbjct: 605 NIGGKQAL------ETVQRLLPVLCQAHGLTPAQVVAIASHDGGKQALETVQRLLPVLCQ 658
Query: 192 LLAVDPNNCDCIGNLGIAYFQSGDMEQSAKCFQDLILKDQNHPAALINYAALLLCKYGSV 251
+ P+ I + G +++ Q A+ +
Sbjct: 659 AHGLTPDQVVAIASNGGGKQALETVQRLLPVLCQAHGLTQEQVVAIAS------------ 706
Query: 252 LAGAGANTGEGACLDQASAVNVAKECLLAALKADPKAAHIWANLANAYYLTGDHRSSGKC 311
V L A P A+ +
Sbjct: 707 ---------NNGGKQALETVQRLLPVLCQAHGLTPDQVVAIASNGGGKQALETVQRLLPV 757
Query: 312 LEKAAKLEPNCMSTRYAVAVSRIKDAERSQEPTEQLSWAGNEMASILREGDPVQIEPPIA 371
L +A L P VA++ +++ E ++L PV +
Sbjct: 758 LCQAHGLTPA-----QVVAIASNIGGKQALETVQRLL--------------PVLCQDHGL 798
Query: 372 WAGFAAVQKTHHEVAAAFETEENELSKMEECAGAGESAFLDQASAVNV------AKECLL 425
++ A ET + L DQ A+ A E +
Sbjct: 799 TLAQVVAIASNIGGKQALETVQRLL----PVLCQAHGLTQDQVVAIASNIGGKQALETVQ 854
Query: 426 AALKADPKAAHIWANLANAYYLTGDHRSSGKCLEKVLMVYC 466
L + + + A + + + ++++L V C
Sbjct: 855 RLLPVLCQDHGLTPDQVVAIASNIGGKQALETVQRLLPVLC 895
|
| >3ugm_A TAL effector avrbs3/PTHA; TAL effector; 3.00A {Xanthomonas oryzae} Length = 1047 | Back alignment and structure |
|---|
Score = 56.2 bits (135), Expect = 2e-08
Identities = 48/401 (11%), Positives = 108/401 (26%), Gaps = 58/401 (14%)
Query: 64 LVHVARKMPKNAHAHFLLGLMYQRLGQPLKAVSSYEKAEEILLRCEADIARPELLSLVQI 123
L P A Q L + + +A L + +A + S
Sbjct: 622 LCQAHGLTPAQVVAIASHDGGKQALETVQRLLPVLCQA--HGLTPDQVVA---IASNGGG 676
Query: 124 HHAQCLLPESSGDNSLDKELEPEELEEILSKLKESMQSDTRQAVVWNTLGLILLKSGRLQ 183
A E ++ +L L ++ Q V + +Q
Sbjct: 677 KQAL------------------ETVQRLLPVLCQAHGLTQEQVVAIASNNGGKQALETVQ 718
Query: 184 SSISVLSSLLAVDPNNCDCIGNLGIAYFQSGDMEQSAKCFQDLILKDQNHPAALINYAAL 243
+ VL + P+ I + G +++ A+ +
Sbjct: 719 RLLPVLCQAHGLTPDQVVAIASNGGGKQALETVQRLLPVLCQAHGLTPAQVVAIASNIGG 778
Query: 244 L-----LCKYGSVLAGA-GANTGEGACLDQASAVNVAKECLLAALKADPKAAHIWANLAN 297
+ + VL G + + A E + L +A + +
Sbjct: 779 KQALETVQRLLPVLCQDHGLTLAQVVAIASNIGGKQALETVQRLLPVLCQAHGLTQDQVV 838
Query: 298 AYYLTGDHRSSGKCLEKAAKLEPNCM--STRYAVAVSRIKDAERSQEPTEQLSWAGNEMA 355
A + + + +++ + + VA++ +++ E ++L
Sbjct: 839 AIASNIGGKQALETVQRLLPVLCQDHGLTPDQVVAIASNIGGKQALETVQRL-------L 891
Query: 356 SILREGDPVQIEPPIAWAGFAAVQK-THHEVAAAFETEENELSKMEECAGAGESAFLDQA 414
+L + + ++ +A A Q + +++ L+ DQ
Sbjct: 892 PVLCQDHGLTLDQVVAIASNGGKQALETVQRLLPVLCQDHGLT-------------PDQV 938
Query: 415 SAVN------VAKECLLAALKADPKAAHIWANLANAYYLTG 449
A+ A E + L + + N A G
Sbjct: 939 VAIASNSGGKQALETVQRLLPVLCQDHGLTPNQVVAIASNG 979
|
| >2xcb_A PCRH, regulatory protein PCRH; protein transport, bacterial toxin, type III secretion, protein binding; 1.85A {Pseudomonas aeruginosa} PDB: 2xcc_A Length = 142 | Back alignment and structure |
|---|
Score = 62.1 bits (151), Expect = 6e-12
Identities = 20/130 (15%), Positives = 34/130 (26%), Gaps = 21/130 (16%)
Query: 192 LLAVDPNNCDCIGNLGIAYFQSGDMEQSAKCFQDLILKDQNHPAALINYAALLLCKYGSV 251
L + + + + LG +Q+G + + K FQ L + D +
Sbjct: 10 LRGLSEDTLEQLYALGFNQYQAGKWDDAQKIFQALCMLDHYDARYFLGL----------- 58
Query: 252 LAGAGANTGEGACLDQASAVNVAKECLLAALKADPKAAHIWANLANAYYLTGDHRSSGKC 311
GAC A + D + A + GD +
Sbjct: 59 ----------GACRQSLGLYEQALQSYSYGALMDINEPRFPFHAAECHLQLGDLDGAESG 108
Query: 312 LEKAAKLEPN 321
A L
Sbjct: 109 FYSARALAAA 118
|
| >2xcb_A PCRH, regulatory protein PCRH; protein transport, bacterial toxin, type III secretion, protein binding; 1.85A {Pseudomonas aeruginosa} PDB: 2xcc_A Length = 142 | Back alignment and structure |
|---|
Score = 51.3 bits (123), Expect = 3e-08
Identities = 22/147 (14%), Positives = 39/147 (26%), Gaps = 21/147 (14%)
Query: 155 LKESMQSDTRQAVVWNTLGLILLKSGRLQSSISVLSSLLAVDPNNCDCIGNLGIAYFQSG 214
L LG ++G+ + + +L +D + LG G
Sbjct: 7 LAMLRGLSEDTLEQLYALGFNQYQAGKWDDAQKIFQALCMLDHYDARYFLGLGACRQSLG 66
Query: 215 DMEQSAKCFQDLILKDQNHPAALINYAALLLCKYGSVLAGAGANTGEGACLDQASAVNVA 274
EQ+ + + L D N P + C Q ++ A
Sbjct: 67 LYEQALQSYSYGALMDINEPRFPFH---------------------AAECHLQLGDLDGA 105
Query: 275 KECLLAALKADPKAAHIWANLANAYYL 301
+ +A A A A +
Sbjct: 106 ESGFYSARALAAAQPAHEALAARAGAM 132
|
| >2xcb_A PCRH, regulatory protein PCRH; protein transport, bacterial toxin, type III secretion, protein binding; 1.85A {Pseudomonas aeruginosa} PDB: 2xcc_A Length = 142 | Back alignment and structure |
|---|
Score = 46.7 bits (111), Expect = 1e-06
Identities = 17/102 (16%), Positives = 32/102 (31%), Gaps = 2/102 (1%)
Query: 146 EELEEILSKLKESMQSDTRQAVVWNTLGLILLKSGRLQSSISVLSSLLAVDPNNCDCIGN 205
+ ++ + D A + LG G + ++ S +D N +
Sbjct: 32 GKWDDAQKIFQALCMLDHYDARYFLGLGACRQSLGLYEQALQSYSYGALMDINEPRFPFH 91
Query: 206 LGIAYFQSGDMEQSAKCFQDLILKDQNHP--AALINYAALLL 245
+ Q GD++ + F P AL A +L
Sbjct: 92 AAECHLQLGDLDGAESGFYSARALAAAQPAHEALAARAGAML 133
|
| >2pl2_A Hypothetical conserved protein TTC0263; TPR, protein binding; 2.50A {Thermus thermophilus} Length = 217 | Back alignment and structure |
|---|
Score = 63.7 bits (156), Expect = 7e-12
Identities = 28/163 (17%), Positives = 59/163 (36%), Gaps = 13/163 (7%)
Query: 159 MQSDTRQAVVWNTLGLILLKSGRLQSSISVLSSLLAVDPNNCDCIGNLGIAYFQSGDMEQ 218
MQ+ Q LG+ L GR +++++ L +P + + + L + G +
Sbjct: 1 MQTAE-QN--PLRLGVQLYALGRYDAALTLFERALKENPQDPEALYWLARTQLKLGLVNP 57
Query: 219 SAKCFQDLILKDQNHPAALINYAALLLCKYGSVLAGAGANTGEGACLDQASAVNVAKECL 278
+ + + L+ + + + + + G L+Q A L
Sbjct: 58 ALENGKTLVARTPRYLGGYMVLSEAYV-ALYRQAEDRERGKGY---LEQ------ALSVL 107
Query: 279 LAALKADPKAAHIWANLANAYYLTGDHRSSGKCLEKAAKLEPN 321
A + +P+ A + Y L G+ + L++A LE
Sbjct: 108 KDAERVNPRYAPLHLQRGLVYALLGERDKAEASLKQALALEDT 150
|
| >2pl2_A Hypothetical conserved protein TTC0263; TPR, protein binding; 2.50A {Thermus thermophilus} Length = 217 | Back alignment and structure |
|---|
Score = 58.3 bits (142), Expect = 5e-10
Identities = 41/263 (15%), Positives = 75/263 (28%), Gaps = 58/263 (22%)
Query: 71 MPKNAHAHFLLGLMYQRLGQPLKAVSSYEKAEEILLRCEADIARPELLSLVQIHHAQCLL 130
M LG+ LG+ A++ +E+A + P+ A L
Sbjct: 1 MQTAEQNPLRLGVQLYALGRYDAALTLFERALKE---------NPQD------PEALYWL 45
Query: 131 PESSGDNSLDKELEPEELEEILSKLKESMQSDTRQAVVWNTLGLILLK-----------S 179
+ +L + L K + R + L +
Sbjct: 46 ----A-RTQ-LKLG--LVNPALENGKTLVARTPRYLGGYMVLSEAYVALYRQAEDRERGK 97
Query: 180 GRLQSSISVLSSLLAVDPNNCDCIGNLGIAYFQSGDMEQSAKCFQDLI-LKDQNHPAALI 238
G L+ ++SVL V+P G+ Y G+ +++ + + L+D P
Sbjct: 98 GYLEQALSVLKDAERVNPRYAPLHLQRGLVYALLGERDKAEASLKQALALED--TPEIRS 155
Query: 239 NYAALLLCKYGSVLAGAGANTGEGACLDQASAVNVAKECLLAALKADPKAAHIWANLANA 298
+ G LD+A AL+ PK + A+A
Sbjct: 156 AL--------AELYLSMG-------RLDEA------LAQYAKALEQAPKDLDLRVRYASA 194
Query: 299 YYLTGDHRSSGKCLEKAAKLEPN 321
L G + + +
Sbjct: 195 LLLKGKAEEAARAAALEHHHHHH 217
|
| >3uq3_A Heat shock protein STI1; HSP90, peptide binding, chaperone; 2.60A {Saccharomyces cerevisiae} Length = 258 | Back alignment and structure |
|---|
Score = 63.3 bits (155), Expect = 2e-11
Identities = 41/285 (14%), Positives = 83/285 (29%), Gaps = 54/285 (18%)
Query: 72 PKNAHAHFLLGLMYQRLGQPLKAVSSYEKAEEILLRCEADIARPELLSLVQIH---HAQC 128
A G + + Q +A+ Y KA E+ DI + + +
Sbjct: 2 GSMADKEKAEGNKFYKARQFDEAIEHYNKAWEL----HKDITYLNNRAAAEYEKGEYETA 57
Query: 129 LLPESSGDNSLDK--ELEPE----------------ELEEILSKLKESMQSDTRQAVVWN 170
+ ++L+ E E L LK++++ +
Sbjct: 58 I-------STLNDAVEQGREMRADYKVISKSFARIGNAYHKLGDLKKTIEYYQKSLTEHR 110
Query: 171 TLGLILLKSGRLQSSISVLSSLLAVDPNNCDCIGNLGIAYFQSGDMEQSAKCFQDLILKD 230
T IL K + + + V+P + G YF D + K + ++I +
Sbjct: 111 T-ADILTKLRNAEKELKKAEAEAYVNPEKAEEARLEGKEYFTKSDWPNAVKAYTEMIKRA 169
Query: 231 QNHPAALINYAALLLCKYGSVLAGAGANTGEGACLDQASAVNVAKECLLAALKADPKAAH 290
N A L + + A A++ DP
Sbjct: 170 PEDARGYSN---------------------RAAALAKLMSFPEAIADCNKAIEKDPNFVR 208
Query: 291 IWANLANAYYLTGDHRSSGKCLEKAAKLEPNCMSTRYAVAVSRIK 335
+ A A ++ S+ + L+ A + + A + ++
Sbjct: 209 AYIRKATAQIAVKEYASALETLDAARTKDAEVNNGSSAREIDQLY 253
|
| >3uq3_A Heat shock protein STI1; HSP90, peptide binding, chaperone; 2.60A {Saccharomyces cerevisiae} Length = 258 | Back alignment and structure |
|---|
Score = 46.0 bits (110), Expect = 1e-05
Identities = 30/267 (11%), Positives = 73/267 (27%), Gaps = 69/267 (25%)
Query: 197 PNNCDCIGNLGIAYFQSGDMEQSAKCFQDLILKDQNHPAALINYAALLLCKYGSVLAGAG 256
+ D G ++++ +++ + + ++ L N AA
Sbjct: 2 GSMADKEKAEGNKFYKARQFDEAIEHYNKAWELHKDI-TYLNNRAAAEY----------- 49
Query: 257 ANTGEGACLDQASAVNVAKECLLAALKADPKAAHIWANLANAYYLTGDHRSSGKCLEKAA 316
GE + A L A++ + + ++ ++ G+ L+K
Sbjct: 50 -EKGE---YET------AISTLNDAVEQGREMRADYKVISKSFARIGNAYHKLGDLKKTI 99
Query: 317 KLEPNCMST-RYAVAVSRIKDAERSQEPTEQLSWAGNEMASILREGDPVQIEPPIAWAGF 375
+ ++ R A ++++++AE+ + E + P A
Sbjct: 100 EYYQKSLTEHRTADILTKLRNAEKELKKAEAE----------------AYVNPEKAEE-- 141
Query: 376 AAVQKTHHEVAAAFETEENELSKMEECAGAGESAFLDQASAVNVAKECLLAALKADPKAA 435
+ S A + +K P+ A
Sbjct: 142 ------ARLEGKEY----FTKSDWPN------------------AVKAYTEMIKRAPEDA 173
Query: 436 HIWANLANAYYLTGDHRSSGKCLEKVL 462
++N A A + K +
Sbjct: 174 RGYSNRAAALAKLMSFPEAIADCNKAI 200
|
| >3uq3_A Heat shock protein STI1; HSP90, peptide binding, chaperone; 2.60A {Saccharomyces cerevisiae} Length = 258 | Back alignment and structure |
|---|
Score = 44.9 bits (107), Expect = 2e-05
Identities = 36/309 (11%), Positives = 71/309 (22%), Gaps = 89/309 (28%)
Query: 165 QAVVWNTLGLILLKSGRLQSSISVLSSLLAVDPNNCDCIGNLGIAYFQSGDMEQSAKCFQ 224
A G K+ + +I + + + + N A ++ G+ E +
Sbjct: 4 MADKEKAEGNKFYKARQFDEAIEHYNKAWELHKDI-TYLNNRAAAEYEKGEYETAISTLN 62
Query: 225 DLILKDQNHPAALINYAALLLCKYGSVLAGAGANTGEGACLDQASAVNVAKECLLAALKA 284
D + + + A + A G L ++
Sbjct: 63 DAVEQGREMRADYKVISKSF------------ARIGN---------AYHKLGDLKKTIEY 101
Query: 285 DPKAAHIWANLANAYYLTGDHRSSGKCLEKAAKLEPNCMSTRYAVAVSRIKDAERSQEPT 344
K+ A+ + EK +K AE
Sbjct: 102 YQKSL-TEHRTADILTKLRN-------AEKE------------------LKKAEAEAYVN 135
Query: 345 EQLSWAGNEMASILRE-GDP----------VQIEPPIAWAGFAAVQKTHHEVAAAFETEE 393
+ + D ++ P A + AAA
Sbjct: 136 PEKAEEARLEGKEYFTKSDWPNAVKAYTEMIKRAPEDARG--------YSNRAAAL---- 183
Query: 394 NELSKMEECAGAGESAFLDQASAVNVAKECLLAALKADPKAAHIWANLANAYYLTGDHRS 453
+L E A A++ DP + A A ++ S
Sbjct: 184 AKLMSFPE------------------AIADCNKAIEKDPNFVRAYIRKATAQIAVKEYAS 225
Query: 454 SGKCLEKVL 462
+ + L+
Sbjct: 226 ALETLDAAR 234
|
| >4eqf_A PEX5-related protein; accessory protein, tetratricopeptide repeat, TPR; 3.00A {Mus musculus} Length = 365 | Back alignment and structure |
|---|
Score = 64.3 bits (157), Expect = 2e-11
Identities = 56/384 (14%), Positives = 101/384 (26%), Gaps = 96/384 (25%)
Query: 93 KAVSSYEKAEEILLRCEAD---IARPELLSLVQIHHAQCLLPESSGDNSLDKELEPEELE 149
+A ++ E E + +A+ +AR +S Q Q +
Sbjct: 7 RAKAAVESDTEFWDKMQAEWEEMARRNWISENQEAQNQ------------------VTVS 48
Query: 150 EILSKLKESMQSDTRQAVVWNTLGLILLKSGRLQSSISVLSSLLAVDPNNCDCIGNLGIA 209
++ + GL LK G L +I + + + DP + + LGI
Sbjct: 49 ASEKGYYFHTENPFKDWPGAFEEGLKRLKEGDLPVTILFMEAAILQDPGDAEAWQFLGIT 108
Query: 210 YFQSGDMEQSAKCFQDLILKDQNHPAALINYAALLLCKYGSVLAGAGANTGEGACLDQAS 269
++ + + + Q + N+ AL+ A NT
Sbjct: 109 QAENENEQAAIVALQRCLELQPNNLKALMALAVSY------------TNTSH---QQD-- 151
Query: 270 AVNVAKECLLAALKADPKAAHIWANLANAYYLTGDHRSSGKCLEKAAKLEPNCMSTRYAV 329
A E L +K +PK ++ N + LT S ++ Y
Sbjct: 152 ----ACEALKNWIKQNPKYKYLVKNKKGSPGLTRRMSKSPVDSSVLEGVKEL-----YLE 202
Query: 330 AVSRIKDAERSQEPTEQLSWAGNEMASILRE-GDP----------VQIEPPIAWAGFAAV 378
A Q + + G+ + + P
Sbjct: 203 AA--------HQNGDMIDPDLQTGLGVLFHLSGEFNRAIDAFNAALTVRPEDYSL----- 249
Query: 379 QKTHHEVAAAFETEENELSKMEECAGAGESAFLDQASAVNVAKECLLAALKADPKAAHIW 438
+ + A + EE A E AL+ P
Sbjct: 250 ---WNRLGATL----ANGDRSEE------------------AVEAYTRALEIQPGFIRSR 284
Query: 439 ANLANAYYLTGDHRSSGKCLEKVL 462
NL + G +R + L
Sbjct: 285 YNLGISCINLGAYREAVSNFLTAL 308
|
| >4eqf_A PEX5-related protein; accessory protein, tetratricopeptide repeat, TPR; 3.00A {Mus musculus} Length = 365 | Back alignment and structure |
|---|
Score = 62.0 bits (151), Expect = 1e-10
Identities = 38/262 (14%), Positives = 75/262 (28%), Gaps = 56/262 (21%)
Query: 72 PKNAHAHFLLGLMYQRLGQPLKAVSSYEKAEEILLRCEADIARPELLSLVQIHHAQCLLP 131
P +A A LG+ A+ + ++ E+ +P + + L+
Sbjct: 96 PGDAEAWQFLGITQAENENEQAAIVALQRCLEL---------QPN--------NLKALM- 137
Query: 132 ESSGDNSLDKELEPEELEEILSKLKESMQSDTRQAVVWNTLGLILLKSGRLQSSISVLSS 191
+ S ++ LK ++ + + + + R+ S S
Sbjct: 138 -ALA-VSYTNT---SHQQDACEALKNWIKQNPKYKYLVKNKKGSPGLTRRMSKSPVDSSV 192
Query: 192 LLAV----------DPNNCDCIG--NLGIAYFQSGDMEQSAKCFQDLILKDQNHPAALIN 239
L V + + D LG+ + SG+ ++ F + +
Sbjct: 193 LEGVKELYLEAAHQNGDMIDPDLQTGLGVLFHLSGEFNRAIDAFNAALTVRPEDYSLWNR 252
Query: 240 YAALLLCKYGSVLAGAGANTGEGACLDQASAVNVAKECLLAALKADPKAAHIWANLANAY 299
A L AN ++ A E AL+ P NL +
Sbjct: 253 LGATL------------ANGDR---SEE------AVEAYTRALEIQPGFIRSRYNLGISC 291
Query: 300 YLTGDHRSSGKCLEKAAKLEPN 321
G +R + A L+
Sbjct: 292 INLGAYREAVSNFLTALSLQRK 313
|
| >4eqf_A PEX5-related protein; accessory protein, tetratricopeptide repeat, TPR; 3.00A {Mus musculus} Length = 365 | Back alignment and structure |
|---|
Score = 61.6 bits (150), Expect = 2e-10
Identities = 34/231 (14%), Positives = 62/231 (26%), Gaps = 36/231 (15%)
Query: 72 PKNAHAHFLLGLMYQRLGQPLKAVSSYEKAEEILLRCEADIARPELLSLVQIHHAQCLLP 131
P N A L + Y A + + + P+ + + P
Sbjct: 130 PNNLKALMALAVSYTNTSHQQDACEALKNWIKQ---------NPKY---KYLVKNKKGSP 177
Query: 132 ESSGDNSLDKELEPEELEEILSKLKE--SMQSDTRQAVVWNTLGLILLKSGRLQSSISVL 189
+ S ++ LE + E D + LG++ SG +I
Sbjct: 178 GLTRRMS-KSPVDSSVLEGVKELYLEAAHQNGDMIDPDLQTGLGVLFHLSGEFNRAIDAF 236
Query: 190 SSLLAVDPNNCDCIGNLGIAYFQSGDMEQSAKCFQDLILKDQNHPAALINYAALLLCKYG 249
++ L V P + LG E++ + + + + N
Sbjct: 237 NAALTVRPEDYSLWNRLGATLANGDRSEEAVEAYTRALEIQPGFIRSRYN---------- 286
Query: 250 SVLAGAGANTGEGACLDQASAVNVAKECLLAALKADPKAAHIWANLANAYY 300
L + N G + A L AL K+ + A
Sbjct: 287 --LGISCINLG---AYRE------AVSNFLTALSLQRKSRNQQQVPHPAIS 326
|
| >4eqf_A PEX5-related protein; accessory protein, tetratricopeptide repeat, TPR; 3.00A {Mus musculus} Length = 365 | Back alignment and structure |
|---|
Score = 60.5 bits (147), Expect = 3e-10
Identities = 39/274 (14%), Positives = 79/274 (28%), Gaps = 37/274 (13%)
Query: 72 PKNAHAHFLLGLMYQRLGQPLKAVSSYEKAEEILLRCEADIARPELLSLVQIHHAQCLLP 131
K+ F GL + G + E A P A L
Sbjct: 62 FKDWPGAFEEGLKRLKEGDLPVTILFMEAAILQ---------DPGD------AEAWQFLG 106
Query: 132 ESSGDNSLDKELEPEELEEILSKLKESMQSDTRQAVVWNTLGLILLKSGRLQSSISVLSS 191
+ +N E + + L+ ++ L + + Q + L +
Sbjct: 107 ITQAEN--------ENEQAAIVALQRCLELQPNNLKALMALAVSYTNTSHQQDACEALKN 158
Query: 192 LLAVDPNNCDCIGNLGIAYFQSGDMEQSAKCFQDLILKDQNHPAALINYAALLLCKYGSV 251
+ +P + N + + M +S L + + A
Sbjct: 159 WIKQNPKYKYLVKNKKGSPGLTRRMSKSPVDSSVLEGVKELYLEAAHQNGD--------- 209
Query: 252 LAGAGANTGEGACLDQASAVNVAKECLLAALKADPKAAHIWANLANAYYLTGDHRSSGKC 311
+ TG G + N A + AAL P+ +W L + +
Sbjct: 210 MIDPDLQTGLGVLFHLSGEFNRAIDAFNAALTVRPEDYSLWNRLGATLANGDRSEEAVEA 269
Query: 312 LEKAAKLEPNCMSTRYAVAVS-----RIKDAERS 340
+A +++P + +RY + +S ++A +
Sbjct: 270 YTRALEIQPGFIRSRYNLGISCINLGAYREAVSN 303
|
| >4eqf_A PEX5-related protein; accessory protein, tetratricopeptide repeat, TPR; 3.00A {Mus musculus} Length = 365 | Back alignment and structure |
|---|
Score = 60.1 bits (146), Expect = 5e-10
Identities = 38/314 (12%), Positives = 73/314 (23%), Gaps = 58/314 (18%)
Query: 135 GDNSLDKELE-PEELEEILSKLKESMQSDTRQAVVWNTLGLILLKSGRLQSSISVLSSLL 193
G ++ E E K++ + R+ W + + +S
Sbjct: 1 GAMEFERAKAAVESDTEFWDKMQAEWEEMARRN--WISENQEAQNQVTVSASEKGYYFHT 58
Query: 194 AVDPNNCDCIGNLGIAYFQSGDMEQSAKCFQDLILKDQNHPAALINYAALLLCKYGSVLA 253
+ G+ + GD+ + + IL+D A G A
Sbjct: 59 ENPFKDWPGAFEEGLKRLKEGDLPVTILFMEAAILQDPGDAEAWQFL--------GITQA 110
Query: 254 GAGANTGEGACLDQASAVNVAKECLLAALKADPKAAHIWANLANAYYLTGDHRSSGKCLE 313
A L L+ P LA +Y T + + + L+
Sbjct: 111 ENEN-------EQAA------IVALQRCLELQPNNLKALMALAVSYTNTSHQQDACEALK 157
Query: 314 KAAKLEPNCMSTRYAVAVSRIKDAERSQEPTEQLSWAGNEMASILRE-GDPVQIEPPIAW 372
K P Y V K + + + + + + +
Sbjct: 158 NWIKQNPK-----YKYLVKNKKGSPGLTRRMSKSPVDSSVLEGVKELYLEAAHQNGDMID 212
Query: 373 AGFAAVQKTHHEVAAAFETEENELSKMEECAGAGESAFLDQASAVNVAKECLLAALKADP 432
+ F + + A + AAL P
Sbjct: 213 P------DLQTGLGVLF----HLSGEFNR------------------AIDAFNAALTVRP 244
Query: 433 KAAHIWANLANAYY 446
+ +W L
Sbjct: 245 EDYSLWNRLGATLA 258
|
| >4eqf_A PEX5-related protein; accessory protein, tetratricopeptide repeat, TPR; 3.00A {Mus musculus} Length = 365 | Back alignment and structure |
|---|
Score = 57.4 bits (139), Expect = 4e-09
Identities = 30/217 (13%), Positives = 60/217 (27%), Gaps = 17/217 (7%)
Query: 72 PKNAHAHFLLGLMYQRLGQPLKAVSSYEKAEEILLR-CEADIARPELL-SLVQIHHAQCL 129
PK + + K+ E + EA +++ +Q
Sbjct: 164 PKYKYLVKNKKGSPGLTRRMSKSPVDSSVLEGVKELYLEAAHQNGDMIDPDLQTGLGVLF 223
Query: 130 LPESSGDNSLDKELEPEELEEILSKLKESMQSDTRQAVVWNTLGLILLKSGRLQSSISVL 189
E + ++ +WN LG L R + ++
Sbjct: 224 -----------HLSG--EFNRAIDAFNAALTVRPEDYSLWNRLGATLANGDRSEEAVEAY 270
Query: 190 SSLLAVDPNNCDCIGNLGIAYFQSGDMEQSAKCFQDLILKDQNHPAALINYAALLLCKYG 249
+ L + P NLGI+ G ++ F + + +
Sbjct: 271 TRALEIQPGFIRSRYNLGISCINLGAYREAVSNFLTALSLQRKSRNQQQVPHPAISGNIW 330
Query: 250 SVLAGAGANTGEGACLDQASAVNVAKECLLAALKADP 286
+ L A + + A+ ++ + LL A DP
Sbjct: 331 AALRIALSLMDQPELFQAANLGDL--DVLLRAFNLDP 365
|
| >3as5_A MAMA; tetratricopeptide repeats (TPR) containing protein, TPR PROT protein-protein interactions, protein binding; 2.00A {Magnetospirillum magnetotacticum} PDB: 3as4_A 3asd_A 3asg_A 3ash_A 3as8_A 3asf_A Length = 186 | Back alignment and structure |
|---|
Score = 61.3 bits (150), Expect = 3e-11
Identities = 30/170 (17%), Positives = 55/170 (32%), Gaps = 26/170 (15%)
Query: 166 AVVWNTLGLILLKSGRLQSSISVLSSLLAVDPNNCDCIGNLGIAYFQSGDMEQSAKCFQD 225
V LG+ +K+G + +L LA P+N LG+ Y Q + +
Sbjct: 42 VDVALHLGIAYVKTGAVDRGTELLERSLADAPDNVKVATVLGLTYVQVQKYDLAVPLLIK 101
Query: 226 LILKDQNHPAALINYAALLLCKYGSVLAGAGANTGEGACLDQASAVNVAKECLLAALKAD 285
+ + + G L G D+A + AL
Sbjct: 102 VAEANPINFNVRFRL--------GVALDNLGR-------FDEA------IDSFKIALGLR 140
Query: 286 PKAAHIWANLANAYYLTGDHRSSGKCLEKAAKLEPNCMSTRYAVAVSRIK 335
P + +A +Y G H + +KA +L+ +V ++ +
Sbjct: 141 PNEGKVHRAIAFSYEQMGRHEEALPHFKKANELDEG-----ASVELALVP 185
|
| >3as5_A MAMA; tetratricopeptide repeats (TPR) containing protein, TPR PROT protein-protein interactions, protein binding; 2.00A {Magnetospirillum magnetotacticum} PDB: 3as4_A 3asd_A 3asg_A 3ash_A 3as8_A 3asf_A Length = 186 | Back alignment and structure |
|---|
Score = 60.2 bits (147), Expect = 7e-11
Identities = 26/156 (16%), Positives = 53/156 (33%), Gaps = 21/156 (13%)
Query: 166 AVVWNTLGLILLKSGRLQSSISVLSSLLAVDPNNCDCIGNLGIAYFQSGDMEQSAKCFQD 225
V + G+ K+GR ++ +L + D + D +LGIAY ++G +++ + +
Sbjct: 8 QVYYRDKGISHAKAGRYSQAVMLLEQVYDADAFDVDVALHLGIAYVKTGAVDRGTELLER 67
Query: 226 LILKDQNHPAALINYAALLLCKYGSVLAGAGANTGEGACLDQASAVNVAKECLLAALKAD 285
+ ++ + D A L+ +A+
Sbjct: 68 SLADAPDNVKVATVLGLTY------------VQVQK---YDL------AVPLLIKVAEAN 106
Query: 286 PKAAHIWANLANAYYLTGDHRSSGKCLEKAAKLEPN 321
P ++ L A G + + A L PN
Sbjct: 107 PINFNVRFRLGVALDNLGRFDEAIDSFKIALGLRPN 142
|
| >3as5_A MAMA; tetratricopeptide repeats (TPR) containing protein, TPR PROT protein-protein interactions, protein binding; 2.00A {Magnetospirillum magnetotacticum} PDB: 3as4_A 3asd_A 3asg_A 3ash_A 3as8_A 3asf_A Length = 186 | Back alignment and structure |
|---|
Score = 54.0 bits (131), Expect = 1e-08
Identities = 26/166 (15%), Positives = 55/166 (33%), Gaps = 23/166 (13%)
Query: 72 PKNAHAHFLLGLMYQRLGQPLKAVSSYEKAEEILLRCEADIARPELLSLVQIHHAQCLLP 131
+ LG+ Y + G + E++ P+ V++
Sbjct: 39 AFDVDVALHLGIAYVKTGAVDRGTELLERSLAD---------APDN---VKVATVL---- 82
Query: 132 ESSGDNSLDKELEPEELEEILSKLKESMQSDTRQAVVWNTLGLILLKSGRLQSSISVLSS 191
G + +++ + + + L + +++ V LG+ L GR +I
Sbjct: 83 ---G-LTY-VQVQ--KYDLAVPLLIKVAEANPINFNVRFRLGVALDNLGRFDEAIDSFKI 135
Query: 192 LLAVDPNNCDCIGNLGIAYFQSGDMEQSAKCFQDLILKDQNHPAAL 237
L + PN + +Y Q G E++ F+ D+ L
Sbjct: 136 ALGLRPNEGKVHRAIAFSYEQMGRHEEALPHFKKANELDEGASVEL 181
|
| >3as5_A MAMA; tetratricopeptide repeats (TPR) containing protein, TPR PROT protein-protein interactions, protein binding; 2.00A {Magnetospirillum magnetotacticum} PDB: 3as4_A 3asd_A 3asg_A 3ash_A 3as8_A 3asf_A Length = 186 | Back alignment and structure |
|---|
Score = 52.5 bits (127), Expect = 3e-08
Identities = 29/224 (12%), Positives = 63/224 (28%), Gaps = 44/224 (19%)
Query: 72 PKNAHAHFLLGLMYQRLGQPLKAVSSYEKAEEILLRCEADIARPELLSLVQIHHAQCLLP 131
+ G+ + + G+ +AV E+ + L
Sbjct: 5 DIRQVYYRDKGISHAKAGRYSQAVMLLEQVYDA---------DAFD------VDVALHL- 48
Query: 132 ESSGDNSLDKELEPEELEEILSKLKESMQSDTRQAVVWNTLGLILLKSGRLQSSISVLSS 191
G + + ++ L+ S+ V LGL ++ + ++ +L
Sbjct: 49 ---G-IAY-VKTG--AVDRGTELLERSLADAPDNVKVATVLGLTYVQVQKYDLAVPLLIK 101
Query: 192 LLAVDPNNCDCIGNLGIAYFQSGDMEQSAKCFQDLILKDQNHPAALINYAALLLCKYGSV 251
+ +P N + LG+A G +++ F+ + N A
Sbjct: 102 VAEANPINFNVRFRLGVALDNLGRFDEAIDSFKIALGLRPNEGKVHRAIAFSY------- 154
Query: 252 LAGAGANTGEGACLDQASAVNVAKECLLAALKADPKAAHIWANL 295
G ++ A A + D A+ A +
Sbjct: 155 -----EQMGR---HEE------ALPHFKKANELDEGASVELALV 184
|
| >3as5_A MAMA; tetratricopeptide repeats (TPR) containing protein, TPR PROT protein-protein interactions, protein binding; 2.00A {Magnetospirillum magnetotacticum} PDB: 3as4_A 3asd_A 3asg_A 3ash_A 3as8_A 3asf_A Length = 186 | Back alignment and structure |
|---|
Score = 45.1 bits (108), Expect = 1e-05
Identities = 19/135 (14%), Positives = 36/135 (26%), Gaps = 26/135 (19%)
Query: 196 DPNNCDCIGNLGIAYFQSGDMEQSAKCFQDLILKDQNHPAALINYAALLLCKYGSVLAGA 255
D + GI++ ++G Q+ + + D ++ G
Sbjct: 4 DDIRQVYYRDKGISHAKAGRYSQAVMLLEQVYDADAFDVDVALH--------LGIAYVKT 55
Query: 256 GANTGEGACLDQASAVNVAKECLLAALKADPKAAHIWANLANAYYLTGDHRSSGKCLEKA 315
G +D+ E L +L P + L Y + + L K
Sbjct: 56 G-------AVDR------GTELLERSLADAPDNVKVATVLGLTYVQVQKYDLAVPLLIKV 102
Query: 316 AKLEPNCMSTRYAVA 330
A+ P
Sbjct: 103 AEANPI-----NFNV 112
|
| >3gyz_A Chaperone protein IPGC; asymmetric homodimer, tetratricopeptide repeat, TPR, chapero virulence; 2.15A {Shigella flexneri} PDB: 3gz1_A 3gz2_A 3ks2_A Length = 151 | Back alignment and structure |
|---|
Score = 60.2 bits (146), Expect = 4e-11
Identities = 14/134 (10%), Positives = 34/134 (25%), Gaps = 21/134 (15%)
Query: 188 VLSSLLAVDPNNCDCIGNLGIAYFQSGDMEQSAKCFQDLILKDQNHPAALINYAALLLCK 247
L + A+ + D I + ++ G +E++ F+ L + D + ++
Sbjct: 24 TLKDINAIPDDMMDDIYSYAYDFYNKGRIEEAEVFFRFLCIYDFYNVDYIMGL------- 76
Query: 248 YGSVLAGAGANTGEGACLDQASAVNVAKECLLAALKADPKAAHIWANLANAYYLTGDHRS 307
A A + A +
Sbjct: 77 --------------AAIYQIKEQFQQAADLYAVAFALGKNDYTPVFHTGQCQLRLKAPLK 122
Query: 308 SGKCLEKAAKLEPN 321
+ +C E + +
Sbjct: 123 AKECFELVIQHSND 136
|
| >3gyz_A Chaperone protein IPGC; asymmetric homodimer, tetratricopeptide repeat, TPR, chapero virulence; 2.15A {Shigella flexneri} PDB: 3gz1_A 3gz2_A 3ks2_A Length = 151 | Back alignment and structure |
|---|
Score = 54.4 bits (131), Expect = 4e-09
Identities = 17/112 (15%), Positives = 33/112 (29%), Gaps = 3/112 (2%)
Query: 137 NSLDKELEPEELEEILSK---LKESMQSDTRQAVVWNTLGLILLKSGRLQSSISVLSSLL 193
N + E + + ++ LK+ + GR++ + L
Sbjct: 4 NITENESISTAVIDAINSGATLKDINAIPDDMMDDIYSYAYDFYNKGRIEEAEVFFRFLC 63
Query: 194 AVDPNNCDCIGNLGIAYFQSGDMEQSAKCFQDLILKDQNHPAALINYAALLL 245
D N D I L Y +Q+A + +N + + L
Sbjct: 64 IYDFYNVDYIMGLAAIYQIKEQFQQAADLYAVAFALGKNDYTPVFHTGQCQL 115
|
| >2q7f_A YRRB protein; TPR, protein binding; 2.49A {Bacillus subtilis} SCOP: k.38.1.1 Length = 243 | Back alignment and structure |
|---|
Score = 61.8 bits (151), Expect = 5e-11
Identities = 30/234 (12%), Positives = 73/234 (31%), Gaps = 44/234 (18%)
Query: 72 PKNAHAHFLLGLMYQRLGQPLKAVSSYEKAEEILLRCEADIARPELLSLVQIHHAQCLLP 131
++A + + + + +A++ Y+KA E+ ++
Sbjct: 54 KEDAIPYINFANLLSSVNELERALAFYDKALEL---------DSSA---ATAYY------ 95
Query: 132 ESSGDNSLDKELEPEELEEILSKLKESMQSDTRQAVVWNTLGLILLKSGRLQSSISVLSS 191
+G N E +E ++++++ ++ LG +L+K + + ++ L
Sbjct: 96 -GAG-NVY-VVKE--MYKEAKDMFEKALRAGMENGDLFYMLGTVLVKLEQPKLALPYLQR 150
Query: 192 LLAVDPNNCDCIGNLGIAYFQSGDMEQSAKCFQDLILKDQNHPAALINYAALLLCKYGSV 251
+ ++ N+ + G+ G ++++ F + +D H A N
Sbjct: 151 AVELNENDTEARFQFGMCLANEGMLDEALSQFAAVTEQDPGHADAFYNA----------- 199
Query: 252 LAGAGANTGEGACLDQASAVNVAKECLLAALKADPKAAHIWANLANAYYLTGDH 305
G A E L A+ P + H
Sbjct: 200 ----------GVTYAYKENREKALEMLDKAIDIQPDHMLALHAKKLLGHHHHHH 243
|
| >2q7f_A YRRB protein; TPR, protein binding; 2.49A {Bacillus subtilis} SCOP: k.38.1.1 Length = 243 | Back alignment and structure |
|---|
Score = 59.8 bits (146), Expect = 2e-10
Identities = 28/165 (16%), Positives = 53/165 (32%), Gaps = 26/165 (15%)
Query: 166 AVVWNTLGLILLKSGRLQSSISVLSSLLAVDPNNCDCIGNLGIAYFQSGDMEQSAKCFQD 225
A + G + + + + + L N D LG + + + Q
Sbjct: 91 ATAYYGAGNVYVVKEMYKEAKDMFEKALRAGMENGDLFYMLGTVLVKLEQPKLALPYLQR 150
Query: 226 LILKDQNHPAALINYAALLLCKYGSVLAGAGANTGEGACLDQASAVNVAKECLLAALKAD 285
+ ++N A + L AN G LD+A A + D
Sbjct: 151 AVELNENDTEARFQFGMCL------------ANEGM---LDEA------LSQFAAVTEQD 189
Query: 286 PKAAHIWANLANAYYLTGDHRSSGKCLEKAAKLEPNCMSTRYAVA 330
P A + N Y + + + L+KA ++P+ + +A
Sbjct: 190 PGHADAFYNAGVTYAYKENREKALEMLDKAIDIQPD-----HMLA 229
|
| >2e2e_A Formate-dependent nitrite reductase complex NRFG; TPR, cytochrome C biogenesis, O157:H7 EDL933, formate- nitrite reductase complex, lyase; 2.05A {Escherichia coli} Length = 177 | Back alignment and structure |
|---|
Score = 60.3 bits (146), Expect = 5e-11
Identities = 22/170 (12%), Positives = 48/170 (28%), Gaps = 20/170 (11%)
Query: 176 LLKSGRLQSSISVLSSLLAVDPNNCDCIGNLGIAYFQSGDMEQSAKCFQDLILKDQNHPA 235
++ + L + +P N + LG Y D S ++ + +
Sbjct: 20 FASQQNPEAQLQALQDKIRANPQNSEQWALLGEYYLWQNDYSNSLLAYRQALQLRGENAE 79
Query: 236 ALINYAALLLCKYGSVLAGAGANTGEGACLDQASAVNVAKECLLAALKADPKAAHIWANL 295
A +L + T + + + AL D L
Sbjct: 80 LYAALATVLY------YQASQHMTAQ------------TRAMIDKALALDSNEITALMLL 121
Query: 296 ANAYYLTGDHRSSGKCLEKAAKLEPNCMSTRYAVAVSRIKDAERSQEPTE 345
A+ ++ ++ + + +K L V I A+ Q ++
Sbjct: 122 ASDAFMQANYAQAIELWQKVMDLNSP--RINRTQLVESINMAKLLQRRSD 169
|
| >2e2e_A Formate-dependent nitrite reductase complex NRFG; TPR, cytochrome C biogenesis, O157:H7 EDL933, formate- nitrite reductase complex, lyase; 2.05A {Escherichia coli} Length = 177 | Back alignment and structure |
|---|
Score = 45.2 bits (107), Expect = 7e-06
Identities = 14/128 (10%), Positives = 40/128 (31%), Gaps = 20/128 (15%)
Query: 72 PKNAHAHFLLGLMYQRLGQPLKAVSSYEKAEEILLRCEADIARPELLSLVQIHHAQCLLP 131
P+N+ LLG Y ++ +Y +A ++ + A L
Sbjct: 41 PQNSEQWALLGEYYLWQNDYSNSLLAYRQALQLRGENAE----------LYAALATVLYY 90
Query: 132 ESSGDNSLDKELEPEELEEILSKLKESMQSDTRQAVVWNTLGLILLKSGRLQSSISVLSS 191
++S + + + + +++ D+ + L +I +
Sbjct: 91 QASQHMT----------AQTRAMIDKALALDSNEITALMLLASDAFMQANYAQAIELWQK 140
Query: 192 LLAVDPNN 199
++ ++
Sbjct: 141 VMDLNSPR 148
|
| >2e2e_A Formate-dependent nitrite reductase complex NRFG; TPR, cytochrome C biogenesis, O157:H7 EDL933, formate- nitrite reductase complex, lyase; 2.05A {Escherichia coli} Length = 177 | Back alignment and structure |
|---|
Score = 44.9 bits (106), Expect = 1e-05
Identities = 16/122 (13%), Positives = 36/122 (29%), Gaps = 19/122 (15%)
Query: 274 AKECLLAALKADPKAAHIWANLANAYYLTGDHRSSGKCLEKAAKLEPNCMSTR--YAVAV 331
+ L ++A+P+ + WA L Y D+ +S +A +L A +
Sbjct: 29 QLQALQDKIRANPQNSEQWALLGEYYLWQNDYSNSLLAYRQALQLRGENAELYAALATVL 88
Query: 332 SRIKDAERSQEPTEQLSWAGNEMASILREGDPVQIEP--PIAW--AGFAAVQKTHHEVAA 387
+ + + A + ++ A A + ++ A
Sbjct: 89 YYQASQHMTAQTRAMIDKA-------------LALDSNEITALMLLASDAFMQANYAQAI 135
Query: 388 AF 389
Sbjct: 136 EL 137
|
| >1hh8_A P67PHOX, NCF-2, neutrophil cytosol factor 2; cell cycle, phagocyte oxidase factor, SH3 domain, repeat, TPR repeat cell cycle; HET: FLC; 1.8A {Homo sapiens} SCOP: a.118.8.1 PDB: 1wm5_A 1e96_B* Length = 213 | Back alignment and structure |
|---|
Score = 59.0 bits (143), Expect = 3e-10
Identities = 26/181 (14%), Positives = 61/181 (33%), Gaps = 18/181 (9%)
Query: 163 TRQAVVWNTLGLILLKSGRLQSSISVLSSLLAVDPNNCDCIGNLGIAYFQSGDMEQSAKC 222
+A+ G++ + ++ S++ + N+G Y +M ++ K
Sbjct: 3 LVEAISLWNEGVLAADKKDWKGALDAFSAV---QDPHSRICFNIGCMYTILKNMTEAEKA 59
Query: 223 FQDLILKDQNHPAALINYAALL--LCKYGSVLAGAGANTGEGACLDQASAV---NVAKEC 277
F I +D++ A L KY + L +A N +
Sbjct: 60 FTRSINRDKHLAVAYFQRGMLYYQTEKYDLAIK----------DLKEALIQLRGNQLIDY 109
Query: 278 LLAALKADPKAAHIWANLANAYYLTGDHRSSGKCLEKAAKLEPNCMSTRYAVAVSRIKDA 337
+ L+ A + N+A Y + + + + L A ++ ++ A+ +
Sbjct: 110 KILGLQFKLFACEVLYNIAFMYAKKEEWKKAEEQLALATSMKSEPRHSKIDKAMECVWKQ 169
Query: 338 E 338
+
Sbjct: 170 K 170
|
| >1hxi_A PEX5, peroxisome targeting signal 1 receptor PEX5; alpha helical, transport protein; 1.60A {Trypanosoma brucei} SCOP: a.118.8.1 Length = 121 | Back alignment and structure |
|---|
Score = 55.9 bits (135), Expect = 6e-10
Identities = 19/123 (15%), Positives = 35/123 (28%), Gaps = 21/123 (17%)
Query: 169 WNTLGLILLKSGRLQSSISVLSSLLAVDPNNCDCIGNLGIAYFQSGDMEQSAKCFQDLIL 228
GL +LK L + ++ +P + +LG+ ++ + +
Sbjct: 20 PMEEGLSMLKLANLAEAALAFEAVCQKEPEREEAWRSLGLTQAENEKDGLAIIALNHARM 79
Query: 229 KDQNHPAALINYAALLLCKYGSVLAGAGANTGEGACLDQASAVNVAKECLLAALKADPKA 288
D A LA + N N A L A L + P+
Sbjct: 80 LDPKDIAVHAA------------LAVSHTNEHN---------ANAALASLRAWLLSQPQY 118
Query: 289 AHI 291
+
Sbjct: 119 EQL 121
|
| >1hxi_A PEX5, peroxisome targeting signal 1 receptor PEX5; alpha helical, transport protein; 1.60A {Trypanosoma brucei} SCOP: a.118.8.1 Length = 121 | Back alignment and structure |
|---|
Score = 54.8 bits (132), Expect = 1e-09
Identities = 17/117 (14%), Positives = 37/117 (31%), Gaps = 21/117 (17%)
Query: 205 NLGIAYFQSGDMEQSAKCFQDLILKDQNHPAALINYAALLLCKYGSVLAGAGANTGEGAC 264
G++ + ++ ++A F+ + K+ A + G
Sbjct: 22 EEGLSMLKLANLAEAALAFEAVCQKEPEREEAWRSL---------------------GLT 60
Query: 265 LDQASAVNVAKECLLAALKADPKAAHIWANLANAYYLTGDHRSSGKCLEKAAKLEPN 321
+ +A L A DPK + A LA ++ + ++ L +P
Sbjct: 61 QAENEKDGLAIIALNHARMLDPKDIAVHAALAVSHTNEHNANAALASLRAWLLSQPQ 117
|
| >1hxi_A PEX5, peroxisome targeting signal 1 receptor PEX5; alpha helical, transport protein; 1.60A {Trypanosoma brucei} SCOP: a.118.8.1 Length = 121 | Back alignment and structure |
|---|
Score = 53.2 bits (128), Expect = 5e-09
Identities = 14/92 (15%), Positives = 34/92 (36%)
Query: 143 LEPEELEEILSKLKESMQSDTRQAVVWNTLGLILLKSGRLQSSISVLSSLLAVDPNNCDC 202
L+ L E + Q + + W +LGL ++ + +I L+ +DP +
Sbjct: 28 LKLANLAEAALAFEAVCQKEPEREEAWRSLGLTQAENEKDGLAIIALNHARMLDPKDIAV 87
Query: 203 IGNLGIAYFQSGDMEQSAKCFQDLILKDQNHP 234
L +++ + + + +L +
Sbjct: 88 HAALAVSHTNEHNANAALASLRAWLLSQPQYE 119
|
| >1hxi_A PEX5, peroxisome targeting signal 1 receptor PEX5; alpha helical, transport protein; 1.60A {Trypanosoma brucei} SCOP: a.118.8.1 Length = 121 | Back alignment and structure |
|---|
Score = 42.8 bits (101), Expect = 2e-05
Identities = 15/72 (20%), Positives = 28/72 (38%)
Query: 261 EGACLDQASAVNVAKECLLAALKADPKAAHIWANLANAYYLTGDHRSSGKCLEKAAKLEP 320
EG + + + + A A + +P+ W +L + L A L+P
Sbjct: 23 EGLSMLKLANLAEAALAFEAVCQKEPEREEAWRSLGLTQAENEKDGLAIIALNHARMLDP 82
Query: 321 NCMSTRYAVAVS 332
++ A+AVS
Sbjct: 83 KDIAVHAALAVS 94
|
| >3q15_A PSP28, response regulator aspartate phosphatase H; tetratricopeptide repeat, 3-helix bundle, phosphorelay signa transduction, phosphatase; 2.19A {Bacillus subtilis} Length = 378 | Back alignment and structure |
|---|
Score = 58.7 bits (142), Expect = 1e-09
Identities = 28/260 (10%), Positives = 69/260 (26%), Gaps = 45/260 (17%)
Query: 72 PKNAHAHFLLGLMYQRLGQPLKAVSSYEKAEEILLRCEADIARPELLSLVQIHHAQCLLP 131
+ A HF + Y + Q ++ +A +I I Q L
Sbjct: 138 IEKAEFHFKVAEAYYHMKQTHVSMYHILQALDIYQNHPLY----------SIRTIQSLF- 186
Query: 132 ESSGDNSLDKELEPEELEEILSK---LKESMQSDTRQAVVWNTLGLILLKSGRLQSSISV 188
N D + ++ L L +Q+D A+ + +SG Q ++
Sbjct: 187 -VIAGNYDDFK-HYDKALPHLEAALELAMDIQNDRFIAISLLNIANSYDRSGDDQMAVEH 244
Query: 189 LSSLLAV-----DPNNCDCIGNLGIAYFQSGDMEQSAKCFQDLI-----LKDQNHPAALI 238
V + L ++G +++ + ++ + + + +
Sbjct: 245 FQKAAKVSREKVPDLLPKVLFGLSWTLCKAGQTQKAFQFIEEGLDHITARSHKFYKELFL 304
Query: 239 NYAALLLCKYGSVLAGAGANTGEGACLDQASAVNVAKECLLAALKADPKAAHIWANLANA 298
A+ T + + ++ ++ + A
Sbjct: 305 FLQAV------------YKETVDERKIHD--LLSYFEK-----KNLHAYIEACARSAAAV 345
Query: 299 YYLTGDHRSSGKCLEKAAKL 318
+ + + K K
Sbjct: 346 FESSCHFEQAAAFYRKVLKA 365
|
| >3q15_A PSP28, response regulator aspartate phosphatase H; tetratricopeptide repeat, 3-helix bundle, phosphorelay signa transduction, phosphatase; 2.19A {Bacillus subtilis} Length = 378 | Back alignment and structure |
|---|
Score = 46.3 bits (110), Expect = 1e-05
Identities = 49/264 (18%), Positives = 85/264 (32%), Gaps = 28/264 (10%)
Query: 80 LLGLMYQ--RLGQPLKAVSSYEKAEEILLRCEADIARPELLSLVQIHHAQCLLPESSGDN 137
+ Y+ R A + E+ + + E D SL+ H L G
Sbjct: 15 KINEWYKMIRQFSVPDAEILKAEVEQDIQQMEEDQDLLIYYSLMCFRHQLMLDYLEPGKT 74
Query: 138 SLDKELEPEELEEILSKLKESMQSDTRQAVVWNTLGLILLKSGRLQSSISVLSSLLAVDP 197
++ E LE I + K+ + + G+ +I P
Sbjct: 75 YGNRPTVTELLETIETPQKKL--TGLLKYYSLFFRGMYEFDQKEYVEAIGYYREAEKELP 132
Query: 198 NNCDCIG------NLGIAYFQSGDMEQSAKCFQDLILKDQNHPAALINYAALLLCKYGSV 251
D I + AY+ S + QNHP I L V
Sbjct: 133 FVSDDIEKAEFHFKVAEAYYHMKQTHVSMYHILQALDIYQNHPLYSIRTIQSL-----FV 187
Query: 252 LAGAGANTGEGACLDQA-----SAVNVAKECLLAALKADPKAAHIWANLANAYYLTGDHR 306
+AG + D+A +A+ +A + ++ D A N+AN+Y +GD +
Sbjct: 188 IAGNYDDFKH---YDKALPHLEAALELAMD-----IQNDRFIAISLLNIANSYDRSGDDQ 239
Query: 307 SSGKCLEKAAKLEPNCMSTRYAVA 330
+ + +KAAK+ +
Sbjct: 240 MAVEHFQKAAKVSREKVPDLLPKV 263
|
| >3mkr_A Coatomer subunit epsilon; tetratricopeptide repeats (TPR), beta-hairpin, alpha-solenoi transport protein; 2.60A {Bos taurus} Length = 291 | Back alignment and structure |
|---|
Score = 56.3 bits (135), Expect = 5e-09
Identities = 26/176 (14%), Positives = 49/176 (27%), Gaps = 30/176 (17%)
Query: 72 PKNAHAHFLLGLMYQRLGQPLKAVSSYEKAEEILLRCEADIARPELLSLVQIHHAQCLLP 131
N + +Y P A+ + + + + VQI
Sbjct: 98 VTNTTFLLMAASIYFYDQNPDAALRTLHQGDSLECM----------AMTVQILLKL---- 143
Query: 132 ESSGDNSLDKELEPEELEEILSKLKESMQSDTRQAVVWNTLGLILLKSG--RLQSSISVL 189
+ L+ +LK+ D + + L +G +LQ + +
Sbjct: 144 --------------DRLDLARKELKKMQDQDEDATLTQLATAWVSLAAGGEKLQDAYYIF 189
Query: 190 SSLLAVDPNNCDCIGNLGIAYFQSGDMEQSAKCFQDLILKDQNHPAALINYAALLL 245
+ + + G E + Q+ + KD HP LIN L
Sbjct: 190 QEMADKCSPTLLLLNGQAACHMAQGRWEAAEGVLQEALDKDSGHPETLINLVVLSQ 245
|
| >3mkr_A Coatomer subunit epsilon; tetratricopeptide repeats (TPR), beta-hairpin, alpha-solenoi transport protein; 2.60A {Bos taurus} Length = 291 | Back alignment and structure |
|---|
Score = 49.7 bits (118), Expect = 8e-07
Identities = 36/269 (13%), Positives = 73/269 (27%), Gaps = 27/269 (10%)
Query: 74 NAHAHFLLGLMYQ---RLGQPLKAVSSYEKAEEILLRCEADIARPELLSLVQIHHAQCLL 130
+ F +G YQ Q +K S E + A +A+ + ++
Sbjct: 5 DVKNAFYIGS-YQQCINEAQRVKPSSPERDVERDVFLYRAYLAQRKYGVVLDEIKPSSAP 63
Query: 131 PESSGDNSLDKELEPEELEEILSKLKESM--QSDTRQAVVWNTLGLILLKSGRLQSSISV 188
+ + + I+++L M D I +++
Sbjct: 64 ELQAVRMFAEYLASHSRRDAIVAELDREMSRSVDVTNTTFLLMAASIYFYDQNPDAALRT 123
Query: 189 LSSLLAVDPNNCDCIGNLGIAYFQSGDMEQSAKCFQDLILKDQNHPAALINYAALLLCKY 248
L ++ +C+ + ++ + K + + +D++ + A + L
Sbjct: 124 LH-----QGDSLECMAMTVQILLKLDRLDLARKELKKMQDQDEDATLTQLATAWVSLAAG 178
Query: 249 GSVLAGA---------------GANTGEGACLDQASAVNVAKECLLAALKADPKAAHIWA 293
G L A G+ AC A+ L AL D
Sbjct: 179 GEKLQDAYYIFQEMADKCSPTLLLLNGQAACHMAQGRWEAAEGVLQEALDKDSGHPETLI 238
Query: 294 NLANAYYLTGDHRSSGKC-LEKAAKLEPN 321
NL G L + +
Sbjct: 239 NLVVLSQHLGKPPEVTNRYLSQLKDAHRS 267
|
| >3ulq_A Response regulator aspartate phosphatase F; tetratricopeptide repeat, response regulator helix-turn-HELX binding, 3-helix bundle; 2.30A {Bacillus subtilis} Length = 383 | Back alignment and structure |
|---|
Score = 56.0 bits (135), Expect = 1e-08
Identities = 29/258 (11%), Positives = 71/258 (27%), Gaps = 46/258 (17%)
Query: 75 AHAHFLLGLMYQRLGQPLKAVSSYEKAEEILLRCEADIARPELLSLVQIHHAQCLLPESS 134
A F + Y + Q ++ +A EI I QC
Sbjct: 143 AEFFFKMSESYYYMKQTYFSMDYARQAYEIYKE----------HEAYNIRLLQCHS--LF 190
Query: 135 GDNSLDKELEPEELEEILSK---LKESMQSDTRQAVVWNTLGLILLKSGRLQSSISVLSS 191
N LD + + E+ K + E+ + +GL + + +I
Sbjct: 191 ATNFLDLK-QYEDAISHFQKAYSMAEAEKQPQLMGRTLYNIGLCKNSQSQYEDAIPYFKR 249
Query: 192 LLAVD------PNNCDCIGNLGIAYFQSGDMEQSAKCFQDLI-----LKDQNHPAALINY 240
+AV P+ + +++ G ++++ + + D + +
Sbjct: 250 AIAVFEESNILPSLPQAYFLITQIHYKLGKIDKAHEYHSKGMAYSQKAGDVIYLSEFEFL 309
Query: 241 AALLLCKYGSVLAGAGANTGEGACLDQASAVNVAKECLLAALKADPKAAHIWANLANAYY 300
+L + + + L + ++A Y+
Sbjct: 310 KSL------------YLSGPDEEAIQGF-------FDFLESKMLYADLEDFAIDVAKYYH 350
Query: 301 LTGDHRSSGKCLEKAAKL 318
+ + + K ++
Sbjct: 351 ERKNFQKASAYFLKVEQV 368
|
| >2fo7_A Synthetic consensus TPR protein; tetratricopeptide repeat, consensus protein, superhelix, de novo protein; 2.30A {Synthetic} SCOP: k.38.1.1 PDB: 2hyz_A Length = 136 | Back alignment and structure |
|---|
Score = 52.0 bits (126), Expect = 2e-08
Identities = 44/156 (28%), Positives = 67/156 (42%), Gaps = 21/156 (13%)
Query: 166 AVVWNTLGLILLKSGRLQSSISVLSSLLAVDPNNCDCIGNLGIAYFQSGDMEQSAKCFQD 225
A W LG K G +I L +DP + + NLG AY++ GD +++ + +Q
Sbjct: 1 AEAWYNLGNAYYKQGDYDEAIEYYQKALELDPRSAEAWYNLGNAYYKQGDYDEAIEYYQK 60
Query: 226 LILKDQNHPAALINYAALLLCKYGSVLAGAGANTGEGACLDQASAVNVAKECLLAALKAD 285
+ D A N G+ G D+ A E AL+ D
Sbjct: 61 ALELDPRSAEAWYN--------LGNAYYKQGD-------YDE------AIEYYQKALELD 99
Query: 286 PKAAHIWANLANAYYLTGDHRSSGKCLEKAAKLEPN 321
P++A W NL NAYY GD+ + + +KA +L+P
Sbjct: 100 PRSAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPR 135
|
| >2fo7_A Synthetic consensus TPR protein; tetratricopeptide repeat, consensus protein, superhelix, de novo protein; 2.30A {Synthetic} SCOP: k.38.1.1 PDB: 2hyz_A Length = 136 | Back alignment and structure |
|---|
Score = 44.3 bits (106), Expect = 9e-06
Identities = 37/150 (24%), Positives = 64/150 (42%), Gaps = 23/150 (15%)
Query: 75 AHAHFLLGLMYQRLGQPLKAVSSYEKAEEILLRCEADIARPELLSLVQIHHAQCLLPESS 134
A A + LG Y + G +A+ Y+KA E+ P A L
Sbjct: 1 AEAWYNLGNAYYKQGDYDEAIEYYQKALEL---------DPRS------AEAWYNL---- 41
Query: 135 GDNSLDKELEPEELEEILSKLKESMQSDTRQAVVWNTLGLILLKSGRLQSSISVLSSLLA 194
G N+ + + +E + +++++ D R A W LG K G +I L
Sbjct: 42 G-NAY-YKQ--GDYDEAIEYYQKALELDPRSAEAWYNLGNAYYKQGDYDEAIEYYQKALE 97
Query: 195 VDPNNCDCIGNLGIAYFQSGDMEQSAKCFQ 224
+DP + + NLG AY++ GD +++ + +Q
Sbjct: 98 LDPRSAEAWYNLGNAYYKQGDYDEAIEYYQ 127
|
| >1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 | Back alignment and structure |
|---|
Score = 54.1 bits (129), Expect = 8e-08
Identities = 38/280 (13%), Positives = 76/280 (27%), Gaps = 112/280 (40%)
Query: 52 SREEKVSSLKTGL----------VH-------------VAR------KMPKNAH------ 76
SR + L+ L + V KM
Sbjct: 132 SRLQPYLKLRQALLELRPAKNVLIDGVLGSGKTWVALDVCLSYKVQCKMDFKIFWLNLKN 191
Query: 77 ---AHFLLGLM---YQRLGQPLKAVSSYEKAEEILLRCEADIARPELLSLVQIH-HAQCL 129
+L ++ ++ + S + + I LR + + EL L++ + CL
Sbjct: 192 CNSPETVLEMLQKLLYQIDPNWTSRSDH--SSNIKLRIHS--IQAELRRLLKSKPYENCL 247
Query: 130 L----------------------------------PESSGDNSLDKE---LEPEELEEIL 152
L ++ SLD L P+E++ +L
Sbjct: 248 LVLLNVQNAKAWNAFNLSCKILLTTRFKQVTDFLSAATTTHISLDHHSMTLTPDEVKSLL 307
Query: 153 SK-LKESMQSDTRQAVVWNTLGLILLKSGRLQSSISVLSSLLAVDPN--------NCDCI 203
K L Q R+ + N +S+++ + NCD +
Sbjct: 308 LKYLDCRPQDLPREVLTTNPR------------RLSIIAESIRDGLATWDNWKHVNCDKL 355
Query: 204 GNL---GIAYFQSGDMEQSAKCFQDL-IL-KDQNHPAALI 238
+ + + + + F L + + P L+
Sbjct: 356 TTIIESSLNVLEPAEYRK---MFDRLSVFPPSAHIPTILL 392
|
| >4a1s_A PINS, partner of inscuteable; cell cycle, LGN, mitotic spindle orientation, asymmetric CEL divisions; 2.10A {Drosophila melanogaster} Length = 411 | Back alignment and structure |
|---|
Score = 52.7 bits (127), Expect = 1e-07
Identities = 44/267 (16%), Positives = 77/267 (28%), Gaps = 39/267 (14%)
Query: 72 PKNAHAHFLLGLMYQRLGQPLKAVSSYEKAEEILLRCEADIARPELLSLVQIHHAQCLLP 131
L G G V+ ++ A + ++ L +
Sbjct: 45 SSMCLELALEGERLCNAGDCRAGVAFFQAAIQAGTEDLRTLSAI-YSQLGNAYFYL---- 99
Query: 132 ESSGDNSLDKELEPEELEEILSKLKESMQSDTRQAVVWNTLGLILLKSGRLQSSISVLSS 191
GD +K + + + L L +SM +A LG L GR +
Sbjct: 100 ---GD--YNKAM--QYHKHDL-TLAKSMNDRLGEAKSSGNLGNTLKVMGRFDEAAICCER 151
Query: 192 LLAVD------PNNCDCIGNLGIAYFQSGDMEQSAKCFQDLILKDQNHPAALINY-AALL 244
L + + + NLG Y G + + A+ Y L
Sbjct: 152 HLTLARQLGDRLSEGRALYNLGNVYHAKGKHLGQRNPGKFGDDVKEALTRAVEFYQENLK 211
Query: 245 LCKYGSVLAGAGANTGEGACL-----------DQASAVNVAKECLLAALKADPKAAHIWA 293
L + G +G D +A+ +E L A + +AA A
Sbjct: 212 LMR------DLGDRGAQGRACGNLGNTYYLLGDFQAAIEHHQERLRIAREFGDRAAERRA 265
Query: 294 --NLANAYYLTGDHRSSGKCLEKAAKL 318
NL N++ G + + ++ L
Sbjct: 266 NSNLGNSHIFLGQFEDAAEHYKRTLAL 292
|
| >4a1s_A PINS, partner of inscuteable; cell cycle, LGN, mitotic spindle orientation, asymmetric CEL divisions; 2.10A {Drosophila melanogaster} Length = 411 | Back alignment and structure |
|---|
Score = 52.3 bits (126), Expect = 2e-07
Identities = 38/262 (14%), Positives = 76/262 (29%), Gaps = 39/262 (14%)
Query: 74 NAHAHFLLGLMYQRLGQPLKAVSSYEKAEEILLRCEADIARPELLSLVQIHHAQCLLPES 133
++ + + LG +S++ + + + L L C
Sbjct: 7 SSLSASAENVSSLGLGSGGGGTNSHDGNSQQGSGSDGGSS--MCLELALEGERLCNA--- 61
Query: 134 SGDNSLDKELEPEELEEILSKLKESMQSDTRQAVVWNTLGLILLKSGRLQSSISVLSSLL 193
GD + + + E +++ + +++ LG G ++ L
Sbjct: 62 -GD--CRAGV--AFFQAAIQAGTEDLRT---LSAIYSQLGNAYFYLGDYNKAMQYHKHDL 113
Query: 194 AV------DPNNCDCIGNLGIAYFQSGDMEQSAKCFQ---DLILKDQNHP---AALINYA 241
+ GNLG G +++A C + L + + AL N
Sbjct: 114 TLAKSMNDRLGEAKSSGNLGNTLKVMGRFDEAAICCERHLTLARQLGDRLSEGRALYNLG 173
Query: 242 ALL--LCKYGSVLAGAGANTGEGACLDQASAVNVAKECLLAALK------ADPKAAHIWA 293
+ K+ L + A E LK
Sbjct: 174 NVYHAKGKHLGQRNPGKFGDDVKEALTR------AVEFYQENLKLMRDLGDRGAQGRACG 227
Query: 294 NLANAYYLTGDHRSSGKCLEKA 315
NL N YYL GD +++ + ++
Sbjct: 228 NLGNTYYLLGDFQAAIEHHQER 249
|
| >4a1s_A PINS, partner of inscuteable; cell cycle, LGN, mitotic spindle orientation, asymmetric CEL divisions; 2.10A {Drosophila melanogaster} Length = 411 | Back alignment and structure |
|---|
Score = 51.9 bits (125), Expect = 2e-07
Identities = 47/266 (17%), Positives = 85/266 (31%), Gaps = 35/266 (13%)
Query: 72 PKNAHAHFLLGLMYQRLGQPLKAVSSYEKAEEILLRC--EADIARPELLSLVQIHHAQ-- 127
A + LG + +G+ +A E+ + + R L +L ++HA+
Sbjct: 123 LGEAKSSGNLGNTLKVMGRFDEAAICCERHLTLARQLGDRLSEGR-ALYNLGNVYHAKGK 181
Query: 128 CLLPESSGDNSLDKELEPEE----LEEILSKLKESMQSDTRQAVVWNTLGLILLKSGRLQ 183
L + G D + +E L KL + Q LG G Q
Sbjct: 182 HLGQRNPGKFGDDVKEALTRAVEFYQENL-KLMRDLGDRGAQGRACGNLGNTYYLLGDFQ 240
Query: 184 SSISVLSSLLAV------DPNNCDCIGNLGIAYFQSGDMEQSAKCFQ---DLILKDQNHP 234
++I L + NLG ++ G E +A+ ++ L ++
Sbjct: 241 AAIEHHQERLRIAREFGDRAAERRANSNLGNSHIFLGQFEDAAEHYKRTLALAVELGERE 300
Query: 235 AALINYAALLLCKYGSVLAGAGANTGEGACLDQASAVNVAKECLLAA--LKADPKAAHIW 292
+ +L G+ + +A+ L A L A
Sbjct: 301 VEAQSCYSL-----GNTYTLLH---------EFNTAIEYHNRHLAIAQELGDRIGEARAC 346
Query: 293 ANLANAYYLTGDHRSSGKCLEKAAKL 318
+L NA+ G H + K E+ +L
Sbjct: 347 WSLGNAHSAIGGHERALKYAEQHLQL 372
|
| >2h6f_A Protein farnesyltransferase/geranylgeranyltransferase type I alpha subunit; ftase, farnesyltransferase, farnesyl transferase, prenyltransferase, CAAX, RAS, lipid modification, prenylation; HET: SUC FAR; 1.50A {Homo sapiens} SCOP: a.118.6.1 PDB: 1jcq_A* 1ld7_A* 1mzc_A* 1s63_A* 1sa4_A* 1tn6_A* 1ld8_A* 2h6g_A* 2h6h_A* 2h6i_A* 2iej_A* 3e37_A* 2f0y_A* 3ksl_A* 2zir_A* 2zis_A* 1o5m_A* 3ksq_A* 1o1t_A* 1o1s_A* ... Length = 382 | Back alignment and structure |
|---|
Score = 52.0 bits (124), Expect = 2e-07
Identities = 20/182 (10%), Positives = 55/182 (30%), Gaps = 16/182 (8%)
Query: 146 EELEEILSKLKESMQSDTRQAVVWNTLGLILLKSGRLQSSISVLSSLLAVDPNNCDCIGN 205
++L E ++ + ++ + VW+ +++ + ++ +L D N +
Sbjct: 146 KDLHEEMNYITAIIEEQPKNYQVWHHRRVLVEWLRDPSQELEFIADILNQDAKNYHAWQH 205
Query: 206 LGIAYFQSGDMEQSAKCFQDLILKDQNHPAALINYAALLLCKYGSVLAGAGANTGEGACL 265
+ + + L+ +D + + N ++
Sbjct: 206 RQWVIQEFKLWDNELQYVDQLLKEDVRNNSVW-NQRYFVISNTTG--------------Y 250
Query: 266 DQASAVNVAKECLLAALKADPKAAHIWANLANAYYLTGDHRSSGKCLEKAAKLEPNCMST 325
+ + + + L +K P W L G + L + L+P+ S
Sbjct: 251 NDRAVLEREVQYTLEMIKLVPHNESAWNYLKGILQDRGLSKYP-NLLNQLLDLQPSHSSP 309
Query: 326 RY 327
Sbjct: 310 YL 311
|
| >2kat_A Uncharacterized protein; NESG, structure, structural genomics, PSI-2, protein structure initiative; NMR {Bordetella parapertussis} Length = 115 | Back alignment and structure |
|---|
Score = 48.5 bits (116), Expect = 2e-07
Identities = 15/99 (15%), Positives = 36/99 (36%), Gaps = 2/99 (2%)
Query: 148 LEEILSKLKESMQSDTRQAVVWNTLGLILLKSGRLQSSISVLSSLLAVDPNNCDCIGNLG 207
++ I +L+ + T ++ TLG + + +++ L + L DP LG
Sbjct: 1 MQAITERLEAMLAQGTDNMLLRFTLGKTYAEHEQFDAALPHLRAALDFDPTYSVAWKWLG 60
Query: 208 IAYFQSGDMEQSAKCFQDLIL--KDQNHPAALINYAALL 244
GD + + ++ + + + + L
Sbjct: 61 KTLQGQGDRAGARQAWESGLAAAQSRGDQQVVKELQVFL 99
|
| >2kat_A Uncharacterized protein; NESG, structure, structural genomics, PSI-2, protein structure initiative; NMR {Bordetella parapertussis} Length = 115 | Back alignment and structure |
|---|
Score = 38.9 bits (91), Expect = 5e-04
Identities = 9/48 (18%), Positives = 13/48 (27%)
Query: 274 AKECLLAALKADPKAAHIWANLANAYYLTGDHRSSGKCLEKAAKLEPN 321
E L A L + L Y ++ L A +P
Sbjct: 4 ITERLEAMLAQGTDNMLLRFTLGKTYAEHEQFDAALPHLRAALDFDPT 51
|
| >2kck_A TPR repeat; tetratricopeptide repeat, structural genomics, unknown function, PSI-2, protein structure initiative; NMR {Methanococcus maripaludis} Length = 112 | Back alignment and structure |
|---|
Score = 47.4 bits (114), Expect = 5e-07
Identities = 23/131 (17%), Positives = 39/131 (29%), Gaps = 27/131 (20%)
Query: 195 VDPNNCDCIGNLGIAYFQSGDMEQSAKCFQDLILKDQNHPAALINYAALL--LCKYGSVL 252
+ N + G+ + +G+ +S F+ I D + L L +Y
Sbjct: 1 MVDQNPEEYYLEGVLQYDAGNYTESIDLFEKAIQLDPEESKYWLMKGKALYNLERY---- 56
Query: 253 AGAGANTGEGA--CLDQASAVNVAKECLLAALKADPKAAHIWANLANAYYLTGDHRSSGK 310
E A C + + D +WA A+A +
Sbjct: 57 --------EEAVDCYNYV-----------INVIEDEYNKDVWAAKADALRYIEGKEVEAE 97
Query: 311 CLEKAAKLEPN 321
E AKLE +
Sbjct: 98 IAEARAKLEHH 108
|
| >3k9i_A BH0479 protein; putative protein binding protein, structural genomics, joint for structural genomics, JCSG; 2.71A {Bacillus halodurans} Length = 117 | Back alignment and structure |
|---|
Score = 45.5 bits (108), Expect = 3e-06
Identities = 16/90 (17%), Positives = 32/90 (35%), Gaps = 6/90 (6%)
Query: 161 SDTRQAVVWNTLGLILLKSGRLQSSISVLSSLLAVDPNNCDCIGNLGIAYFQSGDMEQSA 220
A + LG G + + +VL++ + PN+ + + G EQ
Sbjct: 22 QGKDLAECYLGLGSTFRTLGEYRKAEAVLANGVKQFPNHQALRVFYAMVLYNLGRYEQGV 81
Query: 221 KCFQDLILKDQNHPA------ALINYAALL 244
+ +I + + A++ YA L
Sbjct: 82 ELLLKIIAETSDDETIQSYKQAILFYADKL 111
|
| >3k9i_A BH0479 protein; putative protein binding protein, structural genomics, joint for structural genomics, JCSG; 2.71A {Bacillus halodurans} Length = 117 | Back alignment and structure |
|---|
Score = 40.1 bits (94), Expect = 2e-04
Identities = 14/111 (12%), Positives = 29/111 (26%), Gaps = 24/111 (21%)
Query: 214 GDMEQSAKCFQ---DLILKDQNHPAALINYAALLLCKYGSVLAGAGANTGEGACLDQASA 270
G Q+ ++ L+ ++ + + GE +A
Sbjct: 4 GLEAQAVPYYEKAIASGLQGKDLAECYLGLGSTF------------RTLGE---YRKA-- 46
Query: 271 VNVAKECLLAALKADPKAAHIWANLANAYYLTGDHRSSGKCLEKAAKLEPN 321
+ L +K P + A Y G + + L K +
Sbjct: 47 ----EAVLANGVKQFPNHQALRVFYAMVLYNLGRYEQGVELLLKIIAETSD 93
|
| >3k9i_A BH0479 protein; putative protein binding protein, structural genomics, joint for structural genomics, JCSG; 2.71A {Bacillus halodurans} Length = 117 | Back alignment and structure |
|---|
Score = 38.5 bits (90), Expect = 6e-04
Identities = 9/43 (20%), Positives = 16/43 (37%)
Query: 420 AKECLLAALKADPKAAHIWANLANAYYLTGDHRSSGKCLEKVL 462
A+ L +K P + A Y G + + L K++
Sbjct: 46 AEAVLANGVKQFPNHQALRVFYAMVLYNLGRYEQGVELLLKII 88
|
| >3sf4_A G-protein-signaling modulator 2; tetratricopeptide repeat, TPR, cell polarity, asymmetric CEL division, mitotic spindle orientation; 2.60A {Homo sapiens} Length = 406 | Back alignment and structure |
|---|
Score = 47.7 bits (114), Expect = 5e-06
Identities = 46/262 (17%), Positives = 84/262 (32%), Gaps = 36/262 (13%)
Query: 75 AHAHFLLGLMYQRLGQPLKAVSSYEKAEEILLRCE--ADIARPELLSLVQIHHAQ--CLL 130
A A LG + LG +A+ ++ +I AR L +L ++HA+
Sbjct: 87 AKASGNLGNTLKVLGNFDEAIVCCQRHLDISRELNDKVGEARA-LYNLGNVYHAKGKSFG 145
Query: 131 PESSGDNSLDKELEPEELEEILS------KLKESMQSDTRQAVVWNTLGLILLKSGRLQS 184
D E + L+ + L ++ Q + LG G +
Sbjct: 146 CPGPQDVGEFPEEVRDALQAAVDFYEENLSLVTALGDRAAQGRAFGNLGNTHYLLGNFRD 205
Query: 185 SISVLSSLLAV------DPNNCDCIGNLGIAYFQSGDMEQSAKCFQ---DLILKDQNHPA 235
++ L + NLG AY G+ E +++ ++ L + ++
Sbjct: 206 AVIAHEQRLLIAKEFGDKAAERRAYSNLGNAYIFLGEFETASEYYKKTLLLARQLKDRAV 265
Query: 236 ALINYAALLLCKYGSVLAGAGANTGEGACLDQASAVNVAKECLLAA--LKADPKAAHIWA 293
+ +L G+ D A++ + L A L
Sbjct: 266 EAQSCYSL-----GNTYTLLQ---------DYEKAIDYHLKHLAIAQELNDRIGEGRACW 311
Query: 294 NLANAYYLTGDHRSSGKCLEKA 315
+L NAY G+H + EK
Sbjct: 312 SLGNAYTALGNHDQAMHFAEKH 333
|
| >3sf4_A G-protein-signaling modulator 2; tetratricopeptide repeat, TPR, cell polarity, asymmetric CEL division, mitotic spindle orientation; 2.60A {Homo sapiens} Length = 406 | Back alignment and structure |
|---|
Score = 46.5 bits (111), Expect = 1e-05
Identities = 33/262 (12%), Positives = 63/262 (24%), Gaps = 70/262 (26%)
Query: 71 MPKNAHAHFLLGLMYQRLGQPLKAVSSYEKAEEILLRCEADIARPELLSLVQIHHAQCLL 130
M + L G + G VS +E A ++ ++
Sbjct: 5 MEASCLELALEGERLCKSGDCRAGVSFFEAAVQVGTEDLKTLSA---------------- 48
Query: 131 PESSGDNSLDKELEPEELEEILSKLKESMQSDTRQAVVWNTLGLILLKSGRLQSSISVLS 190
+++ LG ++
Sbjct: 49 -------------------------------------IYSQLGNAYFYLHDYAKALEYHH 71
Query: 191 SLLAV------DPNNCDCIGNLGIAYFQSGDMEQSAKCFQ---DLILKDQNHP--AALIN 239
L + GNLG G+ +++ C Q D+ + + A +
Sbjct: 72 HDLTLARTIGDQLGEAKASGNLGNTLKVLGNFDEAIVCCQRHLDISRELNDKVGEARALY 131
Query: 240 YAALLLCKYGSVLAGAGANTGEGACLDQASAVNVAKECLLAALK------ADPKAAHIWA 293
+ G G + A+ A + L +
Sbjct: 132 NLGNVYHAKGKSFGCPGPQDVGEFPEEVRDALQAAVDFYEENLSLVTALGDRAAQGRAFG 191
Query: 294 NLANAYYLTGDHRSSGKCLEKA 315
NL N +YL G+ R + E+
Sbjct: 192 NLGNTHYLLGNFRDAVIAHEQR 213
|
| >3ma5_A Tetratricopeptide repeat domain protein; NESG, structural genomics, PSI-2, protein structure initiative; 2.80A {Salinibacter ruber} PDB: 2kcl_A 2kcv_A Length = 100 | Back alignment and structure |
|---|
Score = 44.2 bits (105), Expect = 5e-06
Identities = 10/71 (14%), Positives = 22/71 (30%)
Query: 166 AVVWNTLGLILLKSGRLQSSISVLSSLLAVDPNNCDCIGNLGIAYFQSGDMEQSAKCFQD 225
L LK ++++ L+ DP+ +LG Y + + + +
Sbjct: 7 PFTRYALAQEHLKHDNASRALALFEELVETDPDYVGTYYHLGKLYERLDRTDDAIDTYAQ 66
Query: 226 LILKDQNHPAA 236
I +
Sbjct: 67 GIEVAREEGTQ 77
|
| >3ma5_A Tetratricopeptide repeat domain protein; NESG, structural genomics, PSI-2, protein structure initiative; 2.80A {Salinibacter ruber} PDB: 2kcl_A 2kcv_A Length = 100 | Back alignment and structure |
|---|
Score = 39.6 bits (93), Expect = 2e-04
Identities = 11/106 (10%), Positives = 29/106 (27%), Gaps = 23/106 (21%)
Query: 196 DPNNCDCIGNLGIAYFQSGDMEQSAKCFQDLILKDQNHPAALINYAALLLCKYGSVLAGA 255
DP + L + + + ++ F++L+ D ++ + L
Sbjct: 3 DPEDPFTRYALAQEHLKHDNASRALALFEELVETDPDYVGTYYHLGKLY----------- 51
Query: 256 GANTGEGACLDQASAVNVAKECLLAALKADPKA--AHIWANLANAY 299
D A + ++ + + L +A
Sbjct: 52 -ERLDR---TDD------AIDTYAQGIEVAREEGTQKDLSELQDAK 87
|
| >3ma5_A Tetratricopeptide repeat domain protein; NESG, structural genomics, PSI-2, protein structure initiative; 2.80A {Salinibacter ruber} PDB: 2kcl_A 2kcv_A Length = 100 | Back alignment and structure |
|---|
Score = 39.2 bits (92), Expect = 3e-04
Identities = 5/33 (15%), Positives = 15/33 (45%)
Query: 72 PKNAHAHFLLGLMYQRLGQPLKAVSSYEKAEEI 104
P++ + L + + +A++ +E+ E
Sbjct: 4 PEDPFTRYALAQEHLKHDNASRALALFEELVET 36
|
| >1na0_A Designed protein CTPR3; de novo protein; HET: IPT; 1.60A {Unidentified} SCOP: k.38.1.1 PDB: 2wqh_A 3kd7_A Length = 125 | Back alignment and structure |
|---|
Score = 42.8 bits (102), Expect = 3e-05
Identities = 39/138 (28%), Positives = 54/138 (39%), Gaps = 21/138 (15%)
Query: 166 AVVWNTLGLILLKSGRLQSSISVLSSLLAVDPNNCDCIGNLGIAYFQSGDMEQSAKCFQD 225
A W LG K G +I L +DPNN + NLG AY++ GD +++ + +Q
Sbjct: 9 AEAWYNLGNAYYKQGDYDEAIEYYQKALELDPNNAEAWYNLGNAYYKQGDYDEAIEYYQK 68
Query: 226 LILKDQNHPAALINYAALLLCKYGSVLAGAGANTGEGACLDQASAVNVAKECLLAALKAD 285
+ D N+ A N G+ G D+ A E AL+ D
Sbjct: 69 ALELDPNNAEAWYN--------LGNAYYKQGD-------YDE------AIEYYQKALELD 107
Query: 286 PKAAHIWANLANAYYLTG 303
P A NL NA G
Sbjct: 108 PNNAEAKQNLGNAKQKQG 125
|
| >1na0_A Designed protein CTPR3; de novo protein; HET: IPT; 1.60A {Unidentified} SCOP: k.38.1.1 PDB: 2wqh_A 3kd7_A Length = 125 | Back alignment and structure |
|---|
Score = 40.5 bits (96), Expect = 2e-04
Identities = 37/144 (25%), Positives = 57/144 (39%), Gaps = 24/144 (16%)
Query: 72 PKN-AHAHFLLGLMYQRLGQPLKAVSSYEKAEEILLRCEADIARPELLSLVQIHHAQCLL 130
P N A A + LG Y + G +A+ Y+KA E+ P A L
Sbjct: 5 PGNSAEAWYNLGNAYYKQGDYDEAIEYYQKALEL---------DPNN------AEAWYNL 49
Query: 131 PESSGDNSLDKELEPEELEEILSKLKESMQSDTRQAVVWNTLGLILLKSGRLQSSISVLS 190
G N+ + + +E + +++++ D A W LG K G +I
Sbjct: 50 ----G-NAY-YKQ--GDYDEAIEYYQKALELDPNNAEAWYNLGNAYYKQGDYDEAIEYYQ 101
Query: 191 SLLAVDPNNCDCIGNLGIAYFQSG 214
L +DPNN + NLG A + G
Sbjct: 102 KALELDPNNAEAKQNLGNAKQKQG 125
|
| >3ro2_A PINS homolog, G-protein-signaling modulator 2; TPR repeat, protein-protein interaction, protein-binding, PR binding; 2.30A {Mus musculus} Length = 338 | Back alignment and structure |
|---|
Score = 45.3 bits (108), Expect = 3e-05
Identities = 45/262 (17%), Positives = 83/262 (31%), Gaps = 36/262 (13%)
Query: 75 AHAHFLLGLMYQRLGQPLKAVSSYEKAEEILLRCE--ADIARPELLSLVQIHHAQ--CLL 130
A A LG + LG +A+ ++ +I AR L +L ++HA+
Sbjct: 83 AKASGNLGNTLKVLGNFDEAIVCCQRHLDISRELNDKVGEAR-ALYNLGNVYHAKGKSFG 141
Query: 131 PESSGDNSLDKELEPEELEEILS------KLKESMQSDTRQAVVWNTLGLILLKSGRLQS 184
D E L+ + L ++ Q + LG G +
Sbjct: 142 CPGPQDTGEFPEDVRNALQAAVDLYEENLSLVTALGDRAAQGRAFGNLGNTHYLLGNFRD 201
Query: 185 SISVLSSLLAV------DPNNCDCIGNLGIAYFQSGDMEQSAKCFQ---DLILKDQNHPA 235
++ L + NLG AY G+ E +++ ++ L + ++
Sbjct: 202 AVIAHEQRLLIAKEFGDKAAERRAYSNLGNAYIFLGEFETASEYYKKTLLLARQLKDRAV 261
Query: 236 ALINYAALLLCKYGSVLAGAGANTGEGACLDQASAVNVAKECLLAALKAD--PKAAHIWA 293
+ +L G+ D A++ + L A +
Sbjct: 262 EAQSCYSL-----GNTYTLLQ---------DYEKAIDYHLKHLAIAQELKDRIGEGRACW 307
Query: 294 NLANAYYLTGDHRSSGKCLEKA 315
+L NAY G+H + EK
Sbjct: 308 SLGNAYTALGNHDQAMHFAEKH 329
|
| >3ro2_A PINS homolog, G-protein-signaling modulator 2; TPR repeat, protein-protein interaction, protein-binding, PR binding; 2.30A {Mus musculus} Length = 338 | Back alignment and structure |
|---|
Score = 41.1 bits (97), Expect = 5e-04
Identities = 49/267 (18%), Positives = 76/267 (28%), Gaps = 42/267 (15%)
Query: 75 AHAHFLLGLMYQRLGQPLKAVSSYEKAEEILLRCEADIARPELLSLVQIHHAQCLLPESS 134
L G + G VS +E A ++ ++ L +
Sbjct: 5 CLELALEGERLCKSGDCRAGVSFFEAAVQVGTEDLKTLSA-IYSQLGNAYFYL------- 56
Query: 135 GDNSLDKELEPEELEEILSKLKESMQSDTRQAVVWNTLGLILLKSGRLQSSISVLSSLLA 194
D K L E L L ++ +A LG L G +I L
Sbjct: 57 HD--YAKAL--EYHHHDL-TLARTIGDQLGEAKASGNLGNTLKVLGNFDEAIVCCQRHLD 111
Query: 195 VD------PNNCDCIGNLGIAYFQSGDMEQSAKCFQDLILKDQNHPA---ALINY-AALL 244
+ + NLG Y G + A A+ Y L
Sbjct: 112 ISRELNDKVGEARALYNLGNVYHAKGKSFGCPGPQDTGEFPEDVRNALQAAVDLYEENLS 171
Query: 245 LCKYGSVLAGAGANTGEGACL-----------DQASAVNVAKECLLAALKADPKAAH--I 291
L G +G + AV ++ LL A + KAA
Sbjct: 172 LVT------ALGDRAAQGRAFGNLGNTHYLLGNFRDAVIAHEQRLLIAKEFGDKAAERRA 225
Query: 292 WANLANAYYLTGDHRSSGKCLEKAAKL 318
++NL NAY G+ ++ + +K L
Sbjct: 226 YSNLGNAYIFLGEFETASEYYKKTLLL 252
|
| >2vyi_A SGTA protein; chaperone, TPR repeat, phosphoprotein, tetratricopeptide repeat protein, HOST-virus interaction; 2.4A {Homo sapiens} SCOP: k.38.1.1 Length = 131 | Back alignment and structure |
|---|
Score = 41.8 bits (99), Expect = 5e-05
Identities = 21/146 (14%), Positives = 45/146 (30%), Gaps = 27/146 (18%)
Query: 196 DPNNCDCIGNLGIAYFQSGDMEQSAKCFQDLILKDQNHPAALINYAA--LLLCKYGSVLA 253
D + + G + + E + + I + + N AA L Y
Sbjct: 8 DSAEAERLKTEGNEQMKVENFEAAVHFYGKAIELNPANAVYFCNRAAAYSKLGNYAG--- 64
Query: 254 GAGANTGEGACLDQASAVNVAKECLLAALKADPKAAHIWANLANAYYLTGDHRSSGKCLE 313
A + A+ DP + + + A H + +
Sbjct: 65 --------------------AVQDCERAICIDPAYSKAYGRMGLALSSLNKHVEAVAYYK 104
Query: 314 KAAKLEPNC--MSTRYAVAVSRIKDA 337
KA +L+P+ + +A ++++A
Sbjct: 105 KALELDPDNETYKSNLKIAELKLREA 130
|
| >3sz7_A HSC70 cochaperone (SGT); TPR domain, GET4, GET5, GET3, MDY2, SSA1, SSE1, chaperone regulator; 1.72A {Aspergillus fumigatus} Length = 164 | Back alignment and structure |
|---|
Score = 42.0 bits (99), Expect = 8e-05
Identities = 26/148 (17%), Positives = 46/148 (31%), Gaps = 29/148 (19%)
Query: 205 NLGIAYFQSGDMEQSAKCFQDLILKDQNHPAALINYAA--LLLCKYGSVLAGAGANTGEG 262
+ G A + ++ + + +P L N AA ++ A
Sbjct: 16 SEGNAAMARKEYSKAIDLYTQALSIAPANPIYLSNRAAAYSASGQHEKAAEDA------- 68
Query: 263 ACLDQASAVNVAKECLLAALKADPKAAHIWANLANAYYLTGDHRSSGKCLEKAAKLEPN- 321
A DPK + W+ L A + D++ + + EK + E N
Sbjct: 69 ----------------ELATVVDPKYSKAWSRLGLARFDMADYKGAKEAYEKGIEAEGNG 112
Query: 322 ---CMSTRYAVAVSRIKDAERSQEPTEQ 346
M +I++A R EP
Sbjct: 113 GSDAMKRGLETTKRKIEEANRGAEPPAD 140
|
| >1elr_A TPR2A-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, protein binding, chaperone; 1.90A {Homo sapiens} SCOP: a.118.8.1 PDB: 3esk_A 3fwv_A Length = 131 | Back alignment and structure |
|---|
Score = 40.8 bits (96), Expect = 1e-04
Identities = 21/138 (15%), Positives = 44/138 (31%), Gaps = 19/138 (13%)
Query: 205 NLGIAYFQSGDMEQSAKCFQDLILKDQNHPAALINYAA--LLLCKYGSVLAGAGANTGEG 262
LG ++ D + + K + D + + N AA Y
Sbjct: 9 ELGNDAYKKKDFDTALKHYDKAKELDPTNMTYITNQAAVYFEKGDYNKCRE--------- 59
Query: 263 ACLDQASAVNVAKECLLAALKADPKAAHIWANLANAYYLTGDHRSSGKCLEKAAKLEPNC 322
A+ V +E + + A +A + N+Y+ ++ + K+
Sbjct: 60 ---LCEKAIEVGRENR----EDYRQIAKAYARIGNSYFKEEKYKDAIHFYNKSLAEHRTP 112
Query: 323 -MSTRYAVAVSRIKDAER 339
+ + A +K+ ER
Sbjct: 113 DVLKKCQQAEKILKEQER 130
|
| >2lni_A Stress-induced-phosphoprotein 1; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative, chaperone; NMR {Homo sapiens} Length = 133 | Back alignment and structure |
|---|
Score = 40.3 bits (95), Expect = 2e-04
Identities = 24/149 (16%), Positives = 46/149 (30%), Gaps = 30/149 (20%)
Query: 195 VDPNNCDCIGNLGIAYFQSGDMEQSAKCFQDLILKDQNHPAALINYAA--LLLCKYGSVL 252
++P+ + N G FQ GD Q+ K + + I ++ N AA L ++ L
Sbjct: 11 MNPDLALMVKNKGNECFQKGDYPQAMKHYTEAIKRNPKDAKLYSNRAACYTKLLEFQLAL 70
Query: 253 AGAGANTGEGACLDQASAVNVAKECLLAALKADPKAAHIWANLANAYYLTGDHRSSGKCL 312
++ +P + A A D+ +
Sbjct: 71 KDC-----------------------EECIQLEPTFIKGYTRKAAALEAMKDYTKAMDVY 107
Query: 313 EKAAKLEPNCMSTRYAVAVSRIKDAERSQ 341
+KA L+ + A + +Q
Sbjct: 108 QKALDLDSS-----CKEAADGYQRCMMAQ 131
|
| >1na3_A Designed protein CTPR2; de novo protein; HET: IPT; 1.55A {Unidentified} SCOP: k.38.1.1 PDB: 2avp_A Length = 91 | Back alignment and structure |
|---|
Score = 38.1 bits (90), Expect = 4e-04
Identities = 24/74 (32%), Positives = 36/74 (48%)
Query: 166 AVVWNTLGLILLKSGRLQSSISVLSSLLAVDPNNCDCIGNLGIAYFQSGDMEQSAKCFQD 225
A W LG K G +I L +DPNN + NLG AY++ GD +++ + +Q
Sbjct: 9 AEAWYNLGNAYYKQGDYDEAIEYYQKALELDPNNAEAWYNLGNAYYKQGDYDEAIEYYQK 68
Query: 226 LILKDQNHPAALIN 239
+ D N+ A N
Sbjct: 69 ALELDPNNAEAKQN 82
|
| >3ly7_A Transcriptional activator CADC; alpha/beta domain, alpha domain, DNA-binding, transcription regulation, transmembrane; 1.80A {Escherichia coli} PDB: 3lya_A 3ly8_A 3ly9_A Length = 372 | Back alignment and structure |
|---|
Score = 41.2 bits (96), Expect = 6e-04
Identities = 20/162 (12%), Positives = 46/162 (28%), Gaps = 16/162 (9%)
Query: 168 VWNTLGLILLKSGRLQSSISVLSSLLAVDPNNCDCIGNL--GIAYFQSGDMEQSAK---C 222
+ N L L K+ + +L + P+ + N Y GD + +
Sbjct: 162 IQNDLLESLSKALNQPWPQRMQETLQKILPHRGALLTNFYQAHDYLLHGDDKSLNRASEL 221
Query: 223 FQDLILKDQNHPAALINYAALLLCKYGSVLAGAGANTGEGACLDQASAVNVAKECLLAAL 282
+++ A A + + ++ +D L
Sbjct: 222 LGEIVQSSPEFTYARAEKALVDIVRHSQHPLDEKQLAALNTEIDNI-----------VTL 270
Query: 283 KADPKAAHIWANLANAYYLTGDHRSSGKCLEKAAKLEPNCMS 324
+ I+ A + + G S + + LE + ++
Sbjct: 271 PELNNLSIIYQIKAVSALVKGKTDESYQAINTGIDLEMSWLN 312
|
| >3ly7_A Transcriptional activator CADC; alpha/beta domain, alpha domain, DNA-binding, transcription regulation, transmembrane; 1.80A {Escherichia coli} PDB: 3lya_A 3ly8_A 3ly9_A Length = 372 | Back alignment and structure |
|---|
Score = 40.5 bits (94), Expect = 8e-04
Identities = 16/178 (8%), Positives = 48/178 (26%), Gaps = 19/178 (10%)
Query: 67 VARKMPKN--AHAHFLLGLMYQRLGQP---LKAVSSYEKAEEILLRCEADIARPELLSLV 121
+ + +P +F Y G +A + + +
Sbjct: 186 LQKILPHRGALLTNFYQAHDYLLHGDDKSLNRASELLGEIVQS----SPEFTY------- 234
Query: 122 QIHHAQCLLPESSGDNSLDKELEPEELEEILSKLKESMQSDTRQAVVWNTLGLILLKSGR 181
+ L+ E + L + + + ++++ + L G+
Sbjct: 235 -ARAEKALVDIVRHSQHPLDEKQLAALNTEIDNIVT-LPELNNLSIIYQIKAVSALVKGK 292
Query: 182 LQSSISVLSSLLAVDPNNCDCIGNLGIAYFQSGDMEQSAKCFQDLILKDQNHPAALIN 239
S +++ + ++ + + + LG Y G ++A +
Sbjct: 293 TDESYQAINTGIDLEMSWLNYV-LLGKVYEMKGMNREAADAYLTAFNLRPGANTLYWI 349
|
| >2kc7_A BFR218_protein; tetratricopeptide repeat, all-alpha, GFT-structural genomics, PSI-2, protein structure initiative; NMR {Bacteroides fragilis} Length = 99 | Back alignment and structure |
|---|
Score = 38.1 bits (89), Expect = 6e-04
Identities = 15/62 (24%), Positives = 30/62 (48%), Gaps = 1/62 (1%)
Query: 176 LLKSGRLQSSISVLSSLLAVDPNNCDCI-GNLGIAYFQSGDMEQSAKCFQDLILKDQNHP 234
L+ G +++++ L L +P D +G AY + GD +++ +Q I + + P
Sbjct: 10 LINQGDIENALQALEEFLQTEPVGKDEAYYLMGNAYRKLGDWQKALNNYQSAIELNPDSP 69
Query: 235 AA 236
A
Sbjct: 70 AL 71
|
Structure Templates Detected by HHsearch
Original result of HHsearch against PDB70 database
| ID | Alignment Graph | Length |
Definition |
Probability |
| Query | 470 | |||
| 1w3b_A | 388 | UDP-N-acetylglucosamine--peptide N-acetylglucosami | 100.0 | |
| 1w3b_A | 388 | UDP-N-acetylglucosamine--peptide N-acetylglucosami | 100.0 | |
| 2gw1_A | 514 | Mitochondrial precursor proteins import receptor; | 100.0 | |
| 3fp2_A | 537 | TPR repeat-containing protein YHR117W; TOM71, mito | 100.0 | |
| 2xpi_A | 597 | Anaphase-promoting complex subunit CUT9; cell cycl | 100.0 | |
| 2y4t_A | 450 | DNAJ homolog subfamily C member 3; chaperone, endo | 100.0 | |
| 3ieg_A | 359 | DNAJ homolog subfamily C member 3; TPR motif, chap | 100.0 | |
| 3ieg_A | 359 | DNAJ homolog subfamily C member 3; TPR motif, chap | 100.0 | |
| 2y4t_A | 450 | DNAJ homolog subfamily C member 3; chaperone, endo | 100.0 | |
| 2xpi_A | 597 | Anaphase-promoting complex subunit CUT9; cell cycl | 100.0 | |
| 4g1t_A | 472 | Interferon-induced protein with tetratricopeptide | 100.0 | |
| 3hym_B | 330 | Cell division cycle protein 16 homolog; APC, anaph | 100.0 | |
| 2gw1_A | 514 | Mitochondrial precursor proteins import receptor; | 100.0 | |
| 3fp2_A | 537 | TPR repeat-containing protein YHR117W; TOM71, mito | 100.0 | |
| 1fch_A | 368 | Peroxisomal targeting signal 1 receptor; protein-p | 100.0 | |
| 3hym_B | 330 | Cell division cycle protein 16 homolog; APC, anaph | 100.0 | |
| 4g1t_A | 472 | Interferon-induced protein with tetratricopeptide | 100.0 | |
| 4eqf_A | 365 | PEX5-related protein; accessory protein, tetratric | 100.0 | |
| 2h6f_A | 382 | Protein farnesyltransferase/geranylgeranyltransfer | 99.98 | |
| 3cv0_A | 327 | Peroxisome targeting signal 1 receptor PEX5; TPR m | 99.98 | |
| 4eqf_A | 365 | PEX5-related protein; accessory protein, tetratric | 99.97 | |
| 1fch_A | 368 | Peroxisomal targeting signal 1 receptor; protein-p | 99.97 | |
| 2xm6_A | 490 | Protein corresponding to locus C5321 from CFT073 s | 99.97 | |
| 3cv0_A | 327 | Peroxisome targeting signal 1 receptor PEX5; TPR m | 99.97 | |
| 2h6f_A | 382 | Protein farnesyltransferase/geranylgeranyltransfer | 99.97 | |
| 2pl2_A | 217 | Hypothetical conserved protein TTC0263; TPR, prote | 99.97 | |
| 2pl2_A | 217 | Hypothetical conserved protein TTC0263; TPR, prote | 99.96 | |
| 2xm6_A | 490 | Protein corresponding to locus C5321 from CFT073 s | 99.96 | |
| 2ooe_A | 530 | Cleavage stimulation factor 77 kDa subunit; HAT do | 99.96 | |
| 3u4t_A | 272 | TPR repeat-containing protein; structural genomics | 99.96 | |
| 3uq3_A | 258 | Heat shock protein STI1; HSP90, peptide binding, c | 99.96 | |
| 3u4t_A | 272 | TPR repeat-containing protein; structural genomics | 99.96 | |
| 3sf4_A | 406 | G-protein-signaling modulator 2; tetratricopeptide | 99.95 | |
| 3mkr_A | 291 | Coatomer subunit epsilon; tetratricopeptide repeat | 99.95 | |
| 3uq3_A | 258 | Heat shock protein STI1; HSP90, peptide binding, c | 99.95 | |
| 1xnf_A | 275 | Lipoprotein NLPI; TPR, tetratricopeptide, structur | 99.95 | |
| 3mkr_A | 291 | Coatomer subunit epsilon; tetratricopeptide repeat | 99.95 | |
| 3e4b_A | 452 | ALGK; tetratricopeptide repeat, superhelix, algina | 99.95 | |
| 4a1s_A | 411 | PINS, partner of inscuteable; cell cycle, LGN, mit | 99.94 | |
| 1ouv_A | 273 | Conserved hypothetical secreted protein; TPR repea | 99.94 | |
| 3sf4_A | 406 | G-protein-signaling modulator 2; tetratricopeptide | 99.94 | |
| 4abn_A | 474 | Tetratricopeptide repeat protein 5; P53 cofactor, | 99.94 | |
| 3ro2_A | 338 | PINS homolog, G-protein-signaling modulator 2; TPR | 99.94 | |
| 2q7f_A | 243 | YRRB protein; TPR, protein binding; 2.49A {Bacillu | 99.94 | |
| 3vtx_A | 184 | MAMA; tetratricopeptide repeats (TPR) containing p | 99.94 | |
| 2ooe_A | 530 | Cleavage stimulation factor 77 kDa subunit; HAT do | 99.94 | |
| 4a1s_A | 411 | PINS, partner of inscuteable; cell cycle, LGN, mit | 99.94 | |
| 2q7f_A | 243 | YRRB protein; TPR, protein binding; 2.49A {Bacillu | 99.94 | |
| 1xnf_A | 275 | Lipoprotein NLPI; TPR, tetratricopeptide, structur | 99.93 | |
| 3vtx_A | 184 | MAMA; tetratricopeptide repeats (TPR) containing p | 99.93 | |
| 2ho1_A | 252 | Type 4 fimbrial biogenesis protein PILF; type IV p | 99.93 | |
| 2ho1_A | 252 | Type 4 fimbrial biogenesis protein PILF; type IV p | 99.93 | |
| 3e4b_A | 452 | ALGK; tetratricopeptide repeat, superhelix, algina | 99.93 | |
| 1ouv_A | 273 | Conserved hypothetical secreted protein; TPR repea | 99.93 | |
| 2vq2_A | 225 | PILW, putative fimbrial biogenesis and twitching m | 99.93 | |
| 2vq2_A | 225 | PILW, putative fimbrial biogenesis and twitching m | 99.93 | |
| 3ro2_A | 338 | PINS homolog, G-protein-signaling modulator 2; TPR | 99.93 | |
| 4abn_A | 474 | Tetratricopeptide repeat protein 5; P53 cofactor, | 99.93 | |
| 2ond_A | 308 | Cleavage stimulation factor 77 kDa subunit; HAT do | 99.92 | |
| 4i17_A | 228 | Hypothetical protein; TPR repeats protein, structu | 99.92 | |
| 3ulq_A | 383 | Response regulator aspartate phosphatase F; tetrat | 99.92 | |
| 4gyw_A | 723 | UDP-N-acetylglucosamine--peptide N- acetylglucosam | 99.92 | |
| 4i17_A | 228 | Hypothetical protein; TPR repeats protein, structu | 99.92 | |
| 2ond_A | 308 | Cleavage stimulation factor 77 kDa subunit; HAT do | 99.92 | |
| 4gyw_A | 723 | UDP-N-acetylglucosamine--peptide N- acetylglucosam | 99.91 | |
| 3ulq_A | 383 | Response regulator aspartate phosphatase F; tetrat | 99.91 | |
| 3nf1_A | 311 | KLC 1, kinesin light chain 1; TPR, structural geno | 99.89 | |
| 3qky_A | 261 | Outer membrane assembly lipoprotein YFIO; membrane | 99.89 | |
| 3qky_A | 261 | Outer membrane assembly lipoprotein YFIO; membrane | 99.89 | |
| 3nf1_A | 311 | KLC 1, kinesin light chain 1; TPR, structural geno | 99.89 | |
| 3q15_A | 378 | PSP28, response regulator aspartate phosphatase H; | 99.89 | |
| 4ga2_A | 150 | E3 SUMO-protein ligase ranbp2; TPR motif, nuclear | 99.88 | |
| 2pzi_A | 681 | Probable serine/threonine-protein kinase PKNG; ATP | 99.88 | |
| 1qqe_A | 292 | Vesicular transport protein SEC17; helix-turn-heli | 99.88 | |
| 1xi4_A | 1630 | Clathrin heavy chain; alpha-ZIG-ZAG, beta-propelle | 99.88 | |
| 3dra_A | 306 | Protein farnesyltransferase/geranylgeranyltransfer | 99.88 | |
| 3dra_A | 306 | Protein farnesyltransferase/geranylgeranyltransfer | 99.88 | |
| 3urz_A | 208 | Uncharacterized protein; tetratricopeptide repeats | 99.87 | |
| 1hz4_A | 373 | MALT regulatory protein; two-helix bundles, helix | 99.87 | |
| 1hz4_A | 373 | MALT regulatory protein; two-helix bundles, helix | 99.87 | |
| 2pzi_A | 681 | Probable serine/threonine-protein kinase PKNG; ATP | 99.87 | |
| 3edt_B | 283 | KLC 2, kinesin light chain 2; superhelical, struct | 99.87 | |
| 3q15_A | 378 | PSP28, response regulator aspartate phosphatase H; | 99.87 | |
| 1qqe_A | 292 | Vesicular transport protein SEC17; helix-turn-heli | 99.87 | |
| 3urz_A | 208 | Uncharacterized protein; tetratricopeptide repeats | 99.86 | |
| 1b89_A | 449 | Protein (clathrin heavy chain); triskelion, coated | 99.86 | |
| 1xi4_A | 1630 | Clathrin heavy chain; alpha-ZIG-ZAG, beta-propelle | 99.86 | |
| 2yhc_A | 225 | BAMD, UPF0169 lipoprotein YFIO; essential BAM comp | 99.85 | |
| 4ga2_A | 150 | E3 SUMO-protein ligase ranbp2; TPR motif, nuclear | 99.85 | |
| 3as5_A | 186 | MAMA; tetratricopeptide repeats (TPR) containing p | 99.85 | |
| 2yhc_A | 225 | BAMD, UPF0169 lipoprotein YFIO; essential BAM comp | 99.85 | |
| 3as5_A | 186 | MAMA; tetratricopeptide repeats (TPR) containing p | 99.84 | |
| 3edt_B | 283 | KLC 2, kinesin light chain 2; superhelical, struct | 99.84 | |
| 4gco_A | 126 | Protein STI-1; structural genomics, PSI-biology, m | 99.84 | |
| 3dss_A | 331 | Geranylgeranyl transferase type-2 subunit alpha; p | 99.83 | |
| 2r5s_A | 176 | Uncharacterized protein VP0806; APC090868.1, vibri | 99.82 | |
| 1b89_A | 449 | Protein (clathrin heavy chain); triskelion, coated | 99.82 | |
| 2r5s_A | 176 | Uncharacterized protein VP0806; APC090868.1, vibri | 99.81 | |
| 3dss_A | 331 | Geranylgeranyl transferase type-2 subunit alpha; p | 99.81 | |
| 2vsy_A | 568 | XCC0866; transferase, glycosyl transferase, GT-B, | 99.81 | |
| 4gco_A | 126 | Protein STI-1; structural genomics, PSI-biology, m | 99.81 | |
| 2ifu_A | 307 | Gamma-SNAP; membrane fusion, snare complex disasse | 99.8 | |
| 3qou_A | 287 | Protein YBBN; thioredoxin-like fold, tetratricopep | 99.8 | |
| 3gyz_A | 151 | Chaperone protein IPGC; asymmetric homodimer, tetr | 99.8 | |
| 3gyz_A | 151 | Chaperone protein IPGC; asymmetric homodimer, tetr | 99.8 | |
| 4e6h_A | 679 | MRNA 3'-END-processing protein RNA14; HAT domain, | 99.8 | |
| 2ifu_A | 307 | Gamma-SNAP; membrane fusion, snare complex disasse | 99.79 | |
| 3q7a_A | 349 | Farnesyltransferase alpha subunit; protein prenylt | 99.79 | |
| 3qou_A | 287 | Protein YBBN; thioredoxin-like fold, tetratricopep | 99.78 | |
| 3q7a_A | 349 | Farnesyltransferase alpha subunit; protein prenylt | 99.78 | |
| 1p5q_A | 336 | FKBP52, FK506-binding protein 4; isomerase; 2.80A | 99.78 | |
| 2vsy_A | 568 | XCC0866; transferase, glycosyl transferase, GT-B, | 99.77 | |
| 2vgx_A | 148 | Chaperone SYCD; alternative dimer assembly, tetrat | 99.77 | |
| 3rjv_A | 212 | Putative SEL1 repeat protein; alpha-alpha superhel | 99.75 | |
| 1p5q_A | 336 | FKBP52, FK506-binding protein 4; isomerase; 2.80A | 99.75 | |
| 4f3v_A | 282 | ESX-1 secretion system protein ECCA1; tetratricope | 99.75 | |
| 2vgx_A | 148 | Chaperone SYCD; alternative dimer assembly, tetrat | 99.75 | |
| 2xcb_A | 142 | PCRH, regulatory protein PCRH; protein transport, | 99.74 | |
| 2fo7_A | 136 | Synthetic consensus TPR protein; tetratricopeptide | 99.74 | |
| 2c2l_A | 281 | CHIP, carboxy terminus of HSP70-interacting protei | 99.74 | |
| 4f3v_A | 282 | ESX-1 secretion system protein ECCA1; tetratricope | 99.73 | |
| 3rjv_A | 212 | Putative SEL1 repeat protein; alpha-alpha superhel | 99.73 | |
| 4e6h_A | 679 | MRNA 3'-END-processing protein RNA14; HAT domain, | 99.72 | |
| 2xcb_A | 142 | PCRH, regulatory protein PCRH; protein transport, | 99.71 | |
| 1hh8_A | 213 | P67PHOX, NCF-2, neutrophil cytosol factor 2; cell | 99.71 | |
| 2c2l_A | 281 | CHIP, carboxy terminus of HSP70-interacting protei | 99.71 | |
| 3upv_A | 126 | Heat shock protein STI1; TPR-fold, adaptor protein | 99.7 | |
| 2e2e_A | 177 | Formate-dependent nitrite reductase complex NRFG; | 99.7 | |
| 4gcn_A | 127 | Protein STI-1; structural genomics, PSI-biology, m | 99.7 | |
| 3mv2_B | 310 | Coatomer subunit epsilon; vesicular membrane coat | 99.68 | |
| 1dce_A | 567 | Protein (RAB geranylgeranyltransferase alpha subun | 99.68 | |
| 2e2e_A | 177 | Formate-dependent nitrite reductase complex NRFG; | 99.68 | |
| 2fbn_A | 198 | 70 kDa peptidylprolyl isomerase, putative; sulfur | 99.68 | |
| 1a17_A | 166 | Serine/threonine protein phosphatase 5; hydrolase, | 99.68 | |
| 2vyi_A | 131 | SGTA protein; chaperone, TPR repeat, phosphoprotei | 99.67 | |
| 2fo7_A | 136 | Synthetic consensus TPR protein; tetratricopeptide | 99.67 | |
| 2lni_A | 133 | Stress-induced-phosphoprotein 1; structural genomi | 99.67 | |
| 2qfc_A | 293 | PLCR protein; TPR, HTH, transcription regulation; | 99.67 | |
| 3sz7_A | 164 | HSC70 cochaperone (SGT); TPR domain, GET4, GET5, G | 99.66 | |
| 1dce_A | 567 | Protein (RAB geranylgeranyltransferase alpha subun | 99.66 | |
| 3sz7_A | 164 | HSC70 cochaperone (SGT); TPR domain, GET4, GET5, G | 99.65 | |
| 3upv_A | 126 | Heat shock protein STI1; TPR-fold, adaptor protein | 99.65 | |
| 1kt0_A | 457 | FKBP51, 51 kDa FK506-binding protein; FKBP-like pp | 99.65 | |
| 1hh8_A | 213 | P67PHOX, NCF-2, neutrophil cytosol factor 2; cell | 99.64 | |
| 1kt0_A | 457 | FKBP51, 51 kDa FK506-binding protein; FKBP-like pp | 99.64 | |
| 2qfc_A | 293 | PLCR protein; TPR, HTH, transcription regulation; | 99.63 | |
| 1na0_A | 125 | Designed protein CTPR3; de novo protein; HET: IPT; | 99.62 | |
| 3u3w_A | 293 | Transcriptional activator PLCR protein; ternary co | 99.62 | |
| 3q49_B | 137 | STIP1 homology and U box-containing protein 1; E3 | 99.62 | |
| 3u3w_A | 293 | Transcriptional activator PLCR protein; ternary co | 99.62 | |
| 1a17_A | 166 | Serine/threonine protein phosphatase 5; hydrolase, | 99.61 | |
| 2hr2_A | 159 | Hypothetical protein; alpha-alpha superhelix fold, | 99.61 | |
| 1hxi_A | 121 | PEX5, peroxisome targeting signal 1 receptor PEX5; | 99.6 | |
| 2hr2_A | 159 | Hypothetical protein; alpha-alpha superhelix fold, | 99.6 | |
| 1hxi_A | 121 | PEX5, peroxisome targeting signal 1 receptor PEX5; | 99.6 | |
| 4gcn_A | 127 | Protein STI-1; structural genomics, PSI-biology, m | 99.6 | |
| 3mv2_B | 310 | Coatomer subunit epsilon; vesicular membrane coat | 99.59 | |
| 1elw_A | 118 | TPR1-domain of HOP; HOP, TPR-domain, peptide-compl | 99.59 | |
| 3rkv_A | 162 | Putative peptidylprolyl isomerase; structural geno | 99.59 | |
| 2fbn_A | 198 | 70 kDa peptidylprolyl isomerase, putative; sulfur | 99.59 | |
| 3gw4_A | 203 | Uncharacterized protein; structural genomics, PSI- | 99.58 | |
| 2vyi_A | 131 | SGTA protein; chaperone, TPR repeat, phosphoprotei | 99.58 | |
| 2dba_A | 148 | Smooth muscle cell associated protein-1, isoform 2 | 99.57 | |
| 1wao_1 | 477 | Serine/threonine protein phosphatase 5; hydrolase, | 99.57 | |
| 2lni_A | 133 | Stress-induced-phosphoprotein 1; structural genomi | 99.57 | |
| 3q49_B | 137 | STIP1 homology and U box-containing protein 1; E3 | 99.57 | |
| 2if4_A | 338 | ATFKBP42; FKBP-like, alpha-beta, TPR-like, alpha, | 99.56 | |
| 1wao_1 | 477 | Serine/threonine protein phosphatase 5; hydrolase, | 99.56 | |
| 4b4t_Q | 434 | 26S proteasome regulatory subunit RPN6; hydrolase, | 99.55 | |
| 2xev_A | 129 | YBGF; tetratricopeptide, alpha-helical, metal bind | 99.55 | |
| 2kck_A | 112 | TPR repeat; tetratricopeptide repeat, structural g | 99.55 | |
| 2kck_A | 112 | TPR repeat; tetratricopeptide repeat, structural g | 99.54 | |
| 1zu2_A | 158 | Mitochondrial import receptor subunit TOM20-3; TPR | 99.54 | |
| 1elw_A | 118 | TPR1-domain of HOP; HOP, TPR-domain, peptide-compl | 99.54 | |
| 2if4_A | 338 | ATFKBP42; FKBP-like, alpha-beta, TPR-like, alpha, | 99.54 | |
| 1zu2_A | 158 | Mitochondrial import receptor subunit TOM20-3; TPR | 99.54 | |
| 3rkv_A | 162 | Putative peptidylprolyl isomerase; structural geno | 99.53 | |
| 1na0_A | 125 | Designed protein CTPR3; de novo protein; HET: IPT; | 99.53 | |
| 1elr_A | 131 | TPR2A-domain of HOP; HOP, TPR-domain, peptide-comp | 99.53 | |
| 4b4t_Q | 434 | 26S proteasome regulatory subunit RPN6; hydrolase, | 99.51 | |
| 2dba_A | 148 | Smooth muscle cell associated protein-1, isoform 2 | 99.51 | |
| 3k9i_A | 117 | BH0479 protein; putative protein binding protein, | 99.51 | |
| 3gw4_A | 203 | Uncharacterized protein; structural genomics, PSI- | 99.5 | |
| 1ihg_A | 370 | Cyclophilin 40; ppiase immunophilin tetratricopept | 99.5 | |
| 3k9i_A | 117 | BH0479 protein; putative protein binding protein, | 99.49 | |
| 2xev_A | 129 | YBGF; tetratricopeptide, alpha-helical, metal bind | 99.49 | |
| 1ihg_A | 370 | Cyclophilin 40; ppiase immunophilin tetratricopept | 99.49 | |
| 2uy1_A | 493 | Cleavage stimulation factor 77; RNA-binding protei | 99.48 | |
| 3ro3_A | 164 | PINS homolog, G-protein-signaling modulator 2; asy | 99.44 | |
| 1elr_A | 131 | TPR2A-domain of HOP; HOP, TPR-domain, peptide-comp | 99.43 | |
| 2uy1_A | 493 | Cleavage stimulation factor 77; RNA-binding protei | 99.42 | |
| 3ro3_A | 164 | PINS homolog, G-protein-signaling modulator 2; asy | 99.38 | |
| 2kat_A | 115 | Uncharacterized protein; NESG, structure, structur | 99.3 | |
| 2kat_A | 115 | Uncharacterized protein; NESG, structure, structur | 99.27 | |
| 2l6j_A | 111 | TPR repeat-containing protein associated with HSP; | 99.26 | |
| 2l6j_A | 111 | TPR repeat-containing protein associated with HSP; | 99.26 | |
| 1na3_A | 91 | Designed protein CTPR2; de novo protein; HET: IPT; | 99.25 | |
| 1na3_A | 91 | Designed protein CTPR2; de novo protein; HET: IPT; | 99.22 | |
| 3ma5_A | 100 | Tetratricopeptide repeat domain protein; NESG, str | 99.2 | |
| 3u64_A | 301 | Protein TP_0956; tetratrico peptide repeat, protei | 99.14 | |
| 1klx_A | 138 | Cysteine rich protein B; structural genomics, heli | 99.12 | |
| 2kc7_A | 99 | BFR218_protein; tetratricopeptide repeat, all-alph | 99.11 | |
| 3ma5_A | 100 | Tetratricopeptide repeat domain protein; NESG, str | 99.11 | |
| 2kc7_A | 99 | BFR218_protein; tetratricopeptide repeat, all-alph | 99.08 | |
| 3ly7_A | 372 | Transcriptional activator CADC; alpha/beta domain, | 99.07 | |
| 1klx_A | 138 | Cysteine rich protein B; structural genomics, heli | 99.03 | |
| 3ly7_A | 372 | Transcriptional activator CADC; alpha/beta domain, | 99.02 | |
| 3n71_A | 490 | Histone lysine methyltransferase SMYD1; heart deve | 99.0 | |
| 3u64_A | 301 | Protein TP_0956; tetratrico peptide repeat, protei | 98.99 | |
| 3bee_A | 93 | Putative YFRE protein; putaive YFRE protein, struc | 98.97 | |
| 1pc2_A | 152 | Mitochondria fission protein; unknown function; NM | 98.96 | |
| 3n71_A | 490 | Histone lysine methyltransferase SMYD1; heart deve | 98.93 | |
| 3bee_A | 93 | Putative YFRE protein; putaive YFRE protein, struc | 98.78 | |
| 2v5f_A | 104 | Prolyl 4-hydroxylase subunit alpha-1; endoplasmic | 98.73 | |
| 1pc2_A | 152 | Mitochondria fission protein; unknown function; NM | 98.71 | |
| 3qww_A | 433 | SET and MYND domain-containing protein 2; methyltr | 98.64 | |
| 4g26_A | 501 | Pentatricopeptide repeat-containing protein AT2G3 | 98.51 | |
| 4g26_A | 501 | Pentatricopeptide repeat-containing protein AT2G3 | 98.48 | |
| 3qwp_A | 429 | SET and MYND domain-containing protein 3; SMYD3,SE | 98.47 | |
| 2v5f_A | 104 | Prolyl 4-hydroxylase subunit alpha-1; endoplasmic | 98.47 | |
| 3qww_A | 433 | SET and MYND domain-containing protein 2; methyltr | 98.43 | |
| 3qwp_A | 429 | SET and MYND domain-containing protein 3; SMYD3,SE | 98.42 | |
| 1nzn_A | 126 | CGI-135 protein, fission protein FIS1P; TPR, unkno | 98.4 | |
| 4h7y_A | 161 | Dual specificity protein kinase TTK; mitotic check | 98.26 | |
| 4h7y_A | 161 | Dual specificity protein kinase TTK; mitotic check | 98.13 | |
| 1nzn_A | 126 | CGI-135 protein, fission protein FIS1P; TPR, unkno | 98.13 | |
| 1y8m_A | 144 | FIS1; mitochondria, unknown function; NMR {Sacchar | 97.85 | |
| 3o48_A | 134 | Mitochondria fission 1 protein; tetratricopeptide | 97.84 | |
| 3ffl_A | 167 | Anaphase-promoting complex subunit 7; tetratricope | 97.82 | |
| 3ffl_A | 167 | Anaphase-promoting complex subunit 7; tetratricope | 97.71 | |
| 3txn_A | 394 | 26S proteasome regulatory complex subunit P42B; PC | 97.31 | |
| 3o48_A | 134 | Mitochondria fission 1 protein; tetratricopeptide | 97.2 | |
| 1y8m_A | 144 | FIS1; mitochondria, unknown function; NMR {Sacchar | 97.13 | |
| 3kae_A | 242 | CDC27, possible protein of nuclear scaffold; tetra | 96.97 | |
| 3txn_A | 394 | 26S proteasome regulatory complex subunit P42B; PC | 96.96 | |
| 1zbp_A | 273 | Hypothetical protein VPA1032; alpha-beta protein, | 96.71 | |
| 2wpv_A | 312 | GET4, UPF0363 protein YOR164C; golgi-ER traffickin | 96.52 | |
| 1qsa_A | 618 | Protein (soluble lytic transglycosylase SLT70); al | 96.48 | |
| 4gns_B | 754 | Protein CSD3, chitin biosynthesis protein CHS6; FN | 96.47 | |
| 1zbp_A | 273 | Hypothetical protein VPA1032; alpha-beta protein, | 96.43 | |
| 4b4t_P | 445 | 26S proteasome regulatory subunit RPN5; hydrolase, | 96.4 | |
| 4gns_B | 754 | Protein CSD3, chitin biosynthesis protein CHS6; FN | 96.37 | |
| 3mkq_A | 814 | Coatomer beta'-subunit; beta-propeller, alpha-sole | 96.31 | |
| 3kae_A | 242 | CDC27, possible protein of nuclear scaffold; tetra | 96.22 | |
| 3mkq_B | 177 | Coatomer subunit alpha; beta-propeller, alpha-sole | 96.03 | |
| 1ya0_A | 497 | SMG-7 transcript variant 2; alpha-helical repeat, | 96.01 | |
| 3mkq_B | 177 | Coatomer subunit alpha; beta-propeller, alpha-sole | 95.91 | |
| 1qsa_A | 618 | Protein (soluble lytic transglycosylase SLT70); al | 95.89 | |
| 2ff4_A | 388 | Probable regulatory protein EMBR; winged-helix, te | 95.48 | |
| 4b4t_R | 429 | RPN7, 26S proteasome regulatory subunit RPN7; hydr | 95.33 | |
| 2ff4_A | 388 | Probable regulatory protein EMBR; winged-helix, te | 95.03 | |
| 4fhn_B | 1139 | Nucleoporin NUP120; protein complex,structural pro | 95.0 | |
| 4b4t_P | 445 | 26S proteasome regulatory subunit RPN5; hydrolase, | 94.9 | |
| 3mkq_A | 814 | Coatomer beta'-subunit; beta-propeller, alpha-sole | 94.89 | |
| 3spa_A | 1134 | Mtrpol, DNA-directed RNA polymerase, mitochondrial | 94.88 | |
| 1ya0_A | 497 | SMG-7 transcript variant 2; alpha-helical repeat, | 94.34 | |
| 3lvg_A | 624 | Clathrin heavy chain 1; SELF assembly, coated PIT, | 94.21 | |
| 3spa_A | 1134 | Mtrpol, DNA-directed RNA polymerase, mitochondrial | 94.08 | |
| 4fhn_B | 1139 | Nucleoporin NUP120; protein complex,structural pro | 93.95 | |
| 3lpz_A | 336 | GET4 (YOR164C homolog); protein targeting, tail-an | 93.94 | |
| 4b4t_S | 523 | RPN3, 26S proteasome regulatory subunit RPN3; hydr | 93.64 | |
| 4b4t_R | 429 | RPN7, 26S proteasome regulatory subunit RPN7; hydr | 93.01 | |
| 4b4t_S | 523 | RPN3, 26S proteasome regulatory subunit RPN3; hydr | 92.81 | |
| 4ady_A | 963 | RPN2, 26S proteasome regulatory subunit RPN2; prot | 89.81 | |
| 2wpv_A | 312 | GET4, UPF0363 protein YOR164C; golgi-ER traffickin | 88.81 | |
| 1wy6_A | 172 | Hypothetical protein ST1625; helical repeat protei | 88.71 | |
| 3lvg_A | 624 | Clathrin heavy chain 1; SELF assembly, coated PIT, | 84.91 | |
| 4ady_A | 963 | RPN2, 26S proteasome regulatory subunit RPN2; prot | 84.7 | |
| 4gq2_M | 950 | Nucleoporin NUP120; beta propeller alpha helical, | 82.98 |
| >1w3b_A UDP-N-acetylglucosamine--peptide N-acetylglucosaminyltransferase 110; OGT, glcnac, nucleoporin, O-linked glycosylation, TPR repeat, protein binding; 2.85A {Homo sapiens} SCOP: a.118.8.1 | Back alignment and structure |
|---|
Probab=100.00 E-value=3.2e-44 Score=331.57 Aligned_cols=364 Identities=19% Similarity=0.169 Sum_probs=302.2
Q ss_pred hhhhhhhhhhhHHHHHHHHHHHHhcCCCCcchhhhcccchhhhhcChhhHHHHHHHHHHhCCCChhHHHHHHHHHHHhCC
Q 012143 11 EGKKINKLGKCRSRISSKMDSALEFGVDADGDQSGLGTSSSSREEKVSSLKTGLVHVARKMPKNAHAHFLLGLMYQRLGQ 90 (470)
Q Consensus 11 ~~~~~~~~g~~~~a~~~~~~~~l~~~p~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~l~~~~~~~g~ 90 (470)
.+..+...|++++|+ ..+.++++.+|++...+..+|.+ +...|++++|...++++++.+|.++.++..+|.++...|+
T Consensus 5 ~a~~~~~~g~~~~A~-~~~~~~~~~~p~~~~~~~~l~~~-~~~~~~~~~a~~~~~~a~~~~p~~~~~~~~lg~~~~~~g~ 82 (388)
T 1w3b_A 5 LAHREYQAGDFEAAE-RHCMQLWRQEPDNTGVLLLLSSI-HFQCRRLDRSAHFSTLAIKQNPLLAEAYSNLGNVYKERGQ 82 (388)
T ss_dssp HHHHHHHHTCHHHHH-HHHHHHHHHCTTCHHHHHHHHHH-HHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTC
T ss_pred HHHHHHHCCCHHHHH-HHHHHHHHhCCCCHHHHHHHHHH-HHHcCCHHHHHHHHHHHHhcCCCchHHHHHHHHHHHHCCC
Confidence 467788999999999 99999999999999999999999 9999999999999999999999999999999999999999
Q ss_pred hhHHHHHHHHHHHHHhhhhcccchhhhHHHHHHhhhccccccccCCCccccccCcccHHHHHHHHHHhhhcCccchHHHH
Q 012143 91 PLKAVSSYEKAEEILLRCEADIARPELLSLVQIHHAQCLLPESSGDNSLDKELEPEELEEILSKLKESMQSDTRQAVVWN 170 (470)
Q Consensus 91 ~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~ 170 (470)
+++|+..|+++++.+|+.. ..+..++.++ ...|++++|+..|++++..+|+++.++.
T Consensus 83 ~~~A~~~~~~al~~~p~~~------------~~~~~l~~~~-----------~~~g~~~~A~~~~~~al~~~p~~~~~~~ 139 (388)
T 1w3b_A 83 LQEAIEHYRHALRLKPDFI------------DGYINLAAAL-----------VAAGDMEGAVQAYVSALQYNPDLYCVRS 139 (388)
T ss_dssp HHHHHHHHHHHHHHCTTCH------------HHHHHHHHHH-----------HHHSCSSHHHHHHHHHHHHCTTCTHHHH
T ss_pred HHHHHHHHHHHHHcCcchH------------HHHHHHHHHH-----------HHcCCHHHHHHHHHHHHHhCCCcHHHHH
Confidence 9999999999999876642 2334444444 3455669999999999999999999999
Q ss_pred HHHHHHHHcCChHHHHHHHHHHhhcCCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCChHHHHHHHHHHHhhhcc
Q 012143 171 TLGLILLKSGRLQSSISVLSSLLAVDPNNCDCIGNLGIAYFQSGDMEQSAKCFQDLILKDQNHPAALINYAALLLCKYGS 250 (470)
Q Consensus 171 ~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~l~~~~~~~~~~ 250 (470)
.+|.++...|++++|+..|+++++.+|+++.++..+|.++...|++++|+..|++++..+|++..++..+|.++.
T Consensus 140 ~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~----- 214 (388)
T 1w3b_A 140 DLGNLLKALGRLEEAKACYLKAIETQPNFAVAWSNLGCVFNAQGEIWLAIHHFEKAVTLDPNFLDAYINLGNVLK----- 214 (388)
T ss_dssp HHHHHHHTTSCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHH-----
T ss_pred HHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCcHHHHHHHHHHHH-----
Confidence 999999999999999999999999999999999999999999999999999999999999999999999988887
Q ss_pred cccccccchhhhhHHHhcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCChhHHHHHHHHHHhcCCCcccHHHHHH
Q 012143 251 VLAGAGANTGEGACLDQASAVNVAKECLLAALKADPKAAHIWANLANAYYLTGDHRSSGKCLEKAAKLEPNCMSTRYAVA 330 (470)
Q Consensus 251 ~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~p~~~~~~~~l~ 330 (470)
..|++++|+..|++++..+|+++.++..+|.++...|++++|+..|++++..+|+++.++
T Consensus 215 ----------------~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~---- 274 (388)
T 1w3b_A 215 ----------------EARIFDRAVAAYLRALSLSPNHAVVHGNLACVYYEQGLIDLAIDTYRRAIELQPHFPDAY---- 274 (388)
T ss_dssp ----------------TTTCTTHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTCSSCHHHH----
T ss_pred ----------------HcCCHHHHHHHHHHHHhhCcCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHH----
Confidence 799999999999999999999999999999999999999999999999999999876544
Q ss_pred HHHHHHhhhccCchHHhhhhHHHHHHHhhcCCCCCCCcHHHHHHHHHHHhccccHHHHHHHHHHHhc--chhhhhHhhHH
Q 012143 331 VSRIKDAERSQEPTEQLSWAGNEMASILREGDPVQIEPPIAWAGFAAVQKTHHEVAAAFETEENELS--KMEECAGAGES 408 (470)
Q Consensus 331 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~--~~~~~~~~~l~ 408 (470)
..+|.++...|++++|+..+.+.+. |....++..+|
T Consensus 275 ------------------------------------------~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~ 312 (388)
T 1w3b_A 275 ------------------------------------------CNLANALKEKGSVAEAEDCYNTALRLCPTHADSLNNLA 312 (388)
T ss_dssp ------------------------------------------HHHHHHHHHHSCHHHHHHHHHHHHHHCTTCHHHHHHHH
T ss_pred ------------------------------------------HHHHHHHHHcCCHHHHHHHHHHHHhhCcccHHHHHHHH
Confidence 4445555555555555555555332 33344455555
Q ss_pred HHHHHhccHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHcCChHHHHHHHHHHHHhhc
Q 012143 409 AFLDQASAVNVAKECLLAALKADPKAAHIWANLANAYYLTGDHRSSGKCLEKVLMVYC 466 (470)
Q Consensus 409 ~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~ 466 (470)
.++...|++++|+..|+++++..|+++.++..+|.++...|++++|+.+|++++++.|
T Consensus 313 ~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~p 370 (388)
T 1w3b_A 313 NIKREQGNIEEAVRLYRKALEVFPEFAAAHSNLASVLQQQGKLQEALMHYKEAIRISP 370 (388)
T ss_dssp HHHHTTTCHHHHHHHHHHHTTSCTTCHHHHHHHHHHHHTTTCCHHHHHHHHHHHTTCT
T ss_pred HHHHHcCCHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCC
Confidence 5555555555555555555555555555555555555555555555555555555443
|
| >1w3b_A UDP-N-acetylglucosamine--peptide N-acetylglucosaminyltransferase 110; OGT, glcnac, nucleoporin, O-linked glycosylation, TPR repeat, protein binding; 2.85A {Homo sapiens} SCOP: a.118.8.1 | Back alignment and structure |
|---|
Probab=100.00 E-value=1.6e-41 Score=313.58 Aligned_cols=348 Identities=18% Similarity=0.184 Sum_probs=321.7
Q ss_pred hhhhhhhhhhhHHHHHHHHHHHHhcCCCCcchhhhcccchhhhhcChhhHHHHHHHHHHhCCCChhHHHHHHHHHHHhCC
Q 012143 11 EGKKINKLGKCRSRISSKMDSALEFGVDADGDQSGLGTSSSSREEKVSSLKTGLVHVARKMPKNAHAHFLLGLMYQRLGQ 90 (470)
Q Consensus 11 ~~~~~~~~g~~~~a~~~~~~~~l~~~p~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~l~~~~~~~g~ 90 (470)
-|..+...|+++++. ..+..++..+|+++..|+.+|.+ +...|++++|+..|+++++.+|+++.++..+|.++...|+
T Consensus 39 l~~~~~~~~~~~~a~-~~~~~a~~~~p~~~~~~~~lg~~-~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~ 116 (388)
T 1w3b_A 39 LSSIHFQCRRLDRSA-HFSTLAIKQNPLLAEAYSNLGNV-YKERGQLQEAIEHYRHALRLKPDFIDGYINLAAALVAAGD 116 (388)
T ss_dssp HHHHHHHTTCHHHHH-HHHHHHHHHCTTCHHHHHHHHHH-HHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHSC
T ss_pred HHHHHHHcCCHHHHH-HHHHHHHhcCCCchHHHHHHHHH-HHHCCCHHHHHHHHHHHHHcCcchHHHHHHHHHHHHHcCC
Confidence 456677889999999 99999999999999999999999 9999999999999999999999999999999999999999
Q ss_pred hhHHHHHHHHHHHHHhhhhcccchhhhHHHHHHhhhccccccccCCCccccccCcccHHHHHHHHHHhhhcCccchHHHH
Q 012143 91 PLKAVSSYEKAEEILLRCEADIARPELLSLVQIHHAQCLLPESSGDNSLDKELEPEELEEILSKLKESMQSDTRQAVVWN 170 (470)
Q Consensus 91 ~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~ 170 (470)
+++|+..|+++++.+|+.. .++..++.+ +...|++++|+..|++++..+|+++.++.
T Consensus 117 ~~~A~~~~~~al~~~p~~~------------~~~~~l~~~-----------~~~~g~~~~A~~~~~~al~~~p~~~~~~~ 173 (388)
T 1w3b_A 117 MEGAVQAYVSALQYNPDLY------------CVRSDLGNL-----------LKALGRLEEAKACYLKAIETQPNFAVAWS 173 (388)
T ss_dssp SSHHHHHHHHHHHHCTTCT------------HHHHHHHHH-----------HHTTSCHHHHHHHHHHHHHHCTTCHHHHH
T ss_pred HHHHHHHHHHHHHhCCCcH------------HHHHHHHHH-----------HHHccCHHHHHHHHHHHHHhCCCCHHHHH
Confidence 9999999999999877632 222333333 34667789999999999999999999999
Q ss_pred HHHHHHHHcCChHHHHHHHHHHhhcCCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCChHHHHHHHHHHHhhhcc
Q 012143 171 TLGLILLKSGRLQSSISVLSSLLAVDPNNCDCIGNLGIAYFQSGDMEQSAKCFQDLILKDQNHPAALINYAALLLCKYGS 250 (470)
Q Consensus 171 ~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~l~~~~~~~~~~ 250 (470)
.+|.++...|++++|+..|+++++.+|+++.++..+|.++...|++++|+..|++++..+|+++.++..++.++.
T Consensus 174 ~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~----- 248 (388)
T 1w3b_A 174 NLGCVFNAQGEIWLAIHHFEKAVTLDPNFLDAYINLGNVLKEARIFDRAVAAYLRALSLSPNHAVVHGNLACVYY----- 248 (388)
T ss_dssp HHHHHHHTTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHTTTCTTHHHHHHHHHHHHCTTCHHHHHHHHHHHH-----
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCcCCHHHHHHHHHHHH-----
Confidence 999999999999999999999999999999999999999999999999999999999999999999999988887
Q ss_pred cccccccchhhhhHHHhcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCChhHHHHHHHHHHhcCCCcccHHHHHH
Q 012143 251 VLAGAGANTGEGACLDQASAVNVAKECLLAALKADPKAAHIWANLANAYYLTGDHRSSGKCLEKAAKLEPNCMSTRYAVA 330 (470)
Q Consensus 251 ~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~p~~~~~~~~l~ 330 (470)
..|++++|+..|+++++.+|+++.++..+|.++...|++++|+..|+++++..|++.
T Consensus 249 ----------------~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~------- 305 (388)
T 1w3b_A 249 ----------------EQGLIDLAIDTYRRAIELQPHFPDAYCNLANALKEKGSVAEAEDCYNTALRLCPTHA------- 305 (388)
T ss_dssp ----------------HTTCHHHHHHHHHHHHHTCSSCHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHCTTCH-------
T ss_pred ----------------HcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCcccH-------
Confidence 799999999999999999999999999999999999999999999999999998854
Q ss_pred HHHHHHhhhccCchHHhhhhHHHHHHHhhcCCCCCCCcHHHHHHHHHHHhccccHHHHHHHHHHHhc--chhhhhHhhHH
Q 012143 331 VSRIKDAERSQEPTEQLSWAGNEMASILREGDPVQIEPPIAWAGFAAVQKTHHEVAAAFETEENELS--KMEECAGAGES 408 (470)
Q Consensus 331 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~--~~~~~~~~~l~ 408 (470)
.++..+|.++...|++++|+..+.+.+. |....+++.+|
T Consensus 306 ---------------------------------------~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~ 346 (388)
T 1w3b_A 306 ---------------------------------------DSLNNLANIKREQGNIEEAVRLYRKALEVFPEFAAAHSNLA 346 (388)
T ss_dssp ---------------------------------------HHHHHHHHHHHTTTCHHHHHHHHHHHTTSCTTCHHHHHHHH
T ss_pred ---------------------------------------HHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCcHHHHHHHH
Confidence 4677788899999999999999999766 55567899999
Q ss_pred HHHHHhccHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHcCC
Q 012143 409 AFLDQASAVNVAKECLLAALKADPKAAHIWANLANAYYLTGD 450 (470)
Q Consensus 409 ~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~ 450 (470)
.++...|++++|+..|+++++++|+++.+++.+|.++..+|+
T Consensus 347 ~~~~~~g~~~~A~~~~~~a~~~~p~~~~a~~~lg~~~~~~~~ 388 (388)
T 1w3b_A 347 SVLQQQGKLQEALMHYKEAIRISPTFADAYSNMGNTLKEMQD 388 (388)
T ss_dssp HHHHTTTCCHHHHHHHHHHHTTCTTCHHHHHHHHHHHHHTCC
T ss_pred HHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHhHHHHHHHccC
Confidence 999999999999999999999999999999999999988875
|
| >2gw1_A Mitochondrial precursor proteins import receptor; TPR, protein transport; 3.00A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=100.00 E-value=3e-39 Score=309.85 Aligned_cols=380 Identities=13% Similarity=0.085 Sum_probs=330.0
Q ss_pred hhhhhhhhhhhhhhhHHHHHHHHHHHHhcCCCCcchhhhcccchhhhhcChhhHHHHHHHHHHhCCCChhHHHHHHHHHH
Q 012143 7 VAEVEGKKINKLGKCRSRISSKMDSALEFGVDADGDQSGLGTSSSSREEKVSSLKTGLVHVARKMPKNAHAHFLLGLMYQ 86 (470)
Q Consensus 7 ~~~~~~~~~~~~g~~~~a~~~~~~~~l~~~p~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~l~~~~~ 86 (470)
.....|..+...|++.+|+ ..+++++..+| ++..|..+|.+ +...|++++|+..++++++.+|+++.+++.+|.++.
T Consensus 8 ~~~~~g~~~~~~g~~~~A~-~~~~~al~~~p-~~~~~~~la~~-~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~ 84 (514)
T 2gw1_A 8 ALKDKGNQFFRNKKYDDAI-KYYNWALELKE-DPVFYSNLSAC-YVSVGDLKKVVEMSTKALELKPDYSKVLLRRASANE 84 (514)
T ss_dssp HHHHHHHHHHHTSCHHHHH-HHHHHHHHHCC-CHHHHHHHHHH-HHHHTCHHHHHHHHHHHHHHCSCCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhccHHHHH-HHHHHHHhcCc-cHHHHHhHHHH-HHHHhhHHHHHHHHHHHhccChHHHHHHHHHHHHHH
Confidence 3445788999999999999 99999999999 58899999999 999999999999999999999999999999999999
Q ss_pred HhCChhHHHHHHHHHHHHHhhhhcccchhhhHHH----------------------------------------------
Q 012143 87 RLGQPLKAVSSYEKAEEILLRCEADIARPELLSL---------------------------------------------- 120 (470)
Q Consensus 87 ~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~---------------------------------------------- 120 (470)
..|++++|+..|++++...|.+..... .....
T Consensus 85 ~~g~~~~A~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 162 (514)
T 2gw1_A 85 GLGKFADAMFDLSVLSLNGDFNDASIE--PMLERNLNKQAMSKLKEKFGDIDTATATPTELSTQPAKERKDKQENLPSVT 162 (514)
T ss_dssp HTTCHHHHHHHHHHHHHSSSCCGGGTH--HHHHHHHHHHHHHHHTTC---------------------------CCCCHH
T ss_pred HHhhHHHHHHHHHHHHhcCCCccchHH--HHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhccCChhhHHHhhccCCchhH
Confidence 999999999999999988764322110 00000
Q ss_pred -----------------------HHHhhhccccccccCCCccccccCcccHHHHHHHHHHhhh-----c---------Cc
Q 012143 121 -----------------------VQIHHAQCLLPESSGDNSLDKELEPEELEEILSKLKESMQ-----S---------DT 163 (470)
Q Consensus 121 -----------------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~-----~---------~p 163 (470)
...+...+..+. .+...|++++|+..|++++. . .|
T Consensus 163 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--------~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~ 234 (514)
T 2gw1_A 163 SMASFFGIFKPELTFANYDESNEADKELMNGLSNL--------YKRSPESYDKADESFTKAARLFEEQLDKNNEDEKLKE 234 (514)
T ss_dssp HHHHHHTTSCCCCCCSSCCSSCHHHHHHHHHHHHH--------SSCCTTHHHHHHHHHHHHHHHHHHHTTTSTTCHHHHH
T ss_pred HHHHHHhhcCHHHHHHHhcCCcHHHHHHHHHHHHH--------HhhhhccHHHHHHHHHHHHHHhhhhhccCccccccCh
Confidence 001111111100 01247999999999999998 5 36
Q ss_pred cchHHHHHHHHHHHHcCChHHHHHHHHHHhhcCCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCChHHHHHHHHH
Q 012143 164 RQAVVWNTLGLILLKSGRLQSSISVLSSLLAVDPNNCDCIGNLGIAYFQSGDMEQSAKCFQDLILKDQNHPAALINYAAL 243 (470)
Q Consensus 164 ~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~l~~~ 243 (470)
.++.++..+|.++...|++++|+..|+++++.+|. +.++..+|.++...|++++|+..+++++..+|.+..++..++.+
T Consensus 235 ~~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~~~-~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~ 313 (514)
T 2gw1_A 235 KLAISLEHTGIFKFLKNDPLGAHEDIKKAIELFPR-VNSYIYMALIMADRNDSTEYYNYFDKALKLDSNNSSVYYHRGQM 313 (514)
T ss_dssp HHHHHHHHHHHHHHHSSCHHHHHHHHHHHHHHCCC-HHHHHHHHHHHHTSSCCTTGGGHHHHHHTTCTTCTHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHCCCHHHHHHHHHHHHhhCcc-HHHHHHHHHHHHHCCCHHHHHHHHHHHhhcCcCCHHHHHHHHHH
Confidence 66889999999999999999999999999999999 99999999999999999999999999999999999999988888
Q ss_pred HHhhhcccccccccchhhhhHHHhcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCChhHHHHHHHHHHhcCCCcc
Q 012143 244 LLCKYGSVLAGAGANTGEGACLDQASAVNVAKECLLAALKADPKAAHIWANLANAYYLTGDHRSSGKCLEKAAKLEPNCM 323 (470)
Q Consensus 244 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~p~~~ 323 (470)
+. ..|++++|+..|+++++..|.++.++..+|.++...|++++|+..+++++...|+++
T Consensus 314 ~~---------------------~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~ 372 (514)
T 2gw1_A 314 NF---------------------ILQNYDQAGKDFDKAKELDPENIFPYIQLACLAYRENKFDDCETLFSEAKRKFPEAP 372 (514)
T ss_dssp HH---------------------HTTCTTHHHHHHHHHHHTCSSCSHHHHHHHHHTTTTTCHHHHHHHHHHHHHHSTTCS
T ss_pred HH---------------------HhCCHHHHHHHHHHHHHhChhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHcccCH
Confidence 87 799999999999999999999999999999999999999999999999999988754
Q ss_pred cHHHHHHHHHHHHhhhccCchHHhhhhHHHHHHHhhcCCCCCCCcHHHHHHHHHHHhccccHHHHHHHHHHHhcchhhh-
Q 012143 324 STRYAVAVSRIKDAERSQEPTEQLSWAGNEMASILREGDPVQIEPPIAWAGFAAVQKTHHEVAAAFETEENELSKMEEC- 402 (470)
Q Consensus 324 ~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~- 402 (470)
.++..+|.++...|++++|+..+.+.+...+..
T Consensus 373 ----------------------------------------------~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~ 406 (514)
T 2gw1_A 373 ----------------------------------------------EVPNFFAEILTDKNDFDKALKQYDLAIELENKLD 406 (514)
T ss_dssp ----------------------------------------------HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTSS
T ss_pred ----------------------------------------------HHHHHHHHHHHHCCCHHHHHHHHHHHHHhhhccc
Confidence 356777888889999999999999866633332
Q ss_pred -------hHhhHHHHHHH---hccHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHcCChHHHHHHHHHHHHhhcc
Q 012143 403 -------AGAGESAFLDQ---ASAVNVAKECLLAALKADPKAAHIWANLANAYYLTGDHRSSGKCLEKVLMVYCS 467 (470)
Q Consensus 403 -------~~~~l~~~~~~---~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~ 467 (470)
+++.+|.++.. .|++++|+..|+++++.+|+++.++..+|.++...|++++|+.+|++++++.|+
T Consensus 407 ~~~~~~~~~~~l~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~ 481 (514)
T 2gw1_A 407 GIYVGIAPLVGKATLLTRNPTVENFIEATNLLEKASKLDPRSEQAKIGLAQMKLQQEDIDEAITLFEESADLART 481 (514)
T ss_dssp SCSSCSHHHHHHHHHHHTSCCTTHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSS
T ss_pred hHHHHHHHHHHHHHHHhhhhhcCCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhccc
Confidence 78899999999 999999999999999999999999999999999999999999999999998775
|
| >3fp2_A TPR repeat-containing protein YHR117W; TOM71, mitochondria translocation, allosteric REG phosphoprotein, TPR repeat, ATP-binding; 1.98A {Saccharomyces cerevisiae} PDB: 3fp3_A 3fp4_A 3lca_A | Back alignment and structure |
|---|
Probab=100.00 E-value=1.1e-38 Score=307.65 Aligned_cols=385 Identities=13% Similarity=0.095 Sum_probs=318.4
Q ss_pred hhhhhhhhhhhhHHHHHHHHHHHHhcCCCCcchhhhcccchhhhhcChhhHHHHHHHHHHhCCCChhHHHHHHHHHHHhC
Q 012143 10 VEGKKINKLGKCRSRISSKMDSALEFGVDADGDQSGLGTSSSSREEKVSSLKTGLVHVARKMPKNAHAHFLLGLMYQRLG 89 (470)
Q Consensus 10 ~~~~~~~~~g~~~~a~~~~~~~~l~~~p~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~l~~~~~~~g 89 (470)
..|..+...|++++|+ ..++++++.+|+++..|..+|.+ +...|++++|+..|+++++.+|+++.+++.+|.++...|
T Consensus 30 ~~g~~~~~~g~~~~A~-~~~~~al~~~p~~~~~~~~la~~-~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g 107 (537)
T 3fp2_A 30 NRGNHFFTAKNFNEAI-KYYQYAIELDPNEPVFYSNISAC-YISTGDLEKVIEFTTKALEIKPDHSKALLRRASANESLG 107 (537)
T ss_dssp HHHHHHHHTTCCC-CH-HHHHHHHHHCTTCHHHHHHHHHH-HHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHhccHHHHH-HHHHHHHhhCCCCcHHHHHHHHH-HHHcCCHHHHHHHHHHHHhcCCchHHHHHHHHHHHHHcC
Confidence 3588899999999999 99999999999999999999999 999999999999999999999999999999999999999
Q ss_pred ChhHHHHHHHHHHHHHhhhhcccchhhhH-----------------------------HHHH------------------
Q 012143 90 QPLKAVSSYEKAEEILLRCEADIARPELL-----------------------------SLVQ------------------ 122 (470)
Q Consensus 90 ~~~~A~~~~~~al~~~~~~~~~~~~~~~~-----------------------------~~~~------------------ 122 (470)
++++|+..|+ ++...|+........... ....
T Consensus 108 ~~~~A~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 186 (537)
T 3fp2_A 108 NFTDAMFDLS-VLSLNGDFDGASIEPMLERNLNKQAMKVLNENLSKDEGRGSQVLPSNTSLASFFGIFDSHLEVSSVNTS 186 (537)
T ss_dssp CHHHHHHHHH-HHC-----------CHHHHHHHHHHHHHHHHHCC-------CCCCCHHHHHHHHHTSCHHHHHHTSCCC
T ss_pred CHHHHHHHHH-HHhcCCCCChHHHHHHHHHHHHHHHHHHHHHHHHhCccccccccchHhHHHHHHHhcChHHHHHHHhhc
Confidence 9999999995 776666543211000000 0000
Q ss_pred ---------HhhhccccccccCCCccccccCcccHHHHHHHHHHhhhcCccchH-------HHHHHHHHHHHcCChHHHH
Q 012143 123 ---------IHHAQCLLPESSGDNSLDKELEPEELEEILSKLKESMQSDTRQAV-------VWNTLGLILLKSGRLQSSI 186 (470)
Q Consensus 123 ---------~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~p~~~~-------~~~~l~~~~~~~~~~~~A~ 186 (470)
....+..++...+ .......|++++|+..+++++..+|+++. ++..+|.++...|++++|+
T Consensus 187 ~~~~~~~~~~~~~l~~~~~~~~---~~~~~a~~~~~~A~~~~~~~l~~~p~~~~~~~~~~~~~~~~g~~~~~~~~~~~A~ 263 (537)
T 3fp2_A 187 SNYDTAYALLSDALQRLYSATD---EGYLVANDLLTKSTDMYHSLLSANTVDDPLRENAALALCYTGIFHFLKNNLLDAQ 263 (537)
T ss_dssp CSSCSSHHHHHHHHHHHHTCSH---HHHHHHHHHHHHHHHHHHHHHC--CCCHHHHHHHHHHHHHHHHHHHHTTCHHHHH
T ss_pred cccccHHHHHHHHHHHHHHhhh---hhhHHHHHHHHHHHHHHHHHHHHCCCcchhhHHHHHHHHHHHHHHHhcccHHHHH
Confidence 0000000000000 00011235899999999999999999865 5778889999999999999
Q ss_pred HHHHHHhhcCCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCChHHHHHHHHHHHhhhcccccccccchhhhhHHH
Q 012143 187 SVLSSLLAVDPNNCDCIGNLGIAYFQSGDMEQSAKCFQDLILKDQNHPAALINYAALLLCKYGSVLAGAGANTGEGACLD 266 (470)
Q Consensus 187 ~~~~~a~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~ 266 (470)
..|++++..+|+ +.++..+|.++...|++++|+..+++++..+|+++.++..+|.++.
T Consensus 264 ~~~~~~~~~~~~-~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~--------------------- 321 (537)
T 3fp2_A 264 VLLQESINLHPT-PNSYIFLALTLADKENSQEFFKFFQKAVDLNPEYPPTYYHRGQMYF--------------------- 321 (537)
T ss_dssp HHHHHHHHHCCC-HHHHHHHHHHTCCSSCCHHHHHHHHHHHHHCTTCHHHHHHHHHHHH---------------------
T ss_pred HHHHHHHhcCCC-chHHHHHHHHHHHhcCHHHHHHHHHHHhccCCCCHHHHHHHHHHHH---------------------
Confidence 999999999999 9999999999999999999999999999999999999999988887
Q ss_pred hcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCChhHHHHHHHHHHhcCCCcccHHHHHHHHHHHHhhhccCchHH
Q 012143 267 QASAVNVAKECLLAALKADPKAAHIWANLANAYYLTGDHRSSGKCLEKAAKLEPNCMSTRYAVAVSRIKDAERSQEPTEQ 346 (470)
Q Consensus 267 ~~~~~~~A~~~~~~~~~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~p~~~~~~~~l~~~~~~~~~~~~~~~~~ 346 (470)
..|++++|+..|+++++.+|+++.++..+|.++...|++++|+..+++++...|++.
T Consensus 322 ~~~~~~~A~~~~~~a~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~----------------------- 378 (537)
T 3fp2_A 322 ILQDYKNAKEDFQKAQSLNPENVYPYIQLACLLYKQGKFTESEAFFNETKLKFPTLP----------------------- 378 (537)
T ss_dssp HTTCHHHHHHHHHHHHHHCTTCSHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCT-----------------------
T ss_pred hcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCh-----------------------
Confidence 799999999999999999999999999999999999999999999999999998854
Q ss_pred hhhhHHHHHHHhhcCCCCCCCcHHHHHHHHHHHhccccHHHHHHHHHHHhcch--hhhh------HhhHHHHHHHh----
Q 012143 347 LSWAGNEMASILREGDPVQIEPPIAWAGFAAVQKTHHEVAAAFETEENELSKM--EECA------GAGESAFLDQA---- 414 (470)
Q Consensus 347 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~--~~~~------~~~l~~~~~~~---- 414 (470)
.++..+|.++...|++++|+..+.+.+... .... ++.+|.++...
T Consensus 379 -----------------------~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~ 435 (537)
T 3fp2_A 379 -----------------------EVPTFFAEILTDRGDFDTAIKQYDIAKRLEEVQEKIHVGIGPLIGKATILARQSSQD 435 (537)
T ss_dssp -----------------------HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHCSSCSSTTHHHHHHHHHHHHHHTC-
T ss_pred -----------------------HHHHHHHHHHHHhCCHHHHHHHHHHHHHcCCcchhhHHHHHHHHHHHHHHHHHhhcc
Confidence 356677888999999999999999966533 3333 34556888888
Q ss_pred ------ccHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHcCChHHHHHHHHHHHHhhccC
Q 012143 415 ------SAVNVAKECLLAALKADPKAAHIWANLANAYYLTGDHRSSGKCLEKVLMVYCSS 468 (470)
Q Consensus 415 ------~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~ 468 (470)
|++++|+.+|+++++.+|+++.++..+|.++...|++++|+.+|++++++.|+.
T Consensus 436 ~~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~ 495 (537)
T 3fp2_A 436 PTQLDEEKFNAAIKLLTKACELDPRSEQAKIGLAQLKLQMEKIDEAIELFEDSAILARTM 495 (537)
T ss_dssp ---CCHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--C
T ss_pred chhhhHhHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCCc
Confidence 999999999999999999999999999999999999999999999999998753
|
| >2xpi_A Anaphase-promoting complex subunit CUT9; cell cycle, TPR, ubiquitin ligase; 2.60A {Schizosaccharomyces pombe} | Back alignment and structure |
|---|
Probab=100.00 E-value=2.3e-38 Score=309.42 Aligned_cols=409 Identities=14% Similarity=0.108 Sum_probs=336.5
Q ss_pred hhhhhhhhhhhHHHHHHHHHHHHhcCCCCcchhhhcccchhhhhcChhhHHHHHHHHHHhCCCC----------------
Q 012143 11 EGKKINKLGKCRSRISSKMDSALEFGVDADGDQSGLGTSSSSREEKVSSLKTGLVHVARKMPKN---------------- 74 (470)
Q Consensus 11 ~~~~~~~~g~~~~a~~~~~~~~l~~~p~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~p~~---------------- 74 (470)
-+..+...|++++++ ..+.+++.. |.+...+..++.+ +...|++++|...|++ ..|..
T Consensus 123 l~~~~~~~g~~~~A~-~~~~~~~~~-~~~~~~~~~l~~~-~~~~g~~~~A~~~~~~---~~~~~~~~~~~~~~~~~~~~~ 196 (597)
T 2xpi_A 123 LAQVYCCTGDYARAK-CLLTKEDLY-NRSSACRYLAAFC-LVKLYDWQGALNLLGE---TNPFRKDEKNANKLLMQDGGI 196 (597)
T ss_dssp HHHHHHHTTCHHHHH-HHHHHTCGG-GTCHHHHHHHHHH-HHHTTCHHHHHHHHCS---SCTTC----------CCCSSC
T ss_pred HHHHHHHcCcHHHHH-HHHHHHhcc-ccchhHHHHHHHH-HHHHhhHHHHHHHHhc---cCCcccccccccccccccccc
Confidence 355566777777777 677766554 5566777788888 8888888888888875 34554
Q ss_pred ---hhHHHHHHHHHHHhCChhHHHHHHHHHHHHHhhhhcccchhhhHHHHHHhh------------------------hc
Q 012143 75 ---AHAHFLLGLMYQRLGQPLKAVSSYEKAEEILLRCEADIARPELLSLVQIHH------------------------AQ 127 (470)
Q Consensus 75 ---~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~------------------------~~ 127 (470)
+.+|+.+|.+|...|++++|+..|+++++.+|...... ..++.++. ..
T Consensus 197 ~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~-----~~l~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~ 271 (597)
T 2xpi_A 197 KLEASMCYLRGQVYTNLSNFDRAKECYKEALMVDAKCYEAF-----DQLVSNHLLTADEEWDLVLKLNYSTYSKEDAAFL 271 (597)
T ss_dssp CHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHH-----HHHHHTTCSCHHHHHHHHHHSCTHHHHGGGHHHH
T ss_pred chhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCchhhHHH-----HHHHHhhcccchhHHHHHHhcCCcccccchHHHH
Confidence 78999999999999999999999999999877642210 00000000 00
Q ss_pred cccccccCCCccccccCcccHHHHHHHHHHhhhcCccchHHHHHHHHHHHHcCChHHHHHHHHHHhhcCCCChHHHHHHH
Q 012143 128 CLLPESSGDNSLDKELEPEELEEILSKLKESMQSDTRQAVVWNTLGLILLKSGRLQSSISVLSSLLAVDPNNCDCIGNLG 207 (470)
Q Consensus 128 ~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~la 207 (470)
..++..++.. +.+.|++++|+..|++++.. |.++.++..+|.++...|++++|+..|+++++.+|++..++..++
T Consensus 272 ~~~~~~~~~~----~~~~g~~~~A~~~~~~~~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~ 346 (597)
T 2xpi_A 272 RSLYMLKLNK----TSHEDELRRAEDYLSSINGL-EKSSDLLLCKADTLFVRSRFIDVLAITTKILEIDPYNLDVYPLHL 346 (597)
T ss_dssp HHHHHTTSCT----TTTHHHHHHHHHHHHTSTTG-GGCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCCTTHHHHH
T ss_pred HHHHHHHHHH----HcCcchHHHHHHHHHHhhcC-CchHHHHHHHHHHHHHhcCHHHHHHHHHHHHHcCcccHHHHHHHH
Confidence 0011222333 67889999999999999988 788999999999999999999999999999999999999999999
Q ss_pred HHHHHcCCHHHHHHHHHHHHhhCCCChHHHHHHHHHHHhhhcccccccccchhhhhHHHhcCCHHHHHHHHHHHHhcCCC
Q 012143 208 IAYFQSGDMEQSAKCFQDLILKDQNHPAALINYAALLLCKYGSVLAGAGANTGEGACLDQASAVNVAKECLLAALKADPK 287 (470)
Q Consensus 208 ~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~p~ 287 (470)
.++...|++++|+..+++++...|++...+..++.++. +.|++++|+.+|+++++.+|.
T Consensus 347 ~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~---------------------~~g~~~~A~~~~~~~~~~~~~ 405 (597)
T 2xpi_A 347 ASLHESGEKNKLYLISNDLVDRHPEKAVTWLAVGIYYL---------------------CVNKISEARRYFSKSSTMDPQ 405 (597)
T ss_dssp HHHHHHTCHHHHHHHHHHHHHHCTTSHHHHHHHHHHHH---------------------HTTCHHHHHHHHHHHHHHCTT
T ss_pred HHHHHhCCHHHHHHHHHHHHhhCcccHHHHHHHHHHHH---------------------HhccHHHHHHHHHHHHHhCCC
Confidence 99999999999999999999999999999999888887 799999999999999999999
Q ss_pred CHHHHHHHHHHHHHcCChhHHHHHHHHHHhcCCCcccHHHHHHHHHHHHhhhccCchHHhhhhHHHHHHHhhcCCCCCCC
Q 012143 288 AAHIWANLANAYYLTGDHRSSGKCLEKAAKLEPNCMSTRYAVAVSRIKDAERSQEPTEQLSWAGNEMASILREGDPVQIE 367 (470)
Q Consensus 288 ~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~p~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 367 (470)
+..+|..++.++...|++++|+..|++++...|++...+..++...... ..+..+...+...+.. .|.
T Consensus 406 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~--------g~~~~A~~~~~~~~~~----~~~ 473 (597)
T 2xpi_A 406 FGPAWIGFAHSFAIEGEHDQAISAYTTAARLFQGTHLPYLFLGMQHMQL--------GNILLANEYLQSSYAL----FQY 473 (597)
T ss_dssp CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHTTTTCSHHHHHHHHHHHHH--------TCHHHHHHHHHHHHHH----CCC
T ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCccchHHHHHHHHHHHHc--------CCHHHHHHHHHHHHHh----CCC
Confidence 9999999999999999999999999999999999988888776644331 1122222233333322 345
Q ss_pred cHHHHHHHHHHHhccccHHHHHHHHHHHhcc--------hh-hhhHhhHHHHHHHhccHHHHHHHHHHHHhcCCCcHHHH
Q 012143 368 PPIAWAGFAAVQKTHHEVAAAFETEENELSK--------ME-ECAGAGESAFLDQASAVNVAKECLLAALKADPKAAHIW 438 (470)
Q Consensus 368 ~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~--------~~-~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~ 438 (470)
++.+|..++.++...|++++|+..+.+.+.. .. ...+..+|.++...|++++|+..|+++++.+|+++.+|
T Consensus 474 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~p~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~ 553 (597)
T 2xpi_A 474 DPLLLNELGVVAFNKSDMQTAINHFQNALLLVKKTQSNEKPWAATWANLGHAYRKLKMYDAAIDALNQGLLLSTNDANVH 553 (597)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCSGGGHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSSCCHHHH
T ss_pred ChHHHHHHHHHHHHhCCHHHHHHHHHHHHHhhhccccchhhHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCChHHH
Confidence 7889999999999999999999999996543 21 46789999999999999999999999999999999999
Q ss_pred HHHHHHHHHcCChHHHHHHHHHHHHhhccC
Q 012143 439 ANLANAYYLTGDHRSSGKCLEKVLMVYCSS 468 (470)
Q Consensus 439 ~~la~~~~~~g~~~~A~~~~~~al~~~~~~ 468 (470)
..+|.+|...|++++|..+|++++++.|+.
T Consensus 554 ~~l~~~~~~~g~~~~A~~~~~~~l~~~p~~ 583 (597)
T 2xpi_A 554 TAIALVYLHKKIPGLAITHLHESLAISPNE 583 (597)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHCTTC
T ss_pred HHHHHHHHHhCCHHHHHHHHHHHHhcCCCC
Confidence 999999999999999999999999998764
|
| >2y4t_A DNAJ homolog subfamily C member 3; chaperone, endoplasmic reticulum, protein folding, tetratricopeptiderepeat, J domain, unfolded protein respons; 3.00A {Homo sapiens} PDB: 2y4u_A | Back alignment and structure |
|---|
Probab=100.00 E-value=1.8e-37 Score=292.38 Aligned_cols=358 Identities=14% Similarity=0.110 Sum_probs=307.2
Q ss_pred HHHHHHHHHHHHhcCCCCcchhhhcccchhhhhcChhhHHHHHHHHHHhCCCChhHHHHHHHHHHHhCChhHHHHHHHHH
Q 012143 22 RSRISSKMDSALEFGVDADGDQSGLGTSSSSREEKVSSLKTGLVHVARKMPKNAHAHFLLGLMYQRLGQPLKAVSSYEKA 101 (470)
Q Consensus 22 ~~a~~~~~~~~l~~~p~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~a 101 (470)
.... ..+.+++..+|+++..++.+|.. +...|++++|+..|+++++.+|+++.+++.+|.++...|++++|+..|+++
T Consensus 9 ~~~~-~~~~~~~~~~p~~~~~~~~~~~~-~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~a 86 (450)
T 2y4t_A 9 SGVD-LGTENLYFQSMADVEKHLELGKK-LLAAGQLADALSQFHAAVDGDPDNYIAYYRRATVFLAMGKSKAALPDLTKV 86 (450)
T ss_dssp ---------------CHHHHHHHHHHHH-HHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred cccc-ccccccccccHHHHHHHHHHHHH-HHHCCCHHHHHHHHHHHHHhCCccHHHHHHHHHHHHHCCCHHHHHHHHHHH
Confidence 3444 67888999999999999999999 999999999999999999999999999999999999999999999999999
Q ss_pred HHHHhhhhcccchhhhHHHHHHhhhccccccccCCCccccccCcccHHHHHHHHHHhhhcCccch---HHHHHH------
Q 012143 102 EEILLRCEADIARPELLSLVQIHHAQCLLPESSGDNSLDKELEPEELEEILSKLKESMQSDTRQA---VVWNTL------ 172 (470)
Q Consensus 102 l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~p~~~---~~~~~l------ 172 (470)
++.+|... .++..++.++ ...|++++|+..|++++..+|+++ .++..+
T Consensus 87 l~~~p~~~------------~~~~~l~~~~-----------~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 143 (450)
T 2y4t_A 87 IQLKMDFT------------AARLQRGHLL-----------LKQGKLDEAEDDFKKVLKSNPSENEEKEAQSQLIKSDEM 143 (450)
T ss_dssp HHHCTTCH------------HHHHHHHHHH-----------HHTTCHHHHHHHHHHHHTSCCCHHHHHHHHHHHHHHHHH
T ss_pred HhcCCCcH------------HHHHHHHHHH-----------HHcCCHHHHHHHHHHHHhcCCCChhhHHHHHHHHHHHHH
Confidence 99876531 2334444443 456778999999999999999988 776655
Q ss_pred ------HHHHHHcCChHHHHHHHHHHhhcCCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCChHHHHHHHHHHHh
Q 012143 173 ------GLILLKSGRLQSSISVLSSLLAVDPNNCDCIGNLGIAYFQSGDMEQSAKCFQDLILKDQNHPAALINYAALLLC 246 (470)
Q Consensus 173 ------~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~l~~~~~~ 246 (470)
|.++...|++++|+..|+++++..|.++.++..+|.++...|++++|+..|++++..+|.++.++..++.++.
T Consensus 144 ~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~- 222 (450)
T 2y4t_A 144 QRLRSQALNAFGSGDYTAAIAFLDKILEVCVWDAELRELRAECFIKEGEPRKAISDLKAASKLKNDNTEAFYKISTLYY- 222 (450)
T ss_dssp HHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCGGGGHHHHHHHHHHHCSCHHHHHHHHHHHH-
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHH-
Confidence 6679999999999999999999999999999999999999999999999999999999999999999988887
Q ss_pred hhcccccccccchhhhhHHHhcCCHHHHHHHHHHHHhcCCCCHHHHHHH------------HHHHHHcCChhHHHHHHHH
Q 012143 247 KYGSVLAGAGANTGEGACLDQASAVNVAKECLLAALKADPKAAHIWANL------------ANAYYLTGDHRSSGKCLEK 314 (470)
Q Consensus 247 ~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~l------------a~~~~~~g~~~~A~~~~~~ 314 (470)
..|++++|+..|++++...|++...+..+ |.++...|++++|+.+|++
T Consensus 223 --------------------~~g~~~~A~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~ 282 (450)
T 2y4t_A 223 --------------------QLGDHELSLSEVRECLKLDQDHKRCFAHYKQVKKLNKLIESAEELIRDGRYTDATSKYES 282 (450)
T ss_dssp --------------------HTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHH
T ss_pred --------------------HcCCHHHHHHHHHHHHHhCCChHHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHH
Confidence 79999999999999999999999888776 9999999999999999999
Q ss_pred HHhcCCCcccHHHHHHHHHHHHhhhccCchHHhhhhHHHHHHHhhcCCCCCCCcHHHHHHHHHHHhccccHHHHHHHHHH
Q 012143 315 AAKLEPNCMSTRYAVAVSRIKDAERSQEPTEQLSWAGNEMASILREGDPVQIEPPIAWAGFAAVQKTHHEVAAAFETEEN 394 (470)
Q Consensus 315 a~~~~p~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~ 394 (470)
++...|+++... ...+..+|.++...|++++|+..+.+
T Consensus 283 ~l~~~p~~~~~~------------------------------------------~~~~~~l~~~~~~~g~~~~A~~~~~~ 320 (450)
T 2y4t_A 283 VMKTEPSIAEYT------------------------------------------VRSKERICHCFSKDEKPVEAIRVCSE 320 (450)
T ss_dssp HHHHCCSSHHHH------------------------------------------HHHHHHHHHHHHTTTCHHHHHHHHHH
T ss_pred HHhcCCcchHHH------------------------------------------HHHHHHHHHHHHHCCCHHHHHHHHHH
Confidence 999999865321 13678899999999999999999999
Q ss_pred Hh--cchhhhhHhhHHHHHHHhccHHHHHHHHHHHHhcCCCcHHHHHHHHHH------------HHHcC-----ChHHHH
Q 012143 395 EL--SKMEECAGAGESAFLDQASAVNVAKECLLAALKADPKAAHIWANLANA------------YYLTG-----DHRSSG 455 (470)
Q Consensus 395 ~~--~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~------------~~~~g-----~~~~A~ 455 (470)
.+ .|....++..+|.++...|++++|+..|+++++++|+++.++..++.+ |..+| +.+++.
T Consensus 321 a~~~~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~~~~y~~lg~~~~~~~~~~~ 400 (450)
T 2y4t_A 321 VLQMEPDNVNALKDRAEAYLIEEMYDEAIQDYETAQEHNENDQQIREGLEKAQRLLKQSQKRDYYKILGVKRNAKKQEII 400 (450)
T ss_dssp HHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTSSSCHHHHHHHHHHHHHHHHHHSCCSGGGSCSSTTCCTTHHH
T ss_pred HHHhCcccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCcchHHHHHHHHHHHHHhhcccchhHHHHhCCCccCCHHHHH
Confidence 65 466778899999999999999999999999999999999999999954 55556 667788
Q ss_pred HHHHH-HHHhhcc
Q 012143 456 KCLEK-VLMVYCS 467 (470)
Q Consensus 456 ~~~~~-al~~~~~ 467 (470)
+.|++ +++..|.
T Consensus 401 ~~y~~~~l~~~pd 413 (450)
T 2y4t_A 401 KAYRKLALQWHPD 413 (450)
T ss_dssp HHHHHHHHHSCGG
T ss_pred HHHHHHHHHhCCC
Confidence 88887 7766654
|
| >3ieg_A DNAJ homolog subfamily C member 3; TPR motif, chaperone, endoplasmic reticulum, TPR repeat, UNF protein response; 2.51A {Mus musculus} | Back alignment and structure |
|---|
Probab=100.00 E-value=2.8e-35 Score=268.67 Aligned_cols=315 Identities=14% Similarity=0.104 Sum_probs=261.9
Q ss_pred chhhhcccchhhhhcChhhHHHHHHHHHHhCCCChhHHHHHHHHHHHhCChhHHHHHHHHHHHHHhhhhcccchhhhHHH
Q 012143 41 GDQSGLGTSSSSREEKVSSLKTGLVHVARKMPKNAHAHFLLGLMYQRLGQPLKAVSSYEKAEEILLRCEADIARPELLSL 120 (470)
Q Consensus 41 ~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~ 120 (470)
..++.+|.. +...|++++|...|+++++.+|+++.+++.+|.++...|++++|+..|+++++.
T Consensus 4 ~~~~~~~~~-~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~---------------- 66 (359)
T 3ieg_A 4 EKHLELGKK-LLAAGQLADALSQFHAAVDGDPDNYIAYYRRATVFLAMGKSKAALPDLTKVIAL---------------- 66 (359)
T ss_dssp HHHHHHHHH-HHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH----------------
T ss_pred HHHHHHHHH-HHHcCCHHHHHHHHHHHHhhCcccHHHHHHHHHHHHHccCHHHHHHHHHHHHHh----------------
Confidence 445666666 666677777777777777777776777777777776666666666666666554
Q ss_pred HHHhhhccccccccCCCccccccCcccHHHHHHHHHHhhhcCccchHHHHHHHHHHHHcCChHHHHHHHHHHhhcCC---
Q 012143 121 VQIHHAQCLLPESSGDNSLDKELEPEELEEILSKLKESMQSDTRQAVVWNTLGLILLKSGRLQSSISVLSSLLAVDP--- 197 (470)
Q Consensus 121 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~--- 197 (470)
+|+++.++..+|.++...|++++|+..|+++++.+|
T Consensus 67 -----------------------------------------~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~ 105 (359)
T 3ieg_A 67 -----------------------------------------KMDFTAARLQRGHLLLKQGKLDEAEDDFKKVLKSNPSEQ 105 (359)
T ss_dssp -----------------------------------------CTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHTSCCCHH
T ss_pred -----------------------------------------CCCcchHHHHHHHHHHHcCChHHHHHHHHHHHhcCCccc
Confidence 566677788888888888888888888888888888
Q ss_pred CChHHHHHH------------HHHHHHcCCHHHHHHHHHHHHhhCCCChHHHHHHHHHHHhhhcccccccccchhhhhHH
Q 012143 198 NNCDCIGNL------------GIAYFQSGDMEQSAKCFQDLILKDQNHPAALINYAALLLCKYGSVLAGAGANTGEGACL 265 (470)
Q Consensus 198 ~~~~~~~~l------------a~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~ 265 (470)
+++.++..+ |.++...|++++|+..+++++...|.++.++..++.++.
T Consensus 106 ~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~-------------------- 165 (359)
T 3ieg_A 106 EEKEAESQLVKADEMQRLRSQALDAFDGADYTAAITFLDKILEVCVWDAELRELRAECFI-------------------- 165 (359)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHH--------------------
T ss_pred ChHHHHHHHHHHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCchHHHHHHHHHHH--------------------
Confidence 777777666 799999999999999999999999999999998888887
Q ss_pred HhcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCChhHHHHHHHHHHhcCCCcccHHHHHHHHHHHHhhhccCchH
Q 012143 266 DQASAVNVAKECLLAALKADPKAAHIWANLANAYYLTGDHRSSGKCLEKAAKLEPNCMSTRYAVAVSRIKDAERSQEPTE 345 (470)
Q Consensus 266 ~~~~~~~~A~~~~~~~~~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~p~~~~~~~~l~~~~~~~~~~~~~~~~ 345 (470)
..|++++|+..++++++..|+++.++..+|.++...|++++|+..|+++++..|++...+..+....
T Consensus 166 -~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~------------ 232 (359)
T 3ieg_A 166 -KEGEPRKAISDLKAASKLKSDNTEAFYKISTLYYQLGDHELSLSEVRECLKLDQDHKRCFAHYKQVK------------ 232 (359)
T ss_dssp -HTTCHHHHHHHHHHHHTTCSCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHH------------
T ss_pred -HCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCccchHHHHHHHHHH------------
Confidence 7999999999999999999999999999999999999999999999999999999877554332211
Q ss_pred HhhhhHHHHHHHhhcCCCCCCCcHHHHHHHHHHHhccccHHHHHHHHHHHhc--chhh----hhHhhHHHHHHHhccHHH
Q 012143 346 QLSWAGNEMASILREGDPVQIEPPIAWAGFAAVQKTHHEVAAAFETEENELS--KMEE----CAGAGESAFLDQASAVNV 419 (470)
Q Consensus 346 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~--~~~~----~~~~~l~~~~~~~~~~~~ 419 (470)
.......+|.++...|++++|+..+.+.+. |... ..+..+|.++...|++++
T Consensus 233 ----------------------~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~ 290 (359)
T 3ieg_A 233 ----------------------KLNKLIESAEELIRDGRYTDATSKYESVMKTEPSVAEYTVRSKERICHCFSKDEKPVE 290 (359)
T ss_dssp ----------------------HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCSSHHHHHHHHHHHHHHHHHTTCHHH
T ss_pred ----------------------HHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCchHHHHHHHHHHHHHHHHccCHHH
Confidence 123566778999999999999999999665 3322 346679999999999999
Q ss_pred HHHHHHHHHhcCCCcHHHHHHHHHHHHHcCChHHHHHHHHHHHHhhccC
Q 012143 420 AKECLLAALKADPKAAHIWANLANAYYLTGDHRSSGKCLEKVLMVYCSS 468 (470)
Q Consensus 420 A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~ 468 (470)
|+..|+++++.+|+++.++..+|.++...|++++|+.+|++++++.|+.
T Consensus 291 A~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~a~~~~p~~ 339 (359)
T 3ieg_A 291 AIRICSEVLQMEPDNVNALKDRAEAYLIEEMYDEAIQDYEAAQEHNEND 339 (359)
T ss_dssp HHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCTTC
T ss_pred HHHHHHHHHHhCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCC
Confidence 9999999999999999999999999999999999999999999998764
|
| >3ieg_A DNAJ homolog subfamily C member 3; TPR motif, chaperone, endoplasmic reticulum, TPR repeat, UNF protein response; 2.51A {Mus musculus} | Back alignment and structure |
|---|
Probab=100.00 E-value=1.3e-35 Score=270.92 Aligned_cols=345 Identities=15% Similarity=0.112 Sum_probs=291.3
Q ss_pred hhhhhhhhhhhhhhhhHHHHHHHHHHHHhcCCCCcchhhhcccchhhhhcChhhHHHHHHHHHHhCCCChhHHHHHHHHH
Q 012143 6 DVAEVEGKKINKLGKCRSRISSKMDSALEFGVDADGDQSGLGTSSSSREEKVSSLKTGLVHVARKMPKNAHAHFLLGLMY 85 (470)
Q Consensus 6 ~~~~~~~~~~~~~g~~~~a~~~~~~~~l~~~p~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~l~~~~ 85 (470)
+..-..|..+...|++++|+ ..+.++++.+|+++..++.+|.+ +...|++++|...++++++.+|+++.++..+|.++
T Consensus 4 ~~~~~~~~~~~~~g~~~~A~-~~~~~~l~~~p~~~~~~~~~a~~-~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~ 81 (359)
T 3ieg_A 4 EKHLELGKKLLAAGQLADAL-SQFHAAVDGDPDNYIAYYRRATV-FLAMGKSKAALPDLTKVIALKMDFTAARLQRGHLL 81 (359)
T ss_dssp HHHHHHHHHHHHTTCHHHHH-HHHHHHHHHCTTCHHHHHHHHHH-HHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHH-HHHHHHHhhCcccHHHHHHHHHH-HHHccCHHHHHHHHHHHHHhCCCcchHHHHHHHHH
Confidence 33445788899999999999 99999999999999999999999 99999999999999999999999999999999999
Q ss_pred HHhCChhHHHHHHHHHHHHHh---hhhcccchhhhHHHHHHhhhccccccccCCCccccccCcccHHHHHHHHHHhhhcC
Q 012143 86 QRLGQPLKAVSSYEKAEEILL---RCEADIARPELLSLVQIHHAQCLLPESSGDNSLDKELEPEELEEILSKLKESMQSD 162 (470)
Q Consensus 86 ~~~g~~~~A~~~~~~al~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~ 162 (470)
...|++++|+..|+++++..| ........-........+...+.+ +...|++++|+..+++++...
T Consensus 82 ~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~-----------~~~~~~~~~A~~~~~~~~~~~ 150 (359)
T 3ieg_A 82 LKQGKLDEAEDDFKKVLKSNPSEQEEKEAESQLVKADEMQRLRSQALD-----------AFDGADYTAAITFLDKILEVC 150 (359)
T ss_dssp HHHTCHHHHHHHHHHHHTSCCCHHHHHHHHHHHHHHHHHHHHHHHHHH-----------HHHTTCHHHHHHHHHHHHHHC
T ss_pred HHcCChHHHHHHHHHHHhcCCcccChHHHHHHHHHHHHHHHHHHHHHH-----------HHHccCHHHHHHHHHHHHHhC
Confidence 999999999999999999877 432211111000111112222333 456778899999999999999
Q ss_pred ccchHHHHHHHHHHHHcCChHHHHHHHHHHhhcCCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCChHHHHHHHH
Q 012143 163 TRQAVVWNTLGLILLKSGRLQSSISVLSSLLAVDPNNCDCIGNLGIAYFQSGDMEQSAKCFQDLILKDQNHPAALINYAA 242 (470)
Q Consensus 163 p~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~l~~ 242 (470)
|.++.++..+|.++...|++++|+..++++++..|.++.++..+|.++...|++++|+..++++++..|++...+..+..
T Consensus 151 ~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~ 230 (359)
T 3ieg_A 151 VWDAELRELRAECFIKEGEPRKAISDLKAASKLKSDNTEAFYKISTLYYQLGDHELSLSEVRECLKLDQDHKRCFAHYKQ 230 (359)
T ss_dssp TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCSCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHH
T ss_pred CCchHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCccchHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999987765544
Q ss_pred HHHhhhcccccccccchhhhhHHHhcCCHHHHHHHHHHHHhcCCCCHH----HHHHHHHHHHHcCChhHHHHHHHHHHhc
Q 012143 243 LLLCKYGSVLAGAGANTGEGACLDQASAVNVAKECLLAALKADPKAAH----IWANLANAYYLTGDHRSSGKCLEKAAKL 318 (470)
Q Consensus 243 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~p~~~~----~~~~la~~~~~~g~~~~A~~~~~~a~~~ 318 (470)
+.. .......|.++...|++++|+..++++++..|+++. ++..+|.++...|++++|+..|+++++.
T Consensus 231 ~~~---------~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~ 301 (359)
T 3ieg_A 231 VKK---------LNKLIESAEELIRDGRYTDATSKYESVMKTEPSVAEYTVRSKERICHCFSKDEKPVEAIRICSEVLQM 301 (359)
T ss_dssp HHH---------HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCSSHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHH---------HHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCchHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHh
Confidence 321 122233567777999999999999999999999874 4667899999999999999999999999
Q ss_pred CCCcccHHHHHHHHHHHHhhhccCchHHhhhhHHHHHHHhhcCCCCCCCcHHHHHHHHHHHhccccHHHHHHHHHHHhcc
Q 012143 319 EPNCMSTRYAVAVSRIKDAERSQEPTEQLSWAGNEMASILREGDPVQIEPPIAWAGFAAVQKTHHEVAAAFETEENELSK 398 (470)
Q Consensus 319 ~p~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~ 398 (470)
+|+++..+
T Consensus 302 ~~~~~~~~------------------------------------------------------------------------ 309 (359)
T 3ieg_A 302 EPDNVNAL------------------------------------------------------------------------ 309 (359)
T ss_dssp CTTCHHHH------------------------------------------------------------------------
T ss_pred CcccHHHH------------------------------------------------------------------------
Confidence 88864333
Q ss_pred hhhhhHhhHHHHHHHhccHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHcCC
Q 012143 399 MEECAGAGESAFLDQASAVNVAKECLLAALKADPKAAHIWANLANAYYLTGD 450 (470)
Q Consensus 399 ~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~ 450 (470)
+.+|.++...|++++|+..|+++++++|+++.++..++.++..+++
T Consensus 310 ------~~~~~~~~~~g~~~~A~~~~~~a~~~~p~~~~~~~~l~~~~~~~~~ 355 (359)
T 3ieg_A 310 ------KDRAEAYLIEEMYDEAIQDYEAAQEHNENDQQIREGLEKAQRLLKQ 355 (359)
T ss_dssp ------HHHHHHHHHTTCHHHHHHHHHHHHTTCTTCHHHHHHHHHHHHHHHH
T ss_pred ------HHHHHHHHHcCCHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHH
Confidence 3344477788899999999999999999999999999998876553
|
| >2y4t_A DNAJ homolog subfamily C member 3; chaperone, endoplasmic reticulum, protein folding, tetratricopeptiderepeat, J domain, unfolded protein respons; 3.00A {Homo sapiens} PDB: 2y4u_A | Back alignment and structure |
|---|
Probab=100.00 E-value=2.1e-35 Score=278.23 Aligned_cols=334 Identities=15% Similarity=0.097 Sum_probs=283.2
Q ss_pred hhhHHHHHHHHHHhCCCChhHHHHHHHHHHHhCChhHHHHHHHHHHHHHhhhhcccchhhhHHHHHHhhhccccccccCC
Q 012143 57 VSSLKTGLVHVARKMPKNAHAHFLLGLMYQRLGQPLKAVSSYEKAEEILLRCEADIARPELLSLVQIHHAQCLLPESSGD 136 (470)
Q Consensus 57 ~~~A~~~~~~~l~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 136 (470)
...+...+.+++..+|.++.+++.+|..+...|++++|+..|+++++..|.+ ..++..++.++
T Consensus 8 ~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~g~~~~A~~~~~~~l~~~p~~------------~~~~~~l~~~~----- 70 (450)
T 2y4t_A 8 SSGVDLGTENLYFQSMADVEKHLELGKKLLAAGQLADALSQFHAAVDGDPDN------------YIAYYRRATVF----- 70 (450)
T ss_dssp ---------------CHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTC------------HHHHHHHHHHH-----
T ss_pred cccccccccccccccHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCcc------------HHHHHHHHHHH-----
Confidence 4456677888888999999999999999999999999999999999987653 23344444443
Q ss_pred CccccccCcccHHHHHHHHHHhhhcCccchHHHHHHHHHHHHcCChHHHHHHHHHHhhcCCCCh---HHHHHH-------
Q 012143 137 NSLDKELEPEELEEILSKLKESMQSDTRQAVVWNTLGLILLKSGRLQSSISVLSSLLAVDPNNC---DCIGNL------- 206 (470)
Q Consensus 137 ~~~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~---~~~~~l------- 206 (470)
...|++++|+..|++++..+|+++.++..+|.++...|++++|+..|+++++.+|++. .++..+
T Consensus 71 ------~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 144 (450)
T 2y4t_A 71 ------LAMGKSKAALPDLTKVIQLKMDFTAARLQRGHLLLKQGKLDEAEDDFKKVLKSNPSENEEKEAQSQLIKSDEMQ 144 (450)
T ss_dssp ------HHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTSCCCHHHHHHHHHHHHHHHHHH
T ss_pred ------HHCCCHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCChhhHHHHHHHHHHHHHH
Confidence 4567789999999999999999999999999999999999999999999999999988 776655
Q ss_pred -----HHHHHHcCCHHHHHHHHHHHHhhCCCChHHHHHHHHHHHhhhcccccccccchhhhhHHHhcCCHHHHHHHHHHH
Q 012143 207 -----GIAYFQSGDMEQSAKCFQDLILKDQNHPAALINYAALLLCKYGSVLAGAGANTGEGACLDQASAVNVAKECLLAA 281 (470)
Q Consensus 207 -----a~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~ 281 (470)
|.++...|++++|+..|++++...|.+..++..++.++. ..|++++|+.+|+++
T Consensus 145 ~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~---------------------~~g~~~~A~~~~~~~ 203 (450)
T 2y4t_A 145 RLRSQALNAFGSGDYTAAIAFLDKILEVCVWDAELRELRAECFI---------------------KEGEPRKAISDLKAA 203 (450)
T ss_dssp HHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHH---------------------HTTCGGGGHHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHH---------------------HCCCHHHHHHHHHHH
Confidence 666999999999999999999999999999999888887 799999999999999
Q ss_pred HhcCCCCHHHHHHHHHHHHHcCChhHHHHHHHHHHhcCCCcccHHHHHHHHHHHHhhhccCchHHhhhhHHHHHHHhhcC
Q 012143 282 LKADPKAAHIWANLANAYYLTGDHRSSGKCLEKAAKLEPNCMSTRYAVAVSRIKDAERSQEPTEQLSWAGNEMASILREG 361 (470)
Q Consensus 282 ~~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~p~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 361 (470)
++.+|+++.++..+|.++...|++++|+..|++++...|++...+..+....
T Consensus 204 ~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~~~~~~---------------------------- 255 (450)
T 2y4t_A 204 SKLKNDNTEAFYKISTLYYQLGDHELSLSEVRECLKLDQDHKRCFAHYKQVK---------------------------- 255 (450)
T ss_dssp HHHHCSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHH----------------------------
T ss_pred HHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCChHHHHHHHHHHH----------------------------
Confidence 9999999999999999999999999999999999999999876655443211
Q ss_pred CCCCCCcHHHHHHHHHHHhccccHHHHHHHHHHHhc--chh----hhhHhhHHHHHHHhccHHHHHHHHHHHHhcCCCcH
Q 012143 362 DPVQIEPPIAWAGFAAVQKTHHEVAAAFETEENELS--KME----ECAGAGESAFLDQASAVNVAKECLLAALKADPKAA 435 (470)
Q Consensus 362 ~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~--~~~----~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~p~~~ 435 (470)
....+..+|.++...|++++|+..+.+.+. |.. ...+..+|.++...|++++|+..++++++.+|+++
T Consensus 256 ------~~~~~~~~~~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~p~~~ 329 (450)
T 2y4t_A 256 ------KLNKLIESAEELIRDGRYTDATSKYESVMKTEPSIAEYTVRSKERICHCFSKDEKPVEAIRVCSEVLQMEPDNV 329 (450)
T ss_dssp ------HHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCCSSHHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHCTTCH
T ss_pred ------HHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCcccH
Confidence 112456779999999999999999999765 333 23678999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHcCChHHHHHHHHHHHHhhccC
Q 012143 436 HIWANLANAYYLTGDHRSSGKCLEKVLMVYCSS 468 (470)
Q Consensus 436 ~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~ 468 (470)
.+|..+|.++...|++++|+.+|++++++.|+.
T Consensus 330 ~~~~~l~~~~~~~~~~~~A~~~~~~al~~~p~~ 362 (450)
T 2y4t_A 330 NALKDRAEAYLIEEMYDEAIQDYETAQEHNEND 362 (450)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHTTSSSC
T ss_pred HHHHHHHHHHHHhcCHHHHHHHHHHHHHhCcch
Confidence 999999999999999999999999999987753
|
| >2xpi_A Anaphase-promoting complex subunit CUT9; cell cycle, TPR, ubiquitin ligase; 2.60A {Schizosaccharomyces pombe} | Back alignment and structure |
|---|
Probab=100.00 E-value=4.4e-36 Score=293.24 Aligned_cols=405 Identities=12% Similarity=0.046 Sum_probs=336.5
Q ss_pred hhhhhhhhhhhHHHHHHHHHHHHhcCCCCcchhhhcccchhhhhcChhhHHHHHHHHHHhCCCChhHHHHHHHHHHHhCC
Q 012143 11 EGKKINKLGKCRSRISSKMDSALEFGVDADGDQSGLGTSSSSREEKVSSLKTGLVHVARKMPKNAHAHFLLGLMYQRLGQ 90 (470)
Q Consensus 11 ~~~~~~~~g~~~~a~~~~~~~~l~~~p~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~l~~~~~~~g~ 90 (470)
.+..+.+.|++++|+ ..+.+++...|++ ..++.+|.+ +...|++++|...|++++.. |.++.++..+|.+|...|+
T Consensus 90 ~~~~~~~~g~~~~A~-~~~~~~~~~~p~~-~~~~~l~~~-~~~~g~~~~A~~~~~~~~~~-~~~~~~~~~l~~~~~~~g~ 165 (597)
T 2xpi_A 90 WRHDALMQQQYKCAA-FVGEKVLDITGNP-NDAFWLAQV-YCCTGDYARAKCLLTKEDLY-NRSSACRYLAAFCLVKLYD 165 (597)
T ss_dssp HHHHHHHTTCHHHHH-HHHHHHHHHHCCH-HHHHHHHHH-HHHTTCHHHHHHHHHHTCGG-GTCHHHHHHHHHHHHHTTC
T ss_pred HHHHHHHccCchHHH-HHHHHHHhhCCCc-hHHHHHHHH-HHHcCcHHHHHHHHHHHhcc-ccchhHHHHHHHHHHHHhh
Confidence 455677889999999 9999999999965 678889999 99999999999999998754 7789999999999999999
Q ss_pred hhHHHHHHHHHHHHHhhhhccc-------chhhhHHHHHHhhhccccccccCCCccccccCcccHHHHHHHHHHhhhcCc
Q 012143 91 PLKAVSSYEKAEEILLRCEADI-------ARPELLSLVQIHHAQCLLPESSGDNSLDKELEPEELEEILSKLKESMQSDT 163 (470)
Q Consensus 91 ~~~A~~~~~~al~~~~~~~~~~-------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~p 163 (470)
+++|+..|++. .|...... ..........++..++.+ +.+.|++++|+..|+++++.+|
T Consensus 166 ~~~A~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~-----------~~~~g~~~~A~~~~~~~~~~~p 231 (597)
T 2xpi_A 166 WQGALNLLGET---NPFRKDEKNANKLLMQDGGIKLEASMCYLRGQV-----------YTNLSNFDRAKECYKEALMVDA 231 (597)
T ss_dssp HHHHHHHHCSS---CTTC----------CCCSSCCHHHHHHHHHHHH-----------HHHTTCHHHHHHHHHHHHHHCT
T ss_pred HHHHHHHHhcc---CCccccccccccccccccccchhHHHHHHHHHH-----------HHHcCCHHHHHHHHHHHHHhCc
Confidence 99999999863 22210000 000001123344555544 3466778999999999999999
Q ss_pred cchHHHHHHHH--------------------------------------HHHHcCChHHHHHHHHHHhhcCCCChHHHHH
Q 012143 164 RQAVVWNTLGL--------------------------------------ILLKSGRLQSSISVLSSLLAVDPNNCDCIGN 205 (470)
Q Consensus 164 ~~~~~~~~l~~--------------------------------------~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~ 205 (470)
+++.++..++. .|...|++++|+..|+++++. |.+..++..
T Consensus 232 ~~~~~~~~l~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~-~~~~~~~~~ 310 (597)
T 2xpi_A 232 KCYEAFDQLVSNHLLTADEEWDLVLKLNYSTYSKEDAAFLRSLYMLKLNKTSHEDELRRAEDYLSSINGL-EKSSDLLLC 310 (597)
T ss_dssp TCHHHHHHHHHTTCSCHHHHHHHHHHSCTHHHHGGGHHHHHHHHHTTSCTTTTHHHHHHHHHHHHTSTTG-GGCHHHHHH
T ss_pred hhhHHHHHHHHhhcccchhHHHHHHhcCCcccccchHHHHHHHHHHHHHHHcCcchHHHHHHHHHHhhcC-CchHHHHHH
Confidence 99888777654 344678999999999999988 788999999
Q ss_pred HHHHHHHcCCHHHHHHHHHHHHhhCCCChHHHHHHHHHHHhhhcccccccccchhhhhHHHhcCCHHHHHHHHHHHHhcC
Q 012143 206 LGIAYFQSGDMEQSAKCFQDLILKDQNHPAALINYAALLLCKYGSVLAGAGANTGEGACLDQASAVNVAKECLLAALKAD 285 (470)
Q Consensus 206 la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~ 285 (470)
+|.++...|++++|+..|++++..+|.+..++..++.++. ..|++++|+..++++++..
T Consensus 311 l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~---------------------~~g~~~~A~~~~~~~~~~~ 369 (597)
T 2xpi_A 311 KADTLFVRSRFIDVLAITTKILEIDPYNLDVYPLHLASLH---------------------ESGEKNKLYLISNDLVDRH 369 (597)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHCTTCCTTHHHHHHHHH---------------------HHTCHHHHHHHHHHHHHHC
T ss_pred HHHHHHHhcCHHHHHHHHHHHHHcCcccHHHHHHHHHHHH---------------------HhCCHHHHHHHHHHHHhhC
Confidence 9999999999999999999999999999999988888877 7999999999999999999
Q ss_pred CCCHHHHHHHHHHHHHcCChhHHHHHHHHHHhcCCCcccHHHHHHHHHHHHhhhccCchHHhhhhHHHHHHHhhcCCCCC
Q 012143 286 PKAAHIWANLANAYYLTGDHRSSGKCLEKAAKLEPNCMSTRYAVAVSRIKDAERSQEPTEQLSWAGNEMASILREGDPVQ 365 (470)
Q Consensus 286 p~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~p~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 365 (470)
|+++.++..+|.+|...|++++|+..|+++++..|.+...+..++...... .....+...+...+. ..
T Consensus 370 ~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~--------g~~~~A~~~~~~~~~----~~ 437 (597)
T 2xpi_A 370 PEKAVTWLAVGIYYLCVNKISEARRYFSKSSTMDPQFGPAWIGFAHSFAIE--------GEHDQAISAYTTAAR----LF 437 (597)
T ss_dssp TTSHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHH--------TCHHHHHHHHHHHHH----TT
T ss_pred cccHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHc--------CCHHHHHHHHHHHHH----hC
Confidence 999999999999999999999999999999999999988888776644331 112222222333332 23
Q ss_pred CCcHHHHHHHHHHHhccccHHHHHHHHHHHhc--chhhhhHhhHHHHHHHhccHHHHHHHHHHHHhc------CCCc-HH
Q 012143 366 IEPPIAWAGFAAVQKTHHEVAAAFETEENELS--KMEECAGAGESAFLDQASAVNVAKECLLAALKA------DPKA-AH 436 (470)
Q Consensus 366 ~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~--~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~------~p~~-~~ 436 (470)
|.++.+|..++.++...|++++|+..+.+.+. +.....+..+|.++...|++++|+..|+++++. +|++ ..
T Consensus 438 ~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~p~~~~~ 517 (597)
T 2xpi_A 438 QGTHLPYLFLGMQHMQLGNILLANEYLQSSYALFQYDPLLLNELGVVAFNKSDMQTAINHFQNALLLVKKTQSNEKPWAA 517 (597)
T ss_dssp TTCSHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCSGGGHH
T ss_pred ccchHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHhCCHHHHHHHHHHHHHhhhccccchhhHHH
Confidence 45678999999999999999999999999654 666788999999999999999999999999998 6765 78
Q ss_pred HHHHHHHHHHHcCChHHHHHHHHHHHHhhcc
Q 012143 437 IWANLANAYYLTGDHRSSGKCLEKVLMVYCS 467 (470)
Q Consensus 437 ~~~~la~~~~~~g~~~~A~~~~~~al~~~~~ 467 (470)
+|..+|.++...|++++|+..|++++++.|.
T Consensus 518 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~ 548 (597)
T 2xpi_A 518 TWANLGHAYRKLKMYDAAIDALNQGLLLSTN 548 (597)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHSSC
T ss_pred HHHHHHHHHHHhcCHHHHHHHHHHHHHhCCC
Confidence 9999999999999999999999999998764
|
| >4g1t_A Interferon-induced protein with tetratricopeptide 2; ISG, all alpha helix, antivirus, antiviral protein; 2.80A {Homo sapiens} | Back alignment and structure |
|---|
Probab=100.00 E-value=2.6e-35 Score=279.28 Aligned_cols=382 Identities=11% Similarity=0.028 Sum_probs=286.8
Q ss_pred hhhhhhhhhhhHHHHHHHHHHHHhc---------CCCCcchhhhcccchhhhhcChhhHHHHHHHHHHhC--------CC
Q 012143 11 EGKKINKLGKCRSRISSKMDSALEF---------GVDADGDQSGLGTSSSSREEKVSSLKTGLVHVARKM--------PK 73 (470)
Q Consensus 11 ~~~~~~~~g~~~~a~~~~~~~~l~~---------~p~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~--------p~ 73 (470)
-|..+..+|++++|+ ..+++++++ +|.....|.++|.+ +...|++++|...+++++++. +.
T Consensus 57 Lg~~~~~~G~~~eAl-~~~~kAl~~~~~~~~~~~~~~~~~~~~nla~~-y~~~g~~~~A~~~~~ka~~i~~~~~~~~~~~ 134 (472)
T 4g1t_A 57 LAYLKHLKGQNEAAL-ECLRKAEELIQQEHADQAEIRSLVTWGNYAWV-YYHMGRLSDVQIYVDKVKHVCEKFSSPYRIE 134 (472)
T ss_dssp HHHHHHHTTCHHHHH-HHHHHHHHHHHHHSGGGCTTTTHHHHHHHHHH-HHHTTCHHHHHHHHHHHHHHHHHSCCSSCCC
T ss_pred HHHHHHHCCCHHHHH-HHHHHHHHHHHhcCccccchHHHHHHHHHHHH-HHHcCChHHHHHHHHHHHHHhHhcccccchh
Confidence 366778899999999 999999886 56667788999999 999999999999999998763 45
Q ss_pred ChhHHHHHHHHHHHhC--ChhHHHHHHHHHHHHHhhhhcccchhhhHHHHHHhhhccccccccCCCccccccCcccHHHH
Q 012143 74 NAHAHFLLGLMYQRLG--QPLKAVSSYEKAEEILLRCEADIARPELLSLVQIHHAQCLLPESSGDNSLDKELEPEELEEI 151 (470)
Q Consensus 74 ~~~~~~~l~~~~~~~g--~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A 151 (470)
.+.++..+|.++...| ++++|+.+|+++++++|++. .. +..++.++..++ ..++.++|
T Consensus 135 ~~~~~~~~g~~~~~~~~~~y~~A~~~~~kal~~~p~~~------~~------~~~~~~~~~~l~--------~~~~~~~a 194 (472)
T 4g1t_A 135 SPELDCEEGWTRLKCGGNQNERAKVCFEKALEKKPKNP------EF------TSGLAIASYRLD--------NWPPSQNA 194 (472)
T ss_dssp CHHHHHHHHHHHHHHCTTHHHHHHHHHHHHHHHSTTCH------HH------HHHHHHHHHHHH--------HSCCCCCT
T ss_pred hHHHHHHHHHHHHHHccccHHHHHHHHHHHHHhCCCCH------HH------HHHHHHHHHHhc--------CchHHHHH
Confidence 6778888998887765 69999999999999987742 21 222222211111 12445789
Q ss_pred HHHHHHhhhcCccchHHHHHHHHHHHH----cCChHHHHHHHHHHhhcCCCChHHHHHHHHHHHHcCCHHHHHHHHHHHH
Q 012143 152 LSKLKESMQSDTRQAVVWNTLGLILLK----SGRLQSSISVLSSLLAVDPNNCDCIGNLGIAYFQSGDMEQSAKCFQDLI 227 (470)
Q Consensus 152 ~~~~~~~~~~~p~~~~~~~~l~~~~~~----~~~~~~A~~~~~~a~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~l 227 (470)
+..++++++.+|+++.++..+|..+.. .|++++|+.++++++..+|..+.++..+|.+|...|++++|+..|++++
T Consensus 195 l~~~~~al~l~p~~~~~~~~l~~~~~~~~~~~~~~~~a~~~~~~al~~~~~~~~~~~~lg~~~~~~~~~~~A~~~~~~al 274 (472)
T 4g1t_A 195 IDPLRQAIRLNPDNQYLKVLLALKLHKMREEGEEEGEGEKLVEEALEKAPGVTDVLRSAAKFYRRKDEPDKAIELLKKAL 274 (472)
T ss_dssp HHHHHHHHHHCSSCHHHHHHHHHHHHHCC------CHHHHHHHHHHHHCSSCHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHHHhhcCCcchHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHhCccHHHHHHHHHHHHHHcCchHHHHHHHHHHH
Confidence 999999999999999999998877665 4678999999999999999999999999999999999999999999999
Q ss_pred hhCCCChHHHHHHHHHHHhhhcccccccccchhhhhHHHhcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCChhH
Q 012143 228 LKDQNHPAALINYAALLLCKYGSVLAGAGANTGEGACLDQASAVNVAKECLLAALKADPKAAHIWANLANAYYLTGDHRS 307 (470)
Q Consensus 228 ~~~p~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~la~~~~~~g~~~~ 307 (470)
+.+|+++.++..+|.++..+...... ......+......+.+++|+..++++++.+|.++.++..+|.++...|++++
T Consensus 275 ~~~p~~~~~~~~lg~~y~~~~~~~~~--~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~lg~~~~~~~~~~~ 352 (472)
T 4g1t_A 275 EYIPNNAYLHCQIGCCYRAKVFQVMN--LRENGMYGKRKLLELIGHAVAHLKKADEANDNLFRVCSILASLHALADQYEE 352 (472)
T ss_dssp HHSTTCHHHHHHHHHHHHHHHHHHHH--C------CHHHHHHHHHHHHHHHHHHHHHCTTTCCCHHHHHHHHHHTTCHHH
T ss_pred HhCCChHHHHHHHHHHHHHHHHHhhh--HHHHHHHHHHHHHhhHHHHHHHHHHHhhcCCchhhhhhhHHHHHHHhccHHH
Confidence 99999999999999988643211111 1111223333445568899999999999999999999999999999999999
Q ss_pred HHHHHHHHHhcCCCcccHHHHHHHHHHHHhhhccCchHHhhhhHHHHHHHhhcCCCCCCCcHHHHHHHHHH-HhccccHH
Q 012143 308 SGKCLEKAAKLEPNCMSTRYAVAVSRIKDAERSQEPTEQLSWAGNEMASILREGDPVQIEPPIAWAGFAAV-QKTHHEVA 386 (470)
Q Consensus 308 A~~~~~~a~~~~p~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~-~~~~~~~~ 386 (470)
|+.+|++++...|++.... .++..+|.+ ....|+++
T Consensus 353 A~~~~~kaL~~~~~~~~~~-------------------------------------------~~~~~~~~~~~~~~~~~~ 389 (472)
T 4g1t_A 353 AEYYFQKEFSKELTPVAKQ-------------------------------------------LLHLRYGNFQLYQMKCED 389 (472)
T ss_dssp HHHHHHHHHHSCCCHHHHH-------------------------------------------HHHHHHHHHHHHTSSCHH
T ss_pred HHHHHHHHHhcCCCChHHH-------------------------------------------HHHHHHHHHHHHHCCCHH
Confidence 9999999999988743211 133344433 45678999
Q ss_pred HHHHHHHHHhcchhhhhHhhHHHHHHHhccHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHcCChHHHHHHHHHHHHhhc
Q 012143 387 AAFETEENELSKMEECAGAGESAFLDQASAVNVAKECLLAALKADPKAAHIWANLANAYYLTGDHRSSGKCLEKVLMVYC 466 (470)
Q Consensus 387 ~A~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~ 466 (470)
+|+..|.+++.-.+... ...+....+...+++++..+|+++.+|..+|.+|...|++++|+++|++|+++-+
T Consensus 390 ~Ai~~y~kal~i~~~~~--------~~~~~~~~l~~~~~~~l~~~p~~~~~~~~LG~~~~~~g~~~~A~~~y~kALe~~~ 461 (472)
T 4g1t_A 390 KAIHHFIEGVKINQKSR--------EKEKMKDKLQKIAKMRLSKNGADSEALHVLAFLQELNEKMQQADEDSERGLESGS 461 (472)
T ss_dssp HHHHHHHHHHHSCCCCH--------HHHHHHHHHHHHHHHHHHHCC-CTTHHHHHHHHHHHHHHCC--------------
T ss_pred HHHHHHHHHHhcCcccH--------HHHHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCC
Confidence 99999999765333221 1223346667788999999999999999999999999999999999999999765
Q ss_pred c
Q 012143 467 S 467 (470)
Q Consensus 467 ~ 467 (470)
.
T Consensus 462 ~ 462 (472)
T 4g1t_A 462 L 462 (472)
T ss_dssp -
T ss_pred C
Confidence 4
|
| >3hym_B Cell division cycle protein 16 homolog; APC, anaphase promoting complex, cell cycle, mitosis, cyclosome, TPR, ubiquitin, ubiquitin ligase, twinning; 2.80A {Homo sapiens} | Back alignment and structure |
|---|
Probab=100.00 E-value=1.2e-33 Score=254.67 Aligned_cols=249 Identities=11% Similarity=0.097 Sum_probs=218.5
Q ss_pred ccHHHHHHHHHHhhhcCccchHHHHHHHHHHHHcC-ChHHHHHHHHHHhhcCCCChHHHHHHHHHHHHcCCHHHHHHHHH
Q 012143 146 EELEEILSKLKESMQSDTRQAVVWNTLGLILLKSG-RLQSSISVLSSLLAVDPNNCDCIGNLGIAYFQSGDMEQSAKCFQ 224 (470)
Q Consensus 146 ~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~~-~~~~A~~~~~~a~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~ 224 (470)
|++++|+..+++++..+|+++.++..+|.++...| ++++|+.+|+++++.+|.++.++..+|.++...|++++|+..|+
T Consensus 70 ~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~ 149 (330)
T 3hym_B 70 NKANELFYLSHKLVDLYPSNPVSWFAVGCYYLMVGHKNEHARRYLSKATTLEKTYGPAWIAYGHSFAVESEHDQAMAAYF 149 (330)
T ss_dssp TCHHHHHHHHHHHHHHCTTSTHHHHHHHHHHHHSCSCHHHHHHHHHHHHTTCTTCTHHHHHHHHHHHHHTCHHHHHHHHH
T ss_pred hhHHHHHHHHHHHHHhCcCCHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHhCCccHHHHHHHHHHHHHccCHHHHHHHHH
Confidence 33445555555555557888899999999999999 99999999999999999999999999999999999999999999
Q ss_pred HHHhhCCCChHHHHHHHHHHHhhhcccccccccchhhhhHHHhcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCC
Q 012143 225 DLILKDQNHPAALINYAALLLCKYGSVLAGAGANTGEGACLDQASAVNVAKECLLAALKADPKAAHIWANLANAYYLTGD 304 (470)
Q Consensus 225 ~~l~~~p~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~la~~~~~~g~ 304 (470)
+++...|++...+..+|.++. ..|++++|+.+++++++..|+++.++..+|.++...|+
T Consensus 150 ~a~~~~~~~~~~~~~l~~~~~---------------------~~~~~~~A~~~~~~al~~~~~~~~~~~~l~~~~~~~~~ 208 (330)
T 3hym_B 150 TAAQLMKGCHLPMLYIGLEYG---------------------LTNNSKLAERFFSQALSIAPEDPFVMHEVGVVAFQNGE 208 (330)
T ss_dssp HHHHHTTTCSHHHHHHHHHHH---------------------HTTCHHHHHHHHHHHHTTCTTCHHHHHHHHHHHHHTTC
T ss_pred HHHHhccccHHHHHHHHHHHH---------------------HHhhHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHccc
Confidence 999999999999888888877 79999999999999999999999999999999999999
Q ss_pred hhHHHHHHHHHHhcCCCcccHHHHHHHHHHHHhhhccCchHHhhhhHHHHHHHhhcCCCCCCCcHHHHHHHHHHHhcccc
Q 012143 305 HRSSGKCLEKAAKLEPNCMSTRYAVAVSRIKDAERSQEPTEQLSWAGNEMASILREGDPVQIEPPIAWAGFAAVQKTHHE 384 (470)
Q Consensus 305 ~~~A~~~~~~a~~~~p~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~ 384 (470)
+++|+..+++++...|.... ....+..+.++..+|.++...|+
T Consensus 209 ~~~A~~~~~~a~~~~~~~~~-------------------------------------~~~~~~~~~~~~~la~~~~~~g~ 251 (330)
T 3hym_B 209 WKTAEKWFLDALEKIKAIGN-------------------------------------EVTVDKWEPLLNNLGHVCRKLKK 251 (330)
T ss_dssp HHHHHHHHHHHHHHHTTTSC-------------------------------------SCTTTTCCHHHHHHHHHHHHTTC
T ss_pred HHHHHHHHHHHHHHhhhccc-------------------------------------cccccHHHHHHHHHHHHHHHhcC
Confidence 99999999999998765321 01112345689999999999999
Q ss_pred HHHHHHHHHHHhc--chhhhhHhhHHHHHHHhccHHHHHHHHHHHHhcCCCcHHHHHHHHHHH-HHcCChH
Q 012143 385 VAAAFETEENELS--KMEECAGAGESAFLDQASAVNVAKECLLAALKADPKAAHIWANLANAY-YLTGDHR 452 (470)
Q Consensus 385 ~~~A~~~~~~~~~--~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~-~~~g~~~ 452 (470)
+++|+..+.+.+. |....++..+|.++...|++++|+.+|+++++++|+++.++..+|.++ ...|+.+
T Consensus 252 ~~~A~~~~~~a~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~g~~~ 322 (330)
T 3hym_B 252 YAEALDYHRQALVLIPQNASTYSAIGYIHSLMGNFENAVDYFHTALGLRRDDTFSVTMLGHCIEMYIGDSE 322 (330)
T ss_dssp HHHHHHHHHHHHHHSTTCSHHHHHHHHHHHHHTCHHHHHHHHHTTTTTCSCCHHHHHHHHHHHHTTTTC--
T ss_pred HHHHHHHHHHHHhhCccchHHHHHHHHHHHHhccHHHHHHHHHHHHccCCCchHHHHHHHHHHHHHhCchh
Confidence 9999999999654 666788999999999999999999999999999999999999999998 5666654
|
| >2gw1_A Mitochondrial precursor proteins import receptor; TPR, protein transport; 3.00A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=100.00 E-value=1.3e-33 Score=270.55 Aligned_cols=354 Identities=15% Similarity=0.063 Sum_probs=310.5
Q ss_pred hhhhhhhhhhhHHHHHHHHHHHHhcCCCCcchhhhcccchhhhhcChhhHHHHHHHHHHhCCCC----------------
Q 012143 11 EGKKINKLGKCRSRISSKMDSALEFGVDADGDQSGLGTSSSSREEKVSSLKTGLVHVARKMPKN---------------- 74 (470)
Q Consensus 11 ~~~~~~~~g~~~~a~~~~~~~~l~~~p~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~p~~---------------- 74 (470)
-|..+...|++++|+ ..++++++.+|++..+|+.+|.+ +...|++++|...|++++..+|.+
T Consensus 45 la~~~~~~g~~~~A~-~~~~~al~~~p~~~~~~~~l~~~-~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 122 (514)
T 2gw1_A 45 LSACYVSVGDLKKVV-EMSTKALELKPDYSKVLLRRASA-NEGLGKFADAMFDLSVLSLNGDFNDASIEPMLERNLNKQA 122 (514)
T ss_dssp HHHHHHHHTCHHHHH-HHHHHHHHHCSCCHHHHHHHHHH-HHHTTCHHHHHHHHHHHHHSSSCCGGGTHHHHHHHHHHHH
T ss_pred HHHHHHHHhhHHHHH-HHHHHHhccChHHHHHHHHHHHH-HHHHhhHHHHHHHHHHHHhcCCCccchHHHHHHHHHHHHH
Confidence 577888999999999 99999999999999999999999 999999999999999999888633
Q ss_pred ---------------------------------------------------------------hhHHHHHHHHHHH---h
Q 012143 75 ---------------------------------------------------------------AHAHFLLGLMYQR---L 88 (470)
Q Consensus 75 ---------------------------------------------------------------~~~~~~l~~~~~~---~ 88 (470)
+.+++.+|.++.. .
T Consensus 123 ~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 202 (514)
T 2gw1_A 123 MSKLKEKFGDIDTATATPTELSTQPAKERKDKQENLPSVTSMASFFGIFKPELTFANYDESNEADKELMNGLSNLYKRSP 202 (514)
T ss_dssp HHHHTTC---------------------------CCCCHHHHHHHHTTSCCCCCCSSCCSSCHHHHHHHHHHHHHSSCCT
T ss_pred HHHHHHHHHHHHHHHHhhhhccCChhhHHHhhccCCchhHHHHHHHhhcCHHHHHHHhcCCcHHHHHHHHHHHHHHhhhh
Confidence 6677888888886 8
Q ss_pred CChhHHHHHHHHHHH-----H--HhhhhcccchhhhHHHHHHhhhccccccccCCCccccccCcccHHHHHHHHHHhhhc
Q 012143 89 GQPLKAVSSYEKAEE-----I--LLRCEADIARPELLSLVQIHHAQCLLPESSGDNSLDKELEPEELEEILSKLKESMQS 161 (470)
Q Consensus 89 g~~~~A~~~~~~al~-----~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~ 161 (470)
|++++|+..|+++++ . .|.+. ........++..++.++ ...|++++|+..+++++..
T Consensus 203 ~~~~~A~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~-----------~~~~~~~~A~~~~~~~l~~ 266 (514)
T 2gw1_A 203 ESYDKADESFTKAARLFEEQLDKNNEDE-----KLKEKLAISLEHTGIFK-----------FLKNDPLGAHEDIKKAIEL 266 (514)
T ss_dssp THHHHHHHHHHHHHHHHHHHTTTSTTCH-----HHHHHHHHHHHHHHHHH-----------HHSSCHHHHHHHHHHHHHH
T ss_pred ccHHHHHHHHHHHHHHhhhhhccCcccc-----ccChHHHHHHHHHHHHH-----------HHCCCHHHHHHHHHHHHhh
Confidence 999999999999998 3 22211 00112234455555543 4567789999999999999
Q ss_pred CccchHHHHHHHHHHHHcCChHHHHHHHHHHhhcCCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCChHHHHHHH
Q 012143 162 DTRQAVVWNTLGLILLKSGRLQSSISVLSSLLAVDPNNCDCIGNLGIAYFQSGDMEQSAKCFQDLILKDQNHPAALINYA 241 (470)
Q Consensus 162 ~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~l~ 241 (470)
+|. +.++..+|.++...|++++|+..+++++..+|.++.++..+|.++...|++++|+..|++++...|.+..++..++
T Consensus 267 ~~~-~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~ 345 (514)
T 2gw1_A 267 FPR-VNSYIYMALIMADRNDSTEYYNYFDKALKLDSNNSSVYYHRGQMNFILQNYDQAGKDFDKAKELDPENIFPYIQLA 345 (514)
T ss_dssp CCC-HHHHHHHHHHHHTSSCCTTGGGHHHHHHTTCTTCTHHHHHHHHHHHHTTCTTHHHHHHHHHHHTCSSCSHHHHHHH
T ss_pred Ccc-HHHHHHHHHHHHHCCCHHHHHHHHHHHhhcCcCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhChhhHHHHHHHH
Confidence 999 9999999999999999999999999999999999999999999999999999999999999999999999998888
Q ss_pred HHHHhhhcccccccccchhhhhHHHhcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCChhHHHHHHHHHHhcCCC
Q 012143 242 ALLLCKYGSVLAGAGANTGEGACLDQASAVNVAKECLLAALKADPKAAHIWANLANAYYLTGDHRSSGKCLEKAAKLEPN 321 (470)
Q Consensus 242 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~p~ 321 (470)
.++. ..|++++|+..++++++..|+++.++..+|.++...|++++|+..|++++...|+
T Consensus 346 ~~~~---------------------~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~ 404 (514)
T 2gw1_A 346 CLAY---------------------RENKFDDCETLFSEAKRKFPEAPEVPNFFAEILTDKNDFDKALKQYDLAIELENK 404 (514)
T ss_dssp HHTT---------------------TTTCHHHHHHHHHHHHHHSTTCSHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHT
T ss_pred HHHH---------------------HcCCHHHHHHHHHHHHHHcccCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhhhc
Confidence 8876 7999999999999999999999999999999999999999999999999998887
Q ss_pred cccHHHHHHHHHHHHhhhccCchHHhhhhHHHHHHHhhcCCCCCCCcHHHHHHHHHHHhc---cccHHHHHHHHHHHhc-
Q 012143 322 CMSTRYAVAVSRIKDAERSQEPTEQLSWAGNEMASILREGDPVQIEPPIAWAGFAAVQKT---HHEVAAAFETEENELS- 397 (470)
Q Consensus 322 ~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~---~~~~~~A~~~~~~~~~- 397 (470)
+.... ....++..+|.++.. .|++++|+..+.+.+.
T Consensus 405 ~~~~~----------------------------------------~~~~~~~~l~~~~~~~~~~~~~~~A~~~~~~a~~~ 444 (514)
T 2gw1_A 405 LDGIY----------------------------------------VGIAPLVGKATLLTRNPTVENFIEATNLLEKASKL 444 (514)
T ss_dssp SSSCS----------------------------------------SCSHHHHHHHHHHHTSCCTTHHHHHHHHHHHHHHH
T ss_pred cchHH----------------------------------------HHHHHHHHHHHHHhhhhhcCCHHHHHHHHHHHHHh
Confidence 54210 112478889999999 9999999999999654
Q ss_pred -chhhhhHhhHHHHHHHhccHHHHHHHHHHHHhcCCCcHHHHHHHHHH
Q 012143 398 -KMEECAGAGESAFLDQASAVNVAKECLLAALKADPKAAHIWANLANA 444 (470)
Q Consensus 398 -~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~ 444 (470)
|....++..+|.++...|++++|+..|+++++++|+++.++..+...
T Consensus 445 ~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~ 492 (514)
T 2gw1_A 445 DPRSEQAKIGLAQMKLQQEDIDEAITLFEESADLARTMEEKLQAITFA 492 (514)
T ss_dssp CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSSHHHHHHHHHHH
T ss_pred CcccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhccccHHHHHHHHHH
Confidence 66668899999999999999999999999999999999988777544
|
| >3fp2_A TPR repeat-containing protein YHR117W; TOM71, mitochondria translocation, allosteric REG phosphoprotein, TPR repeat, ATP-binding; 1.98A {Saccharomyces cerevisiae} PDB: 3fp3_A 3fp4_A 3lca_A | Back alignment and structure |
|---|
Probab=100.00 E-value=5.8e-34 Score=274.63 Aligned_cols=349 Identities=14% Similarity=0.039 Sum_probs=289.0
Q ss_pred hhhhhhhhhhhhHHHHHHHHHHHHhcCCCCcchhhhcccchhhhhcChhhHHHHHHHHHHhCCCChhHH-----------
Q 012143 10 VEGKKINKLGKCRSRISSKMDSALEFGVDADGDQSGLGTSSSSREEKVSSLKTGLVHVARKMPKNAHAH----------- 78 (470)
Q Consensus 10 ~~~~~~~~~g~~~~a~~~~~~~~l~~~p~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~----------- 78 (470)
.-|..+..+|++++|+ ..+.++++.+|++...++.+|.+ +...|++++|...|+ ++..+|+....+
T Consensus 64 ~la~~~~~~g~~~~A~-~~~~~al~~~p~~~~~~~~la~~-~~~~g~~~~A~~~~~-~~~~~~~~~~~~~~~~~~~~~~~ 140 (537)
T 3fp2_A 64 NISACYISTGDLEKVI-EFTTKALEIKPDHSKALLRRASA-NESLGNFTDAMFDLS-VLSLNGDFDGASIEPMLERNLNK 140 (537)
T ss_dssp HHHHHHHHHTCHHHHH-HHHHHHHHHCTTCHHHHHHHHHH-HHHHTCHHHHHHHHH-HHC-----------CHHHHHHHH
T ss_pred HHHHHHHHcCCHHHHH-HHHHHHHhcCCchHHHHHHHHHH-HHHcCCHHHHHHHHH-HHhcCCCCChHHHHHHHHHHHHH
Confidence 3577889999999999 99999999999999999999999 999999999999996 777777654422
Q ss_pred ---------------------------------------------------------HHH--------HHHHHHhCChhH
Q 012143 79 ---------------------------------------------------------FLL--------GLMYQRLGQPLK 93 (470)
Q Consensus 79 ---------------------------------------------------------~~l--------~~~~~~~g~~~~ 93 (470)
..+ +......|++++
T Consensus 141 ~a~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~a~~~~~~ 220 (537)
T 3fp2_A 141 QAMKVLNENLSKDEGRGSQVLPSNTSLASFFGIFDSHLEVSSVNTSSNYDTAYALLSDALQRLYSATDEGYLVANDLLTK 220 (537)
T ss_dssp HHHHHHHHHCC-------CCCCCHHHHHHHHHTSCHHHHHHTSCCCCSSCSSHHHHHHHHHHHHTCSHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhCccccccccchHhHHHHHHHhcChHHHHHHHhhccccccHHHHHHHHHHHHHHhhhhhhHHHHHHHHH
Confidence 111 222223358899
Q ss_pred HHHHHHHHHHHHhhhhcccchhhhHHHHHHhhhccccccccCCCccccccCcccHHHHHHHHHHhhhcCccchHHHHHHH
Q 012143 94 AVSSYEKAEEILLRCEADIARPELLSLVQIHHAQCLLPESSGDNSLDKELEPEELEEILSKLKESMQSDTRQAVVWNTLG 173 (470)
Q Consensus 94 A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~l~ 173 (470)
|+..|+++++..|++.. .....+.++..++.+ +...|++++|+..+++++..+|+ +.++..+|
T Consensus 221 A~~~~~~~l~~~p~~~~-----~~~~~~~~~~~~g~~-----------~~~~~~~~~A~~~~~~~~~~~~~-~~~~~~l~ 283 (537)
T 3fp2_A 221 STDMYHSLLSANTVDDP-----LRENAALALCYTGIF-----------HFLKNNLLDAQVLLQESINLHPT-PNSYIFLA 283 (537)
T ss_dssp HHHHHHHHHC--CCCHH-----HHHHHHHHHHHHHHH-----------HHHTTCHHHHHHHHHHHHHHCCC-HHHHHHHH
T ss_pred HHHHHHHHHHHCCCcch-----hhHHHHHHHHHHHHH-----------HHhcccHHHHHHHHHHHHhcCCC-chHHHHHH
Confidence 99999999988776421 112223344444444 45667789999999999999999 99999999
Q ss_pred HHHHHcCChHHHHHHHHHHhhcCCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCChHHHHHHHHHHHhhhccccc
Q 012143 174 LILLKSGRLQSSISVLSSLLAVDPNNCDCIGNLGIAYFQSGDMEQSAKCFQDLILKDQNHPAALINYAALLLCKYGSVLA 253 (470)
Q Consensus 174 ~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~l~~~~~~~~~~~~~ 253 (470)
.++...|++++|+..|+++++.+|+++.++..+|.++...|++++|+..|++++..+|.++.++..++.++.
T Consensus 284 ~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~la~~~~-------- 355 (537)
T 3fp2_A 284 LTLADKENSQEFFKFFQKAVDLNPEYPPTYYHRGQMYFILQDYKNAKEDFQKAQSLNPENVYPYIQLACLLY-------- 355 (537)
T ss_dssp HHTCCSSCCHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCSHHHHHHHHHHH--------
T ss_pred HHHHHhcCHHHHHHHHHHHhccCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHH--------
Confidence 999999999999999999999999999999999999999999999999999999999999999999888887
Q ss_pred ccccchhhhhHHHhcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCChhHHHHHHHHHHhcCCCcccHHHHHHHHH
Q 012143 254 GAGANTGEGACLDQASAVNVAKECLLAALKADPKAAHIWANLANAYYLTGDHRSSGKCLEKAAKLEPNCMSTRYAVAVSR 333 (470)
Q Consensus 254 ~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~p~~~~~~~~l~~~~ 333 (470)
..|++++|+.+++++++..|+++.++..+|.++...|++++|+..|++++...|++...+..+
T Consensus 356 -------------~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~---- 418 (537)
T 3fp2_A 356 -------------KQGKFTESEAFFNETKLKFPTLPEVPTFFAEILTDRGDFDTAIKQYDIAKRLEEVQEKIHVGI---- 418 (537)
T ss_dssp -------------HTTCHHHHHHHHHHHHHHCTTCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHCSSCSSTT----
T ss_pred -------------HcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHhCCHHHHHHHHHHHHHcCCcchhhHHHH----
Confidence 799999999999999999999999999999999999999999999999999988766543322
Q ss_pred HHHhhhccCchHHhhhhHHHHHHHhhcCCCCCCCcHHHHHHHHHHHhcc----------ccHHHHHHHHHHHhc--chhh
Q 012143 334 IKDAERSQEPTEQLSWAGNEMASILREGDPVQIEPPIAWAGFAAVQKTH----------HEVAAAFETEENELS--KMEE 401 (470)
Q Consensus 334 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~----------~~~~~A~~~~~~~~~--~~~~ 401 (470)
..+..++.++... |++++|+..+.+.+. |...
T Consensus 419 ------------------------------------~~~~~~a~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~p~~~ 462 (537)
T 3fp2_A 419 ------------------------------------GPLIGKATILARQSSQDPTQLDEEKFNAAIKLLTKACELDPRSE 462 (537)
T ss_dssp ------------------------------------HHHHHHHHHHHHHHTC----CCHHHHHHHHHHHHHHHHHCTTCH
T ss_pred ------------------------------------HHHHHHHHHHHHHhhccchhhhHhHHHHHHHHHHHHHHhCCCCH
Confidence 2345566777777 999999999999654 6667
Q ss_pred hhHhhHHHHHHHhccHHHHHHHHHHHHhcCCCcHHHHH
Q 012143 402 CAGAGESAFLDQASAVNVAKECLLAALKADPKAAHIWA 439 (470)
Q Consensus 402 ~~~~~l~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~ 439 (470)
.++..+|.++...|++++|+.+|++++++.|+.+....
T Consensus 463 ~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~ 500 (537)
T 3fp2_A 463 QAKIGLAQLKLQMEKIDEAIELFEDSAILARTMDEKLQ 500 (537)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--CHHHHH
T ss_pred HHHHHHHHHHHHhccHHHHHHHHHHHHHhCCCcHHHHH
Confidence 88999999999999999999999999999999876644
|
| >1fch_A Peroxisomal targeting signal 1 receptor; protein-peptide complex, tetratricopeptide repeat, TPR, helical repeat, signaling protein; 2.20A {Homo sapiens} SCOP: a.118.8.1 PDB: 2j9q_A 3imz_B* 3r9a_B* 2c0m_A 2c0l_A | Back alignment and structure |
|---|
Probab=100.00 E-value=3.6e-33 Score=255.72 Aligned_cols=294 Identities=17% Similarity=0.172 Sum_probs=207.0
Q ss_pred hhhhcChhhHHH-HHHHHHHhCCCCh----hHHHHHHHHHHHhCChhHHHHHHHHHHHHHhhhhcccchhhhHHHHHHhh
Q 012143 51 SSREEKVSSLKT-GLVHVARKMPKNA----HAHFLLGLMYQRLGQPLKAVSSYEKAEEILLRCEADIARPELLSLVQIHH 125 (470)
Q Consensus 51 ~~~~~~~~~A~~-~~~~~l~~~p~~~----~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~ 125 (470)
+...|++++|.. .+++++...|.++ ..++.+|.++...|++++|+..|+++++.+|... .++.
T Consensus 35 ~~~~~~~~~a~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~p~~~------------~~~~ 102 (368)
T 1fch_A 35 HPWLSDYDDLTSATYDKGYQFEEENPLRDHPQPFEEGLRRLQEGDLPNAVLLFEAAVQQDPKHM------------EAWQ 102 (368)
T ss_dssp -----------CHHHHCCCCCCSSCTTTTCSSHHHHHHHHHHTTCHHHHHHHHHHHHHSCTTCH------------HHHH
T ss_pred hHHHHHHHHHHhhhhhHHHhcCCCCcccchHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCH------------HHHH
Confidence 444456677776 7777666666653 4567777777777777777777777776544321 1222
Q ss_pred hccccccccCCCccccccCcccHHHHHHHHHHhhhcCccchHHHHHHHHHHHHcCChHHHHHHHHHHhhcCCCChHHHH-
Q 012143 126 AQCLLPESSGDNSLDKELEPEELEEILSKLKESMQSDTRQAVVWNTLGLILLKSGRLQSSISVLSSLLAVDPNNCDCIG- 204 (470)
Q Consensus 126 ~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~- 204 (470)
.++.++ ...|++++|+..|++++..+|+++.++..+|.++...|++++|+..|++++...|.+...+.
T Consensus 103 ~l~~~~-----------~~~g~~~~A~~~~~~al~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~ 171 (368)
T 1fch_A 103 YLGTTQ-----------AENEQELLAISALRRCLELKPDNQTALMALAVSFTNESLQRQACEILRDWLRYTPAYAHLVTP 171 (368)
T ss_dssp HHHHHH-----------HHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTSTTTGGGCC-
T ss_pred HHHHHH-----------HHCcCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcCcHHHHHH
Confidence 222222 23344566666666666666777777778888888888888888888888887777766554
Q ss_pred ---------------HHHHHHHHcCCHHHHHHHHHHHHhhCCC--ChHHHHHHHHHHHhhhcccccccccchhhhhHHHh
Q 012143 205 ---------------NLGIAYFQSGDMEQSAKCFQDLILKDQN--HPAALINYAALLLCKYGSVLAGAGANTGEGACLDQ 267 (470)
Q Consensus 205 ---------------~la~~~~~~g~~~~A~~~~~~~l~~~p~--~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~ 267 (470)
.++.++ ..|++++|+..|++++..+|. ++.++..+|.++. .
T Consensus 172 ~~~~~~~~~~~~~~~~~~~~~-~~~~~~~A~~~~~~a~~~~p~~~~~~~~~~l~~~~~---------------------~ 229 (368)
T 1fch_A 172 AEEGAGGAGLGPSKRILGSLL-SDSLFLEVKELFLAAVRLDPTSIDPDVQCGLGVLFN---------------------L 229 (368)
T ss_dssp --------------CTTHHHH-HHHHHHHHHHHHHHHHHHSTTSCCHHHHHHHHHHHH---------------------H
T ss_pred HHHHhhhhcccHHHHHHHHHh-hcccHHHHHHHHHHHHHhCcCcccHHHHHHHHHHHH---------------------H
Confidence 455555 777888888888888888887 6677777776666 5
Q ss_pred cCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCChhHHHHHHHHHHhcCCCcccHHHHHHHHHHHHhhhccCchHHh
Q 012143 268 ASAVNVAKECLLAALKADPKAAHIWANLANAYYLTGDHRSSGKCLEKAAKLEPNCMSTRYAVAVSRIKDAERSQEPTEQL 347 (470)
Q Consensus 268 ~~~~~~A~~~~~~~~~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~p~~~~~~~~l~~~~~~~~~~~~~~~~~~ 347 (470)
.|++++|+.+|++++..+|+++.++..+|.++...|++++|+..|++++..+|++..
T Consensus 230 ~g~~~~A~~~~~~al~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~----------------------- 286 (368)
T 1fch_A 230 SGEYDKAVDCFTAALSVRPNDYLLWNKLGATLANGNQSEEAVAAYRRALELQPGYIR----------------------- 286 (368)
T ss_dssp TTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHH-----------------------
T ss_pred cCCHHHHHHHHHHHHHhCcCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHH-----------------------
Confidence 778888888888888888888888888888888888888888888888877776432
Q ss_pred hhhHHHHHHHhhcCCCCCCCcHHHHHHHHHHHhccccHHHHHHHHHHHhcchhhhhHhhHHHHHHHhccHHHHHHHHHHH
Q 012143 348 SWAGNEMASILREGDPVQIEPPIAWAGFAAVQKTHHEVAAAFETEENELSKMEECAGAGESAFLDQASAVNVAKECLLAA 427 (470)
Q Consensus 348 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a 427 (470)
+++.+|.++...|++++|+..|+++
T Consensus 287 -------------------------------------------------------~~~~l~~~~~~~g~~~~A~~~~~~a 311 (368)
T 1fch_A 287 -------------------------------------------------------SRYNLGISCINLGAHREAVEHFLEA 311 (368)
T ss_dssp -------------------------------------------------------HHHHHHHHHHHHTCHHHHHHHHHHH
T ss_pred -------------------------------------------------------HHHHHHHHHHHCCCHHHHHHHHHHH
Confidence 2334455777888889999999999
Q ss_pred HhcCCCc-----------HHHHHHHHHHHHHcCChHHHHHHHHHHHHhhcc
Q 012143 428 LKADPKA-----------AHIWANLANAYYLTGDHRSSGKCLEKVLMVYCS 467 (470)
Q Consensus 428 l~~~p~~-----------~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~ 467 (470)
+++.|++ +.+|..+|.++..+|++++|..+++++++.+..
T Consensus 312 l~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~l~~~~~ 362 (368)
T 1fch_A 312 LNMQRKSRGPRGEGGAMSENIWSTLRLALSMLGQSDAYGAADARDLSTLLT 362 (368)
T ss_dssp HHHHHTC------CCCCCHHHHHHHHHHHHHHTCGGGHHHHHTTCHHHHHH
T ss_pred HHhCCCCCCccccccchhhHHHHHHHHHHHHhCChHhHHHhHHHHHHHHHH
Confidence 9988887 899999999999999999999999999988754
|
| >3hym_B Cell division cycle protein 16 homolog; APC, anaphase promoting complex, cell cycle, mitosis, cyclosome, TPR, ubiquitin, ubiquitin ligase, twinning; 2.80A {Homo sapiens} | Back alignment and structure |
|---|
Probab=100.00 E-value=1.1e-31 Score=241.98 Aligned_cols=280 Identities=13% Similarity=0.038 Sum_probs=249.6
Q ss_pred HHHHHhCCCChhHHHHHHHHHHHhCChhHHHHHHHHHHHHHhhhhcccchhhhHHHHHHhhhccccccccCCCccccccC
Q 012143 65 VHVARKMPKNAHAHFLLGLMYQRLGQPLKAVSSYEKAEEILLRCEADIARPELLSLVQIHHAQCLLPESSGDNSLDKELE 144 (470)
Q Consensus 65 ~~~l~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 144 (470)
...+...|+++..+..+|..++..|++++|+..|+++++.
T Consensus 12 ~~~~~~~~~~~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~---------------------------------------- 51 (330)
T 3hym_B 12 PESVDGLQENLDVVVSLAERHYYNCDFKMCYKLTSVVMEK---------------------------------------- 51 (330)
T ss_dssp --------CCCTTHHHHHHHHHHTTCHHHHHHHHHHHHHH----------------------------------------
T ss_pred HHHHhhchhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHc----------------------------------------
Confidence 3455566778888888888888888888888888777654
Q ss_pred cccHHHHHHHHHHhhhcCccchHHHHHHHHHHHHcCChHHHHHHHHHHhhcCCCChHHHHHHHHHHHHcC-CHHHHHHHH
Q 012143 145 PEELEEILSKLKESMQSDTRQAVVWNTLGLILLKSGRLQSSISVLSSLLAVDPNNCDCIGNLGIAYFQSG-DMEQSAKCF 223 (470)
Q Consensus 145 ~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~la~~~~~~g-~~~~A~~~~ 223 (470)
+|.++.++..++.++...|++++|+..++++++.+|+++.++..+|.++...| ++++|+..|
T Consensus 52 -----------------~p~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~A~~~~ 114 (330)
T 3hym_B 52 -----------------DPFHASCLPVHIGTLVELNKANELFYLSHKLVDLYPSNPVSWFAVGCYYLMVGHKNEHARRYL 114 (330)
T ss_dssp -----------------CTTCTTTHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTSTHHHHHHHHHHHHSCSCHHHHHHHH
T ss_pred -----------------CCCChhhHHHHHHHHHHhhhHHHHHHHHHHHHHhCcCCHHHHHHHHHHHHHhhhhHHHHHHHH
Confidence 56667788889999999999999999999999999999999999999999999 999999999
Q ss_pred HHHHhhCCCChHHHHHHHHHHHhhhcccccccccchhhhhHHHhcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcC
Q 012143 224 QDLILKDQNHPAALINYAALLLCKYGSVLAGAGANTGEGACLDQASAVNVAKECLLAALKADPKAAHIWANLANAYYLTG 303 (470)
Q Consensus 224 ~~~l~~~p~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~la~~~~~~g 303 (470)
++++..+|.++.++..+|.++. ..|++++|+..|+++++..|++..++..+|.++...|
T Consensus 115 ~~a~~~~~~~~~~~~~l~~~~~---------------------~~~~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~~ 173 (330)
T 3hym_B 115 SKATTLEKTYGPAWIAYGHSFA---------------------VESEHDQAMAAYFTAAQLMKGCHLPMLYIGLEYGLTN 173 (330)
T ss_dssp HHHHTTCTTCTHHHHHHHHHHH---------------------HHTCHHHHHHHHHHHHHHTTTCSHHHHHHHHHHHHTT
T ss_pred HHHHHhCCccHHHHHHHHHHHH---------------------HccCHHHHHHHHHHHHHhccccHHHHHHHHHHHHHHh
Confidence 9999999999999999988887 7999999999999999999999999999999999999
Q ss_pred ChhHHHHHHHHHHhcCCCcccHHHHHHHHHHHHhhhccCchHHhhhhHHHHHHHhhcCCCCCCCcHHHHHHHHHHHhccc
Q 012143 304 DHRSSGKCLEKAAKLEPNCMSTRYAVAVSRIKDAERSQEPTEQLSWAGNEMASILREGDPVQIEPPIAWAGFAAVQKTHH 383 (470)
Q Consensus 304 ~~~~A~~~~~~a~~~~p~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~ 383 (470)
++++|+..+++++...|++. .++..+|.++...|
T Consensus 174 ~~~~A~~~~~~al~~~~~~~----------------------------------------------~~~~~l~~~~~~~~ 207 (330)
T 3hym_B 174 NSKLAERFFSQALSIAPEDP----------------------------------------------FVMHEVGVVAFQNG 207 (330)
T ss_dssp CHHHHHHHHHHHHTTCTTCH----------------------------------------------HHHHHHHHHHHHTT
T ss_pred hHHHHHHHHHHHHHhCCCCh----------------------------------------------HHHHHHHHHHHHcc
Confidence 99999999999999998853 46778888999999
Q ss_pred cHHHHHHHHHHHhc-----------chhhhhHhhHHHHHHHhccHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHcCChH
Q 012143 384 EVAAAFETEENELS-----------KMEECAGAGESAFLDQASAVNVAKECLLAALKADPKAAHIWANLANAYYLTGDHR 452 (470)
Q Consensus 384 ~~~~A~~~~~~~~~-----------~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~ 452 (470)
++++|+..+.+.+. +....++..+|.++...|++++|+.+|+++++.+|+++.++..+|.++...|+++
T Consensus 208 ~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~la~~~~~~g~~~ 287 (330)
T 3hym_B 208 EWKTAEKWFLDALEKIKAIGNEVTVDKWEPLLNNLGHVCRKLKKYAEALDYHRQALVLIPQNASTYSAIGYIHSLMGNFE 287 (330)
T ss_dssp CHHHHHHHHHHHHHHHTTTSCSCTTTTCCHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCSHHHHHHHHHHHHHTCHH
T ss_pred cHHHHHHHHHHHHHHhhhccccccccHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHhhCccchHHHHHHHHHHHHhccHH
Confidence 99999999999765 3334688999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHhhccC
Q 012143 453 SSGKCLEKVLMVYCSS 468 (470)
Q Consensus 453 ~A~~~~~~al~~~~~~ 468 (470)
+|+.+|++++++.|+.
T Consensus 288 ~A~~~~~~al~~~p~~ 303 (330)
T 3hym_B 288 NAVDYFHTALGLRRDD 303 (330)
T ss_dssp HHHHHHHTTTTTCSCC
T ss_pred HHHHHHHHHHccCCCc
Confidence 9999999999987753
|
| >4g1t_A Interferon-induced protein with tetratricopeptide 2; ISG, all alpha helix, antivirus, antiviral protein; 2.80A {Homo sapiens} | Back alignment and structure |
|---|
Probab=100.00 E-value=7.1e-31 Score=248.83 Aligned_cols=332 Identities=10% Similarity=0.024 Sum_probs=186.3
Q ss_pred chhhhcccchhhhhcChhhHHHHHHHHHHh---------CCCChhHHHHHHHHHHHhCChhHHHHHHHHHHHHHhhhhcc
Q 012143 41 GDQSGLGTSSSSREEKVSSLKTGLVHVARK---------MPKNAHAHFLLGLMYQRLGQPLKAVSSYEKAEEILLRCEAD 111 (470)
Q Consensus 41 ~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~---------~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~ 111 (470)
..+..+|.+ +...|++++|++.|++++++ +|....++..+|.+|..+|++++|+.+|++++++.+.....
T Consensus 52 ~~yn~Lg~~-~~~~G~~~eAl~~~~kAl~~~~~~~~~~~~~~~~~~~~nla~~y~~~g~~~~A~~~~~ka~~i~~~~~~~ 130 (472)
T 4g1t_A 52 TMCNLLAYL-KHLKGQNEAALECLRKAEELIQQEHADQAEIRSLVTWGNYAWVYYHMGRLSDVQIYVDKVKHVCEKFSSP 130 (472)
T ss_dssp HHHHHHHHH-HHHTTCHHHHHHHHHHHHHHHHHHSGGGCTTTTHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCS
T ss_pred HHHHHHHHH-HHHCCCHHHHHHHHHHHHHHHHhcCccccchHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHhHhcccc
Confidence 345567777 77777777777777777664 45566677777777777777777777777777765432110
Q ss_pred cchhhhHHHHHHhhhccccccccCCCccccccCcccHHHHHHHHHHhhhcCccchHHHHHHHHHHHHc--CChHHHHHHH
Q 012143 112 IARPELLSLVQIHHAQCLLPESSGDNSLDKELEPEELEEILSKLKESMQSDTRQAVVWNTLGLILLKS--GRLQSSISVL 189 (470)
Q Consensus 112 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~--~~~~~A~~~~ 189 (470)
..+..+.++..+|.++... +++++|+.+|
T Consensus 131 -------------------------------------------------~~~~~~~~~~~~g~~~~~~~~~~y~~A~~~~ 161 (472)
T 4g1t_A 131 -------------------------------------------------YRIESPELDCEEGWTRLKCGGNQNERAKVCF 161 (472)
T ss_dssp -------------------------------------------------SCCCCHHHHHHHHHHHHHHCTTHHHHHHHHH
T ss_pred -------------------------------------------------cchhhHHHHHHHHHHHHHHccccHHHHHHHH
Confidence 1223345555555554443 3566777777
Q ss_pred HHHhhcCCCChHHHHHHHHHHH---HcCCHHHHHHHHHHHHhhCCCChHHHHHHHHHHHhhhcccccccccchhhhhHHH
Q 012143 190 SSLLAVDPNNCDCIGNLGIAYF---QSGDMEQSAKCFQDLILKDQNHPAALINYAALLLCKYGSVLAGAGANTGEGACLD 266 (470)
Q Consensus 190 ~~a~~~~~~~~~~~~~la~~~~---~~g~~~~A~~~~~~~l~~~p~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~ 266 (470)
+++++++|+++.++..+|.++. ..++.++|++.++++++++|+++.++..++..+.. ++.
T Consensus 162 ~kal~~~p~~~~~~~~~~~~~~~l~~~~~~~~al~~~~~al~l~p~~~~~~~~l~~~~~~-----------------~~~ 224 (472)
T 4g1t_A 162 EKALEKKPKNPEFTSGLAIASYRLDNWPPSQNAIDPLRQAIRLNPDNQYLKVLLALKLHK-----------------MRE 224 (472)
T ss_dssp HHHHHHSTTCHHHHHHHHHHHHHHHHSCCCCCTHHHHHHHHHHCSSCHHHHHHHHHHHHH-----------------CC-
T ss_pred HHHHHhCCCCHHHHHHHHHHHHHhcCchHHHHHHHHHHHHhhcCCcchHHHHHHHHHHHH-----------------HHh
Confidence 7777777777666666666643 34555666777777777777766666666655432 112
Q ss_pred hcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCChhHHHHHHHHHHhcCCCcccHHHHHHHHHHHHhhhccCchHH
Q 012143 267 QASAVNVAKECLLAALKADPKAAHIWANLANAYYLTGDHRSSGKCLEKAAKLEPNCMSTRYAVAVSRIKDAERSQEPTEQ 346 (470)
Q Consensus 267 ~~~~~~~A~~~~~~~~~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~p~~~~~~~~l~~~~~~~~~~~~~~~~~ 346 (470)
..|++++|+.++++++..+|+.+.++..+|.++...|++++|+..|+++++.+|++..++..++............
T Consensus 225 ~~~~~~~a~~~~~~al~~~~~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~y~~~~~~~~~---- 300 (472)
T 4g1t_A 225 EGEEEGEGEKLVEEALEKAPGVTDVLRSAAKFYRRKDEPDKAIELLKKALEYIPNNAYLHCQIGCCYRAKVFQVMN---- 300 (472)
T ss_dssp -----CHHHHHHHHHHHHCSSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHHHHHHH----
T ss_pred hhhHHHHHHHHHHHHHHhCccHHHHHHHHHHHHHHcCchHHHHHHHHHHHHhCCChHHHHHHHHHHHHHHHHHhhh----
Confidence 4556666777777777777777777777777777777777777777777777777666666655433221110000
Q ss_pred hhhhHHHHHHHhhcCCCCCCCcHHHHHHHHHHHhccccHHHHHHHHHHHh--cchhhhhHhhHHHHHHHhccHHHHHHHH
Q 012143 347 LSWAGNEMASILREGDPVQIEPPIAWAGFAAVQKTHHEVAAAFETEENEL--SKMEECAGAGESAFLDQASAVNVAKECL 424 (470)
Q Consensus 347 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~--~~~~~~~~~~l~~~~~~~~~~~~A~~~~ 424 (470)
......+......+.+++|+..+.+.+ +|....++..+|.++...|++++|+.+|
T Consensus 301 -----------------------~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~lg~~~~~~~~~~~A~~~~ 357 (472)
T 4g1t_A 301 -----------------------LRENGMYGKRKLLELIGHAVAHLKKADEANDNLFRVCSILASLHALADQYEEAEYYF 357 (472)
T ss_dssp -----------------------C------CHHHHHHHHHHHHHHHHHHHHHCTTTCCCHHHHHHHHHHTTCHHHHHHHH
T ss_pred -----------------------HHHHHHHHHHHHHhhHHHHHHHHHHHhhcCCchhhhhhhHHHHHHHhccHHHHHHHH
Confidence 001111111222233444555554432 2344444555555555555555555555
Q ss_pred HHHHhcCCCcHH---HHHHHHHHH-HHcCChHHHHHHHHHHHHhhc
Q 012143 425 LAALKADPKAAH---IWANLANAY-YLTGDHRSSGKCLEKVLMVYC 466 (470)
Q Consensus 425 ~~al~~~p~~~~---~~~~la~~~-~~~g~~~~A~~~~~~al~~~~ 466 (470)
+++++++|++.. ++..+|.++ ...|++++|+.+|++++++.|
T Consensus 358 ~kaL~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Ai~~y~kal~i~~ 403 (472)
T 4g1t_A 358 QKEFSKELTPVAKQLLHLRYGNFQLYQMKCEDKAIHHFIEGVKINQ 403 (472)
T ss_dssp HHHHHSCCCHHHHHHHHHHHHHHHHHTSSCHHHHHHHHHHHHHSCC
T ss_pred HHHHhcCCCChHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCc
Confidence 555555554422 234444332 345555555555555555443
|
| >4eqf_A PEX5-related protein; accessory protein, tetratricopeptide repeat, TPR; 3.00A {Mus musculus} | Back alignment and structure |
|---|
Probab=100.00 E-value=6.7e-32 Score=246.95 Aligned_cols=220 Identities=15% Similarity=0.170 Sum_probs=134.4
Q ss_pred HHHHHHHHHHhhhcCccchHHHHHHHHHHHHcCChHHHHHHHHHHhhcCCCChHHHHHH----------HHHHHHcCCHH
Q 012143 148 LEEILSKLKESMQSDTRQAVVWNTLGLILLKSGRLQSSISVLSSLLAVDPNNCDCIGNL----------GIAYFQSGDME 217 (470)
Q Consensus 148 ~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~l----------a~~~~~~g~~~ 217 (470)
+++|+..|++++..+|+++.++..+|.++...|++++|+..|+++++..|++...+..+ |.++...|+++
T Consensus 115 ~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~ 194 (365)
T 4eqf_A 115 EQAAIVALQRCLELQPNNLKALMALAVSYTNTSHQQDACEALKNWIKQNPKYKYLVKNKKGSPGLTRRMSKSPVDSSVLE 194 (365)
T ss_dssp HHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCHHHHCC-------------------CCHHHH
T ss_pred HHHHHHHHHHHHhcCCCCHHHHHHHHHHHHccccHHHHHHHHHHHHHhCccchHHHhhhccchHHHHHHHHHHhhhhhHH
Confidence 34444444444444555666666666666666666666666666666666554444433 66666666666
Q ss_pred HHHHHHHHHHhhCCC--ChHHHHHHHHHHHhhhcccccccccchhhhhHHHhcCCHHHHHHHHHHHHhcCCCCHHHHHHH
Q 012143 218 QSAKCFQDLILKDQN--HPAALINYAALLLCKYGSVLAGAGANTGEGACLDQASAVNVAKECLLAALKADPKAAHIWANL 295 (470)
Q Consensus 218 ~A~~~~~~~l~~~p~--~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~l 295 (470)
+|+..|++++..+|. ++.++..+|.++. ..|++++|+.+|+++++..|+++.++..+
T Consensus 195 ~A~~~~~~al~~~p~~~~~~~~~~l~~~~~---------------------~~g~~~~A~~~~~~al~~~p~~~~~~~~l 253 (365)
T 4eqf_A 195 GVKELYLEAAHQNGDMIDPDLQTGLGVLFH---------------------LSGEFNRAIDAFNAALTVRPEDYSLWNRL 253 (365)
T ss_dssp HHHHHHHHHHHHSCSSCCHHHHHHHHHHHH---------------------HHTCHHHHHHHHHHHHHHCTTCHHHHHHH
T ss_pred HHHHHHHHHHHhCcCccCHHHHHHHHHHHH---------------------HCCCHHHHHHHHHHHHHhCCCCHHHHHHH
Confidence 666666666666666 5666666665555 46666666666666666666666666666
Q ss_pred HHHHHHcCChhHHHHHHHHHHhcCCCcccHHHHHHHHHHHHhhhccCchHHhhhhHHHHHHHhhcCCCCCCCcHHHHHHH
Q 012143 296 ANAYYLTGDHRSSGKCLEKAAKLEPNCMSTRYAVAVSRIKDAERSQEPTEQLSWAGNEMASILREGDPVQIEPPIAWAGF 375 (470)
Q Consensus 296 a~~~~~~g~~~~A~~~~~~a~~~~p~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l 375 (470)
|.++...|++++|+..|+++++.+|++..+
T Consensus 254 ~~~~~~~g~~~~A~~~~~~al~~~p~~~~~-------------------------------------------------- 283 (365)
T 4eqf_A 254 GATLANGDRSEEAVEAYTRALEIQPGFIRS-------------------------------------------------- 283 (365)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHHCTTCHHH--------------------------------------------------
T ss_pred HHHHHHcCCHHHHHHHHHHHHhcCCCchHH--------------------------------------------------
Confidence 666666666666666666666666654322
Q ss_pred HHHHhccccHHHHHHHHHHHhcchhhhhHhhHHHHHHHhccHHHHHHHHHHHHhcCCC------------cHHHHHHHHH
Q 012143 376 AAVQKTHHEVAAAFETEENELSKMEECAGAGESAFLDQASAVNVAKECLLAALKADPK------------AAHIWANLAN 443 (470)
Q Consensus 376 ~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~p~------------~~~~~~~la~ 443 (470)
++.+|.++...|++++|+.+|++++++.|+ +..+|..++.
T Consensus 284 ----------------------------~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~l~~ 335 (365)
T 4eqf_A 284 ----------------------------RYNLGISCINLGAYREAVSNFLTALSLQRKSRNQQQVPHPAISGNIWAALRI 335 (365)
T ss_dssp ----------------------------HHHHHHHHHHHTCCHHHHHHHHHHHHHHHCC------------CHHHHHHHH
T ss_pred ----------------------------HHHHHHHHHHCCCHHHHHHHHHHHHHhCcccCCCcccchhhhHHHHHHHHHH
Confidence 222333455555666666666666666554 3567788888
Q ss_pred HHHHcCChHHHHHHHHHHHHhhc
Q 012143 444 AYYLTGDHRSSGKCLEKVLMVYC 466 (470)
Q Consensus 444 ~~~~~g~~~~A~~~~~~al~~~~ 466 (470)
++..+|+.+.|....++.++.+.
T Consensus 336 ~~~~~g~~~~a~~~~~~~l~~~~ 358 (365)
T 4eqf_A 336 ALSLMDQPELFQAANLGDLDVLL 358 (365)
T ss_dssp HHHHHTCHHHHHHHHTTCCGGGT
T ss_pred HHHHcCcHHHHHHHHHhhHHHHH
Confidence 88888888888877777666553
|
| >2h6f_A Protein farnesyltransferase/geranylgeranyltransferase type I alpha subunit; ftase, farnesyltransferase, farnesyl transferase, prenyltransferase, CAAX, RAS, lipid modification, prenylation; HET: SUC FAR; 1.50A {Homo sapiens} SCOP: a.118.6.1 PDB: 1jcq_A* 1ld7_A* 1mzc_A* 1s63_A* 1sa4_A* 1tn6_A* 1ld8_A* 2h6g_A* 2h6h_A* 2h6i_A* 2iej_A* 3e37_A* 2f0y_A* 3ksl_A* 2zir_A* 2zis_A* 1o5m_A* 3ksq_A* 1o1t_A* 1o1s_A* ... | Back alignment and structure |
|---|
Probab=99.98 E-value=4.7e-31 Score=238.86 Aligned_cols=268 Identities=12% Similarity=0.080 Sum_probs=184.4
Q ss_pred HHHhCCCChhHHHHHHHHHHHhCChhHHHHHHHHHHHHHhhhhcccchhhhHHHHHHhhhccccccccCCCccccccCcc
Q 012143 67 VARKMPKNAHAHFLLGLMYQRLGQPLKAVSSYEKAEEILLRCEADIARPELLSLVQIHHAQCLLPESSGDNSLDKELEPE 146 (470)
Q Consensus 67 ~l~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 146 (470)
++..+|+++.++..+|.++...|++++|+..|++++.++|+. ..+|..++.++. ..|
T Consensus 89 ai~~~p~~~~a~~~lg~~~~~~g~~~~Al~~~~~al~l~P~~------------~~a~~~~g~~l~-----------~~g 145 (382)
T 2h6f_A 89 QIIYSDKFRDVYDYFRAVLQRDERSERAFKLTRDAIELNAAN------------YTVWHFRRVLLK-----------SLQ 145 (382)
T ss_dssp EECCCHHHHHHHHHHHHHHHHTCCCHHHHHHHHHHHHHCTTC------------HHHHHHHHHHHH-----------HTT
T ss_pred hhhCChhhHHHHHHHHHHHHHCCChHHHHHHHHHHHHhCccC------------HHHHHHHHHHHH-----------Hcc
Confidence 345677777777777777777777888888877777775543 122333333332 223
Q ss_pred c-HHHHHHHHHHhhhcCccchHHHHHHHHHHHHcCChHHHHHHHHHHhhcCCCChHHHHHHHHHHHHcCCHHHHHHHHHH
Q 012143 147 E-LEEILSKLKESMQSDTRQAVVWNTLGLILLKSGRLQSSISVLSSLLAVDPNNCDCIGNLGIAYFQSGDMEQSAKCFQD 225 (470)
Q Consensus 147 ~-~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~ 225 (470)
+ +++|+..|++++..+|+++.+|+.+|.++..+|++++|+.+|+++++++|++..+|+.+|.++..+|++++|+..|++
T Consensus 146 ~d~~eAl~~~~~al~l~P~~~~a~~~~g~~~~~~g~~~eAl~~~~kal~ldP~~~~a~~~lg~~~~~~g~~~eAl~~~~~ 225 (382)
T 2h6f_A 146 KDLHEEMNYITAIIEEQPKNYQVWHHRRVLVEWLRDPSQELEFIADILNQDAKNYHAWQHRQWVIQEFKLWDNELQYVDQ 225 (382)
T ss_dssp CCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCCTTHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCCTTHHHHHHH
T ss_pred cCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCccCHHHHHHHHHHHHHcCChHHHHHHHHH
Confidence 2 466666666666667777778888888888888888888888888888888888888888888888888888888888
Q ss_pred HHhhCCCChHHHHHHHHHHHhhhcccccccccchhhhhHHHhcCCHHHH-----HHHHHHHHhcCCCCHHHHHHHHHHHH
Q 012143 226 LILKDQNHPAALINYAALLLCKYGSVLAGAGANTGEGACLDQASAVNVA-----KECLLAALKADPKAAHIWANLANAYY 300 (470)
Q Consensus 226 ~l~~~p~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A-----~~~~~~~~~~~p~~~~~~~~la~~~~ 300 (470)
+++++|++..+|..+|.++.. ..|.+++| +.+|++++.++|++..+|..+|.++.
T Consensus 226 al~l~P~~~~a~~~lg~~l~~--------------------l~~~~~eA~~~~el~~~~~Al~l~P~~~~a~~~l~~ll~ 285 (382)
T 2h6f_A 226 LLKEDVRNNSVWNQRYFVISN--------------------TTGYNDRAVLEREVQYTLEMIKLVPHNESAWNYLKGILQ 285 (382)
T ss_dssp HHHHCTTCHHHHHHHHHHHHH--------------------TTCSCSHHHHHHHHHHHHHHHHHSTTCHHHHHHHHHHHT
T ss_pred HHHhCCCCHHHHHHHHHHHHH--------------------hcCcchHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHH
Confidence 888888888888777777762 14444555 47778888888888888888887777
Q ss_pred HcC--ChhHHHHHHHHHHhcCCCcccHHHHHHHHHHHHhhhccCchHHhhhhHHHHHHHhhcCCCCCCCcHHHHHHHHHH
Q 012143 301 LTG--DHRSSGKCLEKAAKLEPNCMSTRYAVAVSRIKDAERSQEPTEQLSWAGNEMASILREGDPVQIEPPIAWAGFAAV 378 (470)
Q Consensus 301 ~~g--~~~~A~~~~~~a~~~~p~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~ 378 (470)
..| ++++|+..+.++ +.+|++.. ++..+|.+
T Consensus 286 ~~g~~~~~~a~~~~~~~-~~~p~~~~----------------------------------------------al~~La~~ 318 (382)
T 2h6f_A 286 DRGLSKYPNLLNQLLDL-QPSHSSPY----------------------------------------------LIAFLVDI 318 (382)
T ss_dssp TTCGGGCHHHHHHHHHH-TTTCCCHH----------------------------------------------HHHHHHHH
T ss_pred ccCccchHHHHHHHHHh-ccCCCCHH----------------------------------------------HHHHHHHH
Confidence 777 577777777766 65665433 23333333
Q ss_pred HhccccHHHHHHHHHHHhcchhhhhHhhHHHHHHHhcc-HHHHHHHHHHH-HhcCCCcHHHHHHHHHHHHHc
Q 012143 379 QKTHHEVAAAFETEENELSKMEECAGAGESAFLDQASA-VNVAKECLLAA-LKADPKAAHIWANLANAYYLT 448 (470)
Q Consensus 379 ~~~~~~~~~A~~~~~~~~~~~~~~~~~~l~~~~~~~~~-~~~A~~~~~~a-l~~~p~~~~~~~~la~~~~~~ 448 (470)
+...|+... ...++ +++|+.+|+++ ++++|.....|..++..+..+
T Consensus 319 ~~~~~~~~~------------------------~~~~~~~~~A~~~~~~l~~~~DP~r~~~w~~~~~~l~~~ 366 (382)
T 2h6f_A 319 YEDMLENQC------------------------DNKEDILNKALELCEILAKEKDTIRKEYWRYIGRSLQSK 366 (382)
T ss_dssp HHHHHHTTC------------------------SSHHHHHHHHHHHHHHHHHTTCGGGHHHHHHHHHHHHHH
T ss_pred HHHHhcccc------------------------cchHHHHHHHHHHHHHHHHHhCchhHHHHHHHHHHHHHH
Confidence 332210000 00022 58999999999 999999999999999988654
|
| >3cv0_A Peroxisome targeting signal 1 receptor PEX5; TPR motifs, TPR protein, peroxin 5, PEX5, PTS1 binding domain, protein-peptide complex, receptor; 2.00A {Trypanosoma brucei} PDB: 3cvl_A 3cvn_A 3cvp_A 3cvq_A | Back alignment and structure |
|---|
Probab=99.98 E-value=9.2e-31 Score=235.52 Aligned_cols=272 Identities=12% Similarity=0.127 Sum_probs=214.7
Q ss_pred CcchhhhcccchhhhhcChhhHHHHHHHHHHhCCCChhHHHHHHHHHHHhCChhHHHHHHHHHHHHHhhhhcccchhhhH
Q 012143 39 ADGDQSGLGTSSSSREEKVSSLKTGLVHVARKMPKNAHAHFLLGLMYQRLGQPLKAVSSYEKAEEILLRCEADIARPELL 118 (470)
Q Consensus 39 ~~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~ 118 (470)
+...++.+|.. +...|++++|...|+++++.+|+++.++..+|.++...|++++|+..|+++++.
T Consensus 20 ~~~~~~~~a~~-~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~-------------- 84 (327)
T 3cv0_A 20 YHENPMEEGLS-MLKLANLAEAALAFEAVCQAAPEREEAWRSLGLTQAENEKDGLAIIALNHARML-------------- 84 (327)
T ss_dssp GSSCHHHHHHH-HHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--------------
T ss_pred hhHHHHHHHHH-HHHhccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhc--------------
Confidence 34456677777 777777777777777777777777777777777777777777777777666654
Q ss_pred HHHHHhhhccccccccCCCccccccCcccHHHHHHHHHHhhhcCccchHHHHHHHHHHHHcCChHHHHHHHHHHhhcCCC
Q 012143 119 SLVQIHHAQCLLPESSGDNSLDKELEPEELEEILSKLKESMQSDTRQAVVWNTLGLILLKSGRLQSSISVLSSLLAVDPN 198 (470)
Q Consensus 119 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~ 198 (470)
+|.++.++..+|.++...|++++|+..+++++..+|.
T Consensus 85 -------------------------------------------~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~ 121 (327)
T 3cv0_A 85 -------------------------------------------DPKDIAVHAALAVSHTNEHNANAALASLRAWLLSQPQ 121 (327)
T ss_dssp -------------------------------------------CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTSTT
T ss_pred -------------------------------------------CcCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCc
Confidence 4566777888888888888888888888888888888
Q ss_pred ChHHHHHH--------------HH-HHHHcCCHHHHHHHHHHHHhhCCCChHHHHHHHHHHHhhhcccccccccchhhhh
Q 012143 199 NCDCIGNL--------------GI-AYFQSGDMEQSAKCFQDLILKDQNHPAALINYAALLLCKYGSVLAGAGANTGEGA 263 (470)
Q Consensus 199 ~~~~~~~l--------------a~-~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~ 263 (470)
+...+..+ +. ++...|++++|+..+++++...|.++.++..+|.++.
T Consensus 122 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~------------------ 183 (327)
T 3cv0_A 122 YEQLGSVNLQADVDIDDLNVQSEDFFFAAPNEYRECRTLLHAALEMNPNDAQLHASLGVLYN------------------ 183 (327)
T ss_dssp TTTC--------------------CCTTSHHHHHHHHHHHHHHHHHSTTCHHHHHHHHHHHH------------------
T ss_pred cHHHHHHHhHHHHHHHHHHHHHHhHHHHHcccHHHHHHHHHHHHhhCCCCHHHHHHHHHHHH------------------
Confidence 87777666 66 6778888888888888888888888888888877776
Q ss_pred HHHhcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCChhHHHHHHHHHHhcCCCcccHHHHHHHHHHHHhhhccCc
Q 012143 264 CLDQASAVNVAKECLLAALKADPKAAHIWANLANAYYLTGDHRSSGKCLEKAAKLEPNCMSTRYAVAVSRIKDAERSQEP 343 (470)
Q Consensus 264 ~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~p~~~~~~~~l~~~~~~~~~~~~~~ 343 (470)
..|++++|+.+++++++..|+++.++..+|.++...|++++|+..|+++++..|++..+
T Consensus 184 ---~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~------------------ 242 (327)
T 3cv0_A 184 ---LSNNYDSAAANLRRAVELRPDDAQLWNKLGATLANGNRPQEALDAYNRALDINPGYVRV------------------ 242 (327)
T ss_dssp ---HTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHH------------------
T ss_pred ---HhccHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHH------------------
Confidence 68888888888888888888888888888888888888888888888888888775432
Q ss_pred hHHhhhhHHHHHHHhhcCCCCCCCcHHHHHHHHHHHhccccHHHHHHHHHHHhcchhhhhHhhHHHHHHHhccHHHHHHH
Q 012143 344 TEQLSWAGNEMASILREGDPVQIEPPIAWAGFAAVQKTHHEVAAAFETEENELSKMEECAGAGESAFLDQASAVNVAKEC 423 (470)
Q Consensus 344 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~ 423 (470)
++.+|.++...|++++|+..
T Consensus 243 ------------------------------------------------------------~~~l~~~~~~~g~~~~A~~~ 262 (327)
T 3cv0_A 243 ------------------------------------------------------------MYNMAVSYSNMSQYDLAAKQ 262 (327)
T ss_dssp ------------------------------------------------------------HHHHHHHHHHTTCHHHHHHH
T ss_pred ------------------------------------------------------------HHHHHHHHHHhccHHHHHHH
Confidence 22344467778888889999
Q ss_pred HHHHHhcCCC------------cHHHHHHHHHHHHHcCChHHHHHHHHHHHHhhcc
Q 012143 424 LLAALKADPK------------AAHIWANLANAYYLTGDHRSSGKCLEKVLMVYCS 467 (470)
Q Consensus 424 ~~~al~~~p~------------~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~ 467 (470)
|+++++..|+ ++.++..+|.++...|++++|...++++++.++.
T Consensus 263 ~~~a~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~l~~~~~ 318 (327)
T 3cv0_A 263 LVRAIYMQVGGTTPTGEASREATRSMWDFFRMLLNVMNRPDLVELTYAQNVEPFAK 318 (327)
T ss_dssp HHHHHHHHTTSCC-----CCTHHHHHHHHHHHHHHHTTCHHHHHHHTTCCSHHHHH
T ss_pred HHHHHHhCCccccccccchhhcCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhcch
Confidence 9999998888 7899999999999999999999999999888764
|
| >4eqf_A PEX5-related protein; accessory protein, tetratricopeptide repeat, TPR; 3.00A {Mus musculus} | Back alignment and structure |
|---|
Probab=99.97 E-value=2.8e-30 Score=236.17 Aligned_cols=273 Identities=17% Similarity=0.168 Sum_probs=238.2
Q ss_pred hhhhhhhhhhhhhhHHHHHHHHHHHHhcCCCCcchhhhcccchhhhhcChhhHHHHHHHHHHhCCCChhHHHHHHHHHHH
Q 012143 8 AEVEGKKINKLGKCRSRISSKMDSALEFGVDADGDQSGLGTSSSSREEKVSSLKTGLVHVARKMPKNAHAHFLLGLMYQR 87 (470)
Q Consensus 8 ~~~~~~~~~~~g~~~~a~~~~~~~~l~~~p~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~l~~~~~~ 87 (470)
.-..|..+...|++++|+ ..++++++.+|++...|+.+|.+ +...|++++|+..|+++++.+|+++.++..+|.++..
T Consensus 68 ~~~~~~~~~~~g~~~~A~-~~~~~al~~~p~~~~~~~~lg~~-~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~ 145 (365)
T 4eqf_A 68 AFEEGLKRLKEGDLPVTI-LFMEAAILQDPGDAEAWQFLGIT-QAENENEQAAIVALQRCLELQPNNLKALMALAVSYTN 145 (365)
T ss_dssp HHHHHHHHHHHTCHHHHH-HHHHHHHHHCTTCHHHHHHHHHH-HHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHCCCHHHHH-HHHHHHHHhCcCCHHHHHHHHHH-HHHCCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHc
Confidence 344688899999999999 99999999999999999999999 9999999999999999999999999999999999999
Q ss_pred hCChhHHHHHHHHHHHHHhhhhcccchhhhHHHHHHhhhccccccccCCCccccccCcccHHHHHHHHHHhhhcCcc--c
Q 012143 88 LGQPLKAVSSYEKAEEILLRCEADIARPELLSLVQIHHAQCLLPESSGDNSLDKELEPEELEEILSKLKESMQSDTR--Q 165 (470)
Q Consensus 88 ~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~p~--~ 165 (470)
.|++++|+..|+++++..|........ ....+.++..++.. +...|++++|+..+++++..+|. +
T Consensus 146 ~g~~~~A~~~~~~al~~~p~~~~~~~~---------~~~~~~~~~~l~~~----~~~~g~~~~A~~~~~~al~~~p~~~~ 212 (365)
T 4eqf_A 146 TSHQQDACEALKNWIKQNPKYKYLVKN---------KKGSPGLTRRMSKS----PVDSSVLEGVKELYLEAAHQNGDMID 212 (365)
T ss_dssp TTCHHHHHHHHHHHHHHCHHHHCC--------------------------------CCHHHHHHHHHHHHHHHHSCSSCC
T ss_pred cccHHHHHHHHHHHHHhCccchHHHhh---------hccchHHHHHHHHH----HhhhhhHHHHHHHHHHHHHhCcCccC
Confidence 999999999999999997764321100 00112233333444 67889999999999999999999 8
Q ss_pred hHHHHHHHHHHHHcCChHHHHHHHHHHhhcCCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCChHHHHHHHHHHH
Q 012143 166 AVVWNTLGLILLKSGRLQSSISVLSSLLAVDPNNCDCIGNLGIAYFQSGDMEQSAKCFQDLILKDQNHPAALINYAALLL 245 (470)
Q Consensus 166 ~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~l~~~~~ 245 (470)
+.++..+|.++...|++++|+.+|+++++.+|+++.++..+|.++...|++++|+..|+++++.+|+++.++..+|.++.
T Consensus 213 ~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~ 292 (365)
T 4eqf_A 213 PDLQTGLGVLFHLSGEFNRAIDAFNAALTVRPEDYSLWNRLGATLANGDRSEEAVEAYTRALEIQPGFIRSRYNLGISCI 292 (365)
T ss_dssp HHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCchHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999998887
Q ss_pred hhhcccccccccchhhhhHHHhcCCHHHHHHHHHHHHhcCCC------------CHHHHHHHHHHHHHcCChhHHHHHHH
Q 012143 246 CKYGSVLAGAGANTGEGACLDQASAVNVAKECLLAALKADPK------------AAHIWANLANAYYLTGDHRSSGKCLE 313 (470)
Q Consensus 246 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~p~------------~~~~~~~la~~~~~~g~~~~A~~~~~ 313 (470)
..|++++|+.+|++++++.|+ +..+|..++.++...|+.+.+..+..
T Consensus 293 ---------------------~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~ 351 (365)
T 4eqf_A 293 ---------------------NLGAYREAVSNFLTALSLQRKSRNQQQVPHPAISGNIWAALRIALSLMDQPELFQAANL 351 (365)
T ss_dssp ---------------------HHTCCHHHHHHHHHHHHHHHCC------------CHHHHHHHHHHHHHTCHHHHHHHHT
T ss_pred ---------------------HCCCHHHHHHHHHHHHHhCcccCCCcccchhhhHHHHHHHHHHHHHHcCcHHHHHHHHH
Confidence 799999999999999999877 36889999999999999998887776
Q ss_pred HHH
Q 012143 314 KAA 316 (470)
Q Consensus 314 ~a~ 316 (470)
+.+
T Consensus 352 ~~l 354 (365)
T 4eqf_A 352 GDL 354 (365)
T ss_dssp TCC
T ss_pred hhH
Confidence 643
|
| >1fch_A Peroxisomal targeting signal 1 receptor; protein-peptide complex, tetratricopeptide repeat, TPR, helical repeat, signaling protein; 2.20A {Homo sapiens} SCOP: a.118.8.1 PDB: 2j9q_A 3imz_B* 3r9a_B* 2c0m_A 2c0l_A | Back alignment and structure |
|---|
Probab=99.97 E-value=8.9e-30 Score=233.13 Aligned_cols=279 Identities=16% Similarity=0.142 Sum_probs=242.7
Q ss_pred hhhhhhhhhhhhhHHHHHHHHHHHHhcCCCCcchhhhcccchhhhhcChhhHHHHHHHHHHhCCCChhHHHHHHHHHHHh
Q 012143 9 EVEGKKINKLGKCRSRISSKMDSALEFGVDADGDQSGLGTSSSSREEKVSSLKTGLVHVARKMPKNAHAHFLLGLMYQRL 88 (470)
Q Consensus 9 ~~~~~~~~~~g~~~~a~~~~~~~~l~~~p~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~l~~~~~~~ 88 (470)
...|..+...|++.+|+ ..+.++++.+|++...+..+|.+ +...|++++|...|+++++.+|+++.++..+|.++...
T Consensus 68 ~~~~~~~~~~g~~~~A~-~~~~~al~~~p~~~~~~~~l~~~-~~~~g~~~~A~~~~~~al~~~~~~~~~~~~l~~~~~~~ 145 (368)
T 1fch_A 68 FEEGLRRLQEGDLPNAV-LLFEAAVQQDPKHMEAWQYLGTT-QAENEQELLAISALRRCLELKPDNQTALMALAVSFTNE 145 (368)
T ss_dssp HHHHHHHHHTTCHHHHH-HHHHHHHHSCTTCHHHHHHHHHH-HHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHCCCHHHHH-HHHHHHHHhCCCCHHHHHHHHHH-HHHCcCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHc
Confidence 35688899999999999 99999999999999999999999 99999999999999999999999999999999999999
Q ss_pred CChhHHHHHHHHHHHHHhhhhcccchhhhHHHHHHhhhccccccccCCCccccccCcccHHHHHHHHHHhhhcCcc--ch
Q 012143 89 GQPLKAVSSYEKAEEILLRCEADIARPELLSLVQIHHAQCLLPESSGDNSLDKELEPEELEEILSKLKESMQSDTR--QA 166 (470)
Q Consensus 89 g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~p~--~~ 166 (470)
|++++|+..|++++...|............ ............++. .+..|++++|+..+++++..+|. ++
T Consensus 146 g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~-----~~~~~~~~~A~~~~~~a~~~~p~~~~~ 217 (368)
T 1fch_A 146 SLQRQACEILRDWLRYTPAYAHLVTPAEEG---AGGAGLGPSKRILGS-----LLSDSLFLEVKELFLAAVRLDPTSIDP 217 (368)
T ss_dssp TCHHHHHHHHHHHHHTSTTTGGGCC------------------CTTHH-----HHHHHHHHHHHHHHHHHHHHSTTSCCH
T ss_pred CCHHHHHHHHHHHHHhCcCcHHHHHHHHHH---hhhhcccHHHHHHHH-----HhhcccHHHHHHHHHHHHHhCcCcccH
Confidence 999999999999999877654322100000 000000000111111 23778999999999999999999 89
Q ss_pred HHHHHHHHHHHHcCChHHHHHHHHHHhhcCCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCChHHHHHHHHHHHh
Q 012143 167 VVWNTLGLILLKSGRLQSSISVLSSLLAVDPNNCDCIGNLGIAYFQSGDMEQSAKCFQDLILKDQNHPAALINYAALLLC 246 (470)
Q Consensus 167 ~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~l~~~~~~ 246 (470)
.++..+|.++...|++++|+..|++++..+|+++.++..+|.++...|++++|+..|++++..+|+++.++..+|.++.
T Consensus 218 ~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~l~~~~~- 296 (368)
T 1fch_A 218 DVQCGLGVLFNLSGEYDKAVDCFTAALSVRPNDYLLWNKLGATLANGNQSEEAVAAYRRALELQPGYIRSRYNLGISCI- 296 (368)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHH-
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHH-
Confidence 9999999999999999999999999999999999999999999999999999999999999999999999999988887
Q ss_pred hhcccccccccchhhhhHHHhcCCHHHHHHHHHHHHhcCCCC-----------HHHHHHHHHHHHHcCChhHHHHHHHHH
Q 012143 247 KYGSVLAGAGANTGEGACLDQASAVNVAKECLLAALKADPKA-----------AHIWANLANAYYLTGDHRSSGKCLEKA 315 (470)
Q Consensus 247 ~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~p~~-----------~~~~~~la~~~~~~g~~~~A~~~~~~a 315 (470)
..|++++|+.+|++++.+.|++ ..+|..+|.++...|++++|..++.++
T Consensus 297 --------------------~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~ 356 (368)
T 1fch_A 297 --------------------NLGAHREAVEHFLEALNMQRKSRGPRGEGGAMSENIWSTLRLALSMLGQSDAYGAADARD 356 (368)
T ss_dssp --------------------HHTCHHHHHHHHHHHHHHHHTC------CCCCCHHHHHHHHHHHHHHTCGGGHHHHHTTC
T ss_pred --------------------HCCCHHHHHHHHHHHHHhCCCCCCccccccchhhHHHHHHHHHHHHhCChHhHHHhHHHH
Confidence 7999999999999999999987 899999999999999999999999877
Q ss_pred Hhc
Q 012143 316 AKL 318 (470)
Q Consensus 316 ~~~ 318 (470)
+..
T Consensus 357 l~~ 359 (368)
T 1fch_A 357 LST 359 (368)
T ss_dssp HHH
T ss_pred HHH
Confidence 654
|
| >2xm6_A Protein corresponding to locus C5321 from CFT073 strain; unknown function, SEL1-like repeats; 1.68A {Escherichia coli} | Back alignment and structure |
|---|
Probab=99.97 E-value=9.7e-28 Score=227.83 Aligned_cols=374 Identities=15% Similarity=0.077 Sum_probs=283.5
Q ss_pred HHHHHHHhcCCCCcchhhhcccchhhh----hcChhhHHHHHHHHHHhCCCChhHHHHHHHHHHH----hCChhHHHHHH
Q 012143 27 SKMDSALEFGVDADGDQSGLGTSSSSR----EEKVSSLKTGLVHVARKMPKNAHAHFLLGLMYQR----LGQPLKAVSSY 98 (470)
Q Consensus 27 ~~~~~~l~~~p~~~~~~~~~~~~~~~~----~~~~~~A~~~~~~~l~~~p~~~~~~~~l~~~~~~----~g~~~~A~~~~ 98 (470)
..+.++.+ +.++.+++.+|.. +.. .+++++|...|+++.+. .++.+++.+|.+|.. .+++++|+.+|
T Consensus 28 ~~~~~~a~--~g~~~a~~~lg~~-y~~g~~~~~~~~~A~~~~~~a~~~--~~~~a~~~Lg~~y~~g~g~~~~~~~A~~~~ 102 (490)
T 2xm6_A 28 EQLKQKAE--SGEAKAQLELGYR-YFQGNETTKDLTQAMDWFRRAAEQ--GYTPAEYVLGLRYMNGEGVPQDYAQAVIWY 102 (490)
T ss_dssp HHHHHHHH--TTCHHHHHHHHHH-HHHTSSSCCCHHHHHHHHHHHHHT--TCHHHHHHHHHHHHHTSSSCCCHHHHHHHH
T ss_pred HHHHHHHH--CCCHHHHHHHHHH-HHcCCCCCcCHHHHHHHHHHHHHC--CCHHHHHHHHHHHHcCCCCCCCHHHHHHHH
Confidence 44444433 5677888888888 777 78888999999888765 678888889999888 88889999999
Q ss_pred HHHHHHHhhhhcccchhhhHHHHHHhhhccccccc-cCCCccccccCcccHHHHHHHHHHhhhcCccchHHHHHHHHHHH
Q 012143 99 EKAEEILLRCEADIARPELLSLVQIHHAQCLLPES-SGDNSLDKELEPEELEEILSKLKESMQSDTRQAVVWNTLGLILL 177 (470)
Q Consensus 99 ~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~ 177 (470)
+++.+... + .++..++.++.. .|.. +++++|+..|+++... +++.+++.+|.+|.
T Consensus 103 ~~a~~~~~--------~------~a~~~Lg~~y~~g~g~~--------~~~~~A~~~~~~a~~~--~~~~a~~~Lg~~y~ 158 (490)
T 2xm6_A 103 KKAALKGL--------P------QAQQNLGVMYHEGNGVK--------VDKAESVKWFRLAAEQ--GRDSGQQSMGDAYF 158 (490)
T ss_dssp HHHHHTTC--------H------HHHHHHHHHHHHTSSSC--------CCHHHHHHHHHHHHHT--TCHHHHHHHHHHHH
T ss_pred HHHHHCCC--------H------HHHHHHHHHHHcCCCCC--------CCHHHHHHHHHHHHHC--CCHHHHHHHHHHHH
Confidence 98877421 1 122333333332 2221 4568899999888764 56788888998888
Q ss_pred H----cCChHHHHHHHHHHhhcCCCChHHHHHHHHHHHH----cCCHHHHHHHHHHHHhhCCCChHHHHHHHHHHHhhhc
Q 012143 178 K----SGRLQSSISVLSSLLAVDPNNCDCIGNLGIAYFQ----SGDMEQSAKCFQDLILKDQNHPAALINYAALLLCKYG 249 (470)
Q Consensus 178 ~----~~~~~~A~~~~~~a~~~~~~~~~~~~~la~~~~~----~g~~~~A~~~~~~~l~~~p~~~~~~~~l~~~~~~~~~ 249 (470)
. .+++++|+.+|+++++. .++.+++.+|.+|.. .+++++|+.+|+++.+. .++.++..++.++....+
T Consensus 159 ~g~g~~~d~~~A~~~~~~a~~~--~~~~a~~~Lg~~y~~g~g~~~~~~~A~~~~~~a~~~--~~~~a~~~lg~~y~~g~g 234 (490)
T 2xm6_A 159 EGDGVTRDYVMAREWYSKAAEQ--GNVWSCNQLGYMYSRGLGVERNDAISAQWYRKSATS--GDELGQLHLADMYYFGIG 234 (490)
T ss_dssp HTSSSCCCHHHHHHHHHHHHHT--TCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHT--TCHHHHHHHHHHHHHTSS
T ss_pred cCCCCCCCHHHHHHHHHHHHHC--CCHHHHHHHHHHHhcCCCCCcCHHHHHHHHHHHHHC--CCHHHHHHHHHHHHcCCC
Confidence 8 78899999999988875 568888889988888 88899999999888764 567788888888873100
Q ss_pred ccccccccchhhhhHHHhcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHH----cCChhHHHHHHHHHHhcCCCcccH
Q 012143 250 SVLAGAGANTGEGACLDQASAVNVAKECLLAALKADPKAAHIWANLANAYYL----TGDHRSSGKCLEKAAKLEPNCMST 325 (470)
Q Consensus 250 ~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~la~~~~~----~g~~~~A~~~~~~a~~~~p~~~~~ 325 (470)
..+++++|+.+|+++++. .++.++..+|.++.. .+++++|+.+|+++.+. .++.+
T Consensus 235 -----------------~~~~~~~A~~~~~~a~~~--~~~~a~~~lg~~y~~g~~~~~d~~~A~~~~~~a~~~--~~~~a 293 (490)
T 2xm6_A 235 -----------------VTQDYTQSRVLFSQSAEQ--GNSIAQFRLGYILEQGLAGAKEPLKALEWYRKSAEQ--GNSDG 293 (490)
T ss_dssp -----------------SCCCHHHHHHHHHHHHTT--TCHHHHHHHHHHHHHTTTSSCCHHHHHHHHHHHHTT--TCHHH
T ss_pred -----------------CCCCHHHHHHHHHHHHHC--CCHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHc--CCHHH
Confidence 267888888888888865 457888888888888 88888888888888765 45556
Q ss_pred HHHHHHHHHHHhhhccCchHHhhhhHHHHHHHhhcCCCCCCCcHHHHHHHHHHHhccc---cHHHHHHHHHHHhcchhhh
Q 012143 326 RYAVAVSRIKDAERSQEPTEQLSWAGNEMASILREGDPVQIEPPIAWAGFAAVQKTHH---EVAAAFETEENELSKMEEC 402 (470)
Q Consensus 326 ~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~---~~~~A~~~~~~~~~~~~~~ 402 (470)
.+.++........... .....+...+...... ..+.++..+|.++...| ++++|+..++++.....+.
T Consensus 294 ~~~Lg~~y~~~~~g~~---~~~~~A~~~~~~a~~~------~~~~a~~~lg~~y~~~g~~~~~~~A~~~~~~a~~~~~~~ 364 (490)
T 2xm6_A 294 QYYLAHLYDKGAEGVA---KNREQAISWYTKSAEQ------GDATAQANLGAIYFRLGSEEEHKKAVEWFRKAAAKGEKA 364 (490)
T ss_dssp HHHHHHHHHHCBTTBC---CCHHHHHHHHHHHHHT------TCHHHHHHHHHHHHHSCCHHHHHHHHHHHHHHHHTTCHH
T ss_pred HHHHHHHHHcCCCCCc---CCHHHHHHHHHHHHhc------CCHHHHHHHHHHHHhCCCcccHHHHHHHHHHHHHCCCHH
Confidence 6666654433211111 1222333333333332 34578899999998755 8999999999988888889
Q ss_pred hHhhHHHHHHH----hccHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHH----cCChHHHHHHHHHHHHhh
Q 012143 403 AGAGESAFLDQ----ASAVNVAKECLLAALKADPKAAHIWANLANAYYL----TGDHRSSGKCLEKVLMVY 465 (470)
Q Consensus 403 ~~~~l~~~~~~----~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~----~g~~~~A~~~~~~al~~~ 465 (470)
+++.+|.+|.. .+++++|+.+|+++++. .++.+++++|.+|.. .+++++|+.+|+++++..
T Consensus 365 a~~~Lg~~y~~g~g~~~~~~~A~~~~~~A~~~--~~~~a~~~Lg~~y~~g~g~~~d~~~A~~~~~~A~~~~ 433 (490)
T 2xm6_A 365 AQFNLGNALLQGKGVKKDEQQAAIWMRKAAEQ--GLSAAQVQLGEIYYYGLGVERDYVQAWAWFDTASTND 433 (490)
T ss_dssp HHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHT--TCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHcCCCCCCCHHHHHHHHHHHHhC--CCHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHCC
Confidence 99999999999 89999999999999986 468999999999998 899999999999999987
|
| >3cv0_A Peroxisome targeting signal 1 receptor PEX5; TPR motifs, TPR protein, peroxin 5, PEX5, PTS1 binding domain, protein-peptide complex, receptor; 2.00A {Trypanosoma brucei} PDB: 3cvl_A 3cvn_A 3cvp_A 3cvq_A | Back alignment and structure |
|---|
Probab=99.97 E-value=1.4e-29 Score=227.69 Aligned_cols=281 Identities=14% Similarity=0.109 Sum_probs=245.9
Q ss_pred hhhhhhhhhhhhhHHHHHHHHHHHHhcCCCCcchhhhcccchhhhhcChhhHHHHHHHHHHhCCCChhHHHHHHHHHHHh
Q 012143 9 EVEGKKINKLGKCRSRISSKMDSALEFGVDADGDQSGLGTSSSSREEKVSSLKTGLVHVARKMPKNAHAHFLLGLMYQRL 88 (470)
Q Consensus 9 ~~~~~~~~~~g~~~~a~~~~~~~~l~~~p~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~l~~~~~~~ 88 (470)
-..|..+...|++++|+ ..++++++.+|++...+..+|.+ +...|++++|...++++++.+|.++.++..+|.++...
T Consensus 25 ~~~a~~~~~~~~~~~A~-~~~~~~~~~~~~~~~~~~~l~~~-~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~la~~~~~~ 102 (327)
T 3cv0_A 25 MEEGLSMLKLANLAEAA-LAFEAVCQAAPEREEAWRSLGLT-QAENEKDGLAIIALNHARMLDPKDIAVHAALAVSHTNE 102 (327)
T ss_dssp HHHHHHHHHTTCHHHHH-HHHHHHHHHCTTCHHHHHHHHHH-HHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHhccHHHHH-HHHHHHHHhCCCCHHHHHHHHHH-HHHcCCHHHHHHHHHHHHhcCcCCHHHHHHHHHHHHHc
Confidence 34678899999999999 99999999999999999999999 99999999999999999999999999999999999999
Q ss_pred CChhHHHHHHHHHHHHHhhhhcccchhhhHHHHHHhhhcccccccc-CC-CccccccCcccHHHHHHHHHHhhhcCccch
Q 012143 89 GQPLKAVSSYEKAEEILLRCEADIARPELLSLVQIHHAQCLLPESS-GD-NSLDKELEPEELEEILSKLKESMQSDTRQA 166 (470)
Q Consensus 89 g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~-~~~~~~~~~~~~~~A~~~~~~~~~~~p~~~ 166 (470)
|++++|+..|++++...|......... ..... .......+ +. . +...|++++|+..+++++...|.++
T Consensus 103 ~~~~~A~~~~~~~~~~~~~~~~~~~~~-----~~~~~-~~~~~~~~~~~~~----~~~~~~~~~A~~~~~~~~~~~~~~~ 172 (327)
T 3cv0_A 103 HNANAALASLRAWLLSQPQYEQLGSVN-----LQADV-DIDDLNVQSEDFF----FAAPNEYRECRTLLHAALEMNPNDA 172 (327)
T ss_dssp TCHHHHHHHHHHHHHTSTTTTTC--------------------------CC----TTSHHHHHHHHHHHHHHHHHSTTCH
T ss_pred CCHHHHHHHHHHHHHhCCccHHHHHHH-----hHHHH-HHHHHHHHHHhHH----HHHcccHHHHHHHHHHHHhhCCCCH
Confidence 999999999999999876643211000 00000 00000000 11 1 5678999999999999999999999
Q ss_pred HHHHHHHHHHHHcCChHHHHHHHHHHhhcCCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCChHHHHHHHHHHHh
Q 012143 167 VVWNTLGLILLKSGRLQSSISVLSSLLAVDPNNCDCIGNLGIAYFQSGDMEQSAKCFQDLILKDQNHPAALINYAALLLC 246 (470)
Q Consensus 167 ~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~l~~~~~~ 246 (470)
.++..+|.++...|++++|+..++++++.+|+++.++..+|.++...|++++|+..++++++..|++..++..++.++.
T Consensus 173 ~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~- 251 (327)
T 3cv0_A 173 QLHASLGVLYNLSNNYDSAAANLRRAVELRPDDAQLWNKLGATLANGNRPQEALDAYNRALDINPGYVRVMYNMAVSYS- 251 (327)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHH-
T ss_pred HHHHHHHHHHHHhccHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHH-
Confidence 9999999999999999999999999999999999999999999999999999999999999999999999998888887
Q ss_pred hhcccccccccchhhhhHHHhcCCHHHHHHHHHHHHhcCCC------------CHHHHHHHHHHHHHcCChhHHHHHHHH
Q 012143 247 KYGSVLAGAGANTGEGACLDQASAVNVAKECLLAALKADPK------------AAHIWANLANAYYLTGDHRSSGKCLEK 314 (470)
Q Consensus 247 ~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~p~------------~~~~~~~la~~~~~~g~~~~A~~~~~~ 314 (470)
..|++++|+.+|++++...|+ ++.++..+|.++...|++++|...+++
T Consensus 252 --------------------~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~ 311 (327)
T 3cv0_A 252 --------------------NMSQYDLAAKQLVRAIYMQVGGTTPTGEASREATRSMWDFFRMLLNVMNRPDLVELTYAQ 311 (327)
T ss_dssp --------------------HTTCHHHHHHHHHHHHHHHTTSCC-----CCTHHHHHHHHHHHHHHHTTCHHHHHHHTTC
T ss_pred --------------------HhccHHHHHHHHHHHHHhCCccccccccchhhcCHHHHHHHHHHHHhcCCHHHHHHHHHH
Confidence 799999999999999999999 799999999999999999999999998
Q ss_pred HHhcCCCc
Q 012143 315 AAKLEPNC 322 (470)
Q Consensus 315 a~~~~p~~ 322 (470)
++...|+.
T Consensus 312 ~l~~~~~~ 319 (327)
T 3cv0_A 312 NVEPFAKE 319 (327)
T ss_dssp CSHHHHHH
T ss_pred HHHhcchh
Confidence 88766553
|
| >2h6f_A Protein farnesyltransferase/geranylgeranyltransferase type I alpha subunit; ftase, farnesyltransferase, farnesyl transferase, prenyltransferase, CAAX, RAS, lipid modification, prenylation; HET: SUC FAR; 1.50A {Homo sapiens} SCOP: a.118.6.1 PDB: 1jcq_A* 1ld7_A* 1mzc_A* 1s63_A* 1sa4_A* 1tn6_A* 1ld8_A* 2h6g_A* 2h6h_A* 2h6i_A* 2iej_A* 3e37_A* 2f0y_A* 3ksl_A* 2zir_A* 2zis_A* 1o5m_A* 3ksq_A* 1o1t_A* 1o1s_A* ... | Back alignment and structure |
|---|
Probab=99.97 E-value=2.9e-29 Score=227.17 Aligned_cols=242 Identities=12% Similarity=0.033 Sum_probs=216.9
Q ss_pred HhhhcCccchHHHHHHHHHHHHcCChHHHHHHHHHHhhcCCCChHHHHHHHHHHHHcCC-HHHHHHHHHHHHhhCCCChH
Q 012143 157 ESMQSDTRQAVVWNTLGLILLKSGRLQSSISVLSSLLAVDPNNCDCIGNLGIAYFQSGD-MEQSAKCFQDLILKDQNHPA 235 (470)
Q Consensus 157 ~~~~~~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~la~~~~~~g~-~~~A~~~~~~~l~~~p~~~~ 235 (470)
.++..+|+++.++..+|.++...|++++|+..|++++.++|++..+|+.+|.++..+|+ +++|+..|++++.++|++..
T Consensus 88 ~ai~~~p~~~~a~~~lg~~~~~~g~~~~Al~~~~~al~l~P~~~~a~~~~g~~l~~~g~d~~eAl~~~~~al~l~P~~~~ 167 (382)
T 2h6f_A 88 VQIIYSDKFRDVYDYFRAVLQRDERSERAFKLTRDAIELNAANYTVWHFRRVLLKSLQKDLHEEMNYITAIIEEQPKNYQ 167 (382)
T ss_dssp SEECCCHHHHHHHHHHHHHHHHTCCCHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHCTTCHH
T ss_pred hhhhCChhhHHHHHHHHHHHHHCCChHHHHHHHHHHHHhCccCHHHHHHHHHHHHHcccCHHHHHHHHHHHHHHCCCCHH
Confidence 45778999999999999999999999999999999999999999999999999999997 99999999999999999999
Q ss_pred HHHHHHHHHHhhhcccccccccchhhhhHHHhcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCChhHHHHHHHHH
Q 012143 236 ALINYAALLLCKYGSVLAGAGANTGEGACLDQASAVNVAKECLLAALKADPKAAHIWANLANAYYLTGDHRSSGKCLEKA 315 (470)
Q Consensus 236 ~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~a 315 (470)
+|..+|.++. ..|++++|+.+|+++++++|++..+|.++|.++..+|++++|+.+|+++
T Consensus 168 a~~~~g~~~~---------------------~~g~~~eAl~~~~kal~ldP~~~~a~~~lg~~~~~~g~~~eAl~~~~~a 226 (382)
T 2h6f_A 168 VWHHRRVLVE---------------------WLRDPSQELEFIADILNQDAKNYHAWQHRQWVIQEFKLWDNELQYVDQL 226 (382)
T ss_dssp HHHHHHHHHH---------------------HHTCCTTHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCCTTHHHHHHHH
T ss_pred HHHHHHHHHH---------------------HccCHHHHHHHHHHHHHhCccCHHHHHHHHHHHHHcCChHHHHHHHHHH
Confidence 9999999988 6899999999999999999999999999999999999999999999999
Q ss_pred HhcCCCcccHHHHHHHHHHHHhhhccCchHHhhhhHHHHHHHhhcCCCCCCCcHHHHHHHHHHHhc-cccHHHH-----H
Q 012143 316 AKLEPNCMSTRYAVAVSRIKDAERSQEPTEQLSWAGNEMASILREGDPVQIEPPIAWAGFAAVQKT-HHEVAAA-----F 389 (470)
Q Consensus 316 ~~~~p~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~-~~~~~~A-----~ 389 (470)
++++|++.. +|..+|.++.. .|..++| +
T Consensus 227 l~l~P~~~~----------------------------------------------a~~~lg~~l~~l~~~~~eA~~~~el 260 (382)
T 2h6f_A 227 LKEDVRNNS----------------------------------------------VWNQRYFVISNTTGYNDRAVLEREV 260 (382)
T ss_dssp HHHCTTCHH----------------------------------------------HHHHHHHHHHHTTCSCSHHHHHHHH
T ss_pred HHhCCCCHH----------------------------------------------HHHHHHHHHHHhcCcchHHHHHHHH
Confidence 999999765 45555555555 3443555 4
Q ss_pred HHHHHH--hcchhhhhHhhHHHHHHHhc--cHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHcC--------C-hHHHHH
Q 012143 390 ETEENE--LSKMEECAGAGESAFLDQAS--AVNVAKECLLAALKADPKAAHIWANLANAYYLTG--------D-HRSSGK 456 (470)
Q Consensus 390 ~~~~~~--~~~~~~~~~~~l~~~~~~~~--~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g--------~-~~~A~~ 456 (470)
..+.++ ++|....+|+.+|.++...| ++++|+..++++ +.+|+++.++..+|.+|..+| + +++|++
T Consensus 261 ~~~~~Al~l~P~~~~a~~~l~~ll~~~g~~~~~~a~~~~~~~-~~~p~~~~al~~La~~~~~~~~~~~~~~~~~~~~A~~ 339 (382)
T 2h6f_A 261 QYTLEMIKLVPHNESAWNYLKGILQDRGLSKYPNLLNQLLDL-QPSHSSPYLIAFLVDIYEDMLENQCDNKEDILNKALE 339 (382)
T ss_dssp HHHHHHHHHSTTCHHHHHHHHHHHTTTCGGGCHHHHHHHHHH-TTTCCCHHHHHHHHHHHHHHHHTTCSSHHHHHHHHHH
T ss_pred HHHHHHHHHCCCCHHHHHHHHHHHHccCccchHHHHHHHHHh-ccCCCCHHHHHHHHHHHHHHhcccccchHHHHHHHHH
Confidence 667774 45777788999999999988 699999999998 999999999999999999885 3 589999
Q ss_pred HHHHH-HHhhc
Q 012143 457 CLEKV-LMVYC 466 (470)
Q Consensus 457 ~~~~a-l~~~~ 466 (470)
+|+++ +++-|
T Consensus 340 ~~~~l~~~~DP 350 (382)
T 2h6f_A 340 LCEILAKEKDT 350 (382)
T ss_dssp HHHHHHHTTCG
T ss_pred HHHHHHHHhCc
Confidence 99998 77654
|
| >2pl2_A Hypothetical conserved protein TTC0263; TPR, protein binding; 2.50A {Thermus thermophilus} | Back alignment and structure |
|---|
Probab=99.97 E-value=4.2e-29 Score=209.86 Aligned_cols=211 Identities=16% Similarity=0.185 Sum_probs=172.4
Q ss_pred ccchHHHHHHHHHHHHcCChHHHHHHHHHHhhcCCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCChHHHHHHHH
Q 012143 163 TRQAVVWNTLGLILLKSGRLQSSISVLSSLLAVDPNNCDCIGNLGIAYFQSGDMEQSAKCFQDLILKDQNHPAALINYAA 242 (470)
Q Consensus 163 p~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~l~~ 242 (470)
|.++.+++.+|.++...|++++|+..|+++++.+|+++.++..+|.++...|++++|+..|+++++++|+++.++..+|.
T Consensus 2 p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~~~P~~~~a~~~lg~ 81 (217)
T 2pl2_A 2 QTAEQNPLRLGVQLYALGRYDAALTLFERALKENPQDPEALYWLARTQLKLGLVNPALENGKTLVARTPRYLGGYMVLSE 81 (217)
T ss_dssp --CCHHHHHHHHHHHHTTCHHHHHHHHHHHHTTSSSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHH
T ss_pred CCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHH
Confidence 77889999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHhhhcccccccccchhhhhHHHhcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCChhHHHHHHHHHHhcCCCc
Q 012143 243 LLLCKYGSVLAGAGANTGEGACLDQASAVNVAKECLLAALKADPKAAHIWANLANAYYLTGDHRSSGKCLEKAAKLEPNC 322 (470)
Q Consensus 243 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~p~~ 322 (470)
++...... .+......|++++|+..|+++++++|+++.++..+|.++...|++++|+..|+++++++ ++
T Consensus 82 ~~~~~~~~----------~~~~~~~~g~~~~A~~~~~~al~~~P~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~-~~ 150 (217)
T 2pl2_A 82 AYVALYRQ----------AEDRERGKGYLEQALSVLKDAERVNPRYAPLHLQRGLVYALLGERDKAEASLKQALALE-DT 150 (217)
T ss_dssp HHHHHHHT----------CSSHHHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-CC
T ss_pred HHHHhhhh----------hhhhcccccCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHcCChHHHHHHHHHHHhcc-cc
Confidence 98831000 00011112999999999999999999999999999999999999999999999999998 64
Q ss_pred ccHHHHHHHHHHHHhhhccCchHHhhhhHHHHHHHhhcCCCCCCCcHHHHHHHHHHHhccccHHHHHHHHHHHhcchhhh
Q 012143 323 MSTRYAVAVSRIKDAERSQEPTEQLSWAGNEMASILREGDPVQIEPPIAWAGFAAVQKTHHEVAAAFETEENELSKMEEC 402 (470)
Q Consensus 323 ~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~ 402 (470)
+.++
T Consensus 151 ~~~~---------------------------------------------------------------------------- 154 (217)
T 2pl2_A 151 PEIR---------------------------------------------------------------------------- 154 (217)
T ss_dssp HHHH----------------------------------------------------------------------------
T ss_pred hHHH----------------------------------------------------------------------------
Confidence 4332
Q ss_pred hHhhHHHHHHHhccHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHcCChHHHHHHHHHHH
Q 012143 403 AGAGESAFLDQASAVNVAKECLLAALKADPKAAHIWANLANAYYLTGDHRSSGKCLEKVL 462 (470)
Q Consensus 403 ~~~~l~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al 462 (470)
+.+|.++...|++++|+..|+++++.+|+++.++..+|.++...|++++|+..|+++-
T Consensus 155 --~~la~~~~~~g~~~~A~~~~~~al~~~P~~~~~~~~la~~~~~~g~~~~A~~~~~~~~ 212 (217)
T 2pl2_A 155 --SALAELYLSMGRLDEALAQYAKALEQAPKDLDLRVRYASALLLKGKAEEAARAAALEH 212 (217)
T ss_dssp --HHHHHHHHHHTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHTC---------------
T ss_pred --HHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHccCHHHHHHHHHHHh
Confidence 2344477888999999999999999999999999999999999999999999998764
|
| >2pl2_A Hypothetical conserved protein TTC0263; TPR, protein binding; 2.50A {Thermus thermophilus} | Back alignment and structure |
|---|
Probab=99.96 E-value=1.1e-28 Score=207.35 Aligned_cols=200 Identities=18% Similarity=0.201 Sum_probs=153.1
Q ss_pred CCCcchhhhcccchhhhhcChhhHHHHHHHHHHhCCCChhHHHHHHHHHHHhCChhHHHHHHHHHHHHHhhhhcccchhh
Q 012143 37 VDADGDQSGLGTSSSSREEKVSSLKTGLVHVARKMPKNAHAHFLLGLMYQRLGQPLKAVSSYEKAEEILLRCEADIARPE 116 (470)
Q Consensus 37 p~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~ 116 (470)
|+++..++.+|.. +...|++++|+..|+++++.+|+++.+++.+|.++...|++++|+..|++++++
T Consensus 2 p~~~~~~~~lg~~-~~~~g~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~~------------ 68 (217)
T 2pl2_A 2 QTAEQNPLRLGVQ-LYALGRYDAALTLFERALKENPQDPEALYWLARTQLKLGLVNPALENGKTLVAR------------ 68 (217)
T ss_dssp --CCHHHHHHHHH-HHHTTCHHHHHHHHHHHHTTSSSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH------------
T ss_pred CCcHHHHHHHHHH-HHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh------------
Confidence 6667777777777 777888888888888888888888888888888887777777777777777665
Q ss_pred hHHHHHHhhhccccccccCCCccccccCcccHHHHHHHHHHhhhcCccchHHHHHHHHHHHHc-----------CChHHH
Q 012143 117 LLSLVQIHHAQCLLPESSGDNSLDKELEPEELEEILSKLKESMQSDTRQAVVWNTLGLILLKS-----------GRLQSS 185 (470)
Q Consensus 117 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~-----------~~~~~A 185 (470)
+|+++.++..+|.++... |++++|
T Consensus 69 ---------------------------------------------~P~~~~a~~~lg~~~~~~~~~~~~~~~~~g~~~~A 103 (217)
T 2pl2_A 69 ---------------------------------------------TPRYLGGYMVLSEAYVALYRQAEDRERGKGYLEQA 103 (217)
T ss_dssp ---------------------------------------------CTTCHHHHHHHHHHHHHHHHTCSSHHHHHHHHHHH
T ss_pred ---------------------------------------------CCCcHHHHHHHHHHHHHhhhhhhhhcccccCHHHH
Confidence 566677777778888777 889999
Q ss_pred HHHHHHHhhcCCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCChHHHHHHHHHHHhhhcccccccccchhhhhHH
Q 012143 186 ISVLSSLLAVDPNNCDCIGNLGIAYFQSGDMEQSAKCFQDLILKDQNHPAALINYAALLLCKYGSVLAGAGANTGEGACL 265 (470)
Q Consensus 186 ~~~~~~a~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~ 265 (470)
+..|+++++++|+++.++..+|.++..+|++++|+..|+++++++ +++.++..+|.++.
T Consensus 104 ~~~~~~al~~~P~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~-~~~~~~~~la~~~~-------------------- 162 (217)
T 2pl2_A 104 LSVLKDAERVNPRYAPLHLQRGLVYALLGERDKAEASLKQALALE-DTPEIRSALAELYL-------------------- 162 (217)
T ss_dssp HHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-CCHHHHHHHHHHHH--------------------
T ss_pred HHHHHHHHHhCcccHHHHHHHHHHHHHcCChHHHHHHHHHHHhcc-cchHHHHHHHHHHH--------------------
Confidence 999999999999988899999999999999999999999999888 88888888888777
Q ss_pred HhcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCChhHHHHHHHHHH
Q 012143 266 DQASAVNVAKECLLAALKADPKAAHIWANLANAYYLTGDHRSSGKCLEKAA 316 (470)
Q Consensus 266 ~~~~~~~~A~~~~~~~~~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~a~ 316 (470)
..|++++|+..|+++++.+|+++.++..+|.++...|++++|+..|+++-
T Consensus 163 -~~g~~~~A~~~~~~al~~~P~~~~~~~~la~~~~~~g~~~~A~~~~~~~~ 212 (217)
T 2pl2_A 163 -SMGRLDEALAQYAKALEQAPKDLDLRVRYASALLLKGKAEEAARAAALEH 212 (217)
T ss_dssp -HHTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHTC---------------
T ss_pred -HcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHccCHHHHHHHHHHHh
Confidence 68889999999999999999999999999999999999999988888764
|
| >2xm6_A Protein corresponding to locus C5321 from CFT073 strain; unknown function, SEL1-like repeats; 1.68A {Escherichia coli} | Back alignment and structure |
|---|
Probab=99.96 E-value=2.6e-26 Score=217.97 Aligned_cols=343 Identities=13% Similarity=0.039 Sum_probs=277.2
Q ss_pred HHHHHHHHHHhCCCChhHHHHHHHHHHH----hCChhHHHHHHHHHHHHHhhhhcccchhhhHHHHHHhhhccccccc-c
Q 012143 60 LKTGLVHVARKMPKNAHAHFLLGLMYQR----LGQPLKAVSSYEKAEEILLRCEADIARPELLSLVQIHHAQCLLPES-S 134 (470)
Q Consensus 60 A~~~~~~~l~~~p~~~~~~~~l~~~~~~----~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~ 134 (470)
+...+.++. .+.++.+++.+|.+|.. .+++++|+.+|+++.+... + .+++.+|.++.. .
T Consensus 26 ~~~~~~~~a--~~g~~~a~~~lg~~y~~g~~~~~~~~~A~~~~~~a~~~~~--------~------~a~~~Lg~~y~~g~ 89 (490)
T 2xm6_A 26 NLEQLKQKA--ESGEAKAQLELGYRYFQGNETTKDLTQAMDWFRRAAEQGY--------T------PAEYVLGLRYMNGE 89 (490)
T ss_dssp CHHHHHHHH--HTTCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTTC--------H------HHHHHHHHHHHHTS
T ss_pred HHHHHHHHH--HCCCHHHHHHHHHHHHcCCCCCcCHHHHHHHHHHHHHCCC--------H------HHHHHHHHHHHcCC
Confidence 355555544 47889999999999999 8999999999999987521 1 223334444433 2
Q ss_pred CCCccccccCcccHHHHHHHHHHhhhcCccchHHHHHHHHHHHH----cCChHHHHHHHHHHhhcCCCChHHHHHHHHHH
Q 012143 135 GDNSLDKELEPEELEEILSKLKESMQSDTRQAVVWNTLGLILLK----SGRLQSSISVLSSLLAVDPNNCDCIGNLGIAY 210 (470)
Q Consensus 135 ~~~~~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~----~~~~~~A~~~~~~a~~~~~~~~~~~~~la~~~ 210 (470)
|.. +++++|+.+|+++... .++.+++.+|.+|.. .+++++|+.+|+++.+. .++.+++.+|.+|
T Consensus 90 g~~--------~~~~~A~~~~~~a~~~--~~~~a~~~Lg~~y~~g~g~~~~~~~A~~~~~~a~~~--~~~~a~~~Lg~~y 157 (490)
T 2xm6_A 90 GVP--------QDYAQAVIWYKKAALK--GLPQAQQNLGVMYHEGNGVKVDKAESVKWFRLAAEQ--GRDSGQQSMGDAY 157 (490)
T ss_dssp SSC--------CCHHHHHHHHHHHHHT--TCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHT--TCHHHHHHHHHHH
T ss_pred CCC--------CCHHHHHHHHHHHHHC--CCHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHC--CCHHHHHHHHHHH
Confidence 221 4569999999999875 578999999999999 89999999999999875 5789999999999
Q ss_pred HH----cCCHHHHHHHHHHHHhhCCCChHHHHHHHHHHHhhhcccccccccchhhhhHHHhcCCHHHHHHHHHHHHhcCC
Q 012143 211 FQ----SGDMEQSAKCFQDLILKDQNHPAALINYAALLLCKYGSVLAGAGANTGEGACLDQASAVNVAKECLLAALKADP 286 (470)
Q Consensus 211 ~~----~g~~~~A~~~~~~~l~~~p~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~p 286 (470)
.. .+++++|+..|+++++. .++.++..+|.++.... ...+++++|+.+|+++.+.
T Consensus 158 ~~g~g~~~d~~~A~~~~~~a~~~--~~~~a~~~Lg~~y~~g~-----------------g~~~~~~~A~~~~~~a~~~-- 216 (490)
T 2xm6_A 158 FEGDGVTRDYVMAREWYSKAAEQ--GNVWSCNQLGYMYSRGL-----------------GVERNDAISAQWYRKSATS-- 216 (490)
T ss_dssp HHTSSSCCCHHHHHHHHHHHHHT--TCHHHHHHHHHHHHHTS-----------------SSCCCHHHHHHHHHHHHHT--
T ss_pred HcCCCCCCCHHHHHHHHHHHHHC--CCHHHHHHHHHHHhcCC-----------------CCCcCHHHHHHHHHHHHHC--
Confidence 98 89999999999999875 58999999999987311 0279999999999999975
Q ss_pred CCHHHHHHHHHHHHH----cCChhHHHHHHHHHHhcCCCcccHHHHHHHHHHHHhhhccCchHHhhhhHHHHHHHhhcCC
Q 012143 287 KAAHIWANLANAYYL----TGDHRSSGKCLEKAAKLEPNCMSTRYAVAVSRIKDAERSQEPTEQLSWAGNEMASILREGD 362 (470)
Q Consensus 287 ~~~~~~~~la~~~~~----~g~~~~A~~~~~~a~~~~p~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 362 (470)
.++.++..+|.+|.. .+++++|+.+|++++... ++.+.+.++........ .. .....+...+......
T Consensus 217 ~~~~a~~~lg~~y~~g~g~~~~~~~A~~~~~~a~~~~--~~~a~~~lg~~y~~g~~-~~---~d~~~A~~~~~~a~~~-- 288 (490)
T 2xm6_A 217 GDELGQLHLADMYYFGIGVTQDYTQSRVLFSQSAEQG--NSIAQFRLGYILEQGLA-GA---KEPLKALEWYRKSAEQ-- 288 (490)
T ss_dssp TCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHTTT--CHHHHHHHHHHHHHTTT-SS---CCHHHHHHHHHHHHTT--
T ss_pred CCHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHCC--CHHHHHHHHHHHHCCCC-CC---CCHHHHHHHHHHHHHc--
Confidence 468999999999998 899999999999999764 45666666665443111 11 2223333333333332
Q ss_pred CCCCCcHHHHHHHHHHHhcc-----ccHHHHHHHHHHHhcchhhhhHhhHHHHHHHhc---cHHHHHHHHHHHHhcCCCc
Q 012143 363 PVQIEPPIAWAGFAAVQKTH-----HEVAAAFETEENELSKMEECAGAGESAFLDQAS---AVNVAKECLLAALKADPKA 434 (470)
Q Consensus 363 ~~~~~~~~~~~~l~~~~~~~-----~~~~~A~~~~~~~~~~~~~~~~~~l~~~~~~~~---~~~~A~~~~~~al~~~p~~ 434 (470)
.++.++..+|.++... +++++|+..+.++....+..+++.+|.++...| ++++|+.+|+++++. .+
T Consensus 289 ----~~~~a~~~Lg~~y~~~~~g~~~~~~~A~~~~~~a~~~~~~~a~~~lg~~y~~~g~~~~~~~A~~~~~~a~~~--~~ 362 (490)
T 2xm6_A 289 ----GNSDGQYYLAHLYDKGAEGVAKNREQAISWYTKSAEQGDATAQANLGAIYFRLGSEEEHKKAVEWFRKAAAK--GE 362 (490)
T ss_dssp ----TCHHHHHHHHHHHHHCBTTBCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHSCCHHHHHHHHHHHHHHHHT--TC
T ss_pred ----CCHHHHHHHHHHHHcCCCCCcCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCcccHHHHHHHHHHHHHC--CC
Confidence 3567999999999987 899999999999998888899999999999865 899999999999987 67
Q ss_pred HHHHHHHHHHHHH----cCChHHHHHHHHHHHHhh
Q 012143 435 AHIWANLANAYYL----TGDHRSSGKCLEKVLMVY 465 (470)
Q Consensus 435 ~~~~~~la~~~~~----~g~~~~A~~~~~~al~~~ 465 (470)
+.+++.+|.+|.. .+++++|+.+|+++++..
T Consensus 363 ~~a~~~Lg~~y~~g~g~~~~~~~A~~~~~~A~~~~ 397 (490)
T 2xm6_A 363 KAAQFNLGNALLQGKGVKKDEQQAAIWMRKAAEQG 397 (490)
T ss_dssp HHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHhCC
Confidence 9999999999999 899999999999998853
|
| >2ooe_A Cleavage stimulation factor 77 kDa subunit; HAT domain, structural protein; 3.00A {Mus musculus} SCOP: a.118.8.7 | Back alignment and structure |
|---|
Probab=99.96 E-value=1.8e-26 Score=221.35 Aligned_cols=408 Identities=12% Similarity=0.019 Sum_probs=266.3
Q ss_pred HHHHHhcCCCCcchhhhcccchhhhhcChhhHHHHHHHHHHhCCCChhHHHHHHHHHHHhCChhHHHHHHHHHHHHHhhh
Q 012143 29 MDSALEFGVDADGDQSGLGTSSSSREEKVSSLKTGLVHVARKMPKNAHAHFLLGLMYQRLGQPLKAVSSYEKAEEILLRC 108 (470)
Q Consensus 29 ~~~~l~~~p~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~ 108 (470)
++++++.+|.+...|..++.. ...|++++|...|+++++.+|.++.+|..+|..+...|++++|...|++++...|+.
T Consensus 2 le~al~~~P~~~~~w~~l~~~--~~~~~~~~a~~~~e~al~~~P~~~~~w~~~~~~~~~~~~~~~a~~~~~ral~~~p~~ 79 (530)
T 2ooe_A 2 AEKKLEENPYDLDAWSILIRE--AQNQPIDKARKTYERLVAQFPSSGRFWKLYIEAEIKAKNYDKVEKLFQRCLMKVLHI 79 (530)
T ss_dssp HHHHHHHCTTCHHHHHHHHHH--HHSSCHHHHHHHHHHHHTTCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHTTTCCCH
T ss_pred hhhHhhhCCCCHHHHHHHHHH--HHhCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCh
Confidence 567778888888888877754 457788888888888888888888888888888888888888888888888876632
Q ss_pred hcccchhhhH-----------HHHHHhhhccccccccCCC--c-------cccc---------cCcccHHHHHHHHHHhh
Q 012143 109 EADIARPELL-----------SLVQIHHAQCLLPESSGDN--S-------LDKE---------LEPEELEEILSKLKESM 159 (470)
Q Consensus 109 ~~~~~~~~~~-----------~~~~~~~~~~~~~~~~~~~--~-------~~~~---------~~~~~~~~A~~~~~~~~ 159 (470)
+.......+. ..+...+..+. ...|.. . .... ...|++++|..+|++++
T Consensus 80 ~lw~~~~~~~~~~~~~~~~a~~~~~~~~~~al--~~~g~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~a~~~y~~al 157 (530)
T 2ooe_A 80 DLWKCYLSYVRETKGKLPSYKEKMAQAYDFAL--DKIGMEIMSYQIWVDYINFLKGVEAVGSYAENQRITAVRRVYQRGC 157 (530)
T ss_dssp HHHHHHHHHHHHHTTTSTTHHHHHHHHHHHHH--HHTTTSTTCHHHHHHHHHHHHHSCCCSSTTHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHccchhhHHHHHHHHHHHHH--HHCCCCcccHHHHHHHHHHHhcCCCcccHHHHhHHHHHHHHHHHHH
Confidence 1100000000 00000000000 000100 0 0000 11466677777777777
Q ss_pred hcCccch--HHHHHHHHHHH-------------HcCChHHHHHHHHH------Hhhc-----CCCC-------hHHHHHH
Q 012143 160 QSDTRQA--VVWNTLGLILL-------------KSGRLQSSISVLSS------LLAV-----DPNN-------CDCIGNL 206 (470)
Q Consensus 160 ~~~p~~~--~~~~~l~~~~~-------------~~~~~~~A~~~~~~------a~~~-----~~~~-------~~~~~~l 206 (470)
. .|.+. ..|...+.... ..+++..|...+.. .++. .|.. ...|...
T Consensus 158 ~-~P~~~~~~~~~~~~~~e~~~~~~~~~~~l~~~~~~~~~A~~~~~~~~~~~~~l~~~~~~~~p~~~~~~~~~~~~w~~~ 236 (530)
T 2ooe_A 158 V-NPMINIEQLWRDYNKYEEGINIHLAKKMIEDRSRDYMNARRVAKEYETVMKGLDRNAPSVPPQNTPQEAQQVDMWKKY 236 (530)
T ss_dssp T-SCCTTHHHHHHHHHHHHHHHCHHHHHHHHHTTHHHHHHHHHHHHHHHHHHHHCCSSSCCCCCC--CCHHHHHHHHHHH
T ss_pred h-chhhhHHHHHHHHHHHHHhhchhHHHHHHHHhhHHHHHHHHHHHHHHHHHHHhccccccCCCCCChhHHHHHHHHHHH
Confidence 6 45432 22322222111 23445556555554 3332 2221 1233333
Q ss_pred HHHHHH----cCCH----HHHHHHHHHHHhhCCCChHHHHHHHHHHHhhhcccccccccchhhhhHHHhcCCHH------
Q 012143 207 GIAYFQ----SGDM----EQSAKCFQDLILKDQNHPAALINYAALLLCKYGSVLAGAGANTGEGACLDQASAVN------ 272 (470)
Q Consensus 207 a~~~~~----~g~~----~~A~~~~~~~l~~~p~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------ 272 (470)
...... .++. ..++..|++++..+|.++..|..++..+... .......|+++
T Consensus 237 ~~~e~~~~~~~~~~~~~~~~a~~~y~~al~~~p~~~~~w~~~~~~~~~~--------------~~~~~~~g~~~~a~~~~ 302 (530)
T 2ooe_A 237 IQWEKSNPLRTEDQTLITKRVMFAYEQCLLVLGHHPDIWYEAAQYLEQS--------------SKLLAEKGDMNNAKLFS 302 (530)
T ss_dssp HHHHHHCSSCCSCSHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--------------HHHHHTTTCCHHHHHHH
T ss_pred HHHHHcCCccCCcchhHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHh--------------chhhhhccchhhhhhhh
Confidence 222211 1222 4677888888888888888888888877620 00001268876
Q ss_pred -HHHHHHHHHHh-cCCCCHHHHHHHHHHHHHcCChhHHHHHHHHHHhcCCCcc-cHHHHHHHHHHHHhhhccCchHHhhh
Q 012143 273 -VAKECLLAALK-ADPKAAHIWANLANAYYLTGDHRSSGKCLEKAAKLEPNCM-STRYAVAVSRIKDAERSQEPTEQLSW 349 (470)
Q Consensus 273 -~A~~~~~~~~~-~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~p~~~-~~~~~l~~~~~~~~~~~~~~~~~~~~ 349 (470)
+|+.+|+++++ ..|++..+|..+|.++...|++++|...|+++++..|.++ ..|...+..... ......
T Consensus 303 ~~A~~~~~~Al~~~~p~~~~l~~~~~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~--------~~~~~~ 374 (530)
T 2ooe_A 303 DEAANIYERAISTLLKKNMLLYFAYADYEESRMKYEKVHSIYNRLLAIEDIDPTLVYIQYMKFARR--------AEGIKS 374 (530)
T ss_dssp HHHHHHHHHHTTTTCSSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHSSSSCHHHHHHHHHHHHHH--------HHHHHH
T ss_pred HHHHHHHHHHHHHhCcccHHHHHHHHHHHHhcCCHHHHHHHHHHHhCccccCchHHHHHHHHHHHH--------hcCHHH
Confidence 99999999997 8999999999999999999999999999999999999875 355555442221 111222
Q ss_pred hHHHHHHHhhcCCCCCCCcHHHHHHHHHH-HhccccHHHHHHHHHHHhc--chhhhhHhhHHHHHHHhccHHHHHHHHHH
Q 012143 350 AGNEMASILREGDPVQIEPPIAWAGFAAV-QKTHHEVAAAFETEENELS--KMEECAGAGESAFLDQASAVNVAKECLLA 426 (470)
Q Consensus 350 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~~-~~~~~~~~~A~~~~~~~~~--~~~~~~~~~l~~~~~~~~~~~~A~~~~~~ 426 (470)
+...+...+. .++.....+...+.+ +...|++++|...|.+++. |.....|..++..+...|++++|..+|++
T Consensus 375 A~~~~~~Al~----~~~~~~~~~~~~a~~~~~~~~~~~~A~~~~e~al~~~p~~~~~~~~~~~~~~~~g~~~~Ar~~~~~ 450 (530)
T 2ooe_A 375 GRMIFKKARE----DARTRHHVYVTAALMEYYCSKDKSVAFKIFELGLKKYGDIPEYVLAYIDYLSHLNEDNNTRVLFER 450 (530)
T ss_dssp HHHHHHHHHT----CTTCCTHHHHHHHHHHHHHTCCHHHHHHHHHHHHHHHTTCHHHHHHHHHHHTTTTCHHHHHHHHHH
T ss_pred HHHHHHHHHh----ccCCchHHHHHHHHHHHHHcCChhHHHHHHHHHHHHCCCCHHHHHHHHHHHHhCCCHhhHHHHHHH
Confidence 2223333332 233445556655555 3468999999999999766 55567899999999999999999999999
Q ss_pred HHhcCCCcHH----HHHHHHHHHHHcCChHHHHHHHHHHHHhhcc
Q 012143 427 ALKADPKAAH----IWANLANAYYLTGDHRSSGKCLEKVLMVYCS 467 (470)
Q Consensus 427 al~~~p~~~~----~~~~la~~~~~~g~~~~A~~~~~~al~~~~~ 467 (470)
++...|.++. +|...+......|+.+.+..+++++++.+|+
T Consensus 451 al~~~~~~~~~~~~lw~~~~~~e~~~G~~~~~~~~~~r~~~~~p~ 495 (530)
T 2ooe_A 451 VLTSGSLPPEKSGEIWARFLAFESNIGDLASILKVEKRRFTAFRE 495 (530)
T ss_dssp HHHSCCSCGGGCHHHHHHHHHHHHHSSCHHHHHHHHHHHHHHTHH
T ss_pred HHhccCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCch
Confidence 9998776544 8888888889999999999999999999984
|
| >3u4t_A TPR repeat-containing protein; structural genomics, PSI- protein structure initiative, northeast structural genomics consortium, NESG; 2.28A {Cytophaga hutchinsonii} | Back alignment and structure |
|---|
Probab=99.96 E-value=1.3e-27 Score=208.99 Aligned_cols=263 Identities=13% Similarity=0.067 Sum_probs=219.4
Q ss_pred cchhhhcccchhhhhcChhhHHHHHHHHHHhCCCChhHHHHHHHHHHHhCChhHHHHHHHHHHHHHhhhhcccchhhhHH
Q 012143 40 DGDQSGLGTSSSSREEKVSSLKTGLVHVARKMPKNAHAHFLLGLMYQRLGQPLKAVSSYEKAEEILLRCEADIARPELLS 119 (470)
Q Consensus 40 ~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~ 119 (470)
+..++..|.. +...|++++|+..|+++++.+|+++.++..+|.++...|++++|+..|+++++ .|.+
T Consensus 3 ~~~~~~~a~~-~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~-~~~~----------- 69 (272)
T 3u4t_A 3 DDVEFRYADF-LFKNNNYAEAIEVFNKLEAKKYNSPYIYNRRAVCYYELAKYDLAQKDIETYFS-KVNA----------- 69 (272)
T ss_dssp --CHHHHHHH-HHTTTCHHHHHHHHHHHHHTTCCCSTTHHHHHHHHHHTTCHHHHHHHHHHHHT-TSCT-----------
T ss_pred HHHHHHHHHH-HHHhcCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHHhhHHHHHHHHHHHHh-ccCc-----------
Confidence 4467788888 88999999999999999999999999999999999999999999999988876 2211
Q ss_pred HHHHhhhccccccccCCCccccccCcccHHHHHHHHHHhhhcCccchHHHHHHHHHHHHcCChHHHHHHHHHHhhcCCCC
Q 012143 120 LVQIHHAQCLLPESSGDNSLDKELEPEELEEILSKLKESMQSDTRQAVVWNTLGLILLKSGRLQSSISVLSSLLAVDPNN 199 (470)
Q Consensus 120 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~ 199 (470)
....+.++..+|.++...|++++|+.+|+++++.+|.+
T Consensus 70 ------------------------------------------~~~~~~~~~~lg~~~~~~~~~~~A~~~~~~a~~~~~~~ 107 (272)
T 3u4t_A 70 ------------------------------------------TKAKSADFEYYGKILMKKGQDSLAIQQYQAAVDRDTTR 107 (272)
T ss_dssp ------------------------------------------TTCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTC
T ss_pred ------------------------------------------hhHHHHHHHHHHHHHHHcccHHHHHHHHHHHHhcCccc
Confidence 00125678999999999999999999999999999999
Q ss_pred hHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCChHHHHHHH-HHHHhhhcccccccccchhhhhHHHhcCCHHHHHHHH
Q 012143 200 CDCIGNLGIAYFQSGDMEQSAKCFQDLILKDQNHPAALINYA-ALLLCKYGSVLAGAGANTGEGACLDQASAVNVAKECL 278 (470)
Q Consensus 200 ~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~l~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~ 278 (470)
+.++..+|.++...|++++|+..|++++..+|.++.++..+| .++. .+++++|+.+|
T Consensus 108 ~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~l~~~~~~----------------------~~~~~~A~~~~ 165 (272)
T 3u4t_A 108 LDMYGQIGSYFYNKGNFPLAIQYMEKQIRPTTTDPKVFYELGQAYYY----------------------NKEYVKADSSF 165 (272)
T ss_dssp THHHHHHHHHHHHTTCHHHHHHHHGGGCCSSCCCHHHHHHHHHHHHH----------------------TTCHHHHHHHH
T ss_pred HHHHHHHHHHHHHccCHHHHHHHHHHHhhcCCCcHHHHHHHHHHHHH----------------------HHHHHHHHHHH
Confidence 999999999999999999999999999999999999999999 6654 55999999999
Q ss_pred HHHHhcCCCCHHHHHHHHHHHHHcCC---hhHHHHHHHHHHhcCCCcccHHHHHHHHHHHHhhhccCchHHhhhhHHHHH
Q 012143 279 LAALKADPKAAHIWANLANAYYLTGD---HRSSGKCLEKAAKLEPNCMSTRYAVAVSRIKDAERSQEPTEQLSWAGNEMA 355 (470)
Q Consensus 279 ~~~~~~~p~~~~~~~~la~~~~~~g~---~~~A~~~~~~a~~~~p~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~ 355 (470)
+++++.+|+++.++..+|.++...|+ +++|+..|+++++.....+....
T Consensus 166 ~~a~~~~p~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~---------------------------- 217 (272)
T 3u4t_A 166 VKVLELKPNIYIGYLWRARANAAQDPDTKQGLAKPYYEKLIEVCAPGGAKYK---------------------------- 217 (272)
T ss_dssp HHHHHHSTTCHHHHHHHHHHHHHHSTTCSSCTTHHHHHHHHHHHGGGGGGGH----------------------------
T ss_pred HHHHHhCccchHHHHHHHHHHHHcCcchhhHHHHHHHHHHHHHHhcccccch----------------------------
Confidence 99999999999999999999999999 99999999999987643221000
Q ss_pred HHhhcCCCCCCCcHHHHHHHHHHHhccccHHHHHHHHHHHhcchhhhhHhhHHHHHHHhccHHHHHHHHHHHHhcCCCcH
Q 012143 356 SILREGDPVQIEPPIAWAGFAAVQKTHHEVAAAFETEENELSKMEECAGAGESAFLDQASAVNVAKECLLAALKADPKAA 435 (470)
Q Consensus 356 ~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~p~~~ 435 (470)
.....++..+|.++...|++++|+.+|+++++++|+++
T Consensus 218 ------------------------------------------~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~p~~~ 255 (272)
T 3u4t_A 218 ------------------------------------------DELIEANEYIAYYYTINRDKVKADAAWKNILALDPTNK 255 (272)
T ss_dssp ------------------------------------------HHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCH
T ss_pred ------------------------------------------HHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCccHH
Confidence 00112455667788889999999999999999999999
Q ss_pred HHHHHHHHHHHHcC
Q 012143 436 HIWANLANAYYLTG 449 (470)
Q Consensus 436 ~~~~~la~~~~~~g 449 (470)
.++..++.+....+
T Consensus 256 ~a~~~l~~~~~~~~ 269 (272)
T 3u4t_A 256 KAIDGLKMKLEHHH 269 (272)
T ss_dssp HHHHHHC-------
T ss_pred HHHHHhhhhhcccc
Confidence 99999988876544
|
| >3uq3_A Heat shock protein STI1; HSP90, peptide binding, chaperone; 2.60A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=99.96 E-value=2.8e-27 Score=205.07 Aligned_cols=244 Identities=14% Similarity=0.084 Sum_probs=217.1
Q ss_pred CcchhhhcccchhhhhcChhhHHHHHHHHHHhCCCChhHHHHHHHHHHHhCChhHHHHHHHHHHHHHhhhhcccchhhhH
Q 012143 39 ADGDQSGLGTSSSSREEKVSSLKTGLVHVARKMPKNAHAHFLLGLMYQRLGQPLKAVSSYEKAEEILLRCEADIARPELL 118 (470)
Q Consensus 39 ~~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~ 118 (470)
.+..+..+|.. +...|++++|+..|+++++.+ .++.++..+|.++...|++++|+..|+++++..|... ++..
T Consensus 4 ~a~~~~~~g~~-~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~-----~~~~ 76 (258)
T 3uq3_A 4 MADKEKAEGNK-FYKARQFDEAIEHYNKAWELH-KDITYLNNRAAAEYEKGEYETAISTLNDAVEQGREMR-----ADYK 76 (258)
T ss_dssp HHHHHHHHHHH-HHHTTCHHHHHHHHHHHHHHS-CCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTT-----CCHH
T ss_pred HHHHHHHHHHH-HHHhccHHHHHHHHHHHHHhh-ccHHHHHHHHHHHHHcccHHHHHHHHHHHHHhCcccc-----cchH
Confidence 45678899999 999999999999999999999 9999999999999999999999999999999987642 1222
Q ss_pred HHHHHhhhccccccccCCCccccccCcccHHHHHHHHHHhhhcCccchHHHHHHHHHHHHcCChHHHHHHHHHHhhcCCC
Q 012143 119 SLVQIHHAQCLLPESSGDNSLDKELEPEELEEILSKLKESMQSDTRQAVVWNTLGLILLKSGRLQSSISVLSSLLAVDPN 198 (470)
Q Consensus 119 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~ 198 (470)
....++..++.++ ...|++++|+..+++++...|. +.++...|++++|+..+++++..+|.
T Consensus 77 ~~~~~~~~l~~~~-----------~~~~~~~~A~~~~~~a~~~~~~--------~~~~~~~~~~~~a~~~~~~~~~~~~~ 137 (258)
T 3uq3_A 77 VISKSFARIGNAY-----------HKLGDLKKTIEYYQKSLTEHRT--------ADILTKLRNAEKELKKAEAEAYVNPE 137 (258)
T ss_dssp HHHHHHHHHHHHH-----------HHTTCHHHHHHHHHHHHHHCCC--------HHHHHHHHHHHHHHHHHHHHHHCCHH
T ss_pred HHHHHHHHHHHHH-----------HHcccHHHHHHHHHHHHhcCch--------hHHHHHHhHHHHHHHHHHHHHHcCcc
Confidence 2234555566554 4566779999999999999887 56788889999999999999999999
Q ss_pred ChHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCChHHHHHHHHHHHhhhcccccccccchhhhhHHHhcCCHHHHHHHH
Q 012143 199 NCDCIGNLGIAYFQSGDMEQSAKCFQDLILKDQNHPAALINYAALLLCKYGSVLAGAGANTGEGACLDQASAVNVAKECL 278 (470)
Q Consensus 199 ~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~ 278 (470)
++.++..+|.++...|++++|+..|++++..+|.++.++..+|.++. ..|++++|+.+|
T Consensus 138 ~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~---------------------~~~~~~~A~~~~ 196 (258)
T 3uq3_A 138 KAEEARLEGKEYFTKSDWPNAVKAYTEMIKRAPEDARGYSNRAAALA---------------------KLMSFPEAIADC 196 (258)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHH---------------------HTTCHHHHHHHH
T ss_pred hHHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCcccHHHHHHHHHHHH---------------------HhCCHHHHHHHH
Confidence 99999999999999999999999999999999999999999888887 799999999999
Q ss_pred HHHHhcCCCCHHHHHHHHHHHHHcCChhHHHHHHHHHHhcC------CCcccHHHHH
Q 012143 279 LAALKADPKAAHIWANLANAYYLTGDHRSSGKCLEKAAKLE------PNCMSTRYAV 329 (470)
Q Consensus 279 ~~~~~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~------p~~~~~~~~l 329 (470)
+++++.+|+++.++..+|.++...|++++|+.+|++++++. |++...+..+
T Consensus 197 ~~al~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~p~~~~~~~~l 253 (258)
T 3uq3_A 197 NKAIEKDPNFVRAYIRKATAQIAVKEYASALETLDAARTKDAEVNNGSSAREIDQLY 253 (258)
T ss_dssp HHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHTTTTHHHHHHHH
T ss_pred HHHHHhCHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHhChhhcCCCchHHHHHHH
Confidence 99999999999999999999999999999999999999999 7766554433
|
| >3u4t_A TPR repeat-containing protein; structural genomics, PSI- protein structure initiative, northeast structural genomics consortium, NESG; 2.28A {Cytophaga hutchinsonii} | Back alignment and structure |
|---|
Probab=99.96 E-value=9.9e-27 Score=203.40 Aligned_cols=244 Identities=12% Similarity=0.094 Sum_probs=212.4
Q ss_pred hhhhhhhhhhhhhhhhHHHHHHHHHHHHhcCCCCcchhhhcccchhhhhcChhhHHHHHHHHHHhCCCChh----HHHHH
Q 012143 6 DVAEVEGKKINKLGKCRSRISSKMDSALEFGVDADGDQSGLGTSSSSREEKVSSLKTGLVHVARKMPKNAH----AHFLL 81 (470)
Q Consensus 6 ~~~~~~~~~~~~~g~~~~a~~~~~~~~l~~~p~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~p~~~~----~~~~l 81 (470)
+..-..|..+...|++++|+ ..++++++.+|++...++.+|.+ +...|++++|+..++++++ .|.++. ++..+
T Consensus 4 ~~~~~~a~~~~~~~~~~~A~-~~~~~~l~~~p~~~~~~~~l~~~-~~~~~~~~~A~~~~~~a~~-~~~~~~~~~~~~~~l 80 (272)
T 3u4t_A 4 DVEFRYADFLFKNNNYAEAI-EVFNKLEAKKYNSPYIYNRRAVC-YYELAKYDLAQKDIETYFS-KVNATKAKSADFEYY 80 (272)
T ss_dssp -CHHHHHHHHHTTTCHHHHH-HHHHHHHHTTCCCSTTHHHHHHH-HHHTTCHHHHHHHHHHHHT-TSCTTTCCHHHHHHH
T ss_pred HHHHHHHHHHHHhcCHHHHH-HHHHHHHHhCCCcHHHHHHHHHH-HHHHhhHHHHHHHHHHHHh-ccCchhHHHHHHHHH
Confidence 34455788899999999999 99999999999999999999999 9999999999999999999 555544 48999
Q ss_pred HHHHHHhCChhHHHHHHHHHHHHHhhhhcccchhhhHHHHHHhhhccccccccCCCccccccCcccHHHHHHHHHHhhhc
Q 012143 82 GLMYQRLGQPLKAVSSYEKAEEILLRCEADIARPELLSLVQIHHAQCLLPESSGDNSLDKELEPEELEEILSKLKESMQS 161 (470)
Q Consensus 82 ~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~ 161 (470)
|.++...|++++|+..|+++++.
T Consensus 81 g~~~~~~~~~~~A~~~~~~a~~~--------------------------------------------------------- 103 (272)
T 3u4t_A 81 GKILMKKGQDSLAIQQYQAAVDR--------------------------------------------------------- 103 (272)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHH---------------------------------------------------------
T ss_pred HHHHHHcccHHHHHHHHHHHHhc---------------------------------------------------------
Confidence 99999999999999999888765
Q ss_pred CccchHHHHHHHHHHHHcCChHHHHHHHHHHhhcCCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCChHHHHHHH
Q 012143 162 DTRQAVVWNTLGLILLKSGRLQSSISVLSSLLAVDPNNCDCIGNLGIAYFQSGDMEQSAKCFQDLILKDQNHPAALINYA 241 (470)
Q Consensus 162 ~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~l~ 241 (470)
+|.++.++..+|.++...|++++|+.+|+++++.+|.++.++..+|......+++++|+..|+++++.+|++..++..++
T Consensus 104 ~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~~~ 183 (272)
T 3u4t_A 104 DTTRLDMYGQIGSYFYNKGNFPLAIQYMEKQIRPTTTDPKVFYELGQAYYYNKEYVKADSSFVKVLELKPNIYIGYLWRA 183 (272)
T ss_dssp STTCTHHHHHHHHHHHHTTCHHHHHHHHGGGCCSSCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHH
T ss_pred CcccHHHHHHHHHHHHHccCHHHHHHHHHHHhhcCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCccchHHHHHHH
Confidence 45667788999999999999999999999999999999999999994444556999999999999999999999888888
Q ss_pred HHHHhhhcccccccccchhhhhHHHhcCC---HHHHHHHHHHHHhcC---CC-----CHHHHHHHHHHHHHcCChhHHHH
Q 012143 242 ALLLCKYGSVLAGAGANTGEGACLDQASA---VNVAKECLLAALKAD---PK-----AAHIWANLANAYYLTGDHRSSGK 310 (470)
Q Consensus 242 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~A~~~~~~~~~~~---p~-----~~~~~~~la~~~~~~g~~~~A~~ 310 (470)
.++. ..|+ +++|+..|+++++.. |+ ...++..+|.++...|++++|+.
T Consensus 184 ~~~~---------------------~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~ 242 (272)
T 3u4t_A 184 RANA---------------------AQDPDTKQGLAKPYYEKLIEVCAPGGAKYKDELIEANEYIAYYYTINRDKVKADA 242 (272)
T ss_dssp HHHH---------------------HHSTTCSSCTTHHHHHHHHHHHGGGGGGGHHHHHHHHHHHHHHHHHTTCHHHHHH
T ss_pred HHHH---------------------HcCcchhhHHHHHHHHHHHHHHhcccccchHHHHHHHHHHHHHHHHcCCHHHHHH
Confidence 8877 4566 888999999998875 44 23688899999999999999999
Q ss_pred HHHHHHhcCCCcccHHHHHH
Q 012143 311 CLEKAAKLEPNCMSTRYAVA 330 (470)
Q Consensus 311 ~~~~a~~~~p~~~~~~~~l~ 330 (470)
+|+++++++|+++.++-.+.
T Consensus 243 ~~~~al~~~p~~~~a~~~l~ 262 (272)
T 3u4t_A 243 AWKNILALDPTNKKAIDGLK 262 (272)
T ss_dssp HHHHHHHHCTTCHHHHHHHC
T ss_pred HHHHHHhcCccHHHHHHHhh
Confidence 99999999999987766553
|
| >3sf4_A G-protein-signaling modulator 2; tetratricopeptide repeat, TPR, cell polarity, asymmetric CEL division, mitotic spindle orientation; 2.60A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.95 E-value=1.4e-27 Score=221.54 Aligned_cols=307 Identities=13% Similarity=0.078 Sum_probs=243.4
Q ss_pred CcchhhhcccchhhhhcChhhHHHHHHHHHHhCCCCh----hHHHHHHHHHHHhCChhHHHHHHHHHHHHHhhhhcccch
Q 012143 39 ADGDQSGLGTSSSSREEKVSSLKTGLVHVARKMPKNA----HAHFLLGLMYQRLGQPLKAVSSYEKAEEILLRCEADIAR 114 (470)
Q Consensus 39 ~~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~p~~~----~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~ 114 (470)
....++..|.. +...|++++|+..|+++++..|.++ .++..+|.++...|++++|+.+|++++...+..
T Consensus 8 ~~~~l~~~g~~-~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~------ 80 (406)
T 3sf4_A 8 SCLELALEGER-LCKSGDCRAGVSFFEAAVQVGTEDLKTLSAIYSQLGNAYFYLHDYAKALEYHHHDLTLARTI------ 80 (406)
T ss_dssp CHHHHHHHHHH-HHHTTCHHHHHHHHHHHHHHCCSCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHT------
T ss_pred HHHHHHHHHHH-HHHhccHHHHHHHHHHHHhcCcccHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHhc------
Confidence 34456778888 8888899999999999888888874 578888888988899999988888888763221
Q ss_pred hhhHHHHHHhhhccccccccCCCccccccCcccHHHHHHHHHHhhhcCccchHHHHHHHHHHHHcCChHHHHHHHHHHhh
Q 012143 115 PELLSLVQIHHAQCLLPESSGDNSLDKELEPEELEEILSKLKESMQSDTRQAVVWNTLGLILLKSGRLQSSISVLSSLLA 194 (470)
Q Consensus 115 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~ 194 (470)
...|..+.++..+|.++...|++++|+.++++++.
T Consensus 81 ---------------------------------------------~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~ 115 (406)
T 3sf4_A 81 ---------------------------------------------GDQLGEAKASGNLGNTLKVLGNFDEAIVCCQRHLD 115 (406)
T ss_dssp ---------------------------------------------TCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred ---------------------------------------------cccHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 11234467888999999999999999999999998
Q ss_pred cCCCC------hHHHHHHHHHHHHcCC--------------------HHHHHHHHHHHHhhCCC------ChHHHHHHHH
Q 012143 195 VDPNN------CDCIGNLGIAYFQSGD--------------------MEQSAKCFQDLILKDQN------HPAALINYAA 242 (470)
Q Consensus 195 ~~~~~------~~~~~~la~~~~~~g~--------------------~~~A~~~~~~~l~~~p~------~~~~~~~l~~ 242 (470)
+.|.. ..++..+|.++...|+ +++|+..+++++.+.+. ...++..+
T Consensus 116 ~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~~~~~~~~~~~~~~a~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l-- 193 (406)
T 3sf4_A 116 ISRELNDKVGEARALYNLGNVYHAKGKSFGCPGPQDVGEFPEEVRDALQAAVDFYEENLSLVTALGDRAAQGRAFGNL-- 193 (406)
T ss_dssp HHHHHTCHHHHHHHHHHHHHHHHHHHHTCC-------CCCCHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHH--
T ss_pred HHHhcccccchHHHHHHHHHHHHHcCCcccccccchhhhhhhhHHHHHHHHHHHHHHHHHHHHhccCcHHHHHHHHHH--
Confidence 86643 4489999999999999 99999999999876322 22334444
Q ss_pred HHHhhhcccccccccchhhhhHHHhcCCHHHHHHHHHHHHhcCCCCH------HHHHHHHHHHHHcCChhHHHHHHHHHH
Q 012143 243 LLLCKYGSVLAGAGANTGEGACLDQASAVNVAKECLLAALKADPKAA------HIWANLANAYYLTGDHRSSGKCLEKAA 316 (470)
Q Consensus 243 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~p~~~------~~~~~la~~~~~~g~~~~A~~~~~~a~ 316 (470)
|.++...|++++|+.+++++++..|... .++..+|.++...|++++|+.++++++
T Consensus 194 -------------------a~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al 254 (406)
T 3sf4_A 194 -------------------GNTHYLLGNFRDAVIAHEQRLLIAKEFGDKAAERRAYSNLGNAYIFLGEFETASEYYKKTL 254 (406)
T ss_dssp -------------------HHHHHHHTBHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred -------------------HHHHHHccCHHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHcCChHHHHHHHHHHH
Confidence 4455589999999999999998866543 389999999999999999999999999
Q ss_pred hcCCCcccHHHHHHHHHHHHhhhccCchHHhhhhHHHHHHHhhcCCCCCCCcHHHHHHHHHHHhccccHHHHHHHHHHHh
Q 012143 317 KLEPNCMSTRYAVAVSRIKDAERSQEPTEQLSWAGNEMASILREGDPVQIEPPIAWAGFAAVQKTHHEVAAAFETEENEL 396 (470)
Q Consensus 317 ~~~p~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~ 396 (470)
...|....... ...++..+|.++...|++++|+..+.+.+
T Consensus 255 ~~~~~~~~~~~----------------------------------------~~~~~~~la~~~~~~g~~~~A~~~~~~a~ 294 (406)
T 3sf4_A 255 LLARQLKDRAV----------------------------------------EAQSCYSLGNTYTLLQDYEKAIDYHLKHL 294 (406)
T ss_dssp HHHHHTTCHHH----------------------------------------HHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHhCcCchH----------------------------------------HHHHHHHHHHHHHHhCcHHHHHHHHHHHH
Confidence 87765432111 13478899999999999999999999866
Q ss_pred cchh--------hhhHhhHHHHHHHhccHHHHHHHHHHHHhcCC------CcHHHHHHHHHHHHHcCChHHHHHHH
Q 012143 397 SKME--------ECAGAGESAFLDQASAVNVAKECLLAALKADP------KAAHIWANLANAYYLTGDHRSSGKCL 458 (470)
Q Consensus 397 ~~~~--------~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~p------~~~~~~~~la~~~~~~g~~~~A~~~~ 458 (470)
...+ ..++..+|.++...|++++|+.+|++++++.+ ....++..+|.++...|+...+...+
T Consensus 295 ~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~~~~~~ 370 (406)
T 3sf4_A 295 AIAQELNDRIGEGRACWSLGNAYTALGNHDQAMHFAEKHLEISREVGDKSGELTARLNLSDLQMVLGLSYSTNNSI 370 (406)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHTTSCC----
T ss_pred HHHHhcCCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCcchhHHHHHHHHHHHHhhHhHHHHHHH
Confidence 5221 35688999999999999999999999998743 34778999999999999875444333
|
| >3mkr_A Coatomer subunit epsilon; tetratricopeptide repeats (TPR), beta-hairpin, alpha-solenoi transport protein; 2.60A {Bos taurus} | Back alignment and structure |
|---|
Probab=99.95 E-value=1.9e-26 Score=202.36 Aligned_cols=229 Identities=11% Similarity=0.075 Sum_probs=189.0
Q ss_pred hhhhcChhhHHHHHHHHHHhCCCC-hhHHHHHHHHHHHhCChhHHHHHHHHHHHHHhhhhcccchhhhHHHHHHhhhccc
Q 012143 51 SSREEKVSSLKTGLVHVARKMPKN-AHAHFLLGLMYQRLGQPLKAVSSYEKAEEILLRCEADIARPELLSLVQIHHAQCL 129 (470)
Q Consensus 51 ~~~~~~~~~A~~~~~~~l~~~p~~-~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~ 129 (470)
.+..|++..|+..++++...+|++ .++...++.+|...|++++|+..++.. +| +.. ..+..++.
T Consensus 9 ~~~~g~y~~ai~~~~~~~~~~p~~~~e~~~~l~r~yi~~g~~~~al~~~~~~---~~--------~~~----~a~~~la~ 73 (291)
T 3mkr_A 9 AFYIGSYQQCINEAQRVKPSSPERDVERDVFLYRAYLAQRKYGVVLDEIKPS---SA--------PEL----QAVRMFAE 73 (291)
T ss_dssp HHHTTCHHHHHHHHHHSCCCSHHHHHHHHHHHHHHHHHTTCHHHHHHHSCTT---SC--------HHH----HHHHHHHH
T ss_pred HHHHHHHHHHHHHHHhcccCCchhhHHHHHHHHHHHHHCCCHHHHHHHhccc---CC--------hhH----HHHHHHHH
Confidence 567899999999999887777877 468888999999999999999877552 11 111 12222222
Q ss_pred cccccCCCccccccCcccHHHHHHHHHHhhhc--CccchHHHHHHHHHHHHcCChHHHHHHHHHHhhcCCCChHHHHHHH
Q 012143 130 LPESSGDNSLDKELEPEELEEILSKLKESMQS--DTRQAVVWNTLGLILLKSGRLQSSISVLSSLLAVDPNNCDCIGNLG 207 (470)
Q Consensus 130 ~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~--~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~la 207 (470)
. +...++.++|++.+++++.. +|+++.+++.+|.++...|++++|+..+++ |.++.++..+|
T Consensus 74 ~-----------~~~~~~~~~A~~~l~~ll~~~~~P~~~~~~~~la~~~~~~g~~~~Al~~l~~-----~~~~~~~~~l~ 137 (291)
T 3mkr_A 74 Y-----------LASHSRRDAIVAELDREMSRSVDVTNTTFLLMAASIYFYDQNPDAALRTLHQ-----GDSLECMAMTV 137 (291)
T ss_dssp H-----------HHCSTTHHHHHHHHHHHHHSCCCCSCHHHHHHHHHHHHHTTCHHHHHHHHTT-----CCSHHHHHHHH
T ss_pred H-----------HcCCCcHHHHHHHHHHHHhcccCCCCHHHHHHHHHHHHHCCCHHHHHHHHhC-----CCCHHHHHHHH
Confidence 2 34567789999999999875 699999999999999999999999999998 89999999999
Q ss_pred HHHHHcCCHHHHHHHHHHHHhhCCCChHHHHHHHHHHHhhhcccccccccchhhhhHHHhcCCHHHHHHHHHHHHhcCCC
Q 012143 208 IAYFQSGDMEQSAKCFQDLILKDQNHPAALINYAALLLCKYGSVLAGAGANTGEGACLDQASAVNVAKECLLAALKADPK 287 (470)
Q Consensus 208 ~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~p~ 287 (470)
.++..+|++++|+..|+++++.+|++.......+.+.. +...|++++|+.+|+++++..|+
T Consensus 138 ~~~~~~g~~~~A~~~l~~~~~~~p~~~~~~l~~a~~~l-------------------~~~~~~~~eA~~~~~~~l~~~p~ 198 (291)
T 3mkr_A 138 QILLKLDRLDLARKELKKMQDQDEDATLTQLATAWVSL-------------------AAGGEKLQDAYYIFQEMADKCSP 198 (291)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHH-------------------HHCTTHHHHHHHHHHHHHHHSCC
T ss_pred HHHHHCCCHHHHHHHHHHHHhhCcCcHHHHHHHHHHHH-------------------HhCchHHHHHHHHHHHHHHhCCC
Confidence 99999999999999999999999988644333332222 12468999999999999999999
Q ss_pred CHHHHHHHHHHHHHcCChhHHHHHHHHHHhcCCCcccHHHHH
Q 012143 288 AAHIWANLANAYYLTGDHRSSGKCLEKAAKLEPNCMSTRYAV 329 (470)
Q Consensus 288 ~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~p~~~~~~~~l 329 (470)
++.++..+|.++..+|++++|...|++++..+|+++.++.++
T Consensus 199 ~~~~~~~la~~~~~~g~~~eA~~~l~~al~~~p~~~~~l~~l 240 (291)
T 3mkr_A 199 TLLLLNGQAACHMAQGRWEAAEGVLQEALDKDSGHPETLINL 240 (291)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHH
T ss_pred cHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHH
Confidence 999999999999999999999999999999999977554433
|
| >3uq3_A Heat shock protein STI1; HSP90, peptide binding, chaperone; 2.60A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=99.95 E-value=8.2e-27 Score=202.11 Aligned_cols=237 Identities=16% Similarity=0.134 Sum_probs=219.5
Q ss_pred hhhhhhhhhhhhhhhHHHHHHHHHHHHhcCCCCcchhhhcccchhhhhcChhhHHHHHHHHHHhCCCC-------hhHHH
Q 012143 7 VAEVEGKKINKLGKCRSRISSKMDSALEFGVDADGDQSGLGTSSSSREEKVSSLKTGLVHVARKMPKN-------AHAHF 79 (470)
Q Consensus 7 ~~~~~~~~~~~~g~~~~a~~~~~~~~l~~~p~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~p~~-------~~~~~ 79 (470)
.....|..+...|++.+|+ ..+.++++.+ ++...+..+|.+ +...|++++|+..++++++.+|++ +.++.
T Consensus 7 ~~~~~g~~~~~~~~~~~A~-~~~~~a~~~~-~~~~~~~~~~~~-~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~ 83 (258)
T 3uq3_A 7 KEKAEGNKFYKARQFDEAI-EHYNKAWELH-KDITYLNNRAAA-EYEKGEYETAISTLNDAVEQGREMRADYKVISKSFA 83 (258)
T ss_dssp HHHHHHHHHHHTTCHHHHH-HHHHHHHHHS-CCTHHHHHHHHH-HHHTTCHHHHHHHHHHHHHHHHHTTCCHHHHHHHHH
T ss_pred HHHHHHHHHHHhccHHHHH-HHHHHHHHhh-ccHHHHHHHHHH-HHHcccHHHHHHHHHHHHHhCcccccchHHHHHHHH
Confidence 3445788899999999999 9999999999 889999999999 999999999999999999999877 78999
Q ss_pred HHHHHHHHhCChhHHHHHHHHHHHHHhhhhcccchhhhHHHHHHhhhccccccccCCCccccccCcccHHHHHHHHHHhh
Q 012143 80 LLGLMYQRLGQPLKAVSSYEKAEEILLRCEADIARPELLSLVQIHHAQCLLPESSGDNSLDKELEPEELEEILSKLKESM 159 (470)
Q Consensus 80 ~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~ 159 (470)
.+|.++...|++++|+..|++++...|... . +...|++++|+..+++++
T Consensus 84 ~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~-------~------------------------~~~~~~~~~a~~~~~~~~ 132 (258)
T 3uq3_A 84 RIGNAYHKLGDLKKTIEYYQKSLTEHRTAD-------I------------------------LTKLRNAEKELKKAEAEA 132 (258)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHCCCHH-------H------------------------HHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHcccHHHHHHHHHHHHhcCchhH-------H------------------------HHHHhHHHHHHHHHHHHH
Confidence 999999999999999999999999865421 1 345678899999999999
Q ss_pred hcCccchHHHHHHHHHHHHcCChHHHHHHHHHHhhcCCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCChHHHHH
Q 012143 160 QSDTRQAVVWNTLGLILLKSGRLQSSISVLSSLLAVDPNNCDCIGNLGIAYFQSGDMEQSAKCFQDLILKDQNHPAALIN 239 (470)
Q Consensus 160 ~~~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~ 239 (470)
..+|.++.++..+|.++...|++++|+..|+++++.+|.++.++..+|.++...|++++|+..+++++..+|+++.++..
T Consensus 133 ~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~ 212 (258)
T 3uq3_A 133 YVNPEKAEEARLEGKEYFTKSDWPNAVKAYTEMIKRAPEDARGYSNRAAALAKLMSFPEAIADCNKAIEKDPNFVRAYIR 212 (258)
T ss_dssp HCCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHH
T ss_pred HcCcchHHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCcccHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHhhhcccccccccchhhhhHHHhcCCHHHHHHHHHHHHhcC------CCCHHHHHHHHHH
Q 012143 240 YAALLLCKYGSVLAGAGANTGEGACLDQASAVNVAKECLLAALKAD------PKAAHIWANLANA 298 (470)
Q Consensus 240 l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~------p~~~~~~~~la~~ 298 (470)
+|.++. ..|++++|+.+|++++++. |++..++..++.+
T Consensus 213 l~~~~~---------------------~~g~~~~A~~~~~~a~~~~~~~~~~p~~~~~~~~l~~~ 256 (258)
T 3uq3_A 213 KATAQI---------------------AVKEYASALETLDAARTKDAEVNNGSSAREIDQLYYKA 256 (258)
T ss_dssp HHHHHH---------------------HTTCHHHHHHHHHHHHHHHHHHHTTTTHHHHHHHHHHT
T ss_pred HHHHHH---------------------HHhhHHHHHHHHHHHHHhChhhcCCCchHHHHHHHHHh
Confidence 988887 7999999999999999999 8888888887765
|
| >1xnf_A Lipoprotein NLPI; TPR, tetratricopeptide, structural genomi unknown function; 1.98A {Escherichia coli} SCOP: a.118.8.1 | Back alignment and structure |
|---|
Probab=99.95 E-value=9.5e-26 Score=197.43 Aligned_cols=245 Identities=15% Similarity=0.095 Sum_probs=212.7
Q ss_pred ccCcccHHHHHHHHHHhhhc----CccchHHHHHHHHHHHHcCChHHHHHHHHHHhhcCCCChHHHHHHHHHHHHcCCHH
Q 012143 142 ELEPEELEEILSKLKESMQS----DTRQAVVWNTLGLILLKSGRLQSSISVLSSLLAVDPNNCDCIGNLGIAYFQSGDME 217 (470)
Q Consensus 142 ~~~~~~~~~A~~~~~~~~~~----~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~la~~~~~~g~~~ 217 (470)
....|++++|+..+++++.. .|.++.++..+|.++...|++++|+..|+++++.+|+++.++..+|.++...|+++
T Consensus 15 ~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~~~~~ 94 (275)
T 1xnf_A 15 LQPTLQQEVILARMEQILASRALTDDERAQLLYERGVLYDSLGLRALARNDFSQALAIRPDMPEVFNYLGIYLTQAGNFD 94 (275)
T ss_dssp CCCCHHHHHHHHHHHHHHTSSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHTTCHH
T ss_pred cCccchHHHHHHHHHHHHhcccccCchhHHHHHHHHHHHHHcccHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHccCHH
Confidence 45779999999999999987 46778899999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHhhCCCChHHHHHHHHHHHhhhcccccccccchhhhhHHHhcCCHHHHHHHHHHHHhcCCCCHHHHHHHHH
Q 012143 218 QSAKCFQDLILKDQNHPAALINYAALLLCKYGSVLAGAGANTGEGACLDQASAVNVAKECLLAALKADPKAAHIWANLAN 297 (470)
Q Consensus 218 ~A~~~~~~~l~~~p~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~la~ 297 (470)
+|+..|++++..+|.++.++..+|.++. ..|++++|+.+|+++++..|+++.....++.
T Consensus 95 ~A~~~~~~al~~~~~~~~~~~~la~~~~---------------------~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~ 153 (275)
T 1xnf_A 95 AAYEAFDSVLELDPTYNYAHLNRGIALY---------------------YGGRDKLAQDDLLAFYQDDPNDPFRSLWLYL 153 (275)
T ss_dssp HHHHHHHHHHHHCTTCTHHHHHHHHHHH---------------------HTTCHHHHHHHHHHHHHHCTTCHHHHHHHHH
T ss_pred HHHHHHHHHHhcCccccHHHHHHHHHHH---------------------HhccHHHHHHHHHHHHHhCCCChHHHHHHHH
Confidence 9999999999999999999999988887 7999999999999999999999877766664
Q ss_pred HHHHcCChhHHHHHHHHHHhcCCCcccHHHHHHHHHHHHhhhccCchHHhhhhHHHHHHHhhcCCCCCCCcHHHHHHHHH
Q 012143 298 AYYLTGDHRSSGKCLEKAAKLEPNCMSTRYAVAVSRIKDAERSQEPTEQLSWAGNEMASILREGDPVQIEPPIAWAGFAA 377 (470)
Q Consensus 298 ~~~~~g~~~~A~~~~~~a~~~~p~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ 377 (470)
+ ...|++++|+..+++++...|++...+ .++.
T Consensus 154 ~-~~~~~~~~A~~~~~~~~~~~~~~~~~~-----------------------------------------------~~~~ 185 (275)
T 1xnf_A 154 A-EQKLDEKQAKEVLKQHFEKSDKEQWGW-----------------------------------------------NIVE 185 (275)
T ss_dssp H-HHHHCHHHHHHHHHHHHHHSCCCSTHH-----------------------------------------------HHHH
T ss_pred H-HHhcCHHHHHHHHHHHHhcCCcchHHH-----------------------------------------------HHHH
Confidence 4 667999999999999999988754322 2445
Q ss_pred HHhccccHHHHHHHHHHHhcchh------hhhHhhHHHHHHHhccHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHcCCh
Q 012143 378 VQKTHHEVAAAFETEENELSKME------ECAGAGESAFLDQASAVNVAKECLLAALKADPKAAHIWANLANAYYLTGDH 451 (470)
Q Consensus 378 ~~~~~~~~~~A~~~~~~~~~~~~------~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~ 451 (470)
.+...++.++|+..+.+.+...+ ...++.+|.++...|++++|+.+|+++++.+|++... .+.++..+|++
T Consensus 186 ~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~---~~~~~~~l~~~ 262 (275)
T 1xnf_A 186 FYLGNISEQTLMERLKADATDNTSLAEHLSETNFYLGKYYLSLGDLDSATALFKLAVANNVHNFVE---HRYALLELSLL 262 (275)
T ss_dssp HHTTSSCHHHHHHHHHHHCCSHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCCTTCHH---HHHHHHHHHHH
T ss_pred HHHHhcCHHHHHHHHHHHhcccccccccccHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCchhHHH---HHHHHHHHHHH
Confidence 56667777888888888766444 5778999999999999999999999999999987544 47788999999
Q ss_pred HHHHHHH
Q 012143 452 RSSGKCL 458 (470)
Q Consensus 452 ~~A~~~~ 458 (470)
++|++.|
T Consensus 263 ~~a~~~~ 269 (275)
T 1xnf_A 263 GQDQDDL 269 (275)
T ss_dssp HHC----
T ss_pred HhhHHHH
Confidence 9999887
|
| >3mkr_A Coatomer subunit epsilon; tetratricopeptide repeats (TPR), beta-hairpin, alpha-solenoi transport protein; 2.60A {Bos taurus} | Back alignment and structure |
|---|
Probab=99.95 E-value=1.3e-25 Score=196.88 Aligned_cols=253 Identities=11% Similarity=0.055 Sum_probs=218.2
Q ss_pred cCcccHHHHHHHHHHhhhcCccc-hHHHHHHHHHHHHcCChHHHHHHHHHHhhcCCCChHHHHHHHHHHHHcCCHHHHHH
Q 012143 143 LEPEELEEILSKLKESMQSDTRQ-AVVWNTLGLILLKSGRLQSSISVLSSLLAVDPNNCDCIGNLGIAYFQSGDMEQSAK 221 (470)
Q Consensus 143 ~~~~~~~~A~~~~~~~~~~~p~~-~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~la~~~~~~g~~~~A~~ 221 (470)
+-.|++..|+..+++....+|++ .+....++.+|..+|+++.|+..++. .+|....++..++..+...|++++|++
T Consensus 10 ~~~g~y~~ai~~~~~~~~~~p~~~~e~~~~l~r~yi~~g~~~~al~~~~~---~~~~~~~a~~~la~~~~~~~~~~~A~~ 86 (291)
T 3mkr_A 10 FYIGSYQQCINEAQRVKPSSPERDVERDVFLYRAYLAQRKYGVVLDEIKP---SSAPELQAVRMFAEYLASHSRRDAIVA 86 (291)
T ss_dssp HHTTCHHHHHHHHHHSCCCSHHHHHHHHHHHHHHHHHTTCHHHHHHHSCT---TSCHHHHHHHHHHHHHHCSTTHHHHHH
T ss_pred HHHHHHHHHHHHHHhcccCCchhhHHHHHHHHHHHHHCCCHHHHHHHhcc---cCChhHHHHHHHHHHHcCCCcHHHHHH
Confidence 45788999999999999988887 46888899999999999999998876 356667888999999999999999999
Q ss_pred HHHHHHhh--CCCChHHHHHHHHHHHhhhcccccccccchhhhhHHHhcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHH
Q 012143 222 CFQDLILK--DQNHPAALINYAALLLCKYGSVLAGAGANTGEGACLDQASAVNVAKECLLAALKADPKAAHIWANLANAY 299 (470)
Q Consensus 222 ~~~~~l~~--~p~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~la~~~ 299 (470)
.+++++.. +|+++.+++.+|.++. ..|++++|+..+++ |+++.++..+|.++
T Consensus 87 ~l~~ll~~~~~P~~~~~~~~la~~~~---------------------~~g~~~~Al~~l~~-----~~~~~~~~~l~~~~ 140 (291)
T 3mkr_A 87 ELDREMSRSVDVTNTTFLLMAASIYF---------------------YDQNPDAALRTLHQ-----GDSLECMAMTVQIL 140 (291)
T ss_dssp HHHHHHHSCCCCSCHHHHHHHHHHHH---------------------HTTCHHHHHHHHTT-----CCSHHHHHHHHHHH
T ss_pred HHHHHHhcccCCCCHHHHHHHHHHHH---------------------HCCCHHHHHHHHhC-----CCCHHHHHHHHHHH
Confidence 99999875 6999999999888887 79999999999998 89999999999999
Q ss_pred HHcCChhHHHHHHHHHHhcCCCcccHHHHHHHHHHHHhhhccCchHHhhhhHHHHHHHhhcCCCCCCCcHHHHHHHHHHH
Q 012143 300 YLTGDHRSSGKCLEKAAKLEPNCMSTRYAVAVSRIKDAERSQEPTEQLSWAGNEMASILREGDPVQIEPPIAWAGFAAVQ 379 (470)
Q Consensus 300 ~~~g~~~~A~~~~~~a~~~~p~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~ 379 (470)
..+|++++|+..|+++++.+|++....... .|. .++
T Consensus 141 ~~~g~~~~A~~~l~~~~~~~p~~~~~~l~~-----------------------------------------a~~---~l~ 176 (291)
T 3mkr_A 141 LKLDRLDLARKELKKMQDQDEDATLTQLAT-----------------------------------------AWV---SLA 176 (291)
T ss_dssp HHTTCHHHHHHHHHHHHHHCTTCHHHHHHH-----------------------------------------HHH---HHH
T ss_pred HHCCCHHHHHHHHHHHHhhCcCcHHHHHHH-----------------------------------------HHH---HHH
Confidence 999999999999999999998854221111 122 223
Q ss_pred hccccHHHHHHHHHHHhc--chhhhhHhhHHHHHHHhccHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHcCChHH-HHH
Q 012143 380 KTHHEVAAAFETEENELS--KMEECAGAGESAFLDQASAVNVAKECLLAALKADPKAAHIWANLANAYYLTGDHRS-SGK 456 (470)
Q Consensus 380 ~~~~~~~~A~~~~~~~~~--~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~-A~~ 456 (470)
...|++++|+..|++.+. |....+++.+|.++...|++++|+..|+++++.+|++++++.++|.++...|+..+ +..
T Consensus 177 ~~~~~~~eA~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~eA~~~l~~al~~~p~~~~~l~~l~~~~~~~g~~~eaa~~ 256 (291)
T 3mkr_A 177 AGGEKLQDAYYIFQEMADKCSPTLLLLNGQAACHMAQGRWEAAEGVLQEALDKDSGHPETLINLVVLSQHLGKPPEVTNR 256 (291)
T ss_dssp HCTTHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCCHHHHHH
T ss_pred hCchHHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCCHHHHHH
Confidence 456899999999998655 66667788999999999999999999999999999999999999999999999976 568
Q ss_pred HHHHHHHhhccC
Q 012143 457 CLEKVLMVYCSS 468 (470)
Q Consensus 457 ~~~~al~~~~~~ 468 (470)
++++++++.|..
T Consensus 257 ~~~~~~~~~P~~ 268 (291)
T 3mkr_A 257 YLSQLKDAHRSH 268 (291)
T ss_dssp HHHHHHHHCTTC
T ss_pred HHHHHHHhCCCC
Confidence 999999988764
|
| >3e4b_A ALGK; tetratricopeptide repeat, superhelix, alginate biosynt pseudomonas, protein binding; 2.50A {Pseudomonas fluorescens} | Back alignment and structure |
|---|
Probab=99.95 E-value=5.3e-26 Score=212.49 Aligned_cols=385 Identities=11% Similarity=0.004 Sum_probs=252.2
Q ss_pred hhhhhhhhhhhHHHHHHHHHHHHhcCCCCcchhhhcccchhhhhcCh---hhHHHHHHHHHHhCCCChhHHHHHHHHHHH
Q 012143 11 EGKKINKLGKCRSRISSKMDSALEFGVDADGDQSGLGTSSSSREEKV---SSLKTGLVHVARKMPKNAHAHFLLGLMYQR 87 (470)
Q Consensus 11 ~~~~~~~~g~~~~a~~~~~~~~l~~~p~~~~~~~~~~~~~~~~~~~~---~~A~~~~~~~l~~~p~~~~~~~~l~~~~~~ 87 (470)
-+..+.+.|++.+|+ ..+.++.+. +++.+++.+|.+ +...|+. ++|...|+++++. ++.+++.+|.++..
T Consensus 9 la~~~~~~g~~~~A~-~~~~~aa~~--g~~~A~~~Lg~~-y~~~g~~~d~~~A~~~~~~A~~~---~~~A~~~Lg~~~~~ 81 (452)
T 3e4b_A 9 LANEALKRGDTVTAQ-QNYQQLAEL--GYSEAQVGLADI-QVGTRDPAQIKQAEATYRAAADT---SPRAQARLGRLLAA 81 (452)
T ss_dssp HHHHHHHHHHHHHHH-HHHHHHHHH--TCCTGGGTCC--------------------------------CHHHHHHHHHT
T ss_pred HHHHHHhCCCHHHHH-HHHHHHHHC--CCHHHHHHHHHH-HHccCCCCCHHHHHHHHHHHHhC---CHHHHHHHHHHHHh
Confidence 467788999999999 999999765 678899999999 8889988 9999999999865 78899999997777
Q ss_pred hC-----ChhHHHHHHHHHHHHHhhhhcccchhhhHHHHHHhhhccccccccCCCccccccCcccHHHHHHHHHHhhhcC
Q 012143 88 LG-----QPLKAVSSYEKAEEILLRCEADIARPELLSLVQIHHAQCLLPESSGDNSLDKELEPEELEEILSKLKESMQSD 162 (470)
Q Consensus 88 ~g-----~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~ 162 (470)
.| ++++|+.+|+++++..+. .+++.++.++...+.. ..+ .++...+.++..
T Consensus 82 ~~~~~~~~~~~A~~~~~~Aa~~g~~--------------~A~~~Lg~~y~~~~~~-------~~~-~~a~~~~~~a~~-- 137 (452)
T 3e4b_A 82 KPGATEAEHHEAESLLKKAFANGEG--------------NTLIPLAMLYLQYPHS-------FPN-VNAQQQISQWQA-- 137 (452)
T ss_dssp C--CCHHHHHHHHHHHHHHHHTTCS--------------SCHHHHHHHHHHCGGG-------CTT-CCHHHHHHHHHH--
T ss_pred CCCCCCcCHHHHHHHHHHHHHCCCH--------------HHHHHHHHHHHhCCCC-------CCC-HHHHHHHHHHHH--
Confidence 66 789999999999884321 1223344433322221 011 345666666543
Q ss_pred ccchHHHHHHHHHHHHcCChHHHHHH----HHHHhhcCCCChHHHHHHHHHHHHcC---CHHHHHHHHHHHHhhCCCChH
Q 012143 163 TRQAVVWNTLGLILLKSGRLQSSISV----LSSLLAVDPNNCDCIGNLGIAYFQSG---DMEQSAKCFQDLILKDQNHPA 235 (470)
Q Consensus 163 p~~~~~~~~l~~~~~~~~~~~~A~~~----~~~a~~~~~~~~~~~~~la~~~~~~g---~~~~A~~~~~~~l~~~p~~~~ 235 (470)
+.++.+++.+|.+|...+.++++... ++.+... ++.+++.+|.+|...| ++++|+..|+++....|....
T Consensus 138 ~g~~~a~~~Lg~~y~~~~~~~~~~~~a~~~~~~a~~~---~~~a~~~Lg~~~~~~g~~~~~~~A~~~~~~aa~~g~~~a~ 214 (452)
T 3e4b_A 138 AGYPEAGLAQVLLYRTQGTYDQHLDDVERICKAALNT---TDICYVELATVYQKKQQPEQQAELLKQMEAGVSRGTVTAQ 214 (452)
T ss_dssp HTCTTHHHHHHHHHHHHTCGGGGHHHHHHHHHHHTTT---CTTHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTTCSCHH
T ss_pred CCCHHHHHHHHHHHHcCCCcccCHHHHHHHHHHHHcC---CHHHHHHHHHHHHHcCCcccHHHHHHHHHHHHHCCCHHHH
Confidence 35588999999999999976665555 4444443 4459999999999999 999999999999999999998
Q ss_pred HHHHHHHHHHhhhcccccccccchhhhhHHHhcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHH-H--HHcCChhHHHHHH
Q 012143 236 ALINYAALLLCKYGSVLAGAGANTGEGACLDQASAVNVAKECLLAALKADPKAAHIWANLANA-Y--YLTGDHRSSGKCL 312 (470)
Q Consensus 236 ~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~la~~-~--~~~g~~~~A~~~~ 312 (470)
.++.+|.++.... ...+++++|+.+|+++. |.++.+++++|.+ + ...+++++|+.+|
T Consensus 215 ~~~~Lg~~y~~g~-----------------~~~~d~~~A~~~~~~aa---~g~~~a~~~Lg~~~~~~~~~~d~~~A~~~~ 274 (452)
T 3e4b_A 215 RVDSVARVLGDAT-----------------LGTPDEKTAQALLEKIA---PGYPASWVSLAQLLYDFPELGDVEQMMKYL 274 (452)
T ss_dssp HHHHHHHHHTCGG-----------------GSSCCHHHHHHHHHHHG---GGSTHHHHHHHHHHHHSGGGCCHHHHHHHH
T ss_pred HHHHHHHHHhCCC-----------------CCCCCHHHHHHHHHHHc---CCCHHHHHHHHHHHHhCCCCCCHHHHHHHH
Confidence 8899998886310 12479999999999998 8999999999999 4 5789999999999
Q ss_pred HHHHhcCCCcccHHHHHHHHHHHHhhhccCchHHhhhhHHHHHHHhhcCCCCCCCcHHHHHHHHHHHhc----cccHHHH
Q 012143 313 EKAAKLEPNCMSTRYAVAVSRIKDAERSQEPTEQLSWAGNEMASILREGDPVQIEPPIAWAGFAAVQKT----HHEVAAA 388 (470)
Q Consensus 313 ~~a~~~~p~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~----~~~~~~A 388 (470)
+++.+.. ++.+.+.++....... .. ......+. ..+.... +.++.+++.+|.+|.. ..++++|
T Consensus 275 ~~Aa~~g--~~~A~~~Lg~~y~~G~-g~---~~d~~~A~----~~~~~Aa---~g~~~A~~~Lg~~y~~G~g~~~d~~~A 341 (452)
T 3e4b_A 275 DNGRAAD--QPRAELLLGKLYYEGK-WV---PADAKAAE----AHFEKAV---GREVAADYYLGQIYRRGYLGKVYPQKA 341 (452)
T ss_dssp HHHHHTT--CHHHHHHHHHHHHHCS-SS---CCCHHHHH----HHHHTTT---TTCHHHHHHHHHHHHTTTTSSCCHHHH
T ss_pred HHHHHCC--CHHHHHHHHHHHHcCC-CC---CCCHHHHH----HHHHHHh---CCCHHHHHHHHHHHHCCCCCCcCHHHH
Confidence 9998654 6667777666544211 00 11112222 2222222 4556777777777765 3477777
Q ss_pred HHHHHHHhcchhhhhHhhHHHHHHH----hccHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHH--cCChHHHHHHHHHHH
Q 012143 389 FETEENELSKMEECAGAGESAFLDQ----ASAVNVAKECLLAALKADPKAAHIWANLANAYYL--TGDHRSSGKCLEKVL 462 (470)
Q Consensus 389 ~~~~~~~~~~~~~~~~~~l~~~~~~----~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~--~g~~~~A~~~~~~al 462 (470)
+..|+++.......+.+.+|.+|.. ..++.+|..+|+++.+.. ++.+...++.+... .++..+|....++..
T Consensus 342 ~~~~~~Aa~~g~~~A~~~Lg~~y~~G~g~~~d~~~A~~~~~~A~~~g--~~~a~~~l~~l~~~~~~~~~~~a~~~~~~~~ 419 (452)
T 3e4b_A 342 LDHLLTAARNGQNSADFAIAQLFSQGKGTKPDPLNAYVFSQLAKAQD--TPEANDLATQLEAPLTPAQRAEGQRLVQQEL 419 (452)
T ss_dssp HHHHHHHHTTTCTTHHHHHHHHHHSCTTBCCCHHHHHHHHHHHHTTC--CHHHHHHHHHHHTTCCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHhhChHHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHHCC--CHHHHHHHHHHHHhCCHHHHHHHHHHHHHHH
Confidence 7777777777777777777777764 346777777777777654 34555556655433 234555666555544
Q ss_pred Hh
Q 012143 463 MV 464 (470)
Q Consensus 463 ~~ 464 (470)
+.
T Consensus 420 ~~ 421 (452)
T 3e4b_A 420 AA 421 (452)
T ss_dssp HH
T ss_pred Hh
Confidence 43
|
| >4a1s_A PINS, partner of inscuteable; cell cycle, LGN, mitotic spindle orientation, asymmetric CEL divisions; 2.10A {Drosophila melanogaster} | Back alignment and structure |
|---|
Probab=99.94 E-value=3.2e-26 Score=212.76 Aligned_cols=280 Identities=17% Similarity=0.123 Sum_probs=223.9
Q ss_pred ChhHHHHHHHHHHHhCChhHHHHHHHHHHHHHhhhhcccchhhhHHHHHHhhhccccccccCCCccccccCcccHHHHHH
Q 012143 74 NAHAHFLLGLMYQRLGQPLKAVSSYEKAEEILLRCEADIARPELLSLVQIHHAQCLLPESSGDNSLDKELEPEELEEILS 153 (470)
Q Consensus 74 ~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~ 153 (470)
....++.+|..+...|++++|+..|+++++..|.+.
T Consensus 47 ~~~~l~~~g~~~~~~g~~~~A~~~~~~al~~~~~~~-------------------------------------------- 82 (411)
T 4a1s_A 47 MCLELALEGERLCNAGDCRAGVAFFQAAIQAGTEDL-------------------------------------------- 82 (411)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCSCH--------------------------------------------
T ss_pred HHHHHHHHHHHHHHhCcHHHHHHHHHHHHHhcccCh--------------------------------------------
Confidence 345566777777777777777777777776532210
Q ss_pred HHHHhhhcCccchHHHHHHHHHHHHcCChHHHHHHHHHHhhc------CCCChHHHHHHHHHHHHcCCHHHHHHHHHHHH
Q 012143 154 KLKESMQSDTRQAVVWNTLGLILLKSGRLQSSISVLSSLLAV------DPNNCDCIGNLGIAYFQSGDMEQSAKCFQDLI 227 (470)
Q Consensus 154 ~~~~~~~~~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~------~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~l 227 (470)
+....++..+|.++...|++++|+.+|+++++. .|....++..+|.++...|++++|+..+++++
T Consensus 83 ---------~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al 153 (411)
T 4a1s_A 83 ---------RTLSAIYSQLGNAYFYLGDYNKAMQYHKHDLTLAKSMNDRLGEAKSSGNLGNTLKVMGRFDEAAICCERHL 153 (411)
T ss_dssp ---------HHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred ---------hHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHccCchHHHHHHHHHHHHHHHCCCHHHHHHHHHHHH
Confidence 001257788999999999999999999999887 46667889999999999999999999999998
Q ss_pred hh------CCCChHHHHHHHHHHHhhhcccccccccchhhhhHHHhcCC-----------------HHHHHHHHHHHHhc
Q 012143 228 LK------DQNHPAALINYAALLLCKYGSVLAGAGANTGEGACLDQASA-----------------VNVAKECLLAALKA 284 (470)
Q Consensus 228 ~~------~p~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----------------~~~A~~~~~~~~~~ 284 (470)
.. .|....++..+|.++. ..|+ +++|+.++++++++
T Consensus 154 ~~~~~~~~~~~~~~~~~~l~~~~~---------------------~~g~~~~~~~~~~~~~~a~~~~~~A~~~~~~al~~ 212 (411)
T 4a1s_A 154 TLARQLGDRLSEGRALYNLGNVYH---------------------AKGKHLGQRNPGKFGDDVKEALTRAVEFYQENLKL 212 (411)
T ss_dssp HHHHHHTCHHHHHHHHHHHHHHHH---------------------HHHHHHHHHSTTCCCHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHhhchHHHHHHHHHHHHHHH---------------------HcCcccccccchhhhhhhhHHHHHHHHHHHHHHHH
Confidence 87 3344445555555555 6888 99999999999876
Q ss_pred C------CCCHHHHHHHHHHHHHcCChhHHHHHHHHHHhcCCCcccHHHHHHHHHHHHhhhccCchHHhhhhHHHHHHHh
Q 012143 285 D------PKAAHIWANLANAYYLTGDHRSSGKCLEKAAKLEPNCMSTRYAVAVSRIKDAERSQEPTEQLSWAGNEMASIL 358 (470)
Q Consensus 285 ~------p~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~p~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 358 (470)
. +....++..+|.++...|++++|+.++++++.+.|.......
T Consensus 213 ~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~------------------------------- 261 (411)
T 4a1s_A 213 MRDLGDRGAQGRACGNLGNTYYLLGDFQAAIEHHQERLRIAREFGDRAA------------------------------- 261 (411)
T ss_dssp HHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHH-------------------------------
T ss_pred HHHcCCHHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHhcCCcHH-------------------------------
Confidence 4 334568999999999999999999999999988766332111
Q ss_pred hcCCCCCCCcHHHHHHHHHHHhccccHHHHHHHHHHHhcchh--------hhhHhhHHHHHHHhccHHHHHHHHHHHHhc
Q 012143 359 REGDPVQIEPPIAWAGFAAVQKTHHEVAAAFETEENELSKME--------ECAGAGESAFLDQASAVNVAKECLLAALKA 430 (470)
Q Consensus 359 ~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~--------~~~~~~l~~~~~~~~~~~~A~~~~~~al~~ 430 (470)
...++..+|.++...|++++|+..+.+.+...+ ...+..+|.++...|++++|+.+++++++.
T Consensus 262 ---------~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~ 332 (411)
T 4a1s_A 262 ---------ERRANSNLGNSHIFLGQFEDAAEHYKRTLALAVELGEREVEAQSCYSLGNTYTLLHEFNTAIEYHNRHLAI 332 (411)
T ss_dssp ---------HHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred ---------HHHHHHHHHHHHHHCcCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence 124788999999999999999999998666333 467889999999999999999999999987
Q ss_pred CCCc------HHHHHHHHHHHHHcCChHHHHHHHHHHHHhhcc
Q 012143 431 DPKA------AHIWANLANAYYLTGDHRSSGKCLEKVLMVYCS 467 (470)
Q Consensus 431 ~p~~------~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~ 467 (470)
.+.. ..++..+|.+|...|++++|..+|++++++.++
T Consensus 333 ~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~ 375 (411)
T 4a1s_A 333 AQELGDRIGEARACWSLGNAHSAIGGHERALKYAEQHLQLAXX 375 (411)
T ss_dssp HHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCH
T ss_pred HHHCCChHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHhh
Confidence 5543 568999999999999999999999999998754
|
| >1ouv_A Conserved hypothetical secreted protein; TPR repeat, HCP repeat, cysteine rich protein, loop-helix-TU repeat protein, hydrolase; 2.00A {Helicobacter pylori} SCOP: a.118.18.1 | Back alignment and structure |
|---|
Probab=99.94 E-value=1.5e-24 Score=189.51 Aligned_cols=229 Identities=13% Similarity=0.087 Sum_probs=207.5
Q ss_pred CccchHHHHHHHHHHHHcCChHHHHHHHHHHhhcCCCChHHHHHHHHHHHH----cCCHHHHHHHHHHHHhhCCCChHHH
Q 012143 162 DTRQAVVWNTLGLILLKSGRLQSSISVLSSLLAVDPNNCDCIGNLGIAYFQ----SGDMEQSAKCFQDLILKDQNHPAAL 237 (470)
Q Consensus 162 ~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~la~~~~~----~g~~~~A~~~~~~~l~~~p~~~~~~ 237 (470)
+|.++.+++.+|.++...|++++|+.+|+++++ |+++.+++.+|.++.. .+++++|+..|+++++.+ ++.++
T Consensus 2 ~~~~~~a~~~lg~~~~~~~~~~~A~~~~~~a~~--~~~~~a~~~lg~~~~~g~~~~~~~~~A~~~~~~a~~~~--~~~a~ 77 (273)
T 1ouv_A 2 AEQDPKELVGLGAKSYKEKDFTQAKKYFEKACD--LKENSGCFNLGVLYYQGQGVEKNLKKAASFYAKACDLN--YSNGC 77 (273)
T ss_dssp ---CHHHHHHHHHHHHHTTCHHHHHHHHHHHHH--TTCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT--CHHHH
T ss_pred CCCChHHHHHHHHHHHhCCCHHHHHHHHHHHHH--CCCHHHHHHHHHHHHcCCCcCCCHHHHHHHHHHHHHCC--CHHHH
Confidence 578899999999999999999999999999998 7889999999999999 999999999999999875 78888
Q ss_pred HHHHHHHHhhhcccccccccchhhhhHHHh----cCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHH----cCChhHHH
Q 012143 238 INYAALLLCKYGSVLAGAGANTGEGACLDQ----ASAVNVAKECLLAALKADPKAAHIWANLANAYYL----TGDHRSSG 309 (470)
Q Consensus 238 ~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~A~~~~~~~~~~~p~~~~~~~~la~~~~~----~g~~~~A~ 309 (470)
..+|.++. . .+++++|+.+|+++++.+ ++.++..+|.+|.. .+++++|+
T Consensus 78 ~~lg~~~~---------------------~g~~~~~~~~~A~~~~~~a~~~~--~~~a~~~lg~~~~~~~~~~~~~~~A~ 134 (273)
T 1ouv_A 78 HLLGNLYY---------------------SGQGVSQNTNKALQYYSKACDLK--YAEGCASLGGIYHDGKVVTRDFKKAV 134 (273)
T ss_dssp HHHHHHHH---------------------HTSSSCCCHHHHHHHHHHHHHTT--CHHHHHHHHHHHHHCSSSCCCHHHHH
T ss_pred HHHHHHHh---------------------CCCCcccCHHHHHHHHHHHHHcC--CccHHHHHHHHHHcCCCcccCHHHHH
Confidence 88888887 5 899999999999999874 79999999999999 99999999
Q ss_pred HHHHHHHhcCCCcccHHHHHHHHHHHHhhhccCchHHhhhhHHHHHHHhhcCCCCCCCcHHHHHHHHHHHhc----cccH
Q 012143 310 KCLEKAAKLEPNCMSTRYAVAVSRIKDAERSQEPTEQLSWAGNEMASILREGDPVQIEPPIAWAGFAAVQKT----HHEV 385 (470)
Q Consensus 310 ~~~~~a~~~~p~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~----~~~~ 385 (470)
.+|+++++..+. .++..+|.++.. .+++
T Consensus 135 ~~~~~a~~~~~~------------------------------------------------~a~~~lg~~~~~~~~~~~~~ 166 (273)
T 1ouv_A 135 EYFTKACDLNDG------------------------------------------------DGCTILGSLYDAGRGTPKDL 166 (273)
T ss_dssp HHHHHHHHTTCH------------------------------------------------HHHHHHHHHHHHTSSSCCCH
T ss_pred HHHHHHHhcCcH------------------------------------------------HHHHHHHHHHHcCCCCCCCH
Confidence 999999986522 356677777877 8999
Q ss_pred HHHHHHHHHHhcchhhhhHhhHHHHHHH----hccHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHH----cCChHHHHHH
Q 012143 386 AAAFETEENELSKMEECAGAGESAFLDQ----ASAVNVAKECLLAALKADPKAAHIWANLANAYYL----TGDHRSSGKC 457 (470)
Q Consensus 386 ~~A~~~~~~~~~~~~~~~~~~l~~~~~~----~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~----~g~~~~A~~~ 457 (470)
++|+..+++.+...+..+++.+|.++.. .+++++|+.+|+++++..| +.+++.+|.+|.. .+++++|+.+
T Consensus 167 ~~A~~~~~~a~~~~~~~a~~~lg~~~~~g~~~~~~~~~A~~~~~~a~~~~~--~~a~~~l~~~~~~g~~~~~~~~~A~~~ 244 (273)
T 1ouv_A 167 KKALASYDKACDLKDSPGCFNAGNMYHHGEGATKNFKEALARYSKACELEN--GGGCFNLGAMQYNGEGVTRNEKQAIEN 244 (273)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHTCSSCCCHHHHHHHHHHHHHTTC--HHHHHHHHHHHHTTSSSSCCSTTHHHH
T ss_pred HHHHHHHHHHHHCCCHHHHHHHHHHHHcCCCCCccHHHHHHHHHHHHhCCC--HHHHHHHHHHHHcCCCcccCHHHHHHH
Confidence 9999999998888888899999999999 9999999999999999866 8899999999999 9999999999
Q ss_pred HHHHHHhhcc
Q 012143 458 LEKVLMVYCS 467 (470)
Q Consensus 458 ~~~al~~~~~ 467 (470)
|++++++-+.
T Consensus 245 ~~~a~~~~~~ 254 (273)
T 1ouv_A 245 FKKGCKLGAK 254 (273)
T ss_dssp HHHHHHHTCH
T ss_pred HHHHHHcCCH
Confidence 9999998764
|
| >3sf4_A G-protein-signaling modulator 2; tetratricopeptide repeat, TPR, cell polarity, asymmetric CEL division, mitotic spindle orientation; 2.60A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.94 E-value=3.2e-26 Score=212.34 Aligned_cols=274 Identities=18% Similarity=0.195 Sum_probs=229.5
Q ss_pred hhhhhhhhhhhhhHHHHHHHHHHHHhcCCCCc----chhhhcccchhhhhcChhhHHHHHHHHHHh------CCCChhHH
Q 012143 9 EVEGKKINKLGKCRSRISSKMDSALEFGVDAD----GDQSGLGTSSSSREEKVSSLKTGLVHVARK------MPKNAHAH 78 (470)
Q Consensus 9 ~~~~~~~~~~g~~~~a~~~~~~~~l~~~p~~~----~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~------~p~~~~~~ 78 (470)
-..|..+...|++.+|+ ..++++++..|++. ..+..+|.+ +...|++++|...+++++.. .|..+.++
T Consensus 13 ~~~g~~~~~~g~~~~A~-~~~~~al~~~~~~~~~~~~~~~~l~~~-~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~ 90 (406)
T 3sf4_A 13 ALEGERLCKSGDCRAGV-SFFEAAVQVGTEDLKTLSAIYSQLGNA-YFYLHDYAKALEYHHHDLTLARTIGDQLGEAKAS 90 (406)
T ss_dssp HHHHHHHHHTTCHHHHH-HHHHHHHHHCCSCHHHHHHHHHHHHHH-HHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred HHHHHHHHHhccHHHHH-HHHHHHHhcCcccHHHHHHHHHHHHHH-HHHhcCHHHHHHHHHHHHHHHHhccccHHHHHHH
Confidence 34688899999999999 99999999999874 578899999 99999999999999999876 34557799
Q ss_pred HHHHHHHHHhCChhHHHHHHHHHHHHHhhhhcccchhhhHHHHHHhhhccccccccCCCccccccCccc-----------
Q 012143 79 FLLGLMYQRLGQPLKAVSSYEKAEEILLRCEADIARPELLSLVQIHHAQCLLPESSGDNSLDKELEPEE----------- 147 (470)
Q Consensus 79 ~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----------- 147 (470)
..+|.++...|++++|+.+++++++..|.... ......++..++.++ ...|+
T Consensus 91 ~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~------~~~~~~~~~~l~~~~-----------~~~g~~~~~~~~~~~~ 153 (406)
T 3sf4_A 91 GNLGNTLKVLGNFDEAIVCCQRHLDISRELND------KVGEARALYNLGNVY-----------HAKGKSFGCPGPQDVG 153 (406)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTC------HHHHHHHHHHHHHHH-----------HHHHHTCC-------C
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHHHHhccc------ccchHHHHHHHHHHH-----------HHcCCcccccccchhh
Confidence 99999999999999999999999999876432 222344555555554 45566
Q ss_pred ---------HHHHHHHHHHhhhc------CccchHHHHHHHHHHHHcCChHHHHHHHHHHhhcCCCChH------HHHHH
Q 012143 148 ---------LEEILSKLKESMQS------DTRQAVVWNTLGLILLKSGRLQSSISVLSSLLAVDPNNCD------CIGNL 206 (470)
Q Consensus 148 ---------~~~A~~~~~~~~~~------~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~------~~~~l 206 (470)
+++|+..+++++.. .|....++..+|.++...|++++|+.++++++++.|.... ++..+
T Consensus 154 ~~~~~a~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l 233 (406)
T 3sf4_A 154 EFPEEVRDALQAAVDFYEENLSLVTALGDRAAQGRAFGNLGNTHYLLGNFRDAVIAHEQRLLIAKEFGDKAAERRAYSNL 233 (406)
T ss_dssp CCCHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTBHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred hhhhhHHHHHHHHHHHHHHHHHHHHhccCcHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHhcCCcHHHHHHHHHH
Confidence 89999999999876 4455678999999999999999999999999998665544 89999
Q ss_pred HHHHHHcCCHHHHHHHHHHHHhhCCCC------hHHHHHHHHHHHhhhcccccccccchhhhhHHHhcCCHHHHHHHHHH
Q 012143 207 GIAYFQSGDMEQSAKCFQDLILKDQNH------PAALINYAALLLCKYGSVLAGAGANTGEGACLDQASAVNVAKECLLA 280 (470)
Q Consensus 207 a~~~~~~g~~~~A~~~~~~~l~~~p~~------~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~ 280 (470)
|.++...|++++|+..+++++.+.|.. ..++..+ |.++...|++++|+.++++
T Consensus 234 a~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l---------------------a~~~~~~g~~~~A~~~~~~ 292 (406)
T 3sf4_A 234 GNAYIFLGEFETASEYYKKTLLLARQLKDRAVEAQSCYSL---------------------GNTYTLLQDYEKAIDYHLK 292 (406)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHH---------------------HHHHHHTTCHHHHHHHHHH
T ss_pred HHHHHHcCChHHHHHHHHHHHHHHHhCcCchHHHHHHHHH---------------------HHHHHHhCcHHHHHHHHHH
Confidence 999999999999999999999887655 3334444 4555589999999999999
Q ss_pred HHhcCCCC------HHHHHHHHHHHHHcCChhHHHHHHHHHHhcCCCc
Q 012143 281 ALKADPKA------AHIWANLANAYYLTGDHRSSGKCLEKAAKLEPNC 322 (470)
Q Consensus 281 ~~~~~p~~------~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~p~~ 322 (470)
++.+.+.. ..++..+|.++...|++++|+.++++++++.+..
T Consensus 293 a~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~ 340 (406)
T 3sf4_A 293 HLAIAQELNDRIGEGRACWSLGNAYTALGNHDQAMHFAEKHLEISREV 340 (406)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHhcCCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHh
Confidence 99885543 6789999999999999999999999999876553
|
| >4abn_A Tetratricopeptide repeat protein 5; P53 cofactor, stress-response, DNA repair, gene regulation; 2.05A {Mus musculus} | Back alignment and structure |
|---|
Probab=99.94 E-value=1.7e-25 Score=210.44 Aligned_cols=224 Identities=18% Similarity=0.179 Sum_probs=196.6
Q ss_pred ccHHHHHHHHHHhhhcCccchHHHHHHHHHHHHcCCh-HHHHHHHHHHhhcCCCChHHHHHHHHHHHHcCCHHHHHHHHH
Q 012143 146 EELEEILSKLKESMQSDTRQAVVWNTLGLILLKSGRL-QSSISVLSSLLAVDPNNCDCIGNLGIAYFQSGDMEQSAKCFQ 224 (470)
Q Consensus 146 ~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~~~~-~~A~~~~~~a~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~ 224 (470)
+.+++++..+++.....|.++.+++.+|.++...|++ ++|+.+|+++++.+|+++.++..+|.+|...|++++|+..|+
T Consensus 82 ~~~~~al~~l~~~~~~~~~~a~~~~~lg~~~~~~g~~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~g~~~~A~~~~~ 161 (474)
T 4abn_A 82 EEMEKTLQQMEEVLGSAQVEAQALMLKGKALNVTPDYSPEAEVLLSKAVKLEPELVEAWNQLGEVYWKKGDVTSAHTCFS 161 (474)
T ss_dssp HHHHHHHHHHHHHHTTCCCCHHHHHHHHHHHTSSSSCCHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhccCchhHHHHHHHHHHHHhccccHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHH
Confidence 3468888999999999999999999999999999999 999999999999999999999999999999999999999999
Q ss_pred HHHhhCCCChHHHHHHHHHHHhhhcccccccccchhhhhHHHhcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHc--
Q 012143 225 DLILKDQNHPAALINYAALLLCKYGSVLAGAGANTGEGACLDQASAVNVAKECLLAALKADPKAAHIWANLANAYYLT-- 302 (470)
Q Consensus 225 ~~l~~~p~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~la~~~~~~-- 302 (470)
++++++|+ ..++..+|.++... ..+......|++++|+..|+++++++|+++.+|..+|.++...
T Consensus 162 ~al~~~p~-~~~~~~lg~~~~~~------------~~~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~~~ 228 (474)
T 4abn_A 162 GALTHCKN-KVSLQNLSMVLRQL------------QTDSGDEHSRHVMDSVRQAKLAVQMDVLDGRSWYILGNAYLSLYF 228 (474)
T ss_dssp HHHTTCCC-HHHHHHHHHHHTTC------------CCSCHHHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHH
T ss_pred HHHhhCCC-HHHHHHHHHHHHHh------------ccCChhhhhhhHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHH
Confidence 99999999 68888888888721 0011222239999999999999999999999999999999999
Q ss_pred ------CChhHHHHHHHHHHhcCC---CcccHHHHHHHHHHHHhhhccCchHHhhhhHHHHHHHhhcCCCCCCCcHHHHH
Q 012143 303 ------GDHRSSGKCLEKAAKLEP---NCMSTRYAVAVSRIKDAERSQEPTEQLSWAGNEMASILREGDPVQIEPPIAWA 373 (470)
Q Consensus 303 ------g~~~~A~~~~~~a~~~~p---~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 373 (470)
|++++|+.+|+++++++| +++.
T Consensus 229 ~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~------------------------------------------------- 259 (474)
T 4abn_A 229 NTGQNPKISQQALSAYAQAEKVDRKASSNPD------------------------------------------------- 259 (474)
T ss_dssp HTTCCHHHHHHHHHHHHHHHHHCGGGGGCHH-------------------------------------------------
T ss_pred hhccccchHHHHHHHHHHHHHhCCCcccCHH-------------------------------------------------
Confidence 999999999999999988 4432
Q ss_pred HHHHHHhccccHHHHHHHHHHHhcchhhhhHhhHHHHHHHhccHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHcCChHH
Q 012143 374 GFAAVQKTHHEVAAAFETEENELSKMEECAGAGESAFLDQASAVNVAKECLLAALKADPKAAHIWANLANAYYLTGDHRS 453 (470)
Q Consensus 374 ~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~ 453 (470)
+++.+|.++...|++++|+..|+++++++|+++.++..++.++..+|++++
T Consensus 260 -----------------------------~~~~lg~~~~~~g~~~~A~~~~~~al~l~p~~~~a~~~l~~~~~~lg~~~e 310 (474)
T 4abn_A 260 -----------------------------LHLNRATLHKYEESYGEALEGFSQAAALDPAWPEPQQREQQLLEFLSRLTS 310 (474)
T ss_dssp -----------------------------HHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHHHHH
T ss_pred -----------------------------HHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHH
Confidence 233444577778888999999999999999999999999999999999999
Q ss_pred HHHHHHH
Q 012143 454 SGKCLEK 460 (470)
Q Consensus 454 A~~~~~~ 460 (470)
|+..+.+
T Consensus 311 Ai~~~~~ 317 (474)
T 4abn_A 311 LLESKGK 317 (474)
T ss_dssp HHHHTTT
T ss_pred HHHHhcc
Confidence 9986644
|
| >3ro2_A PINS homolog, G-protein-signaling modulator 2; TPR repeat, protein-protein interaction, protein-binding, PR binding; 2.30A {Mus musculus} | Back alignment and structure |
|---|
Probab=99.94 E-value=8.5e-26 Score=203.73 Aligned_cols=282 Identities=16% Similarity=0.115 Sum_probs=210.3
Q ss_pred hhhhcccchhhhhcChhhHHHHHHHHHHhCCCCh----hHHHHHHHHHHHhCChhHHHHHHHHHHHHHhhhhcccchhhh
Q 012143 42 DQSGLGTSSSSREEKVSSLKTGLVHVARKMPKNA----HAHFLLGLMYQRLGQPLKAVSSYEKAEEILLRCEADIARPEL 117 (470)
Q Consensus 42 ~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~p~~~----~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~ 117 (470)
.++..|.. +...|++++|+..|+++++..|+++ .++..+|.++...|++++|+..+++++...+..
T Consensus 7 ~l~~~g~~-~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~--------- 76 (338)
T 3ro2_A 7 ELALEGER-LCKSGDCRAGVSFFEAAVQVGTEDLKTLSAIYSQLGNAYFYLHDYAKALEYHHHDLTLARTI--------- 76 (338)
T ss_dssp HHHHHHHH-HHHTTCHHHHHHHHHHHHHHCCSCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHH---------
T ss_pred HHHHHHHH-HHHhccHHHHHHHHHHHHhhCcccHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhcc---------
Confidence 45677888 8889999999999999999988884 678889999999999999999999988763221
Q ss_pred HHHHHHhhhccccccccCCCccccccCcccHHHHHHHHHHhhhcCccchHHHHHHHHHHHHcCChHHHHHHHHHHhhcCC
Q 012143 118 LSLVQIHHAQCLLPESSGDNSLDKELEPEELEEILSKLKESMQSDTRQAVVWNTLGLILLKSGRLQSSISVLSSLLAVDP 197 (470)
Q Consensus 118 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~ 197 (470)
...|..+.++..+|.++...|++++|+..++++++..|
T Consensus 77 ------------------------------------------~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~ 114 (338)
T 3ro2_A 77 ------------------------------------------GDQLGEAKASGNLGNTLKVLGNFDEAIVCCQRHLDISR 114 (338)
T ss_dssp ------------------------------------------TCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHH
T ss_pred ------------------------------------------cccHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHH
Confidence 11234467888999999999999999999999998765
Q ss_pred CC------hHHHHHHHHHHHHcCC--------------------HHHHHHHHHHHHhhCCC------ChHHHHHHHHHHH
Q 012143 198 NN------CDCIGNLGIAYFQSGD--------------------MEQSAKCFQDLILKDQN------HPAALINYAALLL 245 (470)
Q Consensus 198 ~~------~~~~~~la~~~~~~g~--------------------~~~A~~~~~~~l~~~p~------~~~~~~~l~~~~~ 245 (470)
.. ..++..+|.++...|+ +++|+..+++++...+. ...++..+
T Consensus 115 ~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~l----- 189 (338)
T 3ro2_A 115 ELNDKVGEARALYNLGNVYHAKGKSFGCPGPQDTGEFPEDVRNALQAAVDLYEENLSLVTALGDRAAQGRAFGNL----- 189 (338)
T ss_dssp HTTCHHHHHHHHHHHHHHHHHHHHTSSSSSCC----CCHHHHHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHH-----
T ss_pred HhcCchHHHHHHHHHHHHHHHcCcccccchhhhhhhhhhhHHHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHH-----
Confidence 44 3389999999999999 99999999988865321 12233333
Q ss_pred hhhcccccccccchhhhhHHHhcCCHHHHHHHHHHHHhcCCCC------HHHHHHHHHHHHHcCChhHHHHHHHHHHhcC
Q 012143 246 CKYGSVLAGAGANTGEGACLDQASAVNVAKECLLAALKADPKA------AHIWANLANAYYLTGDHRSSGKCLEKAAKLE 319 (470)
Q Consensus 246 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~p~~------~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~ 319 (470)
|.++...|++++|+.+++++++..|.. ..++..+|.++...|++++|+.++++++...
T Consensus 190 ----------------~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~ 253 (338)
T 3ro2_A 190 ----------------GNTHYLLGNFRDAVIAHEQRLLIAKEFGDKAAERRAYSNLGNAYIFLGEFETASEYYKKTLLLA 253 (338)
T ss_dssp ----------------HHHHHHHTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHH
T ss_pred ----------------HHHHHHhCCHHHHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHH
Confidence 444457888899998888888775442 3378888888888888888888888888765
Q ss_pred CCcccHHHHHHHHHHHHhhhccCchHHhhhhHHHHHHHhhcCCCCCCCcHHHHHHHHHHHhccccHHHHHHHHHHHhcch
Q 012143 320 PNCMSTRYAVAVSRIKDAERSQEPTEQLSWAGNEMASILREGDPVQIEPPIAWAGFAAVQKTHHEVAAAFETEENELSKM 399 (470)
Q Consensus 320 p~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~ 399 (470)
|.......
T Consensus 254 ~~~~~~~~------------------------------------------------------------------------ 261 (338)
T 3ro2_A 254 RQLKDRAV------------------------------------------------------------------------ 261 (338)
T ss_dssp HHTTCHHH------------------------------------------------------------------------
T ss_pred HhhcchhH------------------------------------------------------------------------
Confidence 54321110
Q ss_pred hhhhHhhHHHHHHHhccHHHHHHHHHHHHhcCCCc------HHHHHHHHHHHHHcCChHHHHHHHHHHHHhhccC
Q 012143 400 EECAGAGESAFLDQASAVNVAKECLLAALKADPKA------AHIWANLANAYYLTGDHRSSGKCLEKVLMVYCSS 468 (470)
Q Consensus 400 ~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~p~~------~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~ 468 (470)
....+..+|.++...|++++|+.+++++++..|.. ..++..+|.++...|++++|..+|++++++.++.
T Consensus 262 ~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~ 336 (338)
T 3ro2_A 262 EAQSCYSLGNTYTLLQDYEKAIDYHLKHLAIAQELKDRIGEGRACWSLGNAYTALGNHDQAMHFAEKHLEISREV 336 (338)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHC----
T ss_pred HHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHhh
Confidence 01234445556667777777777777777664432 5588899999999999999999999999887654
|
| >2q7f_A YRRB protein; TPR, protein binding; 2.49A {Bacillus subtilis} SCOP: k.38.1.1 | Back alignment and structure |
|---|
Probab=99.94 E-value=5e-25 Score=189.06 Aligned_cols=213 Identities=15% Similarity=0.166 Sum_probs=172.9
Q ss_pred CcchhhhcccchhhhhcChhhHHHHHHHHHHhCCCChhHHHHHHHHHHHhCChhHHHHHHHHHHHHHhhhhcccchhhhH
Q 012143 39 ADGDQSGLGTSSSSREEKVSSLKTGLVHVARKMPKNAHAHFLLGLMYQRLGQPLKAVSSYEKAEEILLRCEADIARPELL 118 (470)
Q Consensus 39 ~~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~ 118 (470)
.+..++.+|.. +...|++++|...|+++++.+|.++.++..+|.++...|++++|+..|+++++.
T Consensus 22 ~~~~~~~~a~~-~~~~~~~~~A~~~~~~~l~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~-------------- 86 (243)
T 2q7f_A 22 ASMTGGQQMGR-GSEFGDYEKAAEAFTKAIEENKEDAIPYINFANLLSSVNELERALAFYDKALEL-------------- 86 (243)
T ss_dssp ---------------------CCTTHHHHHTTCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--------------
T ss_pred HHHHHHHHHHH-HHHhhCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHc--------------
Confidence 45578888998 999999999999999999999999999999999999999988888888887764
Q ss_pred HHHHHhhhccccccccCCCccccccCcccHHHHHHHHHHhhhcCccchHHHHHHHHHHHHcCChHHHHHHHHHHhhcCCC
Q 012143 119 SLVQIHHAQCLLPESSGDNSLDKELEPEELEEILSKLKESMQSDTRQAVVWNTLGLILLKSGRLQSSISVLSSLLAVDPN 198 (470)
Q Consensus 119 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~ 198 (470)
+|.++.++..+|.++...|++++|+..++++++..|.
T Consensus 87 -------------------------------------------~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~ 123 (243)
T 2q7f_A 87 -------------------------------------------DSSAATAYYGAGNVYVVKEMYKEAKDMFEKALRAGME 123 (243)
T ss_dssp -------------------------------------------CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTCC
T ss_pred -------------------------------------------CCcchHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCC
Confidence 4556778888999999999999999999999999999
Q ss_pred ChHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCChHHHHHHHHHHHhhhcccccccccchhhhhHHHhcCCHHHHHHHH
Q 012143 199 NCDCIGNLGIAYFQSGDMEQSAKCFQDLILKDQNHPAALINYAALLLCKYGSVLAGAGANTGEGACLDQASAVNVAKECL 278 (470)
Q Consensus 199 ~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~ 278 (470)
++.++..+|.++...|++++|+..+++++...|.++..+..++.++. ..|++++|+..+
T Consensus 124 ~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~---------------------~~~~~~~A~~~~ 182 (243)
T 2q7f_A 124 NGDLFYMLGTVLVKLEQPKLALPYLQRAVELNENDTEARFQFGMCLA---------------------NEGMLDEALSQF 182 (243)
T ss_dssp SHHHHHHHHHHHHHTSCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHH---------------------HHTCCHHHHHHH
T ss_pred CHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCccHHHHHHHHHHHH---------------------HcCCHHHHHHHH
Confidence 99999999999999999999999999999999999888888887777 689999999999
Q ss_pred HHHHhcCCCCHHHHHHHHHHHHHcCChhHHHHHHHHHHhcCCCcccHHHHHH
Q 012143 279 LAALKADPKAAHIWANLANAYYLTGDHRSSGKCLEKAAKLEPNCMSTRYAVA 330 (470)
Q Consensus 279 ~~~~~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~p~~~~~~~~l~ 330 (470)
++++...|+++.++..+|.++...|++++|+.+|+++++.+|++..++..++
T Consensus 183 ~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~~~ 234 (243)
T 2q7f_A 183 AAVTEQDPGHADAFYNAGVTYAYKENREKALEMLDKAIDIQPDHMLALHAKK 234 (243)
T ss_dssp HHHHHHCTTCHHHHHHHHHHHHHTTCTTHHHHHHHHHHHHCTTCHHHHHHHT
T ss_pred HHHHHhCcccHHHHHHHHHHHHHccCHHHHHHHHHHHHccCcchHHHHHHHH
Confidence 9999999999999999999999999999999999999999999887776554
|
| >3vtx_A MAMA; tetratricopeptide repeats (TPR) containing protein, peptide protein, protein binding; 1.75A {Candidatus magnetobacterium bavaricum} PDB: 3vty_A | Back alignment and structure |
|---|
Probab=99.94 E-value=9.1e-25 Score=178.78 Aligned_cols=173 Identities=17% Similarity=0.169 Sum_probs=157.2
Q ss_pred CChhHHHHHHHHHHHhCChhHHHHHHHHHHHHHhhhhcccchhhhHHHHHHhhhccccccccCCCccccccCcccHHHHH
Q 012143 73 KNAHAHFLLGLMYQRLGQPLKAVSSYEKAEEILLRCEADIARPELLSLVQIHHAQCLLPESSGDNSLDKELEPEELEEIL 152 (470)
Q Consensus 73 ~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~ 152 (470)
+++.+|+.+|.+|...|++++|+..|++++++
T Consensus 3 e~~~iy~~lG~~~~~~g~~~~A~~~~~~al~~------------------------------------------------ 34 (184)
T 3vtx_A 3 ETTTIYMDIGDKKRTKGDFDGAIRAYKKVLKA------------------------------------------------ 34 (184)
T ss_dssp -CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH------------------------------------------------
T ss_pred cHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh------------------------------------------------
Confidence 45677777888888777777777777777664
Q ss_pred HHHHHhhhcCccchHHHHHHHHHHHHcCChHHHHHHHHHHhhcCCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCC
Q 012143 153 SKLKESMQSDTRQAVVWNTLGLILLKSGRLQSSISVLSSLLAVDPNNCDCIGNLGIAYFQSGDMEQSAKCFQDLILKDQN 232 (470)
Q Consensus 153 ~~~~~~~~~~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~ 232 (470)
+|+++.++..+|.++...|++++|+..+.+++...|+++.++..+|.++...++++.|+..+.+++..+|.
T Consensus 35 ---------~p~~~~~~~~la~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~a~~~~~~ 105 (184)
T 3vtx_A 35 ---------DPNNVETLLKLGKTYMDIGLPNDAIESLKKFVVLDTTSAEAYYILGSANFMIDEKQAAIDALQRAIALNTV 105 (184)
T ss_dssp ---------CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT
T ss_pred ---------CCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCchhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcc
Confidence 67788999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ChHHHHHHHHHHHhhhcccccccccchhhhhHHHhcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCChhHHHHHH
Q 012143 233 HPAALINYAALLLCKYGSVLAGAGANTGEGACLDQASAVNVAKECLLAALKADPKAAHIWANLANAYYLTGDHRSSGKCL 312 (470)
Q Consensus 233 ~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~la~~~~~~g~~~~A~~~~ 312 (470)
+..++..+|.++. ..|++++|+..|+++++.+|+++.++..+|.++..+|++++|+.+|
T Consensus 106 ~~~~~~~lg~~~~---------------------~~g~~~~A~~~~~~~l~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~ 164 (184)
T 3vtx_A 106 YADAYYKLGLVYD---------------------SMGEHDKAIEAYEKTISIKPGFIRAYQSIGLAYEGKGLRDEAVKYF 164 (184)
T ss_dssp CHHHHHHHHHHHH---------------------HTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred chHHHHHHHHHHH---------------------HhCCchhHHHHHHHHHHhcchhhhHHHHHHHHHHHCCCHHHHHHHH
Confidence 9999999888887 7999999999999999999999999999999999999999999999
Q ss_pred HHHHhcCCCcc
Q 012143 313 EKAAKLEPNCM 323 (470)
Q Consensus 313 ~~a~~~~p~~~ 323 (470)
+++++++|+++
T Consensus 165 ~~al~~~p~~a 175 (184)
T 3vtx_A 165 KKALEKEEKKA 175 (184)
T ss_dssp HHHHHTTHHHH
T ss_pred HHHHhCCccCH
Confidence 99999999853
|
| >2ooe_A Cleavage stimulation factor 77 kDa subunit; HAT domain, structural protein; 3.00A {Mus musculus} SCOP: a.118.8.7 | Back alignment and structure |
|---|
Probab=99.94 E-value=5.2e-24 Score=204.23 Aligned_cols=365 Identities=10% Similarity=0.010 Sum_probs=267.8
Q ss_pred HHHHHHhCCCChhHHHHHHHHHHHhCChhHHHHHHHHHHHHHhhhhcccchhhhHHHHHHhhhccccccccCCCcccccc
Q 012143 64 LVHVARKMPKNAHAHFLLGLMYQRLGQPLKAVSSYEKAEEILLRCEADIARPELLSLVQIHHAQCLLPESSGDNSLDKEL 143 (470)
Q Consensus 64 ~~~~l~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 143 (470)
|+++++.+|.+..+|..++.. ...|++++|...|+++++..|.+. .+|...+.. ..
T Consensus 2 le~al~~~P~~~~~w~~l~~~-~~~~~~~~a~~~~e~al~~~P~~~------------~~w~~~~~~-----------~~ 57 (530)
T 2ooe_A 2 AEKKLEENPYDLDAWSILIRE-AQNQPIDKARKTYERLVAQFPSSG------------RFWKLYIEA-----------EI 57 (530)
T ss_dssp HHHHHHHCTTCHHHHHHHHHH-HHSSCHHHHHHHHHHHHTTCTTCH------------HHHHHHHHH-----------HH
T ss_pred hhhHhhhCCCCHHHHHHHHHH-HHhCCHHHHHHHHHHHHHHCCCCH------------HHHHHHHHH-----------HH
Confidence 678889999999999999985 789999999999999999877642 223333332 23
Q ss_pred CcccHHHHHHHHHHhhhcCccchHHHHHHHH-HHHHcCChHHHHH----HHHHHhhc---CCCChHHHHHHHHHHHH---
Q 012143 144 EPEELEEILSKLKESMQSDTRQAVVWNTLGL-ILLKSGRLQSSIS----VLSSLLAV---DPNNCDCIGNLGIAYFQ--- 212 (470)
Q Consensus 144 ~~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~-~~~~~~~~~~A~~----~~~~a~~~---~~~~~~~~~~la~~~~~--- 212 (470)
+.|++++|...|++++...| ++..|..++. +....|++++|.+ .|++++.. +|.+..+|...+.....
T Consensus 58 ~~~~~~~a~~~~~ral~~~p-~~~lw~~~~~~~~~~~~~~~~a~~~~~~~~~~al~~~g~~~~~~~~w~~~~~~~~~~~~ 136 (530)
T 2ooe_A 58 KAKNYDKVEKLFQRCLMKVL-HIDLWKCYLSYVRETKGKLPSYKEKMAQAYDFALDKIGMEIMSYQIWVDYINFLKGVEA 136 (530)
T ss_dssp HTTCHHHHHHHHHHHTTTCC-CHHHHHHHHHHHHHHTTTSTTHHHHHHHHHHHHHHHTTTSTTCHHHHHHHHHHHHHSCC
T ss_pred hcCCHHHHHHHHHHHHhcCC-ChHHHHHHHHHHHHHccchhhHHHHHHHHHHHHHHHCCCCcccHHHHHHHHHHHhcCCC
Confidence 55778999999999999999 5778888885 4456788888776 78887754 56778899888887765
Q ss_pred ------cCCHHHHHHHHHHHHhhCCCCh--HHHHHHHHHHHh--------------------------------hhcccc
Q 012143 213 ------SGDMEQSAKCFQDLILKDQNHP--AALINYAALLLC--------------------------------KYGSVL 252 (470)
Q Consensus 213 ------~g~~~~A~~~~~~~l~~~p~~~--~~~~~l~~~~~~--------------------------------~~~~~~ 252 (470)
.|++++|...|++++. .|.+. ..|......... ......
T Consensus 137 ~~~~~~~~~~~~a~~~y~~al~-~P~~~~~~~~~~~~~~e~~~~~~~~~~~l~~~~~~~~~A~~~~~~~~~~~~~l~~~~ 215 (530)
T 2ooe_A 137 VGSYAENQRITAVRRVYQRGCV-NPMINIEQLWRDYNKYEEGINIHLAKKMIEDRSRDYMNARRVAKEYETVMKGLDRNA 215 (530)
T ss_dssp CSSTTHHHHHHHHHHHHHHHTT-SCCTTHHHHHHHHHHHHHHHCHHHHHHHHHTTHHHHHHHHHHHHHHHHHHHHCCSSS
T ss_pred cccHHHHhHHHHHHHHHHHHHh-chhhhHHHHHHHHHHHHHhhchhHHHHHHHHhhHHHHHHHHHHHHHHHHHHHhcccc
Confidence 7899999999999999 57653 222222221000 000000
Q ss_pred c--c----------cccchhhhhHHHh----cCCH----HHHHHHHHHHHhcCCCCHHHHHHHHHHHHH-------cCCh
Q 012143 253 A--G----------AGANTGEGACLDQ----ASAV----NVAKECLLAALKADPKAAHIWANLANAYYL-------TGDH 305 (470)
Q Consensus 253 ~--~----------~~~~~~~~~~~~~----~~~~----~~A~~~~~~~~~~~p~~~~~~~~la~~~~~-------~g~~ 305 (470)
. . ...+......... .++. .+++..|++++...|.++.+|..+|..+.. .|++
T Consensus 216 ~~~~p~~~~~~~~~~~~w~~~~~~e~~~~~~~~~~~~~~~~a~~~y~~al~~~p~~~~~w~~~~~~~~~~~~~~~~~g~~ 295 (530)
T 2ooe_A 216 PSVPPQNTPQEAQQVDMWKKYIQWEKSNPLRTEDQTLITKRVMFAYEQCLLVLGHHPDIWYEAAQYLEQSSKLLAEKGDM 295 (530)
T ss_dssp CCCCCC--CCHHHHHHHHHHHHHHHHHCSSCCSCSHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHTTTCC
T ss_pred ccCCCCCChhHHHHHHHHHHHHHHHHcCCccCCcchhHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhchhhhhccch
Confidence 0 0 0111111111111 1232 478899999999999999999999999987 7998
Q ss_pred h-------HHHHHHHHHHh-cCCCcccHHHHHHHHHHHHhhhccCchHHhhhhHHHHHHHhhcCCCCCCCcH-HHHHHHH
Q 012143 306 R-------SSGKCLEKAAK-LEPNCMSTRYAVAVSRIKDAERSQEPTEQLSWAGNEMASILREGDPVQIEPP-IAWAGFA 376 (470)
Q Consensus 306 ~-------~A~~~~~~a~~-~~p~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~l~ 376 (470)
+ +|+..|+++++ ..|++...+..++...... .. ...+...+...+. ..|.++ .+|..++
T Consensus 296 ~~a~~~~~~A~~~~~~Al~~~~p~~~~l~~~~~~~~~~~-----g~---~~~A~~~~~~al~----~~p~~~~~~~~~~~ 363 (530)
T 2ooe_A 296 NNAKLFSDEAANIYERAISTLLKKNMLLYFAYADYEESR-----MK---YEKVHSIYNRLLA----IEDIDPTLVYIQYM 363 (530)
T ss_dssp HHHHHHHHHHHHHHHHHTTTTCSSCHHHHHHHHHHHHHT-----TC---HHHHHHHHHHHHH----SSSSCHHHHHHHHH
T ss_pred hhhhhhhHHHHHHHHHHHHHhCcccHHHHHHHHHHHHhc-----CC---HHHHHHHHHHHhC----ccccCchHHHHHHH
Confidence 7 99999999997 7999888888776543321 11 2222233333333 244443 6999999
Q ss_pred HHHhccccHHHHHHHHHHHhcchhh--hhHhhHHHH-HHHhccHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHcCChHH
Q 012143 377 AVQKTHHEVAAAFETEENELSKMEE--CAGAGESAF-LDQASAVNVAKECLLAALKADPKAAHIWANLANAYYLTGDHRS 453 (470)
Q Consensus 377 ~~~~~~~~~~~A~~~~~~~~~~~~~--~~~~~l~~~-~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~ 453 (470)
.++...|++++|...|.+++...+. ..+...+.+ +...|++++|...|+++++..|+++.+|..++.++...|+.++
T Consensus 364 ~~~~~~~~~~~A~~~~~~Al~~~~~~~~~~~~~a~~~~~~~~~~~~A~~~~e~al~~~p~~~~~~~~~~~~~~~~g~~~~ 443 (530)
T 2ooe_A 364 KFARRAEGIKSGRMIFKKAREDARTRHHVYVTAALMEYYCSKDKSVAFKIFELGLKKYGDIPEYVLAYIDYLSHLNEDNN 443 (530)
T ss_dssp HHHHHHHHHHHHHHHHHHHHTCTTCCTHHHHHHHHHHHHHTCCHHHHHHHHHHHHHHHTTCHHHHHHHHHHHTTTTCHHH
T ss_pred HHHHHhcCHHHHHHHHHHHHhccCCchHHHHHHHHHHHHHcCChhHHHHHHHHHHHHCCCCHHHHHHHHHHHHhCCCHhh
Confidence 9999999999999999998875443 334444433 3468999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHhhc
Q 012143 454 SGKCLEKVLMVYC 466 (470)
Q Consensus 454 A~~~~~~al~~~~ 466 (470)
|...|+++++..+
T Consensus 444 Ar~~~~~al~~~~ 456 (530)
T 2ooe_A 444 TRVLFERVLTSGS 456 (530)
T ss_dssp HHHHHHHHHHSCC
T ss_pred HHHHHHHHHhccC
Confidence 9999999998753
|
| >4a1s_A PINS, partner of inscuteable; cell cycle, LGN, mitotic spindle orientation, asymmetric CEL divisions; 2.10A {Drosophila melanogaster} | Back alignment and structure |
|---|
Probab=99.94 E-value=1.9e-25 Score=207.57 Aligned_cols=283 Identities=14% Similarity=0.083 Sum_probs=234.3
Q ss_pred CcchhhhcccchhhhhcChhhHHHHHHHHHHhCCCCh----hHHHHHHHHHHHhCChhHHHHHHHHHHHHHhhhhcccch
Q 012143 39 ADGDQSGLGTSSSSREEKVSSLKTGLVHVARKMPKNA----HAHFLLGLMYQRLGQPLKAVSSYEKAEEILLRCEADIAR 114 (470)
Q Consensus 39 ~~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~p~~~----~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~ 114 (470)
....++.+|.. +...|++++|+..|+++++..|+++ .++..+|.++...|++++|+.+|+++++....
T Consensus 47 ~~~~l~~~g~~-~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~------- 118 (411)
T 4a1s_A 47 MCLELALEGER-LCNAGDCRAGVAFFQAAIQAGTEDLRTLSAIYSQLGNAYFYLGDYNKAMQYHKHDLTLAKS------- 118 (411)
T ss_dssp HHHHHHHHHHH-HHHTTCHHHHHHHHHHHHHHCCSCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHH-------
T ss_pred HHHHHHHHHHH-HHHhCcHHHHHHHHHHHHHhcccChhHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHH-------
Confidence 44567789999 9999999999999999999999987 58999999999999999999999999886311
Q ss_pred hhhHHHHHHhhhccccccccCCCccccccCcccHHHHHHHHHHhhhcCccchHHHHHHHHHHHHcCChHHHHHHHHHHhh
Q 012143 115 PELLSLVQIHHAQCLLPESSGDNSLDKELEPEELEEILSKLKESMQSDTRQAVVWNTLGLILLKSGRLQSSISVLSSLLA 194 (470)
Q Consensus 115 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~ 194 (470)
....|....++..+|.++...|++++|+.+|++++.
T Consensus 119 --------------------------------------------~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~ 154 (411)
T 4a1s_A 119 --------------------------------------------MNDRLGEAKSSGNLGNTLKVMGRFDEAAICCERHLT 154 (411)
T ss_dssp --------------------------------------------TTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred --------------------------------------------ccCchHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHH
Confidence 011345567889999999999999999999999998
Q ss_pred c------CCCChHHHHHHHHHHHHcCC-----------------HHHHHHHHHHHHhhCCC------ChHHHHHHHHHHH
Q 012143 195 V------DPNNCDCIGNLGIAYFQSGD-----------------MEQSAKCFQDLILKDQN------HPAALINYAALLL 245 (470)
Q Consensus 195 ~------~~~~~~~~~~la~~~~~~g~-----------------~~~A~~~~~~~l~~~p~------~~~~~~~l~~~~~ 245 (470)
. .|....++..+|.++...|+ +++|+..+++++.+.+. ...++..+
T Consensus 155 ~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~~~~~~~~~~~a~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l----- 229 (411)
T 4a1s_A 155 LARQLGDRLSEGRALYNLGNVYHAKGKHLGQRNPGKFGDDVKEALTRAVEFYQENLKLMRDLGDRGAQGRACGNL----- 229 (411)
T ss_dssp HHHHHTCHHHHHHHHHHHHHHHHHHHHHHHHHSTTCCCHHHHHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHH-----
T ss_pred HHHHhhchHHHHHHHHHHHHHHHHcCcccccccchhhhhhhhHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHH-----
Confidence 8 45567799999999999999 99999999998876432 22234444
Q ss_pred hhhcccccccccchhhhhHHHhcCCHHHHHHHHHHHHhcCCCCH------HHHHHHHHHHHHcCChhHHHHHHHHHHhcC
Q 012143 246 CKYGSVLAGAGANTGEGACLDQASAVNVAKECLLAALKADPKAA------HIWANLANAYYLTGDHRSSGKCLEKAAKLE 319 (470)
Q Consensus 246 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~p~~~------~~~~~la~~~~~~g~~~~A~~~~~~a~~~~ 319 (470)
|.++...|++++|+.++++++++.|... .++..+|.++...|++++|+.+|++++...
T Consensus 230 ----------------a~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~ 293 (411)
T 4a1s_A 230 ----------------GNTYYLLGDFQAAIEHHQERLRIAREFGDRAAERRANSNLGNSHIFLGQFEDAAEHYKRTLALA 293 (411)
T ss_dssp ----------------HHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHH
T ss_pred ----------------HHHHHHcCChHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHCcCHHHHHHHHHHHHHHH
Confidence 4555589999999999999999876533 389999999999999999999999999887
Q ss_pred CCcccHHHHHHHHHHHHhhhccCchHHhhhhHHHHHHHhhcCCCCCCCcHHHHHHHHHHHhccccHHHHHHHHHHHhcch
Q 012143 320 PNCMSTRYAVAVSRIKDAERSQEPTEQLSWAGNEMASILREGDPVQIEPPIAWAGFAAVQKTHHEVAAAFETEENELSKM 399 (470)
Q Consensus 320 p~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~ 399 (470)
|....... ...++..+|.++...|++++|+..+.+.+...
T Consensus 294 ~~~~~~~~----------------------------------------~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~ 333 (411)
T 4a1s_A 294 VELGEREV----------------------------------------EAQSCYSLGNTYTLLHEFNTAIEYHNRHLAIA 333 (411)
T ss_dssp HHTTCHHH----------------------------------------HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHH
T ss_pred HHcCCHHH----------------------------------------HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHH
Confidence 65432111 13578899999999999999999999866532
Q ss_pred h--------hhhHhhHHHHHHHhccHHHHHHHHHHHHhcCCCc
Q 012143 400 E--------ECAGAGESAFLDQASAVNVAKECLLAALKADPKA 434 (470)
Q Consensus 400 ~--------~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~p~~ 434 (470)
+ ..++..+|.++...|++++|+.+|++++++.+..
T Consensus 334 ~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~ 376 (411)
T 4a1s_A 334 QELGDRIGEARACWSLGNAHSAIGGHERALKYAEQHLQLAXXX 376 (411)
T ss_dssp HHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCHH
T ss_pred HHCCChHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHhhc
Confidence 2 2478899999999999999999999999987654
|
| >2q7f_A YRRB protein; TPR, protein binding; 2.49A {Bacillus subtilis} SCOP: k.38.1.1 | Back alignment and structure |
|---|
Probab=99.94 E-value=6.7e-25 Score=188.25 Aligned_cols=210 Identities=10% Similarity=0.087 Sum_probs=173.7
Q ss_pred ccCcccHHHHHHHHHHhhhcCccchHHHHHHHHHHHHcCChHHHHHHHHHHhhcCCCChHHHHHHHHHHHHcCCHHHHHH
Q 012143 142 ELEPEELEEILSKLKESMQSDTRQAVVWNTLGLILLKSGRLQSSISVLSSLLAVDPNNCDCIGNLGIAYFQSGDMEQSAK 221 (470)
Q Consensus 142 ~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~la~~~~~~g~~~~A~~ 221 (470)
+...|++++|+..|++++..+|.++.++..+|.++...|++++|+..|+++++.+|.+..++..+|.++...|++++|+.
T Consensus 33 ~~~~~~~~~A~~~~~~~l~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~ 112 (243)
T 2q7f_A 33 GSEFGDYEKAAEAFTKAIEENKEDAIPYINFANLLSSVNELERALAFYDKALELDSSAATAYYGAGNVYVVKEMYKEAKD 112 (243)
T ss_dssp ---------CCTTHHHHHTTCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHH
T ss_pred HHHhhCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCcchHHHHHHHHHHHHhccHHHHHH
Confidence 56778889999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHhhCCCChHHHHHHHHHHHhhhcccccccccchhhhhHHHhcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHH
Q 012143 222 CFQDLILKDQNHPAALINYAALLLCKYGSVLAGAGANTGEGACLDQASAVNVAKECLLAALKADPKAAHIWANLANAYYL 301 (470)
Q Consensus 222 ~~~~~l~~~p~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~la~~~~~ 301 (470)
.++++++..|.++..+..++.++. ..|++++|+..++++++..|+++.++..+|.++..
T Consensus 113 ~~~~~~~~~~~~~~~~~~~a~~~~---------------------~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~ 171 (243)
T 2q7f_A 113 MFEKALRAGMENGDLFYMLGTVLV---------------------KLEQPKLALPYLQRAVELNENDTEARFQFGMCLAN 171 (243)
T ss_dssp HHHHHHHHTCCSHHHHHHHHHHHH---------------------HTSCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHhCCCCHHHHHHHHHHHH---------------------HhccHHHHHHHHHHHHHhCCccHHHHHHHHHHHHH
Confidence 999999999999888888887776 68999999999999999999999999999999999
Q ss_pred cCChhHHHHHHHHHHhcCCCcccHHHHHHHHHHHHhhhccCchHHhhhhHHHHHHHhhcCCCCCCCcHHHHHHHHHHHhc
Q 012143 302 TGDHRSSGKCLEKAAKLEPNCMSTRYAVAVSRIKDAERSQEPTEQLSWAGNEMASILREGDPVQIEPPIAWAGFAAVQKT 381 (470)
Q Consensus 302 ~g~~~~A~~~~~~a~~~~p~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 381 (470)
.|++++|+..+++++...|++...
T Consensus 172 ~~~~~~A~~~~~~~~~~~~~~~~~-------------------------------------------------------- 195 (243)
T 2q7f_A 172 EGMLDEALSQFAAVTEQDPGHADA-------------------------------------------------------- 195 (243)
T ss_dssp HTCCHHHHHHHHHHHHHCTTCHHH--------------------------------------------------------
T ss_pred cCCHHHHHHHHHHHHHhCcccHHH--------------------------------------------------------
Confidence 999999999999999888875432
Q ss_pred cccHHHHHHHHHHHhcchhhhhHhhHHHHHHHhccHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHcCC
Q 012143 382 HHEVAAAFETEENELSKMEECAGAGESAFLDQASAVNVAKECLLAALKADPKAAHIWANLANAYYLTGD 450 (470)
Q Consensus 382 ~~~~~~A~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~ 450 (470)
+..+|.++...|++++|+.+|+++++.+|+++.++..++.+....|+
T Consensus 196 ----------------------~~~la~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~~~~l~~~~~~ 242 (243)
T 2q7f_A 196 ----------------------FYNAGVTYAYKENREKALEMLDKAIDIQPDHMLALHAKKLLGHHHHH 242 (243)
T ss_dssp ----------------------HHHHHHHHHHTTCTTHHHHHHHHHHHHCTTCHHHHHHHTC-------
T ss_pred ----------------------HHHHHHHHHHccCHHHHHHHHHHHHccCcchHHHHHHHHHHHhhccC
Confidence 23344477778888999999999999999999999998887665543
|
| >1xnf_A Lipoprotein NLPI; TPR, tetratricopeptide, structural genomi unknown function; 1.98A {Escherichia coli} SCOP: a.118.8.1 | Back alignment and structure |
|---|
Probab=99.93 E-value=8.5e-25 Score=191.39 Aligned_cols=198 Identities=19% Similarity=0.204 Sum_probs=115.8
Q ss_pred cchhhhcccchhhhhcChhhHHHHHHHHHHhC----CCChhHHHHHHHHHHHhCChhHHHHHHHHHHHHHhhhhcccchh
Q 012143 40 DGDQSGLGTSSSSREEKVSSLKTGLVHVARKM----PKNAHAHFLLGLMYQRLGQPLKAVSSYEKAEEILLRCEADIARP 115 (470)
Q Consensus 40 ~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~----p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~ 115 (470)
......++.. ....|++++|+..|+++++.. |.++.+++.+|.++...|++++|+..|+++++.+|
T Consensus 5 ~~~~~~~~~~-~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~~--------- 74 (275)
T 1xnf_A 5 WRKSEVLAVP-LQPTLQQEVILARMEQILASRALTDDERAQLLYERGVLYDSLGLRALARNDFSQALAIRP--------- 74 (275)
T ss_dssp --CGGGSCCC-CCCCHHHHHHHHHHHHHHTSSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCC---------
T ss_pred cccCcceeec-cCccchHHHHHHHHHHHHhcccccCchhHHHHHHHHHHHHHcccHHHHHHHHHHHHHcCC---------
Confidence 3445566777 778899999999999999873 55678899999999999999999999998887643
Q ss_pred hhHHHHHHhhhccccccccCCCccccccCcccHHHHHHHHHHhhhcCccchHHHHHHHHHHHHcCChHHHHHHHHHHhhc
Q 012143 116 ELLSLVQIHHAQCLLPESSGDNSLDKELEPEELEEILSKLKESMQSDTRQAVVWNTLGLILLKSGRLQSSISVLSSLLAV 195 (470)
Q Consensus 116 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~ 195 (470)
.++.++..+|.++...|++++|+.+|+++++.
T Consensus 75 ------------------------------------------------~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~ 106 (275)
T 1xnf_A 75 ------------------------------------------------DMPEVFNYLGIYLTQAGNFDAAYEAFDSVLEL 106 (275)
T ss_dssp ------------------------------------------------CCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred ------------------------------------------------CcHHHHHHHHHHHHHccCHHHHHHHHHHHHhc
Confidence 33444445555555555555555555555555
Q ss_pred CCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCChHHHHHHHHHHHhhhcccccccccchhhhhHHHhcCCHHHHH
Q 012143 196 DPNNCDCIGNLGIAYFQSGDMEQSAKCFQDLILKDQNHPAALINYAALLLCKYGSVLAGAGANTGEGACLDQASAVNVAK 275 (470)
Q Consensus 196 ~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~ 275 (470)
+|.++.++..+|.++...|++++|+..|++++..+|++.......+... ..|++++|+
T Consensus 107 ~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~----------------------~~~~~~~A~ 164 (275)
T 1xnf_A 107 DPTYNYAHLNRGIALYYGGRDKLAQDDLLAFYQDDPNDPFRSLWLYLAE----------------------QKLDEKQAK 164 (275)
T ss_dssp CTTCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHH----------------------HHHCHHHHH
T ss_pred CccccHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCCChHHHHHHHHHH----------------------HhcCHHHHH
Confidence 5555555555555555555555555555555555554443332222111 234455555
Q ss_pred HHHHHHHhcCCCCHHHHHHHHHHHHHcCChhHHHHHHHHHHhc
Q 012143 276 ECLLAALKADPKAAHIWANLANAYYLTGDHRSSGKCLEKAAKL 318 (470)
Q Consensus 276 ~~~~~~~~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~ 318 (470)
..+.+++...|.+...+. ++.++...++.++|+..+++++..
T Consensus 165 ~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~a~~~~~~~~~~ 206 (275)
T 1xnf_A 165 EVLKQHFEKSDKEQWGWN-IVEFYLGNISEQTLMERLKADATD 206 (275)
T ss_dssp HHHHHHHHHSCCCSTHHH-HHHHHTTSSCHHHHHHHHHHHCCS
T ss_pred HHHHHHHhcCCcchHHHH-HHHHHHHhcCHHHHHHHHHHHhcc
Confidence 555555554444433322 444444444445555555544443
|
| >3vtx_A MAMA; tetratricopeptide repeats (TPR) containing protein, peptide protein, protein binding; 1.75A {Candidatus magnetobacterium bavaricum} PDB: 3vty_A | Back alignment and structure |
|---|
Probab=99.93 E-value=2.1e-24 Score=176.68 Aligned_cols=141 Identities=18% Similarity=0.305 Sum_probs=134.1
Q ss_pred cchHHHHHHHHHHHHcCChHHHHHHHHHHhhcCCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCChHHHHHHHHH
Q 012143 164 RQAVVWNTLGLILLKSGRLQSSISVLSSLLAVDPNNCDCIGNLGIAYFQSGDMEQSAKCFQDLILKDQNHPAALINYAAL 243 (470)
Q Consensus 164 ~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~l~~~ 243 (470)
+++.+|+.+|.++..+|++++|+..|+++++++|+++.++..+|.++...|++++|+..+.+++...|+++.++..++.+
T Consensus 3 e~~~iy~~lG~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~ 82 (184)
T 3vtx_A 3 ETTTIYMDIGDKKRTKGDFDGAIRAYKKVLKADPNNVETLLKLGKTYMDIGLPNDAIESLKKFVVLDTTSAEAYYILGSA 82 (184)
T ss_dssp -CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCCCHHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCchhHHHHHHHHHH
Confidence 45789999999999999999999999999999999999999999999999999999999999999999999999998888
Q ss_pred HHhhhcccccccccchhhhhHHHhcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCChhHHHHHHHHHHhcCCCcc
Q 012143 244 LLCKYGSVLAGAGANTGEGACLDQASAVNVAKECLLAALKADPKAAHIWANLANAYYLTGDHRSSGKCLEKAAKLEPNCM 323 (470)
Q Consensus 244 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~p~~~ 323 (470)
+. ..++++.|+..+.+++...|+++.++..+|.++..+|++++|+..|+++++.+|+++
T Consensus 83 ~~---------------------~~~~~~~a~~~~~~a~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~~l~~~p~~~ 141 (184)
T 3vtx_A 83 NF---------------------MIDEKQAAIDALQRAIALNTVYADAYYKLGLVYDSMGEHDKAIEAYEKTISIKPGFI 141 (184)
T ss_dssp HH---------------------HTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCH
T ss_pred HH---------------------HcCCHHHHHHHHHHHHHhCccchHHHHHHHHHHHHhCCchhHHHHHHHHHHhcchhh
Confidence 87 699999999999999999999999999999999999999999999999999999865
Q ss_pred cH
Q 012143 324 ST 325 (470)
Q Consensus 324 ~~ 325 (470)
.+
T Consensus 142 ~~ 143 (184)
T 3vtx_A 142 RA 143 (184)
T ss_dssp HH
T ss_pred hH
Confidence 43
|
| >2ho1_A Type 4 fimbrial biogenesis protein PILF; type IV pilus biogenesis, TPR, superhelix, protein binding; HET: MSE; 2.00A {Pseudomonas aeruginosa} PDB: 2fi7_A | Back alignment and structure |
|---|
Probab=99.93 E-value=3.1e-24 Score=185.26 Aligned_cols=161 Identities=17% Similarity=0.188 Sum_probs=139.7
Q ss_pred ccHHHHHHHHHHhhhcCccchHHHHHHHHHHHHcCChHHHHHHHHHHhh--cCCCChHHHHHHHHHHHHcCCHHHHHHHH
Q 012143 146 EELEEILSKLKESMQSDTRQAVVWNTLGLILLKSGRLQSSISVLSSLLA--VDPNNCDCIGNLGIAYFQSGDMEQSAKCF 223 (470)
Q Consensus 146 ~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~--~~~~~~~~~~~la~~~~~~g~~~~A~~~~ 223 (470)
|++++|+..+++++..+|.++.++..+|.++...|++++|+.+|++++. ..|.+..++..+|.++...|++++|+..+
T Consensus 85 ~~~~~A~~~~~~a~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~ 164 (252)
T 2ho1_A 85 MEPKLADEEYRKALASDSRNARVLNNYGGFLYEQKRYEEAYQRLLEASQDTLYPERSRVFENLGLVSLQMKKPAQAKEYF 164 (252)
T ss_dssp TCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHTTCTTCTTHHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHHCcCcHHHHHHHHHHHHHHhHHHHHHHHHHHHHhCccCcccHHHHHHHHHHHHHcCCHHHHHHHH
Confidence 3345555555555555677788889999999999999999999999999 78888899999999999999999999999
Q ss_pred HHHHhhCCCChHHHHHHHHHHHhhhcccccccccchhhhhHHHhcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcC
Q 012143 224 QDLILKDQNHPAALINYAALLLCKYGSVLAGAGANTGEGACLDQASAVNVAKECLLAALKADPKAAHIWANLANAYYLTG 303 (470)
Q Consensus 224 ~~~l~~~p~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~la~~~~~~g 303 (470)
++++...|.+..++..++.++. ..|++++|+.+++++++..|.+...+..++.++...|
T Consensus 165 ~~~~~~~~~~~~~~~~la~~~~---------------------~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~g 223 (252)
T 2ho1_A 165 EKSLRLNRNQPSVALEMADLLY---------------------KEREYVPARQYYDLFAQGGGQNARSLLLGIRLAKVFE 223 (252)
T ss_dssp HHHHHHCSCCHHHHHHHHHHHH---------------------HTTCHHHHHHHHHHHHTTSCCCHHHHHHHHHHHHHTT
T ss_pred HHHHhcCcccHHHHHHHHHHHH---------------------HcCCHHHHHHHHHHHHHhCcCcHHHHHHHHHHHHHcc
Confidence 9999999999988888888777 6899999999999999999999999999999999999
Q ss_pred ChhHHHHHHHHHHhcCCCcccHHH
Q 012143 304 DHRSSGKCLEKAAKLEPNCMSTRY 327 (470)
Q Consensus 304 ~~~~A~~~~~~a~~~~p~~~~~~~ 327 (470)
++++|..+++++++..|+++....
T Consensus 224 ~~~~A~~~~~~~~~~~p~~~~~~~ 247 (252)
T 2ho1_A 224 DRDTAASYGLQLKRLYPGSLEYQE 247 (252)
T ss_dssp CHHHHHHHHHHHHHHCTTSHHHHH
T ss_pred CHHHHHHHHHHHHHHCCCCHHHHH
Confidence 999999999999999998776543
|
| >2ho1_A Type 4 fimbrial biogenesis protein PILF; type IV pilus biogenesis, TPR, superhelix, protein binding; HET: MSE; 2.00A {Pseudomonas aeruginosa} PDB: 2fi7_A | Back alignment and structure |
|---|
Probab=99.93 E-value=5.5e-24 Score=183.68 Aligned_cols=209 Identities=16% Similarity=0.179 Sum_probs=178.2
Q ss_pred hcCccc-hHHHHHHHHHHHHcCChHHHHHHHHHHhhcCCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCChHHHH
Q 012143 160 QSDTRQ-AVVWNTLGLILLKSGRLQSSISVLSSLLAVDPNNCDCIGNLGIAYFQSGDMEQSAKCFQDLILKDQNHPAALI 238 (470)
Q Consensus 160 ~~~p~~-~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~ 238 (470)
..+|.+ +.+++.+|.++...|++++|+.+|+++++.+|.++.++..+|.++...|++++|+..+++++..+|.+..++.
T Consensus 30 ~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~ 109 (252)
T 2ho1_A 30 DKGRDEARDAYIQLGLGYLQRGNTEQAKVPLRKALEIDPSSADAHAALAVVFQTEMEPKLADEEYRKALASDSRNARVLN 109 (252)
T ss_dssp -CCHHHHHHHHHHHHHHHHHTTCTGGGHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHH
T ss_pred ccchHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCChHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCcCcHHHHH
Confidence 346665 8899999999999999999999999999999999999999999999999999999999999999999999998
Q ss_pred HHHHHHHhhhcccccccccchhhhhHHHhcCCHHHHHHHHHHHHh--cCCCCHHHHHHHHHHHHHcCChhHHHHHHHHHH
Q 012143 239 NYAALLLCKYGSVLAGAGANTGEGACLDQASAVNVAKECLLAALK--ADPKAAHIWANLANAYYLTGDHRSSGKCLEKAA 316 (470)
Q Consensus 239 ~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~--~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~a~ 316 (470)
.++.++. ..|++++|+.++++++. ..|.++.++..+|.++...|++++|+.++++++
T Consensus 110 ~la~~~~---------------------~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~ 168 (252)
T 2ho1_A 110 NYGGFLY---------------------EQKRYEEAYQRLLEASQDTLYPERSRVFENLGLVSLQMKKPAQAKEYFEKSL 168 (252)
T ss_dssp HHHHHHH---------------------HTTCHHHHHHHHHHHTTCTTCTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHHH---------------------HHhHHHHHHHHHHHHHhCccCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 8888877 79999999999999999 888899999999999999999999999999999
Q ss_pred hcCCCcccHHHHHHHHHHHHhhhccCchHHhhhhHHHHHHHhhcCCCCCCCcHHHHHHHHHHHhccccHHHHHHHHHHHh
Q 012143 317 KLEPNCMSTRYAVAVSRIKDAERSQEPTEQLSWAGNEMASILREGDPVQIEPPIAWAGFAAVQKTHHEVAAAFETEENEL 396 (470)
Q Consensus 317 ~~~p~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~ 396 (470)
...|.+.. ++..+
T Consensus 169 ~~~~~~~~----------------------------------------------~~~~l--------------------- 181 (252)
T 2ho1_A 169 RLNRNQPS----------------------------------------------VALEM--------------------- 181 (252)
T ss_dssp HHCSCCHH----------------------------------------------HHHHH---------------------
T ss_pred hcCcccHH----------------------------------------------HHHHH---------------------
Confidence 99887532 22333
Q ss_pred cchhhhhHhhHHHHHHHhccHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHcCChHHHHHHHHHHHHhhcc
Q 012143 397 SKMEECAGAGESAFLDQASAVNVAKECLLAALKADPKAAHIWANLANAYYLTGDHRSSGKCLEKVLMVYCS 467 (470)
Q Consensus 397 ~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~ 467 (470)
|.++...|++++|+.+++++++..|+++.++..++.++...|++++|..++++++++.|.
T Consensus 182 -----------a~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~~p~ 241 (252)
T 2ho1_A 182 -----------ADLLYKEREYVPARQYYDLFAQGGGQNARSLLLGIRLAKVFEDRDTAASYGLQLKRLYPG 241 (252)
T ss_dssp -----------HHHHHHTTCHHHHHHHHHHHHTTSCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT
T ss_pred -----------HHHHHHcCCHHHHHHHHHHHHHhCcCcHHHHHHHHHHHHHccCHHHHHHHHHHHHHHCCC
Confidence 335556666677777777777777777777777777777777777777777777776654
|
| >3e4b_A ALGK; tetratricopeptide repeat, superhelix, alginate biosynt pseudomonas, protein binding; 2.50A {Pseudomonas fluorescens} | Back alignment and structure |
|---|
Probab=99.93 E-value=4e-25 Score=206.53 Aligned_cols=354 Identities=12% Similarity=0.034 Sum_probs=254.4
Q ss_pred hhcccchhhhhcChhhHHHHHHHHHHhCCCChhHHHHHHHHHHHhCCh---hHHHHHHHHHHHHHhhhhcccchhhhHHH
Q 012143 44 SGLGTSSSSREEKVSSLKTGLVHVARKMPKNAHAHFLLGLMYQRLGQP---LKAVSSYEKAEEILLRCEADIARPELLSL 120 (470)
Q Consensus 44 ~~~~~~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~l~~~~~~~g~~---~~A~~~~~~al~~~~~~~~~~~~~~~~~~ 120 (470)
..+|.. ....|++++|...|+++.+. .++.+++.+|.+|...|++ ++|+.+|+++++.+|
T Consensus 7 ~~la~~-~~~~g~~~~A~~~~~~aa~~--g~~~A~~~Lg~~y~~~g~~~d~~~A~~~~~~A~~~~~-------------- 69 (452)
T 3e4b_A 7 QRLANE-ALKRGDTVTAQQNYQQLAEL--GYSEAQVGLADIQVGTRDPAQIKQAEATYRAAADTSP-------------- 69 (452)
T ss_dssp HHHHHH-HHHHHHHHHHHHHHHHHHHH--TCCTGGGTCC-----------------------------------------
T ss_pred HHHHHH-HHhCCCHHHHHHHHHHHHHC--CCHHHHHHHHHHHHccCCCCCHHHHHHHHHHHHhCCH--------------
Confidence 346777 88999999999999999765 6789999999999999999 999999999997522
Q ss_pred HHHhhhccccccccCCCccccccCcccHHHHHHHHHHhhhcCccchHHHHHHHHHHHHcCChHHHHHHHHHHhhc-CCCC
Q 012143 121 VQIHHAQCLLPESSGDNSLDKELEPEELEEILSKLKESMQSDTRQAVVWNTLGLILLKSGRLQSSISVLSSLLAV-DPNN 199 (470)
Q Consensus 121 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~-~~~~ 199 (470)
.+++.++.++...+.. ..+++++|+.+|++++.. .++.+++.+|.+|...+...++...++..... .+.+
T Consensus 70 -~A~~~Lg~~~~~~~~~------~~~~~~~A~~~~~~Aa~~--g~~~A~~~Lg~~y~~~~~~~~~~~a~~~~~~a~~~g~ 140 (452)
T 3e4b_A 70 -RAQARLGRLLAAKPGA------TEAEHHEAESLLKKAFAN--GEGNTLIPLAMLYLQYPHSFPNVNAQQQISQWQAAGY 140 (452)
T ss_dssp --CHHHHHHHHHTC--C------CHHHHHHHHHHHHHHHHT--TCSSCHHHHHHHHHHCGGGCTTCCHHHHHHHHHHHTC
T ss_pred -HHHHHHHHHHHhCCCC------CCcCHHHHHHHHHHHHHC--CCHHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHCCC
Confidence 2233444432222211 346889999999999984 55679999999999887755544444433332 2456
Q ss_pred hHHHHHHHHHHHHcCCHHHHHHH----HHHHHhhCCCChHHHHHHHHHHHhhhcccccccccchhhhhHHHhcC---CHH
Q 012143 200 CDCIGNLGIAYFQSGDMEQSAKC----FQDLILKDQNHPAALINYAALLLCKYGSVLAGAGANTGEGACLDQAS---AVN 272 (470)
Q Consensus 200 ~~~~~~la~~~~~~g~~~~A~~~----~~~~l~~~p~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~ 272 (470)
+.+++.+|.+|...+.++++... ++.+...+ +.+++.+|.++. ..| +++
T Consensus 141 ~~a~~~Lg~~y~~~~~~~~~~~~a~~~~~~a~~~~---~~a~~~Lg~~~~---------------------~~g~~~~~~ 196 (452)
T 3e4b_A 141 PEAGLAQVLLYRTQGTYDQHLDDVERICKAALNTT---DICYVELATVYQ---------------------KKQQPEQQA 196 (452)
T ss_dssp TTHHHHHHHHHHHHTCGGGGHHHHHHHHHHHTTTC---TTHHHHHHHHHH---------------------HTTCHHHHH
T ss_pred HHHHHHHHHHHHcCCCcccCHHHHHHHHHHHHcCC---HHHHHHHHHHHH---------------------HcCCcccHH
Confidence 88999999999999965555544 44444444 448888888887 577 899
Q ss_pred HHHHHHHHHHhcCCCCHHHHHHHHHHHHHc----CChhHHHHHHHHHHhcCCCcccHHHHHHHHHHHHhhhccCchHHhh
Q 012143 273 VAKECLLAALKADPKAAHIWANLANAYYLT----GDHRSSGKCLEKAAKLEPNCMSTRYAVAVSRIKDAERSQEPTEQLS 348 (470)
Q Consensus 273 ~A~~~~~~~~~~~p~~~~~~~~la~~~~~~----g~~~~A~~~~~~a~~~~p~~~~~~~~l~~~~~~~~~~~~~~~~~~~ 348 (470)
+|+.+|+++.+..|.....++++|.+|... +++++|+.+|+++. |+++.+++.++...+.... .....
T Consensus 197 ~A~~~~~~aa~~g~~~a~~~~~Lg~~y~~g~~~~~d~~~A~~~~~~aa---~g~~~a~~~Lg~~~~~~~~-----~~d~~ 268 (452)
T 3e4b_A 197 ELLKQMEAGVSRGTVTAQRVDSVARVLGDATLGTPDEKTAQALLEKIA---PGYPASWVSLAQLLYDFPE-----LGDVE 268 (452)
T ss_dssp HHHHHHHHHHHTTCSCHHHHHHHHHHHTCGGGSSCCHHHHHHHHHHHG---GGSTHHHHHHHHHHHHSGG-----GCCHH
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCCCCCHHHHHHHHHHHc---CCCHHHHHHHHHHHHhCCC-----CCCHH
Confidence 999999999999999999999999999766 79999999999998 8999999998876432111 11233
Q ss_pred hhHHHHHHHhhcCCCCCCCcHHHHHHHHHHHhccc-----cHHHHHHHHHHHhcchhhhhHhhHHHHHHH----hccHHH
Q 012143 349 WAGNEMASILREGDPVQIEPPIAWAGFAAVQKTHH-----EVAAAFETEENELSKMEECAGAGESAFLDQ----ASAVNV 419 (470)
Q Consensus 349 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~-----~~~~A~~~~~~~~~~~~~~~~~~l~~~~~~----~~~~~~ 419 (470)
.+...+.+.... .++.+++.+|.+|. .| ++++|+..|.++. +....+++.+|.+|.. ..++++
T Consensus 269 ~A~~~~~~Aa~~------g~~~A~~~Lg~~y~-~G~g~~~d~~~A~~~~~~Aa-~g~~~A~~~Lg~~y~~G~g~~~d~~~ 340 (452)
T 3e4b_A 269 QMMKYLDNGRAA------DQPRAELLLGKLYY-EGKWVPADAKAAEAHFEKAV-GREVAADYYLGQIYRRGYLGKVYPQK 340 (452)
T ss_dssp HHHHHHHHHHHT------TCHHHHHHHHHHHH-HCSSSCCCHHHHHHHHHTTT-TTCHHHHHHHHHHHHTTTTSSCCHHH
T ss_pred HHHHHHHHHHHC------CCHHHHHHHHHHHH-cCCCCCCCHHHHHHHHHHHh-CCCHHHHHHHHHHHHCCCCCCcCHHH
Confidence 344444444433 35789999999998 55 9999999999999 8888999999999887 448999
Q ss_pred HHHHHHHHHhcCCCcHHHHHHHHHHHHH----cCChHHHHHHHHHHHHhh
Q 012143 420 AKECLLAALKADPKAAHIWANLANAYYL----TGDHRSSGKCLEKVLMVY 465 (470)
Q Consensus 420 A~~~~~~al~~~p~~~~~~~~la~~~~~----~g~~~~A~~~~~~al~~~ 465 (470)
|+.+|+++.+ +.++.+.++||.+|.. ..++.+|..+|+++.+.-
T Consensus 341 A~~~~~~Aa~--~g~~~A~~~Lg~~y~~G~g~~~d~~~A~~~~~~A~~~g 388 (452)
T 3e4b_A 341 ALDHLLTAAR--NGQNSADFAIAQLFSQGKGTKPDPLNAYVFSQLAKAQD 388 (452)
T ss_dssp HHHHHHHHHT--TTCTTHHHHHHHHHHSCTTBCCCHHHHHHHHHHHHTTC
T ss_pred HHHHHHHHHh--hChHHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHHCC
Confidence 9999999987 4678899999999975 569999999999998764
|
| >1ouv_A Conserved hypothetical secreted protein; TPR repeat, HCP repeat, cysteine rich protein, loop-helix-TU repeat protein, hydrolase; 2.00A {Helicobacter pylori} SCOP: a.118.18.1 | Back alignment and structure |
|---|
Probab=99.93 E-value=2.5e-23 Score=181.78 Aligned_cols=234 Identities=13% Similarity=0.080 Sum_probs=144.0
Q ss_pred CCCChhHHHHHHHHHHHhCChhHHHHHHHHHHHHHhhhhcccchhhhHHHHHHhhhccccccccCCCccccccCcccHHH
Q 012143 71 MPKNAHAHFLLGLMYQRLGQPLKAVSSYEKAEEILLRCEADIARPELLSLVQIHHAQCLLPESSGDNSLDKELEPEELEE 150 (470)
Q Consensus 71 ~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 150 (470)
+|.++.+++.+|.++...|++++|+.+|+++++
T Consensus 2 ~~~~~~a~~~lg~~~~~~~~~~~A~~~~~~a~~----------------------------------------------- 34 (273)
T 1ouv_A 2 AEQDPKELVGLGAKSYKEKDFTQAKKYFEKACD----------------------------------------------- 34 (273)
T ss_dssp ---CHHHHHHHHHHHHHTTCHHHHHHHHHHHHH-----------------------------------------------
T ss_pred CCCChHHHHHHHHHHHhCCCHHHHHHHHHHHHH-----------------------------------------------
Confidence 577888888888888888888888888887765
Q ss_pred HHHHHHHhhhcCccchHHHHHHHHHHHH----cCChHHHHHHHHHHhhcCCCChHHHHHHHHHHHH----cCCHHHHHHH
Q 012143 151 ILSKLKESMQSDTRQAVVWNTLGLILLK----SGRLQSSISVLSSLLAVDPNNCDCIGNLGIAYFQ----SGDMEQSAKC 222 (470)
Q Consensus 151 A~~~~~~~~~~~p~~~~~~~~l~~~~~~----~~~~~~A~~~~~~a~~~~~~~~~~~~~la~~~~~----~g~~~~A~~~ 222 (470)
|+++.+++.+|.++.. .+++++|+.+|+++++.+ ++.++..+|.++.. .+++++|+..
T Consensus 35 ------------~~~~~a~~~lg~~~~~g~~~~~~~~~A~~~~~~a~~~~--~~~a~~~lg~~~~~g~~~~~~~~~A~~~ 100 (273)
T 1ouv_A 35 ------------LKENSGCFNLGVLYYQGQGVEKNLKKAASFYAKACDLN--YSNGCHLLGNLYYSGQGVSQNTNKALQY 100 (273)
T ss_dssp ------------TTCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT--CHHHHHHHHHHHHHTSSSCCCHHHHHHH
T ss_pred ------------CCCHHHHHHHHHHHHcCCCcCCCHHHHHHHHHHHHHCC--CHHHHHHHHHHHhCCCCcccCHHHHHHH
Confidence 1223455555555555 566666666666655553 45555666666665 6666666666
Q ss_pred HHHHHhhCCCChHHHHHHHHHHHhhhcccccccccchhhhhHHHh----cCCHHHHHHHHHHHHhcCCCCHHHHHHHHHH
Q 012143 223 FQDLILKDQNHPAALINYAALLLCKYGSVLAGAGANTGEGACLDQ----ASAVNVAKECLLAALKADPKAAHIWANLANA 298 (470)
Q Consensus 223 ~~~~l~~~p~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~A~~~~~~~~~~~p~~~~~~~~la~~ 298 (470)
|++++.. +++.++..+|.++. . .+++++|+.+|+++++.. ++.++..+|.+
T Consensus 101 ~~~a~~~--~~~~a~~~lg~~~~---------------------~~~~~~~~~~~A~~~~~~a~~~~--~~~a~~~lg~~ 155 (273)
T 1ouv_A 101 YSKACDL--KYAEGCASLGGIYH---------------------DGKVVTRDFKKAVEYFTKACDLN--DGDGCTILGSL 155 (273)
T ss_dssp HHHHHHT--TCHHHHHHHHHHHH---------------------HCSSSCCCHHHHHHHHHHHHHTT--CHHHHHHHHHH
T ss_pred HHHHHHc--CCccHHHHHHHHHH---------------------cCCCcccCHHHHHHHHHHHHhcC--cHHHHHHHHHH
Confidence 6665554 24555555555544 3 555666666666665543 35555666666
Q ss_pred HHH----cCChhHHHHHHHHHHhcCCCcccHHHHHHHHHHHHhhhccCchHHhhhhHHHHHHHhhcCCCCCCCcHHHHHH
Q 012143 299 YYL----TGDHRSSGKCLEKAAKLEPNCMSTRYAVAVSRIKDAERSQEPTEQLSWAGNEMASILREGDPVQIEPPIAWAG 374 (470)
Q Consensus 299 ~~~----~g~~~~A~~~~~~a~~~~p~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 374 (470)
+.. .+++++|+.+|+++++..+ +.++..
T Consensus 156 ~~~~~~~~~~~~~A~~~~~~a~~~~~------------------------------------------------~~a~~~ 187 (273)
T 1ouv_A 156 YDAGRGTPKDLKKALASYDKACDLKD------------------------------------------------SPGCFN 187 (273)
T ss_dssp HHHTSSSCCCHHHHHHHHHHHHHTTC------------------------------------------------HHHHHH
T ss_pred HHcCCCCCCCHHHHHHHHHHHHHCCC------------------------------------------------HHHHHH
Confidence 665 5666666666666554421 123444
Q ss_pred HHHHHhc----cccHHHHHHHHHHHhcchhhhhHhhHHHHHHH----hccHHHHHHHHHHHHhcCCCcHHHH
Q 012143 375 FAAVQKT----HHEVAAAFETEENELSKMEECAGAGESAFLDQ----ASAVNVAKECLLAALKADPKAAHIW 438 (470)
Q Consensus 375 l~~~~~~----~~~~~~A~~~~~~~~~~~~~~~~~~l~~~~~~----~~~~~~A~~~~~~al~~~p~~~~~~ 438 (470)
+|.++.. .+++++|+..+++.+...+..+++.+|.++.. .+++++|+.+|+++++..|+++..+
T Consensus 188 lg~~~~~g~~~~~~~~~A~~~~~~a~~~~~~~a~~~l~~~~~~g~~~~~~~~~A~~~~~~a~~~~~~~a~~~ 259 (273)
T 1ouv_A 188 AGNMYHHGEGATKNFKEALARYSKACELENGGGCFNLGAMQYNGEGVTRNEKQAIENFKKGCKLGAKGACDI 259 (273)
T ss_dssp HHHHHHHTCSSCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTSSSSCCSTTHHHHHHHHHHHTCHHHHHH
T ss_pred HHHHHHcCCCCCccHHHHHHHHHHHHhCCCHHHHHHHHHHHHcCCCcccCHHHHHHHHHHHHHcCCHHHHHH
Confidence 5555555 56666666666665555555566677777777 7888888888888888887654443
|
| >2vq2_A PILW, putative fimbrial biogenesis and twitching motility protein; secretin, TPR repeat, type IV pilus, bacterail virulence; 1.54A {Neisseria meningitidis} | Back alignment and structure |
|---|
Probab=99.93 E-value=1.7e-23 Score=177.08 Aligned_cols=208 Identities=11% Similarity=0.016 Sum_probs=170.3
Q ss_pred cCccchHHHHHHHHHHHHcCChHHHHHHHHHHhhcCCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCChHHHHHH
Q 012143 161 SDTRQAVVWNTLGLILLKSGRLQSSISVLSSLLAVDPNNCDCIGNLGIAYFQSGDMEQSAKCFQDLILKDQNHPAALINY 240 (470)
Q Consensus 161 ~~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~l 240 (470)
..|.++.++..+|.++...|++++|+..|+++++.+|+++.++..+|.++...|++++|+..+++++..+|.+..++..+
T Consensus 3 ~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~l 82 (225)
T 2vq2_A 3 KANQVSNIKTQLAMEYMRGQDYRQATASIEDALKSDPKNELAWLVRAEIYQYLKVNDKAQESFRQALSIKPDSAEINNNY 82 (225)
T ss_dssp -CCHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHH
T ss_pred CCcccHHHHHHHHHHHHHHhhHHHHHHHHHHHHHhCccchHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCChHHHHHH
Confidence 46888999999999999999999999999999999999999999999999999999999999999999999999999888
Q ss_pred HHHHHhhhcccccccccchhhhhHHHhc-CCHHHHHHHHHHHHh--cCCCCHHHHHHHHHHHHHcCChhHHHHHHHHHHh
Q 012143 241 AALLLCKYGSVLAGAGANTGEGACLDQA-SAVNVAKECLLAALK--ADPKAAHIWANLANAYYLTGDHRSSGKCLEKAAK 317 (470)
Q Consensus 241 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~A~~~~~~~~~--~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~ 317 (470)
+.++. .. |++++|+.+++++++ ..|.+..++..+|.++...|++++|+.+++++++
T Consensus 83 ~~~~~---------------------~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~ 141 (225)
T 2vq2_A 83 GWFLC---------------------GRLNRPAESMAYFDKALADPTYPTPYIANLNKGICSAKQGQFGLAEAYLKRSLA 141 (225)
T ss_dssp HHHHH---------------------TTTCCHHHHHHHHHHHHTSTTCSCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHH---------------------HhcCcHHHHHHHHHHHHcCcCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 88877 68 999999999999999 6677789999999999999999999999999999
Q ss_pred cCCCcccHHHHHHHHHHHHhhhccCchHHhhhhHHHHHHHhhcCCCCCCCcHHHHHHHHHHHhccccHHHHHHHHHHHhc
Q 012143 318 LEPNCMSTRYAVAVSRIKDAERSQEPTEQLSWAGNEMASILREGDPVQIEPPIAWAGFAAVQKTHHEVAAAFETEENELS 397 (470)
Q Consensus 318 ~~p~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~ 397 (470)
..|++.. ++..+|.
T Consensus 142 ~~~~~~~----------------------------------------------~~~~la~-------------------- 155 (225)
T 2vq2_A 142 AQPQFPP----------------------------------------------AFKELAR-------------------- 155 (225)
T ss_dssp HSTTCHH----------------------------------------------HHHHHHH--------------------
T ss_pred hCCCCch----------------------------------------------HHHHHHH--------------------
Confidence 9887542 3333344
Q ss_pred chhhhhHhhHHHHHHHhccHHHHHHHHHHHHhcCC-CcHHHHHHHHHHHHHcCChHHHHHHHHHHHHhhcc
Q 012143 398 KMEECAGAGESAFLDQASAVNVAKECLLAALKADP-KAAHIWANLANAYYLTGDHRSSGKCLEKVLMVYCS 467 (470)
Q Consensus 398 ~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~p-~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~ 467 (470)
++...|++++|+..++++++..| +++..+..++.++...|+.++|..+++.+.+..|.
T Consensus 156 ------------~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~p~ 214 (225)
T 2vq2_A 156 ------------TKMLAGQLGDADYYFKKYQSRVEVLQADDLLLGWKIAKALGNAQAAYEYEAQLQANFPY 214 (225)
T ss_dssp ------------HHHHHTCHHHHHHHHHHHHHHHCSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT
T ss_pred ------------HHHHcCCHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHhcCcHHHHHHHHHHHHHhCCC
Confidence 44455555666666666666666 56666666666666666666666666665555543
|
| >2vq2_A PILW, putative fimbrial biogenesis and twitching motility protein; secretin, TPR repeat, type IV pilus, bacterail virulence; 1.54A {Neisseria meningitidis} | Back alignment and structure |
|---|
Probab=99.93 E-value=8.3e-24 Score=179.07 Aligned_cols=213 Identities=14% Similarity=0.049 Sum_probs=156.6
Q ss_pred CCCChhHHHHHHHHHHHhCChhHHHHHHHHHHHHHhhhhcccchhhhHHHHHHhhhccccccccCCCccccccCcccHHH
Q 012143 71 MPKNAHAHFLLGLMYQRLGQPLKAVSSYEKAEEILLRCEADIARPELLSLVQIHHAQCLLPESSGDNSLDKELEPEELEE 150 (470)
Q Consensus 71 ~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 150 (470)
.|.++.+++.+|.++...|++++|+..|+++++..|... .++..++.++ ...|++++
T Consensus 4 ~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~------------~~~~~l~~~~-----------~~~~~~~~ 60 (225)
T 2vq2_A 4 ANQVSNIKTQLAMEYMRGQDYRQATASIEDALKSDPKNE------------LAWLVRAEIY-----------QYLKVNDK 60 (225)
T ss_dssp CCHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCH------------HHHHHHHHHH-----------HHTTCHHH
T ss_pred CcccHHHHHHHHHHHHHHhhHHHHHHHHHHHHHhCccch------------HHHHHHHHHH-----------HHcCChHH
Confidence 344455555555555555555555555555555443321 1112222221 23344455
Q ss_pred HHHHHHHhhhcCccchHHHHHHHHHHHHc-CChHHHHHHHHHHhh--cCCCChHHHHHHHHHHHHcCCHHHHHHHHHHHH
Q 012143 151 ILSKLKESMQSDTRQAVVWNTLGLILLKS-GRLQSSISVLSSLLA--VDPNNCDCIGNLGIAYFQSGDMEQSAKCFQDLI 227 (470)
Q Consensus 151 A~~~~~~~~~~~p~~~~~~~~l~~~~~~~-~~~~~A~~~~~~a~~--~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~l 227 (470)
|+..+++++..+|.++.++..+|.++... |++++|+..++++++ ..|.+..++..+|.++...|++++|+..+++++
T Consensus 61 A~~~~~~a~~~~~~~~~~~~~l~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~ 140 (225)
T 2vq2_A 61 AQESFRQALSIKPDSAEINNNYGWFLCGRLNRPAESMAYFDKALADPTYPTPYIANLNKGICSAKQGQFGLAEAYLKRSL 140 (225)
T ss_dssp HHHHHHHHHHHCTTCHHHHHHHHHHHHTTTCCHHHHHHHHHHHHTSTTCSCHHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhCCCChHHHHHHHHHHHHhcCcHHHHHHHHHHHHcCcCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 55555555555677778888899999999 999999999999988 566667888999999999999999999999999
Q ss_pred hhCCCChHHHHHHHHHHHhhhcccccccccchhhhhHHHhcCCHHHHHHHHHHHHhcCC-CCHHHHHHHHHHHHHcCChh
Q 012143 228 LKDQNHPAALINYAALLLCKYGSVLAGAGANTGEGACLDQASAVNVAKECLLAALKADP-KAAHIWANLANAYYLTGDHR 306 (470)
Q Consensus 228 ~~~p~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~p-~~~~~~~~la~~~~~~g~~~ 306 (470)
+..|.++.++..++.++. ..|++++|+.+++++++..| .++..+..++.++...|+++
T Consensus 141 ~~~~~~~~~~~~la~~~~---------------------~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 199 (225)
T 2vq2_A 141 AAQPQFPPAFKELARTKM---------------------LAGQLGDADYYFKKYQSRVEVLQADDLLLGWKIAKALGNAQ 199 (225)
T ss_dssp HHSTTCHHHHHHHHHHHH---------------------HHTCHHHHHHHHHHHHHHHCSCCHHHHHHHHHHHHHTTCHH
T ss_pred HhCCCCchHHHHHHHHHH---------------------HcCCHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHhcCcHH
Confidence 999988888888887776 68899999999999999988 88888888888889999999
Q ss_pred HHHHHHHHHHhcCCCcccHHH
Q 012143 307 SSGKCLEKAAKLEPNCMSTRY 327 (470)
Q Consensus 307 ~A~~~~~~a~~~~p~~~~~~~ 327 (470)
+|..+++.+....|+++....
T Consensus 200 ~a~~~~~~~~~~~p~~~~~~~ 220 (225)
T 2vq2_A 200 AAYEYEAQLQANFPYSEELQT 220 (225)
T ss_dssp HHHHHHHHHHHHCTTCHHHHH
T ss_pred HHHHHHHHHHHhCCCCHHHHH
Confidence 999999888888888776544
|
| >3ro2_A PINS homolog, G-protein-signaling modulator 2; TPR repeat, protein-protein interaction, protein-binding, PR binding; 2.30A {Mus musculus} | Back alignment and structure |
|---|
Probab=99.93 E-value=3e-25 Score=200.11 Aligned_cols=274 Identities=18% Similarity=0.191 Sum_probs=224.6
Q ss_pred hhhhhhhhhhhhhHHHHHHHHHHHHhcCCCCc----chhhhcccchhhhhcChhhHHHHHHHHHHh------CCCChhHH
Q 012143 9 EVEGKKINKLGKCRSRISSKMDSALEFGVDAD----GDQSGLGTSSSSREEKVSSLKTGLVHVARK------MPKNAHAH 78 (470)
Q Consensus 9 ~~~~~~~~~~g~~~~a~~~~~~~~l~~~p~~~----~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~------~p~~~~~~ 78 (470)
-..|..+...|++++|+ ..++++++..|++. ..+..+|.+ +...|++++|...+++++.. .|..+.++
T Consensus 9 ~~~g~~~~~~g~~~~A~-~~~~~al~~~~~~~~~~~~~~~~l~~~-~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~ 86 (338)
T 3ro2_A 9 ALEGERLCKSGDCRAGV-SFFEAAVQVGTEDLKTLSAIYSQLGNA-YFYLHDYAKALEYHHHDLTLARTIGDQLGEAKAS 86 (338)
T ss_dssp HHHHHHHHHTTCHHHHH-HHHHHHHHHCCSCHHHHHHHHHHHHHH-HHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHH
T ss_pred HHHHHHHHHhccHHHHH-HHHHHHHhhCcccHHHHHHHHHHHHHH-HHHcCCHHHHHHHHHHHHHHhhcccccHHHHHHH
Confidence 34688899999999999 99999999999984 578899999 99999999999999999876 45567799
Q ss_pred HHHHHHHHHhCChhHHHHHHHHHHHHHhhhhcccchhhhHHHHHHhhhccccccccCCCccccccCccc-----------
Q 012143 79 FLLGLMYQRLGQPLKAVSSYEKAEEILLRCEADIARPELLSLVQIHHAQCLLPESSGDNSLDKELEPEE----------- 147 (470)
Q Consensus 79 ~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----------- 147 (470)
..+|.++...|++++|+..++++++..+.... ......++..++.++ ...|+
T Consensus 87 ~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~------~~~~~~~~~~l~~~~-----------~~~~~~~~~~~~~~~~ 149 (338)
T 3ro2_A 87 GNLGNTLKVLGNFDEAIVCCQRHLDISRELND------KVGEARALYNLGNVY-----------HAKGKSFGCPGPQDTG 149 (338)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTC------HHHHHHHHHHHHHHH-----------HHHHHTSSSSSCC---
T ss_pred HHHHHHHHHccCHHHHHHHHHHHHHHHHHhcC------chHHHHHHHHHHHHH-----------HHcCcccccchhhhhh
Confidence 99999999999999999999999998766422 122234445555544 34555
Q ss_pred ---------HHHHHHHHHHhhhc------CccchHHHHHHHHHHHHcCChHHHHHHHHHHhhcCCCCh------HHHHHH
Q 012143 148 ---------LEEILSKLKESMQS------DTRQAVVWNTLGLILLKSGRLQSSISVLSSLLAVDPNNC------DCIGNL 206 (470)
Q Consensus 148 ---------~~~A~~~~~~~~~~------~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~------~~~~~l 206 (470)
+++|+..+++++.. .|....++..+|.++...|++++|+.+++++++..|... .++..+
T Consensus 150 ~~~~~a~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~l 229 (338)
T 3ro2_A 150 EFPEDVRNALQAAVDLYEENLSLVTALGDRAAQGRAFGNLGNTHYLLGNFRDAVIAHEQRLLIAKEFGDKAAERRAYSNL 229 (338)
T ss_dssp -CCHHHHHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHH
T ss_pred hhhhhHHHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHhcCChHHHHHHHHHH
Confidence 89999999998875 344566899999999999999999999999998765433 389999
Q ss_pred HHHHHHcCCHHHHHHHHHHHHhhCCCC------hHHHHHHHHHHHhhhcccccccccchhhhhHHHhcCCHHHHHHHHHH
Q 012143 207 GIAYFQSGDMEQSAKCFQDLILKDQNH------PAALINYAALLLCKYGSVLAGAGANTGEGACLDQASAVNVAKECLLA 280 (470)
Q Consensus 207 a~~~~~~g~~~~A~~~~~~~l~~~p~~------~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~ 280 (470)
|.++...|++++|+..+++++...|.. ..++..+ |.++...|++++|+.++++
T Consensus 230 ~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l---------------------a~~~~~~g~~~~A~~~~~~ 288 (338)
T 3ro2_A 230 GNAYIFLGEFETASEYYKKTLLLARQLKDRAVEAQSCYSL---------------------GNTYTLLQDYEKAIDYHLK 288 (338)
T ss_dssp HHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHH---------------------HHHHHHTTCHHHHHHHHHH
T ss_pred HHHHHHcCCHHHHHHHHHHHHHHHHhhcchhHHHHHHHHH---------------------HHHHHHhcCHHHHHHHHHH
Confidence 999999999999999999999886654 3333444 4555589999999999999
Q ss_pred HHhcCCCC------HHHHHHHHHHHHHcCChhHHHHHHHHHHhcCCCc
Q 012143 281 ALKADPKA------AHIWANLANAYYLTGDHRSSGKCLEKAAKLEPNC 322 (470)
Q Consensus 281 ~~~~~p~~------~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~p~~ 322 (470)
++...+.. ..++..+|.++...|++++|..++++++.+.+..
T Consensus 289 a~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~ 336 (338)
T 3ro2_A 289 HLAIAQELKDRIGEGRACWSLGNAYTALGNHDQAMHFAEKHLEISREV 336 (338)
T ss_dssp HHHHHHHHTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHC----
T ss_pred HHHHHHhcCCcHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHhh
Confidence 99876542 5588999999999999999999999999987753
|
| >4abn_A Tetratricopeptide repeat protein 5; P53 cofactor, stress-response, DNA repair, gene regulation; 2.05A {Mus musculus} | Back alignment and structure |
|---|
Probab=99.93 E-value=1.4e-24 Score=204.08 Aligned_cols=219 Identities=15% Similarity=0.065 Sum_probs=196.4
Q ss_pred hhhcChhhHHHHHHHHHHhCCCChhHHHHHHHHHHHhCCh-hHHHHHHHHHHHHHhhhhcccchhhhHHHHHHhhhcccc
Q 012143 52 SREEKVSSLKTGLVHVARKMPKNAHAHFLLGLMYQRLGQP-LKAVSSYEKAEEILLRCEADIARPELLSLVQIHHAQCLL 130 (470)
Q Consensus 52 ~~~~~~~~A~~~~~~~l~~~p~~~~~~~~l~~~~~~~g~~-~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 130 (470)
...+.++++...+.+.....|.++.+++.+|.++...|++ ++|+..|+++++.+|.. ..++..+|.+
T Consensus 79 ~~~~~~~~al~~l~~~~~~~~~~a~~~~~lg~~~~~~g~~~~~A~~~~~~al~~~p~~------------~~a~~~lg~~ 146 (474)
T 4abn_A 79 DVQEEMEKTLQQMEEVLGSAQVEAQALMLKGKALNVTPDYSPEAEVLLSKAVKLEPEL------------VEAWNQLGEV 146 (474)
T ss_dssp HHHHHHHHHHHHHHHHHTTCCCCHHHHHHHHHHHTSSSSCCHHHHHHHHHHHHHCTTC------------HHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHhccCchhHHHHHHHHHHHHhccccHHHHHHHHHHHHhhCCCC------------HHHHHHHHHH
Confidence 3455678888899988888999999999999999999999 99999999999987663 2344455554
Q ss_pred ccccCCCccccccCcccHHHHHHHHHHhhhcCccchHHHHHHHHHHHHc---------CChHHHHHHHHHHhhcCCCChH
Q 012143 131 PESSGDNSLDKELEPEELEEILSKLKESMQSDTRQAVVWNTLGLILLKS---------GRLQSSISVLSSLLAVDPNNCD 201 (470)
Q Consensus 131 ~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~---------~~~~~A~~~~~~a~~~~~~~~~ 201 (470)
+ ...|++++|+..|+++++.+|+ +.++..+|.++... |++++|+..|+++++++|+++.
T Consensus 147 ~-----------~~~g~~~~A~~~~~~al~~~p~-~~~~~~lg~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~p~~~~ 214 (474)
T 4abn_A 147 Y-----------WKKGDVTSAHTCFSGALTHCKN-KVSLQNLSMVLRQLQTDSGDEHSRHVMDSVRQAKLAVQMDVLDGR 214 (474)
T ss_dssp H-----------HHHTCHHHHHHHHHHHHTTCCC-HHHHHHHHHHHTTCCCSCHHHHHHHHHHHHHHHHHHHHHCTTCHH
T ss_pred H-----------HHcCCHHHHHHHHHHHHhhCCC-HHHHHHHHHHHHHhccCChhhhhhhHHHHHHHHHHHHHhCCCCHH
Confidence 3 4566779999999999999999 69999999999999 9999999999999999999999
Q ss_pred HHHHHHHHHHHc--------CCHHHHHHHHHHHHhhCC---CChHHHHHHHHHHHhhhcccccccccchhhhhHHHhcCC
Q 012143 202 CIGNLGIAYFQS--------GDMEQSAKCFQDLILKDQ---NHPAALINYAALLLCKYGSVLAGAGANTGEGACLDQASA 270 (470)
Q Consensus 202 ~~~~la~~~~~~--------g~~~~A~~~~~~~l~~~p---~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 270 (470)
++..+|.++... |++++|+..|+++++++| .++.++..+|.++. ..|+
T Consensus 215 ~~~~lg~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~lg~~~~---------------------~~g~ 273 (474)
T 4abn_A 215 SWYILGNAYLSLYFNTGQNPKISQQALSAYAQAEKVDRKASSNPDLHLNRATLHK---------------------YEES 273 (474)
T ss_dssp HHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHCGGGGGCHHHHHHHHHHHH---------------------HTTC
T ss_pred HHHHHHHHHHHHHHhhccccchHHHHHHHHHHHHHhCCCcccCHHHHHHHHHHHH---------------------HcCC
Confidence 999999999999 999999999999999999 99999999998888 7999
Q ss_pred HHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCChhHHHHHHHHH
Q 012143 271 VNVAKECLLAALKADPKAAHIWANLANAYYLTGDHRSSGKCLEKA 315 (470)
Q Consensus 271 ~~~A~~~~~~~~~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~a 315 (470)
+++|+..|+++++++|+++.++..++.++...|++++|+..+.+.
T Consensus 274 ~~~A~~~~~~al~l~p~~~~a~~~l~~~~~~lg~~~eAi~~~~~~ 318 (474)
T 4abn_A 274 YGEALEGFSQAAALDPAWPEPQQREQQLLEFLSRLTSLLESKGKT 318 (474)
T ss_dssp HHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHHHHHHHHHTTTC
T ss_pred HHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHHHHhccc
Confidence 999999999999999999999999999999999999999877543
|
| >2ond_A Cleavage stimulation factor 77 kDa subunit; HAT domain, structural protein; 2.80A {Mus musculus} SCOP: a.118.8.7 | Back alignment and structure |
|---|
Probab=99.92 E-value=4e-23 Score=183.48 Aligned_cols=219 Identities=11% Similarity=0.060 Sum_probs=179.1
Q ss_pred HHHHHHHHHhhhcCccchHHHHHHHHHHHH-------cCCh-------HHHHHHHHHHhh-cCCCChHHHHHHHHHHHHc
Q 012143 149 EEILSKLKESMQSDTRQAVVWNTLGLILLK-------SGRL-------QSSISVLSSLLA-VDPNNCDCIGNLGIAYFQS 213 (470)
Q Consensus 149 ~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~-------~~~~-------~~A~~~~~~a~~-~~~~~~~~~~~la~~~~~~ 213 (470)
++|+..|++++..+|.++.+|+.+|..+.. .|++ ++|+..|+++++ ++|++..+|..+|.++...
T Consensus 33 ~~a~~~~~~al~~~p~~~~~w~~~~~~~~~~~~~l~~~g~~~~~~~~~~~A~~~~~rAl~~~~p~~~~~~~~~~~~~~~~ 112 (308)
T 2ond_A 33 KRVMFAYEQCLLVLGHHPDIWYEAAQYLEQSSKLLAEKGDMNNAKLFSDEAANIYERAISTLLKKNMLLYFAYADYEESR 112 (308)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHTSCCHHHHHHHHHHHHHHHHHHTTTTTTCHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHcCCCHHHHHHHHHHHHHhchhhhhccchhhcccchHHHHHHHHHHHHHhCcccHHHHHHHHHHHHhc
Confidence 789999999999999999999999999874 5886 999999999999 7999999999999999999
Q ss_pred CCHHHHHHHHHHHHhhCCCChH-HHHHHHHHHHhhhcccccccccchhhhhHHHhcCCHHHHHHHHHHHHhcCCCCHHHH
Q 012143 214 GDMEQSAKCFQDLILKDQNHPA-ALINYAALLLCKYGSVLAGAGANTGEGACLDQASAVNVAKECLLAALKADPKAAHIW 292 (470)
Q Consensus 214 g~~~~A~~~~~~~l~~~p~~~~-~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~ 292 (470)
|++++|+..|+++++..|.++. +|..++.++. +.|++++|+..|+++++..|....+|
T Consensus 113 ~~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~---------------------~~~~~~~A~~~~~~a~~~~p~~~~~~ 171 (308)
T 2ond_A 113 MKYEKVHSIYNRLLAIEDIDPTLVYIQYMKFAR---------------------RAEGIKSGRMIFKKAREDARTRHHVY 171 (308)
T ss_dssp TCHHHHHHHHHHHHTSSSSCTHHHHHHHHHHHH---------------------HHHCHHHHHHHHHHHHTSTTCCTHHH
T ss_pred CCHHHHHHHHHHHHhccccCccHHHHHHHHHHH---------------------HhcCHHHHHHHHHHHHhcCCCCHHHH
Confidence 9999999999999999999886 8888888776 68999999999999999999998888
Q ss_pred HHHHHHHHH-cCChhHHHHHHHHHHhcCCCcccHHHHHHHHHHHHhhhccCchHHhhhhHHHHHHHhhcCCCCCCCcHHH
Q 012143 293 ANLANAYYL-TGDHRSSGKCLEKAAKLEPNCMSTRYAVAVSRIKDAERSQEPTEQLSWAGNEMASILREGDPVQIEPPIA 371 (470)
Q Consensus 293 ~~la~~~~~-~g~~~~A~~~~~~a~~~~p~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 371 (470)
...+.+... .|++++|+..|+++++.+|+++ .+
T Consensus 172 ~~~a~~~~~~~~~~~~A~~~~~~al~~~p~~~----------------------------------------------~~ 205 (308)
T 2ond_A 172 VTAALMEYYCSKDKSVAFKIFELGLKKYGDIP----------------------------------------------EY 205 (308)
T ss_dssp HHHHHHHHHTSCCHHHHHHHHHHHHHHHTTCH----------------------------------------------HH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcH----------------------------------------------HH
Confidence 877766544 7999999999999999998854 35
Q ss_pred HHHHHHHHhccccHHHHHHHHHHHhcc------hhhhhHhhHHHHHHHhccHHHHHHHHHHHHhcCCCc
Q 012143 372 WAGFAAVQKTHHEVAAAFETEENELSK------MEECAGAGESAFLDQASAVNVAKECLLAALKADPKA 434 (470)
Q Consensus 372 ~~~l~~~~~~~~~~~~A~~~~~~~~~~------~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~p~~ 434 (470)
|..++.++...|++++|...|.+++.. .....|..++..+...|++++|...++++++..|++
T Consensus 206 ~~~~~~~~~~~g~~~~A~~~~~~al~~~~l~p~~~~~l~~~~~~~~~~~g~~~~a~~~~~~a~~~~p~~ 274 (308)
T 2ond_A 206 VLAYIDYLSHLNEDNNTRVLFERVLTSGSLPPEKSGEIWARFLAFESNIGDLASILKVEKRRFTAFREE 274 (308)
T ss_dssp HHHHHHHHHTTCCHHHHHHHHHHHHHSSSSCGGGCHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHTTTT
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHhccCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHcccc
Confidence 556666666666666666666665441 122345555666666666666666666666666654
|
| >4i17_A Hypothetical protein; TPR repeats protein, structural genomics, joint center for S genomics, JCSG, protein structure initiative; HET: MSE; 1.83A {Bacteroides fragilis} | Back alignment and structure |
|---|
Probab=99.92 E-value=5.7e-23 Score=174.32 Aligned_cols=213 Identities=15% Similarity=0.086 Sum_probs=174.8
Q ss_pred ccchHHHHHHHHHHHHcCChHHHHHHHHHHhhcCC-CChHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCChHHHHHHH
Q 012143 163 TRQAVVWNTLGLILLKSGRLQSSISVLSSLLAVDP-NNCDCIGNLGIAYFQSGDMEQSAKCFQDLILKDQNHPAALINYA 241 (470)
Q Consensus 163 p~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~-~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~l~ 241 (470)
+.++..++.+|.++...|++++|+..|+++++.+| .+..+++.+|.++...|++++|+..|++++..+|++..++..+|
T Consensus 4 ~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~ 83 (228)
T 4i17_A 4 TTDPNQLKNEGNDALNAKNYAVAFEKYSEYLKLTNNQDSVTAYNCGVCADNIKKYKEAADYFDIAIKKNYNLANAYIGKS 83 (228)
T ss_dssp CCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTTTCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCSHHHHHHHHH
T ss_pred ccCHHHHHHHHHHHHHccCHHHHHHHHHHHHhccCCCCcHHHHHHHHHHHHhhcHHHHHHHHHHHHHhCcchHHHHHHHH
Confidence 45678999999999999999999999999999999 88999999999999999999999999999999999999999998
Q ss_pred HHHHhhhcccccccccchhhhhHHHhcCCHHHHHHHHHHHHhcCCCCH-------HHHHHHHHHHHHcCChhHHHHHHHH
Q 012143 242 ALLLCKYGSVLAGAGANTGEGACLDQASAVNVAKECLLAALKADPKAA-------HIWANLANAYYLTGDHRSSGKCLEK 314 (470)
Q Consensus 242 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~p~~~-------~~~~~la~~~~~~g~~~~A~~~~~~ 314 (470)
.++. ..|++++|+..|+++++.+|+++ .++..+|.++...|++++|+..|++
T Consensus 84 ~~~~---------------------~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~ 142 (228)
T 4i17_A 84 AAYR---------------------DMKNNQEYIATLTEGIKAVPGNATIEKLYAIYYLKEGQKFQQAGNIEKAEENYKH 142 (228)
T ss_dssp HHHH---------------------HTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred HHHH---------------------HcccHHHHHHHHHHHHHHCCCcHHHHHHHHHHHHHHhHHHHHhccHHHHHHHHHH
Confidence 8887 79999999999999999999998 6699999999999999999999999
Q ss_pred HHhcCCC--cccHHHHHHHHHHHHhhhccCchHHhhhhHHHHHHHhhcCCCCCCCcHHHHHHHHHHHhccccHHHHHHHH
Q 012143 315 AAKLEPN--CMSTRYAVAVSRIKDAERSQEPTEQLSWAGNEMASILREGDPVQIEPPIAWAGFAAVQKTHHEVAAAFETE 392 (470)
Q Consensus 315 a~~~~p~--~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~ 392 (470)
+++.+|+ +..++..++.... ..|+. .+
T Consensus 143 al~~~p~~~~~~~~~~l~~~~~----------------------------------------------~~~~~-----~~ 171 (228)
T 4i17_A 143 ATDVTSKKWKTDALYSLGVLFY----------------------------------------------NNGAD-----VL 171 (228)
T ss_dssp HTTSSCHHHHHHHHHHHHHHHH----------------------------------------------HHHHH-----HH
T ss_pred HHhcCCCcccHHHHHHHHHHHH----------------------------------------------HHHHH-----HH
Confidence 9999998 7666665554332 22221 00
Q ss_pred HHHhcchhhhhHhhHHHHHHHhccHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHH
Q 012143 393 ENELSKMEECAGAGESAFLDQASAVNVAKECLLAALKADPKAAHIWANLANAYYL 447 (470)
Q Consensus 393 ~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~ 447 (470)
.+.....+.......+......+.+++|+.+|+++++++|+++.+...++.+...
T Consensus 172 ~~a~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~l~p~~~~~~~~l~~i~~~ 226 (228)
T 4i17_A 172 RKATPLASSNKEKYASEKAKADAAFKKAVDYLGEAVTLSPNRTEIKQMQDQVKAM 226 (228)
T ss_dssp HHHGGGTTTCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHTT
T ss_pred HHHHhcccCCHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCHHHHHHHHHHHHh
Confidence 1111100001111122344556779999999999999999999999998887543
|
| >3ulq_A Response regulator aspartate phosphatase F; tetratricopeptide repeat, response regulator helix-turn-HELX binding, 3-helix bundle; 2.30A {Bacillus subtilis} | Back alignment and structure |
|---|
Probab=99.92 E-value=3.8e-23 Score=189.96 Aligned_cols=245 Identities=9% Similarity=-0.039 Sum_probs=196.2
Q ss_pred HHHHHHHHHHHcCChHHHHHHHHHHhhc---CCC---ChHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCChHHHHHHH
Q 012143 168 VWNTLGLILLKSGRLQSSISVLSSLLAV---DPN---NCDCIGNLGIAYFQSGDMEQSAKCFQDLILKDQNHPAALINYA 241 (470)
Q Consensus 168 ~~~~l~~~~~~~~~~~~A~~~~~~a~~~---~~~---~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~l~ 241 (470)
.++.+|.++...|++++|+.+|++++.+ .++ .+.++..+|.++...|++++|+..+++++.+.+.........+
T Consensus 105 ~~~~~g~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~lg~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~ 184 (383)
T 3ulq_A 105 FNFFRGMYELDQREYLSAIKFFKKAESKLIFVKDRIEKAEFFFKMSESYYYMKQTYFSMDYARQAYEIYKEHEAYNIRLL 184 (383)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHTTGGGCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTCSTTHHHHH
T ss_pred HHHHHHHHHHHhcCHHHHHHHHHHHHHHHhhCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhCccchHHHH
Confidence 3455999999999999999999999987 232 4578999999999999999999999999998665543222222
Q ss_pred HHHHhhhcccccccccchhhhhHHHhcCCHHHHHHHHHHHHhcCCCC------HHHHHHHHHHHHHcCChhHHHHHHHHH
Q 012143 242 ALLLCKYGSVLAGAGANTGEGACLDQASAVNVAKECLLAALKADPKA------AHIWANLANAYYLTGDHRSSGKCLEKA 315 (470)
Q Consensus 242 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~p~~------~~~~~~la~~~~~~g~~~~A~~~~~~a 315 (470)
.++. .+|.++...|++++|+.+|++++++.|.. ..++.++|.+|..+|++++|+.+|+++
T Consensus 185 ~~~~--------------~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~lg~~y~~~g~~~~A~~~~~~a 250 (383)
T 3ulq_A 185 QCHS--------------LFATNFLDLKQYEDAISHFQKAYSMAEAEKQPQLMGRTLYNIGLCKNSQSQYEDAIPYFKRA 250 (383)
T ss_dssp HHHH--------------HHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred HHHH--------------HHHHHHHHhcCHHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHCCCHHHHHHHHHHH
Confidence 2322 24566668999999999999999885543 358999999999999999999999999
Q ss_pred HhcCCCcccHHHHHHHHHHHHhhhccCchHHhhhhHHHHHHHhhcCCCCCCCcHHHHHHHHHHHhccccHHHHHHHHHHH
Q 012143 316 AKLEPNCMSTRYAVAVSRIKDAERSQEPTEQLSWAGNEMASILREGDPVQIEPPIAWAGFAAVQKTHHEVAAAFETEENE 395 (470)
Q Consensus 316 ~~~~p~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~ 395 (470)
+.+.+.... .+..+.++..+|.++...|++++|+..+.++
T Consensus 251 l~~~~~~~~----------------------------------------~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a 290 (383)
T 3ulq_A 251 IAVFEESNI----------------------------------------LPSLPQAYFLITQIHYKLGKIDKAHEYHSKG 290 (383)
T ss_dssp HHHHHHTTC----------------------------------------GGGHHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred HHHHHhhcc----------------------------------------chhHHHHHHHHHHHHHHCCCHHHHHHHHHHH
Confidence 986332110 0122457889999999999999999999996
Q ss_pred hcch-------hhhhHhhHHHHHHHhcc---HHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHcCChHHHHHHHHHHHHhh
Q 012143 396 LSKM-------EECAGAGESAFLDQASA---VNVAKECLLAALKADPKAAHIWANLANAYYLTGDHRSSGKCLEKVLMVY 465 (470)
Q Consensus 396 ~~~~-------~~~~~~~l~~~~~~~~~---~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~ 465 (470)
+.-. ....+..+|.++...|+ +++|+..+++. ...|....++..+|.+|...|++++|..+|++++++.
T Consensus 291 l~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~al~~~~~~-~~~~~~~~~~~~la~~y~~~g~~~~A~~~~~~al~~~ 369 (383)
T 3ulq_A 291 MAYSQKAGDVIYLSEFEFLKSLYLSGPDEEAIQGFFDFLESK-MLYADLEDFAIDVAKYYHERKNFQKASAYFLKVEQVR 369 (383)
T ss_dssp HHHHHHHTCHHHHHHHHHHHHHHTSSCCHHHHHHHHHHHHHT-TCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHH
T ss_pred HHHHHHcCCHHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHC-cCHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHH
Confidence 6522 12235678999999998 88899988887 4445567889999999999999999999999999987
Q ss_pred cc
Q 012143 466 CS 467 (470)
Q Consensus 466 ~~ 467 (470)
.+
T Consensus 370 ~~ 371 (383)
T 3ulq_A 370 QL 371 (383)
T ss_dssp TS
T ss_pred HH
Confidence 54
|
| >4gyw_A UDP-N-acetylglucosamine--peptide N- acetylglucosaminyltransferase 110 kDa subunit...; GT-B, glycosyltransferase, glcnacylation, transferase-peptid; HET: UDP NAG; 1.70A {Homo sapiens} PDB: 3pe3_A* 3pe4_A* 4ay5_A* 4ay6_A* 3tax_A* 4gyy_A* 4gz3_A* 4gz5_A* 4gz6_A* | Back alignment and structure |
|---|
Probab=99.92 E-value=7.2e-24 Score=206.56 Aligned_cols=174 Identities=21% Similarity=0.286 Sum_probs=160.1
Q ss_pred hCCCChhHHHHHHHHHHHhCChhHHHHHHHHHHHHHhhhhcccchhhhHHHHHHhhhccccccccCCCccccccCcccHH
Q 012143 70 KMPKNAHAHFLLGLMYQRLGQPLKAVSSYEKAEEILLRCEADIARPELLSLVQIHHAQCLLPESSGDNSLDKELEPEELE 149 (470)
Q Consensus 70 ~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 149 (470)
..|++++++..+|.++..+|++++|+..|++++++
T Consensus 4 s~P~~a~al~nLG~~~~~~G~~~eAi~~~~kAl~l--------------------------------------------- 38 (723)
T 4gyw_A 4 SCPTHADSLNNLANIKREQGNIEEAVRLYRKALEV--------------------------------------------- 38 (723)
T ss_dssp --CHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH---------------------------------------------
T ss_pred CCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh---------------------------------------------
Confidence 46888899999999999999888888888888765
Q ss_pred HHHHHHHHhhhcCccchHHHHHHHHHHHHcCChHHHHHHHHHHhhcCCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHhh
Q 012143 150 EILSKLKESMQSDTRQAVVWNTLGLILLKSGRLQSSISVLSSLLAVDPNNCDCIGNLGIAYFQSGDMEQSAKCFQDLILK 229 (470)
Q Consensus 150 ~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~ 229 (470)
+|+++.++.++|.++..+|++++|+..|+++++++|+++.++.++|.++..+|++++|++.|++++++
T Consensus 39 ------------~P~~~~a~~nLg~~l~~~g~~~eA~~~~~~Al~l~P~~~~a~~nLg~~l~~~g~~~~A~~~~~kAl~l 106 (723)
T 4gyw_A 39 ------------FPEFAAAHSNLASVLQQQGKLQEALMHYKEAIRISPTFADAYSNMGNTLKEMQDVQGALQCYTRAIQI 106 (723)
T ss_dssp ------------CSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred ------------CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence 57778899999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCChHHHHHHHHHHHhhhcccccccccchhhhhHHHhcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCChhHHH
Q 012143 230 DQNHPAALINYAALLLCKYGSVLAGAGANTGEGACLDQASAVNVAKECLLAALKADPKAAHIWANLANAYYLTGDHRSSG 309 (470)
Q Consensus 230 ~p~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~la~~~~~~g~~~~A~ 309 (470)
+|++..++.++|.++. ..|++++|+..|+++++++|+++.++.++|.++..+|++++|.
T Consensus 107 ~P~~~~a~~~Lg~~~~---------------------~~g~~~eAi~~~~~Al~l~P~~~~a~~~L~~~l~~~g~~~~A~ 165 (723)
T 4gyw_A 107 NPAFADAHSNLASIHK---------------------DSGNIPEAIASYRTALKLKPDFPDAYCNLAHCLQIVCDWTDYD 165 (723)
T ss_dssp CTTCHHHHHHHHHHHH---------------------HTTCHHHHHHHHHHHHHHCSCCHHHHHHHHHHHHHTTCCTTHH
T ss_pred CCCCHHHHHHHHHHHH---------------------HcCCHHHHHHHHHHHHHhCCCChHHHhhhhhHHHhcccHHHHH
Confidence 9999999999998887 7999999999999999999999999999999999999999999
Q ss_pred HHHHHHHhcCCC
Q 012143 310 KCLEKAAKLEPN 321 (470)
Q Consensus 310 ~~~~~a~~~~p~ 321 (470)
+.+++++++.|+
T Consensus 166 ~~~~kal~l~~~ 177 (723)
T 4gyw_A 166 ERMKKLVSIVAD 177 (723)
T ss_dssp HHHHHHHHHHHH
T ss_pred HHHHHHHHhChh
Confidence 999999987654
|
| >4i17_A Hypothetical protein; TPR repeats protein, structural genomics, joint center for S genomics, JCSG, protein structure initiative; HET: MSE; 1.83A {Bacteroides fragilis} | Back alignment and structure |
|---|
Probab=99.92 E-value=5.3e-23 Score=174.49 Aligned_cols=190 Identities=15% Similarity=0.103 Sum_probs=167.9
Q ss_pred CCCChhHHHHHHHHHHHhCChhHHHHHHHHHHHHHhhhhcccchhhhHHHHHHhhhccccccccCCCccccccCcccHHH
Q 012143 71 MPKNAHAHFLLGLMYQRLGQPLKAVSSYEKAEEILLRCEADIARPELLSLVQIHHAQCLLPESSGDNSLDKELEPEELEE 150 (470)
Q Consensus 71 ~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 150 (470)
.|.++.+++.+|.++...|++++|+..|+++++..|
T Consensus 3 ~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~~-------------------------------------------- 38 (228)
T 4i17_A 3 QTTDPNQLKNEGNDALNAKNYAVAFEKYSEYLKLTN-------------------------------------------- 38 (228)
T ss_dssp -CCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTT--------------------------------------------
T ss_pred cccCHHHHHHHHHHHHHccCHHHHHHHHHHHHhccC--------------------------------------------
Confidence 356778899999999999999999999988887632
Q ss_pred HHHHHHHhhhcCccchHHHHHHHHHHHHcCChHHHHHHHHHHhhcCCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC
Q 012143 151 ILSKLKESMQSDTRQAVVWNTLGLILLKSGRLQSSISVLSSLLAVDPNNCDCIGNLGIAYFQSGDMEQSAKCFQDLILKD 230 (470)
Q Consensus 151 A~~~~~~~~~~~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~ 230 (470)
|.+..+++.+|.++...|++++|+..|+++++.+|+++.++..+|.++..+|++++|+..|+++++.+
T Consensus 39 ------------~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~ 106 (228)
T 4i17_A 39 ------------NQDSVTAYNCGVCADNIKKYKEAADYFDIAIKKNYNLANAYIGKSAAYRDMKNNQEYIATLTEGIKAV 106 (228)
T ss_dssp ------------TCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCSHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS
T ss_pred ------------CCCcHHHHHHHHHHHHhhcHHHHHHHHHHHHHhCcchHHHHHHHHHHHHHcccHHHHHHHHHHHHHHC
Confidence 14557888899999999999999999999999999999999999999999999999999999999999
Q ss_pred CCChHHHHHHHHHHHhhhcccccccccchhhhhHHHhcCCHHHHHHHHHHHHhcCCC--CHHHHHHHHHHHHHcCCh---
Q 012143 231 QNHPAALINYAALLLCKYGSVLAGAGANTGEGACLDQASAVNVAKECLLAALKADPK--AAHIWANLANAYYLTGDH--- 305 (470)
Q Consensus 231 p~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~p~--~~~~~~~la~~~~~~g~~--- 305 (470)
|+++..+..++.++.. +|.++...|++++|+..|+++++.+|+ ++.++..+|.++...|+.
T Consensus 107 p~~~~~~~~~~~~~~~--------------~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~l~~~~~~~~~~~~~ 172 (228)
T 4i17_A 107 PGNATIEKLYAIYYLK--------------EGQKFQQAGNIEKAEENYKHATDVTSKKWKTDALYSLGVLFYNNGADVLR 172 (228)
T ss_dssp TTCHHHHHHHHHHHHH--------------HHHHHHHTTCHHHHHHHHHHHTTSSCHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CCcHHHHHHHHHHHHH--------------HhHHHHHhccHHHHHHHHHHHHhcCCCcccHHHHHHHHHHHHHHHHHHHH
Confidence 9999776666655543 566777999999999999999999999 999999999999999998
Q ss_pred ------------------------hHHHHHHHHHHhcCCCcccHHHHHH
Q 012143 306 ------------------------RSSGKCLEKAAKLEPNCMSTRYAVA 330 (470)
Q Consensus 306 ------------------------~~A~~~~~~a~~~~p~~~~~~~~l~ 330 (470)
++|+.+|+++++++|++..+...++
T Consensus 173 ~a~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~l~p~~~~~~~~l~ 221 (228)
T 4i17_A 173 KATPLASSNKEKYASEKAKADAAFKKAVDYLGEAVTLSPNRTEIKQMQD 221 (228)
T ss_dssp HHGGGTTTCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHH
T ss_pred HHHhcccCCHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCHHHHHHHH
Confidence 9999999999999999987666543
|
| >2ond_A Cleavage stimulation factor 77 kDa subunit; HAT domain, structural protein; 2.80A {Mus musculus} SCOP: a.118.8.7 | Back alignment and structure |
|---|
Probab=99.92 E-value=7.7e-23 Score=181.67 Aligned_cols=157 Identities=14% Similarity=0.113 Sum_probs=134.0
Q ss_pred cHHHHHHHHHHhhhcCccchH-HHHHHHHHHHHcCChHHHHHHHHHHhhcCCCChHHHHHHHHHHHH-cCCHHHHHHHHH
Q 012143 147 ELEEILSKLKESMQSDTRQAV-VWNTLGLILLKSGRLQSSISVLSSLLAVDPNNCDCIGNLGIAYFQ-SGDMEQSAKCFQ 224 (470)
Q Consensus 147 ~~~~A~~~~~~~~~~~p~~~~-~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~la~~~~~-~g~~~~A~~~~~ 224 (470)
++++|+..|+++++..|.++. +|..+|.++.+.|++++|+..|+++++..|.+..++...+.+... .|++++|+..|+
T Consensus 114 ~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~~a~~~~~~~~~~~~A~~~~~ 193 (308)
T 2ond_A 114 KYEKVHSIYNRLLAIEDIDPTLVYIQYMKFARRAEGIKSGRMIFKKAREDARTRHHVYVTAALMEYYCSKDKSVAFKIFE 193 (308)
T ss_dssp CHHHHHHHHHHHHTSSSSCTHHHHHHHHHHHHHHHCHHHHHHHHHHHHTSTTCCTHHHHHHHHHHHHTSCCHHHHHHHHH
T ss_pred CHHHHHHHHHHHHhccccCccHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHcCCHHHHHHHHH
Confidence 345555555555555677776 899999999999999999999999999999988888877766543 799999999999
Q ss_pred HHHhhCCCChHHHHHHHHHHHhhhcccccccccchhhhhHHHhcCCHHHHHHHHHHHHhc---CCC-CHHHHHHHHHHHH
Q 012143 225 DLILKDQNHPAALINYAALLLCKYGSVLAGAGANTGEGACLDQASAVNVAKECLLAALKA---DPK-AAHIWANLANAYY 300 (470)
Q Consensus 225 ~~l~~~p~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~---~p~-~~~~~~~la~~~~ 300 (470)
++++.+|+++..|..++.++. ..|++++|+.+|++++.. .|+ ...+|..++..+.
T Consensus 194 ~al~~~p~~~~~~~~~~~~~~---------------------~~g~~~~A~~~~~~al~~~~l~p~~~~~l~~~~~~~~~ 252 (308)
T 2ond_A 194 LGLKKYGDIPEYVLAYIDYLS---------------------HLNEDNNTRVLFERVLTSGSLPPEKSGEIWARFLAFES 252 (308)
T ss_dssp HHHHHHTTCHHHHHHHHHHHH---------------------TTCCHHHHHHHHHHHHHSSSSCGGGCHHHHHHHHHHHH
T ss_pred HHHHhCCCcHHHHHHHHHHHH---------------------HCCCHHHHHHHHHHHHhccCCCHHHHHHHHHHHHHHHH
Confidence 999999999999988888876 689999999999999995 553 7889999999999
Q ss_pred HcCChhHHHHHHHHHHhcCCCccc
Q 012143 301 LTGDHRSSGKCLEKAAKLEPNCMS 324 (470)
Q Consensus 301 ~~g~~~~A~~~~~~a~~~~p~~~~ 324 (470)
..|++++|...++++++..|++..
T Consensus 253 ~~g~~~~a~~~~~~a~~~~p~~~~ 276 (308)
T 2ond_A 253 NIGDLASILKVEKRRFTAFREEYE 276 (308)
T ss_dssp HHSCHHHHHHHHHHHHHHTTTTTS
T ss_pred HcCCHHHHHHHHHHHHHHcccccc
Confidence 999999999999999999998654
|
| >4gyw_A UDP-N-acetylglucosamine--peptide N- acetylglucosaminyltransferase 110 kDa subunit...; GT-B, glycosyltransferase, glcnacylation, transferase-peptid; HET: UDP NAG; 1.70A {Homo sapiens} PDB: 3pe3_A* 3pe4_A* 4ay5_A* 4ay6_A* 3tax_A* 4gyy_A* 4gz3_A* 4gz5_A* 4gz6_A* | Back alignment and structure |
|---|
Probab=99.91 E-value=2.2e-23 Score=203.21 Aligned_cols=141 Identities=21% Similarity=0.257 Sum_probs=90.2
Q ss_pred CccchHHHHHHHHHHHHcCChHHHHHHHHHHhhcCCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCChHHHHHHH
Q 012143 162 DTRQAVVWNTLGLILLKSGRLQSSISVLSSLLAVDPNNCDCIGNLGIAYFQSGDMEQSAKCFQDLILKDQNHPAALINYA 241 (470)
Q Consensus 162 ~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~l~ 241 (470)
.|++++++.++|.++..+|++++|+.+|+++++++|++..++.++|.++..+|++++|+..|+++++++|++..++.++|
T Consensus 5 ~P~~a~al~nLG~~~~~~G~~~eAi~~~~kAl~l~P~~~~a~~nLg~~l~~~g~~~eA~~~~~~Al~l~P~~~~a~~nLg 84 (723)
T 4gyw_A 5 CPTHADSLNNLANIKREQGNIEEAVRLYRKALEVFPEFAAAHSNLASVLQQQGKLQEALMHYKEAIRISPTFADAYSNMG 84 (723)
T ss_dssp -CHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHH
T ss_pred CCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHH
Confidence 46666666666666666666666666666666666666666666666666666666666666666666666666666666
Q ss_pred HHHHhhhcccccccccchhhhhHHHhcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCChhHHHHHHHHHHhcCCC
Q 012143 242 ALLLCKYGSVLAGAGANTGEGACLDQASAVNVAKECLLAALKADPKAAHIWANLANAYYLTGDHRSSGKCLEKAAKLEPN 321 (470)
Q Consensus 242 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~p~ 321 (470)
.++. ..|++++|++.|+++++++|+++.++.++|.++..+|++++|+..|+++++++|+
T Consensus 85 ~~l~---------------------~~g~~~~A~~~~~kAl~l~P~~~~a~~~Lg~~~~~~g~~~eAi~~~~~Al~l~P~ 143 (723)
T 4gyw_A 85 NTLK---------------------EMQDVQGALQCYTRAIQINPAFADAHSNLASIHKDSGNIPEAIASYRTALKLKPD 143 (723)
T ss_dssp HHHH---------------------HTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSC
T ss_pred HHHH---------------------HcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC
Confidence 5555 4666666666666666666666666666666666666666666666666666555
Q ss_pred cc
Q 012143 322 CM 323 (470)
Q Consensus 322 ~~ 323 (470)
+.
T Consensus 144 ~~ 145 (723)
T 4gyw_A 144 FP 145 (723)
T ss_dssp CH
T ss_pred Ch
Confidence 43
|
| >3ulq_A Response regulator aspartate phosphatase F; tetratricopeptide repeat, response regulator helix-turn-HELX binding, 3-helix bundle; 2.30A {Bacillus subtilis} | Back alignment and structure |
|---|
Probab=99.91 E-value=2.5e-22 Score=184.53 Aligned_cols=308 Identities=10% Similarity=0.072 Sum_probs=223.2
Q ss_pred hhhhcChhhHHHHHHHHHHhCC---CChhHH--HHH--HHHHHHhCChhHHH-----------HHHHHHHHHHhhhhccc
Q 012143 51 SSREEKVSSLKTGLVHVARKMP---KNAHAH--FLL--GLMYQRLGQPLKAV-----------SSYEKAEEILLRCEADI 112 (470)
Q Consensus 51 ~~~~~~~~~A~~~~~~~l~~~p---~~~~~~--~~l--~~~~~~~g~~~~A~-----------~~~~~al~~~~~~~~~~ 112 (470)
....+++++|...++++.+.-+ .+...+ +.+ .......+++..+. ..++++-. .|.+.
T Consensus 22 ~i~~~~~~~A~~l~~~i~~~~~~~~~~~~~~~y~~ll~~r~~~~~~~~~~~~~~~~e~~~~~~~~~~~i~~-~~~~~--- 97 (383)
T 3ulq_A 22 YIRRFSIPDAEYLRREIKQELDQMEEDQDLHLYYSLMEFRHNLMLEYLEPLEKMRIEEQPRLSDLLLEIDK-KQARL--- 97 (383)
T ss_dssp HHHTTCHHHHHHHHHHHHHHHHTSCCCHHHHHHHHHHHHHHHHHHHHHGGGGGSCGGGSCCHHHHHHHHHH-HTHHH---
T ss_pred HHHHcCHHHHHHHHHHHHHHHHhhccchHHHHHHHHHHHHHHHHHhhcCcccccccccccchhhHHHHHHh-cCCCc---
Confidence 6678899999999988765432 344443 222 22333345555555 55655433 22211
Q ss_pred chhhhHHHHHHhhhccccccccCCCccccccCcccHHHHHHHHHHhhhc------CccchHHHHHHHHHHHHcCChHHHH
Q 012143 113 ARPELLSLVQIHHAQCLLPESSGDNSLDKELEPEELEEILSKLKESMQS------DTRQAVVWNTLGLILLKSGRLQSSI 186 (470)
Q Consensus 113 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~------~p~~~~~~~~l~~~~~~~~~~~~A~ 186 (470)
.... ....++..|.. +...|++++|+..|++++.. .+..+.++..+|.++...|++++|+
T Consensus 98 --~~~l-~~~~~~~~g~~-----------~~~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~lg~~~~~~~~~~~A~ 163 (383)
T 3ulq_A 98 --TGLL-EYYFNFFRGMY-----------ELDQREYLSAIKFFKKAESKLIFVKDRIEKAEFFFKMSESYYYMKQTYFSM 163 (383)
T ss_dssp --HHHH-HHHHHHHHHHH-----------HHHTTCHHHHHHHHHHHHTTGGGCCCHHHHHHHHHHHHHHHHHTTCHHHHH
T ss_pred --hhHH-HHHHHHHHHHH-----------HHHhcCHHHHHHHHHHHHHHHhhCCCHHHHHHHHHHHHHHHHHcCCHHHHH
Confidence 1111 11223334443 35667889999999999886 3345689999999999999999999
Q ss_pred HHHHHHhhcCCCC-------hHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCChHHHHHHHHHHHhhhcccccccccch
Q 012143 187 SVLSSLLAVDPNN-------CDCIGNLGIAYFQSGDMEQSAKCFQDLILKDQNHPAALINYAALLLCKYGSVLAGAGANT 259 (470)
Q Consensus 187 ~~~~~a~~~~~~~-------~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~l~~~~~~~~~~~~~~~~~~~ 259 (470)
.++++++++.+.. ..++..+|.++..+|++++|+..|++++.+.|..... ...+.++.
T Consensus 164 ~~~~~al~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~-~~~~~~~~-------------- 228 (383)
T 3ulq_A 164 DYARQAYEIYKEHEAYNIRLLQCHSLFATNFLDLKQYEDAISHFQKAYSMAEAEKQP-QLMGRTLY-------------- 228 (383)
T ss_dssp HHHHHHHHHHHTCSTTHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCH-HHHHHHHH--------------
T ss_pred HHHHHHHHHHHhCccchHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHcCCh-HHHHHHHH--------------
Confidence 9999999984433 4589999999999999999999999999886644321 11122221
Q ss_pred hhhhHHHhcCCHHHHHHHHHHHHh-----cC-CCCHHHHHHHHHHHHHcCChhHHHHHHHHHHhcCCCcccHHHHHHHHH
Q 012143 260 GEGACLDQASAVNVAKECLLAALK-----AD-PKAAHIWANLANAYYLTGDHRSSGKCLEKAAKLEPNCMSTRYAVAVSR 333 (470)
Q Consensus 260 ~~~~~~~~~~~~~~A~~~~~~~~~-----~~-p~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~p~~~~~~~~l~~~~ 333 (470)
.+|.++...|++++|+.+|+++++ .+ |..+.++..+|.++..+|++++|+.++++++.+.+.......
T Consensus 229 ~lg~~y~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~------ 302 (383)
T 3ulq_A 229 NIGLCKNSQSQYEDAIPYFKRAIAVFEESNILPSLPQAYFLITQIHYKLGKIDKAHEYHSKGMAYSQKAGDVIY------ 302 (383)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCGGGHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHH------
T ss_pred HHHHHHHHCCCHHHHHHHHHHHHHHHHhhccchhHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHcCCHHH------
Confidence 245555589999999999999999 46 778899999999999999999999999999987654322211
Q ss_pred HHHhhhccCchHHhhhhHHHHHHHhhcCCCCCCCcHHHHHHHHHHHhcccc---HHHHHHHHHHHhc-chhhhhHhhHHH
Q 012143 334 IKDAERSQEPTEQLSWAGNEMASILREGDPVQIEPPIAWAGFAAVQKTHHE---VAAAFETEENELS-KMEECAGAGESA 409 (470)
Q Consensus 334 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~---~~~A~~~~~~~~~-~~~~~~~~~l~~ 409 (470)
...+..++.++...|+ +.+|+..+++.-. +.....+..+|.
T Consensus 303 -----------------------------------~~~~~~l~~~~~~~~~~~~~~~al~~~~~~~~~~~~~~~~~~la~ 347 (383)
T 3ulq_A 303 -----------------------------------LSEFEFLKSLYLSGPDEEAIQGFFDFLESKMLYADLEDFAIDVAK 347 (383)
T ss_dssp -----------------------------------HHHHHHHHHHHTSSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred -----------------------------------HHHHHHHHHHHhCCCcHHHHHHHHHHHHHCcCHHHHHHHHHHHHH
Confidence 1124558888888888 8888888887533 344467889999
Q ss_pred HHHHhccHHHHHHHHHHHHhcCC
Q 012143 410 FLDQASAVNVAKECLLAALKADP 432 (470)
Q Consensus 410 ~~~~~~~~~~A~~~~~~al~~~p 432 (470)
++...|++++|+.+|++++++..
T Consensus 348 ~y~~~g~~~~A~~~~~~al~~~~ 370 (383)
T 3ulq_A 348 YYHERKNFQKASAYFLKVEQVRQ 370 (383)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHHT
T ss_pred HHHHCCCHHHHHHHHHHHHHHHH
Confidence 99999999999999999998644
|
| >3nf1_A KLC 1, kinesin light chain 1; TPR, structural genomics consortium (SGC), motor PR transport protein; 2.80A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.89 E-value=6.6e-23 Score=182.70 Aligned_cols=248 Identities=15% Similarity=0.112 Sum_probs=190.5
Q ss_pred cCccchHHHHHHHHHHHHcCChHHHHHHHHHHhhc--------CCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC--
Q 012143 161 SDTRQAVVWNTLGLILLKSGRLQSSISVLSSLLAV--------DPNNCDCIGNLGIAYFQSGDMEQSAKCFQDLILKD-- 230 (470)
Q Consensus 161 ~~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~--------~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~-- 230 (470)
.+|..+.++..+|.++...|++++|+.+|++++++ .|....++..+|.++...|++++|+..+++++...
T Consensus 22 ~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~ 101 (311)
T 3nf1_A 22 EIPARLRTLHNLVIQYASQGRYEVAVPLCKQALEDLEKTSGHDHPDVATMLNILALVYRDQNKYKDAANLLNDALAIREK 101 (311)
T ss_dssp TSCHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHCSSSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHH
T ss_pred cchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHH
Confidence 46788899999999999999999999999999995 66678899999999999999999999999999873
Q ss_pred ------CCChHHHHHHHHHHHhhhcccccccccchhhhhHHHhcCCHHHHHHHHHHHHhcC--------CCCHHHHHHHH
Q 012143 231 ------QNHPAALINYAALLLCKYGSVLAGAGANTGEGACLDQASAVNVAKECLLAALKAD--------PKAAHIWANLA 296 (470)
Q Consensus 231 ------p~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~--------p~~~~~~~~la 296 (470)
|....++..+|.++. ..|++++|+.+++++++.. |....++..+|
T Consensus 102 ~~~~~~~~~~~~~~~l~~~~~---------------------~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la 160 (311)
T 3nf1_A 102 TLGKDHPAVAATLNNLAVLYG---------------------KRGKYKEAEPLCKRALEIREKVLGKDHPDVAKQLNNLA 160 (311)
T ss_dssp HHCTTCHHHHHHHHHHHHHHH---------------------TTTCHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHH
T ss_pred HhCCCChHHHHHHHHHHHHHH---------------------HcCcHHHHHHHHHHHHHHHHHhcCCCChHHHHHHHHHH
Confidence 334455556665555 7999999999999999874 55678899999
Q ss_pred HHHHHcCChhHHHHHHHHHHhcCCCcccHHHHHHHHHHHHhhhccCchHHhhhhHHHHHHHhhcCCCCCCCcHHHHHHHH
Q 012143 297 NAYYLTGDHRSSGKCLEKAAKLEPNCMSTRYAVAVSRIKDAERSQEPTEQLSWAGNEMASILREGDPVQIEPPIAWAGFA 376 (470)
Q Consensus 297 ~~~~~~g~~~~A~~~~~~a~~~~p~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ 376 (470)
.++...|++++|+.+|++++....... ....+....++..+|
T Consensus 161 ~~~~~~~~~~~A~~~~~~a~~~~~~~~--------------------------------------~~~~~~~~~~~~~la 202 (311)
T 3nf1_A 161 LLCQNQGKYEEVEYYYQRALEIYQTKL--------------------------------------GPDDPNVAKTKNNLA 202 (311)
T ss_dssp HHHHTTTCHHHHHHHHHHHHHHHHHTS--------------------------------------CTTCHHHHHHHHHHH
T ss_pred HHHHHcCCHHHHHHHHHHHHHHHHHHh--------------------------------------CCCCHHHHHHHHHHH
Confidence 999999999999999999988621100 000011235788899
Q ss_pred HHHhccccHHHHHHHHHHHhcchhh-----------------hhHhhHHHHHHHhccHHHHHHHHHHHHhcCCCcHHHHH
Q 012143 377 AVQKTHHEVAAAFETEENELSKMEE-----------------CAGAGESAFLDQASAVNVAKECLLAALKADPKAAHIWA 439 (470)
Q Consensus 377 ~~~~~~~~~~~A~~~~~~~~~~~~~-----------------~~~~~l~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~ 439 (470)
.++...|++++|+..+.+.+...+. ..+...+..+...+.+.+|+..+++++...|..+.++.
T Consensus 203 ~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~ 282 (311)
T 3nf1_A 203 SCYLKQGKFKQAETLYKEILTRAHEREFGSVDDENKPIWMHAEEREECKGKQKDGTSFGEYGGWYKACKVDSPTVTTTLK 282 (311)
T ss_dssp HHHHHHTCHHHHHHHHHHHHHHHHHHHHC------CCHHHHHHHHHHC-------CCSCCCC---------CHHHHHHHH
T ss_pred HHHHHcCCHHHHHHHHHHHHHHHHHhcCCCCCcchHHHHHHHHHHHHhcCchhhHHHHHHHHHHHhhcCCCCchHHHHHH
Confidence 9999999999999999997652211 22334444555666778888899999999999999999
Q ss_pred HHHHHHHHcCChHHHHHHHHHHHHhhcc
Q 012143 440 NLANAYYLTGDHRSSGKCLEKVLMVYCS 467 (470)
Q Consensus 440 ~la~~~~~~g~~~~A~~~~~~al~~~~~ 467 (470)
.+|.+|...|++++|+.+|++++++.++
T Consensus 283 ~la~~~~~~g~~~~A~~~~~~al~l~~~ 310 (311)
T 3nf1_A 283 NLGALYRRQGKFEAAETLEEAAMRSRKQ 310 (311)
T ss_dssp HHHHHHHHHTCHHHHHHHHHHHHHHHC-
T ss_pred HHHHHHHHCCCHHHHHHHHHHHHHHhhc
Confidence 9999999999999999999999998765
|
| >3qky_A Outer membrane assembly lipoprotein YFIO; membrane protein; 2.15A {Rhodothermus marinus} | Back alignment and structure |
|---|
Probab=99.89 E-value=2.7e-22 Score=173.82 Aligned_cols=235 Identities=12% Similarity=-0.001 Sum_probs=155.3
Q ss_pred HhcCCCCcchhhhcccchhhhhcChhhHHHHHHHHHHhCCCC---hhHHHHHHHHHHHhCChhHHHHHHHHHHHHHhhhh
Q 012143 33 LEFGVDADGDQSGLGTSSSSREEKVSSLKTGLVHVARKMPKN---AHAHFLLGLMYQRLGQPLKAVSSYEKAEEILLRCE 109 (470)
Q Consensus 33 l~~~p~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~p~~---~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~ 109 (470)
.+..|+++..++.+|.. +...|++++|+..|+++++.+|++ +.+++.+|.++...|++++|+..|+++++..|++.
T Consensus 8 ~~~~~~~~~~~~~~a~~-~~~~g~~~~A~~~~~~~l~~~p~~~~~~~a~~~lg~~~~~~~~~~~A~~~~~~~l~~~p~~~ 86 (261)
T 3qky_A 8 GRLRHSSPQEAFERAME-FYNQGKYDRAIEYFKAVFTYGRTHEWAADAQFYLARAYYQNKEYLLAASEYERFIQIYQIDP 86 (261)
T ss_dssp ---CCSSHHHHHHHHHH-HHHTTCHHHHHHHHHHHGGGCSCSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCT
T ss_pred CCCCCCCHHHHHHHHHH-HHHhCCHHHHHHHHHHHHHhCCCCcchHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHCCCCc
Confidence 45678888899999999 999999999999999999999988 88999999999999999999999999998866531
Q ss_pred cccchhhhHHHHHHhhhccccccccCCCccccccCcccHHHHHHHHHHhhhcCccchHHHHHHHHHHHHcCChHHHHHHH
Q 012143 110 ADIARPELLSLVQIHHAQCLLPESSGDNSLDKELEPEELEEILSKLKESMQSDTRQAVVWNTLGLILLKSGRLQSSISVL 189 (470)
Q Consensus 110 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~~~~~~A~~~~ 189 (470)
.. ..+++.+|.++...+.. .+...|++++|+..|++++..+|+++.+...+..+....+.
T Consensus 87 ~~---------~~a~~~lg~~~~~~~~~---~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~a~~~~~~~~~~-------- 146 (261)
T 3qky_A 87 RV---------PQAEYERAMCYYKLSPP---YELDQTDTRKAIEAFQLFIDRYPNHELVDDATQKIRELRAK-------- 146 (261)
T ss_dssp TH---------HHHHHHHHHHHHHHCCC---TTSCCHHHHHHHHHHHHHHHHCTTCTTHHHHHHHHHHHHHH--------
T ss_pred hh---------HHHHHHHHHHHHHhccc---ccccchhHHHHHHHHHHHHHHCcCchhHHHHHHHHHHHHHH--------
Confidence 10 01122222222110000 01124444555555555555555444333222221111110
Q ss_pred HHHhhcCCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCC---hHHHHHHHHHHHhhhcccccccccchhhhhHHH
Q 012143 190 SSLLAVDPNNCDCIGNLGIAYFQSGDMEQSAKCFQDLILKDQNH---PAALINYAALLLCKYGSVLAGAGANTGEGACLD 266 (470)
Q Consensus 190 ~~a~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~---~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~ 266 (470)
....++.+|.+|...|++++|+..|++++...|++ +.++..+|.++...+... ....
T Consensus 147 ---------~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~a~~~l~~~~~~~g~~~-----------~~~~ 206 (261)
T 3qky_A 147 ---------LARKQYEAARLYERRELYEAAAVTYEAVFDAYPDTPWADDALVGAMRAYIAYAEQS-----------VRAR 206 (261)
T ss_dssp ---------HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTSTTHHHHHHHHHHHHHHHHHTS-----------CGGG
T ss_pred ---------HHHHHHHHHHHHHHccCHHHHHHHHHHHHHHCCCCchHHHHHHHHHHHHHHhcccc-----------hhhc
Confidence 11224889999999999999999999999999984 557888888776321000 0001
Q ss_pred hcCCHHHHHHHHHHHHhcCCCCH---HHHHHHHHHHHHcCChhHH
Q 012143 267 QASAVNVAKECLLAALKADPKAA---HIWANLANAYYLTGDHRSS 308 (470)
Q Consensus 267 ~~~~~~~A~~~~~~~~~~~p~~~---~~~~~la~~~~~~g~~~~A 308 (470)
..|++++|+..|+++++..|+++ .+...++.++...++++++
T Consensus 207 ~~~~~~~A~~~~~~~~~~~p~~~~~~~a~~~l~~~~~~~~~~~~~ 251 (261)
T 3qky_A 207 QPERYRRAVELYERLLQIFPDSPLLRTAEELYTRARQRLTELEGD 251 (261)
T ss_dssp HHHHHHHHHHHHHHHHHHCTTCTHHHHHHHHHHHHHHHHHHHHTC
T ss_pred ccchHHHHHHHHHHHHHHCCCChHHHHHHHHHHHHHHHHHHhhhh
Confidence 34889999999999999999985 4566677777777666554
|
| >3qky_A Outer membrane assembly lipoprotein YFIO; membrane protein; 2.15A {Rhodothermus marinus} | Back alignment and structure |
|---|
Probab=99.89 E-value=1.4e-21 Score=169.36 Aligned_cols=219 Identities=13% Similarity=0.026 Sum_probs=170.7
Q ss_pred hhcCccchHHHHHHHHHHHHcCChHHHHHHHHHHhhcCCCC---hHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCC--
Q 012143 159 MQSDTRQAVVWNTLGLILLKSGRLQSSISVLSSLLAVDPNN---CDCIGNLGIAYFQSGDMEQSAKCFQDLILKDQNH-- 233 (470)
Q Consensus 159 ~~~~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~---~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~-- 233 (470)
....|.++..++.+|..++..|++++|+..|+++++..|++ +.+++.+|.++..+|++++|+..|++++...|++
T Consensus 8 ~~~~~~~~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~a~~~lg~~~~~~~~~~~A~~~~~~~l~~~p~~~~ 87 (261)
T 3qky_A 8 GRLRHSSPQEAFERAMEFYNQGKYDRAIEYFKAVFTYGRTHEWAADAQFYLARAYYQNKEYLLAASEYERFIQIYQIDPR 87 (261)
T ss_dssp ---CCSSHHHHHHHHHHHHHTTCHHHHHHHHHHHGGGCSCSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCTT
T ss_pred CCCCCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCCCcchHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHCCCCch
Confidence 34578889999999999999999999999999999999999 8999999999999999999999999999998865
Q ss_pred -hHHHHHHHHHHHhhhcccccccccchhhhhHHHhcCCHHHHHHHHHHHHhcCCCCHHHH-----------------HHH
Q 012143 234 -PAALINYAALLLCKYGSVLAGAGANTGEGACLDQASAVNVAKECLLAALKADPKAAHIW-----------------ANL 295 (470)
Q Consensus 234 -~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~-----------------~~l 295 (470)
+.+++.+|.++..... .++...|++++|+..|+++++..|+++.+. +.+
T Consensus 88 ~~~a~~~lg~~~~~~~~-------------~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~a~~~~~~~~~~~~~~~~~l 154 (261)
T 3qky_A 88 VPQAEYERAMCYYKLSP-------------PYELDQTDTRKAIEAFQLFIDRYPNHELVDDATQKIRELRAKLARKQYEA 154 (261)
T ss_dssp HHHHHHHHHHHHHHHCC-------------CTTSCCHHHHHHHHHHHHHHHHCTTCTTHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHhcc-------------cccccchhHHHHHHHHHHHHHHCcCchhHHHHHHHHHHHHHHHHHHHHHH
Confidence 4566677766651000 000018999999999999999999987666 788
Q ss_pred HHHHHHcCChhHHHHHHHHHHhcCCCcccHHHHHHHHHHHHhhhccCchHHhhhhHHHHHHHhhcCCCCCCCcHHHHHHH
Q 012143 296 ANAYYLTGDHRSSGKCLEKAAKLEPNCMSTRYAVAVSRIKDAERSQEPTEQLSWAGNEMASILREGDPVQIEPPIAWAGF 375 (470)
Q Consensus 296 a~~~~~~g~~~~A~~~~~~a~~~~p~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l 375 (470)
|.+|...|++++|+..|++++...|++.. .+.++..+
T Consensus 155 a~~~~~~g~~~~A~~~~~~~l~~~p~~~~-------------------------------------------~~~a~~~l 191 (261)
T 3qky_A 155 ARLYERRELYEAAAVTYEAVFDAYPDTPW-------------------------------------------ADDALVGA 191 (261)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHHCTTSTT-------------------------------------------HHHHHHHH
T ss_pred HHHHHHccCHHHHHHHHHHHHHHCCCCch-------------------------------------------HHHHHHHH
Confidence 99999999999999999999998887542 12344455
Q ss_pred HHHHhccccHHHHHHHHHHHhcchhhhhHhhHHHHHHHhccHHHHHHHHHHHHhcCCCcH---HHHHHHHHHHHHcCChH
Q 012143 376 AAVQKTHHEVAAAFETEENELSKMEECAGAGESAFLDQASAVNVAKECLLAALKADPKAA---HIWANLANAYYLTGDHR 452 (470)
Q Consensus 376 ~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~p~~~---~~~~~la~~~~~~g~~~ 452 (470)
|.++...|+...+ ....|++++|+..|+++++..|+++ .+...++.++...++++
T Consensus 192 ~~~~~~~g~~~~~----------------------~~~~~~~~~A~~~~~~~~~~~p~~~~~~~a~~~l~~~~~~~~~~~ 249 (261)
T 3qky_A 192 MRAYIAYAEQSVR----------------------ARQPERYRRAVELYERLLQIFPDSPLLRTAEELYTRARQRLTELE 249 (261)
T ss_dssp HHHHHHHHHTSCG----------------------GGHHHHHHHHHHHHHHHHHHCTTCTHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHhcccchh----------------------hcccchHHHHHHHHHHHHHHCCCChHHHHHHHHHHHHHHHHHHhh
Confidence 5555443322110 1245889999999999999999984 56677888888877776
Q ss_pred HHH
Q 012143 453 SSG 455 (470)
Q Consensus 453 ~A~ 455 (470)
++.
T Consensus 250 ~~~ 252 (261)
T 3qky_A 250 GDA 252 (261)
T ss_dssp TCT
T ss_pred hhh
Confidence 554
|
| >3nf1_A KLC 1, kinesin light chain 1; TPR, structural genomics consortium (SGC), motor PR transport protein; 2.80A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.89 E-value=5.2e-23 Score=183.35 Aligned_cols=255 Identities=13% Similarity=0.119 Sum_probs=195.5
Q ss_pred CCCCcchhhhcccchhhhhcChhhHHHHHHHHHHh--------CCCChhHHHHHHHHHHHhCChhHHHHHHHHHHHHHhh
Q 012143 36 GVDADGDQSGLGTSSSSREEKVSSLKTGLVHVARK--------MPKNAHAHFLLGLMYQRLGQPLKAVSSYEKAEEILLR 107 (470)
Q Consensus 36 ~p~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~--------~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~ 107 (470)
+|+....+..+|.. +...|++++|...++++++. +|..+.++..+|.++...|++++|+.+|++++.....
T Consensus 23 ~~~~~~~~~~l~~~-~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~ 101 (311)
T 3nf1_A 23 IPARLRTLHNLVIQ-YASQGRYEVAVPLCKQALEDLEKTSGHDHPDVATMLNILALVYRDQNKYKDAANLLNDALAIREK 101 (311)
T ss_dssp SCHHHHHHHHHHHH-HHHTTCHHHHHHHHHHHHHHHHHHHCSSSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHH
T ss_pred chHHHHHHHHHHHH-HHHcCCHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHH
Confidence 45566788999999 99999999999999999984 6777889999999999999999999999999987532
Q ss_pred hhcccchhhhHHHHHHhhhccccccccCCCccccccCcccHHHHHHHHHHhhhcC--------ccchHHHHHHHHHHHHc
Q 012143 108 CEADIARPELLSLVQIHHAQCLLPESSGDNSLDKELEPEELEEILSKLKESMQSD--------TRQAVVWNTLGLILLKS 179 (470)
Q Consensus 108 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~--------p~~~~~~~~l~~~~~~~ 179 (470)
... ++......++..++.++ ...|++++|+..+++++... |....++..+|.++...
T Consensus 102 ~~~----~~~~~~~~~~~~l~~~~-----------~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~~ 166 (311)
T 3nf1_A 102 TLG----KDHPAVAATLNNLAVLY-----------GKRGKYKEAEPLCKRALEIREKVLGKDHPDVAKQLNNLALLCQNQ 166 (311)
T ss_dssp HHC----TTCHHHHHHHHHHHHHH-----------HTTTCHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHTT
T ss_pred HhC----CCChHHHHHHHHHHHHH-----------HHcCcHHHHHHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHHc
Confidence 100 11122234455555554 56677899999999999874 66778999999999999
Q ss_pred CChHHHHHHHHHHhhc--------CCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC---------CCChHHHHHHHH
Q 012143 180 GRLQSSISVLSSLLAV--------DPNNCDCIGNLGIAYFQSGDMEQSAKCFQDLILKD---------QNHPAALINYAA 242 (470)
Q Consensus 180 ~~~~~A~~~~~~a~~~--------~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~---------p~~~~~~~~l~~ 242 (470)
|++++|+.+|++++.. .|....++..+|.++...|++++|+..+++++... +.....+.....
T Consensus 167 ~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~ 246 (311)
T 3nf1_A 167 GKYEEVEYYYQRALEIYQTKLGPDDPNVAKTKNNLASCYLKQGKFKQAETLYKEILTRAHEREFGSVDDENKPIWMHAEE 246 (311)
T ss_dssp TCHHHHHHHHHHHHHHHHHTSCTTCHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHHC------CCHHHHHHH
T ss_pred CCHHHHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCCCcchHHHHHHHHH
Confidence 9999999999999998 66677899999999999999999999999999753 333333444443
Q ss_pred HHHhhhcccccccccchhhhhHHHhcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCChhHHHHHHHHHHhcCCC
Q 012143 243 LLLCKYGSVLAGAGANTGEGACLDQASAVNVAKECLLAALKADPKAAHIWANLANAYYLTGDHRSSGKCLEKAAKLEPN 321 (470)
Q Consensus 243 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~p~ 321 (470)
... .+..+...+.+.+++..+.++....|..+.++..+|.++...|++++|+.+|++++++.|.
T Consensus 247 ~~~---------------~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~l~~~ 310 (311)
T 3nf1_A 247 REE---------------CKGKQKDGTSFGEYGGWYKACKVDSPTVTTTLKNLGALYRRQGKFEAAETLEEAAMRSRKQ 310 (311)
T ss_dssp HHH---------------C-------CCSCCCC---------CHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHC-
T ss_pred HHH---------------hcCchhhHHHHHHHHHHHhhcCCCCchHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHhhc
Confidence 333 3455567888888999999999999999999999999999999999999999999998775
|
| >3q15_A PSP28, response regulator aspartate phosphatase H; tetratricopeptide repeat, 3-helix bundle, phosphorelay signa transduction, phosphatase; 2.19A {Bacillus subtilis} | Back alignment and structure |
|---|
Probab=99.89 E-value=1.3e-20 Score=172.56 Aligned_cols=243 Identities=16% Similarity=0.071 Sum_probs=191.9
Q ss_pred HHHHHHHHHHHcCChHHHHHHHHHHhhcCC------CChHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCChHHHHHHH
Q 012143 168 VWNTLGLILLKSGRLQSSISVLSSLLAVDP------NNCDCIGNLGIAYFQSGDMEQSAKCFQDLILKDQNHPAALINYA 241 (470)
Q Consensus 168 ~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~------~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~l~ 241 (470)
.++.+|..+...|++++|+..|++++.+.+ ..+.++..+|.+|...|++++|+..+++++.+.+.........+
T Consensus 103 ~~~~~g~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~lg~~y~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~ 182 (378)
T 3q15_A 103 SLFFRGMYEFDQKEYVEAIGYYREAEKELPFVSDDIEKAEFHFKVAEAYYHMKQTHVSMYHILQALDIYQNHPLYSIRTI 182 (378)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHTTGGGCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTSTTCHHHHH
T ss_pred HHHHHHHHHHHHCCHHHHHHHHHHHHHHHhhCCChHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHhCCCchhhHH
Confidence 567799999999999999999999998743 24568999999999999999999999999988765433112223
Q ss_pred HHHHhhhcccccccccchhhhhHHHhcCCHHHHHHHHHHHHhcCCC------CHHHHHHHHHHHHHcCChhHHHHHHHHH
Q 012143 242 ALLLCKYGSVLAGAGANTGEGACLDQASAVNVAKECLLAALKADPK------AAHIWANLANAYYLTGDHRSSGKCLEKA 315 (470)
Q Consensus 242 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~p~------~~~~~~~la~~~~~~g~~~~A~~~~~~a 315 (470)
.++. .+|.++...|++++|+.+|++++++.+. ...++.++|.+|..+|++++|+.+|+++
T Consensus 183 ~~~~--------------~lg~~y~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~lg~~y~~~~~~~~A~~~~~~a 248 (378)
T 3q15_A 183 QSLF--------------VIAGNYDDFKHYDKALPHLEAALELAMDIQNDRFIAISLLNIANSYDRSGDDQMAVEHFQKA 248 (378)
T ss_dssp HHHH--------------HHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHH
T ss_pred HHHH--------------HHHHHHHHhCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHH
Confidence 3332 2466666899999999999999987432 3568899999999999999999999999
Q ss_pred HhcCCCcccHHHHHHHHHHHHhhhccCchHHhhhhHHHHHHHhhcCCCCCCCcHHHHHHHHHHHhccccHHHHHHHHHHH
Q 012143 316 AKLEPNCMSTRYAVAVSRIKDAERSQEPTEQLSWAGNEMASILREGDPVQIEPPIAWAGFAAVQKTHHEVAAAFETEENE 395 (470)
Q Consensus 316 ~~~~p~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~ 395 (470)
+.+.+.... |..+.++..+|.++...|++++|+..++++
T Consensus 249 l~~~~~~~~-----------------------------------------~~~~~~~~~la~~~~~~g~~~~A~~~~~~a 287 (378)
T 3q15_A 249 AKVSREKVP-----------------------------------------DLLPKVLFGLSWTLCKAGQTQKAFQFIEEG 287 (378)
T ss_dssp HHHHHHHCG-----------------------------------------GGHHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred HHHHHhhCC-----------------------------------------hhHHHHHHHHHHHHHHCCCHHHHHHHHHHH
Confidence 985332110 012357889999999999999999999996
Q ss_pred hcc-------hhhhhHhhHHHHHHHhcc---HHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHcCChHHHHHHHHHHHHhh
Q 012143 396 LSK-------MEECAGAGESAFLDQASA---VNVAKECLLAALKADPKAAHIWANLANAYYLTGDHRSSGKCLEKVLMVY 465 (470)
Q Consensus 396 ~~~-------~~~~~~~~l~~~~~~~~~---~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~ 465 (470)
+.. ........++.++...++ +.+|+.++++ ....|....++..+|.+|...|++++|..+|++++++.
T Consensus 288 l~~~~~~~~~~~~~~~~~l~~ly~~~~~~~~~~~al~~~~~-~~~~~~~~~~~~~la~~y~~~g~~~~A~~~~~~al~~~ 366 (378)
T 3q15_A 288 LDHITARSHKFYKELFLFLQAVYKETVDERKIHDLLSYFEK-KNLHAYIEACARSAAAVFESSCHFEQAAAFYRKVLKAQ 366 (378)
T ss_dssp HHHCCTTCCSCHHHHHHHHHHHHSSSCCHHHHHHHHHHHHH-TTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHH
T ss_pred HHHHHHcCCHHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHh-CCChhHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHH
Confidence 652 112334567777878888 8899998887 33445567788999999999999999999999999875
Q ss_pred c
Q 012143 466 C 466 (470)
Q Consensus 466 ~ 466 (470)
.
T Consensus 367 ~ 367 (378)
T 3q15_A 367 E 367 (378)
T ss_dssp H
T ss_pred H
Confidence 4
|
| >4ga2_A E3 SUMO-protein ligase ranbp2; TPR motif, nuclear pore complex component nucleocytoplasmic transport, transport protein; 0.95A {Pan troglodytes} PDB: 4ga0_A 4ga1_A* | Back alignment and structure |
|---|
Probab=99.88 E-value=3.8e-22 Score=156.49 Aligned_cols=142 Identities=11% Similarity=0.189 Sum_probs=134.0
Q ss_pred ccCcccHHHHHHHHHHhhhcCccchHHHHHHHHHHHHcCChHHHHHHHHHHhhcCCCChHHHHHHHHHHHHcCCHHHHHH
Q 012143 142 ELEPEELEEILSKLKESMQSDTRQAVVWNTLGLILLKSGRLQSSISVLSSLLAVDPNNCDCIGNLGIAYFQSGDMEQSAK 221 (470)
Q Consensus 142 ~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~la~~~~~~g~~~~A~~ 221 (470)
+...|++++|+..+++++..+|+++..++.+|.+|...|++++|+.+|+++++++|+++.++..+|.++...|++++|+.
T Consensus 7 ~~~~~~~e~ai~~~~~a~~~~p~~~~~~~~la~~y~~~~~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~~~~~~A~~ 86 (150)
T 4ga2_A 7 RRSKADVERYIASVQGSTPSPRQKSIKGFYFAKLYYEAKEYDLAKKYICTYINVQERDPKAHRFLGLLYELEENTDKAVE 86 (150)
T ss_dssp CCCHHHHHHHHHHHHHHSCSHHHHHTTHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHH
T ss_pred HHHcChHHHHHHHHHHhcccCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCchHHHHH
Confidence 67889999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHhhCCCChHHHHHHHHHHHhhhcccccccccchhhhhHHHhcCCHHHHHHH-HHHHHhcCCCCHHHHHHHHHHHH
Q 012143 222 CFQDLILKDQNHPAALINYAALLLCKYGSVLAGAGANTGEGACLDQASAVNVAKEC-LLAALKADPKAAHIWANLANAYY 300 (470)
Q Consensus 222 ~~~~~l~~~p~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~-~~~~~~~~p~~~~~~~~la~~~~ 300 (470)
.|+++++++|+++.++..+|.++. ..|++++|... ++++++++|+++.++..++.++.
T Consensus 87 ~~~~al~~~p~~~~~~~~la~~~~---------------------~~~~~~~aa~~~~~~al~l~P~~~~~~~l~~~ll~ 145 (150)
T 4ga2_A 87 CYRRSVELNPTQKDLVLKIAELLC---------------------KNDVTDGRAKYWVERAAKLFPGSPAVYKLKEQLLD 145 (150)
T ss_dssp HHHHHHHHCTTCHHHHHHHHHHHH---------------------HHCSSSSHHHHHHHHHHHHSTTCHHHHHHHHHHHH
T ss_pred HHHHHHHhCCCCHHHHHHHHHHHH---------------------HcCChHHHHHHHHHHHHHhCcCCHHHHHHHHHHHH
Confidence 999999999999999999998887 68888877765 58999999999999999999998
Q ss_pred HcCC
Q 012143 301 LTGD 304 (470)
Q Consensus 301 ~~g~ 304 (470)
..|+
T Consensus 146 ~~G~ 149 (150)
T 4ga2_A 146 CEGE 149 (150)
T ss_dssp TCCC
T ss_pred HhCc
Confidence 8885
|
| >2pzi_A Probable serine/threonine-protein kinase PKNG; ATP-recognition, kinase-INH complex, rubredoxin fold, TPR domain, transferase; HET: AXX; 2.40A {Mycobacterium tuberculosis} | Back alignment and structure |
|---|
Probab=99.88 E-value=4.7e-22 Score=195.13 Aligned_cols=204 Identities=11% Similarity=-0.023 Sum_probs=167.4
Q ss_pred hhcCccchHHHHHHHHHHHHcCChHHHHHHHHHHh--------hcCCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC
Q 012143 159 MQSDTRQAVVWNTLGLILLKSGRLQSSISVLSSLL--------AVDPNNCDCIGNLGIAYFQSGDMEQSAKCFQDLILKD 230 (470)
Q Consensus 159 ~~~~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~--------~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~ 230 (470)
...+|+++.+++..+ ...|++++|++.|++++ +.+|++..+++.+|.++..+|++++|+..|+++++.+
T Consensus 387 p~~~p~~~~a~~~~a---~~~~~~~~A~~~~~~al~~~~~~~~~~~p~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~ 463 (681)
T 2pzi_A 387 PLVDPTDVAASVLQA---TVLSQPVQTLDSLRAARHGALDADGVDFSESVELPLMEVRALLDLGDVAKATRKLDDLAERV 463 (681)
T ss_dssp BCCCTTSTTHHHHHH---TTTCCHHHHHHHHHHHHTC-------CCTTCSHHHHHHHHHHHHHTCHHHHHHHHHHHHHHH
T ss_pred ccCCCCCcchHHhhc---ccccCHHHHHHHHHHhhhhcccccccccccchhHHHHHHHHHHhcCCHHHHHHHHHHHhccC
Confidence 456888888888777 78999999999999999 8999999999999999999999999999999999999
Q ss_pred CCChHHHHHHHHHHHhhhcccccccccchhhhhHHHhcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCChhHHHH
Q 012143 231 QNHPAALINYAALLLCKYGSVLAGAGANTGEGACLDQASAVNVAKECLLAALKADPKAAHIWANLANAYYLTGDHRSSGK 310 (470)
Q Consensus 231 p~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~la~~~~~~g~~~~A~~ 310 (470)
|++..+++.+|.++. ..|++++|+..|+++++++|+++.++.++|.++..+|++++ +.
T Consensus 464 p~~~~a~~~lg~~~~---------------------~~g~~~~A~~~~~~al~l~P~~~~~~~~lg~~~~~~g~~~~-~~ 521 (681)
T 2pzi_A 464 GWRWRLVWYRAVAEL---------------------LTGDYDSATKHFTEVLDTFPGELAPKLALAATAELAGNTDE-HK 521 (681)
T ss_dssp CCCHHHHHHHHHHHH---------------------HHTCHHHHHHHHHHHHHHSTTCSHHHHHHHHHHHHHTCCCT-TC
T ss_pred cchHHHHHHHHHHHH---------------------HcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHcCChHH-HH
Confidence 999999999999888 79999999999999999999999999999999999999999 99
Q ss_pred HHHHHHhcCCCcccHHHHHHHHHHHHhhhccCchHHhhhhHHHHHHHhhcCCCCCCCcHHHHHHHHHHHhccccHHHHHH
Q 012143 311 CLEKAAKLEPNCMSTRYAVAVSRIKDAERSQEPTEQLSWAGNEMASILREGDPVQIEPPIAWAGFAAVQKTHHEVAAAFE 390 (470)
Q Consensus 311 ~~~~a~~~~p~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~ 390 (470)
.|+++++++|++..+++ +
T Consensus 522 ~~~~al~~~P~~~~a~~----------------------------------------------~---------------- 539 (681)
T 2pzi_A 522 FYQTVWSTNDGVISAAF----------------------------------------------G---------------- 539 (681)
T ss_dssp HHHHHHHHCTTCHHHHH----------------------------------------------H----------------
T ss_pred HHHHHHHhCCchHHHHH----------------------------------------------H----------------
Confidence 99999999999654333 3
Q ss_pred HHHHHhcchhhhhHhhHHHHHHHhccHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHcCChHHH-HHHHHHHHHhh
Q 012143 391 TEENELSKMEECAGAGESAFLDQASAVNVAKECLLAALKADPKAAHIWANLANAYYLTGDHRSS-GKCLEKVLMVY 465 (470)
Q Consensus 391 ~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A-~~~~~~al~~~ 465 (470)
+|.++...|++++|+..|+++++++|++..+++++|.++...|+.+++ ...+++|++.+
T Consensus 540 ----------------lg~~~~~~g~~~~A~~~~~~al~l~P~~~~a~~~~~~~~~~~~~~~~~~~~~~~~A~~~l 599 (681)
T 2pzi_A 540 ----------------LARARSAEGDRVGAVRTLDEVPPTSRHFTTARLTSAVTLLSGRSTSEVTEEQIRDAARRV 599 (681)
T ss_dssp ----------------HHHHHHHTTCHHHHHHHHHTSCTTSTTHHHHHHHHHHHTC-------CCHHHHHHHHHHH
T ss_pred ----------------HHHHHHHcCCHHHHHHHHHhhcccCcccHHHHHHHHHHHHccCCCCCCCHHHHHHHHHHH
Confidence 333566667777777777777777777777777777777665553333 44444444433
|
| >1qqe_A Vesicular transport protein SEC17; helix-turn-helix TPR-like repeat, protein transport; 2.90A {Saccharomyces cerevisiae} SCOP: a.118.8.1 | Back alignment and structure |
|---|
Probab=99.88 E-value=1.5e-21 Score=171.83 Aligned_cols=158 Identities=11% Similarity=0.085 Sum_probs=124.6
Q ss_pred ccHHHHHHHHHHhhhcCc------cchHHHHHHHHHHHHcCChHHHHHHHHHHhhcCCCC------hHHHHHHHHHHHHc
Q 012143 146 EELEEILSKLKESMQSDT------RQAVVWNTLGLILLKSGRLQSSISVLSSLLAVDPNN------CDCIGNLGIAYFQS 213 (470)
Q Consensus 146 ~~~~~A~~~~~~~~~~~p------~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~------~~~~~~la~~~~~~ 213 (470)
|++++|+..|++++...+ ..+.++.++|.+|..+|++++|+.+|++++++.|.. ..++..+|.+|...
T Consensus 51 g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~Al~l~~~~g~~~~~a~~~~~lg~~~~~~ 130 (292)
T 1qqe_A 51 KELNLAGDSFLKAADYQKKAGNEDEAGNTYVEAYKCFKSGGNSVNAVDSLENAIQIFTHRGQFRRGANFKFELGEILEND 130 (292)
T ss_dssp TCTHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHT
T ss_pred CCHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHh
Confidence 444555555555554422 225688999999999999999999999999987654 45899999999996
Q ss_pred -CCHHHHHHHHHHHHhhCCCC------hHHHHHHHHHHHhhhcccccccccchhhhhHHHhcCCHHHHHHHHHHHHhcCC
Q 012143 214 -GDMEQSAKCFQDLILKDQNH------PAALINYAALLLCKYGSVLAGAGANTGEGACLDQASAVNVAKECLLAALKADP 286 (470)
Q Consensus 214 -g~~~~A~~~~~~~l~~~p~~------~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~p 286 (470)
|++++|+.+|++++++.|.. ..++..+|.++ ...|++++|+.+|++++++.|
T Consensus 131 lg~~~~A~~~~~~Al~~~~~~~~~~~~~~~~~~lg~~~---------------------~~~g~~~~A~~~~~~al~~~~ 189 (292)
T 1qqe_A 131 LHDYAKAIDCYELAGEWYAQDQSVALSNKCFIKCADLK---------------------ALDGQYIEASDIYSKLIKSSM 189 (292)
T ss_dssp TCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHH---------------------HHTTCHHHHHHHHHHHHHTTS
T ss_pred hcCHHHHHHHHHHHHHHHHhCCChHHHHHHHHHHHHHH---------------------HHhCCHHHHHHHHHHHHHHHh
Confidence 99999999999999998754 23344445444 489999999999999999998
Q ss_pred CCHH-------HHHHHHHHHHHcCChhHHHHHHHHHHhcCCCccc
Q 012143 287 KAAH-------IWANLANAYYLTGDHRSSGKCLEKAAKLEPNCMS 324 (470)
Q Consensus 287 ~~~~-------~~~~la~~~~~~g~~~~A~~~~~~a~~~~p~~~~ 324 (470)
++.. ++..+|.++..+|++++|+.+|++++.++|+...
T Consensus 190 ~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~p~~~~ 234 (292)
T 1qqe_A 190 GNRLSQWSLKDYFLKKGLCQLAATDAVAAARTLQEGQSEDPNFAD 234 (292)
T ss_dssp SCTTTGGGHHHHHHHHHHHHHHTTCHHHHHHHHHGGGCC------
T ss_pred cCCcccHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCCC
Confidence 7643 6889999999999999999999999999998654
|
| >1xi4_A Clathrin heavy chain; alpha-ZIG-ZAG, beta-propeller, endocytosis-exocyto complex; 7.90A {Bos taurus} SCOP: i.23.1.1 PDB: 1xi5_A 3iyv_A | Back alignment and structure |
|---|
Probab=99.88 E-value=3.1e-20 Score=184.61 Aligned_cols=348 Identities=12% Similarity=0.037 Sum_probs=207.1
Q ss_pred cchhhhhhhhhhhhhhhhHHHHHHHHHHHHhcCCC----CcchhhhcccchhhhhcChhhHHHHHHHHHHhCCCChhHHH
Q 012143 4 EMDVAEVEGKKINKLGKCRSRISSKMDSALEFGVD----ADGDQSGLGTSSSSREEKVSSLKTGLVHVARKMPKNAHAHF 79 (470)
Q Consensus 4 ~~~~~~~~~~~~~~~g~~~~a~~~~~~~~l~~~p~----~~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~ 79 (470)
+++......+.+...|.+.+++ +.+++++ ..|. +......+... ..+. +..+......+.-. .. .-
T Consensus 984 ~PeeVs~~vKaf~~aglp~Eai-eLLEKiv-l~~s~fs~n~~LqnlLi~t-AIka-D~~Rv~eyI~kLd~-----~d-~~ 1053 (1630)
T 1xi4_A 984 DPEEVSVTVKAFMTADLPNELI-ELLEKIV-LDNSVFSEHRNLQNLLILT-AIKA-DRTRVMEYINRLDN-----YD-AP 1053 (1630)
T ss_pred CHHHhHHHHHHHHhCCCHHHHH-HHHHHHH-cCCCcccccHHHHHHHHHH-HHHh-ChhhHHHHHHHhhh-----cc-HH
Confidence 3445555677788899999999 8999988 4444 11111112222 1111 23333333332211 11 22
Q ss_pred HHHHHHHHhCChhHHHHHHHHHHHHHhhhhcccchhhhHHHHHHhhhccccccccCCCccccccCcccHHHHHHHHHHhh
Q 012143 80 LLGLMYQRLGQPLKAVSSYEKAEEILLRCEADIARPELLSLVQIHHAQCLLPESSGDNSLDKELEPEELEEILSKLKESM 159 (470)
Q Consensus 80 ~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~ 159 (470)
.+|.++...|.+++|...|+++-... .. ..++ +...+++++|+++++++
T Consensus 1054 eIA~Iai~lglyEEAf~IYkKa~~~~----------~A---~~VL-----------------ie~i~nldrAiE~Aerv- 1102 (1630)
T 1xi4_A 1054 DIANIAISNELFEEAFAIFRKFDVNT----------SA---VQVL-----------------IEHIGNLDRAYEFAERC- 1102 (1630)
T ss_pred HHHHHHHhCCCHHHHHHHHHHcCCHH----------HH---HHHH-----------------HHHHhhHHHHHHHHHhc-
Confidence 37999999999999999999974221 00 0111 12456789999998866
Q ss_pred hcCccchHHHHHHHHHHHHcCChHHHHHHHHHHhhcCCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCChHHHHH
Q 012143 160 QSDTRQAVVWNTLGLILLKSGRLQSSISVLSSLLAVDPNNCDCIGNLGIAYFQSGDMEQSAKCFQDLILKDQNHPAALIN 239 (470)
Q Consensus 160 ~~~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~ 239 (470)
+.+.+|+.+|.++...|++++|+..|.++ +++..+..+|.++.+.|++++|+++|..+.+..++. ..-..
T Consensus 1103 ----n~p~vWsqLAKAql~~G~~kEAIdsYiKA-----dD~say~eVa~~~~~lGkyEEAIeyL~mArk~~~e~-~Idt~ 1172 (1630)
T 1xi4_A 1103 ----NEPAVWSQLAKAQLQKGMVKEAIDSYIKA-----DDPSSYMEVVQAANTSGNWEELVKYLQMARKKARES-YVETE 1172 (1630)
T ss_pred ----CCHHHHHHHHHHHHhCCCHHHHHHHHHhc-----CChHHHHHHHHHHHHcCCHHHHHHHHHHHHhhcccc-cccHH
Confidence 56899999999999999999999999886 789999999999999999999999999999887542 11223
Q ss_pred HHHHHHhhhcc-----cc--cccccchhhhhHHHhcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCChhHHHHHH
Q 012143 240 YAALLLCKYGS-----VL--AGAGANTGEGACLDQASAVNVAKECLLAALKADPKAAHIWANLANAYYLTGDHRSSGKCL 312 (470)
Q Consensus 240 l~~~~~~~~~~-----~~--~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~la~~~~~~g~~~~A~~~~ 312 (470)
++.+|.....- .. .....+..+|..+...|++++|+.+|.++ ..|..+|.++.++|++++|++.+
T Consensus 1173 LafaYAKl~rleele~fI~~~n~ad~~~iGd~le~eg~YeeA~~~Y~kA--------~ny~rLA~tLvkLge~q~AIEaa 1244 (1630)
T 1xi4_A 1173 LIFALAKTNRLAELEEFINGPNNAHIQQVGDRCYDEKMYDAAKLLYNNV--------SNFGRLASTLVHLGEYQAAVDGA 1244 (1630)
T ss_pred HHHHHHhhcCHHHHHHHHhCCCHHHHHHHHHHHHhcCCHHHHHHHHHhh--------hHHHHHHHHHHHhCCHHHHHHHH
Confidence 45444421000 00 01122333455555555555555555543 24445555555555555555555
Q ss_pred HHHHhcCCCcccHHHHHHHHHHHHhhhccCchHHhhhhHHHHHHHhhcCCCCCCCcHHHHHHHHHHHhccccHHHHHHHH
Q 012143 313 EKAAKLEPNCMSTRYAVAVSRIKDAERSQEPTEQLSWAGNEMASILREGDPVQIEPPIAWAGFAAVQKTHHEVAAAFETE 392 (470)
Q Consensus 313 ~~a~~~~p~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~ 392 (470)
+++ .++.+|...+.+....|++..|....
T Consensus 1245 rKA---------------------------------------------------~n~~aWkev~~acve~~Ef~LA~~cg 1273 (1630)
T 1xi4_A 1245 RKA---------------------------------------------------NSTRTWKEVCFACVDGKEFRLAQMCG 1273 (1630)
T ss_pred HHh---------------------------------------------------CCHHHHHHHHHHHhhhhHHHHHHHHH
Confidence 544 12245555566666666666665554
Q ss_pred HHHhcchhhhhHhhHHHHHHHhccHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHH--cCChHHHHHHHHHHHH
Q 012143 393 ENELSKMEECAGAGESAFLDQASAVNVAKECLLAALKADPKAAHIWANLANAYYL--TGDHRSSGKCLEKVLM 463 (470)
Q Consensus 393 ~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~--~g~~~~A~~~~~~al~ 463 (470)
.. +. ..++.+..++..|...|.+++|+.++++++.++|.+...+..+|.+|.+ -++..++++.|...+.
T Consensus 1274 l~-Ii-v~~deLeeli~yYe~~G~feEAI~LlE~aL~LeraH~gmftELaiLyaKy~peklmEhlk~f~~rin 1344 (1630)
T 1xi4_A 1274 LH-IV-VHADELEELINYYQDRGYFEELITMLEAALGLERAHMGMFTELAILYSKFKPQKMREHLELFWSRVN 1344 (1630)
T ss_pred Hh-hh-cCHHHHHHHHHHHHHcCCHHHHHHHHHHHhccChhHhHHHHHHHHHHHhCCHHHHHHHHHHHHHhcc
Confidence 42 11 1122233555566666666666666666666666666666666665533 3444455555544443
|
| >3dra_A Protein farnesyltransferase/geranylgeranyltransferase type-1 subunit alpha; geranylgeranyltrasferase, ggtase, ggtase-I, PGGT, prenyltransferase, farnesyltransferase; HET: B3P GRG; 1.80A {Candida albicans} | Back alignment and structure |
|---|
Probab=99.88 E-value=1.2e-20 Score=163.93 Aligned_cols=231 Identities=11% Similarity=0.058 Sum_probs=179.6
Q ss_pred hhHHHHHHHHHHhCCCChhHHHHHHHHHHHhC--ChhHHHHHHHHHHHHHhhhhcccchhhhHHHHHHhhhccccc----
Q 012143 58 SSLKTGLVHVARKMPKNAHAHFLLGLMYQRLG--QPLKAVSSYEKAEEILLRCEADIARPELLSLVQIHHAQCLLP---- 131 (470)
Q Consensus 58 ~~A~~~~~~~l~~~p~~~~~~~~l~~~~~~~g--~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---- 131 (470)
++|...+.+++.++|++..+|+.++.+....| ++++++.++.+++..+|++. .+|+..+.++
T Consensus 50 ~~aL~~t~~~L~~nP~~~taWn~R~~~L~~l~~~~~~eeL~~~~~~L~~nPk~y------------~aW~~R~~iL~~~~ 117 (306)
T 3dra_A 50 ERALHITELGINELASHYTIWIYRFNILKNLPNRNLYDELDWCEEIALDNEKNY------------QIWNYRQLIIGQIM 117 (306)
T ss_dssp HHHHHHHHHHHHHCTTCHHHHHHHHHHHHTCTTSCHHHHHHHHHHHHHHCTTCC------------HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHCcHHHHHHHHHHHHHHHcccccHHHHHHHHHHHHHHCcccH------------HHHHHHHHHHHHHH
Confidence 45666666666666666666666666666666 66666666666666655532 1122222222
Q ss_pred cccCCCccccccCcccHHHHHHHHHHhhhcCccchHHHHHHHHHHHHcCChH--HHHHHHHHHhhcCCCChHHHHHHHHH
Q 012143 132 ESSGDNSLDKELEPEELEEILSKLKESMQSDTRQAVVWNTLGLILLKSGRLQ--SSISVLSSLLAVDPNNCDCIGNLGIA 209 (470)
Q Consensus 132 ~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~~~~~--~A~~~~~~a~~~~~~~~~~~~~la~~ 209 (470)
..++ ..+++++++..+.+++..+|.+..+|..++.+....|.++ ++++++.++++.+|.+..+|...+.+
T Consensus 118 ~~l~--------~~~~~~~EL~~~~~~l~~~pkny~aW~~R~~vl~~l~~~~~~~EL~~~~~~i~~d~~N~sAW~~R~~l 189 (306)
T 3dra_A 118 ELNN--------NDFDPYREFDILEAMLSSDPKNHHVWSYRKWLVDTFDLHNDAKELSFVDKVIDTDLKNNSAWSHRFFL 189 (306)
T ss_dssp HHTT--------TCCCTHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCTTCHHHHHHHHHHHHHCTTCHHHHHHHHHH
T ss_pred Hhcc--------ccCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcccChHHHHHHHHHHHHhCCCCHHHHHHHHHH
Confidence 1110 0134588889999999999999999999999999999999 99999999999999999999999999
Q ss_pred HHHcCC------HHHHHHHHHHHHhhCCCChHHHHHHHHHHHhhhcccccccccchhhhhHHHhcCC-HHHHHHHHHHHH
Q 012143 210 YFQSGD------MEQSAKCFQDLILKDQNHPAALINYAALLLCKYGSVLAGAGANTGEGACLDQASA-VNVAKECLLAAL 282 (470)
Q Consensus 210 ~~~~g~------~~~A~~~~~~~l~~~p~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~A~~~~~~~~ 282 (470)
....|. ++++++++.+++..+|.+..+|..++.++. ..|+ .+....++.+++
T Consensus 190 l~~l~~~~~~~~~~eEl~~~~~aI~~~p~n~SaW~y~~~ll~---------------------~~~~~~~~~~~~~~~~~ 248 (306)
T 3dra_A 190 LFSKKHLATDNTIDEELNYVKDKIVKCPQNPSTWNYLLGIHE---------------------RFDRSITQLEEFSLQFV 248 (306)
T ss_dssp HHSSGGGCCHHHHHHHHHHHHHHHHHCSSCHHHHHHHHHHHH---------------------HTTCCGGGGHHHHHTTE
T ss_pred HHhccccchhhhHHHHHHHHHHHHHhCCCCccHHHHHHHHHH---------------------hcCCChHHHHHHHHHHH
Confidence 999988 999999999999999999999999998887 4555 444556777777
Q ss_pred hcC---CCCHHHHHHHHHHHHHcCChhHHHHHHHHHHh-cCCCcccHHHHH
Q 012143 283 KAD---PKAAHIWANLANAYYLTGDHRSSGKCLEKAAK-LEPNCMSTRYAV 329 (470)
Q Consensus 283 ~~~---p~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~-~~p~~~~~~~~l 329 (470)
..+ |.++.++..++.++...|+.++|+++|+.+.. .+|-....|...
T Consensus 249 ~~~~~~~~s~~al~~la~~~~~~~~~~~A~~~~~~l~~~~Dpir~~yW~~~ 299 (306)
T 3dra_A 249 DLEKDQVTSSFALETLAKIYTQQKKYNESRTVYDLLKSKYNPIRSNFWDYQ 299 (306)
T ss_dssp EGGGTEESCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCGGGHHHHHHH
T ss_pred hccCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHhccChHHHHHHHHH
Confidence 766 88999999999999999999999999999996 799877766643
|
| >3dra_A Protein farnesyltransferase/geranylgeranyltransferase type-1 subunit alpha; geranylgeranyltrasferase, ggtase, ggtase-I, PGGT, prenyltransferase, farnesyltransferase; HET: B3P GRG; 1.80A {Candida albicans} | Back alignment and structure |
|---|
Probab=99.88 E-value=3.8e-20 Score=160.67 Aligned_cols=230 Identities=10% Similarity=0.027 Sum_probs=190.3
Q ss_pred HHHHHHHHHHhhhcCccchHHHHHHHHHHHHcC--ChHHHHHHHHHHhhcCCCChHHHHHHHHHH----HHc---CCHHH
Q 012143 148 LEEILSKLKESMQSDTRQAVVWNTLGLILLKSG--RLQSSISVLSSLLAVDPNNCDCIGNLGIAY----FQS---GDMEQ 218 (470)
Q Consensus 148 ~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~~--~~~~A~~~~~~a~~~~~~~~~~~~~la~~~----~~~---g~~~~ 218 (470)
.++|+..+.+++..+|++..+|..++.++...| ++++++..+.+++..+|++..+|...+.++ ... +++++
T Consensus 49 s~~aL~~t~~~L~~nP~~~taWn~R~~~L~~l~~~~~~eeL~~~~~~L~~nPk~y~aW~~R~~iL~~~~~~l~~~~~~~~ 128 (306)
T 3dra_A 49 SERALHITELGINELASHYTIWIYRFNILKNLPNRNLYDELDWCEEIALDNEKNYQIWNYRQLIIGQIMELNNNDFDPYR 128 (306)
T ss_dssp SHHHHHHHHHHHHHCTTCHHHHHHHHHHHHTCTTSCHHHHHHHHHHHHHHCTTCCHHHHHHHHHHHHHHHHTTTCCCTHH
T ss_pred CHHHHHHHHHHHHHCcHHHHHHHHHHHHHHHcccccHHHHHHHHHHHHHHCcccHHHHHHHHHHHHHHHHhccccCCHHH
Confidence 378999999999999999999999999999999 999999999999999999999999999999 777 78999
Q ss_pred HHHHHHHHHhhCCCChHHHHHHHHHHHhhhcccccccccchhhhhHHHhcCCHH--HHHHHHHHHHhcCCCCHHHHHHHH
Q 012143 219 SAKCFQDLILKDQNHPAALINYAALLLCKYGSVLAGAGANTGEGACLDQASAVN--VAKECLLAALKADPKAAHIWANLA 296 (470)
Q Consensus 219 A~~~~~~~l~~~p~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~A~~~~~~~~~~~p~~~~~~~~la 296 (470)
++..+.++++.+|.+..+|...+.++. ..|.++ ++++++.++++.+|.+..+|...+
T Consensus 129 EL~~~~~~l~~~pkny~aW~~R~~vl~---------------------~l~~~~~~~EL~~~~~~i~~d~~N~sAW~~R~ 187 (306)
T 3dra_A 129 EFDILEAMLSSDPKNHHVWSYRKWLVD---------------------TFDLHNDAKELSFVDKVIDTDLKNNSAWSHRF 187 (306)
T ss_dssp HHHHHHHHHHHCTTCHHHHHHHHHHHH---------------------HTTCTTCHHHHHHHHHHHHHCTTCHHHHHHHH
T ss_pred HHHHHHHHHHhCCCCHHHHHHHHHHHH---------------------HhcccChHHHHHHHHHHHHhCCCCHHHHHHHH
Confidence 999999999999999999999988887 577777 999999999999999999999999
Q ss_pred HHHHHcCC------hhHHHHHHHHHHhcCCCcccHHHHHHHHHHHHhhhccCchHHhhhhHHHHHHHhhcCCCCCCCcHH
Q 012143 297 NAYYLTGD------HRSSGKCLEKAAKLEPNCMSTRYAVAVSRIKDAERSQEPTEQLSWAGNEMASILREGDPVQIEPPI 370 (470)
Q Consensus 297 ~~~~~~g~------~~~A~~~~~~a~~~~p~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 370 (470)
.+....|. ++++++++++++..+|++..+|+.+.
T Consensus 188 ~ll~~l~~~~~~~~~~eEl~~~~~aI~~~p~n~SaW~y~~---------------------------------------- 227 (306)
T 3dra_A 188 FLLFSKKHLATDNTIDEELNYVKDKIVKCPQNPSTWNYLL---------------------------------------- 227 (306)
T ss_dssp HHHHSSGGGCCHHHHHHHHHHHHHHHHHCSSCHHHHHHHH----------------------------------------
T ss_pred HHHHhccccchhhhHHHHHHHHHHHHHhCCCCccHHHHHH----------------------------------------
Confidence 99999887 89999999999999999876665443
Q ss_pred HHHHHHHHHhccccHHHHHH-HHHHHhc-----chhhhhHhhHHHHHHHhccHHHHHHHHHHHHh-cCCCcHHHHHHHHH
Q 012143 371 AWAGFAAVQKTHHEVAAAFE-TEENELS-----KMEECAGAGESAFLDQASAVNVAKECLLAALK-ADPKAAHIWANLAN 443 (470)
Q Consensus 371 ~~~~l~~~~~~~~~~~~A~~-~~~~~~~-----~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~-~~p~~~~~~~~la~ 443 (470)
.++...|+..+++. ...+.+. +....++..++.++.+.|+.++|+++|+.+.+ .+|-....|...+.
T Consensus 228 ------~ll~~~~~~~~~~~~~~~~~~~~~~~~~~s~~al~~la~~~~~~~~~~~A~~~~~~l~~~~Dpir~~yW~~~~~ 301 (306)
T 3dra_A 228 ------GIHERFDRSITQLEEFSLQFVDLEKDQVTSSFALETLAKIYTQQKKYNESRTVYDLLKSKYNPIRSNFWDYQIS 301 (306)
T ss_dssp ------HHHHHTTCCGGGGHHHHHTTEEGGGTEESCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCGGGHHHHHHHHH
T ss_pred ------HHHHhcCCChHHHHHHHHHHHhccCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHhccChHHHHHHHHHHh
Confidence 33333333222222 2222111 33456677777788888888999999999886 78988888887765
Q ss_pred H
Q 012143 444 A 444 (470)
Q Consensus 444 ~ 444 (470)
.
T Consensus 302 ~ 302 (306)
T 3dra_A 302 K 302 (306)
T ss_dssp T
T ss_pred h
Confidence 4
|
| >3urz_A Uncharacterized protein; tetratricopeptide repeats (TPR) containing protein, structur genomics, joint center for structural genomics, JCSG; HET: PG4; 2.19A {Bacteroides ovatus} | Back alignment and structure |
|---|
Probab=99.87 E-value=6.7e-21 Score=158.60 Aligned_cols=189 Identities=12% Similarity=0.074 Sum_probs=149.9
Q ss_pred ChhHHHHHHHHHHHhCChhHHHHHHHHHHHHHhhhhcccchhhhHHHHHHhhhccccccccCCCccccccCcccHHHHHH
Q 012143 74 NAHAHFLLGLMYQRLGQPLKAVSSYEKAEEILLRCEADIARPELLSLVQIHHAQCLLPESSGDNSLDKELEPEELEEILS 153 (470)
Q Consensus 74 ~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~ 153 (470)
+++.++..|..+...|++++|+..|+++++.+|++.. +++..+. .
T Consensus 3 ~~~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~------------~~~~~~~-----~------------------ 47 (208)
T 3urz_A 3 SVDEMLQKVSAAIEAGQNGQAVSYFRQTIALNIDRTE------------MYYWTNV-----D------------------ 47 (208)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCHHHHH------------HHHHHHS-----C------------------
T ss_pred CHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCChH------------HHHHhhh-----c------------------
Confidence 4677888899999999999999999999998766421 1111110 0
Q ss_pred HHHHhhhcCccchHHHHHHHHHHHHcCChHHHHHHHHHHhhcCCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCC
Q 012143 154 KLKESMQSDTRQAVVWNTLGLILLKSGRLQSSISVLSSLLAVDPNNCDCIGNLGIAYFQSGDMEQSAKCFQDLILKDQNH 233 (470)
Q Consensus 154 ~~~~~~~~~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~ 233 (470)
......+.....+|.++...|++++|+..|+++++++|+++.++..+|.++...|++++|+..|+++++++|++
T Consensus 48 ------~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~P~~ 121 (208)
T 3urz_A 48 ------KNSEISSKLATELALAYKKNRNYDKAYLFYKELLQKAPNNVDCLEACAEMQVCRGQEKDALRMYEKILQLEADN 121 (208)
T ss_dssp ------TTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTC
T ss_pred ------chhhhhHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCC
Confidence 00111234556799999999999999999999999999999999999999999999999999999999999999
Q ss_pred hHHHHHHHHHHHhhhcccccccccchhhhhHHHhcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCChhHHHHHHH
Q 012143 234 PAALINYAALLLCKYGSVLAGAGANTGEGACLDQASAVNVAKECLLAALKADPKAAHIWANLANAYYLTGDHRSSGKCLE 313 (470)
Q Consensus 234 ~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~ 313 (470)
+.++..+|.++... ..++...+...+.+++...|. ..+++.+|.++...|++++|+.+|+
T Consensus 122 ~~a~~~lg~~~~~~-------------------~~~~~~~~~~~~~~~~~~~~~-~~a~~~~g~~~~~~~~~~~A~~~~~ 181 (208)
T 3urz_A 122 LAANIFLGNYYYLT-------------------AEQEKKKLETDYKKLSSPTKM-QYARYRDGLSKLFTTRYEKARNSLQ 181 (208)
T ss_dssp HHHHHHHHHHHHHH-------------------HHHHHHHHHHHHC---CCCHH-HHHHHHHHHHHHHHHTHHHHHHHHH
T ss_pred HHHHHHHHHHHHHH-------------------hHHHHHHHHHHHHHHhCCCch-hHHHHHHHHHHHHccCHHHHHHHHH
Confidence 99999999988632 223456677888887654332 4567889999999999999999999
Q ss_pred HHHhcCCCcc
Q 012143 314 KAAKLEPNCM 323 (470)
Q Consensus 314 ~a~~~~p~~~ 323 (470)
++++++|+..
T Consensus 182 ~al~l~P~~~ 191 (208)
T 3urz_A 182 KVILRFPSTE 191 (208)
T ss_dssp HHTTTSCCHH
T ss_pred HHHHhCCCHH
Confidence 9999999853
|
| >1hz4_A MALT regulatory protein; two-helix bundles, helix repeats, protein superhelix, transc activator; 1.45A {Escherichia coli} SCOP: a.118.8.2 | Back alignment and structure |
|---|
Probab=99.87 E-value=3.9e-20 Score=169.27 Aligned_cols=265 Identities=13% Similarity=0.012 Sum_probs=206.2
Q ss_pred cCcccHHHHHHHHHHhhhcCccch-----HHHHHHHHHHHHcCChHHHHHHHHHHhhcCCCCh------HHHHHHHHHHH
Q 012143 143 LEPEELEEILSKLKESMQSDTRQA-----VVWNTLGLILLKSGRLQSSISVLSSLLAVDPNNC------DCIGNLGIAYF 211 (470)
Q Consensus 143 ~~~~~~~~A~~~~~~~~~~~p~~~-----~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~------~~~~~la~~~~ 211 (470)
+..|++++|+..+++++...|... .++..+|.++...|++++|+..+++++...|... .++..+|.++.
T Consensus 25 ~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~ 104 (373)
T 1hz4_A 25 INDGNPDEAERLAKLALEELPPGWFYSRIVATSVLGEVLHCKGELTRSLALMQQTEQMARQHDVWHYALWSLIQQSEILF 104 (373)
T ss_dssp HHTTCHHHHHHHHHHHHHTCCTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHH
T ss_pred HHCCCHHHHHHHHHHHHHcCCCCchhHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHH
Confidence 456788999999999998877553 2678899999999999999999999998765432 34788999999
Q ss_pred HcCCHHHHHHHHHHHHhhCC--------CChHHHHHHHHHHHhhhcccccccccchhhhhHHHhcCCHHHHHHHHHHHHh
Q 012143 212 QSGDMEQSAKCFQDLILKDQ--------NHPAALINYAALLLCKYGSVLAGAGANTGEGACLDQASAVNVAKECLLAALK 283 (470)
Q Consensus 212 ~~g~~~~A~~~~~~~l~~~p--------~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~ 283 (470)
..|++++|+..+++++...+ .....+..++.++. ..|++++|+.++++++.
T Consensus 105 ~~G~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~---------------------~~g~~~~A~~~~~~al~ 163 (373)
T 1hz4_A 105 AQGFLQTAWETQEKAFQLINEQHLEQLPMHEFLVRIRAQLLW---------------------AWARLDEAEASARSGIE 163 (373)
T ss_dssp HTTCHHHHHHHHHHHHHHHHHTTCTTSTHHHHHHHHHHHHHH---------------------HTTCHHHHHHHHHHHHH
T ss_pred HCCCHHHHHHHHHHHHHHHHHhccccCcHHHHHHHHHHHHHH---------------------HhcCHHHHHHHHHHHHH
Confidence 99999999999999998753 22233444555554 79999999999999999
Q ss_pred cCCC-----CHHHHHHHHHHHHHcCChhHHHHHHHHHHhcCCCcccHHHHHHHHHHHHhhhccCchHHhhhhHHHHHHHh
Q 012143 284 ADPK-----AAHIWANLANAYYLTGDHRSSGKCLEKAAKLEPNCMSTRYAVAVSRIKDAERSQEPTEQLSWAGNEMASIL 358 (470)
Q Consensus 284 ~~p~-----~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~p~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 358 (470)
..|. ...++..+|.++...|++++|..++++++...+..........
T Consensus 164 ~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~l~~a~~~~~~~~~~~~~~~---------------------------- 215 (373)
T 1hz4_A 164 VLSSYQPQQQLQCLAMLIQCSLARGDLDNARSQLNRLENLLGNGKYHSDWIS---------------------------- 215 (373)
T ss_dssp HTTTSCGGGGHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHTTSCCCHHHHH----------------------------
T ss_pred HhhccCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhccCcchhHHH----------------------------
Confidence 8775 3467889999999999999999999999887443211100000
Q ss_pred hcCCCCCCCcHHHHHHHHHHHhccccHHHHHHHHHHHhcchhh------hhHhhHHHHHHHhccHHHHHHHHHHHHhcCC
Q 012143 359 REGDPVQIEPPIAWAGFAAVQKTHHEVAAAFETEENELSKMEE------CAGAGESAFLDQASAVNVAKECLLAALKADP 432 (470)
Q Consensus 359 ~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~------~~~~~l~~~~~~~~~~~~A~~~~~~al~~~p 432 (470)
......+.++...|++++|...+...+...+. ..+..+|.++...|++++|+..+++++...+
T Consensus 216 -----------~~~~~~~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~l~~a~~~~~ 284 (373)
T 1hz4_A 216 -----------NANKVRVIYWQMTGDKAAAANWLRHTAKPEFANNHFLQGQWRNIARAQILLGEFEPAEIVLEELNENAR 284 (373)
T ss_dssp -----------HHHHHHHHHHHHTTCHHHHHHHHHHSCCCCCTTCGGGHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHH
T ss_pred -----------HHHHHHHHHHHHCCCHHHHHHHHHhCCCCCCCcchhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHH
Confidence 11223445577889999999999886653322 2456788899999999999999999987644
Q ss_pred C------cHHHHHHHHHHHHHcCChHHHHHHHHHHHHhhcc
Q 012143 433 K------AAHIWANLANAYYLTGDHRSSGKCLEKVLMVYCS 467 (470)
Q Consensus 433 ~------~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~ 467 (470)
. ...++..+|.++...|++++|...|++++++.+.
T Consensus 285 ~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~l~~al~~~~~ 325 (373)
T 1hz4_A 285 SLRLMSDLNRNLLLLNQLYWQAGRKSDAQRVLLDALKLANR 325 (373)
T ss_dssp HTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHH
T ss_pred hCcchhhHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHhcc
Confidence 2 2357888999999999999999999999988753
|
| >1hz4_A MALT regulatory protein; two-helix bundles, helix repeats, protein superhelix, transc activator; 1.45A {Escherichia coli} SCOP: a.118.8.2 | Back alignment and structure |
|---|
Probab=99.87 E-value=3.1e-19 Score=163.27 Aligned_cols=313 Identities=12% Similarity=0.051 Sum_probs=232.2
Q ss_pred hhhhcccchhhhhcChhhHHHHHHHHHHhCCCChh-----HHHHHHHHHHHhCChhHHHHHHHHHHHHHhhhhcccchhh
Q 012143 42 DQSGLGTSSSSREEKVSSLKTGLVHVARKMPKNAH-----AHFLLGLMYQRLGQPLKAVSSYEKAEEILLRCEADIARPE 116 (470)
Q Consensus 42 ~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~p~~~~-----~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~ 116 (470)
.+..+|.+ +...|++++|...+++++...|.+.. ++..+|.++...|++++|+..+++++...|....
T Consensus 16 ~~~~~a~~-~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~------ 88 (373)
T 1hz4_A 16 FNALRAQV-AINDGNPDEAERLAKLALEELPPGWFYSRIVATSVLGEVLHCKGELTRSLALMQQTEQMARQHDV------ 88 (373)
T ss_dssp HHHHHHHH-HHHTTCHHHHHHHHHHHHHTCCTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTC------
T ss_pred HHHHHHHH-HHHCCCHHHHHHHHHHHHHcCCCCchhHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHhcCc------
Confidence 34567777 88999999999999999998876532 6788999999999999999999999998766322
Q ss_pred hHHHHHHhhhccccccccCCCccccccCcccHHHHHHHHHHhhhcC--------ccchHHHHHHHHHHHHcCChHHHHHH
Q 012143 117 LLSLVQIHHAQCLLPESSGDNSLDKELEPEELEEILSKLKESMQSD--------TRQAVVWNTLGLILLKSGRLQSSISV 188 (470)
Q Consensus 117 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~--------p~~~~~~~~l~~~~~~~~~~~~A~~~ 188 (470)
......++..++.++ ...|++++|+..+++++... |....++..+|.++...|++++|..+
T Consensus 89 ~~~~~~~~~~la~~~-----------~~~G~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~ 157 (373)
T 1hz4_A 89 WHYALWSLIQQSEIL-----------FAQGFLQTAWETQEKAFQLINEQHLEQLPMHEFLVRIRAQLLWAWARLDEAEAS 157 (373)
T ss_dssp HHHHHHHHHHHHHHH-----------HHTTCHHHHHHHHHHHHHHHHHTTCTTSTHHHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred HHHHHHHHHHHHHHH-----------HHCCCHHHHHHHHHHHHHHHHHhccccCcHHHHHHHHHHHHHHHhcCHHHHHHH
Confidence 222233444455443 45677899999999998865 34556788899999999999999999
Q ss_pred HHHHhhcCCCC-----hHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCC--ChHHHHHHHHHHHhhhcccccccccchhh
Q 012143 189 LSSLLAVDPNN-----CDCIGNLGIAYFQSGDMEQSAKCFQDLILKDQN--HPAALINYAALLLCKYGSVLAGAGANTGE 261 (470)
Q Consensus 189 ~~~a~~~~~~~-----~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~--~~~~~~~l~~~~~~~~~~~~~~~~~~~~~ 261 (470)
+++++...|.. ..++..+|.++...|++++|...+++++.+.+. .+..+....... .
T Consensus 158 ~~~al~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~l~~a~~~~~~~~~~~~~~~~~~~~----------------~ 221 (373)
T 1hz4_A 158 ARSGIEVLSSYQPQQQLQCLAMLIQCSLARGDLDNARSQLNRLENLLGNGKYHSDWISNANKV----------------R 221 (373)
T ss_dssp HHHHHHHTTTSCGGGGHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHTTSCCCHHHHHHHHHH----------------H
T ss_pred HHHHHHHhhccCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhccCcchhHHHHHHHH----------------H
Confidence 99999987653 457889999999999999999999999977432 222222111000 1
Q ss_pred hhHHHhcCCHHHHHHHHHHHHhcCCCC----HHHHHHHHHHHHHcCChhHHHHHHHHHHhcCCCcccHHHHHHHHHHHHh
Q 012143 262 GACLDQASAVNVAKECLLAALKADPKA----AHIWANLANAYYLTGDHRSSGKCLEKAAKLEPNCMSTRYAVAVSRIKDA 337 (470)
Q Consensus 262 ~~~~~~~~~~~~A~~~~~~~~~~~p~~----~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~p~~~~~~~~l~~~~~~~~ 337 (470)
+.++...|++++|..++++++...|.. ...+..+|.++...|++++|...+++++...+.......
T Consensus 222 ~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~l~~a~~~~~~~~~~~~---------- 291 (373)
T 1hz4_A 222 VIYWQMTGDKAAAANWLRHTAKPEFANNHFLQGQWRNIARAQILLGEFEPAEIVLEELNENARSLRLMSD---------- 291 (373)
T ss_dssp HHHHHHTTCHHHHHHHHHHSCCCCCTTCGGGHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHH----------
T ss_pred HHHHHHCCCHHHHHHHHHhCCCCCCCcchhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhCcchhh----------
Confidence 233457999999999999999877653 336788999999999999999999999876544221110
Q ss_pred hhccCchHHhhhhHHHHHHHhhcCCCCCCCcHHHHHHHHHHHhccccHHHHHHHHHHHhcchhhhhHhhHHHHHHHhccH
Q 012143 338 ERSQEPTEQLSWAGNEMASILREGDPVQIEPPIAWAGFAAVQKTHHEVAAAFETEENELSKMEECAGAGESAFLDQASAV 417 (470)
Q Consensus 338 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~l~~~~~~~~~~ 417 (470)
...++..++.++...|++++|...+.+.+...... +....+...|
T Consensus 292 ------------------------------~~~~~~~la~~~~~~g~~~~A~~~l~~al~~~~~~---g~~~~~~~~g-- 336 (373)
T 1hz4_A 292 ------------------------------LNRNLLLLNQLYWQAGRKSDAQRVLLDALKLANRT---GFISHFVIEG-- 336 (373)
T ss_dssp ------------------------------HHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHH---CCCHHHHTTH--
T ss_pred ------------------------------HHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHhccc---cHHHHHHHcc--
Confidence 12356778888888999999999888866533321 1112344444
Q ss_pred HHHHHHHHHHHhcCCC
Q 012143 418 NVAKECLLAALKADPK 433 (470)
Q Consensus 418 ~~A~~~~~~al~~~p~ 433 (470)
+.....+++.+...|-
T Consensus 337 ~~~~~ll~~~~~~~~~ 352 (373)
T 1hz4_A 337 EAMAQQLRQLIQLNTL 352 (373)
T ss_dssp HHHHHHHHHHHHTTCS
T ss_pred HHHHHHHHHHHhCCCC
Confidence 5667777888877775
|
| >2pzi_A Probable serine/threonine-protein kinase PKNG; ATP-recognition, kinase-INH complex, rubredoxin fold, TPR domain, transferase; HET: AXX; 2.40A {Mycobacterium tuberculosis} | Back alignment and structure |
|---|
Probab=99.87 E-value=5.2e-21 Score=187.79 Aligned_cols=187 Identities=11% Similarity=-0.023 Sum_probs=147.1
Q ss_pred cCCCCcchhhhcccchhhhhcChhhHHHHHHHHH--------HhCCCChhHHHHHHHHHHHhCChhHHHHHHHHHHHHHh
Q 012143 35 FGVDADGDQSGLGTSSSSREEKVSSLKTGLVHVA--------RKMPKNAHAHFLLGLMYQRLGQPLKAVSSYEKAEEILL 106 (470)
Q Consensus 35 ~~p~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~l--------~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~ 106 (470)
.+|+++..++..| ...|++++|+..+++++ +.+|+++.+++.+|.++...|++++|+..|+++++.
T Consensus 389 ~~p~~~~a~~~~a----~~~~~~~~A~~~~~~al~~~~~~~~~~~p~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~-- 462 (681)
T 2pzi_A 389 VDPTDVAASVLQA----TVLSQPVQTLDSLRAARHGALDADGVDFSESVELPLMEVRALLDLGDVAKATRKLDDLAER-- 462 (681)
T ss_dssp CCTTSTTHHHHHH----TTTCCHHHHHHHHHHHHTC-------CCTTCSHHHHHHHHHHHHHTCHHHHHHHHHHHHHH--
T ss_pred CCCCCcchHHhhc----ccccCHHHHHHHHHHhhhhcccccccccccchhHHHHHHHHHHhcCCHHHHHHHHHHHhcc--
Confidence 4555555555443 34566666666666666 666666666666666666666666666666665554
Q ss_pred hhhcccchhhhHHHHHHhhhccccccccCCCccccccCcccHHHHHHHHHHhhhcCccchHHHHHHHHHHHHcCChHHHH
Q 012143 107 RCEADIARPELLSLVQIHHAQCLLPESSGDNSLDKELEPEELEEILSKLKESMQSDTRQAVVWNTLGLILLKSGRLQSSI 186 (470)
Q Consensus 107 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~~~~~~A~ 186 (470)
+|+++.+++.+|.++...|++++|+
T Consensus 463 -------------------------------------------------------~p~~~~a~~~lg~~~~~~g~~~~A~ 487 (681)
T 2pzi_A 463 -------------------------------------------------------VGWRWRLVWYRAVAELLTGDYDSAT 487 (681)
T ss_dssp -------------------------------------------------------HCCCHHHHHHHHHHHHHHTCHHHHH
T ss_pred -------------------------------------------------------CcchHHHHHHHHHHHHHcCCHHHHH
Confidence 6777889999999999999999999
Q ss_pred HHHHHHhhcCCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCChHHHHHHHHHHHhhhcccccccccchhhhhHHH
Q 012143 187 SVLSSLLAVDPNNCDCIGNLGIAYFQSGDMEQSAKCFQDLILKDQNHPAALINYAALLLCKYGSVLAGAGANTGEGACLD 266 (470)
Q Consensus 187 ~~~~~a~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~ 266 (470)
..|+++++++|+++.++..+|.++..+|++++ +..|+++++++|++..+++++|.++.
T Consensus 488 ~~~~~al~l~P~~~~~~~~lg~~~~~~g~~~~-~~~~~~al~~~P~~~~a~~~lg~~~~--------------------- 545 (681)
T 2pzi_A 488 KHFTEVLDTFPGELAPKLALAATAELAGNTDE-HKFYQTVWSTNDGVISAAFGLARARS--------------------- 545 (681)
T ss_dssp HHHHHHHHHSTTCSHHHHHHHHHHHHHTCCCT-TCHHHHHHHHCTTCHHHHHHHHHHHH---------------------
T ss_pred HHHHHHHHhCCCChHHHHHHHHHHHHcCChHH-HHHHHHHHHhCCchHHHHHHHHHHHH---------------------
Confidence 99999999999999999999999999999999 99999999999999999998888887
Q ss_pred hcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCC
Q 012143 267 QASAVNVAKECLLAALKADPKAAHIWANLANAYYLTGD 304 (470)
Q Consensus 267 ~~~~~~~A~~~~~~~~~~~p~~~~~~~~la~~~~~~g~ 304 (470)
..|++++|+..|+++++++|++..++.++|.++...++
T Consensus 546 ~~g~~~~A~~~~~~al~l~P~~~~a~~~~~~~~~~~~~ 583 (681)
T 2pzi_A 546 AEGDRVGAVRTLDEVPPTSRHFTTARLTSAVTLLSGRS 583 (681)
T ss_dssp HTTCHHHHHHHHHTSCTTSTTHHHHHHHHHHHTC----
T ss_pred HcCCHHHHHHHHHhhcccCcccHHHHHHHHHHHHccCC
Confidence 68999999999999999999999999999999877665
|
| >3edt_B KLC 2, kinesin light chain 2; superhelical, structural genomics, structural genomics conso SGC, microtubule, motor protein, phosphoprotein; 2.70A {Homo sapiens} PDB: 3ceq_A | Back alignment and structure |
|---|
Probab=99.87 E-value=7.8e-22 Score=173.10 Aligned_cols=238 Identities=14% Similarity=0.154 Sum_probs=173.5
Q ss_pred CcccHHHHHHHHHHhhh--------cCccchHHHHHHHHHHHHcCChHHHHHHHHHHhhc--------CCCChHHHHHHH
Q 012143 144 EPEELEEILSKLKESMQ--------SDTRQAVVWNTLGLILLKSGRLQSSISVLSSLLAV--------DPNNCDCIGNLG 207 (470)
Q Consensus 144 ~~~~~~~A~~~~~~~~~--------~~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~--------~~~~~~~~~~la 207 (470)
..|++++|+..|++++. ..|..+.++..+|.++...|++++|+.+|+++++. .|....++..+|
T Consensus 13 ~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~l~ 92 (283)
T 3edt_B 13 GLVPRGSAVPLCKQALEDLEKTSGHDHPDVATMLNILALVYRDQNKYKEAAHLLNDALAIREKTLGKDHPAVAATLNNLA 92 (283)
T ss_dssp CCSCSSSHHHHHHHHHHHHHHHHCSSSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCTTCHHHHHHHHHHH
T ss_pred CCCCHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHcCCcchHHHHHHHHHH
Confidence 45566777777777766 23677889999999999999999999999999987 355677999999
Q ss_pred HHHHHcCCHHHHHHHHHHHHhh--------CCCChHHHHHHHHHHHhhhcccccccccchhhhhHHHhcCCHHHHHHHHH
Q 012143 208 IAYFQSGDMEQSAKCFQDLILK--------DQNHPAALINYAALLLCKYGSVLAGAGANTGEGACLDQASAVNVAKECLL 279 (470)
Q Consensus 208 ~~~~~~g~~~~A~~~~~~~l~~--------~p~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~ 279 (470)
.++...|++++|+..|++++.. +|....++..+|.++. ..|++++|+.+++
T Consensus 93 ~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~---------------------~~g~~~~A~~~~~ 151 (283)
T 3edt_B 93 VLYGKRGKYKEAEPLCKRALEIREKVLGKFHPDVAKQLNNLALLCQ---------------------NQGKAEEVEYYYR 151 (283)
T ss_dssp HHHHTTTCHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHH---------------------TTTCHHHHHHHHH
T ss_pred HHHHHhccHHHHHHHHHHHHHHHHHHcCCCChHHHHHHHHHHHHHH---------------------HcCCHHHHHHHHH
Confidence 9999999999999999999987 3555556666666665 7999999999999
Q ss_pred HHHhc--------CCCCHHHHHHHHHHHHHcCChhHHHHHHHHHHhcCCCcccHHHHHHHHHHHHhhhccCchHHhhhhH
Q 012143 280 AALKA--------DPKAAHIWANLANAYYLTGDHRSSGKCLEKAAKLEPNCMSTRYAVAVSRIKDAERSQEPTEQLSWAG 351 (470)
Q Consensus 280 ~~~~~--------~p~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~p~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~ 351 (470)
++++. .|....++..+|.++...|++++|+.++++++...|....
T Consensus 152 ~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~~~~~~--------------------------- 204 (283)
T 3edt_B 152 RALEIYATRLGPDDPNVAKTKNNLASCYLKQGKYQDAETLYKEILTRAHEKEF--------------------------- 204 (283)
T ss_dssp HHHHHHHHHSCTTCHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHS---------------------------
T ss_pred HHHHHHHHhcCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcC---------------------------
Confidence 99998 7777889999999999999999999999999987543110
Q ss_pred HHHHHHhhcCCCCCCCcHHHHHHHHHHHhccccHHHHHHHHHHHhcchhhhhHhhHHHHHHHhccHHHHHHHHHHHHhcC
Q 012143 352 NEMASILREGDPVQIEPPIAWAGFAAVQKTHHEVAAAFETEENELSKMEECAGAGESAFLDQASAVNVAKECLLAALKAD 431 (470)
Q Consensus 352 ~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~ 431 (470)
....+.....|..++......+.... ...+.++...++......
T Consensus 205 ----------~~~~~~~~~~~~~~~~~~~~~~~~~~--------------------------~~~~~~~~~~~~~~~~~~ 248 (283)
T 3edt_B 205 ----------GSVNGDNKPIWMHAEEREESKDKRRD--------------------------SAPYGEYGSWYKACKVDS 248 (283)
T ss_dssp ----------SSCCSSCCCHHHHHHHHHHTTCCCCC--------------------------------------CCCCCC
T ss_pred ----------CCcchhHHHHHHHHHHHHhcCCchhH--------------------------HHHHHHHHHHHHhcCCCC
Confidence 00011112233333333332222211 122445555555555566
Q ss_pred CCcHHHHHHHHHHHHHcCChHHHHHHHHHHHHhh
Q 012143 432 PKAAHIWANLANAYYLTGDHRSSGKCLEKVLMVY 465 (470)
Q Consensus 432 p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~ 465 (470)
|..+.++..+|.+|...|++++|+.+|++++++.
T Consensus 249 ~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~ 282 (283)
T 3edt_B 249 PTVNTTLRSLGALYRRQGKLEAAHTLEDCASRNR 282 (283)
T ss_dssp HHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTC
T ss_pred HHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhh
Confidence 7778888899999999999999999999888753
|
| >3q15_A PSP28, response regulator aspartate phosphatase H; tetratricopeptide repeat, 3-helix bundle, phosphorelay signa transduction, phosphatase; 2.19A {Bacillus subtilis} | Back alignment and structure |
|---|
Probab=99.87 E-value=4.5e-20 Score=169.02 Aligned_cols=307 Identities=13% Similarity=0.055 Sum_probs=215.0
Q ss_pred hhhhcChhhHHHHHHHHHHhCC---CChhHHHHHHHHH----HHhCChhHHH---------HHHHHHHHHHhhhhcccch
Q 012143 51 SSREEKVSSLKTGLVHVARKMP---KNAHAHFLLGLMY----QRLGQPLKAV---------SSYEKAEEILLRCEADIAR 114 (470)
Q Consensus 51 ~~~~~~~~~A~~~~~~~l~~~p---~~~~~~~~l~~~~----~~~g~~~~A~---------~~~~~al~~~~~~~~~~~~ 114 (470)
....+++++|...++++.+..+ .+...+...+... ...+.+..+. ..++++-.. +.+
T Consensus 22 ~i~~~~~~~A~~l~~~i~~~~~~~~~~~~~~~yy~l~~~r~~~~~~~~~~~~~~~~~~~~~~~l~~i~~~-~~~------ 94 (378)
T 3q15_A 22 MIRQFSVPDAEILKAEVEQDIQQMEEDQDLLIYYSLMCFRHQLMLDYLEPGKTYGNRPTVTELLETIETP-QKK------ 94 (378)
T ss_dssp HHHTTCHHHHHHHHHHHHHHGGGBCCCHHHHHHHHHHHHHHHHHHHTCCC--------CHHHHHHHHHGG-GHH------
T ss_pred HHHHcCHHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHHhhcCcccccccccchHHHHHHHhcc-CCC------
Confidence 3567888999999988755332 3444443332222 2234444444 555443221 111
Q ss_pred hhhHHHHHHhhhccccccccCCCccccccCcccHHHHHHHHHHhhhcC------ccchHHHHHHHHHHHHcCChHHHHHH
Q 012143 115 PELLSLVQIHHAQCLLPESSGDNSLDKELEPEELEEILSKLKESMQSD------TRQAVVWNTLGLILLKSGRLQSSISV 188 (470)
Q Consensus 115 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~------p~~~~~~~~l~~~~~~~~~~~~A~~~ 188 (470)
.+.......++..|.. +...|++++|+..|++++... |..+.++..+|.++...|++++|+.+
T Consensus 95 ~~~~l~~~~~~~~g~~-----------~~~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~lg~~y~~~~~~~~A~~~ 163 (378)
T 3q15_A 95 LTGLLKYYSLFFRGMY-----------EFDQKEYVEAIGYYREAEKELPFVSDDIEKAEFHFKVAEAYYHMKQTHVSMYH 163 (378)
T ss_dssp HHHHHHHHHHHHHHHH-----------HHHTTCHHHHHHHHHHHHTTGGGCCCHHHHHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred CccHHHHHHHHHHHHH-----------HHHHCCHHHHHHHHHHHHHHHhhCCChHHHHHHHHHHHHHHHHcCCcHHHHHH
Confidence 0111111233344443 356678899999999998763 34567899999999999999999999
Q ss_pred HHHHhhcCCC-------ChHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCChHHHHHHHHHHHhhhcccccccccchhh
Q 012143 189 LSSLLAVDPN-------NCDCIGNLGIAYFQSGDMEQSAKCFQDLILKDQNHPAALINYAALLLCKYGSVLAGAGANTGE 261 (470)
Q Consensus 189 ~~~a~~~~~~-------~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~ 261 (470)
+++++++.+. ...++..+|.++...|++++|+..|++++.+.+...... ..+.++. .+
T Consensus 164 ~~~al~~~~~~~~~~~~~~~~~~~lg~~y~~~~~~~~A~~~~~~al~~~~~~~~~~-~~~~~~~--------------~l 228 (378)
T 3q15_A 164 ILQALDIYQNHPLYSIRTIQSLFVIAGNYDDFKHYDKALPHLEAALELAMDIQNDR-FIAISLL--------------NI 228 (378)
T ss_dssp HHHHHHHHHTSTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHH-HHHHHHH--------------HH
T ss_pred HHHHHHHHHhCCCchhhHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHcCCHH-HHHHHHH--------------HH
Confidence 9999987443 245788999999999999999999999998754221111 1122221 24
Q ss_pred hhHHHhcCCHHHHHHHHHHHHh-----cCCCCHHHHHHHHHHHHHcCChhHHHHHHHHHHhcCCCcccHHHHHHHHHHHH
Q 012143 262 GACLDQASAVNVAKECLLAALK-----ADPKAAHIWANLANAYYLTGDHRSSGKCLEKAAKLEPNCMSTRYAVAVSRIKD 336 (470)
Q Consensus 262 ~~~~~~~~~~~~A~~~~~~~~~-----~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~p~~~~~~~~l~~~~~~~ 336 (470)
|.++...|++++|+.+|++++. .+|..+.++..+|.++...|++++|+.++++++.+.+......+
T Consensus 229 g~~y~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~--------- 299 (378)
T 3q15_A 229 ANSYDRSGDDQMAVEHFQKAAKVSREKVPDLLPKVLFGLSWTLCKAGQTQKAFQFIEEGLDHITARSHKFY--------- 299 (378)
T ss_dssp HHHHHHHTCHHHHHHHHHHHHHHHHHHCGGGHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCTTCCSCH---------
T ss_pred HHHHHHCCCHHHHHHHHHHHHHHHHhhCChhHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHcCCHHH---------
Confidence 5555689999999999999999 78888999999999999999999999999999998766332111
Q ss_pred hhhccCchHHhhhhHHHHHHHhhcCCCCCCCcHHHHHHHHHHHhcccc---HHHHHHHHHHHhc-chhhhhHhhHHHHHH
Q 012143 337 AERSQEPTEQLSWAGNEMASILREGDPVQIEPPIAWAGFAAVQKTHHE---VAAAFETEENELS-KMEECAGAGESAFLD 412 (470)
Q Consensus 337 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~---~~~A~~~~~~~~~-~~~~~~~~~l~~~~~ 412 (470)
...+..++.++...++ +.+|+..+.+.-. +.....+..+|.++.
T Consensus 300 --------------------------------~~~~~~l~~ly~~~~~~~~~~~al~~~~~~~~~~~~~~~~~~la~~y~ 347 (378)
T 3q15_A 300 --------------------------------KELFLFLQAVYKETVDERKIHDLLSYFEKKNLHAYIEACARSAAAVFE 347 (378)
T ss_dssp --------------------------------HHHHHHHHHHHSSSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHH
T ss_pred --------------------------------HHHHHHHHHHHhCCCcHHHHHHHHHHHHhCCChhHHHHHHHHHHHHHH
Confidence 1133456666777776 7888888777332 334466779999999
Q ss_pred HhccHHHHHHHHHHHHhcC
Q 012143 413 QASAVNVAKECLLAALKAD 431 (470)
Q Consensus 413 ~~~~~~~A~~~~~~al~~~ 431 (470)
..|++++|+.+|+++++..
T Consensus 348 ~~g~~~~A~~~~~~al~~~ 366 (378)
T 3q15_A 348 SSCHFEQAAAFYRKVLKAQ 366 (378)
T ss_dssp HTTCHHHHHHHHHHHHHHH
T ss_pred HCCCHHHHHHHHHHHHHHH
Confidence 9999999999999998754
|
| >1qqe_A Vesicular transport protein SEC17; helix-turn-helix TPR-like repeat, protein transport; 2.90A {Saccharomyces cerevisiae} SCOP: a.118.8.1 | Back alignment and structure |
|---|
Probab=99.87 E-value=3.8e-21 Score=169.20 Aligned_cols=218 Identities=14% Similarity=0.051 Sum_probs=162.0
Q ss_pred ChhhHHHHHHHHHHhCCCChhHHHHHHHHHHHhCChhHHHHHHHHHHHHHhhhhcccchhhhHHHHHHhhhccccccccC
Q 012143 56 KVSSLKTGLVHVARKMPKNAHAHFLLGLMYQRLGQPLKAVSSYEKAEEILLRCEADIARPELLSLVQIHHAQCLLPESSG 135 (470)
Q Consensus 56 ~~~~A~~~~~~~l~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 135 (470)
++++|...|.++ |.+|...|++++|+..|++++.+.+... +....+.++..+|.++
T Consensus 32 ~~~~A~~~~~~a--------------~~~~~~~g~~~~A~~~~~~al~~~~~~~------~~~~~a~~~~~lg~~~---- 87 (292)
T 1qqe_A 32 KFEEAADLCVQA--------------ATIYRLRKELNLAGDSFLKAADYQKKAG------NEDEAGNTYVEAYKCF---- 87 (292)
T ss_dssp HHHHHHHHHHHH--------------HHHHHHTTCTHHHHHHHHHHHHHHHHTT------CHHHHHHHHHHHHHHH----
T ss_pred cHHHHHHHHHHH--------------HHHHHHcCCHHHHHHHHHHHHHHHHHhC------CHHHHHHHHHHHHHHH----
Confidence 477777777765 5677778888888888888888765421 1122334555555554
Q ss_pred CCccccccCcccHHHHHHHHHHhhhcCccc------hHHHHHHHHHHHHc-CChHHHHHHHHHHhhcCCCC------hHH
Q 012143 136 DNSLDKELEPEELEEILSKLKESMQSDTRQ------AVVWNTLGLILLKS-GRLQSSISVLSSLLAVDPNN------CDC 202 (470)
Q Consensus 136 ~~~~~~~~~~~~~~~A~~~~~~~~~~~p~~------~~~~~~l~~~~~~~-~~~~~A~~~~~~a~~~~~~~------~~~ 202 (470)
...|++++|+..|++++...|.. ..++..+|.+|... |++++|+.+|++++++.|.. ..+
T Consensus 88 -------~~~g~~~~A~~~~~~Al~l~~~~g~~~~~a~~~~~lg~~~~~~lg~~~~A~~~~~~Al~~~~~~~~~~~~~~~ 160 (292)
T 1qqe_A 88 -------KSGGNSVNAVDSLENAIQIFTHRGQFRRGANFKFELGEILENDLHDYAKAIDCYELAGEWYAQDQSVALSNKC 160 (292)
T ss_dssp -------HHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred -------HHCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHhCCChHHHHHH
Confidence 34455688888888888776643 45888999999996 99999999999999997754 467
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHhhCCCChHH-------HHHHHHHHHhhhcccccccccchhhhhHHHhcCCHHHHH
Q 012143 203 IGNLGIAYFQSGDMEQSAKCFQDLILKDQNHPAA-------LINYAALLLCKYGSVLAGAGANTGEGACLDQASAVNVAK 275 (470)
Q Consensus 203 ~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~-------~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~ 275 (470)
+..+|.++..+|++++|+..|++++.+.|.+... +..+|.++ ...|++++|+
T Consensus 161 ~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~lg~~~---------------------~~~g~~~~A~ 219 (292)
T 1qqe_A 161 FIKCADLKALDGQYIEASDIYSKLIKSSMGNRLSQWSLKDYFLKKGLCQ---------------------LAATDAVAAA 219 (292)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHTTSSCTTTGGGHHHHHHHHHHHH---------------------HHTTCHHHHH
T ss_pred HHHHHHHHHHhCCHHHHHHHHHHHHHHHhcCCcccHHHHHHHHHHHHHH---------------------HHcCCHHHHH
Confidence 8999999999999999999999999999887542 34444444 4899999999
Q ss_pred HHHHHHHhcCCCCHHH-----HHHHHHHHH--HcCChhHHHHHHHHHHhcCCCcccH
Q 012143 276 ECLLAALKADPKAAHI-----WANLANAYY--LTGDHRSSGKCLEKAAKLEPNCMST 325 (470)
Q Consensus 276 ~~~~~~~~~~p~~~~~-----~~~la~~~~--~~g~~~~A~~~~~~a~~~~p~~~~~ 325 (470)
.+|+++++++|+.... +..++..+. ..+++++|+..|++++.++|.....
T Consensus 220 ~~~~~al~l~p~~~~~~~~~~l~~l~~~~~~~~~~~~~~A~~~~~~~~~l~~~~~~~ 276 (292)
T 1qqe_A 220 RTLQEGQSEDPNFADSRESNFLKSLIDAVNEGDSEQLSEHCKEFDNFMRLDKWKITI 276 (292)
T ss_dssp HHHHGGGCC---------HHHHHHHHHHHHTTCTTTHHHHHHHHTTSSCCCHHHHHH
T ss_pred HHHHHHHhhCCCCCCcHHHHHHHHHHHHHHcCCHHHHHHHHHHhccCCccHHHHHHH
Confidence 9999999999986553 445566554 4577999999999999988876433
|
| >3urz_A Uncharacterized protein; tetratricopeptide repeats (TPR) containing protein, structur genomics, joint center for structural genomics, JCSG; HET: PG4; 2.19A {Bacteroides ovatus} | Back alignment and structure |
|---|
Probab=99.86 E-value=1e-20 Score=157.45 Aligned_cols=180 Identities=14% Similarity=0.096 Sum_probs=106.2
Q ss_pred chHHHHHHHHHHHHcCChHHHHHHHHHHhhcCCCChHHHHH----------------HHHHHHHcCCHHHHHHHHHHHHh
Q 012143 165 QAVVWNTLGLILLKSGRLQSSISVLSSLLAVDPNNCDCIGN----------------LGIAYFQSGDMEQSAKCFQDLIL 228 (470)
Q Consensus 165 ~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~----------------la~~~~~~g~~~~A~~~~~~~l~ 228 (470)
.++.++..|..+...|++++|+..|+++++.+|+++.+++. +|.++...|++++|+..|+++++
T Consensus 3 ~~~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~ 82 (208)
T 3urz_A 3 SVDEMLQKVSAAIEAGQNGQAVSYFRQTIALNIDRTEMYYWTNVDKNSEISSKLATELALAYKKNRNYDKAYLFYKELLQ 82 (208)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCHHHHHHHHHHHSCTTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCChHHHHHhhhcchhhhhHHHHHHHHHHHHHCCCHHHHHHHHHHHHH
Confidence 35567777888888888888888888888888887777777 55555555555555555555555
Q ss_pred hCCCChHHHHHHHHHHHhhhcccccccccchhhhhHHHhcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCChhHH
Q 012143 229 KDQNHPAALINYAALLLCKYGSVLAGAGANTGEGACLDQASAVNVAKECLLAALKADPKAAHIWANLANAYYLTGDHRSS 308 (470)
Q Consensus 229 ~~p~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~la~~~~~~g~~~~A 308 (470)
++|+++.++..+|.++. ..|++++|+.+|+++++++|+++.++..+|.+|+..|+.+
T Consensus 83 ~~p~~~~~~~~lg~~~~---------------------~~g~~~~A~~~~~~al~~~P~~~~a~~~lg~~~~~~~~~~-- 139 (208)
T 3urz_A 83 KAPNNVDCLEACAEMQV---------------------CRGQEKDALRMYEKILQLEADNLAANIFLGNYYYLTAEQE-- 139 (208)
T ss_dssp HCTTCHHHHHHHHHHHH---------------------HHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHHHH--
T ss_pred HCCCCHHHHHHHHHHHH---------------------HcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHhHHH--
Confidence 55555555444444444 3445555555555555555555555555555444433211
Q ss_pred HHHHHHHHhcCCCcccHHHHHHHHHHHHhhhccCchHHhhhhHHHHHHHhhcCCCCCCCcHHHHHHHHHHHhccccHHHH
Q 012143 309 GKCLEKAAKLEPNCMSTRYAVAVSRIKDAERSQEPTEQLSWAGNEMASILREGDPVQIEPPIAWAGFAAVQKTHHEVAAA 388 (470)
Q Consensus 309 ~~~~~~a~~~~p~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A 388 (470)
...+
T Consensus 140 ----------------------------------------------------------------------------~~~~ 143 (208)
T 3urz_A 140 ----------------------------------------------------------------------------KKKL 143 (208)
T ss_dssp ----------------------------------------------------------------------------HHHH
T ss_pred ----------------------------------------------------------------------------HHHH
Confidence 1222
Q ss_pred HHHHHHHhcchhh-hhHhhHHHHHHHhccHHHHHHHHHHHHhcCCCcHHHHHHHHHH
Q 012143 389 FETEENELSKMEE-CAGAGESAFLDQASAVNVAKECLLAALKADPKAAHIWANLANA 444 (470)
Q Consensus 389 ~~~~~~~~~~~~~-~~~~~l~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~ 444 (470)
...+...+.+.+. .+++.+|.++...|++++|+.+|+++++++|+. .+...+..+
T Consensus 144 ~~~~~~~~~~~~~~~a~~~~g~~~~~~~~~~~A~~~~~~al~l~P~~-~~~~~l~~i 199 (208)
T 3urz_A 144 ETDYKKLSSPTKMQYARYRDGLSKLFTTRYEKARNSLQKVILRFPST-EAQKTLDKI 199 (208)
T ss_dssp HHHHC---CCCHHHHHHHHHHHHHHHHHTHHHHHHHHHHHTTTSCCH-HHHHHHHHH
T ss_pred HHHHHHHhCCCchhHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCH-HHHHHHHHH
Confidence 2233332222222 245566778888899999999999999999974 344445544
|
| >1b89_A Protein (clathrin heavy chain); triskelion, coated vesicles, endocytosis, SELF- assembly, alpha-alpha superhelix; 2.60A {Bos taurus} SCOP: a.118.1.3 | Back alignment and structure |
|---|
Probab=99.86 E-value=3.7e-21 Score=171.95 Aligned_cols=239 Identities=12% Similarity=0.096 Sum_probs=105.1
Q ss_pred hhhhhhhhhHHHHHHHHHHHHhcCCCCcchhhhcccchhhhhcChhhHHHHHHHHHHhCCCChhHHHHHHHHHHHhCChh
Q 012143 13 KKINKLGKCRSRISSKMDSALEFGVDADGDQSGLGTSSSSREEKVSSLKTGLVHVARKMPKNAHAHFLLGLMYQRLGQPL 92 (470)
Q Consensus 13 ~~~~~~g~~~~a~~~~~~~~l~~~p~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~l~~~~~~~g~~~ 92 (470)
..+.+.|+.++|. +.+++. +++..|..+|.. +...|++++|++.|.++ +++..+..++..+...|+++
T Consensus 11 ~ll~~~~~ld~A~-~fae~~-----~~~~vWs~La~A-~l~~g~~~eAIdsfika-----~D~~~y~~V~~~ae~~g~~E 78 (449)
T 1b89_A 11 VLIEHIGNLDRAY-EFAERC-----NEPAVWSQLAKA-QLQKGMVKEAIDSYIKA-----DDPSSYMEVVQAANTSGNWE 78 (449)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred HHHHHccCHHHHH-HHHHhC-----CChHHHHHHHHH-HHHcCCHHHHHHHHHcC-----CCHHHHHHHHHHHHhCCCHH
Confidence 4466788888888 777776 344699999999 99999999999999763 56779999999999999999
Q ss_pred HHHHHHHHHHHHHhhhhcccchhhhHHHHHHhhhccccccccCCCccccccCcccHHHHHHHHHHhhhcCccchHHHHHH
Q 012143 93 KAVSSYEKAEEILLRCEADIARPELLSLVQIHHAQCLLPESSGDNSLDKELEPEELEEILSKLKESMQSDTRQAVVWNTL 172 (470)
Q Consensus 93 ~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~l 172 (470)
+|+.+++.+.+..+++ .+...++.+ +.+.|++.++.+.++. | +..+|..+
T Consensus 79 eAi~yl~~ark~~~~~-------------~i~~~Li~~-----------Y~Klg~l~e~e~f~~~-----p-n~~a~~~I 128 (449)
T 1b89_A 79 ELVKYLQMARKKARES-------------YVETELIFA-----------LAKTNRLAELEEFING-----P-NNAHIQQV 128 (449)
T ss_dssp ------------------------------------------------------CHHHHTTTTTC-----C---------
T ss_pred HHHHHHHHHHHhCccc-------------hhHHHHHHH-----------HHHhCCHHHHHHHHcC-----C-cHHHHHHH
Confidence 9999999988753221 122233333 3456777888877742 4 34699999
Q ss_pred HHHHHHcCChHHHHHHHHHHhhcCCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCChHHHHHHHHHHHhhhcccc
Q 012143 173 GLILLKSGRLQSSISVLSSLLAVDPNNCDCIGNLGIAYFQSGDMEQSAKCFQDLILKDQNHPAALINYAALLLCKYGSVL 252 (470)
Q Consensus 173 ~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~l~~~~~~~~~~~~ 252 (470)
|..+...|+|++|..+|.++ ..|..+|.++.++|++++|++.++++ +++.+|...+.++.
T Consensus 129 Gd~~~~~g~yeeA~~~Y~~a--------~n~~~LA~~L~~Lg~yq~AVea~~KA-----~~~~~Wk~v~~aCv------- 188 (449)
T 1b89_A 129 GDRCYDEKMYDAAKLLYNNV--------SNFGRLASTLVHLGEYQAAVDGARKA-----NSTRTWKEVCFACV------- 188 (449)
T ss_dssp --------CTTTHHHHHHHT--------TCHHHHHHHHHTTTCHHHHHHHHHHH-----TCHHHHHHHHHHHH-------
T ss_pred HHHHHHcCCHHHHHHHHHHh--------hhHHHHHHHHHHhccHHHHHHHHHHc-----CCchhHHHHHHHHH-------
Confidence 99999999999999999986 57899999999999999999999999 47888888888877
Q ss_pred cccccchhhhhHHHhcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCChhHHHHHHHHHHhcCCCcccHHHHHHH
Q 012143 253 AGAGANTGEGACLDQASAVNVAKECLLAALKADPKAAHIWANLANAYYLTGDHRSSGKCLEKAAKLEPNCMSTRYAVAV 331 (470)
Q Consensus 253 ~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~p~~~~~~~~l~~ 331 (470)
..|+++.|..+... +..+|+ -...+..+|.+.|++++|+.++++++.+++.+...+..++.
T Consensus 189 --------------~~~ef~lA~~~~l~-L~~~ad---~l~~lv~~Yek~G~~eEai~lLe~aL~le~ah~~~ftel~i 249 (449)
T 1b89_A 189 --------------DGKEFRLAQMCGLH-IVVHAD---ELEELINYYQDRGYFEELITMLEAALGLERAHMGMFTELAI 249 (449)
T ss_dssp --------------HTTCHHHHHHTTTT-TTTCHH---HHHHHHHHHHHTTCHHHHHHHHHHHTTSTTCCHHHHHHHHH
T ss_pred --------------HcCcHHHHHHHHHH-HHhCHh---hHHHHHHHHHHCCCHHHHHHHHHHHhCCcHHHHHHHHHHHH
Confidence 69999999887775 335554 45568899999999999999999999999888776666654
|
| >1xi4_A Clathrin heavy chain; alpha-ZIG-ZAG, beta-propeller, endocytosis-exocyto complex; 7.90A {Bos taurus} SCOP: i.23.1.1 PDB: 1xi5_A 3iyv_A | Back alignment and structure |
|---|
Probab=99.86 E-value=8.1e-19 Score=174.57 Aligned_cols=273 Identities=13% Similarity=0.089 Sum_probs=190.9
Q ss_pred CCCcchhhhcccchhhhhcChhhHHHHHHHHHHhCCCChhHHHHHHHHHHHhCChhHHHHHHHHHHHHHhhhhcccchhh
Q 012143 37 VDADGDQSGLGTSSSSREEKVSSLKTGLVHVARKMPKNAHAHFLLGLMYQRLGQPLKAVSSYEKAEEILLRCEADIARPE 116 (470)
Q Consensus 37 p~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~ 116 (470)
.+++..|+.+|.. +...|++++|+..|.++ ++++.+..+|.++.+.|++++|+++|..+.+..+.+...
T Consensus 1102 vn~p~vWsqLAKA-ql~~G~~kEAIdsYiKA-----dD~say~eVa~~~~~lGkyEEAIeyL~mArk~~~e~~Id----- 1170 (1630)
T 1xi4_A 1102 CNEPAVWSQLAKA-QLQKGMVKEAIDSYIKA-----DDPSSYMEVVQAANTSGNWEELVKYLQMARKKARESYVE----- 1170 (1630)
T ss_pred cCCHHHHHHHHHH-HHhCCCHHHHHHHHHhc-----CChHHHHHHHHHHHHcCCHHHHHHHHHHHHhhccccccc-----
Confidence 4678889999999 99999999999999764 788888999999999999999999999888765332110
Q ss_pred hHHHHHHhhhccccccccCCCccccccCcccHHHHHHHHHHhhhcCccchHHHHHHHHHHHHcCChHHHHHHHHHHhhcC
Q 012143 117 LLSLVQIHHAQCLLPESSGDNSLDKELEPEELEEILSKLKESMQSDTRQAVVWNTLGLILLKSGRLQSSISVLSSLLAVD 196 (470)
Q Consensus 117 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~ 196 (470)
..++.+| .+.+++++ ++.|. ..| +...+..+|..+...|+|++|..+|.++
T Consensus 1171 --------t~LafaY-----------AKl~rlee-le~fI----~~~-n~ad~~~iGd~le~eg~YeeA~~~Y~kA---- 1221 (1630)
T 1xi4_A 1171 --------TELIFAL-----------AKTNRLAE-LEEFI----NGP-NNAHIQQVGDRCYDEKMYDAAKLLYNNV---- 1221 (1630)
T ss_pred --------HHHHHHH-----------HhhcCHHH-HHHHH----hCC-CHHHHHHHHHHHHhcCCHHHHHHHHHhh----
Confidence 0122222 23344553 33332 233 3456668999999999999999999985
Q ss_pred CCChHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCChHHHHHHHHHHHhhhcccccccccchhhhhHHHhcCCHHHHHH
Q 012143 197 PNNCDCIGNLGIAYFQSGDMEQSAKCFQDLILKDQNHPAALINYAALLLCKYGSVLAGAGANTGEGACLDQASAVNVAKE 276 (470)
Q Consensus 197 ~~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~ 276 (470)
..|..+|.++.++|++++|++.++++ .++.+|...+.++. ..|++..|..
T Consensus 1222 ----~ny~rLA~tLvkLge~q~AIEaarKA-----~n~~aWkev~~acv---------------------e~~Ef~LA~~ 1271 (1630)
T 1xi4_A 1222 ----SNFGRLASTLVHLGEYQAAVDGARKA-----NSTRTWKEVCFACV---------------------DGKEFRLAQM 1271 (1630)
T ss_pred ----hHHHHHHHHHHHhCCHHHHHHHHHHh-----CCHHHHHHHHHHHh---------------------hhhHHHHHHH
Confidence 47889999999999999999999988 45678888877776 5888999988
Q ss_pred HHHHHHhcCCCCHHHHHHHHHHHHHcCChhHHHHHHHHHHhcCCCcccHHHHHHHHHHHHhhhccCchHHhhhhHHHHHH
Q 012143 277 CLLAALKADPKAAHIWANLANAYYLTGDHRSSGKCLEKAAKLEPNCMSTRYAVAVSRIKDAERSQEPTEQLSWAGNEMAS 356 (470)
Q Consensus 277 ~~~~~~~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~p~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~ 356 (470)
+... +..+ ++.+..++..|...|.+++|+.++++++.++|.+...+..++.....- ..+.+.... +
T Consensus 1272 cgl~-Iiv~---~deLeeli~yYe~~G~feEAI~LlE~aL~LeraH~gmftELaiLyaKy------~peklmEhl----k 1337 (1630)
T 1xi4_A 1272 CGLH-IVVH---ADELEELINYYQDRGYFEELITMLEAALGLERAHMGMFTELAILYSKF------KPQKMREHL----E 1337 (1630)
T ss_pred HHHh-hhcC---HHHHHHHHHHHHHcCCHHHHHHHHHHHhccChhHhHHHHHHHHHHHhC------CHHHHHHHH----H
Confidence 8774 4333 555668899999999999999999999999988776665555432220 011111111 1
Q ss_pred HhhcCCCCCC-----CcHHHHHHHHHHHhccccHHHHHHHHH
Q 012143 357 ILREGDPVQI-----EPPIAWAGFAAVQKTHHEVAAAFETEE 393 (470)
Q Consensus 357 ~~~~~~~~~~-----~~~~~~~~l~~~~~~~~~~~~A~~~~~ 393 (470)
.+.....+++ ..+..|..+..+|.+.|+++.|+...-
T Consensus 1338 ~f~~rini~k~~r~~e~~~lW~elv~LY~~~~e~dnA~~tm~ 1379 (1630)
T 1xi4_A 1338 LFWSRVNIPKVLRAAEQAHLWAELVFLYDKYEEYDNAIITMM 1379 (1630)
T ss_pred HHHHhcccchHhHHHHHHHHHHHHHHHHHhcccHHHHHHHHH
Confidence 1111122222 345567777777777777777764433
|
| >2yhc_A BAMD, UPF0169 lipoprotein YFIO; essential BAM component, membrane protein; 1.80A {Escherichia coli} PDB: 3tgo_A 3q5m_A | Back alignment and structure |
|---|
Probab=99.85 E-value=1.2e-19 Score=153.25 Aligned_cols=206 Identities=13% Similarity=0.087 Sum_probs=157.3
Q ss_pred chHHHHHHHHHHHHcCChHHHHHHHHHHhhcCCCCh---HHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCChH---HHH
Q 012143 165 QAVVWNTLGLILLKSGRLQSSISVLSSLLAVDPNNC---DCIGNLGIAYFQSGDMEQSAKCFQDLILKDQNHPA---ALI 238 (470)
Q Consensus 165 ~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~---~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~---~~~ 238 (470)
.+..++.+|..+...|++++|+..|++++...|.++ .+++.+|.++...|++++|+..|+++++.+|+++. +++
T Consensus 3 ~~~~~~~~a~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~a~~~lg~~~~~~~~~~~A~~~~~~~l~~~P~~~~~~~a~~ 82 (225)
T 2yhc_A 3 PPNEIYATAQQKLQDGNWRQAITQLEALDNRYPFGPYSQQVQLDLIYAYYKNADLPLAQAAIDRFIRLNPTHPNIDYVMY 82 (225)
T ss_dssp CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCTTHHHHHH
T ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHCcCCCcHHHHHH
Confidence 467889999999999999999999999999988874 68999999999999999999999999999999875 677
Q ss_pred HHHHHHHhhhcccccccccchhhhhHHHhcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCChhHHHHHHHHHHhc
Q 012143 239 NYAALLLCKYGSVLAGAGANTGEGACLDQASAVNVAKECLLAALKADPKAAHIWANLANAYYLTGDHRSSGKCLEKAAKL 318 (470)
Q Consensus 239 ~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~ 318 (470)
.+|.++.. .+. .....+..++.++...|++++|+..|+++++.
T Consensus 83 ~~g~~~~~---------------------~~~----------------~~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~ 125 (225)
T 2yhc_A 83 MRGLTNMA---------------------LDD----------------SALQGFFGVDRSDRDPQQARAAFSDFSKLVRG 125 (225)
T ss_dssp HHHHHHHH---------------------HHC------------------------------CCHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHh---------------------hhh----------------hhhhhhhccchhhcCcHHHHHHHHHHHHHHHH
Confidence 77777652 221 12233556677778889999999999999999
Q ss_pred CCCcccHHHHHHHHHHHHhhhccCchHHhhhhHHHHHHHhhcCCCCCCCcHHHHHHHHHHHhccccHHHHHHHHHHHhcc
Q 012143 319 EPNCMSTRYAVAVSRIKDAERSQEPTEQLSWAGNEMASILREGDPVQIEPPIAWAGFAAVQKTHHEVAAAFETEENELSK 398 (470)
Q Consensus 319 ~p~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~ 398 (470)
.|++..+...... ++.+..
T Consensus 126 ~P~~~~a~~a~~~-------------------------------------------l~~~~~------------------ 144 (225)
T 2yhc_A 126 YPNSQYTTDATKR-------------------------------------------LVFLKD------------------ 144 (225)
T ss_dssp CTTCTTHHHHHHH-------------------------------------------HHHHHH------------------
T ss_pred CcCChhHHHHHHH-------------------------------------------HHHHHH------------------
Confidence 9998765432211 111100
Q ss_pred hhhhhHhhHHHHHHHhccHHHHHHHHHHHHhcCCCcH---HHHHHHHHHHHHcCChHHHHHHHHHHHHhhccC
Q 012143 399 MEECAGAGESAFLDQASAVNVAKECLLAALKADPKAA---HIWANLANAYYLTGDHRSSGKCLEKVLMVYCSS 468 (470)
Q Consensus 399 ~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~p~~~---~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~ 468 (470)
......+.+|.++...|++++|+..|+++++..|+++ .+++.+|.++..+|++++|+..++++....|.+
T Consensus 145 ~~~~~~~~~a~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~a~~~l~~~~~~~g~~~~A~~~~~~l~~~~~~~ 217 (225)
T 2yhc_A 145 RLAKYEYSVAEYYTERGAWVAVVNRVEGMLRDYPDTQATRDALPLMENAYRQMQMNAQAEKVAKIIAANSSNT 217 (225)
T ss_dssp HHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHSTTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHCCSCC
T ss_pred HHHHHHHHHHHHHHHcCcHHHHHHHHHHHHHHCcCCCccHHHHHHHHHHHHHcCCcHHHHHHHHHHHhhCCCc
Confidence 0011234567789999999999999999999999985 789999999999999999999999988877654
|
| >4ga2_A E3 SUMO-protein ligase ranbp2; TPR motif, nuclear pore complex component nucleocytoplasmic transport, transport protein; 0.95A {Pan troglodytes} PDB: 4ga0_A 4ga1_A* | Back alignment and structure |
|---|
Probab=99.85 E-value=4e-21 Score=150.68 Aligned_cols=139 Identities=15% Similarity=0.149 Sum_probs=126.7
Q ss_pred HHHHHHHHcCChHHHHHHHHHHhhcCCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCChHHHHHHHHHHHhhhcc
Q 012143 171 TLGLILLKSGRLQSSISVLSSLLAVDPNNCDCIGNLGIAYFQSGDMEQSAKCFQDLILKDQNHPAALINYAALLLCKYGS 250 (470)
Q Consensus 171 ~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~l~~~~~~~~~~ 250 (470)
.||.++...|++++|+..+++++..+|+++..++.+|.+|...|++++|++.|+++++++|+++.++..+|.++.
T Consensus 2 ~LG~~~~~~~~~e~ai~~~~~a~~~~p~~~~~~~~la~~y~~~~~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~----- 76 (150)
T 4ga2_A 2 PLGSMRRSKADVERYIASVQGSTPSPRQKSIKGFYFAKLYYEAKEYDLAKKYICTYINVQERDPKAHRFLGLLYE----- 76 (150)
T ss_dssp -----CCCHHHHHHHHHHHHHHSCSHHHHHTTHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHH-----
T ss_pred HhHHHHHHcChHHHHHHHHHHhcccCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHH-----
Confidence 478889999999999999999999999999999999999999999999999999999999999999999999888
Q ss_pred cccccccchhhhhHHHhcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCChhHHHHH-HHHHHhcCCCcccHHHHH
Q 012143 251 VLAGAGANTGEGACLDQASAVNVAKECLLAALKADPKAAHIWANLANAYYLTGDHRSSGKC-LEKAAKLEPNCMSTRYAV 329 (470)
Q Consensus 251 ~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~la~~~~~~g~~~~A~~~-~~~a~~~~p~~~~~~~~l 329 (470)
..|++++|+.+|+++++++|+++.++..+|.++...|++++|... ++++++++|+++.++...
T Consensus 77 ----------------~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~aa~~~~~~al~l~P~~~~~~~l~ 140 (150)
T 4ga2_A 77 ----------------LEENTDKAVECYRRSVELNPTQKDLVLKIAELLCKNDVTDGRAKYWVERAAKLFPGSPAVYKLK 140 (150)
T ss_dssp ----------------HTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHCSSSSHHHHHHHHHHHHSTTCHHHHHHH
T ss_pred ----------------HcCchHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHHhCcCCHHHHHHH
Confidence 799999999999999999999999999999999999999987765 599999999998876654
Q ss_pred H
Q 012143 330 A 330 (470)
Q Consensus 330 ~ 330 (470)
+
T Consensus 141 ~ 141 (150)
T 4ga2_A 141 E 141 (150)
T ss_dssp H
T ss_pred H
Confidence 4
|
| >3as5_A MAMA; tetratricopeptide repeats (TPR) containing protein, TPR PROT protein-protein interactions, protein binding; 2.00A {Magnetospirillum magnetotacticum} PDB: 3as4_A 3asd_A 3asg_A 3ash_A 3as8_A 3asf_A | Back alignment and structure |
|---|
Probab=99.85 E-value=6.1e-20 Score=150.05 Aligned_cols=162 Identities=17% Similarity=0.228 Sum_probs=154.3
Q ss_pred ccCcccHHHHHHHHHHhhhcCccchHHHHHHHHHHHHcCChHHHHHHHHHHhhcCCCChHHHHHHHHHHHHcCCHHHHHH
Q 012143 142 ELEPEELEEILSKLKESMQSDTRQAVVWNTLGLILLKSGRLQSSISVLSSLLAVDPNNCDCIGNLGIAYFQSGDMEQSAK 221 (470)
Q Consensus 142 ~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~la~~~~~~g~~~~A~~ 221 (470)
+...|++++|+..+++++...|.++.++..+|.++...|++++|+.+++++++..|.++.++..+|.++...|++++|+.
T Consensus 18 ~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~ 97 (186)
T 3as5_A 18 HAKAGRYSQAVMLLEQVYDADAFDVDVALHLGIAYVKTGAVDRGTELLERSLADAPDNVKVATVLGLTYVQVQKYDLAVP 97 (186)
T ss_dssp HHHHTCHHHHHHHHTTTCCTTSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHH
T ss_pred HHHhcCHHHHHHHHHHHHHhCccChHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhcCHHHHHH
Confidence 34667889999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHhhCCCChHHHHHHHHHHHhhhcccccccccchhhhhHHHhcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHH
Q 012143 222 CFQDLILKDQNHPAALINYAALLLCKYGSVLAGAGANTGEGACLDQASAVNVAKECLLAALKADPKAAHIWANLANAYYL 301 (470)
Q Consensus 222 ~~~~~l~~~p~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~la~~~~~ 301 (470)
.+++++...|.++..+..++.++. ..|++++|+.++++++...|+++.++..+|.++..
T Consensus 98 ~~~~~~~~~~~~~~~~~~~a~~~~---------------------~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~ 156 (186)
T 3as5_A 98 LLIKVAEANPINFNVRFRLGVALD---------------------NLGRFDEAIDSFKIALGLRPNEGKVHRAIAFSYEQ 156 (186)
T ss_dssp HHHHHHHHCTTCHHHHHHHHHHHH---------------------HTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHH
T ss_pred HHHHHHhcCcHhHHHHHHHHHHHH---------------------HcCcHHHHHHHHHHHHhcCccchHHHHHHHHHHHH
Confidence 999999999999999988888877 79999999999999999999999999999999999
Q ss_pred cCChhHHHHHHHHHHhcCCCccc
Q 012143 302 TGDHRSSGKCLEKAAKLEPNCMS 324 (470)
Q Consensus 302 ~g~~~~A~~~~~~a~~~~p~~~~ 324 (470)
.|++++|+.++++++...|++..
T Consensus 157 ~~~~~~A~~~~~~~~~~~~~~~~ 179 (186)
T 3as5_A 157 MGRHEEALPHFKKANELDEGASV 179 (186)
T ss_dssp TTCHHHHHHHHHHHHHHHHCCCG
T ss_pred cCCHHHHHHHHHHHHHcCCCchh
Confidence 99999999999999999888654
|
| >2yhc_A BAMD, UPF0169 lipoprotein YFIO; essential BAM component, membrane protein; 1.80A {Escherichia coli} PDB: 3tgo_A 3q5m_A | Back alignment and structure |
|---|
Probab=99.85 E-value=2.1e-19 Score=151.64 Aligned_cols=154 Identities=14% Similarity=0.092 Sum_probs=107.5
Q ss_pred HHHHHHHHHHHHcCChHHHHHHHHHHhhcCCCChH---HHHHHHHHHH------------------HcCCHHHHHHHHHH
Q 012143 167 VVWNTLGLILLKSGRLQSSISVLSSLLAVDPNNCD---CIGNLGIAYF------------------QSGDMEQSAKCFQD 225 (470)
Q Consensus 167 ~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~---~~~~la~~~~------------------~~g~~~~A~~~~~~ 225 (470)
.+++.+|.++...|++++|+..|+++++.+|+++. +++.+|.++. ..|++++|+..|++
T Consensus 42 ~a~~~lg~~~~~~~~~~~A~~~~~~~l~~~P~~~~~~~a~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~ 121 (225)
T 2yhc_A 42 QVQLDLIYAYYKNADLPLAQAAIDRFIRLNPTHPNIDYVMYMRGLTNMALDDSALQGFFGVDRSDRDPQQARAAFSDFSK 121 (225)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCTTHHHHHHHHHHHHHHHHC--------------CCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHHHCcCCCcHHHHHHHHHHHHHhhhhhhhhhhhccchhhcCcHHHHHHHHHHHH
Confidence 34444555555555555555555555555444432 4444444444 47889999999999
Q ss_pred HHhhCCCChHHHHHHHHHHHhhhcccccccccchhhhhHHHhcCCHHHHHHHHHHHHhcCCCCH---HHHHHHHHHHHHc
Q 012143 226 LILKDQNHPAALINYAALLLCKYGSVLAGAGANTGEGACLDQASAVNVAKECLLAALKADPKAA---HIWANLANAYYLT 302 (470)
Q Consensus 226 ~l~~~p~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~p~~~---~~~~~la~~~~~~ 302 (470)
+++..|+++.++..+..+..... ........+|.++...|++++|+..|+++++..|+++ .++..+|.++..+
T Consensus 122 ~l~~~P~~~~a~~a~~~l~~~~~----~~~~~~~~~a~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~a~~~l~~~~~~~ 197 (225)
T 2yhc_A 122 LVRGYPNSQYTTDATKRLVFLKD----RLAKYEYSVAEYYTERGAWVAVVNRVEGMLRDYPDTQATRDALPLMENAYRQM 197 (225)
T ss_dssp HHTTCTTCTTHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHSTTSHHHHHHHHHHHHHHHHT
T ss_pred HHHHCcCChhHHHHHHHHHHHHH----HHHHHHHHHHHHHHHcCcHHHHHHHHHHHHHHCcCCCccHHHHHHHHHHHHHc
Confidence 99999988766543322211100 0011224568888899999999999999999999976 6799999999999
Q ss_pred CChhHHHHHHHHHHhcCCCccc
Q 012143 303 GDHRSSGKCLEKAAKLEPNCMS 324 (470)
Q Consensus 303 g~~~~A~~~~~~a~~~~p~~~~ 324 (470)
|++++|+..++++....|++..
T Consensus 198 g~~~~A~~~~~~l~~~~~~~~~ 219 (225)
T 2yhc_A 198 QMNAQAEKVAKIIAANSSNTLE 219 (225)
T ss_dssp TCHHHHHHHHHHHHHCCSCCCC
T ss_pred CCcHHHHHHHHHHHhhCCCchh
Confidence 9999999999999999988654
|
| >3as5_A MAMA; tetratricopeptide repeats (TPR) containing protein, TPR PROT protein-protein interactions, protein binding; 2.00A {Magnetospirillum magnetotacticum} PDB: 3as4_A 3asd_A 3asg_A 3ash_A 3as8_A 3asf_A | Back alignment and structure |
|---|
Probab=99.84 E-value=2.8e-19 Score=146.04 Aligned_cols=135 Identities=19% Similarity=0.292 Sum_probs=78.1
Q ss_pred hHHHHHHHHHHHHcCChHHHHHHHHHHhhcCCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCChHHHHHHHHHHH
Q 012143 166 AVVWNTLGLILLKSGRLQSSISVLSSLLAVDPNNCDCIGNLGIAYFQSGDMEQSAKCFQDLILKDQNHPAALINYAALLL 245 (470)
Q Consensus 166 ~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~l~~~~~ 245 (470)
...+..+|.++...|++++|+..+++++...|.++.++..+|.++...|++++|+..+++++...|.+..++..++.++.
T Consensus 8 ~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~a~~~~ 87 (186)
T 3as5_A 8 QVYYRDKGISHAKAGRYSQAVMLLEQVYDADAFDVDVALHLGIAYVKTGAVDRGTELLERSLADAPDNVKVATVLGLTYV 87 (186)
T ss_dssp HHHHHHHHHHHHHHTCHHHHHHHHTTTCCTTSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCccChHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHH
Confidence 44555566666666666666666666666666666666666666666666666666666666665555555555554444
Q ss_pred hhhcccccccccchhhhhHHHhcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCChhHHHHHHHHHHhcCCC
Q 012143 246 CKYGSVLAGAGANTGEGACLDQASAVNVAKECLLAALKADPKAAHIWANLANAYYLTGDHRSSGKCLEKAAKLEPN 321 (470)
Q Consensus 246 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~p~ 321 (470)
..|++++|+.++++++...|.++.++..+|.++...|++++|+.++++++...|+
T Consensus 88 ---------------------~~~~~~~A~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~ 142 (186)
T 3as5_A 88 ---------------------QVQKYDLAVPLLIKVAEANPINFNVRFRLGVALDNLGRFDEAIDSFKIALGLRPN 142 (186)
T ss_dssp ---------------------HHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT
T ss_pred ---------------------HhcCHHHHHHHHHHHHhcCcHhHHHHHHHHHHHHHcCcHHHHHHHHHHHHhcCcc
Confidence 4555555555555555555555555555555555555555555555555544444
|
| >3edt_B KLC 2, kinesin light chain 2; superhelical, structural genomics, structural genomics conso SGC, microtubule, motor protein, phosphoprotein; 2.70A {Homo sapiens} PDB: 3ceq_A | Back alignment and structure |
|---|
Probab=99.84 E-value=1.2e-20 Score=165.41 Aligned_cols=237 Identities=14% Similarity=0.128 Sum_probs=175.3
Q ss_pred hhcChhhHHHHHHHHHHh--------CCCChhHHHHHHHHHHHhCChhHHHHHHHHHHHHHhhhhcccchhhhHHHHHHh
Q 012143 53 REEKVSSLKTGLVHVARK--------MPKNAHAHFLLGLMYQRLGQPLKAVSSYEKAEEILLRCEADIARPELLSLVQIH 124 (470)
Q Consensus 53 ~~~~~~~A~~~~~~~l~~--------~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~ 124 (470)
..|++++|+..++++++. +|..+.++..+|.++...|++++|+.+|+++++....... ++......++
T Consensus 13 ~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~----~~~~~~~~~~ 88 (283)
T 3edt_B 13 GLVPRGSAVPLCKQALEDLEKTSGHDHPDVATMLNILALVYRDQNKYKEAAHLLNDALAIREKTLG----KDHPAVAATL 88 (283)
T ss_dssp CCSCSSSHHHHHHHHHHHHHHHHCSSSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTC----TTCHHHHHHH
T ss_pred CCCCHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHcC----CcchHHHHHH
Confidence 345556666666666552 3667889999999999999999999999999987522100 1112234455
Q ss_pred hhccccccccCCCccccccCcccHHHHHHHHHHhhhc--------CccchHHHHHHHHHHHHcCChHHHHHHHHHHhhc-
Q 012143 125 HAQCLLPESSGDNSLDKELEPEELEEILSKLKESMQS--------DTRQAVVWNTLGLILLKSGRLQSSISVLSSLLAV- 195 (470)
Q Consensus 125 ~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~--------~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~- 195 (470)
..+|.++ ...|++++|+..+++++.. +|....++..+|.++...|++++|+.+|+++++.
T Consensus 89 ~~l~~~~-----------~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~ 157 (283)
T 3edt_B 89 NNLAVLY-----------GKRGKYKEAEPLCKRALEIREKVLGKFHPDVAKQLNNLALLCQNQGKAEEVEYYYRRALEIY 157 (283)
T ss_dssp HHHHHHH-----------HTTTCHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHH
T ss_pred HHHHHHH-----------HHhccHHHHHHHHHHHHHHHHHHcCCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHH
Confidence 5566554 5667789999999999987 5778889999999999999999999999999998
Q ss_pred -------CCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHhh---------CCCChHHHHHHHHHHHhhhcccccccccch
Q 012143 196 -------DPNNCDCIGNLGIAYFQSGDMEQSAKCFQDLILK---------DQNHPAALINYAALLLCKYGSVLAGAGANT 259 (470)
Q Consensus 196 -------~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~---------~p~~~~~~~~l~~~~~~~~~~~~~~~~~~~ 259 (470)
.|....++..+|.++...|++++|+..+++++.. .+.....+..++......
T Consensus 158 ~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------------ 225 (283)
T 3edt_B 158 ATRLGPDDPNVAKTKNNLASCYLKQGKYQDAETLYKEILTRAHEKEFGSVNGDNKPIWMHAEEREESK------------ 225 (283)
T ss_dssp HHHSCTTCHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHSSSCCSSCCCHHHHHHHHHHTT------------
T ss_pred HHhcCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCcchhHHHHHHHHHHHHhcC------------
Confidence 6777889999999999999999999999999986 444555566655555421
Q ss_pred hhhhHHHhcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCChhHHHHHHHHHHhcC
Q 012143 260 GEGACLDQASAVNVAKECLLAALKADPKAAHIWANLANAYYLTGDHRSSGKCLEKAAKLE 319 (470)
Q Consensus 260 ~~~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~ 319 (470)
........+..+...+.......|..+.++..+|.++...|++++|+.+|+++++..
T Consensus 226 ---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~ 282 (283)
T 3edt_B 226 ---DKRRDSAPYGEYGSWYKACKVDSPTVNTTLRSLGALYRRQGKLEAAHTLEDCASRNR 282 (283)
T ss_dssp ---CCCCC------------CCCCCCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTC
T ss_pred ---CchhHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhh
Confidence 111133445566666666655667788899999999999999999999999998753
|
| >4gco_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; 1.60A {Caenorhabditis elegans} | Back alignment and structure |
|---|
Probab=99.84 E-value=6.3e-20 Score=138.87 Aligned_cols=122 Identities=16% Similarity=0.138 Sum_probs=107.6
Q ss_pred HhhhcCccchHHHHHHHHHHHHcCChHHHHHHHHHHhhcCCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCChHH
Q 012143 157 ESMQSDTRQAVVWNTLGLILLKSGRLQSSISVLSSLLAVDPNNCDCIGNLGIAYFQSGDMEQSAKCFQDLILKDQNHPAA 236 (470)
Q Consensus 157 ~~~~~~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~ 236 (470)
++..++|+.+..+..+|..++..|+|++|+..|+++++++|.++.++..+|.++..+|++++|+..|+++++++|+++.+
T Consensus 4 r~a~inP~~a~~~~~~G~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~a 83 (126)
T 4gco_A 4 RLAYINPELAQEEKNKGNEYFKKGDYPTAMRHYNEAVKRDPENAILYSNRAACLTKLMEFQRALDDCDTCIRLDSKFIKG 83 (126)
T ss_dssp ---CCCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHH
T ss_pred HHHHHCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHhhHHHhhccHHHHHHHHHHHHHhhhhhhHH
Confidence 34457898899999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHhhhcccccccccchhhhhHHHhcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHH
Q 012143 237 LINYAALLLCKYGSVLAGAGANTGEGACLDQASAVNVAKECLLAALKADPKAAHIWANLANAY 299 (470)
Q Consensus 237 ~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~la~~~ 299 (470)
+..+|.++. ..|++++|+..|+++++++|++..++..++.++
T Consensus 84 ~~~lg~~~~---------------------~~~~~~~A~~~~~~al~l~P~~~~a~~~l~~~l 125 (126)
T 4gco_A 84 YIRKAACLV---------------------AMREWSKAQRAYEDALQVDPSNEEAREGVRNCL 125 (126)
T ss_dssp HHHHHHHHH---------------------HTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHC
T ss_pred HHHHHHHHH---------------------HCCCHHHHHHHHHHHHHHCcCCHHHHHHHHHhc
Confidence 888888887 689999999999999999999999988888763
|
| >3dss_A Geranylgeranyl transferase type-2 subunit alpha; protein prenylation, metal-binding, prenyltransferase, zinc, phosphoprotein; 1.80A {Rattus norvegicus} PDB: 3dst_A* 3dsu_A* 3dsv_A* 3dsw_A* 3dsx_A* 3hxb_A* 3hxc_A* 3hxd_A* 3hxe_A* 3hxf_A* 3pz1_A* 3pz2_A* 3pz3_A* 3c72_A* 4gtv_A* 4gts_A* 4ehm_A* 4gtt_A* | Back alignment and structure |
|---|
Probab=99.83 E-value=3.4e-18 Score=149.10 Aligned_cols=241 Identities=12% Similarity=0.058 Sum_probs=178.7
Q ss_pred HHHHHHHHHHHhcCCCCcchhhhcccchhhhhcC----------hhhHHHHHHHHHHhCCCChhHHHHHHHHHHHhCChh
Q 012143 23 SRISSKMDSALEFGVDADGDQSGLGTSSSSREEK----------VSSLKTGLVHVARKMPKNAHAHFLLGLMYQRLGQPL 92 (470)
Q Consensus 23 ~a~~~~~~~~l~~~p~~~~~~~~~~~~~~~~~~~----------~~~A~~~~~~~l~~~p~~~~~~~~l~~~~~~~g~~~ 92 (470)
+++ ..+..+|..+|++..+|+..+.+ +...+. ++++..++..++..+|++..+|..++.+....|+.
T Consensus 48 eaL-~~t~~~L~~nP~~ytaWn~Rr~i-L~~l~~~~~~~~~~~~l~~EL~~~~~~L~~~PKny~aW~hR~wlL~~l~~~- 124 (331)
T 3dss_A 48 SVL-ELTSQILGANPDFATLWNCRREV-LQHLETEKSPEESAALVKAELGFLESCLRVNPKSYGTWHHRCWLLSRLPEP- 124 (331)
T ss_dssp HHH-HHHHHHHTTCTTCHHHHHHHHHH-HHHHHHHSCHHHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHCSSC-
T ss_pred HHH-HHHHHHHHHCchhHHHHHHHHHH-HHHhcccccchhhhHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHhccCcc-
Confidence 444 66666666666666666666666 544433 45666666666666666666666666666655431
Q ss_pred HHHHHHHHHHHHHhhhhcccchhhhHHHHHHhhhccccccccCCCccccccCcccHHHHHHHHHHhhhcCccchHHHHHH
Q 012143 93 KAVSSYEKAEEILLRCEADIARPELLSLVQIHHAQCLLPESSGDNSLDKELEPEELEEILSKLKESMQSDTRQAVVWNTL 172 (470)
Q Consensus 93 ~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~l 172 (470)
.+++++.++.+++..+|.+..+|...
T Consensus 125 ------------------------------------------------------~~~~EL~~~~k~l~~dprNy~AW~~R 150 (331)
T 3dss_A 125 ------------------------------------------------------NWARELELCARFLEADERNFHCWDYR 150 (331)
T ss_dssp ------------------------------------------------------CHHHHHHHHHHHHHHCTTCHHHHHHH
T ss_pred ------------------------------------------------------cHHHHHHHHHHHHHhCCCCHHHHHHH
Confidence 13566777777777789999999999
Q ss_pred HHHHHHcCC-hHHHHHHHHHHhhcCCCChHHHHHHHHHHHHc--------------CCHHHHHHHHHHHHhhCCCChHHH
Q 012143 173 GLILLKSGR-LQSSISVLSSLLAVDPNNCDCIGNLGIAYFQS--------------GDMEQSAKCFQDLILKDQNHPAAL 237 (470)
Q Consensus 173 ~~~~~~~~~-~~~A~~~~~~a~~~~~~~~~~~~~la~~~~~~--------------g~~~~A~~~~~~~l~~~p~~~~~~ 237 (470)
+.+....|. ++++++++.++++.+|.+..+|..++.++... +.++++++++.+++..+|++..+|
T Consensus 151 ~~vl~~l~~~~~eel~~~~~~I~~~p~N~SAW~~R~~ll~~l~~~~~~~~~~~~~~~~~~eEle~~~~ai~~~P~d~SaW 230 (331)
T 3dss_A 151 RFVAAQAAVAPAEELAFTDSLITRNFSNYSSWHYRSCLLPQLHPQPDSGPQGRLPENVLLKELELVQNAFFTDPNDQSAW 230 (331)
T ss_dssp HHHHHHTTCCHHHHHHHHHHHHHHCSCCHHHHHHHHHHHHHHSCCC------CCCHHHHHHHHHHHHHHHHHSTTCHHHH
T ss_pred HHHHHHhCcCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHhhhccccccccccchHHHHHHHHHHHHHHHhCCCCHHHH
Confidence 999999998 58999999999999999999999999998877 568999999999999999999999
Q ss_pred HHHHHHHHhhhcccccccccchhhhhHHHhcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHH---HcCChhHHHHHHHH
Q 012143 238 INYAALLLCKYGSVLAGAGANTGEGACLDQASAVNVAKECLLAALKADPKAAHIWANLANAYY---LTGDHRSSGKCLEK 314 (470)
Q Consensus 238 ~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~la~~~~---~~g~~~~A~~~~~~ 314 (470)
+.+..++....+. ...+ -...+.++++++.+.++++..|++...+..++.+.. ..|..++...++.+
T Consensus 231 ~Y~r~ll~~~~~~--------~~~~--~~~~~~l~~el~~~~elle~~pd~~w~l~~~~~~~~~~~~~~~~~~~~~~l~~ 300 (331)
T 3dss_A 231 FYHRWLLGAGSGR--------CELS--VEKSTVLQSELESCKELQELEPENKWCLLTIILLMRALDPLLYEKETLQYFST 300 (331)
T ss_dssp HHHHHHHHSSSCG--------GGCC--HHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHCTTTTHHHHHHHHHH
T ss_pred HHHHHHHHhccCc--------cccc--hHHHHHHHHHHHHHHHHHhhCcccchHHHHHHHHHHhhcccccHHHHHHHHHH
Confidence 8776666532110 0000 123456899999999999999999666555554433 25778899999999
Q ss_pred HHhcCCCcccHHHHHH
Q 012143 315 AAKLEPNCMSTRYAVA 330 (470)
Q Consensus 315 a~~~~p~~~~~~~~l~ 330 (470)
.++++|....-+..+.
T Consensus 301 l~~~Dp~r~~~y~d~~ 316 (331)
T 3dss_A 301 LKAVDPMRAAYLDDLR 316 (331)
T ss_dssp HHHHCGGGHHHHHHHH
T ss_pred HHHhCcchhhHHHHHH
Confidence 9999999776655443
|
| >2r5s_A Uncharacterized protein VP0806; APC090868.1, vibrio parahaemolyticus RIMD 22 structural genomics, PSI-2, protein structure initiative; HET: MES; 2.14A {Vibrio parahaemolyticus} | Back alignment and structure |
|---|
Probab=99.82 E-value=2.9e-19 Score=144.53 Aligned_cols=140 Identities=17% Similarity=0.109 Sum_probs=108.4
Q ss_pred CccchHHHHHHHHHHHHcCChHHHHHHHHHHhhcCCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCChHHHHHHH
Q 012143 162 DTRQAVVWNTLGLILLKSGRLQSSISVLSSLLAVDPNNCDCIGNLGIAYFQSGDMEQSAKCFQDLILKDQNHPAALINYA 241 (470)
Q Consensus 162 ~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~l~ 241 (470)
+|...+.++.+|..+...|++++|+..|+++++.+|+++.+++.+|.++...|++++|+..+++++..+| ++.....++
T Consensus 2 ~~~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~P~~~~a~~~la~~~~~~g~~~~A~~~~~~a~~~~p-~~~~~~~~~ 80 (176)
T 2r5s_A 2 NASPDEQLLKQVSELLQQGEHAQALNVIQTLSDELQSRGDVKLAKADCLLETKQFELAQELLATIPLEYQ-DNSYKSLIA 80 (176)
T ss_dssp ----CTTHHHHHHHHHHTTCHHHHHHHHHTSCHHHHTSHHHHHHHHHHHHHTTCHHHHHHHHTTCCGGGC-CHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCcHHHHHHHHHHHHHCCCHHHHHHHHHHhhhccC-ChHHHHHHH
Confidence 3445567788888899999999999999999999999999999999999999999999999999988888 766554444
Q ss_pred HHHHhhhcccccccccchhhhhHHHhcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCChhHHHHHHHHHHhcCCC
Q 012143 242 ALLLCKYGSVLAGAGANTGEGACLDQASAVNVAKECLLAALKADPKAAHIWANLANAYYLTGDHRSSGKCLEKAAKLEPN 321 (470)
Q Consensus 242 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~p~ 321 (470)
.+... ..+...+|+..++++++.+|+++.+++.+|.++...|++++|+..|+++++.+|+
T Consensus 81 ~~~~~--------------------~~~~~~~a~~~~~~al~~~P~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~ 140 (176)
T 2r5s_A 81 KLELH--------------------QQAAESPELKRLEQELAANPDNFELACELAVQYNQVGRDEEALELLWNILKVNLG 140 (176)
T ss_dssp HHHHH--------------------HHHTSCHHHHHHHHHHHHSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCTT
T ss_pred HHHHH--------------------hhcccchHHHHHHHHHHhCCCCHHHHHHHHHHHHHcccHHHHHHHHHHHHHhCcc
Confidence 33221 1222335788888888888888888888888888888888888888888888876
Q ss_pred c
Q 012143 322 C 322 (470)
Q Consensus 322 ~ 322 (470)
.
T Consensus 141 ~ 141 (176)
T 2r5s_A 141 A 141 (176)
T ss_dssp T
T ss_pred c
Confidence 3
|
| >1b89_A Protein (clathrin heavy chain); triskelion, coated vesicles, endocytosis, SELF- assembly, alpha-alpha superhelix; 2.60A {Bos taurus} SCOP: a.118.1.3 | Back alignment and structure |
|---|
Probab=99.82 E-value=1.4e-20 Score=168.18 Aligned_cols=284 Identities=13% Similarity=0.110 Sum_probs=136.4
Q ss_pred hhhhcChhhHHHHHHHHHHhCCCChhHHHHHHHHHHHhCChhHHHHHHHHHHHHHhhhhcccchhhhHHHHHHhhhcccc
Q 012143 51 SSREEKVSSLKTGLVHVARKMPKNAHAHFLLGLMYQRLGQPLKAVSSYEKAEEILLRCEADIARPELLSLVQIHHAQCLL 130 (470)
Q Consensus 51 ~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 130 (470)
....|++++|.+.++++ +++.+|..+|..+...|++++|++.|.++-.. . .+...+..
T Consensus 13 l~~~~~ld~A~~fae~~-----~~~~vWs~La~A~l~~g~~~eAIdsfika~D~----------~-------~y~~V~~~ 70 (449)
T 1b89_A 13 IEHIGNLDRAYEFAERC-----NEPAVWSQLAKAQLQKGMVKEAIDSYIKADDP----------S-------SYMEVVQA 70 (449)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred HHHccCHHHHHHHHHhC-----CChHHHHHHHHHHHHcCCHHHHHHHHHcCCCH----------H-------HHHHHHHH
Confidence 55678899999999987 33569999999999999999999999875211 1 11112221
Q ss_pred ccccCCCccccccCcccHHHHHHHHHHhhhcCccchHHHHHHHHHHHHcCChHHHHHHHHHHhhcCCCChHHHHHHHHHH
Q 012143 131 PESSGDNSLDKELEPEELEEILSKLKESMQSDTRQAVVWNTLGLILLKSGRLQSSISVLSSLLAVDPNNCDCIGNLGIAY 210 (470)
Q Consensus 131 ~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~la~~~ 210 (470)
+...|++++|+.+++.+.+..++ +.+...++.+|.+.|++.++.+.++. |+ ..+|..+|..+
T Consensus 71 -----------ae~~g~~EeAi~yl~~ark~~~~-~~i~~~Li~~Y~Klg~l~e~e~f~~~-----pn-~~a~~~IGd~~ 132 (449)
T 1b89_A 71 -----------ANTSGNWEELVKYLQMARKKARE-SYVETELIFALAKTNRLAELEEFING-----PN-NAHIQQVGDRC 132 (449)
T ss_dssp --------------------------------------------------CHHHHTTTTTC-----C-------------
T ss_pred -----------HHhCCCHHHHHHHHHHHHHhCcc-chhHHHHHHHHHHhCCHHHHHHHHcC-----Cc-HHHHHHHHHHH
Confidence 34568889999999998886444 77888999999999999999887753 43 46999999999
Q ss_pred HHcCCHHHHHHHHHHHHhhCCCChHHHHHHHHHHHhhhcccccccccchhhhhHHHhcCCHHHHHHHHHHHHhcCCCCHH
Q 012143 211 FQSGDMEQSAKCFQDLILKDQNHPAALINYAALLLCKYGSVLAGAGANTGEGACLDQASAVNVAKECLLAALKADPKAAH 290 (470)
Q Consensus 211 ~~~g~~~~A~~~~~~~l~~~p~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~p~~~~ 290 (470)
...|+|++|+.+|.++ ..|..++.++. +.|++++|++.++++ .++.
T Consensus 133 ~~~g~yeeA~~~Y~~a--------~n~~~LA~~L~---------------------~Lg~yq~AVea~~KA-----~~~~ 178 (449)
T 1b89_A 133 YDEKMYDAAKLLYNNV--------SNFGRLASTLV---------------------HLGEYQAAVDGARKA-----NSTR 178 (449)
T ss_dssp ----CTTTHHHHHHHT--------TCHHHHHHHHH---------------------TTTCHHHHHHHHHHH-----TCHH
T ss_pred HHcCCHHHHHHHHHHh--------hhHHHHHHHHH---------------------HhccHHHHHHHHHHc-----CCch
Confidence 9999999999999987 35666776666 899999999999999 4689
Q ss_pred HHHHHHHHHHHcCChhHHHHHHHHHHhcCCCcccHHHHHHHHHHHHhhhccCchHHhhhhHHHHHHHhhcCCCCCCCcHH
Q 012143 291 IWANLANAYYLTGDHRSSGKCLEKAAKLEPNCMSTRYAVAVSRIKDAERSQEPTEQLSWAGNEMASILREGDPVQIEPPI 370 (470)
Q Consensus 291 ~~~~la~~~~~~g~~~~A~~~~~~a~~~~p~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 370 (470)
+|...+.++...|+++.|..+... +...|++
T Consensus 179 ~Wk~v~~aCv~~~ef~lA~~~~l~-L~~~ad~------------------------------------------------ 209 (449)
T 1b89_A 179 TWKEVCFACVDGKEFRLAQMCGLH-IVVHADE------------------------------------------------ 209 (449)
T ss_dssp HHHHHHHHHHHTTCHHHHHHTTTT-TTTCHHH------------------------------------------------
T ss_pred hHHHHHHHHHHcCcHHHHHHHHHH-HHhCHhh------------------------------------------------
Confidence 999999999999999999666554 2234432
Q ss_pred HHHHHHHHHhccccHHHHHHHHHHHhcchh--hhhHhhHHHHHH--HhccHHHHHHHHHHHHhcCC-----CcHHHHHHH
Q 012143 371 AWAGFAAVQKTHHEVAAAFETEENELSKME--ECAGAGESAFLD--QASAVNVAKECLLAALKADP-----KAAHIWANL 441 (470)
Q Consensus 371 ~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~--~~~~~~l~~~~~--~~~~~~~A~~~~~~al~~~p-----~~~~~~~~l 441 (470)
...+...|.+.|.+++|+..++.++...+ ...+..+|.++. +-++..+.++.|...+.+.| +++..|..+
T Consensus 210 -l~~lv~~Yek~G~~eEai~lLe~aL~le~ah~~~ftel~il~~ky~p~k~~ehl~~~~~~ini~k~~~~~~~~~~w~e~ 288 (449)
T 1b89_A 210 -LEELINYYQDRGYFEELITMLEAALGLERAHMGMFTELAILYSKFKPQKMREHLELFWSRVNIPKVLRAAEQAHLWAEL 288 (449)
T ss_dssp -HHHHHHHHHHTTCHHHHHHHHHHHTTSTTCCHHHHHHHHHHHHTTCHHHHHHHHHHHSTTSCHHHHHHHHHTTTCHHHH
T ss_pred -HHHHHHHHHHCCCHHHHHHHHHHHhCCcHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHH
Confidence 22366678888999999999998776443 355677777766 46778888888888888877 778889999
Q ss_pred HHHHHHcCChHHHHHHH
Q 012143 442 ANAYYLTGDHRSSGKCL 458 (470)
Q Consensus 442 a~~~~~~g~~~~A~~~~ 458 (470)
..+|...++++.|+...
T Consensus 289 ~~ly~~~~e~d~A~~tm 305 (449)
T 1b89_A 289 VFLYDKYEEYDNAIITM 305 (449)
T ss_dssp HHHHHHTTCHHHHHHHH
T ss_pred HHHHHhhchHHHHHHHH
Confidence 99999999999888754
|
| >2r5s_A Uncharacterized protein VP0806; APC090868.1, vibrio parahaemolyticus RIMD 22 structural genomics, PSI-2, protein structure initiative; HET: MES; 2.14A {Vibrio parahaemolyticus} | Back alignment and structure |
|---|
Probab=99.81 E-value=4.9e-19 Score=143.21 Aligned_cols=152 Identities=11% Similarity=0.043 Sum_probs=127.8
Q ss_pred CcccHHHHHHHHHHhhhcCccchHHHHHHHHHHHHcCChHHHHHHHHHHhhcCCCChHHHHHHHHHHH-HcCCHHHHHHH
Q 012143 144 EPEELEEILSKLKESMQSDTRQAVVWNTLGLILLKSGRLQSSISVLSSLLAVDPNNCDCIGNLGIAYF-QSGDMEQSAKC 222 (470)
Q Consensus 144 ~~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~la~~~~-~~g~~~~A~~~ 222 (470)
..|++++|+..|++++..+|+++.+++.+|.++...|++++|+..|++++..+| ++..+..++.+.. ..+...+|+..
T Consensus 18 ~~g~~~~A~~~~~~al~~~P~~~~a~~~la~~~~~~g~~~~A~~~~~~a~~~~p-~~~~~~~~~~~~~~~~~~~~~a~~~ 96 (176)
T 2r5s_A 18 QQGEHAQALNVIQTLSDELQSRGDVKLAKADCLLETKQFELAQELLATIPLEYQ-DNSYKSLIAKLELHQQAAESPELKR 96 (176)
T ss_dssp HTTCHHHHHHHHHTSCHHHHTSHHHHHHHHHHHHHTTCHHHHHHHHTTCCGGGC-CHHHHHHHHHHHHHHHHTSCHHHHH
T ss_pred HcCCHHHHHHHHHHHHHHCCCcHHHHHHHHHHHHHCCCHHHHHHHHHHhhhccC-ChHHHHHHHHHHHHhhcccchHHHH
Confidence 445566666677777777888899999999999999999999999999999999 7777666665533 33344568999
Q ss_pred HHHHHhhCCCChHHHHHHHHHHHhhhcccccccccchhhhhHHHhcCCHHHHHHHHHHHHhcCCCC--HHHHHHHHHHHH
Q 012143 223 FQDLILKDQNHPAALINYAALLLCKYGSVLAGAGANTGEGACLDQASAVNVAKECLLAALKADPKA--AHIWANLANAYY 300 (470)
Q Consensus 223 ~~~~l~~~p~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~p~~--~~~~~~la~~~~ 300 (470)
++++++.+|+++.+++.+|.++. ..|++++|+..|+++++.+|+. +.++..+|.++.
T Consensus 97 ~~~al~~~P~~~~~~~~la~~~~---------------------~~g~~~~A~~~~~~~l~~~p~~~~~~a~~~l~~~~~ 155 (176)
T 2r5s_A 97 LEQELAANPDNFELACELAVQYN---------------------QVGRDEEALELLWNILKVNLGAQDGEVKKTFMDILS 155 (176)
T ss_dssp HHHHHHHSTTCHHHHHHHHHHHH---------------------HTTCHHHHHHHHHHHHTTCTTTTTTHHHHHHHHHHH
T ss_pred HHHHHHhCCCCHHHHHHHHHHHH---------------------HcccHHHHHHHHHHHHHhCcccChHHHHHHHHHHHH
Confidence 99999999999999999988887 6999999999999999999875 669999999999
Q ss_pred HcCChhHHHHHHHHHHh
Q 012143 301 LTGDHRSSGKCLEKAAK 317 (470)
Q Consensus 301 ~~g~~~~A~~~~~~a~~ 317 (470)
..|+.++|+..|++++.
T Consensus 156 ~~g~~~~A~~~y~~al~ 172 (176)
T 2r5s_A 156 ALGQGNAIASKYRRQLY 172 (176)
T ss_dssp HHCSSCHHHHHHHHHHH
T ss_pred HhCCCCcHHHHHHHHHH
Confidence 99999999999998874
|
| >3dss_A Geranylgeranyl transferase type-2 subunit alpha; protein prenylation, metal-binding, prenyltransferase, zinc, phosphoprotein; 1.80A {Rattus norvegicus} PDB: 3dst_A* 3dsu_A* 3dsv_A* 3dsw_A* 3dsx_A* 3hxb_A* 3hxc_A* 3hxd_A* 3hxe_A* 3hxf_A* 3pz1_A* 3pz2_A* 3pz3_A* 3c72_A* 4gtv_A* 4gts_A* 4ehm_A* 4gtt_A* | Back alignment and structure |
|---|
Probab=99.81 E-value=2e-17 Score=144.20 Aligned_cols=160 Identities=12% Similarity=0.070 Sum_probs=149.0
Q ss_pred HHHHHHHHHhhhcCccchHHHHHHHHHHHHcCC----------hHHHHHHHHHHhhcCCCChHHHHHHHHHHHHcCC--H
Q 012143 149 EEILSKLKESMQSDTRQAVVWNTLGLILLKSGR----------LQSSISVLSSLLAVDPNNCDCIGNLGIAYFQSGD--M 216 (470)
Q Consensus 149 ~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~~~----------~~~A~~~~~~a~~~~~~~~~~~~~la~~~~~~g~--~ 216 (470)
++|+..+.+++..+|++..+|...+.++...+. +++++.++..++..+|++..+|...+.++...|+ +
T Consensus 47 ~eaL~~t~~~L~~nP~~ytaWn~Rr~iL~~l~~~~~~~~~~~~l~~EL~~~~~~L~~~PKny~aW~hR~wlL~~l~~~~~ 126 (331)
T 3dss_A 47 ESVLELTSQILGANPDFATLWNCRREVLQHLETEKSPEESAALVKAELGFLESCLRVNPKSYGTWHHRCWLLSRLPEPNW 126 (331)
T ss_dssp HHHHHHHHHHHTTCTTCHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHCSSCCH
T ss_pred HHHHHHHHHHHHHCchhHHHHHHHHHHHHHhcccccchhhhHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHhccCcccH
Confidence 689999999999999999999999999988776 6899999999999999999999999999999994 8
Q ss_pred HHHHHHHHHHHhhCCCChHHHHHHHHHHHhhhcccccccccchhhhhHHHhcCC-HHHHHHHHHHHHhcCCCCHHHHHHH
Q 012143 217 EQSAKCFQDLILKDQNHPAALINYAALLLCKYGSVLAGAGANTGEGACLDQASA-VNVAKECLLAALKADPKAAHIWANL 295 (470)
Q Consensus 217 ~~A~~~~~~~l~~~p~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~A~~~~~~~~~~~p~~~~~~~~l 295 (470)
++++.++.++++.+|.+..+|...+.++. ..|. ++++++++.++++.+|.+..+|..+
T Consensus 127 ~~EL~~~~k~l~~dprNy~AW~~R~~vl~---------------------~l~~~~~eel~~~~~~I~~~p~N~SAW~~R 185 (331)
T 3dss_A 127 ARELELCARFLEADERNFHCWDYRRFVAA---------------------QAAVAPAEELAFTDSLITRNFSNYSSWHYR 185 (331)
T ss_dssp HHHHHHHHHHHHHCTTCHHHHHHHHHHHH---------------------HTTCCHHHHHHHHHHHHHHCSCCHHHHHHH
T ss_pred HHHHHHHHHHHHhCCCCHHHHHHHHHHHH---------------------HhCcCHHHHHHHHHHHHHHCCCCHHHHHHH
Confidence 99999999999999999999999998887 5676 6999999999999999999999999
Q ss_pred HHHHHHc--------------CChhHHHHHHHHHHhcCCCcccHHHHH
Q 012143 296 ANAYYLT--------------GDHRSSGKCLEKAAKLEPNCMSTRYAV 329 (470)
Q Consensus 296 a~~~~~~--------------g~~~~A~~~~~~a~~~~p~~~~~~~~l 329 (470)
+.++... +.++++++++.+++..+|++..+|+.+
T Consensus 186 ~~ll~~l~~~~~~~~~~~~~~~~~~eEle~~~~ai~~~P~d~SaW~Y~ 233 (331)
T 3dss_A 186 SCLLPQLHPQPDSGPQGRLPENVLLKELELVQNAFFTDPNDQSAWFYH 233 (331)
T ss_dssp HHHHHHHSCCC------CCCHHHHHHHHHHHHHHHHHSTTCHHHHHHH
T ss_pred HHHHHHhhhccccccccccchHHHHHHHHHHHHHHHhCCCCHHHHHHH
Confidence 9999887 558899999999999999999888643
|
| >2vsy_A XCC0866; transferase, glycosyl transferase, GT-B, OGT, protein O-GLCN; HET: NHE; 2.10A {Xanthomonas campestris PV} PDB: 2jlb_A* 2xgm_A* 2xgo_A* 2xgs_A* 2vsn_A* | Back alignment and structure |
|---|
Probab=99.81 E-value=7.9e-19 Score=169.69 Aligned_cols=165 Identities=16% Similarity=0.124 Sum_probs=140.9
Q ss_pred cccHHHHHHHHHHhhhcCccchHHHHHHHHHHHHcCChHHHHHHHHHHhhcCCCChHHHHHHHHHHHHcCCHHHHHHHHH
Q 012143 145 PEELEEILSKLKESMQSDTRQAVVWNTLGLILLKSGRLQSSISVLSSLLAVDPNNCDCIGNLGIAYFQSGDMEQSAKCFQ 224 (470)
Q Consensus 145 ~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~ 224 (470)
.|++++|+..|+++++.+|+++.++..+|.++...|++++|+..|+++++.+|+++.++..+|.++..+|++++|+..|+
T Consensus 2 ~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~ 81 (568)
T 2vsy_A 2 TADGPRELLQLRAAVRHRPQDFVAWLMLADAELGMGDTTAGEMAVQRGLALHPGHPEAVARLGRVRWTQQRHAEAAVLLQ 81 (568)
T ss_dssp -------------------CCHHHHHHHHHHHHHHTCHHHHHHHHHHHHTTSTTCHHHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred CccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHH
Confidence 36789999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHhhCCCChHHHHHHHHHHHhhhcccccccccchhhhhHHHhcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHc--
Q 012143 225 DLILKDQNHPAALINYAALLLCKYGSVLAGAGANTGEGACLDQASAVNVAKECLLAALKADPKAAHIWANLANAYYLT-- 302 (470)
Q Consensus 225 ~~l~~~p~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~la~~~~~~-- 302 (470)
++++.+|++..++..+|.++. ..|++++|+..|+++++.+|+++.++..+|.++...
T Consensus 82 ~al~~~p~~~~~~~~la~~~~---------------------~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~ 140 (568)
T 2vsy_A 82 QASDAAPEHPGIALWLGHALE---------------------DAGQAEAAAAAYTRAHQLLPEEPYITAQLLNWRRRLCD 140 (568)
T ss_dssp HHHHHCTTCHHHHHHHHHHHH---------------------HTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTC
T ss_pred HHHhcCCCCHHHHHHHHHHHH---------------------HcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhhc
Confidence 999999999999999998887 799999999999999999999999999999999999
Q ss_pred -CChhHHHHHHHHHHhcCCCcccHHHHHH
Q 012143 303 -GDHRSSGKCLEKAAKLEPNCMSTRYAVA 330 (470)
Q Consensus 303 -g~~~~A~~~~~~a~~~~p~~~~~~~~l~ 330 (470)
|++++|...++++++.+|++...+..++
T Consensus 141 ~g~~~~A~~~~~~al~~~p~~~~~~~~l~ 169 (568)
T 2vsy_A 141 WRALDVLSAQVRAAVAQGVGAVEPFAFLS 169 (568)
T ss_dssp CTTHHHHHHHHHHHHHHTCCCSCHHHHTT
T ss_pred cccHHHHHHHHHHHHhcCCcccChHHHhC
Confidence 9999999999999999999888776554
|
| >4gco_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; 1.60A {Caenorhabditis elegans} | Back alignment and structure |
|---|
Probab=99.81 E-value=5.2e-19 Score=133.77 Aligned_cols=120 Identities=18% Similarity=0.241 Sum_probs=111.8
Q ss_pred HHhhcCCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCChHHHHHHHHHHHhhhcccccccccchhhhhHHHhcCC
Q 012143 191 SLLAVDPNNCDCIGNLGIAYFQSGDMEQSAKCFQDLILKDQNHPAALINYAALLLCKYGSVLAGAGANTGEGACLDQASA 270 (470)
Q Consensus 191 ~a~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 270 (470)
++..++|+.+..+..+|..+++.|++++|+..|+++++++|.++.++..+|.++. ..|+
T Consensus 4 r~a~inP~~a~~~~~~G~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~---------------------~~~~ 62 (126)
T 4gco_A 4 RLAYINPELAQEEKNKGNEYFKKGDYPTAMRHYNEAVKRDPENAILYSNRAACLT---------------------KLME 62 (126)
T ss_dssp ---CCCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHH---------------------HTTC
T ss_pred HHHHHCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHhhHHH---------------------hhcc
Confidence 3456899999999999999999999999999999999999999999999998888 7999
Q ss_pred HHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCChhHHHHHHHHHHhcCCCcccHHHHHHH
Q 012143 271 VNVAKECLLAALKADPKAAHIWANLANAYYLTGDHRSSGKCLEKAAKLEPNCMSTRYAVAV 331 (470)
Q Consensus 271 ~~~A~~~~~~~~~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~p~~~~~~~~l~~ 331 (470)
+++|+..|+++++++|+++.+|..+|.++..+|++++|+..|+++++++|++..++..++.
T Consensus 63 ~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~~~~~~A~~~~~~al~l~P~~~~a~~~l~~ 123 (126)
T 4gco_A 63 FQRALDDCDTCIRLDSKFIKGYIRKAACLVAMREWSKAQRAYEDALQVDPSNEEAREGVRN 123 (126)
T ss_dssp HHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCcCCHHHHHHHHH
Confidence 9999999999999999999999999999999999999999999999999999988776653
|
| >2ifu_A Gamma-SNAP; membrane fusion, snare complex disassembly, protein structure initiative, PSI, center for eukaryotic structural genomics, CESG; HET: MSE; 2.60A {Danio rerio} | Back alignment and structure |
|---|
Probab=99.80 E-value=1e-18 Score=154.83 Aligned_cols=159 Identities=11% Similarity=0.108 Sum_probs=122.3
Q ss_pred ccHHHHHHHHHHhhhcCcc------chHHHHHHHHHHHHcCChHHHHHHHHHHhhcCCCC------hHHHHHHHHHHHHc
Q 012143 146 EELEEILSKLKESMQSDTR------QAVVWNTLGLILLKSGRLQSSISVLSSLLAVDPNN------CDCIGNLGIAYFQS 213 (470)
Q Consensus 146 ~~~~~A~~~~~~~~~~~p~------~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~------~~~~~~la~~~~~~ 213 (470)
|++++|+..|.+++...+. ...++..+|.+|..+|++++|+.+|++++++.+.. ..++..+|.+|..
T Consensus 50 g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~Al~l~~~~g~~~~~a~~~~~lg~~~~~- 128 (307)
T 2ifu_A 50 KQLEQAKDAYLQEAEAHANNRSLFHAAKAFEQAGMMLKDLQRMPEAVQYIEKASVMYVENGTPDTAAMALDRAGKLMEP- 128 (307)
T ss_dssp TCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCGGGGHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHTT-
T ss_pred CCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHc-
Confidence 3444444444444443321 24577889999999999999999999999874322 4578899999998
Q ss_pred CCHHHHHHHHHHHHhhCCCC------hHHHHHHHHHHHhhhcccccccccchhhhhHHHhcCCHHHHHHHHHHHHhcCCC
Q 012143 214 GDMEQSAKCFQDLILKDQNH------PAALINYAALLLCKYGSVLAGAGANTGEGACLDQASAVNVAKECLLAALKADPK 287 (470)
Q Consensus 214 g~~~~A~~~~~~~l~~~p~~------~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~p~ 287 (470)
|++++|+.+|++++.+.|.. ..++..+ |.++...|++++|+.+|++++.+.|+
T Consensus 129 g~~~~A~~~~~~Al~~~~~~~~~~~~~~~~~~l---------------------g~~~~~~g~~~~A~~~~~~al~~~~~ 187 (307)
T 2ifu_A 129 LDLSKAVHLYQQAAAVFENEERLRQAAELIGKA---------------------SRLLVRQQKFDEAAASLQKEKSMYKE 187 (307)
T ss_dssp TCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHH---------------------HHHHHHTTCHHHHHHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHHHHhCCChhHHHHHHHHH---------------------HHHHHHcCCHHHHHHHHHHHHHHHHH
Confidence 99999999999999887654 2333444 44555899999999999999998665
Q ss_pred C------HHHHHHHHHHHHHcCChhHHHHHHHHHHhcCCCcccHHH
Q 012143 288 A------AHIWANLANAYYLTGDHRSSGKCLEKAAKLEPNCMSTRY 327 (470)
Q Consensus 288 ~------~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~p~~~~~~~ 327 (470)
+ ...+..+|.++..+|++++|+.+|++++ .+|.......
T Consensus 188 ~~~~~~~~~~~~~~g~~~~~~g~~~~A~~~~~~al-~~p~~~~~~e 232 (307)
T 2ifu_A 188 MENYPTCYKKCIAQVLVQLHRADYVAAQKCVRESY-SIPGFSGSED 232 (307)
T ss_dssp TTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHT-TSTTSTTSHH
T ss_pred cCChhHHHHHHHHHHHHHHHcCCHHHHHHHHHHHh-CCCCCCCCHH
Confidence 3 3478889999999999999999999999 9998765543
|
| >3qou_A Protein YBBN; thioredoxin-like fold, tetratricopeptide repeat, lysine dimethylation, protein binding; HET: MLY; 1.80A {Escherichia coli} PDB: 3qdn_A* | Back alignment and structure |
|---|
Probab=99.80 E-value=4.1e-18 Score=149.16 Aligned_cols=171 Identities=13% Similarity=0.084 Sum_probs=147.2
Q ss_pred HhCCCChhHHHHHHHHHHHhCChhHHHHHHHHHHHHHhhhhcccchhhhHHHHHHhhhccccccccCCCccccccCcccH
Q 012143 69 RKMPKNAHAHFLLGLMYQRLGQPLKAVSSYEKAEEILLRCEADIARPELLSLVQIHHAQCLLPESSGDNSLDKELEPEEL 148 (470)
Q Consensus 69 ~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 148 (470)
..-|.+...++.+|..+...|++++|+..|++++..
T Consensus 111 ~~lp~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~-------------------------------------------- 146 (287)
T 3qou_A 111 XVLPREEELXAQQAMQLMQESNYTDALPLLXDAWQL-------------------------------------------- 146 (287)
T ss_dssp HHSCCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--------------------------------------------
T ss_pred HHcCCchhhHHHHHHHHHhCCCHHHHHHHHHHHHHh--------------------------------------------
Confidence 335888888888888888888888888877777765
Q ss_pred HHHHHHHHHhhhcCccchHHHHHHHHHHHHcCChHHHHHHHHHHhhcCCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHh
Q 012143 149 EEILSKLKESMQSDTRQAVVWNTLGLILLKSGRLQSSISVLSSLLAVDPNNCDCIGNLGIAYFQSGDMEQSAKCFQDLIL 228 (470)
Q Consensus 149 ~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~ 228 (470)
+|+++.+++.+|.++...|++++|+..+++++..+|+........+..+...++.++|+..+++++.
T Consensus 147 -------------~P~~~~a~~~la~~~~~~g~~~~A~~~l~~~~~~~p~~~~~~~~~~~~l~~~~~~~~a~~~l~~al~ 213 (287)
T 3qou_A 147 -------------SNQNGEIGLLLAETLIALNRSEDAEAVLXTIPLQDQDTRYQGLVAQIELLXQAADTPEIQQLQQQVA 213 (287)
T ss_dssp -------------TTSCHHHHHHHHHHHHHTTCHHHHHHHHTTSCGGGCSHHHHHHHHHHHHHHHHTSCHHHHHHHHHHH
T ss_pred -------------CCcchhHHHHHHHHHHHCCCHHHHHHHHHhCchhhcchHHHHHHHHHHHHhhcccCccHHHHHHHHh
Confidence 6777888999999999999999999999999999997777777777778888888899999999999
Q ss_pred hCCCChHHHHHHHHHHHhhhcccccccccchhhhhHHHhcCCHHHHHHHHHHHHhcCCCC--HHHHHHHHHHHHHcCChh
Q 012143 229 KDQNHPAALINYAALLLCKYGSVLAGAGANTGEGACLDQASAVNVAKECLLAALKADPKA--AHIWANLANAYYLTGDHR 306 (470)
Q Consensus 229 ~~p~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~p~~--~~~~~~la~~~~~~g~~~ 306 (470)
.+|+++.+++.+|.++. ..|++++|+..|.++++.+|++ ..++..++.++...|+.+
T Consensus 214 ~~P~~~~~~~~la~~l~---------------------~~g~~~~A~~~l~~~l~~~p~~~~~~a~~~l~~~~~~~g~~~ 272 (287)
T 3qou_A 214 ENPEDAALATQLALQLH---------------------QVGRNEEALELLFGHLRXDLTAADGQTRXTFQEILAALGTGD 272 (287)
T ss_dssp HCTTCHHHHHHHHHHHH---------------------HTTCHHHHHHHHHHHHHHCTTGGGGHHHHHHHHHHHHHCTTC
T ss_pred cCCccHHHHHHHHHHHH---------------------HcccHHHHHHHHHHHHhcccccccchHHHHHHHHHHHcCCCC
Confidence 99999999999888887 6899999999999999999987 889999999999999999
Q ss_pred HHHHHHHHHHh
Q 012143 307 SSGKCLEKAAK 317 (470)
Q Consensus 307 ~A~~~~~~a~~ 317 (470)
+|...|++++.
T Consensus 273 ~a~~~~r~al~ 283 (287)
T 3qou_A 273 ALASXYRRQLY 283 (287)
T ss_dssp HHHHHHHHHHH
T ss_pred cHHHHHHHHHH
Confidence 99999988875
|
| >3gyz_A Chaperone protein IPGC; asymmetric homodimer, tetratricopeptide repeat, TPR, chapero virulence; 2.15A {Shigella flexneri} PDB: 3gz1_A 3gz2_A 3ks2_A | Back alignment and structure |
|---|
Probab=99.80 E-value=1.4e-19 Score=140.78 Aligned_cols=115 Identities=13% Similarity=0.143 Sum_probs=76.6
Q ss_pred HHHHHHhhcCCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCChHHHHHHHHHHHhhhcccccccccchhhhhHHH
Q 012143 187 SVLSSLLAVDPNNCDCIGNLGIAYFQSGDMEQSAKCFQDLILKDQNHPAALINYAALLLCKYGSVLAGAGANTGEGACLD 266 (470)
Q Consensus 187 ~~~~~a~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~ 266 (470)
..+++++.++|+++.+++.+|.++...|++++|+..|++++.++|+++.+|..+|.++.
T Consensus 23 ~~l~~al~l~p~~~~~~~~lg~~~~~~g~~~eA~~~~~~al~~~P~~~~~~~~lg~~~~--------------------- 81 (151)
T 3gyz_A 23 ATLKDINAIPDDMMDDIYSYAYDFYNKGRIEEAEVFFRFLCIYDFYNVDYIMGLAAIYQ--------------------- 81 (151)
T ss_dssp CCTGGGCCSCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHH---------------------
T ss_pred CCHHHHhCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHH---------------------
Confidence 34555566666666666666666666666666666666666666666666666666665
Q ss_pred hcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCChhHHHHHHHHHHhcCCCc
Q 012143 267 QASAVNVAKECLLAALKADPKAAHIWANLANAYYLTGDHRSSGKCLEKAAKLEPNC 322 (470)
Q Consensus 267 ~~~~~~~A~~~~~~~~~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~p~~ 322 (470)
..|++++|+.+|+++++++|+++.+|+++|.++..+|++++|+.+|++++++.|+.
T Consensus 82 ~~g~~~~Ai~~~~~al~l~P~~~~~~~~lg~~~~~lg~~~eA~~~~~~al~l~~~~ 137 (151)
T 3gyz_A 82 IKEQFQQAADLYAVAFALGKNDYTPVFHTGQCQLRLKAPLKAKECFELVIQHSNDE 137 (151)
T ss_dssp HTTCHHHHHHHHHHHHHHSSSCCHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCCH
T ss_pred HHccHHHHHHHHHHHHhhCCCCcHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCH
Confidence 46666666666666666666666666666666666666666666666666666664
|
| >3gyz_A Chaperone protein IPGC; asymmetric homodimer, tetratricopeptide repeat, TPR, chapero virulence; 2.15A {Shigella flexneri} PDB: 3gz1_A 3gz2_A 3ks2_A | Back alignment and structure |
|---|
Probab=99.80 E-value=5.2e-19 Score=137.53 Aligned_cols=121 Identities=17% Similarity=0.127 Sum_probs=113.7
Q ss_pred HHHHHHHHHHhhhcCccchHHHHHHHHHHHHcCChHHHHHHHHHHhhcCCCChHHHHHHHHHHHHcCCHHHHHHHHHHHH
Q 012143 148 LEEILSKLKESMQSDTRQAVVWNTLGLILLKSGRLQSSISVLSSLLAVDPNNCDCIGNLGIAYFQSGDMEQSAKCFQDLI 227 (470)
Q Consensus 148 ~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~l 227 (470)
+-.+-..+++++..+|+++.+++.+|.++...|++++|+..|++++.++|+++.+|..+|.++..+|++++|+..|++++
T Consensus 18 ~~~~~~~l~~al~l~p~~~~~~~~lg~~~~~~g~~~eA~~~~~~al~~~P~~~~~~~~lg~~~~~~g~~~~Ai~~~~~al 97 (151)
T 3gyz_A 18 AINSGATLKDINAIPDDMMDDIYSYAYDFYNKGRIEEAEVFFRFLCIYDFYNVDYIMGLAAIYQIKEQFQQAADLYAVAF 97 (151)
T ss_dssp HHHTSCCTGGGCCSCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHCCCCHHHHhCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHccHHHHHHHHHHHH
Confidence 34444567788999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hhCCCChHHHHHHHHHHHhhhcccccccccchhhhhHHHhcCCHHHHHHHHHHHHhcCCCCH
Q 012143 228 LKDQNHPAALINYAALLLCKYGSVLAGAGANTGEGACLDQASAVNVAKECLLAALKADPKAA 289 (470)
Q Consensus 228 ~~~p~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~p~~~ 289 (470)
.++|+++.+++.+|.++. ..|++++|+.+|++++++.|+.+
T Consensus 98 ~l~P~~~~~~~~lg~~~~---------------------~lg~~~eA~~~~~~al~l~~~~~ 138 (151)
T 3gyz_A 98 ALGKNDYTPVFHTGQCQL---------------------RLKAPLKAKECFELVIQHSNDEK 138 (151)
T ss_dssp HHSSSCCHHHHHHHHHHH---------------------HTTCHHHHHHHHHHHHHHCCCHH
T ss_pred hhCCCCcHHHHHHHHHHH---------------------HcCCHHHHHHHHHHHHHhCCCHH
Confidence 999999999999999888 79999999999999999999854
|
| >4e6h_A MRNA 3'-END-processing protein RNA14; HAT domain, heat repeat, CLP1, PCF11, structural protein; 2.30A {Kluyveromyces lactis} PDB: 4e85_A 4eba_A | Back alignment and structure |
|---|
Probab=99.80 E-value=1.3e-16 Score=153.83 Aligned_cols=399 Identities=10% Similarity=-0.017 Sum_probs=256.2
Q ss_pred HHHHHHHHHHHHhcCCCCcchhhhcccchhhhhcChhhHHHHHHHHHHhCCCChhHHHHHHHHHHHhCC---hhHHHHHH
Q 012143 22 RSRISSKMDSALEFGVDADGDQSGLGTSSSSREEKVSSLKTGLVHVARKMPKNAHAHFLLGLMYQRLGQ---PLKAVSSY 98 (470)
Q Consensus 22 ~~a~~~~~~~~l~~~p~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~l~~~~~~~g~---~~~A~~~~ 98 (470)
.+.+ ..++..|..+|.+...|..+... ....+.+..+...|++++...|.....|...+......|+ ++.+...|
T Consensus 49 ~d~i-~~lE~~l~~np~d~~~W~~yi~~-~~~~~~~~~aR~vyEraL~~fP~~~~lW~~Yi~~E~~~~~~~~~~~v~~lf 126 (679)
T 4e6h_A 49 SDVI-GKLNDMIEEQPTDIFLYVKLLKH-HVSLKQWKQVYETFDKLHDRFPLMANIWCMRLSLEFDKMEELDAAVIEPVL 126 (679)
T ss_dssp SCHH-HHHHHHHHHCTTCHHHHHHHHHH-HHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHTC--CCCHHHHHHHH
T ss_pred HHHH-HHHHHHHHHCcCCHHHHHHHHHH-HHhcCcHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHhhCCcchHHHHHHHH
Confidence 3445 78999999999999999999998 8888999999999999999999999999999999999999 99999999
Q ss_pred HHHHHHHhhhhcccchhhhHHHHHHhhhccccccccCCCccccccC--cccHHHHHHHHHHhhh---c-CccchHHHHHH
Q 012143 99 EKAEEILLRCEADIARPELLSLVQIHHAQCLLPESSGDNSLDKELE--PEELEEILSKLKESMQ---S-DTRQAVVWNTL 172 (470)
Q Consensus 99 ~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~A~~~~~~~~~---~-~p~~~~~~~~l 172 (470)
++++...|.+. ..+.+ ...+......+.. .. .+..+.....|++++. . +|....+|...
T Consensus 127 eRal~~~~~~~----sv~LW------~~Yl~f~~~~~~~-----~~~~~~~r~~vr~~FErAl~~vG~~d~~s~~iW~~Y 191 (679)
T 4e6h_A 127 ARCLSKELGNN----DLSLW------LSYITYVRKKNDI-----ITGGEEARNIVIQAFQVVVDKCAIFEPKSIQFWNEY 191 (679)
T ss_dssp HHHTCSSSCCC----CHHHH------HHHHHHHHHHSCS-----TTTHHHHHHHHHHHHHHHHHHTTTTCSSCHHHHHHH
T ss_pred HHHHHhcCCCC----CHHHH------HHHHHHHHHhccc-----ccccchhHHHHHHHHHHHHHHhCcccccchHHHHHH
Confidence 99998763111 01111 1000000000000 00 0111233345555443 2 34444444444
Q ss_pred HHHHH---------HcCChHHHHHHHHHHhhcCCCCh-------------------------------------------
Q 012143 173 GLILL---------KSGRLQSSISVLSSLLAVDPNNC------------------------------------------- 200 (470)
Q Consensus 173 ~~~~~---------~~~~~~~A~~~~~~a~~~~~~~~------------------------------------------- 200 (470)
..... .+++.+.+..+|++++.+.....
T Consensus 192 i~f~~~~~~~~~~eeq~~~~~~R~iy~raL~iP~~~~~~~w~~Y~~fe~~~~~~~a~~~~~e~~~~y~~Ar~~~~e~~~~ 271 (679)
T 4e6h_A 192 LHFLEHWKPVNKFEEQQRVQYIRKLYKTLLCQPMDCLESMWQRYTQWEQDVNQLTARRHIGELSAQYMNARSLYQDWLNI 271 (679)
T ss_dssp HHHHHTCCCCSHHHHHHHHHHHHHHHHHHTTSCCSSHHHHHHHHHHHHHHHCTTTHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHhccccCcHHHHhHHHHHHHHHHHHHhCccHHHHHHHHHHHHHHHhcCcchHHHHHHHhhHHHHHHHHHHHHHHHH
Confidence 33322 12334455555555554311111
Q ss_pred -------------------------------HHHHHHHHHHHHcC-------CHHHHHHHHHHHHhhCCCChHHHHHHHH
Q 012143 201 -------------------------------DCIGNLGIAYFQSG-------DMEQSAKCFQDLILKDQNHPAALINYAA 242 (470)
Q Consensus 201 -------------------------------~~~~~la~~~~~~g-------~~~~A~~~~~~~l~~~p~~~~~~~~l~~ 242 (470)
..|......-...+ ..+.....|++++...|.++..|...+.
T Consensus 272 ~~~l~r~~p~~~~~~~~~~~p~~~~~~~~ql~lW~~yi~fEk~~~~~l~~~~~~~Rv~~~Ye~aL~~~p~~~~lW~~ya~ 351 (679)
T 4e6h_A 272 TKGLKRNLPITLNQATESNLPKPNEYDVQQLLIWLEWIRWESDNKLELSDDLHKARMTYVYMQAAQHVCFAPEIWFNMAN 351 (679)
T ss_dssp TTTCCCCCCSSSTTCCTTTSCCTTCCCHHHHHHHHHHHHHHHTCTTCCCHHHHHHHHHHHHHHHHHHTTTCHHHHHHHHH
T ss_pred HHhHhhccccccccchhccCCCCchhHHHHHHHHHHHHHHHHhCCccccchhhHHHHHHHHHHHHHHcCCCHHHHHHHHH
Confidence 11111111111111 0122345566666666666666666665
Q ss_pred HHHhhhcccccccccchhhhhHHHhcCCHHHHH-HHHHHHHhcCCCCHHHHHHHHHHHHHcCChhHHHHHHHHHHhcC--
Q 012143 243 LLLCKYGSVLAGAGANTGEGACLDQASAVNVAK-ECLLAALKADPKAAHIWANLANAYYLTGDHRSSGKCLEKAAKLE-- 319 (470)
Q Consensus 243 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~-~~~~~~~~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~-- 319 (470)
.+. ..|+.++|. .+|++++...|.+...|...+......|++++|...|++++...
T Consensus 352 ~~~---------------------~~~~~~~a~r~il~rAi~~~P~s~~Lwl~~a~~ee~~~~~e~aR~iyek~l~~l~~ 410 (679)
T 4e6h_A 352 YQG---------------------EKNTDSTVITKYLKLGQQCIPNSAVLAFSLSEQYELNTKIPEIETTILSCIDRIHL 410 (679)
T ss_dssp HHH---------------------HHSCCTTHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHH
T ss_pred HHH---------------------hcCcHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHH
Confidence 554 678888997 99999999999999999999999999999999999999998752
Q ss_pred ---------CCc-----------ccHHHHHHHHHHHHhhhccCchHHhhhhHHHHHHHhhcCCCCCCCcHHHHHHHHHHH
Q 012143 320 ---------PNC-----------MSTRYAVAVSRIKDAERSQEPTEQLSWAGNEMASILREGDPVQIEPPIAWAGFAAVQ 379 (470)
Q Consensus 320 ---------p~~-----------~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~ 379 (470)
|.+ ...|...+ .+.. ...........+....... ++....+|...+.+.
T Consensus 411 ~~~~~~~~~p~~~~~~~~~~~~~~~vWi~y~--~~er---R~~~l~~AR~vf~~A~~~~------~~~~~~lyi~~A~lE 479 (679)
T 4e6h_A 411 DLAALMEDDPTNESAINQLKSKLTYVYCVYM--NTMK---RIQGLAASRKIFGKCRRLK------KLVTPDIYLENAYIE 479 (679)
T ss_dssp HHHHHHHHSTTCHHHHHHHHHHHHHHHHHHH--HHHH---HHHCHHHHHHHHHHHHHTG------GGSCTHHHHHHHHHH
T ss_pred HhhhhhhccCcchhhhhhhccchHHHHHHHH--HHHH---HcCCHHHHHHHHHHHHHhc------CCCChHHHHHHHHHH
Confidence 321 11222221 1111 1111111222222221110 112346777777777
Q ss_pred hccc-cHHHHHHHHHHHhc--chhhhhHhhHHHHHHHhccHHHHHHHHHHHHhcCC---CcHHHHHHHHHHHHHcCChHH
Q 012143 380 KTHH-EVAAAFETEENELS--KMEECAGAGESAFLDQASAVNVAKECLLAALKADP---KAAHIWANLANAYYLTGDHRS 453 (470)
Q Consensus 380 ~~~~-~~~~A~~~~~~~~~--~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~p---~~~~~~~~la~~~~~~g~~~~ 453 (470)
...+ +++.|...|...+. +.....|...+......|+.+.|..+|++++...| ....+|......-...|+.+.
T Consensus 480 ~~~~~d~e~Ar~ife~~Lk~~p~~~~~w~~y~~fe~~~~~~~~AR~lferal~~~~~~~~~~~lw~~~~~fE~~~G~~~~ 559 (679)
T 4e6h_A 480 YHISKDTKTACKVLELGLKYFATDGEYINKYLDFLIYVNEESQVKSLFESSIDKISDSHLLKMIFQKVIFFESKVGSLNS 559 (679)
T ss_dssp HTTTSCCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHTTTSSSTTHHHHHHHHHHHHHHHTCCSHH
T ss_pred HHhCCCHHHHHHHHHHHHHHCCCchHHHHHHHHHHHhCCCHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHcCCHHH
Confidence 6665 48999999999877 44445666777778888999999999999999888 356788888888899999999
Q ss_pred HHHHHHHHHHhhccCC
Q 012143 454 SGKCLEKVLMVYCSSN 469 (470)
Q Consensus 454 A~~~~~~al~~~~~~~ 469 (470)
+.+.++++.+.+|+++
T Consensus 560 ~~~v~~R~~~~~P~~~ 575 (679)
T 4e6h_A 560 VRTLEKRFFEKFPEVN 575 (679)
T ss_dssp HHHHHHHHHHHSTTCC
T ss_pred HHHHHHHHHHhCCCCc
Confidence 9999999999998753
|
| >2ifu_A Gamma-SNAP; membrane fusion, snare complex disassembly, protein structure initiative, PSI, center for eukaryotic structural genomics, CESG; HET: MSE; 2.60A {Danio rerio} | Back alignment and structure |
|---|
Probab=99.79 E-value=5.6e-18 Score=150.09 Aligned_cols=175 Identities=11% Similarity=0.073 Sum_probs=136.3
Q ss_pred HhCChhHHHHHHHHHHHHHhhhhcccchhhhHHHHHHhhhccccccccCCCccccccCcccHHHHHHHHHHhhhcCccch
Q 012143 87 RLGQPLKAVSSYEKAEEILLRCEADIARPELLSLVQIHHAQCLLPESSGDNSLDKELEPEELEEILSKLKESMQSDTRQA 166 (470)
Q Consensus 87 ~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~p~~~ 166 (470)
..|++++|.++++++.+..+.. . +...+++++|+..|.++
T Consensus 3 ~~~~~~eA~~~~~~a~k~~~~~---------------------~-----------~~~~~~~~~A~~~~~~a-------- 42 (307)
T 2ifu_A 3 AAQKISEAHEHIAKAEKYLKTS---------------------F-----------MKWKPDYDSAASEYAKA-------- 42 (307)
T ss_dssp CHHHHHHHHHHHHHHHHHHCCC---------------------S-----------SSCSCCHHHHHHHHHHH--------
T ss_pred ccchHHHHHHHHHHHHHHcccc---------------------c-----------cCCCCCHHHHHHHHHHH--------
Confidence 4578889999999998764310 0 01146789999988876
Q ss_pred HHHHHHHHHHHHcCChHHHHHHHHHHhhcCCCC------hHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCChHHHHHH
Q 012143 167 VVWNTLGLILLKSGRLQSSISVLSSLLAVDPNN------CDCIGNLGIAYFQSGDMEQSAKCFQDLILKDQNHPAALINY 240 (470)
Q Consensus 167 ~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~------~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~l 240 (470)
|.+|...|++++|+.+|.+++++.+.. ..++..+|.+|..+|++++|+.+|++++.+.+..... ...
T Consensus 43 ------~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~Al~l~~~~g~~-~~~ 115 (307)
T 2ifu_A 43 ------AVAFKNAKQLEQAKDAYLQEAEAHANNRSLFHAAKAFEQAGMMLKDLQRMPEAVQYIEKASVMYVENGTP-DTA 115 (307)
T ss_dssp ------HHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCGGGGHHHHHHHHHHHHTTTCH-HHH
T ss_pred ------HHHHHHcCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHcCCH-HHH
Confidence 678899999999999999999986532 4588999999999999999999999999885432111 011
Q ss_pred HHHHHhhhcccccccccchhhhhHHHhcCCHHHHHHHHHHHHhcCCCC------HHHHHHHHHHHHHcCChhHHHHHHHH
Q 012143 241 AALLLCKYGSVLAGAGANTGEGACLDQASAVNVAKECLLAALKADPKA------AHIWANLANAYYLTGDHRSSGKCLEK 314 (470)
Q Consensus 241 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~p~~------~~~~~~la~~~~~~g~~~~A~~~~~~ 314 (470)
+.++ ..+|.++.. |++++|+.+|++++.+.|.. ..++.++|.++..+|++++|+.+|++
T Consensus 116 a~~~--------------~~lg~~~~~-g~~~~A~~~~~~Al~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~ 180 (307)
T 2ifu_A 116 AMAL--------------DRAGKLMEP-LDLSKAVHLYQQAAAVFENEERLRQAAELIGKASRLLVRQQKFDEAAASLQK 180 (307)
T ss_dssp HHHH--------------HHHHHHHTT-TCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred HHHH--------------HHHHHHHHc-CCHHHHHHHHHHHHHHHHhCCChhHHHHHHHHHHHHHHHcCCHHHHHHHHHH
Confidence 1121 124555657 99999999999999987653 57899999999999999999999999
Q ss_pred HHhcCCCcc
Q 012143 315 AAKLEPNCM 323 (470)
Q Consensus 315 a~~~~p~~~ 323 (470)
++.+.|.+.
T Consensus 181 al~~~~~~~ 189 (307)
T 2ifu_A 181 EKSMYKEME 189 (307)
T ss_dssp HHHHHHHTT
T ss_pred HHHHHHHcC
Confidence 999877643
|
| >3q7a_A Farnesyltransferase alpha subunit; protein prenyltransferase, transferase-transferase inhibitor; HET: SUC 3FX FPP 778; 2.00A {Cryptococcus neoformans} PDB: 3q73_A* 3q78_A* 3q79_A* 3q75_A* 3q7f_A* 3sfx_A* 3sfy_A* | Back alignment and structure |
|---|
Probab=99.79 E-value=2e-17 Score=144.70 Aligned_cols=162 Identities=11% Similarity=0.058 Sum_probs=150.8
Q ss_pred HHHHHHHHHHhhhcCccchHHHHHHHHHHHHcC-ChHHHHHHHHHHhhcCCCChHHHHHHHHHHHHc-C-CHHHHHHHHH
Q 012143 148 LEEILSKLKESMQSDTRQAVVWNTLGLILLKSG-RLQSSISVLSSLLAVDPNNCDCIGNLGIAYFQS-G-DMEQSAKCFQ 224 (470)
Q Consensus 148 ~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~~-~~~~A~~~~~~a~~~~~~~~~~~~~la~~~~~~-g-~~~~A~~~~~ 224 (470)
.++|+..+.+++..+|++..+|..++.++...| .+++++..+.+++..+|++..+|...+.++... + +++++++.+.
T Consensus 70 se~AL~lt~~~L~~nP~~ytaWn~R~~iL~~l~~~l~eEL~~~~~~L~~nPKny~aW~hR~wlL~~l~~~~~~~EL~~~~ 149 (349)
T 3q7a_A 70 SERALELTEIIVRMNPAHYTVWQYRFSLLTSLNKSLEDELRLMNEFAVQNLKSYQVWHHRLLLLDRISPQDPVSEIEYIH 149 (349)
T ss_dssp SHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHTTCCCHHHHHHHHHHHHHHCCSCCHHHHHHHH
T ss_pred CHHHHHHHHHHHHhCchhHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHhcCCChHHHHHHHH
Confidence 478999999999999999999999999999999 599999999999999999999999999999998 8 9999999999
Q ss_pred HHHhhCCCChHHHHHHHHHHHhhhcccccccccchhhhhHHHhcCCHH--------HHHHHHHHHHhcCCCCHHHHHHHH
Q 012143 225 DLILKDQNHPAALINYAALLLCKYGSVLAGAGANTGEGACLDQASAVN--------VAKECLLAALKADPKAAHIWANLA 296 (470)
Q Consensus 225 ~~l~~~p~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--------~A~~~~~~~~~~~p~~~~~~~~la 296 (470)
+++..+|.+..+|...+.++.. .|.++ ++++++.++++.+|.+..+|..++
T Consensus 150 k~L~~dpkNy~AW~~R~wvl~~---------------------l~~~~~~~~~~~~eELe~~~k~I~~dp~N~SAW~~R~ 208 (349)
T 3q7a_A 150 GSLLPDPKNYHTWAYLHWLYSH---------------------FSTLGRISEAQWGSELDWCNEMLRVDGRNNSAWGWRW 208 (349)
T ss_dssp HHTSSCTTCHHHHHHHHHHHHH---------------------HHHTTCCCHHHHHHHHHHHHHHHHHCTTCHHHHHHHH
T ss_pred HHHHhCCCCHHHHHHHHHHHHH---------------------hccccccchhhHHHHHHHHHHHHHhCCCCHHHHHHHH
Confidence 9999999999999999988863 34444 999999999999999999999999
Q ss_pred HHHHHcCC-------hhHHHHHHHHHHhcCCCcccHHHHHH
Q 012143 297 NAYYLTGD-------HRSSGKCLEKAAKLEPNCMSTRYAVA 330 (470)
Q Consensus 297 ~~~~~~g~-------~~~A~~~~~~a~~~~p~~~~~~~~l~ 330 (470)
.++...++ ++++++++++++..+|++..+|+.+.
T Consensus 209 ~lL~~l~~~~~~~~~~~eELe~~~~aI~~~P~n~SaW~Ylr 249 (349)
T 3q7a_A 209 YLRVSRPGAETSSRSLQDELIYILKSIHLIPHNVSAWNYLR 249 (349)
T ss_dssp HHHTTSTTCCCCHHHHHHHHHHHHHHHHHCTTCHHHHHHHH
T ss_pred HHHHhccccccchHHHHHHHHHHHHHHHhCCCCHHHHHHHH
Confidence 99999987 78999999999999999999887643
|
| >3qou_A Protein YBBN; thioredoxin-like fold, tetratricopeptide repeat, lysine dimethylation, protein binding; HET: MLY; 1.80A {Escherichia coli} PDB: 3qdn_A* | Back alignment and structure |
|---|
Probab=99.78 E-value=1.1e-17 Score=146.36 Aligned_cols=140 Identities=14% Similarity=0.112 Sum_probs=111.0
Q ss_pred CccchHHHHHHHHHHHHcCChHHHHHHHHHHhhcCCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCChHHHHHHH
Q 012143 162 DTRQAVVWNTLGLILLKSGRLQSSISVLSSLLAVDPNNCDCIGNLGIAYFQSGDMEQSAKCFQDLILKDQNHPAALINYA 241 (470)
Q Consensus 162 ~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~l~ 241 (470)
.|.++..++.+|..+...|++++|+..|+++++.+|+++.++..+|.++...|++++|+..+++++..+|+........+
T Consensus 113 lp~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~P~~~~a~~~la~~~~~~g~~~~A~~~l~~~~~~~p~~~~~~~~~~ 192 (287)
T 3qou_A 113 LPREEELXAQQAMQLMQESNYTDALPLLXDAWQLSNQNGEIGLLLAETLIALNRSEDAEAVLXTIPLQDQDTRYQGLVAQ 192 (287)
T ss_dssp SCCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTTSCHHHHHHHHHHHHHTTCHHHHHHHHTTSCGGGCSHHHHHHHHH
T ss_pred cCCchhhHHHHHHHHHhCCCHHHHHHHHHHHHHhCCcchhHHHHHHHHHHHCCCHHHHHHHHHhCchhhcchHHHHHHHH
Confidence 37788888888888888888888888888888888888888888888888888888888888888888885544444333
Q ss_pred HHHHhhhcccccccccchhhhhHHHhcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCChhHHHHHHHHHHhcCCC
Q 012143 242 ALLLCKYGSVLAGAGANTGEGACLDQASAVNVAKECLLAALKADPKAAHIWANLANAYYLTGDHRSSGKCLEKAAKLEPN 321 (470)
Q Consensus 242 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~p~ 321 (470)
..+. ..++.++|+..|++++..+|+++.+++.+|.++...|++++|+..|.++++.+|+
T Consensus 193 ~~l~---------------------~~~~~~~a~~~l~~al~~~P~~~~~~~~la~~l~~~g~~~~A~~~l~~~l~~~p~ 251 (287)
T 3qou_A 193 IELL---------------------XQAADTPEIQQLQQQVAENPEDAALATQLALQLHQVGRNEEALELLFGHLRXDLT 251 (287)
T ss_dssp HHHH---------------------HHHTSCHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT
T ss_pred HHHH---------------------hhcccCccHHHHHHHHhcCCccHHHHHHHHHHHHHcccHHHHHHHHHHHHhcccc
Confidence 3333 4666777788888888888888888888888888888888888888888877776
Q ss_pred c
Q 012143 322 C 322 (470)
Q Consensus 322 ~ 322 (470)
+
T Consensus 252 ~ 252 (287)
T 3qou_A 252 A 252 (287)
T ss_dssp G
T ss_pred c
Confidence 4
|
| >3q7a_A Farnesyltransferase alpha subunit; protein prenyltransferase, transferase-transferase inhibitor; HET: SUC 3FX FPP 778; 2.00A {Cryptococcus neoformans} PDB: 3q73_A* 3q78_A* 3q79_A* 3q75_A* 3q7f_A* 3sfx_A* 3sfy_A* | Back alignment and structure |
|---|
Probab=99.78 E-value=7.1e-18 Score=147.58 Aligned_cols=253 Identities=12% Similarity=0.050 Sum_probs=183.8
Q ss_pred hhhhcChhhHHHHHHHHHHhCCCChhHHHHHHHHHHHhC-ChhHHHHHHHHHHHHHhhhhcccchhhhHHHHHHhhhccc
Q 012143 51 SSREEKVSSLKTGLVHVARKMPKNAHAHFLLGLMYQRLG-QPLKAVSSYEKAEEILLRCEADIARPELLSLVQIHHAQCL 129 (470)
Q Consensus 51 ~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~l~~~~~~~g-~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~ 129 (470)
....+..++|...+.+++..+|++..+|..++.+....| .+++++.++.+++..+|++. .+|...+.
T Consensus 64 ~~~~e~se~AL~lt~~~L~~nP~~ytaWn~R~~iL~~l~~~l~eEL~~~~~~L~~nPKny------------~aW~hR~w 131 (349)
T 3q7a_A 64 AAKEEKSERALELTEIIVRMNPAHYTVWQYRFSLLTSLNKSLEDELRLMNEFAVQNLKSY------------QVWHHRLL 131 (349)
T ss_dssp HHTTCCSHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHTTCCCH------------HHHHHHHH
T ss_pred HHhCCCCHHHHHHHHHHHHhCchhHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHhCCCcH------------HHHHHHHH
Confidence 445556678888888888888888888888888888888 48888888888888877642 33344444
Q ss_pred ccccc-CCCccccccCcccHHHHHHHHHHhhhcCccchHHHHHHHHHHHHcCChH--------HHHHHHHHHhhcCCCCh
Q 012143 130 LPESS-GDNSLDKELEPEELEEILSKLKESMQSDTRQAVVWNTLGLILLKSGRLQ--------SSISVLSSLLAVDPNNC 200 (470)
Q Consensus 130 ~~~~~-~~~~~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~~~~~--------~A~~~~~~a~~~~~~~~ 200 (470)
++..+ + .++++++..+.+++..+|.+..+|..++.+....|.++ +++++++++++.+|.+.
T Consensus 132 lL~~l~~----------~~~~~EL~~~~k~L~~dpkNy~AW~~R~wvl~~l~~~~~~~~~~~~eELe~~~k~I~~dp~N~ 201 (349)
T 3q7a_A 132 LLDRISP----------QDPVSEIEYIHGSLLPDPKNYHTWAYLHWLYSHFSTLGRISEAQWGSELDWCNEMLRVDGRNN 201 (349)
T ss_dssp HHHHHCC----------SCCHHHHHHHHHHTSSCTTCHHHHHHHHHHHHHHHHTTCCCHHHHHHHHHHHHHHHHHCTTCH
T ss_pred HHHHhcC----------CChHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhccccccchhhHHHHHHHHHHHHHhCCCCH
Confidence 43332 2 03479999999999999999999999999999999888 99999999999999999
Q ss_pred HHHHHHHHHHHHcCC-------HHHHHHHHHHHHhhCCCChHHHHHHHHHHHhhhccccc-ccccchhhhhHHHhcCCHH
Q 012143 201 DCIGNLGIAYFQSGD-------MEQSAKCFQDLILKDQNHPAALINYAALLLCKYGSVLA-GAGANTGEGACLDQASAVN 272 (470)
Q Consensus 201 ~~~~~la~~~~~~g~-------~~~A~~~~~~~l~~~p~~~~~~~~l~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~ 272 (470)
.+|..++.++...+. ++++++++++++..+|++..+|..+..++......... -...+..-|... .-...
T Consensus 202 SAW~~R~~lL~~l~~~~~~~~~~~eELe~~~~aI~~~P~n~SaW~Ylr~Ll~~~~~~~~~~~~~~~~~~~~~~--~~~~~ 279 (349)
T 3q7a_A 202 SAWGWRWYLRVSRPGAETSSRSLQDELIYILKSIHLIPHNVSAWNYLRGFLKHFSLPLVPILPAILPYTASKL--NPDIE 279 (349)
T ss_dssp HHHHHHHHHHTTSTTCCCCHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCCSGGGHHHHGGGTC----------
T ss_pred HHHHHHHHHHHhccccccchHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhcCCCcccccccccccccccc--cccch
Confidence 999999999999987 79999999999999999999999888777642111000 000000000000 00012
Q ss_pred HHHHHHHHHHhc------CCCCHHHHHHHHHHHHHcCChhHHHHHHHHHH-hcCCCcccHHH
Q 012143 273 VAKECLLAALKA------DPKAAHIWANLANAYYLTGDHRSSGKCLEKAA-KLEPNCMSTRY 327 (470)
Q Consensus 273 ~A~~~~~~~~~~------~p~~~~~~~~la~~~~~~g~~~~A~~~~~~a~-~~~p~~~~~~~ 327 (470)
.-.......+.. .+.++.++..++.+|...|+.++|.++++... +.+|-....|.
T Consensus 280 ~~~~~~~~~~~~~~~~~~~~~s~~al~~l~d~~~~~~~~~~a~~~~~~l~~~~dpir~~yw~ 341 (349)
T 3q7a_A 280 TVEAFGFPMPSDPLPEDTPLPVPLALEYLADSFIEQNRVDDAAKVFEKLSSEYDQMRAGYWE 341 (349)
T ss_dssp ------CCCCC-CCCSSCCSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCGGGHHHHH
T ss_pred hHHHHHHHHHhcccccccCCCcHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhhChHHHHHHH
Confidence 222222222222 25688999999999999999999999999986 56776554443
|
| >1p5q_A FKBP52, FK506-binding protein 4; isomerase; 2.80A {Homo sapiens} SCOP: a.118.8.1 d.26.1.1 PDB: 1qz2_A | Back alignment and structure |
|---|
Probab=99.78 E-value=9e-19 Score=156.83 Aligned_cols=203 Identities=16% Similarity=0.120 Sum_probs=168.8
Q ss_pred hhhhhhhhHHHHHHHHHH----HHhcCCCCcchhhhcccchhh------------hhcChhhHHHHHHHHHHhCCCChhH
Q 012143 14 KINKLGKCRSRISSKMDS----ALEFGVDADGDQSGLGTSSSS------------REEKVSSLKTGLVHVARKMPKNAHA 77 (470)
Q Consensus 14 ~~~~~g~~~~a~~~~~~~----~l~~~p~~~~~~~~~~~~~~~------------~~~~~~~A~~~~~~~l~~~p~~~~~ 77 (470)
.+.-.+.+++++ ..+.. ++.+.|+. +|...|.. .. ..+++++|+..+++++..+|.++.+
T Consensus 74 ~~~~~~~~e~al-~~~~~Ge~~~l~i~p~~--ayg~~g~~-~~~i~~~~~l~f~~~L~~~~~A~~~~~~a~~~~p~~a~~ 149 (336)
T 1p5q_A 74 NLDLPYGLERAI-QRMEKGEHSIVYLKPSY--AFGSVGKE-KFQIPPNAELKYELHLKSFEKAKESWEMNSEEKLEQSTI 149 (336)
T ss_dssp GGTCCHHHHHHH-TTCCTTCEEEEEECTTT--TTTTTCBG-GGTBCSSCCEEEEEEEEEEECCCCGGGCCHHHHHHHHHH
T ss_pred ccccchHHHHHH-hcCCCCCeEEEEECCcc--ccCcCCCC-ccCCCCCCeEEEEEEEeecccccchhcCCHHHHHHHHHH
Confidence 333456788888 88888 89999987 56666654 32 6688899999999999999999999
Q ss_pred HHHHHHHHHHhCChhHHHHHHHHHHHHHhhhhcccchhhhHHHHHHhhhccccccccCCCccccccCcccHHHHHHHHHH
Q 012143 78 HFLLGLMYQRLGQPLKAVSSYEKAEEILLRCEADIARPELLSLVQIHHAQCLLPESSGDNSLDKELEPEELEEILSKLKE 157 (470)
Q Consensus 78 ~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~ 157 (470)
+..+|.++...|++++|+..|++++.+.|..... . . + .
T Consensus 150 ~~~~g~~~~~~g~~~~A~~~y~~Al~~~p~~~~~--------------------------------~-~--~-------~ 187 (336)
T 1p5q_A 150 VKERGTVYFKEGKYKQALLQYKKIVSWLEYESSF--------------------------------S-N--E-------E 187 (336)
T ss_dssp HHHHHHHHHHHTCHHHHHHHHHHHHHHTTTCCCC--------------------------------C-S--H-------H
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHHHhhccccC--------------------------------C-h--H-------H
Confidence 9999999999999999999999999997764210 0 0 1 1
Q ss_pred hhhcCccchHHHHHHHHHHHHcCChHHHHHHHHHHhhcCCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCChHHH
Q 012143 158 SMQSDTRQAVVWNTLGLILLKSGRLQSSISVLSSLLAVDPNNCDCIGNLGIAYFQSGDMEQSAKCFQDLILKDQNHPAAL 237 (470)
Q Consensus 158 ~~~~~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~ 237 (470)
.....|....++.++|.++..+|++++|+.+|+++++++|+++.+++.+|.++..+|++++|+..|+++++++|++..++
T Consensus 188 ~~~~~~~~~~~~~nla~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~P~~~~a~ 267 (336)
T 1p5q_A 188 AQKAQALRLASHLNLAMCHLKLQAFSAAIESCNKALELDSNNEKGLSRRGEAHLAVNDFELARADFQKVLQLYPNNKAAK 267 (336)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSSCHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCCCHHHH
Confidence 22334556789999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHhhhcccccccccchhhhhHHHhcCCHHHH-HHHHHHHHh
Q 012143 238 INYAALLLCKYGSVLAGAGANTGEGACLDQASAVNVA-KECLLAALK 283 (470)
Q Consensus 238 ~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A-~~~~~~~~~ 283 (470)
..++.++. ..|++++| ...|.+++.
T Consensus 268 ~~l~~~~~---------------------~~~~~~~a~~~~~~~~~~ 293 (336)
T 1p5q_A 268 TQLAVCQQ---------------------RIRRQLAREKKLYANMFE 293 (336)
T ss_dssp HHHHHHHH---------------------HHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHH---------------------HHHHHHHHHHHHHHHHHH
Confidence 99988887 57778877 445665553
|
| >2vsy_A XCC0866; transferase, glycosyl transferase, GT-B, OGT, protein O-GLCN; HET: NHE; 2.10A {Xanthomonas campestris PV} PDB: 2jlb_A* 2xgm_A* 2xgo_A* 2xgs_A* 2vsn_A* | Back alignment and structure |
|---|
Probab=99.77 E-value=9.7e-18 Score=162.05 Aligned_cols=165 Identities=15% Similarity=0.105 Sum_probs=96.7
Q ss_pred hcChhhHHHHHHHHHHhCCCChhHHHHHHHHHHHhCChhHHHHHHHHHHHHHhhhhcccchhhhHHHHHHhhhccccccc
Q 012143 54 EEKVSSLKTGLVHVARKMPKNAHAHFLLGLMYQRLGQPLKAVSSYEKAEEILLRCEADIARPELLSLVQIHHAQCLLPES 133 (470)
Q Consensus 54 ~~~~~~A~~~~~~~l~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 133 (470)
.|++++|+..|+++++.+|+++.+++.+|.++...|++++|+..|+++++.
T Consensus 2 ~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~----------------------------- 52 (568)
T 2vsy_A 2 TADGPRELLQLRAAVRHRPQDFVAWLMLADAELGMGDTTAGEMAVQRGLAL----------------------------- 52 (568)
T ss_dssp -------------------CCHHHHHHHHHHHHHHTCHHHHHHHHHHHHTT-----------------------------
T ss_pred CccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh-----------------------------
Confidence 467788888888888888888888888888888888888777777777654
Q ss_pred cCCCccccccCcccHHHHHHHHHHhhhcCccchHHHHHHHHHHHHcCChHHHHHHHHHHhhcCCCChHHHHHHHHHHHHc
Q 012143 134 SGDNSLDKELEPEELEEILSKLKESMQSDTRQAVVWNTLGLILLKSGRLQSSISVLSSLLAVDPNNCDCIGNLGIAYFQS 213 (470)
Q Consensus 134 ~~~~~~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~la~~~~~~ 213 (470)
+|+++.++..+|.++..+|++++|+.+|+++++.+|+++.++..+|.++...
T Consensus 53 ----------------------------~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~ 104 (568)
T 2vsy_A 53 ----------------------------HPGHPEAVARLGRVRWTQQRHAEAAVLLQQASDAAPEHPGIALWLGHALEDA 104 (568)
T ss_dssp ----------------------------STTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHT
T ss_pred ----------------------------CCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHc
Confidence 3445556666666666666666666666666666666666666666666666
Q ss_pred CCHHHHHHHHHHHHhhCCCChHHHHHHHHHHHhhhcccccccccchhhhhHHHhc---CCHHHHHHHHHHHHhcCCCCHH
Q 012143 214 GDMEQSAKCFQDLILKDQNHPAALINYAALLLCKYGSVLAGAGANTGEGACLDQA---SAVNVAKECLLAALKADPKAAH 290 (470)
Q Consensus 214 g~~~~A~~~~~~~l~~~p~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~A~~~~~~~~~~~p~~~~ 290 (470)
|++++|++.|+++++.+|++..++..++.++. .. |++++|+..++++++.+|.+..
T Consensus 105 g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~---------------------~~~~~g~~~~A~~~~~~al~~~p~~~~ 163 (568)
T 2vsy_A 105 GQAEAAAAAYTRAHQLLPEEPYITAQLLNWRR---------------------RLCDWRALDVLSAQVRAAVAQGVGAVE 163 (568)
T ss_dssp TCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHH---------------------HTTCCTTHHHHHHHHHHHHHHTCCCSC
T ss_pred CCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHH---------------------HhhccccHHHHHHHHHHHHhcCCcccC
Confidence 66666666666666666666666666655555 35 6666666666666666666555
Q ss_pred HHHHHH
Q 012143 291 IWANLA 296 (470)
Q Consensus 291 ~~~~la 296 (470)
.+..++
T Consensus 164 ~~~~l~ 169 (568)
T 2vsy_A 164 PFAFLS 169 (568)
T ss_dssp HHHHTT
T ss_pred hHHHhC
Confidence 554444
|
| >2vgx_A Chaperone SYCD; alternative dimer assembly, tetratricopeptide repeat, type III secretion; HET: MLY; 1.95A {Yersinia enterocolitica} SCOP: k.38.1.1 PDB: 2vgx_B* 2vgy_A* | Back alignment and structure |
|---|
Probab=99.77 E-value=2.9e-18 Score=133.80 Aligned_cols=118 Identities=15% Similarity=0.148 Sum_probs=86.8
Q ss_pred HHHHHhhhcCccchHHHHHHHHHHHHcCChHHHHHHHHHHhhcCCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCC
Q 012143 153 SKLKESMQSDTRQAVVWNTLGLILLKSGRLQSSISVLSSLLAVDPNNCDCIGNLGIAYFQSGDMEQSAKCFQDLILKDQN 232 (470)
Q Consensus 153 ~~~~~~~~~~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~ 232 (470)
..|++++..+|+++.+++.+|.++...|++++|+..|++++..+|.++.+|+.+|.++...|++++|+..|++++.++|+
T Consensus 8 ~~~~~al~~~p~~~~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~p~ 87 (148)
T 2vgx_A 8 GTIAMLNEISSDTLEQLYSLAFNQYQSGXYEDAHXVFQALCVLDHYDSRFFLGLGACRQAMGQYDLAIHSYSYGAVMDIX 87 (148)
T ss_dssp CSHHHHTTCCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTT
T ss_pred hhHHHHHcCCHhhHHHHHHHHHHHHHcCChHHHHHHHHHHHHcCcccHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCC
Confidence 34666777777777777777777777777777777777777777777777777777777777777777777777777777
Q ss_pred ChHHHHHHHHHHHhhhcccccccccchhhhhHHHhcCCHHHHHHHHHHHHhcCCCCHHH
Q 012143 233 HPAALINYAALLLCKYGSVLAGAGANTGEGACLDQASAVNVAKECLLAALKADPKAAHI 291 (470)
Q Consensus 233 ~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~ 291 (470)
++.+++.+|.++. ..|++++|+.+|++++++.|+++..
T Consensus 88 ~~~~~~~lg~~~~---------------------~~g~~~~A~~~~~~al~~~p~~~~~ 125 (148)
T 2vgx_A 88 EPRFPFHAAECLL---------------------QXGELAEAESGLFLAQELIANXPEF 125 (148)
T ss_dssp CTHHHHHHHHHHH---------------------HTTCHHHHHHHHHHHHHHHTTCGGG
T ss_pred CchHHHHHHHHHH---------------------HcCCHHHHHHHHHHHHHHCcCCCcc
Confidence 7777777766666 5777777777777777777665544
|
| >3rjv_A Putative SEL1 repeat protein; alpha-alpha superhelix, structural genomics, joint center FO structural genomics, JCSG; HET: MSE; 1.65A {Klebsiella pneumoniae subsp} | Back alignment and structure |
|---|
Probab=99.75 E-value=7.2e-17 Score=134.48 Aligned_cols=161 Identities=12% Similarity=0.047 Sum_probs=92.8
Q ss_pred hhHHHHHHHHHHhCCCChhHHHHHHHHHHHhCChhHHHHHHHHHHHHHhhhhcccchhhhHHHHHHhhhccccccccCCC
Q 012143 58 SSLKTGLVHVARKMPKNAHAHFLLGLMYQRLGQPLKAVSSYEKAEEILLRCEADIARPELLSLVQIHHAQCLLPESSGDN 137 (470)
Q Consensus 58 ~~A~~~~~~~l~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 137 (470)
.+|...|+++.+. .++.+++.+|.+|...+++++|+.+|+++.+... ..+++.++.++.. +.
T Consensus 3 ~eA~~~~~~aa~~--g~~~a~~~lg~~~~~~~~~~~A~~~~~~a~~~g~--------------~~a~~~lg~~y~~-~g- 64 (212)
T 3rjv_A 3 TEPGSQYQQQAEA--GDRRAQYYLADTWVSSGDYQKAEYWAQKAAAQGD--------------GDALALLAQLKIR-NP- 64 (212)
T ss_dssp -CTTHHHHHHHHT--TCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHTTC--------------HHHHHHHHHHTTS-ST-
T ss_pred chHHHHHHHHHHC--CCHHHHHHHHHHHhcCCCHHHHHHHHHHHHHcCC--------------HHHHHHHHHHHHc-CC-
Confidence 3577888888764 7899999999999999999999999999876310 1222333333322 10
Q ss_pred ccccccCcccHHHHHHHHHHhhhcCccchHHHHHHHHHHHH----cCChHHHHHHHHHHhhcCC--CChHHHHHHHHHHH
Q 012143 138 SLDKELEPEELEEILSKLKESMQSDTRQAVVWNTLGLILLK----SGRLQSSISVLSSLLAVDP--NNCDCIGNLGIAYF 211 (470)
Q Consensus 138 ~~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~----~~~~~~A~~~~~~a~~~~~--~~~~~~~~la~~~~ 211 (470)
...++++|+.+|+++.+ +.++.+++.+|.+|.. .+++++|+.+|+++++..| .++.+++.+|.+|.
T Consensus 65 ------~~~~~~~A~~~~~~A~~--~g~~~a~~~Lg~~y~~g~g~~~d~~~A~~~~~~A~~~~~~~~~~~a~~~Lg~~y~ 136 (212)
T 3rjv_A 65 ------QQADYPQARQLAEKAVE--AGSKSGEIVLARVLVNRQAGATDVAHAITLLQDAARDSESDAAVDAQMLLGLIYA 136 (212)
T ss_dssp ------TSCCHHHHHHHHHHHHH--TTCHHHHHHHHHHHTCGGGSSCCHHHHHHHHHHHTSSTTSHHHHHHHHHHHHHHH
T ss_pred ------CCCCHHHHHHHHHHHHH--CCCHHHHHHHHHHHHcCCCCccCHHHHHHHHHHHHHcCCCcchHHHHHHHHHHHH
Confidence 01145555555555532 3445555555555554 5555555555555555544 23455555555555
Q ss_pred H----cCCHHHHHHHHHHHHhhCCCChHHHHHHHHHHH
Q 012143 212 Q----SGDMEQSAKCFQDLILKDQNHPAALINYAALLL 245 (470)
Q Consensus 212 ~----~g~~~~A~~~~~~~l~~~p~~~~~~~~l~~~~~ 245 (470)
. .+++++|+.+|+++++. |.++.+++.+|.++.
T Consensus 137 ~g~g~~~d~~~A~~~~~~A~~~-~~~~~a~~~Lg~~y~ 173 (212)
T 3rjv_A 137 SGVHGPEDDVKASEYFKGSSSL-SRTGYAEYWAGMMFQ 173 (212)
T ss_dssp HTSSSSCCHHHHHHHHHHHHHT-SCTTHHHHHHHHHHH
T ss_pred cCCCCCCCHHHHHHHHHHHHHc-CCCHHHHHHHHHHHH
Confidence 5 55555555555555554 444445555554444
|
| >1p5q_A FKBP52, FK506-binding protein 4; isomerase; 2.80A {Homo sapiens} SCOP: a.118.8.1 d.26.1.1 PDB: 1qz2_A | Back alignment and structure |
|---|
Probab=99.75 E-value=4.2e-18 Score=152.51 Aligned_cols=154 Identities=11% Similarity=0.105 Sum_probs=144.3
Q ss_pred CcccHHHHHHHHHHhhhcCccchHHHHHHHHHHHHcCChHHHHHHHHHHhhcCCCC---------------hHHHHHHHH
Q 012143 144 EPEELEEILSKLKESMQSDTRQAVVWNTLGLILLKSGRLQSSISVLSSLLAVDPNN---------------CDCIGNLGI 208 (470)
Q Consensus 144 ~~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~---------------~~~~~~la~ 208 (470)
..+++++|+..+++++...|.++.++..+|.+++..|++++|+..|++++.++|.+ ..++.++|.
T Consensus 125 ~L~~~~~A~~~~~~a~~~~p~~a~~~~~~g~~~~~~g~~~~A~~~y~~Al~~~p~~~~~~~~~~~~~~~~~~~~~~nla~ 204 (336)
T 1p5q_A 125 HLKSFEKAKESWEMNSEEKLEQSTIVKERGTVYFKEGKYKQALLQYKKIVSWLEYESSFSNEEAQKAQALRLASHLNLAM 204 (336)
T ss_dssp EEEEEECCCCGGGCCHHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHTTTCCCCCSHHHHHHHHHHHHHHHHHHH
T ss_pred EEeecccccchhcCCHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHhhccccCChHHHHHHHHHHHHHHHHHHH
Confidence 45677888999999999999999999999999999999999999999999999998 589999999
Q ss_pred HHHHcCCHHHHHHHHHHHHhhCCCChHHHHHHHHHHHhhhcccccccccchhhhhHHHhcCCHHHHHHHHHHHHhcCCCC
Q 012143 209 AYFQSGDMEQSAKCFQDLILKDQNHPAALINYAALLLCKYGSVLAGAGANTGEGACLDQASAVNVAKECLLAALKADPKA 288 (470)
Q Consensus 209 ~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~p~~ 288 (470)
++..+|++++|+..|+++++++|+++.+++.+|.++. ..|++++|+..|+++++++|++
T Consensus 205 ~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~---------------------~~g~~~~A~~~~~~al~l~P~~ 263 (336)
T 1p5q_A 205 CHLKLQAFSAAIESCNKALELDSNNEKGLSRRGEAHL---------------------AVNDFELARADFQKVLQLYPNN 263 (336)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHH---------------------HTTCHHHHHHHHHHHHHHCSSC
T ss_pred HHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHH---------------------HCCCHHHHHHHHHHHHHHCCCC
Confidence 9999999999999999999999999999999998887 7999999999999999999999
Q ss_pred HHHHHHHHHHHHHcCChhHH-HHHHHHHHhc
Q 012143 289 AHIWANLANAYYLTGDHRSS-GKCLEKAAKL 318 (470)
Q Consensus 289 ~~~~~~la~~~~~~g~~~~A-~~~~~~a~~~ 318 (470)
..++..++.++..+|++++| ...|++++..
T Consensus 264 ~~a~~~l~~~~~~~~~~~~a~~~~~~~~~~~ 294 (336)
T 1p5q_A 264 KAAKTQLAVCQQRIRRQLAREKKLYANMFER 294 (336)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999 5577777654
|
| >4f3v_A ESX-1 secretion system protein ECCA1; tetratricopeptide repeat, TPR domain, ATPase, protein secret protein transport; 2.00A {Mycobacterium tuberculosis} | Back alignment and structure |
|---|
Probab=99.75 E-value=2.3e-17 Score=139.56 Aligned_cols=211 Identities=10% Similarity=-0.032 Sum_probs=170.7
Q ss_pred hhcChhhHHHHHHHHHHhCCCChhHHHHH-------HHHHHHhCChhHHHHHHHHHHHHHhhhhcccch-hhh-------
Q 012143 53 REEKVSSLKTGLVHVARKMPKNAHAHFLL-------GLMYQRLGQPLKAVSSYEKAEEILLRCEADIAR-PEL------- 117 (470)
Q Consensus 53 ~~~~~~~A~~~~~~~l~~~p~~~~~~~~l-------~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~-~~~------- 117 (470)
..++...|...|.+++..+|+.+++|..+ +.++...+++.+++..+++++.+.|..-..... ...
T Consensus 18 ~~~d~~~A~~~F~~a~~~dP~~~Daw~g~~a~g~~~~~~L~~~~r~~~a~~~~~~~l~l~p~~l~a~~~~~g~y~~~~~~ 97 (282)
T 4f3v_A 18 LPMSEARSLDLFTEITNYDESACDAWIGRIRCGDTDRVTLFRAWYSRRNFGQLSGSVQISMSTLNARIAIGGLYGDITYP 97 (282)
T ss_dssp TTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHTTCCCHHHHHHHHHTGGGTTHHHHTTTCCGGGGCCEEECCTTTCCCEEE
T ss_pred cCCCHHHHHHHHHHHHHhChhhhHHHHhHHHccCCcHHHHHHHHHHHHHHHHHHHHhcCChhhhhhhhccCCcccccccc
Confidence 47899999999999999999999999999 899999999999999999999987765322211 110
Q ss_pred -HHHHHHhhhccccccccCCCccccccCcccHHHHHHHHHHhhhcCccchHHHHHHHHHHHHcCChHHHHHHHHHHhhcC
Q 012143 118 -LSLVQIHHAQCLLPESSGDNSLDKELEPEELEEILSKLKESMQSDTRQAVVWNTLGLILLKSGRLQSSISVLSSLLAVD 196 (470)
Q Consensus 118 -~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~ 196 (470)
.+--.+...++.+ +...|++++|.+.|...+...|.+. +.+.+|.++.+.++|++|+..|+++....
T Consensus 98 v~~r~dl~LayA~~-----------L~~~g~y~eA~~~l~~~~~~~p~~~-~~~~~a~l~~~~~r~~dA~~~l~~a~~~~ 165 (282)
T 4f3v_A 98 VTSPLAITMGFAAC-----------EAAQGNYADAMEALEAAPVAGSEHL-VAWMKAVVYGAAERWTDVIDQVKSAGKWP 165 (282)
T ss_dssp CSSHHHHHHHHHHH-----------HHHHTCHHHHHHHHTSSCCTTCHHH-HHHHHHHHHHHTTCHHHHHHHHTTGGGCS
T ss_pred cCCHhHHHHHHHHH-----------HHHCCCHHHHHHHHHHHHhcCCchH-HHHHHHHHHHHcCCHHHHHHHHHHhhccC
Confidence 0000111112222 4567888999999999999999999 99999999999999999999999887754
Q ss_pred CCC--hHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC--CC-ChHHHHHHHHHHHhhhcccccccccchhhhhHHHhcCCH
Q 012143 197 PNN--CDCIGNLGIAYFQSGDMEQSAKCFQDLILKD--QN-HPAALINYAALLLCKYGSVLAGAGANTGEGACLDQASAV 271 (470)
Q Consensus 197 ~~~--~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~--p~-~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 271 (470)
+.. ..+++.+|.++..+|++++|+..|++++... |. .+.+++.+|.++. +.|+.
T Consensus 166 d~~~~~~a~~~LG~al~~LG~~~eAl~~l~~a~~g~~~P~~~~da~~~~glaL~---------------------~lGr~ 224 (282)
T 4f3v_A 166 DKFLAGAAGVAHGVAAANLALFTEAERRLTEANDSPAGEACARAIAWYLAMARR---------------------SQGNE 224 (282)
T ss_dssp CHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTSTTTTTTHHHHHHHHHHHHH---------------------HHTCH
T ss_pred CcccHHHHHHHHHHHHHHCCCHHHHHHHHHHHhcCCCCccccHHHHHHHHHHHH---------------------HcCCH
Confidence 221 3589999999999999999999999998543 54 4567777777776 79999
Q ss_pred HHHHHHHHHHHhcCCCCHHHHHHHHH
Q 012143 272 NVAKECLLAALKADPKAAHIWANLAN 297 (470)
Q Consensus 272 ~~A~~~~~~~~~~~p~~~~~~~~la~ 297 (470)
++|...|++++..+|+ ..++..|..
T Consensus 225 deA~~~l~~a~a~~P~-~~~~~aL~~ 249 (282)
T 4f3v_A 225 SAAVALLEWLQTTHPE-PKVAAALKD 249 (282)
T ss_dssp HHHHHHHHHHHHHSCC-HHHHHHHHC
T ss_pred HHHHHHHHHHHhcCCc-HHHHHHHhC
Confidence 9999999999999999 777766643
|
| >2vgx_A Chaperone SYCD; alternative dimer assembly, tetratricopeptide repeat, type III secretion; HET: MLY; 1.95A {Yersinia enterocolitica} SCOP: k.38.1.1 PDB: 2vgx_B* 2vgy_A* | Back alignment and structure |
|---|
Probab=99.75 E-value=1.4e-17 Score=129.87 Aligned_cols=121 Identities=16% Similarity=0.124 Sum_probs=114.5
Q ss_pred HHHHHHHHhhcCCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCChHHHHHHHHHHHhhhcccccccccchhhhhH
Q 012143 185 SISVLSSLLAVDPNNCDCIGNLGIAYFQSGDMEQSAKCFQDLILKDQNHPAALINYAALLLCKYGSVLAGAGANTGEGAC 264 (470)
Q Consensus 185 A~~~~~~a~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~ 264 (470)
+-..|++++.++|++..+++.+|.++...|++++|+..|++++..+|.++.++..+|.++.
T Consensus 6 ~~~~~~~al~~~p~~~~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~------------------- 66 (148)
T 2vgx_A 6 GGGTIAMLNEISSDTLEQLYSLAFNQYQSGXYEDAHXVFQALCVLDHYDSRFFLGLGACRQ------------------- 66 (148)
T ss_dssp CCCSHHHHTTCCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHH-------------------
T ss_pred hhhhHHHHHcCCHhhHHHHHHHHHHHHHcCChHHHHHHHHHHHHcCcccHHHHHHHHHHHH-------------------
Confidence 3457889999999999999999999999999999999999999999999999999998887
Q ss_pred HHhcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCChhHHHHHHHHHHhcCCCcccHH
Q 012143 265 LDQASAVNVAKECLLAALKADPKAAHIWANLANAYYLTGDHRSSGKCLEKAAKLEPNCMSTR 326 (470)
Q Consensus 265 ~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~p~~~~~~ 326 (470)
..|++++|+.+|++++.++|+++.+++.+|.++...|++++|+..|++++++.|+++...
T Consensus 67 --~~g~~~~A~~~~~~al~l~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~ 126 (148)
T 2vgx_A 67 --AMGQYDLAIHSYSYGAVMDIXEPRFPFHAAECLLQXGELAEAESGLFLAQELIANXPEFX 126 (148)
T ss_dssp --HTTCHHHHHHHHHHHHHHSTTCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHTTCGGGH
T ss_pred --HHhhHHHHHHHHHHHHhcCCCCchHHHHHHHHHHHcCCHHHHHHHHHHHHHHCcCCCcch
Confidence 799999999999999999999999999999999999999999999999999999877653
|
| >2xcb_A PCRH, regulatory protein PCRH; protein transport, bacterial toxin, type III secretion, protein binding; 1.85A {Pseudomonas aeruginosa} PDB: 2xcc_A | Back alignment and structure |
|---|
Probab=99.74 E-value=1.7e-17 Score=128.83 Aligned_cols=125 Identities=18% Similarity=0.131 Sum_probs=89.0
Q ss_pred HHHHHhhhcCccchHHHHHHHHHHHHcCChHHHHHHHHHHhhcCCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCC
Q 012143 153 SKLKESMQSDTRQAVVWNTLGLILLKSGRLQSSISVLSSLLAVDPNNCDCIGNLGIAYFQSGDMEQSAKCFQDLILKDQN 232 (470)
Q Consensus 153 ~~~~~~~~~~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~ 232 (470)
..|++++..+|+++..++.+|.++...|++++|+..|++++..+|+++.+|..+|.++...|++++|+..|++++.++|+
T Consensus 5 ~~l~~al~~~p~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~ 84 (142)
T 2xcb_A 5 GTLAMLRGLSEDTLEQLYALGFNQYQAGKWDDAQKIFQALCMLDHYDARYFLGLGACRQSLGLYEQALQSYSYGALMDIN 84 (142)
T ss_dssp ----CCTTCCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT
T ss_pred hhHHHHHcCCHHHHHHHHHHHHHHHHHccHHHHHHHHHHHHHhCCccHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCC
Confidence 35666777777777777777777777777777777777777777777777777777777777777777777777777777
Q ss_pred ChHHHHHHHHHHHhhhcccccccccchhhhhHHHhcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHH
Q 012143 233 HPAALINYAALLLCKYGSVLAGAGANTGEGACLDQASAVNVAKECLLAALKADPKAAHIWANLANA 298 (470)
Q Consensus 233 ~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~la~~ 298 (470)
++.+++.+|.++. ..|++++|+.+|+++++++|+++........+
T Consensus 85 ~~~~~~~lg~~~~---------------------~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~ 129 (142)
T 2xcb_A 85 EPRFPFHAAECHL---------------------QLGDLDGAESGFYSARALAAAQPAHEALAARA 129 (142)
T ss_dssp CTHHHHHHHHHHH---------------------HTTCHHHHHHHHHHHHHHHHTCGGGHHHHHHH
T ss_pred CcHHHHHHHHHHH---------------------HcCCHHHHHHHHHHHHHhCCCCcchHHHHHHH
Confidence 7777777776666 57777777777777777777665554444333
|
| >2fo7_A Synthetic consensus TPR protein; tetratricopeptide repeat, consensus protein, superhelix, de novo protein; 2.30A {Synthetic} SCOP: k.38.1.1 PDB: 2hyz_A | Back alignment and structure |
|---|
Probab=99.74 E-value=1.9e-16 Score=121.71 Aligned_cols=134 Identities=30% Similarity=0.506 Sum_probs=127.4
Q ss_pred HHHHHHHHHHHHcCChHHHHHHHHHHhhcCCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCChHHHHHHHHHHHh
Q 012143 167 VVWNTLGLILLKSGRLQSSISVLSSLLAVDPNNCDCIGNLGIAYFQSGDMEQSAKCFQDLILKDQNHPAALINYAALLLC 246 (470)
Q Consensus 167 ~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~l~~~~~~ 246 (470)
.+++.+|.++...|++++|+..++++++.+|.++.++..+|.++...|++++|+..+++++...|.++..+..++.++.
T Consensus 2 ~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~- 80 (136)
T 2fo7_A 2 EAWYNLGNAYYKQGDYDEAIEYYQKALELDPRSAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPRSAEAWYNLGNAYY- 80 (136)
T ss_dssp HHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHH-
T ss_pred cHHHHHHHHHHHcCcHHHHHHHHHHHHHcCCcchhHHHHHHHHHHHhcCHHHHHHHHHHHHHHCCCchHHHHHHHHHHH-
Confidence 5688999999999999999999999999999999999999999999999999999999999999999988888887776
Q ss_pred hhcccccccccchhhhhHHHhcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCChhHHHHHHHHHHhcCCC
Q 012143 247 KYGSVLAGAGANTGEGACLDQASAVNVAKECLLAALKADPKAAHIWANLANAYYLTGDHRSSGKCLEKAAKLEPN 321 (470)
Q Consensus 247 ~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~p~ 321 (470)
..|++++|+.++++++...|.++.++..+|.++...|++++|...+++++..+|+
T Consensus 81 --------------------~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~ 135 (136)
T 2fo7_A 81 --------------------KQGDYDEAIEYYQKALELDPRSAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPR 135 (136)
T ss_dssp --------------------TTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHSTT
T ss_pred --------------------HhcCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHccHHHHHHHHHHHHccCCC
Confidence 7999999999999999999999999999999999999999999999999999886
|
| >2c2l_A CHIP, carboxy terminus of HSP70-interacting protein; chaperone, E3 ligase, ubiquitinylation, TPR, heat-shock protein complex; 3.3A {Mus musculus} SCOP: a.118.8.1 g.44.1.2 | Back alignment and structure |
|---|
Probab=99.74 E-value=2.1e-17 Score=144.17 Aligned_cols=198 Identities=13% Similarity=0.006 Sum_probs=133.0
Q ss_pred CCChHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCChHHHHHHHHHHHhhhcccccccccchhhhhHHHhcCCHHHHHH
Q 012143 197 PNNCDCIGNLGIAYFQSGDMEQSAKCFQDLILKDQNHPAALINYAALLLCKYGSVLAGAGANTGEGACLDQASAVNVAKE 276 (470)
Q Consensus 197 ~~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~ 276 (470)
|.++..+..+|..+...|++++|+..|++++..+|+++.++..+|.++. ..|++++|+.
T Consensus 1 p~~a~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~---------------------~~~~~~~A~~ 59 (281)
T 2c2l_A 1 SPSAQELKEQGNRLFVGRKYPEAAACYGRAITRNPLVAVYYTNRALCYL---------------------KMQQPEQALA 59 (281)
T ss_dssp CCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSCCHHHHHHHHHHHH---------------------HTTCHHHHHH
T ss_pred ChhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCccHHHHHHHHHHHH---------------------HhcCHHHHHH
Confidence 4566777778888888888888888888888888888877777777776 5778888888
Q ss_pred HHHHHHhcCCCCHHHHHHHHHHHHHcCChhHHHHHHHHHHhcCCCcccHHHHHHHHHHHHhhhccCchHHhhhhHHHHHH
Q 012143 277 CLLAALKADPKAAHIWANLANAYYLTGDHRSSGKCLEKAAKLEPNCMSTRYAVAVSRIKDAERSQEPTEQLSWAGNEMAS 356 (470)
Q Consensus 277 ~~~~~~~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~p~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~ 356 (470)
.++++++++|+++.+++.+|.++..+|++++|+..|+++++++|++...+.......+.
T Consensus 60 ~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~p~~~~~~~~~~~~~~~--------------------- 118 (281)
T 2c2l_A 60 DCRRALELDGQSVKAHFFLGQCQLEMESYDEAIANLQRAYSLAKEQRLNFGDDIPSALR--------------------- 118 (281)
T ss_dssp HHHHHTTSCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCCCCSHHHHHHH---------------------
T ss_pred HHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCccchhhHHHHHHHHHH---------------------
Confidence 88888888888888888888888888888888888888888877653221111000000
Q ss_pred HhhcCCCCCCCcHHHHHHHHHHHhccccHHHHHHHHHHHhcchhhhhHhhHHHHHHHhccHHHHHHHHHHHHhcCCCcHH
Q 012143 357 ILREGDPVQIEPPIAWAGFAAVQKTHHEVAAAFETEENELSKMEECAGAGESAFLDQASAVNVAKECLLAALKADPKAAH 436 (470)
Q Consensus 357 ~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~p~~~~ 436 (470)
......+.. ......+........++.. ..|++++|++.++++++.+|++..
T Consensus 119 ----------------------~~~~~~~~~----~~~~~~~~~~~i~~~l~~l--~~~~~~~A~~~~~~al~~~p~~~~ 170 (281)
T 2c2l_A 119 ----------------------IAKKKRWNS----IEERRIHQESELHSYLTRL--IAAERERELEECQRNHEGHEDDGH 170 (281)
T ss_dssp ----------------------HHHHHHHHH----HHHTCCCCCCHHHHHHHHH--HHHHHHHHHTTTSGGGTTTSCHHH
T ss_pred ----------------------HHHHHHHHH----HHHHHHhhhHHHHHHHHHH--HHHHHHHHHHHHHhhhccccchhh
Confidence 000000000 0001111222222223222 257888999999999999998888
Q ss_pred HHHHHHHHHHHc-CChHHHHHHHHHHHHh
Q 012143 437 IWANLANAYYLT-GDHRSSGKCLEKVLMV 464 (470)
Q Consensus 437 ~~~~la~~~~~~-g~~~~A~~~~~~al~~ 464 (470)
....++.++... +.+++|...|.++.+.
T Consensus 171 ~~~~l~~~~~~~~~~~~~a~~~f~~a~~~ 199 (281)
T 2c2l_A 171 IRAQQACIEAKHDKYMADMDELFSQVDEK 199 (281)
T ss_dssp HTHHHHHHHHHHHHHHHHHHHHHHHSSCT
T ss_pred hhhHHHHHHHHHHHHHHHHHHHHHhhhcc
Confidence 888888777665 7788888888887664
|
| >4f3v_A ESX-1 secretion system protein ECCA1; tetratricopeptide repeat, TPR domain, ATPase, protein secret protein transport; 2.00A {Mycobacterium tuberculosis} | Back alignment and structure |
|---|
Probab=99.73 E-value=1.8e-17 Score=140.18 Aligned_cols=201 Identities=11% Similarity=-0.000 Sum_probs=165.5
Q ss_pred CcccHHHHHHHHHHhhhcCccchHHHHHH-------HHHHHHcCChHHHHHHHHHHhhcCCCCh----------------
Q 012143 144 EPEELEEILSKLKESMQSDTRQAVVWNTL-------GLILLKSGRLQSSISVLSSLLAVDPNNC---------------- 200 (470)
Q Consensus 144 ~~~~~~~A~~~~~~~~~~~p~~~~~~~~l-------~~~~~~~~~~~~A~~~~~~a~~~~~~~~---------------- 200 (470)
..+++..|...|.+++..+|+.+++|..+ +.++...++..+++..+++.+.+.|...
T Consensus 18 ~~~d~~~A~~~F~~a~~~dP~~~Daw~g~~a~g~~~~~~L~~~~r~~~a~~~~~~~l~l~p~~l~a~~~~~g~y~~~~~~ 97 (282)
T 4f3v_A 18 LPMSEARSLDLFTEITNYDESACDAWIGRIRCGDTDRVTLFRAWYSRRNFGQLSGSVQISMSTLNARIAIGGLYGDITYP 97 (282)
T ss_dssp TTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHTTCCCHHHHHHHHHTGGGTTHHHHTTTCCGGGGCCEEECCTTTCCCEEE
T ss_pred cCCCHHHHHHHHHHHHHhChhhhHHHHhHHHccCCcHHHHHHHHHHHHHHHHHHHHhcCChhhhhhhhccCCcccccccc
Confidence 35778999999999999999999999999 8999999999999999999999877643
Q ss_pred -----HHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCChHHHHHHHHHHHhhhcccccccccchhhhhHHHhcCCHHHHH
Q 012143 201 -----DCIGNLGIAYFQSGDMEQSAKCFQDLILKDQNHPAALINYAALLLCKYGSVLAGAGANTGEGACLDQASAVNVAK 275 (470)
Q Consensus 201 -----~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~ 275 (470)
++...++.++...|++++|.+.|..++...|.+. ..+.++.++. +.+++++|+
T Consensus 98 v~~r~dl~LayA~~L~~~g~y~eA~~~l~~~~~~~p~~~-~~~~~a~l~~---------------------~~~r~~dA~ 155 (282)
T 4f3v_A 98 VTSPLAITMGFAACEAAQGNYADAMEALEAAPVAGSEHL-VAWMKAVVYG---------------------AAERWTDVI 155 (282)
T ss_dssp CSSHHHHHHHHHHHHHHHTCHHHHHHHHTSSCCTTCHHH-HHHHHHHHHH---------------------HTTCHHHHH
T ss_pred cCCHhHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCchH-HHHHHHHHHH---------------------HcCCHHHHH
Confidence 3455588999999999999999999999899888 7788877776 799999999
Q ss_pred HHHHHHHhcCCCC--HHHHHHHHHHHHHcCChhHHHHHHHHHHhcCCCcccHHHHHHHHHHHHhhhccCchHHhhhhHHH
Q 012143 276 ECLLAALKADPKA--AHIWANLANAYYLTGDHRSSGKCLEKAAKLEPNCMSTRYAVAVSRIKDAERSQEPTEQLSWAGNE 353 (470)
Q Consensus 276 ~~~~~~~~~~p~~--~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~p~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~ 353 (470)
..|+++....+.. ..+++.+|.++..+|++++|+.+|++++... ..+..
T Consensus 156 ~~l~~a~~~~d~~~~~~a~~~LG~al~~LG~~~eAl~~l~~a~~g~-~~P~~---------------------------- 206 (282)
T 4f3v_A 156 DQVKSAGKWPDKFLAGAAGVAHGVAAANLALFTEAERRLTEANDSP-AGEAC---------------------------- 206 (282)
T ss_dssp HHHTTGGGCSCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTST-TTTTT----------------------------
T ss_pred HHHHHhhccCCcccHHHHHHHHHHHHHHCCCHHHHHHHHHHHhcCC-CCccc----------------------------
Confidence 9999887753221 4589999999999999999999999998432 21110
Q ss_pred HHHHhhcCCCCCCCcHHHHHHHHHHHhccccHHHHHHHHHHHhcchhhhhHhhHHHHHHHhccHHHHHHHHHHHHhcCCC
Q 012143 354 MASILREGDPVQIEPPIAWAGFAAVQKTHHEVAAAFETEENELSKMEECAGAGESAFLDQASAVNVAKECLLAALKADPK 433 (470)
Q Consensus 354 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~p~ 433 (470)
...+++.+|.++.++|+.++|...|++++..+|+
T Consensus 207 ----------------------------------------------~~da~~~~glaL~~lGr~deA~~~l~~a~a~~P~ 240 (282)
T 4f3v_A 207 ----------------------------------------------ARAIAWYLAMARRSQGNESAAVALLEWLQTTHPE 240 (282)
T ss_dssp ----------------------------------------------HHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHSCC
T ss_pred ----------------------------------------------cHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCc
Confidence 1123444555788888889999999999999998
Q ss_pred cHHHHHHHH
Q 012143 434 AAHIWANLA 442 (470)
Q Consensus 434 ~~~~~~~la 442 (470)
+.++..|.
T Consensus 241 -~~~~~aL~ 248 (282)
T 4f3v_A 241 -PKVAAALK 248 (282)
T ss_dssp -HHHHHHHH
T ss_pred -HHHHHHHh
Confidence 77776664
|
| >3rjv_A Putative SEL1 repeat protein; alpha-alpha superhelix, structural genomics, joint center FO structural genomics, JCSG; HET: MSE; 1.65A {Klebsiella pneumoniae subsp} | Back alignment and structure |
|---|
Probab=99.73 E-value=6.2e-16 Score=128.78 Aligned_cols=150 Identities=16% Similarity=0.094 Sum_probs=128.5
Q ss_pred HHHHHHHHHhhhcCccchHHHHHHHHHHHHcCChHHHHHHHHHHhhcCCCChHHHHHHHHHHHHcC----CHHHHHHHHH
Q 012143 149 EEILSKLKESMQSDTRQAVVWNTLGLILLKSGRLQSSISVLSSLLAVDPNNCDCIGNLGIAYFQSG----DMEQSAKCFQ 224 (470)
Q Consensus 149 ~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~la~~~~~~g----~~~~A~~~~~ 224 (470)
.+|+..|+++.+. .++.+++.+|.+|...+++++|+.+|+++++. .++.+++.+|.+|.. + ++++|+.+|+
T Consensus 3 ~eA~~~~~~aa~~--g~~~a~~~lg~~~~~~~~~~~A~~~~~~a~~~--g~~~a~~~lg~~y~~-~g~~~~~~~A~~~~~ 77 (212)
T 3rjv_A 3 TEPGSQYQQQAEA--GDRRAQYYLADTWVSSGDYQKAEYWAQKAAAQ--GDGDALALLAQLKIR-NPQQADYPQARQLAE 77 (212)
T ss_dssp -CTTHHHHHHHHT--TCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHT--TCHHHHHHHHHHTTS-STTSCCHHHHHHHHH
T ss_pred chHHHHHHHHHHC--CCHHHHHHHHHHHhcCCCHHHHHHHHHHHHHc--CCHHHHHHHHHHHHc-CCCCCCHHHHHHHHH
Confidence 4678888888865 67999999999999999999999999999875 678999999999998 7 8999999999
Q ss_pred HHHhhCCCChHHHHHHHHHHHhhhcccccccccchhhhhHHHhcCCHHHHHHHHHHHHhcCC--CCHHHHHHHHHHHHH-
Q 012143 225 DLILKDQNHPAALINYAALLLCKYGSVLAGAGANTGEGACLDQASAVNVAKECLLAALKADP--KAAHIWANLANAYYL- 301 (470)
Q Consensus 225 ~~l~~~p~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~p--~~~~~~~~la~~~~~- 301 (470)
++.. +.++.+++.+|.++.... ...+++++|+.+|+++.+..| .++.++..||.+|..
T Consensus 78 ~A~~--~g~~~a~~~Lg~~y~~g~-----------------g~~~d~~~A~~~~~~A~~~~~~~~~~~a~~~Lg~~y~~g 138 (212)
T 3rjv_A 78 KAVE--AGSKSGEIVLARVLVNRQ-----------------AGATDVAHAITLLQDAARDSESDAAVDAQMLLGLIYASG 138 (212)
T ss_dssp HHHH--TTCHHHHHHHHHHHTCGG-----------------GSSCCHHHHHHHHHHHTSSTTSHHHHHHHHHHHHHHHHT
T ss_pred HHHH--CCCHHHHHHHHHHHHcCC-----------------CCccCHHHHHHHHHHHHHcCCCcchHHHHHHHHHHHHcC
Confidence 9954 678999999998886210 026899999999999999888 458999999999999
Q ss_pred ---cCChhHHHHHHHHHHhcCCCcc
Q 012143 302 ---TGDHRSSGKCLEKAAKLEPNCM 323 (470)
Q Consensus 302 ---~g~~~~A~~~~~~a~~~~p~~~ 323 (470)
.+++++|+.+|+++... |.++
T Consensus 139 ~g~~~d~~~A~~~~~~A~~~-~~~~ 162 (212)
T 3rjv_A 139 VHGPEDDVKASEYFKGSSSL-SRTG 162 (212)
T ss_dssp SSSSCCHHHHHHHHHHHHHT-SCTT
T ss_pred CCCCCCHHHHHHHHHHHHHc-CCCH
Confidence 88999999999999987 4444
|
| >4e6h_A MRNA 3'-END-processing protein RNA14; HAT domain, heat repeat, CLP1, PCF11, structural protein; 2.30A {Kluyveromyces lactis} PDB: 4e85_A 4eba_A | Back alignment and structure |
|---|
Probab=99.72 E-value=2.6e-14 Score=137.81 Aligned_cols=380 Identities=11% Similarity=0.043 Sum_probs=259.5
Q ss_pred hhhHHHHHHHHHHhCCCChhHHHHHHHHHHHhCChhHHHHHHHHHHHHHhhhhcccchhhhHHHHHHhhhccccccccCC
Q 012143 57 VSSLKTGLVHVARKMPKNAHAHFLLGLMYQRLGQPLKAVSSYEKAEEILLRCEADIARPELLSLVQIHHAQCLLPESSGD 136 (470)
Q Consensus 57 ~~~A~~~~~~~l~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 136 (470)
..+-+..|++.+..+|.+...|..+.......+.++.+...|++++...|... .+ |...+..
T Consensus 48 ~~d~i~~lE~~l~~np~d~~~W~~yi~~~~~~~~~~~aR~vyEraL~~fP~~~------~l------W~~Yi~~------ 109 (679)
T 4e6h_A 48 ESDVIGKLNDMIEEQPTDIFLYVKLLKHHVSLKQWKQVYETFDKLHDRFPLMA------NI------WCMRLSL------ 109 (679)
T ss_dssp CSCHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCH------HH------HHHHHHH------
T ss_pred CHHHHHHHHHHHHHCcCCHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHCCCCH------HH------HHHHHHH------
Confidence 45567788999999999999999999999999999999999999999987642 22 2222111
Q ss_pred CccccccCccc---HHHHHHHHHHhhhcCc--cchHHHHHHHHHHHHcCCh----HHH----HHHHHHHhh---c-CCCC
Q 012143 137 NSLDKELEPEE---LEEILSKLKESMQSDT--RQAVVWNTLGLILLKSGRL----QSS----ISVLSSLLA---V-DPNN 199 (470)
Q Consensus 137 ~~~~~~~~~~~---~~~A~~~~~~~~~~~p--~~~~~~~~l~~~~~~~~~~----~~A----~~~~~~a~~---~-~~~~ 199 (470)
..+.++ ++.+..+|++++...| .++..|..........++. +++ ...|++++. . +|.+
T Consensus 110 -----E~~~~~~~~~~~v~~lfeRal~~~~~~~sv~LW~~Yl~f~~~~~~~~~~~~~~r~~vr~~FErAl~~vG~~d~~s 184 (679)
T 4e6h_A 110 -----EFDKMEELDAAVIEPVLARCLSKELGNNDLSLWLSYITYVRKKNDIITGGEEARNIVIQAFQVVVDKCAIFEPKS 184 (679)
T ss_dssp -----HHTC--CCCHHHHHHHHHHHTCSSSCCCCHHHHHHHHHHHHHHSCSTTTHHHHHHHHHHHHHHHHHHTTTTCSSC
T ss_pred -----HHhhCCcchHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHhcccccccchhHHHHHHHHHHHHHHhCcccccc
Confidence 234455 8999999999999984 6778888877766666554 333 477888776 3 6777
Q ss_pred hHHHHHHHHHHH---------HcCCHHHHHHHHHHHHhhCCCC-hH-HHHHHHHHHHh----------------------
Q 012143 200 CDCIGNLGIAYF---------QSGDMEQSAKCFQDLILKDQNH-PA-ALINYAALLLC---------------------- 246 (470)
Q Consensus 200 ~~~~~~la~~~~---------~~g~~~~A~~~~~~~l~~~p~~-~~-~~~~l~~~~~~---------------------- 246 (470)
..+|........ .+++.+.+...|++++.+ |.. .. .|......-..
T Consensus 185 ~~iW~~Yi~f~~~~~~~~~~eeq~~~~~~R~iy~raL~i-P~~~~~~~w~~Y~~fe~~~~~~~a~~~~~e~~~~y~~Ar~ 263 (679)
T 4e6h_A 185 IQFWNEYLHFLEHWKPVNKFEEQQRVQYIRKLYKTLLCQ-PMDCLESMWQRYTQWEQDVNQLTARRHIGELSAQYMNARS 263 (679)
T ss_dssp HHHHHHHHHHHHTCCCCSHHHHHHHHHHHHHHHHHHTTS-CCSSHHHHHHHHHHHHHHHCTTTHHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHhccccCcHHHHhHHHHHHHHHHHHHhC-ccHHHHHHHHHHHHHHHhcCcchHHHHHHHhhHHHHHHHH
Confidence 777777665543 345678899999999974 432 21 11111110000
Q ss_pred ---h-------hcccccc--------------------cccchhhhhHHHhcC--------CHHHHHHHHHHHHhcCCCC
Q 012143 247 ---K-------YGSVLAG--------------------AGANTGEGACLDQAS--------AVNVAKECLLAALKADPKA 288 (470)
Q Consensus 247 ---~-------~~~~~~~--------------------~~~~~~~~~~~~~~~--------~~~~A~~~~~~~~~~~p~~ 288 (470)
. ....... ...|..... +.+.. ..+.....|++++...|.+
T Consensus 264 ~~~e~~~~~~~l~r~~p~~~~~~~~~~~p~~~~~~~~ql~lW~~yi~-fEk~~~~~l~~~~~~~Rv~~~Ye~aL~~~p~~ 342 (679)
T 4e6h_A 264 LYQDWLNITKGLKRNLPITLNQATESNLPKPNEYDVQQLLIWLEWIR-WESDNKLELSDDLHKARMTYVYMQAAQHVCFA 342 (679)
T ss_dssp HHHHHHHHTTTCCCCCCSSSTTCCTTTSCCTTCCCHHHHHHHHHHHH-HHHTCTTCCCHHHHHHHHHHHHHHHHHHTTTC
T ss_pred HHHHHHHHHHhHhhccccccccchhccCCCCchhHHHHHHHHHHHHH-HHHhCCccccchhhHHHHHHHHHHHHHHcCCC
Confidence 0 0000000 001111111 11111 1344668899999999999
Q ss_pred HHHHHHHHHHHHHcCChhHHH-HHHHHHHhcCCCcccHHHHHHHHHHHHhhhccCchHHhhhhHHHHHHHhh-------c
Q 012143 289 AHIWANLANAYYLTGDHRSSG-KCLEKAAKLEPNCMSTRYAVAVSRIKDAERSQEPTEQLSWAGNEMASILR-------E 360 (470)
Q Consensus 289 ~~~~~~la~~~~~~g~~~~A~-~~~~~a~~~~p~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-------~ 360 (470)
+.+|+..+..+...|+.++|. ..|++++...|.+...+...+.... .. ...+.....++.+...+. .
T Consensus 343 ~~lW~~ya~~~~~~~~~~~a~r~il~rAi~~~P~s~~Lwl~~a~~ee--~~---~~~e~aR~iyek~l~~l~~~~~~~~~ 417 (679)
T 4e6h_A 343 PEIWFNMANYQGEKNTDSTVITKYLKLGQQCIPNSAVLAFSLSEQYE--LN---TKIPEIETTILSCIDRIHLDLAALME 417 (679)
T ss_dssp HHHHHHHHHHHHHHSCCTTHHHHHHHHHHHHCTTCHHHHHHHHHHHH--HT---TCHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhcCcHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHH--Hh---CCHHHHHHHHHHHHHHHHHHhhhhhh
Confidence 999999999999999999997 9999999999987665554443221 11 122222333333332211 1
Q ss_pred CCCC--------CCCcHHHHHHHHHHHhccccHHHHHHHHHHHhcc-h--hhhhHhhHHHHHHHhc-cHHHHHHHHHHHH
Q 012143 361 GDPV--------QIEPPIAWAGFAAVQKTHHEVAAAFETEENELSK-M--EECAGAGESAFLDQAS-AVNVAKECLLAAL 428 (470)
Q Consensus 361 ~~~~--------~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~-~--~~~~~~~l~~~~~~~~-~~~~A~~~~~~al 428 (470)
..+. ......+|...+....+.|..+.|...|.+++.. . ....|...+.+-...+ +++.|...|+.++
T Consensus 418 ~~p~~~~~~~~~~~~~~~vWi~y~~~erR~~~l~~AR~vf~~A~~~~~~~~~~lyi~~A~lE~~~~~d~e~Ar~ife~~L 497 (679)
T 4e6h_A 418 DDPTNESAINQLKSKLTYVYCVYMNTMKRIQGLAASRKIFGKCRRLKKLVTPDIYLENAYIEYHISKDTKTACKVLELGL 497 (679)
T ss_dssp HSTTCHHHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHTGGGSCTHHHHHHHHHHHTTTSCCHHHHHHHHHHH
T ss_pred ccCcchhhhhhhccchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHhCCCHHHHHHHHHHHH
Confidence 0000 0023468999999999999999999999998765 2 2345555555555554 4899999999999
Q ss_pred hcCCCcHHHHHHHHHHHHHcCChHHHHHHHHHHHHhhc
Q 012143 429 KADPKAAHIWANLANAYYLTGDHRSSGKCLEKVLMVYC 466 (470)
Q Consensus 429 ~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~ 466 (470)
+..|+++..|...+......|+.+.|...|++++...+
T Consensus 498 k~~p~~~~~w~~y~~fe~~~~~~~~AR~lferal~~~~ 535 (679)
T 4e6h_A 498 KYFATDGEYINKYLDFLIYVNEESQVKSLFESSIDKIS 535 (679)
T ss_dssp HHHTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHTTTSS
T ss_pred HHCCCchHHHHHHHHHHHhCCCHHHHHHHHHHHHHhcC
Confidence 99999999999999999999999999999999998776
|
| >2xcb_A PCRH, regulatory protein PCRH; protein transport, bacterial toxin, type III secretion, protein binding; 1.85A {Pseudomonas aeruginosa} PDB: 2xcc_A | Back alignment and structure |
|---|
Probab=99.71 E-value=1e-16 Score=124.42 Aligned_cols=120 Identities=16% Similarity=0.145 Sum_probs=111.0
Q ss_pred HHHHHHhhcCCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCChHHHHHHHHHHHhhhcccccccccchhhhhHHH
Q 012143 187 SVLSSLLAVDPNNCDCIGNLGIAYFQSGDMEQSAKCFQDLILKDQNHPAALINYAALLLCKYGSVLAGAGANTGEGACLD 266 (470)
Q Consensus 187 ~~~~~a~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~ 266 (470)
..|++++..+|++...++.+|.++...|++++|+..|++++..+|+++.++..+|.++.
T Consensus 5 ~~l~~al~~~p~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~--------------------- 63 (142)
T 2xcb_A 5 GTLAMLRGLSEDTLEQLYALGFNQYQAGKWDDAQKIFQALCMLDHYDARYFLGLGACRQ--------------------- 63 (142)
T ss_dssp ----CCTTCCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHH---------------------
T ss_pred hhHHHHHcCCHHHHHHHHHHHHHHHHHccHHHHHHHHHHHHHhCCccHHHHHHHHHHHH---------------------
Confidence 57889999999999999999999999999999999999999999999999999998887
Q ss_pred hcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCChhHHHHHHHHHHhcCCCcccHHH
Q 012143 267 QASAVNVAKECLLAALKADPKAAHIWANLANAYYLTGDHRSSGKCLEKAAKLEPNCMSTRY 327 (470)
Q Consensus 267 ~~~~~~~A~~~~~~~~~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~p~~~~~~~ 327 (470)
..|++++|+.+|++++.++|+++.+++.+|.++...|++++|+.+|++++.++|+++....
T Consensus 64 ~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~ 124 (142)
T 2xcb_A 64 SLGLYEQALQSYSYGALMDINEPRFPFHAAECHLQLGDLDGAESGFYSARALAAAQPAHEA 124 (142)
T ss_dssp HTTCHHHHHHHHHHHHHHCTTCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTCGGGHH
T ss_pred HHhhHHHHHHHHHHHHhcCCCCcHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCcchHH
Confidence 7999999999999999999999999999999999999999999999999999998876544
|
| >1hh8_A P67PHOX, NCF-2, neutrophil cytosol factor 2; cell cycle, phagocyte oxidase factor, SH3 domain, repeat, TPR repeat cell cycle; HET: FLC; 1.8A {Homo sapiens} SCOP: a.118.8.1 PDB: 1wm5_A 1e96_B* | Back alignment and structure |
|---|
Probab=99.71 E-value=1e-15 Score=127.94 Aligned_cols=143 Identities=18% Similarity=0.224 Sum_probs=128.7
Q ss_pred hHHHHHHHHHHHHcCChHHHHHHHHHHhhcCCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCChHHHHHHHHHHH
Q 012143 166 AVVWNTLGLILLKSGRLQSSISVLSSLLAVDPNNCDCIGNLGIAYFQSGDMEQSAKCFQDLILKDQNHPAALINYAALLL 245 (470)
Q Consensus 166 ~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~l~~~~~ 245 (470)
...++.+|.++...|++++|+..|++++ +| ++.++..+|.++...|++++|+..|++++..+|.++.++..+|.++.
T Consensus 6 ~~~~~~~g~~~~~~~~~~~A~~~~~~a~--~~-~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~lg~~~~ 82 (213)
T 1hh8_A 6 AISLWNEGVLAADKKDWKGALDAFSAVQ--DP-HSRICFNIGCMYTILKNMTEAEKAFTRSINRDKHLAVAYFQRGMLYY 82 (213)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHTSS--SC-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhCCHHHHHHHHHHHc--CC-ChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCccchHHHHHHHHHHH
Confidence 4467889999999999999999999986 33 68899999999999999999999999999999999999999988887
Q ss_pred hhhcccccccccchhhhhHHHhcCCHHHHHHHHHHHHhcCCCCH----------------HHHHHHHHHHHHcCChhHHH
Q 012143 246 CKYGSVLAGAGANTGEGACLDQASAVNVAKECLLAALKADPKAA----------------HIWANLANAYYLTGDHRSSG 309 (470)
Q Consensus 246 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~p~~~----------------~~~~~la~~~~~~g~~~~A~ 309 (470)
..|++++|+..|+++++..|.+. .++..+|.++...|++++|+
T Consensus 83 ---------------------~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~ 141 (213)
T 1hh8_A 83 ---------------------QTEKYDLAIKDLKEALIQLRGNQLIDYKILGLQFKLFACEVLYNIAFMYAKKEEWKKAE 141 (213)
T ss_dssp ---------------------HTTCHHHHHHHHHHHHHTTTTCSEEECGGGTBCCEEEHHHHHHHHHHHHHHTTCHHHHH
T ss_pred ---------------------HcccHHHHHHHHHHHHHhCCCccHHHHHHhccccCccchHHHHHHHHHHHHccCHHHHH
Confidence 79999999999999999888766 99999999999999999999
Q ss_pred HHHHHHHhcCCCcccHHHHHHHH
Q 012143 310 KCLEKAAKLEPNCMSTRYAVAVS 332 (470)
Q Consensus 310 ~~~~~a~~~~p~~~~~~~~l~~~ 332 (470)
..|++++...|++.......+..
T Consensus 142 ~~~~~al~~~p~~~~~~~~~a~~ 164 (213)
T 1hh8_A 142 EQLALATSMKSEPRHSKIDKAME 164 (213)
T ss_dssp HHHHHHHTTCCSGGGGHHHHHHH
T ss_pred HHHHHHHHcCcccccchHHHHHH
Confidence 99999999999876655544443
|
| >2c2l_A CHIP, carboxy terminus of HSP70-interacting protein; chaperone, E3 ligase, ubiquitinylation, TPR, heat-shock protein complex; 3.3A {Mus musculus} SCOP: a.118.8.1 g.44.1.2 | Back alignment and structure |
|---|
Probab=99.71 E-value=2e-16 Score=137.86 Aligned_cols=137 Identities=9% Similarity=0.039 Sum_probs=100.9
Q ss_pred cCccchHHHHHHHHHHHHcCChHHHHHHHHHHhhcCCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCChHHHHHH
Q 012143 161 SDTRQAVVWNTLGLILLKSGRLQSSISVLSSLLAVDPNNCDCIGNLGIAYFQSGDMEQSAKCFQDLILKDQNHPAALINY 240 (470)
Q Consensus 161 ~~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~l 240 (470)
.+|+++.++.++|.++...|++++|+..++++++++|+++.+++.+|.++..+|++++|+..|+++++++|++...+...
T Consensus 33 ~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~p~~~~~~~~~ 112 (281)
T 2c2l_A 33 RNPLVAVYYTNRALCYLKMQQPEQALADCRRALELDGQSVKAHFFLGQCQLEMESYDEAIANLQRAYSLAKEQRLNFGDD 112 (281)
T ss_dssp HCSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHTTSCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCCCCSH
T ss_pred hCCccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCccchhhHHHH
Confidence 36677888889999999999999999999999999999999999999999999999999999999998888664322211
Q ss_pred HHHHHhhhcccccccccchhhhhHHHhcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCChhHHHHHHHHHHhcCC
Q 012143 241 AALLLCKYGSVLAGAGANTGEGACLDQASAVNVAKECLLAALKADPKAAHIWANLANAYYLTGDHRSSGKCLEKAAKLEP 320 (470)
Q Consensus 241 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~p 320 (470)
..... ...++..+........|.++.+...++.+. .|++++|++.++++++.+|
T Consensus 113 ~~~~~------------------------~~~~~~~~~~~~~~~~~~~~~i~~~l~~l~--~~~~~~A~~~~~~al~~~p 166 (281)
T 2c2l_A 113 IPSAL------------------------RIAKKKRWNSIEERRIHQESELHSYLTRLI--AAERERELEECQRNHEGHE 166 (281)
T ss_dssp HHHHH------------------------HHHHHHHHHHHHHTCCCCCCHHHHHHHHHH--HHHHHHHHTTTSGGGTTTS
T ss_pred HHHHH------------------------HHHHHHHHHHHHHHHHhhhHHHHHHHHHHH--HHHHHHHHHHHHhhhcccc
Confidence 11111 122233333344456677777777777654 6888888888888888888
Q ss_pred Ccc
Q 012143 321 NCM 323 (470)
Q Consensus 321 ~~~ 323 (470)
++.
T Consensus 167 ~~~ 169 (281)
T 2c2l_A 167 DDG 169 (281)
T ss_dssp CHH
T ss_pred chh
Confidence 754
|
| >3upv_A Heat shock protein STI1; TPR-fold, adaptor protein for HSP70 and HSP90, C-terminal PA HSP70, peptide binding protein; 1.60A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=99.70 E-value=4.5e-16 Score=118.07 Aligned_cols=118 Identities=18% Similarity=0.089 Sum_probs=98.8
Q ss_pred ccchHHHHHHHHHHHHcCChHHHHHHHHHHhhcCCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCChHHHHHHHH
Q 012143 163 TRQAVVWNTLGLILLKSGRLQSSISVLSSLLAVDPNNCDCIGNLGIAYFQSGDMEQSAKCFQDLILKDQNHPAALINYAA 242 (470)
Q Consensus 163 p~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~l~~ 242 (470)
|..+..+..+|..++..|++++|+..|+++++.+|+++.++..+|.++..+|++++|+..|+++++++|+++.++..+|.
T Consensus 1 p~~a~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~ 80 (126)
T 3upv_A 1 SMKAEEARLEGKEYFTKSDWPNAVKAYTEMIKRAPEDARGYSNRAAALAKLMSFPEAIADCNKAIEKDPNFVRAYIRKAT 80 (126)
T ss_dssp CHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHH
T ss_pred CchHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCcHHHHHHHHH
Confidence 45567788888888888888888888888888888888888888888888888888888888888888888888888887
Q ss_pred HHHhhhcccccccccchhhhhHHHhcCCHHHHHHHHHHHHhcC------CCCHHHHHHHHHHHHH
Q 012143 243 LLLCKYGSVLAGAGANTGEGACLDQASAVNVAKECLLAALKAD------PKAAHIWANLANAYYL 301 (470)
Q Consensus 243 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~------p~~~~~~~~la~~~~~ 301 (470)
++. ..|++++|+..|+++++++ |++..++..++.+...
T Consensus 81 ~~~---------------------~~~~~~~A~~~~~~al~~~p~~~~~p~~~~~~~~l~~~~~~ 124 (126)
T 3upv_A 81 AQI---------------------AVKEYASALETLDAARTKDAEVNNGSSAREIDQLYYKASQQ 124 (126)
T ss_dssp HHH---------------------HTTCHHHHHHHHHHHHHHHHHHHTTTTHHHHHHHHHHHHHH
T ss_pred HHH---------------------HHhCHHHHHHHHHHHHHhCcccCCchhHHHHHHHHHHHHHh
Confidence 776 6888888888888888888 8888888777776544
|
| >2e2e_A Formate-dependent nitrite reductase complex NRFG; TPR, cytochrome C biogenesis, O157:H7 EDL933, formate- nitrite reductase complex, lyase; 2.05A {Escherichia coli} | Back alignment and structure |
|---|
Probab=99.70 E-value=2.1e-16 Score=127.91 Aligned_cols=131 Identities=16% Similarity=0.207 Sum_probs=119.0
Q ss_pred ccCcccHHHHHHHHHHhhhcCccchHHHHHHHHHHHHcCChHHHHHHHHHHhhcCCCChHHHHHHHHH-HHHcCCH--HH
Q 012143 142 ELEPEELEEILSKLKESMQSDTRQAVVWNTLGLILLKSGRLQSSISVLSSLLAVDPNNCDCIGNLGIA-YFQSGDM--EQ 218 (470)
Q Consensus 142 ~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~la~~-~~~~g~~--~~ 218 (470)
+...|++++|+..+++++..+|.++.++..+|.++...|++++|+.+|+++++.+|+++.++..+|.+ +...|++ ++
T Consensus 20 ~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~l~~~~~~~~~~~ 99 (177)
T 2e2e_A 20 FASQQNPEAQLQALQDKIRANPQNSEQWALLGEYYLWQNDYSNSLLAYRQALQLRGENAELYAALATVLYYQASQHMTAQ 99 (177)
T ss_dssp CC-----CCCCHHHHHHHHHCCSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHCSCHHHHHHHHHHHHHHTTTCCCHH
T ss_pred hhhccCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHhcCCcchHH
Confidence 56789999999999999999999999999999999999999999999999999999999999999999 8899999 99
Q ss_pred HHHHHHHHHhhCCCChHHHHHHHHHHHhhhcccccccccchhhhhHHHhcCCHHHHHHHHHHHHhcCCCCHHHHH
Q 012143 219 SAKCFQDLILKDQNHPAALINYAALLLCKYGSVLAGAGANTGEGACLDQASAVNVAKECLLAALKADPKAAHIWA 293 (470)
Q Consensus 219 A~~~~~~~l~~~p~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~ 293 (470)
|+..+++++..+|+++.++..+|.++. ..|++++|+..|+++++.+|+++....
T Consensus 100 A~~~~~~al~~~p~~~~~~~~la~~~~---------------------~~g~~~~A~~~~~~al~~~p~~~~~~~ 153 (177)
T 2e2e_A 100 TRAMIDKALALDSNEITALMLLASDAF---------------------MQANYAQAIELWQKVMDLNSPRINRTQ 153 (177)
T ss_dssp HHHHHHHHHHHCTTCHHHHHHHHHHHH---------------------HTTCHHHHHHHHHHHHHTCCTTSCHHH
T ss_pred HHHHHHHHHHhCCCcHHHHHHHHHHHH---------------------HcccHHHHHHHHHHHHhhCCCCccHHH
Confidence 999999999999999999999988887 799999999999999999998765443
|
| >4gcn_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; HET: PGE; 1.85A {Caenorhabditis elegans} | Back alignment and structure |
|---|
Probab=99.70 E-value=3.1e-16 Score=118.77 Aligned_cols=117 Identities=13% Similarity=0.189 Sum_probs=99.2
Q ss_pred cchHHHHHHHHHHHHcCChHHHHHHHHHHhhcCCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCChHHHHHHHHH
Q 012143 164 RQAVVWNTLGLILLKSGRLQSSISVLSSLLAVDPNNCDCIGNLGIAYFQSGDMEQSAKCFQDLILKDQNHPAALINYAAL 243 (470)
Q Consensus 164 ~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~l~~~ 243 (470)
+.+.++..+|.+++..|+|++|+.+|+++++++|+++.++.++|.+|..+|++++|+..++++++++|++...+..++.+
T Consensus 6 d~A~a~~~lG~~~~~~~~~~~A~~~y~~Al~~~p~~~~~~~nlg~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~a~~ 85 (127)
T 4gcn_A 6 DAAIAEKDLGNAAYKQKDFEKAHVHYDKAIELDPSNITFYNNKAAVYFEEKKFAECVQFCEKAVEVGRETRADYKLIAKA 85 (127)
T ss_dssp HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCCHHHHHHH
T ss_pred HHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHhHHHHHHHhhhHHHHHHHHHHHHHhCcccchhhHHHHHH
Confidence 45678889999999999999999999999999999999999999999999999999999999999999887776666666
Q ss_pred HHhhhcccccccccchhhhhHHHhcCCHHHHHHHHHHHHhcCCCCHHHHHHH
Q 012143 244 LLCKYGSVLAGAGANTGEGACLDQASAVNVAKECLLAALKADPKAAHIWANL 295 (470)
Q Consensus 244 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~l 295 (470)
+.. +|.++...|++++|+++|++++...|+ +.....+
T Consensus 86 ~~~--------------lg~~~~~~~~~~~A~~~~~kal~~~~~-~~~~~~l 122 (127)
T 4gcn_A 86 MSR--------------AGNAFQKQNDLSLAVQWFHRSLSEFRD-PELVKKV 122 (127)
T ss_dssp HHH--------------HHHHHHHTTCHHHHHHHHHHHHHHSCC-HHHHHHH
T ss_pred HHH--------------HHHHHHHcCCHHHHHHHHHHHHhhCcC-HHHHHHH
Confidence 553 566777788888888888888887775 4444333
|
| >3mv2_B Coatomer subunit epsilon; vesicular membrane coat COAT protein complex I, protein TRAN; 2.90A {Saccharomyces cerevisiae} PDB: 3mv3_B | Back alignment and structure |
|---|
Probab=99.68 E-value=1.4e-14 Score=124.28 Aligned_cols=211 Identities=8% Similarity=-0.028 Sum_probs=152.2
Q ss_pred hhhhcChhhHHHHHHHHHHhCCCCh-hHHHHHHHHHHHhCChhHHHHHHHHHHHHHhhhhcccchhhhHHHHHHhhhccc
Q 012143 51 SSREEKVSSLKTGLVHVARKMPKNA-HAHFLLGLMYQRLGQPLKAVSSYEKAEEILLRCEADIARPELLSLVQIHHAQCL 129 (470)
Q Consensus 51 ~~~~~~~~~A~~~~~~~l~~~p~~~-~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~ 129 (470)
.+..|+|..++.... +..|.+. ...+.+.++|+.+|++.... .+. |.. ..... ++.
T Consensus 23 ~fy~G~yq~~i~e~~---~~~~~~~~~~~~~~~Rs~iAlg~~~~~~---------~~~-------~~~-~a~~~---la~ 79 (310)
T 3mv2_B 23 NYYTGNFVQCLQEIE---KFSKVTDNTLLFYKAKTLLALGQYQSQD---------PTS-------KLG-KVLDL---YVQ 79 (310)
T ss_dssp HHTTTCHHHHTHHHH---TSSCCCCHHHHHHHHHHHHHTTCCCCCC---------SSS-------TTH-HHHHH---HHH
T ss_pred HHHhhHHHHHHHHHH---hcCccchHHHHHHHHHHHHHcCCCccCC---------CCC-------HHH-HHHHH---HHH
Confidence 456778887777443 3455543 46677788899999987421 011 110 00011 110
Q ss_pred cccccCCCccccccCcccHHHHHHHHHHhhhcCccchHHHHHHHHHHHHcCChHHHHHHHHHHhhcCC--CChHHHHHHH
Q 012143 130 LPESSGDNSLDKELEPEELEEILSKLKESMQSDTRQAVVWNTLGLILLKSGRLQSSISVLSSLLAVDP--NNCDCIGNLG 207 (470)
Q Consensus 130 ~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~--~~~~~~~~la 207 (470)
+.. ..|+..+++.+...+....++..+|.++...|++++|+.++.+.+..+| .+.+++..++
T Consensus 80 ------------~~~----~~a~~~l~~l~~~~~~~~~~~~~la~i~~~~g~~eeAL~~l~~~i~~~~~~~~lea~~l~v 143 (310)
T 3mv2_B 80 ------------FLD----TKNIEELENLLKDKQNSPYELYLLATAQAILGDLDKSLETCVEGIDNDEAEGTTELLLLAI 143 (310)
T ss_dssp ------------HHT----TTCCHHHHHTTTTSCCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHTSSCSTTHHHHHHHHH
T ss_pred ------------Hhc----ccHHHHHHHHHhcCCCCcHHHHHHHHHHHHcCCHHHHHHHHHHHhccCCCcCcHHHHHHHH
Confidence 111 1278889988887666677778999999999999999999999999987 8899999999
Q ss_pred HHHHHcCCHHHHHHHHHHHHhhCCC----ChHHHHHHHHHHHhhhcccccccccchhhhhHHHhcCCHHHHHHHHHHHHh
Q 012143 208 IAYFQSGDMEQSAKCFQDLILKDQN----HPAALINYAALLLCKYGSVLAGAGANTGEGACLDQASAVNVAKECLLAALK 283 (470)
Q Consensus 208 ~~~~~~g~~~~A~~~~~~~l~~~p~----~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~ 283 (470)
.++..+|+.+.|.+.++++.+.+|+ +......++..+.. +....+++.+|..+|+++..
T Consensus 144 qi~L~~~r~d~A~k~l~~~~~~~~d~~~~~d~~l~~Laea~v~-----------------l~~g~~~~q~A~~~f~El~~ 206 (310)
T 3mv2_B 144 EVALLNNNVSTASTIFDNYTNAIEDTVSGDNEMILNLAESYIK-----------------FATNKETATSNFYYYEELSQ 206 (310)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHH-----------------HHHTCSTTTHHHHHHHHHHT
T ss_pred HHHHHCCCHHHHHHHHHHHHhcCccccccchHHHHHHHHHHHH-----------------HHhCCccHHHHHHHHHHHHH
Confidence 9999999999999999999999883 23344455444321 11123489999999999998
Q ss_pred cCCC--CHHHHHHHHHHHHHcCChhHHHHHHHHHHhcCC
Q 012143 284 ADPK--AAHIWANLANAYYLTGDHRSSGKCLEKAAKLEP 320 (470)
Q Consensus 284 ~~p~--~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~p 320 (470)
..|+ .+..+++ ++..+|++++|...++.+++..|
T Consensus 207 ~~p~~~~~~lLln---~~~~~g~~~eAe~~L~~l~~~~p 242 (310)
T 3mv2_B 207 TFPTWKTQLGLLN---LHLQQRNIAEAQGIVELLLSDYY 242 (310)
T ss_dssp TSCSHHHHHHHHH---HHHHHTCHHHHHHHHHHHHSHHH
T ss_pred hCCCcccHHHHHH---HHHHcCCHHHHHHHHHHHHHhcc
Confidence 8887 3334444 89999999999999998887743
|
| >1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A* | Back alignment and structure |
|---|
Probab=99.68 E-value=1.2e-16 Score=152.13 Aligned_cols=212 Identities=13% Similarity=0.103 Sum_probs=175.6
Q ss_pred hhhHHHHHHHHHHhCCCChhHHHHHHHHHHHhCChhHHHHHHHHHHHHHhhhhcccchhhhHHHHHHhhhccccccccCC
Q 012143 57 VSSLKTGLVHVARKMPKNAHAHFLLGLMYQRLGQPLKAVSSYEKAEEILLRCEADIARPELLSLVQIHHAQCLLPESSGD 136 (470)
Q Consensus 57 ~~~A~~~~~~~l~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 136 (470)
.++|...+.+++..+|++..+|+.++.++...|+..... . +
T Consensus 45 ~eeal~~~~~~l~~nP~~~taW~~R~~~l~~l~~~~~~~----~-~---------------------------------- 85 (567)
T 1dce_A 45 DESVLELTSQILGANPDFATLWNCRREVLQHLETEKSPE----E-S---------------------------------- 85 (567)
T ss_dssp SHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHTTSCHH----H-H----------------------------------
T ss_pred CHHHHHHHHHHHHHCchhHHHHHHHHHHHHhcccccchh----h-h----------------------------------
Confidence 467899999999999999999999999998876532110 0 0
Q ss_pred CccccccCcccHHHHHHHHHHhhhcCccchHHHHHHHHHHHHcC--ChHHHHHHHHHHhhcCCCChHHHHHHHHHHHHcC
Q 012143 137 NSLDKELEPEELEEILSKLKESMQSDTRQAVVWNTLGLILLKSG--RLQSSISVLSSLLAVDPNNCDCIGNLGIAYFQSG 214 (470)
Q Consensus 137 ~~~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~~--~~~~A~~~~~~a~~~~~~~~~~~~~la~~~~~~g 214 (470)
...+++++..+++++..+|++..+|..++.++...| +++++++.+.++++.+|.+..+|...+.+....|
T Consensus 86 --------~~~~~~eL~~~~~~l~~~pK~y~aW~hR~w~l~~l~~~~~~~el~~~~k~l~~d~~N~~aW~~R~~~l~~l~ 157 (567)
T 1dce_A 86 --------AALVKAELGFLESCLRVNPKSYGTWHHRCWLLSRLPEPNWARELELCARFLEADERNFHCWDYRRFVAAQAA 157 (567)
T ss_dssp --------HHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHTCSSCCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTC
T ss_pred --------hhhHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcccccHHHHHHHHHHHHhhccccccHHHHHHHHHHHcC
Confidence 011478888999999999999999999999999999 6799999999999999999999999999999999
Q ss_pred -CHHHHHHHHHHHHhhCCCChHHHHHHHHHHHhhhcccccccccchhhhhHHHhcCCHHHHHHHHHHHHhcCCCCHHHHH
Q 012143 215 -DMEQSAKCFQDLILKDQNHPAALINYAALLLCKYGSVLAGAGANTGEGACLDQASAVNVAKECLLAALKADPKAAHIWA 293 (470)
Q Consensus 215 -~~~~A~~~~~~~l~~~p~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~ 293 (470)
.++++++++.++++.+|.+..+|...+.++........+... +. ...+.++++++++.+++.++|++..+|+
T Consensus 158 ~~~~~el~~~~~~I~~~p~n~saW~~r~~ll~~l~~~~~~~~~-----~~--~~~~~~~eel~~~~~ai~~~P~~~saW~ 230 (567)
T 1dce_A 158 VAPAEELAFTDSLITRNFSNYSSWHYRSCLLPQLHPQPDSGPQ-----GR--LPENVLLKELELVQNAFFTDPNDQSAWF 230 (567)
T ss_dssp CCHHHHHHHHHTTTTTTCCCHHHHHHHHHHHHHHSCCCCSSSC-----CS--SCHHHHHHHHHHHHHHHHHCSSCSHHHH
T ss_pred CChHHHHHHHHHHHHHCCCCccHHHHHHHHHHhhccccccccc-----cc--ccHHHHHHHHHHHHHHHhhCCCCccHHH
Confidence 999999999999999999999999999998743211000000 00 0125689999999999999999999999
Q ss_pred HHHHHHHHcCChhH------------HHHHHHHHHhcCCCc
Q 012143 294 NLANAYYLTGDHRS------------SGKCLEKAAKLEPNC 322 (470)
Q Consensus 294 ~la~~~~~~g~~~~------------A~~~~~~a~~~~p~~ 322 (470)
.++.++...+++++ |+.+|.+++.++|..
T Consensus 231 y~~~ll~~~~~~~~~~~~~~~~~~~~~~~~f~~~i~~~~~~ 271 (567)
T 1dce_A 231 YHRWLLGRAEPHDVLCCVHVSREEACLSVCFSRPLTVGSRM 271 (567)
T ss_dssp HHHHHHSCCCCCSCEEEEEEETTTTEEEEEEEEEECTTBTT
T ss_pred HHHHHHhcCCCccceeeeeeccCCceEEEEeccceeccccc
Confidence 99999999998776 666678888777763
|
| >2e2e_A Formate-dependent nitrite reductase complex NRFG; TPR, cytochrome C biogenesis, O157:H7 EDL933, formate- nitrite reductase complex, lyase; 2.05A {Escherichia coli} | Back alignment and structure |
|---|
Probab=99.68 E-value=1e-15 Score=123.83 Aligned_cols=131 Identities=15% Similarity=0.185 Sum_probs=119.0
Q ss_pred HHHcCChHHHHHHHHHHhhcCCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCChHHHHHHHHH-HHhhhcccccc
Q 012143 176 LLKSGRLQSSISVLSSLLAVDPNNCDCIGNLGIAYFQSGDMEQSAKCFQDLILKDQNHPAALINYAAL-LLCKYGSVLAG 254 (470)
Q Consensus 176 ~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~l~~~-~~~~~~~~~~~ 254 (470)
+...|++++|+..+++++..+|.++.++..+|.++...|++++|+..|++++..+|.++.++..+|.+ +.
T Consensus 20 ~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~l~~--------- 90 (177)
T 2e2e_A 20 FASQQNPEAQLQALQDKIRANPQNSEQWALLGEYYLWQNDYSNSLLAYRQALQLRGENAELYAALATVLYY--------- 90 (177)
T ss_dssp CC-----CCCCHHHHHHHHHCCSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHCSCHHHHHHHHHHHHH---------
T ss_pred hhhccCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHH---------
Confidence 45678999999999999999999999999999999999999999999999999999999999999988 54
Q ss_pred cccchhhhhHHHhcCCH--HHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCChhHHHHHHHHHHhcCCCcccHHH
Q 012143 255 AGANTGEGACLDQASAV--NVAKECLLAALKADPKAAHIWANLANAYYLTGDHRSSGKCLEKAAKLEPNCMSTRY 327 (470)
Q Consensus 255 ~~~~~~~~~~~~~~~~~--~~A~~~~~~~~~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~p~~~~~~~ 327 (470)
..|++ ++|+.+|+++++.+|+++.++..+|.++...|++++|+..|++++..+|++.....
T Consensus 91 ------------~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~ 153 (177)
T 2e2e_A 91 ------------QASQHMTAQTRAMIDKALALDSNEITALMLLASDAFMQANYAQAIELWQKVMDLNSPRINRTQ 153 (177)
T ss_dssp ------------HTTTCCCHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTCCTTSCHHH
T ss_pred ------------hcCCcchHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcccHHHHHHHHHHHHhhCCCCccHHH
Confidence 68898 99999999999999999999999999999999999999999999999999876543
|
| >2fbn_A 70 kDa peptidylprolyl isomerase, putative; sulfur SAD, PFL2275C, TPR-containing domain, structural genomics; 1.63A {Plasmodium falciparum} SCOP: a.118.8.1 | Back alignment and structure |
|---|
Probab=99.68 E-value=1.7e-16 Score=130.94 Aligned_cols=153 Identities=15% Similarity=0.089 Sum_probs=128.8
Q ss_pred CcccHHHHHHHHHHhhhcCccchHHHHHHHHHHHHcCChHHHHHHHHHHhhcCCCCh----------------HHHHHHH
Q 012143 144 EPEELEEILSKLKESMQSDTRQAVVWNTLGLILLKSGRLQSSISVLSSLLAVDPNNC----------------DCIGNLG 207 (470)
Q Consensus 144 ~~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~----------------~~~~~la 207 (470)
..|+++++...+.......+..+..+..+|..++..|++++|+..|++++...|.++ .++..+|
T Consensus 16 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~la 95 (198)
T 2fbn_A 16 NLYFQGAKKSIYDYTDEEKVQSAFDIKEEGNEFFKKNEINEAIVKYKEALDFFIHTEEWDDQILLDKKKNIEISCNLNLA 95 (198)
T ss_dssp ------CCCSGGGCCHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTTTCTTCCCHHHHHHHHHHHHHHHHHHH
T ss_pred hhhhccccCchhhCCHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhcccccchhhHHHHHHHHHHHHHHHHH
Confidence 456678888888777777777888999999999999999999999999999999887 8999999
Q ss_pred HHHHHcCCHHHHHHHHHHHHhhCCCChHHHHHHHHHHHhhhcccccccccchhhhhHHHhcCCHHHHHHHHHHHHhcCCC
Q 012143 208 IAYFQSGDMEQSAKCFQDLILKDQNHPAALINYAALLLCKYGSVLAGAGANTGEGACLDQASAVNVAKECLLAALKADPK 287 (470)
Q Consensus 208 ~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~p~ 287 (470)
.++..+|++++|+..+++++..+|.+..+++.+|.++. ..|++++|+.+|+++++++|+
T Consensus 96 ~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~---------------------~~~~~~~A~~~~~~al~~~p~ 154 (198)
T 2fbn_A 96 TCYNKNKDYPKAIDHASKVLKIDKNNVKALYKLGVANM---------------------YFGFLEEAKENLYKAASLNPN 154 (198)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHH---------------------HHTCHHHHHHHHHHHHHHSTT
T ss_pred HHHHHhcCHHHHHHHHHHHHHhCcccHHHHHHHHHHHH---------------------HcccHHHHHHHHHHHHHHCCC
Confidence 99999999999999999999999999999999988887 799999999999999999999
Q ss_pred CHHHHHHHHHHHHHcCChhHHH-HHHHHHHh
Q 012143 288 AAHIWANLANAYYLTGDHRSSG-KCLEKAAK 317 (470)
Q Consensus 288 ~~~~~~~la~~~~~~g~~~~A~-~~~~~a~~ 317 (470)
+..++..++.++...++..++. ..|.+.+.
T Consensus 155 ~~~~~~~l~~~~~~~~~~~~~~~~~~~~~f~ 185 (198)
T 2fbn_A 155 NLDIRNSYELCVNKLKEARKKDKLTFGGMFD 185 (198)
T ss_dssp CHHHHHHHHHHHHHHHHHHC-----------
T ss_pred cHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 9999999999999999888887 45555544
|
| >1a17_A Serine/threonine protein phosphatase 5; hydrolase, protein-protein interactions, TPR, S helix; 2.45A {Homo sapiens} SCOP: a.118.8.1 PDB: 2bug_A | Back alignment and structure |
|---|
Probab=99.68 E-value=2.7e-15 Score=119.84 Aligned_cols=134 Identities=14% Similarity=0.075 Sum_probs=123.1
Q ss_pred chHHHHHHHHHHHHcCChHHHHHHHHHHhhcCCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCChHHHHHHHHHH
Q 012143 165 QAVVWNTLGLILLKSGRLQSSISVLSSLLAVDPNNCDCIGNLGIAYFQSGDMEQSAKCFQDLILKDQNHPAALINYAALL 244 (470)
Q Consensus 165 ~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~l~~~~ 244 (470)
.+..+..+|.++...|++++|+..|++++..+|.++.++..+|.++...|++++|+..+++++..+|.++.++..+|.++
T Consensus 12 ~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~a~~~ 91 (166)
T 1a17_A 12 RAEELKTQANDYFKAKDYENAIKFYSQAIELNPSNAIYYGNRSLAYLRTECYGYALGDATRAIELDKKYIKGYYRRAASN 91 (166)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcccHHHHHHHHHHH
Confidence 36788999999999999999999999999999999999999999999999999999999999999999999999988888
Q ss_pred HhhhcccccccccchhhhhHHHhcCCHHHHHHHHHHHHhcCCCCHHHHHHHHH--HHHHcCChhHHHHHHHHHHhcC
Q 012143 245 LCKYGSVLAGAGANTGEGACLDQASAVNVAKECLLAALKADPKAAHIWANLAN--AYYLTGDHRSSGKCLEKAAKLE 319 (470)
Q Consensus 245 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~la~--~~~~~g~~~~A~~~~~~a~~~~ 319 (470)
. ..|++++|+.+|+++++.+|++..++..++. .+...|++++|+..+.++....
T Consensus 92 ~---------------------~~~~~~~A~~~~~~a~~~~p~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~ 147 (166)
T 1a17_A 92 M---------------------ALGKFRAALRDYETVVKVKPHDKDAKMKYQECNKIVKQKAFERAIAGDEHKRSVV 147 (166)
T ss_dssp H---------------------HTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred H---------------------HhccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHHHHHcccchHHHh
Confidence 7 7999999999999999999999988855554 4888999999999999876543
|
| >2vyi_A SGTA protein; chaperone, TPR repeat, phosphoprotein, tetratricopeptide repeat protein, HOST-virus interaction; 2.4A {Homo sapiens} SCOP: k.38.1.1 | Back alignment and structure |
|---|
Probab=99.67 E-value=1.9e-15 Score=115.29 Aligned_cols=126 Identities=18% Similarity=0.150 Sum_probs=117.7
Q ss_pred hcCccchHHHHHHHHHHHHcCChHHHHHHHHHHhhcCCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCChHHHHH
Q 012143 160 QSDTRQAVVWNTLGLILLKSGRLQSSISVLSSLLAVDPNNCDCIGNLGIAYFQSGDMEQSAKCFQDLILKDQNHPAALIN 239 (470)
Q Consensus 160 ~~~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~ 239 (470)
..+|.++..+..+|.++...|++++|+..|++++..+|+++.++..+|.++...|++++|+..+++++..+|+++.++..
T Consensus 6 ~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~ 85 (131)
T 2vyi_A 6 EEDSAEAERLKTEGNEQMKVENFEAAVHFYGKAIELNPANAVYFCNRAAAYSKLGNYAGAVQDCERAICIDPAYSKAYGR 85 (131)
T ss_dssp -CHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHH
T ss_pred hcchhhhHHHHHHHHHHHHccCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHhhchHHHHHHHHHHHhcCccCHHHHHH
Confidence 34567788999999999999999999999999999999999999999999999999999999999999999999999988
Q ss_pred HHHHHHhhhcccccccccchhhhhHHHhcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCChh
Q 012143 240 YAALLLCKYGSVLAGAGANTGEGACLDQASAVNVAKECLLAALKADPKAAHIWANLANAYYLTGDHR 306 (470)
Q Consensus 240 l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~la~~~~~~g~~~ 306 (470)
+|.++. ..|++++|+.+|+++++..|+++.++..++.++...|+++
T Consensus 86 ~~~~~~---------------------~~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~~~~~ 131 (131)
T 2vyi_A 86 MGLALS---------------------SLNKHVEAVAYYKKALELDPDNETYKSNLKIAELKLREAP 131 (131)
T ss_dssp HHHHHH---------------------HTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHTTCC
T ss_pred HHHHHH---------------------HhCCHHHHHHHHHHHHhcCccchHHHHHHHHHHHHHhcCC
Confidence 888877 7999999999999999999999999999999999998863
|
| >2fo7_A Synthetic consensus TPR protein; tetratricopeptide repeat, consensus protein, superhelix, de novo protein; 2.30A {Synthetic} SCOP: k.38.1.1 PDB: 2hyz_A | Back alignment and structure |
|---|
Probab=99.67 E-value=6.8e-15 Score=112.87 Aligned_cols=115 Identities=25% Similarity=0.439 Sum_probs=83.2
Q ss_pred HHHHHHhhhcCccchHHHHHHHHHHHHcCChHHHHHHHHHHhhcCCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCC
Q 012143 152 LSKLKESMQSDTRQAVVWNTLGLILLKSGRLQSSISVLSSLLAVDPNNCDCIGNLGIAYFQSGDMEQSAKCFQDLILKDQ 231 (470)
Q Consensus 152 ~~~~~~~~~~~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p 231 (470)
+..+++++...|.++.++..+|.++...|++++|+..+++++...|.++.++..+|.++...|++++|+..+++++...|
T Consensus 21 ~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~ 100 (136)
T 2fo7_A 21 IEYYQKALELDPRSAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPRSAEAWYNLGNAYYKQGDYDEAIEYYQKALELDP 100 (136)
T ss_dssp HHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHCT
T ss_pred HHHHHHHHHcCCcchhHHHHHHHHHHHhcCHHHHHHHHHHHHHHCCCchHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCC
Confidence 33333333334555667777777777778888888888887777777777777778888788888888888888777777
Q ss_pred CChHHHHHHHHHHHhhhcccccccccchhhhhHHHhcCCHHHHHHHHHHHHhcCCC
Q 012143 232 NHPAALINYAALLLCKYGSVLAGAGANTGEGACLDQASAVNVAKECLLAALKADPK 287 (470)
Q Consensus 232 ~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~p~ 287 (470)
.+...+..++.++. ..|++++|+.++++++..+|+
T Consensus 101 ~~~~~~~~la~~~~---------------------~~~~~~~A~~~~~~~~~~~~~ 135 (136)
T 2fo7_A 101 RSAEAWYNLGNAYY---------------------KQGDYDEAIEYYQKALELDPR 135 (136)
T ss_dssp TCHHHHHHHHHHHH---------------------TTTCHHHHHHHHHHHHHHSTT
T ss_pred CChHHHHHHHHHHH---------------------HHccHHHHHHHHHHHHccCCC
Confidence 77777776666665 577788888888777777765
|
| >2lni_A Stress-induced-phosphoprotein 1; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative, chaperone; NMR {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.67 E-value=2.1e-15 Score=115.49 Aligned_cols=123 Identities=12% Similarity=0.110 Sum_probs=114.5
Q ss_pred cCccchHHHHHHHHHHHHcCChHHHHHHHHHHhhcCCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCChHHHHHH
Q 012143 161 SDTRQAVVWNTLGLILLKSGRLQSSISVLSSLLAVDPNNCDCIGNLGIAYFQSGDMEQSAKCFQDLILKDQNHPAALINY 240 (470)
Q Consensus 161 ~~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~l 240 (470)
..|.++.+++.+|.++...|++++|+..|++++..+|.+..++..+|.++...|++++|+..+++++..+|.+..++..+
T Consensus 11 ~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~l 90 (133)
T 2lni_A 11 MNPDLALMVKNKGNECFQKGDYPQAMKHYTEAIKRNPKDAKLYSNRAACYTKLLEFQLALKDCEECIQLEPTFIKGYTRK 90 (133)
T ss_dssp SSSCHHHHHHHHHHHHHHTTCSHHHHHHHHHHHTTCTTCHHHHHHHHHHHTTTTCHHHHHHHHHHHHHHCTTCHHHHHHH
T ss_pred cCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCCchHHHHHH
Confidence 35677889999999999999999999999999999999999999999999999999999999999999999999999988
Q ss_pred HHHHHhhhcccccccccchhhhhHHHhcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCC
Q 012143 241 AALLLCKYGSVLAGAGANTGEGACLDQASAVNVAKECLLAALKADPKAAHIWANLANAYYLTGD 304 (470)
Q Consensus 241 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~la~~~~~~g~ 304 (470)
|.++. ..|++++|+.+|+++++.+|.+..++..++.++..+|+
T Consensus 91 a~~~~---------------------~~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~~~ 133 (133)
T 2lni_A 91 AAALE---------------------AMKDYTKAMDVYQKALDLDSSCKEAADGYQRCMMAQYN 133 (133)
T ss_dssp HHHHH---------------------HTTCHHHHHHHHHHHHHHCGGGTHHHHHHHHHHHHHTC
T ss_pred HHHHH---------------------HHhhHHHHHHHHHHHHHhCCCchHHHHHHHHHHHHhcC
Confidence 88887 69999999999999999999999999999999988774
|
| >2qfc_A PLCR protein; TPR, HTH, transcription regulation; 2.60A {Bacillus thuringiensis serovar ISRAELE35646} | Back alignment and structure |
|---|
Probab=99.67 E-value=6.9e-15 Score=129.36 Aligned_cols=182 Identities=10% Similarity=-0.027 Sum_probs=130.2
Q ss_pred CCChHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCChHHHHHHHHHHHhhhcccccccccchhhhhHHHhcCCHHHHHH
Q 012143 197 PNNCDCIGNLGIAYFQSGDMEQSAKCFQDLILKDQNHPAALINYAALLLCKYGSVLAGAGANTGEGACLDQASAVNVAKE 276 (470)
Q Consensus 197 ~~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~ 276 (470)
|.....+...+..+...|++++|++.+++++...|............+ .+|.++...|++++|+.
T Consensus 72 ~~~~~~l~~~~~~~~~~~~y~~A~~~~~~~l~~~~~~~~~~~~~~~~~---------------~~~~~~~~~~~~~~A~~ 136 (293)
T 2qfc_A 72 IERKKQFKDQVIMLCKQKRYKEIYNKVWNELKKEEYHPEFQQFLQWQY---------------YVAAYVLKKVDYEYCIL 136 (293)
T ss_dssp HHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTCCCCHHHHHHHHHHH---------------HHHHHHHTSSCHHHHHH
T ss_pred hhHHHHHHHHHHHHHHhhhHHHHHHHHHHHhccccCChhHHHHHHHHH---------------HHHHHHhcCCCHHHHHH
Confidence 344556677788888899999999999998888776544322111111 14556667889999999
Q ss_pred HHHHHHhcCCCC------HHHHHHHHHHHHHcCChhHHHHHHHHHHhc---CCCcccHHHHHHHHHHHHhhhccCchHHh
Q 012143 277 CLLAALKADPKA------AHIWANLANAYYLTGDHRSSGKCLEKAAKL---EPNCMSTRYAVAVSRIKDAERSQEPTEQL 347 (470)
Q Consensus 277 ~~~~~~~~~p~~------~~~~~~la~~~~~~g~~~~A~~~~~~a~~~---~p~~~~~~~~l~~~~~~~~~~~~~~~~~~ 347 (470)
++++++...+.. ..++..+|.+|...|++++|+.+|++++.. .|++...
T Consensus 137 ~~~~al~~~~~~~~~~~~~~~~~~lg~~y~~~~~~~~A~~~~~kal~~~~~~~~~~~~---------------------- 194 (293)
T 2qfc_A 137 ELKKLLNQQLTGIDVYQNLYIENAIANIYAENGYLKKGIDLFEQILKQLEALHDNEEF---------------------- 194 (293)
T ss_dssp HHHHHHTTCCCSSCTTHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCHHH----------------------
T ss_pred HHHHHHHHHhcCCchHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhcCccccc----------------------
Confidence 999998765543 568899999999999999999999999954 3332100
Q ss_pred hhhHHHHHHHhhcCCCCCCCcHHHHHHHHHHHhccccHHHHHHHHHHHhcchhhhhHhhHHHHHHHhccHHHHHHHHHHH
Q 012143 348 SWAGNEMASILREGDPVQIEPPIAWAGFAAVQKTHHEVAAAFETEENELSKMEECAGAGESAFLDQASAVNVAKECLLAA 427 (470)
Q Consensus 348 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a 427 (470)
...+++++|.+|...|++++|+.+++++
T Consensus 195 ----------------------------------------------------~~~~~~nlg~~y~~~~~y~~Al~~~~ka 222 (293)
T 2qfc_A 195 ----------------------------------------------------DVKVRYNHAKALYLDSRYEESLYQVNKA 222 (293)
T ss_dssp ----------------------------------------------------HHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred ----------------------------------------------------hHHHHHhHHHHHHHHhhHHHHHHHHHHH
Confidence 0023445555666777777777777777
Q ss_pred HhcCCC------cHHHHHHHHHHHHHcCChHHH-HHHHHHHHHhhcc
Q 012143 428 LKADPK------AAHIWANLANAYYLTGDHRSS-GKCLEKVLMVYCS 467 (470)
Q Consensus 428 l~~~p~------~~~~~~~la~~~~~~g~~~~A-~~~~~~al~~~~~ 467 (470)
+++.++ .+.+++++|.+|..+|++++| ..+|++++.+...
T Consensus 223 l~~~~~~~~~~~~~~~~~~lg~~y~~~g~~~~Ai~~~~~~Al~~~~~ 269 (293)
T 2qfc_A 223 IEISCRINSMALIGQLYYQRGECLRKLEYEEAEIEDAYKKASFFFDI 269 (293)
T ss_dssp HHHHHHTTBCSSHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHH
T ss_pred HHHHHhcCcHHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHHH
Confidence 765432 267888999999999999999 7778988887754
|
| >3sz7_A HSC70 cochaperone (SGT); TPR domain, GET4, GET5, GET3, MDY2, SSA1, SSE1, chaperone regulator; 1.72A {Aspergillus fumigatus} | Back alignment and structure |
|---|
Probab=99.66 E-value=2e-15 Score=120.31 Aligned_cols=82 Identities=17% Similarity=0.167 Sum_probs=42.2
Q ss_pred cchHHHHHHHHHHHHcCChHHHHHHHHHHhhcCCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCChHHHHHHHHH
Q 012143 164 RQAVVWNTLGLILLKSGRLQSSISVLSSLLAVDPNNCDCIGNLGIAYFQSGDMEQSAKCFQDLILKDQNHPAALINYAAL 243 (470)
Q Consensus 164 ~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~l~~~ 243 (470)
.++..++.+|.++...|++++|+.+|+++++++|+++.++..+|.++..+|++++|+..|++++.++|++..+++.+|.+
T Consensus 9 ~~a~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~ 88 (164)
T 3sz7_A 9 PESDKLKSEGNAAMARKEYSKAIDLYTQALSIAPANPIYLSNRAAAYSASGQHEKAAEDAELATVVDPKYSKAWSRLGLA 88 (164)
T ss_dssp HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHH
T ss_pred hhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCcCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHH
Confidence 34445555555555555555555555555555555555555555555555555555555555555555554444444444
Q ss_pred HH
Q 012143 244 LL 245 (470)
Q Consensus 244 ~~ 245 (470)
+.
T Consensus 89 ~~ 90 (164)
T 3sz7_A 89 RF 90 (164)
T ss_dssp HH
T ss_pred HH
Confidence 43
|
| >1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A* | Back alignment and structure |
|---|
Probab=99.66 E-value=3.2e-15 Score=142.39 Aligned_cols=162 Identities=12% Similarity=0.066 Sum_probs=153.9
Q ss_pred HHHHHHHHHhhhcCccchHHHHHHHHHHHHcCC----------hHHHHHHHHHHhhcCCCChHHHHHHHHHHHHcC--CH
Q 012143 149 EEILSKLKESMQSDTRQAVVWNTLGLILLKSGR----------LQSSISVLSSLLAVDPNNCDCIGNLGIAYFQSG--DM 216 (470)
Q Consensus 149 ~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~~~----------~~~A~~~~~~a~~~~~~~~~~~~~la~~~~~~g--~~ 216 (470)
++|+..+.+++..+|++..+|..++.++...|+ +++++..++++++.+|++..+|...+.++...| ++
T Consensus 46 eeal~~~~~~l~~nP~~~taW~~R~~~l~~l~~~~~~~~~~~~~~~eL~~~~~~l~~~pK~y~aW~hR~w~l~~l~~~~~ 125 (567)
T 1dce_A 46 ESVLELTSQILGANPDFATLWNCRREVLQHLETEKSPEESAALVKAELGFLESCLRVNPKSYGTWHHRCWLLSRLPEPNW 125 (567)
T ss_dssp HHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHTTSCHHHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHTCSSCCH
T ss_pred HHHHHHHHHHHHHCchhHHHHHHHHHHHHhcccccchhhhhhhHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcccccH
Confidence 789999999999999999999999999999998 999999999999999999999999999999999 77
Q ss_pred HHHHHHHHHHHhhCCCChHHHHHHHHHHHhhhcccccccccchhhhhHHHhcC-CHHHHHHHHHHHHhcCCCCHHHHHHH
Q 012143 217 EQSAKCFQDLILKDQNHPAALINYAALLLCKYGSVLAGAGANTGEGACLDQAS-AVNVAKECLLAALKADPKAAHIWANL 295 (470)
Q Consensus 217 ~~A~~~~~~~l~~~p~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~A~~~~~~~~~~~p~~~~~~~~l 295 (470)
+++++.+.++++.+|.+..+|...+.++. ..| .++++++++.++++.+|.+..+|..+
T Consensus 126 ~~el~~~~k~l~~d~~N~~aW~~R~~~l~---------------------~l~~~~~~el~~~~~~I~~~p~n~saW~~r 184 (567)
T 1dce_A 126 ARELELCARFLEADERNFHCWDYRRFVAA---------------------QAAVAPAEELAFTDSLITRNFSNYSSWHYR 184 (567)
T ss_dssp HHHHHHHHHHHHHCTTCHHHHHHHHHHHH---------------------HTCCCHHHHHHHHHTTTTTTCCCHHHHHHH
T ss_pred HHHHHHHHHHHhhccccccHHHHHHHHHH---------------------HcCCChHHHHHHHHHHHHHCCCCccHHHHH
Confidence 99999999999999999999999998887 567 89999999999999999999999999
Q ss_pred HHHHHHc--------------CChhHHHHHHHHHHhcCCCcccHHHHHHH
Q 012143 296 ANAYYLT--------------GDHRSSGKCLEKAAKLEPNCMSTRYAVAV 331 (470)
Q Consensus 296 a~~~~~~--------------g~~~~A~~~~~~a~~~~p~~~~~~~~l~~ 331 (470)
+.++... +.++++++++.+++..+|++..+|+.+..
T Consensus 185 ~~ll~~l~~~~~~~~~~~~~~~~~~eel~~~~~ai~~~P~~~saW~y~~~ 234 (567)
T 1dce_A 185 SCLLPQLHPQPDSGPQGRLPENVLLKELELVQNAFFTDPNDQSAWFYHRW 234 (567)
T ss_dssp HHHHHHHSCCCCSSSCCSSCHHHHHHHHHHHHHHHHHCSSCSHHHHHHHH
T ss_pred HHHHHhhcccccccccccccHHHHHHHHHHHHHHHhhCCCCccHHHHHHH
Confidence 9999885 56799999999999999999999997765
|
| >3sz7_A HSC70 cochaperone (SGT); TPR domain, GET4, GET5, GET3, MDY2, SSA1, SSE1, chaperone regulator; 1.72A {Aspergillus fumigatus} | Back alignment and structure |
|---|
Probab=99.65 E-value=3.8e-15 Score=118.73 Aligned_cols=119 Identities=20% Similarity=0.195 Sum_probs=110.6
Q ss_pred CCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCChHHHHHHHHHHHhhhcccccccccchhhhhHHHhcCCHHHHH
Q 012143 196 DPNNCDCIGNLGIAYFQSGDMEQSAKCFQDLILKDQNHPAALINYAALLLCKYGSVLAGAGANTGEGACLDQASAVNVAK 275 (470)
Q Consensus 196 ~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~ 275 (470)
++.++..++.+|.++...|++++|+..|++++.++|.++.++..+|.++. ..|++++|+
T Consensus 7 ~~~~a~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~---------------------~~g~~~~A~ 65 (164)
T 3sz7_A 7 PTPESDKLKSEGNAAMARKEYSKAIDLYTQALSIAPANPIYLSNRAAAYS---------------------ASGQHEKAA 65 (164)
T ss_dssp CCHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHH---------------------HTTCHHHHH
T ss_pred hhhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCcCHHHHHHHHHHHH---------------------HccCHHHHH
Confidence 45567899999999999999999999999999999999999999998887 799999999
Q ss_pred HHHHHHHhcCCCCHHHHHHHHHHHHHcCChhHHHHHHHHHHhcCCCcccHHHHHHHHHHH
Q 012143 276 ECLLAALKADPKAAHIWANLANAYYLTGDHRSSGKCLEKAAKLEPNCMSTRYAVAVSRIK 335 (470)
Q Consensus 276 ~~~~~~~~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~p~~~~~~~~l~~~~~~ 335 (470)
.+|+++++++|+++.+++.+|.++..+|++++|+.+|+++++++|++...++..++....
T Consensus 66 ~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~l~~~~ 125 (164)
T 3sz7_A 66 EDAELATVVDPKYSKAWSRLGLARFDMADYKGAKEAYEKGIEAEGNGGSDAMKRGLETTK 125 (164)
T ss_dssp HHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHSSSCCHHHHHHHHHHH
T ss_pred HHHHHHHHhCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCchHHHHHHHHHHHH
Confidence 999999999999999999999999999999999999999999999999988777665443
|
| >3upv_A Heat shock protein STI1; TPR-fold, adaptor protein for HSP70 and HSP90, C-terminal PA HSP70, peptide binding protein; 1.60A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=99.65 E-value=3.1e-15 Score=113.42 Aligned_cols=113 Identities=17% Similarity=0.158 Sum_probs=104.2
Q ss_pred CCChHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCChHHHHHHHHHHHhhhcccccccccchhhhhHHHhcCCHHHHHH
Q 012143 197 PNNCDCIGNLGIAYFQSGDMEQSAKCFQDLILKDQNHPAALINYAALLLCKYGSVLAGAGANTGEGACLDQASAVNVAKE 276 (470)
Q Consensus 197 ~~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~ 276 (470)
|..+..+..+|..++..|++++|+..|++++..+|+++.++..+|.++. ..|++++|+.
T Consensus 1 p~~a~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~a~~~~---------------------~~~~~~~A~~ 59 (126)
T 3upv_A 1 SMKAEEARLEGKEYFTKSDWPNAVKAYTEMIKRAPEDARGYSNRAAALA---------------------KLMSFPEAIA 59 (126)
T ss_dssp CHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHH---------------------HTTCHHHHHH
T ss_pred CchHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCChHHHHHHHHHHH---------------------HhcCHHHHHH
Confidence 4456789999999999999999999999999999999999999998887 7999999999
Q ss_pred HHHHHHhcCCCCHHHHHHHHHHHHHcCChhHHHHHHHHHHhcC------CCcccHHHHHH
Q 012143 277 CLLAALKADPKAAHIWANLANAYYLTGDHRSSGKCLEKAAKLE------PNCMSTRYAVA 330 (470)
Q Consensus 277 ~~~~~~~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~------p~~~~~~~~l~ 330 (470)
.|+++++++|+++.++..+|.++...|++++|+..|+++++++ |++...+..+.
T Consensus 60 ~~~~al~~~p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~p~~~~~~~~l~ 119 (126)
T 3upv_A 60 DCNKAIEKDPNFVRAYIRKATAQIAVKEYASALETLDAARTKDAEVNNGSSAREIDQLYY 119 (126)
T ss_dssp HHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHTTTTHHHHHHHHH
T ss_pred HHHHHHHhCCCcHHHHHHHHHHHHHHhCHHHHHHHHHHHHHhCcccCCchhHHHHHHHHH
Confidence 9999999999999999999999999999999999999999999 77666555443
|
| >1kt0_A FKBP51, 51 kDa FK506-binding protein; FKBP-like ppiase, TPR repeats, isomerase; 2.70A {Homo sapiens} SCOP: a.118.8.1 d.26.1.1 d.26.1.1 PDB: 1kt1_A 3o5d_A | Back alignment and structure |
|---|
Probab=99.65 E-value=2.3e-16 Score=147.33 Aligned_cols=153 Identities=12% Similarity=0.183 Sum_probs=137.2
Q ss_pred cCcccHHHHHHHHHHhhhcCccchHHHHHHHHHHHHcCChHHHHHHHHHHhhcCCCC---------------hHHHHHHH
Q 012143 143 LEPEELEEILSKLKESMQSDTRQAVVWNTLGLILLKSGRLQSSISVLSSLLAVDPNN---------------CDCIGNLG 207 (470)
Q Consensus 143 ~~~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~---------------~~~~~~la 207 (470)
...+++++|+..++.++...|..+..+..+|.+++..|+|++|+..|+++++++|.+ ..++.++|
T Consensus 245 ~~l~~~~~A~~~~~~~~~~~~~~a~~~~~~G~~~~~~g~~~~A~~~y~~Al~~~p~~~~~~~~~~~~~~~~~~~~~~nla 324 (457)
T 1kt0_A 245 VTLKSFEKAKESWEMDTKEKLEQAAIVKEKGTVYFKGGKYMQAVIQYGKIVSWLEMEYGLSEKESKASESFLLAAFLNLA 324 (457)
T ss_dssp EEEEEEECCCCGGGSCHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHTTCCSCCHHHHHHHHHHHHHHHHHHH
T ss_pred hhhhhcccCcchhhcCHHHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHhcccccCChHHHHHHHHHHHHHHHHHH
Confidence 456778889999999999999999999999999999999999999999999999998 68999999
Q ss_pred HHHHHcCCHHHHHHHHHHHHhhCCCChHHHHHHHHHHHhhhcccccccccchhhhhHHHhcCCHHHHHHHHHHHHhcCCC
Q 012143 208 IAYFQSGDMEQSAKCFQDLILKDQNHPAALINYAALLLCKYGSVLAGAGANTGEGACLDQASAVNVAKECLLAALKADPK 287 (470)
Q Consensus 208 ~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~p~ 287 (470)
.++..+|++++|+..|++++.++|++..+++.+|.++. ..|++++|+..|+++++++|+
T Consensus 325 ~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~~g~a~~---------------------~~g~~~~A~~~~~~al~l~P~ 383 (457)
T 1kt0_A 325 MCYLKLREYTKAVECCDKALGLDSANEKGLYRRGEAQL---------------------LMNEFESAKGDFEKVLEVNPQ 383 (457)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHH---------------------HTTCHHHHHHHHHHHHTTC--
T ss_pred HHHHHhcCHHHHHHHHHHHHhcCCccHHHHHHHHHHHH---------------------HccCHHHHHHHHHHHHHhCCC
Confidence 99999999999999999999999999999999998887 799999999999999999999
Q ss_pred CHHHHHHHHHHHHHcCChhHHHH-HHHHHH
Q 012143 288 AAHIWANLANAYYLTGDHRSSGK-CLEKAA 316 (470)
Q Consensus 288 ~~~~~~~la~~~~~~g~~~~A~~-~~~~a~ 316 (470)
+..++..++.++...|++++|.. .|++++
T Consensus 384 ~~~a~~~l~~~~~~~~~~~~a~~~~~~~~f 413 (457)
T 1kt0_A 384 NKAARLQISMCQKKAKEHNERDRRIYANMF 413 (457)
T ss_dssp --CHHHHHHHHHHHHHHHHHHHHHHHHHC-
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999998875 344444
|
| >1hh8_A P67PHOX, NCF-2, neutrophil cytosol factor 2; cell cycle, phagocyte oxidase factor, SH3 domain, repeat, TPR repeat cell cycle; HET: FLC; 1.8A {Homo sapiens} SCOP: a.118.8.1 PDB: 1wm5_A 1e96_B* | Back alignment and structure |
|---|
Probab=99.64 E-value=1.8e-14 Score=120.29 Aligned_cols=141 Identities=13% Similarity=0.185 Sum_probs=121.3
Q ss_pred ccCcccHHHHHHHHHHhhhcCccchHHHHHHHHHHHHcCChHHHHHHHHHHhhcCCCChHHHHHHHHHHHHcCCHHHHHH
Q 012143 142 ELEPEELEEILSKLKESMQSDTRQAVVWNTLGLILLKSGRLQSSISVLSSLLAVDPNNCDCIGNLGIAYFQSGDMEQSAK 221 (470)
Q Consensus 142 ~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~la~~~~~~g~~~~A~~ 221 (470)
+...|++++|+..|++++ +| ++.+++.+|.++...|++++|+..|++++..+|+++.++..+|.++...|++++|+.
T Consensus 16 ~~~~~~~~~A~~~~~~a~--~~-~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~lg~~~~~~~~~~~A~~ 92 (213)
T 1hh8_A 16 AADKKDWKGALDAFSAVQ--DP-HSRICFNIGCMYTILKNMTEAEKAFTRSINRDKHLAVAYFQRGMLYYQTEKYDLAIK 92 (213)
T ss_dssp HHHTTCHHHHHHHHHTSS--SC-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHH
T ss_pred HHHhCCHHHHHHHHHHHc--CC-ChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCccchHHHHHHHHHHHHcccHHHHHH
Confidence 346688899999999996 33 678999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHhhCCCCh----------------HHHHHHHHHHHhhhcccccccccchhhhhHHHhcCCHHHHHHHHHHHHhcC
Q 012143 222 CFQDLILKDQNHP----------------AALINYAALLLCKYGSVLAGAGANTGEGACLDQASAVNVAKECLLAALKAD 285 (470)
Q Consensus 222 ~~~~~l~~~p~~~----------------~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~ 285 (470)
.|++++...|.+. .++..+|.++. ..|++++|+..|+++++..
T Consensus 93 ~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~---------------------~~g~~~~A~~~~~~al~~~ 151 (213)
T 1hh8_A 93 DLKEALIQLRGNQLIDYKILGLQFKLFACEVLYNIAFMYA---------------------KKEEWKKAEEQLALATSMK 151 (213)
T ss_dssp HHHHHHHTTTTCSEEECGGGTBCCEEEHHHHHHHHHHHHH---------------------HTTCHHHHHHHHHHHHTTC
T ss_pred HHHHHHHhCCCccHHHHHHhccccCccchHHHHHHHHHHH---------------------HccCHHHHHHHHHHHHHcC
Confidence 9999999888776 77777777766 7999999999999999999
Q ss_pred CCCHHHHHHHHHHHHHcCChhHHHHHHHHHHhc
Q 012143 286 PKAAHIWANLANAYYLTGDHRSSGKCLEKAAKL 318 (470)
Q Consensus 286 p~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~ 318 (470)
|++.. +..+.|+..+.+....
T Consensus 152 p~~~~------------~~~~~a~~~~~~~~~~ 172 (213)
T 1hh8_A 152 SEPRH------------SKIDKAMECVWKQKLY 172 (213)
T ss_dssp CSGGG------------GHHHHHHHHHHTTCCC
T ss_pred ccccc------------chHHHHHHHHHhcccc
Confidence 98632 3455566555544333
|
| >1kt0_A FKBP51, 51 kDa FK506-binding protein; FKBP-like ppiase, TPR repeats, isomerase; 2.70A {Homo sapiens} SCOP: a.118.8.1 d.26.1.1 d.26.1.1 PDB: 1kt1_A 3o5d_A | Back alignment and structure |
|---|
Probab=99.64 E-value=3e-16 Score=146.54 Aligned_cols=181 Identities=17% Similarity=0.142 Sum_probs=145.5
Q ss_pred hhHHHHHHHHHH----HHhcCCCCcchhhhcccch-----------hhhhcChhhHHHHHHHHHHhCCCChhHHHHHHHH
Q 012143 20 KCRSRISSKMDS----ALEFGVDADGDQSGLGTSS-----------SSREEKVSSLKTGLVHVARKMPKNAHAHFLLGLM 84 (470)
Q Consensus 20 ~~~~a~~~~~~~----~l~~~p~~~~~~~~~~~~~-----------~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~l~~~ 84 (470)
.++.++ ..+.+ ++.++|+. +|...|... ....+++++|+..++.++...|..+.++..+|.+
T Consensus 201 ~~e~al-~~~~~ge~~~l~i~P~~--ay~~~g~~~~~ip~~~~l~y~~~l~~~~~A~~~~~~~~~~~~~~a~~~~~~G~~ 277 (457)
T 1kt0_A 201 GIDKAL-EKMQREEQCILYLGPRY--GFGEAGKPKFGIEPNAELIYEVTLKSFEKAKESWEMDTKEKLEQAAIVKEKGTV 277 (457)
T ss_dssp HHHHHH-TTCCBTCEEEEEECGGG--TTCSSCBGGGTBCTTCCEEEEEEEEEEECCCCGGGSCHHHHHHHHHHHHHHHHH
T ss_pred HHHHHH-HhCCCCCEEEEEECccc--ccCCCCCcccCCCCCCEEEEEhhhhhcccCcchhhcCHHHHHHHHHHHHHHHHH
Confidence 556666 66666 77778864 555555430 2356788899999998888899999999999999
Q ss_pred HHHhCChhHHHHHHHHHHHHHhhhhcccchhhhHHHHHHhhhccccccccCCCccccccCcccHHHHHHHHHHhhhcCcc
Q 012143 85 YQRLGQPLKAVSSYEKAEEILLRCEADIARPELLSLVQIHHAQCLLPESSGDNSLDKELEPEELEEILSKLKESMQSDTR 164 (470)
Q Consensus 85 ~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~p~ 164 (470)
++..|++++|+..|++++++.|..... .+ +. .....+.
T Consensus 278 ~~~~g~~~~A~~~y~~Al~~~p~~~~~---------------------------------~~--~~-------~~~~~~~ 315 (457)
T 1kt0_A 278 YFKGGKYMQAVIQYGKIVSWLEMEYGL---------------------------------SE--KE-------SKASESF 315 (457)
T ss_dssp HHHTTCHHHHHHHHHHHHHHHTTCCSC---------------------------------CH--HH-------HHHHHHH
T ss_pred HHhCCCHHHHHHHHHHHHHHhcccccC---------------------------------Ch--HH-------HHHHHHH
Confidence 999999999999999999998764210 00 11 1123345
Q ss_pred chHHHHHHHHHHHHcCChHHHHHHHHHHhhcCCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCChHHHHHHHHHH
Q 012143 165 QAVVWNTLGLILLKSGRLQSSISVLSSLLAVDPNNCDCIGNLGIAYFQSGDMEQSAKCFQDLILKDQNHPAALINYAALL 244 (470)
Q Consensus 165 ~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~l~~~~ 244 (470)
...++.++|.++..+|++++|+.+|+++++++|+++.+++.+|.+|..+|++++|+..|+++++++|++..++..++.++
T Consensus 316 ~~~~~~nla~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~~g~a~~~~g~~~~A~~~~~~al~l~P~~~~a~~~l~~~~ 395 (457)
T 1kt0_A 316 LLAAFLNLAMCYLKLREYTKAVECCDKALGLDSANEKGLYRRGEAQLLMNEFESAKGDFEKVLEVNPQNKAARLQISMCQ 395 (457)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTC----CHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCCccHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHH
Confidence 57899999999999999999999999999999999999999999999999999999999999999999999999998888
Q ss_pred H
Q 012143 245 L 245 (470)
Q Consensus 245 ~ 245 (470)
.
T Consensus 396 ~ 396 (457)
T 1kt0_A 396 K 396 (457)
T ss_dssp H
T ss_pred H
Confidence 7
|
| >2qfc_A PLCR protein; TPR, HTH, transcription regulation; 2.60A {Bacillus thuringiensis serovar ISRAELE35646} | Back alignment and structure |
|---|
Probab=99.63 E-value=1.1e-14 Score=128.06 Aligned_cols=133 Identities=12% Similarity=0.060 Sum_probs=110.1
Q ss_pred HHHHHHHHHHHHcCChHHHHHHHHHHhhcCCCC------hHHHHHHHHHHHHcCCHHHHHHHHHHHH---hhCCCCh---
Q 012143 167 VVWNTLGLILLKSGRLQSSISVLSSLLAVDPNN------CDCIGNLGIAYFQSGDMEQSAKCFQDLI---LKDQNHP--- 234 (470)
Q Consensus 167 ~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~------~~~~~~la~~~~~~g~~~~A~~~~~~~l---~~~p~~~--- 234 (470)
..++.+|.++...|++++|+.++++++...+.. ..++..+|.+|...|++++|+.+|++++ +..|++.
T Consensus 116 ~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~lg~~y~~~~~~~~A~~~~~kal~~~~~~~~~~~~~ 195 (293)
T 2qfc_A 116 QWQYYVAAYVLKKVDYEYCILELKKLLNQQLTGIDVYQNLYIENAIANIYAENGYLKKGIDLFEQILKQLEALHDNEEFD 195 (293)
T ss_dssp HHHHHHHHHHHTSSCHHHHHHHHHHHHTTCCCSSCTTHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCHHHH
T ss_pred HHHHHHHHHHhcCCCHHHHHHHHHHHHHHHhcCCchHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhcCccccch
Confidence 345678999999999999999999999875543 4589999999999999999999999999 4456543
Q ss_pred -HHHHHHHHHHHhhhcccccccccchhhhhHHHhcCCHHHHHHHHHHHHhcCCC------CHHHHHHHHHHHHHcCChhH
Q 012143 235 -AALINYAALLLCKYGSVLAGAGANTGEGACLDQASAVNVAKECLLAALKADPK------AAHIWANLANAYYLTGDHRS 307 (470)
Q Consensus 235 -~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~p~------~~~~~~~la~~~~~~g~~~~ 307 (470)
.++.++|.++ ...|++++|+.++++++.+.++ ...++.++|.++..+|++++
T Consensus 196 ~~~~~nlg~~y---------------------~~~~~y~~Al~~~~kal~~~~~~~~~~~~~~~~~~lg~~y~~~g~~~~ 254 (293)
T 2qfc_A 196 VKVRYNHAKAL---------------------YLDSRYEESLYQVNKAIEISCRINSMALIGQLYYQRGECLRKLEYEEA 254 (293)
T ss_dssp HHHHHHHHHHH---------------------HHTTCHHHHHHHHHHHHHHHHHTTBCSSHHHHHHHHHHHHHHTTCCHH
T ss_pred HHHHHhHHHHH---------------------HHHhhHHHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHHcCCcHH
Confidence 3445555544 4899999999999999987543 27889999999999999999
Q ss_pred H-HHHHHHHHhcCC
Q 012143 308 S-GKCLEKAAKLEP 320 (470)
Q Consensus 308 A-~~~~~~a~~~~p 320 (470)
| ..+|++++.+..
T Consensus 255 Ai~~~~~~Al~~~~ 268 (293)
T 2qfc_A 255 EIEDAYKKASFFFD 268 (293)
T ss_dssp HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHH
Confidence 9 888999987653
|
| >1na0_A Designed protein CTPR3; de novo protein; HET: IPT; 1.60A {Unidentified} SCOP: k.38.1.1 PDB: 2wqh_A 3kd7_A | Back alignment and structure |
|---|
Probab=99.62 E-value=2.7e-14 Score=107.78 Aligned_cols=121 Identities=31% Similarity=0.445 Sum_probs=105.3
Q ss_pred Cccc-hHHHHHHHHHHHHcCChHHHHHHHHHHhhcCCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCChHHHHHH
Q 012143 162 DTRQ-AVVWNTLGLILLKSGRLQSSISVLSSLLAVDPNNCDCIGNLGIAYFQSGDMEQSAKCFQDLILKDQNHPAALINY 240 (470)
Q Consensus 162 ~p~~-~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~l 240 (470)
+|.. +.+++.+|.++...|++++|+..|++++...|.++.++..+|.++...|++++|+..+++++...|.++..+..+
T Consensus 4 ~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l 83 (125)
T 1na0_A 4 DPGNSAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPNNAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPNNAEAWYNL 83 (125)
T ss_dssp ---CHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHH
T ss_pred CccccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCcCcHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCccHHHHHHH
Confidence 4444 678889999999999999999999999999999999999999999999999999999999999999988888888
Q ss_pred HHHHHhhhcccccccccchhhhhHHHhcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcC
Q 012143 241 AALLLCKYGSVLAGAGANTGEGACLDQASAVNVAKECLLAALKADPKAAHIWANLANAYYLTG 303 (470)
Q Consensus 241 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~la~~~~~~g 303 (470)
+.++. ..|++++|+.++++++..+|+++.++..++.++...|
T Consensus 84 a~~~~---------------------~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g 125 (125)
T 1na0_A 84 GNAYY---------------------KQGDYDEAIEYYQKALELDPNNAEAKQNLGNAKQKQG 125 (125)
T ss_dssp HHHHH---------------------HTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHC
T ss_pred HHHHH---------------------HhcCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHhcc
Confidence 87776 6889999999999999999999999999998887654
|
| >3u3w_A Transcriptional activator PLCR protein; ternary complex, PLCR-PAPR7-DNA, HTH DNA-binding domain, QUO sensing; 2.40A {Bacillus thuringiensis} PDB: 2qfc_A | Back alignment and structure |
|---|
Probab=99.62 E-value=2.9e-14 Score=125.40 Aligned_cols=180 Identities=10% Similarity=0.000 Sum_probs=132.0
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCChHHHHHHHHHHHhhhcccccccccchhhhhHHHhcCCHHHHHHHHHHH
Q 012143 202 CIGNLGIAYFQSGDMEQSAKCFQDLILKDQNHPAALINYAALLLCKYGSVLAGAGANTGEGACLDQASAVNVAKECLLAA 281 (470)
Q Consensus 202 ~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~ 281 (470)
.+...+..+...|++++|+..+++++...+..+.... ....+. .+|.++...+++++|+.+|+++
T Consensus 77 ~l~~~i~~~~~~~~y~~a~~~~~~~l~~~~~~~~~~~-~~~~~~--------------~l~~~~~~~~~~~~Ai~~~~~a 141 (293)
T 3u3w_A 77 QFKDQVIMLCKQKRYKEIYNKVWNELKKEEYHPEFQQ-FLQWQY--------------YVAAYVLKKVDYEYCILELKKL 141 (293)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHTTCCCCHHHHH-HHHHHH--------------HHHHHHTTSSCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhhHHHHHHHHHHHhccccCChHHHH-HHHHHH--------------HHHHHHHcccCHHHHHHHHHHH
Confidence 3445577788899999999999999987776665421 111111 1355556788999999999999
Q ss_pred HhcCCCC------HHHHHHHHHHHHHcCChhHHHHHHHHHHhcCCCcccHHHHHHHHHHHHhhhccCchHHhhhhHHHHH
Q 012143 282 LKADPKA------AHIWANLANAYYLTGDHRSSGKCLEKAAKLEPNCMSTRYAVAVSRIKDAERSQEPTEQLSWAGNEMA 355 (470)
Q Consensus 282 ~~~~p~~------~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~p~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~ 355 (470)
+...+.. ..++.++|.+|...|++++|+.+|+++++.....+...
T Consensus 142 l~~~~~~~~~~~~~~~~~~lg~~y~~~g~~~~A~~~~~~al~~~~~~~~~~----------------------------- 192 (293)
T 3u3w_A 142 LNQQLTGIDVYQNLYIENAIANIYAENGYLKKGIDLFEQILKQLEALHDNE----------------------------- 192 (293)
T ss_dssp HHTCCCCSCTTHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSSCCH-----------------------------
T ss_pred HHHhcccccHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhcccch-----------------------------
Confidence 9865442 34799999999999999999999999986432210000
Q ss_pred HHhhcCCCCCCCcHHHHHHHHHHHhccccHHHHHHHHHHHhcchhhhhHhhHHHHHHHhccHHHHHHHHHHHHhcCCCc-
Q 012143 356 SILREGDPVQIEPPIAWAGFAAVQKTHHEVAAAFETEENELSKMEECAGAGESAFLDQASAVNVAKECLLAALKADPKA- 434 (470)
Q Consensus 356 ~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~p~~- 434 (470)
+....+++++|.+|...|++++|+.++++++++.+..
T Consensus 193 ------------------------------------------~~~~~~~~nlg~~y~~~~~y~~A~~~~~~al~~~~~~~ 230 (293)
T 3u3w_A 193 ------------------------------------------EFDVKVRYNHAKALYLDSRYEESLYQVNKAIEISCRIN 230 (293)
T ss_dssp ------------------------------------------HHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTT
T ss_pred ------------------------------------------hHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHcC
Confidence 0112345566667777788888888888888765433
Q ss_pred -----HHHHHHHHHHHHHcCC-hHHHHHHHHHHHHhhcc
Q 012143 435 -----AHIWANLANAYYLTGD-HRSSGKCLEKVLMVYCS 467 (470)
Q Consensus 435 -----~~~~~~la~~~~~~g~-~~~A~~~~~~al~~~~~ 467 (470)
+.+++.+|.+|..+|+ +++|+.+|++|+++...
T Consensus 231 ~~~~~~~~~~~lg~~~~~~g~~~~~A~~~~~~Al~i~~~ 269 (293)
T 3u3w_A 231 SMALIGQLYYQRGECLRKLEYEEAEIEDAYKKASFFFDI 269 (293)
T ss_dssp BCTTHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHHHHHhCCcHHHHHHHHHHHHHHHHH
Confidence 7899999999999995 69999999999998754
|
| >3q49_B STIP1 homology and U box-containing protein 1; E3 ubiquitin ligase, ligase-chaperone complex; 1.54A {Mus musculus} PDB: 3q47_B 3q4a_B* | Back alignment and structure |
|---|
Probab=99.62 E-value=7.5e-15 Score=113.13 Aligned_cols=118 Identities=14% Similarity=0.072 Sum_probs=79.0
Q ss_pred CccchHHHHHHHHHHHHcCChHHHHHHHHHHhhcCCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCChHHHHHHH
Q 012143 162 DTRQAVVWNTLGLILLKSGRLQSSISVLSSLLAVDPNNCDCIGNLGIAYFQSGDMEQSAKCFQDLILKDQNHPAALINYA 241 (470)
Q Consensus 162 ~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~l~ 241 (470)
+|.++..++.+|.++...|++++|+..|++++..+|+++.++..+|.++..+|++++|+..+++++.++|+++.++..+|
T Consensus 5 ~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~ 84 (137)
T 3q49_B 5 KSPSAQELKEQGNRLFVGRKYPEAAACYGRAITRNPLVAVYYTNRALCYLKMQQPEQALADCRRALELDGQSVKAHFFLG 84 (137)
T ss_dssp -CCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHH
T ss_pred ccccHHHHHHHHHHHHHhCcHHHHHHHHHHHHhhCcCcHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCchhHHHHHHHH
Confidence 45566667777777777777777777777777777777777777777777777777777777777777777666666666
Q ss_pred HHHHhhhcccccccccchhhhhHHHhcCCHHHHHHHHHHHHhcCCC-----CHHHHHHHHHHHH
Q 012143 242 ALLLCKYGSVLAGAGANTGEGACLDQASAVNVAKECLLAALKADPK-----AAHIWANLANAYY 300 (470)
Q Consensus 242 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~p~-----~~~~~~~la~~~~ 300 (470)
.++. ..|++++|+..|++++...|+ +..+...+..+..
T Consensus 85 ~~~~---------------------~~~~~~~A~~~~~~a~~~~p~~~~~~~~~~~~~l~~~~~ 127 (137)
T 3q49_B 85 QCQL---------------------EMESYDEAIANLQRAYSLAKEQRLNFGDDIPSALRIAKK 127 (137)
T ss_dssp HHHH---------------------HTTCHHHHHHHHHHHHHHHHHTTCCCTTHHHHHHHHHHH
T ss_pred HHHH---------------------HHhhHHHHHHHHHHHHHHChhHHHHHHHHHHHHHHHHHH
Confidence 6665 566677777777777666665 4555555554443
|
| >3u3w_A Transcriptional activator PLCR protein; ternary complex, PLCR-PAPR7-DNA, HTH DNA-binding domain, QUO sensing; 2.40A {Bacillus thuringiensis} PDB: 2qfc_A | Back alignment and structure |
|---|
Probab=99.62 E-value=6e-15 Score=129.76 Aligned_cols=157 Identities=11% Similarity=0.084 Sum_probs=127.8
Q ss_pred ccCcccHHHHHHHHHHhhhcCccchH------HHHHHHHHHHHcCChHHHHHHHHHHhhcCCCCh------HHHHHHHHH
Q 012143 142 ELEPEELEEILSKLKESMQSDTRQAV------VWNTLGLILLKSGRLQSSISVLSSLLAVDPNNC------DCIGNLGIA 209 (470)
Q Consensus 142 ~~~~~~~~~A~~~~~~~~~~~p~~~~------~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~------~~~~~la~~ 209 (470)
++..|++++|+..+++++...+..+. .+..+|.++...|++++|+.+|++++...+... .++..+|.+
T Consensus 85 ~~~~~~y~~a~~~~~~~l~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~Ai~~~~~al~~~~~~~~~~~~~~~~~~lg~~ 164 (293)
T 3u3w_A 85 LCKQKRYKEIYNKVWNELKKEEYHPEFQQFLQWQYYVAAYVLKKVDYEYCILELKKLLNQQLTGIDVYQNLYIENAIANI 164 (293)
T ss_dssp HHHTTCHHHHHHHHHHHHTTCCCCHHHHHHHHHHHHHHHHHTTSSCHHHHHHHHHHHHHTCCCCSCTTHHHHHHHHHHHH
T ss_pred HHHHhhHHHHHHHHHHHhccccCChHHHHHHHHHHHHHHHHHcccCHHHHHHHHHHHHHHhcccccHHHHHHHHHHHHHH
Confidence 35678899999999999987776554 334589999999999999999999999654432 379999999
Q ss_pred HHHcCCHHHHHHHHHHHHhhCC---CC----hHHHHHHHHHHHhhhcccccccccchhhhhHHHhcCCHHHHHHHHHHHH
Q 012143 210 YFQSGDMEQSAKCFQDLILKDQ---NH----PAALINYAALLLCKYGSVLAGAGANTGEGACLDQASAVNVAKECLLAAL 282 (470)
Q Consensus 210 ~~~~g~~~~A~~~~~~~l~~~p---~~----~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~ 282 (470)
|..+|++++|+.+|++++.... .+ ..++.++ |.++...|++++|+.++++++
T Consensus 165 y~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~nl---------------------g~~y~~~~~y~~A~~~~~~al 223 (293)
T 3u3w_A 165 YAENGYLKKGIDLFEQILKQLEALHDNEEFDVKVRYNH---------------------AKALYLDSRYEESLYQVNKAI 223 (293)
T ss_dssp HHHTTCHHHHHHHHHHHHHHHHHSSCCHHHHHHHHHHH---------------------HHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHcCCHHHHHHHHHHHHHHHHhcccchhHHHHHHHHH---------------------HHHHHHHhHHHHHHHHHHHHH
Confidence 9999999999999999995422 22 2233444 455558999999999999999
Q ss_pred hcCCCC------HHHHHHHHHHHHHcCC-hhHHHHHHHHHHhcC
Q 012143 283 KADPKA------AHIWANLANAYYLTGD-HRSSGKCLEKAAKLE 319 (470)
Q Consensus 283 ~~~p~~------~~~~~~la~~~~~~g~-~~~A~~~~~~a~~~~ 319 (470)
++.+.. +.++..+|.++..+|+ +++|+.+|++++.+.
T Consensus 224 ~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~~A~~~~~~Al~i~ 267 (293)
T 3u3w_A 224 EISCRINSMALIGQLYYQRGECLRKLEYEEAEIEDAYKKASFFF 267 (293)
T ss_dssp HHHHHTTBCTTHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHH
T ss_pred HHHHHcCcHHHHHHHHHHHHHHHHHhCCcHHHHHHHHHHHHHHH
Confidence 876443 7899999999999995 699999999999764
|
| >1a17_A Serine/threonine protein phosphatase 5; hydrolase, protein-protein interactions, TPR, S helix; 2.45A {Homo sapiens} SCOP: a.118.8.1 PDB: 2bug_A | Back alignment and structure |
|---|
Probab=99.61 E-value=1.9e-14 Score=114.93 Aligned_cols=131 Identities=14% Similarity=-0.009 Sum_probs=112.5
Q ss_pred hhhhHHHhcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCChhHHHHHHHHHHhcCCCcccHHHHHHHHHHHHhhh
Q 012143 260 GEGACLDQASAVNVAKECLLAALKADPKAAHIWANLANAYYLTGDHRSSGKCLEKAAKLEPNCMSTRYAVAVSRIKDAER 339 (470)
Q Consensus 260 ~~~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~p~~~~~~~~l~~~~~~~~~~ 339 (470)
.+|.++...|++++|+..|++++..+|.++.++..+|.++...|++++|+.++++++..+|++..++
T Consensus 18 ~~a~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~------------- 84 (166)
T 1a17_A 18 TQANDYFKAKDYENAIKFYSQAIELNPSNAIYYGNRSLAYLRTECYGYALGDATRAIELDKKYIKGY------------- 84 (166)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHH-------------
T ss_pred HHHHHHHHccCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcccHHHH-------------
Confidence 3456666899999999999999999999999999999999999999999999999999998854322
Q ss_pred ccCchHHhhhhHHHHHHHhhcCCCCCCCcHHHHHHHHHHHhccccHHHHHHHHHHHhcchhhhhHhhHHHHHHHhccHHH
Q 012143 340 SQEPTEQLSWAGNEMASILREGDPVQIEPPIAWAGFAAVQKTHHEVAAAFETEENELSKMEECAGAGESAFLDQASAVNV 419 (470)
Q Consensus 340 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~ 419 (470)
+.+|.++...|++++
T Consensus 85 -----------------------------------------------------------------~~~a~~~~~~~~~~~ 99 (166)
T 1a17_A 85 -----------------------------------------------------------------YRRAASNMALGKFRA 99 (166)
T ss_dssp -----------------------------------------------------------------HHHHHHHHHTTCHHH
T ss_pred -----------------------------------------------------------------HHHHHHHHHhccHHH
Confidence 334447778888999
Q ss_pred HHHHHHHHHhcCCCcHHHHHHHHHH--HHHcCChHHHHHHHHHHHHhhccC
Q 012143 420 AKECLLAALKADPKAAHIWANLANA--YYLTGDHRSSGKCLEKVLMVYCSS 468 (470)
Q Consensus 420 A~~~~~~al~~~p~~~~~~~~la~~--~~~~g~~~~A~~~~~~al~~~~~~ 468 (470)
|+.+|+++++.+|+++.++..++.+ +...|++++|+..++++.+++++.
T Consensus 100 A~~~~~~a~~~~p~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~ 150 (166)
T 1a17_A 100 ALRDYETVVKVKPHDKDAKMKYQECNKIVKQKAFERAIAGDEHKRSVVDSL 150 (166)
T ss_dssp HHHHHHHHHHHSTTCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHHHHHcccchHHHhccc
Confidence 9999999999999999888555555 888999999999999999887654
|
| >2hr2_A Hypothetical protein; alpha-alpha superhelix fold, structural genomics, joint CENT structural genomics, JCSG, protein structure initiative; 2.54A {Chlorobium tepidum} SCOP: a.118.8.8 | Back alignment and structure |
|---|
Probab=99.61 E-value=2e-15 Score=115.41 Aligned_cols=112 Identities=9% Similarity=-0.013 Sum_probs=100.5
Q ss_pred hHHHHHHHHHHHHcCChHHHHHHHHHHhhcCCC-------ChH-----HHHHHHHHHHHcCCHHHHHHHHHHHHhh----
Q 012143 166 AVVWNTLGLILLKSGRLQSSISVLSSLLAVDPN-------NCD-----CIGNLGIAYFQSGDMEQSAKCFQDLILK---- 229 (470)
Q Consensus 166 ~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~-------~~~-----~~~~la~~~~~~g~~~~A~~~~~~~l~~---- 229 (470)
...+..+|..++..|+|++|+..|+++++++|+ +.. +|.++|.++..+|++++|+..|++++++
T Consensus 11 a~~~~~~G~~l~~~g~~eeAi~~Y~kAL~l~p~~~~~~a~~~~~~~a~a~~n~g~al~~Lgr~~eAl~~~~kAL~l~n~~ 90 (159)
T 2hr2_A 11 AYLALSDAQRQLVAGEYDEAAANCRRAMEISHTMPPEEAFDHAGFDAFCHAGLAEALAGLRSFDEALHSADKALHYFNRR 90 (159)
T ss_dssp HHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHTTSCTTSCCCHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHhhCCCCcchhhhhhccchHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhhhcc
Confidence 567889999999999999999999999999999 443 9999999999999999999999999999
Q ss_pred ---CCCChHHH----HHHHHHHHhhhcccccccccchhhhhHHHhcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHH
Q 012143 230 ---DQNHPAAL----INYAALLLCKYGSVLAGAGANTGEGACLDQASAVNVAKECLLAALKADPKAAHIWANLANA 298 (470)
Q Consensus 230 ---~p~~~~~~----~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~la~~ 298 (470)
+|++..+| +++|.++. ..|++++|+..|+++++++|++..+...+..+
T Consensus 91 ~e~~pd~~~A~~~~~~~rG~aL~---------------------~lgr~eEAl~~y~kAlel~p~d~~~~~~~~~~ 145 (159)
T 2hr2_A 91 GELNQDEGKLWISAVYSRALALD---------------------GLGRGAEAMPEFKKVVEMIEERKGETPGKERM 145 (159)
T ss_dssp CCTTSTHHHHHHHHHHHHHHHHH---------------------HTTCHHHHHHHHHHHHHHHHHCCSCCTTHHHH
T ss_pred ccCCCchHHHHHHHHHhHHHHHH---------------------HCCCHHHHHHHHHHHHhcCCCcHHHHHHHHHH
Confidence 99999999 99888887 79999999999999999999876555444433
|
| >1hxi_A PEX5, peroxisome targeting signal 1 receptor PEX5; alpha helical, transport protein; 1.60A {Trypanosoma brucei} SCOP: a.118.8.1 | Back alignment and structure |
|---|
Probab=99.60 E-value=8.2e-15 Score=109.73 Aligned_cols=103 Identities=17% Similarity=0.131 Sum_probs=90.4
Q ss_pred HHHHHHHHHHHHcCChHHHHHHHHHHhhcCCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCChHHHHHHHHHHHh
Q 012143 167 VVWNTLGLILLKSGRLQSSISVLSSLLAVDPNNCDCIGNLGIAYFQSGDMEQSAKCFQDLILKDQNHPAALINYAALLLC 246 (470)
Q Consensus 167 ~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~l~~~~~~ 246 (470)
..++.+|..+...|++++|+..|+++++.+|+++.+++.+|.++...|++++|+..|+++++++|+++.++..+|.++.
T Consensus 18 ~~~~~~g~~~~~~g~~~~A~~~~~~al~~~P~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~P~~~~~~~~la~~~~- 96 (121)
T 1hxi_A 18 ENPMEEGLSMLKLANLAEAALAFEAVCQKEPEREEAWRSLGLTQAENEKDGLAIIALNHARMLDPKDIAVHAALAVSHT- 96 (121)
T ss_dssp SCHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHH-
T ss_pred hhHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHH-
Confidence 4578899999999999999999999999999999999999999999999999999999999999999999999988887
Q ss_pred hhcccccccccchhhhhHHHhcCCHHHHHHHHHHHHhcCCCCHH
Q 012143 247 KYGSVLAGAGANTGEGACLDQASAVNVAKECLLAALKADPKAAH 290 (470)
Q Consensus 247 ~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~p~~~~ 290 (470)
..|++++|+..|+++++.+|++..
T Consensus 97 --------------------~~g~~~~A~~~~~~al~~~P~~~~ 120 (121)
T 1hxi_A 97 --------------------NEHNANAALASLRAWLLSQPQYEQ 120 (121)
T ss_dssp --------------------HHHHHHHHHHHHHHHHC-------
T ss_pred --------------------HcCCHHHHHHHHHHHHHhCcCCCC
Confidence 689999999999999999987643
|
| >2hr2_A Hypothetical protein; alpha-alpha superhelix fold, structural genomics, joint CENT structural genomics, JCSG, protein structure initiative; 2.54A {Chlorobium tepidum} SCOP: a.118.8.8 | Back alignment and structure |
|---|
Probab=99.60 E-value=7.5e-15 Score=112.21 Aligned_cols=107 Identities=12% Similarity=0.044 Sum_probs=95.5
Q ss_pred hHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCC-------ChH-----HHHHHHHHHHhhhcccccccccchhhhhHHHh
Q 012143 200 CDCIGNLGIAYFQSGDMEQSAKCFQDLILKDQN-------HPA-----ALINYAALLLCKYGSVLAGAGANTGEGACLDQ 267 (470)
Q Consensus 200 ~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~-------~~~-----~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~ 267 (470)
...+...|..++..|++++|+..|+++++++|+ +.. +|.++|.++. .
T Consensus 11 a~~~~~~G~~l~~~g~~eeAi~~Y~kAL~l~p~~~~~~a~~~~~~~a~a~~n~g~al~---------------------~ 69 (159)
T 2hr2_A 11 AYLALSDAQRQLVAGEYDEAAANCRRAMEISHTMPPEEAFDHAGFDAFCHAGLAEALA---------------------G 69 (159)
T ss_dssp HHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHTTSCTTSCCCHHHHHHHHHHHHHHHHH---------------------H
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHhhCCCCcchhhhhhccchHHHHHHHHHHHH---------------------H
Confidence 467899999999999999999999999999999 333 5556555555 8
Q ss_pred cCCHHHHHHHHHHHHhc-------CCCCHHHH----HHHHHHHHHcCChhHHHHHHHHHHhcCCCcccHHH
Q 012143 268 ASAVNVAKECLLAALKA-------DPKAAHIW----ANLANAYYLTGDHRSSGKCLEKAAKLEPNCMSTRY 327 (470)
Q Consensus 268 ~~~~~~A~~~~~~~~~~-------~p~~~~~~----~~la~~~~~~g~~~~A~~~~~~a~~~~p~~~~~~~ 327 (470)
.|++++|+.+|++++++ +|+++.+| +++|.++..+|++++|+..|+++++++|++.....
T Consensus 70 Lgr~~eAl~~~~kAL~l~n~~~e~~pd~~~A~~~~~~~rG~aL~~lgr~eEAl~~y~kAlel~p~d~~~~~ 140 (159)
T 2hr2_A 70 LRSFDEALHSADKALHYFNRRGELNQDEGKLWISAVYSRALALDGLGRGAEAMPEFKKVVEMIEERKGETP 140 (159)
T ss_dssp TTCHHHHHHHHHHHHHHHHHHCCTTSTHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHCCSCCT
T ss_pred CCCHHHHHHHHHHHHHhhhccccCCCchHHHHHHHHHhHHHHHHHCCCHHHHHHHHHHHHhcCCCcHHHHH
Confidence 99999999999999999 99999999 99999999999999999999999999999875433
|
| >1hxi_A PEX5, peroxisome targeting signal 1 receptor PEX5; alpha helical, transport protein; 1.60A {Trypanosoma brucei} SCOP: a.118.8.1 | Back alignment and structure |
|---|
Probab=99.60 E-value=1.1e-14 Score=108.97 Aligned_cols=102 Identities=16% Similarity=0.120 Sum_probs=92.8
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCChHHHHHHHHHHHhhhcccccccccchhhhhHHHhcCCHHHHHHHHHH
Q 012143 201 DCIGNLGIAYFQSGDMEQSAKCFQDLILKDQNHPAALINYAALLLCKYGSVLAGAGANTGEGACLDQASAVNVAKECLLA 280 (470)
Q Consensus 201 ~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~ 280 (470)
..++.+|.++...|++++|+..|+++++.+|+++.++..+|.++. ..|++++|+..|++
T Consensus 18 ~~~~~~g~~~~~~g~~~~A~~~~~~al~~~P~~~~a~~~lg~~~~---------------------~~g~~~~A~~~~~~ 76 (121)
T 1hxi_A 18 ENPMEEGLSMLKLANLAEAALAFEAVCQKEPEREEAWRSLGLTQA---------------------ENEKDGLAIIALNH 76 (121)
T ss_dssp SCHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHH---------------------HTTCHHHHHHHHHH
T ss_pred hhHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHH---------------------HcCCHHHHHHHHHH
Confidence 357899999999999999999999999999999999999999888 79999999999999
Q ss_pred HHhcCCCCHHHHHHHHHHHHHcCChhHHHHHHHHHHhcCCCcc
Q 012143 281 ALKADPKAAHIWANLANAYYLTGDHRSSGKCLEKAAKLEPNCM 323 (470)
Q Consensus 281 ~~~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~p~~~ 323 (470)
+++++|+++.++..+|.++...|++++|+..|+++++.+|++.
T Consensus 77 al~l~P~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~P~~~ 119 (121)
T 1hxi_A 77 ARMLDPKDIAVHAALAVSHTNEHNANAALASLRAWLLSQPQYE 119 (121)
T ss_dssp HHHHCTTCHHHHHHHHHHHHHHHHHHHHHHHHHHHHC------
T ss_pred HHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcCCC
Confidence 9999999999999999999999999999999999999999864
|
| >4gcn_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; HET: PGE; 1.85A {Caenorhabditis elegans} | Back alignment and structure |
|---|
Probab=99.60 E-value=6.8e-15 Score=111.30 Aligned_cols=102 Identities=15% Similarity=0.136 Sum_probs=94.6
Q ss_pred ChHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCChHHHHHHHHHHHhhhcccccccccchhhhhHHHhcCCHHHHHHHH
Q 012143 199 NCDCIGNLGIAYFQSGDMEQSAKCFQDLILKDQNHPAALINYAALLLCKYGSVLAGAGANTGEGACLDQASAVNVAKECL 278 (470)
Q Consensus 199 ~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~ 278 (470)
...++..+|.+++..|++++|+..|+++++++|+++.++.++|.++. ..|++++|+..|
T Consensus 7 ~A~a~~~lG~~~~~~~~~~~A~~~y~~Al~~~p~~~~~~~nlg~~~~---------------------~~~~~~~A~~~~ 65 (127)
T 4gcn_A 7 AAIAEKDLGNAAYKQKDFEKAHVHYDKAIELDPSNITFYNNKAAVYF---------------------EEKKFAECVQFC 65 (127)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHH---------------------HTTCHHHHHHHH
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHhHHHHHH---------------------HhhhHHHHHHHH
Confidence 45678899999999999999999999999999999999999998888 799999999999
Q ss_pred HHHHhcCCCC-------HHHHHHHHHHHHHcCChhHHHHHHHHHHhcCCC
Q 012143 279 LAALKADPKA-------AHIWANLANAYYLTGDHRSSGKCLEKAAKLEPN 321 (470)
Q Consensus 279 ~~~~~~~p~~-------~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~p~ 321 (470)
+++++++|++ ..++..+|.++..+|++++|+.+|++++...|+
T Consensus 66 ~~al~~~~~~~~~~~~~a~~~~~lg~~~~~~~~~~~A~~~~~kal~~~~~ 115 (127)
T 4gcn_A 66 EKAVEVGRETRADYKLIAKAMSRAGNAFQKQNDLSLAVQWFHRSLSEFRD 115 (127)
T ss_dssp HHHHHHHHHTTCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSCC
T ss_pred HHHHHhCcccchhhHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCcC
Confidence 9999998875 358899999999999999999999999998886
|
| >3mv2_B Coatomer subunit epsilon; vesicular membrane coat COAT protein complex I, protein TRAN; 2.90A {Saccharomyces cerevisiae} PDB: 3mv3_B | Back alignment and structure |
|---|
Probab=99.59 E-value=1.6e-13 Score=117.66 Aligned_cols=243 Identities=9% Similarity=0.012 Sum_probs=170.5
Q ss_pred cCcccHHHHHHHHHHhhhcCccchHHHHHHHHHHHHcCChHHHHHHHHHHhhcCCCChHHHHHHHHHHHHcCCHHHHHHH
Q 012143 143 LEPEELEEILSKLKESMQSDTRQAVVWNTLGLILLKSGRLQSSISVLSSLLAVDPNNCDCIGNLGIAYFQSGDMEQSAKC 222 (470)
Q Consensus 143 ~~~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~la~~~~~~g~~~~A~~~ 222 (470)
+=.|+|..++....+.-..++ ....+.+.++|..+|++... .. .+....+...++..+. ++ |+..
T Consensus 24 fy~G~yq~~i~e~~~~~~~~~--~~~~~~~~Rs~iAlg~~~~~-------~~-~~~~~~a~~~la~~~~--~~---a~~~ 88 (310)
T 3mv2_B 24 YYTGNFVQCLQEIEKFSKVTD--NTLLFYKAKTLLALGQYQSQ-------DP-TSKLGKVLDLYVQFLD--TK---NIEE 88 (310)
T ss_dssp HTTTCHHHHTHHHHTSSCCCC--HHHHHHHHHHHHHTTCCCCC-------CS-SSTTHHHHHHHHHHHT--TT---CCHH
T ss_pred HHhhHHHHHHHHHHhcCccch--HHHHHHHHHHHHHcCCCccC-------CC-CCHHHHHHHHHHHHhc--cc---HHHH
Confidence 346788999886554322222 24556677889999998752 11 2222234445554442 32 8999
Q ss_pred HHHHHhhCCCChHHHHHHHHHHHhhhcccccccccchhhhhHHHhcCCHHHHHHHHHHHHhcCC--CCHHHHHHHHHHHH
Q 012143 223 FQDLILKDQNHPAALINYAALLLCKYGSVLAGAGANTGEGACLDQASAVNVAKECLLAALKADP--KAAHIWANLANAYY 300 (470)
Q Consensus 223 ~~~~l~~~p~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~p--~~~~~~~~la~~~~ 300 (470)
+++.+...+.....+..+|.++. ..|++++|++++.+.+..+| ++.+++..++.++.
T Consensus 89 l~~l~~~~~~~~~~~~~la~i~~---------------------~~g~~eeAL~~l~~~i~~~~~~~~lea~~l~vqi~L 147 (310)
T 3mv2_B 89 LENLLKDKQNSPYELYLLATAQA---------------------ILGDLDKSLETCVEGIDNDEAEGTTELLLLAIEVAL 147 (310)
T ss_dssp HHHTTTTSCCCHHHHHHHHHHHH---------------------HHTCHHHHHHHHHHHHTSSCSTTHHHHHHHHHHHHH
T ss_pred HHHHHhcCCCCcHHHHHHHHHHH---------------------HcCCHHHHHHHHHHHhccCCCcCcHHHHHHHHHHHH
Confidence 99998876666666667776666 79999999999999999987 78999999999999
Q ss_pred HcCChhHHHHHHHHHHhcCCC----cccHHHHHHHHHHHHhhhccCchHHhhhhHHHHHHHhhcCCCCCCCcHHHHHHHH
Q 012143 301 LTGDHRSSGKCLEKAAKLEPN----CMSTRYAVAVSRIKDAERSQEPTEQLSWAGNEMASILREGDPVQIEPPIAWAGFA 376 (470)
Q Consensus 301 ~~g~~~~A~~~~~~a~~~~p~----~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ 376 (470)
.+|+.+.|.+.++++.+.+|+ +.... ....-+
T Consensus 148 ~~~r~d~A~k~l~~~~~~~~d~~~~~d~~l--------------------------------------------~~Laea 183 (310)
T 3mv2_B 148 LNNNVSTASTIFDNYTNAIEDTVSGDNEMI--------------------------------------------LNLAES 183 (310)
T ss_dssp HTTCHHHHHHHHHHHHHHSCHHHHHHHHHH--------------------------------------------HHHHHH
T ss_pred HCCCHHHHHHHHHHHHhcCccccccchHHH--------------------------------------------HHHHHH
Confidence 999999999999999999883 11111 112222
Q ss_pred HHHhccc--cHHHHHHHHHHHhcchhh--hhHhhHHHHHHHhccHHHHHHHHHHHHhc----------CCCcHHHHHHHH
Q 012143 377 AVQKTHH--EVAAAFETEENELSKMEE--CAGAGESAFLDQASAVNVAKECLLAALKA----------DPKAAHIWANLA 442 (470)
Q Consensus 377 ~~~~~~~--~~~~A~~~~~~~~~~~~~--~~~~~l~~~~~~~~~~~~A~~~~~~al~~----------~p~~~~~~~~la 442 (470)
++....| ++.+|+..|++.....+. .....+. ++.++|++++|...++.+++. +|++++++.+++
T Consensus 184 ~v~l~~g~~~~q~A~~~f~El~~~~p~~~~~~lLln-~~~~~g~~~eAe~~L~~l~~~~p~~~~k~~~~p~~~~~LaN~i 262 (310)
T 3mv2_B 184 YIKFATNKETATSNFYYYEELSQTFPTWKTQLGLLN-LHLQQRNIAEAQGIVELLLSDYYSVEQKENAVLYKPTFLANQI 262 (310)
T ss_dssp HHHHHHTCSTTTHHHHHHHHHHTTSCSHHHHHHHHH-HHHHHTCHHHHHHHHHHHHSHHHHTTTCHHHHSSHHHHHHHHH
T ss_pred HHHHHhCCccHHHHHHHHHHHHHhCCCcccHHHHHH-HHHHcCCHHHHHHHHHHHHHhcccccccccCCCCCHHHHHHHH
Confidence 2233333 788888888886554432 2222222 788888888888888877766 477888888888
Q ss_pred HHHHHcCChHHHHHHHHHHHHhhccC
Q 012143 443 NAYYLTGDHRSSGKCLEKVLMVYCSS 468 (470)
Q Consensus 443 ~~~~~~g~~~~A~~~~~~al~~~~~~ 468 (470)
.+...+|+ +|.++++++.+..|+.
T Consensus 263 ~l~~~lgk--~a~~l~~qL~~~~P~h 286 (310)
T 3mv2_B 263 TLALMQGL--DTEDLTNQLVKLDHEH 286 (310)
T ss_dssp HHHHHTTC--TTHHHHHHHHHTTCCC
T ss_pred HHHHHhCh--HHHHHHHHHHHhCCCC
Confidence 88888887 7888888888877653
|
| >1elw_A TPR1-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, HSP70, protein binding, chaperone; 1.60A {Homo sapiens} SCOP: a.118.8.1 | Back alignment and structure |
|---|
Probab=99.59 E-value=8.1e-14 Score=103.96 Aligned_cols=114 Identities=19% Similarity=0.171 Sum_probs=89.5
Q ss_pred chHHHHHHHHHHHHcCChHHHHHHHHHHhhcCCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCChHHHHHHHHHH
Q 012143 165 QAVVWNTLGLILLKSGRLQSSISVLSSLLAVDPNNCDCIGNLGIAYFQSGDMEQSAKCFQDLILKDQNHPAALINYAALL 244 (470)
Q Consensus 165 ~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~l~~~~ 244 (470)
.+..++.+|.++...|++++|+..|++++..+|.++.++..+|.++...|++++|+..+++++..+|+++.++..+|.++
T Consensus 3 ~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~a~~~ 82 (118)
T 1elw_A 3 QVNELKEKGNKALSVGNIDDALQCYSEAIKLDPHNHVLYSNRSAAYAKKGDYQKAYEDGCKTVDLKPDWGKGYSRKAAAL 82 (118)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHcccHHHHHHHHHHHHHHCCCcHHHHHHHHHHHHhhccHHHHHHHHHHHHHhCcccHHHHHHHHHHH
Confidence 35667778888888888888888888888888888888888888888888888888888888888888777777777766
Q ss_pred HhhhcccccccccchhhhhHHHhcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHH
Q 012143 245 LCKYGSVLAGAGANTGEGACLDQASAVNVAKECLLAALKADPKAAHIWANLANAY 299 (470)
Q Consensus 245 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~la~~~ 299 (470)
. ..|++++|+.+++++++.+|+++.++..++.+.
T Consensus 83 ~---------------------~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~ 116 (118)
T 1elw_A 83 E---------------------FLNRFEEAKRTYEEGLKHEANNPQLKEGLQNME 116 (118)
T ss_dssp H---------------------HTTCHHHHHHHHHHHHTTCTTCHHHHHHHHHHH
T ss_pred H---------------------HHhhHHHHHHHHHHHHHcCCCCHHHHHHHHHhh
Confidence 6 577888888888888888888777777777654
|
| >3rkv_A Putative peptidylprolyl isomerase; structural genomics, APC102156, PSI-biology, midwest center structural genomics, MCSG; 2.41A {Caenorhabditis elegans} | Back alignment and structure |
|---|
Probab=99.59 E-value=1.3e-14 Score=115.32 Aligned_cols=117 Identities=18% Similarity=0.223 Sum_probs=82.6
Q ss_pred chHHHHHHHHHHHHcCChHHHHHHHHHHhhc------------------CCCChHHHHHHHHHHHHcCCHHHHHHHHHHH
Q 012143 165 QAVVWNTLGLILLKSGRLQSSISVLSSLLAV------------------DPNNCDCIGNLGIAYFQSGDMEQSAKCFQDL 226 (470)
Q Consensus 165 ~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~------------------~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~ 226 (470)
.+..+..+|..++..|+|++|+..|.+++.. +|.+..++.++|.++..+|++++|+..++++
T Consensus 10 ~a~~~~~~G~~~~~~~~~~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~~~~~~~A~~~~~~a 89 (162)
T 3rkv_A 10 SVEALRQKGNELFVQKDYKEAIDAYRDALTRLDTLILREKPGEPEWVELDRKNIPLYANMSQCYLNIGDLHEAEETSSEV 89 (162)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHTSCTTSHHHHHHHHTHHHHHHHHHHHHHHHTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcccCCCCHHHHHHHHHHHHHHHHHHHHHHHhcCcHHHHHHHHHHH
Confidence 3567888999999999999999999999988 4455566667777777777777777777777
Q ss_pred HhhCCCChHHHHHHHHHHHhhhcccccccccchhhhhHHHhcCCHHHHHHHHHHHHhcCCCCH-HHHHHHHHHHHHc
Q 012143 227 ILKDQNHPAALINYAALLLCKYGSVLAGAGANTGEGACLDQASAVNVAKECLLAALKADPKAA-HIWANLANAYYLT 302 (470)
Q Consensus 227 l~~~p~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~p~~~-~~~~~la~~~~~~ 302 (470)
+.++|+++.+++.+|.++. ..|++++|+..|++++.++|+++ .+...++.+....
T Consensus 90 l~~~p~~~~a~~~~g~~~~---------------------~~g~~~~A~~~~~~al~l~p~~~~~~~~~l~~~~~~~ 145 (162)
T 3rkv_A 90 LKREETNEKALFRRAKARI---------------------AAWKLDEAEEDLKLLLRNHPAAASVVAREMKIVTERR 145 (162)
T ss_dssp HHHSTTCHHHHHHHHHHHH---------------------HTTCHHHHHHHHHHHHHHCGGGHHHHHHHHHHHHHHH
T ss_pred HhcCCcchHHHHHHHHHHH---------------------HHhcHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHH
Confidence 7767766666666666665 56666666666666666666666 4455555554443
|
| >2fbn_A 70 kDa peptidylprolyl isomerase, putative; sulfur SAD, PFL2275C, TPR-containing domain, structural genomics; 1.63A {Plasmodium falciparum} SCOP: a.118.8.1 | Back alignment and structure |
|---|
Probab=99.59 E-value=5.2e-15 Score=121.96 Aligned_cols=146 Identities=14% Similarity=0.047 Sum_probs=115.3
Q ss_pred HHHHHHHHHHHHcCChHHHHHHHHHHhhcCCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCh------------
Q 012143 167 VVWNTLGLILLKSGRLQSSISVLSSLLAVDPNNCDCIGNLGIAYFQSGDMEQSAKCFQDLILKDQNHP------------ 234 (470)
Q Consensus 167 ~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~------------ 234 (470)
......+......|++++|.+.+.......+.....+..+|.+++..|++++|+..|++++...|.++
T Consensus 5 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~ 84 (198)
T 2fbn_A 5 HHHHHHSSGRENLYFQGAKKSIYDYTDEEKVQSAFDIKEEGNEFFKKNEINEAIVKYKEALDFFIHTEEWDDQILLDKKK 84 (198)
T ss_dssp -----------------CCCSGGGCCHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTTTCTTCCCHHHHHHHH
T ss_pred ccccchhhhhhhhhhccccCchhhCCHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhcccccchhhHHHHHH
Confidence 34445566777788888888888877777777788999999999999999999999999999999887
Q ss_pred ----HHHHHHHHHHHhhhcccccccccchhhhhHHHhcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCChhHHHH
Q 012143 235 ----AALINYAALLLCKYGSVLAGAGANTGEGACLDQASAVNVAKECLLAALKADPKAAHIWANLANAYYLTGDHRSSGK 310 (470)
Q Consensus 235 ----~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~la~~~~~~g~~~~A~~ 310 (470)
.++..+|.++. ..|++++|+.++++++..+|+++.+++.+|.++..+|++++|+.
T Consensus 85 ~~~~~~~~~la~~~~---------------------~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~~~~~~A~~ 143 (198)
T 2fbn_A 85 NIEISCNLNLATCYN---------------------KNKDYPKAIDHASKVLKIDKNNVKALYKLGVANMYFGFLEEAKE 143 (198)
T ss_dssp HHHHHHHHHHHHHHH---------------------HTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHTCHHHHHH
T ss_pred HHHHHHHHHHHHHHH---------------------HhcCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHcccHHHHHH
Confidence 55555555555 89999999999999999999999999999999999999999999
Q ss_pred HHHHHHhcCCCcccHHHHHHHHH
Q 012143 311 CLEKAAKLEPNCMSTRYAVAVSR 333 (470)
Q Consensus 311 ~~~~a~~~~p~~~~~~~~l~~~~ 333 (470)
+|++++.++|++..++..++...
T Consensus 144 ~~~~al~~~p~~~~~~~~l~~~~ 166 (198)
T 2fbn_A 144 NLYKAASLNPNNLDIRNSYELCV 166 (198)
T ss_dssp HHHHHHHHSTTCHHHHHHHHHHH
T ss_pred HHHHHHHHCCCcHHHHHHHHHHH
Confidence 99999999999988877766543
|
| >3gw4_A Uncharacterized protein; structural genomics, PSI-2, protein structure initiative, no structural genomics consortium, NESG, DRR162B; 2.49A {Deinococcus radiodurans R1} | Back alignment and structure |
|---|
Probab=99.58 E-value=2.5e-14 Score=118.37 Aligned_cols=160 Identities=11% Similarity=0.099 Sum_probs=126.5
Q ss_pred cCcccHHHHHHHHHHhhhcCccchHHHHHHHHHHHHcCChHHHHHHHHHHhhc------CCCChHHHHHHHHHHHHcCCH
Q 012143 143 LEPEELEEILSKLKESMQSDTRQAVVWNTLGLILLKSGRLQSSISVLSSLLAV------DPNNCDCIGNLGIAYFQSGDM 216 (470)
Q Consensus 143 ~~~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~------~~~~~~~~~~la~~~~~~g~~ 216 (470)
+..|++++|...++......+..+.++..+|.++...|++++|+..+++++.. .|....++..+|.++...|++
T Consensus 3 ~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~ 82 (203)
T 3gw4_A 3 FEAHDYALAERQAQALLAHPATASGARFMLGYVYAFMDRFDEARASFQALQQQAQKSGDHTAEHRALHQVGMVERMAGNW 82 (203)
T ss_dssp ----CHHHHHHHHHHHHTSTTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHTTCH
T ss_pred cccccHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHHcCCH
Confidence 56789999999665555434467889999999999999999999999999983 445567899999999999999
Q ss_pred HHHHHHHHHHHhh---CCCCh----HHHHHHHHHHHhhhcccccccccchhhhhHHHhcCCHHHHHHHHHHHHhcCCC--
Q 012143 217 EQSAKCFQDLILK---DQNHP----AALINYAALLLCKYGSVLAGAGANTGEGACLDQASAVNVAKECLLAALKADPK-- 287 (470)
Q Consensus 217 ~~A~~~~~~~l~~---~p~~~----~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~p~-- 287 (470)
++|+..+++++.+ .++++ .++..+| .++...|++++|+.++++++...+.
T Consensus 83 ~~A~~~~~~al~~~~~~~~~~~~~~~~~~~lg---------------------~~~~~~g~~~~A~~~~~~al~~~~~~~ 141 (203)
T 3gw4_A 83 DAARRCFLEERELLASLPEDPLAASANAYEVA---------------------TVALHFGDLAGARQEYEKSLVYAQQAD 141 (203)
T ss_dssp HHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHH---------------------HHHHHHTCHHHHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHHHHHcCccHHHHHHHHHHHH---------------------HHHHHhCCHHHHHHHHHHHHHHHHhcc
Confidence 9999999999987 34332 2344444 4445899999999999999976332
Q ss_pred ----CHHHHHHHHHHHHHcCChhHHHHHHHHHHhcCCCcc
Q 012143 288 ----AAHIWANLANAYYLTGDHRSSGKCLEKAAKLEPNCM 323 (470)
Q Consensus 288 ----~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~p~~~ 323 (470)
...++..+|.++...|++++|+.++++++.+.....
T Consensus 142 ~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~ 181 (203)
T 3gw4_A 142 DQVAIACAFRGLGDLAQQEKNLLEAQQHWLRARDIFAELE 181 (203)
T ss_dssp CHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTT
T ss_pred chHHHHHHHHHHHHHHHHCcCHHHHHHHHHHHHHHHHHcC
Confidence 234568999999999999999999999998765443
|
| >2vyi_A SGTA protein; chaperone, TPR repeat, phosphoprotein, tetratricopeptide repeat protein, HOST-virus interaction; 2.4A {Homo sapiens} SCOP: k.38.1.1 | Back alignment and structure |
|---|
Probab=99.58 E-value=4.1e-14 Score=107.78 Aligned_cols=90 Identities=13% Similarity=0.210 Sum_probs=74.4
Q ss_pred HHhhhcCccchHHHHHHHHHHHHcCChHHHHHHHHHHhhcCCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCChH
Q 012143 156 KESMQSDTRQAVVWNTLGLILLKSGRLQSSISVLSSLLAVDPNNCDCIGNLGIAYFQSGDMEQSAKCFQDLILKDQNHPA 235 (470)
Q Consensus 156 ~~~~~~~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~ 235 (470)
++++...|+++.++..+|.++...|++++|+.++++++..+|+++.++..+|.++...|++++|+..|++++..+|++..
T Consensus 36 ~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~p~~~~ 115 (131)
T 2vyi_A 36 GKAIELNPANAVYFCNRAAAYSKLGNYAGAVQDCERAICIDPAYSKAYGRMGLALSSLNKHVEAVAYYKKALELDPDNET 115 (131)
T ss_dssp HHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHH
T ss_pred HHHHHcCCCCHHHHHHHHHHHHHhhchHHHHHHHHHHHhcCccCHHHHHHHHHHHHHhCCHHHHHHHHHHHHhcCccchH
Confidence 33333356667788888888888888888888888888888888888888888888888888888888888888888888
Q ss_pred HHHHHHHHHH
Q 012143 236 ALINYAALLL 245 (470)
Q Consensus 236 ~~~~l~~~~~ 245 (470)
++..++.++.
T Consensus 116 ~~~~l~~~~~ 125 (131)
T 2vyi_A 116 YKSNLKIAEL 125 (131)
T ss_dssp HHHHHHHHHH
T ss_pred HHHHHHHHHH
Confidence 8888887776
|
| >2dba_A Smooth muscle cell associated protein-1, isoform 2; tetratricopeptide repeat, structural genomics, NPPSFA; NMR {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.57 E-value=6.1e-14 Score=109.48 Aligned_cols=121 Identities=17% Similarity=0.126 Sum_probs=107.2
Q ss_pred hhcCccchHHHHHHHHHHHHcCChHHHHHHHHHHhhcCCCC---hHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCChH
Q 012143 159 MQSDTRQAVVWNTLGLILLKSGRLQSSISVLSSLLAVDPNN---CDCIGNLGIAYFQSGDMEQSAKCFQDLILKDQNHPA 235 (470)
Q Consensus 159 ~~~~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~---~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~ 235 (470)
....|.+...++.+|..+...|++++|+..|+++++.+|++ ..++..+|.++...|++++|+..+++++..+|+++.
T Consensus 21 ~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~ 100 (148)
T 2dba_A 21 ATPGASSVEQLRKEGNELFKCGDYGGALAAYTQALGLDATPQDQAVLHRNRAACHLKLEDYDKAETEASKAIEKDGGDVK 100 (148)
T ss_dssp CCTTCCCHHHHHHHHHHHHTTTCHHHHHHHHHHHHTSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTSCCHH
T ss_pred CccchHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHcccchHHHHHHHHHHHHHHHHccHHHHHHHHHHHHhhCccCHH
Confidence 34567788899999999999999999999999999999987 888999999999999999999999999999999988
Q ss_pred HHHHHHHHHHhhhcccccccccchhhhhHHHhcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHH
Q 012143 236 ALINYAALLLCKYGSVLAGAGANTGEGACLDQASAVNVAKECLLAALKADPKAAHIWANLANAYY 300 (470)
Q Consensus 236 ~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~la~~~~ 300 (470)
++..+|.++. ..|++++|+.+|++++..+|++..++..++.+..
T Consensus 101 ~~~~~a~~~~---------------------~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~ 144 (148)
T 2dba_A 101 ALYRRSQALE---------------------KLGRLDQAVLDLQRCVSLEPKNKVFQEALRNISG 144 (148)
T ss_dssp HHHHHHHHHH---------------------HHTCHHHHHHHHHHHHHHCSSCHHHHHHHHHHHC
T ss_pred HHHHHHHHHH---------------------HcCCHHHHHHHHHHHHHcCCCcHHHHHHHHHHHh
Confidence 8888888777 6899999999999999999999888888877653
|
| >1wao_1 Serine/threonine protein phosphatase 5; hydrolase, protein-protein interactions, TPR, super-helix,; 2.9A {Homo sapiens} SCOP: a.118.8.1 d.159.1.3 | Back alignment and structure |
|---|
Probab=99.57 E-value=1.1e-15 Score=143.12 Aligned_cols=138 Identities=14% Similarity=0.088 Sum_probs=83.5
Q ss_pred hHHHHHHHHHHHHcCChHHHHHHHHHHhhcCCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCChHHHHHHHHHHH
Q 012143 166 AVVWNTLGLILLKSGRLQSSISVLSSLLAVDPNNCDCIGNLGIAYFQSGDMEQSAKCFQDLILKDQNHPAALINYAALLL 245 (470)
Q Consensus 166 ~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~l~~~~~ 245 (470)
+.++..+|.++...|++++|+..|+++++.+|+++.++..+|.++..+|++++|+..++++++++|+++.++..+|.++.
T Consensus 6 a~~~~~lg~~~~~~g~~~~A~~~~~~Al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~p~~~~~~~~lg~~~~ 85 (477)
T 1wao_1 6 AEELKTQANDYFKAKDYENAIKFYSQAIELNPSNAIYYGNRSLAYLRTECYGYALGDATRAIELDKKYIKGYYRRAASNM 85 (477)
T ss_dssp HTTSSSSSSSTTTTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHSCTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHH
Confidence 33444555556666666666666666666666666666666666666666666666666666666666666666655555
Q ss_pred hhhcccccccccchhhhhHHHhcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHH--HHHcCChhHHHHHHH----------
Q 012143 246 CKYGSVLAGAGANTGEGACLDQASAVNVAKECLLAALKADPKAAHIWANLANA--YYLTGDHRSSGKCLE---------- 313 (470)
Q Consensus 246 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~la~~--~~~~g~~~~A~~~~~---------- 313 (470)
..|++++|+..|+++++++|++..++..++.+ +...|++++|+..++
T Consensus 86 ---------------------~~g~~~eA~~~~~~al~~~p~~~~~~~~l~~~~~~~~~g~~~~A~~~~~~~~~~~~~~~ 144 (477)
T 1wao_1 86 ---------------------ALGKFRAALRDYETVVKVKPHDKDAKMKYQECNKIVKQKAFERAIAGDEHKRSVVDSLD 144 (477)
T ss_dssp ---------------------HHTCHHHHHHHHHHHHHHSTTCTTHHHHHHHHHHHHHHHHHCCC------CCSTTTCCT
T ss_pred ---------------------HcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHHHhccccccchhHhhhh
Confidence 46666666666666666666666666666666 666677777777777
Q ss_pred -HHHhcCCCccc
Q 012143 314 -KAAKLEPNCMS 324 (470)
Q Consensus 314 -~a~~~~p~~~~ 324 (470)
+++...|+...
T Consensus 145 ~~al~~~~~~~~ 156 (477)
T 1wao_1 145 IESMTIEDEYSG 156 (477)
T ss_dssp TSSCCCCTTCCS
T ss_pred hhhccccccccc
Confidence 66666665433
|
| >2lni_A Stress-induced-phosphoprotein 1; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative, chaperone; NMR {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.57 E-value=9.4e-14 Score=106.16 Aligned_cols=117 Identities=19% Similarity=0.213 Sum_probs=108.8
Q ss_pred CCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCChHHHHHHHHHHHhhhcccccccccchhhhhHHHhcCCHHHHH
Q 012143 196 DPNNCDCIGNLGIAYFQSGDMEQSAKCFQDLILKDQNHPAALINYAALLLCKYGSVLAGAGANTGEGACLDQASAVNVAK 275 (470)
Q Consensus 196 ~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~ 275 (470)
.|.++..+..+|.++...|++++|+..|++++..+|.+..++..+|.++. ..|++++|+
T Consensus 12 ~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~la~~~~---------------------~~~~~~~A~ 70 (133)
T 2lni_A 12 NPDLALMVKNKGNECFQKGDYPQAMKHYTEAIKRNPKDAKLYSNRAACYT---------------------KLLEFQLAL 70 (133)
T ss_dssp SSCHHHHHHHHHHHHHHTTCSHHHHHHHHHHHTTCTTCHHHHHHHHHHHT---------------------TTTCHHHHH
T ss_pred CcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCcHHHHHHHHHHHH---------------------HhccHHHHH
Confidence 45678899999999999999999999999999999999999998888876 799999999
Q ss_pred HHHHHHHhcCCCCHHHHHHHHHHHHHcCChhHHHHHHHHHHhcCCCcccHHHHHHHHH
Q 012143 276 ECLLAALKADPKAAHIWANLANAYYLTGDHRSSGKCLEKAAKLEPNCMSTRYAVAVSR 333 (470)
Q Consensus 276 ~~~~~~~~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~p~~~~~~~~l~~~~ 333 (470)
.+++++++.+|+++.++..+|.++...|++++|+.+|++++..+|.+..++..++...
T Consensus 71 ~~~~~a~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~ 128 (133)
T 2lni_A 71 KDCEECIQLEPTFIKGYTRKAAALEAMKDYTKAMDVYQKALDLDSSCKEAADGYQRCM 128 (133)
T ss_dssp HHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCGGGTHHHHHHHHHH
T ss_pred HHHHHHHHhCCCchHHHHHHHHHHHHHhhHHHHHHHHHHHHHhCCCchHHHHHHHHHH
Confidence 9999999999999999999999999999999999999999999999988887776543
|
| >3q49_B STIP1 homology and U box-containing protein 1; E3 ubiquitin ligase, ligase-chaperone complex; 1.54A {Mus musculus} PDB: 3q47_B 3q4a_B* | Back alignment and structure |
|---|
Probab=99.57 E-value=8.3e-14 Score=107.18 Aligned_cols=107 Identities=15% Similarity=0.114 Sum_probs=100.9
Q ss_pred hcCCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCChHHHHHHHHHHHhhhcccccccccchhhhhHHHhcCCHHH
Q 012143 194 AVDPNNCDCIGNLGIAYFQSGDMEQSAKCFQDLILKDQNHPAALINYAALLLCKYGSVLAGAGANTGEGACLDQASAVNV 273 (470)
Q Consensus 194 ~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 273 (470)
..+|.++..+..+|.++...|++++|+..|++++..+|.++.++..+|.++. ..|++++
T Consensus 3 ~~~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~l~~~~~---------------------~~~~~~~ 61 (137)
T 3q49_B 3 HMKSPSAQELKEQGNRLFVGRKYPEAAACYGRAITRNPLVAVYYTNRALCYL---------------------KMQQPEQ 61 (137)
T ss_dssp ---CCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHH---------------------HTTCHHH
T ss_pred CCccccHHHHHHHHHHHHHhCcHHHHHHHHHHHHhhCcCcHHHHHHHHHHHH---------------------HhcCHHH
Confidence 3567889999999999999999999999999999999999999999998887 7999999
Q ss_pred HHHHHHHHHhcCCCCHHHHHHHHHHHHHcCChhHHHHHHHHHHhcCCC
Q 012143 274 AKECLLAALKADPKAAHIWANLANAYYLTGDHRSSGKCLEKAAKLEPN 321 (470)
Q Consensus 274 A~~~~~~~~~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~p~ 321 (470)
|+..+++++..+|+++.++..+|.++...|++++|+..|++++..+|+
T Consensus 62 A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~p~ 109 (137)
T 3q49_B 62 ALADCRRALELDGQSVKAHFFLGQCQLEMESYDEAIANLQRAYSLAKE 109 (137)
T ss_dssp HHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhCchhHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHChh
Confidence 999999999999999999999999999999999999999999999988
|
| >2if4_A ATFKBP42; FKBP-like, alpha-beta, TPR-like, alpha, signaling protein; 2.85A {Arabidopsis thaliana} | Back alignment and structure |
|---|
Probab=99.56 E-value=2.9e-15 Score=134.12 Aligned_cols=149 Identities=12% Similarity=0.097 Sum_probs=97.8
Q ss_pred HHHhhhcCccchHHHHHHHHHHHHcCChHHHHHHHHHHhhcCCCCh-----------------HHHHHHHHHHHHcCCHH
Q 012143 155 LKESMQSDTRQAVVWNTLGLILLKSGRLQSSISVLSSLLAVDPNNC-----------------DCIGNLGIAYFQSGDME 217 (470)
Q Consensus 155 ~~~~~~~~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~-----------------~~~~~la~~~~~~g~~~ 217 (470)
+...+...+..+..+..+|..++..|++++|+..|++++...|++. .++.++|.++..+|+++
T Consensus 168 ~~~~~~~~~~~a~~~~~~g~~~~~~g~~~~A~~~y~~Al~~~p~~~~~~~~~~~~~~~~~l~~~~~~nla~~~~~~g~~~ 247 (338)
T 2if4_A 168 SDMTVEERIGAADRRKMDGNSLFKEEKLEEAMQQYEMAIAYMGDDFMFQLYGKYQDMALAVKNPCHLNIAACLIKLKRYD 247 (338)
T ss_dssp TBCCHHHHHHHHHHHHHHHHHTCSSSCCHHHHHHHHHHHHHSCHHHHHTCCHHHHHHHHHHHTHHHHHHHHHHHTTTCCH
T ss_pred ccCCHHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHhccchhhhhcccHHHHHHHHHHHHHHHHHHHHHHcCCHH
Confidence 3333444566678899999999999999999999999999999876 48999999999999999
Q ss_pred HHHHHHHHHHhhCCCChHHHHHHHHHHHhhhcccccccccchhhhhHHHhcCCHHHHHHHHHHHHhcCCCCHHHHHHHHH
Q 012143 218 QSAKCFQDLILKDQNHPAALINYAALLLCKYGSVLAGAGANTGEGACLDQASAVNVAKECLLAALKADPKAAHIWANLAN 297 (470)
Q Consensus 218 ~A~~~~~~~l~~~p~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~la~ 297 (470)
+|+..+++++.++|++..+++.+|.++. ..|++++|+..|+++++++|++..++..++.
T Consensus 248 ~A~~~~~~al~~~p~~~~a~~~lg~a~~---------------------~~g~~~~A~~~l~~al~l~p~~~~a~~~L~~ 306 (338)
T 2if4_A 248 EAIGHCNIVLTEEEKNPKALFRRGKAKA---------------------ELGQMDSARDDFRKAQKYAPDDKAIRRELRA 306 (338)
T ss_dssp HHHHHHHHHHHHCTTCHHHHHHHHHHHH---------------------TTTCHHHHHHHHHHTTC--------------
T ss_pred HHHHHHHHHHHhCCCCHHHHHHHHHHHH---------------------HcCCHHHHHHHHHHHHHHCCCCHHHHHHHHH
Confidence 9999999999999999999999998887 7999999999999999999999999999999
Q ss_pred H-HHHcCChhHHHHHHHHHHhcCCCccc
Q 012143 298 A-YYLTGDHRSSGKCLEKAAKLEPNCMS 324 (470)
Q Consensus 298 ~-~~~~g~~~~A~~~~~~a~~~~p~~~~ 324 (470)
+ ....+..+++...|.+++...|+++.
T Consensus 307 l~~~~~~~~~~a~~~~~~~l~~~p~~~~ 334 (338)
T 2if4_A 307 LAEQEKALYQKQKEMYKGIFKGKDEGGA 334 (338)
T ss_dssp ----------------------------
T ss_pred HHHHHHHHHHHHHHHHHHhhCCCCCCCC
Confidence 8 45567788899999999999998653
|
| >1wao_1 Serine/threonine protein phosphatase 5; hydrolase, protein-protein interactions, TPR, super-helix,; 2.9A {Homo sapiens} SCOP: a.118.8.1 d.159.1.3 | Back alignment and structure |
|---|
Probab=99.56 E-value=3.4e-14 Score=133.13 Aligned_cols=128 Identities=8% Similarity=0.125 Sum_probs=113.3
Q ss_pred ccCcccHHHHHHHHHHhhhcCccchHHHHHHHHHHHHcCChHHHHHHHHHHhhcCCCChHHHHHHHHHHHHcCCHHHHHH
Q 012143 142 ELEPEELEEILSKLKESMQSDTRQAVVWNTLGLILLKSGRLQSSISVLSSLLAVDPNNCDCIGNLGIAYFQSGDMEQSAK 221 (470)
Q Consensus 142 ~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~la~~~~~~g~~~~A~~ 221 (470)
+...|++++|+..|+++++.+|+++.++..+|.++..+|++++|+..|+++++++|+++.++..+|.+|..+|++++|++
T Consensus 16 ~~~~g~~~~A~~~~~~Al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~p~~~~~~~~lg~~~~~~g~~~eA~~ 95 (477)
T 1wao_1 16 YFKAKDYENAIKFYSQAIELNPSNAIYYGNRSLAYLRTECYGYALGDATRAIELDKKYIKGYYRRAASNMALGKFRAALR 95 (477)
T ss_dssp TTTTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHSCTTCHHHHHHHHHHHHHHTCHHHHHH
T ss_pred HHHhCCHHHHHHHHHHHHHhCCccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHH
Confidence 67888999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHhhCCCChHHHHHHHHHHHhhhcccccccccchhhhhHHHhcCCHHHHHHHHH-----------HHHhcCCCC
Q 012143 222 CFQDLILKDQNHPAALINYAALLLCKYGSVLAGAGANTGEGACLDQASAVNVAKECLL-----------AALKADPKA 288 (470)
Q Consensus 222 ~~~~~l~~~p~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~-----------~~~~~~p~~ 288 (470)
.|+++++++|++..++..++.+.. +...|++++|++.++ +++.+.|+.
T Consensus 96 ~~~~al~~~p~~~~~~~~l~~~~~-------------------~~~~g~~~~A~~~~~~~~~~~~~~~~~al~~~~~~ 154 (477)
T 1wao_1 96 DYETVVKVKPHDKDAKMKYQECNK-------------------IVKQKAFERAIAGDEHKRSVVDSLDIESMTIEDEY 154 (477)
T ss_dssp HHHHHHHHSTTCTTHHHHHHHHHH-------------------HHHHHHHCCC------CCSTTTCCTTSSCCCCTTC
T ss_pred HHHHHHHhCCCCHHHHHHHHHHHH-------------------HHHHHHHHHHhccccccchhHhhhhhhhccccccc
Confidence 999999999999999988887722 126789999999999 777777763
|
| >4b4t_Q 26S proteasome regulatory subunit RPN6; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=99.55 E-value=1.9e-13 Score=127.46 Aligned_cols=233 Identities=12% Similarity=0.119 Sum_probs=171.8
Q ss_pred CcccchhhhhhhhhhhhhhhhHHHHHHHHHHHHhcCCCCcchhhhcccchhhhhcChhhHHHHHHHHHHhCCCChhHHHH
Q 012143 1 MSKEMDVAEVEGKKINKLGKCRSRISSKMDSALEFGVDADGDQSGLGTSSSSREEKVSSLKTGLVHVARKMPKNAHAHFL 80 (470)
Q Consensus 1 ~~~~~~~~~~~~~~~~~~g~~~~a~~~~~~~~l~~~p~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~ 80 (470)
||...+. -.+++.+.+.|++.+|+ ..+.++++..|+........+.. ....+..+ .++..
T Consensus 1 ~s~p~~~-l~~a~~l~~~~~y~eA~-~~~~~~l~~~~~~~~~~~~~~~~-~~~~~~~~-----------------~al~~ 60 (434)
T 4b4t_Q 1 MSLPGSK-LEEARRLVNEKQYNEAE-QVYLSLLDKDSSQSSAAAGASVD-DKRRNEQE-----------------TSILE 60 (434)
T ss_dssp CCSTTHH-HHHHHHHHHHTCHHHHH-HHHHHHHHSCCCSSSBSSSSSBC-SHHHHHHH-----------------HHHHH
T ss_pred CCChHHH-HHHHHHHHHCCCHHHHH-HHHHHHHhhCcccchhHHHHHHH-HHHhhhHH-----------------HHHHH
Confidence 4444443 34678889999999999 99999999999888777776666 33333222 24578
Q ss_pred HHHHHHHhCChhHHHHHHHHHHHHHhhhhcccchhhhHHHHHHhhhccccccccCCCccccccCcccHHHHHHHHHHhhh
Q 012143 81 LGLMYQRLGQPLKAVSSYEKAEEILLRCEADIARPELLSLVQIHHAQCLLPESSGDNSLDKELEPEELEEILSKLKESMQ 160 (470)
Q Consensus 81 l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~ 160 (470)
+|.+|...|++++|++++.+++...+.... ......+...++.++ ...|++++|+..+++++.
T Consensus 61 l~~~y~~~~~~~~a~~~~~~~~~~~~~~~~------~~~~~~~~~~l~~~~-----------~~~~~~~~a~~~~~~~~~ 123 (434)
T 4b4t_Q 61 LGQLYVTMGAKDKLREFIPHSTEYMMQFAK------SKTVKVLKTLIEKFE-----------QVPDSLDDQIFVCEKSIE 123 (434)
T ss_dssp HHHHHHHHTCHHHHHHHHHHTHHHHHTSCH------HHHHHHHHHHHHHHC-----------SCCSCHHHHHHHHHHHHH
T ss_pred HHHHHHHCCCHHHHHHHHHHHHHHHHHccc------hHHHHHHHHHHHHHH-----------hCCCCHHHHHHHHHHHHH
Confidence 999999999999999999999988654321 111122233333333 345677999999999886
Q ss_pred cCc------cchHHHHHHHHHHHHcCChHHHHHHHHHHhhc------CCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHh
Q 012143 161 SDT------RQAVVWNTLGLILLKSGRLQSSISVLSSLLAV------DPNNCDCIGNLGIAYFQSGDMEQSAKCFQDLIL 228 (470)
Q Consensus 161 ~~p------~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~------~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~ 228 (470)
..+ ....++..+|.++...|+|.+|+..+++++.. .|....++..+|.+|...|++++|...+++++.
T Consensus 124 ~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~ 203 (434)
T 4b4t_Q 124 FAKREKRVFLKHSLSIKLATLHYQKKQYKDSLALINDLLREFKKLDDKPSLVDVHLLESKVYHKLRNLAKSKASLTAART 203 (434)
T ss_dssp HHHHSSCCSSHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHTTSSCSTHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHhCccHHHHHHHHHHHHHHHHccChHHHHHHHHHHHHHHHhcccchhHHHHHHHHHHHHHHhCcHHHHHHHHHHHHH
Confidence 533 33668899999999999999999999998875 233467899999999999999999999999998
Q ss_pred hCCCChHHHHHHHHHHHhhhcccccccccchhhhhHHHhcCCHHHHHHHHHHHHhc
Q 012143 229 KDQNHPAALINYAALLLCKYGSVLAGAGANTGEGACLDQASAVNVAKECLLAALKA 284 (470)
Q Consensus 229 ~~p~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~ 284 (470)
..+.........+.++.. .|.++...|++.+|..+|.+++..
T Consensus 204 ~~~~~~~~~~~~~~~~~~--------------~g~~~~~~~~y~~A~~~~~~a~~~ 245 (434)
T 4b4t_Q 204 AANSIYCPTQTVAELDLM--------------SGILHCEDKDYKTAFSYFFESFES 245 (434)
T ss_dssp HHHHSCCCHHHHHHHHHH--------------HHHHTTSSSCHHHHHHHHHHHHHH
T ss_pred HhhcCCCchHHHHHHHHH--------------HHHHHHHHHhHHHHHHHHHHHHHH
Confidence 755433322333333332 356666899999999999999865
|
| >2xev_A YBGF; tetratricopeptide, alpha-helical, metal binding; 1.57A {Xanthomonas campestris} | Back alignment and structure |
|---|
Probab=99.55 E-value=1.9e-13 Score=103.91 Aligned_cols=115 Identities=16% Similarity=0.240 Sum_probs=79.1
Q ss_pred HHHHHHHHHHHHcCChHHHHHHHHHHhhcCCCCh---HHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCC---hHHHHHH
Q 012143 167 VVWNTLGLILLKSGRLQSSISVLSSLLAVDPNNC---DCIGNLGIAYFQSGDMEQSAKCFQDLILKDQNH---PAALINY 240 (470)
Q Consensus 167 ~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~---~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~---~~~~~~l 240 (470)
.+++.+|.++...|++++|+..|+++++.+|+++ .+++.+|.++...|++++|+..|++++..+|++ +.+++.+
T Consensus 3 ~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~~~~lg~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~~~~l 82 (129)
T 2xev_A 3 RTAYNVAFDALKNGKYDDASQLFLSFLELYPNGVYTPNALYWLGESYYATRNFQLAEAQFRDLVSRYPTHDKAAGGLLKL 82 (129)
T ss_dssp CCHHHHHHHHHHTTCHHHHHHHHHHHHHHCSSSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTSTTHHHHHHHH
T ss_pred HHHHHHHHHHHHhCCHHHHHHHHHHHHHHCCCCcccHHHHHHHHHHHHHhccHHHHHHHHHHHHHHCCCCcccHHHHHHH
Confidence 3456677777777777777777777777777766 577777777777777777777777777777776 5556666
Q ss_pred HHHHHhhhcccccccccchhhhhHHHhcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHc
Q 012143 241 AALLLCKYGSVLAGAGANTGEGACLDQASAVNVAKECLLAALKADPKAAHIWANLANAYYLT 302 (470)
Q Consensus 241 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~la~~~~~~ 302 (470)
|.++. ..|++++|+..|++++...|+++.+...+..+....
T Consensus 83 a~~~~---------------------~~g~~~~A~~~~~~~~~~~p~~~~~~~a~~~l~~l~ 123 (129)
T 2xev_A 83 GLSQY---------------------GEGKNTEAQQTLQQVATQYPGSDAARVAQERLQSIR 123 (129)
T ss_dssp HHHHH---------------------HTTCHHHHHHHHHHHHHHSTTSHHHHHHHHHHHHHC
T ss_pred HHHHH---------------------HcCCHHHHHHHHHHHHHHCCCChHHHHHHHHHHHHH
Confidence 65555 567777777777777777777666655555444433
|
| >2kck_A TPR repeat; tetratricopeptide repeat, structural genomics, unknown function, PSI-2, protein structure initiative; NMR {Methanococcus maripaludis} | Back alignment and structure |
|---|
Probab=99.55 E-value=6.4e-14 Score=103.45 Aligned_cols=106 Identities=15% Similarity=0.169 Sum_probs=59.0
Q ss_pred CCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCChHHHHHHHHHHHhhhcccccccccchhhhhHHHhcCCHHHHH
Q 012143 196 DPNNCDCIGNLGIAYFQSGDMEQSAKCFQDLILKDQNHPAALINYAALLLCKYGSVLAGAGANTGEGACLDQASAVNVAK 275 (470)
Q Consensus 196 ~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~ 275 (470)
+|+++.++..+|.++...|++++|+..|++++..+|.+..++..+|.++. ..|++++|+
T Consensus 2 ~p~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~a~~~~---------------------~~~~~~~A~ 60 (112)
T 2kck_A 2 VDQNPEEYYLEGVLQYDAGNYTESIDLFEKAIQLDPEESKYWLMKGKALY---------------------NLERYEEAV 60 (112)
T ss_dssp CCSSTTGGGGHHHHHHSSCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHH---------------------HTTCHHHHH
T ss_pred CCCcHHHHHHHHHHHHHhhhHHHHHHHHHHHHHhCcCCHHHHHHHHHHHH---------------------HccCHHHHH
Confidence 34455555555555555555555555555555555555555555554444 455555555
Q ss_pred HHHHHHHhcCCC--CHHHHHHHHHHHHHc-CChhHHHHHHHHHHhcCCCc
Q 012143 276 ECLLAALKADPK--AAHIWANLANAYYLT-GDHRSSGKCLEKAAKLEPNC 322 (470)
Q Consensus 276 ~~~~~~~~~~p~--~~~~~~~la~~~~~~-g~~~~A~~~~~~a~~~~p~~ 322 (470)
.+++++++..|. +..++..+|.++... |++++|+.++++++...|.+
T Consensus 61 ~~~~~a~~~~~~~~~~~~~~~l~~~~~~~~~~~~~A~~~~~~~~~~~p~~ 110 (112)
T 2kck_A 61 DCYNYVINVIEDEYNKDVWAAKADALRYIEGKEVEAEIAEARAKLEHHHH 110 (112)
T ss_dssp HHHHHHHHTSCCTTCHHHHHHHHHHHTTCSSCSHHHHHHHHHHGGGCCCC
T ss_pred HHHHHHHHhCcccchHHHHHHHHHHHHHHhCCHHHHHHHHHHHhhcccCC
Confidence 555555555555 555555555555555 56666666666555555543
|
| >2kck_A TPR repeat; tetratricopeptide repeat, structural genomics, unknown function, PSI-2, protein structure initiative; NMR {Methanococcus maripaludis} | Back alignment and structure |
|---|
Probab=99.54 E-value=5.8e-14 Score=103.71 Aligned_cols=107 Identities=14% Similarity=0.147 Sum_probs=100.1
Q ss_pred CccchHHHHHHHHHHHHcCChHHHHHHHHHHhhcCCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCC--ChHHHHH
Q 012143 162 DTRQAVVWNTLGLILLKSGRLQSSISVLSSLLAVDPNNCDCIGNLGIAYFQSGDMEQSAKCFQDLILKDQN--HPAALIN 239 (470)
Q Consensus 162 ~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~--~~~~~~~ 239 (470)
+|+++.++..+|.++...|++++|+..|+++++.+|.+..++..+|.++...|++++|+..++++++.+|. +..++..
T Consensus 2 ~p~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~ 81 (112)
T 2kck_A 2 VDQNPEEYYLEGVLQYDAGNYTESIDLFEKAIQLDPEESKYWLMKGKALYNLERYEEAVDCYNYVINVIEDEYNKDVWAA 81 (112)
T ss_dssp CCSSTTGGGGHHHHHHSSCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTSCCTTCHHHHHH
T ss_pred CCCcHHHHHHHHHHHHHhhhHHHHHHHHHHHHHhCcCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCcccchHHHHHH
Confidence 68888999999999999999999999999999999999999999999999999999999999999999999 9999888
Q ss_pred HHHHHHhhhcccccccccchhhhhHHHhc-CCHHHHHHHHHHHHhcCCCCH
Q 012143 240 YAALLLCKYGSVLAGAGANTGEGACLDQA-SAVNVAKECLLAALKADPKAA 289 (470)
Q Consensus 240 l~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~A~~~~~~~~~~~p~~~ 289 (470)
++.++. .. |++++|++++++++...|.++
T Consensus 82 l~~~~~---------------------~~~~~~~~A~~~~~~~~~~~p~~~ 111 (112)
T 2kck_A 82 KADALR---------------------YIEGKEVEAEIAEARAKLEHHHHH 111 (112)
T ss_dssp HHHHHT---------------------TCSSCSHHHHHHHHHHGGGCCCCC
T ss_pred HHHHHH---------------------HHhCCHHHHHHHHHHHhhcccCCC
Confidence 888877 79 999999999999999998753
|
| >1zu2_A Mitochondrial import receptor subunit TOM20-3; TPR, tetratricopeptide repeat like, TPR-like, transport protein; NMR {Arabidopsis thaliana} SCOP: a.118.8.1 | Back alignment and structure |
|---|
Probab=99.54 E-value=1.7e-14 Score=109.90 Aligned_cols=99 Identities=18% Similarity=0.261 Sum_probs=90.3
Q ss_pred cCcccHHHHHHHHHHhhhcCccchHHHHHHHHHHHHcCCh----------HHHHHHHHHHhhcCCCChHHHHHHHHHHHH
Q 012143 143 LEPEELEEILSKLKESMQSDTRQAVVWNTLGLILLKSGRL----------QSSISVLSSLLAVDPNNCDCIGNLGIAYFQ 212 (470)
Q Consensus 143 ~~~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~~~~----------~~A~~~~~~a~~~~~~~~~~~~~la~~~~~ 212 (470)
-+.+.+++|+..++++++.+|+++++|.++|.++...+++ ++|+..|+++++++|++..+++++|.+|..
T Consensus 13 ~r~~~feeA~~~~~~Ai~l~P~~aea~~n~G~~l~~l~~~~~g~~al~~~~eAi~~le~AL~ldP~~~~A~~~LG~ay~~ 92 (158)
T 1zu2_A 13 DRILLFEQIRQDAENTYKSNPLDADNLTRWGGVLLELSQFHSISDAKQMIQEAITKFEEALLIDPKKDEAVWCIGNAYTS 92 (158)
T ss_dssp HHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHH
T ss_pred HHHhHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHhcccchhhhhHhHHHHHHHHHHHHHHhCcCcHHHHHHHHHHHHH
Confidence 3567899999999999999999999999999999999876 599999999999999999999999999998
Q ss_pred cC-----------CHHHHHHHHHHHHhhCCCChHHHHHHH
Q 012143 213 SG-----------DMEQSAKCFQDLILKDQNHPAALINYA 241 (470)
Q Consensus 213 ~g-----------~~~~A~~~~~~~l~~~p~~~~~~~~l~ 241 (470)
+| ++++|+.+|+++++++|++...+..+.
T Consensus 93 lg~l~P~~~~a~g~~~eA~~~~~kAl~l~P~~~~y~~al~ 132 (158)
T 1zu2_A 93 FAFLTPDETEAKHNFDLATQFFQQAVDEQPDNTHYLKSLE 132 (158)
T ss_dssp HHHHCCCHHHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHH
T ss_pred hcccCcchhhhhccHHHHHHHHHHHHHhCCCCHHHHHHHH
Confidence 85 899999999999999999876554443
|
| >1elw_A TPR1-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, HSP70, protein binding, chaperone; 1.60A {Homo sapiens} SCOP: a.118.8.1 | Back alignment and structure |
|---|
Probab=99.54 E-value=3.3e-13 Score=100.56 Aligned_cols=112 Identities=14% Similarity=0.170 Sum_probs=104.5
Q ss_pred ChHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCChHHHHHHHHHHHhhhcccccccccchhhhhHHHhcCCHHHHHHHH
Q 012143 199 NCDCIGNLGIAYFQSGDMEQSAKCFQDLILKDQNHPAALINYAALLLCKYGSVLAGAGANTGEGACLDQASAVNVAKECL 278 (470)
Q Consensus 199 ~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~ 278 (470)
.+..++.+|.++...|++++|+..|++++..+|.++..+..+|.++. ..|++++|+..+
T Consensus 3 ~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~a~~~~---------------------~~~~~~~A~~~~ 61 (118)
T 1elw_A 3 QVNELKEKGNKALSVGNIDDALQCYSEAIKLDPHNHVLYSNRSAAYA---------------------KKGDYQKAYEDG 61 (118)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHH---------------------HHTCHHHHHHHH
T ss_pred hHHHHHHHHHHHHHcccHHHHHHHHHHHHHHCCCcHHHHHHHHHHHH---------------------hhccHHHHHHHH
Confidence 45788999999999999999999999999999999999999988887 699999999999
Q ss_pred HHHHhcCCCCHHHHHHHHHHHHHcCChhHHHHHHHHHHhcCCCcccHHHHHHH
Q 012143 279 LAALKADPKAAHIWANLANAYYLTGDHRSSGKCLEKAAKLEPNCMSTRYAVAV 331 (470)
Q Consensus 279 ~~~~~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~p~~~~~~~~l~~ 331 (470)
++++...|+++.++..+|.++...|++++|+..++++++.+|+++..+..++.
T Consensus 62 ~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~ 114 (118)
T 1elw_A 62 CKTVDLKPDWGKGYSRKAAALEFLNRFEEAKRTYEEGLKHEANNPQLKEGLQN 114 (118)
T ss_dssp HHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCTTCHHHHHHHHH
T ss_pred HHHHHhCcccHHHHHHHHHHHHHHhhHHHHHHHHHHHHHcCCCCHHHHHHHHH
Confidence 99999999999999999999999999999999999999999998877766543
|
| >2if4_A ATFKBP42; FKBP-like, alpha-beta, TPR-like, alpha, signaling protein; 2.85A {Arabidopsis thaliana} | Back alignment and structure |
|---|
Probab=99.54 E-value=1.3e-14 Score=129.88 Aligned_cols=161 Identities=15% Similarity=0.064 Sum_probs=101.1
Q ss_pred hCCCChhHHHHHHHHHHHhCChhHHHHHHHHHHHHHhhhhcccchhhhHHHHHHhhhccccccccCCCccccccCcccHH
Q 012143 70 KMPKNAHAHFLLGLMYQRLGQPLKAVSSYEKAEEILLRCEADIARPELLSLVQIHHAQCLLPESSGDNSLDKELEPEELE 149 (470)
Q Consensus 70 ~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 149 (470)
..|..+..+..+|..++..|++++|+..|++++...|.... +...+++.
T Consensus 174 ~~~~~a~~~~~~g~~~~~~g~~~~A~~~y~~Al~~~p~~~~-------------------------------~~~~~~~~ 222 (338)
T 2if4_A 174 ERIGAADRRKMDGNSLFKEEKLEEAMQQYEMAIAYMGDDFM-------------------------------FQLYGKYQ 222 (338)
T ss_dssp HHHHHHHHHHHHHHHTCSSSCCHHHHHHHHHHHHHSCHHHH-------------------------------HTCCHHHH
T ss_pred HHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHhccchh-------------------------------hhhcccHH
Confidence 34556788999999999999999999999999998765310 11334556
Q ss_pred HHHHHHHHhhhcCccchHHHHHHHHHHHHcCChHHHHHHHHHHhhcCCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHhh
Q 012143 150 EILSKLKESMQSDTRQAVVWNTLGLILLKSGRLQSSISVLSSLLAVDPNNCDCIGNLGIAYFQSGDMEQSAKCFQDLILK 229 (470)
Q Consensus 150 ~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~ 229 (470)
++...+. ..+++++|.++..+|++++|+.+|+++++++|++..+++.+|.++..+|++++|+..|++++++
T Consensus 223 ~~~~~l~---------~~~~~nla~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~lg~a~~~~g~~~~A~~~l~~al~l 293 (338)
T 2if4_A 223 DMALAVK---------NPCHLNIAACLIKLKRYDEAIGHCNIVLTEEEKNPKALFRRGKAKAELGQMDSARDDFRKAQKY 293 (338)
T ss_dssp HHHHHHH---------THHHHHHHHHHHTTTCCHHHHHHHHHHHHHCTTCHHHHHHHHHHHHTTTCHHHHHHHHHHTTC-
T ss_pred HHHHHHH---------HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence 6554432 3488999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCChHHHHHHHHHHHhhhcccccccccchhhhhHHHhcCCHHHHHHHHHHHHhcCCCCHH
Q 012143 230 DQNHPAALINYAALLLCKYGSVLAGAGANTGEGACLDQASAVNVAKECLLAALKADPKAAH 290 (470)
Q Consensus 230 ~p~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~p~~~~ 290 (470)
+|++..++..++.+... ..+..+++...|.+++...|+++.
T Consensus 294 ~p~~~~a~~~L~~l~~~--------------------~~~~~~~a~~~~~~~l~~~p~~~~ 334 (338)
T 2if4_A 294 APDDKAIRRELRALAEQ--------------------EKALYQKQKEMYKGIFKGKDEGGA 334 (338)
T ss_dssp -------------------------------------------------------------
T ss_pred CCCCHHHHHHHHHHHHH--------------------HHHHHHHHHHHHHHhhCCCCCCCC
Confidence 99999999888877543 467788899999999999887653
|
| >1zu2_A Mitochondrial import receptor subunit TOM20-3; TPR, tetratricopeptide repeat like, TPR-like, transport protein; NMR {Arabidopsis thaliana} SCOP: a.118.8.1 | Back alignment and structure |
|---|
Probab=99.54 E-value=4.5e-14 Score=107.62 Aligned_cols=103 Identities=13% Similarity=0.144 Sum_probs=93.4
Q ss_pred hhhhcChhhHHHHHHHHHHhCCCChhHHHHHHHHHHHhCChhHHHHHHHHHHHHHhhhhcccchhhhHHHHHHhhhcccc
Q 012143 51 SSREEKVSSLKTGLVHVARKMPKNAHAHFLLGLMYQRLGQPLKAVSSYEKAEEILLRCEADIARPELLSLVQIHHAQCLL 130 (470)
Q Consensus 51 ~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 130 (470)
..+.+.+++|++.++++++.+|+++++|+.+|.++...++++.+......
T Consensus 12 ~~r~~~feeA~~~~~~Ai~l~P~~aea~~n~G~~l~~l~~~~~g~~al~~------------------------------ 61 (158)
T 1zu2_A 12 FDRILLFEQIRQDAENTYKSNPLDADNLTRWGGVLLELSQFHSISDAKQM------------------------------ 61 (158)
T ss_dssp HHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHHHSCHHHHHHH------------------------------
T ss_pred HHHHhHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHhcccchhhhhHhH------------------------------
Confidence 56678899999999999999999999999999999999998877764321
Q ss_pred ccccCCCccccccCcccHHHHHHHHHHhhhcCccchHHHHHHHHHHHHcC-----------ChHHHHHHHHHHhhcCCCC
Q 012143 131 PESSGDNSLDKELEPEELEEILSKLKESMQSDTRQAVVWNTLGLILLKSG-----------RLQSSISVLSSLLAVDPNN 199 (470)
Q Consensus 131 ~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~~-----------~~~~A~~~~~~a~~~~~~~ 199 (470)
+++|+..|+++++++|+++.+|+++|.+|..+| ++++|+.+|+++++++|++
T Consensus 62 -----------------~~eAi~~le~AL~ldP~~~~A~~~LG~ay~~lg~l~P~~~~a~g~~~eA~~~~~kAl~l~P~~ 124 (158)
T 1zu2_A 62 -----------------IQEAITKFEEALLIDPKKDEAVWCIGNAYTSFAFLTPDETEAKHNFDLATQFFQQAVDEQPDN 124 (158)
T ss_dssp -----------------HHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHCTTC
T ss_pred -----------------HHHHHHHHHHHHHhCcCcHHHHHHHHHHHHHhcccCcchhhhhccHHHHHHHHHHHHHhCCCC
Confidence 389999999999999999999999999999885 8999999999999999997
Q ss_pred h
Q 012143 200 C 200 (470)
Q Consensus 200 ~ 200 (470)
.
T Consensus 125 ~ 125 (158)
T 1zu2_A 125 T 125 (158)
T ss_dssp H
T ss_pred H
Confidence 4
|
| >3rkv_A Putative peptidylprolyl isomerase; structural genomics, APC102156, PSI-biology, midwest center structural genomics, MCSG; 2.41A {Caenorhabditis elegans} | Back alignment and structure |
|---|
Probab=99.53 E-value=1.7e-13 Score=108.81 Aligned_cols=110 Identities=14% Similarity=0.166 Sum_probs=97.4
Q ss_pred hHHHHHHHHHHHHcCCHHHHHHHHHHHHhh------------------CCCChHHHHHHHHHHHhhhcccccccccchhh
Q 012143 200 CDCIGNLGIAYFQSGDMEQSAKCFQDLILK------------------DQNHPAALINYAALLLCKYGSVLAGAGANTGE 261 (470)
Q Consensus 200 ~~~~~~la~~~~~~g~~~~A~~~~~~~l~~------------------~p~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~ 261 (470)
...+...|..++..|++++|+..|.+++.. +|.+..++.++|.++.
T Consensus 11 a~~~~~~G~~~~~~~~~~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~---------------- 74 (162)
T 3rkv_A 11 VEALRQKGNELFVQKDYKEAIDAYRDALTRLDTLILREKPGEPEWVELDRKNIPLYANMSQCYL---------------- 74 (162)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHTSCTTSHHHHHHHHTHHHHHHHHHHHHH----------------
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcccCCCCHHHHHHHHHHHHHHHHHHHHHHH----------------
Confidence 567899999999999999999999999998 5555566666666665
Q ss_pred hhHHHhcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCChhHHHHHHHHHHhcCCCcc-cHHHHHH
Q 012143 262 GACLDQASAVNVAKECLLAALKADPKAAHIWANLANAYYLTGDHRSSGKCLEKAAKLEPNCM-STRYAVA 330 (470)
Q Consensus 262 ~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~p~~~-~~~~~l~ 330 (470)
..|++++|+..+++++.++|+++.+++.+|.++..+|++++|+..|++++.++|++. .....+.
T Consensus 75 -----~~~~~~~A~~~~~~al~~~p~~~~a~~~~g~~~~~~g~~~~A~~~~~~al~l~p~~~~~~~~~l~ 139 (162)
T 3rkv_A 75 -----NIGDLHEAEETSSEVLKREETNEKALFRRAKARIAAWKLDEAEEDLKLLLRNHPAAASVVAREMK 139 (162)
T ss_dssp -----HHTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCGGGHHHHHHHHH
T ss_pred -----hcCcHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHhcHHHHHHHHHHHHhcCCCCHHHHHHHHH
Confidence 899999999999999999999999999999999999999999999999999999987 4344333
|
| >1na0_A Designed protein CTPR3; de novo protein; HET: IPT; 1.60A {Unidentified} SCOP: k.38.1.1 PDB: 2wqh_A 3kd7_A | Back alignment and structure |
|---|
Probab=99.53 E-value=6.1e-13 Score=100.25 Aligned_cols=116 Identities=31% Similarity=0.499 Sum_probs=105.6
Q ss_pred CCCC-hHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCChHHHHHHHHHHHhhhcccccccccchhhhhHHHhcCCHHHH
Q 012143 196 DPNN-CDCIGNLGIAYFQSGDMEQSAKCFQDLILKDQNHPAALINYAALLLCKYGSVLAGAGANTGEGACLDQASAVNVA 274 (470)
Q Consensus 196 ~~~~-~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A 274 (470)
+|.. ..++..+|.++...|++++|+..+++++...|.+...+..++.++. ..|++++|
T Consensus 4 ~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~---------------------~~~~~~~A 62 (125)
T 1na0_A 4 DPGNSAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPNNAEAWYNLGNAYY---------------------KQGDYDEA 62 (125)
T ss_dssp ---CHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHH---------------------HTTCHHHH
T ss_pred CccccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCcCcHHHHHHHHHHHH---------------------HhCCHHHH
Confidence 4555 7889999999999999999999999999999999999888888877 79999999
Q ss_pred HHHHHHHHhcCCCCHHHHHHHHHHHHHcCChhHHHHHHHHHHhcCCCcccHHHHHHHH
Q 012143 275 KECLLAALKADPKAAHIWANLANAYYLTGDHRSSGKCLEKAAKLEPNCMSTRYAVAVS 332 (470)
Q Consensus 275 ~~~~~~~~~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~p~~~~~~~~l~~~ 332 (470)
+.++++++...|.++.++..+|.++...|++++|+.++++++..+|++..++..++..
T Consensus 63 ~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~ 120 (125)
T 1na0_A 63 IEYYQKALELDPNNAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPNNAEAKQNLGNA 120 (125)
T ss_dssp HHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHH
T ss_pred HHHHHHHHHhCCccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCcHHHHHHHHHH
Confidence 9999999999999999999999999999999999999999999999998887776653
|
| >1elr_A TPR2A-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, protein binding, chaperone; 1.90A {Homo sapiens} SCOP: a.118.8.1 PDB: 3esk_A 3fwv_A | Back alignment and structure |
|---|
Probab=99.53 E-value=1.5e-13 Score=104.69 Aligned_cols=119 Identities=16% Similarity=0.190 Sum_probs=103.4
Q ss_pred ccchHHHHHHHHHHHHcCChHHHHHHHHHHhhcCCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCC-------hH
Q 012143 163 TRQAVVWNTLGLILLKSGRLQSSISVLSSLLAVDPNNCDCIGNLGIAYFQSGDMEQSAKCFQDLILKDQNH-------PA 235 (470)
Q Consensus 163 p~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~-------~~ 235 (470)
|..+..+..+|.++...|++++|+..|++++..+|.++.++..+|.++...|++++|+..+++++...|.+ ..
T Consensus 1 ~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~ 80 (131)
T 1elr_A 1 GKQALKEKELGNDAYKKKDFDTALKHYDKAKELDPTNMTYITNQAAVYFEKGDYNKCRELCEKAIEVGRENREDYRQIAK 80 (131)
T ss_dssp CHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHSTTCHHHHHH
T ss_pred ChHHHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCCccHHHHHHHHHHHHHhccHHHHHHHHHHHHhhccccchhHHHHHH
Confidence 34567899999999999999999999999999999999999999999999999999999999999998876 55
Q ss_pred HHHHHHHHHHhhhcccccccccchhhhhHHHhcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcC
Q 012143 236 ALINYAALLLCKYGSVLAGAGANTGEGACLDQASAVNVAKECLLAALKADPKAAHIWANLANAYYLTG 303 (470)
Q Consensus 236 ~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~la~~~~~~g 303 (470)
++..+|.++. ..|++++|+.+|++++...| ++..+..++.+....+
T Consensus 81 ~~~~la~~~~---------------------~~~~~~~A~~~~~~~~~~~~-~~~~~~~l~~~~~~~~ 126 (131)
T 1elr_A 81 AYARIGNSYF---------------------KEEKYKDAIHFYNKSLAEHR-TPDVLKKCQQAEKILK 126 (131)
T ss_dssp HHHHHHHHHH---------------------HTTCHHHHHHHHHHHHHHCC-CHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHH---------------------HhccHHHHHHHHHHHHHhCC-CHHHHHHHHHHHHHHH
Confidence 5555555555 78999999999999999888 5888888887766544
|
| >4b4t_Q 26S proteasome regulatory subunit RPN6; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=99.51 E-value=9.9e-13 Score=122.66 Aligned_cols=140 Identities=12% Similarity=-0.005 Sum_probs=110.1
Q ss_pred hHHHHHHHHHHHHcCChHHHHHHHHHHhhcCCCCh-----------------HHHHHHHHHHHHcCCHHHHHHHHHHHHh
Q 012143 166 AVVWNTLGLILLKSGRLQSSISVLSSLLAVDPNNC-----------------DCIGNLGIAYFQSGDMEQSAKCFQDLIL 228 (470)
Q Consensus 166 ~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~-----------------~~~~~la~~~~~~g~~~~A~~~~~~~l~ 228 (470)
|.+....|..+...|+|++|++.|.++++..|... .++..+|.+|...|++++|++.+.+++.
T Consensus 4 p~~~l~~a~~l~~~~~y~eA~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~al~~l~~~y~~~~~~~~a~~~~~~~~~ 83 (434)
T 4b4t_Q 4 PGSKLEEARRLVNEKQYNEAEQVYLSLLDKDSSQSSAAAGASVDDKRRNEQETSILELGQLYVTMGAKDKLREFIPHSTE 83 (434)
T ss_dssp TTHHHHHHHHHHHHTCHHHHHHHHHHHHHSCCCSSSBSSSSSBCSHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHTHH
T ss_pred hHHHHHHHHHHHHCCCHHHHHHHHHHHHhhCcccchhHHHHHHHHHHhhhHHHHHHHHHHHHHHCCCHHHHHHHHHHHHH
Confidence 45667788889999999999999999999887653 3588999999999999999999999998
Q ss_pred hCCCChHHHHHHHHHHHhhhcccccccccchhhhhHHHhcCCHHHHHHHHHHHHhcCC------CCHHHHHHHHHHHHHc
Q 012143 229 KDQNHPAALINYAALLLCKYGSVLAGAGANTGEGACLDQASAVNVAKECLLAALKADP------KAAHIWANLANAYYLT 302 (470)
Q Consensus 229 ~~p~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~p------~~~~~~~~la~~~~~~ 302 (470)
..+.......... +. ..+|.++...|++++|+.++++++...+ ....++..+|.++...
T Consensus 84 ~~~~~~~~~~~~~-~~--------------~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~ 148 (434)
T 4b4t_Q 84 YMMQFAKSKTVKV-LK--------------TLIEKFEQVPDSLDDQIFVCEKSIEFAKREKRVFLKHSLSIKLATLHYQK 148 (434)
T ss_dssp HHHTSCHHHHHHH-HH--------------HHHHHHCSCCSCHHHHHHHHHHHHHHHHHSSCCSSHHHHHHHHHHHHHHH
T ss_pred HHHHccchHHHHH-HH--------------HHHHHHHhCCCCHHHHHHHHHHHHHHHHHhCccHHHHHHHHHHHHHHHHc
Confidence 7766544322111 11 1134455578999999999999887532 3467889999999999
Q ss_pred CChhHHHHHHHHHHhcCC
Q 012143 303 GDHRSSGKCLEKAAKLEP 320 (470)
Q Consensus 303 g~~~~A~~~~~~a~~~~p 320 (470)
|++++|...+++++....
T Consensus 149 g~~~~A~~~l~~~~~~~~ 166 (434)
T 4b4t_Q 149 KQYKDSLALINDLLREFK 166 (434)
T ss_dssp TCHHHHHHHHHHHHHHHT
T ss_pred cChHHHHHHHHHHHHHHH
Confidence 999999999999876543
|
| >2dba_A Smooth muscle cell associated protein-1, isoform 2; tetratricopeptide repeat, structural genomics, NPPSFA; NMR {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.51 E-value=4.3e-13 Score=104.58 Aligned_cols=116 Identities=16% Similarity=0.132 Sum_probs=105.7
Q ss_pred hcCCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCC---hHHHHHHHHHHHhhhcccccccccchhhhhHHHhcCC
Q 012143 194 AVDPNNCDCIGNLGIAYFQSGDMEQSAKCFQDLILKDQNH---PAALINYAALLLCKYGSVLAGAGANTGEGACLDQASA 270 (470)
Q Consensus 194 ~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~---~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 270 (470)
..+|.+...+..+|..+...|++++|+..|++++..+|++ ...+..++.++. ..|+
T Consensus 22 ~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~a~~~~---------------------~~~~ 80 (148)
T 2dba_A 22 TPGASSVEQLRKEGNELFKCGDYGGALAAYTQALGLDATPQDQAVLHRNRAACHL---------------------KLED 80 (148)
T ss_dssp CTTCCCHHHHHHHHHHHHTTTCHHHHHHHHHHHHTSCCCHHHHHHHHHHHHHHHH---------------------HTTC
T ss_pred ccchHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHcccchHHHHHHHHHHHHHH---------------------HHcc
Confidence 3467788999999999999999999999999999999987 677777777766 7999
Q ss_pred HHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCChhHHHHHHHHHHhcCCCcccHHHHHH
Q 012143 271 VNVAKECLLAALKADPKAAHIWANLANAYYLTGDHRSSGKCLEKAAKLEPNCMSTRYAVA 330 (470)
Q Consensus 271 ~~~A~~~~~~~~~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~p~~~~~~~~l~ 330 (470)
+++|+..+++++..+|+++.++..+|.++...|++++|+.+|++++..+|++...+..+.
T Consensus 81 ~~~A~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~ 140 (148)
T 2dba_A 81 YDKAETEASKAIEKDGGDVKALYRRSQALEKLGRLDQAVLDLQRCVSLEPKNKVFQEALR 140 (148)
T ss_dssp HHHHHHHHHHHHHHTSCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCSSCHHHHHHHH
T ss_pred HHHHHHHHHHHHhhCccCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCcHHHHHHHH
Confidence 999999999999999999999999999999999999999999999999999887666543
|
| >3k9i_A BH0479 protein; putative protein binding protein, structural genomics, joint for structural genomics, JCSG; 2.71A {Bacillus halodurans} | Back alignment and structure |
|---|
Probab=99.51 E-value=5.6e-14 Score=104.74 Aligned_cols=94 Identities=14% Similarity=0.139 Sum_probs=86.8
Q ss_pred cccHHHHHHHHHHhhhc---CccchHHHHHHHHHHHHcCChHHHHHHHHHHhhcCCCChHHHHHHHHHHHHcCCHHHHHH
Q 012143 145 PEELEEILSKLKESMQS---DTRQAVVWNTLGLILLKSGRLQSSISVLSSLLAVDPNNCDCIGNLGIAYFQSGDMEQSAK 221 (470)
Q Consensus 145 ~~~~~~A~~~~~~~~~~---~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~la~~~~~~g~~~~A~~ 221 (470)
.|++++|+..|++++.. +|+++.++..+|.++..+|++++|+.+|+++++.+|+++.+++.+|.++...|++++|+.
T Consensus 3 ~g~~~~A~~~~~~al~~~~~~p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~ 82 (117)
T 3k9i_A 3 LGLEAQAVPYYEKAIASGLQGKDLAECYLGLGSTFRTLGEYRKAEAVLANGVKQFPNHQALRVFYAMVLYNLGRYEQGVE 82 (117)
T ss_dssp ----CCCHHHHHHHHSSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHH
T ss_pred CCcHHHHHHHHHHHHHcCCCCccHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCchHHHHHHHHHHHHcCCHHHHHH
Confidence 57889999999999999 699999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHhhCCCChHHHH
Q 012143 222 CFQDLILKDQNHPAALI 238 (470)
Q Consensus 222 ~~~~~l~~~p~~~~~~~ 238 (470)
.+++++...|+++....
T Consensus 83 ~~~~al~~~p~~~~~~~ 99 (117)
T 3k9i_A 83 LLLKIIAETSDDETIQS 99 (117)
T ss_dssp HHHHHHHHHCCCHHHHH
T ss_pred HHHHHHHhCCCcHHHHH
Confidence 99999999999987654
|
| >3gw4_A Uncharacterized protein; structural genomics, PSI-2, protein structure initiative, no structural genomics consortium, NESG, DRR162B; 2.49A {Deinococcus radiodurans R1} | Back alignment and structure |
|---|
Probab=99.50 E-value=1.4e-12 Score=107.83 Aligned_cols=124 Identities=18% Similarity=0.156 Sum_probs=96.4
Q ss_pred HHHcCChHHHHHHHHHHhhcCCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC------CCChHHHHHHHHHHHhhhc
Q 012143 176 LLKSGRLQSSISVLSSLLAVDPNNCDCIGNLGIAYFQSGDMEQSAKCFQDLILKD------QNHPAALINYAALLLCKYG 249 (470)
Q Consensus 176 ~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~------p~~~~~~~~l~~~~~~~~~ 249 (470)
.+..|++++|...++......+....++..+|.++...|++++|+..+++++.+. |....++..+|.+
T Consensus 2 ~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~------ 75 (203)
T 3gw4_A 2 AFEAHDYALAERQAQALLAHPATASGARFMLGYVYAFMDRFDEARASFQALQQQAQKSGDHTAEHRALHQVGMV------ 75 (203)
T ss_dssp -----CHHHHHHHHHHHHTSTTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHH------
T ss_pred ccccccHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHH------
Confidence 3568999999996665555444678899999999999999999999999999843 2333344444444
Q ss_pred ccccccccchhhhhHHHhcCCHHHHHHHHHHHHhc---CCC----CHHHHHHHHHHHHHcCChhHHHHHHHHHHhcCC
Q 012143 250 SVLAGAGANTGEGACLDQASAVNVAKECLLAALKA---DPK----AAHIWANLANAYYLTGDHRSSGKCLEKAAKLEP 320 (470)
Q Consensus 250 ~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~---~p~----~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~p 320 (470)
+...|++++|+.++++++.. .++ ...++..+|.++...|++++|+.++++++...+
T Consensus 76 ---------------~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~ 138 (203)
T 3gw4_A 76 ---------------ERMAGNWDAARRCFLEERELLASLPEDPLAASANAYEVATVALHFGDLAGARQEYEKSLVYAQ 138 (203)
T ss_dssp ---------------HHHTTCHHHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHH
T ss_pred ---------------HHHcCCHHHHHHHHHHHHHHHHHcCccHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHH
Confidence 45899999999999999988 442 356789999999999999999999999987643
|
| >1ihg_A Cyclophilin 40; ppiase immunophilin tetratricopeptide, isomerase; 1.80A {Bos taurus} SCOP: a.118.8.1 b.62.1.1 PDB: 1iip_A | Back alignment and structure |
|---|
Probab=99.50 E-value=5.3e-13 Score=120.57 Aligned_cols=130 Identities=11% Similarity=0.056 Sum_probs=114.8
Q ss_pred hhHHHHHHHHHHHhCChhHHHHHHHHHHHHHhhhhcccchhhhHHHHHHhhhccccccccCCCccccccCcccHHHHHHH
Q 012143 75 AHAHFLLGLMYQRLGQPLKAVSSYEKAEEILLRCEADIARPELLSLVQIHHAQCLLPESSGDNSLDKELEPEELEEILSK 154 (470)
Q Consensus 75 ~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~ 154 (470)
+..+..+|..+...|++++|+..|+++++..+... ....
T Consensus 223 a~~~~~~g~~~~~~g~~~~Ai~~y~kAl~~~~~~~-----------------------------------------~~~~ 261 (370)
T 1ihg_A 223 SEDLKNIGNTFFKSQNWEMAIKKYTKVLRYVEGSR-----------------------------------------AAAE 261 (370)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHH-----------------------------------------HHSC
T ss_pred HHHHHHHHHHHHHhcCHHHHHHHHHHHHHHhhcCc-----------------------------------------cccC
Confidence 56789999999999999999999999999754421 0111
Q ss_pred HHHhhhcCccchHHHHHHHHHHHHcCChHHHHHHHHHHhhcCCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCh
Q 012143 155 LKESMQSDTRQAVVWNTLGLILLKSGRLQSSISVLSSLLAVDPNNCDCIGNLGIAYFQSGDMEQSAKCFQDLILKDQNHP 234 (470)
Q Consensus 155 ~~~~~~~~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~ 234 (470)
.......+|.++.++.++|.++..+|++++|+.+++++++++|+++.+++.+|.+|..+|++++|+..|+++++++|++.
T Consensus 262 ~~~~~~~~~~~~~~~~nla~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~g~~~eA~~~l~~Al~l~P~~~ 341 (370)
T 1ihg_A 262 DADGAKLQPVALSCVLNIGACKLKMSDWQGAVDSCLEALEIDPSNTKALYRRAQGWQGLKEYDQALADLKKAQEIAPEDK 341 (370)
T ss_dssp HHHHGGGHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCH
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHhccCHHHHHHHHHHHHHhCchhHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCH
Confidence 33445567888999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHH
Q 012143 235 AALINYAALLL 245 (470)
Q Consensus 235 ~~~~~l~~~~~ 245 (470)
.++..++.++.
T Consensus 342 ~~~~~l~~~~~ 352 (370)
T 1ihg_A 342 AIQAELLKVKQ 352 (370)
T ss_dssp HHHHHHHHHHH
T ss_pred HHHHHHHHHHH
Confidence 99998888876
|
| >3k9i_A BH0479 protein; putative protein binding protein, structural genomics, joint for structural genomics, JCSG; 2.71A {Bacillus halodurans} | Back alignment and structure |
|---|
Probab=99.49 E-value=7.9e-14 Score=103.89 Aligned_cols=104 Identities=15% Similarity=0.216 Sum_probs=81.7
Q ss_pred HcCChHHHHHHHHHHhhc---CCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCChHHHHHHHHHHHhhhcccccc
Q 012143 178 KSGRLQSSISVLSSLLAV---DPNNCDCIGNLGIAYFQSGDMEQSAKCFQDLILKDQNHPAALINYAALLLCKYGSVLAG 254 (470)
Q Consensus 178 ~~~~~~~A~~~~~~a~~~---~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~l~~~~~~~~~~~~~~ 254 (470)
.+|++++|+..|+++++. +|+++.++..+|.++..+|++++|+..|+++++.+|+++.++..+|.++.
T Consensus 2 ~~g~~~~A~~~~~~al~~~~~~p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~--------- 72 (117)
T 3k9i_A 2 VLGLEAQAVPYYEKAIASGLQGKDLAECYLGLGSTFRTLGEYRKAEAVLANGVKQFPNHQALRVFYAMVLY--------- 72 (117)
T ss_dssp -----CCCHHHHHHHHSSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHH---------
T ss_pred CCCcHHHHHHHHHHHHHcCCCCccHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCchHHHHHHHHHHH---------
Confidence 468888999999999988 58888889999999999999999999999999999998888888888777
Q ss_pred cccchhhhhHHHhcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHc
Q 012143 255 AGANTGEGACLDQASAVNVAKECLLAALKADPKAAHIWANLANAYYLT 302 (470)
Q Consensus 255 ~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~la~~~~~~ 302 (470)
..|++++|+..+++++...|+++.+......+....
T Consensus 73 ------------~~g~~~~A~~~~~~al~~~p~~~~~~~~~~ai~~~~ 108 (117)
T 3k9i_A 73 ------------NLGRYEQGVELLLKIIAETSDDETIQSYKQAILFYA 108 (117)
T ss_dssp ------------HHTCHHHHHHHHHHHHHHHCCCHHHHHTHHHHHHHT
T ss_pred ------------HcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHH
Confidence 688899999999999988888877655444333333
|
| >2xev_A YBGF; tetratricopeptide, alpha-helical, metal binding; 1.57A {Xanthomonas campestris} | Back alignment and structure |
|---|
Probab=99.49 E-value=8e-13 Score=100.40 Aligned_cols=107 Identities=16% Similarity=0.171 Sum_probs=98.0
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCh---HHHHHHHHHHHhhhcccccccccchhhhhHHHhcCCHHHHHHH
Q 012143 201 DCIGNLGIAYFQSGDMEQSAKCFQDLILKDQNHP---AALINYAALLLCKYGSVLAGAGANTGEGACLDQASAVNVAKEC 277 (470)
Q Consensus 201 ~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~---~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~ 277 (470)
.+++.+|.++...|++++|+..|++++..+|+++ .+++.+|.++. ..|++++|+..
T Consensus 3 ~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~~~~lg~~~~---------------------~~~~~~~A~~~ 61 (129)
T 2xev_A 3 RTAYNVAFDALKNGKYDDASQLFLSFLELYPNGVYTPNALYWLGESYY---------------------ATRNFQLAEAQ 61 (129)
T ss_dssp CCHHHHHHHHHHTTCHHHHHHHHHHHHHHCSSSTTHHHHHHHHHHHHH---------------------HTTCHHHHHHH
T ss_pred HHHHHHHHHHHHhCCHHHHHHHHHHHHHHCCCCcccHHHHHHHHHHHH---------------------HhccHHHHHHH
Confidence 4578899999999999999999999999999988 68888887776 79999999999
Q ss_pred HHHHHhcCCCC---HHHHHHHHHHHHHcCChhHHHHHHHHHHhcCCCcccHHHH
Q 012143 278 LLAALKADPKA---AHIWANLANAYYLTGDHRSSGKCLEKAAKLEPNCMSTRYA 328 (470)
Q Consensus 278 ~~~~~~~~p~~---~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~p~~~~~~~~ 328 (470)
|++++...|++ +.+++.+|.++...|++++|+..|++++...|++..+...
T Consensus 62 ~~~~~~~~p~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~a 115 (129)
T 2xev_A 62 FRDLVSRYPTHDKAAGGLLKLGLSQYGEGKNTEAQQTLQQVATQYPGSDAARVA 115 (129)
T ss_dssp HHHHHHHCTTSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTSHHHHHH
T ss_pred HHHHHHHCCCCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCChHHHHH
Confidence 99999999999 8899999999999999999999999999999997765443
|
| >1ihg_A Cyclophilin 40; ppiase immunophilin tetratricopeptide, isomerase; 1.80A {Bos taurus} SCOP: a.118.8.1 b.62.1.1 PDB: 1iip_A | Back alignment and structure |
|---|
Probab=99.49 E-value=3.4e-13 Score=121.88 Aligned_cols=125 Identities=18% Similarity=0.196 Sum_probs=113.6
Q ss_pred hHHHHHHHHHHHHcCChHHHHHHHHHHhh----------------cCCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHhh
Q 012143 166 AVVWNTLGLILLKSGRLQSSISVLSSLLA----------------VDPNNCDCIGNLGIAYFQSGDMEQSAKCFQDLILK 229 (470)
Q Consensus 166 ~~~~~~l~~~~~~~~~~~~A~~~~~~a~~----------------~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~ 229 (470)
+..+..+|..+...|++++|+..|+++++ .+|.+..++.++|.++..+|++++|+..+++++++
T Consensus 223 a~~~~~~g~~~~~~g~~~~Ai~~y~kAl~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~~g~~~~A~~~~~~al~~ 302 (370)
T 1ihg_A 223 SEDLKNIGNTFFKSQNWEMAIKKYTKVLRYVEGSRAAAEDADGAKLQPVALSCVLNIGACKLKMSDWQGAVDSCLEALEI 302 (370)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHHSCHHHHGGGHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHHhcCHHHHHHHHHHHHHHhhcCccccChHHHHHHHHHHHHHHHHHHHHHHhccCHHHHHHHHHHHHHh
Confidence 56788999999999999999999999998 77778889999999999999999999999999999
Q ss_pred CCCChHHHHHHHHHHHhhhcccccccccchhhhhHHHhcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCChhHHH
Q 012143 230 DQNHPAALINYAALLLCKYGSVLAGAGANTGEGACLDQASAVNVAKECLLAALKADPKAAHIWANLANAYYLTGDHRSSG 309 (470)
Q Consensus 230 ~p~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~la~~~~~~g~~~~A~ 309 (470)
+|++..+++.+|.++. ..|++++|+..|+++++++|++..++..++.++...++++++.
T Consensus 303 ~p~~~~a~~~lg~~~~---------------------~~g~~~eA~~~l~~Al~l~P~~~~~~~~l~~~~~~~~~~~~a~ 361 (370)
T 1ihg_A 303 DPSNTKALYRRAQGWQ---------------------GLKEYDQALADLKKAQEIAPEDKAIQAELLKVKQKIKAQKDKE 361 (370)
T ss_dssp CTTCHHHHHHHHHHHH---------------------HTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHHHHHHH
T ss_pred CchhHHHHHHHHHHHH---------------------HccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHH
Confidence 9999999998888887 6899999999999999999999999999999999988888775
Q ss_pred HH
Q 012143 310 KC 311 (470)
Q Consensus 310 ~~ 311 (470)
..
T Consensus 362 k~ 363 (370)
T 1ihg_A 362 KA 363 (370)
T ss_dssp HC
T ss_pred HH
Confidence 43
|
| >2uy1_A Cleavage stimulation factor 77; RNA-binding protein; 2.0A {Encephalitozoon cuniculi} PDB: 2uy1_B | Back alignment and structure |
|---|
Probab=99.48 E-value=5.5e-11 Score=111.55 Aligned_cols=344 Identities=7% Similarity=-0.066 Sum_probs=204.9
Q ss_pred hhc-ChhhHHHHHHHHHHhCCCChhHHHHHHHHHHHhCChhHHHHHHHHHHHHHhhhhcccchhhhHHHHHHhhhccccc
Q 012143 53 REE-KVSSLKTGLVHVARKMPKNAHAHFLLGLMYQRLGQPLKAVSSYEKAEEILLRCEADIARPELLSLVQIHHAQCLLP 131 (470)
Q Consensus 53 ~~~-~~~~A~~~~~~~l~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 131 (470)
..| ++..|...|++++...|. |+++.+...|++++...|+.+ .|...+...
T Consensus 6 ~~~~~i~~aR~vyer~l~~~P~---------------~~~e~~~~iferal~~~ps~~-------------LW~~Y~~f~ 57 (493)
T 2uy1_A 6 KMGVELSSPSAIMEHARRLYMS---------------KDYRSLESLFGRCLKKSYNLD-------------LWMLYIEYV 57 (493)
T ss_dssp ------CCHHHHHHHHHHHHHT---------------TCHHHHHHHHHHHSTTCCCHH-------------HHHHHHHHH
T ss_pred HcCcchHHHHHHHHHHHHHCCC---------------CCHHHHHHHHHHHhccCCCHH-------------HHHHHHHHH
Confidence 345 488888888888888777 889999999999988655321 111111110
Q ss_pred cccCCCccccccCcccHHHHHHHHHHhhhc---CccchHHHHHHHHHHH----HcCChHHHHHHHHHHhhcCCCChHH-H
Q 012143 132 ESSGDNSLDKELEPEELEEILSKLKESMQS---DTRQAVVWNTLGLILL----KSGRLQSSISVLSSLLAVDPNNCDC-I 203 (470)
Q Consensus 132 ~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~---~p~~~~~~~~l~~~~~----~~~~~~~A~~~~~~a~~~~~~~~~~-~ 203 (470)
...+. ..+.....|+.++.. +|.+..+|......+. .+|+.+.+...|++++...+....- |
T Consensus 58 ~~~~~----------~~~~i~~~fe~al~~vg~d~~s~~iW~~Yi~f~~~~~~~~~~~~~vR~iy~rAL~~P~~~~~~lw 127 (493)
T 2uy1_A 58 RKVSQ----------KKFKLYEVYEFTLGQFENYWDSYGLYKEYIEEEGKIEDEQTRIEKIRNGYMRALQTPMGSLSELW 127 (493)
T ss_dssp HHHC--------------CTHHHHHHHHHHSTTCTTCHHHHHHHHHHTSSCSSHHHHHHHHHHHHHHHHTSCCTTHHHHH
T ss_pred HHhCc----------hHHHHHHHHHHHHHHcCCCcccHHHHHHHHHHHHhchhhhHHHHHHHHHHHHHHhChhhhHHHHH
Confidence 00110 124456677777763 6777788887776654 3467888899999999853333322 2
Q ss_pred HHHHHHH-------------HHcCCHHHHHHHHHHHHhhCCC-ChHHHHHHHHHHHhhhcccccccccchhhhhHHHhcC
Q 012143 204 GNLGIAY-------------FQSGDMEQSAKCFQDLILKDQN-HPAALINYAALLLCKYGSVLAGAGANTGEGACLDQAS 269 (470)
Q Consensus 204 ~~la~~~-------------~~~g~~~~A~~~~~~~l~~~p~-~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 269 (470)
......- ...+.+..|...|+.+....+. ....|..+...-.... .+. ...+
T Consensus 128 ~~Y~~fE~~~~~~~~~~~~~~~~~~y~~ar~~y~~~~~~~~~~s~~~W~~y~~~E~~~~------------~~~--~~~~ 193 (493)
T 2uy1_A 128 KDFENFELELNKITGKKIVGDTLPIFQSSFQRYQQIQPLIRGWSVKNAARLIDLEMENG------------MKL--GGRP 193 (493)
T ss_dssp HHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCSHHHHHHHHHHHHTCT------------TCC--CHHH
T ss_pred HHHHHHHHHhccccHHHHHHHHhHHHHHHHHHHHHHHHHHhhccHHHHHHHHHHHhcCC------------ccC--cchh
Confidence 2111111 1112334444445544443222 2223333222211000 000 0000
Q ss_pred CHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCChhHHHHHHHHHHhcCCCcccHHHHHHHHHHHHhhhccCchHHhhh
Q 012143 270 AVNVAKECLLAALKADPKAAHIWANLANAYYLTGDHRSSGKCLEKAAKLEPNCMSTRYAVAVSRIKDAERSQEPTEQLSW 349 (470)
Q Consensus 270 ~~~~A~~~~~~~~~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~p~~~~~~~~l~~~~~~~~~~~~~~~~~~~~ 349 (470)
..+.....|++++...|..+.+|...+..+...|+.++|...|++++.. |.+...+...+.. .+.. ..
T Consensus 194 ~~~Rv~~~ye~al~~~p~~~~lW~~ya~~~~~~~~~~~ar~i~erAi~~-P~~~~l~~~y~~~--~e~~-------~~-- 261 (493)
T 2uy1_A 194 HESRMHFIHNYILDSFYYAEEVYFFYSEYLIGIGQKEKAKKVVERGIEM-SDGMFLSLYYGLV--MDEE-------AV-- 261 (493)
T ss_dssp HHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH-CCSSHHHHHHHHH--TTCT-------HH--
T ss_pred hHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhC-CCcHHHHHHHHhh--cchh-------HH--
Confidence 1455778999999999999999999999999999999999999999999 9987655543322 1000 00
Q ss_pred hHHHHHHHhhcCC------CCCCCcHHHHHHHHHHHhccccHHHHHHHHHHHhcch-hhhhHhhHHHHHHHhc-cHHHHH
Q 012143 350 AGNEMASILREGD------PVQIEPPIAWAGFAAVQKTHHEVAAAFETEENELSKM-EECAGAGESAFLDQAS-AVNVAK 421 (470)
Q Consensus 350 ~~~~~~~~~~~~~------~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~l~~~~~~~~-~~~~A~ 421 (470)
...+........ ........+|...+....+.+..+.|...|.++..+. ....|...|..-...+ +.+.|.
T Consensus 262 -~~~l~~~~~~~~~~~~~~~~~~~~~~lw~~y~~~~~r~~~~~~AR~i~~~A~~~~~~~~v~i~~A~lE~~~~~d~~~ar 340 (493)
T 2uy1_A 262 -YGDLKRKYSMGEAESAEKVFSKELDLLRINHLNYVLKKRGLELFRKLFIELGNEGVGPHVFIYCAFIEYYATGSRATPY 340 (493)
T ss_dssp -HHHHHHHTC----------CHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHTTSCCCHHHHHHHHHHHHHHHCCSHHHH
T ss_pred -HHHHHHHHHhhccchhhhhcccccHHHHHHHHHHHHHcCCHHHHHHHHHHhhCCCCChHHHHHHHHHHHHHCCChHHHH
Confidence 111111110000 0011234678888888878888899988888872221 2234544455545455 588999
Q ss_pred HHHHHHHhcCCCcHHHHHHHHHHHHHcCChHHHHHHHHHH
Q 012143 422 ECLLAALKADPKAAHIWANLANAYYLTGDHRSSGKCLEKV 461 (470)
Q Consensus 422 ~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~a 461 (470)
..|+.+++..|+.+..|...+......|+.+.|...|+++
T Consensus 341 ~ife~al~~~~~~~~~~~~yid~e~~~~~~~~aR~l~er~ 380 (493)
T 2uy1_A 341 NIFSSGLLKHPDSTLLKEEFFLFLLRIGDEENARALFKRL 380 (493)
T ss_dssp HHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHS
T ss_pred HHHHHHHHHCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 9999999988888888877777777888888888777765
|
| >3ro3_A PINS homolog, G-protein-signaling modulator 2; asymmetric cell division, protein binding; 1.10A {Mus musculus} | Back alignment and structure |
|---|
Probab=99.44 E-value=8.5e-13 Score=104.65 Aligned_cols=142 Identities=18% Similarity=0.205 Sum_probs=113.0
Q ss_pred chHHHHHHHHHHHHcCChHHHHHHHHHHhhcCCCCh------HHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCChHHHH
Q 012143 165 QAVVWNTLGLILLKSGRLQSSISVLSSLLAVDPNNC------DCIGNLGIAYFQSGDMEQSAKCFQDLILKDQNHPAALI 238 (470)
Q Consensus 165 ~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~------~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~ 238 (470)
...++..+|.++...|++++|+.+++++++..+... .++..+|.++...|++++|+..+++++...+......
T Consensus 8 ~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~- 86 (164)
T 3ro3_A 8 QGRAFGNLGNTHYLLGNFRDAVIAHEQRLLIAKEFGDKAAERIAYSNLGNAYIFLGEFETASEYYKKTLLLARQLKDRA- 86 (164)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHH-
T ss_pred HHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHhCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCCcH-
Confidence 356889999999999999999999999998865432 4889999999999999999999999998765432111
Q ss_pred HHHHHHHhhhcccccccccchhhhhHHHhcCCHHHHHHHHHHHHhcCCC------CHHHHHHHHHHHHHcCChhHHHHHH
Q 012143 239 NYAALLLCKYGSVLAGAGANTGEGACLDQASAVNVAKECLLAALKADPK------AAHIWANLANAYYLTGDHRSSGKCL 312 (470)
Q Consensus 239 ~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~p~------~~~~~~~la~~~~~~g~~~~A~~~~ 312 (470)
..+.++. .+|.++...|++++|+.++++++...+. ...++..+|.++...|++++|+.++
T Consensus 87 ~~~~~~~--------------~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~ 152 (164)
T 3ro3_A 87 VEAQSCY--------------SLGNTYTLLQDYEKAIDYHLKHLAIAQELKDRIGEGRACWSLGNAYTALGNHDQAMHFA 152 (164)
T ss_dssp HHHHHHH--------------HHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHH
T ss_pred HHHHHHH--------------HHHHHHHHHhhHHHHHHHHHHHHHHHHHccchHhHHHHHHHHHHHHHHccCHHHHHHHH
Confidence 1111111 2355556899999999999999977432 3567899999999999999999999
Q ss_pred HHHHhcCCC
Q 012143 313 EKAAKLEPN 321 (470)
Q Consensus 313 ~~a~~~~p~ 321 (470)
++++++...
T Consensus 153 ~~a~~~~~~ 161 (164)
T 3ro3_A 153 EKHLEISRE 161 (164)
T ss_dssp HHHHHHHTT
T ss_pred HHHHHHHHH
Confidence 999987554
|
| >1elr_A TPR2A-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, protein binding, chaperone; 1.90A {Homo sapiens} SCOP: a.118.8.1 PDB: 3esk_A 3fwv_A | Back alignment and structure |
|---|
Probab=99.43 E-value=2.2e-12 Score=98.09 Aligned_cols=110 Identities=15% Similarity=0.172 Sum_probs=99.5
Q ss_pred CChHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCChHHHHHHHHHHHhhhcccccccccchhhhhHHHhcCCHHHHHHH
Q 012143 198 NNCDCIGNLGIAYFQSGDMEQSAKCFQDLILKDQNHPAALINYAALLLCKYGSVLAGAGANTGEGACLDQASAVNVAKEC 277 (470)
Q Consensus 198 ~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~ 277 (470)
..+..+..+|.++...|++++|+..|++++..+|.++.++..+|.++. ..|++++|+.+
T Consensus 2 ~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~la~~~~---------------------~~~~~~~A~~~ 60 (131)
T 1elr_A 2 KQALKEKELGNDAYKKKDFDTALKHYDKAKELDPTNMTYITNQAAVYF---------------------EKGDYNKCREL 60 (131)
T ss_dssp HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHH---------------------HHTCHHHHHHH
T ss_pred hHHHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCCccHHHHHHHHHHHH---------------------HhccHHHHHHH
Confidence 346789999999999999999999999999999999999998888887 79999999999
Q ss_pred HHHHHhcCCCC-------HHHHHHHHHHHHHcCChhHHHHHHHHHHhcCCCcccHHHHH
Q 012143 278 LLAALKADPKA-------AHIWANLANAYYLTGDHRSSGKCLEKAAKLEPNCMSTRYAV 329 (470)
Q Consensus 278 ~~~~~~~~p~~-------~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~p~~~~~~~~l 329 (470)
+++++...|.+ +.++..+|.++...|++++|+.+|++++...|+ +.....+
T Consensus 61 ~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~-~~~~~~l 118 (131)
T 1elr_A 61 CEKAIEVGRENREDYRQIAKAYARIGNSYFKEEKYKDAIHFYNKSLAEHRT-PDVLKKC 118 (131)
T ss_dssp HHHHHHHHHHSTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCC-HHHHHHH
T ss_pred HHHHHhhccccchhHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCC-HHHHHHH
Confidence 99999998877 899999999999999999999999999999984 4444433
|
| >2uy1_A Cleavage stimulation factor 77; RNA-binding protein; 2.0A {Encephalitozoon cuniculi} PDB: 2uy1_B | Back alignment and structure |
|---|
Probab=99.42 E-value=1.6e-10 Score=108.38 Aligned_cols=366 Identities=8% Similarity=-0.099 Sum_probs=227.5
Q ss_pred hhhhhhhHHHHHHHHHHHHhcCCCCcchhhhcccchhhhhc-ChhhHHHHHHHHHHh---CCCChhHHHHHHHHHH----
Q 012143 15 INKLGKCRSRISSKMDSALEFGVDADGDQSGLGTSSSSREE-KVSSLKTGLVHVARK---MPKNAHAHFLLGLMYQ---- 86 (470)
Q Consensus 15 ~~~~g~~~~a~~~~~~~~l~~~p~~~~~~~~~~~~~~~~~~-~~~~A~~~~~~~l~~---~p~~~~~~~~l~~~~~---- 86 (470)
.+-.|+++.+. ..|++++...| +...|...... ....+ ..+.....|+.++.. +|.++..|......+.
T Consensus 24 ~~P~~~~e~~~-~iferal~~~p-s~~LW~~Y~~f-~~~~~~~~~~i~~~fe~al~~vg~d~~s~~iW~~Yi~f~~~~~~ 100 (493)
T 2uy1_A 24 LYMSKDYRSLE-SLFGRCLKKSY-NLDLWMLYIEY-VRKVSQKKFKLYEVYEFTLGQFENYWDSYGLYKEYIEEEGKIED 100 (493)
T ss_dssp HHHTTCHHHHH-HHHHHHSTTCC-CHHHHHHHHHH-HHHHC----CTHHHHHHHHHHSTTCTTCHHHHHHHHHHTSSCSS
T ss_pred HCCCCCHHHHH-HHHHHHhccCC-CHHHHHHHHHH-HHHhCchHHHHHHHHHHHHHHcCCCcccHHHHHHHHHHHHhchh
Confidence 34447788887 89999999888 77778765555 44433 345677888888864 7888888888887754
Q ss_pred HhCChhHHHHHHHHHHHHHhhhhcccchhhhHHHHHHhhhccccccccCCCccccccCcccHHHHHHHHHHhhhcCcc-c
Q 012143 87 RLGQPLKAVSSYEKAEEILLRCEADIARPELLSLVQIHHAQCLLPESSGDNSLDKELEPEELEEILSKLKESMQSDTR-Q 165 (470)
Q Consensus 87 ~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~p~-~ 165 (470)
.+|+.+.+...|++++.. |..........+.......... .+-..+ .-..+.+..|...++.+....+. +
T Consensus 101 ~~~~~~~vR~iy~rAL~~-P~~~~~~lw~~Y~~fE~~~~~~-~~~~~~-------~~~~~~y~~ar~~y~~~~~~~~~~s 171 (493)
T 2uy1_A 101 EQTRIEKIRNGYMRALQT-PMGSLSELWKDFENFELELNKI-TGKKIV-------GDTLPIFQSSFQRYQQIQPLIRGWS 171 (493)
T ss_dssp HHHHHHHHHHHHHHHHTS-CCTTHHHHHHHHHHHHHHHCHH-HHHHHH-------HHHHHHHHHHHHHHHHHHHHHHTCS
T ss_pred hhHHHHHHHHHHHHHHhC-hhhhHHHHHHHHHHHHHHhccc-cHHHHH-------HHHhHHHHHHHHHHHHHHHHHhhcc
Confidence 457788999999999984 4321111111111000000000 000000 00113345556556655544332 3
Q ss_pred hHHHHHHHHHHHHc--CC-----hHHHHHHHHHHhhcCCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCChHHHH
Q 012143 166 AVVWNTLGLILLKS--GR-----LQSSISVLSSLLAVDPNNCDCIGNLGIAYFQSGDMEQSAKCFQDLILKDQNHPAALI 238 (470)
Q Consensus 166 ~~~~~~l~~~~~~~--~~-----~~~A~~~~~~a~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~ 238 (470)
...|......-... |- .......|++++...|..+..|...+..+...|+.++|...|++++.. |.+...+.
T Consensus 172 ~~~W~~y~~~E~~~~~~~~~~~~~~Rv~~~ye~al~~~p~~~~lW~~ya~~~~~~~~~~~ar~i~erAi~~-P~~~~l~~ 250 (493)
T 2uy1_A 172 VKNAARLIDLEMENGMKLGGRPHESRMHFIHNYILDSFYYAEEVYFFYSEYLIGIGQKEKAKKVVERGIEM-SDGMFLSL 250 (493)
T ss_dssp HHHHHHHHHHHHTCTTCCCHHHHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH-CCSSHHHH
T ss_pred HHHHHHHHHHHhcCCccCcchhhHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhC-CCcHHHHH
Confidence 34555544432221 11 345678999999999999999999999999999999999999999999 98877666
Q ss_pred HHHHHHHhhhcccccccccchhhhhHHHhcCC-HHHHHHHHHHH------HhcCCCCHHHHHHHHHHHHHcCChhHHHHH
Q 012143 239 NYAALLLCKYGSVLAGAGANTGEGACLDQASA-VNVAKECLLAA------LKADPKAAHIWANLANAYYLTGDHRSSGKC 311 (470)
Q Consensus 239 ~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~A~~~~~~~------~~~~p~~~~~~~~la~~~~~~g~~~~A~~~ 311 (470)
..+.... .++ ++.....+... ....+....+|...+....+.+..+.|...
T Consensus 251 ~y~~~~e----------------------~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~lw~~y~~~~~r~~~~~~AR~i 308 (493)
T 2uy1_A 251 YYGLVMD----------------------EEAVYGDLKRKYSMGEAESAEKVFSKELDLLRINHLNYVLKKRGLELFRKL 308 (493)
T ss_dssp HHHHHTT----------------------CTHHHHHHHHHTC----------CHHHHHHHHHHHHHHHHHHHCHHHHHHH
T ss_pred HHHhhcc----------------------hhHHHHHHHHHHHhhccchhhhhcccccHHHHHHHHHHHHHcCCHHHHHHH
Confidence 5443311 000 01100000000 000111246677778887788889999999
Q ss_pred HHHHHhcCCCcccHHHHHHHHHHHHhhhccCchHHhhhhHHHHHHHhhcCCCCCCCcHHHHHHHHHHHhccc-cHHHHHH
Q 012143 312 LEKAAKLEPNCMSTRYAVAVSRIKDAERSQEPTEQLSWAGNEMASILREGDPVQIEPPIAWAGFAAVQKTHH-EVAAAFE 390 (470)
Q Consensus 312 ~~~a~~~~p~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~-~~~~A~~ 390 (470)
|+++ . .|.. .. .+|...+.+....+ +.+.|..
T Consensus 309 ~~~A-~-~~~~-~~--------------------------------------------~v~i~~A~lE~~~~~d~~~ar~ 341 (493)
T 2uy1_A 309 FIEL-G-NEGV-GP--------------------------------------------HVFIYCAFIEYYATGSRATPYN 341 (493)
T ss_dssp HHHH-T-TSCC-CH--------------------------------------------HHHHHHHHHHHHHHCCSHHHHH
T ss_pred HHHh-h-CCCC-Ch--------------------------------------------HHHHHHHHHHHHHCCChHHHHH
Confidence 9998 3 3431 11 13333333333334 4777888
Q ss_pred HHHHHhc--chhhhhHhhHHHHHHHhccHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHcCChHHHHHHHHHHHHhhc
Q 012143 391 TEENELS--KMEECAGAGESAFLDQASAVNVAKECLLAALKADPKAAHIWANLANAYYLTGDHRSSGKCLEKVLMVYC 466 (470)
Q Consensus 391 ~~~~~~~--~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~ 466 (470)
.+..++. +..+..|...+......|+.+.|...|+++ +.....|......-...|+.+.+...++++++.+.
T Consensus 342 ife~al~~~~~~~~~~~~yid~e~~~~~~~~aR~l~er~----~k~~~lw~~~~~fE~~~G~~~~~r~v~~~~~~~~~ 415 (493)
T 2uy1_A 342 IFSSGLLKHPDSTLLKEEFFLFLLRIGDEENARALFKRL----EKTSRMWDSMIEYEFMVGSMELFRELVDQKMDAIK 415 (493)
T ss_dssp HHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHS----CCBHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHH----HHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHhc
Confidence 8877665 223344566666777889999999999987 35678888888888888999999999999998664
|
| >3ro3_A PINS homolog, G-protein-signaling modulator 2; asymmetric cell division, protein binding; 1.10A {Mus musculus} | Back alignment and structure |
|---|
Probab=99.38 E-value=4.7e-12 Score=100.30 Aligned_cols=141 Identities=17% Similarity=0.043 Sum_probs=111.2
Q ss_pred hhHHHHHHHHHHHhCChhHHHHHHHHHHHHHhhhhcccchhhhHHHHHHhhhccccccccCCCccccccCcccHHHHHHH
Q 012143 75 AHAHFLLGLMYQRLGQPLKAVSSYEKAEEILLRCEADIARPELLSLVQIHHAQCLLPESSGDNSLDKELEPEELEEILSK 154 (470)
Q Consensus 75 ~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~ 154 (470)
..++..+|.++...|++++|+.+++++++..+... +....+.++..++.++ ...|++++|+..
T Consensus 9 ~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~~~------~~~~~~~~~~~l~~~~-----------~~~g~~~~A~~~ 71 (164)
T 3ro3_A 9 GRAFGNLGNTHYLLGNFRDAVIAHEQRLLIAKEFG------DKAAERIAYSNLGNAY-----------IFLGEFETASEY 71 (164)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHT------CHHHHHHHHHHHHHHH-----------HHTTCHHHHHHH
T ss_pred HHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHhC------CchHHHHHHHHHHHHH-----------HHcCCHHHHHHH
Confidence 45788899999999999999999999998876532 2222334455555554 455667999999
Q ss_pred HHHhhhcCccc------hHHHHHHHHHHHHcCChHHHHHHHHHHhhcCCC------ChHHHHHHHHHHHHcCCHHHHHHH
Q 012143 155 LKESMQSDTRQ------AVVWNTLGLILLKSGRLQSSISVLSSLLAVDPN------NCDCIGNLGIAYFQSGDMEQSAKC 222 (470)
Q Consensus 155 ~~~~~~~~p~~------~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~------~~~~~~~la~~~~~~g~~~~A~~~ 222 (470)
+++++...+.. ..++..+|.++...|++++|+.++++++...+. ...++..+|.++...|++++|+..
T Consensus 72 ~~~a~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~ 151 (164)
T 3ro3_A 72 YKKTLLLARQLKDRAVEAQSCYSLGNTYTLLQDYEKAIDYHLKHLAIAQELKDRIGEGRACWSLGNAYTALGNHDQAMHF 151 (164)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHH
T ss_pred HHHHHHHHHHhCCcHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHccchHhHHHHHHHHHHHHHHccCHHHHHHH
Confidence 99988765543 568889999999999999999999999987332 256789999999999999999999
Q ss_pred HHHHHhhCCC
Q 012143 223 FQDLILKDQN 232 (470)
Q Consensus 223 ~~~~l~~~p~ 232 (470)
+++++++...
T Consensus 152 ~~~a~~~~~~ 161 (164)
T 3ro3_A 152 AEKHLEISRE 161 (164)
T ss_dssp HHHHHHHHTT
T ss_pred HHHHHHHHHH
Confidence 9999987543
|
| >2kat_A Uncharacterized protein; NESG, structure, structural genomics, PSI-2, protein structure initiative; NMR {Bordetella parapertussis} | Back alignment and structure |
|---|
Probab=99.30 E-value=3.5e-11 Score=89.12 Aligned_cols=84 Identities=18% Similarity=0.256 Sum_probs=80.8
Q ss_pred HHHHHHHHhhhcCccchHHHHHHHHHHHHcCChHHHHHHHHHHhhcCCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHhh
Q 012143 150 EILSKLKESMQSDTRQAVVWNTLGLILLKSGRLQSSISVLSSLLAVDPNNCDCIGNLGIAYFQSGDMEQSAKCFQDLILK 229 (470)
Q Consensus 150 ~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~ 229 (470)
+|+..|++++..+|+++.+++.+|.++...|++++|+..|++++..+|+++.++..+|.++...|++++|+..|++++.+
T Consensus 3 ~a~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~ 82 (115)
T 2kat_A 3 AITERLEAMLAQGTDNMLLRFTLGKTYAEHEQFDAALPHLRAALDFDPTYSVAWKWLGKTLQGQGDRAGARQAWESGLAA 82 (115)
T ss_dssp CHHHHHHHHHTTTCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhCCCcHHHHHHHHHHHHHccCHHHHHHHHHHHHHHCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence 57899999999999999999999999999999999999999999999999999999999999999999999999999998
Q ss_pred CCCC
Q 012143 230 DQNH 233 (470)
Q Consensus 230 ~p~~ 233 (470)
.|..
T Consensus 83 ~~~~ 86 (115)
T 2kat_A 83 AQSR 86 (115)
T ss_dssp HHHH
T ss_pred cccc
Confidence 8743
|
| >2kat_A Uncharacterized protein; NESG, structure, structural genomics, PSI-2, protein structure initiative; NMR {Bordetella parapertussis} | Back alignment and structure |
|---|
Probab=99.27 E-value=3.9e-11 Score=88.84 Aligned_cols=83 Identities=16% Similarity=0.095 Sum_probs=58.9
Q ss_pred HHHHHHHHHhhcCCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCChHHHHHHHHHHHhhhcccccccccchhhhh
Q 012143 184 SSISVLSSLLAVDPNNCDCIGNLGIAYFQSGDMEQSAKCFQDLILKDQNHPAALINYAALLLCKYGSVLAGAGANTGEGA 263 (470)
Q Consensus 184 ~A~~~~~~a~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~ 263 (470)
+|+..|+++++.+|+++.+++.+|.++...|++++|+..|++++..+|.+..++..+|.++.
T Consensus 3 ~a~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~------------------ 64 (115)
T 2kat_A 3 AITERLEAMLAQGTDNMLLRFTLGKTYAEHEQFDAALPHLRAALDFDPTYSVAWKWLGKTLQ------------------ 64 (115)
T ss_dssp CHHHHHHHHHTTTCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHH------------------
T ss_pred HHHHHHHHHHHhCCCcHHHHHHHHHHHHHccCHHHHHHHHHHHHHHCCCcHHHHHHHHHHHH------------------
Confidence 46677777777777777777777777777777777777777777777777776666666665
Q ss_pred HHHhcCCHHHHHHHHHHHHhcCCC
Q 012143 264 CLDQASAVNVAKECLLAALKADPK 287 (470)
Q Consensus 264 ~~~~~~~~~~A~~~~~~~~~~~p~ 287 (470)
..|++++|+..|++++.+.|.
T Consensus 65 ---~~g~~~~A~~~~~~al~~~~~ 85 (115)
T 2kat_A 65 ---GQGDRAGARQAWESGLAAAQS 85 (115)
T ss_dssp ---HHTCHHHHHHHHHHHHHHHHH
T ss_pred ---HcCCHHHHHHHHHHHHHhccc
Confidence 567777777777777766553
|
| >2l6j_A TPR repeat-containing protein associated with HSP; tetratricopeptide repeat (TPR), HSP90 CO-factor, protein BIN; NMR {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=99.26 E-value=6.2e-12 Score=92.54 Aligned_cols=67 Identities=18% Similarity=0.220 Sum_probs=33.4
Q ss_pred HHHHHHHHHHHHcCChHHHHHHHHHHhhcCCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCC
Q 012143 167 VVWNTLGLILLKSGRLQSSISVLSSLLAVDPNNCDCIGNLGIAYFQSGDMEQSAKCFQDLILKDQNH 233 (470)
Q Consensus 167 ~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~ 233 (470)
.++..+|.++...|++++|+..|+++++.+|+++.++..+|.++..+|++++|+..+++++.++|++
T Consensus 5 ~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~ 71 (111)
T 2l6j_A 5 EKQKEQGNSLFKQGLYREAVHCYDQLITAQPQNPVGYSNKAMALIKLGEYTQAIQMCQQGLRYTSTA 71 (111)
T ss_dssp HHHHHHHHHHHTTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTSCSST
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCc
Confidence 3444455555555555555555555555555544455555555555555555555555554444444
|
| >2l6j_A TPR repeat-containing protein associated with HSP; tetratricopeptide repeat (TPR), HSP90 CO-factor, protein BIN; NMR {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=99.26 E-value=3.7e-12 Score=93.75 Aligned_cols=85 Identities=13% Similarity=0.147 Sum_probs=79.3
Q ss_pred ccCcccHHHHHHHHHHhhhcCccchHHHHHHHHHHHHcCChHHHHHHHHHHhhcCCCC------hHHHHHHHHHHHHcCC
Q 012143 142 ELEPEELEEILSKLKESMQSDTRQAVVWNTLGLILLKSGRLQSSISVLSSLLAVDPNN------CDCIGNLGIAYFQSGD 215 (470)
Q Consensus 142 ~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~------~~~~~~la~~~~~~g~ 215 (470)
+...|++++|+..|++++..+|+++.++..+|.++...|++++|+..|+++++++|++ ..++..+|.++...|+
T Consensus 14 ~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~~~~ 93 (111)
T 2l6j_A 14 LFKQGLYREAVHCYDQLITAQPQNPVGYSNKAMALIKLGEYTQAIQMCQQGLRYTSTAEHVAIRSKLQYRLELAQGAVGS 93 (111)
T ss_dssp HHTTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTSCSSTTSHHHHHHHHHHHHHHHHHHHC
T ss_pred HHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCccHHHHHHHHHHHHHHHHHHHHh
Confidence 7899999999999999999999999999999999999999999999999999999998 8899999999999998
Q ss_pred HHHHHHHHHHH
Q 012143 216 MEQSAKCFQDL 226 (470)
Q Consensus 216 ~~~A~~~~~~~ 226 (470)
++.|+..+++.
T Consensus 94 ~~~a~~~~~~~ 104 (111)
T 2l6j_A 94 VQIPVVEVDEL 104 (111)
T ss_dssp CCCCSSSSSSC
T ss_pred HhhhHhHHHHh
Confidence 88887766543
|
| >1na3_A Designed protein CTPR2; de novo protein; HET: IPT; 1.55A {Unidentified} SCOP: k.38.1.1 PDB: 2avp_A | Back alignment and structure |
|---|
Probab=99.25 E-value=1e-10 Score=82.39 Aligned_cols=83 Identities=29% Similarity=0.464 Sum_probs=79.1
Q ss_pred ccchHHHHHHHHHHHHcCChHHHHHHHHHHhhcCCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCChHHHHHHHH
Q 012143 163 TRQAVVWNTLGLILLKSGRLQSSISVLSSLLAVDPNNCDCIGNLGIAYFQSGDMEQSAKCFQDLILKDQNHPAALINYAA 242 (470)
Q Consensus 163 p~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~l~~ 242 (470)
|.++.+++.+|.++...|++++|+.+|+++++.+|+++.++..+|.++...|++++|+..+++++..+|+++.++..++.
T Consensus 6 ~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~l~~ 85 (91)
T 1na3_A 6 GNSAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPNNAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPNNAEAKQNLGN 85 (91)
T ss_dssp CHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHH
T ss_pred cccHHHHHHHHHHHHHccCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCCCHHHHHHHHH
Confidence 35678999999999999999999999999999999999999999999999999999999999999999999999999998
Q ss_pred HHH
Q 012143 243 LLL 245 (470)
Q Consensus 243 ~~~ 245 (470)
++.
T Consensus 86 ~~~ 88 (91)
T 1na3_A 86 AKQ 88 (91)
T ss_dssp HHH
T ss_pred HHH
Confidence 876
|
| >1na3_A Designed protein CTPR2; de novo protein; HET: IPT; 1.55A {Unidentified} SCOP: k.38.1.1 PDB: 2avp_A | Back alignment and structure |
|---|
Probab=99.22 E-value=1.6e-10 Score=81.30 Aligned_cols=85 Identities=29% Similarity=0.397 Sum_probs=75.7
Q ss_pred CChHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCChHHHHHHHHHHHhhhcccccccccchhhhhHHHhcCCHHHHHHH
Q 012143 198 NNCDCIGNLGIAYFQSGDMEQSAKCFQDLILKDQNHPAALINYAALLLCKYGSVLAGAGANTGEGACLDQASAVNVAKEC 277 (470)
Q Consensus 198 ~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~ 277 (470)
.++.+++.+|.++...|++++|+..|++++..+|.++.++..+|.++. ..|++++|+.+
T Consensus 7 ~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~---------------------~~~~~~~A~~~ 65 (91)
T 1na3_A 7 NSAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPNNAEAWYNLGNAYY---------------------KQGDYDEAIEY 65 (91)
T ss_dssp HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHH---------------------HTTCHHHHHHH
T ss_pred ccHHHHHHHHHHHHHccCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHH---------------------HHhhHHHHHHH
Confidence 456788999999999999999999999999999999988888888877 68999999999
Q ss_pred HHHHHhcCCCCHHHHHHHHHHHHHcC
Q 012143 278 LLAALKADPKAAHIWANLANAYYLTG 303 (470)
Q Consensus 278 ~~~~~~~~p~~~~~~~~la~~~~~~g 303 (470)
|+++++.+|+++.++..+|.++...|
T Consensus 66 ~~~a~~~~p~~~~~~~~l~~~~~~~g 91 (91)
T 1na3_A 66 YQKALELDPNNAEAKQNLGNAKQKQG 91 (91)
T ss_dssp HHHHHHHCTTCHHHHHHHHHHHHHHC
T ss_pred HHHHHhcCCCCHHHHHHHHHHHHhcC
Confidence 99999999999999999999887765
|
| >3ma5_A Tetratricopeptide repeat domain protein; NESG, structural genomics, PSI-2, protein structure initiative; 2.80A {Salinibacter ruber} PDB: 2kcl_A 2kcv_A | Back alignment and structure |
|---|
Probab=99.20 E-value=1.4e-10 Score=83.24 Aligned_cols=73 Identities=15% Similarity=0.231 Sum_probs=67.4
Q ss_pred cCccchHHHHHHHHHHHHcCChHHHHHHHHHHhhcCCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCC
Q 012143 161 SDTRQAVVWNTLGLILLKSGRLQSSISVLSSLLAVDPNNCDCIGNLGIAYFQSGDMEQSAKCFQDLILKDQNH 233 (470)
Q Consensus 161 ~~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~ 233 (470)
.+|+++.+++.+|.++...|++++|+..|+++++.+|+++.+++.+|.++...|++++|+..|++++++.|..
T Consensus 2 ~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~~~~ 74 (100)
T 3ma5_A 2 EDPEDPFTRYALAQEHLKHDNASRALALFEELVETDPDYVGTYYHLGKLYERLDRTDDAIDTYAQGIEVAREE 74 (100)
T ss_dssp ---CCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHH
T ss_pred CCccCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhhhcC
Confidence 4799999999999999999999999999999999999999999999999999999999999999999987643
|
| >3u64_A Protein TP_0956; tetratrico peptide repeat, protein-prote interaction, syphilis, lipoprotein, transport protein; 2.30A {Treponema pallidum subsp} PDB: 4di3_A 4di4_A* | Back alignment and structure |
|---|
Probab=99.14 E-value=1.8e-09 Score=90.10 Aligned_cols=188 Identities=16% Similarity=0.143 Sum_probs=130.7
Q ss_pred hcChhhHHHHHHHHHHhCCCChhHHHHHHHHHHHhC---------------------ChhHHHHHHHHHHHHHhhhhccc
Q 012143 54 EEKVSSLKTGLVHVARKMPKNAHAHFLLGLMYQRLG---------------------QPLKAVSSYEKAEEILLRCEADI 112 (470)
Q Consensus 54 ~~~~~~A~~~~~~~l~~~p~~~~~~~~l~~~~~~~g---------------------~~~~A~~~~~~al~~~~~~~~~~ 112 (470)
.+-+.-....++..+..+|++...+...|..|..-+ ++..|..+|.++.+..-.
T Consensus 45 ~~~~P~~Lk~~e~Ll~~~P~~~~Ll~~~a~ly~~Ya~afV~~~a~~~~~~~~~~~~~~~~RA~~Ly~ra~~y~~r----- 119 (301)
T 3u64_A 45 AQSLPLVLKVYEALHLQNPAHRGLSLAVGRLYIMYANAFVQTPAQYLPEDEFEAQNEAYSRARKLYLRGARYALS----- 119 (301)
T ss_dssp HHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHHHHTHHHHHTSCGGGHHHHHHHHHHHHHHHHHHHHHHHH-----
T ss_pred HHhccHHHHHHHHHHhhCCCCHHHHHHHHHHHHHHHHHHhcCchhhcchhhHhhhhhhHHHHHHHHHHHHHHHHH-----
Confidence 334455667788888999999887776666654321 244666777766654210
Q ss_pred chhhhHHHHHHhhhccccccccCCCccccccCcccHHHHHHHHHHhhhcCccchHHHHHHHHHHHH-----cCC------
Q 012143 113 ARPELLSLVQIHHAQCLLPESSGDNSLDKELEPEELEEILSKLKESMQSDTRQAVVWNTLGLILLK-----SGR------ 181 (470)
Q Consensus 113 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~-----~~~------ 181 (470)
.+...+..++. .+..++..+-.+ ..-+.+|+++++++..|.+... .|.
T Consensus 120 ------aL~~~~~~~~~------------~~~~~~~~~~~~---~l~~~~~~dve~L~W~ai~~ss~a~~~~gg~~Al~~ 178 (301)
T 3u64_A 120 ------SLETAYPGFTR------------EVFSGDEQRLHK---VLSRCTRVDVGTLYWVGTGYVAAFALTPLGSALPDT 178 (301)
T ss_dssp ------HHHHHSTTHHH------------HHTSSCHHHHHH---HHTTCCGGGHHHHHHHHHHHHHHHTTSCTTSCCHHH
T ss_pred ------HHHHhCccHHH------------HHHhcchhhHHH---HHHHcCccccHHHHHHHHHHHHHHhcCCCChHHHHh
Confidence 00000111110 122332211111 2334578888888887776644 133
Q ss_pred hHHHHHHHHHHhhcCCC--ChHHHHHHHHHHHHc-----CCHHHHHHHHHHHHhhCCCC-hHHHHHHHHHHHhhhccccc
Q 012143 182 LQSSISVLSSLLAVDPN--NCDCIGNLGIAYFQS-----GDMEQSAKCFQDLILKDQNH-PAALINYAALLLCKYGSVLA 253 (470)
Q Consensus 182 ~~~A~~~~~~a~~~~~~--~~~~~~~la~~~~~~-----g~~~~A~~~~~~~l~~~p~~-~~~~~~l~~~~~~~~~~~~~ 253 (470)
...|...++++++++|+ +..+|..+|.+|... |+.++|.++|+++++++|+. ...++.++..+..
T Consensus 179 l~~A~a~lerAleLDP~~~~GsA~~~LG~lY~~vPp~~gGd~ekA~~~ferAL~LnP~~~id~~v~YA~~l~~------- 251 (301)
T 3u64_A 179 VHAAVMMLERACDLWPSYQEGAVWNVLTKFYAAAPESFGGGMEKAHTAFEHLTRYCSAHDPDHHITYADALCI------- 251 (301)
T ss_dssp HHHHHHHHHHHHHHCTTHHHHHHHHHHHHHHHHSCTTTTCCHHHHHHHHHHHHHHCCTTCSHHHHHHHHHTTT-------
T ss_pred HHHHHHHHHHHHHhCCCcccCHHHHHHHHHHHhCCCccCCCHHHHHHHHHHHHHhCCCCCchHHHHHHHHHHH-------
Confidence 57899999999999999 677999999999995 99999999999999999975 9999998888763
Q ss_pred ccccchhhhhHHHhcCCHHHHHHHHHHHHhcCCC
Q 012143 254 GAGANTGEGACLDQASAVNVAKECLLAALKADPK 287 (470)
Q Consensus 254 ~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~p~ 287 (470)
..|++++|..++++++...|.
T Consensus 252 -------------~~gd~~~a~~~L~kAL~a~p~ 272 (301)
T 3u64_A 252 -------------PLNNRAGFDEALDRALAIDPE 272 (301)
T ss_dssp -------------TTTCHHHHHHHHHHHHHCCGG
T ss_pred -------------hcCCHHHHHHHHHHHHcCCCC
Confidence 369999999999999998877
|
| >1klx_A Cysteine rich protein B; structural genomics, helix-turn-helix, right handed super helix, modular structure', hydrolase; 1.95A {Helicobacter pylori} SCOP: a.118.18.1 | Back alignment and structure |
|---|
Probab=99.12 E-value=2.3e-09 Score=81.82 Aligned_cols=125 Identities=14% Similarity=0.083 Sum_probs=104.3
Q ss_pred cccHHHHHHHHHHhhhcCccchHHHHHHHHHHHHcCChHHHHHHHHHHhhcCCCChHHHHHHHHHHHH----cCCHHHHH
Q 012143 145 PEELEEILSKLKESMQSDTRQAVVWNTLGLILLKSGRLQSSISVLSSLLAVDPNNCDCIGNLGIAYFQ----SGDMEQSA 220 (470)
Q Consensus 145 ~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~la~~~~~----~g~~~~A~ 220 (470)
.+++++|+.+|+++.+..+ +.+. +|.+|...+..++|+.+|+++.+. .++.+++.+|.+|.. .+++++|+
T Consensus 8 ~~d~~~A~~~~~~aa~~g~--~~a~--lg~~y~~g~~~~~A~~~~~~Aa~~--g~~~a~~~Lg~~y~~G~g~~~d~~~A~ 81 (138)
T 1klx_A 8 KKDLKKAIQYYVKACELNE--MFGC--LSLVSNSQINKQKLFQYLSKACEL--NSGNGCRFLGDFYENGKYVKKDLRKAA 81 (138)
T ss_dssp HHHHHHHHHHHHHHHHTTC--TTHH--HHHHTCTTSCHHHHHHHHHHHHHT--TCHHHHHHHHHHHHHCSSSCCCHHHHH
T ss_pred ccCHHHHHHHHHHHHcCCC--Hhhh--HHHHHHcCCCHHHHHHHHHHHHcC--CCHHHHHHHHHHHHcCCCCCccHHHHH
Confidence 4678999999999998763 4455 999999999999999999999887 689999999999999 89999999
Q ss_pred HHHHHHHhhCCCChHHHHHHHHHHHhhhcccccccccchhhhhHHHhcCCHHHHHHHHHHHHhcCCCCHHHHHHHH
Q 012143 221 KCFQDLILKDQNHPAALINYAALLLCKYGSVLAGAGANTGEGACLDQASAVNVAKECLLAALKADPKAAHIWANLA 296 (470)
Q Consensus 221 ~~~~~~l~~~p~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~la 296 (470)
.+|+++.+. .++.+.+.++.++..-.+ -.+++++|+.+|+++.+.. ++.+...++
T Consensus 82 ~~~~~Aa~~--g~~~a~~~Lg~~y~~G~g-----------------~~~d~~~A~~~~~~Aa~~g--~~~A~~~l~ 136 (138)
T 1klx_A 82 QYYSKACGL--NDQDGCLILGYKQYAGKG-----------------VVKNEKQAVKTFEKACRLG--SEDACGILN 136 (138)
T ss_dssp HHHHHHHHT--TCHHHHHHHHHHHHHTSS-----------------SCCCHHHHHHHHHHHHHTT--CHHHHHHC-
T ss_pred HHHHHHHcC--CCHHHHHHHHHHHHCCCC-----------------CCcCHHHHHHHHHHHHHCC--CHHHHHHHh
Confidence 999999876 688999999988872100 1789999999999999874 455555544
|
| >2kc7_A BFR218_protein; tetratricopeptide repeat, all-alpha, GFT-structural genomics, PSI-2, protein structure initiative; NMR {Bacteroides fragilis} | Back alignment and structure |
|---|
Probab=99.11 E-value=1e-10 Score=83.90 Aligned_cols=69 Identities=22% Similarity=0.318 Sum_probs=62.5
Q ss_pred HHHHHHHHHcCChHHHHHHHHHHhhcCCCChH-HHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCChHHHH
Q 012143 170 NTLGLILLKSGRLQSSISVLSSLLAVDPNNCD-CIGNLGIAYFQSGDMEQSAKCFQDLILKDQNHPAALI 238 (470)
Q Consensus 170 ~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~-~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~ 238 (470)
+.+|.++...|++++|+..|+++++.+|+++. +++.+|.++...|++++|+..|++++.++|++..++.
T Consensus 4 ~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~ 73 (99)
T 2kc7_A 4 LKTIKELINQGDIENALQALEEFLQTEPVGKDEAYYLMGNAYRKLGDWQKALNNYQSAIELNPDSPALQA 73 (99)
T ss_dssp HHHHHHHHHHTCHHHHHHHHHHHHHHCSSTHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTSTHHHH
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHHCCCcHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCcHHHHH
Confidence 56788899999999999999999999999998 9999999999999999999999999999999887763
|
| >3ma5_A Tetratricopeptide repeat domain protein; NESG, structural genomics, PSI-2, protein structure initiative; 2.80A {Salinibacter ruber} PDB: 2kcl_A 2kcv_A | Back alignment and structure |
|---|
Probab=99.11 E-value=5e-10 Score=80.29 Aligned_cols=70 Identities=11% Similarity=0.150 Sum_probs=42.0
Q ss_pred CCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCChHHHHHHHHHHHhhhcccccccccchhhhhHHHhcCCHHHHH
Q 012143 196 DPNNCDCIGNLGIAYFQSGDMEQSAKCFQDLILKDQNHPAALINYAALLLCKYGSVLAGAGANTGEGACLDQASAVNVAK 275 (470)
Q Consensus 196 ~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~ 275 (470)
+|+++.+++.+|.++...|++++|+..|+++++.+|+++.++..+|.++. ..|++++|+
T Consensus 3 ~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~---------------------~~g~~~~A~ 61 (100)
T 3ma5_A 3 DPEDPFTRYALAQEHLKHDNASRALALFEELVETDPDYVGTYYHLGKLYE---------------------RLDRTDDAI 61 (100)
T ss_dssp --CCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCTHHHHHHHHHHH---------------------HTTCHHHHH
T ss_pred CccCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHH---------------------HcCCHHHHH
Confidence 45666666666666666666666666666666666666666666555554 466666666
Q ss_pred HHHHHHHhcCC
Q 012143 276 ECLLAALKADP 286 (470)
Q Consensus 276 ~~~~~~~~~~p 286 (470)
..|++++++.|
T Consensus 62 ~~~~~al~l~~ 72 (100)
T 3ma5_A 62 DTYAQGIEVAR 72 (100)
T ss_dssp HHHHHHHHHHH
T ss_pred HHHHHHHhhhh
Confidence 66666665543
|
| >2kc7_A BFR218_protein; tetratricopeptide repeat, all-alpha, GFT-structural genomics, PSI-2, protein structure initiative; NMR {Bacteroides fragilis} | Back alignment and structure |
|---|
Probab=99.08 E-value=2.7e-10 Score=81.64 Aligned_cols=91 Identities=10% Similarity=0.040 Sum_probs=72.9
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHHHhhCCCChH-HHHHHHHHHHhhhcccccccccchhhhhHHHhcCCHHHHHHHHHHHH
Q 012143 204 GNLGIAYFQSGDMEQSAKCFQDLILKDQNHPA-ALINYAALLLCKYGSVLAGAGANTGEGACLDQASAVNVAKECLLAAL 282 (470)
Q Consensus 204 ~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~-~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~ 282 (470)
+..|.++...|++++|+..|+++++.+|+++. ++..+|.++. ..|++++|+..|++++
T Consensus 4 ~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~lg~~~~---------------------~~~~~~~A~~~~~~al 62 (99)
T 2kc7_A 4 LKTIKELINQGDIENALQALEEFLQTEPVGKDEAYYLMGNAYR---------------------KLGDWQKALNNYQSAI 62 (99)
T ss_dssp HHHHHHHHHHTCHHHHHHHHHHHHHHCSSTHHHHHHHHHHHHH---------------------HHTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHHCCCcHHHHHHHHHHHHH---------------------HcCCHHHHHHHHHHHH
Confidence 56788888888888888888888888888888 8888877776 6888888888888888
Q ss_pred hcCCCCHHHHHHHHHHHHHcCChhHHHHHHHHHHhcCCCcc
Q 012143 283 KADPKAAHIWANLANAYYLTGDHRSSGKCLEKAAKLEPNCM 323 (470)
Q Consensus 283 ~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~p~~~ 323 (470)
+.+|+++.++.. +.+.+++..|+++...+|++.
T Consensus 63 ~~~p~~~~~~~~--------~~~~~a~~~~~~~~~~~p~~~ 95 (99)
T 2kc7_A 63 ELNPDSPALQAR--------KMVMDILNFYNKDMYNQLEHH 95 (99)
T ss_dssp HHCTTSTHHHHH--------HHHHHHHHHHCCTTHHHHCCS
T ss_pred hcCCCcHHHHHH--------HHHHHHHHHHHHHhccCcccc
Confidence 888888877644 566777777877777776654
|
| >3ly7_A Transcriptional activator CADC; alpha/beta domain, alpha domain, DNA-binding, transcription regulation, transmembrane; 1.80A {Escherichia coli} PDB: 3lya_A 3ly8_A 3ly9_A | Back alignment and structure |
|---|
Probab=99.07 E-value=6.2e-09 Score=90.95 Aligned_cols=144 Identities=11% Similarity=0.073 Sum_probs=111.1
Q ss_pred hhcCccchHHH--HHHHHHHHHcCC---hHHHHHHHHHHhhcCCCChHHHHHHHHHHHHcCC----HHHHHH----HHH-
Q 012143 159 MQSDTRQAVVW--NTLGLILLKSGR---LQSSISVLSSLLAVDPNNCDCIGNLGIAYFQSGD----MEQSAK----CFQ- 224 (470)
Q Consensus 159 ~~~~p~~~~~~--~~l~~~~~~~~~---~~~A~~~~~~a~~~~~~~~~~~~~la~~~~~~g~----~~~A~~----~~~- 224 (470)
....|.++.+| +..|..+...+. ..+|+.+|+++++++|+++.++..++.+|..... ...... .++
T Consensus 187 ~~~~p~~~~Aydl~Lra~~~l~~~~~~~~~~A~~l~e~Al~lDP~~a~A~A~la~a~~~~~~~~~~~~~~~~~l~~a~~a 266 (372)
T 3ly7_A 187 QKILPHRGALLTNFYQAHDYLLHGDDKSLNRASELLGEIVQSSPEFTYARAEKALVDIVRHSQHPLDEKQLAALNTEIDN 266 (372)
T ss_dssp HHHSCSSGGGHHHHHHHHHHHHHCSHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHH
T ss_pred hccCCCCHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHhccCCCchhhHHHHHHHHHH
Confidence 34456666654 446676666554 5889999999999999999999999888863211 111111 222
Q ss_pred -HHHhhCCCChHHHHHHHHHHHhhhcccccccccchhhhhHHHhcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcC
Q 012143 225 -DLILKDQNHPAALINYAALLLCKYGSVLAGAGANTGEGACLDQASAVNVAKECLLAALKADPKAAHIWANLANAYYLTG 303 (470)
Q Consensus 225 -~~l~~~p~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~la~~~~~~g 303 (470)
.++..+|.++.++..++..+. ..|++++|+..+++++.++|+ ...+..+|.++...|
T Consensus 267 ~~a~~~~~~~a~~~~alal~~l---------------------~~gd~d~A~~~l~rAl~Ln~s-~~a~~llG~~~~~~G 324 (372)
T 3ly7_A 267 IVTLPELNNLSIIYQIKAVSAL---------------------VKGKTDESYQAINTGIDLEMS-WLNYVLLGKVYEMKG 324 (372)
T ss_dssp HHTCGGGTTCHHHHHHHHHHHH---------------------HHTCHHHHHHHHHHHHHHCCC-HHHHHHHHHHHHHTT
T ss_pred HHhcccCCcCHHHHHHHHHHHH---------------------hCCCHHHHHHHHHHHHhcCCC-HHHHHHHHHHHHHCC
Confidence 223567888888888877766 579999999999999999975 778899999999999
Q ss_pred ChhHHHHHHHHHHhcCCCccc
Q 012143 304 DHRSSGKCLEKAAKLEPNCMS 324 (470)
Q Consensus 304 ~~~~A~~~~~~a~~~~p~~~~ 324 (470)
++++|++.|++++.++|....
T Consensus 325 ~~~eA~e~~~~AlrL~P~~~t 345 (372)
T 3ly7_A 325 MNREAADAYLTAFNLRPGANT 345 (372)
T ss_dssp CHHHHHHHHHHHHHHSCSHHH
T ss_pred CHHHHHHHHHHHHhcCCCcCh
Confidence 999999999999999998753
|
| >1klx_A Cysteine rich protein B; structural genomics, helix-turn-helix, right handed super helix, modular structure', hydrolase; 1.95A {Helicobacter pylori} SCOP: a.118.18.1 | Back alignment and structure |
|---|
Probab=99.03 E-value=6.2e-09 Score=79.41 Aligned_cols=116 Identities=11% Similarity=-0.000 Sum_probs=100.4
Q ss_pred CChHHHHHHHHHHhhcCCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCChHHHHHHHHHHHhhhcccccccccch
Q 012143 180 GRLQSSISVLSSLLAVDPNNCDCIGNLGIAYFQSGDMEQSAKCFQDLILKDQNHPAALINYAALLLCKYGSVLAGAGANT 259 (470)
Q Consensus 180 ~~~~~A~~~~~~a~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~l~~~~~~~~~~~~~~~~~~~ 259 (470)
+++++|+.+|+++.+..+ +.+. +|.+|...+.+++|+.+|+++.+. .++.+++.+|.++..-.+
T Consensus 9 ~d~~~A~~~~~~aa~~g~--~~a~--lg~~y~~g~~~~~A~~~~~~Aa~~--g~~~a~~~Lg~~y~~G~g---------- 72 (138)
T 1klx_A 9 KDLKKAIQYYVKACELNE--MFGC--LSLVSNSQINKQKLFQYLSKACEL--NSGNGCRFLGDFYENGKY---------- 72 (138)
T ss_dssp HHHHHHHHHHHHHHHTTC--TTHH--HHHHTCTTSCHHHHHHHHHHHHHT--TCHHHHHHHHHHHHHCSS----------
T ss_pred cCHHHHHHHHHHHHcCCC--Hhhh--HHHHHHcCCCHHHHHHHHHHHHcC--CCHHHHHHHHHHHHcCCC----------
Confidence 468999999999998864 4444 999999999999999999999886 688999999998873100
Q ss_pred hhhhHHHhcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHH----cCChhHHHHHHHHHHhcCC
Q 012143 260 GEGACLDQASAVNVAKECLLAALKADPKAAHIWANLANAYYL----TGDHRSSGKCLEKAAKLEP 320 (470)
Q Consensus 260 ~~~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~la~~~~~----~g~~~~A~~~~~~a~~~~p 320 (470)
-.+++++|+.+|+++.+. .++.++.++|.+|.. .+++++|+.+|+++.+...
T Consensus 73 -------~~~d~~~A~~~~~~Aa~~--g~~~a~~~Lg~~y~~G~g~~~d~~~A~~~~~~Aa~~g~ 128 (138)
T 1klx_A 73 -------VKKDLRKAAQYYSKACGL--NDQDGCLILGYKQYAGKGVVKNEKQAVKTFEKACRLGS 128 (138)
T ss_dssp -------SCCCHHHHHHHHHHHHHT--TCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTTC
T ss_pred -------CCccHHHHHHHHHHHHcC--CCHHHHHHHHHHHHCCCCCCcCHHHHHHHHHHHHHCCC
Confidence 178999999999999986 679999999999999 9999999999999998753
|
| >3ly7_A Transcriptional activator CADC; alpha/beta domain, alpha domain, DNA-binding, transcription regulation, transmembrane; 1.80A {Escherichia coli} PDB: 3lya_A 3ly8_A 3ly9_A | Back alignment and structure |
|---|
Probab=99.02 E-value=2.8e-08 Score=86.87 Aligned_cols=155 Identities=8% Similarity=-0.008 Sum_probs=112.2
Q ss_pred HHhcCCCCcchh--hhcccchhhh---hcChhhHHHHHHHHHHhCCCChhHHHHHHHHHHHhCChhHHHHHHHHHHHHHh
Q 012143 32 ALEFGVDADGDQ--SGLGTSSSSR---EEKVSSLKTGLVHVARKMPKNAHAHFLLGLMYQRLGQPLKAVSSYEKAEEILL 106 (470)
Q Consensus 32 ~l~~~p~~~~~~--~~~~~~~~~~---~~~~~~A~~~~~~~l~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~ 106 (470)
+....|.+..+| +..|.. +.. ...+.+|+.+|+++++.+|+++.++..++.+|...... .|
T Consensus 186 ~~~~~p~~~~Aydl~Lra~~-~l~~~~~~~~~~A~~l~e~Al~lDP~~a~A~A~la~a~~~~~~~-------------~~ 251 (372)
T 3ly7_A 186 LQKILPHRGALLTNFYQAHD-YLLHGDDKSLNRASELLGEIVQSSPEFTYARAEKALVDIVRHSQ-------------HP 251 (372)
T ss_dssp HHHHSCSSGGGHHHHHHHHH-HHHHCSHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHHH-------------SC
T ss_pred HhccCCCCHHHHHHHHHHHH-HHHcCCHHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHhcc-------------CC
Confidence 334456665544 455555 443 34567888888899989998888888888888621000 00
Q ss_pred hhhcccchhhhHHHHHHhhhccccccccCCCccccccCcccHHHHHHHHHHhhhcCccchHHHHHHHHHHHHcCChHHHH
Q 012143 107 RCEADIARPELLSLVQIHHAQCLLPESSGDNSLDKELEPEELEEILSKLKESMQSDTRQAVVWNTLGLILLKSGRLQSSI 186 (470)
Q Consensus 107 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~~~~~~A~ 186 (470)
.+ ... ......+... ..++..+|.++.++..++..+...|++++|+
T Consensus 252 ~~------~~~---------------------------~~~l~~a~~a-~~a~~~~~~~a~~~~alal~~l~~gd~d~A~ 297 (372)
T 3ly7_A 252 LD------EKQ---------------------------LAALNTEIDN-IVTLPELNNLSIIYQIKAVSALVKGKTDESY 297 (372)
T ss_dssp CC------HHH---------------------------HHHHHHHHHH-HHTCGGGTTCHHHHHHHHHHHHHHTCHHHHH
T ss_pred Cc------hhh---------------------------HHHHHHHHHH-HHhcccCCcCHHHHHHHHHHHHhCCCHHHHH
Confidence 00 000 0001233331 2355678999999999999999999999999
Q ss_pred HHHHHHhhcCCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCChH
Q 012143 187 SVLSSLLAVDPNNCDCIGNLGIAYFQSGDMEQSAKCFQDLILKDQNHPA 235 (470)
Q Consensus 187 ~~~~~a~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~ 235 (470)
..+++++.++|+ ..++..+|.++...|++++|++.|.+++.++|..+.
T Consensus 298 ~~l~rAl~Ln~s-~~a~~llG~~~~~~G~~~eA~e~~~~AlrL~P~~~t 345 (372)
T 3ly7_A 298 QAINTGIDLEMS-WLNYVLLGKVYEMKGMNREAADAYLTAFNLRPGANT 345 (372)
T ss_dssp HHHHHHHHHCCC-HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSCSHHH
T ss_pred HHHHHHHhcCCC-HHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCcCh
Confidence 999999999975 678899999999999999999999999999998764
|
| >3n71_A Histone lysine methyltransferase SMYD1; heart development, transcription; HET: SFG MES; 2.30A {Mus musculus} | Back alignment and structure |
|---|
Probab=99.00 E-value=1.7e-09 Score=100.50 Aligned_cols=127 Identities=9% Similarity=-0.009 Sum_probs=102.9
Q ss_pred HHHHHHHcCChHHHHHHHHHHhhc-----CCCC---hHHHHHHHHHHHHcCCHHHHHHHHHHHHhh-----CCCChHH--
Q 012143 172 LGLILLKSGRLQSSISVLSSLLAV-----DPNN---CDCIGNLGIAYFQSGDMEQSAKCFQDLILK-----DQNHPAA-- 236 (470)
Q Consensus 172 l~~~~~~~~~~~~A~~~~~~a~~~-----~~~~---~~~~~~la~~~~~~g~~~~A~~~~~~~l~~-----~p~~~~~-- 236 (470)
.+..+..+|+|++|+..+++++++ .|++ ..++.++|.+|..+|+|++|+.++++++.+ .|+++..
T Consensus 315 ~a~~~~~qg~~~eA~~l~~~aL~~~~~~lg~~Hp~~a~~~~nLa~~y~~~g~~~eA~~~~~~aL~i~~~~lG~~Hp~~a~ 394 (490)
T 3n71_A 315 KIDKARSEGLYHEVVKLCRECLEKQEPVFADTNLYVLRLLSIASEVLSYLQAYEEASHYARRMVDGYMKLYHHNNAQLGM 394 (490)
T ss_dssp HHHHHHTTTCHHHHHHHHHHHHHHHTTTBCTTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHSCTTCHHHHH
T ss_pred HHHHHHhCCCHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHcCCCCHHHHH
Confidence 445577899999999999999975 4444 457899999999999999999999999965 4666554
Q ss_pred -HHHHHHHHHhhhcccccccccchhhhhHHHhcCCHHHHHHHHHHHHhc-----CCCC---HHHHHHHHHHHHHcCChhH
Q 012143 237 -LINYAALLLCKYGSVLAGAGANTGEGACLDQASAVNVAKECLLAALKA-----DPKA---AHIWANLANAYYLTGDHRS 307 (470)
Q Consensus 237 -~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~-----~p~~---~~~~~~la~~~~~~g~~~~ 307 (470)
+.++|.++ ...|++++|+.+|++++++ .|++ ......++.++..++.+++
T Consensus 395 ~l~nLa~~~---------------------~~~G~~~eA~~~~~~Al~i~~~~lG~~Hp~~~~~~~~l~~~~~e~~~~~~ 453 (490)
T 3n71_A 395 AVMRAGLTN---------------------WHAGHIEVGHGMICKAYAILLVTHGPSHPITKDLEAMRMQTEMELRMFRQ 453 (490)
T ss_dssp HHHHHHHHH---------------------HHTTCHHHHHHHHHHHHHHHHHHTCTTSHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHH---------------------HHCCCHHHHHHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHHHHHHHH
Confidence 44555554 4899999999999999975 4554 4556788999999999999
Q ss_pred HHHHHHHHHhcC
Q 012143 308 SGKCLEKAAKLE 319 (470)
Q Consensus 308 A~~~~~~a~~~~ 319 (470)
|...|.++.+..
T Consensus 454 ae~~~~~~~~~~ 465 (490)
T 3n71_A 454 NEFMYHKMREAA 465 (490)
T ss_dssp HHHHHHHHHHHH
T ss_pred HHHHHHHHHHHH
Confidence 999999986543
|
| >3u64_A Protein TP_0956; tetratrico peptide repeat, protein-prote interaction, syphilis, lipoprotein, transport protein; 2.30A {Treponema pallidum subsp} PDB: 4di3_A 4di4_A* | Back alignment and structure |
|---|
Probab=98.99 E-value=1.9e-08 Score=84.07 Aligned_cols=158 Identities=7% Similarity=0.024 Sum_probs=116.6
Q ss_pred HHHHHHHHHhhhcCccchHHHHHHHHHHHHc---------------------CChHHHHHHHHHHhh-------------
Q 012143 149 EEILSKLKESMQSDTRQAVVWNTLGLILLKS---------------------GRLQSSISVLSSLLA------------- 194 (470)
Q Consensus 149 ~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~---------------------~~~~~A~~~~~~a~~------------- 194 (470)
.-.+.+++-.+..+|++...+...|..|..- .++..|...|.++.+
T Consensus 49 P~~Lk~~e~Ll~~~P~~~~Ll~~~a~ly~~Ya~afV~~~a~~~~~~~~~~~~~~~~RA~~Ly~ra~~y~~raL~~~~~~~ 128 (301)
T 3u64_A 49 PLVLKVYEALHLQNPAHRGLSLAVGRLYIMYANAFVQTPAQYLPEDEFEAQNEAYSRARKLYLRGARYALSSLETAYPGF 128 (301)
T ss_dssp HHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHHHHTHHHHHTSCGGGHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSTTH
T ss_pred cHHHHHHHHHHhhCCCCHHHHHHHHHHHHHHHHHHhcCchhhcchhhHhhhhhhHHHHHHHHHHHHHHHHHHHHHhCccH
Confidence 5566777888889999977665555444321 124455666555432
Q ss_pred ------------------cCCCChHHHHHHHHHHHH-----cC------CHHHHHHHHHHHHhhCCC--ChHHHHHHHHH
Q 012143 195 ------------------VDPNNCDCIGNLGIAYFQ-----SG------DMEQSAKCFQDLILKDQN--HPAALINYAAL 243 (470)
Q Consensus 195 ------------------~~~~~~~~~~~la~~~~~-----~g------~~~~A~~~~~~~l~~~p~--~~~~~~~l~~~ 243 (470)
.+|++++.++..|.+... .| ....|...++++++++|+ +..++..+|.+
T Consensus 129 ~~~~~~~~~~~~~~~l~~~~~~dve~L~W~ai~~ss~a~~~~gg~~Al~~l~~A~a~lerAleLDP~~~~GsA~~~LG~l 208 (301)
T 3u64_A 129 TREVFSGDEQRLHKVLSRCTRVDVGTLYWVGTGYVAAFALTPLGSALPDTVHAAVMMLERACDLWPSYQEGAVWNVLTKF 208 (301)
T ss_dssp HHHHTSSCHHHHHHHHTTCCGGGHHHHHHHHHHHHHHHTTSCTTSCCHHHHHHHHHHHHHHHHHCTTHHHHHHHHHHHHH
T ss_pred HHHHHhcchhhHHHHHHHcCccccHHHHHHHHHHHHHHhcCCCChHHHHhHHHHHHHHHHHHHhCCCcccCHHHHHHHHH
Confidence 134456666666655532 23 357899999999999999 66689988888
Q ss_pred HHhhhcccccccccchhhhhHHHhcCCHHHHHHHHHHHHhcCCCC-HHHHHHHHHHHHH-cCChhHHHHHHHHHHhcCCC
Q 012143 244 LLCKYGSVLAGAGANTGEGACLDQASAVNVAKECLLAALKADPKA-AHIWANLANAYYL-TGDHRSSGKCLEKAAKLEPN 321 (470)
Q Consensus 244 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~p~~-~~~~~~la~~~~~-~g~~~~A~~~~~~a~~~~p~ 321 (470)
|..... ..-|+.++|..+|+++++++|+. ..+++..|..+.. .|++++|..++++++...|.
T Consensus 209 Y~~vPp----------------~~gGd~ekA~~~ferAL~LnP~~~id~~v~YA~~l~~~~gd~~~a~~~L~kAL~a~p~ 272 (301)
T 3u64_A 209 YAAAPE----------------SFGGGMEKAHTAFEHLTRYCSAHDPDHHITYADALCIPLNNRAGFDEALDRALAIDPE 272 (301)
T ss_dssp HHHSCT----------------TTTCCHHHHHHHHHHHHHHCCTTCSHHHHHHHHHTTTTTTCHHHHHHHHHHHHHCCGG
T ss_pred HHhCCC----------------ccCCCHHHHHHHHHHHHHhCCCCCchHHHHHHHHHHHhcCCHHHHHHHHHHHHcCCCC
Confidence 872100 01499999999999999999975 9999999999988 49999999999999999888
Q ss_pred c
Q 012143 322 C 322 (470)
Q Consensus 322 ~ 322 (470)
.
T Consensus 273 ~ 273 (301)
T 3u64_A 273 S 273 (301)
T ss_dssp G
T ss_pred C
Confidence 4
|
| >3bee_A Putative YFRE protein; putaive YFRE protein, structural GE PSI-2, protein structure initiative; 2.15A {Vibrio parahaemolyticus rimd 2210633} | Back alignment and structure |
|---|
Probab=98.97 E-value=6.9e-09 Score=72.39 Aligned_cols=73 Identities=12% Similarity=0.101 Sum_probs=68.7
Q ss_pred CccchHHHHHHHHHHHHcCC---hHHHHHHHHHHhhcCCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCh
Q 012143 162 DTRQAVVWNTLGLILLKSGR---LQSSISVLSSLLAVDPNNCDCIGNLGIAYFQSGDMEQSAKCFQDLILKDQNHP 234 (470)
Q Consensus 162 ~p~~~~~~~~l~~~~~~~~~---~~~A~~~~~~a~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~ 234 (470)
+|+++.++..+|.+++..++ .++|...++++++.+|+++.+++.+|..++..|+|++|+..|+++++.+|..+
T Consensus 2 ~p~~~~~~~~~a~al~~~~~~~~~~~A~~~l~~AL~~dp~~~rA~~~lg~~~~~~g~y~~Ai~~w~~~l~~~p~~~ 77 (93)
T 3bee_A 2 NAVTATQLAAKATTLYYLHKQAMTDEVSLLLEQALQLEPYNEAALSLIANDHFISFRFQEAIDTWVLLLDSNDPNL 77 (93)
T ss_dssp CCCCHHHHHHHHHHHHHTTTTCCCHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTCCCTTC
T ss_pred CCCCHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHCcCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCc
Confidence 68999999999999987766 79999999999999999999999999999999999999999999999999843
|
| >1pc2_A Mitochondria fission protein; unknown function; NMR {Homo sapiens} SCOP: a.118.8.1 | Back alignment and structure |
|---|
Probab=98.96 E-value=5.8e-09 Score=78.49 Aligned_cols=103 Identities=15% Similarity=0.168 Sum_probs=91.6
Q ss_pred ccCcccHHHHHHHHHHhhhcCccchHHHHHHHHHHHHcC---ChHHHHHHHHHHhhcC-C-CChHHHHHHHHHHHHcCCH
Q 012143 142 ELEPEELEEILSKLKESMQSDTRQAVVWNTLGLILLKSG---RLQSSISVLSSLLAVD-P-NNCDCIGNLGIAYFQSGDM 216 (470)
Q Consensus 142 ~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~~---~~~~A~~~~~~a~~~~-~-~~~~~~~~la~~~~~~g~~ 216 (470)
....+....+.+.|.+.+..+|.+.++.+.+|.++.+.+ +.++++..++.+++.+ | +..++++.+|..++++|+|
T Consensus 8 ~l~~~~l~~~~~~y~~e~~~~~~~~~~~F~ya~~Lv~S~~~~~~~~gI~lLe~ll~~~~p~~~rd~lY~LAv~~~kl~~Y 87 (152)
T 1pc2_A 8 LVSVEDLLKFEKKFQSEKAAGSVSKSTQFEYAWCLVRSKYNDDIRKGIVLLEELLPKGSKEEQRDYVFYLAVGNYRLKEY 87 (152)
T ss_dssp SCCHHHHHHHHHHHHHHHHTTCCCHHHHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHTSCH
T ss_pred cCCHHHHHHHHHHHHHHHccCCCcHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcCCccchHHHHHHHHHHHHHccCH
Confidence 456677789999999999989999999999999999998 6679999999999998 7 5689999999999999999
Q ss_pred HHHHHHHHHHHhhCCCChHHHHHHHHHH
Q 012143 217 EQSAKCFQDLILKDQNHPAALINYAALL 244 (470)
Q Consensus 217 ~~A~~~~~~~l~~~p~~~~~~~~l~~~~ 244 (470)
++|+.+++++++.+|++..+......+-
T Consensus 88 ~~A~~y~~~lL~ieP~n~QA~~Lk~~ie 115 (152)
T 1pc2_A 88 EKALKYVRGLLQTEPQNNQAKELERLID 115 (152)
T ss_dssp HHHHHHHHHHHHHCTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhcCCCCHHHHHHHHHHH
Confidence 9999999999999999998876554443
|
| >3n71_A Histone lysine methyltransferase SMYD1; heart development, transcription; HET: SFG MES; 2.30A {Mus musculus} | Back alignment and structure |
|---|
Probab=98.93 E-value=2.7e-09 Score=99.19 Aligned_cols=125 Identities=10% Similarity=0.022 Sum_probs=100.3
Q ss_pred ccCcccHHHHHHHHHHhhhc--------CccchHHHHHHHHHHHHcCChHHHHHHHHHHhhc-----CCCC---hHHHHH
Q 012143 142 ELEPEELEEILSKLKESMQS--------DTRQAVVWNTLGLILLKSGRLQSSISVLSSLLAV-----DPNN---CDCIGN 205 (470)
Q Consensus 142 ~~~~~~~~~A~~~~~~~~~~--------~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~-----~~~~---~~~~~~ 205 (470)
+..+|++++|+..+++++.. +|....++.++|.+|..+|+|++|+.++++++++ .|++ ...+.+
T Consensus 319 ~~~qg~~~eA~~l~~~aL~~~~~~lg~~Hp~~a~~~~nLa~~y~~~g~~~eA~~~~~~aL~i~~~~lG~~Hp~~a~~l~n 398 (490)
T 3n71_A 319 ARSEGLYHEVVKLCRECLEKQEPVFADTNLYVLRLLSIASEVLSYLQAYEEASHYARRMVDGYMKLYHHNNAQLGMAVMR 398 (490)
T ss_dssp HHTTTCHHHHHHHHHHHHHHHTTTBCTTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHSCTTCHHHHHHHHH
T ss_pred HHhCCCHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHH
Confidence 44789999999999999874 3444568889999999999999999999999975 4444 557899
Q ss_pred HHHHHHHcCCHHHHHHHHHHHHhh-----CCCChHHHHHHHHHHHhhhcccccccccchhhhhHHHhcCCHHHHHHHHHH
Q 012143 206 LGIAYFQSGDMEQSAKCFQDLILK-----DQNHPAALINYAALLLCKYGSVLAGAGANTGEGACLDQASAVNVAKECLLA 280 (470)
Q Consensus 206 la~~~~~~g~~~~A~~~~~~~l~~-----~p~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~ 280 (470)
+|.+|..+|++++|+..|++++.+ .|+++.....+.. ++.++...+.+++|...|.+
T Consensus 399 La~~~~~~G~~~eA~~~~~~Al~i~~~~lG~~Hp~~~~~~~~------------------l~~~~~e~~~~~~ae~~~~~ 460 (490)
T 3n71_A 399 AGLTNWHAGHIEVGHGMICKAYAILLVTHGPSHPITKDLEAM------------------RMQTEMELRMFRQNEFMYHK 460 (490)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHHHHHTCTTSHHHHHHHHH------------------HHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHCCCHHHHHHHHHHHHHHHHHHhCCCChHHHHHHHH------------------HHHHHHHHHHHHHHHHHHHH
Confidence 999999999999999999999964 6777766443321 23445578889999999988
Q ss_pred HHhc
Q 012143 281 ALKA 284 (470)
Q Consensus 281 ~~~~ 284 (470)
+.+.
T Consensus 461 ~~~~ 464 (490)
T 3n71_A 461 MREA 464 (490)
T ss_dssp HHHH
T ss_pred HHHH
Confidence 7653
|
| >3bee_A Putative YFRE protein; putaive YFRE protein, structural GE PSI-2, protein structure initiative; 2.15A {Vibrio parahaemolyticus rimd 2210633} | Back alignment and structure |
|---|
Probab=98.78 E-value=8.8e-08 Score=66.74 Aligned_cols=77 Identities=12% Similarity=0.054 Sum_probs=66.7
Q ss_pred CCCChHHHHHHHHHHHhhhcccccccccchhhhhHHHhcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCChhHHH
Q 012143 230 DQNHPAALINYAALLLCKYGSVLAGAGANTGEGACLDQASAVNVAKECLLAALKADPKAAHIWANLANAYYLTGDHRSSG 309 (470)
Q Consensus 230 ~p~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~la~~~~~~g~~~~A~ 309 (470)
+|+++..+..+|.++.... .....++|...++++++.+|+++.++..+|..++..|+|++|+
T Consensus 2 ~p~~~~~~~~~a~al~~~~------------------~~~~~~~A~~~l~~AL~~dp~~~rA~~~lg~~~~~~g~y~~Ai 63 (93)
T 3bee_A 2 NAVTATQLAAKATTLYYLH------------------KQAMTDEVSLLLEQALQLEPYNEAALSLIANDHFISFRFQEAI 63 (93)
T ss_dssp CCCCHHHHHHHHHHHHHTT------------------TTCCCHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHH
T ss_pred CCCCHHHHHHHHHHHHHhc------------------CCCCCHHHHHHHHHHHHHCcCCHHHHHHHHHHHHHcCCHHHHH
Confidence 6889999999998886310 1122799999999999999999999999999999999999999
Q ss_pred HHHHHHHhcCCCccc
Q 012143 310 KCLEKAAKLEPNCMS 324 (470)
Q Consensus 310 ~~~~~a~~~~p~~~~ 324 (470)
.++++++..+|.++.
T Consensus 64 ~~w~~~l~~~p~~~~ 78 (93)
T 3bee_A 64 DTWVLLLDSNDPNLD 78 (93)
T ss_dssp HHHHHHHTCCCTTCC
T ss_pred HHHHHHHhhCCCCcc
Confidence 999999999999443
|
| >2v5f_A Prolyl 4-hydroxylase subunit alpha-1; endoplasmic reticulum, metal-binding, oxidoreductase; 2.03A {Homo sapiens} PDB: 1tjc_A | Back alignment and structure |
|---|
Probab=98.73 E-value=1.3e-07 Score=67.91 Aligned_cols=77 Identities=18% Similarity=0.162 Sum_probs=69.3
Q ss_pred chHHHHHHHHHHHHcCChHHHHHHHHHHhhcC-------CCChHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCChHHH
Q 012143 165 QAVVWNTLGLILLKSGRLQSSISVLSSLLAVD-------PNNCDCIGNLGIAYFQSGDMEQSAKCFQDLILKDQNHPAAL 237 (470)
Q Consensus 165 ~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~-------~~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~ 237 (470)
++.-.+.+|..++..|+|..|+.+|+++++.. +..+.++..+|.++.++|+++.|+..+++++.++|++..+.
T Consensus 4 sa~dc~~lG~~~~~~~~y~~A~~W~~~Al~~~~~~~~~~~~~~~i~~~L~~~~~~~g~~~~A~~~~~~al~l~P~~~~~~ 83 (104)
T 2v5f_A 4 TAEDCFELGKVAYTEADYYHTELWMEQALRQLDEGEISTIDKVSVLDYLSYAVYQQGDLDKALLLTKKLLELDPEHQRAN 83 (104)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTTCCCSSCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHH
T ss_pred CHHHHHHHHHHHHHccchHHHHHHHHHHHHhhhccCCCcccHHHHHHHHHHHHHHccCHHHHHHHHHHHHhcCCCCHHHH
Confidence 35667899999999999999999999999863 34578999999999999999999999999999999999987
Q ss_pred HHHH
Q 012143 238 INYA 241 (470)
Q Consensus 238 ~~l~ 241 (470)
.++.
T Consensus 84 ~n~~ 87 (104)
T 2v5f_A 84 GNLK 87 (104)
T ss_dssp HHHH
T ss_pred hhHH
Confidence 7776
|
| >1pc2_A Mitochondria fission protein; unknown function; NMR {Homo sapiens} SCOP: a.118.8.1 | Back alignment and structure |
|---|
Probab=98.71 E-value=1.8e-07 Score=70.43 Aligned_cols=96 Identities=11% Similarity=0.031 Sum_probs=82.7
Q ss_pred hHHHHHHHHHHhhcCCCChHHHHHHHHHHHHcC---CHHHHHHHHHHHHhhC-C-CChHHHHHHHHHHHhhhcccccccc
Q 012143 182 LQSSISVLSSLLAVDPNNCDCIGNLGIAYFQSG---DMEQSAKCFQDLILKD-Q-NHPAALINYAALLLCKYGSVLAGAG 256 (470)
Q Consensus 182 ~~~A~~~~~~a~~~~~~~~~~~~~la~~~~~~g---~~~~A~~~~~~~l~~~-p-~~~~~~~~l~~~~~~~~~~~~~~~~ 256 (470)
...+.+.|.+.+..+|.+.++.+++|+++.+.+ +.++++..++.+++.+ | .+.+.++.++..+.
T Consensus 14 l~~~~~~y~~e~~~~~~~~~~~F~ya~~Lv~S~~~~~~~~gI~lLe~ll~~~~p~~~rd~lY~LAv~~~----------- 82 (152)
T 1pc2_A 14 LLKFEKKFQSEKAAGSVSKSTQFEYAWCLVRSKYNDDIRKGIVLLEELLPKGSKEEQRDYVFYLAVGNY----------- 82 (152)
T ss_dssp HHHHHHHHHHHHHTTCCCHHHHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHH-----------
T ss_pred HHHHHHHHHHHHccCCCcHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcCCccchHHHHHHHHHHHH-----------
Confidence 456778888888888999999999999999988 6779999999999998 7 56788888888876
Q ss_pred cchhhhhHHHhcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHH
Q 012143 257 ANTGEGACLDQASAVNVAKECLLAALKADPKAAHIWANLANA 298 (470)
Q Consensus 257 ~~~~~~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~la~~ 298 (470)
+.|+|++|..+++++++++|++..+....-.+
T Consensus 83 ----------kl~~Y~~A~~y~~~lL~ieP~n~QA~~Lk~~i 114 (152)
T 1pc2_A 83 ----------RLKEYEKALKYVRGLLQTEPQNNQAKELERLI 114 (152)
T ss_dssp ----------HTSCHHHHHHHHHHHHHHCTTCHHHHHHHHHH
T ss_pred ----------HccCHHHHHHHHHHHHhcCCCCHHHHHHHHHH
Confidence 79999999999999999999988776655443
|
| >3qww_A SET and MYND domain-containing protein 2; methyltransferase, HSP90, transferase-transferase inhibitor; HET: SFG; 1.80A {Mus musculus} PDB: 3qwv_A* 3s7d_A* 3s7b_A* 3s7f_A* 3s7j_A* 3tg4_A* 3tg5_A* 3rib_A* | Back alignment and structure |
|---|
Probab=98.64 E-value=1.5e-07 Score=86.00 Aligned_cols=94 Identities=12% Similarity=0.088 Sum_probs=79.3
Q ss_pred CcccHHHHHHHHHHhhhc-----Cccc---hHHHHHHHHHHHHcCChHHHHHHHHHHhhc-----CCCC---hHHHHHHH
Q 012143 144 EPEELEEILSKLKESMQS-----DTRQ---AVVWNTLGLILLKSGRLQSSISVLSSLLAV-----DPNN---CDCIGNLG 207 (470)
Q Consensus 144 ~~~~~~~A~~~~~~~~~~-----~p~~---~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~-----~~~~---~~~~~~la 207 (470)
..|++++|+..+++++.+ .|++ ..++.++|.+|..+|+|++|+.++++++.+ .|++ ...+.++|
T Consensus 310 ~~g~~~eA~~~~~~~L~i~~~~lg~~Hp~~a~~~~nLa~~y~~~g~~~eA~~~~~~aL~i~~~~lG~~Hp~~a~~l~nLa 389 (433)
T 3qww_A 310 HYKSPSELLEICELSQEKMSSVFEDSNVYMLHMMYQAMGVCLYMQDWEGALKYGQKIIKPYSKHYPVYSLNVASMWLKLG 389 (433)
T ss_dssp TTSCHHHHHHHHHHHHHHHTTTBCTTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHSCSSCHHHHHHHHHHH
T ss_pred hccCHHHHHHHHHHHHHHhhCccChhchHHHHHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHHHcCCCChHHHHHHHHHH
Confidence 457899999999999874 3444 557889999999999999999999999975 4444 55799999
Q ss_pred HHHHHcCCHHHHHHHHHHHHhh-----CCCChHHH
Q 012143 208 IAYFQSGDMEQSAKCFQDLILK-----DQNHPAAL 237 (470)
Q Consensus 208 ~~~~~~g~~~~A~~~~~~~l~~-----~p~~~~~~ 237 (470)
.+|..+|++++|+..|++++++ .|+++...
T Consensus 390 ~~~~~qg~~~eA~~~~~~Al~i~~~~lG~~Hp~~~ 424 (433)
T 3qww_A 390 RLYMGLENKAAGEKALKKAIAIMEVAHGKDHPYIS 424 (433)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHHHHHTCTTCHHHH
T ss_pred HHHHhccCHHHHHHHHHHHHHHHHHHcCCCChHHH
Confidence 9999999999999999999975 57777654
|
| >4g26_A Pentatricopeptide repeat-containing protein AT2G3 mitochondrial; metallonuclease, prorp, ribonuclease, PIN, tRNA processing, NYN domain; 1.75A {Arabidopsis thaliana} PDB: 4g23_A* 4g25_A 4g24_A | Back alignment and structure |
|---|
Probab=98.51 E-value=2.7e-05 Score=73.08 Aligned_cols=157 Identities=12% Similarity=0.017 Sum_probs=124.1
Q ss_pred ccCcccHHHHHHHHHHhhhcC-ccchHHHHHHHHHHHHcCC---------hHHHHHHHHHHhhcC-CCChHHHHHHHHHH
Q 012143 142 ELEPEELEEILSKLKESMQSD-TRQAVVWNTLGLILLKSGR---------LQSSISVLSSLLAVD-PNNCDCIGNLGIAY 210 (470)
Q Consensus 142 ~~~~~~~~~A~~~~~~~~~~~-p~~~~~~~~l~~~~~~~~~---------~~~A~~~~~~a~~~~-~~~~~~~~~la~~~ 210 (470)
+.+.|++++|+.+|+++.+.. +.+...|..+-.++...+. .++|.+.|++..... +.+..+|..+...+
T Consensus 36 c~k~G~~~~A~~lf~~M~~~Gv~pd~~tyn~Li~~c~~~~~~~~~~~~~~l~~A~~lf~~M~~~G~~Pd~~tyn~lI~~~ 115 (501)
T 4g26_A 36 CSKKGDVLEALRLYDEARRNGVQLSQYHYNVLLYVCSLAEAATESSPNPGLSRGFDIFKQMIVDKVVPNEATFTNGARLA 115 (501)
T ss_dssp TTTSCCHHHHHHHHHHHHHHTCCCCHHHHHHHHHHHTTCCCCSSSSCCHHHHHHHHHHHHHHHTTCCCCHHHHHHHHHHH
T ss_pred HHhCCCHHHHHHHHHHHHHcCCCCCHhHHHHHHHHHHhCCchhhhhhcchHHHHHHHHHHHHHhCCCCCHHHHHHHHHHH
Confidence 457899999999999998753 2345667667667665544 688999999887653 23577899999999
Q ss_pred HHcCCHHHHHHHHHHHHhhC-CCChHHHHHHHHHHHhhhcccccccccchhhhhHHHhcCCHHHHHHHHHHHHhcCCC-C
Q 012143 211 FQSGDMEQSAKCFQDLILKD-QNHPAALINYAALLLCKYGSVLAGAGANTGEGACLDQASAVNVAKECLLAALKADPK-A 288 (470)
Q Consensus 211 ~~~g~~~~A~~~~~~~l~~~-p~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~p~-~ 288 (470)
.+.|++++|...|+++.... +.+...+..+...+. +.|+.++|.++|++..+..-. +
T Consensus 116 ~~~g~~~~A~~l~~~M~~~g~~Pd~~tyn~lI~~~~---------------------~~g~~~~A~~l~~~M~~~G~~Pd 174 (501)
T 4g26_A 116 VAKDDPEMAFDMVKQMKAFGIQPRLRSYGPALFGFC---------------------RKGDADKAYEVDAHMVESEVVPE 174 (501)
T ss_dssp HHHTCHHHHHHHHHHHHHTTCCCCHHHHHHHHHHHH---------------------HTTCHHHHHHHHHHHHHTTCCCC
T ss_pred HhcCCHHHHHHHHHHHHHcCCCCccceehHHHHHHH---------------------HCCCHHHHHHHHHHHHhcCCCCC
Confidence 99999999999999988653 235556666665555 799999999999999876322 5
Q ss_pred HHHHHHHHHHHHHcCChhHHHHHHHHHHhcC
Q 012143 289 AHIWANLANAYYLTGDHRSSGKCLEKAAKLE 319 (470)
Q Consensus 289 ~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~ 319 (470)
...|..+..++.+.|+.++|..++++..+..
T Consensus 175 ~~ty~~Li~~~~~~g~~d~A~~ll~~Mr~~g 205 (501)
T 4g26_A 175 EPELAALLKVSMDTKNADKVYKTLQRLRDLV 205 (501)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHhhCCCHHHHHHHHHHHHHhC
Confidence 8899999999999999999999999987643
|
| >4g26_A Pentatricopeptide repeat-containing protein AT2G3 mitochondrial; metallonuclease, prorp, ribonuclease, PIN, tRNA processing, NYN domain; 1.75A {Arabidopsis thaliana} PDB: 4g23_A* 4g25_A 4g24_A | Back alignment and structure |
|---|
Probab=98.48 E-value=5.2e-05 Score=71.11 Aligned_cols=189 Identities=8% Similarity=0.069 Sum_probs=134.5
Q ss_pred HHHHHHHHHHHhCChhHHHHHHHHHHHHHhhhhcccchhhhHHHHHHhhhccccccccCCCccccccCcccHHHHHHHHH
Q 012143 77 AHFLLGLMYQRLGQPLKAVSSYEKAEEILLRCEADIARPELLSLVQIHHAQCLLPESSGDNSLDKELEPEELEEILSKLK 156 (470)
Q Consensus 77 ~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~ 156 (470)
.+..+-..+.+.|+.++|+..|+++.+.... |+......+....+. .+. .......+.+++|..+|+
T Consensus 28 ~l~~~id~c~k~G~~~~A~~lf~~M~~~Gv~-------pd~~tyn~Li~~c~~----~~~--~~~~~~~~~l~~A~~lf~ 94 (501)
T 4g26_A 28 LLKQKLDMCSKKGDVLEALRLYDEARRNGVQ-------LSQYHYNVLLYVCSL----AEA--ATESSPNPGLSRGFDIFK 94 (501)
T ss_dssp HHHHHHHHTTTSCCHHHHHHHHHHHHHHTCC-------CCHHHHHHHHHHHTT----CCC--CSSSSCCHHHHHHHHHHH
T ss_pred HHHHHHHHHHhCCCHHHHHHHHHHHHHcCCC-------CCHhHHHHHHHHHHh----CCc--hhhhhhcchHHHHHHHHH
Confidence 3555667888999999999999999876322 222222111111111 111 111345688999999999
Q ss_pred HhhhcC-ccchHHHHHHHHHHHHcCChHHHHHHHHHHhhcC-CCChHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCC-CC
Q 012143 157 ESMQSD-TRQAVVWNTLGLILLKSGRLQSSISVLSSLLAVD-PNNCDCIGNLGIAYFQSGDMEQSAKCFQDLILKDQ-NH 233 (470)
Q Consensus 157 ~~~~~~-p~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p-~~ 233 (470)
++.... +.+..+|..+...|.+.|++++|...|++..+.. +.+...|..+-..|.+.|+.++|.+.|++..+..- .+
T Consensus 95 ~M~~~G~~Pd~~tyn~lI~~~~~~g~~~~A~~l~~~M~~~g~~Pd~~tyn~lI~~~~~~g~~~~A~~l~~~M~~~G~~Pd 174 (501)
T 4g26_A 95 QMIVDKVVPNEATFTNGARLAVAKDDPEMAFDMVKQMKAFGIQPRLRSYGPALFGFCRKGDADKAYEVDAHMVESEVVPE 174 (501)
T ss_dssp HHHHTTCCCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHTTCCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCCCC
T ss_pred HHHHhCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCccceehHHHHHHHHCCCHHHHHHHHHHHHhcCCCCC
Confidence 987653 2356788999999999999999999999987752 23577889999999999999999999999986532 24
Q ss_pred hHHHHHHHHHHHhhhcccccccccchhhhhHHHhcCCHHHHHHHHHHHHhc--CCCCHHHHHHHHHHHH
Q 012143 234 PAALINYAALLLCKYGSVLAGAGANTGEGACLDQASAVNVAKECLLAALKA--DPKAAHIWANLANAYY 300 (470)
Q Consensus 234 ~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~--~p~~~~~~~~la~~~~ 300 (470)
...+..+...+. +.|+.++|.+++++.-+. .|+ ..++..+-..+.
T Consensus 175 ~~ty~~Li~~~~---------------------~~g~~d~A~~ll~~Mr~~g~~ps-~~T~~~l~~~F~ 221 (501)
T 4g26_A 175 EPELAALLKVSM---------------------DTKNADKVYKTLQRLRDLVRQVS-KSTFDMIEEWFK 221 (501)
T ss_dssp HHHHHHHHHHHH---------------------HTTCHHHHHHHHHHHHHHTSSBC-HHHHHHHHHHHH
T ss_pred HHHHHHHHHHHh---------------------hCCCHHHHHHHHHHHHHhCCCcC-HHHHHHHHHHHh
Confidence 556666666665 799999999999998764 454 445555544443
|
| >3qwp_A SET and MYND domain-containing protein 3; SMYD3,SET and MYND domain, zinc finger MYND domain-containin 1, structural genomics; HET: SAM; 1.53A {Homo sapiens} PDB: 3mek_A* 3oxg_A* 3oxf_A* 3pdn_A* 3oxl_A* 3ru0_A* | Back alignment and structure |
|---|
Probab=98.47 E-value=4.7e-07 Score=82.97 Aligned_cols=97 Identities=11% Similarity=0.017 Sum_probs=80.8
Q ss_pred ccCcccHHHHHHHHHHhhhc-----Cccc---hHHHHHHHHHHHHcCChHHHHHHHHHHhhc-----CCCC---hHHHHH
Q 012143 142 ELEPEELEEILSKLKESMQS-----DTRQ---AVVWNTLGLILLKSGRLQSSISVLSSLLAV-----DPNN---CDCIGN 205 (470)
Q Consensus 142 ~~~~~~~~~A~~~~~~~~~~-----~p~~---~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~-----~~~~---~~~~~~ 205 (470)
+..+|++++|+..+++++.. .|++ ..++.++|.+|..+|+|++|+.++++++.+ .|++ ...+.+
T Consensus 297 ~~~~g~~~~a~~~~~~~L~~~~~~lg~~h~~~~~~~~~L~~~y~~~g~~~eA~~~~~~~L~i~~~~lg~~Hp~~a~~l~n 376 (429)
T 3qwp_A 297 LKAHWKWEQVLAMCQAIISSNSERLPDINIYQLKVLDCAMDACINLGLLEEALFYGTRTMEPYRIFFPGSHPVRGVQVMK 376 (429)
T ss_dssp HHHTTCHHHHHHHHHHHHTCSSCCCCTTSHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHSCSSCHHHHHHHHH
T ss_pred HHhhccHHHHHHHHHHHHHhccCcCCccchHHHHHHHHHHHHHHhhccHHHHHHHHHHHHHhHHHHcCCCChHHHHHHHH
Confidence 44678899999999999864 2344 567889999999999999999999999975 3444 457899
Q ss_pred HHHHHHHcCCHHHHHHHHHHHHhh-----CCCChHHHH
Q 012143 206 LGIAYFQSGDMEQSAKCFQDLILK-----DQNHPAALI 238 (470)
Q Consensus 206 la~~~~~~g~~~~A~~~~~~~l~~-----~p~~~~~~~ 238 (470)
+|.+|..+|++++|+..|++++++ .|+++....
T Consensus 377 La~~~~~~g~~~eA~~~~~~Al~i~~~~lG~~Hp~~~~ 414 (429)
T 3qwp_A 377 VGKLQLHQGMFPQAMKNLRLAFDIMRVTHGREHSLIED 414 (429)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHHHHHTCTTSHHHHH
T ss_pred HHHHHHhcCCHHHHHHHHHHHHHHHHHhcCCCChHHHH
Confidence 999999999999999999999965 677776543
|
| >2v5f_A Prolyl 4-hydroxylase subunit alpha-1; endoplasmic reticulum, metal-binding, oxidoreductase; 2.03A {Homo sapiens} PDB: 1tjc_A | Back alignment and structure |
|---|
Probab=98.47 E-value=2.3e-06 Score=61.30 Aligned_cols=77 Identities=14% Similarity=0.110 Sum_probs=64.7
Q ss_pred ChHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC-------CCChHHHHHHHHHHHhhhcccccccccchhhhhHHHhcCCH
Q 012143 199 NCDCIGNLGIAYFQSGDMEQSAKCFQDLILKD-------QNHPAALINYAALLLCKYGSVLAGAGANTGEGACLDQASAV 271 (470)
Q Consensus 199 ~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~-------p~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 271 (470)
++.-++.+|..++..|+|..|+..|+.+++.. +.....+..+|.++. +.|++
T Consensus 4 sa~dc~~lG~~~~~~~~y~~A~~W~~~Al~~~~~~~~~~~~~~~i~~~L~~~~~---------------------~~g~~ 62 (104)
T 2v5f_A 4 TAEDCFELGKVAYTEADYYHTELWMEQALRQLDEGEISTIDKVSVLDYLSYAVY---------------------QQGDL 62 (104)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTTCCCSSCHHHHHHHHHHHHH---------------------HTTCH
T ss_pred CHHHHHHHHHHHHHccchHHHHHHHHHHHHhhhccCCCcccHHHHHHHHHHHHH---------------------HccCH
Confidence 45678899999999999999999999999864 233455556665555 89999
Q ss_pred HHHHHHHHHHHhcCCCCHHHHHHHH
Q 012143 272 NVAKECLLAALKADPKAAHIWANLA 296 (470)
Q Consensus 272 ~~A~~~~~~~~~~~p~~~~~~~~la 296 (470)
+.|+.+++++++..|++..+..+++
T Consensus 63 ~~A~~~~~~al~l~P~~~~~~~n~~ 87 (104)
T 2v5f_A 63 DKALLLTKKLLELDPEHQRANGNLK 87 (104)
T ss_dssp HHHHHHHHHHHHHCTTCHHHHHHHH
T ss_pred HHHHHHHHHHHhcCCCCHHHHhhHH
Confidence 9999999999999999999988877
|
| >3qww_A SET and MYND domain-containing protein 2; methyltransferase, HSP90, transferase-transferase inhibitor; HET: SFG; 1.80A {Mus musculus} PDB: 3qwv_A* 3s7d_A* 3s7b_A* 3s7f_A* 3s7j_A* 3tg4_A* 3tg5_A* 3rib_A* | Back alignment and structure |
|---|
Probab=98.43 E-value=1.4e-06 Score=79.71 Aligned_cols=87 Identities=14% Similarity=0.036 Sum_probs=73.2
Q ss_pred hccccHHHHHHHHHHHhc----------chhhhhHhhHHHHHHHhccHHHHHHHHHHHHhc-----CCCc---HHHHHHH
Q 012143 380 KTHHEVAAAFETEENELS----------KMEECAGAGESAFLDQASAVNVAKECLLAALKA-----DPKA---AHIWANL 441 (470)
Q Consensus 380 ~~~~~~~~A~~~~~~~~~----------~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~-----~p~~---~~~~~~l 441 (470)
...|++++|+..+++.+. +.-...+.++|.+|..+|+|++|+.++++++++ .|++ ...+.+|
T Consensus 309 ~~~g~~~eA~~~~~~~L~i~~~~lg~~Hp~~a~~~~nLa~~y~~~g~~~eA~~~~~~aL~i~~~~lG~~Hp~~a~~l~nL 388 (433)
T 3qww_A 309 KHYKSPSELLEICELSQEKMSSVFEDSNVYMLHMMYQAMGVCLYMQDWEGALKYGQKIIKPYSKHYPVYSLNVASMWLKL 388 (433)
T ss_dssp TTTSCHHHHHHHHHHHHHHHTTTBCTTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHSCSSCHHHHHHHHHH
T ss_pred hhccCHHHHHHHHHHHHHHhhCccChhchHHHHHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHHHcCCCChHHHHHHHHH
Confidence 456789999999888554 222356789999999999999999999999974 3444 5678999
Q ss_pred HHHHHHcCChHHHHHHHHHHHHhhc
Q 012143 442 ANAYYLTGDHRSSGKCLEKVLMVYC 466 (470)
Q Consensus 442 a~~~~~~g~~~~A~~~~~~al~~~~ 466 (470)
|.+|..+|++++|..+|++|+++..
T Consensus 389 a~~~~~qg~~~eA~~~~~~Al~i~~ 413 (433)
T 3qww_A 389 GRLYMGLENKAAGEKALKKAIAIME 413 (433)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHHHH
T ss_pred HHHHHhccCHHHHHHHHHHHHHHHH
Confidence 9999999999999999999999874
|
| >3qwp_A SET and MYND domain-containing protein 3; SMYD3,SET and MYND domain, zinc finger MYND domain-containin 1, structural genomics; HET: SAM; 1.53A {Homo sapiens} PDB: 3mek_A* 3oxg_A* 3oxf_A* 3pdn_A* 3oxl_A* 3ru0_A* | Back alignment and structure |
|---|
Probab=98.42 E-value=9.7e-07 Score=80.88 Aligned_cols=108 Identities=12% Similarity=0.022 Sum_probs=82.0
Q ss_pred HHHHHHHcCChHHHHHHHHHHhhc-----CCCC---hHHHHHHHHHHHHcCCHHHHHHHHHHHHhh-----CCCChHH--
Q 012143 172 LGLILLKSGRLQSSISVLSSLLAV-----DPNN---CDCIGNLGIAYFQSGDMEQSAKCFQDLILK-----DQNHPAA-- 236 (470)
Q Consensus 172 l~~~~~~~~~~~~A~~~~~~a~~~-----~~~~---~~~~~~la~~~~~~g~~~~A~~~~~~~l~~-----~p~~~~~-- 236 (470)
...-+..+|+|++|+..+++++++ .|++ ..++.++|.+|..+|+|++|+.++++++.+ .|+++..
T Consensus 293 ~ie~~~~~g~~~~a~~~~~~~L~~~~~~lg~~h~~~~~~~~~L~~~y~~~g~~~eA~~~~~~~L~i~~~~lg~~Hp~~a~ 372 (429)
T 3qwp_A 293 KIEELKAHWKWEQVLAMCQAIISSNSERLPDINIYQLKVLDCAMDACINLGLLEEALFYGTRTMEPYRIFFPGSHPVRGV 372 (429)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHTCSSCCCCTTSHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHSCSSCHHHHH
T ss_pred HHHHHHhhccHHHHHHHHHHHHHhccCcCCccchHHHHHHHHHHHHHHhhccHHHHHHHHHHHHHhHHHHcCCCChHHHH
Confidence 344566789999999999999975 3444 457899999999999999999999999965 4566553
Q ss_pred -HHHHHHHHHhhhcccccccccchhhhhHHHhcCCHHHHHHHHHHHHhc-----CCCCHHH---HHHHHHHHH
Q 012143 237 -LINYAALLLCKYGSVLAGAGANTGEGACLDQASAVNVAKECLLAALKA-----DPKAAHI---WANLANAYY 300 (470)
Q Consensus 237 -~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~-----~p~~~~~---~~~la~~~~ 300 (470)
+.++|.++ ...|++++|+.++++++++ .|+++.+ ..+|+.+..
T Consensus 373 ~l~nLa~~~---------------------~~~g~~~eA~~~~~~Al~i~~~~lG~~Hp~~~~~~~~l~~~~~ 424 (429)
T 3qwp_A 373 QVMKVGKLQ---------------------LHQGMFPQAMKNLRLAFDIMRVTHGREHSLIEDLILLLEECDA 424 (429)
T ss_dssp HHHHHHHHH---------------------HHTTCHHHHHHHHHHHHHHHHHHTCTTSHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHH---------------------HhcCCHHHHHHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHH
Confidence 44455444 4899999999999999875 5665544 444555543
|
| >1nzn_A CGI-135 protein, fission protein FIS1P; TPR, unknown function; 2.00A {Homo sapiens} SCOP: a.118.8.1 PDB: 1iyg_A | Back alignment and structure |
|---|
Probab=98.40 E-value=3.8e-06 Score=60.72 Aligned_cols=96 Identities=14% Similarity=0.152 Sum_probs=83.4
Q ss_pred cHHHHHHHHHHhhhcCccchHHHHHHHHHHHHcCChHH---HHHHHHHHhhcC-C-CChHHHHHHHHHHHHcCCHHHHHH
Q 012143 147 ELEEILSKLKESMQSDTRQAVVWNTLGLILLKSGRLQS---SISVLSSLLAVD-P-NNCDCIGNLGIAYFQSGDMEQSAK 221 (470)
Q Consensus 147 ~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~~~~~~---A~~~~~~a~~~~-~-~~~~~~~~la~~~~~~g~~~~A~~ 221 (470)
.+..+...|.+....++....+.+.+|.++....+... ++..++..+..+ | ...+.++.+|..++++|+|++|+.
T Consensus 16 ~l~~~~~~y~~e~~~~~~s~~~~F~yAw~Lv~S~~~~d~~~GI~lLe~l~~~~~p~~~Rd~lY~LAvg~yklg~Y~~A~~ 95 (126)
T 1nzn_A 16 DLLKFEKKFQSEKAAGSVSKSTQFEYAWCLVRTRYNDDIRKGIVLLEELLPKGSKEEQRDYVFYLAVGNYRLKEYEKALK 95 (126)
T ss_dssp HHHHHHHHHHHHHHHSCCCHHHHHHHHHHHTTSSSHHHHHHHHHHHHHHTTTSCHHHHHHHHHHHHHHHHHTTCHHHHHH
T ss_pred HHHHHHHHHHHHhccCCCcHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHHhhhHHHHHH
Confidence 34677788888888788889999999999999988777 999999999887 5 567899999999999999999999
Q ss_pred HHHHHHhhCCCChHHHHHHHH
Q 012143 222 CFQDLILKDQNHPAALINYAA 242 (470)
Q Consensus 222 ~~~~~l~~~p~~~~~~~~l~~ 242 (470)
+++.+++..|++..+......
T Consensus 96 ~~~~lL~~eP~n~QA~~Lk~~ 116 (126)
T 1nzn_A 96 YVRGLLQTEPQNNQAKELERL 116 (126)
T ss_dssp HHHHHHHHCTTCHHHHHHHHH
T ss_pred HHHHHHHhCCCCHHHHHHHHH
Confidence 999999999999888654433
|
| >4h7y_A Dual specificity protein kinase TTK; mitotic checkpoint kinase, chromosome instability, cancer, tetratricopeptide repeat (TPR) motif; 1.80A {Homo sapiens} PDB: 4h7x_A | Back alignment and structure |
|---|
Probab=98.26 E-value=1.6e-05 Score=58.61 Aligned_cols=116 Identities=13% Similarity=0.053 Sum_probs=72.0
Q ss_pred hCCCChhHHHHHHHHHHHhCCh------hHHHHHHHHHHHHHhhhhcccchhhhHHHHHHhhhccccccccCCCcccccc
Q 012143 70 KMPKNAHAHFLLGLMYQRLGQP------LKAVSSYEKAEEILLRCEADIARPELLSLVQIHHAQCLLPESSGDNSLDKEL 143 (470)
Q Consensus 70 ~~p~~~~~~~~l~~~~~~~g~~------~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 143 (470)
..|++++.|..........|+. ++-++.|++|+...|... .......+.
T Consensus 8 ~~p~~yd~W~~yl~llE~~g~p~~d~~l~rlrd~YerAia~~Pp~k----~~~wrrYI~--------------------- 62 (161)
T 4h7y_A 8 MMANNPEDWLSLLLKLEKNSVPLSDALLNKLIGRYSQAIEALPPDK----YGQNESFAR--------------------- 62 (161)
T ss_dssp --CCSHHHHHHHHHHHHHHTCSCCHHHHHHHHHHHHHHHHHSCGGG----GTTCHHHHH---------------------
T ss_pred eCCCCHHHHHHHHHHHHHcCCCchhhHHHHHHHHHHHHHHcCCccc----cccHHHHHH---------------------
Confidence 5799999999999999999999 888999999998766542 122222223
Q ss_pred CcccHHHHHHHHHHhhhcCccchHHHHHHHHHHHHcCChHHHHHHHHHHhhcCCCChHHHHHHHHHHHHcCCHHHHHHHH
Q 012143 144 EPEELEEILSKLKESMQSDTRQAVVWNTLGLILLKSGRLQSSISVLSSLLAVDPNNCDCIGNLGIAYFQSGDMEQSAKCF 223 (470)
Q Consensus 144 ~~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~ 223 (470)
.|...|.. ...++.++|.+.|+.++......+.+|...|..-.++|+...|.+.+
T Consensus 63 ------------------------LWIrYA~~-~ei~D~d~aR~vy~~a~~~hKkFAKiwi~~AqFEiRqgnl~kARkIL 117 (161)
T 4h7y_A 63 ------------------------IQVRFAEL-KAIQEPDDARDYFQMARANCKKFAFVHISFAQFELSQGNVKKSKQLL 117 (161)
T ss_dssp ------------------------HHHHHHHH-HHHHCGGGCHHHHHHHHHHCTTBHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred ------------------------HHHHHHHH-HHhcCHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHcccHHHHHHHH
Confidence 33333322 33355556666666665555555555666666556666666666666
Q ss_pred HHHHhhCCCChH
Q 012143 224 QDLILKDQNHPA 235 (470)
Q Consensus 224 ~~~l~~~p~~~~ 235 (470)
.+++.+.|....
T Consensus 118 g~AiG~~~k~~~ 129 (161)
T 4h7y_A 118 QKAVERGAVPLE 129 (161)
T ss_dssp HHHHHTTCBCHH
T ss_pred HHHhccCCCcHH
Confidence 666665555443
|
| >4h7y_A Dual specificity protein kinase TTK; mitotic checkpoint kinase, chromosome instability, cancer, tetratricopeptide repeat (TPR) motif; 1.80A {Homo sapiens} PDB: 4h7x_A | Back alignment and structure |
|---|
Probab=98.13 E-value=8.8e-05 Score=54.78 Aligned_cols=114 Identities=14% Similarity=0.031 Sum_probs=77.0
Q ss_pred cCCCChHHHHHHHHHHHHcCCH------HHHHHHHHHHHhhCCCC-hHHHHHHHHHHHhhhcccccccccchhhhhHHHh
Q 012143 195 VDPNNCDCIGNLGIAYFQSGDM------EQSAKCFQDLILKDQNH-PAALINYAALLLCKYGSVLAGAGANTGEGACLDQ 267 (470)
Q Consensus 195 ~~~~~~~~~~~la~~~~~~g~~------~~A~~~~~~~l~~~p~~-~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~ 267 (470)
+.|++++.|..........|+. ++-++.|++++..-|.. ...|..++.+... .+ .+..
T Consensus 8 ~~p~~yd~W~~yl~llE~~g~p~~d~~l~rlrd~YerAia~~Pp~k~~~wrrYI~LWIr--------------YA-~~~e 72 (161)
T 4h7y_A 8 MMANNPEDWLSLLLKLEKNSVPLSDALLNKLIGRYSQAIEALPPDKYGQNESFARIQVR--------------FA-ELKA 72 (161)
T ss_dssp --CCSHHHHHHHHHHHHHHTCSCCHHHHHHHHHHHHHHHHHSCGGGGTTCHHHHHHHHH--------------HH-HHHH
T ss_pred eCCCCHHHHHHHHHHHHHcCCCchhhHHHHHHHHHHHHHHcCCccccccHHHHHHHHHH--------------HH-HHHH
Confidence 4667777777777777666776 66777777777655432 1122233333331 01 1134
Q ss_pred cCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCChhHHHHHHHHHHhcCCCcc
Q 012143 268 ASAVNVAKECLLAALKADPKAAHIWANLANAYYLTGDHRSSGKCLEKAAKLEPNCM 323 (470)
Q Consensus 268 ~~~~~~A~~~~~~~~~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~p~~~ 323 (470)
.++.++|.+.|+.++..+...+.+|...|..-.++|+...|...+.+++...|...
T Consensus 73 i~D~d~aR~vy~~a~~~hKkFAKiwi~~AqFEiRqgnl~kARkILg~AiG~~~k~~ 128 (161)
T 4h7y_A 73 IQEPDDARDYFQMARANCKKFAFVHISFAQFELSQGNVKKSKQLLQKAVERGAVPL 128 (161)
T ss_dssp HHCGGGCHHHHHHHHHHCTTBHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCBCH
T ss_pred hcCHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHcccHHHHHHHHHHHhccCCCcH
Confidence 57888888888888887777888888888888888888888888888888887744
|
| >1nzn_A CGI-135 protein, fission protein FIS1P; TPR, unknown function; 2.00A {Homo sapiens} SCOP: a.118.8.1 PDB: 1iyg_A | Back alignment and structure |
|---|
Probab=98.13 E-value=3.8e-05 Score=55.53 Aligned_cols=97 Identities=9% Similarity=-0.008 Sum_probs=78.6
Q ss_pred ChHHHHHHHHHHhhcCCCChHHHHHHHHHHHHcCCHHH---HHHHHHHHHhhC-C-CChHHHHHHHHHHHhhhccccccc
Q 012143 181 RLQSSISVLSSLLAVDPNNCDCIGNLGIAYFQSGDMEQ---SAKCFQDLILKD-Q-NHPAALINYAALLLCKYGSVLAGA 255 (470)
Q Consensus 181 ~~~~A~~~~~~a~~~~~~~~~~~~~la~~~~~~g~~~~---A~~~~~~~l~~~-p-~~~~~~~~l~~~~~~~~~~~~~~~ 255 (470)
....+...|.+....++.+..+.+.+|+++.+..+... ++..++..+..+ | ...+.++.++..+.
T Consensus 16 ~l~~~~~~y~~e~~~~~~s~~~~F~yAw~Lv~S~~~~d~~~GI~lLe~l~~~~~p~~~Rd~lY~LAvg~y---------- 85 (126)
T 1nzn_A 16 DLLKFEKKFQSEKAAGSVSKSTQFEYAWCLVRTRYNDDIRKGIVLLEELLPKGSKEEQRDYVFYLAVGNY---------- 85 (126)
T ss_dssp HHHHHHHHHHHHHHHSCCCHHHHHHHHHHHTTSSSHHHHHHHHHHHHHHTTTSCHHHHHHHHHHHHHHHH----------
T ss_pred HHHHHHHHHHHHhccCCCcHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHH----------
Confidence 34566777777777788889999999999999988777 999999998876 4 44556666666665
Q ss_pred ccchhhhhHHHhcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHH
Q 012143 256 GANTGEGACLDQASAVNVAKECLLAALKADPKAAHIWANLANA 298 (470)
Q Consensus 256 ~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~la~~ 298 (470)
+.|+|++|..+++.+++..|++..+......+
T Consensus 86 -----------klg~Y~~A~~~~~~lL~~eP~n~QA~~Lk~~i 117 (126)
T 1nzn_A 86 -----------RLKEYEKALKYVRGLLQTEPQNNQAKELERLI 117 (126)
T ss_dssp -----------HTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHH
T ss_pred -----------HhhhHHHHHHHHHHHHHhCCCCHHHHHHHHHH
Confidence 89999999999999999999998877655444
|
| >1y8m_A FIS1; mitochondria, unknown function; NMR {Saccharomyces cerevisiae} SCOP: a.118.8.1 | Back alignment and structure |
|---|
Probab=97.85 E-value=0.00059 Score=50.14 Aligned_cols=99 Identities=15% Similarity=0.217 Sum_probs=79.7
Q ss_pred cCcccHHHHHHHHHHhhhcCccchHHHHHHHHHHHHcCCh---HHHHHHHHHHhhcCC-CChHHHHHHHHHHHHcCCHHH
Q 012143 143 LEPEELEEILSKLKESMQSDTRQAVVWNTLGLILLKSGRL---QSSISVLSSLLAVDP-NNCDCIGNLGIAYFQSGDMEQ 218 (470)
Q Consensus 143 ~~~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~~~~---~~A~~~~~~a~~~~~-~~~~~~~~la~~~~~~g~~~~ 218 (470)
+...++......|.+-.. ++-.+.+.+++|.++....+. .+++..++..+..+| ...+.++.+|..++++|+|++
T Consensus 17 l~~eeL~~lr~qY~~E~~-~~vs~~t~F~YAw~Lv~S~~~~di~~GI~LLe~l~~~~~~~~RdcLYyLAvg~ykl~~Y~~ 95 (144)
T 1y8m_A 17 LYPQQLEILRQQVVSEGG-PTATIQSRFNYAWGLIKSTDVNDERLGVKILTDIYKEAESRRRECLYYLTIGCYKLGEYSM 95 (144)
T ss_dssp CCHHHHHHHHHHHHHTTS-TTSCHHHHHHHHHHHHHSSSHHHHHHHHHHHHHHHHHCCSTHHHHHHHHHHHHHTTTCHHH
T ss_pred CCHHHHHHHHHHHHHhcc-CCCcHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcCccchhHHHHHHHHHHHHhhhHHH
Confidence 344555666666665433 345688999999999998765 479999999999888 457899999999999999999
Q ss_pred HHHHHHHHHhhCCCChHHHHHHHH
Q 012143 219 SAKCFQDLILKDQNHPAALINYAA 242 (470)
Q Consensus 219 A~~~~~~~l~~~p~~~~~~~~l~~ 242 (470)
|..+.+.+++..|++..+......
T Consensus 96 Ar~y~d~lL~~eP~n~QA~~Lk~~ 119 (144)
T 1y8m_A 96 AKRYVDTLFEHERNNKQVGALKSM 119 (144)
T ss_dssp HHHHHHHHHHTCCCCHHHHHHHHH
T ss_pred HHHHHHHHHhcCCCcHHHHHHHHH
Confidence 999999999999999887654433
|
| >3o48_A Mitochondria fission 1 protein; tetratricopeptide repeat fold, TPR, scaffold, peroxisome, membrane fission, protein binding; 1.75A {Saccharomyces cerevisiae} PDB: 2pqr_A 2pqn_A 3uux_A | Back alignment and structure |
|---|
Probab=97.84 E-value=0.00045 Score=50.04 Aligned_cols=100 Identities=15% Similarity=0.227 Sum_probs=79.5
Q ss_pred cCcccHHHHHHHHHHhhhcCccchHHHHHHHHHHHHcCCh---HHHHHHHHHHhhcCCC-ChHHHHHHHHHHHHcCCHHH
Q 012143 143 LEPEELEEILSKLKESMQSDTRQAVVWNTLGLILLKSGRL---QSSISVLSSLLAVDPN-NCDCIGNLGIAYFQSGDMEQ 218 (470)
Q Consensus 143 ~~~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~~~~---~~A~~~~~~a~~~~~~-~~~~~~~la~~~~~~g~~~~ 218 (470)
+...++....+.|.+-. ...-.+.+.+++|.++.+..+. .+++..++..++.+|. ..+.++.+|..+.++|+|++
T Consensus 18 ~~~eeL~~l~~qy~~E~-~~~vs~qt~F~yAw~Lv~S~~~~d~~~GI~LLe~l~~~~~~~~Rd~LYyLAvg~yklgdY~~ 96 (134)
T 3o48_A 18 LYPQQLEILRQQVVSEG-GPTATIQSRFNYAWGLIKSTDVNDERLGVKILTDIYKEAESRRRECLYYLTIGCYKLGEYSM 96 (134)
T ss_dssp CCHHHHHHHHHHHHHTT-GGGSCHHHHHHHHHHHHHSSCHHHHHHHHHHHHHHHHHCGGGHHHHHHHHHHHHHHHTCHHH
T ss_pred CCHHHHHHHHHHHHHHh-CCCCChhhHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcCcchhHHHHHHHHHHHHHhhhHHH
Confidence 34455666666666544 3333578999999999988765 5799999999998884 57899999999999999999
Q ss_pred HHHHHHHHHhhCCCChHHHHHHHHH
Q 012143 219 SAKCFQDLILKDQNHPAALINYAAL 243 (470)
Q Consensus 219 A~~~~~~~l~~~p~~~~~~~~l~~~ 243 (470)
|..+.+.+++..|++..+......+
T Consensus 97 Ar~y~d~lL~~eP~N~QA~~Lk~~I 121 (134)
T 3o48_A 97 AKRYVDTLFEHERNNKQVGALKSMV 121 (134)
T ss_dssp HHHHHHHHHTTCTTCHHHHHHHHHH
T ss_pred HHHHHHHHHhhCCCCHHHHHHHHHH
Confidence 9999999999999999886544433
|
| >3ffl_A Anaphase-promoting complex subunit 7; tetratricopeptide repeat motif, helis-turn-helix, cell cycle division, mitosis, TPR repeat; 2.50A {Homo sapiens} | Back alignment and structure |
|---|
Probab=97.82 E-value=8.2e-05 Score=56.34 Aligned_cols=102 Identities=9% Similarity=0.007 Sum_probs=76.9
Q ss_pred ccCcccHHHHHHHHHHhhhcCccch---------HHHHHHHHHHHHcCChHHHHHHHHHHhhc------CC---------
Q 012143 142 ELEPEELEEILSKLKESMQSDTRQA---------VVWNTLGLILLKSGRLQSSISVLSSLLAV------DP--------- 197 (470)
Q Consensus 142 ~~~~~~~~~A~~~~~~~~~~~p~~~---------~~~~~l~~~~~~~~~~~~A~~~~~~a~~~------~~--------- 197 (470)
.+..|.|+.|+.....++....+++ .++..+|.+++..|+|..|...|++++.. .|
T Consensus 30 L~d~~LY~sA~~La~lLlSl~~~~~~~~sp~~~~~~l~~ladalf~~~eyrrA~~~y~qALq~~k~l~k~~s~~~~~~~~ 109 (167)
T 3ffl_A 30 MAAAGLHSNVRLLSSLLLTLSNNNPELFSPPQKYQLLVYHADSLFHDKEYRNAVSKYTMALQQKKALSKTSKVRPSTGNS 109 (167)
T ss_dssp HHHTTCHHHHHHHHHHHHHHHHHSTTSSCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHCC-------------
T ss_pred HHHhhhHHHHHHHHHHHHHhhcCCcccccHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHHhcCCCcccccccc
Confidence 4567888999999988776554433 37889999999999999999999998764 11
Q ss_pred ----------CChHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCChHHHHHHHHHH
Q 012143 198 ----------NNCDCIGNLGIAYFQSGDMEQSAKCFQDLILKDQNHPAALINYAALL 244 (470)
Q Consensus 198 ----------~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~l~~~~ 244 (470)
.+.++.+.++.||..+|++++|+..++.+-. ....+.....+|.+|
T Consensus 110 ss~p~s~~~~~e~Elkykia~C~~~l~~~~~Ai~~Le~Ip~-k~Rt~kvnm~LakLy 165 (167)
T 3ffl_A 110 ASTPQSQCLPSEIEVKYKLAECYTVLKQDKDAIAILDGIPS-RQRTPKINMLLANLY 165 (167)
T ss_dssp -------CCCCHHHHHHHHHHHHHHTTCHHHHHHHHHTSCG-GGCCHHHHHHHHHHC
T ss_pred CCCcccccccchHHHHHHHHHHHHHHCCHHHHHHHHhcCCc-hhcCHHHHHHHHHHh
Confidence 1126889999999999999999999887532 233455555666554
|
| >3ffl_A Anaphase-promoting complex subunit 7; tetratricopeptide repeat motif, helis-turn-helix, cell cycle division, mitosis, TPR repeat; 2.50A {Homo sapiens} | Back alignment and structure |
|---|
Probab=97.71 E-value=0.00035 Score=52.92 Aligned_cols=64 Identities=11% Similarity=0.020 Sum_probs=53.0
Q ss_pred hHHHHHHHHHHHHcCChHHHHHHHHHHhhcCCCCh---------HHHHHHHHHHHHcCCHHHHHHHHHHHHhh
Q 012143 166 AVVWNTLGLILLKSGRLQSSISVLSSLLAVDPNNC---------DCIGNLGIAYFQSGDMEQSAKCFQDLILK 229 (470)
Q Consensus 166 ~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~---------~~~~~la~~~~~~g~~~~A~~~~~~~l~~ 229 (470)
..+++.-...+...|.|+.|+-....++.+..+++ .++..+|.+++..|+|..|...|++++..
T Consensus 20 ~~~l~dqik~L~d~~LY~sA~~La~lLlSl~~~~~~~~sp~~~~~~l~~ladalf~~~eyrrA~~~y~qALq~ 92 (167)
T 3ffl_A 20 HMNVIDHVRDMAAAGLHSNVRLLSSLLLTLSNNNPELFSPPQKYQLLVYHADSLFHDKEYRNAVSKYTMALQQ 92 (167)
T ss_dssp -CCHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSTTSSCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhhhHHHHHHHHHHHHHhhcCCcccccHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHH
Confidence 34566777888999999999999999877643333 37899999999999999999999999865
|
| >3txn_A 26S proteasome regulatory complex subunit P42B; PCI domain, alpha solenoid, regulatory PART LID, hydrolase, protein binding; 2.50A {Drosophila melanogaster} PDB: 3txm_A | Back alignment and structure |
|---|
Probab=97.31 E-value=0.025 Score=50.52 Aligned_cols=198 Identities=9% Similarity=0.040 Sum_probs=120.6
Q ss_pred hHHHHHHHHHHHhCChhHHHHHHHHHHHHHhhhhcccchhhhHHHHHHhhhccccccccCCCccccccCcccHHHHHHHH
Q 012143 76 HAHFLLGLMYQRLGQPLKAVSSYEKAEEILLRCEADIARPELLSLVQIHHAQCLLPESSGDNSLDKELEPEELEEILSKL 155 (470)
Q Consensus 76 ~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~ 155 (470)
.+.+.||.+|...|++++-.+++.......+.-. ..... .+...+...+... .+..+.-+..+
T Consensus 20 ~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~----kak~~---k~v~~l~~~~~~~----------~~~~~~~~~~~ 82 (394)
T 3txn_A 20 QGILQQGELYKQEGKAKELADLIKVTRPFLSSIS----KAKAA---KLVRSLVDMFLDM----------DAGTGIEVQLC 82 (394)
T ss_dssp HHHHHHHHHHHHHTCHHHHHHHHHHTTTGGGGSC----HHHHH---HHHHHHHHHHTTS----------CCCHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhc----hHHHH---HHHHHHHHHHhcC----------CCcHHHHHHHH
Confidence 4677899999999999988888776654332211 11111 1111111111111 12235555666
Q ss_pred HHhhhcCccchHH------HHHHHHHHHHcCChHHHHHHHHHHhhcCCC------ChHHHHHHHHHHHHcCCHHHHHHHH
Q 012143 156 KESMQSDTRQAVV------WNTLGLILLKSGRLQSSISVLSSLLAVDPN------NCDCIGNLGIAYFQSGDMEQSAKCF 223 (470)
Q Consensus 156 ~~~~~~~p~~~~~------~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~------~~~~~~~la~~~~~~g~~~~A~~~~ 223 (470)
...++-..+.-.. -..+|..|+..|+|.+|.+.+.+..+.-.. ..+++..-..+|..++++.++...+
T Consensus 83 ~~~~~~a~~~~r~flr~~l~~kL~~l~~~~~~y~~a~~~i~~l~~~~~~~dd~~~llev~lle~~~~~~~~n~~k~k~~l 162 (394)
T 3txn_A 83 KDCIEWAKQEKRTFLRQSLEARLIALYFDTALYTEALALGAQLLRELKKLDDKNLLVEVQLLESKTYHALSNLPKARAAL 162 (394)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHTTSSCTHHHHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHhccccchhHHHHHHHHHHHHHHhccHHHHHHHH
Confidence 6655433222122 237899999999999999999888764221 1356777888999999999999999
Q ss_pred HHHHhhC---CCChHHHHHHHHHHHhhhcccccccccchhhhhHHH-hcCCHHHHHHHHHHHHhcCCCC-----HHHHHH
Q 012143 224 QDLILKD---QNHPAALINYAALLLCKYGSVLAGAGANTGEGACLD-QASAVNVAKECLLAALKADPKA-----AHIWAN 294 (470)
Q Consensus 224 ~~~l~~~---p~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~A~~~~~~~~~~~p~~-----~~~~~~ 294 (470)
.++.... +.+|.. .|.+... -|..+. ..++|..|...|-++++..... ..+...
T Consensus 163 ~~a~~~~~ai~~~p~i---~a~i~~~--------------~Gi~~l~~~rdyk~A~~~F~eaf~~f~~~~~~~~~~~lkY 225 (394)
T 3txn_A 163 TSARTTANAIYCPPKV---QGALDLQ--------------SGILHAADERDFKTAFSYFYEAFEGFDSVDSVKALTSLKY 225 (394)
T ss_dssp HHHHHHHHHSCCCHHH---HHHHHHH--------------HHHHHHHTTSCHHHHHHHHHHHHHHHTTTCHHHHHHHHHH
T ss_pred HHHHhhhccCCCCHHH---HHHHHHH--------------hhHHHHHhccCHHHHHHHHHHHHhcccccccHHHHHHHHH
Confidence 9987653 222322 2333322 267777 7999999999999987543321 233444
Q ss_pred HHHHHHHcCChhH
Q 012143 295 LANAYYLTGDHRS 307 (470)
Q Consensus 295 la~~~~~~g~~~~ 307 (470)
++.+-...++..+
T Consensus 226 lvL~aLl~~~r~e 238 (394)
T 3txn_A 226 MLLCKIMLGQSDD 238 (394)
T ss_dssp HHHHHHHTTCGGG
T ss_pred HHHHHHHcCCHHH
Confidence 5555555555433
|
| >3o48_A Mitochondria fission 1 protein; tetratricopeptide repeat fold, TPR, scaffold, peroxisome, membrane fission, protein binding; 1.75A {Saccharomyces cerevisiae} PDB: 2pqr_A 2pqn_A 3uux_A | Back alignment and structure |
|---|
Probab=97.20 E-value=0.012 Score=42.67 Aligned_cols=63 Identities=13% Similarity=0.066 Sum_probs=50.6
Q ss_pred cHHHHHHHHHHhhhcCc-cchHHHHHHHHHHHHcCChHHHHHHHHHHhhcCCCChHHHHHHHHH
Q 012143 147 ELEEILSKLKESMQSDT-RQAVVWNTLGLILLKSGRLQSSISVLSSLLAVDPNNCDCIGNLGIA 209 (470)
Q Consensus 147 ~~~~A~~~~~~~~~~~p-~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~la~~ 209 (470)
+..+++.+++..++.+| ..-+.++.+|..+.+.|+|++|..+.+.+++..|++..+......+
T Consensus 58 d~~~GI~LLe~l~~~~~~~~Rd~LYyLAvg~yklgdY~~Ar~y~d~lL~~eP~N~QA~~Lk~~I 121 (134)
T 3o48_A 58 DERLGVKILTDIYKEAESRRRECLYYLTIGCYKLGEYSMAKRYVDTLFEHERNNKQVGALKSMV 121 (134)
T ss_dssp HHHHHHHHHHHHHHHCGGGHHHHHHHHHHHHHHHTCHHHHHHHHHHHHTTCTTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhcCcchhHHHHHHHHHHHHHhhhHHHHHHHHHHHHhhCCCCHHHHHHHHHH
Confidence 34566777777776677 3477899999999999999999999999999999998876655444
|
| >1y8m_A FIS1; mitochondria, unknown function; NMR {Saccharomyces cerevisiae} SCOP: a.118.8.1 | Back alignment and structure |
|---|
Probab=97.13 E-value=0.018 Score=42.37 Aligned_cols=61 Identities=13% Similarity=0.069 Sum_probs=46.8
Q ss_pred HHHHHHHHHhhhcCc-cchHHHHHHHHHHHHcCChHHHHHHHHHHhhcCCCChHHHHHHHHH
Q 012143 149 EEILSKLKESMQSDT-RQAVVWNTLGLILLKSGRLQSSISVLSSLLAVDPNNCDCIGNLGIA 209 (470)
Q Consensus 149 ~~A~~~~~~~~~~~p-~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~la~~ 209 (470)
.+++.+++..+...| ..-+.++.+|..+.+.|+|.+|..+.+.+++..|++..+......+
T Consensus 59 ~~GI~LLe~l~~~~~~~~RdcLYyLAvg~ykl~~Y~~Ar~y~d~lL~~eP~n~QA~~Lk~~I 120 (144)
T 1y8m_A 59 RLGVKILTDIYKEAESRRRECLYYLTIGCYKLGEYSMAKRYVDTLFEHERNNKQVGALKSMV 120 (144)
T ss_dssp HHHHHHHHHHHHHCCSTHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHTCCCCHHHHHHHHHH
T ss_pred HHHHHHHHHHHhcCccchhHHHHHHHHHHHHhhhHHHHHHHHHHHHhcCCCcHHHHHHHHHH
Confidence 455566666666566 3567888999999999999999999999999999988776554433
|
| >3kae_A CDC27, possible protein of nuclear scaffold; tetratricopeptide repeat protein, protein binding; 2.30A {Encephalitozoon cuniculi} | Back alignment and structure |
|---|
Probab=96.97 E-value=0.041 Score=41.48 Aligned_cols=77 Identities=12% Similarity=0.037 Sum_probs=55.7
Q ss_pred hhhhhHHHHHHHHHHHHhcCCCCcchhhhcccchhhhhcChhhHHHHHHHHHHhCCCChhHHHHHHHHHHHhCChhHHHH
Q 012143 17 KLGKCRSRISSKMDSALEFGVDADGDQSGLGTSSSSREEKVSSLKTGLVHVARKMPKNAHAHFLLGLMYQRLGQPLKAVS 96 (470)
Q Consensus 17 ~~g~~~~a~~~~~~~~l~~~p~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~l~~~~~~~g~~~~A~~ 96 (470)
+-.+++.++ .+... +-|..++-...++.+ +...|.+.++.-.+. .-+...+.+.-+.||....++..|+.
T Consensus 14 kY~dYdt~~--fLsa~--L~~~~~eY~lL~~I~-LyyngEY~R~Lf~L~-----~lNT~Ts~YYk~LCy~klKdYkkA~~ 83 (242)
T 3kae_A 14 RYRDYETAI--FLAAC--LLPCKPEYRMLMSIV-LYLNGEYTRALFHLH-----KLNTCTSKYYESLCYKKKKDYKKAIK 83 (242)
T ss_dssp HTTCHHHHH--HHHHH--HC----CTHHHHHHH-HHHTTCHHHHHHHHH-----TCCBHHHHHHHHHHHHHTTCHHHHHH
T ss_pred hcccccHHH--HHHHH--HccCChHHHhhhhhh-hhhcchHhHHHHHHH-----hcchHHHHHHHHHHHHHHHHHHHHHH
Confidence 334455554 33333 234455666678888 999999999887775 45668889999999999999999999
Q ss_pred HHHHHHH
Q 012143 97 SYEKAEE 103 (470)
Q Consensus 97 ~~~~al~ 103 (470)
.++..+.
T Consensus 84 ~le~il~ 90 (242)
T 3kae_A 84 SLESILE 90 (242)
T ss_dssp HHHHHHT
T ss_pred HHHHHHh
Confidence 9999984
|
| >3txn_A 26S proteasome regulatory complex subunit P42B; PCI domain, alpha solenoid, regulatory PART LID, hydrolase, protein binding; 2.50A {Drosophila melanogaster} PDB: 3txm_A | Back alignment and structure |
|---|
Probab=96.96 E-value=0.049 Score=48.65 Aligned_cols=177 Identities=10% Similarity=-0.046 Sum_probs=110.2
Q ss_pred HHHHHHHHHHHHcCChhHHHHHHHHHHhcCCCcccHHHHHHHHHHHHhhhc-cCchHHhhhhHHHHHHHhhcCCCCCCCc
Q 012143 290 HIWANLANAYYLTGDHRSSGKCLEKAAKLEPNCMSTRYAVAVSRIKDAERS-QEPTEQLSWAGNEMASILREGDPVQIEP 368 (470)
Q Consensus 290 ~~~~~la~~~~~~g~~~~A~~~~~~a~~~~p~~~~~~~~l~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 368 (470)
.+...+|.+|...|++++-..++......-+.-+.+........+-+.... ....+.......+.......... ....
T Consensus 20 ~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~kak~~k~v~~l~~~~~~~~~~~~~~~~~~~~~~~~a~~~~r-~flr 98 (394)
T 3txn_A 20 QGILQQGELYKQEGKAKELADLIKVTRPFLSSISKAKAAKLVRSLVDMFLDMDAGTGIEVQLCKDCIEWAKQEKR-TFLR 98 (394)
T ss_dssp HHHHHHHHHHHHHTCHHHHHHHHHHTTTGGGGSCHHHHHHHHHHHHHHHTTSCCCHHHHHHHHHHHHHHHHHTTC-HHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhchHHHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHHHHHHH-HHHH
Confidence 455788999999999988888887766555555544444333333322222 12221111222222222221111 0000
Q ss_pred HHHHHHHHHHHhccccHHHHHHHHHHHhcch--------hhhhHhhHHHHHHHhccHHHHHHHHHHHHhcC---CCc---
Q 012143 369 PIAWAGFAAVQKTHHEVAAAFETEENELSKM--------EECAGAGESAFLDQASAVNVAKECLLAALKAD---PKA--- 434 (470)
Q Consensus 369 ~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~--------~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~---p~~--- 434 (470)
...-..++..|...|++.+|...+.+..... -.+.+.....+|...+++.++...+.++.... +.+
T Consensus 99 ~~l~~kL~~l~~~~~~y~~a~~~i~~l~~~~~~~dd~~~llev~lle~~~~~~~~n~~k~k~~l~~a~~~~~ai~~~p~i 178 (394)
T 3txn_A 99 QSLEARLIALYFDTALYTEALALGAQLLRELKKLDDKNLLVEVQLLESKTYHALSNLPKARAALTSARTTANAIYCPPKV 178 (394)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHTTSSCTHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCHHH
T ss_pred HHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHhccccchhHHHHHHHHHHHHHHhccHHHHHHHHHHHHhhhccCCCCHHH
Confidence 0122378999999999999998888744421 11445567778889999999999999887542 122
Q ss_pred -HHHHHHHHHHHH-HcCChHHHHHHHHHHHHhhcc
Q 012143 435 -AHIWANLANAYY-LTGDHRSSGKCLEKVLMVYCS 467 (470)
Q Consensus 435 -~~~~~~la~~~~-~~g~~~~A~~~~~~al~~~~~ 467 (470)
+.....-|..+. ..++|..|..+|-++++-|.+
T Consensus 179 ~a~i~~~~Gi~~l~~~rdyk~A~~~F~eaf~~f~~ 213 (394)
T 3txn_A 179 QGALDLQSGILHAADERDFKTAFSYFYEAFEGFDS 213 (394)
T ss_dssp HHHHHHHHHHHHHHTTSCHHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHhhHHHHHhccCHHHHHHHHHHHHhcccc
Confidence 345566788888 899999999999999877654
|
| >1zbp_A Hypothetical protein VPA1032; alpha-beta protein, structural genomics, PSI, protein struct initiative; 2.40A {Vibrio parahaemolyticus} SCOP: e.61.1.1 | Back alignment and structure |
|---|
Probab=96.71 E-value=0.039 Score=45.65 Aligned_cols=58 Identities=12% Similarity=0.052 Sum_probs=54.4
Q ss_pred hhhhcChhhHHHHHHHHHHhCCCChhHHHHHHHHHHHhCChhHHHHHHHHHHHHHhhh
Q 012143 51 SSREEKVSSLKTGLVHVARKMPKNAHAHFLLGLMYQRLGQPLKAVSSYEKAEEILLRC 108 (470)
Q Consensus 51 ~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~ 108 (470)
+++.|++++++..+...++.+|.+......+..+++-.|+++.|...++.+.+++|..
T Consensus 7 ll~~g~L~~al~~~~~~VR~~P~da~~R~~LfqLLcv~G~w~RA~~QL~~~a~l~p~~ 64 (273)
T 1zbp_A 7 ALSEGQLQQALELLIEAIKASPKDASLRSSFIELLCIDGDFERADEQLMQSIKLFPEY 64 (273)
T ss_dssp HTTTTCHHHHHHHHHHHHHTCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCGGG
T ss_pred HHhCCCHHHHHHHHHHHHHhCCcCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCchh
Confidence 6788999999999999999999999999999999999999999999999999997653
|
| >2wpv_A GET4, UPF0363 protein YOR164C; golgi-ER trafficking, tail-anchored protein, protein binding GET4; 1.99A {Saccharomyces cerevisiae} PDB: 3lku_A | Back alignment and structure |
|---|
Probab=96.52 E-value=0.33 Score=41.64 Aligned_cols=80 Identities=8% Similarity=-0.012 Sum_probs=52.4
Q ss_pred HHHHHHHHHhhhcCccchHHHHHHHHHHHHcCChHHHHHHHHHHh----------------h---cCCCChHHHHHHHH-
Q 012143 149 EEILSKLKESMQSDTRQAVVWNTLGLILLKSGRLQSSISVLSSLL----------------A---VDPNNCDCIGNLGI- 208 (470)
Q Consensus 149 ~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~----------------~---~~~~~~~~~~~la~- 208 (470)
.+|+.+-.+.-...-.++..+..+|..+...|++.+|..+|-..- + -.|...+.+...+.
T Consensus 117 ~~ai~WS~~~g~~~~Gdp~LH~~~a~~~~~e~~~~~A~~H~i~~~~~s~~~~a~~l~~w~~~~~~~~~~e~dlf~~RaVL 196 (312)
T 2wpv_A 117 TGMNNWSIKFSEYKFGDPYLHNTIGSKLLEGDFVYEAERYFMLGTHDSMIKYVDLLWDWLCQVDDIEDSTVAEFFSRLVF 196 (312)
T ss_dssp HHHHHHHHHTSSCTTCCHHHHHHHHHHHHHTTCHHHHHHHHHTSCHHHHHHHHHHHHHHHHHTTCCCHHHHHHHHHHHHH
T ss_pred HHHHHHHhhcCCCCCCCHHHHHHHHHHHhhcCCHHHHHHHHHhCCCccHHHHHHHHHHHHHhcCCCCcchHHHHHHHHHH
Confidence 455555554433334678999999999999999999999885321 1 12223344444443
Q ss_pred HHHHcCCHHHHHHHHHHHHh
Q 012143 209 AYFQSGDMEQSAKCFQDLIL 228 (470)
Q Consensus 209 ~~~~~g~~~~A~~~~~~~l~ 228 (470)
.|...|+...|...+....+
T Consensus 197 ~yL~l~n~~~A~~~~~~f~~ 216 (312)
T 2wpv_A 197 NYLFISNISFAHESKDIFLE 216 (312)
T ss_dssp HHHHTTBHHHHHHHHHHHHH
T ss_pred HHHHhcCHHHHHHHHHHHHH
Confidence 45678888888888776553
|
| >1qsa_A Protein (soluble lytic transglycosylase SLT70); alpha-superhelix, transferase; HET: GOL; 1.65A {Escherichia coli} SCOP: a.118.5.1 d.2.1.6 PDB: 1qte_A* 1sly_A* | Back alignment and structure |
|---|
Probab=96.48 E-value=0.64 Score=44.47 Aligned_cols=52 Identities=8% Similarity=-0.048 Sum_probs=36.5
Q ss_pred HHhccHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHcCChHHHHHHHHHHHH
Q 012143 412 DQASAVNVAKECLLAALKADPKAAHIWANLANAYYLTGDHRSSGKCLEKVLM 463 (470)
Q Consensus 412 ~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~ 463 (470)
.+.|+++.|..+|+..-...+..+...|.+|..+...|+.++|..+|+++.+
T Consensus 296 lr~~d~~~a~~~~~~l~~~~~~~~r~~YW~~ra~~~~g~~~~a~~~~~~~a~ 347 (618)
T 1qsa_A 296 LGTGDRRGLNTWLARLPMEAKEKDEWRYWQADLLLERGREAEAKEILHQLMQ 347 (618)
T ss_dssp HHHTCHHHHHHHHHHSCTTGGGSHHHHHHHHHHHHHTTCHHHHHHHHHHHHT
T ss_pred HHCCCHHHHHHHHHHccccccccHhHHHHHHHHHHHcCCHHHHHHHHHHHhc
Confidence 3457788887777765443334566777888887788888888887777654
|
| >4gns_B Protein CSD3, chitin biosynthesis protein CHS6; FN3, BRCT, tetratricopeptide repeat, cargo adaptor, transpor; HET: EPE; 2.75A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=96.47 E-value=0.023 Score=55.34 Aligned_cols=123 Identities=11% Similarity=0.024 Sum_probs=85.2
Q ss_pred HcCC-hHHHHHHHHHHhhcCCCChHHHHHHHHHHH--Hc-CCHHHHHHHHHHHHhh--------CCCChHHHH---HHHH
Q 012143 178 KSGR-LQSSISVLSSLLAVDPNNCDCIGNLGIAYF--QS-GDMEQSAKCFQDLILK--------DQNHPAALI---NYAA 242 (470)
Q Consensus 178 ~~~~-~~~A~~~~~~a~~~~~~~~~~~~~la~~~~--~~-g~~~~A~~~~~~~l~~--------~p~~~~~~~---~l~~ 242 (470)
..++ ++.|+..+++....+|.... ++..+.+.. .. .+--+|+..+.+.++. .+.+..... ..+.
T Consensus 260 ~t~~~~~~a~~~le~L~~~~p~~~~-~~~~~~i~~~~~~~~~Ev~av~ll~~~l~~~~~~~~~l~~~~~~~~~~~~~~~~ 338 (754)
T 4gns_B 260 ITPSLVDFTIDYLKGLTKKDPIHDI-YYKTAMITILDHIETKELDMITILNETLDPLLSLLNDLPPRDADSARLMNCMSD 338 (754)
T ss_dssp TCGGGHHHHHHHHHHHHHHCGGGHH-HHHHHHHHHHTTCGGGHHHHHHHHHHHHHHHHHHHHTCSSCCHHHHHHHHHHHH
T ss_pred ccccHHHHHHHHHHHHHhhCCchhH-HHHHHHHHHHHHhhhhhHHHHHHHHHHHHHhhhhhhhhcccccccccccCcchH
Confidence 3455 57899999999998886543 333333222 12 3445677777776632 333332211 1111
Q ss_pred HHHhhhcccccccccchhhhhHHHhcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCChhHHHHHHHHH
Q 012143 243 LLLCKYGSVLAGAGANTGEGACLDQASAVNVAKECLLAALKADPKAAHIWANLANAYYLTGDHRSSGKCLEKA 315 (470)
Q Consensus 243 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~a 315 (470)
++.. .+..+...|+++-|+++.++++...|.....|..|+.+|..+|+|+.|+-.+..+
T Consensus 339 LL~~--------------Qa~FLl~K~~~elAL~~Ak~AV~~aPseF~tW~~La~vYi~l~d~e~ALLtLNSc 397 (754)
T 4gns_B 339 LLNI--------------QTNFLLNRGDYELALGVSNTSTELALDSFESWYNLARCHIKKEEYEKALFAINSM 397 (754)
T ss_dssp HHHH--------------HHHHHHHTTCHHHHHHHHHHHHHHCSSCHHHHHHHHHHHHHTTCHHHHHHHHHHS
T ss_pred HHHH--------------HHHHHhccCcHHHHHHHHHHHHhcCchhhHHHHHHHHHHHHhccHHHHHHHHhcC
Confidence 2221 2555667999999999999999999999999999999999999999999888766
|
| >1zbp_A Hypothetical protein VPA1032; alpha-beta protein, structural genomics, PSI, protein struct initiative; 2.40A {Vibrio parahaemolyticus} SCOP: e.61.1.1 | Back alignment and structure |
|---|
Probab=96.43 E-value=0.13 Score=42.61 Aligned_cols=63 Identities=16% Similarity=0.183 Sum_probs=47.3
Q ss_pred HHHHcCChHHHHHHHHHHhhcCCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCChHHH
Q 012143 175 ILLKSGRLQSSISVLSSLLAVDPNNCDCIGNLGIAYFQSGDMEQSAKCFQDLILKDQNHPAAL 237 (470)
Q Consensus 175 ~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~ 237 (470)
...+.|..++|+......++.+|.+......+..+++-.|+++.|.+-++.+.+++|......
T Consensus 6 ~ll~~g~L~~al~~~~~~VR~~P~da~~R~~LfqLLcv~G~w~RA~~QL~~~a~l~p~~~~~a 68 (273)
T 1zbp_A 6 NALSEGQLQQALELLIEAIKASPKDASLRSSFIELLCIDGDFERADEQLMQSIKLFPEYLPGA 68 (273)
T ss_dssp HHTTTTCHHHHHHHHHHHHHTCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCGGGHHHH
T ss_pred HHHhCCCHHHHHHHHHHHHHhCCcCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCchhhHHH
Confidence 345667777788888777777888877777777777778888888888887777777665443
|
| >4b4t_P 26S proteasome regulatory subunit RPN5; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=96.40 E-value=0.28 Score=45.00 Aligned_cols=196 Identities=11% Similarity=0.019 Sum_probs=121.0
Q ss_pred cCCHHHHHHHHHHHHhc------CCCCHHHHHHHHHHHHHcCChhHHHHHHHHHHhcCCCcccHHHHHHHHHHHHhhhcc
Q 012143 268 ASAVNVAKECLLAALKA------DPKAAHIWANLANAYYLTGDHRSSGKCLEKAAKLEPNCMSTRYAVAVSRIKDAERSQ 341 (470)
Q Consensus 268 ~~~~~~A~~~~~~~~~~------~p~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~p~~~~~~~~l~~~~~~~~~~~~ 341 (470)
.|+++.|++.+...-+. .+....+...+..++...|+++...+.+.-..........+...+....+.-.....
T Consensus 29 ~~~~~~a~e~ll~lEK~~r~~~d~~s~~r~l~~iv~l~~~~~~~~~l~e~i~~Lskkr~qlk~ai~~~V~~~~~~l~~~~ 108 (445)
T 4b4t_P 29 QNDCNSALDQLLVLEKKTRQASDLASSKEVLAKIVDLLASRNKWDDLNEQLTLLSKKHGQLKLSIQYMIQKVMEYLKSSK 108 (445)
T ss_dssp HHHHHHHHHHHHHHHHHHSSSCSTTTCHHHHHHHHHHHHHHSCHHHHHHHHHHHHTTTTTSHHHHHHHHHHHHHHHHHHC
T ss_pred cCCHHHHHHHHHHHHHHhhhccchhhHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHhcCC
Confidence 35678888776544432 233577888899999999999988777765544433222222211111111111111
Q ss_pred CchHHhhhhHHHHHHHhhcCCC----CCCCcHHHHHHHHHHHhccccHHHHHHHHHHHhc--------chhhhhHhhHHH
Q 012143 342 EPTEQLSWAGNEMASILREGDP----VQIEPPIAWAGFAAVQKTHHEVAAAFETEENELS--------KMEECAGAGESA 409 (470)
Q Consensus 342 ~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~--------~~~~~~~~~l~~ 409 (470)
. .+ . .........+..... +..........++.++...|++.+|...+..... ..-.+.+.....
T Consensus 109 ~-~d-~-~~~~~~i~~l~~vte~kiflE~erarl~~~La~i~e~~g~~~eA~~iL~~l~~Et~~~~~~~~kve~~l~q~r 185 (445)
T 4b4t_P 109 S-LD-L-NTRISVIETIRVVTENKIFVEVERARVTKDLVEIKKEEGKIDEAADILCELQVETYGSMEMSEKIQFILEQME 185 (445)
T ss_dssp T-TH-H-HHHHHHHHCCSSSSSCCCCCCHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHCSSSCHHHHHHHHHHHHH
T ss_pred c-hh-H-HHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHH
Confidence 0 00 0 000111111111111 1112456678899999999999999998887332 112255667788
Q ss_pred HHHHhccHHHHHHHHHHHHh---cCCCc----HHHHHHHHHHHHHcCChHHHHHHHHHHHHhhc
Q 012143 410 FLDQASAVNVAKECLLAALK---ADPKA----AHIWANLANAYYLTGDHRSSGKCLEKVLMVYC 466 (470)
Q Consensus 410 ~~~~~~~~~~A~~~~~~al~---~~p~~----~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~ 466 (470)
++...+++.+|...+.++.. ..+.. ...+...|.++...++|.+|..+|..+++.+.
T Consensus 186 l~l~~~d~~~a~~~~~ki~~~~~~~~~~~~lk~~~~~~~~~~~~~e~~y~~a~~~y~e~~~~~~ 249 (445)
T 4b4t_P 186 LSILKGDYSQATVLSRKILKKTFKNPKYESLKLEYYNLLVKISLHKREYLEVAQYLQEIYQTDA 249 (445)
T ss_dssp HHHHHTCHHHHHHHHHHHHHHHHHSSCCHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHH
T ss_pred HHHHCCCHHHHHHHHHHHHHhhcccCCcHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHhccc
Confidence 89999999999999998743 22333 34667889999999999999999999987654
|
| >4gns_B Protein CSD3, chitin biosynthesis protein CHS6; FN3, BRCT, tetratricopeptide repeat, cargo adaptor, transpor; HET: EPE; 2.75A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=96.37 E-value=0.037 Score=53.86 Aligned_cols=60 Identities=13% Similarity=0.169 Sum_probs=55.3
Q ss_pred HHHHHHHHHHHHcCChHHHHHHHHHHhhcCCCChHHHHHHHHHHHHcCCHHHHHHHHHHH
Q 012143 167 VVWNTLGLILLKSGRLQSSISVLSSLLAVDPNNCDCIGNLGIAYFQSGDMEQSAKCFQDL 226 (470)
Q Consensus 167 ~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~ 226 (470)
..+..-+..+...|+++-|+.+-++++...|.....|..|+.+|..+|+|+.|+-.+..+
T Consensus 338 ~LL~~Qa~FLl~K~~~elAL~~Ak~AV~~aPseF~tW~~La~vYi~l~d~e~ALLtLNSc 397 (754)
T 4gns_B 338 DLLNIQTNFLLNRGDYELALGVSNTSTELALDSFESWYNLARCHIKKEEYEKALFAINSM 397 (754)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSSCHHHHHHHHHHHHHTTCHHHHHHHHHHS
T ss_pred HHHHHHHHHHhccCcHHHHHHHHHHHHhcCchhhHHHHHHHHHHHHhccHHHHHHHHhcC
Confidence 456667888889999999999999999999999999999999999999999999888876
|
| >3mkq_A Coatomer beta'-subunit; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae} PDB: 2ynp_A | Back alignment and structure |
|---|
Probab=96.31 E-value=0.09 Score=52.76 Aligned_cols=44 Identities=16% Similarity=0.248 Sum_probs=24.2
Q ss_pred CcccHHHHHHHHHHhhhcCccchHHHHHHHHHHHHcCChHHHHHHHHHH
Q 012143 144 EPEELEEILSKLKESMQSDTRQAVVWNTLGLILLKSGRLQSSISVLSSL 192 (470)
Q Consensus 144 ~~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~a 192 (470)
..|++++|.+..+.. +++..|..+|..+...|+++.|+.+|.++
T Consensus 664 ~~~~~~~A~~~~~~~-----~~~~~W~~la~~al~~~~~~~A~~~y~~~ 707 (814)
T 3mkq_A 664 KVGQLTLARDLLTDE-----SAEMKWRALGDASLQRFNFKLAIEAFTNA 707 (814)
T ss_dssp HHTCHHHHHHHHTTC-----CCHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred hcCCHHHHHHHHHhh-----CcHhHHHHHHHHHHHcCCHHHHHHHHHHc
Confidence 345555555554322 34455666666666666666666666654
|
| >3kae_A CDC27, possible protein of nuclear scaffold; tetratricopeptide repeat protein, protein binding; 2.30A {Encephalitozoon cuniculi} | Back alignment and structure |
|---|
Probab=96.22 E-value=0.26 Score=37.26 Aligned_cols=114 Identities=12% Similarity=0.131 Sum_probs=77.1
Q ss_pred ccchHHHHHHHHHHHHcCChHHHHHHHHHHhhcCCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHhh--C--CCChHHHH
Q 012143 163 TRQAVVWNTLGLILLKSGRLQSSISVLSSLLAVDPNNCDCIGNLGIAYFQSGDMEQSAKCFQDLILK--D--QNHPAALI 238 (470)
Q Consensus 163 p~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~--~--p~~~~~~~ 238 (470)
|..++.-..++.++.-.|.|..++-.+.+ -+...+.+.-+.||...+++..|+..++..++- + |+- ++.
T Consensus 30 ~~~~eY~lL~~I~LyyngEY~R~Lf~L~~-----lNT~Ts~YYk~LCy~klKdYkkA~~~le~il~~kvd~d~~~-d~~- 102 (242)
T 3kae_A 30 PCKPEYRMLMSIVLYLNGEYTRALFHLHK-----LNTCTSKYYESLCYKKKKDYKKAIKSLESILEGKVERDPDV-DAR- 102 (242)
T ss_dssp ----CTHHHHHHHHHHTTCHHHHHHHHHT-----CCBHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCSBCCCCC-CHH-
T ss_pred cCChHHHhhhhhhhhhcchHhHHHHHHHh-----cchHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccccCccc-ccc-
Confidence 34445566677788888888888776643 244666777788888888888888888888832 2 221 111
Q ss_pred HHHHHHHhhhcccccccccchhhhhHHHhcCCHHHHHHHHHHHHhcCCCCHH-HHHHHHHHHHHcCChhHHHHHHHHHHh
Q 012143 239 NYAALLLCKYGSVLAGAGANTGEGACLDQASAVNVAKECLLAALKADPKAAH-IWANLANAYYLTGDHRSSGKCLEKAAK 317 (470)
Q Consensus 239 ~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~p~~~~-~~~~la~~~~~~g~~~~A~~~~~~a~~ 317 (470)
+ +..-.+|.+.+ .+..+|.++...|+.++|+.+|.....
T Consensus 103 -~---------------------------------------~~ffvd~~DkEfFy~l~a~lltq~g~r~EaI~y~~~Sf~ 142 (242)
T 3kae_A 103 -I---------------------------------------QEMFVDPGDEEFFESLLGDLCTLSGYREEGIGHYVRSFG 142 (242)
T ss_dssp -H---------------------------------------HTTSCCTTCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred -c---------------------------------------ceeeeccchHHHHHHHHHHHHHHhcCHHHhhhHhhhhcC
Confidence 0 11123565555 456679999999999999999999998
Q ss_pred cCCCcc
Q 012143 318 LEPNCM 323 (470)
Q Consensus 318 ~~p~~~ 323 (470)
..|-.+
T Consensus 143 ~~~lf~ 148 (242)
T 3kae_A 143 KSFLFS 148 (242)
T ss_dssp HCCCHH
T ss_pred Cccccc
Confidence 887644
|
| >3mkq_B Coatomer subunit alpha; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=96.03 E-value=0.066 Score=41.39 Aligned_cols=72 Identities=19% Similarity=0.299 Sum_probs=46.8
Q ss_pred ccCcccHHHHHHHHHHhhhcCccchHHHHHHHHHHHHcCChHHHHHHHHHHhhcCCCChHHHHHHHHHHHHcCCHHHHHH
Q 012143 142 ELEPEELEEILSKLKESMQSDTRQAVVWNTLGLILLKSGRLQSSISVLSSLLAVDPNNCDCIGNLGIAYFQSGDMEQSAK 221 (470)
Q Consensus 142 ~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~la~~~~~~g~~~~A~~ 221 (470)
.++.|+++.|.+..+.. ++...|..+|......|+++-|..+|.++-. +-.+..+|.-.|+.+.-..
T Consensus 15 AL~lg~l~~A~e~a~~l-----~~~~~Wk~Lg~~AL~~gn~~lAe~cy~~~~D--------~~~L~~Ly~~tg~~e~L~k 81 (177)
T 3mkq_B 15 ALEYGNLDAALDEAKKL-----NDSITWERLIQEALAQGNASLAEMIYQTQHS--------FDKLSFLYLVTGDVNKLSK 81 (177)
T ss_dssp HHHTTCHHHHHHHHHHH-----CCHHHHHHHHHHHHHTTCHHHHHHHHHHTTC--------HHHHHHHHHHHTCHHHHHH
T ss_pred HHhcCCHHHHHHHHHHh-----CCHHHHHHHHHHHHHcCChHHHHHHHHHhCC--------HHHHHHHHHHhCCHHHHHH
Confidence 34667778888777654 4567788888888888888888888877422 2334445555666655444
Q ss_pred HHHHH
Q 012143 222 CFQDL 226 (470)
Q Consensus 222 ~~~~~ 226 (470)
.-+.+
T Consensus 82 la~iA 86 (177)
T 3mkq_B 82 MQNIA 86 (177)
T ss_dssp HHHHH
T ss_pred HHHHH
Confidence 44433
|
| >1ya0_A SMG-7 transcript variant 2; alpha-helical repeat, tetratricopetide repeat (TPR), 14-3-3, signaling protein; 2.55A {Homo sapiens} SCOP: a.118.8.1 | Back alignment and structure |
|---|
Probab=96.01 E-value=0.05 Score=50.35 Aligned_cols=79 Identities=20% Similarity=0.097 Sum_probs=73.2
Q ss_pred HHHHHHHHHHHcCChHHHHHHHHHHhhcCCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCChHHHHHHHHHHHh
Q 012143 168 VWNTLGLILLKSGRLQSSISVLSSLLAVDPNNCDCIGNLGIAYFQSGDMEQSAKCFQDLILKDQNHPAALINYAALLLC 246 (470)
Q Consensus 168 ~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~l~~~~~~ 246 (470)
.+..+|++......+..|..+|.+|..+.|++...+..+|.+....|+.-+|+-+|-+++......+.+..++..++..
T Consensus 154 ~l~~LGDL~RY~~~~~~A~~~Y~~A~~~~P~~G~~~nqLavla~~~~~~l~a~y~y~rsl~~~~Pf~~a~~nL~~~f~~ 232 (497)
T 1ya0_A 154 CLVHLGDIARYRNQTSQAESYYRHAAQLVPSNGQPYNQLAILASSKGDHLTTIFYYCRSIAVKFPFPAASTNLQKALSK 232 (497)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTBSHHHHHHHHHHHHTTCHHHHHHHHHHHHSSSBCCHHHHHHHHHHHHH
T ss_pred HHHHcccHHHHHHHHHHHHHHHHHHHHhCCCCCchHHHHHHHHhcccccHHHHHHHHHHHhcCCCChhHHHHHHHHHHH
Confidence 5677999999999999999999999999999999999999999999999999999999998888889998888887764
|
| >3mkq_B Coatomer subunit alpha; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=95.91 E-value=0.42 Score=36.92 Aligned_cols=55 Identities=16% Similarity=0.184 Sum_probs=46.0
Q ss_pred chHHHHHHHHHHHHcCChHHHHHHHHHHhhcCCCChHHHHHHHHHHHHcCCHHHHHHHHHHHH
Q 012143 165 QAVVWNTLGLILLKSGRLQSSISVLSSLLAVDPNNCDCIGNLGIAYFQSGDMEQSAKCFQDLI 227 (470)
Q Consensus 165 ~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~l 227 (470)
+++..+.++ ...|+++.|.+..+.. ++...|..+|......|+++-|..+|+++-
T Consensus 7 D~~~rF~LA---L~lg~l~~A~e~a~~l-----~~~~~Wk~Lg~~AL~~gn~~lAe~cy~~~~ 61 (177)
T 3mkq_B 7 DPHIRFDLA---LEYGNLDAALDEAKKL-----NDSITWERLIQEALAQGNASLAEMIYQTQH 61 (177)
T ss_dssp CHHHHHHHH---HHTTCHHHHHHHHHHH-----CCHHHHHHHHHHHHHTTCHHHHHHHHHHTT
T ss_pred ChHHHHHHH---HhcCCHHHHHHHHHHh-----CCHHHHHHHHHHHHHcCChHHHHHHHHHhC
Confidence 445555544 7889999999988765 568899999999999999999999999874
|
| >1qsa_A Protein (soluble lytic transglycosylase SLT70); alpha-superhelix, transferase; HET: GOL; 1.65A {Escherichia coli} SCOP: a.118.5.1 d.2.1.6 PDB: 1qte_A* 1sly_A* | Back alignment and structure |
|---|
Probab=95.89 E-value=1.3 Score=42.39 Aligned_cols=260 Identities=10% Similarity=-0.009 Sum_probs=135.2
Q ss_pred HHHHHHHhcCCCCcchhhhcccch--hhhhcChhhHHHHHHHHHHhCCCChhHHHHHHHHHHHhCChhHHHHHHHHHHHH
Q 012143 27 SKMDSALEFGVDADGDQSGLGTSS--SSREEKVSSLKTGLVHVARKMPKNAHAHFLLGLMYQRLGQPLKAVSSYEKAEEI 104 (470)
Q Consensus 27 ~~~~~~l~~~p~~~~~~~~~~~~~--~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~ 104 (470)
..+...+...|+.+.......... +...+++......+.. .|.+...-+.........|+..+|....+++...
T Consensus 56 ~ev~~Fl~~~~~~p~~~~Lr~~~l~~l~~~~~w~~~l~~~~~----~p~~~~~~c~~~~A~~~~G~~~~a~~~~~~lW~~ 131 (618)
T 1qsa_A 56 VTVTNFVRANPTLPPARTLQSRFVNELARREDWRGLLAFSPE----KPGTTEAQCNYYYAKWNTGQSEEAWQGAKELWLT 131 (618)
T ss_dssp HHHHHHHHHCTTCHHHHHHHHHHHHHHHHTTCHHHHHHHCCS----CCSSHHHHHHHHHHHHHTTCHHHHHHHHHHHHSC
T ss_pred HHHHHHHHHCCCChhHHHHHHHHHHHHHhCCCHHHHHHhccC----CCCCHHHHHHHHHHHHHcCChhHHHHHHHHHHhC
Confidence 456677777888776655444431 2234555555554432 4777777777888888888877777666665432
Q ss_pred HhhhhcccchhhhHHHHHHhhhccccccccCCCccccccCcccHHHHHHHHHH-------------hhhcCccchH----
Q 012143 105 LLRCEADIARPELLSLVQIHHAQCLLPESSGDNSLDKELEPEELEEILSKLKE-------------SMQSDTRQAV---- 167 (470)
Q Consensus 105 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~-------------~~~~~p~~~~---- 167 (470)
....+.. ...+...+...+.+-...-...+...+..|+...|..+... ++..+|.+..
T Consensus 132 ~~~~p~~-----c~~l~~~~~~~g~lt~~~~~~R~~~al~~~~~~~a~~l~~~l~~~~~~~a~~~~al~~~p~~~~~~~~ 206 (618)
T 1qsa_A 132 GKSQPNA-----CDKLFSVWRASGKQDPLAYLERIRLAMKAGNTGLVTVLAGQMPADYQTIASAIISLANNPNTVLTFAR 206 (618)
T ss_dssp SSCCCTH-----HHHHHHHHHHTTCSCHHHHHHHHHHHHHTTCHHHHHHHHHTCCGGGHHHHHHHHHHHHCGGGHHHHHH
T ss_pred CCCCcHH-----HHHHHHHHHHCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHhCCHHHHHHHHHHHHHHhChHhHHHHHh
Confidence 2111000 00000111100000000000000011222333333222221 1222333221
Q ss_pred ---------HHHHHHHHHHHcCChHHHHHHHHHHhhcCCCChH----HHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCh
Q 012143 168 ---------VWNTLGLILLKSGRLQSSISVLSSLLAVDPNNCD----CIGNLGIAYFQSGDMEQSAKCFQDLILKDQNHP 234 (470)
Q Consensus 168 ---------~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~----~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~ 234 (470)
.....+.......+.+.|...+.+.....+-+.. .+..++.-....+...++...+.+.....++ .
T Consensus 207 ~~~~~~~~~~~~~~~~~rlar~d~~~A~~~~~~~~~~~~~~~~~~~~~~~~ia~~~~~~~~~~~~~~~~~~~~~~~~~-~ 285 (618)
T 1qsa_A 207 TTGATDFTRQMAAVAFASVARQDAENARLMIPSLAQAQQLNEDQIQELRDIVAWRLMGNDVTDEQAKWRDDAIMRSQS-T 285 (618)
T ss_dssp HSCCCHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHTSCSTTCCHHHHHHHHHHHHTCCC-H
T ss_pred ccCCChhhHHHHHHHHHHHHhcCHHHHHHHHHhhhhccCCCHHHHHHHHHHHHHHHHHcCCChHHHHHHHhccccCCC-h
Confidence 1222344444556778888888776543322222 2222333333344355667777765543332 2
Q ss_pred HHHHHHHHHHHhhhcccccccccchhhhhHHHhcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCChhHHHHHHHH
Q 012143 235 AALINYAALLLCKYGSVLAGAGANTGEGACLDQASAVNVAKECLLAALKADPKAAHIWANLANAYYLTGDHRSSGKCLEK 314 (470)
Q Consensus 235 ~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~ 314 (470)
......+...+ +.|+++.|..+|.++-...+......+.+|.++...|+.++|..+|++
T Consensus 286 ~~~e~~~r~Al---------------------r~~d~~~a~~~~~~l~~~~~~~~r~~YW~~ra~~~~g~~~~a~~~~~~ 344 (618)
T 1qsa_A 286 SLIERRVRMAL---------------------GTGDRRGLNTWLARLPMEAKEKDEWRYWQADLLLERGREAEAKEILHQ 344 (618)
T ss_dssp HHHHHHHHHHH---------------------HHTCHHHHHHHHHHSCTTGGGSHHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred HHHHHHHHHHH---------------------HCCCHHHHHHHHHHccccccccHhHHHHHHHHHHHcCCHHHHHHHHHH
Confidence 22222222222 579999999999887664445788899999999999999999999999
Q ss_pred HHh
Q 012143 315 AAK 317 (470)
Q Consensus 315 a~~ 317 (470)
+..
T Consensus 345 ~a~ 347 (618)
T 1qsa_A 345 LMQ 347 (618)
T ss_dssp HHT
T ss_pred Hhc
Confidence 985
|
| >2ff4_A Probable regulatory protein EMBR; winged-helix, tetratricopeptide repeat, beta-sandwich, trans; HET: DNA TPO; 1.90A {Mycobacterium tuberculosis} SCOP: a.4.6.1 a.118.8.3 b.26.1.2 PDB: 2fez_A* | Back alignment and structure |
|---|
Probab=95.48 E-value=0.13 Score=46.24 Aligned_cols=83 Identities=14% Similarity=0.162 Sum_probs=67.9
Q ss_pred ccHHHHHHHHHHhhhcCccc----------------------hHHHHHHHHHHHHcCChHHHHHHHHHHhhcCCCChHHH
Q 012143 146 EELEEILSKLKESMQSDTRQ----------------------AVVWNTLGLILLKSGRLQSSISVLSSLLAVDPNNCDCI 203 (470)
Q Consensus 146 ~~~~~A~~~~~~~~~~~p~~----------------------~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~ 203 (470)
|+.+.|...+.+++...... ..+...++..+...|++.+|+..+..++..+|-+-.++
T Consensus 129 ~~~~~a~~~l~~Al~L~rG~~L~~~~~~~w~~~~r~~l~~~~~~a~~~~~~~~l~~g~~~~a~~~l~~~~~~~P~~E~~~ 208 (388)
T 2ff4_A 129 GRFEQASRHLSAALREWRGPVLDDLRDFQFVEPFATALVEDKVLAHTAKAEAEIACGRASAVIAELEALTFEHPYREPLW 208 (388)
T ss_dssp TCHHHHHHHHHHHHTTCCSSTTGGGTTSTTHHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHH
T ss_pred CCHHHHHHHHHHHHHhcCCCCCCCCCchhHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHH
Confidence 56677777777777653211 12344567788899999999999999999999999999
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHHHh
Q 012143 204 GNLGIAYFQSGDMEQSAKCFQDLIL 228 (470)
Q Consensus 204 ~~la~~~~~~g~~~~A~~~~~~~l~ 228 (470)
..+..++...|+..+|+..|+++.+
T Consensus 209 ~~lm~al~~~Gr~~~Al~~y~~~r~ 233 (388)
T 2ff4_A 209 TQLITAYYLSDRQSDALGAYRRVKT 233 (388)
T ss_dssp HHHHHHHHTTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 9999999999999999999998754
|
| >4b4t_R RPN7, 26S proteasome regulatory subunit RPN7; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=95.33 E-value=0.2 Score=45.77 Aligned_cols=124 Identities=17% Similarity=0.109 Sum_probs=87.1
Q ss_pred ccHHHHHHHHHHhhhcCccchHHHHHHHHHHHHcCChHHHHHHHHHHhhcCC---CChHHHHHHHHHHHHcCCHHHHHHH
Q 012143 146 EELEEILSKLKESMQSDTRQAVVWNTLGLILLKSGRLQSSISVLSSLLAVDP---NNCDCIGNLGIAYFQSGDMEQSAKC 222 (470)
Q Consensus 146 ~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~---~~~~~~~~la~~~~~~g~~~~A~~~ 222 (470)
..+++.+..+.+-......-..++..+|..|...|++++|.++|.++..... ...+.+.....++...+++..+...
T Consensus 111 ~~l~~~~~~~~~~~~~e~e~~~~~~~la~~~~~~Gd~~~A~~~~~~~~~~~~~~~~kid~~l~~irl~l~~~d~~~~~~~ 190 (429)
T 4b4t_R 111 KELNEKIQKLEEDDEGELEQAQAWINLGEYYAQIGDKDNAEKTLGKSLSKAISTGAKIDVMLTIARLGFFYNDQLYVKEK 190 (429)
T ss_dssp HHHHHHHHHHHHCCSCCCCCSSCCHHHHHHHHHHCCCTTHHHHHHHHHHHHTCCCSHHHHHHHHHHHHHHHTCHHHHHHH
T ss_pred HHHHHHHHHHHhhccccHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHhccHHHHHHH
Confidence 4455555554442223334456888999999999999999999999887533 3357888889999999999999999
Q ss_pred HHHHHhhCC--CChHHHHHHHHHHHhhhcccccccccchhhhhHHHhcCCHHHHHHHHHHHHhcCC
Q 012143 223 FQDLILKDQ--NHPAALINYAALLLCKYGSVLAGAGANTGEGACLDQASAVNVAKECLLAALKADP 286 (470)
Q Consensus 223 ~~~~l~~~p--~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~p 286 (470)
+.++-.... .++..... -.++ .|.++...++|..|...|..++....
T Consensus 191 ~~ka~~~~~~~~d~~~~~~-lk~~----------------~gl~~l~~r~f~~Aa~~f~e~~~t~~ 239 (429)
T 4b4t_R 191 LEAVNSMIEKGGDWERRNR-YKTY----------------YGIHCLAVRNFKEAAKLLVDSLATFT 239 (429)
T ss_dssp HHHHHHHHTTCCCTHHHHH-HHHH----------------HHHGGGGTSCHHHHHHHHHHHHHHSC
T ss_pred HHHHHHhhhcCCCHHHHHH-HHHH----------------HHHHHHHhChHHHHHHHHHHHhccCC
Confidence 999875532 23322211 1122 24555678999999999988876543
|
| >2ff4_A Probable regulatory protein EMBR; winged-helix, tetratricopeptide repeat, beta-sandwich, trans; HET: DNA TPO; 1.90A {Mycobacterium tuberculosis} SCOP: a.4.6.1 a.118.8.3 b.26.1.2 PDB: 2fez_A* | Back alignment and structure |
|---|
Probab=95.03 E-value=0.65 Score=41.74 Aligned_cols=90 Identities=11% Similarity=0.011 Sum_probs=71.6
Q ss_pred HHHHHHcCChHHHHHHHHHHhhcCCC--------C--------------hHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC
Q 012143 173 GLILLKSGRLQSSISVLSSLLAVDPN--------N--------------CDCIGNLGIAYFQSGDMEQSAKCFQDLILKD 230 (470)
Q Consensus 173 ~~~~~~~~~~~~A~~~~~~a~~~~~~--------~--------------~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~ 230 (470)
|......|+.+.|...+.+++.+... . ..+...++..+...|++.+|+..+.+++..+
T Consensus 122 ~~~~~~~~~~~~a~~~l~~Al~L~rG~~L~~~~~~~w~~~~r~~l~~~~~~a~~~~~~~~l~~g~~~~a~~~l~~~~~~~ 201 (388)
T 2ff4_A 122 GVHAAAAGRFEQASRHLSAALREWRGPVLDDLRDFQFVEPFATALVEDKVLAHTAKAEAEIACGRASAVIAELEALTFEH 201 (388)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHTTCCSSTTGGGTTSTTHHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS
T ss_pred HHHHHhCCCHHHHHHHHHHHHHhcCCCCCCCCCchhHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC
Confidence 34444568888899999998886321 1 1234566778889999999999999999999
Q ss_pred CCChHHHHHHHHHHHhhhcccccccccchhhhhHHHhcCCHHHHHHHHHHHHh
Q 012143 231 QNHPAALINYAALLLCKYGSVLAGAGANTGEGACLDQASAVNVAKECLLAALK 283 (470)
Q Consensus 231 p~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~ 283 (470)
|-+...+..+..++. ..|+..+|+..|+++-.
T Consensus 202 P~~E~~~~~lm~al~---------------------~~Gr~~~Al~~y~~~r~ 233 (388)
T 2ff4_A 202 PYREPLWTQLITAYY---------------------LSDRQSDALGAYRRVKT 233 (388)
T ss_dssp TTCHHHHHHHHHHHH---------------------TTTCHHHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHH---------------------HcCCHHHHHHHHHHHHH
Confidence 999999988888887 79999999999987643
|
| >4fhn_B Nucleoporin NUP120; protein complex,structural protein,nuclear pore complex,mRNA transport,protein transport, WD repeat; 6.99A {Schizosaccharomyces pombe 972h-} | Back alignment and structure |
|---|
Probab=95.00 E-value=3.1 Score=43.42 Aligned_cols=138 Identities=15% Similarity=0.056 Sum_probs=76.0
Q ss_pred HHHHHHHHHcCChHHHHHHHHHHhhcCCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC-CCC--hHHHHHHHHHHHh
Q 012143 170 NTLGLILLKSGRLQSSISVLSSLLAVDPNNCDCIGNLGIAYFQSGDMEQSAKCFQDLILKD-QNH--PAALINYAALLLC 246 (470)
Q Consensus 170 ~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~-p~~--~~~~~~l~~~~~~ 246 (470)
..+...+...+.++-+.+ .+...|.++...+.+|.++...|++++|..+|+++-..- +.. ......+..+...
T Consensus 816 ~~l~~~l~~~~~~~~~~~----l~~~~~~~~~~~yl~g~~~L~~ge~~~A~~~F~kaa~~~~~~~~l~~~~~~~~~~~~~ 891 (1139)
T 4fhn_B 816 TELVEKLFLFKQYNACMQ----LIGWLNSDPIAVYLKALIYLKSKEAVKAVRCFKTTSLVLYSHTSQFAVLREFQEIAEK 891 (1139)
T ss_dssp HHHHHHHHHHSCTTHHHH----HHHHSCCCHHHHHHHHHHHHHTTCHHHHHHHHHTCCCSCTTCCCSCSSHHHHHHHHHT
T ss_pred HHHHHHHHHhhhHHHHHH----HhhhccCCcHHHHHHHHHHHhcCCHHHHHHHHHHHhhhhcccchhhhhhccccccccc
Confidence 345556777788776654 334567777788999999999999999999999874321 111 1111111111000
Q ss_pred hhcccccccccchhhhhHHHhcCCHHHHHHHHHHHHhcCCC-CH----HHHHHHHHHHHHcCChhHHHHHH
Q 012143 247 KYGSVLAGAGANTGEGACLDQASAVNVAKECLLAALKADPK-AA----HIWANLANAYYLTGDHRSSGKCL 312 (470)
Q Consensus 247 ~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~p~-~~----~~~~~la~~~~~~g~~~~A~~~~ 312 (470)
..........+..+..++.+.+.++.++++.+.+++..+. +. ..|.++-..+...|+|++|...+
T Consensus 892 -~~~~~~l~~YY~hv~~LFe~~~~~~~vi~fa~lAi~~~~~~~~~~~~~l~~~iFk~~L~l~~ye~Ay~aL 961 (1139)
T 4fhn_B 892 -YHHQNLLSCYYLHLSKKLFEESAYIDALEFSLLADASKETDDEDLSIAITHETLKTACAAGKFDAAHVAL 961 (1139)
T ss_dssp -TTSCCSSHHHHHHHHHHHHHTSCCHHHHHHHHHHHHHCCSCCHHHHHHHHHHHHHHHHHHCCSGGGGHHH
T ss_pred -ccccccHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhccCCChhhHHHHHHHHHHHHHhhCCHHHHHHHH
Confidence 0000000112223344555666666666666666665432 21 14555566666666666665555
|
| >4b4t_P 26S proteasome regulatory subunit RPN5; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=94.90 E-value=2.2 Score=39.02 Aligned_cols=199 Identities=10% Similarity=-0.004 Sum_probs=113.2
Q ss_pred CcccHHHHHHHHHHhhhc------CccchHHHHHHHHHHHHcCChHHHHHHHHHHhhcCCCChHHHHHHHHHHHHcCCHH
Q 012143 144 EPEELEEILSKLKESMQS------DTRQAVVWNTLGLILLKSGRLQSSISVLSSLLAVDPNNCDCIGNLGIAYFQSGDME 217 (470)
Q Consensus 144 ~~~~~~~A~~~~~~~~~~------~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~la~~~~~~g~~~ 217 (470)
..|++..|++.+...-+. .+....+...+..++...|+|+...+.+.-..........+...+.....
T Consensus 28 ~~~~~~~a~e~ll~lEK~~r~~~d~~s~~r~l~~iv~l~~~~~~~~~l~e~i~~Lskkr~qlk~ai~~~V~~~~------ 101 (445)
T 4b4t_P 28 AQNDCNSALDQLLVLEKKTRQASDLASSKEVLAKIVDLLASRNKWDDLNEQLTLLSKKHGQLKLSIQYMIQKVM------ 101 (445)
T ss_dssp CHHHHHHHHHHHHHHHHHHSSSCSTTTCHHHHHHHHHHHHHHSCHHHHHHHHHHHHTTTTTSHHHHHHHHHHHH------
T ss_pred HcCCHHHHHHHHHHHHHHhhhccchhhHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHhhhhHHHHHHHHHHHH------
Confidence 457788888877444322 23345677788889999999998877776555444333333222221111
Q ss_pred HHHHHHHHHHhhCCCC-hHHHHHHHHHHHhh-hccccc---ccccchhhhhHHHhcCCHHHHHHHHHHHHhcC----CC-
Q 012143 218 QSAKCFQDLILKDQNH-PAALINYAALLLCK-YGSVLA---GAGANTGEGACLDQASAVNVAKECLLAALKAD----PK- 287 (470)
Q Consensus 218 ~A~~~~~~~l~~~p~~-~~~~~~l~~~~~~~-~~~~~~---~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~----p~- 287 (470)
.+ +...|.. ......+...+... .+...- .+.....++.++...|++.+|...+.....-. +.
T Consensus 102 ---~~----l~~~~~~d~~~~~~~i~~l~~vte~kiflE~erarl~~~La~i~e~~g~~~eA~~iL~~l~~Et~~~~~~~ 174 (445)
T 4b4t_P 102 ---EY----LKSSKSLDLNTRISVIETIRVVTENKIFVEVERARVTKDLVEIKKEEGKIDEAADILCELQVETYGSMEMS 174 (445)
T ss_dssp ---HH----HHHHCTTHHHHHHHHHHCCSSSSSCCCCCCHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHCSSSCHH
T ss_pred ---HH----HhcCCchhHHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHhcccHH
Confidence 11 1111111 00111110000000 000000 01112336777889999999999999875321 11
Q ss_pred -CHHHHHHHHHHHHHcCChhHHHHHHHHHHhc---CCCcccHHHHHHHHHHHHhhhccCchHHhhhhHHHHHHHhhcCCC
Q 012143 288 -AAHIWANLANAYYLTGDHRSSGKCLEKAAKL---EPNCMSTRYAVAVSRIKDAERSQEPTEQLSWAGNEMASILREGDP 363 (470)
Q Consensus 288 -~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~---~p~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 363 (470)
-.+.+....+++...+++.+|...+.++... .+..+. .
T Consensus 175 ~kve~~l~q~rl~l~~~d~~~a~~~~~ki~~~~~~~~~~~~--l------------------------------------ 216 (445)
T 4b4t_P 175 EKIQFILEQMELSILKGDYSQATVLSRKILKKTFKNPKYES--L------------------------------------ 216 (445)
T ss_dssp HHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHSSCCHH--H------------------------------------
T ss_pred HHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhhcccCCcHH--H------------------------------------
Confidence 3567888899999999999999999887431 111111 0
Q ss_pred CCCCcHHHHHHHHHHHhccccHHHHHHHHHHHhc
Q 012143 364 VQIEPPIAWAGFAAVQKTHHEVAAAFETEENELS 397 (470)
Q Consensus 364 ~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~ 397 (470)
....+...|.++...++|.+|...|.....
T Consensus 217 ----k~~~~~~~~~~~~~e~~y~~a~~~y~e~~~ 246 (445)
T 4b4t_P 217 ----KLEYYNLLVKISLHKREYLEVAQYLQEIYQ 246 (445)
T ss_dssp ----HHHHHHHHHHHHHHHCCHHHHHHHHHHHHH
T ss_pred ----HHHHHHHHHHHHHHhhhHHHHHHHHHHHHh
Confidence 123566778888888899988888877544
|
| >3mkq_A Coatomer beta'-subunit; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae} PDB: 2ynp_A | Back alignment and structure |
|---|
Probab=94.89 E-value=0.48 Score=47.46 Aligned_cols=113 Identities=12% Similarity=0.006 Sum_probs=68.9
Q ss_pred hhhhcChhhHHHHHHHHHHhCCCChhHHHHHHHHHHHhCChhHHHHHHHHHHHHHhhhhcccchhhhHHHHHHhhhcccc
Q 012143 51 SSREEKVSSLKTGLVHVARKMPKNAHAHFLLGLMYQRLGQPLKAVSSYEKAEEILLRCEADIARPELLSLVQIHHAQCLL 130 (470)
Q Consensus 51 ~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 130 (470)
....|+++.|.+..+ ..+++..|..+|..+.+.|+++.|+.+|.++-.
T Consensus 662 ~l~~~~~~~A~~~~~-----~~~~~~~W~~la~~al~~~~~~~A~~~y~~~~d--------------------------- 709 (814)
T 3mkq_A 662 ALKVGQLTLARDLLT-----DESAEMKWRALGDASLQRFNFKLAIEAFTNAHD--------------------------- 709 (814)
T ss_dssp HHHHTCHHHHHHHHT-----TCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHTC---------------------------
T ss_pred hhhcCCHHHHHHHHH-----hhCcHhHHHHHHHHHHHcCCHHHHHHHHHHccC---------------------------
Confidence 445667777766653 346677888888888888888888888887532
Q ss_pred ccccCCCccccccCcccHHHHHHHHHHhhhcCccchHHHHHHHHHHHHcCChHHHHHHHHHHhhcCCCChHHHHHHHHHH
Q 012143 131 PESSGDNSLDKELEPEELEEILSKLKESMQSDTRQAVVWNTLGLILLKSGRLQSSISVLSSLLAVDPNNCDCIGNLGIAY 210 (470)
Q Consensus 131 ~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~la~~~ 210 (470)
++.+..++.. ..+.+.+..++......|++..|..+|.+. .+ .-....+|
T Consensus 710 -----------------~~~l~~l~~~-----~~~~~~~~~~~~~a~~~~~~~~A~~~~~~~-----g~---~~~a~~~~ 759 (814)
T 3mkq_A 710 -----------------LESLFLLHSS-----FNNKEGLVTLAKDAETTGKFNLAFNAYWIA-----GD---IQGAKDLL 759 (814)
T ss_dssp -----------------HHHHHHHHHH-----TTCHHHHHHHHHHHHHTTCHHHHHHHHHHH-----TC---HHHHHHHH
T ss_pred -----------------hhhhHHHHHH-----cCCHHHHHHHHHHHHHcCchHHHHHHHHHc-----CC---HHHHHHHH
Confidence 2222222221 234445556677777777777777666542 11 12233456
Q ss_pred HHcCCHHHHHHHHHH
Q 012143 211 FQSGDMEQSAKCFQD 225 (470)
Q Consensus 211 ~~~g~~~~A~~~~~~ 225 (470)
...+++++|+..-++
T Consensus 760 ~~~~~~~~A~~lA~~ 774 (814)
T 3mkq_A 760 IKSQRFSEAAFLGST 774 (814)
T ss_dssp HHTTCHHHHHHHHHH
T ss_pred HHcCChHHHHHHHHH
Confidence 667777777766554
|
| >3spa_A Mtrpol, DNA-directed RNA polymerase, mitochondrial; single-subunit DNA-dependent RNA polymerase in mitochondria, transferase; 2.50A {Homo sapiens} | Back alignment and structure |
|---|
Probab=94.88 E-value=0.45 Score=47.79 Aligned_cols=99 Identities=7% Similarity=-0.017 Sum_probs=73.8
Q ss_pred hHHHHHHHHHHHHcCChHHHHHHHHHHhhc----CCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC-CCChHHHHHH
Q 012143 166 AVVWNTLGLILLKSGRLQSSISVLSSLLAV----DPNNCDCIGNLGIAYFQSGDMEQSAKCFQDLILKD-QNHPAALINY 240 (470)
Q Consensus 166 ~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~----~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~-p~~~~~~~~l 240 (470)
...+..+...|.+.|+.++|...|....+. -.-+...|..+...|.+.|+.++|.+.|+++.... ..+...+..+
T Consensus 127 ~~TynaLIdglcK~G~leeA~~Lf~eM~~m~~kG~~PdvvTYNtLI~Glck~G~~~eA~~Lf~eM~~~G~~PDvvTYntL 206 (1134)
T 3spa_A 127 QQRLLAFFKCCLLTDQLPLAHHLLVVHHGQRQKRKLLTLDMYNAVMLGWARQGAFKELVYVLFMVKDAGLTPDLLSYAAA 206 (1134)
T ss_dssp HHHHHHHHHHHHHHTCHHHHHHHHHHHHHSHHHHTTCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHTTCCCCHHHHHHH
T ss_pred HHHHHHHHHHHHhCCCHHHHHHHHHHHHHHhhcCCCCCHhHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCcHHHHHHH
Confidence 346778888999999999999999765432 23357788999999999999999999999987643 2345555555
Q ss_pred HHHHHhhhcccccccccchhhhhHHHhcCC-HHHHHHHHHHHHhcC
Q 012143 241 AALLLCKYGSVLAGAGANTGEGACLDQASA-VNVAKECLLAALKAD 285 (470)
Q Consensus 241 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~A~~~~~~~~~~~ 285 (470)
...+. +.|+ .++|.++|++.....
T Consensus 207 I~glc---------------------K~G~~~e~A~~Ll~EM~~kG 231 (1134)
T 3spa_A 207 LQCMG---------------------RQDQDAGTIERCLEQMSQEG 231 (1134)
T ss_dssp HHHHH---------------------HHTCCHHHHHHHHHHHHHHT
T ss_pred HHHHH---------------------hCCCcHHHHHHHHHHHHHcC
Confidence 55544 5776 478889999888754
|
| >1ya0_A SMG-7 transcript variant 2; alpha-helical repeat, tetratricopetide repeat (TPR), 14-3-3, signaling protein; 2.55A {Homo sapiens} SCOP: a.118.8.1 | Back alignment and structure |
|---|
Probab=94.34 E-value=0.37 Score=44.63 Aligned_cols=80 Identities=11% Similarity=0.010 Sum_probs=69.7
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCChHHHHHHHHHHHhhhcccccccccchhhhhHHHhcCCHHHHHHHHHH
Q 012143 201 DCIGNLGIAYFQSGDMEQSAKCFQDLILKDQNHPAALINYAALLLCKYGSVLAGAGANTGEGACLDQASAVNVAKECLLA 280 (470)
Q Consensus 201 ~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~ 280 (470)
..+..+|.+......+..|..+|.+|..+.|++...+..+|.+.. ..|+.-+|+-+|.+
T Consensus 153 r~l~~LGDL~RY~~~~~~A~~~Y~~A~~~~P~~G~~~nqLavla~---------------------~~~~~l~a~y~y~r 211 (497)
T 1ya0_A 153 HCLVHLGDIARYRNQTSQAESYYRHAAQLVPSNGQPYNQLAILAS---------------------SKGDHLTTIFYYCR 211 (497)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTBSHHHHHHHHHHH---------------------HTTCHHHHHHHHHH
T ss_pred HHHHHcccHHHHHHHHHHHHHHHHHHHHhCCCCCchHHHHHHHHh---------------------cccccHHHHHHHHH
Confidence 367788999999999999999999999999999999999998887 57888899999999
Q ss_pred HHhcCCCCHHHHHHHHHHHHH
Q 012143 281 ALKADPKAAHIWANLANAYYL 301 (470)
Q Consensus 281 ~~~~~p~~~~~~~~la~~~~~ 301 (470)
++......+.+..++...+..
T Consensus 212 sl~~~~Pf~~a~~nL~~~f~~ 232 (497)
T 1ya0_A 212 SIAVKFPFPAASTNLQKALSK 232 (497)
T ss_dssp HHSSSBCCHHHHHHHHHHHHH
T ss_pred HHhcCCCChhHHHHHHHHHHH
Confidence 998777788888888887765
|
| >3lvg_A Clathrin heavy chain 1; SELF assembly, coated PIT, cytoplasmic vesicle, membrane, Ca structural protein; 7.94A {Bos taurus} PDB: 3lvh_A | Back alignment and structure |
|---|
Probab=94.21 E-value=9.5e-05 Score=66.25 Aligned_cols=226 Identities=12% Similarity=0.033 Sum_probs=142.8
Q ss_pred CCCcchhhhcccchhhhhcChhhHHHHHHHHHHhCCCChhHHHHHHHHHHHhCChhHHHHHHHHHHHHHhhhhcccchhh
Q 012143 37 VDADGDQSGLGTSSSSREEKVSSLKTGLVHVARKMPKNAHAHFLLGLMYQRLGQPLKAVSSYEKAEEILLRCEADIARPE 116 (470)
Q Consensus 37 p~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~ 116 (470)
-+.+..|..+|.. .+..+...+|++.|-+ .+++..+.....+..+.|++++=+.++.-+-+...+ |.
T Consensus 51 ~n~p~VWs~LgkA-qL~~~~v~eAIdsyIk-----A~Dps~y~eVi~~A~~~~~~edLv~yL~MaRk~~ke-------~~ 117 (624)
T 3lvg_A 51 CNEPAVWSQLAKA-QLQKGMVKEAIDSYIK-----ADDPSSYMEVVQAANTSGNWEELVKYLQMARKKARE-------SY 117 (624)
T ss_dssp CCCCCCSSSHHHH-TTTSSSCTTTTTSSCC-----CSCCCSSSHHHHHTTTSSCCTTHHHHHHTTSTTCCS-------TT
T ss_pred hCCccHHHHHHHH-HHccCchHHHHHHHHh-----CCChHHHHHHHHHHHhCCCHHHHHHHHHHHHHHhcc-------cc
Confidence 3577899999999 9999999999998864 455555666667777889999999988877653211 11
Q ss_pred hHHHHHHhhhccccccccCCCccccccCcccHHHHHHHHHHhhhcCccchHHHHHHHHHHHHcCChHHHHHHHHHHhhcC
Q 012143 117 LLSLVQIHHAQCLLPESSGDNSLDKELEPEELEEILSKLKESMQSDTRQAVVWNTLGLILLKSGRLQSSISVLSSLLAVD 196 (470)
Q Consensus 117 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~ 196 (470)
.- ..+..+|...++. ++ ++..+ ..|+.+. ....|.-++..|.|+.|.-.|...
T Consensus 118 ID------teLi~ayAk~~rL--------~e-------lEefl-~~~N~A~-iq~VGDrcf~e~lYeAAKilys~i---- 170 (624)
T 3lvg_A 118 VE------TELIFALAKTNRL--------AE-------LEEFI-NGPNNAH-IQQVGDRCYDEKMYDAAKLLYNNV---- 170 (624)
T ss_dssp TT------HHHHHHHHTSCSS--------ST-------TTSTT-SCCSSSC-THHHHHHHHHSCCSTTSSTTGGGS----
T ss_pred cH------HHHHHHHHhhCcH--------HH-------HHHHH-cCCCccc-HHHHHHHHHHccCHHHHHHHHHhC----
Confidence 11 1112222222221 00 00111 1244333 346778888888888777666542
Q ss_pred CCChHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCChHHHHHHHHHHHhhhccccc---------ccccchhhhhHHHh
Q 012143 197 PNNCDCIGNLGIAYFQSGDMEQSAKCFQDLILKDQNHPAALINYAALLLCKYGSVLA---------GAGANTGEGACLDQ 267 (470)
Q Consensus 197 ~~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~l~~~~~~~~~~~~~---------~~~~~~~~~~~~~~ 267 (470)
.-|..|+.++..+|+|..|++.-+++ +++..|...........+..++ .++-...+-..|..
T Consensus 171 ----sN~akLAstLV~L~~yq~AVdaArKA-----ns~ktWKeV~~ACvd~~EfrLAqicGLniIvhadeL~elv~~YE~ 241 (624)
T 3lvg_A 171 ----SNFGRLASTLVHLGEYQAAVDGARKA-----NSTRTWKEVCFACVDGKEFRLAQMCGLHIVVHADELEELINYYQD 241 (624)
T ss_dssp ----CCCTTTSSSSSSCSGGGSSTTTTTTC-----CSSCSHHHHTHHHHHSCTTTTTTHHHHHHHCCSSCCSGGGSSSST
T ss_pred ----ccHHHHHHHHHHHHHHHHHHHHHHhc-----CChhHHHHHHHHHhCchHHHHHHHhcchhcccHHHHHHHHHHHHh
Confidence 22345667777777777777666554 3445555555555543333222 24444556677889
Q ss_pred cCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCChhHHHHHH
Q 012143 268 ASAVNVAKECLLAALKADPKAAHIWANLANAYYLTGDHRSSGKCL 312 (470)
Q Consensus 268 ~~~~~~A~~~~~~~~~~~p~~~~~~~~la~~~~~~g~~~~A~~~~ 312 (470)
.|.+++-+..++.++.+..-.......||.+|.+- +.++-.+++
T Consensus 242 ~G~f~ELIsLlEaglglErAHmGmFTELaILYsKY-~PeKlmEHl 285 (624)
T 3lvg_A 242 RGYFEELITMLEAALGLERAHMGMFTELAILYSKF-KPQKMREHL 285 (624)
T ss_dssp TCCCTTSTTTHHHHTTSTTCCHHHHHHHHHHHHSS-CTTHHHHHH
T ss_pred CCCHHHHHHHHHHHhCCCchhHHHHHHHHHHHHhc-CHHHHHHHH
Confidence 99999999999999998888899999999888753 344444444
|
| >3spa_A Mtrpol, DNA-directed RNA polymerase, mitochondrial; single-subunit DNA-dependent RNA polymerase in mitochondria, transferase; 2.50A {Homo sapiens} | Back alignment and structure |
|---|
Probab=94.08 E-value=0.89 Score=45.75 Aligned_cols=91 Identities=10% Similarity=0.029 Sum_probs=74.3
Q ss_pred ccccCcccHHHHHHHHHHhhhc----CccchHHHHHHHHHHHHcCChHHHHHHHHHHhhcC-CCChHHHHHHHHHHHHcC
Q 012143 140 DKELEPEELEEILSKLKESMQS----DTRQAVVWNTLGLILLKSGRLQSSISVLSSLLAVD-PNNCDCIGNLGIAYFQSG 214 (470)
Q Consensus 140 ~~~~~~~~~~~A~~~~~~~~~~----~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~la~~~~~~g 214 (470)
+.+.+.|+.++|..+|..+.+. -..+...|..+...|.+.|+.++|.+.|++..+.. .-+...|..+..++.+.|
T Consensus 135 dglcK~G~leeA~~Lf~eM~~m~~kG~~PdvvTYNtLI~Glck~G~~~eA~~Lf~eM~~~G~~PDvvTYntLI~glcK~G 214 (1134)
T 3spa_A 135 KCCLLTDQLPLAHHLLVVHHGQRQKRKLLTLDMYNAVMLGWARQGAFKELVYVLFMVKDAGLTPDLLSYAAALQCMGRQD 214 (1134)
T ss_dssp HHHHHHTCHHHHHHHHHHHHHSHHHHTTCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHTTCCCCHHHHHHHHHHHHHHT
T ss_pred HHHHhCCCHHHHHHHHHHHHHHhhcCCCCCHhHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCcHHHHHHHHHHHHhCC
Confidence 3577999999999999775432 23457889999999999999999999999987752 235778888888999999
Q ss_pred CH-HHHHHHHHHHHhhC
Q 012143 215 DM-EQSAKCFQDLILKD 230 (470)
Q Consensus 215 ~~-~~A~~~~~~~l~~~ 230 (470)
+. ++|.+.|+++....
T Consensus 215 ~~~e~A~~Ll~EM~~kG 231 (1134)
T 3spa_A 215 QDAGTIERCLEQMSQEG 231 (1134)
T ss_dssp CCHHHHHHHHHHHHHHT
T ss_pred CcHHHHHHHHHHHHHcC
Confidence 84 78899999998754
|
| >4fhn_B Nucleoporin NUP120; protein complex,structural protein,nuclear pore complex,mRNA transport,protein transport, WD repeat; 6.99A {Schizosaccharomyces pombe 972h-} | Back alignment and structure |
|---|
Probab=93.95 E-value=2.1 Score=44.64 Aligned_cols=220 Identities=11% Similarity=0.079 Sum_probs=122.3
Q ss_pred hhhhcChhhHHHHHHHHHHhCCCChhHHHHHHHHHHHhCChhHHHHHHHHHHHHHhhhhcccchhhhHHHHHHhhhcccc
Q 012143 51 SSREEKVSSLKTGLVHVARKMPKNAHAHFLLGLMYQRLGQPLKAVSSYEKAEEILLRCEADIARPELLSLVQIHHAQCLL 130 (470)
Q Consensus 51 ~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 130 (470)
+...+.++.+.. .+..-|.++...+.+|.++...|++++|..+|+++-.......
T Consensus 822 l~~~~~~~~~~~----l~~~~~~~~~~~yl~g~~~L~~ge~~~A~~~F~kaa~~~~~~~--------------------- 876 (1139)
T 4fhn_B 822 LFLFKQYNACMQ----LIGWLNSDPIAVYLKALIYLKSKEAVKAVRCFKTTSLVLYSHT--------------------- 876 (1139)
T ss_dssp HHHHSCTTHHHH----HHHHSCCCHHHHHHHHHHHHHTTCHHHHHHHHHTCCCSCTTCC---------------------
T ss_pred HHHhhhHHHHHH----HhhhccCCcHHHHHHHHHHHhcCCHHHHHHHHHHHhhhhcccc---------------------
Confidence 445555655544 3345678888889999999999999999999988632100000
Q ss_pred ccccCCCccccccCcccHHHHHHHHHHhhhcCccchHHHHHHHHHHHHcCChHHHHHHHHHHhhcCCC-Ch----HHHHH
Q 012143 131 PESSGDNSLDKELEPEELEEILSKLKESMQSDTRQAVVWNTLGLILLKSGRLQSSISVLSSLLAVDPN-NC----DCIGN 205 (470)
Q Consensus 131 ~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~-~~----~~~~~ 205 (470)
........ ..............+..|..+..++...|.++.+++.-+.|++..+. +. ..|..
T Consensus 877 ------------~l~~~~~~-~~~~~~~~~~~~~l~~YY~hv~~LFe~~~~~~~vi~fa~lAi~~~~~~~~~~~~~l~~~ 943 (1139)
T 4fhn_B 877 ------------SQFAVLRE-FQEIAEKYHHQNLLSCYYLHLSKKLFEESAYIDALEFSLLADASKETDDEDLSIAITHE 943 (1139)
T ss_dssp ------------CSCSSHHH-HHHHHHTTTSCCSSHHHHHHHHHHHHHTSCCHHHHHHHHHHHHHCCSCCHHHHHHHHHH
T ss_pred ------------hhhhhhcc-cccccccccccccHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhccCCChhhHHHHHHH
Confidence 00000011 11111111112223456777888899999999999999999987543 32 25677
Q ss_pred HHHHHHHcCCHHHHHHHHHHHHhhCCCChHHHHHHHHHHHhhhcccccccccchhhhhHHHhcCCHHHHHHHHHHHH-hc
Q 012143 206 LGIAYFQSGDMEQSAKCFQDLILKDQNHPAALINYAALLLCKYGSVLAGAGANTGEGACLDQASAVNVAKECLLAAL-KA 284 (470)
Q Consensus 206 la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~-~~ 284 (470)
+-..+...|+|++|...+...-.. ......+..+...+.....- .. + .-+--.|..++-.+.+..-. ..
T Consensus 944 iFk~~L~l~~ye~Ay~aL~~~pd~-~~r~~cLr~LV~~lce~~~~-----~~---L-~~lpf~gl~~~Vd~IL~~kAr~~ 1013 (1139)
T 4fhn_B 944 TLKTACAAGKFDAAHVALMVLSTT-PLKKSCLLDFVNQLTKQGKI-----NQ---L-LNYSMPTLRQDVDNLLERKAFQM 1013 (1139)
T ss_dssp HHHHHHHHCCSGGGGHHHHHHHHS-SSCHHHHHHHHHHHHHHCCH-----HH---H-HHHTTTSCHHHHHHHHHHHHHHH
T ss_pred HHHHHHhhCCHHHHHHHHHhCCCH-HHHHHHHHHHHHHHHhCCCh-----hh---h-hCCCCccHHHHHHHHHHHHHHhC
Confidence 778888999999998888654321 22233444443333321000 00 0 00011344444444443211 11
Q ss_pred -CCC-CHHHHHHHHHHHHHcCChhHHHH-HHHHHHhc
Q 012143 285 -DPK-AAHIWANLANAYYLTGDHRSSGK-CLEKAAKL 318 (470)
Q Consensus 285 -~p~-~~~~~~~la~~~~~~g~~~~A~~-~~~~a~~~ 318 (470)
++. .+..|..|=..+...|++..|.. .|+++.++
T Consensus 1014 ~~~~~~p~Yy~iLYs~ri~r~dyR~AA~vmYe~~~RL 1050 (1139)
T 4fhn_B 1014 INVESQPCWYNILFSWRYKHQNYRDAAAIIYEKLSRY 1050 (1139)
T ss_dssp HHHCCSTHHHHHHHHHHHHHHTTSCHHHHHHHHHHHH
T ss_pred CccccCCCHHHHhHhhhhccCChHHHHHHHHHHHHHh
Confidence 222 24555556666677888876654 56776654
|
| >3lpz_A GET4 (YOR164C homolog); protein targeting, tail-anchored protein biogenesis, GET PAT GET5 binding, protein transport; 1.98A {Chaetomium thermophilum} | Back alignment and structure |
|---|
Probab=93.94 E-value=2.8 Score=36.22 Aligned_cols=79 Identities=8% Similarity=0.150 Sum_probs=50.5
Q ss_pred HHHHHHHHHhhhcCccchHHHHHHHHHHHHcCChHHHHHHHHHHh----------------hcCCCChHHHHHHHH-HHH
Q 012143 149 EEILSKLKESMQSDTRQAVVWNTLGLILLKSGRLQSSISVLSSLL----------------AVDPNNCDCIGNLGI-AYF 211 (470)
Q Consensus 149 ~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~----------------~~~~~~~~~~~~la~-~~~ 211 (470)
.+|+.+-.+.-...-.++..+..+|..|...+++.+|..+|-..- +..|...+.+...+. .|.
T Consensus 119 ~~ai~WS~~~g~~~~Gdp~LH~~ig~~~~~e~~~~~Ae~H~ilg~~~s~~~~a~mL~ew~~~~~~~e~dlfiaRaVL~yL 198 (336)
T 3lpz_A 119 KEMIDWSKKFGDYPAGDPELHHVVGTLYVEEGEFEAAEKHLVLGTKESPEVLARMEYEWYKQDESHTAPLYCARAVLPYL 198 (336)
T ss_dssp HHHHHHHHHHSSCTTCCHHHHHHHHHHHHHTTCHHHHHHHHTTSCTTHHHHHHHHHHHHHHTSCGGGHHHHHHHHHHHHH
T ss_pred HHHHHHHhhcCCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHhcCCchHHHHHHHHHHHHHhcCCccHHHHHHHHHHHHH
Confidence 455555554222334678999999999999999999988873210 012333444444443 456
Q ss_pred HcCCHHHHHHHHHHHH
Q 012143 212 QSGDMEQSAKCFQDLI 227 (470)
Q Consensus 212 ~~g~~~~A~~~~~~~l 227 (470)
..++...|...+....
T Consensus 199 ~l~n~~~A~~~~~~f~ 214 (336)
T 3lpz_A 199 LVANVRAANTAYRIFT 214 (336)
T ss_dssp HTTCHHHHHHHHHHHH
T ss_pred HhCCHHHHHHHHHHHH
Confidence 7888888888665544
|
| >4b4t_S RPN3, 26S proteasome regulatory subunit RPN3; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=93.64 E-value=1.3 Score=40.82 Aligned_cols=126 Identities=11% Similarity=0.080 Sum_probs=53.4
Q ss_pred HHHHcCChHHHHHHHHHHhh-----------cCCCChHHHHHHHHHHHHcCCHHHHHH----------HHHHHHh-----
Q 012143 175 ILLKSGRLQSSISVLSSLLA-----------VDPNNCDCIGNLGIAYFQSGDMEQSAK----------CFQDLIL----- 228 (470)
Q Consensus 175 ~~~~~~~~~~A~~~~~~a~~-----------~~~~~~~~~~~la~~~~~~g~~~~A~~----------~~~~~l~----- 228 (470)
.+...+++++|.++-...+. +++-...+|+..+.++...|+...... .+-.+++
T Consensus 145 ~L~d~k~~~~~~~~~~~~~~~~~l~~~nrrtlD~l~ak~~fY~s~~~e~~~~~~~~~~~~~~~~~ir~~Ll~~~rta~lr 224 (523)
T 4b4t_S 145 FLWDSKELEQLVEFNRKVVIPNLLCYYNLRSLNLINAKLWFYIYLSHETLARSSEEINSDNQNIILRSTMMKFLKIASLK 224 (523)
T ss_dssp ----------------------------------------------------------CHHHHHHHHTHHHHHHHHCCSC
T ss_pred HHhccccHHHHHHHHHHHHHHHHHHHHhHHhHHHHHHHHHHHHHHHHHHhcccccccccccchhhHHHHHHHHHHHHhcc
Confidence 34567888888887766551 134456678888888888887765322 2222222
Q ss_pred hCCCChH-HHHHHHHHHHhhhcccccccccchhhhhHHHhcCCHHHHHHHHHHHHhcCCC-------CHHHHHHHHHHHH
Q 012143 229 KDQNHPA-ALINYAALLLCKYGSVLAGAGANTGEGACLDQASAVNVAKECLLAALKADPK-------AAHIWANLANAYY 300 (470)
Q Consensus 229 ~~p~~~~-~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~p~-------~~~~~~~la~~~~ 300 (470)
.++.... .+..+- ..|...+.++.|..+..++. .|. ....++.+|.++.
T Consensus 225 ~D~~~qa~l~nllL---------------------RnYL~~~~y~qA~~lvsk~~--fP~~~~sn~q~~rY~YY~GRI~a 281 (523)
T 4b4t_S 225 HDNETKAMLINLIL---------------------RDFLNNGEVDSASDFISKLE--YPHTDVSSSLEARYFFYLSKINA 281 (523)
T ss_dssp SSSCHHHHHHHHHH---------------------HHHHHSSCSTTHHHHHHHHC--SCTTTSCHHHHHHHHHHHHHHHH
T ss_pred cCcchhHHHHHHHH---------------------HHHHccCcHHHHHHHHhcCc--CCcccCCHHHHHHHHHHHHHHHH
Confidence 1222111 122222 34457899999999999985 443 2456788899999
Q ss_pred HcCChhHHHHHHHHHHhcCCCcc
Q 012143 301 LTGDHRSSGKCLEKAAKLEPNCM 323 (470)
Q Consensus 301 ~~g~~~~A~~~~~~a~~~~p~~~ 323 (470)
.+++|.+|..++..|+...|.+.
T Consensus 282 ~q~~Y~eA~~~L~~A~rkap~~~ 304 (523)
T 4b4t_S 282 IQLDYSTANEYIIAAIRKAPHNS 304 (523)
T ss_dssp HTTCHHHHHHHHHHHTSSCSCSS
T ss_pred HhccHHHHHHHHHHHHHhCCcch
Confidence 99999999999999999988764
|
| >4b4t_R RPN7, 26S proteasome regulatory subunit RPN7; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=93.01 E-value=1.6 Score=39.76 Aligned_cols=25 Identities=20% Similarity=0.260 Sum_probs=15.1
Q ss_pred HHHHHHHHcCChHHHHHHHHHHhhc
Q 012143 171 TLGLILLKSGRLQSSISVLSSLLAV 195 (470)
Q Consensus 171 ~l~~~~~~~~~~~~A~~~~~~a~~~ 195 (470)
..|.++...++|.+|...|..++.-
T Consensus 213 ~~gl~~l~~r~f~~Aa~~f~e~~~t 237 (429)
T 4b4t_R 213 YYGIHCLAVRNFKEAAKLLVDSLAT 237 (429)
T ss_dssp HHHHGGGGTSCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHhChHHHHHHHHHHHhcc
Confidence 3455566666666666666665543
|
| >4b4t_S RPN3, 26S proteasome regulatory subunit RPN3; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=92.81 E-value=0.66 Score=42.73 Aligned_cols=67 Identities=18% Similarity=0.142 Sum_probs=55.4
Q ss_pred hHHHHHHHHHHHHcCChHHHHHHHHHHhhcCCCC-------hHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCh
Q 012143 166 AVVWNTLGLILLKSGRLQSSISVLSSLLAVDPNN-------CDCIGNLGIAYFQSGDMEQSAKCFQDLILKDQNHP 234 (470)
Q Consensus 166 ~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~-------~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~ 234 (470)
+..+..+-..|...+.+++|.....++. .|.. ...++.+|.++.-+++|.+|.+++..++...|.+.
T Consensus 231 a~l~nllLRnYL~~~~y~qA~~lvsk~~--fP~~~~sn~q~~rY~YY~GRI~a~q~~Y~eA~~~L~~A~rkap~~~ 304 (523)
T 4b4t_S 231 AMLINLILRDFLNNGEVDSASDFISKLE--YPHTDVSSSLEARYFFYLSKINAIQLDYSTANEYIIAAIRKAPHNS 304 (523)
T ss_dssp HHHHHHHHHHHHHSSCSTTHHHHHHHHC--SCTTTSCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHTSSCSCSS
T ss_pred HHHHHHHHHHHHccCcHHHHHHHHhcCc--CCcccCCHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCcch
Confidence 4566778889999999999999999985 4432 34577889999999999999999999999887654
|
| >4ady_A RPN2, 26S proteasome regulatory subunit RPN2; protein binding, PC repeat; 2.70A {Saccharomyces cerevisiae} PDB: 4b4t_N | Back alignment and structure |
|---|
Probab=89.81 E-value=18 Score=36.41 Aligned_cols=225 Identities=14% Similarity=0.140 Sum_probs=114.5
Q ss_pred hhhcChhhHHHHHHHHHHhC-CCC----hhHHHHHHHHHHHhCChhHHHHHHHHHHHHHhhhhcccchhhhHHHHHHhhh
Q 012143 52 SREEKVSSLKTGLVHVARKM-PKN----AHAHFLLGLMYQRLGQPLKAVSSYEKAEEILLRCEADIARPELLSLVQIHHA 126 (470)
Q Consensus 52 ~~~~~~~~A~~~~~~~l~~~-p~~----~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~ 126 (470)
...|+.+++...+.+.+... .++ ..+++.+|.++...+ .+++..+...+......... ........ .+..+
T Consensus 385 Ih~g~~~~gl~~L~~yL~~~~s~~~~ik~GAllaLGli~ag~~--~~~~~lL~~~L~~~~~~~~~-~~~~~ir~-gAaLG 460 (963)
T 4ady_A 385 IHKGNLLEGKKVMAPYLPGSRASSRFIKGGSLYGLGLIYAGFG--RDTTDYLKNIIVENSGTSGD-EDVDVLLH-GASLG 460 (963)
T ss_dssp HTSSCTTTHHHHHTTTSTTSCCSCHHHHHHHHHHHHHHTTTTT--HHHHHHHHHHHHHHSSCCSC-HHHHHHHH-HHHHH
T ss_pred hccCchHHHHHHHHHhccccCCCcHHHHHHHHHHHHHhcCCCc--HHHHHHHHHHHcCccccccc-cccHHHHH-HHHHH
Confidence 35567777777777655421 122 336677777776554 46888888777642100000 00111111 23346
Q ss_pred ccccccccCCCccccccCcccHHHHHHHHHHhhhcCccch--HHHHHHHHHHHHcCChHHHHHHHHHHhhcCCCChHHHH
Q 012143 127 QCLLPESSGDNSLDKELEPEELEEILSKLKESMQSDTRQA--VVWNTLGLILLKSGRLQSSISVLSSLLAVDPNNCDCIG 204 (470)
Q Consensus 127 ~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~p~~~--~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~ 204 (470)
+|.++...++ +++...+...+..+.... .+-+.+|.++...|+-+-....+..+.+-..+...-..
T Consensus 461 LGla~~GS~~------------eev~e~L~~~L~dd~~~~~~~AalALGli~vGTgn~~ai~~LL~~~~e~~~e~vrR~a 528 (963)
T 4ady_A 461 IGLAAMGSAN------------IEVYEALKEVLYNDSATSGEAAALGMGLCMLGTGKPEAIHDMFTYSQETQHGNITRGL 528 (963)
T ss_dssp HHHHSTTCCC------------HHHHHHHHHHHHTCCHHHHHHHHHHHHHHHTTCCCHHHHHHHHHHHHHCSCHHHHHHH
T ss_pred HHHHhcCCCC------------HHHHHHHHHHHhcCCHHHHHHHHHHHhhhhcccCCHHHHHHHHHHHhccCcHHHHHHH
Confidence 6666554444 577777777776443221 34556788888888866655555555543332222233
Q ss_pred HHHHHHHHcCCHHHHHHHHHHHHhhCCCChHHHHHHHHHHHhhhcccccccccchhhhhHHHhcCCHHHHHHHHHHHHhc
Q 012143 205 NLGIAYFQSGDMEQSAKCFQDLILKDQNHPAALINYAALLLCKYGSVLAGAGANTGEGACLDQASAVNVAKECLLAALKA 284 (470)
Q Consensus 205 ~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~ 284 (470)
.+|..+...|+.+.+-...+..... .++.. ..+.++. +|..|...|+...-...+..+..-
T Consensus 529 algLGll~~g~~e~~~~li~~L~~~--~dp~v--Rygaa~a---------------lglAyaGTGn~~aIq~LL~~~~~d 589 (963)
T 4ady_A 529 AVGLALINYGRQELADDLITKMLAS--DESLL--RYGGAFT---------------IALAYAGTGNNSAVKRLLHVAVSD 589 (963)
T ss_dssp HHHHHHHTTTCGGGGHHHHHHHHHC--SCHHH--HHHHHHH---------------HHHHTTTSCCHHHHHHHHHHHHHC
T ss_pred HHHHHhhhCCChHHHHHHHHHHHhC--CCHHH--HHHHHHH---------------HHHHhcCCCCHHHHHHHHHHhccC
Confidence 4444455677777666665554432 23333 2333322 244555778764444466665543
Q ss_pred CCCCHHHHHHHHHHHHHcCChhHHHHH
Q 012143 285 DPKAAHIWANLANAYYLTGDHRSSGKC 311 (470)
Q Consensus 285 ~p~~~~~~~~la~~~~~~g~~~~A~~~ 311 (470)
..++..-.--+|......|+.+.+...
T Consensus 590 ~~d~VRraAViaLGlI~~g~~e~v~rl 616 (963)
T 4ady_A 590 SNDDVRRAAVIALGFVLLRDYTTVPRI 616 (963)
T ss_dssp SCHHHHHHHHHHHHHHTSSSCSSHHHH
T ss_pred CcHHHHHHHHHHHHhhccCCHHHHHHH
Confidence 222333223333333444554433333
|
| >2wpv_A GET4, UPF0363 protein YOR164C; golgi-ER trafficking, tail-anchored protein, protein binding GET4; 1.99A {Saccharomyces cerevisiae} PDB: 3lku_A | Back alignment and structure |
|---|
Probab=88.81 E-value=11 Score=32.42 Aligned_cols=88 Identities=8% Similarity=-0.067 Sum_probs=52.2
Q ss_pred CCCcHHHHHHHHHHHhccccHHHHHHHHHHHhcchhhhhHhhHHHHHHHhccHHHHHHHHHHHHhcCCCcHHHHHHHHH-
Q 012143 365 QIEPPIAWAGFAAVQKTHHEVAAAFETEENELSKMEECAGAGESAFLDQASAVNVAKECLLAALKADPKAAHIWANLAN- 443 (470)
Q Consensus 365 ~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~- 443 (470)
...+|..+..+|..+...+++.+|...+-..-+. +...+..+ + .+++++.-.-.|...+.+...+.
T Consensus 130 ~~Gdp~LH~~~a~~~~~e~~~~~A~~H~i~~~~~-s~~~~a~~---l---------~~w~~~~~~~~~~e~dlf~~RaVL 196 (312)
T 2wpv_A 130 KFGDPYLHNTIGSKLLEGDFVYEAERYFMLGTHD-SMIKYVDL---L---------WDWLCQVDDIEDSTVAEFFSRLVF 196 (312)
T ss_dssp TTCCHHHHHHHHHHHHHTTCHHHHHHHHHTSCHH-HHHHHHHH---H---------HHHHHHTTCCCHHHHHHHHHHHHH
T ss_pred CCCCHHHHHHHHHHHhhcCCHHHHHHHHHhCCCc-cHHHHHHH---H---------HHHHHhcCCCCcchHHHHHHHHHH
Confidence 4467889999999999999998888766421110 11111100 0 01111100023444566666655
Q ss_pred HHHHcCChHHHHHHHHHHHHhh
Q 012143 444 AYYLTGDHRSSGKCLEKVLMVY 465 (470)
Q Consensus 444 ~~~~~g~~~~A~~~~~~al~~~ 465 (470)
.|...|+...|...|....+.+
T Consensus 197 ~yL~l~n~~~A~~~~~~f~~~~ 218 (312)
T 2wpv_A 197 NYLFISNISFAHESKDIFLERF 218 (312)
T ss_dssp HHHHTTBHHHHHHHHHHHHHHH
T ss_pred HHHHhcCHHHHHHHHHHHHHHH
Confidence 4578999999999998877665
|
| >1wy6_A Hypothetical protein ST1625; helical repeat protein, structural genomics, unknown function; 2.20A {Sulfolobus tokodaii} SCOP: a.118.20.1 | Back alignment and structure |
|---|
Probab=88.71 E-value=4.5 Score=29.54 Aligned_cols=63 Identities=11% Similarity=0.018 Sum_probs=52.4
Q ss_pred hhhhcccchhhhhcChhhHHHHHHHHHHhCCCChhHHHHHHHHHHHhCChhHHHHHHHHHHHH
Q 012143 42 DQSGLGTSSSSREEKVSSLKTGLVHVARKMPKNAHAHFLLGLMYQRLGQPLKAVSSYEKAEEI 104 (470)
Q Consensus 42 ~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~ 104 (470)
.+..++...+..+|+-++..+.+..++...|-+|+.+..+|..|.+.|+..+|-+.+.+|-+.
T Consensus 92 e~vd~ALd~lv~~~KkDqLdki~~~~l~n~~~~~~~l~kia~Ay~Klg~~r~a~eLl~~AC~k 154 (172)
T 1wy6_A 92 EHVNKALDILVIQGKRDKLEEIGREILKNNEVSASILVAIANALRRVGDERDATTLLIEACKK 154 (172)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHC--CCSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHhccHhHHHHHHHHHhccCCCChHHHHHHHHHHHHhcchhhHHHHHHHHHHh
Confidence 345555554678889999999999887878888999999999999999999999999999874
|
| >3lvg_A Clathrin heavy chain 1; SELF assembly, coated PIT, cytoplasmic vesicle, membrane, Ca structural protein; 7.94A {Bos taurus} PDB: 3lvh_A | Back alignment and structure |
|---|
Probab=84.91 E-value=0.0071 Score=54.58 Aligned_cols=251 Identities=11% Similarity=0.069 Sum_probs=151.3
Q ss_pred hhhhhhhhhhHHHHHHHHHHHHhcCCCCcchhhhcccchhhhhcChhhHHHHHHHHHHhCCCChhHHHHHHHHHHHhCCh
Q 012143 12 GKKINKLGKCRSRISSKMDSALEFGVDADGDQSGLGTSSSSREEKVSSLKTGLVHVARKMPKNAHAHFLLGLMYQRLGQP 91 (470)
Q Consensus 12 ~~~~~~~g~~~~a~~~~~~~~l~~~p~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~l~~~~~~~g~~ 91 (470)
|+..-..|+..+|| +.|-++ +++..+...-.. ..+.|.+++.+..+.-+-+. -..+.+=..|..+|.+.|+.
T Consensus 61 gkAqL~~~~v~eAI-dsyIkA-----~Dps~y~eVi~~-A~~~~~~edLv~yL~MaRk~-~ke~~IDteLi~ayAk~~rL 132 (624)
T 3lvg_A 61 AKAQLQKGMVKEAI-DSYIKA-----DDPSSYMEVVQA-ANTSGNWEELVKYLQMARKK-ARESYVETELIFALAKTNRL 132 (624)
T ss_dssp HHHTTTSSSCTTTT-TSSCCC-----SCCCSSSHHHHH-TTTSSCCTTHHHHHHTTSTT-CCSTTTTHHHHHHHHTSCSS
T ss_pred HHHHHccCchHHHH-HHHHhC-----CChHHHHHHHHH-HHhCCCHHHHHHHHHHHHHH-hcccccHHHHHHHHHhhCcH
Confidence 44444455666666 544433 455555555555 67789999999888765433 45556666777888888776
Q ss_pred hHHHHHHHHHHHHHhhhhcccchh------hhHHHHHHhhhccccccccCCCccccccCcccHHHHHHHHHHhhhcCccc
Q 012143 92 LKAVSSYEKAEEILLRCEADIARP------ELLSLVQIHHAQCLLPESSGDNSLDKELEPEELEEILSKLKESMQSDTRQ 165 (470)
Q Consensus 92 ~~A~~~~~~al~~~~~~~~~~~~~------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~p~~ 165 (470)
.+-.+++.. |+.......+ .....+.+.+....=+..+..+ +...|+|..|++..+++ ++
T Consensus 133 ~elEefl~~-----~N~A~iq~VGDrcf~e~lYeAAKilys~isN~akLAst----LV~L~~yq~AVdaArKA-----ns 198 (624)
T 3lvg_A 133 AELEEFING-----PNNAHIQQVGDRCYDEKMYDAAKLLYNNVSNFGRLAST----LVHLGEYQAAVDGARKA-----NS 198 (624)
T ss_dssp STTTSTTSC-----CSSSCTHHHHHHHHHSCCSTTSSTTGGGSCCCTTTSSS----SSSCSGGGSSTTTTTTC-----CS
T ss_pred HHHHHHHcC-----CCcccHHHHHHHHHHccCHHHHHHHHHhCccHHHHHHH----HHHHHHHHHHHHHHHhc-----CC
Confidence 653333211 1110000000 0000011111111111222222 56777778888877665 56
Q ss_pred hHHHHHHHHHHHHcCChHHHHHHHHHHhhcCCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCChHHHHHHHHHHH
Q 012143 166 AVVWNTLGLILLKSGRLQSSISVLSSLLAVDPNNCDCIGNLGIAYFQSGDMEQSAKCFQDLILKDQNHPAALINYAALLL 245 (470)
Q Consensus 166 ~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~l~~~~~ 245 (470)
+.+|.....++...+++.-|..+--..+- .|+.. -.+...|...|.+++-+..++.++.+..-+......||.+|.
T Consensus 199 ~ktWKeV~~ACvd~~EfrLAqicGLniIv-hadeL---~elv~~YE~~G~f~ELIsLlEaglglErAHmGmFTELaILYs 274 (624)
T 3lvg_A 199 TRTWKEVCFACVDGKEFRLAQMCGLHIVV-HADEL---EELINYYQDRGYFEELITMLEAALGLERAHMGMFTELAILYS 274 (624)
T ss_dssp SCSHHHHTHHHHHSCTTTTTTHHHHHHHC-CSSCC---SGGGSSSSTTCCCTTSTTTHHHHTTSTTCCHHHHHHHHHHHH
T ss_pred hhHHHHHHHHHhCchHHHHHHHhcchhcc-cHHHH---HHHHHHHHhCCCHHHHHHHHHHHhCCCchhHHHHHHHHHHHH
Confidence 77888999999999999999888777654 33322 234456888999999999999999998889999999998886
Q ss_pred hhhcccccccccchhhhhHHHhcCCHHHHHHHHHHHHh-c-CCC------CHHHHHHHHHHHHHcCChhHHHH
Q 012143 246 CKYGSVLAGAGANTGEGACLDQASAVNVAKECLLAALK-A-DPK------AAHIWANLANAYYLTGDHRSSGK 310 (470)
Q Consensus 246 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~-~-~p~------~~~~~~~la~~~~~~g~~~~A~~ 310 (470)
. =++++-.++++--.. + -|. ....|..+..+|..-.+|+.|..
T Consensus 275 K----------------------Y~PeKlmEHlklf~sriNipKviracE~ahLW~ElvfLY~~ydE~DnA~l 325 (624)
T 3lvg_A 275 K----------------------FKPQKMREHLELFWSRVNIPKVLRAAEQAHLWAELVFLYDKYEEYDNAII 325 (624)
T ss_dssp S----------------------SCTTHHHHHHTTSSSSSCCTTTHHHHTTTTCHHHHHHHHHHHTCHHHHHH
T ss_pred h----------------------cCHHHHHHHHHHHHHhccHHHHHHHHHHHhhHHHHHHHHhcchhHHHHHH
Confidence 2 234444444432111 0 011 34567777777887778876653
|
| >4ady_A RPN2, 26S proteasome regulatory subunit RPN2; protein binding, PC repeat; 2.70A {Saccharomyces cerevisiae} PDB: 4b4t_N | Back alignment and structure |
|---|
Probab=84.70 E-value=30 Score=34.85 Aligned_cols=183 Identities=14% Similarity=0.074 Sum_probs=95.3
Q ss_pred hhhhHHHHHHHHHHHHhcC-CCC----cchhhhcccchhhhhcChhhHHHHHHHHHHhCC---C---Ch----hHHHHHH
Q 012143 18 LGKCRSRISSKMDSALEFG-VDA----DGDQSGLGTSSSSREEKVSSLKTGLVHVARKMP---K---NA----HAHFLLG 82 (470)
Q Consensus 18 ~g~~~~a~~~~~~~~l~~~-p~~----~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~p---~---~~----~~~~~l~ 82 (470)
.|+.++.+ ..+.+.+... .++ ..+.+.+|.+ .. |...++...+...+..+. . +. .+-..||
T Consensus 387 ~g~~~~gl-~~L~~yL~~~~s~~~~ik~GAllaLGli-~a--g~~~~~~~lL~~~L~~~~~~~~~~~~~~ir~gAaLGLG 462 (963)
T 4ady_A 387 KGNLLEGK-KVMAPYLPGSRASSRFIKGGSLYGLGLI-YA--GFGRDTTDYLKNIIVENSGTSGDEDVDVLLHGASLGIG 462 (963)
T ss_dssp SSCTTTHH-HHHTTTSTTSCCSCHHHHHHHHHHHHHH-TT--TTTHHHHHHHHHHHHHHSSCCSCHHHHHHHHHHHHHHH
T ss_pred cCchHHHH-HHHHHhccccCCCcHHHHHHHHHHHHHh-cC--CCcHHHHHHHHHHHcCccccccccccHHHHHHHHHHHH
Confidence 34445555 5565555421 111 1234455555 33 333467787877775432 0 11 3555777
Q ss_pred HHHHHhCChhHHHHHHHHHHHHHhhhhcccchhhhHHHHHHhhhccccccccCCCccccccCcccHHHHHHHHHHhhhcC
Q 012143 83 LMYQRLGQPLKAVSSYEKAEEILLRCEADIARPELLSLVQIHHAQCLLPESSGDNSLDKELEPEELEEILSKLKESMQSD 162 (470)
Q Consensus 83 ~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~ 162 (470)
.++.-.++ +++.+.+...+..+. . .. ...+-..+|.++..-|+ -+-...++..+....
T Consensus 463 la~~GS~~-eev~e~L~~~L~dd~--------~-~~-~~~AalALGli~vGTgn-----------~~ai~~LL~~~~e~~ 520 (963)
T 4ady_A 463 LAAMGSAN-IEVYEALKEVLYNDS--------A-TS-GEAAALGMGLCMLGTGK-----------PEAIHDMFTYSQETQ 520 (963)
T ss_dssp HHSTTCCC-HHHHHHHHHHHHTCC--------H-HH-HHHHHHHHHHHHTTCCC-----------HHHHHHHHHHHHHCS
T ss_pred HHhcCCCC-HHHHHHHHHHHhcCC--------H-HH-HHHHHHHHhhhhcccCC-----------HHHHHHHHHHHhccC
Confidence 77765554 466777777765311 0 11 11233445555444443 233344444444433
Q ss_pred ccchHHHHHHHHHHHHcCChHHHHHHHHHHhhcCCCChH----HHHHHHHHHHHcCCHHHHHHHHHHHHh
Q 012143 163 TRQAVVWNTLGLILLKSGRLQSSISVLSSLLAVDPNNCD----CIGNLGIAYFQSGDMEQSAKCFQDLIL 228 (470)
Q Consensus 163 p~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~----~~~~la~~~~~~g~~~~A~~~~~~~l~ 228 (470)
.+...-...+|..+...|+.+.+....+..... + ++. +-..+|..|...|+...-...+..+..
T Consensus 521 ~e~vrR~aalgLGll~~g~~e~~~~li~~L~~~-~-dp~vRygaa~alglAyaGTGn~~aIq~LL~~~~~ 588 (963)
T 4ady_A 521 HGNITRGLAVGLALINYGRQELADDLITKMLAS-D-ESLLRYGGAFTIALAYAGTGNNSAVKRLLHVAVS 588 (963)
T ss_dssp CHHHHHHHHHHHHHHTTTCGGGGHHHHHHHHHC-S-CHHHHHHHHHHHHHHTTTSCCHHHHHHHHHHHHH
T ss_pred cHHHHHHHHHHHHhhhCCChHHHHHHHHHHHhC-C-CHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHhcc
Confidence 333333344555566778887777776665543 2 233 334567778899996554446666654
|
| >4gq2_M Nucleoporin NUP120; beta propeller alpha helical, component of nuclear pore COMP transport protein; 2.40A {Schizosaccharomyces pombe} PDB: 4fhm_B | Back alignment and structure |
|---|
Probab=82.98 E-value=22 Score=36.24 Aligned_cols=53 Identities=13% Similarity=0.188 Sum_probs=43.2
Q ss_pred HHHHHHHHcCChHHHHHHHHHHhhcCCCChHHHHHHHHHHHHcCCHHHHHHHHHHHH
Q 012143 171 TLGLILLKSGRLQSSISVLSSLLAVDPNNCDCIGNLGIAYFQSGDMEQSAKCFQDLI 227 (470)
Q Consensus 171 ~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~l 227 (470)
.+...+...|.++-|. ..+..-|.++..-+.+|.++...|++++|..+|+++-
T Consensus 815 ~l~~~L~~~~~~~~a~----eL~~~~~~t~~~~yv~gr~~L~~ge~~~A~~~F~kAA 867 (950)
T 4gq2_M 815 ELVEKLFLFKQYNACM----QLIGWLNSDPIAVYLKALIYLKSKEAVKAVRCFKTTS 867 (950)
T ss_dssp HHHHHHHHTTCHHHHH----HHGGGCCSSHHHHHHHHHHHHHTTCHHHHHHHHHTCC
T ss_pred HHHHHHHHhcHHHHHH----HHHhhcCCChHHHHHHHHHHHHcCCHHHHHHHHHHHh
Confidence 3566677788877554 3556677888888999999999999999999999875
|
Homologous Structure Domains
Structure Domains Detected by RPS-BLAST
Original result of RPS-BLAST against SCOP70(version1.75) database
| ID | Alignment Graph | Length |
Definition |
E-value |
| 470 | ||||
| d1w3ba_ | 388 | a.118.8.1 (A:) O-GlcNAc transferase p110 subunit, | 1e-15 | |
| d1w3ba_ | 388 | a.118.8.1 (A:) O-GlcNAc transferase p110 subunit, | 1e-13 | |
| d1w3ba_ | 388 | a.118.8.1 (A:) O-GlcNAc transferase p110 subunit, | 2e-13 | |
| d1w3ba_ | 388 | a.118.8.1 (A:) O-GlcNAc transferase p110 subunit, | 5e-13 | |
| d1w3ba_ | 388 | a.118.8.1 (A:) O-GlcNAc transferase p110 subunit, | 1e-08 | |
| d1ya0a1 | 497 | a.118.8.1 (A:1-497) SMG-7 {Human (Homo sapiens) [T | 5e-11 | |
| d1ya0a1 | 497 | a.118.8.1 (A:1-497) SMG-7 {Human (Homo sapiens) [T | 8e-08 | |
| d1ya0a1 | 497 | a.118.8.1 (A:1-497) SMG-7 {Human (Homo sapiens) [T | 1e-06 | |
| d1ya0a1 | 497 | a.118.8.1 (A:1-497) SMG-7 {Human (Homo sapiens) [T | 3e-06 | |
| d1ya0a1 | 497 | a.118.8.1 (A:1-497) SMG-7 {Human (Homo sapiens) [T | 0.001 | |
| d1zbpa1 | 264 | e.61.1.1 (A:2-265) Hypothetical protein VPA1032 {V | 6e-11 | |
| d1zbpa1 | 264 | e.61.1.1 (A:2-265) Hypothetical protein VPA1032 {V | 0.002 | |
| d1dcea1 | 334 | a.118.6.1 (A:1-241,A:351-443) Rab geranylgeranyltr | 5e-09 | |
| d1dcea1 | 334 | a.118.6.1 (A:1-241,A:351-443) Rab geranylgeranyltr | 3e-05 | |
| d1fcha_ | 323 | a.118.8.1 (A:) Peroxin pex5 (peroxisomal targeting | 3e-08 | |
| d1fcha_ | 323 | a.118.8.1 (A:) Peroxin pex5 (peroxisomal targeting | 3e-05 | |
| d1fcha_ | 323 | a.118.8.1 (A:) Peroxin pex5 (peroxisomal targeting | 5e-05 | |
| d1fcha_ | 323 | a.118.8.1 (A:) Peroxin pex5 (peroxisomal targeting | 0.002 | |
| d1xnfa_ | 259 | a.118.8.1 (A:) Lipoprotein NlpI {Escherichia coli | 7e-07 | |
| d1xnfa_ | 259 | a.118.8.1 (A:) Lipoprotein NlpI {Escherichia coli | 0.003 | |
| d1hh8a_ | 192 | a.118.8.1 (A:) Neutrophil cytosolic factor 2 (NCF- | 5e-06 | |
| d1hz4a_ | 366 | a.118.8.2 (A:) Transcription factor MalT domain II | 5e-06 | |
| d2h6fa1 | 315 | a.118.6.1 (A:55-369) Protein farnesyltransferase a | 9e-06 | |
| d2pqrb1 | 124 | a.118.8.1 (B:5-128) Mitochondria fission protein F | 5e-05 | |
| d1qqea_ | 290 | a.118.8.1 (A:) Vesicular transport protein sec17 { | 0.001 | |
| d1elra_ | 128 | a.118.8.1 (A:) Hop {Human (Homo sapiens) [TaxId: 9 | 0.002 | |
| d1kt1a1 | 168 | a.118.8.1 (A:254-421) FKBP51, C-terminal domain {M | 0.003 |
| >d1w3ba_ a.118.8.1 (A:) O-GlcNAc transferase p110 subunit, OGT {Human (Homo sapiens) [TaxId: 9606]} Length = 388 | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: O-GlcNAc transferase p110 subunit, OGT species: Human (Homo sapiens) [TaxId: 9606]
Score = 76.2 bits (186), Expect = 1e-15
Identities = 40/268 (14%), Positives = 86/268 (32%), Gaps = 46/268 (17%)
Query: 71 MPKNAHAHFLLGLMYQRLGQPLKAVSSYEKAEEILLRCEADIARPELLSLVQIHHAQCLL 130
P A A LG ++ G+ A+ +EKA + + + ++L +
Sbjct: 165 QPNFAVAWSNLGCVFNAQGEIWLAIHHFEKAVTL----DPNFLDA-YINLGNVLKEA--- 216
Query: 131 PESSGDNSLDKELEPEELEEILSKLKESMQSDTRQAVVWNTLGLILLKSGRLQSSISVLS 190
+ ++ ++ AVV L + + G + +I
Sbjct: 217 ---------------RIFDRAVAAYLRALSLSPNHAVVHGNLACVYYEQGLIDLAIDTYR 261
Query: 191 SLLAVDPNNCDCIGNLGIAYFQSGDMEQSAKCFQDLILKDQNHPAALINYAALLLCKYGS 250
+ + P+ D NL A + G + ++ C+ + H +L N A +
Sbjct: 262 RAIELQPHFPDAYCNLANALKEKGSVAEAEDCYNTALRLCPTHADSLNNLANIKR----- 316
Query: 251 VLAGAGANTGEGACLDQASAVNVAKECLLAALKADPKAAHIWANLANAYYLTGDHRSSGK 310
+ + A AL+ P+ A +NLA+ G + +
Sbjct: 317 ----------------EQGNIEEAVRLYRKALEVFPEFAAAHSNLASVLQQQGKLQEALM 360
Query: 311 CLEKAAKLEPNCMSTRY--AVAVSRIKD 336
++A ++ P + ++D
Sbjct: 361 HYKEAIRISPTFADAYSNMGNTLKEMQD 388
|
| >d1w3ba_ a.118.8.1 (A:) O-GlcNAc transferase p110 subunit, OGT {Human (Homo sapiens) [TaxId: 9606]} Length = 388 | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: O-GlcNAc transferase p110 subunit, OGT species: Human (Homo sapiens) [TaxId: 9606]
Score = 70.1 bits (170), Expect = 1e-13
Identities = 45/299 (15%), Positives = 84/299 (28%), Gaps = 5/299 (1%)
Query: 172 LGLILLKSGRLQSSISVLSSLLAVDPNNCDCIGNLGIAYFQSGDMEQSAKCFQDLILKDQ 231
L ++G +++ L +P+N + L +FQ +++SA I ++
Sbjct: 5 LAHREYQAGDFEAAERHCMQLWRQEPDNTGVLLLLSSIHFQCRRLDRSAHFSTLAIKQNP 64
Query: 232 NHPAALINYAALLLCKYGSVLAGAGANTGEGACLDQASAVNVAKECLLAALKADPKAAHI 291
A N + + A D L+AA +
Sbjct: 65 LLAEAYSNLGNVYKERGQLQEAIEHYRHALRLKPDFIDGYINLAAALVAAGDMEGAVQAY 124
Query: 292 WANLANAYYLTGDHRSSGKCLEKAAKLEPNCMSTRYAVAVSRIKDAERSQEPTEQLSWAG 351
+ L L G KA + ++ A + G
Sbjct: 125 VSALQYNPDLYCVRSDLGNL-LKALGRLEEAKACYLKAIETQPNFAVAWSNLGCVFNAQG 183
Query: 352 NEMASILREGDPVQIEPPIAWA----GFAAVQKTHHEVAAAFETEENELSKMEECAGAGE 407
+I V ++P A G + + A A LS
Sbjct: 184 EIWLAIHHFEKAVTLDPNFLDAYINLGNVLKEARIFDRAVAAYLRALSLSPNHAVVHGNL 243
Query: 408 SAFLDQASAVNVAKECLLAALKADPKAAHIWANLANAYYLTGDHRSSGKCLEKVLMVYC 466
+ + +++A + A++ P + NLANA G + C L +
Sbjct: 244 ACVYYEQGLIDLAIDTYRRAIELQPHFPDAYCNLANALKEKGSVAEAEDCYNTALRLCP 302
|
| >d1w3ba_ a.118.8.1 (A:) O-GlcNAc transferase p110 subunit, OGT {Human (Homo sapiens) [TaxId: 9606]} Length = 388 | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: O-GlcNAc transferase p110 subunit, OGT species: Human (Homo sapiens) [TaxId: 9606]
Score = 69.7 bits (169), Expect = 2e-13
Identities = 56/353 (15%), Positives = 111/353 (31%), Gaps = 37/353 (10%)
Query: 147 ELEEILSKLKESMQSDTRQAVVWNTLGLILLKSGRLQSSISVLSSLLAVDPNNCDCIGNL 206
+ E + + + V L I + RL S + + +P + NL
Sbjct: 14 DFEAAERHCMQLWRQEPDNTGVLLLLSSIHFQCRRLDRSAHFSTLAIKQNPLLAEAYSNL 73
Query: 207 GIAYFQSGDMEQSAKCFQDLILKDQNHPAALINYAALLLCKYG-------------SVLA 253
G Y + G ++++ + ++ + + IN AA L+
Sbjct: 74 GNVYKERGQLQEAIEHYRHALRLKPDFIDGYINLAAALVAAGDMEGAVQAYVSALQYNPD 133
Query: 254 GAGANTGEGACLDQASAVNVAKECLLAALKADPKAAHIWANLANAYYLTGDHRSSGKCLE 313
+ G L + AK C L A++ P A W+NL + G+ + E
Sbjct: 134 LYCVRSDLGNLLKALGRLEEAKACYLKAIETQPNFAVAWSNLGCVFNAQGEIWLAIHHFE 193
Query: 314 KAAKLEPNCMSTRYAVAVSR---------IKDAERSQEPTEQLSWAGNEMASILRE-GDP 363
KA L+PN + + + R+ + + +A + E G
Sbjct: 194 KAVTLDPNFLDAYINLGNVLKEARIFDRAVAAYLRALSLSPNHAVVHGNLACVYYEQGLI 253
Query: 364 ----------VQIEPPIAWA----GFAAVQKTHHEVAAAFETEENELSKMEECAGAGESA 409
++++P A A +K A L + +
Sbjct: 254 DLAIDTYRRAIELQPHFPDAYCNLANALKEKGSVAEAEDCYNTALRLCPTHADSLNNLAN 313
Query: 410 FLDQASAVNVAKECLLAALKADPKAAHIWANLANAYYLTGDHRSSGKCLEKVL 462
+ + A AL+ P+ A +NLA+ G + + ++ +
Sbjct: 314 IKREQGNIEEAVRLYRKALEVFPEFAAAHSNLASVLQQQGKLQEALMHYKEAI 366
|
| >d1w3ba_ a.118.8.1 (A:) O-GlcNAc transferase p110 subunit, OGT {Human (Homo sapiens) [TaxId: 9606]} Length = 388 | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: O-GlcNAc transferase p110 subunit, OGT species: Human (Homo sapiens) [TaxId: 9606]
Score = 68.2 bits (165), Expect = 5e-13
Identities = 62/406 (15%), Positives = 125/406 (30%), Gaps = 68/406 (16%)
Query: 69 RKMPKNAHAHFLLGLMYQRLGQPLKAVSSYEKAEEI-----------LLRCEADIARPEL 117
R+ P N LL ++ + + ++ A + + E
Sbjct: 27 RQEPDNTGVLLLLSSIHFQCRRLDRSAHFSTLAIKQNPLLAEAYSNLGNVYKERGQLQEA 86
Query: 118 LSLVQIHHAQCLLPESSGDNSLDKELEPEELEEILSKLKESMQSDTRQAVVWNTLGLILL 177
+ + N + ++E + ++Q + V + LG +L
Sbjct: 87 IEHYRHALRLKPDFIDGYINLAAALVAAGDMEGAVQAYVSALQYNPDLYCVRSDLGNLLK 146
Query: 178 KSGRLQSSISVLSSLLAVDPNNCDCIGNLGIAYFQSGDMEQSAKCFQDLILKDQNHPAAL 237
GRL+ + + + PN NLG + G++ + F+ + D N A
Sbjct: 147 ALGRLEEAKACYLKAIETQPNFAVAWSNLGCVFNAQGEIWLAIHHFEKAVTLDPNFLDAY 206
Query: 238 INYAALLLC--KYGSVLA-----------GAGANTGEGACLDQASAVNVAKECLLAALKA 284
IN +L + +A A + + +++A + A++
Sbjct: 207 INLGNVLKEARIFDRAVAAYLRALSLSPNHAVVHGNLACVYYEQGLIDLAIDTYRRAIEL 266
Query: 285 DPKAAHIWANLANAYYLTGDHRSSGKCLEKAAKLEPNCMSTRYAVAVSRIKDAERSQEPT 344
P + NLANA G + C A +L P + +A + + +E
Sbjct: 267 QPHFPDAYCNLANALKEKGSVAEAEDCYNTALRLCPTHADSLNNLANIKRE-QGNIEEAV 325
Query: 345 EQLSWAGNEMASILREGDPVQIEPPIAWAGFAAVQKTHHEVAAAFETEENELSKMEECAG 404
A +++ P A A H +A+ + + K++E
Sbjct: 326 RLYRKA-------------LEVFPEFAAA--------HSNLASVLQ----QQGKLQE--- 357
Query: 405 AGESAFLDQASAVNVAKECLLAALKADPKAAHIWANLANAYYLTGD 450
A A++ P A ++N+ N D
Sbjct: 358 ---------------ALMHYKEAIRISPTFADAYSNMGNTLKEMQD 388
|
| >d1w3ba_ a.118.8.1 (A:) O-GlcNAc transferase p110 subunit, OGT {Human (Homo sapiens) [TaxId: 9606]} Length = 388 | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: O-GlcNAc transferase p110 subunit, OGT species: Human (Homo sapiens) [TaxId: 9606]
Score = 54.7 bits (130), Expect = 1e-08
Identities = 35/257 (13%), Positives = 71/257 (27%), Gaps = 33/257 (12%)
Query: 205 NLGIAYFQSGDMEQSAKCFQDLILKDQNHPAALINYAALLLCKYGSVLAGAGANTGEGAC 264
L +Q+GD E + + L ++ ++ L+ +
Sbjct: 4 ELAHREYQAGDFEAAERHCMQLWRQEPDNTGVLLLL---------------------SSI 42
Query: 265 LDQASAVNVAKECLLAALKADPKAAHIWANLANAYYLTGDHRSSGKCLEKAAKLEPNCMS 324
Q ++ + A+K +P A ++NL N Y G + + + A +L+P+ +
Sbjct: 43 HFQCRRLDRSAHFSTLAIKQNPLLAEAYSNLGNVYKERGQLQEAIEHYRHALRLKPDFID 102
Query: 325 TRYAVAVSRIKDAERSQEPTEQLSWAGNEMASILREGDPVQIEPP-IAWAGFAAVQKTHH 383
+A + + + +S D + A
Sbjct: 103 GYINLAAALVAAGDMEGAVQAYVSALQYNPDLYCVRSDLGNLLKALGRLEEAKACYLKAI 162
Query: 384 EVAAAFETEENELSKMEECAGAGESAFLDQASAVNVAKECLLAALKADPKAAHIWANLAN 443
E F + L + G A A+ DP + NL N
Sbjct: 163 ETQPNFAVAWSNLGCVFNAQGEIWLAI-----------HHFEKAVTLDPNFLDAYINLGN 211
Query: 444 AYYLTGDHRSSGKCLEK 460
+ +
Sbjct: 212 VLKEARIFDRAVAAYLR 228
|
| >d1ya0a1 a.118.8.1 (A:1-497) SMG-7 {Human (Homo sapiens) [TaxId: 9606]} Length = 497 | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: SMG-7 species: Human (Homo sapiens) [TaxId: 9606]
Score = 62.1 bits (150), Expect = 5e-11
Identities = 28/256 (10%), Positives = 59/256 (23%), Gaps = 48/256 (18%)
Query: 72 PKNAHAHFLLGLMYQRLGQPLKAVSSYEKAEEILLRCEADIARPELLSLVQIHHAQCLLP 131
+ ++ Y+K ++ E + + L
Sbjct: 17 ADMTDSKLGPAEVWTSRQALQDL---YQKM--LVTDLEYALDKKVEQDLWNHAF------ 65
Query: 132 ESSGDNSLDKELEPEELEEILSKLKESMQSDTRQAVVWNTLGLILLKSGRLQSSISVLSS 191
+ L ++ + R V N + SG + L +
Sbjct: 66 --------------KNQITTLQGQAKNRANPNRSEVQANLSLFLEAASGFYTQLLQELCT 111
Query: 192 LLAVDPNNCDCIGNLGIAYFQSGDMEQSAKCFQDLILKDQNHPAALINYAALLLCKYGSV 251
+ VD LGI + K H L++
Sbjct: 112 VFNVDLPCRVKSSQLGIISNKQTHTSAIVKPQSSSCSYICQH--CLVH------------ 157
Query: 252 LAGAGANTGEGACLDQASAVNVAKECLLAALKADPKAAHIWANLANAYYLTGDHRSSGKC 311
G + + A+ A + P + LA GDH ++
Sbjct: 158 ---------LGDIARYRNQTSQAESYYRHAAQLVPSNGQPYNQLAILASSKGDHLTTIFY 208
Query: 312 LEKAAKLEPNCMSTRY 327
++ ++ +
Sbjct: 209 YCRSIAVKFPFPAAST 224
|
| >d1ya0a1 a.118.8.1 (A:1-497) SMG-7 {Human (Homo sapiens) [TaxId: 9606]} Length = 497 | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: SMG-7 species: Human (Homo sapiens) [TaxId: 9606]
Score = 52.1 bits (124), Expect = 8e-08
Identities = 28/170 (16%), Positives = 41/170 (24%), Gaps = 3/170 (1%)
Query: 76 HAHFLLGLMYQRLGQPLKAVSSYEKAEEILLRCEADIARPE-LLSLVQIHHAQCLLPESS 134
HA Q + + E + L EA LL + L
Sbjct: 63 HAFKNQITTLQGQAKNRANPNRSEVQANLSLFLEAASGFYTQLLQELCTVFNVDLPCRVK 122
Query: 135 GDNSLDKELEPEELEEILSKLKESMQSDTRQAVVWNTLGLILLKSGRLQSSISVLSSLLA 194
+ I+ S + LG I + + S
Sbjct: 123 SSQLGIISNKQTHTSAIVKPQSSSCSYICQHC--LVHLGDIARYRNQTSQAESYYRHAAQ 180
Query: 195 VDPNNCDCIGNLGIAYFQSGDMEQSAKCFQDLILKDQNHPAALINYAALL 244
+ P+N L I GD + + I PAA N L
Sbjct: 181 LVPSNGQPYNQLAILASSKGDHLTTIFYYCRSIAVKFPFPAASTNLQKAL 230
|
| >d1ya0a1 a.118.8.1 (A:1-497) SMG-7 {Human (Homo sapiens) [TaxId: 9606]} Length = 497 | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: SMG-7 species: Human (Homo sapiens) [TaxId: 9606]
Score = 48.6 bits (115), Expect = 1e-06
Identities = 12/151 (7%), Positives = 31/151 (20%), Gaps = 17/151 (11%)
Query: 185 SISVLSSLLAVDPNNCDCIGNLGIAYFQSGDMEQSAKCFQDLILKDQNHPAALINYAALL 244
S L + + D + ++ +Q +++ D + L
Sbjct: 5 SAQYLRQAEVLKADMTDSKLGPAEVWTSRQALQD---LYQKMLVTDLEYALDKKVEQDLW 61
Query: 245 LCKYGSVLA-------------GAGANTGEGACLDQA-SAVNVAKECLLAALKADPKAAH 290
+ + + + L+ A + L D
Sbjct: 62 NHAFKNQITTLQGQAKNRANPNRSEVQANLSLFLEAASGFYTQLLQELCTVFNVDLPCRV 121
Query: 291 IWANLANAYYLTGDHRSSGKCLEKAAKLEPN 321
+ L + K +
Sbjct: 122 KSSQLGIISNKQTHTSAIVKPQSSSCSYICQ 152
|
| >d1ya0a1 a.118.8.1 (A:1-497) SMG-7 {Human (Homo sapiens) [TaxId: 9606]} Length = 497 | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: SMG-7 species: Human (Homo sapiens) [TaxId: 9606]
Score = 47.1 bits (111), Expect = 3e-06
Identities = 20/176 (11%), Positives = 42/176 (23%), Gaps = 29/176 (16%)
Query: 72 PKNAHAHFLLGLMYQRLGQPLKAVSSYEKAEEILLRCEADIARPELLSLVQIHHAQCLLP 131
LG++ + V + CL+
Sbjct: 117 LPCRVKSSQLGIISNKQTHTSAIVKPQSSS-------------------CSYICQHCLV- 156
Query: 132 ESSGDNSLDKELEPEELEEILSKLKESMQSDTRQAVVWNTLGLILLKSGRLQSSISVLSS 191
+ D + + S + + Q +N L ++ G ++I
Sbjct: 157 -----HLGDIARYRNQTSQAESYYRHAAQLVPSNGQPYNQLAILASSKGDHLTTIFYYCR 211
Query: 192 LLAVDPNNCDCIGNLGIAYFQSGDMEQSAKCFQDLILKDQNHPAALINYAALLLCK 247
+AV NL A ++ + K + A I + +
Sbjct: 212 SIAVKFPFPAASTNLQKALSKALESRDEVKT----KWGVSDFIKAFIKFHGHVYLS 263
|
| >d1ya0a1 a.118.8.1 (A:1-497) SMG-7 {Human (Homo sapiens) [TaxId: 9606]} Length = 497 | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: SMG-7 species: Human (Homo sapiens) [TaxId: 9606]
Score = 39.0 bits (90), Expect = 0.001
Identities = 18/214 (8%), Positives = 55/214 (25%), Gaps = 26/214 (12%)
Query: 274 AKECLLAALKADPKAAHIWANLANAYYLTGDHRSSGKCLEKAAKLEPN----------CM 323
+ + L A A + + +K +
Sbjct: 5 SAQYLRQAEVLKADMTDSKLGPAEVWTSRQALQ---DLYQKMLVTDLEYALDKKVEQDLW 61
Query: 324 STRYAVAVSRIKDAERSQEPTEQLSWAGN-------------EMASILREGDPVQIEPPI 370
+ + ++ ++ +++ + N ++ L V + +
Sbjct: 62 NHAFKNQITTLQGQAKNRANPNRSEVQANLSLFLEAASGFYTQLLQELCTVFNVDLPCRV 121
Query: 371 AWAGFAAVQKTHHEVAAAFETEENELSKMEECAGAGESAFLDQASAVNVAKECLLAALKA 430
+ + +A + + + S + + + + A+ A +
Sbjct: 122 KSSQLGIISNKQTHTSAIVKPQSSSCSYICQHCLVHLGDIARYRNQTSQAESYYRHAAQL 181
Query: 431 DPKAAHIWANLANAYYLTGDHRSSGKCLEKVLMV 464
P + LA GDH ++ + + V
Sbjct: 182 VPSNGQPYNQLAILASSKGDHLTTIFYYCRSIAV 215
|
| >d1zbpa1 e.61.1.1 (A:2-265) Hypothetical protein VPA1032 {Vibrio parahaemolyticus [TaxId: 670]} Length = 264 | Back information, alignment and structure |
|---|
class: Multi-domain proteins (alpha and beta) fold: ImpE-like superfamily: ImpE-like family: ImpE-like domain: Hypothetical protein VPA1032 species: Vibrio parahaemolyticus [TaxId: 670]
Score = 60.4 bits (146), Expect = 6e-11
Identities = 19/162 (11%), Positives = 43/162 (26%), Gaps = 20/162 (12%)
Query: 176 LLKSGRLQSSISVLSSLLAVDPNNCDCIGNLGIAYFQSGDMEQSAKCFQDLILKDQNHPA 235
L G+LQ ++ +L + P + + GD E++ + I +
Sbjct: 6 ALSEGQLQQALELLIEAIKASPKDASLRSSFIELLCIDGDFERADEQLMQSIKLFPEYLP 65
Query: 236 ALINYAALLLCKYGSVLAGAGANTGEGACLDQASAVNVAKECLLAALKADPKAAHIWANL 295
L+ GA T + + +
Sbjct: 66 GASQLRHLVKAAQARKDFAQGAATA--------------------KVLGENEELTKSLVS 105
Query: 296 ANAYYLTGDHRSSGKCLEKAAKLEPNCMSTRYAVAVSRIKDA 337
N ++ D+ + + +L + S ++D
Sbjct: 106 FNLSMVSQDYEQVSELALQIEELRQEKGFLANDTSFSDVRDI 147
|
| >d1zbpa1 e.61.1.1 (A:2-265) Hypothetical protein VPA1032 {Vibrio parahaemolyticus [TaxId: 670]} Length = 264 | Back information, alignment and structure |
|---|
class: Multi-domain proteins (alpha and beta) fold: ImpE-like superfamily: ImpE-like family: ImpE-like domain: Hypothetical protein VPA1032 species: Vibrio parahaemolyticus [TaxId: 670]
Score = 37.3 bits (86), Expect = 0.002
Identities = 10/147 (6%), Positives = 32/147 (21%), Gaps = 22/147 (14%)
Query: 69 RKMPKNAHAHFLLGLMYQRLGQPLKAVSSYEKAEEILLRCEADIARPELLSLVQIHHAQC 128
+ PK+A + G +A ++ ++ P L + A
Sbjct: 24 KASPKDASLRSSFIELLCIDGDFERADEQLMQSIKL-----FPEYLPGASQLRHLVKAAQ 78
Query: 129 LLPESSGDNSLDKELEPEELEEILSKLKESMQSDTRQAVVWNTLGLILLKSGRLQSSISV 188
+ + + + + + S + +
Sbjct: 79 -----------------ARKDFAQGAATAKVLGENEELTKSLVSFNLSMVSQDYEQVSEL 121
Query: 189 LSSLLAVDPNNCDCIGNLGIAYFQSGD 215
+ + + + + D
Sbjct: 122 ALQIEELRQEKGFLANDTSFSDVRDID 148
|
| >d1dcea1 a.118.6.1 (A:1-241,A:351-443) Rab geranylgeranyltransferase alpha-subunit, N-terminal domain {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 334 | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: Protein prenylyltransferase family: Protein prenylyltransferase domain: Rab geranylgeranyltransferase alpha-subunit, N-terminal domain species: Rat (Rattus norvegicus) [TaxId: 10116]
Score = 55.4 bits (132), Expect = 5e-09
Identities = 24/265 (9%), Positives = 50/265 (18%), Gaps = 21/265 (7%)
Query: 66 HVARKMPKNAHAHFLLGLMYQRLGQPLKAVSSYEKAEEILLRCEADIARPELLSLVQIHH 125
+ P A + Q L S + L E+ + H
Sbjct: 54 QILGANPDFATLWNCRREVLQHLETEKSPEESAALVKAELGFLESCLRVNPKSYGTWHHR 113
Query: 126 AQCLLPESSGDNSLDKELEPEELEEILSKLKESMQSDTRQA-VVWNTLGLILLKSGRLQS 184
L L L +++D R + +
Sbjct: 114 CWLL-----------SRLPEPNWARELELCARFLEADERNFHCWDYRRFVAAQAAVAPAE 162
Query: 185 SISVLSSLLAVDPNNCDCIGNLGIAYFQSGDMEQSAKCFQDLILKDQNHPAALINY---- 240
++ SL+ + +N Q S + + N
Sbjct: 163 ELAFTDSLITRNFSNYSSWHYRSCLLPQLHPQPDSGPQGRLPENVLLKELELVQNAFFTD 222
Query: 241 -----AALLLCKYGSVLAGAGANTGEGACLDQASAVNVAKECLLAALKADPKAAHIWANL 295
A + + + L + L
Sbjct: 223 PNDQSAWFYHRWLLGRAEPLFRCELSVEKSTVLQSELESCKELQELEPENKWCLLTIILL 282
Query: 296 ANAYYLTGDHRSSGKCLEKAAKLEP 320
A + + + ++P
Sbjct: 283 MRALDPLLYEKETLQYFSTLKAVDP 307
|
| >d1dcea1 a.118.6.1 (A:1-241,A:351-443) Rab geranylgeranyltransferase alpha-subunit, N-terminal domain {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 334 | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: Protein prenylyltransferase family: Protein prenylyltransferase domain: Rab geranylgeranyltransferase alpha-subunit, N-terminal domain species: Rat (Rattus norvegicus) [TaxId: 10116]
Score = 43.4 bits (101), Expect = 3e-05
Identities = 21/180 (11%), Positives = 38/180 (21%), Gaps = 27/180 (15%)
Query: 66 HVARKMPKNAHAHFLLGLMYQRLGQPLKAVSSYEKAEEILLRCEADIARPELLSLVQIHH 125
+ + N + + +L + E + + L LVQ
Sbjct: 169 SLITRNFSNYSSWHYRSCLLPQLHPQPDSGPQGRLPENV---------LLKELELVQNAF 219
Query: 126 AQCLLPESSGDNSLDKELEPEELEEILSKLKESMQSDTRQAVVWNTLGLILLKSGRLQSS 185
+S+ E S
Sbjct: 220 FTDPNDQSAWFYHRWLLGRAE------------------PLFRCELSVEKSTVLQSELES 261
Query: 186 ISVLSSLLAVDPNNCDCIGNLGIAYFQSGDMEQSAKCFQDLILKDQNHPAALINYAALLL 245
L L + I L A +++ + F L D A L + + L
Sbjct: 262 CKELQELEPENKWCLLTIILLMRALDPLLYEKETLQYFSTLKAVDPMRAAYLDDLRSKFL 321
|
| >d1fcha_ a.118.8.1 (A:) Peroxin pex5 (peroxisomal targeting signal 1 (PTS1) receptor) {Human (Homo sapiens) [TaxId: 9606]} Length = 323 | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Peroxin pex5 (peroxisomal targeting signal 1 (PTS1) receptor) species: Human (Homo sapiens) [TaxId: 9606]
Score = 52.9 bits (125), Expect = 3e-08
Identities = 37/295 (12%), Positives = 85/295 (28%), Gaps = 11/295 (3%)
Query: 172 LGLILLKSGRLQSSISVLSSLLAVDPNNCDCIGNLGIAYFQSGDMEQSAKCFQDLILKDQ 231
GL L+ G L +++ + + + DP + + LG ++ + + +
Sbjct: 25 EGLRRLQEGDLPNAVLLFEAAVQQDPKHMEAWQYLGTTQAENEQELLAISALRRCLELKP 84
Query: 232 NHPAALINYAALLLCKYGSVLAGAGANTGEGACLDQASAVNVAKECLLAALKADPKAAHI 291
++ AL+ A + A A V A A
Sbjct: 85 DNQTALMALAVSFTNESLQRQACEILRDWLRYTPAYAHLVT------PAEEGAGGAGLGP 138
Query: 292 WANLANAYYLTGDHRSSGKCLEKAAKLEPNCMSTRY----AVAVSRIKDAERSQEPTEQL 347
+ + + A +L+P + V + + +++ +
Sbjct: 139 SKRILGSLLSDSLFLEVKELFLAAVRLDPTSIDPDVQCGLGVLFNLSGEYDKAVDCFTAA 198
Query: 348 SWAGNEMASILREGDPVQIEPPIAWAGFAAVQKTHHEVAAAFETEENELSKMEECAGAGE 407
+ + + AA ++ E+ + L GA
Sbjct: 199 LSVRPNDYLLWNKLGATLANGNQSEEAVAAYRR-ALELQPGYIRSRYNLGISCINLGAHR 257
Query: 408 SAFLDQASAVNVAKECLLAALKADPKAAHIWANLANAYYLTGDHRSSGKCLEKVL 462
A A+N+ ++ + + +IW+ L A + G + G + L
Sbjct: 258 EAVEHFLEALNMQRKSRGPRGEGGAMSENIWSTLRLALSMLGQSDAYGAADARDL 312
|
| >d1fcha_ a.118.8.1 (A:) Peroxin pex5 (peroxisomal targeting signal 1 (PTS1) receptor) {Human (Homo sapiens) [TaxId: 9606]} Length = 323 | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Peroxin pex5 (peroxisomal targeting signal 1 (PTS1) receptor) species: Human (Homo sapiens) [TaxId: 9606]
Score = 43.6 bits (101), Expect = 3e-05
Identities = 36/265 (13%), Positives = 62/265 (23%), Gaps = 28/265 (10%)
Query: 205 NLGIAYFQSGDMEQSAKCFQDLILKDQNHPAALINYAALLLCKYGSVLAGAGANTGEGAC 264
G+ Q GD+ + F+ + +D H A G
Sbjct: 24 EEGLRRLQEGDLPNAVLLFEAAVQQDPKHMEAWQYL---------------------GTT 62
Query: 265 LDQASAVNVAKECLLAALKADPKAAHIWANLANAYYLTGDHRSSGKCLEKAAKLEPNCMS 324
+ +A L L+ P LA ++ R + + L + P
Sbjct: 63 QAENEQELLAISALRRCLELKPDNQTALMALAVSFTNESLQRQACEILRDWLRYTPAYAH 122
Query: 325 TRYAVAVSR-------IKDAERSQEPTEQLSWAGNEMASILREGDPVQIEPPIAWAGFAA 377
K S + +R G
Sbjct: 123 LVTPAEEGAGGAGLGPSKRILGSLLSDSLFLEVKELFLAAVRLDPTSIDPDVQCGLGVLF 182
Query: 378 VQKTHHEVAAAFETEENELSKMEECAGAGESAFLDQASAVNVAKECLLAALKADPKAAHI 437
++ A T + + A L + A AL+ P
Sbjct: 183 NLSGEYDKAVDCFTAALSVRPNDYLLWNKLGATLANGNQSEEAVAAYRRALELQPGYIRS 242
Query: 438 WANLANAYYLTGDHRSSGKCLEKVL 462
NL + G HR + + + L
Sbjct: 243 RYNLGISCINLGAHREAVEHFLEAL 267
|
| >d1fcha_ a.118.8.1 (A:) Peroxin pex5 (peroxisomal targeting signal 1 (PTS1) receptor) {Human (Homo sapiens) [TaxId: 9606]} Length = 323 | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Peroxin pex5 (peroxisomal targeting signal 1 (PTS1) receptor) species: Human (Homo sapiens) [TaxId: 9606]
Score = 42.9 bits (99), Expect = 5e-05
Identities = 41/262 (15%), Positives = 70/262 (26%), Gaps = 31/262 (11%)
Query: 72 PKNAHAHFLLGLMYQRLGQPLKAVSSYEKAEEILLRCEADIARPELLSLVQIHHAQCLLP 131
PK+ A LG Q L A+S+ + E+ + + + + Q
Sbjct: 50 PKHMEAWQYLGTTQAENEQELLAISALRRCLELKPDNQTALMALAVSFTNESLQRQAC-- 107
Query: 132 ESSGDNSLDKELEPEELEEILSKLKESMQSDTRQAVVWNTLGLILLKSGRLQSSISVLSS 191
L L L E LG LL + +
Sbjct: 108 -----EILRDWLRYTPAYAHLVTPAEEGAGGAGLGPSKRILG-SLLSDSLFLEVKELFLA 161
Query: 192 LLAV--DPNNCDCIGNLGIAYFQSGDMEQSAKCFQDLILKDQNHPAALINYAALLLCKYG 249
+ + + D LG+ + SG+ +++ CF + N
Sbjct: 162 AVRLDPTSIDPDVQCGLGVLFNLSGEYDKAVDCFTAALSVRPNDYLLWNKL--------- 212
Query: 250 SVLAGAGANTGEGACLDQASAVNVAKECLLAALKADPKAAHIWANLANAYYLTGDHRSSG 309
GA L + A AL+ P NL + G HR +
Sbjct: 213 ------------GATLANGNQSEEAVAAYRRALELQPGYIRSRYNLGISCINLGAHREAV 260
Query: 310 KCLEKAAKLEPNCMSTRYAVAV 331
+ +A ++ R
Sbjct: 261 EHFLEALNMQRKSRGPRGEGGA 282
|
| >d1fcha_ a.118.8.1 (A:) Peroxin pex5 (peroxisomal targeting signal 1 (PTS1) receptor) {Human (Homo sapiens) [TaxId: 9606]} Length = 323 | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Peroxin pex5 (peroxisomal targeting signal 1 (PTS1) receptor) species: Human (Homo sapiens) [TaxId: 9606]
Score = 37.9 bits (86), Expect = 0.002
Identities = 16/75 (21%), Positives = 23/75 (30%), Gaps = 2/75 (2%)
Query: 392 EENELSKMEECAGAGESAFLDQASAVNVAKECLLAALKADPKAAHIWANLANAYYLTGDH 451
EEN L + G Q + A AA++ DPK W L
Sbjct: 12 EENPLRDHPQPFEEGLRRL--QEGDLPNAVLLFEAAVQQDPKHMEAWQYLGTTQAENEQE 69
Query: 452 RSSGKCLEKVLMVYC 466
+ L + L +
Sbjct: 70 LLAISALRRCLELKP 84
|
| >d1xnfa_ a.118.8.1 (A:) Lipoprotein NlpI {Escherichia coli [TaxId: 562]} Length = 259 | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Lipoprotein NlpI species: Escherichia coli [TaxId: 562]
Score = 48.3 bits (113), Expect = 7e-07
Identities = 38/277 (13%), Positives = 72/277 (25%), Gaps = 43/277 (15%)
Query: 53 REEKVSSLKTGLVHVARKMPKNAHAHFLLGLMYQRLGQPLKAVSSYEKAEEILLRCEADI 112
+E ++ ++ L A + A + G++Y LG A + + +A D+
Sbjct: 15 QEVILARMEQILASRALTDDERAQLLYERGVLYDSLGLRALARNDFSQAL----AIRPDM 70
Query: 113 ARPELLSLVQIHHAQCLLPESSGDNSLDKELEPEELEEILSKLKESMQSDTRQAVVWNTL 172
+ + A + ++ D
Sbjct: 71 PEVFNYLGIYLTQAGNF-------------------DAAYEAFDSVLELDPTYNYAHLNR 111
Query: 173 GLILLKSGRLQSSISVLSSLLAVDPNNCDCIGNLGIAYFQSGDMEQSAKCFQDLILKDQN 232
G+ L GR + + L + DPN+ L +A + + + Q D+
Sbjct: 112 GIALYYGGRDKLAQDDLLAFYQDDPNDPFRSLWLYLAEQKLDEKQAKEVLKQHFEKSDKE 171
Query: 233 HPAALINYAALLLCKYGSVLAGAGANTGEGACLDQASAVNVAKECLLAALKADPKAAHIW 292
I L + + K +
Sbjct: 172 QWGWNIVEFYLGNISEQT-------------------LMERLKADATDNTSLAEHLSETN 212
Query: 293 ANLANAYYLTGDHRSSGKCLEKAAKLEP-NCMSTRYA 328
L Y GD S+ + A N + RYA
Sbjct: 213 FYLGKYYLSLGDLDSATALFKLAVANNVHNFVEHRYA 249
|
| >d1xnfa_ a.118.8.1 (A:) Lipoprotein NlpI {Escherichia coli [TaxId: 562]} Length = 259 | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Lipoprotein NlpI species: Escherichia coli [TaxId: 562]
Score = 37.1 bits (84), Expect = 0.003
Identities = 23/224 (10%), Positives = 47/224 (20%), Gaps = 26/224 (11%)
Query: 265 LDQASAVNVAKECLLAALKADPKAAHIWANLANAYYLTGDHRSSGKCLEKAAKLEPNCMS 324
L Q + ++ L + D + A + Y G + +A + P+
Sbjct: 13 LQQEVILARMEQILASRALTDDERAQLLYERGVLYDSLGLRALARNDFSQALAIRPDMPE 72
Query: 325 TRYAVAVSRIKDAERSQEPTEQLSWAG----------------------NEMASILREGD 362
+ + + S L
Sbjct: 73 VFNYLGIYLTQAGNFDAAYEAFDSVLELDPTYNYAHLNRGIALYYGGRDKLAQDDLLAFY 132
Query: 363 PVQIEPPIAWAGFAAVQKTHHEVAAAFETEENELSKMEECAGAGESAFLDQASAVNV--- 419
P ++ E A +++ +E G F +
Sbjct: 133 QDDPNDPFRSLWLYLAEQKLDEKQAKEVLKQHFEKSDKEQWGWNIVEFYLGNISEQTLME 192
Query: 420 -AKECLLAALKADPKAAHIWANLANAYYLTGDHRSSGKCLEKVL 462
K + L Y GD S+ + +
Sbjct: 193 RLKADATDNTSLAEHLSETNFYLGKYYLSLGDLDSATALFKLAV 236
|
| >d1hh8a_ a.118.8.1 (A:) Neutrophil cytosolic factor 2 (NCF-2, p67-phox) {Human (Homo sapiens) [TaxId: 9606]} Length = 192 | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Neutrophil cytosolic factor 2 (NCF-2, p67-phox) species: Human (Homo sapiens) [TaxId: 9606]
Score = 44.8 bits (105), Expect = 5e-06
Identities = 27/174 (15%), Positives = 59/174 (33%), Gaps = 8/174 (4%)
Query: 165 QAVVWNTLGLILLKSGRLQSSISVLSSLLAVDPNNCDCIGNLGIAYFQSGDMEQSAKCFQ 224
+A+ G++ + ++ + AV + N+G Y +M ++ K F
Sbjct: 4 EAISLWNEGVLAADKKDWKGALD---AFSAVQDPHSRICFNIGCMYTILKNMTEAEKAFT 60
Query: 225 DLILKDQNHPAALINYAALLLCKYGSVLAGAGANTGEGACLDQASAVNVAKECLLAALKA 284
I +D++ A L LA L Q N + + L+
Sbjct: 61 RSINRDKHLAVAYFQRGMLYYQTEKYDLAIKDLKE----ALIQLRG-NQLIDYKILGLQF 115
Query: 285 DPKAAHIWANLANAYYLTGDHRSSGKCLEKAAKLEPNCMSTRYAVAVSRIKDAE 338
A + N+A Y + + + + L A ++ ++ A+ + +
Sbjct: 116 KLFACEVLYNIAFMYAKKEEWKKAEEQLALATSMKSEPRHSKIDKAMECVWKQK 169
|
| >d1hz4a_ a.118.8.2 (A:) Transcription factor MalT domain III {Escherichia coli [TaxId: 562]} Length = 366 | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Transcription factor MalT domain III domain: Transcription factor MalT domain III species: Escherichia coli [TaxId: 562]
Score = 46.1 bits (107), Expect = 5e-06
Identities = 37/323 (11%), Positives = 82/323 (25%), Gaps = 24/323 (7%)
Query: 157 ESMQSDTRQAVVWNTLGLILLKSGRLQSSISVLSSLLAVDPNN-----CDCIGNLGIAYF 211
+ ++ DT A + + G + + L P LG
Sbjct: 3 KDIREDTMHAEFNALRAQVAINDGNPDEAERLAKLALEELPPGWFYSRIVATSVLGEVLH 62
Query: 212 QSGDMEQSAKCFQDLILKDQNHPAALINYAALLLCKYGSVLAGAGANTGEGACLDQASAV 271
G++ +S Q + H +YA L + +L G ++A
Sbjct: 63 CKGELTRSLALMQQTEQMARQHDV--WHYALWSLIQQSEILFAQGFLQTAWETQEKA--- 117
Query: 272 NVAKECLLAALKADPKAAHIWANLANAYYLTGDHRSSGKCLEKAAKLEPNCMSTRYAVAV 331
+ L+ P + A + + ++ + + +
Sbjct: 118 --FQLINEQHLEQLPMHEFLVRIRAQLLWAWARLDEAEASARSGIEVLSSYQPQQQLQCL 175
Query: 332 SRIKDAERSQEPTEQLSWAGNEMASILREGDPVQIEPPIAWAGFAAVQKTHHEVAAAFET 391
+ + ++ + N + ++L G A + + AAA
Sbjct: 176 AMLIQCSLARGDLDNARSQLNRLENLLGNGKYHSDWISNANKVRVIYWQMTGDKAAAANW 235
Query: 392 EENELSKMEECAGAGESAFLDQASA------VNVAKECLLAAL------KADPKAAHIWA 439
+ + + + A A A+ L +
Sbjct: 236 LRHTAKPEFANNHFLQGQWRNIARAQILLGEFEPAEIVLEELNENARSLRLMSDLNRNLL 295
Query: 440 NLANAYYLTGDHRSSGKCLEKVL 462
L Y+ G + + L L
Sbjct: 296 LLNQLYWQAGRKSDAQRVLLDAL 318
|
| >d2h6fa1 a.118.6.1 (A:55-369) Protein farnesyltransferase alpha-subunit {Human (Homo sapiens) [TaxId: 9606]} Length = 315 | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: Protein prenylyltransferase family: Protein prenylyltransferase domain: Protein farnesyltransferase alpha-subunit species: Human (Homo sapiens) [TaxId: 9606]
Score = 45.3 bits (106), Expect = 9e-06
Identities = 17/180 (9%), Positives = 47/180 (26%), Gaps = 20/180 (11%)
Query: 168 VWNTLGLILLKSGRLQSSISVLSSLLAVDPNNCDCIGNLGIAYFQSGDMEQSAKCFQDLI 227
V++ +L + R + + + + ++ N + + I
Sbjct: 45 VYDYFRAVLQRDERSERAFKLTRDAIELNAANYTVWHFRRVLLKSLQKDLHEEMNYITAI 104
Query: 228 LKDQNHPAALINYAALLLCK--------------YGSVLAGAGANTGEGACLDQASAVNV 273
+++Q + ++ +L+ A + + +
Sbjct: 105 IEEQPKNYQVWHHRRVLVEWLRDPSQELEFIADILNQDAKNYHAWQHRQWVIQEFKLWDN 164
Query: 274 AKECLLAALKADPKAAHIWANLANAYYLTGDHRSSGKCLE------KAAKLEPNCMSTRY 327
+ + LK D + +W T + + KL P+ S
Sbjct: 165 ELQYVDQLLKEDVRNNSVWNQRYFVISNTTGYNDRAVLEREVQYTLEMIKLVPHNESAWN 224
|
| >d2pqrb1 a.118.8.1 (B:5-128) Mitochondria fission protein Fis1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 124 | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Mitochondria fission protein Fis1 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Score = 40.5 bits (95), Expect = 5e-05
Identities = 17/100 (17%), Positives = 41/100 (41%), Gaps = 7/100 (7%)
Query: 143 LEPEELEEILSKL-KESMQSDTRQAVVWNTLGLILLKSGR---LQSSISVLSSLLAVDPN 198
L P++LE + ++ E + T Q+ L+KS + + +L+ + +
Sbjct: 13 LYPQQLEILRQQVVSEGGPTATIQS--RFNYAWGLIKSTDVNDERLGVKILTDIYKEAES 70
Query: 199 N-CDCIGNLGIAYFQSGDMEQSAKCFQDLILKDQNHPAAL 237
+C+ L I ++ G+ + + L ++N+
Sbjct: 71 RRRECLYYLTIGCYKLGEYSMAKRYVDTLFEHERNNKQVG 110
|
| >d1qqea_ a.118.8.1 (A:) Vesicular transport protein sec17 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 290 | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Vesicular transport protein sec17 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Score = 38.8 bits (89), Expect = 0.001
Identities = 20/197 (10%), Positives = 42/197 (21%), Gaps = 16/197 (8%)
Query: 287 KAAHIWANLANAYYLTGDHRSSGKCLEKAAKLEPNCMSTR-YAVAVSRIKDAERSQEPTE 345
+AA + A Y L + +G KAA + + +S +
Sbjct: 35 EAADLCVQAATIYRLRKELNLAGDSFLKAADYQKKAGNEDEAGNTYVEAYKCFKSGGNSV 94
Query: 346 QLSWAGNEMASILREGDPVQIEPPI-------AWAGFAAVQKTHHEVAAAFETEENELSK 398
+ I + K A E + S
Sbjct: 95 NAVDSLENAIQIFTHRGQFRRGANFKFELGEILENDLHDYAKAIDCYELAGEWYAQDQSV 154
Query: 399 MEECAGAGESA-FLDQASAVNVAKECLLAALKADPK-------AAHIWANLANAYYLTGD 450
+ A A + +K+ + D
Sbjct: 155 ALSNKCFIKCADLKALDGQYIEASDIYSKLIKSSMGNRLSQWSLKDYFLKKGLCQLAATD 214
Query: 451 HRSSGKCLEKVLMVYCS 467
++ + L++ +
Sbjct: 215 AVAAARTLQEGQSEDPN 231
|
| >d1elra_ a.118.8.1 (A:) Hop {Human (Homo sapiens) [TaxId: 9606]} Length = 128 | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Hop species: Human (Homo sapiens) [TaxId: 9606]
Score = 36.4 bits (83), Expect = 0.002
Identities = 17/117 (14%), Positives = 35/117 (29%), Gaps = 14/117 (11%)
Query: 205 NLGIAYFQSGDMEQSAKCFQDLILKDQNHPAALINYAALLLCKYGSVLAGAGANTGEGAC 264
LG ++ D + + K + D + + N AA+ K G
Sbjct: 9 ELGNDAYKKKDFDTALKHYDKAKELDPTNMTYITNQAAVYFEK--------------GDY 54
Query: 265 LDQASAVNVAKECLLAALKADPKAAHIWANLANAYYLTGDHRSSGKCLEKAAKLEPN 321
A E + + A +A + N+Y+ ++ + K+
Sbjct: 55 NKCRELCEKAIEVGRENREDYRQIAKAYARIGNSYFKEEKYKDAIHFYNKSLAEHRT 111
|
| >d1kt1a1 a.118.8.1 (A:254-421) FKBP51, C-terminal domain {Monkey (Saimiri boliviensis) [TaxId: 27679]} Length = 168 | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: FKBP51, C-terminal domain species: Monkey (Saimiri boliviensis) [TaxId: 27679]
Score = 36.1 bits (82), Expect = 0.003
Identities = 21/151 (13%), Positives = 47/151 (31%), Gaps = 8/151 (5%)
Query: 71 MPKNAHAHFLLGLMYQRLGQPLKAVSSYEKAEEILLRCEADIARPELLSLVQIHHAQCLL 130
+ A G +Y + G+ ++AV Y K L + + L
Sbjct: 11 KLEQAAIVKEKGTVYFKGGKYVQAVIQYGKIVSWL--EMEYGLSEKESKASESFLLAAFL 68
Query: 131 PESSGDNSLDKELEPEELEEILSKLKESMQSDTRQAVVWNTLGLILLKSGRLQSSISVLS 190
N L+ E + + +++ D+ G L +S+
Sbjct: 69 ------NLAMCYLKLREYTKAVECCDKALGLDSANEKGLYRRGEAQLLMNEFESAKGDFE 122
Query: 191 SLLAVDPNNCDCIGNLGIAYFQSGDMEQSAK 221
+L V+P N + + ++ + + +
Sbjct: 123 KVLEVNPQNKAARLQIFMCQKKAKEHNERDR 153
|
Homologous Domains Detected by HHsearch
Original result of HHsearch against SCOP70(version1.75) database
| ID | Alignment Graph | Length |
Definition |
Probability |
| Query | 470 | |||
| d1w3ba_ | 388 | O-GlcNAc transferase p110 subunit, OGT {Human (Hom | 100.0 | |
| d1w3ba_ | 388 | O-GlcNAc transferase p110 subunit, OGT {Human (Hom | 100.0 | |
| d1fcha_ | 323 | Peroxin pex5 (peroxisomal targeting signal 1 (PTS1 | 99.97 | |
| d1fcha_ | 323 | Peroxin pex5 (peroxisomal targeting signal 1 (PTS1 | 99.97 | |
| d2h6fa1 | 315 | Protein farnesyltransferase alpha-subunit {Human ( | 99.94 | |
| d2h6fa1 | 315 | Protein farnesyltransferase alpha-subunit {Human ( | 99.93 | |
| d1dcea1 | 334 | Rab geranylgeranyltransferase alpha-subunit, N-ter | 99.91 | |
| d1dcea1 | 334 | Rab geranylgeranyltransferase alpha-subunit, N-ter | 99.91 | |
| d1xnfa_ | 259 | Lipoprotein NlpI {Escherichia coli [TaxId: 562]} | 99.9 | |
| d1xnfa_ | 259 | Lipoprotein NlpI {Escherichia coli [TaxId: 562]} | 99.89 | |
| d1hz4a_ | 366 | Transcription factor MalT domain III {Escherichia | 99.89 | |
| d1hz4a_ | 366 | Transcription factor MalT domain III {Escherichia | 99.87 | |
| d1elwa_ | 117 | Hop {Human (Homo sapiens) [TaxId: 9606]} | 99.75 | |
| d1ya0a1 | 497 | SMG-7 {Human (Homo sapiens) [TaxId: 9606]} | 99.74 | |
| d2onda1 | 308 | Cleavage stimulation factor 77 kDa subunit CSTF3 { | 99.74 | |
| d1hh8a_ | 192 | Neutrophil cytosolic factor 2 (NCF-2, p67-phox) {H | 99.73 | |
| d1qqea_ | 290 | Vesicular transport protein sec17 {Baker's yeast ( | 99.72 | |
| d1elwa_ | 117 | Hop {Human (Homo sapiens) [TaxId: 9606]} | 99.72 | |
| d1ya0a1 | 497 | SMG-7 {Human (Homo sapiens) [TaxId: 9606]} | 99.72 | |
| d2onda1 | 308 | Cleavage stimulation factor 77 kDa subunit CSTF3 { | 99.72 | |
| d1a17a_ | 159 | Protein phosphatase 5 {Human (Homo sapiens) [TaxId | 99.72 | |
| d1hh8a_ | 192 | Neutrophil cytosolic factor 2 (NCF-2, p67-phox) {H | 99.71 | |
| d1qqea_ | 290 | Vesicular transport protein sec17 {Baker's yeast ( | 99.71 | |
| d1a17a_ | 159 | Protein phosphatase 5 {Human (Homo sapiens) [TaxId | 99.68 | |
| d1ouva_ | 265 | Cysteine rich protein C (HcpC) {Helicobacter pylor | 99.65 | |
| d2c2la1 | 201 | STIP1 homology and U box-containing protein 1, STU | 99.64 | |
| d1ihga1 | 169 | Cyclophilin 40 {Cow (Bos taurus) [TaxId: 9913]} | 99.64 | |
| d2c2la1 | 201 | STIP1 homology and U box-containing protein 1, STU | 99.61 | |
| d1elra_ | 128 | Hop {Human (Homo sapiens) [TaxId: 9606]} | 99.61 | |
| d1p5qa1 | 170 | FKBP52 (FKBP4), C-terminal domain {Human (Homo sap | 99.6 | |
| d1p5qa1 | 170 | FKBP52 (FKBP4), C-terminal domain {Human (Homo sap | 99.58 | |
| d1hxia_ | 112 | Peroxin pex5 (peroxisomal targeting signal 1 (PTS1 | 99.57 | |
| d1hxia_ | 112 | Peroxin pex5 (peroxisomal targeting signal 1 (PTS1 | 99.57 | |
| d1zu2a1 | 145 | Mitochondrial import receptor subunit tom20-3 {Tha | 99.56 | |
| d1kt1a1 | 168 | FKBP51, C-terminal domain {Monkey (Saimiri bolivie | 99.55 | |
| d2fbna1 | 153 | Putative 70 kda peptidylprolyl isomerase PFL2275c | 99.55 | |
| d2fbna1 | 153 | Putative 70 kda peptidylprolyl isomerase PFL2275c | 99.55 | |
| d1nzna_ | 122 | Mitochondria fission protein Fis1 {Human (Homo sap | 99.55 | |
| d1kt1a1 | 168 | FKBP51, C-terminal domain {Monkey (Saimiri bolivie | 99.54 | |
| d1ihga1 | 169 | Cyclophilin 40 {Cow (Bos taurus) [TaxId: 9913]} | 99.54 | |
| d1nzna_ | 122 | Mitochondria fission protein Fis1 {Human (Homo sap | 99.52 | |
| d1zu2a1 | 145 | Mitochondrial import receptor subunit tom20-3 {Tha | 99.52 | |
| d1ouva_ | 265 | Cysteine rich protein C (HcpC) {Helicobacter pylor | 99.52 | |
| d1elra_ | 128 | Hop {Human (Homo sapiens) [TaxId: 9606]} | 99.45 | |
| d1tjca_ | 95 | Prolyl 4-hydroxylase alpha-1 subunit, P4HA1 {Human | 99.26 | |
| d1tjca_ | 95 | Prolyl 4-hydroxylase alpha-1 subunit, P4HA1 {Human | 99.21 | |
| d2hr2a1 | 156 | Hypothetical protein CT2138 {Chlorobium tepidum [T | 99.19 | |
| d1zbpa1 | 264 | Hypothetical protein VPA1032 {Vibrio parahaemolyti | 99.15 | |
| d1zbpa1 | 264 | Hypothetical protein VPA1032 {Vibrio parahaemolyti | 99.14 | |
| d2hr2a1 | 156 | Hypothetical protein CT2138 {Chlorobium tepidum [T | 99.11 | |
| d2ff4a2 | 179 | Probable regulatory protein EmbR, middle domain {M | 99.04 | |
| d2ff4a2 | 179 | Probable regulatory protein EmbR, middle domain {M | 98.95 | |
| d2pqrb1 | 124 | Mitochondria fission protein Fis1 {Baker's yeast ( | 98.55 | |
| d1klxa_ | 133 | Cysteine rich protein B (HcpB) {Helicobacter pylor | 98.31 | |
| d1klxa_ | 133 | Cysteine rich protein B (HcpB) {Helicobacter pylor | 98.31 | |
| d2pqrb1 | 124 | Mitochondria fission protein Fis1 {Baker's yeast ( | 98.17 | |
| d1qsaa1 | 450 | 70 KDa soluble lytic transglycosylase (SLT70), sup | 97.59 | |
| d1b89a_ | 336 | Clathrin heavy chain proximal leg segment {Cow (Bo | 96.84 | |
| d1b89a_ | 336 | Clathrin heavy chain proximal leg segment {Cow (Bo | 96.78 | |
| d1qsaa1 | 450 | 70 KDa soluble lytic transglycosylase (SLT70), sup | 96.67 | |
| d2crba1 | 83 | Nuclear receptor binding factor 2, NRBF2, N-termin | 81.42 |
| >d1w3ba_ a.118.8.1 (A:) O-GlcNAc transferase p110 subunit, OGT {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: O-GlcNAc transferase p110 subunit, OGT species: Human (Homo sapiens) [TaxId: 9606]
Probab=100.00 E-value=7.8e-40 Score=299.73 Aligned_cols=366 Identities=17% Similarity=0.180 Sum_probs=304.3
Q ss_pred hhhhhhhhhhhHHHHHHHHHHHHhcCCCCcchhhhcccchhhhhcChhhHHHHHHHHHHhCCCChhHHHHHHHHHHHhCC
Q 012143 11 EGKKINKLGKCRSRISSKMDSALEFGVDADGDQSGLGTSSSSREEKVSSLKTGLVHVARKMPKNAHAHFLLGLMYQRLGQ 90 (470)
Q Consensus 11 ~~~~~~~~g~~~~a~~~~~~~~l~~~p~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~l~~~~~~~g~ 90 (470)
-|..+++.|++++|+ ..++++++.+|+++.++..+|.+ +...|++++|+..|+++++.+|+++.++..+|.++...|+
T Consensus 5 la~~~~~~G~~~~A~-~~~~~~l~~~p~~~~~~~~la~~-~~~~~~~~~A~~~~~~al~~~p~~~~a~~~l~~~~~~~g~ 82 (388)
T d1w3ba_ 5 LAHREYQAGDFEAAE-RHCMQLWRQEPDNTGVLLLLSSI-HFQCRRLDRSAHFSTLAIKQNPLLAEAYSNLGNVYKERGQ 82 (388)
T ss_dssp HHHHHHHHTCHHHHH-HHHHHHHHHCTTCHHHHHHHHHH-HHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTC
T ss_pred HHHHHHHcCCHHHHH-HHHHHHHHhCCCCHHHHHHHHHH-HHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHhhhhcc
Confidence 467788999999999 99999999999999999999999 9999999999999999999999999999999999999999
Q ss_pred hhHHHHHHHHHHHHHhhhhcccchhhhHHHHHHhhhccccc-----------cccCC-----CccccccCcccHHHHHHH
Q 012143 91 PLKAVSSYEKAEEILLRCEADIARPELLSLVQIHHAQCLLP-----------ESSGD-----NSLDKELEPEELEEILSK 154 (470)
Q Consensus 91 ~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----------~~~~~-----~~~~~~~~~~~~~~A~~~ 154 (470)
+++|+..+..+....|.......... .......... ..... .........+....+...
T Consensus 83 ~~~A~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 157 (388)
T d1w3ba_ 83 LQEAIEHYRHALRLKPDFIDGYINLA-----AALVAAGDMEGAVQAYVSALQYNPDLYCVRSDLGNLLKALGRLEEAKAC 157 (388)
T ss_dssp HHHHHHHHHHHHHHCTTCHHHHHHHH-----HHHHHHSCSSHHHHHHHHHHHHCTTCTHHHHHHHHHHHTTSCHHHHHHH
T ss_pred cccccccccccccccccccccccccc-----ccccccccccccccccccccccccccccccccccccccccchhhhhHHH
Confidence 99999999999998765422111000 0000000000 00000 000112345666778888
Q ss_pred HHHhhhcCccchHHHHHHHHHHHHcCChHHHHHHHHHHhhcCCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCh
Q 012143 155 LKESMQSDTRQAVVWNTLGLILLKSGRLQSSISVLSSLLAVDPNNCDCIGNLGIAYFQSGDMEQSAKCFQDLILKDQNHP 234 (470)
Q Consensus 155 ~~~~~~~~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~ 234 (470)
+.+.+...|+++.++..+|.++...|++++|...++++++.+|+++.++..+|.++...|++++|+..++++...+|...
T Consensus 158 ~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~ 237 (388)
T d1w3ba_ 158 YLKAIETQPNFAVAWSNLGCVFNAQGEIWLAIHHFEKAVTLDPNFLDAYINLGNVLKEARIFDRAVAAYLRALSLSPNHA 237 (388)
T ss_dssp HHHHHHHCTTCHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHTTTCTTHHHHHHHHHHHHCTTCH
T ss_pred HHHhhccCcchhHHHHhhcccccccCcHHHHHHHHHHHHHhCcccHHHHHHHhhhhhccccHHHHHHHHHHhHHHhhhHH
Confidence 88888888888888888888888889999999999888888888888888888888888999999998888888888888
Q ss_pred HHHHHHHHHHHhhhcccccccccchhhhhHHHhcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCChhHHHHHHHH
Q 012143 235 AALINYAALLLCKYGSVLAGAGANTGEGACLDQASAVNVAKECLLAALKADPKAAHIWANLANAYYLTGDHRSSGKCLEK 314 (470)
Q Consensus 235 ~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~ 314 (470)
..+..+|.++. ..|++++|+..|+++++++|+++.++..+|.++...|++++|+..+++
T Consensus 238 ~~~~~l~~~~~---------------------~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~ 296 (388)
T d1w3ba_ 238 VVHGNLACVYY---------------------EQGLIDLAIDTYRRAIELQPHFPDAYCNLANALKEKGSVAEAEDCYNT 296 (388)
T ss_dssp HHHHHHHHHHH---------------------HTTCHHHHHHHHHHHHHTCSSCHHHHHHHHHHHHHHSCHHHHHHHHHH
T ss_pred HHHHHHHHHHH---------------------HCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHh
Confidence 88888877776 688888999999998888888888888889998888999999888888
Q ss_pred HHhcCCCcccHHHHHHHHHHHHhhhccCchHHhhhhHHHHHHHhhcCCCCCCCcHHHHHHHHHHHhccccHHHHHHHHHH
Q 012143 315 AAKLEPNCMSTRYAVAVSRIKDAERSQEPTEQLSWAGNEMASILREGDPVQIEPPIAWAGFAAVQKTHHEVAAAFETEEN 394 (470)
Q Consensus 315 a~~~~p~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~ 394 (470)
++...|.+. ..+..++.++...|++++|+..+++
T Consensus 297 ~~~~~~~~~----------------------------------------------~~~~~l~~~~~~~~~~~~A~~~~~~ 330 (388)
T d1w3ba_ 297 ALRLCPTHA----------------------------------------------DSLNNLANIKREQGNIEEAVRLYRK 330 (388)
T ss_dssp HHHHCTTCH----------------------------------------------HHHHHHHHHHHTTTCHHHHHHHHHH
T ss_pred hhccCCccc----------------------------------------------hhhhHHHHHHHHCCCHHHHHHHHHH
Confidence 888877743 4667788889999999999999999
Q ss_pred Hhc--chhhhhHhhHHHHHHHhccHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHcCC
Q 012143 395 ELS--KMEECAGAGESAFLDQASAVNVAKECLLAALKADPKAAHIWANLANAYYLTGD 450 (470)
Q Consensus 395 ~~~--~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~ 450 (470)
.+. |....+++.+|.++...|++++|+.+|+++++++|+++.+|.++|.+|..+||
T Consensus 331 al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~l~P~~~~a~~~lg~~~~~~~D 388 (388)
T d1w3ba_ 331 ALEVFPEFAAAHSNLASVLQQQGKLQEALMHYKEAIRISPTFADAYSNMGNTLKEMQD 388 (388)
T ss_dssp HTTSCTTCHHHHHHHHHHHHTTTCCHHHHHHHHHHHTTCTTCHHHHHHHHHHHHHTCC
T ss_pred HHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCC
Confidence 665 66667899999999999999999999999999999999999999999999886
|
| >d1w3ba_ a.118.8.1 (A:) O-GlcNAc transferase p110 subunit, OGT {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: O-GlcNAc transferase p110 subunit, OGT species: Human (Homo sapiens) [TaxId: 9606]
Probab=100.00 E-value=6.9e-36 Score=273.27 Aligned_cols=369 Identities=15% Similarity=0.130 Sum_probs=263.7
Q ss_pred hhhcccchhhhhcChhhHHHHHHHHHHhCCCChhHHHHHHHHHHHhCChhHHHHHHHHHHHHHhhhhcccchhhhHHHHH
Q 012143 43 QSGLGTSSSSREEKVSSLKTGLVHVARKMPKNAHAHFLLGLMYQRLGQPLKAVSSYEKAEEILLRCEADIARPELLSLVQ 122 (470)
Q Consensus 43 ~~~~~~~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~ 122 (470)
++.+|.. +...|++++|++.|+++++.+|+++.++..+|.++...|++++|+..|+++++.+|... .
T Consensus 2 ll~la~~-~~~~G~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~------------~ 68 (388)
T d1w3ba_ 2 PMELAHR-EYQAGDFEAAERHCMQLWRQEPDNTGVLLLLSSIHFQCRRLDRSAHFSTLAIKQNPLLA------------E 68 (388)
T ss_dssp CCTHHHH-HHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCH------------H
T ss_pred hHHHHHH-HHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCH------------H
Confidence 4667888 99999999999999999999999999999999999999999999999999999987642 2
Q ss_pred HhhhccccccccCCCccccccCcccHHHHHHHHHHhhhcCccchHHHHHHHHHHHHcCChHHHHHHHHHHhhcCCCChHH
Q 012143 123 IHHAQCLLPESSGDNSLDKELEPEELEEILSKLKESMQSDTRQAVVWNTLGLILLKSGRLQSSISVLSSLLAVDPNNCDC 202 (470)
Q Consensus 123 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~ 202 (470)
++..+|.++ ...|++++|+..+..+....|.........+......+.+..+...........+.....
T Consensus 69 a~~~l~~~~-----------~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 137 (388)
T d1w3ba_ 69 AYSNLGNVY-----------KERGQLQEAIEHYRHALRLKPDFIDGYINLAAALVAAGDMEGAVQAYVSALQYNPDLYCV 137 (388)
T ss_dssp HHHHHHHHH-----------HHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHSCSSHHHHHHHHHHHHCTTCTHH
T ss_pred HHHHHHHHh-----------hhhccccccccccccccccccccccccccccccccccccccccccccccccccccccccc
Confidence 344444443 456778999999999999998887777776666666666666555555555555555555
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHhhCCCChHHHHHHHHHHHhhhcccccccccchhhhhHHHhcCCHHHHHHHHHHHH
Q 012143 203 IGNLGIAYFQSGDMEQSAKCFQDLILKDQNHPAALINYAALLLCKYGSVLAGAGANTGEGACLDQASAVNVAKECLLAAL 282 (470)
Q Consensus 203 ~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~ 282 (470)
....+......+....+...+.+.+...|++..++..++..+. ..|++++|...+++++
T Consensus 138 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~---------------------~~~~~~~A~~~~~~al 196 (388)
T d1w3ba_ 138 RSDLGNLLKALGRLEEAKACYLKAIETQPNFAVAWSNLGCVFN---------------------AQGEIWLAIHHFEKAV 196 (388)
T ss_dssp HHHHHHHHHTTSCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHH---------------------TTTCHHHHHHHHHHHH
T ss_pred cccccccccccchhhhhHHHHHHhhccCcchhHHHHhhccccc---------------------ccCcHHHHHHHHHHHH
Confidence 5555555555555555555555555555555555555544444 3555555555555555
Q ss_pred hcCCCCHHHHHHHHHHHHHcCChhHHHHHHHHHHhcCCCcccHHHHHHHHHHHHhhhccCchHHhhhhHHHHHHHhhcCC
Q 012143 283 KADPKAAHIWANLANAYYLTGDHRSSGKCLEKAAKLEPNCMSTRYAVAVSRIKDAERSQEPTEQLSWAGNEMASILREGD 362 (470)
Q Consensus 283 ~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~p~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 362 (470)
+.+|+++.++..+|.++...|++++|+..++++....|.....+..++...... .....+...+...+
T Consensus 197 ~~~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~--------~~~~~A~~~~~~al---- 264 (388)
T d1w3ba_ 197 TLDPNFLDAYINLGNVLKEARIFDRAVAAYLRALSLSPNHAVVHGNLACVYYEQ--------GLIDLAIDTYRRAI---- 264 (388)
T ss_dssp HHCTTCHHHHHHHHHHHHTTTCTTHHHHHHHHHHHHCTTCHHHHHHHHHHHHHT--------TCHHHHHHHHHHHH----
T ss_pred HhCcccHHHHHHHhhhhhccccHHHHHHHHHHhHHHhhhHHHHHHHHHHHHHHC--------CCHHHHHHHHHHHH----
Confidence 555555555555555555555555555555555555555544444443322211 01111111111111
Q ss_pred CCCCCcHHHHHHHHHHHhccccHHHHHHHHHHHhc--chhhhhHhhHHHHHHHhccHHHHHHHHHHHHhcCCCcHHHHHH
Q 012143 363 PVQIEPPIAWAGFAAVQKTHHEVAAAFETEENELS--KMEECAGAGESAFLDQASAVNVAKECLLAALKADPKAAHIWAN 440 (470)
Q Consensus 363 ~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~--~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~ 440 (470)
...|..+.++..+|.++...|++.+|+..+..... |.....+..+|.++...|++++|+..|+++++.+|+++.+++.
T Consensus 265 ~~~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~ 344 (388)
T d1w3ba_ 265 ELQPHFPDAYCNLANALKEKGSVAEAEDCYNTALRLCPTHADSLNNLANIKREQGNIEEAVRLYRKALEVFPEFAAAHSN 344 (388)
T ss_dssp HTCSSCHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHTTTCHHHHHHHHHHHTTSCTTCHHHHHH
T ss_pred HhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHhhhccCCccchhhhHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHH
Confidence 12334566888899999999999999999998555 5566778899999999999999999999999999999999999
Q ss_pred HHHHHHHcCChHHHHHHHHHHHHhhccC
Q 012143 441 LANAYYLTGDHRSSGKCLEKVLMVYCSS 468 (470)
Q Consensus 441 la~~~~~~g~~~~A~~~~~~al~~~~~~ 468 (470)
+|.++..+|++++|+.+|++++++.|+.
T Consensus 345 la~~~~~~g~~~~A~~~~~~al~l~P~~ 372 (388)
T d1w3ba_ 345 LASVLQQQGKLQEALMHYKEAIRISPTF 372 (388)
T ss_dssp HHHHHHTTTCCHHHHHHHHHHHTTCTTC
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHhCCCC
Confidence 9999999999999999999999988753
|
| >d1fcha_ a.118.8.1 (A:) Peroxin pex5 (peroxisomal targeting signal 1 (PTS1) receptor) {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Peroxin pex5 (peroxisomal targeting signal 1 (PTS1) receptor) species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.97 E-value=7.9e-30 Score=226.87 Aligned_cols=272 Identities=16% Similarity=0.137 Sum_probs=225.8
Q ss_pred hhhhhhhhhhhhhHHHHHHHHHHHHhcCCCCcchhhhcccchhhhhcChhhHHHHHHHHHHhCCCChhHHHHHHHHHHHh
Q 012143 9 EVEGKKINKLGKCRSRISSKMDSALEFGVDADGDQSGLGTSSSSREEKVSSLKTGLVHVARKMPKNAHAHFLLGLMYQRL 88 (470)
Q Consensus 9 ~~~~~~~~~~g~~~~a~~~~~~~~l~~~p~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~l~~~~~~~ 88 (470)
-..|..+.+.|++++|+ ..++++++.+|+++.+|+.+|.+ +...|+++.|+..|.++++.+|+++.++..+|.++...
T Consensus 23 ~~~g~~~~~~g~~~~A~-~~~~~al~~~P~~~~a~~~lg~~-~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~ 100 (323)
T d1fcha_ 23 FEEGLRRLQEGDLPNAV-LLFEAAVQQDPKHMEAWQYLGTT-QAENEQELLAISALRRCLELKPDNQTALMALAVSFTNE 100 (323)
T ss_dssp HHHHHHHHHTTCHHHHH-HHHHHHHHSCTTCHHHHHHHHHH-HHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHcCCHHHHH-HHHHHHHHhCCCCHHHHHHHHHH-HHHcCChHHHHHHHHhhhcccccccccccccccccccc
Confidence 35799999999999999 99999999999999999999999 99999999999999999999999999999999999999
Q ss_pred CChhHHHHHHHHHHHHHhhhhcccchhhhHHHHHHhhhccccccccCCCccccccCcccHHHHHHHHHHhhhcCccc--h
Q 012143 89 GQPLKAVSSYEKAEEILLRCEADIARPELLSLVQIHHAQCLLPESSGDNSLDKELEPEELEEILSKLKESMQSDTRQ--A 166 (470)
Q Consensus 89 g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~p~~--~ 166 (470)
|++++|+..+++++...|............ ......+..... .......+.+.+|+..|.+++..+|+. +
T Consensus 101 ~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~-----~~~~~~~~~~~~a~~~~~~al~~~p~~~~~ 172 (323)
T d1fcha_ 101 SLQRQACEILRDWLRYTPAYAHLVTPAEEG---AGGAGLGPSKRI-----LGSLLSDSLFLEVKELFLAAVRLDPTSIDP 172 (323)
T ss_dssp TCHHHHHHHHHHHHHTSTTTGGGCC------------------CT-----THHHHHHHHHHHHHHHHHHHHHHSTTSCCH
T ss_pred ccccccccchhhHHHhccchHHHHHhhhhh---hhhcccccchhh-----HHHHHHhhHHHHHHHHHHHHHHHhhccccc
Confidence 999999999999999877653322111110 111111111111 111345678899999999999999875 5
Q ss_pred HHHHHHHHHHHHcCChHHHHHHHHHHhhcCCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCChHHHHHHHHHHHh
Q 012143 167 VVWNTLGLILLKSGRLQSSISVLSSLLAVDPNNCDCIGNLGIAYFQSGDMEQSAKCFQDLILKDQNHPAALINYAALLLC 246 (470)
Q Consensus 167 ~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~l~~~~~~ 246 (470)
.++..+|.++...|++++|+..|++++..+|+++.++..+|.++..+|++++|+..|+++++++|+++.++..+|.++.
T Consensus 173 ~~~~~l~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~- 251 (323)
T d1fcha_ 173 DVQCGLGVLFNLSGEYDKAVDCFTAALSVRPNDYLLWNKLGATLANGNQSEEAVAAYRRALELQPGYIRSRYNLGISCI- 251 (323)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHH-
T ss_pred ccchhhHHHHHHHHHHhhhhcccccccccccccccchhhhhhcccccccchhHHHHHHHHHHHhhccHHHHHHHHHHHH-
Confidence 6788999999999999999999999999999999999999999999999999999999999999999999999998887
Q ss_pred hhcccccccccchhhhhHHHhcCCHHHHHHHHHHHHhcCCCCHHH-----------HHHHHHHHHHcCChhHHHHH
Q 012143 247 KYGSVLAGAGANTGEGACLDQASAVNVAKECLLAALKADPKAAHI-----------WANLANAYYLTGDHRSSGKC 311 (470)
Q Consensus 247 ~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~-----------~~~la~~~~~~g~~~~A~~~ 311 (470)
..|++++|+..|+++++++|++... |..++.++...|+.+.+...
T Consensus 252 --------------------~~g~~~~A~~~~~~al~l~p~~~~~~~~~~~~~~~~~~~l~~al~~~~~~d~~~~~ 307 (323)
T d1fcha_ 252 --------------------NLGAHREAVEHFLEALNMQRKSRGPRGEGGAMSENIWSTLRLALSMLGQSDAYGAA 307 (323)
T ss_dssp --------------------HHTCHHHHHHHHHHHHHHHHTC------CCCCCHHHHHHHHHHHHHHTCGGGHHHH
T ss_pred --------------------HCCCHHHHHHHHHHHHHhCCcChhhhhhhHHHHHHHHHHHHHHHHHcCCHHHHHHH
Confidence 7999999999999999998886654 45566666666666554433
|
| >d1fcha_ a.118.8.1 (A:) Peroxin pex5 (peroxisomal targeting signal 1 (PTS1) receptor) {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Peroxin pex5 (peroxisomal targeting signal 1 (PTS1) receptor) species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.97 E-value=2.4e-29 Score=223.72 Aligned_cols=250 Identities=16% Similarity=0.157 Sum_probs=149.9
Q ss_pred HHHHHHhcCCC----CcchhhhcccchhhhhcChhhHHHHHHHHHHhCCCChhHHHHHHHHHHHhCChhHHHHHHHHHHH
Q 012143 28 KMDSALEFGVD----ADGDQSGLGTSSSSREEKVSSLKTGLVHVARKMPKNAHAHFLLGLMYQRLGQPLKAVSSYEKAEE 103 (470)
Q Consensus 28 ~~~~~l~~~p~----~~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~ 103 (470)
.+++++...++ +...++..|.. +...|++++|+..|+++++.+|+++.+|+.+|.++...|++++|+..|.++++
T Consensus 3 ~~~~~~~~~~~n~~~~~~~~~~~g~~-~~~~g~~~~A~~~~~~al~~~P~~~~a~~~lg~~~~~~~~~~~A~~~~~~al~ 81 (323)
T d1fcha_ 3 TYDKGYQFEEENPLRDHPQPFEEGLR-RLQEGDLPNAVLLFEAAVQQDPKHMEAWQYLGTTQAENEQELLAISALRRCLE 81 (323)
T ss_dssp HHHCCCCCCSSCTTTTCSSHHHHHHH-HHHTTCHHHHHHHHHHHHHSCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred chHHhHhhcccCCCcchHHHHHHHHH-HHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHHHHHHhhhc
Confidence 45666655554 34567889999 99999999999999999999999999999999999999999999999999988
Q ss_pred HHhhhhcccchhhhHHHHHHhhhccccccccCCCccccccCcccHHHHHHHHHHhhhcCccchHHHH-------------
Q 012143 104 ILLRCEADIARPELLSLVQIHHAQCLLPESSGDNSLDKELEPEELEEILSKLKESMQSDTRQAVVWN------------- 170 (470)
Q Consensus 104 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~------------- 170 (470)
++|+.. ..+..++.++ ...|++++|+..+++++...|.......
T Consensus 82 ~~p~~~------------~~~~~la~~~-----------~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 138 (323)
T d1fcha_ 82 LKPDNQ------------TALMALAVSF-----------TNESLQRQACEILRDWLRYTPAYAHLVTPAEEGAGGAGLGP 138 (323)
T ss_dssp HCTTCH------------HHHHHHHHHH-----------HHTTCHHHHHHHHHHHHHTSTTTGGGCC-------------
T ss_pred cccccc------------cccccccccc-----------cccccccccccchhhHHHhccchHHHHHhhhhhhhhccccc
Confidence 755421 1222222222 2334445566666555555554322111
Q ss_pred --HHHHHHHHcCChHHHHHHHHHHhhcCCCC--hHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCChHHHHHHHHHHHh
Q 012143 171 --TLGLILLKSGRLQSSISVLSSLLAVDPNN--CDCIGNLGIAYFQSGDMEQSAKCFQDLILKDQNHPAALINYAALLLC 246 (470)
Q Consensus 171 --~l~~~~~~~~~~~~A~~~~~~a~~~~~~~--~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~l~~~~~~ 246 (470)
.....+...+.+.+|+..|.+++..+|+. +.++..+|.++...|++++|+..|++++..+|+++.++..+|.++.
T Consensus 139 ~~~~~~~~~~~~~~~~a~~~~~~al~~~p~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~- 217 (323)
T d1fcha_ 139 SKRILGSLLSDSLFLEVKELFLAAVRLDPTSIDPDVQCGLGVLFNLSGEYDKAVDCFTAALSVRPNDYLLWNKLGATLA- 217 (323)
T ss_dssp --CTTHHHHHHHHHHHHHHHHHHHHHHSTTSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHH-
T ss_pred chhhHHHHHHhhHHHHHHHHHHHHHHHhhcccccccchhhHHHHHHHHHHhhhhcccccccccccccccchhhhhhccc-
Confidence 01112223344455555555555554442 3344455555555555555555555555555555555555554444
Q ss_pred hhcccccccccchhhhhHHHhcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCChhHHHHHHHHHHhcCCCc
Q 012143 247 KYGSVLAGAGANTGEGACLDQASAVNVAKECLLAALKADPKAAHIWANLANAYYLTGDHRSSGKCLEKAAKLEPNC 322 (470)
Q Consensus 247 ~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~p~~ 322 (470)
..|++++|+.+|+++++.+|+++.++..+|.++...|++++|+..|+++++++|++
T Consensus 218 --------------------~~g~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~p~~ 273 (323)
T d1fcha_ 218 --------------------NGNQSEEAVAAYRRALELQPGYIRSRYNLGISCINLGAHREAVEHFLEALNMQRKS 273 (323)
T ss_dssp --------------------HTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHTC
T ss_pred --------------------ccccchhHHHHHHHHHHHhhccHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCcC
Confidence 45555555555555555555555555555555555555555555555555555543
|
| >d2h6fa1 a.118.6.1 (A:55-369) Protein farnesyltransferase alpha-subunit {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: Protein prenylyltransferase family: Protein prenylyltransferase domain: Protein farnesyltransferase alpha-subunit species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.94 E-value=2.9e-25 Score=194.70 Aligned_cols=163 Identities=12% Similarity=0.158 Sum_probs=140.0
Q ss_pred HHHHHHHHHHhhhcCccchHHHHHHHHHHHHcCChHHHHHHHHHHhhcCCCChHHHHHHHHHHHHcCCHHHHHHHHHHHH
Q 012143 148 LEEILSKLKESMQSDTRQAVVWNTLGLILLKSGRLQSSISVLSSLLAVDPNNCDCIGNLGIAYFQSGDMEQSAKCFQDLI 227 (470)
Q Consensus 148 ~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~l 227 (470)
+++|+..+++++..+|++..+|..+|.++..+|++++|+..++++++++|++..+|..+|.++...|++++|+..+++++
T Consensus 94 ~~eal~~~~~al~~~p~~~~a~~~~~~~~~~l~~~~eAl~~~~kal~~dp~n~~a~~~~~~~~~~~~~~~~Al~~~~~al 173 (315)
T d2h6fa1 94 LHEEMNYITAIIEEQPKNYQVWHHRRVLVEWLRDPSQELEFIADILNQDAKNYHAWQHRQWVIQEFKLWDNELQYVDQLL 173 (315)
T ss_dssp HHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCCTTHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCCTTHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHhhhhHHHHHhHHHHhhccHHHHHHHHhhhhhhhhcchHHHHHHHHHHHHHHhhHHHHHHHHHHH
Confidence 45555566666666888999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hhCCCChHHHHHHHHHHHhhhcccccccccchhhhhHHHhcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCChhH
Q 012143 228 LKDQNHPAALINYAALLLCKYGSVLAGAGANTGEGACLDQASAVNVAKECLLAALKADPKAAHIWANLANAYYLTGDHRS 307 (470)
Q Consensus 228 ~~~p~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~la~~~~~~g~~~~ 307 (470)
+++|.+..+|..++.++..... +...+.+++|+..+.++++.+|++..+|..++.++... ..++
T Consensus 174 ~~~p~n~~a~~~r~~~l~~~~~---------------~~~~~~~~~ai~~~~~al~~~P~~~~~~~~l~~ll~~~-~~~~ 237 (315)
T d2h6fa1 174 KEDVRNNSVWNQRYFVISNTTG---------------YNDRAVLEREVQYTLEMIKLVPHNESAWNYLKGILQDR-GLSK 237 (315)
T ss_dssp HHCTTCHHHHHHHHHHHHHTTC---------------SCSHHHHHHHHHHHHHHHHHSTTCHHHHHHHHHHHTTT-CGGG
T ss_pred HHCCccHHHHHHHHHHHHHccc---------------cchhhhhHHhHHHHHHHHHhCCCchHHHHHHHHHHHhc-ChHH
Confidence 9999999999999988763211 11344578999999999999999999999999986654 4688
Q ss_pred HHHHHHHHHhcCCCcccHH
Q 012143 308 SGKCLEKAAKLEPNCMSTR 326 (470)
Q Consensus 308 A~~~~~~a~~~~p~~~~~~ 326 (470)
+...+++++.+.|+....+
T Consensus 238 ~~~~~~~~~~l~~~~~~~~ 256 (315)
T d2h6fa1 238 YPNLLNQLLDLQPSHSSPY 256 (315)
T ss_dssp CHHHHHHHHHHTTTCCCHH
T ss_pred HHHHHHHHHHhCCCcCCHH
Confidence 9999999999998865543
|
| >d2h6fa1 a.118.6.1 (A:55-369) Protein farnesyltransferase alpha-subunit {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: Protein prenylyltransferase family: Protein prenylyltransferase domain: Protein farnesyltransferase alpha-subunit species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.93 E-value=1.1e-24 Score=190.95 Aligned_cols=246 Identities=11% Similarity=0.054 Sum_probs=207.6
Q ss_pred hhcCccchHHHHHHHHHHHHcCChHHHHHHHHHHhhcCCCChHHHHHHHHHHHHcC-CHHHHHHHHHHHHhhCCCChHHH
Q 012143 159 MQSDTRQAVVWNTLGLILLKSGRLQSSISVLSSLLAVDPNNCDCIGNLGIAYFQSG-DMEQSAKCFQDLILKDQNHPAAL 237 (470)
Q Consensus 159 ~~~~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~la~~~~~~g-~~~~A~~~~~~~l~~~p~~~~~~ 237 (470)
+..+|+..+++..+|.++...+.+++|+.+++++++++|++..+|..+|.++...| ++++|+..++++++.+|++..+|
T Consensus 36 I~~~p~~~~a~~~~~~~~~~~e~~~~Al~~~~~ai~lnP~~~~a~~~r~~~l~~l~~~~~eal~~~~~al~~~p~~~~a~ 115 (315)
T d2h6fa1 36 IIYSDKFRDVYDYFRAVLQRDERSERAFKLTRDAIELNAANYTVWHFRRVLLKSLQKDLHEEMNYITAIIEEQPKNYQVW 115 (315)
T ss_dssp ECCCHHHHHHHHHHHHHHHHTCCCHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHCTTCHHHH
T ss_pred cccCHHHHHHHHHHHHHHHhCCchHHHHHHHHHHHHHCCCChHHHHHHHHHHHHhCcCHHHHHHHHHHHHHHHHhhhhHH
Confidence 55678889999999999999999999999999999999999999999999999987 49999999999999999999999
Q ss_pred HHHHHHHHhhhcccccccccchhhhhHHHhcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCChhHHHHHHHHHHh
Q 012143 238 INYAALLLCKYGSVLAGAGANTGEGACLDQASAVNVAKECLLAALKADPKAAHIWANLANAYYLTGDHRSSGKCLEKAAK 317 (470)
Q Consensus 238 ~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~ 317 (470)
..+|.++. ..|++++|+..+.++++++|++..+|.++|.++...|++++|+.+|+++++
T Consensus 116 ~~~~~~~~---------------------~l~~~~eAl~~~~kal~~dp~n~~a~~~~~~~~~~~~~~~~Al~~~~~al~ 174 (315)
T d2h6fa1 116 HHRRVLVE---------------------WLRDPSQELEFIADILNQDAKNYHAWQHRQWVIQEFKLWDNELQYVDQLLK 174 (315)
T ss_dssp HHHHHHHH---------------------HHTCCTTHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCCTTHHHHHHHHHH
T ss_pred HHHhHHHH---------------------hhccHHHHHHHHhhhhhhhhcchHHHHHHHHHHHHHHhhHHHHHHHHHHHH
Confidence 99999887 799999999999999999999999999999999999999999999999999
Q ss_pred cCCCcccHHHHHHHHHHHHhhhccCchHHhhhhHHHHHHHhhcCCCCCCCcHHHHHHHHHHHhccccHHHHHHHHHHHh-
Q 012143 318 LEPNCMSTRYAVAVSRIKDAERSQEPTEQLSWAGNEMASILREGDPVQIEPPIAWAGFAAVQKTHHEVAAAFETEENEL- 396 (470)
Q Consensus 318 ~~p~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~- 396 (470)
++|.+..+|..++..... ...+...+.+++|+..+.+++
T Consensus 175 ~~p~n~~a~~~r~~~l~~----------------------------------------~~~~~~~~~~~~ai~~~~~al~ 214 (315)
T d2h6fa1 175 EDVRNNSVWNQRYFVISN----------------------------------------TTGYNDRAVLEREVQYTLEMIK 214 (315)
T ss_dssp HCTTCHHHHHHHHHHHHH----------------------------------------TTCSCSHHHHHHHHHHHHHHHH
T ss_pred HCCccHHHHHHHHHHHHH----------------------------------------ccccchhhhhHHhHHHHHHHHH
Confidence 999988777665542110 000123345678888887754
Q ss_pred -cchhhhhHhhHHHHHHHhccHHHHHHHHHHHHhcCCCc--HHHHHHHHHHHHH--cCChHHHHHHHHHHHHhhc
Q 012143 397 -SKMEECAGAGESAFLDQASAVNVAKECLLAALKADPKA--AHIWANLANAYYL--TGDHRSSGKCLEKVLMVYC 466 (470)
Q Consensus 397 -~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~p~~--~~~~~~la~~~~~--~g~~~~A~~~~~~al~~~~ 466 (470)
.|.+..+|+.++.++...+ .+++...+++++++.|+. +.++..++.+|.. .++.+.+...++++++++.
T Consensus 215 ~~P~~~~~~~~l~~ll~~~~-~~~~~~~~~~~~~l~~~~~~~~~~~~l~~~y~~~~~~~~~~~~~~~~ka~~l~~ 288 (315)
T d2h6fa1 215 LVPHNESAWNYLKGILQDRG-LSKYPNLLNQLLDLQPSHSSPYLIAFLVDIYEDMLENQCDNKEDILNKALELCE 288 (315)
T ss_dssp HSTTCHHHHHHHHHHHTTTC-GGGCHHHHHHHHHHTTTCCCHHHHHHHHHHHHHHHHTTCSSHHHHHHHHHHHHH
T ss_pred hCCCchHHHHHHHHHHHhcC-hHHHHHHHHHHHHhCCCcCCHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHH
Confidence 4666778888888766544 578889999998888764 5667778888754 4777888888888887754
|
| >d1dcea1 a.118.6.1 (A:1-241,A:351-443) Rab geranylgeranyltransferase alpha-subunit, N-terminal domain {Rat (Rattus norvegicus) [TaxId: 10116]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: Protein prenylyltransferase family: Protein prenylyltransferase domain: Rab geranylgeranyltransferase alpha-subunit, N-terminal domain species: Rat (Rattus norvegicus) [TaxId: 10116]
Probab=99.91 E-value=4.5e-24 Score=189.99 Aligned_cols=275 Identities=11% Similarity=-0.010 Sum_probs=221.8
Q ss_pred ChhhHHHHHHHHHHhCCCChhHHHHHHHHHHHhCChhHHHHHHHHHHHHHhhhhcccchhhhHHHHHHhhhccccccccC
Q 012143 56 KVSSLKTGLVHVARKMPKNAHAHFLLGLMYQRLGQPLKAVSSYEKAEEILLRCEADIARPELLSLVQIHHAQCLLPESSG 135 (470)
Q Consensus 56 ~~~~A~~~~~~~l~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 135 (470)
..++|...++++++.+|++..+|..++.++...+......
T Consensus 44 ~~~~al~~~~~~l~~~P~~~~a~~~r~~~l~~l~~~~~~~---------------------------------------- 83 (334)
T d1dcea1 44 LDESVLELTSQILGANPDFATLWNCRREVLQHLETEKSPE---------------------------------------- 83 (334)
T ss_dssp CSHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHTTSCHH----------------------------------------
T ss_pred ccHHHHHHHHHHHHHCCCcHHHHHHHHHHHHHHhhhcchH----------------------------------------
Confidence 3467888888888888888888887777765544433221
Q ss_pred CCccccccCcccHHHHHHHHHHhhhcCccchHHHHHHHHHHHHcCC--hHHHHHHHHHHhhcCCCChHHH-HHHHHHHHH
Q 012143 136 DNSLDKELEPEELEEILSKLKESMQSDTRQAVVWNTLGLILLKSGR--LQSSISVLSSLLAVDPNNCDCI-GNLGIAYFQ 212 (470)
Q Consensus 136 ~~~~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~~~--~~~A~~~~~~a~~~~~~~~~~~-~~la~~~~~ 212 (470)
...|++++|+..+++++..+|+++.+|..+|.++...++ +++|+..++++++.+|.+..++ ...|.++..
T Consensus 84 -------~~~~~~~~al~~~~~~l~~~pk~~~~~~~~~~~~~~~~~~~~~~a~~~~~~al~~~~~~~~~~~~~~~~~~~~ 156 (334)
T d1dcea1 84 -------ESAALVKAELGFLESCLRVNPKSYGTWHHRCWLLSRLPEPNWARELELCARFLEADERNFHCWDYRRFVAAQA 156 (334)
T ss_dssp -------HHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHTCSSCCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHT
T ss_pred -------HHHHHHHHHHHHHHHHHHhCCCcHHHHHHhhHHHHHhccccHHHHHHHHHHHHhhCchhhhhhhhHHHHHHHh
Confidence 233556888999999999999999999999988888765 7899999999999999988876 567788888
Q ss_pred cCCHHHHHHHHHHHHhhCCCChHHHHHHHHHHHhhhcccccccccchhhhhHHHhcCCHHHHHHHHHHHHhcCCCCHHHH
Q 012143 213 SGDMEQSAKCFQDLILKDQNHPAALINYAALLLCKYGSVLAGAGANTGEGACLDQASAVNVAKECLLAALKADPKAAHIW 292 (470)
Q Consensus 213 ~g~~~~A~~~~~~~l~~~p~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~ 292 (470)
.|.+++|+..+++++..+|.+..+|..+|.++. ..|++++|+..+.+++...|.....+
T Consensus 157 ~~~~~~Al~~~~~~i~~~p~~~~a~~~l~~~~~---------------------~~~~~~~A~~~~~~~~~~~~~~~~~~ 215 (334)
T d1dcea1 157 AVAPAEELAFTDSLITRNFSNYSSWHYRSCLLP---------------------QLHPQPDSGPQGRLPENVLLKELELV 215 (334)
T ss_dssp CCCHHHHHHHHHTTTTTTCCCHHHHHHHHHHHH---------------------HHSCCCCSSSCCSSCHHHHHHHHHHH
T ss_pred ccccHHHHHHHHHHHHcCCCCHHHHHHHHHHHH---------------------HhcCHHHHHHHHHHhHHhHHHHHHHH
Confidence 999999999999999999999999999888887 68888888888888877766554433
Q ss_pred HHHHHHHHHcCChhHHHHHHHHHHhcCCCcccHHHHHHHHHHHHhhhccCchHHhhhhHHHHHHHhhcCCCCCCCcHHHH
Q 012143 293 ANLANAYYLTGDHRSSGKCLEKAAKLEPNCMSTRYAVAVSRIKDAERSQEPTEQLSWAGNEMASILREGDPVQIEPPIAW 372 (470)
Q Consensus 293 ~~la~~~~~~g~~~~A~~~~~~a~~~~p~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 372 (470)
..+...+..+++...+.+++...|.+.. .+
T Consensus 216 ----~~~~~l~~~~~a~~~~~~~l~~~~~~~~----------------------------------------------~~ 245 (334)
T d1dcea1 216 ----QNAFFTDPNDQSAWFYHRWLLGRAEPLF----------------------------------------------RC 245 (334)
T ss_dssp ----HHHHHHCSSCSHHHHHHHHHHSCCCCSS----------------------------------------------SC
T ss_pred ----HHHHHhcchhHHHHHHHHHHHhCcchhh----------------------------------------------HH
Confidence 3456678888899999999888887653 23
Q ss_pred HHHHHHHhccccHHHHHHHHHHHhc--chhhhhHhhHHHHHHHhccHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHc
Q 012143 373 AGFAAVQKTHHEVAAAFETEENELS--KMEECAGAGESAFLDQASAVNVAKECLLAALKADPKAAHIWANLANAYYLT 448 (470)
Q Consensus 373 ~~l~~~~~~~~~~~~A~~~~~~~~~--~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~ 448 (470)
..++.++...+++.+|+..+.+.+. |....+++.+|.++...|++++|+.+|+++++++|.+...|..|+..+...
T Consensus 246 ~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~~~~~eA~~~~~~ai~ldP~~~~y~~~L~~~~~~e 323 (334)
T d1dcea1 246 ELSVEKSTVLQSELESCKELQELEPENKWCLLTIILLMRALDPLLYEKETLQYFSTLKAVDPMRAAYLDDLRSKFLLE 323 (334)
T ss_dssp CCCHHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHCTGGGHHHHHHHHHHHHHHCGGGHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhhHHHHHHHHHHHHhhCchHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCcccHHHHHHHHHHHhHh
Confidence 3455666677888899998888665 455677889999999999999999999999999999999999999888753
|
| >d1dcea1 a.118.6.1 (A:1-241,A:351-443) Rab geranylgeranyltransferase alpha-subunit, N-terminal domain {Rat (Rattus norvegicus) [TaxId: 10116]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: Protein prenylyltransferase family: Protein prenylyltransferase domain: Rab geranylgeranyltransferase alpha-subunit, N-terminal domain species: Rat (Rattus norvegicus) [TaxId: 10116]
Probab=99.91 E-value=3.7e-24 Score=190.52 Aligned_cols=249 Identities=8% Similarity=-0.087 Sum_probs=210.3
Q ss_pred HHHHHHHHHHhhhcCccchHHHHHHHHHHHHc----------CChHHHHHHHHHHhhcCCCChHHHHHHHHHHHHcCC--
Q 012143 148 LEEILSKLKESMQSDTRQAVVWNTLGLILLKS----------GRLQSSISVLSSLLAVDPNNCDCIGNLGIAYFQSGD-- 215 (470)
Q Consensus 148 ~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~----------~~~~~A~~~~~~a~~~~~~~~~~~~~la~~~~~~g~-- 215 (470)
.++|+.++++++..+|++..+|..++.++... |++.+|+.+++++++.+|+++.+|..+|.++...++
T Consensus 45 ~~~al~~~~~~l~~~P~~~~a~~~r~~~l~~l~~~~~~~~~~~~~~~al~~~~~~l~~~pk~~~~~~~~~~~~~~~~~~~ 124 (334)
T d1dcea1 45 DESVLELTSQILGANPDFATLWNCRREVLQHLETEKSPEESAALVKAELGFLESCLRVNPKSYGTWHHRCWLLSRLPEPN 124 (334)
T ss_dssp SHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHTTSCHHHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHTCSSCC
T ss_pred cHHHHHHHHHHHHHCCCcHHHHHHHHHHHHHHhhhcchHHHHHHHHHHHHHHHHHHHhCCCcHHHHHHhhHHHHHhcccc
Confidence 48999999999999999999998877776654 447899999999999999999999999999888765
Q ss_pred HHHHHHHHHHHHhhCCCChHHHH-HHHHHHHhhhcccccccccchhhhhHHHhcCCHHHHHHHHHHHHhcCCCCHHHHHH
Q 012143 216 MEQSAKCFQDLILKDQNHPAALI-NYAALLLCKYGSVLAGAGANTGEGACLDQASAVNVAKECLLAALKADPKAAHIWAN 294 (470)
Q Consensus 216 ~~~A~~~~~~~l~~~p~~~~~~~-~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~ 294 (470)
+++|+..+++++..+|.+..++. ..+.++. ..+.+++|+.++++++..+|.+..+|..
T Consensus 125 ~~~a~~~~~~al~~~~~~~~~~~~~~~~~~~---------------------~~~~~~~Al~~~~~~i~~~p~~~~a~~~ 183 (334)
T d1dcea1 125 WARELELCARFLEADERNFHCWDYRRFVAAQ---------------------AAVAPAEELAFTDSLITRNFSNYSSWHY 183 (334)
T ss_dssp HHHHHHHHHHHHHHCTTCHHHHHHHHHHHHH---------------------TCCCHHHHHHHHHTTTTTTCCCHHHHHH
T ss_pred HHHHHHHHHHHHhhCchhhhhhhhHHHHHHH---------------------hccccHHHHHHHHHHHHcCCCCHHHHHH
Confidence 89999999999999999988865 4445554 6899999999999999999999999999
Q ss_pred HHHHHHHcCChhHHHHHHHHHHhcCCCcccHHHHHHHHHHHHhhhccCchHHhhhhHHHHHHHhhcCCCCCCCcHHHHHH
Q 012143 295 LANAYYLTGDHRSSGKCLEKAAKLEPNCMSTRYAVAVSRIKDAERSQEPTEQLSWAGNEMASILREGDPVQIEPPIAWAG 374 (470)
Q Consensus 295 la~~~~~~g~~~~A~~~~~~a~~~~p~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 374 (470)
+|.++...|++++|+..+++++...|.......
T Consensus 184 l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~----------------------------------------------- 216 (334)
T d1dcea1 184 RSCLLPQLHPQPDSGPQGRLPENVLLKELELVQ----------------------------------------------- 216 (334)
T ss_dssp HHHHHHHHSCCCCSSSCCSSCHHHHHHHHHHHH-----------------------------------------------
T ss_pred HHHHHHHhcCHHHHHHHHHHhHHhHHHHHHHHH-----------------------------------------------
Confidence 999999999999998888877777665332111
Q ss_pred HHHHHhccccHHHHHHHHHHH--hcchhhhhHhhHHHHHHHhccHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHcCChH
Q 012143 375 FAAVQKTHHEVAAAFETEENE--LSKMEECAGAGESAFLDQASAVNVAKECLLAALKADPKAAHIWANLANAYYLTGDHR 452 (470)
Q Consensus 375 l~~~~~~~~~~~~A~~~~~~~--~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~ 452 (470)
.+...+...++...+... ..+.....+..+|.++...+++.+|+..+.+++..+|++..++..+|.++...|+++
T Consensus 217 ---~~~~l~~~~~a~~~~~~~l~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~~~~~ 293 (334)
T d1dcea1 217 ---NAFFTDPNDQSAWFYHRWLLGRAEPLFRCELSVEKSTVLQSELESCKELQELEPENKWCLLTIILLMRALDPLLYEK 293 (334)
T ss_dssp ---HHHHHCSSCSHHHHHHHHHHSCCCCSSSCCCCHHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHCTGGGHH
T ss_pred ---HHHHhcchhHHHHHHHHHHHhCcchhhHHHHHHHHHHHHhhHHHHHHHHHHHHhhCchHHHHHHHHHHHHHHCCCHH
Confidence 112223334455555553 345566778899999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHhhcc
Q 012143 453 SSGKCLEKVLMVYCS 467 (470)
Q Consensus 453 ~A~~~~~~al~~~~~ 467 (470)
+|+.+|++++++-|.
T Consensus 294 eA~~~~~~ai~ldP~ 308 (334)
T d1dcea1 294 ETLQYFSTLKAVDPM 308 (334)
T ss_dssp HHHHHHHHHHHHCGG
T ss_pred HHHHHHHHHHHHCcc
Confidence 999999999999874
|
| >d1xnfa_ a.118.8.1 (A:) Lipoprotein NlpI {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Lipoprotein NlpI species: Escherichia coli [TaxId: 562]
Probab=99.90 E-value=6.6e-22 Score=169.25 Aligned_cols=228 Identities=15% Similarity=0.134 Sum_probs=178.9
Q ss_pred cCcccHHHHHHHHHHhhhc----CccchHHHHHHHHHHHHcCChHHHHHHHHHHhhcCCCChHHHHHHHHHHHHcCCHHH
Q 012143 143 LEPEELEEILSKLKESMQS----DTRQAVVWNTLGLILLKSGRLQSSISVLSSLLAVDPNNCDCIGNLGIAYFQSGDMEQ 218 (470)
Q Consensus 143 ~~~~~~~~A~~~~~~~~~~----~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~la~~~~~~g~~~~ 218 (470)
....+.+.|+..+++++.. +|..+.+++.+|.+|...|++++|+..|+++++++|+++.++..+|.++..+|++++
T Consensus 10 ~~~~~~e~al~~~~e~l~~~~~~~~~~a~~~~~~G~~y~~~g~~~~A~~~~~~al~l~p~~~~a~~~lg~~~~~~g~~~~ 89 (259)
T d1xnfa_ 10 QPTLQQEVILARMEQILASRALTDDERAQLLYERGVLYDSLGLRALARNDFSQALAIRPDMPEVFNYLGIYLTQAGNFDA 89 (259)
T ss_dssp CCCHHHHHHHHHHHHHHTSSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHTTCHHH
T ss_pred cccHHHHHHHHHHHHHHHhhhcCCHHHHHHHHHHHHHHHHCCCHHHHHHHHHHhhccCCCCHHHHhhhchHHHHHHHHHH
Confidence 3556778899999998864 445677999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHhhCCCChHHHHHHHHHHHhhhcccccccccchhhhhHHHhcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHH
Q 012143 219 SAKCFQDLILKDQNHPAALINYAALLLCKYGSVLAGAGANTGEGACLDQASAVNVAKECLLAALKADPKAAHIWANLANA 298 (470)
Q Consensus 219 A~~~~~~~l~~~p~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~la~~ 298 (470)
|+..|+++++++|+++.++..+|.++. ..|++++|+..|+++++.+|.+......++.+
T Consensus 90 A~~~~~~al~~~p~~~~a~~~lg~~~~---------------------~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~ 148 (259)
T d1xnfa_ 90 AYEAFDSVLELDPTYNYAHLNRGIALY---------------------YGGRDKLAQDDLLAFYQDDPNDPFRSLWLYLA 148 (259)
T ss_dssp HHHHHHHHHHHCTTCTHHHHHHHHHHH---------------------HTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHH
T ss_pred hhhhhhHHHHHHhhhhhhHHHHHHHHH---------------------HHhhHHHHHHHHHHHHhhccccHHHHHHHHHH
Confidence 999999999999999999999998887 69999999999999999999999999999988
Q ss_pred HHHcCChhHHHHHHHHHHhcCCCcccHHHHHHHHHHHHhhhccCchHHhhhhHHHHHHHhhcCCCCCCCcHHHHHHHHHH
Q 012143 299 YYLTGDHRSSGKCLEKAAKLEPNCMSTRYAVAVSRIKDAERSQEPTEQLSWAGNEMASILREGDPVQIEPPIAWAGFAAV 378 (470)
Q Consensus 299 ~~~~g~~~~A~~~~~~a~~~~p~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~ 378 (470)
+...+..+.+...........+.... ..+....+..
T Consensus 149 ~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~------------------------------------------ 184 (259)
T d1xnfa_ 149 EQKLDEKQAKEVLKQHFEKSDKEQWG--WNIVEFYLGN------------------------------------------ 184 (259)
T ss_dssp HHHHCHHHHHHHHHHHHHHSCCCSTH--HHHHHHHTTS------------------------------------------
T ss_pred HHHhhhHHHHHHHHHHhhccchhhhh--hhHHHHHHHH------------------------------------------
Confidence 88888777766666666555544321 1111000000
Q ss_pred HhccccHHHHHHHHHH--HhcchhhhhHhhHHHHHHHhccHHHHHHHHHHHHhcCCCcH
Q 012143 379 QKTHHEVAAAFETEEN--ELSKMEECAGAGESAFLDQASAVNVAKECLLAALKADPKAA 435 (470)
Q Consensus 379 ~~~~~~~~~A~~~~~~--~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~p~~~ 435 (470)
....+....+...+.. ...+....+++.+|.++...|++++|+.+|++++..+|++.
T Consensus 185 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~ 243 (259)
T d1xnfa_ 185 ISEQTLMERLKADATDNTSLAEHLSETNFYLGKYYLSLGDLDSATALFKLAVANNVHNF 243 (259)
T ss_dssp SCHHHHHHHHHHHCCSHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCCTTC
T ss_pred HHHHHHHHHHHHHHHHhhhcCcccHHHHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCCH
Confidence 0001112222222111 22344556788899999999999999999999999999874
|
| >d1xnfa_ a.118.8.1 (A:) Lipoprotein NlpI {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Lipoprotein NlpI species: Escherichia coli [TaxId: 562]
Probab=99.89 E-value=2.7e-22 Score=171.66 Aligned_cols=159 Identities=14% Similarity=0.066 Sum_probs=118.8
Q ss_pred HHHHHHHHHHhhhcCccchHHHHHHHHHHHHcCChHHHHHHHHHHhhcCCCChHHHHHHHHHHHHcCCHHHHHHHHHHHH
Q 012143 148 LEEILSKLKESMQSDTRQAVVWNTLGLILLKSGRLQSSISVLSSLLAVDPNNCDCIGNLGIAYFQSGDMEQSAKCFQDLI 227 (470)
Q Consensus 148 ~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~l 227 (470)
+++|+..|++++..+|+++.++..+|.++..+|++++|+..|+++++.+|.+......++.++...+..+.+........
T Consensus 87 ~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 166 (259)
T d1xnfa_ 87 FDAAYEAFDSVLELDPTYNYAHLNRGIALYYGGRDKLAQDDLLAFYQDDPNDPFRSLWLYLAEQKLDEKQAKEVLKQHFE 166 (259)
T ss_dssp HHHHHHHHHHHHHHCTTCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHCHHHHHHHHHHHHH
T ss_pred HHHhhhhhhHHHHHHhhhhhhHHHHHHHHHHHhhHHHHHHHHHHHHhhccccHHHHHHHHHHHHHhhhHHHHHHHHHHhh
Confidence 34444444444555778888999999999999999999999999999999999888888888888887776666666665
Q ss_pred hhCCCChHHHHHHHHHHHhhhcccccccccchhhhhHHHhcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCChhH
Q 012143 228 LKDQNHPAALINYAALLLCKYGSVLAGAGANTGEGACLDQASAVNVAKECLLAALKADPKAAHIWANLANAYYLTGDHRS 307 (470)
Q Consensus 228 ~~~p~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~la~~~~~~g~~~~ 307 (470)
...+..... .+...+... ....+....+...+.......|....+++.+|.++..+|++++
T Consensus 167 ~~~~~~~~~--~~~~~~~~~-----------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~ 227 (259)
T d1xnfa_ 167 KSDKEQWGW--NIVEFYLGN-----------------ISEQTLMERLKADATDNTSLAEHLSETNFYLGKYYLSLGDLDS 227 (259)
T ss_dssp HSCCCSTHH--HHHHHHTTS-----------------SCHHHHHHHHHHHCCSHHHHHHHHHHHHHHHHHHHHHTTCHHH
T ss_pred ccchhhhhh--hHHHHHHHH-----------------HHHHHHHHHHHHHHHHhhhcCcccHHHHHHHHHHHHHCCCHHH
Confidence 555544321 122222110 0123446666677777777778888999999999999999999
Q ss_pred HHHHHHHHHhcCCCcccH
Q 012143 308 SGKCLEKAAKLEPNCMST 325 (470)
Q Consensus 308 A~~~~~~a~~~~p~~~~~ 325 (470)
|+.+|++++..+|++...
T Consensus 228 A~~~~~~al~~~p~~~~~ 245 (259)
T d1xnfa_ 228 ATALFKLAVANNVHNFVE 245 (259)
T ss_dssp HHHHHHHHHTTCCTTCHH
T ss_pred HHHHHHHHHHcCCCCHHH
Confidence 999999999999987543
|
| >d1hz4a_ a.118.8.2 (A:) Transcription factor MalT domain III {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Transcription factor MalT domain III domain: Transcription factor MalT domain III species: Escherichia coli [TaxId: 562]
Probab=99.89 E-value=6.7e-21 Score=171.19 Aligned_cols=292 Identities=11% Similarity=-0.007 Sum_probs=219.8
Q ss_pred cCccchHHHHHHHHHHHHcCChHHHHHHHHHHhhcCCCCh-----HHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCChH
Q 012143 161 SDTRQAVVWNTLGLILLKSGRLQSSISVLSSLLAVDPNNC-----DCIGNLGIAYFQSGDMEQSAKCFQDLILKDQNHPA 235 (470)
Q Consensus 161 ~~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~-----~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~ 235 (470)
.++.+++.....|.++...|++++|+..++++++..|++. .++..+|.++...|++++|+..|++++...|....
T Consensus 7 ~~~~~ae~~~lrA~~~~~~g~~~~A~~~~~~aL~~~~~~~~~~~~~a~~~lg~~~~~~g~~~~A~~~~~~a~~~~~~~~~ 86 (366)
T d1hz4a_ 7 EDTMHAEFNALRAQVAINDGNPDEAERLAKLALEELPPGWFYSRIVATSVLGEVLHCKGELTRSLALMQQTEQMARQHDV 86 (366)
T ss_dssp HHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTCCTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTC
T ss_pred ccchhHHHHHHHHHHHHHCCCHHHHHHHHHHHHhhCcCCCcHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhhcc
Confidence 3445577888899999999999999999999999999864 47888999999999999999999999987665433
Q ss_pred HHHHHHHHHHhhhcccccccccchhhhhHHHhcCCHHHHHHHHHHHHhcCCC--------CHHHHHHHHHHHHHcCChhH
Q 012143 236 ALINYAALLLCKYGSVLAGAGANTGEGACLDQASAVNVAKECLLAALKADPK--------AAHIWANLANAYYLTGDHRS 307 (470)
Q Consensus 236 ~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~p~--------~~~~~~~la~~~~~~g~~~~ 307 (470)
......... .++.++...|++..|...+.+++...+. ....+..+|.++...|+++.
T Consensus 87 ~~~~~~~~~---------------~~~~~~~~~~~~~~a~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~ 151 (366)
T d1hz4a_ 87 WHYALWSLI---------------QQSEILFAQGFLQTAWETQEKAFQLINEQHLEQLPMHEFLVRIRAQLLWAWARLDE 151 (366)
T ss_dssp HHHHHHHHH---------------HHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCTTSTHHHHHHHHHHHHHHHTTCHHH
T ss_pred hHHHHHHHH---------------HHHHHHHHHHHHHHHHHHHHHHHHHhHhcccchhhHHHHHHHHHHHHHHHhcchhh
Confidence 322222111 1355666899999999999999875322 34567889999999999999
Q ss_pred HHHHHHHHHhcCCCcccHHHHHHHHHHHHhhhccCchHHhhhhHHHHHHHhhcCCCCCCCcHHHHHHHHHHHhccccHHH
Q 012143 308 SGKCLEKAAKLEPNCMSTRYAVAVSRIKDAERSQEPTEQLSWAGNEMASILREGDPVQIEPPIAWAGFAAVQKTHHEVAA 387 (470)
Q Consensus 308 A~~~~~~a~~~~p~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~ 387 (470)
|...+.+++...+.........+...................................+....++...+.++...|++++
T Consensus 152 a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 231 (366)
T d1hz4a_ 152 AEASARSGIEVLSSYQPQQQLQCLAMLIQCSLARGDLDNARSQLNRLENLLGNGKYHSDWISNANKVRVIYWQMTGDKAA 231 (366)
T ss_dssp HHHHHHHHHHHTTTSCGGGGHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHTTSCCCHHHHHHHHHHHHHHHHHTTCHHH
T ss_pred hHHHHHHHHHHhhhhhhhhHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHhcccCchHHHHHHHHHHHHHhcccHHH
Confidence 99999999988776544333333222222222222233333333344444444444444456678889999999999999
Q ss_pred HHHHHHHHhcch------hhhhHhhHHHHHHHhccHHHHHHHHHHHHh------cCCCcHHHHHHHHHHHHHcCChHHHH
Q 012143 388 AFETEENELSKM------EECAGAGESAFLDQASAVNVAKECLLAALK------ADPKAAHIWANLANAYYLTGDHRSSG 455 (470)
Q Consensus 388 A~~~~~~~~~~~------~~~~~~~l~~~~~~~~~~~~A~~~~~~al~------~~p~~~~~~~~la~~~~~~g~~~~A~ 455 (470)
|...+...+... ....+..+|.++...|++++|+..+++++. ..|....++..+|.+|...|++++|+
T Consensus 232 a~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~ 311 (366)
T d1hz4a_ 232 AANWLRHTAKPEFANNHFLQGQWRNIARAQILLGEFEPAEIVLEELNENARSLRLMSDLNRNLLLLNQLYWQAGRKSDAQ 311 (366)
T ss_dssp HHHHHHHSCCCCCTTCGGGHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHH
T ss_pred HHHHHHHHHHhccccchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhhcccChHHHHHHHHHHHHHHHCCCHHHHH
Confidence 999999865522 224466789999999999999999999985 34566789999999999999999999
Q ss_pred HHHHHHHHhhcc
Q 012143 456 KCLEKVLMVYCS 467 (470)
Q Consensus 456 ~~~~~al~~~~~ 467 (470)
+.|++++++.+.
T Consensus 312 ~~l~~Al~l~~~ 323 (366)
T d1hz4a_ 312 RVLLDALKLANR 323 (366)
T ss_dssp HHHHHHHHHHHH
T ss_pred HHHHHHHHHhhh
Confidence 999999998754
|
| >d1hz4a_ a.118.8.2 (A:) Transcription factor MalT domain III {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Transcription factor MalT domain III domain: Transcription factor MalT domain III species: Escherichia coli [TaxId: 562]
Probab=99.87 E-value=8.8e-20 Score=163.75 Aligned_cols=307 Identities=12% Similarity=-0.015 Sum_probs=223.1
Q ss_pred chhhhcccchhhhhcChhhHHHHHHHHHHhCCCCh-----hHHHHHHHHHHHhCChhHHHHHHHHHHHHHhhhhcccchh
Q 012143 41 GDQSGLGTSSSSREEKVSSLKTGLVHVARKMPKNA-----HAHFLLGLMYQRLGQPLKAVSSYEKAEEILLRCEADIARP 115 (470)
Q Consensus 41 ~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~p~~~-----~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~ 115 (470)
+.....|.+ ....|++++|+..++++++..|++. .++..+|.++...|++++|+..|+++++..+....
T Consensus 13 e~~~lrA~~-~~~~g~~~~A~~~~~~aL~~~~~~~~~~~~~a~~~lg~~~~~~g~~~~A~~~~~~a~~~~~~~~~----- 86 (366)
T d1hz4a_ 13 EFNALRAQV-AINDGNPDEAERLAKLALEELPPGWFYSRIVATSVLGEVLHCKGELTRSLALMQQTEQMARQHDV----- 86 (366)
T ss_dssp HHHHHHHHH-HHHTTCHHHHHHHHHHHHHTCCTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTC-----
T ss_pred HHHHHHHHH-HHHCCCHHHHHHHHHHHHhhCcCCCcHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhhcc-----
Confidence 344556777 8888888888888888888888763 46777888888888888888888888877543210
Q ss_pred hhHHHHHHhhhccccccccCCCccccccCcccHHHHHHHHHHhhhcCccchHHHHHHHHHHHHcCChHHHHHHHHHHhhc
Q 012143 116 ELLSLVQIHHAQCLLPESSGDNSLDKELEPEELEEILSKLKESMQSDTRQAVVWNTLGLILLKSGRLQSSISVLSSLLAV 195 (470)
Q Consensus 116 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~ 195 (470)
.+....++..++.++...|++..|...+.+++..
T Consensus 87 ----------------------------------------------~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~al~~ 120 (366)
T d1hz4a_ 87 ----------------------------------------------WHYALWSLIQQSEILFAQGFLQTAWETQEKAFQL 120 (366)
T ss_dssp ----------------------------------------------HHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred ----------------------------------------------hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 1122345667788888888888888888888765
Q ss_pred CC--------CChHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCChHHHHHHHHHHHhhhcccccccccchhhhhHHHh
Q 012143 196 DP--------NNCDCIGNLGIAYFQSGDMEQSAKCFQDLILKDQNHPAALINYAALLLCKYGSVLAGAGANTGEGACLDQ 267 (470)
Q Consensus 196 ~~--------~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~ 267 (470)
.+ .....+..+|.++...|+++.|...+.+++...+.........+... .+..+..
T Consensus 121 ~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~----------------~~~~~~~ 184 (366)
T d1hz4a_ 121 INEQHLEQLPMHEFLVRIRAQLLWAWARLDEAEASARSGIEVLSSYQPQQQLQCLAM----------------LIQCSLA 184 (366)
T ss_dssp HHHTTCTTSTHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTTTSCGGGGHHHHHH----------------HHHHHHH
T ss_pred hHhcccchhhHHHHHHHHHHHHHHHhcchhhhHHHHHHHHHHhhhhhhhhHHHHHHH----------------HHHHHHh
Confidence 22 12346677888889999999999999888877665433222111111 2344457
Q ss_pred cCCHHHHHHHHHHHHhcCCC-------CHHHHHHHHHHHHHcCChhHHHHHHHHHHhcCCCcccHHHHHHHHHHHHhhhc
Q 012143 268 ASAVNVAKECLLAALKADPK-------AAHIWANLANAYYLTGDHRSSGKCLEKAAKLEPNCMSTRYAVAVSRIKDAERS 340 (470)
Q Consensus 268 ~~~~~~A~~~~~~~~~~~p~-------~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~p~~~~~~~~l~~~~~~~~~~~ 340 (470)
.+++.++...+.++....+. ...++..++.++...|++++|...+++++...|.+...
T Consensus 185 ~~~~~~a~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~--------------- 249 (366)
T d1hz4a_ 185 RGDLDNARSQLNRLENLLGNGKYHSDWISNANKVRVIYWQMTGDKAAAANWLRHTAKPEFANNHF--------------- 249 (366)
T ss_dssp HTCHHHHHHHHHHHHHHHTTSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHSCCCCCTTCGG---------------
T ss_pred hhhHHHHHHHHHHHHHHHHHhcccCchHHHHHHHHHHHHHhcccHHHHHHHHHHHHHhccccchH---------------
Confidence 88888888888887765432 34567788889999999999999999988887764421
Q ss_pred cCchHHhhhhHHHHHHHhhcCCCCCCCcHHHHHHHHHHHhccccHHHHHHHHHHHhc--------chhhhhHhhHHHHHH
Q 012143 341 QEPTEQLSWAGNEMASILREGDPVQIEPPIAWAGFAAVQKTHHEVAAAFETEENELS--------KMEECAGAGESAFLD 412 (470)
Q Consensus 341 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~--------~~~~~~~~~l~~~~~ 412 (470)
....+..+|.++...|++++|+..+.+.+. +....++..+|.++.
T Consensus 250 ---------------------------~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~ 302 (366)
T d1hz4a_ 250 ---------------------------LQGQWRNIARAQILLGEFEPAEIVLEELNENARSLRLMSDLNRNLLLLNQLYW 302 (366)
T ss_dssp ---------------------------GHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHH
T ss_pred ---------------------------HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhhcccChHHHHHHHHHHHHHH
Confidence 123566788889999999999998887542 334467889999999
Q ss_pred HhccHHHHHHHHHHHHhcCCC---------cHHHHHHHHHHHHHcCChHHHHHH
Q 012143 413 QASAVNVAKECLLAALKADPK---------AAHIWANLANAYYLTGDHRSSGKC 457 (470)
Q Consensus 413 ~~~~~~~A~~~~~~al~~~p~---------~~~~~~~la~~~~~~g~~~~A~~~ 457 (470)
..|++++|+..+++++++.+. ....+..+...+...++.+++...
T Consensus 303 ~~g~~~~A~~~l~~Al~l~~~~~~~~~~~~~~~~~~~~~~~l~~~~~l~e~e~~ 356 (366)
T d1hz4a_ 303 QAGRKSDAQRVLLDALKLANRTGFISHFVIEGEAMAQQLRQLIQLNTLPELEQH 356 (366)
T ss_dssp HHTCHHHHHHHHHHHHHHHHHHCCCHHHHTTHHHHHHHHHHHHHTTCSCHHHHH
T ss_pred HCCCHHHHHHHHHHHHHHhhhcCcHHHHHHHHHHHHHHHHHHHhcCCChHHHHH
Confidence 999999999999999987543 233455566666777888888664
|
| >d1elwa_ a.118.8.1 (A:) Hop {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Hop species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.75 E-value=3.5e-17 Score=119.79 Aligned_cols=110 Identities=19% Similarity=0.181 Sum_probs=86.6
Q ss_pred HHHHHHHHHHcCChHHHHHHHHHHhhcCCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCChHHHHHHHHHHHhhh
Q 012143 169 WNTLGLILLKSGRLQSSISVLSSLLAVDPNNCDCIGNLGIAYFQSGDMEQSAKCFQDLILKDQNHPAALINYAALLLCKY 248 (470)
Q Consensus 169 ~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~l~~~~~~~~ 248 (470)
+...|..++..|++++|+.+|+++++.+|+++.+|..+|.++..+|++++|+..+.++++++|+++.+++.+|.++.
T Consensus 6 l~~~g~~~~~~g~~~eAi~~~~~al~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~g~~~~--- 82 (117)
T d1elwa_ 6 LKEKGNKALSVGNIDDALQCYSEAIKLDPHNHVLYSNRSAAYAKKGDYQKAYEDGCKTVDLKPDWGKGYSRKAAALE--- 82 (117)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHH---
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHhcCCcchhhhhcccccccccccccccchhhhhHHHhccchhhHHHHHHHHHH---
Confidence 45677778888888888888888888888888888888888888888888888888888888888887777777776
Q ss_pred cccccccccchhhhhHHHhcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHH
Q 012143 249 GSVLAGAGANTGEGACLDQASAVNVAKECLLAALKADPKAAHIWANLANAY 299 (470)
Q Consensus 249 ~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~la~~~ 299 (470)
..|++++|+..|+++++.+|+++.++..++.+.
T Consensus 83 ------------------~~~~~~~A~~~~~~a~~~~p~~~~~~~~l~~l~ 115 (117)
T d1elwa_ 83 ------------------FLNRFEEAKRTYEEGLKHEANNPQLKEGLQNME 115 (117)
T ss_dssp ------------------HTTCHHHHHHHHHHHHTTCTTCHHHHHHHHHHH
T ss_pred ------------------HccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHh
Confidence 577888888888888888888877777777654
|
| >d1ya0a1 a.118.8.1 (A:1-497) SMG-7 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: SMG-7 species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.74 E-value=2.8e-18 Score=159.69 Aligned_cols=232 Identities=12% Similarity=0.018 Sum_probs=154.9
Q ss_pred HHHHHHHHHHHhcCCCCcchhhhcccchhhhhcChhhHHHHHHHHHHhCCCChhHHHHHHHHHHHhCChhHHHHHHHHHH
Q 012143 23 SRISSKMDSALEFGVDADGDQSGLGTSSSSREEKVSSLKTGLVHVARKMPKNAHAHFLLGLMYQRLGQPLKAVSSYEKAE 102 (470)
Q Consensus 23 ~a~~~~~~~~l~~~p~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al 102 (470)
+|+ +.+++++++.|+.+.+++.+|.+ +...+++.+| |++++..+|+.+.++...+.+. ...+..+++.+++..
T Consensus 4 eA~-q~~~qA~~l~p~~a~a~~~la~~-~~~~~~l~ea---ye~~i~~dp~~a~~~~~e~~Lw--~~~y~~~ie~~r~~~ 76 (497)
T d1ya0a1 4 QSA-QYLRQAEVLKADMTDSKLGPAEV-WTSRQALQDL---YQKMLVTDLEYALDKKVEQDLW--NHAFKNQITTLQGQA 76 (497)
T ss_dssp HHH-HHHHHHHHHHGGGTCSSSCSSSS-HHHHHHHHHH---HHHHHHHCHHHHHHHTHHHHHH--HHHTHHHHHHHHHHH
T ss_pred HHH-HHHHHHHHcCCCCHHHHhhHHHH-HHHHchHHHH---HHHHHHcChhhHHHHhHHHHHH--HHHHHHHHHHHHHhc
Confidence 567 89999999999999999999999 9999999865 8999999998777654433332 233667777777766
Q ss_pred HHHhhhhcccchhhhHHHHHHhhhccccccccCCCccccccCcccHHHHHHHHHHhhhcCccchHHHHHHHHHHHHcCCh
Q 012143 103 EILLRCEADIARPELLSLVQIHHAQCLLPESSGDNSLDKELEPEELEEILSKLKESMQSDTRQAVVWNTLGLILLKSGRL 182 (470)
Q Consensus 103 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~~~~ 182 (470)
+....+.. ...... . .+.+ ....+.|+.|+..+.+++..+|.+...+..+|..+...|++
T Consensus 77 k~~~~~~~----~~~~~~---~--~~~l-----------~~a~~~Y~~ai~~l~~~~~l~~~~~~~~~~lg~~~~~~~~~ 136 (497)
T d1ya0a1 77 KNRANPNR----SEVQAN---L--SLFL-----------EAASGFYTQLLQELCTVFNVDLPCRVKSSQLGIISNKQTHT 136 (497)
T ss_dssp SCSSCTTT----THHHHH---H--HHHH-----------HHHHHHHHHHHHHHTC-------------------------
T ss_pred ccccCccH----HHHHHH---H--HHHH-----------HHHHHHHHHHHHHHHHHHCCChhhHHHHHHhHHHHHhCCCH
Confidence 53221111 111000 0 0000 12346678888888888889999999999999999999999
Q ss_pred HHHHHHHHHHhhcCCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCChHHHHHHHHHHHhhhcccccccccchhhh
Q 012143 183 QSSISVLSSLLAVDPNNCDCIGNLGIAYFQSGDMEQSAKCFQDLILKDQNHPAALINYAALLLCKYGSVLAGAGANTGEG 262 (470)
Q Consensus 183 ~~A~~~~~~a~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~ 262 (470)
++|+..+++++..+| ..++..+|.++...|++++|+.+|++++.++|++...++.+|.++.
T Consensus 137 ~~A~~~~~~al~~~~--~~~~~~LG~l~~~~~~~~~A~~~y~~A~~l~P~~~~~~~~Lg~~~~----------------- 197 (497)
T d1ya0a1 137 SAIVKPQSSSCSYIC--QHCLVHLGDIARYRNQTSQAESYYRHAAQLVPSNGQPYNQLAILAS----------------- 197 (497)
T ss_dssp ------CCHHHHHHH--HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTBSHHHHHHHHHHH-----------------
T ss_pred HHHHHHHHHHhCCCH--HHHHHHHHHHHHHcccHHHHHHHHHHHHHHCCCchHHHHHHHHHHH-----------------
Confidence 999999999888765 4688899999999999999999999999999999999999998887
Q ss_pred hHHHhcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCC
Q 012143 263 ACLDQASAVNVAKECLLAALKADPKAAHIWANLANAYYLTGD 304 (470)
Q Consensus 263 ~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~la~~~~~~g~ 304 (470)
..|++.+|+.+|.+++...|..+.++.+|+.++....+
T Consensus 198 ----~~~~~~~A~~~y~ral~~~~~~~~a~~nL~~~~~~~~~ 235 (497)
T d1ya0a1 198 ----SKGDHLTTIFYYCRSIAVKFPFPAASTNLQKALSKALE 235 (497)
T ss_dssp ----HTTCHHHHHHHHHHHHSSSBCCHHHHHHHHHHHHHHTT
T ss_pred ----HcCCHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHhhh
Confidence 68999999999999999999999999999988876543
|
| >d2onda1 a.118.8.7 (A:242-549) Cleavage stimulation factor 77 kDa subunit CSTF3 {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: HAT/Suf repeat domain: Cleavage stimulation factor 77 kDa subunit CSTF3 species: Mouse (Mus musculus) [TaxId: 10090]
Probab=99.74 E-value=7.7e-16 Score=134.21 Aligned_cols=222 Identities=13% Similarity=0.113 Sum_probs=174.6
Q ss_pred cHHHHHHHHHHhhhcCccchHHHHHHHHHHHHc--------------CChHHHHHHHHHHhhc-CCCChHHHHHHHHHHH
Q 012143 147 ELEEILSKLKESMQSDTRQAVVWNTLGLILLKS--------------GRLQSSISVLSSLLAV-DPNNCDCIGNLGIAYF 211 (470)
Q Consensus 147 ~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~--------------~~~~~A~~~~~~a~~~-~~~~~~~~~~la~~~~ 211 (470)
..+.+..+|++++...|.++.+|...+..+... +..++|...|+++++. .|.+...|..++.+..
T Consensus 31 ~~~Rv~~vyerAl~~~~~~~~lW~~y~~~~~~~~~~~~~~~~~~~~~~~~~~a~~i~~ral~~~~p~~~~l~~~ya~~~~ 110 (308)
T d2onda1 31 ITKRVMFAYEQCLLVLGHHPDIWYEAAQYLEQSSKLLAEKGDMNNAKLFSDEAANIYERAISTLLKKNMLLYFAYADYEE 110 (308)
T ss_dssp HHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHTSCCHHHHHHHHHHHHHHHHHHTTTTTTCHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHcCchHHHHHHHhhcccchHHHHHHHHHHHHHcCCCCHHHHHHHHHHHH
Confidence 356788899999999999999999887765433 3457899999999974 7888889999999999
Q ss_pred HcCCHHHHHHHHHHHHhhCCCChH-HHHHHHHHHHhhhcccccccccchhhhhHHHhcCCHHHHHHHHHHHHhcCCCCHH
Q 012143 212 QSGDMEQSAKCFQDLILKDQNHPA-ALINYAALLLCKYGSVLAGAGANTGEGACLDQASAVNVAKECLLAALKADPKAAH 290 (470)
Q Consensus 212 ~~g~~~~A~~~~~~~l~~~p~~~~-~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~p~~~~ 290 (470)
..|+++.|...|++++...|.+.. .|..++.... +.|+++.|+.+|.++++..|.+..
T Consensus 111 ~~~~~~~a~~i~~~~l~~~~~~~~~~w~~~~~~~~---------------------~~~~~~~ar~i~~~al~~~~~~~~ 169 (308)
T d2onda1 111 SRMKYEKVHSIYNRLLAIEDIDPTLVYIQYMKFAR---------------------RAEGIKSGRMIFKKAREDARTRHH 169 (308)
T ss_dssp HTTCHHHHHHHHHHHHTSSSSCTHHHHHHHHHHHH---------------------HHHCHHHHHHHHHHHHTSTTCCTH
T ss_pred hcccHHHHHHHHHHHHHHhcCChHHHHHHHHHHHH---------------------HcCChHHHHHHHHHHHHhCCCcHH
Confidence 999999999999999999987754 5677776665 688899999999999999999999
Q ss_pred HHHHHHHHHHH-cCChhHHHHHHHHHHhcCCCcccHHHHHHHHHHHHhhhccCchHHhhhhHHHHHHHhhcCCCCCCCcH
Q 012143 291 IWANLANAYYL-TGDHRSSGKCLEKAAKLEPNCMSTRYAVAVSRIKDAERSQEPTEQLSWAGNEMASILREGDPVQIEPP 369 (470)
Q Consensus 291 ~~~~la~~~~~-~g~~~~A~~~~~~a~~~~p~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 369 (470)
.+...+..... .|+.+.|...|++++...|+++..
T Consensus 170 ~~~~~a~~e~~~~~~~~~a~~i~e~~l~~~p~~~~~-------------------------------------------- 205 (308)
T d2onda1 170 VYVTAALMEYYCSKDKSVAFKIFELGLKKYGDIPEY-------------------------------------------- 205 (308)
T ss_dssp HHHHHHHHHHHTSCCHHHHHHHHHHHHHHHTTCHHH--------------------------------------------
T ss_pred HHHHHHHHHHHhccCHHHHHHHHHHHHHhhhhhHHH--------------------------------------------
Confidence 99998887554 588999999999999988886533
Q ss_pred HHHHHHHHHHhccccHHHHHHHHHHHhcchhhhhHhhHHHHHHHhccHHHHHHHHHHHHhcCCCc----HHHHHHHHHHH
Q 012143 370 IAWAGFAAVQKTHHEVAAAFETEENELSKMEECAGAGESAFLDQASAVNVAKECLLAALKADPKA----AHIWANLANAY 445 (470)
Q Consensus 370 ~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~p~~----~~~~~~la~~~ 445 (470)
|...+. .+...|+++.|..+|++++...|.+ ..+|.......
T Consensus 206 --w~~y~~--------------------------------~~~~~g~~~~aR~~fe~ai~~~~~~~~~~~~iw~~~~~fE 251 (308)
T d2onda1 206 --VLAYID--------------------------------YLSHLNEDNNTRVLFERVLTSGSLPPEKSGEIWARFLAFE 251 (308)
T ss_dssp --HHHHHH--------------------------------HHHTTCCHHHHHHHHHHHHHSSSSCGGGCHHHHHHHHHHH
T ss_pred --HHHHHH--------------------------------HHHHcCChHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHH
Confidence 333333 3445566677777777777765543 34666666666
Q ss_pred HHcCChHHHHHHHHHHHHhhcc
Q 012143 446 YLTGDHRSSGKCLEKVLMVYCS 467 (470)
Q Consensus 446 ~~~g~~~~A~~~~~~al~~~~~ 467 (470)
...|+.+.+.+.++++.+++|.
T Consensus 252 ~~~G~~~~~~~~~~r~~~~~~~ 273 (308)
T d2onda1 252 SNIGDLASILKVEKRRFTAFRE 273 (308)
T ss_dssp HHHSCHHHHHHHHHHHHHHTTT
T ss_pred HHcCCHHHHHHHHHHHHHHCcc
Confidence 6777777777777777777764
|
| >d1hh8a_ a.118.8.1 (A:) Neutrophil cytosolic factor 2 (NCF-2, p67-phox) {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Neutrophil cytosolic factor 2 (NCF-2, p67-phox) species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.73 E-value=3.7e-16 Score=125.29 Aligned_cols=140 Identities=17% Similarity=0.196 Sum_probs=111.7
Q ss_pred HHHHHHHHHHcCChHHHHHHHHHHhhcCCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCChHHHHHHHHHHHhhh
Q 012143 169 WNTLGLILLKSGRLQSSISVLSSLLAVDPNNCDCIGNLGIAYFQSGDMEQSAKCFQDLILKDQNHPAALINYAALLLCKY 248 (470)
Q Consensus 169 ~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~l~~~~~~~~ 248 (470)
+++.|..+...|+|++|++.|.+ +.|.++.+++++|.+|..+|++++|+..|+++++++|+++.++.++|.++.
T Consensus 8 l~~~g~~~~~~~d~~~Al~~~~~---i~~~~~~~~~nlG~~~~~~g~~~~A~~~~~kAl~ldp~~~~a~~~~g~~~~--- 81 (192)
T d1hh8a_ 8 LWNEGVLAADKKDWKGALDAFSA---VQDPHSRICFNIGCMYTILKNMTEAEKAFTRSINRDKHLAVAYFQRGMLYY--- 81 (192)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHT---SSSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHH---
T ss_pred HHHHHHHHHHCCCHHHHHHHHHh---cCCCCHHHHHHHHHHHHHcCCchhHHHHHHHHHHHhhhhhhhHHHHHHHHH---
Confidence 34568888888888888888876 345567788888888888888888888888888888888888888887776
Q ss_pred cccccccccchhhhhHHHhcCCHHHHHHHHHHHHhcCCCC----------------HHHHHHHHHHHHHcCChhHHHHHH
Q 012143 249 GSVLAGAGANTGEGACLDQASAVNVAKECLLAALKADPKA----------------AHIWANLANAYYLTGDHRSSGKCL 312 (470)
Q Consensus 249 ~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~p~~----------------~~~~~~la~~~~~~g~~~~A~~~~ 312 (470)
+.|++++|+..|++++...|.+ ..+++++|.++..+|++++|+..+
T Consensus 82 ------------------~~g~~~~A~~~~~kAl~~~~~n~~~~~~~~~~~~~~~~~e~~~n~a~~~~~~~~~~~A~~~l 143 (192)
T d1hh8a_ 82 ------------------QTEKYDLAIKDLKEALIQLRGNQLIDYKILGLQFKLFACEVLYNIAFMYAKKEEWKKAEEQL 143 (192)
T ss_dssp ------------------HTTCHHHHHHHHHHHHHTTTTCSEEECGGGTBCCEEEHHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred ------------------hhccHHHHHHHHHHHHHhCccCchHHHHHhhhhcccchHHHHHHHHHHHHHCCCHHHHHHHH
Confidence 6888888888888887754432 477899999999999999999999
Q ss_pred HHHHhcCCCcccHHHHHHHH
Q 012143 313 EKAAKLEPNCMSTRYAVAVS 332 (470)
Q Consensus 313 ~~a~~~~p~~~~~~~~l~~~ 332 (470)
.+++.+.|+........++.
T Consensus 144 ~~A~~~~~~~~~~~~~~Al~ 163 (192)
T d1hh8a_ 144 ALATSMKSEPRHSKIDKAME 163 (192)
T ss_dssp HHHHTTCCSGGGGHHHHHHH
T ss_pred HHHHhcCCCcchHHHHHHHH
Confidence 99999999876655555443
|
| >d1qqea_ a.118.8.1 (A:) Vesicular transport protein sec17 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Vesicular transport protein sec17 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=99.72 E-value=1.3e-16 Score=137.92 Aligned_cols=225 Identities=11% Similarity=0.007 Sum_probs=159.1
Q ss_pred cccHHHHHHHHHHhhhcCccchHHHHHHHHHHHHcCChHHHHHHHHHHhhcCC------CChHHHHHHHHHHHHcCCHHH
Q 012143 145 PEELEEILSKLKESMQSDTRQAVVWNTLGLILLKSGRLQSSISVLSSLLAVDP------NNCDCIGNLGIAYFQSGDMEQ 218 (470)
Q Consensus 145 ~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~------~~~~~~~~la~~~~~~g~~~~ 218 (470)
.+++++|...|.++ |.+|...|+|++|+.+|.+++++.+ ....++..+|.+|..+|++++
T Consensus 30 ~~~~~~Aa~~y~~a--------------a~~y~~~~~~~~A~~~y~kA~~~~~~~~~~~~~a~~~~~~g~~y~~~~~~~~ 95 (290)
T d1qqea_ 30 SYKFEEAADLCVQA--------------ATIYRLRKELNLAGDSFLKAADYQKKAGNEDEAGNTYVEAYKCFKSGGNSVN 95 (290)
T ss_dssp HHHHHHHHHHHHHH--------------HHHHHHTTCTHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHH
T ss_pred cccHHHHHHHHHHH--------------HHHHHHCcCHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHhCCcHH
Confidence 45677887766654 8899999999999999999998732 234689999999999999999
Q ss_pred HHHHHHHHHhhCCCChHHHHHHHHHHHhhhcccccccccchhhhhHHH-hcCCHHHHHHHHHHHHhcCCC------CHHH
Q 012143 219 SAKCFQDLILKDQNHPAALINYAALLLCKYGSVLAGAGANTGEGACLD-QASAVNVAKECLLAALKADPK------AAHI 291 (470)
Q Consensus 219 A~~~~~~~l~~~p~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~A~~~~~~~~~~~p~------~~~~ 291 (470)
|++.|++++.+.+........ +.++. .+|.++. ..|++++|+.+|++++++.+. ...+
T Consensus 96 A~~~~~~a~~~~~~~~~~~~~-~~~~~--------------~l~~~~~~~~~~~~~A~~~~~~A~~l~~~~~~~~~~~~~ 160 (290)
T d1qqea_ 96 AVDSLENAIQIFTHRGQFRRG-ANFKF--------------ELGEILENDLHDYAKAIDCYELAGEWYAQDQSVALSNKC 160 (290)
T ss_dssp HHHHHHHHHHHHHHTTCHHHH-HHHHH--------------HHHHHHHHTTCCHHHHHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred HHHHHHHhhHHhhhcccchhH-HHHHH--------------HHHHhHhhHHHHHHHHHHHHHHHHHHHHhcCchhhhhhH
Confidence 999999999886655321111 11111 1334433 469999999999999887433 3566
Q ss_pred HHHHHHHHHHcCChhHHHHHHHHHHhcCCCcccHHHHHHHHHHHHhhhccCchHHhhhhHHHHHHHhhcCCCCCCCcHHH
Q 012143 292 WANLANAYYLTGDHRSSGKCLEKAAKLEPNCMSTRYAVAVSRIKDAERSQEPTEQLSWAGNEMASILREGDPVQIEPPIA 371 (470)
Q Consensus 292 ~~~la~~~~~~g~~~~A~~~~~~a~~~~p~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 371 (470)
+..+|.++..+|+|++|+..|++++...|........ ....
T Consensus 161 ~~~la~~~~~~g~y~~A~~~~~~~~~~~~~~~~~~~~---------------------------------------~~~~ 201 (290)
T d1qqea_ 161 FIKCADLKALDGQYIEASDIYSKLIKSSMGNRLSQWS---------------------------------------LKDY 201 (290)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHTTSSCTTTGGG---------------------------------------HHHH
T ss_pred HHHHHHHHHHcChHHHHHHHHHHHHHhCccchhhhhh---------------------------------------HHHH
Confidence 8999999999999999999999999998876532221 1234
Q ss_pred HHHHHHHHhccccHHHHHHHHHHHhcchhh-------hhHhhHHHHHHH--hccHHHHHHHHHHHHhcCCCcHHH
Q 012143 372 WAGFAAVQKTHHEVAAAFETEENELSKMEE-------CAGAGESAFLDQ--ASAVNVAKECLLAALKADPKAAHI 437 (470)
Q Consensus 372 ~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~-------~~~~~l~~~~~~--~~~~~~A~~~~~~al~~~p~~~~~ 437 (470)
+...+.++...+++..|...+.+.....+. .....+..++.. .+.+++|+..|.++.+++|.....
T Consensus 202 ~~~~~~~~l~~~d~~~A~~~~~~~~~~~~~~~~sre~~~l~~l~~a~~~~d~e~~~eai~~y~~~~~lD~~~~~~ 276 (290)
T d1qqea_ 202 FLKKGLCQLAATDAVAAARTLQEGQSEDPNFADSRESNFLKSLIDAVNEGDSEQLSEHCKEFDNFMRLDKWKITI 276 (290)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHGGGCC---------HHHHHHHHHHHHTTCTTTHHHHHHHHTTSSCCCHHHHHH
T ss_pred HHHHHHHHHHhccHHHHHHHHHHHHHhCCCccchHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHhhcCHHHHHH
Confidence 566777777788888888888776553221 122333334333 345788888888777776544333
|
| >d1elwa_ a.118.8.1 (A:) Hop {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Hop species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.72 E-value=3.3e-17 Score=119.90 Aligned_cols=103 Identities=13% Similarity=0.185 Sum_probs=99.0
Q ss_pred ccCcccHHHHHHHHHHhhhcCccchHHHHHHHHHHHHcCChHHHHHHHHHHhhcCCCChHHHHHHHHHHHHcCCHHHHHH
Q 012143 142 ELEPEELEEILSKLKESMQSDTRQAVVWNTLGLILLKSGRLQSSISVLSSLLAVDPNNCDCIGNLGIAYFQSGDMEQSAK 221 (470)
Q Consensus 142 ~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~la~~~~~~g~~~~A~~ 221 (470)
++..|++++|+..|++++..+|+++.+|..+|.++..+|++++|+..|.++++++|+++.+|+.+|.++..+|++++|+.
T Consensus 13 ~~~~g~~~eAi~~~~~al~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~g~~~~~~~~~~~A~~ 92 (117)
T d1elwa_ 13 ALSVGNIDDALQCYSEAIKLDPHNHVLYSNRSAAYAKKGDYQKAYEDGCKTVDLKPDWGKGYSRKAAALEFLNRFEEAKR 92 (117)
T ss_dssp HHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHH
T ss_pred HHHcCCHHHHHHHHHHHHhcCCcchhhhhcccccccccccccccchhhhhHHHhccchhhHHHHHHHHHHHccCHHHHHH
Confidence 56789999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHhhCCCChHHHHHHHHHH
Q 012143 222 CFQDLILKDQNHPAALINYAALL 244 (470)
Q Consensus 222 ~~~~~l~~~p~~~~~~~~l~~~~ 244 (470)
.|+++++.+|+++..+..++.+.
T Consensus 93 ~~~~a~~~~p~~~~~~~~l~~l~ 115 (117)
T d1elwa_ 93 TYEEGLKHEANNPQLKEGLQNME 115 (117)
T ss_dssp HHHHHHTTCTTCHHHHHHHHHHH
T ss_pred HHHHHHHhCCCCHHHHHHHHHHh
Confidence 99999999999999998887664
|
| >d1ya0a1 a.118.8.1 (A:1-497) SMG-7 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: SMG-7 species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.72 E-value=2.6e-18 Score=159.99 Aligned_cols=223 Identities=11% Similarity=0.021 Sum_probs=152.6
Q ss_pred hHHHHHHHHHHhCCCChhHHHHHHHHHHHhCChhHHHHHHHHHHHHHhhhhcccchhhhHHHHHHhhhccccccccCCCc
Q 012143 59 SLKTGLVHVARKMPKNAHAHFLLGLMYQRLGQPLKAVSSYEKAEEILLRCEADIARPELLSLVQIHHAQCLLPESSGDNS 138 (470)
Q Consensus 59 ~A~~~~~~~l~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 138 (470)
+|.+.|++++++.|+.++++..+|.++..+|++++| |++++..+|+........ ...|
T Consensus 4 eA~q~~~qA~~l~p~~a~a~~~la~~~~~~~~l~ea---ye~~i~~dp~~a~~~~~e-----~~Lw-------------- 61 (497)
T d1ya0a1 4 QSAQYLRQAEVLKADMTDSKLGPAEVWTSRQALQDL---YQKMLVTDLEYALDKKVE-----QDLW-------------- 61 (497)
T ss_dssp HHHHHHHHHHHHHGGGTCSSSCSSSSHHHHHHHHHH---HHHHHHHCHHHHHHHTHH-----HHHH--------------
T ss_pred HHHHHHHHHHHcCCCCHHHHhhHHHHHHHHchHHHH---HHHHHHcChhhHHHHhHH-----HHHH--------------
Confidence 688999999999999999999999999999999986 899998876532211000 0111
Q ss_pred cccccCcccHHHHHHHHHHhhhcCc--cchH-HHHHHHHHHHHcCChHHHHHHHHHHhhcCCCChHHHHHHHHHHHHcCC
Q 012143 139 LDKELEPEELEEILSKLKESMQSDT--RQAV-VWNTLGLILLKSGRLQSSISVLSSLLAVDPNNCDCIGNLGIAYFQSGD 215 (470)
Q Consensus 139 ~~~~~~~~~~~~A~~~~~~~~~~~p--~~~~-~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~la~~~~~~g~ 215 (470)
...+..++..+++..+... +... ....++.+....+.|..|+..+.+++.++|++...+..+|.++...|+
T Consensus 62 ------~~~y~~~ie~~r~~~k~~~~~~~~~~~~~~~~~l~~a~~~Y~~ai~~l~~~~~l~~~~~~~~~~lg~~~~~~~~ 135 (497)
T d1ya0a1 62 ------NHAFKNQITTLQGQAKNRANPNRSEVQANLSLFLEAASGFYTQLLQELCTVFNVDLPCRVKSSQLGIISNKQTH 135 (497)
T ss_dssp ------HHHTHHHHHHHHHHHSCSSCTTTTHHHHHHHHHHHHHHHHHHHHHHHHTC------------------------
T ss_pred ------HHHHHHHHHHHHHhcccccCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCChhhHHHHHHhHHHHHhCCC
Confidence 1123667788887775442 2222 223356677778999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHhhCCCChHHHHHHHHHHHhhhcccccccccchhhhhHHHhcCCHHHHHHHHHHHHhcCCCCHHHHHHH
Q 012143 216 MEQSAKCFQDLILKDQNHPAALINYAALLLCKYGSVLAGAGANTGEGACLDQASAVNVAKECLLAALKADPKAAHIWANL 295 (470)
Q Consensus 216 ~~~A~~~~~~~l~~~p~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~l 295 (470)
+++|+..+.+++..+|. .++..+|.++. ..|++++|+.+|+++++++|+++.+|.++
T Consensus 136 ~~~A~~~~~~al~~~~~--~~~~~LG~l~~---------------------~~~~~~~A~~~y~~A~~l~P~~~~~~~~L 192 (497)
T d1ya0a1 136 TSAIVKPQSSSCSYICQ--HCLVHLGDIAR---------------------YRNQTSQAESYYRHAAQLVPSNGQPYNQL 192 (497)
T ss_dssp -------CCHHHHHHHH--HHHHHHHHHHH---------------------HTTCHHHHHHHHHHHHHHCTTBSHHHHHH
T ss_pred HHHHHHHHHHHhCCCHH--HHHHHHHHHHH---------------------HcccHHHHHHHHHHHHHHCCCchHHHHHH
Confidence 99999999999887653 45666666665 79999999999999999999999999999
Q ss_pred HHHHHHcCChhHHHHHHHHHHhcCCCcccHHHHHHHH
Q 012143 296 ANAYYLTGDHRSSGKCLEKAAKLEPNCMSTRYAVAVS 332 (470)
Q Consensus 296 a~~~~~~g~~~~A~~~~~~a~~~~p~~~~~~~~l~~~ 332 (470)
|.++...|++.+|+.+|.+++...|..+.++.+++..
T Consensus 193 g~~~~~~~~~~~A~~~y~ral~~~~~~~~a~~nL~~~ 229 (497)
T d1ya0a1 193 AILASSKGDHLTTIFYYCRSIAVKFPFPAASTNLQKA 229 (497)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHSSSBCCHHHHHHHHHH
T ss_pred HHHHHHcCCHHHHHHHHHHHHhCCCCCHHHHHHHHHH
Confidence 9999999999999999999999999999998888653
|
| >d2onda1 a.118.8.7 (A:242-549) Cleavage stimulation factor 77 kDa subunit CSTF3 {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: HAT/Suf repeat domain: Cleavage stimulation factor 77 kDa subunit CSTF3 species: Mouse (Mus musculus) [TaxId: 10090]
Probab=99.72 E-value=1.9e-15 Score=131.71 Aligned_cols=205 Identities=6% Similarity=-0.029 Sum_probs=170.5
Q ss_pred ChhhHHHHHHHHHHhCCCChhHHHHHHHHHHHhCChhHHHHHHHHHHHHHhhhhcccchhhhHHHHHHhhhccccccccC
Q 012143 56 KVSSLKTGLVHVARKMPKNAHAHFLLGLMYQRLGQPLKAVSSYEKAEEILLRCEADIARPELLSLVQIHHAQCLLPESSG 135 (470)
Q Consensus 56 ~~~~A~~~~~~~l~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 135 (470)
..+++...|++++...|.++.+|+..+......|+........
T Consensus 31 ~~~Rv~~vyerAl~~~~~~~~lW~~y~~~~~~~~~~~~~~~~~------------------------------------- 73 (308)
T d2onda1 31 ITKRVMFAYEQCLLVLGHHPDIWYEAAQYLEQSSKLLAEKGDM------------------------------------- 73 (308)
T ss_dssp HHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHTSCC-------------------------------------
T ss_pred hHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHcCchHHHHHHH-------------------------------------
Confidence 3466778899999999999999987666554332211000000
Q ss_pred CCccccccCcccHHHHHHHHHHhhhc-CccchHHHHHHHHHHHHcCChHHHHHHHHHHhhcCCCCh-HHHHHHHHHHHHc
Q 012143 136 DNSLDKELEPEELEEILSKLKESMQS-DTRQAVVWNTLGLILLKSGRLQSSISVLSSLLAVDPNNC-DCIGNLGIAYFQS 213 (470)
Q Consensus 136 ~~~~~~~~~~~~~~~A~~~~~~~~~~-~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~-~~~~~la~~~~~~ 213 (470)
....+..++|...|++++.. .|.+...|...+..+..+|+++.|...|++++...|.+. .+|..++....+.
T Consensus 74 ------~~~~~~~~~a~~i~~ral~~~~p~~~~l~~~ya~~~~~~~~~~~a~~i~~~~l~~~~~~~~~~w~~~~~~~~~~ 147 (308)
T d2onda1 74 ------NNAKLFSDEAANIYERAISTLLKKNMLLYFAYADYEESRMKYEKVHSIYNRLLAIEDIDPTLVYIQYMKFARRA 147 (308)
T ss_dssp ------HHHHHHHHHHHHHHHHHHTTTTTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTSSSSCTHHHHHHHHHHHHHH
T ss_pred ------hhcccchHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHhcccHHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHc
Confidence 11223458899999999975 788888999999999999999999999999999999775 4789999999999
Q ss_pred CCHHHHHHHHHHHHhhCCCChHHHHHHHHHHHhhhcccccccccchhhhhHHHhcCCHHHHHHHHHHHHhcCCCCHHHHH
Q 012143 214 GDMEQSAKCFQDLILKDQNHPAALINYAALLLCKYGSVLAGAGANTGEGACLDQASAVNVAKECLLAALKADPKAAHIWA 293 (470)
Q Consensus 214 g~~~~A~~~~~~~l~~~p~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~ 293 (470)
|+++.|+..|++++...|.+...+...+..... ..|+.+.|..+|++++...|+++..|.
T Consensus 148 ~~~~~ar~i~~~al~~~~~~~~~~~~~a~~e~~--------------------~~~~~~~a~~i~e~~l~~~p~~~~~w~ 207 (308)
T d2onda1 148 EGIKSGRMIFKKAREDARTRHHVYVTAALMEYY--------------------CSKDKSVAFKIFELGLKKYGDIPEYVL 207 (308)
T ss_dssp HCHHHHHHHHHHHHTSTTCCTHHHHHHHHHHHH--------------------TSCCHHHHHHHHHHHHHHHTTCHHHHH
T ss_pred CChHHHHHHHHHHHHhCCCcHHHHHHHHHHHHH--------------------hccCHHHHHHHHHHHHHhhhhhHHHHH
Confidence 999999999999999999999988887766442 468999999999999999999999999
Q ss_pred HHHHHHHHcCChhHHHHHHHHHHhcCCCcc
Q 012143 294 NLANAYYLTGDHRSSGKCLEKAAKLEPNCM 323 (470)
Q Consensus 294 ~la~~~~~~g~~~~A~~~~~~a~~~~p~~~ 323 (470)
..+..+...|+++.|..+|++++...|.++
T Consensus 208 ~y~~~~~~~g~~~~aR~~fe~ai~~~~~~~ 237 (308)
T d2onda1 208 AYIDYLSHLNEDNNTRVLFERVLTSGSLPP 237 (308)
T ss_dssp HHHHHHHTTCCHHHHHHHHHHHHHSSSSCG
T ss_pred HHHHHHHHcCChHHHHHHHHHHHHhCCCCh
Confidence 999999999999999999999999887654
|
| >d1a17a_ a.118.8.1 (A:) Protein phosphatase 5 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Protein phosphatase 5 species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.72 E-value=2e-16 Score=123.20 Aligned_cols=124 Identities=14% Similarity=0.083 Sum_probs=108.2
Q ss_pred HHHHHHHHHHHHcCChHHHHHHHHHHhhcCCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCChHHHHHHHHHHHh
Q 012143 167 VVWNTLGLILLKSGRLQSSISVLSSLLAVDPNNCDCIGNLGIAYFQSGDMEQSAKCFQDLILKDQNHPAALINYAALLLC 246 (470)
Q Consensus 167 ~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~l~~~~~~ 246 (470)
..+...|..++..|+|++|+.+|+++++++|+++.+|..+|.++..+|++++|+..|+++++++|++..++..+|.++.
T Consensus 11 ~~l~~~gn~~~~~~~y~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~~~~~~A~~~~~kal~~~p~~~~a~~~~g~~~~- 89 (159)
T d1a17a_ 11 EELKTQANDYFKAKDYENAIKFYSQAIELNPSNAIYYGNRSLAYLRTECYGYALGDATRAIELDKKYIKGYYRRAASNM- 89 (159)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHH-
T ss_pred HHHHHHHHHHHHcCCHHHHHHHhhhccccchhhhhhhhhhHHHHHhccccchHHHHHHHHHHHcccchHHHHHHHHHHH-
Confidence 4456679999999999999999999999999999999999999999999999999999999999999999999988887
Q ss_pred hhcccccccccchhhhhHHHhcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHH--cCChhHHHHH
Q 012143 247 KYGSVLAGAGANTGEGACLDQASAVNVAKECLLAALKADPKAAHIWANLANAYYL--TGDHRSSGKC 311 (470)
Q Consensus 247 ~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~la~~~~~--~g~~~~A~~~ 311 (470)
..|++++|+.++++++.++|+++.++..++.+... .+.+++|+..
T Consensus 90 --------------------~~g~~~eA~~~~~~a~~~~p~~~~~~~~l~~~~~~~~~~~~~~a~~~ 136 (159)
T d1a17a_ 90 --------------------ALGKFRAALRDYETVVKVKPHDKDAKMKYQECNKIVKQKAFERAIAG 136 (159)
T ss_dssp --------------------HTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred --------------------HcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHHHhC
Confidence 69999999999999999999999998888777543 3335555443
|
| >d1hh8a_ a.118.8.1 (A:) Neutrophil cytosolic factor 2 (NCF-2, p67-phox) {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Neutrophil cytosolic factor 2 (NCF-2, p67-phox) species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.71 E-value=3.5e-16 Score=125.43 Aligned_cols=158 Identities=10% Similarity=0.097 Sum_probs=121.3
Q ss_pred cCcccHHHHHHHHHHhhhcCccchHHHHHHHHHHHHcCChHHHHHHHHHHhhcCCCChHHHHHHHHHHHHcCCHHHHHHH
Q 012143 143 LEPEELEEILSKLKESMQSDTRQAVVWNTLGLILLKSGRLQSSISVLSSLLAVDPNNCDCIGNLGIAYFQSGDMEQSAKC 222 (470)
Q Consensus 143 ~~~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~la~~~~~~g~~~~A~~~ 222 (470)
...|++++|+..|.++ .|.++.+++++|.+|..+|++++|+.+|+++++++|+++.+++++|.++..+|++++|+..
T Consensus 16 ~~~~d~~~Al~~~~~i---~~~~~~~~~nlG~~~~~~g~~~~A~~~~~kAl~ldp~~~~a~~~~g~~~~~~g~~~~A~~~ 92 (192)
T d1hh8a_ 16 ADKKDWKGALDAFSAV---QDPHSRICFNIGCMYTILKNMTEAEKAFTRSINRDKHLAVAYFQRGMLYYQTEKYDLAIKD 92 (192)
T ss_dssp HHTTCHHHHHHHHHTS---SSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred HHCCCHHHHHHHHHhc---CCCCHHHHHHHHHHHHHcCCchhHHHHHHHHHHHhhhhhhhHHHHHHHHHhhccHHHHHHH
Confidence 4678899999999875 4567889999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHhhCCCChHH-HHHHHHHHHhhhcccccccccchhhhhHHHhcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHH
Q 012143 223 FQDLILKDQNHPAA-LINYAALLLCKYGSVLAGAGANTGEGACLDQASAVNVAKECLLAALKADPKAAHIWANLANAYYL 301 (470)
Q Consensus 223 ~~~~l~~~p~~~~~-~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~la~~~~~ 301 (470)
|++++...|.+... +..++. .........++.+|.++...|++++|++.+.+++.+.|+. .
T Consensus 93 ~~kAl~~~~~n~~~~~~~~~~------~~~~~~~e~~~n~a~~~~~~~~~~~A~~~l~~A~~~~~~~------------~ 154 (192)
T d1hh8a_ 93 LKEALIQLRGNQLIDYKILGL------QFKLFACEVLYNIAFMYAKKEEWKKAEEQLALATSMKSEP------------R 154 (192)
T ss_dssp HHHHHHTTTTCSEEECGGGTB------CCEEEHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCCSG------------G
T ss_pred HHHHHHhCccCchHHHHHhhh------hcccchHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCc------------c
Confidence 99999876655321 000000 0000011233445666679999999999999999999874 2
Q ss_pred cCChhHHHHHHHHHHhcCCC
Q 012143 302 TGDHRSSGKCLEKAAKLEPN 321 (470)
Q Consensus 302 ~g~~~~A~~~~~~a~~~~p~ 321 (470)
.+..+.|+..+.+.....|.
T Consensus 155 ~~~~~~Al~~~~~~~~~~~~ 174 (192)
T d1hh8a_ 155 HSKIDKAMECVWKQKLYEPV 174 (192)
T ss_dssp GGHHHHHHHHHHTTCCCCCC
T ss_pred hHHHHHHHHHHHhhhhCCcc
Confidence 33345667666666555554
|
| >d1qqea_ a.118.8.1 (A:) Vesicular transport protein sec17 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Vesicular transport protein sec17 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=99.71 E-value=1.7e-16 Score=137.10 Aligned_cols=209 Identities=11% Similarity=0.051 Sum_probs=153.8
Q ss_pred hhhcccchhhhhcChhhHHHHHHHHHHhC------CCChhHHHHHHHHHHHhCChhHHHHHHHHHHHHHhhhhcccchhh
Q 012143 43 QSGLGTSSSSREEKVSSLKTGLVHVARKM------PKNAHAHFLLGLMYQRLGQPLKAVSSYEKAEEILLRCEADIARPE 116 (470)
Q Consensus 43 ~~~~~~~~~~~~~~~~~A~~~~~~~l~~~------p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~ 116 (470)
|...|.+ +...+++++|...|.++++.. |....++..+|.+|...|++++|+..|++++.+.+... .
T Consensus 40 y~~aa~~-y~~~~~~~~A~~~y~kA~~~~~~~~~~~~~a~~~~~~g~~y~~~~~~~~A~~~~~~a~~~~~~~~------~ 112 (290)
T d1qqea_ 40 CVQAATI-YRLRKELNLAGDSFLKAADYQKKAGNEDEAGNTYVEAYKCFKSGGNSVNAVDSLENAIQIFTHRG------Q 112 (290)
T ss_dssp HHHHHHH-HHHTTCTHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTT------C
T ss_pred HHHHHHH-HHHCcCHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHhCCcHHHHHHHHHhhHHhhhcc------c
Confidence 4455777 999999999999999999863 22346899999999999999999999999999876642 2
Q ss_pred hHHHHHHhhhccccccccCCCccccccCcccHHHHHHHHHHhhhcCcc------chHHHHHHHHHHHHcCChHHHHHHHH
Q 012143 117 LLSLVQIHHAQCLLPESSGDNSLDKELEPEELEEILSKLKESMQSDTR------QAVVWNTLGLILLKSGRLQSSISVLS 190 (470)
Q Consensus 117 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~p~------~~~~~~~l~~~~~~~~~~~~A~~~~~ 190 (470)
......++..++.++ ....|++++|+..|++++...+. ...++..+|.++..+|+|++|+..|+
T Consensus 113 ~~~~~~~~~~l~~~~----------~~~~~~~~~A~~~~~~A~~l~~~~~~~~~~~~~~~~la~~~~~~g~y~~A~~~~~ 182 (290)
T d1qqea_ 113 FRRGANFKFELGEIL----------ENDLHDYAKAIDCYELAGEWYAQDQSVALSNKCFIKCADLKALDGQYIEASDIYS 182 (290)
T ss_dssp HHHHHHHHHHHHHHH----------HHTTCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred chhHHHHHHHHHHhH----------hhHHHHHHHHHHHHHHHHHHHHhcCchhhhhhHHHHHHHHHHHcChHHHHHHHHH
Confidence 222334444554433 13457889999999999876433 24568899999999999999999999
Q ss_pred HHhhcCCCCh-------HHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCChHHH-----HHHHHHHHhhhcccccccccc
Q 012143 191 SLLAVDPNNC-------DCIGNLGIAYFQSGDMEQSAKCFQDLILKDQNHPAAL-----INYAALLLCKYGSVLAGAGAN 258 (470)
Q Consensus 191 ~a~~~~~~~~-------~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~-----~~l~~~~~~~~~~~~~~~~~~ 258 (470)
+++...|..+ ..+...|.++...|++..|...++++++++|...... ..+...+..
T Consensus 183 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~d~~~A~~~~~~~~~~~~~~~~sre~~~l~~l~~a~~~------------ 250 (290)
T d1qqea_ 183 KLIKSSMGNRLSQWSLKDYFLKKGLCQLAATDAVAAARTLQEGQSEDPNFADSRESNFLKSLIDAVNE------------ 250 (290)
T ss_dssp HHHHTTSSCTTTGGGHHHHHHHHHHHHHHTTCHHHHHHHHHGGGCC---------HHHHHHHHHHHHT------------
T ss_pred HHHHhCccchhhhhhHHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCCccchHHHHHHHHHHHHHHh------------
Confidence 9999877654 4567889999999999999999999999998765542 222222221
Q ss_pred hhhhhHHHhcCCHHHHHHHHHHHHhcCCC
Q 012143 259 TGEGACLDQASAVNVAKECLLAALKADPK 287 (470)
Q Consensus 259 ~~~~~~~~~~~~~~~A~~~~~~~~~~~p~ 287 (470)
...+.+++|+..|.++.+++|.
T Consensus 251 -------~d~e~~~eai~~y~~~~~lD~~ 272 (290)
T d1qqea_ 251 -------GDSEQLSEHCKEFDNFMRLDKW 272 (290)
T ss_dssp -------TCTTTHHHHHHHHTTSSCCCHH
T ss_pred -------cCHHHHHHHHHHHHHHhhcCHH
Confidence 0245678888888777766653
|
| >d1a17a_ a.118.8.1 (A:) Protein phosphatase 5 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Protein phosphatase 5 species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.68 E-value=3e-16 Score=122.14 Aligned_cols=104 Identities=8% Similarity=0.158 Sum_probs=99.2
Q ss_pred ccCcccHHHHHHHHHHhhhcCccchHHHHHHHHHHHHcCChHHHHHHHHHHhhcCCCChHHHHHHHHHHHHcCCHHHHHH
Q 012143 142 ELEPEELEEILSKLKESMQSDTRQAVVWNTLGLILLKSGRLQSSISVLSSLLAVDPNNCDCIGNLGIAYFQSGDMEQSAK 221 (470)
Q Consensus 142 ~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~la~~~~~~g~~~~A~~ 221 (470)
+++.|+|++|+..|+++++.+|+++.+|..+|.++...|++++|+..|+++++++|+++.++..+|.++..+|++++|+.
T Consensus 20 ~~~~~~y~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~~~~~~A~~~~~kal~~~p~~~~a~~~~g~~~~~~g~~~eA~~ 99 (159)
T d1a17a_ 20 YFKAKDYENAIKFYSQAIELNPSNAIYYGNRSLAYLRTECYGYALGDATRAIELDKKYIKGYYRRAASNMALGKFRAALR 99 (159)
T ss_dssp HHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHH
T ss_pred HHHcCCHHHHHHHhhhccccchhhhhhhhhhHHHHHhccccchHHHHHHHHHHHcccchHHHHHHHHHHHHcCCHHHHHH
Confidence 56788999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHhhCCCChHHHHHHHHHHH
Q 012143 222 CFQDLILKDQNHPAALINYAALLL 245 (470)
Q Consensus 222 ~~~~~l~~~p~~~~~~~~l~~~~~ 245 (470)
.+++++.++|+++.++..++.+..
T Consensus 100 ~~~~a~~~~p~~~~~~~~l~~~~~ 123 (159)
T d1a17a_ 100 DYETVVKVKPHDKDAKMKYQECNK 123 (159)
T ss_dssp HHHHHHHHSTTCHHHHHHHHHHHH
T ss_pred HHHHHHHcCCCCHHHHHHHHHHHH
Confidence 999999999999999887776653
|
| >d1ouva_ a.118.18.1 (A:) Cysteine rich protein C (HcpC) {Helicobacter pylori [TaxId: 210]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: HCP-like family: HCP-like domain: Cysteine rich protein C (HcpC) species: Helicobacter pylori [TaxId: 210]
Probab=99.65 E-value=2.8e-13 Score=115.08 Aligned_cols=229 Identities=14% Similarity=0.090 Sum_probs=172.5
Q ss_pred chHHHHHHHHHHHHcCChHHHHHHHHHHhhcCCCChHHHHHHHHHHHH----cCCHHHHHHHHHHHHhhCCCChHHHHHH
Q 012143 165 QAVVWNTLGLILLKSGRLQSSISVLSSLLAVDPNNCDCIGNLGIAYFQ----SGDMEQSAKCFQDLILKDQNHPAALINY 240 (470)
Q Consensus 165 ~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~la~~~~~----~g~~~~A~~~~~~~l~~~p~~~~~~~~l 240 (470)
||.+++.+|..+...+++.+|+++|+++.+. .++.+++.||.+|.. ..++..|...++.+.. +.++.+...+
T Consensus 1 ~p~~~~~lG~~~~~~~d~~~A~~~~~kAa~~--g~~~A~~~Lg~~y~~G~~~~~d~~~a~~~~~~a~~--~~~~~a~~~l 76 (265)
T d1ouva_ 1 DPKELVGLGAKSYKEKDFTQAKKYFEKACDL--KENSGCFNLGVLYYQGQGVEKNLKKAASFYAKACD--LNYSNGCHLL 76 (265)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHT--TCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHH--TTCHHHHHHH
T ss_pred CHHHHHHHHHHHHHCCCHHHHHHHHHHHHHC--CCHHHHHHHHHHHHcCCCcchhHHHHHHhhccccc--ccccchhhcc
Confidence 5788999999999999999999999999765 578899999999987 6789999999998775 4577777888
Q ss_pred HHHHHhhhcccccccccchhhhhHHHhcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHH----cCChhHHHHHHHHHH
Q 012143 241 AALLLCKYGSVLAGAGANTGEGACLDQASAVNVAKECLLAALKADPKAAHIWANLANAYYL----TGDHRSSGKCLEKAA 316 (470)
Q Consensus 241 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~la~~~~~----~g~~~~A~~~~~~a~ 316 (470)
+.++..... ..++.+.|...++++....+ ..+...++..+.. ......|...+.+..
T Consensus 77 ~~~~~~~~~-----------------~~~~~~~a~~~~~~a~~~g~--~~a~~~l~~~~~~~~~~~~~~~~a~~~~~~~~ 137 (265)
T d1ouva_ 77 GNLYYSGQG-----------------VSQNTNKALQYYSKACDLKY--AEGCASLGGIYHDGKVVTRDFKKAVEYFTKAC 137 (265)
T ss_dssp HHHHHHTSS-----------------SCCCHHHHHHHHHHHHHTTC--HHHHHHHHHHHHHCSSSCCCHHHHHHHHHHHH
T ss_pred ccccccccc-----------------cchhhHHHHHHHhhhhhhhh--hhHHHhhcccccCCCcccchhHHHHHHhhhhh
Confidence 777653111 35678889999999887654 5666667766665 334555555555544
Q ss_pred hcCCCcccHHHHHHHHHHHHhhhccCchHHhhhhHHHHHHHhhcCCCCCCCcHHHHHHHHHHHhc----cccHHHHHHHH
Q 012143 317 KLEPNCMSTRYAVAVSRIKDAERSQEPTEQLSWAGNEMASILREGDPVQIEPPIAWAGFAAVQKT----HHEVAAAFETE 392 (470)
Q Consensus 317 ~~~p~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~----~~~~~~A~~~~ 392 (470)
.. .+. ..+..+|..+.. ..+...+...+
T Consensus 138 ~~--~~~----------------------------------------------~~~~~L~~~~~~~~~~~~~~~~~~~~~ 169 (265)
T d1ouva_ 138 DL--NDG----------------------------------------------DGCTILGSLYDAGRGTPKDLKKALASY 169 (265)
T ss_dssp HT--TCH----------------------------------------------HHHHHHHHHHHHTSSSCCCHHHHHHHH
T ss_pred cc--ccc----------------------------------------------chhhhhhhhhccCCCcccccccchhhh
Confidence 42 222 234444444442 34556667777
Q ss_pred HHHhcchhhhhHhhHHHHHHH----hccHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHH----cCChHHHHHHHHHHHHh
Q 012143 393 ENELSKMEECAGAGESAFLDQ----ASAVNVAKECLLAALKADPKAAHIWANLANAYYL----TGDHRSSGKCLEKVLMV 464 (470)
Q Consensus 393 ~~~~~~~~~~~~~~l~~~~~~----~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~----~g~~~~A~~~~~~al~~ 464 (470)
....+.....+.+.+|.++.. ..++++|+.+|+++.+. +++.++++||.+|.. ..++++|.++|++|.+.
T Consensus 170 ~~a~~~g~~~A~~~lg~~y~~g~~~~~d~~~A~~~~~~aa~~--g~~~a~~~LG~~y~~G~g~~~n~~~A~~~~~kAa~~ 247 (265)
T d1ouva_ 170 DKACDLKDSPGCFNAGNMYHHGEGATKNFKEALARYSKACEL--ENGGGCFNLGAMQYNGEGVTRNEKQAIENFKKGCKL 247 (265)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHTCSSCCCHHHHHHHHHHHHHT--TCHHHHHHHHHHHHTTSSSSCCSTTHHHHHHHHHHH
T ss_pred hccccccccccccchhhhcccCcccccchhhhhhhHhhhhcc--cCHHHHHHHHHHHHcCCCCccCHHHHHHHHHHHHHC
Confidence 777777778888999988886 66899999999999887 578999999999986 44899999999999887
Q ss_pred hc
Q 012143 465 YC 466 (470)
Q Consensus 465 ~~ 466 (470)
-.
T Consensus 248 g~ 249 (265)
T d1ouva_ 248 GA 249 (265)
T ss_dssp TC
T ss_pred cC
Confidence 53
|
| >d2c2la1 a.118.8.1 (A:24-224) STIP1 homology and U box-containing protein 1, STUB1 {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: STIP1 homology and U box-containing protein 1, STUB1 species: Mouse (Mus musculus) [TaxId: 10090]
Probab=99.64 E-value=5.1e-16 Score=126.50 Aligned_cols=117 Identities=12% Similarity=0.048 Sum_probs=94.0
Q ss_pred hHHHHHHHHHHHHcCChHHHHHHHHHHhhcCCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCChHHHHHHHHHHH
Q 012143 166 AVVWNTLGLILLKSGRLQSSISVLSSLLAVDPNNCDCIGNLGIAYFQSGDMEQSAKCFQDLILKDQNHPAALINYAALLL 245 (470)
Q Consensus 166 ~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~l~~~~~ 245 (470)
+..+...|..++..|+|++|+..|++++.++|.++.+|.++|.+|...|++++|+..|++++.++|+++.++..+|.++.
T Consensus 4 a~~l~~~Gn~~~~~g~~~~Ai~~~~kal~~~p~~~~~~~~lg~~y~~~~~~~~Ai~~~~~al~l~p~~~~a~~~lg~~~~ 83 (201)
T d2c2la1 4 AQELKEQGNRLFVGRKYPEAAACYGRAITRNPLVAVYYTNRALCYLKMQQPEQALADCRRALELDGQSVKAHFFLGQCQL 83 (201)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHTTSCTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHhHHHHHhhhhhhhhhhHHHHHHHHhCCCcHHHHHHHHHHHH
Confidence 45677888888888888888888888888888888888888888888888888888888888888888888888888877
Q ss_pred hhhcccccccccchhhhhHHHhcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcC
Q 012143 246 CKYGSVLAGAGANTGEGACLDQASAVNVAKECLLAALKADPKAAHIWANLANAYYLTG 303 (470)
Q Consensus 246 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~la~~~~~~g 303 (470)
..|++++|+..|+++++++|++...+...+..+...+
T Consensus 84 ---------------------~l~~~~~A~~~~~~al~l~p~~~~~~~~~~~~~l~~~ 120 (201)
T d2c2la1 84 ---------------------EMESYDEAIANLQRAYSLAKEQRLNFGDDIPSALRIA 120 (201)
T ss_dssp ---------------------HTTCHHHHHHHHHHHHHHHHHTTCCCCSHHHHHHHHH
T ss_pred ---------------------HCCCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHHH
Confidence 6888888888888888887765444444444444333
|
| >d1ihga1 a.118.8.1 (A:197-365) Cyclophilin 40 {Cow (Bos taurus) [TaxId: 9913]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Cyclophilin 40 species: Cow (Bos taurus) [TaxId: 9913]
Probab=99.64 E-value=4e-15 Score=116.86 Aligned_cols=128 Identities=11% Similarity=0.053 Sum_probs=110.7
Q ss_pred HHHHHHHHHHHhCChhHHHHHHHHHHHHHhhhhcccchhhhHHHHHHhhhccccccccCCCccccccCcccHHHHHHHHH
Q 012143 77 AHFLLGLMYQRLGQPLKAVSSYEKAEEILLRCEADIARPELLSLVQIHHAQCLLPESSGDNSLDKELEPEELEEILSKLK 156 (470)
Q Consensus 77 ~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~ 156 (470)
.+...|..++..|++.+|+..|.+++...+.. .+.....
T Consensus 29 ~~~~~~~~~~~~~~y~~Ai~~y~~al~~~~~~-----------------------------------------~~~~~~~ 67 (169)
T d1ihga1 29 DLKNIGNTFFKSQNWEMAIKKYTKVLRYVEGS-----------------------------------------RAAAEDA 67 (169)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHH-----------------------------------------HHHSCHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHhhhhh-----------------------------------------hhhhhhH
Confidence 34568999999999999999999999875331 1112223
Q ss_pred HhhhcCccchHHHHHHHHHHHHcCChHHHHHHHHHHhhcCCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCChHH
Q 012143 157 ESMQSDTRQAVVWNTLGLILLKSGRLQSSISVLSSLLAVDPNNCDCIGNLGIAYFQSGDMEQSAKCFQDLILKDQNHPAA 236 (470)
Q Consensus 157 ~~~~~~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~ 236 (470)
.....+|....++.++|.++..+|++++|+..|+++++++|+++.+++.+|.++..+|++++|+..|+++++++|++..+
T Consensus 68 ~~~~~~~~~~~~~~nla~~~~~~~~~~~Ai~~~~~al~~~p~~~~a~~~~g~~~~~l~~~~~A~~~~~~al~l~p~n~~~ 147 (169)
T d1ihga1 68 DGAKLQPVALSCVLNIGACKLKMSDWQGAVDSCLEALEIDPSNTKALYRRAQGWQGLKEYDQALADLKKAQEIAPEDKAI 147 (169)
T ss_dssp HHGGGHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHH
T ss_pred HHHHhChhhHHHHHHHHHHHHhhcccchhhhhhhhhhhhhhhhhhHHHhHHHHHHHccCHHHHHHHHHHHHHhCCCCHHH
Confidence 34456788889999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHH
Q 012143 237 LINYAALLL 245 (470)
Q Consensus 237 ~~~l~~~~~ 245 (470)
...+..+..
T Consensus 148 ~~~l~~~~~ 156 (169)
T d1ihga1 148 QAELLKVKQ 156 (169)
T ss_dssp HHHHHHHHH
T ss_pred HHHHHHHHH
Confidence 888877765
|
| >d2c2la1 a.118.8.1 (A:24-224) STIP1 homology and U box-containing protein 1, STUB1 {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: STIP1 homology and U box-containing protein 1, STUB1 species: Mouse (Mus musculus) [TaxId: 10090]
Probab=99.61 E-value=2.4e-15 Score=122.42 Aligned_cols=107 Identities=15% Similarity=0.084 Sum_probs=100.1
Q ss_pred ChHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCChHHHHHHHHHHHhhhcccccccccchhhhhHHHhcCCHHHHHHHH
Q 012143 199 NCDCIGNLGIAYFQSGDMEQSAKCFQDLILKDQNHPAALINYAALLLCKYGSVLAGAGANTGEGACLDQASAVNVAKECL 278 (470)
Q Consensus 199 ~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~ 278 (470)
+...+...|..++..|++++|+..|++++.++|.++.+|.++|.++. +.|++++|+..|
T Consensus 3 ~a~~l~~~Gn~~~~~g~~~~Ai~~~~kal~~~p~~~~~~~~lg~~y~---------------------~~~~~~~Ai~~~ 61 (201)
T d2c2la1 3 SAQELKEQGNRLFVGRKYPEAAACYGRAITRNPLVAVYYTNRALCYL---------------------KMQQPEQALADC 61 (201)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSCCHHHHHHHHHHHH---------------------HTTCHHHHHHHH
T ss_pred hHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHhHHHHHh---------------------hhhhhhhhhHHH
Confidence 35667899999999999999999999999999999999999999887 799999999999
Q ss_pred HHHHhcCCCCHHHHHHHHHHHHHcCChhHHHHHHHHHHhcCCCcccHH
Q 012143 279 LAALKADPKAAHIWANLANAYYLTGDHRSSGKCLEKAAKLEPNCMSTR 326 (470)
Q Consensus 279 ~~~~~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~p~~~~~~ 326 (470)
+++++++|+++.+|.++|.+|..+|++++|+..|++++.++|++...+
T Consensus 62 ~~al~l~p~~~~a~~~lg~~~~~l~~~~~A~~~~~~al~l~p~~~~~~ 109 (201)
T d2c2la1 62 RRALELDGQSVKAHFFLGQCQLEMESYDEAIANLQRAYSLAKEQRLNF 109 (201)
T ss_dssp HHHTTSCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCCC
T ss_pred HHHHHhCCCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCcccHHHH
Confidence 999999999999999999999999999999999999999988765443
|
| >d1elra_ a.118.8.1 (A:) Hop {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Hop species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.61 E-value=6.3e-15 Score=109.45 Aligned_cols=115 Identities=16% Similarity=0.163 Sum_probs=102.1
Q ss_pred hHHHHHHHHHHHHcCChHHHHHHHHHHhhcCCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCChHHHHHHHHHHH
Q 012143 166 AVVWNTLGLILLKSGRLQSSISVLSSLLAVDPNNCDCIGNLGIAYFQSGDMEQSAKCFQDLILKDQNHPAALINYAALLL 245 (470)
Q Consensus 166 ~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~l~~~~~ 245 (470)
+..+..+|..++..|+|++|+.+|+++++++|+++.++.++|.+|..+|++++|+..+++++.++|.++..+..++.++.
T Consensus 4 a~~~k~~G~~~~~~~~y~~Ai~~y~~al~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~l~~~~~~~~~~~a~~~~ 83 (128)
T d1elra_ 4 ALKEKELGNDAYKKKDFDTALKHYDKAKELDPTNMTYITNQAAVYFEKGDYNKCRELCEKAIEVGRENREDYRQIAKAYA 83 (128)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHSTTCHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcccHHHHHhHHHHHHHcCchHHHHHHHHHHHHhCcccHHHHHHHHHHHH
Confidence 34567899999999999999999999999999999999999999999999999999999999999999999988888876
Q ss_pred hhhcccccccccchhhhhHHHhcCCHHHHHHHHHHHHhcCCCCHHHHHHH
Q 012143 246 CKYGSVLAGAGANTGEGACLDQASAVNVAKECLLAALKADPKAAHIWANL 295 (470)
Q Consensus 246 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~l 295 (470)
. +|.++...+++++|+.+|++++..+|+ +.....+
T Consensus 84 ~--------------lg~~~~~~~~~~~A~~~~~kal~~~~~-~~~~~~l 118 (128)
T d1elra_ 84 R--------------IGNSYFKEEKYKDAIHFYNKSLAEHRT-PDVLKKC 118 (128)
T ss_dssp H--------------HHHHHHHTTCHHHHHHHHHHHHHHCCC-HHHHHHH
T ss_pred H--------------HHHHHHHhCCHHHHHHHHHHHHhcCCC-HHHHHHH
Confidence 4 588888899999999999998887775 4444444
|
| >d1p5qa1 a.118.8.1 (A:258-427) FKBP52 (FKBP4), C-terminal domain {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: FKBP52 (FKBP4), C-terminal domain species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.60 E-value=2.3e-14 Score=112.28 Aligned_cols=122 Identities=11% Similarity=0.127 Sum_probs=94.7
Q ss_pred hHHHHHHHHHHHHcCChHHHHHHHHHHhhcCCCCh---------------HHHHHHHHHHHHcCCHHHHHHHHHHHHhhC
Q 012143 166 AVVWNTLGLILLKSGRLQSSISVLSSLLAVDPNNC---------------DCIGNLGIAYFQSGDMEQSAKCFQDLILKD 230 (470)
Q Consensus 166 ~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~---------------~~~~~la~~~~~~g~~~~A~~~~~~~l~~~ 230 (470)
+..+...|..++..|+|++|+..|++++...|... .++.++|.+|.++|++++|+..+++++.++
T Consensus 13 a~~l~~~G~~~~~~~~~~~Ai~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~y~k~~~~~~A~~~~~~al~~~ 92 (170)
T d1p5qa1 13 STIVKERGTVYFKEGKYKQALLQYKKIVSWLEYESSFSNEEAQKAQALRLASHLNLAMCHLKLQAFSAAIESCNKALELD 92 (170)
T ss_dssp HHHHHHHHHHHHHHTCHHHHHHHHHHHHHHTTTCCCCCSHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhhccccchHHHhhhchhHHHHHHHHHHHHHhhhhcccccchhhhhhhcc
Confidence 45667789999999999999999999998877542 356677788888888888888888888888
Q ss_pred CCChHHHHHHHHHHHhhhcccccccccchhhhhHHHhcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCChhHH
Q 012143 231 QNHPAALINYAALLLCKYGSVLAGAGANTGEGACLDQASAVNVAKECLLAALKADPKAAHIWANLANAYYLTGDHRSS 308 (470)
Q Consensus 231 p~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~la~~~~~~g~~~~A 308 (470)
|+++.+++.+|.++. ..|++++|+..|+++++++|+++.+...++.+....+...+.
T Consensus 93 p~~~~a~~~~g~~~~---------------------~~g~~~~A~~~~~~al~l~P~n~~~~~~l~~~~~~~~~~~~~ 149 (170)
T d1p5qa1 93 SNNEKGLSRRGEAHL---------------------AVNDFELARADFQKVLQLYPNNKAAKTQLAVCQQRIRRQLAR 149 (170)
T ss_dssp TTCHHHHHHHHHHHH---------------------HTTCHHHHHHHHHHHHHHCSSCHHHHHHHHHHHHHHHHHHHH
T ss_pred ccchhhhHHHHHHHH---------------------HhhhHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHH
Confidence 888877777777766 677888888888888888888887777777777666555443
|
| >d1p5qa1 a.118.8.1 (A:258-427) FKBP52 (FKBP4), C-terminal domain {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: FKBP52 (FKBP4), C-terminal domain species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.58 E-value=1.3e-13 Score=107.91 Aligned_cols=129 Identities=20% Similarity=0.144 Sum_probs=106.4
Q ss_pred hhHHHHHHHHHHHhCChhHHHHHHHHHHHHHhhhhcccchhhhHHHHHHhhhccccccccCCCccccccCcccHHHHHHH
Q 012143 75 AHAHFLLGLMYQRLGQPLKAVSSYEKAEEILLRCEADIARPELLSLVQIHHAQCLLPESSGDNSLDKELEPEELEEILSK 154 (470)
Q Consensus 75 ~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~ 154 (470)
+..+...|..++..|++++|+..|.+++...|...... ........
T Consensus 13 a~~l~~~G~~~~~~~~~~~Ai~~y~~al~~~~~~~~~~---------------------------------~~~~~~~~- 58 (170)
T d1p5qa1 13 STIVKERGTVYFKEGKYKQALLQYKKIVSWLEYESSFS---------------------------------NEEAQKAQ- 58 (170)
T ss_dssp HHHHHHHHHHHHHHTCHHHHHHHHHHHHHHTTTCCCCC---------------------------------SHHHHHHH-
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhhccccc---------------------------------hHHHhhhc-
Confidence 45667889999999999999999999999865432110 00011111
Q ss_pred HHHhhhcCccchHHHHHHHHHHHHcCChHHHHHHHHHHhhcCCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCh
Q 012143 155 LKESMQSDTRQAVVWNTLGLILLKSGRLQSSISVLSSLLAVDPNNCDCIGNLGIAYFQSGDMEQSAKCFQDLILKDQNHP 234 (470)
Q Consensus 155 ~~~~~~~~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~ 234 (470)
+-...++.++|.+|..+|++++|+..+++++.++|+++.+++.+|.++..+|++++|+..|+++++++|+++
T Consensus 59 --------~~~~~~~~nla~~y~k~~~~~~A~~~~~~al~~~p~~~~a~~~~g~~~~~~g~~~~A~~~~~~al~l~P~n~ 130 (170)
T d1p5qa1 59 --------ALRLASHLNLAMCHLKLQAFSAAIESCNKALELDSNNEKGLSRRGEAHLAVNDFELARADFQKVLQLYPNNK 130 (170)
T ss_dssp --------HHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSSCH
T ss_pred --------hhHHHHHHHHHHHHHhhhhcccccchhhhhhhccccchhhhHHHHHHHHHhhhHHHHHHHHHHHHHhCCCCH
Confidence 112346788999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHH
Q 012143 235 AALINYAALLL 245 (470)
Q Consensus 235 ~~~~~l~~~~~ 245 (470)
.+...++.+..
T Consensus 131 ~~~~~l~~~~~ 141 (170)
T d1p5qa1 131 AAKTQLAVCQQ 141 (170)
T ss_dssp HHHHHHHHHHH
T ss_pred HHHHHHHHHHH
Confidence 99888888765
|
| >d1hxia_ a.118.8.1 (A:) Peroxin pex5 (peroxisomal targeting signal 1 (PTS1) receptor) {Trypanosoma brucei [TaxId: 5691]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Peroxin pex5 (peroxisomal targeting signal 1 (PTS1) receptor) species: Trypanosoma brucei [TaxId: 5691]
Probab=99.57 E-value=1.6e-14 Score=104.31 Aligned_cols=77 Identities=14% Similarity=0.118 Sum_probs=47.5
Q ss_pred HHHHHHHHHHcCChHHHHHHHHHHhhcCCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCChHHHHHHHHHHH
Q 012143 169 WNTLGLILLKSGRLQSSISVLSSLLAVDPNNCDCIGNLGIAYFQSGDMEQSAKCFQDLILKDQNHPAALINYAALLL 245 (470)
Q Consensus 169 ~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~l~~~~~ 245 (470)
++.+|.++.+.|++++|+..|++++..+|+++.+|..+|.++...|++++|+..|+++++++|+++.++..+|.++.
T Consensus 19 ~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~a~~~la~~y~ 95 (112)
T d1hxia_ 19 PMEEGLSMLKLANLAEAALAFEAVCQKEPEREEAWRSLGLTQAENEKDGLAIIALNHARMLDPKDIAVHAALAVSHT 95 (112)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhhhHHHHHHHhhhcccccccchhhhhhhhhhhhhhhHHHhhcccccccccccccccchHHHHHHHH
Confidence 45556666666666666666666666666666666666666666666666666666666666666666665555555
|
| >d1hxia_ a.118.8.1 (A:) Peroxin pex5 (peroxisomal targeting signal 1 (PTS1) receptor) {Trypanosoma brucei [TaxId: 5691]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Peroxin pex5 (peroxisomal targeting signal 1 (PTS1) receptor) species: Trypanosoma brucei [TaxId: 5691]
Probab=99.57 E-value=1.6e-14 Score=104.31 Aligned_cols=86 Identities=15% Similarity=0.252 Sum_probs=84.4
Q ss_pred ccCcccHHHHHHHHHHhhhcCccchHHHHHHHHHHHHcCChHHHHHHHHHHhhcCCCChHHHHHHHHHHHHcCCHHHHHH
Q 012143 142 ELEPEELEEILSKLKESMQSDTRQAVVWNTLGLILLKSGRLQSSISVLSSLLAVDPNNCDCIGNLGIAYFQSGDMEQSAK 221 (470)
Q Consensus 142 ~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~la~~~~~~g~~~~A~~ 221 (470)
+++.|++++|+..|++++..+|+++.+|..+|.++...|++++|+.+|+++++++|+++.++..+|.+|..+|++++|++
T Consensus 26 ~~~~g~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~a~~~la~~y~~~g~~~~A~~ 105 (112)
T d1hxia_ 26 MLKLANLAEAALAFEAVCQKEPEREEAWRSLGLTQAENEKDGLAIIALNHARMLDPKDIAVHAALAVSHTNEHNANAALA 105 (112)
T ss_dssp HHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHhhhHHHHHHHhhhcccccccchhhhhhhhhhhhhhhHHHhhcccccccccccccccchHHHHHHHHHCCCHHHHHH
Confidence 78999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHH
Q 012143 222 CFQDLI 227 (470)
Q Consensus 222 ~~~~~l 227 (470)
.+++.+
T Consensus 106 ~l~~~l 111 (112)
T d1hxia_ 106 SLRAWL 111 (112)
T ss_dssp HHHHHH
T ss_pred HHHHHh
Confidence 999976
|
| >d1zu2a1 a.118.8.1 (A:1-145) Mitochondrial import receptor subunit tom20-3 {Thale cress (Arabidopsis thaliana) [TaxId: 3702]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Mitochondrial import receptor subunit tom20-3 species: Thale cress (Arabidopsis thaliana) [TaxId: 3702]
Probab=99.56 E-value=9.7e-15 Score=110.75 Aligned_cols=119 Identities=13% Similarity=0.128 Sum_probs=101.3
Q ss_pred ccchhhhhcChhhHHHHHHHHHHhCCCChhHHHHHHHHHHHhCChhHHHHHHHHHHHHHhhhhcccchhhhHHHHHHhhh
Q 012143 47 GTSSSSREEKVSSLKTGLVHVARKMPKNAHAHFLLGLMYQRLGQPLKAVSSYEKAEEILLRCEADIARPELLSLVQIHHA 126 (470)
Q Consensus 47 ~~~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~ 126 (470)
+.. +.+.+.+++|+..|+++++.+|+++++++.+|.++...+++..+.+...
T Consensus 4 ~~~-~~r~~~fe~A~~~~e~al~~~P~~~~~~~~~g~~l~~~~~~~~~~e~~~--------------------------- 55 (145)
T d1zu2a1 4 ETE-FDRILLFEQIRQDAENTYKSNPLDADNLTRWGGVLLELSQFHSISDAKQ--------------------------- 55 (145)
T ss_dssp CCS-HHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHHHSCHHHHHH---------------------------
T ss_pred hHH-HHHHccHHHHHHHHHHHHhhCCcchHHHHHHHHHHHHhhhhhhhhHHHH---------------------------
Confidence 444 6778889999999999999999999999999999999888877765332
Q ss_pred ccccccccCCCccccccCcccHHHHHHHHHHhhhcCccchHHHHHHHHHHHHcCC-----------hHHHHHHHHHHhhc
Q 012143 127 QCLLPESSGDNSLDKELEPEELEEILSKLKESMQSDTRQAVVWNTLGLILLKSGR-----------LQSSISVLSSLLAV 195 (470)
Q Consensus 127 ~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~~~-----------~~~A~~~~~~a~~~ 195 (470)
.+++|+..|+++++++|+++.+++++|.+|..+|+ +.+|+++|++++++
T Consensus 56 --------------------~~~~Ai~~~~kAl~l~P~~~~a~~~lG~~y~~~g~~~~~~~~~~~~~~~A~~~~~kal~l 115 (145)
T d1zu2a1 56 --------------------MIQEAITKFEEALLIDPKKDEAVWCIGNAYTSFAFLTPDETEAKHNFDLATQFFQQAVDE 115 (145)
T ss_dssp --------------------HHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHH
T ss_pred --------------------HHHHHHHHHHHHHHhcchhhHHHhhHHHHHHHcccchhhHHHHHHhHHHhhhhhhccccc
Confidence 24889999999999999999999999999988764 68888889999999
Q ss_pred CCCChHHHHHHHHHHHHc
Q 012143 196 DPNNCDCIGNLGIAYFQS 213 (470)
Q Consensus 196 ~~~~~~~~~~la~~~~~~ 213 (470)
+|++...+..++.+....
T Consensus 116 ~P~~~~~~~~L~~~~ka~ 133 (145)
T d1zu2a1 116 QPDNTHYLKSLEMTAKAP 133 (145)
T ss_dssp CTTCHHHHHHHHHHHTHH
T ss_pred CCCHHHHHHHHHHHHHHH
Confidence 998888888888775333
|
| >d1kt1a1 a.118.8.1 (A:254-421) FKBP51, C-terminal domain {Monkey (Saimiri boliviensis) [TaxId: 27679]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: FKBP51, C-terminal domain species: Monkey (Saimiri boliviensis) [TaxId: 27679]
Probab=99.55 E-value=1.3e-13 Score=107.73 Aligned_cols=131 Identities=13% Similarity=0.193 Sum_probs=108.3
Q ss_pred hHHHHHHHHHHHHcCChHHHHHHHHHHhhcCCCC---------------hHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC
Q 012143 166 AVVWNTLGLILLKSGRLQSSISVLSSLLAVDPNN---------------CDCIGNLGIAYFQSGDMEQSAKCFQDLILKD 230 (470)
Q Consensus 166 ~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~---------------~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~ 230 (470)
+..+...|..++..|+|.+|+..|++++...|.. ..++.++|.||..+|++++|+..+++++.++
T Consensus 15 a~~~~e~G~~~~~~~~~~~A~~~Y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~Nla~~~~~l~~~~~Ai~~~~~al~l~ 94 (168)
T d1kt1a1 15 AAIVKEKGTVYFKGGKYVQAVIQYGKIVSWLEMEYGLSEKESKASESFLLAAFLNLAMCYLKLREYTKAVECCDKALGLD 94 (168)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHTTCCSCCHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhhccchhhhhhcchhHHHHHHhHHHHHHHhhhcccchhhhhhhhhcc
Confidence 4567788999999999999999999999764432 2357789999999999999999999999999
Q ss_pred CCChHHHHHHHHHHHhhhcccccccccchhhhhHHHhcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCChhH-HH
Q 012143 231 QNHPAALINYAALLLCKYGSVLAGAGANTGEGACLDQASAVNVAKECLLAALKADPKAAHIWANLANAYYLTGDHRS-SG 309 (470)
Q Consensus 231 p~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~la~~~~~~g~~~~-A~ 309 (470)
|++..+++.+|.++. ..|++++|+..|.+++.++|+++.++..++.+....+.+.+ ..
T Consensus 95 p~~~~a~~~~~~~~~---------------------~l~~~~~A~~~~~~al~l~P~n~~~~~~l~~~~~~~~~~~e~~k 153 (168)
T d1kt1a1 95 SANEKGLYRRGEAQL---------------------LMNEFESAKGDFEKVLEVNPQNKAARLQIFMCQKKAKEHNERDR 153 (168)
T ss_dssp TTCHHHHHHHHHHHH---------------------HTTCHHHHHHHHHHHHHSCTTCHHHHHHHHHHHHHHHHHHHHHH
T ss_pred cchHHHHHHHHHHHH---------------------HcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHhHHHHHH
Confidence 999999998888887 68999999999999999999999999999888877766543 44
Q ss_pred HHHHHHHh
Q 012143 310 KCLEKAAK 317 (470)
Q Consensus 310 ~~~~~a~~ 317 (470)
..|.+.++
T Consensus 154 k~~~~~f~ 161 (168)
T d1kt1a1 154 RTYANMFK 161 (168)
T ss_dssp HHHHHHHH
T ss_pred HHHHHHHh
Confidence 45555444
|
| >d2fbna1 a.118.8.1 (A:22-174) Putative 70 kda peptidylprolyl isomerase PFL2275c {Plasmodium falciparum [TaxId: 5833]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Putative 70 kda peptidylprolyl isomerase PFL2275c species: Plasmodium falciparum [TaxId: 5833]
Probab=99.55 E-value=8e-14 Score=107.00 Aligned_cols=114 Identities=18% Similarity=0.167 Sum_probs=70.0
Q ss_pred hHHHHHHHHHHHHcCChHHHHHHHHHHhhcCCCCh----------------HHHHHHHHHHHHcCCHHHHHHHHHHHHhh
Q 012143 166 AVVWNTLGLILLKSGRLQSSISVLSSLLAVDPNNC----------------DCIGNLGIAYFQSGDMEQSAKCFQDLILK 229 (470)
Q Consensus 166 ~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~----------------~~~~~la~~~~~~g~~~~A~~~~~~~l~~ 229 (470)
+..+...|..++..|+|.+|+..|++++...|... .++.++|.+|..+|++++|+..+++++++
T Consensus 17 a~~~~~~G~~~f~~~~y~~A~~~Y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~Nla~~~~~l~~~~~Al~~~~~al~~ 96 (153)
T d2fbna1 17 AFDIKEEGNEFFKKNEINEAIVKYKEALDFFIHTEEWDDQILLDKKKNIEISCNLNLATCYNKNKDYPKAIDHASKVLKI 96 (153)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTTTCTTCCCHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCcchhhhhhHHHHHhhhhHHHHHHhhHHHHHHHhcccchhhhhhhccccc
Confidence 34566788999999999999999999998755432 23445555555555555555555555555
Q ss_pred CCCChHHHHHHHHHHHhhhcccccccccchhhhhHHHhcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHH
Q 012143 230 DQNHPAALINYAALLLCKYGSVLAGAGANTGEGACLDQASAVNVAKECLLAALKADPKAAHIWANLANAYY 300 (470)
Q Consensus 230 ~p~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~la~~~~ 300 (470)
+|.+..+++.+|.++. ..|++++|+..|+++++++|++..+...++.+..
T Consensus 97 ~p~~~ka~~~~g~~~~---------------------~lg~~~~A~~~~~~al~l~P~n~~~~~~l~~~~~ 146 (153)
T d2fbna1 97 DKNNVKALYKLGVANM---------------------YFGFLEEAKENLYKAASLNPNNLDIRNSYELCVN 146 (153)
T ss_dssp STTCHHHHHHHHHHHH---------------------HHTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHH
T ss_pred cchhhhhhHHhHHHHH---------------------HcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHH
Confidence 5555555555555544 4555555555555555555555555555544443
|
| >d2fbna1 a.118.8.1 (A:22-174) Putative 70 kda peptidylprolyl isomerase PFL2275c {Plasmodium falciparum [TaxId: 5833]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Putative 70 kda peptidylprolyl isomerase PFL2275c species: Plasmodium falciparum [TaxId: 5833]
Probab=99.55 E-value=1.1e-13 Score=106.26 Aligned_cols=129 Identities=18% Similarity=0.160 Sum_probs=104.3
Q ss_pred hHHHHHHHHHHHhCChhHHHHHHHHHHHHHhhhhcccchhhhHHHHHHhhhccccccccCCCccccccCcccHHHHHHHH
Q 012143 76 HAHFLLGLMYQRLGQPLKAVSSYEKAEEILLRCEADIARPELLSLVQIHHAQCLLPESSGDNSLDKELEPEELEEILSKL 155 (470)
Q Consensus 76 ~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~ 155 (470)
..+...|..++..|+|.+|+..|.+++...|...... +......
T Consensus 18 ~~~~~~G~~~f~~~~y~~A~~~Y~~al~~~~~~~~~~------------------------------------~~~~~~~ 61 (153)
T d2fbna1 18 FDIKEEGNEFFKKNEINEAIVKYKEALDFFIHTEEWD------------------------------------DQILLDK 61 (153)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHTTTTCTTCC------------------------------------CHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHhhCcchhhhh------------------------------------hHHHHHh
Confidence 4566689999999999999999999998654321110 1111111
Q ss_pred HHhhhcCccchHHHHHHHHHHHHcCChHHHHHHHHHHhhcCCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCChH
Q 012143 156 KESMQSDTRQAVVWNTLGLILLKSGRLQSSISVLSSLLAVDPNNCDCIGNLGIAYFQSGDMEQSAKCFQDLILKDQNHPA 235 (470)
Q Consensus 156 ~~~~~~~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~ 235 (470)
... ....++.++|.+|..+|++++|+..++++++++|.+..+++.+|.++..+|++++|+..|+++++++|++..
T Consensus 62 ~~~-----~~~~~~~Nla~~~~~l~~~~~Al~~~~~al~~~p~~~ka~~~~g~~~~~lg~~~~A~~~~~~al~l~P~n~~ 136 (153)
T d2fbna1 62 KKN-----IEISCNLNLATCYNKNKDYPKAIDHASKVLKIDKNNVKALYKLGVANMYFGFLEEAKENLYKAASLNPNNLD 136 (153)
T ss_dssp HHH-----HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHSTTCHH
T ss_pred hhh-----HHHHHHhhHHHHHHHhcccchhhhhhhccccccchhhhhhHHhHHHHHHcCCHHHHHHHHHHHHHhCCCCHH
Confidence 111 123577899999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHH
Q 012143 236 ALINYAALLL 245 (470)
Q Consensus 236 ~~~~l~~~~~ 245 (470)
+...+..+..
T Consensus 137 ~~~~l~~~~~ 146 (153)
T d2fbna1 137 IRNSYELCVN 146 (153)
T ss_dssp HHHHHHHHHH
T ss_pred HHHHHHHHHH
Confidence 9888776654
|
| >d1nzna_ a.118.8.1 (A:) Mitochondria fission protein Fis1 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Mitochondria fission protein Fis1 species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.55 E-value=1.4e-14 Score=105.72 Aligned_cols=104 Identities=13% Similarity=0.161 Sum_probs=93.2
Q ss_pred ccCcccHHHHHHHHHHhhhcCccchHHHHHHHHHHHHcC---ChHHHHHHHHHHhhcCCCC--hHHHHHHHHHHHHcCCH
Q 012143 142 ELEPEELEEILSKLKESMQSDTRQAVVWNTLGLILLKSG---RLQSSISVLSSLLAVDPNN--CDCIGNLGIAYFQSGDM 216 (470)
Q Consensus 142 ~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~~---~~~~A~~~~~~a~~~~~~~--~~~~~~la~~~~~~g~~ 216 (470)
+...+++++|.+.|++++..+|.++.+++++|.++...+ ++++|+..|++++..+|.+ ..+++.+|.+|..+|++
T Consensus 9 ~~~~~~l~~Ae~~Y~~aL~~~p~~~~~~~n~a~~L~~s~~~~d~~~Ai~~l~~~l~~~~~~~~~~~~~~Lg~~y~~~g~~ 88 (122)
T d1nzna_ 9 LVSVEDLLKFEKKFQSEKAAGSVSKSTQFEYAWCLVRTRYNDDIRKGIVLLEELLPKGSKEEQRDYVFYLAVGNYRLKEY 88 (122)
T ss_dssp HHHHHHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHTTSSSHHHHHHHHHHHHHHTTTSCHHHHHHHHHHHHHHHHHTTCH
T ss_pred hcCHHHHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHhccCCchHHHHHHHHHHHHHHHhhh
Confidence 456788999999999999999999999999999998755 4567999999999988765 45899999999999999
Q ss_pred HHHHHHHHHHHhhCCCChHHHHHHHHHHH
Q 012143 217 EQSAKCFQDLILKDQNHPAALINYAALLL 245 (470)
Q Consensus 217 ~~A~~~~~~~l~~~p~~~~~~~~l~~~~~ 245 (470)
++|+.+|+++++++|++..+...++.+..
T Consensus 89 ~~A~~~~~~aL~~~P~~~~A~~l~~~I~~ 117 (122)
T d1nzna_ 89 EKALKYVRGLLQTEPQNNQAKELERLIDK 117 (122)
T ss_dssp HHHHHHHHHHHHHCTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhCcCCHHHHHHHHHHHH
Confidence 99999999999999999999887776654
|
| >d1kt1a1 a.118.8.1 (A:254-421) FKBP51, C-terminal domain {Monkey (Saimiri boliviensis) [TaxId: 27679]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: FKBP51, C-terminal domain species: Monkey (Saimiri boliviensis) [TaxId: 27679]
Probab=99.54 E-value=4.5e-13 Score=104.64 Aligned_cols=129 Identities=17% Similarity=0.128 Sum_probs=106.2
Q ss_pred hhHHHHHHHHHHHhCChhHHHHHHHHHHHHHhhhhcccchhhhHHHHHHhhhccccccccCCCccccccCcccHHHHHHH
Q 012143 75 AHAHFLLGLMYQRLGQPLKAVSSYEKAEEILLRCEADIARPELLSLVQIHHAQCLLPESSGDNSLDKELEPEELEEILSK 154 (470)
Q Consensus 75 ~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~ 154 (470)
+..+...|..++..|++.+|+..|.+++...|..... ........
T Consensus 15 a~~~~e~G~~~~~~~~~~~A~~~Y~~al~~~~~~~~~---------------------------------~~~~~~~~-- 59 (168)
T d1kt1a1 15 AAIVKEKGTVYFKGGKYVQAVIQYGKIVSWLEMEYGL---------------------------------SEKESKAS-- 59 (168)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHTTCCSC---------------------------------CHHHHHHH--
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhhcc---------------------------------chhhhhhc--
Confidence 4567778999999999999999999999875432110 00001111
Q ss_pred HHHhhhcCccchHHHHHHHHHHHHcCChHHHHHHHHHHhhcCCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCh
Q 012143 155 LKESMQSDTRQAVVWNTLGLILLKSGRLQSSISVLSSLLAVDPNNCDCIGNLGIAYFQSGDMEQSAKCFQDLILKDQNHP 234 (470)
Q Consensus 155 ~~~~~~~~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~ 234 (470)
.+....++.++|.||..+|++++|+..+++++.++|++..+++.+|.++..+|++++|+..|++++.++|+++
T Consensus 60 -------~~~~~~~~~Nla~~~~~l~~~~~Ai~~~~~al~l~p~~~~a~~~~~~~~~~l~~~~~A~~~~~~al~l~P~n~ 132 (168)
T d1kt1a1 60 -------ESFLLAAFLNLAMCYLKLREYTKAVECCDKALGLDSANEKGLYRRGEAQLLMNEFESAKGDFEKVLEVNPQNK 132 (168)
T ss_dssp -------HHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHSCTTCH
T ss_pred -------chhHHHHHHhHHHHHHHhhhcccchhhhhhhhhcccchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCH
Confidence 1222457788999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHH
Q 012143 235 AALINYAALLL 245 (470)
Q Consensus 235 ~~~~~l~~~~~ 245 (470)
.+...++.+..
T Consensus 133 ~~~~~l~~~~~ 143 (168)
T d1kt1a1 133 AARLQIFMCQK 143 (168)
T ss_dssp HHHHHHHHHHH
T ss_pred HHHHHHHHHHH
Confidence 99888887765
|
| >d1ihga1 a.118.8.1 (A:197-365) Cyclophilin 40 {Cow (Bos taurus) [TaxId: 9913]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Cyclophilin 40 species: Cow (Bos taurus) [TaxId: 9913]
Probab=99.54 E-value=6.3e-14 Score=109.89 Aligned_cols=115 Identities=18% Similarity=0.176 Sum_probs=67.5
Q ss_pred HHHHHHHHHHHcCChHHHHHHHHHHhhcC----------------CCChHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCC
Q 012143 168 VWNTLGLILLKSGRLQSSISVLSSLLAVD----------------PNNCDCIGNLGIAYFQSGDMEQSAKCFQDLILKDQ 231 (470)
Q Consensus 168 ~~~~l~~~~~~~~~~~~A~~~~~~a~~~~----------------~~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p 231 (470)
.+...|..++..|+|.+|+..|.++++.. |....++.++|.++.++|++++|+..+.++++++|
T Consensus 29 ~~~~~~~~~~~~~~y~~Ai~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~~~~~~~Ai~~~~~al~~~p 108 (169)
T d1ihga1 29 DLKNIGNTFFKSQNWEMAIKKYTKVLRYVEGSRAAAEDADGAKLQPVALSCVLNIGACKLKMSDWQGAVDSCLEALEIDP 108 (169)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHHSCHHHHGGGHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCT
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHhhhhhhhhhhhHHHHHhChhhHHHHHHHHHHHHhhcccchhhhhhhhhhhhhh
Confidence 34567899999999999999999988642 22333445555555555555555555555555555
Q ss_pred CChHHHHHHHHHHHhhhcccccccccchhhhhHHHhcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcC
Q 012143 232 NHPAALINYAALLLCKYGSVLAGAGANTGEGACLDQASAVNVAKECLLAALKADPKAAHIWANLANAYYLTG 303 (470)
Q Consensus 232 ~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~la~~~~~~g 303 (470)
+++.+++.+|.++. ..|++++|+..|+++++++|++..+...++.+.....
T Consensus 109 ~~~~a~~~~g~~~~---------------------~l~~~~~A~~~~~~al~l~p~n~~~~~~l~~~~~~l~ 159 (169)
T d1ihga1 109 SNTKALYRRAQGWQ---------------------GLKEYDQALADLKKAQEIAPEDKAIQAELLKVKQKIK 159 (169)
T ss_dssp TCHHHHHHHHHHHH---------------------HTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHH
T ss_pred hhhhHHHhHHHHHH---------------------HccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHH
Confidence 55555555544444 3555555555555555555555555555554444433
|
| >d1nzna_ a.118.8.1 (A:) Mitochondria fission protein Fis1 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Mitochondria fission protein Fis1 species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.52 E-value=4.8e-14 Score=102.78 Aligned_cols=107 Identities=10% Similarity=-0.003 Sum_probs=53.4
Q ss_pred HHHHHHHcCChHHHHHHHHHHhhcCCCChHHHHHHHHHHHHcC---CHHHHHHHHHHHHhhCCCC--hHHHHHHHHHHHh
Q 012143 172 LGLILLKSGRLQSSISVLSSLLAVDPNNCDCIGNLGIAYFQSG---DMEQSAKCFQDLILKDQNH--PAALINYAALLLC 246 (470)
Q Consensus 172 l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~la~~~~~~g---~~~~A~~~~~~~l~~~p~~--~~~~~~l~~~~~~ 246 (470)
++..+...+++++|.+.|++++..+|.++.+++++|.++...+ ++++|+..|++++..+|.+ ..+++.+|.++.
T Consensus 5 l~n~~~~~~~l~~Ae~~Y~~aL~~~p~~~~~~~n~a~~L~~s~~~~d~~~Ai~~l~~~l~~~~~~~~~~~~~~Lg~~y~- 83 (122)
T d1nzna_ 5 VLNELVSVEDLLKFEKKFQSEKAAGSVSKSTQFEYAWCLVRTRYNDDIRKGIVLLEELLPKGSKEEQRDYVFYLAVGNY- 83 (122)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHTTSSSHHHHHHHHHHHHHHTTTSCHHHHHHHHHHHHHHHH-
T ss_pred HHHHhcCHHHHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHhccCCchHHHHHHHHHHHHH-
Confidence 3444455555555555555555555555555555555554432 2334555555555544432 224444444443
Q ss_pred hhcccccccccchhhhhHHHhcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHH
Q 012143 247 KYGSVLAGAGANTGEGACLDQASAVNVAKECLLAALKADPKAAHIWANLANAY 299 (470)
Q Consensus 247 ~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~la~~~ 299 (470)
+.|++++|+.+|+++++++|++..+...++.+.
T Consensus 84 --------------------~~g~~~~A~~~~~~aL~~~P~~~~A~~l~~~I~ 116 (122)
T d1nzna_ 84 --------------------RLKEYEKALKYVRGLLQTEPQNNQAKELERLID 116 (122)
T ss_dssp --------------------HTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHH
T ss_pred --------------------HHhhhHHHHHHHHHHHHhCcCCHHHHHHHHHHH
Confidence 455555555555555555555555544444443
|
| >d1zu2a1 a.118.8.1 (A:1-145) Mitochondrial import receptor subunit tom20-3 {Thale cress (Arabidopsis thaliana) [TaxId: 3702]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Mitochondrial import receptor subunit tom20-3 species: Thale cress (Arabidopsis thaliana) [TaxId: 3702]
Probab=99.52 E-value=3.4e-14 Score=107.71 Aligned_cols=104 Identities=17% Similarity=0.186 Sum_probs=93.3
Q ss_pred ccCcccHHHHHHHHHHhhhcCccchHHHHHHHHHHHHc----------CChHHHHHHHHHHhhcCCCChHHHHHHHHHHH
Q 012143 142 ELEPEELEEILSKLKESMQSDTRQAVVWNTLGLILLKS----------GRLQSSISVLSSLLAVDPNNCDCIGNLGIAYF 211 (470)
Q Consensus 142 ~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~----------~~~~~A~~~~~~a~~~~~~~~~~~~~la~~~~ 211 (470)
+-+.+.|++|+..|+++++.+|+++.+++.+|.++... +.+++|+..|+++++++|+++.+++++|.+|.
T Consensus 7 ~~r~~~fe~A~~~~e~al~~~P~~~~~~~~~g~~l~~~~~~~~~~e~~~~~~~Ai~~~~kAl~l~P~~~~a~~~lG~~y~ 86 (145)
T d1zu2a1 7 FDRILLFEQIRQDAENTYKSNPLDADNLTRWGGVLLELSQFHSISDAKQMIQEAITKFEEALLIDPKKDEAVWCIGNAYT 86 (145)
T ss_dssp HHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHH
T ss_pred HHHHccHHHHHHHHHHHHhhCCcchHHHHHHHHHHHHhhhhhhhhHHHHHHHHHHHHHHHHHHhcchhhHHHhhHHHHHH
Confidence 45678899999999999999999999999999999854 55688999999999999999999999999998
Q ss_pred HcCC-----------HHHHHHHHHHHHhhCCCChHHHHHHHHHHH
Q 012143 212 QSGD-----------MEQSAKCFQDLILKDQNHPAALINYAALLL 245 (470)
Q Consensus 212 ~~g~-----------~~~A~~~~~~~l~~~p~~~~~~~~l~~~~~ 245 (470)
.+|+ +++|++.|++++.++|++...+..++.+..
T Consensus 87 ~~g~~~~~~~~~~~~~~~A~~~~~kal~l~P~~~~~~~~L~~~~k 131 (145)
T d1zu2a1 87 SFAFLTPDETEAKHNFDLATQFFQQAVDEQPDNTHYLKSLEMTAK 131 (145)
T ss_dssp HHHHHCCCHHHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHT
T ss_pred HcccchhhHHHHHHhHHHhhhhhhcccccCCCHHHHHHHHHHHHH
Confidence 8764 799999999999999999998887776643
|
| >d1ouva_ a.118.18.1 (A:) Cysteine rich protein C (HcpC) {Helicobacter pylori [TaxId: 210]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: HCP-like family: HCP-like domain: Cysteine rich protein C (HcpC) species: Helicobacter pylori [TaxId: 210]
Probab=99.52 E-value=7.6e-12 Score=106.04 Aligned_cols=31 Identities=19% Similarity=0.143 Sum_probs=27.0
Q ss_pred ChhHHHHHHHHHHHhCChhHHHHHHHHHHHH
Q 012143 74 NAHAHFLLGLMYQRLGQPLKAVSSYEKAEEI 104 (470)
Q Consensus 74 ~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~ 104 (470)
||.+++.||..+...|++++|+.+|+++.+.
T Consensus 1 ~p~~~~~lG~~~~~~~d~~~A~~~~~kAa~~ 31 (265)
T d1ouva_ 1 DPKELVGLGAKSYKEKDFTQAKKYFEKACDL 31 (265)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHT
T ss_pred CHHHHHHHHHHHHHCCCHHHHHHHHHHHHHC
Confidence 5788999999999999999999999988653
|
| >d1elra_ a.118.8.1 (A:) Hop {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Hop species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.45 E-value=3.9e-13 Score=99.56 Aligned_cols=101 Identities=15% Similarity=0.182 Sum_probs=91.6
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCChHHHHHHHHHHHhhhcccccccccchhhhhHHHhcCCHHHHHHHHHH
Q 012143 201 DCIGNLGIAYFQSGDMEQSAKCFQDLILKDQNHPAALINYAALLLCKYGSVLAGAGANTGEGACLDQASAVNVAKECLLA 280 (470)
Q Consensus 201 ~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~ 280 (470)
..+..+|..++..|+|++|+.+|++++.++|+++.++.++|.++. ..|++++|+..+++
T Consensus 5 ~~~k~~G~~~~~~~~y~~Ai~~y~~al~~~p~~~~~~~~~a~~~~---------------------~~~~~~~A~~~~~~ 63 (128)
T d1elra_ 5 LKEKELGNDAYKKKDFDTALKHYDKAKELDPTNMTYITNQAAVYF---------------------EKGDYNKCRELCEK 63 (128)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHH---------------------HHTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcccHHHHHhHHHHHH---------------------HcCchHHHHHHHHH
Confidence 456789999999999999999999999999999999999999888 79999999999999
Q ss_pred HHhcCCCCH-------HHHHHHHHHHHHcCChhHHHHHHHHHHhcCCCc
Q 012143 281 ALKADPKAA-------HIWANLANAYYLTGDHRSSGKCLEKAAKLEPNC 322 (470)
Q Consensus 281 ~~~~~p~~~-------~~~~~la~~~~~~g~~~~A~~~~~~a~~~~p~~ 322 (470)
+++++|.++ .++..+|.++..++++++|+.+|++++..+|+.
T Consensus 64 al~l~~~~~~~~~~~a~~~~~lg~~~~~~~~~~~A~~~~~kal~~~~~~ 112 (128)
T d1elra_ 64 AIEVGRENREDYRQIAKAYARIGNSYFKEEKYKDAIHFYNKSLAEHRTP 112 (128)
T ss_dssp HHHHHHHSTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCCH
T ss_pred HHHhCcccHHHHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHhcCCCH
Confidence 999988764 467778888899999999999999999987763
|
| >d1tjca_ a.118.8.1 (A:) Prolyl 4-hydroxylase alpha-1 subunit, P4HA1 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Prolyl 4-hydroxylase alpha-1 subunit, P4HA1 species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.26 E-value=1.9e-11 Score=84.70 Aligned_cols=80 Identities=18% Similarity=0.135 Sum_probs=72.1
Q ss_pred hHHHHHHHHHHHHcCChHHHHHHHHHHhhcCCCC-------hHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCChHHHH
Q 012143 166 AVVWNTLGLILLKSGRLQSSISVLSSLLAVDPNN-------CDCIGNLGIAYFQSGDMEQSAKCFQDLILKDQNHPAALI 238 (470)
Q Consensus 166 ~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~-------~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~ 238 (470)
++-++.+|.++...|+|.+|+.+|++++++.|.+ ..++.++|.++.++|++++|+..|+++++++|+++.++.
T Consensus 5 addc~~lG~~~~~~g~y~~A~~~~~~Al~~~~~~~~~~~~~~~~l~~Lg~~~~~~g~~~~A~~~y~~aL~l~P~~~~a~~ 84 (95)
T d1tjca_ 5 AEDSFELGKVAYTEADYYHTELWMEQALRQLDEGEISTIDKVSVLDYLSYAVYQQGDLDKALLLTKKLLELDPEHQRANG 84 (95)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTTCCCSSCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHH
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHhhhhccCccHHHHHHHHhhHHHhcCChHHHHHHHHHHHHhCcCCHHHHH
Confidence 5567899999999999999999999999875543 578999999999999999999999999999999999999
Q ss_pred HHHHHHH
Q 012143 239 NYAALLL 245 (470)
Q Consensus 239 ~l~~~~~ 245 (470)
+++.+..
T Consensus 85 Nl~~~~~ 91 (95)
T d1tjca_ 85 NLKYFEY 91 (95)
T ss_dssp HHHHHHH
T ss_pred HHHHHHH
Confidence 9876643
|
| >d1tjca_ a.118.8.1 (A:) Prolyl 4-hydroxylase alpha-1 subunit, P4HA1 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Prolyl 4-hydroxylase alpha-1 subunit, P4HA1 species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.21 E-value=1.8e-11 Score=84.73 Aligned_cols=89 Identities=15% Similarity=0.102 Sum_probs=63.9
Q ss_pred ChHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCChHHHHHHHHHHHhhhcccccccccchhhhhHHHhcCCHHHHHHHH
Q 012143 199 NCDCIGNLGIAYFQSGDMEQSAKCFQDLILKDQNHPAALINYAALLLCKYGSVLAGAGANTGEGACLDQASAVNVAKECL 278 (470)
Q Consensus 199 ~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~ 278 (470)
+++-++.+|.++++.|++++|+..|++++++.|.+.......+.++. .+|.++.+.|++++|+.+|
T Consensus 4 saddc~~lG~~~~~~g~y~~A~~~~~~Al~~~~~~~~~~~~~~~~l~--------------~Lg~~~~~~g~~~~A~~~y 69 (95)
T d1tjca_ 4 TAEDSFELGKVAYTEADYYHTELWMEQALRQLDEGEISTIDKVSVLD--------------YLSYAVYQQGDLDKALLLT 69 (95)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTTCCCSSCHHHHHH--------------HHHHHHHHTTCHHHHHHHH
T ss_pred cHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHhhhhccCccHHHHHH--------------HHhhHHHhcCChHHHHHHH
Confidence 35678899999999999999999999999987765432222222221 1334444788888888888
Q ss_pred HHHHhcCCCCHHHHHHHHHHHHH
Q 012143 279 LAALKADPKAAHIWANLANAYYL 301 (470)
Q Consensus 279 ~~~~~~~p~~~~~~~~la~~~~~ 301 (470)
+++++++|+++.++.+++.+...
T Consensus 70 ~~aL~l~P~~~~a~~Nl~~~~~~ 92 (95)
T d1tjca_ 70 KKLLELDPEHQRANGNLKYFEYI 92 (95)
T ss_dssp HHHHHHCTTCHHHHHHHHHHHHH
T ss_pred HHHHHhCcCCHHHHHHHHHHHHH
Confidence 88888888888888877665443
|
| >d2hr2a1 a.118.8.8 (A:2-157) Hypothetical protein CT2138 {Chlorobium tepidum [TaxId: 1097]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: CT2138-like domain: Hypothetical protein CT2138 species: Chlorobium tepidum [TaxId: 1097]
Probab=99.19 E-value=3e-11 Score=92.76 Aligned_cols=108 Identities=7% Similarity=-0.020 Sum_probs=82.0
Q ss_pred hHHHHH--HHHHHHHcCChHHHHHHHHHHhhcCCCCh------------HHHHHHHHHHHHcCCHHHHHHHHHHHHhhCC
Q 012143 166 AVVWNT--LGLILLKSGRLQSSISVLSSLLAVDPNNC------------DCIGNLGIAYFQSGDMEQSAKCFQDLILKDQ 231 (470)
Q Consensus 166 ~~~~~~--l~~~~~~~~~~~~A~~~~~~a~~~~~~~~------------~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p 231 (470)
..++.. .|..++..|+|++|+..|++++++.|+.+ .++.++|.+|..+|++++|+..+++++.+.|
T Consensus 7 a~a~~~l~~g~~~~~~g~y~~Ai~~y~~Al~i~~~~~~~~~~~~~~~~a~~~~nlg~~~~~lg~~~~A~~~~~~al~~~~ 86 (156)
T d2hr2a1 7 VGAYLALSDAQRQLVAGEYDEAAANCRRAMEISHTMPPEEAFDHAGFDAFCHAGLAEALAGLRSFDEALHSADKALHYFN 86 (156)
T ss_dssp HHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHTTSCTTSCCCHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhChhhhhhhhcccchhHHHHHHHHHHHHHHcCccchhhHhhhhhhhccc
Confidence 344444 48889999999999999999999877643 5788999999999999999999999998754
Q ss_pred CC----hHHHHHHHHHHHhhhcccccccccchhhhhHHHhcCCHHHHHHHHHHHHhcCCC
Q 012143 232 NH----PAALINYAALLLCKYGSVLAGAGANTGEGACLDQASAVNVAKECLLAALKADPK 287 (470)
Q Consensus 232 ~~----~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~p~ 287 (470)
.. .........++ ..+|.++...|++++|+..|++++++.|.
T Consensus 87 ~~~~~~~~~~~~~~~a~--------------~~~g~~~~~lg~~eeA~~~~~~Al~l~~~ 132 (156)
T d2hr2a1 87 RRGELNQDEGKLWISAV--------------YSRALALDGLGRGAEAMPEFKKVVEMIEE 132 (156)
T ss_dssp HHCCTTSTHHHHHHHHH--------------HHHHHHHHHTTCHHHHHHHHHHHHHHHHH
T ss_pred ccccccccccchhHHHH--------------hhhHHHHHHHHHHHHHHHHHHHHHHhhHH
Confidence 21 11111111122 22456666899999999999999998654
|
| >d1zbpa1 e.61.1.1 (A:2-265) Hypothetical protein VPA1032 {Vibrio parahaemolyticus [TaxId: 670]} | Back information, alignment and structure |
|---|
class: Multi-domain proteins (alpha and beta) fold: ImpE-like superfamily: ImpE-like family: ImpE-like domain: Hypothetical protein VPA1032 species: Vibrio parahaemolyticus [TaxId: 670]
Probab=99.15 E-value=3.9e-11 Score=99.97 Aligned_cols=132 Identities=13% Similarity=0.040 Sum_probs=93.8
Q ss_pred HHHHcCChHHHHHHHHHHhhcCCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCChHHHHHHHHHHHhhhcccccc
Q 012143 175 ILLKSGRLQSSISVLSSLLAVDPNNCDCIGNLGIAYFQSGDMEQSAKCFQDLILKDQNHPAALINYAALLLCKYGSVLAG 254 (470)
Q Consensus 175 ~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~l~~~~~~~~~~~~~~ 254 (470)
-.+..|++++|+..|+++++.+|+++.++..+|.++...|++++|+..|+++++++|++...+..++.++..
T Consensus 5 ~aL~~G~l~eAl~~l~~al~~~P~d~~ar~~La~lL~~~G~~e~A~~~l~~a~~l~P~~~~~~~~l~~ll~a-------- 76 (264)
T d1zbpa1 5 NALSEGQLQQALELLIEAIKASPKDASLRSSFIELLCIDGDFERADEQLMQSIKLFPEYLPGASQLRHLVKA-------- 76 (264)
T ss_dssp HHTTTTCHHHHHHHHHHHHHTCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCGGGHHHHHHHHHHHHH--------
T ss_pred HHHHCCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHh--------
Confidence 345677888888888888888888888888888888888888888888888888888877777777666552
Q ss_pred cccchhhhhHHHhcCCHHHHHHHHHHHH-hcCCCCHHHHHHHHHHHHHcCChhHHHHHHHHHHhcCCCcccHHH
Q 012143 255 AGANTGEGACLDQASAVNVAKECLLAAL-KADPKAAHIWANLANAYYLTGDHRSSGKCLEKAAKLEPNCMSTRY 327 (470)
Q Consensus 255 ~~~~~~~~~~~~~~~~~~~A~~~~~~~~-~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~p~~~~~~~ 327 (470)
.+..+++...+.+.. ...|.....+...+.++...|++++|...+.++.+..|..+..+.
T Consensus 77 -------------~~~~~~a~~~~~~~~~~~~p~~~~~~l~~a~~~~~~gd~~~A~~~~~~a~e~~p~~~~~~~ 137 (264)
T d1zbpa1 77 -------------AQARKDFAQGAATAKVLGENEELTKSLVSFNLSMVSQDYEQVSELALQIEELRQEKGFLAN 137 (264)
T ss_dssp -------------HHHHHHHTTSCCCEECCCSCHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCCCCCEEET
T ss_pred -------------ccccHHHHHHhhhhhcccCchHHHHHHHHHHHHHhCCCHHHHHHHHHHHHhcCCCCCcccc
Confidence 222333322222211 123445566777788888999999999999999998888765443
|
| >d1zbpa1 e.61.1.1 (A:2-265) Hypothetical protein VPA1032 {Vibrio parahaemolyticus [TaxId: 670]} | Back information, alignment and structure |
|---|
class: Multi-domain proteins (alpha and beta) fold: ImpE-like superfamily: ImpE-like family: ImpE-like domain: Hypothetical protein VPA1032 species: Vibrio parahaemolyticus [TaxId: 670]
Probab=99.14 E-value=2.4e-11 Score=101.23 Aligned_cols=131 Identities=11% Similarity=0.077 Sum_probs=107.7
Q ss_pred ccCcccHHHHHHHHHHhhhcCccchHHHHHHHHHHHHcCChHHHHHHHHHHhhcCCCChHHHHHHHHHHHHcCCHHHHHH
Q 012143 142 ELEPEELEEILSKLKESMQSDTRQAVVWNTLGLILLKSGRLQSSISVLSSLLAVDPNNCDCIGNLGIAYFQSGDMEQSAK 221 (470)
Q Consensus 142 ~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~la~~~~~~g~~~~A~~ 221 (470)
.++.|++++|+..++++++.+|+++.++..+|.++...|++++|+..|+++++++|++..++..++.++...+..+++..
T Consensus 6 aL~~G~l~eAl~~l~~al~~~P~d~~ar~~La~lL~~~G~~e~A~~~l~~a~~l~P~~~~~~~~l~~ll~a~~~~~~a~~ 85 (264)
T d1zbpa1 6 ALSEGQLQQALELLIEAIKASPKDASLRSSFIELLCIDGDFERADEQLMQSIKLFPEYLPGASQLRHLVKAAQARKDFAQ 85 (264)
T ss_dssp HTTTTCHHHHHHHHHHHHHTCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCGGGHHHHHHHHHHHHHHHHHHHHTT
T ss_pred HHHCCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHhccccHHHHH
Confidence 57889999999999999999999999999999999999999999999999999999999999999999887777766655
Q ss_pred HHHHHHhh-CCCChHHHHHHHHHHHhhhcccccccccchhhhhHHHhcCCHHHHHHHHHHHHhcCCCCHHHHH
Q 012143 222 CFQDLILK-DQNHPAALINYAALLLCKYGSVLAGAGANTGEGACLDQASAVNVAKECLLAALKADPKAAHIWA 293 (470)
Q Consensus 222 ~~~~~l~~-~p~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~ 293 (470)
.+.+.... .|.....+...+..+. ..|++++|+..+.++.+..|..+..+.
T Consensus 86 ~~~~~~~~~~p~~~~~~l~~a~~~~---------------------~~gd~~~A~~~~~~a~e~~p~~~~~~~ 137 (264)
T d1zbpa1 86 GAATAKVLGENEELTKSLVSFNLSM---------------------VSQDYEQVSELALQIEELRQEKGFLAN 137 (264)
T ss_dssp SCCCEECCCSCHHHHHHHHHHHHHH---------------------HHTCHHHHHHHHHHHHHHCCCCCEEET
T ss_pred HhhhhhcccCchHHHHHHHHHHHHH---------------------hCCCHHHHHHHHHHHHhcCCCCCcccc
Confidence 54443322 3433334444444444 799999999999999999998765543
|
| >d2hr2a1 a.118.8.8 (A:2-157) Hypothetical protein CT2138 {Chlorobium tepidum [TaxId: 1097]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: CT2138-like domain: Hypothetical protein CT2138 species: Chlorobium tepidum [TaxId: 1097]
Probab=99.11 E-value=1.6e-10 Score=88.66 Aligned_cols=108 Identities=13% Similarity=-0.011 Sum_probs=80.0
Q ss_pred HHHHHHHHhCChhHHHHHHHHHHHHHhhhhcccchhhhHHHHHHhhhccccccccCCCccccccCcccHHHHHHHHHHhh
Q 012143 80 LLGLMYQRLGQPLKAVSSYEKAEEILLRCEADIARPELLSLVQIHHAQCLLPESSGDNSLDKELEPEELEEILSKLKESM 159 (470)
Q Consensus 80 ~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~ 159 (470)
..|..++..|+|++|+..|++++++.|+.............+.++.++|.++. ..|++++|+..+++++
T Consensus 14 ~~g~~~~~~g~y~~Ai~~y~~Al~i~~~~~~~~~~~~~~~~a~~~~nlg~~~~-----------~lg~~~~A~~~~~~al 82 (156)
T d2hr2a1 14 SDAQRQLVAGEYDEAAANCRRAMEISHTMPPEEAFDHAGFDAFCHAGLAEALA-----------GLRSFDEALHSADKAL 82 (156)
T ss_dssp HHHHHHHHHTCHHHHHHHHHHHHHHHTTSCTTSCCCHHHHHHHHHHHHHHHHH-----------HTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHHhChhhhhhhhcccchhHHHHHHHHHHHHH-----------HcCccchhhHhhhhhh
Confidence 34888999999999999999999998875443322223333456667777654 5566799999999988
Q ss_pred hcCcc-----------chHHHHHHHHHHHHcCChHHHHHHHHHHhhcCCC
Q 012143 160 QSDTR-----------QAVVWNTLGLILLKSGRLQSSISVLSSLLAVDPN 198 (470)
Q Consensus 160 ~~~p~-----------~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~ 198 (470)
...|. ...+++++|.+|..+|++++|+..|++++++.|+
T Consensus 83 ~~~~~~~~~~~~~~~~~~~a~~~~g~~~~~lg~~eeA~~~~~~Al~l~~~ 132 (156)
T d2hr2a1 83 HYFNRRGELNQDEGKLWISAVYSRALALDGLGRGAEAMPEFKKVVEMIEE 132 (156)
T ss_dssp HHHHHHCCTTSTHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHH
T ss_pred hcccccccccccccchhHHHHhhhHHHHHHHHHHHHHHHHHHHHHHhhHH
Confidence 76543 2336778888888888888888888888887553
|
| >d2ff4a2 a.118.8.3 (A:105-283) Probable regulatory protein EmbR, middle domain {Mycobacterium tuberculosis [TaxId: 1773]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: BTAD-like domain: Probable regulatory protein EmbR, middle domain species: Mycobacterium tuberculosis [TaxId: 1773]
Probab=99.04 E-value=5.5e-10 Score=87.07 Aligned_cols=118 Identities=14% Similarity=0.040 Sum_probs=94.4
Q ss_pred hhHHHHHHHHHHHhCChhHHHHHHHHHHHHHhhhhcccchhhhHHHHHHhhhccccccccCCCccccccCcccHHHHHHH
Q 012143 75 AHAHFLLGLMYQRLGQPLKAVSSYEKAEEILLRCEADIARPELLSLVQIHHAQCLLPESSGDNSLDKELEPEELEEILSK 154 (470)
Q Consensus 75 ~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~ 154 (470)
...+...|......|++++|+..|.+++.+.+.+.. ++. ..+.+ .
T Consensus 11 f~~~~~~g~~~~~~g~~e~A~~~~~~AL~l~rG~~l----~~~--------------------------~~~~w-----~ 55 (179)
T d2ff4a2 11 FVAEKTAGVHAAAAGRFEQASRHLSAALREWRGPVL----DDL--------------------------RDFQF-----V 55 (179)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCCSSTT----GGG--------------------------TTSTT-----H
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHhhCccccc----ccC--------------------------cchHH-----H
Confidence 457888999999999999999999999987543210 000 00111 1
Q ss_pred HHHhhhcCccchHHHHHHHHHHHHcCChHHHHHHHHHHhhcCCCChHHHHHHHHHHHHcCCHHHHHHHHHHHH
Q 012143 155 LKESMQSDTRQAVVWNTLGLILLKSGRLQSSISVLSSLLAVDPNNCDCIGNLGIAYFQSGDMEQSAKCFQDLI 227 (470)
Q Consensus 155 ~~~~~~~~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~l 227 (470)
........+....++..++.++...|++++|+.++++++..+|.+..+|..++.++...|++.+|+..|+++.
T Consensus 56 ~~~r~~l~~~~~~a~~~la~~~~~~g~~~~Al~~~~~al~~~P~~e~~~~~l~~al~~~Gr~~eAl~~y~~~~ 128 (179)
T d2ff4a2 56 EPFATALVEDKVLAHTAKAEAEIACGRASAVIAELEALTFEHPYREPLWTQLITAYYLSDRQSDALGAYRRVK 128 (179)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHTTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHCCCchHHHHHHHHHHHhCCccHHHHHHHHHHHHHhcCHHHHHHHHHHHH
Confidence 1222334456678999999999999999999999999999999999999999999999999999999999984
|
| >d2ff4a2 a.118.8.3 (A:105-283) Probable regulatory protein EmbR, middle domain {Mycobacterium tuberculosis [TaxId: 1773]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: BTAD-like domain: Probable regulatory protein EmbR, middle domain species: Mycobacterium tuberculosis [TaxId: 1773]
Probab=98.95 E-value=2.1e-09 Score=83.65 Aligned_cols=120 Identities=16% Similarity=0.082 Sum_probs=87.8
Q ss_pred chHHHHHHHHHHHHcCChHHHHHHHHHHhhcCCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCChHHHHHHHHHH
Q 012143 165 QAVVWNTLGLILLKSGRLQSSISVLSSLLAVDPNNCDCIGNLGIAYFQSGDMEQSAKCFQDLILKDQNHPAALINYAALL 244 (470)
Q Consensus 165 ~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~l~~~~ 244 (470)
....+...|......|++++|+..|.+++.+.+........ .+.+ .......+.+....++..++.++
T Consensus 10 ~f~~~~~~g~~~~~~g~~e~A~~~~~~AL~l~rG~~l~~~~-------~~~w-----~~~~r~~l~~~~~~a~~~la~~~ 77 (179)
T d2ff4a2 10 RFVAEKTAGVHAAAAGRFEQASRHLSAALREWRGPVLDDLR-------DFQF-----VEPFATALVEDKVLAHTAKAEAE 77 (179)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCCSSTTGGGT-------TSTT-----HHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHCCCHHHHHHHHHHHHhhCcccccccCc-------chHH-----HHHHHHHHHHHHHHHHHHHHHHH
Confidence 35577788888889999999999999998887765322110 0111 11112222333445555555555
Q ss_pred HhhhcccccccccchhhhhHHHhcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCChhHHHHHHHHHHh
Q 012143 245 LCKYGSVLAGAGANTGEGACLDQASAVNVAKECLLAALKADPKAAHIWANLANAYYLTGDHRSSGKCLEKAAK 317 (470)
Q Consensus 245 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~ 317 (470)
. ..|++++|+.++++++..+|.+..+|..++.++...|++.+|+..|+++..
T Consensus 78 ~---------------------~~g~~~~Al~~~~~al~~~P~~e~~~~~l~~al~~~Gr~~eAl~~y~~~~~ 129 (179)
T d2ff4a2 78 I---------------------ACGRASAVIAELEALTFEHPYREPLWTQLITAYYLSDRQSDALGAYRRVKT 129 (179)
T ss_dssp H---------------------HTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHTTTCHHHHHHHHHHHHH
T ss_pred H---------------------HCCCchHHHHHHHHHHHhCCccHHHHHHHHHHHHHhcCHHHHHHHHHHHHH
Confidence 5 799999999999999999999999999999999999999999999999843
|
| >d2pqrb1 a.118.8.1 (B:5-128) Mitochondria fission protein Fis1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Mitochondria fission protein Fis1 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=98.55 E-value=9.1e-07 Score=61.90 Aligned_cols=95 Identities=13% Similarity=0.174 Sum_probs=75.0
Q ss_pred HHHHHHHHHHhhhcCccchHHHHHHHHHHHHcC---ChHHHHHHHHHHhhcCCCCh-HHHHHHHHHHHHcCCHHHHHHHH
Q 012143 148 LEEILSKLKESMQSDTRQAVVWNTLGLILLKSG---RLQSSISVLSSLLAVDPNNC-DCIGNLGIAYFQSGDMEQSAKCF 223 (470)
Q Consensus 148 ~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~~---~~~~A~~~~~~a~~~~~~~~-~~~~~la~~~~~~g~~~~A~~~~ 223 (470)
+..-...+.+-....|. +.+.+..|.++.... +.++|+..++.+++.+|.+. ++++.+|..|.++|+|++|..++
T Consensus 18 l~~~~~q~~~e~~~~~s-~qt~F~YAw~Lv~S~~~~d~~~gI~lLe~~~~~~p~~~rd~lY~Lav~yyklgdy~~A~~~~ 96 (124)
T d2pqrb1 18 LEILRQQVVSEGGPTAT-IQSRFNYAWGLIKSTDVNDERLGVKILTDIYKEAESRRRECLYYLTIGCYKLGEYSMAKRYV 96 (124)
T ss_dssp HHHHHHHHHHTTGGGSC-HHHHHHHHHHHHHSSCHHHHHHHHHHHHHHHHHCGGGHHHHHHHHHHHHHHHTCHHHHHHHH
T ss_pred HHHHHHHHHHHhCCCCC-cchHHHHHHHHHcCCcHHHHHHHHHHHHHHHhcCchhHHHHHHHHHHHHHHHhhHHHHHHHH
Confidence 33334444444333333 678899999998765 45789999999999998764 89999999999999999999999
Q ss_pred HHHHhhCCCChHHHHHHHHH
Q 012143 224 QDLILKDQNHPAALINYAAL 243 (470)
Q Consensus 224 ~~~l~~~p~~~~~~~~l~~~ 243 (470)
+++++++|++..+......+
T Consensus 97 ~~~L~ieP~n~qA~~L~~~I 116 (124)
T d2pqrb1 97 DTLFEHERNNKQVGALKSMV 116 (124)
T ss_dssp HHHHHHCTTCHHHHHHHHHH
T ss_pred HHHHccCCCcHHHHHHHHHH
Confidence 99999999999886554433
|
| >d1klxa_ a.118.18.1 (A:) Cysteine rich protein B (HcpB) {Helicobacter pylori [TaxId: 210]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: HCP-like family: HCP-like domain: Cysteine rich protein B (HcpB) species: Helicobacter pylori [TaxId: 210]
Probab=98.31 E-value=6.5e-06 Score=60.15 Aligned_cols=83 Identities=11% Similarity=0.003 Sum_probs=70.3
Q ss_pred cccHHHHHHHHHHHhcchhhhhHhhHHHHHHH----hccHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHH----cCChHH
Q 012143 382 HHEVAAAFETEENELSKMEECAGAGESAFLDQ----ASAVNVAKECLLAALKADPKAAHIWANLANAYYL----TGDHRS 453 (470)
Q Consensus 382 ~~~~~~A~~~~~~~~~~~~~~~~~~l~~~~~~----~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~----~g~~~~ 453 (470)
..+.++|+..+.++.+...+.+.+.+|.+|.. ..++++|+.+|+++.+. .++.+.+.||.+|.. ..|.++
T Consensus 36 ~~~~~~a~~~~~~aa~~g~~~a~~~Lg~~y~~g~~~~~d~~~A~~~~~~aa~~--g~~~a~~~Lg~~y~~G~gv~~d~~~ 113 (133)
T d1klxa_ 36 QINKQKLFQYLSKACELNSGNGCRFLGDFYENGKYVKKDLRKAAQYYSKACGL--NDQDGCLILGYKQYAGKGVVKNEKQ 113 (133)
T ss_dssp TSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHCSSSCCCHHHHHHHHHHHHHT--TCHHHHHHHHHHHHHTSSSCCCHHH
T ss_pred ccCHHHHHHHHhhhhcccchhhhhhHHHhhhhccccchhhHHHHHHHhhhhcc--CcchHHHHHHHHHHcCCccCCCHHH
Confidence 35677888899888888888889999998875 45789999999999885 578999999999987 568999
Q ss_pred HHHHHHHHHHhhc
Q 012143 454 SGKCLEKVLMVYC 466 (470)
Q Consensus 454 A~~~~~~al~~~~ 466 (470)
|+.+|++|.+.-.
T Consensus 114 A~~~~~~Aa~~G~ 126 (133)
T d1klxa_ 114 AVKTFEKACRLGS 126 (133)
T ss_dssp HHHHHHHHHHTTC
T ss_pred HHHHHHHHHHCCC
Confidence 9999999987653
|
| >d1klxa_ a.118.18.1 (A:) Cysteine rich protein B (HcpB) {Helicobacter pylori [TaxId: 210]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: HCP-like family: HCP-like domain: Cysteine rich protein B (HcpB) species: Helicobacter pylori [TaxId: 210]
Probab=98.31 E-value=1.2e-05 Score=58.71 Aligned_cols=116 Identities=13% Similarity=0.059 Sum_probs=93.9
Q ss_pred ccHHHHHHHHHHhhhcCccchHHHHHHHHHHHHcCChHHHHHHHHHHhhcCCCChHHHHHHHHHHHH----cCCHHHHHH
Q 012143 146 EELEEILSKLKESMQSDTRQAVVWNTLGLILLKSGRLQSSISVLSSLLAVDPNNCDCIGNLGIAYFQ----SGDMEQSAK 221 (470)
Q Consensus 146 ~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~la~~~~~----~g~~~~A~~ 221 (470)
.|+++|+.+|+++.+.. ++.+.+.++. ....++++|+.+|+++.+. .++.+.+.+|.+|.. ..++++|+.
T Consensus 7 kd~~~A~~~~~kaa~~g--~~~a~~~l~~--~~~~~~~~a~~~~~~aa~~--g~~~a~~~Lg~~y~~g~~~~~d~~~A~~ 80 (133)
T d1klxa_ 7 KDLKKAIQYYVKACELN--EMFGCLSLVS--NSQINKQKLFQYLSKACEL--NSGNGCRFLGDFYENGKYVKKDLRKAAQ 80 (133)
T ss_dssp HHHHHHHHHHHHHHHTT--CTTHHHHHHT--CTTSCHHHHHHHHHHHHHT--TCHHHHHHHHHHHHHCSSSCCCHHHHHH
T ss_pred cCHHHHHHHHHHHHHCC--Chhhhhhhcc--ccccCHHHHHHHHhhhhcc--cchhhhhhHHHhhhhccccchhhHHHHH
Confidence 57899999999998764 5667777764 4567899999999999775 678999999999986 568999999
Q ss_pred HHHHHHhhCCCChHHHHHHHHHHHhhhcccccccccchhhhhHHHhcCCHHHHHHHHHHHHhcCC
Q 012143 222 CFQDLILKDQNHPAALINYAALLLCKYGSVLAGAGANTGEGACLDQASAVNVAKECLLAALKADP 286 (470)
Q Consensus 222 ~~~~~l~~~p~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~p 286 (470)
+|+++.+. .++.+.+.+|.++..-.+ -..++.+|+.+|+++.+...
T Consensus 81 ~~~~aa~~--g~~~a~~~Lg~~y~~G~g-----------------v~~d~~~A~~~~~~Aa~~G~ 126 (133)
T d1klxa_ 81 YYSKACGL--NDQDGCLILGYKQYAGKG-----------------VVKNEKQAVKTFEKACRLGS 126 (133)
T ss_dssp HHHHHHHT--TCHHHHHHHHHHHHHTSS-----------------SCCCHHHHHHHHHHHHHTTC
T ss_pred HHhhhhcc--CcchHHHHHHHHHHcCCc-----------------cCCCHHHHHHHHHHHHHCCC
Confidence 99999874 578889999998873111 24689999999999987654
|
| >d2pqrb1 a.118.8.1 (B:5-128) Mitochondria fission protein Fis1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Mitochondria fission protein Fis1 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=98.17 E-value=2.6e-05 Score=54.40 Aligned_cols=66 Identities=11% Similarity=0.021 Sum_probs=56.5
Q ss_pred cccHHHHHHHHHHhhhcCccc-hHHHHHHHHHHHHcCChHHHHHHHHHHhhcCCCChHHHHHHHHHH
Q 012143 145 PEELEEILSKLKESMQSDTRQ-AVVWNTLGLILLKSGRLQSSISVLSSLLAVDPNNCDCIGNLGIAY 210 (470)
Q Consensus 145 ~~~~~~A~~~~~~~~~~~p~~-~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~la~~~ 210 (470)
..+..+++.+++.+++.+|.+ .++++.+|..|.++|+|++|..+++++++++|++..+....-.+.
T Consensus 51 ~~d~~~gI~lLe~~~~~~p~~~rd~lY~Lav~yyklgdy~~A~~~~~~~L~ieP~n~qA~~L~~~Ie 117 (124)
T d2pqrb1 51 VNDERLGVKILTDIYKEAESRRRECLYYLTIGCYKLGEYSMAKRYVDTLFEHERNNKQVGALKSMVE 117 (124)
T ss_dssp HHHHHHHHHHHHHHHHHCGGGHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHhcCchhHHHHHHHHHHHHHHHhhHHHHHHHHHHHHccCCCcHHHHHHHHHHH
Confidence 355688888888888888876 479999999999999999999999999999999998876655443
|
| >d1qsaa1 a.118.5.1 (A:1-450) 70 KDa soluble lytic transglycosylase (SLT70), superhelical domain {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: Bacterial muramidases family: Bacterial muramidases domain: 70 KDa soluble lytic transglycosylase (SLT70), superhelical domain species: Escherichia coli [TaxId: 562]
Probab=97.59 E-value=0.022 Score=50.54 Aligned_cols=352 Identities=11% Similarity=-0.029 Sum_probs=180.8
Q ss_pred HHHHHHHhcCCCCcchhhhcccc--hhhhhcChhhHHHHHHHHHHhCCCChhHHHHHHHHHHHhCChhHHHHHHHHHHHH
Q 012143 27 SKMDSALEFGVDADGDQSGLGTS--SSSREEKVSSLKTGLVHVARKMPKNAHAHFLLGLMYQRLGQPLKAVSSYEKAEEI 104 (470)
Q Consensus 27 ~~~~~~l~~~p~~~~~~~~~~~~--~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~ 104 (470)
..+...|+..|+.+......... .+...+++......+ ...|.+....+..+.+....|+..+|......+...
T Consensus 56 ~~i~~Fl~~~p~~P~~~~lr~~~l~~L~~~~~w~~~~~~~----~~~p~~~~~~c~~~~A~~~~g~~~~a~~~~~~lW~~ 131 (450)
T d1qsaa1 56 VTVTNFVRANPTLPPARTLQSRFVNELARREDWRGLLAFS----PEKPGTTEAQCNYYYAKWNTGQSEEAWQGAKELWLT 131 (450)
T ss_dssp HHHHHHHHHCTTCHHHHHHHHHHHHHHHHTTCHHHHHHHC----CSCCSSHHHHHHHHHHHHHTTCHHHHHHHHHHHHSC
T ss_pred HHHHHHHHHCCCChhHHHHHHHHHHHHHhccCHHHHHHhc----cCCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhc
Confidence 45677888899988764443322 144556665544433 346788888888999999999999998887776643
Q ss_pred HhhhhcccchhhhHHHHHHhhhccccccccCCCccccccCcccHHHHHHHHHHh-------------hhcCcc-------
Q 012143 105 LLRCEADIARPELLSLVQIHHAQCLLPESSGDNSLDKELEPEELEEILSKLKES-------------MQSDTR------- 164 (470)
Q Consensus 105 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~-------------~~~~p~------- 164 (470)
....+..+ ......+...+.+-...-...+...+..|++..|...+..+ +..+|.
T Consensus 132 ~~~~p~~c-----~~l~~~~~~~~~lt~~~~~~R~~~~l~~~~~~~a~~l~~~l~~~~~~~~~a~~~l~~~p~~~~~~~~ 206 (450)
T d1qsaa1 132 GKSQPNAC-----DKLFSVWRASGKQDPLAYLERIRLAMKAGNTGLVTVLAGQMPADYQTIASAIISLANNPNTVLTFAR 206 (450)
T ss_dssp SSCCCTHH-----HHHHHHHHHTTCSCHHHHHHHHHHHHHTTCHHHHHHHHHTCCGGGHHHHHHHHHHHHCGGGHHHHHH
T ss_pred CCCCchHH-----HHHHHHHHhcCCCCHHHHHHHHHHHHHcCChhhHHHHHhhCChhHHHHHHHHHHHHhChHhHHHHHh
Confidence 21111000 00000000000000000000011122333333333333221 001111
Q ss_pred ----chH--HHHHHHHHHHHcCChHHHHHHHHHHhhcCCCChHHHHHHHH----HHHHcCCHHHHHHHHHHHHhhCCCCh
Q 012143 165 ----QAV--VWNTLGLILLKSGRLQSSISVLSSLLAVDPNNCDCIGNLGI----AYFQSGDMEQSAKCFQDLILKDQNHP 234 (470)
Q Consensus 165 ----~~~--~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~la~----~~~~~g~~~~A~~~~~~~l~~~p~~~ 234 (470)
++. .....+..-....+.+.|...+.......+.....+..... .....+..+.+...+........+..
T Consensus 207 ~~~~~~~~~~~~~~~l~rla~~d~~~a~~~l~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~a~~~~~~~~~~~~~~~ 286 (450)
T d1qsaa1 207 TTGATDFTRQMAAVAFASVARQDAENARLMIPSLAQAQQLNEDQIQELRDIVAWRLMGNDVTDEQAKWRDDAIMRSQSTS 286 (450)
T ss_dssp HSCCCHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHTSCSTTCCHHHHHHHHHHHHTCCCHH
T ss_pred cCCCChhhhHHHHHHHHHHhccChhHHHHHHHhhhhcccccHHHHHHHHHHHHHHHHHcCchHHHHHHHHhhcccccchH
Confidence 111 11222333333456666666666655444433332222222 22234455566665555544333322
Q ss_pred HHHHHHHHHHHhhhcccccccccchhhhhHHHhcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCChhHHHHHHHH
Q 012143 235 AALINYAALLLCKYGSVLAGAGANTGEGACLDQASAVNVAKECLLAALKADPKAAHIWANLANAYYLTGDHRSSGKCLEK 314 (470)
Q Consensus 235 ~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~ 314 (470)
.....++.. ...+++..+...+...-......+...+.+|..+...|+.++|...|..
T Consensus 287 ~~~w~~~~a----------------------l~~~~~~~~~~~~~~l~~~~~~~~r~~YW~gRa~~~~G~~~~A~~~~~~ 344 (450)
T d1qsaa1 287 LIERRVRMA----------------------LGTGDRRGLNTWLARLPMEAKEKDEWRYWQADLLLERGREAEAKEILHQ 344 (450)
T ss_dssp HHHHHHHHH----------------------HHHTCHHHHHHHHHHSCTTGGGSHHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred HHHHHHHHH----------------------HHcCChHHHHHHHHhcCcccccHHHHHHHHHHHHHHcCChhhHHHHHHH
Confidence 222222222 2578899988888765443344678889999999999999999999999
Q ss_pred HHhcCCCcccHHHHHHHHHHHHhhhccCchHHhhhhHHHHHHHhhcCCCCCCCcHHHHHHHHHHHhccccHHHHHHHHHH
Q 012143 315 AAKLEPNCMSTRYAVAVSRIKDAERSQEPTEQLSWAGNEMASILREGDPVQIEPPIAWAGFAAVQKTHHEVAAAFETEEN 394 (470)
Q Consensus 315 a~~~~p~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~ 394 (470)
+.. .++ .+-.++...++...... ...........
T Consensus 345 ~a~-~~~---fYG~LAa~~Lg~~~~~~-------------------~~~~~~~~~~~----------------------- 378 (450)
T d1qsaa1 345 LMQ-QRG---FYPMVAAQRIGEEYELK-------------------IDKAPQNVDSA----------------------- 378 (450)
T ss_dssp HHT-SCS---HHHHHHHHHTTCCCCCC-------------------CCCCCSCCCCH-----------------------
T ss_pred Hhc-CCC---hHHHHHHHHcCCCCCCC-------------------cCCCCccHHHh-----------------------
Confidence 875 232 33344444443211000 00000000000
Q ss_pred HhcchhhhhHhhHHHHHHHhccHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHcCChHHHHHHHHHH
Q 012143 395 ELSKMEECAGAGESAFLDQASAVNVAKECLLAALKADPKAAHIWANLANAYYLTGDHRSSGKCLEKV 461 (470)
Q Consensus 395 ~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~a 461 (470)
......+..+..+...|+...|...+..++... ++.-...+|.+....|.++.|+....++
T Consensus 379 ----~~~~~~~~ra~~L~~~g~~~~A~~e~~~l~~~~--~~~~~~~la~lA~~~g~~~~aI~a~~~~ 439 (450)
T d1qsaa1 379 ----LTQGPEMARVRELMYWNLDNTARSEWANLVKSK--SKTEQAQLARYAFNNQWWDLSVQATIAG 439 (450)
T ss_dssp ----HHHSHHHHHHHHHHHTTCHHHHHHHHHHHHTTC--CHHHHHHHHHHHHHTTCHHHHHHHHHHT
T ss_pred ----hhcChHHHHHHHHHHcCCchHHHHHHHHHHhCC--CHHHHHHHHHHHHHCCChhHHHHHHHHH
Confidence 000112233446777888888888888776542 4556677888888889888888776654
|
| >d1b89a_ a.118.1.3 (A:) Clathrin heavy chain proximal leg segment {Cow (Bos taurus) [TaxId: 9913]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: ARM repeat family: Clathrin heavy chain proximal leg segment domain: Clathrin heavy chain proximal leg segment species: Cow (Bos taurus) [TaxId: 9913]
Probab=96.84 E-value=0.1 Score=43.60 Aligned_cols=41 Identities=12% Similarity=0.199 Sum_probs=25.6
Q ss_pred HHHhccHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHcCChHH
Q 012143 411 LDQASAVNVAKECLLAALKADPKAAHIWANLANAYYLTGDHRS 453 (470)
Q Consensus 411 ~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~ 453 (470)
..+.++..-...+++..... ++..+...++.+|...+|++.
T Consensus 258 ~~k~~~l~li~p~Le~v~~~--n~~~vn~al~~lyie~~d~~~ 298 (336)
T d1b89a_ 258 FSKVKQLPLVKPYLRSVQNH--NNKSVNESLNNLFITEEDYQA 298 (336)
T ss_dssp HHHTTCTTTTHHHHHHHHTT--CCHHHHHHHHHHHHHTTCHHH
T ss_pred HHhcCCcHHHHHHHHHHHHc--ChHHHHHHHHHHHhCcchhHH
Confidence 34455555666666665443 345677778888888887543
|
| >d1b89a_ a.118.1.3 (A:) Clathrin heavy chain proximal leg segment {Cow (Bos taurus) [TaxId: 9913]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: ARM repeat family: Clathrin heavy chain proximal leg segment domain: Clathrin heavy chain proximal leg segment species: Cow (Bos taurus) [TaxId: 9913]
Probab=96.78 E-value=0.081 Score=44.19 Aligned_cols=39 Identities=18% Similarity=0.100 Sum_probs=27.3
Q ss_pred HHHhcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHc
Q 012143 264 CLDQASAVNVAKECLLAALKADPKAAHIWANLANAYYLT 302 (470)
Q Consensus 264 ~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~la~~~~~~ 302 (470)
.+...|.+++.+.+++.++...+.+...+..++.+|.+.
T Consensus 108 ~ye~~~~~e~Li~~Le~~~~~~~~~~~~~~~L~~lyak~ 146 (336)
T d1b89a_ 108 YYQDRGYFEELITMLEAALGLERAHMGMFTELAILYSKF 146 (336)
T ss_dssp HHHHTTCHHHHHHHHHHHTTSTTCCHHHHHHHHHHHHTT
T ss_pred HHHHcCChHHHHHHHHHHHcCCccchHHHHHHHHHHHHh
Confidence 344677777777777777777677777777777766553
|
| >d1qsaa1 a.118.5.1 (A:1-450) 70 KDa soluble lytic transglycosylase (SLT70), superhelical domain {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: Bacterial muramidases family: Bacterial muramidases domain: 70 KDa soluble lytic transglycosylase (SLT70), superhelical domain species: Escherichia coli [TaxId: 562]
Probab=96.67 E-value=0.18 Score=44.26 Aligned_cols=178 Identities=7% Similarity=-0.106 Sum_probs=82.9
Q ss_pred cCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHH----HHcCChhHHHHHHHHHHhcCCCcccHHHHHHHHHHHHhhhccCc
Q 012143 268 ASAVNVAKECLLAALKADPKAAHIWANLANAY----YLTGDHRSSGKCLEKAAKLEPNCMSTRYAVAVSRIKDAERSQEP 343 (470)
Q Consensus 268 ~~~~~~A~~~~~~~~~~~p~~~~~~~~la~~~----~~~g~~~~A~~~~~~a~~~~p~~~~~~~~l~~~~~~~~~~~~~~ 343 (470)
..+.+.|...+.......+.....+....... ...+..+.|...+........+.......++.. +. . ..
T Consensus 227 ~~d~~~a~~~l~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~w~~~~a-l~----~-~~ 300 (450)
T d1qsaa1 227 RQDAENARLMIPSLAQAQQLNEDQIQELRDIVAWRLMGNDVTDEQAKWRDDAIMRSQSTSLIERRVRMA-LG----T-GD 300 (450)
T ss_dssp HHCHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHTSCSTTCCHHHHHHHHHHHHTCCCHHHHHHHHHHH-HH----H-TC
T ss_pred ccChhHHHHHHHhhhhcccccHHHHHHHHHHHHHHHHHcCchHHHHHHHHhhcccccchHHHHHHHHHH-HH----c-CC
Confidence 45667777777766655544444333333222 234555666666666555443332222211111 10 0 00
Q ss_pred hHHhhhhHHHHHHHhhcCCCCCCCcHHHHHHHHHHHhccccHHHHHHHHHHHhcchhhhhHhhHHHHHHHhccHHHHHHH
Q 012143 344 TEQLSWAGNEMASILREGDPVQIEPPIAWAGFAAVQKTHHEVAAAFETEENELSKMEECAGAGESAFLDQASAVNVAKEC 423 (470)
Q Consensus 344 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~ 423 (470)
.. .+...+..........+...+-+|..+...|+.+.|...|....... ..|-.+ +..++|..- ..
T Consensus 301 ~~-------~~~~~~~~l~~~~~~~~r~~YW~gRa~~~~G~~~~A~~~~~~~a~~~--~fYG~L--Aa~~Lg~~~---~~ 366 (450)
T d1qsaa1 301 RR-------GLNTWLARLPMEAKEKDEWRYWQADLLLERGREAEAKEILHQLMQQR--GFYPMV--AAQRIGEEY---EL 366 (450)
T ss_dssp HH-------HHHHHHHHSCTTGGGSHHHHHHHHHHHHHTTCHHHHHHHHHHHHTSC--SHHHHH--HHHHTTCCC---CC
T ss_pred hH-------HHHHHHHhcCcccccHHHHHHHHHHHHHHcCChhhHHHHHHHHhcCC--ChHHHH--HHHHcCCCC---CC
Confidence 11 11112222222223345566777777778888877777777755432 222222 111222100 00
Q ss_pred HHHHHhcCCCc---HHHHHHHHHHHHHcCChHHHHHHHHHHHHhh
Q 012143 424 LLAALKADPKA---AHIWANLANAYYLTGDHRSSGKCLEKVLMVY 465 (470)
Q Consensus 424 ~~~al~~~p~~---~~~~~~la~~~~~~g~~~~A~~~~~~al~~~ 465 (470)
-...+...+.. ...-...+..+...|+...|...+..++.-.
T Consensus 367 ~~~~~~~~~~~~~~~~~~~~ra~~L~~~g~~~~A~~e~~~l~~~~ 411 (450)
T d1qsaa1 367 KIDKAPQNVDSALTQGPEMARVRELMYWNLDNTARSEWANLVKSK 411 (450)
T ss_dssp CCCCCCSCCCCHHHHSHHHHHHHHHHHTTCHHHHHHHHHHHHTTC
T ss_pred CcCCCCccHHHhhhcChHHHHHHHHHHcCCchHHHHHHHHHHhCC
Confidence 00000000011 1122456777889999999999888776543
|
| >d2crba1 a.7.16.1 (A:8-90) Nuclear receptor binding factor 2, NRBF2, N-terminal domain {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: Spectrin repeat-like superfamily: MIT domain-like family: MIT domain domain: Nuclear receptor binding factor 2, NRBF2, N-terminal domain species: Mouse (Mus musculus) [TaxId: 10090]
Probab=81.42 E-value=4 Score=24.84 Aligned_cols=45 Identities=16% Similarity=0.059 Sum_probs=26.1
Q ss_pred HHHHHHHHHhccccHHHHHHHHHHHhcchhhhhHhhHHHHHHHhccHHHHHHHHHHHHhcCCCcHHHHHHH
Q 012143 371 AWAGFAAVQKTHHEVAAAFETEENELSKMEECAGAGESAFLDQASAVNVAKECLLAALKADPKAAHIWANL 441 (470)
Q Consensus 371 ~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l 441 (470)
.+...+.-+...|.|++||+.. .+|..++..|+++ +.+..+...|
T Consensus 10 ~~~RrAer~l~~~rydeAIech-------------------------~kA~~yl~eA~kl-t~s~~~l~SL 54 (83)
T d2crba1 10 QQSRRADRLLAAGKYEEAISCH-------------------------RKATTYLSEAMKL-TESEQAHLSL 54 (83)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHH-------------------------HHHHHHHHHHHTT-CCCHHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHH-------------------------HHHHHHHHHHHhC-CCcHHHHHHH
Confidence 3445555666666666666663 3455566666666 5555555433
|