Citrus Sinensis ID: 012165

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350-------360-------370-------380-------390-------400-------410-------420-------430-------440-------450-------460-------47
Protein Sequence
MASVSNSLSFKHGLSLWCPQSPSLHRIRHSSAKNFQRRGFVVAYSSFANENREFVIVGGGNAAGYAARTFVEHGMADGRLCIVSKEAYAPYERPALTKGYLFPLDKKPARLPGFHTCVGSGGERQTPEWYKEKGIEMIYQDPVTSIDIEKQTLITNSGKLLKYGSLIVATGCTASRFPEKIGGYLPGVHYIRDVADADALISSLEKAKKVVVVGGGYIGMEVAAAAVGWKLDTTRYEQLYQQNGVKFVKGASIKNLEAGSDGRVAAVKLEDGSTIDADTIVIGIGAKPTVSPFERVGLNSSVGGIQVDGQFRTRMPGIFAIGDVAAFPLKMYDRTARVEHVDHARQSAQHCIKALLSAQTHTYDYLPYFYSRVFEYEGSPRKVWWQFFGDNVGETIEIGNFDPKIATFWIDSGKLKGVLVESGSPEEFQLLPTLARSQPFVDKAKLQQASSVEEALEIARAALPVEAAV
Secondary Structure (PSIPRED)
cccccccccccccccccccccccccEEEEccccccccccccccccccccccccEEEEcccHHHHHHHHHHHHcccccccEEEEcccccccccccccccccccccccccccccccccccccccccccHHHHHHcccEEEccccEEEEEccccEEEcccccEEccccEEEcccccccccccccccccccEEEEccHHHHHHHHHHHHccccEEEEcccHHHHHHHHHHHHccccEEEEHHHHHHcccEEEcccEEEEEEEcccccEEEEEcccccEEEccEEEEccccccccHHHHHcccccccccEEEccccccccccEEEcccccccccccccccEEEccHHHHHHHHHHHHHHHccccccccccccEEEccccccccccccEEEEEEEcccccEEEEccccccEEEEEEEccEEEEEEEEcccHHHHHHHHHHHHccccccHHHHccccccHHHHHHHHHcccccccc
Secondary Structure Prediction (SSPRO)
ccccccccccccccEEEccccccccccccccHHHHHHccHHHHHHHHHcccccEEEEcccHHHHHHHHHHHHccccccEEEEEccccccccccccccHHHHcccccccccccccccccccccccccHHHHHHcccEEEEccEEEEEcccccEEEEccccEEEccEEEEEccccccccccccccccccEEEEEcHHHHHHHHHHHcccccEEEEcccHHHHHHHHHHHHccccEEEEHHHHHHcccEEEEcEEEEEEEEccccEEEEEEEccccEEEccEEEEEEcccccHHHHHHcccEEccccEEEccccccccccEEEEccccccccHHcccEEEEEccHHHHHHHHHHHHHHHcccccccccccEEEcccEEEEEEEEEEEEEcccccccEEEEEccccccEEEEEEEccEEEEEEEccccHHHHHHHHHHHHccccccHHHHccccccHHHHHHHHHcccccccc
Coil and Loop (DISEMBL)
masvsnslsfkhglslwcpqspslhrirhsSAKNFQRRGFVVAYSSFANENREFVIVGGGNAAGYAARTFVehgmadgrlcivskeayapyerpaltkgylfpldkkparlpgfhtcvgsggerqtpewykekgiemiyqdpvtsidiEKQTLITNSGKLLKYGSLIvatgctasrfpekiggylpgvhyirdVADADALISSLEKAKKVVVVGGGYIGMEVAAAAVGWKLDTTRYEQLYQQNGVKFVKGASiknleagsdgrVAAVkledgstidadtivigigakptvspfervglnssvggiqvdgqfrtrmpgifaigdvaafplkmydrtarveHVDHARQSAQHCIKALLSAQthtydylpyFYSRVFEYEGSPRKVWWQFFgdnvgetieignfdpkiatFWIDSGKLKGVlvesgspeefqllptlarsqpfvdkakLQQASSVEEALEIARAALPVEAAV
Flexible Loop (DISEMBL)
masvsnslsfkhglsLWCPQSPSLHRIRHSSAKNFQRRGFVVAYSSFANENREFVIVGGGNAAGYAARTFVEHGMADGRLCIVSKEAYAPYERPALTKGYLFPLDKKPARLPGFHtcvgsggerqtpeWYKEKGIEMIYQDPVTSIDIEKQTLITNSGKLLKYGSLIVATGCTASRFPEKIGGYLPGVHYIRDVADADALISSLEKAKKVVVVGGGYIGMEVAAAAVGWKLDTTRYEQLYQQNGVKFVKGASIknleagsdGRVAAVKledgstidaDTIVIGIGAKPTVSPFERVGLNSSVGGIQVDGQFRTRMPGIFAIGDVAAFPLKMYDRTARVEHVDHARQSAQHCIKALLSAQTHTYDYLPYFYSRVFEYEGSPRKVWWQFFGDNVGETIEIGNFDPKIATFWIDSGKLKGVLVESGSPEEFQLLPTLARSQPFVDKAKLQQASSVEEALEIARAALPVEAAV
Low Complexity Region (SEG)
MASVSNSLSFKHGLSLWCPQSPSLHRIRHSSAKNFQRRGFVVAYSSFANENREFVIVGGGNAAGYAARTFVEHGMADGRLCIVSKEAYAPYERPALTKGYLFPLDKKPARLPGFHTCVGSGGERQTPEWYKEKGIEMIYQDPVTSIDIEKQTLITNSGKLLKYGSLIVATGCTASRFPEKIGGYLPGVHYIRDVADADALISSLEKAKKvvvvgggYIGMEVAAAAVGWKLDTTRYEQLYQQNGVKFVKGASIKNLEAGSDGRVAAVKLEDGSTIDADTIVIGIGAKPTVSPFERVGLNSSVGGIQVDGQFRTRMPGIFAIGDVAAFPLKMYDRTARVEHVDHARQSAQHCIKALLSAQTHTYDYLPYFYSRVFEYEGSPRKVWWQFFGDNVGETIEIGNFDPKIATFWIDSGKLKGVLVESGSPEEFQLLPTLARSQPFVDKAKLQQASSVEEALEIARAALPVEAAV
Disordered region (IsUnstruct)
***********HGLSLWCPQ****HRI****AKNFQRRGFVVAYSSFANENREFVIVGGGNAAGYAARTFVEHGMADGRLCIVSKEAYAPYERPALTKGYLFPLDKKPARLPGFHTCVGSGGERQTPEWYKEKGIEMIYQDPVTSIDIEKQTLITNSGKLLKYGSLIVATGCTASRFPEKIGGYLPGVHYIRDVADADALISSLEKAKKVVVVGGGYIGMEVAAAAVGWKLDTTRYEQLYQQNGVKFVKGASIKNLEAGSDGRVAAVKLEDGSTIDADTIVIGIGAKPTVSPFERVGLNSSVGGIQVDGQFRTRMPGIFAIGDVAAFPLKMYDRTARVEHVDHARQSAQHCIKALLSAQTHTYDYLPYFYSRVFEYEGSPRKVWWQFFGDNVGETIEIGNFDPKIATFWIDSGKLKGVLVE************************************************
Disordered Region (DISOPRED)
******S***KHGLSLWCPQSPSLHRIRH************************FVIVGGGNAAGYAARTFVEHGMADGRLCIVSKEAYAPYERPALTKGYLFPLDKKPARLPGFHTCVGSGGERQTPEWYKEKGIEMIYQDPVTSIDIEKQTLITNSGKLLKYGSLIVATGCTASRFPEKIGGYLPGVHYIRDVADADALISSLEKAKKVVVVGGGYIGMEVAAAAVGWKLDTTRYEQLYQQNGVKFVKGASIKNLEAGSDGRVAAVKLEDGSTIDADTIVIGIGAKPTVSPFERVGLNSSVGGIQVDGQFRTRMPGIFAIGDVAAFPLKMYDRTARVEHVDHARQSAQHCIKALLSAQTHTYDYLPYFYSRVFEYEGSPRKVWWQFFGDNVGETIEIGNFDPKIATFWIDSGKLKGVLVESGSPEEFQLLPTLARSQPFVDKAKLQQASSVEEALE*****L******
Disordered Region (DISEMBL)
***********HGLSLWCPQSPSLHRIRHSSAKNFQRRGFVVAYSSFANENREFVIVGGGNAAGYAARTFVEHGMADGRLCIVSKEAYAPYERPALTKGYLFPLDKKPARLPGFHTCVGSGGERQTPEWYKEKGIEMIYQDPVTSIDIEKQTLITNSGKLLKYGSLIVATGCTASRFPEKIGGYLPGVHYIRDVADADALISSLEKAKKVVVVGGGYIGMEVAAAAVGWKLDTTRYEQLYQQNGVKFVKGASIKNLEAGSDGRVAAVKLEDGSTIDADTIVIGIGAKPTVSPFERVGLNSSVGGIQVDGQFRTRMPGIFAIGDVAAFPLKMYDRTARVEH********QHCIKALLSAQTHTYDYLPYFYSRVFEYEGSPRKVWWQFFGDNVGETIEIGNFDPKIATFWIDSGKLKGVLVESGSPEEFQLLPTLARSQPFVDKAKLQQASSVEEALEIARAALPVEAAV
Disordered Region (DISPRO)
*****NSLSFKHGLSLWCPQSPSLHRIRHSSAKNFQRRGFVVAYSSFANENREFVIVGGGNAAGYAARTFVEHGMADGRLCIVSKEAYAPYERPALTKGYLFPLDKKPARLPGFHTCVGSGGERQTPEWYKEKGIEMIYQDPVTSIDIEKQTLITNSGKLLKYGSLIVATGCTASRFPEKIGGYLPGVHYIRDVADADALISSLEKAKKVVVVGGGYIGMEVAAAAVGWKLDTTRYEQLYQQNGVKFVKGASIKNLEAGSDGRVAAVKLEDGSTIDADTIVIGIGAKPTVSPFERVGLNSSVGGIQVDGQFRTRMPGIFAIGDVAAFPLKMYDRTARVEHVDHARQSAQHCIKALLSAQTHTYDYLPYFYSRVFEYEGSPRKVWWQFFGDNVGETIEIGNFDPKIATFWIDSGKLKGVLVESGSPEEFQLLPTLARSQPFVDKAKLQQASSVEEALEIARAA*******
Transmembrane Helix (TMHMM)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (MEMSAT)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooohhhhhhhhhhhhhhhhhhhhiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
TM Helix, Signal Peptide (MEMSAT_SVM)
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (Phobius)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
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Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
MASVSNSLSFKHGLSLWCPQSPSLHRIRHSSAKNFQRRGFVVAYSSFANENREFVIVGGGNAAGYAARTFVEHGMADGRLCIVSKEAYAPYERPALTKGYLFPLDKKPARLPGFHTCVGSGGERQTPEWYKEKGIEMIYQDPVTSIDIEKQTLITNSGKLLKYGSLIVATGCTASRFPEKIGGYLPGVHYIRDVADADALISSLEKAKKVVVVGGGYIGMEVAAAAVGWKLDTTRYEQLYQQNGVKFVKGASIKNLEAGSDGRVAAVKLEDGSTIDADTIVIGIGAKPTVSPFERVGLNSSVGGIQVDGQFRTRMPGIFAIGDVAAFPLKMYDRTARVEHVDHARQSAQHCIKALLSAQTHTYDYLPYFYSRVFEYEGSPRKVWWQFFGDNVGETIEIGNFDPKIATFWIDSGKLKGVLVESGSPEEFQLLPTLARSQPFVDKAKLQQASSVEEALEIARAALPVEAAV
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	469	2.2.26 [Sep-21-2011]
P92947	493	Monodehydroascorbate redu	yes	no	0.982	0.935	0.769	0.0
Q40977	433	Monodehydroascorbate redu	N/A	no	0.810	0.877	0.440	9e-97
Q43497	433	Monodehydroascorbate redu	N/A	no	0.835	0.905	0.430	1e-96
Q9LFA3	434	Probable monodehydroascor	no	no	0.816	0.882	0.418	3e-86
Q42711	434	Monodehydroascorbate redu	N/A	no	0.829	0.896	0.438	1e-85
Q93WJ8	435	Probable monodehydroascor	no	no	0.778	0.839	0.412	2e-85
Q9LK94	488	Probable monodehydroascor	no	no	0.771	0.741	0.402	2e-82
Q9SR59	441	Probable monodehydroascor	no	no	0.776	0.825	0.388	1e-78
P43494	427	Rhodocoxin reductase OS=R	yes	no	0.646	0.709	0.323	6e-36
P16640	422	Putidaredoxin reductase O	yes	no	0.665	0.739	0.297	2e-31

>sp|P92947|MDARP_ARATH Monodehydroascorbate reductase, chloroplastic OS=Arabidopsis thaliana GN=At1g63940 PE=2 SV=3

 Score =  743 bits (1919), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 374/486 (76%), Positives = 411/486 (84%), Gaps = 25/486 (5%)

Query: 1   MASVSNSLSFKHGLSLWCPQSPSLHR---IRHSS-AKNFQRRGFVVAYSSFANENREFVI 56
           MA  S +L  K GLSLWCP SPSL R    R S        R  V A  SFANENREFVI
Sbjct: 8   MALASTTLPTKSGLSLWCPSSPSLARRFPARFSPIGSRIASRSLVTA--SFANENREFVI 65

Query: 57  VGGGNAAGYAARTFVEHGMADGRLCIVSKEAYAPYERPALTKGYLFPLDKKPARLPGFHT 116
           VGGGNAAGYAARTFVE+GMADGRLCIV+KEAYAPYERPALTK YLFP +KKPARLPGFHT
Sbjct: 66  VGGGNAAGYAARTFVENGMADGRLCIVTKEAYAPYERPALTKAYLFPPEKKPARLPGFHT 125

Query: 117 CVGSGGERQTPEWYKEKGIEMIYQDPVTSIDIEKQTLITNSGKLLKYGSLIVATGCTASR 176
           CVG GGERQTP+WYKEKGIE+IY+DPV   D EKQTL T++GK LKYGSLI+ATGCTASR
Sbjct: 126 CVGGGGERQTPDWYKEKGIEVIYEDPVAGADFEKQTLTTDAGKQLKYGSLIIATGCTASR 185

Query: 177 FPEKIGGYLPGVHYIRDVADADALISSLEKAKKVVVVGGGYIGMEVAAAAVGWKLDTT-- 234
           FP+KIGG+LPGVHYIR+VADAD+LI+SL KAKK+V+VGGGYIGMEVAAAAV W LDTT  
Sbjct: 186 FPDKIGGHLPGVHYIREVADADSLIASLGKAKKIVIVGGGYIGMEVAAAAVAWNLDTTIV 245

Query: 235 -----------------RYEQLYQQNGVKFVKGASIKNLEAGSDGRVAAVKLEDGSTIDA 277
                            +YE+LY+QNGVKFVKGASI NLEAGSDGRV+AVKL DGSTI+A
Sbjct: 246 FPEDQLLQRLFTPSLAQKYEELYRQNGVKFVKGASINNLEAGSDGRVSAVKLADGSTIEA 305

Query: 278 DTIVIGIGAKPTVSPFERVGLNSSVGGIQVDGQFRTRMPGIFAIGDVAAFPLKMYDRTAR 337
           DT+VIGIGAKP + PFE + +N S+GGIQVDG FRT  PGIFAIGDVAAFPLK+YDR  R
Sbjct: 306 DTVVIGIGAKPAIGPFETLAMNKSIGGIQVDGLFRTSTPGIFAIGDVAAFPLKIYDRMTR 365

Query: 338 VEHVDHARQSAQHCIKALLSAQTHTYDYLPYFYSRVFEYEGSPRKVWWQFFGDNVGETIE 397
           VEHVDHAR+SAQHC+K+LL+A T TYDYLPYFYSRVFEYEGSPRKVWWQFFGDNVGET+E
Sbjct: 366 VEHVDHARRSAQHCVKSLLTAHTDTYDYLPYFYSRVFEYEGSPRKVWWQFFGDNVGETVE 425

Query: 398 IGNFDPKIATFWIDSGKLKGVLVESGSPEEFQLLPTLARSQPFVDKAKLQQASSVEEALE 457
           +GNFDPKIATFWI+SG+LKGVLVESGSPEEFQLLP LARSQP VDKAKL  ASSVEEALE
Sbjct: 426 VGNFDPKIATFWIESGRLKGVLVESGSPEEFQLLPKLARSQPLVDKAKLASASSVEEALE 485

Query: 458 IARAAL 463
           IA+AAL
Sbjct: 486 IAQAAL 491

Catalyzes the conversion of monodehydroascorbate to ascorbate, oxidizing NADH in the process.
Arabidopsis thaliana (taxid: 3702)
EC: 1EC: .EC: 6EC: .EC: 5EC: .EC: 4

>sp|Q40977|MDAR_PEA Monodehydroascorbate reductase OS=Pisum sativum PE=1 SV=1

 Score =  354 bits (908), Expect = 9e-97,   Method: Compositional matrix adjust.
 Identities = 186/422 (44%), Positives = 259/422 (61%), Gaps = 42/422 (9%)

Query: 53  EFVIVGGGNAAGYAARTFVEHGMADGRLCIVSKEAYAPYERPALTKGYLFPLDKKPARLP 112
           +++I+GGG +AGYAAR FV+ G+  G L I+SKEA APYERPAL+K YLFP  + PARLP
Sbjct: 6   KYIIIGGGVSAGYAAREFVKQGVHPGELAIISKEAVAPYERPALSKAYLFP--ESPARLP 63

Query: 113 GFHTCVGSGGERQTPEWYKEKGIEMIYQDPVTSIDIEKQTLITNSGKLLKYGSLIVATGC 172
           GFHTCVGSGGER  PEWY EKGI++     + S D+  + L + +G+   Y +L++ATG 
Sbjct: 64  GFHTCVGSGGERLLPEWYSEKGIQLYLSTEIVSADLAAKFLKSANGEHFDYQTLVIATGS 123

Query: 173 TASRFPE--KIGGYLPGVHYIRDVADADALISSLEKAK--KVVVVGGGYIGMEVAAAAVG 228
              R  +   IG     + Y+R+V DAD L  ++++ K  K VVVGGGYIG+E++A    
Sbjct: 124 AVIRLTDFGVIGANAKNIFYLREVDDADKLYEAIKRKKNAKRVVVGGGYIGLELSAVLKL 183

Query: 229 WKLDTTR-------------------YEQLYQQNGVKFVKGASIKNLEAGSDGRVAAVKL 269
             LD T                    YE  Y   G+  +KG       A SDG V  VKL
Sbjct: 184 NDLDVTMVYPEPWCMPRLFTSEIAAFYEGYYANKGINIIKGTVAVGFTANSDGEVKEVKL 243

Query: 270 EDGSTIDADTIVIGIGAKPTVSPFERVGLNSSVGGIQVDGQFRTRMPGIFAIGDVAAFPL 329
           +DG  ++AD +++G+G +P +S F +  +    GGI+ D  F+T +P ++A+GDVA FPL
Sbjct: 244 KDGRVLEADIVIVGVGGRPQISLF-KGQVEEQHGGIKTDSFFKTSVPDVYAVGDVATFPL 302

Query: 330 KMYDRTARVEHVDHARQSAQHCIKALLSAQ----THTYDYLPYFYSRVFEYEGSPRKVWW 385
           K+Y+   RVEHVDHAR+SA+   KA+ +A        YDYLPYFYSR F+       + W
Sbjct: 303 KLYNDVRRVEHVDHARKSAEQAAKAIFAADVGKSVEEYDYLPYFYSRSFD-------LSW 355

Query: 386 QFFGDNVGETIEIGNFD-----PKIATFWIDSGKLKGVLVESGSPEEFQLLPTLARSQPF 440
           QF+GDNVGET+  G+ D     PK  T+WI  GK+ G  +E G+P+E + +  +AR++P 
Sbjct: 356 QFYGDNVGETVLFGDNDPASSKPKFGTYWIKEGKVVGAFLEGGTPDENKAIAKVARAKPA 415

Query: 441 VD 442
           V+
Sbjct: 416 VE 417

Catalyzes the conversion of monodehydroascorbate to ascorbate, oxidizing NADH in the process.

Pisum sativum (taxid: 3888)

EC: 1

EC: .

EC: 6

EC: .

EC: 5

EC: .

EC: 4

>sp|Q43497|MDAR_SOLLC Monodehydroascorbate reductase OS=Solanum lycopersicum GN=AFRR PE=1 SV=1

 Score =  353 bits (907), Expect = 1e-96,   Method: Compositional matrix adjust.
 Identities = 187/434 (43%), Positives = 264/434 (60%), Gaps = 42/434 (9%)

Query: 47  FANENREFVIVGGGNAAGYAARTFVEHGMADGRLCIVSKEAYAPYERPALTKGYLFPLDK 106
            A ++ ++VIVGGG +AGYAAR F + G+  G L I+SKEA APYERPAL+K YLFP  +
Sbjct: 1   MAEKSFKYVIVGGGVSAGYAAREFAKQGVKPGELAIISKEAVAPYERPALSKAYLFP--E 58

Query: 107 KPARLPGFHTCVGSGGERQTPEWYKEKGIEMIYQDPVTSIDIEKQTLITNSGKLLKYGSL 166
             ARLPGFH CVGSGGERQ PEWY EKGI +I    +   D+  +TL++ +G+  KY +L
Sbjct: 59  GAARLPGFHVCVGSGGERQLPEWYAEKGISLILSTEIVKADLASKTLVSAAGESFKYQTL 118

Query: 167 IVATGCTASRFPE--KIGGYLPGVHYIRDVADADALISSLEKAK--KVVVVGGGYIGMEV 222
           ++ATG T  +  +    G     + Y+R++ DAD L+ +L+  K  K VVVGGGYIG+E+
Sbjct: 119 VIATGTTVLKLSDFGVQGADSKNIFYLREIDDADQLVEALKAKKNGKAVVVGGGYIGLEL 178

Query: 223 AAAAVGWKLDTTR-------------------YEQLYQQNGVKFVKGASIKNLEAGSDGR 263
           +A      ++                      YE  Y+  GV  +KG      +   +G 
Sbjct: 179 SAVLRLNNIEVNMVYPEPWCMPRLFTEGIAAFYEGYYKNKGVNIIKGTVAVGFDTHPNGE 238

Query: 264 VAAVKLEDGSTIDADTIVIGIGAKPTVSPFERVGLNSSVGGIQVDGQFRTRMPGIFAIGD 323
           V  VKL+DG  ++AD +V+G+GA+P  + F +  +    GGI+ D  F+T +P ++A+GD
Sbjct: 239 VKEVKLKDGRVLEADIVVVGVGARPLTTLF-KGQVEEEKGGIKTDAFFKTSVPDVYAVGD 297

Query: 324 VAAFPLKMYDRTARVEHVDHARQSAQHCIKALLSAQ----THTYDYLPYFYSRVFEYEGS 379
           VA FPLKMY+   RVEHVDH+R+SA+  +KA+ +++       YDYLPYFYSR F+    
Sbjct: 298 VATFPLKMYNEIRRVEHVDHSRKSAEQAVKAIFASEQGKSVDEYDYLPYFYSRAFD---- 353

Query: 380 PRKVWWQFFGDNVGETIEIGNFDPKIAT-----FWIDSGKLKGVLVESGSPEEFQLLPTL 434
              + WQF+GDNVGET+  G+ DP  AT     +WI  GK+ G  +ESGSPEE + +  +
Sbjct: 354 ---LSWQFYGDNVGETVLFGDADPNSATHKFGQYWIKDGKIVGAFLESGSPEENKAIAKV 410

Query: 435 ARSQPFVDKAKLQQ 448
           A+ QP     +L Q
Sbjct: 411 AKVQPPATLDQLAQ 424

Catalyzes the conversion of monodehydroascorbate to ascorbate, oxidizing NADH in the process.

Solanum lycopersicum (taxid: 4081)

EC: 1

EC: .

EC: 6

EC: .

EC: 5

EC: .

EC: 4

>sp|Q9LFA3|MDAR3_ARATH Probable monodehydroascorbate reductase, cytoplasmic isoform 3 OS=Arabidopsis thaliana GN=At3g52880 PE=1 SV=1

 Score =  319 bits (817), Expect = 3e-86,   Method: Compositional matrix adjust.
 Identities = 178/425 (41%), Positives = 259/425 (60%), Gaps = 42/425 (9%)

Query: 47  FANENREFVIVGGGNAAGYAARTFVEHGMADGRLCIVSKEAYAPYERPALTKGYLFPLDK 106
            A ++ +++I+GGG +AGYAA+ F   G+  G L ++SKEA APYERPAL+KGYLFP  +
Sbjct: 1   MAEKSFKYIILGGGVSAGYAAKEFANQGVQPGELAVISKEAVAPYERPALSKGYLFP--E 58

Query: 107 KPARLPGFHTCVGSGGERQTPEWYKEKGIEMIYQDPVTSIDIEKQTLITNSGKLLKYGSL 166
             ARLPGFH CVGSGGE+  PE YK+KGIE+I    +   D+  ++L++ +G + KY +L
Sbjct: 59  GAARLPGFHCCVGSGGEKLLPESYKQKGIELILSTEIVKADLSAKSLVSATGDVFKYQTL 118

Query: 167 IVATGCTASRFPE--KIGGYLPGVHYIRDVADADALISSL--EKAKKVVVVGGGYIGMEV 222
           I+ATG T  R  +    G     + Y+R++ DAD L+ ++  +K  K VVVGGGYIG+E+
Sbjct: 119 IIATGSTVLRLTDFGVKGADSKNILYLREIDDADKLVEAIKAKKGGKAVVVGGGYIGLEL 178

Query: 223 AAAAVGWKLDTTR-------------------YEQLYQQNGVKFVKGASIKNLEAGSDGR 263
           +A      LD T                    YE  Y   GVK +KG       A  +G 
Sbjct: 179 SAVLRINNLDVTMVFPEPWCMPRLFTADIAAFYETYYTNKGVKIIKGTVASGFTAQPNGE 238

Query: 264 VAAVKLEDGSTIDADTIVIGIGAKPTVSPFERVGLNSSVGGIQVDGQFRTRMPGIFAIGD 323
           V  V+L+DG T++AD +++G+GAKP  S F +  +    GGI+ D  F+T +P ++A+GD
Sbjct: 239 VKEVQLKDGRTLEADIVIVGVGAKPLTSLF-KGQVEEDKGGIKTDAFFKTSVPDVYAVGD 297

Query: 324 VAAFPLKMYDRTARVEHVDHARQSAQHCIKALLSAQ----THTYDYLPYFYSRVFEYEGS 379
           VA FPLKMY    RVEHVDH+R+SA+  +KA+ +A+       YDYLP+FYSR F+    
Sbjct: 298 VATFPLKMYGDVRRVEHVDHSRKSAEQAVKAIKAAEGGAAVEEYDYLPFFYSRSFD---- 353

Query: 380 PRKVWWQFFGDNVGETIEIG-----NFDPKIATFWIDSGKLKGVLVESGSPEEFQLLPTL 434
              + WQF+GDNVG+++  G     N  P+   +W+  GK+ G  +E GS +E + L  +
Sbjct: 354 ---LSWQFYGDNVGDSVLFGDSNPSNPKPRFGAYWVQGGKVVGAFMEGGSGDENKALAKV 410

Query: 435 ARSQP 439
           A+++P
Sbjct: 411 AKARP 415

Catalyzes the conversion of monodehydroascorbate to ascorbate, oxidizing NADH in the process.

Arabidopsis thaliana (taxid: 3702)

EC: 1

EC: .

EC: 6

EC: .

EC: 5

EC: .

EC: 4

>sp|Q42711|MDARS_CUCSA Monodehydroascorbate reductase, seedling isozyme OS=Cucumis sativus PE=2 SV=1

 Score =  317 bits (813), Expect = 1e-85,   Method: Compositional matrix adjust.
 Identities = 190/433 (43%), Positives = 265/433 (61%), Gaps = 44/433 (10%)

Query: 47  FANENREFVIVGGGNAAGYAARTFVEHGMADGRLCIVSKEAYAPYERPALTKGYLFPLDK 106
            A+E  ++VI+GGG AAGYAAR FV+ G+  G L I+SKEA APYERPAL+K YLFP  +
Sbjct: 1   MADETFKYVILGGGVAAGYAAREFVKQGLNPGELAIISKEAVAPYERPALSKAYLFP--E 58

Query: 107 KPARLPGFHTCVGSGGERQTPEWYKEKGIEMIYQDPVTSIDIEKQTLITNSGKLLKYGSL 166
            PARLPGFH CVGSGGER  P+WYKEKGIE+I    +   D+  + L +  GK+  Y +L
Sbjct: 59  SPARLPGFHVCVGSGGERLLPDWYKEKGIELILSTEIVEADLPAKRLRSAHGKIYNYQTL 118

Query: 167 IVATGCTASRFPE--KIGGYLPGVHYIRDVADADALISSLEKAKK---VVVVGGGYIGME 221
           I+ATG T  +  +    G     + Y+R++ DAD L+ ++ KAK+   VVVVGGGYIG+E
Sbjct: 119 IIATGSTVIKLSDFGVQGADAKNIFYLREIDDADQLVEAI-KAKENGKVVVVGGGYIGLE 177

Query: 222 VAAAAVGWKLDTTR-------------------YEQLYQQNGVKFVKGASIKNLEAGSDG 262
           + AA      D +                    YE  Y Q G+  +KG         ++G
Sbjct: 178 LGAALRINNFDVSMVYPEPWCMPRLFTPEIAAFYEGYYAQKGITIIKGTVAVGFTVDTNG 237

Query: 263 RVAAVKLEDGSTIDADTIVIGIGAKPTVSPFERVGLNSSVGGIQVDGQFRTRMPGIFAIG 322
            V  VKL+DG  ++AD +V+G+GA+P  S F +  +    GGI+ D  F+T +P ++A+G
Sbjct: 238 EVKEVKLKDGRVLEADIVVVGVGARPLTSLF-KGQIVEEKGGIKTDEFFKTSVPDVYAVG 296

Query: 323 DVAAFPLKMYDRTARVEHVDHARQSAQHCIKALLSAQ----THTYDYLPYFYSRVFEYEG 378
           DVA FPLK+Y+   RVEHVDH+R+SA+  +KA+ +++       YDYLPYFYSR F+   
Sbjct: 297 DVATFPLKLYNELRRVEHVDHSRKSAEQAVKAIKASEEGKAIEEYDYLPYFYSRSFD--- 353

Query: 379 SPRKVWWQFFGDNVGETIEIGNFDP-----KIATFWIDSGKLKGVLVESGSPEEFQLLPT 433
               + WQF+GDNVG+ +  G+  P     K  ++WI  GK+ G  +ESGSPEE + +  
Sbjct: 354 ----LSWQFYGDNVGDAVLFGDNSPDSATHKFGSYWIKDGKVVGAFLESGSPEENKAIAK 409

Query: 434 LARSQPFVDKAKL 446
           +AR QP V+ + L
Sbjct: 410 VARIQPSVESSDL 422

Catalyzes the conversion of monodehydroascorbate to ascorbate, oxidizing NADH in the process.

Cucumis sativus (taxid: 3659)

EC: 1

EC: .

EC: 6

EC: .

EC: 5

EC: .

EC: 4

>sp|Q93WJ8|MDAR4_ARATH Probable monodehydroascorbate reductase, cytoplasmic isoform 4 OS=Arabidopsis thaliana GN=At5g03630 PE=1 SV=1

 Score =  317 bits (811), Expect = 2e-85,   Method: Compositional matrix adjust.
 Identities = 168/407 (41%), Positives = 239/407 (58%), Gaps = 42/407 (10%)

Query: 68  RTFVEHGMADGRLCIVSKEAYAPYERPALTKGYLFPLDKKPARLPGFHTCVGSGGERQTP 127
           R F   G+  G L I+S+E   PYERPAL+KGY+   +K  A LP F+   G GGERQ P
Sbjct: 23  REFFNQGVKPGELAIISREQVPPYERPALSKGYIHLENK--ATLPNFYVAAGIGGERQFP 80

Query: 128 EWYKEKGIEMIYQDPVTSIDIEKQTLITNSGKLLKYGSLIVATGCTASRFPE--KIGGYL 185
           +WYKEKGIE+I    +   D+  +TL++ +G++ KY +L+ ATG +  R  +    G   
Sbjct: 81  QWYKEKGIELILGTEIVKADLAAKTLVSGTGQVFKYQTLLAATGSSVIRLSDFGVPGADA 140

Query: 186 PGVHYIRDVADADALISSLEKAKK--VVVVGGGYIGMEVAAAAVGWKLDTTR-------- 235
             + Y+R++ DAD L  ++E  +K   VVVGGGYIG+E+ AA     LD T         
Sbjct: 141 KNIFYLRELEDADYLAYAMETKEKGKAVVVGGGYIGLELGAALKANNLDVTMVYPEPWCM 200

Query: 236 -----------YEQLYQQNGVKFVKGASIKNLEAGSDGRVAAVKLEDGSTIDADTIVIGI 284
                      YE  Y   G+  VKG         S+G V  VKL+DG T++AD +++G+
Sbjct: 201 PRLFTAGIASFYEGYYANKGINIVKGTVASGFTTNSNGEVTEVKLKDGRTLEADIVIVGV 260

Query: 285 GAKPTVSPFERVGLNSSVGGIQVDGQFRTRMPGIFAIGDVAAFPLKMYDRTARVEHVDHA 344
           G +P +S F +  +    GG++ DG F+T +P ++AIGDVA FP+K+Y+   RVEHVDHA
Sbjct: 261 GGRPIISLF-KDQVEEEKGGLKTDGFFKTSLPDVYAIGDVATFPMKLYNEMRRVEHVDHA 319

Query: 345 RQSAQHCIKALLSAQTHT----YDYLPYFYSRVFEYEGSPRKVWWQFFGDNVGETIEIGN 400
           R+SA+  +KA+ +A+       YDYLPYFYSR F+       + WQF+GDNVGE++  G+
Sbjct: 320 RKSAEQAVKAIKAAEEGNSIPEYDYLPYFYSRAFD-------LSWQFYGDNVGESVLFGD 372

Query: 401 FD-----PKIATFWIDSGKLKGVLVESGSPEEFQLLPTLARSQPFVD 442
            D     PK  ++WI   K+ G  +E GSPEE   +  LAR+QP V+
Sbjct: 373 NDPESPKPKFGSYWIKERKVVGAFLEGGSPEENNAIAKLARAQPSVE 419

Catalyzes the conversion of monodehydroascorbate to ascorbate, oxidizing NADH in the process.

Arabidopsis thaliana (taxid: 3702)

EC: 1

EC: .

EC: 6

EC: .

EC: 5

EC: .

EC: 4

>sp|Q9LK94|MDAR2_ARATH Probable monodehydroascorbate reductase, cytoplasmic isoform 2 OS=Arabidopsis thaliana GN=At3g27820 PE=2 SV=1

 Score =  306 bits (785), Expect = 2e-82,   Method: Compositional matrix adjust.
 Identities = 160/398 (40%), Positives = 241/398 (60%), Gaps = 36/398 (9%)

Query: 70  FVEHGMADGRLCIVSKEAYAPYERPALTKGYLFPLDKKPARLPGFHTCVGSGGERQTPEW 129
           F   G++DG LCI+S+E  APYERPAL+KG+L P  + PARLP FHTCVG+  E+ TP+W
Sbjct: 23  FTRRGVSDGELCIISEEPVAPYERPALSKGFLLP--EAPARLPSFHTCVGANDEKLTPKW 80

Query: 130 YKEKGIEMIYQDPVTSIDIEKQTLITNSGKLLKYGSLIVATGCTASRFPE--KIGGYLPG 187
           YK+ GIE++    V S+D+ ++TL++++G+ + Y  LI+ATG  A +  E    G     
Sbjct: 81  YKDHGIELVLGTRVKSVDVRRKTLLSSTGETISYKFLIIATGARALKLEEFGVEGSDAEN 140

Query: 188 VHYIRDVADADALISSLEKAK--KVVVVGGGYIGMEVAAAAVGWKLDTTR---------- 235
           V Y+RD+ADA+ L + ++ +     VV+GGGYIGME AA+ V  K++ T           
Sbjct: 141 VCYLRDLADANRLATVIQSSSNGNAVVIGGGYIGMECAASLVINKINVTMVFPEAHCMAR 200

Query: 236 ---------YEQLYQQNGVKFVKGASIKNLEAGSDGRVAAVKLEDGSTIDADTIVIGIGA 286
                    YE  Y+  GVKF+KG  + + E  S+ +V AV L+DGS + AD +V+GIG 
Sbjct: 201 LFTPKIASLYEDYYRAKGVKFIKGTVLTSFEFDSNKKVTAVNLKDGSHLPADLVVVGIGI 260

Query: 287 KPTVSPFERVGLNSSVGGIQVDGQFRTRMPGIFAIGDVAAFPLKMYDRTARVEHVDHARQ 346
           +P  S FE   L    GGI+V+ + ++    ++AIGDVA FP+K++    R+EHVD AR+
Sbjct: 261 RPNTSLFEG-QLTIEKGGIKVNSRMQSSDSSVYAIGDVATFPVKLFGEMRRLEHVDSARK 319

Query: 347 SAQHCIKALLS-AQTHTYDYLPYFYSRVFEYEGSPRKVWWQFFGDNVGETIEIGNFD--P 403
           SA+H + A++   +T  +DYLP+FYSRVF +        WQF+GD  G+ +  G ++   
Sbjct: 320 SARHAVSAIMDPIKTGDFDYLPFFYSRVFAFS-------WQFYGDPTGDVVHFGEYEDGK 372

Query: 404 KIATFWIDSGKLKGVLVESGSPEEFQLLPTLARSQPFV 441
               +W+  G L G  +E G+ EE++ +    + +P V
Sbjct: 373 SFGAYWVKKGHLVGSFLEGGTKEEYETISKATQLKPAV 410

Catalyzes the conversion of monodehydroascorbate to ascorbate, oxidizing NADH in the process.

Arabidopsis thaliana (taxid: 3702)

EC: 1

EC: .

EC: 6

EC: .

EC: 5

EC: .

EC: 4

>sp|Q9SR59|MDAR1_ARATH Probable monodehydroascorbate reductase, cytoplasmic isoform 1 OS=Arabidopsis thaliana GN=At3g09940 PE=2 SV=1

 Score =  294 bits (752), Expect = 1e-78,   Method: Compositional matrix adjust.
 Identities = 159/409 (38%), Positives = 236/409 (57%), Gaps = 45/409 (11%)

Query: 68  RTFVEHGMADGRLCIVSKEAYAPYERPALTKGYLFPLDKKPARLPGFHTCVGSGGERQTP 127
           R F   G+  G L I+SKE   P+ERP LTK Y+  L+  P  L   + C G+G  +Q P
Sbjct: 23  REFSNQGLKPGELAIISKEPVPPFERPELTKVYI-DLEVNPT-LANIYVCAGTGEAKQYP 80

Query: 128 EWYKEKGIEMIYQDPVTSIDIEKQTLITNSGKLLKYGSLIVATGCTASRFPEKIG---GY 184
            WYKEKGI++I    +   D+  +TL+++ GK+ KY +L++ATG T  R  E IG     
Sbjct: 81  NWYKEKGIDLIVGTEIVKADLASKTLVSDDGKIYKYQTLLIATGSTNIRLSE-IGVQEAD 139

Query: 185 LPGVHYIRDVADADALISSLE---KAKKVVVVGGGYIGMEVAAAAVGWKLDTTR------ 235
           +  + Y+R++ D+D L  ++E   +  K V++GGG++G+E+++A      + T       
Sbjct: 140 VKNIFYLREIEDSDELALAMELYVQRGKAVIIGGGFLGLEISSALRANNHEVTMVFPEPW 199

Query: 236 -------------YEQLYQQNGVKFVKGASIKNLEAGSDGRVAAVKLEDGSTIDADTIVI 282
                        YE  Y   G+K +KG         SDG V  VKLEDG T++A+ +V 
Sbjct: 200 LVHRFFTAEIASFYESYYANKGIKIIKGTVATGFSTNSDGEVTEVKLEDGRTLEANIVVA 259

Query: 283 GIGAKPTVSPFERVGLNSSVGGIQVDGQFRTRMPGIFAIGDVAAFPLKMYDRTARVEHVD 342
           G+GA+P  S F +  L    GGI+ DG F+T +P ++A+GDVA FP+KMY  T RVEH D
Sbjct: 260 GVGARPATSLF-KGQLEEEKGGIKTDGFFKTSVPDVYALGDVATFPMKMYGGTRRVEHAD 318

Query: 343 HARQSAQHCIKALLSAQ----THTYDYLPYFYSRVFEYEGSPRKVWWQFFGDNVGETIEI 398
           +AR+SA   +KA+ + +       YDYLPYFYSR F       K+ W+F+G+NVGE++  
Sbjct: 319 NARKSAAQAVKAIKAGEEGKTIPDYDYLPYFYSRFF-------KLSWEFYGENVGESVLF 371

Query: 399 GNFD-----PKIATFWIDSGKLKGVLVESGSPEEFQLLPTLARSQPFVD 442
           G+ D     PK  T+W+  GK+ GV +E G+ EE + +  +AR+QP V+
Sbjct: 372 GDNDPKSPKPKFGTYWVKDGKVVGVFLEGGTQEEHKAIAKVARAQPSVE 420

Catalyzes the conversion of monodehydroascorbate to ascorbate, oxidizing NADH in the process.

Arabidopsis thaliana (taxid: 3702)

EC: 1

EC: .

EC: 6

EC: .

EC: 5

EC: .

EC: 4

>sp|P43494|THCD_RHOER Rhodocoxin reductase OS=Rhodococcus erythropolis GN=thcD PE=1 SV=2

 Score =  152 bits (383), Expect = 6e-36,   Method: Compositional matrix adjust.
 Identities = 111/343 (32%), Positives = 160/343 (46%), Gaps = 40/343 (11%)

Query: 54  FVIVGGGNAAGYAARTFVEHGMADGRLCIVSKEAYAPYERPALTKGYLF--PLDKKPARL 111
            VI+G G A   AA +   HG + G + +V  E   PY+RP L+K YL   P  +  A  
Sbjct: 3   IVIIGSGQAGFEAAVSLRSHGFS-GTITLVGDEPGVPYQRPPLSKAYLHSDPDRESLALR 61

Query: 112 PGFHTCVGSGGERQTPEWYKEKGIEMIYQDPVTSIDIEKQTLITNSGKLLKYGSLIVATG 171
           P               +++ +  I +    PV  ID + Q +       ++Y  LI+ATG
Sbjct: 62  PA--------------QYFDDHRITLTCGKPVVRIDRDAQRVELIDATAIEYDHLILATG 107

Query: 172 CTASRFPEKIGGYLPGVHYIRDVADADALISSLEKAKKVVVVGGGYIGMEVAAAAVGWKL 231
                 P   G  LPGVHY+R   +A++L SS+     +VV+G G+IG+EVAAAA    L
Sbjct: 108 ARNRLLPVP-GANLPGVHYLRTAGEAESLTSSMASCSSLVVIGAGFIGLEVAAAARKKGL 166

Query: 232 DTTRYEQL-------------------YQQNGVKFVKGASIKNLEAGSDGRVAAVKLEDG 272
           D T  E +                   + ++GV       +K + A +DGR A V    G
Sbjct: 167 DVTVVEAMDRPMARALSSVMSGYFSTAHTEHGVHMRLSTGVKTINA-ADGRAAGVTTNSG 225

Query: 273 STIDADTIVIGIGAKPTVSPFERVGLNSSVGGIQVDGQFRTRMPGIFAIGDVAAFPLKMY 332
             I AD +V+GIG  P +      GL     GI VD   RT    I AIGD AA+P+   
Sbjct: 226 DVIHADAVVVGIGVVPNIELAALTGLPVD-NGIVVDEYLRTPDENISAIGDCAAYPIPGK 284

Query: 333 DRTARVEHVDHARQSAQHCIKALLSAQTHTYDYLPYFYSRVFE 375
               R+E V +A   A+ C+ A L+  +  Y  +P+F+S  +E
Sbjct: 285 AGLVRLESVQNAVDQAR-CLAAQLTGTSTHYRSVPWFWSEQYE 326

The degradation of the thiocarbamate herbicide EPTC by cytochrome CYP116 (thcB) requires the participation of a flavoprotein, rhodocoxin reductase, and an iron-sulfur protein, rhodocoxin, to mediate the transfer of electrons from NADH to P450 for oxygen activation.

Rhodococcus erythropolis (taxid: 1833)

EC: 1

EC: .

EC: 1

EC: 8

EC: .

EC: 1

EC: .

EC: -

>sp|P16640|CAMA_PSEPU Putidaredoxin reductase OS=Pseudomonas putida GN=camA PE=1 SV=1

 Score =  137 bits (344), Expect = 2e-31,   Method: Compositional matrix adjust.
 Identities = 104/349 (29%), Positives = 161/349 (46%), Gaps = 37/349 (10%)

Query: 49  NENREFVIVGGGNAAGYAARTFVEHGMADGRLCIVSKEAYAPYERPALTKGYLFPLDKKP 108
           N N   VIVG G A    A      G  +G + +V      P+  P L+K YL       
Sbjct: 2   NANDNVVIVGTGLAGVEVAFGLRASGW-EGNIRLVGDATVIPHHLPPLSKAYL----AGK 56

Query: 109 ARLPGFHTCVGSGGERQTPEWYKEKGIEMIYQDPVTSIDIEKQTLITNSGKLLKYGSLIV 168
           A     +         +TP+ Y  + I+++    VT+I+ ++Q +I + G+ L Y  L++
Sbjct: 57  ATAESLYL--------RTPDAYAAQNIQLLGGTQVTAINRDRQQVILSDGRALDYDRLVL 108

Query: 169 ATGCTASRFPEKIG--GYLPGVHYIRDVADADALISSLEKAKKVVVVGGGYIGMEVAAAA 226
           ATG      P   G  G      Y+R + DA+ +   L    ++VV+GGGYIG+EVAA A
Sbjct: 109 ATGGRPRPLPVASGAVGKANNFRYLRTLEDAECIRRQLIADNRLVVIGGGYIGLEVAATA 168

Query: 227 VGWKLDTTR-------------------YEQLYQQNGVKFVKGASIKNLEAGSD-GRVAA 266
           +   +  T                    YE L+++ GV    G  +   E  +D  +V A
Sbjct: 169 IKANMHVTLLDTAARVLERVTAPPVSAFYEHLHREAGVDIRTGTQVCGFEMSTDQQKVTA 228

Query: 267 VKLEDGSTIDADTIVIGIGAKPTVSPFERVGLNSSVGGIQVDGQFRTRMPGIFAIGDVAA 326
           V  EDG+ + AD ++ GIG  P        GL     GI ++   +T  P I A+GD A 
Sbjct: 229 VLCEDGTRLPADLVIAGIGLIPNCELASAAGLQVD-NGIVINEHMQTSDPLIMAVGDCAR 287

Query: 327 FPLKMYDRTARVEHVDHARQSAQHCIKALLSAQTHTYDYLPYFYSRVFE 375
           F  ++YDR  R+E V +A + A+  I A+L  +    +  P+F+S  +E
Sbjct: 288 FHSQLYDRWVRIESVPNALEQARK-IAAILCGKVPRDEAAPWFWSDQYE 335

The oxidation of camphor by cytochrome P450-CAM requires the participation of a flavoprotein, putidaredoxin reductase, and an iron-sulfur protein, putidaredoxin, to mediate the transfer of electrons from NADH to P450 for oxygen activation.

Pseudomonas putida (taxid: 303)

EC: 1

EC: .

EC: 1

EC: 8

EC: .

EC: 1

EC: .

EC: -

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	469
359474156	497	PREDICTED: monodehydroascorbate reductas	1.0	0.943	0.804	0.0
297742237	490	unnamed protein product [Vitis vinifera]	1.0	0.957	0.804	0.0
147834040	889	hypothetical protein VITISV_021486 [Viti	1.0	0.527	0.783	0.0
224058437	497	predicted protein [Populus trichocarpa]	0.987	0.931	0.792	0.0
194716776	486	monodehydroascorbate reductase [Picrorhi	0.982	0.948	0.783	0.0
255537579	493	monodehydroascorbate reductase, putative	0.982	0.935	0.807	0.0
350536875	482	monodehydroascorbate reductase [Solanum	0.987	0.960	0.782	0.0
110265126	482	chloroplast monodehydroascorbate reducta	0.987	0.960	0.780	0.0
46093473	486	monodehydroascorbate reductase [Brassica	0.982	0.948	0.775	0.0
30696924	493	Monodehydroascorbate reductase [Arabidop	0.982	0.935	0.769	0.0

>gi|359474156|ref|XP_002278648.2| PREDICTED: monodehydroascorbate reductase, chloroplastic [Vitis vinifera]

 Score =  793 bits (2048), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 394/490 (80%), Positives = 432/490 (88%), Gaps = 21/490 (4%)

Query: 1   MASVSNSLSFKHGLSLWCPQSPSLHRIRHSSA--KNFQRRGFVVAYSSFANENREFVIVG 58
           MAS+SNSL  KHG+SLWCPQ  SL+R R  S+   +   R + V   +FANENREFVIVG
Sbjct: 8   MASISNSLPLKHGISLWCPQHASLNRTRLPSSFGSSASARRYGVVSCAFANENREFVIVG 67

Query: 59  GGNAAGYAARTFVEHGMADGRLCIVSKEAYAPYERPALTKGYLFPLDKKPARLPGFHTCV 118
           GGNAAGYAARTFVEHGMADG+LCIVSKEA+APYERPALTKGYLFPLDKKPARLPGFHTCV
Sbjct: 68  GGNAAGYAARTFVEHGMADGKLCIVSKEAFAPYERPALTKGYLFPLDKKPARLPGFHTCV 127

Query: 119 GSGGERQTPEWYKEKGIEMIYQDPVTSIDIEKQTLITNSGKLLKYGSLIVATGCTASRFP 178
           GSGGERQTP+WYKEKGIEM+Y+DPVT IDIEKQTL+TNSGKLLKYGSLI+ATGCTASR P
Sbjct: 128 GSGGERQTPDWYKEKGIEMLYEDPVTGIDIEKQTLMTNSGKLLKYGSLIIATGCTASRLP 187

Query: 179 EKIGGYLPGVHYIRDVADADALISSLEKAKKVVVVGGGYIGMEVAAAAVGWKLDTT---- 234
           +KIGG LPGVHYIRDVADAD+LISSLEKA+KVV+VGGGYIGMEVAAAA GWKLDTT    
Sbjct: 188 DKIGGNLPGVHYIRDVADADSLISSLEKARKVVIVGGGYIGMEVAAAAAGWKLDTTIIFP 247

Query: 235 ---------------RYEQLYQQNGVKFVKGASIKNLEAGSDGRVAAVKLEDGSTIDADT 279
                          RYE+ YQ+NGVKFVKGASIKN+EAGSDG V AVKLE+GSTI+ADT
Sbjct: 248 EDHLLQRLFTPTLARRYEEFYQENGVKFVKGASIKNIEAGSDGHVTAVKLENGSTIEADT 307

Query: 280 IVIGIGAKPTVSPFERVGLNSSVGGIQVDGQFRTRMPGIFAIGDVAAFPLKMYDRTARVE 339
           I+IGIGAKP VSPFERVG+N++VGGIQVDGQFRT +PGIFAIGDVAAFPLKMY+R ARVE
Sbjct: 308 IIIGIGAKPAVSPFERVGINTTVGGIQVDGQFRTSVPGIFAIGDVAAFPLKMYNRIARVE 367

Query: 340 HVDHARQSAQHCIKALLSAQTHTYDYLPYFYSRVFEYEGSPRKVWWQFFGDNVGETIEIG 399
           HVDHAR+SAQHCI ALL+A+TH YDYLPYFYSRVFEYEGSPRK+WWQFFGDNVGET+EIG
Sbjct: 368 HVDHARRSAQHCINALLTAKTHLYDYLPYFYSRVFEYEGSPRKIWWQFFGDNVGETVEIG 427

Query: 400 NFDPKIATFWIDSGKLKGVLVESGSPEEFQLLPTLARSQPFVDKAKLQQASSVEEALEIA 459
           NFDPKIATFWIDSGKLKGVL+ESGSPEEFQLLP LARSQP VD  KLQ+ASSVEEALE+A
Sbjct: 428 NFDPKIATFWIDSGKLKGVLLESGSPEEFQLLPKLARSQPHVDMTKLQKASSVEEALELA 487

Query: 460 RAALPVEAAV 469
            A +   AAV
Sbjct: 488 HAYVQAGAAV 497

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|297742237|emb|CBI34386.3| unnamed protein product [Vitis vinifera]

 Score =  793 bits (2048), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 394/490 (80%), Positives = 432/490 (88%), Gaps = 21/490 (4%)

Query: 1   MASVSNSLSFKHGLSLWCPQSPSLHRIRHSSA--KNFQRRGFVVAYSSFANENREFVIVG 58
           MAS+SNSL  KHG+SLWCPQ  SL+R R  S+   +   R + V   +FANENREFVIVG
Sbjct: 1   MASISNSLPLKHGISLWCPQHASLNRTRLPSSFGSSASARRYGVVSCAFANENREFVIVG 60

Query: 59  GGNAAGYAARTFVEHGMADGRLCIVSKEAYAPYERPALTKGYLFPLDKKPARLPGFHTCV 118
           GGNAAGYAARTFVEHGMADG+LCIVSKEA+APYERPALTKGYLFPLDKKPARLPGFHTCV
Sbjct: 61  GGNAAGYAARTFVEHGMADGKLCIVSKEAFAPYERPALTKGYLFPLDKKPARLPGFHTCV 120

Query: 119 GSGGERQTPEWYKEKGIEMIYQDPVTSIDIEKQTLITNSGKLLKYGSLIVATGCTASRFP 178
           GSGGERQTP+WYKEKGIEM+Y+DPVT IDIEKQTL+TNSGKLLKYGSLI+ATGCTASR P
Sbjct: 121 GSGGERQTPDWYKEKGIEMLYEDPVTGIDIEKQTLMTNSGKLLKYGSLIIATGCTASRLP 180

Query: 179 EKIGGYLPGVHYIRDVADADALISSLEKAKKVVVVGGGYIGMEVAAAAVGWKLDTT---- 234
           +KIGG LPGVHYIRDVADAD+LISSLEKA+KVV+VGGGYIGMEVAAAA GWKLDTT    
Sbjct: 181 DKIGGNLPGVHYIRDVADADSLISSLEKARKVVIVGGGYIGMEVAAAAAGWKLDTTIIFP 240

Query: 235 ---------------RYEQLYQQNGVKFVKGASIKNLEAGSDGRVAAVKLEDGSTIDADT 279
                          RYE+ YQ+NGVKFVKGASIKN+EAGSDG V AVKLE+GSTI+ADT
Sbjct: 241 EDHLLQRLFTPTLARRYEEFYQENGVKFVKGASIKNIEAGSDGHVTAVKLENGSTIEADT 300

Query: 280 IVIGIGAKPTVSPFERVGLNSSVGGIQVDGQFRTRMPGIFAIGDVAAFPLKMYDRTARVE 339
           I+IGIGAKP VSPFERVG+N++VGGIQVDGQFRT +PGIFAIGDVAAFPLKMY+R ARVE
Sbjct: 301 IIIGIGAKPAVSPFERVGINTTVGGIQVDGQFRTSVPGIFAIGDVAAFPLKMYNRIARVE 360

Query: 340 HVDHARQSAQHCIKALLSAQTHTYDYLPYFYSRVFEYEGSPRKVWWQFFGDNVGETIEIG 399
           HVDHAR+SAQHCI ALL+A+TH YDYLPYFYSRVFEYEGSPRK+WWQFFGDNVGET+EIG
Sbjct: 361 HVDHARRSAQHCINALLTAKTHLYDYLPYFYSRVFEYEGSPRKIWWQFFGDNVGETVEIG 420

Query: 400 NFDPKIATFWIDSGKLKGVLVESGSPEEFQLLPTLARSQPFVDKAKLQQASSVEEALEIA 459
           NFDPKIATFWIDSGKLKGVL+ESGSPEEFQLLP LARSQP VD  KLQ+ASSVEEALE+A
Sbjct: 421 NFDPKIATFWIDSGKLKGVLLESGSPEEFQLLPKLARSQPHVDMTKLQKASSVEEALELA 480

Query: 460 RAALPVEAAV 469
            A +   AAV
Sbjct: 481 HAYVQAGAAV 490

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|147834040|emb|CAN64338.1| hypothetical protein VITISV_021486 [Vitis vinifera]

 Score =  787 bits (2033), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 394/503 (78%), Positives = 432/503 (85%), Gaps = 34/503 (6%)

Query: 1   MASVSNSLSFKHGLSLWCPQSPSLHRIRHSSA--KNFQRRGFVVAYSSFANENREFVIVG 58
           MAS+SNSL  KHG+SLWCPQ  SL+R R  S+   +   R + V   +FANENREFVIVG
Sbjct: 387 MASISNSLPLKHGISLWCPQHASLNRTRLPSSFGSSASARRYGVVSCAFANENREFVIVG 446

Query: 59  GGNAAGYAARTFVEHGMADGRLCIVSKEAYAPYERPALTKGYLFPLDKKPARLPGFHTCV 118
           GGNAAGYAARTFVEHGMADG+LCIVSKEA+APYERPALTKGYLFPLDKKPARLPGFHTCV
Sbjct: 447 GGNAAGYAARTFVEHGMADGKLCIVSKEAFAPYERPALTKGYLFPLDKKPARLPGFHTCV 506

Query: 119 GSGGERQTPEWYKEKGIEMIYQDPVTSIDIEKQTLITNSGKLLKYGSLIVATGCTASR-- 176
           GSGGERQTP+WYKEKGIEM+Y+DPVT IDIEKQTL+TNSGKLLKYGSLI+ATGCTASR  
Sbjct: 507 GSGGERQTPDWYKEKGIEMLYEDPVTGIDIEKQTLMTNSGKLLKYGSLIIATGCTASRRS 566

Query: 177 -----------FPEKIGGYLPGVHYIRDVADADALISSLEKAKKVVVVGGGYIGMEVAAA 225
                       P+KIGG LPGVHYIRDVADAD+LISSLEKA+KVV+VGGGYIGMEVAAA
Sbjct: 567 EDEFFSSPDFRLPDKIGGNLPGVHYIRDVADADSLISSLEKARKVVIVGGGYIGMEVAAA 626

Query: 226 AVGWKLDTT-------------------RYEQLYQQNGVKFVKGASIKNLEAGSDGRVAA 266
           A GWKLDTT                   RYE+ YQ+NGVKFVKGASIKN+EAGSDG V A
Sbjct: 627 AAGWKLDTTIIFPEDHLLQRLFTPTLARRYEEFYQENGVKFVKGASIKNIEAGSDGHVTA 686

Query: 267 VKLEDGSTIDADTIVIGIGAKPTVSPFERVGLNSSVGGIQVDGQFRTRMPGIFAIGDVAA 326
           VKLE+GSTI+ADTI+IGIGAKP VSPFERVG+N++VGGIQVDGQFRT +PGIFAIGDVAA
Sbjct: 687 VKLENGSTIEADTIIIGIGAKPAVSPFERVGINTTVGGIQVDGQFRTSVPGIFAIGDVAA 746

Query: 327 FPLKMYDRTARVEHVDHARQSAQHCIKALLSAQTHTYDYLPYFYSRVFEYEGSPRKVWWQ 386
           FPLKMY+R ARVEHVDHAR+SAQHCI ALL+A+TH YDYLPYFYSRVFEYEGSPRK+WWQ
Sbjct: 747 FPLKMYNRIARVEHVDHARRSAQHCINALLTAKTHLYDYLPYFYSRVFEYEGSPRKIWWQ 806

Query: 387 FFGDNVGETIEIGNFDPKIATFWIDSGKLKGVLVESGSPEEFQLLPTLARSQPFVDKAKL 446
           FFGDNVGET+EIGNFDPKIATFWIDSGKLKGVL+ESGSPEEFQLLP LARSQP VD  KL
Sbjct: 807 FFGDNVGETVEIGNFDPKIATFWIDSGKLKGVLLESGSPEEFQLLPKLARSQPQVDMTKL 866

Query: 447 QQASSVEEALEIARAALPVEAAV 469
           Q+ASSVEEALE+A A +   AAV
Sbjct: 867 QKASSVEEALELAHATVQAGAAV 889

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224058437|ref|XP_002299509.1| predicted protein [Populus trichocarpa] gi|118488230|gb|ABK95934.1| unknown [Populus trichocarpa] gi|222846767|gb|EEE84314.1| predicted protein [Populus trichocarpa]

 Score =  778 bits (2009), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 389/491 (79%), Positives = 428/491 (87%), Gaps = 28/491 (5%)

Query: 5   SNSLSFKHGLSLWCPQSPSLHRIRHSSA------KNFQRRGFVVAYSS-FANENREFVIV 57
           SN +SFKHGLSLWCPQS  LHR   SS       K F R   V A SS FANENRE+VIV
Sbjct: 9   SNPMSFKHGLSLWCPQSSPLHRTLQSSPSSSIGFKTFFRNHVVAASSSSFANENREYVIV 68

Query: 58  GGGNAAGYAARTFVEHGMADGRLCIVSKEAYAPYERPALTKGYLFPLDKKPARLPGFHTC 117
           GGGNAAGYAAR+FVEHGMADG+LCIV++EAYAPYERPALTK YLFPLDKKPARLPGFHTC
Sbjct: 69  GGGNAAGYAARSFVEHGMADGKLCIVTREAYAPYERPALTKAYLFPLDKKPARLPGFHTC 128

Query: 118 VGSGGERQTPEWYKEKGIEMIYQDPVTSIDIEKQTLITNSGKLLKYGSLIVATGCTASRF 177
           VGSGGERQTP+WYKEKGIEM+Y+DPVT IDIEKQT  T SGKLLKYG+LIVATGC+ASRF
Sbjct: 129 VGSGGERQTPDWYKEKGIEMLYEDPVTGIDIEKQTATTISGKLLKYGTLIVATGCSASRF 188

Query: 178 PEKIGGYLPGVHYIRDVADADALISSLEKAKKVVVVGGGYIGMEVAAAAVGWKLDTT--- 234
           PEKIGG LPGVHYIRDVADAD+LISSLEKA K+V+VGGGYIGMEVAAAAV WKLDTT   
Sbjct: 189 PEKIGGNLPGVHYIRDVADADSLISSLEKAHKLVIVGGGYIGMEVAAAAVAWKLDTTIIF 248

Query: 235 ----------------RYEQLYQQNGVKFVKGASIKNLEAGSDGRVAAVKLEDGSTIDAD 278
                           +YE+LYQ+NGVKF+KGASIKNLEA SDG VAA+KLE+GSTI+AD
Sbjct: 249 PENHLMQRLFTPSLAQKYEELYQENGVKFIKGASIKNLEASSDGHVAAIKLENGSTIEAD 308

Query: 279 TIVIGIGAKPTVSPFERVGLNSSVGGIQVDGQFRTRMPGIFAIGDVAAFPLKMYDRTARV 338
            ++IGIGAKP V PFER+GLN+SVGGIQVDGQFRT +PGIFAIGDVAAFPLKMY+R ARV
Sbjct: 309 MVIIGIGAKPAVGPFERLGLNNSVGGIQVDGQFRTGIPGIFAIGDVAAFPLKMYNRMARV 368

Query: 339 EHVDHARQSAQHCIKALLSAQTHTYDYLPYFYSRVFEYEGSPRKVWWQFFGDNVGETIEI 398
           EHVDHAR+SAQHC+K+LL+A T +YDYLPYFYSRVFEYEGSPRKVWWQFFGDNVGETI++
Sbjct: 369 EHVDHARRSAQHCVKSLLTAHTSSYDYLPYFYSRVFEYEGSPRKVWWQFFGDNVGETIQV 428

Query: 399 GNFDPKIATFWIDSGKLKGVLVESGSPEEFQLLPTLARSQPFVDKAKLQQASSVEEALEI 458
           GNFDPKIATFWIDSGKLKGVL+ESGSPEEFQLLP LA+SQP VDK+KLQ ASSVEEALEI
Sbjct: 429 GNFDPKIATFWIDSGKLKGVLLESGSPEEFQLLPELAKSQPIVDKSKLQSASSVEEALEI 488

Query: 459 ARAALPVEAAV 469
           AR +L  +AAV
Sbjct: 489 ARTSL--QAAV 497

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|194716776|gb|ACF93237.1| monodehydroascorbate reductase [Picrorhiza kurrooa]

 Score =  769 bits (1985), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 379/484 (78%), Positives = 422/484 (87%), Gaps = 23/484 (4%)

Query: 1   MASVSNSLSFKHGLSLWCPQSPSLHRIRHS---SAKNFQRRGFVVAYSSFANENREFVIV 57
           M+S+SN+LSFKHGLSLWCP S S+++I      S+K F+RR F V  SSFANENREFVIV
Sbjct: 1   MSSISNALSFKHGLSLWCPHSTSVNQISQPCSVSSKIFRRR-FSVLASSFANENREFVIV 59

Query: 58  GGGNAAGYAARTFVEHGMADGRLCIVSKEAYAPYERPALTKGYLFPLDKKPARLPGFHTC 117
           GGGNA+GYAARTFVEHGMADG+LCIVSKEAY PYERPALTK YLFPLDKKPARLPGFHTC
Sbjct: 60  GGGNASGYAARTFVEHGMADGKLCIVSKEAYVPYERPALTKAYLFPLDKKPARLPGFHTC 119

Query: 118 VGSGGERQTPEWYKEKGIEMIYQDPVTSIDIEKQTLITNSGKLLKYGSLIVATGCTASRF 177
           VG+GGERQTP+WYKEKGIEM+++DPV  ID EKQTL TNSGKLLKYGSLI+ATGCTASRF
Sbjct: 120 VGAGGERQTPDWYKEKGIEMLHEDPVADIDTEKQTLTTNSGKLLKYGSLIIATGCTASRF 179

Query: 178 PEKIGGYLPGVHYIRDVADADALISSLEKAKKVVVVGGGYIGMEVAAAAVGWKLDTT--- 234
           P+KIGG LPGVHY+RDVADA++LISSLEK+KKVVVVGGGYIGMEVAAA V WKLDTT   
Sbjct: 180 PDKIGGNLPGVHYVRDVADANSLISSLEKSKKVVVVGGGYIGMEVAAATVAWKLDTTIIF 239

Query: 235 ----------------RYEQLYQQNGVKFVKGASIKNLEAGSDGRVAAVKLEDGSTIDAD 278
                           +YE LY+  GV FVKGASIK+LEAGSDGRV+ VKLE+GS I+AD
Sbjct: 240 PEDHLMTRLFTPSLAQKYEDLYKDYGVNFVKGASIKSLEAGSDGRVSGVKLENGSIIEAD 299

Query: 279 TIVIGIGAKPTVSPFERVGLNSSVGGIQVDGQFRTRMPGIFAIGDVAAFPLKMYDRTARV 338
           T+VIGIG KP V PFE VGLN +VGGIQVDG FRT +PGIFAIGDVAAFPLK+YDR  RV
Sbjct: 300 TVVIGIGGKPAVGPFESVGLNKTVGGIQVDGLFRTSIPGIFAIGDVAAFPLKIYDRITRV 359

Query: 339 EHVDHARQSAQHCIKALLSAQTHTYDYLPYFYSRVFEYEGSPRKVWWQFFGDNVGETIEI 398
           EHVDHAR+SAQHC+K+LL+A T TYDYLP FYSRVFE+EGSPRKVWWQFFGDNVGET+E+
Sbjct: 360 EHVDHARRSAQHCVKSLLTAHTDTYDYLPLFYSRVFEHEGSPRKVWWQFFGDNVGETVEV 419

Query: 399 GNFDPKIATFWIDSGKLKGVLVESGSPEEFQLLPTLARSQPFVDKAKLQQASSVEEALEI 458
           GNFDPKIATFWIDSGKLKGVL+ESGSPEEFQLLP LARSQP VD AKLQ+ASSV+EALEI
Sbjct: 420 GNFDPKIATFWIDSGKLKGVLLESGSPEEFQLLPKLARSQPSVDVAKLQKASSVDEALEI 479

Query: 459 ARAA 462
           A+A+
Sbjct: 480 AQAS 483

Source: Picrorhiza kurrooa

Species: Picrorhiza kurrooa

Genus: Picrorhiza

Family: Plantaginaceae

Order: Lamiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|255537579|ref|XP_002509856.1| monodehydroascorbate reductase, putative [Ricinus communis] gi|223549755|gb|EEF51243.1| monodehydroascorbate reductase, putative [Ricinus communis]

 Score =  766 bits (1979), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 391/484 (80%), Positives = 430/484 (88%), Gaps = 23/484 (4%)

Query: 1   MASVSNSLSFKHGLSLWCPQSPSLHRIRHSS--AKNFQRRGFVVAYSSFANENREFVIVG 58
           MA++SNSL  KHGLSLWCP S SL+R  H+   A     R +VV  S+F+NENREFVIVG
Sbjct: 8   MATISNSLPLKHGLSLWCPHSSSLNRTFHTPPIAYRIVHRNYVV--SAFSNENREFVIVG 65

Query: 59  GGNAAGYAARTFVEHGMADGRLCIVSKEAYAPYERPALTKGYLFPLDKKPARLPGFHTCV 118
           GGNAAGYAARTFVEHGMADGRLCIV+KE +APYERPALTK YLFPLDKKPARLPGFHTCV
Sbjct: 66  GGNAAGYAARTFVEHGMADGRLCIVTKEPHAPYERPALTKAYLFPLDKKPARLPGFHTCV 125

Query: 119 GSGGERQTPEWYKEKGIEMIYQDPVTSIDIEKQTLITNSGKLLKYGSLIVATGCTASRFP 178
           GSGGERQTP+WY+EKGIEM+Y+DPVTSIDIEKQTL TNSGKLLKYG+LI+ATG TASRFP
Sbjct: 126 GSGGERQTPDWYQEKGIEMLYEDPVTSIDIEKQTLGTNSGKLLKYGTLIIATGSTASRFP 185

Query: 179 EKIGGYLPGVHYIRDVADADALISSLEKAKKVVVVGGGYIGMEVAAAAVGWKLDTT---- 234
           EKIGG LPGVHYIRDVADAD+LISSL+KA+KVVVVGGGYIGMEVAAAAVGW LDTT    
Sbjct: 186 EKIGGSLPGVHYIRDVADADSLISSLDKARKVVVVGGGYIGMEVAAAAVGWNLDTTIIFP 245

Query: 235 ---------------RYEQLYQQNGVKFVKGASIKNLEAGSDGRVAAVKLEDGSTIDADT 279
                          RYE+LY++NGVKF+KGASIKNLEAGSDG VA VKLEDGS I+ADT
Sbjct: 246 EKHLLQRLFTPSLAQRYEELYKENGVKFLKGASIKNLEAGSDGHVATVKLEDGSIIEADT 305

Query: 280 IVIGIGAKPTVSPFERVGLNSSVGGIQVDGQFRTRMPGIFAIGDVAAFPLKMYDRTARVE 339
           +VIGIGAKP VSPFE+VGLN++VGGIQVDGQFRT  PGIFAIGDVAAFPLKMY+RTARVE
Sbjct: 306 VVIGIGAKPAVSPFEQVGLNATVGGIQVDGQFRTNKPGIFAIGDVAAFPLKMYNRTARVE 365

Query: 340 HVDHARQSAQHCIKALLSAQTHTYDYLPYFYSRVFEYEGSPRKVWWQFFGDNVGETIEIG 399
           HVDHAR+SA+HC+KALLSAQT TYDYLPYFYSRVFEYEGSPRK+WWQFFGDNVGE +EIG
Sbjct: 366 HVDHARRSARHCVKALLSAQTSTYDYLPYFYSRVFEYEGSPRKIWWQFFGDNVGEAVEIG 425

Query: 400 NFDPKIATFWIDSGKLKGVLVESGSPEEFQLLPTLARSQPFVDKAKLQQASSVEEALEIA 459
           NFDPKIATFWIDSGKLKG+L+ESGS EEFQLLP LARSQP VDK+KL +ASSVEEALEIA
Sbjct: 426 NFDPKIATFWIDSGKLKGILLESGSAEEFQLLPKLARSQPSVDKSKLLKASSVEEALEIA 485

Query: 460 RAAL 463
           +A+L
Sbjct: 486 QASL 489

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|350536875|ref|NP_001234013.1| monodehydroascorbate reductase [Solanum lycopersicum] gi|195542238|gb|AAZ66138.2| monodehydroascorbate reductase [Solanum lycopersicum] gi|299507810|gb|ADJ21816.1| monodehydroascorbate reductase [Solanum lycopersicum var. cerasiforme]

 Score =  763 bits (1970), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 377/482 (78%), Positives = 419/482 (86%), Gaps = 19/482 (3%)

Query: 1   MASVSNSLSFKHGLSLWCPQSPSLHRIRHSSAKNFQRRGFVVAYSSFANENREFVIVGGG 60
           MA+  N++S K GLSLWCPQS  L+RI   S  +   R   VA SSF NENRE+V+VGGG
Sbjct: 1   MATTPNTMSIKQGLSLWCPQSAVLNRISRVSVPSRSFRRSFVAASSFDNENREYVVVGGG 60

Query: 61  NAAGYAARTFVEHGMADGRLCIVSKEAYAPYERPALTKGYLFPLDKKPARLPGFHTCVGS 120
           NAAGYAARTFVEHG A+G+LCIV+KE YAPYERPALTK YLFPLDKKPARLPGFHTCVG+
Sbjct: 61  NAAGYAARTFVEHGQANGKLCIVTKEPYAPYERPALTKAYLFPLDKKPARLPGFHTCVGA 120

Query: 121 GGERQTPEWYKEKGIEMIYQDPVTSIDIEKQTLITNSGKLLKYGSLIVATGCTASRFPEK 180
           GGERQTP+WYKE+GIEM+Y+DPVT IDIEKQTL TNSGKLLKYG+LI+ATGCTASRFPEK
Sbjct: 121 GGERQTPDWYKEQGIEMLYEDPVTGIDIEKQTLTTNSGKLLKYGTLIIATGCTASRFPEK 180

Query: 181 IGGYLPGVHYIRDVADADALISSLEKAKKVVVVGGGYIGMEVAAAAVGWKLDTT------ 234
           IGG LPGVHYIRDVADAD+LISSL KAKK+VVVGGGYIGMEVAAAAV WKLDTT      
Sbjct: 181 IGGNLPGVHYIRDVADADSLISSLGKAKKLVVVGGGYIGMEVAAAAVAWKLDTTIIFPEE 240

Query: 235 -------------RYEQLYQQNGVKFVKGASIKNLEAGSDGRVAAVKLEDGSTIDADTIV 281
                        +YEQLYQ +GVKFVKGA IK+LE+G D RV AVKLEDGS+I+ DT+V
Sbjct: 241 HLLSRLFTPSLAQKYEQLYQDSGVKFVKGAKIKHLESGPDSRVTAVKLEDGSSIETDTVV 300

Query: 282 IGIGAKPTVSPFERVGLNSSVGGIQVDGQFRTRMPGIFAIGDVAAFPLKMYDRTARVEHV 341
           IGIGAKP VSPF+ VGLN++VGGI+VDGQFRT +PGIFAIGDVAAFPLK+Y+R ARVEHV
Sbjct: 301 IGIGAKPAVSPFDMVGLNNTVGGIEVDGQFRTNIPGIFAIGDVAAFPLKIYNRIARVEHV 360

Query: 342 DHARQSAQHCIKALLSAQTHTYDYLPYFYSRVFEYEGSPRKVWWQFFGDNVGETIEIGNF 401
           DHAR+SAQHCIK+LL+A THTYDYLPYFYSRVFEYEGS RKVWWQFFGDNVGE +E+GNF
Sbjct: 361 DHARKSAQHCIKSLLTAHTHTYDYLPYFYSRVFEYEGSSRKVWWQFFGDNVGEAVEVGNF 420

Query: 402 DPKIATFWIDSGKLKGVLVESGSPEEFQLLPTLARSQPFVDKAKLQQASSVEEALEIARA 461
           DPK+ATFWIDSGKLKGVL+ESGSPEEFQLLP LARSQP VD AKLQ ASSVEEALEIA+A
Sbjct: 421 DPKVATFWIDSGKLKGVLLESGSPEEFQLLPKLARSQPSVDIAKLQNASSVEEALEIAQA 480

Query: 462 AL 463
           +L
Sbjct: 481 SL 482

Source: Solanum lycopersicum

Species: Solanum lycopersicum

Genus: Solanum

Family: Solanaceae

Order: Solanales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|110265126|gb|ABG57052.1| chloroplast monodehydroascorbate reductase [Solanum lycopersicum]

 Score =  761 bits (1965), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 376/482 (78%), Positives = 419/482 (86%), Gaps = 19/482 (3%)

Query: 1   MASVSNSLSFKHGLSLWCPQSPSLHRIRHSSAKNFQRRGFVVAYSSFANENREFVIVGGG 60
           MA+  N++S K GLSLWCPQS  L+RI   S  +   R   VA SSF NENRE+V+VGGG
Sbjct: 1   MATTPNTMSIKQGLSLWCPQSAVLNRISRVSVPSRSFRRSFVAASSFDNENREYVVVGGG 60

Query: 61  NAAGYAARTFVEHGMADGRLCIVSKEAYAPYERPALTKGYLFPLDKKPARLPGFHTCVGS 120
           NAAGYAARTFVEHG A+G+LCIV+KE YAPYERPALTK YLFPLDKKPARLPGFHTCVG+
Sbjct: 61  NAAGYAARTFVEHGQANGKLCIVTKEPYAPYERPALTKAYLFPLDKKPARLPGFHTCVGA 120

Query: 121 GGERQTPEWYKEKGIEMIYQDPVTSIDIEKQTLITNSGKLLKYGSLIVATGCTASRFPEK 180
           GGERQTP+WYKE+GIEM+Y+DPVT IDIEKQTL TNSGKLLKYG+LI+ATGCTASRFPEK
Sbjct: 121 GGERQTPDWYKEQGIEMLYEDPVTGIDIEKQTLTTNSGKLLKYGTLIIATGCTASRFPEK 180

Query: 181 IGGYLPGVHYIRDVADADALISSLEKAKKVVVVGGGYIGMEVAAAAVGWKLDTT------ 234
           IGG LPGVHYIRDVADAD+LISSL KAKK+VVVGGGYIGMEVAAAAV WKLDTT      
Sbjct: 181 IGGNLPGVHYIRDVADADSLISSLGKAKKLVVVGGGYIGMEVAAAAVAWKLDTTIIFPEE 240

Query: 235 -------------RYEQLYQQNGVKFVKGASIKNLEAGSDGRVAAVKLEDGSTIDADTIV 281
                        +YEQLYQ +GVKFVKGA IK+LE+G D RV AVKLEDGS+I+ DT+V
Sbjct: 241 HLLSRLFTPSLAQKYEQLYQDSGVKFVKGAKIKHLESGPDSRVTAVKLEDGSSIETDTVV 300

Query: 282 IGIGAKPTVSPFERVGLNSSVGGIQVDGQFRTRMPGIFAIGDVAAFPLKMYDRTARVEHV 341
           IGIGAKP VSPF+ VGLN++VGGI+VDGQFRT +PGIFAIGDVAAFPLK+Y+R ARVEHV
Sbjct: 301 IGIGAKPAVSPFDMVGLNNTVGGIEVDGQFRTNIPGIFAIGDVAAFPLKIYNRIARVEHV 360

Query: 342 DHARQSAQHCIKALLSAQTHTYDYLPYFYSRVFEYEGSPRKVWWQFFGDNVGETIEIGNF 401
           DHAR+SAQHCIK+LL+A THT+DYLPYFYSRVFEYEGS RKVWWQFFGDNVGE +E+GNF
Sbjct: 361 DHARKSAQHCIKSLLTAHTHTHDYLPYFYSRVFEYEGSSRKVWWQFFGDNVGEAVEVGNF 420

Query: 402 DPKIATFWIDSGKLKGVLVESGSPEEFQLLPTLARSQPFVDKAKLQQASSVEEALEIARA 461
           DPK+ATFWIDSGKLKGVL+ESGSPEEFQLLP LARSQP VD AKLQ ASSVEEALEIA+A
Sbjct: 421 DPKVATFWIDSGKLKGVLLESGSPEEFQLLPKLARSQPSVDIAKLQNASSVEEALEIAQA 480

Query: 462 AL 463
           +L
Sbjct: 481 SL 482

Source: Solanum lycopersicum

Species: Solanum lycopersicum

Genus: Solanum

Family: Solanaceae

Order: Solanales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|46093473|dbj|BAD14933.1| monodehydroascorbate reductase [Brassica oleracea]

 Score =  746 bits (1925), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 377/486 (77%), Positives = 410/486 (84%), Gaps = 25/486 (5%)

Query: 1   MASVSNSLSFKHGLSLWCPQSPSLHR---IRHSS-AKNFQRRGFVVAYSSFANENREFVI 56
           MA  S +L  K GLSLWCP SPSL R    R S        RG V A  SFANENREFVI
Sbjct: 1   MALASTTLPAKTGLSLWCPTSPSLARRLPARFSPIGSRIASRGVVTA--SFANENREFVI 58

Query: 57  VGGGNAAGYAARTFVEHGMADGRLCIVSKEAYAPYERPALTKGYLFPLDKKPARLPGFHT 116
           +GGGNAAGYAARTFVE+GMADGRLCIV+KEAYAPYERPALTK YLFP +KKPARLPGFHT
Sbjct: 59  IGGGNAAGYAARTFVENGMADGRLCIVTKEAYAPYERPALTKAYLFPPEKKPARLPGFHT 118

Query: 117 CVGSGGERQTPEWYKEKGIEMIYQDPVTSIDIEKQTLITNSGKLLKYGSLIVATGCTASR 176
           CVG GGERQTP+WYKEKGIEMIY+DPVT  D EKQTL TN+GK LKYGSLI+ATGCTASR
Sbjct: 119 CVGGGGERQTPDWYKEKGIEMIYEDPVTGADFEKQTLTTNTGKQLKYGSLIIATGCTASR 178

Query: 177 FPEKIGGYLPGVHYIRDVADADALISSLEKAKKVVVVGGGYIGMEVAAAAVGWKLDTT-- 234
           FP+KIGG LPGVHYIR+VADAD+LISSL K+KKVV+VGGGYIGMEVAAAAV W LDTT  
Sbjct: 179 FPDKIGGNLPGVHYIREVADADSLISSLGKSKKVVIVGGGYIGMEVAAAAVAWNLDTTIV 238

Query: 235 -----------------RYEQLYQQNGVKFVKGASIKNLEAGSDGRVAAVKLEDGSTIDA 277
                            RYE+LY+QNGVKFVKGASI NLEAGSDGRV AVKL DGSTI+A
Sbjct: 239 FPEDQLLQRLFTPSLAQRYEELYRQNGVKFVKGASINNLEAGSDGRVTAVKLADGSTIEA 298

Query: 278 DTIVIGIGAKPTVSPFERVGLNSSVGGIQVDGQFRTRMPGIFAIGDVAAFPLKMYDRTAR 337
           DT+VIGIGAKP + PFE + +N S+GGIQVDG FRT  PGIFAIGDVAAFPLK+YDR  R
Sbjct: 299 DTVVIGIGAKPAIGPFETLSMNKSIGGIQVDGLFRTSTPGIFAIGDVAAFPLKIYDRMTR 358

Query: 338 VEHVDHARQSAQHCIKALLSAQTHTYDYLPYFYSRVFEYEGSPRKVWWQFFGDNVGETIE 397
           VEHVDHAR+SAQHC+K+LL+A T TYDYLPYFYSRVFEYEGS RKVWWQF+GDNVGET+E
Sbjct: 359 VEHVDHARRSAQHCVKSLLTAHTDTYDYLPYFYSRVFEYEGSSRKVWWQFYGDNVGETVE 418

Query: 398 IGNFDPKIATFWIDSGKLKGVLVESGSPEEFQLLPTLARSQPFVDKAKLQQASSVEEALE 457
           +GNFDPKIATFWIDSG+LKGVLVESGSPEEFQLLP LARSQP VDKAKL  ASSVEEA+E
Sbjct: 419 VGNFDPKIATFWIDSGRLKGVLVESGSPEEFQLLPKLARSQPIVDKAKLASASSVEEAIE 478

Query: 458 IARAAL 463
           IA+AAL
Sbjct: 479 IAQAAL 484

Source: Brassica oleracea

Species: Brassica oleracea

Genus: Brassica

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|30696924|ref|NP_849839.1| Monodehydroascorbate reductase [Arabidopsis thaliana] gi|50400853|sp|P92947.3|MDARP_ARATH RecName: Full=Monodehydroascorbate reductase, chloroplastic; Short=MDAR; Flags: Precursor gi|12325013|gb|AAG52455.1|AC010852_12 putative monodehydroascorbate reductase; 10617-7178 [Arabidopsis thaliana] gi|23397057|gb|AAN31814.1| putative monodehydroascorbate reductase [Arabidopsis thaliana] gi|332196050|gb|AEE34171.1| Monodehydroascorbate reductase [Arabidopsis thaliana]

 Score =  743 bits (1919), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 374/486 (76%), Positives = 411/486 (84%), Gaps = 25/486 (5%)

Query: 1   MASVSNSLSFKHGLSLWCPQSPSLHR---IRHSS-AKNFQRRGFVVAYSSFANENREFVI 56
           MA  S +L  K GLSLWCP SPSL R    R S        R  V A  SFANENREFVI
Sbjct: 8   MALASTTLPTKSGLSLWCPSSPSLARRFPARFSPIGSRIASRSLVTA--SFANENREFVI 65

Query: 57  VGGGNAAGYAARTFVEHGMADGRLCIVSKEAYAPYERPALTKGYLFPLDKKPARLPGFHT 116
           VGGGNAAGYAARTFVE+GMADGRLCIV+KEAYAPYERPALTK YLFP +KKPARLPGFHT
Sbjct: 66  VGGGNAAGYAARTFVENGMADGRLCIVTKEAYAPYERPALTKAYLFPPEKKPARLPGFHT 125

Query: 117 CVGSGGERQTPEWYKEKGIEMIYQDPVTSIDIEKQTLITNSGKLLKYGSLIVATGCTASR 176
           CVG GGERQTP+WYKEKGIE+IY+DPV   D EKQTL T++GK LKYGSLI+ATGCTASR
Sbjct: 126 CVGGGGERQTPDWYKEKGIEVIYEDPVAGADFEKQTLTTDAGKQLKYGSLIIATGCTASR 185

Query: 177 FPEKIGGYLPGVHYIRDVADADALISSLEKAKKVVVVGGGYIGMEVAAAAVGWKLDTT-- 234
           FP+KIGG+LPGVHYIR+VADAD+LI+SL KAKK+V+VGGGYIGMEVAAAAV W LDTT  
Sbjct: 186 FPDKIGGHLPGVHYIREVADADSLIASLGKAKKIVIVGGGYIGMEVAAAAVAWNLDTTIV 245

Query: 235 -----------------RYEQLYQQNGVKFVKGASIKNLEAGSDGRVAAVKLEDGSTIDA 277
                            +YE+LY+QNGVKFVKGASI NLEAGSDGRV+AVKL DGSTI+A
Sbjct: 246 FPEDQLLQRLFTPSLAQKYEELYRQNGVKFVKGASINNLEAGSDGRVSAVKLADGSTIEA 305

Query: 278 DTIVIGIGAKPTVSPFERVGLNSSVGGIQVDGQFRTRMPGIFAIGDVAAFPLKMYDRTAR 337
           DT+VIGIGAKP + PFE + +N S+GGIQVDG FRT  PGIFAIGDVAAFPLK+YDR  R
Sbjct: 306 DTVVIGIGAKPAIGPFETLAMNKSIGGIQVDGLFRTSTPGIFAIGDVAAFPLKIYDRMTR 365

Query: 338 VEHVDHARQSAQHCIKALLSAQTHTYDYLPYFYSRVFEYEGSPRKVWWQFFGDNVGETIE 397
           VEHVDHAR+SAQHC+K+LL+A T TYDYLPYFYSRVFEYEGSPRKVWWQFFGDNVGET+E
Sbjct: 366 VEHVDHARRSAQHCVKSLLTAHTDTYDYLPYFYSRVFEYEGSPRKVWWQFFGDNVGETVE 425

Query: 398 IGNFDPKIATFWIDSGKLKGVLVESGSPEEFQLLPTLARSQPFVDKAKLQQASSVEEALE 457
           +GNFDPKIATFWI+SG+LKGVLVESGSPEEFQLLP LARSQP VDKAKL  ASSVEEALE
Sbjct: 426 VGNFDPKIATFWIESGRLKGVLVESGSPEEFQLLPKLARSQPLVDKAKLASASSVEEALE 485

Query: 458 IARAAL 463
           IA+AAL
Sbjct: 486 IAQAAL 491

Source: Arabidopsis thaliana

Species: Arabidopsis thaliana

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	469
TAIR|locus:2195503	493	MDAR6 "monodehydroascorbate re	0.488	0.464	0.834	2.3e-196
TAIR|locus:2144588	435	ATMDAR2 [Arabidopsis thaliana	0.458	0.494	0.413	5e-85
TAIR|locus:2086430	488	MDAR4 "monodehydroascorbate re	0.381	0.366	0.459	1.2e-81
TAIR|locus:2085176	466	MDAR1 "monodehydroascorbate re	0.417	0.420	0.413	2.8e-80
TAIR|locus:2100143	441	MDHAR "monodehydroascorbate re	0.452	0.480	0.433	5.2e-79
UNIPROTKB|P95146	411	Rv1869c "Probable reductase" [	0.371	0.423	0.340	2e-30
TIGR_CMR|SPO_3737	403	SPO_3737 "pyridine nucleotide-	0.773	0.900	0.284	1.3e-29
UNIPROTKB|P95034	406	Rv0688 "PUTATIVE FERREDOXIN RE	0.639	0.738	0.305	5.1e-27
WB|WBGene00017640	549	F20D6.11 [Caenorhabditis elega	0.735	0.628	0.271	1.3e-22
UNIPROTKB|Q19655	549	F20D6.11 "Protein F20D6.11" [C	0.735	0.628	0.271	1.3e-22

TAIR|locus:2195503 MDAR6 "monodehydroascorbate reductase 6" [Arabidopsis thaliana (taxid:3702)]

 Score = 1024 (365.5 bits), Expect = 2.3e-196, Sum P(2) = 2.3e-196
 Identities = 191/229 (83%), Positives = 211/229 (92%)

Query:   235 RYEQLYQQNGVKFVKGASIKNLEAGSDGRVAAVKLEDGSTIDADTIVIGIGAKPTVSPFE 294
             +YE+LY+QNGVKFVKGASI NLEAGSDGRV+AVKL DGSTI+ADT+VIGIGAKP + PFE
Sbjct:   263 KYEELYRQNGVKFVKGASINNLEAGSDGRVSAVKLADGSTIEADTVVIGIGAKPAIGPFE 322

Query:   295 RVGLNSSVGGIQVDGQFRTRMPGIFAIGDVAAFPLKMYDRTARVEHVDHARQSAQHCIKA 354
              + +N S+GGIQVDG FRT  PGIFAIGDVAAFPLK+YDR  RVEHVDHAR+SAQHC+K+
Sbjct:   323 TLAMNKSIGGIQVDGLFRTSTPGIFAIGDVAAFPLKIYDRMTRVEHVDHARRSAQHCVKS 382

Query:   355 LLSAQTHTYDYLPYFYSRVFEYEGSPRKVWWQFFGDNVGETIEIGNFDPKIATFWIDSGK 414
             LL+A T TYDYLPYFYSRVFEYEGSPRKVWWQFFGDNVGET+E+GNFDPKIATFWI+SG+
Sbjct:   383 LLTAHTDTYDYLPYFYSRVFEYEGSPRKVWWQFFGDNVGETVEVGNFDPKIATFWIESGR 442

Query:   415 LKGVLVESGSPEEFQLLPTLARSQPFVDKAKLQQASSVEEALEIARAAL 463
             LKGVLVESGSPEEFQLLP LARSQP VDKAKL  ASSVEEALEIA+AAL
Sbjct:   443 LKGVLVESGSPEEFQLLPKLARSQPLVDKAKLASASSVEEALEIAQAAL 491

GO:0009055 "electron carrier activity" evidence=IEA

GO:0009507 "chloroplast" evidence=ISM;IDA

GO:0016491 "oxidoreductase activity" evidence=IEA

GO:0050660 "flavin adenine dinucleotide binding" evidence=IEA

GO:0055114 "oxidation-reduction process" evidence=IEA

GO:0005739 "mitochondrion" evidence=IDA

GO:0009570 "chloroplast stroma" evidence=IDA

GO:0046686 "response to cadmium ion" evidence=IEP

GO:0009409 "response to cold" evidence=IEP

GO:0010319 "stromule" evidence=IDA

GO:0005524 "ATP binding" evidence=IDA

GO:0005829 "cytosol" evidence=RCA

GO:0042744 "hydrogen peroxide catabolic process" evidence=RCA

TAIR|locus:2144588 ATMDAR2 [Arabidopsis thaliana (taxid:3702)]

 Score = 486 (176.1 bits), Expect = 5.0e-85, Sum P(2) = 5.0e-85
 Identities = 96/232 (41%), Positives = 139/232 (59%)

Query:   236 YEQLYQQNGVKFVKGASIKNLEAGSDGRVAAVKLEDGSTIDADTIVIGIGAKPTVSPFER 295
             YE  Y   G+  VKG         S+G V  VKL+DG T++AD +++G+G +P +S F+ 
Sbjct:   212 YEGYYANKGINIVKGTVASGFTTNSNGEVTEVKLKDGRTLEADIVIVGVGGRPIISLFKD 271

Query:   296 VGLNSSVGGIQVDGQFRTRMPGIFAIGDVAAFPLKMYDRTARVEHVDHARQSAQHCIKAL 355
               +    GG++ DG F+T +P ++AIGDVA FP+K+Y+   RVEHVDHAR+SA+  +KA+
Sbjct:   272 Q-VEEEKGGLKTDGFFKTSLPDVYAIGDVATFPMKLYNEMRRVEHVDHARKSAEQAVKAI 330

Query:   356 LSAQTHT----YDYLPYFYSRVFEYEGSPRKVWWQFFGDNVGETIEIGNFDP-----KIA 406
              +A+       YDYLPYFYSR F+         WQF+GDNVGE++  G+ DP     K  
Sbjct:   331 KAAEEGNSIPEYDYLPYFYSRAFDLS-------WQFYGDNVGESVLFGDNDPESPKPKFG 383

Query:   407 TFWIDSGKLKGVLVESGSPEEFQLLPTLARSQPFVDKAKLQQASSVEEALEI 458
             ++WI   K+ G  +E GSPEE   +  LAR+QP V+  ++     +  A  I
Sbjct:   384 SYWIKERKVVGAFLEGGSPEENNAIAKLARAQPSVESLEVLSKEGLSFATNI 435

GO:0005737 "cytoplasm" evidence=ISM

GO:0009055 "electron carrier activity" evidence=IEA

GO:0016491 "oxidoreductase activity" evidence=IEA

GO:0050660 "flavin adenine dinucleotide binding" evidence=IEA

GO:0055114 "oxidation-reduction process" evidence=IEA

GO:0005829 "cytosol" evidence=IDA

GO:0016656 "monodehydroascorbate reductase (NADH) activity" evidence=ISS

GO:0046686 "response to cadmium ion" evidence=IEP;RCA

GO:0009651 "response to salt stress" evidence=IEP

GO:0010043 "response to zinc ion" evidence=IEP

GO:0009570 "chloroplast stroma" evidence=IDA

GO:0006598 "polyamine catabolic process" evidence=RCA

GO:0006970 "response to osmotic stress" evidence=RCA

GO:0009611 "response to wounding" evidence=RCA

GO:0009698 "phenylpropanoid metabolic process" evidence=RCA

GO:0009723 "response to ethylene stimulus" evidence=RCA

GO:0009805 "coumarin biosynthetic process" evidence=RCA

GO:0042398 "cellular modified amino acid biosynthetic process" evidence=RCA

GO:0042744 "hydrogen peroxide catabolic process" evidence=RCA

TAIR|locus:2086430 MDAR4 "monodehydroascorbate reductase 4" [Arabidopsis thaliana (taxid:3702)]

 Score = 420 (152.9 bits), Expect = 1.2e-81, Sum P(2) = 1.2e-81
 Identities = 85/185 (45%), Positives = 122/185 (65%)

Query:    54 FVIVGGGNAAGYAARTFVEHGMADGRLCIVSKEAYAPYERPALTKGYLFPLDKKPARLPG 113
             +VI+GGG AAGYAA  F   G++DG LCI+S+E  APYERPAL+KG+L P  + PARLP 
Sbjct:     7 YVILGGGVAAGYAALEFTRRGVSDGELCIISEEPVAPYERPALSKGFLLP--EAPARLPS 64

Query:   114 FHTCVGSGGERQTPEWYKEKGIEMIYQDPVTSIDIEKQTLITNSGKLLKYGSLIVATGCT 173
             FHTCVG+  E+ TP+WYK+ GIE++    V S+D+ ++TL++++G+ + Y  LI+ATG  
Sbjct:    65 FHTCVGANDEKLTPKWYKDHGIELVLGTRVKSVDVRRKTLLSSTGETISYKFLIIATGAR 124

Query:   174 ASRFPE--KIGGYLPGVHYIRDVADADALISSLEKAKKXXXXXXX--YIGMEVAAAAVGW 229
             A +  E    G     V Y+RD+ADA+ L + ++ +           YIGME AA+ V  
Sbjct:   125 ALKLEEFGVEGSDAENVCYLRDLADANRLATVIQSSSNGNAVVIGGGYIGMECAASLVIN 184

Query:   230 KLDTT 234
             K++ T
Sbjct:   185 KINVT 189

GO:0005737 "cytoplasm" evidence=ISM

GO:0009055 "electron carrier activity" evidence=IEA

GO:0016491 "oxidoreductase activity" evidence=IEA

GO:0050660 "flavin adenine dinucleotide binding" evidence=IEA

GO:0055114 "oxidation-reduction process" evidence=IEA

GO:0009941 "chloroplast envelope" evidence=IDA

GO:0005778 "peroxisomal membrane" evidence=IDA

GO:0016656 "monodehydroascorbate reductase (NADH) activity" evidence=IMP;IDA

GO:0042744 "hydrogen peroxide catabolic process" evidence=RCA;IMP;TAS

GO:0019761 "glucosinolate biosynthetic process" evidence=RCA

GO:0046686 "response to cadmium ion" evidence=RCA

TAIR|locus:2085176 MDAR1 "monodehydroascorbate reductase 1" [Arabidopsis thaliana (taxid:3702)]

 Score = 449 (163.1 bits), Expect = 2.8e-80, Sum P(2) = 2.8e-80
 Identities = 88/213 (41%), Positives = 130/213 (61%)

Query:   236 YEQLYQQNGVKFVKGASIKNLEAGSDGRVAAVKLEDGSTIDADTIVIGIGAKPTVSPFER 295
             YE  Y   GVK +KG       A  +G V  V+L+DG T++AD +++G+GAKP  S F+ 
Sbjct:   243 YETYYTNKGVKIIKGTVASGFTAQPNGEVKEVQLKDGRTLEADIVIVGVGAKPLTSLFKG 302

Query:   296 VGLNSSVGGIQVDGQFRTRMPGIFAIGDVAAFPLKMYDRTARVEHVDHARQSAQHCIKAL 355
               +    GGI+ D  F+T +P ++A+GDVA FPLKMY    RVEHVDH+R+SA+  +KA+
Sbjct:   303 Q-VEEDKGGIKTDAFFKTSVPDVYAVGDVATFPLKMYGDVRRVEHVDHSRKSAEQAVKAI 361

Query:   356 LSAQ----THTYDYLPYFYSRVFEYEGSPRKVWWQFFGDNVGETIEIG-----NFDPKIA 406
              +A+       YDYLP+FYSR F+         WQF+GDNVG+++  G     N  P+  
Sbjct:   362 KAAEGGAAVEEYDYLPFFYSRSFDLS-------WQFYGDNVGDSVLFGDSNPSNPKPRFG 414

Query:   407 TFWIDSGKLKGVLVESGSPEEFQLLPTLARSQP 439
              +W+  GK+ G  +E GS +E + L  +A+++P
Sbjct:   415 AYWVQGGKVVGAFMEGGSGDENKALAKVAKARP 447

GO:0005737 "cytoplasm" evidence=ISM

GO:0009055 "electron carrier activity" evidence=IEA

GO:0016491 "oxidoreductase activity" evidence=IEA

GO:0050660 "flavin adenine dinucleotide binding" evidence=IEA

GO:0055114 "oxidation-reduction process" evidence=IEA

GO:0005782 "peroxisomal matrix" evidence=IDA

GO:0016656 "monodehydroascorbate reductase (NADH) activity" evidence=IDA

GO:0042744 "hydrogen peroxide catabolic process" evidence=RCA;TAS

GO:0046686 "response to cadmium ion" evidence=IEP;RCA

GO:0005886 "plasma membrane" evidence=IDA

GO:0005777 "peroxisome" evidence=IDA

GO:0009507 "chloroplast" evidence=IDA

GO:0048046 "apoplast" evidence=IDA

GO:0005829 "cytosol" evidence=RCA

GO:0006094 "gluconeogenesis" evidence=RCA

GO:0006096 "glycolysis" evidence=RCA

GO:0009651 "response to salt stress" evidence=RCA

TAIR|locus:2100143 MDHAR "monodehydroascorbate reductase" [Arabidopsis thaliana (taxid:3702)]

 Score = 479 (173.7 bits), Expect = 5.2e-79, Sum P(2) = 5.2e-79
 Identities = 101/233 (43%), Positives = 140/233 (60%)

Query:   236 YEQLYQQNGVKFVKGASIKNLEAGSDGRVAAVKLEDGSTIDADTIVIGIGAKPTVSPFER 295
             YE  Y   G+K +KG         SDG V  VKLEDG T++A+ +V G+GA+P  S F+ 
Sbjct:   213 YESYYANKGIKIIKGTVATGFSTNSDGEVTEVKLEDGRTLEANIVVAGVGARPATSLFKG 272

Query:   296 VGLNSSVGGIQVDGQFRTRMPGIFAIGDVAAFPLKMYDRTARVEHVDHARQSAQHCIKAL 355
               L    GGI+ DG F+T +P ++A+GDVA FP+KMY  T RVEH D+AR+SA   +KA+
Sbjct:   273 Q-LEEEKGGIKTDGFFKTSVPDVYALGDVATFPMKMYGGTRRVEHADNARKSAAQAVKAI 331

Query:   356 LSAQTHT----YDYLPYFYSRVFEYEGSPRKVWWQFFGDNVGETIEIGNFDPK-----IA 406
              + +       YDYLPYFYSR F       K+ W+F+G+NVGE++  G+ DPK       
Sbjct:   332 KAGEEGKTIPDYDYLPYFYSRFF-------KLSWEFYGENVGESVLFGDNDPKSPKPKFG 384

Query:   407 TFWIDSGKLKGVLVESGSPEEFQLLPTLARSQPFVDKAKLQQASSVEEALEIA 459
             T+W+  GK+ GV +E G+ EE + +  +AR+QP V+   L   S  EE L  A
Sbjct:   385 TYWVKDGKVVGVFLEGGTQEEHKAIAKVARAQPSVES--LDVLS--EEGLSFA 433

GO:0005737 "cytoplasm" evidence=ISM

GO:0009055 "electron carrier activity" evidence=IEA

GO:0016491 "oxidoreductase activity" evidence=IEA

GO:0050660 "flavin adenine dinucleotide binding" evidence=IEA

GO:0055114 "oxidation-reduction process" evidence=IEA

GO:0005829 "cytosol" evidence=IDA

GO:0016656 "monodehydroascorbate reductase (NADH) activity" evidence=ISS

GO:0009753 "response to jasmonic acid stimulus" evidence=IEP;RCA

GO:0009651 "response to salt stress" evidence=IEP

GO:0009414 "response to water deprivation" evidence=IEP;RCA

GO:0009610 "response to symbiotic fungus" evidence=IEP

GO:0043903 "regulation of symbiosis, encompassing mutualism through parasitism" evidence=IMP

GO:0007165 "signal transduction" evidence=RCA

GO:0009611 "response to wounding" evidence=RCA

GO:0009695 "jasmonic acid biosynthetic process" evidence=RCA

GO:0009723 "response to ethylene stimulus" evidence=RCA

GO:0009733 "response to auxin stimulus" evidence=RCA

GO:0009738 "abscisic acid mediated signaling pathway" evidence=RCA

GO:0009867 "jasmonic acid mediated signaling pathway" evidence=RCA

GO:0042538 "hyperosmotic salinity response" evidence=RCA

GO:0042744 "hydrogen peroxide catabolic process" evidence=RCA

UNIPROTKB|P95146 Rv1869c "Probable reductase" [Mycobacterium tuberculosis H37Rv (taxid:83332)]

 Score = 206 (77.6 bits), Expect = 2.0e-30, Sum P(2) = 2.0e-30
 Identities = 64/188 (34%), Positives = 91/188 (48%)

Query:    54 FVIVGGGNAAGYAARTFVEHGMADGRLCIVSKEAYAPYERPALTKGYLFPLDKKPARLPG 113
             FVIVGGG  AG  A   +      GR+ +   E + PY+RP L+K +L    KK   L  
Sbjct:     7 FVIVGGG-LAGAKAVEALRRSDFGGRIILFGDEEHLPYDRPPLSKEFL--AGKKS--LSD 61

Query:   114 FHTCVGSGGERQTPEWYKEKGIEMIYQDPVTSIDIEKQTLITNSGKLLKYGSLIVATGCT 173
             F          QT +WY++  +++     V+S+D    T+    G  ++Y  L++ATG +
Sbjct:    62 FTI--------QTSDWYRDHDVDVRLGVRVSSLDRSAHTVELPDGAAVRYDKLLLATG-S 112

Query:   174 ASRFPEKIGGYLPGVHYIRDVADADALISSLEKAKKXXXXXXXYIGMEVAAAAVGWKLDT 233
             A R P   G    GVHY+R   DA AL S L +          +IG+EVAA+A    +D 
Sbjct:   113 APRRPPIPGSDAAGVHYLRSYNDAVALNSVLVQGSSLAVVGAGWIGLEVAASARQRGVDV 172

Query:   234 TRYEQLYQ 241
             T  E   Q
Sbjct:   173 TVVETAIQ 180

GO:0005576 "extracellular region" evidence=IDA

GO:0005886 "plasma membrane" evidence=IDA

TIGR_CMR|SPO_3737 SPO_3737 "pyridine nucleotide-disulphide oxidoreductase family protein" [Ruegeria pomeroyi DSS-3 (taxid:246200)]

 Score = 328 (120.5 bits), Expect = 1.3e-29, P = 1.3e-29
 Identities = 117/411 (28%), Positives = 182/411 (44%)

Query:    55 VIVGGGNAAGYAARTFVEHGMADGRLCIVSKEAYAPYERPALTKGYLFPLDKKPARLPGF 114
             V++G G A         + G  +G + ++  E   PY+RP L+K YL   + +  RL  F
Sbjct:     5 VVIGAGQAGASLVARLRKDGF-EGEITLIGAEPVPPYQRPPLSKAYLLG-EMEKERL--F 60

Query:   115 HTCVGSGGERQTPE-WYKEKGIEMIYQDPVTSIDIEKQTLITNSGKLLKYGSLIVATGCT 173
                         PE +Y E+ I +     V++ID   +T ++  G+++ Y  L + TG  
Sbjct:    61 ----------LRPESFYAEQNIALRLNARVSAIDPAAKT-VSLGGEVIPYDQLALTTGSE 109

Query:   174 ASRFPEKIGGYLPGVHYIRDVADADALISSLEKAKKXXXXXXXYIGMEVAAAAV--GWKL 231
               R P  IGG L GVH +RD+AD DA+  S+ +  +       YIG+E AA     G ++
Sbjct:   110 PRRLPAAIGGDLAGVHVVRDLADIDAMAPSVTEGARALIVGGGYIGLEAAAVCAKRGVQV 169

Query:   232 ----------------DTTRY-EQLYQQNGVKFVKGASIKNLEAGSDGRVAAVKLEDGST 274
                             +T+ Y   L+  +GV   +G  +  L  G+ GRV    L DGS 
Sbjct:   170 TLVEMADRILQRVAAPETSAYFRALHTGHGVDIREGVGLTRL-IGAQGRVTGAVLTDGSE 228

Query:   275 IDADTIVIGIGAKPTVSPFERVGLNSSVGGIQVDGQFRTRMPGIFAIGDVAAFPLKMYDR 334
             +  D +V+G+G  P  +  E  GL     GI+ D Q RT  P I+A GD A+FP K    
Sbjct:   229 LPVDLVVVGVGIAPATALAEAAGLVLE-NGIRTDAQGRTSDPSIWAAGDCASFPYK--GG 285

Query:   335 TARVEHVDHARQSAQHCIKALLSAQTHTYDYLPYFYSRVFEYEGSPRKVWWQFFGDNVG- 393
               R+E V +A   A+   + +  A    Y   P+F+S   +Y+     V  Q  G N G 
Sbjct:   286 RIRLESVPNAIDQAETVAQNMQGAGKD-YVAQPWFWSD--QYD-----VKLQIAGLNTGY 337

Query:   394 ETIEIGNFDPKIATFWIDSGKLKGVLVESGSPEEFQLLPTLARSQPFVDKA 444
             + +     + +  +FW  +G     +     P  + +   L  S    D A
Sbjct:   338 DRVVTRPGEGQTVSFWYYTGDQLVAVDAMNDPRAYMVGKRLIDSGKTADPA 388

GO:0008152 "metabolic process" evidence=ISS

GO:0015036 "disulfide oxidoreductase activity" evidence=ISS

UNIPROTKB|P95034 Rv0688 "PUTATIVE FERREDOXIN REDUCTASE" [Mycobacterium tuberculosis (taxid:1773)]

 Score = 305 (112.4 bits), Expect = 5.1e-27, P = 5.1e-27
 Identities = 104/340 (30%), Positives = 149/340 (43%)

Query:    55 VIVGGGNAAGYAARTFVEHGMADGRLCIVSKEAYAPYERPALTKGYLFPLDKKPARLPGF 114
             VIVGGG AA   A      G + GRL IVS E + PY+RP L+K  L       A  P  
Sbjct:    19 VIVGGGLAAARTAEQLRRAGYS-GRLTIVSDEVHLPYDRPPLSKEVLRSEVDDVALKPR- 76

Query:   115 HTCVGSGGERQTPEWYKEKGIEMIYQDPVTSIDIEKQTLITNSGKLLKYGSLIVATGCTA 174
                          E+Y EK I +       S+D  +QT+    G +L Y  L++ATG   
Sbjct:    77 -------------EFYDEKDIALRLGSAAVSLDTGEQTVTLADGTVLGYDELVIATGLVP 123

Query:   175 SRFPEKIGGYLPGVHYIRDVADADALISSLEKAKKXXXXXXXYIGMEVAAAAVGWKLDTT 234
              R P      L G+  +R   ++ AL      A+        +IG EVAA+  G  +D  
Sbjct:   124 RRIPSLPD--LDGIRVLRSFDESMALRKHASAARHAVVVGAGFIGCEVAASLRGLGVDVV 181

Query:   235 RYE-------------------QLYQQNGVKFVKGASIKNLEAGSDGRVAAVKLEDGSTI 275
               E                   +L++  GV    G ++   E    G V AV L DG+ +
Sbjct:   182 LVEPQPAPLASVLGEQIGQLVTRLHRDEGVDVRTGVTVA--EVRGKGHVDAVVLTDGTEL 239

Query:   276 DADTIVIGIGAKPTVSPFERVGLNSSVGGIQVDGQFRTRMPGIFAIGDVAAFPLKMYDRT 335
              AD +V+GIG+ P     E  G+     G+  D   RT  P ++A+GDVA++   M    
Sbjct:   240 PADLVVVGIGSTPATEWLEGSGVEVD-NGVICDKAGRTSAPNVWALGDVASWRDPM-GHQ 297

Query:   336 ARVEHVDHARQSAQHCIKALLSAQTHTYDYLPYFYSRVFE 375
             ARVEH  +    A+  + A+L     T   +PYF+S  ++
Sbjct:   298 ARVEHWSNVADQARVVVPAMLGTDVPTGVVVPYFWSDQYD 337

GO:0005515 "protein binding" evidence=IPI

GO:0006124 "ferredoxin metabolic process" evidence=IDA

GO:0008860 "ferredoxin-NAD+ reductase activity" evidence=IDA

GO:0009055 "electron carrier activity" evidence=IDA

GO:0045454 "cell redox homeostasis" evidence=IDA

GO:0050660 "flavin adenine dinucleotide binding" evidence=IDA

GO:0051287 "NAD binding" evidence=IDA

WB|WBGene00017640 F20D6.11 [Caenorhabditis elegans (taxid:6239)]

 Score = 286 (105.7 bits), Expect = 1.3e-22, P = 1.3e-22
 Identities = 109/402 (27%), Positives = 179/402 (44%)

Query:    51 NREFVIVGGGNAAGYAARTFVEHGMADGRLC---IVSKEAYAPYERPALTKGYLFPLDKK 107
             +R  VI+GGG     A  TF+EH   +G +    ++S+E+  PY+R  L+K        K
Sbjct:   143 DRPVVIIGGG----VATATFIEHSRLNGLITPILVISEESLPPYDRVLLSK--------K 190

Query:   108 PARLPGFHTCVGSGGERQTPEWYKEKGIEMIYQDPVTSIDIEKQTLITNSGKLLKYGSLI 167
             PA   G    +     R+   +Y+E+ ++ + +  V +++ + + +  ++G+ + Y  LI
Sbjct:   191 PAAT-GEDIRL-----RKDDAFYEERNVKFLLKTSVIAVNHKSREVSLSNGETVVYSKLI 244

Query:   168 VATG----------------CTASRFPEK--IGGYLPGVHYI---RDVADADALISSLEK 206
             +ATG                C   +  E   I    PG H +         +   +  EK
Sbjct:   245 IATGGNVRKLQVPGSDLKNICYLRKVEEANIISNLHPGKHVVCVGSSFIGMEVASALAEK 304

Query:   207 AKKXXXXXXXYIGMEVAAAAVGWKLDTTRYEQLYQQNGVKFVKGASIKNLEAGSDGRVAA 266
             A            + V  + +G  +   R +  +++ GVKF   A++  L     G V+ 
Sbjct:   305 AASVTVISNTPEPLPVFGSDIGKGI---RLK--FEEKGVKFELAANVVALRGNDQGEVSK 359

Query:   267 VKLEDGSTIDADTIVIGIGAKPTVSPFERVGLN-SSVGGIQVDGQFRTRMPGIFAIGDVA 325
             V LE+G  +D D +V GIG  P     E  G+   + G I+VD +FRT +  IFA+GDV 
Sbjct:   360 VILENGKELDVDLLVCGIGVTPATKFLEGSGIKLDNRGFIEVDEKFRTNISYIFAMGDVV 419

Query:   326 AFPLKMYD-RTARVEHVDHARQSAQHCIKALLSAQTHTYDYLPYFYSRVFEYEGSPRKVW 384
               PL ++D  +  ++H   A+   QH +   +  +      +PYF++  F   G      
Sbjct:   420 TAPLPLWDIDSINIQHFQTAQAHGQH-LGYTIVGKPQPGPIVPYFWTLFFFAFGL----- 473

Query:   385 WQFFGDNVGETIEIGNFDPKIATFW-IDSGKLKGVLVESGSP 425
              +F G N G T E  N DP+  TF      K K V V +G P
Sbjct:   474 -KFSGCNQGSTKEYTNGDPETGTFIRYFLKKDKVVAVAAGGP 514

GO:0016491 "oxidoreductase activity" evidence=IEA

GO:0055114 "oxidation-reduction process" evidence=IEA

GO:0050660 "flavin adenine dinucleotide binding" evidence=IEA

GO:0051537 "2 iron, 2 sulfur cluster binding" evidence=IEA

UNIPROTKB|Q19655 F20D6.11 "Protein F20D6.11" [Caenorhabditis elegans (taxid:6239)]

 Score = 286 (105.7 bits), Expect = 1.3e-22, P = 1.3e-22
 Identities = 109/402 (27%), Positives = 179/402 (44%)

Query:    51 NREFVIVGGGNAAGYAARTFVEHGMADGRLC---IVSKEAYAPYERPALTKGYLFPLDKK 107
             +R  VI+GGG     A  TF+EH   +G +    ++S+E+  PY+R  L+K        K
Sbjct:   143 DRPVVIIGGG----VATATFIEHSRLNGLITPILVISEESLPPYDRVLLSK--------K 190

Query:   108 PARLPGFHTCVGSGGERQTPEWYKEKGIEMIYQDPVTSIDIEKQTLITNSGKLLKYGSLI 167
             PA   G    +     R+   +Y+E+ ++ + +  V +++ + + +  ++G+ + Y  LI
Sbjct:   191 PAAT-GEDIRL-----RKDDAFYEERNVKFLLKTSVIAVNHKSREVSLSNGETVVYSKLI 244

Query:   168 VATG----------------CTASRFPEK--IGGYLPGVHYI---RDVADADALISSLEK 206
             +ATG                C   +  E   I    PG H +         +   +  EK
Sbjct:   245 IATGGNVRKLQVPGSDLKNICYLRKVEEANIISNLHPGKHVVCVGSSFIGMEVASALAEK 304

Query:   207 AKKXXXXXXXYIGMEVAAAAVGWKLDTTRYEQLYQQNGVKFVKGASIKNLEAGSDGRVAA 266
             A            + V  + +G  +   R +  +++ GVKF   A++  L     G V+ 
Sbjct:   305 AASVTVISNTPEPLPVFGSDIGKGI---RLK--FEEKGVKFELAANVVALRGNDQGEVSK 359

Query:   267 VKLEDGSTIDADTIVIGIGAKPTVSPFERVGLN-SSVGGIQVDGQFRTRMPGIFAIGDVA 325
             V LE+G  +D D +V GIG  P     E  G+   + G I+VD +FRT +  IFA+GDV 
Sbjct:   360 VILENGKELDVDLLVCGIGVTPATKFLEGSGIKLDNRGFIEVDEKFRTNISYIFAMGDVV 419

Query:   326 AFPLKMYD-RTARVEHVDHARQSAQHCIKALLSAQTHTYDYLPYFYSRVFEYEGSPRKVW 384
               PL ++D  +  ++H   A+   QH +   +  +      +PYF++  F   G      
Sbjct:   420 TAPLPLWDIDSINIQHFQTAQAHGQH-LGYTIVGKPQPGPIVPYFWTLFFFAFGL----- 473

Query:   385 WQFFGDNVGETIEIGNFDPKIATFW-IDSGKLKGVLVESGSP 425
              +F G N G T E  N DP+  TF      K K V V +G P
Sbjct:   474 -KFSGCNQGSTKEYTNGDPETGTFIRYFLKKDKVVAVAAGGP 514

GO:0005739 "mitochondrion" evidence=ISS

GO:0051882 "mitochondrial depolarization" evidence=ISS

GO:0008656 "cysteine-type endopeptidase activator activity involved in apoptotic process" evidence=ISS

GO:0008635 "activation of cysteine-type endopeptidase activity involved in apoptotic process by cytochrome c" evidence=ISS

GO:0006917 "induction of apoptosis" evidence=ISS

GO:0005783 "endoplasmic reticulum" evidence=ISS

GO:0005743 "mitochondrial inner membrane" evidence=ISS

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

ID	Name	Annotated EC number	Identity	Query coverage	Hit coverage	RBH(Q2H)	RBH(H2Q)
P92947	MDARP_ARATH	1, ., 6, ., 5, ., 4	0.7695	0.9829	0.9350	yes	no

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

Prediction Level	EC number	Confidence of Prediction
4th Layer	1.6.5.4	0.979
3rd Layer	1.6.5	0.983

---

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Your Input: GSVIVG00002544001 SubName- Full=Chromosome chr2 scaffold_132, whole genome shotgun sequence; (490 aa) (Vitis vinifera)

Predicted Functional Partners:

Sorry, there are no predicted associations at the current settings.

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Length	Definition	E-value
Query	469
pfam07992	283	pfam07992, Pyr_redox_2, Pyridine nucleotide-disulp	4e-55
PRK09754	396	PRK09754, PRK09754, phenylpropionate dioxygenase f	2e-37
COG0446	415	COG0446, HcaD, Uncharacterized NAD(FAD)-dependent	6e-37
COG1251	793	COG1251, NirB, NAD(P)H-nitrite reductase [Energy p	7e-32
TIGR02374	785	TIGR02374, nitri_red_nirB, nitrite reductase [NAD(	7e-28
TIGR03385	427	TIGR03385, CoA_CoA_reduc, CoA-disulfide reductase	7e-22
TIGR01350	460	TIGR01350, lipoamide_DH, dihydrolipoamide dehydrog	2e-20
COG1252	405	COG1252, Ndh, NADH dehydrogenase, FAD-containing s	7e-20
COG1249	454	COG1249, Lpd, Pyruvate/2-oxoglutarate dehydrogenas	2e-19
PRK09564	444	PRK09564, PRK09564, coenzyme A disulfide reductase	5e-17
PRK06116	450	PRK06116, PRK06116, glutathione reductase; Validat	7e-16
PRK05976	472	PRK05976, PRK05976, dihydrolipoamide dehydrogenase	1e-15
PRK04965	377	PRK04965, PRK04965, NADH:flavorubredoxin oxidoredu	3e-15
COG0492	305	COG0492, TrxB, Thioredoxin reductase [Posttranslat	6e-15
PRK14989	847	PRK14989, PRK14989, nitrite reductase subunit NirD	3e-14
PRK13512	438	PRK13512, PRK13512, coenzyme A disulfide reductase	4e-13
PRK07818	466	PRK07818, PRK07818, dihydrolipoamide dehydrogenase	1e-12
PRK06416	462	PRK06416, PRK06416, dihydrolipoamide dehydrogenase	2e-12
PRK05249	461	PRK05249, PRK05249, soluble pyridine nucleotide tr	3e-12
TIGR01421	450	TIGR01421, gluta_reduc_1, glutathione-disulfide re	5e-12
PRK11749	457	PRK11749, PRK11749, dihydropyrimidine dehydrogenas	9e-12
PRK06370	463	PRK06370, PRK06370, mercuric reductase; Validated	2e-11
PRK06327	475	PRK06327, PRK06327, dihydrolipoamide dehydrogenase	7e-11
TIGR01292	299	TIGR01292, TRX_reduct, thioredoxin-disulfide reduc	8e-11
TIGR02053	463	TIGR02053, MerA, mercuric reductase	1e-10
PRK06292	460	PRK06292, PRK06292, dihydrolipoamide dehydrogenase	1e-10
TIGR01423	486	TIGR01423, trypano_reduc, trypanothione-disulfide	4e-10
PRK12771	564	PRK12771, PRK12771, putative glutamate synthase (N	7e-10
PRK12770	352	PRK12770, PRK12770, putative glutamate synthase su	9e-10
PRK07251	438	PRK07251, PRK07251, pyridine nucleotide-disulfide	1e-09
PTZ00058	561	PTZ00058, PTZ00058, glutathione reductase; Provisi	1e-09
pfam00070	82	pfam00070, Pyr_redox, Pyridine nucleotide-disulphi	2e-09
TIGR03140	515	TIGR03140, AhpF, alkyl hydroperoxide reductase sub	3e-09
TIGR01424	446	TIGR01424, gluta_reduc_2, glutathione-disulfide re	3e-09
TIGR03169	364	TIGR03169, Nterm_to_SelD, pyridine nucleotide-disu	3e-09
PTZ00052	499	PTZ00052, PTZ00052, thioredoxin reductase; Provisi	4e-08
TIGR01316	449	TIGR01316, gltA, glutamate synthase (NADPH), homot	6e-08
PRK07846	451	PRK07846, PRK07846, mycothione reductase; Reviewed	6e-08
PRK06115	466	PRK06115, PRK06115, dihydrolipoamide dehydrogenase	7e-08
PRK12810	471	PRK12810, gltD, glutamate synthase subunit beta; R	1e-07
TIGR01438	484	TIGR01438, TGR, thioredoxin and glutathione reduct	4e-07
PLN02507	499	PLN02507, PLN02507, glutathione reductase	8e-07
PRK06912	458	PRK06912, acoL, dihydrolipoamide dehydrogenase; Va	2e-06
TIGR03452	452	TIGR03452, mycothione_red, mycothione reductase	2e-06
PLN02546	558	PLN02546, PLN02546, glutathione reductase	5e-06
PRK08010	441	PRK08010, PRK08010, pyridine nucleotide-disulfide	5e-06
PTZ00318	424	PTZ00318, PTZ00318, NADH dehydrogenase-like protei	9e-06
COG3634	520	COG3634, AhpF, Alkyl hydroperoxide reductase, larg	1e-05
PRK07845	466	PRK07845, PRK07845, flavoprotein disulfide reducta	2e-05
PRK09853	1019	PRK09853, PRK09853, putative selenate reductase su	2e-05
PRK12814	652	PRK12814, PRK12814, putative NADPH-dependent gluta	3e-05
PRK12778	752	PRK12778, PRK12778, putative bifunctional 2-polypr	4e-05
PRK06467	471	PRK06467, PRK06467, dihydrolipoamide dehydrogenase	2e-04
COG0493	457	COG0493, GltD, NADPH-dependent glutamate synthase	4e-04
PRK14694	468	PRK14694, PRK14694, putative mercuric reductase; P	4e-04
pfam13738	202	pfam13738, Pyr_redox_3, Pyridine nucleotide-disulp	5e-04
TIGR03315	1012	TIGR03315, Se_ygfK, putative selenate reductase, Y	7e-04
PRK15317	517	PRK15317, PRK15317, alkyl hydroperoxide reductase	7e-04
pfam07992	283	pfam07992, Pyr_redox_2, Pyridine nucleotide-disulp	0.002
PRK12831	464	PRK12831, PRK12831, putative oxidoreductase; Provi	0.003

>gnl|CDD|219686 pfam07992, Pyr_redox_2, Pyridine nucleotide-disulphide oxidoreductase

 Score =  184 bits (470), Expect = 4e-55
 Identities = 90/297 (30%), Positives = 132/297 (44%), Gaps = 38/297 (12%)

Query: 55  VIVGGGNAAGYAARTFVEHGMADGRLCIVSKEAYAPYERPALTKGYLFPLDKKPARLPGF 114
           VI+GGG  AG AA   +       ++ ++ +E    Y R  L K  L  L+         
Sbjct: 3   VIIGGG-PAGLAAAIRL--ARLGLKVALIEREGGTCYNRGCLPKKLL--LEVAEGLELA- 56

Query: 115 HTCVGSGGERQTPEWYKEKGIEMIYQDPVTSIDIEKQTLITNS---GKLLKYGSLIVATG 171
                  G     E YKE G+E++    V  ID  ++T++      G+ + Y  LI+ATG
Sbjct: 57  ------IGLALPEEVYKEFGVEVLLGTEVVDIDRGEKTVVLKDVETGREITYDKLIIATG 110

Query: 172 CTASRFPEKIGGYLPGVHYIRDVADADALISSLEKAKKVVVVGGGYIGMEVAAAAVGWKL 231
                    I G    V  +R V D+D ++  LE  K+VVVVGGGYIG+E+AAA      
Sbjct: 111 ARPRIPG--IPGV--EVATLRGVIDSDEILELLELPKRVVVVGGGYIGLELAAALAKLGK 166

Query: 232 DTTRYE------------------QLYQQNGVKFVKGASIKNLEAGSDGRVAAVKLEDGS 273
           + T  E                  +  ++  +       +  +    DG+V  VKL DG 
Sbjct: 167 EVTVVERRDRLLARADDEISAALLEKLEKLLLGVTVLLVVVVVVKVGDGKVVEVKLGDGE 226

Query: 274 TIDADTIVIGIGAKPTVSPFERVGLN-SSVGGIQVDGQFRTRMPGIFAIGDVAAFPL 329
            +DAD +++ IG +P     E+ G+     G I VD   RT +PGI+A GDVA    
Sbjct: 227 ELDADVVLVAIGRRPNTELLEQAGVELDERGYIVVDEYLRTSVPGIYAAGDVAEGKP 283

This family includes both class I and class II oxidoreductases and also NADH oxidases and peroxidases. This domain is actually a small NADH binding domain within a larger FAD binding domain. Length = 283

>gnl|CDD|170080 PRK09754, PRK09754, phenylpropionate dioxygenase ferredoxin reductase subunit; Provisional

 Score =  140 bits (355), Expect = 2e-37
 Identities = 81/296 (27%), Positives = 128/296 (43%), Gaps = 42/296 (14%)

Query: 51  NREFVIVGGGNAAGYAARTFVEHGMADGRLCIVSKEAYAPYERPALTKGYLFPLDKKPAR 110
            +  +IVGGG AA  AA +  + G   G L + S E + PYERP L+K  L     +  +
Sbjct: 3   EKTIIIVGGGQAAAMAAASLRQQGF-TGELHLFSDERHLPYERPPLSKSMLLEDSPQLQQ 61

Query: 111 LPGFHTCVGSGGERQTPEWYKEKGIEMIYQDPVTSIDIEKQTLITNSGKLLKYGSLIVAT 170
           +                 W++E  + +     + ++  + + L+  +G+   +  L +AT
Sbjct: 62  V-------------LPANWWQENNVHLHSGVTIKTLGRDTRELVLTNGESWHWDQLFIAT 108

Query: 171 GCTASRFP--EKIGGYLPGVHYIRDVADADALISSLEKAKKVVVVGGGYIGMEVAAAAVG 228
           G  A   P  + +G        +R   DA  L   L+  + VV+VG G IG+E+AA+A  
Sbjct: 109 GAAARPLPLLDALG---ERCFTLRHAGDAARLREVLQPERSVVIVGAGTIGLELAASATQ 165

Query: 229 WKLDTTRYEQL-------------------YQQNGVKFVKGASIKNLEAGSDGRVAAVKL 269
            +   T  E                     +QQ GV+ +   +I   E   DG    + L
Sbjct: 166 RRCKVTVIELAATVMGRNAPPPVQRYLLQRHQQAGVRILLNNAI---EHVVDGEKVELTL 222

Query: 270 EDGSTIDADTIVIGIGAKPTVSPFERVGLNSSVGGIQVDGQFRTRMPGIFAIGDVA 325
           + G T+ AD ++ GIG            L+++  GI +D   RT  P IFA GDVA
Sbjct: 223 QSGETLQADVVIYGIGISANDQLAREANLDTA-NGIVIDEACRTCDPAIFAGGDVA 277

Length = 396

>gnl|CDD|223523 COG0446, HcaD, Uncharacterized NAD(FAD)-dependent dehydrogenases [General function prediction only]

 Score =  140 bits (353), Expect = 6e-37
 Identities = 90/348 (25%), Positives = 137/348 (39%), Gaps = 42/348 (12%)

Query: 54  FVIVGGGNAAGYAARTFVEHGMADGRLCIVSKEAYAPYERPALTKGYLFPLDKKPARLPG 113
            VIVGGG A   AA T     +A     ++ +E    Y R  L+      +      L  
Sbjct: 1   IVIVGGGAAGLSAATTLRRLLLAAEIT-LIGREPKYSYYRCPLSLYVGGGI-ASLEDLRY 58

Query: 114 FHTCVGSGGERQTPEWYKEKGIEMIYQDPVTSIDIEKQTLITNSGKLLKYGSLIVATGCT 173
                        P + +  GI++     VTSID E + ++ + G++ +Y  L++ATG  
Sbjct: 59  P------------PRFNRATGIDVRTGTEVTSIDPENKVVLLDDGEI-EYDYLVLATGAR 105

Query: 174 ASRFPEKIGGYLPGVHYIRDVADADALISSLEKAKKVVVVGGGYIGMEVAAAAVGWKLDT 233
               P        GV  +R   DA+AL    E  K VVVVG G IG+E A AA       
Sbjct: 106 PRPPP---ISDWEGVVTLRLREDAEALKGGAEPPKDVVVVGAGPIGLEAAEAAAKRGKKV 162

Query: 234 TRYE-------------------QLYQQNGVKFVKGASIKNLEAGSDGRVAA-VKLEDGS 273
           T  E                   +L ++ GV+ + G  +  +E   +  V   V   DG 
Sbjct: 163 TLIEAADRLGGQLLDPEVAEELAELLEKYGVELLLGTKVVGVEGKGNTLVVERVVGIDGE 222

Query: 274 TIDADTIVIGIGAKPTV--SPFERVGLNSSVGGIQVDGQFRT-RMPGIFAIGDVAAFPLK 330
            I AD ++IG G +P V  +     GL  + G + VD +  T + P ++A GDVA  P  
Sbjct: 223 EIKADLVIIGPGERPNVVLANDALPGLALAGGAVLVDERGGTSKDPDVYAAGDVAEIPAA 282

Query: 331 MYDRTARVEHVDHARQSAQHCIKALLSAQTHTYDYLPYFYSRVFEYEG 378
              +  R+     A  + +      ++        L    S V +   
Sbjct: 283 ETGKGGRIALWAIAVAAGRI-AAENIAGALRIPGLLGTVISDVGDLCA 329

Length = 415

>gnl|CDD|224171 COG1251, NirB, NAD(P)H-nitrite reductase [Energy production and conversion]

 Score =  128 bits (325), Expect = 7e-32
 Identities = 77/311 (24%), Positives = 124/311 (39%), Gaps = 58/311 (18%)

Query: 52  REFVIVGGGNAAGYAARTFVEHGMADGRLCIVSKEAYAPYERPALTKGYLFPLDKKPARL 111
           ++ VI+G G A        +E       + +  +E    Y R  L+              
Sbjct: 4   QKLVIIGNGMAGHRTIEELLESAPDLYDITVFGEEPRPNYNRILLSS------------- 50

Query: 112 PGFHTCVGSGGER------QTPEWYKEKGIEMIYQDPVTSIDIEKQTLITNSGKLLKYGS 165
                 V +G +          +WY+E GI +   + V  ID   + + T++G+ + Y  
Sbjct: 51  ------VLAGEKTAEDISLNRNDWYEENGITLYTGEKVIQIDRANKVVTTDAGRTVSYDK 104

Query: 166 LIVATGCTASRFPEKIGGYLPGVHYIRDVADADALISSLEKAKKVVVVGGGYIGMEVAAA 225
           LI+ATG      P   G  LPGV   R + D +A++      KK VV+GGG +G+E A  
Sbjct: 105 LIIATGSYPFILPIP-GSDLPGVFVYRTIDDVEAMLDCARNKKKAVVIGGGLLGLEAARG 163

Query: 226 --------AVGWKLDTTRYEQLYQ-----------QNGVKFVKGASIKNLEAGSDGRVAA 266
                    V     T    QL +             G+K +   + +  E   + +V  
Sbjct: 164 LKDLGMEVTVVHIAPTLMERQLDRTAGRLLRRKLEDLGIKVLLEKNTE--EIVGEDKVEG 221

Query: 267 VKLEDGSTIDADTIVIGIGAKPTVSPFERVGLNSSVG-----GIQVDGQFRTRMPGIFAI 321
           V+  DG+ I AD +V+ +G +P         L    G     GI V+   +T  P I+A+
Sbjct: 222 VRFADGTEIPADLVVMAVGIRP------NDELAKEAGLAVNRGIVVNDYMQTSDPDIYAV 275

Query: 322 GDVAAFPLKMY 332
           G+ A    K+Y
Sbjct: 276 GECAEHRGKVY 286

Length = 793

>gnl|CDD|162827 TIGR02374, nitri_red_nirB, nitrite reductase [NAD(P)H], large subunit

 Score =  116 bits (293), Expect = 7e-28
 Identities = 73/291 (25%), Positives = 124/291 (42%), Gaps = 36/291 (12%)

Query: 55  VIVGGGNAAGYAARTFVEHGMADGRLCIVSKEAYAPYERPALTKGYLFPLDKKPARLPGF 114
           V+VG G A        ++       + I  +E +  Y R  L+       D     L   
Sbjct: 2   VLVGNGMAGHRCIEEVLKLNRHMFEITIFGEEPHPNYNRILLSSVLQGEADLDDITLNSK 61

Query: 115 HTCVGSGGERQTPEWYKEKGIEMIYQDPVTSIDIEKQTLITNSGKLLKYGSLIVATGCTA 174
                        +WY++ GI +   + V  ID +++ +IT++G+ L Y  LI+ATG   
Sbjct: 62  -------------DWYEKHGITLYTGETVIQIDTDQKQVITDAGRTLSYDKLILATGSYP 108

Query: 175 SRFPEKIGGYLPGVHYIRDVADADALISSLEKAKKVVVVGGGYIGMEVAAAAVGWKLDTT 234
              P   G    GV+  R + D DA+++  ++ KK  V+GGG +G+E A       +D +
Sbjct: 109 FILPIP-GADKKGVYVFRTIEDLDAIMAMAQRFKKAAVIGGGLLGLEAAVGLQNLGMDVS 167

Query: 235 RYE--------QLYQ-----------QNGVKFVKGASIKNLEAGSDGRVAAVKLEDGSTI 275
                      QL Q           Q G+ F+       +E     +   ++ +DGS++
Sbjct: 168 VIHHAPGLMAKQLDQTAGRLLQRELEQKGLTFLLEK--DTVEIVGATKADRIRFKDGSSL 225

Query: 276 DADTIVIGIGAKPTVSPFERVGLNSSVGGIQVDGQFRTRMPGIFAIGDVAA 326
           +AD IV+  G +P        G+  +  GI V+   +T  P I+A+G+ A 
Sbjct: 226 EADLIVMAAGIRPNDELAVSAGIKVN-RGIIVNDSMQTSDPDIYAVGECAE 275

[Central intermediary metabolism, Nitrogen metabolism]. Length = 785

>gnl|CDD|163244 TIGR03385, CoA_CoA_reduc, CoA-disulfide reductase

 Score = 97.1 bits (242), Expect = 7e-22
 Identities = 61/229 (26%), Positives = 104/229 (45%), Gaps = 33/229 (14%)

Query: 125 QTPE-WYKEKGIEMIYQDPVTSIDIEKQTLI-----TNSGKLLKYGSLIVATGCTASRFP 178
            TPE + K++GI++     V  ++ E+QT++     TN      Y  LI++ G +    P
Sbjct: 48  YTPEVFIKKRGIDVKTNHEVIEVNDERQTVVVRNNKTNETYEESYDYLILSPGASPIV-P 106

Query: 179 EKIGGYLPGVHYIRDVADADALISSLE--KAKKVVVVGGGYIGMEVAAAAVGWKLDTT-- 234
              G  L  V  +R++ D DA+   ++  K + VV++GGGYIG+E+A A      + T  
Sbjct: 107 NIEGINLDIVFTLRNLEDTDAIKQYIDKNKVENVVIIGGGYIGIEMAEALRERGKNVTLI 166

Query: 235 -RYEQLY----------------QQNGVKFVKGASIKNLEAGSDGRVAAVKLEDGSTIDA 277
            R E++                 +++ +       + ++E    G         G    A
Sbjct: 167 HRSERILNKLFDEEMNQIVEEELKKHEINLRLNEEVDSIE----GEERVKVFTSGGVYQA 222

Query: 278 DTIVIGIGAKPTVSPFERVGLNSSV-GGIQVDGQFRTRMPGIFAIGDVA 325
           D +++  G KP     +  GL     G I V+ +F+T +P I+A GDVA
Sbjct: 223 DMVILATGIKPNSELAKDSGLKLGETGAIWVNEKFQTSVPNIYAAGDVA 271

Members of this protein family are CoA-disulfide reductase (EC 1.8.1.14), as characterized in Staphylococcus aureus, Pyrococcus horikoshii, and Borrelia burgdorferi, and inferred in several other species on the basis of high levels of CoA and an absence of glutathione as a protective thiol [Cellular processes, Detoxification]. Length = 427

>gnl|CDD|233368 TIGR01350, lipoamide_DH, dihydrolipoamide dehydrogenase

 Score = 92.7 bits (231), Expect = 2e-20
 Identities = 48/196 (24%), Positives = 81/196 (41%), Gaps = 27/196 (13%)

Query: 155 TNSGKLLKYGSLIVATGCTASRFPEKIGGYLPGVHYIRDVADADALISSLEKAKKVVVVG 214
            N  + L+  ++I+ATG      P    G       +  V  +   ++  E  + +V++G
Sbjct: 124 ENGEETLEAKNIIIATGSRPRSLP----GPFDFDGKV--VITSTGALNLEEVPESLVIIG 177

Query: 215 GGYIGMEVAAAAVGWKLDTTRYEQL------------------YQQNGVKFVKGASIKNL 256
           GG IG+E A+         T  E L                   ++ GVK +    +  +
Sbjct: 178 GGVIGVEFASIFASLGSKVTVIEMLDRILPGEDAEVSKVLQKALKKKGVKILTNTKVTAV 237

Query: 257 EAGSDGRVAAVKLEDGSTIDADTIVIGIGAKPTVSPF--ERVGLN-SSVGGIQVDGQFRT 313
           E   D      K  +  T+  + +++ +G KP       E++G+     G I VD   RT
Sbjct: 238 EKNDDQVTYENKGGETETLTGEKVLVAVGRKPNTEGLGLEKLGVELDERGRIVVDEYMRT 297

Query: 314 RMPGIFAIGDVAAFPL 329
            +PGI+AIGDV   P+
Sbjct: 298 NVPGIYAIGDVIGGPM 313

This model describes dihydrolipoamide dehydrogenase, a flavoprotein that acts in a number of ways. It is the E3 component of dehydrogenase complexes for pyruvate, 2-oxoglutarate, 2-oxoisovalerate, and acetoin. It can also serve as the L protein of the glycine cleavage system. This family includes a few members known to have distinct functions (ferric leghemoglobin reductase and NADH:ferredoxin oxidoreductase) but that may be predicted by homology to act as dihydrolipoamide dehydrogenase as well. The motif GGXCXXXGCXP near the N-terminus contains a redox-active disulfide. Length = 460

>gnl|CDD|224172 COG1252, Ndh, NADH dehydrogenase, FAD-containing subunit [Energy production and conversion]

 Score = 90.8 bits (226), Expect = 7e-20
 Identities = 67/331 (20%), Positives = 110/331 (33%), Gaps = 90/331 (27%)

Query: 55  VIVGGGNAAGYAARTFVEHGMADGRLCIVSKEAYAPY--ERPALTKGYLFPLDKKPARLP 112
           VI+GGG     AA+        D  + +V +  Y  +      +  G    L +    +P
Sbjct: 7   VILGGGFGGLSAAKRLARKL-PDVEITLVDRRDYHLFTPLLYEVATG---TLSESEIAIP 62

Query: 113 GFHTCVGSGGERQTPEWYKEKGIEMIYQDPVTSIDIEKQTLITNSGKLLKYGSLIVATGC 172
                             ++ G     Q  VT ID + + +       + Y  L+VA G 
Sbjct: 63  -------------LRALLRKSGNVQFVQGEVTDIDRDAKKVTLADLGEISYDYLVVALGS 109

Query: 173 TASRFPEKIGGYLPGV----HYIRDVADADA----LISSLEKAKK---------VVVVGG 215
             + F       +PG       ++ + DA      L+ + EKA +         +V+VGG
Sbjct: 110 ETNYFG------IPGAAEYAFGLKTLEDALRLRRHLLEAFEKASQEEDDRALLTIVIVGG 163

Query: 216 GYIGMEVAAAAVGWKLDTTRY-------------------------------EQLYQQNG 244
           G  G+E+A           +                                E+  ++ G
Sbjct: 164 GPTGVELAGELAERLHRLLKKFRVDPSELRVILVEAGPRILPMFPPKLSKYAERALEKLG 223

Query: 245 VKFVKGASIKNLEAGSDGRVAAVKLEDG-STIDADTIVIGIGAKP-----TVSPFERVGL 298
           V+ + G  +  +          V L+DG   I ADT+V   G +       +S  E    
Sbjct: 224 VEVLLGTPVTEVTPDG------VTLKDGEEEIPADTVVWAAGVRASPLLKDLSGLE---- 273

Query: 299 NSSVGGIQVDGQFR-TRMPGIFAIGDVAAFP 328
               G + V+   +    P IFA GD AA  
Sbjct: 274 TDRRGRLVVNPTLQVPGHPDIFAAGDCAAVI 304

Length = 405

>gnl|CDD|224169 COG1249, Lpd, Pyruvate/2-oxoglutarate dehydrogenase complex, dihydrolipoamide dehydrogenase (E3) component, and related enzymes [Energy production and conversion]

 Score = 90.0 bits (224), Expect = 2e-19
 Identities = 85/327 (25%), Positives = 132/327 (40%), Gaps = 70/327 (21%)

Query: 55  VIVGGGNAAGY-AARTFVEHGM------ADGRL--------CIVSK------EAYAPYER 93
           V++G G  AGY AA    + G+         RL        CI SK      E       
Sbjct: 8   VVIGAG-PAGYVAAIRAAQLGLKVALVEKGERLGGTCLNVGCIPSKALLHAAEVIEEARH 66

Query: 94  PALTKGYLFPLDKKP-----ARLPGFHTCVGSGGERQTPEWYKEKGIEMIY-----QDPV 143
            A   G    + K       AR       +  G E       K+ G+++I       DP 
Sbjct: 67  AAKEYGISAEVPKIDFEKLLARKDKVVRLLTGGVEG----LLKKNGVDVIRGEARFVDP- 121

Query: 144 TSIDIEKQTLITNSGKLLKYGSLIVATGCTASRFPEKIGGYLPGVHYIRDVADADALISS 203
            ++++  +   T +       ++I+ATG +  R P   G  + G   +    D+   +  
Sbjct: 122 HTVEVTGEDKETITAD-----NIIIATG-SRPRIPPGPG--IDGARIL----DSSDALFL 169

Query: 204 LEKAKKVVVVGGGYIGMEVAAAAVGWKLDTTRYE------------------QLYQQNGV 245
           LE  K +V+VGGGYIG+E A+         T  E                  +  ++ GV
Sbjct: 170 LELPKSLVIVGGGYIGLEFASVFAALGSKVTVVERGDRILPGEDPEISKELTKQLEKGGV 229

Query: 246 KFVKGASIKNLEAGSDGRVAAVKLEDGSTIDADTIVIGIGAKPTVSPF--ERVGLN-SSV 302
           K +    +  +E   DG +  ++  +G TI+AD +++ IG KP       E  G+     
Sbjct: 230 KILLNTKVTAVEKKDDGVLVTLEDGEGGTIEADAVLVAIGRKPNTDGLGLENAGVELDDR 289

Query: 303 GGIQVDGQFRTRMPGIFAIGDVAAFPL 329
           G I+VD Q  T +PGI+AIGDV   P+
Sbjct: 290 GFIKVDDQMTTNVPGIYAIGDVIGGPM 316

Length = 454

>gnl|CDD|181958 PRK09564, PRK09564, coenzyme A disulfide reductase; Reviewed

 Score = 82.8 bits (205), Expect = 5e-17
 Identities = 61/227 (26%), Positives = 97/227 (42%), Gaps = 31/227 (13%)

Query: 126 TPEWYKEKGIEMIYQDPVTSIDIEKQTLI-----TNSGKLLKYGSLIVATGCTASRFPEK 180
           TPE + + GI++  +  V  +D + +T+      T S     Y  L++ATG      P  
Sbjct: 62  TPEEFIKSGIDVKTEHEVVKVDAKNKTITVKNLKTGSIFNDTYDKLMIATGAR-PIIPPI 120

Query: 181 IGGYLPGVHYIRDVADADALISSL--EKAKKVVVVGGGYIGMEVAAAAV----------- 227
               L  V+ ++ + D  AL   L  E+ K +V++G G+IG+E   AA            
Sbjct: 121 KNINLENVYTLKSMEDGLALKELLKDEEIKNIVIIGAGFIGLEAVEAAKHLGKNVRIIQL 180

Query: 228 -----GWKLD---TTRYEQLYQQNGVKFVKGASIKNLEAGSDGRVAAVKLEDGSTIDADT 279
                    D   T   E+  ++NGV+      +K+L    + +V  V   D    +AD 
Sbjct: 181 EDRILPDSFDKEITDVMEEELRENGVELHLNEFVKSLIG--EDKVEGVV-TDKGEYEADV 237

Query: 280 IVIGIGAKPTVSPFERVGLNS-SVGGIQVDGQFRTRMPGIFAIGDVA 325
           +++  G KP     E  GL +   G I VD    T +  I+A GD A
Sbjct: 238 VIVATGVKPNTEFLEDTGLKTLKNGAIIVDEYGETSIENIYAAGDCA 284

Length = 444

>gnl|CDD|235701 PRK06116, PRK06116, glutathione reductase; Validated

 Score = 79.0 bits (196), Expect = 7e-16
 Identities = 43/142 (30%), Positives = 61/142 (42%), Gaps = 30/142 (21%)

Query: 208 KKVVVVGGGYIGMEVAAAAVGWKLDTTRYEQLY---------------------QQNGVK 246
           K+V VVG GYI +E A    G   +T                            ++ G++
Sbjct: 168 KRVAVVGAGYIAVEFAGVLNGLGSETH---LFVRGDAPLRGFDPDIRETLVEEMEKKGIR 224

Query: 247 FVKGASIKNLEAGSDGRVAAVKLEDGSTIDADTIVIGIGAKPTVSPF--ERVG--LNSSV 302
               A  K +E  +DG +  + LEDG T+  D ++  IG +P       E  G  LN   
Sbjct: 225 LHTNAVPKAVEKNADGSLT-LTLEDGETLTVDCLIWAIGREPNTDGLGLENAGVKLNEK- 282

Query: 303 GGIQVDGQFRTRMPGIFAIGDV 324
           G I VD    T +PGI+A+GDV
Sbjct: 283 GYIIVDEYQNTNVPGIYAVGDV 304

Length = 450

>gnl|CDD|235660 PRK05976, PRK05976, dihydrolipoamide dehydrogenase; Validated

 Score = 78.4 bits (194), Expect = 1e-15
 Identities = 55/183 (30%), Positives = 89/183 (48%), Gaps = 31/183 (16%)

Query: 166 LIVATGCTASRFPEKIGGYLPGVHYIRDVADADALISSLEK-AKKVVVVGGGYIGMEVAA 224
           L++ATG   SR P ++ G      Y+  ++  +AL  SLE   K +V+VGGG IG+E A+
Sbjct: 146 LLIATG---SR-PVELPGLPFDGEYV--ISSDEAL--SLETLPKSLVIVGGGVIGLEWAS 197

Query: 225 AAVGWKLDTTRYE------------------QLYQQNGVKFVKGASIKNLEAGSDGRVAA 266
               + ++ T  E                  +L ++ GV+ V GA +  L    DG V  
Sbjct: 198 MLADFGVEVTVVEAADRILPTEDAELSKEVARLLKKLGVRVVTGAKVLGLTLKKDGGVLI 257

Query: 267 VKLEDGS--TIDADTIVIGIGAKPTVSPF--ERVGLNSSVGGIQVDGQFRTRMPGIFAIG 322
           V   +G   T++AD +++ +G +P       E   ++   G IQ+D   +T+   I+AIG
Sbjct: 258 VAEHNGEEKTLEADKVLVSVGRRPNTEGIGLENTDIDVEGGFIQIDDFCQTKERHIYAIG 317

Query: 323 DVA 325
           DV 
Sbjct: 318 DVI 320

Length = 472

>gnl|CDD|179902 PRK04965, PRK04965, NADH:flavorubredoxin oxidoreductase; Provisional

 Score = 76.9 bits (190), Expect = 3e-15
 Identities = 55/211 (26%), Positives = 94/211 (44%), Gaps = 28/211 (13%)

Query: 135 IEMIYQDPVTSIDIEKQTLITNSGKLLKYGSLIVATGCTASRFPEKIGGYLPGVHYIRDV 194
           + +     VT ID E Q + +  G   +Y  L++ATG +A   P      +  ++  ++ 
Sbjct: 73  LRLFPHTWVTDIDAEAQVVKSQ-GNQWQYDKLVLATGASAFVPPIPGRELMLTLNSQQEY 131

Query: 195 ADADALISSLEKAKKVVVVGGGYIGMEVAA--AAVGWK---LD--------------TTR 235
             A+  +     A++V+VVGGG IG E+A      G     +D              ++R
Sbjct: 132 RAAETQLRD---AQRVLVVGGGLIGTELAMDLCRAGKAVTLVDNAASLLASLMPPEVSSR 188

Query: 236 YEQLYQQNGVKFVKGASIKNLEAGSDGRVAAVKLEDGSTIDADTIVIGIGAKPTVSPFER 295
            +    + GV  +  + ++ LE    G      L+ G +I+ D ++   G +P  +   R
Sbjct: 189 LQHRLTEMGVHLLLKSQLQGLEKTDSGIR--ATLDSGRSIEVDAVIAAAGLRPNTALARR 246

Query: 296 VGLNSSVG-GIQVDGQFRTRMPGIFAIGDVA 325
            GL  +V  GI VD   +T  P I+A+GD A
Sbjct: 247 AGL--AVNRGIVVDSYLQTSAPDIYALGDCA 275

Length = 377

>gnl|CDD|223566 COG0492, TrxB, Thioredoxin reductase [Posttranslational modification, protein turnover, chaperones]

 Score = 75.0 bits (185), Expect = 6e-15
 Identities = 75/316 (23%), Positives = 113/316 (35%), Gaps = 82/316 (25%)

Query: 55  VIVGGG----NAAGYAAR------TFVEHGMADGRLCIVSKEAYAPYERPALTKGYLFPL 104
           +I+GGG     AA YAAR        +E G   G+L            +    + Y    
Sbjct: 7   IIIGGGPAGLTAAIYAARAGLKVVLILEGGEPGGQL-----------TKTTDVENY---- 51

Query: 105 DKKPARLPGFHTCVGSGGERQTPEWYKEK--------GIEMIYQDPVTSIDIEKQT-LIT 155
                  PGF                 E+        G+E++  D V  +++E     + 
Sbjct: 52  -------PGFP-------GGILGPELMEQMKEQAEKFGVEIVE-DEVEKVELEGGPFKVK 96

Query: 156 NSGKLLKYGSLIVATGCTASRFPEKIGGYLP----GVHYIRDVADADALISSLEKAKKVV 211
                 +  ++I+ATG  A      + G       GV Y    A  D       K K VV
Sbjct: 97  TDKGTYEAKAVIIATG--AGARKLGVPGEEEFEGKGVSY---CATCDGF----FKGKDVV 147

Query: 212 VVGGGYIGMEVAAAAVGWKLDTT---RY----------EQLYQQNGVKFVKGASIKNLEA 258
           V+GGG   +E A          T   R           E+L +   ++ +    +K +  
Sbjct: 148 VIGGGDSAVEEALYLSKIAKKVTLVHRRDEFRAEEILVERLKKNVKIEVLTNTVVKEIL- 206

Query: 259 GSDGRVAAVKLEDG----STIDADTIVIGIGAKPTVSPFERVGLNSSVGGIQVDGQFRTR 314
           G D  V  V L++       +  D + I IG  P     + +G+    G I VD +  T 
Sbjct: 207 GDD--VEGVVLKNVKGEEKELPVDGVFIAIGHLPNTELLKGLGVLDENGYIVVDEEMETS 264

Query: 315 MPGIFAIGDVAAFPLK 330
           +PGIFA GDVA    +
Sbjct: 265 VPGIFAAGDVADKNGR 280

Length = 305

>gnl|CDD|184951 PRK14989, PRK14989, nitrite reductase subunit NirD; Provisional

 Score = 75.2 bits (185), Expect = 3e-14
 Identities = 58/227 (25%), Positives = 112/227 (49%), Gaps = 23/227 (10%)

Query: 127 PEWYKEKGIEMIYQDPVTSIDIEKQTLITNSGKLLKYGSLIVATGCTASRFPEKIGGYLP 186
             +Y++ GI+++  +   +I+ +++ + +++G+ + Y  LI+ATG      P K G    
Sbjct: 66  EGFYEKHGIKVLVGERAITINRQEKVIHSSAGRTVFYDKLIMATGSYPWIPPIK-GSETQ 124

Query: 187 GVHYIRDVADADALISSLEKAKKVVVVGGGYIGMEVAAA--AVGWKLDTTRY------EQ 238
                R + D +A+ +   ++K+  VVGGG +G+E A A   +G +     +      EQ
Sbjct: 125 DCFVYRTIEDLNAIEACARRSKRGAVVGGGLLGLEAAGALKNLGVETHVIEFAPMLMAEQ 184

Query: 239 LYQQNGVKF--------VKGASIKN----LEAGSDGRVAAVKLEDGSTIDADTIVIGIGA 286
           L Q  G +         V+  + KN    ++ G + R   ++  DGS ++ D IV   G 
Sbjct: 185 LDQMGGEQLRRKIESMGVRVHTSKNTLEIVQEGVEAR-KTMRFADGSELEVDFIVFSTGI 243

Query: 287 KPTVSPFERVGLN-SSVGGIQVDGQFRTRMPGIFAIGDVAAFPLKMY 332
           +P      + GL  +  GGI ++   +T  P I+AIG+ A++  +++
Sbjct: 244 RPQDKLATQCGLAVAPRGGIVINDSCQTSDPDIYAIGECASWNNRVF 290

Length = 847

>gnl|CDD|184103 PRK13512, PRK13512, coenzyme A disulfide reductase; Provisional

 Score = 70.6 bits (173), Expect = 4e-13
 Identities = 55/222 (24%), Positives = 93/222 (41%), Gaps = 27/222 (12%)

Query: 126 TPEWYKE-KGIEMIYQDPVTSIDIEKQTL-----ITNSGKLLKYGSLIVATGCTASRFPE 179
           TPE + + K I +     V +I+ E+QT+      TN      Y  LI++ G +A+    
Sbjct: 63  TPEKFYDRKQITVKTYHEVIAINDERQTVTVLNRKTNEQFEESYDKLILSPGASANSLGF 122

Query: 180 KIGGYLPGVHYIRDVADADALISSLE--KAKKVVVVGGGYIGMEVAAAAVGWKLDTT--- 234
           +          +R++ D DA+   ++  +  K +VVG GYI +EV        L  T   
Sbjct: 123 ES----DITFTLRNLEDTDAIDQFIKANQVDKALVVGAGYISLEVLENLYERGLHPTLIH 178

Query: 235 RYEQ---LYQQNGVKFV------KGASIKNLEAGSDGRVAAVKLEDGSTIDADTIVIGIG 285
           R ++   L   +  + +      +    +  E         V  + G     D I+ G+G
Sbjct: 179 RSDKINKLMDADMNQPILDELDKREIPYRLNEEIDAINGNEVTFKSGKVEHYDMIIEGVG 238

Query: 286 AKPTVSPFE--RVGLNSSVGGIQVDGQFRTRMPGIFAIGDVA 325
             P     E   + L+   G I V+ +F T +P I+AIGD+ 
Sbjct: 239 THPNSKFIESSNIKLDDK-GFIPVNDKFETNVPNIYAIGDII 279

Length = 438

>gnl|CDD|236106 PRK07818, PRK07818, dihydrolipoamide dehydrogenase; Reviewed

 Score = 69.7 bits (171), Expect = 1e-12
 Identities = 53/192 (27%), Positives = 85/192 (44%), Gaps = 31/192 (16%)

Query: 158 GKLLKYGSLIVATGCTASRFPEKIGGYLPGVHYIRDVADADALISSLEKAKKVVVVGGGY 217
            + + + + I+ATG +           LPG     +V   +  I S E  K +V+ G G 
Sbjct: 131 TETVTFDNAIIATGSSTR--------LLPGTSLSENVVTYEEQILSRELPKSIVIAGAGA 182

Query: 218 IGMEVAAAAVGWKLDTTRYEQL------------------YQQNGVKFVKGASIKNLEAG 259
           IGME A     + +D T  E L                  Y++ GVK + G  +++++  
Sbjct: 183 IGMEFAYVLKNYGVDVTIVEFLDRALPNEDAEVSKEIAKQYKKLGVKILTGTKVESIDDN 242

Query: 260 SDGRVAAVKLEDGS--TIDADTIVIGIGAKPTVSPF--ERVGLN-SSVGGIQVDGQFRTR 314
                  V  +DG    ++AD ++  IG  P V  +  E+ G+  +  G I +D   RT 
Sbjct: 243 GSKVTVTVSKKDGKAQELEADKVLQAIGFAPRVEGYGLEKTGVALTDRGAIAIDDYMRTN 302

Query: 315 MPGIFAIGDVAA 326
           +P I+AIGDV A
Sbjct: 303 VPHIYAIGDVTA 314

Length = 466

>gnl|CDD|235798 PRK06416, PRK06416, dihydrolipoamide dehydrogenase; Reviewed

 Score = 68.2 bits (168), Expect = 2e-12
 Identities = 61/203 (30%), Positives = 96/203 (47%), Gaps = 44/203 (21%)

Query: 155 TNSGKLLKYGSLIVATGCTASRFPE-KIGGYLPGVHYIRDVADAD-ALISSLEKA-KKVV 211
            +  +     ++I+ATG      P  +I G        R +  +D AL  +L++  K +V
Sbjct: 127 EDGEQTYTAKNIILATGSRPRELPGIEIDG--------RVIWTSDEAL--NLDEVPKSLV 176

Query: 212 VVGGGYIGMEVAAAAVGWK---LDTTRYEQL------------------YQQNGVKFVKG 250
           V+GGGYIG+E A+A   +     + T  E L                   ++ G+K   G
Sbjct: 177 VIGGGYIGVEFASA---YASLGAEVTIVEALPRILPGEDKEISKLAERALKKRGIKIKTG 233

Query: 251 ASIKNLEAGSDGRVAAVKLEDG---STIDADTIVIGIGAKPTVSP--FERVGLNSSVGGI 305
           A  K +E   DG    V LEDG    T++AD +++ +G +P       E +G+ +  G I
Sbjct: 234 AKAKKVEQTDDG--VTVTLEDGGKEETLEADYVLVAVGRRPNTENLGLEELGVKTDRGFI 291

Query: 306 QVDGQFRTRMPGIFAIGDVAAFP 328
           +VD Q RT +P I+AIGD+   P
Sbjct: 292 EVDEQLRTNVPNIYAIGDIVGGP 314

Length = 462

>gnl|CDD|235373 PRK05249, PRK05249, soluble pyridine nucleotide transhydrogenase; Provisional

 Score = 67.9 bits (167), Expect = 3e-12
 Identities = 43/156 (27%), Positives = 73/156 (46%), Gaps = 23/156 (14%)

Query: 194 VADADALISSLEKAKKVVVVGGGYIGMEVAA--AAVGWKLD-TTRYEQL----------- 239
           + D+D+++S     + +++ G G IG E A+  AA+G K+      ++L           
Sbjct: 162 IYDSDSILSLDHLPRSLIIYGAGVIGCEYASIFAALGVKVTLINTRDRLLSFLDDEISDA 221

Query: 240 --YQ--QNGVKFVKGASIKNLEAGSDGRVAAVKLEDGSTIDADTIVIGIGAKPTVSPF-- 293
             Y    +GV       ++ +E G DG +  V L+ G  I AD ++   G          
Sbjct: 222 LSYHLRDSGVTIRHNEEVEKVEGGDDGVI--VHLKSGKKIKADCLLYANGRTGNTDGLNL 279

Query: 294 ERVGLN-SSVGGIQVDGQFRTRMPGIFAIGDVAAFP 328
           E  GL   S G ++V+  ++T +P I+A+GDV  FP
Sbjct: 280 ENAGLEADSRGQLKVNENYQTAVPHIYAVGDVIGFP 315

Length = 461

>gnl|CDD|130488 TIGR01421, gluta_reduc_1, glutathione-disulfide reductase, animal/bacterial

 Score = 67.6 bits (165), Expect = 5e-12
 Identities = 79/320 (24%), Positives = 133/320 (41%), Gaps = 67/320 (20%)

Query: 53  EFVIVGGGN--------AAGYAARTFVEHGMADGRLCI----VSKE----AYAPYERPAL 96
           +++++GGG+        AA + A+  +      G  C+    V K+    A    ER   
Sbjct: 4   DYLVIGGGSGGIASARRAAEHGAKALLVEAKKLGGTCVNVGCVPKKVMWYASDLAERMHD 63

Query: 97  TKGYLFPL-DKKPARLPGFHTCVGSGGERQTPEWYKEKGIEMIYQDPVTSIDIE------ 149
              Y F    +     P           ++  + Y ++ +  IYQ  +    ++      
Sbjct: 64  AADYGFYQNLENTFNWPEL---------KEKRDAYVDR-LNGIYQKNLEKNKVDVIFGHA 113

Query: 150 ---KQTLITNSGKLLKYGSLIVATGCTASRFPEKIGGYLPGVHYIRDVADADALISSLEK 206
              K   +  +G+      +++ATG   S FPE I G   G        D+D   +  E 
Sbjct: 114 RFTKDGTVEVNGRDYTAPHILIATGGKPS-FPENIPGAELGT-------DSDGFFALEEL 165

Query: 207 AKKVVVVGGGYIGMEVAAAAVGWKLDTT---RYEQL---------------YQQNGVKFV 248
            K+VV+VG GYI +E+A    G   +T    R+E++               Y++ G+   
Sbjct: 166 PKRVVIVGAGYIAVELAGVLHGLGSETHLVIRHERVLRSFDSMISETITEEYEKEGINVH 225

Query: 249 KGASIKNLEAGSDGRVAAVKLEDGSTI-DADTIVIGIGAKPTVSPF--ERVGLN-SSVGG 304
           K +    +E   +G++  +  EDG +I D D ++  IG KP       E VG+  +  G 
Sbjct: 226 KLSKPVKVEKTVEGKL-VIHFEDGKSIDDVDELIWAIGRKPNTKGLGLENVGIKLNEKGQ 284

Query: 305 IQVDGQFRTRMPGIFAIGDV 324
           I VD    T +PGI+A+GDV
Sbjct: 285 IIVDEYQNTNVPGIYALGDV 304

The tripeptide glutathione is an important reductant, e.g., for maintaining the cellular thiol/disulfide status and for protecting against reactive oxygen species such as hydrogen peroxide. Glutathione-disulfide reductase regenerates reduced glutathione from oxidized glutathione (glutathione disulfide) + NADPH. This model represents one of two closely related subfamilies of glutathione-disulfide reductase. Both are closely related to trypanothione reductase, and separate models are built so each of the three can describe proteins with conserved function. This model describes glutathione-disulfide reductases of animals, yeast, and a number of animal-resident bacteria [Energy metabolism, Electron transport]. Length = 450

>gnl|CDD|236967 PRK11749, PRK11749, dihydropyrimidine dehydrogenase subunit A; Provisional

 Score = 66.4 bits (163), Expect = 9e-12
 Identities = 56/210 (26%), Positives = 84/210 (40%), Gaps = 53/210 (25%)

Query: 162 KYGSLIVATGCTASRFPEKIGGYLPGVH----YIRDVADADALISSLEKAKKVVVVGGGY 217
            Y ++ + TG    RF    G  L GV+    ++  V  A A    L   K+VVV+GGG 
Sbjct: 225 GYDAVFIGTGAGLPRFLGIPGENLGGVYSAVDFLTRVNQAVAD-YDLPVGKRVVVIGGGN 283

Query: 218 IGMEVA-------AAAVGWKLDT------------TRYEQLY-QQNGVKFVKGASIKNLE 257
             M+ A       A +V     T            +  E  + ++ GV+F   A+   + 
Sbjct: 284 TAMDAARTAKRLGAESV-----TIVYRRGREEMPASEEEVEHAKEEGVEFEWLAAPVEIL 338

Query: 258 AGSDGRVAAVKLE-----------------DGS--TIDADTIVIGIGAKP---TVSPFER 295
            G +GRV  V+                   +GS  T+ AD ++  IG  P    +S    
Sbjct: 339 -GDEGRVTGVEFVRMELGEPDASGRRRVPIEGSEFTLPADLVIKAIGQTPNPLILSTTPG 397

Query: 296 VGLNSSVGGIQVDGQFRTRMPGIFAIGDVA 325
           + LN     I  D   RT +PG+FA GD+ 
Sbjct: 398 LELNRWGTIIADDETGRTSLPGVFAGGDIV 427

Length = 457

>gnl|CDD|235787 PRK06370, PRK06370, mercuric reductase; Validated

 Score = 65.6 bits (161), Expect = 2e-11
 Identities = 49/204 (24%), Positives = 76/204 (37%), Gaps = 57/204 (27%)

Query: 157 SGKLLKYGSLIVATGCTASRFPEKIGGYLPGVHYIR-----DVADADALISSLEKAKKVV 211
            G+ L+   + + TG  A+  P      +PG+  +       +   D L   L      V
Sbjct: 128 GGETLRAKRIFINTGARAAI-PP-----IPGLDEVGYLTNETIFSLDELPEHL------V 175

Query: 212 VVGGGYIGMEVA---------------------------AAAVGWKLDTTRYEQLYQQNG 244
           ++GGGYIG+E A                           AAAV          ++ ++ G
Sbjct: 176 IIGGGYIGLEFAQMFRRFGSEVTVIERGPRLLPREDEDVAAAV---------REILEREG 226

Query: 245 VKFVKGASIKNLEAGSDGRVAAVKLEDGS-TIDADTIVIGIGAKPTVSPF--ERVGLN-S 300
           +     A    +E   DG    +    G+  I    I++ +G  P       E  G+   
Sbjct: 227 IDVRLNAECIRVERDGDGIAVGLDCNGGAPEITGSHILVAVGRVPNTDDLGLEAAGVETD 286

Query: 301 SVGGIQVDGQFRTRMPGIFAIGDV 324
           + G I+VD Q RT  PGI+A GD 
Sbjct: 287 ARGYIKVDDQLRTTNPGIYAAGDC 310

Length = 463

>gnl|CDD|235779 PRK06327, PRK06327, dihydrolipoamide dehydrogenase; Validated

 Score = 63.8 bits (156), Expect = 7e-11
 Identities = 51/188 (27%), Positives = 79/188 (42%), Gaps = 34/188 (18%)

Query: 167 IVATGCTASRFPEKIGGYLPGVHY-IRDVADADALISSLEKAKKVVVVGGGYIGMEVAA- 224
           I+ATG            +LPGV +  + + D    ++  E  KK+ V+G G IG+E+ + 
Sbjct: 150 IIATGSEPR--------HLPGVPFDNKIILDNTGALNFTEVPKKLAVIGAGVIGLELGSV 201

Query: 225 ------------------AAVGWKLDTTRYEQLYQQNGVKFVKGASIKNLEAGSDGRVAA 266
                             AA   ++     +   +Q G+    G  I  ++ G  G   A
Sbjct: 202 WRRLGAEVTILEALPAFLAAADEQVAKEAAKAFTKQ-GLDIHLGVKIGEIKTGGKGVSVA 260

Query: 267 VKLEDGS--TIDADTIVIGIGAKPTVSPF--ERVGLN-SSVGGIQVDGQFRTRMPGIFAI 321
               DG   T++ D +++ IG  P       E VGL     G I VD   RT +P ++AI
Sbjct: 261 YTDADGEAQTLEVDKLIVSIGRVPNTDGLGLEAVGLKLDERGFIPVDDHCRTNVPNVYAI 320

Query: 322 GDVAAFPL 329
           GDV   P+
Sbjct: 321 GDVVRGPM 328

Length = 475

>gnl|CDD|233345 TIGR01292, TRX_reduct, thioredoxin-disulfide reductase

 Score = 62.6 bits (153), Expect = 8e-11
 Identities = 81/317 (25%), Positives = 129/317 (40%), Gaps = 81/317 (25%)

Query: 55  VIVGGG----NAAGYAART-----FVEHGMADGRLCIVSK-EAYAPYERPALTKGYLFPL 104
           +I+G G     AA YAAR       +E G   G+L   ++ E Y                
Sbjct: 3   IIIGAGPAGLTAAIYAARANLKPLLIEGGEPGGQLTTTTEVENY---------------- 46

Query: 105 DKKPARLPGFHTCVGSGGERQTPEWYKEK---GIEMIYQDPVTSIDIEKQT--LITNSGK 159
                  PGF   + SG E    +  ++    G E+IY++ V  +D   +   + T  GK
Sbjct: 47  -------PGFPEGI-SGPELME-KMKEQAVKFGAEIIYEE-VIKVDKSGRPFKVYTGDGK 96

Query: 160 LLKYGSLIVATGCTASRFPEKIGGYLP--------GVHYIRDVADADALISSLEKAKKVV 211
                ++I+ATG  AS    K+G  +P        GV Y    A  D       K K+V 
Sbjct: 97  EYTAKAVIIATG--AS--ARKLG--IPGEDEFWGRGVSY---CATCDG---PFFKNKEVA 144

Query: 212 VVGGGYIGMEVA------AAAV-------GWKLDTTRYEQLYQQNGVKFVKGASIKNLEA 258
           VVGGG   +E A      A  V        ++ +    ++L +   ++F+  +++K  E 
Sbjct: 145 VVGGGDSAIEEALYLTRIAKKVTLVHRRDKFRAEKILLDRLKKNPKIEFLWNSTVK--EI 202

Query: 259 GSDGRVAAVKLEDG-----STIDADTIVIGIGAKPTVSPFERVGLNSSVGGIQVDGQFRT 313
             D +V  VK+++        ++ D + I IG +P     + +      G I  D   RT
Sbjct: 203 VGDNKVEGVKIKNTVTGEEEELEVDGVFIAIGHEPNTELLKGLLELDENGYIVTDEGMRT 262

Query: 314 RMPGIFAIGDVAAFPLK 330
            +PG+FA GDV     +
Sbjct: 263 SVPGVFAAGDVRDKGYR 279

This model describes thioredoxin-disulfide reductase, a member of the pyridine nucleotide-disulphide oxidoreductases (pfam00070) [Energy metabolism, Electron transport]. Length = 299

>gnl|CDD|233700 TIGR02053, MerA, mercuric reductase

 Score = 63.2 bits (154), Expect = 1e-10
 Identities = 45/180 (25%), Positives = 78/180 (43%), Gaps = 29/180 (16%)

Query: 167 IVATGCTASRFPEKIGGYLPGVHYIRDVADADALISSLEKAKKVVVVGGGYIGMEVAAAA 226
           ++ATG   +  P      +PG+        ++  ++     + + V+GGG IG+E+A A 
Sbjct: 133 LIATGARPAIPP------IPGLKEA-GYLTSEEALALDRIPESLAVIGGGAIGVELAQAF 185

Query: 227 VGWKLDTT----------RYE--------QLYQQNGVKFVKGASIKNLEAGSDGRVAAVK 268
                + T          R E        +   + G++ V  A +K +     G++  V+
Sbjct: 186 ARLGSEVTILQRSDRLLPREEPEISAAVEEALAEEGIEVVTSAQVKAVSVRGGGKIITVE 245

Query: 269 LEDGS-TIDADTIVIGIGAKPTVSPF--ERVGLN-SSVGGIQVDGQFRTRMPGIFAIGDV 324
              G   ++AD +++  G +P       E+ G+     GGI VD   RT  PGI+A GDV
Sbjct: 246 KPGGQGEVEADELLVATGRRPNTDGLGLEKAGVKLDERGGILVDETLRTSNPGIYAAGDV 305

This model represents the mercuric reductase found in the mer operon for the detoxification of mercury compounds. MerA is a FAD-containing flavoprotein which reduces Hg(II) to Hg(0) utilizing NADPH [Cellular processes, Detoxification]. Length = 463

>gnl|CDD|235774 PRK06292, PRK06292, dihydrolipoamide dehydrogenase; Validated

 Score = 62.9 bits (154), Expect = 1e-10
 Identities = 53/197 (26%), Positives = 89/197 (45%), Gaps = 49/197 (24%)

Query: 165 SLIVATGCTASRFPEKIGGYLPGVHYIRDVADADALISS-----LEKA-KKVVVVGGGYI 218
           ++++ATG   SR P      +PGV     +   D L++S     L+K  K + V+GGG I
Sbjct: 133 NIVIATG---SRVPP-----IPGV----WLILGDRLLTSDDAFELDKLPKSLAVIGGGVI 180

Query: 219 GMEVAAA--AVGWKLDTTRYEQL-----------------YQQNGVKFVKGASIKNLEAG 259
           G+E+  A   +G  +  T +E+                        K   GA + ++E  
Sbjct: 181 GLELGQALSRLG--VKVTVFERGDRILPLEDPEVSKQAQKILSKEFKIKLGAKVTSVEKS 238

Query: 260 SDGRVAAVKLEDGS-TIDADTIVIGIGAKPTVSPFERVGL-NSSV-----GGIQVDGQFR 312
            D +V  ++    + TI+AD +++  G +P     + +GL N+ +     G   VD   +
Sbjct: 239 GDEKVEELEKGGKTETIEADYVLVATGRRPNT---DGLGLENTGIELDERGRPVVDEHTQ 295

Query: 313 TRMPGIFAIGDVAAFPL 329
           T +PGI+A GDV   P 
Sbjct: 296 TSVPGIYAAGDVNGKPP 312

Length = 460

>gnl|CDD|200098 TIGR01423, trypano_reduc, trypanothione-disulfide reductase

 Score = 61.5 bits (149), Expect = 4e-10
 Identities = 44/144 (30%), Positives = 69/144 (47%), Gaps = 25/144 (17%)

Query: 205 EKAKKVVVVGGGYIGMEVAA-----AAVGWKL-------------DTTRYEQLYQQ---N 243
           E  ++V+ VGGG+I +E A         G K+             D+T  ++L +Q   N
Sbjct: 185 EPPRRVLTVGGGFISVEFAGIFNAYKPRGGKVTLCYRNNMILRGFDSTLRKELTKQLRAN 244

Query: 244 GVKFVKGASIKNLEAGSDGRVAAVKLEDGSTIDADTIVIGIGAKPTVSPFE--RVGLN-S 300
           G+  +   +   +   +DG    V  E G T+D D +++ IG  P     +  +VG+  +
Sbjct: 245 GINIMTNENPAKVTLNADGS-KHVTFESGKTLDVDVVMMAIGRVPRTQTLQLDKVGVELT 303

Query: 301 SVGGIQVDGQFRTRMPGIFAIGDV 324
             G IQVD   RT +P I+AIGDV
Sbjct: 304 KKGAIQVDEFSRTNVPNIYAIGDV 327

Trypanothione, a glutathione-modified derivative of spermidine, is (in its reduced form) an important antioxidant found in trypanosomatids (Crithidia, Leishmania, Trypanosoma). This model describes trypanothione reductase, a possible antitrypanosomal drug target closely related to some forms of glutathione reductase. Length = 486

>gnl|CDD|237198 PRK12771, PRK12771, putative glutamate synthase (NADPH) small subunit; Provisional

 Score = 60.7 bits (148), Expect = 7e-10
 Identities = 54/215 (25%), Positives = 86/215 (40%), Gaps = 47/215 (21%)

Query: 182 GGYLPGVHYIRDVADADALISSLEKAKKVVVVGGGYIGMEVAAAAV--GWKLDTT----- 234
            G L  V ++R V + +         K+VVV+GGG   M+ A  A   G + + T     
Sbjct: 246 AGVLDAVDFLRAVGEGEPPFLG----KRVVVIGGGNTAMDAARTARRLGAE-EVTIVYRR 300

Query: 235 RYEQL---------YQQNGVKFVKGASIKNLEAGSDGRVAA--------VKLEDG----- 272
             E +           + GV+     +   +E   +G               EDG     
Sbjct: 301 TREDMPAHDEEIEEALREGVEINWLRTPVEIEGDENGATGLRVITVEKMELDEDGRPSPV 360

Query: 273 ----STIDADTIVIGIGAKPTVSPFERV-GLNSSVGGIQVDGQFR-TRMPGIFAIGDVAA 326
                T++AD +V+ IG     +  E V G+    G +QVD  F  T  PG+FA GD+  
Sbjct: 361 TGEEETLEADLVVLAIGQDIDSAGLESVPGVEVGRGVVQVDPNFMMTGRPGVFAGGDMVP 420

Query: 327 FPLKMYDRTARVEHVDHARQSAQHCIKALLSAQTH 361
            P     RT     + H +++A++ I A L  + +
Sbjct: 421 GP-----RTVTTA-IGHGKKAARN-IDAFLGGEPY 448

Length = 564

>gnl|CDD|237197 PRK12770, PRK12770, putative glutamate synthase subunit beta; Provisional

 Score = 59.6 bits (145), Expect = 9e-10
 Identities = 65/216 (30%), Positives = 89/216 (41%), Gaps = 50/216 (23%)

Query: 162 KYGSLIVATGCTASRFPEKIGGYLPGVH----YIRDVADADALISSLEKA-----KKVVV 212
           KY ++++ATG   SR     G  LPGV+    Y+  +  A       EK      KKVVV
Sbjct: 118 KYDAVLIATGTWKSRKLGIPGEDLPGVYSALEYLFRIRAAKLGYLPWEKVPPVEGKKVVV 177

Query: 213 VGGGYIGMEVA--AAAVGWKLDTTRY--------------EQLYQQNGVKF--------- 247
           VG G   ++ A  A  +G +     Y              E+L    GV+F         
Sbjct: 178 VGAGLTAVDAALEAVLLGAEKVYLAYRRTINEAPAGKYEIERL-IARGVEFLELVTPVRI 236

Query: 248 -----VKGASIKNLEAG---SDGRVAAVKLEDGST--IDADTIVIGIGAKPTVSPFERVG 297
                V+G  +  +  G     GR   V +  GS   ++ADT+V  IG  PT  PF +  
Sbjct: 237 IGEGRVEGVELAKMRLGEPDESGRPRPVPIP-GSEFVLEADTVVFAIGEIPT-PPFAKEC 294

Query: 298 L---NSSVGGIQVDGQFRTRMPGIFAIGDVAAFPLK 330
           L    +  G I VD +  T   G+FA GDV   P K
Sbjct: 295 LGIELNRKGEIVVDEKHMTSREGVFAAGDVVTGPSK 330

Length = 352

>gnl|CDD|180907 PRK07251, PRK07251, pyridine nucleotide-disulfide oxidoreductase; Provisional

 Score = 59.8 bits (145), Expect = 1e-09
 Identities = 52/184 (28%), Positives = 86/184 (46%), Gaps = 36/184 (19%)

Query: 165 SLIVATGCTASRFPEKIGGYLPGVHYIRDVADADALISSLEKAKKVVVVGGGYIGMEVAA 224
           ++++ TG  ++  P      +PG+   + V D+  + S     +++ ++GGG IG+E A 
Sbjct: 121 TIVINTGAVSNVLP------IPGLADSKHVYDSTGIQSLETLPERLGIIGGGNIGLEFAG 174

Query: 225 --AAVGWK---LDTT-----RYE----QLYQQ----NGVKFVKGASIKNLEAGSDGRVAA 266
               +G K   LD       R E     L +Q    +G+ F+  A    ++   DG    
Sbjct: 175 LYNKLGSKVTVLDAASTILPREEPSVAALAKQYMEEDGITFLLNAHTTEVKN--DGDQVL 232

Query: 267 VKLEDGSTIDADTIVIGIGAKPTVSPFERVGL-NSSV-----GGIQVDGQFRTRMPGIFA 320
           V  ED  T   D ++   G KP   P   +GL N+ +     G I+VD   +T +PG+FA
Sbjct: 233 VVTEDE-TYRFDALLYATGRKPNTEP---LGLENTDIELTERGAIKVDDYCQTSVPGVFA 288

Query: 321 IGDV 324
           +GDV
Sbjct: 289 VGDV 292

Length = 438

>gnl|CDD|185420 PTZ00058, PTZ00058, glutathione reductase; Provisional

 Score = 60.0 bits (145), Expect = 1e-09
 Identities = 37/203 (18%), Positives = 78/203 (38%), Gaps = 32/203 (15%)

Query: 141 DPVTSIDIEKQTLITNSGKLLKYGSLIVATGCTASRFPEKIGGYLPGVHYIRDVADADAL 200
           D VT +      L  + G++++  ++++A G      P       P V        +D  
Sbjct: 183 DEVTIVSAGVSQL--DDGQVIEGKNILIAVGNK----PI-----FPDVKGKEFTISSDDF 231

Query: 201 ISSLEKAKKVVVVGGGYIGMEVAAAAVGWKLDTTRY------------------EQLYQQ 242
              +++AK++ + G GYI +E+         ++  +                  E   ++
Sbjct: 232 FK-IKEAKRIGIAGSGYIAVELINVVNRLGAESYIFARGNRLLRKFDETIINELENDMKK 290

Query: 243 NGVKFVKGASIKNLEAGSDGRVAAVKLEDGSTIDADTIVIGIGAKPTVSPFERVGLN--S 300
           N +  +  A+++ +E   +  +     +       D ++  +G  P         LN  +
Sbjct: 291 NNINIITHANVEEIEKVKEKNLTIYLSDGRKYEHFDYVIYCVGRSPNTEDLNLKALNIKT 350

Query: 301 SVGGIQVDGQFRTRMPGIFAIGD 323
             G I+VD   RT +  I+A+GD
Sbjct: 351 PKGYIKVDDNQRTSVKHIYAVGD 373

Length = 561

>gnl|CDD|215691 pfam00070, Pyr_redox, Pyridine nucleotide-disulphide oxidoreductase

 Score = 53.7 bits (130), Expect = 2e-09
 Identities = 23/82 (28%), Positives = 38/82 (46%), Gaps = 18/82 (21%)

Query: 209 KVVVVGGGYIGMEVAAAAVGWKLDTT------------------RYEQLYQQNGVKFVKG 250
           +VVVVGGGYIG+E A+A        T                    ++  ++NG++ +  
Sbjct: 1   RVVVVGGGYIGLEFASALAKLGSKVTVVERRDRLLRGFDEEIAKILQEKLEKNGIEVLLN 60

Query: 251 ASIKNLEAGSDGRVAAVKLEDG 272
            +++ +E   DG V  +K  DG
Sbjct: 61  TTVEEIEGNGDGVVVKLKTGDG 82

This family includes both class I and class II oxidoreductases and also NADH oxidases and peroxidases. This domain is actually a small NADH binding domain within a larger FAD binding domain. Length = 82

>gnl|CDD|234119 TIGR03140, AhpF, alkyl hydroperoxide reductase subunit F

 Score = 58.9 bits (143), Expect = 3e-09
 Identities = 60/212 (28%), Positives = 91/212 (42%), Gaps = 31/212 (14%)

Query: 143 VTSIDIEKQ----TLITNSGKLLKYGSLIVATGCTASRFPEKIGGYLPG-VHYI-RDVAD 196
             +  IE +     +   SG++LK  S+IVATG   +R+  K+G  +PG   YI + VA 
Sbjct: 288 QRAKKIETEDGLIVVTLESGEVLKAKSVIVATG---ARW-RKLG--VPGEKEYIGKGVAY 341

Query: 197 ADALISSLEKAKKVVVVGGGYIGMEVAAAAVG-------------WKLDTTRYEQLYQQN 243
                    K K V V+GGG  G+E A    G              K D    ++L    
Sbjct: 342 CPHCDGPFFKGKDVAVIGGGNSGIEAAIDLAGIVRHVTVLEFADELKADKVLQDKLKSLP 401

Query: 244 GVKFVKGASIKNLEAGSDGRVAAVKLEDGST-----IDADTIVIGIGAKPTVSPFERVGL 298
            V  +  A    +  G   +V  ++ +D ++     +D D + + IG  P     +    
Sbjct: 402 NVDILTSAQTTEI-VGDGDKVTGIRYQDRNSGEEKQLDLDGVFVQIGLVPNTEWLKDAVE 460

Query: 299 NSSVGGIQVDGQFRTRMPGIFAIGDVAAFPLK 330
            +  G I +D + RT +PGIFA GDV   P K
Sbjct: 461 LNRRGEIVIDERGRTSVPGIFAAGDVTTVPYK 492

This enzyme is the partner of the peroxiredoxin (alkyl hydroperoxide reductase) AhpC which contains the peroxide-reactive cysteine. AhpF contains the reductant (NAD(P)H) binding domain (pfam00070) and presumably acts to resolve the disulfide which forms after oxidation of the active site cysteine in AphC. This proteins contains two paired conserved cysteine motifs, CxxCP and CxHCDGP [Cellular processes, Detoxification, Cellular processes, Adaptations to atypical conditions]. Length = 515

>gnl|CDD|213618 TIGR01424, gluta_reduc_2, glutathione-disulfide reductase, plant

 Score = 58.7 bits (142), Expect = 3e-09
 Identities = 39/141 (27%), Positives = 61/141 (43%), Gaps = 28/141 (19%)

Query: 208 KKVVVVGGGYIGMEVAAAAVGWKLDTTRYEQLY---------------------QQNGVK 246
           K +++ GGGYI +E A    G  + TT    +Y                     ++ G++
Sbjct: 167 KSILIAGGGYIAVEFAGIFRGLGVQTT---LIYRGKEILRGFDDDMRRGLAAALEERGIR 223

Query: 247 FVKGASIKNLEAGSDGRVAAVKLEDGSTIDADTIVIGIGAKPTVS--PFERVGLN-SSVG 303
            +   SI ++    DGR+ A  L     I AD ++   G  P  +    E  G+  + +G
Sbjct: 224 ILPEDSITSISKDDDGRLKAT-LSKHEEIVADVVLFATGRSPNTNGLGLEAAGVRLNDLG 282

Query: 304 GIQVDGQFRTRMPGIFAIGDV 324
            I VD   RT  P I+A+GDV
Sbjct: 283 AIAVDEYSRTSTPSIYAVGDV 303

The tripeptide glutathione is an important reductant, e.g., for maintaining the cellular thiol/disulfide status and for protecting against reactive oxygen species such as hydrogen peroxide. Glutathione-disulfide reductase regenerates reduced glutathione from oxidized glutathione (glutathione disulfide) + NADPH. This model represents one of two closely related subfamilies of glutathione-disulfide reductase. Both are closely related to trypanothione reductase, and separate models are built so each of the three can describe proteins with conserved function. This model describes glutathione-disulfide reductases of plants and some bacteria, including cyanobacteria [Energy metabolism, Electron transport]. Length = 446

>gnl|CDD|234134 TIGR03169, Nterm_to_SelD, pyridine nucleotide-disulfide oxidoreductase family protein

 Score = 58.1 bits (141), Expect = 3e-09
 Identities = 65/318 (20%), Positives = 107/318 (33%), Gaps = 80/318 (25%)

Query: 55  VIVGGGNAAGYAARTFVEHGMADGRLCIVSKEAYAPYERPALTKGYLFPLDKKPARLPGF 114
           V++GGG+      R +    +   R+ +++  +  PY       G L      P  + G 
Sbjct: 3   VLIGGGHTHALVLRRWAMKPLPGVRVTLINPSSTTPYS------GML------PGMIAGH 50

Query: 115 HT-----------CVGSGGERQTPEWYKEKGIEMIYQDPVTSIDIEKQTLITNSGKLLKY 163
           ++              +G                      T ID +++ ++  +   L Y
Sbjct: 51  YSLDEIRIDLRRLARQAGAR--------------FVIAEATGIDPDRRKVLLANRPPLSY 96

Query: 164 GSLIVATGCT----------ASRFPEK-IGGYLPGVHYIRDVADADALISSLEKAKKVVV 212
             L +  G T              P K I  +L     + + ADA          K++ V
Sbjct: 97  DVLSLDVGSTTPLSGVEGAADLAVPVKPIENFLARWEALLESADAP------PGTKRLAV 150

Query: 213 VGGGYIGMEVAAAAVGWKLDTTR----YEQLYQQNGV-------------KFVKGASIKN 255
           VGGG  G+E+A A    +    R       L     +             + +    I+ 
Sbjct: 151 VGGGAAGVEIALAL--RRRLPKRGLRGQVTLIAGASLLPGFPAKVRRLVLRLLARRGIEV 208

Query: 256 LEAGSDGRVA--AVKLEDGSTIDADTIVIGIGAKPTVSP-FERVGLN-SSVGGIQVDGQF 311
            E     R    A+ L DG T+ AD I+   GA+    P     GL     G ++VD   
Sbjct: 209 HEGAPVTRGPDGALILADGRTLPADAILWATGARA--PPWLAESGLPLDEDGFLRVDPTL 266

Query: 312 RTR-MPGIFAIGDVAAFP 328
           ++   P +FA GD A   
Sbjct: 267 QSLSHPHVFAAGDCAVIT 284

Members of this protein family include N-terminal sequence regions of (probable) bifunctional proteins whose C-terminal sequences are SelD, or selenide,water dikinase, the selenium donor protein necessary for selenium incorporation into protein (as selenocysteine), tRNA (as 2-selenouridine), or both. However, some members of this family occur in species that do not show selenium incorporation, and the function of this protein family is unknown. Length = 364

>gnl|CDD|185416 PTZ00052, PTZ00052, thioredoxin reductase; Provisional

 Score = 55.2 bits (133), Expect = 4e-08
 Identities = 47/180 (26%), Positives = 73/180 (40%), Gaps = 30/180 (16%)

Query: 166 LIVATGCTASRFPEKIGGYLPGVHYIRDVADADALISSLEKAK-KVVVVGGGYIGMEVAA 224
           +++ATG   S  PE +    PG       +D    I SL K   K ++VG  YIG+E A 
Sbjct: 148 ILIATGGRPS-IPEDV----PGAKEYSITSDD---IFSLSKDPGKTLIVGASYIGLETAG 199

Query: 225 AAVGWKLDTT-----------------RYEQLYQQNGVKFVKGASIKNLEAGSDGRVAAV 267
                  D T                 +  +  ++ G  F++G    N+E   D     V
Sbjct: 200 FLNELGFDVTVAVRSIPLRGFDRQCSEKVVEYMKEQGTLFLEGVVPINIEKMDDK--IKV 257

Query: 268 KLEDGSTIDADTIVIGIGAKPTVS--PFERVGLNSSVGGIQVDGQFRTRMPGIFAIGDVA 325
              DG+T   DT++   G KP +       +G++ +     +     T +P IFA+GDV 
Sbjct: 258 LFSDGTTELFDTVLYATGRKPDIKGLNLNAIGVHVNKSNKIIAPNDCTNIPNIFAVGDVV 317

Length = 499

>gnl|CDD|130383 TIGR01316, gltA, glutamate synthase (NADPH), homotetrameric

 Score = 54.5 bits (131), Expect = 6e-08
 Identities = 44/212 (20%), Positives = 75/212 (35%), Gaps = 54/212 (25%)

Query: 162 KYGSLIVATGCTASRFPEKIGGYLPGVHYIRDVADADALI--------------SSLEKA 207
           +Y ++ + TG    +        +PG       +  D L               + +   
Sbjct: 218 QYDAVFIGTGAGLPKL-----MNIPGEELCGVYSANDFLTRANLMKAYEFPHADTPVYAG 272

Query: 208 KKVVVVGGGYIGMEVAAAAVGWKLDTT------------RYEQLYQ--QNGVKF------ 247
           K VVV+GGG   ++ A  A+    +              R E++    + GVKF      
Sbjct: 273 KSVVVIGGGNTAVDSARTALRLGAEVHCLYRRTREDMTARVEEIAHAEEEGVKFHFLCQP 332

Query: 248 ----------VKGASIKNLEAG----SDGRVAAVKLEDGSTIDADTIVIGIGAKPTVSPF 293
                     V+    + ++      S  R      +    ++AD +++ IG        
Sbjct: 333 VEIIGDEEGNVRAVKFRKMDCQEQIDSGERRFLPCGDAECKLEADAVIVAIGNGSNPIMA 392

Query: 294 ERVGLNSSV-GGIQVDGQFRTRMPGIFAIGDV 324
           E   L +S  G I VD   RT +PG+FA GD+
Sbjct: 393 ETTRLKTSERGTIVVDEDQRTSIPGVFAGGDI 424

This protein is homologous to the small subunit of NADPH and NADH forms of glutamate synthase as found in eukaryotes and some bacteria. This protein is found in numerous species having no homolog of the glutamate synthase large subunit. The prototype of the family, from Pyrococcus sp. KOD1, was shown to be active as a homotetramer and to require NADPH [Amino acid biosynthesis, Glutamate family]. Length = 449

>gnl|CDD|181142 PRK07846, PRK07846, mycothione reductase; Reviewed

 Score = 54.2 bits (131), Expect = 6e-08
 Identities = 55/224 (24%), Positives = 93/224 (41%), Gaps = 31/224 (13%)

Query: 152 TLITNSGKLLKYGSLIVATGCTASRFPEKIGGYLPGVHYIRDVADADALISSLEKAKKVV 211
           TL T  G+ +    +++A G +    P  I       H    +     L  SL      V
Sbjct: 118 TLRTGDGEEITADQVVIAAG-SRPVIPPVIADSGVRYHTSDTIMRLPELPESL------V 170

Query: 212 VVGGGYIGMEVAA--AAVGWK-------------LDTTRYEQLYQQNGVKFVKGASIKNL 256
           +VGGG+I  E A   +A+G +             LD    E+  +    ++        +
Sbjct: 171 IVGGGFIAAEFAHVFSALGVRVTVVNRSGRLLRHLDDDISERFTELASKRWDVRLGRNVV 230

Query: 257 EAGSDGRVAAVKLEDGSTIDADTIVIGIGAKPTVSPF--ERVGLNSSVGG-IQVDGQFRT 313
               DG    ++L+DGST++AD +++  G  P          G++    G + VD   RT
Sbjct: 231 GVSQDGSGVTLRLDDGSTVEADVLLVATGRVPNGDLLDAAAAGVDVDEDGRVVVDEYQRT 290

Query: 314 RMPGIFAIGDVAA-FPLK-MYDRTAR-VEH---VDHARQSAQHC 351
              G+FA+GDV++ + LK + +  AR V+H         ++ H 
Sbjct: 291 SAEGVFALGDVSSPYQLKHVANHEARVVQHNLLHPDDLIASDHR 334

Length = 451

>gnl|CDD|180409 PRK06115, PRK06115, dihydrolipoamide dehydrogenase; Reviewed

 Score = 54.1 bits (130), Expect = 7e-08
 Identities = 47/172 (27%), Positives = 79/172 (45%), Gaps = 30/172 (17%)

Query: 185 LPGVHYI-RDVADADALISSLEKAKKVVVVGGGYIGMEVAAAAVGWK------------- 230
           LPGV    + + D+   +S  E  K +VV+G G IG+E+ +    W+             
Sbjct: 151 LPGVTIDNQRIIDSTGALSLPEVPKHLVVIGAGVIGLELGSV---WRRLGAQVTVVEYLD 207

Query: 231 -----LDT---TRYEQLYQQNGVKFVKGASIKNLEAGSDGRVAAVKLEDG---STIDADT 279
                 DT      ++   + G+KF  G+ +    AG+DG    ++   G    T+ AD 
Sbjct: 208 RICPGTDTETAKTLQKALTKQGMKFKLGSKVTGATAGADGVSLTLEPAAGGAAETLQADY 267

Query: 280 IVIGIGAKPTVS--PFERVGLNSSVGGIQVDGQFRTRMPGIFAIGDVAAFPL 329
           +++ IG +P       E VGL +   G+  +   RT +PG++ IGDV + P+
Sbjct: 268 VLVAIGRRPYTQGLGLETVGLETDKRGMLANDHHRTSVPGVWVIGDVTSGPM 319

Length = 466

>gnl|CDD|237213 PRK12810, gltD, glutamate synthase subunit beta; Reviewed

 Score = 53.6 bits (130), Expect = 1e-07
 Identities = 50/219 (22%), Positives = 76/219 (34%), Gaps = 58/219 (26%)

Query: 159 KLLK-YGSLIVATGCTASR---FPEKIGGYLPGVHY--------IRDVADADALISSLEK 206
           +LL  Y ++ + TG    R    P   G  L GVH+         R V   +       K
Sbjct: 224 ELLAEYDAVFLGTGAYKPRDLGIP---GRDLDGVHFAMDFLIQNTRRVLGDETEPFISAK 280

Query: 207 AKKVVVVGGGYIGMEVAAAAV------------------------GWKLDTTRYEQLY-Q 241
            K VVV+GGG  GM+    A+                         W     + E     
Sbjct: 281 GKHVVVIGGGDTGMDCVGTAIRQGAKSVTQRDIMPMPPSRRNKNNPWPYWPMKLEVSNAH 340

Query: 242 QNGVKFVKGASIKNLEAGSDGRVAAVKLED------------GS--TIDADTIVIGIGAK 287
           + GV+       K  E G +G+V  VK+              GS   + AD +++ +G  
Sbjct: 341 EEGVEREFNVQTKEFE-GENGKVTGVKVVRTELGEGDFEPVEGSEFVLPADLVLLAMGFT 399

Query: 288 PTVSP-FERVGLNSSVGG--IQVDGQFRTRMPGIFAIGD 323
              +    + G+     G     D  ++T  P +FA GD
Sbjct: 400 GPEAGLLAQFGVELDERGRVAAPDNAYQTSNPKVFAAGD 438

Length = 471

>gnl|CDD|233412 TIGR01438, TGR, thioredoxin and glutathione reductase selenoprotein

 Score = 52.2 bits (125), Expect = 4e-07
 Identities = 35/139 (25%), Positives = 58/139 (41%), Gaps = 22/139 (15%)

Query: 209 KVVVVGGGYIGMEVAAAAVGWKLDTT-----------------RYEQLYQQNGVKFVKGA 251
           K +VVG  Y+ +E A    G  LD T                 +  +  +++GVKF +  
Sbjct: 182 KTLVVGASYVALECAGFLAGIGLDVTVMVRSILLRGFDQDCANKVGEHMEEHGVKFKRQF 241

Query: 252 SIKNLEA-GSDGRVAAVKLEDGSTIDADTIVIGIGAKPTVSP--FERVGL--NSSVGGIQ 306
               +E   +   V      +G   + DT+++ IG          E VG+  N   G I 
Sbjct: 242 VPIKVEQIEAKVLVEFTDSTNGIEEEYDTVLLAIGRDACTRKLNLENVGVKINKKTGKIP 301

Query: 307 VDGQFRTRMPGIFAIGDVA 325
            D + +T +P I+A+GD+ 
Sbjct: 302 ADEEEQTNVPYIYAVGDIL 320

This homodimeric, FAD-containing member of the pyridine nucleotide disulfide oxidoreductase family contains a C-terminal motif Cys-SeCys-Gly, where SeCys is selenocysteine encoded by TGA (in some sequence reports interpreted as a stop codon). In some members of this subfamily, Cys-SeCys-Gly is replaced by Cys-Cys-Gly. The reach of the selenium atom at the C-term arm of the protein is proposed to allow broad substrate specificity. Length = 484

>gnl|CDD|215281 PLN02507, PLN02507, glutathione reductase

 Score = 51.0 bits (122), Expect = 8e-07
 Identities = 51/191 (26%), Positives = 82/191 (42%), Gaps = 36/191 (18%)

Query: 158 GKLLKYGS--LIVATGCTASRFPEKIGGYLPGVHYIRDVA-DADALISSLEKAKKVVVVG 214
           G  L+Y +  +++ATG  A R        +PG    +++A  +D  +S  E  K+ VV+G
Sbjct: 161 GTKLRYTAKHILIATGSRAQRPN------IPG----KELAITSDEALSLEELPKRAVVLG 210

Query: 215 GGYIGMEVAA--AAVGWKLDTTRYEQL----------------YQQNGVKFVKGASIKNL 256
           GGYI +E A+    +G  +D    ++L                 +  G+      ++  L
Sbjct: 211 GGYIAVEFASIWRGMGATVDLFFRKELPLRGFDDEMRAVVARNLEGRGINLHPRTNLTQL 270

Query: 257 EAGSDGRVAAVKLEDGSTIDADTIVIGIGAKPTVS--PFERVGLN-SSVGGIQVDGQFRT 313
                G    V  + G    AD ++   G  P       E VG+     G ++VD   RT
Sbjct: 271 TKTEGG--IKVITDHGEEFVADVVLFATGRAPNTKRLNLEAVGVELDKAGAVKVDEYSRT 328

Query: 314 RMPGIFAIGDV 324
            +P I+AIGDV
Sbjct: 329 NIPSIWAIGDV 339

Length = 499

>gnl|CDD|180743 PRK06912, acoL, dihydrolipoamide dehydrogenase; Validated

 Score = 50.1 bits (120), Expect = 2e-06
 Identities = 41/145 (28%), Positives = 63/145 (43%), Gaps = 24/145 (16%)

Query: 203 SLEK-AKKVVVVGGGYIGMEVAAAAVGWKLDTTRYEQLYQ------------------QN 243
           SL      +++VGGG IG E A+         T  E   Q                   +
Sbjct: 165 SLPSIPSSLLIVGGGVIGCEFASIYSRLGTKVTIVEMAPQLLPGEDEDIAHILREKLEND 224

Query: 244 GVKFVKGASIKNLEAGSDGRVAAVKLEDGS-TIDADTIVIGIGAKPTVSP--FERVGLNS 300
           GVK   GA++K L   S  + A  + E     ++A+ +++ +G KP V     E+ G+  
Sbjct: 225 GVKIFTGAALKGLN--SYKKQALFEYEGSIQEVNAEFVLVSVGRKPRVQQLNLEKAGVQF 282

Query: 301 SVGGIQVDGQFRTRMPGIFAIGDVA 325
           S  GI V+   +T +P I+A GDV 
Sbjct: 283 SNKGISVNEHMQTNVPHIYACGDVI 307

Length = 458

>gnl|CDD|132493 TIGR03452, mycothione_red, mycothione reductase

 Score = 49.8 bits (119), Expect = 2e-06
 Identities = 52/198 (26%), Positives = 86/198 (43%), Gaps = 26/198 (13%)

Query: 152 TLITNSGKLLKYGSLIVATGCTASRFPEKIGGYLPGVHYIRDVADADALISSLEKAKKVV 211
           TL T  G+ +    +++A G +    P  I     GV Y  +    + ++   E  + +V
Sbjct: 121 TLRTGDGEEITGDQIVIAAG-SRPYIPPAIAD--SGVRYHTN----EDIMRLPELPESLV 173

Query: 212 VVGGGYIGMEVAA--AAVGWK-------------LDTTRYEQLYQQNGVKFVKGASIKNL 256
           +VGGGYI  E A   +A+G +             LD    ++  +    K+         
Sbjct: 174 IVGGGYIAAEFAHVFSALGTRVTIVNRSTKLLRHLDEDISDRFTEIAKKKWDIRLGRNVT 233

Query: 257 EAGSDGRVAAVKLEDGSTIDADTIVIGIGAKPTVSPF--ERVGLNSSVGG-IQVDGQFRT 313
               DG    + L+DGST+ AD +++  G  P       E  G+     G I+VD   RT
Sbjct: 234 AVEQDGDGVTLTLDDGSTVTADVLLVATGRVPNGDLLDAEAAGVEVDEDGRIKVDEYGRT 293

Query: 314 RMPGIFAIGDVAA-FPLK 330
              G++A+GDV++ + LK
Sbjct: 294 SARGVWALGDVSSPYQLK 311

Mycothiol, a glutathione analog in Mycobacterium tuberculosis and related species, can form a disulfide-linked dimer called mycothione. This enzyme can reduce mycothione to regenerate two mycothiol molecules. The enzyme shows some sequence similarity to glutathione-disulfide reductase, trypanothione-disulfide reductase, and dihydrolipoamide dehydrogenase. The characterized protein from M. tuberculosis, a homodimer, has FAD as a cofactor, one per monomer, and uses NADPH as a substrate. Length = 452

>gnl|CDD|215301 PLN02546, PLN02546, glutathione reductase

 Score = 48.7 bits (116), Expect = 5e-06
 Identities = 51/189 (26%), Positives = 83/189 (43%), Gaps = 33/189 (17%)

Query: 158 GKLLKYGSLIVATGCTASRFPEKIGGYLPGVHYIRDVADADALISSLEKAKKVVVVGGGY 217
           GKL    ++++A G      P+     +PG+ +     D+DA +    K +K+ +VGGGY
Sbjct: 212 GKLYTARNILIAVGGRPF-IPD-----IPGIEH---AIDSDAALDLPSKPEKIAIVGGGY 262

Query: 218 IGMEVAAAAVGWKLDTTRY-------------------EQLYQQNGVKFVKGASIKNLEA 258
           I +E A    G K D   +                   EQ+    G++F    S + +  
Sbjct: 263 IALEFAGIFNGLKSDVHVFIRQKKVLRGFDEEVRDFVAEQM-SLRGIEFHTEESPQAIIK 321

Query: 259 GSDGRVAAVKLEDGSTIDADTIVIGIGAKPTVSP--FERVGLN-SSVGGIQVDGQFRTRM 315
            +DG + ++K   G+      ++   G KP       E VG+     G I+VD   RT +
Sbjct: 322 SADGSL-SLKTNKGTVEGFSHVMFATGRKPNTKNLGLEEVGVKMDKNGAIEVDEYSRTSV 380

Query: 316 PGIFAIGDV 324
           P I+A+GDV
Sbjct: 381 PSIWAVGDV 389

Length = 558

>gnl|CDD|181196 PRK08010, PRK08010, pyridine nucleotide-disulfide oxidoreductase; Provisional

 Score = 48.5 bits (115), Expect = 5e-06
 Identities = 37/161 (22%), Positives = 64/161 (39%), Gaps = 24/161 (14%)

Query: 185 LPGVHYIRDVADADALISSLEKAKKVVVVGGGYIGMEVAAAAVGWKLDTTRYE------- 237
           +PG+     V D+  L++  E    + ++GGGYIG+E A+    +    T  E       
Sbjct: 136 IPGITTTPGVYDSTGLLNLKELPGHLGILGGGYIGVEFASMFANFGSKVTILEAASLFLP 195

Query: 238 -----------QLYQQNGVKFVKGASIKNLEAGSDGRVAAVKLEDGSTIDADTIVIGIGA 286
                       + +  GV  +  A ++ + +  + +V  V  E       D ++I  G 
Sbjct: 196 REDRDIADNIATILRDQGVDIILNAHVERI-SHHENQV-QVHSEHAQLA-VDALLIASGR 252

Query: 287 KPTVSPFERVGLNSSV---GGIQVDGQFRTRMPGIFAIGDV 324
           +P  +         +V   G I VD    T    I+A+GDV
Sbjct: 253 QPATASLHPENAGIAVNERGAIVVDKYLHTTADNIWAMGDV 293

Length = 441

>gnl|CDD|185553 PTZ00318, PTZ00318, NADH dehydrogenase-like protein; Provisional

 Score = 47.5 bits (113), Expect = 9e-06
 Identities = 59/264 (22%), Positives = 94/264 (35%), Gaps = 76/264 (28%)

Query: 139 YQDPVTSIDIE-KQTLITNSGK---------LLKYGSLIVATGCTASRFPEKIGGYLPGV 188
            +  V  +D E K+       K          + Y  L+VA G   + F   I G     
Sbjct: 80  LRAVVYDVDFEEKRVKCGVVSKSNNANVNTFSVPYDKLVVAHGARPNTF--NIPGVEERA 137

Query: 189 HYIRDVADADAL--------------ISSLEKAKK---VVVVGGGYIGMEVAA------- 224
            ++++V  A  +               +S+E+ K+    VVVGGG  G+E AA       
Sbjct: 138 FFLKEVNHARGIRKRIVQCIERASLPTTSVEERKRLLHFVVVGGGPTGVEFAAELADFFR 197

Query: 225 ----------------------AAVGWKLDTT--RYEQL-YQQNGVKFVKGASIKNLEAG 259
                                 + V    D    +Y Q   ++ GV      ++K +   
Sbjct: 198 DDVRNLNPELVEECKVTVLEAGSEVLGSFDQALRKYGQRRLRRLGVDIRTKTAVKEVLDK 257

Query: 260 SDGRVAAVKLEDGSTIDADTIV--IGIGAKPTV--SPFERVGLNSSVGGIQVDGQFRTR- 314
                  V L+DG  I    +V   G+G  P       ++    +S G I VD   R + 
Sbjct: 258 E------VVLKDGEVIPTGLVVWSTGVGPGPLTKQLKVDK----TSRGRISVDDHLRVKP 307

Query: 315 MPGIFAIGDVAAFPLKMYDRTARV 338
           +P +FA+GD AA   +     A+V
Sbjct: 308 IPNVFALGDCAANEERPLPTLAQV 331

Length = 424

>gnl|CDD|226160 COG3634, AhpF, Alkyl hydroperoxide reductase, large subunit [Posttranslational modification, protein turnover, chaperones]

 Score = 47.4 bits (113), Expect = 1e-05
 Identities = 49/194 (25%), Positives = 80/194 (41%), Gaps = 27/194 (13%)

Query: 157 SGKLLKYGSLIVATGCTASRFPEKIGGYLPGVHYIRD--VADADALISSLEKAKKVVVVG 214
           +G +LK  ++I+ATG   +R+   +   +PG    R+  VA        L K K+V V+G
Sbjct: 308 NGAVLKARTVILATG---ARW-RNMN--VPGEDEYRNKGVAYCPHCDGPLFKGKRVAVIG 361

Query: 215 GGYIGMEVAAAAVG-------------WKLDTTRYEQLYQQNGVKFVKGASIKNLEAGSD 261
           GG  G+E A    G              K D    ++L     V  +  A    +  G  
Sbjct: 362 GGNSGVEAAIDLAGIVEHVTLLEFAPELKADAVLQDKLRSLPNVTIITNAQTTEV-KGDG 420

Query: 262 GRVAAVKLEDGST-----IDADTIVIGIGAKPTVSPFERVGLNSSVGGIQVDGQFRTRMP 316
            +V  ++  D  +     ++ + + + IG  P     +     +  G I VD +  T +P
Sbjct: 421 DKVTGLEYRDRVSGEEHHLELEGVFVQIGLLPNTEWLKGAVELNRRGEIIVDARGETNVP 480

Query: 317 GIFAIGDVAAFPLK 330
           G+FA GD    P K
Sbjct: 481 GVFAAGDCTTVPYK 494

Length = 520

>gnl|CDD|236112 PRK07845, PRK07845, flavoprotein disulfide reductase; Reviewed

 Score = 46.4 bits (111), Expect = 2e-05
 Identities = 42/143 (29%), Positives = 69/143 (48%), Gaps = 24/143 (16%)

Query: 209 KVVVVGGGYIGMEVAAA--AVGWK--LDTTR--------------YEQLYQQNGVKFVKG 250
            ++VVG G  G E A+A   +G K  L ++R               E+++ + G+  +K 
Sbjct: 179 HLIVVGSGVTGAEFASAYTELGVKVTLVSSRDRVLPGEDADAAEVLEEVFARRGMTVLKR 238

Query: 251 ASIKNLEAGSDGRVAAVKLEDGSTIDADTIVIGIGAKPTVSP--FERVGLNSSVGG-IQV 307
           +  +++E   DG V  V L DG T++    ++ +G+ P  +    E  G+  +  G I V
Sbjct: 239 SRAESVERTGDGVV--VTLTDGRTVEGSHALMAVGSVPNTAGLGLEEAGVELTPSGHITV 296

Query: 308 DGQFRTRMPGIFAIGDVAA-FPL 329
           D   RT +PGI+A GD     PL
Sbjct: 297 DRVSRTSVPGIYAAGDCTGVLPL 319

Length = 466

>gnl|CDD|236630 PRK09853, PRK09853, putative selenate reductase subunit YgfK; Provisional

 Score = 46.9 bits (112), Expect = 2e-05
 Identities = 36/150 (24%), Positives = 63/150 (42%), Gaps = 35/150 (23%)

Query: 208 KKVVVVGGGYIGMEVAAAAVGWKLD-----------TTRY-----EQLYQ--QNGVKFVK 249
           K VVVVGGG   M+ A AA+  ++            T +      E+  +  ++GV+F +
Sbjct: 669 KHVVVVGGGNTAMDAARAAL--RVPGVEKVTVVYRRTKQEMPAWREEYEEALEDGVEFKE 726

Query: 250 GASIKNLEA--------------GSDGRVAAVKLEDGSTIDADTIVIGIGAKPTVSPFER 295
             + ++ +A                 GR   V+  +  T++ADT++  IG +      + 
Sbjct: 727 LLNPESFDADGTLTCRVMKLGEPDESGRRRPVETGETVTLEADTVITAIGEQVDTELLKA 786

Query: 296 VGLNSSVGG-IQVDGQFRTRMPGIFAIGDV 324
            G+     G   VD    T +  ++ IGDV
Sbjct: 787 NGIPLDKKGWPVVDANGETSLTNVYMIGDV 816

Length = 1019

>gnl|CDD|139246 PRK12814, PRK12814, putative NADPH-dependent glutamate synthase small subunit; Provisional

 Score = 45.9 bits (109), Expect = 3e-05
 Identities = 47/182 (25%), Positives = 81/182 (44%), Gaps = 43/182 (23%)

Query: 179 EKIGGYLPGVHYIRDVADADALISSLEKAKKVVVVGGGYIGMEVAAAAVGWKLDTTRYEQ 238
           E++ G + G+ ++R+VA   AL       KKVVV+GGG   ++ A  A+  +L       
Sbjct: 299 EELPGVISGIDFLRNVALGTAL----HPGKKVVVIGGGNTAIDAARTAL--RLGAESVTI 352

Query: 239 LYQQN-----------------GVKFVKGASIKNLEAGSDG-RVAAVKLEDGS------- 273
           LY++                  GV   + A+  ++E    G  + A+K++ G        
Sbjct: 353 LYRRTREEMPANRAEIEEALAEGVSLRELAAPVSIERSEGGLELTAIKMQQGEPDESGRR 412

Query: 274 ----------TIDADTIVIGIGAKPTVSPFERVGLNSSVGG-IQVDGQ-FRTRMPGIFAI 321
                     T+ ADT++  IG +      E  G+ +S  G ++VD +  +T + G+FA 
Sbjct: 413 RPVPVEGSEFTLQADTVISAIGQQVDPPIAEAAGIGTSRNGTVKVDPETLQTSVAGVFAG 472

Query: 322 GD 323
           GD
Sbjct: 473 GD 474

Length = 652

>gnl|CDD|237200 PRK12778, PRK12778, putative bifunctional 2-polyprenylphenol hydroxylase/glutamate synthase subunit beta; Provisional

 Score = 45.5 bits (108), Expect = 4e-05
 Identities = 42/157 (26%), Positives = 67/157 (42%), Gaps = 41/157 (26%)

Query: 207 AKKVVVVGGGYIGMEVAAAAVGWKLDT-------------TRYEQLY--QQNGVKF---- 247
            KKV VVGGG   M+ A  A     +               R E++   ++ G++F    
Sbjct: 570 GKKVAVVGGGNTAMDSARTAKRLGAERVTIVYRRSEEEMPARLEEVKHAKEEGIEFLTLH 629

Query: 248 ------------VKGASIKNLEAG---SDGRVAAVKLEDGS--TIDADTIVIGIGAKPT- 289
                       VK   ++ +E G   + GR   V +  GS  T+D D +++ +G  P  
Sbjct: 630 NPIEYLADEKGWVKQVVLQKMELGEPDASGRRRPVAIP-GSTFTVDVDLVIVSVGVSPNP 688

Query: 290 --VSPFERVGLNSSVGGIQVDGQFRTRMPGIFAIGDV 324
              S    + LN   G I VD + ++ +PGI+A GD+
Sbjct: 689 LVPSSIPGLELNRK-GTIVVDEEMQSSIPGIYAGGDI 724

Length = 752

>gnl|CDD|180579 PRK06467, PRK06467, dihydrolipoamide dehydrogenase; Reviewed

 Score = 43.4 bits (103), Expect = 2e-04
 Identities = 40/148 (27%), Positives = 64/148 (43%), Gaps = 30/148 (20%)

Query: 208 KKVVVVGGGYIGMEVAA--AAVGWKLDTTRYEQLYQ----------QNGVKFVK------ 249
           K+++V+GGG IG+E+      +G ++D    E   Q          +   K +K      
Sbjct: 175 KRLLVMGGGIIGLEMGTVYHRLGSEVDV--VEMFDQVIPAADKDIVKVFTKRIKKQFNIM 232

Query: 250 -GASIKNLEAGSDGRVAAVKLEDGSTIDA----DTIVIGIGAKPTVSPF--ERVGLN-SS 301
               +  +EA  DG    V +E           D +++ +G  P       E+ G+    
Sbjct: 233 LETKVTAVEAKEDGIY--VTMEGKKAPAEPQRYDAVLVAVGRVPNGKLLDAEKAGVEVDE 290

Query: 302 VGGIQVDGQFRTRMPGIFAIGDVAAFPL 329
            G I+VD Q RT +P IFAIGD+   P+
Sbjct: 291 RGFIRVDKQCRTNVPHIFAIGDIVGQPM 318

Length = 471

>gnl|CDD|223567 COG0493, GltD, NADPH-dependent glutamate synthase beta chain and related oxidoreductases [Amino acid transport and metabolism / General function prediction only]

 Score = 42.3 bits (100), Expect = 4e-04
 Identities = 58/257 (22%), Positives = 88/257 (34%), Gaps = 61/257 (23%)

Query: 160 LLKYGSLIVATGCTASRFPEKIGGYLPGVHYIRD--------VADADALISSLE-KAKKV 210
           L +Y ++ +ATG    R  +  G    GV +  D        V    A   +   K K+V
Sbjct: 206 LKEYDAVFLATGAGKPRPLDIPGEDAKGVAFALDFLTRLNKEVLGDFAEDRTPPAKGKRV 265

Query: 211 VVVGGGYIGMEVAAAAV--------------------GWKLDTTRYEQLY-QQNGVKFVK 249
           VV+GGG   M+ A  A+                     W     + E     + GV+ + 
Sbjct: 266 VVIGGGDTAMDCAGTALRLGAKSVTCFYREDRDDETNEWPTWAAQLEVRSAGEEGVERLP 325

Query: 250 GASIKNLEAGSDGRVAAVKLED-------------------GST--IDADTIVIGIGAKP 288
               K       GRV  VK                      G+     ADT+++ IG + 
Sbjct: 326 FVQPKAFIGNEGGRVTGVKFGRVEPGEYVDGWGRRGPVGVIGTEKTDAADTVILAIGFEG 385

Query: 289 TVSPF--ERVGLNSSVGG-IQVDGQF-RTRMPGIFAIGDVAAFPLKMYDRTARVEHVDHA 344
             +       GL     G I+VD    +T +PG+FA GD              V  +   
Sbjct: 386 DATDGLLLEFGLKLDKRGRIKVDENLQQTSIPGVFAGGDAVR-----GAAL-VVWAIAEG 439

Query: 345 RQSAQHCIKALLSAQTH 361
           R++A+   K LL  +  
Sbjct: 440 REAAKAIDKELLLGKAV 456

Length = 457

>gnl|CDD|237790 PRK14694, PRK14694, putative mercuric reductase; Provisional

 Score = 42.2 bits (99), Expect = 4e-04
 Identities = 29/144 (20%), Positives = 62/144 (43%), Gaps = 22/144 (15%)

Query: 208 KKVVVVGGGYIGMEVAAAAVGWKLDTT-----------------RYEQLYQQNGVKFVKG 250
           ++++V+G   + +E+A A        T                   E  +++ G++ +K 
Sbjct: 179 ERLLVIGASVVALELAQAFARLGSRVTVLARSRVLSQEDPAVGEAIEAAFRREGIEVLKQ 238

Query: 251 ASIKNLEAGSDGRVAAVKLEDGSTIDADTIVIGIGAKPTVSPF--ERVGLNSSVGGIQVD 308
                ++   +GR   ++   G T+ A+ +++  G  P       E +G+ +  G I++D
Sbjct: 239 TQASEVD--YNGREFILETNAG-TLRAEQLLVATGRTPNTENLNLESIGVETERGAIRID 295

Query: 309 GQFRTRMPGIFAIGDVAAFPLKMY 332
              +T + GI+A GD    P  +Y
Sbjct: 296 EHLQTTVSGIYAAGDCTDQPQFVY 319

Length = 468

>gnl|CDD|222355 pfam13738, Pyr_redox_3, Pyridine nucleotide-disulphide oxidoreductase

 Score = 41.1 bits (97), Expect = 5e-04
 Identities = 45/204 (22%), Positives = 76/204 (37%), Gaps = 35/204 (17%)

Query: 55  VIVGGGNAAG-YAARTFVEHGMADGRLCIVSKEA--------YAPYER---PALTKGYLF 102
           ++VG G AAG   A   ++ G A   + IV + A        + P+ R   P+   G   
Sbjct: 1   LVVGAG-AAGMAFADHLLDLGDAP--VIIVDRGAQPGGHWRKWYPFVRLHQPSFFYGDFG 57

Query: 103 P-------LDKKPARLPGFHTCVGSGGERQTP-EWY-KEKGIEMIYQDPVTSIDIEK--Q 151
                   +D  P           SG E     E   +  G+ +     VT+++ +    
Sbjct: 58  MPDLNALSIDTSPKWDGKAELA--SGAEIAAYLEDLARRYGLPIRLSTRVTAVERDGGRF 115

Query: 152 TLITNSGKLLKYGSLIVATGCTASRFPEKI-GGYLPGVHYIRDVADADALISSLEKAKKV 210
            +    G+ ++   ++ ATG  +   P    G    GVH +  +   D       K K V
Sbjct: 116 VVRLTDGETVRADYVVDATGAFSVPKPPGFPGADAEGVHLVDVLERID------LKGKTV 169

Query: 211 VVVGGGYIGMEVAAAAVGWKLDTT 234
            V+GGG+  ++ A   +    D T
Sbjct: 170 AVIGGGHTAIDAALNLLDLGKDVT 193

Length = 202

>gnl|CDD|132358 TIGR03315, Se_ygfK, putative selenate reductase, YgfK subunit

 Score = 42.1 bits (99), Expect = 7e-04
 Identities = 50/208 (24%), Positives = 80/208 (38%), Gaps = 44/208 (21%)

Query: 208 KKVVVVGGGYIGMEVAAAAV---GWKLDTTRY-----------EQLY--QQNGVKFVKGA 251
           K VVVVGGG   M+ A AA+   G +  T  Y           E+L    ++GV F +  
Sbjct: 667 KHVVVVGGGNTAMDAARAALRVPGVEKVTVVYRRTKRYMPASREELEEALEDGVDFKELL 726

Query: 252 SIKNLEAG-------------SDGRVAAVKLEDGSTIDADTIVIGIGAKPTVSPFERVGL 298
           S ++ E G             + GR   V   +   + ADT++  +G +      ++ G+
Sbjct: 727 SPESFEDGTLTCEVMKLGEPDASGRRRPVGTGETVDLPADTVIAAVGEQVDTDLLQKNGI 786

Query: 299 NSSVGG-IQVDGQFR-TRMPGIFAIGDVAAFPLKMYDRTARVEHVDHARQSAQHCIKALL 356
                G   V+     T +  +F IGD    P  +      VE +   R++A     A+L
Sbjct: 787 PLDEYGWPVVNQATGETNITNVFVIGDANRGPATI------VEAIADGRKAA----NAIL 836

Query: 357 SAQTHTYDYLPYFYSRVFEYEGSPRKVW 384
           S +    D    F       E    +V+
Sbjct: 837 SREGLNSDVDKVF---PINEEVRLAEVY 861

Members of this protein family are YgfK, predicted to be one subunit of a three-subunit, molybdopterin-containing selenate reductase. This enzyme is found, typically, in genomic regions associated with xanthine dehydrogenase homologs predicted to belong to the selenium-dependent molybdenum hydroxylases (SDMH). Therefore, the selenate reductase is suggested to play a role in furnishing selenide for SelD, the selenophosphate synthase. Length = 1012

>gnl|CDD|237942 PRK15317, PRK15317, alkyl hydroperoxide reductase subunit F; Provisional

 Score = 41.7 bits (99), Expect = 7e-04
 Identities = 40/144 (27%), Positives = 59/144 (40%), Gaps = 21/144 (14%)

Query: 206 KAKKVVVVGGGYIGMEVA---AAAVG----------WKLDTTRYEQLYQQNGVKFVKGAS 252
           K K+V V+GGG  G+E A   A  V            K D    ++L     V  +  A 
Sbjct: 350 KGKRVAVIGGGNSGVEAAIDLAGIVKHVTVLEFAPELKADQVLQDKLRSLPNVTIITNAQ 409

Query: 253 IKNLEAGSDGRVAAVKLEDGST-----IDADTIVIGIGAKPTVSPF-ERVGLNSSVGGIQ 306
              +  G   +V  +  +D +T     ++ + + + IG  P        V LN   G I 
Sbjct: 410 TTEVT-GDGDKVTGLTYKDRTTGEEHHLELEGVFVQIGLVPNTEWLKGTVELNRR-GEII 467

Query: 307 VDGQFRTRMPGIFAIGDVAAFPLK 330
           VD +  T +PG+FA GD    P K
Sbjct: 468 VDARGATSVPGVFAAGDCTTVPYK 491

Length = 517

>gnl|CDD|219686 pfam07992, Pyr_redox_2, Pyridine nucleotide-disulphide oxidoreductase

 Score = 39.7 bits (93), Expect = 0.002
 Identities = 24/124 (19%), Positives = 43/124 (34%), Gaps = 35/124 (28%)

Query: 209 KVVVVGGGYIGMEVAAAAVGWKLDTTRYE------------------------------- 237
            VV++GGG  G+  A       L     E                               
Sbjct: 1   DVVIIGGGPAGLAAAIRLARLGLKVALIEREGGTCYNRGCLPKKLLLEVAEGLELAIGLA 60

Query: 238 ---QLYQQNGVKFVKGASIKNLEAGSDGRVAAVKLEDGSTIDADTIVIGIGAKPTVSPFE 294
              ++Y++ GV+ + G  + +++ G    V    +E G  I  D ++I  GA+P +    
Sbjct: 61  LPEEVYKEFGVEVLLGTEVVDIDRGE-KTVVLKDVETGREITYDKLIIATGARPRIPGIP 119

Query: 295 RVGL 298
            V +
Sbjct: 120 GVEV 123

This family includes both class I and class II oxidoreductases and also NADH oxidases and peroxidases. This domain is actually a small NADH binding domain within a larger FAD binding domain. Length = 283

>gnl|CDD|183780 PRK12831, PRK12831, putative oxidoreductase; Provisional

 Score = 39.6 bits (93), Expect = 0.003
 Identities = 36/154 (23%), Positives = 60/154 (38%), Gaps = 39/154 (25%)

Query: 208 KKVVVVGGGYIGMEVAAAAV------------GWKLDTTRYEQLY--QQNGVKFVKGASI 253
           KKV VVGGG + M+ A  A+              +    R E+++  ++ GV F    + 
Sbjct: 282 KKVAVVGGGNVAMDAARTALRLGAEVHIVYRRSEEELPARVEEVHHAKEEGVIFDLLTNP 341

Query: 254 KNLEAGSDGRVAAVKLE-------DGS-------------TIDADTIVIGIGAKPT---V 290
             +    +G V  +K         D S              ++ DT+++ +G  P     
Sbjct: 342 VEILGDENGWVKGMKCIKMELGEPDASGRRRPVEIEGSEFVLEVDTVIMSLGTSPNPLIS 401

Query: 291 SPFERVGLNSSVGGIQVDGQF-RTRMPGIFAIGD 323
           S  + + +N   G I  D +   T   G+FA GD
Sbjct: 402 STTKGLKINKR-GCIVADEETGLTSKEGVFAGGD 434

Length = 464

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	469
PRK09754	396	phenylpropionate dioxygenase ferredoxin reductase	100.0
KOG1336	478	consensus Monodehydroascorbate/ferredoxin reductas	100.0
PRK14989	847	nitrite reductase subunit NirD; Provisional	100.0
TIGR02374	785	nitri_red_nirB nitrite reductase [NAD(P)H], large	100.0
PRK04965	377	NADH:flavorubredoxin oxidoreductase; Provisional	100.0
COG1251	793	NirB NAD(P)H-nitrite reductase [Energy production	100.0
PRK13512	438	coenzyme A disulfide reductase; Provisional	100.0
PRK09564	444	coenzyme A disulfide reductase; Reviewed	100.0
COG1249	454	Lpd Pyruvate/2-oxoglutarate dehydrogenase complex,	100.0
PRK06370	463	mercuric reductase; Validated	100.0
PRK09853	1019	putative selenate reductase subunit YgfK; Provisio	100.0
PRK05249	461	soluble pyridine nucleotide transhydrogenase; Prov	100.0
PRK14694	468	putative mercuric reductase; Provisional	100.0
PRK12831	464	putative oxidoreductase; Provisional	100.0
PRK06116	450	glutathione reductase; Validated	100.0
TIGR01316	449	gltA glutamate synthase (NADPH), homotetrameric. T	100.0
PLN02507	499	glutathione reductase	100.0
TIGR01424	446	gluta_reduc_2 glutathione-disulfide reductase, pla	100.0
TIGR01421	450	gluta_reduc_1 glutathione-disulfide reductase, ani	100.0
PRK06467	471	dihydrolipoamide dehydrogenase; Reviewed	100.0
PRK06416	462	dihydrolipoamide dehydrogenase; Reviewed	100.0
PRK06115	466	dihydrolipoamide dehydrogenase; Reviewed	100.0
COG1252	405	Ndh NADH dehydrogenase, FAD-containing subunit [En	100.0
PRK08010	441	pyridine nucleotide-disulfide oxidoreductase; Prov	100.0
PRK05976	472	dihydrolipoamide dehydrogenase; Validated	100.0
PRK07845	466	flavoprotein disulfide reductase; Reviewed	100.0
PTZ00058	561	glutathione reductase; Provisional	100.0
PLN02546	558	glutathione reductase	100.0
PRK07818	466	dihydrolipoamide dehydrogenase; Reviewed	100.0
TIGR02053	463	MerA mercuric reductase. This model represents the	100.0
PRK13748	561	putative mercuric reductase; Provisional	100.0
KOG1346	659	consensus Programmed cell death 8 (apoptosis-induc	100.0
PRK07846	451	mycothione reductase; Reviewed	100.0
PRK14727	479	putative mercuric reductase; Provisional	100.0
PRK12779	944	putative bifunctional glutamate synthase subunit b	100.0
PRK07251	438	pyridine nucleotide-disulfide oxidoreductase; Prov	100.0
TIGR01423	486	trypano_reduc trypanothione-disulfide reductase. T	100.0
PTZ00318	424	NADH dehydrogenase-like protein; Provisional	100.0
PRK11749	457	dihydropyrimidine dehydrogenase subunit A; Provisi	100.0
PRK12810	471	gltD glutamate synthase subunit beta; Reviewed	100.0
TIGR03385	427	CoA_CoA_reduc CoA-disulfide reductase. Members of	100.0
PRK06912	458	acoL dihydrolipoamide dehydrogenase; Validated	100.0
TIGR01438	484	TGR thioredoxin and glutathione reductase selenopr	100.0
TIGR01350	461	lipoamide_DH dihydrolipoamide dehydrogenase. The m	100.0
TIGR03452	452	mycothione_red mycothione reductase. Mycothiol, a	100.0
PRK12778	752	putative bifunctional 2-polyprenylphenol hydroxyla	100.0
TIGR03315	1012	Se_ygfK putative selenate reductase, YgfK subunit.	100.0
PRK06292	460	dihydrolipoamide dehydrogenase; Validated	100.0
PRK06327	475	dihydrolipoamide dehydrogenase; Validated	100.0
PTZ00153	659	lipoamide dehydrogenase; Provisional	100.0
PRK12775	1006	putative trifunctional 2-polyprenylphenol hydroxyl	100.0
TIGR01318	467	gltD_gamma_fam glutamate synthase small subunit fa	100.0
PTZ00052	499	thioredoxin reductase; Provisional	100.0
PRK12814	652	putative NADPH-dependent glutamate synthase small	100.0
TIGR03169	364	Nterm_to_SelD pyridine nucleotide-disulfide oxidor	100.0
PRK12769	654	putative oxidoreductase Fe-S binding subunit; Revi	100.0
KOG1335	506	consensus Dihydrolipoamide dehydrogenase [Energy p	100.0
PRK13984	604	putative oxidoreductase; Provisional	100.0
TIGR01317	485	GOGAT_sm_gam glutamate synthases, NADH/NADPH, smal	100.0
PRK12809	639	putative oxidoreductase Fe-S binding subunit; Revi	100.0
TIGR01292	300	TRX_reduct thioredoxin-disulfide reductase. This m	100.0
PRK12771	564	putative glutamate synthase (NADPH) small subunit;	100.0
TIGR03140	515	AhpF alkyl hydroperoxide reductase, F subunit. Thi	100.0
KOG0405	478	consensus Pyridine nucleotide-disulphide oxidoredu	100.0
PRK10262	321	thioredoxin reductase; Provisional	100.0
PRK15317	517	alkyl hydroperoxide reductase subunit F; Provision	100.0
COG0492	305	TrxB Thioredoxin reductase [Posttranslational modi	100.0
TIGR03143	555	AhpF_homolog putative alkyl hydroperoxide reductas	100.0
COG0446	415	HcaD Uncharacterized NAD(FAD)-dependent dehydrogen	99.97
PRK12770	352	putative glutamate synthase subunit beta; Provisio	99.97
KOG2495	491	consensus NADH-dehydrogenase (ubiquinone) [Energy	99.96
PRK06567	1028	putative bifunctional glutamate synthase subunit b	99.95
PLN02852	491	ferredoxin-NADP+ reductase	99.95
TIGR01372	985	soxA sarcosine oxidase, alpha subunit family, hete	99.95
COG0493	457	GltD NADPH-dependent glutamate synthase beta chain	99.94
KOG0399	2142	consensus Glutamate synthase [Amino acid transport	99.94
KOG4716	503	consensus Thioredoxin reductase [Posttranslational	99.93
COG3634	520	AhpF Alkyl hydroperoxide reductase, large subunit	99.93
KOG0404	322	consensus Thioredoxin reductase [Posttranslational	99.92
PLN02172	461	flavin-containing monooxygenase FMO GS-OX	99.91
KOG3851	446	consensus Sulfide:quinone oxidoreductase/flavo-bin	99.87
PF07992	201	Pyr_redox_2: Pyridine nucleotide-disulphide oxidor	99.85
KOG2755	334	consensus Oxidoreductase [General function predict	99.84
PF00743	531	FMO-like: Flavin-binding monooxygenase-like; Inter	99.84
COG1148	622	HdrA Heterodisulfide reductase, subunit A and rela	99.71
COG2072	443	TrkA Predicted flavoprotein involved in K+ transpo	99.67
PF13738	203	Pyr_redox_3: Pyridine nucleotide-disulphide oxidor	99.66
PF13434	341	K_oxygenase: L-lysine 6-monooxygenase (NADPH-requi	99.65
KOG1800	468	consensus Ferredoxin/adrenodoxin reductase [Nucleo	99.63
COG3486	436	IucD Lysine/ornithine N-monooxygenase [Secondary m	99.62
KOG1399	448	consensus Flavin-containing monooxygenase [Seconda	99.62
PTZ00188	506	adrenodoxin reductase; Provisional	99.61
COG4529	474	Uncharacterized protein conserved in bacteria [Fun	99.5
PRK05329	422	anaerobic glycerol-3-phosphate dehydrogenase subun	99.47
PRK09897	534	hypothetical protein; Provisional	99.31
COG2081	408	Predicted flavoproteins [General function predicti	99.15
TIGR03378	419	glycerol3P_GlpB glycerol-3-phosphate dehydrogenase	98.97
PF14759	85	Reductase_C: Reductase C-terminal; PDB: 3FG2_P 3LX	98.94
PF00070	80	Pyr_redox: Pyridine nucleotide-disulphide oxidored	98.93
COG0579	429	Predicted dehydrogenase [General function predicti	98.9
PF03486	409	HI0933_like: HI0933-like protein; InterPro: IPR004	98.88
PRK06847	375	hypothetical protein; Provisional	98.78
COG0029	518	NadB Aspartate oxidase [Coenzyme metabolism]	98.78
COG3075	421	GlpB Anaerobic glycerol-3-phosphate dehydrogenase	98.75
PLN02463	447	lycopene beta cyclase	98.71
TIGR02032	295	GG-red-SF geranylgeranyl reductase family. This mo	98.7
PRK06834	488	hypothetical protein; Provisional	98.69
TIGR00551	488	nadB L-aspartate oxidase. L-aspartate oxidase is t	98.68
COG0644	396	FixC Dehydrogenases (flavoproteins) [Energy produc	98.68
PRK10015	429	oxidoreductase; Provisional	98.67
PRK10157	428	putative oxidoreductase FixC; Provisional	98.66
PRK07190	487	hypothetical protein; Provisional	98.64
PRK04176	257	ribulose-1,5-biphosphate synthetase; Provisional	98.62
PF13454	156	NAD_binding_9: FAD-NAD(P)-binding	98.6
PRK06184	502	hypothetical protein; Provisional	98.6
PF01266	358	DAO: FAD dependent oxidoreductase; InterPro: IPR00	98.59
PRK08773	392	2-octaprenyl-3-methyl-6-methoxy-1,4-benzoquinol hy	98.58
TIGR00292	254	thiazole biosynthesis enzyme. This enzyme is invol	98.57
PRK07333	403	2-octaprenyl-6-methoxyphenyl hydroxylase; Provisio	98.57
PRK12842	574	putative succinate dehydrogenase; Reviewed	98.56
PRK08071	510	L-aspartate oxidase; Provisional	98.54
TIGR01790	388	carotene-cycl lycopene cyclase family protein. Thi	98.52
PRK09077	536	L-aspartate oxidase; Provisional	98.51
PRK09126	392	hypothetical protein; Provisional	98.5
PRK07045	388	putative monooxygenase; Reviewed	98.5
PRK08020	391	ubiF 2-octaprenyl-3-methyl-6-methoxy-1,4-benzoquin	98.49
PRK07236	386	hypothetical protein; Provisional	98.49
PRK07494	388	2-octaprenyl-6-methoxyphenyl hydroxylase; Provisio	98.49
COG0654	387	UbiH 2-polyprenyl-6-methoxyphenol hydroxylase and	98.48
PRK13977	576	myosin-cross-reactive antigen; Provisional	98.48
TIGR03385	427	CoA_CoA_reduc CoA-disulfide reductase. Members of	98.47
PRK08244	493	hypothetical protein; Provisional	98.47
PRK07251	438	pyridine nucleotide-disulfide oxidoreductase; Prov	98.46
PF00070	80	Pyr_redox: Pyridine nucleotide-disulphide oxidored	98.46
PLN02697	529	lycopene epsilon cyclase	98.44
KOG2415	621	consensus Electron transfer flavoprotein ubiquinon	98.44
PRK07608	388	ubiquinone biosynthesis hydroxylase family protein	98.43
PRK11728	393	hydroxyglutarate oxidase; Provisional	98.41
PRK08849	384	2-octaprenyl-3-methyl-6-methoxy-1,4-benzoquinol hy	98.41
PRK05714	405	2-octaprenyl-3-methyl-6-methoxy-1,4-benzoquinol hy	98.41
PRK08013	400	oxidoreductase; Provisional	98.4
PF04820	454	Trp_halogenase: Tryptophan halogenase; InterPro: I	98.39
PRK05868	372	hypothetical protein; Validated	98.38
PF05834	374	Lycopene_cycl: Lycopene cyclase protein; InterPro:	98.38
PRK08163	396	salicylate hydroxylase; Provisional	98.38
PRK06912	458	acoL dihydrolipoamide dehydrogenase; Validated	98.37
PRK06126	545	hypothetical protein; Provisional	98.36
PRK04965	377	NADH:flavorubredoxin oxidoreductase; Provisional	98.36
PRK07512	513	L-aspartate oxidase; Provisional	98.36
PRK06183	538	mhpA 3-(3-hydroxyphenyl)propionate hydroxylase; Va	98.35
TIGR01350	461	lipoamide_DH dihydrolipoamide dehydrogenase. The m	98.35
PRK09754	396	phenylpropionate dioxygenase ferredoxin reductase	98.35
COG2081	408	Predicted flavoproteins [General function predicti	98.35
PRK07364	415	2-octaprenyl-6-methoxyphenyl hydroxylase; Validate	98.34
PRK06416	462	dihydrolipoamide dehydrogenase; Reviewed	98.34
PRK05192	618	tRNA uridine 5-carboxymethylaminomethyl modificati	98.33
PRK05976	472	dihydrolipoamide dehydrogenase; Validated	98.32
PRK14694	468	putative mercuric reductase; Provisional	98.32
COG1232	444	HemY Protoporphyrinogen oxidase [Coenzyme metaboli	98.31
PRK11445	351	putative oxidoreductase; Provisional	98.31
PRK06185	407	hypothetical protein; Provisional	98.31
PRK05732	395	2-octaprenyl-6-methoxyphenyl hydroxylase; Validate	98.31
COG1249	454	Lpd Pyruvate/2-oxoglutarate dehydrogenase complex,	98.31
PRK07588	391	hypothetical protein; Provisional	98.3
COG1233	487	Phytoene dehydrogenase and related proteins [Secon	98.3
PRK13512	438	coenzyme A disulfide reductase; Provisional	98.3
TIGR01424	446	gluta_reduc_2 glutathione-disulfide reductase, pla	98.29
TIGR02734	502	crtI_fam phytoene desaturase. Phytoene is converte	98.29
PRK08850	405	2-octaprenyl-6-methoxyphenol hydroxylase; Validate	98.29
PRK06134	581	putative FAD-binding dehydrogenase; Reviewed	98.29
PRK06116	450	glutathione reductase; Validated	98.28
TIGR01988	385	Ubi-OHases Ubiquinone biosynthesis hydroxylase, Ub	98.28
TIGR01984	382	UbiH 2-polyprenyl-6-methoxyphenol 4-hydroxylase. T	98.28
COG3380	331	Predicted NAD/FAD-dependent oxidoreductase [Genera	98.27
PRK06753	373	hypothetical protein; Provisional	98.27
PRK05249	461	soluble pyridine nucleotide transhydrogenase; Prov	98.27
TIGR01789	370	lycopene_cycl lycopene cyclase. This model represe	98.27
PLN00093	450	geranylgeranyl diphosphate reductase; Provisional	98.26
TIGR02731	453	phytoene_desat phytoene desaturase. Plants and cya	98.26
PRK07843	557	3-ketosteroid-delta-1-dehydrogenase; Reviewed	98.26
PRK07846	451	mycothione reductase; Reviewed	98.26
PRK08132	547	FAD-dependent oxidoreductase; Provisional	98.25
PRK06370	463	mercuric reductase; Validated	98.23
TIGR02023	388	BchP-ChlP geranylgeranyl reductase. This model rep	98.23
PTZ00363	443	rab-GDP dissociation inhibitor; Provisional	98.23
TIGR01989	437	COQ6 Ubiquinone biosynthesis mono0xygenase COQ6. T	98.23
TIGR03169	364	Nterm_to_SelD pyridine nucleotide-disulfide oxidor	98.23
PRK07818	466	dihydrolipoamide dehydrogenase; Reviewed	98.22
PLN02612	567	phytoene desaturase	98.22
COG1252	405	Ndh NADH dehydrogenase, FAD-containing subunit [En	98.22
TIGR01421	450	gluta_reduc_1 glutathione-disulfide reductase, ani	98.22
PRK06996	398	hypothetical protein; Provisional	98.21
TIGR02053	463	MerA mercuric reductase. This model represents the	98.21
PRK07845	466	flavoprotein disulfide reductase; Reviewed	98.2
PRK12409	410	D-amino acid dehydrogenase small subunit; Provisio	98.2
PTZ00383	497	malate:quinone oxidoreductase; Provisional	98.2
PRK06327	475	dihydrolipoamide dehydrogenase; Validated	98.19
TIGR02374	785	nitri_red_nirB nitrite reductase [NAD(P)H], large	98.19
PF01494	356	FAD_binding_3: FAD binding domain; InterPro: IPR00	98.18
PRK08401	466	L-aspartate oxidase; Provisional	98.17
PRK01747	662	mnmC bifunctional tRNA (mnm(5)s(2)U34)-methyltrans	98.17
PRK08243	392	4-hydroxybenzoate 3-monooxygenase; Validated	98.16
PLN02507	499	glutathione reductase	98.16
PTZ00318	424	NADH dehydrogenase-like protein; Provisional	98.15
PF12831	428	FAD_oxidored: FAD dependent oxidoreductase; PDB: 3	98.15
PRK14989	847	nitrite reductase subunit NirD; Provisional	98.15
TIGR01292	300	TRX_reduct thioredoxin-disulfide reductase. This m	98.15
TIGR02360	390	pbenz_hydroxyl 4-hydroxybenzoate 3-monooxygenase.	98.15
TIGR01373	407	soxB sarcosine oxidase, beta subunit family, heter	98.14
PRK06617	374	2-octaprenyl-6-methoxyphenyl hydroxylase; Validate	98.14
TIGR03219	414	salicylate_mono salicylate 1-monooxygenase. Member	98.13
PRK06115	466	dihydrolipoamide dehydrogenase; Reviewed	98.13
TIGR03452	452	mycothione_red mycothione reductase. Mycothiol, a	98.12
PTZ00052	499	thioredoxin reductase; Provisional	98.12
PLN02661	357	Putative thiazole synthesis	98.12
PRK06175	433	L-aspartate oxidase; Provisional	98.12
COG0446	415	HcaD Uncharacterized NAD(FAD)-dependent dehydrogen	98.11
PF13738	203	Pyr_redox_3: Pyridine nucleotide-disulphide oxidor	98.11
PRK07233	434	hypothetical protein; Provisional	98.11
PRK06481	506	fumarate reductase flavoprotein subunit; Validated	98.11
PRK09564	444	coenzyme A disulfide reductase; Reviewed	98.1
TIGR00275	400	flavoprotein, HI0933 family. The model when search	98.1
PF03486	409	HI0933_like: HI0933-like protein; InterPro: IPR004	98.09
TIGR03364	365	HpnW_proposed FAD dependent oxidoreductase TIGR033	98.09
PF01134	392	GIDA: Glucose inhibited division protein A; InterP	98.09
PRK08010	441	pyridine nucleotide-disulfide oxidoreductase; Prov	98.09
PRK13748	561	putative mercuric reductase; Provisional	98.09
TIGR02028	398	ChlP geranylgeranyl reductase. This model represen	98.09
TIGR01423	486	trypano_reduc trypanothione-disulfide reductase. T	98.08
PF01134	392	GIDA: Glucose inhibited division protein A; InterP	98.07
TIGR01438	484	TGR thioredoxin and glutathione reductase selenopr	98.06
PRK06475	400	salicylate hydroxylase; Provisional	98.06
PRK14727	479	putative mercuric reductase; Provisional	98.05
PRK05945	575	sdhA succinate dehydrogenase flavoprotein subunit;	98.05
PRK13339	497	malate:quinone oxidoreductase; Reviewed	98.05
TIGR00292	254	thiazole biosynthesis enzyme. This enzyme is invol	98.01
PRK06292	460	dihydrolipoamide dehydrogenase; Validated	98.0
PRK00711	416	D-amino acid dehydrogenase small subunit; Validate	97.99
PTZ00058	561	glutathione reductase; Provisional	97.99
PF13450	68	NAD_binding_8: NAD(P)-binding Rossmann-like domain	97.98
TIGR00136	617	gidA glucose-inhibited division protein A. GidA, t	97.96
COG2509	486	Uncharacterized FAD-dependent dehydrogenases [Gene	97.96
PRK06467	471	dihydrolipoamide dehydrogenase; Reviewed	97.93
PRK04176	257	ribulose-1,5-biphosphate synthetase; Provisional	97.93
PRK11101	546	glpA sn-glycerol-3-phosphate dehydrogenase subunit	97.92
TIGR03140	515	AhpF alkyl hydroperoxide reductase, F subunit. Thi	97.92
KOG1336	478	consensus Monodehydroascorbate/ferredoxin reductas	97.91
PRK06847	375	hypothetical protein; Provisional	97.91
PRK10262	321	thioredoxin reductase; Provisional	97.9
TIGR01813	439	flavo_cyto_c flavocytochrome c. This model describ	97.88
PRK07804	541	L-aspartate oxidase; Provisional	97.87
PRK08294	634	phenol 2-monooxygenase; Provisional	97.86
PRK06069	577	sdhA succinate dehydrogenase flavoprotein subunit;	97.86
COG1635	262	THI4 Ribulose 1,5-bisphosphate synthetase, convert	97.86
PTZ00153	659	lipoamide dehydrogenase; Provisional	97.85
PRK15317	517	alkyl hydroperoxide reductase subunit F; Provision	97.84
PRK09078	598	sdhA succinate dehydrogenase flavoprotein subunit;	97.84
PRK07538	413	hypothetical protein; Provisional	97.84
PRK08205	583	sdhA succinate dehydrogenase flavoprotein subunit;	97.83
PLN02546	558	glutathione reductase	97.83
PRK06452	566	sdhA succinate dehydrogenase flavoprotein subunit;	97.82
PF01946	230	Thi4: Thi4 family; PDB: 1RP0_A 3FPZ_B 3JSK_K.	97.82
PF07992	201	Pyr_redox_2: Pyridine nucleotide-disulphide oxidor	97.82
KOG2495	491	consensus NADH-dehydrogenase (ubiquinone) [Energy	97.82
PRK07057	591	sdhA succinate dehydrogenase flavoprotein subunit;	97.81
TIGR01812	566	sdhA_frdA_Gneg succinate dehydrogenase or fumarate	97.81
PRK07573	640	sdhA succinate dehydrogenase flavoprotein subunit;	97.8
PRK09231	582	fumarate reductase flavoprotein subunit; Validated	97.79
KOG2820	399	consensus FAD-dependent oxidoreductase [General fu	97.78
COG2907	447	Predicted NAD/FAD-binding protein [General functio	97.77
TIGR01176	580	fum_red_Fp fumarate reductase, flavoprotein subuni	97.76
KOG0029	501	consensus Amine oxidase [Secondary metabolites bio	97.72
PRK11749	457	dihydropyrimidine dehydrogenase subunit A; Provisi	97.63
PRK07395	553	L-aspartate oxidase; Provisional	97.61
PRK07208	479	hypothetical protein; Provisional	97.6
PRK06834	488	hypothetical protein; Provisional	97.59
PRK12770	352	putative glutamate synthase subunit beta; Provisio	97.57
PRK08773	392	2-octaprenyl-3-methyl-6-methoxy-1,4-benzoquinol hy	97.56
PRK12810	471	gltD glutamate synthase subunit beta; Reviewed	97.56
PF06039	488	Mqo: Malate:quinone oxidoreductase (Mqo); InterPro	97.52
PRK08244	493	hypothetical protein; Provisional	97.52
COG0445	621	GidA Flavin-dependent tRNA uridine 5-carboxymethyl	97.52
COG0578	532	GlpA Glycerol-3-phosphate dehydrogenase [Energy pr	97.51
PLN02172	461	flavin-containing monooxygenase FMO GS-OX	97.51
PRK07236	386	hypothetical protein; Provisional	97.5
PLN02463	447	lycopene beta cyclase	97.49
PRK08255	765	salicylyl-CoA 5-hydroxylase; Reviewed	97.49
KOG2665	453	consensus Predicted FAD-dependent oxidoreductase [	97.49
PRK09126	392	hypothetical protein; Provisional	97.48
COG0492	305	TrxB Thioredoxin reductase [Posttranslational modi	97.48
TIGR01316	449	gltA glutamate synthase (NADPH), homotetrameric. T	97.48
PRK05868	372	hypothetical protein; Validated	97.47
PRK10157	428	putative oxidoreductase FixC; Provisional	97.46
PRK01438	480	murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate syn	97.45
PRK11883	451	protoporphyrinogen oxidase; Reviewed	97.44
PRK08163	396	salicylate hydroxylase; Provisional	97.42
PRK07588	391	hypothetical protein; Provisional	97.41
PRK07333	403	2-octaprenyl-6-methoxyphenyl hydroxylase; Provisio	97.41
PLN02529	738	lysine-specific histone demethylase 1	97.41
TIGR02032	295	GG-red-SF geranylgeranyl reductase family. This mo	97.41
PRK11259	376	solA N-methyltryptophan oxidase; Provisional	97.4
PRK12779	944	putative bifunctional glutamate synthase subunit b	97.38
KOG1335	506	consensus Dihydrolipoamide dehydrogenase [Energy p	97.37
PLN02568	539	polyamine oxidase	97.36
COG0493	457	GltD NADPH-dependent glutamate synthase beta chain	97.36
PRK09853	1019	putative selenate reductase subunit YgfK; Provisio	97.34
PRK07190	487	hypothetical protein; Provisional	97.34
PLN02268	435	probable polyamine oxidase	97.34
PRK06184	502	hypothetical protein; Provisional	97.33
PLN02785	587	Protein HOTHEAD	97.33
PLN02985	514	squalene monooxygenase	97.32
PRK05335	436	tRNA (uracil-5-)-methyltransferase Gid; Reviewed	97.31
PRK01438	480	murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate syn	97.31
PF00743	531	FMO-like: Flavin-binding monooxygenase-like; Inter	97.31
PRK05192	618	tRNA uridine 5-carboxymethylaminomethyl modificati	97.3
PRK12831	464	putative oxidoreductase; Provisional	97.3
PRK05714	405	2-octaprenyl-3-methyl-6-methoxy-1,4-benzoquinol hy	97.29
PRK06753	373	hypothetical protein; Provisional	97.29
PLN02576	496	protoporphyrinogen oxidase	97.29
TIGR00562	462	proto_IX_ox protoporphyrinogen oxidase. This prote	97.29
KOG0685	498	consensus Flavin-containing amine oxidase [Coenzym	97.28
TIGR01984	382	UbiH 2-polyprenyl-6-methoxyphenol 4-hydroxylase. T	97.28
PF01494	356	FAD_binding_3: FAD binding domain; InterPro: IPR00	97.27
TIGR00031	377	UDP-GALP_mutase UDP-galactopyranose mutase. The ge	97.27
PRK13369	502	glycerol-3-phosphate dehydrogenase; Provisional	97.26
KOG4254	561	consensus Phytoene desaturase [Coenzyme transport	97.26
PRK12416	463	protoporphyrinogen oxidase; Provisional	97.24
COG0644	396	FixC Dehydrogenases (flavoproteins) [Energy produc	97.24
PRK12266	508	glpD glycerol-3-phosphate dehydrogenase; Reviewed	97.24
PRK08274	466	tricarballylate dehydrogenase; Validated	97.23
PRK08132	547	FAD-dependent oxidoreductase; Provisional	97.22
COG3349	485	Uncharacterized conserved protein [Function unknow	97.22
COG0665	387	DadA Glycine/D-amino acid oxidases (deaminating) [	97.22
COG2072	443	TrkA Predicted flavoprotein involved in K+ transpo	97.21
PLN02697	529	lycopene epsilon cyclase	97.2
TIGR01988	385	Ubi-OHases Ubiquinone biosynthesis hydroxylase, Ub	97.2
PRK08849	384	2-octaprenyl-3-methyl-6-methoxy-1,4-benzoquinol hy	97.19
TIGR03143	555	AhpF_homolog putative alkyl hydroperoxide reductas	97.19
TIGR01377	380	soxA_mon sarcosine oxidase, monomeric form. Sarcos	97.18
TIGR00136	617	gidA glucose-inhibited division protein A. GidA, t	97.18
PF14721	133	AIF_C: Apoptosis-inducing factor, mitochondrion-as	97.16
PTZ00367	567	squalene epoxidase; Provisional	97.16
PLN02927	668	antheraxanthin epoxidase/zeaxanthin epoxidase	97.16
TIGR02733	492	desat_CrtD C-3',4' desaturase CrtD. Members of thi	97.15
PLN02661	357	Putative thiazole synthesis	97.14
PRK08013	400	oxidoreductase; Provisional	97.13
PRK08020	391	ubiF 2-octaprenyl-3-methyl-6-methoxy-1,4-benzoquin	97.12
PRK07364	415	2-octaprenyl-6-methoxyphenyl hydroxylase; Validate	97.11
PRK08850	405	2-octaprenyl-6-methoxyphenol hydroxylase; Validate	97.11
PRK07608	388	ubiquinone biosynthesis hydroxylase family protein	97.08
PF00890	417	FAD_binding_2: FAD binding domain of the Pfam fami	97.04
PRK10015	429	oxidoreductase; Provisional	97.04
COG0445	621	GidA Flavin-dependent tRNA uridine 5-carboxymethyl	97.04
PRK06183	538	mhpA 3-(3-hydroxyphenyl)propionate hydroxylase; Va	97.04
TIGR01790	388	carotene-cycl lycopene cyclase family protein. Thi	97.02
PRK08641	589	sdhA succinate dehydrogenase flavoprotein subunit;	97.01
TIGR02485	432	CobZ_N-term precorrin 3B synthase CobZ. CobZ is es	97.01
TIGR02730	493	carot_isom carotene isomerase. Members of this fam	97.0
TIGR01372	985	soxA sarcosine oxidase, alpha subunit family, hete	96.96
PRK06617	374	2-octaprenyl-6-methoxyphenyl hydroxylase; Validate	96.96
COG1635	262	THI4 Ribulose 1,5-bisphosphate synthetase, convert	96.95
PLN02328	808	lysine-specific histone demethylase 1 homolog	96.95
PRK12778	752	putative bifunctional 2-polyprenylphenol hydroxyla	96.94
KOG1399	448	consensus Flavin-containing monooxygenase [Seconda	96.94
PRK06475	400	salicylate hydroxylase; Provisional	96.93
PTZ00188	506	adrenodoxin reductase; Provisional	96.92
TIGR01377	380	soxA_mon sarcosine oxidase, monomeric form. Sarcos	96.9
COG1231	450	Monoamine oxidase [Amino acid transport and metabo	96.9
PRK07121	492	hypothetical protein; Validated	96.9
PRK12814	652	putative NADPH-dependent glutamate synthase small	96.89
PLN02676	487	polyamine oxidase	96.89
PRK06185	407	hypothetical protein; Provisional	96.89
PRK05257	494	malate:quinone oxidoreductase; Validated	96.89
PLN02852	491	ferredoxin-NADP+ reductase	96.89
TIGR01789	370	lycopene_cycl lycopene cyclase. This model represe	96.86
TIGR03219	414	salicylate_mono salicylate 1-monooxygenase. Member	96.86
PF12831	428	FAD_oxidored: FAD dependent oxidoreductase; PDB: 3	96.86
TIGR01318	467	gltD_gamma_fam glutamate synthase small subunit fa	96.85
PF14691	111	Fer4_20: Dihydroprymidine dehydrogenase domain II,	96.84
TIGR03329	460	Phn_aa_oxid putative aminophosphonate oxidoreducta	96.84
PRK07494	388	2-octaprenyl-6-methoxyphenyl hydroxylase; Provisio	96.84
PLN00128	635	Succinate dehydrogenase [ubiquinone] flavoprotein	96.83
KOG1276	491	consensus Protoporphyrinogen oxidase [Coenzyme tra	96.81
PTZ00139	617	Succinate dehydrogenase [ubiquinone] flavoprotein	96.81
PF13434	341	K_oxygenase: L-lysine 6-monooxygenase (NADPH-requi	96.81
PRK08626	657	fumarate reductase flavoprotein subunit; Provision	96.81
PF01946	230	Thi4: Thi4 family; PDB: 1RP0_A 3FPZ_B 3JSK_K.	96.8
PRK08275	554	putative oxidoreductase; Provisional	96.8
PRK05732	395	2-octaprenyl-6-methoxyphenyl hydroxylase; Validate	96.79
PRK07803	626	sdhA succinate dehydrogenase flavoprotein subunit;	96.79
PF00732	296	GMC_oxred_N: GMC oxidoreductase; InterPro: IPR0001	96.78
PRK12834	549	putative FAD-binding dehydrogenase; Reviewed	96.78
TIGR02732	474	zeta_caro_desat carotene 7,8-desaturase. Carotene	96.76
TIGR00137	433	gid_trmFO tRNA:m(5)U-54 methyltransferase. This mo	96.75
PRK08243	392	4-hydroxybenzoate 3-monooxygenase; Validated	96.75
TIGR01320	483	mal_quin_oxido malate:quinone-oxidoreductase. This	96.74
KOG2820	399	consensus FAD-dependent oxidoreductase [General fu	96.73
PRK11101	546	glpA sn-glycerol-3-phosphate dehydrogenase subunit	96.72
TIGR03315	1012	Se_ygfK putative selenate reductase, YgfK subunit.	96.71
COG0562	374	Glf UDP-galactopyranose mutase [Cell envelope biog	96.7
PLN02487	569	zeta-carotene desaturase	96.7
COG1251	793	NirB NAD(P)H-nitrite reductase [Energy production	96.69
PRK12769	654	putative oxidoreductase Fe-S binding subunit; Revi	96.67
PRK12837	513	3-ketosteroid-delta-1-dehydrogenase; Provisional	96.65
KOG2614	420	consensus Kynurenine 3-monooxygenase and related f	96.65
TIGR01813	439	flavo_cyto_c flavocytochrome c. This model describ	96.64
TIGR00275	400	flavoprotein, HI0933 family. The model when search	96.64
PRK09897	534	hypothetical protein; Provisional	96.64
PRK11259	376	solA N-methyltryptophan oxidase; Provisional	96.63
PF05834	374	Lycopene_cycl: Lycopene cyclase protein; InterPro:	96.63
TIGR03329	460	Phn_aa_oxid putative aminophosphonate oxidoreducta	96.62
KOG2311	679	consensus NAD/FAD-utilizing protein possibly invol	96.61
PRK08958	588	sdhA succinate dehydrogenase flavoprotein subunit;	96.59
PRK06481	506	fumarate reductase flavoprotein subunit; Validated	96.59
KOG2311	679	consensus NAD/FAD-utilizing protein possibly invol	96.59
PLN02464	627	glycerol-3-phosphate dehydrogenase	96.59
PRK06996	398	hypothetical protein; Provisional	96.58
PRK06126	545	hypothetical protein; Provisional	96.58
PRK12775	1006	putative trifunctional 2-polyprenylphenol hydroxyl	96.57
PRK06854	608	adenylylsulfate reductase subunit alpha; Validated	96.57
PRK02106	560	choline dehydrogenase; Validated	96.54
PRK12839	572	hypothetical protein; Provisional	96.53
KOG2404	477	consensus Fumarate reductase, flavoprotein subunit	96.51
KOG1346	659	consensus Programmed cell death 8 (apoptosis-induc	96.5
PRK12835	584	3-ketosteroid-delta-1-dehydrogenase; Reviewed	96.49
TIGR03364	365	HpnW_proposed FAD dependent oxidoreductase TIGR033	96.44
PRK13984	604	putative oxidoreductase; Provisional	96.44
PRK12844	557	3-ketosteroid-delta-1-dehydrogenase; Reviewed	96.42
TIGR02360	390	pbenz_hydroxyl 4-hydroxybenzoate 3-monooxygenase.	96.42
PRK07538	413	hypothetical protein; Provisional	96.4
TIGR01317	485	GOGAT_sm_gam glutamate synthases, NADH/NADPH, smal	96.4
PRK06263	543	sdhA succinate dehydrogenase flavoprotein subunit;	96.37
TIGR02061	614	aprA adenosine phosphosulphate reductase, alpha su	96.35
COG1053	562	SdhA Succinate dehydrogenase/fumarate reductase, f	96.34
PLN02815	594	L-aspartate oxidase	96.26
PF13454	156	NAD_binding_9: FAD-NAD(P)-binding	96.2
TIGR02023	388	BchP-ChlP geranylgeranyl reductase. This model rep	96.2
TIGR02028	398	ChlP geranylgeranyl reductase. This model represen	96.19
PRK11445	351	putative oxidoreductase; Provisional	96.19
TIGR01989	437	COQ6 Ubiquinone biosynthesis mono0xygenase COQ6. T	96.19
COG3634	520	AhpF Alkyl hydroperoxide reductase, large subunit	96.15
PLN03000	881	amine oxidase	96.14
PRK12809	639	putative oxidoreductase Fe-S binding subunit; Revi	96.13
PRK13800	897	putative oxidoreductase/HEAT repeat-containing pro	96.1
PRK12845	564	3-ketosteroid-delta-1-dehydrogenase; Reviewed	96.05
PRK08401	466	L-aspartate oxidase; Provisional	96.05
PF00890	417	FAD_binding_2: FAD binding domain of the Pfam fami	96.04
PRK07804	541	L-aspartate oxidase; Provisional	96.02
PRK08274	466	tricarballylate dehydrogenase; Validated	96.01
PLN02464	627	glycerol-3-phosphate dehydrogenase	95.93
PTZ00306	1167	NADH-dependent fumarate reductase; Provisional	95.93
TIGR01811	603	sdhA_Bsu succinate dehydrogenase or fumarate reduc	95.91
TIGR02462	544	pyranose_ox pyranose oxidase. Pyranose oxidase (al	95.9
COG0665	387	DadA Glycine/D-amino acid oxidases (deaminating) [	95.87
PF02852	110	Pyr_redox_dim: Pyridine nucleotide-disulphide oxid	95.79
TIGR01812	566	sdhA_frdA_Gneg succinate dehydrogenase or fumarate	95.79
PRK07573	640	sdhA succinate dehydrogenase flavoprotein subunit;	95.76
TIGR00137	433	gid_trmFO tRNA:m(5)U-54 methyltransferase. This mo	95.75
COG3573	552	Predicted oxidoreductase [General function predict	95.75
PRK13369	502	glycerol-3-phosphate dehydrogenase; Provisional	95.72
PLN00093	450	geranylgeranyl diphosphate reductase; Provisional	95.7
PRK14106	450	murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate syn	95.68
TIGR01811	603	sdhA_Bsu succinate dehydrogenase or fumarate reduc	95.66
PRK12771	564	putative glutamate synthase (NADPH) small subunit;	95.65
KOG0404	322	consensus Thioredoxin reductase [Posttranslational	95.63
PRK12843	578	putative FAD-binding dehydrogenase; Reviewed	95.62
PLN02976	1713	amine oxidase	95.58
PRK06567	1028	putative bifunctional glutamate synthase subunit b	95.58
KOG1298	509	consensus Squalene monooxygenase [Lipid transport	95.53
KOG2852	380	consensus Possible oxidoreductase [General functio	95.49
KOG2960	328	consensus Protein involved in thiamine biosynthesi	95.43
COG3380	331	Predicted NAD/FAD-dependent oxidoreductase [Genera	95.4
PRK06452	566	sdhA succinate dehydrogenase flavoprotein subunit;	95.39
TIGR00551	488	nadB L-aspartate oxidase. L-aspartate oxidase is t	95.35
PRK12266	508	glpD glycerol-3-phosphate dehydrogenase; Reviewed	95.33
PLN02985	514	squalene monooxygenase	95.33
PLN02927	668	antheraxanthin epoxidase/zeaxanthin epoxidase	95.31
PRK08294	634	phenol 2-monooxygenase; Provisional	95.28
TIGR02485	432	CobZ_N-term precorrin 3B synthase CobZ. CobZ is es	95.27
PRK09078	598	sdhA succinate dehydrogenase flavoprotein subunit;	95.23
TIGR01810	532	betA choline dehydrogenase. This enzyme is a membe	95.23
KOG2614	420	consensus Kynurenine 3-monooxygenase and related f	95.22
COG2303	542	BetA Choline dehydrogenase and related flavoprotei	95.2
KOG3851	446	consensus Sulfide:quinone oxidoreductase/flavo-bin	95.19
PRK06175	433	L-aspartate oxidase; Provisional	95.07
PRK05945	575	sdhA succinate dehydrogenase flavoprotein subunit;	95.02
KOG0029	501	consensus Amine oxidase [Secondary metabolites bio	94.95
PRK07057	591	sdhA succinate dehydrogenase flavoprotein subunit;	94.95
PTZ00139	617	Succinate dehydrogenase [ubiquinone] flavoprotein	94.95
KOG2853	509	consensus Possible oxidoreductase [General functio	94.93
PRK07121	492	hypothetical protein; Validated	94.88
PRK06263	543	sdhA succinate dehydrogenase flavoprotein subunit;	94.88
KOG0405	478	consensus Pyridine nucleotide-disulphide oxidoredu	94.75
PRK08958	588	sdhA succinate dehydrogenase flavoprotein subunit;	94.69
KOG2844	856	consensus Dimethylglycine dehydrogenase precursor	94.68
PRK06854	608	adenylylsulfate reductase subunit alpha; Validated	94.65
KOG0399	2142	consensus Glutamate synthase [Amino acid transport	94.51
PLN00128	635	Succinate dehydrogenase [ubiquinone] flavoprotein	94.44
PRK07803	626	sdhA succinate dehydrogenase flavoprotein subunit;	94.41
PRK13800	897	putative oxidoreductase/HEAT repeat-containing pro	94.4

>PRK09754 phenylpropionate dioxygenase ferredoxin reductase subunit; Provisional

Probab=100.00  E-value=4.8e-56  Score=443.88  Aligned_cols=371  Identities=28%  Similarity=0.440  Sum_probs=315.7

Q ss_pred             CCCcEEEEcCcHHHHHHHHHHHHcCCCCCcEEEEcCCCCCCCCCCCCcccccCCCCCCCCCCCCCccccCCCCCCCCHhH
Q 012165           50 ENREFVIVGGGNAAGYAARTFVEHGMADGRLCIVSKEAYAPYERPALTKGYLFPLDKKPARLPGFHTCVGSGGERQTPEW  129 (469)
Q Consensus        50 ~~~~vvIIGgG~AGl~aA~~L~~~g~~~~~V~vie~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  129 (469)
                      .+++|||||||+||++||.+|++.++ +.+|+|++++++++|.+|++++.++........             .....++
T Consensus         2 ~~~~vvIIGgG~AG~~aA~~Lr~~~~-~~~I~li~~e~~~~y~r~~l~~~~~~~~~~~~~-------------~~~~~~~   67 (396)
T PRK09754          2 KEKTIIIVGGGQAAAMAAASLRQQGF-TGELHLFSDERHLPYERPPLSKSMLLEDSPQLQ-------------QVLPANW   67 (396)
T ss_pred             CcCcEEEECChHHHHHHHHHHHhhCC-CCCEEEeCCCCCCCCCCCCCCHHHHCCCCcccc-------------ccCCHHH
Confidence            45689999999999999999999987 789999999999999999998866543221111             1234678


Q ss_pred             HHHCCcEEEeCCcEEEEeCCCcEEEeCCCeEEEeccEEeccCCCCCcCCCCCCCCcCcEEEecCHHHHHHHHHhhhcCCe
Q 012165          130 YKEKGIEMIYQDPVTSIDIEKQTLITNSGKLLKYGSLIVATGCTASRFPEKIGGYLPGVHYIRDVADADALISSLEKAKK  209 (469)
Q Consensus       130 ~~~~~i~~~~~~~v~~id~~~~~v~~~~g~~~~yd~lVlAtG~~~~~~~~~~g~~~~~v~~~~~~~~~~~~~~~~~~~~~  209 (469)
                      +.+.+++++.++.|..+|+++++|++.+|+++.||+||||||++|+.+| .++...++++++++..++.++.+.+..+++
T Consensus        68 ~~~~~i~~~~g~~V~~id~~~~~v~~~~g~~~~yd~LViATGs~~~~~p-~~~~~~~~v~~~~~~~da~~l~~~~~~~~~  146 (396)
T PRK09754         68 WQENNVHLHSGVTIKTLGRDTRELVLTNGESWHWDQLFIATGAAARPLP-LLDALGERCFTLRHAGDAARLREVLQPERS  146 (396)
T ss_pred             HHHCCCEEEcCCEEEEEECCCCEEEECCCCEEEcCEEEEccCCCCCCCC-CCCcCCCCEEecCCHHHHHHHHHHhhcCCe
Confidence            8899999999988999999999999999999999999999999987544 344446788999999999888888888999


Q ss_pred             EEEEcCChHHHHHHHHHHhCCCeEe-------------------eeHHHHHHcCcEEEcCCeEEEEEeCCCCcEEEEEcC
Q 012165          210 VVVVGGGYIGMEVAAAAVGWKLDTT-------------------RYEQLYQQNGVKFVKGASIKNLEAGSDGRVAAVKLE  270 (469)
Q Consensus       210 vvVvG~G~~g~e~A~~l~~~g~~v~-------------------~~~~~l~~~gV~~~~~~~v~~i~~~~~~~v~~v~~~  270 (469)
                      ++|||+|++|+|+|..|.++|.+|+                   .+.+.+++.||++++++.+++++.  ++.+ .+.+.
T Consensus       147 vvViGgG~ig~E~A~~l~~~g~~Vtlv~~~~~~l~~~~~~~~~~~l~~~l~~~GV~i~~~~~V~~i~~--~~~~-~v~l~  223 (396)
T PRK09754        147 VVIVGAGTIGLELAASATQRRCKVTVIELAATVMGRNAPPPVQRYLLQRHQQAGVRILLNNAIEHVVD--GEKV-ELTLQ  223 (396)
T ss_pred             EEEECCCHHHHHHHHHHHHcCCeEEEEecCCcchhhhcCHHHHHHHHHHHHHCCCEEEeCCeeEEEEc--CCEE-EEEEC
Confidence            9999999999999999999999987                   345566789999999999999974  2333 57788


Q ss_pred             CCCEEeCCEEEEccCCccCCchhhhcCCcccCCCEEeCCCCCCCCCceEEeccccccCCccCCcccccchHHHHHHHHHH
Q 012165          271 DGSTIDADTIVIGIGAKPTVSPFERVGLNSSVGGIQVDGQFRTRMPGIFAIGDVAAFPLKMYDRTARVEHVDHARQSAQH  350 (469)
Q Consensus       271 ~g~~i~~D~vi~a~G~~p~~~~~~~~gl~~~~g~i~Vd~~~~t~~~~Vfa~GD~a~~~~~~~~~~~~~~~~~~A~~~a~~  350 (469)
                      +|+++++|.||+++|.+||+.+++++++..+ ++|.||+++||++|||||+|||+..+.. .|...+.++|..|..||+.
T Consensus       224 ~g~~i~aD~Vv~a~G~~pn~~l~~~~gl~~~-~gi~vd~~~~ts~~~IyA~GD~a~~~~~-~g~~~~~~~~~~A~~qg~~  301 (396)
T PRK09754        224 SGETLQADVVIYGIGISANDQLAREANLDTA-NGIVIDEACRTCDPAIFAGGDVAITRLD-NGALHRCESWENANNQAQI  301 (396)
T ss_pred             CCCEEECCEEEECCCCChhhHHHHhcCCCcC-CCEEECCCCccCCCCEEEccceEeeeCC-CCCEEEECcHHHHHHHHHH
Confidence            9999999999999999999988888888775 6799999999999999999999987765 5666678899999999999


Q ss_pred             HHHHHhcCCCCCCCCCCceeeecccccCCCcceeeEEeecCCCc-EEEEccCC-CcEEEEEEeCCEEEEEEeecCChHHh
Q 012165          351 CIKALLSAQTHTYDYLPYFYSRVFEYEGSPRKVWWQFFGDNVGE-TIEIGNFD-PKIATFWIDSGKLKGVLVESGSPEEF  428 (469)
Q Consensus       351 ~a~~i~~~~~~~~~~~p~~~~~~~~~~g~~~~~~~~~~G~~~~~-~~~~~~~~-~~~~~~~~~~~~l~g~~~~~~~~~~~  428 (469)
                      +|+||++. ..+|..+||||+++|+.+       ++++|....+ ....++.+ .++..+|+++|+|+|+++ .|+++.+
T Consensus       302 aa~ni~g~-~~~~~~~p~~~~~~~~~~-------~~~~G~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~~~-~~~~~~~  372 (396)
T PRK09754        302 AAAAMLGL-PLPLLPPPWFWSDQYSDN-------LQFIGDMRGDDWLCRGNPETQKAIWFNLQNGVLIGAVT-LNQGREI  372 (396)
T ss_pred             HHHHhcCC-CCCCCCCCceEEEeCCcc-------EEEeeCCCCCEEEEecCCCCceEEEEEeeCCEEEEEEE-ECCHHHH
Confidence            99999964 567899999999999875       8999975543 44566544 457778889999999996 8889999


Q ss_pred             HHHHHHHhCCCCCChhhhcCC
Q 012165          429 QLLPTLARSQPFVDKAKLQQA  449 (469)
Q Consensus       429 ~~~~~~~~~~~~~~~~~~~~~  449 (469)
                      ..++++++.+..+++..+.|+
T Consensus       373 ~~~~~~~~~~~~~~~~~~~~~  393 (396)
T PRK09754        373 RPIRKWIQSGKTFDAKLLIDE  393 (396)
T ss_pred             HHHHHHHHCCCCCCHHHhcCc
Confidence            999999999999998888765

>KOG1336 consensus Monodehydroascorbate/ferredoxin reductase [General function prediction only]

Probab=100.00  E-value=3.4e-52  Score=397.36  Aligned_cols=383  Identities=44%  Similarity=0.742  Sum_probs=342.1

Q ss_pred             CCCcEEEEcCcHHHHHHHHHHHHcCCCCCcEEEEcCCCCCCCCCCCCcccccCCCCCCCCCCCCCccccCCCCCCCCHhH
Q 012165           50 ENREFVIVGGGNAAGYAARTFVEHGMADGRLCIVSKEAYAPYERPALTKGYLFPLDKKPARLPGFHTCVGSGGERQTPEW  129 (469)
Q Consensus        50 ~~~~vvIIGgG~AGl~aA~~L~~~g~~~~~V~vie~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  129 (469)
                      ..++++|||+|++|..|+.++++.++ ..+++++..+.++||.||.|++.+.......               ..+..+|
T Consensus        73 ~ar~fvivGgG~~g~vaie~~r~~g~-~~ri~l~~~~~~~pydr~~Ls~~~~~~~~~~---------------a~r~~e~  136 (478)
T KOG1336|consen   73 AARHFVIVGGGPGGAVAIETLRQVGF-TERIALVKREYLLPYDRARLSKFLLTVGEGL---------------AKRTPEF  136 (478)
T ss_pred             ccceEEEEcCCchhhhhHhhHHhhCC-CcceEEEeccccCcccchhcccceeeccccc---------------cccChhh
Confidence            36799999999999999999999997 7899999999999999999988554332222               3466789


Q ss_pred             HHHCCcEEEeCCcEEEEeCCCcEEEeCCCeEEEeccEEeccCCCCCcCCCCCCCCcCcEEEecCHHHHHHHHHhhhcCCe
Q 012165          130 YKEKGIEMIYQDPVTSIDIEKQTLITNSGKLLKYGSLIVATGCTASRFPEKIGGYLPGVHYIRDVADADALISSLEKAKK  209 (469)
Q Consensus       130 ~~~~~i~~~~~~~v~~id~~~~~v~~~~g~~~~yd~lVlAtG~~~~~~~~~~g~~~~~v~~~~~~~~~~~~~~~~~~~~~  209 (469)
                      |++.+|++++++.|+++|...++|.+.+|+.+.|++|+||||+.++. +++||.+.+++.+++++.+++.+........+
T Consensus       137 Yke~gIe~~~~t~v~~~D~~~K~l~~~~Ge~~kys~LilATGs~~~~-l~~pG~~~~nv~~ireieda~~l~~~~~~~~~  215 (478)
T KOG1336|consen  137 YKEKGIELILGTSVVKADLASKTLVLGNGETLKYSKLIIATGSSAKT-LDIPGVELKNVFYLREIEDANRLVAAIQLGGK  215 (478)
T ss_pred             HhhcCceEEEcceeEEeeccccEEEeCCCceeecceEEEeecCcccc-CCCCCccccceeeeccHHHHHHHHHHhccCce
Confidence            99999999999999999999999999999999999999999998874 56789889999999999999999888888999


Q ss_pred             EEEEcCChHHHHHHHHHHhCCCeEe-------------------eeHHHHHHcCcEEEcCCeEEEEEeCCCCcEEEEEcC
Q 012165          210 VVVVGGGYIGMEVAAAAVGWKLDTT-------------------RYEQLYQQNGVKFVKGASIKNLEAGSDGRVAAVKLE  270 (469)
Q Consensus       210 vvVvG~G~~g~e~A~~l~~~g~~v~-------------------~~~~~l~~~gV~~~~~~~v~~i~~~~~~~v~~v~~~  270 (469)
                      |+++|+|++|+|+|..|...+.+++                   .++++++++||++++++.+.+++.+++|++..|.+.
T Consensus       216 vV~vG~G~ig~Evaa~l~~~~~~VT~V~~e~~~~~~lf~~~i~~~~~~y~e~kgVk~~~~t~~s~l~~~~~Gev~~V~l~  295 (478)
T KOG1336|consen  216 VVCVGGGFIGMEVAAALVSKAKSVTVVFPEPWLLPRLFGPSIGQFYEDYYENKGVKFYLGTVVSSLEGNSDGEVSEVKLK  295 (478)
T ss_pred             EEEECchHHHHHHHHHHHhcCceEEEEccCccchhhhhhHHHHHHHHHHHHhcCeEEEEecceeecccCCCCcEEEEEec
Confidence            9999999999999999999999988                   678999999999999999999998888999999999


Q ss_pred             CCCEEeCCEEEEccCCccCCchhhhcCCccc-CCCEEeCCCCCCCCCceEEeccccccCCccCCcccccchHHHHHHHHH
Q 012165          271 DGSTIDADTIVIGIGAKPTVSPFERVGLNSS-VGGIQVDGQFRTRMPGIFAIGDVAAFPLKMYDRTARVEHVDHARQSAQ  349 (469)
Q Consensus       271 ~g~~i~~D~vi~a~G~~p~~~~~~~~gl~~~-~g~i~Vd~~~~t~~~~Vfa~GD~a~~~~~~~~~~~~~~~~~~A~~~a~  349 (469)
                      ||+++++|+||+.+|.+||+.+++. +..++ .|+|.||+++||++|||||+||++.+|...++...+++|++.|+.+|+
T Consensus       296 dg~~l~adlvv~GiG~~p~t~~~~~-g~~~~~~G~i~V~~~f~t~~~~VyAiGDva~fp~~~~~~~~~v~H~~~A~~~g~  374 (478)
T KOG1336|consen  296 DGKTLEADLVVVGIGIKPNTSFLEK-GILLDSKGGIKVDEFFQTSVPNVYAIGDVATFPLKGYGEDRRVEHVDHARASGR  374 (478)
T ss_pred             cCCEeccCeEEEeeccccccccccc-cceecccCCEeehhceeeccCCcccccceeecccccccccccchHHHHHHHHHH
Confidence            9999999999999999999999987 55544 799999999999999999999999999988888777999999999999


Q ss_pred             HHHHHHhcCCCCCCCCCCceeeecccccCCCcceeeEEeecCCCcEEEEccCC-CcEEEEEEeCCEEEEEEeecCChHHh
Q 012165          350 HCIKALLSAQTHTYDYLPYFYSRVFEYEGSPRKVWWQFFGDNVGETIEIGNFD-PKIATFWIDSGKLKGVLVESGSPEEF  428 (469)
Q Consensus       350 ~~a~~i~~~~~~~~~~~p~~~~~~~~~~g~~~~~~~~~~G~~~~~~~~~~~~~-~~~~~~~~~~~~l~g~~~~~~~~~~~  428 (469)
                      ++...+.......+...||||+..|+..       |+++|...++.++.|+.+ .+|..+|++ +..+++.+-.+..+..
T Consensus       375 ~av~ai~~~~~~~~~~lPyf~t~~f~~~-------~~~~G~g~~~~v~~G~~e~~~f~ay~~k-~~~v~a~~~~g~~~~~  446 (478)
T KOG1336|consen  375 QAVKAIKMAPQDAYDYLPYFYTRFFSLS-------WRFAGDGVGDVVLFGDLEPGSFGAYWIK-GDKVGAVAEGGRDEEV  446 (478)
T ss_pred             hhhhhhhccCcccccccchHHHHHhhhh-------ccccCcCccceeeecccccccceeeEee-ccEEEEEeccCCChHH
Confidence            8877776544444789999999999864       899998888888888876 468999999 8888888877778889


Q ss_pred             HHHHHHHhCCCCCChhhhcCCCcHHHHHHH
Q 012165          429 QLLPTLARSQPFVDKAKLQQASSVEEALEI  458 (469)
Q Consensus       429 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  458 (469)
                      ..+..++++++.+..-.+.++.+.+.+++.
T Consensus       447 ~~~a~l~~~~~~v~~~~~~~~~~~~~~~~~  476 (478)
T KOG1336|consen  447 SQFAKLARQGPEVTSLKLLSKSGDSFWLTI  476 (478)
T ss_pred             HHHHHHHhcCCcchhhhhccccchhhHHhh
Confidence            999999999999998888888888888765

>PRK14989 nitrite reductase subunit NirD; Provisional

Probab=100.00  E-value=7.8e-46  Score=395.63  Aligned_cols=363  Identities=20%  Similarity=0.341  Sum_probs=286.3

Q ss_pred             CCcEEEEcCcHHHHHHHHHHHHcCC-CCCcEEEEcCCCCCCCCCCCCcccccCCCCCCCCCCCCCccccCCCCCCCCHhH
Q 012165           51 NREFVIVGGGNAAGYAARTFVEHGM-ADGRLCIVSKEAYAPYERPALTKGYLFPLDKKPARLPGFHTCVGSGGERQTPEW  129 (469)
Q Consensus        51 ~~~vvIIGgG~AGl~aA~~L~~~g~-~~~~V~vie~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  129 (469)
                      +++|||||+|+||+.+|.+|++++. ++.+||||+++++++|.++.++.. +...  ...++           .....+|
T Consensus         3 ~~kIVIVG~G~AG~~aa~~L~~~~~~~~~~Itvi~~e~~~~Y~r~~L~~~-~~~~--~~~~l-----------~~~~~~~   68 (847)
T PRK14989          3 KVRLAIIGNGMVGHRFIEDLLDKADAANFDITVFCEEPRIAYDRVHLSSY-FSHH--TAEEL-----------SLVREGF   68 (847)
T ss_pred             CCcEEEECCCHHHHHHHHHHHhhCCCCCCeEEEEECCCCCcccCCcchHh-HcCC--CHHHc-----------cCCCHHH
Confidence            4589999999999999999988742 246899999999999999888763 3221  11122           2345788


Q ss_pred             HHHCCcEEEeCCcEEEEeCCCcEEEeCCCeEEEeccEEeccCCCCCcCCCCCCCCcCcEEEecCHHHHHHHHHhhhcCCe
Q 012165          130 YKEKGIEMIYQDPVTSIDIEKQTLITNSGKLLKYGSLIVATGCTASRFPEKIGGYLPGVHYIRDVADADALISSLEKAKK  209 (469)
Q Consensus       130 ~~~~~i~~~~~~~v~~id~~~~~v~~~~g~~~~yd~lVlAtG~~~~~~~~~~g~~~~~v~~~~~~~~~~~~~~~~~~~~~  209 (469)
                      +++++++++.+++|+.+|++.+.|++.+|+++.||+||||||++|+ .|+++|.+.++++.++++.+...+......+++
T Consensus        69 ~~~~gI~~~~g~~V~~Id~~~~~V~~~~G~~i~yD~LVIATGs~p~-~p~ipG~~~~~v~~~rt~~d~~~l~~~~~~~k~  147 (847)
T PRK14989         69 YEKHGIKVLVGERAITINRQEKVIHSSAGRTVFYDKLIMATGSYPW-IPPIKGSETQDCFVYRTIEDLNAIEACARRSKR  147 (847)
T ss_pred             HHhCCCEEEcCCEEEEEeCCCcEEEECCCcEEECCEEEECCCCCcC-CCCCCCCCCCCeEEECCHHHHHHHHHHHhcCCe
Confidence            9999999999989999999999999999989999999999999987 566788777889999999999998888888999


Q ss_pred             EEEEcCChHHHHHHHHHHhCCCeEe-------------------eeHHHHHHcCcEEEcCCeEEEEEeCCCCcEEEEEcC
Q 012165          210 VVVVGGGYIGMEVAAAAVGWKLDTT-------------------RYEQLYQQNGVKFVKGASIKNLEAGSDGRVAAVKLE  270 (469)
Q Consensus       210 vvVvG~G~~g~e~A~~l~~~g~~v~-------------------~~~~~l~~~gV~~~~~~~v~~i~~~~~~~v~~v~~~  270 (469)
                      ++|||+|++|+|+|..|.++|.+|+                   .+.+.+++.||+++++..++++..++++....+.++
T Consensus       148 vvVIGgG~iGlE~A~~L~~~G~~VtvVe~~~~ll~~~ld~~~~~~l~~~L~~~GV~v~~~~~v~~I~~~~~~~~~~v~~~  227 (847)
T PRK14989        148 GAVVGGGLLGLEAAGALKNLGVETHVIEFAPMLMAEQLDQMGGEQLRRKIESMGVRVHTSKNTLEIVQEGVEARKTMRFA  227 (847)
T ss_pred             EEEECCCHHHHHHHHHHHHcCCeEEEEeccccchhhhcCHHHHHHHHHHHHHCCCEEEcCCeEEEEEecCCCceEEEEEC
Confidence            9999999999999999999999987                   356778899999999999999975433445578889


Q ss_pred             CCCEEeCCEEEEccCCccCCchhhhcCCccc-CCCEEeCCCCCCCCCceEEeccccccCCccCCcccccchHHHHHHHHH
Q 012165          271 DGSTIDADTIVIGIGAKPTVSPFERVGLNSS-VGGIQVDGQFRTRMPGIFAIGDVAAFPLKMYDRTARVEHVDHARQSAQ  349 (469)
Q Consensus       271 ~g~~i~~D~vi~a~G~~p~~~~~~~~gl~~~-~g~i~Vd~~~~t~~~~Vfa~GD~a~~~~~~~~~~~~~~~~~~A~~~a~  349 (469)
                      ||+++++|+||+++|++||+++++++|++.+ +|+|.||++|||++|||||+|||+......++      .+..|..+|+
T Consensus       228 dG~~i~~D~Vv~A~G~rPn~~L~~~~Gl~~~~~G~I~VD~~l~Ts~p~IYAiGD~a~~~~~~~g------l~~~a~~~a~  301 (847)
T PRK14989        228 DGSELEVDFIVFSTGIRPQDKLATQCGLAVAPRGGIVINDSCQTSDPDIYAIGECASWNNRVFG------LVAPGYKMAQ  301 (847)
T ss_pred             CCCEEEcCEEEECCCcccCchHHhhcCccCCCCCcEEECCCCcCCCCCEEEeecceeEcCcccc------cHHHHHHHHH
Confidence            9999999999999999999999999999875 57899999999999999999999987654433      4567999999


Q ss_pred             HHHHHHhcCCCCCCCCCCceeeecccccCCCcceeeEEeecCCCc------EEEEccCCCcEEEEEEe--CCEEEEEEee
Q 012165          350 HCIKALLSAQTHTYDYLPYFYSRVFEYEGSPRKVWWQFFGDNVGE------TIEIGNFDPKIATFWID--SGKLKGVLVE  421 (469)
Q Consensus       350 ~~a~~i~~~~~~~~~~~p~~~~~~~~~~g~~~~~~~~~~G~~~~~------~~~~~~~~~~~~~~~~~--~~~l~g~~~~  421 (469)
                      .+|.||++.. ..|.....  +......|..    +..+|...+.      ..........|+|++++  +++|+|+++ 
T Consensus       302 vaa~~i~g~~-~~~~g~~~--~~~lk~~G~~----v~s~G~~~~~~~~~~~~~~~~~~~~~y~Klv~~~~~~~LlGa~l-  373 (847)
T PRK14989        302 VAVDHLLGSE-NAFEGADL--SAKLKLLGVD----VGGIGDAHGRTPGARSYVYLDESKEIYKRLIVSEDNKTLLGAVL-  373 (847)
T ss_pred             HHHHHhcCCC-cCCCCccc--ceEEEECCcc----eEecccccCCCCCceeEEEEcCCCCEEEEEEEECCCCEEEEEEE-
Confidence            9999999753 34433221  2222222211    3344532221      12233333568888885  469999997 


Q ss_pred             cCChHHhHHHHHHHhCCCCCC
Q 012165          422 SGSPEEFQLLPTLARSQPFVD  442 (469)
Q Consensus       422 ~~~~~~~~~~~~~~~~~~~~~  442 (469)
                      .|+......+..++..+..+.
T Consensus       374 vGd~~~~~~l~~~~~~~~~l~  394 (847)
T PRK14989        374 VGDTSDYGNLLQLVLNAIELP  394 (847)
T ss_pred             ECCHHHHHHHHHHHHcCCCCc
Confidence            677777788888776665543

>TIGR02374 nitri_red_nirB nitrite reductase [NAD(P)H], large subunit

Probab=100.00  E-value=6.5e-46  Score=397.05  Aligned_cols=358  Identities=22%  Similarity=0.362  Sum_probs=290.4

Q ss_pred             EEEEcCcHHHHHHHHHHHHcCCCCCcEEEEcCCCCCCCCCCCCcccccCCCCCCCCCCCCCccccCCCCCCCCHhHHHHC
Q 012165           54 FVIVGGGNAAGYAARTFVEHGMADGRLCIVSKEAYAPYERPALTKGYLFPLDKKPARLPGFHTCVGSGGERQTPEWYKEK  133 (469)
Q Consensus        54 vvIIGgG~AGl~aA~~L~~~g~~~~~V~vie~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  133 (469)
                      |||||||+||+++|.+|++.+..+.+||||+++++++|.++.++. ++... ....++           .....+|++++
T Consensus         1 iVIIG~G~AG~~aa~~l~~~~~~~~~Itvi~~e~~~~y~r~~L~~-~l~g~-~~~~~l-----------~~~~~~~~~~~   67 (785)
T TIGR02374         1 LVLVGNGMAGHRCIEEVLKLNRHMFEITIFGEEPHPNYNRILLSS-VLQGE-ADLDDI-----------TLNSKDWYEKH   67 (785)
T ss_pred             CEEECCCHHHHHHHHHHHhcCCCCCeEEEEeCCCCCCcccccccH-HHCCC-CCHHHc-----------cCCCHHHHHHC
Confidence            699999999999999999986435699999999999999998876 44321 111222           23467889999


Q ss_pred             CcEEEeCCcEEEEeCCCcEEEeCCCeEEEeccEEeccCCCCCcCCCCCCCCcCcEEEecCHHHHHHHHHhhhcCCeEEEE
Q 012165          134 GIEMIYQDPVTSIDIEKQTLITNSGKLLKYGSLIVATGCTASRFPEKIGGYLPGVHYIRDVADADALISSLEKAKKVVVV  213 (469)
Q Consensus       134 ~i~~~~~~~v~~id~~~~~v~~~~g~~~~yd~lVlAtG~~~~~~~~~~g~~~~~v~~~~~~~~~~~~~~~~~~~~~vvVv  213 (469)
                      +++++++++|+.||+++++|++.+|.++.||+||||||+.|+ .|++||.+.++++.++++.+++.+++....+++++||
T Consensus        68 gv~~~~g~~V~~Id~~~k~V~~~~g~~~~yD~LVlATGs~p~-~p~ipG~~~~~v~~~rt~~d~~~i~~~~~~~k~vvVV  146 (785)
T TIGR02374        68 GITLYTGETVIQIDTDQKQVITDAGRTLSYDKLILATGSYPF-ILPIPGADKKGVYVFRTIEDLDAIMAMAQRFKKAAVI  146 (785)
T ss_pred             CCEEEcCCeEEEEECCCCEEEECCCcEeeCCEEEECCCCCcC-CCCCCCCCCCCEEEeCCHHHHHHHHHHhhcCCeEEEE
Confidence            999999999999999999999999999999999999999997 5667888888999999999999988888889999999


Q ss_pred             cCChHHHHHHHHHHhCCCeEe-------------------eeHHHHHHcCcEEEcCCeEEEEEeCCCCcEEEEEcCCCCE
Q 012165          214 GGGYIGMEVAAAAVGWKLDTT-------------------RYEQLYQQNGVKFVKGASIKNLEAGSDGRVAAVKLEDGST  274 (469)
Q Consensus       214 G~G~~g~e~A~~l~~~g~~v~-------------------~~~~~l~~~gV~~~~~~~v~~i~~~~~~~v~~v~~~~g~~  274 (469)
                      |+|++|+|+|..|+++|.+++                   .+.+.+++.||++++++.++++..  ++.+..|.++||++
T Consensus       147 GgG~~GlE~A~~L~~~G~~Vtvv~~~~~ll~~~ld~~~~~~l~~~l~~~GV~v~~~~~v~~i~~--~~~~~~v~~~dG~~  224 (785)
T TIGR02374       147 GGGLLGLEAAVGLQNLGMDVSVIHHAPGLMAKQLDQTAGRLLQRELEQKGLTFLLEKDTVEIVG--ATKADRIRFKDGSS  224 (785)
T ss_pred             CCCHHHHHHHHHHHhcCCeEEEEccCCchhhhhcCHHHHHHHHHHHHHcCCEEEeCCceEEEEc--CCceEEEEECCCCE
Confidence            999999999999999999987                   345678899999999999999973  44556788999999


Q ss_pred             EeCCEEEEccCCccCCchhhhcCCcccCCCEEeCCCCCCCCCceEEeccccccCCccCCcccccchHHHHHHHHHHHHHH
Q 012165          275 IDADTIVIGIGAKPTVSPFERVGLNSSVGGIQVDGQFRTRMPGIFAIGDVAAFPLKMYDRTARVEHVDHARQSAQHCIKA  354 (469)
Q Consensus       275 i~~D~vi~a~G~~p~~~~~~~~gl~~~~g~i~Vd~~~~t~~~~Vfa~GD~a~~~~~~~~~~~~~~~~~~A~~~a~~~a~~  354 (469)
                      +++|+||+++|.+|+++++++++++.+ ++|.||++|||++|||||+|||+..+...++      .+..|..||+.+|.|
T Consensus       225 i~~D~Vi~a~G~~Pn~~la~~~gl~~~-ggI~Vd~~~~Ts~p~IyA~GD~a~~~~~~~g------l~~~a~~qa~vaA~n  297 (785)
T TIGR02374       225 LEADLIVMAAGIRPNDELAVSAGIKVN-RGIIVNDSMQTSDPDIYAVGECAEHNGRVYG------LVAPLYEQAKVLADH  297 (785)
T ss_pred             EEcCEEEECCCCCcCcHHHHhcCCccC-CCEEECCCcccCCCCEEEeeecceeCCcccc------cHHHHHHHHHHHHHH
Confidence            999999999999999999999999887 7899999999999999999999987654433      466789999999999


Q ss_pred             HhcCCCCCCCCCCceee-ecccccCCCcceeeEEeecCCC-----cEEEEccCCCcEEEEEEeCCEEEEEEeecCChHHh
Q 012165          355 LLSAQTHTYDYLPYFYS-RVFEYEGSPRKVWWQFFGDNVG-----ETIEIGNFDPKIATFWIDSGKLKGVLVESGSPEEF  428 (469)
Q Consensus       355 i~~~~~~~~~~~p~~~~-~~~~~~g~~~~~~~~~~G~~~~-----~~~~~~~~~~~~~~~~~~~~~l~g~~~~~~~~~~~  428 (469)
                      |++....+|...+.... ..+++.       +..+|....     ...........|.++++++++|+|+++ .++....
T Consensus       298 i~g~~~~~~~~~~~~~~lk~~g~~-------v~s~G~~~~~~~~~~~~~~d~~~~~y~kl~~~~~rLlGavl-vgd~~~~  369 (785)
T TIGR02374       298 ICGVECEEYEGSDLSAKLKLLGVD-------VWSAGDAQETERTTSIKIYDEQKGIYKKLVLSDDKLLGAVL-FGDTSDY  369 (785)
T ss_pred             hcCCCCcCCCCCccceEEEECCcc-------eEecccCCCCCCcEEEEEEcCCCCEEEEEEEECCEEEEEEE-ECCHHHH
Confidence            99754356655443211 233322       344554321     112222223458899999999999997 7788889


Q ss_pred             HHHHHHHhCCCCCC
Q 012165          429 QLLPTLARSQPFVD  442 (469)
Q Consensus       429 ~~~~~~~~~~~~~~  442 (469)
                      ..+.++++++..+.
T Consensus       370 ~~L~~li~~~~~l~  383 (785)
T TIGR02374       370 GRLLDMVLKQADIS  383 (785)
T ss_pred             HHHHHHHHcCCCCC
Confidence            99999998776554

>PRK04965 NADH:flavorubredoxin oxidoreductase; Provisional

Probab=100.00  E-value=9.7e-46  Score=367.58  Aligned_cols=343  Identities=23%  Similarity=0.358  Sum_probs=268.9

Q ss_pred             CCcEEEEcCcHHHHHHHHHHHHcCCCCCcEEEEcCCCCCCCCCCCCcccccCCCCCCCCCCCCCccccCCCCCCCCHhHH
Q 012165           51 NREFVIVGGGNAAGYAARTFVEHGMADGRLCIVSKEAYAPYERPALTKGYLFPLDKKPARLPGFHTCVGSGGERQTPEWY  130 (469)
Q Consensus        51 ~~~vvIIGgG~AGl~aA~~L~~~g~~~~~V~vie~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  130 (469)
                      +++|||||||+||+++|..|++.+. +.+||||+++++.+|.+|.+++.+. . .....++.          .....+++
T Consensus         2 ~~~vvIiG~G~AG~~~a~~lr~~~~-~~~Itvi~~~~~~~y~~~~l~~~~~-~-~~~~~~~~----------~~~~~~~~   68 (377)
T PRK04965          2 SNGIVIIGSGFAARQLVKNIRKQDA-HIPITLITADSGDEYNKPDLSHVFS-Q-GQRADDLT----------RQSAGEFA   68 (377)
T ss_pred             CCCEEEECCcHHHHHHHHHHHhhCc-CCCEEEEeCCCCCCcCcCcCcHHHh-C-CCCHHHhh----------cCCHHHHH
Confidence            4689999999999999999999875 7899999999999999998876332 2 22222210          11245677


Q ss_pred             HHCCcEEEeCCcEEEEeCCCcEEEeCCCeEEEeccEEeccCCCCCcCCCCCCCCcCcEEEecCHHHHHHHHHhhhcCCeE
Q 012165          131 KEKGIEMIYQDPVTSIDIEKQTLITNSGKLLKYGSLIVATGCTASRFPEKIGGYLPGVHYIRDVADADALISSLEKAKKV  210 (469)
Q Consensus       131 ~~~~i~~~~~~~v~~id~~~~~v~~~~g~~~~yd~lVlAtG~~~~~~~~~~g~~~~~v~~~~~~~~~~~~~~~~~~~~~v  210 (469)
                      ++++++++.+++|+++|+++++|++ ++..+.||+||||||+.|. .|+++|...  ++.++++.+...+...+..++++
T Consensus        69 ~~~gv~~~~~~~V~~id~~~~~v~~-~~~~~~yd~LVlATG~~~~-~p~i~G~~~--v~~~~~~~~~~~~~~~~~~~~~v  144 (377)
T PRK04965         69 EQFNLRLFPHTWVTDIDAEAQVVKS-QGNQWQYDKLVLATGASAF-VPPIPGREL--MLTLNSQQEYRAAETQLRDAQRV  144 (377)
T ss_pred             HhCCCEEECCCEEEEEECCCCEEEE-CCeEEeCCEEEECCCCCCC-CCCCCCCce--EEEECCHHHHHHHHHHhhcCCeE
Confidence            8899999998899999999888887 4667999999999999987 466666433  77888888888887777788999


Q ss_pred             EEEcCChHHHHHHHHHHhCCCeEe-------------------eeHHHHHHcCcEEEcCCeEEEEEeCCCCcEEEEEcCC
Q 012165          211 VVVGGGYIGMEVAAAAVGWKLDTT-------------------RYEQLYQQNGVKFVKGASIKNLEAGSDGRVAAVKLED  271 (469)
Q Consensus       211 vVvG~G~~g~e~A~~l~~~g~~v~-------------------~~~~~l~~~gV~~~~~~~v~~i~~~~~~~v~~v~~~~  271 (469)
                      +|||+|++|+|+|..|.+++.+++                   .+.+.+++.||++++++.+++++.+ ++. ..+.+.+
T Consensus       145 vViGgG~~g~e~A~~L~~~g~~Vtlv~~~~~~l~~~~~~~~~~~l~~~l~~~gV~i~~~~~v~~i~~~-~~~-~~v~~~~  222 (377)
T PRK04965        145 LVVGGGLIGTELAMDLCRAGKAVTLVDNAASLLASLMPPEVSSRLQHRLTEMGVHLLLKSQLQGLEKT-DSG-IRATLDS  222 (377)
T ss_pred             EEECCCHHHHHHHHHHHhcCCeEEEEecCCcccchhCCHHHHHHHHHHHHhCCCEEEECCeEEEEEcc-CCE-EEEEEcC
Confidence            999999999999999999998887                   3456788899999999999999854 223 3577889


Q ss_pred             CCEEeCCEEEEccCCccCCchhhhcCCcccCCCEEeCCCCCCCCCceEEeccccccCCccCCcccccchHHHHHHHHHHH
Q 012165          272 GSTIDADTIVIGIGAKPTVSPFERVGLNSSVGGIQVDGQFRTRMPGIFAIGDVAAFPLKMYDRTARVEHVDHARQSAQHC  351 (469)
Q Consensus       272 g~~i~~D~vi~a~G~~p~~~~~~~~gl~~~~g~i~Vd~~~~t~~~~Vfa~GD~a~~~~~~~~~~~~~~~~~~A~~~a~~~  351 (469)
                      |+++++|.||+|+|.+|++.+++.+|+..++ ++.||++|||+.|||||+|||+..+...      ...++.|..||+.+
T Consensus       223 g~~i~~D~vI~a~G~~p~~~l~~~~gl~~~~-gi~vd~~l~ts~~~VyA~GD~a~~~~~~------~~~~~~a~~~g~~~  295 (377)
T PRK04965        223 GRSIEVDAVIAAAGLRPNTALARRAGLAVNR-GIVVDSYLQTSAPDIYALGDCAEINGQV------LPFLQPIQLSAMAL  295 (377)
T ss_pred             CcEEECCEEEECcCCCcchHHHHHCCCCcCC-CEEECCCcccCCCCEEEeeecEeECCce------eehHHHHHHHHHHH
Confidence            9999999999999999999999999998875 5999999999999999999999875422      23566789999999


Q ss_pred             HHHHhcCCCCCCCCCCceee-ecccccCCCcceeeEEeecCCC---cEEEEccCCCcEEEEEEeCCEEEEEEeecCChHH
Q 012165          352 IKALLSAQTHTYDYLPYFYS-RVFEYEGSPRKVWWQFFGDNVG---ETIEIGNFDPKIATFWIDSGKLKGVLVESGSPEE  427 (469)
Q Consensus       352 a~~i~~~~~~~~~~~p~~~~-~~~~~~g~~~~~~~~~~G~~~~---~~~~~~~~~~~~~~~~~~~~~l~g~~~~~~~~~~  427 (469)
                      |+||++. ..+|...+..++ ..++++       +..+|...+   .+....+.+..|.++++++|+|+|++++++....
T Consensus       296 a~n~~g~-~~~~~~~~~~~~~~~~~~~-------~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~~~~g~~~~~  367 (377)
T PRK04965        296 AKNLLGQ-NTPLKLPAMLVKVKTPELP-------LQLAGETQRQDLRWQINAESQGMVAKGVDEAGQLRAFVVSEDRMKE  367 (377)
T ss_pred             HHHhcCC-CcccccCCccEEEecCcee-------eEECCCCCCCCceEEEEeCCCCeEEEEEccCCcEEEEEEEChhHHH
Confidence            9999974 345665444333 234432       666776543   1222233335588899999999999985554543

>COG1251 NirB NAD(P)H-nitrite reductase [Energy production and conversion]

Probab=100.00  E-value=1.6e-46  Score=373.85  Aligned_cols=362  Identities=24%  Similarity=0.389  Sum_probs=305.5

Q ss_pred             CCCcEEEEcCcHHHHHHHHHHHHcCCCCCcEEEEcCCCCCCCCCCCCcccccCCCCCCCCCCCCCccccCCCCCCCCHhH
Q 012165           50 ENREFVIVGGGNAAGYAARTFVEHGMADGRLCIVSKEAYAPYERPALTKGYLFPLDKKPARLPGFHTCVGSGGERQTPEW  129 (469)
Q Consensus        50 ~~~~vvIIGgG~AGl~aA~~L~~~g~~~~~V~vie~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  129 (469)
                      ...++||||.|+||..+..++.+......+||++..+++..|+|..|+. ++.+. ....++           .....+|
T Consensus         2 ~k~klvvvGnGmag~r~iEell~~~~~~~~iTvfg~Ep~~nY~Ri~Ls~-vl~~~-~~~edi-----------~l~~~dw   68 (793)
T COG1251           2 KKQKLVIIGNGMAGHRTIEELLESAPDLYDITVFGEEPRPNYNRILLSS-VLAGE-KTAEDI-----------SLNRNDW   68 (793)
T ss_pred             CceeEEEEecccchhhHHHHHHhcCcccceEEEeccCCCccccceeecc-ccCCC-ccHHHH-----------hccchhh
Confidence            3468999999999999999999965545799999999999999999987 44332 222222           2456799


Q ss_pred             HHHCCcEEEeCCcEEEEeCCCcEEEeCCCeEEEeccEEeccCCCCCcCCCCCCCCcCcEEEecCHHHHHHHHHhhhcCCe
Q 012165          130 YKEKGIEMIYQDPVTSIDIEKQTLITNSGKLLKYGSLIVATGCTASRFPEKIGGYLPGVHYIRDVADADALISSLEKAKK  209 (469)
Q Consensus       130 ~~~~~i~~~~~~~v~~id~~~~~v~~~~g~~~~yd~lVlAtG~~~~~~~~~~g~~~~~v~~~~~~~~~~~~~~~~~~~~~  209 (469)
                      |++++++++.+..|+.||++++.|+++.|.++.||+||+||||.|+.+| +||.+.++++.++++.|...+....+..++
T Consensus        69 y~~~~i~L~~~~~v~~idr~~k~V~t~~g~~~~YDkLilATGS~pfi~P-iPG~~~~~v~~~R~i~D~~am~~~ar~~~~  147 (793)
T COG1251          69 YEENGITLYTGEKVIQIDRANKVVTTDAGRTVSYDKLIIATGSYPFILP-IPGSDLPGVFVYRTIDDVEAMLDCARNKKK  147 (793)
T ss_pred             HHHcCcEEEcCCeeEEeccCcceEEccCCcEeecceeEEecCccccccC-CCCCCCCCeeEEecHHHHHHHHHHHhccCC
Confidence            9999999999999999999999999999999999999999999998555 899999999999999999998888667788


Q ss_pred             EEEEcCChHHHHHHHHHHhCCCeEe-------------------eeHHHHHHcCcEEEcCCeEEEEEeCCCCcEEEEEcC
Q 012165          210 VVVVGGGYIGMEVAAAAVGWKLDTT-------------------RYEQLYQQNGVKFVKGASIKNLEAGSDGRVAAVKLE  270 (469)
Q Consensus       210 vvVvG~G~~g~e~A~~l~~~g~~v~-------------------~~~~~l~~~gV~~~~~~~v~~i~~~~~~~v~~v~~~  270 (469)
                      .+|||||..|+|.|..|...|.+++                   .++..+++.|++++++...+++..  ++.+.++.++
T Consensus       148 avVIGGGLLGlEaA~~L~~~Gm~~~Vvh~~~~lMerQLD~~ag~lL~~~le~~Gi~~~l~~~t~ei~g--~~~~~~vr~~  225 (793)
T COG1251         148 AVVIGGGLLGLEAARGLKDLGMEVTVVHIAPTLMERQLDRTAGRLLRRKLEDLGIKVLLEKNTEEIVG--EDKVEGVRFA  225 (793)
T ss_pred             cEEEccchhhhHHHHHHHhCCCceEEEeecchHHHHhhhhHHHHHHHHHHHhhcceeecccchhhhhc--CcceeeEeec
Confidence            8999999999999999999999987                   678889999999999998888873  6777899999


Q ss_pred             CCCEEeCCEEEEccCCccCCchhhhcCCcccCCCEEeCCCCCCCCCceEEeccccccCCccCCcccccchHHHHHHHHHH
Q 012165          271 DGSTIDADTIVIGIGAKPTVSPFERVGLNSSVGGIQVDGQFRTRMPGIFAIGDVAAFPLKMYDRTARVEHVDHARQSAQH  350 (469)
Q Consensus       271 ~g~~i~~D~vi~a~G~~p~~~~~~~~gl~~~~g~i~Vd~~~~t~~~~Vfa~GD~a~~~~~~~~~~~~~~~~~~A~~~a~~  350 (469)
                      ||+.+++|+||+|+|.+||.++...+|+..++ +|+||++|||++|+|||+|+|+.+....+|.      +.-+..|++.
T Consensus       226 DG~~i~ad~VV~a~GIrPn~ela~~aGlavnr-GIvvnd~mqTsdpdIYAvGEcae~~g~~yGL------VaP~yeq~~v  298 (793)
T COG1251         226 DGTEIPADLVVMAVGIRPNDELAKEAGLAVNR-GIVVNDYMQTSDPDIYAVGECAEHRGKVYGL------VAPLYEQAKV  298 (793)
T ss_pred             CCCcccceeEEEecccccccHhHHhcCcCcCC-CeeecccccccCCCeeehhhHHHhcCcccee------hhHHHHHHHH
Confidence            99999999999999999999999999999986 9999999999999999999999988777664      3448899999


Q ss_pred             HHHHHhcCCCCCCCC-CCceeeecccccCCCcceeeEEeecCC----C-cEEEEccCCCcEEEEEEeCCEEEEEEeecCC
Q 012165          351 CIKALLSAQTHTYDY-LPYFYSRVFEYEGSPRKVWWQFFGDNV----G-ETIEIGNFDPKIATFWIDSGKLKGVLVESGS  424 (469)
Q Consensus       351 ~a~~i~~~~~~~~~~-~p~~~~~~~~~~g~~~~~~~~~~G~~~----~-~~~~~~~~~~~~~~~~~~~~~l~g~~~~~~~  424 (469)
                      +|.++++.....|.. ++   +.....+|..    +...|+..    . .+++.......|+++.+++|+|+|+++ .|+
T Consensus       299 ~a~hl~~~~~~~y~gsv~---stkLKv~Gvd----l~S~GD~~e~~~~~~iv~~D~~~~iYKrlvL~dd~IvgavL-~GD  370 (793)
T COG1251         299 LADHLCGGEAEAYEGSVT---STKLKVSGVD----VFSAGDFQETEGAESIVFRDEQRGIYKKLVLKDDKIVGAVL-YGD  370 (793)
T ss_pred             HHHHhccCcccccccccc---hhhhcccccc----eeeccchhhcCCCceEEEecccccceeEEEEeCCeEEEEEE-Eee
Confidence            999999865544533 22   2445555533    33445432    1 244454455679999999999999997 899


Q ss_pred             hHHhHHHHHHHhCCCCCC
Q 012165          425 PEEFQLLPTLARSQPFVD  442 (469)
Q Consensus       425 ~~~~~~~~~~~~~~~~~~  442 (469)
                      ..+-..|..|+..+..++
T Consensus       371 t~d~~~l~~li~~~~~~s  388 (793)
T COG1251         371 TSDGGWLLDLILKGADIS  388 (793)
T ss_pred             cccchHHHHHHhcCCCcc
Confidence            999999999998888775

>PRK13512 coenzyme A disulfide reductase; Provisional

Probab=100.00  E-value=2.7e-43  Score=355.85  Aligned_cols=381  Identities=20%  Similarity=0.286  Sum_probs=268.1

Q ss_pred             CcEEEEcCcHHHHHHHHHHHHcCCCCCcEEEEcCCCCCCCCCCCCcccccCCCCCCCCCCCCCccccCCCCCCCCHhHHH
Q 012165           52 REFVIVGGGNAAGYAARTFVEHGMADGRLCIVSKEAYAPYERPALTKGYLFPLDKKPARLPGFHTCVGSGGERQTPEWYK  131 (469)
Q Consensus        52 ~~vvIIGgG~AGl~aA~~L~~~g~~~~~V~vie~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  131 (469)
                      .+|||||||+||++||.+|++.+. +.+|+|||++++++|.++.++. ++..........          .......+++
T Consensus         2 ~~VVIIGgG~aG~~aA~~l~~~~~-~~~I~li~~~~~~~~~~~~lp~-~~~~~~~~~~~~----------~~~~~~~~~~   69 (438)
T PRK13512          2 PKIIVVGAVAGGATCASQIRRLDK-ESDIIIFEKDRDMSFANCALPY-YIGEVVEDRKYA----------LAYTPEKFYD   69 (438)
T ss_pred             CeEEEECCcHHHHHHHHHHHhhCC-CCCEEEEECCCCcccccCCcch-hhcCccCCHHHc----------ccCCHHHHHH
Confidence            489999999999999999998864 7899999999999888765543 221111000000          0012234557


Q ss_pred             HCCcEEEeCCcEEEEeCCCcEEEeCCC---e--EEEeccEEeccCCCCCcCCCCCCCCcCcEEEecCHHHHHHHHHhhh-
Q 012165          132 EKGIEMIYQDPVTSIDIEKQTLITNSG---K--LLKYGSLIVATGCTASRFPEKIGGYLPGVHYIRDVADADALISSLE-  205 (469)
Q Consensus       132 ~~~i~~~~~~~v~~id~~~~~v~~~~g---~--~~~yd~lVlAtG~~~~~~~~~~g~~~~~v~~~~~~~~~~~~~~~~~-  205 (469)
                      +.+++++.+++|++||+++++|.+.++   +  ++.||+||||||++|+. |..   ..+++++++++.+...+.+.+. 
T Consensus        70 ~~~i~v~~~~~V~~Id~~~~~v~~~~~~~~~~~~~~yd~lviAtGs~~~~-~~~---~~~~~~~~~~~~~~~~l~~~l~~  145 (438)
T PRK13512         70 RKQITVKTYHEVIAINDERQTVTVLNRKTNEQFEESYDKLILSPGASANS-LGF---ESDITFTLRNLEDTDAIDQFIKA  145 (438)
T ss_pred             hCCCEEEeCCEEEEEECCCCEEEEEECCCCcEEeeecCEEEECCCCCCCC-CCC---CCCCeEEecCHHHHHHHHHHHhh
Confidence            789999988899999999999888653   2  47899999999999864 432   2466788888888877766543 


Q ss_pred             -cCCeEEEEcCChHHHHHHHHHHhCCCeEe------------------eeHHHHHHcCcEEEcCCeEEEEEeCCCCcEEE
Q 012165          206 -KAKKVVVVGGGYIGMEVAAAAVGWKLDTT------------------RYEQLYQQNGVKFVKGASIKNLEAGSDGRVAA  266 (469)
Q Consensus       206 -~~~~vvVvG~G~~g~e~A~~l~~~g~~v~------------------~~~~~l~~~gV~~~~~~~v~~i~~~~~~~v~~  266 (469)
                       .+++++|||+|++|+|+|..|+++|.+|+                  .+.+.+++.||++++++++++++.   .   .
T Consensus       146 ~~~~~vvViGgG~ig~E~A~~l~~~g~~Vtli~~~~~l~~~~d~~~~~~l~~~l~~~gI~i~~~~~v~~i~~---~---~  219 (438)
T PRK13512        146 NQVDKALVVGAGYISLEVLENLYERGLHPTLIHRSDKINKLMDADMNQPILDELDKREIPYRLNEEIDAING---N---E  219 (438)
T ss_pred             cCCCEEEEECCCHHHHHHHHHHHhCCCcEEEEecccccchhcCHHHHHHHHHHHHhcCCEEEECCeEEEEeC---C---E
Confidence             46899999999999999999999999988                  346778889999999999999973   1   4


Q ss_pred             EEcCCCCEEeCCEEEEccCCccCCchhhhcCCccc-CCCEEeCCCCCCCCCceEEeccccccCCccCCcccccchHHHHH
Q 012165          267 VKLEDGSTIDADTIVIGIGAKPTVSPFERVGLNSS-VGGIQVDGQFRTRMPGIFAIGDVAAFPLKMYDRTARVEHVDHAR  345 (469)
Q Consensus       267 v~~~~g~~i~~D~vi~a~G~~p~~~~~~~~gl~~~-~g~i~Vd~~~~t~~~~Vfa~GD~a~~~~~~~~~~~~~~~~~~A~  345 (469)
                      +++++|+++++|.|++++|++||++++++.|+..+ +|+|.||+++||++|||||+|||+..+....+..........|.
T Consensus       220 v~~~~g~~~~~D~vl~a~G~~pn~~~l~~~gl~~~~~G~i~Vd~~~~t~~~~IyA~GD~~~~~~~~~~~~~~~~la~~A~  299 (438)
T PRK13512        220 VTFKSGKVEHYDMIIEGVGTHPNSKFIESSNIKLDDKGFIPVNDKFETNVPNIYAIGDIITSHYRHVDLPASVPLAWGAH  299 (438)
T ss_pred             EEECCCCEEEeCEEEECcCCCcChHHHHhcCcccCCCCcEEECCCcccCCCCEEEeeeeEEeeeccCCCceecccchHHH
Confidence            67788889999999999999999999999998875 57799999999999999999999974322222211222344588


Q ss_pred             HHHHHHHHHHhcCCCCCC-CCCCceeeecccccCCCcceeeEEeecCCCc-------EEEE---------ccCCCcEEEE
Q 012165          346 QSAQHCIKALLSAQTHTY-DYLPYFYSRVFEYEGSPRKVWWQFFGDNVGE-------TIEI---------GNFDPKIATF  408 (469)
Q Consensus       346 ~~a~~~a~~i~~~~~~~~-~~~p~~~~~~~~~~g~~~~~~~~~~G~~~~~-------~~~~---------~~~~~~~~~~  408 (469)
                      .+|+.+|+||++....++ ...+..+...++.+       +..+|....+       ....         ......+.|+
T Consensus       300 ~~a~~~a~ni~g~~~~~~~~~~~~~~~~~~~~~-------ia~vGlte~~a~~~~~~~~~~~~~~~~~~~~~~~~g~~kl  372 (438)
T PRK13512        300 RAASIVAEQIAGNDTIEFKGFLGNNIVKFFDYT-------FASVGVKPNELKQFDYKMVEVTQGAHANYYPGNSPLHLRV  372 (438)
T ss_pred             HHHHHHHHHhcCCCccccCCcccceEEEEcCce-------EEeecCCHHHHccCCcEEEEEecCCcCCCcCCCceEEEEE
Confidence            899999999986432223 22222222333322       3334443211       0000         0011236677


Q ss_pred             EEe--CCEEEEEEeecCC-hHHh-HHHHHHHhCCCCCCh-hh--hcCCCcHH---HHHHHHHh
Q 012165          409 WID--SGKLKGVLVESGS-PEEF-QLLPTLARSQPFVDK-AK--LQQASSVE---EALEIARA  461 (469)
Q Consensus       409 ~~~--~~~l~g~~~~~~~-~~~~-~~~~~~~~~~~~~~~-~~--~~~~~~~~---~~~~~~~~  461 (469)
                      +++  +++|+|+++++.+ +.++ ..+..+++.+.+++. ..  +..||+++   +.+..|++
T Consensus       373 v~d~~~~~ilGa~~~g~~~a~e~i~~~~~ai~~~~t~~~l~~~~~~~~P~~~~~~~~~~~~~~  435 (438)
T PRK13512        373 YYDTSNRKILRAAAVGKEGADKRIDVLSMAMMNQLTVDELTEFEVAYAPPYSHPKDLINMIGY  435 (438)
T ss_pred             EEECCCCeEEEEEEEccccHHHHHHHHHHHHHcCCcHHHHhhcccccCCCCCccccHHHHHHH
Confidence            664  5999999987765 5554 445556788877763 22  34566555   55555544

>PRK09564 coenzyme A disulfide reductase; Reviewed

Probab=100.00  E-value=7.1e-43  Score=355.04  Aligned_cols=378  Identities=21%  Similarity=0.286  Sum_probs=271.5

Q ss_pred             cEEEEcCcHHHHHHHHHHHHcCCCCCcEEEEcCCCCCCCCCCCCcccccCCCCCCCCCCCCCccccCCCCCCCCHhHHHH
Q 012165           53 EFVIVGGGNAAGYAARTFVEHGMADGRLCIVSKEAYAPYERPALTKGYLFPLDKKPARLPGFHTCVGSGGERQTPEWYKE  132 (469)
Q Consensus        53 ~vvIIGgG~AGl~aA~~L~~~g~~~~~V~vie~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  132 (469)
                      +|||||||+||+++|.+|++.+. +.+|+|||+++++.|..+.++. ++........++           .....+++++
T Consensus         2 ~vvIIGgG~aGl~aA~~l~~~~~-~~~Vtli~~~~~~~~~~~~~~~-~~~~~~~~~~~~-----------~~~~~~~~~~   68 (444)
T PRK09564          2 KIIIIGGTAAGMSAAAKAKRLNK-ELEITVYEKTDIVSFGACGLPY-FVGGFFDDPNTM-----------IARTPEEFIK   68 (444)
T ss_pred             eEEEECCcHHHHHHHHHHHHHCC-CCcEEEEECCCcceeecCCCce-EeccccCCHHHh-----------hcCCHHHHHH
Confidence            79999999999999999999874 6799999999988776544432 221111111111           2345677888


Q ss_pred             CCcEEEeCCcEEEEeCCCcEEEeCC---CeEEE--eccEEeccCCCCCcCCCCCCCCcCcEEEecCHHHHHHHHHhhh--
Q 012165          133 KGIEMIYQDPVTSIDIEKQTLITNS---GKLLK--YGSLIVATGCTASRFPEKIGGYLPGVHYIRDVADADALISSLE--  205 (469)
Q Consensus       133 ~~i~~~~~~~v~~id~~~~~v~~~~---g~~~~--yd~lVlAtG~~~~~~~~~~g~~~~~v~~~~~~~~~~~~~~~~~--  205 (469)
                      .+++++.+++|+.+|++++.|++.+   +..+.  ||+||||||++|. .|.++|.+.++++++.+..+...+.+.+.  
T Consensus        69 ~gv~~~~~~~V~~id~~~~~v~~~~~~~~~~~~~~yd~lviAtG~~~~-~~~i~g~~~~~v~~~~~~~~~~~l~~~l~~~  147 (444)
T PRK09564         69 SGIDVKTEHEVVKVDAKNKTITVKNLKTGSIFNDTYDKLMIATGARPI-IPPIKNINLENVYTLKSMEDGLALKELLKDE  147 (444)
T ss_pred             CCCeEEecCEEEEEECCCCEEEEEECCCCCEEEecCCEEEECCCCCCC-CCCCCCcCCCCEEEECCHHHHHHHHHHHhhc
Confidence            9999998889999999999888754   55666  9999999999987 46677776778888888877777766553  


Q ss_pred             cCCeEEEEcCChHHHHHHHHHHhCCCeEe-------------------eeHHHHHHcCcEEEcCCeEEEEEeCCCCcEEE
Q 012165          206 KAKKVVVVGGGYIGMEVAAAAVGWKLDTT-------------------RYEQLYQQNGVKFVKGASIKNLEAGSDGRVAA  266 (469)
Q Consensus       206 ~~~~vvVvG~G~~g~e~A~~l~~~g~~v~-------------------~~~~~l~~~gV~~~~~~~v~~i~~~~~~~v~~  266 (469)
                      .+++++|||+|++|+|+|..+.+.|.+++                   .+.+.+++.||++++++++++++.  ++.+..
T Consensus       148 ~~~~vvVvGgG~~g~e~A~~l~~~g~~Vtli~~~~~~l~~~~~~~~~~~l~~~l~~~gI~v~~~~~v~~i~~--~~~~~~  225 (444)
T PRK09564        148 EIKNIVIIGAGFIGLEAVEAAKHLGKNVRIIQLEDRILPDSFDKEITDVMEEELRENGVELHLNEFVKSLIG--EDKVEG  225 (444)
T ss_pred             CCCEEEEECCCHHHHHHHHHHHhcCCcEEEEeCCcccCchhcCHHHHHHHHHHHHHCCCEEEcCCEEEEEec--CCcEEE
Confidence            46899999999999999999999998887                   344667889999999999999963  344444


Q ss_pred             EEcCCCCEEeCCEEEEccCCccCCchhhhcCCccc-CCCEEeCCCCCCCCCceEEeccccccCCccCCcccccchHHHHH
Q 012165          267 VKLEDGSTIDADTIVIGIGAKPTVSPFERVGLNSS-VGGIQVDGQFRTRMPGIFAIGDVAAFPLKMYDRTARVEHVDHAR  345 (469)
Q Consensus       267 v~~~~g~~i~~D~vi~a~G~~p~~~~~~~~gl~~~-~g~i~Vd~~~~t~~~~Vfa~GD~a~~~~~~~~~~~~~~~~~~A~  345 (469)
                      +.++ +.++++|.+|+|+|++|++++++++|++.+ +|+|.||+++||++|||||+|||+..+....+.......+..|.
T Consensus       226 v~~~-~~~i~~d~vi~a~G~~p~~~~l~~~gl~~~~~g~i~vd~~~~t~~~~IyA~GD~~~~~~~~~~~~~~~~~~~~A~  304 (444)
T PRK09564        226 VVTD-KGEYEADVVIVATGVKPNTEFLEDTGLKTLKNGAIIVDEYGETSIENIYAAGDCATIYNIVSNKNVYVPLATTAN  304 (444)
T ss_pred             EEeC-CCEEEcCEEEECcCCCcCHHHHHhcCccccCCCCEEECCCcccCCCCEEEeeeEEEEEeccCCCeeeccchHHHH
Confidence            5554 447999999999999999999999998764 57899999999999999999999987554333333344677899


Q ss_pred             HHHHHHHHHHhcCCCCCCCC-CCceeeecccccCCCcceeeEEeecCCCc-------E--EEEc---------cCCCcEE
Q 012165          346 QSAQHCIKALLSAQTHTYDY-LPYFYSRVFEYEGSPRKVWWQFFGDNVGE-------T--IEIG---------NFDPKIA  406 (469)
Q Consensus       346 ~~a~~~a~~i~~~~~~~~~~-~p~~~~~~~~~~g~~~~~~~~~~G~~~~~-------~--~~~~---------~~~~~~~  406 (469)
                      .||+.+|+||++.. ..++. .+......++++       +..+|....+       .  ....         +....|.
T Consensus       305 ~qg~~~a~ni~g~~-~~~~~~~~~~~~~~~~~~-------~a~vG~t~~~a~~~g~~~~~~~~~~~~~~~~~~~~~~~~~  376 (444)
T PRK09564        305 KLGRMVGENLAGRH-VSFKGTLGSACIKVLDLE-------AARTGLTEEEAKKLGIDYKTVFIKDKNHTNYYPGQEDLYV  376 (444)
T ss_pred             HHHHHHHHHhcCCC-CCCCCcccceEEEECCEE-------EEEecCCHHHHHHCCCCeEEEEEecCCCCCcCCCCceEEE
Confidence            99999999999743 22221 111111122221       4445543211       0  1010         1112367


Q ss_pred             EEEE--eCCEEEEEEeecCC-h-HHhHHHHHHHhCCCCCChhh-h--cCCCcHHHH
Q 012165          407 TFWI--DSGKLKGVLVESGS-P-EEFQLLPTLARSQPFVDKAK-L--QQASSVEEA  455 (469)
Q Consensus       407 ~~~~--~~~~l~g~~~~~~~-~-~~~~~~~~~~~~~~~~~~~~-~--~~~~~~~~~  455 (469)
                      |+.+  ++++|+|+++++.. + +.+..+..+|+.+.+++.-. +  ..+|++.|+
T Consensus       377 klv~~~~~~~ilG~~~~g~~~~~~~i~~~~~~i~~~~~~~~~~~~~~~~~p~~~~~  432 (444)
T PRK09564        377 KLIYEADTKVILGGQIIGKKGAVLRIDALAVAIYAKLTTQELGMMDFCYAPPFART  432 (444)
T ss_pred             EEEEECCCCeEEeEEEEcCccHHHHHHHHHHHHHCCCCHHHHhhcccccCCCCCCC
Confidence            7776  36999999986654 5 34555666788888776322 2  234777653

>COG1249 Lpd Pyruvate/2-oxoglutarate dehydrogenase complex, dihydrolipoamide dehydrogenase (E3) component, and related enzymes [Energy production and conversion]

Probab=100.00  E-value=6.3e-41  Score=332.13  Aligned_cols=378  Identities=24%  Similarity=0.353  Sum_probs=263.7

Q ss_pred             CCCCcEEEEcCcHHHHHHHHHHHHcCCCCCcEEEEcCCCCCCCC----CCCCcccccCCC------CC----C-------
Q 012165           49 NENREFVIVGGGNAAGYAARTFVEHGMADGRLCIVSKEAYAPYE----RPALTKGYLFPL------DK----K-------  107 (469)
Q Consensus        49 ~~~~~vvIIGgG~AGl~aA~~L~~~g~~~~~V~vie~~~~~~~~----~~~l~~~~~~~~------~~----~-------  107 (469)
                      +++||+||||+|+||..||.++++.|.   ++.+||+...++..    -+--+|.++...      .+    .       
T Consensus         2 ~~~yDvvVIG~GpaG~~aA~raa~~G~---kvalvE~~~~lGGtCln~GCIPsK~Ll~~a~~~~~~~~~~~~~Gi~~~~~   78 (454)
T COG1249           2 MKEYDVVVIGAGPAGYVAAIRAAQLGL---KVALVEKGERLGGTCLNVGCIPSKALLHAAEVIEEARHAAKEYGISAEVP   78 (454)
T ss_pred             CccccEEEECCCHHHHHHHHHHHhCCC---CEEEEeecCCcCceEEeeCccccHHHHHHHHHHHHHhhcccccceecCCC
Confidence            457999999999999999999999997   39999999533211    011122211100      00    0       


Q ss_pred             CCCCCCCccc---cCCCCCCCCHhHHHHCCcEEEeCCcEEEEeCCCcEEEeCC--CeEEEeccEEeccCCCCCcCCCCCC
Q 012165          108 PARLPGFHTC---VGSGGERQTPEWYKEKGIEMIYQDPVTSIDIEKQTLITNS--GKLLKYGSLIVATGCTASRFPEKIG  182 (469)
Q Consensus       108 ~~~~~~~~~~---~~~~~~~~~~~~~~~~~i~~~~~~~v~~id~~~~~v~~~~--g~~~~yd~lVlAtG~~~~~~~~~~g  182 (469)
                      ..++..+...   ...........+++.++++++.+ ...-++  .++|.+.+  .+++++|++|||||++|+. |+.++
T Consensus        79 ~id~~~~~~~k~~v~~~~~~~~~~l~~~~~V~vi~G-~a~f~~--~~~v~V~~~~~~~~~a~~iiIATGS~p~~-~~~~~  154 (454)
T COG1249          79 KIDFEKLLARKDKVVRLLTGGVEGLLKKNGVDVIRG-EARFVD--PHTVEVTGEDKETITADNIIIATGSRPRI-PPGPG  154 (454)
T ss_pred             CcCHHHHHHHHHHHHHHHhhhHHHHHhhCCCEEEEE-EEEECC--CCEEEEcCCCceEEEeCEEEEcCCCCCcC-CCCCC
Confidence            0011000000   00000111233456679999987 555444  56666665  4789999999999999985 44444


Q ss_pred             CCcCcEEEecCHHHHHHHHHhhhcCCeEEEEcCChHHHHHHHHHHhCCCeEe------------------eeHHHHHHcC
Q 012165          183 GYLPGVHYIRDVADADALISSLEKAKKVVVVGGGYIGMEVAAAAVGWKLDTT------------------RYEQLYQQNG  244 (469)
Q Consensus       183 ~~~~~v~~~~~~~~~~~~~~~~~~~~~vvVvG~G~~g~e~A~~l~~~g~~v~------------------~~~~~l~~~g  244 (469)
                      .+...+.+      .+........+++++|||||++|+|+|..++++|.+|+                  .+.+.|++.|
T Consensus       155 ~~~~~~~~------s~~~l~~~~lP~~lvIiGgG~IGlE~a~~~~~LG~~VTiie~~~~iLp~~D~ei~~~~~~~l~~~g  228 (454)
T COG1249         155 IDGARILD------SSDALFLLELPKSLVIVGGGYIGLEFASVFAALGSKVTVVERGDRILPGEDPEISKELTKQLEKGG  228 (454)
T ss_pred             CCCCeEEe------chhhcccccCCCEEEEECCCHHHHHHHHHHHHcCCcEEEEecCCCCCCcCCHHHHHHHHHHHHhCC
Confidence            32222222      22222223679999999999999999999999999998                  5678888889


Q ss_pred             cEEEcCCeEEEEEeCCCCcEEEEEcCCCC--EEeCCEEEEccCCccCCc--hhhhcCCcccC-CCEEeCCCCCCCCCceE
Q 012165          245 VKFVKGASIKNLEAGSDGRVAAVKLEDGS--TIDADTIVIGIGAKPTVS--PFERVGLNSSV-GGIQVDGQFRTRMPGIF  319 (469)
Q Consensus       245 V~~~~~~~v~~i~~~~~~~v~~v~~~~g~--~i~~D~vi~a~G~~p~~~--~~~~~gl~~~~-g~i~Vd~~~~t~~~~Vf  319 (469)
                      +++++++.+++++..+++  ..+.+++|+  ++++|.+++|+|++||++  -|++.|++.++ |+|.||++++|++|+||
T Consensus       229 v~i~~~~~v~~~~~~~~~--v~v~~~~g~~~~~~ad~vLvAiGR~Pn~~~LgLe~~Gv~~~~rg~I~VD~~~~Tnvp~Iy  306 (454)
T COG1249         229 VKILLNTKVTAVEKKDDG--VLVTLEDGEGGTIEADAVLVAIGRKPNTDGLGLENAGVELDDRGFIKVDDQMTTNVPGIY  306 (454)
T ss_pred             eEEEccceEEEEEecCCe--EEEEEecCCCCEEEeeEEEEccCCccCCCCCChhhcCceECCCCCEEeCCccccCCCCEE
Confidence            999999999999865444  367888876  799999999999999998  38999999874 89999988888999999


Q ss_pred             EeccccccCCccCCcccccchHHHHHHHHHHHHHHHhcCCC--CCCCCCCceeeecccccCCCcceeeEEeecCCCcE--
Q 012165          320 AIGDVAAFPLKMYDRTARVEHVDHARQSAQHCIKALLSAQT--HTYDYLPYFYSRVFEYEGSPRKVWWQFFGDNVGET--  395 (469)
Q Consensus       320 a~GD~a~~~~~~~~~~~~~~~~~~A~~~a~~~a~~i~~~~~--~~~~~~p~~~~~~~~~~g~~~~~~~~~~G~~~~~~--  395 (469)
                      |+|||+..+.        ..|.  |..+|+.+|+||++...  ..|..+|+   ..|..+-      +..+|.++.+.  
T Consensus       307 A~GDV~~~~~--------Lah~--A~~eg~iaa~~i~g~~~~~~d~~~iP~---~ift~Pe------ia~VGlte~ea~~  367 (454)
T COG1249         307 AIGDVIGGPM--------LAHV--AMAEGRIAAENIAGGKRTPIDYRLIPS---VVFTDPE------IASVGLTEEEAKE  367 (454)
T ss_pred             EeeccCCCcc--------cHhH--HHHHHHHHHHHHhCCCCCcCcccCCCE---EEECCCc------ceeeeCCHHHHHh
Confidence            9999988764        2244  99999999999996222  24677886   5565553      45566543210  


Q ss_pred             ----EEEc--cC-----------CCcEEEEEEe--CCEEEEEEeecCChHHhHHHHH-HHhCCCCCChh--hhcCCCcHH
Q 012165          396 ----IEIG--NF-----------DPKIATFWID--SGKLKGVLVESGSPEEFQLLPT-LARSQPFVDKA--KLQQASSVE  453 (469)
Q Consensus       396 ----~~~~--~~-----------~~~~~~~~~~--~~~l~g~~~~~~~~~~~~~~~~-~~~~~~~~~~~--~~~~~~~~~  453 (469)
                          +..+  .+           ...|.|++++  +++|+|+++++.+++++...-. +++.+.+.+..  .++.|||++
T Consensus       368 ~g~~~~~~~~~f~~~~ra~~~~~~~G~~Klv~d~~t~~IlGahivg~~A~ElI~~~~~a~~~g~t~~~~~~~i~~HPT~s  447 (454)
T COG1249         368 AGIDYKVGKFPFAANGRAITMGETDGFVKLVVDKETGRILGAHIVGPGASELINEIALAIEMGATAEDLALTIHAHPTLS  447 (454)
T ss_pred             cCCceEEEEeecccchhHHhccCCceEEEEEEECCCCeEEEEEEECCCHHHHHHHHHHHHHCCCcHHHHhcCCCCCCChH
Confidence                1111  11           1237777775  4899999998888888776655 46777755532  347899999


Q ss_pred             HHHHHHH
Q 012165          454 EALEIAR  460 (469)
Q Consensus       454 ~~~~~~~  460 (469)
                      |++++|+
T Consensus       448 E~~~~a~  454 (454)
T COG1249         448 EALKEAA  454 (454)
T ss_pred             HHHHHhC
Confidence            9999874

>PRK06370 mercuric reductase; Validated

Probab=100.00  E-value=8.4e-40  Score=333.42  Aligned_cols=385  Identities=18%  Similarity=0.278  Sum_probs=256.2

Q ss_pred             CCCCCcEEEEcCcHHHHHHHHHHHHcCCCCCcEEEEcCCCCCCC--CCCCC-cccccC--------------CCC---CC
Q 012165           48 ANENREFVIVGGGNAAGYAARTFVEHGMADGRLCIVSKEAYAPY--ERPAL-TKGYLF--------------PLD---KK  107 (469)
Q Consensus        48 ~~~~~~vvIIGgG~AGl~aA~~L~~~g~~~~~V~vie~~~~~~~--~~~~l-~~~~~~--------------~~~---~~  107 (469)
                      ++.++||+||||||||++||..|++.|.   +|+|||++...+-  ++... +|.++.              +..   ..
T Consensus         2 ~~~~~DvvVIG~GpaG~~aA~~aa~~G~---~v~lie~~~~GG~c~~~gciPsk~l~~~a~~~~~~~~~~~~g~~~~~~~   78 (463)
T PRK06370          2 PAQRYDAIVIGAGQAGPPLAARAAGLGM---KVALIERGLLGGTCVNTGCVPTKTLIASARAAHLARRAAEYGVSVGGPV   78 (463)
T ss_pred             CCccccEEEECCCHHHHHHHHHHHhCCC---eEEEEecCccCCceeccccCcHHHHHHHHHHHHHHHHHHhcCcccCccC
Confidence            4556999999999999999999999987   7999998643221  11111 111100              000   00


Q ss_pred             CCCCCCCcccc---CCCCCCCCHhHHHHC-CcEEEeCCcEEEEeCCCcEEEeCCCeEEEeccEEeccCCCCCcCCCCCCC
Q 012165          108 PARLPGFHTCV---GSGGERQTPEWYKEK-GIEMIYQDPVTSIDIEKQTLITNSGKLLKYGSLIVATGCTASRFPEKIGG  183 (469)
Q Consensus       108 ~~~~~~~~~~~---~~~~~~~~~~~~~~~-~i~~~~~~~v~~id~~~~~v~~~~g~~~~yd~lVlAtG~~~~~~~~~~g~  183 (469)
                      ..++..+....   ..........++++. +++++.++.+ .  .+.++|++ ++.++.||+||||||++|+ .|+++|.
T Consensus        79 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gv~v~~g~~~-~--~~~~~v~v-~~~~~~~d~lViATGs~p~-~p~i~G~  153 (463)
T PRK06370         79 SVDFKAVMARKRRIRARSRHGSEQWLRGLEGVDVFRGHAR-F--ESPNTVRV-GGETLRAKRIFINTGARAA-IPPIPGL  153 (463)
T ss_pred             ccCHHHHHHHHHHHHHHHHHhHHHHHhcCCCcEEEEEEEE-E--ccCCEEEE-CcEEEEeCEEEEcCCCCCC-CCCCCCC
Confidence            00110000000   000001223455666 9999987543 2  34567777 4567999999999999997 5666775


Q ss_pred             CcCcEEEecCHHHHHHHHHhhhcCCeEEEEcCChHHHHHHHHHHhCCCeEe------------------eeHHHHHHcCc
Q 012165          184 YLPGVHYIRDVADADALISSLEKAKKVVVVGGGYIGMEVAAAAVGWKLDTT------------------RYEQLYQQNGV  245 (469)
Q Consensus       184 ~~~~v~~~~~~~~~~~~~~~~~~~~~vvVvG~G~~g~e~A~~l~~~g~~v~------------------~~~~~l~~~gV  245 (469)
                      +..++++..      .+......+++++|||+|++|+|+|..|.++|.+|+                  .+.+.+++.||
T Consensus       154 ~~~~~~~~~------~~~~~~~~~~~vvVIGgG~~g~E~A~~l~~~G~~Vtli~~~~~~l~~~~~~~~~~l~~~l~~~GV  227 (463)
T PRK06370        154 DEVGYLTNE------TIFSLDELPEHLVIIGGGYIGLEFAQMFRRFGSEVTVIERGPRLLPREDEDVAAAVREILEREGI  227 (463)
T ss_pred             CcCceEcch------HhhCccccCCEEEEECCCHHHHHHHHHHHHcCCeEEEEEcCCCCCcccCHHHHHHHHHHHHhCCC
Confidence            444444332      222222457999999999999999999999999987                  34566788999


Q ss_pred             EEEcCCeEEEEEeCCCCcEEEEEcC-CCCEEeCCEEEEccCCccCCc-h-hhhcCCccc-CCCEEeCCCCCCCCCceEEe
Q 012165          246 KFVKGASIKNLEAGSDGRVAAVKLE-DGSTIDADTIVIGIGAKPTVS-P-FERVGLNSS-VGGIQVDGQFRTRMPGIFAI  321 (469)
Q Consensus       246 ~~~~~~~v~~i~~~~~~~v~~v~~~-~g~~i~~D~vi~a~G~~p~~~-~-~~~~gl~~~-~g~i~Vd~~~~t~~~~Vfa~  321 (469)
                      ++++++.+.+++..+++....+... +++++++|.||+|+|.+||++ + +++.+++.+ +|+|.||+++||++|+|||+
T Consensus       228 ~i~~~~~V~~i~~~~~~~~v~~~~~~~~~~i~~D~Vi~A~G~~pn~~~l~l~~~g~~~~~~G~i~vd~~l~t~~~~IyAi  307 (463)
T PRK06370        228 DVRLNAECIRVERDGDGIAVGLDCNGGAPEITGSHILVAVGRVPNTDDLGLEAAGVETDARGYIKVDDQLRTTNPGIYAA  307 (463)
T ss_pred             EEEeCCEEEEEEEcCCEEEEEEEeCCCceEEEeCEEEECcCCCcCCCCcCchhhCceECCCCcEeECcCCcCCCCCEEEe
Confidence            9999999999986433332223332 345799999999999999998 4 678888775 57799999999999999999


Q ss_pred             ccccccCCccCCcccccchHHHHHHHHHHHHHHHhcCCCCC--CCCCCceeeecccccCCCcceeeEEeecCCC------
Q 012165          322 GDVAAFPLKMYDRTARVEHVDHARQSAQHCIKALLSAQTHT--YDYLPYFYSRVFEYEGSPRKVWWQFFGDNVG------  393 (469)
Q Consensus       322 GD~a~~~~~~~~~~~~~~~~~~A~~~a~~~a~~i~~~~~~~--~~~~p~~~~~~~~~~g~~~~~~~~~~G~~~~------  393 (469)
                      |||+..+.          ....|..||+.+|+||++....+  +..+|+  .. |..+.      +..+|....      
T Consensus       308 GD~~~~~~----------~~~~A~~~g~~aa~ni~~~~~~~~~~~~~p~--~~-~~~p~------ia~vG~te~~a~~~g  368 (463)
T PRK06370        308 GDCNGRGA----------FTHTAYNDARIVAANLLDGGRRKVSDRIVPY--AT-YTDPP------LARVGMTEAEARKSG  368 (463)
T ss_pred             eecCCCcc----------cHHHHHHHHHHHHHHHhCCCCCCcccccCCe--EE-EcCCC------cEeeeCCHHHHHHcC
Confidence            99987532          23458999999999998643333  334554  22 32221      344554321      


Q ss_pred             -cEEE--E--c--------cCCCcEEEEEEe--CCEEEEEEeecCChHHhHH-HHHHHhCCCCCCh--hhhcCCCcHHHH
Q 012165          394 -ETIE--I--G--------NFDPKIATFWID--SGKLKGVLVESGSPEEFQL-LPTLARSQPFVDK--AKLQQASSVEEA  455 (469)
Q Consensus       394 -~~~~--~--~--------~~~~~~~~~~~~--~~~l~g~~~~~~~~~~~~~-~~~~~~~~~~~~~--~~~~~~~~~~~~  455 (469)
                       ++..  .  .        +....+.|++++  +++|+|+++++.++.++.. +..+++.+.+++.  ..++.|||++|+
T Consensus       369 ~~~~~~~~~~~~~~~~~~~~~~~g~~kli~d~~~~~ilG~~~~g~~a~e~i~~~~~ai~~~~t~~~l~~~~~~hPt~~e~  448 (463)
T PRK06370        369 RRVLVGTRPMTRVGRAVEKGETQGFMKVVVDADTDRILGATILGVHGDEMIHEILDAMYAGAPYTTLSRAIHIHPTVSEL  448 (463)
T ss_pred             CCeEEEEEecCcchhHHhcCCCCEEEEEEEECCCCEEEEEEEECCCHHHHHHHHHHHHHCCCCHHHHhcCcccCCChHHH
Confidence             1110  0  0        111236777775  5999999987777766554 4556788888773  334789999999


Q ss_pred             HHHHHhcCCc
Q 012165          456 LEIARAALPV  465 (469)
Q Consensus       456 ~~~~~~~~~~  465 (469)
                      ++.|++++.+
T Consensus       449 ~~~a~~~~~~  458 (463)
T PRK06370        449 IPTLAQALRR  458 (463)
T ss_pred             HHHHHHhhhh
Confidence            9999987643

>PRK09853 putative selenate reductase subunit YgfK; Provisional

Probab=100.00  E-value=1.8e-41  Score=359.28  Aligned_cols=332  Identities=21%  Similarity=0.250  Sum_probs=239.4

Q ss_pred             cccccccccccccccccCCCCcccccc--cCCcccccccccccc-------c--cc-CCCCCCcEEEEcCcHHHHHHHHH
Q 012165            2 ASVSNSLSFKHGLSLWCPQSPSLHRIR--HSSAKNFQRRGFVVA-------Y--SS-FANENREFVIVGGGNAAGYAART   69 (469)
Q Consensus         2 ~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~-------~--~~-~~~~~~~vvIIGgG~AGl~aA~~   69 (469)
                      ..++||||.+||++|+++|+..|.|..  .+++++.+.|...+.       .  .+ .....++|+||||||||++||.+
T Consensus       478 I~~~nPlP~icGrVCph~Ce~~C~R~~~d~pV~I~~Lkr~a~d~~~~~~~~~~~~~~~~~tgKkVaIIGgGPAGLsAA~~  557 (1019)
T PRK09853        478 IYQRNALPAITGHICDHQCQYNCTRLDYDEAVNIRELKKVALEKGWDEYKQRWHKPAGIGSRKKVAVIGAGPAGLAAAYF  557 (1019)
T ss_pred             HHHhCChhhHhhCcCCchhHHHhcCCCCCCCeeccHHHHHHHhhHHHhcccccCCCCccCCCCcEEEECCCHHHHHHHHH
Confidence            357899999999999999999999976  889999888876432       1  12 12457899999999999999999


Q ss_pred             HHHcCCCCCcEEEEcCCCCCCCCCCCCcccccCCCCCCCCCCCCCccccCCCCCCCCHhHHHHCCcEEEeCCcEEEEeCC
Q 012165           70 FVEHGMADGRLCIVSKEAYAPYERPALTKGYLFPLDKKPARLPGFHTCVGSGGERQTPEWYKEKGIEMIYQDPVTSIDIE  149 (469)
Q Consensus        70 L~~~g~~~~~V~vie~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~v~~id~~  149 (469)
                      |++.|+   +|+|+|+++.++..   +.  +..+.    .+++.       +...+..+++.+.|+++++++.+ .+   
T Consensus       558 Lar~G~---~VtV~Ek~~~~GG~---lr--~~IP~----~Rlp~-------evL~~die~l~~~GVe~~~gt~V-di---  614 (1019)
T PRK09853        558 LARAGH---PVTVFEREENAGGV---VK--NIIPQ----FRIPA-------ELIQHDIEFVKAHGVKFEFGCSP-DL---  614 (1019)
T ss_pred             HHHcCC---eEEEEecccccCcc---ee--eeccc----ccccH-------HHHHHHHHHHHHcCCEEEeCcee-EE---
Confidence            999998   79999998764321   00  11111    11110       00123346778889999998665 22   


Q ss_pred             CcEEEeCCCeEEEeccEEeccCCCCCcCCCCCCCCcCcEEEecC-HHHHHHHHHhhhcCCeEEEEcCChHHHHHHHHHHh
Q 012165          150 KQTLITNSGKLLKYGSLIVATGCTASRFPEKIGGYLPGVHYIRD-VADADALISSLEKAKKVVVVGGGYIGMEVAAAAVG  228 (469)
Q Consensus       150 ~~~v~~~~g~~~~yd~lVlAtG~~~~~~~~~~g~~~~~v~~~~~-~~~~~~~~~~~~~~~~vvVvG~G~~g~e~A~~l~~  228 (469)
                          .+++.....||+||||||+++...+.++|.+ +++++..+ +.+..........+++|+|||||.+|+|+|..+.+
T Consensus       615 ----~le~L~~~gYDaVILATGA~~~~~l~IpG~~-~gV~saldfL~~~k~~~~~~~~GKrVVVIGGGnVAmD~Ar~a~R  689 (1019)
T PRK09853        615 ----TVEQLKNEGYDYVVVAIGADKNGGLKLEGGN-QNVIKALPFLEEYKNKGTALKLGKHVVVVGGGNTAMDAARAALR  689 (1019)
T ss_pred             ----EhhhheeccCCEEEECcCCCCCCCCCCCCcc-CCceehHHHHHHHhhhcccccCCCEEEEECCChHHHHHHHHHHh
Confidence                2233344679999999999865444555543 44443221 11111222334568999999999999999999887


Q ss_pred             CC--CeEe---------------eeHHHHHHcCcEEEcCCeEEEEEeCCCCcE----------------EEEEcCCCCEE
Q 012165          229 WK--LDTT---------------RYEQLYQQNGVKFVKGASIKNLEAGSDGRV----------------AAVKLEDGSTI  275 (469)
Q Consensus       229 ~g--~~v~---------------~~~~~l~~~gV~~~~~~~v~~i~~~~~~~v----------------~~v~~~~g~~i  275 (469)
                      .+  .+|+               .+.+. .+.||+++.+..+.++..  ++++                ..+...+++++
T Consensus       690 lgGakeVTLVyRr~~~~MPA~~eEle~A-leeGVe~~~~~~p~~I~~--dG~l~~~~~~lg~~d~~Gr~~~v~tg~~~~I  766 (1019)
T PRK09853        690 VPGVEKVTVVYRRTKQEMPAWREEYEEA-LEDGVEFKELLNPESFDA--DGTLTCRVMKLGEPDESGRRRPVETGETVTL  766 (1019)
T ss_pred             cCCCceEEEEEccCcccccccHHHHHHH-HHcCCEEEeCCceEEEEc--CCcEEEEEEEeecccCCCceEEeeCCCeEEE
Confidence            74  3666               12222 357999999988888862  2322                12233445689


Q ss_pred             eCCEEEEccCCccCCchhhhcCCccc-CCCEEeCCCCCCCCCceEEeccccccCCccCCcccccchHHHHHHHHHHHHHH
Q 012165          276 DADTIVIGIGAKPTVSPFERVGLNSS-VGGIQVDGQFRTRMPGIFAIGDVAAFPLKMYDRTARVEHVDHARQSAQHCIKA  354 (469)
Q Consensus       276 ~~D~vi~a~G~~p~~~~~~~~gl~~~-~g~i~Vd~~~~t~~~~Vfa~GD~a~~~~~~~~~~~~~~~~~~A~~~a~~~a~~  354 (469)
                      ++|.||+|+|.+|++++++..|+..+ +|++.||++++|+.|+|||+|||+..+.          .+..|+.+|+.+|++
T Consensus       767 ~aD~VIvAIG~~Pntelle~~GL~ld~~G~I~VDetlqTs~pgVFAaGD~a~Gp~----------tvv~Ai~qGr~AA~n  836 (1019)
T PRK09853        767 EADTVITAIGEQVDTELLKANGIPLDKKGWPVVDANGETSLTNVYMIGDVQRGPS----------TIVAAIADARRAADA  836 (1019)
T ss_pred             EeCEEEECCCCcCChhHHHhcCccccCCCCEEeCCCcccCCCCEEEEeccccCch----------HHHHHHHHHHHHHHH
Confidence            99999999999999999998888765 5789999999999999999999987543          455799999999999


Q ss_pred             HhcCCCCCCCCCCceeeecc
Q 012165          355 LLSAQTHTYDYLPYFYSRVF  374 (469)
Q Consensus       355 i~~~~~~~~~~~p~~~~~~~  374 (469)
                      |++.....+...|+||++.+
T Consensus       837 I~~~~~~~~~~~~~~~~~~~  856 (1019)
T PRK09853        837 ILSREGIRSHQNDKYWNNVE  856 (1019)
T ss_pred             HhhhcCCCcccccccccccc
Confidence            99766667888888888655

>PRK05249 soluble pyridine nucleotide transhydrogenase; Provisional

Probab=100.00  E-value=8.1e-40  Score=333.92  Aligned_cols=385  Identities=18%  Similarity=0.259  Sum_probs=262.1

Q ss_pred             CCCCCcEEEEcCcHHHHHHHHHHHHcCCCCCcEEEEcCCCCCCCCC---CCC-cccccC--------CCCCCCCCCC---
Q 012165           48 ANENREFVIVGGGNAAGYAARTFVEHGMADGRLCIVSKEAYAPYER---PAL-TKGYLF--------PLDKKPARLP---  112 (469)
Q Consensus        48 ~~~~~~vvIIGgG~AGl~aA~~L~~~g~~~~~V~vie~~~~~~~~~---~~l-~~~~~~--------~~~~~~~~~~---  112 (469)
                      .+.++||+|||||+||++||..|++.|.   +|+|||+.+..+...   ... ++.+..        ........++   
T Consensus         2 ~~~~yDvvVIGaGpaG~~aA~~la~~G~---~v~liE~~~~~GG~~~~~gcipsk~l~~~~~~~~~~~~~~~~~~~~~~~   78 (461)
T PRK05249          2 HMYDYDLVVIGSGPAGEGAAMQAAKLGK---RVAVIERYRNVGGGCTHTGTIPSKALREAVLRLIGFNQNPLYSSYRVKL   78 (461)
T ss_pred             CCccccEEEECCCHHHHHHHHHHHhCCC---EEEEEeccccccccccccCCCCHHHHHHHHHHHHHHhhhhhhcccCCcC
Confidence            4567999999999999999999999987   899999865443211   001 111000        0000000000   


Q ss_pred             --CCccccC------CCCCCCCHhHHHHCCcEEEeCCcEEEEeCCCcEEEeCCCe--EEEeccEEeccCCCCCcCCCCCC
Q 012165          113 --GFHTCVG------SGGERQTPEWYKEKGIEMIYQDPVTSIDIEKQTLITNSGK--LLKYGSLIVATGCTASRFPEKIG  182 (469)
Q Consensus       113 --~~~~~~~------~~~~~~~~~~~~~~~i~~~~~~~v~~id~~~~~v~~~~g~--~~~yd~lVlAtG~~~~~~~~~~g  182 (469)
                        .+.....      ........+++++.+++++.+ ++..++....+|...+|.  ++.||+||||||++|.. |+.++
T Consensus        79 ~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~v~~~~g-~~~~~~~~~~~v~~~~g~~~~~~~d~lviATGs~p~~-p~~~~  156 (461)
T PRK05249         79 RITFADLLARADHVINKQVEVRRGQYERNRVDLIQG-RARFVDPHTVEVECPDGEVETLTADKIVIATGSRPYR-PPDVD  156 (461)
T ss_pred             ccCHHHHHHHHHHHHHHHHHHHHHHHHHCCCEEEEE-EEEEecCCEEEEEeCCCceEEEEcCEEEEcCCCCCCC-CCCCC
Confidence              0000000      000011233456789999986 677777766667766664  69999999999999974 44444


Q ss_pred             CCcCcEEEecCHHHHHHHHHhhhcCCeEEEEcCChHHHHHHHHHHhCCCeEe------------------eeHHHHHHcC
Q 012165          183 GYLPGVHYIRDVADADALISSLEKAKKVVVVGGGYIGMEVAAAAVGWKLDTT------------------RYEQLYQQNG  244 (469)
Q Consensus       183 ~~~~~v~~~~~~~~~~~~~~~~~~~~~vvVvG~G~~g~e~A~~l~~~g~~v~------------------~~~~~l~~~g  244 (469)
                      ...+++++      ++.+......+++++|||+|++|+|+|..|+++|.+|+                  .+.+.+++.|
T Consensus       157 ~~~~~v~~------~~~~~~~~~~~~~v~IiGgG~~g~E~A~~l~~~g~~Vtli~~~~~~l~~~d~~~~~~l~~~l~~~g  230 (461)
T PRK05249        157 FDHPRIYD------SDSILSLDHLPRSLIIYGAGVIGCEYASIFAALGVKVTLINTRDRLLSFLDDEISDALSYHLRDSG  230 (461)
T ss_pred             CCCCeEEc------HHHhhchhhcCCeEEEECCCHHHHHHHHHHHHcCCeEEEEecCCCcCCcCCHHHHHHHHHHHHHcC
Confidence            33344432      33333334568999999999999999999999999988                  3456778899


Q ss_pred             cEEEcCCeEEEEEeCCCCcEEEEEcCCCCEEeCCEEEEccCCccCCch--hhhcCCccc-CCCEEeCCCCCCCCCceEEe
Q 012165          245 VKFVKGASIKNLEAGSDGRVAAVKLEDGSTIDADTIVIGIGAKPTVSP--FERVGLNSS-VGGIQVDGQFRTRMPGIFAI  321 (469)
Q Consensus       245 V~~~~~~~v~~i~~~~~~~v~~v~~~~g~~i~~D~vi~a~G~~p~~~~--~~~~gl~~~-~g~i~Vd~~~~t~~~~Vfa~  321 (469)
                      |++++++.+++++..++ .+ .+.+++|+++++|.||+|+|++||+++  +++.++..+ +|++.||+++||+.|+|||+
T Consensus       231 I~v~~~~~v~~i~~~~~-~~-~v~~~~g~~i~~D~vi~a~G~~p~~~~l~l~~~g~~~~~~G~i~vd~~~~t~~~~IyAi  308 (461)
T PRK05249        231 VTIRHNEEVEKVEGGDD-GV-IVHLKSGKKIKADCLLYANGRTGNTDGLNLENAGLEADSRGQLKVNENYQTAVPHIYAV  308 (461)
T ss_pred             CEEEECCEEEEEEEeCC-eE-EEEECCCCEEEeCEEEEeecCCccccCCCchhhCcEecCCCcEeeCCCcccCCCCEEEe
Confidence            99999999999985433 33 466778889999999999999999885  577888875 57799999999999999999


Q ss_pred             ccccccCCccCCcccccchHHHHHHHHHHHHHHHhcCCC-CCCCCCCceeeecccccCCCcceeeEEeecCCC-------
Q 012165          322 GDVAAFPLKMYDRTARVEHVDHARQSAQHCIKALLSAQT-HTYDYLPYFYSRVFEYEGSPRKVWWQFFGDNVG-------  393 (469)
Q Consensus       322 GD~a~~~~~~~~~~~~~~~~~~A~~~a~~~a~~i~~~~~-~~~~~~p~~~~~~~~~~g~~~~~~~~~~G~~~~-------  393 (469)
                      |||+..+.          ....|..+|+.+|.+|++... ..+..+|.   .+|..+.      +..+|.+..       
T Consensus       309 GD~~~~~~----------~~~~A~~~g~~aa~~i~g~~~~~~~~~~p~---~i~~~p~------ia~vG~te~~a~~~g~  369 (461)
T PRK05249        309 GDVIGFPS----------LASASMDQGRIAAQHAVGEATAHLIEDIPT---GIYTIPE------ISSVGKTEQELTAAKV  369 (461)
T ss_pred             eecCCCcc----------cHhHHHHHHHHHHHHHcCCCcccccCCCCe---EEECCCc------ceEecCCHHHHHHcCC
Confidence            99997543          344699999999999996432 23345554   3444321      334444321       


Q ss_pred             cE-------------EEEccCCCcEEEEEEe--CCEEEEEEeecCChHHhHH-HHHHHhCCCCCCh--hhhcCCCcHHHH
Q 012165          394 ET-------------IEIGNFDPKIATFWID--SGKLKGVLVESGSPEEFQL-LPTLARSQPFVDK--AKLQQASSVEEA  455 (469)
Q Consensus       394 ~~-------------~~~~~~~~~~~~~~~~--~~~l~g~~~~~~~~~~~~~-~~~~~~~~~~~~~--~~~~~~~~~~~~  455 (469)
                      +.             ...+ ....+.|++++  +++|+|++++++++.++.. +..+|+.+.+++.  ..++.|||+.|+
T Consensus       370 ~~~~~~~~~~~~~~~~~~~-~~~g~~klv~~~~~~~ilG~~~~g~~a~e~i~~~~~ai~~~~t~~~l~~~~~~~Pt~~e~  448 (461)
T PRK05249        370 PYEVGRARFKELARAQIAG-DNVGMLKILFHRETLEILGVHCFGERATEIIHIGQAIMEQKGTIEYFVNTTFNYPTMAEA  448 (461)
T ss_pred             CeEEEEEccccccceeecC-CCCcEEEEEEECCCCEEEEEEEECCCHHHHHHHHHHHHHCCCCHHHHhcCccCCCCHHHH
Confidence            00             1111 11236777764  5899999998887766554 4556788887763  334678999999


Q ss_pred             HHHHHhcCCc
Q 012165          456 LEIARAALPV  465 (469)
Q Consensus       456 ~~~~~~~~~~  465 (469)
                      ++.|++++.+
T Consensus       449 ~~~~~~~~~~  458 (461)
T PRK05249        449 YRVAALDGLN  458 (461)
T ss_pred             HHHHHHHHhc
Confidence            9999876654

>PRK14694 putative mercuric reductase; Provisional

Probab=100.00  E-value=1.1e-39  Score=332.69  Aligned_cols=385  Identities=18%  Similarity=0.267  Sum_probs=258.1

Q ss_pred             CCCCCCcEEEEcCcHHHHHHHHHHHHcCCCCCcEEEEcCCCCCC--CCCCCC-cccccC--------CCCC----CCCCC
Q 012165           47 FANENREFVIVGGGNAAGYAARTFVEHGMADGRLCIVSKEAYAP--YERPAL-TKGYLF--------PLDK----KPARL  111 (469)
Q Consensus        47 ~~~~~~~vvIIGgG~AGl~aA~~L~~~g~~~~~V~vie~~~~~~--~~~~~l-~~~~~~--------~~~~----~~~~~  111 (469)
                      |....+||+|||||+||++||..|++.|.   +|+|||++..-+  .++-.. ++.++.        ....    .....
T Consensus         2 ~~~~~~dviVIGaG~aG~~aA~~l~~~g~---~v~lie~~~~GGtc~n~GciPsk~l~~~a~~~~~~~~~~~~~g~~~~~   78 (468)
T PRK14694          2 MSDNNLHIAVIGSGGSAMAAALKATERGA---RVTLIERGTIGGTCVNIGCVPSKIMIRAAHIAHLRRESPFDDGLSAQA   78 (468)
T ss_pred             CCCCcCCEEEECCCHHHHHHHHHHHhCCC---cEEEEEccccccceecCCccccHHHHHHHHHHHHHhhccccCCcccCC
Confidence            44567999999999999999999999987   799999874211  000000 111100        0000    00000


Q ss_pred             CCC--ccccC------CCCCC-CCHhHHHH-CCcEEEeCCcEEEEeCCCcEEEeCCC--eEEEeccEEeccCCCCCcCCC
Q 012165          112 PGF--HTCVG------SGGER-QTPEWYKE-KGIEMIYQDPVTSIDIEKQTLITNSG--KLLKYGSLIVATGCTASRFPE  179 (469)
Q Consensus       112 ~~~--~~~~~------~~~~~-~~~~~~~~-~~i~~~~~~~v~~id~~~~~v~~~~g--~~~~yd~lVlAtG~~~~~~~~  179 (469)
                      +.+  .....      ..... .....+++ .+++++.+ ++..+|.+..+|++.+|  .+++||+||||||++|+ .|+
T Consensus        79 ~~~~~~~l~~~~~~~~~~~~~~~~~~~l~~~~~v~~~~g-~v~~id~~~~~V~~~~g~~~~~~~d~lViATGs~p~-~p~  156 (468)
T PRK14694         79 PVVDRSALLAQQQARVEELRESKYQSILRENAAITVLNG-EARFVDERTLTVTLNDGGEQTVHFDRAFIGTGARPA-EPP  156 (468)
T ss_pred             CccCHHHHHHHHHHHHHHHhcccHHHHHhcCCCeEEEEE-EEEEecCCEEEEEecCCCeEEEECCEEEEeCCCCCC-CCC
Confidence            000  00000      00000 01122333 38999886 79999998888988877  36999999999999997 566


Q ss_pred             CCCCCcCcEEEecCHHHHHHHHHhhhcCCeEEEEcCChHHHHHHHHHHhCCCeEe-----------------eeHHHHHH
Q 012165          180 KIGGYLPGVHYIRDVADADALISSLEKAKKVVVVGGGYIGMEVAAAAVGWKLDTT-----------------RYEQLYQQ  242 (469)
Q Consensus       180 ~~g~~~~~v~~~~~~~~~~~~~~~~~~~~~vvVvG~G~~g~e~A~~l~~~g~~v~-----------------~~~~~l~~  242 (469)
                      ++|.+...+.+.   .+...+   ...+++++|||+|++|+|+|..|.++|.+++                 .+++.+++
T Consensus       157 i~G~~~~~~~~~---~~~~~l---~~~~~~vvViG~G~~G~E~A~~l~~~g~~Vtlv~~~~~l~~~~~~~~~~l~~~l~~  230 (468)
T PRK14694        157 VPGLAETPYLTS---TSALEL---DHIPERLLVIGASVVALELAQAFARLGSRVTVLARSRVLSQEDPAVGEAIEAAFRR  230 (468)
T ss_pred             CCCCCCCceEcc---hhhhch---hcCCCeEEEECCCHHHHHHHHHHHHcCCeEEEEECCCCCCCCCHHHHHHHHHHHHh
Confidence            666432222221   222222   2347899999999999999999999999987                 45677888


Q ss_pred             cCcEEEcCCeEEEEEeCCCCcEEEEEcCCCCEEeCCEEEEccCCccCCchh--hhcCCcccCCCEEeCCCCCCCCCceEE
Q 012165          243 NGVKFVKGASIKNLEAGSDGRVAAVKLEDGSTIDADTIVIGIGAKPTVSPF--ERVGLNSSVGGIQVDGQFRTRMPGIFA  320 (469)
Q Consensus       243 ~gV~~~~~~~v~~i~~~~~~~v~~v~~~~g~~i~~D~vi~a~G~~p~~~~~--~~~gl~~~~g~i~Vd~~~~t~~~~Vfa  320 (469)
                      .||++++++.+.+++.+ ++.+ .+.+.++ ++++|.||+++|.+||++++  ++++++.++|+|.||+++||++|+|||
T Consensus       231 ~GI~v~~~~~v~~i~~~-~~~~-~v~~~~~-~i~~D~vi~a~G~~pn~~~l~l~~~g~~~~~G~i~vd~~~~Ts~~~IyA  307 (468)
T PRK14694        231 EGIEVLKQTQASEVDYN-GREF-ILETNAG-TLRAEQLLVATGRTPNTENLNLESIGVETERGAIRIDEHLQTTVSGIYA  307 (468)
T ss_pred             CCCEEEeCCEEEEEEEc-CCEE-EEEECCC-EEEeCEEEEccCCCCCcCCCCchhcCcccCCCeEeeCCCcccCCCCEEE
Confidence            99999999999999854 3322 3555444 79999999999999999874  667887777889999999999999999


Q ss_pred             eccccccCCccCCcccccchHHHHHHHHHHHHHHHhcCCC-CCCCCCCceeeecccccCCCcceeeEEeecCCC------
Q 012165          321 IGDVAAFPLKMYDRTARVEHVDHARQSAQHCIKALLSAQT-HTYDYLPYFYSRVFEYEGSPRKVWWQFFGDNVG------  393 (469)
Q Consensus       321 ~GD~a~~~~~~~~~~~~~~~~~~A~~~a~~~a~~i~~~~~-~~~~~~p~~~~~~~~~~g~~~~~~~~~~G~~~~------  393 (469)
                      +|||+..+.          ....|..+|+.+|.||++... ..+..+|.+  ..++.+       +..+|.+..      
T Consensus       308 ~GD~~~~~~----------~~~~A~~~G~~aa~~i~~~~~~~~~~~~p~~--~~~~p~-------~a~vGlte~~a~~~g  368 (468)
T PRK14694        308 AGDCTDQPQ----------FVYVAAAGGSRAAINMTGGDASLDLSAMPEV--IFTDPQ-------VATVGLSEAEAQAQG  368 (468)
T ss_pred             EeecCCCcc----------cHHHHHHHHHHHHHHhcCCCcccccCCCCeE--EECCCC-------eEEeeCCHHHHHHcC
Confidence            999997543          344588999999999986432 223445543  222221       445565421      


Q ss_pred             -cE--EEE----------ccCCCcEEEEEEe--CCEEEEEEeecCChHHhHH-HHHHHhCCCCCCh-hh-hcCCCcHHHH
Q 012165          394 -ET--IEI----------GNFDPKIATFWID--SGKLKGVLVESGSPEEFQL-LPTLARSQPFVDK-AK-LQQASSVEEA  455 (469)
Q Consensus       394 -~~--~~~----------~~~~~~~~~~~~~--~~~l~g~~~~~~~~~~~~~-~~~~~~~~~~~~~-~~-~~~~~~~~~~  455 (469)
                       +.  ...          ......|.|++++  +++|+|+++++.++.++.. +..+|+.+.+++. .. .+.|||++|+
T Consensus       369 ~~~~~~~~~~~~~~~~~~~~~~~g~~klv~~~~~~~ilG~~~~g~~a~e~i~~~~~ai~~~~t~~~l~~~~~~hPt~~e~  448 (468)
T PRK14694        369 YDTDSRTLDLENVPRALVNFDTGGFIKMVAERGSGRLLGVQVVAGEAGELIQTAVMALRARMTVNEIADELFPYLTMVEG  448 (468)
T ss_pred             CceEEEEEecccchhhhhcCCCceEEEEEEECCCCEEEEEEEECCCHHHHHHHHHHHHHCCCCHHHHhccccCCCchHHH
Confidence             11  000          0011236777764  5999999987777766554 4556788888773 33 4679999999


Q ss_pred             HHHHHhcCC
Q 012165          456 LEIARAALP  464 (469)
Q Consensus       456 ~~~~~~~~~  464 (469)
                      ++.|+..+.
T Consensus       449 ~~~~~~~~~  457 (468)
T PRK14694        449 LKLCAQTFT  457 (468)
T ss_pred             HHHHHHhhh
Confidence            999888653

>PRK12831 putative oxidoreductase; Provisional

Probab=100.00  E-value=3.5e-41  Score=341.27  Aligned_cols=321  Identities=21%  Similarity=0.212  Sum_probs=236.9

Q ss_pred             ccccccccccccccccc--CCCCcccccc--cCCcccccccccccc------c--ccCCCCCCcEEEEcCcHHHHHHHHH
Q 012165            2 ASVSNSLSFKHGLSLWC--PQSPSLHRIR--HSSAKNFQRRGFVVA------Y--SSFANENREFVIVGGGNAAGYAART   69 (469)
Q Consensus         2 ~~~~~~~~~~~~~~~~~--~~~~~~~~~~--~~~~~~~~~~~~~~~------~--~~~~~~~~~vvIIGgG~AGl~aA~~   69 (469)
                      ..++||||.+||++|++  +|+..|+|..  .++++..+.|+..+.      .  .+.....++|+||||||||++||.+
T Consensus        79 ~~~~np~p~~~grvC~~~~~Ce~~C~r~~~~~~v~I~~l~r~~~~~~~~~~~~~~~~~~~~~~~V~IIG~GpAGl~aA~~  158 (464)
T PRK12831         79 IAKYNALPAVCGRVCPQESQCEGKCVLGIKGEPVAIGKLERFVADWARENGIDLSETEEKKGKKVAVIGSGPAGLTCAGD  158 (464)
T ss_pred             HHHhCCchhhhhccCCCCCChHHHhcCCCCCCCeehhHHHHHHHHHHHHcCCCCCCCcCCCCCEEEEECcCHHHHHHHHH
Confidence            35789999999999998  9999999987  889998888876642      1  1233567899999999999999999


Q ss_pred             HHHcCCCCCcEEEEcCCCCCCCCCCCCcccccCCCCCCCCCCCCCccccCCCCCCCCHhHHHHCCcEEEeCCcEEEEeCC
Q 012165           70 FVEHGMADGRLCIVSKEAYAPYERPALTKGYLFPLDKKPARLPGFHTCVGSGGERQTPEWYKEKGIEMIYQDPVTSIDIE  149 (469)
Q Consensus        70 L~~~g~~~~~V~vie~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~v~~id~~  149 (469)
                      |+++|+   +|+|+|+++.++..   +.  +-.+    ..+++..      .......+++++.|+++++++.+      
T Consensus       159 l~~~G~---~V~v~e~~~~~GG~---l~--~gip----~~~l~~~------~~~~~~~~~~~~~gv~i~~~~~v------  214 (464)
T PRK12831        159 LAKMGY---DVTIFEALHEPGGV---LV--YGIP----EFRLPKE------TVVKKEIENIKKLGVKIETNVVV------  214 (464)
T ss_pred             HHhCCC---eEEEEecCCCCCCe---ee--ecCC----CccCCcc------HHHHHHHHHHHHcCCEEEcCCEE------
Confidence            999987   79999987653211   00  0000    0111110      00122346778899999998644      


Q ss_pred             CcEEEeCCC-eEEEeccEEeccCC-CCCcCCCCCCCCcCcEEEecCHHHHHHHHH--------hhhcCCeEEEEcCChHH
Q 012165          150 KQTLITNSG-KLLKYGSLIVATGC-TASRFPEKIGGYLPGVHYIRDVADADALIS--------SLEKAKKVVVVGGGYIG  219 (469)
Q Consensus       150 ~~~v~~~~g-~~~~yd~lVlAtG~-~~~~~~~~~g~~~~~v~~~~~~~~~~~~~~--------~~~~~~~vvVvG~G~~g  219 (469)
                      .+.+++++. +.+.||+||||||+ .|+ .+.++|.+.+++++..++.+...+..        ....+++|+|||+|++|
T Consensus       215 ~~~v~~~~~~~~~~~d~viiAtGa~~~~-~l~ipG~~~~gV~~~~~~l~~~~~~~~~~~~~~~~~~~gk~VvVIGgG~va  293 (464)
T PRK12831        215 GKTVTIDELLEEEGFDAVFIGSGAGLPK-FMGIPGENLNGVFSANEFLTRVNLMKAYKPEYDTPIKVGKKVAVVGGGNVA  293 (464)
T ss_pred             CCcCCHHHHHhccCCCEEEEeCCCCCCC-CCCCCCcCCcCcEEHHHHHHHHHhcccccccccCcccCCCeEEEECCcHHH
Confidence            223333332 23579999999998 576 45678888888887665544322211        12467999999999999


Q ss_pred             HHHHHHHHhCCCeEee------------eH--HHHHHcCcEEEcCCeEEEEEeCCCCcEEEEEcC---------------
Q 012165          220 MEVAAAAVGWKLDTTR------------YE--QLYQQNGVKFVKGASIKNLEAGSDGRVAAVKLE---------------  270 (469)
Q Consensus       220 ~e~A~~l~~~g~~v~~------------~~--~~l~~~gV~~~~~~~v~~i~~~~~~~v~~v~~~---------------  270 (469)
                      +|+|..+.++|.+|+.            ..  +.+++.||++++++.+.++..++++++.++++.               
T Consensus       294 ~d~A~~l~r~Ga~Vtlv~r~~~~~m~a~~~e~~~a~~eGV~i~~~~~~~~i~~~~~g~v~~v~~~~~~~~~~d~~Gr~~~  373 (464)
T PRK12831        294 MDAARTALRLGAEVHIVYRRSEEELPARVEEVHHAKEEGVIFDLLTNPVEILGDENGWVKGMKCIKMELGEPDASGRRRP  373 (464)
T ss_pred             HHHHHHHHHcCCEEEEEeecCcccCCCCHHHHHHHHHcCCEEEecccceEEEecCCCeEEEEEEEEEEecCcCCCCCccc
Confidence            9999999999999871            11  246678999999999999976556776655542               


Q ss_pred             ---CCC--EEeCCEEEEccCCccCCchhhh-cCCccc-CCCEEeCCC-CCCCCCceEEeccccccCCccCCcccccchHH
Q 012165          271 ---DGS--TIDADTIVIGIGAKPTVSPFER-VGLNSS-VGGIQVDGQ-FRTRMPGIFAIGDVAAFPLKMYDRTARVEHVD  342 (469)
Q Consensus       271 ---~g~--~i~~D~vi~a~G~~p~~~~~~~-~gl~~~-~g~i~Vd~~-~~t~~~~Vfa~GD~a~~~~~~~~~~~~~~~~~  342 (469)
                         +|+  ++++|.||+++|..|++.++.. .|+..+ +|+|.||++ ++|+.|+|||+|||+..+.          .+.
T Consensus       374 ~~~~g~~~~i~~D~Vi~AiG~~p~~~~~~~~~gl~~~~~G~i~vd~~~~~Ts~pgVfAaGD~~~g~~----------~v~  443 (464)
T PRK12831        374 VEIEGSEFVLEVDTVIMSLGTSPNPLISSTTKGLKINKRGCIVADEETGLTSKEGVFAGGDAVTGAA----------TVI  443 (464)
T ss_pred             eecCCceEEEECCEEEECCCCCCChhhhcccCCceECCCCcEEECCCCCccCCCCEEEeCCCCCCch----------HHH
Confidence               222  6999999999999999888776 677765 578999987 9999999999999987532          455


Q ss_pred             HHHHHHHHHHHHHhc
Q 012165          343 HARQSAQHCIKALLS  357 (469)
Q Consensus       343 ~A~~~a~~~a~~i~~  357 (469)
                      .|+.+|+.+|.+|..
T Consensus       444 ~Ai~~G~~AA~~I~~  458 (464)
T PRK12831        444 LAMGAGKKAAKAIDE  458 (464)
T ss_pred             HHHHHHHHHHHHHHH
Confidence            788999999988853

>PRK06116 glutathione reductase; Validated

Probab=100.00  E-value=5.7e-40  Score=333.68  Aligned_cols=374  Identities=20%  Similarity=0.288  Sum_probs=253.5

Q ss_pred             CCCcEEEEcCcHHHHHHHHHHHHcCCCCCcEEEEcCCCCCC--CCCCCC-cccccC-----------------CCCCCCC
Q 012165           50 ENREFVIVGGGNAAGYAARTFVEHGMADGRLCIVSKEAYAP--YERPAL-TKGYLF-----------------PLDKKPA  109 (469)
Q Consensus        50 ~~~~vvIIGgG~AGl~aA~~L~~~g~~~~~V~vie~~~~~~--~~~~~l-~~~~~~-----------------~~~~~~~  109 (469)
                      ..+||+||||||||++||..|+++|.   +|+|||++..-+  .++-.+ +|.++.                 .......
T Consensus         3 ~~~DvvVIG~GpaG~~aA~~~a~~G~---~V~liE~~~~GG~c~n~gciP~k~l~~~~~~~~~~~~~~~~~g~~~~~~~~   79 (450)
T PRK06116          3 KDYDLIVIGGGSGGIASANRAAMYGA---KVALIEAKRLGGTCVNVGCVPKKLMWYGAQIAEAFHDYAPGYGFDVTENKF   79 (450)
T ss_pred             CCCCEEEECCCHHHHHHHHHHHHCCC---eEEEEeccchhhhhhccCcchHHHHHHHHHHHHHHHhHHHhcCCCCCCCCc
Confidence            35899999999999999999999987   799999863211  011111 110000                 0000000


Q ss_pred             CCCCCcccc---CCCCCCCCHhHHHHCCcEEEeCCcEEEEeCCCcEEEeCCCeEEEeccEEeccCCCCCcCCCCCCCCcC
Q 012165          110 RLPGFHTCV---GSGGERQTPEWYKEKGIEMIYQDPVTSIDIEKQTLITNSGKLLKYGSLIVATGCTASRFPEKIGGYLP  186 (469)
Q Consensus       110 ~~~~~~~~~---~~~~~~~~~~~~~~~~i~~~~~~~v~~id~~~~~v~~~~g~~~~yd~lVlAtG~~~~~~~~~~g~~~~  186 (469)
                      ++..+....   -..........+.+.+++++.+ ++..++.  ++|++ +++++.||+||||||++|. .|.++|.  +
T Consensus        80 ~~~~~~~~~~~~~~~~~~~~~~~l~~~gv~~~~g-~~~~v~~--~~v~~-~g~~~~~d~lViATGs~p~-~p~i~g~--~  152 (450)
T PRK06116         80 DWAKLIANRDAYIDRLHGSYRNGLENNGVDLIEG-FARFVDA--HTVEV-NGERYTADHILIATGGRPS-IPDIPGA--E  152 (450)
T ss_pred             CHHHHHHHHHHHHHHHHHHHHHHHHhCCCEEEEE-EEEEccC--CEEEE-CCEEEEeCEEEEecCCCCC-CCCCCCc--c
Confidence            110000000   0000011123355679999986 6666664  57777 6778999999999999986 4555542  1


Q ss_pred             cEEEecCHHHHHHHHHhhhcCCeEEEEcCChHHHHHHHHHHhCCCeEe------------------eeHHHHHHcCcEEE
Q 012165          187 GVHYIRDVADADALISSLEKAKKVVVVGGGYIGMEVAAAAVGWKLDTT------------------RYEQLYQQNGVKFV  248 (469)
Q Consensus       187 ~v~~~~~~~~~~~~~~~~~~~~~vvVvG~G~~g~e~A~~l~~~g~~v~------------------~~~~~l~~~gV~~~  248 (469)
                         ...+   .+.+......+++++|||+|.+|+|+|..|.++|.+++                  .+.+.+++.||+++
T Consensus       153 ---~~~~---~~~~~~~~~~~~~vvViGgG~~g~E~A~~l~~~g~~Vtlv~~~~~~l~~~~~~~~~~l~~~L~~~GV~i~  226 (450)
T PRK06116        153 ---YGIT---SDGFFALEELPKRVAVVGAGYIAVEFAGVLNGLGSETHLFVRGDAPLRGFDPDIRETLVEEMEKKGIRLH  226 (450)
T ss_pred             ---eeEc---hhHhhCccccCCeEEEECCCHHHHHHHHHHHHcCCeEEEEecCCCCccccCHHHHHHHHHHHHHCCcEEE
Confidence               1211   22222223457899999999999999999999999987                  34567889999999


Q ss_pred             cCCeEEEEEeCCCCcEEEEEcCCCCEEeCCEEEEccCCccCCch--hhhcCCccc-CCCEEeCCCCCCCCCceEEecccc
Q 012165          249 KGASIKNLEAGSDGRVAAVKLEDGSTIDADTIVIGIGAKPTVSP--FERVGLNSS-VGGIQVDGQFRTRMPGIFAIGDVA  325 (469)
Q Consensus       249 ~~~~v~~i~~~~~~~v~~v~~~~g~~i~~D~vi~a~G~~p~~~~--~~~~gl~~~-~g~i~Vd~~~~t~~~~Vfa~GD~a  325 (469)
                      +++++.+++.++++.+ .+.+.+|+++++|.||+++|.+|+++.  ++..+++.+ +|+|.||+++||++|||||+|||+
T Consensus       227 ~~~~V~~i~~~~~g~~-~v~~~~g~~i~~D~Vv~a~G~~p~~~~l~l~~~g~~~~~~G~i~vd~~~~Ts~~~IyA~GD~~  305 (450)
T PRK06116        227 TNAVPKAVEKNADGSL-TLTLEDGETLTVDCLIWAIGREPNTDGLGLENAGVKLNEKGYIIVDEYQNTNVPGIYAVGDVT  305 (450)
T ss_pred             CCCEEEEEEEcCCceE-EEEEcCCcEEEeCEEEEeeCCCcCCCCCCchhcCceECCCCcEecCCCCCcCCCCEEEEeecC
Confidence            9999999986544433 477788989999999999999999985  577888875 567999999999999999999998


Q ss_pred             ccCCccCCcccccchHHHHHHHHHHHHHHHhcCCC---CCCCCCCceeeecccccCCCcceeeEEeecCCC-------c-
Q 012165          326 AFPLKMYDRTARVEHVDHARQSAQHCIKALLSAQT---HTYDYLPYFYSRVFEYEGSPRKVWWQFFGDNVG-------E-  394 (469)
Q Consensus       326 ~~~~~~~~~~~~~~~~~~A~~~a~~~a~~i~~~~~---~~~~~~p~~~~~~~~~~g~~~~~~~~~~G~~~~-------~-  394 (469)
                      ..+.          ....|..+|+.+|+||++...   ..|..+|+   ..|+++.      +..+|.+..       + 
T Consensus       306 ~~~~----------~~~~A~~~g~~aa~~i~g~~~~~~~~~~~~p~---~if~~p~------~a~vGlte~~a~~~~~~~  366 (450)
T PRK06116        306 GRVE----------LTPVAIAAGRRLSERLFNNKPDEKLDYSNIPT---VVFSHPP------IGTVGLTEEEAREQYGED  366 (450)
T ss_pred             CCcC----------cHHHHHHHHHHHHHHHhCCCCCCcCCcCCCCe---EEeCCCc------cEEeeCCHHHHHHhCCCC
Confidence            6432          345699999999999997433   23455664   4455432      344554321       1 


Q ss_pred             -EEE-Ecc-----------CCCcEEEEEEe--CCEEEEEEeecCChHHhHH-HHHHHhCCCCCCh--hhhcCCCcHHHHH
Q 012165          395 -TIE-IGN-----------FDPKIATFWID--SGKLKGVLVESGSPEEFQL-LPTLARSQPFVDK--AKLQQASSVEEAL  456 (469)
Q Consensus       395 -~~~-~~~-----------~~~~~~~~~~~--~~~l~g~~~~~~~~~~~~~-~~~~~~~~~~~~~--~~~~~~~~~~~~~  456 (469)
                       ... ...           ....+.|++++  +++|+|+++++.++.++.. +..+|+.+.+++.  ..++.|||++|++
T Consensus       367 ~~~~~~~~~~~~~~~~~~~~~~g~~klv~~~~~~~ilG~~~~g~~a~e~i~~~~~ai~~~~t~~~l~~~~~~hPt~~e~~  446 (450)
T PRK06116        367 NVKVYRSSFTPMYTALTGHRQPCLMKLVVVGKEEKVVGLHGIGFGADEMIQGFAVAIKMGATKADFDNTVAIHPTAAEEF  446 (450)
T ss_pred             cEEEEEEecchhHHHHhcCCCceEEEEEEECCCCEEEEEEEECCCHHHHHHHHHHHHHCCCCHHHHhcccccCCChHHHH
Confidence             111 100           11236777774  5999999987777765544 5556788888762  3347899999999


Q ss_pred             HHH
Q 012165          457 EIA  459 (469)
Q Consensus       457 ~~~  459 (469)
                      ..+
T Consensus       447 ~~~  449 (450)
T PRK06116        447 VTM  449 (450)
T ss_pred             hhc
Confidence            876

>TIGR01316 gltA glutamate synthase (NADPH), homotetrameric

Probab=100.00  E-value=4.3e-41  Score=340.13  Aligned_cols=317  Identities=21%  Similarity=0.225  Sum_probs=236.4

Q ss_pred             cccccccccccccccc--CCCCcccccc------cCCcccccccccccc---------cccCCCCCCcEEEEcCcHHHHH
Q 012165            3 SVSNSLSFKHGLSLWC--PQSPSLHRIR------HSSAKNFQRRGFVVA---------YSSFANENREFVIVGGGNAAGY   65 (469)
Q Consensus         3 ~~~~~~~~~~~~~~~~--~~~~~~~~~~------~~~~~~~~~~~~~~~---------~~~~~~~~~~vvIIGgG~AGl~   65 (469)
                      .++||||.+||++|++  +|+..|.+..      .++++..+.|+..+.         ..+.....++|+|||||+||++
T Consensus        68 ~~~~p~p~~~grvC~~~~~Ce~~C~~~~~~~~~~~~v~i~~l~~~~~~~~~~~~~~~~~~~~~~~~~~V~IIG~G~aGl~  147 (449)
T TIGR01316        68 KTTSLLPAICGRVCPQERQCEGQCTVGKMFKDVGKPVSIGALERFVADWERQHGIETEPEKAPSTHKKVAVIGAGPAGLA  147 (449)
T ss_pred             HHhCChhHHhccCCCCccchHhhCcCCCcCCCCCCCccHHHHHHHHHhHHHhcCCCcCCCCCCCCCCEEEEECcCHHHHH
Confidence            5789999999999999  9999998642      678888888866432         1123345789999999999999


Q ss_pred             HHHHHHHcCCCCCcEEEEcCCCCCCCCCCCCcccccCCCCCCCCCCCCCccccCCCCCCCCHhHHHHCCcEEEeCCcEEE
Q 012165           66 AARTFVEHGMADGRLCIVSKEAYAPYERPALTKGYLFPLDKKPARLPGFHTCVGSGGERQTPEWYKEKGIEMIYQDPVTS  145 (469)
Q Consensus        66 aA~~L~~~g~~~~~V~vie~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~v~~  145 (469)
                      +|..|++.|+   +|+|+|+++.+...   +.  +-.+.    .+++.       +......+++++.+++++++..+  
T Consensus       148 aA~~l~~~G~---~V~vie~~~~~GG~---l~--~gip~----~~~~~-------~~~~~~~~~l~~~gv~~~~~~~v--  206 (449)
T TIGR01316       148 CASELAKAGH---SVTVFEALHKPGGV---VT--YGIPE----FRLPK-------EIVVTEIKTLKKLGVTFRMNFLV--  206 (449)
T ss_pred             HHHHHHHCCC---cEEEEecCCCCCcE---ee--ecCCC----ccCCH-------HHHHHHHHHHHhCCcEEEeCCcc--
Confidence            9999999987   79999998654211   00  00000    01110       00122345677889999998543  


Q ss_pred             EeCCCcEEEeCCCeEEEeccEEeccCC-CCCcCCCCCCCCcCcEEEecCHHHHHHHHH---------hhhcCCeEEEEcC
Q 012165          146 IDIEKQTLITNSGKLLKYGSLIVATGC-TASRFPEKIGGYLPGVHYIRDVADADALIS---------SLEKAKKVVVVGG  215 (469)
Q Consensus       146 id~~~~~v~~~~g~~~~yd~lVlAtG~-~~~~~~~~~g~~~~~v~~~~~~~~~~~~~~---------~~~~~~~vvVvG~  215 (469)
                          .+.+++++.. ..||+||||||+ .|+ .+.++|.+.+++++..++.+...+..         ....+++++|||+
T Consensus       207 ----~~~v~~~~~~-~~yd~viiAtGa~~p~-~~~ipG~~~~gv~~~~~~l~~~~~~~~~~~~~~~~~~~~gk~VvVIGg  280 (449)
T TIGR01316       207 ----GKTATLEELF-SQYDAVFIGTGAGLPK-LMNIPGEELCGVYSANDFLTRANLMKAYEFPHADTPVYAGKSVVVIGG  280 (449)
T ss_pred             ----CCcCCHHHHH-hhCCEEEEeCCCCCCC-cCCCCCCCCCCcEEHHHHHHHHhhcccccccccCCcccCCCeEEEECC
Confidence                2344444332 579999999998 565 56678887888877655443322221         1235789999999


Q ss_pred             ChHHHHHHHHHHhCCCeEe--------------eeHHHHHHcCcEEEcCCeEEEEEeCCCCcEEEEEcC---------CC
Q 012165          216 GYIGMEVAAAAVGWKLDTT--------------RYEQLYQQNGVKFVKGASIKNLEAGSDGRVAAVKLE---------DG  272 (469)
Q Consensus       216 G~~g~e~A~~l~~~g~~v~--------------~~~~~l~~~gV~~~~~~~v~~i~~~~~~~v~~v~~~---------~g  272 (469)
                      |.+|+|+|..+.++|.+|+              ...+.+++.||++++++.+.++..++++++..|++.         +|
T Consensus       281 G~~a~d~A~~l~~~G~~Vtlv~~~~~~~~~~~~~~~~~l~~~GV~~~~~~~~~~i~~~~~g~v~~v~~~~~~~~~~~~~g  360 (449)
T TIGR01316       281 GNTAVDSARTALRLGAEVHCLYRRTREDMTARVEEIAHAEEEGVKFHFLCQPVEIIGDEEGNVRAVKFRKMDCQEQIDSG  360 (449)
T ss_pred             CHHHHHHHHHHHHcCCEEEEEeecCcccCCCCHHHHHHHHhCCCEEEeccCcEEEEEcCCCeEEEEEEEEEEecCcCCCC
Confidence            9999999999999999987              112457889999999999999976556666666543         23


Q ss_pred             -----------CEEeCCEEEEccCCccCCchhhhcCCccc-CCCEEeCCCCCCCCCceEEeccccccCCccCCcccccch
Q 012165          273 -----------STIDADTIVIGIGAKPTVSPFERVGLNSS-VGGIQVDGQFRTRMPGIFAIGDVAAFPLKMYDRTARVEH  340 (469)
Q Consensus       273 -----------~~i~~D~vi~a~G~~p~~~~~~~~gl~~~-~g~i~Vd~~~~t~~~~Vfa~GD~a~~~~~~~~~~~~~~~  340 (469)
                                 +++++|.||+++|..|++.+++..+++.+ +|+|.||++++|+.|+|||+|||+..+.          .
T Consensus       361 ~~~~~~~~~~~~~i~~D~Vi~AiG~~p~~~~l~~~gl~~~~~G~i~vd~~~~Ts~~~VfA~GD~~~g~~----------~  430 (449)
T TIGR01316       361 ERRFLPCGDAECKLEADAVIVAIGNGSNPIMAETTRLKTSERGTIVVDEDQRTSIPGVFAGGDIILGAA----------T  430 (449)
T ss_pred             CeeeeecCCceEEEECCEEEECCCCCCCchhhhccCcccCCCCeEEeCCCCccCCCCEEEecCCCCCcH----------H
Confidence                       26999999999999999988888888876 5789999999999999999999986432          5


Q ss_pred             HHHHHHHHHHHHHHHh
Q 012165          341 VDHARQSAQHCIKALL  356 (469)
Q Consensus       341 ~~~A~~~a~~~a~~i~  356 (469)
                      +..|+.+|+.+|.+|.
T Consensus       431 v~~Ai~~G~~AA~~I~  446 (449)
T TIGR01316       431 VIRAMGQGKRAAKSIN  446 (449)
T ss_pred             HHHHHHHHHHHHHHHH
Confidence            6679999999999985

This protein is homologous to the small subunit of NADPH and NADH forms of glutamate synthase as found in eukaryotes and some bacteria. This protein is found in numerous species having no homolog of the glutamate synthase large subunit. The prototype of the family, from Pyrococcus sp. KOD1, was shown to be active as a homotetramer and to require NADPH.

>PLN02507 glutathione reductase

Probab=100.00  E-value=4.3e-39  Score=328.90  Aligned_cols=379  Identities=19%  Similarity=0.240  Sum_probs=256.7

Q ss_pred             CCCCcEEEEcCcHHHHHHHHHHHHcCCCCCcEEEEcCC---------CCCCCC---CCCC-cccccCC------------
Q 012165           49 NENREFVIVGGGNAAGYAARTFVEHGMADGRLCIVSKE---------AYAPYE---RPAL-TKGYLFP------------  103 (469)
Q Consensus        49 ~~~~~vvIIGgG~AGl~aA~~L~~~g~~~~~V~vie~~---------~~~~~~---~~~l-~~~~~~~------------  103 (469)
                      ..+||++||||||||+.||..++++|.   +|+|||+.         ..++..   +-.. +|.++..            
T Consensus        23 ~~~yDvvVIG~GpaG~~aA~~a~~~G~---~V~liE~~~~~~~~~~~~~~GGtc~n~GciPsK~l~~~a~~~~~~~~~~~   99 (499)
T PLN02507         23 HYDFDLFVIGAGSGGVRAARFSANFGA---KVGICELPFHPISSESIGGVGGTCVIRGCVPKKILVYGATFGGEFEDAKN   99 (499)
T ss_pred             ccccCEEEECCCHHHHHHHHHHHHCCC---eEEEEeccCcccccccCCCccceeeccCchhHHHHHHHHHHHHHHHHHHh
Confidence            446899999999999999999999987   79999962         111111   0011 1211100            


Q ss_pred             --CC---CCCCCCCCCcccc---CCCCCCCCHhHHHHCCcEEEeCCcEEEEeCCCcEEEeCCCe--EEEeccEEeccCCC
Q 012165          104 --LD---KKPARLPGFHTCV---GSGGERQTPEWYKEKGIEMIYQDPVTSIDIEKQTLITNSGK--LLKYGSLIVATGCT  173 (469)
Q Consensus       104 --~~---~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~i~~~~~~~v~~id~~~~~v~~~~g~--~~~yd~lVlAtG~~  173 (469)
                        ..   ....++..+....   -..........+...+++++.+ ++..+++...+|++.+|+  ++.||+||||||++
T Consensus       100 ~G~~~~~~~~id~~~~~~~~~~~~~~~~~~~~~~l~~~gV~~i~g-~a~~vd~~~v~V~~~~g~~~~~~~d~LIIATGs~  178 (499)
T PLN02507        100 YGWEINEKVDFNWKKLLQKKTDEILRLNGIYKRLLANAGVKLYEG-EGKIVGPNEVEVTQLDGTKLRYTAKHILIATGSR  178 (499)
T ss_pred             cCcccCCCCccCHHHHHHHHHHHHHHHHHHHHHHHHhCCcEEEEE-EEEEecCCEEEEEeCCCcEEEEEcCEEEEecCCC
Confidence              00   0000000000000   0000001123345579999986 888899888888888876  58899999999999


Q ss_pred             CCcCCCCCCCCcCcEEEecCHHHHHHHHHhhhcCCeEEEEcCChHHHHHHHHHHhCCCeEe------------------e
Q 012165          174 ASRFPEKIGGYLPGVHYIRDVADADALISSLEKAKKVVVVGGGYIGMEVAAAAVGWKLDTT------------------R  235 (469)
Q Consensus       174 ~~~~~~~~g~~~~~v~~~~~~~~~~~~~~~~~~~~~vvVvG~G~~g~e~A~~l~~~g~~v~------------------~  235 (469)
                      |. .|.++|.+  .   ..+..+...+   ...+++++|||+|++|+|+|..+.++|.+|+                  .
T Consensus       179 p~-~p~ipG~~--~---~~~~~~~~~l---~~~~k~vvVIGgG~ig~E~A~~l~~~G~~Vtli~~~~~~l~~~d~~~~~~  249 (499)
T PLN02507        179 AQ-RPNIPGKE--L---AITSDEALSL---EELPKRAVVLGGGYIAVEFASIWRGMGATVDLFFRKELPLRGFDDEMRAV  249 (499)
T ss_pred             CC-CCCCCCcc--c---eechHHhhhh---hhcCCeEEEECCcHHHHHHHHHHHHcCCeEEEEEecCCcCcccCHHHHHH
Confidence            87 45555532  1   1222333332   2357899999999999999999999999988                  3


Q ss_pred             eHHHHHHcCcEEEcCCeEEEEEeCCCCcEEEEEcCCCCEEeCCEEEEccCCccCCch--hhhcCCccc-CCCEEeCCCCC
Q 012165          236 YEQLYQQNGVKFVKGASIKNLEAGSDGRVAAVKLEDGSTIDADTIVIGIGAKPTVSP--FERVGLNSS-VGGIQVDGQFR  312 (469)
Q Consensus       236 ~~~~l~~~gV~~~~~~~v~~i~~~~~~~v~~v~~~~g~~i~~D~vi~a~G~~p~~~~--~~~~gl~~~-~g~i~Vd~~~~  312 (469)
                      +.+.|++.||++++++++++++..+ +.+ .+.+.+|+++++|.|++++|++||+++  +++++++.+ +|+|.||+++|
T Consensus       250 l~~~l~~~GI~i~~~~~V~~i~~~~-~~~-~v~~~~g~~i~~D~vl~a~G~~pn~~~l~l~~~gl~~~~~G~I~Vd~~~~  327 (499)
T PLN02507        250 VARNLEGRGINLHPRTNLTQLTKTE-GGI-KVITDHGEEFVADVVLFATGRAPNTKRLNLEAVGVELDKAGAVKVDEYSR  327 (499)
T ss_pred             HHHHHHhCCCEEEeCCEEEEEEEeC-CeE-EEEECCCcEEEcCEEEEeecCCCCCCCCCchhhCcEECCCCcEecCCCCc
Confidence            4567889999999999999998543 333 467778889999999999999999987  678888875 57799999999


Q ss_pred             CCCCceEEeccccccCCccCCcccccchHHHHHHHHHHHHHHHhcCCCC--CCCCCCceeeecccccCCCcceeeEEeec
Q 012165          313 TRMPGIFAIGDVAAFPLKMYDRTARVEHVDHARQSAQHCIKALLSAQTH--TYDYLPYFYSRVFEYEGSPRKVWWQFFGD  390 (469)
Q Consensus       313 t~~~~Vfa~GD~a~~~~~~~~~~~~~~~~~~A~~~a~~~a~~i~~~~~~--~~~~~p~~~~~~~~~~g~~~~~~~~~~G~  390 (469)
                      |++|||||+|||+..+.          ....|..||+.+++||+++...  .+..+|+   ..|+++-      +..+|.
T Consensus       328 Ts~p~IyAiGDv~~~~~----------l~~~A~~qg~~aa~ni~g~~~~~~~~~~~p~---~if~~p~------ia~vGl  388 (499)
T PLN02507        328 TNIPSIWAIGDVTNRIN----------LTPVALMEGTCFAKTVFGGQPTKPDYENVAC---AVFCIPP------LSVVGL  388 (499)
T ss_pred             CCCCCEEEeeEcCCCCc----------cHHHHHHHHHHHHHHHcCCCCCcCCCCCCCe---EEECCCc------cEEEeC
Confidence            99999999999997432          3446999999999999865332  2344553   4555432      334444


Q ss_pred             CCC--------cEEE------------EccCCCcEEEEEEe--CCEEEEEEeecCChHHhHH-HHHHHhCCCCCCh--hh
Q 012165          391 NVG--------ETIE------------IGNFDPKIATFWID--SGKLKGVLVESGSPEEFQL-LPTLARSQPFVDK--AK  445 (469)
Q Consensus       391 ~~~--------~~~~------------~~~~~~~~~~~~~~--~~~l~g~~~~~~~~~~~~~-~~~~~~~~~~~~~--~~  445 (469)
                      +..        +...            .+.....+.|++++  +++|+|+++++.++.++.. +..+|+.+.+++.  ..
T Consensus       389 te~ea~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~Kli~d~~t~~ilG~~~vg~~a~e~i~~~~~ai~~~~t~~~l~~~  468 (499)
T PLN02507        389 SEEEAVEQAKGDILVFTSSFNPMKNTISGRQEKTVMKLIVDAETDKVLGASMCGPDAPEIMQGIAVALKCGATKAQFDST  468 (499)
T ss_pred             CHHHHHhccCCCEEEEEeecCccccccccCCCCEEEEEEEECCCCEEEEEEEECCCHHHHHHHHHHHHHCCCCHHHHhhc
Confidence            321        1100            01111236777764  5899999987777755444 4556788887763  33


Q ss_pred             hcCCCcHHHHHHHHHh
Q 012165          446 LQQASSVEEALEIARA  461 (469)
Q Consensus       446 ~~~~~~~~~~~~~~~~  461 (469)
                      ++.|||++|.+..++.
T Consensus       469 ~~~hPt~~E~~~~~~~  484 (499)
T PLN02507        469 VGIHPSAAEEFVTMRS  484 (499)
T ss_pred             CcCCCChHHHHHHHHh
Confidence            4789999999998763

>TIGR01424 gluta_reduc_2 glutathione-disulfide reductase, plant

Probab=100.00  E-value=7.3e-40  Score=331.87  Aligned_cols=373  Identities=18%  Similarity=0.257  Sum_probs=251.3

Q ss_pred             CCcEEEEcCcHHHHHHHHHHHHcCCCCCcEEEEcCCCCCCCC---CCCC-cccccCC--------------C--CCCCCC
Q 012165           51 NREFVIVGGGNAAGYAARTFVEHGMADGRLCIVSKEAYAPYE---RPAL-TKGYLFP--------------L--DKKPAR  110 (469)
Q Consensus        51 ~~~vvIIGgG~AGl~aA~~L~~~g~~~~~V~vie~~~~~~~~---~~~l-~~~~~~~--------------~--~~~~~~  110 (469)
                      +|||+||||||||++||..++++|.   +|+|+|++. ++..   +-.. +|.++..              .  .....+
T Consensus         2 ~yDvvVIG~GpaG~~aA~~aa~~G~---~V~lie~~~-~GG~c~~~gciPsk~l~~~a~~~~~~~~~~~~g~~~~~~~~~   77 (446)
T TIGR01424         2 DYDLFVIGAGSGGVRAARLAANHGA---KVAIAEEPR-VGGTCVIRGCVPKKLMVYGSTFGGEFEDAAGYGWTVGKARFD   77 (446)
T ss_pred             cccEEEECCCHHHHHHHHHHHhCCC---cEEEEecCc-cCceeecCCcCchHHHHHHHHHHHHHhhhHhcCcCCCCCCcC
Confidence            5899999999999999999999998   799999853 2211   0011 1111000              0  000000


Q ss_pred             CCCCccc---cCCCCCCCCHhHHHHCCcEEEeCCcEEEEeCCCcEEEeCCCeEEEeccEEeccCCCCCcCCCCCCCCcCc
Q 012165          111 LPGFHTC---VGSGGERQTPEWYKEKGIEMIYQDPVTSIDIEKQTLITNSGKLLKYGSLIVATGCTASRFPEKIGGYLPG  187 (469)
Q Consensus       111 ~~~~~~~---~~~~~~~~~~~~~~~~~i~~~~~~~v~~id~~~~~v~~~~g~~~~yd~lVlAtG~~~~~~~~~~g~~~~~  187 (469)
                      +......   .-..........+++.+++++.+ ++..++++...+. .+|+++.||+||||||++|. .|.++|.+   
T Consensus        78 ~~~~~~~~~~~~~~~~~~~~~~l~~~gV~~~~g-~~~~v~~~~v~v~-~~g~~~~~d~lIiATGs~p~-~p~i~G~~---  151 (446)
T TIGR01424        78 WKKLLQKKDDEIARLSGLYKRLLANAGVELLEG-RARLVGPNTVEVL-QDGTTYTAKKILIAVGGRPQ-KPNLPGHE---  151 (446)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHhCCcEEEEE-EEEEecCCEEEEe-cCCeEEEcCEEEEecCCcCC-CCCCCCcc---
Confidence            0000000   00000112234456789999886 8888887644443 45778999999999999986 45555532   


Q ss_pred             EEEecCHHHHHHHHHhhhcCCeEEEEcCChHHHHHHHHHHhCCCeEe------------------eeHHHHHHcCcEEEc
Q 012165          188 VHYIRDVADADALISSLEKAKKVVVVGGGYIGMEVAAAAVGWKLDTT------------------RYEQLYQQNGVKFVK  249 (469)
Q Consensus       188 v~~~~~~~~~~~~~~~~~~~~~vvVvG~G~~g~e~A~~l~~~g~~v~------------------~~~~~l~~~gV~~~~  249 (469)
                        ...+   .+........+++++|||+|++|+|+|..++++|.+++                  .+.+.+++.||++++
T Consensus       152 --~~~~---~~~~~~l~~~~~~vvVIGgG~~g~E~A~~l~~~G~~Vtli~~~~~~l~~~d~~~~~~l~~~l~~~gV~i~~  226 (446)
T TIGR01424       152 --LGIT---SNEAFHLPTLPKSILILGGGYIAVEFAGIWRGLGVQVTLIYRGELILRGFDDDMRALLARNMEGRGIRIHP  226 (446)
T ss_pred             --ceec---hHHhhcccccCCeEEEECCcHHHHHHHHHHHHcCCeEEEEEeCCCCCcccCHHHHHHHHHHHHHCCCEEEe
Confidence              1111   12222222357899999999999999999999999887                  345667889999999


Q ss_pred             CCeEEEEEeCCCCcEEEEEcCCCCEEeCCEEEEccCCccCCch--hhhcCCccc-CCCEEeCCCCCCCCCceEEeccccc
Q 012165          250 GASIKNLEAGSDGRVAAVKLEDGSTIDADTIVIGIGAKPTVSP--FERVGLNSS-VGGIQVDGQFRTRMPGIFAIGDVAA  326 (469)
Q Consensus       250 ~~~v~~i~~~~~~~v~~v~~~~g~~i~~D~vi~a~G~~p~~~~--~~~~gl~~~-~g~i~Vd~~~~t~~~~Vfa~GD~a~  326 (469)
                      ++.+++++..+++ + .+.+.+|+++++|.||+|+|.+||++.  +++.+++.+ +|+|.||+++||++|||||+|||+.
T Consensus       227 ~~~v~~i~~~~~~-~-~v~~~~g~~i~~D~viva~G~~pn~~~l~l~~~g~~~~~~G~i~vd~~~~Ts~~~IyA~GD~~~  304 (446)
T TIGR01424       227 QTSLTSITKTDDG-L-KVTLSHGEEIVADVVLFATGRSPNTKGLGLEAAGVELNDAGAIAVDEYSRTSIPSIYAVGDVTD  304 (446)
T ss_pred             CCEEEEEEEcCCe-E-EEEEcCCcEeecCEEEEeeCCCcCCCcCCccccCeEECCCCcEEeCCCCccCCCCEEEeeccCC
Confidence            9999999854333 2 466778889999999999999999875  578888765 5779999999999999999999996


Q ss_pred             cCCccCCcccccchHHHHHHHHHHHHHHHhcCCCCCC--CCCCceeeecccccCCCcceeeEEeecCCC--------cEE
Q 012165          327 FPLKMYDRTARVEHVDHARQSAQHCIKALLSAQTHTY--DYLPYFYSRVFEYEGSPRKVWWQFFGDNVG--------ETI  396 (469)
Q Consensus       327 ~~~~~~~~~~~~~~~~~A~~~a~~~a~~i~~~~~~~~--~~~p~~~~~~~~~~g~~~~~~~~~~G~~~~--------~~~  396 (469)
                      .+.          ....|..+|+.+++||+++...++  ..+|+   ..|+.+.      +..+|.+..        +..
T Consensus       305 ~~~----------l~~~A~~~g~~~a~~i~~~~~~~~~~~~~p~---~if~~p~------ia~vG~te~~a~~~~~~~~~  365 (446)
T TIGR01424       305 RIN----------LTPVAIMEATCFANTEFGNNPTKFDHDLIAT---AVFSQPP------LGTVGLTEEEAREKFTGDIL  365 (446)
T ss_pred             Ccc----------chhHHHHHHHHHHHHHhcCCCCccCcCCCCe---EEeCCch------hEEEECCHHHHHhhcCCCEE
Confidence            432          334599999999999997443333  45554   3454331      334454321        110


Q ss_pred             -EE-----------ccCCCcEEEEEEe--CCEEEEEEeecCChHHhHH-HHHHHhCCCCCCh--hhhcCCCcHHHHHHHH
Q 012165          397 -EI-----------GNFDPKIATFWID--SGKLKGVLVESGSPEEFQL-LPTLARSQPFVDK--AKLQQASSVEEALEIA  459 (469)
Q Consensus       397 -~~-----------~~~~~~~~~~~~~--~~~l~g~~~~~~~~~~~~~-~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~  459 (469)
                       ..           ......+.|+.++  +++|+|+++++.++.++.. +..+|+.+.+++.  ..++.|||+.|++..+
T Consensus       366 ~~~~~~~~~~~~~~~~~~~g~~kli~d~~~~~ilG~~~~g~~a~e~i~~~~~ai~~~~t~~~l~~~~~~hPt~~e~~~~~  445 (446)
T TIGR01424       366 VYRAGFRPMKNTFSGRQEKTLMKLVVDEKDDKVLGAHMVGPDAAEIIQGIAIALKMGATKADFDSTVGIHPSSAEEFVTM  445 (446)
T ss_pred             EEEEecCchHhHhhcCCCceEEEEEEeCCCCEEEEEEEECCCHHHHHHHHHHHHHcCCCHHHHhhccccCCChHHHHhhc
Confidence             00           1111236777774  5999999998877766554 4556788888773  3347899999998765

The tripeptide glutathione is an important reductant, e.g., for maintaining the cellular thiol/disulfide status and for protecting against reactive oxygen species such as hydrogen peroxide. Glutathione-disulfide reductase regenerates reduced glutathione from oxidized glutathione (glutathione disulfide) + NADPH. This model represents one of two closely related subfamilies of glutathione-disulfide reductase. Both are closely related to trypanothione reductase, and separate models are built so each of the three can describe proteins with conserved function. This model describes glutathione-disulfide reductases of plants and some bacteria, including cyanobacteria.

>TIGR01421 gluta_reduc_1 glutathione-disulfide reductase, animal/bacterial

Probab=100.00  E-value=2.7e-39  Score=327.41  Aligned_cols=374  Identities=21%  Similarity=0.282  Sum_probs=248.8

Q ss_pred             CCcEEEEcCcHHHHHHHHHHHHcCCCCCcEEEEcCCCCCCC--CCCCC-cccccCC--------------CCCC---CCC
Q 012165           51 NREFVIVGGGNAAGYAARTFVEHGMADGRLCIVSKEAYAPY--ERPAL-TKGYLFP--------------LDKK---PAR  110 (469)
Q Consensus        51 ~~~vvIIGgG~AGl~aA~~L~~~g~~~~~V~vie~~~~~~~--~~~~l-~~~~~~~--------------~~~~---~~~  110 (469)
                      ++||+||||||||++||..+++.|.   +|+|||++..-+-  ++-.. +|.++..              ....   ..+
T Consensus         2 ~yDvvVIG~GpaG~~aA~~aa~~G~---~V~liE~~~~GG~c~~~gciPsk~l~~~a~~~~~~~~~~~~g~~~~~~~~~~   78 (450)
T TIGR01421         2 HYDYLVIGGGSGGIASARRAAEHGA---KALLVEAKKLGGTCVNVGCVPKKVMWYASDLAERMHDAADYGFYQNLENTFN   78 (450)
T ss_pred             CCCEEEECcCHHHHHHHHHHHHCCC---cEEEecccccccceeccCcCccHHHHHHHHHHHHHhHHhhcCcccCCcCccC
Confidence            5899999999999999999999997   7999998642210  00111 1111100              0000   000


Q ss_pred             CCCCcccc---CCCCCCCCHhHHHHCCcEEEeCCcEEEEeCCCcEEEeCCCeEEEeccEEeccCCCCCcCCCCCCCCcCc
Q 012165          111 LPGFHTCV---GSGGERQTPEWYKEKGIEMIYQDPVTSIDIEKQTLITNSGKLLKYGSLIVATGCTASRFPEKIGGYLPG  187 (469)
Q Consensus       111 ~~~~~~~~---~~~~~~~~~~~~~~~~i~~~~~~~v~~id~~~~~v~~~~g~~~~yd~lVlAtG~~~~~~~~~~g~~~~~  187 (469)
                      ++.+....   -..........+++.+++++.++.+ .  .+.++|.+ +++.+.||+||||||++|+.++.++|.+   
T Consensus        79 ~~~~~~~~~~~~~~~~~~~~~~l~~~gv~~~~g~~~-~--~~~~~v~v-~~~~~~~d~vIiAtGs~p~~p~~i~g~~---  151 (450)
T TIGR01421        79 WPELKEKRDAYVDRLNGIYQKNLEKNKVDVIFGHAR-F--TKDGTVEV-NGRDYTAPHILIATGGKPSFPENIPGAE---  151 (450)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHhCCCEEEEEEEE-E--ccCCEEEE-CCEEEEeCEEEEecCCCCCCCCCCCCCc---
Confidence            00000000   0000001223355679999987443 2  23556766 4667999999999999987432555532   


Q ss_pred             EEEecCHHHHHHHHHhhhcCCeEEEEcCChHHHHHHHHHHhCCCeEe------------------eeHHHHHHcCcEEEc
Q 012165          188 VHYIRDVADADALISSLEKAKKVVVVGGGYIGMEVAAAAVGWKLDTT------------------RYEQLYQQNGVKFVK  249 (469)
Q Consensus       188 v~~~~~~~~~~~~~~~~~~~~~vvVvG~G~~g~e~A~~l~~~g~~v~------------------~~~~~l~~~gV~~~~  249 (469)
                        ...   +.+.+......+++++|||+|++|+|+|..|+.+|.+|+                  .+.+.|++.||++++
T Consensus       152 --~~~---~~~~~~~~~~~~~~vvIIGgG~iG~E~A~~l~~~g~~Vtli~~~~~il~~~d~~~~~~~~~~l~~~gI~i~~  226 (450)
T TIGR01421       152 --LGT---DSDGFFALEELPKRVVIVGAGYIAVELAGVLHGLGSETHLVIRHERVLRSFDSMISETITEEYEKEGINVHK  226 (450)
T ss_pred             --eeE---cHHHhhCccccCCeEEEECCCHHHHHHHHHHHHcCCcEEEEecCCCCCcccCHHHHHHHHHHHHHcCCEEEc
Confidence              111   123333333457999999999999999999999999998                  345678889999999


Q ss_pred             CCeEEEEEeCCCCcEEEEEcCCC-CEEeCCEEEEccCCccCCch--hhhcCCccc-CCCEEeCCCCCCCCCceEEecccc
Q 012165          250 GASIKNLEAGSDGRVAAVKLEDG-STIDADTIVIGIGAKPTVSP--FERVGLNSS-VGGIQVDGQFRTRMPGIFAIGDVA  325 (469)
Q Consensus       250 ~~~v~~i~~~~~~~v~~v~~~~g-~~i~~D~vi~a~G~~p~~~~--~~~~gl~~~-~g~i~Vd~~~~t~~~~Vfa~GD~a  325 (469)
                      ++.+++++.++++.+ .+.+++| +.+++|.||+++|++||+++  ++..+++.+ +|++.||+++||++|+|||+|||+
T Consensus       227 ~~~v~~i~~~~~~~~-~v~~~~g~~~i~~D~vi~a~G~~pn~~~l~l~~~g~~~~~~G~i~vd~~~~T~~p~IyAiGD~~  305 (450)
T TIGR01421       227 LSKPVKVEKTVEGKL-VIHFEDGKSIDDVDELIWAIGRKPNTKGLGLENVGIKLNEKGQIIVDEYQNTNVPGIYALGDVV  305 (450)
T ss_pred             CCEEEEEEEeCCceE-EEEECCCcEEEEcCEEEEeeCCCcCcccCCccccCcEECCCCcEEeCCCCcCCCCCEEEEEecC
Confidence            999999986433323 5677778 57999999999999999985  578888875 577999999999999999999999


Q ss_pred             ccCCccCCcccccchHHHHHHHHHHHHHHHhcCCC---CCCCCCCceeeecccccCCCcceeeEEeecCCCc--------
Q 012165          326 AFPLKMYDRTARVEHVDHARQSAQHCIKALLSAQT---HTYDYLPYFYSRVFEYEGSPRKVWWQFFGDNVGE--------  394 (469)
Q Consensus       326 ~~~~~~~~~~~~~~~~~~A~~~a~~~a~~i~~~~~---~~~~~~p~~~~~~~~~~g~~~~~~~~~~G~~~~~--------  394 (469)
                      ..+.          ....|..+|+.+|++|+++..   ..+..+|+   ..|..+-      +..+|....+        
T Consensus       306 ~~~~----------~~~~A~~~g~~aa~~i~~~~~~~~~~~~~~p~---~~f~~p~------ia~vGlte~~a~~~~g~~  366 (450)
T TIGR01421       306 GKVE----------LTPVAIAAGRKLSERLFNGKTDDKLDYNNVPT---VVFSHPP------IGTIGLTEKEAIEKYGKE  366 (450)
T ss_pred             CCcc----------cHHHHHHHHHHHHHHHhcCCCCCccCcccCCe---EEeCCCc------eEEEeCCHHHHHhhcCCC
Confidence            7543          345699999999999986432   23455664   3344322      3334433210        


Q ss_pred             -EE-EEc-----------cCCCcEEEEEEe--CCEEEEEEeecCChHHhHH-HHHHHhCCCCCCh--hhhcCCCcHHHHH
Q 012165          395 -TI-EIG-----------NFDPKIATFWID--SGKLKGVLVESGSPEEFQL-LPTLARSQPFVDK--AKLQQASSVEEAL  456 (469)
Q Consensus       395 -~~-~~~-----------~~~~~~~~~~~~--~~~l~g~~~~~~~~~~~~~-~~~~~~~~~~~~~--~~~~~~~~~~~~~  456 (469)
                       .. ...           +...-+.|+.++  +++|+|+++++.++.++.. +..+|+.+.+++.  ..++.|||+.|++
T Consensus       367 ~~~~~~~~~~~~~~~~~~~~~~g~~klv~~~~~~~ilG~~~~g~~a~e~i~~~~~ai~~~~t~~~l~~~~~~hPt~~e~~  446 (450)
T TIGR01421       367 NIKVYNSSFTPMYYAMTSEKQKCRMKLVCAGKEEKVVGLHGIGDGVDEMLQGFAVAIKMGATKADFDNTVAIHPTSSEEL  446 (450)
T ss_pred             CEEEEEEEcChhHHHHhcCCCceEEEEEEECCCCEEEEEEEECCCHHHHHHHHHHHHHCCCCHHHHhhcccCCCChHHHH
Confidence             10 000           011225666664  6999999998877766554 4556788888773  2346899999998


Q ss_pred             HHH
Q 012165          457 EIA  459 (469)
Q Consensus       457 ~~~  459 (469)
                      ..+
T Consensus       447 ~~~  449 (450)
T TIGR01421       447 VTM  449 (450)
T ss_pred             hhc
Confidence            765

The tripeptide glutathione is an important reductant, e.g., for maintaining the cellular thiol/disulfide status and for protecting against reactive oxygen species such as hydrogen peroxide. Glutathione-disulfide reductase regenerates reduced glutathione from oxidized glutathione (glutathione disulfide) + NADPH. This model represents one of two closely related subfamilies of glutathione-disulfide reductase. Both are closely related to trypanothione reductase, and separate models are built so each of the three can describe proteins with conserved function. This model describes glutathione-disulfide reductases of animals, yeast, and a number of animal-resident bacteria.

>PRK06467 dihydrolipoamide dehydrogenase; Reviewed

Probab=100.00  E-value=2.3e-39  Score=329.71  Aligned_cols=385  Identities=16%  Similarity=0.239  Sum_probs=252.7

Q ss_pred             CCCCcEEEEcCcHHHHHHHHHHHHcCCCCCcEEEEcCCCCCCC---CCCCC-cccccC---------C-------CCCCC
Q 012165           49 NENREFVIVGGGNAAGYAARTFVEHGMADGRLCIVSKEAYAPY---ERPAL-TKGYLF---------P-------LDKKP  108 (469)
Q Consensus        49 ~~~~~vvIIGgG~AGl~aA~~L~~~g~~~~~V~vie~~~~~~~---~~~~l-~~~~~~---------~-------~~~~~  108 (469)
                      +.++||+|||||+||++||..|++.|.   +|+|||+.+.++.   ++..+ +|.++.         .       .....
T Consensus         2 ~~~~DvvVIG~GpaG~~aA~~aa~~G~---~V~lie~~~~~GG~c~n~gciP~K~l~~~a~~~~~~~~~~~~g~~~~~~~   78 (471)
T PRK06467          2 EIKTQVVVLGAGPAGYSAAFRAADLGL---ETVCVERYSTLGGVCLNVGCIPSKALLHVAKVIEEAKALAEHGIVFGEPK   78 (471)
T ss_pred             CccceEEEECCCHHHHHHHHHHHHCCC---cEEEEecCCcccccccCCCcccHHHHHHHHHHHHHHhhhhhcCcccCCCC
Confidence            346999999999999999999999987   7999998654331   11111 111110         0       00000


Q ss_pred             CCCCCCcccc---CCCCCCCCHhHHHHCCcEEEeCCcEEEEeCCCcEEEeCCC--eEEEeccEEeccCCCCCcCCCCCCC
Q 012165          109 ARLPGFHTCV---GSGGERQTPEWYKEKGIEMIYQDPVTSIDIEKQTLITNSG--KLLKYGSLIVATGCTASRFPEKIGG  183 (469)
Q Consensus       109 ~~~~~~~~~~---~~~~~~~~~~~~~~~~i~~~~~~~v~~id~~~~~v~~~~g--~~~~yd~lVlAtG~~~~~~~~~~g~  183 (469)
                      .++..+....   -..........+++.+++++.+ ++..++.....|...+|  .++.||+||||||++|+.+|.+++ 
T Consensus        79 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~gV~~~~g-~a~~~~~~~v~v~~~~g~~~~~~~d~lViATGs~p~~~p~~~~-  156 (471)
T PRK06467         79 IDIDKMRARKEKVVKQLTGGLAGMAKGRKVTVVNG-LGKFTGGNTLEVTGEDGKTTVIEFDNAIIAAGSRPIQLPFIPH-  156 (471)
T ss_pred             cCHHHHHHHHHHHHHHHHHHHHHHHHhCCCEEEEE-EEEEccCCEEEEecCCCceEEEEcCEEEEeCCCCCCCCCCCCC-
Confidence            0110000000   0000001123356679999986 55556654444555566  469999999999999975555443 


Q ss_pred             CcCcEEEecCHHHHHHHHHhhhcCCeEEEEcCChHHHHHHHHHHhCCCeEe------------------eeHHHHHHcCc
Q 012165          184 YLPGVHYIRDVADADALISSLEKAKKVVVVGGGYIGMEVAAAAVGWKLDTT------------------RYEQLYQQNGV  245 (469)
Q Consensus       184 ~~~~v~~~~~~~~~~~~~~~~~~~~~vvVvG~G~~g~e~A~~l~~~g~~v~------------------~~~~~l~~~gV  245 (469)
                      +.+++.+.   .+.   ......+++++|||+|++|+|+|..|.++|.+|+                  .+.+.+++. |
T Consensus       157 ~~~~v~~~---~~~---~~~~~~~~~vvIiGgG~iG~E~A~~l~~~G~~Vtlv~~~~~il~~~d~~~~~~~~~~l~~~-v  229 (471)
T PRK06467        157 DDPRIWDS---TDA---LELKEVPKRLLVMGGGIIGLEMGTVYHRLGSEVDVVEMFDQVIPAADKDIVKVFTKRIKKQ-F  229 (471)
T ss_pred             CCCcEECh---HHh---hccccCCCeEEEECCCHHHHHHHHHHHHcCCCEEEEecCCCCCCcCCHHHHHHHHHHHhhc-e
Confidence            23333322   222   2223457999999999999999999999999998                  345667777 9


Q ss_pred             EEEcCCeEEEEEeCCCCcEEEEEcCC--C--CEEeCCEEEEccCCccCCch--hhhcCCccc-CCCEEeCCCCCCCCCce
Q 012165          246 KFVKGASIKNLEAGSDGRVAAVKLED--G--STIDADTIVIGIGAKPTVSP--FERVGLNSS-VGGIQVDGQFRTRMPGI  318 (469)
Q Consensus       246 ~~~~~~~v~~i~~~~~~~v~~v~~~~--g--~~i~~D~vi~a~G~~p~~~~--~~~~gl~~~-~g~i~Vd~~~~t~~~~V  318 (469)
                      ++++++.+++++..+++ + .+.+.+  +  +++++|.||+++|++||+++  ++..+++.+ +|+|.||+++||++|+|
T Consensus       230 ~i~~~~~v~~i~~~~~~-~-~v~~~~~~~~~~~i~~D~vi~a~G~~pn~~~l~~~~~gl~~~~~G~I~Vd~~~~t~~p~V  307 (471)
T PRK06467        230 NIMLETKVTAVEAKEDG-I-YVTMEGKKAPAEPQRYDAVLVAVGRVPNGKLLDAEKAGVEVDERGFIRVDKQCRTNVPHI  307 (471)
T ss_pred             EEEcCCEEEEEEEcCCE-E-EEEEEeCCCcceEEEeCEEEEeecccccCCccChhhcCceECCCCcEeeCCCcccCCCCE
Confidence            99999999999854333 3 355443  2  46999999999999999985  467788875 57799999999999999


Q ss_pred             EEeccccccCCccCCcccccchHHHHHHHHHHHHHHHhcCCC-CCCCCCCceeeecccccCCCcceeeEEeecCCC----
Q 012165          319 FAIGDVAAFPLKMYDRTARVEHVDHARQSAQHCIKALLSAQT-HTYDYLPYFYSRVFEYEGSPRKVWWQFFGDNVG----  393 (469)
Q Consensus       319 fa~GD~a~~~~~~~~~~~~~~~~~~A~~~a~~~a~~i~~~~~-~~~~~~p~~~~~~~~~~g~~~~~~~~~~G~~~~----  393 (469)
                      ||+|||+..+.          ....|..+|+.+|.+|++... ..+...|+.  . |..+.      +..+|.+..    
T Consensus       308 yAiGDv~~~~~----------la~~A~~eG~~aa~~i~g~~~~~~~~~~p~~--~-~~~p~------ia~vGlte~ea~~  368 (471)
T PRK06467        308 FAIGDIVGQPM----------LAHKGVHEGHVAAEVIAGKKHYFDPKVIPSI--A-YTEPE------VAWVGLTEKEAKE  368 (471)
T ss_pred             EEehhhcCCcc----------cHHHHHHHHHHHHHHHcCCCCCCCCCCCCeE--E-ECCCc------eeEEECCHHHHHh
Confidence            99999986442          345699999999999986432 223445642  2 33221      444554321    


Q ss_pred             ---cEE--EE--c--------cCCCcEEEEEEe--CCEEEEEEeecCChHHhHH-HHHHHhCCCCCCh--hhhcCCCcHH
Q 012165          394 ---ETI--EI--G--------NFDPKIATFWID--SGKLKGVLVESGSPEEFQL-LPTLARSQPFVDK--AKLQQASSVE  453 (469)
Q Consensus       394 ---~~~--~~--~--------~~~~~~~~~~~~--~~~l~g~~~~~~~~~~~~~-~~~~~~~~~~~~~--~~~~~~~~~~  453 (469)
                         +..  ..  .        +....|.|++++  +++|+|+++++.++.++.. +..+|+.+.+++.  ..+..||++.
T Consensus       369 ~g~~~~~~~~~~~~~~~~~~~~~~~g~~kli~d~~t~~ilG~~~vg~~a~e~i~~~a~ai~~~~t~~~l~~~~~~hPt~~  448 (471)
T PRK06467        369 EGIEYETATFPWAASGRAIASDCADGMTKLIFDKETHRVLGGAIVGTNAGELLGEIGLAIEMGCDAEDIALTIHAHPTLH  448 (471)
T ss_pred             cCCCeEEEEEecCcchhhhhCCCCceEEEEEEECCCCeEEEEEEECCCHHHHHHHHHHHHHCCCCHHHHhhcccCCCChH
Confidence               110  00  0        011236777774  5899999998888766554 4556788877762  2246899999


Q ss_pred             HHHHHHHhcCCcc
Q 012165          454 EALEIARAALPVE  466 (469)
Q Consensus       454 ~~~~~~~~~~~~~  466 (469)
                      |+++.|++++..+
T Consensus       449 e~~~~a~~~~~~~  461 (471)
T PRK06467        449 ESVGLAAEAFEGS  461 (471)
T ss_pred             HHHHHHHHhhcCC
Confidence            9999999876554

>PRK06416 dihydrolipoamide dehydrogenase; Reviewed

Probab=100.00  E-value=5.7e-39  Score=327.62  Aligned_cols=383  Identities=23%  Similarity=0.313  Sum_probs=255.1

Q ss_pred             CCCcEEEEcCcHHHHHHHHHHHHcCCCCCcEEEEcCCCCCCC--CCCC-CcccccCCC------------C----CCCCC
Q 012165           50 ENREFVIVGGGNAAGYAARTFVEHGMADGRLCIVSKEAYAPY--ERPA-LTKGYLFPL------------D----KKPAR  110 (469)
Q Consensus        50 ~~~~vvIIGgG~AGl~aA~~L~~~g~~~~~V~vie~~~~~~~--~~~~-l~~~~~~~~------------~----~~~~~  110 (469)
                      ..+|++||||||||++||..|+++|.   +|+|+|++..-+.  +... .+|.++...            .    ....+
T Consensus         3 ~~yDvvVIGaGpaG~~aA~~aa~~G~---~V~liE~~~~GG~c~~~gciP~k~l~~~~~~~~~~~~~~~~g~~~~~~~~~   79 (462)
T PRK06416          3 FEYDVIVIGAGPGGYVAAIRAAQLGL---KVAIVEKEKLGGTCLNRGCIPSKALLHAAERADEARHSEDFGIKAENVGID   79 (462)
T ss_pred             ccccEEEECCCHHHHHHHHHHHHCCC---cEEEEeccccccceeecccCCcHHHHHhhhHHHHHHHHHhcCcccCCCccC
Confidence            45899999999999999999999987   7999998762110  1111 122111000            0    00000


Q ss_pred             CCCCcccc---CCCCCCCCHhHHHHCCcEEEeCCcEEEEeCCCcEEEeCC-CeEEEeccEEeccCCCCCcCCCCCCCCcC
Q 012165          111 LPGFHTCV---GSGGERQTPEWYKEKGIEMIYQDPVTSIDIEKQTLITNS-GKLLKYGSLIVATGCTASRFPEKIGGYLP  186 (469)
Q Consensus       111 ~~~~~~~~---~~~~~~~~~~~~~~~~i~~~~~~~v~~id~~~~~v~~~~-g~~~~yd~lVlAtG~~~~~~~~~~g~~~~  186 (469)
                      +..+....   ...........+++.+++++.+ ++..+++...+|...+ ++++.||+||||||++|..+|   |...+
T Consensus        80 ~~~~~~~~~~~~~~~~~~~~~~~~~~gv~~~~g-~~~~~~~~~~~v~~~~~~~~~~~d~lViAtGs~p~~~p---g~~~~  155 (462)
T PRK06416         80 FKKVQEWKNGVVNRLTGGVEGLLKKNKVDIIRG-EAKLVDPNTVRVMTEDGEQTYTAKNIILATGSRPRELP---GIEID  155 (462)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHhCCCEEEEE-EEEEccCCEEEEecCCCcEEEEeCEEEEeCCCCCCCCC---CCCCC
Confidence            00000000   0000001223456789999986 6777776655665433 467999999999999986433   43333


Q ss_pred             cEEEecCHHHHHHHHHhhhcCCeEEEEcCChHHHHHHHHHHhCCCeEe------------------eeHHHHHHcCcEEE
Q 012165          187 GVHYIRDVADADALISSLEKAKKVVVVGGGYIGMEVAAAAVGWKLDTT------------------RYEQLYQQNGVKFV  248 (469)
Q Consensus       187 ~v~~~~~~~~~~~~~~~~~~~~~vvVvG~G~~g~e~A~~l~~~g~~v~------------------~~~~~l~~~gV~~~  248 (469)
                      +.. +.+..+...   ....+++++|||+|++|+|+|..|.++|.+|+                  .+.+.+++.||+++
T Consensus       156 ~~~-v~~~~~~~~---~~~~~~~vvVvGgG~~g~E~A~~l~~~g~~Vtli~~~~~~l~~~~~~~~~~l~~~l~~~gV~i~  231 (462)
T PRK06416        156 GRV-IWTSDEALN---LDEVPKSLVVIGGGYIGVEFASAYASLGAEVTIVEALPRILPGEDKEISKLAERALKKRGIKIK  231 (462)
T ss_pred             CCe-EEcchHhhC---ccccCCeEEEECCCHHHHHHHHHHHHcCCeEEEEEcCCCcCCcCCHHHHHHHHHHHHHcCCEEE
Confidence            421 222223322   22357899999999999999999999999987                  34567888999999


Q ss_pred             cCCeEEEEEeCCCCcEEEEEcCCC---CEEeCCEEEEccCCccCCchh--hhcCCcccCCCEEeCCCCCCCCCceEEecc
Q 012165          249 KGASIKNLEAGSDGRVAAVKLEDG---STIDADTIVIGIGAKPTVSPF--ERVGLNSSVGGIQVDGQFRTRMPGIFAIGD  323 (469)
Q Consensus       249 ~~~~v~~i~~~~~~~v~~v~~~~g---~~i~~D~vi~a~G~~p~~~~~--~~~gl~~~~g~i~Vd~~~~t~~~~Vfa~GD  323 (469)
                      +++++++++.++ +.+ .+.+.+|   +++++|.||+++|.+|+++++  ++.++..++|++.||+++||+.|+|||+||
T Consensus       232 ~~~~V~~i~~~~-~~v-~v~~~~gg~~~~i~~D~vi~a~G~~p~~~~l~l~~~gl~~~~g~i~vd~~~~t~~~~VyAiGD  309 (462)
T PRK06416        232 TGAKAKKVEQTD-DGV-TVTLEDGGKEETLEADYVLVAVGRRPNTENLGLEELGVKTDRGFIEVDEQLRTNVPNIYAIGD  309 (462)
T ss_pred             eCCEEEEEEEeC-CEE-EEEEEeCCeeEEEEeCEEEEeeCCccCCCCCCchhcCCeecCCEEeECCCCccCCCCEEEeee
Confidence            999999998643 333 4566665   679999999999999999874  678887777789999999999999999999


Q ss_pred             ccccCCccCCcccccchHHHHHHHHHHHHHHHhcCCCCCCC--CCCceeeecccccCCCcceeeEEeecCCCc-------
Q 012165          324 VAAFPLKMYDRTARVEHVDHARQSAQHCIKALLSAQTHTYD--YLPYFYSRVFEYEGSPRKVWWQFFGDNVGE-------  394 (469)
Q Consensus       324 ~a~~~~~~~~~~~~~~~~~~A~~~a~~~a~~i~~~~~~~~~--~~p~~~~~~~~~~g~~~~~~~~~~G~~~~~-------  394 (469)
                      |+..+.          .+..|..||+.+|.||++. ..+++  .+|.  ...++.+       +..+|.+..+       
T Consensus       310 ~~~~~~----------~~~~A~~~g~~aa~ni~~~-~~~~~~~~~~~--~~~~~~~-------~a~vG~te~~a~~~g~~  369 (462)
T PRK06416        310 IVGGPM----------LAHKASAEGIIAAEAIAGN-PHPIDYRGIPA--VTYTHPE-------VASVGLTEAKAKEEGFD  369 (462)
T ss_pred             cCCCcc----------hHHHHHHHHHHHHHHHcCC-CCCCCCCCCCe--EEECCCc-------eEEEeCCHHHHHhcCCC
Confidence            997432          4556999999999999963 33333  3443  2333322       4455654221       


Q ss_pred             EEE-Ecc-----------CCCcEEEEEE--eCCEEEEEEeecCChHHhHH-HHHHHhCCCCCCh-hh-hcCCCcHHHHHH
Q 012165          395 TIE-IGN-----------FDPKIATFWI--DSGKLKGVLVESGSPEEFQL-LPTLARSQPFVDK-AK-LQQASSVEEALE  457 (469)
Q Consensus       395 ~~~-~~~-----------~~~~~~~~~~--~~~~l~g~~~~~~~~~~~~~-~~~~~~~~~~~~~-~~-~~~~~~~~~~~~  457 (469)
                      ... .-.           ....+.|+.+  ++++|+|+++++.++.++.. +..+|+.+.+++. .. ...||++.|+++
T Consensus       370 ~~~~~~~~~~~~~~~~~~~~~g~~kli~~~~~~~ilG~~~~g~~a~e~i~~~~~ai~~~~t~~~l~~~~~~hPt~~e~~~  449 (462)
T PRK06416        370 VKVVKFPFAGNGKALALGETDGFVKLIFDKKDGEVLGAHMVGARASELIQEAQLAINWEATPEDLALTIHPHPTLSEALG  449 (462)
T ss_pred             eEEEEEecCcChHhHhcCCCceEEEEEEECCCCEEEEEEEECCCHHHHHHHHHHHHHCCCCHHHHhhCccCCCCHHHHHH
Confidence            110 000           1123666666  36999999988877766554 4556788887762 22 467999999999


Q ss_pred             HHHhcCCc
Q 012165          458 IARAALPV  465 (469)
Q Consensus       458 ~~~~~~~~  465 (469)
                      .|++.+..
T Consensus       450 ~~~~~~~~  457 (462)
T PRK06416        450 EAALAAAG  457 (462)
T ss_pred             HHHHHhcc
Confidence            99876543

>PRK06115 dihydrolipoamide dehydrogenase; Reviewed

Probab=100.00  E-value=3.5e-39  Score=328.23  Aligned_cols=386  Identities=21%  Similarity=0.287  Sum_probs=250.5

Q ss_pred             CCCcEEEEcCcHHHHHHHHHHHHcCCCCCcEEEEcCCCCCCCC---CCCC-cccccCCCC-----C--CCCCCCCCcccc
Q 012165           50 ENREFVIVGGGNAAGYAARTFVEHGMADGRLCIVSKEAYAPYE---RPAL-TKGYLFPLD-----K--KPARLPGFHTCV  118 (469)
Q Consensus        50 ~~~~vvIIGgG~AGl~aA~~L~~~g~~~~~V~vie~~~~~~~~---~~~l-~~~~~~~~~-----~--~~~~~~~~~~~~  118 (469)
                      +++||+||||||||++||..++++|.   +|+|||+...++..   +-.. +|.++....     .  ...++ +.....
T Consensus         2 ~~~DvvVIG~GpaG~~AA~~aa~~G~---~V~liE~~~~~GG~c~~~gciPsK~l~~~~~~~~~~~~~~~~~~-gi~~~~   77 (466)
T PRK06115          2 ASYDVVIIGGGPGGYNAAIRAGQLGL---KVACVEGRSTLGGTCLNVGCMPSKALLHASELYEAASGGEFAHL-GIEVKP   77 (466)
T ss_pred             CcccEEEECCCHHHHHHHHHHHhCCC---eEEEEecCCceeeeeccCcccccHHHHHHhHHHHHHhhhhhhhc-CccccC
Confidence            35899999999999999999999987   79999974333211   1111 111110000     0  00000 000000


Q ss_pred             CCCCC--------------CCCHhHHHHCCcEEEeCCcEEEEeCCC-cEEEeCCCe--EEEeccEEeccCCCCCcCCCCC
Q 012165          119 GSGGE--------------RQTPEWYKEKGIEMIYQDPVTSIDIEK-QTLITNSGK--LLKYGSLIVATGCTASRFPEKI  181 (469)
Q Consensus       119 ~~~~~--------------~~~~~~~~~~~i~~~~~~~v~~id~~~-~~v~~~~g~--~~~yd~lVlAtG~~~~~~~~~~  181 (469)
                      ..++.              .....+++..+++++.+ +. .++... ..|.+.+|+  +++||+||||||++|..   +|
T Consensus        78 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~g-~a-~~~~~~~v~v~~~~g~~~~~~~d~lVIATGs~p~~---ip  152 (466)
T PRK06115         78 TLNLAQMMKQKDESVEALTKGVEFLFRKNKVDWIKG-WG-RLDGVGKVVVKAEDGSETQLEAKDIVIATGSEPTP---LP  152 (466)
T ss_pred             ccCHHHHHHHHHHHHHHHHHHHHHHHHhCCCEEEEE-EE-EEccCCEEEEEcCCCceEEEEeCEEEEeCCCCCCC---CC
Confidence            00000              01122345568998886 33 333333 344455663  69999999999998853   34


Q ss_pred             CCCcCcEEEecCHHHHHHHHHhhhcCCeEEEEcCChHHHHHHHHHHhCCCeEe------------------eeHHHHHHc
Q 012165          182 GGYLPGVHYIRDVADADALISSLEKAKKVVVVGGGYIGMEVAAAAVGWKLDTT------------------RYEQLYQQN  243 (469)
Q Consensus       182 g~~~~~v~~~~~~~~~~~~~~~~~~~~~vvVvG~G~~g~e~A~~l~~~g~~v~------------------~~~~~l~~~  243 (469)
                      |...++...+.    .+.+......+++++|||+|++|+|+|..+.++|.+|+                  .+.+.|++.
T Consensus       153 g~~~~~~~~~~----~~~~~~~~~~~~~vvIIGgG~ig~E~A~~l~~~G~~Vtlie~~~~il~~~d~~~~~~l~~~l~~~  228 (466)
T PRK06115        153 GVTIDNQRIID----STGALSLPEVPKHLVVIGAGVIGLELGSVWRRLGAQVTVVEYLDRICPGTDTETAKTLQKALTKQ  228 (466)
T ss_pred             CCCCCCCeEEC----HHHHhCCccCCCeEEEECCCHHHHHHHHHHHHcCCeEEEEeCCCCCCCCCCHHHHHHHHHHHHhc
Confidence            44344543332    23333323467999999999999999999999999987                  345678889


Q ss_pred             CcEEEcCCeEEEEEeCCCCcEEEEEc-C--CCCEEeCCEEEEccCCccCCch--hhhcCCcccCCCEEeCCCCCCCCCce
Q 012165          244 GVKFVKGASIKNLEAGSDGRVAAVKL-E--DGSTIDADTIVIGIGAKPTVSP--FERVGLNSSVGGIQVDGQFRTRMPGI  318 (469)
Q Consensus       244 gV~~~~~~~v~~i~~~~~~~v~~v~~-~--~g~~i~~D~vi~a~G~~p~~~~--~~~~gl~~~~g~i~Vd~~~~t~~~~V  318 (469)
                      ||++++++.+++++.++++....+.. .  +++++++|.|++++|++||++.  ++..++..+.+++.||+++||++|+|
T Consensus       229 gV~i~~~~~V~~i~~~~~~v~v~~~~~~~g~~~~i~~D~vi~a~G~~pn~~~l~~~~~g~~~~~~G~~vd~~~~Ts~~~I  308 (466)
T PRK06115        229 GMKFKLGSKVTGATAGADGVSLTLEPAAGGAAETLQADYVLVAIGRRPYTQGLGLETVGLETDKRGMLANDHHRTSVPGV  308 (466)
T ss_pred             CCEEEECcEEEEEEEcCCeEEEEEEEcCCCceeEEEeCEEEEccCCccccccCCcccccceeCCCCEEECCCeecCCCCE
Confidence            99999999999998643333222222 1  2357999999999999999985  56677777655688999999999999


Q ss_pred             EEeccccccCCccCCcccccchHHHHHHHHHHHHHHHhcCCC-CCCCCCCceeeecccccCCCcceeeEEeecCCC----
Q 012165          319 FAIGDVAAFPLKMYDRTARVEHVDHARQSAQHCIKALLSAQT-HTYDYLPYFYSRVFEYEGSPRKVWWQFFGDNVG----  393 (469)
Q Consensus       319 fa~GD~a~~~~~~~~~~~~~~~~~~A~~~a~~~a~~i~~~~~-~~~~~~p~~~~~~~~~~g~~~~~~~~~~G~~~~----  393 (469)
                      ||+|||+..+.          ....|..||+.+|+||++... ..+..+|+.   +|..+.      +..+|.+..    
T Consensus       309 yA~GD~~~~~~----------la~~A~~~g~~aa~~i~~~~~~~~~~~~p~~---~~t~p~------ia~vGlte~~a~~  369 (466)
T PRK06115        309 WVIGDVTSGPM----------LAHKAEDEAVACIERIAGKAGEVNYGLIPGV---IYTRPE------VATVGKTEEQLKA  369 (466)
T ss_pred             EEeeecCCCcc----------cHHHHHHHHHHHHHHHcCCCCCCCCCCCCeE---EECCcc------cEEeeCCHHHHHH
Confidence            99999997542          334599999999999986432 234556652   333221      344554321    


Q ss_pred             ---cEEE-E---c--------cCCCcEEEEEEe--CCEEEEEEeecCChHHhHH-HHHHHhCCCCCCh--hhhcCCCcHH
Q 012165          394 ---ETIE-I---G--------NFDPKIATFWID--SGKLKGVLVESGSPEEFQL-LPTLARSQPFVDK--AKLQQASSVE  453 (469)
Q Consensus       394 ---~~~~-~---~--------~~~~~~~~~~~~--~~~l~g~~~~~~~~~~~~~-~~~~~~~~~~~~~--~~~~~~~~~~  453 (469)
                         +... .   .        .....|.|++++  +++|+|+++++.++.++.. +..+|+.+.+++.  ...+.|||+.
T Consensus       370 ~g~~~~~~~~~~~~~~~~~~~~~~~g~~klv~~~~~~~ilG~~~~g~~a~e~i~~~~~ai~~~~t~~dl~~~~~~hPt~~  449 (466)
T PRK06115        370 EGRAYKVGKFPFTANSRAKINHETEGFAKILADARTDEVLGVHMVGPSVSEMIGEFCVAMEFSASAEDIALTCHPHPTRS  449 (466)
T ss_pred             CCCCEEEEEEecccChhhHhcCCCceEEEEEEECCCCEEEEEEEECCCHHHHHHHHHHHHHcCCCHHHHhhCccCCCChH
Confidence               1110 0   0        001236777764  5899999987777766544 4556788887762  2346799999


Q ss_pred             HHHHHHHhcCCccc
Q 012165          454 EALEIARAALPVEA  467 (469)
Q Consensus       454 ~~~~~~~~~~~~~~  467 (469)
                      |.++.|++.+..++
T Consensus       450 e~~~~a~~~~~~~~  463 (466)
T PRK06115        450 EALRQAAMNVEGWA  463 (466)
T ss_pred             HHHHHHHHHHhcch
Confidence            99999998776543

>COG1252 Ndh NADH dehydrogenase, FAD-containing subunit [Energy production and conversion]

Probab=100.00  E-value=2.6e-39  Score=312.49  Aligned_cols=279  Identities=23%  Similarity=0.325  Sum_probs=219.3

Q ss_pred             CCCcEEEEcCcHHHHHHHHHHHHcCCCCCcEEEEcCCCCCCCCCCCCcccccCCCCCCCCCCCCCccccCCCCCCCCHhH
Q 012165           50 ENREFVIVGGGNAAGYAARTFVEHGMADGRLCIVSKEAYAPYERPALTKGYLFPLDKKPARLPGFHTCVGSGGERQTPEW  129 (469)
Q Consensus        50 ~~~~vvIIGgG~AGl~aA~~L~~~g~~~~~V~vie~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  129 (469)
                      ++++|||||||++|+.+|..|.+.. ++.+||+||+.+++.|. |.|........+.....             ....+.
T Consensus         2 ~~~~iVIlGgGfgGl~~a~~l~~~~-~~~~itLVd~~~~hl~~-plL~eva~g~l~~~~i~-------------~p~~~~   66 (405)
T COG1252           2 MKKRIVILGGGFGGLSAAKRLARKL-PDVEITLVDRRDYHLFT-PLLYEVATGTLSESEIA-------------IPLRAL   66 (405)
T ss_pred             CCceEEEECCcHHHHHHHHHhhhcC-CCCcEEEEeCCCccccc-hhhhhhhcCCCChhhee-------------ccHHHH
Confidence            4689999999999999999999985 35689999999999876 55544221111111111             234555


Q ss_pred             HHHCC-cEEEeCCcEEEEeCCCcEEEeCCCeEEEeccEEeccCCCCCcCCCCCCCCcCcEEEecCHHHHHHHHHhhh---
Q 012165          130 YKEKG-IEMIYQDPVTSIDIEKQTLITNSGKLLKYGSLIVATGCTASRFPEKIGGYLPGVHYIRDVADADALISSLE---  205 (469)
Q Consensus       130 ~~~~~-i~~~~~~~v~~id~~~~~v~~~~g~~~~yd~lVlAtG~~~~~~~~~~g~~~~~v~~~~~~~~~~~~~~~~~---  205 (469)
                      +++.+ ++++.+ +|++||++.++|++.++..+.||+||+|+|+.+.. +.++|. .+..+.+.+++|+.+++..+.   
T Consensus        67 ~~~~~~v~~~~~-~V~~ID~~~k~V~~~~~~~i~YD~LVvalGs~~~~-fgi~G~-~E~a~~lks~edA~~ir~~l~~~f  143 (405)
T COG1252          67 LRKSGNVQFVQG-EVTDIDRDAKKVTLADLGEISYDYLVVALGSETNY-FGIPGA-AEYAFGLKTLEDALRLRRHLLEAF  143 (405)
T ss_pred             hcccCceEEEEE-EEEEEcccCCEEEeCCCccccccEEEEecCCcCCc-CCCCCH-HHhCCCCCCHHHHHHHHHHHHHHH
Confidence            66444 999985 99999999999999998889999999999999874 455553 233467888888877766543   


Q ss_pred             -----cC-----CeEEEEcCChHHHHHHHHHHhCCC-------------eEe------------------eeHHHHHHcC
Q 012165          206 -----KA-----KKVVVVGGGYIGMEVAAAAVGWKL-------------DTT------------------RYEQLYQQNG  244 (469)
Q Consensus       206 -----~~-----~~vvVvG~G~~g~e~A~~l~~~g~-------------~v~------------------~~~~~l~~~g  244 (469)
                           ..     .+++|+|||++|+|+|.+|+++-.             ++.                  ..++.|++.|
T Consensus       144 e~a~~~~~~~~~lti~IvGgG~TGVElAgeL~~~~~~l~~~~~~~~~~~~V~LVea~p~ILp~~~~~l~~~a~~~L~~~G  223 (405)
T COG1252         144 EKASQEEDDRALLTIVIVGGGPTGVELAGELAERLHRLLKKFRVDPSELRVILVEAGPRILPMFPPKLSKYAERALEKLG  223 (405)
T ss_pred             HHhhccccccceeEEEEECCChhHHHHHHHHHHHHHHHhhhhcCCccccEEEEEccCchhccCCCHHHHHHHHHHHHHCC
Confidence                 12     269999999999999998875422             333                  6678999999


Q ss_pred             cEEEcCCeEEEEEeCCCCcEEEEEcCCCCE-EeCCEEEEccCCccCCchhhh-cCCccc-CCCEEeCCCCCC-CCCceEE
Q 012165          245 VKFVKGASIKNLEAGSDGRVAAVKLEDGST-IDADTIVIGIGAKPTVSPFER-VGLNSS-VGGIQVDGQFRT-RMPGIFA  320 (469)
Q Consensus       245 V~~~~~~~v~~i~~~~~~~v~~v~~~~g~~-i~~D~vi~a~G~~p~~~~~~~-~gl~~~-~g~i~Vd~~~~t-~~~~Vfa  320 (469)
                      |++++++.|++++++      +|++++|.+ |++|.+||++|.+++ +++++ .+++.+ .|++.||+++|+ ++|||||
T Consensus       224 V~v~l~~~Vt~v~~~------~v~~~~g~~~I~~~tvvWaaGv~a~-~~~~~l~~~e~dr~Grl~V~~~L~~~~~~~IFa  296 (405)
T COG1252         224 VEVLLGTPVTEVTPD------GVTLKDGEEEIPADTVVWAAGVRAS-PLLKDLSGLETDRRGRLVVNPTLQVPGHPDIFA  296 (405)
T ss_pred             CEEEcCCceEEECCC------cEEEccCCeeEecCEEEEcCCCcCC-hhhhhcChhhhccCCCEEeCCCcccCCCCCeEE
Confidence            999999999999854      588888884 999999999999998 67787 477767 589999999998 8999999


Q ss_pred             eccccccCCccCCcccccchHHHHHHHHHHHHHHHhc
Q 012165          321 IGDVAAFPLKMYDRTARVEHVDHARQSAQHCIKALLS  357 (469)
Q Consensus       321 ~GD~a~~~~~~~~~~~~~~~~~~A~~~a~~~a~~i~~  357 (469)
                      +|||+..+..    .......+.|.+||..+|+||..
T Consensus       297 ~GD~A~~~~~----~p~P~tAQ~A~Qqg~~~a~ni~~  329 (405)
T COG1252         297 AGDCAAVIDP----RPVPPTAQAAHQQGEYAAKNIKA  329 (405)
T ss_pred             EeccccCCCC----CCCCChhHHHHHHHHHHHHHHHH
Confidence            9999988764    11133667899999999999975

>PRK08010 pyridine nucleotide-disulfide oxidoreductase; Provisional

Probab=100.00  E-value=4.5e-38  Score=318.96  Aligned_cols=378  Identities=18%  Similarity=0.224  Sum_probs=252.6

Q ss_pred             CCCcEEEEcCcHHHHHHHHHHHHcCCCCCcEEEEcCCCCC-CCC---CCCCc-ccccCCCCCCCCCCCCCccc---cCCC
Q 012165           50 ENREFVIVGGGNAAGYAARTFVEHGMADGRLCIVSKEAYA-PYE---RPALT-KGYLFPLDKKPARLPGFHTC---VGSG  121 (469)
Q Consensus        50 ~~~~vvIIGgG~AGl~aA~~L~~~g~~~~~V~vie~~~~~-~~~---~~~l~-~~~~~~~~~~~~~~~~~~~~---~~~~  121 (469)
                      +.+||+|||||+||++||..|+++|.   +|+|||+.+.. +..   +...+ +.++.. .....++......   .-..
T Consensus         2 ~~yDvvVIGgGpaGl~aA~~la~~g~---~V~lie~~~~~~GG~~~~~gcip~k~l~~~-~~~~~~~~~~~~~~~~~~~~   77 (441)
T PRK08010          2 NKYQAVIIGFGKAGKTLAVTLAKAGW---RVALIEQSNAMYGGTCINIGCIPTKTLVHD-AQQHTDFVRAIQRKNEVVNF   77 (441)
T ss_pred             CcCCEEEECCCHhHHHHHHHHHHCCC---eEEEEcCCCCccceeEeeccccchHHHHHH-hccCCCHHHHHHHHHHHHHH
Confidence            46899999999999999999999987   79999987532 111   11111 111110 0000011000000   0000


Q ss_pred             CCCCC-HhHHHHCCcEEEeCCcEEEEeCCCcEEEeCCCe-EEEeccEEeccCCCCCcCCCCCCCC-cCcEEEecCHHHHH
Q 012165          122 GERQT-PEWYKEKGIEMIYQDPVTSIDIEKQTLITNSGK-LLKYGSLIVATGCTASRFPEKIGGY-LPGVHYIRDVADAD  198 (469)
Q Consensus       122 ~~~~~-~~~~~~~~i~~~~~~~v~~id~~~~~v~~~~g~-~~~yd~lVlAtG~~~~~~~~~~g~~-~~~v~~~~~~~~~~  198 (469)
                      ..... .+..+..+++++.+ ++..++.....|.+.++. ++.||+||||||++|. .|+++|.+ .+++++.      .
T Consensus        78 ~~~~~~~~~~~~~gv~~~~g-~~~~i~~~~~~v~~~~g~~~~~~d~lviATGs~p~-~p~i~G~~~~~~v~~~------~  149 (441)
T PRK08010         78 LRNKNFHNLADMPNIDVIDG-QAEFINNHSLRVHRPEGNLEIHGEKIFINTGAQTV-VPPIPGITTTPGVYDS------T  149 (441)
T ss_pred             HHHhHHHHHhhcCCcEEEEE-EEEEecCCEEEEEeCCCeEEEEeCEEEEcCCCcCC-CCCCCCccCCCCEECh------h
Confidence            00000 11122348999886 788888776777777775 6999999999999997 56666642 3555432      2


Q ss_pred             HHHHhhhcCCeEEEEcCChHHHHHHHHHHhCCCeEe------------------eeHHHHHHcCcEEEcCCeEEEEEeCC
Q 012165          199 ALISSLEKAKKVVVVGGGYIGMEVAAAAVGWKLDTT------------------RYEQLYQQNGVKFVKGASIKNLEAGS  260 (469)
Q Consensus       199 ~~~~~~~~~~~vvVvG~G~~g~e~A~~l~~~g~~v~------------------~~~~~l~~~gV~~~~~~~v~~i~~~~  260 (469)
                      .+......+++++|||+|++|+|+|..|.++|.+|+                  .+.+.+++.||++++++.+++++.+ 
T Consensus       150 ~~~~~~~~~~~v~ViGgG~~g~E~A~~l~~~g~~Vtli~~~~~~l~~~~~~~~~~l~~~l~~~gV~v~~~~~v~~i~~~-  228 (441)
T PRK08010        150 GLLNLKELPGHLGILGGGYIGVEFASMFANFGSKVTILEAASLFLPREDRDIADNIATILRDQGVDIILNAHVERISHH-  228 (441)
T ss_pred             HhhcccccCCeEEEECCCHHHHHHHHHHHHCCCeEEEEecCCCCCCCcCHHHHHHHHHHHHhCCCEEEeCCEEEEEEEc-
Confidence            333333467899999999999999999999999987                  3456788999999999999999854 


Q ss_pred             CCcEEEEEcCCCCEEeCCEEEEccCCccCCch--hhhcCCccc-CCCEEeCCCCCCCCCceEEeccccccCCccCCcccc
Q 012165          261 DGRVAAVKLEDGSTIDADTIVIGIGAKPTVSP--FERVGLNSS-VGGIQVDGQFRTRMPGIFAIGDVAAFPLKMYDRTAR  337 (469)
Q Consensus       261 ~~~v~~v~~~~g~~i~~D~vi~a~G~~p~~~~--~~~~gl~~~-~g~i~Vd~~~~t~~~~Vfa~GD~a~~~~~~~~~~~~  337 (469)
                      ++.+ .+.++++ ++++|.|++++|.+||+++  +++++++.+ +|+|.||+++||++|||||+|||+..+.        
T Consensus       229 ~~~v-~v~~~~g-~i~~D~vl~a~G~~pn~~~l~~~~~gl~~~~~G~i~vd~~~~Ts~~~IyA~GD~~~~~~--------  298 (441)
T PRK08010        229 ENQV-QVHSEHA-QLAVDALLIASGRQPATASLHPENAGIAVNERGAIVVDKYLHTTADNIWAMGDVTGGLQ--------  298 (441)
T ss_pred             CCEE-EEEEcCC-eEEeCEEEEeecCCcCCCCcCchhcCcEECCCCcEEECCCcccCCCCEEEeeecCCCcc--------
Confidence            3333 3555555 5899999999999999886  467788775 5789999999999999999999998643        


Q ss_pred             cchHHHHHHHHHHHHHHHhcCCCC---CCCCCCceeeecccccCCCcceeeEEeecCCC-------cEEE-E---cc---
Q 012165          338 VEHVDHARQSAQHCIKALLSAQTH---TYDYLPYFYSRVFEYEGSPRKVWWQFFGDNVG-------ETIE-I---GN---  400 (469)
Q Consensus       338 ~~~~~~A~~~a~~~a~~i~~~~~~---~~~~~p~~~~~~~~~~g~~~~~~~~~~G~~~~-------~~~~-~---~~---  400 (469)
                      ..++  |..+|+.++++|++....   .+..+|+  ...+..+       +..+|.+..       +... .   ..   
T Consensus       299 ~~~~--a~~~~~~~~~~~~g~~~~~~~~~~~~p~--~~~~~p~-------ia~vGlte~~a~~~g~~~~~~~~~~~~~~~  367 (441)
T PRK08010        299 FTYI--SLDDYRIVRDELLGEGKRSTDDRKNVPY--SVFMTPP-------LSRVGMTEEQARESGADIQVVTLPVAAIPR  367 (441)
T ss_pred             chhH--HHHHHHHHHHHHcCCCCcccCccCCCCE--EEECCCC-------ceeeeCCHHHHHHcCCCeEEEEEecCcChh
Confidence            2243  888899999999864221   2344564  2222222       344454321       0100 0   00   


Q ss_pred             -----CCCcEEEEEEe--CCEEEEEEeecCChHHhHHH-HHHHhCCCCCCh--hhhcCCCcHHHHHHHHHh
Q 012165          401 -----FDPKIATFWID--SGKLKGVLVESGSPEEFQLL-PTLARSQPFVDK--AKLQQASSVEEALEIARA  461 (469)
Q Consensus       401 -----~~~~~~~~~~~--~~~l~g~~~~~~~~~~~~~~-~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~  461 (469)
                           ....+.|++++  +++|+|+++++.++.++... .-+|..+.+++.  ..+..||++.|.+..|+.
T Consensus       368 ~~~~~~~~g~~kli~d~~~~~ilG~~~~g~~a~e~i~~~~~ai~~~~t~~~l~~~~~~hPt~~e~~~~~~~  438 (441)
T PRK08010        368 ARVMNDTRGVLKAIVDNKTQRILGASLLCVDSHEMINIVKMVMDAGLPYSILRDQIFTHPSMSESLNDLFS  438 (441)
T ss_pred             hhhcCCCceEEEEEEECCCCEEEEEEEECCCHHHHHHHHHHHHHCCCCHHHHhhccccCCchHHHHHHHHH
Confidence                 01236777774  69999999888777665554 456788877763  334679999999998865

>PRK05976 dihydrolipoamide dehydrogenase; Validated

Probab=100.00  E-value=5.5e-38  Score=320.67  Aligned_cols=383  Identities=21%  Similarity=0.285  Sum_probs=251.7

Q ss_pred             CCCcEEEEcCcHHHHHHHHHHHHcCCCCCcEEEEcCCCCCCCC---CCCC-cccccC------------CCC----CCCC
Q 012165           50 ENREFVIVGGGNAAGYAARTFVEHGMADGRLCIVSKEAYAPYE---RPAL-TKGYLF------------PLD----KKPA  109 (469)
Q Consensus        50 ~~~~vvIIGgG~AGl~aA~~L~~~g~~~~~V~vie~~~~~~~~---~~~l-~~~~~~------------~~~----~~~~  109 (469)
                      ..||++||||||||++||.+|+++|.   +|+|||++.. +..   +... +|.++.            ...    ....
T Consensus         3 ~~ydvvVIG~GpaG~~aA~~aa~~G~---~v~lie~~~~-GG~c~~~gciPsk~l~~~a~~~~~~~~~~~~g~~~~~~~~   78 (472)
T PRK05976          3 KEYDLVIIGGGPGGYVAAIRAGQLGL---KTALVEKGKL-GGTCLHKGCIPSKALLHSAEVFQTAKKASPFGISVSGPAL   78 (472)
T ss_pred             ccccEEEECCCHHHHHHHHHHHhCCC---eEEEEEccCC-CcceEcCCcCchHHHHHHHHHHHHHHHHHhcCccCCCCcc
Confidence            46899999999999999999999987   7999998632 211   1111 111110            000    0000


Q ss_pred             CCCCCcccc---CCCCCCCCHhHHHHCCcEEEeCCcEEEEeCC-------CcEEEeCCC--eEEEeccEEeccCCCCCcC
Q 012165          110 RLPGFHTCV---GSGGERQTPEWYKEKGIEMIYQDPVTSIDIE-------KQTLITNSG--KLLKYGSLIVATGCTASRF  177 (469)
Q Consensus       110 ~~~~~~~~~---~~~~~~~~~~~~~~~~i~~~~~~~v~~id~~-------~~~v~~~~g--~~~~yd~lVlAtG~~~~~~  177 (469)
                      +++......   -........+.+++.+++++.+ ++..+|+.       ..+|.+.+|  .++.||+||||||++|..+
T Consensus        79 ~~~~~~~~~~~~~~~l~~~~~~~~~~~gv~~~~g-~a~~i~~~~~~~~~~~~~v~~~~g~~~~~~~d~lViATGs~p~~~  157 (472)
T PRK05976         79 DFAKVQERKDGIVDRLTKGVAALLKKGKIDVFHG-IGRILGPSIFSPMPGTVSVETETGENEMIIPENLLIATGSRPVEL  157 (472)
T ss_pred             CHHHHHHHHHHHHHHHHHHHHHHHHhCCCEEEEE-EEEEeCCCCCcCCceEEEEEeCCCceEEEEcCEEEEeCCCCCCCC
Confidence            100000000   0000001123456679999996 78888887       556777676  5799999999999998644


Q ss_pred             CCCCCCCcCcEEEecCHHHHHHHHHhhhcCCeEEEEcCChHHHHHHHHHHhCCCeEe------------------eeHHH
Q 012165          178 PEKIGGYLPGVHYIRDVADADALISSLEKAKKVVVVGGGYIGMEVAAAAVGWKLDTT------------------RYEQL  239 (469)
Q Consensus       178 ~~~~g~~~~~v~~~~~~~~~~~~~~~~~~~~~vvVvG~G~~g~e~A~~l~~~g~~v~------------------~~~~~  239 (469)
                      |..   ..++.+.+ +..+..   .....+++++|||+|++|+|+|..|+++|.+|+                  .+.+.
T Consensus       158 p~~---~~~~~~~~-~~~~~~---~~~~~~~~vvIIGgG~~G~E~A~~l~~~g~~Vtli~~~~~il~~~~~~~~~~l~~~  230 (472)
T PRK05976        158 PGL---PFDGEYVI-SSDEAL---SLETLPKSLVIVGGGVIGLEWASMLADFGVEVTVVEAADRILPTEDAELSKEVARL  230 (472)
T ss_pred             CCC---CCCCceEE-cchHhh---CccccCCEEEEECCCHHHHHHHHHHHHcCCeEEEEEecCccCCcCCHHHHHHHHHH
Confidence            422   23332222 222222   222347899999999999999999999999987                  34567


Q ss_pred             HHHcCcEEEcCCeEEEEEeCCCCcEEEEEcCCC--CEEeCCEEEEccCCccCCch--hhhcCCcccCCCEEeCCCCCCCC
Q 012165          240 YQQNGVKFVKGASIKNLEAGSDGRVAAVKLEDG--STIDADTIVIGIGAKPTVSP--FERVGLNSSVGGIQVDGQFRTRM  315 (469)
Q Consensus       240 l~~~gV~~~~~~~v~~i~~~~~~~v~~v~~~~g--~~i~~D~vi~a~G~~p~~~~--~~~~gl~~~~g~i~Vd~~~~t~~  315 (469)
                      +++.||++++++.+++++..+++.+..+.+.+|  +++++|.+|+++|.+|+++.  ++..++..++|++.||++++|+.
T Consensus       231 l~~~gI~i~~~~~v~~i~~~~~~~~~~~~~~~g~~~~i~~D~vi~a~G~~p~~~~l~l~~~~~~~~~g~i~Vd~~l~ts~  310 (472)
T PRK05976        231 LKKLGVRVVTGAKVLGLTLKKDGGVLIVAEHNGEEKTLEADKVLVSVGRRPNTEGIGLENTDIDVEGGFIQIDDFCQTKE  310 (472)
T ss_pred             HHhcCCEEEeCcEEEEEEEecCCCEEEEEEeCCceEEEEeCEEEEeeCCccCCCCCCchhcCceecCCEEEECCCcccCC
Confidence            888999999999999997422333434455666  36999999999999999875  45666665668899999999999


Q ss_pred             CceEEeccccccCCccCCcccccchHHHHHHHHHHHHHHHhcCCCCCCC--CCCceeeecccccCCCcceeeEEeecCCC
Q 012165          316 PGIFAIGDVAAFPLKMYDRTARVEHVDHARQSAQHCIKALLSAQTHTYD--YLPYFYSRVFEYEGSPRKVWWQFFGDNVG  393 (469)
Q Consensus       316 ~~Vfa~GD~a~~~~~~~~~~~~~~~~~~A~~~a~~~a~~i~~~~~~~~~--~~p~~~~~~~~~~g~~~~~~~~~~G~~~~  393 (469)
                      |+|||+|||+..+.          ....|..+|+.++.+|++.....+.  ..|.  ...++.+       +..+|....
T Consensus       311 ~~IyAiGD~~~~~~----------~~~~A~~~g~~aa~~i~g~~~~~~~~~~~p~--~~~~~p~-------~a~vG~te~  371 (472)
T PRK05976        311 RHIYAIGDVIGEPQ----------LAHVAMAEGEMAAEHIAGKKPRPFDYAAIPA--CCYTDPE-------VASVGLTEE  371 (472)
T ss_pred             CCEEEeeecCCCcc----------cHHHHHHHHHHHHHHHcCCCCCCCCCCCCCE--EEECcCc-------eEEEeCCHH
Confidence            99999999986432          3456999999999999865433333  3443  2222221       333443321


Q ss_pred             -------cEEE--E--c--------cCCCcEEEEEEe--CCEEEEEEeecCChHHhHH-HHHHHhCCCCCCh--hhhcCC
Q 012165          394 -------ETIE--I--G--------NFDPKIATFWID--SGKLKGVLVESGSPEEFQL-LPTLARSQPFVDK--AKLQQA  449 (469)
Q Consensus       394 -------~~~~--~--~--------~~~~~~~~~~~~--~~~l~g~~~~~~~~~~~~~-~~~~~~~~~~~~~--~~~~~~  449 (469)
                             +...  .  .        .....+.++.++  +++|+|+++++.++.++.. +..+|+.+.+++.  ..++.|
T Consensus       372 ~a~~~g~~~~~~~~~~~~~~~~~~~~~~~g~~kli~d~~~~~ilG~~~~g~~a~e~i~~~~~ai~~~~t~~~l~~~~~~h  451 (472)
T PRK05976        372 EAKEAGYDVKVGKFPFAANGKALTYGESDGFVKVVADRDTHDILGVQAVGPHVTELISEFALALELGARLWEVAGTIHPH  451 (472)
T ss_pred             HHHHcCCCEEEEEEECCcchhhhhcCCCceEEEEEEECCCCEEEEEEEECCCHHHHHHHHHHHHHCCCCHHHHhhCcccC
Confidence                   1100  0  0        011236677664  5899999987877766544 4556788888762  234679


Q ss_pred             CcHHHHHHHHHhcC
Q 012165          450 SSVEEALEIARAAL  463 (469)
Q Consensus       450 ~~~~~~~~~~~~~~  463 (469)
                      ||+.|.++.|++++
T Consensus       452 Pt~~e~~~~~~~~~  465 (472)
T PRK05976        452 PTLSEAIQEAALAA  465 (472)
T ss_pred             CChHHHHHHHHHHh
Confidence            99999999998764

>PRK07845 flavoprotein disulfide reductase; Reviewed

Probab=100.00  E-value=1.1e-38  Score=324.68  Aligned_cols=383  Identities=19%  Similarity=0.291  Sum_probs=256.2

Q ss_pred             CCcEEEEcCcHHHHHHHHHHHHcCCCCCcEEEEcCCCCCC---CCCCCCcccccCCC------------C-------CCC
Q 012165           51 NREFVIVGGGNAAGYAARTFVEHGMADGRLCIVSKEAYAP---YERPALTKGYLFPL------------D-------KKP  108 (469)
Q Consensus        51 ~~~vvIIGgG~AGl~aA~~L~~~g~~~~~V~vie~~~~~~---~~~~~l~~~~~~~~------------~-------~~~  108 (469)
                      |++++|||+|++|+.+|..++++|.   +|+|||++..-+   ...+.-+|.++...            .       ...
T Consensus         1 ~~~vvviG~G~~G~~~a~~~~~~g~---~v~~~e~~~~gG~c~~~gciPsK~l~~~a~~~~~~~~~~~~g~~~~~~~~~~   77 (466)
T PRK07845          1 MTRIVIIGGGPGGYEAALVAAQLGA---DVTVIERDGLGGAAVLTDCVPSKTLIATAEVRTELRRAAELGIRFIDDGEAR   77 (466)
T ss_pred             CCcEEEECCCHHHHHHHHHHHhCCC---eEEEEEccCCCCcccccCCcchHHHHHHHHHHHHHHHHHhCCcccccCcccc
Confidence            4689999999999999999999987   799999875211   00011112111000            0       000


Q ss_pred             CCCCCCcccc---CCCCCCCCHhHHHHCCcEEEeCCcEEE----EeCCCcEEEeCCCe--EEEeccEEeccCCCCCcCCC
Q 012165          109 ARLPGFHTCV---GSGGERQTPEWYKEKGIEMIYQDPVTS----IDIEKQTLITNSGK--LLKYGSLIVATGCTASRFPE  179 (469)
Q Consensus       109 ~~~~~~~~~~---~~~~~~~~~~~~~~~~i~~~~~~~v~~----id~~~~~v~~~~g~--~~~yd~lVlAtG~~~~~~~~  179 (469)
                      .+++......   -........+.+++++++++.+ ++..    ++.....|.+.+|+  ++.||+||||||++|..+| 
T Consensus        78 ~~~~~~~~~~~~~~~~~~~~~~~~l~~~gV~~~~g-~~~~~~~~~~~~~v~V~~~~g~~~~~~~d~lViATGs~p~~~p-  155 (466)
T PRK07845         78 VDLPAVNARVKALAAAQSADIRARLEREGVRVIAG-RGRLIDPGLGPHRVKVTTADGGEETLDADVVLIATGASPRILP-  155 (466)
T ss_pred             cCHHHHHHHHHHHHHHHHHHHHHHHHHCCCEEEEE-EEEEeecccCCCEEEEEeCCCceEEEecCEEEEcCCCCCCCCC-
Confidence            0000000000   0000012234566789999986 6666    33344455556665  6999999999999987444 


Q ss_pred             CCCCCcCcEEEecCHHHHHHHHHhhhcCCeEEEEcCChHHHHHHHHHHhCCCeEe------------------eeHHHHH
Q 012165          180 KIGGYLPGVHYIRDVADADALISSLEKAKKVVVVGGGYIGMEVAAAAVGWKLDTT------------------RYEQLYQ  241 (469)
Q Consensus       180 ~~g~~~~~v~~~~~~~~~~~~~~~~~~~~~vvVvG~G~~g~e~A~~l~~~g~~v~------------------~~~~~l~  241 (469)
                      .++...+.+++..++.+.      ...+++++|||+|.+|+|+|..|+++|.+|+                  .+.+.|+
T Consensus       156 ~~~~~~~~v~~~~~~~~~------~~~~~~vvVIGgG~ig~E~A~~l~~~g~~Vtli~~~~~~l~~~d~~~~~~l~~~L~  229 (466)
T PRK07845        156 TAEPDGERILTWRQLYDL------DELPEHLIVVGSGVTGAEFASAYTELGVKVTLVSSRDRVLPGEDADAAEVLEEVFA  229 (466)
T ss_pred             CCCCCCceEEeehhhhcc------cccCCeEEEECCCHHHHHHHHHHHHcCCeEEEEEcCCcCCCCCCHHHHHHHHHHHH
Confidence            223223445554433322      1346899999999999999999999999998                  3457788


Q ss_pred             HcCcEEEcCCeEEEEEeCCCCcEEEEEcCCCCEEeCCEEEEccCCccCCch--hhhcCCccc-CCCEEeCCCCCCCCCce
Q 012165          242 QNGVKFVKGASIKNLEAGSDGRVAAVKLEDGSTIDADTIVIGIGAKPTVSP--FERVGLNSS-VGGIQVDGQFRTRMPGI  318 (469)
Q Consensus       242 ~~gV~~~~~~~v~~i~~~~~~~v~~v~~~~g~~i~~D~vi~a~G~~p~~~~--~~~~gl~~~-~g~i~Vd~~~~t~~~~V  318 (469)
                      ++||++++++.+.+++..+ +.+ .+.+.+|+++++|.|++++|++||+++  +++++++.+ +|+|.||+++||++|||
T Consensus       230 ~~gV~i~~~~~v~~v~~~~-~~~-~v~~~~g~~l~~D~vl~a~G~~pn~~~l~l~~~gl~~~~~G~i~Vd~~~~Ts~~~I  307 (466)
T PRK07845        230 RRGMTVLKRSRAESVERTG-DGV-VVTLTDGRTVEGSHALMAVGSVPNTAGLGLEEAGVELTPSGHITVDRVSRTSVPGI  307 (466)
T ss_pred             HCCcEEEcCCEEEEEEEeC-CEE-EEEECCCcEEEecEEEEeecCCcCCCCCCchhhCceECCCCcEeECCCcccCCCCE
Confidence            9999999999999997543 333 467788899999999999999999986  678888875 57799999999999999


Q ss_pred             EEeccccccCCccCCcccccchHHHHHHHHHHHHHHHhcCCCC--CCCCCCceeeecccccCCCcceeeEEeecCCC---
Q 012165          319 FAIGDVAAFPLKMYDRTARVEHVDHARQSAQHCIKALLSAQTH--TYDYLPYFYSRVFEYEGSPRKVWWQFFGDNVG---  393 (469)
Q Consensus       319 fa~GD~a~~~~~~~~~~~~~~~~~~A~~~a~~~a~~i~~~~~~--~~~~~p~~~~~~~~~~g~~~~~~~~~~G~~~~---  393 (469)
                      ||+|||+..+.          .+..|..+|+.++.++++....  .+..+|.   ..|..+-      +..+|....   
T Consensus       308 yA~GD~~~~~~----------l~~~A~~~g~~aa~~i~g~~~~~~~~~~~p~---~vf~~p~------~a~vGlte~~a~  368 (466)
T PRK07845        308 YAAGDCTGVLP----------LASVAAMQGRIAMYHALGEAVSPLRLKTVAS---NVFTRPE------IATVGVSQAAID  368 (466)
T ss_pred             EEEeeccCCcc----------chhHHHHHHHHHHHHHcCCCCCcCCCCCCCE---EEeCCCc------ceeecCCHHHHH
Confidence            99999997532          3456999999999999964322  2334553   4443221      333443221   


Q ss_pred             ----cE--EE--Ec--------cCCCcEEEEEEe--CCEEEEEEeecCChHHhHH-HHHHHhCCCCCCh--hhhcCCCcH
Q 012165          394 ----ET--IE--IG--------NFDPKIATFWID--SGKLKGVLVESGSPEEFQL-LPTLARSQPFVDK--AKLQQASSV  452 (469)
Q Consensus       394 ----~~--~~--~~--------~~~~~~~~~~~~--~~~l~g~~~~~~~~~~~~~-~~~~~~~~~~~~~--~~~~~~~~~  452 (469)
                          +.  ..  ..        +....|.|++++  +++|+|+++++.++.++.. +..+|+.+.+++.  .....||++
T Consensus       369 ~~g~~~~~~~~~~~~~~~~~~~~~~~g~~kli~d~~~~~ilG~~~~g~~a~e~i~~~~~ai~~~~t~~~l~~~~~~hPt~  448 (466)
T PRK07845        369 SGEVPARTVMLPLATNPRAKMSGLRDGFVKLFCRPGTGVVIGGVVVAPRASELILPIALAVQNRLTVDDLAQTFTVYPSL  448 (466)
T ss_pred             hCCCceEEEEEecccCchhhhcCCCceEEEEEEECCCCEEEEEEEECCCHHHHHHHHHHHHHcCCCHHHHhcCcCCCCCH
Confidence                00  00  00        011236777774  5999999988877765444 4556788887762  234679999


Q ss_pred             HHHHHHHHhcCCc
Q 012165          453 EEALEIARAALPV  465 (469)
Q Consensus       453 ~~~~~~~~~~~~~  465 (469)
                      .|.++.|++.+..
T Consensus       449 ~e~~~~~~~~~~~  461 (466)
T PRK07845        449 SGSITEAARRLMA  461 (466)
T ss_pred             HHHHHHHHHHhhc
Confidence            9999999876543

>PTZ00058 glutathione reductase; Provisional

Probab=100.00  E-value=4.2e-38  Score=322.66  Aligned_cols=391  Identities=15%  Similarity=0.229  Sum_probs=250.3

Q ss_pred             CCCCCcEEEEcCcHHHHHHHHHHHHcCCCCCcEEEEcCCCCCC--CCCCCC-cccccCCCCCC----------------C
Q 012165           48 ANENREFVIVGGGNAAGYAARTFVEHGMADGRLCIVSKEAYAP--YERPAL-TKGYLFPLDKK----------------P  108 (469)
Q Consensus        48 ~~~~~~vvIIGgG~AGl~aA~~L~~~g~~~~~V~vie~~~~~~--~~~~~l-~~~~~~~~~~~----------------~  108 (469)
                      ...++|++|||||+||++||..+++.|.   +|+|||++..-+  -++-.+ +|.++.. ...                .
T Consensus        45 ~~~~yDvvVIG~G~aG~~aA~~aa~~G~---~ValIEk~~~GGtCln~GCiPsK~l~~~-a~~~~~~~~~~~~Gi~~~~~  120 (561)
T PTZ00058         45 PRMVYDLIVIGGGSGGMAAARRAARNKA---KVALVEKDYLGGTCVNVGCVPKKIMFNA-ASIHDILENSRHYGFDTQFS  120 (561)
T ss_pred             CCccccEEEECcCHHHHHHHHHHHHcCC---eEEEEecccccccccccCCCCCchhhhh-cccHHHHHHHHhcCCCccCc
Confidence            3467899999999999999999999987   799999874221  011111 2211110 000                0


Q ss_pred             CCCCCCccccC---CCCCCCCHhHHHHCCcEEEeCCcEEEEeCCC--------------------cEE------EeCCCe
Q 012165          109 ARLPGFHTCVG---SGGERQTPEWYKEKGIEMIYQDPVTSIDIEK--------------------QTL------ITNSGK  159 (469)
Q Consensus       109 ~~~~~~~~~~~---~~~~~~~~~~~~~~~i~~~~~~~v~~id~~~--------------------~~v------~~~~g~  159 (469)
                      .+++.......   ........+.+++.+++++.|.. .-++...                    .+|      .+++|+
T Consensus       121 ~d~~~~~~~~~~~~~~~~~~~~~~l~~~gv~~~~G~a-~f~~~~~v~v~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~g~  199 (561)
T PTZ00058        121 FNLPLLVERRDKYIRRLNDIYRQNLKKDNVEYFEGKG-SLLSENQVLIKKVSQVDGEADESDDDEVTIVSAGVSQLDDGQ  199 (561)
T ss_pred             cCHHHHHHHHHHHHHHHHHHHHHHHhhCCcEEEEEEE-EEecCCEEEeeccccccccccccccccceeeeccceecCCCc
Confidence            00000000000   00001122345667999988743 2222111                    112      234667


Q ss_pred             EEEeccEEeccCCCCCcCCCCCCCCcCcEEEecCHHHHHHHHHhhhcCCeEEEEcCChHHHHHHHHHHhCCCeEe-----
Q 012165          160 LLKYGSLIVATGCTASRFPEKIGGYLPGVHYIRDVADADALISSLEKAKKVVVVGGGYIGMEVAAAAVGWKLDTT-----  234 (469)
Q Consensus       160 ~~~yd~lVlAtG~~~~~~~~~~g~~~~~v~~~~~~~~~~~~~~~~~~~~~vvVvG~G~~g~e~A~~l~~~g~~v~-----  234 (469)
                      +++||+||||||++|. .|.++|.+  .+.   +   .+.+.. +..+++++|||+|++|+|+|..|..+|.+|+     
T Consensus       200 ~i~ad~lVIATGS~P~-~P~IpG~~--~v~---t---s~~~~~-l~~pk~VvIIGgG~iGlE~A~~l~~~G~~Vtli~~~  269 (561)
T PTZ00058        200 VIEGKNILIAVGNKPI-FPDVKGKE--FTI---S---SDDFFK-IKEAKRIGIAGSGYIAVELINVVNRLGAESYIFARG  269 (561)
T ss_pred             EEECCEEEEecCCCCC-CCCCCCce--eEE---E---HHHHhh-ccCCCEEEEECCcHHHHHHHHHHHHcCCcEEEEEec
Confidence            8999999999999996 56555532  122   1   233332 2348999999999999999999999999998     


Q ss_pred             -------------eeHHHHHHcCcEEEcCCeEEEEEeCCCCcEEEEEcCCC-CEEeCCEEEEccCCccCCchhh--hcCC
Q 012165          235 -------------RYEQLYQQNGVKFVKGASIKNLEAGSDGRVAAVKLEDG-STIDADTIVIGIGAKPTVSPFE--RVGL  298 (469)
Q Consensus       235 -------------~~~~~l~~~gV~~~~~~~v~~i~~~~~~~v~~v~~~~g-~~i~~D~vi~a~G~~p~~~~~~--~~gl  298 (469)
                                   .+.+.+++.||+++++..+.+++..+++.+. +.+.++ +++++|.|++++|++||++++.  ..++
T Consensus       270 ~~il~~~d~~i~~~l~~~L~~~GV~i~~~~~V~~I~~~~~~~v~-v~~~~~~~~i~aD~VlvA~Gr~Pn~~~L~l~~~~~  348 (561)
T PTZ00058        270 NRLLRKFDETIINELENDMKKNNINIITHANVEEIEKVKEKNLT-IYLSDGRKYEHFDYVIYCVGRSPNTEDLNLKALNI  348 (561)
T ss_pred             ccccccCCHHHHHHHHHHHHHCCCEEEeCCEEEEEEecCCCcEE-EEECCCCEEEECCEEEECcCCCCCccccCccccce
Confidence                         3456788899999999999999864333332 344444 5799999999999999998763  4444


Q ss_pred             cccCCCEEeCCCCCCCCCceEEeccccccCCc-----------------------cCCccc-ccchHHHHHHHHHHHHHH
Q 012165          299 NSSVGGIQVDGQFRTRMPGIFAIGDVAAFPLK-----------------------MYDRTA-RVEHVDHARQSAQHCIKA  354 (469)
Q Consensus       299 ~~~~g~i~Vd~~~~t~~~~Vfa~GD~a~~~~~-----------------------~~~~~~-~~~~~~~A~~~a~~~a~~  354 (469)
                      ..++|+|.||+++||++|+|||+|||+..+..                       ..+... .......|..+|+.+|+|
T Consensus       349 ~~~~G~I~VDe~lqTs~p~IYA~GDv~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~la~~A~~~g~~aa~n  428 (561)
T PTZ00058        349 KTPKGYIKVDDNQRTSVKHIYAVGDCCMVKKNQEIEDLNLLKLYNEEPYLKKKENTSGESYYNVQLTPVAINAGRLLADR  428 (561)
T ss_pred             ecCCCeEEECcCCccCCCCEEEeEeccCccccccccccccccccccccccccccccccccccCcCchHHHHHHHHHHHHH
Confidence            45568899999999999999999999983220                       011111 234556799999999999


Q ss_pred             HhcCCC--CCCCCCCceeeecccccCCCcceeeEEeecCCC---------cEEE-------------E---ccCCCcEEE
Q 012165          355 LLSAQT--HTYDYLPYFYSRVFEYEGSPRKVWWQFFGDNVG---------ETIE-------------I---GNFDPKIAT  407 (469)
Q Consensus       355 i~~~~~--~~~~~~p~~~~~~~~~~g~~~~~~~~~~G~~~~---------~~~~-------------~---~~~~~~~~~  407 (469)
                      |++...  ..+..+|.   .+|..+-      +..+|.+..         ....             .   +.....+.+
T Consensus       429 i~g~~~~~~~~~~ip~---~vft~pe------iA~vGlte~eA~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~K  499 (561)
T PTZ00058        429 LFGPFSRTTNYKLIPS---VIFSHPP------IGTIGLSEQEAIDIYGKENVKIYESRFTNLFFSVYDMDPAQKEKTYLK  499 (561)
T ss_pred             HhCCCCcccCCCCCCe---EEeCCch------heeeeCCHHHHHHhcCCCcEEEEEeecchhhhhhhcccccCCCCeEEE
Confidence            997422  23445664   3444321      233343221         0000             0   001123666


Q ss_pred             EEEe--CCEEEEEEeecCChHHhHH-HHHHHhCCCCCCh--hhhcCCCcHHHHHHHHHhcC
Q 012165          408 FWID--SGKLKGVLVESGSPEEFQL-LPTLARSQPFVDK--AKLQQASSVEEALEIARAAL  463 (469)
Q Consensus       408 ~~~~--~~~l~g~~~~~~~~~~~~~-~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~  463 (469)
                      ++++  +++|+|+++++.++.++.. +..+++.+.+++.  ..++.|||+.|++..++..+
T Consensus       500 li~~~~t~~ILG~~ivG~~a~elI~~~a~ai~~~~t~~dl~~~~~~hPt~~e~~~~~~~~~  560 (561)
T PTZ00058        500 LVCVGKEELIKGLHIVGLNADEILQGFAVALKMNATKADFDETIPIHPTAAEEFVTMAPWM  560 (561)
T ss_pred             EEEECCCCEEEEEEEECCCHHHHHHHHHHHHHcCCCHHHHhhcccCCCChHHHHHHhccCC
Confidence            6664  5999999988877766544 4556788877763  33468999999999988765

>PLN02546 glutathione reductase

Probab=100.00  E-value=9.2e-39  Score=327.75  Aligned_cols=375  Identities=21%  Similarity=0.247  Sum_probs=252.8

Q ss_pred             CCCcEEEEcCcHHHHHHHHHHHHcCCCCCcEEEEcCC---------CCCCC---CCCCC-cccccC--------------
Q 012165           50 ENREFVIVGGGNAAGYAARTFVEHGMADGRLCIVSKE---------AYAPY---ERPAL-TKGYLF--------------  102 (469)
Q Consensus        50 ~~~~vvIIGgG~AGl~aA~~L~~~g~~~~~V~vie~~---------~~~~~---~~~~l-~~~~~~--------------  102 (469)
                      ..|||+|||+|+||+.||..++++|.   +|+|||+.         ..++.   ++-.. +|.++.              
T Consensus        78 ~~yDvvVIG~GpaG~~aA~~aa~~G~---~V~liE~~~~~~~~~~~~~~GGtC~n~GCiPsK~l~~aa~~~~~~~~~~~~  154 (558)
T PLN02546         78 YDFDLFTIGAGSGGVRASRFASNFGA---SAAVCELPFATISSDTLGGVGGTCVLRGCVPKKLLVYASKYSHEFEESRGF  154 (558)
T ss_pred             CCCCEEEECCCHHHHHHHHHHHHCCC---eEEEEeccccccccccCCCccCcccCcchHHHHHHHHHHHHHHHHHhhhhc
Confidence            35899999999999999999999987   89999951         11110   00011 111110              


Q ss_pred             CCC---CCCCCCCCCcccc---CCCCCCCCHhHHHHCCcEEEeCCcEEEEeCCCcEEEeCCCeEEEeccEEeccCCCCCc
Q 012165          103 PLD---KKPARLPGFHTCV---GSGGERQTPEWYKEKGIEMIYQDPVTSIDIEKQTLITNSGKLLKYGSLIVATGCTASR  176 (469)
Q Consensus       103 ~~~---~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~i~~~~~~~v~~id~~~~~v~~~~g~~~~yd~lVlAtG~~~~~  176 (469)
                      ...   ....++.......   -..........+++.+++++.+ ++..+++.  +|.+ +|+++.||+||||||++|. 
T Consensus       155 g~~~~~~~~~d~~~~~~~k~~~~~~l~~~~~~~l~~~gV~~i~G-~a~~vd~~--~V~v-~G~~~~~D~LVIATGs~p~-  229 (558)
T PLN02546        155 GWKYETEPKHDWNTLIANKNAELQRLTGIYKNILKNAGVTLIEG-RGKIVDPH--TVDV-DGKLYTARNILIAVGGRPF-  229 (558)
T ss_pred             CcccCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHhCCcEEEEe-EEEEccCC--EEEE-CCEEEECCEEEEeCCCCCC-
Confidence            000   0000110000000   0000111223456679999986 67777764  5665 5778999999999999996 


Q ss_pred             CCCCCCCCcCcEEEecCHHHHHHHHHhhhcCCeEEEEcCChHHHHHHHHHHhCCCeEe------------------eeHH
Q 012165          177 FPEKIGGYLPGVHYIRDVADADALISSLEKAKKVVVVGGGYIGMEVAAAAVGWKLDTT------------------RYEQ  238 (469)
Q Consensus       177 ~~~~~g~~~~~v~~~~~~~~~~~~~~~~~~~~~vvVvG~G~~g~e~A~~l~~~g~~v~------------------~~~~  238 (469)
                      .|.++|.     ....   +++.+......+++++|||+|++|+|+|..|..++.+|+                  .+.+
T Consensus       230 ~P~IpG~-----~~v~---~~~~~l~~~~~~k~V~VIGgG~iGvE~A~~L~~~g~~Vtlv~~~~~il~~~d~~~~~~l~~  301 (558)
T PLN02546        230 IPDIPGI-----EHAI---DSDAALDLPSKPEKIAIVGGGYIALEFAGIFNGLKSDVHVFIRQKKVLRGFDEEVRDFVAE  301 (558)
T ss_pred             CCCCCCh-----hhcc---CHHHHHhccccCCeEEEECCCHHHHHHHHHHHhcCCeEEEEEeccccccccCHHHHHHHHH
Confidence            5655542     2222   334444434568999999999999999999999999887                  3457


Q ss_pred             HHHHcCcEEEcCCeEEEEEeCCCCcEEEEEcCCCCEEeCCEEEEccCCccCCch--hhhcCCccc-CCCEEeCCCCCCCC
Q 012165          239 LYQQNGVKFVKGASIKNLEAGSDGRVAAVKLEDGSTIDADTIVIGIGAKPTVSP--FERVGLNSS-VGGIQVDGQFRTRM  315 (469)
Q Consensus       239 ~l~~~gV~~~~~~~v~~i~~~~~~~v~~v~~~~g~~i~~D~vi~a~G~~p~~~~--~~~~gl~~~-~g~i~Vd~~~~t~~  315 (469)
                      .|++.||++++++.+.+++..+++.+ .+.+.+++...+|.||+++|++||+++  ++++|++.+ +|+|.||+++||++
T Consensus       302 ~L~~~GV~i~~~~~v~~i~~~~~g~v-~v~~~~g~~~~~D~Viva~G~~Pnt~~L~le~~gl~~d~~G~I~VD~~l~Ts~  380 (558)
T PLN02546        302 QMSLRGIEFHTEESPQAIIKSADGSL-SLKTNKGTVEGFSHVMFATGRKPNTKNLGLEEVGVKMDKNGAIEVDEYSRTSV  380 (558)
T ss_pred             HHHHCCcEEEeCCEEEEEEEcCCCEE-EEEECCeEEEecCEEEEeeccccCCCcCChhhcCCcCCCCCcEeECCCceeCC
Confidence            78899999999999999985444543 456666655669999999999999986  578888876 57799999999999


Q ss_pred             CceEEeccccccCCccCCcccccchHHHHHHHHHHHHHHHhcCCC--CCCCCCCceeeecccccCCCcceeeEEeecCCC
Q 012165          316 PGIFAIGDVAAFPLKMYDRTARVEHVDHARQSAQHCIKALLSAQT--HTYDYLPYFYSRVFEYEGSPRKVWWQFFGDNVG  393 (469)
Q Consensus       316 ~~Vfa~GD~a~~~~~~~~~~~~~~~~~~A~~~a~~~a~~i~~~~~--~~~~~~p~~~~~~~~~~g~~~~~~~~~~G~~~~  393 (469)
                      |+|||+|||+..+.          .+..|..+|+.+|+||++...  ..|..+|+   ..|+++.      +..+|.+..
T Consensus       381 p~IYAaGDv~~~~~----------l~~~A~~~g~~~a~~i~g~~~~~~~~~~vp~---~vft~Pe------ia~VGlte~  441 (558)
T PLN02546        381 PSIWAVGDVTDRIN----------LTPVALMEGGALAKTLFGNEPTKPDYRAVPS---AVFSQPP------IGQVGLTEE  441 (558)
T ss_pred             CCEEEeeccCCCcc----------cHHHHHHHHHHHHHHHcCCCCCcCCCCCCCE---EEeCCch------HhhccCCHH
Confidence            99999999997532          345699999999999997542  23456674   4565532      222333221


Q ss_pred             -------cEE------------EEccCCCcEEEEEEe--CCEEEEEEeecCChHHhHH-HHHHHhCCCCCCh--hhhcCC
Q 012165          394 -------ETI------------EIGNFDPKIATFWID--SGKLKGVLVESGSPEEFQL-LPTLARSQPFVDK--AKLQQA  449 (469)
Q Consensus       394 -------~~~------------~~~~~~~~~~~~~~~--~~~l~g~~~~~~~~~~~~~-~~~~~~~~~~~~~--~~~~~~  449 (469)
                             ++.            ..+.....|.|++++  +++|+|+++++.++.++.. +..+|+.+.+++.  ..++.|
T Consensus       442 eA~~~g~~~~~~~~~~~~~~~~~~~~~~~g~~Klv~d~~t~~ILGa~ivG~~a~elI~~~a~ai~~~~t~~dl~~~~~~h  521 (558)
T PLN02546        442 QAIEEYGDVDVFTANFRPLKATLSGLPDRVFMKLIVCAKTNKVLGVHMCGEDAPEIIQGFAVAVKAGLTKADFDATVGIH  521 (558)
T ss_pred             HHHHcCCCeEEEEEecccchhhhhCCCCcEEEEEEEECCCCEEEEEEEECCCHHHHHHHHHHHHHCCCCHHHHhhcccCC
Confidence                   000            011112236777764  5999999998888766554 4556788888763  334789


Q ss_pred             CcHHHHHHHHH
Q 012165          450 SSVEEALEIAR  460 (469)
Q Consensus       450 ~~~~~~~~~~~  460 (469)
                      |++.|.+..+.
T Consensus       522 PT~~E~~~~~~  532 (558)
T PLN02546        522 PTAAEEFVTMR  532 (558)
T ss_pred             CChHHHHHHHh
Confidence            99999998886

>PRK07818 dihydrolipoamide dehydrogenase; Reviewed

Probab=100.00  E-value=4.8e-38  Score=320.60  Aligned_cols=382  Identities=24%  Similarity=0.331  Sum_probs=244.2

Q ss_pred             CCCcEEEEcCcHHHHHHHHHHHHcCCCCCcEEEEcCCCCCC--CCCCCC-cccccCCCC------CCCCCCCCCccccCC
Q 012165           50 ENREFVIVGGGNAAGYAARTFVEHGMADGRLCIVSKEAYAP--YERPAL-TKGYLFPLD------KKPARLPGFHTCVGS  120 (469)
Q Consensus        50 ~~~~vvIIGgG~AGl~aA~~L~~~g~~~~~V~vie~~~~~~--~~~~~l-~~~~~~~~~------~~~~~~~~~~~~~~~  120 (469)
                      .++||+||||||||++||.+|++.|.   +|+|||++..-+  .++... ++.++....      .....+ +.......
T Consensus         3 ~~~DvvIIG~GpaG~~AA~~aa~~G~---~V~lie~~~~GG~c~~~gciPsk~l~~~~~~~~~~~~~~~~~-gi~~~~~~   78 (466)
T PRK07818          3 THYDVVVLGAGPGGYVAAIRAAQLGL---KTAVVEKKYWGGVCLNVGCIPSKALLRNAELAHIFTKEAKTF-GISGEVTF   78 (466)
T ss_pred             CcCCEEEECCCHHHHHHHHHHHhCCC---eEEEEecCCCCCceecCCccccHHHHhhHHHHHHHHHHHHhc-CCCcCccc
Confidence            35899999999999999999999987   799999863211  011001 111110000      000000 00000000


Q ss_pred             CC--------------CCCCHhHHHHCCcEEEeCCcEEEEeCCCcEEEeCCC--eEEEeccEEeccCCCCCcCCCCCCCC
Q 012165          121 GG--------------ERQTPEWYKEKGIEMIYQDPVTSIDIEKQTLITNSG--KLLKYGSLIVATGCTASRFPEKIGGY  184 (469)
Q Consensus       121 ~~--------------~~~~~~~~~~~~i~~~~~~~v~~id~~~~~v~~~~g--~~~~yd~lVlAtG~~~~~~~~~~g~~  184 (469)
                      ++              .......++..+++.+.+ +...++.....|...+|  .+++||+||||||++|+.+|   +.+
T Consensus        79 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~g-~~~~~~~~~v~v~~~~g~~~~~~~d~lViATGs~p~~~p---g~~  154 (466)
T PRK07818         79 DYGAAFDRSRKVAEGRVKGVHFLMKKNKITEIHG-YGTFTDANTLEVDLNDGGTETVTFDNAIIATGSSTRLLP---GTS  154 (466)
T ss_pred             CHHHHHHHHHHHHHHHHHHHHHHHHhCCCEEEEE-EEEEcCCCEEEEEecCCCeeEEEcCEEEEeCCCCCCCCC---CCC
Confidence            00              000011123346776654 33333333333444454  36999999999999987533   332


Q ss_pred             c-CcEEEecCHHHHHHHHHhhhcCCeEEEEcCChHHHHHHHHHHhCCCeEe------------------eeHHHHHHcCc
Q 012165          185 L-PGVHYIRDVADADALISSLEKAKKVVVVGGGYIGMEVAAAAVGWKLDTT------------------RYEQLYQQNGV  245 (469)
Q Consensus       185 ~-~~v~~~~~~~~~~~~~~~~~~~~~vvVvG~G~~g~e~A~~l~~~g~~v~------------------~~~~~l~~~gV  245 (469)
                      . ..+++.   .+  .+ .....+++++|||+|++|+|+|..|+++|.+|+                  .+.+.|++.||
T Consensus       155 ~~~~v~~~---~~--~~-~~~~~~~~vvVIGgG~ig~E~A~~l~~~G~~Vtlv~~~~~~l~~~d~~~~~~l~~~l~~~gV  228 (466)
T PRK07818        155 LSENVVTY---EE--QI-LSRELPKSIVIAGAGAIGMEFAYVLKNYGVDVTIVEFLDRALPNEDAEVSKEIAKQYKKLGV  228 (466)
T ss_pred             CCCcEEch---HH--Hh-ccccCCCeEEEECCcHHHHHHHHHHHHcCCeEEEEecCCCcCCccCHHHHHHHHHHHHHCCC
Confidence            2 223332   11  11 112357899999999999999999999999987                  34567888999


Q ss_pred             EEEcCCeEEEEEeCCCCcEEEEEcC--CC--CEEeCCEEEEccCCccCCch--hhhcCCccc-CCCEEeCCCCCCCCCce
Q 012165          246 KFVKGASIKNLEAGSDGRVAAVKLE--DG--STIDADTIVIGIGAKPTVSP--FERVGLNSS-VGGIQVDGQFRTRMPGI  318 (469)
Q Consensus       246 ~~~~~~~v~~i~~~~~~~v~~v~~~--~g--~~i~~D~vi~a~G~~p~~~~--~~~~gl~~~-~g~i~Vd~~~~t~~~~V  318 (469)
                      ++++++++++++.+ ++.+ .+.+.  +|  +++++|.||+++|++||+++  +++.|+..+ +|+|.||+++||+.|+|
T Consensus       229 ~i~~~~~v~~i~~~-~~~~-~v~~~~~~g~~~~i~~D~vi~a~G~~pn~~~l~l~~~g~~~~~~g~i~vd~~~~Ts~p~I  306 (466)
T PRK07818        229 KILTGTKVESIDDN-GSKV-TVTVSKKDGKAQELEADKVLQAIGFAPRVEGYGLEKTGVALTDRGAIAIDDYMRTNVPHI  306 (466)
T ss_pred             EEEECCEEEEEEEe-CCeE-EEEEEecCCCeEEEEeCEEEECcCcccCCCCCCchhcCcEECCCCcEeeCCCcccCCCCE
Confidence            99999999999853 3332 34443  56  47999999999999999885  678888764 57799999999999999


Q ss_pred             EEeccccccCCccCCcccccchHHHHHHHHHHHHHHHhcCCCC---CCCCCCceeeecccccCCCcceeeEEeecCCC--
Q 012165          319 FAIGDVAAFPLKMYDRTARVEHVDHARQSAQHCIKALLSAQTH---TYDYLPYFYSRVFEYEGSPRKVWWQFFGDNVG--  393 (469)
Q Consensus       319 fa~GD~a~~~~~~~~~~~~~~~~~~A~~~a~~~a~~i~~~~~~---~~~~~p~~~~~~~~~~g~~~~~~~~~~G~~~~--  393 (469)
                      ||+|||+..+.          ....|..+|+.+|.||++....   .+..+|.   ..|..+.      +..+|.+..  
T Consensus       307 yAiGD~~~~~~----------l~~~A~~~g~~aa~~i~g~~~~~~~~~~~~p~---~~~~~p~------~a~vGlte~~a  367 (466)
T PRK07818        307 YAIGDVTAKLQ----------LAHVAEAQGVVAAETIAGAETLELGDYRMMPR---ATFCQPQ------VASFGLTEEQA  367 (466)
T ss_pred             EEEeecCCCcc----------cHhHHHHHHHHHHHHHcCCCCCccCccCCCCe---EEECCCC------eEEEeCCHHHH
Confidence            99999986432          4456999999999999974322   3445664   2232211      444554321  


Q ss_pred             -----cEE--EE--c--------cCCCcEEEEEEe--CCEEEEEEeecCChHHhHH-HHHHHhCCCCCCh--hhhcCCCc
Q 012165          394 -----ETI--EI--G--------NFDPKIATFWID--SGKLKGVLVESGSPEEFQL-LPTLARSQPFVDK--AKLQQASS  451 (469)
Q Consensus       394 -----~~~--~~--~--------~~~~~~~~~~~~--~~~l~g~~~~~~~~~~~~~-~~~~~~~~~~~~~--~~~~~~~~  451 (469)
                           +..  ..  .        .....|.|+.++  +++|+|+++++.++.++.. +..+|+.+.+++.  ..++.||+
T Consensus       368 ~~~g~~~~~~~~~~~~~~~~~~~~~~~g~~Klv~~~~~~~ilG~~~vg~~a~e~i~~~~~ai~~~~t~~~l~~~~~~hPt  447 (466)
T PRK07818        368 REEGYDVKVAKFPFTANGKAHGLGDPTGFVKLVADAKYGELLGGHLIGPDVSELLPELTLAQKWDLTAEELARNVHTHPT  447 (466)
T ss_pred             HhCCCcEEEEEEECCccchhhhcCCCCeEEEEEEECCCCeEEEEEEECCCHHHHHHHHHHHHHcCCCHHHHhcCccCCCc
Confidence                 110  00  0        001236677664  5999999987877766554 4556788877762  23467999


Q ss_pred             HHHHHHHHHhcCCcc
Q 012165          452 VEEALEIARAALPVE  466 (469)
Q Consensus       452 ~~~~~~~~~~~~~~~  466 (469)
                      +.|+++.|++.+..+
T Consensus       448 ~~e~~~~~~~~~~~~  462 (466)
T PRK07818        448 LSEALKEAFHGLAGH  462 (466)
T ss_pred             hHHHHHHHHHHhhcC
Confidence            999999999877654

>TIGR02053 MerA mercuric reductase

Probab=100.00  E-value=4.2e-38  Score=321.16  Aligned_cols=380  Identities=21%  Similarity=0.257  Sum_probs=252.4

Q ss_pred             CcEEEEcCcHHHHHHHHHHHHcCCCCCcEEEEcCCCCCCC--CCCCC-ccccc---------CCC------CCCCCCCCC
Q 012165           52 REFVIVGGGNAAGYAARTFVEHGMADGRLCIVSKEAYAPY--ERPAL-TKGYL---------FPL------DKKPARLPG  113 (469)
Q Consensus        52 ~~vvIIGgG~AGl~aA~~L~~~g~~~~~V~vie~~~~~~~--~~~~l-~~~~~---------~~~------~~~~~~~~~  113 (469)
                      +||+||||||||++||..++++|.   +|+|||+++.-+-  ++-.. +|.++         ...      .....++..
T Consensus         1 yDvvVIGaGpaG~~aA~~aa~~g~---~v~lie~~~~GG~c~n~gciPsk~l~~~~~~~~~~~~~~~g~~~~~~~~~~~~   77 (463)
T TIGR02053         1 YDLVIIGSGAAAFAAAIKAAELGA---SVAMVERGPLGGTCVNVGCVPSKMLLRAAEVAHYARKPPFGGLAATVAVDFGE   77 (463)
T ss_pred             CCEEEECCCHHHHHHHHHHHHCCC---eEEEEeCCcccCCeeeecEEccHHHHHHHHHHHHhhccCcccccCCCccCHHH
Confidence            699999999999999999999987   7999998753211  00000 11100         000      000000000


Q ss_pred             Cccc---cCCCC-CCCCHhHHHHCCcEEEeCCcEEEEeCCCcEEEeCCCe-EEEeccEEeccCCCCCcCCCCCCCCcCcE
Q 012165          114 FHTC---VGSGG-ERQTPEWYKEKGIEMIYQDPVTSIDIEKQTLITNSGK-LLKYGSLIVATGCTASRFPEKIGGYLPGV  188 (469)
Q Consensus       114 ~~~~---~~~~~-~~~~~~~~~~~~i~~~~~~~v~~id~~~~~v~~~~g~-~~~yd~lVlAtG~~~~~~~~~~g~~~~~v  188 (469)
                      ....   .-... .....+.+++.+++++.+ ++..++  .++|.+.++. .+.||+||||||++|. .|.++|.+..++
T Consensus        78 ~~~~~~~~~~~~~~~~~~~~l~~~gv~~~~g-~~~~~~--~~~v~v~~g~~~~~~~~lIiATGs~p~-~p~i~G~~~~~~  153 (463)
T TIGR02053        78 LLEGKREVVEELRHEKYEDVLSSYGVDYLRG-RARFKD--PKTVKVDLGREVRGAKRFLIATGARPA-IPPIPGLKEAGY  153 (463)
T ss_pred             HHHHHHHHHHHHhhhhHHHHHHhCCcEEEEE-EEEEcc--CCEEEEcCCeEEEEeCEEEEcCCCCCC-CCCCCCcccCce
Confidence            0000   00000 001234567789999886 554443  5778887754 6899999999999986 566666544444


Q ss_pred             EEecCHHHHHHHHHhhhcCCeEEEEcCChHHHHHHHHHHhCCCeEe------------------eeHHHHHHcCcEEEcC
Q 012165          189 HYIRDVADADALISSLEKAKKVVVVGGGYIGMEVAAAAVGWKLDTT------------------RYEQLYQQNGVKFVKG  250 (469)
Q Consensus       189 ~~~~~~~~~~~~~~~~~~~~~vvVvG~G~~g~e~A~~l~~~g~~v~------------------~~~~~l~~~gV~~~~~  250 (469)
                      ++..      .+......+++++|||+|.+|+|+|..|.++|.+|+                  .+.+.+++.||+++++
T Consensus       154 ~~~~------~~~~~~~~~~~vvIIGgG~~g~E~A~~l~~~g~~Vtli~~~~~~l~~~d~~~~~~l~~~l~~~gV~i~~~  227 (463)
T TIGR02053       154 LTSE------EALALDRIPESLAVIGGGAIGVELAQAFARLGSEVTILQRSDRLLPREEPEISAAVEEALAEEGIEVVTS  227 (463)
T ss_pred             ECch------hhhCcccCCCeEEEECCCHHHHHHHHHHHHcCCcEEEEEcCCcCCCccCHHHHHHHHHHHHHcCCEEEcC
Confidence            3322      222222346899999999999999999999999988                  3456788899999999


Q ss_pred             CeEEEEEeCCCCcEEEEEcC---CCCEEeCCEEEEccCCccCCc-h-hhhcCCccc-CCCEEeCCCCCCCCCceEEeccc
Q 012165          251 ASIKNLEAGSDGRVAAVKLE---DGSTIDADTIVIGIGAKPTVS-P-FERVGLNSS-VGGIQVDGQFRTRMPGIFAIGDV  324 (469)
Q Consensus       251 ~~v~~i~~~~~~~v~~v~~~---~g~~i~~D~vi~a~G~~p~~~-~-~~~~gl~~~-~g~i~Vd~~~~t~~~~Vfa~GD~  324 (469)
                      ++|++++.++++.  .+.+.   +++++++|.||+|+|++|+++ + ++..+++.+ +|+|.||++|||+.|+|||+|||
T Consensus       228 ~~V~~i~~~~~~~--~v~~~~~~~~~~i~~D~ViiA~G~~p~~~~l~l~~~g~~~~~~G~i~vd~~~~Ts~~~VyAiGD~  305 (463)
T TIGR02053       228 AQVKAVSVRGGGK--IITVEKPGGQGEVEADELLVATGRRPNTDGLGLEKAGVKLDERGGILVDETLRTSNPGIYAAGDV  305 (463)
T ss_pred             cEEEEEEEcCCEE--EEEEEeCCCceEEEeCEEEEeECCCcCCCCCCccccCCEECCCCcEeECCCccCCCCCEEEeeec
Confidence            9999998643322  33332   236799999999999999998 4 677888765 57799999999999999999999


Q ss_pred             cccCCccCCcccccchHHHHHHHHHHHHHHHhcCCCCCC--CCCCceeeecccccCCCcceeeEEeecCCC-------cE
Q 012165          325 AAFPLKMYDRTARVEHVDHARQSAQHCIKALLSAQTHTY--DYLPYFYSRVFEYEGSPRKVWWQFFGDNVG-------ET  395 (469)
Q Consensus       325 a~~~~~~~~~~~~~~~~~~A~~~a~~~a~~i~~~~~~~~--~~~p~~~~~~~~~~g~~~~~~~~~~G~~~~-------~~  395 (469)
                      +..+.          .+..|..+|+.+|.||++.....+  ..+|+  ...+..+       +..+|.+..       +.
T Consensus       306 ~~~~~----------~~~~A~~~g~~aa~ni~~~~~~~~~~~~~p~--~~~~~p~-------~a~vGlte~~a~~~g~~~  366 (463)
T TIGR02053       306 TGGLQ----------LEYVAAKEGVVAAENALGGANAKLDLLVIPR--VVFTDPA-------VASVGLTEAEAQKAGIEC  366 (463)
T ss_pred             CCCcc----------cHhHHHHHHHHHHHHhcCCCCCccCcCCCCe--EEeccCc-------eEEEeCCHHHHHhcCCCe
Confidence            97532          345699999999999986423333  34453  2222221       444554321       11


Q ss_pred             EE--E--c--------cCCCcEEEEEEe--CCEEEEEEeecCChHHhHHH-HHHHhCCCCCCh-hh-hcCCCcHHHHHHH
Q 012165          396 IE--I--G--------NFDPKIATFWID--SGKLKGVLVESGSPEEFQLL-PTLARSQPFVDK-AK-LQQASSVEEALEI  458 (469)
Q Consensus       396 ~~--~--~--------~~~~~~~~~~~~--~~~l~g~~~~~~~~~~~~~~-~~~~~~~~~~~~-~~-~~~~~~~~~~~~~  458 (469)
                      ..  .  .        .....+.|+.++  +++|+|+++++.++.++... ..+|+.+.+++. .. ...||++.|.+..
T Consensus       367 ~~~~~~~~~~~~~~~~~~~~g~~kli~d~~~~~ilG~~~~g~~a~e~i~~~~~ai~~~~t~~~l~~~~~~~pt~~e~~~~  446 (463)
T TIGR02053       367 DCRTLPLTNVPRARINRDTRGFIKLVAEPGTGKVLGVQVVAPEAAEVINEAALAIRAGMTVDDLIDTLHPFPTMAEGLKL  446 (463)
T ss_pred             EEEEEecccchHHHhcCCCcEEEEEEEECCCCEEEEEEEECCCHHHHHHHHHHHHHCCCCHHHHhhCcccCCChHHHHHH
Confidence            00  0  0        011236777764  59999999988887665554 456777777662 22 3578999999999


Q ss_pred             HHhcCCc
Q 012165          459 ARAALPV  465 (469)
Q Consensus       459 ~~~~~~~  465 (469)
                      |++.+.+
T Consensus       447 a~~~~~~  453 (463)
T TIGR02053       447 AAQTFYR  453 (463)
T ss_pred             HHHHhhc
Confidence            9987643

This model represents the mercuric reductase found in the mer operon for the detoxification of mercury compounds. MerA is a FAD-containing flavoprotein which reduces Hg(II) to Hg(0) utilizing NADPH.

>PRK13748 putative mercuric reductase; Provisional

Probab=100.00  E-value=9.6e-38  Score=326.19  Aligned_cols=382  Identities=18%  Similarity=0.255  Sum_probs=253.3

Q ss_pred             CCCcEEEEcCcHHHHHHHHHHHHcCCCCCcEEEEcCCCCCCCC---CCCC-cccccCC------CCCCCC--CC----CC
Q 012165           50 ENREFVIVGGGNAAGYAARTFVEHGMADGRLCIVSKEAYAPYE---RPAL-TKGYLFP------LDKKPA--RL----PG  113 (469)
Q Consensus        50 ~~~~vvIIGgG~AGl~aA~~L~~~g~~~~~V~vie~~~~~~~~---~~~l-~~~~~~~------~~~~~~--~~----~~  113 (469)
                      ..+||+||||||||++||..|++.|.   +|+|||++. ++..   +... +|.++..      ......  .+    +.
T Consensus        97 ~~~DvvVIG~GpaG~~aA~~~~~~G~---~v~lie~~~-~GG~c~n~gciPsk~l~~~~~~~~~~~~~~~~~g~~~~~~~  172 (561)
T PRK13748         97 RPLHVAVIGSGGAAMAAALKAVEQGA---RVTLIERGT-IGGTCVNVGCVPSKIMIRAAHIAHLRRESPFDGGIAATVPT  172 (561)
T ss_pred             CCCCEEEECcCHHHHHHHHHHHhCCC---eEEEEecCc-ceeeccccCccccHHHHHHHHHHHHHhcccccCCccCCCCc
Confidence            46999999999999999999999987   799999873 2211   1111 1111000      000000  00    00


Q ss_pred             C--ccccC------CCCC-CCCHhHHHHC-CcEEEeCCcEEEEeCCCcEEEeCCCe--EEEeccEEeccCCCCCcCCCCC
Q 012165          114 F--HTCVG------SGGE-RQTPEWYKEK-GIEMIYQDPVTSIDIEKQTLITNSGK--LLKYGSLIVATGCTASRFPEKI  181 (469)
Q Consensus       114 ~--~~~~~------~~~~-~~~~~~~~~~-~i~~~~~~~v~~id~~~~~v~~~~g~--~~~yd~lVlAtG~~~~~~~~~~  181 (469)
                      .  .....      .... ......+++. +++++.+ ++..++.....|.+.+|+  ++.||+||||||++|. .|+++
T Consensus       173 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~g-~~~~~~~~~~~v~~~~g~~~~~~~d~lviAtGs~p~-~p~i~  250 (561)
T PRK13748        173 IDRSRLLAQQQARVDELRHAKYEGILDGNPAITVLHG-EARFKDDQTLIVRLNDGGERVVAFDRCLIATGASPA-VPPIP  250 (561)
T ss_pred             cCHHHHHHHHHHHHHHHhcccHHHHHhccCCeEEEEE-EEEEecCCEEEEEeCCCceEEEEcCEEEEcCCCCCC-CCCCC
Confidence            0  00000      0000 0111223444 7899886 777788776677776663  6999999999999987 56666


Q ss_pred             CCCcCcEEEecCHHHHHHHHHhhhcCCeEEEEcCChHHHHHHHHHHhCCCeEe-----------------eeHHHHHHcC
Q 012165          182 GGYLPGVHYIRDVADADALISSLEKAKKVVVVGGGYIGMEVAAAAVGWKLDTT-----------------RYEQLYQQNG  244 (469)
Q Consensus       182 g~~~~~v~~~~~~~~~~~~~~~~~~~~~vvVvG~G~~g~e~A~~l~~~g~~v~-----------------~~~~~l~~~g  244 (469)
                      |.+...  ++..    .........+++++|||+|++|+|+|..|.++|.+|+                 .+.+.+++.|
T Consensus       251 g~~~~~--~~~~----~~~~~~~~~~~~vvViGgG~ig~E~A~~l~~~g~~Vtli~~~~~l~~~d~~~~~~l~~~l~~~g  324 (561)
T PRK13748        251 GLKETP--YWTS----TEALVSDTIPERLAVIGSSVVALELAQAFARLGSKVTILARSTLFFREDPAIGEAVTAAFRAEG  324 (561)
T ss_pred             CCCccc--eEcc----HHHhhcccCCCeEEEECCCHHHHHHHHHHHHcCCEEEEEecCccccccCHHHHHHHHHHHHHCC
Confidence            643211  2211    1112222457899999999999999999999999988                 3456788999


Q ss_pred             cEEEcCCeEEEEEeCCCCcEEEEEcCCCCEEeCCEEEEccCCccCCch--hhhcCCccc-CCCEEeCCCCCCCCCceEEe
Q 012165          245 VKFVKGASIKNLEAGSDGRVAAVKLEDGSTIDADTIVIGIGAKPTVSP--FERVGLNSS-VGGIQVDGQFRTRMPGIFAI  321 (469)
Q Consensus       245 V~~~~~~~v~~i~~~~~~~v~~v~~~~g~~i~~D~vi~a~G~~p~~~~--~~~~gl~~~-~g~i~Vd~~~~t~~~~Vfa~  321 (469)
                      |++++++.+++++.. ++.+ .+.+.++ ++++|.||+++|++||+.+  +++++++.+ +|+|.||+++||++|||||+
T Consensus       325 I~i~~~~~v~~i~~~-~~~~-~v~~~~~-~i~~D~vi~a~G~~pn~~~l~l~~~g~~~~~~g~i~vd~~~~Ts~~~IyA~  401 (561)
T PRK13748        325 IEVLEHTQASQVAHV-DGEF-VLTTGHG-ELRADKLLVATGRAPNTRSLALDAAGVTVNAQGAIVIDQGMRTSVPHIYAA  401 (561)
T ss_pred             CEEEcCCEEEEEEec-CCEE-EEEecCC-eEEeCEEEEccCCCcCCCCcCchhcCceECCCCCEeECCCcccCCCCEEEe
Confidence            999999999999854 3333 3555555 6999999999999999986  578888875 57799999999999999999


Q ss_pred             ccccccCCccCCcccccchHHHHHHHHHHHHHHHhcCCC-CCCCCCCceeeecccccCCCcceeeEEeecCCC-------
Q 012165          322 GDVAAFPLKMYDRTARVEHVDHARQSAQHCIKALLSAQT-HTYDYLPYFYSRVFEYEGSPRKVWWQFFGDNVG-------  393 (469)
Q Consensus       322 GD~a~~~~~~~~~~~~~~~~~~A~~~a~~~a~~i~~~~~-~~~~~~p~~~~~~~~~~g~~~~~~~~~~G~~~~-------  393 (469)
                      |||+..+.          ....|..+|+.+|.||++... .++...|.  ...+..+       +..+|....       
T Consensus       402 GD~~~~~~----------~~~~A~~~g~~aa~~i~g~~~~~~~~~~p~--~~~~~p~-------~a~vGlte~~a~~~g~  462 (561)
T PRK13748        402 GDCTDQPQ----------FVYVAAAAGTRAAINMTGGDAALDLTAMPA--VVFTDPQ-------VATVGYSEAEAHHDGI  462 (561)
T ss_pred             eecCCCcc----------chhHHHHHHHHHHHHHcCCCcccCCCCCCe--EEEccCC-------ceeeeCCHHHHHHcCC
Confidence            99997653          233588899999999986432 22344553  2222221       344554321       


Q ss_pred             cE--EEE----------ccCCCcEEEEEEe--CCEEEEEEeecCChHHhHH-HHHHHhCCCCCCh--hhhcCCCcHHHHH
Q 012165          394 ET--IEI----------GNFDPKIATFWID--SGKLKGVLVESGSPEEFQL-LPTLARSQPFVDK--AKLQQASSVEEAL  456 (469)
Q Consensus       394 ~~--~~~----------~~~~~~~~~~~~~--~~~l~g~~~~~~~~~~~~~-~~~~~~~~~~~~~--~~~~~~~~~~~~~  456 (469)
                      +.  ...          ......|.|++++  +++|+|+++++.++.++.. +..+|+.+.+++.  ..+..|||+.|.+
T Consensus       463 ~~~~~~~~~~~~~~~~~~~~~~g~~kli~d~~~~~ilG~~~~g~~a~e~i~~~~~ai~~~~t~~~l~~~~~~~Pt~~e~~  542 (561)
T PRK13748        463 ETDSRTLTLDNVPRALANFDTRGFIKLVIEEGSGRLIGVQAVAPEAGELIQTAALAIRNRMTVQELADQLFPYLTMVEGL  542 (561)
T ss_pred             CeEEEEEecccCchhhhcCCCCeEEEEEEECCCCEEEEEEEECCCHHHHHHHHHHHHHcCCCHHHHhcccccCCchHHHH
Confidence            11  000          0112347777775  6999999987777765444 4556788887763  2246799999999


Q ss_pred             HHHHhcCCc
Q 012165          457 EIARAALPV  465 (469)
Q Consensus       457 ~~~~~~~~~  465 (469)
                      +.|++.+.+
T Consensus       543 ~~~~~~~~~  551 (561)
T PRK13748        543 KLAAQTFNK  551 (561)
T ss_pred             HHHHHHhhc
Confidence            999976543

>KOG1346 consensus Programmed cell death 8 (apoptosis-inducing factor) [Signal transduction mechanisms]

Probab=100.00  E-value=1.4e-39  Score=302.41  Aligned_cols=387  Identities=24%  Similarity=0.373  Sum_probs=293.3

Q ss_pred             CCCCcEEEEcCcHHHHHHHHHHHHcCCCCCcEEEEcCCCCCCCCCCCCcccccCCCCCCCCCCCCCccccCCCCC--CCC
Q 012165           49 NENREFVIVGGGNAAGYAARTFVEHGMADGRLCIVSKEAYAPYERPALTKGYLFPLDKKPARLPGFHTCVGSGGE--RQT  126 (469)
Q Consensus        49 ~~~~~vvIIGgG~AGl~aA~~L~~~g~~~~~V~vie~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~  126 (469)
                      .++...+|||+|.+..+++..++.... ..++.+|+.++..||.||+||+.+|+..+.....-..|..+.+....  ...
T Consensus       176 p~hvp~liigggtaAfaa~rai~s~da-~A~vl~iseepelPYmRPPLSKELW~~~dpn~~k~lrfkqwsGkeRsiffep  254 (659)
T KOG1346|consen  176 PKHVPYLIIGGGTAAFAAFRAIKSNDA-TAKVLMISEEPELPYMRPPLSKELWWYGDPNSAKKLRFKQWSGKERSIFFEP  254 (659)
T ss_pred             cccCceeEEcCCchhhhcccccccCCC-CceEEeeccCccCcccCCCcchhceecCCCChhhheeecccCCccceeEecC
Confidence            345679999999999999888887764 78999999999999999999999887655444333334444443221  112


Q ss_pred             HhHH---------HHCCcEEEeCCcEEEEeCCCcEEEeCCCeEEEeccEEeccCCCCCcCCCCCCC---CcCcEEEecCH
Q 012165          127 PEWY---------KEKGIEMIYQDPVTSIDIEKQTLITNSGKLLKYGSLIVATGCTASRFPEKIGG---YLPGVHYIRDV  194 (469)
Q Consensus       127 ~~~~---------~~~~i~~~~~~~v~~id~~~~~v~~~~g~~~~yd~lVlAtG~~~~~~~~~~g~---~~~~v~~~~~~  194 (469)
                      ..|+         ..-||.+..|..|..||.+++.|.+.||.+|.||+++||||.+|+.++.+...   -...+.+++.+
T Consensus       255 d~FfvspeDLp~~~nGGvAvl~G~kvvkid~~d~~V~LnDG~~I~YdkcLIATG~~Pk~l~~~~~A~~evk~kit~fr~p  334 (659)
T KOG1346|consen  255 DGFFVSPEDLPKAVNGGVAVLRGRKVVKIDEEDKKVILNDGTTIGYDKCLIATGVRPKKLQVFEEASEEVKQKITYFRYP  334 (659)
T ss_pred             CcceeChhHCcccccCceEEEeccceEEeecccCeEEecCCcEeehhheeeecCcCcccchhhhhcCHHhhhheeEEecc
Confidence            2222         23488899999999999999999999999999999999999999887754322   13457888999


Q ss_pred             HHHHHHHHhhhcCCeEEEEcCChHHHHHHHHHHhC----CCeEe-------------------eeHHHHHHcCcEEEcCC
Q 012165          195 ADADALISSLEKAKKVVVVGGGYIGMEVAAAAVGW----KLDTT-------------------RYEQLYQQNGVKFVKGA  251 (469)
Q Consensus       195 ~~~~~~~~~~~~~~~vvVvG~G~~g~e~A~~l~~~----g~~v~-------------------~~~~~l~~~gV~~~~~~  251 (469)
                      .|.+++...+...++|.|||+|++|.|+|..|.+.    |.+|.                   +-.+.+++.||.++.+.
T Consensus       335 ~DF~rlek~~aek~siTIiGnGflgSELacsl~rk~r~~g~eV~QvF~Ek~nm~kiLPeyls~wt~ekir~~GV~V~pna  414 (659)
T KOG1346|consen  335 ADFKRLEKGLAEKQSITIIGNGFLGSELACSLKRKYRNEGVEVHQVFEEKYNMEKILPEYLSQWTIEKIRKGGVDVRPNA  414 (659)
T ss_pred             hHHHHHHHhhhhcceEEEEcCcchhhhHHHHHHHhhhccCcEEEEeecccCChhhhhHHHHHHHHHHHHHhcCceeccch
Confidence            99999888888889999999999999999999764    44554                   33566789999999999


Q ss_pred             eEEEEEeCCCCcEEEEEcCCCCEEeCCEEEEccCCccCCchhhhcCCccc--CCCEEeCCCCCCCCCceEEeccccccCC
Q 012165          252 SIKNLEAGSDGRVAAVKLEDGSTIDADTIVIGIGAKPTVSPFERVGLNSS--VGGIQVDGQFRTRMPGIFAIGDVAAFPL  329 (469)
Q Consensus       252 ~v~~i~~~~~~~v~~v~~~~g~~i~~D~vi~a~G~~p~~~~~~~~gl~~~--~g~i~Vd~~~~t~~~~Vfa~GD~a~~~~  329 (469)
                      .|..+... .+.+ .+.++||.++..|+|++|+|-.||+++++..||+.|  -||+.||..++.. .|||++||++.+.+
T Consensus       415 ~v~sv~~~-~~nl-~lkL~dG~~l~tD~vVvavG~ePN~ela~~sgLeiD~~lGGfrvnaeL~ar-~NvwvAGdaacF~D  491 (659)
T KOG1346|consen  415 KVESVRKC-CKNL-VLKLSDGSELRTDLVVVAVGEEPNSELAEASGLEIDEKLGGFRVNAELKAR-ENVWVAGDAACFED  491 (659)
T ss_pred             hhhhhhhh-ccce-EEEecCCCeeeeeeEEEEecCCCchhhcccccceeecccCcEEeeheeecc-cceeeecchhhhhc
Confidence            99998754 3333 489999999999999999999999999999999876  4899999988864 89999999999998


Q ss_pred             ccCCcccccchHHHHHHHHHHHHHHHhcCCCCCCCCCCceeeeccc---ccCCCc-ceeeEEee---cCC----------
Q 012165          330 KMYDRTARVEHVDHARQSAQHCIKALLSAQTHTYDYLPYFYSRVFE---YEGSPR-KVWWQFFG---DNV----------  392 (469)
Q Consensus       330 ~~~~~~~~~~~~~~A~~~a~~~a~~i~~~~~~~~~~~p~~~~~~~~---~~g~~~-~~~~~~~G---~~~----------  392 (469)
                      ...|+. |++||.+|...|+.+.+||.+ ...+|....+||++.-.   |.++.. ...+..+|   .+.          
T Consensus       492 ~~LGrR-RVehhdhavvSGRLAGENMtg-Aakpy~hqsmFWsdlgP~igyeaIGlvDSSLpTVgVfA~p~s~~~~~~~se  569 (659)
T KOG1346|consen  492 GVLGRR-RVEHHDHAVVSGRLAGENMTG-AAKPYKHQSMFWSDLGPEIGYEAIGLVDSSLPTVGVFALPSSATRVDQLSE  569 (659)
T ss_pred             ccccce-eccccccceeeceeccccccc-ccCCccccceeeeccCcccccceeeecccCCCcceeeeccccccchhhhhh
Confidence            887764 588999999999999999985 56789988899997432   211100 00011111   110          


Q ss_pred             --C----cE---------EE-------------EccCCCcEEEEEEeCCEEEEEEeecCChHHhHHHHHHHhCCCCCC
Q 012165          393 --G----ET---------IE-------------IGNFDPKIATFWIDSGKLKGVLVESGSPEEFQLLPTLARSQPFVD  442 (469)
Q Consensus       393 --~----~~---------~~-------------~~~~~~~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~~~~  442 (469)
                        +    +.         ..             .++-..|-+.||++|++|||+++ .+--..+...+..|.++...+
T Consensus       570 ~sdt~v~~~s~s~s~ss~~~~~~s~~~v~~~P~e~~~ygKgViFYl~d~~iVGilL-wN~Fnr~~~AR~II~d~kk~d  646 (659)
T KOG1346|consen  570 SSDTDVPETSTSSSQSSKSDAGASQDGVTCDPDEAGNYGKGVIFYLKDDKIVGILL-WNLFNRIGLARTIINDNKKYD  646 (659)
T ss_pred             ccCCCCccccccccccccccCCcCCCCCccCcccccccCceEEEEecCCcEEEEEe-hhhhccchhhHHHhccccchh
Confidence              0    00         00             00001245789999999999998 454457777888887766543

>PRK07846 mycothione reductase; Reviewed

Probab=100.00  E-value=8.8e-37  Score=308.89  Aligned_cols=376  Identities=20%  Similarity=0.265  Sum_probs=249.3

Q ss_pred             CCcEEEEcCcHHHHHHHHHHHHcCCCCCcEEEEcCCCCCC--CCC-CCCccccc--------------CCC--CCCCCCC
Q 012165           51 NREFVIVGGGNAAGYAARTFVEHGMADGRLCIVSKEAYAP--YER-PALTKGYL--------------FPL--DKKPARL  111 (469)
Q Consensus        51 ~~~vvIIGgG~AGl~aA~~L~~~g~~~~~V~vie~~~~~~--~~~-~~l~~~~~--------------~~~--~~~~~~~  111 (469)
                      ++|++|||||++|.+||..  ..|.   +|+|||++..-+  -++ +--+|.++              +..  .....++
T Consensus         1 ~yD~vVIG~G~~g~~aa~~--~~G~---~V~lie~~~~GGtC~n~GCiPsK~l~~~a~~~~~~~~~~~~g~~~~~~~~~~   75 (451)
T PRK07846          1 HYDLIIIGTGSGNSILDER--FADK---RIAIVEKGTFGGTCLNVGCIPTKMFVYAADVARTIREAARLGVDAELDGVRW   75 (451)
T ss_pred             CCCEEEECCCHHHHHHHHH--HCCC---eEEEEeCCCCCCcccCcCcchhHHHHHHHHHHHHHHHHHhCCccCCCCcCCH
Confidence            3799999999999998865  3565   899999865322  111 11122111              000  0000111


Q ss_pred             CCCcccc---CCCCCC-CCHhH-HHHCCcEEEeCCcEEEEeCCCcEEEeCCCeEEEeccEEeccCCCCCcCCCCCCCCcC
Q 012165          112 PGFHTCV---GSGGER-QTPEW-YKEKGIEMIYQDPVTSIDIEKQTLITNSGKLLKYGSLIVATGCTASRFPEKIGGYLP  186 (469)
Q Consensus       112 ~~~~~~~---~~~~~~-~~~~~-~~~~~i~~~~~~~v~~id~~~~~v~~~~g~~~~yd~lVlAtG~~~~~~~~~~g~~~~  186 (469)
                      .......   -..... ....+ ++..|++++.+ +...+  +.++|++.+|+++.||+||||||++|+ .|++++.+..
T Consensus        76 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~g-~a~~~--~~~~V~v~~g~~~~~d~lViATGs~p~-~p~i~g~~~~  151 (451)
T PRK07846         76 PDIVSRVFGRIDPIAAGGEEYRGRDTPNIDVYRG-HARFI--GPKTLRTGDGEEITADQVVIAAGSRPV-IPPVIADSGV  151 (451)
T ss_pred             HHHHHHHHHHHHHHhccchhhhhhhhCCcEEEEE-EEEEe--cCCEEEECCCCEEEeCEEEEcCCCCCC-CCCCCCcCCc
Confidence            1100000   000001 12233 56789999987 44444  568898888888999999999999997 5666664322


Q ss_pred             cEEEecCHHHHHHHHHhhhcCCeEEEEcCChHHHHHHHHHHhCCCeEe------------------eeHHHHHHcCcEEE
Q 012165          187 GVHYIRDVADADALISSLEKAKKVVVVGGGYIGMEVAAAAVGWKLDTT------------------RYEQLYQQNGVKFV  248 (469)
Q Consensus       187 ~v~~~~~~~~~~~~~~~~~~~~~vvVvG~G~~g~e~A~~l~~~g~~v~------------------~~~~~l~~~gV~~~  248 (469)
                      .+   .+..+...+   ...+++++|||+|++|+|+|..|+++|.+|+                  .+.+ +.+.||+++
T Consensus       152 ~~---~~~~~~~~l---~~~~~~vvIIGgG~iG~E~A~~l~~~G~~Vtli~~~~~ll~~~d~~~~~~l~~-l~~~~v~i~  224 (451)
T PRK07846        152 RY---HTSDTIMRL---PELPESLVIVGGGFIAAEFAHVFSALGVRVTVVNRSGRLLRHLDDDISERFTE-LASKRWDVR  224 (451)
T ss_pred             cE---EchHHHhhh---hhcCCeEEEECCCHHHHHHHHHHHHcCCeEEEEEcCCccccccCHHHHHHHHH-HHhcCeEEE
Confidence            22   222333332   2357899999999999999999999999988                  1222 335789999


Q ss_pred             cCCeEEEEEeCCCCcEEEEEcCCCCEEeCCEEEEccCCccCCchh--hhcCCccc-CCCEEeCCCCCCCCCceEEecccc
Q 012165          249 KGASIKNLEAGSDGRVAAVKLEDGSTIDADTIVIGIGAKPTVSPF--ERVGLNSS-VGGIQVDGQFRTRMPGIFAIGDVA  325 (469)
Q Consensus       249 ~~~~v~~i~~~~~~~v~~v~~~~g~~i~~D~vi~a~G~~p~~~~~--~~~gl~~~-~g~i~Vd~~~~t~~~~Vfa~GD~a  325 (469)
                      +++++++++.+ ++.+ .+.+.+|+++++|.|++++|++||++++  ++.+++.+ +|+|.||+++||++|||||+|||+
T Consensus       225 ~~~~v~~i~~~-~~~v-~v~~~~g~~i~~D~vl~a~G~~pn~~~l~~~~~gl~~~~~G~i~Vd~~~~Ts~p~IyA~GD~~  302 (451)
T PRK07846        225 LGRNVVGVSQD-GSGV-TLRLDDGSTVEADVLLVATGRVPNGDLLDAAAAGVDVDEDGRVVVDEYQRTSAEGVFALGDVS  302 (451)
T ss_pred             eCCEEEEEEEc-CCEE-EEEECCCcEeecCEEEEEECCccCccccCchhcCceECCCCcEeECCCcccCCCCEEEEeecC
Confidence            99999999854 3333 4677788899999999999999999884  67888875 577999999999999999999999


Q ss_pred             ccCCccCCcccccchHHHHHHHHHHHHHHHhcCCC---CCCCCCCceeeecccccCCCcceeeEEeecCCC-------cE
Q 012165          326 AFPLKMYDRTARVEHVDHARQSAQHCIKALLSAQT---HTYDYLPYFYSRVFEYEGSPRKVWWQFFGDNVG-------ET  395 (469)
Q Consensus       326 ~~~~~~~~~~~~~~~~~~A~~~a~~~a~~i~~~~~---~~~~~~p~~~~~~~~~~g~~~~~~~~~~G~~~~-------~~  395 (469)
                      ..+.          ....|..||+.+++||++...   ..+..+|+.   .|..+-      +..+|.+..       ++
T Consensus       303 ~~~~----------l~~~A~~~g~~~a~ni~~~~~~~~~~~~~~p~~---if~~p~------ia~vGlte~~a~~~g~~~  363 (451)
T PRK07846        303 SPYQ----------LKHVANHEARVVQHNLLHPDDLIASDHRFVPAA---VFTHPQ------IASVGLTENEARAAGLDI  363 (451)
T ss_pred             CCcc----------ChhHHHHHHHHHHHHHcCCCCccccCCCCCCeE---EECCCC------cEeEeCCHHHHHhcCCCE
Confidence            7542          223489999999999986422   234556653   333221      344554321       11


Q ss_pred             EE-E---c--------cCCCcEEEEEEe--CCEEEEEEeecCChHHhHH-HHHHHhCCCCCCh-hh-h-cCCCcHHHHHH
Q 012165          396 IE-I---G--------NFDPKIATFWID--SGKLKGVLVESGSPEEFQL-LPTLARSQPFVDK-AK-L-QQASSVEEALE  457 (469)
Q Consensus       396 ~~-~---~--------~~~~~~~~~~~~--~~~l~g~~~~~~~~~~~~~-~~~~~~~~~~~~~-~~-~-~~~~~~~~~~~  457 (469)
                      .. .   .        ....-|.|+.++  +++|+|+++++.++.++.. +..+|+.+.+++. .. . ..||++.|+++
T Consensus       364 ~~~~~~~~~~~~~~~~~~~~g~~Kli~d~~~~~ilG~~~~g~~a~e~i~~~~~ai~~~~t~~~l~~~~~~~hPt~~e~~~  443 (451)
T PRK07846        364 TVKVQNYGDVAYGWAMEDTTGFVKLIADRDTGRLLGAHIIGPQASTLIQPLIQAMSFGLDAREMARGQYWIHPALPEVVE  443 (451)
T ss_pred             EEEEEecCcchhhhhCCCCceEEEEEEECCCCEEEEEEEECCCHHHHHHHHHHHHHcCCCHHHHhhCCCccCCcHHHHHH
Confidence            00 0   0        001236677664  5999999988877765444 4556788888763 33 2 47999999999


Q ss_pred             HHHhcC
Q 012165          458 IARAAL  463 (469)
Q Consensus       458 ~~~~~~  463 (469)
                      .|++.+
T Consensus       444 ~a~~~~  449 (451)
T PRK07846        444 NALLGL  449 (451)
T ss_pred             HHHHhc
Confidence            998754

>PRK14727 putative mercuric reductase; Provisional

Probab=100.00  E-value=9.4e-37  Score=311.49  Aligned_cols=383  Identities=18%  Similarity=0.211  Sum_probs=249.8

Q ss_pred             CCCCcEEEEcCcHHHHHHHHHHHHcCCCCCcEEEEcCCCCCCCC---C-CCCcccccC-----------CCCCCCCCCCC
Q 012165           49 NENREFVIVGGGNAAGYAARTFVEHGMADGRLCIVSKEAYAPYE---R-PALTKGYLF-----------PLDKKPARLPG  113 (469)
Q Consensus        49 ~~~~~vvIIGgG~AGl~aA~~L~~~g~~~~~V~vie~~~~~~~~---~-~~l~~~~~~-----------~~~~~~~~~~~  113 (469)
                      ..++|++|||+|+||+++|..|+++|.   ++++||++...+..   + +--++.++.           +........+.
T Consensus        14 ~~~~dvvvIG~G~aG~~~a~~~~~~g~---~v~~ie~~~~~GG~c~n~GciPsk~l~~~a~~~~~~~~~~~~g~~~~~~~   90 (479)
T PRK14727         14 KLQLHVAIIGSGSAAFAAAIKAAEHGA---RVTIIEGADVIGGCCVNVGCVPSKILIRAAQLAHQQRSNPFDGVEAVAPS   90 (479)
T ss_pred             CCCCcEEEECCCHHHHHHHHHHHhCCC---eEEEEEccCcceeEeccccccccHHHHHHHHHHHHHhhccccCcccCCCc
Confidence            346899999999999999999999987   79999987433211   1 000111100           00000000000


Q ss_pred             Cc--cccC------CCC-CCCCHhHHHHC-CcEEEeCCcEEEEeCCCcEEEeCCCe--EEEeccEEeccCCCCCcCCCCC
Q 012165          114 FH--TCVG------SGG-ERQTPEWYKEK-GIEMIYQDPVTSIDIEKQTLITNSGK--LLKYGSLIVATGCTASRFPEKI  181 (469)
Q Consensus       114 ~~--~~~~------~~~-~~~~~~~~~~~-~i~~~~~~~v~~id~~~~~v~~~~g~--~~~yd~lVlAtG~~~~~~~~~~  181 (469)
                      +.  ....      ... .......++.. +++++.+ ++..++.....|.+.+|+  ++.||+||||||++|+ .|+++
T Consensus        91 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~G-~a~f~~~~~v~v~~~~g~~~~~~~d~lViATGs~p~-~p~i~  168 (479)
T PRK14727         91 IDRGLLLHQQQARVEELRHAKYQSILDGNPALTLLKG-YARFKDGNTLVVRLHDGGERVLAADRCLIATGSTPT-IPPIP  168 (479)
T ss_pred             cCHHHHHHHHHHHHHHHhhhhHHHHHhhcCCeEEEEE-EEEEecCCEEEEEeCCCceEEEEeCEEEEecCCCCC-CCCCC
Confidence            00  0000      000 00112233333 7888886 555566555566666663  6999999999999987 45556


Q ss_pred             CCCcCcEEEecCHHHHHHHHHhhhcCCeEEEEcCChHHHHHHHHHHhCCCeEe-----------------eeHHHHHHcC
Q 012165          182 GGYLPGVHYIRDVADADALISSLEKAKKVVVVGGGYIGMEVAAAAVGWKLDTT-----------------RYEQLYQQNG  244 (469)
Q Consensus       182 g~~~~~v~~~~~~~~~~~~~~~~~~~~~vvVvG~G~~g~e~A~~l~~~g~~v~-----------------~~~~~l~~~g  244 (469)
                      |......  ... .  +.+ .....+++++|||+|++|+|+|..|.++|.+|+                 .+.+.+++.|
T Consensus       169 G~~~~~~--~~~-~--~~l-~~~~~~k~vvVIGgG~iG~E~A~~l~~~G~~Vtlv~~~~~l~~~d~~~~~~l~~~L~~~G  242 (479)
T PRK14727        169 GLMDTPY--WTS-T--EAL-FSDELPASLTVIGSSVVAAEIAQAYARLGSRVTILARSTLLFREDPLLGETLTACFEKEG  242 (479)
T ss_pred             CcCccce--ecc-h--HHh-ccccCCCeEEEECCCHHHHHHHHHHHHcCCEEEEEEcCCCCCcchHHHHHHHHHHHHhCC
Confidence            5322211  111 1  111 112346899999999999999999999999988                 3456788899


Q ss_pred             cEEEcCCeEEEEEeCCCCcEEEEEcCCCCEEeCCEEEEccCCccCCch--hhhcCCccc-CCCEEeCCCCCCCCCceEEe
Q 012165          245 VKFVKGASIKNLEAGSDGRVAAVKLEDGSTIDADTIVIGIGAKPTVSP--FERVGLNSS-VGGIQVDGQFRTRMPGIFAI  321 (469)
Q Consensus       245 V~~~~~~~v~~i~~~~~~~v~~v~~~~g~~i~~D~vi~a~G~~p~~~~--~~~~gl~~~-~g~i~Vd~~~~t~~~~Vfa~  321 (469)
                      |++++++++++++..++ .+ .+.+.++ ++++|.||+++|++||+.+  ++.++++.+ +|+|.||+++||++|+|||+
T Consensus       243 V~i~~~~~V~~i~~~~~-~~-~v~~~~g-~i~aD~VlvA~G~~pn~~~l~l~~~g~~~~~~G~i~Vd~~~~Ts~~~IyA~  319 (479)
T PRK14727        243 IEVLNNTQASLVEHDDN-GF-VLTTGHG-ELRAEKLLISTGRHANTHDLNLEAVGVTTDTSGAIVVNPAMETSAPDIYAA  319 (479)
T ss_pred             CEEEcCcEEEEEEEeCC-EE-EEEEcCC-eEEeCEEEEccCCCCCccCCCchhhCceecCCCCEEECCCeecCCCCEEEe
Confidence            99999999999985433 22 3555555 6999999999999999986  577788775 57799999999999999999


Q ss_pred             ccccccCCccCCcccccchHHHHHHHHHHHHHHHhcCCC-CCCCCCCceeeecccccCCCcceeeEEeecCCCc------
Q 012165          322 GDVAAFPLKMYDRTARVEHVDHARQSAQHCIKALLSAQT-HTYDYLPYFYSRVFEYEGSPRKVWWQFFGDNVGE------  394 (469)
Q Consensus       322 GD~a~~~~~~~~~~~~~~~~~~A~~~a~~~a~~i~~~~~-~~~~~~p~~~~~~~~~~g~~~~~~~~~~G~~~~~------  394 (469)
                      |||+..+.          ....|..+|+.+|.+|++... ..+...|+  .. |..+.      +..+|....+      
T Consensus       320 GD~~~~~~----------~~~~A~~~G~~aa~~i~g~~~~~~~~~~p~--~~-~~~p~------ia~vGlte~~a~~~g~  380 (479)
T PRK14727        320 GDCSDLPQ----------FVYVAAAAGSRAGINMTGGNATLDLSAMPA--VI-FTDPQ------VATVGLSEAKAHLSGI  380 (479)
T ss_pred             eecCCcch----------hhhHHHHHHHHHHHHHcCCCcccccccCCc--EE-EecCc------eeeeeCCHHHHHHcCC
Confidence            99997643          234588999999999986432 22344554  22 32211      4445543211      


Q ss_pred             -E---EE---------EccCCCcEEEEEEe--CCEEEEEEeecCChHHhHH-HHHHHhCCCCCCh--hhhcCCCcHHHHH
Q 012165          395 -T---IE---------IGNFDPKIATFWID--SGKLKGVLVESGSPEEFQL-LPTLARSQPFVDK--AKLQQASSVEEAL  456 (469)
Q Consensus       395 -~---~~---------~~~~~~~~~~~~~~--~~~l~g~~~~~~~~~~~~~-~~~~~~~~~~~~~--~~~~~~~~~~~~~  456 (469)
                       .   ..         .......+.|++++  +++|+|+++++.++.++.. +..+|+.+.+++.  .....|||++|++
T Consensus       381 ~~~~~~~~~~~~~~~~~~~~~~g~~Kli~d~~~~~ilG~~~~g~~a~e~i~~~~~ai~~~~t~~~l~~~~~~hPt~~E~~  460 (479)
T PRK14727        381 ETISRVLTMENVPRALANFETDGFIKLVAEEGTRKLIGAQILAHEGGELIQSAALAIHNRMTVEELADQLFPYLTMVEGL  460 (479)
T ss_pred             ceEEEEEEcccCchhhhcCCCCeEEEEEEECCCCEEEEEEEECCCHHHHHHHHHHHHHcCCCHHHHhcCCccCCChHHHH
Confidence             0   00         01112236777774  5999999987777765554 4556788877763  2246799999999


Q ss_pred             HHHHhcCC
Q 012165          457 EIARAALP  464 (469)
Q Consensus       457 ~~~~~~~~  464 (469)
                      +.|++.+.
T Consensus       461 ~~~~~~~~  468 (479)
T PRK14727        461 KLCAQTFR  468 (479)
T ss_pred             HHHHHhhh
Confidence            99997543

>PRK12779 putative bifunctional glutamate synthase subunit beta/2-polyprenylphenol hydroxylase; Provisional

Probab=100.00  E-value=1.8e-38  Score=342.08  Aligned_cols=319  Identities=19%  Similarity=0.183  Sum_probs=233.4

Q ss_pred             ccccccccccccccccc--CCCCcccccccCCccccccccccccc---------------cc-CCCCCCcEEEEcCcHHH
Q 012165            2 ASVSNSLSFKHGLSLWC--PQSPSLHRIRHSSAKNFQRRGFVVAY---------------SS-FANENREFVIVGGGNAA   63 (469)
Q Consensus         2 ~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~---------------~~-~~~~~~~vvIIGgG~AG   63 (469)
                      ..++||||.+|||+||+  +|+.+|.+...+|++..++|++.+..               .+ .....++|+||||||||
T Consensus       239 i~~~np~p~~~GrVCp~~~~CE~~C~~~~~pV~I~~ler~i~d~~~~~~~~~~~~~~~~~~~~~~~~gkkVaVIGsGPAG  318 (944)
T PRK12779        239 IESCNPLPNVTGRVCPQELQCQGVCTHTKRPIEIGQLEWYLPQHEKLVNPNANERFAGRISPWAAAVKPPIAVVGSGPSG  318 (944)
T ss_pred             HHHhCChhHHhcCcCCCccCHHHhccCCCcCcchhHHHHHHHHHHHhhchhhhhcccccccccccCCCCeEEEECCCHHH
Confidence            35799999999999999  79999999888999999988765431               01 12457899999999999


Q ss_pred             HHHHHHHHHcCCCCCcEEEEcCCCCCCCCCCCCcccccCCCCCCCCCCCCCccccCCCCCCCCHhHHHHCCcEEEeCCcE
Q 012165           64 GYAARTFVEHGMADGRLCIVSKEAYAPYERPALTKGYLFPLDKKPARLPGFHTCVGSGGERQTPEWYKEKGIEMIYQDPV  143 (469)
Q Consensus        64 l~aA~~L~~~g~~~~~V~vie~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~v  143 (469)
                      |+||..|++.|+   +|||+|+.+.++..   +.  |-.+    ..++|.       +...+..+.+++.|++++.++.+
T Consensus       319 LsaA~~Lar~G~---~VtVfE~~~~~GG~---l~--yGIP----~~rlp~-------~vi~~~i~~l~~~Gv~f~~n~~v  379 (944)
T PRK12779        319 LINAYLLAVEGF---PVTVFEAFHDLGGV---LR--YGIP----EFRLPN-------QLIDDVVEKIKLLGGRFVKNFVV  379 (944)
T ss_pred             HHHHHHHHHCCC---eEEEEeeCCCCCce---EE--ccCC----CCcChH-------HHHHHHHHHHHhhcCeEEEeEEe
Confidence            999999999998   79999988654311   00  1011    112210       00123346678889999987543


Q ss_pred             EEEeCCCcEEEeCCCeEEEeccEEeccCCC-CCcCCCCCCCCcCcEEEecCHHHHHHHHHh----------hhcCCeEEE
Q 012165          144 TSIDIEKQTLITNSGKLLKYGSLIVATGCT-ASRFPEKIGGYLPGVHYIRDVADADALISS----------LEKAKKVVV  212 (469)
Q Consensus       144 ~~id~~~~~v~~~~g~~~~yd~lVlAtG~~-~~~~~~~~g~~~~~v~~~~~~~~~~~~~~~----------~~~~~~vvV  212 (469)
                            ++.+++++.....||+|+||||+. |+ .+.+||.+.+|+++..++.+.......          ...+++|+|
T Consensus       380 ------G~dit~~~l~~~~yDAV~LAtGA~~pr-~l~IpG~dl~GV~~a~dfL~~~~~~~~~~~~~~~~~~~~~Gk~VvV  452 (944)
T PRK12779        380 ------GKTATLEDLKAAGFWKIFVGTGAGLPT-FMNVPGEHLLGVMSANEFLTRVNLMRGLDDDYETPLPEVKGKEVFV  452 (944)
T ss_pred             ------ccEEeHHHhccccCCEEEEeCCCCCCC-cCCCCCCcCcCcEEHHHHHHHHHhhccccccccccccccCCCEEEE
Confidence                  355777666666899999999995 55 566789888999887655543322111          125799999


Q ss_pred             EcCChHHHHHHHHHHhCCCeEe---------------eeHHHHHHcCcEEEcCCeEEEEEeCCC-CcEEEEEc-------
Q 012165          213 VGGGYIGMEVAAAAVGWKLDTT---------------RYEQLYQQNGVKFVKGASIKNLEAGSD-GRVAAVKL-------  269 (469)
Q Consensus       213 vG~G~~g~e~A~~l~~~g~~v~---------------~~~~~l~~~gV~~~~~~~v~~i~~~~~-~~v~~v~~-------  269 (469)
                      ||||.+|+++|..+.++|.+|+               .+.. ..+.||+++++..+.++..+++ +.+.++++       
T Consensus       453 IGGG~tA~D~A~ta~R~Ga~Vtlv~rr~~~~mpa~~~e~~~-a~eeGV~~~~~~~p~~i~~d~~~~~V~~v~~~~~~l~~  531 (944)
T PRK12779        453 IGGGNTAMDAARTAKRLGGNVTIVYRRTKSEMPARVEELHH-ALEEGINLAVLRAPREFIGDDHTHFVTHALLDVNELGE  531 (944)
T ss_pred             ECCCHHHHHHHHHHHHcCCEEEEEEecCcccccccHHHHHH-HHHCCCEEEeCcceEEEEecCCCCEEEEEEEEEEEecc
Confidence            9999999999999999999887               1122 3467999999999999975432 34544432       


Q ss_pred             --C--------CC--CEEeCCEEEEccCCccCCchhh-hcCCccc-CCCEEeCC-CCCCCCCceEEeccccccCCccCCc
Q 012165          270 --E--------DG--STIDADTIVIGIGAKPTVSPFE-RVGLNSS-VGGIQVDG-QFRTRMPGIFAIGDVAAFPLKMYDR  334 (469)
Q Consensus       270 --~--------~g--~~i~~D~vi~a~G~~p~~~~~~-~~gl~~~-~g~i~Vd~-~~~t~~~~Vfa~GD~a~~~~~~~~~  334 (469)
                        .        +|  .++++|.||+|+|..|+..+.. ..+++.+ +|.|.||+ +++|+.|+|||+|||+..+.     
T Consensus       532 ~d~~Gr~~~~~~G~e~~i~aD~VI~AiG~~p~~~l~~~~~gle~~~~G~I~vd~~~~~Ts~pgVFAaGD~~~G~~-----  606 (944)
T PRK12779        532 PDKSGRRSPKPTGEIERVPVDLVIMALGNTANPIMKDAEPGLKTNKWGTIEVEKGSQRTSIKGVYSGGDAARGGS-----  606 (944)
T ss_pred             ccCcCceeeecCCceEEEECCEEEEcCCcCCChhhhhcccCceECCCCCEEECCCCCccCCCCEEEEEcCCCChH-----
Confidence              1        22  3699999999999999865432 3467665 57799996 58999999999999997532     


Q ss_pred             ccccchHHHHHHHHHHHHHHHhc
Q 012165          335 TARVEHVDHARQSAQHCIKALLS  357 (469)
Q Consensus       335 ~~~~~~~~~A~~~a~~~a~~i~~  357 (469)
                           .+..|+.+|+.||.+|..
T Consensus       607 -----~vv~Ai~eGr~AA~~I~~  624 (944)
T PRK12779        607 -----TAIRAAGDGQAAAKEIVG  624 (944)
T ss_pred             -----HHHHHHHHHHHHHHHHHH
Confidence                 345689999999999864

>PRK07251 pyridine nucleotide-disulfide oxidoreductase; Provisional

Probab=100.00  E-value=1.1e-37  Score=315.85  Aligned_cols=375  Identities=16%  Similarity=0.205  Sum_probs=243.9

Q ss_pred             CCCcEEEEcCcHHHHHHHHHHHHcCCCCCcEEEEcCCCCC-CCC---CCCC-cccccCCCCCCCCCCCCCccc---cCCC
Q 012165           50 ENREFVIVGGGNAAGYAARTFVEHGMADGRLCIVSKEAYA-PYE---RPAL-TKGYLFPLDKKPARLPGFHTC---VGSG  121 (469)
Q Consensus        50 ~~~~vvIIGgG~AGl~aA~~L~~~g~~~~~V~vie~~~~~-~~~---~~~l-~~~~~~~~~~~~~~~~~~~~~---~~~~  121 (469)
                      +++||+||||||||++||..|++.|.   +|+|||+++.. +..   +..+ ++.++... ....++......   ....
T Consensus         2 ~~~dvvVIG~GpaG~~aA~~l~~~g~---~V~liE~~~~~~GG~c~~~gciP~k~~~~~~-~~~~~~~~~~~~~~~~~~~   77 (438)
T PRK07251          2 LTYDLIVIGFGKAGKTLAAKLASAGK---KVALVEESKAMYGGTCINIGCIPTKTLLVAA-EKNLSFEQVMATKNTVTSR   77 (438)
T ss_pred             CccCEEEECCCHHHHHHHHHHHhCCC---EEEEEecCCcccceeeecCccccchHhhhhh-hcCCCHHHHHHHHHHHHHH
Confidence            36899999999999999999999987   79999998642 211   1111 11111110 000011100000   0000


Q ss_pred             CCCCCHhHHHHCCcEEEeCCcEEEEeCCCcEEEeCC---CeEEEeccEEeccCCCCCcCCCCCCC-CcCcEEEecCHHHH
Q 012165          122 GERQTPEWYKEKGIEMIYQDPVTSIDIEKQTLITNS---GKLLKYGSLIVATGCTASRFPEKIGG-YLPGVHYIRDVADA  197 (469)
Q Consensus       122 ~~~~~~~~~~~~~i~~~~~~~v~~id~~~~~v~~~~---g~~~~yd~lVlAtG~~~~~~~~~~g~-~~~~v~~~~~~~~~  197 (469)
                      ......+.+.+.+++++.+ ++..+  ++++|.+.+   ..++.||+||||||++|+ .|+++|. +.+++++      +
T Consensus        78 ~~~~~~~~~~~~gV~~~~g-~~~~~--~~~~v~v~~~~~~~~~~~d~vViATGs~~~-~p~i~G~~~~~~v~~------~  147 (438)
T PRK07251         78 LRGKNYAMLAGSGVDLYDA-EAHFV--SNKVIEVQAGDEKIELTAETIVINTGAVSN-VLPIPGLADSKHVYD------S  147 (438)
T ss_pred             HHHHHHHHHHhCCCEEEEE-EEEEc--cCCEEEEeeCCCcEEEEcCEEEEeCCCCCC-CCCCCCcCCCCcEEc------h
Confidence            0011234566779998886 44433  456665543   246999999999999987 4556664 2334433      2


Q ss_pred             HHHHHhhhcCCeEEEEcCChHHHHHHHHHHhCCCeEe------------------eeHHHHHHcCcEEEcCCeEEEEEeC
Q 012165          198 DALISSLEKAKKVVVVGGGYIGMEVAAAAVGWKLDTT------------------RYEQLYQQNGVKFVKGASIKNLEAG  259 (469)
Q Consensus       198 ~~~~~~~~~~~~vvVvG~G~~g~e~A~~l~~~g~~v~------------------~~~~~l~~~gV~~~~~~~v~~i~~~  259 (469)
                      ..+......+++++|||+|++|+|+|..++++|.+|+                  .+.+.+++.||++++++++++++.+
T Consensus       148 ~~~~~~~~~~~~vvIIGgG~~g~e~A~~l~~~g~~Vtli~~~~~~l~~~~~~~~~~~~~~l~~~GI~i~~~~~V~~i~~~  227 (438)
T PRK07251        148 TGIQSLETLPERLGIIGGGNIGLEFAGLYNKLGSKVTVLDAASTILPREEPSVAALAKQYMEEDGITFLLNAHTTEVKND  227 (438)
T ss_pred             HHHhcchhcCCeEEEECCCHHHHHHHHHHHHcCCeEEEEecCCccCCCCCHHHHHHHHHHHHHcCCEEEcCCEEEEEEec
Confidence            3333333467899999999999999999999999987                  3356678899999999999999853


Q ss_pred             CCCcEEEEEcCCCCEEeCCEEEEccCCccCCch--hhhcCCccc-CCCEEeCCCCCCCCCceEEeccccccCCccCCccc
Q 012165          260 SDGRVAAVKLEDGSTIDADTIVIGIGAKPTVSP--FERVGLNSS-VGGIQVDGQFRTRMPGIFAIGDVAAFPLKMYDRTA  336 (469)
Q Consensus       260 ~~~~v~~v~~~~g~~i~~D~vi~a~G~~p~~~~--~~~~gl~~~-~g~i~Vd~~~~t~~~~Vfa~GD~a~~~~~~~~~~~  336 (469)
                       ++.+ .+. .+|+++++|.+|+++|.+|+++.  +++.++..+ +|++.||+++||+.|||||+|||+..+.       
T Consensus       228 -~~~v-~v~-~~g~~i~~D~viva~G~~p~~~~l~l~~~~~~~~~~g~i~vd~~~~t~~~~IyaiGD~~~~~~-------  297 (438)
T PRK07251        228 -GDQV-LVV-TEDETYRFDALLYATGRKPNTEPLGLENTDIELTERGAIKVDDYCQTSVPGVFAVGDVNGGPQ-------  297 (438)
T ss_pred             -CCEE-EEE-ECCeEEEcCEEEEeeCCCCCcccCCchhcCcEECCCCcEEECCCcccCCCCEEEeeecCCCcc-------
Confidence             3333 233 45778999999999999999875  455666654 5779999999999999999999997543       


Q ss_pred             ccchHHHHHHHHHHHHHHHhcCCC---CCCCCCCceeeecccccCCCcceeeEEeecCCC-------cEEE----Ecc--
Q 012165          337 RVEHVDHARQSAQHCIKALLSAQT---HTYDYLPYFYSRVFEYEGSPRKVWWQFFGDNVG-------ETIE----IGN--  400 (469)
Q Consensus       337 ~~~~~~~A~~~a~~~a~~i~~~~~---~~~~~~p~~~~~~~~~~g~~~~~~~~~~G~~~~-------~~~~----~~~--  400 (469)
                       ..++  |..+++.++.++.+...   ..+..+|+.  ..++.+       +..+|....       +...    ...  
T Consensus       298 -~~~~--a~~~~~~~~~~~~~~~~~~~~~~~~~p~~--~~~~p~-------ia~vGlte~~a~~~g~~~~~~~~~~~~~~  365 (438)
T PRK07251        298 -FTYI--SLDDFRIVFGYLTGDGSYTLEDRGNVPTT--MFITPP-------LSQVGLTEKEAKEAGLPYAVKELLVAAMP  365 (438)
T ss_pred             -cHhH--HHHHHHHHHHHHcCCCCccccccCCCCEE--EECCCc-------eEeeeCCHHHHHhcCCCeEEEEEECCcch
Confidence             2233  77888999988886432   122345542  222221       333443221       0000    000  


Q ss_pred             ----CC--CcEEEEEEe--CCEEEEEEeecCChHHhHH-HHHHHhCCCCCCh--hhhcCCCcHHHHHHHHH
Q 012165          401 ----FD--PKIATFWID--SGKLKGVLVESGSPEEFQL-LPTLARSQPFVDK--AKLQQASSVEEALEIAR  460 (469)
Q Consensus       401 ----~~--~~~~~~~~~--~~~l~g~~~~~~~~~~~~~-~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~  460 (469)
                          ..  ..+.|++++  +++|+|++++++++.++.. +.-+|+.+.+++.  ..+..|||+.|.++.+.
T Consensus       366 ~~~~~~~~~g~~kli~d~~~~~ilG~~~~g~~a~e~i~~~~~ai~~~~t~~~l~~~~~~hPt~~e~~~~~~  436 (438)
T PRK07251        366 RAHVNNDLRGAFKVVVNTETKEILGATLFGEGSQEIINLITMAMDNKIPYTYFKKQIFTHPTMAENLNDLF  436 (438)
T ss_pred             hhhhcCCCcEEEEEEEECCCCEEEEEEEECCCHHHHHHHHHHHHHCCCCHHHHhcccccCCChHHHHHHHh
Confidence                01  226677664  5999999988877766554 4556788877662  33467999999998763

>TIGR01423 trypano_reduc trypanothione-disulfide reductase

Probab=100.00  E-value=2.3e-37  Score=314.22  Aligned_cols=376  Identities=19%  Similarity=0.244  Sum_probs=245.8

Q ss_pred             CCCcEEEEcCcHHHHHHHHHHHHc-CCCCCcEEEEcCC--------CCCCC---CCCCC-cccccCC---------CCCC
Q 012165           50 ENREFVIVGGGNAAGYAARTFVEH-GMADGRLCIVSKE--------AYAPY---ERPAL-TKGYLFP---------LDKK  107 (469)
Q Consensus        50 ~~~~vvIIGgG~AGl~aA~~L~~~-g~~~~~V~vie~~--------~~~~~---~~~~l-~~~~~~~---------~~~~  107 (469)
                      ..+|++|||||++|..||..+++. |.   +|+|||++        ..++.   ++-.. +|.++..         ....
T Consensus         2 ~~~DviVIG~G~~G~~aA~~aa~~~g~---~V~lie~~~~~~~~~~~~~GGtCln~GCiPsK~l~~~a~~~~~~~~~~~~   78 (486)
T TIGR01423         2 KAFDLVVIGAGSGGLEAGWNAATLYKK---RVAVIDVQTHHGPPHYAALGGTCVNVGCVPKKLMVTGAQYMDTLRESAGF   78 (486)
T ss_pred             CccCEEEECCChHHHHHHHHHHHhcCC---EEEEEecccCccccccCCccCeecCcCCccHHHHHHHHHHHHHHHHhhcc
Confidence            468999999999999999999996 66   89999974        12221   11111 2211100         0000


Q ss_pred             ---------CCCCCCCccccC---CCCCCCCHhHHHH-CCcEEEeCCcEEEEeCCCcEEEeCC--------CeEEEeccE
Q 012165          108 ---------PARLPGFHTCVG---SGGERQTPEWYKE-KGIEMIYQDPVTSIDIEKQTLITNS--------GKLLKYGSL  166 (469)
Q Consensus       108 ---------~~~~~~~~~~~~---~~~~~~~~~~~~~-~~i~~~~~~~v~~id~~~~~v~~~~--------g~~~~yd~l  166 (469)
                               ..++........   ........+.+++ .+++++.+ +..-++  .++|.+.+        .+++.||+|
T Consensus        79 gi~~~~~~~~~d~~~~~~~~~~~v~~~~~~~~~~l~~~~gv~~i~G-~a~f~~--~~~v~V~~~~~~~~~~~~~~~~d~l  155 (486)
T TIGR01423        79 GWEFDRSSVKANWKALIAAKNKAVLDINKSYEGMFADTEGLTFFLG-WGALED--KNVVLVRESADPKSAVKERLQAEHI  155 (486)
T ss_pred             CeeccCCccccCHHHHHHHHHHHHHHHHHHHHHHhhcCCCeEEEEE-EEEEcc--CCEEEEeeccCCCCCcceEEECCEE
Confidence                     000000000000   0000011123444 48999987 444333  45565531        247999999


Q ss_pred             EeccCCCCCcCCCCCCCCcCcEEEecCHHHHHHHHHhhhcCCeEEEEcCChHHHHHHHHHHhC---CCeEe---------
Q 012165          167 IVATGCTASRFPEKIGGYLPGVHYIRDVADADALISSLEKAKKVVVVGGGYIGMEVAAAAVGW---KLDTT---------  234 (469)
Q Consensus       167 VlAtG~~~~~~~~~~g~~~~~v~~~~~~~~~~~~~~~~~~~~~vvVvG~G~~g~e~A~~l~~~---g~~v~---------  234 (469)
                      |||||++|. .|+++|.+  .+.   +..+.   ......+++++|||+|++|+|+|..+..+   |.+|+         
T Consensus       156 IIATGs~p~-~p~i~G~~--~~~---~~~~~---~~~~~~~~~vvIIGgG~iG~E~A~~~~~l~~~G~~Vtli~~~~~il  226 (486)
T TIGR01423       156 LLATGSWPQ-MLGIPGIE--HCI---SSNEA---FYLDEPPRRVLTVGGGFISVEFAGIFNAYKPRGGKVTLCYRNNMIL  226 (486)
T ss_pred             EEecCCCCC-CCCCCChh--hee---chhhh---hccccCCCeEEEECCCHHHHHHHHHHHHhccCCCeEEEEecCCccc
Confidence            999999986 45555532  222   22222   22224579999999999999999877655   88887         


Q ss_pred             ---------eeHHHHHHcCcEEEcCCeEEEEEeCCCCcEEEEEcCCCCEEeCCEEEEccCCccCCch--hhhcCCccc-C
Q 012165          235 ---------RYEQLYQQNGVKFVKGASIKNLEAGSDGRVAAVKLEDGSTIDADTIVIGIGAKPTVSP--FERVGLNSS-V  302 (469)
Q Consensus       235 ---------~~~~~l~~~gV~~~~~~~v~~i~~~~~~~v~~v~~~~g~~i~~D~vi~a~G~~p~~~~--~~~~gl~~~-~  302 (469)
                               .+.+.|++.||++++++.+++++..+++. ..+.+.+|+++++|.||+++|++||+++  +++.+++.+ +
T Consensus       227 ~~~d~~~~~~l~~~L~~~GI~i~~~~~v~~i~~~~~~~-~~v~~~~g~~i~~D~vl~a~G~~Pn~~~l~l~~~gl~~~~~  305 (486)
T TIGR01423       227 RGFDSTLRKELTKQLRANGINIMTNENPAKVTLNADGS-KHVTFESGKTLDVDVVMMAIGRVPRTQTLQLDKVGVELTKK  305 (486)
T ss_pred             cccCHHHHHHHHHHHHHcCCEEEcCCEEEEEEEcCCce-EEEEEcCCCEEEcCEEEEeeCCCcCcccCCchhhCceECCC
Confidence                     45677889999999999999998643433 3567778889999999999999999986  467888775 5


Q ss_pred             CCEEeCCCCCCCCCceEEeccccccCCccCCcccccchHHHHHHHHHHHHHHHhcCCCC--CCCCCCceeeecccccCCC
Q 012165          303 GGIQVDGQFRTRMPGIFAIGDVAAFPLKMYDRTARVEHVDHARQSAQHCIKALLSAQTH--TYDYLPYFYSRVFEYEGSP  380 (469)
Q Consensus       303 g~i~Vd~~~~t~~~~Vfa~GD~a~~~~~~~~~~~~~~~~~~A~~~a~~~a~~i~~~~~~--~~~~~p~~~~~~~~~~g~~  380 (469)
                      |+|.||+++||++|||||+|||+..+.          ....|..+|+.+++||++....  .+..+|+   ..|+.+-  
T Consensus       306 G~I~Vd~~l~Ts~~~IyA~GDv~~~~~----------l~~~A~~qG~~aa~ni~g~~~~~~~~~~vp~---~vft~pe--  370 (486)
T TIGR01423       306 GAIQVDEFSRTNVPNIYAIGDVTDRVM----------LTPVAINEGAAFVDTVFGNKPRKTDHTRVAS---AVFSIPP--  370 (486)
T ss_pred             CCEecCCCCcCCCCCEEEeeecCCCcc----------cHHHHHHHHHHHHHHHhCCCCcccCCCCCCE---EEeCCCc--
Confidence            779999999999999999999997543          2344899999999999975332  3344664   4444321  


Q ss_pred             cceeeEEeecCCCc-------EE-E-----------EccC-CCcEEEEEEe--CCEEEEEEeecCChHHhHH-HHHHHhC
Q 012165          381 RKVWWQFFGDNVGE-------TI-E-----------IGNF-DPKIATFWID--SGKLKGVLVESGSPEEFQL-LPTLARS  437 (469)
Q Consensus       381 ~~~~~~~~G~~~~~-------~~-~-----------~~~~-~~~~~~~~~~--~~~l~g~~~~~~~~~~~~~-~~~~~~~  437 (469)
                          +..+|.+..+       .. .           .+.. ..-|.|+.++  +++|+|+++++.++.++.. +..+++.
T Consensus       371 ----ia~vGlte~eA~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~Klv~d~~~~~iLGa~ivg~~a~elI~~~~~ai~~  446 (486)
T TIGR01423       371 ----IGTCGLVEEDAAKKFEKVAVYESSFTPLMHNISGSKYKKFVAKIVTNHADGTVLGVHLLGDSSPEIIQAVGICLKL  446 (486)
T ss_pred             ----eEEeeCCHHHHHhcCCceEEEEEeeCchhhhhccCccCceEEEEEEECCCCEEEEEEEECCCHHHHHHHHHHHHHc
Confidence                3344433210       00 0           0111 1236677764  5899999987777766544 4556788


Q ss_pred             CCCCCh--hhhcCCCcHHHHHHHHH
Q 012165          438 QPFVDK--AKLQQASSVEEALEIAR  460 (469)
Q Consensus       438 ~~~~~~--~~~~~~~~~~~~~~~~~  460 (469)
                      +.+++.  ..++.|||+.|++..+.
T Consensus       447 ~~t~~dl~~~~~~hPt~sE~~~~~~  471 (486)
T TIGR01423       447 NAKISDFYNTIGVHPTSAEELCSMR  471 (486)
T ss_pred             CCCHHHHhhcccCCCCcHHHHHhhc
Confidence            887762  33478999999999986

Trypanothione, a glutathione-modified derivative of spermidine, is (in its reduced form) an important antioxidant found in trypanosomatids (Crithidia, Leishmania, Trypanosoma). This model describes trypanothione reductase, a possible antitrypanosomal drug target closely related to some forms of glutathione reductase.

>PTZ00318 NADH dehydrogenase-like protein; Provisional

Probab=100.00  E-value=8.9e-38  Score=314.38  Aligned_cols=290  Identities=20%  Similarity=0.271  Sum_probs=217.0

Q ss_pred             CCCCcEEEEcCcHHHHHHHHHHHHcCCCCCcEEEEcCCCCCCCCCCCCcccccCCCCCCCCCCCCCccccCCCCCCCCHh
Q 012165           49 NENREFVIVGGGNAAGYAARTFVEHGMADGRLCIVSKEAYAPYERPALTKGYLFPLDKKPARLPGFHTCVGSGGERQTPE  128 (469)
Q Consensus        49 ~~~~~vvIIGgG~AGl~aA~~L~~~g~~~~~V~vie~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  128 (469)
                      +.+++|||||||+||+.+|..|.+.   +.+|||||+++++.|. |.++. +..+... ...+           .....+
T Consensus         8 ~~~~~vVIvGgG~aGl~~a~~L~~~---~~~ItlI~~~~~~~~~-~~l~~-~~~g~~~-~~~~-----------~~~~~~   70 (424)
T PTZ00318          8 LKKPNVVVLGTGWAGAYFVRNLDPK---KYNITVISPRNHMLFT-PLLPQ-TTTGTLE-FRSI-----------CEPVRP   70 (424)
T ss_pred             CCCCeEEEECCCHHHHHHHHHhCcC---CCeEEEEcCCCCcchh-hhHHH-hcccCCC-hHHh-----------HHHHHH
Confidence            4567999999999999999999654   3489999999998774 55543 2222111 1111           112234


Q ss_pred             HHHHCCcEEEeCCcEEEEeCCCcEEEe----------CCCeEEEeccEEeccCCCCCcCCCCCCCCcCcEEEecCHHHHH
Q 012165          129 WYKEKGIEMIYQDPVTSIDIEKQTLIT----------NSGKLLKYGSLIVATGCTASRFPEKIGGYLPGVHYIRDVADAD  198 (469)
Q Consensus       129 ~~~~~~i~~~~~~~v~~id~~~~~v~~----------~~g~~~~yd~lVlAtG~~~~~~~~~~g~~~~~v~~~~~~~~~~  198 (469)
                      .+...+++++. .+|++||++++.|.+          +++.+++||+||||||+.+. .+.+||.. +..+.++++.++.
T Consensus        71 ~~~~~~~~~i~-~~V~~Id~~~~~v~~~~~~~~~~~~~~g~~i~yD~LViAtGs~~~-~~~ipG~~-e~~~~~~~~~~a~  147 (424)
T PTZ00318         71 ALAKLPNRYLR-AVVYDVDFEEKRVKCGVVSKSNNANVNTFSVPYDKLVVAHGARPN-TFNIPGVE-ERAFFLKEVNHAR  147 (424)
T ss_pred             HhccCCeEEEE-EEEEEEEcCCCEEEEecccccccccCCceEecCCEEEECCCcccC-CCCCCCHH-HcCCCCCCHHHHH
Confidence            45667888887 599999999999988          46778999999999999986 45566643 3455677777776


Q ss_pred             HHHHhhh-----------------cCCeEEEEcCChHHHHHHHHHHhC--------------CCeEe-------------
Q 012165          199 ALISSLE-----------------KAKKVVVVGGGYIGMEVAAAAVGW--------------KLDTT-------------  234 (469)
Q Consensus       199 ~~~~~~~-----------------~~~~vvVvG~G~~g~e~A~~l~~~--------------g~~v~-------------  234 (469)
                      .+++.+.                 ..++++|||+|++|+|+|..|..+              +.+++             
T Consensus       148 ~~~~~l~~~~~~~~~~~~~~~~~~~~~~vvVvGgG~~GvE~A~~l~~~~~~~~~~~~~~~~~~~~Vtlv~~~~~ll~~~~  227 (424)
T PTZ00318        148 GIRKRIVQCIERASLPTTSVEERKRLLHFVVVGGGPTGVEFAAELADFFRDDVRNLNPELVEECKVTVLEAGSEVLGSFD  227 (424)
T ss_pred             HHHHHHHHHHHHhcCCCCChHHHhccCEEEEECCCHHHHHHHHHHHHHHHHHHHhhhhcccccCEEEEEcCCCcccccCC
Confidence            6654431                 124899999999999999998753              56665             


Q ss_pred             -----eeHHHHHHcCcEEEcCCeEEEEEeCCCCcEEEEEcCCCCEEeCCEEEEccCCccCCchhhhcCCccc-CCCEEeC
Q 012165          235 -----RYEQLYQQNGVKFVKGASIKNLEAGSDGRVAAVKLEDGSTIDADTIVIGIGAKPTVSPFERVGLNSS-VGGIQVD  308 (469)
Q Consensus       235 -----~~~~~l~~~gV~~~~~~~v~~i~~~~~~~v~~v~~~~g~~i~~D~vi~a~G~~p~~~~~~~~gl~~~-~g~i~Vd  308 (469)
                           .+++.|++.||+++++++|+++..+      .+.+++|+++++|.+|+++|.+|+ +++++++++.+ +|+|.||
T Consensus       228 ~~~~~~~~~~L~~~gV~v~~~~~v~~v~~~------~v~~~~g~~i~~d~vi~~~G~~~~-~~~~~~~l~~~~~G~I~Vd  300 (424)
T PTZ00318        228 QALRKYGQRRLRRLGVDIRTKTAVKEVLDK------EVVLKDGEVIPTGLVVWSTGVGPG-PLTKQLKVDKTSRGRISVD  300 (424)
T ss_pred             HHHHHHHHHHHHHCCCEEEeCCeEEEEeCC------EEEECCCCEEEccEEEEccCCCCc-chhhhcCCcccCCCcEEeC
Confidence                 4567789999999999999999742      467889999999999999999998 68888888765 5899999


Q ss_pred             CCCC-CCCCceEEeccccccCCccCCcccccchHHHHHHHHHHHHHHHhcCCCCCCCCCCcee
Q 012165          309 GQFR-TRMPGIFAIGDVAAFPLKMYDRTARVEHVDHARQSAQHCIKALLSAQTHTYDYLPYFY  370 (469)
Q Consensus       309 ~~~~-t~~~~Vfa~GD~a~~~~~~~~~~~~~~~~~~A~~~a~~~a~~i~~~~~~~~~~~p~~~  370 (469)
                      ++|| +++|||||+|||+..+....     ...++.|..||..+|+||...-.......||.|
T Consensus       301 ~~l~~~~~~~IfAiGD~a~~~~~~~-----~~~~~~A~~qg~~~A~ni~~~l~g~~~~~~~~~  358 (424)
T PTZ00318        301 DHLRVKPIPNVFALGDCAANEERPL-----PTLAQVASQQGVYLAKEFNNELKGKPMSKPFVY  358 (424)
T ss_pred             CCcccCCCCCEEEEeccccCCCCCC-----CCchHHHHHHHHHHHHHHHHHhcCCCCCCCCee
Confidence            9999 59999999999998643211     235667999999999999753211113455544

>PRK11749 dihydropyrimidine dehydrogenase subunit A; Provisional

Probab=100.00  E-value=1.5e-38  Score=323.30  Aligned_cols=318  Identities=24%  Similarity=0.255  Sum_probs=224.3

Q ss_pred             ccccccccccccccccC--CCCcccccc--cCCccccccccccccc--------ccCCCCCCcEEEEcCcHHHHHHHHHH
Q 012165            3 SVSNSLSFKHGLSLWCP--QSPSLHRIR--HSSAKNFQRRGFVVAY--------SSFANENREFVIVGGGNAAGYAARTF   70 (469)
Q Consensus         3 ~~~~~~~~~~~~~~~~~--~~~~~~~~~--~~~~~~~~~~~~~~~~--------~~~~~~~~~vvIIGgG~AGl~aA~~L   70 (469)
                      ..+||||.+||++|+++  |+..|.+..  .++++..+.+......        .+.....++|+|||||+||+++|..|
T Consensus        80 ~~~~p~~~~~g~vc~~~~~C~~~C~~~~~~~~v~i~~l~~~~~~~~~~~~~~~~~~~~~~~~~VvIIGgGpaGl~aA~~l  159 (457)
T PRK11749         80 LETNPLPAVCGRVCPQERLCEGACVRGKKGEPVAIGRLERYITDWAMETGWVLFKRAPKTGKKVAVIGAGPAGLTAAHRL  159 (457)
T ss_pred             HHhCCchhhhcCcCCCccCHHHHhcCCCCCCCcchHHHHHHHHHHHHhcCCCCCCCCccCCCcEEEECCCHHHHHHHHHH
Confidence            47899999999999999  999999765  6677776666433211        12234568999999999999999999


Q ss_pred             HHcCCCCCcEEEEcCCCCCCCCCCCCcccccCCCCCCCCCCCCCccccCCCCCCCCHhHHHHCCcEEEeCCcEEEEeCCC
Q 012165           71 VEHGMADGRLCIVSKEAYAPYERPALTKGYLFPLDKKPARLPGFHTCVGSGGERQTPEWYKEKGIEMIYQDPVTSIDIEK  150 (469)
Q Consensus        71 ~~~g~~~~~V~vie~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~v~~id~~~  150 (469)
                      ++.|+   +|+|+|+.+.....   +.  +..+.    .+++.       +......+++++.+++++.++.+      .
T Consensus       160 ~~~g~---~V~lie~~~~~gG~---l~--~gip~----~~~~~-------~~~~~~~~~l~~~gv~~~~~~~v------~  214 (457)
T PRK11749        160 ARKGY---DVTIFEARDKAGGL---LR--YGIPE----FRLPK-------DIVDREVERLLKLGVEIRTNTEV------G  214 (457)
T ss_pred             HhCCC---eEEEEccCCCCCcE---ee--ccCCC----ccCCH-------HHHHHHHHHHHHcCCEEEeCCEE------C
Confidence            99987   79999988754211   00  00010    01110       00123446678889999988654      1


Q ss_pred             cEEEeCCCeEEEeccEEeccCCCCCcCCCCCCCCcCcEEEecCHHHHHHHH---HhhhcCCeEEEEcCChHHHHHHHHHH
Q 012165          151 QTLITNSGKLLKYGSLIVATGCTASRFPEKIGGYLPGVHYIRDVADADALI---SSLEKAKKVVVVGGGYIGMEVAAAAV  227 (469)
Q Consensus       151 ~~v~~~~g~~~~yd~lVlAtG~~~~~~~~~~g~~~~~v~~~~~~~~~~~~~---~~~~~~~~vvVvG~G~~g~e~A~~l~  227 (469)
                      +.+++++.. +.||+||||||+.....+.++|.+.+++++..+........   ..+..+++|+|||+|.+|+|+|..+.
T Consensus       215 ~~v~~~~~~-~~~d~vvlAtGa~~~~~~~i~G~~~~gv~~~~~~l~~~~~~~~~~~~~~g~~VvViGgG~~g~e~A~~l~  293 (457)
T PRK11749        215 RDITLDELR-AGYDAVFIGTGAGLPRFLGIPGENLGGVYSAVDFLTRVNQAVADYDLPVGKRVVVIGGGNTAMDAARTAK  293 (457)
T ss_pred             CccCHHHHH-hhCCEEEEccCCCCCCCCCCCCccCCCcEEHHHHHHHHhhccccccCCCCCeEEEECCCHHHHHHHHHHH
Confidence            223333333 78999999999863334556777677776653322222110   11236899999999999999999999


Q ss_pred             hCCC-eEe--------------eeHHHHHHcCcEEEcCCeEEEEEeCCCCcEEEEEcC-------------------CCC
Q 012165          228 GWKL-DTT--------------RYEQLYQQNGVKFVKGASIKNLEAGSDGRVAAVKLE-------------------DGS  273 (469)
Q Consensus       228 ~~g~-~v~--------------~~~~~l~~~gV~~~~~~~v~~i~~~~~~~v~~v~~~-------------------~g~  273 (469)
                      ++|. +|+              ...+.+++.||++++++.+.++..+ ++.+.+|.+.                   +++
T Consensus       294 ~~G~~~Vtlv~~~~~~~~~~~~~~~~~~~~~GV~i~~~~~v~~i~~~-~~~~~~v~~~~~~~~~~~~~g~~~~~~~g~~~  372 (457)
T PRK11749        294 RLGAESVTIVYRRGREEMPASEEEVEHAKEEGVEFEWLAAPVEILGD-EGRVTGVEFVRMELGEPDASGRRRVPIEGSEF  372 (457)
T ss_pred             HcCCCeEEEeeecCcccCCCCHHHHHHHHHCCCEEEecCCcEEEEec-CCceEEEEEEEEEecCcCCCCCcccCCCCceE
Confidence            9987 676              1235677899999999999999854 3332233321                   234


Q ss_pred             EEeCCEEEEccCCccCCchhh-hcCCccc-CCCEEeCC-CCCCCCCceEEeccccccCCccCCcccccchHHHHHHHHHH
Q 012165          274 TIDADTIVIGIGAKPTVSPFE-RVGLNSS-VGGIQVDG-QFRTRMPGIFAIGDVAAFPLKMYDRTARVEHVDHARQSAQH  350 (469)
Q Consensus       274 ~i~~D~vi~a~G~~p~~~~~~-~~gl~~~-~g~i~Vd~-~~~t~~~~Vfa~GD~a~~~~~~~~~~~~~~~~~~A~~~a~~  350 (469)
                      ++++|.||+++|.+|+..++. ..++..+ +|+|.||+ +++|+.|+|||+|||+..+.          .+..|+.+|+.
T Consensus       373 ~i~~D~vi~a~G~~p~~~l~~~~~gl~~~~~g~i~vd~~~~~Ts~~~VfA~GD~~~~~~----------~~~~A~~~G~~  442 (457)
T PRK11749        373 TLPADLVIKAIGQTPNPLILSTTPGLELNRWGTIIADDETGRTSLPGVFAGGDIVTGAA----------TVVWAVGDGKD  442 (457)
T ss_pred             EEECCEEEECccCCCCchhhccccCccCCCCCCEEeCCCCCccCCCCEEEeCCcCCCch----------HHHHHHHHHHH
Confidence            799999999999999977754 4566654 57899998 89999999999999995321          45679999999


Q ss_pred             HHHHHhc
Q 012165          351 CIKALLS  357 (469)
Q Consensus       351 ~a~~i~~  357 (469)
                      +|.+|..
T Consensus       443 aA~~I~~  449 (457)
T PRK11749        443 AAEAIHE  449 (457)
T ss_pred             HHHHHHH
Confidence            9988864

>PRK12810 gltD glutamate synthase subunit beta; Reviewed

Probab=100.00  E-value=3.1e-38  Score=321.43  Aligned_cols=318  Identities=22%  Similarity=0.269  Sum_probs=228.5

Q ss_pred             ccccccccccccccccCCCCcccccc--cCCccccccccccccc-------c--cCCCCCCcEEEEcCcHHHHHHHHHHH
Q 012165            3 SVSNSLSFKHGLSLWCPQSPSLHRIR--HSSAKNFQRRGFVVAY-------S--SFANENREFVIVGGGNAAGYAARTFV   71 (469)
Q Consensus         3 ~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~-------~--~~~~~~~~vvIIGgG~AGl~aA~~L~   71 (469)
                      .++||||.+||++|+++|+..|+|..  .+++++.+.|+..+..       +  +.....++|+|||||+||+++|..|+
T Consensus        84 ~~~~p~~~~~g~vC~~~Ce~~C~~~~~~~~v~i~~l~r~~~~~~~~~~~~~~~~~~~~~~~~VvIIGaGpAGl~aA~~l~  163 (471)
T PRK12810         84 HQTNNFPEFTGRVCPAPCEGACTLNINFGPVTIKNIERYIIDKAFEEGWVKPDPPVKRTGKKVAVVGSGPAGLAAADQLA  163 (471)
T ss_pred             HHhCChhHHhcCcCCchhHHhccCCCCCCCccHHHHHHHHHHHHHHcCCCCCCCCcCCCCCEEEEECcCHHHHHHHHHHH
Confidence            47899999999999999999999986  8899998988765431       1  12234579999999999999999999


Q ss_pred             HcCCCCCcEEEEcCCCCCCCCCCCCcccccCCCCCCCCCCCCCccccCCCCCCCCHhHHHHCCcEEEeCCcEEEEeCCCc
Q 012165           72 EHGMADGRLCIVSKEAYAPYERPALTKGYLFPLDKKPARLPGFHTCVGSGGERQTPEWYKEKGIEMIYQDPVTSIDIEKQ  151 (469)
Q Consensus        72 ~~g~~~~~V~vie~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~v~~id~~~~  151 (469)
                      +.|+   +|+|+|+++.+...   +.  +-.+    ..+++.       .......+++.+.|++++.++.+. .+... 
T Consensus       164 ~~G~---~V~vie~~~~~GG~---l~--~gip----~~~~~~-------~~~~~~~~~~~~~gv~~~~~~~v~-~~~~~-  222 (471)
T PRK12810        164 RAGH---KVTVFERADRIGGL---LR--YGIP----DFKLEK-------EVIDRRIELMEAEGIEFRTNVEVG-KDITA-  222 (471)
T ss_pred             hCCC---cEEEEecCCCCCce---ee--ecCC----cccCCH-------HHHHHHHHHHHhCCcEEEeCCEEC-CcCCH-
Confidence            9987   79999998764311   00  0000    001100       001223467788999999986542 22111 


Q ss_pred             EEEeCCCeEEEeccEEeccCCCCCcCCCCCCCCcCcEEEecCHHHHH--HHHH------hhhcCCeEEEEcCChHHHHHH
Q 012165          152 TLITNSGKLLKYGSLIVATGCTASRFPEKIGGYLPGVHYIRDVADAD--ALIS------SLEKAKKVVVVGGGYIGMEVA  223 (469)
Q Consensus       152 ~v~~~~g~~~~yd~lVlAtG~~~~~~~~~~g~~~~~v~~~~~~~~~~--~~~~------~~~~~~~vvVvG~G~~g~e~A  223 (469)
                           +.....||+||+|||+.+...+.++|.+.+++++..++....  .+..      ....+++|+|||+|++|+|+|
T Consensus       223 -----~~~~~~~d~vvlAtGa~~~~~l~ipG~~~~gV~~~~~~l~~~~~~~~~~~~~~~~~~~gk~VvVIGgG~~g~e~A  297 (471)
T PRK12810        223 -----EELLAEYDAVFLGTGAYKPRDLGIPGRDLDGVHFAMDFLIQNTRRVLGDETEPFISAKGKHVVVIGGGDTGMDCV  297 (471)
T ss_pred             -----HHHHhhCCEEEEecCCCCCCcCCCCCccCCCcEEHHHHHHHHHhhhccccccccccCCCCEEEEECCcHHHHHHH
Confidence                 111257999999999983334566787778887653322111  1111      124579999999999999999


Q ss_pred             HHHHhCCC-eEe-----------e-------------eHHHHHHcCcEEEcCCeEEEEEeCCCCcEEEEEcC-----CC-
Q 012165          224 AAAVGWKL-DTT-----------R-------------YEQLYQQNGVKFVKGASIKNLEAGSDGRVAAVKLE-----DG-  272 (469)
Q Consensus       224 ~~l~~~g~-~v~-----------~-------------~~~~l~~~gV~~~~~~~v~~i~~~~~~~v~~v~~~-----~g-  272 (469)
                      ..+.++|. +|+           .             ..+.+++.||+++++..++++.. +++++.+|++.     +| 
T Consensus       298 ~~~~~~ga~~Vt~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~GV~i~~~~~~~~i~~-~~g~v~~V~~~~~~~~~g~  376 (471)
T PRK12810        298 GTAIRQGAKSVTQRDIMPMPPSRRNKNNPWPYWPMKLEVSNAHEEGVEREFNVQTKEFEG-ENGKVTGVKVVRTELGEGD  376 (471)
T ss_pred             HHHHHcCCCeEEEccccCCCccccccccCCcccchHHHHHHHHHcCCeEEeccCceEEEc-cCCEEEEEEEEEEEecCCC
Confidence            98888875 455           1             24556789999999999999973 46666655432     22 


Q ss_pred             --------CEEeCCEEEEccCCccCC-chhhhcCCccc-CCCEEeC-CCCCCCCCceEEeccccccCCccCCcccccchH
Q 012165          273 --------STIDADTIVIGIGAKPTV-SPFERVGLNSS-VGGIQVD-GQFRTRMPGIFAIGDVAAFPLKMYDRTARVEHV  341 (469)
Q Consensus       273 --------~~i~~D~vi~a~G~~p~~-~~~~~~gl~~~-~g~i~Vd-~~~~t~~~~Vfa~GD~a~~~~~~~~~~~~~~~~  341 (469)
                              +++++|.||+|+|.+|+. .++++++++.+ +|.+.+| ++++|+.|+|||+|||+..+.          .+
T Consensus       377 ~~~~~g~~~~i~~D~VI~A~G~~p~~~~l~~~~gl~~~~~g~i~vd~~~~~Ts~~gVfa~GD~~~g~~----------~~  446 (471)
T PRK12810        377 FEPVEGSEFVLPADLVLLAMGFTGPEAGLLAQFGVELDERGRVAAPDNAYQTSNPKVFAAGDMRRGQS----------LV  446 (471)
T ss_pred             ccccCCceEEEECCEEEECcCcCCCchhhccccCcccCCCCCEEeCCCcccCCCCCEEEccccCCCch----------hH
Confidence                    479999999999999985 47888888776 5779998 799999999999999997432          34


Q ss_pred             HHHHHHHHHHHHHHhc
Q 012165          342 DHARQSAQHCIKALLS  357 (469)
Q Consensus       342 ~~A~~~a~~~a~~i~~  357 (469)
                      ..|+.+|+.+|.+|..
T Consensus       447 ~~Av~~G~~AA~~i~~  462 (471)
T PRK12810        447 VWAIAEGRQAARAIDA  462 (471)
T ss_pred             HHHHHHHHHHHHHHHH
Confidence            5688889998888753

>TIGR03385 CoA_CoA_reduc CoA-disulfide reductase

Probab=100.00  E-value=2.5e-36  Score=305.27  Aligned_cols=352  Identities=20%  Similarity=0.295  Sum_probs=255.1

Q ss_pred             HHHHHHHHcCCCCCcEEEEcCCCCCCCCCCCCcccccCCCCCCCCCCCCCccccCCCCCCCC-HhHHHHCCcEEEeCCcE
Q 012165           65 YAARTFVEHGMADGRLCIVSKEAYAPYERPALTKGYLFPLDKKPARLPGFHTCVGSGGERQT-PEWYKEKGIEMIYQDPV  143 (469)
Q Consensus        65 ~aA~~L~~~g~~~~~V~vie~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~i~~~~~~~v  143 (469)
                      +||.+|++.+. +.+|||||+++.+.|....++. +..+.......+           .... .+++.+.+++++.+++|
T Consensus         1 saA~~l~~~~~-~~~Vtlid~~~~~~~~~~~l~~-~~~g~~~~~~~~-----------~~~~~~~~~~~~gv~~~~~~~V   67 (427)
T TIGR03385         1 SAASRVRRLDK-ESDIIVFEKTEDVSFANCGLPY-VIGGVIDDRNKL-----------LAYTPEVFIKKRGIDVKTNHEV   67 (427)
T ss_pred             CHHHHHHhhCC-CCcEEEEEcCCceeEEcCCCCe-EeccccCCHHHc-----------ccCCHHHHHHhcCCeEEecCEE
Confidence            47899998764 6799999999988776433432 221111100000           1122 34558899999888899


Q ss_pred             EEEeCCCcEEEeCC---CeEEE--eccEEeccCCCCCcCCCCCCCCcCcEEEecCHHHHHHHHHhh--hcCCeEEEEcCC
Q 012165          144 TSIDIEKQTLITNS---GKLLK--YGSLIVATGCTASRFPEKIGGYLPGVHYIRDVADADALISSL--EKAKKVVVVGGG  216 (469)
Q Consensus       144 ~~id~~~~~v~~~~---g~~~~--yd~lVlAtG~~~~~~~~~~g~~~~~v~~~~~~~~~~~~~~~~--~~~~~vvVvG~G  216 (469)
                      +.+|++++++.+.+   ++++.  ||+||||||++|. .|.++|.+.+++++.+++.++..++..+  ..+++++|||+|
T Consensus        68 ~~id~~~~~v~~~~~~~~~~~~~~yd~lIiATG~~p~-~~~i~G~~~~~v~~~~~~~~~~~~~~~l~~~~~~~vvViGgG  146 (427)
T TIGR03385        68 IEVNDERQTVVVRNNKTNETYEESYDYLILSPGASPI-VPNIEGINLDIVFTLRNLEDTDAIKQYIDKNKVENVVIIGGG  146 (427)
T ss_pred             EEEECCCCEEEEEECCCCCEEecCCCEEEECCCCCCC-CCCCCCcCCCCEEEECCHHHHHHHHHHHhhcCCCeEEEECCC
Confidence            99999988887753   34677  9999999999987 4667776667788888888887777665  457899999999


Q ss_pred             hHHHHHHHHHHhCCCeEe-------------------eeHHHHHHcCcEEEcCCeEEEEEeCCCCcEEEEEcCCCCEEeC
Q 012165          217 YIGMEVAAAAVGWKLDTT-------------------RYEQLYQQNGVKFVKGASIKNLEAGSDGRVAAVKLEDGSTIDA  277 (469)
Q Consensus       217 ~~g~e~A~~l~~~g~~v~-------------------~~~~~l~~~gV~~~~~~~v~~i~~~~~~~v~~v~~~~g~~i~~  277 (469)
                      ++|+|+|..|+++|.+++                   .+.+.+++.||++++++.+++++.  ++.+  +.+.+|+++++
T Consensus       147 ~~g~e~A~~l~~~g~~Vtli~~~~~~~~~~~~~~~~~~~~~~l~~~gV~v~~~~~v~~i~~--~~~~--v~~~~g~~i~~  222 (427)
T TIGR03385       147 YIGIEMAEALRERGKNVTLIHRSERILNKLFDEEMNQIVEEELKKHEINLRLNEEVDSIEG--EERV--KVFTSGGVYQA  222 (427)
T ss_pred             HHHHHHHHHHHhCCCcEEEEECCcccCccccCHHHHHHHHHHHHHcCCEEEeCCEEEEEec--CCCE--EEEcCCCEEEe
Confidence            999999999999998887                   235677889999999999999974  3333  45678889999


Q ss_pred             CEEEEccCCccCCchhhhcCCccc-CCCEEeCCCCCCCCCceEEeccccccCCccCCcccccchHHHHHHHHHHHHHHHh
Q 012165          278 DTIVIGIGAKPTVSPFERVGLNSS-VGGIQVDGQFRTRMPGIFAIGDVAAFPLKMYDRTARVEHVDHARQSAQHCIKALL  356 (469)
Q Consensus       278 D~vi~a~G~~p~~~~~~~~gl~~~-~g~i~Vd~~~~t~~~~Vfa~GD~a~~~~~~~~~~~~~~~~~~A~~~a~~~a~~i~  356 (469)
                      |.+|+++|.+|++++++++++..+ +|+|.||+++||+.|+|||+|||+..+....+.......+..|..||+.+|+||+
T Consensus       223 D~vi~a~G~~p~~~~l~~~gl~~~~~G~i~vd~~~~t~~~~Vya~GD~~~~~~~~~~~~~~~~~~~~A~~~g~~~a~ni~  302 (427)
T TIGR03385       223 DMVILATGIKPNSELAKDSGLKLGETGAIWVNEKFQTSVPNIYAAGDVAESHNIITKKPAWVPLAWGANKMGRIAGENIA  302 (427)
T ss_pred             CEEEECCCccCCHHHHHhcCcccCCCCCEEECCCcEeCCCCEEEeeeeEEeeeccCCCceeeechHHHHHHHHHHHHHhc
Confidence            999999999999999999998875 5789999999999999999999998765443332223467789999999999998


Q ss_pred             cCCCCCCCCC-CceeeecccccCCCcceeeEEeecCCC-------cE--EEEcc---------CCCcEEEEEEe--CCEE
Q 012165          357 SAQTHTYDYL-PYFYSRVFEYEGSPRKVWWQFFGDNVG-------ET--IEIGN---------FDPKIATFWID--SGKL  415 (469)
Q Consensus       357 ~~~~~~~~~~-p~~~~~~~~~~g~~~~~~~~~~G~~~~-------~~--~~~~~---------~~~~~~~~~~~--~~~l  415 (469)
                      +. ...+... +..++..++++       +..+|....       +.  .....         ...-+.|++++  +++|
T Consensus       303 g~-~~~~~~~~~~~~~~~~~~~-------~a~vG~t~~~a~~~g~~~~~~~~~~~~~~~~~~~~~~g~~kli~~~~~~~i  374 (427)
T TIGR03385       303 GN-DIEFKGVLGTNITKFFDLT-------IASTGVTENEAKKLNIDYKTVFVKAKTHANYYPGNSPLHLKLIYEKDTRRI  374 (427)
T ss_pred             CC-CCCCCCcceeeEEEEcCeE-------EEEecCCHHHHHHCCCCeEEEEEecCCCCCcCCCCceEEEEEEEECCCCeE
Confidence            64 3445432 23233333332       556665432       11  11100         01126777774  5999


Q ss_pred             EEEEeecCC-hHHhH-HHHHHHhCCCCCC
Q 012165          416 KGVLVESGS-PEEFQ-LLPTLARSQPFVD  442 (469)
Q Consensus       416 ~g~~~~~~~-~~~~~-~~~~~~~~~~~~~  442 (469)
                      +|+++++.+ +.++. .+..+|+.+.+++
T Consensus       375 lG~~~~g~~~a~e~i~~~~~ai~~~~t~~  403 (427)
T TIGR03385       375 LGAQAVGKEGADKRIDVLAAAIMAGLTVK  403 (427)
T ss_pred             EEEEEEccccHHHHHHHHHHHHHCCCCHH
Confidence            999987777 65544 4555677777666

Members of this protein family are CoA-disulfide reductase (EC 1.8.1.14), as characterized in Staphylococcus aureus, Pyrococcus horikoshii, and Borrelia burgdorferi, and inferred in several other species on the basis of high levels of CoA and an absence of glutathione as a protective thiol.

>PRK06912 acoL dihydrolipoamide dehydrogenase; Validated

Probab=100.00  E-value=1.2e-36  Score=309.51  Aligned_cols=380  Identities=17%  Similarity=0.209  Sum_probs=247.9

Q ss_pred             cEEEEcCcHHHHHHHHHHHHcCCCCCcEEEEcCCCCCC--CCC-CCCcccccC--------------CC----CCCCCCC
Q 012165           53 EFVIVGGGNAAGYAARTFVEHGMADGRLCIVSKEAYAP--YER-PALTKGYLF--------------PL----DKKPARL  111 (469)
Q Consensus        53 ~vvIIGgG~AGl~aA~~L~~~g~~~~~V~vie~~~~~~--~~~-~~l~~~~~~--------------~~----~~~~~~~  111 (469)
                      +|+|||||+||++||..+++.|.   +|+|||+++..+  .++ +--+|.++.              +.    .....++
T Consensus         2 ~vvVIG~G~aG~~aA~~~~~~g~---~V~lie~~~~GG~c~n~gciPsk~l~~~a~~~~~~~~~~~~g~~~~~~~~~~~~   78 (458)
T PRK06912          2 KLVVIGGGPAGYVAAITAAQNGK---NVTLIDEADLGGTCLNEGCMPTKSLLESAEVHDKVKKANHFGITLPNGSISIDW   78 (458)
T ss_pred             eEEEECCCHHHHHHHHHHHhCCC---cEEEEECCcccccCCCCccccchHHHHHHHHHHHHHHHHhcCccccCCCCccCH
Confidence            79999999999999999999987   799999875321  011 111221110              00    0000011


Q ss_pred             CCCcccc---CCCCCCCCHhHHHHCCcEEEeCCcEEEEeCCCcEEEeCCC-eEEEeccEEeccCCCCCcCCCCCCCCcCc
Q 012165          112 PGFHTCV---GSGGERQTPEWYKEKGIEMIYQDPVTSIDIEKQTLITNSG-KLLKYGSLIVATGCTASRFPEKIGGYLPG  187 (469)
Q Consensus       112 ~~~~~~~---~~~~~~~~~~~~~~~~i~~~~~~~v~~id~~~~~v~~~~g-~~~~yd~lVlAtG~~~~~~~~~~g~~~~~  187 (469)
                      ..+....   ...........++..+++++.+ ++..++.....|..+++ .+++||+||||||++|+.+| +++.+.+.
T Consensus        79 ~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~g-~a~~~~~~~v~v~~~~~~~~~~~d~lviATGs~p~~~p-~~~~~~~~  156 (458)
T PRK06912         79 KQMQARKSQIVTQLVQGIQYLMKKNKIKVIQG-KASFETDHRVRVEYGDKEEVVDAEQFIIAAGSEPTELP-FAPFDGKW  156 (458)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHhhCCcEEEEE-EEEEccCCEEEEeeCCCcEEEECCEEEEeCCCCCCCCC-CCCCCCCe
Confidence            0000000   0000001122345678999886 66667765556665555 46999999999999987444 34433333


Q ss_pred             EEEecCHHHHHHHHHhhhcCCeEEEEcCChHHHHHHHHHHhCCCeEe------------------eeHHHHHHcCcEEEc
Q 012165          188 VHYIRDVADADALISSLEKAKKVVVVGGGYIGMEVAAAAVGWKLDTT------------------RYEQLYQQNGVKFVK  249 (469)
Q Consensus       188 v~~~~~~~~~~~~~~~~~~~~~vvVvG~G~~g~e~A~~l~~~g~~v~------------------~~~~~l~~~gV~~~~  249 (469)
                      +++.      .........+++++|||+|++|+|+|..+.++|.+|+                  .+.+.+++.||++++
T Consensus       157 v~~~------~~~~~~~~~~~~vvIIGgG~iG~E~A~~l~~~g~~Vtli~~~~~ll~~~d~e~~~~l~~~L~~~GI~i~~  230 (458)
T PRK06912        157 IINS------KHAMSLPSIPSSLLIVGGGVIGCEFASIYSRLGTKVTIVEMAPQLLPGEDEDIAHILREKLENDGVKIFT  230 (458)
T ss_pred             EEcc------hHHhCccccCCcEEEECCCHHHHHHHHHHHHcCCeEEEEecCCCcCccccHHHHHHHHHHHHHCCCEEEE
Confidence            3322      2222323457899999999999999999999999887                  345678889999999


Q ss_pred             CCeEEEEEeCCCCcEEEEEcCCC--CEEeCCEEEEccCCccCCch--hhhcCCcccCCCEEeCCCCCCCCCceEEecccc
Q 012165          250 GASIKNLEAGSDGRVAAVKLEDG--STIDADTIVIGIGAKPTVSP--FERVGLNSSVGGIQVDGQFRTRMPGIFAIGDVA  325 (469)
Q Consensus       250 ~~~v~~i~~~~~~~v~~v~~~~g--~~i~~D~vi~a~G~~p~~~~--~~~~gl~~~~g~i~Vd~~~~t~~~~Vfa~GD~a  325 (469)
                      ++++++++.+ +..+ .+.. +|  +++++|.||+++|.+|+++.  ++..++..+++++.||+++||+.|||||+|||+
T Consensus       231 ~~~V~~i~~~-~~~v-~~~~-~g~~~~i~~D~vivA~G~~p~~~~l~l~~~gv~~~~~gi~Vd~~~~ts~~~VyA~GD~~  307 (458)
T PRK06912        231 GAALKGLNSY-KKQA-LFEY-EGSIQEVNAEFVLVSVGRKPRVQQLNLEKAGVQFSNKGISVNEHMQTNVPHIYACGDVI  307 (458)
T ss_pred             CCEEEEEEEc-CCEE-EEEE-CCceEEEEeCEEEEecCCccCCCCCCchhcCceecCCCEEeCCCeecCCCCEEEEeecC
Confidence            9999999753 2222 2332 34  36999999999999999875  467788776667999999999999999999999


Q ss_pred             ccCCccCCcccccchHHHHHHHHHHHHHHHhcCCC-CCCCCCCceeeecccccCCCcceeeEEeecCCC-------cEEE
Q 012165          326 AFPLKMYDRTARVEHVDHARQSAQHCIKALLSAQT-HTYDYLPYFYSRVFEYEGSPRKVWWQFFGDNVG-------ETIE  397 (469)
Q Consensus       326 ~~~~~~~~~~~~~~~~~~A~~~a~~~a~~i~~~~~-~~~~~~p~~~~~~~~~~g~~~~~~~~~~G~~~~-------~~~~  397 (469)
                      ..+.          ....|..+|+.+|.+|.+... ..+..+|..   .|..+.      +..+|.+..       +...
T Consensus       308 ~~~~----------la~~A~~~g~~aa~~~~g~~~~~~~~~~p~~---v~~~p~------~a~vGlte~~a~~~g~~~~~  368 (458)
T PRK06912        308 GGIQ----------LAHVAFHEGTTAALHASGEDVKVNYHAVPRC---IYTSPE------IASVGLTEKQAREQYGDIRI  368 (458)
T ss_pred             CCcc----------cHHHHHHHHHHHHHHHcCCCCCCCcCCCCeE---EecCch------hEEeeCCHHHHHHCCCCeEE
Confidence            6432          344599999999999986432 224556642   232111      233443221       1111


Q ss_pred             Ec-cC-----------CCcEEEEEEe--CCEEEEEEeecCChHHhHH-HHHHHhCCCCCCh--hhhcCCCcHHHHHHHHH
Q 012165          398 IG-NF-----------DPKIATFWID--SGKLKGVLVESGSPEEFQL-LPTLARSQPFVDK--AKLQQASSVEEALEIAR  460 (469)
Q Consensus       398 ~~-~~-----------~~~~~~~~~~--~~~l~g~~~~~~~~~~~~~-~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~  460 (469)
                      .. .+           ...+.|++++  +++|+|++++++++.++.. +..+|+.+.+++.  ..+..||++.|+++.|+
T Consensus       369 ~~~~~~~~~~~~~~~~~~g~~kli~d~~~~~ilG~~~~g~~a~e~i~~~~~ai~~~~t~~~l~~~~~~hPt~~e~~~~~~  448 (458)
T PRK06912        369 GEFPFTANGKALIIGEQTGKVKVIVEPKYQEIVGISIIGPRATELIGQGTVMIHTEVTADIMEDFIAAHPTLSEAIHEAL  448 (458)
T ss_pred             EEEecCcchhHhhcCCCceEEEEEEECCCCEEEEEEEECCCHHHHHHHHHHHHHCCCCHHHHhhCcccCCCHHHHHHHHH
Confidence            00 00           1236777774  5899999987777765444 4556788887762  33568999999999998


Q ss_pred             hcCCc
Q 012165          461 AALPV  465 (469)
Q Consensus       461 ~~~~~  465 (469)
                      +.+..
T Consensus       449 ~~~~~  453 (458)
T PRK06912        449 LQAVG  453 (458)
T ss_pred             HHhhc
Confidence            76543

>TIGR01438 TGR thioredoxin and glutathione reductase selenoprotein

Probab=100.00  E-value=5.7e-37  Score=312.12  Aligned_cols=379  Identities=20%  Similarity=0.236  Sum_probs=245.6

Q ss_pred             CCcEEEEcCcHHHHHHHHHHHHcCCCCCcEEEEcCCC--------CCCC---CCCCC-cccccCC-----CCCCCCCCCC
Q 012165           51 NREFVIVGGGNAAGYAARTFVEHGMADGRLCIVSKEA--------YAPY---ERPAL-TKGYLFP-----LDKKPARLPG  113 (469)
Q Consensus        51 ~~~vvIIGgG~AGl~aA~~L~~~g~~~~~V~vie~~~--------~~~~---~~~~l-~~~~~~~-----~~~~~~~~~~  113 (469)
                      .+|++|||+|+||+.+|..+++.|.   +|++||+..        ..+.   ++-.. +|.++..     .......+ +
T Consensus         2 ~yDvvVIG~G~aG~~aA~~aa~~G~---~v~lie~~~~~~~~~~~~~GGtc~n~GCiPsK~l~~~a~~~~~~~~~~~~-g   77 (484)
T TIGR01438         2 DYDLIVIGGGSGGLAAAKEAADYGA---KVMLLDFVTPTPLGTRWGIGGTCVNVGCIPKKLMHQAALLGQALKDSRNY-G   77 (484)
T ss_pred             ccCEEEECCCHHHHHHHHHHHHCCC---eEEEEeccCCCCCCcceeccccccccCcCchhHHHHHHHHHHHHhhhhhc-C
Confidence            4799999999999999999999987   799999631        0110   11111 1111100     00000000 0


Q ss_pred             Cccc--cCCC--------------CCCCCHhHHHHCCcEEEeCCcEEEEeCCCcEEEeCCC--eEEEeccEEeccCCCCC
Q 012165          114 FHTC--VGSG--------------GERQTPEWYKEKGIEMIYQDPVTSIDIEKQTLITNSG--KLLKYGSLIVATGCTAS  175 (469)
Q Consensus       114 ~~~~--~~~~--------------~~~~~~~~~~~~~i~~~~~~~v~~id~~~~~v~~~~g--~~~~yd~lVlAtG~~~~  175 (469)
                      +...  ...+              ........++..+++++.+ ....+++..-.|...++  ..+.||+||||||++|+
T Consensus        78 ~~~~~~~~~d~~~~~~~~~~~v~~~~~~~~~~~~~~~v~~i~G-~a~f~~~~~v~v~~~~g~~~~~~~d~lVIATGs~p~  156 (484)
T TIGR01438        78 WNVEETVKHDWNRLSEAVQNHIGSLNWGYRVALREKKVNYENA-YAEFVDKHRIKATNKKGKEKIYSAERFLIATGERPR  156 (484)
T ss_pred             cccCCCcccCHHHHHHHHHHHHHHHHHHHHHHHhhCCcEEEEE-EEEEcCCCEEEEeccCCCceEEEeCEEEEecCCCCC
Confidence            0000  0000              0011223466779999986 55556654333332333  36999999999999997


Q ss_pred             cCCCCCCCCcCcEEEecCHHHHHHHHHhhhcCCeEEEEcCChHHHHHHHHHHhCCCeEe-----------------eeHH
Q 012165          176 RFPEKIGGYLPGVHYIRDVADADALISSLEKAKKVVVVGGGYIGMEVAAAAVGWKLDTT-----------------RYEQ  238 (469)
Q Consensus       176 ~~~~~~g~~~~~v~~~~~~~~~~~~~~~~~~~~~vvVvG~G~~g~e~A~~l~~~g~~v~-----------------~~~~  238 (469)
                       .|+++|...    ...   +.+.+......+++++|||+|++|+|+|..|+++|.+|+                 .+++
T Consensus       157 -~p~ipG~~~----~~~---~~~~~~~~~~~~~~vvIIGgG~iG~E~A~~l~~~G~~Vtli~~~~~l~~~d~~~~~~l~~  228 (484)
T TIGR01438       157 -YPGIPGAKE----LCI---TSDDLFSLPYCPGKTLVVGASYVALECAGFLAGIGLDVTVMVRSILLRGFDQDCANKVGE  228 (484)
T ss_pred             -CCCCCCccc----eee---cHHHhhcccccCCCEEEECCCHHHHHHHHHHHHhCCcEEEEEecccccccCHHHHHHHHH
Confidence             455555321    111   233333333456899999999999999999999999988                 4456


Q ss_pred             HHHHcCcEEEcCCeEEEEEeCCCCcEEEEEcCCC---CEEeCCEEEEccCCccCCch--hhhcCCccc--CCCEEeCCCC
Q 012165          239 LYQQNGVKFVKGASIKNLEAGSDGRVAAVKLEDG---STIDADTIVIGIGAKPTVSP--FERVGLNSS--VGGIQVDGQF  311 (469)
Q Consensus       239 ~l~~~gV~~~~~~~v~~i~~~~~~~v~~v~~~~g---~~i~~D~vi~a~G~~p~~~~--~~~~gl~~~--~g~i~Vd~~~  311 (469)
                      .|++.||++++++.+.+++..+ +.+ .+++.++   +++++|.||+++|++||+++  +++.+++.+  +|+|.||+++
T Consensus       229 ~L~~~gV~i~~~~~v~~v~~~~-~~~-~v~~~~~~~~~~i~~D~vl~a~G~~pn~~~l~l~~~gv~~~~~~G~I~Vd~~~  306 (484)
T TIGR01438       229 HMEEHGVKFKRQFVPIKVEQIE-AKV-KVTFTDSTNGIEEEYDTVLLAIGRDACTRKLNLENVGVKINKKTGKIPADEEE  306 (484)
T ss_pred             HHHHcCCEEEeCceEEEEEEcC-CeE-EEEEecCCcceEEEeCEEEEEecCCcCCCcCCcccccceecCcCCeEecCCCc
Confidence            7889999999999999998543 332 4566555   37999999999999999986  567888765  3779999999


Q ss_pred             CCCCCceEEeccccccCCccCCcccccchHHHHHHHHHHHHHHHhcCCC--CCCCCCCceeeecccccCCCcceeeEEee
Q 012165          312 RTRMPGIFAIGDVAAFPLKMYDRTARVEHVDHARQSAQHCIKALLSAQT--HTYDYLPYFYSRVFEYEGSPRKVWWQFFG  389 (469)
Q Consensus       312 ~t~~~~Vfa~GD~a~~~~~~~~~~~~~~~~~~A~~~a~~~a~~i~~~~~--~~~~~~p~~~~~~~~~~g~~~~~~~~~~G  389 (469)
                      ||+.|+|||+|||+.....         ....|..+|+.+|+||++...  ..+..+|+.   .|..+-      +..+|
T Consensus       307 ~Ts~p~IyA~GDv~~~~~~---------l~~~A~~~g~~aa~~i~~~~~~~~~~~~~p~~---i~~~p~------ia~vG  368 (484)
T TIGR01438       307 QTNVPYIYAVGDILEDKQE---------LTPVAIQAGRLLAQRLFSGSTVICDYENVPTT---VFTPLE------YGACG  368 (484)
T ss_pred             ccCCCCEEEEEEecCCCcc---------chHHHHHHHHHHHHHHhcCCCcccccccCCeE---EeCCCc------eeeec
Confidence            9999999999999963211         334599999999999986432  235556642   333221      33344


Q ss_pred             cCCC---------cEE-EEccC-------------CCcEEEEEE-e--CCEEEEEEeecCChHHhHH-HHHHHhCCCCCC
Q 012165          390 DNVG---------ETI-EIGNF-------------DPKIATFWI-D--SGKLKGVLVESGSPEEFQL-LPTLARSQPFVD  442 (469)
Q Consensus       390 ~~~~---------~~~-~~~~~-------------~~~~~~~~~-~--~~~l~g~~~~~~~~~~~~~-~~~~~~~~~~~~  442 (469)
                      .+..         ... ....+             ..-|.++.+ +  +++|+|+++++.++.++.. +..+|+.+.+++
T Consensus       369 lte~~a~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~g~~Kli~~~~~t~~ILG~~ivg~~a~e~I~~~a~ai~~~~t~~  448 (484)
T TIGR01438       369 LSEEKAVEKFGEENIEVFHSYFWPLEWTIPSRDNSNKCYAKAVCNRKENERVVGFHVVGPNAGEVTQGFAAALRCGLTKK  448 (484)
T ss_pred             CCHHHHHHhcCCCcEEEEEeecchhhhHhhCCCccCCcEEEEEEecCCCCeEEEEEEECCCHHHHHHHHHHHHHcCCCHH
Confidence            3221         000 00000             123566654 3  5899999987777766544 455678887776


Q ss_pred             h--hhhcCCCcHHHHHHHHHhc
Q 012165          443 K--AKLQQASSVEEALEIARAA  462 (469)
Q Consensus       443 ~--~~~~~~~~~~~~~~~~~~~  462 (469)
                      .  ..+..||++.|+++.++..
T Consensus       449 dl~~~~~~hPt~sE~~~~~~~~  470 (484)
T TIGR01438       449 DLDNTIGIHPVCAEVFTTLSVT  470 (484)
T ss_pred             HHhhhhcCCCChHHHHHHhhhh
Confidence            2  2346799999999998855

This homodimeric, FAD-containing member of the pyridine nucleotide disulfide oxidoreductase family contains a C-terminal motif Cys-SeCys-Gly, where SeCys is selenocysteine encoded by TGA (in some sequence reports interpreted as a stop codon). In some members of this subfamily, Cys-SeCys-Gly is replaced by Cys-Cys-Gly. The reach of the selenium atom at the C-term arm of the protein is proposed to allow broad substrate specificity.

>TIGR01350 lipoamide_DH dihydrolipoamide dehydrogenase

Probab=100.00  E-value=2e-36  Score=309.02  Aligned_cols=384  Identities=21%  Similarity=0.283  Sum_probs=250.3

Q ss_pred             CCcEEEEcCcHHHHHHHHHHHHcCCCCCcEEEEcCCCCCCCC---CCCC-cccccCCC------------C----CCCCC
Q 012165           51 NREFVIVGGGNAAGYAARTFVEHGMADGRLCIVSKEAYAPYE---RPAL-TKGYLFPL------------D----KKPAR  110 (469)
Q Consensus        51 ~~~vvIIGgG~AGl~aA~~L~~~g~~~~~V~vie~~~~~~~~---~~~l-~~~~~~~~------------~----~~~~~  110 (469)
                      ++||+|||||+||++||.+|++.|.   +|+|||+ +.++..   +... ++.++...            .    ....+
T Consensus         1 ~yDvvVIG~G~aGl~aA~~la~~G~---~v~lie~-~~~GG~~~~~gc~Psk~l~~~~~~~~~~~~~~~~g~~~~~~~~~   76 (461)
T TIGR01350         1 AYDVVVIGGGPGGYVAAIRAAQLGL---KVALVEK-EYLGGTCLNVGCIPTKALLHSAEVYDEIKHAKDYGIEVENVSVD   76 (461)
T ss_pred             CccEEEECCCHHHHHHHHHHHhCCC---eEEEEec-CCCCCceeecCccchHHHHHHhhHHHHHHHHHhcCCCCCCCcCC
Confidence            3899999999999999999999987   7999998 433211   1111 11111000            0    00000


Q ss_pred             CCCCccc---cCCCCCCCCHhHHHHCCcEEEeCCcEEEEeCCCcEEEeCCC-eEEEeccEEeccCCCCCcCCCCCCCCcC
Q 012165          111 LPGFHTC---VGSGGERQTPEWYKEKGIEMIYQDPVTSIDIEKQTLITNSG-KLLKYGSLIVATGCTASRFPEKIGGYLP  186 (469)
Q Consensus       111 ~~~~~~~---~~~~~~~~~~~~~~~~~i~~~~~~~v~~id~~~~~v~~~~g-~~~~yd~lVlAtG~~~~~~~~~~g~~~~  186 (469)
                      ++.+...   ...........++++.+++++.+ ++..++.....+...++ .++.||+||||||++|+.+| ++ ...+
T Consensus        77 ~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~g-~~~~~~~~~~~v~~~~g~~~~~~d~lVlAtG~~p~~~~-~~-~~~~  153 (461)
T TIGR01350        77 WEKMQKRKNKVVKKLVGGVKGLLKKNKVTVIKG-EAKFLDPGTVLVTGENGEETLTAKNIIIATGSRPRSLP-GP-FDFD  153 (461)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHhCCCEEEEE-EEEEccCCEEEEecCCCcEEEEeCEEEEcCCCCCCCCC-CC-CCCC
Confidence            0000000   00000001123445678999886 56666655555555554 47999999999999987443 33 1122


Q ss_pred             cEEEecCHHHHHHHHHhhhcCCeEEEEcCChHHHHHHHHHHhCCCeEe------------------eeHHHHHHcCcEEE
Q 012165          187 GVHYIRDVADADALISSLEKAKKVVVVGGGYIGMEVAAAAVGWKLDTT------------------RYEQLYQQNGVKFV  248 (469)
Q Consensus       187 ~v~~~~~~~~~~~~~~~~~~~~~vvVvG~G~~g~e~A~~l~~~g~~v~------------------~~~~~l~~~gV~~~  248 (469)
                      +. .+.+..+..   .....+++++|||+|.+|+|+|..|.++|.+++                  .+.+.+++.||+++
T Consensus       154 ~~-~~~~~~~~~---~~~~~~~~vvViGgG~~g~e~A~~l~~~g~~Vtli~~~~~~l~~~~~~~~~~~~~~l~~~gi~i~  229 (461)
T TIGR01350       154 GE-VVITSTGAL---NLKEVPESLVIIGGGVIGIEFASIFASLGSKVTVIEMLDRILPGEDAEVSKVVAKALKKKGVKIL  229 (461)
T ss_pred             Cc-eEEcchHHh---ccccCCCeEEEECCCHHHHHHHHHHHHcCCcEEEEEcCCCCCCCCCHHHHHHHHHHHHHcCCEEE
Confidence            32 122222322   223457899999999999999999999999887                  34566888999999


Q ss_pred             cCCeEEEEEeCCCCcEEEEEcCCC--CEEeCCEEEEccCCccCCc--hhhhcCCccc-CCCEEeCCCCCCCCCceEEecc
Q 012165          249 KGASIKNLEAGSDGRVAAVKLEDG--STIDADTIVIGIGAKPTVS--PFERVGLNSS-VGGIQVDGQFRTRMPGIFAIGD  323 (469)
Q Consensus       249 ~~~~v~~i~~~~~~~v~~v~~~~g--~~i~~D~vi~a~G~~p~~~--~~~~~gl~~~-~g~i~Vd~~~~t~~~~Vfa~GD  323 (469)
                      +++.+++++.+ ++.+ .+.+.+|  +++++|.+|+++|.+|+++  ++++.++..+ +|++.||+++||+.|+|||+||
T Consensus       230 ~~~~v~~i~~~-~~~v-~v~~~~g~~~~i~~D~vi~a~G~~p~~~~l~~~~~gl~~~~~g~i~vd~~l~t~~~~IyaiGD  307 (461)
T TIGR01350       230 TNTKVTAVEKN-DDQV-VYENKGGETETLTGEKVLVAVGRKPNTEGLGLENLGVELDERGRIVVDEYMRTNVPGIYAIGD  307 (461)
T ss_pred             eCCEEEEEEEe-CCEE-EEEEeCCcEEEEEeCEEEEecCCcccCCCCCcHhhCceECCCCcEeeCCCcccCCCCEEEeee
Confidence            99999999854 3333 3566667  5799999999999999998  5788888876 4779999999999999999999


Q ss_pred             ccccCCccCCcccccchHHHHHHHHHHHHHHHhcCCCCC--CCCCCceeeecccccCCCcceeeEEeecCCC-------c
Q 012165          324 VAAFPLKMYDRTARVEHVDHARQSAQHCIKALLSAQTHT--YDYLPYFYSRVFEYEGSPRKVWWQFFGDNVG-------E  394 (469)
Q Consensus       324 ~a~~~~~~~~~~~~~~~~~~A~~~a~~~a~~i~~~~~~~--~~~~p~~~~~~~~~~g~~~~~~~~~~G~~~~-------~  394 (469)
                      |+..+.          ....|..+|+.+|++|.+.....  +...|..  ..++..       +..+|....       +
T Consensus       308 ~~~~~~----------~~~~A~~~g~~aa~~i~~~~~~~~~~~~~~~~--~~~~~~-------~a~vG~~~~~a~~~g~~  368 (461)
T TIGR01350       308 VIGGPM----------LAHVASHEGIVAAENIAGKEPAPIDYDAVPSC--IYTDPE-------VASVGLTEEQAKEAGYD  368 (461)
T ss_pred             cCCCcc----------cHHHHHHHHHHHHHHHcCCCCCCCCCCCCCeE--EecCCc-------eEEEeCCHHHHHhCCCC
Confidence            997432          34569999999999998643323  2344432  112211       233333211       0


Q ss_pred             E--EEE----------ccCCCcEEEEEEe--CCEEEEEEeecCChHHhHH-HHHHHhCCCCCC--hhhhcCCCcHHHHHH
Q 012165          395 T--IEI----------GNFDPKIATFWID--SGKLKGVLVESGSPEEFQL-LPTLARSQPFVD--KAKLQQASSVEEALE  457 (469)
Q Consensus       395 ~--~~~----------~~~~~~~~~~~~~--~~~l~g~~~~~~~~~~~~~-~~~~~~~~~~~~--~~~~~~~~~~~~~~~  457 (469)
                      .  ...          .+....+.+++++  +++|+|+++++.++.++.. +..+|+.+.+++  ...+..+|++.|.++
T Consensus       369 ~~~~~~~~~~~~~~~~~~~~~g~~kl~~~~~~~~ilG~~~~g~~a~e~i~~~~~ai~~~~t~~~l~~~~~~~P~~~e~~~  448 (461)
T TIGR01350       369 VKIGKFPFAANGKALALGETDGFVKIIADKKTGEILGAHIIGPHATELISEAVLAMELELTVEELAKTIHPHPTLSEAIK  448 (461)
T ss_pred             eEEEEEeCccchHHHhcCCCceEEEEEEECCCCEEEEEEEECCCHHHHHHHHHHHHHCCCCHHHHhcCcccCCCHHHHHH
Confidence            0  000          0011236677664  5999999987877766554 455678888776  223567999999999


Q ss_pred             HHHhcCCcc
Q 012165          458 IARAALPVE  466 (469)
Q Consensus       458 ~~~~~~~~~  466 (469)
                      .|++++..+
T Consensus       449 ~~~~~~~~~  457 (461)
T TIGR01350       449 EAALAALGK  457 (461)
T ss_pred             HHHHHhccC
Confidence            998876543

The motif GGXCXXXGCXP near the N-terminus contains a redox-active disulfide.

>TIGR03452 mycothione_red mycothione reductase

Probab=100.00  E-value=2.9e-36  Score=305.46  Aligned_cols=376  Identities=22%  Similarity=0.280  Sum_probs=245.8

Q ss_pred             CCcEEEEcCcHHHHHHHHHHHHcCCCCCcEEEEcCCCCCC---CCCCCCcccccC--------------CC--CCCCCCC
Q 012165           51 NREFVIVGGGNAAGYAARTFVEHGMADGRLCIVSKEAYAP---YERPALTKGYLF--------------PL--DKKPARL  111 (469)
Q Consensus        51 ~~~vvIIGgG~AGl~aA~~L~~~g~~~~~V~vie~~~~~~---~~~~~l~~~~~~--------------~~--~~~~~~~  111 (469)
                      ++|++|||+|++|..||..  ..|.   +|+|||++..-+   ..-+--+|.++.              ..  .....++
T Consensus         2 ~yD~vvIG~G~~g~~aa~~--~~g~---~V~lie~~~~GGtC~n~GCiPsK~l~~~a~~~~~~~~~~~~g~~~~~~~~d~   76 (452)
T TIGR03452         2 HYDLIIIGTGSGNSIPDPR--FADK---RIAIVEKGTFGGTCLNVGCIPTKMFVYAAEVAQSIGESARLGIDAEIDSVRW   76 (452)
T ss_pred             CcCEEEECCCHHHHHHHHH--HCCC---eEEEEeCCCCCCeeeccCccchHHHHHHHHHHHHHHHhhccCeeCCCCccCH
Confidence            5899999999999998644  4565   899999865321   111111221110              00  0000111


Q ss_pred             CCCccccCC----CCCCCCHhHH---HHCCcEEEeCCcEEEEeCCCcEEEeCCCeEEEeccEEeccCCCCCcCCCCCCCC
Q 012165          112 PGFHTCVGS----GGERQTPEWY---KEKGIEMIYQDPVTSIDIEKQTLITNSGKLLKYGSLIVATGCTASRFPEKIGGY  184 (469)
Q Consensus       112 ~~~~~~~~~----~~~~~~~~~~---~~~~i~~~~~~~v~~id~~~~~v~~~~g~~~~yd~lVlAtG~~~~~~~~~~g~~  184 (469)
                      .........    ........+.   ++.+++++.+..+..   +.++|.+.+|+++.||+||||||++|.. |+..+  
T Consensus        77 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gv~~~~g~~~~~---~~~~V~~~~g~~~~~d~lIiATGs~p~~-p~~~~--  150 (452)
T TIGR03452        77 PDIVSRVFGDRIDPIAAGGEDYRRGDETPNIDVYDGHARFV---GPRTLRTGDGEEITGDQIVIAAGSRPYI-PPAIA--  150 (452)
T ss_pred             HHHHHHhhhhHhHHHhccchHhhhhcccCCeEEEEEEEEEe---cCCEEEECCCcEEEeCEEEEEECCCCCC-CCCCC--
Confidence            111100000    0000111221   237999998754432   5678888888889999999999999974 43222  


Q ss_pred             cCcEEEecCHHHHHHHHHhhhcCCeEEEEcCChHHHHHHHHHHhCCCeEe------------------eeHHHHHHcCcE
Q 012165          185 LPGVHYIRDVADADALISSLEKAKKVVVVGGGYIGMEVAAAAVGWKLDTT------------------RYEQLYQQNGVK  246 (469)
Q Consensus       185 ~~~v~~~~~~~~~~~~~~~~~~~~~vvVvG~G~~g~e~A~~l~~~g~~v~------------------~~~~~l~~~gV~  246 (469)
                      ..++. +.+..+...+   ...+++++|||+|++|+|+|..|.++|.+|+                  .+.+ +.+.||+
T Consensus       151 ~~~~~-~~~~~~~~~l---~~~~k~vvVIGgG~ig~E~A~~l~~~G~~Vtli~~~~~ll~~~d~~~~~~l~~-~~~~gI~  225 (452)
T TIGR03452       151 DSGVR-YHTNEDIMRL---PELPESLVIVGGGYIAAEFAHVFSALGTRVTIVNRSTKLLRHLDEDISDRFTE-IAKKKWD  225 (452)
T ss_pred             CCCCE-EEcHHHHHhh---hhcCCcEEEECCCHHHHHHHHHHHhCCCcEEEEEccCccccccCHHHHHHHHH-HHhcCCE
Confidence            22332 2333444433   2357899999999999999999999999988                  2223 2346899


Q ss_pred             EEcCCeEEEEEeCCCCcEEEEEcCCCCEEeCCEEEEccCCccCCch--hhhcCCccc-CCCEEeCCCCCCCCCceEEecc
Q 012165          247 FVKGASIKNLEAGSDGRVAAVKLEDGSTIDADTIVIGIGAKPTVSP--FERVGLNSS-VGGIQVDGQFRTRMPGIFAIGD  323 (469)
Q Consensus       247 ~~~~~~v~~i~~~~~~~v~~v~~~~g~~i~~D~vi~a~G~~p~~~~--~~~~gl~~~-~g~i~Vd~~~~t~~~~Vfa~GD  323 (469)
                      +++++.+++++.++ +.+ .+.+.+|+++++|.|++++|++||+++  ++++|++.+ +|+|.||+++||++|+|||+||
T Consensus       226 i~~~~~V~~i~~~~-~~v-~v~~~~g~~i~~D~vl~a~G~~pn~~~l~~~~~gl~~~~~G~i~vd~~~~Ts~~~IyA~GD  303 (452)
T TIGR03452       226 IRLGRNVTAVEQDG-DGV-TLTLDDGSTVTADVLLVATGRVPNGDLLDAEAAGVEVDEDGRIKVDEYGRTSARGVWALGD  303 (452)
T ss_pred             EEeCCEEEEEEEcC-CeE-EEEEcCCCEEEcCEEEEeeccCcCCCCcCchhcCeeECCCCcEeeCCCcccCCCCEEEeec
Confidence            99999999998543 333 466778889999999999999999987  467788875 5779999999999999999999


Q ss_pred             ccccCCccCCcccccchHHHHHHHHHHHHHHHhcCCC---CCCCCCCceeeecccccCCCcceeeEEeecCCC-------
Q 012165          324 VAAFPLKMYDRTARVEHVDHARQSAQHCIKALLSAQT---HTYDYLPYFYSRVFEYEGSPRKVWWQFFGDNVG-------  393 (469)
Q Consensus       324 ~a~~~~~~~~~~~~~~~~~~A~~~a~~~a~~i~~~~~---~~~~~~p~~~~~~~~~~g~~~~~~~~~~G~~~~-------  393 (469)
                      |+..+.        .  ...|..||+.+|+||++...   ..+..+|..   .|..+-      +..+|.+..       
T Consensus       304 ~~~~~~--------l--~~~A~~~g~~~a~ni~~~~~~~~~~~~~~p~~---i~t~p~------ia~vGlte~ea~~~g~  364 (452)
T TIGR03452       304 VSSPYQ--------L--KHVANAEARVVKHNLLHPNDLRKMPHDFVPSA---VFTHPQ------IATVGLTEQEAREAGH  364 (452)
T ss_pred             ccCccc--------C--hhHHHHHHHHHHHHhcCCCCcccCCCCCCCeE---EECCCC------eeeeeCCHHHHHhcCC
Confidence            997542        2  23488999999999986432   234456642   332211      334454321       


Q ss_pred             cEEE-Ec-----------cCCCcEEEEEEe--CCEEEEEEeecCChHHhHHH-HHHHhCCCCCCh-hh--hcCCCcHHHH
Q 012165          394 ETIE-IG-----------NFDPKIATFWID--SGKLKGVLVESGSPEEFQLL-PTLARSQPFVDK-AK--LQQASSVEEA  455 (469)
Q Consensus       394 ~~~~-~~-----------~~~~~~~~~~~~--~~~l~g~~~~~~~~~~~~~~-~~~~~~~~~~~~-~~--~~~~~~~~~~  455 (469)
                      +... .-           .....|.|+.++  +++|+|+++++.++.++... ..+|+.+.+++. ..  +..||++.|+
T Consensus       365 ~~~~~~~~~~~~~~~~~~~~~~g~~Klv~d~~t~~ilG~~~vg~~a~e~i~~~~~ai~~~~t~~~l~~~~~~~hPt~~e~  444 (452)
T TIGR03452       365 DITVKIQNYGDVAYGWAMEDTTGFCKLIADRDTGKLLGAHIIGPQASSLIQPLITAMAFGLDAREMARKQYWIHPALPEV  444 (452)
T ss_pred             CeEEEEecCCchhhHhhcCCCCeEEEEEEECCCCEEEEEEEECCCHHHHHHHHHHHHHcCCCHHHHhhCCcccCCchHHH
Confidence            1100 00           011236677764  69999999888777655554 456788888763 33  3579999999


Q ss_pred             HHHHHhcC
Q 012165          456 LEIARAAL  463 (469)
Q Consensus       456 ~~~~~~~~  463 (469)
                      ++.|++++
T Consensus       445 ~~~a~~~~  452 (452)
T TIGR03452       445 VENALLGL  452 (452)
T ss_pred             HHHHHhcC
Confidence            99998764

Mycothiol, a glutathione analog in Mycobacterium tuberculosis and related species, can form a disulfide-linked dimer called mycothione. This enzyme can reduce mycothione to regenerate two mycothiol molecules. The enzyme shows some sequence similarity to glutathione-disulfide reductase, trypanothione-disulfide reductase, and dihydrolipoamide dehydrogenase. The characterized protein from M. tuberculosis, a homodimer, has FAD as a cofactor, one per monomer, and uses NADPH as a substrate.

>PRK12778 putative bifunctional 2-polyprenylphenol hydroxylase/glutamate synthase subunit beta; Provisional

Probab=100.00  E-value=4.7e-38  Score=336.98  Aligned_cols=320  Identities=21%  Similarity=0.244  Sum_probs=235.0

Q ss_pred             ccccccccccccccccc--CCCCcccccc---cCCccccccccccccc-------cc--CCCCCCcEEEEcCcHHHHHHH
Q 012165            2 ASVSNSLSFKHGLSLWC--PQSPSLHRIR---HSSAKNFQRRGFVVAY-------SS--FANENREFVIVGGGNAAGYAA   67 (469)
Q Consensus         2 ~~~~~~~~~~~~~~~~~--~~~~~~~~~~---~~~~~~~~~~~~~~~~-------~~--~~~~~~~vvIIGgG~AGl~aA   67 (469)
                      ..++||||.+||++|++  +|+..|.+..   .++++..++|+..+..       .+  .....++|+||||||||++||
T Consensus       368 ~~~~~p~p~~~grvC~~~~~Ce~~c~~~~~~~~~v~i~~l~r~~~d~~~~~~~~~~~~~~~~~~~~V~IIGaGpAGl~aA  447 (752)
T PRK12778        368 LKETSALPAVCGRVCPQEKQCESKCIHGKMGEEAVAIGYLERFVADYERESGNISVPEVAEKNGKKVAVIGSGPAGLSFA  447 (752)
T ss_pred             HHhhCCchhHhcCcCCCcCchHHhcccCCCCCCCcCHHHHHHHHHHHHHHhCCCCCCCCCCCCCCEEEEECcCHHHHHHH
Confidence            35789999999999997  8999999876   3788888888665321       11  124568999999999999999


Q ss_pred             HHHHHcCCCCCcEEEEcCCCCCCCCCCCCcccccCCCCCCCCCCCCCccccCCCCCCCCHhHHHHCCcEEEeCCcEEEEe
Q 012165           68 RTFVEHGMADGRLCIVSKEAYAPYERPALTKGYLFPLDKKPARLPGFHTCVGSGGERQTPEWYKEKGIEMIYQDPVTSID  147 (469)
Q Consensus        68 ~~L~~~g~~~~~V~vie~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~v~~id  147 (469)
                      .+|++.|+   +|+|+|+++.++..   +.  +-.+    ..++|.       +...+..+++++.|++++.++.+    
T Consensus       448 ~~l~~~G~---~V~v~e~~~~~GG~---l~--~gip----~~rlp~-------~~~~~~~~~l~~~gv~~~~~~~v----  504 (752)
T PRK12778        448 GDLAKRGY---DVTVFEALHEIGGV---LK--YGIP----EFRLPK-------KIVDVEIENLKKLGVKFETDVIV----  504 (752)
T ss_pred             HHHHHCCC---eEEEEecCCCCCCe---ee--ecCC----CCCCCH-------HHHHHHHHHHHHCCCEEECCCEE----
Confidence            99999998   79999987543211   00  1011    111211       00123346678889999987543    


Q ss_pred             CCCcEEEeCCCeEEEeccEEeccCCC-CCcCCCCCCCCcCcEEEecCHHHHHHHHH--------hhhcCCeEEEEcCChH
Q 012165          148 IEKQTLITNSGKLLKYGSLIVATGCT-ASRFPEKIGGYLPGVHYIRDVADADALIS--------SLEKAKKVVVVGGGYI  218 (469)
Q Consensus       148 ~~~~~v~~~~g~~~~yd~lVlAtG~~-~~~~~~~~g~~~~~v~~~~~~~~~~~~~~--------~~~~~~~vvVvG~G~~  218 (469)
                        ++.+++++.....||+||||||+. |+ .+.++|.+.+++++..++.....+..        ....+++|+|||+|++
T Consensus       505 --~~~v~~~~l~~~~ydavvlAtGa~~~~-~l~ipG~~~~gV~~~~~~l~~~~~~~~~~~~~~~~~~~gk~VvVIGgG~~  581 (752)
T PRK12778        505 --GKTITIEELEEEGFKGIFIASGAGLPN-FMNIPGENSNGVMSSNEYLTRVNLMDAASPDSDTPIKFGKKVAVVGGGNT  581 (752)
T ss_pred             --CCcCCHHHHhhcCCCEEEEeCCCCCCC-CCCCCCCCCCCcEEHHHHHHHHhhcccccccccCcccCCCcEEEECCcHH
Confidence              344555554456799999999984 65 45678888888887665443322211        1235789999999999


Q ss_pred             HHHHHHHHHhCCCe-Ee------------e--eHHHHHHcCcEEEcCCeEEEEEeCCCCcEEEEEcC---------CC--
Q 012165          219 GMEVAAAAVGWKLD-TT------------R--YEQLYQQNGVKFVKGASIKNLEAGSDGRVAAVKLE---------DG--  272 (469)
Q Consensus       219 g~e~A~~l~~~g~~-v~------------~--~~~~l~~~gV~~~~~~~v~~i~~~~~~~v~~v~~~---------~g--  272 (469)
                      |+|+|..+.++|.+ |+            .  ..+.+++.||++++++.+.++..++++++.++++.         +|  
T Consensus       582 a~d~A~~~~r~Ga~~Vtlv~r~~~~~~~~~~~e~~~~~~~GV~i~~~~~~~~i~~~~~g~v~~v~~~~~~~~~~~~~G~~  661 (752)
T PRK12778        582 AMDSARTAKRLGAERVTIVYRRSEEEMPARLEEVKHAKEEGIEFLTLHNPIEYLADEKGWVKQVVLQKMELGEPDASGRR  661 (752)
T ss_pred             HHHHHHHHHHcCCCeEEEeeecCcccCCCCHHHHHHHHHcCCEEEecCcceEEEECCCCEEEEEEEEEEEecCcCCCCCC
Confidence            99999999999987 76            1  11356788999999999999976556776666542         22  


Q ss_pred             ---------CEEeCCEEEEccCCccCCchhhhc-CCccc-CCCEEeCCCCCCCCCceEEeccccccCCccCCcccccchH
Q 012165          273 ---------STIDADTIVIGIGAKPTVSPFERV-GLNSS-VGGIQVDGQFRTRMPGIFAIGDVAAFPLKMYDRTARVEHV  341 (469)
Q Consensus       273 ---------~~i~~D~vi~a~G~~p~~~~~~~~-gl~~~-~g~i~Vd~~~~t~~~~Vfa~GD~a~~~~~~~~~~~~~~~~  341 (469)
                               +++++|.||+|+|.+|+..++... ++..+ +|+|.||++++|+.|+|||+|||+..+.          .+
T Consensus       662 ~~~~~~g~~~~i~~D~Vi~A~G~~p~~~l~~~~~gl~~~~~G~i~vd~~~~Ts~~gVfA~GD~~~g~~----------~v  731 (752)
T PRK12778        662 RPVAIPGSTFTVDVDLVIVSVGVSPNPLVPSSIPGLELNRKGTIVVDEEMQSSIPGIYAGGDIVRGGA----------TV  731 (752)
T ss_pred             CceecCCCeEEEECCEEEECcCCCCCccccccccCceECCCCCEEeCCCCCCCCCCEEEeCCccCCcH----------HH
Confidence                     259999999999999998776553 67765 5789999999999999999999997532          34


Q ss_pred             HHHHHHHHHHHHHHhc
Q 012165          342 DHARQSAQHCIKALLS  357 (469)
Q Consensus       342 ~~A~~~a~~~a~~i~~  357 (469)
                      ..|+.+|+.+|.+|..
T Consensus       732 v~Av~~G~~AA~~I~~  747 (752)
T PRK12778        732 ILAMGDGKRAAAAIDE  747 (752)
T ss_pred             HHHHHHHHHHHHHHHH
Confidence            5689999999998863

>TIGR03315 Se_ygfK putative selenate reductase, YgfK subunit

Probab=100.00  E-value=6.7e-38  Score=333.94  Aligned_cols=313  Identities=21%  Similarity=0.224  Sum_probs=219.5

Q ss_pred             cccccccccccccccccCCCCcccccc--cCCcccccccccccc---------cccC-CCCCCcEEEEcCcHHHHHHHHH
Q 012165            2 ASVSNSLSFKHGLSLWCPQSPSLHRIR--HSSAKNFQRRGFVVA---------YSSF-ANENREFVIVGGGNAAGYAART   69 (469)
Q Consensus         2 ~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~---------~~~~-~~~~~~vvIIGgG~AGl~aA~~   69 (469)
                      ..++||||.+||++|+++|+..|.|..  .+++++.+.|+..+.         ..+. ....++|+||||||||++||.+
T Consensus       476 i~~~nPlp~icGrVC~h~Ce~~C~R~~~d~pV~I~~Lkr~a~d~~~~~~~~~~~~~~~~~~~kkVaIIGGGPAGLSAA~~  555 (1012)
T TIGR03315       476 IYDKNPLPAITGTICDHQCQYKCTRLDYDESVNIREMKKVAAEKGYDEYKTRWHKPQGKSSAHKVAVIGAGPAGLSAGYF  555 (1012)
T ss_pred             HHHhCChhhHhhCcCCcchHHHhcCCCCCCCCcccHHHHHHHhhHHHhcCccCCCCCCCCCCCcEEEECCCHHHHHHHHH
Confidence            357899999999999999999999976  889999888876542         0111 2346899999999999999999


Q ss_pred             HHHcCCCCCcEEEEcCCCCCCCCCCCCcccccCCCCCCCCCCCCCccccCCCCCCCCHhHHHHCCcEEEeCCcEEEEeCC
Q 012165           70 FVEHGMADGRLCIVSKEAYAPYERPALTKGYLFPLDKKPARLPGFHTCVGSGGERQTPEWYKEKGIEMIYQDPVTSIDIE  149 (469)
Q Consensus        70 L~~~g~~~~~V~vie~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~v~~id~~  149 (469)
                      |++.|+   +|+|+|+++.++.. .  .  +..+.    .+++.       +...+..+++...|++++++...      
T Consensus       556 LAr~G~---~VTV~Ek~~~lGG~-l--~--~~IP~----~rlp~-------e~l~~~ie~l~~~GVe~~~g~~~------  610 (1012)
T TIGR03315       556 LARAGH---PVTVFEKKEKPGGV-V--K--NIIPE----FRISA-------ESIQKDIELVKFHGVEFKYGCSP------  610 (1012)
T ss_pred             HHHCCC---eEEEEecccccCce-e--e--ecccc----cCCCH-------HHHHHHHHHHHhcCcEEEEeccc------
Confidence            999998   79999998764321 0  0  01111    11110       00123345677889999887321      


Q ss_pred             CcEEEeCCCeEEEeccEEeccCCCCCcCCCCCCCCcCcEEEecCHHHHHHHHH---hhhcCCeEEEEcCChHHHHHHHHH
Q 012165          150 KQTLITNSGKLLKYGSLIVATGCTASRFPEKIGGYLPGVHYIRDVADADALIS---SLEKAKKVVVVGGGYIGMEVAAAA  226 (469)
Q Consensus       150 ~~~v~~~~g~~~~yd~lVlAtG~~~~~~~~~~g~~~~~v~~~~~~~~~~~~~~---~~~~~~~vvVvG~G~~g~e~A~~l  226 (469)
                        .+.+++.....||+||||||+++...+.++|.. +++..  .......+..   ....+++|+|||||.+|+|+|..+
T Consensus       611 --d~~ve~l~~~gYDaVIIATGA~~~~~l~I~G~~-~~v~~--avefL~~~~~~~~~~~~GK~VVVIGGGnvAmD~Ar~a  685 (1012)
T TIGR03315       611 --DLTVAELKNQGYKYVILAIGAWKHGPLRLEGGG-ERVLK--SLEFLRAFKEGPTINPLGKHVVVVGGGNTAMDAARAA  685 (1012)
T ss_pred             --ceEhhhhhcccccEEEECCCCCCCCCCCcCCCC-cceee--HHHHHHHhhccccccccCCeEEEECCCHHHHHHHHHH
Confidence              122233334679999999999865444445532 33332  1222222211   234689999999999999999998


Q ss_pred             HhC-CC-eEe---------------eeHHHHHHcCcEEEcCCeEEEEEeCCCCcEEE--E------------EcCCC--C
Q 012165          227 VGW-KL-DTT---------------RYEQLYQQNGVKFVKGASIKNLEAGSDGRVAA--V------------KLEDG--S  273 (469)
Q Consensus       227 ~~~-g~-~v~---------------~~~~~l~~~gV~~~~~~~v~~i~~~~~~~v~~--v------------~~~~g--~  273 (469)
                      .+. |. +|+               .+.+ ..+.||+++.+..+.+++   ++.+..  +            ...+|  .
T Consensus       686 ~Rl~Ga~kVtLVyRr~~~~Mpa~~eEl~~-aleeGVe~~~~~~p~~I~---~g~l~v~~~~l~~~d~sGr~~~v~~Gee~  761 (1012)
T TIGR03315       686 LRVPGVEKVTVVYRRTKRYMPASREELEE-ALEDGVDFKELLSPESFE---DGTLTCEVMKLGEPDASGRRRPVGTGETV  761 (1012)
T ss_pred             HHhCCCceEEEEEccCccccccCHHHHHH-HHHcCCEEEeCCceEEEE---CCeEEEEEEEeecccCCCceeeecCCCeE
Confidence            876 64 565               1222 235799999988888876   122211  1            11223  3


Q ss_pred             EEeCCEEEEccCCccCCchhhhcCCccc-CCCEEeCCC-CCCCCCceEEeccccccCCccCCcccccchHHHHHHHHHHH
Q 012165          274 TIDADTIVIGIGAKPTVSPFERVGLNSS-VGGIQVDGQ-FRTRMPGIFAIGDVAAFPLKMYDRTARVEHVDHARQSAQHC  351 (469)
Q Consensus       274 ~i~~D~vi~a~G~~p~~~~~~~~gl~~~-~g~i~Vd~~-~~t~~~~Vfa~GD~a~~~~~~~~~~~~~~~~~~A~~~a~~~  351 (469)
                      ++++|.||+|+|.+|+++++++.++..+ +|++.||++ ++|+.|+|||+|||+..+.          .+..|+.+|+.|
T Consensus       762 ~I~aD~VIvAiG~~Pnt~lle~~GL~ld~~G~I~VD~~~~~Ts~pgVFAaGD~a~GP~----------tVv~AIaqGr~A  831 (1012)
T TIGR03315       762 DLPADTVIAAVGEQVDTDLLQKNGIPLDEYGWPVVNQATGETNITNVFVIGDANRGPA----------TIVEAIADGRKA  831 (1012)
T ss_pred             EEEeCEEEEecCCcCChHHHHhcCcccCCCCCEEeCCCCCccCCCCEEEEeCcCCCcc----------HHHHHHHHHHHH
Confidence            6899999999999999999998888865 578999985 8999999999999986543          456799999999


Q ss_pred             HHHHhcC
Q 012165          352 IKALLSA  358 (469)
Q Consensus       352 a~~i~~~  358 (469)
                      |.+|++.
T Consensus       832 A~nIl~~  838 (1012)
T TIGR03315       832 ANAILSR  838 (1012)
T ss_pred             HHHHhcc
Confidence            9999864

Members of this protein family are YgfK, predicted to be one subunit of a three-subunit, molybdopterin-containing selenate reductase. This enzyme is found, typically, in genomic regions associated with xanthine dehydrogenase homologs predicted to belong to the selenium-dependent molybdenum hydroxylases (SDMH). Therefore, the selenate reductase is suggested to play a role in furnishing selenide for SelD, the selenophosphate synthase.

>PRK06292 dihydrolipoamide dehydrogenase; Validated

Probab=100.00  E-value=1.5e-36  Score=309.88  Aligned_cols=379  Identities=21%  Similarity=0.278  Sum_probs=244.4

Q ss_pred             CCCcEEEEcCcHHHHHHHHHHHHcCCCCCcEEEEcCCCCCCCC----CCCCcccccC--------------CC--CCCCC
Q 012165           50 ENREFVIVGGGNAAGYAARTFVEHGMADGRLCIVSKEAYAPYE----RPALTKGYLF--------------PL--DKKPA  109 (469)
Q Consensus        50 ~~~~vvIIGgG~AGl~aA~~L~~~g~~~~~V~vie~~~~~~~~----~~~l~~~~~~--------------~~--~~~~~  109 (469)
                      +++||+|||||+||++||..|.+.|.   +|+|||++. .+..    .+-.+|.++.              +.  .....
T Consensus         2 ~~yDvvIIG~G~aGl~aA~~l~~~g~---~v~lie~~~-~GG~~~~~gc~psk~l~~~~~~~~~~~~~~~~gi~~~~~~~   77 (460)
T PRK06292          2 EKYDVIVIGAGPAGYVAARRAAKLGK---KVALIEKGP-LGGTCLNVGCIPSKALIAAAEAFHEAKHAEEFGIHADGPKI   77 (460)
T ss_pred             CcccEEEECCCHHHHHHHHHHHHCCC---eEEEEeCCc-cccceeccceeeHHHHHHHHHHHHHHHHHHhcCCCcCCCcc
Confidence            56899999999999999999999987   799999843 2211    0111111110              00  00000


Q ss_pred             CCCCCccccC---CCCCCCC-HhHHHHCCcEEEeCCcEEEEeCCCcEEEeCCCeEEEeccEEeccCCCCCcCCCCCCCC-
Q 012165          110 RLPGFHTCVG---SGGERQT-PEWYKEKGIEMIYQDPVTSIDIEKQTLITNSGKLLKYGSLIVATGCTASRFPEKIGGY-  184 (469)
Q Consensus       110 ~~~~~~~~~~---~~~~~~~-~~~~~~~~i~~~~~~~v~~id~~~~~v~~~~g~~~~yd~lVlAtG~~~~~~~~~~g~~-  184 (469)
                      ++........   ....... ...++..+++++.+ ++..++.  +++.+ +++++.||+||||||++   .|.++|.. 
T Consensus        78 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~g-~~~~~~~--~~v~v-~~~~~~~d~lIiATGs~---~p~ipg~~~  150 (460)
T PRK06292         78 DFKKVMARVRRERDRFVGGVVEGLEKKPKIDKIKG-TARFVDP--NTVEV-NGERIEAKNIVIATGSR---VPPIPGVWL  150 (460)
T ss_pred             CHHHHHHHHHHHHHHHhcchHHHHHhhCCCEEEEE-EEEEccC--CEEEE-CcEEEEeCEEEEeCCCC---CCCCCCCcc
Confidence            0000000000   0000011 22344567887765 4544443  45555 66789999999999998   23334431 


Q ss_pred             --cCcEEEecCHHHHHHHHHhhhcCCeEEEEcCChHHHHHHHHHHhCCCeEe------------------eeHHHHHHcC
Q 012165          185 --LPGVHYIRDVADADALISSLEKAKKVVVVGGGYIGMEVAAAAVGWKLDTT------------------RYEQLYQQNG  244 (469)
Q Consensus       185 --~~~v~~~~~~~~~~~~~~~~~~~~~vvVvG~G~~g~e~A~~l~~~g~~v~------------------~~~~~l~~~g  244 (469)
                        ...+++.      +........+++++|||+|++|+|+|..|.++|.+|+                  .+++.+++. 
T Consensus       151 ~~~~~~~~~------~~~~~~~~~~k~v~VIGgG~~g~E~A~~l~~~g~~Vtli~~~~~~l~~~d~~~~~~~~~~l~~~-  223 (460)
T PRK06292        151 ILGDRLLTS------DDAFELDKLPKSLAVIGGGVIGLELGQALSRLGVKVTVFERGDRILPLEDPEVSKQAQKILSKE-  223 (460)
T ss_pred             cCCCcEECc------hHHhCccccCCeEEEECCCHHHHHHHHHHHHcCCcEEEEecCCCcCcchhHHHHHHHHHHHhhc-
Confidence              2223222      2222223467999999999999999999999999987                  345667788 


Q ss_pred             cEEEcCCeEEEEEeCCCCcEEEEEcCCC--CEEeCCEEEEccCCccCCch--hhhcCCccc-CCCEEeCCCCCCCCCceE
Q 012165          245 VKFVKGASIKNLEAGSDGRVAAVKLEDG--STIDADTIVIGIGAKPTVSP--FERVGLNSS-VGGIQVDGQFRTRMPGIF  319 (469)
Q Consensus       245 V~~~~~~~v~~i~~~~~~~v~~v~~~~g--~~i~~D~vi~a~G~~p~~~~--~~~~gl~~~-~g~i~Vd~~~~t~~~~Vf  319 (469)
                      |++++++.+.+++..++..+ .+.+.++  +++++|.+++++|++||+++  ++.++++.+ +|+|.||+++||+.|+||
T Consensus       224 I~i~~~~~v~~i~~~~~~~v-~~~~~~~~~~~i~~D~vi~a~G~~p~~~~l~l~~~g~~~~~~g~i~vd~~~~ts~~~Iy  302 (460)
T PRK06292        224 FKIKLGAKVTSVEKSGDEKV-EELEKGGKTETIEADYVLVATGRRPNTDGLGLENTGIELDERGRPVVDEHTQTSVPGIY  302 (460)
T ss_pred             cEEEcCCEEEEEEEcCCceE-EEEEcCCceEEEEeCEEEEccCCccCCCCCCcHhhCCEecCCCcEeECCCcccCCCCEE
Confidence            99999999999985433222 2333333  57999999999999999985  677888775 577999999999999999


Q ss_pred             EeccccccCCccCCcccccchHHHHHHHHHHHHHHHhcCCCC--CCCCCCceeeecccccCCCcceeeEEeecCCC----
Q 012165          320 AIGDVAAFPLKMYDRTARVEHVDHARQSAQHCIKALLSAQTH--TYDYLPYFYSRVFEYEGSPRKVWWQFFGDNVG----  393 (469)
Q Consensus       320 a~GD~a~~~~~~~~~~~~~~~~~~A~~~a~~~a~~i~~~~~~--~~~~~p~~~~~~~~~~g~~~~~~~~~~G~~~~----  393 (469)
                      |+|||+..+.          ....|..||+.+|.||++....  .+..+|+   ..|..+.      +..+|.+..    
T Consensus       303 A~GD~~~~~~----------~~~~A~~qg~~aa~~i~~~~~~~~~~~~~p~---~~~~~~~------~a~vG~te~~a~~  363 (460)
T PRK06292        303 AAGDVNGKPP----------LLHEAADEGRIAAENAAGDVAGGVRYHPIPS---VVFTDPQ------IASVGLTEEELKA  363 (460)
T ss_pred             EEEecCCCcc----------chhHHHHHHHHHHHHhcCCCCCCcCCCCCCe---EEECCCc------cEEeECCHHHHHh
Confidence            9999997532          3345999999999999863222  2344553   2332211      344554321    


Q ss_pred             ---cEE-EEcc-----------CCCcEEEEEEe--CCEEEEEEeecCChHHh-HHHHHHHhCCCCCCh--hhhcCCCcHH
Q 012165          394 ---ETI-EIGN-----------FDPKIATFWID--SGKLKGVLVESGSPEEF-QLLPTLARSQPFVDK--AKLQQASSVE  453 (469)
Q Consensus       394 ---~~~-~~~~-----------~~~~~~~~~~~--~~~l~g~~~~~~~~~~~-~~~~~~~~~~~~~~~--~~~~~~~~~~  453 (469)
                         +.. ..-.           ...-+.|+.++  +++|+|+++++.++.++ ..+..+|+.+.+++.  ...+.||++.
T Consensus       364 ~g~~~~~~~~~~~~~~~~~~~~~~~g~~klv~d~~~~~ilG~~~vg~~a~e~i~~~~~ai~~~~t~~~l~~~~~~hPt~~  443 (460)
T PRK06292        364 AGIDYVVGEVPFEAQGRARVMGKNDGFVKVYADKKTGRLLGAHIIGPDAEHLIHLLAWAMQQGLTVEDLLRMPFYHPTLS  443 (460)
T ss_pred             cCCCeEEEEEecccchHHHhcCCCCeEEEEEEECCCCEEEEEEEECCCHHHHHHHHHHHHHCCCCHHHHhhCccCCCCHH
Confidence               110 0000           11236777764  48999999888777554 445567788888772  3346899999


Q ss_pred             HHHHHHHhcCCcc
Q 012165          454 EALEIARAALPVE  466 (469)
Q Consensus       454 ~~~~~~~~~~~~~  466 (469)
                      |+++.|++.+..+
T Consensus       444 e~~~~~~~~~~~~  456 (460)
T PRK06292        444 EGLRTALRDLFSK  456 (460)
T ss_pred             HHHHHHHHHHhhh
Confidence            9999998876553

>PRK06327 dihydrolipoamide dehydrogenase; Validated

Probab=100.00  E-value=3.1e-36  Score=307.63  Aligned_cols=383  Identities=18%  Similarity=0.262  Sum_probs=248.2

Q ss_pred             CCCcEEEEcCcHHHHHHHHHHHHcCCCCCcEEEEcCC------CCCCC---CCCCC-cccccC-----C--------CCC
Q 012165           50 ENREFVIVGGGNAAGYAARTFVEHGMADGRLCIVSKE------AYAPY---ERPAL-TKGYLF-----P--------LDK  106 (469)
Q Consensus        50 ~~~~vvIIGgG~AGl~aA~~L~~~g~~~~~V~vie~~------~~~~~---~~~~l-~~~~~~-----~--------~~~  106 (469)
                      ..+|++|||||+||++||.++++.|.   +|+|||+.      ...+.   ++... ++.++.     .        ...
T Consensus         3 ~~~DviIIG~G~aG~~aA~~~~~~g~---~v~lie~~~~~~g~~~~Gg~c~n~gc~P~k~l~~~a~~~~~~~~~~~~~G~   79 (475)
T PRK06327          3 KQFDVVVIGAGPGGYVAAIRAAQLGL---KVACIEAWKNPKGKPALGGTCLNVGCIPSKALLASSEEFENAGHHFADHGI   79 (475)
T ss_pred             cceeEEEECCCHHHHHHHHHHHhCCC---eEEEEecccCCCCCCCcCCccccccccHHHHHHHHHHHHHHHHhhHHhcCc
Confidence            35899999999999999999999987   79999971      11111   01111 111100     0        000


Q ss_pred             C----CCCCCCCccc---cCCCCCCCCHhHHHHCCcEEEeCCcEEEEeC--CCcEEEeC--CCeEEEeccEEeccCCCCC
Q 012165          107 K----PARLPGFHTC---VGSGGERQTPEWYKEKGIEMIYQDPVTSIDI--EKQTLITN--SGKLLKYGSLIVATGCTAS  175 (469)
Q Consensus       107 ~----~~~~~~~~~~---~~~~~~~~~~~~~~~~~i~~~~~~~v~~id~--~~~~v~~~--~g~~~~yd~lVlAtG~~~~  175 (469)
                      .    ..+++.....   .-..........++..+++++.+ ++..++.  +.++|.+.  ++++++||+||||||++|+
T Consensus        80 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~g-~~~~~~~~~~~~~v~v~~~~~~~~~~d~lViATGs~p~  158 (475)
T PRK06327         80 HVDGVKIDVAKMIARKDKVVKKMTGGIEGLFKKNKITVLKG-RGSFVGKTDAGYEIKVTGEDETVITAKHVIIATGSEPR  158 (475)
T ss_pred             cCCCCccCHHHHHHHHHHHHHHHHHHHHHHHHhCCCEEEEE-EEEEecCCCCCCEEEEecCCCeEEEeCEEEEeCCCCCC
Confidence            0    0000000000   00000001123345678999886 5666663  24567664  3457999999999999986


Q ss_pred             cCCCCCCCCcCcEEEecCHHHHHHHHHhhhcCCeEEEEcCChHHHHHHHHHHhCCCeEe------------------eeH
Q 012165          176 RFPEKIGGYLPGVHYIRDVADADALISSLEKAKKVVVVGGGYIGMEVAAAAVGWKLDTT------------------RYE  237 (469)
Q Consensus       176 ~~~~~~g~~~~~v~~~~~~~~~~~~~~~~~~~~~vvVvG~G~~g~e~A~~l~~~g~~v~------------------~~~  237 (469)
                      .+|.++   .++...+.    .+.+......+++++|||+|++|+|+|..|.++|.+|+                  .+.
T Consensus       159 ~~p~~~---~~~~~~~~----~~~~~~~~~~~~~vvVvGgG~~g~E~A~~l~~~g~~Vtli~~~~~~l~~~d~~~~~~~~  231 (475)
T PRK06327        159 HLPGVP---FDNKIILD----NTGALNFTEVPKKLAVIGAGVIGLELGSVWRRLGAEVTILEALPAFLAAADEQVAKEAA  231 (475)
T ss_pred             CCCCCC---CCCceEEC----cHHHhcccccCCeEEEECCCHHHHHHHHHHHHcCCeEEEEeCCCccCCcCCHHHHHHHH
Confidence            444322   22221221    22222223457999999999999999999999999988                  235


Q ss_pred             HHHHHcCcEEEcCCeEEEEEeCCCCcEEEEEcCC--C--CEEeCCEEEEccCCccCCch--hhhcCCccc-CCCEEeCCC
Q 012165          238 QLYQQNGVKFVKGASIKNLEAGSDGRVAAVKLED--G--STIDADTIVIGIGAKPTVSP--FERVGLNSS-VGGIQVDGQ  310 (469)
Q Consensus       238 ~~l~~~gV~~~~~~~v~~i~~~~~~~v~~v~~~~--g--~~i~~D~vi~a~G~~p~~~~--~~~~gl~~~-~g~i~Vd~~  310 (469)
                      +.+++.||++++++.|++++.++ +.+ .+.+.+  |  +++++|.+++++|++|++++  ++.+++..+ +|+|.||++
T Consensus       232 ~~l~~~gi~i~~~~~v~~i~~~~-~~v-~v~~~~~~g~~~~i~~D~vl~a~G~~p~~~~l~~~~~g~~~~~~G~i~vd~~  309 (475)
T PRK06327        232 KAFTKQGLDIHLGVKIGEIKTGG-KGV-SVAYTDADGEAQTLEVDKLIVSIGRVPNTDGLGLEAVGLKLDERGFIPVDDH  309 (475)
T ss_pred             HHHHHcCcEEEeCcEEEEEEEcC-CEE-EEEEEeCCCceeEEEcCEEEEccCCccCCCCCCcHhhCceeCCCCeEeECCC
Confidence            66788999999999999998643 333 355444  3  47999999999999999884  567788765 577999999


Q ss_pred             CCCCCCceEEeccccccCCccCCcccccchHHHHHHHHHHHHHHHhcCCC-CCCCCCCceeeecccccCCCcceeeEEee
Q 012165          311 FRTRMPGIFAIGDVAAFPLKMYDRTARVEHVDHARQSAQHCIKALLSAQT-HTYDYLPYFYSRVFEYEGSPRKVWWQFFG  389 (469)
Q Consensus       311 ~~t~~~~Vfa~GD~a~~~~~~~~~~~~~~~~~~A~~~a~~~a~~i~~~~~-~~~~~~p~~~~~~~~~~g~~~~~~~~~~G  389 (469)
                      +||+.|+|||+|||+..+.          ....|..+|+.+|++|++... ..+..+|+.   .|..+.      +..+|
T Consensus       310 ~~Ts~~~VyA~GD~~~~~~----------~~~~A~~~G~~aa~~i~g~~~~~~~~~~p~~---~~~~pe------~a~vG  370 (475)
T PRK06327        310 CRTNVPNVYAIGDVVRGPM----------LAHKAEEEGVAVAERIAGQKGHIDYNTIPWV---IYTSPE------IAWVG  370 (475)
T ss_pred             CccCCCCEEEEEeccCCcc----------hHHHHHHHHHHHHHHHcCCCCCCCCCCCCeE---EeCCcc------eEEEe
Confidence            9999999999999997432          345699999999999986432 234555642   232211      33445


Q ss_pred             cCCCc-------EEE-Ecc-----------CCCcEEEEEEe--CCEEEEEEeecCChHHhHH-HHHHHhCCCCCCh--hh
Q 012165          390 DNVGE-------TIE-IGN-----------FDPKIATFWID--SGKLKGVLVESGSPEEFQL-LPTLARSQPFVDK--AK  445 (469)
Q Consensus       390 ~~~~~-------~~~-~~~-----------~~~~~~~~~~~--~~~l~g~~~~~~~~~~~~~-~~~~~~~~~~~~~--~~  445 (469)
                      ....+       ... .-.           ....|.|++++  +++|+|+++++.++.++.. +..+|+.+.+++.  ..
T Consensus       371 lte~~a~~~g~~~~~~~~~~~~~~~~~~~~~~~g~~klv~d~~~~~ilG~~~~g~~a~e~i~~~~~ai~~~~t~~~l~~~  450 (475)
T PRK06327        371 KTEQQLKAEGVEYKAGKFPFMANGRALAMGEPDGFVKIIADAKTDEILGVHVIGPNASELIAEAVVAMEFKASSEDIARI  450 (475)
T ss_pred             CCHHHHHHcCCCEEEEEEcccccchhhhcCCCCeEEEEEEECCCCEEEEEEEECCCHHHHHHHHHHHHHCCCCHHHHhcC
Confidence            43211       100 000           01236777774  6999999988887766554 4556788888762  23


Q ss_pred             hcCCCcHHHHHHHHHhcCC
Q 012165          446 LQQASSVEEALEIARAALP  464 (469)
Q Consensus       446 ~~~~~~~~~~~~~~~~~~~  464 (469)
                      ++.||++.|.++.|+..+.
T Consensus       451 ~~~hPt~~e~~~~~~~~~~  469 (475)
T PRK06327        451 CHAHPTLSEVWHEAALAVD  469 (475)
T ss_pred             CcCCCChHHHHHHHHHHhc
Confidence            4689999999999986653

>PTZ00153 lipoamide dehydrogenase; Provisional

Probab=100.00  E-value=3.4e-36  Score=312.34  Aligned_cols=301  Identities=19%  Similarity=0.280  Sum_probs=203.9

Q ss_pred             cEEEeCCcEEEEeCCCcEEEe-CCCeEEEeccEEeccCCCCCcCCCCCCCCcCcEEEecCHHHHHHHHHhhhcCCeEEEE
Q 012165          135 IEMIYQDPVTSIDIEKQTLIT-NSGKLLKYGSLIVATGCTASRFPEKIGGYLPGVHYIRDVADADALISSLEKAKKVVVV  213 (469)
Q Consensus       135 i~~~~~~~v~~id~~~~~v~~-~~g~~~~yd~lVlAtG~~~~~~~~~~g~~~~~v~~~~~~~~~~~~~~~~~~~~~vvVv  213 (469)
                      ++++.+ ...-++  .++|.+ .+++++.||+||||||++|. .|..++.+.+++++.   .+...+   ...+++++||
T Consensus       249 v~vi~G-~a~f~~--~~~v~v~~~g~~i~ad~lIIATGS~P~-~P~~~~~~~~~V~ts---~d~~~l---~~lpk~VvIV  318 (659)
T PTZ00153        249 VQVIYE-RGHIVD--KNTIKSEKSGKEFKVKNIIIATGSTPN-IPDNIEVDQKSVFTS---DTAVKL---EGLQNYMGIV  318 (659)
T ss_pred             eEEEEe-EEEEec--CCeEEEccCCEEEECCEEEEcCCCCCC-CCCCCCCCCCcEEeh---HHhhhh---hhcCCceEEE
Confidence            666665 332233  344544 36678999999999999997 454334333445543   333333   2347899999


Q ss_pred             cCChHHHHHHHHHHhCCCeEe------------------eeHHH-HHHcCcEEEcCCeEEEEEeCCCCcEEEEEcCC---
Q 012165          214 GGGYIGMEVAAAAVGWKLDTT------------------RYEQL-YQQNGVKFVKGASIKNLEAGSDGRVAAVKLED---  271 (469)
Q Consensus       214 G~G~~g~e~A~~l~~~g~~v~------------------~~~~~-l~~~gV~~~~~~~v~~i~~~~~~~v~~v~~~~---  271 (469)
                      |+|++|+|+|..|..+|.+|+                  .+.+. +++.||++++++.|++++..+++....+.+.+   
T Consensus       319 GgG~iGvE~A~~l~~~G~eVTLIe~~~~ll~~~d~eis~~l~~~ll~~~GV~I~~~~~V~~I~~~~~~~~v~v~~~~~~~  398 (659)
T PTZ00153        319 GMGIIGLEFMDIYTALGSEVVSFEYSPQLLPLLDADVAKYFERVFLKSKPVRVHLNTLIEYVRAGKGNQPVIIGHSERQT  398 (659)
T ss_pred             CCCHHHHHHHHHHHhCCCeEEEEeccCcccccCCHHHHHHHHHHHhhcCCcEEEcCCEEEEEEecCCceEEEEEEecccc
Confidence            999999999999999999988                  22333 35789999999999999864333222343321   


Q ss_pred             ----C--------CEEeCCEEEEccCCccCCch--hhhcCCcccCCCEEeCCCCCCC------CCceEEeccccccCCcc
Q 012165          272 ----G--------STIDADTIVIGIGAKPTVSP--FERVGLNSSVGGIQVDGQFRTR------MPGIFAIGDVAAFPLKM  331 (469)
Q Consensus       272 ----g--------~~i~~D~vi~a~G~~p~~~~--~~~~gl~~~~g~i~Vd~~~~t~------~~~Vfa~GD~a~~~~~~  331 (469)
                          +        +++++|.||+|+|++||++.  ++..++..++|+|.||++|||+      +|+|||+|||+..+.  
T Consensus       399 ~~~~~~~~~~~~~~~i~aD~VlvAtGr~Pnt~~L~l~~~gi~~~~G~I~VDe~lqTs~~~~~~v~~IYAiGDv~g~~~--  476 (659)
T PTZ00153        399 GESDGPKKNMNDIKETYVDSCLVATGRKPNTNNLGLDKLKIQMKRGFVSVDEHLRVLREDQEVYDNIFCIGDANGKQM--  476 (659)
T ss_pred             ccccccccccccceEEEcCEEEEEECcccCCccCCchhcCCcccCCEEeECCCCCcCCCCCCCCCCEEEEEecCCCcc--
Confidence                1        37999999999999999987  4677887777789999999997      699999999986432  


Q ss_pred             CCcccccchHHHHHHHHHHHHHHHhcCC------------CC--CCCCCCceeeecccccCCCcceeeEEeecCCCc---
Q 012165          332 YDRTARVEHVDHARQSAQHCIKALLSAQ------------TH--TYDYLPYFYSRVFEYEGSPRKVWWQFFGDNVGE---  394 (469)
Q Consensus       332 ~~~~~~~~~~~~A~~~a~~~a~~i~~~~------------~~--~~~~~p~~~~~~~~~~g~~~~~~~~~~G~~~~~---  394 (469)
                              ....|..||+.++++|++..            ..  .|..+|.   ..|..+-      +.++|.++.+   
T Consensus       477 --------La~~A~~qg~~aa~ni~g~~~~~~~~~~~~~~~~~~~~~~iP~---~ift~Pe------iA~VGlTE~eA~~  539 (659)
T PTZ00153        477 --------LAHTASHQALKVVDWIEGKGKENVNINVENWASKPIIYKNIPS---VCYTTPE------LAFIGLTEKEAKE  539 (659)
T ss_pred             --------CHHHHHHHHHHHHHHHcCCCccccccccccccccccccCcCCE---EEECcCc------eEEeeCCHHHHHh
Confidence                    33459999999999998642            11  2344553   1222110      2333332110   


Q ss_pred             ------E-------------EEEcc---------------------CCCcEEEEEEe--CCEEEEEEeecCChHHhHHH-
Q 012165          395 ------T-------------IEIGN---------------------FDPKIATFWID--SGKLKGVLVESGSPEEFQLL-  431 (469)
Q Consensus       395 ------~-------------~~~~~---------------------~~~~~~~~~~~--~~~l~g~~~~~~~~~~~~~~-  431 (469)
                            +             ...+.                     ....+.|++++  +++|+|+++++.++.++... 
T Consensus       540 ~g~~~~v~v~~~~~~~~~ra~~~~~~~~p~~~~~~~y~~g~~~~~~~~~G~vKli~d~~t~rILGa~ivG~~A~elI~~~  619 (659)
T PTZ00153        540 LYPPDNVGVEISFYKANSKVLCENNISFPNNSKNNSYNKGKYNTVDNTEGMVKIVYLKDTKEILGMFIVGSYASILIHEG  619 (659)
T ss_pred             cCCCcceEEEEEEecccchhhhccccccccccccccccccccccccCCceEEEEEEECCCCeEEEEEEECCCHHHHHHHH
Confidence                  0             00000                     02336777663  69999999888888766554 


Q ss_pred             HHHHhCCCCCCh--hhhcCCCcHHHHHHHHHhcCC
Q 012165          432 PTLARSQPFVDK--AKLQQASSVEEALEIARAALP  464 (469)
Q Consensus       432 ~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~  464 (469)
                      .-+|+.+.+++.  ..++.|||+.|.+..|++++.
T Consensus       620 a~aI~~~~tv~dl~~~~~~hPT~sE~~~~a~~~~~  654 (659)
T PTZ00153        620 VLAINLKLSVKDLAHMVHSHPTISEVLDAAFKAIA  654 (659)
T ss_pred             HHHHHCCCCHHHHhhCcCCCCChHHHHHHHHHHHH
Confidence            445788877763  234679999999999998765

>PRK12775 putative trifunctional 2-polyprenylphenol hydroxylase/glutamate synthase subunit beta/ferritin domain-containing protein; Provisional

Probab=100.00  E-value=2.5e-37  Score=336.26  Aligned_cols=318  Identities=19%  Similarity=0.217  Sum_probs=229.4

Q ss_pred             cccccccccccccccc--CCCCcccccc--cCCccccccccccccc------cc-CCCCCCcEEEEcCcHHHHHHHHHHH
Q 012165            3 SVSNSLSFKHGLSLWC--PQSPSLHRIR--HSSAKNFQRRGFVVAY------SS-FANENREFVIVGGGNAAGYAARTFV   71 (469)
Q Consensus         3 ~~~~~~~~~~~~~~~~--~~~~~~~~~~--~~~~~~~~~~~~~~~~------~~-~~~~~~~vvIIGgG~AGl~aA~~L~   71 (469)
                      .++||||.+|||+||+  +|+..|.|..  .++++..++|+..+..      .+ ...+.++|+|||||||||+||.+|+
T Consensus       371 ~~~np~p~~~grvCp~~~~Ce~~C~~~~~~~pv~I~~ler~~~d~~~~~~~~~~~~~~~~~kVaIIG~GPAGLsaA~~La  450 (1006)
T PRK12775        371 YEASIFPSICGRVCPQETQCEAQCIIAKKHESVGIGRLERFVGDNARAKPVKPPRFSKKLGKVAICGSGPAGLAAAADLV  450 (1006)
T ss_pred             HHhCChHHHhcCcCCCCCCHHHhCcCCCCCCCeeecHHHHHHHHHHHHcCCCCCCCCCCCCEEEEECCCHHHHHHHHHHH
Confidence            5789999999999998  8999999987  8899999998765431      11 1234689999999999999999999


Q ss_pred             HcCCCCCcEEEEcCCCCCCCCCCCCcccccCCCCCCCCCCCCCccccCCCCCCCCHhHHHHCCcEEEeCCcEEEEeCCCc
Q 012165           72 EHGMADGRLCIVSKEAYAPYERPALTKGYLFPLDKKPARLPGFHTCVGSGGERQTPEWYKEKGIEMIYQDPVTSIDIEKQ  151 (469)
Q Consensus        72 ~~g~~~~~V~vie~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~v~~id~~~~  151 (469)
                      ++|+   +|+|+|+.+..+..   +.  +-.+.    .+++       .+......+++++.|++++.++.+ +     +
T Consensus       451 ~~G~---~VtV~E~~~~~GG~---l~--~gip~----~rl~-------~e~~~~~~~~l~~~Gv~~~~~~~v-g-----~  505 (1006)
T PRK12775        451 KYGV---DVTVYEALHVVGGV---LQ--YGIPS----FRLP-------RDIIDREVQRLVDIGVKIETNKVI-G-----K  505 (1006)
T ss_pred             HcCC---cEEEEecCCCCcce---ee--ccCCc----cCCC-------HHHHHHHHHHHHHCCCEEEeCCcc-C-----C
Confidence            9998   79999987654311   10  00010    1111       001123456788899999998543 2     2


Q ss_pred             EEEeCCCe-EEEeccEEeccCCC-CCcCCCCCCCCcCcEEEecCHHHHHHHHH---------hhhcCCeEEEEcCChHHH
Q 012165          152 TLITNSGK-LLKYGSLIVATGCT-ASRFPEKIGGYLPGVHYIRDVADADALIS---------SLEKAKKVVVVGGGYIGM  220 (469)
Q Consensus       152 ~v~~~~g~-~~~yd~lVlAtG~~-~~~~~~~~g~~~~~v~~~~~~~~~~~~~~---------~~~~~~~vvVvG~G~~g~  220 (469)
                      .+++++-. ...||+||||||+. |+ .+.+||.+.+++++..++.+...+..         ....+++|+|||||.+|+
T Consensus       506 ~~~~~~l~~~~~yDaViIATGa~~pr-~l~IpG~~l~gV~~a~~fL~~~~~~~~~~~~~~~~~~~~Gk~VvVIGgG~tA~  584 (1006)
T PRK12775        506 TFTVPQLMNDKGFDAVFLGVGAGAPT-FLGIPGEFAGQVYSANEFLTRVNLMGGDKFPFLDTPISLGKSVVVIGAGNTAM  584 (1006)
T ss_pred             ccCHHHHhhccCCCEEEEecCCCCCC-CCCCCCcCCCCcEEHHHHHHHHHhcCccccccccCCccCCCEEEEECCcHHHH
Confidence            22222211 24699999999995 55 56678888888877655443332210         123679999999999999


Q ss_pred             HHHHHHHhCCCe-Ee------------ee--HHHHHHcCcEEEcCCeEEEEEeCCCCcEEEEEcC---------------
Q 012165          221 EVAAAAVGWKLD-TT------------RY--EQLYQQNGVKFVKGASIKNLEAGSDGRVAAVKLE---------------  270 (469)
Q Consensus       221 e~A~~l~~~g~~-v~------------~~--~~~l~~~gV~~~~~~~v~~i~~~~~~~v~~v~~~---------------  270 (469)
                      ++|..+.++|.+ |+            ..  .+.+++.||++++++.+.++..+++|++.++++.               
T Consensus       585 D~A~~a~rlGa~~Vtiv~rr~~~em~a~~~e~~~a~eeGI~~~~~~~p~~i~~~~~G~v~~v~~~~~~l~~~d~~Gr~~~  664 (1006)
T PRK12775        585 DCLRVAKRLGAPTVRCVYRRSEAEAPARIEEIRHAKEEGIDFFFLHSPVEIYVDAEGSVRGMKVEEMELGEPDEKGRRKP  664 (1006)
T ss_pred             HHHHHHHHcCCCEEEEEeecCcccCCCCHHHHHHHHhCCCEEEecCCcEEEEeCCCCeEEEEEEEEEEecccCCCCCccc
Confidence            999999999875 44            11  2456789999999999999976556777666442               


Q ss_pred             --CC--CEEeCCEEEEccCCccCCchhhh-cCCccc-CCCEEeCC-----CCCCCCCceEEeccccccCCccCCcccccc
Q 012165          271 --DG--STIDADTIVIGIGAKPTVSPFER-VGLNSS-VGGIQVDG-----QFRTRMPGIFAIGDVAAFPLKMYDRTARVE  339 (469)
Q Consensus       271 --~g--~~i~~D~vi~a~G~~p~~~~~~~-~gl~~~-~g~i~Vd~-----~~~t~~~~Vfa~GD~a~~~~~~~~~~~~~~  339 (469)
                        +|  .++++|.||+|+|..|++.++.. .++..+ +|.|.+|+     +++|++|+|||+|||+..+.          
T Consensus       665 ~~~g~~~~i~~D~Vi~AiG~~p~~~~~~~~~gl~l~~~G~I~vd~~~v~~~~~Ts~pgVFAaGDv~~G~~----------  734 (1006)
T PRK12775        665 MPTGEFKDLECDTVIYALGTKANPIITQSTPGLALNKWGNIAADDGKLESTQSTNLPGVFAGGDIVTGGA----------  734 (1006)
T ss_pred             cCCCceEEEEcCEEEECCCcCCChhhhhccCCcccCCCCcEEeCCCccccCcCCCCCCEEEecCcCCCcc----------
Confidence              12  26999999999999999876654 366654 57799986     78999999999999987543          


Q ss_pred             hHHHHHHHHHHHHHHHh
Q 012165          340 HVDHARQSAQHCIKALL  356 (469)
Q Consensus       340 ~~~~A~~~a~~~a~~i~  356 (469)
                      .+..|+.+|+.+|.+|.
T Consensus       735 ~vv~Ai~~Gr~AA~~I~  751 (1006)
T PRK12775        735 TVILAMGAGRRAARSIA  751 (1006)
T ss_pred             HHHHHHHHHHHHHHHHH
Confidence            34467788888887764

>TIGR01318 gltD_gamma_fam glutamate synthase small subunit family protein, proteobacterial

Probab=100.00  E-value=7.3e-37  Score=310.27  Aligned_cols=319  Identities=21%  Similarity=0.236  Sum_probs=229.6

Q ss_pred             ccccccccccccccc--cCCCCcccccc--cCCccccccccccccc------c---cCCCCCCcEEEEcCcHHHHHHHHH
Q 012165            3 SVSNSLSFKHGLSLW--CPQSPSLHRIR--HSSAKNFQRRGFVVAY------S---SFANENREFVIVGGGNAAGYAART   69 (469)
Q Consensus         3 ~~~~~~~~~~~~~~~--~~~~~~~~~~~--~~~~~~~~~~~~~~~~------~---~~~~~~~~vvIIGgG~AGl~aA~~   69 (469)
                      .++||||.+||++|+  ++|+..|.|..  .++++..+.|+..+..      +   +...+.++|+|||+|++|+++|..
T Consensus        80 ~~~np~~~~~grvC~~~~~Ce~~C~~~~~~~~v~i~~l~r~~~~~~~~~~~~~~~~~~~~~~~~V~IIG~GpaGl~aA~~  159 (467)
T TIGR01318        80 HQTNTLPEICGRVCPQDRLCEGACTLNDEFGAVTIGNLERYITDTALAMGWRPDLSHVVPTGKRVAVIGAGPAGLACADI  159 (467)
T ss_pred             HHhCCchHhhcccCCCCCChHHhCcCCCCCCCccHHHHHHHHHHHHHHhCCCCCCCCcCCCCCeEEEECCCHHHHHHHHH
Confidence            578999999999999  59999999986  8899999988765431      1   122356899999999999999999


Q ss_pred             HHHcCCCCCcEEEEcCCCCCCCCCCCCcccccCCCCCCCCCCCCCccccCCCCCCCCHhHHHHCCcEEEeCCcEEEEeCC
Q 012165           70 FVEHGMADGRLCIVSKEAYAPYERPALTKGYLFPLDKKPARLPGFHTCVGSGGERQTPEWYKEKGIEMIYQDPVTSIDIE  149 (469)
Q Consensus        70 L~~~g~~~~~V~vie~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~v~~id~~  149 (469)
                      |++.|+   +|+++|+.+.+...   +.  +-.+    ..+++.       +......+++++.|++++.++.+..    
T Consensus       160 l~~~G~---~V~i~e~~~~~gG~---l~--~gip----~~~~~~-------~~~~~~~~~~~~~Gv~~~~~~~v~~----  216 (467)
T TIGR01318       160 LARAGV---QVVVFDRHPEIGGL---LT--FGIP----SFKLDK-------AVLSRRREIFTAMGIEFHLNCEVGR----  216 (467)
T ss_pred             HHHcCC---eEEEEecCCCCCce---ee--ecCc----cccCCH-------HHHHHHHHHHHHCCCEEECCCEeCC----
Confidence            999987   79999988754211   00  0000    001110       0012335678889999999876521    


Q ss_pred             CcEEEeCCCeEEEeccEEeccCCCCCcCCCCCCCCcCcEEEecCHHHH--HHHHH---------hhhcCCeEEEEcCChH
Q 012165          150 KQTLITNSGKLLKYGSLIVATGCTASRFPEKIGGYLPGVHYIRDVADA--DALIS---------SLEKAKKVVVVGGGYI  218 (469)
Q Consensus       150 ~~~v~~~~g~~~~yd~lVlAtG~~~~~~~~~~g~~~~~v~~~~~~~~~--~~~~~---------~~~~~~~vvVvG~G~~  218 (469)
                        .+.+++ ....||+||+|||+.+...+.++|.+.+++++..++...  ..+..         ....+++++|+|+|.+
T Consensus       217 --~~~~~~-~~~~~D~vilAtGa~~~~~~~i~g~~~~gV~~a~~~l~~~~~~~~~~~~~~~~~~~~~~gk~VvVIGgG~~  293 (467)
T TIGR01318       217 --DISLDD-LLEDYDAVFLGVGTYRSMRGGLPGEDAPGVLQALPFLIANTRQLMGLPESPEEPLIDVEGKRVVVLGGGDT  293 (467)
T ss_pred             --ccCHHH-HHhcCCEEEEEeCCCCCCcCCCCCcCCCCcEEHHHHHHHHHHHhcCCCccccccccccCCCEEEEECCcHH
Confidence              122222 124799999999998754556788888888765332211  11100         0124689999999999


Q ss_pred             HHHHHHHHHhCCC-eEe--------------eeHHHHHHcCcEEEcCCeEEEEEeCCCCcEEEEEcC---------CC--
Q 012165          219 GMEVAAAAVGWKL-DTT--------------RYEQLYQQNGVKFVKGASIKNLEAGSDGRVAAVKLE---------DG--  272 (469)
Q Consensus       219 g~e~A~~l~~~g~-~v~--------------~~~~~l~~~gV~~~~~~~v~~i~~~~~~~v~~v~~~---------~g--  272 (469)
                      |+++|..+.++|. +|+              ...+.+++.||++++++.+.++..++++++.++++.         +|  
T Consensus       294 a~d~A~~a~~~Ga~~Vtvv~r~~~~~~~~~~~e~~~~~~~GV~~~~~~~~~~i~~~~~g~v~~v~~~~~~~~~~~~~g~~  373 (467)
T TIGR01318       294 AMDCVRTAIRLGAASVTCAYRRDEANMPGSRREVANAREEGVEFLFNVQPVYIECDEDGRVTGVGLVRTALGEPDADGRR  373 (467)
T ss_pred             HHHHHHHHHHcCCCeEEEEEecCcccCCCCHHHHHHHHhcCCEEEecCCcEEEEECCCCeEEEEEEEEEEecccCCCCCc
Confidence            9999999999985 576              112345688999999999999975556666555441         12  


Q ss_pred             ---------CEEeCCEEEEccCCccCC-chhhhcCCccc-CCCEEeC----CCCCCCCCceEEeccccccCCccCCcccc
Q 012165          273 ---------STIDADTIVIGIGAKPTV-SPFERVGLNSS-VGGIQVD----GQFRTRMPGIFAIGDVAAFPLKMYDRTAR  337 (469)
Q Consensus       273 ---------~~i~~D~vi~a~G~~p~~-~~~~~~gl~~~-~g~i~Vd----~~~~t~~~~Vfa~GD~a~~~~~~~~~~~~  337 (469)
                               +++++|.||+++|++|+. .+++..+++.+ +|++.||    .+++|+.|+|||+|||+..+.        
T Consensus       374 ~~~~~~g~~~~i~~D~Vi~a~G~~p~~~~~~~~~gl~~~~~g~i~vd~~~~~~~~T~~~gVfa~GD~~~~~~--------  445 (467)
T TIGR01318       374 RPVPVAGSEFVLPADVVIMAFGFQPHAMPWLAGHGITLDSWGRIITGDVSYLPYQTTNPKIFAGGDAVRGAD--------  445 (467)
T ss_pred             cceecCCceEEEECCEEEECCcCCCCccccccccCccCCCCCCEEeCCccccCccCCCCCEEEECCcCCCcc--------
Confidence                     369999999999999984 56777777765 5779999    688999999999999987532        


Q ss_pred             cchHHHHHHHHHHHHHHHhc
Q 012165          338 VEHVDHARQSAQHCIKALLS  357 (469)
Q Consensus       338 ~~~~~~A~~~a~~~a~~i~~  357 (469)
                        .+..|+.+|+.+|.+|..
T Consensus       446 --~~~~Ai~~G~~aA~~i~~  463 (467)
T TIGR01318       446 --LVVTAVAEGRQAAQGILD  463 (467)
T ss_pred             --HHHHHHHHHHHHHHHHHH
Confidence              345699999999998863

This model represents one of three built for the NADPH-dependent or NADH-dependent glutamate synthase (EC 1.4.1.13 and 1.4.1.14, respectively) small subunit and homologs. TIGR01317 describes the small subunit (or equivalent region from longer forms) in eukaryotes, Gram-positive bacteria, and some other lineages, both NADH and NADPH-dependent. TIGR01316 describes a protein of similar length, from Archaea and a number of bacterial lineages, that forms glutamate synthase homotetramers without a large subunit. This model describes both glutatate synthase small subunit and closely related paralogs of unknown function from a number of gamma and alpha subdivision Proteobacteria, including E. coli.

>PTZ00052 thioredoxin reductase; Provisional

Probab=100.00  E-value=6.2e-36  Score=305.97  Aligned_cols=377  Identities=18%  Similarity=0.217  Sum_probs=240.2

Q ss_pred             CCcEEEEcCcHHHHHHHHHHHHcCCCCCcEEEEcCCC----C----CCCC---CCCC-cccccC---------------C
Q 012165           51 NREFVIVGGGNAAGYAARTFVEHGMADGRLCIVSKEA----Y----APYE---RPAL-TKGYLF---------------P  103 (469)
Q Consensus        51 ~~~vvIIGgG~AGl~aA~~L~~~g~~~~~V~vie~~~----~----~~~~---~~~l-~~~~~~---------------~  103 (469)
                      ++||+||||||||++||..++++|.   +|+|||+..    .    ++..   +-.. +|.++.               +
T Consensus         5 ~yDviVIG~GpaG~~AA~~aa~~G~---~V~lie~~~~~~~~~~~~~GG~C~n~gciPsK~l~~~a~~~~~~~~~~~~~g   81 (499)
T PTZ00052          5 MYDLVVIGGGSGGMAAAKEAAAHGK---KVALFDYVKPSTQGTKWGLGGTCVNVGCVPKKLMHYAANIGSIFHHDSQMYG   81 (499)
T ss_pred             ccCEEEECCCHHHHHHHHHHHhCCC---eEEEEeccCCCCccccccccceeccccccchHHHHHHHHHHHHHHhHHhcCC
Confidence            5899999999999999999999987   899999632    1    1110   0000 110000               0


Q ss_pred             CC-CCCCCCCCCccccC---CCCCCCCHhHHHHCCcEEEeCCcEEEEeCCCcEEEeCC---CeEEEeccEEeccCCCCCc
Q 012165          104 LD-KKPARLPGFHTCVG---SGGERQTPEWYKEKGIEMIYQDPVTSIDIEKQTLITNS---GKLLKYGSLIVATGCTASR  176 (469)
Q Consensus       104 ~~-~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~i~~~~~~~v~~id~~~~~v~~~~---g~~~~yd~lVlAtG~~~~~  176 (469)
                      .. ....++..+.....   ..........++..+++++.+ ++...  +.++|.+.+   +..++||+||||||++|+.
T Consensus        82 ~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~v~~i~g-~a~~~--~~~~v~v~~~~~~~~i~~d~lIIATGs~p~~  158 (499)
T PTZ00052         82 WKTSSSFNWGKLVTTVQNHIRSLNFSYRTGLRSSKVEYING-LAKLK--DEHTVSYGDNSQEETITAKYILIATGGRPSI  158 (499)
T ss_pred             CCCCCCcCHHHHHHHHHHHHHHhhHHHHHHhhhcCcEEEEE-EEEEc--cCCEEEEeeCCCceEEECCEEEEecCCCCCC
Confidence            00 00000000000000   000000111223457777775 44433  345565532   3579999999999999874


Q ss_pred             CCCCCCCCcCcEEEecCHHHHHHHHHhhhcCCeEEEEcCChHHHHHHHHHHhCCCeEe-----------------eeHHH
Q 012165          177 FPEKIGGYLPGVHYIRDVADADALISSLEKAKKVVVVGGGYIGMEVAAAAVGWKLDTT-----------------RYEQL  239 (469)
Q Consensus       177 ~~~~~g~~~~~v~~~~~~~~~~~~~~~~~~~~~vvVvG~G~~g~e~A~~l~~~g~~v~-----------------~~~~~  239 (469)
                      ++.++|...    ...+   .+.+......+++++|||+|++|+|+|..|+++|.+|+                 .+.+.
T Consensus       159 p~~i~G~~~----~~~~---~~~~~~~~~~~~~vvIIGgG~iG~E~A~~l~~~G~~Vtli~~~~~l~~~d~~~~~~l~~~  231 (499)
T PTZ00052        159 PEDVPGAKE----YSIT---SDDIFSLSKDPGKTLIVGASYIGLETAGFLNELGFDVTVAVRSIPLRGFDRQCSEKVVEY  231 (499)
T ss_pred             CCCCCCccc----eeec---HHHHhhhhcCCCeEEEECCCHHHHHHHHHHHHcCCcEEEEEcCcccccCCHHHHHHHHHH
Confidence            334555321    1112   23333333457899999999999999999999999988                 44567


Q ss_pred             HHHcCcEEEcCCeEEEEEeCCCCcEEEEEcCCCCEEeCCEEEEccCCccCCchh--hhcCCccc-CCCEEeCCCCCCCCC
Q 012165          240 YQQNGVKFVKGASIKNLEAGSDGRVAAVKLEDGSTIDADTIVIGIGAKPTVSPF--ERVGLNSS-VGGIQVDGQFRTRMP  316 (469)
Q Consensus       240 l~~~gV~~~~~~~v~~i~~~~~~~v~~v~~~~g~~i~~D~vi~a~G~~p~~~~~--~~~gl~~~-~g~i~Vd~~~~t~~~  316 (469)
                      |++.||++++++.+.+++..+ +.+ .+.+.+|+++++|.||+++|++||++++  ++++++.+ +|++.+++. +|+.|
T Consensus       232 l~~~GV~i~~~~~v~~v~~~~-~~~-~v~~~~g~~i~~D~vl~a~G~~pn~~~l~l~~~g~~~~~~G~ii~~~~-~Ts~p  308 (499)
T PTZ00052        232 MKEQGTLFLEGVVPINIEKMD-DKI-KVLFSDGTTELFDTVLYATGRKPDIKGLNLNAIGVHVNKSNKIIAPND-CTNIP  308 (499)
T ss_pred             HHHcCCEEEcCCeEEEEEEcC-CeE-EEEECCCCEEEcCEEEEeeCCCCCccccCchhcCcEECCCCCEeeCCC-cCCCC
Confidence            888999999999999998543 333 4677889899999999999999999875  67888776 466777766 99999


Q ss_pred             ceEEeccccccCCccCCcccccchHHHHHHHHHHHHHHHhcCCC--CCCCCCCceeeecccccCCCcceeeEEeecCCC-
Q 012165          317 GIFAIGDVAAFPLKMYDRTARVEHVDHARQSAQHCIKALLSAQT--HTYDYLPYFYSRVFEYEGSPRKVWWQFFGDNVG-  393 (469)
Q Consensus       317 ~Vfa~GD~a~~~~~~~~~~~~~~~~~~A~~~a~~~a~~i~~~~~--~~~~~~p~~~~~~~~~~g~~~~~~~~~~G~~~~-  393 (469)
                      +|||+|||+....         ..+..|..+|+.+|+||++...  ..+..+|+   ..|..+-      +..+|.+.. 
T Consensus       309 ~IyAiGDv~~~~~---------~l~~~A~~~g~~aa~ni~g~~~~~~~~~~~p~---~ift~p~------ia~vGlte~~  370 (499)
T PTZ00052        309 NIFAVGDVVEGRP---------ELTPVAIKAGILLARRLFKQSNEFIDYTFIPT---TIFTPIE------YGACGYSSEA  370 (499)
T ss_pred             CEEEEEEecCCCc---------ccHHHHHHHHHHHHHHHhCCCCCcCccccCCe---EEecCCc------ceeecCCHHH
Confidence            9999999996321         1455699999999999986432  23445564   3343221      223332211 


Q ss_pred             --------cEEE------------------Ecc---------CCCcEEEEEEe---CCEEEEEEeecCChHHhHHH-HHH
Q 012165          394 --------ETIE------------------IGN---------FDPKIATFWID---SGKLKGVLVESGSPEEFQLL-PTL  434 (469)
Q Consensus       394 --------~~~~------------------~~~---------~~~~~~~~~~~---~~~l~g~~~~~~~~~~~~~~-~~~  434 (469)
                              ....                  .+.         ....|.|+.++   +++|+|+++++.++.++... ..+
T Consensus       371 A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~Kli~~~~~~~~IlG~~ivg~~A~elI~~~~~a  450 (499)
T PTZ00052        371 AIAKYGEDDIEEYLQEFNTLEIAAVHREKHERARKDEYDFDVSSNCLAKLVCVKSEDNKVVGFHFVGPNAGEITQGFSLA  450 (499)
T ss_pred             HHHhcCCCCEEEEEeecccchhhccccccccccccccccccccCCceEEEEEecCCCCEEEEEEEECCCHHHHHHHHHHH
Confidence                    0000                  000         01236677653   59999999988888776554 455


Q ss_pred             HhCCCCCCh--hhhcCCCcHHHHHHHHHh
Q 012165          435 ARSQPFVDK--AKLQQASSVEEALEIARA  461 (469)
Q Consensus       435 ~~~~~~~~~--~~~~~~~~~~~~~~~~~~  461 (469)
                      |+.+.+++.  ..++.|||+.|+++.|.-
T Consensus       451 i~~~~t~~~l~~~~~~hPt~sE~~~~~~~  479 (499)
T PTZ00052        451 LKLGAKKSDFDSMIGIHPTDAEVFMNLSV  479 (499)
T ss_pred             HHCCCCHHHHhcccccCCCCchhhEEEEe
Confidence            788877762  334689999999876543

>PRK12814 putative NADPH-dependent glutamate synthase small subunit; Provisional

Probab=100.00  E-value=5.8e-37  Score=322.26  Aligned_cols=318  Identities=23%  Similarity=0.261  Sum_probs=221.9

Q ss_pred             cccccccccccccccccCCCCcccccc--cCCccccccccccccc-------cc--CCCCCCcEEEEcCcHHHHHHHHHH
Q 012165            2 ASVSNSLSFKHGLSLWCPQSPSLHRIR--HSSAKNFQRRGFVVAY-------SS--FANENREFVIVGGGNAAGYAARTF   70 (469)
Q Consensus         2 ~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~-------~~--~~~~~~~vvIIGgG~AGl~aA~~L   70 (469)
                      ..++||||.+||++|+++|+..|.|..  .++.+..+.++..+..       .+  .....++|+|||||+||+++|..|
T Consensus       133 ~~~~~p~p~~~grvC~~~Ce~~C~r~~~~~~v~i~~l~r~~~~~~~~~~~~~~~~~~~~~~k~VaIIGaGpAGl~aA~~L  212 (652)
T PRK12814        133 IKETIPLPGILGRICPAPCEEACRRHGVDEPVSICALKRYAADRDMESAERYIPERAPKSGKKVAIIGAGPAGLTAAYYL  212 (652)
T ss_pred             HHhhCCccceeeCCcCchhhHHHcCCCCCCCcchhHHHHHHHHHHHhcCcccCCCCCCCCCCEEEEECCCHHHHHHHHHH
Confidence            357899999999999999999999876  6677777776655321       11  223568999999999999999999


Q ss_pred             HHcCCCCCcEEEEcCCCCCCCCCCCCcccccCCCCCCCCCCCCCccccCCCCCCCCHhHHHHCCcEEEeCCcEEEEeCCC
Q 012165           71 VEHGMADGRLCIVSKEAYAPYERPALTKGYLFPLDKKPARLPGFHTCVGSGGERQTPEWYKEKGIEMIYQDPVTSIDIEK  150 (469)
Q Consensus        71 ~~~g~~~~~V~vie~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~v~~id~~~  150 (469)
                      ++.|+   +|+|+|+++.++..   +.  +..+    ..+++.       .......+.+.+.|+++++++.+ +++   
T Consensus       213 a~~G~---~Vtv~e~~~~~GG~---l~--~gip----~~~~~~-------~~~~~~~~~l~~~Gv~i~~~~~v-~~d---  269 (652)
T PRK12814        213 LRKGH---DVTIFDANEQAGGM---MR--YGIP----RFRLPE-------SVIDADIAPLRAMGAEFRFNTVF-GRD---  269 (652)
T ss_pred             HHCCC---cEEEEecCCCCCce---ee--ecCC----CCCCCH-------HHHHHHHHHHHHcCCEEEeCCcc-cCc---
Confidence            99987   79999998764311   00  0001    011110       00112345667889999987543 222   


Q ss_pred             cEEEeCCCeEEEeccEEeccCCCCCcCCCCCCCCcCcEEEecCHHHHHHHHHhhhcCCeEEEEcCChHHHHHHHHHHhCC
Q 012165          151 QTLITNSGKLLKYGSLIVATGCTASRFPEKIGGYLPGVHYIRDVADADALISSLEKAKKVVVVGGGYIGMEVAAAAVGWK  230 (469)
Q Consensus       151 ~~v~~~~g~~~~yd~lVlAtG~~~~~~~~~~g~~~~~v~~~~~~~~~~~~~~~~~~~~~vvVvG~G~~g~e~A~~l~~~g  230 (469)
                        +++++.. ..||+||||||+.+...+.++|.+.++++...++............+++|+|||+|.+|+|+|..+.++|
T Consensus       270 --v~~~~~~-~~~DaVilAtGa~~~~~~~ipG~~~~gv~~~~~~l~~~~~~~~~~~gk~VvVIGgG~~a~e~A~~l~~~G  346 (652)
T PRK12814        270 --ITLEELQ-KEFDAVLLAVGAQKASKMGIPGEELPGVISGIDFLRNVALGTALHPGKKVVVIGGGNTAIDAARTALRLG  346 (652)
T ss_pred             --cCHHHHH-hhcCEEEEEcCCCCCCCCCCCCcCcCCcEeHHHHHHHhhcCCcccCCCeEEEECCCHHHHHHHHHHHHcC
Confidence              2222211 3599999999998654456778777777653222211111112356899999999999999999999998


Q ss_pred             C-eEe---------------eeHHHHHHcCcEEEcCCeEEEEEeCCCCc-EEEEEcC---------------CC--CEEe
Q 012165          231 L-DTT---------------RYEQLYQQNGVKFVKGASIKNLEAGSDGR-VAAVKLE---------------DG--STID  276 (469)
Q Consensus       231 ~-~v~---------------~~~~~l~~~gV~~~~~~~v~~i~~~~~~~-v~~v~~~---------------~g--~~i~  276 (469)
                      . +|+               .+.+ ..+.||+++++..+.++...+++. +..+.+.               +|  .+++
T Consensus       347 a~~Vtlv~r~~~~~mpa~~~ei~~-a~~eGV~i~~~~~~~~i~~~~~~~~v~~~~~~~~~~d~~G~~~~~~~~g~~~~i~  425 (652)
T PRK12814        347 AESVTILYRRTREEMPANRAEIEE-ALAEGVSLRELAAPVSIERSEGGLELTAIKMQQGEPDESGRRRPVPVEGSEFTLQ  425 (652)
T ss_pred             CCeEEEeeecCcccCCCCHHHHHH-HHHcCCcEEeccCcEEEEecCCeEEEEEEEEEecccCCCCCCcceecCCceEEEE
Confidence            6 465               1222 346799999999998887532221 2222221               22  2599


Q ss_pred             CCEEEEccCCccCCchhhhcCCccc-CCCEEeCC-CCCCCCCceEEeccccccCCccCCcccccchHHHHHHHHHHHHHH
Q 012165          277 ADTIVIGIGAKPTVSPFERVGLNSS-VGGIQVDG-QFRTRMPGIFAIGDVAAFPLKMYDRTARVEHVDHARQSAQHCIKA  354 (469)
Q Consensus       277 ~D~vi~a~G~~p~~~~~~~~gl~~~-~g~i~Vd~-~~~t~~~~Vfa~GD~a~~~~~~~~~~~~~~~~~~A~~~a~~~a~~  354 (469)
                      +|.||+++|..|++++++..++..+ +|+|.||+ +++|+.|+|||+||++..+.          .+..|+.+|+.+|.+
T Consensus       426 ~D~VI~AiG~~p~~~ll~~~gl~~~~~G~I~vd~~~~~Ts~pgVfA~GDv~~g~~----------~v~~Ai~~G~~AA~~  495 (652)
T PRK12814        426 ADTVISAIGQQVDPPIAEAAGIGTSRNGTVKVDPETLQTSVAGVFAGGDCVTGAD----------IAINAVEQGKRAAHA  495 (652)
T ss_pred             CCEEEECCCCcCCcccccccCccccCCCcEeeCCCCCcCCCCCEEEcCCcCCCch----------HHHHHHHHHHHHHHH
Confidence            9999999999999999988888876 57899996 68999999999999987543          455688889988888


Q ss_pred             Hh
Q 012165          355 LL  356 (469)
Q Consensus       355 i~  356 (469)
                      |.
T Consensus       496 I~  497 (652)
T PRK12814        496 ID  497 (652)
T ss_pred             HH
Confidence            74

>TIGR03169 Nterm_to_SelD pyridine nucleotide-disulfide oxidoreductase family protein

Probab=100.00  E-value=8.7e-36  Score=295.31  Aligned_cols=276  Identities=22%  Similarity=0.315  Sum_probs=211.5

Q ss_pred             cEEEEcCcHHHHHHHHHHHHcCCCCCcEEEEcCCCCCCCCCCCCcccccCCCCCCCCCCCCCccccCCCCCCCCHhHHHH
Q 012165           53 EFVIVGGGNAAGYAARTFVEHGMADGRLCIVSKEAYAPYERPALTKGYLFPLDKKPARLPGFHTCVGSGGERQTPEWYKE  132 (469)
Q Consensus        53 ~vvIIGgG~AGl~aA~~L~~~g~~~~~V~vie~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  132 (469)
                      +|||||||+||+.+|.+|+++..++.+|+|||++++++|.. .++. ++.+ .....++           .....+++++
T Consensus         1 ~vvIiGgG~aG~~~a~~l~~~~~~~~~I~li~~~~~~~~~~-~~~~-~~~g-~~~~~~~-----------~~~~~~~~~~   66 (364)
T TIGR03169         1 HLVLIGGGHTHALVLRRWAMKPLPGVRVTLINPSSTTPYSG-MLPG-MIAG-HYSLDEI-----------RIDLRRLARQ   66 (364)
T ss_pred             CEEEECCcHHHHHHHHHhcCcCCCCCEEEEECCCCCCcccc-hhhH-HHhe-eCCHHHh-----------cccHHHHHHh
Confidence            58999999999999999986633467999999999988773 3332 2211 1111111           1234567788


Q ss_pred             CCcEEEeCCcEEEEeCCCcEEEeCCCeEEEeccEEeccCCCCCcCCCCCCCCcCcEEEecCHHHHHH----HHHhh---h
Q 012165          133 KGIEMIYQDPVTSIDIEKQTLITNSGKLLKYGSLIVATGCTASRFPEKIGGYLPGVHYIRDVADADA----LISSL---E  205 (469)
Q Consensus       133 ~~i~~~~~~~v~~id~~~~~v~~~~g~~~~yd~lVlAtG~~~~~~~~~~g~~~~~v~~~~~~~~~~~----~~~~~---~  205 (469)
                      ++++++.+ +|+.+|+++++|.+++|++++||+||||||+.+. .|.++|. .++++.+++..++..    +.+..   .
T Consensus        67 ~gv~~~~~-~v~~id~~~~~V~~~~g~~~~yD~LviAtG~~~~-~~~i~g~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~  143 (364)
T TIGR03169        67 AGARFVIA-EATGIDPDRRKVLLANRPPLSYDVLSLDVGSTTP-LSGVEGA-ADLAVPVKPIENFLARWEALLESADAPP  143 (364)
T ss_pred             cCCEEEEE-EEEEEecccCEEEECCCCcccccEEEEccCCCCC-CCCCCcc-cccccccCCHHHHHHHHHHHHHHHhcCC
Confidence            89999885 8999999999999999988999999999999987 5666663 455666777666554    33322   1


Q ss_pred             cCCeEEEEcCChHHHHHHHHHHh----CC--CeEe-----------------eeHHHHHHcCcEEEcCCeEEEEEeCCCC
Q 012165          206 KAKKVVVVGGGYIGMEVAAAAVG----WK--LDTT-----------------RYEQLYQQNGVKFVKGASIKNLEAGSDG  262 (469)
Q Consensus       206 ~~~~vvVvG~G~~g~e~A~~l~~----~g--~~v~-----------------~~~~~l~~~gV~~~~~~~v~~i~~~~~~  262 (469)
                      .+++++|+|+|++|+|+|..|.+    ++  .+++                 .+.+.+++.||++++++.+++++.  + 
T Consensus       144 ~~~~vvVvG~G~~g~E~A~~l~~~~~~~g~~~~V~li~~~~~l~~~~~~~~~~~~~~l~~~gV~v~~~~~v~~i~~--~-  220 (364)
T TIGR03169       144 GTKRLAVVGGGAAGVEIALALRRRLPKRGLRGQVTLIAGASLLPGFPAKVRRLVLRLLARRGIEVHEGAPVTRGPD--G-  220 (364)
T ss_pred             CCceEEEECCCHHHHHHHHHHHHHHHhcCCCceEEEEeCCcccccCCHHHHHHHHHHHHHCCCEEEeCCeeEEEcC--C-
Confidence            45799999999999999999875    23  2444                 456778899999999999999863  2 


Q ss_pred             cEEEEEcCCCCEEeCCEEEEccCCccCCchhhhcCCccc-CCCEEeCCCCCC-CCCceEEeccccccCCccCCcccccch
Q 012165          263 RVAAVKLEDGSTIDADTIVIGIGAKPTVSPFERVGLNSS-VGGIQVDGQFRT-RMPGIFAIGDVAAFPLKMYDRTARVEH  340 (469)
Q Consensus       263 ~v~~v~~~~g~~i~~D~vi~a~G~~p~~~~~~~~gl~~~-~g~i~Vd~~~~t-~~~~Vfa~GD~a~~~~~~~~~~~~~~~  340 (469)
                         .+.+++|+++++|.+|+++|.+|+ .++...++..+ .|++.||+++|| ++|||||+|||+..+....     ...
T Consensus       221 ---~v~~~~g~~i~~D~vi~a~G~~p~-~~l~~~gl~~~~~g~i~vd~~l~~~~~~~Iya~GD~~~~~~~~~-----~~~  291 (364)
T TIGR03169       221 ---ALILADGRTLPADAILWATGARAP-PWLAESGLPLDEDGFLRVDPTLQSLSHPHVFAAGDCAVITDAPR-----PKA  291 (364)
T ss_pred             ---eEEeCCCCEEecCEEEEccCCChh-hHHHHcCCCcCCCCeEEECCccccCCCCCEEEeeeeeecCCCCC-----CCc
Confidence               467788999999999999999998 46677777764 588999999998 9999999999998653211     123


Q ss_pred             HHHHHHHHHHHHHHHhc
Q 012165          341 VDHARQSAQHCIKALLS  357 (469)
Q Consensus       341 ~~~A~~~a~~~a~~i~~  357 (469)
                      ...|..||+.+|+||..
T Consensus       292 ~~~A~~~g~~~a~ni~~  308 (364)
T TIGR03169       292 GVYAVRQAPILAANLRA  308 (364)
T ss_pred             hHHHHHhHHHHHHHHHH
Confidence            45689999999999864

Members of this protein family include N-terminal sequence regions of (probable) bifunctional proteins whose C-terminal sequences are SelD, or selenide,water dikinase, the selenium donor protein necessary for selenium incorporation into protein (as selenocysteine), tRNA (as 2-selenouridine), or both. However, some members of this family occur in species that do not show selenium incorporation, and the function of this protein family is unknown.

>PRK12769 putative oxidoreductase Fe-S binding subunit; Reviewed

Probab=100.00  E-value=3.5e-36  Score=317.83  Aligned_cols=319  Identities=20%  Similarity=0.224  Sum_probs=228.0

Q ss_pred             cccccccccccccccc--CCCCcccccc--cCCccccccccccccc------c---cCCCCCCcEEEEcCcHHHHHHHHH
Q 012165            3 SVSNSLSFKHGLSLWC--PQSPSLHRIR--HSSAKNFQRRGFVVAY------S---SFANENREFVIVGGGNAAGYAART   69 (469)
Q Consensus         3 ~~~~~~~~~~~~~~~~--~~~~~~~~~~--~~~~~~~~~~~~~~~~------~---~~~~~~~~vvIIGgG~AGl~aA~~   69 (469)
                      .++||||.+|||+||+  +|+.+|++..  .+|++..++|++.+..      +   +...+.++|+|||||||||+||..
T Consensus       266 ~~~np~p~~~grvCp~~~~Ce~~C~~~~~~~~v~I~~l~r~~~d~~~~~~~~~~~~~~~~~~~~VaIIGaGpAGLsaA~~  345 (654)
T PRK12769        266 HQTNSLPEITGRVCPQDRLCEGACTLRDEYGAVTIGNIERYISDQALAKGWRPDLSQVTKSDKRVAIIGAGPAGLACADV  345 (654)
T ss_pred             HHhCCchhHhcccCCCCCChHHhccCCCCCCCeecCHHHHHHHHHHHHhCCCCCCcccccCCCEEEEECCCHHHHHHHHH
Confidence            5789999999999995  8999999976  7899999988765431      1   112356899999999999999999


Q ss_pred             HHHcCCCCCcEEEEcCCCCCCCCCCCCcccccCCCCCCCCCCCCCccccCCCCCCCCHhHHHHCCcEEEeCCcEEEEeCC
Q 012165           70 FVEHGMADGRLCIVSKEAYAPYERPALTKGYLFPLDKKPARLPGFHTCVGSGGERQTPEWYKEKGIEMIYQDPVTSIDIE  149 (469)
Q Consensus        70 L~~~g~~~~~V~vie~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~v~~id~~  149 (469)
                      |++.|+   +|+|+|+.+.++..   +.  +-.+    ..+++.       +...+..+++++.|++++.++.+.     
T Consensus       346 L~~~G~---~V~V~E~~~~~GG~---l~--~gip----~~~l~~-------~~~~~~~~~~~~~Gv~~~~~~~v~-----  401 (654)
T PRK12769        346 LARNGV---AVTVYDRHPEIGGL---LT--FGIP----AFKLDK-------SLLARRREIFSAMGIEFELNCEVG-----  401 (654)
T ss_pred             HHHCCC---eEEEEecCCCCCce---ee--ecCC----CccCCH-------HHHHHHHHHHHHCCeEEECCCEeC-----
Confidence            999998   79999987654311   00  0001    011110       001223466788899999886552     


Q ss_pred             CcEEEeCCCeEEEeccEEeccCCCCCcCCCCCCCCcCcEEEecCHH--HHHHHHH---------hhhcCCeEEEEcCChH
Q 012165          150 KQTLITNSGKLLKYGSLIVATGCTASRFPEKIGGYLPGVHYIRDVA--DADALIS---------SLEKAKKVVVVGGGYI  218 (469)
Q Consensus       150 ~~~v~~~~g~~~~yd~lVlAtG~~~~~~~~~~g~~~~~v~~~~~~~--~~~~~~~---------~~~~~~~vvVvG~G~~  218 (469)
                       ..+.+.+. ...||+|++|||+.....+.+++.+.+|++...++.  ....+..         ....+++|+|||+|.+
T Consensus       402 -~~i~~~~~-~~~~DavilAtGa~~~~~l~i~g~~~~Gv~~a~~~l~~~~~~~~~~~~~~~~~~~~~~gk~VvVIGgG~~  479 (654)
T PRK12769        402 -KDISLESL-LEDYDAVFVGVGTYRSMKAGLPNEDAPGVYDALPFLIANTKQVMGLEELPEEPFINTAGLNVVVLGGGDT  479 (654)
T ss_pred             -CcCCHHHH-HhcCCEEEEeCCCCCCCCCCCCCCCCCCeEEhHHHHHHHHhhhccCccccccccccCCCCeEEEECCcHH
Confidence             11111111 137999999999875444566777778876532211  0011100         0124689999999999


Q ss_pred             HHHHHHHHHhCCC-eEe--------------eeHHHHHHcCcEEEcCCeEEEEEeCCCCcEEEEEcC---------CC--
Q 012165          219 GMEVAAAAVGWKL-DTT--------------RYEQLYQQNGVKFVKGASIKNLEAGSDGRVAAVKLE---------DG--  272 (469)
Q Consensus       219 g~e~A~~l~~~g~-~v~--------------~~~~~l~~~gV~~~~~~~v~~i~~~~~~~v~~v~~~---------~g--  272 (469)
                      |+++|..+.++|. +|+              ...+.+++.||+++++..+.++..++++++.+|++.         +|  
T Consensus       480 a~d~A~~a~r~ga~~Vt~i~~~~~~~~~~~~~e~~~~~~~Gv~~~~~~~~~~i~~~~~g~v~~v~~~~~~~~~~~~~G~~  559 (654)
T PRK12769        480 AMDCVRTALRHGASNVTCAYRRDEANMPGSKKEVKNAREEGANFEFNVQPVALELNEQGHVCGIRFLRTRLGEPDAQGRR  559 (654)
T ss_pred             HHHHHHHHHHcCCCeEEEeEecCCCCCCCCHHHHHHHHHcCCeEEeccCcEEEEECCCCeEEEEEEEEEEecCcCCCCCC
Confidence            9999999888886 465              124457789999999999999975556777666541         22  


Q ss_pred             ---------CEEeCCEEEEccCCccCC-chhhhcCCccc-CCCEEeCC----CCCCCCCceEEeccccccCCccCCcccc
Q 012165          273 ---------STIDADTIVIGIGAKPTV-SPFERVGLNSS-VGGIQVDG----QFRTRMPGIFAIGDVAAFPLKMYDRTAR  337 (469)
Q Consensus       273 ---------~~i~~D~vi~a~G~~p~~-~~~~~~gl~~~-~g~i~Vd~----~~~t~~~~Vfa~GD~a~~~~~~~~~~~~  337 (469)
                               .++++|.||+|+|+.|+. .+++..+++.+ +|.|.||+    +++|+.|+|||+||++..+.        
T Consensus       560 ~~~~~~g~~~~i~~D~Vi~AiG~~p~~~~~~~~~gl~~~~~G~i~vd~~~~~~~~Ts~~gVfAaGD~~~g~~--------  631 (654)
T PRK12769        560 RPVPIPGSEFVMPADAVIMAFGFNPHGMPWLESHGVTVDKWGRIIADVESQYRYQTSNPKIFAGGDAVRGAD--------  631 (654)
T ss_pred             cceeCCCceEEEECCEEEECccCCCCccccccccCCcCCCCCCEEeCCCcccCcccCCCCEEEcCCcCCCCc--------
Confidence                     259999999999999985 57788888876 57789985    48999999999999987543        


Q ss_pred             cchHHHHHHHHHHHHHHHhc
Q 012165          338 VEHVDHARQSAQHCIKALLS  357 (469)
Q Consensus       338 ~~~~~~A~~~a~~~a~~i~~  357 (469)
                        .+..|+.+|+.+|.+|..
T Consensus       632 --~vv~Ai~~Gr~AA~~I~~  649 (654)
T PRK12769        632 --LVVTAMAEGRHAAQGIID  649 (654)
T ss_pred             --HHHHHHHHHHHHHHHHHH
Confidence              445699999999999864

>KOG1335 consensus Dihydrolipoamide dehydrogenase [Energy production and conversion]

Probab=100.00  E-value=3.9e-35  Score=270.75  Aligned_cols=385  Identities=21%  Similarity=0.355  Sum_probs=261.3

Q ss_pred             CCCcEEEEcCcHHHHHHHHHHHHcCCCCCcEEEEcCCCCCCCC---C-CCCcccccCCC------------------CCC
Q 012165           50 ENREFVIVGGGNAAGYAARTFVEHGMADGRLCIVSKEAYAPYE---R-PALTKGYLFPL------------------DKK  107 (469)
Q Consensus        50 ~~~~vvIIGgG~AGl~aA~~L~~~g~~~~~V~vie~~~~~~~~---~-~~l~~~~~~~~------------------~~~  107 (469)
                      ..+|++|||+||+|..||...++.|+   +-..||++..++..   . +--||.++...                  ...
T Consensus        38 ~d~DvvvIG~GpGGyvAAikAaQlGl---kTacvEkr~~LGGTcLnvGcIPSKALL~nSh~yh~~q~~~~~~rGi~vs~~  114 (506)
T KOG1335|consen   38 NDYDVVVIGGGPGGYVAAIKAAQLGL---KTACVEKRGTLGGTCLNVGCIPSKALLNNSHLYHEAQHEDFASRGIDVSSV  114 (506)
T ss_pred             ccCCEEEECCCCchHHHHHHHHHhcc---eeEEEeccCccCceeeeccccccHHHhhhhHHHHHHhhhHHHhcCccccce
Confidence            56999999999999999999999998   67888887654321   0 00122222110                  000


Q ss_pred             CCCCCCCcccc---CCCCCCCCHhHHHHCCcEEEeCCcEEEEeCCCcEEEeCCCe--EEEeccEEeccCCCCCcCCCCCC
Q 012165          108 PARLPGFHTCV---GSGGERQTPEWYKEKGIEMIYQDPVTSIDIEKQTLITNSGK--LLKYGSLIVATGCTASRFPEKIG  182 (469)
Q Consensus       108 ~~~~~~~~~~~---~~~~~~~~~~~~~~~~i~~~~~~~v~~id~~~~~v~~~~g~--~~~yd~lVlAtG~~~~~~~~~~g  182 (469)
                      ..+++.+....   -.....-....+++++++++.| .-.-+++..-.+.-.||+  .+.++++||||||.-..+   ||
T Consensus       115 ~~dl~~~~~~k~~~vk~Lt~gi~~lfkknkV~~~kG-~gsf~~p~~V~v~k~dg~~~ii~aKnIiiATGSeV~~~---PG  190 (506)
T KOG1335|consen  115 SLDLQAMMKAKDNAVKQLTGGIENLFKKNKVTYVKG-FGSFLDPNKVSVKKIDGEDQIIKAKNIIIATGSEVTPF---PG  190 (506)
T ss_pred             ecCHHHHHHHHHHHHHHHhhHHHHHhhhcCeEEEee-eEeecCCceEEEeccCCCceEEeeeeEEEEeCCccCCC---CC
Confidence            11111100000   0000011223456778888876 444566666566666664  689999999999964323   34


Q ss_pred             CCcCcEEEecCHHHHHHHHHhhhcCCeEEEEcCChHHHHHHHHHHhCCCeEe------------------eeHHHHHHcC
Q 012165          183 GYLPGVHYIRDVADADALISSLEKAKKVVVVGGGYIGMEVAAAAVGWKLDTT------------------RYEQLYQQNG  244 (469)
Q Consensus       183 ~~~~~v~~~~~~~~~~~~~~~~~~~~~vvVvG~G~~g~e~A~~l~~~g~~v~------------------~~~~~l~~~g  244 (469)
                      -.+++-.-.    .+...+...+-+++++|||+|.+|+|+...+.++|.+||                  .+++.|++.|
T Consensus       191 I~IDekkIV----SStgALsL~~vPk~~~viG~G~IGLE~gsV~~rLGseVT~VEf~~~i~~~mD~Eisk~~qr~L~kQg  266 (506)
T KOG1335|consen  191 ITIDEKKIV----SSTGALSLKEVPKKLTVIGAGYIGLEMGSVWSRLGSEVTVVEFLDQIGGVMDGEISKAFQRVLQKQG  266 (506)
T ss_pred             eEecCceEE----ecCCccchhhCcceEEEEcCceeeeehhhHHHhcCCeEEEEEehhhhccccCHHHHHHHHHHHHhcC
Confidence            333332211    122223334568999999999999999999999999998                  5678899999


Q ss_pred             cEEEcCCeEEEEEeCCCCcEEEEEcCC---C--CEEeCCEEEEccCCccCCch--hhhcCCccc-CCCEEeCCCCCCCCC
Q 012165          245 VKFVKGASIKNLEAGSDGRVAAVKLED---G--STIDADTIVIGIGAKPTVSP--FERVGLNSS-VGGIQVDGQFRTRMP  316 (469)
Q Consensus       245 V~~~~~~~v~~i~~~~~~~v~~v~~~~---g--~~i~~D~vi~a~G~~p~~~~--~~~~gl~~~-~g~i~Vd~~~~t~~~  316 (469)
                      ++|++++++...+.+.+|.+ .+++.+   +  ++++||.+++++|++|-+.-  +++.|++.| ++.|.||..++|.+|
T Consensus       267 ikF~l~tkv~~a~~~~dg~v-~i~ve~ak~~k~~tle~DvlLVsiGRrP~t~GLgle~iGi~~D~r~rv~v~~~f~t~vP  345 (506)
T KOG1335|consen  267 IKFKLGTKVTSATRNGDGPV-EIEVENAKTGKKETLECDVLLVSIGRRPFTEGLGLEKIGIELDKRGRVIVNTRFQTKVP  345 (506)
T ss_pred             ceeEeccEEEEeeccCCCce-EEEEEecCCCceeEEEeeEEEEEccCcccccCCChhhcccccccccceeccccccccCC
Confidence            99999999999998878755 455543   2  57999999999999998764  677888876 678999999999999


Q ss_pred             ceEEeccccccCCccCCcccccchHHHHHHHHHHHHHHHhcCC-CCCCCCCCceeeecccccCCCcceeeEEeecCCCcE
Q 012165          317 GIFAIGDVAAFPLKMYDRTARVEHVDHARQSAQHCIKALLSAQ-THTYDYLPYFYSRVFEYEGSPRKVWWQFFGDNVGET  395 (469)
Q Consensus       317 ~Vfa~GD~a~~~~~~~~~~~~~~~~~~A~~~a~~~a~~i~~~~-~~~~~~~p~~~~~~~~~~g~~~~~~~~~~G~~~~~~  395 (469)
                      +||++||+...|..        .|  -|..+|-.+.+.|.++. -..|.-+|-   ..|.++-      +.++|.++...
T Consensus       346 ~i~~IGDv~~gpML--------Ah--kAeeegI~~VE~i~g~~~hv~ynciP~---v~ythPE------vawVG~TEeql  406 (506)
T KOG1335|consen  346 HIYAIGDVTLGPML--------AH--KAEEEGIAAVEGIAGGHGHVDYNCIPS---VVYTHPE------VAWVGKTEEQL  406 (506)
T ss_pred             ceEEecccCCcchh--------hh--hhhhhchhheeeecccCcccccCCCCc---eeecccc------eeeeccchhhH
Confidence            99999999988762        23  38889998888887654 345666673   4555543      34455543211


Q ss_pred             ------EEEccC-------------CCcEEEEEE--eCCEEEEEEeecCChHHhHH-HHHHHhCCCCCChhh-h-cCCCc
Q 012165          396 ------IEIGNF-------------DPKIATFWI--DSGKLKGVLVESGSPEEFQL-LPTLARSQPFVDKAK-L-QQASS  451 (469)
Q Consensus       396 ------~~~~~~-------------~~~~~~~~~--~~~~l~g~~~~~~~~~~~~~-~~~~~~~~~~~~~~~-~-~~~~~  451 (469)
                            +..|.+             ...|.++..  +++||+|++++++++.++.. ....++-+...+... + +.||+
T Consensus       407 keegi~y~vgkfpF~aNsRaktn~d~eg~vKvl~d~~tdkiLGvHiigp~AgEli~EA~lAieyGasaeDvarvchaHPT  486 (506)
T KOG1335|consen  407 KEEGIKYKVGKFPFSANSRAKTNNDTEGFVKVLADKETDKILGVHIIGPNAGELIHEASLAIEYGASAEDVARVCHAHPT  486 (506)
T ss_pred             HhcCcceEeeeccccccchhhccCCccceeEEEecCCCCcEEEEEEecCCHHHHHHHHHHHHHhCccHHHHhhccCCCCc
Confidence                  112221             123666655  46999999998888866554 344456666665433 2 78999


Q ss_pred             HHHHHHHHHhcCCc
Q 012165          452 VEEALEIARAALPV  465 (469)
Q Consensus       452 ~~~~~~~~~~~~~~  465 (469)
                      ++|++++|.++++.
T Consensus       487 lSEa~kEa~~aA~~  500 (506)
T KOG1335|consen  487 LSEAFKEANMAAYD  500 (506)
T ss_pred             HHHHHHHHHHHhhc
Confidence            99999999998876

>PRK13984 putative oxidoreductase; Provisional

Probab=100.00  E-value=2e-35  Score=310.29  Aligned_cols=313  Identities=20%  Similarity=0.230  Sum_probs=218.7

Q ss_pred             ccccccccccccccccCCCCcccccc--cCCccccccccccccc----------ccCCCCCCcEEEEcCcHHHHHHHHHH
Q 012165            3 SVSNSLSFKHGLSLWCPQSPSLHRIR--HSSAKNFQRRGFVVAY----------SSFANENREFVIVGGGNAAGYAARTF   70 (469)
Q Consensus         3 ~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~----------~~~~~~~~~vvIIGgG~AGl~aA~~L   70 (469)
                      ..+||||.+||++|+++|+.+|.+..  .++.+..++|...+..          .+.....++|+|||+|+||+++|..|
T Consensus       223 ~~~np~~~~~g~vC~~~Ce~~C~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~IIGaG~aGl~aA~~L  302 (604)
T PRK13984        223 YKTNPLSMVCGRVCTHKCETVCSIGHRGEPIAIRWLKRYIVDNVPVEKYSEILDDEPEKKNKKVAIVGSGPAGLSAAYFL  302 (604)
T ss_pred             HhcCCccchhhCcCCchHHHhhcccCCCCCeEeCcHHHHHHhHHHHcCcccccCCCcccCCCeEEEECCCHHHHHHHHHH
Confidence            35799999999999999999999975  6777776665433221          11234578999999999999999999


Q ss_pred             HHcCCCCCcEEEEcCCCCCCCCCCCCcccccCCCCCCCCCCCCCccccCCCCCCCCHhHHHHCCcEEEeCCcEEEEeCCC
Q 012165           71 VEHGMADGRLCIVSKEAYAPYERPALTKGYLFPLDKKPARLPGFHTCVGSGGERQTPEWYKEKGIEMIYQDPVTSIDIEK  150 (469)
Q Consensus        71 ~~~g~~~~~V~vie~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~v~~id~~~  150 (469)
                      ++.|+   +|+|+|+++.....   +.  +..+......++           ..+..+++++.|++++.++.|.. +   
T Consensus       303 ~~~G~---~v~vie~~~~~gG~---~~--~~i~~~~~~~~~-----------~~~~~~~~~~~gv~~~~~~~v~~-~---  359 (604)
T PRK13984        303 ATMGY---EVTVYESLSKPGGV---MR--YGIPSYRLPDEA-----------LDKDIAFIEALGVKIHLNTRVGK-D---  359 (604)
T ss_pred             HHCCC---eEEEEecCCCCCce---Ee--ecCCcccCCHHH-----------HHHHHHHHHHCCcEEECCCEeCC-c---
Confidence            99987   79999988764311   00  101101000000           12234678889999999866521 1   


Q ss_pred             cEEEeCCCeEEEeccEEeccCCCCCcCCCCCCCCcCcEEEecCHHHHHHHHHhh-------hcCCeEEEEcCChHHHHHH
Q 012165          151 QTLITNSGKLLKYGSLIVATGCTASRFPEKIGGYLPGVHYIRDVADADALISSL-------EKAKKVVVVGGGYIGMEVA  223 (469)
Q Consensus       151 ~~v~~~~g~~~~yd~lVlAtG~~~~~~~~~~g~~~~~v~~~~~~~~~~~~~~~~-------~~~~~vvVvG~G~~g~e~A  223 (469)
                        +..++ ....||+||+|||+.+.+.+.++|.+.+++++..  .....+...+       ..+++++|||||++|+|+|
T Consensus       360 --~~~~~-~~~~yD~vilAtGa~~~r~l~i~G~~~~gv~~a~--~~l~~~~~~~~~~~~~~~~~k~VvVIGGG~~g~e~A  434 (604)
T PRK13984        360 --IPLEE-LREKHDAVFLSTGFTLGRSTRIPGTDHPDVIQAL--PLLREIRDYLRGEGPKPKIPRSLVVIGGGNVAMDIA  434 (604)
T ss_pred             --CCHHH-HHhcCCEEEEEcCcCCCccCCCCCcCCcCeEeHH--HHHHHHHhhhccCCCcCCCCCcEEEECCchHHHHHH
Confidence              11111 1357999999999875445667787777776532  2222222211       2368999999999999999


Q ss_pred             HHHHhCCC------eEe----------------eeHHHHHHcCcEEEcCCeEEEEEeCCCCcEEEEEcC--------CC-
Q 012165          224 AAAVGWKL------DTT----------------RYEQLYQQNGVKFVKGASIKNLEAGSDGRVAAVKLE--------DG-  272 (469)
Q Consensus       224 ~~l~~~g~------~v~----------------~~~~~l~~~gV~~~~~~~v~~i~~~~~~~v~~v~~~--------~g-  272 (469)
                      ..+.+++.      +++                .+.+ +.+.||+++++..+.++.. +++++..+++.        +| 
T Consensus       435 ~~l~r~~~~~~g~~~V~v~~~~r~~~~~~~~~~e~~~-~~~~GV~i~~~~~~~~i~~-~~g~v~~v~~~~~~~~~~~~G~  512 (604)
T PRK13984        435 RSMARLQKMEYGEVNVKVTSLERTFEEMPADMEEIEE-GLEEGVVIYPGWGPMEVVI-ENDKVKGVKFKKCVEVFDEEGR  512 (604)
T ss_pred             HHHHhccccccCceEEEEeccccCcccCCCCHHHHHH-HHHcCCEEEeCCCCEEEEc-cCCEEEEEEEEEEeeccCCCCC
Confidence            99988753      343                1122 3468999999988888864 35666555432        12 


Q ss_pred             ----------CEEeCCEEEEccCCccCCchhhh---cCCcccCCCEEeCCCCCCCCCceEEeccccccCCccCCcccccc
Q 012165          273 ----------STIDADTIVIGIGAKPTVSPFER---VGLNSSVGGIQVDGQFRTRMPGIFAIGDVAAFPLKMYDRTARVE  339 (469)
Q Consensus       273 ----------~~i~~D~vi~a~G~~p~~~~~~~---~gl~~~~g~i~Vd~~~~t~~~~Vfa~GD~a~~~~~~~~~~~~~~  339 (469)
                                +++++|.||+++|++|+++++..   .++..++|+|.||+++||++|+|||+|||+..+.          
T Consensus       513 ~~~~~~~g~~~~i~aD~Vi~aiG~~p~~~~l~~~~~~~l~~~~G~i~vd~~~~Ts~~gVfAaGD~~~~~~----------  582 (604)
T PRK13984        513 FNPKFDESDQIIVEADMVVEAIGQAPDYSYLPEELKSKLEFVRGRILTNEYGQTSIPWLFAGGDIVHGPD----------  582 (604)
T ss_pred             ccceecCCceEEEECCEEEEeeCCCCChhhhhhhhccCccccCCeEEeCCCCccCCCCEEEecCcCCchH----------
Confidence                      36999999999999999887653   2355556789999999999999999999997542          


Q ss_pred             hHHHHHHHHHHHHHHHh
Q 012165          340 HVDHARQSAQHCIKALL  356 (469)
Q Consensus       340 ~~~~A~~~a~~~a~~i~  356 (469)
                       ...|+.+|+.+|.+|.
T Consensus       583 -~v~Ai~~G~~AA~~I~  598 (604)
T PRK13984        583 -IIHGVADGYWAAEGID  598 (604)
T ss_pred             -HHHHHHHHHHHHHHHH
Confidence             2458888999888875

>TIGR01317 GOGAT_sm_gam glutamate synthases, NADH/NADPH, small subunit

Probab=100.00  E-value=3.4e-35  Score=299.15  Aligned_cols=318  Identities=19%  Similarity=0.271  Sum_probs=218.8

Q ss_pred             ccccccccccccccccCCCCcccccc--cCCccccccccccccc------c---cCCCCCCcEEEEcCcHHHHHHHHHHH
Q 012165            3 SVSNSLSFKHGLSLWCPQSPSLHRIR--HSSAKNFQRRGFVVAY------S---SFANENREFVIVGGGNAAGYAARTFV   71 (469)
Q Consensus         3 ~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~------~---~~~~~~~~vvIIGgG~AGl~aA~~L~   71 (469)
                      .++||||.+||++|+++|+..|+|..  .++++..++|......      .   +.....++|+|||||+||+++|..|+
T Consensus        84 ~~~~p~p~~~grvC~~~Ce~~C~~~~~~~~v~I~~l~r~~~~~~~~~~~~~~~~~~~~~~~~V~IIGaG~aGl~aA~~L~  163 (485)
T TIGR01317        84 HATNNFPEFTGRVCPAPCEGACTLGISEDPVGIKSIERIIIDKGFQEGWVQPRPPSKRTGKKVAVVGSGPAGLAAADQLN  163 (485)
T ss_pred             HhhCCchhHHhCcCChhhHHhccCCCCCCCcchhHHHHHHHHHHHHcCCCCCCCCcCCCCCEEEEECCcHHHHHHHHHHH
Confidence            46899999999999999999999986  7899888877654221      1   11234579999999999999999999


Q ss_pred             HcCCCCCcEEEEcCCCCCCCCCCCCcccccCCCCCCCCCCCCCccccCCCCCCCCHhHHHHCCcEEEeCCcEEEEeCCCc
Q 012165           72 EHGMADGRLCIVSKEAYAPYERPALTKGYLFPLDKKPARLPGFHTCVGSGGERQTPEWYKEKGIEMIYQDPVTSIDIEKQ  151 (469)
Q Consensus        72 ~~g~~~~~V~vie~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~v~~id~~~~  151 (469)
                      +.|+   +|+|+|+++.....   +.  +-.+.    .+++.       .......+++++.|++++.++.+. .+... 
T Consensus       164 ~~g~---~V~v~e~~~~~gG~---l~--~gip~----~~~~~-------~~~~~~~~~~~~~Gv~~~~~~~v~-~~~~~-  222 (485)
T TIGR01317       164 RAGH---TVTVFEREDRCGGL---LM--YGIPN----MKLDK-------AIVDRRIDLLSAEGIDFVTNTEIG-VDISA-  222 (485)
T ss_pred             HcCC---eEEEEecCCCCCce---ee--ccCCC----ccCCH-------HHHHHHHHHHHhCCCEEECCCEeC-CccCH-
Confidence            9987   79999998754211   00  00000    01100       001233467788999999986653 22111 


Q ss_pred             EEEeCCCeEEEeccEEeccCCC-CCcCCCCCCCCcCcEEEecCHHHH-HHHH---------HhhhcCCeEEEEcCChHHH
Q 012165          152 TLITNSGKLLKYGSLIVATGCT-ASRFPEKIGGYLPGVHYIRDVADA-DALI---------SSLEKAKKVVVVGGGYIGM  220 (469)
Q Consensus       152 ~v~~~~g~~~~yd~lVlAtG~~-~~~~~~~~g~~~~~v~~~~~~~~~-~~~~---------~~~~~~~~vvVvG~G~~g~  220 (469)
                           ++....||+|++|||+. |+ .+.++|.+.+++++..++... ....         .....+++|+|||+|++|+
T Consensus       223 -----~~~~~~~d~VilAtGa~~~~-~l~i~G~~~~gV~~~~~~l~~~~~~~~~~~~~~~~~~~~~gk~VvViGgG~~g~  296 (485)
T TIGR01317       223 -----DELKEQFDAVVLAGGATKPR-DLPIPGRELKGIHYAMEFLPSATKALLGKDFKDIIFIKAKGKKVVVIGGGDTGA  296 (485)
T ss_pred             -----HHHHhhCCEEEEccCCCCCC-cCCCCCcCCCCcEeHHHHHHHHhhhhccccccccccccCCCCEEEEECCcHHHH
Confidence                 11235799999999998 55 456788888888875432211 1110         1113679999999999999


Q ss_pred             HHHHHHHhCCC-eEeee------------------------HHHHHH-----cCcEE-EcCCeEEEEEeCCCCcEEEEEc
Q 012165          221 EVAAAAVGWKL-DTTRY------------------------EQLYQQ-----NGVKF-VKGASIKNLEAGSDGRVAAVKL  269 (469)
Q Consensus       221 e~A~~l~~~g~-~v~~~------------------------~~~l~~-----~gV~~-~~~~~v~~i~~~~~~~v~~v~~  269 (469)
                      |+|..+.+++. +|+.+                        .+...+     .||.+ +++..+.++..++++++.++.+
T Consensus       297 d~a~~a~~~ga~~V~vv~~~~~~~~~~~~~~~~~~~~~~~e~~~a~~e~~~~~gv~~~~~~~~~~~i~~~~~g~v~~v~~  376 (485)
T TIGR01317       297 DCVGTSLRHGAASVHQFEIMPKPPEARAKDNPWPEWPRVYRVDYAHEEAAAHYGRDPREYSILTKEFIGDDEGKVTALRT  376 (485)
T ss_pred             HHHHHHHHcCCCEEEEEEecCCChhhcccccCCCccchhhhhHHHHHhhhhhcCccceEEecCcEEEEEcCCCeEEEEEE
Confidence            99888777764 56511                        011122     34433 4577788887544466666653


Q ss_pred             --------CCC-----------CEEeCCEEEEccCCc-cCCchhhhcCCccc-CCCEEe-CCCCCCCCCceEEecccccc
Q 012165          270 --------EDG-----------STIDADTIVIGIGAK-PTVSPFERVGLNSS-VGGIQV-DGQFRTRMPGIFAIGDVAAF  327 (469)
Q Consensus       270 --------~~g-----------~~i~~D~vi~a~G~~-p~~~~~~~~gl~~~-~g~i~V-d~~~~t~~~~Vfa~GD~a~~  327 (469)
                              ++|           +++++|.||+++|.. |++.+++..+++.+ +|.+.+ |++++|+.|+|||+|||+..
T Consensus       377 ~~~~~~~~~~Gr~~p~~~~g~~~~i~~D~Vi~AiG~~~p~~~~~~~~gl~~~~~G~i~~~~~~~~Ts~~gVfAaGD~~~g  456 (485)
T TIGR01317       377 VRVEWKKSQDGKWQFVEIPGSEEVFEADLVLLAMGFVGPEQILLDDFGVKKTRRGNISAGYDDYSTSIPGVFAAGDCRRG  456 (485)
T ss_pred             EEEEeccCCCCCccceecCCceEEEECCEEEEccCcCCCccccccccCcccCCCCCEEecCCCceECCCCEEEeeccCCC
Confidence                    133           269999999999996 88888988888865 567754 57899999999999999864


Q ss_pred             CCccCCcccccchHHHHHHHHHHHHHHHhc
Q 012165          328 PLKMYDRTARVEHVDHARQSAQHCIKALLS  357 (469)
Q Consensus       328 ~~~~~~~~~~~~~~~~A~~~a~~~a~~i~~  357 (469)
                      +.          ....|+.+|+.+|.+|..
T Consensus       457 ~~----------~~~~Av~~G~~AA~~i~~  476 (485)
T TIGR01317       457 QS----------LIVWAINEGRKAAAAVDR  476 (485)
T ss_pred             cH----------HHHHHHHHHHHHHHHHHH
Confidence            32          344588889988888753

This model represents one of three built for the NADPH-dependent or NADH-dependent glutamate synthase (EC 1.4.1.13 and 1.4.1.14, respectively) small subunit or homologous region. TIGR01316 describes a family in several archaeal and deeply branched bacterial lineages of a homotetrameric form for which there is no large subunit. Another model describes glutamate synthase small subunit from gamma and some alpha subdivision Proteobacteria plus paralogs of unknown function. This model describes the small subunit, or homologous region of longer forms proteins, of eukaryotes, Gram-positive bacteria, cyanobacteria, and some other lineages. All members with known function participate in NADH or NADPH-dependent reactions to interconvert between glutamine plus 2-oxoglutarate and two molecules of glutamate.

>PRK12809 putative oxidoreductase Fe-S binding subunit; Reviewed

Probab=100.00  E-value=1.1e-34  Score=305.00  Aligned_cols=320  Identities=19%  Similarity=0.216  Sum_probs=227.0

Q ss_pred             cccccccccccccccc--cCCCCcccccc--cCCccccccccccccc---------ccCCCCCCcEEEEcCcHHHHHHHH
Q 012165            2 ASVSNSLSFKHGLSLW--CPQSPSLHRIR--HSSAKNFQRRGFVVAY---------SSFANENREFVIVGGGNAAGYAAR   68 (469)
Q Consensus         2 ~~~~~~~~~~~~~~~~--~~~~~~~~~~~--~~~~~~~~~~~~~~~~---------~~~~~~~~~vvIIGgG~AGl~aA~   68 (469)
                      ..++||||.+|||+||  ++|+.+|.|..  .++++..++|+..+..         .+.....++|+|||||+|||++|.
T Consensus       248 ~~~~np~p~~~grvCp~~~~Ce~~C~~~~~~~~v~i~~l~r~~~d~~~~~~~~~~~~~~~~~~kkVaIIG~GpaGl~aA~  327 (639)
T PRK12809        248 CHQTSSLPEICGRVCPQDRLCEGACTLKDHSGAVSIGNLERYITDTALAMGWRPDVSKVVPRSEKVAVIGAGPAGLGCAD  327 (639)
T ss_pred             HHHhCCcchhhcccCCCCCChHHhccCCCcCCCcChhHHHHHHHHHHHHhCCCCCCCcccCCCCEEEEECcCHHHHHHHH
Confidence            3578999999999999  58999999976  7899999998766431         112235789999999999999999


Q ss_pred             HHHHcCCCCCcEEEEcCCCCCCCCCCCCcccccCCCCCCCCCCCCCccccCCCCCCCCHhHHHHCCcEEEeCCcEEEEeC
Q 012165           69 TFVEHGMADGRLCIVSKEAYAPYERPALTKGYLFPLDKKPARLPGFHTCVGSGGERQTPEWYKEKGIEMIYQDPVTSIDI  148 (469)
Q Consensus        69 ~L~~~g~~~~~V~vie~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~v~~id~  148 (469)
                      .|++.|+   +|+|+|+++.++..   +.  +    .....+++.       .......+++++.|+++++++.+.    
T Consensus       328 ~L~~~G~---~Vtv~e~~~~~GG~---l~--~----gip~~~l~~-------~~~~~~~~~~~~~Gv~~~~~~~v~----  384 (639)
T PRK12809        328 ILARAGV---QVDVFDRHPEIGGM---LT--F----GIPPFKLDK-------TVLSQRREIFTAMGIDFHLNCEIG----  384 (639)
T ss_pred             HHHHcCC---cEEEEeCCCCCCCe---ee--c----cCCcccCCH-------HHHHHHHHHHHHCCeEEEcCCccC----
Confidence            9999998   79999998764311   00  0    001111110       001223467788999999987652    


Q ss_pred             CCcEEEeCCCeEEEeccEEeccCCCCCcCCCCCCCCcCcEEEecCHHHH--HHHHH---------hhhcCCeEEEEcCCh
Q 012165          149 EKQTLITNSGKLLKYGSLIVATGCTASRFPEKIGGYLPGVHYIRDVADA--DALIS---------SLEKAKKVVVVGGGY  217 (469)
Q Consensus       149 ~~~~v~~~~g~~~~yd~lVlAtG~~~~~~~~~~g~~~~~v~~~~~~~~~--~~~~~---------~~~~~~~vvVvG~G~  217 (469)
                        +.+.+.+ ....||+|++|||+.+...+.+++.+.+|+++..++...  ..+..         ....+++++|+|+|.
T Consensus       385 --~~~~~~~-l~~~~DaV~latGa~~~~~~~i~g~~~~gv~~a~~~l~~~~~~~~~~~~~~~~~~~~~~gk~vvViGgG~  461 (639)
T PRK12809        385 --RDITFSD-LTSEYDAVFIGVGTYGMMRADLPHEDAPGVIQALPFLTAHTRQLMGLPESEEYPLTDVEGKRVVVLGGGD  461 (639)
T ss_pred             --CcCCHHH-HHhcCCEEEEeCCCCCCCCCCCCCCccCCcEeHHHHHHHHHHhhccCccccccccccCCCCeEEEECCcH
Confidence              1122222 124799999999998654456778777887763222111  01100         112578999999999


Q ss_pred             HHHHHHHHHHhCCC-eEe--------------eeHHHHHHcCcEEEcCCeEEEEEeCCCCcEEEEEc---C------CC-
Q 012165          218 IGMEVAAAAVGWKL-DTT--------------RYEQLYQQNGVKFVKGASIKNLEAGSDGRVAAVKL---E------DG-  272 (469)
Q Consensus       218 ~g~e~A~~l~~~g~-~v~--------------~~~~~l~~~gV~~~~~~~v~~i~~~~~~~v~~v~~---~------~g-  272 (469)
                      +++++|..+.++|. +|+              .....+++.||++++++.++++..++++++.++.+   .      +| 
T Consensus       462 ~a~d~a~~~~~~Ga~~Vt~v~rr~~~~~~~~~~e~~~a~~eGv~~~~~~~~~~i~~~~~g~v~~v~~~~~~~~~~~~~g~  541 (639)
T PRK12809        462 TTMDCLRTSIRLNAASVTCAYRRDEVSMPGSRKEVVNAREEGVEFQFNVQPQYIACDEDGRLTAVGLIRTAMGEPGPDGR  541 (639)
T ss_pred             HHHHHHHHHHHcCCCeEEEeeecCcccCCCCHHHHHHHHHcCCeEEeccCCEEEEECCCCeEEEEEEEEEEecCcCCCCC
Confidence            99999999888885 566              11123467899999999999997655676665533   1      12 


Q ss_pred             ----------CEEeCCEEEEccCCccCC-chhhhcCCccc-CCCEEeCC----CCCCCCCceEEeccccccCCccCCccc
Q 012165          273 ----------STIDADTIVIGIGAKPTV-SPFERVGLNSS-VGGIQVDG----QFRTRMPGIFAIGDVAAFPLKMYDRTA  336 (469)
Q Consensus       273 ----------~~i~~D~vi~a~G~~p~~-~~~~~~gl~~~-~g~i~Vd~----~~~t~~~~Vfa~GD~a~~~~~~~~~~~  336 (469)
                                .++++|.||+|+|+.|+. .++++.+++.+ +|.|.||+    +++|+.|+|||+||++..+.       
T Consensus       542 ~~~~~~~g~~~~i~aD~Vi~AiG~~p~~~~~~~~~gl~~~~~G~i~vd~~~~~~~~Ts~~gVfA~GD~~~g~~-------  614 (639)
T PRK12809        542 RRPRPVAGSEFELPADVLIMAFGFQAHAMPWLQGSGIKLDKWGLIQTGDVGYLPTQTHLKKVFAGGDAVHGAD-------  614 (639)
T ss_pred             ccceecCCceEEEECCEEEECcCCCCCccccccccCcccCCCCCEEeCCCcccCcccCCCCEEEcCCCCCCch-------
Confidence                      368999999999999974 56777888776 57788885    48999999999999987533       


Q ss_pred             ccchHHHHHHHHHHHHHHHhc
Q 012165          337 RVEHVDHARQSAQHCIKALLS  357 (469)
Q Consensus       337 ~~~~~~~A~~~a~~~a~~i~~  357 (469)
                         .+..|+.+|+.+|.+|..
T Consensus       615 ---~vv~Ai~~Gr~AA~~i~~  632 (639)
T PRK12809        615 ---LVVTAMAAGRQAARDMLT  632 (639)
T ss_pred             ---HHHHHHHHHHHHHHHHHH
Confidence               455699999999988864

>TIGR01292 TRX_reduct thioredoxin-disulfide reductase

Probab=100.00  E-value=2.8e-33  Score=270.08  Aligned_cols=272  Identities=25%  Similarity=0.329  Sum_probs=197.9

Q ss_pred             CcEEEEcCcHHHHHHHHHHHHcCCCCCcEEEEcCCCCCCCCCCCCcccccCCCCCCCCCCCCCcc-ccCCCCCCCCHhHH
Q 012165           52 REFVIVGGGNAAGYAARTFVEHGMADGRLCIVSKEAYAPYERPALTKGYLFPLDKKPARLPGFHT-CVGSGGERQTPEWY  130 (469)
Q Consensus        52 ~~vvIIGgG~AGl~aA~~L~~~g~~~~~V~vie~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~  130 (469)
                      +||+|||||+||++||..|++.|+   +|+|+|+++... .       +...  ....++|++.. ..+........+++
T Consensus         1 ~dvvIIG~G~aGl~aA~~l~~~g~---~v~lie~~~~gg-~-------~~~~--~~~~~~~~~~~~~~~~~~~~~l~~~~   67 (300)
T TIGR01292         1 YDVIIIGAGPAGLTAAIYAARANL---KTLIIEGMEPGG-Q-------LTTT--TEVENYPGFPEGISGPELMEKMKEQA   67 (300)
T ss_pred             CcEEEECCCHHHHHHHHHHHHCCC---CEEEEeccCCCc-c-------eeec--ccccccCCCCCCCChHHHHHHHHHHH
Confidence            589999999999999999999987   799999876211 0       0000  00111121110 00011123345567


Q ss_pred             HHCCcEEEeCCcEEEEeCCCc--EEEeCCCeEEEeccEEeccCCCCCcCCCCCCCCc---CcEEEecCHHHHHHHHHhhh
Q 012165          131 KEKGIEMIYQDPVTSIDIEKQ--TLITNSGKLLKYGSLIVATGCTASRFPEKIGGYL---PGVHYIRDVADADALISSLE  205 (469)
Q Consensus       131 ~~~~i~~~~~~~v~~id~~~~--~v~~~~g~~~~yd~lVlAtG~~~~~~~~~~g~~~---~~v~~~~~~~~~~~~~~~~~  205 (469)
                      ++.+++++. ++|+.+++.+.  .+.+.++.++.||+||+|||+.|. .|.+||...   .++++.....      ....
T Consensus        68 ~~~gv~~~~-~~v~~v~~~~~~~~v~~~~~~~~~~d~liiAtG~~~~-~~~i~g~~~~~~~~~~~~~~~~------~~~~  139 (300)
T TIGR01292        68 VKFGAEIIY-EEVIKVDLSDRPFKVKTGDGKEYTAKAVIIATGASAR-KLGIPGEDEFLGRGVSYCATCD------GPFF  139 (300)
T ss_pred             HHcCCeEEE-EEEEEEEecCCeeEEEeCCCCEEEeCEEEECCCCCcc-cCCCCChhhcCCccEEEeeecC------hhhc
Confidence            788999988 79999998765  566777788999999999999886 455565321   2333322111      1234


Q ss_pred             cCCeEEEEcCChHHHHHHHHHHhCCCeEe------------eeHHHHHHc-CcEEEcCCeEEEEEeCCCCcEEEEEcC--
Q 012165          206 KAKKVVVVGGGYIGMEVAAAAVGWKLDTT------------RYEQLYQQN-GVKFVKGASIKNLEAGSDGRVAAVKLE--  270 (469)
Q Consensus       206 ~~~~vvVvG~G~~g~e~A~~l~~~g~~v~------------~~~~~l~~~-gV~~~~~~~v~~i~~~~~~~v~~v~~~--  270 (469)
                      .+++++|||+|.+|+|+|..|.+.+.+++            .+.+.+++. ||++++++.+++++.+  +.+..+++.  
T Consensus       140 ~~~~v~ViG~G~~~~e~a~~l~~~~~~V~~v~~~~~~~~~~~~~~~l~~~~gv~~~~~~~v~~i~~~--~~~~~v~~~~~  217 (300)
T TIGR01292       140 KNKEVAVVGGGDSAIEEALYLTRIAKKVTLVHRRDKFRAEKILLDRLRKNPNIEFLWNSTVKEIVGD--NKVEGVKIKNT  217 (300)
T ss_pred             CCCEEEEECCChHHHHHHHHHHhhcCEEEEEEeCcccCcCHHHHHHHHhCCCeEEEeccEEEEEEcc--CcEEEEEEEec
Confidence            67899999999999999999999988887            235667777 9999999999999843  344445442  


Q ss_pred             -CC--CEEeCCEEEEccCCccCCchhhhcCCccc-CCCEEeCCCCCCCCCceEEeccccccCCccCCcccccchHHHHHH
Q 012165          271 -DG--STIDADTIVIGIGAKPTVSPFERVGLNSS-VGGIQVDGQFRTRMPGIFAIGDVAAFPLKMYDRTARVEHVDHARQ  346 (469)
Q Consensus       271 -~g--~~i~~D~vi~a~G~~p~~~~~~~~gl~~~-~g~i~Vd~~~~t~~~~Vfa~GD~a~~~~~~~~~~~~~~~~~~A~~  346 (469)
                       +|  +++++|.+|+++|++|+.++++.+ +..+ +|++.||++++|++||||++|||+...         ...+..|+.
T Consensus       218 ~~g~~~~i~~D~vi~a~G~~~~~~~l~~~-~~~~~~g~i~v~~~~~t~~~~vya~GD~~~~~---------~~~~~~A~~  287 (300)
T TIGR01292       218 VTGEEEELKVDGVFIAIGHEPNTELLKGL-LELDEGGYIVTDEGMRTSVPGVFAAGDVRDKG---------YRQAVTAAG  287 (300)
T ss_pred             CCCceEEEEccEEEEeeCCCCChHHHHHh-heecCCCcEEECCCCccCCCCEEEeecccCcc---------hhhhhhhhh
Confidence             23  579999999999999999888876 5544 578999999999999999999999742         125667999


Q ss_pred             HHHHHHHHHh
Q 012165          347 SAQHCIKALL  356 (469)
Q Consensus       347 ~a~~~a~~i~  356 (469)
                      +|+.+|.+|.
T Consensus       288 ~g~~aa~~i~  297 (300)
T TIGR01292       288 DGCIAALSAE  297 (300)
T ss_pred             hHHHHHHHHH
Confidence            9999999986

This model describes thioredoxin-disulfide reductase, a member of the pyridine nucleotide-disulphide oxidoreductases (PFAM:PF00070).

>PRK12771 putative glutamate synthase (NADPH) small subunit; Provisional

Probab=100.00  E-value=1.1e-33  Score=294.49  Aligned_cols=318  Identities=23%  Similarity=0.242  Sum_probs=217.7

Q ss_pred             cccccccccccccccccCCCCcccccc--cCCcccccccccccc------cc--cCCCCCCcEEEEcCcHHHHHHHHHHH
Q 012165            2 ASVSNSLSFKHGLSLWCPQSPSLHRIR--HSSAKNFQRRGFVVA------YS--SFANENREFVIVGGGNAAGYAARTFV   71 (469)
Q Consensus         2 ~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~------~~--~~~~~~~~vvIIGgG~AGl~aA~~L~   71 (469)
                      ..++||||.+|||+|+++|+..|.|..  .+++++++.|...+.      ..  +.....++|+|||+||+||++|..|+
T Consensus        78 ~~~~np~~~~~grvc~~~ce~~C~r~~~~~~v~i~~l~r~~~~~~~~~~~~~~~~~~~~g~~V~VIGaGpaGL~aA~~l~  157 (564)
T PRK12771         78 LTKDNPFPAVMGRVCYHPCESGCNRGQVDDAVGINAVERFLGDYAIANGWKFPAPAPDTGKRVAVIGGGPAGLSAAYHLR  157 (564)
T ss_pred             HHHhCCcchHhhCcCCchhHHhccCCCCCCCcCHHHHHHHHHHHHHHcCCCCCCCCCCCCCEEEEECCCHHHHHHHHHHH
Confidence            357899999999999999999999987  788888888864221      11  12345689999999999999999999


Q ss_pred             HcCCCCCcEEEEcCCCCCCCCCCCCcccccCCCCCCCCCCCCCccccCCCCCCCCHhHHHHCCcEEEeCCcE-EEEeCCC
Q 012165           72 EHGMADGRLCIVSKEAYAPYERPALTKGYLFPLDKKPARLPGFHTCVGSGGERQTPEWYKEKGIEMIYQDPV-TSIDIEK  150 (469)
Q Consensus        72 ~~g~~~~~V~vie~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~v-~~id~~~  150 (469)
                      +.|+   +|+++|+.+..+..   +.  +..+    ..+++.       +......+++.+.|+++..++.+ ..+..+.
T Consensus       158 ~~G~---~V~v~e~~~~~GG~---l~--~gip----~~~~~~-------~~~~~~l~~~~~~Gv~~~~~~~~~~~~~~~~  218 (564)
T PRK12771        158 RMGH---AVTIFEAGPKLGGM---MR--YGIP----AYRLPR-------EVLDAEIQRILDLGVEVRLGVRVGEDITLEQ  218 (564)
T ss_pred             HCCC---eEEEEecCCCCCCe---ee--ecCC----CccCCH-------HHHHHHHHHHHHCCCEEEeCCEECCcCCHHH
Confidence            9987   79999998765321   00  0011    111110       00112335667889998887554 2221111


Q ss_pred             cEEEeCCCeEEEeccEEeccCCCCCcCCCCCCCCcCcEEEecCHHHHHHHHHhhhcCCeEEEEcCChHHHHHHHHHHhCC
Q 012165          151 QTLITNSGKLLKYGSLIVATGCTASRFPEKIGGYLPGVHYIRDVADADALISSLEKAKKVVVVGGGYIGMEVAAAAVGWK  230 (469)
Q Consensus       151 ~~v~~~~g~~~~yd~lVlAtG~~~~~~~~~~g~~~~~v~~~~~~~~~~~~~~~~~~~~~vvVvG~G~~g~e~A~~l~~~g  230 (469)
                              ....||++++|||+.......+++....++.....+............+++++|+|+|.++++.+..+.+++
T Consensus       219 --------~~~~~D~Vi~AtG~~~~~~~~i~g~~~~gv~~~~~~l~~~~~~~~~~~gk~v~ViGgg~~a~d~a~~a~~lg  290 (564)
T PRK12771        219 --------LEGEFDAVFVAIGAQLGKRLPIPGEDAAGVLDAVDFLRAVGEGEPPFLGKRVVVIGGGNTAMDAARTARRLG  290 (564)
T ss_pred             --------HHhhCCEEEEeeCCCCCCcCCCCCCccCCcEEHHHHHHHhhccCCcCCCCCEEEECChHHHHHHHHHHHHcC
Confidence                    113589999999987543344556555565443222111110111234789999999999999999888887


Q ss_pred             -CeEe--------------eeHHHHHHcCcEEEcCCeEEEEEeCCCCcE----EEEEc----CCC---------CEEeCC
Q 012165          231 -LDTT--------------RYEQLYQQNGVKFVKGASIKNLEAGSDGRV----AAVKL----EDG---------STIDAD  278 (469)
Q Consensus       231 -~~v~--------------~~~~~l~~~gV~~~~~~~v~~i~~~~~~~v----~~v~~----~~g---------~~i~~D  278 (469)
                       .+++              ...+...+.||+++++..+.++..++++.+    ..+.+    ++|         +++++|
T Consensus       291 a~~v~ii~r~~~~~~~~~~~~~~~a~~~GVki~~~~~~~~i~~~~~~~~~v~~~~~~~~~~~~~g~~~~~~g~~~~i~~D  370 (564)
T PRK12771        291 AEEVTIVYRRTREDMPAHDEEIEEALREGVEINWLRTPVEIEGDENGATGLRVITVEKMELDEDGRPSPVTGEEETLEAD  370 (564)
T ss_pred             CCEEEEEEecCcccCCCCHHHHHHHHHcCCEEEecCCcEEEEcCCCCEEEEEEEEEEecccCCCCCeeecCCceEEEECC
Confidence             3343              112234568999999999999975444432    12221    222         379999


Q ss_pred             EEEEccCCccCCchhhh-cCCcccCCCEEeCC-CCCCCCCceEEeccccccCCccCCcccccchHHHHHHHHHHHHHHHh
Q 012165          279 TIVIGIGAKPTVSPFER-VGLNSSVGGIQVDG-QFRTRMPGIFAIGDVAAFPLKMYDRTARVEHVDHARQSAQHCIKALL  356 (469)
Q Consensus       279 ~vi~a~G~~p~~~~~~~-~gl~~~~g~i~Vd~-~~~t~~~~Vfa~GD~a~~~~~~~~~~~~~~~~~~A~~~a~~~a~~i~  356 (469)
                      .||+|+|..|++.++++ .++..++|+|.||+ +++|++|+|||+|||+..+.          .+..|+.+|+.+|.+|.
T Consensus       371 ~Vi~A~G~~p~~~~~~~~~gl~~~~G~i~vd~~~~~ts~~~Vfa~GD~~~g~~----------~v~~Av~~G~~aA~~i~  440 (564)
T PRK12771        371 LVVLAIGQDIDSAGLESVPGVEVGRGVVQVDPNFMMTGRPGVFAGGDMVPGPR----------TVTTAIGHGKKAARNID  440 (564)
T ss_pred             EEEECcCCCCchhhhhhccCcccCCCCEEeCCCCccCCCCCEEeccCcCCCch----------HHHHHHHHHHHHHHHHH
Confidence            99999999999888875 56764568899998 78899999999999987432          45678888888888873

>TIGR03140 AhpF alkyl hydroperoxide reductase, F subunit

Probab=100.00  E-value=5.6e-33  Score=285.75  Aligned_cols=275  Identities=25%  Similarity=0.347  Sum_probs=195.8

Q ss_pred             CCCCcEEEEcCcHHHHHHHHHHHHcCCCCCcEEEEcCCCCC-CCCCCCCcccccCCCCCCCCCCCCCccccCCCCCCCCH
Q 012165           49 NENREFVIVGGGNAAGYAARTFVEHGMADGRLCIVSKEAYA-PYERPALTKGYLFPLDKKPARLPGFHTCVGSGGERQTP  127 (469)
Q Consensus        49 ~~~~~vvIIGgG~AGl~aA~~L~~~g~~~~~V~vie~~~~~-~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  127 (469)
                      ...+||+||||||||++||.+|++.|+   +++|+++.... .+....+.            ++.++....+........
T Consensus       210 ~~~~dVvIIGgGpAGl~AA~~la~~G~---~v~li~~~~GG~~~~~~~~~------------~~~~~~~~~~~~l~~~l~  274 (515)
T TIGR03140       210 LDPYDVLVVGGGPAGAAAAIYAARKGL---RTAMVAERIGGQVKDTVGIE------------NLISVPYTTGSQLAANLE  274 (515)
T ss_pred             cCCCCEEEECCCHHHHHHHHHHHHCCC---cEEEEecCCCCccccCcCcc------------cccccCCCCHHHHHHHHH
Confidence            456999999999999999999999987   79999753110 01111110            111110001111122345


Q ss_pred             hHHHHCCcEEEeCCcEEEEeCCC--cEEEeCCCeEEEeccEEeccCCCCCcCCCCCCCC---cCcEEEecCHHHHHHHHH
Q 012165          128 EWYKEKGIEMIYQDPVTSIDIEK--QTLITNSGKLLKYGSLIVATGCTASRFPEKIGGY---LPGVHYIRDVADADALIS  202 (469)
Q Consensus       128 ~~~~~~~i~~~~~~~v~~id~~~--~~v~~~~g~~~~yd~lVlAtG~~~~~~~~~~g~~---~~~v~~~~~~~~~~~~~~  202 (469)
                      +++++++++++.+++|..++.+.  ..+++.+|..+.||+||+|||+.++ .|.++|..   .+++++.....      .
T Consensus       275 ~~l~~~gv~i~~~~~V~~I~~~~~~~~v~~~~g~~i~~d~lIlAtGa~~~-~~~ipG~~~~~~~~v~~~~~~~------~  347 (515)
T TIGR03140       275 EHIKQYPIDLMENQRAKKIETEDGLIVVTLESGEVLKAKSVIVATGARWR-KLGVPGEKEYIGKGVAYCPHCD------G  347 (515)
T ss_pred             HHHHHhCCeEEcCCEEEEEEecCCeEEEEECCCCEEEeCEEEECCCCCcC-CCCCCCHHHcCCCeEEEeeccC------h
Confidence            66777899999988999998765  4677778888999999999999986 45556632   23444432211      1


Q ss_pred             hhhcCCeEEEEcCChHHHHHHHHHHhCCCeEe------------eeHHHHHH-cCcEEEcCCeEEEEEeCCCCcEEEEEc
Q 012165          203 SLEKAKKVVVVGGGYIGMEVAAAAVGWKLDTT------------RYEQLYQQ-NGVKFVKGASIKNLEAGSDGRVAAVKL  269 (469)
Q Consensus       203 ~~~~~~~vvVvG~G~~g~e~A~~l~~~g~~v~------------~~~~~l~~-~gV~~~~~~~v~~i~~~~~~~v~~v~~  269 (469)
                      ....+++++|||+|++|+|+|..|++++.+|+            .+.+.+++ .||++++++.+++++.+ ++.+..|.+
T Consensus       348 ~~~~~k~VvViGgG~~g~E~A~~L~~~g~~Vtli~~~~~l~~~~~l~~~l~~~~gV~i~~~~~v~~i~~~-~~~v~~v~~  426 (515)
T TIGR03140       348 PFFKGKDVAVIGGGNSGIEAAIDLAGIVRHVTVLEFADELKADKVLQDKLKSLPNVDILTSAQTTEIVGD-GDKVTGIRY  426 (515)
T ss_pred             hhcCCCEEEEECCcHHHHHHHHHHHhcCcEEEEEEeCCcCChhHHHHHHHhcCCCCEEEECCeeEEEEcC-CCEEEEEEE
Confidence            23468999999999999999999999999887            22445555 69999999999999743 456656766


Q ss_pred             CCC-----CEEeCCEEEEccCCccCCchhhhcCCccc-CCCEEeCCCCCCCCCceEEeccccccCCccCCcccccchHHH
Q 012165          270 EDG-----STIDADTIVIGIGAKPTVSPFERVGLNSS-VGGIQVDGQFRTRMPGIFAIGDVAAFPLKMYDRTARVEHVDH  343 (469)
Q Consensus       270 ~~g-----~~i~~D~vi~a~G~~p~~~~~~~~gl~~~-~g~i~Vd~~~~t~~~~Vfa~GD~a~~~~~~~~~~~~~~~~~~  343 (469)
                      .++     +++++|.|++++|.+||+++++.. ++.+ +|+|.||+++||++|+|||+|||+..+...         +..
T Consensus       427 ~~~~~~~~~~i~~D~vi~a~G~~Pn~~~l~~~-~~~~~~G~I~vd~~~~Ts~p~IyAaGDv~~~~~~~---------~~~  496 (515)
T TIGR03140       427 QDRNSGEEKQLDLDGVFVQIGLVPNTEWLKDA-VELNRRGEIVIDERGRTSVPGIFAAGDVTTVPYKQ---------III  496 (515)
T ss_pred             EECCCCcEEEEEcCEEEEEeCCcCCchHHhhh-cccCCCCeEEECCCCCCCCCCEEEcccccCCccce---------EEE
Confidence            542     469999999999999999998776 6654 578999999999999999999999865421         112


Q ss_pred             HHHHHHHHHHHHh
Q 012165          344 ARQSAQHCIKALL  356 (469)
Q Consensus       344 A~~~a~~~a~~i~  356 (469)
                      |+.+|..+|.++.
T Consensus       497 A~~~G~~Aa~~i~  509 (515)
T TIGR03140       497 AMGEGAKAALSAF  509 (515)
T ss_pred             EEccHHHHHHHHH
Confidence            5556666665554

This enzyme is the partner of the peroxiredoxin (alkyl hydroperoxide reductase) AhpC which contains the peroxide-reactive cysteine. AhpF contains the reductant (NAD(P)H) binding domain (pfam00070) and presumably acts to resolve the disulfide which forms after oxidation of the active site cysteine in AphC. This proteins contains two paired conserved cysteine motifs, CxxCP and CxHCDGP.

>KOG0405 consensus Pyridine nucleotide-disulphide oxidoreductase [Secondary metabolites biosynthesis, transport and catabolism]

Probab=100.00  E-value=5.1e-32  Score=247.15  Aligned_cols=357  Identities=22%  Similarity=0.292  Sum_probs=239.6

Q ss_pred             CCCCcEEEEcCcHHHHHHHHHHHHcCCCCCcEEEEcCCCCCCCC---CCCCcccccCCC-------------CCCCCCCC
Q 012165           49 NENREFVIVGGGNAAGYAARTFVEHGMADGRLCIVSKEAYAPYE---RPALTKGYLFPL-------------DKKPARLP  112 (469)
Q Consensus        49 ~~~~~vvIIGgG~AGl~aA~~L~~~g~~~~~V~vie~~~~~~~~---~~~l~~~~~~~~-------------~~~~~~~~  112 (469)
                      ...+|++|||||..|+++|+..+++|.   ++.|+|..-..+..   +-..++..++..             .......+
T Consensus        18 ~k~fDylvIGgGSGGvasARrAa~~GA---kv~l~E~~f~lGGTCVn~GCVPKKvm~~~a~~~~~~~da~~yG~~~~~~~   94 (478)
T KOG0405|consen   18 VKDFDYLVIGGGSGGVASARRAASHGA---KVALCELPFGLGGTCVNVGCVPKKVMWYAADYSEEMEDAKDYGFPINEEG   94 (478)
T ss_pred             ccccceEEEcCCcchhHHhHHHHhcCc---eEEEEecCCCcCceEEeeccccceeEEehhhhhHHhhhhhhcCCcccccc
Confidence            347999999999999999999999986   79999876322110   111111111000             00000111


Q ss_pred             CCccccC----CCCCCCC----HhHHHHCCcEEEeCCcEEEEeCCCcEEEeCCCe--EEEeccEEeccCCCCCcCCCCCC
Q 012165          113 GFHTCVG----SGGERQT----PEWYKEKGIEMIYQDPVTSIDIEKQTLITNSGK--LLKYGSLIVATGCTASRFPEKIG  182 (469)
Q Consensus       113 ~~~~~~~----~~~~~~~----~~~~~~~~i~~~~~~~v~~id~~~~~v~~~~g~--~~~yd~lVlAtG~~~~~~~~~~g  182 (469)
                      .|.....    .....++    ...+.+.+++++.| +..-+++..-+|...++.  .+++.+++||||++|. +|.+||
T Consensus        95 ~fdW~~ik~krdayi~RLngIY~~~L~k~~V~~i~G-~a~f~~~~~v~V~~~d~~~~~Ytak~iLIAtGg~p~-~PnIpG  172 (478)
T KOG0405|consen   95 SFDWKVIKQKRDAYILRLNGIYKRNLAKAAVKLIEG-RARFVSPGEVEVEVNDGTKIVYTAKHILIATGGRPI-IPNIPG  172 (478)
T ss_pred             CCcHHHHHhhhhHHHHHHHHHHHhhccccceeEEee-eEEEcCCCceEEEecCCeeEEEecceEEEEeCCccC-CCCCCc
Confidence            1110000    0000011    11223447788876 666677777788888885  3788999999999997 677766


Q ss_pred             CCcCcEEEecCHHHHHHHHHhhhcCCeEEEEcCChHHHHHHHHHHhCCCeEe------------------eeHHHHHHcC
Q 012165          183 GYLPGVHYIRDVADADALISSLEKAKKVVVVGGGYIGMEVAAAAVGWKLDTT------------------RYEQLYQQNG  244 (469)
Q Consensus       183 ~~~~~v~~~~~~~~~~~~~~~~~~~~~vvVvG~G~~g~e~A~~l~~~g~~v~------------------~~~~~l~~~g  244 (469)
                      ..+.        .|++.+.+....+++++|+|+|++++|+|..++.+|.++.                  .+.+.++..|
T Consensus       173 ~E~g--------idSDgff~Lee~Pkr~vvvGaGYIavE~Agi~~gLgsethlfiR~~kvLR~FD~~i~~~v~~~~~~~g  244 (478)
T KOG0405|consen  173 AELG--------IDSDGFFDLEEQPKRVVVVGAGYIAVEFAGIFAGLGSETHLFIRQEKVLRGFDEMISDLVTEHLEGRG  244 (478)
T ss_pred             hhhc--------cccccccchhhcCceEEEEccceEEEEhhhHHhhcCCeeEEEEecchhhcchhHHHHHHHHHHhhhcc
Confidence            5321        1344555555689999999999999999999999999887                  4567788999


Q ss_pred             cEEEcCCeEEEEEeCCCCcEEEEEcCCCCEEeCCEEEEccCCccCCch--hhhcCCccc-CCCEEeCCCCCCCCCceEEe
Q 012165          245 VKFVKGASIKNLEAGSDGRVAAVKLEDGSTIDADTIVIGIGAKPTVSP--FERVGLNSS-VGGIQVDGQFRTRMPGIFAI  321 (469)
Q Consensus       245 V~~~~~~~v~~i~~~~~~~v~~v~~~~g~~i~~D~vi~a~G~~p~~~~--~~~~gl~~~-~g~i~Vd~~~~t~~~~Vfa~  321 (469)
                      |++|.++.++++.+..++.. .+..+.|+...+|.++||+|+.||+.-  |++.|++.+ .|.|.||++.+||+|+||++
T Consensus       245 invh~~s~~~~v~K~~~g~~-~~i~~~~~i~~vd~llwAiGR~Pntk~L~le~vGVk~~~~g~IivDeYq~Tnvp~I~av  323 (478)
T KOG0405|consen  245 INVHKNSSVTKVIKTDDGLE-LVITSHGTIEDVDTLLWAIGRKPNTKGLNLENVGVKTDKNGAIIVDEYQNTNVPSIWAV  323 (478)
T ss_pred             eeecccccceeeeecCCCce-EEEEeccccccccEEEEEecCCCCcccccchhcceeeCCCCCEEEeccccCCCCceEEe
Confidence            99999999999998766654 345566666679999999999999864  788899887 67799999999999999999


Q ss_pred             ccccccCCccCCcccccchHHHHHHHHHHHHHHHhcCCC---CCCCCCCceeeecccccCCCcceeeEEeecCCCc----
Q 012165          322 GDVAAFPLKMYDRTARVEHVDHARQSAQHCIKALLSAQT---HTYDYLPYFYSRVFEYEGSPRKVWWQFFGDNVGE----  394 (469)
Q Consensus       322 GD~a~~~~~~~~~~~~~~~~~~A~~~a~~~a~~i~~~~~---~~~~~~p~~~~~~~~~~g~~~~~~~~~~G~~~~~----  394 (469)
                      ||++.-          +..-+.|..+|+.++..+.++..   ..|..+|   +.+|.++.      +-.+|.++.+    
T Consensus       324 GDv~gk----------~~LTPVAiaagr~la~rlF~~~~~~kldY~nVp---~vVFshP~------igtVGLtE~EAiek  384 (478)
T KOG0405|consen  324 GDVTGK----------INLTPVAIAAGRKLANRLFGGGKDTKLDYENVP---CVVFSHPP------IGTVGLTEEEAIEK  384 (478)
T ss_pred             ccccCc----------EecchHHHhhhhhHHHHhhcCCCCCccccccCc---eEEEecCC------cccccCCHHHHHHH
Confidence            999974          23445599999999999997432   3567777   46676654      2234443321    


Q ss_pred             -----E-EEEccC-----------CCcEEEEEE--eCCEEEEEEeecCChHHhHHH-HHHHhCC
Q 012165          395 -----T-IEIGNF-----------DPKIATFWI--DSGKLKGVLVESGSPEEFQLL-PTLARSQ  438 (469)
Q Consensus       395 -----~-~~~~~~-----------~~~~~~~~~--~~~~l~g~~~~~~~~~~~~~~-~~~~~~~  438 (469)
                           + +....|           +..+.++..  ++++++|+++++.++.++.+- .-.++.+
T Consensus       385 yg~~~i~vy~s~F~pm~~a~~~~k~kt~mKlvc~~~~eKVvG~hm~G~~s~EilQGf~VAvKmG  448 (478)
T KOG0405|consen  385 YGKGDIKVYTSKFNPMKYAMSGRKEKTLMKLVCAGKSEKVVGVHMCGDDSAEILQGFAVAVKMG  448 (478)
T ss_pred             hCccceEEEecCCchhHhHhhcCCcceEEEEEEecCCCcEEEEEEecCCcHHHHhhhhhheecC
Confidence                 1 111111           122344444  579999999987777665442 3334444

>PRK10262 thioredoxin reductase; Provisional

Probab=100.00  E-value=5.6e-32  Score=263.21  Aligned_cols=257  Identities=21%  Similarity=0.291  Sum_probs=177.8

Q ss_pred             CCCCcEEEEcCcHHHHHHHHHHHHcCCCCCcEEEEcCCCCCCCCCCCCcccccCCCCCCCCCCCCCcc-ccCCCCCCCCH
Q 012165           49 NENREFVIVGGGNAAGYAARTFVEHGMADGRLCIVSKEAYAPYERPALTKGYLFPLDKKPARLPGFHT-CVGSGGERQTP  127 (469)
Q Consensus        49 ~~~~~vvIIGgG~AGl~aA~~L~~~g~~~~~V~vie~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~  127 (469)
                      ...+||+||||||||++||..|+++|+   +++++|.....+... ...         ...++|+... ..+.....+..
T Consensus         4 ~~~~~vvIIGgGpaGl~aA~~l~~~g~---~~~~ie~~~~gg~~~-~~~---------~~~~~~~~~~~~~~~~~~~~~~   70 (321)
T PRK10262          4 TKHSKLLILGSGPAGYTAAVYAARANL---QPVLITGMEKGGQLT-TTT---------EVENWPGDPNDLTGPLLMERMH   70 (321)
T ss_pred             CCcCCEEEECCCHHHHHHHHHHHHCCC---CeEEEEeecCCCcee-cCc---------eECCCCCCCCCCCHHHHHHHHH
Confidence            456899999999999999999999987   688988543211110 000         0111111100 00000012234


Q ss_pred             hHHHHCCcEEEeCCcEEEEeCCCcEEEeC-CCeEEEeccEEeccCCCCCcCCCCCCCC---cCcEEEecCHHHHHHHHHh
Q 012165          128 EWYKEKGIEMIYQDPVTSIDIEKQTLITN-SGKLLKYGSLIVATGCTASRFPEKIGGY---LPGVHYIRDVADADALISS  203 (469)
Q Consensus       128 ~~~~~~~i~~~~~~~v~~id~~~~~v~~~-~g~~~~yd~lVlAtG~~~~~~~~~~g~~---~~~v~~~~~~~~~~~~~~~  203 (469)
                      +....++++++.+ +|..++...+.+++. +...+.||+||||||+.|+ .|++||.+   ..++++....      ...
T Consensus        71 ~~~~~~~~~~~~~-~v~~v~~~~~~~~v~~~~~~~~~d~vilAtG~~~~-~~~i~g~~~~~~~~v~~~~~~------~~~  142 (321)
T PRK10262         71 EHATKFETEIIFD-HINKVDLQNRPFRLTGDSGEYTCDALIIATGASAR-YLGLPSEEAFKGRGVSACATC------DGF  142 (321)
T ss_pred             HHHHHCCCEEEee-EEEEEEecCCeEEEEecCCEEEECEEEECCCCCCC-CCCCCCHHHcCCCcEEEeecC------CHH
Confidence            4455667777774 677888766654332 2336899999999999986 45566632   2334433221      122


Q ss_pred             hhcCCeEEEEcCChHHHHHHHHHHhCCCeEe----------------eeHHHHHHcCcEEEcCCeEEEEEeCCCCcEEEE
Q 012165          204 LEKAKKVVVVGGGYIGMEVAAAAVGWKLDTT----------------RYEQLYQQNGVKFVKGASIKNLEAGSDGRVAAV  267 (469)
Q Consensus       204 ~~~~~~vvVvG~G~~g~e~A~~l~~~g~~v~----------------~~~~~l~~~gV~~~~~~~v~~i~~~~~~~v~~v  267 (469)
                      ...+++++|||+|.+|+|+|..|++++.+++                .+.+.+++.||++++++.+++++.+ ++.+..+
T Consensus       143 ~~~g~~vvVvGgG~~g~e~A~~l~~~~~~Vtlv~~~~~~~~~~~~~~~~~~~l~~~gV~i~~~~~v~~v~~~-~~~~~~v  221 (321)
T PRK10262        143 FYRNQKVAVIGGGNTAVEEALYLSNIASEVHLIHRRDGFRAEKILIKRLMDKVENGNIILHTNRTLEEVTGD-QMGVTGV  221 (321)
T ss_pred             HcCCCEEEEECCCHHHHHHHHHHHhhCCEEEEEEECCccCCCHHHHHHHHhhccCCCeEEEeCCEEEEEEcC-CccEEEE
Confidence            3468999999999999999999999999887                2344566889999999999999853 3344456


Q ss_pred             EcCCC------CEEeCCEEEEccCCccCCchhhhcCCcccCCCEEeCC-----CCCCCCCceEEeccccccC
Q 012165          268 KLEDG------STIDADTIVIGIGAKPTVSPFERVGLNSSVGGIQVDG-----QFRTRMPGIFAIGDVAAFP  328 (469)
Q Consensus       268 ~~~~g------~~i~~D~vi~a~G~~p~~~~~~~~gl~~~~g~i~Vd~-----~~~t~~~~Vfa~GD~a~~~  328 (469)
                      ++.++      +++++|.||+++|.+||..+++. ++..++|+|.||+     +++|++|+|||+|||+..+
T Consensus       222 ~~~~~~~~~~~~~i~~D~vv~a~G~~p~~~l~~~-~l~~~~g~i~vd~~~~~~~~~t~~~~VyA~GD~~~~~  292 (321)
T PRK10262        222 RLRDTQNSDNIESLDVAGLFVAIGHSPNTAIFEG-QLELENGYIKVQSGIHGNATQTSIPGVFAAGDVMDHI  292 (321)
T ss_pred             EEEEcCCCCeEEEEECCEEEEEeCCccChhHhhc-cccccCCEEEECCCCcccccccCCCCEEECeeccCCC
Confidence            65432      47999999999999999887654 5666678899997     7899999999999999754

>PRK15317 alkyl hydroperoxide reductase subunit F; Provisional

Probab=100.00  E-value=1e-31  Score=276.74  Aligned_cols=276  Identities=22%  Similarity=0.315  Sum_probs=195.7

Q ss_pred             CCCCcEEEEcCcHHHHHHHHHHHHcCCCCCcEEEEcCCCCCCCCCCCCcccccCCCCCCCCCCCCCccccCCCCCCCCHh
Q 012165           49 NENREFVIVGGGNAAGYAARTFVEHGMADGRLCIVSKEAYAPYERPALTKGYLFPLDKKPARLPGFHTCVGSGGERQTPE  128 (469)
Q Consensus        49 ~~~~~vvIIGgG~AGl~aA~~L~~~g~~~~~V~vie~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  128 (469)
                      ...+||+||||||||++||.+|++.|+   +++|+++..  +... .  ...      ...+++.+....+........+
T Consensus       209 ~~~~dvvIIGgGpaGl~aA~~la~~G~---~v~li~~~~--GG~~-~--~~~------~~~~~~~~~~~~~~~l~~~l~~  274 (517)
T PRK15317        209 KDPYDVLVVGGGPAGAAAAIYAARKGI---RTGIVAERF--GGQV-L--DTM------GIENFISVPETEGPKLAAALEE  274 (517)
T ss_pred             CCCCCEEEECCCHHHHHHHHHHHHCCC---cEEEEecCC--CCee-e--ccC------cccccCCCCCCCHHHHHHHHHH
Confidence            346899999999999999999999988   799997641  1110 0  000      0011111111111111233456


Q ss_pred             HHHHCCcEEEeCCcEEEEeCC--CcEEEeCCCeEEEeccEEeccCCCCCcCCCCCCCC---cCcEEEecCHHHHHHHHHh
Q 012165          129 WYKEKGIEMIYQDPVTSIDIE--KQTLITNSGKLLKYGSLIVATGCTASRFPEKIGGY---LPGVHYIRDVADADALISS  203 (469)
Q Consensus       129 ~~~~~~i~~~~~~~v~~id~~--~~~v~~~~g~~~~yd~lVlAtG~~~~~~~~~~g~~---~~~v~~~~~~~~~~~~~~~  203 (469)
                      .+++++++++.+++|.+++..  ...|.+.++.++.||+||+|||++++ .+.+||..   ..++++....   +   ..
T Consensus       275 ~~~~~gv~i~~~~~V~~I~~~~~~~~V~~~~g~~i~a~~vViAtG~~~r-~~~ipG~~~~~~~~v~~~~~~---~---~~  347 (517)
T PRK15317        275 HVKEYDVDIMNLQRASKLEPAAGLIEVELANGAVLKAKTVILATGARWR-NMNVPGEDEYRNKGVAYCPHC---D---GP  347 (517)
T ss_pred             HHHHCCCEEEcCCEEEEEEecCCeEEEEECCCCEEEcCEEEECCCCCcC-CCCCCCHHHhcCceEEEeecc---C---ch
Confidence            677889999998899999886  34677788888999999999999986 45556532   2344443211   1   12


Q ss_pred             hhcCCeEEEEcCChHHHHHHHHHHhCCCeEe------------eeHHHHHH-cCcEEEcCCeEEEEEeCCCCcEEEEEcC
Q 012165          204 LEKAKKVVVVGGGYIGMEVAAAAVGWKLDTT------------RYEQLYQQ-NGVKFVKGASIKNLEAGSDGRVAAVKLE  270 (469)
Q Consensus       204 ~~~~~~vvVvG~G~~g~e~A~~l~~~g~~v~------------~~~~~l~~-~gV~~~~~~~v~~i~~~~~~~v~~v~~~  270 (469)
                      ..++++++|||+|++|+|+|..|+..+.+|+            .+.+.+.+ .||++++++.+.++..+ ++.+..+.+.
T Consensus       348 ~~~gk~VvVVGgG~~g~e~A~~L~~~~~~Vtlv~~~~~l~~~~~l~~~l~~~~gI~i~~~~~v~~i~~~-~g~v~~v~~~  426 (517)
T PRK15317        348 LFKGKRVAVIGGGNSGVEAAIDLAGIVKHVTVLEFAPELKADQVLQDKLRSLPNVTIITNAQTTEVTGD-GDKVTGLTYK  426 (517)
T ss_pred             hcCCCEEEEECCCHHHHHHHHHHHhcCCEEEEEEECccccccHHHHHHHhcCCCcEEEECcEEEEEEcC-CCcEEEEEEE
Confidence            3468999999999999999999999999887            12344544 69999999999999853 4566666664


Q ss_pred             C---C--CEEeCCEEEEccCCccCCchhhhcCCccc-CCCEEeCCCCCCCCCceEEeccccccCCccCCcccccchHHHH
Q 012165          271 D---G--STIDADTIVIGIGAKPTVSPFERVGLNSS-VGGIQVDGQFRTRMPGIFAIGDVAAFPLKMYDRTARVEHVDHA  344 (469)
Q Consensus       271 ~---g--~~i~~D~vi~a~G~~p~~~~~~~~gl~~~-~g~i~Vd~~~~t~~~~Vfa~GD~a~~~~~~~~~~~~~~~~~~A  344 (469)
                      +   |  +++++|.+++++|.+||+++++.. +..+ +|+|.||+++||++|+|||+|||+..+...         +..|
T Consensus       427 ~~~~g~~~~i~~D~v~~~~G~~p~~~~l~~~-v~~~~~g~i~vd~~l~Ts~p~IyAaGDv~~~~~k~---------~~~A  496 (517)
T PRK15317        427 DRTTGEEHHLELEGVFVQIGLVPNTEWLKGT-VELNRRGEIIVDARGATSVPGVFAAGDCTTVPYKQ---------IIIA  496 (517)
T ss_pred             ECCCCcEEEEEcCEEEEeECCccCchHHhhh-eeeCCCCcEEECcCCCCCCCCEEECccccCCCCCE---------EEEh
Confidence            3   3  359999999999999999998776 6554 578999999999999999999999865421         1225


Q ss_pred             HHHHHHHHHHHh
Q 012165          345 RQSAQHCIKALL  356 (469)
Q Consensus       345 ~~~a~~~a~~i~  356 (469)
                      +.+|..||.++.
T Consensus       497 ~~eG~~Aa~~~~  508 (517)
T PRK15317        497 MGEGAKAALSAF  508 (517)
T ss_pred             hhhHHHHHHHHH
Confidence            555555555543

>COG0492 TrxB Thioredoxin reductase [Posttranslational modification, protein turnover, chaperones]

Probab=100.00  E-value=4.4e-32  Score=256.90  Aligned_cols=254  Identities=27%  Similarity=0.367  Sum_probs=197.3

Q ss_pred             CCCcEEEEcCcHHHHHHHHHHHHcCCCCCc-EEEEcCCCCCCCCCCCCcccccCCCCCCCCCCCCCcc-ccCCCCCCCCH
Q 012165           50 ENREFVIVGGGNAAGYAARTFVEHGMADGR-LCIVSKEAYAPYERPALTKGYLFPLDKKPARLPGFHT-CVGSGGERQTP  127 (469)
Q Consensus        50 ~~~~vvIIGgG~AGl~aA~~L~~~g~~~~~-V~vie~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~  127 (469)
                      +++||+|||||||||+||.++.+.+.   + ++|+|+...-.         ++.... ...++|++.. ..+..+..+..
T Consensus         2 ~~~DviIIG~GPAGl~AAiya~r~~l---~~~li~~~~~~gg---------~~~~~~-~venypg~~~~~~g~~L~~~~~   68 (305)
T COG0492           2 KIYDVIIIGGGPAGLTAAIYAARAGL---KVVLILEGGEPGG---------QLTKTT-DVENYPGFPGGILGPELMEQMK   68 (305)
T ss_pred             ceeeEEEECCCHHHHHHHHHHHHcCC---CcEEEEecCCcCC---------ccccce-eecCCCCCccCCchHHHHHHHH
Confidence            56899999999999999999999986   5 56666543221         111111 4556666654 44555555666


Q ss_pred             hHHHHCCcEEEeCCcEEEEeCCC--cEEEeCCCeEEEeccEEeccCCCCCcCCCCCCCC---cCcEEEecCHHHHHHHHH
Q 012165          128 EWYKEKGIEMIYQDPVTSIDIEK--QTLITNSGKLLKYGSLIVATGCTASRFPEKIGGY---LPGVHYIRDVADADALIS  202 (469)
Q Consensus       128 ~~~~~~~i~~~~~~~v~~id~~~--~~v~~~~g~~~~yd~lVlAtG~~~~~~~~~~g~~---~~~v~~~~~~~~~~~~~~  202 (469)
                      ++....++++.. ..|..++...  +.|.+++++ +++++||||||..++. |.+++..   ..+++++..   ++.   
T Consensus        69 ~~a~~~~~~~~~-~~v~~v~~~~~~F~v~t~~~~-~~ak~vIiAtG~~~~~-~~~~~e~e~~g~gv~yc~~---cdg---  139 (305)
T COG0492          69 EQAEKFGVEIVE-DEVEKVELEGGPFKVKTDKGT-YEAKAVIIATGAGARK-LGVPGEEEFEGKGVSYCAT---CDG---  139 (305)
T ss_pred             HHHhhcCeEEEE-EEEEEEeecCceEEEEECCCe-EEEeEEEECcCCcccC-CCCCcchhhcCCceEEeee---cCc---
Confidence            677778999888 6888998874  688888888 9999999999999874 4444422   246777643   222   


Q ss_pred             hhhcCCeEEEEcCChHHHHHHHHHHhCCCeEe------------eeHHHHHHc-CcEEEcCCeEEEEEeCCCCcEEEEEc
Q 012165          203 SLEKAKKVVVVGGGYIGMEVAAAAVGWKLDTT------------RYEQLYQQN-GVKFVKGASIKNLEAGSDGRVAAVKL  269 (469)
Q Consensus       203 ~~~~~~~vvVvG~G~~g~e~A~~l~~~g~~v~------------~~~~~l~~~-gV~~~~~~~v~~i~~~~~~~v~~v~~  269 (469)
                       +..+++++|||||.+++|-|.+|.+++.+|+            .+.+.+++. +|++++++.+.++..+  + +.+|++
T Consensus       140 -~~~~k~v~ViGgG~sAve~Al~L~~~a~~Vtlv~r~~~~ra~~~~~~~l~~~~~i~~~~~~~i~ei~G~--~-v~~v~l  215 (305)
T COG0492         140 -FFKGKDVVVIGGGDSAVEEALYLSKIAKKVTLVHRRDEFRAEEILVERLKKNVKIEVLTNTVVKEILGD--D-VEGVVL  215 (305)
T ss_pred             -cccCCeEEEEcCCHHHHHHHHHHHHhcCeEEEEecCcccCcCHHHHHHHHhcCCeEEEeCCceeEEecC--c-cceEEE
Confidence             3578899999999999999999999999888            345556655 8999999999999843  3 667777


Q ss_pred             CCC----CEEeCCEEEEccCCccCCchhhhcCCcccCCCEEeCCCCCCCCCceEEeccccccCC
Q 012165          270 EDG----STIDADTIVIGIGAKPTVSPFERVGLNSSVGGIQVDGQFRTRMPGIFAIGDVAAFPL  329 (469)
Q Consensus       270 ~~g----~~i~~D~vi~a~G~~p~~~~~~~~gl~~~~g~i~Vd~~~~t~~~~Vfa~GD~a~~~~  329 (469)
                      ++.    +++++|-+++++|..|++++++..++..+.|.|.||+.++||+|+|||+||++..+.
T Consensus       216 ~~~~~~~~~~~~~gvf~~iG~~p~~~~~~~~~~~~~~g~I~v~~~~~TsvpGifAaGDv~~~~~  279 (305)
T COG0492         216 KNVKGEEKELPVDGVFIAIGHLPNTELLKGLGVLDENGYIVVDEEMETSVPGIFAAGDVADKNG  279 (305)
T ss_pred             EecCCceEEEEeceEEEecCCCCchHHHhhccccCCCCcEEcCCCcccCCCCEEEeEeeccCcc
Confidence            764    278999999999999999999988875557899999999999999999999998764

>TIGR03143 AhpF_homolog putative alkyl hydroperoxide reductase F subunit

Probab=100.00  E-value=4.2e-31  Score=273.85  Aligned_cols=272  Identities=21%  Similarity=0.295  Sum_probs=187.4

Q ss_pred             CCCcEEEEcCcHHHHHHHHHHHHcCCCCCcEEEEcCCCCCCCCCCCCcccccCCCCCCCCCCCCCccccCCCCCCCCHhH
Q 012165           50 ENREFVIVGGGNAAGYAARTFVEHGMADGRLCIVSKEAYAPYERPALTKGYLFPLDKKPARLPGFHTCVGSGGERQTPEW  129 (469)
Q Consensus        50 ~~~~vvIIGgG~AGl~aA~~L~~~g~~~~~V~vie~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  129 (469)
                      ..+||+||||||||++||.+|++.|+   +|+|+|++...+.. . ...        ....+|++....+........+.
T Consensus         3 ~~yDVvIIGgGpAGL~AA~~lar~g~---~V~liE~~~~GG~~-~-~~~--------~i~~~pg~~~~~~~~l~~~l~~~   69 (555)
T TIGR03143         3 EIYDLIIIGGGPAGLSAGIYAGRAKL---DTLIIEKDDFGGQI-T-ITS--------EVVNYPGILNTTGPELMQEMRQQ   69 (555)
T ss_pred             CcCcEEEECCCHHHHHHHHHHHHCCC---CEEEEecCCCCceE-E-ecc--------ccccCCCCcCCCHHHHHHHHHHH
Confidence            35899999999999999999999987   79999986532110 0 000        00111211111111111223445


Q ss_pred             HHHCCcEEEeCCcEEEEeCCCc--EEEeCCCeEEEeccEEeccCCCCCcCCCCCCCC---cCcEEEecCHHHHHHHHHhh
Q 012165          130 YKEKGIEMIYQDPVTSIDIEKQ--TLITNSGKLLKYGSLIVATGCTASRFPEKIGGY---LPGVHYIRDVADADALISSL  204 (469)
Q Consensus       130 ~~~~~i~~~~~~~v~~id~~~~--~v~~~~g~~~~yd~lVlAtG~~~~~~~~~~g~~---~~~v~~~~~~~~~~~~~~~~  204 (469)
                      +++.+++++ .++|+.++.++.  .|.+.++ .+.|++||||||++|+. |.++|.+   ..+++++.....      ..
T Consensus        70 ~~~~gv~~~-~~~V~~i~~~~~~~~V~~~~g-~~~a~~lVlATGa~p~~-~~ipG~~~~~~~~v~~~~~~~~------~~  140 (555)
T TIGR03143        70 AQDFGVKFL-QAEVLDVDFDGDIKTIKTARG-DYKTLAVLIATGASPRK-LGFPGEEEFTGRGVAYCATCDG------EF  140 (555)
T ss_pred             HHHcCCEEe-ccEEEEEEecCCEEEEEecCC-EEEEeEEEECCCCccCC-CCCCCHHHhCCceEEEEeecCh------hh
Confidence            667899986 468999987653  5666555 48999999999999874 5566642   244554432211      23


Q ss_pred             hcCCeEEEEcCChHHHHHHHHHHhCCCeEe-------------eeHHHHHHcCcEEEcCCeEEEEEeCCCCcEEEEE---
Q 012165          205 EKAKKVVVVGGGYIGMEVAAAAVGWKLDTT-------------RYEQLYQQNGVKFVKGASIKNLEAGSDGRVAAVK---  268 (469)
Q Consensus       205 ~~~~~vvVvG~G~~g~e~A~~l~~~g~~v~-------------~~~~~l~~~gV~~~~~~~v~~i~~~~~~~v~~v~---  268 (469)
                      ..+++++|||+|++|+|+|..|.+++.+|+             ...+.++..||++++++.|+++..  ++.+..+.   
T Consensus       141 ~~g~~VvVIGgG~~g~E~A~~L~~~g~~Vtli~~~~~~~~~~~~~~~~~~~~gV~i~~~~~V~~i~~--~~~v~~v~~~~  218 (555)
T TIGR03143       141 FTGMDVFVIGGGFAAAEEAVFLTRYASKVTVIVREPDFTCAKLIAEKVKNHPKIEVKFNTELKEATG--DDGLRYAKFVN  218 (555)
T ss_pred             cCCCEEEEECCCHHHHHHHHHHHccCCEEEEEEeCCccccCHHHHHHHHhCCCcEEEeCCEEEEEEc--CCcEEEEEEEE
Confidence            468999999999999999999999999988             112233456999999999999973  33333333   


Q ss_pred             cCCCCEE----eCCE----EEEccCCccCCchhhhcCCccc-CCCEEeCCCCCCCCCceEEeccccccCCccCCcccccc
Q 012165          269 LEDGSTI----DADT----IVIGIGAKPTVSPFERVGLNSS-VGGIQVDGQFRTRMPGIFAIGDVAAFPLKMYDRTARVE  339 (469)
Q Consensus       269 ~~~g~~i----~~D~----vi~a~G~~p~~~~~~~~gl~~~-~g~i~Vd~~~~t~~~~Vfa~GD~a~~~~~~~~~~~~~~  339 (469)
                      ..+|+..    ++|.    |++++|++|++.+++. ++..+ +|+|.||++++|++|+|||+|||+....         .
T Consensus       219 ~~~G~~~~~~~~~D~~~~~Vi~a~G~~Pn~~l~~~-~l~l~~~G~I~vd~~~~Ts~p~IyAaGDv~~~~~---------~  288 (555)
T TIGR03143       219 NVTGEITEYKAPKDAGTFGVFVFVGYAPSSELFKG-VVELDKRGYIPTNEDMETNVPGVYAAGDLRPKEL---------R  288 (555)
T ss_pred             CCCCCEEEEeccccccceEEEEEeCCCCChhHHhh-hcccCCCCeEEeCCccccCCCCEEEceeccCCCc---------c
Confidence            3456532    3676    9999999999998775 46555 5789999999999999999999975321         1


Q ss_pred             hHHHHHHHHHHHHHHH
Q 012165          340 HVDHARQSAQHCIKAL  355 (469)
Q Consensus       340 ~~~~A~~~a~~~a~~i  355 (469)
                      .+..|..+|+.+|.+|
T Consensus       289 ~v~~A~~~G~~Aa~~i  304 (555)
T TIGR03143       289 QVVTAVADGAIAATSA  304 (555)
T ss_pred             hheeHHhhHHHHHHHH
Confidence            2345777777777776

This family of thioredoxin reductase homologs is found adjacent to alkylhydroperoxide reductase C subunit predominantly in cases where there is only one C subunit in the genome and that genome is lacking the F subunit partner (also a thioredcxin reductase homolog) that is usually found (TIGR03140).

>COG0446 HcaD Uncharacterized NAD(FAD)-dependent dehydrogenases [General function prediction only]

Probab=99.97  E-value=1.1e-29  Score=256.17  Aligned_cols=305  Identities=29%  Similarity=0.344  Sum_probs=246.4

Q ss_pred             EEEEcCcHHHHHHHHHHHHcCCCCCcEEEEcCCCCCCCCCCCCcccccCCCCCCCCCCCCCccccCCCCCCCCHhHHHHC
Q 012165           54 FVIVGGGNAAGYAARTFVEHGMADGRLCIVSKEAYAPYERPALTKGYLFPLDKKPARLPGFHTCVGSGGERQTPEWYKEK  133 (469)
Q Consensus        54 vvIIGgG~AGl~aA~~L~~~g~~~~~V~vie~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  133 (469)
                      ++|||+|++|+++|..|++... +.+|+++..++..+|.+++++..+..... ....+.           .... +..+.
T Consensus         1 ivivG~g~aG~~aa~~l~~~~~-~~~i~i~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~-----------~~~~-~~~~~   66 (415)
T COG0446           1 IVIVGGGAAGLSAATTLRRLLL-AAEITLIGREPKYSYYRCPLSLYVGGGIA-SLEDLR-----------YPPR-FNRAT   66 (415)
T ss_pred             CEEECCcHHHHHHHHHHHhcCC-CCCEEEEeCCCCCCCCCCccchHHhcccC-CHHHhc-----------ccch-hHHhh
Confidence            5899999999999999999875 78999999999988988888764433221 111110           1112 33577


Q ss_pred             CcEEEeCCcEEEEeCCCcEEEeCCCeEEEeccEEeccCCCCCcCCCCCCCCcCcEEEecCHHHHHHHHHhhhcCCeEEEE
Q 012165          134 GIEMIYQDPVTSIDIEKQTLITNSGKLLKYGSLIVATGCTASRFPEKIGGYLPGVHYIRDVADADALISSLEKAKKVVVV  213 (469)
Q Consensus       134 ~i~~~~~~~v~~id~~~~~v~~~~g~~~~yd~lVlAtG~~~~~~~~~~g~~~~~v~~~~~~~~~~~~~~~~~~~~~vvVv  213 (469)
                      ++++..+++|..+|+..+.+.+.++ ++.||+|++|||+++...|   +...+++++++...+.+.+.......++++|+
T Consensus        67 ~i~~~~~~~v~~id~~~~~v~~~~g-~~~yd~LvlatGa~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~vv  142 (415)
T COG0446          67 GIDVRTGTEVTSIDPENKVVLLDDG-EIEYDYLVLATGARPRPPP---ISDWEGVVTLRLREDAEALKGGAEPPKDVVVV  142 (415)
T ss_pred             CCEEeeCCEEEEecCCCCEEEECCC-cccccEEEEcCCCcccCCC---ccccCceEEECCHHHHHHHHHHHhccCeEEEE
Confidence            9999999999999999999999999 7999999999999998544   45577899999999998887776667999999


Q ss_pred             cCChHHHHHHHHHHhCCCeEe-------------------eeHHHHHHcCcEEEcCCeEEEEEeCCCCcEEE-EEcCCCC
Q 012165          214 GGGYIGMEVAAAAVGWKLDTT-------------------RYEQLYQQNGVKFVKGASIKNLEAGSDGRVAA-VKLEDGS  273 (469)
Q Consensus       214 G~G~~g~e~A~~l~~~g~~v~-------------------~~~~~l~~~gV~~~~~~~v~~i~~~~~~~v~~-v~~~~g~  273 (469)
                      |+|++|+|+|..+.++|.+++                   .+.+.+++.||+++++..+.+++...+..... +...++.
T Consensus       143 G~G~~gle~A~~~~~~G~~v~l~e~~~~~~~~~~~~~~~~~~~~~l~~~gi~~~~~~~~~~i~~~~~~~~~~~~~~~~~~  222 (415)
T COG0446         143 GAGPIGLEAAEAAAKRGKKVTLIEAADRLGGQLLDPEVAEELAELLEKYGVELLLGTKVVGVEGKGNTLVVERVVGIDGE  222 (415)
T ss_pred             CCcHHHHHHHHHHHHcCCeEEEEEcccccchhhhhHHHHHHHHHHHHHCCcEEEeCCceEEEEcccCcceeeEEEEeCCc
Confidence            999999999999999999987                   34677889999999999999998543222211 5778888


Q ss_pred             EEeCCEEEEccCCccCCchhhhcC--CcccCCCEEeCCCCCCC-CCceEEeccccccCCccCCcccccchHHHHHHHHHH
Q 012165          274 TIDADTIVIGIGAKPTVSPFERVG--LNSSVGGIQVDGQFRTR-MPGIFAIGDVAAFPLKMYDRTARVEHVDHARQSAQH  350 (469)
Q Consensus       274 ~i~~D~vi~a~G~~p~~~~~~~~g--l~~~~g~i~Vd~~~~t~-~~~Vfa~GD~a~~~~~~~~~~~~~~~~~~A~~~a~~  350 (469)
                      .+++|++++++|.+||..+....+  +....|+|.||++++|+ .++|||+|||+..+....+......+++.+..+++.
T Consensus       223 ~~~~d~~~~~~g~~p~~~l~~~~~~~~~~~~g~i~v~~~~~~~~~~~v~a~GD~~~~~~~~~~~~~~~~~~~~a~~~~~i  302 (415)
T COG0446         223 EIKADLVIIGPGERPNVVLANDALPGLALAGGAVLVDERGGTSKDPDVYAAGDVAEIPAAETGKGGRIALWAIAVAAGRI  302 (415)
T ss_pred             EEEeeEEEEeecccccHHHHhhCccceeccCCCEEEccccccCCCCCEEeccceEeeecccCCceeeeechhhHhhhhHH
Confidence            999999999999999977777765  45556789999999997 999999999999876544444557789999999999


Q ss_pred             HHHHHhcCCCCCCCCCCceeeeccccc
Q 012165          351 CIKALLSAQTHTYDYLPYFYSRVFEYE  377 (469)
Q Consensus       351 ~a~~i~~~~~~~~~~~p~~~~~~~~~~  377 (469)
                      ++.++.+. .......+++|.+++.+.
T Consensus       303 ~~~~~~~~-~~~~~~~~~~~~~~~~~~  328 (415)
T COG0446         303 AAENIAGA-LRIPGLLGTVISDVGDLC  328 (415)
T ss_pred             HHHHhccc-cccccccCceEEEEcCeE
Confidence            99999865 333456788888887753

>PRK12770 putative glutamate synthase subunit beta; Provisional

Probab=99.97  E-value=1.2e-29  Score=249.53  Aligned_cols=274  Identities=25%  Similarity=0.287  Sum_probs=189.3

Q ss_pred             CCCCcEEEEcCcHHHHHHHHHHHHcCCCCCcEEEEcCCCCCCCCCCCCcccccCCCCCCCCCCCCCccccCCCCCCCCHh
Q 012165           49 NENREFVIVGGGNAAGYAARTFVEHGMADGRLCIVSKEAYAPYERPALTKGYLFPLDKKPARLPGFHTCVGSGGERQTPE  128 (469)
Q Consensus        49 ~~~~~vvIIGgG~AGl~aA~~L~~~g~~~~~V~vie~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  128 (469)
                      ...++|+|||+|++|+++|..|++.|+   +|+++|+.+.+...   +...  .+..    .++.       .......+
T Consensus        16 ~~~~~VvIIG~G~aGl~aA~~l~~~g~---~v~lie~~~~~gg~---~~~~--~~~~----~~~~-------~~~~~~~~   76 (352)
T PRK12770         16 PTGKKVAIIGAGPAGLAAAGYLACLGY---EVHVYDKLPEPGGL---MLFG--IPEF----RIPI-------ERVREGVK   76 (352)
T ss_pred             CCCCEEEEECcCHHHHHHHHHHHHCCC---cEEEEeCCCCCCce---eeec--Cccc----ccCH-------HHHHHHHH
Confidence            345799999999999999999999987   79999988764211   0000  0000    0000       00012234


Q ss_pred             HHHHCCcEEEeCCcEEEEeC----CC-----cEEEeCCCeEEEeccEEeccCCC-CCcCCCCCCCCcCcEEEecCHHHHH
Q 012165          129 WYKEKGIEMIYQDPVTSIDI----EK-----QTLITNSGKLLKYGSLIVATGCT-ASRFPEKIGGYLPGVHYIRDVADAD  198 (469)
Q Consensus       129 ~~~~~~i~~~~~~~v~~id~----~~-----~~v~~~~g~~~~yd~lVlAtG~~-~~~~~~~~g~~~~~v~~~~~~~~~~  198 (469)
                      .+.+.+++++.++.+..++.    ..     ..+..+ +..+.||+||||||+. ++ .|.++|.+.+++++..  ....
T Consensus        77 ~l~~~~i~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~-~~~~~~d~lviAtGs~~~~-~~~ipg~~~~~v~~~~--~~~~  152 (352)
T PRK12770         77 ELEEAGVVFHTRTKVCCGEPLHEEEGDEFVERIVSLE-ELVKKYDAVLIATGTWKSR-KLGIPGEDLPGVYSAL--EYLF  152 (352)
T ss_pred             HHHhCCeEEecCcEEeeccccccccccccccccCCHH-HHHhhCCEEEEEeCCCCCC-cCCCCCccccCceeHH--HHHH
Confidence            45667999998877655432    01     111111 2237899999999995 54 5667776667766532  1112


Q ss_pred             HHHHh-----------hhcCCeEEEEcCChHHHHHHHHHHhCCCe-Ee--------------eeHHHHHHcCcEEEcCCe
Q 012165          199 ALISS-----------LEKAKKVVVVGGGYIGMEVAAAAVGWKLD-TT--------------RYEQLYQQNGVKFVKGAS  252 (469)
Q Consensus       199 ~~~~~-----------~~~~~~vvVvG~G~~g~e~A~~l~~~g~~-v~--------------~~~~~l~~~gV~~~~~~~  252 (469)
                      .+...           ...+++++|||+|++|+|+|..|..+|.+ ++              ...+.++++||+++++..
T Consensus       153 ~~~~~~~~~~~~~~~~~~~g~~vvViG~G~~g~e~A~~l~~~g~~~Vtvi~~~~~~~~~~~~~~~~~l~~~gi~i~~~~~  232 (352)
T PRK12770        153 RIRAAKLGYLPWEKVPPVEGKKVVVVGAGLTAVDAALEAVLLGAEKVYLAYRRTINEAPAGKYEIERLIARGVEFLELVT  232 (352)
T ss_pred             HhhhccccccccccccccCCCEEEEECCCHHHHHHHHHHHHcCCCeEEEEeecchhhCCCCHHHHHHHHHcCCEEeeccC
Confidence            21110           11268999999999999999999988887 66              224567889999999999


Q ss_pred             EEEEEeCCCCcEEEEEc--------------------CCCCEEeCCEEEEccCCccCCchhhh-cCCccc-CCCEEeCCC
Q 012165          253 IKNLEAGSDGRVAAVKL--------------------EDGSTIDADTIVIGIGAKPTVSPFER-VGLNSS-VGGIQVDGQ  310 (469)
Q Consensus       253 v~~i~~~~~~~v~~v~~--------------------~~g~~i~~D~vi~a~G~~p~~~~~~~-~gl~~~-~g~i~Vd~~  310 (469)
                      +.+++..  +.+..+++                    .+++.+++|.+|+++|++|++.+..+ +++..+ +|++.||++
T Consensus       233 v~~i~~~--~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~D~vi~a~G~~p~~~l~~~~~g~~~~~~g~i~vd~~  310 (352)
T PRK12770        233 PVRIIGE--GRVEGVELAKMRLGEPDESGRPRPVPIPGSEFVLEADTVVFAIGEIPTPPFAKECLGIELNRKGEIVVDEK  310 (352)
T ss_pred             ceeeecC--CcEeEEEEEEEEecCcCcccCcCceecCCCeEEEECCEEEECcccCCCchhhhcccCceecCCCcEeeCCC
Confidence            9998742  33433432                    12357999999999999999887766 777765 467999999


Q ss_pred             CCCCCCceEEeccccccCCccCCcccccchHHHHHHHHHHHHHHHhc
Q 012165          311 FRTRMPGIFAIGDVAAFPLKMYDRTARVEHVDHARQSAQHCIKALLS  357 (469)
Q Consensus       311 ~~t~~~~Vfa~GD~a~~~~~~~~~~~~~~~~~~A~~~a~~~a~~i~~  357 (469)
                      ++|+.|+|||+|||+..+.          .+..|+.+|+.+|.+|..
T Consensus       311 ~~t~~~~vyaiGD~~~~~~----------~~~~A~~~g~~aa~~i~~  347 (352)
T PRK12770        311 HMTSREGVFAAGDVVTGPS----------KIGKAIKSGLRAAQSIHE  347 (352)
T ss_pred             cccCCCCEEEEcccccCcc----------hHHHHHHHHHHHHHHHHH
Confidence            9999999999999997543          355688899998888753

>KOG2495 consensus NADH-dehydrogenase (ubiquinone) [Energy production and conversion]

Probab=99.96  E-value=9.1e-28  Score=225.82  Aligned_cols=278  Identities=21%  Similarity=0.305  Sum_probs=195.5

Q ss_pred             CCCCCCcEEEEcCcHHHHHHHHHHHHcCCCCCcEEEEcCCCCCCCCCCCCcccccCCCCCCCCCCCCCccccCCCCCCCC
Q 012165           47 FANENREFVIVGGGNAAGYAARTFVEHGMADGRLCIVSKEAYAPYERPALTKGYLFPLDKKPARLPGFHTCVGSGGERQT  126 (469)
Q Consensus        47 ~~~~~~~vvIIGgG~AGl~aA~~L~~~g~~~~~V~vie~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  126 (469)
                      ...++++|||+|+|.+|.+++..|-...+   +|++|++.+++.|. |.|+......-+     +...        .+..
T Consensus        51 ~~~kKk~vVVLGsGW~a~S~lk~ldts~Y---dV~vVSPRnyFlFT-PLLpS~~vGTve-----~rSI--------vEPI  113 (491)
T KOG2495|consen   51 NGGKKKRVVVLGSGWGAISLLKKLDTSLY---DVTVVSPRNYFLFT-PLLPSTTVGTVE-----LRSI--------VEPI  113 (491)
T ss_pred             CCCCCceEEEEcCchHHHHHHHhcccccc---ceEEeccccceEEe-eccCCcccccee-----ehhh--------hhhH
Confidence            34567899999999999999998877655   89999999998876 555432221110     0000        0111


Q ss_pred             HhHHHHC--CcEEEeCCcEEEEeCCCcEEEeC----CC----eEEEeccEEeccCCCCCcCCCCCCCCcCcEEEecCHHH
Q 012165          127 PEWYKEK--GIEMIYQDPVTSIDIEKQTLITN----SG----KLLKYGSLIVATGCTASRFPEKIGGYLPGVHYIRDVAD  196 (469)
Q Consensus       127 ~~~~~~~--~i~~~~~~~v~~id~~~~~v~~~----~g----~~~~yd~lVlAtG~~~~~~~~~~g~~~~~v~~~~~~~~  196 (469)
                      ....+..  ++.++. .+.+.+|++++.|++.    ++    -.+.|||||+|+|+.+.. ..+||- .++.+.++..+|
T Consensus       114 r~i~r~k~~~~~y~e-Aec~~iDp~~k~V~~~s~t~~~~~~e~~i~YDyLViA~GA~~~T-FgipGV-~e~~~FLKEv~d  190 (491)
T KOG2495|consen  114 RAIARKKNGEVKYLE-AECTKIDPDNKKVHCRSLTADSSDKEFVIGYDYLVIAVGAEPNT-FGIPGV-EENAHFLKEVED  190 (491)
T ss_pred             HHHhhccCCCceEEe-cccEeecccccEEEEeeeccCCCcceeeecccEEEEeccCCCCC-CCCCch-hhchhhhhhhhH
Confidence            2223322  455555 6889999999987653    34    368999999999999874 444443 233456777888


Q ss_pred             HHHHHHhhh-----------------cCCeEEEEcCChHHHHHHHHHHhCC--------------CeEe-----------
Q 012165          197 ADALISSLE-----------------KAKKVVVVGGGYIGMEVAAAAVGWK--------------LDTT-----------  234 (469)
Q Consensus       197 ~~~~~~~~~-----------------~~~~vvVvG~G~~g~e~A~~l~~~g--------------~~v~-----------  234 (469)
                      +++++..+-                 +--+++|||||++|+|+|.+|+..-              .+++           
T Consensus       191 AqeIR~~~~~~le~a~~~~l~~eerkRlLh~VVVGGGPTGVEFAaEL~Dfi~~Dl~k~yp~l~~~i~vtLiEA~d~iL~m  270 (491)
T KOG2495|consen  191 AQEIRRKVIDNLEKAELPGLSDEERKRLLHFVVVGGGPTGVEFAAELADFIPEDLRKIYPELKKDIKVTLIEAADHILNM  270 (491)
T ss_pred             HHHHHHHHHHHHHHhhcCCCChHHhhheEEEEEECCCCcceeehHHHHHHHHHHHHHhhhcchhheEEEeeccchhHHHH
Confidence            887754321                 1137999999999999999987541              2222           


Q ss_pred             -------eeHHHHHHcCcEEEcCCeEEEEEeCCCCcEEEEEcCCC--CEEeCCEEEEccCCccCCchhhhcCCccc---C
Q 012165          235 -------RYEQLYQQNGVKFVKGASIKNLEAGSDGRVAAVKLEDG--STIDADTIVIGIGAKPTVSPFERVGLNSS---V  302 (469)
Q Consensus       235 -------~~~~~l~~~gV~~~~~~~v~~i~~~~~~~v~~v~~~~g--~~i~~D~vi~a~G~~p~~~~~~~~gl~~~---~  302 (469)
                             ..++.+.+.||++.+++.|..++.   ..+ .+...||  ++|++-+++|++|..|. ++.+.+....+   +
T Consensus       271 Fdkrl~~yae~~f~~~~I~~~~~t~Vk~V~~---~~I-~~~~~~g~~~~iPYG~lVWatG~~~r-p~~k~lm~~i~e~~r  345 (491)
T KOG2495|consen  271 FDKRLVEYAENQFVRDGIDLDTGTMVKKVTE---KTI-HAKTKDGEIEEIPYGLLVWATGNGPR-PVIKDLMKQIDEQGR  345 (491)
T ss_pred             HHHHHHHHHHHHhhhccceeecccEEEeecC---cEE-EEEcCCCceeeecceEEEecCCCCCc-hhhhhHhhcCCccCc
Confidence                   456778889999999999999873   222 3444455  57999999999999886 44444333222   3


Q ss_pred             CCEEeCCCCCC-CCCceEEeccccccCCccCCcccccchHHHHHHHHHHHHHHHh
Q 012165          303 GGIQVDGQFRT-RMPGIFAIGDVAAFPLKMYDRTARVEHVDHARQSAQHCIKALL  356 (469)
Q Consensus       303 g~i~Vd~~~~t-~~~~Vfa~GD~a~~~~~~~~~~~~~~~~~~A~~~a~~~a~~i~  356 (469)
                      .++.||++||. +.+||||+|||+..+..       .+..+.|.+||.++|+++-
T Consensus       346 r~L~vDE~LrV~G~~nvfAiGDca~~~~~-------~~tAQVA~QqG~yLAk~fn  393 (491)
T KOG2495|consen  346 RGLAVDEWLRVKGVKNVFAIGDCADQRGL-------KPTAQVAEQQGAYLAKNFN  393 (491)
T ss_pred             eeeeeeceeeccCcCceEEeccccccccC-------ccHHHHHHHHHHHHHHHHH
Confidence            47999999998 88999999999954332       2256679999999999873

>PRK06567 putative bifunctional glutamate synthase subunit beta/2-polyprenylphenol hydroxylase; Validated

Probab=99.95  E-value=2.5e-27  Score=248.49  Aligned_cols=270  Identities=13%  Similarity=0.096  Sum_probs=172.5

Q ss_pred             cccccccccccc-cccccCCCCcccccc-cCCccccccccccc-----------------c-------cccCCCCCCcEE
Q 012165            2 ASVSNSLSFKHG-LSLWCPQSPSLHRIR-HSSAKNFQRRGFVV-----------------A-------YSSFANENREFV   55 (469)
Q Consensus         2 ~~~~~~~~~~~~-~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~-----------------~-------~~~~~~~~~~vv   55 (469)
                      ..++||||.+|| |+|+ +|+.+|.|.. .+|++..++|++.+                 +       ..+.....++|+
T Consensus       309 i~~~NP~p~~~G~RVCp-~CE~aC~r~~dePV~I~~ler~i~d~~~~~~~~~e~y~~~~~~~~~~~~~~~~~~~tgKKVa  387 (1028)
T PRK06567        309 IVIDNPMVAATGHRICN-DCSKACIYQKQDPVNIPLIESNILEETLKLPYGLEIYLLLTRWNPLNIYAPLPKEPTNYNIL  387 (1028)
T ss_pred             HHHhCCChHhhCCccCc-chHHHhcCCCCCCeehhHHHHHHhhhhhhhcccccccccccccccccccCCCCCCCCCCeEE
Confidence            468999999999 9999 7999999987 79999999985432                 1       012235678999


Q ss_pred             EEcCcHHHHHHHHHHHHcCCCCCcEEEEcCCCCCC--CC--C---------CCCcccccC-CCCCCCCCCCCCccccCCC
Q 012165           56 IVGGGNAAGYAARTFVEHGMADGRLCIVSKEAYAP--YE--R---------PALTKGYLF-PLDKKPARLPGFHTCVGSG  121 (469)
Q Consensus        56 IIGgG~AGl~aA~~L~~~g~~~~~V~vie~~~~~~--~~--~---------~~l~~~~~~-~~~~~~~~~~~~~~~~~~~  121 (469)
                      ||||||||++||.+|++.|+   +||++|+.+..+  |.  .         +.+...... ........++         
T Consensus       388 VVGaGPAGLsAA~~La~~Gh---~Vtv~E~~~i~gl~~~~~~~i~~~~~~~~~L~er~p~~~GG~~~yGIp---------  455 (1028)
T PRK06567        388 VTGLGPAGFSLSYYLLRSGH---NVTAIDGLKITLLPFDVHKPIKFWHEYKNLLSERMPRGFGGVAEYGIT---------  455 (1028)
T ss_pred             EECcCHHHHHHHHHHHhCCC---eEEEEccccccccccccccccchhhhhccchhhhccccCCcccccCcc---------
Confidence            99999999999999999998   799999865321  11  0         111111100 0011111111         


Q ss_pred             CCCCCHhH------HHHC--CcEEEeCCcEEEEeCCCcEEEeCCCeEEEeccEEeccCC-CCCcCCCCCCCCcCcEEEec
Q 012165          122 GERQTPEW------YKEK--GIEMIYQDPVTSIDIEKQTLITNSGKLLKYGSLIVATGC-TASRFPEKIGGYLPGVHYIR  192 (469)
Q Consensus       122 ~~~~~~~~------~~~~--~i~~~~~~~v~~id~~~~~v~~~~g~~~~yd~lVlAtG~-~~~~~~~~~g~~~~~v~~~~  192 (469)
                       .+...+.      ..+.  ++.++.|.+ .     +..++.++-....||+|+||||+ .|+ .+.++|.+.++++...
T Consensus       456 -~R~~k~~l~~i~~il~~g~~v~~~~gv~-l-----G~dit~edl~~~gyDAV~IATGA~kpr-~L~IPGeda~GV~sA~  527 (1028)
T PRK06567        456 -VRWDKNNLDILRLILERNNNFKYYDGVA-L-----DFNITKEQAFDLGFDHIAFCIGAGQPK-VLDIENFEAKGVKTAS  527 (1028)
T ss_pred             -ccchHHHHHHHHHHHhcCCceEEECCeE-E-----CccCCHHHHhhcCCCEEEEeCCCCCCC-CCCCCCccCCCeEEHH
Confidence             0111111      1222  355555533 2     12222222223579999999999 576 5667888778887654


Q ss_pred             CHHHHHHHHHh--------hhcCCeEEEEcCChHHHHHHHHHHh------------------------------------
Q 012165          193 DVADADALISS--------LEKAKKVVVVGGGYIGMEVAAAAVG------------------------------------  228 (469)
Q Consensus       193 ~~~~~~~~~~~--------~~~~~~vvVvG~G~~g~e~A~~l~~------------------------------------  228 (469)
                      ++.........        ...+++|+|||||.+|+|+|.....                                    
T Consensus       528 DfL~~l~~~~~~~~~~~~~~~~Gk~VVVIGGGnTAmD~ArtAlr~~~l~ve~~l~~~~~~~~~~~d~eia~~f~~h~r~~  607 (1028)
T PRK06567        528 DFLMTLQSGGAFLKNSNTNMVIRMPIAVIGGGLTSLDAATESLYYYKKQVEEFAKDYIEKDLTEEDKEIAEEFIAHAKLF  607 (1028)
T ss_pred             HHHHHHhhcccccccccCcccCCCCEEEEcCcHHHHHHHHHHHhhccchhhHHHHhhhhhhcccccHHHHHHHHHHHHhh
Confidence            43222111100        1236899999999999999984432                                    


Q ss_pred             ---------------CCCeEe-----------ee----H--HHHHHcCcEEEcCCeEEEEEeCCCCcEEEEEcC------
Q 012165          229 ---------------WKLDTT-----------RY----E--QLYQQNGVKFVKGASIKNLEAGSDGRVAAVKLE------  270 (469)
Q Consensus       229 ---------------~g~~v~-----------~~----~--~~l~~~gV~~~~~~~v~~i~~~~~~~v~~v~~~------  270 (469)
                                     .|. |+           .+    +  +...+.||+++.+..+.++..+++|.+.++++.      
T Consensus       608 g~~~~~~~v~~l~~~~G~-VtIvYRr~~~empA~~~~~eEv~~A~eEGV~f~~~~~P~~i~~d~~g~v~~l~~~~~~~~~  686 (1028)
T PRK06567        608 KEAKNNEELRKVFNKLGG-ATVYYRGRLQDSPAYKLNHEELIYALALGVDFKENMQPLRINVDKYGHVESVEFENRNRHC  686 (1028)
T ss_pred             cchhccchhhhhhccCCc-eEEEecCChhhCCCCCCCHHHHHHHHHcCcEEEecCCcEEEEecCCCeEEEEEEEEEeccc
Confidence                           121 33           11    1  123578999999999999986666777665442      


Q ss_pred             --------C----------------CCEEeCCEEEEccCCccCCchh
Q 012165          271 --------D----------------GSTIDADTIVIGIGAKPTVSPF  293 (469)
Q Consensus       271 --------~----------------g~~i~~D~vi~a~G~~p~~~~~  293 (469)
                              +                ..+++||.||+|+|..||+.+.
T Consensus       687 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~vi~A~G~~~~~~~~  733 (1028)
T PRK06567        687 EQSKTAWQSHEFGLTRLPRQCYAFPRNDIKTKTVIMAIGIENNTQFD  733 (1028)
T ss_pred             ccccccccccccccCCcCcccCCCccccccCCEEEEecccCCccccc
Confidence                    1                1468999999999999998763

>PLN02852 ferredoxin-NADP+ reductase

Probab=99.95  E-value=1.3e-26  Score=232.71  Aligned_cols=260  Identities=19%  Similarity=0.259  Sum_probs=170.9

Q ss_pred             CCCCCcEEEEcCcHHHHHHHHHHHHcCCCCCcEEEEcCCCCCCCCCCCCcccccCCCCCCCCCCCCCccccCCCCCCCCH
Q 012165           48 ANENREFVIVGGGNAAGYAARTFVEHGMADGRLCIVSKEAYAPYERPALTKGYLFPLDKKPARLPGFHTCVGSGGERQTP  127 (469)
Q Consensus        48 ~~~~~~vvIIGgG~AGl~aA~~L~~~g~~~~~V~vie~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  127 (469)
                      ....++|+||||||||++||..|+++.. ..+|+|+|+.+.+. -   +......+.......+           .....
T Consensus        23 ~~~~~~VaIVGaGPAGl~AA~~L~~~~~-g~~Vtv~E~~p~pg-G---lvr~gvaP~~~~~k~v-----------~~~~~   86 (491)
T PLN02852         23 TSEPLHVCVVGSGPAGFYTADKLLKAHD-GARVDIIERLPTPF-G---LVRSGVAPDHPETKNV-----------TNQFS   86 (491)
T ss_pred             CCCCCcEEEECccHHHHHHHHHHHhhCC-CCeEEEEecCCCCc-c---eEeeccCCCcchhHHH-----------HHHHH
Confidence            3456799999999999999999997321 34899999998642 1   1110111111110000           11233


Q ss_pred             hHHHHCCcEEEeCCcEEEEeCCCcEEEeCCCeEEEeccEEeccCCCCCcCCCCCCCCcCcEEEecCHHH-------HHHH
Q 012165          128 EWYKEKGIEMIYQDPVTSIDIEKQTLITNSGKLLKYGSLIVATGCTASRFPEKIGGYLPGVHYIRDVAD-------ADAL  200 (469)
Q Consensus       128 ~~~~~~~i~~~~~~~v~~id~~~~~v~~~~g~~~~yd~lVlAtG~~~~~~~~~~g~~~~~v~~~~~~~~-------~~~~  200 (469)
                      .++.+.+++++.+..+      ++.+++++-. ..||+||||||+.+.+.+.+||.+.++++...++..       ...+
T Consensus        87 ~~~~~~~v~~~~nv~v------g~dvtl~~L~-~~yDaVIlAtGa~~~~~l~IpG~d~~gV~~a~~fl~~~ng~~d~~~~  159 (491)
T PLN02852         87 RVATDDRVSFFGNVTL------GRDVSLSELR-DLYHVVVLAYGAESDRRLGIPGEDLPGVLSAREFVWWYNGHPDCVHL  159 (491)
T ss_pred             HHHHHCCeEEEcCEEE------CccccHHHHh-hhCCEEEEecCCCCCCCCCCCCCCCCCeEEHHHHHHHhhcchhhhhh
Confidence            4566778998876443      2334444433 479999999999864456678988899987654421       1111


Q ss_pred             HHhhhcCCeEEEEcCChHHHHHHHHHHhC--------------------CCe-Ee---------------eeHH------
Q 012165          201 ISSLEKAKKVVVVGGGYIGMEVAAAAVGW--------------------KLD-TT---------------RYEQ------  238 (469)
Q Consensus       201 ~~~~~~~~~vvVvG~G~~g~e~A~~l~~~--------------------g~~-v~---------------~~~~------  238 (469)
                      ...+..+++++|||+|++|+++|..|.+.                    +.+ |+               .+.+      
T Consensus       160 ~~~~~~gk~VvVIGgGnvAlD~Ar~L~~~~~~l~~tdi~~~~l~~l~~~~~~~V~iv~RRg~~~~~ft~~Elrel~~l~~  239 (491)
T PLN02852        160 PPDLKSSDTAVVLGQGNVALDCARILLRPTDELASTDIAEHALEALRGSSVRKVYLVGRRGPVQAACTAKELRELLGLKN  239 (491)
T ss_pred             hhcccCCCEEEEECCCHHHHHHHHHHHhCccccccccccHHHHHHHhhCCCCEEEEEEcCChHhCCCCHHHHHHHhccCC
Confidence            11234689999999999999999998775                    332 33               1111      


Q ss_pred             -----------------------------------HHHH---------cCcEEEcCCeEEEEEeC--CCCcEEEEEcC--
Q 012165          239 -----------------------------------LYQQ---------NGVKFVKGASIKNLEAG--SDGRVAAVKLE--  270 (469)
Q Consensus       239 -----------------------------------~l~~---------~gV~~~~~~~v~~i~~~--~~~~v~~v~~~--  270 (469)
                                                         ...+         ++|.|++...+.+|..+  +++++.++++.  
T Consensus       240 ~~~~~~~~~~~~~~~~~~~~~~~r~~~r~~~~l~~~a~~~~~~~~~~~~~v~~~f~~sP~ei~~~~~~~~~v~~l~~~~~  319 (491)
T PLN02852        240 VRVRIKEADLTLSPEDEEELKASRPKRRVYELLSKAAAAGKCAPSGGQRELHFVFFRNPTRFLDSGDGNGHVAGVKLERT  319 (491)
T ss_pred             CceeechhhhccccchhhhhccchhhHHHHHHHHHHHhhcccccCCCCceEEEEccCCCeEEEccCCCCCcEEEEEEEEe
Confidence                                               1112         57999999889999742  23567666553  


Q ss_pred             ---------------CC--CEEeCCEEEEccCCc--cCCch-h-hhcCCccc-CCCEEeCCCCCCCCCceEEeccccccC
Q 012165          271 ---------------DG--STIDADTIVIGIGAK--PTVSP-F-ERVGLNSS-VGGIQVDGQFRTRMPGIFAIGDVAAFP  328 (469)
Q Consensus       271 ---------------~g--~~i~~D~vi~a~G~~--p~~~~-~-~~~gl~~~-~g~i~Vd~~~~t~~~~Vfa~GD~a~~~  328 (469)
                                     +|  +.++||.||.++|++  |...+ + ...++..+ +|.|.+|+.++|+.|+|||+|||...|
T Consensus       320 ~l~~~~~~g~~~~~~tge~~~i~~D~Vi~aIG~~~~p~~~l~f~~~~gv~~n~~G~V~~d~~~~T~ipGvyAaGDi~~Gp  399 (491)
T PLN02852        320 VLEGAAGSGKQVAVGTGEFEDLPCGLVLKSIGYKSLPVDGLPFDHKRGVVPNVHGRVLSSASGADTEPGLYVVGWLKRGP  399 (491)
T ss_pred             ecCCCcccCCcccCCCCCEEEEECCEEEEeecCCCCCCCCCccccCcCeeECCCceEEeCCCCccCCCCEEEeeeEecCC
Confidence                           23  258999999999998  55443 2 23344433 688999988889999999999999876


Q ss_pred             Cc
Q 012165          329 LK  330 (469)
Q Consensus       329 ~~  330 (469)
                      ..
T Consensus       400 ~g  401 (491)
T PLN02852        400 TG  401 (491)
T ss_pred             CC
Confidence            54

>TIGR01372 soxA sarcosine oxidase, alpha subunit family, heterotetrameric form

Probab=99.95  E-value=7.7e-26  Score=248.10  Aligned_cols=271  Identities=15%  Similarity=0.141  Sum_probs=187.0

Q ss_pred             CCCcEEEEcCcHHHHHHHHHHHHcCCCCCcEEEEcCCCCCCCCCCCCcccccCCCCCCCCCCCCCccccCCCCCCCCHhH
Q 012165           50 ENREFVIVGGGNAAGYAARTFVEHGMADGRLCIVSKEAYAPYERPALTKGYLFPLDKKPARLPGFHTCVGSGGERQTPEW  129 (469)
Q Consensus        50 ~~~~vvIIGgG~AGl~aA~~L~~~g~~~~~V~vie~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  129 (469)
                      ..+||+|||||||||+||.+|++.|.   +|+|+|+++......       ... .   ..+++..   ...+.....+.
T Consensus       162 ~~~dVvIIGaGPAGLaAA~~aar~G~---~V~liD~~~~~GG~~-------~~~-~---~~~~g~~---~~~~~~~~~~~  224 (985)
T TIGR01372       162 AHCDVLVVGAGPAGLAAALAAARAGA---RVILVDEQPEAGGSL-------LSE-A---ETIDGKP---AADWAAATVAE  224 (985)
T ss_pred             ccCCEEEECCCHHHHHHHHHHHhCCC---cEEEEecCCCCCCee-------ecc-c---cccCCcc---HHHHHHHHHHH
Confidence            35799999999999999999999987   799999987653210       000 0   0011000   00000122233


Q ss_pred             HHHC-CcEEEeCCcEEEEeCCCcEEEeC----------C----C--eEEEeccEEeccCCCCCcCCCCCCCCcCcEEEec
Q 012165          130 YKEK-GIEMIYQDPVTSIDIEKQTLITN----------S----G--KLLKYGSLIVATGCTASRFPEKIGGYLPGVHYIR  192 (469)
Q Consensus       130 ~~~~-~i~~~~~~~v~~id~~~~~v~~~----------~----g--~~~~yd~lVlAtG~~~~~~~~~~g~~~~~v~~~~  192 (469)
                      ++.. +++++.+++|.+++.........          +    +  .++.||+||||||+.++ +++++|.+.+++++..
T Consensus       225 l~~~~~v~v~~~t~V~~i~~~~~v~~v~~~~~~~~~~~~~~~~~~~~~i~a~~VILATGa~~r-~~pipG~~~pgV~~~~  303 (985)
T TIGR01372       225 LTAMPEVTLLPRTTAFGYYDHNTVGALERVTDHLDAPPKGVPRERLWRIRAKRVVLATGAHER-PLVFANNDRPGVMLAG  303 (985)
T ss_pred             HhcCCCcEEEcCCEEEEEecCCeEEEEEEeeeccccccCCccccceEEEEcCEEEEcCCCCCc-CCCCCCCCCCCcEEch
Confidence            4444 59999988898886543211110          0    1  25899999999999987 5567888889998764


Q ss_pred             CHHHHHHHHHhhhcCCeEEEEcCChHHHHHHHHHHhCCCeEe-----------eeHHHHHHcCcEEEcCCeEEEEEeCCC
Q 012165          193 DVADADALISSLEKAKKVVVVGGGYIGMEVAAAAVGWKLDTT-----------RYEQLYQQNGVKFVKGASIKNLEAGSD  261 (469)
Q Consensus       193 ~~~~~~~~~~~~~~~~~vvVvG~G~~g~e~A~~l~~~g~~v~-----------~~~~~l~~~gV~~~~~~~v~~i~~~~~  261 (469)
                      ....... ......+++++|+|+|++++|+|..|.+.|.++.           .+.+.+++.||++++++.+.++..  +
T Consensus       304 ~~~~~l~-~~~~~~gk~VvViG~G~~g~e~A~~L~~~G~~vV~vv~~~~~~~~~l~~~L~~~GV~i~~~~~v~~i~g--~  380 (985)
T TIGR01372       304 AARTYLN-RYGVAPGKRIVVATNNDSAYRAAADLLAAGIAVVAIIDARADVSPEARAEARELGIEVLTGHVVAATEG--G  380 (985)
T ss_pred             HHHHHHH-hhCcCCCCeEEEECCCHHHHHHHHHHHHcCCceEEEEccCcchhHHHHHHHHHcCCEEEcCCeEEEEec--C
Confidence            4332211 1112367999999999999999999999996543           345668899999999999999973  3


Q ss_pred             CcEEEEEcC----CCCEEeCCEEEEccCCccCCchhhhcCCccc--C--CCEEeCCCCCCCCCceEEeccccccCCccCC
Q 012165          262 GRVAAVKLE----DGSTIDADTIVIGIGAKPTVSPFERVGLNSS--V--GGIQVDGQFRTRMPGIFAIGDVAAFPLKMYD  333 (469)
Q Consensus       262 ~~v~~v~~~----~g~~i~~D~vi~a~G~~p~~~~~~~~gl~~~--~--g~i~Vd~~~~t~~~~Vfa~GD~a~~~~~~~~  333 (469)
                      +.+..|++.    ++++++||.|+++.|++||++++..++....  .  +...    -.|+.|+||++||++...     
T Consensus       381 ~~v~~V~l~~~~g~~~~i~~D~V~va~G~~Pnt~L~~~lg~~~~~~~~~~~~~----~~t~v~gVyaaGD~~g~~-----  451 (985)
T TIGR01372       381 KRVSGVAVARNGGAGQRLEADALAVSGGWTPVVHLFSQRGGKLAWDAAIAAFL----PGDAVQGCILAGAANGLF-----  451 (985)
T ss_pred             CcEEEEEEEecCCceEEEECCEEEEcCCcCchhHHHHhcCCCeeeccccCcee----cCCCCCCeEEeeccCCcc-----
Confidence            445555554    4568999999999999999999888776532  1  1111    136789999999999643     


Q ss_pred             cccccchHHHHHHHHHHHHHHHh
Q 012165          334 RTARVEHVDHARQSAQHCIKALL  356 (469)
Q Consensus       334 ~~~~~~~~~~A~~~a~~~a~~i~  356 (469)
                            ....|..+|+.+|..++
T Consensus       452 ------~~~~A~~eG~~Aa~~i~  468 (985)
T TIGR01372       452 ------GLAAALADGAAAGAAAA  468 (985)
T ss_pred             ------CHHHHHHHHHHHHHHHH
Confidence                  33457778888877764

This model describes the alpha subunit of a family of known and putative heterotetrameric sarcosine oxidases. Five operons of such oxidases are found in Mesorhizobium loti and three in Agrobacterium tumefaciens, a high enough copy number to suggest that not all members are share the same function. The model is designated as subfamily rather than equivalog for this reason.Sarcosine oxidase catalyzes the oxidative demethylation of sarcosine to glycine. The reaction converts tetrahydrofolate to 5,10-methylene-tetrahydrofolate. The enzyme is known in monomeric and heterotetrameric (alpha,beta,gamma,delta) forms

>COG0493 GltD NADPH-dependent glutamate synthase beta chain and related oxidoreductases [Amino acid transport and metabolism / General function prediction only]

Probab=99.94  E-value=1.2e-26  Score=230.74  Aligned_cols=318  Identities=23%  Similarity=0.218  Sum_probs=224.2

Q ss_pred             ccccccccccccccccC--CCCcccccc--cCCcccccccccccc---------cccCCCCCCcEEEEcCcHHHHHHHHH
Q 012165            3 SVSNSLSFKHGLSLWCP--QSPSLHRIR--HSSAKNFQRRGFVVA---------YSSFANENREFVIVGGGNAAGYAART   69 (469)
Q Consensus         3 ~~~~~~~~~~~~~~~~~--~~~~~~~~~--~~~~~~~~~~~~~~~---------~~~~~~~~~~vvIIGgG~AGl~aA~~   69 (469)
                      ..+|+||.+|||+|+.+  |+..|.+..  .++++..+.+.+.+.         .++.....++|.|||+|||||++|..
T Consensus        62 ~~tn~~p~~~gRvcp~~~~ceg~cv~~~~~~~v~i~~le~~i~d~~~~~g~i~~~~~~~~tg~~VaviGaGPAGl~~a~~  141 (457)
T COG0493          62 HKTNNLPAITGRVCPLGNLCEGACVLGIEELPVNIGALERAIGDKADREGWIPGELPGSRTGKKVAVIGAGPAGLAAADD  141 (457)
T ss_pred             HHhCCCccccCccCCCCCceeeeeeeccCCCchhhhhHHHHHhhHHHHhCCCCCCCCCCCCCCEEEEECCCchHhhhHHH
Confidence            46899999999999988  999999974  888998888776652         12234456899999999999999999


Q ss_pred             HHHcCCCCCcEEEEcCCCCCCCCCCCCcccccCCCCCCCCCCCCCccccCCCCCCCCHhHHHHCCcEEEeCCcEEEEeCC
Q 012165           70 FVEHGMADGRLCIVSKEAYAPYERPALTKGYLFPLDKKPARLPGFHTCVGSGGERQTPEWYKEKGIEMIYQDPVTSIDIE  149 (469)
Q Consensus        70 L~~~g~~~~~V~vie~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~v~~id~~  149 (469)
                      |.+.|+   .||++|+.+.....    .. |-.+..+...++           ..+..+.+++.|++|+.++++-     
T Consensus       142 L~~~G~---~Vtv~e~~~~~GGl----l~-yGIP~~kl~k~i-----------~d~~i~~l~~~Gv~~~~~~~vG-----  197 (457)
T COG0493         142 LSRAGH---DVTVFERVALDGGL----LL-YGIPDFKLPKDI-----------LDRRLELLERSGVEFKLNVRVG-----  197 (457)
T ss_pred             HHhCCC---eEEEeCCcCCCcee----EE-ecCchhhccchH-----------HHHHHHHHHHcCeEEEEcceEC-----
Confidence            999998   79999988765311    00 111111111111           2355678889999999986652     


Q ss_pred             CcEEEeCCCeEEEeccEEeccCCCCCcCCCCCCCCcCcEEEecCHHHHHHHHHhh---------hcCCeEEEEcCChHHH
Q 012165          150 KQTLITNSGKLLKYGSLIVATGCTASRFPEKIGGYLPGVHYIRDVADADALISSL---------EKAKKVVVVGGGYIGM  220 (469)
Q Consensus       150 ~~~v~~~~g~~~~yd~lVlAtG~~~~~~~~~~g~~~~~v~~~~~~~~~~~~~~~~---------~~~~~vvVvG~G~~g~  220 (469)
                       +.++++.- .-+||++++|||+.-.+.-.++|.+.++++...++..........         ..+++++|||+|.+++
T Consensus       198 -~~it~~~L-~~e~Dav~l~~G~~~~~~l~i~g~d~~gv~~A~dfL~~~~~~~~~~~~~~~~~~~~gk~vvVIGgG~Ta~  275 (457)
T COG0493         198 -RDITLEEL-LKEYDAVFLATGAGKPRPLDIPGEDAKGVAFALDFLTRLNKEVLGDFAEDRTPPAKGKRVVVIGGGDTAM  275 (457)
T ss_pred             -CcCCHHHH-HHhhCEEEEeccccCCCCCCCCCcCCCcchHHHHHHHHHHHHHhcccccccCCCCCCCeEEEECCCCCHH
Confidence             22222211 136799999999764445567787788876554333222111111         1238999999999999


Q ss_pred             HHHHHHHhCCCe-Ee--------------------eeHHHHHHcCcEEEcCCeEEEEEeCCCCcEEEEEcCC--------
Q 012165          221 EVAAAAVGWKLD-TT--------------------RYEQLYQQNGVKFVKGASIKNLEAGSDGRVAAVKLED--------  271 (469)
Q Consensus       221 e~A~~l~~~g~~-v~--------------------~~~~~l~~~gV~~~~~~~v~~i~~~~~~~v~~v~~~~--------  271 (469)
                      +++....++|.+ ++                    ...+...+.|+...+.....++..+++|++..+.+..        
T Consensus       276 D~~~t~~r~Ga~~v~~~~~~~~~~~~~~~~~~~~~~~~~~a~eeg~~~~~~~~~~~~~~~e~GrV~~~~~~~~~~~~~~~  355 (457)
T COG0493         276 DCAGTALRLGAKSVTCFYREDRDDETNEWPTWAAQLEVRSAGEEGVERLPFVQPKAFIGNEGGRVTGVKFGRVEPGEYVD  355 (457)
T ss_pred             HHHHHHhhcCCeEEEEeccccccccCCcccccchhhhhhhhhhcCCcccccCCceeEeecCCCcEeeeecccccccCccc
Confidence            999998888873 33                    2345566788999998888898877788877654311        


Q ss_pred             -----------C--CEEeCCEEEEccCCccCCchh--hhcCCccc-CCCEEeCCCC-CCCCCceEEeccccccCCccCCc
Q 012165          272 -----------G--STIDADTIVIGIGAKPTVSPF--ERVGLNSS-VGGIQVDGQF-RTRMPGIFAIGDVAAFPLKMYDR  334 (469)
Q Consensus       272 -----------g--~~i~~D~vi~a~G~~p~~~~~--~~~gl~~~-~g~i~Vd~~~-~t~~~~Vfa~GD~a~~~~~~~~~  334 (469)
                                 |  ..+++|.|+.++|+.++....  ...++..+ +|.+.+|+.+ +|+.|++||.||+.....     
T Consensus       356 ~~~r~~p~~v~gs~~~~~aD~v~~aig~~~~~~~~~~~~~~~~~~~~g~i~~~~~~~~ts~~~vfa~gD~~~g~~-----  430 (457)
T COG0493         356 GWGRRGPVGVIGTEKTDAADTVILAIGFEGDATDGLLLEFGLKLDKRGRIKVDENLQQTSIPGVFAGGDAVRGAA-----  430 (457)
T ss_pred             ccccccCccccCceEEehHHHHHHHhccCCCcccccccccccccCCCCceecccccccccCCCeeeCceeccchh-----
Confidence                       2  257899999999998874431  22245544 5889999987 999999999999998532     


Q ss_pred             ccccchHHHHHHHHHHHHHHHh
Q 012165          335 TARVEHVDHARQSAQHCIKALL  356 (469)
Q Consensus       335 ~~~~~~~~~A~~~a~~~a~~i~  356 (469)
                           .+..|+.+|+.+|+.|.
T Consensus       431 -----~vv~ai~eGr~aak~i~  447 (457)
T COG0493         431 -----LVVWAIAEGREAAKAID  447 (457)
T ss_pred             -----hhhhHHhhchHHHHhhh
Confidence                 33457788888877664

>KOG0399 consensus Glutamate synthase [Amino acid transport and metabolism]

Probab=99.94  E-value=1.5e-26  Score=236.37  Aligned_cols=299  Identities=18%  Similarity=0.259  Sum_probs=195.3

Q ss_pred             cccccccccccccccCCCCcccccc--cCCccccccccccc---------ccccCCCCCCcEEEEcCcHHHHHHHHHHHH
Q 012165            4 VSNSLSFKHGLSLWCPQSPSLHRIR--HSSAKNFQRRGFVV---------AYSSFANENREFVIVGGGNAAGYAARTFVE   72 (469)
Q Consensus         4 ~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~---------~~~~~~~~~~~vvIIGgG~AGl~aA~~L~~   72 (469)
                      ++|.||..+||+||+||+.+|....  .++.+.++++.+.+         ..+|.....++|.|||+|||||+||-.|-+
T Consensus      1727 ~tnnfpeftgrvcpapcegactlgiie~pv~iksie~aiid~af~egwm~p~pp~~rtg~~vaiigsgpaglaaadqlnk 1806 (2142)
T KOG0399|consen 1727 ETNNFPEFTGRVCPAPCEGACTLGIIEPPVGIKSIECAIIDKAFEEGWMKPCPPAFRTGKRVAIIGSGPAGLAAADQLNK 1806 (2142)
T ss_pred             hhCCCccccCccCCCCcCcceeeecccCCccccchhhHHHHHHHHhcCCccCCcccccCcEEEEEccCchhhhHHHHHhh
Confidence            6899999999999999999998866  77777777765443         334556678999999999999999999999


Q ss_pred             cCCCCCcEEEEcCCCCCCCCCCCCcccccCCCCCCCCCCCCCccccCCCCCCCCHhHHHHCCcEEEeCCcEEEEeCCCcE
Q 012165           73 HGMADGRLCIVSKEAYAPYERPALTKGYLFPLDKKPARLPGFHTCVGSGGERQTPEWYKEKGIEMIYQDPVTSIDIEKQT  152 (469)
Q Consensus        73 ~g~~~~~V~vie~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~v~~id~~~~~  152 (469)
                      .|+   .|+|.|+.+..+.-       +.++  .....+..+       ..++..+.+.+.||+|+.++++      ++.
T Consensus      1807 ~gh---~v~vyer~dr~ggl-------l~yg--ipnmkldk~-------vv~rrv~ll~~egi~f~tn~ei------gk~ 1861 (2142)
T KOG0399|consen 1807 AGH---TVTVYERSDRVGGL-------LMYG--IPNMKLDKF-------VVQRRVDLLEQEGIRFVTNTEI------GKH 1861 (2142)
T ss_pred             cCc---EEEEEEecCCcCce-------eeec--CCccchhHH-------HHHHHHHHHHhhCceEEeeccc------ccc
Confidence            998   79999988765311       1111  111111100       0234457788899999998765      233


Q ss_pred             EEeCCCeEEEeccEEeccCCC-CCcCCCCCCCCcCcEEEecCHHHHH--HHHH-------hhhcCCeEEEEcCChHHHHH
Q 012165          153 LITNSGKLLKYGSLIVATGCT-ASRFPEKIGGYLPGVHYIRDVADAD--ALIS-------SLEKAKKVVVVGGGYIGMEV  222 (469)
Q Consensus       153 v~~~~g~~~~yd~lVlAtG~~-~~~~~~~~g~~~~~v~~~~~~~~~~--~~~~-------~~~~~~~vvVvG~G~~g~e~  222 (469)
                      +.+ |+-.-++|.+|+|+|+. |+.+ +++|.++.|+++.-.+....  .+..       ...++|+|+|||||.+|-++
T Consensus      1862 vs~-d~l~~~~daiv~a~gst~prdl-pv~grd~kgv~fame~l~~ntk~lld~~~d~~~~~~~gkkvivigggdtg~dc 1939 (2142)
T KOG0399|consen 1862 VSL-DELKKENDAIVLATGSTTPRDL-PVPGRDLKGVHFAMEFLEKNTKSLLDSVLDGNYISAKGKKVIVIGGGDTGTDC 1939 (2142)
T ss_pred             ccH-HHHhhccCeEEEEeCCCCCcCC-CCCCccccccHHHHHHHHHhHHhhhccccccceeccCCCeEEEECCCCccccc
Confidence            333 22234789999999986 5444 46888888886543322211  1111       01367999999999999999


Q ss_pred             HHHHHhCCCeEe--------------------------e----eHHHHHHcCcEEEcCC-eEEEEEeCCCCcEEEE----
Q 012165          223 AAAAVGWKLDTT--------------------------R----YEQLYQQNGVKFVKGA-SIKNLEAGSDGRVAAV----  267 (469)
Q Consensus       223 A~~l~~~g~~v~--------------------------~----~~~~l~~~gV~~~~~~-~v~~i~~~~~~~v~~v----  267 (469)
                      ...-.++|++..                          +    -.+.-+..|-..++-+ -.+++..+++|.+.++    
T Consensus      1940 igtsvrhg~~sv~n~ellp~pp~~ra~~npwpqwprvfrvdygh~e~~~~~g~dpr~y~vltk~f~~~~~g~v~gl~~vr 2019 (2142)
T KOG0399|consen 1940 IGTSVRHGCKSVGNFELLPQPPPERAPDNPWPQWPRVFRVDYGHAEAKEHYGSDPRTYSVLTKRFIGDDNGNVTGLETVR 2019 (2142)
T ss_pred             cccchhhccceecceeecCCCCcccCCCCCCccCceEEEeecchHHHHHHhCCCcceeeeeeeeeeccCCCceeeEEEEE
Confidence            888777776543                          0    0111112222211110 1122222333333222    


Q ss_pred             --------------EcCC-CCEEeCCEEEEccCCc-cCCchhhhcCCccc-CCCEEe-CCCCCCCCCceEEeccccccCC
Q 012165          268 --------------KLED-GSTIDADTIVIGIGAK-PTVSPFERVGLNSS-VGGIQV-DGQFRTRMPGIFAIGDVAAFPL  329 (469)
Q Consensus       268 --------------~~~~-g~~i~~D~vi~a~G~~-p~~~~~~~~gl~~~-~g~i~V-d~~~~t~~~~Vfa~GD~a~~~~  329 (469)
                                    +..+ .+.++||+||+|.|+. |.....++++++.+ ++.|.+ ++.+.|.++.|||+|||.....
T Consensus      2020 vew~k~~~g~w~~~ei~~see~~eadlv~lamgf~gpe~~~~~~~~~~~d~rsni~t~~~~y~t~v~~vfaagdcrrgqs 2099 (2142)
T KOG0399|consen 2020 VEWEKDDKGRWQMKEINNSEEIIEADLVILAMGFVGPEKSVIEQLNLKTDPRSNILTPKDSYSTDVAKVFAAGDCRRGQS 2099 (2142)
T ss_pred             EEEEecCCCceEEEEcCCcceeeecceeeeeccccCcchhhhhhcCcccCccccccCCCccccccccceeecccccCCce
Confidence                          2222 2468999999999997 55456788888877 455665 4568899999999999998644

>KOG4716 consensus Thioredoxin reductase [Posttranslational modification, protein turnover, chaperones]

Probab=99.93  E-value=7.6e-25  Score=199.61  Aligned_cols=197  Identities=27%  Similarity=0.450  Sum_probs=150.8

Q ss_pred             EeCCC--eEEEeccEEeccCCCCCcCCCCCCCCcCcEEEecCHHHHHHHHHhhhcCCeEEEEcCChHHHHHHHHHHhCCC
Q 012165          154 ITNSG--KLLKYGSLIVATGCTASRFPEKIGGYLPGVHYIRDVADADALISSLEKAKKVVVVGGGYIGMEVAAAAVGWKL  231 (469)
Q Consensus       154 ~~~~g--~~~~yd~lVlAtG~~~~~~~~~~g~~~~~v~~~~~~~~~~~~~~~~~~~~~vvVvG~G~~g~e~A~~l~~~g~  231 (469)
                      +..+|  +.+.++.+|||||.+|+ .|.+||...-++       .++.+......+.+.+|||+|++++|+|..|+.+|.
T Consensus       151 t~~~gk~~~~ta~~fvIatG~RPr-Yp~IpG~~Ey~I-------TSDDlFsl~~~PGkTLvVGa~YVaLECAgFL~gfg~  222 (503)
T KOG4716|consen  151 TNKKGKERFLTAENFVIATGLRPR-YPDIPGAKEYGI-------TSDDLFSLPYEPGKTLVVGAGYVALECAGFLKGFGY  222 (503)
T ss_pred             ecCCCceEEeecceEEEEecCCCC-CCCCCCceeeee-------cccccccccCCCCceEEEccceeeeehhhhHhhcCC
Confidence            33444  35899999999999998 576666322221       244555555567778899999999999999999999


Q ss_pred             eEe-----------------eeHHHHHHcCcEEEcCCeEEEEEeCCCCcEEEEEcCC---C--CEEeCCEEEEccCCccC
Q 012165          232 DTT-----------------RYEQLYQQNGVKFVKGASIKNLEAGSDGRVAAVKLED---G--STIDADTIVIGIGAKPT  289 (469)
Q Consensus       232 ~v~-----------------~~~~~l~~~gV~~~~~~~v~~i~~~~~~~v~~v~~~~---g--~~i~~D~vi~a~G~~p~  289 (469)
                      +++                 .+.+.+++.||+|.....+.+++..++++. .|...+   +  -+-++|.|+||+|+.+.
T Consensus       223 ~vtVmVRSI~LrGFDqdmae~v~~~m~~~Gikf~~~~vp~~Veq~~~g~l-~v~~k~t~t~~~~~~~ydTVl~AiGR~~~  301 (503)
T KOG4716|consen  223 DVTVMVRSILLRGFDQDMAELVAEHMEERGIKFLRKTVPERVEQIDDGKL-RVFYKNTNTGEEGEEEYDTVLWAIGRKAL  301 (503)
T ss_pred             CcEEEEEEeecccccHHHHHHHHHHHHHhCCceeecccceeeeeccCCcE-EEEeecccccccccchhhhhhhhhccccc
Confidence            988                 567889999999999988888887767764 333322   2  24679999999999998


Q ss_pred             Cch--hhhcCCccc--CCCEEeCCCCCCCCCceEEeccccccCCccCCcccccchHHHHHHHHHHHHHHHhcCCC--CCC
Q 012165          290 VSP--FERVGLNSS--VGGIQVDGQFRTRMPGIFAIGDVAAFPLKMYDRTARVEHVDHARQSAQHCIKALLSAQT--HTY  363 (469)
Q Consensus       290 ~~~--~~~~gl~~~--~g~i~Vd~~~~t~~~~Vfa~GD~a~~~~~~~~~~~~~~~~~~A~~~a~~~a~~i~~~~~--~~~  363 (469)
                      ++-  |+..|+..+  .|.|.||+.-+|++|+|||+||+....         .+.-+.|++.|+.+|+.|.++..  ..|
T Consensus       302 ~~~l~L~~~GVk~n~ks~KI~v~~~e~t~vp~vyAvGDIl~~k---------pELTPvAIqsGrlLa~Rlf~gs~q~~dy  372 (503)
T KOG4716|consen  302 TDDLNLDNAGVKTNEKSGKIPVDDEEATNVPYVYAVGDILEDK---------PELTPVAIQSGRLLARRLFAGSTQLMDY  372 (503)
T ss_pred             hhhcCCCccceeecccCCccccChHHhcCCCceEEecceecCC---------cccchhhhhhchHHHHHHhcCcceeeec
Confidence            764  678888774  578999999999999999999998743         23445699999999999987653  356


Q ss_pred             CCCCc
Q 012165          364 DYLPY  368 (469)
Q Consensus       364 ~~~p~  368 (469)
                      ..+|.
T Consensus       373 ~~V~T  377 (503)
T KOG4716|consen  373 DDVAT  377 (503)
T ss_pred             cCCce
Confidence            65653

>COG3634 AhpF Alkyl hydroperoxide reductase, large subunit [Posttranslational modification, protein turnover, chaperones]

Probab=99.93  E-value=2e-25  Score=204.04  Aligned_cols=259  Identities=22%  Similarity=0.326  Sum_probs=183.6

Q ss_pred             CCCCcEEEEcCcHHHHHHHHHHHHcCCCCCcEEEEcCCCCCCCCCCCCcccccCCCCCCCCCCCCCccccCCCCCCCCHh
Q 012165           49 NENREFVIVGGGNAAGYAARTFVEHGMADGRLCIVSKEAYAPYERPALTKGYLFPLDKKPARLPGFHTCVGSGGERQTPE  128 (469)
Q Consensus        49 ~~~~~vvIIGgG~AGl~aA~~L~~~g~~~~~V~vie~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  128 (469)
                      ...|||+||||||||.+||.+.+|+|...+  .+-|+-   +.+       .+..  ...+++-......+..+...+.+
T Consensus       209 k~~yDVLvVGgGPAgaaAAiYaARKGiRTG--l~aerf---GGQ-------vldT--~~IENfIsv~~teGpkl~~ale~  274 (520)
T COG3634         209 KDAYDVLVVGGGPAGAAAAIYAARKGIRTG--LVAERF---GGQ-------VLDT--MGIENFISVPETEGPKLAAALEA  274 (520)
T ss_pred             cCCceEEEEcCCcchhHHHHHHHhhcchhh--hhhhhh---CCe-------eccc--cchhheeccccccchHHHHHHHH
Confidence            356999999999999999999999997311  111111   000       0000  00001100001111111223455


Q ss_pred             HHHHCCcEEEeCCcEEEEeCC-----CcEEEeCCCeEEEeccEEeccCCCCCcCCCCCCCC---cCcEEEecCHHHHHHH
Q 012165          129 WYKEKGIEMIYQDPVTSIDIE-----KQTLITNSGKLLKYGSLIVATGCTASRFPEKIGGY---LPGVHYIRDVADADAL  200 (469)
Q Consensus       129 ~~~~~~i~~~~~~~v~~id~~-----~~~v~~~~g~~~~yd~lVlAtG~~~~~~~~~~g~~---~~~v~~~~~~~~~~~~  200 (469)
                      ..+++.+++....+++++.+.     -..|++++|..+..+.+|||||++++.+ .+||++   -+|+.|+..      +
T Consensus       275 Hv~~Y~vDimn~qra~~l~~a~~~~~l~ev~l~nGavLkaktvIlstGArWRn~-nvPGE~e~rnKGVayCPH------C  347 (520)
T COG3634         275 HVKQYDVDVMNLQRASKLEPAAVEGGLIEVELANGAVLKARTVILATGARWRNM-NVPGEDEYRNKGVAYCPH------C  347 (520)
T ss_pred             HHhhcCchhhhhhhhhcceecCCCCccEEEEecCCceeccceEEEecCcchhcC-CCCchHHHhhCCeeeCCC------C
Confidence            677888887766677777763     2489999999999999999999999865 456653   367776642      2


Q ss_pred             HHhhhcCCeEEEEcCChHHHHHHHHHHhCCCeEe------------eeHHHH-HHcCcEEEcCCeEEEEEeCCCCcEEEE
Q 012165          201 ISSLEKAKKVVVVGGGYIGMEVAAAAVGWKLDTT------------RYEQLY-QQNGVKFVKGASIKNLEAGSDGRVAAV  267 (469)
Q Consensus       201 ~~~~~~~~~vvVvG~G~~g~e~A~~l~~~g~~v~------------~~~~~l-~~~gV~~~~~~~v~~i~~~~~~~v~~v  267 (469)
                      ...+.++|+|+|||||.+|+|.|-.|+..-.+|+            .+++.+ .-.+|+++++...++|..+ ..+|.++
T Consensus       348 DGPLF~gK~VAVIGGGNSGvEAAIDLAGiv~hVtllEF~~eLkAD~VLq~kl~sl~Nv~ii~na~Ttei~Gd-g~kV~Gl  426 (520)
T COG3634         348 DGPLFKGKRVAVIGGGNSGVEAAIDLAGIVEHVTLLEFAPELKADAVLQDKLRSLPNVTIITNAQTTEVKGD-GDKVTGL  426 (520)
T ss_pred             CCcccCCceEEEECCCcchHHHHHhHHhhhheeeeeecchhhhhHHHHHHHHhcCCCcEEEecceeeEEecC-Cceecce
Confidence            2346789999999999999999999998887887            223333 3469999999999999843 3456666


Q ss_pred             EcCC---C--CEEeCCEEEEccCCccCCchhhhcCCccc-CCCEEeCCCCCCCCCceEEeccccccCCc
Q 012165          268 KLED---G--STIDADTIVIGIGAKPTVSPFERVGLNSS-VGGIQVDGQFRTRMPGIFAIGDVAAFPLK  330 (469)
Q Consensus       268 ~~~~---g--~~i~~D~vi~a~G~~p~~~~~~~~gl~~~-~g~i~Vd~~~~t~~~~Vfa~GD~a~~~~~  330 (469)
                      ...+   |  ..++-+-|++-+|..||++||+.. ++.+ +|-|.||.+..||+|+|||+|||+..+..
T Consensus       427 ~Y~dr~sge~~~l~LeGvFVqIGL~PNT~WLkg~-vel~~rGEIivD~~g~TsvpGvFAAGD~T~~~yK  494 (520)
T COG3634         427 EYRDRVSGEEHHLELEGVFVQIGLLPNTEWLKGA-VELNRRGEIIVDARGETNVPGVFAAGDCTTVPYK  494 (520)
T ss_pred             EEEeccCCceeEEEeeeeEEEEecccChhHhhch-hhcCcCccEEEecCCCcCCCceeecCcccCCccc
Confidence            5543   3  357788899999999999999987 5554 68899999999999999999999987764

>KOG0404 consensus Thioredoxin reductase [Posttranslational modification, protein turnover, chaperones]

Probab=99.92  E-value=1e-24  Score=187.85  Aligned_cols=262  Identities=21%  Similarity=0.290  Sum_probs=185.0

Q ss_pred             CCcEEEEcCcHHHHHHHHHHHHcCCCCCcEEEEcCCCCCCCCCCCCc-ccccCCCCCCCCCCCCCc-cccCCCCCCCCHh
Q 012165           51 NREFVIVGGGNAAGYAARTFVEHGMADGRLCIVSKEAYAPYERPALT-KGYLFPLDKKPARLPGFH-TCVGSGGERQTPE  128 (469)
Q Consensus        51 ~~~vvIIGgG~AGl~aA~~L~~~g~~~~~V~vie~~~~~~~~~~~l~-~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~  128 (469)
                      +.+|+|||+|||+.+||+++.+.-.   +-+|+|.--.     .... .+.+ ......+++|+|. .+.+.+..++..+
T Consensus         8 ~e~v~IiGSGPAa~tAAiYaarael---kPllfEG~~~-----~~i~pGGQL-tTTT~veNfPGFPdgi~G~~l~d~mrk   78 (322)
T KOG0404|consen    8 NENVVIIGSGPAAHTAAIYAARAEL---KPLLFEGMMA-----NGIAPGGQL-TTTTDVENFPGFPDGITGPELMDKMRK   78 (322)
T ss_pred             eeeEEEEccCchHHHHHHHHhhccc---CceEEeeeec-----cCcCCCcee-eeeeccccCCCCCcccccHHHHHHHHH
Confidence            4589999999999999999999865   5677764321     1111 1111 1234466788886 3556666666777


Q ss_pred             HHHHCCcEEEeCCcEEEEeCCCc--EEEeCCCeEEEeccEEeccCCCCCcCCCCCCCCcCcEEEecCHHHHHHHHH--hh
Q 012165          129 WYKEKGIEMIYQDPVTSIDIEKQ--TLITNSGKLLKYGSLIVATGCTASRFPEKIGGYLPGVHYIRDVADADALIS--SL  204 (469)
Q Consensus       129 ~~~~~~i~~~~~~~v~~id~~~~--~v~~~~g~~~~yd~lVlAtG~~~~~~~~~~g~~~~~v~~~~~~~~~~~~~~--~~  204 (469)
                      +..+.|.+++. .+|.++|...+  .+.+ +.+.+.+|.+|+|||+..+++. .||. .++.+.-+.+..+.-+..  .+
T Consensus        79 qs~r~Gt~i~t-EtVskv~~sskpF~l~t-d~~~v~~~avI~atGAsAkRl~-~pg~-ge~~fWqrGiSaCAVCDGaapi  154 (322)
T KOG0404|consen   79 QSERFGTEIIT-ETVSKVDLSSKPFKLWT-DARPVTADAVILATGASAKRLH-LPGE-GEGEFWQRGISACAVCDGAAPI  154 (322)
T ss_pred             HHHhhcceeee-eehhhccccCCCeEEEe-cCCceeeeeEEEecccceeeee-cCCC-CcchHHhcccchhhcccCcchh
Confidence            77888999888 48898988765  5555 4456899999999999887654 2343 122222232222322222  23


Q ss_pred             hcCCeEEEEcCChHHHHHHHHHHhCCCeEe-------------eeHHHHHHcCcEEEcCCeEEEEEeCCCCcEEEE----
Q 012165          205 EKAKKVVVVGGGYIGMEVAAAAVGWKLDTT-------------RYEQLYQQNGVKFVKGASIKNLEAGSDGRVAAV----  267 (469)
Q Consensus       205 ~~~~~vvVvG~G~~g~e~A~~l~~~g~~v~-------------~~~~~l~~~gV~~~~~~~v~~i~~~~~~~v~~v----  267 (469)
                      .+.|..+|||||.+++|-|.+|.+++.+|.             +.++..+..+|++++++.+.+...+ .+.+..+    
T Consensus       155 frnk~laVIGGGDsA~EEA~fLtkyaskVyii~Rrd~fRAs~~Mq~ra~~npnI~v~~nt~~~ea~gd-~~~l~~l~ikn  233 (322)
T KOG0404|consen  155 FRNKPLAVIGGGDSAMEEALFLTKYASKVYIIHRRDHFRASKIMQQRAEKNPNIEVLYNTVAVEALGD-GKLLNGLRIKN  233 (322)
T ss_pred             hcCCeeEEEcCcHHHHHHHHHHHhhccEEEEEEEhhhhhHHHHHHHHHhcCCCeEEEechhhhhhccC-cccccceEEEe
Confidence            578899999999999999999999999987             3345566679999999877776532 2222233    


Q ss_pred             -EcCCCCEEeCCEEEEccCCccCCchhhhcCCccc-CCCEEeC-CCCCCCCCceEEecccccc
Q 012165          268 -KLEDGSTIDADTIVIGIGAKPTVSPFERVGLNSS-VGGIQVD-GQFRTRMPGIFAIGDVAAF  327 (469)
Q Consensus       268 -~~~~g~~i~~D~vi~a~G~~p~~~~~~~~gl~~~-~g~i~Vd-~~~~t~~~~Vfa~GD~a~~  327 (469)
                       ...+-+.++.+-+++++|..|++.++++ .++.| +|+|++- ..-.||+|++||+||+...
T Consensus       234 ~~tge~~dl~v~GlFf~IGH~Pat~~l~g-qve~d~~GYi~t~pgts~TsvpG~FAAGDVqD~  295 (322)
T KOG0404|consen  234 VKTGEETDLPVSGLFFAIGHSPATKFLKG-QVELDEDGYIVTRPGTSLTSVPGVFAAGDVQDK  295 (322)
T ss_pred             cccCcccccccceeEEEecCCchhhHhcC-ceeeccCceEEeccCcccccccceeeccccchH
Confidence             3333457999999999999999999987 56665 5778876 5677999999999999863

>PLN02172 flavin-containing monooxygenase FMO GS-OX

Probab=99.91  E-value=5.3e-23  Score=207.46  Aligned_cols=280  Identities=18%  Similarity=0.190  Sum_probs=175.1

Q ss_pred             CCCCcEEEEcCcHHHHHHHHHHHHcCCCCCcEEEEcCCCCCC----CCCCCC---------------cccc---cCCCCC
Q 012165           49 NENREFVIVGGGNAAGYAARTFVEHGMADGRLCIVSKEAYAP----YERPAL---------------TKGY---LFPLDK  106 (469)
Q Consensus        49 ~~~~~vvIIGgG~AGl~aA~~L~~~g~~~~~V~vie~~~~~~----~~~~~l---------------~~~~---~~~~~~  106 (469)
                      .+.++|+|||||+|||+||++|++.|+   +++++|+++..+    |. +..               +..|   .....+
T Consensus         8 ~~~~~VaIIGAG~aGL~aA~~l~~~G~---~v~vfE~~~~vGG~W~~~-~~~~~d~~~~~~~~~~~~s~~Y~~L~tn~p~   83 (461)
T PLN02172          8 INSQHVAVIGAGAAGLVAARELRREGH---TVVVFEREKQVGGLWVYT-PKSESDPLSLDPTRSIVHSSVYESLRTNLPR   83 (461)
T ss_pred             CCCCCEEEECCcHHHHHHHHHHHhcCC---eEEEEecCCCCcceeecC-CCcCCCccccCCCCcccchhhhhhhhccCCH
Confidence            446899999999999999999999987   799999987654    21 100               0000   000000


Q ss_pred             CC---CCCCCCccc-----------cCCCCCCCCHhHHHHCCcE--EEeCCcEEEEeCCCc--EEEeCCC--e--EEEec
Q 012165          107 KP---ARLPGFHTC-----------VGSGGERQTPEWYKEKGIE--MIYQDPVTSIDIEKQ--TLITNSG--K--LLKYG  164 (469)
Q Consensus       107 ~~---~~~~~~~~~-----------~~~~~~~~~~~~~~~~~i~--~~~~~~v~~id~~~~--~v~~~~g--~--~~~yd  164 (469)
                      ..   .++|.....           ...+....+.++.++.++.  ++++++|+.+++.+.  +|++.++  .  +..||
T Consensus        84 ~~m~f~dfp~~~~~~~~~~~~~~fp~~~ev~~YL~~~a~~fgl~~~I~~~t~V~~V~~~~~~w~V~~~~~~~~~~~~~~d  163 (461)
T PLN02172         84 ECMGYRDFPFVPRFDDESRDSRRYPSHREVLAYLQDFAREFKIEEMVRFETEVVRVEPVDGKWRVQSKNSGGFSKDEIFD  163 (461)
T ss_pred             hhccCCCCCCCcccccccCcCCCCCCHHHHHHHHHHHHHHcCCcceEEecCEEEEEeecCCeEEEEEEcCCCceEEEEcC
Confidence            00   011111000           0011112233445567877  788999999988654  4555432  2  46799


Q ss_pred             cEEeccC--CCCCcCCCCCCC-CcCcE-EEecCHHHHHHHHHhhhcCCeEEEEcCChHHHHHHHHHHhCCCeEeeeHH--
Q 012165          165 SLIVATG--CTASRFPEKIGG-YLPGV-HYIRDVADADALISSLEKAKKVVVVGGGYIGMEVAAAAVGWKLDTTRYEQ--  238 (469)
Q Consensus       165 ~lVlAtG--~~~~~~~~~~g~-~~~~v-~~~~~~~~~~~~~~~~~~~~~vvVvG~G~~g~e~A~~l~~~g~~v~~~~~--  238 (469)
                      +||+|||  +.|+ .|.++|. ..+|. .+..++.+.+     ...+|+|+|||+|.+|+|+|..|...+.+|+...+  
T Consensus       164 ~VIvAtG~~~~P~-~P~ipG~~~f~G~~iHs~~yr~~~-----~~~gk~VvVVG~G~Sg~diA~~L~~~a~~V~l~~r~~  237 (461)
T PLN02172        164 AVVVCNGHYTEPN-VAHIPGIKSWPGKQIHSHNYRVPD-----PFKNEVVVVIGNFASGADISRDIAKVAKEVHIASRAS  237 (461)
T ss_pred             EEEEeccCCCCCc-CCCCCCcccCCceEEEecccCCcc-----ccCCCEEEEECCCcCHHHHHHHHHHhCCeEEEEEeec
Confidence            9999999  5665 5666764 24442 1111111111     23789999999999999999999999988872111  


Q ss_pred             ------HHHHcCcEEEcCCeEEEEEeCCCCcEEEEEcCCCCEEeCCEEEEccCCccCCchhhhcCCcccCCCEEeCCCC-
Q 012165          239 ------LYQQNGVKFVKGASIKNLEAGSDGRVAAVKLEDGSTIDADTIVIGIGAKPTVSPFERVGLNSSVGGIQVDGQF-  311 (469)
Q Consensus       239 ------~l~~~gV~~~~~~~v~~i~~~~~~~v~~v~~~~g~~i~~D~vi~a~G~~p~~~~~~~~gl~~~~g~i~Vd~~~-  311 (469)
                            .+......+..+..|..+..  ++   .|+++||+.+++|.||+|||++++.+||+..+      .+.+|++. 
T Consensus       238 ~~~~~~~~~~~~~~v~~~~~I~~~~~--~g---~V~f~DG~~~~~D~Ii~~TGy~~~~pfL~~~~------~i~v~~~~v  306 (461)
T PLN02172        238 ESDTYEKLPVPQNNLWMHSEIDTAHE--DG---SIVFKNGKVVYADTIVHCTGYKYHFPFLETNG------YMRIDENRV  306 (461)
T ss_pred             cccccccCcCCCCceEECCcccceec--CC---eEEECCCCCccCCEEEECCcCCccccccCccc------ceeeCCCcc
Confidence                  11122234555556666552  33   47899999999999999999999999987532      34444321 


Q ss_pred             -----C---CC-CCceEEeccccccCCccCCcccccchHHHHHHHHHHHHHHHhcCCC
Q 012165          312 -----R---TR-MPGIFAIGDVAAFPLKMYDRTARVEHVDHARQSAQHCIKALLSAQT  360 (469)
Q Consensus       312 -----~---t~-~~~Vfa~GD~a~~~~~~~~~~~~~~~~~~A~~~a~~~a~~i~~~~~  360 (469)
                           .   .. .|+++.+|=...           ...+.....||+.+|+.+.|...
T Consensus       307 ~~Ly~~~f~~~~~p~LafiG~~~~-----------~~~f~~~E~Qa~~~a~v~sG~~~  353 (461)
T PLN02172        307 EPLYKHVFPPALAPGLSFIGLPAM-----------GIQFVMFEIQSKWVAAVLSGRVT  353 (461)
T ss_pred             hhhHHhhcCCCCCCcEEEEecccc-----------ccCchhHHHHHHHHHHHHcCCCC
Confidence                 1   12 489999993321           11344577899999988876543

>KOG3851 consensus Sulfide:quinone oxidoreductase/flavo-binding protein [Energy production and conversion]

Probab=99.87  E-value=8.5e-22  Score=178.55  Aligned_cols=283  Identities=19%  Similarity=0.251  Sum_probs=187.2

Q ss_pred             CCCCCCcEEEEcCcHHHHHHHHHHHHcCCCCCcEEEEcCCCCCCCCCCCCcccccCCCCCCCCCCCCCccccCCCCCCCC
Q 012165           47 FANENREFVIVGGGNAAGYAARTFVEHGMADGRLCIVSKEAYAPYERPALTKGYLFPLDKKPARLPGFHTCVGSGGERQT  126 (469)
Q Consensus        47 ~~~~~~~vvIIGgG~AGl~aA~~L~~~g~~~~~V~vie~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  126 (469)
                      ....+++|+|||||.+|++.|..+.++-. .++|-|||+...+.|+ |.+.   +.+..-...+-           .++.
T Consensus        35 ~~~~h~kvLVvGGGsgGi~~A~k~~rkl~-~g~vgIvep~e~HyYQ-PgfT---LvGgGl~~l~~-----------srr~   98 (446)
T KOG3851|consen   35 FARKHFKVLVVGGGSGGIGMAAKFYRKLG-SGSVGIVEPAEDHYYQ-PGFT---LVGGGLKSLDS-----------SRRK   98 (446)
T ss_pred             hcccceEEEEEcCCcchhHHHHHHHhhcC-CCceEEecchhhcccC-cceE---Eeccchhhhhh-----------ccCc
Confidence            34578899999999999999999988753 7899999999998776 6542   11111111000           0011


Q ss_pred             HhHHHHCCcEEEeCCcEEEEeCCCcEEEeCCCeEEEeccEEeccCCCCCcCCCCCC----CCcCcEEEecCHHHHHHHHH
Q 012165          127 PEWYKEKGIEMIYQDPVTSIDIEKQTLITNSGKLLKYGSLIVATGCTASRFPEKIG----GYLPGVHYIRDVADADALIS  202 (469)
Q Consensus       127 ~~~~~~~~i~~~~~~~v~~id~~~~~v~~~~g~~~~yd~lVlAtG~~~~~~~~~~g----~~~~~v~~~~~~~~~~~~~~  202 (469)
                      ...+--.+...+. ..|...++++++|.+.+|++|.||+||||+|.+-+ ...++|    .+.|++-+..+....++..+
T Consensus        99 ~a~liP~~a~wi~-ekv~~f~P~~N~v~t~gg~eIsYdylviA~Giql~-y~~IkGl~Eal~tP~VcSnYSpkyvdk~y~  176 (446)
T KOG3851|consen   99 QASLIPKGATWIK-EKVKEFNPDKNTVVTRGGEEISYDYLVIAMGIQLD-YGKIKGLVEALDTPGVCSNYSPKYVDKVYK  176 (446)
T ss_pred             ccccccCCcHHHH-HHHHhcCCCcCeEEccCCcEEeeeeEeeeeeceec-cchhcChHhhccCCCcccccChHHHHHHHH
Confidence            1111122333333 47888999999999999999999999999998754 455544    24567766666555555444


Q ss_pred             hh---hcCCeEEEEcCChH--------HHHHH-HHHHhCCCeEe--------------------eeHHHHHHcCcEEEcC
Q 012165          203 SL---EKAKKVVVVGGGYI--------GMEVA-AAAVGWKLDTT--------------------RYEQLYQQNGVKFVKG  250 (469)
Q Consensus       203 ~~---~~~~~vvVvG~G~~--------g~e~A-~~l~~~g~~v~--------------------~~~~~l~~~gV~~~~~  250 (469)
                      .+   +.+.-+.-.-.+++        .+-++ .+++++|.+-.                    .+++..++++|++...
T Consensus       177 ~~~~fk~GNAIfTfPntpiKCAGAPQKi~yise~y~Rk~gvRd~a~iiy~Tsl~~iFgVk~Y~~AL~k~~~~rni~vn~k  256 (446)
T KOG3851|consen  177 ELMNFKKGNAIFTFPNTPIKCAGAPQKIMYISESYFRKRGVRDNANIIYNTSLPTIFGVKHYADALEKVIQERNITVNYK  256 (446)
T ss_pred             HHHhccCCceEEecCCCccccCCCchhhhhhhHHHHHHhCccccccEEEecCccceecHHHHHHHHHHHHHhcceEeeec
Confidence            33   34444444433333        23333 25666665533                    5677788899999998


Q ss_pred             CeEEEEEeCCCCcEEEEEcCCC--CEEeCCEEEEccCCccCCchhhhcCCcccCCCEEeCC-CCCC-CCCceEEeccccc
Q 012165          251 ASIKNLEAGSDGRVAAVKLEDG--STIDADTIVIGIGAKPTVSPFERVGLNSSVGGIQVDG-QFRT-RMPGIFAIGDVAA  326 (469)
Q Consensus       251 ~~v~~i~~~~~~~v~~v~~~~g--~~i~~D~vi~a~G~~p~~~~~~~~gl~~~~g~i~Vd~-~~~t-~~~~Vfa~GD~a~  326 (469)
                      ....++..++...+....-+-|  ++++++++-+....++. +++.++.+.+..|++.||. ++|. .+||||++|||..
T Consensus       257 rnLiEV~~~~~~AvFe~L~kPG~t~ei~yslLHv~Ppms~p-e~l~~s~~adktGfvdVD~~TlQs~kypNVFgiGDc~n  335 (446)
T KOG3851|consen  257 RNLIEVRTNDRKAVFENLDKPGVTEEIEYSLLHVTPPMSTP-EVLANSDLADKTGFVDVDQSTLQSKKYPNVFGIGDCMN  335 (446)
T ss_pred             cceEEEeccchhhHHHhcCCCCceeEEeeeeeeccCCCCCh-hhhhcCcccCcccceecChhhhccccCCCceeeccccC
Confidence            8888887432221211111224  57899999999888876 7788888877789999995 6776 8999999999999


Q ss_pred             cCCccCCcccccchHHHHHHHHHHHHHHHh
Q 012165          327 FPLKMYDRTARVEHVDHARQSAQHCIKALL  356 (469)
Q Consensus       327 ~~~~~~~~~~~~~~~~~A~~~a~~~a~~i~  356 (469)
                      .|...        .......|...+-+|+.
T Consensus       336 ~PnsK--------TaAAvaaq~~vv~~nl~  357 (446)
T KOG3851|consen  336 LPNSK--------TAAAVAAQSPVVDKNLT  357 (446)
T ss_pred             CCchh--------hHHHHHhcCchhhhhHH
Confidence            88743        22233345566666664

>PF07992 Pyr_redox_2: Pyridine nucleotide-disulphide oxidoreductase; InterPro: IPR023753 FAD flavoproteins belonging to the family of pyridine nucleotide-disulphide oxidoreductases (glutathione reductase, trypanothione reductase, lipoamide dehydrogenase, mercuric reductase, thioredoxin reductase, alkyl hydroperoxide reductase) share sequence similarity with a number of other flavoprotein oxidoreductases, in particular with ferredoxin-NAD+ reductases involved in oxidative metabolism of a variety of hydrocarbons (rubredoxin reductase, putidaredoxin reductase, terpredoxin reductase, ferredoxin-NAD+ reductase components of benzene 1,2-dioxygenase, toluene 1,2-dioxygenase, chlorobenzene dioxygenase, biphenyl dioxygenase), NADH oxidase and NADH peroxidase [, , ]

Probab=99.85  E-value=7.2e-23  Score=185.52  Aligned_cols=188  Identities=30%  Similarity=0.477  Sum_probs=130.7

Q ss_pred             cEEEEcCcHHHHHHHHHHHHcCCCCCcEEEEcCCCCCCCCCCCCcccccCCCCCCCCCCCCCccccCCCCCCCCHhHHHH
Q 012165           53 EFVIVGGGNAAGYAARTFVEHGMADGRLCIVSKEAYAPYERPALTKGYLFPLDKKPARLPGFHTCVGSGGERQTPEWYKE  132 (469)
Q Consensus        53 ~vvIIGgG~AGl~aA~~L~~~g~~~~~V~vie~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  132 (469)
                      ||||||||+||++||.+|++.+.   +++++++.+..+|....++...+..............       .....+.+..
T Consensus         1 ~vvIIGgG~aGl~aA~~l~~~~~---~v~ii~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-------~~~~~~~~~~   70 (201)
T PF07992_consen    1 DVVIIGGGPAGLSAALELARPGA---KVLIIEKSPGTPYNSGCIPSPLLVEIAPHRHEFLPAR-------LFKLVDQLKN   70 (201)
T ss_dssp             EEEEESSSHHHHHHHHHHHHTTS---EEEEESSSSHHHHHHSHHHHHHHHHHHHHHHHHHHHH-------HGHHHHHHHH
T ss_pred             CEEEEecHHHHHHHHHHHhcCCC---eEEEEeccccccccccccccccccccccccccccccc-------cccccccccc
Confidence            69999999999999999998876   8999998876555433333322111000000000000       0012233467


Q ss_pred             CCcEEEeCCcEEEEeCCCcEE----------EeCCCeEEEeccEEeccCCCCCcCCCCCCCCcCcEEEecCHHHHHHHHH
Q 012165          133 KGIEMIYQDPVTSIDIEKQTL----------ITNSGKLLKYGSLIVATGCTASRFPEKIGGYLPGVHYIRDVADADALIS  202 (469)
Q Consensus       133 ~~i~~~~~~~v~~id~~~~~v----------~~~~g~~~~yd~lVlAtG~~~~~~~~~~g~~~~~v~~~~~~~~~~~~~~  202 (469)
                      .+++++.++++.+++...+.+          ...++.++.||+||||||+.|+ .|.++|.  +.....++..+++.+..
T Consensus        71 ~~v~~~~~~~v~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~d~lviAtG~~~~-~~~i~g~--~~~~~~~~~~~~~~~~~  147 (201)
T PF07992_consen   71 RGVEIRLNAKVVSIDPESKRVVCPAVTIQVVETGDGREIKYDYLVIATGSRPR-TPNIPGE--EVAYFLRGVDDAQRFLE  147 (201)
T ss_dssp             HTHEEEHHHTEEEEEESTTEEEETCEEEEEEETTTEEEEEEEEEEEESTEEEE-EESSTTT--TTECBTTSEEHHHHHHT
T ss_pred             ceEEEeeccccccccccccccccCcccceeeccCCceEecCCeeeecCccccc-eeecCCC--ccccccccccccccccc
Confidence            899998888999999988742          2345668999999999999876 3555554  22223355567788877


Q ss_pred             hhhcCCeEEEEcCChHHHHHHHHHHhCCCeEeeeHHHHHHcCcEEEcCCeEEEEEeCCCCcEEEEEcCCCCEEeCCEEEE
Q 012165          203 SLEKAKKVVVVGGGYIGMEVAAAAVGWKLDTTRYEQLYQQNGVKFVKGASIKNLEAGSDGRVAAVKLEDGSTIDADTIVI  282 (469)
Q Consensus       203 ~~~~~~~vvVvG~G~~g~e~A~~l~~~g~~v~~~~~~l~~~gV~~~~~~~v~~i~~~~~~~v~~v~~~~g~~i~~D~vi~  282 (469)
                      ....+++++|||                                                                    
T Consensus       148 ~~~~~~~v~VvG--------------------------------------------------------------------  159 (201)
T PF07992_consen  148 LLESPKRVAVVG--------------------------------------------------------------------  159 (201)
T ss_dssp             HSSTTSEEEEES--------------------------------------------------------------------
T ss_pred             cccccccccccc--------------------------------------------------------------------
Confidence            777777999999                                                                    


Q ss_pred             ccCCccCCchh-hhcCCccc-CCCEEeCCCCCCCCCceEEeccccccC
Q 012165          283 GIGAKPTVSPF-ERVGLNSS-VGGIQVDGQFRTRMPGIFAIGDVAAFP  328 (469)
Q Consensus       283 a~G~~p~~~~~-~~~gl~~~-~g~i~Vd~~~~t~~~~Vfa~GD~a~~~  328 (469)
                             +++| +..+++.+ +|++.||+++||+.|||||+|||+..+
T Consensus       160 -------~~~l~~~~~~~~~~~g~i~vd~~~~t~~~~Iya~GD~a~~~  200 (201)
T PF07992_consen  160 -------TEFLAEKLGVELDENGFIKVDENLQTSVPGIYAAGDCAGIY  200 (201)
T ss_dssp             -------TTTSTHHTTSTBTTTSSBEEBTTSBBSSTTEEE-GGGBEES
T ss_pred             -------ccccccccccccccccccccccccccccccccccccccccC
Confidence                   4556 78888875 678999999999999999999999754

Comparison of the crystal structures of human glutathione reductase and Escherichia coli thioredoxin reductase reveals different locations of their active sites, suggesting that the enzymes diverged from an ancestral FAD/NAD(P)H reductase and acquired their disulphide reductase activities independently []. Despite functional similarities, oxidoreductases of this family show no sequence similarity with adrenodoxin reductases [] and flavoprotein pyridine nucleotide cytochrome reductases (FPNCR) []. Assuming that disulphide reductase activity emerged later, during divergent evolution, the family can be referred to as FAD-dependent pyridine nucleotide reductases, FADPNR. To date, 3D structures of glutathione reductase [], thioredoxin reductase [], mercuric reductase [], lipoamide dehydrogenase [], trypanothione reductase [] and NADH peroxidase [] have been solved. The enzymes share similar tertiary structures based on a doubly-wound alpha/beta fold, but the relative orientations of their FAD- and NAD(P)H-binding domains may vary significantly. By contrast with the FPNCR family, the folds of the FAD- and NAD(P)H-binding domains are similar, suggesting that the domains evolved by gene duplication []. This entry describes the FAD binding domain which has a nested NADH binding domain and is found in both class I and class II oxidoreductases. ; GO: 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 3IC9_A 1Q1W_A 3LB8_A 1Q1R_B 3GD4_A 1GV4_A 3GD3_A 2EQ9_E 2EQ6_B 2EQ8_E ....

>KOG2755 consensus Oxidoreductase [General function prediction only]

Probab=99.84  E-value=1.4e-20  Score=166.32  Aligned_cols=248  Identities=25%  Similarity=0.377  Sum_probs=157.8

Q ss_pred             cEEEEcCcHHHHHHHHHHHHcCCCCCcEEEEcCCCCC----CCCCCCCcccccCCCCCCCCCCCCCccccCCCCCCCCHh
Q 012165           53 EFVIVGGGNAAGYAARTFVEHGMADGRLCIVSKEAYA----PYERPALTKGYLFPLDKKPARLPGFHTCVGSGGERQTPE  128 (469)
Q Consensus        53 ~vvIIGgG~AGl~aA~~L~~~g~~~~~V~vie~~~~~----~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  128 (469)
                      +.+|||||+||.+||..|+.+-+ ..+|.++...+..    .|..  ..+ |+...+-..                   .
T Consensus         1 kfivvgggiagvscaeqla~~~p-sa~illitass~vksvtn~~~--i~~-ylekfdv~e-------------------q   57 (334)
T KOG2755|consen    1 KFIVVGGGIAGVSCAEQLAQLEP-SAEILLITASSFVKSVTNYQK--IGQ-YLEKFDVKE-------------------Q   57 (334)
T ss_pred             CeEEEcCccccccHHHHHHhhCC-CCcEEEEeccHHHHHHhhHHH--HHH-HHHhcCccc-------------------c
Confidence            46999999999999999999864 7899999987642    1110  111 111100000                   0


Q ss_pred             HHHHCCcEE--EeCCcEEEEeCCCcEEEeCCCeEEEeccEEeccCCCCCcCCCCCCCCcCcEEEecCHHHHHHHHHhhhc
Q 012165          129 WYKEKGIEM--IYQDPVTSIDIEKQTLITNSGKLLKYGSLIVATGCTASRFPEKIGGYLPGVHYIRDVADADALISSLEK  206 (469)
Q Consensus       129 ~~~~~~i~~--~~~~~v~~id~~~~~v~~~~g~~~~yd~lVlAtG~~~~~~~~~~g~~~~~v~~~~~~~~~~~~~~~~~~  206 (469)
                      -..+.+.++  +.+ .|..++...+.+.+++|.++.|++|+++||++|...-  .+ .-+.+...|+.+..+.+...+.+
T Consensus        58 ~~~elg~~f~~~~~-~v~~~~s~ehci~t~~g~~~ky~kKOG~tg~kPklq~--E~-~n~~Iv~irDtDsaQllq~kl~k  133 (334)
T KOG2755|consen   58 NCHELGPDFRRFLN-DVVTWDSSEHCIHTQNGEKLKYFKLCLCTGYKPKLQV--EG-INPKIVGIRDTDSAQLLQCKLVK  133 (334)
T ss_pred             chhhhcccHHHHHH-hhhhhccccceEEecCCceeeEEEEEEecCCCcceee--cC-CCceEEEEecCcHHHHHHHHHhh
Confidence            011111111  122 3666777888999999999999999999999987432  22 24567778888888888888899


Q ss_pred             CCeEEEEcCChHHHHHHHHHHhCCCeEe-----------------eeHHH------------------------------
Q 012165          207 AKKVVVVGGGYIGMEVAAAAVGWKLDTT-----------------RYEQL------------------------------  239 (469)
Q Consensus       207 ~~~vvVvG~G~~g~e~A~~l~~~g~~v~-----------------~~~~~------------------------------  239 (469)
                      .|.|.|+|.|-+++|++.++....+.-.                 .+...                              
T Consensus       134 aK~VlilgnGgia~El~yElk~~nv~w~ikd~~IsaTFfdpGaaef~~i~l~a~~s~~~iaiKh~q~iea~pk~~~n~vg  213 (334)
T KOG2755|consen  134 AKIVLILGNGGIAMELTYELKILNVTWKIKDEGISATFFDPGAAEFYDINLRADRSTRIIAIKHFQYIEAFPKCEENNVG  213 (334)
T ss_pred             cceEEEEecCchhHHHHHHhhcceeEEEecchhhhhcccCccHHHHhHhhhhcccccchhhhhhhhhhhhcCcccccCcc
Confidence            9999999999999999999875432111                 00000                              


Q ss_pred             ------------------HHHcCcEEEcCCeEEEEEeCCCCcEEEEEcCCC--CEEeCCEEEEccCCccCCchhhhcCCc
Q 012165          240 ------------------YQQNGVKFVKGASIKNLEAGSDGRVAAVKLEDG--STIDADTIVIGIGAKPTVSPFERVGLN  299 (469)
Q Consensus       240 ------------------l~~~gV~~~~~~~v~~i~~~~~~~v~~v~~~~g--~~i~~D~vi~a~G~~p~~~~~~~~gl~  299 (469)
                                        -+++-+....+..+....+.+...+.......|  ..+.||.+++++|..||.+++-...+.
T Consensus       214 ~algpDw~s~~dl~g~~eseer~l~~l~~~~~~~~d~~d~~sv~~~~~ek~~~~qlt~d~ivSatgvtpn~e~~~~~~lq  293 (334)
T KOG2755|consen  214 PALGPDWHSQIDLQGISESENRSLTYLRNCVITSTDTSDNLSVHYMDKEKMADNQLTCDFIVSATGVTPNSEWAMNKMLQ  293 (334)
T ss_pred             cccCcchhhhcccccchhhhhhhhHHhhhheeeeccchhhcccccccccccccceeeeeEEEeccccCcCceEEecChhh
Confidence                              001111111111111001111111111111112  367899999999999999975544444


Q ss_pred             c-cCCCEEeCCCCCCCCCceEEecccccc
Q 012165          300 S-SVGGIQVDGQFRTRMPGIFAIGDVAAF  327 (469)
Q Consensus       300 ~-~~g~i~Vd~~~~t~~~~Vfa~GD~a~~  327 (469)
                      . ++|++.||+.|+|+.|++||+||+...
T Consensus       294 ~~edggikvdd~m~tslpdvFa~gDvctt  322 (334)
T KOG2755|consen  294 ITEDGGIKVDDAMETSLPDVFAAGDVCTT  322 (334)
T ss_pred             hccccCeeehhhccccccceeeecceecc
Confidence            3 468999999999999999999999873

>PF00743 FMO-like: Flavin-binding monooxygenase-like; InterPro: IPR020946 Flavin-containing monooxygenases (FMOs) constitute a family of xenobiotic-metabolising enzymes []

Probab=99.84  E-value=5.5e-20  Score=187.97  Aligned_cols=279  Identities=21%  Similarity=0.289  Sum_probs=149.2

Q ss_pred             CcEEEEcCcHHHHHHHHHHHHcCCCCCcEEEEcCCCCCC--C--CC---C-----------CCccccc-CCCCCCCCCCC
Q 012165           52 REFVIVGGGNAAGYAARTFVEHGMADGRLCIVSKEAYAP--Y--ER---P-----------ALTKGYL-FPLDKKPARLP  112 (469)
Q Consensus        52 ~~vvIIGgG~AGl~aA~~L~~~g~~~~~V~vie~~~~~~--~--~~---~-----------~l~~~~~-~~~~~~~~~~~  112 (469)
                      ++|+|||||++||++|+.|++.|+   +++++|+++..+  |  ..   +           ..++... +.....+.+.|
T Consensus         2 krVaVIGaG~sGL~a~k~l~e~g~---~~~~fE~~~~iGG~W~~~~~~~~g~~~~y~sl~~n~sk~~~~fsdfp~p~~~p   78 (531)
T PF00743_consen    2 KRVAVIGAGPSGLAAAKNLLEEGL---EVTCFEKSDDIGGLWRYTENPEDGRSSVYDSLHTNTSKEMMAFSDFPFPEDYP   78 (531)
T ss_dssp             -EEEEE--SHHHHHHHHHHHHTT----EEEEEESSSSSSGGGCHSTTCCCSEGGGSTT-B-SS-GGGSCCTTS-HCCCCS
T ss_pred             CEEEEECccHHHHHHHHHHHHCCC---CCeEEecCCCCCccCeeCCcCCCCccccccceEEeeCchHhcCCCcCCCCCCC
Confidence            689999999999999999999998   799999998765  1  10   0           0111111 11111222222


Q ss_pred             CCccccCCCCCCCCHhHHHHCCc--EEEeCCcEEEEeCCC-------cEEEeCC-Ce--EEEeccEEeccCCC--CCcCC
Q 012165          113 GFHTCVGSGGERQTPEWYKEKGI--EMIYQDPVTSIDIEK-------QTLITNS-GK--LLKYGSLIVATGCT--ASRFP  178 (469)
Q Consensus       113 ~~~~~~~~~~~~~~~~~~~~~~i--~~~~~~~v~~id~~~-------~~v~~~~-g~--~~~yd~lVlAtG~~--~~~~~  178 (469)
                      .|...  .+..+.+.++.++.++  .++++++|+++....       -.|++.+ |+  +-.||+||+|||..  |. +|
T Consensus        79 ~f~~~--~~v~~Yl~~Ya~~f~L~~~I~fnt~V~~v~~~~d~~~~~~W~V~~~~~g~~~~~~fD~VvvatG~~~~P~-~P  155 (531)
T PF00743_consen   79 DFPSH--SEVLEYLESYAEHFGLRKHIRFNTEVVSVERDPDFSATGKWEVTTENDGKEETEEFDAVVVATGHFSKPN-IP  155 (531)
T ss_dssp             SSEBH--HHHHHHHHHHHHHTTGGGGEETSEEEEEEEEETTTT-ETEEEEEETTTTEEEEEEECEEEEEE-SSSCES-B-
T ss_pred             CCCCH--HHHHHHHHHHHhhhCCcceEEEccEEeEeeeccccCCCceEEEEeecCCeEEEEEeCeEEEcCCCcCCCC-CC
Confidence            22110  0111223344556666  378899999987532       2466643 32  45799999999954  43 34


Q ss_pred             C--CCCCC-cCcE-EEecCHHHHHHHHHhhhcCCeEEEEcCChHHHHHHHHHHhCCCeEe--------------------
Q 012165          179 E--KIGGY-LPGV-HYIRDVADADALISSLEKAKKVVVVGGGYIGMEVAAAAVGWKLDTT--------------------  234 (469)
Q Consensus       179 ~--~~g~~-~~~v-~~~~~~~~~~~~~~~~~~~~~vvVvG~G~~g~e~A~~l~~~g~~v~--------------------  234 (469)
                      .  ++|.+ .+|- .+..+..+.     ...++|+|+|||+|.+|+++|..++....++.                    
T Consensus       156 ~~~~~G~e~F~G~i~HS~~yr~~-----~~f~gKrVlVVG~g~Sg~DIa~el~~~a~~v~~s~R~~~wv~pr~~~~G~P~  230 (531)
T PF00743_consen  156 EPSFPGLEKFKGEIIHSKDYRDP-----EPFKGKRVLVVGGGNSGADIAVELSRVAKKVYLSTRRGAWVLPRYWDNGYPF  230 (531)
T ss_dssp             ----CTGGGHCSEEEEGGG--TG-----GGGTTSEEEEESSSHHHHHHHHHHTTTSCCEEEECC----------------
T ss_pred             hhhhhhhhcCCeeEEccccCcCh-----hhcCCCEEEEEeCCHhHHHHHHHHHHhcCCeEEEEecccccccccccccccc
Confidence            2  44532 3443 232222221     22479999999999999999999998877765                    


Q ss_pred             -------------------------------------------------------eeHHHHHHcCcEEEcCCeEEEEEeC
Q 012165          235 -------------------------------------------------------RYEQLYQQNGVKFVKGASIKNLEAG  259 (469)
Q Consensus       235 -------------------------------------------------------~~~~~l~~~gV~~~~~~~v~~i~~~  259 (469)
                                                                             .+...+....|++..  .|.+++.+
T Consensus       231 D~~~~~R~~~~l~~~lp~~~~~~~~~~~l~~~~~~~~~gl~p~~~~~~~~~~ind~l~~~i~~G~i~vk~--~I~~~~~~  308 (531)
T PF00743_consen  231 DMVFSTRFSSFLQKNLPESLSNWLLEKKLNKRFDHENYGLKPKHRFFSQHPTINDELPNRIRSGRIKVKP--DIKRFTEN  308 (531)
T ss_dssp             --------------------------------------------------------------------EE---EEEE-SS
T ss_pred             cccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccc--cccccccc
Confidence                                                                   111222222233221  23444311


Q ss_pred             CCCcEEEEEcCCCCEE-eCCEEEEccCCccCCchhhhcCCcccCCCEEeCCCC---CCCCCceEEeccccccCCccCCcc
Q 012165          260 SDGRVAAVKLEDGSTI-DADTIVIGIGAKPTVSPFERVGLNSSVGGIQVDGQF---RTRMPGIFAIGDVAAFPLKMYDRT  335 (469)
Q Consensus       260 ~~~~v~~v~~~~g~~i-~~D~vi~a~G~~p~~~~~~~~gl~~~~g~i~Vd~~~---~t~~~~Vfa~GD~a~~~~~~~~~~  335 (469)
                            +|.+.||+++ ++|.||+|||++.+.+||++.-+...++.+..-.++   +...|++..+|=+...     |  
T Consensus       309 ------~v~F~DGs~~e~vD~II~~TGY~~~fpFL~~~~~~~~~~~~~LYk~vfp~~~~~ptLafIG~~~~~-----g--  375 (531)
T PF00743_consen  309 ------SVIFEDGSTEEDVDVIIFCTGYKFSFPFLDESLIKVDDNRVRLYKHVFPPNLDHPTLAFIGLVQPF-----G--  375 (531)
T ss_dssp             ------EEEETTSEEEEE-SEEEE---EE---TTB-TTTT-S-SSSSSEETTTEETETTSTTEEESS-SBSS-----S--
T ss_pred             ------cccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccc-----c--
Confidence                  5778999875 699999999999998888875444333332222222   1135788888854321     1  


Q ss_pred             cccchHHHHHHHHHHHHHHHhcCC
Q 012165          336 ARVEHVDHARQSAQHCIKALLSAQ  359 (469)
Q Consensus       336 ~~~~~~~~A~~~a~~~a~~i~~~~  359 (469)
                         ..+..+..||+.+|+-+.|..
T Consensus       376 ---~~fp~~ElQArw~a~v~sG~~  396 (531)
T PF00743_consen  376 ---SIFPIFELQARWAARVFSGRV  396 (531)
T ss_dssp             ----HHHHHHHHHHHHHHHHTTSS
T ss_pred             ---ccccccccccccccccccccc
Confidence               134557889999998887644

Using an NADPH cofactor and FAD prosthetic group, these microsomal proteins catalyse the oxygenation of nucleophilic nitrogen, sulphur, phosphorous and selenium atoms in a range of structurally diverse compounds. FMOs have been implicated in the metabolism of a number of pharmaceuticals, pesticides and toxicants. In man, lack of hepatic FMO-catalysed trimethylamine metabolism results in trimethylaminuria (fish odour syndrome). Five mammalian forms of FMO are now known and have been designated FMO1-FMO5 [, , , , ]. This is a recent nomenclature based on comparison of amino acid sequences, and has been introduced in an attempt to eliminate confusion inherent in multiple, laboratory-specific designations and tissue-based classifications []. Following the determination of the complete nucleotide sequence of Saccharomyces cerevisiae (Baker's yeast) [], a novel gene was found to encode a protein with similarity to mammalian monooygenases.; GO: 0004499 flavin-containing monooxygenase activity, 0050660 flavin adenine dinucleotide binding, 0050661 NADP binding, 0055114 oxidation-reduction process; PDB: 2GVC_E 1VQW_B 2GV8_B 2XVI_B 2XVH_B 2XLS_A 2XLR_A 2XLU_D 2XLP_B 2XVE_A ....

>COG1148 HdrA Heterodisulfide reductase, subunit A and related polyferredoxins [Energy production and conversion]

Probab=99.71  E-value=3e-16  Score=150.35  Aligned_cols=282  Identities=22%  Similarity=0.331  Sum_probs=159.0

Q ss_pred             CCCCCcEEEEcCcHHHHHHHHHHHHcCCCCCcEEEEcCCCCCCCCCCCCcccccCCCCCCCCCCCCCccccCCCCCCCCH
Q 012165           48 ANENREFVIVGGGNAAGYAARTFVEHGMADGRLCIVSKEAYAPYERPALTKGYLFPLDKKPARLPGFHTCVGSGGERQTP  127 (469)
Q Consensus        48 ~~~~~~vvIIGgG~AGl~aA~~L~~~g~~~~~V~vie~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  127 (469)
                      ....++++|||||+||++||+.|++.|+   ++.|+|+++..+.+...+.+.+-........-.|            ...
T Consensus       121 ~~v~~svLVIGGGvAGitAAl~La~~G~---~v~LVEKepsiGGrmak~~k~FP~~dcs~C~LaP------------~m~  185 (622)
T COG1148         121 VEVSKSVLVIGGGVAGITAALELADMGF---KVYLVEKEPSIGGRMAKLNKTFPTNDCSICILAP------------KMV  185 (622)
T ss_pred             HhhccceEEEcCcHHHHHHHHHHHHcCC---eEEEEecCCcccccHHhhhccCCCcccchhhccc------------hhh
Confidence            3456899999999999999999999999   7999999998876654444422111111110011            111


Q ss_pred             hHHHHCCcEEEeCCcEEEEeCC----------------------------------------------------------
Q 012165          128 EWYKEKGIEMIYQDPVTSIDIE----------------------------------------------------------  149 (469)
Q Consensus       128 ~~~~~~~i~~~~~~~v~~id~~----------------------------------------------------------  149 (469)
                      +...+.++++++.++|..++-.                                                          
T Consensus       186 ~v~~hp~i~l~TyaeV~ev~G~vGnF~vki~kkpryVdd~CtgCg~C~~vCPve~~nefn~Gl~~~kAiy~p~~qaVp~~  265 (622)
T COG1148         186 EVSNHPNIELITYAEVEEVSGSVGNFTVKIEKKPRYVDDKCTGCGACSEVCPVEVPNEFNEGLGKRKAIYIPFPQAVPLN  265 (622)
T ss_pred             hhccCCceeeeeeeeeeeecccccceEEEEecccccccccccccccccccCCcccCcccccccccceeeeccchhhcccc
Confidence            2223334444444444332110                                                          


Q ss_pred             -------------------CcEEEeCC-Ce--EEEeccEEeccCCCCCcCCCC--CC-CCcCcEEEecCHHHHHHHHHhh
Q 012165          150 -------------------KQTLITNS-GK--LLKYGSLIVATGCTASRFPEK--IG-GYLPGVHYIRDVADADALISSL  204 (469)
Q Consensus       150 -------------------~~~v~~~~-g~--~~~yd~lVlAtG~~~~~~~~~--~g-~~~~~v~~~~~~~~~~~~~~~~  204 (469)
                                         ...|.++. ++  ++....+|+|||-.+......  -| ...+++.+.   ...+++...-
T Consensus       266 ~~Id~~~c~~c~~C~~ac~~~av~~~q~~e~ve~~vGaIIvAtGy~~~Da~~k~EyGYG~~~nVIT~---lElErml~~~  342 (622)
T COG1148         266 YNIDPKHCIECGLCEKACPNEAVDLNQEPEEVELEVGAIIVATGYKPFDATRKEEYGYGKYPNVITN---LELERMLNPN  342 (622)
T ss_pred             cccChhhhccchhhhhcCCccccccCCCCcEEEEEeceEEEEccccccCcchhhhcCCCCCcchhhH---HHHHHHhccC
Confidence                               00111222 22  577889999999776422111  11 113444332   2334433211


Q ss_pred             -------------hcCCeEEEE---cCCh--------------HHHHHHHHHHhCCCeE--e---------------eeH
Q 012165          205 -------------EKAKKVVVV---GGGY--------------IGMEVAAAAVGWKLDT--T---------------RYE  237 (469)
Q Consensus       205 -------------~~~~~vvVv---G~G~--------------~g~e~A~~l~~~g~~v--~---------------~~~  237 (469)
                                   +++++|+.|   |+-.              .++.-|....++..+.  +               ++.
T Consensus       343 GPT~GkvlrpSdg~~pKrVaFIqCVGSRD~~~~n~YCSrvCCm~slKqA~~Ike~~Pd~~v~I~YmDiRafG~~yEefY~  422 (622)
T COG1148         343 GPTGGKVLRPSDGKPPKRVAFIQCVGSRDFQVGNPYCSRVCCMVSLKQAQLIKERYPDTDVTIYYMDIRAFGKDYEEFYV  422 (622)
T ss_pred             CCCCceEEecCCCCCCceEEEEEEecCcCcccCChhhHHHHHHHHHhhhhhhhhcCCCcceeEEEEEeeccCccHHHHHH
Confidence                         245677765   5543              1233333444443332  2               333


Q ss_pred             HHHHHcCcEEEcCCeEEEEEeCCCCcEEEEEcCCC-----CEEeCCEEEEccCCccCCc---hhhhcCCccc-CCCEEeC
Q 012165          238 QLYQQNGVKFVKGASIKNLEAGSDGRVAAVKLEDG-----STIDADTIVIGIGAKPTVS---PFERVGLNSS-VGGIQVD  308 (469)
Q Consensus       238 ~~l~~~gV~~~~~~~v~~i~~~~~~~v~~v~~~~g-----~~i~~D~vi~a~G~~p~~~---~~~~~gl~~~-~g~i~Vd  308 (469)
                      +.-++.||+++.+ ++.+|...+++.+ .|..+|.     .++++|+|++++|+.|...   +.+-+||..+ +|++...
T Consensus       423 ~~Q~~~gV~fIRG-rvaei~e~p~~~l-~V~~EdTl~g~~~e~~~DLVVLa~Gmep~~g~~kia~iLgL~~~~~gF~k~~  500 (622)
T COG1148         423 RSQEDYGVRFIRG-RVAEIAEFPKKKL-IVRVEDTLTGEVKEIEADLVVLATGMEPSEGAKKIAKILGLSQDEDGFLKEA  500 (622)
T ss_pred             hhhhhhchhhhcC-ChHHheeCCCCee-EEEEEeccCccceecccceEEEeeccccCcchHHHHHhcCcccCCCCccccC
Confidence            3334789999988 5777776666663 3544443     4789999999999998643   3566788775 5677664


Q ss_pred             -CCC---CCCCCceEEeccccccCCccCCcccccchHHHHHHHHHHHHHHHh
Q 012165          309 -GQF---RTRMPGIFAIGDVAAFPLKMYDRTARVEHVDHARQSAQHCIKALL  356 (469)
Q Consensus       309 -~~~---~t~~~~Vfa~GD~a~~~~~~~~~~~~~~~~~~A~~~a~~~a~~i~  356 (469)
                       +.+   +|+.++||.+|-+.+ |...      ..++.+|..+|..+++.+.
T Consensus       501 hPkl~pv~s~~~GIflAG~aqg-PkdI------~~siaqa~aAA~kA~~~l~  545 (622)
T COG1148         501 HPKLRPVDSNRDGIFLAGAAQG-PKDI------ADSIAQAKAAAAKAAQLLG  545 (622)
T ss_pred             CCCcccccccCCcEEEeecccC-CccH------HHHHHHhHHHHHHHHHHhh
Confidence             444   468899999995554 3321      2345555555555555554

>COG2072 TrkA Predicted flavoprotein involved in K+ transport [Inorganic ion transport and metabolism]

Probab=99.67  E-value=2e-15  Score=151.99  Aligned_cols=177  Identities=21%  Similarity=0.256  Sum_probs=107.4

Q ss_pred             CCCCCCcEEEEcCcHHHHHHHHHHHHcCCCCCcEEEEcCCCCCC-------CC--CCCCccccc-CCCCCC--CCCCCCC
Q 012165           47 FANENREFVIVGGGNAAGYAARTFVEHGMADGRLCIVSKEAYAP-------YE--RPALTKGYL-FPLDKK--PARLPGF  114 (469)
Q Consensus        47 ~~~~~~~vvIIGgG~AGl~aA~~L~~~g~~~~~V~vie~~~~~~-------~~--~~~l~~~~~-~~~~~~--~~~~~~~  114 (469)
                      +.+.++||+|||||++||++|..|++.|.+  +++++|++...+       |.  +...++.++ ++....  ...++.+
T Consensus         4 ~~~~~~~v~IIGaG~sGlaaa~~L~~~g~~--~~~i~Ek~~~~Gg~W~~~ry~~l~~~~p~~~~~~~~~p~~~~~~~~~~   81 (443)
T COG2072           4 GVATHTDVAIIGAGQSGLAAAYALKQAGVP--DFVIFEKRDDVGGTWRYNRYPGLRLDSPKWLLGFPFLPFRWDEAFAPF   81 (443)
T ss_pred             CcCCcccEEEECCCHHHHHHHHHHHHcCCC--cEEEEEccCCcCCcchhccCCceEECCchheeccCCCccCCcccCCCc
Confidence            456778999999999999999999999983  299999997543       11  111111111 111111  1111111


Q ss_pred             ccccCCCCCCCCHhHHHHCCcE--EEeCCcEEEEeCCC----cEEEeCCCeE--EEeccEEeccCC--CCCcCCCCCCCC
Q 012165          115 HTCVGSGGERQTPEWYKEKGIE--MIYQDPVTSIDIEK----QTLITNSGKL--LKYGSLIVATGC--TASRFPEKIGGY  184 (469)
Q Consensus       115 ~~~~~~~~~~~~~~~~~~~~i~--~~~~~~v~~id~~~----~~v~~~~g~~--~~yd~lVlAtG~--~~~~~~~~~g~~  184 (469)
                      .     .......++++++++.  +..+..|..++.+.    .+|+++++..  +.+|+||+|||.  .|. .|.++|.+
T Consensus        82 ~-----~~~~y~~~~~~~y~~~~~i~~~~~v~~~~~~~~~~~w~V~~~~~~~~~~~a~~vV~ATG~~~~P~-iP~~~G~~  155 (443)
T COG2072          82 A-----EIKDYIKDYLEKYGLRFQIRFNTRVEVADWDEDTKRWTVTTSDGGTGELTADFVVVATGHLSEPY-IPDFAGLD  155 (443)
T ss_pred             c-----cHHHHHHHHHHHcCceeEEEcccceEEEEecCCCCeEEEEEcCCCeeeEecCEEEEeecCCCCCC-CCCCCCcc
Confidence            1     0112334556666654  33344555555443    2678887765  459999999994  454 55555543


Q ss_pred             cCcEEEecCHHHHHHHHHhhhcCCeEEEEcCChHHHHHHHHHHhCCCeEe
Q 012165          185 LPGVHYIRDVADADALISSLEKAKKVVVVGGGYIGMEVAAAAVGWKLDTT  234 (469)
Q Consensus       185 ~~~v~~~~~~~~~~~~~~~~~~~~~vvVvG~G~~g~e~A~~l~~~g~~v~  234 (469)
                      ......+.   .++........+|+|+|||+|.+|++++..|.+.+.+|+
T Consensus       156 ~f~g~~~H---S~~~~~~~~~~GKrV~VIG~GaSA~di~~~l~~~ga~vt  202 (443)
T COG2072         156 EFKGRILH---SADWPNPEDLRGKRVLVIGAGASAVDIAPELAEVGASVT  202 (443)
T ss_pred             CCCceEEc---hhcCCCccccCCCeEEEECCCccHHHHHHHHHhcCCeeE
Confidence            21111111   111111123579999999999999999999999998887

>PF13738 Pyr_redox_3: Pyridine nucleotide-disulphide oxidoreductase; PDB: 3D1C_A 4A9W_B 2YLX_A 2YM2_A 2YLW_A 2YLR_A 2YM1_A 2YLS_A 1W4X_A 2YLT_A

Probab=99.66  E-value=4.2e-16  Score=141.37  Aligned_cols=170  Identities=25%  Similarity=0.324  Sum_probs=95.0

Q ss_pred             EEEcCcHHHHHHHHHHHHcCCCCCcEEEEcCCCCCCCC--C-CCCcccccCCCCC-CCCCCCCC---c--c---------
Q 012165           55 VIVGGGNAAGYAARTFVEHGMADGRLCIVSKEAYAPYE--R-PALTKGYLFPLDK-KPARLPGF---H--T---------  116 (469)
Q Consensus        55 vIIGgG~AGl~aA~~L~~~g~~~~~V~vie~~~~~~~~--~-~~l~~~~~~~~~~-~~~~~~~~---~--~---------  116 (469)
                      +|||||+|||++|.+|++.|.+  +++|+|+++..+-.  . +.... ...+... ....++.+   .  .         
T Consensus         1 ~IIGaG~aGl~~a~~l~~~g~~--~v~v~e~~~~~Gg~w~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   77 (203)
T PF13738_consen    1 VIIGAGPAGLAAAAHLLERGID--PVVVLERNDRPGGVWRRYYSYTR-LHSPSFFSSDFGLPDFESFSFDDSPEWRWPHD   77 (203)
T ss_dssp             EEE--SHHHHHHHHHHHHTT-----EEEEESSSSSTTHHHCH-TTTT--BSSSCCTGGSS--CCCHSCHHHHHHHHHSBS
T ss_pred             CEECcCHHHHHHHHHHHhCCCC--cEEEEeCCCCCCCeeEEeCCCCc-cccCccccccccCCcccccccccCCCCCCCcc
Confidence            7999999999999999999872  39999998665310  0 00000 0000000 00001100   0  0         


Q ss_pred             -ccCCCCCCCCHhHHHHCCcEEEeCCcEEEEeCCC--cEEEeCCCeEEEeccEEeccCC--CCCcCCCCCC-CCcCcEEE
Q 012165          117 -CVGSGGERQTPEWYKEKGIEMIYQDPVTSIDIEK--QTLITNSGKLLKYGSLIVATGC--TASRFPEKIG-GYLPGVHY  190 (469)
Q Consensus       117 -~~~~~~~~~~~~~~~~~~i~~~~~~~v~~id~~~--~~v~~~~g~~~~yd~lVlAtG~--~~~~~~~~~g-~~~~~v~~  190 (469)
                       ....+....+..+.++++++++++++|+++..++  ..|++.+++++.+|+||+|||.  .|+ .|.+++ .+. ...+
T Consensus        78 ~~~~~~v~~yl~~~~~~~~l~i~~~~~V~~v~~~~~~w~v~~~~~~~~~a~~VVlAtG~~~~p~-~p~~~g~~~~-~~~h  155 (203)
T PF13738_consen   78 FPSGEEVLDYLQEYAERFGLEIRFNTRVESVRRDGDGWTVTTRDGRTIRADRVVLATGHYSHPR-IPDIPGSAFR-PIIH  155 (203)
T ss_dssp             SEBHHHHHHHHHHHHHHTTGGEETS--EEEEEEETTTEEEEETTS-EEEEEEEEE---SSCSB----S-TTGGCS-EEEE
T ss_pred             cCCHHHHHHHHHHHHhhcCcccccCCEEEEEEEeccEEEEEEEecceeeeeeEEEeeeccCCCC-cccccccccc-ceEe
Confidence             0001111223345567799999999999998765  4788989888999999999995  554 465666 322 3333


Q ss_pred             ecCHHHHHHHHHhhhcCCeEEEEcCChHHHHHHHHHHhCCCeEe
Q 012165          191 IRDVADADALISSLEKAKKVVVVGGGYIGMEVAAAAVGWKLDTT  234 (469)
Q Consensus       191 ~~~~~~~~~~~~~~~~~~~vvVvG~G~~g~e~A~~l~~~g~~v~  234 (469)
                      ..+..+.     ....+++|+|||+|.+|++++..|.+.+.+|+
T Consensus       156 ~~~~~~~-----~~~~~k~V~VVG~G~SA~d~a~~l~~~g~~V~  194 (203)
T PF13738_consen  156 SADWRDP-----EDFKGKRVVVVGGGNSAVDIAYALAKAGKSVT  194 (203)
T ss_dssp             GGG-STT-----GGCTTSEEEEE--SHHHHHHHHHHTTTCSEEE
T ss_pred             hhhcCCh-----hhcCCCcEEEEcChHHHHHHHHHHHhhCCEEE
Confidence            3222111     12467999999999999999999999998776

...

>PF13434 K_oxygenase: L-lysine 6-monooxygenase (NADPH-requiring); PDB: 3S61_B 3S5W_B

Probab=99.65  E-value=2.1e-15  Score=146.49  Aligned_cols=228  Identities=22%  Similarity=0.299  Sum_probs=121.8

Q ss_pred             CCcEEEEcCcHHHHHHHHHHHHcCCCCCcEEEEcCCCCCCCCCCCCccc------ccCCCCCCCCCCCC----Cccc-cC
Q 012165           51 NREFVIVGGGNAAGYAARTFVEHGMADGRLCIVSKEAYAPYERPALTKG------YLFPLDKKPARLPG----FHTC-VG  119 (469)
Q Consensus        51 ~~~vvIIGgG~AGl~aA~~L~~~g~~~~~V~vie~~~~~~~~~~~l~~~------~~~~~~~~~~~~~~----~~~~-~~  119 (469)
                      .+|+++||.||++|+.|..|.+.+  ..++..+|+.+.+.|+.-.+..+      ++.+.-  ..+-|.    |... ..
T Consensus         2 ~~D~igIG~GP~nLslA~~l~~~~--~~~~~f~e~~~~f~Wh~gmll~~~~~q~~fl~Dlv--t~~~P~s~~sflnYL~~   77 (341)
T PF13434_consen    2 IYDLIGIGFGPFNLSLAALLEEHG--DLKALFLERRPSFSWHPGMLLPGARMQVSFLKDLV--TLRDPTSPFSFLNYLHE   77 (341)
T ss_dssp             EESEEEE--SHHHHHHHHHHHHHH-----EEEEES-SS--TTGGG--SS-B-SS-TTSSSS--TTT-TTSTTSHHHHHHH
T ss_pred             ceeEEEEeeCHHHHHHHHHhhhcC--CCCEEEEecCCCCCcCCccCCCCCccccccccccC--cCcCCCCcccHHHHHHH
Confidence            479999999999999999999986  45899999999877663222111      111100  000010    0000 00


Q ss_pred             CC---------CCC-------CCHhHHH-HCCcEEEeCCcEEEEeCCC------cEEEeC----CCeEEEeccEEeccCC
Q 012165          120 SG---------GER-------QTPEWYK-EKGIEMIYQDPVTSIDIEK------QTLITN----SGKLLKYGSLIVATGC  172 (469)
Q Consensus       120 ~~---------~~~-------~~~~~~~-~~~i~~~~~~~v~~id~~~------~~v~~~----~g~~~~yd~lVlAtG~  172 (469)
                      .+         ...       .+..|+. +..-.+..+.+|+.|++..      ..|.+.    +++.+.+++||||||.
T Consensus        78 ~~rl~~f~~~~~~~p~R~ef~dYl~Wva~~~~~~v~~~~~V~~I~~~~~~~~~~~~V~~~~~~g~~~~~~ar~vVla~G~  157 (341)
T PF13434_consen   78 HGRLYEFYNRGYFFPSRREFNDYLRWVAEQLDNQVRYGSEVTSIEPDDDGDEDLFRVTTRDSDGDGETYRARNVVLATGG  157 (341)
T ss_dssp             TT-HHHHHHH--SS-BHHHHHHHHHHHHCCGTTTEEESEEEEEEEEEEETTEEEEEEEEEETTS-EEEEEESEEEE----
T ss_pred             cCChhhhhhcCCCCCCHHHHHHHHHHHHHhCCCceEECCEEEEEEEecCCCccEEEEEEeecCCCeeEEEeCeEEECcCC
Confidence            00         000       0111222 2343377888999998754      366662    4568999999999998


Q ss_pred             CCCcCCCC-CCCC-cCcEEEecCHHHHHHHHHhhhcCCeEEEEcCChHHHHHHHHHHhCCC--eEe--------------
Q 012165          173 TASRFPEK-IGGY-LPGVHYIRDVADADALISSLEKAKKVVVVGGGYIGMEVAAAAVGWKL--DTT--------------  234 (469)
Q Consensus       173 ~~~~~~~~-~g~~-~~~v~~~~~~~~~~~~~~~~~~~~~vvVvG~G~~g~e~A~~l~~~g~--~v~--------------  234 (469)
                      .|. +|.. .... .+.+++..++....   ......++|+|||||.+|.|++..|.+.+.  +++              
T Consensus       158 ~P~-iP~~~~~~~~~~~v~Hss~~~~~~---~~~~~~~~V~VVGgGQSAAEi~~~L~~~~~~~~V~~i~R~~~~~~~d~s  233 (341)
T PF13434_consen  158 QPR-IPEWFQDLPGSPRVFHSSEYLSRI---DQSLAGKRVAVVGGGQSAAEIFLDLLRRGPEAKVTWISRSPGFFPMDDS  233 (341)
T ss_dssp             EE----GGGGGGTT-TTEEEGGGHHHHH---T-----EEEEEE-SSHHHHHHHHHHHHH-TTEEEEEEESSSS-EB----
T ss_pred             CCC-CCcchhhcCCCCCEEEehHhhhcc---ccccCCCeEEEECCcHhHHHHHHHHHhCCCCcEEEEEECCCccCCCccc
Confidence            886 4533 2211 25677665433321   114578999999999999999999988875  444              


Q ss_pred             -------------------------------------------------eeH-HHHHHcCcEEEcCCeEEEEEeCCCCcE
Q 012165          235 -------------------------------------------------RYE-QLYQQNGVKFVKGASIKNLEAGSDGRV  264 (469)
Q Consensus       235 -------------------------------------------------~~~-~~l~~~gV~~~~~~~v~~i~~~~~~~v  264 (469)
                                                                       .++ +...+..++++.+++|+.++..+++.+
T Consensus       234 ~f~ne~f~P~~v~~f~~l~~~~R~~~l~~~~~~ny~~i~~~~l~~iy~~lY~~~v~g~~~~~l~~~~~v~~~~~~~~~~~  313 (341)
T PF13434_consen  234 PFVNEIFSPEYVDYFYSLPDEERRELLREQRHTNYGGIDPDLLEAIYDRLYEQRVSGRGRLRLLPNTEVTSAEQDGDGGV  313 (341)
T ss_dssp             CCHHGGGSHHHHHHHHTS-HHHHHHHHHHTGGGTSSEB-HHHHHHHHHHHHHHHHHT---SEEETTEEEEEEEEES-SSE
T ss_pred             cchhhhcCchhhhhhhcCCHHHHHHHHHHhHhhcCCCCCHHHHHHHHHHHHHHHhcCCCCeEEeCCCEEEEEEECCCCEE
Confidence                                                             111 222345688999999999998765444


Q ss_pred             EEEEcCC---C--CEEeCCEEEEccCCc
Q 012165          265 AAVKLED---G--STIDADTIVIGIGAK  287 (469)
Q Consensus       265 ~~v~~~~---g--~~i~~D~vi~a~G~~  287 (469)
                       .+.+.+   +  .++++|.||+|||++
T Consensus       314 -~l~~~~~~~~~~~~~~~D~VilATGy~  340 (341)
T PF13434_consen  314 -RLTLRHRQTGEEETLEVDAVILATGYR  340 (341)
T ss_dssp             -EEEEEETTT--EEEEEESEEEE---EE
T ss_pred             -EEEEEECCCCCeEEEecCEEEEcCCcc
Confidence             355543   2  478999999999975

>KOG1800 consensus Ferredoxin/adrenodoxin reductase [Nucleotide transport and metabolism]

Probab=99.63  E-value=4.4e-15  Score=138.46  Aligned_cols=157  Identities=19%  Similarity=0.239  Sum_probs=102.0

Q ss_pred             CCCCCcEEEEcCcHHHHHHHHHHHHcCCCCCcEEEEcCCCCCCCCCCCCcccccCCCCCCCCCCCCCccccCCCCCCCCH
Q 012165           48 ANENREFVIVGGGNAAGYAARTFVEHGMADGRLCIVSKEAYAPYERPALTKGYLFPLDKKPARLPGFHTCVGSGGERQTP  127 (469)
Q Consensus        48 ~~~~~~vvIIGgG~AGl~aA~~L~~~g~~~~~V~vie~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  127 (469)
                      .+..++|.|||+||||+++|..|.++. +...|+|+|+.+.+.    .|...-+.+..+...+.           ...+.
T Consensus        17 qs~~p~vcIVGsGPAGfYtA~~LLk~~-~~~~Vdi~Ek~PvPF----GLvRyGVAPDHpEvKnv-----------intFt   80 (468)
T KOG1800|consen   17 QSSTPRVCIVGSGPAGFYTAQHLLKRH-PNAHVDIFEKLPVPF----GLVRYGVAPDHPEVKNV-----------INTFT   80 (468)
T ss_pred             ccCCceEEEECCCchHHHHHHHHHhcC-CCCeeEeeecCCccc----ceeeeccCCCCcchhhH-----------HHHHH
Confidence            345569999999999999999999973 467999999998752    12221222322222111           12344


Q ss_pred             hHHHHCCcEEEeCCcEEEEeCCCcEEEeCCCeEEEeccEEeccCCCCCcCCCCCCCCcCcEEEecCHHH-------HHHH
Q 012165          128 EWYKEKGIEMIYQDPVTSIDIEKQTLITNSGKLLKYGSLIVATGCTASRFPEKIGGYLPGVHYIRDVAD-------ADAL  200 (469)
Q Consensus       128 ~~~~~~~i~~~~~~~v~~id~~~~~v~~~~g~~~~yd~lVlAtG~~~~~~~~~~g~~~~~v~~~~~~~~-------~~~~  200 (469)
                      ..+++....+.-+..|      +..+.+..- +-.||.+|||+|+...+-..+||+++++|+..+.+-.       .+.+
T Consensus        81 ~~aE~~rfsf~gNv~v------G~dvsl~eL-~~~ydavvLaYGa~~dR~L~IPGe~l~~V~Sarefv~Wyng~P~~~~l  153 (468)
T KOG1800|consen   81 KTAEHERFSFFGNVKV------GRDVSLKEL-TDNYDAVVLAYGADGDRRLDIPGEELSGVISAREFVGWYNGLPENQNL  153 (468)
T ss_pred             HHhhccceEEEeccee------cccccHHHH-hhcccEEEEEecCCCCcccCCCCcccccceehhhhhhhccCCCccccc
Confidence            5556667777766444      122222211 1379999999998765556789998899887653211       1111


Q ss_pred             HHhhhcCCeEEEEcCChHHHHHHHHHHh
Q 012165          201 ISSLEKAKKVVVVGGGYIGMEVAAAAVG  228 (469)
Q Consensus       201 ~~~~~~~~~vvVvG~G~~g~e~A~~l~~  228 (469)
                       +....+++++|||.|.+++++|..|..
T Consensus       154 -e~dls~~~vvIvG~GNVAlDvARiLls  180 (468)
T KOG1800|consen  154 -EPDLSGRKVVIVGNGNVALDVARILLS  180 (468)
T ss_pred             -CcccccceEEEEccCchhhhhhhhhhC
Confidence             111237899999999999999998764

>COG3486 IucD Lysine/ornithine N-monooxygenase [Secondary metabolites biosynthesis, transport, and catabolism]

Probab=99.62  E-value=7.8e-14  Score=132.13  Aligned_cols=273  Identities=18%  Similarity=0.223  Sum_probs=167.5

Q ss_pred             CCCCCcEEEEcCcHHHHHHHHHHHHcCCCCCcEEEEcCCCCCCCCCCCCccc----------ccCCCCCC----------
Q 012165           48 ANENREFVIVGGGNAAGYAARTFVEHGMADGRLCIVSKEAYAPYERPALTKG----------YLFPLDKK----------  107 (469)
Q Consensus        48 ~~~~~~vvIIGgG~AGl~aA~~L~~~g~~~~~V~vie~~~~~~~~~~~l~~~----------~~~~~~~~----------  107 (469)
                      ++...|++.||-||+-|+.|..|.+.+.  .+...+|+.+.+-|+.-.+..+          +....++.          
T Consensus         2 ~~~~~DliGIG~GPfNL~LA~ll~e~~~--~~~lFLerkp~F~WHpGmllegstlQv~FlkDLVTl~~PTs~ySFLNYL~   79 (436)
T COG3486           2 MAEVLDLIGIGIGPFNLSLAALLEEHSG--LKSLFLERKPDFSWHPGMLLEGSTLQVPFLKDLVTLVDPTSPYSFLNYLH   79 (436)
T ss_pred             CCcceeeEEEccCchHHHHHHHhccccC--cceEEEecCCCCCcCCCcccCCccccccchhhhccccCCCCchHHHHHHH
Confidence            4667899999999999999999988763  4799999999887763222111          00000000          


Q ss_pred             -CCCCCCCcccc----CCCCCCCCHhHHHHCCcEEEeCCcEE---EEeCCCc---EEEeCCCeEEEeccEEeccCCCCCc
Q 012165          108 -PARLPGFHTCV----GSGGERQTPEWYKEKGIEMIYQDPVT---SIDIEKQ---TLITNSGKLLKYGSLIVATGCTASR  176 (469)
Q Consensus       108 -~~~~~~~~~~~----~~~~~~~~~~~~~~~~i~~~~~~~v~---~id~~~~---~v~~~~g~~~~yd~lVlAtG~~~~~  176 (469)
                       ..++..|....    .......+-.|....--.++++++|+   .++.+..   .+.+.++..+.++.|||++|.+|..
T Consensus        80 ~h~RLy~Fl~~e~f~i~R~Ey~dY~~Waa~~l~~~rfg~~V~~i~~~~~d~~~~~~~~t~~~~~y~ar~lVlg~G~~P~I  159 (436)
T COG3486          80 EHGRLYEFLNYETFHIPRREYNDYCQWAASQLPSLRFGEEVTDISSLDGDAVVRLFVVTANGTVYRARNLVLGVGTQPYI  159 (436)
T ss_pred             HcchHhhhhhhhcccccHHHHHHHHHHHHhhCCccccCCeeccccccCCcceeEEEEEcCCCcEEEeeeEEEccCCCcCC
Confidence             00111110000    00000112234444456678888998   4444443   3667778889999999999999985


Q ss_pred             CCCCCCCCcCcEEEecCHHHHHHHHHhhhcCCeEEEEcCChHHHHHHHHHHhCCCe----Ee------------------
Q 012165          177 FPEKIGGYLPGVHYIRDVADADALISSLEKAKKVVVVGGGYIGMEVAAAAVGWKLD----TT------------------  234 (469)
Q Consensus       177 ~~~~~g~~~~~v~~~~~~~~~~~~~~~~~~~~~vvVvG~G~~g~e~A~~l~~~g~~----v~------------------  234 (469)
                      +|.......+.+++...+.   .-+..+...++|.|||+|.+|.|+-..|...-..    ..                  
T Consensus       160 P~~f~~l~~~~vfHss~~~---~~~~~~~~~~~V~ViG~GQSAAEi~~~Ll~~~~~~~~~l~witR~~gf~p~d~Skf~~  236 (436)
T COG3486         160 PPCFRSLIGERVFHSSEYL---ERHPELLQKRSVTVIGSGQSAAEIFLDLLNSQPPQDYQLNWITRSSGFLPMDYSKFGL  236 (436)
T ss_pred             ChHHhCcCccceeehHHHH---HhhHHhhcCceEEEEcCCccHHHHHHHHHhCCCCcCccceeeeccCCCCccccchhhh
Confidence            4433332223455543221   1122233455699999999999999887643211    11                  


Q ss_pred             --------------------------------------------eeHHHHH--HcCcEEEcCCeEEEEEeCCCCcEEEEE
Q 012165          235 --------------------------------------------RYEQLYQ--QNGVKFVKGASIKNLEAGSDGRVAAVK  268 (469)
Q Consensus       235 --------------------------------------------~~~~~l~--~~gV~~~~~~~v~~i~~~~~~~v~~v~  268 (469)
                                                                  .+++.+.  +..|.++.++++..++..++|++ .+.
T Consensus       237 e~F~P~y~dyfy~l~~~~r~~ll~~~~~~YkgI~~~ti~~Iy~~lY~~~l~~~~~~v~l~~~~ev~~~~~~G~g~~-~l~  315 (436)
T COG3486         237 EYFSPEYTDYFYGLPPEARDELLRKQRLLYKGISFDTIEEIYDLLYEQSLGGRKPDVRLLSLSEVQSVEPAGDGRY-RLT  315 (436)
T ss_pred             hhcCchhHHHHhcCCHHHHHHHHhhcCccccccCHHHHHHHHHHHHHHHhcCCCCCeeeccccceeeeecCCCceE-EEE
Confidence                                                        2222222  45788999999999997767753 343


Q ss_pred             cC-----CCCEEeCCEEEEccCCccCCc-hhhhcC--Cc-ccCCCEEeCCCCCCC-----CCceEEeccccc
Q 012165          269 LE-----DGSTIDADTIVIGIGAKPTVS-PFERVG--LN-SSVGGIQVDGQFRTR-----MPGIFAIGDVAA  326 (469)
Q Consensus       269 ~~-----~g~~i~~D~vi~a~G~~p~~~-~~~~~g--l~-~~~g~i~Vd~~~~t~-----~~~Vfa~GD~a~  326 (469)
                      +.     ..++++.|.||+|||++...+ |++.+.  +. +++|...|+..++..     .-.||+-|-+..
T Consensus       316 ~~~~~~~~~~t~~~D~vIlATGY~~~~P~fL~~l~d~l~~d~~g~l~I~~dY~v~~~~~~~~~ifvqn~e~h  387 (436)
T COG3486         316 LRHHETGELETVETDAVILATGYRRAVPSFLEGLADRLQWDDDGRLVIGRDYRVLWDGPGKGRIFVQNAELH  387 (436)
T ss_pred             EeeccCCCceEEEeeEEEEecccccCCchhhhhHHHhhcccccCCeEecCceeeecCCCCcceEEEeccccc
Confidence            32     235789999999999995544 666554  22 346789998876542     136999986654

>KOG1399 consensus Flavin-containing monooxygenase [Secondary metabolites biosynthesis, transport and catabolism]

Probab=99.62  E-value=1.1e-14  Score=144.62  Aligned_cols=235  Identities=18%  Similarity=0.239  Sum_probs=139.6

Q ss_pred             CCCCCcEEEEcCcHHHHHHHHHHHHcCCCCCcEEEEcCCCCCC--CCCC--------CCcccccCCCCCCCCCCCCCccc
Q 012165           48 ANENREFVIVGGGNAAGYAARTFVEHGMADGRLCIVSKEAYAP--YERP--------ALTKGYLFPLDKKPARLPGFHTC  117 (469)
Q Consensus        48 ~~~~~~vvIIGgG~AGl~aA~~L~~~g~~~~~V~vie~~~~~~--~~~~--------~l~~~~~~~~~~~~~~~~~~~~~  117 (469)
                      .++.++|+|||||+|||.+|+.|++.|+   +++++|+.+..+  |...        .+.+.+.....+....++.|...
T Consensus         3 ~~~~~~vaIIGAG~sGL~~ar~l~~~g~---~v~vfEr~~~iGGlW~y~~~~~~~~ss~Y~~l~tn~pKe~~~~~dfpf~   79 (448)
T KOG1399|consen    3 MMMSKDVAVIGAGPAGLAAARELLREGH---EVVVFERTDDIGGLWKYTENVEVVHSSVYKSLRTNLPKEMMGYSDFPFP   79 (448)
T ss_pred             cCCCCceEEECcchHHHHHHHHHHHCCC---CceEEEecCCccceEeecCcccccccchhhhhhccCChhhhcCCCCCCc
Confidence            3557899999999999999999999998   799999988654  1111        11111222222222222322211


Q ss_pred             cC-C-------CCCCCCHhHHHHCCc--EEEeCCcEEEEeCCC-c--EEEeCCC----eEEEeccEEeccCCCC-CcCCC
Q 012165          118 VG-S-------GGERQTPEWYKEKGI--EMIYQDPVTSIDIEK-Q--TLITNSG----KLLKYGSLIVATGCTA-SRFPE  179 (469)
Q Consensus       118 ~~-~-------~~~~~~~~~~~~~~i--~~~~~~~v~~id~~~-~--~v~~~~g----~~~~yd~lVlAtG~~~-~~~~~  179 (469)
                      .. .       +..+.+.++.++.++  .+.++++|..++... .  .|.+.++    ++.-||.|++|||-.. .++|.
T Consensus        80 ~~~~~~~p~~~e~~~YL~~yA~~F~l~~~i~f~~~v~~v~~~~~gkW~V~~~~~~~~~~~~ifd~VvVctGh~~~P~~P~  159 (448)
T KOG1399|consen   80 ERDPRYFPSHREVLEYLRDYAKHFDLLKMINFNTEVVRVDSIDKGKWRVTTKDNGTQIEEEIFDAVVVCTGHYVEPRIPQ  159 (448)
T ss_pred             ccCcccCCCHHHHHHHHHHHHHhcChhhheEecccEEEEeeccCCceeEEEecCCcceeEEEeeEEEEcccCcCCCCCCc
Confidence            11 0       111223344556665  467778888888765 2  4555443    4678999999999772 23566


Q ss_pred             CCCC---CcCcEEEecCHHHHHHHH-HhhhcCCeEEEEcCChHHHHHHHHHHhCCCeEeeeH-H--HHHH------cCcE
Q 012165          180 KIGG---YLPGVHYIRDVADADALI-SSLEKAKKVVVVGGGYIGMEVAAAAVGWKLDTTRYE-Q--LYQQ------NGVK  246 (469)
Q Consensus       180 ~~g~---~~~~v~~~~~~~~~~~~~-~~~~~~~~vvVvG~G~~g~e~A~~l~~~g~~v~~~~-~--~l~~------~gV~  246 (469)
                      +++.   ..+|-.    + ++...+ .....+++|+|||.|.+|+|++..++....++.... .  ....      .++.
T Consensus       160 ~~g~~~~~f~G~~----i-HS~~Yk~~e~f~~k~VlVIG~g~SG~DIs~d~~~~ak~v~~~~~~~~~~~~~~~~~~~~~~  234 (448)
T KOG1399|consen  160 IPGPGIESFKGKI----I-HSHDYKSPEKFRDKVVLVVGCGNSGMDISLDLLRVAKEVHLSVVSPKVHVEPPEILGENLW  234 (448)
T ss_pred             CCCCchhhcCCcc----e-ehhhccCcccccCceEEEECCCccHHHHHHHHHHhccCcceeeecccccccccceeecceE
Confidence            5552   233311    1 111111 223467999999999999999999877766554111 0  0111      1111


Q ss_pred             EEcCCeEEEEEeCCCCcEEEEEcCCCCEEeCCEEEEccCCccCCchhhhcC
Q 012165          247 FVKGASIKNLEAGSDGRVAAVKLEDGSTIDADTIVIGIGAKPTVSPFERVG  297 (469)
Q Consensus       247 ~~~~~~v~~i~~~~~~~v~~v~~~~g~~i~~D~vi~a~G~~p~~~~~~~~g  297 (469)
                      .+..  |..+.  +++   .+.+.++....+|.+|+|||..-...+++..+
T Consensus       235 ~~~~--i~~~~--e~~---~~~~~~~~~~~~D~ii~ctgy~y~fPfl~~~~  278 (448)
T KOG1399|consen  235 QVPS--IKSFT--EDG---SVFEKGGPVERVDRIIFCTGYKYKFPFLETLG  278 (448)
T ss_pred             Eccc--ccccc--Ccc---eEEEcCceeEEeeeEEEeeeeEeecceeccCC
Confidence            1111  33333  232   35566777889999999999998777776553

>PTZ00188 adrenodoxin reductase; Provisional

Probab=99.61  E-value=1.2e-14  Score=144.04  Aligned_cols=270  Identities=16%  Similarity=0.209  Sum_probs=149.7

Q ss_pred             CCCCcEEEEcCcHHHHHHHHHHH-HcCCCCCcEEEEcCCCCCCCCCCCCcccccCCCCCCCCCCCCCccccCCCCCCCCH
Q 012165           49 NENREFVIVGGGNAAGYAARTFV-EHGMADGRLCIVSKEAYAPYERPALTKGYLFPLDKKPARLPGFHTCVGSGGERQTP  127 (469)
Q Consensus        49 ~~~~~vvIIGgG~AGl~aA~~L~-~~g~~~~~V~vie~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  127 (469)
                      ...++|+||||||||++||.+|. +.|+   +|+|+|+.+.+..    +.. +-.++......     .+     ...+.
T Consensus        37 ~~~krVAIVGaGPAGlyaA~~Ll~~~g~---~VtlfEk~p~pgG----LvR-~GVaPdh~~~k-----~v-----~~~f~   98 (506)
T PTZ00188         37 AKPFKVGIIGAGPSALYCCKHLLKHERV---KVDIFEKLPNPYG----LIR-YGVAPDHIHVK-----NT-----YKTFD   98 (506)
T ss_pred             CCCCEEEEECCcHHHHHHHHHHHHhcCC---eEEEEecCCCCcc----EEE-EeCCCCCccHH-----HH-----HHHHH
Confidence            45679999999999999999876 4565   7999999987631    111 11111111000     00     01112


Q ss_pred             hHHHHCCcEEEeCCcEEEEeCCCcEEEeCCCeEEEeccEEeccCCCCCcCCC--------CC-CCC----cCcEEEecCH
Q 012165          128 EWYKEKGIEMIYQDPVTSIDIEKQTLITNSGKLLKYGSLIVATGCTASRFPE--------KI-GGY----LPGVHYIRDV  194 (469)
Q Consensus       128 ~~~~~~~i~~~~~~~v~~id~~~~~v~~~~g~~~~yd~lVlAtG~~~~~~~~--------~~-g~~----~~~v~~~~~~  194 (469)
                      ..+...+++++.+..+      +..++.++=. -.||.||+|||+.+..+|.        +. |.+    ++|++..+++
T Consensus        99 ~~~~~~~v~f~gnv~V------G~Dvt~eeL~-~~YDAVIlAtGA~~l~ipi~~~~~~~~~~GGe~~~~~l~Gvf~A~df  171 (506)
T PTZ00188         99 PVFLSPNYRFFGNVHV------GVDLKMEELR-NHYNCVIFCCGASEVSIPIGQQDEDKAVSGGETNPRKQNGIFHARDL  171 (506)
T ss_pred             HHHhhCCeEEEeeeEe------cCccCHHHHH-hcCCEEEEEcCCCCCCCCcccccceeeeccccccccccCcEEehheE
Confidence            2344567777654332      1122222212 3799999999998654331        00 333    4566543322


Q ss_pred             -------HHHH---HHHHh---hhcCCeEEEEcCChHHHHHHHHHHhC--------------------CCe-Ee------
Q 012165          195 -------ADAD---ALISS---LEKAKKVVVVGGGYIGMEVAAAAVGW--------------------KLD-TT------  234 (469)
Q Consensus       195 -------~~~~---~~~~~---~~~~~~vvVvG~G~~g~e~A~~l~~~--------------------g~~-v~------  234 (469)
                             .+..   .....   +...++++|||.|.+++++|..|.+-                    .++ |.      
T Consensus       172 V~WYNg~p~~~~~~~~~ayL~p~~~~~~vvVIG~GNVAlDvARiL~~~~d~L~~TDI~~~aL~~L~~s~v~~V~ivgRRG  251 (506)
T PTZ00188        172 IYFYNNMYNDVRCKAVDNYLNSFENFTTSIIIGNGNVSLDIARILIKSPDDLSKTDISSDYLKVIKRHNIKHIYIVGRRG  251 (506)
T ss_pred             EEeecCCCCccccccccccccccCCCCcEEEECCCchHHHHHHHHccCHHHhhcCCCcHHHHHHHHhCCCcEEEEEEecC
Confidence                   1110   11111   11457899999999999999976421                    111 11      


Q ss_pred             ---------eeHHHHH-------------------------------------------------------HcCcEEEcC
Q 012165          235 ---------RYEQLYQ-------------------------------------------------------QNGVKFVKG  250 (469)
Q Consensus       235 ---------~~~~~l~-------------------------------------------------------~~gV~~~~~  250 (469)
                               .+.++.+                                                       .+-+.+++.
T Consensus       252 p~qaaFT~kElrEL~~l~~~~v~v~~~d~~~~~~~~~~~~~~r~~~r~~~~~~~~l~~~~~~~~~~~~~~~~r~i~l~F~  331 (506)
T PTZ00188        252 FWQSSFTNAELRELISLENTKVILSKKNYDLCCHLKSDEENTNMKKRQHEIFQKMVKNYEEVEKNKEFYKTYKIIEFIFY  331 (506)
T ss_pred             HHHhCCCHHHHHHHhcCCCCeEEEChhhhcccccccchhhhhhhhhhhhhHHHHHHHHHHhhccCccCCCCceEEEEEcc
Confidence                     0001110                                                       123445556


Q ss_pred             CeEEEEEeCCCCcEEEEEcC-----------CC--CEEeCCEEEEccCCccCCchhhhcCCcccCCCEEeCCCCCC--CC
Q 012165          251 ASIKNLEAGSDGRVAAVKLE-----------DG--STIDADTIVIGIGAKPTVSPFERVGLNSSVGGIQVDGQFRT--RM  315 (469)
Q Consensus       251 ~~v~~i~~~~~~~v~~v~~~-----------~g--~~i~~D~vi~a~G~~p~~~~~~~~gl~~~~g~i~Vd~~~~t--~~  315 (469)
                      ..+.+|.. .++++.++++.           .|  +.++||+|+-++|++...  +.+  +..| ..+... ..+.  ..
T Consensus       332 ~sP~ei~~-~~~~v~~v~~~~n~l~~~~~~~tg~~~~~~~~lV~rsiGY~g~p--~~g--~pFd-~~~~n~-~grv~~~~  404 (506)
T PTZ00188        332 FEIRQIRP-IDGAMKNVELELNKNVPMSFSSFKENKVLVTPLVIFATGFKKSN--FAE--NLYN-QSVQMF-KEDIGQHK  404 (506)
T ss_pred             CCceEEEC-CCCcEeEEEEEEeecccCccCCCCeeEEEEcCEEEEcccccCCC--CCC--CCcc-ccCCCC-CCcccCCC
Confidence            66667763 24567777665           23  369999999999998642  222  2333 122221 1222  36


Q ss_pred             CceEEeccccccCCccCCcccccchHHHHHHHHHHHHHHH
Q 012165          316 PGIFAIGDVAAFPLKMYDRTARVEHVDHARQSAQHCIKAL  355 (469)
Q Consensus       316 ~~Vfa~GD~a~~~~~~~~~~~~~~~~~~A~~~a~~~a~~i  355 (469)
                      |++|++|-+-..|....|.     ....|...+..+.+.+
T Consensus       405 ~g~Y~~GWiKrGP~GvIgt-----n~~da~~t~~~v~~d~  439 (506)
T PTZ00188        405 FAIFKAGWFDKGPKGNIAS-----QILNSKNSTHLVLNFL  439 (506)
T ss_pred             CCcEEeeecCcCCCceecc-----CcccHHHHHHHHHHHH
Confidence            9999999999888766544     3334666666555554

>COG4529 Uncharacterized protein conserved in bacteria [Function unknown]

Probab=99.50  E-value=2.1e-12  Score=125.86  Aligned_cols=296  Identities=19%  Similarity=0.260  Sum_probs=169.1

Q ss_pred             CCcEEEEcCcHHHHHHHHHHHHcCCCCCcEEEEcCCCCC----CCCCCCCcccccCCCCCCCCCCCC----CccccCCC-
Q 012165           51 NREFVIVGGGNAAGYAARTFVEHGMADGRLCIVSKEAYA----PYERPALTKGYLFPLDKKPARLPG----FHTCVGSG-  121 (469)
Q Consensus        51 ~~~vvIIGgG~AGl~aA~~L~~~g~~~~~V~vie~~~~~----~~~~~~l~~~~~~~~~~~~~~~~~----~~~~~~~~-  121 (469)
                      +++|+|||||++|+..|.+|.+.--+...|.|+|+.+.+    +|+.-.-.+....+........|.    |..+.... 
T Consensus         1 ~~~VAIIGgG~sGi~~A~~Ll~~~~~~~~Isi~e~~~~~G~GiaYs~~~p~~~lNv~a~~mS~~~pD~p~~F~~WL~~~~   80 (474)
T COG4529           1 MFKVAIIGGGFSGIYMAAHLLKSPRPSGLISIFEPRPNFGQGIAYSTEEPEHLLNVPAARMSAFAPDIPQDFVRWLQKQL   80 (474)
T ss_pred             CceEEEECCchHHHHHHHHHHhCCCCCCceEEeccccccCCCccCCCCCchhhhccccccccccCCCCchHHHHHHHhcc
Confidence            478999999999999999999975444559999998865    354211011000111111111111    11111000 


Q ss_pred             -------------------------CCCCCHhHHHHCC---cEEEeCCcEEEEeCC----CcEEEeCCCeEEEeccEEec
Q 012165          122 -------------------------GERQTPEWYKEKG---IEMIYQDPVTSIDIE----KQTLITNSGKLLKYGSLIVA  169 (469)
Q Consensus       122 -------------------------~~~~~~~~~~~~~---i~~~~~~~v~~id~~----~~~v~~~~g~~~~yd~lVlA  169 (469)
                                               .......++++..   +.++. ++++++...    ...++..+|....+|-+|+|
T Consensus        81 ~~~~d~~~~~~d~~~y~pR~lfG~Yl~e~l~~l~~~~~~~~v~~~~-~~a~~~~~~~n~~~~~~~~~~g~~~~ad~~Vla  159 (474)
T COG4529          81 QRYRDPEDINHDGQAYPPRRLFGEYLREQLAALLARGRQTRVRTIR-EEATSVRQDTNAGGYLVTTADGPSEIADIIVLA  159 (474)
T ss_pred             cccCChhhcCCccccccchhHHHHHHHHHHHHHHHhcCccceeEEe-eeeecceeccCCceEEEecCCCCeeeeeEEEEe
Confidence                                     0000111122222   55554 456666554    23677788998999999999


Q ss_pred             cCCCCCcCCCCCCCCcCc-EEEecCHHHHHHHHHhhhcCCeEEEEcCChHHHHHHHHHHhCCCeEe--------------
Q 012165          170 TGCTASRFPEKIGGYLPG-VHYIRDVADADALISSLEKAKKVVVVGGGYIGMEVAAAAVGWKLDTT--------------  234 (469)
Q Consensus       170 tG~~~~~~~~~~g~~~~~-v~~~~~~~~~~~~~~~~~~~~~vvVvG~G~~g~e~A~~l~~~g~~v~--------------  234 (469)
                      ||..+...+. -..++++ ..+..+.+....+ ..+....+|+|+|+|.+.++....|..+|.+-.              
T Consensus       160 tgh~~~~~~~-~~~~~~~~~~~ia~~~~~~~l-d~v~~~drVli~GsgLt~~D~v~~l~~~gh~g~It~iSRrGl~~~~h  237 (474)
T COG4529         160 TGHSAPPADP-AARDLKGSPRLIADPYPANAL-DGVDADDRVLIVGSGLTSIDQVLVLRRRGHKGPITAISRRGLVPRPH  237 (474)
T ss_pred             ccCCCCCcch-hhhccCCCcceeccccCCccc-ccccCCCceEEecCCchhHHHHHHHhccCCccceEEEeccccccCCC
Confidence            9976542222 1122221 1133333333332 234556679999999999999999988765432              


Q ss_pred             --------------------------------------------------------------------------------
Q 012165          235 --------------------------------------------------------------------------------  234 (469)
Q Consensus       235 --------------------------------------------------------------------------------  234 (469)
                                                                                                      
T Consensus       238 ~~~~~~p~~d~~~~p~~s~~~L~~~vR~~l~e~e~~g~~w~~v~D~lR~~~~~~wq~l~~~er~rf~rH~~~~~dvHr~R  317 (474)
T COG4529         238 IPVPYEPLGDFLSDPANSALSLLSIVRLLLREAEEAGQDWRDVVDGLRPQGQWIWQNLPAVERRRFERHLRPIWDVHRFR  317 (474)
T ss_pred             CCCCccccccccchhhhhhhhHHHHHHHHHHHHHHhCCCHHHHHHhhhhhhhHHHHhCCHHHHHHHHHhcccHHHHHHhh
Confidence                                                                                            


Q ss_pred             -------eeHHHHHHcCcEEEcCCeEEEEEeCCCCcEEEEEcC--CC-CEEeCCEEEEccCCccCCc-----hhh---hc
Q 012165          235 -------RYEQLYQQNGVKFVKGASIKNLEAGSDGRVAAVKLE--DG-STIDADTIVIGIGAKPTVS-----PFE---RV  296 (469)
Q Consensus       235 -------~~~~~l~~~gV~~~~~~~v~~i~~~~~~~v~~v~~~--~g-~~i~~D~vi~a~G~~p~~~-----~~~---~~  296 (469)
                             ...+.+.+.-++++-+ ++..|...+++....+...  +. +++++|.||.|+|..+...     +|.   +.
T Consensus       318 ~a~~v~~~~~~~~a~G~~~l~ag-~~~~i~~~~eg~~v~~r~rg~~~~~~l~~~~VIn~~g~~~~~~~~s~~~L~sl~~~  396 (474)
T COG4529         318 LAPAVQAAVPQLLAEGLLELVAG-RVVSIDREGEGRAVTYRERGKQHEEELDVDAVINTTGPAHDNSLSSDPFLRSLGEN  396 (474)
T ss_pred             hhHHHHhhhhHHhhcchhheecC-ceeecccccCCceEEeeccccCccceeeeeEEEEcCCcCcCCCccchHHHHHHHhC
Confidence                   2233344444455544 5666665555532223222  22 5789999999999876532     333   33


Q ss_pred             CCcc-c--CCCEEeCCCCCC------CCCceEEeccccccCCccCCcccccchHHHHHHHHHHHHHHHh
Q 012165          297 GLNS-S--VGGIQVDGQFRT------RMPGIFAIGDVAAFPLKMYDRTARVEHVDHARQSAQHCIKALL  356 (469)
Q Consensus       297 gl~~-~--~g~i~Vd~~~~t------~~~~Vfa~GD~a~~~~~~~~~~~~~~~~~~A~~~a~~~a~~i~  356 (469)
                      |+.. +  ..|+.|+++.+.      ..++.||+|..+....      +.+..+..-..|+..+|..++
T Consensus       397 Gl~rpd~~~lGl~v~~~~~v~~~~g~~~~~~fa~Gplt~G~f------~ei~~vP~v~~qa~~~A~~l~  459 (474)
T COG4529         397 GLARPDPPGLGLDVSDDSEVLGEDGERVTGLFAAGPLTRGTF------WEIDGVPDVRVQAARLAAQLA  459 (474)
T ss_pred             CccccCCCCCceeeCCCCcccCCCCccccCceeeccccCCch------hhhccChHHHHHHHHHHHHHh
Confidence            4432 2  467888887664      4689999998886431      223445556667777777776

>PRK05329 anaerobic glycerol-3-phosphate dehydrogenase subunit B; Validated

Probab=99.47  E-value=8.8e-13  Score=131.13  Aligned_cols=142  Identities=16%  Similarity=0.171  Sum_probs=97.0

Q ss_pred             EEEcCChHHHHHH-HHHH----hCCCeEe----------------eeHHHHHHcCcEEEcCCeEEEEEeCCCCcEEEEEc
Q 012165          211 VVVGGGYIGMEVA-AAAV----GWKLDTT----------------RYEQLYQQNGVKFVKGASIKNLEAGSDGRVAAVKL  269 (469)
Q Consensus       211 vVvG~G~~g~e~A-~~l~----~~g~~v~----------------~~~~~l~~~gV~~~~~~~v~~i~~~~~~~v~~v~~  269 (469)
                      .|++.+.+|+|.+ ..+.    .+|.+++                .+.+.+++.|++++.++.|.+++.. ++.+..+..
T Consensus       219 ~V~~PavIGle~a~~v~~~L~~~LG~~V~~vp~~ppslpG~rL~~aL~~~l~~~Gv~I~~g~~V~~v~~~-~~~V~~v~~  297 (422)
T PRK05329        219 AVLLPAVLGLDDDAAVLAELEEALGCPVFELPTLPPSVPGLRLQNALRRAFERLGGRIMPGDEVLGAEFE-GGRVTAVWT  297 (422)
T ss_pred             EEEECceecCCChHHHHHHHHHHHCCCEEEeCCCCCCCchHHHHHHHHHHHHhCCCEEEeCCEEEEEEEe-CCEEEEEEe
Confidence            6788999999999 6554    4688887                5677788899999999999999864 455555555


Q ss_pred             CCCC--EEeCCEEEEccCCccCCchh-----------------------------------hhcCCcccCCCEEeCCCCC
Q 012165          270 EDGS--TIDADTIVIGIGAKPTVSPF-----------------------------------ERVGLNSSVGGIQVDGQFR  312 (469)
Q Consensus       270 ~~g~--~i~~D~vi~a~G~~p~~~~~-----------------------------------~~~gl~~~~g~i~Vd~~~~  312 (469)
                      .+|+  .+++|.+|+|+|..+...+.                                   ..+|+..|.....+|...+
T Consensus       298 ~~g~~~~i~AD~VVLAtGrf~s~GL~a~~~~i~Epif~l~v~~~~~r~~w~~~~~~~~~p~~~~GV~~d~~~~p~~~~g~  377 (422)
T PRK05329        298 RNHGDIPLRARHFVLATGSFFSGGLVAERDGIREPIFGLDVLQPADRADWYQRDFFAPHPFLQFGVATDATLRPLDSQGG  377 (422)
T ss_pred             eCCceEEEECCEEEEeCCCcccCceeccCCccccccCCCCCCCCCchhhhhhhhhccCCchhhcCceECCCcCcccCCCC
Confidence            5553  58999999999987664331                                   1223333333333344444


Q ss_pred             CCCCceEEeccccccCCccCCcccccchHHHHHHHHHHHHHHHhc
Q 012165          313 TRMPGIFAIGDVAAFPLKMYDRTARVEHVDHARQSAQHCIKALLS  357 (469)
Q Consensus       313 t~~~~Vfa~GD~a~~~~~~~~~~~~~~~~~~A~~~a~~~a~~i~~  357 (469)
                      +..+|+||+|++...+++..-..    --..|...|-+++++|..
T Consensus       378 ~~~~nl~a~G~vl~g~d~~~~~~----g~Gva~~ta~~a~~~~~~  418 (422)
T PRK05329        378 PVIENLYAAGAVLGGYDPIREGC----GSGVALATALHAAEQIAE  418 (422)
T ss_pred             eeccceEEeeehhcCCchHHhCC----CchhHHHHHHHHHHHHHH
Confidence            56899999999999876432111    112466777777777764

>PRK09897 hypothetical protein; Provisional

Probab=99.31  E-value=2e-10  Score=117.58  Aligned_cols=170  Identities=17%  Similarity=0.148  Sum_probs=96.8

Q ss_pred             CCcEEEEcCcHHHHHHHHHHHHcCCCCCcEEEEcCCCCCC----CCCCCCcccccCCC--CCCCCCCCCCccccC-----
Q 012165           51 NREFVIVGGGNAAGYAARTFVEHGMADGRLCIVSKEAYAP----YERPALTKGYLFPL--DKKPARLPGFHTCVG-----  119 (469)
Q Consensus        51 ~~~vvIIGgG~AGl~aA~~L~~~g~~~~~V~vie~~~~~~----~~~~~l~~~~~~~~--~~~~~~~~~~~~~~~-----  119 (469)
                      |++|+|||||++|+++|..|.+.+. ..+|+|+|+....+    |....-++.++.+.  ...+...+.|..+..     
T Consensus         1 m~~IAIIGgGp~Gl~~a~~L~~~~~-~l~V~lfEp~~~~G~G~ays~~~~~~~L~~N~~~~~~p~~~~~f~~Wl~~~~~~   79 (534)
T PRK09897          1 MKKIAIVGAGPTGIYTFFSLLQQQT-PLSISIFEQADEAGVGMPYSDEENSKMMLANIASIEIPPIYCTYLEWLQKQEDS   79 (534)
T ss_pred             CCeEEEECCcHHHHHHHHHHHhcCC-CCcEEEEecCCCCCcceeecCCCChHHHHhcccccccCCChHHHHHHhhhhhHH
Confidence            4689999999999999999998763 56899999976443    43211111111100  000000011111100     


Q ss_pred             ---------------CCCCCC-C----H-------hHHHHCC--cEEEeCCcEEEEeCCCc--EEEeCC-CeEEEeccEE
Q 012165          120 ---------------SGGERQ-T----P-------EWYKEKG--IEMIYQDPVTSIDIEKQ--TLITNS-GKLLKYGSLI  167 (469)
Q Consensus       120 ---------------~~~~~~-~----~-------~~~~~~~--i~~~~~~~v~~id~~~~--~v~~~~-g~~~~yd~lV  167 (469)
                                     ....+. +    .       +.+...|  +.++.+++|++++..+.  .|++.+ +..+.+|+||
T Consensus        80 ~~~~~g~~~~~l~~~~f~PR~l~G~YL~~~f~~l~~~a~~~G~~V~v~~~~~V~~I~~~~~g~~V~t~~gg~~i~aD~VV  159 (534)
T PRK09897         80 HLQRYGVKKETLHDRQFLPRILLGEYFRDQFLRLVDQARQQKFAVAVYESCQVTDLQITNAGVMLATNQDLPSETFDLAV  159 (534)
T ss_pred             HHHhcCCcceeecCCccCCeecchHHHHHHHHHHHHHHHHcCCeEEEEECCEEEEEEEeCCEEEEEECCCCeEEEcCEEE
Confidence                           000000 0    1       1122344  67777789999987654  455544 4678999999


Q ss_pred             eccCCCCCcCCCCCCCCcCcEEEecCHHHHHHHHHhhhcCCeEEEEcCChHHHHHHHHHHhC
Q 012165          168 VATGCTASRFPEKIGGYLPGVHYIRDVADADALISSLEKAKKVVVVGGGYIGMEVAAAAVGW  229 (469)
Q Consensus       168 lAtG~~~~~~~~~~g~~~~~v~~~~~~~~~~~~~~~~~~~~~vvVvG~G~~g~e~A~~l~~~  229 (469)
                      +|||..+...+.  +  .+  .++.+.++... .... .+.+|+|+|.|.++++++..|..+
T Consensus       160 LAtGh~~p~~~~--~--~~--~yi~~pw~~~~-~~~i-~~~~V~I~GtGLt~iD~v~~Lt~~  213 (534)
T PRK09897        160 IATGHVWPDEEE--A--TR--TYFPSPWSGLM-EAKV-DACNVGIMGTSLSGLDAAMAVAIQ  213 (534)
T ss_pred             ECCCCCCCCCCh--h--hc--cccCCCCcchh-hcCC-CCCeEEEECCCHHHHHHHHHHHhc
Confidence            999975422211  1  11  23333343221 1222 378999999999999999888755

>COG2081 Predicted flavoproteins [General function prediction only]

Probab=99.15  E-value=1.2e-10  Score=111.09  Aligned_cols=120  Identities=27%  Similarity=0.292  Sum_probs=77.7

Q ss_pred             CCCCcEEEEcCcHHHHHHHHHHHHcCCCCCcEEEEcCCCCCC-------CCCCCCcccccCCCCCCCCCCCC--------
Q 012165           49 NENREFVIVGGGNAAGYAARTFVEHGMADGRLCIVSKEAYAP-------YERPALTKGYLFPLDKKPARLPG--------  113 (469)
Q Consensus        49 ~~~~~vvIIGgG~AGl~aA~~L~~~g~~~~~V~vie~~~~~~-------~~~~~l~~~~~~~~~~~~~~~~~--------  113 (469)
                      ++.+||+|||||+|||.||..+.++|.   +|+|+|+.+.++       --|+.+.+...  ......++|+        
T Consensus         1 ~~~~dviIIGgGpAGlMaA~~aa~~G~---~V~lid~~~k~GrKil~sGgGrCN~Tn~~~--~~~~ls~~p~~~~fl~sa   75 (408)
T COG2081           1 MERFDVIIIGGGPAGLMAAISAAKAGR---RVLLIDKGPKLGRKILMSGGGRCNFTNSEA--PDEFLSRNPGNGHFLKSA   75 (408)
T ss_pred             CCcceEEEECCCHHHHHHHHHHhhcCC---EEEEEecCccccceeEecCCCCcccccccc--HHHHHHhCCCcchHHHHH
Confidence            356899999999999999999999987   899999988542       11111111000  0000001110        


Q ss_pred             -----------------Cc---cccCCCCC---------CCCHhHHHHCCcEEEeCCcEEEEeCCC--cEEEeCCCeEEE
Q 012165          114 -----------------FH---TCVGSGGE---------RQTPEWYKEKGIEMIYQDPVTSIDIEK--QTLITNSGKLLK  162 (469)
Q Consensus       114 -----------------~~---~~~~~~~~---------~~~~~~~~~~~i~~~~~~~v~~id~~~--~~v~~~~g~~~~  162 (469)
                                       ..   ...+..+.         +.....+++.|++++++++|.+++.++  ..+.+.+|+++.
T Consensus        76 l~~ft~~d~i~~~e~~Gi~~~e~~~Gr~Fp~sdkA~~Iv~~ll~~~~~~gV~i~~~~~v~~v~~~~~~f~l~t~~g~~i~  155 (408)
T COG2081          76 LARFTPEDFIDWVEGLGIALKEEDLGRMFPDSDKASPIVDALLKELEALGVTIRTRSRVSSVEKDDSGFRLDTSSGETVK  155 (408)
T ss_pred             HHhCCHHHHHHHHHhcCCeeEEccCceecCCccchHHHHHHHHHHHHHcCcEEEecceEEeEEecCceEEEEcCCCCEEE
Confidence                             00   00000001         111233567899999999999999885  688899998899


Q ss_pred             eccEEeccCCC
Q 012165          163 YGSLIVATGCT  173 (469)
Q Consensus       163 yd~lVlAtG~~  173 (469)
                      +|.||||||..
T Consensus       156 ~d~lilAtGG~  166 (408)
T COG2081         156 CDSLILATGGK  166 (408)
T ss_pred             ccEEEEecCCc
Confidence            99999999943

>TIGR03378 glycerol3P_GlpB glycerol-3-phosphate dehydrogenase, anaerobic, B subunit

Probab=98.97  E-value=3.4e-08  Score=97.38  Aligned_cols=116  Identities=20%  Similarity=0.292  Sum_probs=79.8

Q ss_pred             eeHHHHHHcCcEEEcCCeEEEEEeCCCCcEEEEEcCCC--CEEeCCEEEEccCCccCCchhhhc--------CCcc----
Q 012165          235 RYEQLYQQNGVKFVKGASIKNLEAGSDGRVAAVKLEDG--STIDADTIVIGIGAKPTVSPFERV--------GLNS----  300 (469)
Q Consensus       235 ~~~~~l~~~gV~~~~~~~v~~i~~~~~~~v~~v~~~~g--~~i~~D~vi~a~G~~p~~~~~~~~--------gl~~----  300 (469)
                      .+.+.+++.|++++.+..|.++... ++++..+.+.++  ..+.+|.+|+|+|.--...++++.        +++.    
T Consensus       268 aL~~~~~~~Gg~il~g~~V~~i~~~-~~~v~~V~t~~g~~~~l~AD~vVLAaGaw~S~gL~a~l~~i~Epif~L~v~~~~  346 (419)
T TIGR03378       268 ALKHRFEQLGGVMLPGDRVLRAEFE-GNRVTRIHTRNHRDIPLRADHFVLASGSFFSNGLVAEFDKIYEPIFGLDVLQLP  346 (419)
T ss_pred             HHHHHHHHCCCEEEECcEEEEEEee-CCeEEEEEecCCccceEECCEEEEccCCCcCHHHHhhcCceeeeccCCCcCCCc
Confidence            5677888999999999999998854 566666776776  479999999999987222332221        1111    


Q ss_pred             ----------------cCCCEEeCCCCCC-----CCCceEEeccccccCCccCCcccccchHHHHHHHHHHHHHHH
Q 012165          301 ----------------SVGGIQVDGQFRT-----RMPGIFAIGDVAAFPLKMYDRTARVEHVDHARQSAQHCIKAL  355 (469)
Q Consensus       301 ----------------~~g~i~Vd~~~~t-----~~~~Vfa~GD~a~~~~~~~~~~~~~~~~~~A~~~a~~~a~~i  355 (469)
                                      ..-||.+|+++|.     .++|+||+|-+....++..-..   . -..|+..|-++|+.|
T Consensus       347 ~r~~W~~~~ff~~~p~~~~GV~~d~~lrp~~~g~~~~Nl~a~G~vL~G~d~~~~gc---G-~GVai~Ta~~aa~~i  418 (419)
T TIGR03378       347 DRDQWYQHRFFAPHPFMQFGVKTDAQLRPSRGGQTIENLYAIGAVLGGYDPIFEGC---G-SGVAVSTALHAAEQI  418 (419)
T ss_pred             chhhhcchhhcCCChhhhcCceEccccCccCCCcccccceEechhhcCCChHhcCC---C-chhHHHHHHHHHHhh
Confidence                            1136889999983     3899999999998766432110   0 123677777777766

Members of this protein family are the B subunit, product of the glpB gene, of a three-subunit, membrane-anchored, FAD-dependent anaerobic glycerol-3-phosphate dehydrogenase.

>PF14759 Reductase_C: Reductase C-terminal; PDB: 3FG2_P 3LXD_A 2YVG_A 2GR1_A 2GQW_A 2GR3_A 2YVF_A 1F3P_A 2GR0_A 2GR2_A

Probab=98.94  E-value=7.6e-09  Score=79.05  Aligned_cols=79  Identities=23%  Similarity=0.370  Sum_probs=63.5

Q ss_pred             ceeeecccccCCCcceeeEEeecCCC--cEEEEccCC-CcEEEEEEeCCEEEEEEeecCChHHhHHHHHHHhCCCCCChh
Q 012165          368 YFYSRVFEYEGSPRKVWWQFFGDNVG--ETIEIGNFD-PKIATFWIDSGKLKGVLVESGSPEEFQLLPTLARSQPFVDKA  444 (469)
Q Consensus       368 ~~~~~~~~~~g~~~~~~~~~~G~~~~--~~~~~~~~~-~~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~~~~~~  444 (469)
                      ||||+||+..       +|++|.+..  +.+.+++.+ .++..+|+++|+++|++. +|.+.++..++++++.+..++++
T Consensus         1 ~FWSdQ~~~~-------iq~~G~~~~~~~~v~rg~~~~~~~~~~y~~~g~lva~~~-vn~~~~~~~~rrli~~~~~~~~~   72 (85)
T PF14759_consen    1 WFWSDQYGVR-------IQIAGLPGGADEVVVRGDPESGKFVAFYLRDGRLVAAVS-VNRPRDLRAARRLIAAGARVDPA   72 (85)
T ss_dssp             EEEEEETTEE-------EEEEE-STTSSEEEEEEETTTTEEEEEEEETTEEEEEEE-ES-HHHHHHHHHHHHTT-B--HH
T ss_pred             CeecccCCCe-------EEEEECCCCCCEEEEEccCCCCcEEEEEEcCCEEEEEEe-cCCHHHHHHHHHHHHCCCCcCHH
Confidence            7999999865       999998654  677888876 689999999999999995 89999999999999999999999


Q ss_pred             hhcCCCcHHH
Q 012165          445 KLQQASSVEE  454 (469)
Q Consensus       445 ~~~~~~~~~~  454 (469)
                      .+.++..-..
T Consensus        73 ~l~d~~~~L~   82 (85)
T PF14759_consen   73 RLADPSVDLR   82 (85)
T ss_dssp             HHHSTTSHHH
T ss_pred             HhcCCCCChH
Confidence            9887755433

...

>PF00070 Pyr_redox: Pyridine nucleotide-disulphide oxidoreductase; InterPro: IPR001327 FAD flavoproteins belonging to the family of pyridine nucleotide-disulphide oxidoreductases (glutathione reductase, trypanothione reductase, lipoamide dehydrogenase, mercuric reductase, thioredoxin reductase, alkyl hydroperoxide reductase) share sequence similarity with a number of other flavoprotein oxidoreductases, in particular with ferredoxin-NAD+ reductases involved in oxidative metabolism of a variety of hydrocarbons (rubredoxin reductase, putidaredoxin reductase, terpredoxin reductase, ferredoxin-NAD+ reductase components of benzene 1,2-dioxygenase, toluene 1,2-dioxygenase, chlorobenzene dioxygenase, biphenyl dioxygenase), NADH oxidase and NADH peroxidase [, , ]

Probab=98.93  E-value=4.2e-09  Score=79.87  Aligned_cols=62  Identities=40%  Similarity=0.705  Sum_probs=56.4

Q ss_pred             eEEEEcCChHHHHHHHHHHhCCCeEe------------------eeHHHHHHcCcEEEcCCeEEEEEeCCCCcEEEEEcC
Q 012165          209 KVVVVGGGYIGMEVAAAAVGWKLDTT------------------RYEQLYQQNGVKFVKGASIKNLEAGSDGRVAAVKLE  270 (469)
Q Consensus       209 ~vvVvG~G~~g~e~A~~l~~~g~~v~------------------~~~~~l~~~gV~~~~~~~v~~i~~~~~~~v~~v~~~  270 (469)
                      +++|||||++|+|+|..|++++.+++                  .+.+.+++.||++++++.+++++.++++ +. |+++
T Consensus         1 ~vvViGgG~ig~E~A~~l~~~g~~vtli~~~~~~~~~~~~~~~~~~~~~l~~~gV~v~~~~~v~~i~~~~~~-~~-V~~~   78 (80)
T PF00070_consen    1 RVVVIGGGFIGIELAEALAELGKEVTLIERSDRLLPGFDPDAAKILEEYLRKRGVEVHTNTKVKEIEKDGDG-VE-VTLE   78 (80)
T ss_dssp             EEEEESSSHHHHHHHHHHHHTTSEEEEEESSSSSSTTSSHHHHHHHHHHHHHTTEEEEESEEEEEEEEETTS-EE-EEEE
T ss_pred             CEEEECcCHHHHHHHHHHHHhCcEEEEEeccchhhhhcCHHHHHHHHHHHHHCCCEEEeCCEEEEEEEeCCE-EE-EEEe
Confidence            68999999999999999999999998                  5678899999999999999999987777 66 8988


Q ss_pred             CC
Q 012165          271 DG  272 (469)
Q Consensus       271 ~g  272 (469)
                      ||
T Consensus        79 ~g   80 (80)
T PF00070_consen   79 DG   80 (80)
T ss_dssp             TS
T ss_pred             cC
Confidence            86

Comparison of the crystal structures of human glutathione reductase and Escherichia coli thioredoxin reductase reveals different locations of their active sites, suggesting that the enzymes diverged from an ancestral FAD/NAD(P)H reductase and acquired their disulphide reductase activities independently []. Despite functional similarities, oxidoreductases of this family show no sequence similarity with adrenodoxin reductases [] and flavoprotein pyridine nucleotide cytochrome reductases (FPNCR) []. Assuming that disulphide reductase activity emerged later, during divergent evolution, the family can be referred to as FAD-dependent pyridine nucleotide reductases, FADPNR. To date, 3D structures of glutathione reductase [], thioredoxin reductase [], mercuric reductase [], lipoamide dehydrogenase [], trypanothione reductase [] and NADH peroxidase [] have been solved. The enzymes share similar tertiary structures based on a doubly-wound alpha/beta fold, but the relative orientations of their FAD- and NAD(P)H-binding domains may vary significantly. By contrast with the FPNCR family, the folds of the FAD- and NAD(P)H-binding domains are similar, suggesting that the domains evolved by gene duplication []. This entry describes a small NADH binding domain within a larger FAD binding domain described by IPR023753 from INTERPRO. It is found in both class I and class II oxidoreductases. ; GO: 0016491 oxidoreductase activity, 0050660 flavin adenine dinucleotide binding, 0055114 oxidation-reduction process; PDB: 1ZKQ_A 3DGZ_A 1ZDL_A 2R9Z_B 2RAB_A 2A87_B 1M6I_A 2YVG_A 2GR1_A 2GQW_A ....

>COG0579 Predicted dehydrogenase [General function prediction only]

Probab=98.90  E-value=8.7e-09  Score=101.53  Aligned_cols=209  Identities=21%  Similarity=0.276  Sum_probs=114.9

Q ss_pred             CCCCcEEEEcCcHHHHHHHHHHHHcCCCCCcEEEEcCCCCCCCCCCCCcccccCCCC-CCCCCCCCCccccCCCCCCCCH
Q 012165           49 NENREFVIVGGGNAAGYAARTFVEHGMADGRLCIVSKEAYAPYERPALTKGYLFPLD-KKPARLPGFHTCVGSGGERQTP  127 (469)
Q Consensus        49 ~~~~~vvIIGgG~AGl~aA~~L~~~g~~~~~V~vie~~~~~~~~~~~l~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~  127 (469)
                      ++++||+|||||.-|+++|.+|+++.. +.+|+|+|++.....+...-..+.....- ..+..+   .............
T Consensus         1 ~~~~DvvIIGgGI~G~a~a~~Ls~~~p-~~~V~llEk~~~~a~~sS~~NSgviHag~~y~p~sl---ka~l~~~g~~~~~   76 (429)
T COG0579           1 MMDYDVVIIGGGIMGAATAYELSEYEP-DLSVALLEKEDGVAQESSSNNSGVIHAGLYYTPGSL---KAKLCVAGNINEF   76 (429)
T ss_pred             CCceeEEEECCcHHHHHHHHHHHHhCC-CceEEEEEccCccccccccCcccceeccccCCCcch---hhHHHHHHHHHHH
Confidence            356899999999999999999999984 67999999998875543322111111100 000000   0000000000113


Q ss_pred             hHHHHCCcEEEeCCcEEEEeCCCcEEEeCCCeEEEeccEEeccCCCCCc-CCCC----CCCCcCcEEEecCHHHHHHHHH
Q 012165          128 EWYKEKGIEMIYQDPVTSIDIEKQTLITNSGKLLKYGSLIVATGCTASR-FPEK----IGGYLPGVHYIRDVADADALIS  202 (469)
Q Consensus       128 ~~~~~~~i~~~~~~~v~~id~~~~~v~~~~g~~~~yd~lVlAtG~~~~~-~~~~----~g~~~~~v~~~~~~~~~~~~~~  202 (469)
                      ++.+++++.+.                       ...++++|+|-.... +...    ....++.+. .   .|.+.+++
T Consensus        77 ~~~kq~~~~f~-----------------------~~g~l~vA~~e~e~~~L~~l~~~~~~ngv~~~~-~---ld~~~i~~  129 (429)
T COG0579          77 AICKQLGIPFI-----------------------NCGKLSVATGEEEVERLEKLYERGKANGVFDLE-I---LDKEEIKE  129 (429)
T ss_pred             HHHHHhCCccc-----------------------ccCeEEEEEChHHHHHHHHHHHHHhhCCCccee-e---cCHHHHHh
Confidence            33444443322                       225778888754210 1000    000022122 2   23444443


Q ss_pred             hhh---cCC--eEEEEcCChHHH-HHHHHHHhCCCeEeeeHHHHHHcCcEEEcCCeEEEEEeCCCCcEEEEEcCCCCE-E
Q 012165          203 SLE---KAK--KVVVVGGGYIGM-EVAAAAVGWKLDTTRYEQLYQQNGVKFVKGASIKNLEAGSDGRVAAVKLEDGST-I  275 (469)
Q Consensus       203 ~~~---~~~--~vvVvG~G~~g~-e~A~~l~~~g~~v~~~~~~l~~~gV~~~~~~~v~~i~~~~~~~v~~v~~~~g~~-i  275 (469)
                      ...   .+.  -+.+=++|.+.. ++..          .+.+.+.++|++++++++|+.|+..++| +..+.+++|++ +
T Consensus       130 ~eP~l~~~~~aal~~p~~giV~~~~~t~----------~l~e~a~~~g~~i~ln~eV~~i~~~~dg-~~~~~~~~g~~~~  198 (429)
T COG0579         130 LEPLLNEGAVAALLVPSGGIVDPGELTR----------ALAEEAQANGVELRLNTEVTGIEKQSDG-VFVLNTSNGEETL  198 (429)
T ss_pred             hCccccccceeeEEcCCCceEcHHHHHH----------HHHHHHHHcCCEEEecCeeeEEEEeCCc-eEEEEecCCcEEE
Confidence            321   111  111222333221 1121          3445677889999999999999987665 55678888877 9


Q ss_pred             eCCEEEEccCCccCCchhhhcCCcc
Q 012165          276 DADTIVIGIGAKPTVSPFERVGLNS  300 (469)
Q Consensus       276 ~~D~vi~a~G~~p~~~~~~~~gl~~  300 (469)
                      +|+.||.|.|.... .+++..|+..
T Consensus       199 ~ak~Vin~AGl~Ad-~la~~~g~~~  222 (429)
T COG0579         199 EAKFVINAAGLYAD-PLAQMAGIPE  222 (429)
T ss_pred             EeeEEEECCchhHH-HHHHHhCCCc
Confidence            99999999998875 5666666655

>PF03486 HI0933_like: HI0933-like protein; InterPro: IPR004792 This is a family of conserved hypothetical proteins that may include proteins with a dinucleotide-binding motif (Rossman fold), including oxidoreductases and dehydrogenases

Probab=98.88  E-value=1.5e-09  Score=107.80  Aligned_cols=120  Identities=28%  Similarity=0.392  Sum_probs=60.2

Q ss_pred             CcEEEEcCcHHHHHHHHHHHHcCCCCCcEEEEcCCCCCC-------CCCCCCcc------cccCCCCCCCCC----CC--
Q 012165           52 REFVIVGGGNAAGYAARTFVEHGMADGRLCIVSKEAYAP-------YERPALTK------GYLFPLDKKPAR----LP--  112 (469)
Q Consensus        52 ~~vvIIGgG~AGl~aA~~L~~~g~~~~~V~vie~~~~~~-------~~~~~l~~------~~~~~~~~~~~~----~~--  112 (469)
                      |||+|||||+|||.||..+++.|.   +|+|+|+.+...       --|..++.      .|..........    +.  
T Consensus         1 ydviIIGgGaAGl~aA~~aa~~g~---~V~vlE~~~~~gkKil~tG~GrCN~tn~~~~~~~~~~~~~~~~~f~~~~l~~f   77 (409)
T PF03486_consen    1 YDVIIIGGGAAGLMAAITAAEKGA---RVLVLERNKRVGKKILITGNGRCNLTNLNIDPSEFLSGYGRNPKFLKSALKRF   77 (409)
T ss_dssp             -SEEEE--SHHHHHHHHHHHHTT-----EEEE-SSSSS-HHHHHCGGGT-EEEETTSSGGGEECS-TBTTTCTHHHHHHS
T ss_pred             CcEEEECCCHHHHHHHHHHHhCCC---CEEEEeCCcccccceeecCCCCccccccccchhhHhhhcccchHHHHHHHhcC
Confidence            689999999999999999999987   899999997542       00111111      011000000000    00  


Q ss_pred             ------------CCccccCCCC-----CC-------CCHhHHHHCCcEEEeCCcEEEEeCCCc---EEEeCCCeEEEecc
Q 012165          113 ------------GFHTCVGSGG-----ER-------QTPEWYKEKGIEMIYQDPVTSIDIEKQ---TLITNSGKLLKYGS  165 (469)
Q Consensus       113 ------------~~~~~~~~~~-----~~-------~~~~~~~~~~i~~~~~~~v~~id~~~~---~v~~~~g~~~~yd~  165 (469)
                                  +.......+.     ..       .+...+++.+++++.+++|.++..++.   .|.++++.++.+|+
T Consensus        78 ~~~d~~~ff~~~Gv~~~~~~~gr~fP~s~~a~~Vv~~L~~~l~~~gv~i~~~~~V~~i~~~~~~~f~v~~~~~~~~~a~~  157 (409)
T PF03486_consen   78 SPEDLIAFFEELGVPTKIEEDGRVFPKSDKASSVVDALLEELKRLGVEIHFNTRVKSIEKKEDGVFGVKTKNGGEYEADA  157 (409)
T ss_dssp             -HHHHHHHHHHTT--EEE-STTEEEETT--HHHHHHHHHHHHHHHT-EEE-S--EEEEEEETTEEEEEEETTTEEEEESE
T ss_pred             CHHHHHHHHHhcCCeEEEcCCCEECCCCCcHHHHHHHHHHHHHHcCCEEEeCCEeeeeeecCCceeEeeccCcccccCCE
Confidence                        0000000000     00       012234677999999999999976443   57776778899999


Q ss_pred             EEeccCCCC
Q 012165          166 LIVATGCTA  174 (469)
Q Consensus       166 lVlAtG~~~  174 (469)
                      ||||||...
T Consensus       158 vILAtGG~S  166 (409)
T PF03486_consen  158 VILATGGKS  166 (409)
T ss_dssp             EEE----SS
T ss_pred             EEEecCCCC
Confidence            999999764

; PDB: 2I0Z_A 3V76_A 2GQF_A.

>PRK06847 hypothetical protein; Provisional

Probab=98.78  E-value=3e-08  Score=98.73  Aligned_cols=123  Identities=19%  Similarity=0.215  Sum_probs=74.1

Q ss_pred             CCCcEEEEcCcHHHHHHHHHHHHcCCCCCcEEEEcCCCCCCCCCC---------------CCcccc------------cC
Q 012165           50 ENREFVIVGGGNAAGYAARTFVEHGMADGRLCIVSKEAYAPYERP---------------ALTKGY------------LF  102 (469)
Q Consensus        50 ~~~~vvIIGgG~AGl~aA~~L~~~g~~~~~V~vie~~~~~~~~~~---------------~l~~~~------------~~  102 (469)
                      +++||+|||||+||+++|..|++.|+   +|+|+|+.+...-...               .+...+            ..
T Consensus         3 ~~~~V~IVGaG~aGl~~A~~L~~~g~---~v~v~E~~~~~~~~g~g~~l~~~~~~~l~~~gl~~~~~~~~~~~~~~~~~~   79 (375)
T PRK06847          3 AVKKVLIVGGGIGGLSAAIALRRAGI---AVDLVEIDPEWRVYGAGITLQGNALRALRELGVLDECLEAGFGFDGVDLFD   79 (375)
T ss_pred             CcceEEEECCCHHHHHHHHHHHhCCC---CEEEEecCCCCccCCceeeecHHHHHHHHHcCCHHHHHHhCCCccceEEEC
Confidence            46799999999999999999999988   7999998764311000               000000            00


Q ss_pred             CCCCCCCCCC--CC--------ccccCCCCCCCCHhHHHHCCcEEEeCCcEEEEeCCCc--EEEeCCCeEEEeccEEecc
Q 012165          103 PLDKKPARLP--GF--------HTCVGSGGERQTPEWYKEKGIEMIYQDPVTSIDIEKQ--TLITNSGKLLKYGSLIVAT  170 (469)
Q Consensus       103 ~~~~~~~~~~--~~--------~~~~~~~~~~~~~~~~~~~~i~~~~~~~v~~id~~~~--~v~~~~g~~~~yd~lVlAt  170 (469)
                      ........++  .+        ...........+.+.+.+.+++++.++++..++....  .+.+.+|+++.+|.||.|+
T Consensus        80 ~~g~~~~~~~~~~~~~~~~~~~~~i~r~~l~~~L~~~~~~~gv~v~~~~~v~~i~~~~~~~~v~~~~g~~~~ad~vI~Ad  159 (375)
T PRK06847         80 PDGTLLAELPTPRLAGDDLPGGGGIMRPALARILADAARAAGADVRLGTTVTAIEQDDDGVTVTFSDGTTGRYDLVVGAD  159 (375)
T ss_pred             CCCCEEEecCcccccccCCCCcccCcHHHHHHHHHHHHHHhCCEEEeCCEEEEEEEcCCEEEEEEcCCCEEEcCEEEECc
Confidence            0000000000  00        0000000001122334457899999999999876544  5677788889999999999


Q ss_pred             CCCCC
Q 012165          171 GCTAS  175 (469)
Q Consensus       171 G~~~~  175 (469)
                      |....
T Consensus       160 G~~s~  164 (375)
T PRK06847        160 GLYSK  164 (375)
T ss_pred             CCCcc
Confidence            97653

>COG0029 NadB Aspartate oxidase [Coenzyme metabolism]

Probab=98.78  E-value=2.8e-08  Score=97.23  Aligned_cols=56  Identities=30%  Similarity=0.453  Sum_probs=43.4

Q ss_pred             CCCEEeCCCCCCCCCceEEeccccccCCccCCcccccchHHHHHHHHHHHHHHHhcC
Q 012165          302 VGGIQVDGQFRTRMPGIFAIGDVAAFPLKMYDRTARVEHVDHARQSAQHCIKALLSA  358 (469)
Q Consensus       302 ~g~i~Vd~~~~t~~~~Vfa~GD~a~~~~~~~~~~~~~~~~~~A~~~a~~~a~~i~~~  358 (469)
                      -|||.||.+.||+.|++||+|.|+.......++++ ..+.-++...|..+|++|.+.
T Consensus       341 mGGI~vD~~GrTsi~gLYAiGEvA~TGlHGANRLA-SNSLLE~vV~g~~aA~~i~~~  396 (518)
T COG0029         341 MGGIAVDANGRTSIPGLYAIGEVACTGLHGANRLA-SNSLLECLVFGKRAAEDIAGR  396 (518)
T ss_pred             cccEEECCCCcccCcccEEeeeecccccccchhhh-hhhHHHHHHHHHHHHHHhhcc
Confidence            38999999999999999999999986543333332 345567888899999999864

>COG3075 GlpB Anaerobic glycerol-3-phosphate dehydrogenase [Amino acid transport and metabolism]

Probab=98.75  E-value=1.1e-07  Score=88.02  Aligned_cols=118  Identities=18%  Similarity=0.257  Sum_probs=76.6

Q ss_pred             eeHHHHHHcCcEEEcCCeEEEEEeCCCCcEEEEEcCCCCE--EeCCEEEEccCCccCCchhh----------hcCCc---
Q 012165          235 RYEQLYQQNGVKFVKGASIKNLEAGSDGRVAAVKLEDGST--IDADTIVIGIGAKPTVSPFE----------RVGLN---  299 (469)
Q Consensus       235 ~~~~~l~~~gV~~~~~~~v~~i~~~~~~~v~~v~~~~g~~--i~~D~vi~a~G~~p~~~~~~----------~~gl~---  299 (469)
                      .+...+++.|..+..+.+|.+.+- ..++|+.|.+.+...  +.+|..|+|+|.--...+..          ++.+.   
T Consensus       263 ~L~~~f~~~Gg~~m~Gd~V~~a~~-~~~~v~~i~trn~~diP~~a~~~VLAsGsffskGLvae~d~I~EPIf~ldi~~~~  341 (421)
T COG3075         263 QLQRQFEQLGGLWMPGDEVKKATC-KGGRVTEIYTRNHADIPLRADFYVLASGSFFSKGLVAERDKIYEPIFDLDILQTA  341 (421)
T ss_pred             HHHHHHHHcCceEecCCceeeeee-eCCeEEEEEecccccCCCChhHeeeeccccccccchhhhhhhhcchhhcccccCc
Confidence            567788899999999999999884 478888999888754  56899999998643322110          01110   


Q ss_pred             ---------------ccCCCEEeCCCCCCC-----CCceEEeccccccCCccCCcccccchHHHHHHHHHHHHHHHhc
Q 012165          300 ---------------SSVGGIQVDGQFRTR-----MPGIFAIGDVAAFPLKMYDRTARVEHVDHARQSAQHCIKALLS  357 (469)
Q Consensus       300 ---------------~~~g~i~Vd~~~~t~-----~~~Vfa~GD~a~~~~~~~~~~~~~~~~~~A~~~a~~~a~~i~~  357 (469)
                                     ...=|+.+|+++|.+     ..|+||+|.+.+..++..-...    -..+...|-.+|+.|+.
T Consensus       342 dR~~W~~~~ffapqp~~qfGV~tD~~lrp~~~g~~~eNL~aiGavlgGfdpi~egcG----sGVaivta~~aa~qi~~  415 (421)
T COG3075         342 DRAEWYHSDFFAPQPYQQFGVTTDDTLRPSRGGQTIENLYAIGAVLGGFDPIAEGCG----SGVAIVTALHAAEQIAE  415 (421)
T ss_pred             chhhhhhccccCCChhHHhCcccccccCccccchHHHHHHHHHHHhcCCcHHHhcCC----cchHHHHHHHHHHHHHH
Confidence                           001267888888763     5799999999987664321100    11244555556666553

>PLN02463 lycopene beta cyclase

Probab=98.71  E-value=5.5e-08  Score=98.14  Aligned_cols=126  Identities=17%  Similarity=0.241  Sum_probs=74.5

Q ss_pred             cCCCCCCcEEEEcCcHHHHHHHHHHHHcCCCCCcEEEEcCCCCCCCCCCC-Cccccc--CCC-CCCCCCCCCCc------
Q 012165           46 SFANENREFVIVGGGNAAGYAARTFVEHGMADGRLCIVSKEAYAPYERPA-LTKGYL--FPL-DKKPARLPGFH------  115 (469)
Q Consensus        46 ~~~~~~~~vvIIGgG~AGl~aA~~L~~~g~~~~~V~vie~~~~~~~~~~~-l~~~~~--~~~-~~~~~~~~~~~------  115 (469)
                      +.....+||+|||||+||+++|..|++.|+   +|+|+|+.+..++.+.. .+...+  .+. +.....++...      
T Consensus        23 ~~~~~~~DVvIVGaGpAGLalA~~La~~Gl---~V~liE~~~~~~~p~~~g~w~~~l~~lgl~~~l~~~w~~~~v~~~~~   99 (447)
T PLN02463         23 PSKSRVVDLVVVGGGPAGLAVAQQVSEAGL---SVCCIDPSPLSIWPNNYGVWVDEFEALGLLDCLDTTWPGAVVYIDDG   99 (447)
T ss_pred             CccccCceEEEECCCHHHHHHHHHHHHCCC---eEEEeccCccchhccccchHHHHHHHCCcHHHHHhhCCCcEEEEeCC
Confidence            344566899999999999999999999987   79999997654332110 000000  000 00000000000      


Q ss_pred             ---------c-ccCCCCCCCCHhHHHHCCcEEEeCCcEEEEeCCCc--EEEeCCCeEEEeccEEeccCCCCC
Q 012165          116 ---------T-CVGSGGERQTPEWYKEKGIEMIYQDPVTSIDIEKQ--TLITNSGKLLKYGSLIVATGCTAS  175 (469)
Q Consensus       116 ---------~-~~~~~~~~~~~~~~~~~~i~~~~~~~v~~id~~~~--~v~~~~g~~~~yd~lVlAtG~~~~  175 (469)
                               . .....+.....+.+.+.+++++. .+|.+++..+.  .|++++|.++++|.||.|+|....
T Consensus       100 ~~~~~~~~y~~V~R~~L~~~Ll~~~~~~GV~~~~-~~V~~I~~~~~~~~V~~~dG~~i~A~lVI~AdG~~s~  170 (447)
T PLN02463        100 KKKDLDRPYGRVNRKKLKSKMLERCIANGVQFHQ-AKVKKVVHEESKSLVVCDDGVKIQASLVLDATGFSRC  170 (447)
T ss_pred             CCccccCcceeEEHHHHHHHHHHHHhhcCCEEEe-eEEEEEEEcCCeEEEEECCCCEEEcCEEEECcCCCcC
Confidence                     0 00000001112223456899875 58888876543  678888988999999999998753

>TIGR02032 GG-red-SF geranylgeranyl reductase family

Probab=98.70  E-value=7.5e-08  Score=92.34  Aligned_cols=120  Identities=23%  Similarity=0.344  Sum_probs=69.9

Q ss_pred             CcEEEEcCcHHHHHHHHHHHHcCCCCCcEEEEcCCCCCCCCCC--CCccc---cc----------------CCCCCCCCC
Q 012165           52 REFVIVGGGNAAGYAARTFVEHGMADGRLCIVSKEAYAPYERP--ALTKG---YL----------------FPLDKKPAR  110 (469)
Q Consensus        52 ~~vvIIGgG~AGl~aA~~L~~~g~~~~~V~vie~~~~~~~~~~--~l~~~---~~----------------~~~~~~~~~  110 (469)
                      +||+|||||+||+++|..|++.|.   +|+|+|+.+.......  .+...   .+                .........
T Consensus         1 ~dv~IiGaG~aGl~~A~~l~~~g~---~v~vie~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~   77 (295)
T TIGR02032         1 YDVVVVGAGPAGASAAYRLADKGL---RVLLLEKKSFPRYKPCGGALSPRVLEELDLPLELIVNLVRGARFFSPNGDSVE   77 (295)
T ss_pred             CCEEEECCCHHHHHHHHHHHHCCC---eEEEEeccCCCCcccccCccCHhHHHHhcCCchhhhhheeeEEEEcCCCcEEE
Confidence            589999999999999999999987   7999999875432100  00000   00                000000000


Q ss_pred             CC--C--CccccCCCCCCCCHhHHHHCCcEEEeCCcEEEEeCCCc--EEEeCC-CeEEEeccEEeccCCCC
Q 012165          111 LP--G--FHTCVGSGGERQTPEWYKEKGIEMIYQDPVTSIDIEKQ--TLITNS-GKLLKYGSLIVATGCTA  174 (469)
Q Consensus       111 ~~--~--~~~~~~~~~~~~~~~~~~~~~i~~~~~~~v~~id~~~~--~v~~~~-g~~~~yd~lVlAtG~~~  174 (469)
                      .+  .  ............+.+...+.+++++.++++..+..++.  .+.+.+ +.++++|++|+|+|...
T Consensus        78 ~~~~~~~~~~i~r~~l~~~l~~~~~~~gv~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~a~~vv~a~G~~s  148 (295)
T TIGR02032        78 IPIETELAYVIDRDAFDEQLAERAQEAGAELRLGTTVLDVEIHDDRVVVIVRGGEGTVTAKIVIGADGSRS  148 (295)
T ss_pred             eccCCCcEEEEEHHHHHHHHHHHHHHcCCEEEeCcEEeeEEEeCCEEEEEEcCccEEEEeCEEEECCCcch
Confidence            00  0  00000000111123334567899999999988765444  344443 45799999999999753

This model represents a subfamily which includes geranylgeranyl reductases involved in chlorophyll and bacteriochlorophyll biosynthesis as well as other related enzymes which may also act on geranylgeranyl groups or related substrates.

>PRK06834 hypothetical protein; Provisional

Probab=98.69  E-value=1.1e-07  Score=97.74  Aligned_cols=123  Identities=22%  Similarity=0.312  Sum_probs=74.8

Q ss_pred             CCCcEEEEcCcHHHHHHHHHHHHcCCCCCcEEEEcCCCCCCC--CCC-CCc-------------ccccCCCCCC------
Q 012165           50 ENREFVIVGGGNAAGYAARTFVEHGMADGRLCIVSKEAYAPY--ERP-ALT-------------KGYLFPLDKK------  107 (469)
Q Consensus        50 ~~~~vvIIGgG~AGl~aA~~L~~~g~~~~~V~vie~~~~~~~--~~~-~l~-------------~~~~~~~~~~------  107 (469)
                      ..+||+||||||+|+++|..|++.|+   +|+|+|+.+...+  .|. .++             ..+.......      
T Consensus         2 ~~~dVlIVGaGp~Gl~lA~~La~~G~---~v~vlEr~~~~~~~~~Ra~~l~~~s~~~L~~lGl~~~l~~~~~~~~~~~~~   78 (488)
T PRK06834          2 TEHAVVIAGGGPTGLMLAGELALAGV---DVAIVERRPNQELVGSRAGGLHARTLEVLDQRGIADRFLAQGQVAQVTGFA   78 (488)
T ss_pred             CcceEEEECCCHHHHHHHHHHHHCCC---cEEEEecCCCCCCCCcceeeECHHHHHHHHHcCcHHHHHhcCCccccceee
Confidence            45899999999999999999999998   7999999865321  111 111             0000000000      


Q ss_pred             --CCCCCCCcc--ccC-----CCCCCCCHhHHHHCCcEEEeCCcEEEEeCCCc--EEEeCCCeEEEeccEEeccCCCCC
Q 012165          108 --PARLPGFHT--CVG-----SGGERQTPEWYKEKGIEMIYQDPVTSIDIEKQ--TLITNSGKLLKYGSLIVATGCTAS  175 (469)
Q Consensus       108 --~~~~~~~~~--~~~-----~~~~~~~~~~~~~~~i~~~~~~~v~~id~~~~--~v~~~~g~~~~yd~lVlAtG~~~~  175 (469)
                        ..++..+..  ..+     ......+.+.+++.+++++.+++++++..++.  .+++.+|+++.+|+||.|.|.+..
T Consensus        79 ~~~~~~~~~~~~~~~~~~i~q~~le~~L~~~l~~~gv~i~~~~~v~~v~~~~~~v~v~~~~g~~i~a~~vVgADG~~S~  157 (488)
T PRK06834         79 ATRLDISDFPTRHNYGLALWQNHIERILAEWVGELGVPIYRGREVTGFAQDDTGVDVELSDGRTLRAQYLVGCDGGRSL  157 (488)
T ss_pred             eEecccccCCCCCCccccccHHHHHHHHHHHHHhCCCEEEcCCEEEEEEEcCCeEEEEECCCCEEEeCEEEEecCCCCC
Confidence              000000000  000     00000112334567999999999999876554  556667778999999999998754

>TIGR00551 nadB L-aspartate oxidase

Probab=98.68  E-value=1.4e-06  Score=89.67  Aligned_cols=55  Identities=31%  Similarity=0.413  Sum_probs=38.5

Q ss_pred             CCCEEeCCCCCCCCCceEEeccccccCCccCCcccccchHHHHHHHHHHHHHHHhc
Q 012165          302 VGGIQVDGQFRTRMPGIFAIGDVAAFPLKMYDRTARVEHVDHARQSAQHCIKALLS  357 (469)
Q Consensus       302 ~g~i~Vd~~~~t~~~~Vfa~GD~a~~~~~~~~~~~~~~~~~~A~~~a~~~a~~i~~  357 (469)
                      -|||.||.+.||++|++||+|+|+.......++.. -.+...+...|+.+++++..
T Consensus       333 ~GGi~vd~~~~t~I~GLyAaGE~a~~g~hGanrl~-g~sl~~~~v~G~~Ag~~aa~  387 (488)
T TIGR00551       333 CGGISVDDHGRTTVPGLYAIGEVACTGLHGANRLA-SNSLLECLVFGWSAAEDISR  387 (488)
T ss_pred             cCCEEECCCCcccCCCEEECccccccccCcccccc-hhHHHHHHHHHHHHHHHHHh
Confidence            48999999999999999999999742111111111 23456677788888888764

L-aspartate oxidase is the B protein, NadB, of the quinolinate synthetase complex. Quinolinate synthetase makes a precursor of the pyridine nucleotide portion of NAD. This model identifies proteins that cluster as L-aspartate oxidase (a flavoprotein difficult to separate from the set of closely related flavoprotein subunits of succinate dehydrogenase and fumarate reductase) by both UPGMA and neighbor-joining trees. The most distant protein accepted as an L-aspartate oxidase (NadB), that from Pyrococcus horikoshii, not only clusters with other NadB but is just one gene away from NadA.

>COG0644 FixC Dehydrogenases (flavoproteins) [Energy production and conversion]

Probab=98.68  E-value=1e-07  Score=95.44  Aligned_cols=123  Identities=20%  Similarity=0.240  Sum_probs=74.6

Q ss_pred             CCCCcEEEEcCcHHHHHHHHHHHHcCCCCCcEEEEcCCCCCCCCCCC---Cccc----ccCCCCC-CCCCCCCCcc-cc-
Q 012165           49 NENREFVIVGGGNAAGYAARTFVEHGMADGRLCIVSKEAYAPYERPA---LTKG----YLFPLDK-KPARLPGFHT-CV-  118 (469)
Q Consensus        49 ~~~~~vvIIGgG~AGl~aA~~L~~~g~~~~~V~vie~~~~~~~~~~~---l~~~----~~~~~~~-~~~~~~~~~~-~~-  118 (469)
                      ++++||+||||||||++||+.|++.|+   +|+|+|+...+.+....   ++..    +...... ....+.+... .. 
T Consensus         1 ~~~~DVvIVGaGPAGs~aA~~la~~G~---~VlvlEk~~~~G~k~~~~~~~~~~~l~~l~~~~~~~i~~~v~~~~~~~~~   77 (396)
T COG0644           1 MMEYDVVIVGAGPAGSSAARRLAKAGL---DVLVLEKGSEPGAKPCCGGGLSPRALEELIPDFDEEIERKVTGARIYFPG   77 (396)
T ss_pred             CceeeEEEECCchHHHHHHHHHHHcCC---eEEEEecCCCCCCCccccceechhhHHHhCCCcchhhheeeeeeEEEecC
Confidence            357899999999999999999999996   89999998876543221   1110    0111000 0000000000 00 


Q ss_pred             ----------------CCCCCCCCHhHHHHCCcEEEeCCcEEEEeCCCc--EE-EeCCCeEEEeccEEeccCCCC
Q 012165          119 ----------------GSGGERQTPEWYKEKGIEMIYQDPVTSIDIEKQ--TL-ITNSGKLLKYGSLIVATGCTA  174 (469)
Q Consensus       119 ----------------~~~~~~~~~~~~~~~~i~~~~~~~v~~id~~~~--~v-~~~~g~~~~yd~lVlAtG~~~  174 (469)
                                      ...+...+.+..++.|.+++.++++..+..++.  .+ +..++.++.++++|.|+|...
T Consensus        78 ~~~~~~~~~~~~y~v~R~~fd~~La~~A~~aGae~~~~~~~~~~~~~~~~~~~~~~~~~~e~~a~~vI~AdG~~s  152 (396)
T COG0644          78 EKVAIEVPVGEGYIVDRAKFDKWLAERAEEAGAELYPGTRVTGVIREDDGVVVGVRAGDDEVRAKVVIDADGVNS  152 (396)
T ss_pred             CceEEecCCCceEEEEhHHhhHHHHHHHHHcCCEEEeceEEEEEEEeCCcEEEEEEcCCEEEEcCEEEECCCcch
Confidence                            000011122334567999999999998876653  22 223336799999999999764

>PRK10015 oxidoreductase; Provisional

Probab=98.67  E-value=8.1e-08  Score=97.08  Aligned_cols=123  Identities=17%  Similarity=0.246  Sum_probs=71.6

Q ss_pred             CCCCcEEEEcCcHHHHHHHHHHHHcCCCCCcEEEEcCCCCCCCCCC---CCc----ccccCCC--CCCC-CCCCC-----
Q 012165           49 NENREFVIVGGGNAAGYAARTFVEHGMADGRLCIVSKEAYAPYERP---ALT----KGYLFPL--DKKP-ARLPG-----  113 (469)
Q Consensus        49 ~~~~~vvIIGgG~AGl~aA~~L~~~g~~~~~V~vie~~~~~~~~~~---~l~----~~~~~~~--~~~~-~~~~~-----  113 (469)
                      ..++||+||||||||++||..|++.|+   +|+|||+.+.+.....   .++    ..++...  .... .....     
T Consensus         3 ~~~~DViIVGgGpAG~~aA~~LA~~G~---~VlliEr~~~~g~k~~~gg~i~~~~~~~l~~~~~~~~~i~~~~~~~~~~~   79 (429)
T PRK10015          3 DDKFDAIVVGAGVAGSVAALVMARAGL---DVLVIERGDSAGCKNMTGGRLYAHTLEAIIPGFAASAPVERKVTREKISF   79 (429)
T ss_pred             ccccCEEEECcCHHHHHHHHHHHhCCC---eEEEEecCCCCCcccccCceeecccHHHHcccccccCCccccccceeEEE
Confidence            346899999999999999999999988   7999999876432210   000    0000000  0000 00000     


Q ss_pred             ----------Ccc-------ccCCCCCC-C----CHhHHHHCCcEEEeCCcEEEEeCCCcEEE--eCCCeEEEeccEEec
Q 012165          114 ----------FHT-------CVGSGGER-Q----TPEWYKEKGIEMIYQDPVTSIDIEKQTLI--TNSGKLLKYGSLIVA  169 (469)
Q Consensus       114 ----------~~~-------~~~~~~~~-~----~~~~~~~~~i~~~~~~~v~~id~~~~~v~--~~~g~~~~yd~lVlA  169 (469)
                                +..       ..+....+ .    +.+..++.|++++.+++|+.+..++..+.  ..++.++.+|.+|+|
T Consensus        80 ~~~~~~~~~~~~~~~~~~~~~~~~~v~R~~fd~~L~~~a~~~Gv~i~~~~~V~~i~~~~~~v~~v~~~~~~i~A~~VI~A  159 (429)
T PRK10015         80 LTEESAVTLDFHREQPDVPQHASYTVLRNRLDPWLMEQAEQAGAQFIPGVRVDALVREGNKVTGVQAGDDILEANVVILA  159 (429)
T ss_pred             EeCCCceEeecccCCCCCCCcCceEeehhHHHHHHHHHHHHcCCEEECCcEEEEEEEeCCEEEEEEeCCeEEECCEEEEc
Confidence                      000       00000000 1    12334567999999989998876544332  234567999999999


Q ss_pred             cCCCC
Q 012165          170 TGCTA  174 (469)
Q Consensus       170 tG~~~  174 (469)
                      +|...
T Consensus       160 dG~~s  164 (429)
T PRK10015        160 DGVNS  164 (429)
T ss_pred             cCcch
Confidence            99753

>PRK10157 putative oxidoreductase FixC; Provisional

Probab=98.66  E-value=1.1e-07  Score=96.20  Aligned_cols=123  Identities=20%  Similarity=0.271  Sum_probs=71.9

Q ss_pred             CCCCcEEEEcCcHHHHHHHHHHHHcCCCCCcEEEEcCCCCCCCCCC---CCc----ccccCC--CCCCCCCCC-----CC
Q 012165           49 NENREFVIVGGGNAAGYAARTFVEHGMADGRLCIVSKEAYAPYERP---ALT----KGYLFP--LDKKPARLP-----GF  114 (469)
Q Consensus        49 ~~~~~vvIIGgG~AGl~aA~~L~~~g~~~~~V~vie~~~~~~~~~~---~l~----~~~~~~--~~~~~~~~~-----~~  114 (469)
                      ..++||+||||||||++||..|++.|+   +|+|+|+.+.+.....   .++    ..++..  ......+..     .+
T Consensus         3 ~~~~DViIVGaGpAG~~aA~~La~~G~---~V~llEr~~~~g~k~~~gg~l~~~~~e~l~~~~~~~~~~~~~~~~~~~~~   79 (428)
T PRK10157          3 EDIFDAIIVGAGLAGSVAALVLAREGA---QVLVIERGNSAGAKNVTGGRLYAHSLEHIIPGFADSAPVERLITHEKLAF   79 (428)
T ss_pred             cccCcEEEECcCHHHHHHHHHHHhCCC---eEEEEEcCCCCCCcccccceechhhHHHHhhhhhhcCcccceeeeeeEEE
Confidence            346999999999999999999999998   7999999876432110   000    000000  000000000     00


Q ss_pred             ---------ccccC---C----CC-------CCCCHhHHHHCCcEEEeCCcEEEEeCCCcEE--EeCCCeEEEeccEEec
Q 012165          115 ---------HTCVG---S----GG-------ERQTPEWYKEKGIEMIYQDPVTSIDIEKQTL--ITNSGKLLKYGSLIVA  169 (469)
Q Consensus       115 ---------~~~~~---~----~~-------~~~~~~~~~~~~i~~~~~~~v~~id~~~~~v--~~~~g~~~~yd~lVlA  169 (469)
                               .....   .    ..       ...+.+..++.|++++.+++|+.+..++..+  ...++.++.+|.||+|
T Consensus        80 ~~~~~~~~~~~~~~~~~~~~~~~~~v~R~~fD~~L~~~a~~~Gv~i~~~~~V~~i~~~~g~v~~v~~~g~~i~A~~VI~A  159 (428)
T PRK10157         80 MTEKSAMTMDYCNGDETSPSQRSYSVLRSKFDAWLMEQAEEAGAQLITGIRVDNLVQRDGKVVGVEADGDVIEAKTVILA  159 (428)
T ss_pred             EcCCCceeeccccccccCCCCCceeeEHHHHHHHHHHHHHHCCCEEECCCEEEEEEEeCCEEEEEEcCCcEEECCEEEEE
Confidence                     00000   0    00       0001223356799999999999986544332  3446678999999999


Q ss_pred             cCCCC
Q 012165          170 TGCTA  174 (469)
Q Consensus       170 tG~~~  174 (469)
                      +|...
T Consensus       160 ~G~~s  164 (428)
T PRK10157        160 DGVNS  164 (428)
T ss_pred             eCCCH
Confidence            99754

>PRK07190 hypothetical protein; Provisional

Probab=98.64  E-value=1.4e-07  Score=96.81  Aligned_cols=123  Identities=21%  Similarity=0.213  Sum_probs=74.4

Q ss_pred             CCCCcEEEEcCcHHHHHHHHHHHHcCCCCCcEEEEcCCCCCC-CCCC--------------CCcccccC-----------
Q 012165           49 NENREFVIVGGGNAAGYAARTFVEHGMADGRLCIVSKEAYAP-YERP--------------ALTKGYLF-----------  102 (469)
Q Consensus        49 ~~~~~vvIIGgG~AGl~aA~~L~~~g~~~~~V~vie~~~~~~-~~~~--------------~l~~~~~~-----------  102 (469)
                      ...+||+||||||+|+++|..|+++|.   +|+|||+.+... ..+.              .+...+..           
T Consensus         3 ~~~~dVlIVGAGPaGL~lA~~Lar~Gi---~V~llEr~~~~~~~gra~~l~~~tle~L~~lGl~~~l~~~~~~~~~~~~~   79 (487)
T PRK07190          3 TQVTDVVIIGAGPVGLMCAYLGQLCGL---NTVIVDKSDGPLEVGRADALNARTLQLLELVDLFDELYPLGKPCNTSSVW   79 (487)
T ss_pred             CccceEEEECCCHHHHHHHHHHHHcCC---CEEEEeCCCcccccccceEeCHHHHHHHHhcChHHHHHhhCccceeEEEe
Confidence            455899999999999999999999987   799999987531 1110              00000000           


Q ss_pred             CCCCCC-------CCCCCC-c---cccCC-CCCCCCHhHHHHCCcEEEeCCcEEEEeCCCc--EEEeCCCeEEEeccEEe
Q 012165          103 PLDKKP-------ARLPGF-H---TCVGS-GGERQTPEWYKEKGIEMIYQDPVTSIDIEKQ--TLITNSGKLLKYGSLIV  168 (469)
Q Consensus       103 ~~~~~~-------~~~~~~-~---~~~~~-~~~~~~~~~~~~~~i~~~~~~~v~~id~~~~--~v~~~~g~~~~yd~lVl  168 (469)
                      ......       ..++.. .   ..... .....+.+.+++.|++++.+++|+++..+..  .+++.+|+++.+++||.
T Consensus        80 ~~g~~i~~~~~~~~~~~~~~~~~~~~~~q~~le~~L~~~~~~~Gv~v~~~~~v~~l~~~~~~v~v~~~~g~~v~a~~vVg  159 (487)
T PRK07190         80 ANGKFISRQSSWWEELEGCLHKHFLMLGQSYVEKLLDDKLKEAGAAVKRNTSVVNIELNQAGCLTTLSNGERIQSRYVIG  159 (487)
T ss_pred             cCCceEeeccccCccCCcCCCCceEecCHHHHHHHHHHHHHHCCCEEEeCCEEEEEEEcCCeeEEEECCCcEEEeCEEEE
Confidence            000000       000000 0   00000 0000112345567999999999999876543  45667788899999999


Q ss_pred             ccCCCC
Q 012165          169 ATGCTA  174 (469)
Q Consensus       169 AtG~~~  174 (469)
                      |+|.+.
T Consensus       160 ADG~~S  165 (487)
T PRK07190        160 ADGSRS  165 (487)
T ss_pred             CCCCCH
Confidence            999864

>PRK04176 ribulose-1,5-biphosphate synthetase; Provisional

Probab=98.62  E-value=5.3e-08  Score=91.06  Aligned_cols=120  Identities=14%  Similarity=0.167  Sum_probs=69.1

Q ss_pred             CCCCcEEEEcCcHHHHHHHHHHHHcCCCCCcEEEEcCCCCCCCCCCCCcccccCCC--------------CCCCCC-CCC
Q 012165           49 NENREFVIVGGGNAAGYAARTFVEHGMADGRLCIVSKEAYAPYERPALTKGYLFPL--------------DKKPAR-LPG  113 (469)
Q Consensus        49 ~~~~~vvIIGgG~AGl~aA~~L~~~g~~~~~V~vie~~~~~~~~~~~l~~~~~~~~--------------~~~~~~-~~~  113 (469)
                      ...+||+|||||+||++||.+|++.|+   +|+|+|+.+.+....  ...+.+.+.              .....+ -++
T Consensus        23 ~~~~DVvIVGgGpAGl~AA~~la~~G~---~V~liEk~~~~Ggg~--~~gg~~~~~~~v~~~~~~~l~~~gv~~~~~~~g   97 (257)
T PRK04176         23 YLEVDVAIVGAGPSGLTAAYYLAKAGL---KVAVFERKLSFGGGM--WGGGMLFNKIVVQEEADEILDEFGIRYKEVEDG   97 (257)
T ss_pred             hccCCEEEECccHHHHHHHHHHHhCCC---eEEEEecCCCCCCcc--ccCccccccccchHHHHHHHHHCCCCceeecCc
Confidence            456899999999999999999999987   799999987643210  000000000              000000 000


Q ss_pred             CccccCCCCCCCCHhHHHHCCcEEEeCCcEEEEeCCCc-EE---EeC-----------CCeEEEeccEEeccCCC
Q 012165          114 FHTCVGSGGERQTPEWYKEKGIEMIYQDPVTSIDIEKQ-TL---ITN-----------SGKLLKYGSLIVATGCT  173 (469)
Q Consensus       114 ~~~~~~~~~~~~~~~~~~~~~i~~~~~~~v~~id~~~~-~v---~~~-----------~g~~~~yd~lVlAtG~~  173 (469)
                      ............+.+...+.|++++.+++|.++..++. .+   .+.           +...+.++.+|+|||..
T Consensus        98 ~~~vd~~~l~~~L~~~A~~~Gv~I~~~t~V~dl~~~~~g~V~Gvv~~~~~v~~~g~~~~~~~i~Ak~VI~ATG~~  172 (257)
T PRK04176         98 LYVADSVEAAAKLAAAAIDAGAKIFNGVSVEDVILREDPRVAGVVINWTPVEMAGLHVDPLTIEAKAVVDATGHD  172 (257)
T ss_pred             ceeccHHHHHHHHHHHHHHcCCEEEcCceeceeeEeCCCcEEEEEEccccccccCCCCCcEEEEcCEEEEEeCCC
Confidence            00000000111122334667999999988888764322 22   111           22468999999999965

>PF13454 NAD_binding_9: FAD-NAD(P)-binding

Probab=98.60  E-value=5.3e-07  Score=77.83  Aligned_cols=117  Identities=16%  Similarity=0.337  Sum_probs=66.0

Q ss_pred             EEEcCcHHHHHHHHHHHHcC--CCCCcEEEEcCCCCC---CCCCCCCcccccC-CCCC---CCCCC-CCCccccCCCC--
Q 012165           55 VIVGGGNAAGYAARTFVEHG--MADGRLCIVSKEAYA---PYERPALTKGYLF-PLDK---KPARL-PGFHTCVGSGG--  122 (469)
Q Consensus        55 vIIGgG~AGl~aA~~L~~~g--~~~~~V~vie~~~~~---~~~~~~l~~~~~~-~~~~---~~~~~-~~~~~~~~~~~--  122 (469)
                      +|||+|++|++++.+|.+..  .+..+|+|+|+.+..   +|........++. +...   ...+. +.|..+.....  
T Consensus         1 AIIG~G~~G~~~l~~L~~~~~~~~~~~I~vfd~~~~G~G~~~~~~~~~~~llN~~a~~~s~~~~~~~~~f~~Wl~~~~~~   80 (156)
T PF13454_consen    1 AIIGGGPSGLAVLERLLRQADPKPPLEITVFDPSPFGAGGAYRPDQPPSHLLNTPADQMSLFPDDPGDDFVDWLRANGAD   80 (156)
T ss_pred             CEECcCHHHHHHHHHHHHhcCCCCCCEEEEEcCCCccccccCCCCCChHHhhcccccccccccccCCCCHHHHHHhcCcc
Confidence            59999999999999999984  346799999996543   2332111111111 0000   01111 12222111111  


Q ss_pred             --------CCCCHh----H--------HHH--CC--cEEEeCCcEEEEeCCCc--EEEeCCCeEEEeccEEeccCC
Q 012165          123 --------ERQTPE----W--------YKE--KG--IEMIYQDPVTSIDIEKQ--TLITNSGKLLKYGSLIVATGC  172 (469)
Q Consensus       123 --------~~~~~~----~--------~~~--~~--i~~~~~~~v~~id~~~~--~v~~~~g~~~~yd~lVlAtG~  172 (469)
                              ...+..    +        .+.  .+  +.++. .+|+.++..+.  .|.+.+|..+.||+||||||.
T Consensus        81 ~~~~~~~~~f~pR~~~G~YL~~~~~~~~~~~~~~i~v~~~~-~~V~~i~~~~~~~~v~~~~g~~~~~d~VvLa~Gh  155 (156)
T PF13454_consen   81 EAEEIDPDDFPPRALFGEYLRDRFDRLLARLPAGITVRHVR-AEVVDIRRDDDGYRVVTADGQSIRADAVVLATGH  155 (156)
T ss_pred             cccccccccCCCHHHHHHHHHHHHHHHHHhhcCCcEEEEEe-eEEEEEEEcCCcEEEEECCCCEEEeCEEEECCCC
Confidence                    001111    1        111  23  33444 58888887654  678899999999999999995

>PRK06184 hypothetical protein; Provisional

Probab=98.60  E-value=2.3e-07  Score=96.09  Aligned_cols=122  Identities=16%  Similarity=0.165  Sum_probs=72.2

Q ss_pred             CCCcEEEEcCcHHHHHHHHHHHHcCCCCCcEEEEcCCCCCCC-CC--------------CCCccccc-----------CC
Q 012165           50 ENREFVIVGGGNAAGYAARTFVEHGMADGRLCIVSKEAYAPY-ER--------------PALTKGYL-----------FP  103 (469)
Q Consensus        50 ~~~~vvIIGgG~AGl~aA~~L~~~g~~~~~V~vie~~~~~~~-~~--------------~~l~~~~~-----------~~  103 (469)
                      +++||+||||||+|+++|..|+++|+   +|+|+|+.+.+.- .+              -.+...+.           +.
T Consensus         2 ~~~dVlIVGaGpaGl~~A~~La~~Gi---~v~viE~~~~~~~~~ra~~l~~~~~e~l~~lGl~~~l~~~~~~~~~~~~~~   78 (502)
T PRK06184          2 TTTDVLIVGAGPTGLTLAIELARRGV---SFRLIEKAPEPFPGSRGKGIQPRTQEVFDDLGVLDRVVAAGGLYPPMRIYR   78 (502)
T ss_pred             CCCcEEEECCCHHHHHHHHHHHHCCC---cEEEEeCCCCCCcCccceeecHHHHHHHHHcCcHHHHHhcCccccceeEEe
Confidence            46899999999999999999999998   7999999764310 00              00000000           00


Q ss_pred             CCCCCC--CCC-------C--Cc---cccCCCCCCCCHhHHHHCCcEEEeCCcEEEEeCCCc--EEEe---CCCeEEEec
Q 012165          104 LDKKPA--RLP-------G--FH---TCVGSGGERQTPEWYKEKGIEMIYQDPVTSIDIEKQ--TLIT---NSGKLLKYG  164 (469)
Q Consensus       104 ~~~~~~--~~~-------~--~~---~~~~~~~~~~~~~~~~~~~i~~~~~~~v~~id~~~~--~v~~---~~g~~~~yd  164 (469)
                      ......  .+.       .  +.   ..........+.+.+.+.+++++.++++++++.+..  ++++   .+++++.+|
T Consensus        79 ~~~~~~~~~~~~~~~~~~~~~~~~~~~i~q~~le~~L~~~l~~~gv~i~~~~~v~~i~~~~~~v~v~~~~~~~~~~i~a~  158 (502)
T PRK06184         79 DDGSVAESDMFAHLEPTPDEPYPLPLMVPQWRTERILRERLAELGHRVEFGCELVGFEQDADGVTARVAGPAGEETVRAR  158 (502)
T ss_pred             CCceEEEeeccccccCCCCCCCCcceecCHHHHHHHHHHHHHHCCCEEEeCcEEEEEEEcCCcEEEEEEeCCCeEEEEeC
Confidence            000000  000       0  00   000000001122334566899999999999976544  3444   556789999


Q ss_pred             cEEeccCCCC
Q 012165          165 SLIVATGCTA  174 (469)
Q Consensus       165 ~lVlAtG~~~  174 (469)
                      +||.|+|.+.
T Consensus       159 ~vVgADG~~S  168 (502)
T PRK06184        159 YLVGADGGRS  168 (502)
T ss_pred             EEEECCCCch
Confidence            9999999774

>PF01266 DAO: FAD dependent oxidoreductase; InterPro: IPR006076 This entry includes various FAD dependent oxidoreductases: Glycerol-3-phosphate dehydrogenase (1

Probab=98.59  E-value=2.8e-07  Score=90.81  Aligned_cols=61  Identities=30%  Similarity=0.510  Sum_probs=46.2

Q ss_pred             eeHHHHHHcCcEEEcCCeEEEEEeCCCCcEEEEEcCCCCEEeCCEEEEccCCccCCchhhhcCC
Q 012165          235 RYEQLYQQNGVKFVKGASIKNLEAGSDGRVAAVKLEDGSTIDADTIVIGIGAKPTVSPFERVGL  298 (469)
Q Consensus       235 ~~~~~l~~~gV~~~~~~~v~~i~~~~~~~v~~v~~~~g~~i~~D~vi~a~G~~p~~~~~~~~gl  298 (469)
                      .+.+.+++.|++++.+++|+++..+ ++.+.+|.+++|+ +.+|.||+|+|.... .++..++.
T Consensus       152 ~l~~~~~~~Gv~i~~~~~V~~i~~~-~~~v~gv~~~~g~-i~ad~vV~a~G~~s~-~l~~~~~~  212 (358)
T PF01266_consen  152 ALAAEAQRAGVEIRTGTEVTSIDVD-GGRVTGVRTSDGE-IRADRVVLAAGAWSP-QLLPLLGL  212 (358)
T ss_dssp             HHHHHHHHTT-EEEESEEEEEEEEE-TTEEEEEEETTEE-EEECEEEE--GGGHH-HHHHTTTT
T ss_pred             hhHHHHHHhhhhccccccccchhhc-ccccccccccccc-cccceeEecccccce-eeeecccc
Confidence            5566778889999999999999864 5667679999997 999999999998654 35555544

1.99.5 from EC), Sarcosine oxidase beta subunit (1.5.3.1 from EC), D-alanine oxidase (1.4.99.1 from EC), D-aspartate oxidase (1.4.3.1 from EC). D-amino acid oxidase (1.4.3.3 from EC) (DAMOX or DAO) is an FAD flavoenzyme that catalyzes the oxidation of neutral and basic D-amino acids into their corresponding keto acids. DAOs have been characterised and sequenced in fungi and vertebrates where they are known to be located in the peroxisomes. D-aspartate oxidase (1.4.3.1 from EC) (DASOX) [] is an enzyme, structurally related to DAO, which catalyzes the same reaction but is active only toward dicarboxylic D-amino acids. In DAO, a conserved histidine has been shown [] to be important for the enzyme's catalytic activity.; GO: 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 2RGO_A 3NYE_A 3NYF_A 3NYC_A 3SM8_A 3SGL_A 3PVC_A 3DME_A 2GAH_B 3NLC_A ....

>PRK08773 2-octaprenyl-3-methyl-6-methoxy-1,4-benzoquinol hydroxylase; Validated

Probab=98.58  E-value=2e-07  Score=93.38  Aligned_cols=124  Identities=18%  Similarity=0.316  Sum_probs=74.5

Q ss_pred             CCCCCcEEEEcCcHHHHHHHHHHHHcCCCCCcEEEEcCCCCCCCCC--CC-----Ccc---ccc-----CCCC-C-CCCC
Q 012165           48 ANENREFVIVGGGNAAGYAARTFVEHGMADGRLCIVSKEAYAPYER--PA-----LTK---GYL-----FPLD-K-KPAR  110 (469)
Q Consensus        48 ~~~~~~vvIIGgG~AGl~aA~~L~~~g~~~~~V~vie~~~~~~~~~--~~-----l~~---~~~-----~~~~-~-~~~~  110 (469)
                      +..++||+|||||++|+++|..|+++|+   +|+|+|+.+...+..  +.     ++.   ..+     ...- . ....
T Consensus         3 ~~~~~dV~IvGaG~aGl~~A~~La~~G~---~v~liE~~~~~~~~~~~~~~r~~~l~~~~~~~l~~lGl~~~~~~~~~~~   79 (392)
T PRK08773          3 RRSRRDAVIVGGGVVGAACALALADAGL---SVALVEGREPPRWQADQPDLRVYAFAADNAALLDRLGVWPAVRAARAQP   79 (392)
T ss_pred             CCCCCCEEEECcCHHHHHHHHHHhcCCC---EEEEEeCCCCcccccCCCCCEEEEecHHHHHHHHHCCchhhhhHhhCCc
Confidence            3556899999999999999999999998   799999976432210  00     100   000     0000 0 0000


Q ss_pred             CCCCc----------cc----cCCC----------CCCCCHhHHHHCCcEEEeCCcEEEEeCCCc--EEEeCCCeEEEec
Q 012165          111 LPGFH----------TC----VGSG----------GERQTPEWYKEKGIEMIYQDPVTSIDIEKQ--TLITNSGKLLKYG  164 (469)
Q Consensus       111 ~~~~~----------~~----~~~~----------~~~~~~~~~~~~~i~~~~~~~v~~id~~~~--~v~~~~g~~~~yd  164 (469)
                      +..+.          ..    .+..          ....+.+.+++.+++++.+++|+++..++.  ++++++|+++.+|
T Consensus        80 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~l~~~L~~~~~~~gv~i~~~~~v~~i~~~~~~v~v~~~~g~~~~a~  159 (392)
T PRK08773         80 YRRMRVWDAGGGGELGFDADTLGREQLGWIVENDLLVDRLWAALHAAGVQLHCPARVVALEQDADRVRLRLDDGRRLEAA  159 (392)
T ss_pred             ccEEEEEeCCCCceEEechhccCCCcCEEEEEhHHHHHHHHHHHHhCCCEEEcCCeEEEEEecCCeEEEEECCCCEEEeC
Confidence            00000          00    0000          000011224557999999999999876544  5667788889999


Q ss_pred             cEEeccCCCC
Q 012165          165 SLIVATGCTA  174 (469)
Q Consensus       165 ~lVlAtG~~~  174 (469)
                      .||.|+|...
T Consensus       160 ~vV~AdG~~S  169 (392)
T PRK08773        160 LAIAADGAAS  169 (392)
T ss_pred             EEEEecCCCc
Confidence            9999999875

>TIGR00292 thiazole biosynthesis enzyme

Probab=98.57  E-value=1.6e-07  Score=87.49  Aligned_cols=122  Identities=14%  Similarity=0.161  Sum_probs=69.2

Q ss_pred             CCCCcEEEEcCcHHHHHHHHHHHHcCCCCCcEEEEcCCCCCCCCCC----CCcc--------cccCCCCCCCCCC-CCCc
Q 012165           49 NENREFVIVGGGNAAGYAARTFVEHGMADGRLCIVSKEAYAPYERP----ALTK--------GYLFPLDKKPARL-PGFH  115 (469)
Q Consensus        49 ~~~~~vvIIGgG~AGl~aA~~L~~~g~~~~~V~vie~~~~~~~~~~----~l~~--------~~~~~~~~~~~~~-~~~~  115 (469)
                      ...+||+|||||+||++||..|++.|.   +|+|+|+...++....    .++.        .++.......... .++.
T Consensus        19 ~~~~DVvIVGgGpAGL~aA~~la~~G~---~V~vlEk~~~~Ggg~~~gg~~~~~~~~~~~~~~~l~~~gi~~~~~~~g~~   95 (254)
T TIGR00292        19 YAESDVIIVGAGPSGLTAAYYLAKNGL---KVCVLERSLAFGGGSWGGGMLFSKIVVEKPAHEILDEFGIRYEDEGDGYV   95 (254)
T ss_pred             hcCCCEEEECCCHHHHHHHHHHHHCCC---cEEEEecCCCCCccccCCCcceecccccchHHHHHHHCCCCeeeccCceE
Confidence            346899999999999999999999987   7999999876532100    0000        0000000000000 0000


Q ss_pred             cccCCCCCCCCHhHHHHCCcEEEeCCcEEEEeCCCc--E---EEeC-----------CCeEEEeccEEeccCCC
Q 012165          116 TCVGSGGERQTPEWYKEKGIEMIYQDPVTSIDIEKQ--T---LITN-----------SGKLLKYGSLIVATGCT  173 (469)
Q Consensus       116 ~~~~~~~~~~~~~~~~~~~i~~~~~~~v~~id~~~~--~---v~~~-----------~g~~~~yd~lVlAtG~~  173 (469)
                      ..........+.+...+.+++++.++.+..+..++.  .   |.+.           +...+.++.+|.|||..
T Consensus        96 ~~~~~el~~~L~~~a~e~GV~I~~~t~V~dli~~~~~~~V~GVv~~~~~v~~~g~~~d~~~i~Ak~VVdATG~~  169 (254)
T TIGR00292        96 VADSAEFISTLASKALQAGAKIFNGTSVEDLITRDDTVGVAGVVINWSAIELAGLHVDPLTQRSRVVVDATGHD  169 (254)
T ss_pred             EeeHHHHHHHHHHHHHHcCCEEECCcEEEEEEEeCCCCceEEEEeCCccccccCCCCCCEEEEcCEEEEeecCC
Confidence            000000011122334567999999988988765332  2   2222           12468899999999954

This enzyme is involved in the biosynthesis of the thiamine precursor thiazole, and is repressed by thiamine.This family includes c-thi1, a Citrus gene induced during natural and ethylene induced fruit maturation and is highly homologous to plant and yeast thi genes involved in thiamine biosynthesis.

>PRK07333 2-octaprenyl-6-methoxyphenyl hydroxylase; Provisional

Probab=98.57  E-value=2.6e-07  Score=92.99  Aligned_cols=124  Identities=19%  Similarity=0.225  Sum_probs=73.1

Q ss_pred             CCcEEEEcCcHHHHHHHHHHHHcCCCCCcEEEEcCCCCCCCC---CC-CC-------------ccccc-----------C
Q 012165           51 NREFVIVGGGNAAGYAARTFVEHGMADGRLCIVSKEAYAPYE---RP-AL-------------TKGYL-----------F  102 (469)
Q Consensus        51 ~~~vvIIGgG~AGl~aA~~L~~~g~~~~~V~vie~~~~~~~~---~~-~l-------------~~~~~-----------~  102 (469)
                      ++||+|||||++|+++|..|+++|. ..+|+|+|+.+.....   +. .+             ...+.           .
T Consensus         1 ~~dv~IvGaG~aGl~~A~~L~~~g~-g~~v~liE~~~~~~~~~~~~~~~l~~~~~~~l~~lGl~~~~~~~~~~~~~~~~~   79 (403)
T PRK07333          1 QCDVVIAGGGYVGLALAVALKQAAP-HLPVTVVDAAPAGAWSRDPRASAIAAAARRMLEALGVWDEIAPEAQPITDMVIT   79 (403)
T ss_pred             CCCEEEECccHHHHHHHHHHhcCCC-CCEEEEEeCCCcccCCCCcceEEecHHHHHHHHHCCChhhhhhhcCcccEEEEE
Confidence            4799999999999999999999862 3489999997642110   00 00             00000           0


Q ss_pred             C-CCCCCCC--CCCCccc--cCC---------CCCCCCHhHHHHCCcEEEeCCcEEEEeCCCc--EEEeCCCeEEEeccE
Q 012165          103 P-LDKKPAR--LPGFHTC--VGS---------GGERQTPEWYKEKGIEMIYQDPVTSIDIEKQ--TLITNSGKLLKYGSL  166 (469)
Q Consensus       103 ~-~~~~~~~--~~~~~~~--~~~---------~~~~~~~~~~~~~~i~~~~~~~v~~id~~~~--~v~~~~g~~~~yd~l  166 (469)
                      . .......  ...+...  .+.         .....+.+.+.+.+++++.+++|++++.+..  .+++.+|.++.+|.|
T Consensus        80 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~r~~l~~~L~~~~~~~gv~v~~~~~v~~i~~~~~~v~v~~~~g~~~~ad~v  159 (403)
T PRK07333         80 DSRTSDPVRPVFLTFEGEVEPGEPFAHMVENRVLINALRKRAEALGIDLREATSVTDFETRDEGVTVTLSDGSVLEARLL  159 (403)
T ss_pred             eCCCCCCCccceEEecccccCCCccEEEeEhHHHHHHHHHHHHhCCCEEEcCCEEEEEEEcCCEEEEEECCCCEEEeCEE
Confidence            0 0000000  0000000  000         0011122334556999999999999976554  466778888999999


Q ss_pred             EeccCCCCC
Q 012165          167 IVATGCTAS  175 (469)
Q Consensus       167 VlAtG~~~~  175 (469)
                      |.|+|....
T Consensus       160 I~AdG~~S~  168 (403)
T PRK07333        160 VAADGARSK  168 (403)
T ss_pred             EEcCCCChH
Confidence            999997643

>PRK12842 putative succinate dehydrogenase; Reviewed

Probab=98.56  E-value=2.5e-07  Score=97.07  Aligned_cols=85  Identities=19%  Similarity=0.275  Sum_probs=62.2

Q ss_pred             hhcCCeEEEEcCCh--HHHHHHHHHHhCCCeEe--------------------------------eeHHHHHHcCcEEEc
Q 012165          204 LEKAKKVVVVGGGY--IGMEVAAAAVGWKLDTT--------------------------------RYEQLYQQNGVKFVK  249 (469)
Q Consensus       204 ~~~~~~vvVvG~G~--~g~e~A~~l~~~g~~v~--------------------------------~~~~~l~~~gV~~~~  249 (469)
                      ....+++.|+|++.  ++.+++..+...+..+.                                .+.+.+++.|++++.
T Consensus       154 ~~~~~~~~~~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~g~~~~~G~~l~~~L~~~~~~~Gv~i~~  233 (574)
T PRK12842        154 RPPLKTITFIGMMFNSSNADLKHFFNATRSLTSFIYVAKRLATHLKDLALYRRGTQVTSGNALAARLAKSALDLGIPILT  233 (574)
T ss_pred             cCCcccccccceecccchHHHHHHHhhccchhHHHHHHHHHHhhHHHHhhccCCcccccHHHHHHHHHHHHHhCCCEEEe
Confidence            34567888999988  78888877765444332                                245567789999999


Q ss_pred             CCeEEEEEeCCCCcEEEEEcCC--CC-EEeCC-EEEEccCCccC
Q 012165          250 GASIKNLEAGSDGRVAAVKLED--GS-TIDAD-TIVIGIGAKPT  289 (469)
Q Consensus       250 ~~~v~~i~~~~~~~v~~v~~~~--g~-~i~~D-~vi~a~G~~p~  289 (469)
                      ++.++++..+ ++++.+|...+  ++ .+.++ .||+|+|..++
T Consensus       234 ~~~v~~l~~~-~g~V~GV~~~~~~~~~~i~a~k~VVlAtGg~~~  276 (574)
T PRK12842        234 GTPARELLTE-GGRVVGARVIDAGGERRITARRGVVLACGGFSH  276 (574)
T ss_pred             CCEEEEEEee-CCEEEEEEEEcCCceEEEEeCCEEEEcCCCccc
Confidence            9999999854 67777776643  33 47786 79999997764

>PRK08071 L-aspartate oxidase; Provisional

Probab=98.54  E-value=1.4e-06  Score=89.97  Aligned_cols=55  Identities=24%  Similarity=0.401  Sum_probs=38.6

Q ss_pred             CCCEEeCCCCCCCCCceEEeccccccCCccCCcccccchHHHHHHHHHHHHHHHhc
Q 012165          302 VGGIQVDGQFRTRMPGIFAIGDVAAFPLKMYDRTARVEHVDHARQSAQHCIKALLS  357 (469)
Q Consensus       302 ~g~i~Vd~~~~t~~~~Vfa~GD~a~~~~~~~~~~~~~~~~~~A~~~a~~~a~~i~~  357 (469)
                      -|||.||.+.+|++|++||+|+|+.......++.. -.+...+...|+.+++++..
T Consensus       332 ~GGi~vd~~~~t~I~GLyAaGE~a~~g~hGanrl~-g~sl~~~~v~G~~Ag~~aa~  386 (510)
T PRK08071        332 MGGVKTNLDGETSIPGLYAIGEVACTGVHGANRLA-SNSLLEGLVFGKRAAEHILT  386 (510)
T ss_pred             cCCEEECCCCcccCCCeEEcccccccccCCCcccc-hHHHHHHHHHHHHHHHHHHh
Confidence            38899999999999999999999852111111111 22456778888888888754

>TIGR01790 carotene-cycl lycopene cyclase family protein

Probab=98.52  E-value=2.9e-07  Score=92.14  Aligned_cols=118  Identities=15%  Similarity=0.176  Sum_probs=69.0

Q ss_pred             cEEEEcCcHHHHHHHHHHHHcCCCCCcEEEEcCCCCCCCCCC-CCcccccC--CCC-CCCCCCCCCc--------c----
Q 012165           53 EFVIVGGGNAAGYAARTFVEHGMADGRLCIVSKEAYAPYERP-ALTKGYLF--PLD-KKPARLPGFH--------T----  116 (469)
Q Consensus        53 ~vvIIGgG~AGl~aA~~L~~~g~~~~~V~vie~~~~~~~~~~-~l~~~~~~--~~~-~~~~~~~~~~--------~----  116 (469)
                      ||+|||||+||+++|..|++.|+   +|+|||+.+..+..+. .+....+.  ... .....+.+..        .    
T Consensus         1 DviIiGaG~AGl~~A~~la~~g~---~v~liE~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   77 (388)
T TIGR01790         1 DLAVIGGGPAGLAIALELARPGL---RVQLIEPHPPIPGNHTYGVWDDDLSDLGLADCVEHVWPDVYEYRFPKQPRKLGT   77 (388)
T ss_pred             CEEEECCCHHHHHHHHHHHhCCC---eEEEEccCCCCCCCccccccHhhhhhhchhhHHhhcCCCceEEecCCcchhcCC
Confidence            79999999999999999999887   7999999875443211 00000000  000 0000011100        0    


Q ss_pred             ----ccCCCCCCCCHhHHHHCCcEEEeCCcEEEEeCC-C--cEEEeCCCeEEEeccEEeccCCCC
Q 012165          117 ----CVGSGGERQTPEWYKEKGIEMIYQDPVTSIDIE-K--QTLITNSGKLLKYGSLIVATGCTA  174 (469)
Q Consensus       117 ----~~~~~~~~~~~~~~~~~~i~~~~~~~v~~id~~-~--~~v~~~~g~~~~yd~lVlAtG~~~  174 (469)
                          .....+.....+.+.+.+++++. .+|..+..+ .  ..|++++|.+++++.||.|+|..+
T Consensus        78 ~~~~i~~~~l~~~l~~~~~~~gv~~~~-~~v~~i~~~~~~~~~v~~~~g~~~~a~~VI~A~G~~s  141 (388)
T TIGR01790        78 AYGSVDSTRLHEELLQKCPEGGVLWLE-RKAIHAEADGVALSTVYCAGGQRIQARLVIDARGFGP  141 (388)
T ss_pred             ceeEEcHHHHHHHHHHHHHhcCcEEEc-cEEEEEEecCCceeEEEeCCCCEEEeCEEEECCCCch
Confidence                00000001112233556888865 578888655 2  356777887899999999999875

This family includes lycopene beta and epsilion cyclases (which form beta and delta carotene, respectively) from bacteria and plants as well as the plant capsanthin/capsorubin and neoxanthin cyclases which appear to have evolved from the plant lycopene cyclases. The plant lycopene epsilon cyclases also transform neurosporene to alpha zeacarotene.

>PRK09077 L-aspartate oxidase; Provisional

Probab=98.51  E-value=1e-05  Score=84.30  Aligned_cols=55  Identities=29%  Similarity=0.392  Sum_probs=38.2

Q ss_pred             CCCEEeCCCCCCCCCceEEeccccccCCccCCcccccchHHHHHHHHHHHHHHHhc
Q 012165          302 VGGIQVDGQFRTRMPGIFAIGDVAAFPLKMYDRTARVEHVDHARQSAQHCIKALLS  357 (469)
Q Consensus       302 ~g~i~Vd~~~~t~~~~Vfa~GD~a~~~~~~~~~~~~~~~~~~A~~~a~~~a~~i~~  357 (469)
                      -|||.||.+.||++|++||+|+|+.......++.. -.+...+...|+.+++++..
T Consensus       353 ~GGi~vd~~~~t~I~GLyAaGE~a~~g~hGanrl~-gnsl~~~~vfG~~Ag~~aa~  407 (536)
T PRK09077        353 CGGVMVDLHGRTDLDGLYAIGEVSYTGLHGANRMA-SNSLLECLVYGRSAAEDILS  407 (536)
T ss_pred             cCCeeECCCCccccCCEEecccccccccCCCccch-hhhHHHHHHHHHHHHHHHHH
Confidence            58999999999999999999999742111111111 23455677778888887754

>PRK09126 hypothetical protein; Provisional

Probab=98.50  E-value=7.5e-07  Score=89.29  Aligned_cols=123  Identities=22%  Similarity=0.324  Sum_probs=72.2

Q ss_pred             CCCcEEEEcCcHHHHHHHHHHHHcCCCCCcEEEEcCCCCCCCCCCC-------Ccc---cccC--CC-----CCCCCCCC
Q 012165           50 ENREFVIVGGGNAAGYAARTFVEHGMADGRLCIVSKEAYAPYERPA-------LTK---GYLF--PL-----DKKPARLP  112 (469)
Q Consensus        50 ~~~~vvIIGgG~AGl~aA~~L~~~g~~~~~V~vie~~~~~~~~~~~-------l~~---~~~~--~~-----~~~~~~~~  112 (469)
                      +++||+|||||++|+++|..|+++|+   +|+|+|+.+......+.       ++.   ..+.  +.     ........
T Consensus         2 ~~~dviIvGgG~aGl~~A~~L~~~G~---~v~v~E~~~~~~~~~~~~~g~~i~l~~~~~~~L~~lGl~~~~~~~~~~~~~   78 (392)
T PRK09126          2 MHSDIVVVGAGPAGLSFARSLAGSGL---KVTLIERQPLAALADPAFDGREIALTHASREILQRLGAWDRIPEDEISPLR   78 (392)
T ss_pred             CcccEEEECcCHHHHHHHHHHHhCCC---cEEEEeCCCcccccCCCCchhHHHhhHHHHHHHHHCCChhhhccccCCccc
Confidence            46899999999999999999999998   79999998752110000       000   0000  00     00000000


Q ss_pred             CC----------cccc----CCCCC------CCCH----hHH-HHCCcEEEeCCcEEEEeCCCc--EEEeCCCeEEEecc
Q 012165          113 GF----------HTCV----GSGGE------RQTP----EWY-KEKGIEMIYQDPVTSIDIEKQ--TLITNSGKLLKYGS  165 (469)
Q Consensus       113 ~~----------~~~~----~~~~~------~~~~----~~~-~~~~i~~~~~~~v~~id~~~~--~v~~~~g~~~~yd~  165 (469)
                      ..          ....    .....      ....    +.+ +..+++++.+++|+.++.+..  .|++++|+++.+|.
T Consensus        79 ~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~l~~~l~~~~~~~~g~~i~~~~~v~~~~~~~~~~~v~~~~g~~~~a~~  158 (392)
T PRK09126         79 DAKVLNGRSPFALTFDARGRGADALGYLVPNHLIRRAAYEAVSQQDGIELLTGTRVTAVRTDDDGAQVTLANGRRLTARL  158 (392)
T ss_pred             eEEEEcCCCCceeEeehhhcCCCcceEEEeHHHHHHHHHHHHhhCCCcEEEcCCeEEEEEEcCCeEEEEEcCCCEEEeCE
Confidence            00          0000    00000      0001    111 235899999999999876543  56777888899999


Q ss_pred             EEeccCCCCC
Q 012165          166 LIVATGCTAS  175 (469)
Q Consensus       166 lVlAtG~~~~  175 (469)
                      ||.|.|....
T Consensus       159 vI~AdG~~S~  168 (392)
T PRK09126        159 LVAADSRFSA  168 (392)
T ss_pred             EEEeCCCCch
Confidence            9999997653

>PRK07045 putative monooxygenase; Reviewed

Probab=98.50  E-value=2.7e-06  Score=85.21  Aligned_cols=48  Identities=29%  Similarity=0.441  Sum_probs=41.3

Q ss_pred             HcCcEEEcCCeEEEEEeCCCCcEEEEEcCCCCEEeCCEEEEccCCccC
Q 012165          242 QNGVKFVKGASIKNLEAGSDGRVAAVKLEDGSTIDADTIVIGIGAKPT  289 (469)
Q Consensus       242 ~~gV~~~~~~~v~~i~~~~~~~v~~v~~~~g~~i~~D~vi~a~G~~p~  289 (469)
                      ..|++++++++++.++.++++.+..|++++|+++.+|+||-|.|....
T Consensus       119 ~~gv~i~~~~~v~~i~~~~~~~~~~v~~~~g~~~~~~~vIgADG~~S~  166 (388)
T PRK07045        119 LPNVRLRFETSIERIERDADGTVTSVTLSDGERVAPTVLVGADGARSM  166 (388)
T ss_pred             CCCeeEEeCCEEEEEEECCCCcEEEEEeCCCCEEECCEEEECCCCChH
Confidence            468999999999999876666655788899999999999999998764

>PRK08020 ubiF 2-octaprenyl-3-methyl-6-methoxy-1,4-benzoquinol hydroxylase; Reviewed

Probab=98.49  E-value=5.1e-07  Score=90.46  Aligned_cols=123  Identities=18%  Similarity=0.269  Sum_probs=71.6

Q ss_pred             CCCCcEEEEcCcHHHHHHHHHHHHcCCCCCcEEEEcCCCCCCCCCC--------CCc-------c--cccCCCC----CC
Q 012165           49 NENREFVIVGGGNAAGYAARTFVEHGMADGRLCIVSKEAYAPYERP--------ALT-------K--GYLFPLD----KK  107 (469)
Q Consensus        49 ~~~~~vvIIGgG~AGl~aA~~L~~~g~~~~~V~vie~~~~~~~~~~--------~l~-------~--~~~~~~~----~~  107 (469)
                      .+.+||+|||||++|+++|..|++.|+   +|+|+|+.+...+...        .++       +  +++....    ..
T Consensus         3 ~~~~dViIvGgG~aGl~~A~~La~~G~---~V~liE~~~~~~~~~~~~~~~r~~~l~~~~~~~l~~lGl~~~~~~~~~~~   79 (391)
T PRK08020          3 NQPTDIAIVGGGMVGAALALGLAQHGF---SVAVLEHAAPAPFDADSQPDVRISAISAASVALLKGLGVWDAVQAMRSHP   79 (391)
T ss_pred             cccccEEEECcCHHHHHHHHHHhcCCC---EEEEEcCCCCCcccccCCCCceEEeccHHHHHHHHHcCChhhhhhhhCcc
Confidence            455899999999999999999999987   7999998763222100        000       0  0000000    00


Q ss_pred             CCC-----CCC--Cccc---cC-CC--C--C-----CCCHhHHHHC-CcEEEeCCcEEEEeCCCc--EEEeCCCeEEEec
Q 012165          108 PAR-----LPG--FHTC---VG-SG--G--E-----RQTPEWYKEK-GIEMIYQDPVTSIDIEKQ--TLITNSGKLLKYG  164 (469)
Q Consensus       108 ~~~-----~~~--~~~~---~~-~~--~--~-----~~~~~~~~~~-~i~~~~~~~v~~id~~~~--~v~~~~g~~~~yd  164 (469)
                      ...     ...  ....   .. ..  .  .     ..+.+.+... +++++.+++++.+..+..  .|.+++++++.+|
T Consensus        80 ~~~~~~~~~~~~~~~~~~~~~~~~~~g~~i~r~~l~~~L~~~~~~~~gv~i~~~~~v~~i~~~~~~~~v~~~~g~~~~a~  159 (391)
T PRK08020         80 YRRLETWEWETAHVVFDAAELKLPELGYMVENRVLQLALWQALEAHPNVTLRCPASLQALQRDDDGWELTLADGEEIQAK  159 (391)
T ss_pred             cceEEEEeCCCCeEEecccccCCCccEEEEEcHHHHHHHHHHHHcCCCcEEEcCCeeEEEEEcCCeEEEEECCCCEEEeC
Confidence            000     000  0000   00 00  0  0     0011112333 899998899999865443  5667788889999


Q ss_pred             cEEeccCCCC
Q 012165          165 SLIVATGCTA  174 (469)
Q Consensus       165 ~lVlAtG~~~  174 (469)
                      .||.|.|...
T Consensus       160 ~vI~AdG~~S  169 (391)
T PRK08020        160 LVIGADGANS  169 (391)
T ss_pred             EEEEeCCCCc
Confidence            9999999764

>PRK07236 hypothetical protein; Provisional

Probab=98.49  E-value=3.4e-07  Score=91.56  Aligned_cols=123  Identities=13%  Similarity=0.085  Sum_probs=71.4

Q ss_pred             CCCCcEEEEcCcHHHHHHHHHHHHcCCCCCcEEEEcCCCCCCCCCC-C--Cccc---ccC--CCC-CCCCCCC--CCc--
Q 012165           49 NENREFVIVGGGNAAGYAARTFVEHGMADGRLCIVSKEAYAPYERP-A--LTKG---YLF--PLD-KKPARLP--GFH--  115 (469)
Q Consensus        49 ~~~~~vvIIGgG~AGl~aA~~L~~~g~~~~~V~vie~~~~~~~~~~-~--l~~~---~~~--~~~-~~~~~~~--~~~--  115 (469)
                      +++.+|+|||||++|+++|..|++.|+   +|+|+|+.+.....+. .  +...   .+.  +.. ......+  ...  
T Consensus         4 ~~~~~ViIVGaG~aGl~~A~~L~~~G~---~v~v~E~~~~~~~~~g~gi~l~~~~~~~l~~lg~~~~~~~~~~~~~~~~~   80 (386)
T PRK07236          4 MSGPRAVVIGGSLGGLFAALLLRRAGW---DVDVFERSPTELDGRGAGIVLQPELLRALAEAGVALPADIGVPSRERIYL   80 (386)
T ss_pred             CCCCeEEEECCCHHHHHHHHHHHhCCC---CEEEEecCCCCcCCCCceeEeCHHHHHHHHHcCCCcccccccCccceEEE
Confidence            556899999999999999999999998   7999999864311110 0  1100   000  000 0000000  000  


Q ss_pred             cccCC-----CC---C---CCCHhHHH-H-CCcEEEeCCcEEEEeCCCc--EEEeCCCeEEEeccEEeccCCCC
Q 012165          116 TCVGS-----GG---E---RQTPEWYK-E-KGIEMIYQDPVTSIDIEKQ--TLITNSGKLLKYGSLIVATGCTA  174 (469)
Q Consensus       116 ~~~~~-----~~---~---~~~~~~~~-~-~~i~~~~~~~v~~id~~~~--~v~~~~g~~~~yd~lVlAtG~~~  174 (469)
                      ...+.     ..   .   ..+...+. . .+++++.+++|+++..+..  ++++.+|+++.+|.||.|-|...
T Consensus        81 ~~~g~~~~~~~~~~~~~~~~~l~~~L~~~~~~~~i~~~~~v~~i~~~~~~v~v~~~~g~~~~ad~vIgADG~~S  154 (386)
T PRK07236         81 DRDGRVVQRRPMPQTQTSWNVLYRALRAAFPAERYHLGETLVGFEQDGDRVTARFADGRRETADLLVGADGGRS  154 (386)
T ss_pred             eCCCCEeeccCCCccccCHHHHHHHHHHhCCCcEEEcCCEEEEEEecCCeEEEEECCCCEEEeCEEEECCCCCc
Confidence            00000     00   0   00111111 1 2467889999999976554  56778898999999999999654

>PRK07494 2-octaprenyl-6-methoxyphenyl hydroxylase; Provisional

Probab=98.49  E-value=1e-06  Score=88.12  Aligned_cols=40  Identities=25%  Similarity=0.419  Sum_probs=35.0

Q ss_pred             CCCCCCcEEEEcCcHHHHHHHHHHHHcCCCCCcEEEEcCCCCC
Q 012165           47 FANENREFVIVGGGNAAGYAARTFVEHGMADGRLCIVSKEAYA   89 (469)
Q Consensus        47 ~~~~~~~vvIIGgG~AGl~aA~~L~~~g~~~~~V~vie~~~~~   89 (469)
                      |++..+||+|||||++|+++|..|++.|+   +|+|+|+.+..
T Consensus         3 ~~~~~~dViIVGaG~~Gl~~A~~L~~~G~---~v~liE~~~~~   42 (388)
T PRK07494          3 MEKEHTDIAVIGGGPAGLAAAIALARAGA---SVALVAPEPPY   42 (388)
T ss_pred             CCCCCCCEEEECcCHHHHHHHHHHhcCCC---eEEEEeCCCCC
Confidence            44566899999999999999999999987   79999998653

>COG0654 UbiH 2-polyprenyl-6-methoxyphenol hydroxylase and related FAD-dependent oxidoreductases [Coenzyme metabolism / Energy production and conversion]

Probab=98.48  E-value=2.5e-06  Score=85.31  Aligned_cols=51  Identities=31%  Similarity=0.397  Sum_probs=39.7

Q ss_pred             HHHHHHc-CcEEEcCCeEEEEEeCCCCcEEEEEcC-CCCEEeCCEEEEccCCccC
Q 012165          237 EQLYQQN-GVKFVKGASIKNLEAGSDGRVAAVKLE-DGSTIDADTIVIGIGAKPT  289 (469)
Q Consensus       237 ~~~l~~~-gV~~~~~~~v~~i~~~~~~~v~~v~~~-~g~~i~~D~vi~a~G~~p~  289 (469)
                      .+.+.+. +|+++.+++|+.++.++ +.+. ++++ ||+++.||+||-|=|....
T Consensus       111 ~~~~~~~~~v~~~~~~~v~~~~~~~-~~v~-v~l~~dG~~~~a~llVgADG~~S~  163 (387)
T COG0654         111 LEAARALPNVTLRFGAEVEAVEQDG-DGVT-VTLSFDGETLDADLLVGADGANSA  163 (387)
T ss_pred             HHHHhhCCCcEEEcCceEEEEEEcC-CceE-EEEcCCCcEEecCEEEECCCCchH
Confidence            3445544 49999999999999654 4443 7777 9999999999999997653

>PRK13977 myosin-cross-reactive antigen; Provisional

Probab=98.48  E-value=1e-06  Score=89.85  Aligned_cols=73  Identities=15%  Similarity=0.263  Sum_probs=53.3

Q ss_pred             ChHHHHHHHHHHhCCCe-----------Ee----------eeHHHHHHcCcEEEcCCeEEEEEeC-CC--CcEEEEEcC-
Q 012165          216 GYIGMEVAAAAVGWKLD-----------TT----------RYEQLYQQNGVKFVKGASIKNLEAG-SD--GRVAAVKLE-  270 (469)
Q Consensus       216 G~~g~e~A~~l~~~g~~-----------v~----------~~~~~l~~~gV~~~~~~~v~~i~~~-~~--~~v~~v~~~-  270 (469)
                      =.++.|+..++.+.-.+           .+          -+.+.++++||+|+++++|+++..+ ++  +++.++... 
T Consensus       191 whSA~E~rry~~rf~~~~~~l~~~s~l~ft~ynqyeSLV~PL~~~Le~~GV~f~~~t~VtdL~~~~d~~~~~VtgI~~~~  270 (576)
T PRK13977        191 WHSALEMRRYMHRFIHHIGGLPDLSGLKFTKYNQYESLVLPLIKYLEDHGVDFQYGTKVTDIDFDITGGKKTATAIHLTR  270 (576)
T ss_pred             hhHHHHHHHHHHHHHHhhccCCccccccCCCCCchhHHHHHHHHHHHhCCCEEEeCCEEEEEEEcCCCCceEEEEEEEEe
Confidence            35788888888654111           11          5678899999999999999999864 23  668888775 


Q ss_pred             CCC-----EEeCCEEEEccCCcc
Q 012165          271 DGS-----TIDADTIVIGIGAKP  288 (469)
Q Consensus       271 ~g~-----~i~~D~vi~a~G~~p  288 (469)
                      +|.     ..+.|.||+++|.-.
T Consensus       271 ~~~~~~I~l~~~DlVivTnGs~t  293 (576)
T PRK13977        271 NGKEETIDLTEDDLVFVTNGSIT  293 (576)
T ss_pred             CCceeEEEecCCCEEEEeCCcCc
Confidence            332     357899999999643

>TIGR03385 CoA_CoA_reduc CoA-disulfide reductase

Probab=98.47  E-value=5.9e-07  Score=91.09  Aligned_cols=98  Identities=21%  Similarity=0.322  Sum_probs=74.9

Q ss_pred             CCcEEEEcCcHHHHHHHHHHHHcCCCCCcEEEEcCCCCCCCCCCCCcccccCCCCCCCCCCCCCccccCCCCCCCCHhHH
Q 012165           51 NREFVIVGGGNAAGYAARTFVEHGMADGRLCIVSKEAYAPYERPALTKGYLFPLDKKPARLPGFHTCVGSGGERQTPEWY  130 (469)
Q Consensus        51 ~~~vvIIGgG~AGl~aA~~L~~~g~~~~~V~vie~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  130 (469)
                      .++|+|||||++|+.+|..|++.|.   +|+++++.+... . +.+.           ..+           .....+.+
T Consensus       137 ~~~vvViGgG~~g~e~A~~l~~~g~---~Vtli~~~~~~~-~-~~~~-----------~~~-----------~~~~~~~l  189 (427)
T TIGR03385       137 VENVVIIGGGYIGIEMAEALRERGK---NVTLIHRSERIL-N-KLFD-----------EEM-----------NQIVEEEL  189 (427)
T ss_pred             CCeEEEECCCHHHHHHHHHHHhCCC---cEEEEECCcccC-c-cccC-----------HHH-----------HHHHHHHH
Confidence            4799999999999999999999876   799999776420 0 0000           000           11235667


Q ss_pred             HHCCcEEEeCCcEEEEeCCCcEEEeCCCeEEEeccEEeccCCCCC
Q 012165          131 KEKGIEMIYQDPVTSIDIEKQTLITNSGKLLKYGSLIVATGCTAS  175 (469)
Q Consensus       131 ~~~~i~~~~~~~v~~id~~~~~v~~~~g~~~~yd~lVlAtG~~~~  175 (469)
                      ++.||+++.++++.+++.++..+.+.+|++++||.||+|+|.+|.
T Consensus       190 ~~~gV~v~~~~~v~~i~~~~~~v~~~~g~~i~~D~vi~a~G~~p~  234 (427)
T TIGR03385       190 KKHEINLRLNEEVDSIEGEERVKVFTSGGVYQADMVILATGIKPN  234 (427)
T ss_pred             HHcCCEEEeCCEEEEEecCCCEEEEcCCCEEEeCEEEECCCccCC
Confidence            889999999999999988766556678888999999999998875

Members of this protein family are CoA-disulfide reductase (EC 1.8.1.14), as characterized in Staphylococcus aureus, Pyrococcus horikoshii, and Borrelia burgdorferi, and inferred in several other species on the basis of high levels of CoA and an absence of glutathione as a protective thiol.

>PRK08244 hypothetical protein; Provisional

Probab=98.47  E-value=6.4e-07  Score=92.58  Aligned_cols=121  Identities=17%  Similarity=0.325  Sum_probs=70.5

Q ss_pred             CCcEEEEcCcHHHHHHHHHHHHcCCCCCcEEEEcCCCCCC-CCC--------------CCCcccccCCCC----------
Q 012165           51 NREFVIVGGGNAAGYAARTFVEHGMADGRLCIVSKEAYAP-YER--------------PALTKGYLFPLD----------  105 (469)
Q Consensus        51 ~~~vvIIGgG~AGl~aA~~L~~~g~~~~~V~vie~~~~~~-~~~--------------~~l~~~~~~~~~----------  105 (469)
                      ++||+||||||+|+++|..|++.|+   +|+|||+.+... ..+              ..+...+.....          
T Consensus         2 ~~dVlIVGaGpaGl~lA~~L~~~G~---~v~viEr~~~~~~~~ra~~l~~~~~e~l~~lGl~~~l~~~~~~~~~~~~~~~   78 (493)
T PRK08244          2 KYEVIIIGGGPVGLMLASELALAGV---KTCVIERLKETVPYSKALTLHPRTLEILDMRGLLERFLEKGRKLPSGHFAGL   78 (493)
T ss_pred             CCCEEEECCCHHHHHHHHHHHHCCC---cEEEEecCCCCCCCcceeEecHHHHHHHHhcCcHHHHHhhcccccceEEecc
Confidence            4799999999999999999999998   799999976531 110              001000000000          


Q ss_pred             CCCCCCCCCcc------ccC-CCCCCCCHhHHHHCCcEEEeCCcEEEEeCCCc--EEEeC--CC-eEEEeccEEeccCCC
Q 012165          106 KKPARLPGFHT------CVG-SGGERQTPEWYKEKGIEMIYQDPVTSIDIEKQ--TLITN--SG-KLLKYGSLIVATGCT  173 (469)
Q Consensus       106 ~~~~~~~~~~~------~~~-~~~~~~~~~~~~~~~i~~~~~~~v~~id~~~~--~v~~~--~g-~~~~yd~lVlAtG~~  173 (469)
                      ....++.....      ... ......+.+.+++.+++++.+++++++..++.  ++++.  +| +++++|+||.|.|.+
T Consensus        79 ~~~~~~~~~~~~~~~~~~i~q~~le~~L~~~~~~~gv~v~~~~~v~~i~~~~~~v~v~~~~~~g~~~i~a~~vVgADG~~  158 (493)
T PRK08244         79 DTRLDFSALDTSSNYTLFLPQAETEKVLEEHARSLGVEIFRGAEVLAVRQDGDGVEVVVRGPDGLRTLTSSYVVGADGAG  158 (493)
T ss_pred             cccCCcccCCCCCCcEEEecHHHHHHHHHHHHHHcCCeEEeCCEEEEEEEcCCeEEEEEEeCCccEEEEeCEEEECCCCC
Confidence            00000000000      000 00001112334567999999999999876554  33443  45 479999999999976


Q ss_pred             C
Q 012165          174 A  174 (469)
Q Consensus       174 ~  174 (469)
                      .
T Consensus       159 S  159 (493)
T PRK08244        159 S  159 (493)
T ss_pred             h
Confidence            5

>PRK07251 pyridine nucleotide-disulfide oxidoreductase; Provisional

Probab=98.46  E-value=5.8e-07  Score=91.46  Aligned_cols=98  Identities=15%  Similarity=0.292  Sum_probs=73.2

Q ss_pred             CCCcEEEEcCcHHHHHHHHHHHHcCCCCCcEEEEcCCCCCCCCCCCCcccccCCCCCCCCCCCCCccccCCCCCCCCHhH
Q 012165           50 ENREFVIVGGGNAAGYAARTFVEHGMADGRLCIVSKEAYAPYERPALTKGYLFPLDKKPARLPGFHTCVGSGGERQTPEW  129 (469)
Q Consensus        50 ~~~~vvIIGgG~AGl~aA~~L~~~g~~~~~V~vie~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  129 (469)
                      ..++|+|||||+.|+.+|..|++.|.   +|+++++.+.+.           .....   .+           .....+.
T Consensus       156 ~~~~vvIIGgG~~g~e~A~~l~~~g~---~Vtli~~~~~~l-----------~~~~~---~~-----------~~~~~~~  207 (438)
T PRK07251        156 LPERLGIIGGGNIGLEFAGLYNKLGS---KVTVLDAASTIL-----------PREEP---SV-----------AALAKQY  207 (438)
T ss_pred             cCCeEEEECCCHHHHHHHHHHHHcCC---eEEEEecCCccC-----------CCCCH---HH-----------HHHHHHH
Confidence            35689999999999999999999876   799999876431           00000   00           0123466


Q ss_pred             HHHCCcEEEeCCcEEEEeCCCcEE-EeCCCeEEEeccEEeccCCCCC
Q 012165          130 YKEKGIEMIYQDPVTSIDIEKQTL-ITNSGKLLKYGSLIVATGCTAS  175 (469)
Q Consensus       130 ~~~~~i~~~~~~~v~~id~~~~~v-~~~~g~~~~yd~lVlAtG~~~~  175 (469)
                      +++.|++++.++++.+++.++..+ ...++++++||.+++|+|.+|.
T Consensus       208 l~~~GI~i~~~~~V~~i~~~~~~v~v~~~g~~i~~D~viva~G~~p~  254 (438)
T PRK07251        208 MEEDGITFLLNAHTTEVKNDGDQVLVVTEDETYRFDALLYATGRKPN  254 (438)
T ss_pred             HHHcCCEEEcCCEEEEEEecCCEEEEEECCeEEEcCEEEEeeCCCCC
Confidence            788999999999999998765433 3345678999999999999886

>PF00070 Pyr_redox: Pyridine nucleotide-disulphide oxidoreductase; InterPro: IPR001327 FAD flavoproteins belonging to the family of pyridine nucleotide-disulphide oxidoreductases (glutathione reductase, trypanothione reductase, lipoamide dehydrogenase, mercuric reductase, thioredoxin reductase, alkyl hydroperoxide reductase) share sequence similarity with a number of other flavoprotein oxidoreductases, in particular with ferredoxin-NAD+ reductases involved in oxidative metabolism of a variety of hydrocarbons (rubredoxin reductase, putidaredoxin reductase, terpredoxin reductase, ferredoxin-NAD+ reductase components of benzene 1,2-dioxygenase, toluene 1,2-dioxygenase, chlorobenzene dioxygenase, biphenyl dioxygenase), NADH oxidase and NADH peroxidase [, , ]

Probab=98.46  E-value=2.1e-07  Score=70.45  Aligned_cols=78  Identities=18%  Similarity=0.376  Sum_probs=58.4

Q ss_pred             cEEEEcCcHHHHHHHHHHHHcCCCCCcEEEEcCCCCCCCCCCCCcccccCCCCCCCCCCCCCccccCCCCCCCCHhHHHH
Q 012165           53 EFVIVGGGNAAGYAARTFVEHGMADGRLCIVSKEAYAPYERPALTKGYLFPLDKKPARLPGFHTCVGSGGERQTPEWYKE  132 (469)
Q Consensus        53 ~vvIIGgG~AGl~aA~~L~~~g~~~~~V~vie~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  132 (469)
                      +++|||||+.|+.+|..|++.|.   +|+|++..+.+.   +.+..        ..              .....+++++
T Consensus         1 ~vvViGgG~ig~E~A~~l~~~g~---~vtli~~~~~~~---~~~~~--------~~--------------~~~~~~~l~~   52 (80)
T PF00070_consen    1 RVVVIGGGFIGIELAEALAELGK---EVTLIERSDRLL---PGFDP--------DA--------------AKILEEYLRK   52 (80)
T ss_dssp             EEEEESSSHHHHHHHHHHHHTTS---EEEEEESSSSSS---TTSSH--------HH--------------HHHHHHHHHH
T ss_pred             CEEEECcCHHHHHHHHHHHHhCc---EEEEEeccchhh---hhcCH--------HH--------------HHHHHHHHHH
Confidence            58999999999999999999886   899999887642   11110        00              1234567889


Q ss_pred             CCcEEEeCCcEEEEeCCCcE--EEeCCC
Q 012165          133 KGIEMIYQDPVTSIDIEKQT--LITNSG  158 (469)
Q Consensus       133 ~~i~~~~~~~v~~id~~~~~--v~~~~g  158 (469)
                      .|+++++++.+.+++.+...  |+++||
T Consensus        53 ~gV~v~~~~~v~~i~~~~~~~~V~~~~g   80 (80)
T PF00070_consen   53 RGVEVHTNTKVKEIEKDGDGVEVTLEDG   80 (80)
T ss_dssp             TTEEEEESEEEEEEEEETTSEEEEEETS
T ss_pred             CCCEEEeCCEEEEEEEeCCEEEEEEecC
Confidence            99999999999999876543  666654

Comparison of the crystal structures of human glutathione reductase and Escherichia coli thioredoxin reductase reveals different locations of their active sites, suggesting that the enzymes diverged from an ancestral FAD/NAD(P)H reductase and acquired their disulphide reductase activities independently []. Despite functional similarities, oxidoreductases of this family show no sequence similarity with adrenodoxin reductases [] and flavoprotein pyridine nucleotide cytochrome reductases (FPNCR) []. Assuming that disulphide reductase activity emerged later, during divergent evolution, the family can be referred to as FAD-dependent pyridine nucleotide reductases, FADPNR. To date, 3D structures of glutathione reductase [], thioredoxin reductase [], mercuric reductase [], lipoamide dehydrogenase [], trypanothione reductase [] and NADH peroxidase [] have been solved. The enzymes share similar tertiary structures based on a doubly-wound alpha/beta fold, but the relative orientations of their FAD- and NAD(P)H-binding domains may vary significantly. By contrast with the FPNCR family, the folds of the FAD- and NAD(P)H-binding domains are similar, suggesting that the domains evolved by gene duplication []. This entry describes a small NADH binding domain within a larger FAD binding domain described by IPR023753 from INTERPRO. It is found in both class I and class II oxidoreductases. ; GO: 0016491 oxidoreductase activity, 0050660 flavin adenine dinucleotide binding, 0055114 oxidation-reduction process; PDB: 1ZKQ_A 3DGZ_A 1ZDL_A 2R9Z_B 2RAB_A 2A87_B 1M6I_A 2YVG_A 2GR1_A 2GQW_A ....

>PLN02697 lycopene epsilon cyclase

Probab=98.44  E-value=6e-07  Score=92.17  Aligned_cols=119  Identities=13%  Similarity=0.204  Sum_probs=68.4

Q ss_pred             CCCcEEEEcCcHHHHHHHHHHHHcCCCCCcEEEEcCCCCCCCCCCC-Cccccc--CCCCC-CCCCCCCCccc--------
Q 012165           50 ENREFVIVGGGNAAGYAARTFVEHGMADGRLCIVSKEAYAPYERPA-LTKGYL--FPLDK-KPARLPGFHTC--------  117 (469)
Q Consensus        50 ~~~~vvIIGgG~AGl~aA~~L~~~g~~~~~V~vie~~~~~~~~~~~-l~~~~~--~~~~~-~~~~~~~~~~~--------  117 (469)
                      ..+||+|||||+||+++|..|++.|+   +|++||+...  +.... ++...+  .+... ....+++....        
T Consensus       107 ~~~DVvIVGaGPAGLalA~~Lak~Gl---~V~LIe~~~p--~~~n~GvW~~~l~~lgl~~~i~~~w~~~~v~~~~~~~~~  181 (529)
T PLN02697        107 GTLDLVVIGCGPAGLALAAESAKLGL---NVGLIGPDLP--FTNNYGVWEDEFKDLGLEDCIEHVWRDTIVYLDDDKPIM  181 (529)
T ss_pred             CcccEEEECcCHHHHHHHHHHHhCCC---cEEEecCccc--CCCccccchhHHHhcCcHHHHHhhcCCcEEEecCCceee
Confidence            46899999999999999999999987   7999997532  21110 100000  00000 00000000000        


Q ss_pred             cCCCC--------CCCCHhHHHHCCcEEEeCCcEEEEeCCCc--E-EEeCCCeEEEeccEEeccCCCC
Q 012165          118 VGSGG--------ERQTPEWYKEKGIEMIYQDPVTSIDIEKQ--T-LITNSGKLLKYGSLIVATGCTA  174 (469)
Q Consensus       118 ~~~~~--------~~~~~~~~~~~~i~~~~~~~v~~id~~~~--~-v~~~~g~~~~yd~lVlAtG~~~  174 (469)
                      .....        ...+.+.+.+.++++ .+++|+.+..+..  . +++.+|.++.++.||.|+|...
T Consensus       182 ~~~~Yg~V~R~~L~~~Ll~~a~~~GV~~-~~~~V~~I~~~~~~~~vv~~~dG~~i~A~lVI~AdG~~S  248 (529)
T PLN02697        182 IGRAYGRVSRTLLHEELLRRCVESGVSY-LSSKVDRITEASDGLRLVACEDGRVIPCRLATVASGAAS  248 (529)
T ss_pred             ccCcccEEcHHHHHHHHHHHHHhcCCEE-EeeEEEEEEEcCCcEEEEEEcCCcEEECCEEEECCCcCh
Confidence            00000        011122234568988 4578988875433  2 4567788899999999999875

>KOG2415 consensus Electron transfer flavoprotein ubiquinone oxidoreductase [Energy production and conversion]

Probab=98.44  E-value=1.8e-06  Score=82.43  Aligned_cols=64  Identities=19%  Similarity=0.309  Sum_probs=47.2

Q ss_pred             eeHHHHHHcCcEEEcCCeEEEEEeCCCCcEEEEEcCC---------------CCEEeCCEEEEccCCccCCc--hhhhcC
Q 012165          235 RYEQLYQQNGVKFVKGASIKNLEAGSDGRVAAVKLED---------------GSTIDADTIVIGIGAKPTVS--PFERVG  297 (469)
Q Consensus       235 ~~~~~l~~~gV~~~~~~~v~~i~~~~~~~v~~v~~~~---------------g~~i~~D~vi~a~G~~p~~~--~~~~~g  297 (469)
                      ++-+..++.||+++.+...+++.-++++.|.+|.++|               |-++.+..-|+|-|-+-...  .++..+
T Consensus       188 wLg~kAEe~GvEiyPg~aaSevly~edgsVkGiaT~D~GI~k~G~pKd~FerGme~hak~TifAEGc~G~Lskqi~kkf~  267 (621)
T KOG2415|consen  188 WLGEKAEELGVEIYPGFAASEVLYDEDGSVKGIATNDVGISKDGAPKDTFERGMEFHAKVTIFAEGCHGSLSKQIIKKFD  267 (621)
T ss_pred             HHHHHHHhhCceeccccchhheeEcCCCcEeeEeeccccccCCCCccccccccceecceeEEEeccccchhHHHHHHHhC
Confidence            3445678889999999988998888888888887654               23678889999998876532  344444


Q ss_pred             C
Q 012165          298 L  298 (469)
Q Consensus       298 l  298 (469)
                      |
T Consensus       268 L  268 (621)
T KOG2415|consen  268 L  268 (621)
T ss_pred             c
Confidence            4

>PRK07608 ubiquinone biosynthesis hydroxylase family protein; Provisional

Probab=98.43  E-value=7.3e-07  Score=89.26  Aligned_cols=37  Identities=24%  Similarity=0.442  Sum_probs=33.3

Q ss_pred             CCCcEEEEcCcHHHHHHHHHHHHcCCCCCcEEEEcCCCCC
Q 012165           50 ENREFVIVGGGNAAGYAARTFVEHGMADGRLCIVSKEAYA   89 (469)
Q Consensus        50 ~~~~vvIIGgG~AGl~aA~~L~~~g~~~~~V~vie~~~~~   89 (469)
                      +++||+|||||+||+++|..|++.|+   +|+|+|+.+..
T Consensus         4 ~~~dv~IvGgG~aGl~~A~~L~~~G~---~v~v~E~~~~~   40 (388)
T PRK07608          4 MKFDVVVVGGGLVGASLALALAQSGL---RVALLAPRAPP   40 (388)
T ss_pred             ccCCEEEECcCHHHHHHHHHHHhCCC---eEEEEecCCCc
Confidence            35799999999999999999999987   79999998764

>PRK11728 hydroxyglutarate oxidase; Provisional

Probab=98.41  E-value=1.5e-06  Score=87.18  Aligned_cols=60  Identities=23%  Similarity=0.319  Sum_probs=44.1

Q ss_pred             eeHHHHHHcCcEEEcCCeEEEEEeCCCCcEEEEEcCCCCEEeCCEEEEccCCccCCchhhhcCC
Q 012165          235 RYEQLYQQNGVKFVKGASIKNLEAGSDGRVAAVKLEDGSTIDADTIVIGIGAKPTVSPFERVGL  298 (469)
Q Consensus       235 ~~~~~l~~~gV~~~~~~~v~~i~~~~~~~v~~v~~~~g~~i~~D~vi~a~G~~p~~~~~~~~gl  298 (469)
                      .+.+.+++.|++++.++.+.+++.. ++.+ .|.+.+| ++.+|.||+|+|.... .+++.+++
T Consensus       154 aL~~~~~~~Gv~i~~~~~V~~i~~~-~~~~-~V~~~~g-~i~ad~vV~A~G~~s~-~l~~~~g~  213 (393)
T PRK11728        154 AMAELIQARGGEIRLGAEVTALDEH-ANGV-VVRTTQG-EYEARTLINCAGLMSD-RLAKMAGL  213 (393)
T ss_pred             HHHHHHHhCCCEEEcCCEEEEEEec-CCeE-EEEECCC-EEEeCEEEECCCcchH-HHHHHhCC
Confidence            3456677889999999999999854 3333 5677776 7999999999998754 34444443

>PRK08849 2-octaprenyl-3-methyl-6-methoxy-1,4-benzoquinol hydroxylase; Provisional

Probab=98.41  E-value=2.1e-06  Score=85.79  Aligned_cols=122  Identities=13%  Similarity=0.244  Sum_probs=71.2

Q ss_pred             CCcEEEEcCcHHHHHHHHHHHHcCCCCCcEEEEcCCCCCCCCCC--------CCcc---ccc-----CCC-----CCCCC
Q 012165           51 NREFVIVGGGNAAGYAARTFVEHGMADGRLCIVSKEAYAPYERP--------ALTK---GYL-----FPL-----DKKPA  109 (469)
Q Consensus        51 ~~~vvIIGgG~AGl~aA~~L~~~g~~~~~V~vie~~~~~~~~~~--------~l~~---~~~-----~~~-----~~~~~  109 (469)
                      .+||+|||||++|+++|..|++.|+   +|+|+|+.+...+...        .++.   ..+     ...     .....
T Consensus         3 ~~dv~IvGgG~aGl~~A~~L~~~G~---~v~l~E~~~~~~~~~~~~~~~r~~~l~~~~~~~L~~lG~~~~~~~~~~~~~~   79 (384)
T PRK08849          3 KYDIAVVGGGMVGAATALGFAKQGR---SVAVIEGGEPKAFEPSQPMDIRVSAISQTSVDLLESLGAWSSIVAMRVCPYK   79 (384)
T ss_pred             cccEEEECcCHHHHHHHHHHHhCCC---cEEEEcCCCcccCCCCCCCCccEEEecHHHHHHHHHCCCchhhhHhhCCccc
Confidence            4799999999999999999999998   7999998752222110        1100   000     000     00000


Q ss_pred             ------CCCCCccccCCC---------CCCC-CH----hHHHH-CCcEEEeCCcEEEEeCCC--cEEEeCCCeEEEeccE
Q 012165          110 ------RLPGFHTCVGSG---------GERQ-TP----EWYKE-KGIEMIYQDPVTSIDIEK--QTLITNSGKLLKYGSL  166 (469)
Q Consensus       110 ------~~~~~~~~~~~~---------~~~~-~~----~~~~~-~~i~~~~~~~v~~id~~~--~~v~~~~g~~~~yd~l  166 (469)
                            ............         .... ..    +.+.. .+++++.++++.+++.+.  .+|++.+|.++++|.|
T Consensus        80 ~~~~~~~~~~~~~~~~~~~~~~~~g~~i~~~~l~~~L~~~~~~~~~i~i~~~~~v~~~~~~~~~~~v~~~~g~~~~~~lv  159 (384)
T PRK08849         80 RLETWEHPECRTRFHSDELNLDQLGYIVENRLIQLGLWQQFAQYPNLTLMCPEKLADLEFSAEGNRVTLESGAEIEAKWV  159 (384)
T ss_pred             eEEEEeCCCceEEecccccCCCccEEEEEcHHHHHHHHHHHHhCCCeEEECCCceeEEEEcCCeEEEEECCCCEEEeeEE
Confidence                  000000000000         0000 00    11122 478999999999986544  3678889999999999


Q ss_pred             EeccCCCCC
Q 012165          167 IVATGCTAS  175 (469)
Q Consensus       167 VlAtG~~~~  175 (469)
                      |.|+|....
T Consensus       160 IgADG~~S~  168 (384)
T PRK08849        160 IGADGANSQ  168 (384)
T ss_pred             EEecCCCch
Confidence            999997643

>PRK05714 2-octaprenyl-3-methyl-6-methoxy-1,4-benzoquinol hydroxylase; Provisional

Probab=98.41  E-value=6.6e-07  Score=90.13  Aligned_cols=121  Identities=16%  Similarity=0.287  Sum_probs=71.2

Q ss_pred             CCcEEEEcCcHHHHHHHHHHHHcCCCCCcEEEEcCCCCC--C------CC-C-CCCcc---ccc-----CCC-CC-CCCC
Q 012165           51 NREFVIVGGGNAAGYAARTFVEHGMADGRLCIVSKEAYA--P------YE-R-PALTK---GYL-----FPL-DK-KPAR  110 (469)
Q Consensus        51 ~~~vvIIGgG~AGl~aA~~L~~~g~~~~~V~vie~~~~~--~------~~-~-~~l~~---~~~-----~~~-~~-~~~~  110 (469)
                      .+||+|||||++|+++|..|++.|+   +|+|+|+.+..  +      +. + ..++.   ..+     .+. .. ....
T Consensus         2 ~~dV~IVGaG~aGl~~A~~L~~~G~---~v~viE~~~~~~~~~~~~~~~~~r~~~l~~~~~~~L~~lGl~~~l~~~~~~~   78 (405)
T PRK05714          2 RADLLIVGAGMVGSALALALQGSGL---EVLLLDGGPLSVKPFDPQAPFEPRVSALSAASQRILERLGAWDGIAARRASP   78 (405)
T ss_pred             CccEEEECccHHHHHHHHHHhcCCC---EEEEEcCCCccccccccCCCCCccchhhhHHHHHHHHHCChhhhhhHhhCcc
Confidence            4799999999999999999999988   79999987621  0      00 0 00000   000     000 00 0000


Q ss_pred             CCCCcc----------c-c---CCCC----------CCCCHhHHHHCCcEEEeCCcEEEEeCCCc--EEEeCCCeEEEec
Q 012165          111 LPGFHT----------C-V---GSGG----------ERQTPEWYKEKGIEMIYQDPVTSIDIEKQ--TLITNSGKLLKYG  164 (469)
Q Consensus       111 ~~~~~~----------~-~---~~~~----------~~~~~~~~~~~~i~~~~~~~v~~id~~~~--~v~~~~g~~~~yd  164 (469)
                      +..+..          . .   ....          ...+.+.+++.+++++.++++.+++.+..  +|++.+|+++.+|
T Consensus        79 ~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~i~~~~l~~~L~~~~~~~gv~v~~~~~v~~i~~~~~~v~v~~~~g~~~~a~  158 (405)
T PRK05714         79 YSEMQVWDGSGTGQIHFSAASVHAEVLGHIVENRVVQDALLERLHDSDIGLLANARLEQMRRSGDDWLLTLADGRQLRAP  158 (405)
T ss_pred             ceeEEEEcCCCCceEEecccccCCCccEEEEEhHHHHHHHHHHHhcCCCEEEcCCEEEEEEEcCCeEEEEECCCCEEEeC
Confidence            000000          0 0   0000          00011223456899999999999875543  5677888889999


Q ss_pred             cEEeccCCCC
Q 012165          165 SLIVATGCTA  174 (469)
Q Consensus       165 ~lVlAtG~~~  174 (469)
                      .||.|.|...
T Consensus       159 ~vVgAdG~~S  168 (405)
T PRK05714        159 LVVAADGANS  168 (405)
T ss_pred             EEEEecCCCc
Confidence            9999999764

>PRK08013 oxidoreductase; Provisional

Probab=98.40  E-value=1.5e-06  Score=87.35  Aligned_cols=122  Identities=15%  Similarity=0.172  Sum_probs=71.6

Q ss_pred             CCCcEEEEcCcHHHHHHHHHHHHcCCCCCcEEEEcCCCCCCCC-------C-----C---------CCcccccCCCCCCC
Q 012165           50 ENREFVIVGGGNAAGYAARTFVEHGMADGRLCIVSKEAYAPYE-------R-----P---------ALTKGYLFPLDKKP  108 (469)
Q Consensus        50 ~~~~vvIIGgG~AGl~aA~~L~~~g~~~~~V~vie~~~~~~~~-------~-----~---------~l~~~~~~~~~~~~  108 (469)
                      +.+||+||||||+|+++|..|++.|+   +|+|+|+.+...-.       |     |         .+...+........
T Consensus         2 ~~~dV~IvGaGpaGl~~A~~La~~G~---~v~viE~~~~~~~~~g~~~~~r~~~l~~~s~~~L~~lGl~~~~~~~~~~~~   78 (400)
T PRK08013          2 QSVDVVIAGGGMVGLAVACGLQGSGL---RVAVLEQRVPEPLAADAPPALRVSAINAASEKLLTRLGVWQDILARRASCY   78 (400)
T ss_pred             CcCCEEEECcCHHHHHHHHHHhhCCC---EEEEEeCCCCcccccCCCCCceeeecchhHHHHHHHcCCchhhhhhcCccc
Confidence            35899999999999999999999998   79999997653210       0     0         00000000000000


Q ss_pred             CC--------CCCCccc---cCCCC---CC---C----CHhHHHH-CCcEEEeCCcEEEEeCCC--cEEEeCCCeEEEec
Q 012165          109 AR--------LPGFHTC---VGSGG---ER---Q----TPEWYKE-KGIEMIYQDPVTSIDIEK--QTLITNSGKLLKYG  164 (469)
Q Consensus       109 ~~--------~~~~~~~---~~~~~---~~---~----~~~~~~~-~~i~~~~~~~v~~id~~~--~~v~~~~g~~~~yd  164 (469)
                      ..        .......   .+...   ..   .    +.+...+ .+++++.++++++++.+.  .++++.+|+++++|
T Consensus        79 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~r~~l~~~L~~~~~~~~~v~i~~~~~v~~i~~~~~~v~v~~~~g~~i~a~  158 (400)
T PRK08013         79 HGMEVWDKDSFGRIAFDDQSMGYSHLGHIIENSVIHYALWQKAQQSSDITLLAPAELQQVAWGENEAFLTLKDGSMLTAR  158 (400)
T ss_pred             cEEEEEeCCCCceEEEcccccCCCccEEEEEhHHHHHHHHHHHhcCCCcEEEcCCeeEEEEecCCeEEEEEcCCCEEEee
Confidence            00        0000000   00000   00   0    1111233 379999999999986544  35677888899999


Q ss_pred             cEEeccCCCC
Q 012165          165 SLIVATGCTA  174 (469)
Q Consensus       165 ~lVlAtG~~~  174 (469)
                      .||-|.|...
T Consensus       159 lvVgADG~~S  168 (400)
T PRK08013        159 LVVGADGANS  168 (400)
T ss_pred             EEEEeCCCCc
Confidence            9999999764

>PF04820 Trp_halogenase: Tryptophan halogenase; InterPro: IPR006905 Tryptophan halogenase catalyses the chlorination of tryptophan to form 7-chlorotryptophan

Probab=98.39  E-value=4.4e-07  Score=92.16  Aligned_cols=54  Identities=31%  Similarity=0.594  Sum_probs=42.4

Q ss_pred             eeHHHHHHcCcEEEcCCeEEEEEeCCCCcEEEEEcCCCCEEeCCEEEEccCCccC
Q 012165          235 RYEQLYQQNGVKFVKGASIKNLEAGSDGRVAAVKLEDGSTIDADTIVIGIGAKPT  289 (469)
Q Consensus       235 ~~~~~l~~~gV~~~~~~~v~~i~~~~~~~v~~v~~~~g~~i~~D~vi~a~G~~p~  289 (469)
                      .+.+..++.||+++.++ |.++..++++.+..|++++|+++.+|++|=|+|++..
T Consensus       159 ~L~~~A~~~Gv~~~~g~-V~~v~~~~~g~i~~v~~~~g~~i~ad~~IDASG~~s~  212 (454)
T PF04820_consen  159 FLRRHAEERGVEVIEGT-VVDVELDEDGRITAVRLDDGRTIEADFFIDASGRRSL  212 (454)
T ss_dssp             HHHHHHHHTT-EEEET--EEEEEE-TTSEEEEEEETTSEEEEESEEEE-SGGG-C
T ss_pred             HHHHHHhcCCCEEEeCE-EEEEEEcCCCCEEEEEECCCCEEEEeEEEECCCccch
Confidence            55666778899999884 7787777788898999999999999999999999763

This is the first step in the biosynthesis of pyrrolnitrin, an antibiotic with broad-spectrum anti-fungal activity. Tryptophan halogenase is NADH-dependent [].; PDB: 2PYX_B 2OAL_B 2E4G_A 2OAM_A 2OA1_B 2O9Z_A 3I3L_A 2AQJ_A 2ARD_A 2JKC_A ....

>PRK05868 hypothetical protein; Validated

Probab=98.38  E-value=1.5e-06  Score=86.36  Aligned_cols=121  Identities=17%  Similarity=0.157  Sum_probs=71.1

Q ss_pred             CCcEEEEcCcHHHHHHHHHHHHcCCCCCcEEEEcCCCCCCCC---------------CCCCcccc-----------cC-C
Q 012165           51 NREFVIVGGGNAAGYAARTFVEHGMADGRLCIVSKEAYAPYE---------------RPALTKGY-----------LF-P  103 (469)
Q Consensus        51 ~~~vvIIGgG~AGl~aA~~L~~~g~~~~~V~vie~~~~~~~~---------------~~~l~~~~-----------~~-~  103 (469)
                      |+||+|||||++|+++|..|++.|+   +|+|+|+.+...-.               +..+...+           +. .
T Consensus         1 ~~~V~IvGgG~aGl~~A~~L~~~G~---~v~viE~~~~~~~~g~~i~~~~~a~~~L~~lGl~~~~~~~~~~~~~~~~~~~   77 (372)
T PRK05868          1 MKTVVVSGASVAGTAAAYWLGRHGY---SVTMVERHPGLRPGGQAIDVRGPALDVLERMGLLAAAQEHKTRIRGASFVDR   77 (372)
T ss_pred             CCeEEEECCCHHHHHHHHHHHhCCC---CEEEEcCCCCCCCCceeeeeCchHHHHHHhcCCHHHHHhhccCccceEEEeC
Confidence            4689999999999999999999998   79999988653210               00010000           00 0


Q ss_pred             CCCCCCCCCC---CccccCC-CCCC---CCHhHHH---HCCcEEEeCCcEEEEeCCCc--EEEeCCCeEEEeccEEeccC
Q 012165          104 LDKKPARLPG---FHTCVGS-GGER---QTPEWYK---EKGIEMIYQDPVTSIDIEKQ--TLITNSGKLLKYGSLIVATG  171 (469)
Q Consensus       104 ~~~~~~~~~~---~~~~~~~-~~~~---~~~~~~~---~~~i~~~~~~~v~~id~~~~--~v~~~~g~~~~yd~lVlAtG  171 (469)
                      ..........   ....... ....   .+.+.+.   ..+++++++++|++++.+..  +|++.+|+++++|.||-|-|
T Consensus        78 ~g~~~~~~~~~~~~~~~~~~~~~~i~R~~L~~~l~~~~~~~v~i~~~~~v~~i~~~~~~v~v~~~dg~~~~adlvIgADG  157 (372)
T PRK05868         78 DGNELFRDTESTPTGGPVNSPDIELLRDDLVELLYGATQPSVEYLFDDSISTLQDDGDSVRVTFERAAAREFDLVIGADG  157 (372)
T ss_pred             CCCEEeecccccccCCCCCCceEEEEHHHHHHHHHHhccCCcEEEeCCEEEEEEecCCeEEEEECCCCeEEeCEEEECCC
Confidence            0000000000   0000000 0000   0111121   35789999999999875443  57778998999999999999


Q ss_pred             CCC
Q 012165          172 CTA  174 (469)
Q Consensus       172 ~~~  174 (469)
                      .+.
T Consensus       158 ~~S  160 (372)
T PRK05868        158 LHS  160 (372)
T ss_pred             CCc
Confidence            664

>PF05834 Lycopene_cycl: Lycopene cyclase protein; InterPro: IPR008671 This family consists of lycopene beta and epsilon cyclase proteins

Probab=98.38  E-value=1.3e-06  Score=86.77  Aligned_cols=119  Identities=16%  Similarity=0.170  Sum_probs=69.2

Q ss_pred             cEEEEcCcHHHHHHHHHHHHcCCCCCcEEEEcCCCCCCCCCCCCcccccCCCCC-----CCCCCCCCc-------cccCC
Q 012165           53 EFVIVGGGNAAGYAARTFVEHGMADGRLCIVSKEAYAPYERPALTKGYLFPLDK-----KPARLPGFH-------TCVGS  120 (469)
Q Consensus        53 ~vvIIGgG~AGl~aA~~L~~~g~~~~~V~vie~~~~~~~~~~~l~~~~~~~~~~-----~~~~~~~~~-------~~~~~  120 (469)
                      ||+|||||+||+++|..|++... +.+|+|||+++..++....... ++.....     ....++...       .....
T Consensus         1 DviIvGaGpAGlslA~~l~~~~~-g~~Vllid~~~~~~~~~~~tW~-~~~~~~~~~~~~v~~~w~~~~v~~~~~~~~~~~   78 (374)
T PF05834_consen    1 DVIIVGAGPAGLSLARRLADARP-GLSVLLIDPKPKPPWPNDRTWC-FWEKDLGPLDSLVSHRWSGWRVYFPDGSRILID   78 (374)
T ss_pred             CEEEECCcHHHHHHHHHHHhcCC-CCEEEEEcCCccccccCCcccc-cccccccchHHHHheecCceEEEeCCCceEEcc
Confidence            79999999999999999955443 5589999998776332211110 1110000     001111110       00000


Q ss_pred             --CCCCC---CHh----HHHHCCcEEEeCCcEEEEeCCCc--EEEeCCCeEEEeccEEeccCCCC
Q 012165          121 --GGERQ---TPE----WYKEKGIEMIYQDPVTSIDIEKQ--TLITNSGKLLKYGSLIVATGCTA  174 (469)
Q Consensus       121 --~~~~~---~~~----~~~~~~i~~~~~~~v~~id~~~~--~v~~~~g~~~~yd~lVlAtG~~~  174 (469)
                        +....   +.+    .+...++ .+.+.+|.+|+....  .|++.+|.+++++.||-|+|..+
T Consensus        79 ~~Y~~i~~~~f~~~l~~~~~~~~~-~~~~~~V~~i~~~~~~~~v~~~~g~~i~a~~VvDa~g~~~  142 (374)
T PF05834_consen   79 YPYCMIDRADFYEFLLERAAAGGV-IRLNARVTSIEETGDGVLVVLADGRTIRARVVVDARGPSS  142 (374)
T ss_pred             cceEEEEHHHHHHHHHHHhhhCCe-EEEccEEEEEEecCceEEEEECCCCEEEeeEEEECCCccc
Confidence              00001   111    1222344 556689999988766  67889999999999999999543

Carotenoids with cyclic end groups are essential components of the photosynthetic membranes in all plants, algae, and cyanobacteria. These lipid-soluble compounds protect against photo-oxidation, harvest light for photosynthesis, and dissipate excess light energy absorbed by the antenna pigments. The cyclisation of lycopene (psi, psi-carotene) is a key branch point in the pathway of carotenoid biosynthesis. Two types of cyclic end groups are found in higher plant carotenoids: the beta and epsilon rings. Carotenoids with two beta rings are ubiquitous, and those with one beta and one epsilon ring are common; however, carotenoids with two epsilon rings are rare [].; GO: 0016705 oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen, 0016117 carotenoid biosynthetic process

>PRK08163 salicylate hydroxylase; Provisional

Probab=98.38  E-value=1.1e-06  Score=88.17  Aligned_cols=123  Identities=20%  Similarity=0.208  Sum_probs=71.3

Q ss_pred             CCCcEEEEcCcHHHHHHHHHHHHcCCCCCcEEEEcCCCCCCCCCC--CCcc---ccc-----CC----------------
Q 012165           50 ENREFVIVGGGNAAGYAARTFVEHGMADGRLCIVSKEAYAPYERP--ALTK---GYL-----FP----------------  103 (469)
Q Consensus        50 ~~~~vvIIGgG~AGl~aA~~L~~~g~~~~~V~vie~~~~~~~~~~--~l~~---~~~-----~~----------------  103 (469)
                      ++.||+|||||++|+++|..|++.|+   +|+|+|+.+...-...  .++.   ..+     ..                
T Consensus         3 ~~~~V~IvGaGiaGl~~A~~L~~~g~---~v~v~Er~~~~~~~g~gi~l~~~~~~~l~~lg~~~~~~~~~~~~~~~~~~~   79 (396)
T PRK08163          3 KVTPVLIVGGGIGGLAAALALARQGI---KVKLLEQAAEIGEIGAGIQLGPNAFSALDALGVGEAARQRAVFTDHLTMMD   79 (396)
T ss_pred             CCCeEEEECCcHHHHHHHHHHHhCCC---cEEEEeeCcccccccceeeeCchHHHHHHHcCChHHHHhhccCCcceEEEe
Confidence            45799999999999999999999998   7999999865321000  0000   000     00                


Q ss_pred             --CCCCCCCCC--C-CccccCCCC--------CCCCHhHHHHC-CcEEEeCCcEEEEeCCCc--EEEeCCCeEEEeccEE
Q 012165          104 --LDKKPARLP--G-FHTCVGSGG--------ERQTPEWYKEK-GIEMIYQDPVTSIDIEKQ--TLITNSGKLLKYGSLI  167 (469)
Q Consensus       104 --~~~~~~~~~--~-~~~~~~~~~--------~~~~~~~~~~~-~i~~~~~~~v~~id~~~~--~v~~~~g~~~~yd~lV  167 (469)
                        .......++  . +....+...        ...+.+.+.+. +++++.++++++++.++.  .+++.+|+++.+|.||
T Consensus        80 ~~~~~~~~~~~~~~~~~~~~~~~~~~i~r~~l~~~L~~~~~~~~~v~~~~~~~v~~i~~~~~~v~v~~~~g~~~~ad~vV  159 (396)
T PRK08163         80 AVDAEEVVRIPTGQAFRARFGNPYAVIHRADIHLSLLEAVLDHPLVEFRTSTHVVGIEQDGDGVTVFDQQGNRWTGDALI  159 (396)
T ss_pred             CCCCCEEEEeccchhHHHhcCCcEEEEEHHHHHHHHHHHHHhcCCcEEEeCCEEEEEecCCCceEEEEcCCCEEecCEEE
Confidence              000000000  0 000000000        00011112233 488999999999976544  5667788889999999


Q ss_pred             eccCCCCC
Q 012165          168 VATGCTAS  175 (469)
Q Consensus       168 lAtG~~~~  175 (469)
                      .|.|....
T Consensus       160 ~AdG~~S~  167 (396)
T PRK08163        160 GCDGVKSV  167 (396)
T ss_pred             ECCCcChH
Confidence            99997643

>PRK06912 acoL dihydrolipoamide dehydrogenase; Validated

Probab=98.37  E-value=1.1e-06  Score=89.75  Aligned_cols=97  Identities=16%  Similarity=0.245  Sum_probs=71.9

Q ss_pred             CCcEEEEcCcHHHHHHHHHHHHcCCCCCcEEEEcCCCCCCCCCCCCcccccCCCCCCCCCCCCCccccCCCCCCCCHhHH
Q 012165           51 NREFVIVGGGNAAGYAARTFVEHGMADGRLCIVSKEAYAPYERPALTKGYLFPLDKKPARLPGFHTCVGSGGERQTPEWY  130 (469)
Q Consensus        51 ~~~vvIIGgG~AGl~aA~~L~~~g~~~~~V~vie~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  130 (469)
                      .++++|||||+.|+.+|..|++.|.   +|+++++.+...           .....   ++           .....+.+
T Consensus       170 ~~~vvIIGgG~iG~E~A~~l~~~g~---~Vtli~~~~~ll-----------~~~d~---e~-----------~~~l~~~L  221 (458)
T PRK06912        170 PSSLLIVGGGVIGCEFASIYSRLGT---KVTIVEMAPQLL-----------PGEDE---DI-----------AHILREKL  221 (458)
T ss_pred             CCcEEEECCCHHHHHHHHHHHHcCC---eEEEEecCCCcC-----------ccccH---HH-----------HHHHHHHH
Confidence            4689999999999999999999876   799999775421           00000   00           11234667


Q ss_pred             HHCCcEEEeCCcEEEEeCCCcEEEeC-CC--eEEEeccEEeccCCCCC
Q 012165          131 KEKGIEMIYQDPVTSIDIEKQTLITN-SG--KLLKYGSLIVATGCTAS  175 (469)
Q Consensus       131 ~~~~i~~~~~~~v~~id~~~~~v~~~-~g--~~~~yd~lVlAtG~~~~  175 (469)
                      ++.|++++.++++.+++.++..+.+. ++  .+++||.|++|+|.+|.
T Consensus       222 ~~~GI~i~~~~~V~~i~~~~~~v~~~~~g~~~~i~~D~vivA~G~~p~  269 (458)
T PRK06912        222 ENDGVKIFTGAALKGLNSYKKQALFEYEGSIQEVNAEFVLVSVGRKPR  269 (458)
T ss_pred             HHCCCEEEECCEEEEEEEcCCEEEEEECCceEEEEeCEEEEecCCccC
Confidence            88899999999999998766554442 33  36999999999998876

>PRK06126 hypothetical protein; Provisional

Probab=98.36  E-value=1.8e-06  Score=90.43  Aligned_cols=39  Identities=21%  Similarity=0.244  Sum_probs=34.6

Q ss_pred             CCCCCCcEEEEcCcHHHHHHHHHHHHcCCCCCcEEEEcCCCC
Q 012165           47 FANENREFVIVGGGNAAGYAARTFVEHGMADGRLCIVSKEAY   88 (469)
Q Consensus        47 ~~~~~~~vvIIGgG~AGl~aA~~L~~~g~~~~~V~vie~~~~   88 (469)
                      |.++.++|+|||||++|+++|..|+++|+   +++|+|+.+.
T Consensus         3 ~~~~~~~VlIVGaGpaGL~~Al~La~~G~---~v~viEr~~~   41 (545)
T PRK06126          3 ENTSETPVLIVGGGPVGLALALDLGRRGV---DSILVERKDG   41 (545)
T ss_pred             CCCccCCEEEECCCHHHHHHHHHHHHCCC---cEEEEeCCCC
Confidence            34556899999999999999999999998   7999998864

>PRK04965 NADH:flavorubredoxin oxidoreductase; Provisional

Probab=98.36  E-value=1.5e-06  Score=86.53  Aligned_cols=99  Identities=16%  Similarity=0.350  Sum_probs=75.2

Q ss_pred             CCCcEEEEcCcHHHHHHHHHHHHcCCCCCcEEEEcCCCCCCCCCCCCcccccCCCCCCCCCCCCCccccCCCCCCCCHhH
Q 012165           50 ENREFVIVGGGNAAGYAARTFVEHGMADGRLCIVSKEAYAPYERPALTKGYLFPLDKKPARLPGFHTCVGSGGERQTPEW  129 (469)
Q Consensus        50 ~~~~vvIIGgG~AGl~aA~~L~~~g~~~~~V~vie~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  129 (469)
                      ..++++|||||+.|+.+|..|++.+.   +|+++++.+...   +.    .+ +     ..+           .....+.
T Consensus       140 ~~~~vvViGgG~~g~e~A~~L~~~g~---~Vtlv~~~~~~l---~~----~~-~-----~~~-----------~~~l~~~  192 (377)
T PRK04965        140 DAQRVLVVGGGLIGTELAMDLCRAGK---AVTLVDNAASLL---AS----LM-P-----PEV-----------SSRLQHR  192 (377)
T ss_pred             cCCeEEEECCCHHHHHHHHHHHhcCC---eEEEEecCCccc---ch----hC-C-----HHH-----------HHHHHHH
Confidence            34689999999999999999999876   799999876431   00    00 0     000           1123566


Q ss_pred             HHHCCcEEEeCCcEEEEeCCCc--EEEeCCCeEEEeccEEeccCCCCC
Q 012165          130 YKEKGIEMIYQDPVTSIDIEKQ--TLITNSGKLLKYGSLIVATGCTAS  175 (469)
Q Consensus       130 ~~~~~i~~~~~~~v~~id~~~~--~v~~~~g~~~~yd~lVlAtG~~~~  175 (469)
                      +++.|++++.++++.+++.+..  .+.+.+|+++++|.+|+|+|..|.
T Consensus       193 l~~~gV~i~~~~~v~~i~~~~~~~~v~~~~g~~i~~D~vI~a~G~~p~  240 (377)
T PRK04965        193 LTEMGVHLLLKSQLQGLEKTDSGIRATLDSGRSIEVDAVIAAAGLRPN  240 (377)
T ss_pred             HHhCCCEEEECCeEEEEEccCCEEEEEEcCCcEEECCEEEECcCCCcc
Confidence            7889999999999999987543  567788989999999999998875

>PRK07512 L-aspartate oxidase; Provisional

Probab=98.36  E-value=1.1e-05  Score=83.45  Aligned_cols=55  Identities=31%  Similarity=0.441  Sum_probs=36.9

Q ss_pred             CCCEEeCCCCCCCCCceEEeccccccCCccCCcccccchHHHHHHHHHHHHHHHhc
Q 012165          302 VGGIQVDGQFRTRMPGIFAIGDVAAFPLKMYDRTARVEHVDHARQSAQHCIKALLS  357 (469)
Q Consensus       302 ~g~i~Vd~~~~t~~~~Vfa~GD~a~~~~~~~~~~~~~~~~~~A~~~a~~~a~~i~~  357 (469)
                      -|||.||.+.+|++|++||+|+|+.......++.. -.+...+...|+.+++++..
T Consensus       341 ~GGi~vd~~~~t~I~GLyAaGE~a~~G~hGanrl~-gnsl~~~~v~G~~ag~~aa~  395 (513)
T PRK07512        341 MGGIAVDADGRSSLPGLWAAGEVASTGLHGANRLA-SNSLLEAVVFAARAAEDIAG  395 (513)
T ss_pred             cCCEEECCCCccccCCEEecccccccCCCcccchH-HHHHHHHHHHHHHHHHHHHH
Confidence            48999999999999999999999742111111111 22344566677777777653

>PRK06183 mhpA 3-(3-hydroxyphenyl)propionate hydroxylase; Validated

Probab=98.35  E-value=2.4e-06  Score=89.20  Aligned_cols=37  Identities=22%  Similarity=0.329  Sum_probs=33.8

Q ss_pred             CCCCcEEEEcCcHHHHHHHHHHHHcCCCCCcEEEEcCCCC
Q 012165           49 NENREFVIVGGGNAAGYAARTFVEHGMADGRLCIVSKEAY   88 (469)
Q Consensus        49 ~~~~~vvIIGgG~AGl~aA~~L~~~g~~~~~V~vie~~~~   88 (469)
                      +..+||+|||||++|+++|..|++.|+   +|+|+|+.+.
T Consensus         8 ~~~~dV~IVGaGp~Gl~lA~~L~~~G~---~v~v~Er~~~   44 (538)
T PRK06183          8 AHDTDVVIVGAGPVGLTLANLLGQYGV---RVLVLERWPT   44 (538)
T ss_pred             cCCCCEEEECCCHHHHHHHHHHHHCCC---cEEEEecCCC
Confidence            556899999999999999999999988   7999999864

>TIGR01350 lipoamide_DH dihydrolipoamide dehydrogenase

Probab=98.35  E-value=1.5e-06  Score=89.18  Aligned_cols=97  Identities=20%  Similarity=0.330  Sum_probs=72.7

Q ss_pred             CCcEEEEcCcHHHHHHHHHHHHcCCCCCcEEEEcCCCCCCCCCCCCcccccCCCCCCCCCCCCCccccCCCCCCCCHhHH
Q 012165           51 NREFVIVGGGNAAGYAARTFVEHGMADGRLCIVSKEAYAPYERPALTKGYLFPLDKKPARLPGFHTCVGSGGERQTPEWY  130 (469)
Q Consensus        51 ~~~vvIIGgG~AGl~aA~~L~~~g~~~~~V~vie~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  130 (469)
                      .++++|||||++|+.+|..|++.|.   +|+++++.+...   |.+..           .+           .....+.+
T Consensus       170 ~~~vvViGgG~~g~e~A~~l~~~g~---~Vtli~~~~~~l---~~~~~-----------~~-----------~~~~~~~l  221 (461)
T TIGR01350       170 PESLVIIGGGVIGIEFASIFASLGS---KVTVIEMLDRIL---PGEDA-----------EV-----------SKVVAKAL  221 (461)
T ss_pred             CCeEEEECCCHHHHHHHHHHHHcCC---cEEEEEcCCCCC---CCCCH-----------HH-----------HHHHHHHH
Confidence            4789999999999999999999986   799999876421   10000           00           11234567


Q ss_pred             HHCCcEEEeCCcEEEEeCCCcE--EEeCCC--eEEEeccEEeccCCCCC
Q 012165          131 KEKGIEMIYQDPVTSIDIEKQT--LITNSG--KLLKYGSLIVATGCTAS  175 (469)
Q Consensus       131 ~~~~i~~~~~~~v~~id~~~~~--v~~~~g--~~~~yd~lVlAtG~~~~  175 (469)
                      ++.+++++.++++.+++.++..  +.+.+|  +++++|.||+|+|..|.
T Consensus       222 ~~~gi~i~~~~~v~~i~~~~~~v~v~~~~g~~~~i~~D~vi~a~G~~p~  270 (461)
T TIGR01350       222 KKKGVKILTNTKVTAVEKNDDQVVYENKGGETETLTGEKVLVAVGRKPN  270 (461)
T ss_pred             HHcCCEEEeCCEEEEEEEeCCEEEEEEeCCcEEEEEeCEEEEecCCccc
Confidence            8889999999999999865543  444556  47999999999999876

The motif GGXCXXXGCXP near the N-terminus contains a redox-active disulfide.

>PRK09754 phenylpropionate dioxygenase ferredoxin reductase subunit; Provisional

Probab=98.35  E-value=1.3e-06  Score=87.69  Aligned_cols=98  Identities=18%  Similarity=0.288  Sum_probs=73.8

Q ss_pred             CCcEEEEcCcHHHHHHHHHHHHcCCCCCcEEEEcCCCCCCCCCCCCcccccCCCCCCCCCCCCCccccCCCCCCCCHhHH
Q 012165           51 NREFVIVGGGNAAGYAARTFVEHGMADGRLCIVSKEAYAPYERPALTKGYLFPLDKKPARLPGFHTCVGSGGERQTPEWY  130 (469)
Q Consensus        51 ~~~vvIIGgG~AGl~aA~~L~~~g~~~~~V~vie~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  130 (469)
                      .++++|||||+.|+.+|..|++.|.   +|+|+++.+.+.      .. .. +  .   ..           .....+.+
T Consensus       144 ~~~vvViGgG~ig~E~A~~l~~~g~---~Vtlv~~~~~~l------~~-~~-~--~---~~-----------~~~l~~~l  196 (396)
T PRK09754        144 ERSVVIVGAGTIGLELAASATQRRC---KVTVIELAATVM------GR-NA-P--P---PV-----------QRYLLQRH  196 (396)
T ss_pred             CCeEEEECCCHHHHHHHHHHHHcCC---eEEEEecCCcch------hh-hc-C--H---HH-----------HHHHHHHH
Confidence            4689999999999999999999876   799999876421      00 00 0  0   00           01234566


Q ss_pred             HHCCcEEEeCCcEEEEeCCC-cEEEeCCCeEEEeccEEeccCCCCC
Q 012165          131 KEKGIEMIYQDPVTSIDIEK-QTLITNSGKLLKYGSLIVATGCTAS  175 (469)
Q Consensus       131 ~~~~i~~~~~~~v~~id~~~-~~v~~~~g~~~~yd~lVlAtG~~~~  175 (469)
                      ++.|++++.++++.+++.+. ..+.+.+|+++++|.||+|+|..|+
T Consensus       197 ~~~GV~i~~~~~V~~i~~~~~~~v~l~~g~~i~aD~Vv~a~G~~pn  242 (396)
T PRK09754        197 QQAGVRILLNNAIEHVVDGEKVELTLQSGETLQADVVIYGIGISAN  242 (396)
T ss_pred             HHCCCEEEeCCeeEEEEcCCEEEEEECCCCEEECCEEEECCCCChh
Confidence            78899999999999987633 3567788989999999999999875

>COG2081 Predicted flavoproteins [General function prediction only]

Probab=98.35  E-value=3.8e-06  Score=80.71  Aligned_cols=91  Identities=18%  Similarity=0.291  Sum_probs=75.4

Q ss_pred             CeEEEEcCChHHHHHHHHHHhCCCeEe-----------------------------------------------------
Q 012165          208 KKVVVVGGGYIGMEVAAAAVGWKLDTT-----------------------------------------------------  234 (469)
Q Consensus       208 ~~vvVvG~G~~g~e~A~~l~~~g~~v~-----------------------------------------------------  234 (469)
                      ..|+|||+|+.|+-+|..+++.|.+|.                                                     
T Consensus         4 ~dviIIGgGpAGlMaA~~aa~~G~~V~lid~~~k~GrKil~sGgGrCN~Tn~~~~~~~ls~~p~~~~fl~sal~~ft~~d   83 (408)
T COG2081           4 FDVIIIGGGPAGLMAAISAAKAGRRVLLIDKGPKLGRKILMSGGGRCNFTNSEAPDEFLSRNPGNGHFLKSALARFTPED   83 (408)
T ss_pred             ceEEEECCCHHHHHHHHHHhhcCCEEEEEecCccccceeEecCCCCccccccccHHHHHHhCCCcchHHHHHHHhCCHHH
Confidence            479999999999999999999999886                                                     


Q ss_pred             --------------------------------eeHHHHHHcCcEEEcCCeEEEEEeCCCCcEEEEEcCCCCEEeCCEEEE
Q 012165          235 --------------------------------RYEQLYQQNGVKFVKGASIKNLEAGSDGRVAAVKLEDGSTIDADTIVI  282 (469)
Q Consensus       235 --------------------------------~~~~~l~~~gV~~~~~~~v~~i~~~~~~~v~~v~~~~g~~i~~D~vi~  282 (469)
                                                      .+...+++.||++++++.|.+++.++  ....+.+.+|+++.||.+|+
T Consensus        84 ~i~~~e~~Gi~~~e~~~Gr~Fp~sdkA~~Iv~~ll~~~~~~gV~i~~~~~v~~v~~~~--~~f~l~t~~g~~i~~d~lil  161 (408)
T COG2081          84 FIDWVEGLGIALKEEDLGRMFPDSDKASPIVDALLKELEALGVTIRTRSRVSSVEKDD--SGFRLDTSSGETVKCDSLIL  161 (408)
T ss_pred             HHHHHHhcCCeeEEccCceecCCccchHHHHHHHHHHHHHcCcEEEecceEEeEEecC--ceEEEEcCCCCEEEccEEEE
Confidence                                            56778899999999999999999653  33468899998999999999


Q ss_pred             ccCC--ccCC-------chhhhcCCcc
Q 012165          283 GIGA--KPTV-------SPFERVGLNS  300 (469)
Q Consensus       283 a~G~--~p~~-------~~~~~~gl~~  300 (469)
                      |+|-  .|.+       .++++.|+..
T Consensus       162 AtGG~S~P~lGstg~gy~iA~~~G~~I  188 (408)
T COG2081         162 ATGGKSWPKLGSTGFGYPIARQFGHTI  188 (408)
T ss_pred             ecCCcCCCCCCCCchhhHHHHHcCCcc
Confidence            9994  4532       2466666653

>PRK07364 2-octaprenyl-6-methoxyphenyl hydroxylase; Validated

Probab=98.34  E-value=1.5e-06  Score=87.72  Aligned_cols=37  Identities=22%  Similarity=0.401  Sum_probs=33.6

Q ss_pred             CCCcEEEEcCcHHHHHHHHHHHHcCCCCCcEEEEcCCCCC
Q 012165           50 ENREFVIVGGGNAAGYAARTFVEHGMADGRLCIVSKEAYA   89 (469)
Q Consensus        50 ~~~~vvIIGgG~AGl~aA~~L~~~g~~~~~V~vie~~~~~   89 (469)
                      ..+||+|||||+||+++|..|++.|+   +|+|+|+.+..
T Consensus        17 ~~~dV~IvGaG~aGl~~A~~L~~~G~---~v~v~E~~~~~   53 (415)
T PRK07364         17 LTYDVAIVGGGIVGLTLAAALKDSGL---RIALIEAQPAE   53 (415)
T ss_pred             cccCEEEECcCHHHHHHHHHHhcCCC---EEEEEecCCcc
Confidence            45899999999999999999999998   79999998754

>PRK06416 dihydrolipoamide dehydrogenase; Reviewed

Probab=98.34  E-value=1.4e-06  Score=89.41  Aligned_cols=98  Identities=20%  Similarity=0.341  Sum_probs=73.3

Q ss_pred             CCcEEEEcCcHHHHHHHHHHHHcCCCCCcEEEEcCCCCCCCCCCCCcccccCCCCCCCCCCCCCccccCCCCCCCCHhHH
Q 012165           51 NREFVIVGGGNAAGYAARTFVEHGMADGRLCIVSKEAYAPYERPALTKGYLFPLDKKPARLPGFHTCVGSGGERQTPEWY  130 (469)
Q Consensus        51 ~~~vvIIGgG~AGl~aA~~L~~~g~~~~~V~vie~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  130 (469)
                      .++++|||||+.|+.+|..|++.|.   +|+++++.+...   |.+        ..   .+           .....+.+
T Consensus       172 ~~~vvVvGgG~~g~E~A~~l~~~g~---~Vtli~~~~~~l---~~~--------~~---~~-----------~~~l~~~l  223 (462)
T PRK06416        172 PKSLVVIGGGYIGVEFASAYASLGA---EVTIVEALPRIL---PGE--------DK---EI-----------SKLAERAL  223 (462)
T ss_pred             CCeEEEECCCHHHHHHHHHHHHcCC---eEEEEEcCCCcC---CcC--------CH---HH-----------HHHHHHHH
Confidence            4789999999999999999999886   799999876431   100        00   00           12245667


Q ss_pred             HHCCcEEEeCCcEEEEeCCCc--EEEeCCC---eEEEeccEEeccCCCCCc
Q 012165          131 KEKGIEMIYQDPVTSIDIEKQ--TLITNSG---KLLKYGSLIVATGCTASR  176 (469)
Q Consensus       131 ~~~~i~~~~~~~v~~id~~~~--~v~~~~g---~~~~yd~lVlAtG~~~~~  176 (469)
                      ++.+++++.+++|.+++.+..  .+.+.++   +++++|.||+|+|.+|..
T Consensus       224 ~~~gV~i~~~~~V~~i~~~~~~v~v~~~~gg~~~~i~~D~vi~a~G~~p~~  274 (462)
T PRK06416        224 KKRGIKIKTGAKAKKVEQTDDGVTVTLEDGGKEETLEADYVLVAVGRRPNT  274 (462)
T ss_pred             HHcCCEEEeCCEEEEEEEeCCEEEEEEEeCCeeEEEEeCEEEEeeCCccCC
Confidence            889999999999999987654  3444555   679999999999998763

>PRK05192 tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA; Validated

Probab=98.33  E-value=9.4e-07  Score=91.01  Aligned_cols=36  Identities=25%  Similarity=0.424  Sum_probs=32.6

Q ss_pred             CCCCcEEEEcCcHHHHHHHHHHHHcCCCCCcEEEEcCCC
Q 012165           49 NENREFVIVGGGNAAGYAARTFVEHGMADGRLCIVSKEA   87 (469)
Q Consensus        49 ~~~~~vvIIGgG~AGl~aA~~L~~~g~~~~~V~vie~~~   87 (469)
                      +.++||+|||||+||+.||..+++.|.   +|.|||+..
T Consensus         2 ~~~yDVIVVGGGpAG~eAA~~aAR~G~---kV~LiE~~~   37 (618)
T PRK05192          2 PEEYDVIVVGGGHAGCEAALAAARMGA---KTLLLTHNL   37 (618)
T ss_pred             CccceEEEECchHHHHHHHHHHHHcCC---cEEEEeccc
Confidence            346899999999999999999999987   799999874

>PRK05976 dihydrolipoamide dehydrogenase; Validated

Probab=98.32  E-value=1.9e-06  Score=88.53  Aligned_cols=97  Identities=22%  Similarity=0.384  Sum_probs=71.0

Q ss_pred             CCcEEEEcCcHHHHHHHHHHHHcCCCCCcEEEEcCCCCCCCCCCCCcccccCCCCCCCCCCCCCccccCCCCCCCCHhHH
Q 012165           51 NREFVIVGGGNAAGYAARTFVEHGMADGRLCIVSKEAYAPYERPALTKGYLFPLDKKPARLPGFHTCVGSGGERQTPEWY  130 (469)
Q Consensus        51 ~~~vvIIGgG~AGl~aA~~L~~~g~~~~~V~vie~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  130 (469)
                      .++++|||||++|+.+|..|++.|.   +|+|+++.+...   |..        .   ..+           .....+.+
T Consensus       180 ~~~vvIIGgG~~G~E~A~~l~~~g~---~Vtli~~~~~il---~~~--------~---~~~-----------~~~l~~~l  231 (472)
T PRK05976        180 PKSLVIVGGGVIGLEWASMLADFGV---EVTVVEAADRIL---PTE--------D---AEL-----------SKEVARLL  231 (472)
T ss_pred             CCEEEEECCCHHHHHHHHHHHHcCC---eEEEEEecCccC---CcC--------C---HHH-----------HHHHHHHH
Confidence            4799999999999999999999876   799998776420   100        0   000           11234567


Q ss_pred             HHCCcEEEeCCcEEEEeC--CCcE--EEeCCC--eEEEeccEEeccCCCCC
Q 012165          131 KEKGIEMIYQDPVTSIDI--EKQT--LITNSG--KLLKYGSLIVATGCTAS  175 (469)
Q Consensus       131 ~~~~i~~~~~~~v~~id~--~~~~--v~~~~g--~~~~yd~lVlAtG~~~~  175 (469)
                      ++.|++++.++++..++.  ++..  +.+.+|  ++++||.||+|+|.+|.
T Consensus       232 ~~~gI~i~~~~~v~~i~~~~~~~~~~~~~~~g~~~~i~~D~vi~a~G~~p~  282 (472)
T PRK05976        232 KKLGVRVVTGAKVLGLTLKKDGGVLIVAEHNGEEKTLEADKVLVSVGRRPN  282 (472)
T ss_pred             HhcCCEEEeCcEEEEEEEecCCCEEEEEEeCCceEEEEeCEEEEeeCCccC
Confidence            889999999999999974  3332  234455  36999999999999886

>PRK14694 putative mercuric reductase; Provisional

Probab=98.32  E-value=2.3e-06  Score=87.72  Aligned_cols=96  Identities=24%  Similarity=0.390  Sum_probs=71.0

Q ss_pred             CCcEEEEcCcHHHHHHHHHHHHcCCCCCcEEEEcCCCCCCCCCCCCcccccCCCCCCCCCCCCCccccCCCCCCCCHhHH
Q 012165           51 NREFVIVGGGNAAGYAARTFVEHGMADGRLCIVSKEAYAPYERPALTKGYLFPLDKKPARLPGFHTCVGSGGERQTPEWY  130 (469)
Q Consensus        51 ~~~vvIIGgG~AGl~aA~~L~~~g~~~~~V~vie~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  130 (469)
                      .++++|||+|+.|+.+|..|++.|.   +|+++++...++.    .        ..   .+           .....+.+
T Consensus       178 ~~~vvViG~G~~G~E~A~~l~~~g~---~Vtlv~~~~~l~~----~--------~~---~~-----------~~~l~~~l  228 (468)
T PRK14694        178 PERLLVIGASVVALELAQAFARLGS---RVTVLARSRVLSQ----E--------DP---AV-----------GEAIEAAF  228 (468)
T ss_pred             CCeEEEECCCHHHHHHHHHHHHcCC---eEEEEECCCCCCC----C--------CH---HH-----------HHHHHHHH
Confidence            4799999999999999999999886   7999986432210    0        00   00           12345667


Q ss_pred             HHCCcEEEeCCcEEEEeCCCcE--EEeCCCeEEEeccEEeccCCCCCc
Q 012165          131 KEKGIEMIYQDPVTSIDIEKQT--LITNSGKLLKYGSLIVATGCTASR  176 (469)
Q Consensus       131 ~~~~i~~~~~~~v~~id~~~~~--v~~~~g~~~~yd~lVlAtG~~~~~  176 (469)
                      ++.|++++.++.+..++.++..  +.+.++ ++++|.||+|+|.+|+.
T Consensus       229 ~~~GI~v~~~~~v~~i~~~~~~~~v~~~~~-~i~~D~vi~a~G~~pn~  275 (468)
T PRK14694        229 RREGIEVLKQTQASEVDYNGREFILETNAG-TLRAEQLLVATGRTPNT  275 (468)
T ss_pred             HhCCCEEEeCCEEEEEEEcCCEEEEEECCC-EEEeCEEEEccCCCCCc
Confidence            8899999999999999876553  334444 69999999999998863

>COG1232 HemY Protoporphyrinogen oxidase [Coenzyme metabolism]

Probab=98.31  E-value=2.3e-06  Score=85.18  Aligned_cols=37  Identities=24%  Similarity=0.324  Sum_probs=33.8

Q ss_pred             cEEEEcCcHHHHHHHHHHHHcCCCCCcEEEEcCCCCCC
Q 012165           53 EFVIVGGGNAAGYAARTFVEHGMADGRLCIVSKEAYAP   90 (469)
Q Consensus        53 ~vvIIGgG~AGl~aA~~L~~~g~~~~~V~vie~~~~~~   90 (469)
                      +|+|||||+|||+||.+|++++. +.+|+|+|+++..+
T Consensus         2 ~i~IiG~GiaGLsaAy~L~k~~p-~~~i~lfE~~~r~G   38 (444)
T COG1232           2 KIAIIGGGIAGLSAAYRLQKAGP-DVEVTLFEADDRVG   38 (444)
T ss_pred             eEEEECCcHHHHHHHHHHHHhCC-CCcEEEEecCCCCC
Confidence            69999999999999999999985 78999999987654

>PRK11445 putative oxidoreductase; Provisional

Probab=98.31  E-value=2.9e-06  Score=83.70  Aligned_cols=120  Identities=17%  Similarity=0.205  Sum_probs=67.7

Q ss_pred             CCcEEEEcCcHHHHHHHHHHHHcCCCCCcEEEEcCCCCC---CCCCCC---Cccc---cc-----CCCCCCCCC-----C
Q 012165           51 NREFVIVGGGNAAGYAARTFVEHGMADGRLCIVSKEAYA---PYERPA---LTKG---YL-----FPLDKKPAR-----L  111 (469)
Q Consensus        51 ~~~vvIIGgG~AGl~aA~~L~~~g~~~~~V~vie~~~~~---~~~~~~---l~~~---~~-----~~~~~~~~~-----~  111 (469)
                      ++||+||||||||+++|..|++. +   +|+++|+.+..   ++.++.   ++..   .+     ........+     .
T Consensus         1 ~~dV~IvGaGpaGl~~A~~La~~-~---~V~liE~~~~~~~~~~~~~~g~~l~~~~~~~L~~lgl~~~~~~~~~~~~~~~   76 (351)
T PRK11445          1 HYDVAIIGLGPAGSALARLLAGK-M---KVIAIDKKHQCGTEGFSKPCGGLLAPDAQKSFAKDGLTLPKDVIANPQIFAV   76 (351)
T ss_pred             CceEEEECCCHHHHHHHHHHhcc-C---CEEEEECCCccccccccCcCcCccCHHHHHHHHHcCCCCCcceeecccccee
Confidence            47999999999999999999987 7   79999988643   222211   1100   00     000000000     0


Q ss_pred             CC--Ccccc----CCCCC-C---CCHhHH---HHCCcEEEeCCcEEEEeCCCc--EEEe-CCCe--EEEeccEEeccCCC
Q 012165          112 PG--FHTCV----GSGGE-R---QTPEWY---KEKGIEMIYQDPVTSIDIEKQ--TLIT-NSGK--LLKYGSLIVATGCT  173 (469)
Q Consensus       112 ~~--~~~~~----~~~~~-~---~~~~~~---~~~~i~~~~~~~v~~id~~~~--~v~~-~~g~--~~~yd~lVlAtG~~  173 (469)
                      ..  +....    +.... .   .+.+++   ...+++++.++.+..+..+..  .|++ ++|+  ++++|+||.|+|..
T Consensus        77 ~~~~~~~~~~~~~~~~~~~i~R~~~~~~L~~~~~~gv~v~~~~~v~~i~~~~~~~~v~~~~~g~~~~i~a~~vV~AdG~~  156 (351)
T PRK11445         77 KTIDLANSLTRNYQRSYINIDRHKFDLWLKSLIPASVEVYHNSLCRKIWREDDGYHVIFRADGWEQHITARYLVGADGAN  156 (351)
T ss_pred             eEecccccchhhcCCCcccccHHHHHHHHHHHHhcCCEEEcCCEEEEEEEcCCEEEEEEecCCcEEEEEeCEEEECCCCC
Confidence            00  00000    00000 0   011222   245789999988988865443  3443 4564  68999999999976


Q ss_pred             C
Q 012165          174 A  174 (469)
Q Consensus       174 ~  174 (469)
                      .
T Consensus       157 S  157 (351)
T PRK11445        157 S  157 (351)
T ss_pred             c
Confidence            4

>PRK06185 hypothetical protein; Provisional

Probab=98.31  E-value=2.7e-06  Score=85.76  Aligned_cols=38  Identities=26%  Similarity=0.388  Sum_probs=33.9

Q ss_pred             CCCCCcEEEEcCcHHHHHHHHHHHHcCCCCCcEEEEcCCCC
Q 012165           48 ANENREFVIVGGGNAAGYAARTFVEHGMADGRLCIVSKEAY   88 (469)
Q Consensus        48 ~~~~~~vvIIGgG~AGl~aA~~L~~~g~~~~~V~vie~~~~   88 (469)
                      ..+.+||+|||||++|+++|..|++.|+   +|+|+|+.+.
T Consensus         3 ~~~~~dV~IvGgG~~Gl~~A~~La~~G~---~v~liE~~~~   40 (407)
T PRK06185          3 EVETTDCCIVGGGPAGMMLGLLLARAGV---DVTVLEKHAD   40 (407)
T ss_pred             ccccccEEEECCCHHHHHHHHHHHhCCC---cEEEEecCCc
Confidence            3466899999999999999999999987   7999998764

>PRK05732 2-octaprenyl-6-methoxyphenyl hydroxylase; Validated

Probab=98.31  E-value=4.4e-06  Score=83.79  Aligned_cols=42  Identities=17%  Similarity=0.314  Sum_probs=34.2

Q ss_pred             CCcEEEeCCcEEEEeCCCc--EEEeCCCeEEEeccEEeccCCCC
Q 012165          133 KGIEMIYQDPVTSIDIEKQ--TLITNSGKLLKYGSLIVATGCTA  174 (469)
Q Consensus       133 ~~i~~~~~~~v~~id~~~~--~v~~~~g~~~~yd~lVlAtG~~~  174 (469)
                      .+++++.+++++++..++.  .|+++++..+.+|.||.|.|...
T Consensus       126 ~g~~~~~~~~v~~i~~~~~~~~v~~~~g~~~~a~~vI~AdG~~S  169 (395)
T PRK05732        126 PGVTLHCPARVANVERTQGSVRVTLDDGETLTGRLLVAADGSHS  169 (395)
T ss_pred             CCcEEEcCCEEEEEEEcCCeEEEEECCCCEEEeCEEEEecCCCh
Confidence            4789999999999865443  56777888899999999999764

>COG1249 Lpd Pyruvate/2-oxoglutarate dehydrogenase complex, dihydrolipoamide dehydrogenase (E3) component, and related enzymes [Energy production and conversion]

Probab=98.31  E-value=2.5e-06  Score=85.73  Aligned_cols=99  Identities=19%  Similarity=0.339  Sum_probs=75.9

Q ss_pred             CCCCcEEEEcCcHHHHHHHHHHHHcCCCCCcEEEEcCCCCCCCCCCCCcccccCCCCCCCCCCCCCccccCCCCCCCCHh
Q 012165           49 NENREFVIVGGGNAAGYAARTFVEHGMADGRLCIVSKEAYAPYERPALTKGYLFPLDKKPARLPGFHTCVGSGGERQTPE  128 (469)
Q Consensus        49 ~~~~~vvIIGgG~AGl~aA~~L~~~g~~~~~V~vie~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  128 (469)
                      ..+++++|||||+-|+..|..+++.|.   +|||+|..+.+           +...+...              .....+
T Consensus       171 ~lP~~lvIiGgG~IGlE~a~~~~~LG~---~VTiie~~~~i-----------Lp~~D~ei--------------~~~~~~  222 (454)
T COG1249         171 ELPKSLVIVGGGYIGLEFASVFAALGS---KVTVVERGDRI-----------LPGEDPEI--------------SKELTK  222 (454)
T ss_pred             cCCCEEEEECCCHHHHHHHHHHHHcCC---cEEEEecCCCC-----------CCcCCHHH--------------HHHHHH
Confidence            456899999999999999999999987   89999988753           11111111              123455


Q ss_pred             HHHHCCcEEEeCCcEEEEeCCCc--EEEeCCCe--EEEeccEEeccCCCCC
Q 012165          129 WYKEKGIEMIYQDPVTSIDIEKQ--TLITNSGK--LLKYGSLIVATGCTAS  175 (469)
Q Consensus       129 ~~~~~~i~~~~~~~v~~id~~~~--~v~~~~g~--~~~yd~lVlAtG~~~~  175 (469)
                      .+++.+++++.++.+..+...+.  .++++++.  ++++|++++|+|-+|+
T Consensus       223 ~l~~~gv~i~~~~~v~~~~~~~~~v~v~~~~g~~~~~~ad~vLvAiGR~Pn  273 (454)
T COG1249         223 QLEKGGVKILLNTKVTAVEKKDDGVLVTLEDGEGGTIEADAVLVAIGRKPN  273 (454)
T ss_pred             HHHhCCeEEEccceEEEEEecCCeEEEEEecCCCCEEEeeEEEEccCCccC
Confidence            66777899999999999877654  56777766  6899999999998876

>PRK07588 hypothetical protein; Provisional

Probab=98.30  E-value=4.3e-06  Score=83.79  Aligned_cols=120  Identities=18%  Similarity=0.228  Sum_probs=69.6

Q ss_pred             cEEEEcCcHHHHHHHHHHHHcCCCCCcEEEEcCCCCCCCC-C-----C---------CCcccccC------------CCC
Q 012165           53 EFVIVGGGNAAGYAARTFVEHGMADGRLCIVSKEAYAPYE-R-----P---------ALTKGYLF------------PLD  105 (469)
Q Consensus        53 ~vvIIGgG~AGl~aA~~L~~~g~~~~~V~vie~~~~~~~~-~-----~---------~l~~~~~~------------~~~  105 (469)
                      ||+|||||++|+++|..|++.|+   +|+|+|+.+...-. +     +         .+...+..            ...
T Consensus         2 ~V~IVGgG~aGl~~A~~L~~~G~---~v~v~E~~~~~~~~g~~~~l~~~~~~~l~~lGl~~~l~~~~~~~~~~~~~~~~g   78 (391)
T PRK07588          2 KVAISGAGIAGPTLAYWLRRYGH---EPTLIERAPELRTGGYMVDFWGVGYEVAKRMGITDQLREAGYQIEHVRSVDPTG   78 (391)
T ss_pred             eEEEECccHHHHHHHHHHHHCCC---ceEEEeCCCCccCCCeEEeccCcHHHHHHHcCCHHHHHhccCCccceEEEcCCC
Confidence            79999999999999999999998   79999987643100 0     0         00000000            000


Q ss_pred             CCCCCCC--CCccccCCCCCCC----CHhHH---HHCCcEEEeCCcEEEEeCCCc--EEEeCCCeEEEeccEEeccCCCC
Q 012165          106 KKPARLP--GFHTCVGSGGERQ----TPEWY---KEKGIEMIYQDPVTSIDIEKQ--TLITNSGKLLKYGSLIVATGCTA  174 (469)
Q Consensus       106 ~~~~~~~--~~~~~~~~~~~~~----~~~~~---~~~~i~~~~~~~v~~id~~~~--~v~~~~g~~~~yd~lVlAtG~~~  174 (469)
                      .....++  .+....+......    +.+.+   ...+++++.+++|++++.+..  +|++++|+++.+|.||-|.|.+.
T Consensus        79 ~~~~~~~~~~~~~~~g~~~~~i~r~~l~~~L~~~~~~~v~i~~~~~v~~i~~~~~~v~v~~~~g~~~~~d~vIgADG~~S  158 (391)
T PRK07588         79 RRKADLNVDSFRRMVGDDFTSLPRGDLAAAIYTAIDGQVETIFDDSIATIDEHRDGVRVTFERGTPRDFDLVIGADGLHS  158 (391)
T ss_pred             CEEEEecHHHccccCCCceEEEEHHHHHHHHHHhhhcCeEEEeCCEEeEEEECCCeEEEEECCCCEEEeCEEEECCCCCc
Confidence            0000000  0000000000000    01111   134689999999999986554  46778898899999999999764


Q ss_pred             C
Q 012165          175 S  175 (469)
Q Consensus       175 ~  175 (469)
                      .
T Consensus       159 ~  159 (391)
T PRK07588        159 H  159 (391)
T ss_pred             c
Confidence            3

>COG1233 Phytoene dehydrogenase and related proteins [Secondary metabolites biosynthesis, transport, and catabolism]

Probab=98.30  E-value=1.4e-06  Score=89.42  Aligned_cols=51  Identities=24%  Similarity=0.433  Sum_probs=43.3

Q ss_pred             eeHHHHHHcCcEEEcCCeEEEEEeCCCCcEEEEEcCCCCEEeCCEEEEccCC
Q 012165          235 RYEQLYQQNGVKFVKGASIKNLEAGSDGRVAAVKLEDGSTIDADTIVIGIGA  286 (469)
Q Consensus       235 ~~~~~l~~~gV~~~~~~~v~~i~~~~~~~v~~v~~~~g~~i~~D~vi~a~G~  286 (469)
                      .+.+.+++.|++|+++++|++|..+ +++.+++...+|+.+++|.||.....
T Consensus       229 aL~~~~~~~Gg~I~~~~~V~~I~v~-~g~g~~~~~~~g~~~~ad~vv~~~~~  279 (487)
T COG1233         229 ALAELAREHGGEIRTGAEVSQILVE-GGKGVGVRTSDGENIEADAVVSNADP  279 (487)
T ss_pred             HHHHHHHHcCCEEECCCceEEEEEe-CCcceEEeccccceeccceeEecCch
Confidence            6778889999999999999999854 55555788888878999999998776

>PRK13512 coenzyme A disulfide reductase; Provisional

Probab=98.30  E-value=2.4e-06  Score=86.88  Aligned_cols=95  Identities=14%  Similarity=0.254  Sum_probs=73.6

Q ss_pred             CCcEEEEcCcHHHHHHHHHHHHcCCCCCcEEEEcCCCCCCCCCCCCcccccCCCCCCCCCCCCCccccCCCCCCCCHhHH
Q 012165           51 NREFVIVGGGNAAGYAARTFVEHGMADGRLCIVSKEAYAPYERPALTKGYLFPLDKKPARLPGFHTCVGSGGERQTPEWY  130 (469)
Q Consensus        51 ~~~vvIIGgG~AGl~aA~~L~~~g~~~~~V~vie~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  130 (469)
                      .++++|||||+.|+.+|..|++.|.   +|++++..+...   +.+.        .   ++           .....+.+
T Consensus       148 ~~~vvViGgG~ig~E~A~~l~~~g~---~Vtli~~~~~l~---~~~d--------~---~~-----------~~~l~~~l  199 (438)
T PRK13512        148 VDKALVVGAGYISLEVLENLYERGL---HPTLIHRSDKIN---KLMD--------A---DM-----------NQPILDEL  199 (438)
T ss_pred             CCEEEEECCCHHHHHHHHHHHhCCC---cEEEEecccccc---hhcC--------H---HH-----------HHHHHHHH
Confidence            4689999999999999999999876   799999875421   1000        0   00           11345667


Q ss_pred             HHCCcEEEeCCcEEEEeCCCcEEEeCCCeEEEeccEEeccCCCCC
Q 012165          131 KEKGIEMIYQDPVTSIDIEKQTLITNSGKLLKYGSLIVATGCTAS  175 (469)
Q Consensus       131 ~~~~i~~~~~~~v~~id~~~~~v~~~~g~~~~yd~lVlAtG~~~~  175 (469)
                      ++.||+++.+.++.+++.  ..+++.+|+.+++|.+++|+|.+|.
T Consensus       200 ~~~gI~i~~~~~v~~i~~--~~v~~~~g~~~~~D~vl~a~G~~pn  242 (438)
T PRK13512        200 DKREIPYRLNEEIDAING--NEVTFKSGKVEHYDMIIEGVGTHPN  242 (438)
T ss_pred             HhcCCEEEECCeEEEEeC--CEEEECCCCEEEeCEEEECcCCCcC
Confidence            889999999999999974  4677788888999999999998875

>TIGR01424 gluta_reduc_2 glutathione-disulfide reductase, plant

Probab=98.29  E-value=2.2e-06  Score=87.27  Aligned_cols=97  Identities=19%  Similarity=0.277  Sum_probs=73.3

Q ss_pred             CCcEEEEcCcHHHHHHHHHHHHcCCCCCcEEEEcCCCCCCCCCCCCcccccCCCCCCCCCCCCCccccCCCCCCCCHhHH
Q 012165           51 NREFVIVGGGNAAGYAARTFVEHGMADGRLCIVSKEAYAPYERPALTKGYLFPLDKKPARLPGFHTCVGSGGERQTPEWY  130 (469)
Q Consensus        51 ~~~vvIIGgG~AGl~aA~~L~~~g~~~~~V~vie~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  130 (469)
                      .++++|||||+.|+.+|..|++.|.   +|+++++.+.+.   +.+        .   .++           .....+.+
T Consensus       166 ~~~vvVIGgG~~g~E~A~~l~~~G~---~Vtli~~~~~~l---~~~--------d---~~~-----------~~~l~~~l  217 (446)
T TIGR01424       166 PKSILILGGGYIAVEFAGIWRGLGV---QVTLIYRGELIL---RGF--------D---DDM-----------RALLARNM  217 (446)
T ss_pred             CCeEEEECCcHHHHHHHHHHHHcCC---eEEEEEeCCCCC---ccc--------C---HHH-----------HHHHHHHH
Confidence            4689999999999999999999876   799999765421   000        0   000           11234567


Q ss_pred             HHCCcEEEeCCcEEEEeCCC--cEEEeCCCeEEEeccEEeccCCCCC
Q 012165          131 KEKGIEMIYQDPVTSIDIEK--QTLITNSGKLLKYGSLIVATGCTAS  175 (469)
Q Consensus       131 ~~~~i~~~~~~~v~~id~~~--~~v~~~~g~~~~yd~lVlAtG~~~~  175 (469)
                      ++.|++++.++++.+++..+  ..+.+.+++++++|.||+|+|..|.
T Consensus       218 ~~~gV~i~~~~~v~~i~~~~~~~~v~~~~g~~i~~D~viva~G~~pn  264 (446)
T TIGR01424       218 EGRGIRIHPQTSLTSITKTDDGLKVTLSHGEEIVADVVLFATGRSPN  264 (446)
T ss_pred             HHCCCEEEeCCEEEEEEEcCCeEEEEEcCCcEeecCEEEEeeCCCcC
Confidence            88999999999999997533  3566777888999999999998876

The tripeptide glutathione is an important reductant, e.g., for maintaining the cellular thiol/disulfide status and for protecting against reactive oxygen species such as hydrogen peroxide. Glutathione-disulfide reductase regenerates reduced glutathione from oxidized glutathione (glutathione disulfide) + NADPH. This model represents one of two closely related subfamilies of glutathione-disulfide reductase. Both are closely related to trypanothione reductase, and separate models are built so each of the three can describe proteins with conserved function. This model describes glutathione-disulfide reductases of plants and some bacteria, including cyanobacteria.

>TIGR02734 crtI_fam phytoene desaturase

Probab=98.29  E-value=2.1e-06  Score=88.99  Aligned_cols=52  Identities=29%  Similarity=0.436  Sum_probs=44.0

Q ss_pred             eeHHHHHHcCcEEEcCCeEEEEEeCCCCcEEEEEcCCCCEEeCCEEEEccCCc
Q 012165          235 RYEQLYQQNGVKFVKGASIKNLEAGSDGRVAAVKLEDGSTIDADTIVIGIGAK  287 (469)
Q Consensus       235 ~~~~~l~~~gV~~~~~~~v~~i~~~~~~~v~~v~~~~g~~i~~D~vi~a~G~~  287 (469)
                      .+.+.+++.|+++++++.|++|..+ ++++.+|++++|+++.+|.||++++..
T Consensus       224 al~~~~~~~G~~i~~~~~V~~i~~~-~~~~~~V~~~~g~~~~ad~VI~a~~~~  275 (502)
T TIGR02734       224 AMAKLAEDLGGELRLNAEVIRIETE-GGRATAVHLADGERLDADAVVSNADLH  275 (502)
T ss_pred             HHHHHHHHCCCEEEECCeEEEEEee-CCEEEEEEECCCCEEECCEEEECCcHH
Confidence            5667778899999999999999854 556668899999999999999998864

Phytoene is converted to lycopene by desaturation at four (two symmetrical pairs of) sites. This is achieved by two enzymes (crtP and crtQ) in cyanobacteria (Gloeobacter being an exception) and plants, but by a single enzyme in most other bacteria and in fungi. This single enzyme is called the bacterial-type phytoene desaturase, or CrtI. Most members of this family, part of the larger Pfam family pfam01593, which also contains amino oxidases, are CrtI itself; it is likely that all members act on either phytoene or on related compounds such as dehydrosqualene, for carotenoid biosynthesis.

>PRK08850 2-octaprenyl-6-methoxyphenol hydroxylase; Validated

Probab=98.29  E-value=2.6e-06  Score=85.78  Aligned_cols=42  Identities=17%  Similarity=0.296  Sum_probs=34.6

Q ss_pred             CCcEEEeCCcEEEEeCCC--cEEEeCCCeEEEeccEEeccCCCC
Q 012165          133 KGIEMIYQDPVTSIDIEK--QTLITNSGKLLKYGSLIVATGCTA  174 (469)
Q Consensus       133 ~~i~~~~~~~v~~id~~~--~~v~~~~g~~~~yd~lVlAtG~~~  174 (469)
                      .+++++.+.+|++++.++  .+|++++|+++.+|.||.|.|...
T Consensus       125 ~~v~v~~~~~v~~i~~~~~~~~v~~~~g~~~~a~lvIgADG~~S  168 (405)
T PRK08850        125 DNVTLLMPARCQSIAVGESEAWLTLDNGQALTAKLVVGADGANS  168 (405)
T ss_pred             CCeEEEcCCeeEEEEeeCCeEEEEECCCCEEEeCEEEEeCCCCC
Confidence            378999999999986544  367788898999999999999764

>PRK06134 putative FAD-binding dehydrogenase; Reviewed

Probab=98.29  E-value=7.4e-06  Score=86.09  Aligned_cols=54  Identities=31%  Similarity=0.452  Sum_probs=40.9

Q ss_pred             eeHHHHHHcCcEEEcCCeEEEEEeCCCCcEEEEEcC--CCC-EEeC-CEEEEccCCccC
Q 012165          235 RYEQLYQQNGVKFVKGASIKNLEAGSDGRVAAVKLE--DGS-TIDA-DTIVIGIGAKPT  289 (469)
Q Consensus       235 ~~~~~l~~~gV~~~~~~~v~~i~~~~~~~v~~v~~~--~g~-~i~~-D~vi~a~G~~p~  289 (469)
                      .+.+..++.|++++.++.++++..+ ++++.+|...  ++. ++.+ +.||+|+|--.+
T Consensus       222 ~L~~~a~~~Gv~i~~~t~v~~l~~~-~g~v~GV~~~~~~~~~~i~a~k~VVlAtGg~~~  279 (581)
T PRK06134        222 RLLKSAEDLGVRIWESAPARELLRE-DGRVAGAVVETPGGLQEIRARKGVVLAAGGFPH  279 (581)
T ss_pred             HHHHHHHhCCCEEEcCCEEEEEEEe-CCEEEEEEEEECCcEEEEEeCCEEEEcCCCccc
Confidence            4556678899999999999998754 5777676553  332 5788 999999987654

>PRK06116 glutathione reductase; Validated

Probab=98.28  E-value=2.6e-06  Score=86.94  Aligned_cols=98  Identities=19%  Similarity=0.221  Sum_probs=74.5

Q ss_pred             CCcEEEEcCcHHHHHHHHHHHHcCCCCCcEEEEcCCCCCCCCCCCCcccccCCCCCCCCCCCCCccccCCCCCCCCHhHH
Q 012165           51 NREFVIVGGGNAAGYAARTFVEHGMADGRLCIVSKEAYAPYERPALTKGYLFPLDKKPARLPGFHTCVGSGGERQTPEWY  130 (469)
Q Consensus        51 ~~~vvIIGgG~AGl~aA~~L~~~g~~~~~V~vie~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  130 (469)
                      .++++|||+|+.|+.+|..|++.|.   +|+++++.+.+.   +.+        +.   .+           .....+.+
T Consensus       167 ~~~vvViGgG~~g~E~A~~l~~~g~---~Vtlv~~~~~~l---~~~--------~~---~~-----------~~~l~~~L  218 (450)
T PRK06116        167 PKRVAVVGAGYIAVEFAGVLNGLGS---ETHLFVRGDAPL---RGF--------DP---DI-----------RETLVEEM  218 (450)
T ss_pred             CCeEEEECCCHHHHHHHHHHHHcCC---eEEEEecCCCCc---ccc--------CH---HH-----------HHHHHHHH
Confidence            4799999999999999999999876   799999765421   000        00   00           12345667


Q ss_pred             HHCCcEEEeCCcEEEEeCCC---cEEEeCCCeEEEeccEEeccCCCCCc
Q 012165          131 KEKGIEMIYQDPVTSIDIEK---QTLITNSGKLLKYGSLIVATGCTASR  176 (469)
Q Consensus       131 ~~~~i~~~~~~~v~~id~~~---~~v~~~~g~~~~yd~lVlAtG~~~~~  176 (469)
                      ++.|++++.+++|.+++.+.   ..+.+.+|+++++|.+|+|+|.+|..
T Consensus       219 ~~~GV~i~~~~~V~~i~~~~~g~~~v~~~~g~~i~~D~Vv~a~G~~p~~  267 (450)
T PRK06116        219 EKKGIRLHTNAVPKAVEKNADGSLTLTLEDGETLTVDCLIWAIGREPNT  267 (450)
T ss_pred             HHCCcEEECCCEEEEEEEcCCceEEEEEcCCcEEEeCEEEEeeCCCcCC
Confidence            88999999999999997642   35677788889999999999988763

>TIGR01988 Ubi-OHases Ubiquinone biosynthesis hydroxylase, UbiH/UbiF/VisC/COQ6 family

Probab=98.28  E-value=2.6e-06  Score=85.14  Aligned_cols=119  Identities=19%  Similarity=0.308  Sum_probs=70.2

Q ss_pred             cEEEEcCcHHHHHHHHHHHHcCCCCCcEEEEcCCCCCCCC------C-CCCcc---ccc-----CCC-CC-CCCCCCCCc
Q 012165           53 EFVIVGGGNAAGYAARTFVEHGMADGRLCIVSKEAYAPYE------R-PALTK---GYL-----FPL-DK-KPARLPGFH  115 (469)
Q Consensus        53 ~vvIIGgG~AGl~aA~~L~~~g~~~~~V~vie~~~~~~~~------~-~~l~~---~~~-----~~~-~~-~~~~~~~~~  115 (469)
                      ||+|||||+||+++|..|+++|+   +|+|+|+.+.....      + ..++.   ..+     ... .. ......++.
T Consensus         1 dViIvGaG~aGl~~A~~L~~~G~---~v~v~Er~~~~~~~~~~~~~~~~~l~~~~~~~l~~lGl~~~~~~~~~~~~~~~~   77 (385)
T TIGR01988         1 DIVIVGGGMVGLALALALARSGL---KIALIEATPAEAAATPGFDNRVSALSAASIRLLEKLGVWDKIEPDRAQPIRDIH   77 (385)
T ss_pred             CEEEECCCHHHHHHHHHHhcCCC---EEEEEeCCCccccCCCCCCcceeecCHHHHHHHHHCCchhhhhhhcCCCceEEE
Confidence            69999999999999999999987   79999998753211      0 00000   000     000 00 000000000


Q ss_pred             cccC------------------------CCCCCCCHhHHHHCC-cEEEeCCcEEEEeCCCc--EEEeCCCeEEEeccEEe
Q 012165          116 TCVG------------------------SGGERQTPEWYKEKG-IEMIYQDPVTSIDIEKQ--TLITNSGKLLKYGSLIV  168 (469)
Q Consensus       116 ~~~~------------------------~~~~~~~~~~~~~~~-i~~~~~~~v~~id~~~~--~v~~~~g~~~~yd~lVl  168 (469)
                      ....                        ......+.+.+.+.+ ++++.+++|+.++....  .+++++|+++.+|.||.
T Consensus        78 ~~~~~~~~~~~~~~~~~~~~~~~~~i~r~~l~~~L~~~~~~~~~~~v~~~~~v~~i~~~~~~~~v~~~~g~~~~~~~vi~  157 (385)
T TIGR01988        78 VSDGGSFGALHFDADEIGLEALGYVVENRVLQQALWERLQEYPNVTLLCPARVVELPRHSDHVELTLDDGQQLRARLLVG  157 (385)
T ss_pred             EEeCCCCceEEechhhcCCCccEEEEEcHHHHHHHHHHHHhCCCcEEecCCeEEEEEecCCeeEEEECCCCEEEeeEEEE
Confidence            0000                        000000112234455 89999999999976554  45667888899999999


Q ss_pred             ccCCCC
Q 012165          169 ATGCTA  174 (469)
Q Consensus       169 AtG~~~  174 (469)
                      |.|...
T Consensus       158 adG~~S  163 (385)
T TIGR01988       158 ADGANS  163 (385)
T ss_pred             eCCCCC
Confidence            999764

This model represents a family of FAD-dependent hydroxylases (monooxygenases) which are all believed to act in the aerobic ubiquinone biosynthesis pathway. A separate set of hydroxylases, as yet undiscovered, are believed to be active under anaerobic conditions. In E. coli three enzyme activities have been described, UbiB (which acts first at position 6, see TIGR01982), UbiH (which acts at position 4, ) and UbiF (which acts at position 5). UbiH and UbiF are similar to one another and form the basis of this subfamily. Interestingly, E. coli contains another hydroxylase gene, called visC, that is highly similar to UbiF, adjacent to UbiH and, when mutated, results in a phenotype similar to that of UbiH (which has also been named visB). Several other species appear to have three homologs in this family, although they assort themselves differently on phylogenetic trees (e.g. Xylella and Mesorhizobium) maki

>TIGR01984 UbiH 2-polyprenyl-6-methoxyphenol 4-hydroxylase

Probab=98.28  E-value=2.3e-06  Score=85.41  Aligned_cols=119  Identities=19%  Similarity=0.252  Sum_probs=69.8

Q ss_pred             cEEEEcCcHHHHHHHHHHHHcC-CCCCcEEEEcCCCCCCCC-----C-CCCcc---ccc--CCC-CCC---CCCCCCCc-
Q 012165           53 EFVIVGGGNAAGYAARTFVEHG-MADGRLCIVSKEAYAPYE-----R-PALTK---GYL--FPL-DKK---PARLPGFH-  115 (469)
Q Consensus        53 ~vvIIGgG~AGl~aA~~L~~~g-~~~~~V~vie~~~~~~~~-----~-~~l~~---~~~--~~~-~~~---~~~~~~~~-  115 (469)
                      ||+|||||+||+++|..|+++| +   +|+|+|+.+.....     + ..+..   ..+  .+. ...   ......+. 
T Consensus         1 dv~IvGaG~aGl~~A~~L~~~G~~---~v~v~E~~~~~~~~~~~~~~~~~l~~~~~~~l~~lgl~~~~~~~~~~~~~~~~   77 (382)
T TIGR01984         1 DVIIVGGGLVGLSLALALSRLGKI---KIALIEANSPSAAQPGFDARSLALSYGSKQILEKLGLWPKLAPFATPILDIHV   77 (382)
T ss_pred             CEEEECccHHHHHHHHHHhcCCCc---eEEEEeCCCccccCCCCCCeeEeccHHHHHHHHHCCChhhhHhhcCccceEEE
Confidence            6999999999999999999999 8   79999998654221     0 00000   000  000 000   00000000 


Q ss_pred             ---------cccCCC--------------CCCCCHhHHHH-CCcEEEeCCcEEEEeCCCc--EEEeCCCeEEEeccEEec
Q 012165          116 ---------TCVGSG--------------GERQTPEWYKE-KGIEMIYQDPVTSIDIEKQ--TLITNSGKLLKYGSLIVA  169 (469)
Q Consensus       116 ---------~~~~~~--------------~~~~~~~~~~~-~~i~~~~~~~v~~id~~~~--~v~~~~g~~~~yd~lVlA  169 (469)
                               .....+              ....+.+.+.+ .|++++.+++|+++..+..  ++++++|.++.+|.||.|
T Consensus        78 ~~~~~~~~~~~~~~~~~~~~~~~~i~r~~l~~~L~~~~~~~~gv~~~~~~~v~~i~~~~~~~~v~~~~g~~~~ad~vV~A  157 (382)
T TIGR01984        78 SDQGHFGATHLRASEFGLPALGYVVELADLGQALLSRLALLTNIQLYCPARYKEIIRNQDYVRVTLDNGQQLRAKLLIAA  157 (382)
T ss_pred             EcCCCCceEEechhhcCCCccEEEEEcHHHHHHHHHHHHhCCCcEEEcCCeEEEEEEcCCeEEEEECCCCEEEeeEEEEe
Confidence                     000000              00001122234 4899999999999865443  567778888999999999


Q ss_pred             cCCCC
Q 012165          170 TGCTA  174 (469)
Q Consensus       170 tG~~~  174 (469)
                      .|...
T Consensus       158 dG~~S  162 (382)
T TIGR01984       158 DGANS  162 (382)
T ss_pred             cCCCh
Confidence            99763

This model represents the FAD-dependent monoxygenase responsible for the second hydroxylation step in the aerobic ubiquinone bioynthetic pathway. The scope of this model is limited to the proteobacteria. This family is closely related to the UbiF hydroxylase which catalyzes the final hydroxylation step. The enzyme has also been named VisB due to a mutant VISible light sensitive phenotype.

>COG3380 Predicted NAD/FAD-dependent oxidoreductase [General function prediction only]

Probab=98.27  E-value=3e-06  Score=76.77  Aligned_cols=35  Identities=29%  Similarity=0.281  Sum_probs=32.0

Q ss_pred             CcEEEEcCcHHHHHHHHHHHHcCCCCCcEEEEcCCCCC
Q 012165           52 REFVIVGGGNAAGYAARTFVEHGMADGRLCIVSKEAYA   89 (469)
Q Consensus        52 ~~vvIIGgG~AGl~aA~~L~~~g~~~~~V~vie~~~~~   89 (469)
                      .+|+|||+|+||++||..|+..|.   +|||+||....
T Consensus         2 ~siaIVGaGiAGl~aA~~L~~aG~---~vtV~eKg~Gv   36 (331)
T COG3380           2 PSIAIVGAGIAGLAAAYALREAGR---EVTVFEKGRGV   36 (331)
T ss_pred             CcEEEEccchHHHHHHHHHHhcCc---EEEEEEcCCCc
Confidence            479999999999999999999998   89999998743

>PRK06753 hypothetical protein; Provisional

Probab=98.27  E-value=4.8e-06  Score=82.90  Aligned_cols=116  Identities=20%  Similarity=0.173  Sum_probs=68.3

Q ss_pred             cEEEEcCcHHHHHHHHHHHHcCCCCCcEEEEcCCCCCCCCC---------------CCCcccc------------cCCCC
Q 012165           53 EFVIVGGGNAAGYAARTFVEHGMADGRLCIVSKEAYAPYER---------------PALTKGY------------LFPLD  105 (469)
Q Consensus        53 ~vvIIGgG~AGl~aA~~L~~~g~~~~~V~vie~~~~~~~~~---------------~~l~~~~------------~~~~~  105 (469)
                      +|+|||||+||+++|..|++.|+   +++|+|+.+......               ..+....            ..+..
T Consensus         2 ~V~IvGgG~aGl~~A~~L~~~g~---~v~v~E~~~~~~~~g~gi~l~~~~~~~L~~~gl~~~~~~~~~~~~~~~~~~~~g   78 (373)
T PRK06753          2 KIAIIGAGIGGLTAAALLQEQGH---EVKVFEKNESVKEVGAGIGIGDNVIKKLGNHDLAKGIKNAGQILSTMNLLDDKG   78 (373)
T ss_pred             EEEEECCCHHHHHHHHHHHhCCC---cEEEEecCCcccccccceeeChHHHHHHHhcChHHHHHhcCCcccceeEEcCCC
Confidence            79999999999999999999998   799999987532110               0000000            00000


Q ss_pred             CCCCCCCCCccccCCCCC----CCCHhHHHH--CCcEEEeCCcEEEEeCCCc--EEEeCCCeEEEeccEEeccCCCC
Q 012165          106 KKPARLPGFHTCVGSGGE----RQTPEWYKE--KGIEMIYQDPVTSIDIEKQ--TLITNSGKLLKYGSLIVATGCTA  174 (469)
Q Consensus       106 ~~~~~~~~~~~~~~~~~~----~~~~~~~~~--~~i~~~~~~~v~~id~~~~--~v~~~~g~~~~yd~lVlAtG~~~  174 (469)
                      ......+ +  ..+....    ..+.+.+.+  .+.+++.++++++++.++.  +|++++|+++.+|.||-|.|.+.
T Consensus        79 ~~~~~~~-~--~~~~~~~~i~R~~l~~~L~~~~~~~~i~~~~~v~~i~~~~~~v~v~~~~g~~~~~~~vigadG~~S  152 (373)
T PRK06753         79 TLLNKVK-L--KSNTLNVTLHRQTLIDIIKSYVKEDAIFTGKEVTKIENETDKVTIHFADGESEAFDLCIGADGIHS  152 (373)
T ss_pred             CEEeecc-c--ccCCccccccHHHHHHHHHHhCCCceEEECCEEEEEEecCCcEEEEECCCCEEecCEEEECCCcch
Confidence            0000000 0  0000000    001122222  2456888999999976554  56778888899999999999653

>PRK05249 soluble pyridine nucleotide transhydrogenase; Provisional

Probab=98.27  E-value=3.1e-06  Score=86.76  Aligned_cols=98  Identities=19%  Similarity=0.309  Sum_probs=74.0

Q ss_pred             CCCcEEEEcCcHHHHHHHHHHHHcCCCCCcEEEEcCCCCCCCCCCCCcccccCCCCCCCCCCCCCccccCCCCCCCCHhH
Q 012165           50 ENREFVIVGGGNAAGYAARTFVEHGMADGRLCIVSKEAYAPYERPALTKGYLFPLDKKPARLPGFHTCVGSGGERQTPEW  129 (469)
Q Consensus        50 ~~~~vvIIGgG~AGl~aA~~L~~~g~~~~~V~vie~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  129 (469)
                      ..++++|||||+.|+.+|..|++.|.   +|+|+++.+...   +.+        +.   .+           .....+.
T Consensus       174 ~~~~v~IiGgG~~g~E~A~~l~~~g~---~Vtli~~~~~~l---~~~--------d~---~~-----------~~~l~~~  225 (461)
T PRK05249        174 LPRSLIIYGAGVIGCEYASIFAALGV---KVTLINTRDRLL---SFL--------DD---EI-----------SDALSYH  225 (461)
T ss_pred             cCCeEEEECCCHHHHHHHHHHHHcCC---eEEEEecCCCcC---CcC--------CH---HH-----------HHHHHHH
Confidence            35799999999999999999999986   799999875421   000        00   00           1234456


Q ss_pred             HHHCCcEEEeCCcEEEEeCCCc--EEEeCCCeEEEeccEEeccCCCCC
Q 012165          130 YKEKGIEMIYQDPVTSIDIEKQ--TLITNSGKLLKYGSLIVATGCTAS  175 (469)
Q Consensus       130 ~~~~~i~~~~~~~v~~id~~~~--~v~~~~g~~~~yd~lVlAtG~~~~  175 (469)
                      +++.+++++.++++..++..+.  .+++.+|+++++|.+++|+|.+|.
T Consensus       226 l~~~gI~v~~~~~v~~i~~~~~~~~v~~~~g~~i~~D~vi~a~G~~p~  273 (461)
T PRK05249        226 LRDSGVTIRHNEEVEKVEGGDDGVIVHLKSGKKIKADCLLYANGRTGN  273 (461)
T ss_pred             HHHcCCEEEECCEEEEEEEeCCeEEEEECCCCEEEeCEEEEeecCCcc
Confidence            7888999999999999875433  456677888999999999998876

>TIGR01789 lycopene_cycl lycopene cyclase

Probab=98.27  E-value=3.9e-06  Score=83.09  Aligned_cols=114  Identities=16%  Similarity=0.187  Sum_probs=65.6

Q ss_pred             cEEEEcCcHHHHHHHHHHHHc--CCCCCcEEEEcCCCCCCCCCCCCcccccCCCCC----------CCCCCCCCccccC-
Q 012165           53 EFVIVGGGNAAGYAARTFVEH--GMADGRLCIVSKEAYAPYERPALTKGYLFPLDK----------KPARLPGFHTCVG-  119 (469)
Q Consensus        53 ~vvIIGgG~AGl~aA~~L~~~--g~~~~~V~vie~~~~~~~~~~~l~~~~~~~~~~----------~~~~~~~~~~~~~-  119 (469)
                      ||+|||||+||+++|..|++.  |+   +|+++|+.+..+-+++.   .++.....          ...+++....... 
T Consensus         1 DviIvGaG~AGl~lA~~L~~~~~g~---~V~lle~~~~~~~~~tw---~~~~~~~~~~~~~~~~~~v~~~W~~~~v~~~~   74 (370)
T TIGR01789         1 DCIIVGGGLAGGLIALRLQRARPDF---RIRVIEAGRTIGGNHTW---SFFDSDLSDAQHAWLADLVQTDWPGYEVRFPK   74 (370)
T ss_pred             CEEEECccHHHHHHHHHHHhcCCCC---eEEEEeCCCCCCCcccc---eecccccchhhhhhhhhhheEeCCCCEEECcc
Confidence            799999999999999999987  55   89999998743321110   01100000          0011111100000 


Q ss_pred             -------CCCCCCCH---hH-HHHCCcEEEeCCcEEEEeCCCcEEEeCCCeEEEeccEEeccCCCC
Q 012165          120 -------SGGERQTP---EW-YKEKGIEMIYQDPVTSIDIEKQTLITNSGKLLKYGSLIVATGCTA  174 (469)
Q Consensus       120 -------~~~~~~~~---~~-~~~~~i~~~~~~~v~~id~~~~~v~~~~g~~~~yd~lVlAtG~~~  174 (469)
                             .+......   +. .+..+..+.++++|..++.+  .|++.+|+++.+|.||-|.|..+
T Consensus        75 ~~~~l~~~Y~~I~r~~f~~~l~~~l~~~i~~~~~V~~v~~~--~v~l~dg~~~~A~~VI~A~G~~s  138 (370)
T TIGR01789        75 YRRKLKTAYRSMTSTRFHEGLLQAFPEGVILGRKAVGLDAD--GVDLAPGTRINARSVIDCRGFKP  138 (370)
T ss_pred             hhhhcCCCceEEEHHHHHHHHHHhhcccEEecCEEEEEeCC--EEEECCCCEEEeeEEEECCCCCC
Confidence                   00000011   11 12223336667899988654  37778899999999999999764

This model represents a family of bacterial lycopene cyclases catalyzing the transformation of lycopene to carotene. These enzymes are found in a limited spectrum of alpha and gamma proteobacteria as well as Flavobacterium.

>PLN00093 geranylgeranyl diphosphate reductase; Provisional

Probab=98.26  E-value=4.1e-06  Score=84.99  Aligned_cols=40  Identities=20%  Similarity=0.453  Sum_probs=35.3

Q ss_pred             cCCCCCCcEEEEcCcHHHHHHHHHHHHcCCCCCcEEEEcCCCC
Q 012165           46 SFANENREFVIVGGGNAAGYAARTFVEHGMADGRLCIVSKEAY   88 (469)
Q Consensus        46 ~~~~~~~~vvIIGgG~AGl~aA~~L~~~g~~~~~V~vie~~~~   88 (469)
                      ++..+++||+||||||||++||..|++.|+   +|+|+|+...
T Consensus        34 ~~~~~~~DViIVGaGPAG~~aA~~LA~~G~---~VlllEr~~~   73 (450)
T PLN00093         34 KLSGRKLRVAVIGGGPAGACAAETLAKGGI---ETFLIERKLD   73 (450)
T ss_pred             CcCCCCCeEEEECCCHHHHHHHHHHHhCCC---cEEEEecCCC
Confidence            455667999999999999999999999998   7999998753

>TIGR02731 phytoene_desat phytoene desaturase

Probab=98.26  E-value=6e-06  Score=84.43  Aligned_cols=52  Identities=21%  Similarity=0.300  Sum_probs=42.4

Q ss_pred             eeHHHHHHcCcEEEcCCeEEEEEeCCCCcEEEEEcCCCC-----EEeCCEEEEccCC
Q 012165          235 RYEQLYQQNGVKFVKGASIKNLEAGSDGRVAAVKLEDGS-----TIDADTIVIGIGA  286 (469)
Q Consensus       235 ~~~~~l~~~gV~~~~~~~v~~i~~~~~~~v~~v~~~~g~-----~i~~D~vi~a~G~  286 (469)
                      .+.+.+++.|+++++++.|++|+..+++++.+|.+.+|+     ++.+|.||+++..
T Consensus       218 ~l~~~l~~~g~~i~l~~~V~~I~~~~~~~v~~v~~~~~~~~~~~~~~a~~VI~a~p~  274 (453)
T TIGR02731       218 PIVDYITSRGGEVRLNSRLKEIVLNEDGSVKHFVLADGEGQRRFEVTADAYVSAMPV  274 (453)
T ss_pred             HHHHHHHhcCCEEeCCCeeEEEEECCCCCEEEEEEecCCCCceeEEECCEEEEcCCH
Confidence            445667778999999999999986566767778887765     7999999999865

Plants and cyanobacteria (and, supposedly, Chlorobium tepidum) have a conserved pathway from two molecules geranylgeranyl-PP to one of all-trans-lycopene. Members of this family are the enzyme pytoene desaturase (also called phytoene dehydrogenase). This model does not include the region of the chloroplast transit peptide in plants. A closely related family, excluded by this model, is zeta-carotene desaturase, another enzyme in the same pathway.

>PRK07843 3-ketosteroid-delta-1-dehydrogenase; Reviewed

Probab=98.26  E-value=6.7e-07  Score=93.40  Aligned_cols=89  Identities=20%  Similarity=0.271  Sum_probs=60.1

Q ss_pred             cCCeEEEEcCChHHHHHHHH-------HHhCCCeE------------------eeeHHHHHHcCcEEEcCCeEEEEEeCC
Q 012165          206 KAKKVVVVGGGYIGMEVAAA-------AVGWKLDT------------------TRYEQLYQQNGVKFVKGASIKNLEAGS  260 (469)
Q Consensus       206 ~~~~vvVvG~G~~g~e~A~~-------l~~~g~~v------------------~~~~~~l~~~gV~~~~~~~v~~i~~~~  260 (469)
                      .++.++++|++.++++++..       +.+++.++                  ..+.+.+++.||++++++.++++..+ 
T Consensus       159 ~p~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~g~~~~~~L~~~~~~~gv~v~~~t~v~~l~~~-  237 (557)
T PRK07843        159 VPLNMVVMQQDYVWLNLLKRHPRGVLRALKVGARTLWAKATGKNLLGMGQALAAGLRIGLQRAGVPVLLNTPLTDLYVE-  237 (557)
T ss_pred             ccccccccHHHHHHHHhhhcCchhHHHHHHHHHHHHHHhccCCCcccCcHHHHHHHHHHHHcCCCEEEeCCEEEEEEEe-
Confidence            35678899999999987753       22211110                  04556778899999999999999854 


Q ss_pred             CCcEEEEEcC-CCC--EEeCC-EEEEcc-CCccCCchhhh
Q 012165          261 DGRVAAVKLE-DGS--TIDAD-TIVIGI-GAKPTVSPFER  295 (469)
Q Consensus       261 ~~~v~~v~~~-~g~--~i~~D-~vi~a~-G~~p~~~~~~~  295 (469)
                      ++++.+|... +++  .+.++ .||+|+ |+.+|.++++.
T Consensus       238 ~g~v~Gv~~~~~g~~~~i~A~~~VIlAtGG~~~n~~m~~~  277 (557)
T PRK07843        238 DGRVTGVHAAESGEPQLIRARRGVILASGGFEHNEQMRAK  277 (557)
T ss_pred             CCEEEEEEEEeCCcEEEEEeceeEEEccCCcCcCHHHHHH
Confidence            5677777654 443  47785 588865 56676665554

>PRK07846 mycothione reductase; Reviewed

Probab=98.26  E-value=3.5e-06  Score=85.82  Aligned_cols=96  Identities=25%  Similarity=0.331  Sum_probs=70.8

Q ss_pred             CCcEEEEcCcHHHHHHHHHHHHcCCCCCcEEEEcCCCCCCCCCCCCcccccCCCCCCCCCCCCCccccCCCCCCCCHhHH
Q 012165           51 NREFVIVGGGNAAGYAARTFVEHGMADGRLCIVSKEAYAPYERPALTKGYLFPLDKKPARLPGFHTCVGSGGERQTPEWY  130 (469)
Q Consensus        51 ~~~vvIIGgG~AGl~aA~~L~~~g~~~~~V~vie~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  130 (469)
                      .++++|||||+.|+.+|..|++.|.   +|+++++.+.+.   +.+        +.   ++            ......+
T Consensus       166 ~~~vvIIGgG~iG~E~A~~l~~~G~---~Vtli~~~~~ll---~~~--------d~---~~------------~~~l~~l  216 (451)
T PRK07846        166 PESLVIVGGGFIAAEFAHVFSALGV---RVTVVNRSGRLL---RHL--------DD---DI------------SERFTEL  216 (451)
T ss_pred             CCeEEEECCCHHHHHHHHHHHHcCC---eEEEEEcCCccc---ccc--------CH---HH------------HHHHHHH
Confidence            4799999999999999999999876   799999876431   000        00   00            0011123


Q ss_pred             HHCCcEEEeCCcEEEEeCCCc--EEEeCCCeEEEeccEEeccCCCCC
Q 012165          131 KEKGIEMIYQDPVTSIDIEKQ--TLITNSGKLLKYGSLIVATGCTAS  175 (469)
Q Consensus       131 ~~~~i~~~~~~~v~~id~~~~--~v~~~~g~~~~yd~lVlAtG~~~~  175 (469)
                      .+.++++++++++.+++.++.  .+.+.+|+++++|.|++|+|.+|.
T Consensus       217 ~~~~v~i~~~~~v~~i~~~~~~v~v~~~~g~~i~~D~vl~a~G~~pn  263 (451)
T PRK07846        217 ASKRWDVRLGRNVVGVSQDGSGVTLRLDDGSTVEADVLLVATGRVPN  263 (451)
T ss_pred             HhcCeEEEeCCEEEEEEEcCCEEEEEECCCcEeecCEEEEEECCccC
Confidence            356799999999999986543  466677888999999999999876

>PRK08132 FAD-dependent oxidoreductase; Provisional

Probab=98.25  E-value=3.9e-06  Score=87.84  Aligned_cols=37  Identities=16%  Similarity=0.319  Sum_probs=33.7

Q ss_pred             CCCCcEEEEcCcHHHHHHHHHHHHcCCCCCcEEEEcCCCC
Q 012165           49 NENREFVIVGGGNAAGYAARTFVEHGMADGRLCIVSKEAY   88 (469)
Q Consensus        49 ~~~~~vvIIGgG~AGl~aA~~L~~~g~~~~~V~vie~~~~   88 (469)
                      ..++||+|||||++|+++|..|+++|+   +|+|||+.+.
T Consensus        21 ~~~~dVlIVGaGpaGl~lA~~L~~~G~---~v~viE~~~~   57 (547)
T PRK08132         21 PARHPVVVVGAGPVGLALAIDLAQQGV---PVVLLDDDDT   57 (547)
T ss_pred             CCcCCEEEECCCHHHHHHHHHHHhCCC---cEEEEeCCCC
Confidence            466899999999999999999999988   7999999874

>PRK06370 mercuric reductase; Validated

Probab=98.23  E-value=4.3e-06  Score=85.73  Aligned_cols=98  Identities=16%  Similarity=0.282  Sum_probs=72.1

Q ss_pred             CCcEEEEcCcHHHHHHHHHHHHcCCCCCcEEEEcCCCCCCCCCCCCcccccCCCCCCCCCCCCCccccCCCCCCCCHhHH
Q 012165           51 NREFVIVGGGNAAGYAARTFVEHGMADGRLCIVSKEAYAPYERPALTKGYLFPLDKKPARLPGFHTCVGSGGERQTPEWY  130 (469)
Q Consensus        51 ~~~vvIIGgG~AGl~aA~~L~~~g~~~~~V~vie~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  130 (469)
                      .++++|||||+.|+.+|..|++.|.   +|+++++.+...   +..        ..   .+           .....+.+
T Consensus       171 ~~~vvVIGgG~~g~E~A~~l~~~G~---~Vtli~~~~~~l---~~~--------~~---~~-----------~~~l~~~l  222 (463)
T PRK06370        171 PEHLVIIGGGYIGLEFAQMFRRFGS---EVTVIERGPRLL---PRE--------DE---DV-----------AAAVREIL  222 (463)
T ss_pred             CCEEEEECCCHHHHHHHHHHHHcCC---eEEEEEcCCCCC---ccc--------CH---HH-----------HHHHHHHH
Confidence            4799999999999999999999886   799999876431   000        00   00           11234567


Q ss_pred             HHCCcEEEeCCcEEEEeCCCc--EEEe---CCCeEEEeccEEeccCCCCCc
Q 012165          131 KEKGIEMIYQDPVTSIDIEKQ--TLIT---NSGKLLKYGSLIVATGCTASR  176 (469)
Q Consensus       131 ~~~~i~~~~~~~v~~id~~~~--~v~~---~~g~~~~yd~lVlAtG~~~~~  176 (469)
                      ++.|++++.+++|.+++.++.  .+.+   .++.++++|.||+|+|.+|..
T Consensus       223 ~~~GV~i~~~~~V~~i~~~~~~~~v~~~~~~~~~~i~~D~Vi~A~G~~pn~  273 (463)
T PRK06370        223 EREGIDVRLNAECIRVERDGDGIAVGLDCNGGAPEITGSHILVAVGRVPNT  273 (463)
T ss_pred             HhCCCEEEeCCEEEEEEEcCCEEEEEEEeCCCceEEEeCEEEECcCCCcCC
Confidence            889999999999999986543  3333   234579999999999998863

>TIGR02023 BchP-ChlP geranylgeranyl reductase

Probab=98.23  E-value=3.9e-06  Score=83.94  Aligned_cols=32  Identities=22%  Similarity=0.526  Sum_probs=30.4

Q ss_pred             CcEEEEcCcHHHHHHHHHHHHcCCCCCcEEEEcCC
Q 012165           52 REFVIVGGGNAAGYAARTFVEHGMADGRLCIVSKE   86 (469)
Q Consensus        52 ~~vvIIGgG~AGl~aA~~L~~~g~~~~~V~vie~~   86 (469)
                      +||+||||||||+++|..|++.|+   +|+|+|+.
T Consensus         1 yDVvIVGaGpAG~~aA~~La~~G~---~V~l~E~~   32 (388)
T TIGR02023         1 YDVAVIGGGPSGATAAETLARAGI---ETILLERA   32 (388)
T ss_pred             CeEEEECCCHHHHHHHHHHHhCCC---cEEEEECC
Confidence            689999999999999999999988   79999997

This model represents a group of geranylgeranyl reductases specific for the biosyntheses of bacteriochlorophyll and chlorophyll. It is unclear whether the processes of isoprenoid ligation to the chlorin ring and reduction of the geranylgeranyl chain to a phytyl chain are necessarily ordered the same way in all species (see introduction to ).

>PTZ00363 rab-GDP dissociation inhibitor; Provisional

Probab=98.23  E-value=3.8e-05  Score=77.42  Aligned_cols=55  Identities=16%  Similarity=0.325  Sum_probs=46.5

Q ss_pred             eeHHHHHHcCcEEEcCCeEEEEEeCCCCcEEEEEcCCCCEEeCCEEEEccCCccC
Q 012165          235 RYEQLYQQNGVKFVKGASIKNLEAGSDGRVAAVKLEDGSTIDADTIVIGIGAKPT  289 (469)
Q Consensus       235 ~~~~~l~~~gV~~~~~~~v~~i~~~~~~~v~~v~~~~g~~i~~D~vi~a~G~~p~  289 (469)
                      .+.+.++..|.++++++.|++|..++++++.+|++++|+++.|+.||......|.
T Consensus       237 al~r~~a~~Gg~~~L~~~V~~I~~~~~g~~~~V~~~~Ge~i~a~~VV~~~s~~p~  291 (443)
T PTZ00363        237 AFSRLCAIYGGTYMLNTPVDEVVFDENGKVCGVKSEGGEVAKCKLVICDPSYFPD  291 (443)
T ss_pred             HHHHHHHHcCcEEEcCCeEEEEEEcCCCeEEEEEECCCcEEECCEEEECcccccc
Confidence            3445567889999999999999876567777899999999999999998888776

>TIGR01989 COQ6 Ubiquinone biosynthesis mono0xygenase COQ6

Probab=98.23  E-value=3.4e-06  Score=85.78  Aligned_cols=41  Identities=20%  Similarity=0.308  Sum_probs=34.0

Q ss_pred             CcEEEeCCcEEEEeC---------CCcEEEeCCCeEEEeccEEeccCCCC
Q 012165          134 GIEMIYQDPVTSIDI---------EKQTLITNSGKLLKYGSLIVATGCTA  174 (469)
Q Consensus       134 ~i~~~~~~~v~~id~---------~~~~v~~~~g~~~~yd~lVlAtG~~~  174 (469)
                      +++++.+++|.+++.         +..+|++.+|+++++|.||-|-|...
T Consensus       134 ~v~i~~~~~v~~i~~~~~~~~~~~~~v~v~~~~g~~i~a~llVgADG~~S  183 (437)
T TIGR01989       134 NVKILNPARLISVTIPSKYPNDNSNWVHITLSDGQVLYTKLLIGADGSNS  183 (437)
T ss_pred             CeEEecCCeeEEEEeccccccCCCCceEEEEcCCCEEEeeEEEEecCCCC
Confidence            489999999999963         22467888999999999999999764

This model represents the monooxygenase responsible for the 4-hydroxylateion of the phenol ring in the aerobic biosynthesis of ubiquinone

>TIGR03169 Nterm_to_SelD pyridine nucleotide-disulfide oxidoreductase family protein

Probab=98.23  E-value=5.5e-06  Score=82.18  Aligned_cols=96  Identities=25%  Similarity=0.416  Sum_probs=69.6

Q ss_pred             CCcEEEEcCcHHHHHHHHHHHHc----CCCCCcEEEEcCCCCCCCCCCCCcccccCCCCCCCCCCCCCccccCCCCCCCC
Q 012165           51 NREFVIVGGGNAAGYAARTFVEH----GMADGRLCIVSKEAYAPYERPALTKGYLFPLDKKPARLPGFHTCVGSGGERQT  126 (469)
Q Consensus        51 ~~~vvIIGgG~AGl~aA~~L~~~----g~~~~~V~vie~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  126 (469)
                      .++|+|||+|++|+.+|..|++.    |. ..+|+|+..+...    +.+        ..   .+           ....
T Consensus       145 ~~~vvVvG~G~~g~E~A~~l~~~~~~~g~-~~~V~li~~~~~l----~~~--------~~---~~-----------~~~~  197 (364)
T TIGR03169       145 TKRLAVVGGGAAGVEIALALRRRLPKRGL-RGQVTLIAGASLL----PGF--------PA---KV-----------RRLV  197 (364)
T ss_pred             CceEEEECCCHHHHHHHHHHHHHHHhcCC-CceEEEEeCCccc----ccC--------CH---HH-----------HHHH
Confidence            46899999999999999999853    32 3479998322111    000        00   00           1234


Q ss_pred             HhHHHHCCcEEEeCCcEEEEeCCCcEEEeCCCeEEEeccEEeccCCCCC
Q 012165          127 PEWYKEKGIEMIYQDPVTSIDIEKQTLITNSGKLLKYGSLIVATGCTAS  175 (469)
Q Consensus       127 ~~~~~~~~i~~~~~~~v~~id~~~~~v~~~~g~~~~yd~lVlAtG~~~~  175 (469)
                      .+.+++.+|+++.++++..++.+  .+.+.+|+++++|.+|+|+|..|.
T Consensus       198 ~~~l~~~gV~v~~~~~v~~i~~~--~v~~~~g~~i~~D~vi~a~G~~p~  244 (364)
T TIGR03169       198 LRLLARRGIEVHEGAPVTRGPDG--ALILADGRTLPADAILWATGARAP  244 (364)
T ss_pred             HHHHHHCCCEEEeCCeeEEEcCC--eEEeCCCCEEecCEEEEccCCChh
Confidence            56788999999999999988754  688888889999999999997753

Members of this protein family include N-terminal sequence regions of (probable) bifunctional proteins whose C-terminal sequences are SelD, or selenide,water dikinase, the selenium donor protein necessary for selenium incorporation into protein (as selenocysteine), tRNA (as 2-selenouridine), or both. However, some members of this family occur in species that do not show selenium incorporation, and the function of this protein family is unknown.

>PRK07818 dihydrolipoamide dehydrogenase; Reviewed

Probab=98.22  E-value=4.4e-06  Score=85.68  Aligned_cols=97  Identities=23%  Similarity=0.321  Sum_probs=71.6

Q ss_pred             CCcEEEEcCcHHHHHHHHHHHHcCCCCCcEEEEcCCCCCCCCCCCCcccccCCCCCCCCCCCCCccccCCCCCCCCHhHH
Q 012165           51 NREFVIVGGGNAAGYAARTFVEHGMADGRLCIVSKEAYAPYERPALTKGYLFPLDKKPARLPGFHTCVGSGGERQTPEWY  130 (469)
Q Consensus        51 ~~~vvIIGgG~AGl~aA~~L~~~g~~~~~V~vie~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  130 (469)
                      .++++|||||+.|+.+|..|++.|.   +|+|++..+...   |..        +.   .+           .....+.+
T Consensus       172 ~~~vvVIGgG~ig~E~A~~l~~~G~---~Vtlv~~~~~~l---~~~--------d~---~~-----------~~~l~~~l  223 (466)
T PRK07818        172 PKSIVIAGAGAIGMEFAYVLKNYGV---DVTIVEFLDRAL---PNE--------DA---EV-----------SKEIAKQY  223 (466)
T ss_pred             CCeEEEECCcHHHHHHHHHHHHcCC---eEEEEecCCCcC---Ccc--------CH---HH-----------HHHHHHHH
Confidence            4799999999999999999999986   799998655320   000        00   00           12345677


Q ss_pred             HHCCcEEEeCCcEEEEeCCCcE--EEeC--CC--eEEEeccEEeccCCCCC
Q 012165          131 KEKGIEMIYQDPVTSIDIEKQT--LITN--SG--KLLKYGSLIVATGCTAS  175 (469)
Q Consensus       131 ~~~~i~~~~~~~v~~id~~~~~--v~~~--~g--~~~~yd~lVlAtG~~~~  175 (469)
                      ++.|++++.+++|..++.++..  +.+.  +|  +++++|.|++|+|.+|.
T Consensus       224 ~~~gV~i~~~~~v~~i~~~~~~~~v~~~~~~g~~~~i~~D~vi~a~G~~pn  274 (466)
T PRK07818        224 KKLGVKILTGTKVESIDDNGSKVTVTVSKKDGKAQELEADKVLQAIGFAPR  274 (466)
T ss_pred             HHCCCEEEECCEEEEEEEeCCeEEEEEEecCCCeEEEEeCEEEECcCcccC
Confidence            8899999999999999765543  3333  55  46999999999998876

>PLN02612 phytoene desaturase

Probab=98.22  E-value=1.8e-05  Score=82.94  Aligned_cols=52  Identities=25%  Similarity=0.341  Sum_probs=43.4

Q ss_pred             eeHHHHHHcCcEEEcCCeEEEEEeCCCCcEEEEEcCCCCEEeCCEEEEccCC
Q 012165          235 RYEQLYQQNGVKFVKGASIKNLEAGSDGRVAAVKLEDGSTIDADTIVIGIGA  286 (469)
Q Consensus       235 ~~~~~l~~~gV~~~~~~~v~~i~~~~~~~v~~v~~~~g~~i~~D~vi~a~G~  286 (469)
                      .+.+.+++.|.++++++.|++|+.++++.+.++.+.+|+++.+|.||++++.
T Consensus       313 ~l~~~l~~~G~~I~l~~~V~~I~~~~~g~v~~v~~~~G~~~~ad~VI~a~p~  364 (567)
T PLN02612        313 PIVDHFQSLGGEVRLNSRIKKIELNDDGTVKHFLLTNGSVVEGDVYVSATPV  364 (567)
T ss_pred             HHHHHHHhcCCEEEeCCeeeEEEECCCCcEEEEEECCCcEEECCEEEECCCH
Confidence            3445666789999999999999876677676788889999999999999763

>COG1252 Ndh NADH dehydrogenase, FAD-containing subunit [Energy production and conversion]

Probab=98.22  E-value=2e-06  Score=84.37  Aligned_cols=98  Identities=22%  Similarity=0.330  Sum_probs=72.8

Q ss_pred             CCcEEEEcCcHHHHHHHHHHHHcCC----------CCCcEEEEcCCCCCCCCCCCCcccccCCCCCCCCCCCCCccccCC
Q 012165           51 NREFVIVGGGNAAGYAARTFVEHGM----------ADGRLCIVSKEAYAPYERPALTKGYLFPLDKKPARLPGFHTCVGS  120 (469)
Q Consensus        51 ~~~vvIIGgG~AGl~aA~~L~~~g~----------~~~~V~vie~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~  120 (469)
                      ..+++|||||+.|+..|-+|++.-.          .+.+|+|||..+...   |.++.           ++         
T Consensus       155 ~lti~IvGgG~TGVElAgeL~~~~~~l~~~~~~~~~~~~V~LVea~p~IL---p~~~~-----------~l---------  211 (405)
T COG1252         155 LLTIVIVGGGPTGVELAGELAERLHRLLKKFRVDPSELRVILVEAGPRIL---PMFPP-----------KL---------  211 (405)
T ss_pred             eeEEEEECCChhHHHHHHHHHHHHHHHhhhhcCCccccEEEEEccCchhc---cCCCH-----------HH---------
Confidence            3479999999999999999876422          023789999876531   11111           11         


Q ss_pred             CCCCCCHhHHHHCCcEEEeCCcEEEEeCCCcEEEeCCCe-EEEeccEEeccCCCCC
Q 012165          121 GGERQTPEWYKEKGIEMIYQDPVTSIDIEKQTLITNSGK-LLKYGSLIVATGCTAS  175 (469)
Q Consensus       121 ~~~~~~~~~~~~~~i~~~~~~~v~~id~~~~~v~~~~g~-~~~yd~lVlAtG~~~~  175 (469)
                        .....+++++.||++++++.|++++++.  |++++|. +++++.+|.|+|.++.
T Consensus       212 --~~~a~~~L~~~GV~v~l~~~Vt~v~~~~--v~~~~g~~~I~~~tvvWaaGv~a~  263 (405)
T COG1252         212 --SKYAERALEKLGVEVLLGTPVTEVTPDG--VTLKDGEEEIPADTVVWAAGVRAS  263 (405)
T ss_pred             --HHHHHHHHHHCCCEEEcCCceEEECCCc--EEEccCCeeEecCEEEEcCCCcCC
Confidence              1235678899999999999999998765  6777777 4999999999998864

>TIGR01421 gluta_reduc_1 glutathione-disulfide reductase, animal/bacterial

Probab=98.22  E-value=4.5e-06  Score=85.07  Aligned_cols=98  Identities=18%  Similarity=0.216  Sum_probs=73.4

Q ss_pred             CCcEEEEcCcHHHHHHHHHHHHcCCCCCcEEEEcCCCCCCCCCCCCcccccCCCCCCCCCCCCCccccCCCCCCCCHhHH
Q 012165           51 NREFVIVGGGNAAGYAARTFVEHGMADGRLCIVSKEAYAPYERPALTKGYLFPLDKKPARLPGFHTCVGSGGERQTPEWY  130 (469)
Q Consensus        51 ~~~vvIIGgG~AGl~aA~~L~~~g~~~~~V~vie~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  130 (469)
                      .++++|||||+.|+.+|..|++.|.   +|++++..+...   +.+.        ..   +           .....+.+
T Consensus       166 ~~~vvIIGgG~iG~E~A~~l~~~g~---~Vtli~~~~~il---~~~d--------~~---~-----------~~~~~~~l  217 (450)
T TIGR01421       166 PKRVVIVGAGYIAVELAGVLHGLGS---ETHLVIRHERVL---RSFD--------SM---I-----------SETITEEY  217 (450)
T ss_pred             CCeEEEECCCHHHHHHHHHHHHcCC---cEEEEecCCCCC---cccC--------HH---H-----------HHHHHHHH
Confidence            4799999999999999999999886   799999775421   0000        00   0           11245667


Q ss_pred             HHCCcEEEeCCcEEEEeCCC---cEEEeCCC-eEEEeccEEeccCCCCCc
Q 012165          131 KEKGIEMIYQDPVTSIDIEK---QTLITNSG-KLLKYGSLIVATGCTASR  176 (469)
Q Consensus       131 ~~~~i~~~~~~~v~~id~~~---~~v~~~~g-~~~~yd~lVlAtG~~~~~  176 (469)
                      ++.||+++.++.+..++.+.   ..+.++++ +.+++|.+++|+|.+|..
T Consensus       218 ~~~gI~i~~~~~v~~i~~~~~~~~~v~~~~g~~~i~~D~vi~a~G~~pn~  267 (450)
T TIGR01421       218 EKEGINVHKLSKPVKVEKTVEGKLVIHFEDGKSIDDVDELIWAIGRKPNT  267 (450)
T ss_pred             HHcCCEEEcCCEEEEEEEeCCceEEEEECCCcEEEEcCEEEEeeCCCcCc
Confidence            88999999999999997542   24666677 579999999999988763

The tripeptide glutathione is an important reductant, e.g., for maintaining the cellular thiol/disulfide status and for protecting against reactive oxygen species such as hydrogen peroxide. Glutathione-disulfide reductase regenerates reduced glutathione from oxidized glutathione (glutathione disulfide) + NADPH. This model represents one of two closely related subfamilies of glutathione-disulfide reductase. Both are closely related to trypanothione reductase, and separate models are built so each of the three can describe proteins with conserved function. This model describes glutathione-disulfide reductases of animals, yeast, and a number of animal-resident bacteria.

>PRK06996 hypothetical protein; Provisional

Probab=98.21  E-value=4.2e-06  Score=84.07  Aligned_cols=126  Identities=13%  Similarity=0.103  Sum_probs=71.4

Q ss_pred             CCCCCCcEEEEcCcHHHHHHHHHHHHcCC-CCCcEEEEcCCCCCC---CCC--------------CCCcccccCCCCCC-
Q 012165           47 FANENREFVIVGGGNAAGYAARTFVEHGM-ADGRLCIVSKEAYAP---YER--------------PALTKGYLFPLDKK-  107 (469)
Q Consensus        47 ~~~~~~~vvIIGgG~AGl~aA~~L~~~g~-~~~~V~vie~~~~~~---~~~--------------~~l~~~~~~~~~~~-  107 (469)
                      |..+.+||+||||||+|+++|..|++.|. ...+|+|+|+.+...   ..|              -.+......+.... 
T Consensus         7 ~~~~~~dv~IvGgGpaG~~~A~~L~~~g~~~g~~v~l~e~~~~~~~~~~~r~~~l~~~~~~~L~~lg~~~~~~~~~~~~~   86 (398)
T PRK06996          7 MAAPDFDIAIVGAGPVGLALAGWLARRSATRALSIALIDAREPAASANDPRAIALSHGSRVLLETLGAWPADATPIEHIH   86 (398)
T ss_pred             ccCCCCCEEEECcCHHHHHHHHHHhcCCCcCCceEEEecCCCCCcCCCCceEEEecHHHHHHHHhCCCchhcCCcccEEE
Confidence            56677899999999999999999999873 124799999975321   100              00000000000000 


Q ss_pred             ----------CCC-----CCCCccccC-CCCCCCCHhHHHHCCcEEEeCCcEEEEeCCCc--EEEeCCC---eEEEeccE
Q 012165          108 ----------PAR-----LPGFHTCVG-SGGERQTPEWYKEKGIEMIYQDPVTSIDIEKQ--TLITNSG---KLLKYGSL  166 (469)
Q Consensus       108 ----------~~~-----~~~~~~~~~-~~~~~~~~~~~~~~~i~~~~~~~v~~id~~~~--~v~~~~g---~~~~yd~l  166 (469)
                                ...     .+..-..+. ......+.+.+.+.+++++.+++++.++....  ++++.++   +++++|.|
T Consensus        87 ~~~~~~~g~~~~~~~~~~~~~~g~~v~r~~l~~~L~~~~~~~g~~~~~~~~v~~~~~~~~~v~v~~~~~~g~~~i~a~lv  166 (398)
T PRK06996         87 VSQRGHFGRTLIDRDDHDVPALGYVVRYGSLVAALARAVRGTPVRWLTSTTAHAPAQDADGVTLALGTPQGARTLRARIA  166 (398)
T ss_pred             EecCCCCceEEecccccCCCcCEEEEEhHHHHHHHHHHHHhCCCEEEcCCeeeeeeecCCeEEEEECCCCcceEEeeeEE
Confidence                      000     000000000 00011122334556899999999988865544  4555544   57999999


Q ss_pred             EeccCC
Q 012165          167 IVATGC  172 (469)
Q Consensus       167 VlAtG~  172 (469)
                      |-|.|.
T Consensus       167 IgADG~  172 (398)
T PRK06996        167 VQAEGG  172 (398)
T ss_pred             EECCCC
Confidence            999994

>TIGR02053 MerA mercuric reductase

Probab=98.21  E-value=4.4e-06  Score=85.68  Aligned_cols=98  Identities=19%  Similarity=0.337  Sum_probs=71.8

Q ss_pred             CCcEEEEcCcHHHHHHHHHHHHcCCCCCcEEEEcCCCCCCCCCCCCcccccCCCCCCCCCCCCCccccCCCCCCCCHhHH
Q 012165           51 NREFVIVGGGNAAGYAARTFVEHGMADGRLCIVSKEAYAPYERPALTKGYLFPLDKKPARLPGFHTCVGSGGERQTPEWY  130 (469)
Q Consensus        51 ~~~vvIIGgG~AGl~aA~~L~~~g~~~~~V~vie~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  130 (469)
                      .++++|||+|+.|+.+|..|++.|.   +|+++++.+.+.   |..        +.   .+           .....+.+
T Consensus       166 ~~~vvIIGgG~~g~E~A~~l~~~g~---~Vtli~~~~~~l---~~~--------d~---~~-----------~~~l~~~l  217 (463)
T TIGR02053       166 PESLAVIGGGAIGVELAQAFARLGS---EVTILQRSDRLL---PRE--------EP---EI-----------SAAVEEAL  217 (463)
T ss_pred             CCeEEEECCCHHHHHHHHHHHHcCC---cEEEEEcCCcCC---Ccc--------CH---HH-----------HHHHHHHH
Confidence            4789999999999999999999986   799999875421   000        00   00           11234567


Q ss_pred             HHCCcEEEeCCcEEEEeCCCc--EEEeC---CCeEEEeccEEeccCCCCCc
Q 012165          131 KEKGIEMIYQDPVTSIDIEKQ--TLITN---SGKLLKYGSLIVATGCTASR  176 (469)
Q Consensus       131 ~~~~i~~~~~~~v~~id~~~~--~v~~~---~g~~~~yd~lVlAtG~~~~~  176 (469)
                      ++.|++++.+++|..++.++.  .+++.   +++++++|.+++|+|.+|..
T Consensus       218 ~~~gV~i~~~~~V~~i~~~~~~~~v~~~~~~~~~~i~~D~ViiA~G~~p~~  268 (463)
T TIGR02053       218 AEEGIEVVTSAQVKAVSVRGGGKIITVEKPGGQGEVEADELLVATGRRPNT  268 (463)
T ss_pred             HHcCCEEEcCcEEEEEEEcCCEEEEEEEeCCCceEEEeCEEEEeECCCcCC
Confidence            888999999988999976543  34443   23579999999999998763

This model represents the mercuric reductase found in the mer operon for the detoxification of mercury compounds. MerA is a FAD-containing flavoprotein which reduces Hg(II) to Hg(0) utilizing NADPH.

>PRK07845 flavoprotein disulfide reductase; Reviewed

Probab=98.20  E-value=5e-06  Score=85.20  Aligned_cols=98  Identities=16%  Similarity=0.322  Sum_probs=73.5

Q ss_pred             CCcEEEEcCcHHHHHHHHHHHHcCCCCCcEEEEcCCCCCCCCCCCCcccccCCCCCCCCCCCCCccccCCCCCCCCHhHH
Q 012165           51 NREFVIVGGGNAAGYAARTFVEHGMADGRLCIVSKEAYAPYERPALTKGYLFPLDKKPARLPGFHTCVGSGGERQTPEWY  130 (469)
Q Consensus        51 ~~~vvIIGgG~AGl~aA~~L~~~g~~~~~V~vie~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  130 (469)
                      .++++|||+|..|+.+|..|++.|.   +|++++..+..           +...+...              .....+.+
T Consensus       177 ~~~vvVIGgG~ig~E~A~~l~~~g~---~Vtli~~~~~~-----------l~~~d~~~--------------~~~l~~~L  228 (466)
T PRK07845        177 PEHLIVVGSGVTGAEFASAYTELGV---KVTLVSSRDRV-----------LPGEDADA--------------AEVLEEVF  228 (466)
T ss_pred             CCeEEEECCCHHHHHHHHHHHHcCC---eEEEEEcCCcC-----------CCCCCHHH--------------HHHHHHHH
Confidence            4689999999999999999999876   89999976542           10000000              01235667


Q ss_pred             HHCCcEEEeCCcEEEEeCCCc--EEEeCCCeEEEeccEEeccCCCCCc
Q 012165          131 KEKGIEMIYQDPVTSIDIEKQ--TLITNSGKLLKYGSLIVATGCTASR  176 (469)
Q Consensus       131 ~~~~i~~~~~~~v~~id~~~~--~v~~~~g~~~~yd~lVlAtG~~~~~  176 (469)
                      ++.||+++.++++.+++....  .+.+.+|+++++|.+++|+|.+|..
T Consensus       229 ~~~gV~i~~~~~v~~v~~~~~~~~v~~~~g~~l~~D~vl~a~G~~pn~  276 (466)
T PRK07845        229 ARRGMTVLKRSRAESVERTGDGVVVTLTDGRTVEGSHALMAVGSVPNT  276 (466)
T ss_pred             HHCCcEEEcCCEEEEEEEeCCEEEEEECCCcEEEecEEEEeecCCcCC
Confidence            889999999999999964333  4566788889999999999988764

>PRK12409 D-amino acid dehydrogenase small subunit; Provisional

Probab=98.20  E-value=2e-05  Score=79.46  Aligned_cols=35  Identities=17%  Similarity=0.440  Sum_probs=32.2

Q ss_pred             CcEEEEcCcHHHHHHHHHHHHcCCCCCcEEEEcCCCCC
Q 012165           52 REFVIVGGGNAAGYAARTFVEHGMADGRLCIVSKEAYA   89 (469)
Q Consensus        52 ~~vvIIGgG~AGl~aA~~L~~~g~~~~~V~vie~~~~~   89 (469)
                      +||+|||||+.|+++|++|++.|.   +|+|+|+++..
T Consensus         2 ~~vvIIGaG~~G~~~A~~La~~g~---~V~vle~~~~~   36 (410)
T PRK12409          2 SHIAVIGAGITGVTTAYALAQRGY---QVTVFDRHRYA   36 (410)
T ss_pred             CEEEEECCCHHHHHHHHHHHHCCC---eEEEEeCCCCC
Confidence            699999999999999999999986   79999998753

>PTZ00383 malate:quinone oxidoreductase; Provisional

Probab=98.20  E-value=1.4e-06  Score=89.02  Aligned_cols=59  Identities=14%  Similarity=0.232  Sum_probs=43.2

Q ss_pred             HHHHH----cC--cEEEcCCeEEEEEeCCCCcEEEEEcCCCCEEeCCEEEEccCCccCCchhhhcCCc
Q 012165          238 QLYQQ----NG--VKFVKGASIKNLEAGSDGRVAAVKLEDGSTIDADTIVIGIGAKPTVSPFERVGLN  299 (469)
Q Consensus       238 ~~l~~----~g--V~~~~~~~v~~i~~~~~~~v~~v~~~~g~~i~~D~vi~a~G~~p~~~~~~~~gl~  299 (469)
                      +.+++    .|  ++++++++|+.++..+ +....|.+.+| ++.+|.||+|+|.... .+++.+|+.
T Consensus       219 ~~a~~~~~~~G~~v~i~~~t~V~~I~~~~-~~~~~V~T~~G-~i~A~~VVvaAG~~S~-~La~~~Gi~  283 (497)
T PTZ00383        219 KHARRDALVPGKKISINLNTEVLNIERSN-DSLYKIHTNRG-EIRARFVVVSACGYSL-LFAQKMGYG  283 (497)
T ss_pred             HHHHhhhhhcCCCEEEEeCCEEEEEEecC-CCeEEEEECCC-EEEeCEEEECcChhHH-HHHHHhCCC
Confidence            44555    56  8899999999998643 33446777777 6999999999997654 456666653

>PRK06327 dihydrolipoamide dehydrogenase; Validated

Probab=98.19  E-value=5.2e-06  Score=85.32  Aligned_cols=98  Identities=14%  Similarity=0.280  Sum_probs=71.6

Q ss_pred             CCCcEEEEcCcHHHHHHHHHHHHcCCCCCcEEEEcCCCCCCCCCCCCcccccCCCCCCCCCCCCCccccCCCCCCCCHhH
Q 012165           50 ENREFVIVGGGNAAGYAARTFVEHGMADGRLCIVSKEAYAPYERPALTKGYLFPLDKKPARLPGFHTCVGSGGERQTPEW  129 (469)
Q Consensus        50 ~~~~vvIIGgG~AGl~aA~~L~~~g~~~~~V~vie~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  129 (469)
                      ..++|+|||+|+.|+.+|..|++.|.   +|+++++.+.+.   +..        +.   .+           .....+.
T Consensus       182 ~~~~vvVvGgG~~g~E~A~~l~~~g~---~Vtli~~~~~~l---~~~--------d~---~~-----------~~~~~~~  233 (475)
T PRK06327        182 VPKKLAVIGAGVIGLELGSVWRRLGA---EVTILEALPAFL---AAA--------DE---QV-----------AKEAAKA  233 (475)
T ss_pred             cCCeEEEECCCHHHHHHHHHHHHcCC---eEEEEeCCCccC---CcC--------CH---HH-----------HHHHHHH
Confidence            34799999999999999999999876   799999876421   000        00   00           1123456


Q ss_pred             HHHCCcEEEeCCcEEEEeCCCc--EEEeCC--C--eEEEeccEEeccCCCCC
Q 012165          130 YKEKGIEMIYQDPVTSIDIEKQ--TLITNS--G--KLLKYGSLIVATGCTAS  175 (469)
Q Consensus       130 ~~~~~i~~~~~~~v~~id~~~~--~v~~~~--g--~~~~yd~lVlAtG~~~~  175 (469)
                      +++.|++++.+++|.+++.+..  .+.+.+  |  +++++|.|++|+|.+|.
T Consensus       234 l~~~gi~i~~~~~v~~i~~~~~~v~v~~~~~~g~~~~i~~D~vl~a~G~~p~  285 (475)
T PRK06327        234 FTKQGLDIHLGVKIGEIKTGGKGVSVAYTDADGEAQTLEVDKLIVSIGRVPN  285 (475)
T ss_pred             HHHcCcEEEeCcEEEEEEEcCCEEEEEEEeCCCceeEEEcCEEEEccCCccC
Confidence            7788999999999999986644  344333  3  46999999999999876

>TIGR02374 nitri_red_nirB nitrite reductase [NAD(P)H], large subunit

Probab=98.19  E-value=4.9e-06  Score=90.36  Aligned_cols=99  Identities=18%  Similarity=0.283  Sum_probs=75.0

Q ss_pred             CCCcEEEEcCcHHHHHHHHHHHHcCCCCCcEEEEcCCCCCCCCCCCCcccccCCCCCCCCCCCCCccccCCCCCCCCHhH
Q 012165           50 ENREFVIVGGGNAAGYAARTFVEHGMADGRLCIVSKEAYAPYERPALTKGYLFPLDKKPARLPGFHTCVGSGGERQTPEW  129 (469)
Q Consensus        50 ~~~~vvIIGgG~AGl~aA~~L~~~g~~~~~V~vie~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  129 (469)
                      ..++++|||||+.|+.+|..|++.|.   +|+|++..+..      ++. .+   +...              .....+.
T Consensus       139 ~~k~vvVVGgG~~GlE~A~~L~~~G~---~Vtvv~~~~~l------l~~-~l---d~~~--------------~~~l~~~  191 (785)
T TIGR02374       139 RFKKAAVIGGGLLGLEAAVGLQNLGM---DVSVIHHAPGL------MAK-QL---DQTA--------------GRLLQRE  191 (785)
T ss_pred             cCCeEEEECCCHHHHHHHHHHHhcCC---eEEEEccCCch------hhh-hc---CHHH--------------HHHHHHH
Confidence            34789999999999999999999987   79999876532      000 00   0000              0123566


Q ss_pred             HHHCCcEEEeCCcEEEEeCCCc--EEEeCCCeEEEeccEEeccCCCCC
Q 012165          130 YKEKGIEMIYQDPVTSIDIEKQ--TLITNSGKLLKYGSLIVATGCTAS  175 (469)
Q Consensus       130 ~~~~~i~~~~~~~v~~id~~~~--~v~~~~g~~~~yd~lVlAtG~~~~  175 (469)
                      +++.||++++++.+..+..+..  .|.+.+|+++++|.+|+|+|.+|.
T Consensus       192 l~~~GV~v~~~~~v~~i~~~~~~~~v~~~dG~~i~~D~Vi~a~G~~Pn  239 (785)
T TIGR02374       192 LEQKGLTFLLEKDTVEIVGATKADRIRFKDGSSLEADLIVMAAGIRPN  239 (785)
T ss_pred             HHHcCCEEEeCCceEEEEcCCceEEEEECCCCEEEcCEEEECCCCCcC
Confidence            7889999999999998876543  577889999999999999999876

>PF01494 FAD_binding_3: FAD binding domain; InterPro: IPR002938 Monooxygenases incorporate one hydroxyl group into substrates and are found in many metabolic pathways

Probab=98.18  E-value=5.8e-07  Score=88.45  Aligned_cols=35  Identities=26%  Similarity=0.390  Sum_probs=30.6

Q ss_pred             CcEEEEcCcHHHHHHHHHHHHcCCCCCcEEEEcCCCCC
Q 012165           52 REFVIVGGGNAAGYAARTFVEHGMADGRLCIVSKEAYA   89 (469)
Q Consensus        52 ~~vvIIGgG~AGl~aA~~L~~~g~~~~~V~vie~~~~~   89 (469)
                      +||+|||||+||+++|..|+++|+   +|+|+|+.+.+
T Consensus         2 ~dV~IvGaG~aGl~~A~~L~~~G~---~v~i~E~~~~~   36 (356)
T PF01494_consen    2 YDVAIVGAGPAGLAAALALARAGI---DVTIIERRPDP   36 (356)
T ss_dssp             EEEEEE--SHHHHHHHHHHHHTTC---EEEEEESSSSC
T ss_pred             ceEEEECCCHHHHHHHHHHHhccc---ccccchhcccc
Confidence            689999999999999999999998   79999998764

In this reaction, two atoms of dioxygen are reduced to one hydroxyl group and one H2O molecule by the concomitant oxidation of NAD(P)H []. P-hydroxybenzoate hydroxylase from Pseudomonas fluorescens contains this sequence motif (present in in flavoprotein hydroxylases) with a putative dual function in FAD and NADPH binding [].; PDB: 2Y6R_B 2XYO_C 2Y6Q_C 3P9U_D 2XDO_C 1FOH_D 1PN0_A 3IHG_C 2QA2_A 2VOU_C ....

>PRK08401 L-aspartate oxidase; Provisional

Probab=98.17  E-value=8.3e-06  Score=83.48  Aligned_cols=34  Identities=29%  Similarity=0.366  Sum_probs=31.1

Q ss_pred             CCcEEEEcCcHHHHHHHHHHHHcCCCCCcEEEEcCCC
Q 012165           51 NREFVIVGGGNAAGYAARTFVEHGMADGRLCIVSKEA   87 (469)
Q Consensus        51 ~~~vvIIGgG~AGl~aA~~L~~~g~~~~~V~vie~~~   87 (469)
                      ++||||||+|.||++||..+++.|.   +|+|+|+.+
T Consensus         1 ~~DVvVVGaG~AGl~AAi~aae~G~---~V~liek~~   34 (466)
T PRK08401          1 MMKVGIVGGGLAGLTAAISLAKKGF---DVTIIGPGI   34 (466)
T ss_pred             CCeEEEECccHHHHHHHHHHHHCCC---eEEEEeCCC
Confidence            3799999999999999999999886   799999974

>PRK01747 mnmC bifunctional tRNA (mnm(5)s(2)U34)-methyltransferase/FAD-dependent cmnm(5)s(2)U34 oxidoreductase; Reviewed

Probab=98.17  E-value=2.2e-05  Score=84.09  Aligned_cols=50  Identities=20%  Similarity=0.269  Sum_probs=38.7

Q ss_pred             HHHHHHcCcEEEcCCeEEEEEeCCCCcEEEEEcCCCCEEeCCEEEEccCCccC
Q 012165          237 EQLYQQNGVKFVKGASIKNLEAGSDGRVAAVKLEDGSTIDADTIVIGIGAKPT  289 (469)
Q Consensus       237 ~~~l~~~gV~~~~~~~v~~i~~~~~~~v~~v~~~~g~~i~~D~vi~a~G~~p~  289 (469)
                      .+.+++ |++++.++.|++++.. ++.+ .|.+.+|+.+.+|.||+|+|....
T Consensus       415 ~~~a~~-Gv~i~~~~~V~~i~~~-~~~~-~v~t~~g~~~~ad~VV~A~G~~s~  464 (662)
T PRK01747        415 LALAGQ-QLTIHFGHEVARLERE-DDGW-QLDFAGGTLASAPVVVLANGHDAA  464 (662)
T ss_pred             HHhccc-CcEEEeCCEeeEEEEe-CCEE-EEEECCCcEEECCEEEECCCCCcc
Confidence            344556 8999999999999864 3444 377788877899999999998654

>PRK08243 4-hydroxybenzoate 3-monooxygenase; Validated

Probab=98.16  E-value=7e-06  Score=82.29  Aligned_cols=35  Identities=14%  Similarity=0.292  Sum_probs=32.5

Q ss_pred             CCcEEEEcCcHHHHHHHHHHHHcCCCCCcEEEEcCCCC
Q 012165           51 NREFVIVGGGNAAGYAARTFVEHGMADGRLCIVSKEAY   88 (469)
Q Consensus        51 ~~~vvIIGgG~AGl~aA~~L~~~g~~~~~V~vie~~~~   88 (469)
                      ++||+|||||++|+++|..|++.|+   +|+|+|+.+.
T Consensus         2 ~~dV~IvGaGpaGl~~A~~L~~~G~---~v~v~E~~~~   36 (392)
T PRK08243          2 RTQVAIIGAGPAGLLLGQLLHLAGI---DSVVLERRSR   36 (392)
T ss_pred             cceEEEECCCHHHHHHHHHHHhcCC---CEEEEEcCCc
Confidence            5799999999999999999999998   7999999874

>PLN02507 glutathione reductase

Probab=98.16  E-value=7e-06  Score=84.63  Aligned_cols=98  Identities=17%  Similarity=0.275  Sum_probs=73.3

Q ss_pred             CCcEEEEcCcHHHHHHHHHHHHcCCCCCcEEEEcCCCCCCCCCCCCcccccCCCCCCCCCCCCCccccCCCCCCCCHhHH
Q 012165           51 NREFVIVGGGNAAGYAARTFVEHGMADGRLCIVSKEAYAPYERPALTKGYLFPLDKKPARLPGFHTCVGSGGERQTPEWY  130 (469)
Q Consensus        51 ~~~vvIIGgG~AGl~aA~~L~~~g~~~~~V~vie~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  130 (469)
                      .++++|||||+.|+.+|..|++.|.   +|+|++..+.. .  +.+        +.   .+           .....+.+
T Consensus       203 ~k~vvVIGgG~ig~E~A~~l~~~G~---~Vtli~~~~~~-l--~~~--------d~---~~-----------~~~l~~~l  254 (499)
T PLN02507        203 PKRAVVLGGGYIAVEFASIWRGMGA---TVDLFFRKELP-L--RGF--------DD---EM-----------RAVVARNL  254 (499)
T ss_pred             CCeEEEECCcHHHHHHHHHHHHcCC---eEEEEEecCCc-C--ccc--------CH---HH-----------HHHHHHHH
Confidence            4789999999999999999999876   79999876532 0  000        00   00           11234567


Q ss_pred             HHCCcEEEeCCcEEEEeCCC--cEEEeCCCeEEEeccEEeccCCCCCc
Q 012165          131 KEKGIEMIYQDPVTSIDIEK--QTLITNSGKLLKYGSLIVATGCTASR  176 (469)
Q Consensus       131 ~~~~i~~~~~~~v~~id~~~--~~v~~~~g~~~~yd~lVlAtG~~~~~  176 (469)
                      ++.||+++.+++|.+++..+  ..+.+.+|+++++|.+++|+|.+|..
T Consensus       255 ~~~GI~i~~~~~V~~i~~~~~~~~v~~~~g~~i~~D~vl~a~G~~pn~  302 (499)
T PLN02507        255 EGRGINLHPRTNLTQLTKTEGGIKVITDHGEEFVADVVLFATGRAPNT  302 (499)
T ss_pred             HhCCCEEEeCCEEEEEEEeCCeEEEEECCCcEEEcCEEEEeecCCCCC
Confidence            88999999999999997543  34666778889999999999988763

>PTZ00318 NADH dehydrogenase-like protein; Provisional

Probab=98.15  E-value=7.8e-06  Score=82.72  Aligned_cols=97  Identities=14%  Similarity=0.292  Sum_probs=71.9

Q ss_pred             CcEEEEcCcHHHHHHHHHHHHcC-----------CCCCcEEEEcCCCCCCCCCCCCcccccCCCCCCCCCCCCCccccCC
Q 012165           52 REFVIVGGGNAAGYAARTFVEHG-----------MADGRLCIVSKEAYAPYERPALTKGYLFPLDKKPARLPGFHTCVGS  120 (469)
Q Consensus        52 ~~vvIIGgG~AGl~aA~~L~~~g-----------~~~~~V~vie~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~  120 (469)
                      .+++|||||+.|+..|..|+..-           .++.+|++|+..+...   +.+..           .+         
T Consensus       174 ~~vvVvGgG~~GvE~A~~l~~~~~~~~~~~~~~~~~~~~Vtlv~~~~~ll---~~~~~-----------~~---------  230 (424)
T PTZ00318        174 LHFVVVGGGPTGVEFAAELADFFRDDVRNLNPELVEECKVTVLEAGSEVL---GSFDQ-----------AL---------  230 (424)
T ss_pred             CEEEEECCCHHHHHHHHHHHHHHHHHHHhhhhcccccCEEEEEcCCCccc---ccCCH-----------HH---------
Confidence            48999999999999999987531           0134899999875421   00100           00         


Q ss_pred             CCCCCCHhHHHHCCcEEEeCCcEEEEeCCCcEEEeCCCeEEEeccEEeccCCCCC
Q 012165          121 GGERQTPEWYKEKGIEMIYQDPVTSIDIEKQTLITNSGKLLKYGSLIVATGCTAS  175 (469)
Q Consensus       121 ~~~~~~~~~~~~~~i~~~~~~~v~~id~~~~~v~~~~g~~~~yd~lVlAtG~~~~  175 (469)
                        .....+.+++.||+++.++++.+++.+  .|++++|+++++|.+|+|+|..|.
T Consensus       231 --~~~~~~~L~~~gV~v~~~~~v~~v~~~--~v~~~~g~~i~~d~vi~~~G~~~~  281 (424)
T PTZ00318        231 --RKYGQRRLRRLGVDIRTKTAVKEVLDK--EVVLKDGEVIPTGLVVWSTGVGPG  281 (424)
T ss_pred             --HHHHHHHHHHCCCEEEeCCeEEEEeCC--EEEECCCCEEEccEEEEccCCCCc
Confidence              123457788999999999999998754  578889999999999999997764

>PF12831 FAD_oxidored: FAD dependent oxidoreductase; PDB: 3ADA_A 1VRQ_A 1X31_A 3AD9_A 3AD8_A 3AD7_A 2GAG_A 2GAH_A

Probab=98.15  E-value=1.4e-06  Score=88.19  Aligned_cols=117  Identities=21%  Similarity=0.246  Sum_probs=30.0

Q ss_pred             cEEEEcCcHHHHHHHHHHHHcCCCCCcEEEEcCCCCCCCCC-----CCCcc-------------cccCCCCC---CC-CC
Q 012165           53 EFVIVGGGNAAGYAARTFVEHGMADGRLCIVSKEAYAPYER-----PALTK-------------GYLFPLDK---KP-AR  110 (469)
Q Consensus        53 ~vvIIGgG~AGl~aA~~L~~~g~~~~~V~vie~~~~~~~~~-----~~l~~-------------~~~~~~~~---~~-~~  110 (469)
                      ||||||||+||++||..+++.|.   +|+|||+.+.++...     ..+..             .+......   .. ..
T Consensus         1 DVVVvGgG~aG~~AAi~AAr~G~---~VlLiE~~~~lGG~~t~~~~~~~~~~~~~~~~~~gi~~e~~~~~~~~~~~~~~~   77 (428)
T PF12831_consen    1 DVVVVGGGPAGVAAAIAAARAGA---KVLLIEKGGFLGGMATSGGVSPFDGNHDEDQVIGGIFREFLNRLRARGGYPQED   77 (428)
T ss_dssp             EEEEE--SHHHHHHHHHHHHTTS----EEEE-SSSSSTGGGGGSSS-EETTEEHHHHHHHHHHHHHHHST----------
T ss_pred             CEEEECccHHHHHHHHHHHHCCC---EEEEEECCccCCCcceECCcCChhhcchhhccCCCHHHHHHHHHhhhccccccc
Confidence            79999999999999999999997   899999998764210     00000             00000000   00 00


Q ss_pred             CCCC---ccccCCCCCCCCHhHHHHCCcEEEeCCcEEEEeCCCc---EEEeCC---CeEEEeccEEeccCC
Q 012165          111 LPGF---HTCVGSGGERQTPEWYKEKGIEMIYQDPVTSIDIEKQ---TLITNS---GKLLKYGSLIVATGC  172 (469)
Q Consensus       111 ~~~~---~~~~~~~~~~~~~~~~~~~~i~~~~~~~v~~id~~~~---~v~~~~---g~~~~yd~lVlAtG~  172 (469)
                      ..++   ...........+.+++.+.|+++++++.+.++..++.   .|++.+   ..++.++.+|-|||-
T Consensus        78 ~~~~~~~~~~~~~~~~~~l~~~l~e~gv~v~~~t~v~~v~~~~~~i~~V~~~~~~g~~~i~A~~~IDaTG~  148 (428)
T PF12831_consen   78 RYGWVSNVPFDPEVFKAVLDEMLAEAGVEVLLGTRVVDVIRDGGRITGVIVETKSGRKEIRAKVFIDATGD  148 (428)
T ss_dssp             -----------------------------------------------------------------------
T ss_pred             ccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccc
Confidence            0000   0000111122345566788999999999999987764   344433   457999999999994

>PRK14989 nitrite reductase subunit NirD; Provisional

Probab=98.15  E-value=6.3e-06  Score=89.64  Aligned_cols=100  Identities=18%  Similarity=0.197  Sum_probs=75.2

Q ss_pred             CCCcEEEEcCcHHHHHHHHHHHHcCCCCCcEEEEcCCCCCCCCCCCCcccccCCCCCCCCCCCCCccccCCCCCCCCHhH
Q 012165           50 ENREFVIVGGGNAAGYAARTFVEHGMADGRLCIVSKEAYAPYERPALTKGYLFPLDKKPARLPGFHTCVGSGGERQTPEW  129 (469)
Q Consensus        50 ~~~~vvIIGgG~AGl~aA~~L~~~g~~~~~V~vie~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  129 (469)
                      ..++++|||||+.|+.+|..|++.|.   +|+|++..+...      +. .+   +...              .....+.
T Consensus       144 ~~k~vvVIGgG~iGlE~A~~L~~~G~---~VtvVe~~~~ll------~~-~l---d~~~--------------~~~l~~~  196 (847)
T PRK14989        144 RSKRGAVVGGGLLGLEAAGALKNLGV---ETHVIEFAPMLM------AE-QL---DQMG--------------GEQLRRK  196 (847)
T ss_pred             cCCeEEEECCCHHHHHHHHHHHHcCC---eEEEEeccccch------hh-hc---CHHH--------------HHHHHHH
Confidence            34689999999999999999999987   799998765420      00 00   0000              1124567


Q ss_pred             HHHCCcEEEeCCcEEEEeCCC----cEEEeCCCeEEEeccEEeccCCCCCc
Q 012165          130 YKEKGIEMIYQDPVTSIDIEK----QTLITNSGKLLKYGSLIVATGCTASR  176 (469)
Q Consensus       130 ~~~~~i~~~~~~~v~~id~~~----~~v~~~~g~~~~yd~lVlAtG~~~~~  176 (469)
                      +++.||+++++..+.++..++    ..+.+.+|+++++|.||+|+|.+|+.
T Consensus       197 L~~~GV~v~~~~~v~~I~~~~~~~~~~v~~~dG~~i~~D~Vv~A~G~rPn~  247 (847)
T PRK14989        197 IESMGVRVHTSKNTLEIVQEGVEARKTMRFADGSELEVDFIVFSTGIRPQD  247 (847)
T ss_pred             HHHCCCEEEcCCeEEEEEecCCCceEEEEECCCCEEEcCEEEECCCcccCc
Confidence            788999999999999996532    25678899999999999999998863

>TIGR01292 TRX_reduct thioredoxin-disulfide reductase

Probab=98.15  E-value=1.2e-05  Score=77.14  Aligned_cols=82  Identities=21%  Similarity=0.325  Sum_probs=65.2

Q ss_pred             eEEEEcCChHHHHHHHHHHhCCCeEe----------------------------------eeHHHHHHcCcEEEcCCeEE
Q 012165          209 KVVVVGGGYIGMEVAAAAVGWKLDTT----------------------------------RYEQLYQQNGVKFVKGASIK  254 (469)
Q Consensus       209 ~vvVvG~G~~g~e~A~~l~~~g~~v~----------------------------------~~~~~l~~~gV~~~~~~~v~  254 (469)
                      +++|||+|+.|+++|..|.+.|.+++                                  .+.+.+++.|+++++ .++.
T Consensus         2 dvvIIG~G~aGl~aA~~l~~~g~~v~lie~~~~gg~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~gv~~~~-~~v~   80 (300)
T TIGR01292         2 DVIIIGAGPAGLTAAIYAARANLKTLIIEGMEPGGQLTTTTEVENYPGFPEGISGPELMEKMKEQAVKFGAEIIY-EEVI   80 (300)
T ss_pred             cEEEECCCHHHHHHHHHHHHCCCCEEEEeccCCCcceeecccccccCCCCCCCChHHHHHHHHHHHHHcCCeEEE-EEEE
Confidence            58999999999999999999887766                                  124456778999998 7899


Q ss_pred             EEEeCCCCcEEEEEcCCCCEEeCCEEEEccCCccCCchh
Q 012165          255 NLEAGSDGRVAAVKLEDGSTIDADTIVIGIGAKPTVSPF  293 (469)
Q Consensus       255 ~i~~~~~~~v~~v~~~~g~~i~~D~vi~a~G~~p~~~~~  293 (469)
                      +++..+ +. ..+.+.+++++.+|.+|+|+|.+|+...+
T Consensus        81 ~v~~~~-~~-~~v~~~~~~~~~~d~liiAtG~~~~~~~i  117 (300)
T TIGR01292        81 KVDLSD-RP-FKVKTGDGKEYTAKAVIIATGASARKLGI  117 (300)
T ss_pred             EEEecC-Ce-eEEEeCCCCEEEeCEEEECCCCCcccCCC
Confidence            988642 22 24677788899999999999998875433

This model describes thioredoxin-disulfide reductase, a member of the pyridine nucleotide-disulphide oxidoreductases (PFAM:PF00070).

>TIGR02360 pbenz_hydroxyl 4-hydroxybenzoate 3-monooxygenase

Probab=98.15  E-value=5.9e-06  Score=82.67  Aligned_cols=35  Identities=14%  Similarity=0.335  Sum_probs=32.5

Q ss_pred             CCcEEEEcCcHHHHHHHHHHHHcCCCCCcEEEEcCCCC
Q 012165           51 NREFVIVGGGNAAGYAARTFVEHGMADGRLCIVSKEAY   88 (469)
Q Consensus        51 ~~~vvIIGgG~AGl~aA~~L~~~g~~~~~V~vie~~~~   88 (469)
                      .+||+|||||++|+++|..|++.|+   +|+|+|+.+.
T Consensus         2 ~~dV~IVGaG~aGl~~A~~L~~~G~---~v~viE~~~~   36 (390)
T TIGR02360         2 KTQVAIIGAGPSGLLLGQLLHKAGI---DNVILERQSR   36 (390)
T ss_pred             CceEEEECccHHHHHHHHHHHHCCC---CEEEEECCCC
Confidence            4799999999999999999999998   7999999874

Members of this family are the enzyme 4-hydroxybenzoate 3-monooxygenase, also called p-hydroxybenzoate hydroxylase. It converts 4-hydroxybenzoate + NADPH + molecular oxygen to protocatechuate + NADPH + water. It contains monooxygenase (pfam01360) and FAD binding (pfam01494) domains. Pathways that contain this enzyme include the protocatechuate 4,5-degradation pathway.

>TIGR01373 soxB sarcosine oxidase, beta subunit family, heterotetrameric form

Probab=98.14  E-value=2.1e-05  Score=79.21  Aligned_cols=52  Identities=19%  Similarity=0.397  Sum_probs=40.0

Q ss_pred             eHHHHHHcCcEEEcCCeEEEEEeCCCCcEEEEEcCCCCEEeCCEEEEccCCcc
Q 012165          236 YEQLYQQNGVKFVKGASIKNLEAGSDGRVAAVKLEDGSTIDADTIVIGIGAKP  288 (469)
Q Consensus       236 ~~~~l~~~gV~~~~~~~v~~i~~~~~~~v~~v~~~~g~~i~~D~vi~a~G~~p  288 (469)
                      +.+.+++.|++++.++.|++++..+++.+..|.+.+| .+.++.||+++|...
T Consensus       189 l~~~a~~~Gv~~~~~~~V~~i~~~~~~~~~~v~t~~g-~i~a~~vVvaagg~~  240 (407)
T TIGR01373       189 YARGADRRGVDIIQNCEVTGFIRRDGGRVIGVETTRG-FIGAKKVGVAVAGHS  240 (407)
T ss_pred             HHHHHHHCCCEEEeCCEEEEEEEcCCCcEEEEEeCCc-eEECCEEEECCChhh
Confidence            3456788999999999999997544456666787777 699999888877543

Sarcosine oxidase catalyzes the oxidative demethylation of sarcosine to glycine. The reaction converts tetrahydrofolate to 5,10-methylene-tetrahydrofolate. The enzyme is known in monomeric and heterotetrameric (alpha,beta,gamma,delta) forms.

>PRK06617 2-octaprenyl-6-methoxyphenyl hydroxylase; Validated

Probab=98.14  E-value=6.1e-06  Score=82.15  Aligned_cols=34  Identities=24%  Similarity=0.395  Sum_probs=31.1

Q ss_pred             CCcEEEEcCcHHHHHHHHHHHHcCCCCCcEEEEcCCC
Q 012165           51 NREFVIVGGGNAAGYAARTFVEHGMADGRLCIVSKEA   87 (469)
Q Consensus        51 ~~~vvIIGgG~AGl~aA~~L~~~g~~~~~V~vie~~~   87 (469)
                      +.||+|||||++|+++|..|++.|+   +|+|+|+.+
T Consensus         1 ~~dV~IvGgG~~Gl~~A~~L~~~G~---~v~l~E~~~   34 (374)
T PRK06617          1 MSNTVILGCGLSGMLTALSFAQKGI---KTTIFESKS   34 (374)
T ss_pred             CccEEEECCCHHHHHHHHHHHcCCC---eEEEecCCC
Confidence            4689999999999999999999998   799999863

>TIGR03219 salicylate_mono salicylate 1-monooxygenase

Probab=98.13  E-value=2e-05  Score=79.58  Aligned_cols=41  Identities=17%  Similarity=0.199  Sum_probs=32.8

Q ss_pred             CcEEEeCCcEEEEeCCCc--EEEeCCCeEEEeccEEeccCCCC
Q 012165          134 GIEMIYQDPVTSIDIEKQ--TLITNSGKLLKYGSLIVATGCTA  174 (469)
Q Consensus       134 ~i~~~~~~~v~~id~~~~--~v~~~~g~~~~yd~lVlAtG~~~  174 (469)
                      +..++++++|++++....  ++++.+|.++++|.||.|.|...
T Consensus       117 ~~~v~~~~~v~~i~~~~~~~~v~~~~g~~~~ad~vVgADG~~S  159 (414)
T TIGR03219       117 EGIASFGKRATQIEEQAEEVQVLFTDGTEYRCDLLIGADGIKS  159 (414)
T ss_pred             CceEEcCCEEEEEEecCCcEEEEEcCCCEEEeeEEEECCCccH
Confidence            456778899999976543  56778888899999999999764

Members of this protein family are salicylate 1-monooxygenase, also called salicylate hydroxylase. This enzyme converts salicylate to catechol, which is a common intermediate in the degradation of a number of aromatic compounds (phenol, toluene, benzoate, etc.). The gene for this protein may occur in catechol degradation genes, such as those of the meta-cleavage pathway.

>PRK06115 dihydrolipoamide dehydrogenase; Reviewed

Probab=98.13  E-value=8.8e-06  Score=83.36  Aligned_cols=98  Identities=15%  Similarity=0.223  Sum_probs=70.7

Q ss_pred             CCCcEEEEcCcHHHHHHHHHHHHcCCCCCcEEEEcCCCCCCCCCCCCcccccCCCCCCCCCCCCCccccCCCCCCCCHhH
Q 012165           50 ENREFVIVGGGNAAGYAARTFVEHGMADGRLCIVSKEAYAPYERPALTKGYLFPLDKKPARLPGFHTCVGSGGERQTPEW  129 (469)
Q Consensus        50 ~~~~vvIIGgG~AGl~aA~~L~~~g~~~~~V~vie~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  129 (469)
                      ..++++|||||+.|+.+|..|++.|.   +|++++..+...   +.+        +.   .+           .....+.
T Consensus       173 ~~~~vvIIGgG~ig~E~A~~l~~~G~---~Vtlie~~~~il---~~~--------d~---~~-----------~~~l~~~  224 (466)
T PRK06115        173 VPKHLVVIGAGVIGLELGSVWRRLGA---QVTVVEYLDRIC---PGT--------DT---ET-----------AKTLQKA  224 (466)
T ss_pred             CCCeEEEECCCHHHHHHHHHHHHcCC---eEEEEeCCCCCC---CCC--------CH---HH-----------HHHHHHH
Confidence            35799999999999999999999886   799998765421   000        00   00           1124466


Q ss_pred             HHHCCcEEEeCCcEEEEeCCCc--EEEeC-----CCeEEEeccEEeccCCCCC
Q 012165          130 YKEKGIEMIYQDPVTSIDIEKQ--TLITN-----SGKLLKYGSLIVATGCTAS  175 (469)
Q Consensus       130 ~~~~~i~~~~~~~v~~id~~~~--~v~~~-----~g~~~~yd~lVlAtG~~~~  175 (469)
                      +++.|++++.++++.++..++.  .+.+.     +++++++|.|++|+|.+|.
T Consensus       225 l~~~gV~i~~~~~V~~i~~~~~~v~v~~~~~~~g~~~~i~~D~vi~a~G~~pn  277 (466)
T PRK06115        225 LTKQGMKFKLGSKVTGATAGADGVSLTLEPAAGGAAETLQADYVLVAIGRRPY  277 (466)
T ss_pred             HHhcCCEEEECcEEEEEEEcCCeEEEEEEEcCCCceeEEEeCEEEEccCCccc
Confidence            7888999999999999976433  33332     2357999999999998875

>TIGR03452 mycothione_red mycothione reductase

Probab=98.12  E-value=1e-05  Score=82.51  Aligned_cols=97  Identities=27%  Similarity=0.372  Sum_probs=70.5

Q ss_pred             CCcEEEEcCcHHHHHHHHHHHHcCCCCCcEEEEcCCCCCCCCCCCCcccccCCCCCCCCCCCCCccccCCCCCCCCHhHH
Q 012165           51 NREFVIVGGGNAAGYAARTFVEHGMADGRLCIVSKEAYAPYERPALTKGYLFPLDKKPARLPGFHTCVGSGGERQTPEWY  130 (469)
Q Consensus        51 ~~~vvIIGgG~AGl~aA~~L~~~g~~~~~V~vie~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  130 (469)
                      .++++|||||+.|+.+|..|++.|.   +|++|++.+.+.   +.+..           .+           .....+ +
T Consensus       169 ~k~vvVIGgG~ig~E~A~~l~~~G~---~Vtli~~~~~ll---~~~d~-----------~~-----------~~~l~~-~  219 (452)
T TIGR03452       169 PESLVIVGGGYIAAEFAHVFSALGT---RVTIVNRSTKLL---RHLDE-----------DI-----------SDRFTE-I  219 (452)
T ss_pred             CCcEEEECCCHHHHHHHHHHHhCCC---cEEEEEccCccc---cccCH-----------HH-----------HHHHHH-H
Confidence            4789999999999999999999886   799999875421   00000           00           001122 2


Q ss_pred             HHCCcEEEeCCcEEEEeCCCc--EEEeCCCeEEEeccEEeccCCCCCc
Q 012165          131 KEKGIEMIYQDPVTSIDIEKQ--TLITNSGKLLKYGSLIVATGCTASR  176 (469)
Q Consensus       131 ~~~~i~~~~~~~v~~id~~~~--~v~~~~g~~~~yd~lVlAtG~~~~~  176 (469)
                      .+.+++++.++++.+++.++.  .+++.+|+++++|.+++|+|.+|..
T Consensus       220 ~~~gI~i~~~~~V~~i~~~~~~v~v~~~~g~~i~~D~vl~a~G~~pn~  267 (452)
T TIGR03452       220 AKKKWDIRLGRNVTAVEQDGDGVTLTLDDGSTVTADVLLVATGRVPNG  267 (452)
T ss_pred             HhcCCEEEeCCEEEEEEEcCCeEEEEEcCCCEEEcCEEEEeeccCcCC
Confidence            346899999999999986543  4566678889999999999988763

Mycothiol, a glutathione analog in Mycobacterium tuberculosis and related species, can form a disulfide-linked dimer called mycothione. This enzyme can reduce mycothione to regenerate two mycothiol molecules. The enzyme shows some sequence similarity to glutathione-disulfide reductase, trypanothione-disulfide reductase, and dihydrolipoamide dehydrogenase. The characterized protein from M. tuberculosis, a homodimer, has FAD as a cofactor, one per monomer, and uses NADPH as a substrate.

>PTZ00052 thioredoxin reductase; Provisional

Probab=98.12  E-value=1.1e-05  Score=83.31  Aligned_cols=96  Identities=16%  Similarity=0.209  Sum_probs=71.2

Q ss_pred             CCcEEEEcCcHHHHHHHHHHHHcCCCCCcEEEEcCCCCCCCCCCCCcccccCCCCCCCCCCCCCccccCCCCCCCCHhHH
Q 012165           51 NREFVIVGGGNAAGYAARTFVEHGMADGRLCIVSKEAYAPYERPALTKGYLFPLDKKPARLPGFHTCVGSGGERQTPEWY  130 (469)
Q Consensus        51 ~~~vvIIGgG~AGl~aA~~L~~~g~~~~~V~vie~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  130 (469)
                      .++++|||||+.|+.+|..|++.|.   +|++++....+    +.+..        .   +           .....+.+
T Consensus       182 ~~~vvIIGgG~iG~E~A~~l~~~G~---~Vtli~~~~~l----~~~d~--------~---~-----------~~~l~~~l  232 (499)
T PTZ00052        182 PGKTLIVGASYIGLETAGFLNELGF---DVTVAVRSIPL----RGFDR--------Q---C-----------SEKVVEYM  232 (499)
T ss_pred             CCeEEEECCCHHHHHHHHHHHHcCC---cEEEEEcCccc----ccCCH--------H---H-----------HHHHHHHH
Confidence            4689999999999999999999986   79999753211    11100        0   0           12345677


Q ss_pred             HHCCcEEEeCCcEEEEeCCC--cEEEeCCCeEEEeccEEeccCCCCC
Q 012165          131 KEKGIEMIYQDPVTSIDIEK--QTLITNSGKLLKYGSLIVATGCTAS  175 (469)
Q Consensus       131 ~~~~i~~~~~~~v~~id~~~--~~v~~~~g~~~~yd~lVlAtG~~~~  175 (469)
                      ++.+++++.++.+..+....  ..+.+.+|+++.+|.|++|+|.+|.
T Consensus       233 ~~~GV~i~~~~~v~~v~~~~~~~~v~~~~g~~i~~D~vl~a~G~~pn  279 (499)
T PTZ00052        233 KEQGTLFLEGVVPINIEKMDDKIKVLFSDGTTELFDTVLYATGRKPD  279 (499)
T ss_pred             HHcCCEEEcCCeEEEEEEcCCeEEEEECCCCEEEcCEEEEeeCCCCC
Confidence            88999999998888776533  3566677888999999999998876

>PLN02661 Putative thiazole synthesis

Probab=98.12  E-value=8.3e-06  Score=78.54  Aligned_cols=38  Identities=21%  Similarity=0.390  Sum_probs=32.7

Q ss_pred             CCCCcEEEEcCcHHHHHHHHHHHHc-CCCCCcEEEEcCCCCC
Q 012165           49 NENREFVIVGGGNAAGYAARTFVEH-GMADGRLCIVSKEAYA   89 (469)
Q Consensus        49 ~~~~~vvIIGgG~AGl~aA~~L~~~-g~~~~~V~vie~~~~~   89 (469)
                      ...+||+|||||+||++||..|++. |.   +|+|||+....
T Consensus        90 ~~~~DVlIVGaG~AGl~AA~~La~~~g~---kV~viEk~~~~  128 (357)
T PLN02661         90 YADTDVVIVGAGSAGLSCAYELSKNPNV---KVAIIEQSVSP  128 (357)
T ss_pred             cccCCEEEECCHHHHHHHHHHHHHcCCC---eEEEEecCccc
Confidence            3468999999999999999999975 44   89999997654

>PRK06175 L-aspartate oxidase; Provisional

Probab=98.12  E-value=1e-05  Score=81.92  Aligned_cols=54  Identities=22%  Similarity=0.313  Sum_probs=37.8

Q ss_pred             CCCEEeCCCCCCCCCceEEeccccccCCccCCcccccchHHHHHHHHHHHHHHHh
Q 012165          302 VGGIQVDGQFRTRMPGIFAIGDVAAFPLKMYDRTARVEHVDHARQSAQHCIKALL  356 (469)
Q Consensus       302 ~g~i~Vd~~~~t~~~~Vfa~GD~a~~~~~~~~~~~~~~~~~~A~~~a~~~a~~i~  356 (469)
                      .|||.||.+.||+.|++||+|.|+.......++.. -.+...+...|+.+++++.
T Consensus       331 ~GGi~vd~~~~t~i~gLYAaGE~a~~g~hG~nrl~-gnsl~~~lvfGr~Ag~~a~  384 (433)
T PRK06175        331 MGGIKVDLNSKTSMKNLYAFGEVSCTGVHGANRLA-SNSLLEGLVFSKRGAEKIN  384 (433)
T ss_pred             cCCEEECCCccccCCCeEecccccccCCCccccch-hHHHHHHHHHHHHHHHHHH
Confidence            58999999999999999999999742111011111 2345567778888888875

>COG0446 HcaD Uncharacterized NAD(FAD)-dependent dehydrogenases [General function prediction only]

Probab=98.11  E-value=8.9e-06  Score=81.89  Aligned_cols=98  Identities=17%  Similarity=0.299  Sum_probs=77.7

Q ss_pred             CCcEEEEcCcHHHHHHHHHHHHcCCCCCcEEEEcCCCCCCCCCCCCcccccCCCCCCCCCCCCCccccCCCCCCCCHhHH
Q 012165           51 NREFVIVGGGNAAGYAARTFVEHGMADGRLCIVSKEAYAPYERPALTKGYLFPLDKKPARLPGFHTCVGSGGERQTPEWY  130 (469)
Q Consensus        51 ~~~vvIIGgG~AGl~aA~~L~~~g~~~~~V~vie~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  130 (469)
                      .++++|||+|+.|+.+|..|+++|.   +++++|..+...-.       .+.      ..+           .....+.+
T Consensus       136 ~~~v~vvG~G~~gle~A~~~~~~G~---~v~l~e~~~~~~~~-------~~~------~~~-----------~~~~~~~l  188 (415)
T COG0446         136 PKDVVVVGAGPIGLEAAEAAAKRGK---KVTLIEAADRLGGQ-------LLD------PEV-----------AEELAELL  188 (415)
T ss_pred             cCeEEEECCcHHHHHHHHHHHHcCC---eEEEEEcccccchh-------hhh------HHH-----------HHHHHHHH
Confidence            5899999999999999999999997   79999988764211       000      000           12356778


Q ss_pred             HHCCcEEEeCCcEEEEeCCCcE-----EEeCCCeEEEeccEEeccCCCCC
Q 012165          131 KEKGIEMIYQDPVTSIDIEKQT-----LITNSGKLLKYGSLIVATGCTAS  175 (469)
Q Consensus       131 ~~~~i~~~~~~~v~~id~~~~~-----v~~~~g~~~~yd~lVlAtG~~~~  175 (469)
                      ++++++++++..+..++.....     +...++..+++|.+++++|.+|.
T Consensus       189 ~~~gi~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~d~~~~~~g~~p~  238 (415)
T COG0446         189 EKYGVELLLGTKVVGVEGKGNTLVVERVVGIDGEEIKADLVIIGPGERPN  238 (415)
T ss_pred             HHCCcEEEeCCceEEEEcccCcceeeEEEEeCCcEEEeeEEEEeeccccc
Confidence            8999999999999999987653     56778888999999999999884

>PF13738 Pyr_redox_3: Pyridine nucleotide-disulphide oxidoreductase; PDB: 3D1C_A 4A9W_B 2YLX_A 2YM2_A 2YLW_A 2YLR_A 2YM1_A 2YLS_A 1W4X_A 2YLT_A

Probab=98.11  E-value=1.7e-05  Score=71.57  Aligned_cols=79  Identities=25%  Similarity=0.474  Sum_probs=56.1

Q ss_pred             EEEcCChHHHHHHHHHHhCCCe-Ee-------------------------------------------------------
Q 012165          211 VVVGGGYIGMEVAAAAVGWKLD-TT-------------------------------------------------------  234 (469)
Q Consensus       211 vVvG~G~~g~e~A~~l~~~g~~-v~-------------------------------------------------------  234 (469)
                      +|||+|+.|+-+|..|.+.|.+ +.                                                       
T Consensus         1 ~IIGaG~aGl~~a~~l~~~g~~~v~v~e~~~~~Gg~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   80 (203)
T PF13738_consen    1 VIIGAGPAGLAAAAHLLERGIDPVVVLERNDRPGGVWRRYYSYTRLHSPSFFSSDFGLPDFESFSFDDSPEWRWPHDFPS   80 (203)
T ss_dssp             EEE--SHHHHHHHHHHHHTT---EEEEESSSSSTTHHHCH-TTTT-BSSSCCTGGSS--CCCHSCHHHHHHHHHSBSSEB
T ss_pred             CEECcCHHHHHHHHHHHhCCCCcEEEEeCCCCCCCeeEEeCCCCccccCccccccccCCcccccccccCCCCCCCcccCC
Confidence            6999999999999999999988 55                                                       


Q ss_pred             ------eeHHHHHHcCcEEEcCCeEEEEEeCCCCcEEEEEcCCCCEEeCCEEEEccCC--ccCCc
Q 012165          235 ------RYEQLYQQNGVKFVKGASIKNLEAGSDGRVAAVKLEDGSTIDADTIVIGIGA--KPTVS  291 (469)
Q Consensus       235 ------~~~~~l~~~gV~~~~~~~v~~i~~~~~~~v~~v~~~~g~~i~~D~vi~a~G~--~p~~~  291 (469)
                            .+++..++.+++++++++|++++.++++  ..|++++++++.||.||+|+|.  .|...
T Consensus        81 ~~~v~~yl~~~~~~~~l~i~~~~~V~~v~~~~~~--w~v~~~~~~~~~a~~VVlAtG~~~~p~~p  143 (203)
T PF13738_consen   81 GEEVLDYLQEYAERFGLEIRFNTRVESVRRDGDG--WTVTTRDGRTIRADRVVLATGHYSHPRIP  143 (203)
T ss_dssp             HHHHHHHHHHHHHHTTGGEETS--EEEEEEETTT--EEEEETTS-EEEEEEEEE---SSCSB---
T ss_pred             HHHHHHHHHHHHhhcCcccccCCEEEEEEEeccE--EEEEEEecceeeeeeEEEeeeccCCCCcc
Confidence                  4566677889999999999999987555  4688899988999999999997  55543

...

>PRK07233 hypothetical protein; Provisional

Probab=98.11  E-value=5.6e-06  Score=84.09  Aligned_cols=51  Identities=18%  Similarity=0.284  Sum_probs=39.1

Q ss_pred             eeHHHHHHcCcEEEcCCeEEEEEeCCCCcEEEEEcCCCCEEeCCEEEEccCCc
Q 012165          235 RYEQLYQQNGVKFVKGASIKNLEAGSDGRVAAVKLEDGSTIDADTIVIGIGAK  287 (469)
Q Consensus       235 ~~~~~l~~~gV~~~~~~~v~~i~~~~~~~v~~v~~~~g~~i~~D~vi~a~G~~  287 (469)
                      .+.+.+++.|++++++++|++|+.+ ++.+..+. .+++.+++|.||++++..
T Consensus       203 ~l~~~l~~~g~~v~~~~~V~~i~~~-~~~~~~~~-~~~~~~~ad~vI~a~p~~  253 (434)
T PRK07233        203 ALAEAIEARGGEIRLGTPVTSVVID-GGGVTGVE-VDGEEEDFDAVISTAPPP  253 (434)
T ss_pred             HHHHHHHhcCceEEeCCCeeEEEEc-CCceEEEE-eCCceEECCEEEECCCHH
Confidence            4556677789999999999999864 34443333 567789999999998853

>PRK06481 fumarate reductase flavoprotein subunit; Validated

Probab=98.11  E-value=2e-05  Score=81.54  Aligned_cols=37  Identities=35%  Similarity=0.413  Sum_probs=33.5

Q ss_pred             CCCcEEEEcCcHHHHHHHHHHHHcCCCCCcEEEEcCCCCC
Q 012165           50 ENREFVIVGGGNAAGYAARTFVEHGMADGRLCIVSKEAYA   89 (469)
Q Consensus        50 ~~~~vvIIGgG~AGl~aA~~L~~~g~~~~~V~vie~~~~~   89 (469)
                      ..+||||||+|.||++||.++++.|.   +|+|||+.+..
T Consensus        60 ~~~DVvVVG~G~AGl~AAi~Aa~~Ga---~VivlEK~~~~   96 (506)
T PRK06481         60 DKYDIVIVGAGGAGMSAAIEAKDAGM---NPVILEKMPVA   96 (506)
T ss_pred             ccCCEEEECcCHHHHHHHHHHHHCCC---CEEEEECCCCC
Confidence            46899999999999999999999987   79999998754

>PRK09564 coenzyme A disulfide reductase; Reviewed

Probab=98.10  E-value=1.1e-05  Score=82.22  Aligned_cols=97  Identities=23%  Similarity=0.265  Sum_probs=70.8

Q ss_pred             CCcEEEEcCcHHHHHHHHHHHHcCCCCCcEEEEcCCCCCCCCCCCCcccccCCCCCCCCCCCCCccccCCCCCCCCHhHH
Q 012165           51 NREFVIVGGGNAAGYAARTFVEHGMADGRLCIVSKEAYAPYERPALTKGYLFPLDKKPARLPGFHTCVGSGGERQTPEWY  130 (469)
Q Consensus        51 ~~~vvIIGgG~AGl~aA~~L~~~g~~~~~V~vie~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  130 (469)
                      .++++|||||+.|+.+|..|++.|.   +|++++..+...      .. .+   .   ..+           .....+.+
T Consensus       149 ~~~vvVvGgG~~g~e~A~~l~~~g~---~Vtli~~~~~~l------~~-~~---~---~~~-----------~~~l~~~l  201 (444)
T PRK09564        149 IKNIVIIGAGFIGLEAVEAAKHLGK---NVRIIQLEDRIL------PD-SF---D---KEI-----------TDVMEEEL  201 (444)
T ss_pred             CCEEEEECCCHHHHHHHHHHHhcCC---cEEEEeCCcccC------ch-hc---C---HHH-----------HHHHHHHH
Confidence            4789999999999999999999876   799998765321      00 00   0   000           12345677


Q ss_pred             HHCCcEEEeCCcEEEEeCCCc--EEEeCCCeEEEeccEEeccCCCCC
Q 012165          131 KEKGIEMIYQDPVTSIDIEKQ--TLITNSGKLLKYGSLIVATGCTAS  175 (469)
Q Consensus       131 ~~~~i~~~~~~~v~~id~~~~--~v~~~~g~~~~yd~lVlAtG~~~~  175 (469)
                      ++.|++++.++++.+++.+++  .+.++ +.++.+|.+++|+|..|.
T Consensus       202 ~~~gI~v~~~~~v~~i~~~~~~~~v~~~-~~~i~~d~vi~a~G~~p~  247 (444)
T PRK09564        202 RENGVELHLNEFVKSLIGEDKVEGVVTD-KGEYEADVVIVATGVKPN  247 (444)
T ss_pred             HHCCCEEEcCCEEEEEecCCcEEEEEeC-CCEEEcCEEEECcCCCcC
Confidence            889999999999999976554  23444 446999999999998875

>TIGR00275 flavoprotein, HI0933 family

Probab=98.10  E-value=5.2e-06  Score=83.24  Aligned_cols=46  Identities=30%  Similarity=0.379  Sum_probs=35.0

Q ss_pred             hHHHHCCcEEEeCCcEEEEeCCCc--EEEeCCCeEEEeccEEeccCCCC
Q 012165          128 EWYKEKGIEMIYQDPVTSIDIEKQ--TLITNSGKLLKYGSLIVATGCTA  174 (469)
Q Consensus       128 ~~~~~~~i~~~~~~~v~~id~~~~--~v~~~~g~~~~yd~lVlAtG~~~  174 (469)
                      +.+++.+++++.++.|..+.....  .+.+ ++.++.+|+||+|||...
T Consensus       113 ~~l~~~gv~i~~~~~V~~i~~~~~~~~v~~-~~~~i~ad~VIlAtG~~s  160 (400)
T TIGR00275       113 NELKELGVEILTNSKVKSIKKDDNGFGVET-SGGEYEADKVILATGGLS  160 (400)
T ss_pred             HHHHHCCCEEEeCCEEEEEEecCCeEEEEE-CCcEEEcCEEEECCCCcc
Confidence            345677999999999999876544  3444 456799999999999753

The model when searched with a partial length search brings in proteins with a dinucleotide-binding motif (Rossman fold) over the initial 40 residues of the model, including oxidoreductases and dehydrogenases. Partially characterized members include an FAD-binding protein from Bacillus cereus and flavoprotein HI0933 from Haemophilus influenzae.

>PF03486 HI0933_like: HI0933-like protein; InterPro: IPR004792 This is a family of conserved hypothetical proteins that may include proteins with a dinucleotide-binding motif (Rossman fold), including oxidoreductases and dehydrogenases

Probab=98.09  E-value=1.2e-05  Score=80.28  Aligned_cols=79  Identities=24%  Similarity=0.413  Sum_probs=57.0

Q ss_pred             eEEEEcCChHHHHHHHHHHhCCCeEe------------------------------------------------------
Q 012165          209 KVVVVGGGYIGMEVAAAAVGWKLDTT------------------------------------------------------  234 (469)
Q Consensus       209 ~vvVvG~G~~g~e~A~~l~~~g~~v~------------------------------------------------------  234 (469)
                      +|+|||||++|+-+|..+++.|.+|.                                                      
T Consensus         2 dviIIGgGaAGl~aA~~aa~~g~~V~vlE~~~~~gkKil~tG~GrCN~tn~~~~~~~~~~~~~~~~~f~~~~l~~f~~~d   81 (409)
T PF03486_consen    2 DVIIIGGGAAGLMAAITAAEKGARVLVLERNKRVGKKILITGNGRCNLTNLNIDPSEFLSGYGRNPKFLKSALKRFSPED   81 (409)
T ss_dssp             SEEEE--SHHHHHHHHHHHHTT--EEEE-SSSSS-HHHHHCGGGT-EEEETTSSGGGEECS-TBTTTCTHHHHHHS-HHH
T ss_pred             cEEEECCCHHHHHHHHHHHhCCCCEEEEeCCcccccceeecCCCCccccccccchhhHhhhcccchHHHHHHHhcCCHHH
Confidence            58999999999999999999998886                                                      


Q ss_pred             --------------------------------eeHHHHHHcCcEEEcCCeEEEEEeCCCCcEEEEEcCCCCEEeCCEEEE
Q 012165          235 --------------------------------RYEQLYQQNGVKFVKGASIKNLEAGSDGRVAAVKLEDGSTIDADTIVI  282 (469)
Q Consensus       235 --------------------------------~~~~~l~~~gV~~~~~~~v~~i~~~~~~~v~~v~~~~g~~i~~D~vi~  282 (469)
                                                      .+.+.+++.||+++++++|.+++.. ++.+..|.++++.++.+|.||+
T Consensus        82 ~~~ff~~~Gv~~~~~~~gr~fP~s~~a~~Vv~~L~~~l~~~gv~i~~~~~V~~i~~~-~~~~f~v~~~~~~~~~a~~vIL  160 (409)
T PF03486_consen   82 LIAFFEELGVPTKIEEDGRVFPKSDKASSVVDALLEELKRLGVEIHFNTRVKSIEKK-EDGVFGVKTKNGGEYEADAVIL  160 (409)
T ss_dssp             HHHHHHHTT--EEE-STTEEEETT--HHHHHHHHHHHHHHHT-EEE-S--EEEEEEE-TTEEEEEEETTTEEEEESEEEE
T ss_pred             HHHHHHhcCCeEEEcCCCEECCCCCcHHHHHHHHHHHHHHcCCEEEeCCEeeeeeec-CCceeEeeccCcccccCCEEEE
Confidence                                            4567778899999999999999865 4455578887788999999999


Q ss_pred             ccCCcc
Q 012165          283 GIGAKP  288 (469)
Q Consensus       283 a~G~~p  288 (469)
                      |+|-..
T Consensus       161 AtGG~S  166 (409)
T PF03486_consen  161 ATGGKS  166 (409)
T ss_dssp             ----SS
T ss_pred             ecCCCC
Confidence            999764

; PDB: 2I0Z_A 3V76_A 2GQF_A.

>TIGR03364 HpnW_proposed FAD dependent oxidoreductase TIGR03364

Probab=98.09  E-value=1.4e-05  Score=79.30  Aligned_cols=39  Identities=26%  Similarity=0.473  Sum_probs=32.6

Q ss_pred             CCcEEEeCCcEEEEeCCCcEEEeCCCeEEEeccEEeccCCCC
Q 012165          133 KGIEMIYQDPVTSIDIEKQTLITNSGKLLKYGSLIVATGCTA  174 (469)
Q Consensus       133 ~~i~~~~~~~v~~id~~~~~v~~~~g~~~~yd~lVlAtG~~~  174 (469)
                      .|++++.+++|..++..  .|.+.+|. +.+|+||+|||...
T Consensus       159 ~Gv~i~~~t~V~~i~~~--~v~t~~g~-i~a~~VV~A~G~~s  197 (365)
T TIGR03364       159 HGVEFHWNTAVTSVETG--TVRTSRGD-VHADQVFVCPGADF  197 (365)
T ss_pred             CCCEEEeCCeEEEEecC--eEEeCCCc-EEeCEEEECCCCCh
Confidence            39999999999999754  78887775 78999999999764

This clade of FAD dependent oxidoreductases (members of the pfam01266 family) is syntenically associated with a family of proposed phosphonatase-like enzymes (TIGR03351) and is also found (less frequently) in association with phosphonate transporter components. A likely role for this enzyme involves the oxidative deamination of an aminophosphonate differring slightly from 2-aminoethylphosphonate, possibly 1-hydroxy-2-aminoethylphosphonate (see the comments for TIGR03351). Many members of the larger FAD dependent oxidoreductase family act as amino acid oxidative deaminases.

>PF01134 GIDA: Glucose inhibited division protein A; InterPro: IPR002218 GidA is a tRNA modification enzyme found in bacteria and mitochondria

Probab=98.09  E-value=2.3e-06  Score=83.57  Aligned_cols=39  Identities=23%  Similarity=0.446  Sum_probs=31.5

Q ss_pred             CCcEEEeCCcEEEEeCCCc---EEEeCCCeEEEeccEEeccCC
Q 012165          133 KGIEMIYQDPVTSIDIEKQ---TLITNSGKLLKYGSLIVATGC  172 (469)
Q Consensus       133 ~~i~~~~~~~v~~id~~~~---~v~~~~g~~~~yd~lVlAtG~  172 (469)
                      .+++++. .+|+.+..++.   -|.+.+|..+.+|.+|+|||.
T Consensus       109 ~nl~i~~-~~V~~l~~e~~~v~GV~~~~g~~~~a~~vVlaTGt  150 (392)
T PF01134_consen  109 PNLTIIQ-GEVTDLIVENGKVKGVVTKDGEEIEADAVVLATGT  150 (392)
T ss_dssp             TTEEEEE-S-EEEEEECTTEEEEEEETTSEEEEECEEEE-TTT
T ss_pred             CCeEEEE-cccceEEecCCeEEEEEeCCCCEEecCEEEEeccc
Confidence            5898876 69999987665   467889999999999999997

Though its precise molecular function of these proteins is not known, it is involved in the 5-carboxymethylaminomethyl modification of the wobble uridine base in some tRNAs [, ]. Sequence variations in the human mitochondrial protein may influence the severity of aminoglycoside-induced deafness []. This entry is found in GidA and related proteins, such as the methylenetetrahydrofolate--tRNA-(uracil-5-)-methyltransferase enzyme TrmFO.; GO: 0050660 flavin adenine dinucleotide binding, 0008033 tRNA processing; PDB: 3CES_C 3CP2_A 3G05_A 2CUL_A 3CP8_A 2ZXI_B 2ZXH_A 3G5S_A 3G5R_A 3G5Q_A.

>PRK08010 pyridine nucleotide-disulfide oxidoreductase; Provisional

Probab=98.09  E-value=1.2e-05  Score=81.99  Aligned_cols=98  Identities=18%  Similarity=0.341  Sum_probs=71.8

Q ss_pred             CCCcEEEEcCcHHHHHHHHHHHHcCCCCCcEEEEcCCCCCCCCCCCCcccccCCCCCCCCCCCCCccccCCCCCCCCHhH
Q 012165           50 ENREFVIVGGGNAAGYAARTFVEHGMADGRLCIVSKEAYAPYERPALTKGYLFPLDKKPARLPGFHTCVGSGGERQTPEW  129 (469)
Q Consensus        50 ~~~~vvIIGgG~AGl~aA~~L~~~g~~~~~V~vie~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  129 (469)
                      ..++++|||+|+.|+.+|..|++.|.   +|+++++.+...   |..        ..   .+           .....+.
T Consensus       157 ~~~~v~ViGgG~~g~E~A~~l~~~g~---~Vtli~~~~~~l---~~~--------~~---~~-----------~~~l~~~  208 (441)
T PRK08010        157 LPGHLGILGGGYIGVEFASMFANFGS---KVTILEAASLFL---PRE--------DR---DI-----------ADNIATI  208 (441)
T ss_pred             cCCeEEEECCCHHHHHHHHHHHHCCC---eEEEEecCCCCC---CCc--------CH---HH-----------HHHHHHH
Confidence            34689999999999999999999876   799999865321   000        00   00           0123466


Q ss_pred             HHHCCcEEEeCCcEEEEeCCCcE--EEeCCCeEEEeccEEeccCCCCCc
Q 012165          130 YKEKGIEMIYQDPVTSIDIEKQT--LITNSGKLLKYGSLIVATGCTASR  176 (469)
Q Consensus       130 ~~~~~i~~~~~~~v~~id~~~~~--v~~~~g~~~~yd~lVlAtG~~~~~  176 (469)
                      +++.|++++.++++.+++.++..  +.++++ ++.+|.+++|+|.+|..
T Consensus       209 l~~~gV~v~~~~~v~~i~~~~~~v~v~~~~g-~i~~D~vl~a~G~~pn~  256 (441)
T PRK08010        209 LRDQGVDIILNAHVERISHHENQVQVHSEHA-QLAVDALLIASGRQPAT  256 (441)
T ss_pred             HHhCCCEEEeCCEEEEEEEcCCEEEEEEcCC-eEEeCEEEEeecCCcCC
Confidence            78899999999999999865543  344444 48999999999998863

>PRK13748 putative mercuric reductase; Provisional

Probab=98.09  E-value=1.2e-05  Score=84.56  Aligned_cols=96  Identities=20%  Similarity=0.318  Sum_probs=70.5

Q ss_pred             CCcEEEEcCcHHHHHHHHHHHHcCCCCCcEEEEcCCCCCCCCCCCCcccccCCCCCCCCCCCCCccccCCCCCCCCHhHH
Q 012165           51 NREFVIVGGGNAAGYAARTFVEHGMADGRLCIVSKEAYAPYERPALTKGYLFPLDKKPARLPGFHTCVGSGGERQTPEWY  130 (469)
Q Consensus        51 ~~~vvIIGgG~AGl~aA~~L~~~g~~~~~V~vie~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  130 (469)
                      .++++|||||+.|+.+|..|++.|.   +|+|+++...++            ..+.   .+           .....+.+
T Consensus       270 ~~~vvViGgG~ig~E~A~~l~~~g~---~Vtli~~~~~l~------------~~d~---~~-----------~~~l~~~l  320 (561)
T PRK13748        270 PERLAVIGSSVVALELAQAFARLGS---KVTILARSTLFF------------REDP---AI-----------GEAVTAAF  320 (561)
T ss_pred             CCeEEEECCCHHHHHHHHHHHHcCC---EEEEEecCcccc------------ccCH---HH-----------HHHHHHHH
Confidence            4789999999999999999999886   799998643210            0000   00           11345667


Q ss_pred             HHCCcEEEeCCcEEEEeCCCcE--EEeCCCeEEEeccEEeccCCCCCc
Q 012165          131 KEKGIEMIYQDPVTSIDIEKQT--LITNSGKLLKYGSLIVATGCTASR  176 (469)
Q Consensus       131 ~~~~i~~~~~~~v~~id~~~~~--v~~~~g~~~~yd~lVlAtG~~~~~  176 (469)
                      ++.|++++.++.+..++.++..  +.++++ ++.+|.+++|+|..|..
T Consensus       321 ~~~gI~i~~~~~v~~i~~~~~~~~v~~~~~-~i~~D~vi~a~G~~pn~  367 (561)
T PRK13748        321 RAEGIEVLEHTQASQVAHVDGEFVLTTGHG-ELRADKLLVATGRAPNT  367 (561)
T ss_pred             HHCCCEEEcCCEEEEEEecCCEEEEEecCC-eEEeCEEEEccCCCcCC
Confidence            8899999999999998765443  344444 59999999999998863

>TIGR02028 ChlP geranylgeranyl reductase

Probab=98.09  E-value=1.5e-05  Score=79.96  Aligned_cols=34  Identities=26%  Similarity=0.483  Sum_probs=31.1

Q ss_pred             CcEEEEcCcHHHHHHHHHHHHcCCCCCcEEEEcCCCC
Q 012165           52 REFVIVGGGNAAGYAARTFVEHGMADGRLCIVSKEAY   88 (469)
Q Consensus        52 ~~vvIIGgG~AGl~aA~~L~~~g~~~~~V~vie~~~~   88 (469)
                      .||+||||||||++||..|++.|+   +|+|+|+...
T Consensus         1 ~~VvIVGaGPAG~~aA~~la~~G~---~V~llE~~~~   34 (398)
T TIGR02028         1 LRVAVVGGGPAGASAAETLASAGI---QTFLLERKPD   34 (398)
T ss_pred             CeEEEECCcHHHHHHHHHHHhCCC---cEEEEecCCC
Confidence            489999999999999999999998   7999998753

This model represents the reductase which acts reduces the geranylgeranyl group to the phytyl group in the side chain of chlorophyll. It is unclear whether the enzyme has a preference for acting before or after the attachment of the side chain to chlorophyllide a by chlorophyll synthase. This clade is restricted to plants and cyanobacteria to separate it from the homologues which act in the biosynthesis of bacteriochlorophyll.

>TIGR01423 trypano_reduc trypanothione-disulfide reductase

Probab=98.08  E-value=1.1e-05  Score=82.67  Aligned_cols=101  Identities=18%  Similarity=0.307  Sum_probs=71.6

Q ss_pred             CCCcEEEEcCcHHHHHHHHHHHHcCCCCCcEEEEcCCCCCCCCCCCCcccccCCCCCCCCCCCCCccccCCCCCCCCHhH
Q 012165           50 ENREFVIVGGGNAAGYAARTFVEHGMADGRLCIVSKEAYAPYERPALTKGYLFPLDKKPARLPGFHTCVGSGGERQTPEW  129 (469)
Q Consensus        50 ~~~~vvIIGgG~AGl~aA~~L~~~g~~~~~V~vie~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  129 (469)
                      ..++++|||||+.|+.+|..+........+|+|++..+...   +.+        +.   .+           .....+.
T Consensus       186 ~~~~vvIIGgG~iG~E~A~~~~~l~~~G~~Vtli~~~~~il---~~~--------d~---~~-----------~~~l~~~  240 (486)
T TIGR01423       186 PPRRVLTVGGGFISVEFAGIFNAYKPRGGKVTLCYRNNMIL---RGF--------DS---TL-----------RKELTKQ  240 (486)
T ss_pred             CCCeEEEECCCHHHHHHHHHHHHhccCCCeEEEEecCCccc---ccc--------CH---HH-----------HHHHHHH
Confidence            35789999999999999987765411123899999765421   000        00   00           1234566


Q ss_pred             HHHCCcEEEeCCcEEEEeCCC---cEEEeCCCeEEEeccEEeccCCCCC
Q 012165          130 YKEKGIEMIYQDPVTSIDIEK---QTLITNSGKLLKYGSLIVATGCTAS  175 (469)
Q Consensus       130 ~~~~~i~~~~~~~v~~id~~~---~~v~~~~g~~~~yd~lVlAtG~~~~  175 (469)
                      +++.|++++.++.+.++....   ..+.+.+++++++|.+++|+|.+|.
T Consensus       241 L~~~GI~i~~~~~v~~i~~~~~~~~~v~~~~g~~i~~D~vl~a~G~~Pn  289 (486)
T TIGR01423       241 LRANGINIMTNENPAKVTLNADGSKHVTFESGKTLDVDVVMMAIGRVPR  289 (486)
T ss_pred             HHHcCCEEEcCCEEEEEEEcCCceEEEEEcCCCEEEcCEEEEeeCCCcC
Confidence            788999999999999987532   3567777888999999999998876

Trypanothione, a glutathione-modified derivative of spermidine, is (in its reduced form) an important antioxidant found in trypanosomatids (Crithidia, Leishmania, Trypanosoma). This model describes trypanothione reductase, a possible antitrypanosomal drug target closely related to some forms of glutathione reductase.

>PF01134 GIDA: Glucose inhibited division protein A; InterPro: IPR002218 GidA is a tRNA modification enzyme found in bacteria and mitochondria

Probab=98.07  E-value=1.8e-05  Score=77.44  Aligned_cols=76  Identities=29%  Similarity=0.508  Sum_probs=62.2

Q ss_pred             eEEEEcCChHHHHHHHHHHhCCCeEe------------------------------------------------------
Q 012165          209 KVVVVGGGYIGMEVAAAAVGWKLDTT------------------------------------------------------  234 (469)
Q Consensus       209 ~vvVvG~G~~g~e~A~~l~~~g~~v~------------------------------------------------------  234 (469)
                      .|+|||||..|+|.|..+++.|.+|.                                                      
T Consensus         1 DViVVGgG~AG~eAA~aaAr~G~~V~Lit~~~d~i~~~~Cnpsigg~~kg~L~~Eidalgg~m~~~aD~~~i~~~~lN~s   80 (392)
T PF01134_consen    1 DVIVVGGGHAGCEAALAAARMGAKVLLITHNTDTIGEMSCNPSIGGIAKGHLVREIDALGGLMGRAADETGIHFRMLNRS   80 (392)
T ss_dssp             EEEEESSSHHHHHHHHHHHHTT--EEEEES-GGGTT--SSSSEEESTTHHHHHHHHHHTT-SHHHHHHHHEEEEEEESTT
T ss_pred             CEEEECCCHHHHHHHHHHHHCCCCEEEEeecccccccccchhhhccccccchhHHHhhhhhHHHHHHhHhhhhhhccccc
Confidence            48999999999999999999999886                                                      


Q ss_pred             -------------------eeHHHHHH-cCcEEEcCCeEEEEEeCCCCcEEEEEcCCCCEEeCCEEEEccCC
Q 012165          235 -------------------RYEQLYQQ-NGVKFVKGASIKNLEAGSDGRVAAVKLEDGSTIDADTIVIGIGA  286 (469)
Q Consensus       235 -------------------~~~~~l~~-~gV~~~~~~~v~~i~~~~~~~v~~v~~~~g~~i~~D~vi~a~G~  286 (469)
                                         .+.+.+++ .+++++. ..|+++.. +++++.+|.+.+|+++.+|.||+|||.
T Consensus        81 kGpav~a~r~qvDr~~y~~~~~~~l~~~~nl~i~~-~~V~~l~~-e~~~v~GV~~~~g~~~~a~~vVlaTGt  150 (392)
T PF01134_consen   81 KGPAVHALRAQVDRDKYSRAMREKLESHPNLTIIQ-GEVTDLIV-ENGKVKGVVTKDGEEIEADAVVLATGT  150 (392)
T ss_dssp             S-GGCTEEEEEE-HHHHHHHHHHHHHTSTTEEEEE-S-EEEEEE-CTTEEEEEEETTSEEEEECEEEE-TTT
T ss_pred             CCCCccchHhhccHHHHHHHHHHHHhcCCCeEEEE-cccceEEe-cCCeEEEEEeCCCCEEecCEEEEeccc
Confidence                               34455555 7899875 57999975 478899999999999999999999999

Though its precise molecular function of these proteins is not known, it is involved in the 5-carboxymethylaminomethyl modification of the wobble uridine base in some tRNAs [, ]. Sequence variations in the human mitochondrial protein may influence the severity of aminoglycoside-induced deafness []. This entry is found in GidA and related proteins, such as the methylenetetrahydrofolate--tRNA-(uracil-5-)-methyltransferase enzyme TrmFO.; GO: 0050660 flavin adenine dinucleotide binding, 0008033 tRNA processing; PDB: 3CES_C 3CP2_A 3G05_A 2CUL_A 3CP8_A 2ZXI_B 2ZXH_A 3G5S_A 3G5R_A 3G5Q_A.

>TIGR01438 TGR thioredoxin and glutathione reductase selenoprotein

Probab=98.06  E-value=1.6e-05  Score=81.66  Aligned_cols=96  Identities=14%  Similarity=0.185  Sum_probs=69.0

Q ss_pred             CCcEEEEcCcHHHHHHHHHHHHcCCCCCcEEEEcCCCCCCCCCCCCcccccCCCCCCCCCCCCCccccCCCCCCCCHhHH
Q 012165           51 NREFVIVGGGNAAGYAARTFVEHGMADGRLCIVSKEAYAPYERPALTKGYLFPLDKKPARLPGFHTCVGSGGERQTPEWY  130 (469)
Q Consensus        51 ~~~vvIIGgG~AGl~aA~~L~~~g~~~~~V~vie~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  130 (469)
                      ..+++|||||+.|+.+|..|++.|.   +|+++++...+    +.+.        ...              .....+.+
T Consensus       180 ~~~vvIIGgG~iG~E~A~~l~~~G~---~Vtli~~~~~l----~~~d--------~~~--------------~~~l~~~L  230 (484)
T TIGR01438       180 PGKTLVVGASYVALECAGFLAGIGL---DVTVMVRSILL----RGFD--------QDC--------------ANKVGEHM  230 (484)
T ss_pred             CCCEEEECCCHHHHHHHHHHHHhCC---cEEEEEecccc----cccC--------HHH--------------HHHHHHHH
Confidence            4689999999999999999999886   79999753211    1110        000              01235667


Q ss_pred             HHCCcEEEeCCcEEEEeCCCc--EEEeCCC---eEEEeccEEeccCCCCC
Q 012165          131 KEKGIEMIYQDPVTSIDIEKQ--TLITNSG---KLLKYGSLIVATGCTAS  175 (469)
Q Consensus       131 ~~~~i~~~~~~~v~~id~~~~--~v~~~~g---~~~~yd~lVlAtG~~~~  175 (469)
                      ++.||+++.++.+..+.....  .+++.++   +++++|.+++|+|..|.
T Consensus       231 ~~~gV~i~~~~~v~~v~~~~~~~~v~~~~~~~~~~i~~D~vl~a~G~~pn  280 (484)
T TIGR01438       231 EEHGVKFKRQFVPIKVEQIEAKVKVTFTDSTNGIEEEYDTVLLAIGRDAC  280 (484)
T ss_pred             HHcCCEEEeCceEEEEEEcCCeEEEEEecCCcceEEEeCEEEEEecCCcC
Confidence            889999999988888765332  4555554   37999999999998876

This homodimeric, FAD-containing member of the pyridine nucleotide disulfide oxidoreductase family contains a C-terminal motif Cys-SeCys-Gly, where SeCys is selenocysteine encoded by TGA (in some sequence reports interpreted as a stop codon). In some members of this subfamily, Cys-SeCys-Gly is replaced by Cys-Cys-Gly. The reach of the selenium atom at the C-term arm of the protein is proposed to allow broad substrate specificity.

>PRK06475 salicylate hydroxylase; Provisional

Probab=98.06  E-value=1.6e-05  Score=79.98  Aligned_cols=35  Identities=26%  Similarity=0.262  Sum_probs=32.0

Q ss_pred             CcEEEEcCcHHHHHHHHHHHHcCCCCCcEEEEcCCCCC
Q 012165           52 REFVIVGGGNAAGYAARTFVEHGMADGRLCIVSKEAYA   89 (469)
Q Consensus        52 ~~vvIIGgG~AGl~aA~~L~~~g~~~~~V~vie~~~~~   89 (469)
                      .+|+|||||+||+++|..|++.|+   +|+|+|+.+.+
T Consensus         3 ~~V~IvGgGiaGl~~A~~L~~~G~---~V~i~E~~~~~   37 (400)
T PRK06475          3 GSPLIAGAGVAGLSAALELAARGW---AVTIIEKAQEL   37 (400)
T ss_pred             CcEEEECCCHHHHHHHHHHHhCCC---cEEEEecCCcc
Confidence            689999999999999999999988   79999987653

>PRK14727 putative mercuric reductase; Provisional

Probab=98.05  E-value=1.6e-05  Score=81.80  Aligned_cols=96  Identities=20%  Similarity=0.363  Sum_probs=69.7

Q ss_pred             CCcEEEEcCcHHHHHHHHHHHHcCCCCCcEEEEcCCCCCCCCCCCCcccccCCCCCCCCCCCCCccccCCCCCCCCHhHH
Q 012165           51 NREFVIVGGGNAAGYAARTFVEHGMADGRLCIVSKEAYAPYERPALTKGYLFPLDKKPARLPGFHTCVGSGGERQTPEWY  130 (469)
Q Consensus        51 ~~~vvIIGgG~AGl~aA~~L~~~g~~~~~V~vie~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  130 (469)
                      .++++|||||+.|+..|..|++.|.   +|+++++...++    .+        +.   .+           .....+.+
T Consensus       188 ~k~vvVIGgG~iG~E~A~~l~~~G~---~Vtlv~~~~~l~----~~--------d~---~~-----------~~~l~~~L  238 (479)
T PRK14727        188 PASLTVIGSSVVAAEIAQAYARLGS---RVTILARSTLLF----RE--------DP---LL-----------GETLTACF  238 (479)
T ss_pred             CCeEEEECCCHHHHHHHHHHHHcCC---EEEEEEcCCCCC----cc--------hH---HH-----------HHHHHHHH
Confidence            4789999999999999999999876   799997542110    00        00   00           11245567


Q ss_pred             HHCCcEEEeCCcEEEEeCCCc--EEEeCCCeEEEeccEEeccCCCCCc
Q 012165          131 KEKGIEMIYQDPVTSIDIEKQ--TLITNSGKLLKYGSLIVATGCTASR  176 (469)
Q Consensus       131 ~~~~i~~~~~~~v~~id~~~~--~v~~~~g~~~~yd~lVlAtG~~~~~  176 (469)
                      ++.|++++.++++..++.++.  .+.+.++ ++.+|.+++|+|..|..
T Consensus       239 ~~~GV~i~~~~~V~~i~~~~~~~~v~~~~g-~i~aD~VlvA~G~~pn~  285 (479)
T PRK14727        239 EKEGIEVLNNTQASLVEHDDNGFVLTTGHG-ELRAEKLLISTGRHANT  285 (479)
T ss_pred             HhCCCEEEcCcEEEEEEEeCCEEEEEEcCC-eEEeCEEEEccCCCCCc
Confidence            889999999999998875443  3444444 58999999999998763

>PRK05945 sdhA succinate dehydrogenase flavoprotein subunit; Reviewed

Probab=98.05  E-value=1.4e-05  Score=84.05  Aligned_cols=38  Identities=29%  Similarity=0.274  Sum_probs=32.7

Q ss_pred             CCCcEEEEcCcHHHHHHHHHHHHcCCCCCcEEEEcCCCC
Q 012165           50 ENREFVIVGGGNAAGYAARTFVEHGMADGRLCIVSKEAY   88 (469)
Q Consensus        50 ~~~~vvIIGgG~AGl~aA~~L~~~g~~~~~V~vie~~~~   88 (469)
                      ..+||||||||.||++||.++++.+. ..+|+|+|+...
T Consensus         2 ~~~DVlVIG~G~AGl~AAi~aa~~g~-g~~V~vleK~~~   39 (575)
T PRK05945          2 LEHDVVIVGGGLAGCRAALEIKRLDP-SLDVAVVAKTHP   39 (575)
T ss_pred             CcccEEEECccHHHHHHHHHHHHhcC-CCcEEEEeccCC
Confidence            45799999999999999999998763 458999999764

>PRK13339 malate:quinone oxidoreductase; Reviewed

Probab=98.05  E-value=0.00011  Score=75.00  Aligned_cols=44  Identities=20%  Similarity=0.240  Sum_probs=36.4

Q ss_pred             CCCCcEEEEcCcHHHHHHHHHHHHcCCCCCcEEEEcCCCCCCCCC
Q 012165           49 NENREFVIVGGGNAAGYAARTFVEHGMADGRLCIVSKEAYAPYER   93 (469)
Q Consensus        49 ~~~~~vvIIGgG~AGl~aA~~L~~~g~~~~~V~vie~~~~~~~~~   93 (469)
                      +..+||||||||++|+++|..|++... ..+|+|+|+.....++.
T Consensus         4 ~~~~DvvIIGgGI~G~sla~~L~~~~~-~~~V~vlEr~~~~a~~s   47 (497)
T PRK13339          4 SESKDVVLVGAGILSTTFGVLLKELDP-DWNIEVVERLDSPAIES   47 (497)
T ss_pred             CccCCEEEECchHHHHHHHHHHHhCCC-CCeEEEEEcCCCcchhc
Confidence            456799999999999999999999843 56999999955666553

>TIGR00292 thiazole biosynthesis enzyme

Probab=98.01  E-value=0.00016  Score=67.58  Aligned_cols=147  Identities=20%  Similarity=0.243  Sum_probs=90.9

Q ss_pred             CCeEEEEcCChHHHHHHHHHHhCCCeEe----------------------------------------------------
Q 012165          207 AKKVVVVGGGYIGMEVAAAAVGWKLDTT----------------------------------------------------  234 (469)
Q Consensus       207 ~~~vvVvG~G~~g~e~A~~l~~~g~~v~----------------------------------------------------  234 (469)
                      .-+|+|||+|+.|+-+|..|++.|.++.                                                    
T Consensus        21 ~~DVvIVGgGpAGL~aA~~la~~G~~V~vlEk~~~~Ggg~~~gg~~~~~~~~~~~~~~~l~~~gi~~~~~~~g~~~~~~~  100 (254)
T TIGR00292        21 ESDVIIVGAGPSGLTAAYYLAKNGLKVCVLERSLAFGGGSWGGGMLFSKIVVEKPAHEILDEFGIRYEDEGDGYVVADSA  100 (254)
T ss_pred             CCCEEEECCCHHHHHHHHHHHHCCCcEEEEecCCCCCccccCCCcceecccccchHHHHHHHCCCCeeeccCceEEeeHH
Confidence            4579999999999999999999887765                                                    


Q ss_pred             ----eeHHHHHHcCcEEEcCCeEEEEEeCCCC-cEEEEEcCC-----------CCEEeCCEEEEccCCccCC-chh-hhc
Q 012165          235 ----RYEQLYQQNGVKFVKGASIKNLEAGSDG-RVAAVKLED-----------GSTIDADTIVIGIGAKPTV-SPF-ERV  296 (469)
Q Consensus       235 ----~~~~~l~~~gV~~~~~~~v~~i~~~~~~-~v~~v~~~~-----------g~~i~~D~vi~a~G~~p~~-~~~-~~~  296 (469)
                          .+.+...+.|++++.++.+.++...+++ ++.+|.+..           ...+.++.||.|+|..... .++ +..
T Consensus       101 el~~~L~~~a~e~GV~I~~~t~V~dli~~~~~~~V~GVv~~~~~v~~~g~~~d~~~i~Ak~VVdATG~~a~v~~~l~~~~  180 (254)
T TIGR00292       101 EFISTLASKALQAGAKIFNGTSVEDLITRDDTVGVAGVVINWSAIELAGLHVDPLTQRSRVVVDATGHDAEIVAVCAKKI  180 (254)
T ss_pred             HHHHHHHHHHHHcCCEEECCcEEEEEEEeCCCCceEEEEeCCccccccCCCCCCEEEEcCEEEEeecCCchHHHHHHHHc
Confidence                2334456789999999999998765442 577776532           2478999999999976532 232 222


Q ss_pred             CCcccC------CCE--------EeCCCCCCCCCceEEeccccccCCccCCcccccchHHHHHHHHHHHHHHHhc
Q 012165          297 GLNSSV------GGI--------QVDGQFRTRMPGIFAIGDVAAFPLKMYDRTARVEHVDHARQSAQHCIKALLS  357 (469)
Q Consensus       297 gl~~~~------g~i--------~Vd~~~~t~~~~Vfa~GD~a~~~~~~~~~~~~~~~~~~A~~~a~~~a~~i~~  357 (469)
                      ++....      +..        .|+.+- --+|++|++|=.+.-... ..+..+  ....=...|+.+|+.++.
T Consensus       181 ~~~~~~~~~~g~~~~~~~~~e~~~~~~t~-~~~~g~~~~gm~~~~~~~-~~rmgp--~fg~m~~sg~~~a~~~~~  251 (254)
T TIGR00292       181 VLEDQVPKLGGEKSMWAEVAEVAIHENTR-EVVPNLYVAGMAVAAVHG-LPRMGP--IFGGMLLSGKHVAEQILE  251 (254)
T ss_pred             CcccCCcccCCchhhhhhhhHHHHHhccC-cccCCEEEechhhhhhcC-CCCcCc--hHHHHHHhhHHHHHHHHH
Confidence            222110      111        111111 148999999977653211 011111  111122457777776653

This enzyme is involved in the biosynthesis of the thiamine precursor thiazole, and is repressed by thiamine.This family includes c-thi1, a Citrus gene induced during natural and ethylene induced fruit maturation and is highly homologous to plant and yeast thi genes involved in thiamine biosynthesis.

>PRK06292 dihydrolipoamide dehydrogenase; Validated

Probab=98.00  E-value=2e-05  Score=80.73  Aligned_cols=98  Identities=14%  Similarity=0.267  Sum_probs=70.2

Q ss_pred             CCCcEEEEcCcHHHHHHHHHHHHcCCCCCcEEEEcCCCCCCCCCCCCcccccCCCCCCCCCCCCCccccCCCCCCCCHhH
Q 012165           50 ENREFVIVGGGNAAGYAARTFVEHGMADGRLCIVSKEAYAPYERPALTKGYLFPLDKKPARLPGFHTCVGSGGERQTPEW  129 (469)
Q Consensus        50 ~~~~vvIIGgG~AGl~aA~~L~~~g~~~~~V~vie~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  129 (469)
                      ..++++|||||+.|+.+|..|++.|.   +|+++++.+...   +.+        +.   .+           .....+.
T Consensus       168 ~~k~v~VIGgG~~g~E~A~~l~~~g~---~Vtli~~~~~~l---~~~--------d~---~~-----------~~~~~~~  219 (460)
T PRK06292        168 LPKSLAVIGGGVIGLELGQALSRLGV---KVTVFERGDRIL---PLE--------DP---EV-----------SKQAQKI  219 (460)
T ss_pred             cCCeEEEECCCHHHHHHHHHHHHcCC---cEEEEecCCCcC---cch--------hH---HH-----------HHHHHHH
Confidence            35799999999999999999999886   799999875421   000        00   00           1123455


Q ss_pred             HHHCCcEEEeCCcEEEEeCCCc-EEE--eC--CCeEEEeccEEeccCCCCCc
Q 012165          130 YKEKGIEMIYQDPVTSIDIEKQ-TLI--TN--SGKLLKYGSLIVATGCTASR  176 (469)
Q Consensus       130 ~~~~~i~~~~~~~v~~id~~~~-~v~--~~--~g~~~~yd~lVlAtG~~~~~  176 (469)
                      +++. +++++++++.+++..+. .++  ..  ++.++++|.+++|+|.+|..
T Consensus       220 l~~~-I~i~~~~~v~~i~~~~~~~v~~~~~~~~~~~i~~D~vi~a~G~~p~~  270 (460)
T PRK06292        220 LSKE-FKIKLGAKVTSVEKSGDEKVEELEKGGKTETIEADYVLVATGRRPNT  270 (460)
T ss_pred             Hhhc-cEEEcCCEEEEEEEcCCceEEEEEcCCceEEEEeCEEEEccCCccCC
Confidence            6777 99999999999976543 344  22  33569999999999988763

>PRK00711 D-amino acid dehydrogenase small subunit; Validated

Probab=97.99  E-value=6.8e-05  Score=75.76  Aligned_cols=51  Identities=29%  Similarity=0.488  Sum_probs=39.6

Q ss_pred             eHHHHHHcCcEEEcCCeEEEEEeCCCCcEEEEEcCCCCEEeCCEEEEccCCcc
Q 012165          236 YEQLYQQNGVKFVKGASIKNLEAGSDGRVAAVKLEDGSTIDADTIVIGIGAKP  288 (469)
Q Consensus       236 ~~~~l~~~gV~~~~~~~v~~i~~~~~~~v~~v~~~~g~~i~~D~vi~a~G~~p  288 (469)
                      +.+.+++.|++++.++.|++++.. ++.+..+.+.++ ++.+|.||+|+|...
T Consensus       207 l~~~~~~~G~~i~~~~~V~~i~~~-~~~~~~v~t~~~-~~~a~~VV~a~G~~~  257 (416)
T PRK00711        207 LAAMAEQLGVKFRFNTPVDGLLVE-GGRITGVQTGGG-VITADAYVVALGSYS  257 (416)
T ss_pred             HHHHHHHCCCEEEcCCEEEEEEec-CCEEEEEEeCCc-EEeCCEEEECCCcch
Confidence            345667889999999999999864 444545666655 799999999999754

>PTZ00058 glutathione reductase; Provisional

Probab=97.99  E-value=2.3e-05  Score=81.44  Aligned_cols=97  Identities=18%  Similarity=0.213  Sum_probs=70.6

Q ss_pred             CCcEEEEcCcHHHHHHHHHHHHcCCCCCcEEEEcCCCCCCCCCCCCcccccCCCCCCCCCCCCCccccCCCCCCCCHhHH
Q 012165           51 NREFVIVGGGNAAGYAARTFVEHGMADGRLCIVSKEAYAPYERPALTKGYLFPLDKKPARLPGFHTCVGSGGERQTPEWY  130 (469)
Q Consensus        51 ~~~vvIIGgG~AGl~aA~~L~~~g~~~~~V~vie~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  130 (469)
                      .++++|||||+.|+.+|..|++.|.   +|++++..+...   +.+        +..   +           .....+.+
T Consensus       237 pk~VvIIGgG~iGlE~A~~l~~~G~---~Vtli~~~~~il---~~~--------d~~---i-----------~~~l~~~L  288 (561)
T PTZ00058        237 AKRIGIAGSGYIAVELINVVNRLGA---ESYIFARGNRLL---RKF--------DET---I-----------INELENDM  288 (561)
T ss_pred             CCEEEEECCcHHHHHHHHHHHHcCC---cEEEEEeccccc---ccC--------CHH---H-----------HHHHHHHH
Confidence            5799999999999999999999886   799999765320   000        000   0           11234567


Q ss_pred             HHCCcEEEeCCcEEEEeCCCc---EEEeCC-CeEEEeccEEeccCCCCC
Q 012165          131 KEKGIEMIYQDPVTSIDIEKQ---TLITNS-GKLLKYGSLIVATGCTAS  175 (469)
Q Consensus       131 ~~~~i~~~~~~~v~~id~~~~---~v~~~~-g~~~~yd~lVlAtG~~~~  175 (469)
                      ++.|++++.+..+.+++.++.   .+...+ ++++++|.|++|+|.+|.
T Consensus       289 ~~~GV~i~~~~~V~~I~~~~~~~v~v~~~~~~~~i~aD~VlvA~Gr~Pn  337 (561)
T PTZ00058        289 KKNNINIITHANVEEIEKVKEKNLTIYLSDGRKYEHFDYVIYCVGRSPN  337 (561)
T ss_pred             HHCCCEEEeCCEEEEEEecCCCcEEEEECCCCEEEECCEEEECcCCCCC
Confidence            888999999999999976432   233333 457999999999998775

>PF13450 NAD_binding_8: NAD(P)-binding Rossmann-like domain; PDB: 3KA7_A 1V0J_D 3INR_B 3KYB_B 3GF4_A 2BI8_A 3INT_B 1WAM_A 2BI7_A 3MJ4_G

Probab=97.98  E-value=9.5e-06  Score=59.02  Aligned_cols=32  Identities=25%  Similarity=0.331  Sum_probs=28.6

Q ss_pred             EEcCcHHHHHHHHHHHHcCCCCCcEEEEcCCCCCC
Q 012165           56 IVGGGNAAGYAARTFVEHGMADGRLCIVSKEAYAP   90 (469)
Q Consensus        56 IIGgG~AGl~aA~~L~~~g~~~~~V~vie~~~~~~   90 (469)
                      |||||++||++|..|++.|+   +|+|+|+.+...
T Consensus         1 IiGaG~sGl~aA~~L~~~g~---~v~v~E~~~~~G   32 (68)
T PF13450_consen    1 IIGAGISGLAAAYYLAKAGY---RVTVFEKNDRLG   32 (68)
T ss_dssp             EES-SHHHHHHHHHHHHTTS---EEEEEESSSSSS
T ss_pred             CEeeCHHHHHHHHHHHHCCC---cEEEEecCcccC
Confidence            89999999999999999987   899999998764

...

>TIGR00136 gidA glucose-inhibited division protein A

Probab=97.96  E-value=2.2e-05  Score=80.89  Aligned_cols=34  Identities=21%  Similarity=0.344  Sum_probs=30.7

Q ss_pred             CcEEEEcCcHHHHHHHHHHHHcCCCCCcEEEEcCCCC
Q 012165           52 REFVIVGGGNAAGYAARTFVEHGMADGRLCIVSKEAY   88 (469)
Q Consensus        52 ~~vvIIGgG~AGl~aA~~L~~~g~~~~~V~vie~~~~   88 (469)
                      +||+|||||+||+.+|..+++.|.   +++|+++...
T Consensus         1 yDViVIGaG~AGl~aA~ala~~G~---~v~Lie~~~~   34 (617)
T TIGR00136         1 FDVIVIGGGHAGCEAALAAARMGA---KTLLLTLNLD   34 (617)
T ss_pred             CeEEEECccHHHHHHHHHHHHCCC---CEEEEecccc
Confidence            589999999999999999999987   7999998643

GidA, the longer of two forms of GidA-related proteins, appears to be present in all complete eubacterial genomes so far, as well as Saccharomyces cerevisiae. A subset of these organisms have a closely related protein. GidA is absent in the Archaea. It appears to act with MnmE, in an alpha2/beta2 heterotetramer, in the 5-carboxymethylaminomethyl modification of uridine 34 in certain tRNAs. The shorter, related protein, previously called gid or gidA(S), is now called TrmFO (see model TIGR00137).

>COG2509 Uncharacterized FAD-dependent dehydrogenases [General function prediction only]

Probab=97.96  E-value=0.00021  Score=69.89  Aligned_cols=54  Identities=24%  Similarity=0.388  Sum_probs=48.0

Q ss_pred             eeHHHHHHcCcEEEcCCeEEEEEeCCCCcEEEEEcCCCCEEeCCEEEEccCCccC
Q 012165          235 RYEQLYQQNGVKFVKGASIKNLEAGSDGRVAAVKLEDGSTIDADTIVIGIGAKPT  289 (469)
Q Consensus       235 ~~~~~l~~~gV~~~~~~~v~~i~~~~~~~v~~v~~~~g~~i~~D~vi~a~G~~p~  289 (469)
                      .+.+.+++.|++++++++|.+++.. ++.+..|.+++|.++++|.||+|+|+...
T Consensus       178 ni~~~l~~~G~ei~f~t~VeDi~~~-~~~~~~v~~~~g~~i~~~~vvlA~Grsg~  231 (486)
T COG2509         178 NIREYLESLGGEIRFNTEVEDIEIE-DNEVLGVKLTKGEEIEADYVVLAPGRSGR  231 (486)
T ss_pred             HHHHHHHhcCcEEEeeeEEEEEEec-CCceEEEEccCCcEEecCEEEEccCcchH
Confidence            5678899999999999999999864 55567899999999999999999999876

>PRK06467 dihydrolipoamide dehydrogenase; Reviewed

Probab=97.93  E-value=3e-05  Score=79.50  Aligned_cols=97  Identities=16%  Similarity=0.301  Sum_probs=68.6

Q ss_pred             CCcEEEEcCcHHHHHHHHHHHHcCCCCCcEEEEcCCCCCCCCCCCCcccccCCCCCCCCCCCCCccccCCCCCCCCHhHH
Q 012165           51 NREFVIVGGGNAAGYAARTFVEHGMADGRLCIVSKEAYAPYERPALTKGYLFPLDKKPARLPGFHTCVGSGGERQTPEWY  130 (469)
Q Consensus        51 ~~~vvIIGgG~AGl~aA~~L~~~g~~~~~V~vie~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  130 (469)
                      .++++|||||+.|+.+|..|++.|.   +|+||+..+...   |.+        +...              .....+.+
T Consensus       174 ~~~vvIiGgG~iG~E~A~~l~~~G~---~Vtlv~~~~~il---~~~--------d~~~--------------~~~~~~~l  225 (471)
T PRK06467        174 PKRLLVMGGGIIGLEMGTVYHRLGS---EVDVVEMFDQVI---PAA--------DKDI--------------VKVFTKRI  225 (471)
T ss_pred             CCeEEEECCCHHHHHHHHHHHHcCC---CEEEEecCCCCC---CcC--------CHHH--------------HHHHHHHH
Confidence            4799999999999999999999986   799999776421   000        0000              01233455


Q ss_pred             HHCCcEEEeCCcEEEEeCCCc--EEEeCC--C--eEEEeccEEeccCCCCCc
Q 012165          131 KEKGIEMIYQDPVTSIDIEKQ--TLITNS--G--KLLKYGSLIVATGCTASR  176 (469)
Q Consensus       131 ~~~~i~~~~~~~v~~id~~~~--~v~~~~--g--~~~~yd~lVlAtG~~~~~  176 (469)
                      ++. ++++.++++..+...+.  .+.+.+  +  +++++|.+|+|+|.+|..
T Consensus       226 ~~~-v~i~~~~~v~~i~~~~~~~~v~~~~~~~~~~~i~~D~vi~a~G~~pn~  276 (471)
T PRK06467        226 KKQ-FNIMLETKVTAVEAKEDGIYVTMEGKKAPAEPQRYDAVLVAVGRVPNG  276 (471)
T ss_pred             hhc-eEEEcCCEEEEEEEcCCEEEEEEEeCCCcceEEEeCEEEEeecccccC
Confidence            666 99999999998875433  344433  2  469999999999998763

>PRK04176 ribulose-1,5-biphosphate synthetase; Provisional

Probab=97.93  E-value=0.00018  Score=67.40  Aligned_cols=83  Identities=27%  Similarity=0.353  Sum_probs=64.4

Q ss_pred             CCeEEEEcCChHHHHHHHHHHhCCCeEe----------------------------------------------------
Q 012165          207 AKKVVVVGGGYIGMEVAAAAVGWKLDTT----------------------------------------------------  234 (469)
Q Consensus       207 ~~~vvVvG~G~~g~e~A~~l~~~g~~v~----------------------------------------------------  234 (469)
                      ...|+|||+|+.|+-+|..|++.|.++.                                                    
T Consensus        25 ~~DVvIVGgGpAGl~AA~~la~~G~~V~liEk~~~~Ggg~~~gg~~~~~~~v~~~~~~~l~~~gv~~~~~~~g~~~vd~~  104 (257)
T PRK04176         25 EVDVAIVGAGPSGLTAAYYLAKAGLKVAVFERKLSFGGGMWGGGMLFNKIVVQEEADEILDEFGIRYKEVEDGLYVADSV  104 (257)
T ss_pred             cCCEEEECccHHHHHHHHHHHhCCCeEEEEecCCCCCCccccCccccccccchHHHHHHHHHCCCCceeecCcceeccHH
Confidence            4579999999999999999999887775                                                    


Q ss_pred             ----eeHHHHHHcCcEEEcCCeEEEEEeCCCCcEEEEEcC-----------CCCEEeCCEEEEccCCccC
Q 012165          235 ----RYEQLYQQNGVKFVKGASIKNLEAGSDGRVAAVKLE-----------DGSTIDADTIVIGIGAKPT  289 (469)
Q Consensus       235 ----~~~~~l~~~gV~~~~~~~v~~i~~~~~~~v~~v~~~-----------~g~~i~~D~vi~a~G~~p~  289 (469)
                          .+.+..++.|++++.++.+.++...+++++.++...           +...+.++.||.|+|....
T Consensus       105 ~l~~~L~~~A~~~Gv~I~~~t~V~dl~~~~~g~V~Gvv~~~~~v~~~g~~~~~~~i~Ak~VI~ATG~~a~  174 (257)
T PRK04176        105 EAAAKLAAAAIDAGAKIFNGVSVEDVILREDPRVAGVVINWTPVEMAGLHVDPLTIEAKAVVDATGHDAE  174 (257)
T ss_pred             HHHHHHHHHHHHcCCEEEcCceeceeeEeCCCcEEEEEEccccccccCCCCCcEEEEcCEEEEEeCCCcH
Confidence                233445678999999999999876545466666543           2247999999999997654

>PRK11101 glpA sn-glycerol-3-phosphate dehydrogenase subunit A; Provisional

Probab=97.92  E-value=2.6e-05  Score=81.39  Aligned_cols=36  Identities=25%  Similarity=0.533  Sum_probs=32.6

Q ss_pred             CCCCcEEEEcCcHHHHHHHHHHHHcCCCCCcEEEEcCCC
Q 012165           49 NENREFVIVGGGNAAGYAARTFVEHGMADGRLCIVSKEA   87 (469)
Q Consensus        49 ~~~~~vvIIGgG~AGl~aA~~L~~~g~~~~~V~vie~~~   87 (469)
                      ...+||+|||||..|+++|+.|+++|.   +|+|||+..
T Consensus         4 ~~~~DVvIIGGGi~G~~iA~~La~rG~---~V~LlEk~d   39 (546)
T PRK11101          4 SQETDVIIIGGGATGAGIARDCALRGL---RCILVERHD   39 (546)
T ss_pred             CccccEEEECcCHHHHHHHHHHHHcCC---eEEEEECCC
Confidence            345899999999999999999999987   799999965

>TIGR03140 AhpF alkyl hydroperoxide reductase, F subunit

Probab=97.92  E-value=5.8e-05  Score=78.33  Aligned_cols=83  Identities=28%  Similarity=0.413  Sum_probs=68.1

Q ss_pred             cCCeEEEEcCChHHHHHHHHHHhCCCeEe--------------------------------eeHHHHHHcCcEEEcCCeE
Q 012165          206 KAKKVVVVGGGYIGMEVAAAAVGWKLDTT--------------------------------RYEQLYQQNGVKFVKGASI  253 (469)
Q Consensus       206 ~~~~vvVvG~G~~g~e~A~~l~~~g~~v~--------------------------------~~~~~l~~~gV~~~~~~~v  253 (469)
                      ...+++|||||+.|+.+|..+++.|.+++                                .+.+.+++.|++++.+++|
T Consensus       211 ~~~dVvIIGgGpAGl~AA~~la~~G~~v~li~~~~GG~~~~~~~~~~~~~~~~~~~~~l~~~l~~~l~~~gv~i~~~~~V  290 (515)
T TIGR03140       211 DPYDVLVVGGGPAGAAAAIYAARKGLRTAMVAERIGGQVKDTVGIENLISVPYTTGSQLAANLEEHIKQYPIDLMENQRA  290 (515)
T ss_pred             CCCCEEEECCCHHHHHHHHHHHHCCCcEEEEecCCCCccccCcCcccccccCCCCHHHHHHHHHHHHHHhCCeEEcCCEE
Confidence            35789999999999999999999998886                                2245567789999999999


Q ss_pred             EEEEeCCCCcEEEEEcCCCCEEeCCEEEEccCCccCC
Q 012165          254 KNLEAGSDGRVAAVKLEDGSTIDADTIVIGIGAKPTV  290 (469)
Q Consensus       254 ~~i~~~~~~~v~~v~~~~g~~i~~D~vi~a~G~~p~~  290 (469)
                      .++...+ +. ..+.+++|+.+.+|.+|+|+|..|..
T Consensus       291 ~~I~~~~-~~-~~v~~~~g~~i~~d~lIlAtGa~~~~  325 (515)
T TIGR03140       291 KKIETED-GL-IVVTLESGEVLKAKSVIVATGARWRK  325 (515)
T ss_pred             EEEEecC-Ce-EEEEECCCCEEEeCEEEECCCCCcCC
Confidence            9997543 22 35677888899999999999998753

This enzyme is the partner of the peroxiredoxin (alkyl hydroperoxide reductase) AhpC which contains the peroxide-reactive cysteine. AhpF contains the reductant (NAD(P)H) binding domain (pfam00070) and presumably acts to resolve the disulfide which forms after oxidation of the active site cysteine in AphC. This proteins contains two paired conserved cysteine motifs, CxxCP and CxHCDGP.

>KOG1336 consensus Monodehydroascorbate/ferredoxin reductase [General function prediction only]

Probab=97.91  E-value=2.8e-05  Score=76.18  Aligned_cols=99  Identities=20%  Similarity=0.346  Sum_probs=78.7

Q ss_pred             CCcEEEEcCcHHHHHHHHHHHHcCCCCCcEEEEcCCCCCCCCCCCCcccccCCCCCCCCCCCCCccccCCCCCCCCHhHH
Q 012165           51 NREFVIVGGGNAAGYAARTFVEHGMADGRLCIVSKEAYAPYERPALTKGYLFPLDKKPARLPGFHTCVGSGGERQTPEWY  130 (469)
Q Consensus        51 ~~~vvIIGgG~AGl~aA~~L~~~g~~~~~V~vie~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  130 (469)
                      ...||++|+|+.|+.+|..|+....   +||+|++++.+ ..     . ++.+      .+           .....+++
T Consensus       213 ~~~vV~vG~G~ig~Evaa~l~~~~~---~VT~V~~e~~~-~~-----~-lf~~------~i-----------~~~~~~y~  265 (478)
T KOG1336|consen  213 GGKVVCVGGGFIGMEVAAALVSKAK---SVTVVFPEPWL-LP-----R-LFGP------SI-----------GQFYEDYY  265 (478)
T ss_pred             CceEEEECchHHHHHHHHHHHhcCc---eEEEEccCccc-hh-----h-hhhH------HH-----------HHHHHHHH
Confidence            6789999999999999999999866   89999998763 11     1 1111      11           13457788


Q ss_pred             HHCCcEEEeCCcEEEEeCCC----cEEEeCCCeEEEeccEEeccCCCCCc
Q 012165          131 KEKGIEMIYQDPVTSIDIEK----QTLITNSGKLLKYGSLIVATGCTASR  176 (469)
Q Consensus       131 ~~~~i~~~~~~~v~~id~~~----~~v~~~~g~~~~yd~lVlAtG~~~~~  176 (469)
                      ++++++++.++.+.+++...    ..|.+.+++++++|-||+.+|++|..
T Consensus       266 e~kgVk~~~~t~~s~l~~~~~Gev~~V~l~dg~~l~adlvv~GiG~~p~t  315 (478)
T KOG1336|consen  266 ENKGVKFYLGTVVSSLEGNSDGEVSEVKLKDGKTLEADLVVVGIGIKPNT  315 (478)
T ss_pred             HhcCeEEEEecceeecccCCCCcEEEEEeccCCEeccCeEEEeecccccc
Confidence            99999999999888887654    26788999999999999999999864

>PRK06847 hypothetical protein; Provisional

Probab=97.91  E-value=6.9e-05  Score=74.58  Aligned_cols=82  Identities=28%  Similarity=0.362  Sum_probs=66.5

Q ss_pred             CCeEEEEcCChHHHHHHHHHHhCCCeEe----------------------------------------------------
Q 012165          207 AKKVVVVGGGYIGMEVAAAAVGWKLDTT----------------------------------------------------  234 (469)
Q Consensus       207 ~~~vvVvG~G~~g~e~A~~l~~~g~~v~----------------------------------------------------  234 (469)
                      .++|+|||+|+.|+-+|..|++.|.+++                                                    
T Consensus         4 ~~~V~IVGaG~aGl~~A~~L~~~g~~v~v~E~~~~~~~~g~g~~l~~~~~~~l~~~gl~~~~~~~~~~~~~~~~~~~~g~   83 (375)
T PRK06847          4 VKKVLIVGGGIGGLSAAIALRRAGIAVDLVEIDPEWRVYGAGITLQGNALRALRELGVLDECLEAGFGFDGVDLFDPDGT   83 (375)
T ss_pred             cceEEEECCCHHHHHHHHHHHhCCCCEEEEecCCCCccCCceeeecHHHHHHHHHcCCHHHHHHhCCCccceEEECCCCC
Confidence            5689999999999999999999988876                                                    


Q ss_pred             ----------------------------eeHHHHHHcCcEEEcCCeEEEEEeCCCCcEEEEEcCCCCEEeCCEEEEccCC
Q 012165          235 ----------------------------RYEQLYQQNGVKFVKGASIKNLEAGSDGRVAAVKLEDGSTIDADTIVIGIGA  286 (469)
Q Consensus       235 ----------------------------~~~~~l~~~gV~~~~~~~v~~i~~~~~~~v~~v~~~~g~~i~~D~vi~a~G~  286 (469)
                                                  .+.+.+++.|++++.++++++++..++ .+ .+.+.+|+++.+|.||.|.|.
T Consensus        84 ~~~~~~~~~~~~~~~~~~~~i~r~~l~~~L~~~~~~~gv~v~~~~~v~~i~~~~~-~~-~v~~~~g~~~~ad~vI~AdG~  161 (375)
T PRK06847         84 LLAELPTPRLAGDDLPGGGGIMRPALARILADAARAAGADVRLGTTVTAIEQDDD-GV-TVTFSDGTTGRYDLVVGADGL  161 (375)
T ss_pred             EEEecCcccccccCCCCcccCcHHHHHHHHHHHHHHhCCEEEeCCEEEEEEEcCC-EE-EEEEcCCCEEEcCEEEECcCC
Confidence                                        122334457999999999999986433 33 577889999999999999998


Q ss_pred             ccCC
Q 012165          287 KPTV  290 (469)
Q Consensus       287 ~p~~  290 (469)
                      .+..
T Consensus       162 ~s~~  165 (375)
T PRK06847        162 YSKV  165 (375)
T ss_pred             Ccch
Confidence            7754

>PRK10262 thioredoxin reductase; Provisional

Probab=97.90  E-value=3.4e-05  Score=75.09  Aligned_cols=97  Identities=15%  Similarity=0.197  Sum_probs=70.3

Q ss_pred             CCCcEEEEcCcHHHHHHHHHHHHcCCCCCcEEEEcCCCCCCCCCCCCcccccCCCCCCCCCCCCCccccCCCCCCCCHhH
Q 012165           50 ENREFVIVGGGNAAGYAARTFVEHGMADGRLCIVSKEAYAPYERPALTKGYLFPLDKKPARLPGFHTCVGSGGERQTPEW  129 (469)
Q Consensus        50 ~~~~vvIIGgG~AGl~aA~~L~~~g~~~~~V~vie~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  129 (469)
                      ..++++|||+|..|+.+|..|++.+.   +|+++++.+.+... +.+                          .....+.
T Consensus       145 ~g~~vvVvGgG~~g~e~A~~l~~~~~---~Vtlv~~~~~~~~~-~~~--------------------------~~~~~~~  194 (321)
T PRK10262        145 RNQKVAVIGGGNTAVEEALYLSNIAS---EVHLIHRRDGFRAE-KIL--------------------------IKRLMDK  194 (321)
T ss_pred             CCCEEEEECCCHHHHHHHHHHHhhCC---EEEEEEECCccCCC-HHH--------------------------HHHHHhh
Confidence            35799999999999999999999875   79999876542111 000                          0122344


Q ss_pred             HHHCCcEEEeCCcEEEEeCCCc---EEEeCCC------eEEEeccEEeccCCCCCc
Q 012165          130 YKEKGIEMIYQDPVTSIDIEKQ---TLITNSG------KLLKYGSLIVATGCTASR  176 (469)
Q Consensus       130 ~~~~~i~~~~~~~v~~id~~~~---~v~~~~g------~~~~yd~lVlAtG~~~~~  176 (469)
                      +++.+++++.+..+.++..+..   .|++.++      +++++|.||+++|.+|..
T Consensus       195 l~~~gV~i~~~~~v~~v~~~~~~~~~v~~~~~~~~~~~~~i~~D~vv~a~G~~p~~  250 (321)
T PRK10262        195 VENGNIILHTNRTLEEVTGDQMGVTGVRLRDTQNSDNIESLDVAGLFVAIGHSPNT  250 (321)
T ss_pred             ccCCCeEEEeCCEEEEEEcCCccEEEEEEEEcCCCCeEEEEECCEEEEEeCCccCh
Confidence            5678999999999999987642   3444322      369999999999988753

>TIGR01813 flavo_cyto_c flavocytochrome c

Probab=97.88  E-value=7.5e-05  Score=76.04  Aligned_cols=34  Identities=26%  Similarity=0.322  Sum_probs=31.0

Q ss_pred             cEEEEcCcHHHHHHHHHHHHcC-CCCCcEEEEcCCCCC
Q 012165           53 EFVIVGGGNAAGYAARTFVEHG-MADGRLCIVSKEAYA   89 (469)
Q Consensus        53 ~vvIIGgG~AGl~aA~~L~~~g-~~~~~V~vie~~~~~   89 (469)
                      ||||||+|.||++||.++++.| .   +|+|+|+.+..
T Consensus         1 DVvVVG~G~AGl~AA~~aa~~G~~---~V~vlEk~~~~   35 (439)
T TIGR01813         1 DVVVVGSGFAGLSAALSAKKAGAA---NVVLLEKMPVI   35 (439)
T ss_pred             CEEEECCCHHHHHHHHHHHHcCCc---cEEEEecCCCC
Confidence            7999999999999999999998 6   79999998753

This model describes a family of redox proteins related to the succinate dehydrogenases and fumarate reductases of E. coli, mitochondria, and other well-characterized systems. A member of this family from Shewanella frigidimarina NCIMB400 is characterized as a water-soluble periplasmic protein with four heme groups, a non-covalently bound FAD, and essentially unidirectional fumarate reductase activity. At least seven distinct members of this family are found in Shewanella oneidensis, a species able to use a wide variety of pathways for respiraton.

>PRK07804 L-aspartate oxidase; Provisional

Probab=97.87  E-value=5.4e-05  Score=78.93  Aligned_cols=38  Identities=32%  Similarity=0.363  Sum_probs=33.6

Q ss_pred             CCCCCcEEEEcCcHHHHHHHHHHHHcCCCCCcEEEEcCCCC
Q 012165           48 ANENREFVIVGGGNAAGYAARTFVEHGMADGRLCIVSKEAY   88 (469)
Q Consensus        48 ~~~~~~vvIIGgG~AGl~aA~~L~~~g~~~~~V~vie~~~~   88 (469)
                      ....+||||||+|.||++||.++++.|.   +|+|+|+.+.
T Consensus        13 ~~~~~DVlVIG~G~AGl~AAi~aae~G~---~VilleK~~~   50 (541)
T PRK07804         13 WRDAADVVVVGSGVAGLTAALAARRAGR---RVLVVTKAAL   50 (541)
T ss_pred             cccccCEEEECccHHHHHHHHHHHHcCC---eEEEEEccCC
Confidence            3456899999999999999999999876   7999999764

>PRK08294 phenol 2-monooxygenase; Provisional

Probab=97.86  E-value=7.9e-05  Score=79.04  Aligned_cols=37  Identities=22%  Similarity=0.252  Sum_probs=33.0

Q ss_pred             CCCCcEEEEcCcHHHHHHHHHHHHc-CCCCCcEEEEcCCCC
Q 012165           49 NENREFVIVGGGNAAGYAARTFVEH-GMADGRLCIVSKEAY   88 (469)
Q Consensus        49 ~~~~~vvIIGgG~AGl~aA~~L~~~-g~~~~~V~vie~~~~   88 (469)
                      ...+||+||||||+||++|..|+++ |.   +++|||+.+.
T Consensus        30 ~~~~dVlIVGAGPaGL~lA~~Lar~~Gi---~v~IiE~~~~   67 (634)
T PRK08294         30 PDEVDVLIVGCGPAGLTLAAQLSAFPDI---TTRIVERKPG   67 (634)
T ss_pred             CCCCCEEEECCCHHHHHHHHHHhcCCCC---cEEEEEcCCC
Confidence            4578999999999999999999995 87   7999998864

>PRK06069 sdhA succinate dehydrogenase flavoprotein subunit; Reviewed

Probab=97.86  E-value=4.2e-05  Score=80.44  Aligned_cols=40  Identities=30%  Similarity=0.205  Sum_probs=33.0

Q ss_pred             CCCCcEEEEcCcHHHHHHHHHHHHcCCCCCcEEEEcCCCC
Q 012165           49 NENREFVIVGGGNAAGYAARTFVEHGMADGRLCIVSKEAY   88 (469)
Q Consensus        49 ~~~~~vvIIGgG~AGl~aA~~L~~~g~~~~~V~vie~~~~   88 (469)
                      ...+||+|||+|.||++||.++++.|..+.+|+|+|+.+.
T Consensus         3 ~~~~DVlVVG~G~AGl~AA~~Aa~~G~~~~~V~lleK~~~   42 (577)
T PRK06069          3 VLKYDVVIVGSGLAGLRAAVAAAERSGGKLSVAVVSKTQP   42 (577)
T ss_pred             ceecCEEEECccHHHHHHHHHHHHhCCCCCcEEEEEcccC
Confidence            3457999999999999999999998721138999998764

>COG1635 THI4 Ribulose 1,5-bisphosphate synthetase, converts PRPP to RuBP, flavoprotein [Carbohydrate transport and metabolism]

Probab=97.86  E-value=1.4e-05  Score=70.40  Aligned_cols=37  Identities=22%  Similarity=0.373  Sum_probs=33.4

Q ss_pred             CCcEEEEcCcHHHHHHHHHHHHcCCCCCcEEEEcCCCCCC
Q 012165           51 NREFVIVGGGNAAGYAARTFVEHGMADGRLCIVSKEAYAP   90 (469)
Q Consensus        51 ~~~vvIIGgG~AGl~aA~~L~~~g~~~~~V~vie~~~~~~   90 (469)
                      .-||+|||+|||||+||++|++.|.   +|+++|+...++
T Consensus        30 esDViIVGaGPsGLtAAyyLAk~g~---kV~i~E~~ls~G   66 (262)
T COG1635          30 ESDVIIVGAGPSGLTAAYYLAKAGL---KVAIFERKLSFG   66 (262)
T ss_pred             hccEEEECcCcchHHHHHHHHhCCc---eEEEEEeecccC
Confidence            4699999999999999999999987   899999987654

>PTZ00153 lipoamide dehydrogenase; Provisional

Probab=97.85  E-value=3.7e-05  Score=81.15  Aligned_cols=97  Identities=21%  Similarity=0.164  Sum_probs=67.5

Q ss_pred             CCcEEEEcCcHHHHHHHHHHHHcCCCCCcEEEEcCCCCCCCCCCCCcccccCCCCCCCCCCCCCccccCCCCCCCCHhH-
Q 012165           51 NREFVIVGGGNAAGYAARTFVEHGMADGRLCIVSKEAYAPYERPALTKGYLFPLDKKPARLPGFHTCVGSGGERQTPEW-  129 (469)
Q Consensus        51 ~~~vvIIGgG~AGl~aA~~L~~~g~~~~~V~vie~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-  129 (469)
                      .++++|||||+.|+..|..|++.|.   +|++|+..+...   |.+        +....              ...... 
T Consensus       312 pk~VvIVGgG~iGvE~A~~l~~~G~---eVTLIe~~~~ll---~~~--------d~eis--------------~~l~~~l  363 (659)
T PTZ00153        312 QNYMGIVGMGIIGLEFMDIYTALGS---EVVSFEYSPQLL---PLL--------DADVA--------------KYFERVF  363 (659)
T ss_pred             CCceEEECCCHHHHHHHHHHHhCCC---eEEEEeccCccc---ccC--------CHHHH--------------HHHHHHH
Confidence            4689999999999999999999886   899999876421   000        00000              112222 


Q ss_pred             HHHCCcEEEeCCcEEEEeCCC--c--EEEeC-------CC--------eEEEeccEEeccCCCCC
Q 012165          130 YKEKGIEMIYQDPVTSIDIEK--Q--TLITN-------SG--------KLLKYGSLIVATGCTAS  175 (469)
Q Consensus       130 ~~~~~i~~~~~~~v~~id~~~--~--~v~~~-------~g--------~~~~yd~lVlAtG~~~~  175 (469)
                      +++.+|+++.++.|..++..+  .  .+.+.       ++        +++++|.|++|||.+|.
T Consensus       364 l~~~GV~I~~~~~V~~I~~~~~~~~v~v~~~~~~~~~~~~~~~~~~~~~~i~aD~VlvAtGr~Pn  428 (659)
T PTZ00153        364 LKSKPVRVHLNTLIEYVRAGKGNQPVIIGHSERQTGESDGPKKNMNDIKETYVDSCLVATGRKPN  428 (659)
T ss_pred             hhcCCcEEEcCCEEEEEEecCCceEEEEEEeccccccccccccccccceEEEcCEEEEEECcccC
Confidence            356899999999999997654  2  23222       11        36999999999998876

>PRK15317 alkyl hydroperoxide reductase subunit F; Provisional

Probab=97.84  E-value=9.1e-05  Score=76.95  Aligned_cols=82  Identities=27%  Similarity=0.377  Sum_probs=67.7

Q ss_pred             CCeEEEEcCChHHHHHHHHHHhCCCeEe--------------------------------eeHHHHHHcCcEEEcCCeEE
Q 012165          207 AKKVVVVGGGYIGMEVAAAAVGWKLDTT--------------------------------RYEQLYQQNGVKFVKGASIK  254 (469)
Q Consensus       207 ~~~vvVvG~G~~g~e~A~~l~~~g~~v~--------------------------------~~~~~l~~~gV~~~~~~~v~  254 (469)
                      ..+++|||||+.|+.+|.++++.|.++.                                .+.+.+++.|++++.++++.
T Consensus       211 ~~dvvIIGgGpaGl~aA~~la~~G~~v~li~~~~GG~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~gv~i~~~~~V~  290 (517)
T PRK15317        211 PYDVLVVGGGPAGAAAAIYAARKGIRTGIVAERFGGQVLDTMGIENFISVPETEGPKLAAALEEHVKEYDVDIMNLQRAS  290 (517)
T ss_pred             CCCEEEECCCHHHHHHHHHHHHCCCcEEEEecCCCCeeeccCcccccCCCCCCCHHHHHHHHHHHHHHCCCEEEcCCEEE
Confidence            4589999999999999999999988775                                23566778899999999999


Q ss_pred             EEEeCCCCcEEEEEcCCCCEEeCCEEEEccCCccCC
Q 012165          255 NLEAGSDGRVAAVKLEDGSTIDADTIVIGIGAKPTV  290 (469)
Q Consensus       255 ~i~~~~~~~v~~v~~~~g~~i~~D~vi~a~G~~p~~  290 (469)
                      ++...+ +. ..+.+.+|+++.+|.||+|+|.+|..
T Consensus       291 ~I~~~~-~~-~~V~~~~g~~i~a~~vViAtG~~~r~  324 (517)
T PRK15317        291 KLEPAA-GL-IEVELANGAVLKAKTVILATGARWRN  324 (517)
T ss_pred             EEEecC-Ce-EEEEECCCCEEEcCEEEECCCCCcCC
Confidence            998643 22 35677888899999999999998753

>PRK09078 sdhA succinate dehydrogenase flavoprotein subunit; Reviewed

Probab=97.84  E-value=5.8e-05  Score=79.57  Aligned_cols=35  Identities=26%  Similarity=0.391  Sum_probs=31.7

Q ss_pred             CCCcEEEEcCcHHHHHHHHHHHHcCCCCCcEEEEcCCC
Q 012165           50 ENREFVIVGGGNAAGYAARTFVEHGMADGRLCIVSKEA   87 (469)
Q Consensus        50 ~~~~vvIIGgG~AGl~aA~~L~~~g~~~~~V~vie~~~   87 (469)
                      ..+||||||+|.||++||.++++.|.   +|+|||+..
T Consensus        11 ~~~DVvVIG~G~AGl~AAl~Aa~~G~---~V~lveK~~   45 (598)
T PRK09078         11 HKYDVVVVGAGGAGLRATLGMAEAGL---KTACITKVF   45 (598)
T ss_pred             cccCEEEECccHHHHHHHHHHHHcCC---cEEEEEccC
Confidence            45899999999999999999999876   799999875

>PRK07538 hypothetical protein; Provisional

Probab=97.84  E-value=5.4e-05  Score=76.47  Aligned_cols=33  Identities=21%  Similarity=0.351  Sum_probs=30.8

Q ss_pred             cEEEEcCcHHHHHHHHHHHHcCCCCCcEEEEcCCCC
Q 012165           53 EFVIVGGGNAAGYAARTFVEHGMADGRLCIVSKEAY   88 (469)
Q Consensus        53 ~vvIIGgG~AGl~aA~~L~~~g~~~~~V~vie~~~~   88 (469)
                      ||+|||||+||+++|..|++.|+   +|+|+|+.+.
T Consensus         2 dV~IVGaG~aGl~~A~~L~~~G~---~v~v~E~~~~   34 (413)
T PRK07538          2 KVLIAGGGIGGLTLALTLHQRGI---EVVVFEAAPE   34 (413)
T ss_pred             eEEEECCCHHHHHHHHHHHhCCC---cEEEEEcCCc
Confidence            79999999999999999999998   7999999764

>PRK08205 sdhA succinate dehydrogenase flavoprotein subunit; Reviewed

Probab=97.83  E-value=7.2e-05  Score=78.75  Aligned_cols=34  Identities=29%  Similarity=0.284  Sum_probs=30.0

Q ss_pred             CCCcEEEEcCcHHHHHHHHHHHHcCCCCCcEEEEcCCC
Q 012165           50 ENREFVIVGGGNAAGYAARTFVEHGMADGRLCIVSKEA   87 (469)
Q Consensus        50 ~~~~vvIIGgG~AGl~aA~~L~~~g~~~~~V~vie~~~   87 (469)
                      ..+||||||+|.||++||.++++. .   +|+|+|+.+
T Consensus         4 ~~~DVlVIG~G~AGl~AAl~aa~~-~---~VilleK~~   37 (583)
T PRK08205          4 HRYDVVIVGAGGAGMRAAIEAGPR-A---RTAVLTKLY   37 (583)
T ss_pred             eeccEEEECccHHHHHHHHHHHhC-C---CEEEEeCCC
Confidence            457999999999999999999875 4   799999975

>PLN02546 glutathione reductase

Probab=97.83  E-value=5.8e-05  Score=78.56  Aligned_cols=99  Identities=21%  Similarity=0.258  Sum_probs=69.9

Q ss_pred             CCCcEEEEcCcHHHHHHHHHHHHcCCCCCcEEEEcCCCCCCCCCCCCcccccCCCCCCCCCCCCCccccCCCCCCCCHhH
Q 012165           50 ENREFVIVGGGNAAGYAARTFVEHGMADGRLCIVSKEAYAPYERPALTKGYLFPLDKKPARLPGFHTCVGSGGERQTPEW  129 (469)
Q Consensus        50 ~~~~vvIIGgG~AGl~aA~~L~~~g~~~~~V~vie~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  129 (469)
                      ..++|+|||||+.|+..|..|.+.+.   +|+|+++.+...   +.+        +...              .....+.
T Consensus       251 ~~k~V~VIGgG~iGvE~A~~L~~~g~---~Vtlv~~~~~il---~~~--------d~~~--------------~~~l~~~  302 (558)
T PLN02546        251 KPEKIAIVGGGYIALEFAGIFNGLKS---DVHVFIRQKKVL---RGF--------DEEV--------------RDFVAEQ  302 (558)
T ss_pred             cCCeEEEECCCHHHHHHHHHHHhcCC---eEEEEEeccccc---ccc--------CHHH--------------HHHHHHH
Confidence            35799999999999999999998875   899998765320   000        0000              0123466


Q ss_pred             HHHCCcEEEeCCcEEEEeCC-Cc--EEEeCCCeEEEeccEEeccCCCCCc
Q 012165          130 YKEKGIEMIYQDPVTSIDIE-KQ--TLITNSGKLLKYGSLIVATGCTASR  176 (469)
Q Consensus       130 ~~~~~i~~~~~~~v~~id~~-~~--~v~~~~g~~~~yd~lVlAtG~~~~~  176 (469)
                      +++.||+++.++.+..+... +.  .+.+.+++...+|.+++|+|.+|..
T Consensus       303 L~~~GV~i~~~~~v~~i~~~~~g~v~v~~~~g~~~~~D~Viva~G~~Pnt  352 (558)
T PLN02546        303 MSLRGIEFHTEESPQAIIKSADGSLSLKTNKGTVEGFSHVMFATGRKPNT  352 (558)
T ss_pred             HHHCCcEEEeCCEEEEEEEcCCCEEEEEECCeEEEecCEEEEeeccccCC
Confidence            78899999999999888642 22  3444555545589999999988763

>PRK06452 sdhA succinate dehydrogenase flavoprotein subunit; Reviewed

Probab=97.82  E-value=7e-05  Score=78.49  Aligned_cols=35  Identities=26%  Similarity=0.445  Sum_probs=31.8

Q ss_pred             CCCcEEEEcCcHHHHHHHHHHHHcCCCCCcEEEEcCCC
Q 012165           50 ENREFVIVGGGNAAGYAARTFVEHGMADGRLCIVSKEA   87 (469)
Q Consensus        50 ~~~~vvIIGgG~AGl~aA~~L~~~g~~~~~V~vie~~~   87 (469)
                      ..+||||||+|.||++||.++++.|.   +|+|+|+.+
T Consensus         4 ~~~DVvVVG~G~AGl~AAl~Aae~G~---~V~lveK~~   38 (566)
T PRK06452          4 IEYDAVVIGGGLAGLMSAHEIASAGF---KVAVISKVF   38 (566)
T ss_pred             ccCcEEEECccHHHHHHHHHHHHCCC---cEEEEEccC
Confidence            45799999999999999999999876   799999875

>PF01946 Thi4: Thi4 family; PDB: 1RP0_A 3FPZ_B 3JSK_K

Probab=97.82  E-value=1.6e-05  Score=70.29  Aligned_cols=38  Identities=21%  Similarity=0.351  Sum_probs=30.6

Q ss_pred             CCCcEEEEcCcHHHHHHHHHHHHcCCCCCcEEEEcCCCCCC
Q 012165           50 ENREFVIVGGGNAAGYAARTFVEHGMADGRLCIVSKEAYAP   90 (469)
Q Consensus        50 ~~~~vvIIGgG~AGl~aA~~L~~~g~~~~~V~vie~~~~~~   90 (469)
                      ..+||+|||||||||+||.+|++.|+   +|+++|+...++
T Consensus        16 ~~~DV~IVGaGpaGl~aA~~La~~g~---kV~v~E~~~~~G   53 (230)
T PF01946_consen   16 LEYDVAIVGAGPAGLTAAYYLAKAGL---KVAVIERKLSPG   53 (230)
T ss_dssp             TEESEEEE--SHHHHHHHHHHHHHTS----EEEEESSSS-B
T ss_pred             ccCCEEEECCChhHHHHHHHHHHCCC---eEEEEecCCCCC
Confidence            45899999999999999999999988   799999986543

>PF07992 Pyr_redox_2: Pyridine nucleotide-disulphide oxidoreductase; InterPro: IPR023753 FAD flavoproteins belonging to the family of pyridine nucleotide-disulphide oxidoreductases (glutathione reductase, trypanothione reductase, lipoamide dehydrogenase, mercuric reductase, thioredoxin reductase, alkyl hydroperoxide reductase) share sequence similarity with a number of other flavoprotein oxidoreductases, in particular with ferredoxin-NAD+ reductases involved in oxidative metabolism of a variety of hydrocarbons (rubredoxin reductase, putidaredoxin reductase, terpredoxin reductase, ferredoxin-NAD+ reductase components of benzene 1,2-dioxygenase, toluene 1,2-dioxygenase, chlorobenzene dioxygenase, biphenyl dioxygenase), NADH oxidase and NADH peroxidase [, , ]

Probab=97.82  E-value=3.5e-05  Score=69.30  Aligned_cols=87  Identities=24%  Similarity=0.419  Sum_probs=65.6

Q ss_pred             eEEEEcCChHHHHHHHHHHhCCCeEe----------------------------eeH-----HH---HHHcCcEEEcCCe
Q 012165          209 KVVVVGGGYIGMEVAAAAVGWKLDTT----------------------------RYE-----QL---YQQNGVKFVKGAS  252 (469)
Q Consensus       209 ~vvVvG~G~~g~e~A~~l~~~g~~v~----------------------------~~~-----~~---l~~~gV~~~~~~~  252 (469)
                      +|+|||||+.|+.+|..|++.+.++.                            ...     +.   +...+++++.+.+
T Consensus         1 ~vvIIGgG~aGl~aA~~l~~~~~~v~ii~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~   80 (201)
T PF07992_consen    1 DVVIIGGGPAGLSAALELARPGAKVLIIEKSPGTPYNSGCIPSPLLVEIAPHRHEFLPARLFKLVDQLKNRGVEIRLNAK   80 (201)
T ss_dssp             EEEEESSSHHHHHHHHHHHHTTSEEEEESSSSHHHHHHSHHHHHHHHHHHHHHHHHHHHHHGHHHHHHHHHTHEEEHHHT
T ss_pred             CEEEEecHHHHHHHHHHHhcCCCeEEEEecccccccccccccccccccccccccccccccccccccccccceEEEeeccc
Confidence            58999999999999999999988886                            111     22   3678999999999


Q ss_pred             EEEEEeCCCC------cEEEEEcCCCCEEeCCEEEEccCCccCCchhhh
Q 012165          253 IKNLEAGSDG------RVAAVKLEDGSTIDADTIVIGIGAKPTVSPFER  295 (469)
Q Consensus       253 v~~i~~~~~~------~v~~v~~~~g~~i~~D~vi~a~G~~p~~~~~~~  295 (469)
                      +.+++.....      .+......++.++.+|.+|+|+|..|+...++.
T Consensus        81 v~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~d~lviAtG~~~~~~~i~g  129 (201)
T PF07992_consen   81 VVSIDPESKRVVCPAVTIQVVETGDGREIKYDYLVIATGSRPRTPNIPG  129 (201)
T ss_dssp             EEEEEESTTEEEETCEEEEEEETTTEEEEEEEEEEEESTEEEEEESSTT
T ss_pred             cccccccccccccCcccceeeccCCceEecCCeeeecCccccceeecCC
Confidence            9999864331      122234556778999999999999887554443

Comparison of the crystal structures of human glutathione reductase and Escherichia coli thioredoxin reductase reveals different locations of their active sites, suggesting that the enzymes diverged from an ancestral FAD/NAD(P)H reductase and acquired their disulphide reductase activities independently []. Despite functional similarities, oxidoreductases of this family show no sequence similarity with adrenodoxin reductases [] and flavoprotein pyridine nucleotide cytochrome reductases (FPNCR) []. Assuming that disulphide reductase activity emerged later, during divergent evolution, the family can be referred to as FAD-dependent pyridine nucleotide reductases, FADPNR. To date, 3D structures of glutathione reductase [], thioredoxin reductase [], mercuric reductase [], lipoamide dehydrogenase [], trypanothione reductase [] and NADH peroxidase [] have been solved. The enzymes share similar tertiary structures based on a doubly-wound alpha/beta fold, but the relative orientations of their FAD- and NAD(P)H-binding domains may vary significantly. By contrast with the FPNCR family, the folds of the FAD- and NAD(P)H-binding domains are similar, suggesting that the domains evolved by gene duplication []. This entry describes the FAD binding domain which has a nested NADH binding domain and is found in both class I and class II oxidoreductases. ; GO: 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 3IC9_A 1Q1W_A 3LB8_A 1Q1R_B 3GD4_A 1GV4_A 3GD3_A 2EQ9_E 2EQ6_B 2EQ8_E ....

>KOG2495 consensus NADH-dehydrogenase (ubiquinone) [Energy production and conversion]

Probab=97.82  E-value=5.8e-06  Score=79.57  Aligned_cols=100  Identities=22%  Similarity=0.283  Sum_probs=71.8

Q ss_pred             CCcEEEEcCcHHHHHHHHHHHHcC-----------CCCCcEEEEcCCCCCCCCCCCCcccccCCCCCCCCCCCCCccccC
Q 012165           51 NREFVIVGGGNAAGYAARTFVEHG-----------MADGRLCIVSKEAYAPYERPALTKGYLFPLDKKPARLPGFHTCVG  119 (469)
Q Consensus        51 ~~~vvIIGgG~AGl~aA~~L~~~g-----------~~~~~V~vie~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~  119 (469)
                      .-++|||||||.|+..|.+|...-           ..+.+||+||..++..   +.+        +   .++        
T Consensus       218 lLh~VVVGGGPTGVEFAaEL~Dfi~~Dl~k~yp~l~~~i~vtLiEA~d~iL---~mF--------d---krl--------  275 (491)
T KOG2495|consen  218 LLHFVVVGGGPTGVEFAAELADFIPEDLRKIYPELKKDIKVTLIEAADHIL---NMF--------D---KRL--------  275 (491)
T ss_pred             eEEEEEECCCCcceeehHHHHHHHHHHHHHhhhcchhheEEEeeccchhHH---HHH--------H---HHH--------
Confidence            357999999999999999998631           1245789998876420   000        0   011        


Q ss_pred             CCCCCCCHhHHHHCCcEEEeCCcEEEEeCCCcEEEeCCC--eEEEeccEEeccCCCCC
Q 012165          120 SGGERQTPEWYKEKGIEMIYQDPVTSIDIEKQTLITNSG--KLLKYGSLIVATGCTAS  175 (469)
Q Consensus       120 ~~~~~~~~~~~~~~~i~~~~~~~v~~id~~~~~v~~~~g--~~~~yd~lVlAtG~~~~  175 (469)
                         .....+.+.+.+|++..++.|..++.+.-.+.+.+|  ++++|.-||.|||..++
T Consensus       276 ---~~yae~~f~~~~I~~~~~t~Vk~V~~~~I~~~~~~g~~~~iPYG~lVWatG~~~r  330 (491)
T KOG2495|consen  276 ---VEYAENQFVRDGIDLDTGTMVKKVTEKTIHAKTKDGEIEEIPYGLLVWATGNGPR  330 (491)
T ss_pred             ---HHHHHHHhhhccceeecccEEEeecCcEEEEEcCCCceeeecceEEEecCCCCCc
Confidence               123456678889999999899888776655555555  47999999999998876

>PRK07057 sdhA succinate dehydrogenase flavoprotein subunit; Reviewed

Probab=97.81  E-value=8.1e-05  Score=78.40  Aligned_cols=36  Identities=25%  Similarity=0.398  Sum_probs=32.0

Q ss_pred             CCCCcEEEEcCcHHHHHHHHHHHHcCCCCCcEEEEcCCC
Q 012165           49 NENREFVIVGGGNAAGYAARTFVEHGMADGRLCIVSKEA   87 (469)
Q Consensus        49 ~~~~~vvIIGgG~AGl~aA~~L~~~g~~~~~V~vie~~~   87 (469)
                      ...+||||||+|.||++||.++++.|.   +|+|||+..
T Consensus        10 ~~~~DVlVIG~G~AGl~AAi~Aa~~G~---~V~vleK~~   45 (591)
T PRK07057         10 RRKFDVVIVGAGGSGMRASLQLARAGL---SVAVLSKVF   45 (591)
T ss_pred             cccCCEEEECccHHHHHHHHHHHHCCC---cEEEEeccC
Confidence            345799999999999999999999876   799999974

>TIGR01812 sdhA_frdA_Gneg succinate dehydrogenase or fumarate reductase, flavoprotein subunitGram-negative/mitochondrial subgroup

Probab=97.81  E-value=5.9e-05  Score=79.31  Aligned_cols=33  Identities=33%  Similarity=0.357  Sum_probs=30.3

Q ss_pred             cEEEEcCcHHHHHHHHHHHHcCCCCCcEEEEcCCCC
Q 012165           53 EFVIVGGGNAAGYAARTFVEHGMADGRLCIVSKEAY   88 (469)
Q Consensus        53 ~vvIIGgG~AGl~aA~~L~~~g~~~~~V~vie~~~~   88 (469)
                      ||||||+|.||++||..+++.|.   +|+|+|+.+.
T Consensus         1 DVlVVG~G~AGl~AA~~aae~G~---~V~lleK~~~   33 (566)
T TIGR01812         1 DVVIVGAGLAGLRAAVEAAKAGL---NTAVISKVYP   33 (566)
T ss_pred             CEEEECccHHHHHHHHHHHHCCC---cEEEEeccCC
Confidence            79999999999999999999986   7999999764

This model represents the succinate dehydrogenase flavoprotein subunit as found in Gram-negative bacteria, mitochondria, and some Archaea. Mitochondrial forms interact with ubiquinone and are designated EC 1.3.5.1, but can be degraded to 1.3.99.1. Some isozymes in E. coli and other species run primarily in the opposite direction and are designated fumarate reductase.

>PRK07573 sdhA succinate dehydrogenase flavoprotein subunit; Reviewed

Probab=97.80  E-value=0.00012  Score=77.62  Aligned_cols=35  Identities=26%  Similarity=0.348  Sum_probs=31.3

Q ss_pred             CCCcEEEEcCcHHHHHHHHHHHHcCCCCCcEEEEcCCC
Q 012165           50 ENREFVIVGGGNAAGYAARTFVEHGMADGRLCIVSKEA   87 (469)
Q Consensus        50 ~~~~vvIIGgG~AGl~aA~~L~~~g~~~~~V~vie~~~   87 (469)
                      ..+||||||+|.||++||.++++.|.   +|+|||+..
T Consensus        34 ~~~DVlVVG~G~AGl~AAi~Aae~G~---~VilieK~~   68 (640)
T PRK07573         34 RKFDVIVVGTGLAGASAAATLGELGY---NVKVFCYQD   68 (640)
T ss_pred             cccCEEEECccHHHHHHHHHHHHcCC---cEEEEecCC
Confidence            45799999999999999999999887   799999754

>PRK09231 fumarate reductase flavoprotein subunit; Validated

Probab=97.79  E-value=7.7e-05  Score=78.42  Aligned_cols=38  Identities=24%  Similarity=0.251  Sum_probs=32.3

Q ss_pred             CCCcEEEEcCcHHHHHHHHHHHHcCCCCCcEEEEcCCCC
Q 012165           50 ENREFVIVGGGNAAGYAARTFVEHGMADGRLCIVSKEAY   88 (469)
Q Consensus        50 ~~~~vvIIGgG~AGl~aA~~L~~~g~~~~~V~vie~~~~   88 (469)
                      ..+||||||+|.||++||.++++.+. ..+|+|+|+...
T Consensus         3 ~~~DVlVVG~G~AGl~AAi~Aa~~g~-g~~V~lleK~~~   40 (582)
T PRK09231          3 FQADLAIIGAGGAGLRAAIAAAEANP-NLKIALISKVYP   40 (582)
T ss_pred             eeeeEEEECccHHHHHHHHHHHHhCC-CCcEEEEEccCC
Confidence            34799999999999999999998763 448999999753

>KOG2820 consensus FAD-dependent oxidoreductase [General function prediction only]

Probab=97.78  E-value=4.2e-05  Score=71.60  Aligned_cols=48  Identities=17%  Similarity=0.225  Sum_probs=38.4

Q ss_pred             hHHHHCCcEEEeCCcEEEEeCC-----CcEEEeCCCeEEEeccEEeccCCCCC
Q 012165          128 EWYKEKGIEMIYQDPVTSIDIE-----KQTLITNSGKLLKYGSLIVATGCTAS  175 (469)
Q Consensus       128 ~~~~~~~i~~~~~~~v~~id~~-----~~~v~~~~g~~~~yd~lVlAtG~~~~  175 (469)
                      +.+++.|+.++.+..|..+...     ...|.+.+|..+.++++|+++|+.-.
T Consensus       161 ~~~~~~G~i~~dg~~v~~~~~~~e~~~~v~V~Tt~gs~Y~akkiI~t~GaWi~  213 (399)
T KOG2820|consen  161 DKARELGVIFRDGEKVKFIKFVDEEGNHVSVQTTDGSIYHAKKIIFTVGAWIN  213 (399)
T ss_pred             HHHHHcCeEEecCcceeeEeeccCCCceeEEEeccCCeeecceEEEEecHHHH
Confidence            4467789999999888887632     23678889999999999999998743

>COG2907 Predicted NAD/FAD-binding protein [General function prediction only]

Probab=97.77  E-value=0.00018  Score=67.68  Aligned_cols=39  Identities=13%  Similarity=0.166  Sum_probs=33.8

Q ss_pred             CCCcEEEEcCcHHHHHHHHHHHHcCCCCCcEEEEcCCCCCCCC
Q 012165           50 ENREFVIVGGGNAAGYAARTFVEHGMADGRLCIVSKEAYAPYE   92 (469)
Q Consensus        50 ~~~~vvIIGgG~AGl~aA~~L~~~g~~~~~V~vie~~~~~~~~   92 (469)
                      .+.+|.|||+|.+||+||..|.++-    +||++|.+...+.+
T Consensus         7 ~r~~IAVIGsGisGLSAA~~Ls~rh----dVTLfEA~~rlGGh   45 (447)
T COG2907           7 PRRKIAVIGSGISGLSAAWLLSRRH----DVTLFEADRRLGGH   45 (447)
T ss_pred             CCcceEEEcccchhhhhHHhhhccc----ceEEEeccccccCc
Confidence            4568999999999999999998863    79999999887654

>TIGR01176 fum_red_Fp fumarate reductase, flavoprotein subunit

Probab=97.76  E-value=9e-05  Score=77.75  Aligned_cols=37  Identities=22%  Similarity=0.234  Sum_probs=31.9

Q ss_pred             CCcEEEEcCcHHHHHHHHHHHHcCCCCCcEEEEcCCCC
Q 012165           51 NREFVIVGGGNAAGYAARTFVEHGMADGRLCIVSKEAY   88 (469)
Q Consensus        51 ~~~vvIIGgG~AGl~aA~~L~~~g~~~~~V~vie~~~~   88 (469)
                      .+||+|||+|.||++||.++++.+. ..+|+|+|+...
T Consensus         3 ~~DVlVIG~G~AGl~AAl~aa~~g~-g~~V~lveK~~~   39 (580)
T TIGR01176         3 QHDIAVIGAGGAGLRAAIAAAEANP-HLDVALISKVYP   39 (580)
T ss_pred             ceeEEEECccHHHHHHHHHHHHhCC-CCcEEEEEccCC
Confidence            4799999999999999999998753 458999999754

The terms succinate dehydrogenase and fumarate reductase may be used interchangeably in certain systems. However, a number of species have distinct complexes, with the fumarate reductase active under anaerobic conditions. This model represents the fumarate reductase flavoprotein subunit from several such species in which a distinct succinate dehydrogenase is also found. Not all bona fide fumarate reductases will be found by this model.

>KOG0029 consensus Amine oxidase [Secondary metabolites biosynthesis, transport and catabolism]

Probab=97.72  E-value=4.2e-05  Score=78.08  Aligned_cols=43  Identities=19%  Similarity=0.313  Sum_probs=38.0

Q ss_pred             cCCCCCCcEEEEcCcHHHHHHHHHHHHcCCCCCcEEEEcCCCCCCC
Q 012165           46 SFANENREFVIVGGGNAAGYAARTFVEHGMADGRLCIVSKEAYAPY   91 (469)
Q Consensus        46 ~~~~~~~~vvIIGgG~AGl~aA~~L~~~g~~~~~V~vie~~~~~~~   91 (469)
                      +..+++++|+|||||+|||+||++|.+.|+   +|+|+|..+..+.
T Consensus        10 ~~~~~~~~VIVIGAGiaGLsAArqL~~~G~---~V~VLEARdRvGG   52 (501)
T KOG0029|consen   10 PEAGKKKKVIVIGAGLAGLSAARQLQDFGF---DVLVLEARDRVGG   52 (501)
T ss_pred             ccccCCCcEEEECCcHHHHHHHHHHHHcCC---ceEEEeccCCcCc
Confidence            345677899999999999999999999998   7999999987653

>PRK11749 dihydropyrimidine dehydrogenase subunit A; Provisional

Probab=97.63  E-value=0.00026  Score=72.41  Aligned_cols=95  Identities=26%  Similarity=0.277  Sum_probs=68.2

Q ss_pred             CCCcEEEEcCcHHHHHHHHHHHHcCCCCCcEEEEcCCCCCCCCCCCCcccccCCCCCCCCCCCCCccccCCCCCCCCHhH
Q 012165           50 ENREFVIVGGGNAAGYAARTFVEHGMADGRLCIVSKEAYAPYERPALTKGYLFPLDKKPARLPGFHTCVGSGGERQTPEW  129 (469)
Q Consensus        50 ~~~~vvIIGgG~AGl~aA~~L~~~g~~~~~V~vie~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  129 (469)
                      ..++|+|||||..|+.+|..|.+.|.+  +|++++......     ++.      .                  ....+.
T Consensus       272 ~g~~VvViGgG~~g~e~A~~l~~~G~~--~Vtlv~~~~~~~-----~~~------~------------------~~~~~~  320 (457)
T PRK11749        272 VGKRVVVIGGGNTAMDAARTAKRLGAE--SVTIVYRRGREE-----MPA------S------------------EEEVEH  320 (457)
T ss_pred             CCCeEEEECCCHHHHHHHHHHHHcCCC--eEEEeeecCccc-----CCC------C------------------HHHHHH
Confidence            457999999999999999999998753  799998654210     000      0                  012355


Q ss_pred             HHHCCcEEEeCCcEEEEeCCCc---EEEeC-------------------CCeEEEeccEEeccCCCCC
Q 012165          130 YKEKGIEMIYQDPVTSIDIEKQ---TLITN-------------------SGKLLKYGSLIVATGCTAS  175 (469)
Q Consensus       130 ~~~~~i~~~~~~~v~~id~~~~---~v~~~-------------------~g~~~~yd~lVlAtG~~~~  175 (469)
                      +++.||+++.++.+..+..++.   .|++.                   ++.++++|.||+|+|..|.
T Consensus       321 ~~~~GV~i~~~~~v~~i~~~~~~~~~v~~~~~~~~~~~~~g~~~~~~~g~~~~i~~D~vi~a~G~~p~  388 (457)
T PRK11749        321 AKEEGVEFEWLAAPVEILGDEGRVTGVEFVRMELGEPDASGRRRVPIEGSEFTLPADLVIKAIGQTPN  388 (457)
T ss_pred             HHHCCCEEEecCCcEEEEecCCceEEEEEEEEEecCcCCCCCcccCCCCceEEEECCEEEECccCCCC
Confidence            6788999999988888865542   13321                   2347999999999998875

>PRK07395 L-aspartate oxidase; Provisional

Probab=97.61  E-value=0.00013  Score=76.23  Aligned_cols=54  Identities=24%  Similarity=0.350  Sum_probs=37.1

Q ss_pred             CCCEEeCCCCCCCCCceEEeccccccCCccCCcccccchHHHHHHHHHHHHHHHh
Q 012165          302 VGGIQVDGQFRTRMPGIFAIGDVAAFPLKMYDRTARVEHVDHARQSAQHCIKALL  356 (469)
Q Consensus       302 ~g~i~Vd~~~~t~~~~Vfa~GD~a~~~~~~~~~~~~~~~~~~A~~~a~~~a~~i~  356 (469)
                      -|||.||.+.||++|++||+|+|+.......++.. -.+...+...|+.+++.+.
T Consensus       347 ~GGi~vd~~~~t~I~GLyAaGE~a~~G~hGanRL~-gnsl~e~lvfG~~a~~~~~  400 (553)
T PRK07395        347 MGGVVTDLNNQTSIPGLYAVGETASTGVHGANRLA-SNSLLECLVFAAQLAQLEL  400 (553)
T ss_pred             CCCeeECCCCcccCCCEEECccccccCCCcccchH-HHHHHHHHHHHHHHHHHHH
Confidence            48999999999999999999999753221112221 2244556666777777764

>PRK07208 hypothetical protein; Provisional

Probab=97.60  E-value=7.8e-05  Score=76.84  Aligned_cols=40  Identities=20%  Similarity=0.347  Sum_probs=35.8

Q ss_pred             CCCCcEEEEcCcHHHHHHHHHHHHcCCCCCcEEEEcCCCCCCC
Q 012165           49 NENREFVIVGGGNAAGYAARTFVEHGMADGRLCIVSKEAYAPY   91 (469)
Q Consensus        49 ~~~~~vvIIGgG~AGl~aA~~L~~~g~~~~~V~vie~~~~~~~   91 (469)
                      +++++|+|||||++||+||..|.++|+   +|+|+|+.+..+.
T Consensus         2 ~~~~~vvIiGaGisGL~aA~~L~~~g~---~v~v~E~~~~~GG   41 (479)
T PRK07208          2 TNKKSVVIIGAGPAGLTAAYELLKRGY---PVTVLEADPVVGG   41 (479)
T ss_pred             CCCCcEEEECcCHHHHHHHHHHHHCCC---cEEEEecCCCCCc
Confidence            566899999999999999999999987   7999999987653

>PRK06834 hypothetical protein; Provisional

Probab=97.59  E-value=0.00038  Score=71.65  Aligned_cols=81  Identities=27%  Similarity=0.408  Sum_probs=66.8

Q ss_pred             CeEEEEcCChHHHHHHHHHHhCCCeEe-----------------------------------------------------
Q 012165          208 KKVVVVGGGYIGMEVAAAAVGWKLDTT-----------------------------------------------------  234 (469)
Q Consensus       208 ~~vvVvG~G~~g~e~A~~l~~~g~~v~-----------------------------------------------------  234 (469)
                      ..|+|||+|+.|+-+|..|++.|.++.                                                     
T Consensus         4 ~dVlIVGaGp~Gl~lA~~La~~G~~v~vlEr~~~~~~~~~Ra~~l~~~s~~~L~~lGl~~~l~~~~~~~~~~~~~~~~~~   83 (488)
T PRK06834          4 HAVVIAGGGPTGLMLAGELALAGVDVAIVERRPNQELVGSRAGGLHARTLEVLDQRGIADRFLAQGQVAQVTGFAATRLD   83 (488)
T ss_pred             ceEEEECCCHHHHHHHHHHHHCCCcEEEEecCCCCCCCCcceeeECHHHHHHHHHcCcHHHHHhcCCccccceeeeEecc
Confidence            479999999999999999999998876                                                     


Q ss_pred             ---------------------eeHHHHHHcCcEEEcCCeEEEEEeCCCCcEEEEEcCCCCEEeCCEEEEccCCccCC
Q 012165          235 ---------------------RYEQLYQQNGVKFVKGASIKNLEAGSDGRVAAVKLEDGSTIDADTIVIGIGAKPTV  290 (469)
Q Consensus       235 ---------------------~~~~~l~~~gV~~~~~~~v~~i~~~~~~~v~~v~~~~g~~i~~D~vi~a~G~~p~~  290 (469)
                                           .+.+.+++.|++++.+++++.++.++++ + .+++.+|+++.+|+||.|.|..+..
T Consensus        84 ~~~~~~~~~~~~~i~q~~le~~L~~~l~~~gv~i~~~~~v~~v~~~~~~-v-~v~~~~g~~i~a~~vVgADG~~S~v  158 (488)
T PRK06834         84 ISDFPTRHNYGLALWQNHIERILAEWVGELGVPIYRGREVTGFAQDDTG-V-DVELSDGRTLRAQYLVGCDGGRSLV  158 (488)
T ss_pred             cccCCCCCCccccccHHHHHHHHHHHHHhCCCEEEcCCEEEEEEEcCCe-E-EEEECCCCEEEeCEEEEecCCCCCc
Confidence                                 2334556779999999999999865443 3 4667788899999999999998753

>PRK12770 putative glutamate synthase subunit beta; Provisional

Probab=97.57  E-value=0.00042  Score=68.36  Aligned_cols=94  Identities=21%  Similarity=0.240  Sum_probs=66.6

Q ss_pred             CCcEEEEcCcHHHHHHHHHHHHcCCCCCcEEEEcCCCCCCCCCCCCcccccCCCCCCCCCCCCCccccCCCCCCCCHhHH
Q 012165           51 NREFVIVGGGNAAGYAARTFVEHGMADGRLCIVSKEAYAPYERPALTKGYLFPLDKKPARLPGFHTCVGSGGERQTPEWY  130 (469)
Q Consensus        51 ~~~vvIIGgG~AGl~aA~~L~~~g~~~~~V~vie~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  130 (469)
                      .++++|||+|+.|+.+|..|.+.|..  +|+|++..+..  . .        +   .               .....+.+
T Consensus       172 g~~vvViG~G~~g~e~A~~l~~~g~~--~Vtvi~~~~~~--~-~--------~---~---------------~~~~~~~l  220 (352)
T PRK12770        172 GKKVVVVGAGLTAVDAALEAVLLGAE--KVYLAYRRTIN--E-A--------P---A---------------GKYEIERL  220 (352)
T ss_pred             CCEEEEECCCHHHHHHHHHHHHcCCC--eEEEEeecchh--h-C--------C---C---------------CHHHHHHH
Confidence            46899999999999999999988752  49999764321  0 0        0   0               01123457


Q ss_pred             HHCCcEEEeCCcEEEEeCCCc--EEEe--------------------CCCeEEEeccEEeccCCCCC
Q 012165          131 KEKGIEMIYQDPVTSIDIEKQ--TLIT--------------------NSGKLLKYGSLIVATGCTAS  175 (469)
Q Consensus       131 ~~~~i~~~~~~~v~~id~~~~--~v~~--------------------~~g~~~~yd~lVlAtG~~~~  175 (469)
                      ++++++++.+..+.+++.+++  .|.+                    .++..+++|.||+|+|.+|.
T Consensus       221 ~~~gi~i~~~~~v~~i~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~D~vi~a~G~~p~  287 (352)
T PRK12770        221 IARGVEFLELVTPVRIIGEGRVEGVELAKMRLGEPDESGRPRPVPIPGSEFVLEADTVVFAIGEIPT  287 (352)
T ss_pred             HHcCCEEeeccCceeeecCCcEeEEEEEEEEecCcCcccCcCceecCCCeEEEECCEEEECcccCCC
Confidence            889999999888888875543  2221                    12357999999999999875

>PRK08773 2-octaprenyl-3-methyl-6-methoxy-1,4-benzoquinol hydroxylase; Validated

Probab=97.56  E-value=0.00042  Score=69.46  Aligned_cols=50  Identities=30%  Similarity=0.458  Sum_probs=40.1

Q ss_pred             HHHHHcCcEEEcCCeEEEEEeCCCCcEEEEEcCCCCEEeCCEEEEccCCccC
Q 012165          238 QLYQQNGVKFVKGASIKNLEAGSDGRVAAVKLEDGSTIDADTIVIGIGAKPT  289 (469)
Q Consensus       238 ~~l~~~gV~~~~~~~v~~i~~~~~~~v~~v~~~~g~~i~~D~vi~a~G~~p~  289 (469)
                      +.+++.|++++.++++++++.+++ .+ .+++++|+++.+|+||.|.|..+.
T Consensus       121 ~~~~~~gv~i~~~~~v~~i~~~~~-~v-~v~~~~g~~~~a~~vV~AdG~~S~  170 (392)
T PRK08773        121 AALHAAGVQLHCPARVVALEQDAD-RV-RLRLDDGRRLEAALAIAADGAAST  170 (392)
T ss_pred             HHHHhCCCEEEcCCeEEEEEecCC-eE-EEEECCCCEEEeCEEEEecCCCch
Confidence            345567999999999999986433 33 477888889999999999999874

>PRK12810 gltD glutamate synthase subunit beta; Reviewed

Probab=97.56  E-value=0.00069  Score=69.57  Aligned_cols=105  Identities=17%  Similarity=0.249  Sum_probs=66.9

Q ss_pred             CCCcEEEEcCcHHHHHHHHHHHHcCCCCCcEEEEcCCCCCCCCCCCCcccccCCCCCCCCCCCCCccccCCCCCCCCHhH
Q 012165           50 ENREFVIVGGGNAAGYAARTFVEHGMADGRLCIVSKEAYAPYERPALTKGYLFPLDKKPARLPGFHTCVGSGGERQTPEW  129 (469)
Q Consensus        50 ~~~~vvIIGgG~AGl~aA~~L~~~g~~~~~V~vie~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  129 (469)
                      ..++|+|||||..|+-+|..+.+.|..  +|++++..+......       . .    ...++.+.       .....+.
T Consensus       280 ~gk~VvVIGgG~~g~e~A~~~~~~ga~--~Vt~~~~~~~~~~~~-------~-~----~~~~~~~~-------~~~~~~~  338 (471)
T PRK12810        280 KGKHVVVIGGGDTGMDCVGTAIRQGAK--SVTQRDIMPMPPSRR-------N-K----NNPWPYWP-------MKLEVSN  338 (471)
T ss_pred             CCCEEEEECCcHHHHHHHHHHHHcCCC--eEEEccccCCCcccc-------c-c----ccCCcccc-------hHHHHHH
Confidence            457999999999999999999888742  688776554321110       0 0    00010000       0002345


Q ss_pred             HHHCCcEEEeCCcEEEEeCCCcEE---E-----eCCC---------eEEEeccEEeccCCCCC
Q 012165          130 YKEKGIEMIYQDPVTSIDIEKQTL---I-----TNSG---------KLLKYGSLIVATGCTAS  175 (469)
Q Consensus       130 ~~~~~i~~~~~~~v~~id~~~~~v---~-----~~~g---------~~~~yd~lVlAtG~~~~  175 (469)
                      +.+.|++++++..+.++..++..|   .     ..+|         .++++|.||+|+|..|.
T Consensus       339 ~~~~GV~i~~~~~~~~i~~~~g~v~~V~~~~~~~~~g~~~~~~g~~~~i~~D~VI~A~G~~p~  401 (471)
T PRK12810        339 AHEEGVEREFNVQTKEFEGENGKVTGVKVVRTELGEGDFEPVEGSEFVLPADLVLLAMGFTGP  401 (471)
T ss_pred             HHHcCCeEEeccCceEEEccCCEEEEEEEEEEEecCCCccccCCceEEEECCEEEECcCcCCC
Confidence            677899999998888887533322   1     2122         46999999999998765

>PF06039 Mqo: Malate:quinone oxidoreductase (Mqo); InterPro: IPR006231 The membrane-associated enzyme, malate:quinone-oxidoreductase, is an alternative to the better-known NAD-dependent malate dehydrogenase as part of the TCA cycle

Probab=97.52  E-value=5.7e-05  Score=74.28  Aligned_cols=90  Identities=21%  Similarity=0.407  Sum_probs=60.1

Q ss_pred             HHhCCCeEe------eeHHHHHHc-CcEEEcCCeEEEEEeCCCCc-EEEEE-cC--CCCEEeCCEEEEccCCccCCchhh
Q 012165          226 AVGWKLDTT------RYEQLYQQN-GVKFVKGASIKNLEAGSDGR-VAAVK-LE--DGSTIDADTIVIGIGAKPTVSPFE  294 (469)
Q Consensus       226 l~~~g~~v~------~~~~~l~~~-gV~~~~~~~v~~i~~~~~~~-v~~v~-~~--~g~~i~~D~vi~a~G~~p~~~~~~  294 (469)
                      -...|.+|.      .+.+.+++. |++++++++|++|++.+++. ...+. +.  +..++.++.|+++.|-..- .+++
T Consensus       171 ~~~~GTDVnFG~LTr~l~~~l~~~~~~~~~~~~eV~~i~r~~dg~W~v~~~~~~~~~~~~v~a~FVfvGAGG~aL-~LLq  249 (488)
T PF06039_consen  171 RVEEGTDVNFGALTRQLVEYLQKQKGFELHLNHEVTDIKRNGDGRWEVKVKDLKTGEKREVRAKFVFVGAGGGAL-PLLQ  249 (488)
T ss_pred             ecCCCccccHHHHHHHHHHHHHhCCCcEEEecCEeCeeEECCCCCEEEEEEecCCCCeEEEECCEEEECCchHhH-HHHH
Confidence            345566665      344445555 99999999999999887773 22221 22  3357999999999987753 6788


Q ss_pred             hcCCcc--cCCCEEeC-CCCCCCCC
Q 012165          295 RVGLNS--SVGGIQVD-GQFRTRMP  316 (469)
Q Consensus       295 ~~gl~~--~~g~i~Vd-~~~~t~~~  316 (469)
                      .+|++.  .-|+.+|. ..+++..|
T Consensus       250 ksgi~e~~gyggfPVsG~fl~~~n~  274 (488)
T PF06039_consen  250 KSGIPEGKGYGGFPVSGQFLRCKNP  274 (488)
T ss_pred             HcCChhhcccCCCcccceEEecCCH
Confidence            888853  34556665 35555433

The reduction of a quinone rather than NAD+ makes the reaction essentially irreversible in the direction of malate oxidation to oxaloacetate. Both forms of malate dehydrogenase are active in Escherichia coli; disruption of this form causes less phenotypic change. In some bacteria, this form is the only or the more important malate dehydrogenase []. ; GO: 0008924 malate dehydrogenase (quinone) activity, 0006099 tricarboxylic acid cycle, 0055114 oxidation-reduction process

>PRK08244 hypothetical protein; Provisional

Probab=97.52  E-value=0.0005  Score=71.13  Aligned_cols=82  Identities=26%  Similarity=0.387  Sum_probs=63.7

Q ss_pred             CeEEEEcCChHHHHHHHHHHhCCCeEe-----------------------------------------------------
Q 012165          208 KKVVVVGGGYIGMEVAAAAVGWKLDTT-----------------------------------------------------  234 (469)
Q Consensus       208 ~~vvVvG~G~~g~e~A~~l~~~g~~v~-----------------------------------------------------  234 (469)
                      ..|+|||+|+.|+-+|..|++.|.++.                                                     
T Consensus         3 ~dVlIVGaGpaGl~lA~~L~~~G~~v~viEr~~~~~~~~ra~~l~~~~~e~l~~lGl~~~l~~~~~~~~~~~~~~~~~~~   82 (493)
T PRK08244          3 YEVIIIGGGPVGLMLASELALAGVKTCVIERLKETVPYSKALTLHPRTLEILDMRGLLERFLEKGRKLPSGHFAGLDTRL   82 (493)
T ss_pred             CCEEEECCCHHHHHHHHHHHHCCCcEEEEecCCCCCCCcceeEecHHHHHHHHhcCcHHHHHhhcccccceEEecccccC
Confidence            369999999999999999999998886                                                     


Q ss_pred             ----------------------eeHHHHHHcCcEEEcCCeEEEEEeCCCCcEEEEEcCCC-CEEeCCEEEEccCCccC
Q 012165          235 ----------------------RYEQLYQQNGVKFVKGASIKNLEAGSDGRVAAVKLEDG-STIDADTIVIGIGAKPT  289 (469)
Q Consensus       235 ----------------------~~~~~l~~~gV~~~~~~~v~~i~~~~~~~v~~v~~~~g-~~i~~D~vi~a~G~~p~  289 (469)
                                            .+.+.+++.|++++.++++++++.++++....+...+| +++.+|+||.|.|.+..
T Consensus        83 ~~~~~~~~~~~~~~i~q~~le~~L~~~~~~~gv~v~~~~~v~~i~~~~~~v~v~~~~~~g~~~i~a~~vVgADG~~S~  160 (493)
T PRK08244         83 DFSALDTSSNYTLFLPQAETEKVLEEHARSLGVEIFRGAEVLAVRQDGDGVEVVVRGPDGLRTLTSSYVVGADGAGSI  160 (493)
T ss_pred             CcccCCCCCCcEEEecHHHHHHHHHHHHHHcCCeEEeCCEEEEEEEcCCeEEEEEEeCCccEEEEeCEEEECCCCChH
Confidence                                  23344566799999999999998654443222333356 47999999999999764

>COG0445 GidA Flavin-dependent tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA [Cell cycle control, cell division, chromosome partitioning]

Probab=97.52  E-value=7.9e-05  Score=74.28  Aligned_cols=35  Identities=20%  Similarity=0.381  Sum_probs=29.1

Q ss_pred             CCCcEEEEcCcHHHHHHHHHHHHcCCCCCcEEEEcCCC
Q 012165           50 ENREFVIVGGGNAAGYAARTFVEHGMADGRLCIVSKEA   87 (469)
Q Consensus        50 ~~~~vvIIGgG~AGl~aA~~L~~~g~~~~~V~vie~~~   87 (469)
                      ..+||+|||||.||..||...+|.|.   +..|+.-+.
T Consensus         3 ~~~DVIVIGgGHAG~EAA~AaARmG~---ktlLlT~~~   37 (621)
T COG0445           3 KEYDVIVIGGGHAGVEAALAAARMGA---KTLLLTLNL   37 (621)
T ss_pred             CCCceEEECCCccchHHHHhhhccCC---eEEEEEcCC
Confidence            34899999999999999999999987   566665443

>COG0578 GlpA Glycerol-3-phosphate dehydrogenase [Energy production and conversion]

Probab=97.51  E-value=0.00025  Score=71.89  Aligned_cols=40  Identities=25%  Similarity=0.429  Sum_probs=36.1

Q ss_pred             CCCCcEEEEcCcHHHHHHHHHHHHcCCCCCcEEEEcCCCCCCC
Q 012165           49 NENREFVIVGGGNAAGYAARTFVEHGMADGRLCIVSKEAYAPY   91 (469)
Q Consensus        49 ~~~~~vvIIGgG~AGl~aA~~L~~~g~~~~~V~vie~~~~~~~   91 (469)
                      +..+||+|||||+.|+.+|..++.+|+   +|+|+|+.+....
T Consensus        10 ~~~~DviVIGGGitG~GiArDaA~RGl---~v~LvE~~D~AsG   49 (532)
T COG0578          10 MEEFDVIVIGGGITGAGIARDAAGRGL---KVALVEKGDLASG   49 (532)
T ss_pred             ccCCCEEEECCchhhHHHHHHHHhCCC---eEEEEecCcccCc
Confidence            477999999999999999999999999   7999999987543

>PLN02172 flavin-containing monooxygenase FMO GS-OX

Probab=97.51  E-value=0.0029  Score=64.54  Aligned_cols=114  Identities=17%  Similarity=0.231  Sum_probs=72.2

Q ss_pred             cCCeEEEEcCChHHHHHHHHHHhCCCeEe---------------------------------------------------
Q 012165          206 KAKKVVVVGGGYIGMEVAAAAVGWKLDTT---------------------------------------------------  234 (469)
Q Consensus       206 ~~~~vvVvG~G~~g~e~A~~l~~~g~~v~---------------------------------------------------  234 (469)
                      ..++|+|||+|++|+-+|..|.+.|.+++                                                   
T Consensus         9 ~~~~VaIIGAG~aGL~aA~~l~~~G~~v~vfE~~~~vGG~W~~~~~~~~d~~~~~~~~~~~~s~~Y~~L~tn~p~~~m~f   88 (461)
T PLN02172          9 NSQHVAVIGAGAAGLVAARELRREGHTVVVFEREKQVGGLWVYTPKSESDPLSLDPTRSIVHSSVYESLRTNLPRECMGY   88 (461)
T ss_pred             CCCCEEEECCcHHHHHHHHHHHhcCCeEEEEecCCCCcceeecCCCcCCCccccCCCCcccchhhhhhhhccCCHhhccC
Confidence            35889999999999999999998887765                                                   


Q ss_pred             ---------------------------eeHHHHHHcCcE--EEcCCeEEEEEeCCCCcEEEEEcCCC--C--EEeCCEEE
Q 012165          235 ---------------------------RYEQLYQQNGVK--FVKGASIKNLEAGSDGRVAAVKLEDG--S--TIDADTIV  281 (469)
Q Consensus       235 ---------------------------~~~~~l~~~gV~--~~~~~~v~~i~~~~~~~v~~v~~~~g--~--~i~~D~vi  281 (469)
                                                 .+++..+..|+.  ++++++|++++..+ +. ..|.+.++  .  +..+|.||
T Consensus        89 ~dfp~~~~~~~~~~~~~~fp~~~ev~~YL~~~a~~fgl~~~I~~~t~V~~V~~~~-~~-w~V~~~~~~~~~~~~~~d~VI  166 (461)
T PLN02172         89 RDFPFVPRFDDESRDSRRYPSHREVLAYLQDFAREFKIEEMVRFETEVVRVEPVD-GK-WRVQSKNSGGFSKDEIFDAVV  166 (461)
T ss_pred             CCCCCCcccccccCcCCCCCCHHHHHHHHHHHHHHcCCcceEEecCEEEEEeecC-Ce-EEEEEEcCCCceEEEEcCEEE
Confidence                                       112222345777  78899999998643 32 23544432  2  46799999


Q ss_pred             EccC--CccCCchhhhcCCcccCCCEEeCCCCCC----CCCceEEecc
Q 012165          282 IGIG--AKPTVSPFERVGLNSSVGGIQVDGQFRT----RMPGIFAIGD  323 (469)
Q Consensus       282 ~a~G--~~p~~~~~~~~gl~~~~g~i~Vd~~~~t----~~~~Vfa~GD  323 (469)
                      +|+|  ..|+.+-+.+  ++.-.|.+.--..+++    ...+|.++|-
T Consensus       167 vAtG~~~~P~~P~ipG--~~~f~G~~iHs~~yr~~~~~~gk~VvVVG~  212 (461)
T PLN02172        167 VCNGHYTEPNVAHIPG--IKSWPGKQIHSHNYRVPDPFKNEVVVVIGN  212 (461)
T ss_pred             EeccCCCCCcCCCCCC--cccCCceEEEecccCCccccCCCEEEEECC
Confidence            9999  4666443332  2211232222222333    3467888883

>PRK07236 hypothetical protein; Provisional

Probab=97.50  E-value=0.00067  Score=67.83  Aligned_cols=81  Identities=23%  Similarity=0.341  Sum_probs=62.7

Q ss_pred             CCeEEEEcCChHHHHHHHHHHhCCCeEe--------------------eeHHHHHHc-----------------------
Q 012165          207 AKKVVVVGGGYIGMEVAAAAVGWKLDTT--------------------RYEQLYQQN-----------------------  243 (469)
Q Consensus       207 ~~~vvVvG~G~~g~e~A~~l~~~g~~v~--------------------~~~~~l~~~-----------------------  243 (469)
                      ..+|+|||||+.|+.+|..|++.|.+++                    ...+.|++.                       
T Consensus         6 ~~~ViIVGaG~aGl~~A~~L~~~G~~v~v~E~~~~~~~~~g~gi~l~~~~~~~l~~lg~~~~~~~~~~~~~~~~~~~~g~   85 (386)
T PRK07236          6 GPRAVVIGGSLGGLFAALLLRRAGWDVDVFERSPTELDGRGAGIVLQPELLRALAEAGVALPADIGVPSRERIYLDRDGR   85 (386)
T ss_pred             CCeEEEECCCHHHHHHHHHHHhCCCCEEEEecCCCCcCCCCceeEeCHHHHHHHHHcCCCcccccccCccceEEEeCCCC
Confidence            4789999999999999999999998887                    011222222                       


Q ss_pred             --------------------------CcEEEcCCeEEEEEeCCCCcEEEEEcCCCCEEeCCEEEEccCCccC
Q 012165          244 --------------------------GVKFVKGASIKNLEAGSDGRVAAVKLEDGSTIDADTIVIGIGAKPT  289 (469)
Q Consensus       244 --------------------------gV~~~~~~~v~~i~~~~~~~v~~v~~~~g~~i~~D~vi~a~G~~p~  289 (469)
                                                +++++.++++++++.+++ .+ .+.+++|+++.+|+||.|-|....
T Consensus        86 ~~~~~~~~~~~~~~~~l~~~L~~~~~~~~i~~~~~v~~i~~~~~-~v-~v~~~~g~~~~ad~vIgADG~~S~  155 (386)
T PRK07236         86 VVQRRPMPQTQTSWNVLYRALRAAFPAERYHLGETLVGFEQDGD-RV-TARFADGRRETADLLVGADGGRST  155 (386)
T ss_pred             EeeccCCCccccCHHHHHHHHHHhCCCcEEEcCCEEEEEEecCC-eE-EEEECCCCEEEeCEEEECCCCCch
Confidence                                      245888999999986533 34 578899999999999999998654

>PLN02463 lycopene beta cyclase

Probab=97.49  E-value=0.00064  Score=68.88  Aligned_cols=79  Identities=28%  Similarity=0.381  Sum_probs=62.0

Q ss_pred             CeEEEEcCChHHHHHHHHHHhCCCeEe-----------------------------------------------------
Q 012165          208 KKVVVVGGGYIGMEVAAAAVGWKLDTT-----------------------------------------------------  234 (469)
Q Consensus       208 ~~vvVvG~G~~g~e~A~~l~~~g~~v~-----------------------------------------------------  234 (469)
                      -+|+|||+|+.|+.+|..|++.|.+|.                                                     
T Consensus        29 ~DVvIVGaGpAGLalA~~La~~Gl~V~liE~~~~~~~p~~~g~w~~~l~~lgl~~~l~~~w~~~~v~~~~~~~~~~~~~y  108 (447)
T PLN02463         29 VDLVVVGGGPAGLAVAQQVSEAGLSVCCIDPSPLSIWPNNYGVWVDEFEALGLLDCLDTTWPGAVVYIDDGKKKDLDRPY  108 (447)
T ss_pred             ceEEEECCCHHHHHHHHHHHHCCCeEEEeccCccchhccccchHHHHHHHCCcHHHHHhhCCCcEEEEeCCCCccccCcc
Confidence            479999999999999999999888775                                                     


Q ss_pred             ----------eeHHHHHHcCcEEEcCCeEEEEEeCCCCcEEEEEcCCCCEEeCCEEEEccCCccC
Q 012165          235 ----------RYEQLYQQNGVKFVKGASIKNLEAGSDGRVAAVKLEDGSTIDADTIVIGIGAKPT  289 (469)
Q Consensus       235 ----------~~~~~l~~~gV~~~~~~~v~~i~~~~~~~v~~v~~~~g~~i~~D~vi~a~G~~p~  289 (469)
                                .+.+.+.+.|++++ ..+|++++..+ +. ..|.+++|+++.+|+||.|+|..+.
T Consensus       109 ~~V~R~~L~~~Ll~~~~~~GV~~~-~~~V~~I~~~~-~~-~~V~~~dG~~i~A~lVI~AdG~~s~  170 (447)
T PLN02463        109 GRVNRKKLKSKMLERCIANGVQFH-QAKVKKVVHEE-SK-SLVVCDDGVKIQASLVLDATGFSRC  170 (447)
T ss_pred             eeEEHHHHHHHHHHHHhhcCCEEE-eeEEEEEEEcC-Ce-EEEEECCCCEEEcCEEEECcCCCcC
Confidence                      12233355789987 45888888643 33 3578889989999999999998764

>PRK08255 salicylyl-CoA 5-hydroxylase; Reviewed

Probab=97.49  E-value=6.8e-05  Score=81.41  Aligned_cols=35  Identities=23%  Similarity=0.269  Sum_probs=30.3

Q ss_pred             cEEEEcCcHHHHHHHHHHHHcCCCCCcEEEEcCCCC
Q 012165           53 EFVIVGGGNAAGYAARTFVEHGMADGRLCIVSKEAY   88 (469)
Q Consensus        53 ~vvIIGgG~AGl~aA~~L~~~g~~~~~V~vie~~~~   88 (469)
                      +|+|||||+||+++|..|++.+. ..+|+|+|+.+.
T Consensus         2 ~V~IIGaGpAGLaaAi~L~~~~~-G~~V~vlEr~~~   36 (765)
T PRK08255          2 RIVCIGGGPAGLYFALLMKLLDP-AHEVTVVERNRP   36 (765)
T ss_pred             eEEEECCCHHHHHHHHHHHHhCC-CCeEEEEecCCC
Confidence            79999999999999999999831 238999999875

>KOG2665 consensus Predicted FAD-dependent oxidoreductase [Function unknown]

Probab=97.49  E-value=0.00037  Score=64.70  Aligned_cols=43  Identities=23%  Similarity=0.343  Sum_probs=36.3

Q ss_pred             CCCCCcEEEEcCcHHHHHHHHHHHHcCCCCCcEEEEcCCCCCCC
Q 012165           48 ANENREFVIVGGGNAAGYAARTFVEHGMADGRLCIVSKEAYAPY   91 (469)
Q Consensus        48 ~~~~~~vvIIGgG~AGl~aA~~L~~~g~~~~~V~vie~~~~~~~   91 (469)
                      ....+|+||||||+.|++.|++|.-+- |..+|.|+|++..+.-
T Consensus        45 s~~~~D~VvvGgGiVGlAsARel~lrh-p~l~V~vleke~~la~   87 (453)
T KOG2665|consen   45 SKERYDLVVVGGGIVGLASARELSLRH-PSLKVAVLEKEKSLAV   87 (453)
T ss_pred             ccccccEEEECCceeehhhhHHHhhcC-CCceEEeeehhhhhce
Confidence            456799999999999999999998764 4679999999987643

>PRK09126 hypothetical protein; Provisional

Probab=97.48  E-value=0.00053  Score=68.68  Aligned_cols=47  Identities=17%  Similarity=0.364  Sum_probs=38.2

Q ss_pred             HcCcEEEcCCeEEEEEeCCCCcEEEEEcCCCCEEeCCEEEEccCCccCC
Q 012165          242 QNGVKFVKGASIKNLEAGSDGRVAAVKLEDGSTIDADTIVIGIGAKPTV  290 (469)
Q Consensus       242 ~~gV~~~~~~~v~~i~~~~~~~v~~v~~~~g~~i~~D~vi~a~G~~p~~  290 (469)
                      ..|++++.++++++++..+ +.+ .|.+++|+++.+|+||.|.|..+..
T Consensus       123 ~~g~~i~~~~~v~~~~~~~-~~~-~v~~~~g~~~~a~~vI~AdG~~S~v  169 (392)
T PRK09126        123 QDGIELLTGTRVTAVRTDD-DGA-QVTLANGRRLTARLLVAADSRFSAT  169 (392)
T ss_pred             CCCcEEEcCCeEEEEEEcC-CeE-EEEEcCCCEEEeCEEEEeCCCCchh
Confidence            4689999999999998643 333 5778899999999999999987653

>COG0492 TrxB Thioredoxin reductase [Posttranslational modification, protein turnover, chaperones]

Probab=97.48  E-value=0.0022  Score=61.39  Aligned_cols=79  Identities=24%  Similarity=0.412  Sum_probs=61.9

Q ss_pred             CeEEEEcCChHHHHHHHHHHhCCCeEe-----------------------------------eeHHHHHHcCcEEEcCCe
Q 012165          208 KKVVVVGGGYIGMEVAAAAVGWKLDTT-----------------------------------RYEQLYQQNGVKFVKGAS  252 (469)
Q Consensus       208 ~~vvVvG~G~~g~e~A~~l~~~g~~v~-----------------------------------~~~~~l~~~gV~~~~~~~  252 (469)
                      ..++|||+|+.|+-.|-++.+.+.++.                                   .+.+..+..|+++.. ..
T Consensus         4 ~DviIIG~GPAGl~AAiya~r~~l~~~li~~~~~~gg~~~~~~~venypg~~~~~~g~~L~~~~~~~a~~~~~~~~~-~~   82 (305)
T COG0492           4 YDVIIIGGGPAGLTAAIYAARAGLKVVLILEGGEPGGQLTKTTDVENYPGFPGGILGPELMEQMKEQAEKFGVEIVE-DE   82 (305)
T ss_pred             eeEEEECCCHHHHHHHHHHHHcCCCcEEEEecCCcCCccccceeecCCCCCccCCchHHHHHHHHHHHhhcCeEEEE-EE
Confidence            469999999999999999999987622                                   344555567888887 56


Q ss_pred             EEEEEeCCCCcEEEEEcCCCCEEeCCEEEEccCCccCC
Q 012165          253 IKNLEAGSDGRVAAVKLEDGSTIDADTIVIGIGAKPTV  290 (469)
Q Consensus       253 v~~i~~~~~~~v~~v~~~~g~~i~~D~vi~a~G~~p~~  290 (469)
                      +.+++..++  ...|.+.+|+ +.++.||+|+|..+..
T Consensus        83 v~~v~~~~~--~F~v~t~~~~-~~ak~vIiAtG~~~~~  117 (305)
T COG0492          83 VEKVELEGG--PFKVKTDKGT-YEAKAVIIATGAGARK  117 (305)
T ss_pred             EEEEeecCc--eEEEEECCCe-EEEeEEEECcCCcccC
Confidence            777774322  5578888887 9999999999998753

>TIGR01316 gltA glutamate synthase (NADPH), homotetrameric

Probab=97.48  E-value=0.0007  Score=69.04  Aligned_cols=94  Identities=23%  Similarity=0.319  Sum_probs=65.8

Q ss_pred             CCCcEEEEcCcHHHHHHHHHHHHcCCCCCcEEEEcCCCCCCCCCCCCcccccCCCCCCCCCCCCCccccCCCCCCCCHhH
Q 012165           50 ENREFVIVGGGNAAGYAARTFVEHGMADGRLCIVSKEAYAPYERPALTKGYLFPLDKKPARLPGFHTCVGSGGERQTPEW  129 (469)
Q Consensus        50 ~~~~vvIIGgG~AGl~aA~~L~~~g~~~~~V~vie~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  129 (469)
                      ..++|+|||||..|+-+|..|++.|.   +|++++..+...     .           ...             ....+.
T Consensus       271 ~gk~VvVIGgG~~a~d~A~~l~~~G~---~Vtlv~~~~~~~-----~-----------~~~-------------~~~~~~  318 (449)
T TIGR01316       271 AGKSVVVIGGGNTAVDSARTALRLGA---EVHCLYRRTRED-----M-----------TAR-------------VEEIAH  318 (449)
T ss_pred             CCCeEEEECCCHHHHHHHHHHHHcCC---EEEEEeecCccc-----C-----------CCC-------------HHHHHH
Confidence            35799999999999999999999986   699998664310     0           000             012245


Q ss_pred             HHHCCcEEEeCCcEEEEeCC-Cc---EEEeC---------CC-----------eEEEeccEEeccCCCCC
Q 012165          130 YKEKGIEMIYQDPVTSIDIE-KQ---TLITN---------SG-----------KLLKYGSLIVATGCTAS  175 (469)
Q Consensus       130 ~~~~~i~~~~~~~v~~id~~-~~---~v~~~---------~g-----------~~~~yd~lVlAtG~~~~  175 (469)
                      +++.||+++.++.+.++..+ +.   .|++.         +|           .++++|.||+|+|..|.
T Consensus       319 l~~~GV~~~~~~~~~~i~~~~~g~v~~v~~~~~~~~~~~~~g~~~~~~~~~~~~~i~~D~Vi~AiG~~p~  388 (449)
T TIGR01316       319 AEEEGVKFHFLCQPVEIIGDEEGNVRAVKFRKMDCQEQIDSGERRFLPCGDAECKLEADAVIVAIGNGSN  388 (449)
T ss_pred             HHhCCCEEEeccCcEEEEEcCCCeEEEEEEEEEEecCcCCCCCeeeeecCCceEEEECCEEEECCCCCCC
Confidence            67889999988888887532 22   12221         22           36899999999998875

This protein is homologous to the small subunit of NADPH and NADH forms of glutamate synthase as found in eukaryotes and some bacteria. This protein is found in numerous species having no homolog of the glutamate synthase large subunit. The prototype of the family, from Pyrococcus sp. KOD1, was shown to be active as a homotetramer and to require NADPH.

>PRK05868 hypothetical protein; Validated

Probab=97.47  E-value=0.00076  Score=67.03  Aligned_cols=81  Identities=25%  Similarity=0.268  Sum_probs=64.2

Q ss_pred             CeEEEEcCChHHHHHHHHHHhCCCeEe-----------------------------------------------------
Q 012165          208 KKVVVVGGGYIGMEVAAAAVGWKLDTT-----------------------------------------------------  234 (469)
Q Consensus       208 ~~vvVvG~G~~g~e~A~~l~~~g~~v~-----------------------------------------------------  234 (469)
                      ++|+|||+|+.|+.+|..|++.|.+++                                                     
T Consensus         2 ~~V~IvGgG~aGl~~A~~L~~~G~~v~viE~~~~~~~~g~~i~~~~~a~~~L~~lGl~~~~~~~~~~~~~~~~~~~~g~~   81 (372)
T PRK05868          2 KTVVVSGASVAGTAAAYWLGRHGYSVTMVERHPGLRPGGQAIDVRGPALDVLERMGLLAAAQEHKTRIRGASFVDRDGNE   81 (372)
T ss_pred             CeEEEECCCHHHHHHHHHHHhCCCCEEEEcCCCCCCCCceeeeeCchHHHHHHhcCCHHHHHhhccCccceEEEeCCCCE
Confidence            479999999999999999999998886                                                     


Q ss_pred             ------------------------eeHHHHH---HcCcEEEcCCeEEEEEeCCCCcEEEEEcCCCCEEeCCEEEEccCCc
Q 012165          235 ------------------------RYEQLYQ---QNGVKFVKGASIKNLEAGSDGRVAAVKLEDGSTIDADTIVIGIGAK  287 (469)
Q Consensus       235 ------------------------~~~~~l~---~~gV~~~~~~~v~~i~~~~~~~v~~v~~~~g~~i~~D~vi~a~G~~  287 (469)
                                              .+.+.+.   ..|+++++++++++++.+ ++.+ .+.++||+++.+|+||-|-|.+
T Consensus        82 ~~~~~~~~~~~~~~~~~~~~i~R~~L~~~l~~~~~~~v~i~~~~~v~~i~~~-~~~v-~v~~~dg~~~~adlvIgADG~~  159 (372)
T PRK05868         82 LFRDTESTPTGGPVNSPDIELLRDDLVELLYGATQPSVEYLFDDSISTLQDD-GDSV-RVTFERAAAREFDLVIGADGLH  159 (372)
T ss_pred             EeecccccccCCCCCCceEEEEHHHHHHHHHHhccCCcEEEeCCEEEEEEec-CCeE-EEEECCCCeEEeCEEEECCCCC
Confidence                                    0112222   358999999999999854 3334 5888999999999999999987


Q ss_pred             cCC
Q 012165          288 PTV  290 (469)
Q Consensus       288 p~~  290 (469)
                      ...
T Consensus       160 S~v  162 (372)
T PRK05868        160 SNV  162 (372)
T ss_pred             chH
Confidence            653

>PRK10157 putative oxidoreductase FixC; Provisional

Probab=97.46  E-value=0.00092  Score=67.74  Aligned_cols=88  Identities=24%  Similarity=0.422  Sum_probs=66.0

Q ss_pred             CeEEEEcCChHHHHHHHHHHhCCCeEe-----------------------------------------------------
Q 012165          208 KKVVVVGGGYIGMEVAAAAVGWKLDTT-----------------------------------------------------  234 (469)
Q Consensus       208 ~~vvVvG~G~~g~e~A~~l~~~g~~v~-----------------------------------------------------  234 (469)
                      -.|+|||+|+.|+-+|..|++.|.+|.                                                     
T Consensus         6 ~DViIVGaGpAG~~aA~~La~~G~~V~llEr~~~~g~k~~~gg~l~~~~~e~l~~~~~~~~~~~~~~~~~~~~~~~~~~~   85 (428)
T PRK10157          6 FDAIIVGAGLAGSVAALVLAREGAQVLVIERGNSAGAKNVTGGRLYAHSLEHIIPGFADSAPVERLITHEKLAFMTEKSA   85 (428)
T ss_pred             CcEEEECcCHHHHHHHHHHHhCCCeEEEEEcCCCCCCcccccceechhhHHHHhhhhhhcCcccceeeeeeEEEEcCCCc
Confidence            479999999999999999998888775                                                     


Q ss_pred             ---------------------------eeHHHHHHcCcEEEcCCeEEEEEeCCCCcEEEEEcCCCCEEeCCEEEEccCCc
Q 012165          235 ---------------------------RYEQLYQQNGVKFVKGASIKNLEAGSDGRVAAVKLEDGSTIDADTIVIGIGAK  287 (469)
Q Consensus       235 ---------------------------~~~~~l~~~gV~~~~~~~v~~i~~~~~~~v~~v~~~~g~~i~~D~vi~a~G~~  287 (469)
                                                 .+.+..++.|++++.++.++++... ++.+..+. .+|.++.+|.||.|.|..
T Consensus        86 ~~~~~~~~~~~~~~~~~~~v~R~~fD~~L~~~a~~~Gv~i~~~~~V~~i~~~-~g~v~~v~-~~g~~i~A~~VI~A~G~~  163 (428)
T PRK10157         86 MTMDYCNGDETSPSQRSYSVLRSKFDAWLMEQAEEAGAQLITGIRVDNLVQR-DGKVVGVE-ADGDVIEAKTVILADGVN  163 (428)
T ss_pred             eeeccccccccCCCCCceeeEHHHHHHHHHHHHHHCCCEEECCCEEEEEEEe-CCEEEEEE-cCCcEEECCEEEEEeCCC
Confidence                                       1233445679999999999998754 45554444 567789999999999985


Q ss_pred             cCCchhhhcCCc
Q 012165          288 PTVSPFERVGLN  299 (469)
Q Consensus       288 p~~~~~~~~gl~  299 (469)
                      .  .+.+.+++.
T Consensus       164 s--~l~~~lgl~  173 (428)
T PRK10157        164 S--ILAEKLGMA  173 (428)
T ss_pred             H--HHHHHcCCC
Confidence            3  344555543

>PRK01438 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional

Probab=97.45  E-value=0.00025  Score=73.12  Aligned_cols=77  Identities=17%  Similarity=0.167  Sum_probs=56.6

Q ss_pred             CCCcEEEEcCcHHHHHHHHHHHHcCCCCCcEEEEcCCCCCCCCCCCCcccccCCCCCCCCCCCCCccccCCCCCCCCHhH
Q 012165           50 ENREFVIVGGGNAAGYAARTFVEHGMADGRLCIVSKEAYAPYERPALTKGYLFPLDKKPARLPGFHTCVGSGGERQTPEW  129 (469)
Q Consensus        50 ~~~~vvIIGgG~AGl~aA~~L~~~g~~~~~V~vie~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  129 (469)
                      ..++|+|||+|.+|+++|..|+++|+   +|+++|..+...                                .....+.
T Consensus        15 ~~~~v~viG~G~~G~~~A~~L~~~G~---~V~~~d~~~~~~--------------------------------~~~~~~~   59 (480)
T PRK01438         15 QGLRVVVAGLGVSGFAAADALLELGA---RVTVVDDGDDER--------------------------------HRALAAI   59 (480)
T ss_pred             CCCEEEEECCCHHHHHHHHHHHHCCC---EEEEEeCCchhh--------------------------------hHHHHHH
Confidence            34689999999999999999999987   799998653200                                0112345


Q ss_pred             HHHCCcEEEeCCcEEEEeCCCcEEEeCCCeEEEeccEEeccCCCCC
Q 012165          130 YKEKGIEMIYQDPVTSIDIEKQTLITNSGKLLKYGSLIVATGCTAS  175 (469)
Q Consensus       130 ~~~~~i~~~~~~~v~~id~~~~~v~~~~g~~~~yd~lVlAtG~~~~  175 (469)
                      +++.|++++.+..+.              ....+|.+|+++|..|.
T Consensus        60 l~~~gv~~~~~~~~~--------------~~~~~D~Vv~s~Gi~~~   91 (480)
T PRK01438         60 LEALGATVRLGPGPT--------------LPEDTDLVVTSPGWRPD   91 (480)
T ss_pred             HHHcCCEEEECCCcc--------------ccCCCCEEEECCCcCCC
Confidence            677899998875432              01458999999998876

>PRK11883 protoporphyrinogen oxidase; Reviewed

Probab=97.44  E-value=0.00015  Score=74.07  Aligned_cols=39  Identities=21%  Similarity=0.298  Sum_probs=33.6

Q ss_pred             CcEEEEcCcHHHHHHHHHHHHcCCCCCcEEEEcCCCCCCC
Q 012165           52 REFVIVGGGNAAGYAARTFVEHGMADGRLCIVSKEAYAPY   91 (469)
Q Consensus        52 ~~vvIIGgG~AGl~aA~~L~~~g~~~~~V~vie~~~~~~~   91 (469)
                      ++|+|||||+|||+||..|++.|. ..+|+|+|+++..+.
T Consensus         1 ~~v~IVGaGiaGL~aA~~L~~~G~-~~~V~vlEa~~~~GG   39 (451)
T PRK11883          1 KKVAIIGGGITGLSAAYRLHKKGP-DADITLLEASDRLGG   39 (451)
T ss_pred             CeEEEECCCHHHHHHHHHHHHhCC-CCCEEEEEcCCCCcc
Confidence            379999999999999999999873 348999999987653

>PRK08163 salicylate hydroxylase; Provisional

Probab=97.42  E-value=0.00089  Score=67.15  Aligned_cols=82  Identities=22%  Similarity=0.287  Sum_probs=63.7

Q ss_pred             CCeEEEEcCChHHHHHHHHHHhCCCeEe----------------------------------------------------
Q 012165          207 AKKVVVVGGGYIGMEVAAAAVGWKLDTT----------------------------------------------------  234 (469)
Q Consensus       207 ~~~vvVvG~G~~g~e~A~~l~~~g~~v~----------------------------------------------------  234 (469)
                      ..+|+|||+|+.|+-+|..|++.|.+++                                                    
T Consensus         4 ~~~V~IvGaGiaGl~~A~~L~~~g~~v~v~Er~~~~~~~g~gi~l~~~~~~~l~~lg~~~~~~~~~~~~~~~~~~~~~~~   83 (396)
T PRK08163          4 VTPVLIVGGGIGGLAAALALARQGIKVKLLEQAAEIGEIGAGIQLGPNAFSALDALGVGEAARQRAVFTDHLTMMDAVDA   83 (396)
T ss_pred             CCeEEEECCcHHHHHHHHHHHhCCCcEEEEeeCcccccccceeeeCchHHHHHHHcCChHHHHhhccCCcceEEEeCCCC
Confidence            5689999999999999999999988876                                                    


Q ss_pred             ------------------------------eeHHHHHHc-CcEEEcCCeEEEEEeCCCCcEEEEEcCCCCEEeCCEEEEc
Q 012165          235 ------------------------------RYEQLYQQN-GVKFVKGASIKNLEAGSDGRVAAVKLEDGSTIDADTIVIG  283 (469)
Q Consensus       235 ------------------------------~~~~~l~~~-gV~~~~~~~v~~i~~~~~~~v~~v~~~~g~~i~~D~vi~a  283 (469)
                                                    .+.+.+.+. +++++.++.+++++.+ ++.+ .+.+.+|+++.+|+||.|
T Consensus        84 ~~~~~~~~~~~~~~~~~~~~~~i~r~~l~~~L~~~~~~~~~v~~~~~~~v~~i~~~-~~~v-~v~~~~g~~~~ad~vV~A  161 (396)
T PRK08163         84 EEVVRIPTGQAFRARFGNPYAVIHRADIHLSLLEAVLDHPLVEFRTSTHVVGIEQD-GDGV-TVFDQQGNRWTGDALIGC  161 (396)
T ss_pred             CEEEEeccchhHHHhcCCcEEEEEHHHHHHHHHHHHHhcCCcEEEeCCEEEEEecC-CCce-EEEEcCCCEEecCEEEEC
Confidence                                          011112233 5899999999999854 3334 477888989999999999


Q ss_pred             cCCccCC
Q 012165          284 IGAKPTV  290 (469)
Q Consensus       284 ~G~~p~~  290 (469)
                      .|.....
T Consensus       162 dG~~S~~  168 (396)
T PRK08163        162 DGVKSVV  168 (396)
T ss_pred             CCcChHH
Confidence            9987643

>PRK07588 hypothetical protein; Provisional

Probab=97.41  E-value=0.00079  Score=67.43  Aligned_cols=46  Identities=24%  Similarity=0.304  Sum_probs=37.8

Q ss_pred             cCcEEEcCCeEEEEEeCCCCcEEEEEcCCCCEEeCCEEEEccCCccCC
Q 012165          243 NGVKFVKGASIKNLEAGSDGRVAAVKLEDGSTIDADTIVIGIGAKPTV  290 (469)
Q Consensus       243 ~gV~~~~~~~v~~i~~~~~~~v~~v~~~~g~~i~~D~vi~a~G~~p~~  290 (469)
                      .|+++++++++++++..+ +.+ .+.+++|+.+.+|+||-|-|.....
T Consensus       115 ~~v~i~~~~~v~~i~~~~-~~v-~v~~~~g~~~~~d~vIgADG~~S~v  160 (391)
T PRK07588        115 GQVETIFDDSIATIDEHR-DGV-RVTFERGTPRDFDLVIGADGLHSHV  160 (391)
T ss_pred             cCeEEEeCCEEeEEEECC-CeE-EEEECCCCEEEeCEEEECCCCCccc
Confidence            479999999999998653 334 4788999999999999999987654

>PRK07333 2-octaprenyl-6-methoxyphenyl hydroxylase; Provisional

Probab=97.41  E-value=0.00082  Score=67.60  Aligned_cols=59  Identities=25%  Similarity=0.428  Sum_probs=43.8

Q ss_pred             HHHHHHcCcEEEcCCeEEEEEeCCCCcEEEEEcCCCCEEeCCEEEEccCCccCCchhhhcCCc
Q 012165          237 EQLYQQNGVKFVKGASIKNLEAGSDGRVAAVKLEDGSTIDADTIVIGIGAKPTVSPFERVGLN  299 (469)
Q Consensus       237 ~~~l~~~gV~~~~~~~v~~i~~~~~~~v~~v~~~~g~~i~~D~vi~a~G~~p~~~~~~~~gl~  299 (469)
                      .+.+++.|++++.++++++++.+++ .+ .+.+++|+++.+|+||.|.|....  +.+.+++.
T Consensus       118 ~~~~~~~gv~v~~~~~v~~i~~~~~-~v-~v~~~~g~~~~ad~vI~AdG~~S~--vr~~~g~~  176 (403)
T PRK07333        118 RKRAEALGIDLREATSVTDFETRDE-GV-TVTLSDGSVLEARLLVAADGARSK--LRELAGIK  176 (403)
T ss_pred             HHHHHhCCCEEEcCCEEEEEEEcCC-EE-EEEECCCCEEEeCEEEEcCCCChH--HHHHcCCC
Confidence            3445567999999999999985433 33 577889989999999999998764  33444543

>PLN02529 lysine-specific histone demethylase 1

Probab=97.41  E-value=9.8e-05  Score=78.57  Aligned_cols=53  Identities=19%  Similarity=0.278  Sum_probs=41.8

Q ss_pred             cCCcccccccccccccccCCCCCCcEEEEcCcHHHHHHHHHHHHcCCCCCcEEEEcCCCCCC
Q 012165           29 HSSAKNFQRRGFVVAYSSFANENREFVIVGGGNAAGYAARTFVEHGMADGRLCIVSKEAYAP   90 (469)
Q Consensus        29 ~~~~~~~~~~~~~~~~~~~~~~~~~vvIIGgG~AGl~aA~~L~~~g~~~~~V~vie~~~~~~   90 (469)
                      |.+||....      ..+.....++|+|||||+||++||..|+++|+   +|+|+|+.+..+
T Consensus       144 c~vnp~~~~------~~~~~~~~~~v~viGaG~aGl~aA~~l~~~g~---~v~v~E~~~~~G  196 (738)
T PLN02529        144 FGVSPSFAS------PIPEEGTEGSVIIVGAGLAGLAAARQLLSFGF---KVVVLEGRNRPG  196 (738)
T ss_pred             eeecccccC------CCCcccCCCCEEEECcCHHHHHHHHHHHHcCC---cEEEEecCccCc
Confidence            777765322      12334567899999999999999999999998   799999987654

>TIGR02032 GG-red-SF geranylgeranyl reductase family

Probab=97.41  E-value=0.001  Score=63.50  Aligned_cols=78  Identities=26%  Similarity=0.360  Sum_probs=60.7

Q ss_pred             eEEEEcCChHHHHHHHHHHhCCCeEe------------------------------------------------------
Q 012165          209 KVVVVGGGYIGMEVAAAAVGWKLDTT------------------------------------------------------  234 (469)
Q Consensus       209 ~vvVvG~G~~g~e~A~~l~~~g~~v~------------------------------------------------------  234 (469)
                      .|+|||+|+.|+-+|..|++.|.+|.                                                      
T Consensus         2 dv~IiGaG~aGl~~A~~l~~~g~~v~vie~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   81 (295)
T TIGR02032         2 DVVVVGAGPAGASAAYRLADKGLRVLLLEKKSFPRYKPCGGALSPRVLEELDLPLELIVNLVRGARFFSPNGDSVEIPIE   81 (295)
T ss_pred             CEEEECCCHHHHHHHHHHHHCCCeEEEEeccCCCCcccccCccCHhHHHHhcCCchhhhhheeeEEEEcCCCcEEEeccC
Confidence            58999999999999999999887775                                                      


Q ss_pred             --------------eeHHHHHHcCcEEEcCCeEEEEEeCCCCcEEEEEcC-CCCEEeCCEEEEccCCcc
Q 012165          235 --------------RYEQLYQQNGVKFVKGASIKNLEAGSDGRVAAVKLE-DGSTIDADTIVIGIGAKP  288 (469)
Q Consensus       235 --------------~~~~~l~~~gV~~~~~~~v~~i~~~~~~~v~~v~~~-~g~~i~~D~vi~a~G~~p  288 (469)
                                    .+.+.+++.|++++.+++++++...++ .+ .+.+. ++.++.+|.||.|.|...
T Consensus        82 ~~~~~~i~r~~l~~~l~~~~~~~gv~~~~~~~v~~~~~~~~-~~-~~~~~~~~~~~~a~~vv~a~G~~s  148 (295)
T TIGR02032        82 TELAYVIDRDAFDEQLAERAQEAGAELRLGTTVLDVEIHDD-RV-VVIVRGGEGTVTAKIVIGADGSRS  148 (295)
T ss_pred             CCcEEEEEHHHHHHHHHHHHHHcCCEEEeCcEEeeEEEeCC-EE-EEEEcCccEEEEeCEEEECCCcch
Confidence                          234455668999999999999875433 33 23333 345799999999999865

This model represents a subfamily which includes geranylgeranyl reductases involved in chlorophyll and bacteriochlorophyll biosynthesis as well as other related enzymes which may also act on geranylgeranyl groups or related substrates.

>PRK11259 solA N-methyltryptophan oxidase; Provisional

Probab=97.40  E-value=0.00017  Score=71.77  Aligned_cols=50  Identities=26%  Similarity=0.410  Sum_probs=38.8

Q ss_pred             HHHHHHcCcEEEcCCeEEEEEeCCCCcEEEEEcCCCCEEeCCEEEEccCCccC
Q 012165          237 EQLYQQNGVKFVKGASIKNLEAGSDGRVAAVKLEDGSTIDADTIVIGIGAKPT  289 (469)
Q Consensus       237 ~~~l~~~gV~~~~~~~v~~i~~~~~~~v~~v~~~~g~~i~~D~vi~a~G~~p~  289 (469)
                      .+.+.+.|++++.++++++++.. ++.+ .+.+++| .+.+|.||+|+|....
T Consensus       156 ~~~~~~~gv~i~~~~~v~~i~~~-~~~~-~v~~~~g-~~~a~~vV~A~G~~~~  205 (376)
T PRK11259        156 LRLAREAGAELLFNEPVTAIEAD-GDGV-TVTTADG-TYEAKKLVVSAGAWVK  205 (376)
T ss_pred             HHHHHHCCCEEECCCEEEEEEee-CCeE-EEEeCCC-EEEeeEEEEecCcchh
Confidence            34566789999999999999864 3333 5777777 7999999999997643

>PRK12779 putative bifunctional glutamate synthase subunit beta/2-polyprenylphenol hydroxylase; Provisional

Probab=97.38  E-value=0.00034  Score=77.17  Aligned_cols=74  Identities=27%  Similarity=0.260  Sum_probs=58.8

Q ss_pred             cCCeEEEEcCChHHHHHHHHHHhCCCeEe---------------------------eeHHHHHHcCcEEEcCCeEEEEEe
Q 012165          206 KAKKVVVVGGGYIGMEVAAAAVGWKLDTT---------------------------RYEQLYQQNGVKFVKGASIKNLEA  258 (469)
Q Consensus       206 ~~~~vvVvG~G~~g~e~A~~l~~~g~~v~---------------------------~~~~~l~~~gV~~~~~~~v~~i~~  258 (469)
                      .+++|+|||+|+.|+.+|..|++.|.+|+                           ...+.+++.||++++++.+..   
T Consensus       305 ~gkkVaVIGsGPAGLsaA~~Lar~G~~VtVfE~~~~~GG~l~yGIP~~rlp~~vi~~~i~~l~~~Gv~f~~n~~vG~---  381 (944)
T PRK12779        305 VKPPIAVVGSGPSGLINAYLLAVEGFPVTVFEAFHDLGGVLRYGIPEFRLPNQLIDDVVEKIKLLGGRFVKNFVVGK---  381 (944)
T ss_pred             CCCeEEEECCCHHHHHHHHHHHHCCCeEEEEeeCCCCCceEEccCCCCcChHHHHHHHHHHHHhhcCeEEEeEEecc---
Confidence            47999999999999999999999999998                           223567788999998854311   


Q ss_pred             CCCCcEEEEEcCCCCEEeCCEEEEccCCc-cC
Q 012165          259 GSDGRVAAVKLEDGSTIDADTIVIGIGAK-PT  289 (469)
Q Consensus       259 ~~~~~v~~v~~~~g~~i~~D~vi~a~G~~-p~  289 (469)
                             .+.+++.....+|.||+|+|.. |.
T Consensus       382 -------dit~~~l~~~~yDAV~LAtGA~~pr  406 (944)
T PRK12779        382 -------TATLEDLKAAGFWKIFVGTGAGLPT  406 (944)
T ss_pred             -------EEeHHHhccccCCEEEEeCCCCCCC
Confidence                   3556666566899999999984 54

>KOG1335 consensus Dihydrolipoamide dehydrogenase [Energy production and conversion]

Probab=97.37  E-value=0.00038  Score=66.39  Aligned_cols=99  Identities=15%  Similarity=0.220  Sum_probs=72.1

Q ss_pred             CCCCcEEEEcCcHHHHHHHHHHHHcCCCCCcEEEEcCCCCCCCCCCCCcccccCCCCCCCCCCCCCccccCCCCCCCCHh
Q 012165           49 NENREFVIVGGGNAAGYAARTFVEHGMADGRLCIVSKEAYAPYERPALTKGYLFPLDKKPARLPGFHTCVGSGGERQTPE  128 (469)
Q Consensus        49 ~~~~~vvIIGgG~AGl~aA~~L~~~g~~~~~V~vie~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  128 (469)
                      ..+++++|||||.-||..+.-..+.|-   +||+||-.+...-           ..+.   ++           ......
T Consensus       209 ~vPk~~~viG~G~IGLE~gsV~~rLGs---eVT~VEf~~~i~~-----------~mD~---Ei-----------sk~~qr  260 (506)
T KOG1335|consen  209 EVPKKLTVIGAGYIGLEMGSVWSRLGS---EVTVVEFLDQIGG-----------VMDG---EI-----------SKAFQR  260 (506)
T ss_pred             hCcceEEEEcCceeeeehhhHHHhcCC---eEEEEEehhhhcc-----------ccCH---HH-----------HHHHHH
Confidence            446899999999999999999889886   8999995543210           0000   00           122456


Q ss_pred             HHHHCCcEEEeCCcEEEEeCCCc---EEEeCC---C--eEEEeccEEeccCCCCC
Q 012165          129 WYKEKGIEMIYQDPVTSIDIEKQ---TLITNS---G--KLLKYGSLIVATGCTAS  175 (469)
Q Consensus       129 ~~~~~~i~~~~~~~v~~id~~~~---~v~~~~---g--~~~~yd~lVlAtG~~~~  175 (469)
                      .+.+.+++|.++++|....++..   .|.+++   +  +++++|.|++++|-+|.
T Consensus       261 ~L~kQgikF~l~tkv~~a~~~~dg~v~i~ve~ak~~k~~tle~DvlLVsiGRrP~  315 (506)
T KOG1335|consen  261 VLQKQGIKFKLGTKVTSATRNGDGPVEIEVENAKTGKKETLECDVLLVSIGRRPF  315 (506)
T ss_pred             HHHhcCceeEeccEEEEeeccCCCceEEEEEecCCCceeEEEeeEEEEEccCccc
Confidence            67889999999999999987654   344432   2  46999999999998875

>PLN02568 polyamine oxidase

Probab=97.36  E-value=0.00025  Score=73.58  Aligned_cols=45  Identities=20%  Similarity=0.148  Sum_probs=36.3

Q ss_pred             CCCCCCcEEEEcCcHHHHHHHHHHHHcCC--CCCcEEEEcCCCCCCC
Q 012165           47 FANENREFVIVGGGNAAGYAARTFVEHGM--ADGRLCIVSKEAYAPY   91 (469)
Q Consensus        47 ~~~~~~~vvIIGgG~AGl~aA~~L~~~g~--~~~~V~vie~~~~~~~   91 (469)
                      |+++.++|+|||||+|||+||..|.+.|.  +..+|+|+|+....+.
T Consensus         1 ~~~~~~~v~iiGaG~aGl~aa~~L~~~g~~~~~~~v~v~E~~~~~GG   47 (539)
T PLN02568          1 MVAKKPRIVIIGAGMAGLTAANKLYTSSAANDMFELTVVEGGDRIGG   47 (539)
T ss_pred             CCCCCCcEEEECCCHHHHHHHHHHHhcccccCCceEEEEeCCCCcCC
Confidence            34556899999999999999999999871  1237999999887653

>COG0493 GltD NADPH-dependent glutamate synthase beta chain and related oxidoreductases [Amino acid transport and metabolism / General function prediction only]

Probab=97.36  E-value=0.00023  Score=71.75  Aligned_cols=103  Identities=29%  Similarity=0.364  Sum_probs=69.1

Q ss_pred             CCeEEEeccEEeccCCCCCcCCCCCCCCcCcEEEecCHHHHHHHHHhhhcCCeEEEEcCChHHHHHHHHHHhCCCeEe--
Q 012165          157 SGKLLKYGSLIVATGCTASRFPEKIGGYLPGVHYIRDVADADALISSLEKAKKVVVVGGGYIGMEVAAAAVGWKLDTT--  234 (469)
Q Consensus       157 ~g~~~~yd~lVlAtG~~~~~~~~~~g~~~~~v~~~~~~~~~~~~~~~~~~~~~vvVvG~G~~g~e~A~~l~~~g~~v~--  234 (469)
                      .+..+.++.|..+.|........+++. .++                ...+++|+|||+|+.|+.+|..|++.|++|+  
T Consensus        90 ~~~~v~i~~le~~i~d~~~~~g~i~~~-~~~----------------~~tg~~VaviGaGPAGl~~a~~L~~~G~~Vtv~  152 (457)
T COG0493          90 EELPVNIGALERAIGDKADREGWIPGE-LPG----------------SRTGKKVAVIGAGPAGLAAADDLSRAGHDVTVF  152 (457)
T ss_pred             CCCchhhhhHHHHHhhHHHHhCCCCCC-CCC----------------CCCCCEEEEECCCchHhhhHHHHHhCCCeEEEe
Confidence            344567777777777553322222221 111                1246899999999999999999999999998  


Q ss_pred             -------------------------eeHHHHHHcCcEEEcCCeEEEEEeCCCCcEEEEEcCCCCEEeCCEEEEccCCc
Q 012165          235 -------------------------RYEQLYQQNGVKFVKGASIKNLEAGSDGRVAAVKLEDGSTIDADTIVIGIGAK  287 (469)
Q Consensus       235 -------------------------~~~~~l~~~gV~~~~~~~v~~i~~~~~~~v~~v~~~~g~~i~~D~vi~a~G~~  287 (469)
                                               ...+.|++.|++|++++.+-.          .+++++= .-++|.|++++|..
T Consensus       153 e~~~~~GGll~yGIP~~kl~k~i~d~~i~~l~~~Gv~~~~~~~vG~----------~it~~~L-~~e~Dav~l~~G~~  219 (457)
T COG0493         153 ERVALDGGLLLYGIPDFKLPKDILDRRLELLERSGVEFKLNVRVGR----------DITLEEL-LKEYDAVFLATGAG  219 (457)
T ss_pred             CCcCCCceeEEecCchhhccchHHHHHHHHHHHcCeEEEEcceECC----------cCCHHHH-HHhhCEEEEecccc
Confidence                                     345778899999999875531          0122211 23459999999975

>PRK09853 putative selenate reductase subunit YgfK; Provisional

Probab=97.34  E-value=0.00062  Score=74.51  Aligned_cols=72  Identities=31%  Similarity=0.363  Sum_probs=55.6

Q ss_pred             cCCeEEEEcCChHHHHHHHHHHhCCCeEe---------------------------eeHHHHHHcCcEEEcCCeEEEEEe
Q 012165          206 KAKKVVVVGGGYIGMEVAAAAVGWKLDTT---------------------------RYEQLYQQNGVKFVKGASIKNLEA  258 (469)
Q Consensus       206 ~~~~vvVvG~G~~g~e~A~~l~~~g~~v~---------------------------~~~~~l~~~gV~~~~~~~v~~i~~  258 (469)
                      .+++|+|||+|+.|+.+|..|++.|.+|+                           ...+.+++.||++++++.+ .+. 
T Consensus       538 tgKkVaIIGgGPAGLsAA~~Lar~G~~VtV~Ek~~~~GG~lr~~IP~~Rlp~evL~~die~l~~~GVe~~~gt~V-di~-  615 (1019)
T PRK09853        538 SRKKVAVIGAGPAGLAAAYFLARAGHPVTVFEREENAGGVVKNIIPQFRIPAELIQHDIEFVKAHGVKFEFGCSP-DLT-  615 (1019)
T ss_pred             CCCcEEEECCCHHHHHHHHHHHHcCCeEEEEecccccCcceeeecccccccHHHHHHHHHHHHHcCCEEEeCcee-EEE-
Confidence            46899999999999999999999999887                           1124567789999998765 222 


Q ss_pred             CCCCcEEEEEcCCCCEEeCCEEEEccCCccC
Q 012165          259 GSDGRVAAVKLEDGSTIDADTIVIGIGAKPT  289 (469)
Q Consensus       259 ~~~~~v~~v~~~~g~~i~~D~vi~a~G~~p~  289 (469)
                                +.+.....+|.||+|+|..+.
T Consensus       616 ----------le~L~~~gYDaVILATGA~~~  636 (1019)
T PRK09853        616 ----------VEQLKNEGYDYVVVAIGADKN  636 (1019)
T ss_pred             ----------hhhheeccCCEEEECcCCCCC
Confidence                      223334569999999999864

>PRK07190 hypothetical protein; Provisional

Probab=97.34  E-value=0.0012  Score=67.90  Aligned_cols=79  Identities=22%  Similarity=0.371  Sum_probs=63.5

Q ss_pred             CeEEEEcCChHHHHHHHHHHhCCCeEe-----------------------------------------------------
Q 012165          208 KKVVVVGGGYIGMEVAAAAVGWKLDTT-----------------------------------------------------  234 (469)
Q Consensus       208 ~~vvVvG~G~~g~e~A~~l~~~g~~v~-----------------------------------------------------  234 (469)
                      ..|+|||+|++|+-+|..|++.|.++.                                                     
T Consensus         6 ~dVlIVGAGPaGL~lA~~Lar~Gi~V~llEr~~~~~~~gra~~l~~~tle~L~~lGl~~~l~~~~~~~~~~~~~~~g~~i   85 (487)
T PRK07190          6 TDVVIIGAGPVGLMCAYLGQLCGLNTVIVDKSDGPLEVGRADALNARTLQLLELVDLFDELYPLGKPCNTSSVWANGKFI   85 (487)
T ss_pred             ceEEEECCCHHHHHHHHHHHHcCCCEEEEeCCCcccccccceEeCHHHHHHHHhcChHHHHHhhCccceeEEEecCCceE
Confidence            479999999999999999999988775                                                     


Q ss_pred             ----------------------------eeHHHHHHcCcEEEcCCeEEEEEeCCCCcEEEEEcCCCCEEeCCEEEEccCC
Q 012165          235 ----------------------------RYEQLYQQNGVKFVKGASIKNLEAGSDGRVAAVKLEDGSTIDADTIVIGIGA  286 (469)
Q Consensus       235 ----------------------------~~~~~l~~~gV~~~~~~~v~~i~~~~~~~v~~v~~~~g~~i~~D~vi~a~G~  286 (469)
                                                  .+.+.+++.|++++.++++++++.++++.  .+.+.+|+++.+++||.|.|.
T Consensus        86 ~~~~~~~~~~~~~~~~~~~~~~q~~le~~L~~~~~~~Gv~v~~~~~v~~l~~~~~~v--~v~~~~g~~v~a~~vVgADG~  163 (487)
T PRK07190         86 SRQSSWWEELEGCLHKHFLMLGQSYVEKLLDDKLKEAGAAVKRNTSVVNIELNQAGC--LTTLSNGERIQSRYVIGADGS  163 (487)
T ss_pred             eeccccCccCCcCCCCceEecCHHHHHHHHHHHHHHCCCEEEeCCEEEEEEEcCCee--EEEECCCcEEEeCEEEECCCC
Confidence                                        11233456799999999999998765543  355677889999999999998


Q ss_pred             cc
Q 012165          287 KP  288 (469)
Q Consensus       287 ~p  288 (469)
                      +.
T Consensus       164 ~S  165 (487)
T PRK07190        164 RS  165 (487)
T ss_pred             CH
Confidence            65

>PLN02268 probable polyamine oxidase

Probab=97.34  E-value=0.00024  Score=72.31  Aligned_cols=38  Identities=18%  Similarity=0.327  Sum_probs=34.0

Q ss_pred             CcEEEEcCcHHHHHHHHHHHHcCCCCCcEEEEcCCCCCCCC
Q 012165           52 REFVIVGGGNAAGYAARTFVEHGMADGRLCIVSKEAYAPYE   92 (469)
Q Consensus        52 ~~vvIIGgG~AGl~aA~~L~~~g~~~~~V~vie~~~~~~~~   92 (469)
                      ++|+|||||+|||+||..|.+.|+   +|+|+|+.+..+..
T Consensus         1 ~~VvVIGaGisGL~aA~~L~~~g~---~v~vlEa~~r~GGr   38 (435)
T PLN02268          1 PSVIVIGGGIAGIAAARALHDASF---KVTLLESRDRIGGR   38 (435)
T ss_pred             CCEEEECCCHHHHHHHHHHHhCCC---eEEEEeCCCCCCce
Confidence            479999999999999999999887   79999999887643

>PRK06184 hypothetical protein; Provisional

Probab=97.33  E-value=0.0012  Score=68.39  Aligned_cols=79  Identities=20%  Similarity=0.327  Sum_probs=62.9

Q ss_pred             CeEEEEcCChHHHHHHHHHHhCCCeEe-----------------------------------------------------
Q 012165          208 KKVVVVGGGYIGMEVAAAAVGWKLDTT-----------------------------------------------------  234 (469)
Q Consensus       208 ~~vvVvG~G~~g~e~A~~l~~~g~~v~-----------------------------------------------------  234 (469)
                      -+|+|||+|+.|+-+|..|++.|.+++                                                     
T Consensus         4 ~dVlIVGaGpaGl~~A~~La~~Gi~v~viE~~~~~~~~~ra~~l~~~~~e~l~~lGl~~~l~~~~~~~~~~~~~~~~~~~   83 (502)
T PRK06184          4 TDVLIVGAGPTGLTLAIELARRGVSFRLIEKAPEPFPGSRGKGIQPRTQEVFDDLGVLDRVVAAGGLYPPMRIYRDDGSV   83 (502)
T ss_pred             CcEEEECCCHHHHHHHHHHHHCCCcEEEEeCCCCCCcCccceeecHHHHHHHHHcCcHHHHHhcCccccceeEEeCCceE
Confidence            469999999999999999999999886                                                     


Q ss_pred             ------------------------------eeHHHHHHcCcEEEcCCeEEEEEeCCCCcEEEEEc---CCCCEEeCCEEE
Q 012165          235 ------------------------------RYEQLYQQNGVKFVKGASIKNLEAGSDGRVAAVKL---EDGSTIDADTIV  281 (469)
Q Consensus       235 ------------------------------~~~~~l~~~gV~~~~~~~v~~i~~~~~~~v~~v~~---~~g~~i~~D~vi  281 (469)
                                                    .+.+.+++.|++++.++++++++.++++ + .+.+   .+++++.+|+||
T Consensus        84 ~~~~~~~~~~~~~~~~~~~~~~i~q~~le~~L~~~l~~~gv~i~~~~~v~~i~~~~~~-v-~v~~~~~~~~~~i~a~~vV  161 (502)
T PRK06184         84 AESDMFAHLEPTPDEPYPLPLMVPQWRTERILRERLAELGHRVEFGCELVGFEQDADG-V-TARVAGPAGEETVRARYLV  161 (502)
T ss_pred             EEeeccccccCCCCCCCCcceecCHHHHHHHHHHHHHHCCCEEEeCcEEEEEEEcCCc-E-EEEEEeCCCeEEEEeCEEE
Confidence                                          1223345679999999999999865444 3 3444   556789999999


Q ss_pred             EccCCcc
Q 012165          282 IGIGAKP  288 (469)
Q Consensus       282 ~a~G~~p  288 (469)
                      .|.|...
T Consensus       162 gADG~~S  168 (502)
T PRK06184        162 GADGGRS  168 (502)
T ss_pred             ECCCCch
Confidence            9999875

>PLN02785 Protein HOTHEAD

Probab=97.33  E-value=0.0037  Score=65.64  Aligned_cols=36  Identities=19%  Similarity=0.462  Sum_probs=31.6

Q ss_pred             CCCCcEEEEcCcHHHHHHHHHHHHcCCCCCcEEEEcCCCC
Q 012165           49 NENREFVIVGGGNAAGYAARTFVEHGMADGRLCIVSKEAY   88 (469)
Q Consensus        49 ~~~~~vvIIGgG~AGl~aA~~L~~~g~~~~~V~vie~~~~   88 (469)
                      ...+|++|||||.||+.+|.+|.+ ..   +|+|||+.+.
T Consensus        53 ~~~yD~IIVG~G~aG~~lA~~Ls~-~~---~VLllE~G~~   88 (587)
T PLN02785         53 DSAYDYIVVGGGTAGCPLAATLSQ-NF---SVLLLERGGV   88 (587)
T ss_pred             cccCCEEEECcCHHHHHHHHHHhc-CC---cEEEEecCCC
Confidence            346999999999999999999998 34   7999999864

>PLN02985 squalene monooxygenase

Probab=97.32  E-value=0.0003  Score=72.69  Aligned_cols=39  Identities=18%  Similarity=0.377  Sum_probs=34.5

Q ss_pred             CCCCCCcEEEEcCcHHHHHHHHHHHHcCCCCCcEEEEcCCCC
Q 012165           47 FANENREFVIVGGGNAAGYAARTFVEHGMADGRLCIVSKEAY   88 (469)
Q Consensus        47 ~~~~~~~vvIIGgG~AGl~aA~~L~~~g~~~~~V~vie~~~~   88 (469)
                      .....+||+|||||++|+++|..|++.|+   +|+|+|+.+.
T Consensus        39 ~~~~~~DViIVGAG~aGlalA~aLa~~G~---~V~vlEr~~~   77 (514)
T PLN02985         39 RKDGATDVIIVGAGVGGSALAYALAKDGR---RVHVIERDLR   77 (514)
T ss_pred             CcCCCceEEEECCCHHHHHHHHHHHHcCC---eEEEEECcCC
Confidence            44567899999999999999999999987   7999998754

>PRK05335 tRNA (uracil-5-)-methyltransferase Gid; Reviewed

Probab=97.31  E-value=0.00027  Score=70.00  Aligned_cols=35  Identities=17%  Similarity=0.275  Sum_probs=31.7

Q ss_pred             CCcEEEEcCcHHHHHHHHHHHHcCCCCCcEEEEcCCCC
Q 012165           51 NREFVIVGGGNAAGYAARTFVEHGMADGRLCIVSKEAY   88 (469)
Q Consensus        51 ~~~vvIIGgG~AGl~aA~~L~~~g~~~~~V~vie~~~~   88 (469)
                      +.||+|||||++|+.+|..|++.|+   +|+|+|..+.
T Consensus         2 ~~dVvVIGGGlAGleAAlaLAr~Gl---~V~LiE~rp~   36 (436)
T PRK05335          2 MKPVNVIGAGLAGSEAAWQLAKRGV---PVELYEMRPV   36 (436)
T ss_pred             CCcEEEECCCHHHHHHHHHHHhCCC---cEEEEEccCc
Confidence            4699999999999999999999998   7999997654

>PRK01438 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional

Probab=97.31  E-value=0.00051  Score=70.82  Aligned_cols=71  Identities=23%  Similarity=0.283  Sum_probs=57.3

Q ss_pred             cCCeEEEEcCChHHHHHHHHHHhCCCeEe-----------eeHHHHHHcCcEEEcCCeEEEEEeCCCCcEEEEEcCCCCE
Q 012165          206 KAKKVVVVGGGYIGMEVAAAAVGWKLDTT-----------RYEQLYQQNGVKFVKGASIKNLEAGSDGRVAAVKLEDGST  274 (469)
Q Consensus       206 ~~~~vvVvG~G~~g~e~A~~l~~~g~~v~-----------~~~~~l~~~gV~~~~~~~v~~i~~~~~~~v~~v~~~~g~~  274 (469)
                      .+++++|+|+|.+|+++|..|.++|.+|+           .+.+.+++.||+++++..+.                  ..
T Consensus        15 ~~~~v~viG~G~~G~~~A~~L~~~G~~V~~~d~~~~~~~~~~~~~l~~~gv~~~~~~~~~------------------~~   76 (480)
T PRK01438         15 QGLRVVVAGLGVSGFAAADALLELGARVTVVDDGDDERHRALAAILEALGATVRLGPGPT------------------LP   76 (480)
T ss_pred             CCCEEEEECCCHHHHHHHHHHHHCCCEEEEEeCCchhhhHHHHHHHHHcCCEEEECCCcc------------------cc
Confidence            57899999999999999999999999987           12356778899998775332                  12


Q ss_pred             EeCCEEEEccCCccCCchhh
Q 012165          275 IDADTIVIGIGAKPTVSPFE  294 (469)
Q Consensus       275 i~~D~vi~a~G~~p~~~~~~  294 (469)
                      ..+|+||+++|..|+.+++.
T Consensus        77 ~~~D~Vv~s~Gi~~~~~~~~   96 (480)
T PRK01438         77 EDTDLVVTSPGWRPDAPLLA   96 (480)
T ss_pred             CCCCEEEECCCcCCCCHHHH
Confidence            45899999999999988643

>PF00743 FMO-like: Flavin-binding monooxygenase-like; InterPro: IPR020946 Flavin-containing monooxygenases (FMOs) constitute a family of xenobiotic-metabolising enzymes []

Probab=97.31  E-value=0.0018  Score=67.12  Aligned_cols=118  Identities=25%  Similarity=0.335  Sum_probs=70.5

Q ss_pred             CCeEEEEcCChHHHHHHHHHHhCCCeEe----------------------------------------------------
Q 012165          207 AKKVVVVGGGYIGMEVAAAAVGWKLDTT----------------------------------------------------  234 (469)
Q Consensus       207 ~~~vvVvG~G~~g~e~A~~l~~~g~~v~----------------------------------------------------  234 (469)
                      .|+|+|||+|++|+-.+..|.+.|.+++                                                    
T Consensus         1 ~krVaVIGaG~sGL~a~k~l~e~g~~~~~fE~~~~iGG~W~~~~~~~~g~~~~y~sl~~n~sk~~~~fsdfp~p~~~p~f   80 (531)
T PF00743_consen    1 AKRVAVIGAGPSGLAAAKNLLEEGLEVTCFEKSDDIGGLWRYTENPEDGRSSVYDSLHTNTSKEMMAFSDFPFPEDYPDF   80 (531)
T ss_dssp             --EEEEE--SHHHHHHHHHHHHTT-EEEEEESSSSSSGGGCHSTTCCCSEGGGSTT-B-SS-GGGSCCTTS-HCCCCSSS
T ss_pred             CCEEEEECccHHHHHHHHHHHHCCCCCeEEecCCCCCccCeeCCcCCCCccccccceEEeeCchHhcCCCcCCCCCCCCC
Confidence            3799999999999999999999998887                                                    


Q ss_pred             --------eeHHHHHHcCc--EEEcCCeEEEEEeCCCC---cEEEEEcC-CC--CEEeCCEEEEccCCc--cCCchhhhc
Q 012165          235 --------RYEQLYQQNGV--KFVKGASIKNLEAGSDG---RVAAVKLE-DG--STIDADTIVIGIGAK--PTVSPFERV  296 (469)
Q Consensus       235 --------~~~~~l~~~gV--~~~~~~~v~~i~~~~~~---~v~~v~~~-~g--~~i~~D~vi~a~G~~--p~~~~~~~~  296 (469)
                              .++...+..++  .++++++|.+++..++.   ..-.|++. +|  ++..+|.||+|+|.-  |+.+.-.--
T Consensus        81 ~~~~~v~~Yl~~Ya~~f~L~~~I~fnt~V~~v~~~~d~~~~~~W~V~~~~~g~~~~~~fD~VvvatG~~~~P~~P~~~~~  160 (531)
T PF00743_consen   81 PSHSEVLEYLESYAEHFGLRKHIRFNTEVVSVERDPDFSATGKWEVTTENDGKEETEEFDAVVVATGHFSKPNIPEPSFP  160 (531)
T ss_dssp             EBHHHHHHHHHHHHHHTTGGGGEETSEEEEEEEEETTTT-ETEEEEEETTTTEEEEEEECEEEEEE-SSSCESB-----C
T ss_pred             CCHHHHHHHHHHHHhhhCCcceEEEccEEeEeeeccccCCCceEEEEeecCCeEEEEEeCeEEEcCCCcCCCCCChhhhh
Confidence                    34445555555  57899999999875432   12245554 34  245689999999974  554320012


Q ss_pred             CCcccCCCEEeCCCCCC----CCCceEEeccc
Q 012165          297 GLNSSVGGIQVDGQFRT----RMPGIFAIGDV  324 (469)
Q Consensus       297 gl~~~~g~i~Vd~~~~t----~~~~Vfa~GD~  324 (469)
                      |++.=.|.+.-...++.    ...+|-++|-.
T Consensus       161 G~e~F~G~i~HS~~yr~~~~f~gKrVlVVG~g  192 (531)
T PF00743_consen  161 GLEKFKGEIIHSKDYRDPEPFKGKRVLVVGGG  192 (531)
T ss_dssp             TGGGHCSEEEEGGG--TGGGGTTSEEEEESSS
T ss_pred             hhhcCCeeEEccccCcChhhcCCCEEEEEeCC
Confidence            33332455554444443    34678887753

Using an NADPH cofactor and FAD prosthetic group, these microsomal proteins catalyse the oxygenation of nucleophilic nitrogen, sulphur, phosphorous and selenium atoms in a range of structurally diverse compounds. FMOs have been implicated in the metabolism of a number of pharmaceuticals, pesticides and toxicants. In man, lack of hepatic FMO-catalysed trimethylamine metabolism results in trimethylaminuria (fish odour syndrome). Five mammalian forms of FMO are now known and have been designated FMO1-FMO5 [, , , , ]. This is a recent nomenclature based on comparison of amino acid sequences, and has been introduced in an attempt to eliminate confusion inherent in multiple, laboratory-specific designations and tissue-based classifications []. Following the determination of the complete nucleotide sequence of Saccharomyces cerevisiae (Baker's yeast) [], a novel gene was found to encode a protein with similarity to mammalian monooygenases.; GO: 0004499 flavin-containing monooxygenase activity, 0050660 flavin adenine dinucleotide binding, 0050661 NADP binding, 0055114 oxidation-reduction process; PDB: 2GVC_E 1VQW_B 2GV8_B 2XVI_B 2XVH_B 2XLS_A 2XLR_A 2XLU_D 2XLP_B 2XVE_A ....

>PRK05192 tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA; Validated

Probab=97.30  E-value=0.0011  Score=68.65  Aligned_cols=77  Identities=29%  Similarity=0.476  Sum_probs=59.5

Q ss_pred             CeEEEEcCChHHHHHHHHHHhCCCeEe-----------------------------------------------------
Q 012165          208 KKVVVVGGGYIGMEVAAAAVGWKLDTT-----------------------------------------------------  234 (469)
Q Consensus       208 ~~vvVvG~G~~g~e~A~~l~~~g~~v~-----------------------------------------------------  234 (469)
                      -.|+|||||+.|+++|..+++.|.+|.                                                     
T Consensus         5 yDVIVVGGGpAG~eAA~~aAR~G~kV~LiE~~~d~iG~m~CnpsiGG~akg~lvrEidalGg~~g~~~d~~giq~r~ln~   84 (618)
T PRK05192          5 YDVIVVGGGHAGCEAALAAARMGAKTLLLTHNLDTIGQMSCNPAIGGIAKGHLVREIDALGGEMGKAIDKTGIQFRMLNT   84 (618)
T ss_pred             ceEEEECchHHHHHHHHHHHHcCCcEEEEecccccccccCCccccccchhhHHHHHHHhcCCHHHHHHhhccCceeeccc
Confidence            369999999999999999999888775                                                     


Q ss_pred             --------------------eeHHHHHH-cCcEEEcCCeEEEEEeCCCCcEEEEEcCCCCEEeCCEEEEccCC
Q 012165          235 --------------------RYEQLYQQ-NGVKFVKGASIKNLEAGSDGRVAAVKLEDGSTIDADTIVIGIGA  286 (469)
Q Consensus       235 --------------------~~~~~l~~-~gV~~~~~~~v~~i~~~~~~~v~~v~~~~g~~i~~D~vi~a~G~  286 (469)
                                          .+.+.+++ .|++++. ..+.++.. +++.+.+|.+.+|..+.|+.||+|+|.
T Consensus        85 skGpAV~s~RaQiDr~ly~kaL~e~L~~~~nV~I~q-~~V~~Li~-e~grV~GV~t~dG~~I~Ak~VIlATGT  155 (618)
T PRK05192         85 SKGPAVRALRAQADRKLYRAAMREILENQPNLDLFQ-GEVEDLIV-ENGRVVGVVTQDGLEFRAKAVVLTTGT  155 (618)
T ss_pred             CCCCceeCcHHhcCHHHHHHHHHHHHHcCCCcEEEE-eEEEEEEe-cCCEEEEEEECCCCEEECCEEEEeeCc
Confidence                                11122233 4788754 46777764 366777899999999999999999994

>PRK12831 putative oxidoreductase; Provisional

Probab=97.30  E-value=0.0014  Score=67.07  Aligned_cols=94  Identities=26%  Similarity=0.309  Sum_probs=63.2

Q ss_pred             CCCcEEEEcCcHHHHHHHHHHHHcCCCCCcEEEEcCCCCCCCCCCCCcccccCCCCCCCCCCCCCccccCCCCCCCCHhH
Q 012165           50 ENREFVIVGGGNAAGYAARTFVEHGMADGRLCIVSKEAYAPYERPALTKGYLFPLDKKPARLPGFHTCVGSGGERQTPEW  129 (469)
Q Consensus        50 ~~~~vvIIGgG~AGl~aA~~L~~~g~~~~~V~vie~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  129 (469)
                      ..++|+|||||..|+-+|..|.+.|.   +|+++......     .++           ..             ....+.
T Consensus       280 ~gk~VvVIGgG~va~d~A~~l~r~Ga---~Vtlv~r~~~~-----~m~-----------a~-------------~~e~~~  327 (464)
T PRK12831        280 VGKKVAVVGGGNVAMDAARTALRLGA---EVHIVYRRSEE-----ELP-----------AR-------------VEEVHH  327 (464)
T ss_pred             CCCeEEEECCcHHHHHHHHHHHHcCC---EEEEEeecCcc-----cCC-----------CC-------------HHHHHH
Confidence            45799999999999999999999986   69999765421     000           00             001123


Q ss_pred             HHHCCcEEEeCCcEEEEeCC-CcE---EEeC------------------CC--eEEEeccEEeccCCCCC
Q 012165          130 YKEKGIEMIYQDPVTSIDIE-KQT---LITN------------------SG--KLLKYGSLIVATGCTAS  175 (469)
Q Consensus       130 ~~~~~i~~~~~~~v~~id~~-~~~---v~~~------------------~g--~~~~yd~lVlAtG~~~~  175 (469)
                      +.+.|++++.++.+..+..+ +..   |.+.                  +|  .++++|.||+|+|..|.
T Consensus       328 a~~eGV~i~~~~~~~~i~~~~~g~v~~v~~~~~~~~~~d~~Gr~~~~~~~g~~~~i~~D~Vi~AiG~~p~  397 (464)
T PRK12831        328 AKEEGVIFDLLTNPVEILGDENGWVKGMKCIKMELGEPDASGRRRPVEIEGSEFVLEVDTVIMSLGTSPN  397 (464)
T ss_pred             HHHcCCEEEecccceEEEecCCCeEEEEEEEEEEecCcCCCCCccceecCCceEEEECCEEEECCCCCCC
Confidence            56779998888777777532 211   1110                  12  25899999999998875

>PRK05714 2-octaprenyl-3-methyl-6-methoxy-1,4-benzoquinol hydroxylase; Provisional

Probab=97.29  E-value=0.0014  Score=65.91  Aligned_cols=49  Identities=18%  Similarity=0.349  Sum_probs=39.1

Q ss_pred             HHHHcCcEEEcCCeEEEEEeCCCCcEEEEEcCCCCEEeCCEEEEccCCccC
Q 012165          239 LYQQNGVKFVKGASIKNLEAGSDGRVAAVKLEDGSTIDADTIVIGIGAKPT  289 (469)
Q Consensus       239 ~l~~~gV~~~~~~~v~~i~~~~~~~v~~v~~~~g~~i~~D~vi~a~G~~p~  289 (469)
                      .+++.|++++.++++.+++.++++ + .|.+++|+++.+|+||.|.|....
T Consensus       121 ~~~~~gv~v~~~~~v~~i~~~~~~-v-~v~~~~g~~~~a~~vVgAdG~~S~  169 (405)
T PRK05714        121 RLHDSDIGLLANARLEQMRRSGDD-W-LLTLADGRQLRAPLVVAADGANSA  169 (405)
T ss_pred             HHhcCCCEEEcCCEEEEEEEcCCe-E-EEEECCCCEEEeCEEEEecCCCch
Confidence            345568999999999999865443 3 477889989999999999998764

>PRK06753 hypothetical protein; Provisional

Probab=97.29  E-value=0.0015  Score=64.92  Aligned_cols=79  Identities=16%  Similarity=0.288  Sum_probs=61.6

Q ss_pred             eEEEEcCChHHHHHHHHHHhCCCeEe------------------------------------------------------
Q 012165          209 KVVVVGGGYIGMEVAAAAVGWKLDTT------------------------------------------------------  234 (469)
Q Consensus       209 ~vvVvG~G~~g~e~A~~l~~~g~~v~------------------------------------------------------  234 (469)
                      +|+|||||+.|+-+|..|++.|.+++                                                      
T Consensus         2 ~V~IvGgG~aGl~~A~~L~~~g~~v~v~E~~~~~~~~g~gi~l~~~~~~~L~~~gl~~~~~~~~~~~~~~~~~~~~g~~~   81 (373)
T PRK06753          2 KIAIIGAGIGGLTAAALLQEQGHEVKVFEKNESVKEVGAGIGIGDNVIKKLGNHDLAKGIKNAGQILSTMNLLDDKGTLL   81 (373)
T ss_pred             EEEEECCCHHHHHHHHHHHhCCCcEEEEecCCcccccccceeeChHHHHHHHhcChHHHHHhcCCcccceeEEcCCCCEE
Confidence            69999999999999999999998886                                                      


Q ss_pred             -----------------eeHHHHHH--cCcEEEcCCeEEEEEeCCCCcEEEEEcCCCCEEeCCEEEEccCCccC
Q 012165          235 -----------------RYEQLYQQ--NGVKFVKGASIKNLEAGSDGRVAAVKLEDGSTIDADTIVIGIGAKPT  289 (469)
Q Consensus       235 -----------------~~~~~l~~--~gV~~~~~~~v~~i~~~~~~~v~~v~~~~g~~i~~D~vi~a~G~~p~  289 (469)
                                       .+.+.|.+  .+.++++++++++++.+ ++.+ .+.+++|+++.+|+||.|-|.+..
T Consensus        82 ~~~~~~~~~~~~~i~R~~l~~~L~~~~~~~~i~~~~~v~~i~~~-~~~v-~v~~~~g~~~~~~~vigadG~~S~  153 (373)
T PRK06753         82 NKVKLKSNTLNVTLHRQTLIDIIKSYVKEDAIFTGKEVTKIENE-TDKV-TIHFADGESEAFDLCIGADGIHSK  153 (373)
T ss_pred             eecccccCCccccccHHHHHHHHHHhCCCceEEECCEEEEEEec-CCcE-EEEECCCCEEecCEEEECCCcchH
Confidence                             11222222  24568889999999854 3444 578889999999999999997754

>PLN02576 protoporphyrinogen oxidase

Probab=97.29  E-value=0.00034  Score=72.46  Aligned_cols=39  Identities=15%  Similarity=0.296  Sum_probs=34.6

Q ss_pred             CCCCcEEEEcCcHHHHHHHHHHHHc-CCCCCcEEEEcCCCCCC
Q 012165           49 NENREFVIVGGGNAAGYAARTFVEH-GMADGRLCIVSKEAYAP   90 (469)
Q Consensus        49 ~~~~~vvIIGgG~AGl~aA~~L~~~-g~~~~~V~vie~~~~~~   90 (469)
                      ..++||+|||||++||+||.+|.+. |+   +|+|+|+++..+
T Consensus        10 ~~~~~v~IIGaGisGL~aA~~L~~~~g~---~v~vlEa~~rvG   49 (496)
T PLN02576         10 ASSKDVAVVGAGVSGLAAAYALASKHGV---NVLVTEARDRVG   49 (496)
T ss_pred             cCCCCEEEECcCHHHHHHHHHHHHhcCC---CEEEEecCCCCC
Confidence            3456899999999999999999998 77   799999998765

>TIGR00562 proto_IX_ox protoporphyrinogen oxidase

Probab=97.29  E-value=0.00029  Score=72.32  Aligned_cols=37  Identities=24%  Similarity=0.339  Sum_probs=33.4

Q ss_pred             CCcEEEEcCcHHHHHHHHHHHHc----CCCCCcEEEEcCCCCCC
Q 012165           51 NREFVIVGGGNAAGYAARTFVEH----GMADGRLCIVSKEAYAP   90 (469)
Q Consensus        51 ~~~vvIIGgG~AGl~aA~~L~~~----g~~~~~V~vie~~~~~~   90 (469)
                      ++||+|||||+|||+||..|.++    |+   +|+|+|+++..+
T Consensus         2 ~~~v~VIGaGiaGL~aA~~L~~~~~~~g~---~v~vlE~~~r~G   42 (462)
T TIGR00562         2 KKHVVIIGGGISGLCAAYYLEKEIPELPV---ELTLVEASDRVG   42 (462)
T ss_pred             CceEEEECCCHHHHHHHHHHHhcCCCCCC---cEEEEEcCCcCc
Confidence            46899999999999999999998    66   799999998765

This protein is a flavoprotein and has a beta-alpha-beta dinucleotide binding motif near the amino end.

>KOG0685 consensus Flavin-containing amine oxidase [Coenzyme transport and metabolism]

Probab=97.28  E-value=0.00034  Score=68.75  Aligned_cols=41  Identities=27%  Similarity=0.329  Sum_probs=35.4

Q ss_pred             CCCCcEEEEcCcHHHHHHHHHHHHcCCCCCcEEEEcCCCCCCC
Q 012165           49 NENREFVIVGGGNAAGYAARTFVEHGMADGRLCIVSKEAYAPY   91 (469)
Q Consensus        49 ~~~~~vvIIGgG~AGl~aA~~L~~~g~~~~~V~vie~~~~~~~   91 (469)
                      ....+|||||||+|||+||.+|.+.|+.  +++|+|.++..+.
T Consensus        19 ~~~~kIvIIGAG~AGLaAA~rLle~gf~--~~~IlEa~dRIGG   59 (498)
T KOG0685|consen   19 RGNAKIVIIGAGIAGLAAATRLLENGFI--DVLILEASDRIGG   59 (498)
T ss_pred             cCCceEEEECCchHHHHHHHHHHHhCCc--eEEEEEeccccCc
Confidence            3446899999999999999999998875  8999999987653

>TIGR01984 UbiH 2-polyprenyl-6-methoxyphenol 4-hydroxylase

Probab=97.28  E-value=0.0014  Score=65.40  Aligned_cols=44  Identities=23%  Similarity=0.354  Sum_probs=36.3

Q ss_pred             cCcEEEcCCeEEEEEeCCCCcEEEEEcCCCCEEeCCEEEEccCCcc
Q 012165          243 NGVKFVKGASIKNLEAGSDGRVAAVKLEDGSTIDADTIVIGIGAKP  288 (469)
Q Consensus       243 ~gV~~~~~~~v~~i~~~~~~~v~~v~~~~g~~i~~D~vi~a~G~~p  288 (469)
                      .|++++.++++++++.++++ + .+.+++|+++.+|+||.|.|...
T Consensus       119 ~gv~~~~~~~v~~i~~~~~~-~-~v~~~~g~~~~ad~vV~AdG~~S  162 (382)
T TIGR01984       119 TNIQLYCPARYKEIIRNQDY-V-RVTLDNGQQLRAKLLIAADGANS  162 (382)
T ss_pred             CCcEEEcCCeEEEEEEcCCe-E-EEEECCCCEEEeeEEEEecCCCh
Confidence            48999999999999865443 3 47778888999999999999765

This model represents the FAD-dependent monoxygenase responsible for the second hydroxylation step in the aerobic ubiquinone bioynthetic pathway. The scope of this model is limited to the proteobacteria. This family is closely related to the UbiF hydroxylase which catalyzes the final hydroxylation step. The enzyme has also been named VisB due to a mutant VISible light sensitive phenotype.

>PF01494 FAD_binding_3: FAD binding domain; InterPro: IPR002938 Monooxygenases incorporate one hydroxyl group into substrates and are found in many metabolic pathways

Probab=97.27  E-value=0.0012  Score=64.79  Aligned_cols=81  Identities=31%  Similarity=0.434  Sum_probs=60.1

Q ss_pred             eEEEEcCChHHHHHHHHHHhCCCeEe------------------------------------------------------
Q 012165          209 KVVVVGGGYIGMEVAAAAVGWKLDTT------------------------------------------------------  234 (469)
Q Consensus       209 ~vvVvG~G~~g~e~A~~l~~~g~~v~------------------------------------------------------  234 (469)
                      +|+|||+|+.|+-+|..|++.|.+|.                                                      
T Consensus         3 dV~IvGaG~aGl~~A~~L~~~G~~v~i~E~~~~~~~~~~~~~l~~~~~~~l~~lgl~~~~~~~~~~~~~~~~~~~~~~~~   82 (356)
T PF01494_consen    3 DVAIVGAGPAGLAAALALARAGIDVTIIERRPDPRPKGRGIGLSPNSLRILQRLGLLDEILARGSPHEVMRIFFYDGISD   82 (356)
T ss_dssp             EEEEE--SHHHHHHHHHHHHTTCEEEEEESSSSCCCSSSSEEEEHHHHHHHHHTTEHHHHHHHSEEECEEEEEEEEETTT
T ss_pred             eEEEECCCHHHHHHHHHHHhcccccccchhcccccccccccccccccccccccccchhhhhhhcccccceeeEeecccCC
Confidence            68999999999999999999999987                                                      


Q ss_pred             ---------------------------------eeHHHHHHcCcEEEcCCeEEEEEeCCCCcEEEEEcC-CC--CEEeCC
Q 012165          235 ---------------------------------RYEQLYQQNGVKFVKGASIKNLEAGSDGRVAAVKLE-DG--STIDAD  278 (469)
Q Consensus       235 ---------------------------------~~~~~l~~~gV~~~~~~~v~~i~~~~~~~v~~v~~~-~g--~~i~~D  278 (469)
                                                       .+.+.+++.|++++.++++..++.++++....+... +|  +++++|
T Consensus        83 ~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~l~~~L~~~~~~~gv~i~~~~~v~~~~~d~~~~~~~~~~~~~g~~~~i~ad  162 (356)
T PF01494_consen   83 SRIWVENPQIREDMEIDTKGPYGHVIDRPELDRALREEAEERGVDIRFGTRVVSIEQDDDGVTVVVRDGEDGEEETIEAD  162 (356)
T ss_dssp             SEEEEEEEEEEEECHSTSGSSCEEEEEHHHHHHHHHHHHHHHTEEEEESEEEEEEEEETTEEEEEEEETCTCEEEEEEES
T ss_pred             ccceeeecccceeeeccccCCcchhhhHHHHHHhhhhhhhhhhhhheeeeecccccccccccccccccccCCceeEEEEe
Confidence                                             334555678999999999999986655432223332 34  368999


Q ss_pred             EEEEccCCccC
Q 012165          279 TIVIGIGAKPT  289 (469)
Q Consensus       279 ~vi~a~G~~p~  289 (469)
                      +||-|-|....
T Consensus       163 lvVgADG~~S~  173 (356)
T PF01494_consen  163 LVVGADGAHSK  173 (356)
T ss_dssp             EEEE-SGTT-H
T ss_pred             eeecccCcccc
Confidence            99999998764

In this reaction, two atoms of dioxygen are reduced to one hydroxyl group and one H2O molecule by the concomitant oxidation of NAD(P)H []. P-hydroxybenzoate hydroxylase from Pseudomonas fluorescens contains this sequence motif (present in in flavoprotein hydroxylases) with a putative dual function in FAD and NADPH binding [].; PDB: 2Y6R_B 2XYO_C 2Y6Q_C 3P9U_D 2XDO_C 1FOH_D 1PN0_A 3IHG_C 2QA2_A 2VOU_C ....

>TIGR00031 UDP-GALP_mutase UDP-galactopyranose mutase

Probab=97.27  E-value=0.00035  Score=68.86  Aligned_cols=37  Identities=22%  Similarity=0.288  Sum_probs=32.7

Q ss_pred             CCcEEEEcCcHHHHHHHHHHHHcCCCCCcEEEEcCCCCCC
Q 012165           51 NREFVIVGGGNAAGYAARTFVEHGMADGRLCIVSKEAYAP   90 (469)
Q Consensus        51 ~~~vvIIGgG~AGl~aA~~L~~~g~~~~~V~vie~~~~~~   90 (469)
                      ++||+|||||+||+++|..|++.|.   +|+|+|+.+..+
T Consensus         1 ~~DvvIIGaG~aGlsaA~~La~~G~---~V~viEk~~~iG   37 (377)
T TIGR00031         1 MFDYIIVGAGLSGIVLANILAQLNK---RVLVVEKRNHIG   37 (377)
T ss_pred             CCcEEEECCCHHHHHHHHHHHhCCC---eEEEEecCCCCC
Confidence            3699999999999999999998876   799999987654

The gene is known as glf, ceoA, and rfbD. It is known experimentally in E. coli, Mycobacterium tuberculosis, and Klebsiella pneumoniae.

>PRK13369 glycerol-3-phosphate dehydrogenase; Provisional

Probab=97.26  E-value=0.00036  Score=72.27  Aligned_cols=38  Identities=21%  Similarity=0.448  Sum_probs=34.3

Q ss_pred             CCCCCcEEEEcCcHHHHHHHHHHHHcCCCCCcEEEEcCCCC
Q 012165           48 ANENREFVIVGGGNAAGYAARTFVEHGMADGRLCIVSKEAY   88 (469)
Q Consensus        48 ~~~~~~vvIIGgG~AGl~aA~~L~~~g~~~~~V~vie~~~~   88 (469)
                      ++.++||+|||||+.|+++|+.|+++|.   +|+|+|+.+.
T Consensus         3 ~~~~~DVvIIGGGi~G~~~A~~la~rG~---~V~LlEk~d~   40 (502)
T PRK13369          3 EPETYDLFVIGGGINGAGIARDAAGRGL---KVLLCEKDDL   40 (502)
T ss_pred             CCcccCEEEECCCHHHHHHHHHHHhCCC---cEEEEECCCC
Confidence            4556899999999999999999999997   7999999864

>KOG4254 consensus Phytoene desaturase [Coenzyme transport and metabolism]

Probab=97.26  E-value=0.00045  Score=67.24  Aligned_cols=50  Identities=16%  Similarity=0.355  Sum_probs=42.6

Q ss_pred             eeHHHHHHcCcEEEcCCeEEEEEeCCCCcEEEEEcCCCCEEeCCEEEEccC
Q 012165          235 RYEQLYQQNGVKFVKGASIKNLEAGSDGRVAAVKLEDGSTIDADTIVIGIG  285 (469)
Q Consensus       235 ~~~~~l~~~gV~~~~~~~v~~i~~~~~~~v~~v~~~~g~~i~~D~vi~a~G  285 (469)
                      .+.+-+++.|-++.+...|++|..+ +|++.+|.++||+++....|+.-++
T Consensus       269 aia~~~~~~GaeI~tka~Vq~Illd-~gka~GV~L~dG~ev~sk~VvSNAt  318 (561)
T KOG4254|consen  269 AIAEGAKRAGAEIFTKATVQSILLD-SGKAVGVRLADGTEVRSKIVVSNAT  318 (561)
T ss_pred             HHHHHHHhccceeeehhhhhheecc-CCeEEEEEecCCcEEEeeeeecCCc
Confidence            5667788999999999999999865 5888999999999999977776544

>PRK12416 protoporphyrinogen oxidase; Provisional

Probab=97.24  E-value=0.00036  Score=71.56  Aligned_cols=41  Identities=24%  Similarity=0.250  Sum_probs=33.7

Q ss_pred             CCcEEEEcCcHHHHHHHHHHHHcCC---CCCcEEEEcCCCCCCC
Q 012165           51 NREFVIVGGGNAAGYAARTFVEHGM---ADGRLCIVSKEAYAPY   91 (469)
Q Consensus        51 ~~~vvIIGgG~AGl~aA~~L~~~g~---~~~~V~vie~~~~~~~   91 (469)
                      |++|+|||||+|||+||..|.+.+.   ...+|+|+|+++..+.
T Consensus         1 m~~v~VIGaGisGL~aA~~L~~~~~~~~~~~~V~vlEa~~r~GG   44 (463)
T PRK12416          1 MKTVVVIGGGITGLSTMFYLEKLKKDYNIDLNLILVEKEEYLGG   44 (463)
T ss_pred             CCeEEEECCCHHHHHHHHHHHhhhhccCCCccEEEEecCCCccc
Confidence            4689999999999999999998742   1248999999987653

>COG0644 FixC Dehydrogenases (flavoproteins) [Energy production and conversion]

Probab=97.24  E-value=0.002  Score=64.69  Aligned_cols=88  Identities=22%  Similarity=0.330  Sum_probs=69.6

Q ss_pred             eEEEEcCChHHHHHHHHHHhCCCeEe------------------------------------------------------
Q 012165          209 KVVVVGGGYIGMEVAAAAVGWKLDTT------------------------------------------------------  234 (469)
Q Consensus       209 ~vvVvG~G~~g~e~A~~l~~~g~~v~------------------------------------------------------  234 (469)
                      .|+|||+|+.|.-+|..|++.|.+|.                                                      
T Consensus         5 DVvIVGaGPAGs~aA~~la~~G~~VlvlEk~~~~G~k~~~~~~~~~~~l~~l~~~~~~~i~~~v~~~~~~~~~~~~~~~~   84 (396)
T COG0644           5 DVVIVGAGPAGSSAARRLAKAGLDVLVLEKGSEPGAKPCCGGGLSPRALEELIPDFDEEIERKVTGARIYFPGEKVAIEV   84 (396)
T ss_pred             eEEEECCchHHHHHHHHHHHcCCeEEEEecCCCCCCCccccceechhhHHHhCCCcchhhheeeeeeEEEecCCceEEec
Confidence            69999999999999999999998875                                                      


Q ss_pred             ---------------eeHHHHHHcCcEEEcCCeEEEEEeCCCCcEEEEEcCCCCEEeCCEEEEccCCccCCchhhhcCCc
Q 012165          235 ---------------RYEQLYQQNGVKFVKGASIKNLEAGSDGRVAAVKLEDGSTIDADTIVIGIGAKPTVSPFERVGLN  299 (469)
Q Consensus       235 ---------------~~~~~l~~~gV~~~~~~~v~~i~~~~~~~v~~v~~~~g~~i~~D~vi~a~G~~p~~~~~~~~gl~  299 (469)
                                     ++.+..++.|++++.++.+..+..++++.+..+ ..++.++.++.||.|.|....  +.+.+++.
T Consensus        85 ~~~~~y~v~R~~fd~~La~~A~~aGae~~~~~~~~~~~~~~~~~~~~~-~~~~~e~~a~~vI~AdG~~s~--l~~~lg~~  161 (396)
T COG0644          85 PVGEGYIVDRAKFDKWLAERAEEAGAELYPGTRVTGVIREDDGVVVGV-RAGDDEVRAKVVIDADGVNSA--LARKLGLK  161 (396)
T ss_pred             CCCceEEEEhHHhhHHHHHHHHHcCCEEEeceEEEEEEEeCCcEEEEE-EcCCEEEEcCEEEECCCcchH--HHHHhCCC
Confidence                           345667789999999999999987666655433 344478999999999998763  44444444

>PRK12266 glpD glycerol-3-phosphate dehydrogenase; Reviewed

Probab=97.24  E-value=0.00038  Score=72.06  Aligned_cols=37  Identities=19%  Similarity=0.423  Sum_probs=33.5

Q ss_pred             CCCCcEEEEcCcHHHHHHHHHHHHcCCCCCcEEEEcCCCC
Q 012165           49 NENREFVIVGGGNAAGYAARTFVEHGMADGRLCIVSKEAY   88 (469)
Q Consensus        49 ~~~~~vvIIGgG~AGl~aA~~L~~~g~~~~~V~vie~~~~   88 (469)
                      +..+||+|||||..|+++|+.|+++|.   +|+|||+++.
T Consensus         4 ~~~~DVvIIGGGi~G~~~A~~la~rGl---~V~LvEk~d~   40 (508)
T PRK12266          4 METYDLLVIGGGINGAGIARDAAGRGL---SVLLCEQDDL   40 (508)
T ss_pred             CCcCCEEEECcCHHHHHHHHHHHHCCC---eEEEEecCCC
Confidence            456899999999999999999999998   7999999754

>PRK08274 tricarballylate dehydrogenase; Validated

Probab=97.23  E-value=0.00037  Score=71.60  Aligned_cols=37  Identities=27%  Similarity=0.367  Sum_probs=33.1

Q ss_pred             CCCCcEEEEcCcHHHHHHHHHHHHcCCCCCcEEEEcCCCC
Q 012165           49 NENREFVIVGGGNAAGYAARTFVEHGMADGRLCIVSKEAY   88 (469)
Q Consensus        49 ~~~~~vvIIGgG~AGl~aA~~L~~~g~~~~~V~vie~~~~   88 (469)
                      +..+||||||+|+||++||.++++.|.   +|+|||+.+.
T Consensus         2 ~~~~DVvVVG~G~aGl~AA~~aa~~G~---~V~vlEk~~~   38 (466)
T PRK08274          2 ASMVDVLVIGGGNAALCAALAAREAGA---SVLLLEAAPR   38 (466)
T ss_pred             CccCCEEEECCCHHHHHHHHHHHHCCC---eEEEEeCCCC
Confidence            345899999999999999999999987   7999999863

>PRK08132 FAD-dependent oxidoreductase; Provisional

Probab=97.22  E-value=0.0021  Score=67.45  Aligned_cols=83  Identities=25%  Similarity=0.345  Sum_probs=62.3

Q ss_pred             CCeEEEEcCChHHHHHHHHHHhCCCeEe----------------------------------------------------
Q 012165          207 AKKVVVVGGGYIGMEVAAAAVGWKLDTT----------------------------------------------------  234 (469)
Q Consensus       207 ~~~vvVvG~G~~g~e~A~~l~~~g~~v~----------------------------------------------------  234 (469)
                      ..+|+|||+|+.|+-+|..|++.|.++.                                                    
T Consensus        23 ~~dVlIVGaGpaGl~lA~~L~~~G~~v~viE~~~~~~~~~ra~~l~~~~~~~l~~lGl~~~l~~~~~~~~~~~~~~~~~~  102 (547)
T PRK08132         23 RHPVVVVGAGPVGLALAIDLAQQGVPVVLLDDDDTLSTGSRAICFAKRSLEIFDRLGCGERMVDKGVSWNVGKVFLRDEE  102 (547)
T ss_pred             cCCEEEECCCHHHHHHHHHHHhCCCcEEEEeCCCCCCCCCeEEEEcHHHHHHHHHcCCcHHHHhhCceeeceeEEeCCCe
Confidence            3579999999999999999999998876                                                    


Q ss_pred             ---------------------------eeHHHHHH-cCcEEEcCCeEEEEEeCCCCcEEEEEcCCCC-EEeCCEEEEccC
Q 012165          235 ---------------------------RYEQLYQQ-NGVKFVKGASIKNLEAGSDGRVAAVKLEDGS-TIDADTIVIGIG  285 (469)
Q Consensus       235 ---------------------------~~~~~l~~-~gV~~~~~~~v~~i~~~~~~~v~~v~~~~g~-~i~~D~vi~a~G  285 (469)
                                                 .+.+.+++ .++++++++++++++.++++....+...+|+ ++.+|+||.|.|
T Consensus       103 ~~~~~~~~~~~~~~~~~~~~~q~~le~~L~~~~~~~~~v~v~~~~~v~~i~~~~~~v~v~~~~~~g~~~i~ad~vVgADG  182 (547)
T PRK08132        103 VYRFDLLPEPGHRRPAFINLQQYYVEGYLVERAQALPNIDLRWKNKVTGLEQHDDGVTLTVETPDGPYTLEADWVIACDG  182 (547)
T ss_pred             EEEecCCCCCCCCCCceEecCHHHHHHHHHHHHHhCCCcEEEeCCEEEEEEEcCCEEEEEEECCCCcEEEEeCEEEECCC
Confidence                                       01122233 4799999999999986544433234444564 699999999999


Q ss_pred             CccC
Q 012165          286 AKPT  289 (469)
Q Consensus       286 ~~p~  289 (469)
                      ....
T Consensus       183 ~~S~  186 (547)
T PRK08132        183 ARSP  186 (547)
T ss_pred             CCcH
Confidence            8875

>COG3349 Uncharacterized conserved protein [Function unknown]

Probab=97.22  E-value=0.00037  Score=69.61  Aligned_cols=37  Identities=19%  Similarity=0.158  Sum_probs=33.9

Q ss_pred             CcEEEEcCcHHHHHHHHHHHHcCCCCCcEEEEcCCCCCCC
Q 012165           52 REFVIVGGGNAAGYAARTFVEHGMADGRLCIVSKEAYAPY   91 (469)
Q Consensus        52 ~~vvIIGgG~AGl~aA~~L~~~g~~~~~V~vie~~~~~~~   91 (469)
                      ++|+|+|||.|||+||.+|+++|+   +|||.|..+..+.
T Consensus         1 ~rVai~GaG~AgL~~a~~La~~g~---~vt~~ea~~~~GG   37 (485)
T COG3349           1 MRVAIAGAGLAGLAAAYELADAGY---DVTLYEARDRLGG   37 (485)
T ss_pred             CeEEEEcccHHHHHHHHHHHhCCC---ceEEEeccCccCc
Confidence            479999999999999999999998   8999999987754

>COG0665 DadA Glycine/D-amino acid oxidases (deaminating) [Amino acid transport and metabolism]

Probab=97.22  E-value=0.00038  Score=69.50  Aligned_cols=38  Identities=24%  Similarity=0.344  Sum_probs=34.2

Q ss_pred             CCCCcEEEEcCcHHHHHHHHHHHHcCCCCCcEEEEcCCCCC
Q 012165           49 NENREFVIVGGGNAAGYAARTFVEHGMADGRLCIVSKEAYA   89 (469)
Q Consensus        49 ~~~~~vvIIGgG~AGl~aA~~L~~~g~~~~~V~vie~~~~~   89 (469)
                      ++++||+|||||++|+++|.+|.+.|.   +|+++|++...
T Consensus         2 ~~~~~vvVIGgGi~Gls~A~~La~~G~---~V~vie~~~~~   39 (387)
T COG0665           2 SMKMDVVIIGGGIVGLSAAYYLAERGA---DVTVLEAGEAG   39 (387)
T ss_pred             CCcceEEEECCcHHHHHHHHHHHHcCC---EEEEEecCccC
Confidence            456899999999999999999999997   89999988754

>COG2072 TrkA Predicted flavoprotein involved in K+ transport [Inorganic ion transport and metabolism]

Probab=97.21  E-value=0.0082  Score=60.96  Aligned_cols=118  Identities=22%  Similarity=0.315  Sum_probs=77.8

Q ss_pred             cCCeEEEEcCChHHHHHHHHHHhCCCe-Ee--------------------------------------------------
Q 012165          206 KAKKVVVVGGGYIGMEVAAAAVGWKLD-TT--------------------------------------------------  234 (469)
Q Consensus       206 ~~~~vvVvG~G~~g~e~A~~l~~~g~~-v~--------------------------------------------------  234 (469)
                      ...+|+|||+|++|+-+|..|.+.|.. ..                                                  
T Consensus         7 ~~~~v~IIGaG~sGlaaa~~L~~~g~~~~~i~Ek~~~~Gg~W~~~ry~~l~~~~p~~~~~~~~~p~~~~~~~~~~~~~~~   86 (443)
T COG2072           7 THTDVAIIGAGQSGLAAAYALKQAGVPDFVIFEKRDDVGGTWRYNRYPGLRLDSPKWLLGFPFLPFRWDEAFAPFAEIKD   86 (443)
T ss_pred             CcccEEEECCCHHHHHHHHHHHHcCCCcEEEEEccCCcCCcchhccCCceEECCchheeccCCCccCCcccCCCcccHHH
Confidence            346899999999999999999999988 43                                                  


Q ss_pred             eeHHHHHHcCcE--EEcCCeEEEEEeCCCCcEEEEEcCCCCE--EeCCEEEEccCCc--cCCchhhhcCCcccCCCEEeC
Q 012165          235 RYEQLYQQNGVK--FVKGASIKNLEAGSDGRVAAVKLEDGST--IDADTIVIGIGAK--PTVSPFERVGLNSSVGGIQVD  308 (469)
Q Consensus       235 ~~~~~l~~~gV~--~~~~~~v~~i~~~~~~~v~~v~~~~g~~--i~~D~vi~a~G~~--p~~~~~~~~gl~~~~g~i~Vd  308 (469)
                      .+...+++.++.  +..++.|+.+..++++..-.|++++|..  +.+|.||+|+|.-  |+.+-+.  |++.-.|.+.-.
T Consensus        87 y~~~~~~~y~~~~~i~~~~~v~~~~~~~~~~~w~V~~~~~~~~~~~a~~vV~ATG~~~~P~iP~~~--G~~~f~g~~~HS  164 (443)
T COG2072          87 YIKDYLEKYGLRFQIRFNTRVEVADWDEDTKRWTVTTSDGGTGELTADFVVVATGHLSEPYIPDFA--GLDEFKGRILHS  164 (443)
T ss_pred             HHHHHHHHcCceeEEEcccceEEEEecCCCCeEEEEEcCCCeeeEecCEEEEeecCCCCCCCCCCC--CccCCCceEEch
Confidence            345556665554  3445666667666666677788888865  5599999999983  3333222  333323333322


Q ss_pred             CC----CCCCCCceEEecccc
Q 012165          309 GQ----FRTRMPGIFAIGDVA  325 (469)
Q Consensus       309 ~~----~~t~~~~Vfa~GD~a  325 (469)
                      .+    ....-++|-++|--+
T Consensus       165 ~~~~~~~~~~GKrV~VIG~Ga  185 (443)
T COG2072         165 ADWPNPEDLRGKRVLVIGAGA  185 (443)
T ss_pred             hcCCCccccCCCeEEEECCCc
Confidence            21    223457888888443

>PLN02697 lycopene epsilon cyclase

Probab=97.20  E-value=0.0021  Score=66.42  Aligned_cols=79  Identities=25%  Similarity=0.415  Sum_probs=60.5

Q ss_pred             CeEEEEcCChHHHHHHHHHHhCCCeEe-----------------------------------------------------
Q 012165          208 KKVVVVGGGYIGMEVAAAAVGWKLDTT-----------------------------------------------------  234 (469)
Q Consensus       208 ~~vvVvG~G~~g~e~A~~l~~~g~~v~-----------------------------------------------------  234 (469)
                      -.|+|||+|+.|+.+|..+++.|.+|.                                                     
T Consensus       109 ~DVvIVGaGPAGLalA~~Lak~Gl~V~LIe~~~p~~~n~GvW~~~l~~lgl~~~i~~~w~~~~v~~~~~~~~~~~~~Yg~  188 (529)
T PLN02697        109 LDLVVIGCGPAGLALAAESAKLGLNVGLIGPDLPFTNNYGVWEDEFKDLGLEDCIEHVWRDTIVYLDDDKPIMIGRAYGR  188 (529)
T ss_pred             ccEEEECcCHHHHHHHHHHHhCCCcEEEecCcccCCCccccchhHHHhcCcHHHHHhhcCCcEEEecCCceeeccCcccE
Confidence            469999999999999999999888775                                                     


Q ss_pred             --------eeHHHHHHcCcEEEcCCeEEEEEeCCCCcEEEEEcCCCCEEeCCEEEEccCCcc
Q 012165          235 --------RYEQLYQQNGVKFVKGASIKNLEAGSDGRVAAVKLEDGSTIDADTIVIGIGAKP  288 (469)
Q Consensus       235 --------~~~~~l~~~gV~~~~~~~v~~i~~~~~~~v~~v~~~~g~~i~~D~vi~a~G~~p  288 (469)
                              .+.+.+.+.|+++ .+..|++++..+++ +..+.+.+|.++.++.||.|.|..+
T Consensus       189 V~R~~L~~~Ll~~a~~~GV~~-~~~~V~~I~~~~~~-~~vv~~~dG~~i~A~lVI~AdG~~S  248 (529)
T PLN02697        189 VSRTLLHEELLRRCVESGVSY-LSSKVDRITEASDG-LRLVACEDGRVIPCRLATVASGAAS  248 (529)
T ss_pred             EcHHHHHHHHHHHHHhcCCEE-EeeEEEEEEEcCCc-EEEEEEcCCcEEECCEEEECCCcCh
Confidence                    1223335568998 56688888754333 3334567888999999999999876

>TIGR01988 Ubi-OHases Ubiquinone biosynthesis hydroxylase, UbiH/UbiF/VisC/COQ6 family

Probab=97.20  E-value=0.002  Score=64.24  Aligned_cols=49  Identities=24%  Similarity=0.306  Sum_probs=38.4

Q ss_pred             HHHHcC-cEEEcCCeEEEEEeCCCCcEEEEEcCCCCEEeCCEEEEccCCccC
Q 012165          239 LYQQNG-VKFVKGASIKNLEAGSDGRVAAVKLEDGSTIDADTIVIGIGAKPT  289 (469)
Q Consensus       239 ~l~~~g-V~~~~~~~v~~i~~~~~~~v~~v~~~~g~~i~~D~vi~a~G~~p~  289 (469)
                      .+++.| ++++.++++++++.. ++.+ .+.+++|+++.+|+||.|.|....
T Consensus       115 ~~~~~~~~~v~~~~~v~~i~~~-~~~~-~v~~~~g~~~~~~~vi~adG~~S~  164 (385)
T TIGR01988       115 RLQEYPNVTLLCPARVVELPRH-SDHV-ELTLDDGQQLRARLLVGADGANSK  164 (385)
T ss_pred             HHHhCCCcEEecCCeEEEEEec-CCee-EEEECCCCEEEeeEEEEeCCCCCH
Confidence            344556 999999999999864 3344 477889989999999999998653

This model represents a family of FAD-dependent hydroxylases (monooxygenases) which are all believed to act in the aerobic ubiquinone biosynthesis pathway. A separate set of hydroxylases, as yet undiscovered, are believed to be active under anaerobic conditions. In E. coli three enzyme activities have been described, UbiB (which acts first at position 6, see TIGR01982), UbiH (which acts at position 4, ) and UbiF (which acts at position 5). UbiH and UbiF are similar to one another and form the basis of this subfamily. Interestingly, E. coli contains another hydroxylase gene, called visC, that is highly similar to UbiF, adjacent to UbiH and, when mutated, results in a phenotype similar to that of UbiH (which has also been named visB). Several other species appear to have three homologs in this family, although they assort themselves differently on phylogenetic trees (e.g. Xylella and Mesorhizobium) maki

>PRK08849 2-octaprenyl-3-methyl-6-methoxy-1,4-benzoquinol hydroxylase; Provisional

Probab=97.19  E-value=0.0017  Score=64.91  Aligned_cols=46  Identities=26%  Similarity=0.406  Sum_probs=37.5

Q ss_pred             cCcEEEcCCeEEEEEeCCCCcEEEEEcCCCCEEeCCEEEEccCCccCC
Q 012165          243 NGVKFVKGASIKNLEAGSDGRVAAVKLEDGSTIDADTIVIGIGAKPTV  290 (469)
Q Consensus       243 ~gV~~~~~~~v~~i~~~~~~~v~~v~~~~g~~i~~D~vi~a~G~~p~~  290 (469)
                      .|++++.++++++++.++++ + .+++++|+++.+|+||.|.|.....
T Consensus       124 ~~i~i~~~~~v~~~~~~~~~-~-~v~~~~g~~~~~~lvIgADG~~S~v  169 (384)
T PRK08849        124 PNLTLMCPEKLADLEFSAEG-N-RVTLESGAEIEAKWVIGADGANSQV  169 (384)
T ss_pred             CCeEEECCCceeEEEEcCCe-E-EEEECCCCEEEeeEEEEecCCCchh
Confidence            46888889999998765443 3 5788899999999999999998754

>TIGR03143 AhpF_homolog putative alkyl hydroperoxide reductase F subunit

Probab=97.19  E-value=0.0019  Score=67.62  Aligned_cols=80  Identities=29%  Similarity=0.454  Sum_probs=60.4

Q ss_pred             CeEEEEcCChHHHHHHHHHHhCCCeEe---------------------------------eeHHHHHHcCcEEEcCCeEE
Q 012165          208 KKVVVVGGGYIGMEVAAAAVGWKLDTT---------------------------------RYEQLYQQNGVKFVKGASIK  254 (469)
Q Consensus       208 ~~vvVvG~G~~g~e~A~~l~~~g~~v~---------------------------------~~~~~l~~~gV~~~~~~~v~  254 (469)
                      ..|+|||||+.|+.+|..+++.+.++.                                 .+.+.+++.|++++ +..+.
T Consensus         5 yDVvIIGgGpAGL~AA~~lar~g~~V~liE~~~~GG~~~~~~~i~~~pg~~~~~~~~l~~~l~~~~~~~gv~~~-~~~V~   83 (555)
T TIGR03143         5 YDLIIIGGGPAGLSAGIYAGRAKLDTLIIEKDDFGGQITITSEVVNYPGILNTTGPELMQEMRQQAQDFGVKFL-QAEVL   83 (555)
T ss_pred             CcEEEECCCHHHHHHHHHHHHCCCCEEEEecCCCCceEEeccccccCCCCcCCCHHHHHHHHHHHHHHcCCEEe-ccEEE
Confidence            479999999999999999999888776                                 12234556799986 56788


Q ss_pred             EEEeCCCCcEEEEEcCCCCEEeCCEEEEccCCccCCc
Q 012165          255 NLEAGSDGRVAAVKLEDGSTIDADTIVIGIGAKPTVS  291 (469)
Q Consensus       255 ~i~~~~~~~v~~v~~~~g~~i~~D~vi~a~G~~p~~~  291 (469)
                      .+...  +....+.+.++ .+.+|.+|+|+|.+|...
T Consensus        84 ~i~~~--~~~~~V~~~~g-~~~a~~lVlATGa~p~~~  117 (555)
T TIGR03143        84 DVDFD--GDIKTIKTARG-DYKTLAVLIATGASPRKL  117 (555)
T ss_pred             EEEec--CCEEEEEecCC-EEEEeEEEECCCCccCCC
Confidence            88753  23334666665 689999999999988643

This family of thioredoxin reductase homologs is found adjacent to alkylhydroperoxide reductase C subunit predominantly in cases where there is only one C subunit in the genome and that genome is lacking the F subunit partner (also a thioredcxin reductase homolog) that is usually found (TIGR03140).

>TIGR01377 soxA_mon sarcosine oxidase, monomeric form

Probab=97.18  E-value=0.00039  Score=69.29  Aligned_cols=58  Identities=22%  Similarity=0.400  Sum_probs=41.8

Q ss_pred             eHHHHHHcCcEEEcCCeEEEEEeCCCCcEEEEEcCCCCEEeCCEEEEccCCccCCchhhhcC
Q 012165          236 YEQLYQQNGVKFVKGASIKNLEAGSDGRVAAVKLEDGSTIDADTIVIGIGAKPTVSPFERVG  297 (469)
Q Consensus       236 ~~~~l~~~gV~~~~~~~v~~i~~~~~~~v~~v~~~~g~~i~~D~vi~a~G~~p~~~~~~~~g  297 (469)
                      +.+.+++.|++++.+++|.+++.+ ++.+ .|.++++ ++.+|.||+|+|.... .+++.++
T Consensus       151 l~~~~~~~g~~~~~~~~V~~i~~~-~~~~-~v~~~~~-~i~a~~vV~aaG~~~~-~l~~~~g  208 (380)
T TIGR01377       151 LQELAEAHGATVRDGTKVVEIEPT-ELLV-TVKTTKG-SYQANKLVVTAGAWTS-KLLSPLG  208 (380)
T ss_pred             HHHHHHHcCCEEECCCeEEEEEec-CCeE-EEEeCCC-EEEeCEEEEecCcchH-HHhhhcc
Confidence            345567789999999999999864 3333 4666666 7999999999997543 3444444

Sarcosine oxidase catalyzes the oxidative demethylation of sarcosine to glycine. The reaction converts tetrahydrofolate to 5,10-methylene-tetrahydrofolate. The enzyme is known in monomeric and heterotetrameric (alpha,beta,gamma,delta) forms

>TIGR00136 gidA glucose-inhibited division protein A

Probab=97.18  E-value=0.0022  Score=66.43  Aligned_cols=44  Identities=18%  Similarity=0.385  Sum_probs=35.0

Q ss_pred             CcEEEcCCeEEEEEeCCCCcEEEEEcCCCCEEeCCEEEEccCCcc
Q 012165          244 GVKFVKGASIKNLEAGSDGRVAAVKLEDGSTIDADTIVIGIGAKP  288 (469)
Q Consensus       244 gV~~~~~~~v~~i~~~~~~~v~~v~~~~g~~i~~D~vi~a~G~~p  288 (469)
                      |+.++.+ .+..+...+++.+.+|.+.+|..+.||.||+|+|.-.
T Consensus       111 gV~Ile~-~Vv~li~e~~g~V~GV~t~~G~~I~Ad~VILATGtfL  154 (617)
T TIGR00136       111 NLSLFQG-EVEDLILEDNDEIKGVVTQDGLKFRAKAVIITTGTFL  154 (617)
T ss_pred             CcEEEEe-EEEEEEEecCCcEEEEEECCCCEEECCEEEEccCccc
Confidence            7888755 5666654335677889999999999999999999874

GidA, the longer of two forms of GidA-related proteins, appears to be present in all complete eubacterial genomes so far, as well as Saccharomyces cerevisiae. A subset of these organisms have a closely related protein. GidA is absent in the Archaea. It appears to act with MnmE, in an alpha2/beta2 heterotetramer, in the 5-carboxymethylaminomethyl modification of uridine 34 in certain tRNAs. The shorter, related protein, previously called gid or gidA(S), is now called TrmFO (see model TIGR00137).

>PF14721 AIF_C: Apoptosis-inducing factor, mitochondrion-associated, C-term; PDB: 3GD4_A 1GV4_A 3GD3_A 1M6I_A

Probab=97.16  E-value=0.0014  Score=52.13  Aligned_cols=31  Identities=10%  Similarity=0.274  Sum_probs=23.3

Q ss_pred             EEEEEEeCCEEEEEEeecCChHHhHHHHHHHh
Q 012165          405 IATFWIDSGKLKGVLVESGSPEEFQLLPTLAR  436 (469)
Q Consensus       405 ~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~  436 (469)
                      -++||+++++++|+++ .+--..+...+++|.
T Consensus       101 GVVfYLrd~~VvGill-WNvf~~~~~AR~ii~  131 (133)
T PF14721_consen  101 GVVFYLRDDRVVGILL-WNVFNRMPIARKIIA  131 (133)
T ss_dssp             EEEEEEETTEEEEEEE-ES--S-HHHHHHHHH
T ss_pred             eEEEEEcCCeEEEEEE-eeccCccHHHHHHhh
Confidence            4789999999999998 566667777887774

>PTZ00367 squalene epoxidase; Provisional

Probab=97.16  E-value=0.0005  Score=71.64  Aligned_cols=36  Identities=22%  Similarity=0.467  Sum_probs=32.9

Q ss_pred             CCCCcEEEEcCcHHHHHHHHHHHHcCCCCCcEEEEcCCC
Q 012165           49 NENREFVIVGGGNAAGYAARTFVEHGMADGRLCIVSKEA   87 (469)
Q Consensus        49 ~~~~~vvIIGgG~AGl~aA~~L~~~g~~~~~V~vie~~~   87 (469)
                      +..+||+|||||++|+++|..|++.|+   +|+|+|+.+
T Consensus        31 ~~~~dViIVGaGiaGlalA~aLar~G~---~V~VlEr~~   66 (567)
T PTZ00367         31 NYDYDVIIVGGSIAGPVLAKALSKQGR---KVLMLERDL   66 (567)
T ss_pred             ccCccEEEECCCHHHHHHHHHHHhcCC---EEEEEcccc
Confidence            456899999999999999999999987   799999875

>PLN02927 antheraxanthin epoxidase/zeaxanthin epoxidase

Probab=97.16  E-value=0.00046  Score=72.66  Aligned_cols=36  Identities=17%  Similarity=0.309  Sum_probs=32.9

Q ss_pred             CCCCcEEEEcCcHHHHHHHHHHHHcCCCCCcEEEEcCCC
Q 012165           49 NENREFVIVGGGNAAGYAARTFVEHGMADGRLCIVSKEA   87 (469)
Q Consensus        49 ~~~~~vvIIGgG~AGl~aA~~L~~~g~~~~~V~vie~~~   87 (469)
                      .++.+|+|||||++|+++|..|+++|+   +|+|+|+.+
T Consensus        79 ~~~~~VlIVGgGIaGLalAlaL~r~Gi---~V~V~Er~~  114 (668)
T PLN02927         79 KKKSRVLVAGGGIGGLVFALAAKKKGF---DVLVFEKDL  114 (668)
T ss_pred             cCCCCEEEECCCHHHHHHHHHHHhcCC---eEEEEeccc
Confidence            456899999999999999999999998   799999875

>TIGR02733 desat_CrtD C-3',4' desaturase CrtD

Probab=97.15  E-value=0.00049  Score=71.16  Aligned_cols=52  Identities=19%  Similarity=0.396  Sum_probs=40.7

Q ss_pred             eeHHHHHHcCcEEEcCCeEEEEEeCCCCcEEEEEcCCC-----CEEeCCEEEEccCCc
Q 012165          235 RYEQLYQQNGVKFVKGASIKNLEAGSDGRVAAVKLEDG-----STIDADTIVIGIGAK  287 (469)
Q Consensus       235 ~~~~~l~~~gV~~~~~~~v~~i~~~~~~~v~~v~~~~g-----~~i~~D~vi~a~G~~  287 (469)
                      .+.+.+++.|+++++++.|++|..+ ++++..+.+.++     +++.+|.||+++...
T Consensus       237 aL~~~~~~~G~~i~~~~~V~~I~~~-~~~~~gv~~~~~~~~~~~~~~ad~VI~~~~~~  293 (492)
T TIGR02733       237 RLVEALKRDGGNLLTGQRVTAIHTK-GGRAGWVVVVDSRKQEDLNVKADDVVANLPPQ  293 (492)
T ss_pred             HHHHHHHhcCCEEeCCceEEEEEEe-CCeEEEEEEecCCCCceEEEECCEEEECCCHH
Confidence            5677788889999999999999864 444445666554     578999999998753

Members of this family are slr1293, a carotenoid biosynthesis protein which was shown to be the C-3',4' desaturase (CrtD) of myxoxanthophyll biosynthesis in Synechocystis sp. strain PCC 6803, and close homologs (presumed to be functionally equivalent) from other cyanobacteria, where myxoxanthophyll biosynthesis is either known or expected. This enzyme can act on neurosporene and so presumably catalyzes the first step that is committed to myxoxanthophyll.

>PLN02661 Putative thiazole synthesis

Probab=97.14  E-value=0.0058  Score=59.20  Aligned_cols=81  Identities=21%  Similarity=0.328  Sum_probs=59.7

Q ss_pred             CCeEEEEcCChHHHHHHHHHHhC-CCeEe---------------------------------------------------
Q 012165          207 AKKVVVVGGGYIGMEVAAAAVGW-KLDTT---------------------------------------------------  234 (469)
Q Consensus       207 ~~~vvVvG~G~~g~e~A~~l~~~-g~~v~---------------------------------------------------  234 (469)
                      .-+|+|||+|..|+-+|..|++. +.++.                                                   
T Consensus        92 ~~DVlIVGaG~AGl~AA~~La~~~g~kV~viEk~~~~GGG~~~gg~l~~~~vv~~~a~e~LeElGV~fd~~dgy~vv~ha  171 (357)
T PLN02661         92 DTDVVIVGAGSAGLSCAYELSKNPNVKVAIIEQSVSPGGGAWLGGQLFSAMVVRKPAHLFLDELGVPYDEQENYVVIKHA  171 (357)
T ss_pred             cCCEEEECCHHHHHHHHHHHHHcCCCeEEEEecCcccccceeeCcccccccccccHHHHHHHHcCCCcccCCCeeEecch
Confidence            45899999999999999999865 66665                                                   


Q ss_pred             ------eeHHHHHHcCcEEEcCCeEEEEEeCCCCcEEEEEc------CC--C------CEEeCCEEEEccCCcc
Q 012165          235 ------RYEQLYQQNGVKFVKGASIKNLEAGSDGRVAAVKL------ED--G------STIDADTIVIGIGAKP  288 (469)
Q Consensus       235 ------~~~~~l~~~gV~~~~~~~v~~i~~~~~~~v~~v~~------~~--g------~~i~~D~vi~a~G~~p  288 (469)
                            .+.+..++.||+++.++.+.++..+ ++++.++.+      .+  +      ..+.++.||+|||..+
T Consensus       172 ~e~~stLi~ka~~~~gVkI~~~t~V~DLI~~-~grVaGVVvnw~~v~~~~~~~s~~dp~~I~AkaVVlATGh~g  244 (357)
T PLN02661        172 ALFTSTIMSKLLARPNVKLFNAVAAEDLIVK-GDRVGGVVTNWALVAQNHDTQSCMDPNVMEAKVVVSSCGHDG  244 (357)
T ss_pred             HHHHHHHHHHHHhcCCCEEEeCeEeeeEEec-CCEEEEEEeecchhhhccCCCCccceeEEECCEEEEcCCCCC
Confidence                  0112333478999999888888754 567777763      11  1      2689999999999665

>PRK08013 oxidoreductase; Provisional

Probab=97.13  E-value=0.0024  Score=64.14  Aligned_cols=45  Identities=22%  Similarity=0.348  Sum_probs=36.7

Q ss_pred             cCcEEEcCCeEEEEEeCCCCcEEEEEcCCCCEEeCCEEEEccCCccC
Q 012165          243 NGVKFVKGASIKNLEAGSDGRVAAVKLEDGSTIDADTIVIGIGAKPT  289 (469)
Q Consensus       243 ~gV~~~~~~~v~~i~~~~~~~v~~v~~~~g~~i~~D~vi~a~G~~p~  289 (469)
                      .||+++.++++++++.++++ + .+.+.+|+++.+|+||-|-|....
T Consensus       125 ~~v~i~~~~~v~~i~~~~~~-v-~v~~~~g~~i~a~lvVgADG~~S~  169 (400)
T PRK08013        125 SDITLLAPAELQQVAWGENE-A-FLTLKDGSMLTARLVVGADGANSW  169 (400)
T ss_pred             CCcEEEcCCeeEEEEecCCe-E-EEEEcCCCEEEeeEEEEeCCCCcH
Confidence            37999999999999765443 3 467889999999999999998764

>PRK08020 ubiF 2-octaprenyl-3-methyl-6-methoxy-1,4-benzoquinol hydroxylase; Reviewed

Probab=97.12  E-value=0.0028  Score=63.43  Aligned_cols=44  Identities=30%  Similarity=0.417  Sum_probs=35.9

Q ss_pred             CcEEEcCCeEEEEEeCCCCcEEEEEcCCCCEEeCCEEEEccCCccC
Q 012165          244 GVKFVKGASIKNLEAGSDGRVAAVKLEDGSTIDADTIVIGIGAKPT  289 (469)
Q Consensus       244 gV~~~~~~~v~~i~~~~~~~v~~v~~~~g~~i~~D~vi~a~G~~p~  289 (469)
                      |++++.++++++++..+++ + .|.+++|+++.+|+||.|.|....
T Consensus       127 gv~i~~~~~v~~i~~~~~~-~-~v~~~~g~~~~a~~vI~AdG~~S~  170 (391)
T PRK08020        127 NVTLRCPASLQALQRDDDG-W-ELTLADGEEIQAKLVIGADGANSQ  170 (391)
T ss_pred             CcEEEcCCeeEEEEEcCCe-E-EEEECCCCEEEeCEEEEeCCCCch
Confidence            8999999999998754333 2 577788889999999999998774

>PRK07364 2-octaprenyl-6-methoxyphenyl hydroxylase; Validated

Probab=97.11  E-value=0.0026  Score=64.28  Aligned_cols=82  Identities=27%  Similarity=0.444  Sum_probs=61.1

Q ss_pred             CCeEEEEcCChHHHHHHHHHHhCCCeEe----------------------------------------------------
Q 012165          207 AKKVVVVGGGYIGMEVAAAAVGWKLDTT----------------------------------------------------  234 (469)
Q Consensus       207 ~~~vvVvG~G~~g~e~A~~l~~~g~~v~----------------------------------------------------  234 (469)
                      ..+|+|||+|+.|+-+|..|++.|.+|+                                                    
T Consensus        18 ~~dV~IvGaG~aGl~~A~~L~~~G~~v~v~E~~~~~~~~~~g~~~~l~~~~~~~L~~lGl~~~l~~~~~~~~~~~~~~~~   97 (415)
T PRK07364         18 TYDVAIVGGGIVGLTLAAALKDSGLRIALIEAQPAEAAAAKGQAYALSLLSARIFEGIGVWEKILPQIGKFRQIRLSDAD   97 (415)
T ss_pred             ccCEEEECcCHHHHHHHHHHhcCCCEEEEEecCCccccCCCCcEEEechHHHHHHHHCChhhhhHhhcCCccEEEEEeCC
Confidence            3579999999999999999999988876                                                    


Q ss_pred             ----------------------------eeHHHHHH-cCcEEEcCCeEEEEEeCCCCcEEEEEcCC-C--CEEeCCEEEE
Q 012165          235 ----------------------------RYEQLYQQ-NGVKFVKGASIKNLEAGSDGRVAAVKLED-G--STIDADTIVI  282 (469)
Q Consensus       235 ----------------------------~~~~~l~~-~gV~~~~~~~v~~i~~~~~~~v~~v~~~~-g--~~i~~D~vi~  282 (469)
                                                  .+.+.+.+ .||++++++++++++.++++ + .|.+.+ +  .++.+|+||.
T Consensus        98 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~~~~~~v~i~~~~~v~~v~~~~~~-~-~v~~~~~~~~~~i~adlvIg  175 (415)
T PRK07364         98 YPGVVKFQPTDLGTEALGYVGEHQVLLEALQEFLQSCPNITWLCPAEVVSVEYQQDA-A-TVTLEIEGKQQTLQSKLVVA  175 (415)
T ss_pred             CCceeeeccccCCCCccEEEEecHHHHHHHHHHHhcCCCcEEEcCCeeEEEEecCCe-e-EEEEccCCcceEEeeeEEEE
Confidence                                        11122223 37999999999999865443 3 355553 2  3699999999


Q ss_pred             ccCCccCC
Q 012165          283 GIGAKPTV  290 (469)
Q Consensus       283 a~G~~p~~  290 (469)
                      |.|.....
T Consensus       176 ADG~~S~v  183 (415)
T PRK07364        176 ADGARSPI  183 (415)
T ss_pred             eCCCCchh
Confidence            99987653

>PRK08850 2-octaprenyl-6-methoxyphenol hydroxylase; Validated

Probab=97.11  E-value=0.0023  Score=64.38  Aligned_cols=45  Identities=20%  Similarity=0.330  Sum_probs=36.3

Q ss_pred             cCcEEEcCCeEEEEEeCCCCcEEEEEcCCCCEEeCCEEEEccCCccC
Q 012165          243 NGVKFVKGASIKNLEAGSDGRVAAVKLEDGSTIDADTIVIGIGAKPT  289 (469)
Q Consensus       243 ~gV~~~~~~~v~~i~~~~~~~v~~v~~~~g~~i~~D~vi~a~G~~p~  289 (469)
                      .||+++.++++++++.++++ + .|.+++|+++.+|+||.|-|....
T Consensus       125 ~~v~v~~~~~v~~i~~~~~~-~-~v~~~~g~~~~a~lvIgADG~~S~  169 (405)
T PRK08850        125 DNVTLLMPARCQSIAVGESE-A-WLTLDNGQALTAKLVVGADGANSW  169 (405)
T ss_pred             CCeEEEcCCeeEEEEeeCCe-E-EEEECCCCEEEeCEEEEeCCCCCh
Confidence            47999999999999754333 3 578889999999999999997654

>PRK07608 ubiquinone biosynthesis hydroxylase family protein; Provisional

Probab=97.08  E-value=0.003  Score=63.15  Aligned_cols=48  Identities=25%  Similarity=0.335  Sum_probs=36.4

Q ss_pred             HHHHcC-cEEEcCCeEEEEEeCCCCcEEEEEcCCCCEEeCCEEEEccCCccC
Q 012165          239 LYQQNG-VKFVKGASIKNLEAGSDGRVAAVKLEDGSTIDADTIVIGIGAKPT  289 (469)
Q Consensus       239 ~l~~~g-V~~~~~~~v~~i~~~~~~~v~~v~~~~g~~i~~D~vi~a~G~~p~  289 (469)
                      .+++.| ++++ +..+++++..++ .+ .+++++|+++.+|.||.|.|....
T Consensus       120 ~~~~~~~v~~~-~~~v~~i~~~~~-~~-~v~~~~g~~~~a~~vI~adG~~S~  168 (388)
T PRK07608        120 ALRFQPNLTWF-PARAQGLEVDPD-AA-TLTLADGQVLRADLVVGADGAHSW  168 (388)
T ss_pred             HHHhCCCcEEE-cceeEEEEecCC-eE-EEEECCCCEEEeeEEEEeCCCCch
Confidence            345556 8888 888888875433 33 477888888999999999998754

>PF00890 FAD_binding_2: FAD binding domain of the Pfam family

Probab=97.04  E-value=0.00063  Score=68.79  Aligned_cols=53  Identities=26%  Similarity=0.433  Sum_probs=39.0

Q ss_pred             eHHHHHHcCcEEEcCCeEEEEEeCCCCcEEEEEcC---CCC--EEeCCEEEEccCCccC
Q 012165          236 YEQLYQQNGVKFVKGASIKNLEAGSDGRVAAVKLE---DGS--TIDADTIVIGIGAKPT  289 (469)
Q Consensus       236 ~~~~l~~~gV~~~~~~~v~~i~~~~~~~v~~v~~~---~g~--~i~~D~vi~a~G~~p~  289 (469)
                      +.+.+++.|+++++++.++++..+ +++|.++...   +|+  .+.++.||+|+|--..
T Consensus       147 l~~~~~~~gv~i~~~~~~~~Li~e-~g~V~Gv~~~~~~~g~~~~i~A~aVIlAtGG~~~  204 (417)
T PF00890_consen  147 LAKAAEEAGVDIRFNTRVTDLITE-DGRVTGVVAENPADGEFVRIKAKAVILATGGFGG  204 (417)
T ss_dssp             HHHHHHHTTEEEEESEEEEEEEEE-TTEEEEEEEEETTTCEEEEEEESEEEE----BGG
T ss_pred             HHHHHhhcCeeeeccceeeeEEEe-CCceeEEEEEECCCCeEEEEeeeEEEeccCcccc
Confidence            446688899999999999999864 6788888776   454  5789999999987654

; InterPro: IPR003953 In bacteria two distinct, membrane-bound, enzyme complexes are responsible for the interconversion of fumarate and succinate (1.3.99.1 from EC): fumarate reductase (Frd) is used in anaerobic growth, and succinate dehydrogenase (Sdh) is used in aerobic growth. Both complexes consist of two main components: a membrane-extrinsic component composed of a FAD-binding flavoprotein and an iron-sulphur protein; and an hydrophobic component composed of a membrane anchor protein and/or a cytochrome B. In eukaryotes mitochondrial succinate dehydrogenase (ubiquinone) (1.3.5.1 from EC) is an enzyme composed of two subunits: a FAD flavoprotein and and iron-sulphur protein. The flavoprotein subunit is a protein of about 60 to 70 Kd to which FAD is covalently bound to a histidine residue which is located in the N-terminal section of the protein []. The sequence around that histidine is well conserved in Frd and Sdh from various bacterial and eukaryotic species []. This family includes members that bind FAD such as the flavoprotein subunits from succinate and fumarate dehydrogenase, aspartate oxidase and the alpha subunit of adenylylsulphate reductase. ; GO: 0009055 electron carrier activity, 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 2BS4_A 2BS3_A 2BS2_A 1E7P_J 1QLB_A 1KNR_A 1KNP_A 1CHU_A 2E5V_A 3AEF_A ....

>PRK10015 oxidoreductase; Provisional

Probab=97.04  E-value=0.004  Score=63.09  Aligned_cols=79  Identities=22%  Similarity=0.367  Sum_probs=61.8

Q ss_pred             CeEEEEcCChHHHHHHHHHHhCCCeEe-----------------------------------------------------
Q 012165          208 KKVVVVGGGYIGMEVAAAAVGWKLDTT-----------------------------------------------------  234 (469)
Q Consensus       208 ~~vvVvG~G~~g~e~A~~l~~~g~~v~-----------------------------------------------------  234 (469)
                      -.|+|||+|+.|+-+|..|++.|.+|.                                                     
T Consensus         6 ~DViIVGgGpAG~~aA~~LA~~G~~VlliEr~~~~g~k~~~gg~i~~~~~~~l~~~~~~~~~i~~~~~~~~~~~~~~~~~   85 (429)
T PRK10015          6 FDAIVVGAGVAGSVAALVMARAGLDVLVIERGDSAGCKNMTGGRLYAHTLEAIIPGFAASAPVERKVTREKISFLTEESA   85 (429)
T ss_pred             cCEEEECcCHHHHHHHHHHHhCCCeEEEEecCCCCCcccccCceeecccHHHHcccccccCCccccccceeEEEEeCCCc
Confidence            369999999999999999999887775                                                     


Q ss_pred             ---------------------------eeHHHHHHcCcEEEcCCeEEEEEeCCCCcEEEEEcCCCCEEeCCEEEEccCCc
Q 012165          235 ---------------------------RYEQLYQQNGVKFVKGASIKNLEAGSDGRVAAVKLEDGSTIDADTIVIGIGAK  287 (469)
Q Consensus       235 ---------------------------~~~~~l~~~gV~~~~~~~v~~i~~~~~~~v~~v~~~~g~~i~~D~vi~a~G~~  287 (469)
                                                 .+.+..++.|++++.++.|+.+... ++.+..+.. ++.++.+|.||.|.|..
T Consensus        86 ~~~~~~~~~~~~~~~~~~~v~R~~fd~~L~~~a~~~Gv~i~~~~~V~~i~~~-~~~v~~v~~-~~~~i~A~~VI~AdG~~  163 (429)
T PRK10015         86 VTLDFHREQPDVPQHASYTVLRNRLDPWLMEQAEQAGAQFIPGVRVDALVRE-GNKVTGVQA-GDDILEANVVILADGVN  163 (429)
T ss_pred             eEeecccCCCCCCCcCceEeehhHHHHHHHHHHHHcCCEEECCcEEEEEEEe-CCEEEEEEe-CCeEEECCEEEEccCcc
Confidence                                       2344556789999999999998754 455544543 44579999999999975


Q ss_pred             c
Q 012165          288 P  288 (469)
Q Consensus       288 p  288 (469)
                      .
T Consensus       164 s  164 (429)
T PRK10015        164 S  164 (429)
T ss_pred             h
Confidence            4

>COG0445 GidA Flavin-dependent tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA [Cell cycle control, cell division, chromosome partitioning]

Probab=97.04  E-value=0.00069  Score=67.79  Aligned_cols=78  Identities=29%  Similarity=0.482  Sum_probs=59.5

Q ss_pred             CeEEEEcCChHHHHHHHHHHhCCCeEe-----------------------------------------------------
Q 012165          208 KKVVVVGGGYIGMEVAAAAVGWKLDTT-----------------------------------------------------  234 (469)
Q Consensus       208 ~~vvVvG~G~~g~e~A~~l~~~g~~v~-----------------------------------------------------  234 (469)
                      -.|+|||||..|+|.|.+.++.|.++.                                                     
T Consensus         5 ~DVIVIGgGHAG~EAA~AaARmG~ktlLlT~~~dtig~msCNPaIGG~~KG~lvrEIDALGG~Mg~~~D~~~IQ~r~LN~   84 (621)
T COG0445           5 YDVIVIGGGHAGVEAALAAARMGAKTLLLTLNLDTIGEMSCNPAIGGPGKGHLVREIDALGGLMGKAADKAGIQFRMLNS   84 (621)
T ss_pred             CceEEECCCccchHHHHhhhccCCeEEEEEcCCCceeecccccccCCcccceeEEeehhccchHHHhhhhcCCchhhccC
Confidence            469999999999999999999998875                                                     


Q ss_pred             ----------------ee----HHHH-HHcCcEEEcCCeEEEEEeCCCCcEEEEEcCCCCEEeCCEEEEccCC
Q 012165          235 ----------------RY----EQLY-QQNGVKFVKGASIKNLEAGSDGRVAAVKLEDGSTIDADTIVIGIGA  286 (469)
Q Consensus       235 ----------------~~----~~~l-~~~gV~~~~~~~v~~i~~~~~~~v~~v~~~~g~~i~~D~vi~a~G~  286 (469)
                                      .+    ++.+ ...++.++.+ .|+++...++.++.+|.+.+|..+.|+.||++||.
T Consensus        85 sKGPAVra~RaQaDk~~Y~~~mk~~le~~~NL~l~q~-~v~dli~e~~~~v~GV~t~~G~~~~a~aVVlTTGT  156 (621)
T COG0445          85 SKGPAVRAPRAQADKWLYRRAMKNELENQPNLHLLQG-EVEDLIVEEGQRVVGVVTADGPEFHAKAVVLTTGT  156 (621)
T ss_pred             CCcchhcchhhhhhHHHHHHHHHHHHhcCCCceehHh-hhHHHhhcCCCeEEEEEeCCCCeeecCEEEEeecc
Confidence                            12    2222 2357777655 35665533333588999999999999999999995

>PRK06183 mhpA 3-(3-hydroxyphenyl)propionate hydroxylase; Validated

Probab=97.04  E-value=0.0031  Score=65.94  Aligned_cols=81  Identities=27%  Similarity=0.353  Sum_probs=62.0

Q ss_pred             CCeEEEEcCChHHHHHHHHHHhCCCeEe----------------------------------------------------
Q 012165          207 AKKVVVVGGGYIGMEVAAAAVGWKLDTT----------------------------------------------------  234 (469)
Q Consensus       207 ~~~vvVvG~G~~g~e~A~~l~~~g~~v~----------------------------------------------------  234 (469)
                      ..+|+|||+|+.|+-+|..|++.|.++.                                                    
T Consensus        10 ~~dV~IVGaGp~Gl~lA~~L~~~G~~v~v~Er~~~~~~~~ra~~l~~~~~~~L~~lGl~~~l~~~~~~~~~~~~~~~~g~   89 (538)
T PRK06183         10 DTDVVIVGAGPVGLTLANLLGQYGVRVLVLERWPTLYDLPRAVGIDDEALRVLQAIGLADEVLPHTTPNHGMRFLDAKGR   89 (538)
T ss_pred             CCCEEEECCCHHHHHHHHHHHHCCCcEEEEecCCCCCCCCceeeeCHHHHHHHHHcCChhHHHhhcccCCceEEEcCCCC
Confidence            4579999999999999999999998876                                                    


Q ss_pred             ------------------------eeH----HHHHH-cCcEEEcCCeEEEEEeCCCCcEEEEEcC--CC--CEEeCCEEE
Q 012165          235 ------------------------RYE----QLYQQ-NGVKFVKGASIKNLEAGSDGRVAAVKLE--DG--STIDADTIV  281 (469)
Q Consensus       235 ------------------------~~~----~~l~~-~gV~~~~~~~v~~i~~~~~~~v~~v~~~--~g--~~i~~D~vi  281 (469)
                                              .++    +.+.+ .|+++++++++++++.++++.  .+.++  +|  +++.+|+||
T Consensus        90 ~~~~~~~~~~~~~g~~~~~~~~q~~le~~L~~~~~~~~gv~v~~g~~v~~i~~~~~~v--~v~~~~~~G~~~~i~ad~vV  167 (538)
T PRK06183         90 CLAEIARPSTGEFGWPRRNAFHQPLLEAVLRAGLARFPHVRVRFGHEVTALTQDDDGV--TVTLTDADGQRETVRARYVV  167 (538)
T ss_pred             EEEEEcCCCCCCCCCChhccCChHHHHHHHHHHHHhCCCcEEEcCCEEEEEEEcCCeE--EEEEEcCCCCEEEEEEEEEE
Confidence                                    011    22223 489999999999998765543  34454  56  479999999


Q ss_pred             EccCCccC
Q 012165          282 IGIGAKPT  289 (469)
Q Consensus       282 ~a~G~~p~  289 (469)
                      -|.|.+..
T Consensus       168 gADG~~S~  175 (538)
T PRK06183        168 GCDGANSF  175 (538)
T ss_pred             ecCCCchh
Confidence            99998654

>TIGR01790 carotene-cycl lycopene cyclase family protein

Probab=97.02  E-value=0.004  Score=62.24  Aligned_cols=78  Identities=23%  Similarity=0.311  Sum_probs=57.2

Q ss_pred             eEEEEcCChHHHHHHHHHHhCCCeEe------------------------------------------------------
Q 012165          209 KVVVVGGGYIGMEVAAAAVGWKLDTT------------------------------------------------------  234 (469)
Q Consensus       209 ~vvVvG~G~~g~e~A~~l~~~g~~v~------------------------------------------------------  234 (469)
                      .|+|||+|+.|+.+|..|++.|.+|.                                                      
T Consensus         1 DviIiGaG~AGl~~A~~la~~g~~v~liE~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   80 (388)
T TIGR01790         1 DLAVIGGGPAGLAIALELARPGLRVQLIEPHPPIPGNHTYGVWDDDLSDLGLADCVEHVWPDVYEYRFPKQPRKLGTAYG   80 (388)
T ss_pred             CEEEECCCHHHHHHHHHHHhCCCeEEEEccCCCCCCCccccccHhhhhhhchhhHHhhcCCCceEEecCCcchhcCCcee
Confidence            37899999999999998888777765                                                      


Q ss_pred             ---------eeHHHHHHcCcEEEcCCeEEEEEeCCCCcEEEEEcCCCCEEeCCEEEEccCCcc
Q 012165          235 ---------RYEQLYQQNGVKFVKGASIKNLEAGSDGRVAAVKLEDGSTIDADTIVIGIGAKP  288 (469)
Q Consensus       235 ---------~~~~~l~~~gV~~~~~~~v~~i~~~~~~~v~~v~~~~g~~i~~D~vi~a~G~~p  288 (469)
                               .+.+.+.+.|++++ ...+..++..+ +....|.+++|+++.+|.||.|+|..+
T Consensus        81 ~i~~~~l~~~l~~~~~~~gv~~~-~~~v~~i~~~~-~~~~~v~~~~g~~~~a~~VI~A~G~~s  141 (388)
T TIGR01790        81 SVDSTRLHEELLQKCPEGGVLWL-ERKAIHAEADG-VALSTVYCAGGQRIQARLVIDARGFGP  141 (388)
T ss_pred             EEcHHHHHHHHHHHHHhcCcEEE-ccEEEEEEecC-CceeEEEeCCCCEEEeCEEEECCCCch
Confidence                     12233355678776 44677776432 233357778888999999999999876

This family includes lycopene beta and epsilion cyclases (which form beta and delta carotene, respectively) from bacteria and plants as well as the plant capsanthin/capsorubin and neoxanthin cyclases which appear to have evolved from the plant lycopene cyclases. The plant lycopene epsilon cyclases also transform neurosporene to alpha zeacarotene.

>PRK08641 sdhA succinate dehydrogenase flavoprotein subunit; Reviewed

Probab=97.01  E-value=0.00073  Score=71.21  Aligned_cols=36  Identities=25%  Similarity=0.324  Sum_probs=32.0

Q ss_pred             CCCcEEEEcCcHHHHHHHHHHHHcCCCCCcEEEEcCCCC
Q 012165           50 ENREFVIVGGGNAAGYAARTFVEHGMADGRLCIVSKEAY   88 (469)
Q Consensus        50 ~~~~vvIIGgG~AGl~aA~~L~~~g~~~~~V~vie~~~~   88 (469)
                      ++.||||||+|.||++||.++++.|.   +|+|||+.+.
T Consensus         2 ~~~DVlVVG~G~AGl~AAi~Aa~~G~---~V~lieK~~~   37 (589)
T PRK08641          2 AKGKVIVVGGGLAGLMATIKAAEAGV---HVDLFSLVPV   37 (589)
T ss_pred             CCccEEEECchHHHHHHHHHHHHcCC---cEEEEEccCC
Confidence            45699999999999999999999987   7999998654

>TIGR02485 CobZ_N-term precorrin 3B synthase CobZ

Probab=97.01  E-value=0.0017  Score=65.89  Aligned_cols=30  Identities=23%  Similarity=0.307  Sum_probs=27.7

Q ss_pred             EEcCcHHHHHHHHHHHHcCCCCCcEEEEcCCCC
Q 012165           56 IVGGGNAAGYAARTFVEHGMADGRLCIVSKEAY   88 (469)
Q Consensus        56 IIGgG~AGl~aA~~L~~~g~~~~~V~vie~~~~   88 (469)
                      |||+|.||++||.++++.|.   +|+|+|+.+.
T Consensus         1 VVG~G~AGl~AA~~Aa~~Ga---~V~vlEK~~~   30 (432)
T TIGR02485         1 VIGGGLAGLCAAIEARRAGA---SVLLLEAAPR   30 (432)
T ss_pred             CCcccHHHHHHHHHHHhCCC---cEEEEeCCCC
Confidence            79999999999999999986   7999999874

CobZ is essential for cobalamin biosynthesis (by knockout of the R. capsulatus gene ) and is complemented by the characterized precorrin 3B synthase CobG. The enzyme has been shown to contain flavin, heme and Fe-S cluster cofactors and is believed to require dioxygen as a substrate. This model identifies the N-terminal portion of the R. capsulatus gene which, in other species exists as a separate protein. The C-terminal portion is homologous to the 2-component signal transduction system protein CitB (TIGR02484).

>TIGR02730 carot_isom carotene isomerase

Probab=97.00  E-value=0.00083  Score=69.49  Aligned_cols=52  Identities=23%  Similarity=0.275  Sum_probs=44.9

Q ss_pred             eeHHHHHHcCcEEEcCCeEEEEEeCCCCcEEEEEcCCCCEEeCCEEEEccCCc
Q 012165          235 RYEQLYQQNGVKFVKGASIKNLEAGSDGRVAAVKLEDGSTIDADTIVIGIGAK  287 (469)
Q Consensus       235 ~~~~~l~~~gV~~~~~~~v~~i~~~~~~~v~~v~~~~g~~i~~D~vi~a~G~~  287 (469)
                      .+.+.+++.|++++.++.|++|..+ ++++.+|.+.+|+++.+|.||+++|..
T Consensus       234 ~L~~~~~~~G~~i~~~~~V~~I~~~-~~~~~gv~~~~g~~~~ad~vV~a~~~~  285 (493)
T TIGR02730       234 SLVKGLEKHGGQIRYRARVTKIILE-NGKAVGVKLADGEKIYAKRIVSNATRW  285 (493)
T ss_pred             HHHHHHHHCCCEEEeCCeeeEEEec-CCcEEEEEeCCCCEEEcCEEEECCChH
Confidence            5667788999999999999999854 567778999999999999999998854

Members of this family, including sll0033 (crtH) of Synechocystis sp. PCC 6803, catalyze a cis-trans isomerization of carotenes to the all-trans lycopene, a reaction that can also occur non-enzymatically in light through photoisomerization.

>TIGR01372 soxA sarcosine oxidase, alpha subunit family, heterotetrameric form

Probab=96.96  E-value=0.0034  Score=70.21  Aligned_cols=90  Identities=22%  Similarity=0.308  Sum_probs=68.2

Q ss_pred             CCcEEEEcCcHHHHHHHHHHHHcCCCCCcEEEEcCCCCCCCCCCCCcccccCCCCCCCCCCCCCccccCCCCCCCCHhHH
Q 012165           51 NREFVIVGGGNAAGYAARTFVEHGMADGRLCIVSKEAYAPYERPALTKGYLFPLDKKPARLPGFHTCVGSGGERQTPEWY  130 (469)
Q Consensus        51 ~~~vvIIGgG~AGl~aA~~L~~~g~~~~~V~vie~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  130 (469)
                      .++|+|||+|+.|+.+|..|++.|..  .++|++..+..       ..                          ...+.+
T Consensus       317 gk~VvViG~G~~g~e~A~~L~~~G~~--vV~vv~~~~~~-------~~--------------------------~l~~~L  361 (985)
T TIGR01372       317 GKRIVVATNNDSAYRAAADLLAAGIA--VVAIIDARADV-------SP--------------------------EARAEA  361 (985)
T ss_pred             CCeEEEECCCHHHHHHHHHHHHcCCc--eEEEEccCcch-------hH--------------------------HHHHHH
Confidence            47999999999999999999998842  58888765321       00                          123457


Q ss_pred             HHCCcEEEeCCcEEEEeCCCc--EEEeC----CCeEEEeccEEeccCCCCC
Q 012165          131 KEKGIEMIYQDPVTSIDIEKQ--TLITN----SGKLLKYGSLIVATGCTAS  175 (469)
Q Consensus       131 ~~~~i~~~~~~~v~~id~~~~--~v~~~----~g~~~~yd~lVlAtG~~~~  175 (469)
                      ++.+|+++.++.+..+..++.  .|++.    +++++++|.|+++.|..|.
T Consensus       362 ~~~GV~i~~~~~v~~i~g~~~v~~V~l~~~~g~~~~i~~D~V~va~G~~Pn  412 (985)
T TIGR01372       362 RELGIEVLTGHVVAATEGGKRVSGVAVARNGGAGQRLEADALAVSGGWTPV  412 (985)
T ss_pred             HHcCCEEEcCCeEEEEecCCcEEEEEEEecCCceEEEECCEEEEcCCcCch
Confidence            888999999988988876543  34443    4567999999999998875

This model describes the alpha subunit of a family of known and putative heterotetrameric sarcosine oxidases. Five operons of such oxidases are found in Mesorhizobium loti and three in Agrobacterium tumefaciens, a high enough copy number to suggest that not all members are share the same function. The model is designated as subfamily rather than equivalog for this reason.Sarcosine oxidase catalyzes the oxidative demethylation of sarcosine to glycine. The reaction converts tetrahydrofolate to 5,10-methylene-tetrahydrofolate. The enzyme is known in monomeric and heterotetrameric (alpha,beta,gamma,delta) forms

>PRK06617 2-octaprenyl-6-methoxyphenyl hydroxylase; Validated

Probab=96.96  E-value=0.0045  Score=61.58  Aligned_cols=48  Identities=19%  Similarity=0.329  Sum_probs=36.6

Q ss_pred             HHHc-CcEEEcCCeEEEEEeCCCCcEEEEEcCCCCEEeCCEEEEccCCccCC
Q 012165          240 YQQN-GVKFVKGASIKNLEAGSDGRVAAVKLEDGSTIDADTIVIGIGAKPTV  290 (469)
Q Consensus       240 l~~~-gV~~~~~~~v~~i~~~~~~~v~~v~~~~g~~i~~D~vi~a~G~~p~~  290 (469)
                      +.+. +++++.+++++++..++++ + .+.++++ ++.+|+||-|-|.....
T Consensus       114 ~~~~~~v~~~~~~~v~~i~~~~~~-v-~v~~~~~-~~~adlvIgADG~~S~v  162 (374)
T PRK06617        114 ITNNPLITLIDNNQYQEVISHNDY-S-IIKFDDK-QIKCNLLIICDGANSKV  162 (374)
T ss_pred             HhcCCCcEEECCCeEEEEEEcCCe-E-EEEEcCC-EEeeCEEEEeCCCCchh
Confidence            3443 5899999999999765443 3 4777776 89999999999987653

>COG1635 THI4 Ribulose 1,5-bisphosphate synthetase, converts PRPP to RuBP, flavoprotein [Carbohydrate transport and metabolism]

Probab=96.95  E-value=0.005  Score=54.63  Aligned_cols=119  Identities=24%  Similarity=0.362  Sum_probs=80.2

Q ss_pred             CCeEEEEcCChHHHHHHHHHHhCCCeEe----------------------------------------------------
Q 012165          207 AKKVVVVGGGYIGMEVAAAAVGWKLDTT----------------------------------------------------  234 (469)
Q Consensus       207 ~~~vvVvG~G~~g~e~A~~l~~~g~~v~----------------------------------------------------  234 (469)
                      ...|+|||+|++|+-.|.+|++.|.++.                                                    
T Consensus        30 esDViIVGaGPsGLtAAyyLAk~g~kV~i~E~~ls~GGG~w~GGmlf~~iVv~~~a~~iL~e~gI~ye~~e~g~~v~ds~  109 (262)
T COG1635          30 ESDVIIVGAGPSGLTAAYYLAKAGLKVAIFERKLSFGGGIWGGGMLFNKIVVREEADEILDEFGIRYEEEEDGYYVADSA  109 (262)
T ss_pred             hccEEEECcCcchHHHHHHHHhCCceEEEEEeecccCCcccccccccceeeecchHHHHHHHhCCcceecCCceEEecHH
Confidence            4689999999999999999999999986                                                    


Q ss_pred             ----eeHHHHHHcCcEEEcCCeEEEEEeCCCCcEEEEEcC-----------CCCEEeCCEEEEccCCccCCc-hhh-h--
Q 012165          235 ----RYEQLYQQNGVKFVKGASIKNLEAGSDGRVAAVKLE-----------DGSTIDADTIVIGIGAKPTVS-PFE-R--  295 (469)
Q Consensus       235 ----~~~~~l~~~gV~~~~~~~v~~i~~~~~~~v~~v~~~-----------~g~~i~~D~vi~a~G~~p~~~-~~~-~--  295 (469)
                          .+....-+.|.++..+..++++--.++.++.+|...           |--.+++++||-+||.....- ++. .  
T Consensus       110 e~~skl~~~a~~aGaki~n~~~veDvi~r~~~rVaGvVvNWt~V~~~~lhvDPl~i~a~~VvDaTGHda~v~~~~~kr~~  189 (262)
T COG1635         110 EFASKLAARALDAGAKIFNGVSVEDVIVRDDPRVAGVVVNWTPVQMAGLHVDPLTIRAKAVVDATGHDAEVVSFLAKRIP  189 (262)
T ss_pred             HHHHHHHHHHHhcCceeeecceEEEEEEecCCceEEEEEecchhhhcccccCcceeeEEEEEeCCCCchHHHHHHHHhcc
Confidence                223333467899999999998865434367777653           224688999999999876532 221 1  


Q ss_pred             -cCCccc-CCC--------EEeCCCCCCCCCceEEeccccc
Q 012165          296 -VGLNSS-VGG--------IQVDGQFRTRMPGIFAIGDVAA  326 (469)
Q Consensus       296 -~gl~~~-~g~--------i~Vd~~~~t~~~~Vfa~GD~a~  326 (469)
                       ++++.. .+.        ..|+.+. --+|++|++|=.+.
T Consensus       190 ~l~~~~~Ge~~mw~e~~E~lvV~~T~-eV~pgL~vaGMa~~  229 (262)
T COG1635         190 ELGIEVPGEKSMWAERGEDLVVENTG-EVYPGLYVAGMAVN  229 (262)
T ss_pred             ccccccCCCcchhhhHHHHHHHhccc-cccCCeEeehhhHH
Confidence             122211 111        2222222 25799999997664

>PLN02328 lysine-specific histone demethylase 1 homolog

Probab=96.95  E-value=0.0013  Score=70.67  Aligned_cols=41  Identities=27%  Similarity=0.360  Sum_probs=36.0

Q ss_pred             CCCCCCcEEEEcCcHHHHHHHHHHHHcCCCCCcEEEEcCCCCCC
Q 012165           47 FANENREFVIVGGGNAAGYAARTFVEHGMADGRLCIVSKEAYAP   90 (469)
Q Consensus        47 ~~~~~~~vvIIGgG~AGl~aA~~L~~~g~~~~~V~vie~~~~~~   90 (469)
                      .....++|+|||||++|++||..|.+.|+   +|+|+|+....+
T Consensus       234 ~~~~~~~v~IiGaG~aGl~aA~~L~~~g~---~v~v~E~~~r~G  274 (808)
T PLN02328        234 EGVEPANVVVVGAGLAGLVAARQLLSMGF---KVVVLEGRARPG  274 (808)
T ss_pred             CCCCCCCEEEECcCHHHHHHHHHHHHCCC---cEEEEeccccCC
Confidence            34556899999999999999999999987   799999988764

>PRK12778 putative bifunctional 2-polyprenylphenol hydroxylase/glutamate synthase subunit beta; Provisional

Probab=96.94  E-value=0.0014  Score=71.45  Aligned_cols=75  Identities=27%  Similarity=0.348  Sum_probs=56.8

Q ss_pred             cCCeEEEEcCChHHHHHHHHHHhCCCeEe---------------------------eeHHHHHHcCcEEEcCCeEEEEEe
Q 012165          206 KAKKVVVVGGGYIGMEVAAAAVGWKLDTT---------------------------RYEQLYQQNGVKFVKGASIKNLEA  258 (469)
Q Consensus       206 ~~~~vvVvG~G~~g~e~A~~l~~~g~~v~---------------------------~~~~~l~~~gV~~~~~~~v~~i~~  258 (469)
                      .+++|+|||+|+.|+.+|..|++.|.+|+                           ...+.+++.||++++++.+..   
T Consensus       430 ~~~~V~IIGaGpAGl~aA~~l~~~G~~V~v~e~~~~~GG~l~~gip~~rlp~~~~~~~~~~l~~~gv~~~~~~~v~~---  506 (752)
T PRK12778        430 NGKKVAVIGSGPAGLSFAGDLAKRGYDVTVFEALHEIGGVLKYGIPEFRLPKKIVDVEIENLKKLGVKFETDVIVGK---  506 (752)
T ss_pred             CCCEEEEECcCHHHHHHHHHHHHCCCeEEEEecCCCCCCeeeecCCCCCCCHHHHHHHHHHHHHCCCEEECCCEECC---
Confidence            36799999999999999999999999887                           112456778999998864411   


Q ss_pred             CCCCcEEEEEcCCCCEEeCCEEEEccCC-ccCC
Q 012165          259 GSDGRVAAVKLEDGSTIDADTIVIGIGA-KPTV  290 (469)
Q Consensus       259 ~~~~~v~~v~~~~g~~i~~D~vi~a~G~-~p~~  290 (469)
                             .+.+++.....+|.||+|+|. .|..
T Consensus       507 -------~v~~~~l~~~~ydavvlAtGa~~~~~  532 (752)
T PRK12778        507 -------TITIEELEEEGFKGIFIASGAGLPNF  532 (752)
T ss_pred             -------cCCHHHHhhcCCCEEEEeCCCCCCCC
Confidence                   234444445679999999998 4653

>KOG1399 consensus Flavin-containing monooxygenase [Secondary metabolites biosynthesis, transport and catabolism]

Probab=96.94  E-value=0.0089  Score=60.21  Aligned_cols=116  Identities=17%  Similarity=0.267  Sum_probs=76.5

Q ss_pred             cCCeEEEEcCChHHHHHHHHHHhCCCeEe---------------------------------------------------
Q 012165          206 KAKKVVVVGGGYIGMEVAAAAVGWKLDTT---------------------------------------------------  234 (469)
Q Consensus       206 ~~~~vvVvG~G~~g~e~A~~l~~~g~~v~---------------------------------------------------  234 (469)
                      ..++++|||+|++|+-.|..|.+.|.+++                                                   
T Consensus         5 ~~~~vaIIGAG~sGL~~ar~l~~~g~~v~vfEr~~~iGGlW~y~~~~~~~~ss~Y~~l~tn~pKe~~~~~dfpf~~~~~~   84 (448)
T KOG1399|consen    5 MSKDVAVIGAGPAGLAAARELLREGHEVVVFERTDDIGGLWKYTENVEVVHSSVYKSLRTNLPKEMMGYSDFPFPERDPR   84 (448)
T ss_pred             CCCceEEECcchHHHHHHHHHHHCCCCceEEEecCCccceEeecCcccccccchhhhhhccCChhhhcCCCCCCcccCcc
Confidence            36899999999999999999999998876                                                   


Q ss_pred             ----------eeHHHHHHcCc--EEEcCCeEEEEEeCCCCcEEEEEcCCC----CEEeCCEEEEccCCc--cCCchhhhc
Q 012165          235 ----------RYEQLYQQNGV--KFVKGASIKNLEAGSDGRVAAVKLEDG----STIDADTIVIGIGAK--PTVSPFERV  296 (469)
Q Consensus       235 ----------~~~~~l~~~gV--~~~~~~~v~~i~~~~~~~v~~v~~~~g----~~i~~D~vi~a~G~~--p~~~~~~~~  296 (469)
                                .++...+.-++  .+.+++++.+++...+|. -.|...++    ++.-+|.|++|+|..  |+.+.....
T Consensus        85 ~~p~~~e~~~YL~~yA~~F~l~~~i~f~~~v~~v~~~~~gk-W~V~~~~~~~~~~~~ifd~VvVctGh~~~P~~P~~~g~  163 (448)
T KOG1399|consen   85 YFPSHREVLEYLRDYAKHFDLLKMINFNTEVVRVDSIDKGK-WRVTTKDNGTQIEEEIFDAVVVCTGHYVEPRIPQIPGP  163 (448)
T ss_pred             cCCCHHHHHHHHHHHHHhcChhhheEecccEEEEeeccCCc-eeEEEecCCcceeEEEeeEEEEcccCcCCCCCCcCCCC
Confidence                      33444445554  577788888887654232 23444333    467799999999987  655544443


Q ss_pred             CCcccCCCEEeCCCCCC----CCCceEEec
Q 012165          297 GLNSSVGGIQVDGQFRT----RMPGIFAIG  322 (469)
Q Consensus       297 gl~~~~g~i~Vd~~~~t----~~~~Vfa~G  322 (469)
                      +++.=.|.+.-...++.    ....|.++|
T Consensus       164 ~~~~f~G~~iHS~~Yk~~e~f~~k~VlVIG  193 (448)
T KOG1399|consen  164 GIESFKGKIIHSHDYKSPEKFRDKVVLVVG  193 (448)
T ss_pred             chhhcCCcceehhhccCcccccCceEEEEC
Confidence            33332344443333332    346788888

>PRK06475 salicylate hydroxylase; Provisional

Probab=96.93  E-value=0.0061  Score=61.26  Aligned_cols=45  Identities=13%  Similarity=0.254  Sum_probs=33.4

Q ss_pred             cCcEEEcCCeEEEEEeCCCCcEEEEEc---CCCCEEeCCEEEEccCCccC
Q 012165          243 NGVKFVKGASIKNLEAGSDGRVAAVKL---EDGSTIDADTIVIGIGAKPT  289 (469)
Q Consensus       243 ~gV~~~~~~~v~~i~~~~~~~v~~v~~---~~g~~i~~D~vi~a~G~~p~  289 (469)
                      .|+++++++++++++..+++ + .+++   .+++.+.+|+||-|-|....
T Consensus       121 ~~i~v~~~~~v~~~~~~~~~-v-~v~~~~~~~~~~~~adlvIgADG~~S~  168 (400)
T PRK06475        121 PGIEIKLGAEMTSQRQTGNS-I-TATIIRTNSVETVSAAYLIACDGVWSM  168 (400)
T ss_pred             CCcEEEECCEEEEEecCCCc-e-EEEEEeCCCCcEEecCEEEECCCccHh
Confidence            47999999999999854333 3 3444   34467999999999998754

>PTZ00188 adrenodoxin reductase; Provisional

Probab=96.92  E-value=0.0032  Score=63.60  Aligned_cols=73  Identities=14%  Similarity=0.264  Sum_probs=47.8

Q ss_pred             cCCeEEEEcCChHHHHHHHHHH-hCCCeEe----------------------------eeHHHHHHcCcEEEcCCeEEEE
Q 012165          206 KAKKVVVVGGGYIGMEVAAAAV-GWKLDTT----------------------------RYEQLYQQNGVKFVKGASIKNL  256 (469)
Q Consensus       206 ~~~~vvVvG~G~~g~e~A~~l~-~~g~~v~----------------------------~~~~~l~~~gV~~~~~~~v~~i  256 (469)
                      .+++|+|||+|+.|+.+|..|. +.+.+|+                            .+.+.+...+++++.+..+-. 
T Consensus        38 ~~krVAIVGaGPAGlyaA~~Ll~~~g~~VtlfEk~p~pgGLvR~GVaPdh~~~k~v~~~f~~~~~~~~v~f~gnv~VG~-  116 (506)
T PTZ00188         38 KPFKVGIIGAGPSALYCCKHLLKHERVKVDIFEKLPNPYGLIRYGVAPDHIHVKNTYKTFDPVFLSPNYRFFGNVHVGV-  116 (506)
T ss_pred             CCCEEEEECCcHHHHHHHHHHHHhcCCeEEEEecCCCCccEEEEeCCCCCccHHHHHHHHHHHHhhCCeEEEeeeEecC-
Confidence            5789999999999999999764 6688887                            222334456777764432211 


Q ss_pred             EeCCCCcEEEEEcCCCCEEeCCEEEEccCCccC
Q 012165          257 EAGSDGRVAAVKLEDGSTIDADTIVIGIGAKPT  289 (469)
Q Consensus       257 ~~~~~~~v~~v~~~~g~~i~~D~vi~a~G~~p~  289 (469)
                               .+..++= ...+|.||+|+|..+.
T Consensus       117 ---------Dvt~eeL-~~~YDAVIlAtGA~~l  139 (506)
T PTZ00188        117 ---------DLKMEEL-RNHYNCVIFCCGASEV  139 (506)
T ss_pred             ---------ccCHHHH-HhcCCEEEEEcCCCCC
Confidence                     1111111 2378999999998853

>TIGR01377 soxA_mon sarcosine oxidase, monomeric form

Probab=96.90  E-value=0.006  Score=60.77  Aligned_cols=26  Identities=31%  Similarity=0.336  Sum_probs=23.5

Q ss_pred             eEEEEcCChHHHHHHHHHHhCCCeEe
Q 012165          209 KVVVVGGGYIGMEVAAAAVGWKLDTT  234 (469)
Q Consensus       209 ~vvVvG~G~~g~e~A~~l~~~g~~v~  234 (469)
                      +|+|||+|.+|+-+|..|+++|.+|+
T Consensus         2 dvvIIGaGi~G~s~A~~La~~g~~V~   27 (380)
T TIGR01377         2 DVIVVGAGIMGCFAAYHLAKHGKKTL   27 (380)
T ss_pred             cEEEECCCHHHHHHHHHHHHCCCeEE
Confidence            58999999999999999999988876

Sarcosine oxidase catalyzes the oxidative demethylation of sarcosine to glycine. The reaction converts tetrahydrofolate to 5,10-methylene-tetrahydrofolate. The enzyme is known in monomeric and heterotetrameric (alpha,beta,gamma,delta) forms

>COG1231 Monoamine oxidase [Amino acid transport and metabolism]

Probab=96.90  E-value=0.0012  Score=64.85  Aligned_cols=40  Identities=23%  Similarity=0.253  Sum_probs=35.9

Q ss_pred             CCCCcEEEEcCcHHHHHHHHHHHHcCCCCCcEEEEcCCCCCCC
Q 012165           49 NENREFVIVGGGNAAGYAARTFVEHGMADGRLCIVSKEAYAPY   91 (469)
Q Consensus        49 ~~~~~vvIIGgG~AGl~aA~~L~~~g~~~~~V~vie~~~~~~~   91 (469)
                      +...||+|||+|.|||++|..|.+.|+   +|+|+|..+..+.
T Consensus         5 ~~~~~viivGaGlaGL~AA~eL~kaG~---~v~ilEar~r~GG   44 (450)
T COG1231           5 PKTADVIIVGAGLAGLSAAYELKKAGY---QVQILEARDRVGG   44 (450)
T ss_pred             CCCCcEEEECCchHHHHHHHHHhhcCc---EEEEEeccCCcCc
Confidence            556899999999999999999999999   7999999887653

>PRK07121 hypothetical protein; Validated

Probab=96.90  E-value=0.0014  Score=67.76  Aligned_cols=38  Identities=29%  Similarity=0.383  Sum_probs=34.1

Q ss_pred             CCCcEEEEcCcHHHHHHHHHHHHcCCCCCcEEEEcCCCCCC
Q 012165           50 ENREFVIVGGGNAAGYAARTFVEHGMADGRLCIVSKEAYAP   90 (469)
Q Consensus        50 ~~~~vvIIGgG~AGl~aA~~L~~~g~~~~~V~vie~~~~~~   90 (469)
                      ..+||||||+|.||++||.++++.|.   +|+|+|+.+...
T Consensus        19 ~~~DVvVVGaG~AGl~AA~~aae~G~---~VillEK~~~~g   56 (492)
T PRK07121         19 DEADVVVVGFGAAGACAAIEAAAAGA---RVLVLERAAGAG   56 (492)
T ss_pred             CccCEEEECcCHHHHHHHHHHHHCCC---eEEEEeCCCCCC
Confidence            46899999999999999999999987   899999987643

>PRK12814 putative NADPH-dependent glutamate synthase small subunit; Provisional

Probab=96.89  E-value=0.0051  Score=65.70  Aligned_cols=95  Identities=23%  Similarity=0.299  Sum_probs=61.6

Q ss_pred             CCCcEEEEcCcHHHHHHHHHHHHcCCCCCcEEEEcCCCCCCCCCCCCcccccCCCCCCCCCCCCCccccCCCCCCCCHhH
Q 012165           50 ENREFVIVGGGNAAGYAARTFVEHGMADGRLCIVSKEAYAPYERPALTKGYLFPLDKKPARLPGFHTCVGSGGERQTPEW  129 (469)
Q Consensus        50 ~~~~vvIIGgG~AGl~aA~~L~~~g~~~~~V~vie~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  129 (469)
                      ..++|+|||||..|+.+|..+++.|..  +|+|+......     .++.      .  .                .....
T Consensus       322 ~gk~VvVIGgG~~a~e~A~~l~~~Ga~--~Vtlv~r~~~~-----~mpa------~--~----------------~ei~~  370 (652)
T PRK12814        322 PGKKVVVIGGGNTAIDAARTALRLGAE--SVTILYRRTRE-----EMPA------N--R----------------AEIEE  370 (652)
T ss_pred             CCCeEEEECCCHHHHHHHHHHHHcCCC--eEEEeeecCcc-----cCCC------C--H----------------HHHHH
Confidence            457999999999999999999998742  69999765421     0000      0  0                00122


Q ss_pred             HHHCCcEEEeCCcEEEEeCCCcE--EE---eC---------------CC--eEEEeccEEeccCCCCC
Q 012165          130 YKEKGIEMIYQDPVTSIDIEKQT--LI---TN---------------SG--KLLKYGSLIVATGCTAS  175 (469)
Q Consensus       130 ~~~~~i~~~~~~~v~~id~~~~~--v~---~~---------------~g--~~~~yd~lVlAtG~~~~  175 (469)
                      ..+.||+++.+..+..+..++..  +.   +.               +|  ..+++|.||+|+|..|.
T Consensus       371 a~~eGV~i~~~~~~~~i~~~~~~~~v~~~~~~~~~~d~~G~~~~~~~~g~~~~i~~D~VI~AiG~~p~  438 (652)
T PRK12814        371 ALAEGVSLRELAAPVSIERSEGGLELTAIKMQQGEPDESGRRRPVPVEGSEFTLQADTVISAIGQQVD  438 (652)
T ss_pred             HHHcCCcEEeccCcEEEEecCCeEEEEEEEEEecccCCCCCCcceecCCceEEEECCEEEECCCCcCC
Confidence            34568888887777666543321  11   11               12  25899999999998765

>PLN02676 polyamine oxidase

Probab=96.89  E-value=0.0014  Score=67.41  Aligned_cols=42  Identities=26%  Similarity=0.328  Sum_probs=35.7

Q ss_pred             CCCCCcEEEEcCcHHHHHHHHHHHHcCCCCCcEEEEcCCCCCCC
Q 012165           48 ANENREFVIVGGGNAAGYAARTFVEHGMADGRLCIVSKEAYAPY   91 (469)
Q Consensus        48 ~~~~~~vvIIGgG~AGl~aA~~L~~~g~~~~~V~vie~~~~~~~   91 (469)
                      ...++||+|||||++||+||.+|++.|..  +|+|+|+....+.
T Consensus        23 ~~~~~~v~IIGaG~sGL~aa~~L~~~g~~--~v~vlE~~~~~GG   64 (487)
T PLN02676         23 AKPSPSVIIVGAGMSGISAAKTLSEAGIE--DILILEATDRIGG   64 (487)
T ss_pred             ccCCCCEEEECCCHHHHHHHHHHHHcCCC--cEEEecCCCCCCC
Confidence            34568999999999999999999999862  6999999887643

>PRK06185 hypothetical protein; Provisional

Probab=96.89  E-value=0.0062  Score=61.30  Aligned_cols=82  Identities=27%  Similarity=0.353  Sum_probs=62.0

Q ss_pred             CCeEEEEcCChHHHHHHHHHHhCCCeEe----------------------------------------------------
Q 012165          207 AKKVVVVGGGYIGMEVAAAAVGWKLDTT----------------------------------------------------  234 (469)
Q Consensus       207 ~~~vvVvG~G~~g~e~A~~l~~~g~~v~----------------------------------------------------  234 (469)
                      ..+|+|||||++|+-+|..|++.|.+++                                                    
T Consensus         6 ~~dV~IvGgG~~Gl~~A~~La~~G~~v~liE~~~~~~~~~r~~~l~~~s~~~L~~lG~~~~~~~~~~~~~~~~~~~~~~~   85 (407)
T PRK06185          6 TTDCCIVGGGPAGMMLGLLLARAGVDVTVLEKHADFLRDFRGDTVHPSTLELMDELGLLERFLELPHQKVRTLRFEIGGR   85 (407)
T ss_pred             cccEEEECCCHHHHHHHHHHHhCCCcEEEEecCCccCccccCceeChhHHHHHHHcCChhHHhhcccceeeeEEEEECCe
Confidence            4579999999999999999999988775                                                    


Q ss_pred             ---------------------------eeHHHHHH-cCcEEEcCCeEEEEEeCCCCcEEEEE--cCCCC-EEeCCEEEEc
Q 012165          235 ---------------------------RYEQLYQQ-NGVKFVKGASIKNLEAGSDGRVAAVK--LEDGS-TIDADTIVIG  283 (469)
Q Consensus       235 ---------------------------~~~~~l~~-~gV~~~~~~~v~~i~~~~~~~v~~v~--~~~g~-~i~~D~vi~a  283 (469)
                                                 .+.+.+++ .|++++.++++.++..+ ++.+.++.  ..+|+ ++.+|+||.|
T Consensus        86 ~~~~~~~~~~~~~~~~~~~v~~~~l~~~L~~~~~~~~~v~i~~~~~v~~~~~~-~~~v~~v~~~~~~g~~~i~a~~vI~A  164 (407)
T PRK06185         86 TVTLADFSRLPTPYPYIAMMPQWDFLDFLAEEASAYPNFTLRMGAEVTGLIEE-GGRVTGVRARTPDGPGEIRADLVVGA  164 (407)
T ss_pred             EEEecchhhcCCCCCcEEEeehHHHHHHHHHHHhhCCCcEEEeCCEEEEEEEe-CCEEEEEEEEcCCCcEEEEeCEEEEC
Confidence                                       11222333 48999999999999864 44444343  45664 7999999999


Q ss_pred             cCCccC
Q 012165          284 IGAKPT  289 (469)
Q Consensus       284 ~G~~p~  289 (469)
                      .|....
T Consensus       165 dG~~S~  170 (407)
T PRK06185        165 DGRHSR  170 (407)
T ss_pred             CCCchH
Confidence            998753

>PRK05257 malate:quinone oxidoreductase; Validated

Probab=96.89  E-value=0.0012  Score=67.88  Aligned_cols=63  Identities=22%  Similarity=0.470  Sum_probs=43.7

Q ss_pred             eeHHHHHHcC-cEEEcCCeEEEEEeCCCCcEEEEE---cCCCC--EEeCCEEEEccCCccCCchhhhcCCc
Q 012165          235 RYEQLYQQNG-VKFVKGASIKNLEAGSDGRVAAVK---LEDGS--TIDADTIVIGIGAKPTVSPFERVGLN  299 (469)
Q Consensus       235 ~~~~~l~~~g-V~~~~~~~v~~i~~~~~~~v~~v~---~~~g~--~i~~D~vi~a~G~~p~~~~~~~~gl~  299 (469)
                      .+.+.+++.| ++++++++|+.++..+++.+ .+.   +.+|+  ++.+|.||+|.|.... .+++.+|+.
T Consensus       188 aL~~~a~~~Ggv~i~~~teV~~I~~~~dg~~-~v~~~~~~~G~~~~i~A~~VVvaAGg~s~-~L~~~~Gi~  256 (494)
T PRK05257        188 QLVGYLQKQGNFELQLGHEVRDIKRNDDGSW-TVTVKDLKTGEKRTVRAKFVFIGAGGGAL-PLLQKSGIP  256 (494)
T ss_pred             HHHHHHHhCCCeEEEeCCEEEEEEECCCCCE-EEEEEEcCCCceEEEEcCEEEECCCcchH-HHHHHcCCC
Confidence            3445566766 99999999999987555533 233   33453  6999999999998653 456666554

>PLN02852 ferredoxin-NADP+ reductase

Probab=96.89  E-value=0.0018  Score=66.15  Aligned_cols=73  Identities=19%  Similarity=0.266  Sum_probs=53.9

Q ss_pred             cCCeEEEEcCChHHHHHHHHHHh--CCCeEe----------------------------eeHHHHHHcCcEEEcCCeEEE
Q 012165          206 KAKKVVVVGGGYIGMEVAAAAVG--WKLDTT----------------------------RYEQLYQQNGVKFVKGASIKN  255 (469)
Q Consensus       206 ~~~~vvVvG~G~~g~e~A~~l~~--~g~~v~----------------------------~~~~~l~~~gV~~~~~~~v~~  255 (469)
                      .+++|+|||+|+.|+.+|..|++  .|.+|+                            .+.+.++..+|+++.+..+..
T Consensus        25 ~~~~VaIVGaGPAGl~AA~~L~~~~~g~~Vtv~E~~p~pgGlvr~gvaP~~~~~k~v~~~~~~~~~~~~v~~~~nv~vg~  104 (491)
T PLN02852         25 EPLHVCVVGSGPAGFYTADKLLKAHDGARVDIIERLPTPFGLVRSGVAPDHPETKNVTNQFSRVATDDRVSFFGNVTLGR  104 (491)
T ss_pred             CCCcEEEECccHHHHHHHHHHHhhCCCCeEEEEecCCCCcceEeeccCCCcchhHHHHHHHHHHHHHCCeEEEcCEEECc
Confidence            46799999999999999999986  688887                            233456677888887754411


Q ss_pred             EEeCCCCcEEEEEcCCCCEEeCCEEEEccCCccC
Q 012165          256 LEAGSDGRVAAVKLEDGSTIDADTIVIGIGAKPT  289 (469)
Q Consensus       256 i~~~~~~~v~~v~~~~g~~i~~D~vi~a~G~~p~  289 (469)
                                .+.+++-. ..+|.||+|+|..+.
T Consensus       105 ----------dvtl~~L~-~~yDaVIlAtGa~~~  127 (491)
T PLN02852        105 ----------DVSLSELR-DLYHVVVLAYGAESD  127 (491)
T ss_pred             ----------cccHHHHh-hhCCEEEEecCCCCC
Confidence                      23444432 479999999999764

>TIGR01789 lycopene_cycl lycopene cyclase

Probab=96.86  E-value=0.0049  Score=61.15  Aligned_cols=75  Identities=29%  Similarity=0.434  Sum_probs=54.6

Q ss_pred             eEEEEcCChHHHHHHHHHHhC--CCeEe----------------------------------------------------
Q 012165          209 KVVVVGGGYIGMEVAAAAVGW--KLDTT----------------------------------------------------  234 (469)
Q Consensus       209 ~vvVvG~G~~g~e~A~~l~~~--g~~v~----------------------------------------------------  234 (469)
                      .|+|||+|+.|+.+|..|++.  |.+|.                                                    
T Consensus         1 DviIvGaG~AGl~lA~~L~~~~~g~~V~lle~~~~~~~~~tw~~~~~~~~~~~~~~~~~~v~~~W~~~~v~~~~~~~~l~   80 (370)
T TIGR01789         1 DCIIVGGGLAGGLIALRLQRARPDFRIRVIEAGRTIGGNHTWSFFDSDLSDAQHAWLADLVQTDWPGYEVRFPKYRRKLK   80 (370)
T ss_pred             CEEEECccHHHHHHHHHHHhcCCCCeEEEEeCCCCCCCcccceecccccchhhhhhhhhhheEeCCCCEEECcchhhhcC
Confidence            378999999999999999876  77765                                                    


Q ss_pred             ---------ee-HHHHHHcCcEEEcCCeEEEEEeCCCCcEEEEEcCCCCEEeCCEEEEccCCccC
Q 012165          235 ---------RY-EQLYQQNGVKFVKGASIKNLEAGSDGRVAAVKLEDGSTIDADTIVIGIGAKPT  289 (469)
Q Consensus       235 ---------~~-~~~l~~~gV~~~~~~~v~~i~~~~~~~v~~v~~~~g~~i~~D~vi~a~G~~p~  289 (469)
                               .+ +..+++.+..++.+.+|.+++.  +    +|++++|+++.+|.||.|.|.++.
T Consensus        81 ~~Y~~I~r~~f~~~l~~~l~~~i~~~~~V~~v~~--~----~v~l~dg~~~~A~~VI~A~G~~s~  139 (370)
T TIGR01789        81 TAYRSMTSTRFHEGLLQAFPEGVILGRKAVGLDA--D----GVDLAPGTRINARSVIDCRGFKPS  139 (370)
T ss_pred             CCceEEEHHHHHHHHHHhhcccEEecCEEEEEeC--C----EEEECCCCEEEeeEEEECCCCCCC
Confidence                     00 1112322444666788888852  2    255588999999999999998864

This model represents a family of bacterial lycopene cyclases catalyzing the transformation of lycopene to carotene. These enzymes are found in a limited spectrum of alpha and gamma proteobacteria as well as Flavobacterium.

>TIGR03219 salicylate_mono salicylate 1-monooxygenase

Probab=96.86  E-value=0.0064  Score=61.41  Aligned_cols=44  Identities=20%  Similarity=0.242  Sum_probs=33.4

Q ss_pred             CcEEEcCCeEEEEEeCCCCcEEEEEcCCCCEEeCCEEEEccCCccC
Q 012165          244 GVKFVKGASIKNLEAGSDGRVAAVKLEDGSTIDADTIVIGIGAKPT  289 (469)
Q Consensus       244 gV~~~~~~~v~~i~~~~~~~v~~v~~~~g~~i~~D~vi~a~G~~p~  289 (469)
                      ++.+++++++++++..+++ + .+.+++|+++.+|+||.|.|....
T Consensus       117 ~~~v~~~~~v~~i~~~~~~-~-~v~~~~g~~~~ad~vVgADG~~S~  160 (414)
T TIGR03219       117 EGIASFGKRATQIEEQAEE-V-QVLFTDGTEYRCDLLIGADGIKSA  160 (414)
T ss_pred             CceEEcCCEEEEEEecCCc-E-EEEEcCCCEEEeeEEEECCCccHH
Confidence            3456778888888754443 3 578889999999999999997653

Members of this protein family are salicylate 1-monooxygenase, also called salicylate hydroxylase. This enzyme converts salicylate to catechol, which is a common intermediate in the degradation of a number of aromatic compounds (phenol, toluene, benzoate, etc.). The gene for this protein may occur in catechol degradation genes, such as those of the meta-cleavage pathway.

>PF12831 FAD_oxidored: FAD dependent oxidoreductase; PDB: 3ADA_A 1VRQ_A 1X31_A 3AD9_A 3AD8_A 3AD7_A 2GAG_A 2GAH_A

Probab=96.86  E-value=0.00089  Score=67.81  Aligned_cols=88  Identities=25%  Similarity=0.353  Sum_probs=20.9

Q ss_pred             eEEEEcCChHHHHHHHHHHhCCCeEe------------------------------------------------------
Q 012165          209 KVVVVGGGYIGMEVAAAAVGWKLDTT------------------------------------------------------  234 (469)
Q Consensus       209 ~vvVvG~G~~g~e~A~~l~~~g~~v~------------------------------------------------------  234 (469)
                      .|+|||||+.|+-.|..+++.|.+|.                                                      
T Consensus         1 DVVVvGgG~aG~~AAi~AAr~G~~VlLiE~~~~lGG~~t~~~~~~~~~~~~~~~~~~gi~~e~~~~~~~~~~~~~~~~~~   80 (428)
T PF12831_consen    1 DVVVVGGGPAGVAAAIAAARAGAKVLLIEKGGFLGGMATSGGVSPFDGNHDEDQVIGGIFREFLNRLRARGGYPQEDRYG   80 (428)
T ss_dssp             EEEEE--SHHHHHHHHHHHHTTS-EEEE-SSSSSTGGGGGSSS-EETTEEHHHHHHHHHHHHHHHST-------------
T ss_pred             CEEEECccHHHHHHHHHHHHCCCEEEEEECCccCCCcceECCcCChhhcchhhccCCCHHHHHHHHHhhhcccccccccc
Confidence            48999999999999999999998886                                                      


Q ss_pred             --------------eeHHHHHHcCcEEEcCCeEEEEEeCCCCcEEEEEcCC---CCEEeCCEEEEccCCccCCchhhhcC
Q 012165          235 --------------RYEQLYQQNGVKFVKGASIKNLEAGSDGRVAAVKLED---GSTIDADTIVIGIGAKPTVSPFERVG  297 (469)
Q Consensus       235 --------------~~~~~l~~~gV~~~~~~~v~~i~~~~~~~v~~v~~~~---g~~i~~D~vi~a~G~~p~~~~~~~~g  297 (469)
                                    .+.+++++.||++++++.+.++..+ ++++.+|.+.+   ..++.++.+|-|+|. .  +++..+|
T Consensus        81 ~~~~~~~~~~~~~~~l~~~l~e~gv~v~~~t~v~~v~~~-~~~i~~V~~~~~~g~~~i~A~~~IDaTG~-g--~l~~~aG  156 (428)
T PF12831_consen   81 WVSNVPFDPEVFKAVLDEMLAEAGVEVLLGTRVVDVIRD-GGRITGVIVETKSGRKEIRAKVFIDATGD-G--DLAALAG  156 (428)
T ss_dssp             --------------------------------------------------------------------------------
T ss_pred             ccccccccccccccccccccccccccccccccccccccc-ccccccccccccccccccccccccccccc-c--ccccccc
Confidence                          2445667789999999999999864 66788888875   468999999999993 2  4444445


Q ss_pred             Ccc
Q 012165          298 LNS  300 (469)
Q Consensus       298 l~~  300 (469)
                      .+.
T Consensus       157 ~~~  159 (428)
T PF12831_consen  157 APY  159 (428)
T ss_dssp             ---
T ss_pred             ccc
Confidence            443

>TIGR01318 gltD_gamma_fam glutamate synthase small subunit family protein, proteobacterial

Probab=96.85  E-value=0.0078  Score=61.72  Aligned_cols=95  Identities=23%  Similarity=0.348  Sum_probs=64.7

Q ss_pred             CCCcEEEEcCcHHHHHHHHHHHHcCCCCCcEEEEcCCCCCCCCCCCCcccccCCCCCCCCCCCCCccccCCCCCCCCHhH
Q 012165           50 ENREFVIVGGGNAAGYAARTFVEHGMADGRLCIVSKEAYAPYERPALTKGYLFPLDKKPARLPGFHTCVGSGGERQTPEW  129 (469)
Q Consensus        50 ~~~~vvIIGgG~AGl~aA~~L~~~g~~~~~V~vie~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  129 (469)
                      ..++++|||+|..|+.+|..+.+.|..  +|+||+..+....  |.         .                  ....+.
T Consensus       281 ~gk~VvVIGgG~~a~d~A~~a~~~Ga~--~Vtvv~r~~~~~~--~~---------~------------------~~e~~~  329 (467)
T TIGR01318       281 EGKRVVVLGGGDTAMDCVRTAIRLGAA--SVTCAYRRDEANM--PG---------S------------------RREVAN  329 (467)
T ss_pred             CCCEEEEECCcHHHHHHHHHHHHcCCC--eEEEEEecCcccC--CC---------C------------------HHHHHH
Confidence            457999999999999999999998742  6999986543110  00         0                  011234


Q ss_pred             HHHCCcEEEeCCcEEEEeCCC-cE---EEe--------------------CCCeEEEeccEEeccCCCCC
Q 012165          130 YKEKGIEMIYQDPVTSIDIEK-QT---LIT--------------------NSGKLLKYGSLIVATGCTAS  175 (469)
Q Consensus       130 ~~~~~i~~~~~~~v~~id~~~-~~---v~~--------------------~~g~~~~yd~lVlAtG~~~~  175 (469)
                      +.+.|++++.++.+..+..++ ..   |++                    .+...+++|.||+|+|..|.
T Consensus       330 ~~~~GV~~~~~~~~~~i~~~~~g~v~~v~~~~~~~~~~~~~g~~~~~~~~g~~~~i~~D~Vi~a~G~~p~  399 (467)
T TIGR01318       330 AREEGVEFLFNVQPVYIECDEDGRVTGVGLVRTALGEPDADGRRRPVPVAGSEFVLPADVVIMAFGFQPH  399 (467)
T ss_pred             HHhcCCEEEecCCcEEEEECCCCeEEEEEEEEEEecccCCCCCccceecCCceEEEECCEEEECCcCCCC
Confidence            567899999988888875322 11   122                    11236899999999998875

This model represents one of three built for the NADPH-dependent or NADH-dependent glutamate synthase (EC 1.4.1.13 and 1.4.1.14, respectively) small subunit and homologs. TIGR01317 describes the small subunit (or equivalent region from longer forms) in eukaryotes, Gram-positive bacteria, and some other lineages, both NADH and NADPH-dependent. TIGR01316 describes a protein of similar length, from Archaea and a number of bacterial lineages, that forms glutamate synthase homotetramers without a large subunit. This model describes both glutatate synthase small subunit and closely related paralogs of unknown function from a number of gamma and alpha subdivision Proteobacteria, including E. coli.

>PF14691 Fer4_20: Dihydroprymidine dehydrogenase domain II, 4Fe-4S cluster; PDB: 2VDC_G 1H7X_C 1H7W_A 1GT8_A 1GTE_B 1GTH_B

Probab=96.84  E-value=6.3e-05  Score=60.12  Aligned_cols=41  Identities=15%  Similarity=-0.025  Sum_probs=29.0

Q ss_pred             ccccccccccccccccC--CCCcccccc-cCCcccccccccccc
Q 012165            3 SVSNSLSFKHGLSLWCP--QSPSLHRIR-HSSAKNFQRRGFVVA   43 (469)
Q Consensus         3 ~~~~~~~~~~~~~~~~~--~~~~~~~~~-~~~~~~~~~~~~~~~   43 (469)
                      ..+||||.++|++|+++  |+..|.|.. .+|++..+.|++.+.
T Consensus        62 ~~~np~p~vcGrvCp~p~~Ce~~C~r~~~~pV~I~~l~r~~~d~  105 (111)
T PF14691_consen   62 REDNPFPAVCGRVCPHPKQCESACRRGKGEPVAIRALERFIADY  105 (111)
T ss_dssp             HHH-TTHHHHHHH--GGGSGGGG-GGGST-S--HHHHHHHHHHH
T ss_pred             HHhCCCcccccCCCCCcchHHHHccCCCCCCCcHHHHHHHHHHH
Confidence            46899999999999999  999999976 888888888876554

>TIGR03329 Phn_aa_oxid putative aminophosphonate oxidoreductase

Probab=96.84  E-value=0.0013  Score=67.43  Aligned_cols=48  Identities=27%  Similarity=0.466  Sum_probs=37.2

Q ss_pred             eHHHHHHcCcEEEcCCeEEEEEeCCCCcEEEEEcCCCCEEeCCEEEEccCCc
Q 012165          236 YEQLYQQNGVKFVKGASIKNLEAGSDGRVAAVKLEDGSTIDADTIVIGIGAK  287 (469)
Q Consensus       236 ~~~~l~~~gV~~~~~~~v~~i~~~~~~~v~~v~~~~g~~i~~D~vi~a~G~~  287 (469)
                      +.+.+++.|++++.++.|.+++..  +. ..|.+.+| ++.+|.||+|+|.-
T Consensus       189 L~~~a~~~Gv~i~~~t~V~~i~~~--~~-~~v~t~~g-~v~A~~VV~Atga~  236 (460)
T TIGR03329       189 LRRVALELGVEIHENTPMTGLEEG--QP-AVVRTPDG-QVTADKVVLALNAW  236 (460)
T ss_pred             HHHHHHHcCCEEECCCeEEEEeeC--Cc-eEEEeCCc-EEECCEEEEccccc
Confidence            445677889999999999999742  22 34677777 69999999999854

This clade of sequences are members of the pfam01266 family of FAD-dependent oxidoreductases. Characterized proteins within this family include glycerol-3-phosphate dehydrogenase (1.1.99.5), sarcosine oxidase beta subunit (1.5.3.1) and a number of deaminating amino acid oxidases (1.4.-.-). These genes have been consistently observed in a genomic context including genes for the import and catabolism of 2-aminoethylphosphonate (AEP). If the substrate of this oxidoreductase is AEP itself, then it is probably acting in the manner of a deaminating oxidase, resulting in the same product (phosphonoacetaldehyde) as the transaminase PhnW (TIGR02326), but releasing ammonia instead of coupling to pyruvate:alanine. Alternatively, it is reasonable to suppose that the various ABC cassette transporters which are also associated with these loci allow the import of phosphonates closely related to AEP which may not be substrates for PhnW.

>PRK07494 2-octaprenyl-6-methoxyphenyl hydroxylase; Provisional

Probab=96.84  E-value=0.0055  Score=61.26  Aligned_cols=43  Identities=26%  Similarity=0.387  Sum_probs=32.8

Q ss_pred             CcEEEcCCeEEEEEeCCCCcEEEEEcCCCCEEeCCEEEEccCCccC
Q 012165          244 GVKFVKGASIKNLEAGSDGRVAAVKLEDGSTIDADTIVIGIGAKPT  289 (469)
Q Consensus       244 gV~~~~~~~v~~i~~~~~~~v~~v~~~~g~~i~~D~vi~a~G~~p~  289 (469)
                      ++. +.++++.+++..++ .+ .+++++|+++.+|+||.|.|....
T Consensus       126 ~~~-~~~~~v~~i~~~~~-~~-~v~~~~g~~~~a~~vI~AdG~~S~  168 (388)
T PRK07494        126 NIT-RFGDEAESVRPRED-EV-TVTLADGTTLSARLVVGADGRNSP  168 (388)
T ss_pred             CcE-EECCeeEEEEEcCC-eE-EEEECCCCEEEEeEEEEecCCCch
Confidence            455 66888888875433 33 477888889999999999998764

>PLN00128 Succinate dehydrogenase [ubiquinone] flavoprotein subunit

Probab=96.83  E-value=0.0014  Score=69.47  Aligned_cols=36  Identities=31%  Similarity=0.356  Sum_probs=32.2

Q ss_pred             CCCcEEEEcCcHHHHHHHHHHHHcCCCCCcEEEEcCCCC
Q 012165           50 ENREFVIVGGGNAAGYAARTFVEHGMADGRLCIVSKEAY   88 (469)
Q Consensus        50 ~~~~vvIIGgG~AGl~aA~~L~~~g~~~~~V~vie~~~~   88 (469)
                      ..+||||||+|.||++||.++++.|.   +|+|||+...
T Consensus        49 ~~~DVlVIG~G~AGl~AAl~Aae~G~---~VilveK~~~   84 (635)
T PLN00128         49 HTYDAVVVGAGGAGLRAAIGLSEHGF---NTACITKLFP   84 (635)
T ss_pred             eecCEEEECccHHHHHHHHHHHhcCC---cEEEEEcCCC
Confidence            45799999999999999999999886   7999999753

>KOG1276 consensus Protoporphyrinogen oxidase [Coenzyme transport and metabolism]

Probab=96.81  E-value=0.0017  Score=63.00  Aligned_cols=40  Identities=20%  Similarity=0.239  Sum_probs=35.7

Q ss_pred             CCCcEEEEcCcHHHHHHHHHHHHcCCCCCcEEEEcCCCCCC
Q 012165           50 ENREFVIVGGGNAAGYAARTFVEHGMADGRLCIVSKEAYAP   90 (469)
Q Consensus        50 ~~~~vvIIGgG~AGl~aA~~L~~~g~~~~~V~vie~~~~~~   90 (469)
                      +..+|+|+|||.+||++|.+|++++. +..|+|+|+.+..+
T Consensus        10 ~~~~vaVvGGGiSGL~aay~L~r~~p-~~~i~l~Ea~~RvG   49 (491)
T KOG1276|consen   10 SGMTVAVVGGGISGLCAAYYLARLGP-DVTITLFEASPRVG   49 (491)
T ss_pred             ecceEEEECCchhHHHHHHHHHhcCC-CceEEEEecCCccc
Confidence            44689999999999999999999986 77899999998775

>PTZ00139 Succinate dehydrogenase [ubiquinone] flavoprotein subunit; Provisional

Probab=96.81  E-value=0.0014  Score=69.44  Aligned_cols=37  Identities=32%  Similarity=0.348  Sum_probs=32.8

Q ss_pred             CCCCcEEEEcCcHHHHHHHHHHHHcCCCCCcEEEEcCCCC
Q 012165           49 NENREFVIVGGGNAAGYAARTFVEHGMADGRLCIVSKEAY   88 (469)
Q Consensus        49 ~~~~~vvIIGgG~AGl~aA~~L~~~g~~~~~V~vie~~~~   88 (469)
                      ...+||||||||.||++||.++++.|.   +|+|+|+...
T Consensus        27 ~~~~DVlVIG~G~AGl~AAi~Aa~~G~---~V~lveK~~~   63 (617)
T PTZ00139         27 DHTYDAVVVGAGGAGLRAALGLVELGY---KTACISKLFP   63 (617)
T ss_pred             ccccCEEEECccHHHHHHHHHHHHcCC---cEEEEeccCC
Confidence            346899999999999999999999886   7999999764

>PF13434 K_oxygenase: L-lysine 6-monooxygenase (NADPH-requiring); PDB: 3S61_B 3S5W_B

Probab=96.81  E-value=0.00063  Score=66.45  Aligned_cols=41  Identities=17%  Similarity=0.338  Sum_probs=30.8

Q ss_pred             CCCCCcEEEEcCcHHHHHHHHHHHHcCCCCCcEEEEcCCCCC
Q 012165           48 ANENREFVIVGGGNAAGYAARTFVEHGMADGRLCIVSKEAYA   89 (469)
Q Consensus        48 ~~~~~~vvIIGgG~AGl~aA~~L~~~g~~~~~V~vie~~~~~   89 (469)
                      ....++|+|||||.++...+..|.+.+. ..+|+++.+.+.+
T Consensus       187 ~~~~~~V~VVGgGQSAAEi~~~L~~~~~-~~~V~~i~R~~~~  227 (341)
T PF13434_consen  187 SLAGKRVAVVGGGQSAAEIFLDLLRRGP-EAKVTWISRSPGF  227 (341)
T ss_dssp             ----EEEEEE-SSHHHHHHHHHHHHH-T-TEEEEEEESSSS-
T ss_pred             ccCCCeEEEECCcHhHHHHHHHHHhCCC-CcEEEEEECCCcc
Confidence            4566899999999999999999999874 5789999988754

>PRK08626 fumarate reductase flavoprotein subunit; Provisional

Probab=96.81  E-value=0.0013  Score=70.02  Aligned_cols=38  Identities=16%  Similarity=0.151  Sum_probs=33.0

Q ss_pred             CCCCCcEEEEcCcHHHHHHHHHHHHcCCCCCcEEEEcCCCC
Q 012165           48 ANENREFVIVGGGNAAGYAARTFVEHGMADGRLCIVSKEAY   88 (469)
Q Consensus        48 ~~~~~~vvIIGgG~AGl~aA~~L~~~g~~~~~V~vie~~~~   88 (469)
                      ....+||||||||.||++||.++++.|.   +|+|||+.+.
T Consensus         2 ~~~~~DVlVIG~G~AGl~AAi~Aae~G~---~VivleK~~~   39 (657)
T PRK08626          2 KIIYTDALVIGAGLAGLRVAIAAAQRGL---DTIVLSLVPA   39 (657)
T ss_pred             CceeccEEEECccHHHHHHHHHHHHcCC---CEEEEeCCCC
Confidence            3456899999999999999999999987   7999998653

>PF01946 Thi4: Thi4 family; PDB: 1RP0_A 3FPZ_B 3JSK_K

Probab=96.80  E-value=0.0067  Score=54.07  Aligned_cols=85  Identities=24%  Similarity=0.275  Sum_probs=60.9

Q ss_pred             cCCeEEEEcCChHHHHHHHHHHhCCCeEe---------------------------------------------------
Q 012165          206 KAKKVVVVGGGYIGMEVAAAAVGWKLDTT---------------------------------------------------  234 (469)
Q Consensus       206 ~~~~vvVvG~G~~g~e~A~~l~~~g~~v~---------------------------------------------------  234 (469)
                      ....++|||+|++|+-+|.+|++.|.++.                                                   
T Consensus        16 ~~~DV~IVGaGpaGl~aA~~La~~g~kV~v~E~~~~~GGg~~~Gg~lf~~iVVq~~a~~iL~elgi~y~~~~~g~~v~d~   95 (230)
T PF01946_consen   16 LEYDVAIVGAGPAGLTAAYYLAKAGLKVAVIERKLSPGGGMWGGGMLFNKIVVQEEADEILDELGIPYEEYGDGYYVADS   95 (230)
T ss_dssp             TEESEEEE--SHHHHHHHHHHHHHTS-EEEEESSSS-BTTTTS-CTT---EEEETTTHHHHHHHT---EE-SSEEEES-H
T ss_pred             ccCCEEEECCChhHHHHHHHHHHCCCeEEEEecCCCCCccccccccccchhhhhhhHHHHHHhCCceeEEeCCeEEEEcH
Confidence            34689999999999999999999998886                                                   


Q ss_pred             -----eeHHHHHHcCcEEEcCCeEEEEEeCCCCcEEEEEcC------C-----CCEEeCCEEEEccCCccCC
Q 012165          235 -----RYEQLYQQNGVKFVKGASIKNLEAGSDGRVAAVKLE------D-----GSTIDADTIVIGIGAKPTV  290 (469)
Q Consensus       235 -----~~~~~l~~~gV~~~~~~~v~~i~~~~~~~v~~v~~~------~-----g~~i~~D~vi~a~G~~p~~  290 (469)
                           .+....-+.|+++.....++++--.+++++.++...      .     --.+.+..||-|||...+.
T Consensus        96 ~~~~s~L~s~a~~aGakifn~~~vEDvi~r~~~rV~GvViNWt~V~~~glHvDPl~i~ak~ViDaTGHda~v  167 (230)
T PF01946_consen   96 VEFTSTLASKAIDAGAKIFNLTSVEDVIVREDDRVAGVVINWTPVEMAGLHVDPLTIRAKVVIDATGHDAEV  167 (230)
T ss_dssp             HHHHHHHHHHHHTTTEEEEETEEEEEEEEECSCEEEEEEEEEHHHHTT--T-B-EEEEESEEEE---SSSSS
T ss_pred             HHHHHHHHHHHhcCCCEEEeeeeeeeeEEEcCCeEEEEEEEehHHhHhhcCCCcceEEEeEEEeCCCCchHH
Confidence                 222333358999999999999875545788887763      2     2378999999999998754

>PRK08275 putative oxidoreductase; Provisional

Probab=96.80  E-value=0.0013  Score=68.88  Aligned_cols=38  Identities=24%  Similarity=0.348  Sum_probs=32.7

Q ss_pred             CCCcEEEEcCcHHHHHHHHHHHHcCCCCCcEEEEcCCCC
Q 012165           50 ENREFVIVGGGNAAGYAARTFVEHGMADGRLCIVSKEAY   88 (469)
Q Consensus        50 ~~~~vvIIGgG~AGl~aA~~L~~~g~~~~~V~vie~~~~   88 (469)
                      ..+||||||+|.||++||.++++.+. ..+|+|+|+.+.
T Consensus         8 ~~~DVlVIG~G~AGl~AAi~aa~~g~-g~~VilveK~~~   45 (554)
T PRK08275          8 VETDILVIGGGTAGPMAAIKAKERNP-ALRVLLLEKANV   45 (554)
T ss_pred             EecCEEEECcCHHHHHHHHHHHHhCC-CCeEEEEeCCCC
Confidence            45799999999999999999998753 448999999864

>PRK05732 2-octaprenyl-6-methoxyphenyl hydroxylase; Validated

Probab=96.79  E-value=0.0067  Score=60.77  Aligned_cols=52  Identities=31%  Similarity=0.466  Sum_probs=38.9

Q ss_pred             cCcEEEcCCeEEEEEeCCCCcEEEEEcCCCCEEeCCEEEEccCCccCCchhhhcCC
Q 012165          243 NGVKFVKGASIKNLEAGSDGRVAAVKLEDGSTIDADTIVIGIGAKPTVSPFERVGL  298 (469)
Q Consensus       243 ~gV~~~~~~~v~~i~~~~~~~v~~v~~~~g~~i~~D~vi~a~G~~p~~~~~~~~gl  298 (469)
                      .|++++.+++++++...+ +.+ .+.+++|..+.+|.||.|.|....  +.+.+++
T Consensus       126 ~g~~~~~~~~v~~i~~~~-~~~-~v~~~~g~~~~a~~vI~AdG~~S~--vr~~~~~  177 (395)
T PRK05732        126 PGVTLHCPARVANVERTQ-GSV-RVTLDDGETLTGRLLVAADGSHSA--LREALGI  177 (395)
T ss_pred             CCcEEEcCCEEEEEEEcC-CeE-EEEECCCCEEEeCEEEEecCCChh--hHHhhCC
Confidence            478999999999987543 333 477888888999999999998764  3344443

>PRK07803 sdhA succinate dehydrogenase flavoprotein subunit; Reviewed

Probab=96.79  E-value=0.0015  Score=69.35  Aligned_cols=36  Identities=31%  Similarity=0.512  Sum_probs=32.4

Q ss_pred             CCCcEEEEcCcHHHHHHHHHHHHcCCCCCcEEEEcCCCC
Q 012165           50 ENREFVIVGGGNAAGYAARTFVEHGMADGRLCIVSKEAY   88 (469)
Q Consensus        50 ~~~~vvIIGgG~AGl~aA~~L~~~g~~~~~V~vie~~~~   88 (469)
                      ..+||||||+|.||++||..+++.|.   +|+|||+.+.
T Consensus         7 ~~~DVvVIG~G~AGl~AAl~Aae~G~---~V~lieK~~~   42 (626)
T PRK07803          7 HSYDVVVIGAGGAGLRAAIEARERGL---RVAVVCKSLF   42 (626)
T ss_pred             eeecEEEECcCHHHHHHHHHHHHCCC---CEEEEeccCC
Confidence            45799999999999999999999986   7999999754

>PF00732 GMC_oxred_N: GMC oxidoreductase; InterPro: IPR000172 The glucose-methanol-choline (GMC) oxidoreductases are FAD flavoproteins oxidoreductases [, ]

Probab=96.78  E-value=0.001  Score=63.79  Aligned_cols=64  Identities=19%  Similarity=0.343  Sum_probs=45.9

Q ss_pred             eeHHHHHHcCcEEEcCCeEEEEEeC-CCCcEEEEEcCC--CC----EEeCCEEEEccCCccCCchhhhcCC
Q 012165          235 RYEQLYQQNGVKFVKGASIKNLEAG-SDGRVAAVKLED--GS----TIDADTIVIGIGAKPTVSPFERVGL  298 (469)
Q Consensus       235 ~~~~~l~~~gV~~~~~~~v~~i~~~-~~~~v~~v~~~~--g~----~i~~D~vi~a~G~~p~~~~~~~~gl  298 (469)
                      .+...++..|+++++++.|++|..+ +++++.+|++.+  +.    .+.++.||+|.|.--...+|..+|+
T Consensus       198 ~L~~a~~~~n~~l~~~~~V~~i~~~~~~~~a~gV~~~~~~~~~~~~~~~ak~VIlaAGai~Tp~LLl~SGi  268 (296)
T PF00732_consen  198 YLPPALKRPNLTLLTNARVTRIIFDGDGGRATGVEYVDNDGGVQRRIVAAKEVILAAGAIGTPRLLLRSGI  268 (296)
T ss_dssp             HHHHHTTTTTEEEEESEEEEEEEEETTSTEEEEEEEEETTTSEEEEEEEEEEEEE-SHHHHHHHHHHHTTE
T ss_pred             ccchhhccCCccEEcCcEEEEEeeeccccceeeeeeeecCCcceeeeccceeEEeccCCCCChhhhccccc
Confidence            3455555569999999999999542 466777776643  33    5678999999997655567777777

These enzymes include a variety of proteins; choline dehydrogenase (CHD), methanol oxidase (MOX) and cellobiose dehydrogenase (1.1.99.18 from EC) [] which share a number of regions of sequence similarities. One of these regions, located in the N-terminal section, corresponds to the FAD ADP- binding domain. The function of the other conserved domains is not yet known.; GO: 0016614 oxidoreductase activity, acting on CH-OH group of donors, 0050660 flavin adenine dinucleotide binding, 0055114 oxidation-reduction process; PDB: 3Q9T_B 1B4V_A 3GYJ_A 1CBO_A 1B8S_A 1N4V_A 1N4W_A 3CNJ_A 1IJH_A 2GEW_A ....

>PRK12834 putative FAD-binding dehydrogenase; Reviewed

Probab=96.78  E-value=0.0016  Score=68.27  Aligned_cols=35  Identities=26%  Similarity=0.461  Sum_probs=32.5

Q ss_pred             CCCcEEEEcCcHHHHHHHHHHHHcCCCCCcEEEEcCCC
Q 012165           50 ENREFVIVGGGNAAGYAARTFVEHGMADGRLCIVSKEA   87 (469)
Q Consensus        50 ~~~~vvIIGgG~AGl~aA~~L~~~g~~~~~V~vie~~~   87 (469)
                      ..+||||||+|.|||+||.++++.|.   +|+|||+.+
T Consensus         3 ~~~DVvVVG~G~AGl~AAl~Aa~~G~---~VivlEK~~   37 (549)
T PRK12834          3 MDADVIVVGAGLAGLVAAAELADAGK---RVLLLDQEN   37 (549)
T ss_pred             ccCCEEEECcCHHHHHHHHHHHHCCC---eEEEEeCCC
Confidence            46899999999999999999999987   799999988

>TIGR02732 zeta_caro_desat carotene 7,8-desaturase

Probab=96.76  E-value=0.0016  Score=66.86  Aligned_cols=52  Identities=21%  Similarity=0.323  Sum_probs=40.6

Q ss_pred             eHHHHHHcCcEEEcCCeEEEEEeCC--CC--cEEEEEcCCC---CEEeCCEEEEccCCc
Q 012165          236 YEQLYQQNGVKFVKGASIKNLEAGS--DG--RVAAVKLEDG---STIDADTIVIGIGAK  287 (469)
Q Consensus       236 ~~~~l~~~gV~~~~~~~v~~i~~~~--~~--~v~~v~~~~g---~~i~~D~vi~a~G~~  287 (469)
                      +.+.+++.|+++++++.|++|+.++  ++  ++.++.+.+|   +++++|.||+|++..
T Consensus       225 l~~~L~~~Gg~i~~~~~V~~I~~~~~~~~~~~v~~v~~~~g~~~~~~~aD~VVlA~p~~  283 (474)
T TIGR02732       225 ILEYIEARGGKFHLRHKVREIKYEKSSDGSTRVTGLIMSKPEGKKVIKADAYVAACDVP  283 (474)
T ss_pred             HHHHHHHCCCEEECCCEEEEEEEecCCCCceeEEEEEEecCCcceEEECCEEEECCChH
Confidence            5678888999999999999998643  23  3666777654   469999999999854

Carotene 7,8-desaturase, also called zeta-carotene desaturase, catalyzes multiple steps in the pathway from geranylgeranyl-PP to all-trans-lycopene in plants and cyanobacteria. A similar enzyme and pathway is found in the green sulfur bacterium Chlorobium tepidum.

>TIGR00137 gid_trmFO tRNA:m(5)U-54 methyltransferase

Probab=96.75  E-value=0.0017  Score=64.87  Aligned_cols=34  Identities=21%  Similarity=0.332  Sum_probs=30.9

Q ss_pred             CcEEEEcCcHHHHHHHHHHHHcCCCCCcEEEEcCCCC
Q 012165           52 REFVIVGGGNAAGYAARTFVEHGMADGRLCIVSKEAY   88 (469)
Q Consensus        52 ~~vvIIGgG~AGl~aA~~L~~~g~~~~~V~vie~~~~   88 (469)
                      .+|+|||||.+|+.+|..|++.|.   +|+|+|..+.
T Consensus         1 ~~VvVIGgGlAGleaA~~LAr~G~---~V~LiE~rp~   34 (433)
T TIGR00137         1 TPVHVIGGGLAGSEAAWQLAQAGV---PVILYEMRPE   34 (433)
T ss_pred             CCEEEECCCHHHHHHHHHHHhCCC---cEEEEecccc
Confidence            379999999999999999999998   7999997654

This model represents an orthologous set of proteins present in relatively few bacteria but very tightly conserved where it occurs. It is closely related to gidA (glucose-inhibited division protein A), which appears to be present in all complete eubacterial genomes so far and in Saccharomyces cerevisiae. It was designated gid but is now recognized as a tRNA:m(5)U-54 methyltransferase and is now designated trmFO.

>PRK08243 4-hydroxybenzoate 3-monooxygenase; Validated

Probab=96.75  E-value=0.0086  Score=60.00  Aligned_cols=82  Identities=21%  Similarity=0.154  Sum_probs=61.3

Q ss_pred             CeEEEEcCChHHHHHHHHHHhCCCeEe-----------------------------------------------------
Q 012165          208 KKVVVVGGGYIGMEVAAAAVGWKLDTT-----------------------------------------------------  234 (469)
Q Consensus       208 ~~vvVvG~G~~g~e~A~~l~~~g~~v~-----------------------------------------------------  234 (469)
                      .+|+|||+|+.|+-+|..|++.|.++.                                                     
T Consensus         3 ~dV~IvGaGpaGl~~A~~L~~~G~~v~v~E~~~~~~~~~~~~a~~l~~~~~~~l~~lGl~~~l~~~~~~~~~~~~~~~g~   82 (392)
T PRK08243          3 TQVAIIGAGPAGLLLGQLLHLAGIDSVVLERRSREYVEGRIRAGVLEQGTVDLLREAGVGERMDREGLVHDGIELRFDGR   82 (392)
T ss_pred             ceEEEECCCHHHHHHHHHHHhcCCCEEEEEcCCccccccccceeEECHhHHHHHHHcCChHHHHhcCCccCcEEEEECCE
Confidence            479999999999999999999988775                                                     


Q ss_pred             -------------------------eeHHHHHHcCcEEEcCCeEEEEEeCCCCcEEEEEc-CCCC--EEeCCEEEEccCC
Q 012165          235 -------------------------RYEQLYQQNGVKFVKGASIKNLEAGSDGRVAAVKL-EDGS--TIDADTIVIGIGA  286 (469)
Q Consensus       235 -------------------------~~~~~l~~~gV~~~~~~~v~~i~~~~~~~v~~v~~-~~g~--~i~~D~vi~a~G~  286 (469)
                                               .+.+...+.|+++++++++++++..++..+ .|.+ .+|+  ++.+|+||-|-|.
T Consensus        83 ~~~~~~~~~~~~~~~~~~~~~~l~~~Ll~~a~~~gv~v~~~~~v~~i~~~~~~~~-~V~~~~~G~~~~i~ad~vVgADG~  161 (392)
T PRK08243         83 RHRIDLTELTGGRAVTVYGQTEVTRDLMAARLAAGGPIRFEASDVALHDFDSDRP-YVTYEKDGEEHRLDCDFIAGCDGF  161 (392)
T ss_pred             EEEeccccccCCceEEEeCcHHHHHHHHHHHHhCCCeEEEeeeEEEEEecCCCce-EEEEEcCCeEEEEEeCEEEECCCC
Confidence                                     112222557999999999998875222222 4555 4664  6899999999998


Q ss_pred             ccCC
Q 012165          287 KPTV  290 (469)
Q Consensus       287 ~p~~  290 (469)
                      ...+
T Consensus       162 ~S~v  165 (392)
T PRK08243        162 HGVS  165 (392)
T ss_pred             CCch
Confidence            7653

>TIGR01320 mal_quin_oxido malate:quinone-oxidoreductase

Probab=96.74  E-value=0.0015  Score=67.07  Aligned_cols=63  Identities=24%  Similarity=0.421  Sum_probs=43.4

Q ss_pred             eeHHHHHHcCcEEEcCCeEEEEEeCCCCcEEEEE---cCCC--CEEeCCEEEEccCCccCCchhhhcCCc
Q 012165          235 RYEQLYQQNGVKFVKGASIKNLEAGSDGRVAAVK---LEDG--STIDADTIVIGIGAKPTVSPFERVGLN  299 (469)
Q Consensus       235 ~~~~~l~~~gV~~~~~~~v~~i~~~~~~~v~~v~---~~~g--~~i~~D~vi~a~G~~p~~~~~~~~gl~  299 (469)
                      .+.+.+++.|++++.+++|++++..+++.+ .+.   +.+|  .++.+|.||+|+|.... .+++.+|+.
T Consensus       183 aL~~~a~~~Gv~i~~~t~V~~i~~~~~~~v-~v~~~~~~~g~~~~i~A~~VV~AAG~~s~-~La~~~Gi~  250 (483)
T TIGR01320       183 QLLGYLVQNGTTIRFGHEVRNLKRQSDGSW-TVTVKNTRTGGKRTLNTRFVFVGAGGGAL-PLLQKSGIP  250 (483)
T ss_pred             HHHHHHHhCCCEEEeCCEEEEEEEcCCCeE-EEEEeeccCCceEEEECCEEEECCCcchH-HHHHHcCCC
Confidence            344566778999999999999986544433 232   2334  36899999999997653 455555554

This membrane-associated enzyme is an alternative to the better-known NAD-dependent malate dehydrogenase as part of the TCA cycle. The reduction of a quinone rather than NAD+ makes the reaction essentially irreversible in the direction of malate oxidation to oxaloacetate. Both forms of malate dehydrogenase are active in E. coli; disruption of this form causes less phenotypic change. In some bacteria, this form is the only or the more important malate dehydrogenase.

>KOG2820 consensus FAD-dependent oxidoreductase [General function prediction only]

Probab=96.73  E-value=0.0086  Score=56.53  Aligned_cols=59  Identities=24%  Similarity=0.362  Sum_probs=47.7

Q ss_pred             eeHHHHHHcCcEEEcCCeEEEEEe-CCCCcEEEEEcCCCCEEeCCEEEEccCCccCCchhh
Q 012165          235 RYEQLYQQNGVKFVKGASIKNLEA-GSDGRVAAVKLEDGSTIDADTIVIGIGAKPTVSPFE  294 (469)
Q Consensus       235 ~~~~~l~~~gV~~~~~~~v~~i~~-~~~~~v~~v~~~~g~~i~~D~vi~a~G~~p~~~~~~  294 (469)
                      .++..+++.|+.++.+..+..+.. ++++....|.+.+|..+.++.+|+++|.--| .+|.
T Consensus       158 ~~~~~~~~~G~i~~dg~~v~~~~~~~e~~~~v~V~Tt~gs~Y~akkiI~t~GaWi~-klL~  217 (399)
T KOG2820|consen  158 ALQDKARELGVIFRDGEKVKFIKFVDEEGNHVSVQTTDGSIYHAKKIIFTVGAWIN-KLLP  217 (399)
T ss_pred             HHHHHHHHcCeEEecCcceeeEeeccCCCceeEEEeccCCeeecceEEEEecHHHH-hhcC
Confidence            567888899999999998888763 3455666899999999999999999997655 3443

>PRK11101 glpA sn-glycerol-3-phosphate dehydrogenase subunit A; Provisional

Probab=96.72  E-value=0.0086  Score=62.66  Aligned_cols=52  Identities=17%  Similarity=0.221  Sum_probs=39.2

Q ss_pred             HHHHHHcCcEEEcCCeEEEEEeCCCCcEEEEEcC---CC--CEEeCCEEEEccCCccC
Q 012165          237 EQLYQQNGVKFVKGASIKNLEAGSDGRVAAVKLE---DG--STIDADTIVIGIGAKPT  289 (469)
Q Consensus       237 ~~~l~~~gV~~~~~~~v~~i~~~~~~~v~~v~~~---~g--~~i~~D~vi~a~G~~p~  289 (469)
                      ....+++|++++.+++|+.+... ++++.+|.+.   ++  .++.+|.||.|+|.-..
T Consensus       156 ~~~A~~~Ga~i~~~t~V~~i~~~-~~~v~gv~v~d~~~g~~~~i~A~~VVnAaG~wa~  212 (546)
T PRK11101        156 MLDAKEHGAQILTYHEVTGLIRE-GDTVCGVRVRDHLTGETQEIHAPVVVNAAGIWGQ  212 (546)
T ss_pred             HHHHHhCCCEEEeccEEEEEEEc-CCeEEEEEEEEcCCCcEEEEECCEEEECCChhHH
Confidence            34557889999999999999864 4566566653   23  37999999999997643

>TIGR03315 Se_ygfK putative selenate reductase, YgfK subunit

Probab=96.71  E-value=0.0033  Score=69.28  Aligned_cols=71  Identities=24%  Similarity=0.274  Sum_probs=51.9

Q ss_pred             CCeEEEEcCChHHHHHHHHHHhCCCeEee---------------------------eHHHHHHcCcEEEcCCeEEEEEeC
Q 012165          207 AKKVVVVGGGYIGMEVAAAAVGWKLDTTR---------------------------YEQLYQQNGVKFVKGASIKNLEAG  259 (469)
Q Consensus       207 ~~~vvVvG~G~~g~e~A~~l~~~g~~v~~---------------------------~~~~l~~~gV~~~~~~~v~~i~~~  259 (469)
                      +++|+|||||+.|+.+|..|++.|.+|+.                           ..+.+.+.||+++++...      
T Consensus       537 ~kkVaIIGGGPAGLSAA~~LAr~G~~VTV~Ek~~~lGG~l~~~IP~~rlp~e~l~~~ie~l~~~GVe~~~g~~~------  610 (1012)
T TIGR03315       537 AHKVAVIGAGPAGLSAGYFLARAGHPVTVFEKKEKPGGVVKNIIPEFRISAESIQKDIELVKFHGVEFKYGCSP------  610 (1012)
T ss_pred             CCcEEEECCCHHHHHHHHHHHHCCCeEEEEecccccCceeeecccccCCCHHHHHHHHHHHHhcCcEEEEeccc------
Confidence            47899999999999999999999999871                           123455678888776321      


Q ss_pred             CCCcEEEEEcCCCCEEeCCEEEEccCCccC
Q 012165          260 SDGRVAAVKLEDGSTIDADTIVIGIGAKPT  289 (469)
Q Consensus       260 ~~~~v~~v~~~~g~~i~~D~vi~a~G~~p~  289 (469)
                            .+.+.+.+...+|.||+|+|..+.
T Consensus       611 ------d~~ve~l~~~gYDaVIIATGA~~~  634 (1012)
T TIGR03315       611 ------DLTVAELKNQGYKYVILAIGAWKH  634 (1012)
T ss_pred             ------ceEhhhhhcccccEEEECCCCCCC
Confidence                  112233344669999999999754

Members of this protein family are YgfK, predicted to be one subunit of a three-subunit, molybdopterin-containing selenate reductase. This enzyme is found, typically, in genomic regions associated with xanthine dehydrogenase homologs predicted to belong to the selenium-dependent molybdenum hydroxylases (SDMH). Therefore, the selenate reductase is suggested to play a role in furnishing selenide for SelD, the selenophosphate synthase.

>COG0562 Glf UDP-galactopyranose mutase [Cell envelope biogenesis, outer membrane]

Probab=96.70  E-value=0.0024  Score=59.73  Aligned_cols=38  Identities=26%  Similarity=0.312  Sum_probs=34.2

Q ss_pred             CCcEEEEcCcHHHHHHHHHHHHcCCCCCcEEEEcCCCCCCC
Q 012165           51 NREFVIVGGGNAAGYAARTFVEHGMADGRLCIVSKEAYAPY   91 (469)
Q Consensus        51 ~~~vvIIGgG~AGl~aA~~L~~~g~~~~~V~vie~~~~~~~   91 (469)
                      ++|++|||+|.+|+..|..|+++|.   +|.|||+.++.+.
T Consensus         1 ~fd~lIVGaGlsG~V~A~~a~~~gk---~VLIvekR~HIGG   38 (374)
T COG0562           1 MFDYLIVGAGLSGAVIAEVAAQLGK---RVLIVEKRNHIGG   38 (374)
T ss_pred             CCcEEEECCchhHHHHHHHHHHcCC---EEEEEeccccCCC
Confidence            4799999999999999999999887   7999999988753

>PLN02487 zeta-carotene desaturase

Probab=96.70  E-value=0.0026  Score=66.34  Aligned_cols=53  Identities=17%  Similarity=0.251  Sum_probs=41.8

Q ss_pred             eeHHHHHHcCcEEEcCCeEEEEEeCC--CC--cEEEEEc---CCCCEEeCCEEEEccCCc
Q 012165          235 RYEQLYQQNGVKFVKGASIKNLEAGS--DG--RVAAVKL---EDGSTIDADTIVIGIGAK  287 (469)
Q Consensus       235 ~~~~~l~~~gV~~~~~~~v~~i~~~~--~~--~v~~v~~---~~g~~i~~D~vi~a~G~~  287 (469)
                      .+.+.++++|.++++++.|++|+.+.  ++  ++.++.+   .+++.+++|.||++++..
T Consensus       300 pl~~~L~~~Gg~V~l~~~V~~I~~~~~~~g~~~v~gv~~~~~~~~~~~~aD~VV~A~p~~  359 (569)
T PLN02487        300 PIAKYITDRGGRFHLRWGCREILYDKSPDGETYVTGLKVSKATEKEIVKADAYVAACDVP  359 (569)
T ss_pred             HHHHHHHHcCCEEEeCCceEEEEEecCCCCceeEEEEEEecCCCceEEECCEEEECCCHH
Confidence            45678899999999999999998652  33  3677887   344579999999999964

>COG1251 NirB NAD(P)H-nitrite reductase [Energy production and conversion]

Probab=96.69  E-value=0.0074  Score=62.73  Aligned_cols=108  Identities=25%  Similarity=0.495  Sum_probs=77.5

Q ss_pred             CCeEEEEcCChHHHHHHHHHHhCC---CeEe------------------------------eeHHHHHHcCcEEEcCCeE
Q 012165          207 AKKVVVVGGGYIGMEVAAAAVGWK---LDTT------------------------------RYEQLYQQNGVKFVKGASI  253 (469)
Q Consensus       207 ~~~vvVvG~G~~g~e~A~~l~~~g---~~v~------------------------------~~~~~l~~~gV~~~~~~~v  253 (469)
                      ..+++|||.|..|..+...+.+..   .+++                              .-.++.+++||+++.+..+
T Consensus         3 k~klvvvGnGmag~r~iEell~~~~~~~~iTvfg~Ep~~nY~Ri~Ls~vl~~~~~~edi~l~~~dwy~~~~i~L~~~~~v   82 (793)
T COG1251           3 KQKLVIIGNGMAGHRTIEELLESAPDLYDITVFGEEPRPNYNRILLSSVLAGEKTAEDISLNRNDWYEENGITLYTGEKV   82 (793)
T ss_pred             ceeEEEEecccchhhHHHHHHhcCcccceEEEeccCCCccccceeeccccCCCccHHHHhccchhhHHHcCcEEEcCCee
Confidence            467999999999999888887743   2232                              3357889999999999999


Q ss_pred             EEEEeCCCCcEEEEEcCCCCEEeCCEEEEccCCccCCchhhhcCCcccCCCEEeCCCCCCCCCceEEeccccc
Q 012165          254 KNLEAGSDGRVAAVKLEDGSTIDADTIVIGIGAKPTVSPFERVGLNSSVGGIQVDGQFRTRMPGIFAIGDVAA  326 (469)
Q Consensus       254 ~~i~~~~~~~v~~v~~~~g~~i~~D~vi~a~G~~p~~~~~~~~gl~~~~g~i~Vd~~~~t~~~~Vfa~GD~a~  326 (469)
                      ..|...  .+  .|..++|.++.+|-+|+|||..|....+.+..+.    ++.+   +|| ..++++++|++.
T Consensus        83 ~~idr~--~k--~V~t~~g~~~~YDkLilATGS~pfi~PiPG~~~~----~v~~---~R~-i~D~~am~~~ar  143 (793)
T COG1251          83 IQIDRA--NK--VVTTDAGRTVSYDKLIIATGSYPFILPIPGSDLP----GVFV---YRT-IDDVEAMLDCAR  143 (793)
T ss_pred             EEeccC--cc--eEEccCCcEeecceeEEecCccccccCCCCCCCC----CeeE---Eec-HHHHHHHHHHHh
Confidence            999853  33  4788999999999999999999976544433221    2222   222 356666666644

>PRK12769 putative oxidoreductase Fe-S binding subunit; Reviewed

Probab=96.67  E-value=0.012  Score=63.14  Aligned_cols=95  Identities=18%  Similarity=0.330  Sum_probs=63.7

Q ss_pred             CCCcEEEEcCcHHHHHHHHHHHHcCCCCCcEEEEcCCCCCCCCCCCCcccccCCCCCCCCCCCCCccccCCCCCCCCHhH
Q 012165           50 ENREFVIVGGGNAAGYAARTFVEHGMADGRLCIVSKEAYAPYERPALTKGYLFPLDKKPARLPGFHTCVGSGGERQTPEW  129 (469)
Q Consensus        50 ~~~~vvIIGgG~AGl~aA~~L~~~g~~~~~V~vie~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  129 (469)
                      ..++|+|||||..|+-+|..+.+.|..  +|+++...+...+  |..                           ....+.
T Consensus       467 ~gk~VvVIGgG~~a~d~A~~a~r~ga~--~Vt~i~~~~~~~~--~~~---------------------------~~e~~~  515 (654)
T PRK12769        467 AGLNVVVLGGGDTAMDCVRTALRHGAS--NVTCAYRRDEANM--PGS---------------------------KKEVKN  515 (654)
T ss_pred             CCCeEEEECCcHHHHHHHHHHHHcCCC--eEEEeEecCCCCC--CCC---------------------------HHHHHH
Confidence            357899999999999999999998742  6888876543211  000                           011244


Q ss_pred             HHHCCcEEEeCCcEEEEeCC-CcE---EEe---------CCC-----------eEEEeccEEeccCCCCC
Q 012165          130 YKEKGIEMIYQDPVTSIDIE-KQT---LIT---------NSG-----------KLLKYGSLIVATGCTAS  175 (469)
Q Consensus       130 ~~~~~i~~~~~~~v~~id~~-~~~---v~~---------~~g-----------~~~~yd~lVlAtG~~~~  175 (469)
                      +++.|++++++..+.++..+ +..   |.+         .+|           .++++|.||+|+|..|.
T Consensus       516 ~~~~Gv~~~~~~~~~~i~~~~~g~v~~v~~~~~~~~~~~~~G~~~~~~~~g~~~~i~~D~Vi~AiG~~p~  585 (654)
T PRK12769        516 AREEGANFEFNVQPVALELNEQGHVCGIRFLRTRLGEPDAQGRRRPVPIPGSEFVMPADAVIMAFGFNPH  585 (654)
T ss_pred             HHHcCCeEEeccCcEEEEECCCCeEEEEEEEEEEecCcCCCCCCcceeCCCceEEEECCEEEECccCCCC
Confidence            67789999888777777432 221   222         112           25999999999998775

>PRK12837 3-ketosteroid-delta-1-dehydrogenase; Provisional

Probab=96.65  E-value=0.0023  Score=66.48  Aligned_cols=37  Identities=19%  Similarity=0.296  Sum_probs=32.8

Q ss_pred             CCCcEEEEcCcHHHHHHHHHHHHcCCCCCcEEEEcCCCCCC
Q 012165           50 ENREFVIVGGGNAAGYAARTFVEHGMADGRLCIVSKEAYAP   90 (469)
Q Consensus        50 ~~~~vvIIGgG~AGl~aA~~L~~~g~~~~~V~vie~~~~~~   90 (469)
                      ..+||||||+| ||++||.++++.|.   +|+|||+.+...
T Consensus         6 ~~~DVvVVG~G-aGl~aA~~aa~~G~---~V~vlEk~~~~G   42 (513)
T PRK12837          6 EEVDVLVAGSG-GGVAGAYTAAREGL---SVALVEATDKFG   42 (513)
T ss_pred             CccCEEEECch-HHHHHHHHHHHCCC---cEEEEecCCCCC
Confidence            36799999999 99999999999987   799999987643

>KOG2614 consensus Kynurenine 3-monooxygenase and related flavoprotein monooxygenases [Energy production and conversion; General function prediction only]

Probab=96.65  E-value=0.0024  Score=61.96  Aligned_cols=35  Identities=23%  Similarity=0.372  Sum_probs=31.7

Q ss_pred             CCcEEEEcCcHHHHHHHHHHHHcCCCCCcEEEEcCCCC
Q 012165           51 NREFVIVGGGNAAGYAARTFVEHGMADGRLCIVSKEAY   88 (469)
Q Consensus        51 ~~~vvIIGgG~AGl~aA~~L~~~g~~~~~V~vie~~~~   88 (469)
                      +.+|+|||||.+|+++|..|.++|+   +++|+|+...
T Consensus         2 ~~~VvIvGgGI~Gla~A~~l~r~G~---~v~VlE~~e~   36 (420)
T KOG2614|consen    2 EPKVVIVGGGIVGLATALALHRKGI---DVVVLESRED   36 (420)
T ss_pred             CCcEEEECCcHHHHHHHHHHHHcCC---eEEEEeeccc
Confidence            4689999999999999999999999   7999998544

>TIGR01813 flavo_cyto_c flavocytochrome c

Probab=96.64  E-value=0.009  Score=60.85  Aligned_cols=59  Identities=14%  Similarity=0.250  Sum_probs=42.2

Q ss_pred             HHHHHHcCcEEEcCCeEEEEEeCCCCcEEEEEcC--CCC--EEeCCEEEEccCC-ccCCchhhh
Q 012165          237 EQLYQQNGVKFVKGASIKNLEAGSDGRVAAVKLE--DGS--TIDADTIVIGIGA-KPTVSPFER  295 (469)
Q Consensus       237 ~~~l~~~gV~~~~~~~v~~i~~~~~~~v~~v~~~--~g~--~i~~D~vi~a~G~-~p~~~~~~~  295 (469)
                      .+.+++.|+++++++.++++..++++++.++...  +++  .+.++.||+|+|- ..|.++++.
T Consensus       137 ~~~~~~~gv~i~~~~~v~~l~~~~~g~v~Gv~~~~~~g~~~~~~a~~VVlAtGg~~~n~~m~~~  200 (439)
T TIGR01813       137 YKKAKKEGIDTRLNSKVEDLIQDDQGTVVGVVVKGKGKGIYIKAAKAVVLATGGFGSNKEMIAK  200 (439)
T ss_pred             HHHHHHcCCEEEeCCEeeEeEECCCCcEEEEEEEeCCCeEEEEecceEEEecCCCCCCHHHHHH
Confidence            3445678999999999999987656777666553  343  4789999999994 455444443

This model describes a family of redox proteins related to the succinate dehydrogenases and fumarate reductases of E. coli, mitochondria, and other well-characterized systems. A member of this family from Shewanella frigidimarina NCIMB400 is characterized as a water-soluble periplasmic protein with four heme groups, a non-covalently bound FAD, and essentially unidirectional fumarate reductase activity. At least seven distinct members of this family are found in Shewanella oneidensis, a species able to use a wide variety of pathways for respiraton.

>TIGR00275 flavoprotein, HI0933 family

Probab=96.64  E-value=0.0081  Score=60.29  Aligned_cols=51  Identities=18%  Similarity=0.379  Sum_probs=38.6

Q ss_pred             eeHHHHHHcCcEEEcCCeEEEEEeCCCCcEEEEEcCCCCEEeCCEEEEccCCcc
Q 012165          235 RYEQLYQQNGVKFVKGASIKNLEAGSDGRVAAVKLEDGSTIDADTIVIGIGAKP  288 (469)
Q Consensus       235 ~~~~~l~~~gV~~~~~~~v~~i~~~~~~~v~~v~~~~g~~i~~D~vi~a~G~~p  288 (469)
                      .+.+.+++.|+++++++.+.+++.. ++. ..+.+ +++++.+|.||+|+|...
T Consensus       110 ~L~~~l~~~gv~i~~~~~V~~i~~~-~~~-~~v~~-~~~~i~ad~VIlAtG~~s  160 (400)
T TIGR00275       110 ALLNELKELGVEILTNSKVKSIKKD-DNG-FGVET-SGGEYEADKVILATGGLS  160 (400)
T ss_pred             HHHHHHHHCCCEEEeCCEEEEEEec-CCe-EEEEE-CCcEEEcCEEEECCCCcc
Confidence            3456677889999999999999754 333 34555 566899999999999754

The model when searched with a partial length search brings in proteins with a dinucleotide-binding motif (Rossman fold) over the initial 40 residues of the model, including oxidoreductases and dehydrogenases. Partially characterized members include an FAD-binding protein from Bacillus cereus and flavoprotein HI0933 from Haemophilus influenzae.

>PRK09897 hypothetical protein; Provisional

Probab=96.64  E-value=0.01  Score=61.35  Aligned_cols=49  Identities=18%  Similarity=0.185  Sum_probs=35.4

Q ss_pred             HHHHcC--cEEEcCCeEEEEEeCCCCcEEEEEcCC-CCEEeCCEEEEccCCccC
Q 012165          239 LYQQNG--VKFVKGASIKNLEAGSDGRVAAVKLED-GSTIDADTIVIGIGAKPT  289 (469)
Q Consensus       239 ~l~~~g--V~~~~~~~v~~i~~~~~~~v~~v~~~~-g~~i~~D~vi~a~G~~p~  289 (469)
                      .+.+.|  +.++.+++|++++..+++ + .+.+.+ |..+.+|.||+|+|..++
T Consensus       116 ~a~~~G~~V~v~~~~~V~~I~~~~~g-~-~V~t~~gg~~i~aD~VVLAtGh~~p  167 (534)
T PRK09897        116 QARQQKFAVAVYESCQVTDLQITNAG-V-MLATNQDLPSETFDLAVIATGHVWP  167 (534)
T ss_pred             HHHHcCCeEEEEECCEEEEEEEeCCE-E-EEEECCCCeEEEcCEEEECCCCCCC
Confidence            334555  788888899999865433 3 466655 468999999999997543

>PRK11259 solA N-methyltryptophan oxidase; Provisional

Probab=96.63  E-value=0.013  Score=58.36  Aligned_cols=26  Identities=23%  Similarity=0.282  Sum_probs=23.7

Q ss_pred             eEEEEcCChHHHHHHHHHHhCCCeEe
Q 012165          209 KVVVVGGGYIGMEVAAAAVGWKLDTT  234 (469)
Q Consensus       209 ~vvVvG~G~~g~e~A~~l~~~g~~v~  234 (469)
                      +|+|||+|.+|+-+|..|++.|.+|+
T Consensus         5 dv~IIGgGi~G~s~A~~L~~~g~~V~   30 (376)
T PRK11259          5 DVIVIGLGSMGSAAGYYLARRGLRVL   30 (376)
T ss_pred             cEEEECCCHHHHHHHHHHHHCCCeEE
Confidence            58999999999999999999988876

>PF05834 Lycopene_cycl: Lycopene cyclase protein; InterPro: IPR008671 This family consists of lycopene beta and epsilon cyclase proteins

Probab=96.63  E-value=0.0094  Score=59.30  Aligned_cols=78  Identities=26%  Similarity=0.301  Sum_probs=59.3

Q ss_pred             eEEEEcCChHHHHHHHHH--HhCCCeEe----------------------------------------------------
Q 012165          209 KVVVVGGGYIGMEVAAAA--VGWKLDTT----------------------------------------------------  234 (469)
Q Consensus       209 ~vvVvG~G~~g~e~A~~l--~~~g~~v~----------------------------------------------------  234 (469)
                      .|+|||+|+.|+-+|..|  ++.+.+|.                                                    
T Consensus         1 DviIvGaGpAGlslA~~l~~~~~g~~Vllid~~~~~~~~~~~tW~~~~~~~~~~~~~v~~~w~~~~v~~~~~~~~~~~~~   80 (374)
T PF05834_consen    1 DVIIVGAGPAGLSLARRLADARPGLSVLLIDPKPKPPWPNDRTWCFWEKDLGPLDSLVSHRWSGWRVYFPDGSRILIDYP   80 (374)
T ss_pred             CEEEECCcHHHHHHHHHHHhcCCCCEEEEEcCCccccccCCcccccccccccchHHHHheecCceEEEeCCCceEEcccc
Confidence            378999999999999999  66776664                                                    


Q ss_pred             -----------eeHHHHHHcCcEEEcCCeEEEEEeCCCCcEEEEEcCCCCEEeCCEEEEccCCccC
Q 012165          235 -----------RYEQLYQQNGVKFVKGASIKNLEAGSDGRVAAVKLEDGSTIDADTIVIGIGAKPT  289 (469)
Q Consensus       235 -----------~~~~~l~~~gV~~~~~~~v~~i~~~~~~~v~~v~~~~g~~i~~D~vi~a~G~~p~  289 (469)
                                 .+.+.+...| .+..+..|++|+..++  ...+.+++|+++.++.||-|.|..+.
T Consensus        81 Y~~i~~~~f~~~l~~~~~~~~-~~~~~~~V~~i~~~~~--~~~v~~~~g~~i~a~~VvDa~g~~~~  143 (374)
T PF05834_consen   81 YCMIDRADFYEFLLERAAAGG-VIRLNARVTSIEETGD--GVLVVLADGRTIRARVVVDARGPSSP  143 (374)
T ss_pred             eEEEEHHHHHHHHHHHhhhCC-eEEEccEEEEEEecCc--eEEEEECCCCEEEeeEEEECCCcccc
Confidence                       2334444345 4566789999986544  23578899999999999999996654

Carotenoids with cyclic end groups are essential components of the photosynthetic membranes in all plants, algae, and cyanobacteria. These lipid-soluble compounds protect against photo-oxidation, harvest light for photosynthesis, and dissipate excess light energy absorbed by the antenna pigments. The cyclisation of lycopene (psi, psi-carotene) is a key branch point in the pathway of carotenoid biosynthesis. Two types of cyclic end groups are found in higher plant carotenoids: the beta and epsilon rings. Carotenoids with two beta rings are ubiquitous, and those with one beta and one epsilon ring are common; however, carotenoids with two epsilon rings are rare [].; GO: 0016705 oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen, 0016117 carotenoid biosynthetic process

>TIGR03329 Phn_aa_oxid putative aminophosphonate oxidoreductase

Probab=96.62  E-value=0.01  Score=60.73  Aligned_cols=26  Identities=35%  Similarity=0.533  Sum_probs=22.8

Q ss_pred             eEEEEcCChHHHHHHHHHHhC--CCeEe
Q 012165          209 KVVVVGGGYIGMEVAAAAVGW--KLDTT  234 (469)
Q Consensus       209 ~vvVvG~G~~g~e~A~~l~~~--g~~v~  234 (469)
                      .|+|||+|.+|+-+|..|++.  |.+|+
T Consensus        26 DVvIIGgGi~Gls~A~~La~~~~G~~V~   53 (460)
T TIGR03329        26 DVCIVGGGFTGLWTAIMIKQQRPALDVL   53 (460)
T ss_pred             CEEEECCCHHHHHHHHHHHHhCCCCeEE
Confidence            699999999999999999887  77775

This clade of sequences are members of the pfam01266 family of FAD-dependent oxidoreductases. Characterized proteins within this family include glycerol-3-phosphate dehydrogenase (1.1.99.5), sarcosine oxidase beta subunit (1.5.3.1) and a number of deaminating amino acid oxidases (1.4.-.-). These genes have been consistently observed in a genomic context including genes for the import and catabolism of 2-aminoethylphosphonate (AEP). If the substrate of this oxidoreductase is AEP itself, then it is probably acting in the manner of a deaminating oxidase, resulting in the same product (phosphonoacetaldehyde) as the transaminase PhnW (TIGR02326), but releasing ammonia instead of coupling to pyruvate:alanine. Alternatively, it is reasonable to suppose that the various ABC cassette transporters which are also associated with these loci allow the import of phosphonates closely related to AEP which may not be substrates for PhnW.

>KOG2311 consensus NAD/FAD-utilizing protein possibly involved in translation [Translation, ribosomal structure and biogenesis]

Probab=96.61  E-value=0.0059  Score=60.10  Aligned_cols=35  Identities=26%  Similarity=0.453  Sum_probs=29.6

Q ss_pred             CCCCcEEEEcCcHHHHHHHHHHHHcCCCCCcEEEEcCC
Q 012165           49 NENREFVIVGGGNAAGYAARTFVEHGMADGRLCIVSKE   86 (469)
Q Consensus        49 ~~~~~vvIIGgG~AGl~aA~~L~~~g~~~~~V~vie~~   86 (469)
                      ...+||||||||.||..||...++.|-   +-+++..+
T Consensus        26 ~~~~dVvVIGgGHAG~EAAaAaaR~Ga---~TlLlT~~   60 (679)
T KOG2311|consen   26 TSTYDVVVIGGGHAGCEAAAAAARLGA---RTLLLTHN   60 (679)
T ss_pred             CCcccEEEECCCccchHHHHHHHhcCC---ceEEeecc
Confidence            567999999999999999999999986   56666554

>PRK08958 sdhA succinate dehydrogenase flavoprotein subunit; Reviewed

Probab=96.59  E-value=0.0027  Score=66.91  Aligned_cols=36  Identities=25%  Similarity=0.289  Sum_probs=31.9

Q ss_pred             CCCcEEEEcCcHHHHHHHHHHHHcCCCCCcEEEEcCCCC
Q 012165           50 ENREFVIVGGGNAAGYAARTFVEHGMADGRLCIVSKEAY   88 (469)
Q Consensus        50 ~~~~vvIIGgG~AGl~aA~~L~~~g~~~~~V~vie~~~~   88 (469)
                      ..+||||||+|.||++||.++++.|.   +|+|+|+...
T Consensus         6 ~~~DVlVVG~G~AGl~AAi~Aa~~G~---~V~lleK~~~   41 (588)
T PRK08958          6 REFDAVVIGAGGAGMRAALQISQSGQ---SCALLSKVFP   41 (588)
T ss_pred             cccCEEEECccHHHHHHHHHHHHcCC---cEEEEEccCC
Confidence            35799999999999999999999876   7999999753

>PRK06481 fumarate reductase flavoprotein subunit; Validated

Probab=96.59  E-value=0.011  Score=61.43  Aligned_cols=56  Identities=20%  Similarity=0.362  Sum_probs=40.6

Q ss_pred             HHHHcCcEEEcCCeEEEEEeCCCCcEEEEEc--CCC--CEEeCCEEEEccC-CccCCchhhh
Q 012165          239 LYQQNGVKFVKGASIKNLEAGSDGRVAAVKL--EDG--STIDADTIVIGIG-AKPTVSPFER  295 (469)
Q Consensus       239 ~l~~~gV~~~~~~~v~~i~~~~~~~v~~v~~--~~g--~~i~~D~vi~a~G-~~p~~~~~~~  295 (469)
                      .+++.|+++++++.++++.. +++++.++.+  .++  ..+.++.||+|+| +..|.+++++
T Consensus       199 ~~~~~gv~i~~~t~v~~l~~-~~g~V~Gv~~~~~~g~~~~i~a~~VVlAtGG~~~n~~m~~~  259 (506)
T PRK06481        199 NVQERKIPLFVNADVTKITE-KDGKVTGVKVKINGKETKTISSKAVVVTTGGFGANKDMIAK  259 (506)
T ss_pred             HHHHcCCeEEeCCeeEEEEe-cCCEEEEEEEEeCCCeEEEEecCeEEEeCCCcccCHHHHHH
Confidence            34567899999999999975 3577766655  343  3689999999997 6666555544

>KOG2311 consensus NAD/FAD-utilizing protein possibly involved in translation [Translation, ribosomal structure and biogenesis]

Probab=96.59  E-value=0.0034  Score=61.70  Aligned_cols=78  Identities=33%  Similarity=0.490  Sum_probs=56.5

Q ss_pred             CeEEEEcCChHHHHHHHHHHhCCCeEe-----------------------------------------------------
Q 012165          208 KKVVVVGGGYIGMEVAAAAVGWKLDTT-----------------------------------------------------  234 (469)
Q Consensus       208 ~~vvVvG~G~~g~e~A~~l~~~g~~v~-----------------------------------------------------  234 (469)
                      -.|+|||||..|+|.|.+.++.|.+..                                                     
T Consensus        29 ~dVvVIGgGHAG~EAAaAaaR~Ga~TlLlT~~ld~Ig~msCNPsfGGigKg~LmrEVDALdGl~~rvcD~s~vq~k~LNr  108 (679)
T KOG2311|consen   29 YDVVVIGGGHAGCEAAAAAARLGARTLLLTHNLDTIGEMSCNPSFGGIGKGHLMREVDALDGLCSRVCDQSGVQYKVLNR  108 (679)
T ss_pred             ccEEEECCCccchHHHHHHHhcCCceEEeecccccccccccCcccCCcccceeeeeehhhcchHhhhhhhhhhhHHHhhc
Confidence            479999999999999999999987764                                                     


Q ss_pred             ----------------eeHHHHH-----HcCcEEEcCCeEEEEEe-CC-C--CcEEEEEcCCCCEEeCCEEEEccCC
Q 012165          235 ----------------RYEQLYQ-----QNGVKFVKGASIKNLEA-GS-D--GRVAAVKLEDGSTIDADTIVIGIGA  286 (469)
Q Consensus       235 ----------------~~~~~l~-----~~gV~~~~~~~v~~i~~-~~-~--~~v~~v~~~~g~~i~~D~vi~a~G~  286 (469)
                                      .+++.++     ..+.+++.+. |.++.- ++ +  .++.+|.+.||+.+.++.||+.||.
T Consensus       109 s~GPAVwg~RAQiDR~lYkk~MQkei~st~nL~ire~~-V~dliv~~~~~~~~~~~gV~l~dgt~v~a~~VilTTGT  184 (679)
T KOG2311|consen  109 SKGPAVWGLRAQIDRKLYKKNMQKEISSTPNLEIREGA-VADLIVEDPDDGHCVVSGVVLVDGTVVYAESVILTTGT  184 (679)
T ss_pred             cCCCcccChHHhhhHHHHHHHHHHHhccCCcchhhhhh-hhheeeccCCCCceEEEEEEEecCcEeccceEEEeecc
Confidence                            2222222     2456666554 444322 22 2  2478999999999999999999995

>PLN02464 glycerol-3-phosphate dehydrogenase

Probab=96.59  E-value=0.0027  Score=67.42  Aligned_cols=55  Identities=16%  Similarity=0.202  Sum_probs=40.7

Q ss_pred             eeHHHHHHcCcEEEcCCeEEEEEeCC-CCcEEEEEc---CCCC--EEeCCEEEEccCCccC
Q 012165          235 RYEQLYQQNGVKFVKGASIKNLEAGS-DGRVAAVKL---EDGS--TIDADTIVIGIGAKPT  289 (469)
Q Consensus       235 ~~~~~l~~~gV~~~~~~~v~~i~~~~-~~~v~~v~~---~~g~--~i~~D~vi~a~G~~p~  289 (469)
                      .+.+..++.|++++.++.|.++..++ ++.+.+|..   .+++  ++.+|.||+|+|....
T Consensus       237 al~~~A~~~Ga~i~~~~~V~~l~~~~~~g~v~gV~v~d~~tg~~~~i~a~~VVnAaGaws~  297 (627)
T PLN02464        237 ALACTAALAGAAVLNYAEVVSLIKDESTGRIVGARVRDNLTGKEFDVYAKVVVNAAGPFCD  297 (627)
T ss_pred             HHHHHHHhCCcEEEeccEEEEEEEecCCCcEEEEEEEECCCCcEEEEEeCEEEECCCHhHH
Confidence            34456778899999999999998653 456656554   2343  6899999999997653

>PRK06996 hypothetical protein; Provisional

Probab=96.58  E-value=0.01  Score=59.54  Aligned_cols=51  Identities=18%  Similarity=0.253  Sum_probs=38.4

Q ss_pred             eeHHHHHHcCcEEEcCCeEEEEEeCCCCcEEEEEcCCC---CEEeCCEEEEccCCc
Q 012165          235 RYEQLYQQNGVKFVKGASIKNLEAGSDGRVAAVKLEDG---STIDADTIVIGIGAK  287 (469)
Q Consensus       235 ~~~~~l~~~gV~~~~~~~v~~i~~~~~~~v~~v~~~~g---~~i~~D~vi~a~G~~  287 (469)
                      .+.+.+++.|++++.++++++++.++++ + .+.+.++   +++.+|+||-|-|..
T Consensus       120 ~L~~~~~~~g~~~~~~~~v~~~~~~~~~-v-~v~~~~~~g~~~i~a~lvIgADG~~  173 (398)
T PRK06996        120 ALARAVRGTPVRWLTSTTAHAPAQDADG-V-TLALGTPQGARTLRARIAVQAEGGL  173 (398)
T ss_pred             HHHHHHHhCCCEEEcCCeeeeeeecCCe-E-EEEECCCCcceEEeeeEEEECCCCC
Confidence            3455567779999999999999765444 2 4566654   589999999999964

>PRK06126 hypothetical protein; Provisional

Probab=96.58  E-value=0.012  Score=61.69  Aligned_cols=45  Identities=33%  Similarity=0.529  Sum_probs=33.2

Q ss_pred             cCcEEEcCCeEEEEEeCCCCcEEEEEc---CCCC--EEeCCEEEEccCCccC
Q 012165          243 NGVKFVKGASIKNLEAGSDGRVAAVKL---EDGS--TIDADTIVIGIGAKPT  289 (469)
Q Consensus       243 ~gV~~~~~~~v~~i~~~~~~~v~~v~~---~~g~--~i~~D~vi~a~G~~p~  289 (469)
                      .|+++++++++++++.++++ +. +.+   .+|+  ++.+|+||.|.|....
T Consensus       140 ~~v~i~~~~~v~~i~~~~~~-v~-v~~~~~~~g~~~~i~ad~vVgADG~~S~  189 (545)
T PRK06126        140 PGVTLRYGHRLTDFEQDADG-VT-ATVEDLDGGESLTIRADYLVGCDGARSA  189 (545)
T ss_pred             CCceEEeccEEEEEEECCCe-EE-EEEEECCCCcEEEEEEEEEEecCCcchH
Confidence            48999999999999865443 32 333   3454  6899999999998653

>PRK12775 putative trifunctional 2-polyprenylphenol hydroxylase/glutamate synthase subunit beta/ferritin domain-containing protein; Provisional

Probab=96.57  E-value=0.0037  Score=69.81  Aligned_cols=73  Identities=30%  Similarity=0.416  Sum_probs=53.9

Q ss_pred             CCeEEEEcCChHHHHHHHHHHhCCCeEe---------------------------eeHHHHHHcCcEEEcCCeEEEEEeC
Q 012165          207 AKKVVVVGGGYIGMEVAAAAVGWKLDTT---------------------------RYEQLYQQNGVKFVKGASIKNLEAG  259 (469)
Q Consensus       207 ~~~vvVvG~G~~g~e~A~~l~~~g~~v~---------------------------~~~~~l~~~gV~~~~~~~v~~i~~~  259 (469)
                      +++|+|||+|+.|+.+|..|+++|.+|+                           ...+.+++.||++++++.+..    
T Consensus       430 ~~kVaIIG~GPAGLsaA~~La~~G~~VtV~E~~~~~GG~l~~gip~~rl~~e~~~~~~~~l~~~Gv~~~~~~~vg~----  505 (1006)
T PRK12775        430 LGKVAICGSGPAGLAAAADLVKYGVDVTVYEALHVVGGVLQYGIPSFRLPRDIIDREVQRLVDIGVKIETNKVIGK----  505 (1006)
T ss_pred             CCEEEEECCCHHHHHHHHHHHHcCCcEEEEecCCCCcceeeccCCccCCCHHHHHHHHHHHHHCCCEEEeCCccCC----
Confidence            5799999999999999999999999987                           224567888999998864310    


Q ss_pred             CCCcEEEEEcCCC-CEEeCCEEEEccCCc-cC
Q 012165          260 SDGRVAAVKLEDG-STIDADTIVIGIGAK-PT  289 (469)
Q Consensus       260 ~~~~v~~v~~~~g-~~i~~D~vi~a~G~~-p~  289 (469)
                            .+.+.+- ....+|.||+|+|.. |.
T Consensus       506 ------~~~~~~l~~~~~yDaViIATGa~~pr  531 (1006)
T PRK12775        506 ------TFTVPQLMNDKGFDAVFLGVGAGAPT  531 (1006)
T ss_pred             ------ccCHHHHhhccCCCEEEEecCCCCCC
Confidence                  1222211 124589999999984 54

>PRK06854 adenylylsulfate reductase subunit alpha; Validated

Probab=96.57  E-value=0.0023  Score=67.79  Aligned_cols=35  Identities=31%  Similarity=0.431  Sum_probs=31.4

Q ss_pred             CCcEEEEcCcHHHHHHHHHHHHc--CCCCCcEEEEcCCCC
Q 012165           51 NREFVIVGGGNAAGYAARTFVEH--GMADGRLCIVSKEAY   88 (469)
Q Consensus        51 ~~~vvIIGgG~AGl~aA~~L~~~--g~~~~~V~vie~~~~   88 (469)
                      .+||||||+|.||++||.++++.  |.   +|+|||+.+.
T Consensus        11 ~~DVlVIG~G~AGl~AAi~Aae~~~G~---~V~lieK~~~   47 (608)
T PRK06854         11 DTDILIIGGGMAGCGAAFEAKEWAPDL---KVLIVEKANI   47 (608)
T ss_pred             EeCEEEECcCHHHHHHHHHHHHhCCCC---eEEEEECCCc
Confidence            47999999999999999999998  65   7999999764

>PRK02106 choline dehydrogenase; Validated

Probab=96.54  E-value=0.003  Score=66.36  Aligned_cols=61  Identities=15%  Similarity=0.242  Sum_probs=45.4

Q ss_pred             HHHHcCcEEEcCCeEEEEEeCCCCcEEEEEcCCC----CEEeCCEEEEccCCccCCchhhhcCCcc
Q 012165          239 LYQQNGVKFVKGASIKNLEAGSDGRVAAVKLEDG----STIDADTIVIGIGAKPTVSPFERVGLNS  300 (469)
Q Consensus       239 ~l~~~gV~~~~~~~v~~i~~~~~~~v~~v~~~~g----~~i~~D~vi~a~G~~p~~~~~~~~gl~~  300 (469)
                      ..+..++++++++.|++|..+ ++++.+|++.+.    ..+.++.||+|.|..-...+|..+|+..
T Consensus       210 a~~~~nl~i~~~a~V~rI~~~-~~~a~GV~~~~~~~~~~~~~ak~VILaaGai~TP~LLl~SGIG~  274 (560)
T PRK02106        210 ALKRPNLTIVTHALTDRILFE-GKRAVGVEYERGGGRETARARREVILSAGAINSPQLLQLSGIGP  274 (560)
T ss_pred             ccCCCCcEEEcCCEEEEEEEe-CCeEEEEEEEeCCcEEEEEeeeeEEEccCCCCCHHHHhhcCCCC
Confidence            334678999999999999865 566778877443    2468999999999866556776667643

>PRK12839 hypothetical protein; Provisional

Probab=96.53  E-value=0.0038  Score=65.51  Aligned_cols=42  Identities=21%  Similarity=0.249  Sum_probs=35.8

Q ss_pred             cCCCCCCcEEEEcCcHHHHHHHHHHHHcCCCCCcEEEEcCCCCCC
Q 012165           46 SFANENREFVIVGGGNAAGYAARTFVEHGMADGRLCIVSKEAYAP   90 (469)
Q Consensus        46 ~~~~~~~~vvIIGgG~AGl~aA~~L~~~g~~~~~V~vie~~~~~~   90 (469)
                      |.....+||+|||+|.+|++||..+++.|.   +|+|||+.....
T Consensus         3 ~~~~~~~dv~ViG~G~aG~~aa~~~~~~g~---~v~~iek~~~~g   44 (572)
T PRK12839          3 PSMTHTYDVVVVGSGAGGLSAAVAAAYGGA---KVLVVEKASTCG   44 (572)
T ss_pred             CCcCCcCCEEEECcCHHHHHHHHHHHHCCC---cEEEEecCCCCC
Confidence            344557899999999999999999999986   799999986543

>KOG2404 consensus Fumarate reductase, flavoprotein subunit [Energy production and conversion]

Probab=96.51  E-value=0.005  Score=57.58  Aligned_cols=34  Identities=24%  Similarity=0.386  Sum_probs=29.7

Q ss_pred             cEEEEcCcHHHHHHHHHHHHcCCCCCcEEEEcCCCCC
Q 012165           53 EFVIVGGGNAAGYAARTFVEHGMADGRLCIVSKEAYA   89 (469)
Q Consensus        53 ~vvIIGgG~AGl~aA~~L~~~g~~~~~V~vie~~~~~   89 (469)
                      .|||||+|.|||+|+..+...+-   .|+++|++...
T Consensus        11 pvvVIGgGLAGLsasn~iin~gg---~V~llek~~s~   44 (477)
T KOG2404|consen   11 PVVVIGGGLAGLSASNDIINKGG---IVILLEKAGSI   44 (477)
T ss_pred             cEEEECCchhhhhhHHHHHhcCC---eEEEEeccCCc
Confidence            69999999999999999998864   59999987643

>KOG1346 consensus Programmed cell death 8 (apoptosis-inducing factor) [Signal transduction mechanisms]

Probab=96.50  E-value=0.0042  Score=59.98  Aligned_cols=104  Identities=21%  Similarity=0.220  Sum_probs=69.5

Q ss_pred             CCCCcEEEEcCcHHHHHHHHHHHHcCC-CCCcEEEEcCCCCCCCCCCCCcccccCCCCCCCCCCCCCccccCCCCCCCCH
Q 012165           49 NENREFVIVGGGNAAGYAARTFVEHGM-ADGRLCIVSKEAYAPYERPALTKGYLFPLDKKPARLPGFHTCVGSGGERQTP  127 (469)
Q Consensus        49 ~~~~~vvIIGgG~AGl~aA~~L~~~g~-~~~~V~vie~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  127 (469)
                      ...+.|.|||+|+-|...|..|.+.-- ...+|.-+=++.+   .   ..+           -+|.       +..+...
T Consensus       345 aek~siTIiGnGflgSELacsl~rk~r~~g~eV~QvF~Ek~---n---m~k-----------iLPe-------yls~wt~  400 (659)
T KOG1346|consen  345 AEKQSITIIGNGFLGSELACSLKRKYRNEGVEVHQVFEEKY---N---MEK-----------ILPE-------YLSQWTI  400 (659)
T ss_pred             hhcceEEEEcCcchhhhHHHHHHHhhhccCcEEEEeecccC---C---hhh-----------hhHH-------HHHHHHH
Confidence            345789999999999999999987532 1234433222221   0   000           0110       0012344


Q ss_pred             hHHHHCCcEEEeCCcEEEEeCCCc--EEEeCCCeEEEeccEEeccCCCCCc
Q 012165          128 EWYKEKGIEMIYQDPVTSIDIEKQ--TLITNSGKLLKYGSLIVATGCTASR  176 (469)
Q Consensus       128 ~~~~~~~i~~~~~~~v~~id~~~~--~v~~~~g~~~~yd~lVlAtG~~~~~  176 (469)
                      +.+++.|+.++.+..|.++.....  .+.+.||.++..|.+|+|+|..|+.
T Consensus       401 ekir~~GV~V~pna~v~sv~~~~~nl~lkL~dG~~l~tD~vVvavG~ePN~  451 (659)
T KOG1346|consen  401 EKIRKGGVDVRPNAKVESVRKCCKNLVLKLSDGSELRTDLVVVAVGEEPNS  451 (659)
T ss_pred             HHHHhcCceeccchhhhhhhhhccceEEEecCCCeeeeeeEEEEecCCCch
Confidence            557888999999988888765443  6788999999999999999998863

>PRK12835 3-ketosteroid-delta-1-dehydrogenase; Reviewed

Probab=96.49  E-value=0.0034  Score=66.10  Aligned_cols=60  Identities=18%  Similarity=0.304  Sum_probs=43.1

Q ss_pred             eHHHHHHcCcEEEcCCeEEEEEeCCCCcEEEEEcC-CCC--EEeCC-EEEEccC-CccCCchhhh
Q 012165          236 YEQLYQQNGVKFVKGASIKNLEAGSDGRVAAVKLE-DGS--TIDAD-TIVIGIG-AKPTVSPFER  295 (469)
Q Consensus       236 ~~~~l~~~gV~~~~~~~v~~i~~~~~~~v~~v~~~-~g~--~i~~D-~vi~a~G-~~p~~~~~~~  295 (469)
                      +.+..++.|+++++++.++++..+++++|.+|... +|+  .+.+. .||+|+| +.-|.+++++
T Consensus       219 l~~~~~~~gv~i~~~~~~~~Li~d~~g~V~Gv~~~~~~~~~~i~a~~aVilAtGGf~~N~em~~~  283 (584)
T PRK12835        219 LRLALKDAGVPLWLDSPMTELITDPDGAVVGAVVEREGRTLRIGARRGVILATGGFDHDMDWRKE  283 (584)
T ss_pred             HHHHHHhCCceEEeCCEEEEEEECCCCcEEEEEEEeCCcEEEEEeceeEEEecCcccCCHHHHHH
Confidence            45667788999999999999987667888887654 333  46786 5888776 4555555544

>TIGR03364 HpnW_proposed FAD dependent oxidoreductase TIGR03364

Probab=96.44  E-value=0.015  Score=57.54  Aligned_cols=46  Identities=22%  Similarity=0.416  Sum_probs=34.7

Q ss_pred             HHHHHHc-CcEEEcCCeEEEEEeCCCCcEEEEEcCCCCEEeCCEEEEccCCccC
Q 012165          237 EQLYQQN-GVKFVKGASIKNLEAGSDGRVAAVKLEDGSTIDADTIVIGIGAKPT  289 (469)
Q Consensus       237 ~~~l~~~-gV~~~~~~~v~~i~~~~~~~v~~v~~~~g~~i~~D~vi~a~G~~p~  289 (469)
                      .+.+.+. |++++.++.|.+++.  +    .|.+.+|+ +.+|.||+|+|...+
T Consensus       152 ~~~~~~~~Gv~i~~~t~V~~i~~--~----~v~t~~g~-i~a~~VV~A~G~~s~  198 (365)
T TIGR03364       152 AAYLAEQHGVEFHWNTAVTSVET--G----TVRTSRGD-VHADQVFVCPGADFE  198 (365)
T ss_pred             HHHHHhcCCCEEEeCCeEEEEec--C----eEEeCCCc-EEeCEEEECCCCChh
Confidence            3444554 999999999999973  2    46677774 789999999997643

This clade of FAD dependent oxidoreductases (members of the pfam01266 family) is syntenically associated with a family of proposed phosphonatase-like enzymes (TIGR03351) and is also found (less frequently) in association with phosphonate transporter components. A likely role for this enzyme involves the oxidative deamination of an aminophosphonate differring slightly from 2-aminoethylphosphonate, possibly 1-hydroxy-2-aminoethylphosphonate (see the comments for TIGR03351). Many members of the larger FAD dependent oxidoreductase family act as amino acid oxidative deaminases.

>PRK13984 putative oxidoreductase; Provisional

Probab=96.44  E-value=0.019  Score=61.10  Aligned_cols=97  Identities=21%  Similarity=0.238  Sum_probs=58.3

Q ss_pred             CCcEEEEcCcHHHHHHHHHHHHcCC---CCCcEEEEcCCCCCCCCCCCCcccccCCCCCCCCCCCCCccccCCCCCCCCH
Q 012165           51 NREFVIVGGGNAAGYAARTFVEHGM---ADGRLCIVSKEAYAPYERPALTKGYLFPLDKKPARLPGFHTCVGSGGERQTP  127 (469)
Q Consensus        51 ~~~vvIIGgG~AGl~aA~~L~~~g~---~~~~V~vie~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  127 (469)
                      .++|+|||||..|+-+|..|.+.+.   ...+|+++..+...    ..     + +     ...             ...
T Consensus       418 ~k~VvVIGGG~~g~e~A~~l~r~~~~~~g~~~V~v~~~~r~~----~~-----~-~-----~~~-------------~e~  469 (604)
T PRK13984        418 PRSLVVIGGGNVAMDIARSMARLQKMEYGEVNVKVTSLERTF----EE-----M-P-----ADM-------------EEI  469 (604)
T ss_pred             CCcEEEECCchHHHHHHHHHHhccccccCceEEEEeccccCc----cc-----C-C-----CCH-------------HHH
Confidence            4799999999999999999998752   12357776422110    00     0 0     000             001


Q ss_pred             hHHHHCCcEEEeCCcEEEEeCCCcEE---Ee-------------------CCCeEEEeccEEeccCCCCC
Q 012165          128 EWYKEKGIEMIYQDPVTSIDIEKQTL---IT-------------------NSGKLLKYGSLIVATGCTAS  175 (469)
Q Consensus       128 ~~~~~~~i~~~~~~~v~~id~~~~~v---~~-------------------~~g~~~~yd~lVlAtG~~~~  175 (469)
                      ....+.|++++.+..+..+..++..|   .+                   .++.++++|.||+|+|..|.
T Consensus       470 ~~~~~~GV~i~~~~~~~~i~~~~g~v~~v~~~~~~~~~~~~G~~~~~~~~g~~~~i~aD~Vi~aiG~~p~  539 (604)
T PRK13984        470 EEGLEEGVVIYPGWGPMEVVIENDKVKGVKFKKCVEVFDEEGRFNPKFDESDQIIVEADMVVEAIGQAPD  539 (604)
T ss_pred             HHHHHcCCEEEeCCCCEEEEccCCEEEEEEEEEEeeccCCCCCccceecCCceEEEECCEEEEeeCCCCC
Confidence            12345788888776666654332211   11                   12246999999999998874

>PRK12844 3-ketosteroid-delta-1-dehydrogenase; Reviewed

Probab=96.42  E-value=0.0042  Score=65.14  Aligned_cols=37  Identities=30%  Similarity=0.413  Sum_probs=33.2

Q ss_pred             CCCcEEEEcCcHHHHHHHHHHHHcCCCCCcEEEEcCCCCC
Q 012165           50 ENREFVIVGGGNAAGYAARTFVEHGMADGRLCIVSKEAYA   89 (469)
Q Consensus        50 ~~~~vvIIGgG~AGl~aA~~L~~~g~~~~~V~vie~~~~~   89 (469)
                      ..+||||||+|.||++||..+++.|.   +|+|||+.+..
T Consensus         5 ~~~DvvIiG~G~aGl~aA~~~a~~G~---~v~liEk~~~~   41 (557)
T PRK12844          5 ETYDVVVVGSGGGGMCAALAAADSGL---EPLIVEKQDKV   41 (557)
T ss_pred             CcCCEEEECcCHHHHHHHHHHHHCCC---cEEEEecCCCC
Confidence            36899999999999999999999987   79999998654

>TIGR02360 pbenz_hydroxyl 4-hydroxybenzoate 3-monooxygenase

Probab=96.42  E-value=0.018  Score=57.71  Aligned_cols=81  Identities=22%  Similarity=0.246  Sum_probs=59.2

Q ss_pred             CeEEEEcCChHHHHHHHHHHhCCCeEe-----------------------------------------------------
Q 012165          208 KKVVVVGGGYIGMEVAAAAVGWKLDTT-----------------------------------------------------  234 (469)
Q Consensus       208 ~~vvVvG~G~~g~e~A~~l~~~g~~v~-----------------------------------------------------  234 (469)
                      .+|+|||+|+.|+-+|..|++.|.+|.                                                     
T Consensus         3 ~dV~IVGaG~aGl~~A~~L~~~G~~v~viE~~~~~~~~~~~~a~~l~~~~~~~L~~lGl~~~l~~~~~~~~~~~~~~~~~   82 (390)
T TIGR02360         3 TQVAIIGAGPSGLLLGQLLHKAGIDNVILERQSRDYVLGRIRAGVLEQGTVDLLREAGVDERMDREGLVHEGTEIAFDGQ   82 (390)
T ss_pred             ceEEEECccHHHHHHHHHHHHCCCCEEEEECCCCcccCCceeEeeECHHHHHHHHHCCChHHHHhcCceecceEEeeCCE
Confidence            579999999999999999999988876                                                     


Q ss_pred             -------------------------eeHHHHHHcCcEEEcCCeEEEEEeCCCCcEEEEEcC-CCC--EEeCCEEEEccCC
Q 012165          235 -------------------------RYEQLYQQNGVKFVKGASIKNLEAGSDGRVAAVKLE-DGS--TIDADTIVIGIGA  286 (469)
Q Consensus       235 -------------------------~~~~~l~~~gV~~~~~~~v~~i~~~~~~~v~~v~~~-~g~--~i~~D~vi~a~G~  286 (469)
                                               .+.+.+.+.|+.++++..+..+...++..+ .|.+. +|+  ++.+|+||-|-|.
T Consensus        83 ~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~~~~g~~~~~~~~~v~~~~~~~~~~-~V~~~~~g~~~~i~adlvIGADG~  161 (390)
T TIGR02360        83 RFRIDLKALTGGKTVMVYGQTEVTRDLMEAREAAGLTTVYDADDVRLHDLAGDRP-YVTFERDGERHRLDCDFIAGCDGF  161 (390)
T ss_pred             EEEEeccccCCCceEEEeCHHHHHHHHHHHHHhcCCeEEEeeeeEEEEecCCCcc-EEEEEECCeEEEEEeCEEEECCCC
Confidence                                     112334456888888877777653222222 45664 775  6899999999998


Q ss_pred             ccC
Q 012165          287 KPT  289 (469)
Q Consensus       287 ~p~  289 (469)
                      +..
T Consensus       162 ~S~  164 (390)
T TIGR02360       162 HGV  164 (390)
T ss_pred             chh
Confidence            764

Members of this family are the enzyme 4-hydroxybenzoate 3-monooxygenase, also called p-hydroxybenzoate hydroxylase. It converts 4-hydroxybenzoate + NADPH + molecular oxygen to protocatechuate + NADPH + water. It contains monooxygenase (pfam01360) and FAD binding (pfam01494) domains. Pathways that contain this enzyme include the protocatechuate 4,5-degradation pathway.

>PRK07538 hypothetical protein; Provisional

Probab=96.40  E-value=0.018  Score=58.04  Aligned_cols=44  Identities=23%  Similarity=0.313  Sum_probs=32.3

Q ss_pred             C-cEEEcCCeEEEEEeCCCCcEEEEEcCCC-----CEEeCCEEEEccCCccC
Q 012165          244 G-VKFVKGASIKNLEAGSDGRVAAVKLEDG-----STIDADTIVIGIGAKPT  289 (469)
Q Consensus       244 g-V~~~~~~~v~~i~~~~~~~v~~v~~~~g-----~~i~~D~vi~a~G~~p~  289 (469)
                      | +.+++++++++++.++++.+  +.+.++     +++.+|+||-|-|....
T Consensus       117 g~~~i~~~~~v~~~~~~~~~~~--~~~~~~~~g~~~~~~adlvIgADG~~S~  166 (413)
T PRK07538        117 GPDAVRTGHRVVGFEQDADVTV--VFLGDRAGGDLVSVRGDVLIGADGIHSA  166 (413)
T ss_pred             CCcEEEcCCEEEEEEecCCceE--EEEeccCCCccceEEeeEEEECCCCCHH
Confidence            5 46999999999986655533  333332     48999999999998654

>TIGR01317 GOGAT_sm_gam glutamate synthases, NADH/NADPH, small subunit

Probab=96.40  E-value=0.0054  Score=63.17  Aligned_cols=71  Identities=28%  Similarity=0.317  Sum_probs=53.4

Q ss_pred             cCCeEEEEcCChHHHHHHHHHHhCCCeEee---------------------------eHHHHHHcCcEEEcCCeEEEEEe
Q 012165          206 KAKKVVVVGGGYIGMEVAAAAVGWKLDTTR---------------------------YEQLYQQNGVKFVKGASIKNLEA  258 (469)
Q Consensus       206 ~~~~vvVvG~G~~g~e~A~~l~~~g~~v~~---------------------------~~~~l~~~gV~~~~~~~v~~i~~  258 (469)
                      .+++++|||+|+.|+.+|..|++.|.+++.                           ..+.+++.||++++++.+..-  
T Consensus       142 ~~~~V~IIGaG~aGl~aA~~L~~~g~~V~v~e~~~~~gG~l~~gip~~~~~~~~~~~~~~~~~~~Gv~~~~~~~v~~~--  219 (485)
T TIGR01317       142 TGKKVAVVGSGPAGLAAADQLNRAGHTVTVFEREDRCGGLLMYGIPNMKLDKAIVDRRIDLLSAEGIDFVTNTEIGVD--  219 (485)
T ss_pred             CCCEEEEECCcHHHHHHHHHHHHcCCeEEEEecCCCCCceeeccCCCccCCHHHHHHHHHHHHhCCCEEECCCEeCCc--
Confidence            457999999999999999999999988871                           124567789999998766311  


Q ss_pred             CCCCcEEEEEcCCCCEEeCCEEEEccCCc
Q 012165          259 GSDGRVAAVKLEDGSTIDADTIVIGIGAK  287 (469)
Q Consensus       259 ~~~~~v~~v~~~~g~~i~~D~vi~a~G~~  287 (469)
                              +.. ++....+|.||+|+|..
T Consensus       220 --------~~~-~~~~~~~d~VilAtGa~  239 (485)
T TIGR01317       220 --------ISA-DELKEQFDAVVLAGGAT  239 (485)
T ss_pred             --------cCH-HHHHhhCCEEEEccCCC
Confidence                    111 11235799999999997

This model represents one of three built for the NADPH-dependent or NADH-dependent glutamate synthase (EC 1.4.1.13 and 1.4.1.14, respectively) small subunit or homologous region. TIGR01316 describes a family in several archaeal and deeply branched bacterial lineages of a homotetrameric form for which there is no large subunit. Another model describes glutamate synthase small subunit from gamma and some alpha subdivision Proteobacteria plus paralogs of unknown function. This model describes the small subunit, or homologous region of longer forms proteins, of eukaryotes, Gram-positive bacteria, cyanobacteria, and some other lineages. All members with known function participate in NADH or NADPH-dependent reactions to interconvert between glutamine plus 2-oxoglutarate and two molecules of glutamate.

>PRK06263 sdhA succinate dehydrogenase flavoprotein subunit; Reviewed

Probab=96.37  E-value=0.0038  Score=65.35  Aligned_cols=35  Identities=34%  Similarity=0.474  Sum_probs=30.8

Q ss_pred             CCCcEEEEcCcHHHHHHHHHHHHcCCCCCcEEEEcCCCC
Q 012165           50 ENREFVIVGGGNAAGYAARTFVEHGMADGRLCIVSKEAY   88 (469)
Q Consensus        50 ~~~~vvIIGgG~AGl~aA~~L~~~g~~~~~V~vie~~~~   88 (469)
                      ..+||||||+|.||++||.++ +.|.   +|+|+|+.+.
T Consensus         6 ~~~DVlVVG~G~AGl~AAi~A-~~G~---~VilleK~~~   40 (543)
T PRK06263          6 MITDVLIIGSGGAGARAAIEA-ERGK---NVVIVSKGLF   40 (543)
T ss_pred             eccCEEEECccHHHHHHHHHH-hcCC---CEEEEEccCC
Confidence            457999999999999999999 8776   7999999753

>TIGR02061 aprA adenosine phosphosulphate reductase, alpha subunit

Probab=96.35  E-value=0.0036  Score=65.94  Aligned_cols=33  Identities=33%  Similarity=0.557  Sum_probs=29.1

Q ss_pred             cEEEEcCcHHHHHHHHHHH----HcCCCCCcEEEEcCCCC
Q 012165           53 EFVIVGGGNAAGYAARTFV----EHGMADGRLCIVSKEAY   88 (469)
Q Consensus        53 ~vvIIGgG~AGl~aA~~L~----~~g~~~~~V~vie~~~~   88 (469)
                      ||||||||.||++||.+++    +.|.   +|+|+|+...
T Consensus         1 DVlVIGsG~AGL~AAl~Aa~~~~e~G~---~VilieK~~~   37 (614)
T TIGR02061         1 DLLIVGGGMGGCGAAFEAVYWGDKKGL---KIVLVEKANL   37 (614)
T ss_pred             CEEEECCCHHHHHHHHHHHhhhhhCCC---eEEEEEccCC
Confidence            7999999999999999998    5565   7999999764

During dissimilatory sulfate reduction or sulfur oxidation, adenylylsulfate (APS) reductase catalyzes reversibly the two-electron reduction of APS to sulfite and AMP. Found in several bacterial lineages and in Archaeoglobales, APS reductase is a heterodimer composed of an alpha subunit containing a noncovalently bound FAD, and a beta subunit containing two [4Fe-4S] clusters. Described by this model is the alpha subunit of APS reductase, sharing common evolutionary origin with fumarate reductase/succinate dehydrogenase flavoproteins.

>COG1053 SdhA Succinate dehydrogenase/fumarate reductase, flavoprotein subunit [Energy production and conversion]

Probab=96.34  E-value=0.0045  Score=64.36  Aligned_cols=38  Identities=29%  Similarity=0.437  Sum_probs=33.8

Q ss_pred             CCCCCcEEEEcCcHHHHHHHHHHHHcCCCCCcEEEEcCCCC
Q 012165           48 ANENREFVIVGGGNAAGYAARTFVEHGMADGRLCIVSKEAY   88 (469)
Q Consensus        48 ~~~~~~vvIIGgG~AGl~aA~~L~~~g~~~~~V~vie~~~~   88 (469)
                      ...++||||||||.||+.||.++++.|.   +|.|+|+.+.
T Consensus         3 ~~~~~DvvVIG~G~AGl~AAi~aa~~g~---~V~l~~K~~~   40 (562)
T COG1053           3 TIHEFDVVVIGGGGAGLRAAIEAAEAGL---KVALLSKAPP   40 (562)
T ss_pred             ccccCCEEEECCcHHHHHHHHHHHhcCC---cEEEEEcccc
Confidence            4557899999999999999999999986   7999998764

>PLN02815 L-aspartate oxidase

Probab=96.26  E-value=0.0061  Score=64.12  Aligned_cols=54  Identities=26%  Similarity=0.340  Sum_probs=37.1

Q ss_pred             CCCEEeCCCCCCCCCceEEeccccccCCccCCcccccchHHHHHHHHHHHHHHHh
Q 012165          302 VGGIQVDGQFRTRMPGIFAIGDVAAFPLKMYDRTARVEHVDHARQSAQHCIKALL  356 (469)
Q Consensus       302 ~g~i~Vd~~~~t~~~~Vfa~GD~a~~~~~~~~~~~~~~~~~~A~~~a~~~a~~i~  356 (469)
                      -|||.||.+.||++|++||+|+|+.......++.. -.+...+...|+.+++++.
T Consensus       377 ~GGi~vD~~~~t~IpGLyAaGE~a~~G~hGanrl~-gnsl~e~lvfGr~Ag~~aa  430 (594)
T PLN02815        377 CGGVRTGLQGETNVQGLYAAGEVACTGLHGANRLA-SNSLLEALVFARRAVQPSI  430 (594)
T ss_pred             CCCeeECCCCceecCCEEecccccccCCCCCCcch-hhHHHHHHHHHHHHHHHHH
Confidence            58999999999999999999999852111111111 2245567777777777765

>PF13454 NAD_binding_9: FAD-NAD(P)-binding

Probab=96.20  E-value=0.033  Score=47.88  Aligned_cols=42  Identities=29%  Similarity=0.501  Sum_probs=32.0

Q ss_pred             cCcEEE-cCCeEEEEEeCCCCcEEEEEcCCCCEEeCCEEEEccCC
Q 012165          243 NGVKFV-KGASIKNLEAGSDGRVAAVKLEDGSTIDADTIVIGIGA  286 (469)
Q Consensus       243 ~gV~~~-~~~~v~~i~~~~~~~v~~v~~~~g~~i~~D~vi~a~G~  286 (469)
                      .|+++. ...+|..+...+++.  .+.+++|..+.+|.||+|+|.
T Consensus       113 ~~i~v~~~~~~V~~i~~~~~~~--~v~~~~g~~~~~d~VvLa~Gh  155 (156)
T PF13454_consen  113 AGITVRHVRAEVVDIRRDDDGY--RVVTADGQSIRADAVVLATGH  155 (156)
T ss_pred             CCcEEEEEeeEEEEEEEcCCcE--EEEECCCCEEEeCEEEECCCC
Confidence            355543 245888888765553  578899999999999999995

>TIGR02023 BchP-ChlP geranylgeranyl reductase

Probab=96.20  E-value=0.031  Score=55.92  Aligned_cols=78  Identities=26%  Similarity=0.426  Sum_probs=56.8

Q ss_pred             eEEEEcCChHHHHHHHHHHhCCCeEe------------------------------------------------------
Q 012165          209 KVVVVGGGYIGMEVAAAAVGWKLDTT------------------------------------------------------  234 (469)
Q Consensus       209 ~vvVvG~G~~g~e~A~~l~~~g~~v~------------------------------------------------------  234 (469)
                      +|+|||+|+.|+-+|..|++.|.+|.                                                      
T Consensus         2 DVvIVGaGpAG~~aA~~La~~G~~V~l~E~~~~~~~~cg~~i~~~~l~~l~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~   81 (388)
T TIGR02023         2 DVAVIGGGPSGATAAETLARAGIETILLERALSNIKPCGGAIPPCLIEEFDIPDSLIDRRVTQMRMISPSRVPIKVTIPS   81 (388)
T ss_pred             eEEEECCCHHHHHHHHHHHhCCCcEEEEECCCCCcCcCcCCcCHhhhhhcCCchHHHhhhcceeEEEcCCCceeeeccCC
Confidence            58999999999999999999887765                                                      


Q ss_pred             ---------------eeHHHHHHcCcEEEcCCeEEEEEeCCCCcEEEEEcCC------C--CEEeCCEEEEccCCccC
Q 012165          235 ---------------RYEQLYQQNGVKFVKGASIKNLEAGSDGRVAAVKLED------G--STIDADTIVIGIGAKPT  289 (469)
Q Consensus       235 ---------------~~~~~l~~~gV~~~~~~~v~~i~~~~~~~v~~v~~~~------g--~~i~~D~vi~a~G~~p~  289 (469)
                                     .+.+...+.|++++.+ .++++..+++ .+ .+.+.+      |  .++.+|+||.|.|....
T Consensus        82 ~~~~~~~~~r~~fd~~L~~~a~~~G~~v~~~-~v~~v~~~~~-~~-~v~~~~~~~~~~~~~~~i~a~~VI~AdG~~S~  156 (388)
T TIGR02023        82 EDGYVGMVRREVFDSYLRERAQKAGAELIHG-LFLKLERDRD-GV-TLTYRTPKKGAGGEKGSVEADVVIGADGANSP  156 (388)
T ss_pred             CCCceEeeeHHHHHHHHHHHHHhCCCEEEee-EEEEEEEcCC-eE-EEEEEeccccCCCcceEEEeCEEEECCCCCcH
Confidence                           1233345679998765 5888875433 33 354442      2  47999999999997653

This model represents a group of geranylgeranyl reductases specific for the biosyntheses of bacteriochlorophyll and chlorophyll. It is unclear whether the processes of isoprenoid ligation to the chlorin ring and reduction of the geranylgeranyl chain to a phytyl chain are necessarily ordered the same way in all species (see introduction to ).

>TIGR02028 ChlP geranylgeranyl reductase

Probab=96.19  E-value=0.034  Score=55.79  Aligned_cols=26  Identities=35%  Similarity=0.472  Sum_probs=23.6

Q ss_pred             eEEEEcCChHHHHHHHHHHhCCCeEe
Q 012165          209 KVVVVGGGYIGMEVAAAAVGWKLDTT  234 (469)
Q Consensus       209 ~vvVvG~G~~g~e~A~~l~~~g~~v~  234 (469)
                      +|+|||+|+.|+-+|..|++.|.+|.
T Consensus         2 ~VvIVGaGPAG~~aA~~la~~G~~V~   27 (398)
T TIGR02028         2 RVAVVGGGPAGASAAETLASAGIQTF   27 (398)
T ss_pred             eEEEECCcHHHHHHHHHHHhCCCcEE
Confidence            68999999999999999999888775

This model represents the reductase which acts reduces the geranylgeranyl group to the phytyl group in the side chain of chlorophyll. It is unclear whether the enzyme has a preference for acting before or after the attachment of the side chain to chlorophyllide a by chlorophyll synthase. This clade is restricted to plants and cyanobacteria to separate it from the homologues which act in the biosynthesis of bacteriochlorophyll.

>PRK11445 putative oxidoreductase; Provisional

Probab=96.19  E-value=0.033  Score=54.87  Aligned_cols=46  Identities=24%  Similarity=0.263  Sum_probs=34.4

Q ss_pred             HcCcEEEcCCeEEEEEeCCCCcEEEEEc-CCCC--EEeCCEEEEccCCccC
Q 012165          242 QNGVKFVKGASIKNLEAGSDGRVAAVKL-EDGS--TIDADTIVIGIGAKPT  289 (469)
Q Consensus       242 ~~gV~~~~~~~v~~i~~~~~~~v~~v~~-~~g~--~i~~D~vi~a~G~~p~  289 (469)
                      +.|++++.++.++.++..+++ + .+.+ .+|+  ++.+|+||.|.|....
T Consensus       110 ~~gv~v~~~~~v~~i~~~~~~-~-~v~~~~~g~~~~i~a~~vV~AdG~~S~  158 (351)
T PRK11445        110 PASVEVYHNSLCRKIWREDDG-Y-HVIFRADGWEQHITARYLVGADGANSM  158 (351)
T ss_pred             hcCCEEEcCCEEEEEEEcCCE-E-EEEEecCCcEEEEEeCEEEECCCCCcH
Confidence            467899999999999865444 2 3443 5664  6899999999998754

>TIGR01989 COQ6 Ubiquinone biosynthesis mono0xygenase COQ6

Probab=96.19  E-value=0.03  Score=56.95  Aligned_cols=53  Identities=17%  Similarity=0.274  Sum_probs=39.4

Q ss_pred             HHHHHc---CcEEEcCCeEEEEEeC-----CCCcEEEEEcCCCCEEeCCEEEEccCCccCC
Q 012165          238 QLYQQN---GVKFVKGASIKNLEAG-----SDGRVAAVKLEDGSTIDADTIVIGIGAKPTV  290 (469)
Q Consensus       238 ~~l~~~---gV~~~~~~~v~~i~~~-----~~~~v~~v~~~~g~~i~~D~vi~a~G~~p~~  290 (469)
                      +.+++.   +++++.++++.+++..     +++.-..|.+.+|+++.+|+||-|-|.....
T Consensus       125 ~~~~~~~~~~v~i~~~~~v~~i~~~~~~~~~~~~~v~v~~~~g~~i~a~llVgADG~~S~v  185 (437)
T TIGR01989       125 NRLQEYNGDNVKILNPARLISVTIPSKYPNDNSNWVHITLSDGQVLYTKLLIGADGSNSNV  185 (437)
T ss_pred             HHHHhCCCCCeEEecCCeeEEEEeccccccCCCCceEEEEcCCCEEEeeEEEEecCCCChh
Confidence            334444   4999999999999632     1222236888999999999999999997653

This model represents the monooxygenase responsible for the 4-hydroxylateion of the phenol ring in the aerobic biosynthesis of ubiquinone

>COG3634 AhpF Alkyl hydroperoxide reductase, large subunit [Posttranslational modification, protein turnover, chaperones]

Probab=96.15  E-value=0.0099  Score=56.25  Aligned_cols=83  Identities=29%  Similarity=0.397  Sum_probs=66.9

Q ss_pred             cCCeEEEEcCChHHHHHHHHHHhCCCeEe--------------------------------eeHHHHHHcCcEEEcCCeE
Q 012165          206 KAKKVVVVGGGYIGMEVAAAAVGWKLDTT--------------------------------RYEQLYQQNGVKFVKGASI  253 (469)
Q Consensus       206 ~~~~vvVvG~G~~g~e~A~~l~~~g~~v~--------------------------------~~~~~l~~~gV~~~~~~~v  253 (469)
                      .+-.|+|||||+.|...|-+.++.|.+.-                                .+++..++..|.+....+.
T Consensus       210 ~~yDVLvVGgGPAgaaAAiYaARKGiRTGl~aerfGGQvldT~~IENfIsv~~teGpkl~~ale~Hv~~Y~vDimn~qra  289 (520)
T COG3634         210 DAYDVLVVGGGPAGAAAAIYAARKGIRTGLVAERFGGQVLDTMGIENFISVPETEGPKLAAALEAHVKQYDVDVMNLQRA  289 (520)
T ss_pred             CCceEEEEcCCcchhHHHHHHHhhcchhhhhhhhhCCeeccccchhheeccccccchHHHHHHHHHHhhcCchhhhhhhh
Confidence            34589999999999999999998876542                                5567777888888877777


Q ss_pred             EEEEeC-CCCcEEEEEcCCCCEEeCCEEEEccCCcc
Q 012165          254 KNLEAG-SDGRVAAVKLEDGSTIDADTIVIGIGAKP  288 (469)
Q Consensus       254 ~~i~~~-~~~~v~~v~~~~g~~i~~D~vi~a~G~~p  288 (469)
                      +++++. ..+....|++++|..+++..+|+++|.+-
T Consensus       290 ~~l~~a~~~~~l~ev~l~nGavLkaktvIlstGArW  325 (520)
T COG3634         290 SKLEPAAVEGGLIEVELANGAVLKARTVILATGARW  325 (520)
T ss_pred             hcceecCCCCccEEEEecCCceeccceEEEecCcch
Confidence            777763 23445689999999999999999999764

>PLN03000 amine oxidase

Probab=96.14  E-value=0.0078  Score=64.98  Aligned_cols=39  Identities=23%  Similarity=0.386  Sum_probs=35.0

Q ss_pred             CCCCcEEEEcCcHHHHHHHHHHHHcCCCCCcEEEEcCCCCCC
Q 012165           49 NENREFVIVGGGNAAGYAARTFVEHGMADGRLCIVSKEAYAP   90 (469)
Q Consensus        49 ~~~~~vvIIGgG~AGl~aA~~L~~~g~~~~~V~vie~~~~~~   90 (469)
                      ...++|+|||||++|+.+|..|.+.|+   +|+|+|+.+..+
T Consensus       182 ~~~~~VvIIGaG~aGL~aA~~L~~~G~---~V~VlE~~~riG  220 (881)
T PLN03000        182 SSKSSVVIVGAGLSGLAAARQLMRFGF---KVTVLEGRKRPG  220 (881)
T ss_pred             CCCCCEEEECccHHHHHHHHHHHHCCC---cEEEEEccCcCC
Confidence            456899999999999999999999987   799999988765

>PRK12809 putative oxidoreductase Fe-S binding subunit; Reviewed

Probab=96.13  E-value=0.0071  Score=64.54  Aligned_cols=73  Identities=22%  Similarity=0.424  Sum_probs=55.4

Q ss_pred             cCCeEEEEcCChHHHHHHHHHHhCCCeEe---------------------------eeHHHHHHcCcEEEcCCeEEEEEe
Q 012165          206 KAKKVVVVGGGYIGMEVAAAAVGWKLDTT---------------------------RYEQLYQQNGVKFVKGASIKNLEA  258 (469)
Q Consensus       206 ~~~~vvVvG~G~~g~e~A~~l~~~g~~v~---------------------------~~~~~l~~~gV~~~~~~~v~~i~~  258 (469)
                      .+++|+|||+|+.|+..|..|++.|.+|+                           ...+.+++.||++++++.+..   
T Consensus       309 ~~kkVaIIG~GpaGl~aA~~L~~~G~~Vtv~e~~~~~GG~l~~gip~~~l~~~~~~~~~~~~~~~Gv~~~~~~~v~~---  385 (639)
T PRK12809        309 RSEKVAVIGAGPAGLGCADILARAGVQVDVFDRHPEIGGMLTFGIPPFKLDKTVLSQRREIFTAMGIDFHLNCEIGR---  385 (639)
T ss_pred             CCCEEEEECcCHHHHHHHHHHHHcCCcEEEEeCCCCCCCeeeccCCcccCCHHHHHHHHHHHHHCCeEEEcCCccCC---
Confidence            47899999999999999999999999987                           124567888999999875521   


Q ss_pred             CCCCcEEEEEcCCCCEEeCCEEEEccCCccC
Q 012165          259 GSDGRVAAVKLEDGSTIDADTIVIGIGAKPT  289 (469)
Q Consensus       259 ~~~~~v~~v~~~~g~~i~~D~vi~a~G~~p~  289 (469)
                             .+.+.+ ....+|.||+|+|..+.
T Consensus       386 -------~~~~~~-l~~~~DaV~latGa~~~  408 (639)
T PRK12809        386 -------DITFSD-LTSEYDAVFIGVGTYGM  408 (639)
T ss_pred             -------cCCHHH-HHhcCCEEEEeCCCCCC
Confidence                   112222 13468999999998653

>PRK13800 putative oxidoreductase/HEAT repeat-containing protein; Provisional

Probab=96.10  E-value=0.0058  Score=67.77  Aligned_cols=36  Identities=31%  Similarity=0.510  Sum_probs=32.2

Q ss_pred             CCCcEEEEcCcHHHHHHHHHHHHcCCCCCcEEEEcCCCC
Q 012165           50 ENREFVIVGGGNAAGYAARTFVEHGMADGRLCIVSKEAY   88 (469)
Q Consensus        50 ~~~~vvIIGgG~AGl~aA~~L~~~g~~~~~V~vie~~~~   88 (469)
                      ..+||||||||.||++||.++++.|.   +|+|+|+.+.
T Consensus        12 ~~~DVlVVG~G~AGl~AAl~Aa~~G~---~V~lleK~~~   47 (897)
T PRK13800         12 LDCDVLVIGGGTAGTMAALTAAEHGA---NVLLLEKAHV   47 (897)
T ss_pred             eecCEEEECcCHHHHHHHHHHHHCCC---eEEEEecccc
Confidence            45799999999999999999999886   7999998764

>PRK12845 3-ketosteroid-delta-1-dehydrogenase; Reviewed

Probab=96.05  E-value=0.0086  Score=62.74  Aligned_cols=40  Identities=28%  Similarity=0.395  Sum_probs=34.6

Q ss_pred             CCCCcEEEEcCcHHHHHHHHHHHHcCCCCCcEEEEcCCCCCCCC
Q 012165           49 NENREFVIVGGGNAAGYAARTFVEHGMADGRLCIVSKEAYAPYE   92 (469)
Q Consensus        49 ~~~~~vvIIGgG~AGl~aA~~L~~~g~~~~~V~vie~~~~~~~~   92 (469)
                      ...+||||||+| +|++||.++++.|.   +|+|||+.+.....
T Consensus        14 d~e~DvvvvG~G-~G~~aA~~a~~~G~---~v~v~Ek~~~~GG~   53 (564)
T PRK12845         14 DTTVDLLVVGSG-TGMAAALAAHELGL---SVLIVEKSSYVGGS   53 (564)
T ss_pred             CceeCEEEECCc-HHHHHHHHHHHCCC---cEEEEecCCCCcCc
Confidence            447899999999 89999999999987   79999998766544

>PRK08401 L-aspartate oxidase; Provisional

Probab=96.05  E-value=0.036  Score=56.83  Aligned_cols=49  Identities=29%  Similarity=0.466  Sum_probs=35.0

Q ss_pred             HHHHHHcCcEEEcCCeEEEEEeCCCCcEEEEEcCCCCEEeCCEEEEccCCcc
Q 012165          237 EQLYQQNGVKFVKGASIKNLEAGSDGRVAAVKLEDGSTIDADTIVIGIGAKP  288 (469)
Q Consensus       237 ~~~l~~~gV~~~~~~~v~~i~~~~~~~v~~v~~~~g~~i~~D~vi~a~G~~p  288 (469)
                      .+.+++.||+++.+ .+..+.. +++++.++.. +++.+.++.||+|+|-..
T Consensus       127 ~~~~~~~gv~i~~~-~v~~l~~-~~g~v~Gv~~-~g~~i~a~~VVLATGG~~  175 (466)
T PRK08401        127 YKHARELGVNFIRG-FAEELAI-KNGKAYGVFL-DGELLKFDATVIATGGFS  175 (466)
T ss_pred             HHHHHhcCCEEEEe-EeEEEEe-eCCEEEEEEE-CCEEEEeCeEEECCCcCc
Confidence            34456678888765 6777764 3566666665 566799999999999754

>PF00890 FAD_binding_2: FAD binding domain of the Pfam family

Probab=96.04  E-value=0.029  Score=56.67  Aligned_cols=26  Identities=35%  Similarity=0.500  Sum_probs=22.2

Q ss_pred             eEEEEcCChHHHHHHHHHHhCCCeEe
Q 012165          209 KVVVVGGGYIGMEVAAAAVGWKLDTT  234 (469)
Q Consensus       209 ~vvVvG~G~~g~e~A~~l~~~g~~v~  234 (469)
                      .|+|||+|..|+-.|..+++.|.+|.
T Consensus         1 DVvVIG~G~AGl~AA~~Aae~G~~V~   26 (417)
T PF00890_consen    1 DVVVIGGGLAGLAAAIEAAEAGAKVL   26 (417)
T ss_dssp             SEEEE-SSHHHHHHHHHHHHTTT-EE
T ss_pred             CEEEECCCHHHHHHHHHHhhhcCeEE
Confidence            38999999999999999999999885

; InterPro: IPR003953 In bacteria two distinct, membrane-bound, enzyme complexes are responsible for the interconversion of fumarate and succinate (1.3.99.1 from EC): fumarate reductase (Frd) is used in anaerobic growth, and succinate dehydrogenase (Sdh) is used in aerobic growth. Both complexes consist of two main components: a membrane-extrinsic component composed of a FAD-binding flavoprotein and an iron-sulphur protein; and an hydrophobic component composed of a membrane anchor protein and/or a cytochrome B. In eukaryotes mitochondrial succinate dehydrogenase (ubiquinone) (1.3.5.1 from EC) is an enzyme composed of two subunits: a FAD flavoprotein and and iron-sulphur protein. The flavoprotein subunit is a protein of about 60 to 70 Kd to which FAD is covalently bound to a histidine residue which is located in the N-terminal section of the protein []. The sequence around that histidine is well conserved in Frd and Sdh from various bacterial and eukaryotic species []. This family includes members that bind FAD such as the flavoprotein subunits from succinate and fumarate dehydrogenase, aspartate oxidase and the alpha subunit of adenylylsulphate reductase. ; GO: 0009055 electron carrier activity, 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 2BS4_A 2BS3_A 2BS2_A 1E7P_J 1QLB_A 1KNR_A 1KNP_A 1CHU_A 2E5V_A 3AEF_A ....

>PRK07804 L-aspartate oxidase; Provisional

Probab=96.02  E-value=0.036  Score=57.92  Aligned_cols=49  Identities=24%  Similarity=0.376  Sum_probs=36.2

Q ss_pred             HHHHcCcEEEcCCeEEEEEeCCCCcEEEEEcC-------CC-CEEeCCEEEEccCCc
Q 012165          239 LYQQNGVKFVKGASIKNLEAGSDGRVAAVKLE-------DG-STIDADTIVIGIGAK  287 (469)
Q Consensus       239 ~l~~~gV~~~~~~~v~~i~~~~~~~v~~v~~~-------~g-~~i~~D~vi~a~G~~  287 (469)
                      .+++.||+++.++.+.++..++++++.++...       ++ ..+.++.||+|+|-.
T Consensus       153 ~~~~~gV~i~~~~~v~~Li~~~~g~v~Gv~~~~~~~~~~~g~~~i~Ak~VIlATGG~  209 (541)
T PRK07804        153 AVRADPLDIREHALALDLLTDGTGAVAGVTLHVLGEGSPDGVGAVHAPAVVLATGGL  209 (541)
T ss_pred             HHHhCCCEEEECeEeeeeEEcCCCeEEEEEEEeccCCCCCcEEEEEcCeEEECCCCC
Confidence            34566899999999999876545677776553       33 368999999999863

>PRK08274 tricarballylate dehydrogenase; Validated

Probab=96.01  E-value=0.038  Score=56.75  Aligned_cols=48  Identities=27%  Similarity=0.452  Sum_probs=36.7

Q ss_pred             HHHHHcCcEEEcCCeEEEEEeCCCCcEEEEEcC--CC--CEEeCCEEEEccCC
Q 012165          238 QLYQQNGVKFVKGASIKNLEAGSDGRVAAVKLE--DG--STIDADTIVIGIGA  286 (469)
Q Consensus       238 ~~l~~~gV~~~~~~~v~~i~~~~~~~v~~v~~~--~g--~~i~~D~vi~a~G~  286 (469)
                      +.+++.|++++.++.++++..+ ++++.+|...  ++  ..+.++.||+|+|-
T Consensus       139 ~~~~~~gv~i~~~t~v~~l~~~-~g~v~gv~~~~~~g~~~~i~a~~VIlAtGg  190 (466)
T PRK08274        139 RSAERLGVEIRYDAPVTALELD-DGRFVGARAGSAAGGAERIRAKAVVLAAGG  190 (466)
T ss_pred             HHHHHCCCEEEcCCEEEEEEec-CCeEEEEEEEccCCceEEEECCEEEECCCC
Confidence            3456779999999999999853 6777777653  33  36899999999984

>PLN02464 glycerol-3-phosphate dehydrogenase

Probab=95.93  E-value=0.051  Score=57.82  Aligned_cols=28  Identities=39%  Similarity=0.458  Sum_probs=25.7

Q ss_pred             CCeEEEEcCChHHHHHHHHHHhCCCeEe
Q 012165          207 AKKVVVVGGGYIGMEVAAAAVGWKLDTT  234 (469)
Q Consensus       207 ~~~vvVvG~G~~g~e~A~~l~~~g~~v~  234 (469)
                      .-.|+|||||.+|+-+|..|+.+|.+|.
T Consensus        71 ~~DVvVIGGGi~Ga~~A~~lA~rGl~V~   98 (627)
T PLN02464         71 PLDVLVVGGGATGAGVALDAATRGLRVG   98 (627)
T ss_pred             ccCEEEECCCHHHHHHHHHHHhCCCEEE
Confidence            3579999999999999999999999886

>PTZ00306 NADH-dependent fumarate reductase; Provisional

Probab=95.93  E-value=0.0099  Score=67.68  Aligned_cols=38  Identities=29%  Similarity=0.355  Sum_probs=33.8

Q ss_pred             CCCCcEEEEcCcHHHHHHHHHHHHcCCCCCcEEEEcCCCCC
Q 012165           49 NENREFVIVGGGNAAGYAARTFVEHGMADGRLCIVSKEAYA   89 (469)
Q Consensus        49 ~~~~~vvIIGgG~AGl~aA~~L~~~g~~~~~V~vie~~~~~   89 (469)
                      +...||||||+|.||++||.++++.|.   +|+|+|+.+..
T Consensus       407 t~~~DVvVVG~G~AGl~AAi~Aae~Ga---~VivlEK~~~~  444 (1167)
T PTZ00306        407 SLPARVIVVGGGLAGCSAAIEAASCGA---QVILLEKEAKL  444 (1167)
T ss_pred             CCCCCEEEECCCHHHHHHHHHHHHCCC---cEEEEEccCCC
Confidence            346899999999999999999999986   79999998754

>TIGR01811 sdhA_Bsu succinate dehydrogenase or fumarate reductase, flavoprotein subunit, Bacillus subtilis subgroup

Probab=95.91  E-value=0.0069  Score=64.04  Aligned_cols=31  Identities=32%  Similarity=0.463  Sum_probs=28.9

Q ss_pred             EEEEcCcHHHHHHHHHHHHcCCCCCcEEEEcCCC
Q 012165           54 FVIVGGGNAAGYAARTFVEHGMADGRLCIVSKEA   87 (469)
Q Consensus        54 vvIIGgG~AGl~aA~~L~~~g~~~~~V~vie~~~   87 (469)
                      |||||+|.||++||.++++.|.   +|+|+|+.+
T Consensus         1 VlVVG~G~AGl~AAl~Aae~G~---~VilleK~~   31 (603)
T TIGR01811         1 VIVVGTGLAGGMAAAKLAELGY---HVKLFSYVD   31 (603)
T ss_pred             CEEECccHHHHHHHHHHHHcCC---CEEEEEecC
Confidence            6999999999999999999886   799999986

This model represents the succinate dehydrogenase flavoprotein subunit as found in the low-GC Gram-positive bacteria and a few other lineages. This enzyme may act in a complete or partial TCA cycle, or act in the opposite direction as fumarate reductase. In some but not all species, succinate dehydrogenase and fumarate reductase may be encoded as separate isozymes.

>TIGR02462 pyranose_ox pyranose oxidase

Probab=95.90  E-value=0.0097  Score=61.53  Aligned_cols=59  Identities=17%  Similarity=0.263  Sum_probs=43.5

Q ss_pred             HHcCcEEEcCCeEEEEEeCCC--CcEEEEEcC---CCC--EEeCCEEEEccCCccCCchhhhcCCc
Q 012165          241 QQNGVKFVKGASIKNLEAGSD--GRVAAVKLE---DGS--TIDADTIVIGIGAKPTVSPFERVGLN  299 (469)
Q Consensus       241 ~~~gV~~~~~~~v~~i~~~~~--~~v~~v~~~---~g~--~i~~D~vi~a~G~~p~~~~~~~~gl~  299 (469)
                      +..++++++++.|.+|..+++  +++++|...   +|+  ++.++.||+|.|..-+..+|-.++..
T Consensus       225 ~~~n~~l~~~a~v~~i~~d~~~~~~v~~v~~~d~~~g~~~~v~A~~vVLAagaIetpRLLL~S~~~  290 (544)
T TIGR02462       225 PSERFTLLTNHRCTRLVRNETNESEIEAALVRDLLSGDRFEIKADVYVLACGAVHNPQILVNSGFG  290 (544)
T ss_pred             cCCCEEEEcCCEEEEEEeCCCCCceeEEEEEEECCCCcEEEEECCEEEEccCchhhHHHHHhCCCC
Confidence            366699999999999987644  456666443   343  58999999999988776776555443

Pyranose oxidase (also called glucose 2-oxidase) converts D-glucose and molecular oxygen to 2-dehydro-D-glucose and hydrogen peroxide. Peroxide production is believed to be important to the wood rot fungi in which this enzyme is found for lignin degradation.

>COG0665 DadA Glycine/D-amino acid oxidases (deaminating) [Amino acid transport and metabolism]

Probab=95.87  E-value=0.056  Score=53.87  Aligned_cols=52  Identities=29%  Similarity=0.459  Sum_probs=38.0

Q ss_pred             eeHHHHHHcC-cEEEcCCeEEEEEeCCCCcEEEEEcCCCCEEeCCEEEEccCCccC
Q 012165          235 RYEQLYQQNG-VKFVKGASIKNLEAGSDGRVAAVKLEDGSTIDADTIVIGIGAKPT  289 (469)
Q Consensus       235 ~~~~~l~~~g-V~~~~~~~v~~i~~~~~~~v~~v~~~~g~~i~~D~vi~a~G~~p~  289 (469)
                      .+.+.+++.| ..+..++.+..++.. . ....|.+.+|+ +.+|.||+|+|...+
T Consensus       161 ~l~~~~~~~G~~~~~~~~~~~~~~~~-~-~~~~v~t~~g~-i~a~~vv~a~G~~~~  213 (387)
T COG0665         161 ALAAAAEELGVVIIEGGTPVTSLERD-G-RVVGVETDGGT-IEADKVVLAAGAWAG  213 (387)
T ss_pred             HHHHHHHhcCCeEEEccceEEEEEec-C-cEEEEEeCCcc-EEeCEEEEcCchHHH
Confidence            3455667788 455558888888743 2 45578888886 999999999996543

>PF02852 Pyr_redox_dim: Pyridine nucleotide-disulphide oxidoreductase, dimerisation domain; InterPro: IPR004099 This entry represents a dimerisation domain that is usually found at the C-terminal of both class I and class II oxidoreductases, as well as in NADH oxidases and peroxidases [, , ]

Probab=95.79  E-value=0.02  Score=45.98  Aligned_cols=56  Identities=16%  Similarity=0.235  Sum_probs=42.4

Q ss_pred             EEEEEEe--CCEEEEEEeecCChHHhHH-HHHHHhCCCCCChh--hhcCCCcHHHHHHHHH
Q 012165          405 IATFWID--SGKLKGVLVESGSPEEFQL-LPTLARSQPFVDKA--KLQQASSVEEALEIAR  460 (469)
Q Consensus       405 ~~~~~~~--~~~l~g~~~~~~~~~~~~~-~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~  460 (469)
                      +.|+.++  +++|+|+++++.++.++.. +..+++++.+++..  .+..+|++.|+++.|+
T Consensus        50 ~~Kli~d~~t~~IlGa~~vg~~a~e~I~~~~~ai~~~~t~~~l~~~~~~~Pt~se~~~~a~  110 (110)
T PF02852_consen   50 FVKLIFDKKTGRILGAQIVGPNASELINELALAIQNGLTVEDLADDIFYHPTFSEAIQEAA  110 (110)
T ss_dssp             EEEEEEETTTTBEEEEEEEETTHHHHHHHHHHHHHTTSBHHHHHTSBSSSTSTGHHHHHHH
T ss_pred             eeEEEEEeeccceeeeeeecCchHHHHHHHHHHHHcCCCHHHHhCCeeeCCChhHHHHHhC
Confidence            6677664  5999999998887766444 55567888887732  2467899999999986

; GO: 0016491 oxidoreductase activity, 0050660 flavin adenine dinucleotide binding, 0045454 cell redox homeostasis, 0055114 oxidation-reduction process, 0005737 cytoplasm; PDB: 3II4_B 2A8X_A 2BC0_B 2BC1_B 2W0H_A 2X50_B 2JK6_A 2YAU_A 2EQ9_E 2EQ6_B ....

>TIGR01812 sdhA_frdA_Gneg succinate dehydrogenase or fumarate reductase, flavoprotein subunitGram-negative/mitochondrial subgroup

Probab=95.79  E-value=0.058  Score=56.85  Aligned_cols=48  Identities=27%  Similarity=0.355  Sum_probs=36.9

Q ss_pred             HHHHcCcEEEcCCeEEEEEeCCCCcEEEEEc---CCCC--EEeCCEEEEccCCc
Q 012165          239 LYQQNGVKFVKGASIKNLEAGSDGRVAAVKL---EDGS--TIDADTIVIGIGAK  287 (469)
Q Consensus       239 ~l~~~gV~~~~~~~v~~i~~~~~~~v~~v~~---~~g~--~i~~D~vi~a~G~~  287 (469)
                      .+++.||+++.++.++++..+ ++++.++..   .+|+  .+.++.||+|+|-.
T Consensus       138 ~~~~~gv~i~~~~~v~~L~~~-~g~v~Gv~~~~~~~g~~~~i~Ak~VVlAtGG~  190 (566)
T TIGR01812       138 QCLKLGVSFFNEYFALDLIHD-DGRVRGVVAYDLKTGEIVFFRAKAVVLATGGY  190 (566)
T ss_pred             HHHHcCCEEEeccEEEEEEEe-CCEEEEEEEEECCCCcEEEEECCeEEECCCcc
Confidence            355679999999999998754 677766654   4564  58999999999964

This model represents the succinate dehydrogenase flavoprotein subunit as found in Gram-negative bacteria, mitochondria, and some Archaea. Mitochondrial forms interact with ubiquinone and are designated EC 1.3.5.1, but can be degraded to 1.3.99.1. Some isozymes in E. coli and other species run primarily in the opposite direction and are designated fumarate reductase.

>PRK07573 sdhA succinate dehydrogenase flavoprotein subunit; Reviewed

Probab=95.76  E-value=0.054  Score=57.73  Aligned_cols=46  Identities=24%  Similarity=0.376  Sum_probs=36.8

Q ss_pred             HHHcCcEEEcCCeEEEEEeCCCCcEEEEEcC---CCC--EEeCCEEEEccCC
Q 012165          240 YQQNGVKFVKGASIKNLEAGSDGRVAAVKLE---DGS--TIDADTIVIGIGA  286 (469)
Q Consensus       240 l~~~gV~~~~~~~v~~i~~~~~~~v~~v~~~---~g~--~i~~D~vi~a~G~  286 (469)
                      +++.||+++.++.+.++..+ ++++.+|...   +|+  .+.++.||+|||-
T Consensus       180 ~~~~gV~i~~~t~v~~Li~d-~g~V~GV~~~~~~~g~~~~i~AkaVVLATGG  230 (640)
T PRK07573        180 IAAGTVKMYTRTEMLDLVVV-DGRARGIVARNLVTGEIERHTADAVVLATGG  230 (640)
T ss_pred             HHhcCCEEEeceEEEEEEEe-CCEEEEEEEEECCCCcEEEEECCEEEECCCC
Confidence            45689999999999998753 5778787664   453  5899999999996

>TIGR00137 gid_trmFO tRNA:m(5)U-54 methyltransferase

Probab=95.75  E-value=0.01  Score=59.30  Aligned_cols=26  Identities=31%  Similarity=0.354  Sum_probs=24.7

Q ss_pred             eEEEEcCChHHHHHHHHHHhCCCeEe
Q 012165          209 KVVVVGGGYIGMEVAAAAVGWKLDTT  234 (469)
Q Consensus       209 ~vvVvG~G~~g~e~A~~l~~~g~~v~  234 (469)
                      +|+|||||..|+++|..|++.|.+|+
T Consensus         2 ~VvVIGgGlAGleaA~~LAr~G~~V~   27 (433)
T TIGR00137         2 PVHVIGGGLAGSEAAWQLAQAGVPVI   27 (433)
T ss_pred             CEEEECCCHHHHHHHHHHHhCCCcEE
Confidence            68999999999999999999999887

This model represents an orthologous set of proteins present in relatively few bacteria but very tightly conserved where it occurs. It is closely related to gidA (glucose-inhibited division protein A), which appears to be present in all complete eubacterial genomes so far and in Saccharomyces cerevisiae. It was designated gid but is now recognized as a tRNA:m(5)U-54 methyltransferase and is now designated trmFO.

>COG3573 Predicted oxidoreductase [General function prediction only]

Probab=95.75  E-value=0.015  Score=54.75  Aligned_cols=38  Identities=26%  Similarity=0.399  Sum_probs=33.7

Q ss_pred             CCCCcEEEEcCcHHHHHHHHHHHHcCCCCCcEEEEcCCCCC
Q 012165           49 NENREFVIVGGGNAAGYAARTFVEHGMADGRLCIVSKEAYA   89 (469)
Q Consensus        49 ~~~~~vvIIGgG~AGl~aA~~L~~~g~~~~~V~vie~~~~~   89 (469)
                      +...|++|||+|.|||.||.+|+..|.   +|+++|++...
T Consensus         3 ~~~~dvivvgaglaglvaa~elA~aG~---~V~ildQEgeq   40 (552)
T COG3573           3 GLTADVIVVGAGLAGLVAAAELADAGK---RVLILDQEGEQ   40 (552)
T ss_pred             cccccEEEECccHHHHHHHHHHHhcCc---eEEEEcccccc
Confidence            345799999999999999999999997   79999998753

>PRK13369 glycerol-3-phosphate dehydrogenase; Provisional

Probab=95.72  E-value=0.05  Score=56.43  Aligned_cols=48  Identities=19%  Similarity=0.202  Sum_probs=34.1

Q ss_pred             HHHcCcEEEcCCeEEEEEeCCCCcEEEEEcCCC----CEEeCCEEEEccCCccC
Q 012165          240 YQQNGVKFVKGASIKNLEAGSDGRVAAVKLEDG----STIDADTIVIGIGAKPT  289 (469)
Q Consensus       240 l~~~gV~~~~~~~v~~i~~~~~~~v~~v~~~~g----~~i~~D~vi~a~G~~p~  289 (469)
                      .++.|++++.++.|.++..+ ++. ..|.+.++    .++.++.||.|+|....
T Consensus       165 a~~~Ga~i~~~~~V~~i~~~-~~~-~~v~~~~~~g~~~~i~a~~VVnAaG~wa~  216 (502)
T PRK13369        165 AAERGATILTRTRCVSARRE-GGL-WRVETRDADGETRTVRARALVNAAGPWVT  216 (502)
T ss_pred             HHHCCCEEecCcEEEEEEEc-CCE-EEEEEEeCCCCEEEEEecEEEECCCccHH
Confidence            34568888888888888754 332 34555554    35899999999997543

>PLN00093 geranylgeranyl diphosphate reductase; Provisional

Probab=95.70  E-value=0.074  Score=54.20  Aligned_cols=28  Identities=29%  Similarity=0.366  Sum_probs=25.1

Q ss_pred             CCeEEEEcCChHHHHHHHHHHhCCCeEe
Q 012165          207 AKKVVVVGGGYIGMEVAAAAVGWKLDTT  234 (469)
Q Consensus       207 ~~~vvVvG~G~~g~e~A~~l~~~g~~v~  234 (469)
                      .-+|+|||+|+.|+-+|..|++.|.+|.
T Consensus        39 ~~DViIVGaGPAG~~aA~~LA~~G~~Vl   66 (450)
T PLN00093         39 KLRVAVIGGGPAGACAAETLAKGGIETF   66 (450)
T ss_pred             CCeEEEECCCHHHHHHHHHHHhCCCcEE
Confidence            3579999999999999999999998875

>PRK14106 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional

Probab=95.68  E-value=0.016  Score=59.24  Aligned_cols=36  Identities=14%  Similarity=0.314  Sum_probs=31.8

Q ss_pred             CCCCcEEEEcCcHHHHHHHHHHHHcCCCCCcEEEEcCCC
Q 012165           49 NENREFVIVGGGNAAGYAARTFVEHGMADGRLCIVSKEA   87 (469)
Q Consensus        49 ~~~~~vvIIGgG~AGl~aA~~L~~~g~~~~~V~vie~~~   87 (469)
                      .+.++++|+|+|..|+.+|..|++.|+   +|+++|...
T Consensus         3 ~~~k~v~iiG~g~~G~~~A~~l~~~G~---~V~~~d~~~   38 (450)
T PRK14106          3 LKGKKVLVVGAGVSGLALAKFLKKLGA---KVILTDEKE   38 (450)
T ss_pred             cCCCEEEEECCCHHHHHHHHHHHHCCC---EEEEEeCCc
Confidence            346889999999999999999999998   799988754

>TIGR01811 sdhA_Bsu succinate dehydrogenase or fumarate reductase, flavoprotein subunit, Bacillus subtilis subgroup

Probab=95.66  E-value=0.056  Score=57.23  Aligned_cols=44  Identities=18%  Similarity=0.284  Sum_probs=35.2

Q ss_pred             cCcEEEcCCeEEEEEeCCCCcEEEEEcC---CCC--EEeCCEEEEccCC
Q 012165          243 NGVKFVKGASIKNLEAGSDGRVAAVKLE---DGS--TIDADTIVIGIGA  286 (469)
Q Consensus       243 ~gV~~~~~~~v~~i~~~~~~~v~~v~~~---~g~--~i~~D~vi~a~G~  286 (469)
                      .||+++.++.+.++..++++++.+|...   +|+  .+.++.||+|||-
T Consensus       146 ~gV~i~~~t~v~~Li~dd~grV~GV~~~~~~~g~~~~i~AkaVVLATGG  194 (603)
T TIGR01811       146 GLVEKYEGWEMLDIIVVDGNRARGIIARNLVTGEIETHSADAVILATGG  194 (603)
T ss_pred             CCcEEEeCcEEEEEEEcCCCEEEEEEEEECCCCcEEEEEcCEEEECCCC
Confidence            4899999999999876556688888754   453  5889999999986

This model represents the succinate dehydrogenase flavoprotein subunit as found in the low-GC Gram-positive bacteria and a few other lineages. This enzyme may act in a complete or partial TCA cycle, or act in the opposite direction as fumarate reductase. In some but not all species, succinate dehydrogenase and fumarate reductase may be encoded as separate isozymes.

>PRK12771 putative glutamate synthase (NADPH) small subunit; Provisional

Probab=95.65  E-value=0.075  Score=55.97  Aligned_cols=96  Identities=25%  Similarity=0.322  Sum_probs=63.1

Q ss_pred             CCCCcEEEEcCcHHHHHHHHHHHHcCCCCCcEEEEcCCCCCCCCCCCCcccccCCCCCCCCCCCCCccccCCCCCCCCHh
Q 012165           49 NENREFVIVGGGNAAGYAARTFVEHGMADGRLCIVSKEAYAPYERPALTKGYLFPLDKKPARLPGFHTCVGSGGERQTPE  128 (469)
Q Consensus        49 ~~~~~vvIIGgG~AGl~aA~~L~~~g~~~~~V~vie~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  128 (469)
                      ...++|+|||+|..|+.++..+.+.+.  .+++|+.+.+...+  +..                           ....+
T Consensus       265 ~~gk~v~ViGgg~~a~d~a~~a~~lga--~~v~ii~r~~~~~~--~~~---------------------------~~~~~  313 (564)
T PRK12771        265 FLGKRVVVIGGGNTAMDAARTARRLGA--EEVTIVYRRTREDM--PAH---------------------------DEEIE  313 (564)
T ss_pred             CCCCCEEEECChHHHHHHHHHHHHcCC--CEEEEEEecCcccC--CCC---------------------------HHHHH
Confidence            346789999999999999998888873  36888765532100  000                           01122


Q ss_pred             HHHHCCcEEEeCCcEEEEeCCC-c-------EEEe----CCC---------eEEEeccEEeccCCCCC
Q 012165          129 WYKEKGIEMIYQDPVTSIDIEK-Q-------TLIT----NSG---------KLLKYGSLIVATGCTAS  175 (469)
Q Consensus       129 ~~~~~~i~~~~~~~v~~id~~~-~-------~v~~----~~g---------~~~~yd~lVlAtG~~~~  175 (469)
                      ...+.+++++.+..+..+..++ .       .+..    .+|         .++++|.||+|+|..|.
T Consensus       314 ~a~~~GVki~~~~~~~~i~~~~~~~~~v~~~~~~~~~~~~~g~~~~~~g~~~~i~~D~Vi~A~G~~p~  381 (564)
T PRK12771        314 EALREGVEINWLRTPVEIEGDENGATGLRVITVEKMELDEDGRPSPVTGEEETLEADLVVLAIGQDID  381 (564)
T ss_pred             HHHHcCCEEEecCCcEEEEcCCCCEEEEEEEEEEecccCCCCCeeecCCceEEEECCEEEECcCCCCc
Confidence            3456789988888888886543 1       1221    112         36999999999998764

>KOG0404 consensus Thioredoxin reductase [Posttranslational modification, protein turnover, chaperones]

Probab=95.63  E-value=0.033  Score=49.54  Aligned_cols=83  Identities=16%  Similarity=0.302  Sum_probs=58.1

Q ss_pred             CCeEEEEcCChHHHHHHHHHHhCCCeEe---------------------------------------eeHHHHHHcCcEE
Q 012165          207 AKKVVVVGGGYIGMEVAAAAVGWKLDTT---------------------------------------RYEQLYQQNGVKF  247 (469)
Q Consensus       207 ~~~vvVvG~G~~g~e~A~~l~~~g~~v~---------------------------------------~~~~~l~~~gV~~  247 (469)
                      ..+|+|||+|+.+.-.|.++++.-.+..                                       .+++.-++.|.++
T Consensus         8 ~e~v~IiGSGPAa~tAAiYaaraelkPllfEG~~~~~i~pGGQLtTTT~veNfPGFPdgi~G~~l~d~mrkqs~r~Gt~i   87 (322)
T KOG0404|consen    8 NENVVIIGSGPAAHTAAIYAARAELKPLLFEGMMANGIAPGGQLTTTTDVENFPGFPDGITGPELMDKMRKQSERFGTEI   87 (322)
T ss_pred             eeeEEEEccCchHHHHHHHHhhcccCceEEeeeeccCcCCCceeeeeeccccCCCCCcccccHHHHHHHHHHHHhhccee
Confidence            3589999999999999999887643332                                       4455666778888


Q ss_pred             EcCCeEEEEEeCCCCcEEEEEcCCCCEEeCCEEEEccCCccCCchh
Q 012165          248 VKGASIKNLEAGSDGRVAAVKLEDGSTIDADTIVIGIGAKPTVSPF  293 (469)
Q Consensus       248 ~~~~~v~~i~~~~~~~v~~v~~~~g~~i~~D~vi~a~G~~p~~~~~  293 (469)
                      ++. .|++++.  .+....+. .|.+.+.+|.||+|+|.....-.+
T Consensus        88 ~tE-tVskv~~--sskpF~l~-td~~~v~~~avI~atGAsAkRl~~  129 (322)
T KOG0404|consen   88 ITE-TVSKVDL--SSKPFKLW-TDARPVTADAVILATGASAKRLHL  129 (322)
T ss_pred             eee-ehhhccc--cCCCeEEE-ecCCceeeeeEEEecccceeeeec
Confidence            876 3666653  23333344 456689999999999987653333

>PRK12843 putative FAD-binding dehydrogenase; Reviewed

Probab=95.62  E-value=0.019  Score=60.46  Aligned_cols=60  Identities=22%  Similarity=0.339  Sum_probs=42.7

Q ss_pred             eeHHHHHHcCcEEEcCCeEEEEEeCCCCcEEEEEcCCC-C--EEeC-CEEEEccCCcc-CCchhhh
Q 012165          235 RYEQLYQQNGVKFVKGASIKNLEAGSDGRVAAVKLEDG-S--TIDA-DTIVIGIGAKP-TVSPFER  295 (469)
Q Consensus       235 ~~~~~l~~~gV~~~~~~~v~~i~~~~~~~v~~v~~~~g-~--~i~~-D~vi~a~G~~p-~~~~~~~  295 (469)
                      .+.+.+++.||+++.++.+.++..+ ++++.+|...++ +  .+.+ +.||+|+|--. |.+++++
T Consensus       226 aL~~~~~~~Gv~i~~~t~v~~Li~~-~g~V~GV~~~~~g~~~~i~A~~~VVlAtGg~~~n~em~~~  290 (578)
T PRK12843        226 RLLYSLRARGVRILTQTDVESLETD-HGRVIGATVVQGGVRRRIRARGGVVLATGGFNRHPQLRRE  290 (578)
T ss_pred             HHHHHHHhCCCEEEeCCEEEEEEee-CCEEEEEEEecCCeEEEEEccceEEECCCCcccCHHHHHH
Confidence            3456678899999999999998753 677878766543 2  4676 78999988654 4344443

>PLN02976 amine oxidase

Probab=95.58  E-value=0.017  Score=64.99  Aligned_cols=38  Identities=21%  Similarity=0.435  Sum_probs=33.9

Q ss_pred             CCCcEEEEcCcHHHHHHHHHHHHcCCCCCcEEEEcCCCCCC
Q 012165           50 ENREFVIVGGGNAAGYAARTFVEHGMADGRLCIVSKEAYAP   90 (469)
Q Consensus        50 ~~~~vvIIGgG~AGl~aA~~L~~~g~~~~~V~vie~~~~~~   90 (469)
                      ..++|+|||||++|+++|..|.+.|+   +|+|+|+.+..+
T Consensus       692 ~~~dV~IIGAG~AGLaAA~~L~~~G~---~V~VlEa~~~vG  729 (1713)
T PLN02976        692 DRKKIIVVGAGPAGLTAARHLQRQGF---SVTVLEARSRIG  729 (1713)
T ss_pred             CCCcEEEECchHHHHHHHHHHHHCCC---cEEEEeeccCCC
Confidence            45899999999999999999999987   799999987654

>PRK06567 putative bifunctional glutamate synthase subunit beta/2-polyprenylphenol hydroxylase; Validated

Probab=95.58  E-value=0.021  Score=62.25  Aligned_cols=33  Identities=15%  Similarity=0.179  Sum_probs=29.2

Q ss_pred             hcCCeEEEEcCChHHHHHHHHHHhCCCeEeeeH
Q 012165          205 EKAKKVVVVGGGYIGMEVAAAAVGWKLDTTRYE  237 (469)
Q Consensus       205 ~~~~~vvVvG~G~~g~e~A~~l~~~g~~v~~~~  237 (469)
                      ..+++|+|||+|+.|+.+|..|+..|.+|+.++
T Consensus       381 ~tgKKVaVVGaGPAGLsAA~~La~~Gh~Vtv~E  413 (1028)
T PRK06567        381 PTNYNILVTGLGPAGFSLSYYLLRSGHNVTAID  413 (1028)
T ss_pred             CCCCeEEEECcCHHHHHHHHHHHhCCCeEEEEc
Confidence            357899999999999999999999999998443

>KOG1298 consensus Squalene monooxygenase [Lipid transport and metabolism]

Probab=95.53  E-value=0.018  Score=55.36  Aligned_cols=39  Identities=21%  Similarity=0.417  Sum_probs=33.7

Q ss_pred             CCCCCcEEEEcCcHHHHHHHHHHHHcCCCCCcEEEEcCCCCC
Q 012165           48 ANENREFVIVGGGNAAGYAARTFVEHGMADGRLCIVSKEAYA   89 (469)
Q Consensus        48 ~~~~~~vvIIGgG~AGl~aA~~L~~~g~~~~~V~vie~~~~~   89 (469)
                      .....||+|||+|.+|-+.|..|.+.|-   +|+|||++-..
T Consensus        42 ~~~~~DvIIVGAGV~GsaLa~~L~kdGR---rVhVIERDl~E   80 (509)
T KOG1298|consen   42 NDGAADVIIVGAGVAGSALAYALAKDGR---RVHVIERDLSE   80 (509)
T ss_pred             cCCcccEEEECCcchHHHHHHHHhhCCc---EEEEEeccccc
Confidence            3456899999999999999999999986   89999987543

>KOG2852 consensus Possible oxidoreductase [General function prediction only]

Probab=95.49  E-value=0.017  Score=53.30  Aligned_cols=51  Identities=25%  Similarity=0.363  Sum_probs=35.8

Q ss_pred             eeHHHHHHcCcEEEcCCeEEEEEeCCCCcEEEEEcC---C-CCEEeCCEEEEccCCc
Q 012165          235 RYEQLYQQNGVKFVKGASIKNLEAGSDGRVAAVKLE---D-GSTIDADTIVIGIGAK  287 (469)
Q Consensus       235 ~~~~~l~~~gV~~~~~~~v~~i~~~~~~~v~~v~~~---~-g~~i~~D~vi~a~G~~  287 (469)
                      .+.+..+..||+++.+ +|.++. ++.+++..+...   + ....+.+.+|++.|.-
T Consensus       153 i~sea~k~~~V~lv~G-kv~ev~-dEk~r~n~v~~ae~~~ti~~~d~~~ivvsaGPW  207 (380)
T KOG2852|consen  153 ILSEAEKRGGVKLVFG-KVKEVS-DEKHRINSVPKAEAEDTIIKADVHKIVVSAGPW  207 (380)
T ss_pred             HHHHHHhhcCeEEEEe-eeEEee-cccccccccchhhhcCceEEeeeeEEEEecCCC
Confidence            4455666677999998 588886 456666555544   2 3567899999999854

>KOG2960 consensus Protein involved in thiamine biosynthesis and DNA damage tolerance [General function prediction only]

Probab=95.43  E-value=0.004  Score=54.67  Aligned_cols=38  Identities=26%  Similarity=0.350  Sum_probs=33.2

Q ss_pred             CCcEEEEcCcHHHHHHHHHHHHcCCCCCcEEEEcCCCCC
Q 012165           51 NREFVIVGGGNAAGYAARTFVEHGMADGRLCIVSKEAYA   89 (469)
Q Consensus        51 ~~~vvIIGgG~AGl~aA~~L~~~g~~~~~V~vie~~~~~   89 (469)
                      ..||||||+|.|||+||+.+.++.+ +.+|.+||..-.+
T Consensus        76 esDvviVGAGSaGLsAAY~I~~~rP-dlkvaIIE~SVaP  113 (328)
T KOG2960|consen   76 ESDVVIVGAGSAGLSAAYVIAKNRP-DLKVAIIESSVAP  113 (328)
T ss_pred             ccceEEECCCccccceeeeeeccCC-CceEEEEEeeecC
Confidence            4699999999999999999998764 8899999987654

>COG3380 Predicted NAD/FAD-dependent oxidoreductase [General function prediction only]

Probab=95.40  E-value=0.031  Score=51.31  Aligned_cols=82  Identities=18%  Similarity=0.288  Sum_probs=59.9

Q ss_pred             eEEEEcCChHHHHHHHHHHhCCCeEe------------------------------------------------------
Q 012165          209 KVVVVGGGYIGMEVAAAAVGWKLDTT------------------------------------------------------  234 (469)
Q Consensus       209 ~vvVvG~G~~g~e~A~~l~~~g~~v~------------------------------------------------------  234 (469)
                      +|+|||+|..|+.+|..|+..|..++                                                      
T Consensus         3 siaIVGaGiAGl~aA~~L~~aG~~vtV~eKg~GvGGRlAtRRl~~g~~DhGAqYfk~~~~~F~~~Ve~~~~~glV~~W~~   82 (331)
T COG3380           3 SIAIVGAGIAGLAAAYALREAGREVTVFEKGRGVGGRLATRRLDGGRFDHGAQYFKPRDELFLRAVEALRDDGLVDVWTP   82 (331)
T ss_pred             cEEEEccchHHHHHHHHHHhcCcEEEEEEcCCCcccchheeccCCccccccceeecCCchHHHHHHHHHHhCCceeeccc
Confidence            68999999999999999999998887                                                      


Q ss_pred             --------------------------eeHHHHHHcCcEEEcCCeEEEEEeCCCCcEEEEEcCCC-CEEeCCEEEEccCCc
Q 012165          235 --------------------------RYEQLYQQNGVKFVKGASIKNLEAGSDGRVAAVKLEDG-STIDADTIVIGIGAK  287 (469)
Q Consensus       235 --------------------------~~~~~l~~~gV~~~~~~~v~~i~~~~~~~v~~v~~~~g-~~i~~D~vi~a~G~~  287 (469)
                                                .+.+.+ ....+++++++|+++...++  .-.+..++| ....+|.|++++..-
T Consensus        83 ~~~~~~~~~~~~~~d~~pyvg~pgmsalak~L-AtdL~V~~~~rVt~v~~~~~--~W~l~~~~g~~~~~~d~vvla~PAP  159 (331)
T COG3380          83 AVWTFTGDGSPPRGDEDPYVGEPGMSALAKFL-ATDLTVVLETRVTEVARTDN--DWTLHTDDGTRHTQFDDVVLAIPAP  159 (331)
T ss_pred             cccccccCCCCCCCCCCccccCcchHHHHHHH-hccchhhhhhhhhhheecCC--eeEEEecCCCcccccceEEEecCCC
Confidence                                      222322 34577788888888876522  335777666 567899999997754


Q ss_pred             cCCchh
Q 012165          288 PTVSPF  293 (469)
Q Consensus       288 p~~~~~  293 (469)
                      -...+|
T Consensus       160 Q~~~LL  165 (331)
T COG3380         160 QTATLL  165 (331)
T ss_pred             cchhhc
Confidence            333444

>PRK06452 sdhA succinate dehydrogenase flavoprotein subunit; Reviewed

Probab=95.39  E-value=0.082  Score=55.61  Aligned_cols=47  Identities=13%  Similarity=0.095  Sum_probs=36.2

Q ss_pred             HHHHcCcEEEcCCeEEEEEeCCCCcEEEEEcC---CC--CEEeCCEEEEccCC
Q 012165          239 LYQQNGVKFVKGASIKNLEAGSDGRVAAVKLE---DG--STIDADTIVIGIGA  286 (469)
Q Consensus       239 ~l~~~gV~~~~~~~v~~i~~~~~~~v~~v~~~---~g--~~i~~D~vi~a~G~  286 (469)
                      ..++.||+++.++.++++..+ +|++.++...   +|  ..+.++.||+|||-
T Consensus       145 ~~~~~gv~i~~~~~~~~Li~~-~g~v~Gv~~~~~~~g~~~~i~AkaVVLATGG  196 (566)
T PRK06452        145 RTSGLNVDFYNEWFSLDLVTD-NKKVVGIVAMQMKTLTPFFFKTKAVVLATGG  196 (566)
T ss_pred             HHHhCCCEEEeCcEEEEEEEE-CCEEEEEEEEECCCCeEEEEEeCeEEECCCc
Confidence            344578999999999998854 6888887654   33  25789999999994

>TIGR00551 nadB L-aspartate oxidase

Probab=95.35  E-value=0.076  Score=54.84  Aligned_cols=50  Identities=22%  Similarity=0.335  Sum_probs=36.8

Q ss_pred             HHHH-cCcEEEcCCeEEEEEeCCCCcEEEEEcCC-C--CEEeCCEEEEccCCccC
Q 012165          239 LYQQ-NGVKFVKGASIKNLEAGSDGRVAAVKLED-G--STIDADTIVIGIGAKPT  289 (469)
Q Consensus       239 ~l~~-~gV~~~~~~~v~~i~~~~~~~v~~v~~~~-g--~~i~~D~vi~a~G~~p~  289 (469)
                      .+++ .||+++.++.++++..+ ++.+.++...+ +  ..+.++.||+|+|-...
T Consensus       137 ~~~~~~gi~i~~~~~v~~l~~~-~g~v~Gv~~~~~~~~~~i~A~~VVlAtGG~~~  190 (488)
T TIGR00551       137 KALNHPNIRIIEGENALDLLIE-TGRVVGVWVWNRETVETCHADAVVLATGGAGK  190 (488)
T ss_pred             HHHhcCCcEEEECeEeeeeecc-CCEEEEEEEEECCcEEEEEcCEEEECCCcccC
Confidence            3444 68999999999998753 56666665543 3  36899999999997543

L-aspartate oxidase is the B protein, NadB, of the quinolinate synthetase complex. Quinolinate synthetase makes a precursor of the pyridine nucleotide portion of NAD. This model identifies proteins that cluster as L-aspartate oxidase (a flavoprotein difficult to separate from the set of closely related flavoprotein subunits of succinate dehydrogenase and fumarate reductase) by both UPGMA and neighbor-joining trees. The most distant protein accepted as an L-aspartate oxidase (NadB), that from Pyrococcus horikoshii, not only clusters with other NadB but is just one gene away from NadA.

>PRK12266 glpD glycerol-3-phosphate dehydrogenase; Reviewed

Probab=95.33  E-value=0.086  Score=54.71  Aligned_cols=48  Identities=23%  Similarity=0.338  Sum_probs=34.0

Q ss_pred             HHHcCcEEEcCCeEEEEEeCCCCcEEEEEcCC---CC--EEeCCEEEEccCCccC
Q 012165          240 YQQNGVKFVKGASIKNLEAGSDGRVAAVKLED---GS--TIDADTIVIGIGAKPT  289 (469)
Q Consensus       240 l~~~gV~~~~~~~v~~i~~~~~~~v~~v~~~~---g~--~i~~D~vi~a~G~~p~  289 (469)
                      .++.|++++.+++|+++..+ ++.+ .+.+.+   |+  ++.++.||.|+|.-.+
T Consensus       165 A~~~Ga~i~~~~~V~~i~~~-~~~~-~v~~~~~~~g~~~~i~a~~VVnAaG~wa~  217 (508)
T PRK12266        165 AAERGAEILTRTRVVSARRE-NGLW-HVTLEDTATGKRYTVRARALVNAAGPWVK  217 (508)
T ss_pred             HHHcCCEEEcCcEEEEEEEe-CCEE-EEEEEEcCCCCEEEEEcCEEEECCCccHH
Confidence            44568899999999998754 3332 455443   43  6899999999997543

>PLN02985 squalene monooxygenase

Probab=95.33  E-value=0.11  Score=53.87  Aligned_cols=28  Identities=29%  Similarity=0.268  Sum_probs=25.4

Q ss_pred             CCeEEEEcCChHHHHHHHHHHhCCCeEe
Q 012165          207 AKKVVVVGGGYIGMEVAAAAVGWKLDTT  234 (469)
Q Consensus       207 ~~~vvVvG~G~~g~e~A~~l~~~g~~v~  234 (469)
                      ..+|+|||+|..|+-+|..|++.|.+|.
T Consensus        43 ~~DViIVGAG~aGlalA~aLa~~G~~V~   70 (514)
T PLN02985         43 ATDVIIVGAGVGGSALAYALAKDGRRVH   70 (514)
T ss_pred             CceEEEECCCHHHHHHHHHHHHcCCeEE
Confidence            3579999999999999999999998886

>PLN02927 antheraxanthin epoxidase/zeaxanthin epoxidase

Probab=95.31  E-value=0.1  Score=55.33  Aligned_cols=30  Identities=37%  Similarity=0.464  Sum_probs=26.9

Q ss_pred             hcCCeEEEEcCChHHHHHHHHHHhCCCeEe
Q 012165          205 EKAKKVVVVGGGYIGMEVAAAAVGWKLDTT  234 (469)
Q Consensus       205 ~~~~~vvVvG~G~~g~e~A~~l~~~g~~v~  234 (469)
                      .+..+|+|||||..|+-+|..|++.|.+++
T Consensus        79 ~~~~~VlIVGgGIaGLalAlaL~r~Gi~V~  108 (668)
T PLN02927         79 KKKSRVLVAGGGIGGLVFALAAKKKGFDVL  108 (668)
T ss_pred             cCCCCEEEECCCHHHHHHHHHHHhcCCeEE
Confidence            456789999999999999999999988776

>PRK08294 phenol 2-monooxygenase; Provisional

Probab=95.28  E-value=0.11  Score=55.44  Aligned_cols=28  Identities=29%  Similarity=0.489  Sum_probs=25.0

Q ss_pred             CCeEEEEcCChHHHHHHHHHHhC-CCeEe
Q 012165          207 AKKVVVVGGGYIGMEVAAAAVGW-KLDTT  234 (469)
Q Consensus       207 ~~~vvVvG~G~~g~e~A~~l~~~-g~~v~  234 (469)
                      .-+|+|||+|+.|+-+|..|+++ |.++.
T Consensus        32 ~~dVlIVGAGPaGL~lA~~Lar~~Gi~v~   60 (634)
T PRK08294         32 EVDVLIVGCGPAGLTLAAQLSAFPDITTR   60 (634)
T ss_pred             CCCEEEECCCHHHHHHHHHHhcCCCCcEE
Confidence            45799999999999999999995 88776

>TIGR02485 CobZ_N-term precorrin 3B synthase CobZ

Probab=95.27  E-value=0.083  Score=53.66  Aligned_cols=60  Identities=13%  Similarity=0.185  Sum_probs=43.9

Q ss_pred             eHHHHHHcCcEEEcCCeEEEEEeCC-CCcEEEEEcCC-CCEEeCCEEEEccC-CccCCchhhh
Q 012165          236 YEQLYQQNGVKFVKGASIKNLEAGS-DGRVAAVKLED-GSTIDADTIVIGIG-AKPTVSPFER  295 (469)
Q Consensus       236 ~~~~l~~~gV~~~~~~~v~~i~~~~-~~~v~~v~~~~-g~~i~~D~vi~a~G-~~p~~~~~~~  295 (469)
                      +.+.+++.|+++++++.++++..++ ++.+.++...+ +..+.++.||+|+| +..|.+++++
T Consensus       129 L~~~a~~~Gv~i~~~~~v~~l~~~~~~g~v~gv~~~~~~~~i~ak~VIlAtGG~~~n~~~~~~  191 (432)
T TIGR02485       129 LYSSAERLGVEIRYGIAVDRIPPEAFDGAHDGPLTTVGTHRITTQALVLAAGGLGANRDWLRK  191 (432)
T ss_pred             HHHHHHHcCCEEEeCCEEEEEEecCCCCeEEEEEEcCCcEEEEcCEEEEcCCCcccCHHHHHh
Confidence            3455678899999999999998643 56676766543 35799999999998 4455555544

CobZ is essential for cobalamin biosynthesis (by knockout of the R. capsulatus gene ) and is complemented by the characterized precorrin 3B synthase CobG. The enzyme has been shown to contain flavin, heme and Fe-S cluster cofactors and is believed to require dioxygen as a substrate. This model identifies the N-terminal portion of the R. capsulatus gene which, in other species exists as a separate protein. The C-terminal portion is homologous to the 2-component signal transduction system protein CitB (TIGR02484).

>PRK09078 sdhA succinate dehydrogenase flavoprotein subunit; Reviewed

Probab=95.23  E-value=0.11  Score=54.92  Aligned_cols=48  Identities=19%  Similarity=0.266  Sum_probs=36.6

Q ss_pred             HHHcCcEEEcCCeEEEEEeCCCCcEEEEEc---CCCC--EEeCCEEEEccCCc
Q 012165          240 YQQNGVKFVKGASIKNLEAGSDGRVAAVKL---EDGS--TIDADTIVIGIGAK  287 (469)
Q Consensus       240 l~~~gV~~~~~~~v~~i~~~~~~~v~~v~~---~~g~--~i~~D~vi~a~G~~  287 (469)
                      +++.||+++.++.+.++..++++++.++..   .+|+  .+.++.||+|||--
T Consensus       159 ~~~~gi~i~~~~~v~~Li~~~~g~v~Gv~~~~~~~g~~~~i~AkaVVLATGG~  211 (598)
T PRK09078        159 SLKHNAEFFIEYFALDLIMDDGGVCRGVVAWNLDDGTLHRFRAHMVVLATGGY  211 (598)
T ss_pred             HhhcCCEEEEeEEEEEEEEcCCCEEEEEEEEECCCCcEEEEEcCEEEECCCCC
Confidence            445789999999999987554577878764   4564  68899999999854

>TIGR01810 betA choline dehydrogenase

Probab=95.23  E-value=0.016  Score=60.49  Aligned_cols=63  Identities=13%  Similarity=0.263  Sum_probs=46.1

Q ss_pred             eHHHHHHcCcEEEcCCeEEEEEeCCCCcEEEEEcCCC-C---EEeCCEEEEccCCccCCchhhhcCCc
Q 012165          236 YEQLYQQNGVKFVKGASIKNLEAGSDGRVAAVKLEDG-S---TIDADTIVIGIGAKPTVSPFERVGLN  299 (469)
Q Consensus       236 ~~~~l~~~gV~~~~~~~v~~i~~~~~~~v~~v~~~~g-~---~i~~D~vi~a~G~~p~~~~~~~~gl~  299 (469)
                      +....++.|++++.++.|.+|..+ ++++++|++.++ +   .+.++.||+|.|..-...+|..+|+.
T Consensus       200 l~~a~~r~nl~i~~~~~V~rI~~~-~~ra~GV~~~~~~~~~~~~~ak~VIlaAGai~SP~LLl~SGIG  266 (532)
T TIGR01810       200 LHPAMKRPNLEVQTRAFVTKINFE-GNRATGVEFKKGGRKEHTEANKEVILSAGAINSPQLLQLSGIG  266 (532)
T ss_pred             hhhhccCCCeEEEeCCEEEEEEec-CCeEEEEEEEeCCcEEEEEEeeeEEEccCCCCCHHHHHhcCCC
Confidence            334444678999999999999864 667778877543 2   35899999999976555666666664

This enzyme is a member of the GMC oxidoreductase family (pfam00732 and pfam05199), sharing a common evoluntionary origin and enzymatic reaction with alcohol dehydrogenase. Outgrouping from this model, Caulobacter crescentus shares sequence homology with choline dehydrogenase, yet other genes participating in this enzymatic reaction have not currently been identified.

>KOG2614 consensus Kynurenine 3-monooxygenase and related flavoprotein monooxygenases [Energy production and conversion; General function prediction only]

Probab=95.22  E-value=0.048  Score=53.21  Aligned_cols=27  Identities=41%  Similarity=0.615  Sum_probs=25.3

Q ss_pred             CeEEEEcCChHHHHHHHHHHhCCCeEe
Q 012165          208 KKVVVVGGGYIGMEVAAAAVGWKLDTT  234 (469)
Q Consensus       208 ~~vvVvG~G~~g~e~A~~l~~~g~~v~  234 (469)
                      .+|+|||||..|+-.|..|.+.|.++.
T Consensus         3 ~~VvIvGgGI~Gla~A~~l~r~G~~v~   29 (420)
T KOG2614|consen    3 PKVVIVGGGIVGLATALALHRKGIDVV   29 (420)
T ss_pred             CcEEEECCcHHHHHHHHHHHHcCCeEE
Confidence            579999999999999999999999886

>COG2303 BetA Choline dehydrogenase and related flavoproteins [Amino acid transport and metabolism]

Probab=95.20  E-value=0.02  Score=59.68  Aligned_cols=64  Identities=19%  Similarity=0.373  Sum_probs=46.9

Q ss_pred             eeHHHHHHcCcEEEcCCeEEEEEeCCCCcEEEEEcC--CC----CEEeCCEEEEccCCccCCchhhhcCCc
Q 012165          235 RYEQLYQQNGVKFVKGASIKNLEAGSDGRVAAVKLE--DG----STIDADTIVIGIGAKPTVSPFERVGLN  299 (469)
Q Consensus       235 ~~~~~l~~~gV~~~~~~~v~~i~~~~~~~v~~v~~~--~g----~~i~~D~vi~a~G~~p~~~~~~~~gl~  299 (469)
                      .+...++..++++++++.++++..+ .++.+.+++.  ++    .....+.||++.|...+..+|..+++.
T Consensus       208 ~l~~a~~~~nl~v~t~a~v~ri~~~-~~r~~gv~~~~~~~~~~~~~~a~~~viL~AGai~Sp~LL~~Sgig  277 (542)
T COG2303         208 YLKPALKRPNLTLLTGARVRRILLE-GDRAVGVEVEIGDGGTIETAVAAREVVLAAGAINSPKLLLLSGIG  277 (542)
T ss_pred             cchhHhcCCceEEecCCEEEEEEEE-CCeeEEEEEEeCCCCceEEEecCceEEEeccccCCHHHHHhcCCC
Confidence            5566678888999999999999864 4444455443  33    136789999999998877777766654

>KOG3851 consensus Sulfide:quinone oxidoreductase/flavo-binding protein [Energy production and conversion]

Probab=95.19  E-value=0.009  Score=55.89  Aligned_cols=85  Identities=25%  Similarity=0.350  Sum_probs=53.5

Q ss_pred             cCCeEEEEcCChHHHHHHHHHHhC-CCeEe----ee---------------HHHHHH----------cCcEEEcCCeEEE
Q 012165          206 KAKKVVVVGGGYIGMEVAAAAVGW-KLDTT----RY---------------EQLYQQ----------NGVKFVKGASIKN  255 (469)
Q Consensus       206 ~~~~vvVvG~G~~g~e~A~~l~~~-g~~v~----~~---------------~~~l~~----------~gV~~~~~~~v~~  255 (469)
                      .--+++|||||.-|+.+|..+.+. +..-.    -.               ...+.+          .|.+.+. ..|++
T Consensus        38 ~h~kvLVvGGGsgGi~~A~k~~rkl~~g~vgIvep~e~HyYQPgfTLvGgGl~~l~~srr~~a~liP~~a~wi~-ekv~~  116 (446)
T KOG3851|consen   38 KHFKVLVVGGGSGGIGMAAKFYRKLGSGSVGIVEPAEDHYYQPGFTLVGGGLKSLDSSRRKQASLIPKGATWIK-EKVKE  116 (446)
T ss_pred             cceEEEEEcCCcchhHHHHHHHhhcCCCceEEecchhhcccCcceEEeccchhhhhhccCcccccccCCcHHHH-HHHHh
Confidence            345799999999999999988654 22211    00               011111          1111111 24555


Q ss_pred             EEeCCCCcEEEEEcCCCCEEeCCEEEEccCCccCCchhhh
Q 012165          256 LEAGSDGRVAAVKLEDGSTIDADTIVIGIGAKPTVSPFER  295 (469)
Q Consensus       256 i~~~~~~~v~~v~~~~g~~i~~D~vi~a~G~~p~~~~~~~  295 (469)
                      ++++++    .|.+.+|++|.+|.+|+|.|..-+.+-+++
T Consensus       117 f~P~~N----~v~t~gg~eIsYdylviA~Giql~y~~IkG  152 (446)
T KOG3851|consen  117 FNPDKN----TVVTRGGEEISYDYLVIAMGIQLDYGKIKG  152 (446)
T ss_pred             cCCCcC----eEEccCCcEEeeeeEeeeeeceeccchhcC
Confidence            554322    578899999999999999999887665544

>PRK06175 L-aspartate oxidase; Provisional

Probab=95.07  E-value=0.12  Score=52.37  Aligned_cols=45  Identities=11%  Similarity=0.302  Sum_probs=34.1

Q ss_pred             HcCcEEEcCCeEEEEEeCCCCcEEEEE-cCCCC--EEeCCEEEEccCCc
Q 012165          242 QNGVKFVKGASIKNLEAGSDGRVAAVK-LEDGS--TIDADTIVIGIGAK  287 (469)
Q Consensus       242 ~~gV~~~~~~~v~~i~~~~~~~v~~v~-~~~g~--~i~~D~vi~a~G~~  287 (469)
                      +.||++++++.+.++..+ ++++.++. ..++.  .+.++.||+|+|--
T Consensus       141 ~~gV~i~~~t~v~~Li~~-~~~v~Gv~~~~~g~~~~i~Ak~VILAtGG~  188 (433)
T PRK06175        141 RKNITIIENCYLVDIIEN-DNTCIGAICLKDNKQINIYSKVTILATGGI  188 (433)
T ss_pred             cCCCEEEECcEeeeeEec-CCEEEEEEEEECCcEEEEEcCeEEEccCcc
Confidence            359999999999998753 56666654 33454  58999999999963

>PRK05945 sdhA succinate dehydrogenase flavoprotein subunit; Reviewed

Probab=95.02  E-value=0.14  Score=54.06  Aligned_cols=51  Identities=18%  Similarity=0.267  Sum_probs=37.9

Q ss_pred             HHHHHHcCcEEEcCCeEEEEEeCCCCcEEEEE---cCCCC--EEeCCEEEEccCCcc
Q 012165          237 EQLYQQNGVKFVKGASIKNLEAGSDGRVAAVK---LEDGS--TIDADTIVIGIGAKP  288 (469)
Q Consensus       237 ~~~l~~~gV~~~~~~~v~~i~~~~~~~v~~v~---~~~g~--~i~~D~vi~a~G~~p  288 (469)
                      .+.+++.||+++.++.+.++..+ ++++.++.   ..+|+  .+.++.||+|+|--.
T Consensus       142 ~~~~~~~gi~i~~~t~v~~L~~~-~g~v~Gv~~~~~~~g~~~~i~AkaVVlATGG~~  197 (575)
T PRK05945        142 VNNLRRYGVTIYDEWYVMRLILE-DNQAKGVVMYHIADGRLEVVRAKAVMFATGGYG  197 (575)
T ss_pred             HHHHhhCCCEEEeCcEEEEEEEE-CCEEEEEEEEEcCCCeEEEEECCEEEECCCCCc
Confidence            34456679999999999998743 66666664   34564  589999999999743

>KOG0029 consensus Amine oxidase [Secondary metabolites biosynthesis, transport and catabolism]

Probab=94.95  E-value=0.091  Score=53.97  Aligned_cols=43  Identities=23%  Similarity=0.495  Sum_probs=34.0

Q ss_pred             CcEEEcCCeEEEEEeCCCCcEEEEEcCCCCEEeCCEEEEccCCc
Q 012165          244 GVKFVKGASIKNLEAGSDGRVAAVKLEDGSTIDADTIVIGIGAK  287 (469)
Q Consensus       244 gV~~~~~~~v~~i~~~~~~~v~~v~~~~g~~i~~D~vi~a~G~~  287 (469)
                      |..++++..+.+|...+++. ..+++.++..+++|.||++...-
T Consensus       228 ~l~I~~~~~v~~i~~~~~~~-~~~~~~~~~~~~~d~vvvt~pl~  270 (501)
T KOG0029|consen  228 GLDIHLNKRVRKIKYGDDGA-VKVTVETGDGYEADAVVVTVPLG  270 (501)
T ss_pred             CcceeeceeeEEEEEecCCc-eEEEEECCCeeEeeEEEEEccHH
Confidence            88999999999998766665 24666666669999999987653

>PRK07057 sdhA succinate dehydrogenase flavoprotein subunit; Reviewed

Probab=94.95  E-value=0.17  Score=53.60  Aligned_cols=47  Identities=23%  Similarity=0.320  Sum_probs=34.2

Q ss_pred             HcCcEEEcCCeEEEEEeCCCCcEEEEEc---CCCC--EEeCCEEEEccCCcc
Q 012165          242 QNGVKFVKGASIKNLEAGSDGRVAAVKL---EDGS--TIDADTIVIGIGAKP  288 (469)
Q Consensus       242 ~~gV~~~~~~~v~~i~~~~~~~v~~v~~---~~g~--~i~~D~vi~a~G~~p  288 (469)
                      +.|++++.++.+.++..++++++.++..   .+|+  .+.++.||+|+|--.
T Consensus       160 ~~gi~i~~~~~~~~Li~~~~g~v~Gv~~~~~~~g~~~~i~AkaVILATGG~~  211 (591)
T PRK07057        160 AAKTQFFVEWMALDLIRDADGDVLGVTALEMETGDVYILEAKTTLFATGGAG  211 (591)
T ss_pred             hcCCEEEeCcEEEEEEEcCCCeEEEEEEEEcCCCeEEEEECCeEEECCCCcc
Confidence            4578888888888876544677777765   3453  578999999999643

>PTZ00139 Succinate dehydrogenase [ubiquinone] flavoprotein subunit; Provisional

Probab=94.95  E-value=0.15  Score=54.26  Aligned_cols=48  Identities=27%  Similarity=0.271  Sum_probs=35.7

Q ss_pred             HHHcCcEEEcCCeEEEEEeCCCCcEEEEEc---CCCC--EEeCCEEEEccCCc
Q 012165          240 YQQNGVKFVKGASIKNLEAGSDGRVAAVKL---EDGS--TIDADTIVIGIGAK  287 (469)
Q Consensus       240 l~~~gV~~~~~~~v~~i~~~~~~~v~~v~~---~~g~--~i~~D~vi~a~G~~  287 (469)
                      .++.||+++.++.+.++..++++++.++..   .+|+  .+.++.||+|||--
T Consensus       176 a~~~gv~i~~~~~~~~Li~~~~g~v~Gv~~~~~~~g~~~~i~AkaVVLATGG~  228 (617)
T PTZ00139        176 SLKYDCNFFIEYFALDLIMDEDGECRGVIAMSMEDGSIHRFRAHYTVIATGGY  228 (617)
T ss_pred             HHhCCCEEEeceEEEEEEECCCCEEEEEEEEECCCCeEEEEECCcEEEeCCCC
Confidence            345788999998899877545677877754   3563  57899999999743

>KOG2853 consensus Possible oxidoreductase [General function prediction only]

Probab=94.93  E-value=0.026  Score=53.39  Aligned_cols=52  Identities=19%  Similarity=0.269  Sum_probs=38.1

Q ss_pred             CCCcEEEEcCcHHHHHHHHHHHHcCCC-CCcEEEEcCCCCCCCCCCCCccccc
Q 012165           50 ENREFVIVGGGNAAGYAARTFVEHGMA-DGRLCIVSKEAYAPYERPALTKGYL  101 (469)
Q Consensus        50 ~~~~vvIIGgG~AGl~aA~~L~~~g~~-~~~V~vie~~~~~~~~~~~l~~~~~  101 (469)
                      .+.+|||||||-.|.+.|..|+++-.. +.+|.|+|++..+.-....+|-+.+
T Consensus        85 ~~~dVvIIGGG~~GsS~AfWLKer~rd~gl~VvVVErddtytqssT~lSvGGi  137 (509)
T KOG2853|consen   85 YHCDVVIIGGGGSGSSTAFWLKERARDEGLNVVVVERDDTYTQSSTMLSVGGI  137 (509)
T ss_pred             cccCEEEECCCccchhhHHHHHHHhhcCCceEEEEeccCcccccceeeeecce
Confidence            467999999999999999999876321 2489999998875444444554433

>PRK07121 hypothetical protein; Validated

Probab=94.88  E-value=0.19  Score=52.00  Aligned_cols=47  Identities=28%  Similarity=0.401  Sum_probs=34.3

Q ss_pred             HHcCcEEEcCCeEEEEEeCCCCcEEEEEcCC-CC--EEeC-CEEEEccCCc
Q 012165          241 QQNGVKFVKGASIKNLEAGSDGRVAAVKLED-GS--TIDA-DTIVIGIGAK  287 (469)
Q Consensus       241 ~~~gV~~~~~~~v~~i~~~~~~~v~~v~~~~-g~--~i~~-D~vi~a~G~~  287 (469)
                      ++.|+++++++.++++..++++++.+|...+ ++  .+.+ +.||+|+|--
T Consensus       188 ~~~gv~i~~~~~v~~l~~~~~g~v~Gv~~~~~~~~~~i~a~k~VVlAtGg~  238 (492)
T PRK07121        188 AALGVQIRYDTRATRLIVDDDGRVVGVEARRYGETVAIRARKGVVLAAGGF  238 (492)
T ss_pred             HhCCCEEEeCCEEEEEEECCCCCEEEEEEEeCCcEEEEEeCCEEEECCCCc
Confidence            3467888888888888765456777776643 32  5778 9999999854

>PRK06263 sdhA succinate dehydrogenase flavoprotein subunit; Reviewed

Probab=94.88  E-value=0.13  Score=53.79  Aligned_cols=49  Identities=14%  Similarity=0.261  Sum_probs=36.1

Q ss_pred             HHHHcCcEEEcCCeEEEEEeCCCCcEEEEEc---CCCC--EEeCCEEEEccCCc
Q 012165          239 LYQQNGVKFVKGASIKNLEAGSDGRVAAVKL---EDGS--TIDADTIVIGIGAK  287 (469)
Q Consensus       239 ~l~~~gV~~~~~~~v~~i~~~~~~~v~~v~~---~~g~--~i~~D~vi~a~G~~  287 (469)
                      .+++.||++++++.+.++..++++++.++..   .+|+  .+.++.||+|||--
T Consensus       143 ~~~~~gv~i~~~t~v~~Li~~~~~~v~Gv~~~~~~~g~~~~i~AkaVIlATGG~  196 (543)
T PRK06263        143 YLIKERIKILEEVMAIKLIVDENREVIGAIFLDLRNGEIFPIYAKATILATGGA  196 (543)
T ss_pred             HHhcCCCEEEeCeEeeeeEEeCCcEEEEEEEEECCCCcEEEEEcCcEEECCCCC
Confidence            3455789999999999987554444766653   4564  58899999999964

>KOG0405 consensus Pyridine nucleotide-disulphide oxidoreductase [Secondary metabolites biosynthesis, transport and catabolism]

Probab=94.75  E-value=0.03  Score=53.18  Aligned_cols=99  Identities=21%  Similarity=0.278  Sum_probs=64.8

Q ss_pred             CCCCcEEEEcCcHHHHHHHHHHHHcCCCCCcEEEEcCCCCCCCCCCCCcccccCCCCCCCCCCCCCccccCCCCCCCCHh
Q 012165           49 NENREFVIVGGGNAAGYAARTFVEHGMADGRLCIVSKEAYAPYERPALTKGYLFPLDKKPARLPGFHTCVGSGGERQTPE  128 (469)
Q Consensus        49 ~~~~~vvIIGgG~AGl~aA~~L~~~g~~~~~V~vie~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  128 (469)
                      ..+++++|||||.-++..|--++-.|-   ++.|+=+...           .+...+....              ....+
T Consensus       187 e~Pkr~vvvGaGYIavE~Agi~~gLgs---ethlfiR~~k-----------vLR~FD~~i~--------------~~v~~  238 (478)
T KOG0405|consen  187 EQPKRVVVVGAGYIAVEFAGIFAGLGS---ETHLFIRQEK-----------VLRGFDEMIS--------------DLVTE  238 (478)
T ss_pred             hcCceEEEEccceEEEEhhhHHhhcCC---eeEEEEecch-----------hhcchhHHHH--------------HHHHH
Confidence            456899999999998888888887774   4444322221           1211111111              12345


Q ss_pred             HHHHCCcEEEeCCcEEEEeCCC---cEEEeCCCeEEEeccEEeccCCCCC
Q 012165          129 WYKEKGIEMIYQDPVTSIDIEK---QTLITNSGKLLKYGSLIVATGCTAS  175 (469)
Q Consensus       129 ~~~~~~i~~~~~~~v~~id~~~---~~v~~~~g~~~~yd~lVlAtG~~~~  175 (469)
                      .+...|++++.++.++.+....   ..+.+..+.....|.|+.|+|-.|.
T Consensus       239 ~~~~~ginvh~~s~~~~v~K~~~g~~~~i~~~~~i~~vd~llwAiGR~Pn  288 (478)
T KOG0405|consen  239 HLEGRGINVHKNSSVTKVIKTDDGLELVITSHGTIEDVDTLLWAIGRKPN  288 (478)
T ss_pred             HhhhcceeecccccceeeeecCCCceEEEEeccccccccEEEEEecCCCC
Confidence            6788899999988887775433   3455556655569999999997765

>PRK08958 sdhA succinate dehydrogenase flavoprotein subunit; Reviewed

Probab=94.69  E-value=0.19  Score=53.04  Aligned_cols=47  Identities=21%  Similarity=0.267  Sum_probs=36.2

Q ss_pred             HHcCcEEEcCCeEEEEEeCCCCcEEEEEc---CCCC--EEeCCEEEEccCCc
Q 012165          241 QQNGVKFVKGASIKNLEAGSDGRVAAVKL---EDGS--TIDADTIVIGIGAK  287 (469)
Q Consensus       241 ~~~gV~~~~~~~v~~i~~~~~~~v~~v~~---~~g~--~i~~D~vi~a~G~~  287 (469)
                      ++.||+++.++.+.++..++++++.++..   .+|+  .+.++.||+|||--
T Consensus       154 ~~~gi~i~~~~~~~~Li~~~~g~v~Gv~~~~~~~g~~~~i~AkaVILATGG~  205 (588)
T PRK08958        154 LKNHTTIFSEWYALDLVKNQDGAVVGCTAICIETGEVVYFKARATVLATGGA  205 (588)
T ss_pred             hhcCCEEEeCcEEEEEEECCCCEEEEEEEEEcCCCcEEEEEcCeEEECCCCc
Confidence            45688999999999987655678888764   3554  57899999999854

>KOG2844 consensus Dimethylglycine dehydrogenase precursor [Amino acid transport and metabolism]

Probab=94.68  E-value=0.087  Score=54.33  Aligned_cols=52  Identities=15%  Similarity=0.297  Sum_probs=42.5

Q ss_pred             eeHHHHHHcCcEEEcCCeEEEEEeCCCCcEEEEEcCCCCEEeCCEEEEccCCcc
Q 012165          235 RYEQLYQQNGVKFVKGASIKNLEAGSDGRVAAVKLEDGSTIDADTIVIGIGAKP  288 (469)
Q Consensus       235 ~~~~~l~~~gV~~~~~~~v~~i~~~~~~~v~~v~~~~g~~i~~D~vi~a~G~~p  288 (469)
                      .+....++.|..++.+..|+++....++ ..+|++.-| .|++..+|.|+|+-.
T Consensus       192 ala~~A~~~GA~viE~cpV~~i~~~~~~-~~gVeT~~G-~iet~~~VNaaGvWA  243 (856)
T KOG2844|consen  192 ALARAASALGALVIENCPVTGLHVETDK-FGGVETPHG-SIETECVVNAAGVWA  243 (856)
T ss_pred             HHHHHHHhcCcEEEecCCcceEEeecCC-ccceeccCc-ceecceEEechhHHH
Confidence            5566778899999999999999864343 348888888 699999999999865

>PRK06854 adenylylsulfate reductase subunit alpha; Validated

Probab=94.65  E-value=0.22  Score=52.95  Aligned_cols=46  Identities=15%  Similarity=0.303  Sum_probs=33.6

Q ss_pred             HHHcC-cEEEcCCeEEEEEeCCCCcEEEEE---cCCCC--EEeCCEEEEccCC
Q 012165          240 YQQNG-VKFVKGASIKNLEAGSDGRVAAVK---LEDGS--TIDADTIVIGIGA  286 (469)
Q Consensus       240 l~~~g-V~~~~~~~v~~i~~~~~~~v~~v~---~~~g~--~i~~D~vi~a~G~  286 (469)
                      .++.+ |+++.++.+.++..+ ++++.++.   ..+++  .+.++.||+|+|-
T Consensus       142 a~~~ggV~i~~~~~v~~Li~~-~g~v~Gv~~~~~~~g~~~~i~AkaVILATGG  193 (608)
T PRK06854        142 AKKALGDNVLNRVFITDLLVD-DNRIAGAVGFSVRENKFYVFKAKAVIVATGG  193 (608)
T ss_pred             HHhcCCCEEEeCCEEEEEEEe-CCEEEEEEEEEccCCcEEEEECCEEEECCCc
Confidence            33444 999999999998643 56666663   34554  6899999999994

>KOG0399 consensus Glutamate synthase [Amino acid transport and metabolism]

Probab=94.51  E-value=0.049  Score=59.09  Aligned_cols=73  Identities=27%  Similarity=0.422  Sum_probs=55.6

Q ss_pred             cCCeEEEEcCChHHHHHHHHHHhCCCeEe---------------------------eeHHHHHHcCcEEEcCCeEEEEEe
Q 012165          206 KAKKVVVVGGGYIGMEVAAAAVGWKLDTT---------------------------RYEQLYQQNGVKFVKGASIKNLEA  258 (469)
Q Consensus       206 ~~~~vvVvG~G~~g~e~A~~l~~~g~~v~---------------------------~~~~~l~~~gV~~~~~~~v~~i~~  258 (469)
                      .+++|.|||+|+.|+..|..|.+.|+.|+                           +-.+++.+.||+|++|++|-+-  
T Consensus      1784 tg~~vaiigsgpaglaaadqlnk~gh~v~vyer~dr~ggll~ygipnmkldk~vv~rrv~ll~~egi~f~tn~eigk~-- 1861 (2142)
T KOG0399|consen 1784 TGKRVAIIGSGPAGLAAADQLNKAGHTVTVYERSDRVGGLLMYGIPNMKLDKFVVQRRVDLLEQEGIRFVTNTEIGKH-- 1861 (2142)
T ss_pred             cCcEEEEEccCchhhhHHHHHhhcCcEEEEEEecCCcCceeeecCCccchhHHHHHHHHHHHHhhCceEEeecccccc--
Confidence            47899999999999999999999999987                           2346788899999988654221  


Q ss_pred             CCCCcEEEEEcCCCCEEeCCEEEEccCCccC
Q 012165          259 GSDGRVAAVKLEDGSTIDADTIVIGIGAKPT  289 (469)
Q Consensus       259 ~~~~~v~~v~~~~g~~i~~D~vi~a~G~~p~  289 (469)
                              +. -|+-.-+-|.||+|+|..-.
T Consensus      1862 --------vs-~d~l~~~~daiv~a~gst~p 1883 (2142)
T KOG0399|consen 1862 --------VS-LDELKKENDAIVLATGSTTP 1883 (2142)
T ss_pred             --------cc-HHHHhhccCeEEEEeCCCCC
Confidence                    11 23334567899999997643

>PLN00128 Succinate dehydrogenase [ubiquinone] flavoprotein subunit

Probab=94.44  E-value=0.19  Score=53.56  Aligned_cols=47  Identities=23%  Similarity=0.341  Sum_probs=35.3

Q ss_pred             HHcCcEEEcCCeEEEEEeCCCCcEEEEEc---CCCC--EEeCCEEEEccCCc
Q 012165          241 QQNGVKFVKGASIKNLEAGSDGRVAAVKL---EDGS--TIDADTIVIGIGAK  287 (469)
Q Consensus       241 ~~~gV~~~~~~~v~~i~~~~~~~v~~v~~---~~g~--~i~~D~vi~a~G~~  287 (469)
                      .+.||+++.++.+.++..++++++.++..   .+|+  .+.++.||+|||--
T Consensus       198 ~~~gv~i~~~~~~~~Li~~~~g~v~Gv~~~~~~~g~~~~i~AkaVILATGG~  249 (635)
T PLN00128        198 MKHNTQFFVEYFALDLIMDSDGACQGVIALNMEDGTLHRFRAHSTILATGGY  249 (635)
T ss_pred             HhCCCEEEEeeEEEEEEEcCCCEEEEEEEEEcCCCeEEEEEcCeEEECCCCC
Confidence            35688999898888876544677777765   3553  67899999999854

>PRK07803 sdhA succinate dehydrogenase flavoprotein subunit; Reviewed

Probab=94.41  E-value=0.24  Score=52.81  Aligned_cols=41  Identities=27%  Similarity=0.444  Sum_probs=31.7

Q ss_pred             cEEEcCCeEEEEEeCCCCcEEEEEc---CCCC--EEeCCEEEEccCC
Q 012165          245 VKFVKGASIKNLEAGSDGRVAAVKL---EDGS--TIDADTIVIGIGA  286 (469)
Q Consensus       245 V~~~~~~~v~~i~~~~~~~v~~v~~---~~g~--~i~~D~vi~a~G~  286 (469)
                      |+++.++.+.++..+ ++++.++..   .+|+  .+.++.||+|+|-
T Consensus       166 v~i~~~~~v~~L~~~-~g~v~Gv~~~~~~~g~~~~i~Ak~VVlATGG  211 (626)
T PRK07803        166 IKVFAECTITELLKD-GGRIAGAFGYWRESGRFVLFEAPAVVLATGG  211 (626)
T ss_pred             eEEEeCCEEEEEEEE-CCEEEEEEEEECCCCeEEEEEcCeEEECCCc
Confidence            999999999998753 566666543   3554  5899999999995

>PRK13800 putative oxidoreductase/HEAT repeat-containing protein; Provisional

Probab=94.40  E-value=0.06  Score=59.86  Aligned_cols=26  Identities=42%  Similarity=0.796  Sum_probs=23.9

Q ss_pred             CCCEEeCCCCCCCCCceEEecccccc
Q 012165          302 VGGIQVDGQFRTRMPGIFAIGDVAAF  327 (469)
Q Consensus       302 ~g~i~Vd~~~~t~~~~Vfa~GD~a~~  327 (469)
                      .|||.||.+++|++|++||+|||+..
T Consensus       361 ~GGi~vd~~~~T~v~GLfAaGE~a~~  386 (897)
T PRK13800        361 ASGVWVDEHARTTVPGLYAAGDLACV  386 (897)
T ss_pred             cceEEecCCCcccCCCeEechhccCc
Confidence            47999999999999999999999864

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

ID	Length	Definition	E-value
Query	469
3fg2_P	404	Crystal Structure Of Ferredoxin Reductase For The C		9e-30
3lxd_A	415	Crystal Structure Of Ferredoxin Reductase Arr From		2e-29
3lb8_A	436	Crystal Structure Of The Covalent Putidaredoxin Red		3e-28
1q1r_A	431	Crystal Structure Of Putidaredoxin Reductase From P		3e-28
3ef6_A	410	Crystal Structure Of Toluene 2,3-Dioxygenase Reduct		3e-20
1d7y_A	408	Crystal Structure Of Nadh-Dependent Ferredoxin Redu		2e-18
2gr3_A	408	Crystal Structure Of Ferredoxin Reductase, Bpha4 (O		2e-18
3gd4_A	511	Crystal Structure Of The Reduced, Nad-Bound Form Of		3e-14
4fdc_B	514	Crystal Structure Of The E493v Mutant Of Human Apop		4e-14
3gd3_A	535	Crystal Structure Of A Naturally Folded Murine Apop		4e-14
1gv4_A	528	Murine Apoptosis-Inducing Factor (Aif) Length = 528		4e-14
1m6i_A	493	Crystal Structure Of Apoptosis Inducing Factor (Aif		1e-13
3iwa_A	472	Crystal Structure Of A Fad-Dependent Pyridine Nucle		2e-12
1xhc_A	367	Nadh Oxidase /nitrite Reductase From Pyrococcus Fur		7e-11
3cgc_A	480	Pyridine Nucleotide Complexes With Bacillus Anthrac		7e-10
3cgb_A	480	Pyridine Nucleotide Complexes With Bacillus Anthrac		1e-08
2eq7_A	455	Crystal Structure Of Lipoamide Dehydrogenase From T		3e-08
1ebd_A	455	Dihydrolipoamide Dehydrogenase Complexed With The B		3e-07
2cdu_A	452	The Crystal Structure Of Water-Forming Nad(P)h Oxid		4e-07
4gcm_A	312	Crystal Structure Of A Thioredoxine Reductase (Trxb		8e-07
1nda_A	491	The Structure Of Trypanosoma Cruzi Trypanothione Re		1e-06
1gxf_A	492	Crystal Structure Of Trypanosoma Cruzi Trypanothion		1e-06
1bzl_A	486	Crystal Structure Of Trypanosoma Cruzi Trypanothion		2e-06
1aog_A	485	Trypanosoma Cruzi Trypanothione Reductase (Oxidized		2e-06
2wba_A	492	Properties Of Trypanothione Reductase From T. Bruce		2e-06
2woi_A	495	Trypanothione Reductase From Trypanosoma Brucei Len		2e-06
3ntd_A	565	Structure Of The Shewanella Loihica Pv-4 Nadh-Depen		2e-06
3klj_A	385	Crystal Structure Of Nadh:rubredoxin Oxidoreductase		2e-06
1nhs_A	447	An L40c Mutation Converts The Cysteine-Sulfenic Aci		6e-06
1nhr_A	447	An L40c Mutation Converts The Cysteine-Sulfenic Aci		6e-06
1joa_A	447	Nadh Peroxidase With Cysteine-Sulfenic Acid Length		6e-06
1nhq_A	447	Crystallographic Analyses Of Nadh Peroxidase Cys42a		6e-06
1nhp_A	447	Crystallographic Analyses Of Nadh Peroxidase Cys42a		7e-06
3nta_A	574	Structure Of The Shewanella Loihica Pv-4 Nadh-Depen		1e-05
3nt6_A	574	Structure Of The Shewanella Loihica Pv-4 Nadh-Depen		1e-05
1zy8_A	474	The Crystal Structure Of Dihydrolipoamide Dehydroge		1e-05
1zmc_A	474	Crystal Structure Of Human Dihydrolipoamide Dehydro		1e-05
3rnm_A	495	The Crystal Structure Of The Subunit Binding Of Hum		1e-05
1f8w_A	447	Crystal Structure Of Nadh Peroxidase Mutant: R303m		4e-05
3ab1_A	360	Crystal Structure Of Ferredoxin Nadp+ Oxidoreductas		7e-05
2bc1_A	490	Structural Analysis Of Streptococcus Pyogenes Nadh		8e-05
2bc0_A	490	Structural Analysis Of Streptococcus Pyogenes Nadh		8e-05
4dna_A	463	Crystal Structure Of Putative Glutathione Reductase		1e-04
3icr_A	588	Crystal Structure Of Oxidized Bacillus Anthracis Co		1e-04
1dxl_A	470	Dihydrolipoamide Dehydrogenase Of Glycine Decarboxy		3e-04
2hqm_A	479	Crystal Structure Of Glutathione Reductase Glr1 Fro		4e-04
3urh_A	491	Crystal Structure Of A Dihydrolipoamide Dehydrogena		7e-04

>pdb|3FG2|P Chain P, Crystal Structure Of Ferredoxin Reductase For The Cyp199a2 System From Rhodopseudomonas Palustris Length = 404

Iteration: 1
 Score =  128 bits (321), Expect = 9e-30,   Method: Compositional matrix adjust.
 Identities = 99/343 (28%), Positives = 158/343 (46%), Gaps = 46/343 (13%)
Query: 53  EFVIVGGGNAAGYAARTFVEHGMADGRLCIVSKEAYAPYERPALTKGYLFPLDKKPARLP 112
           + V++ G   AG+     +      GR+ +++ E + PY+RP L+K YL           
Sbjct: 2   DTVLIAGAGHAGFQVAVSLRQAKYPGRIALINDEKHLPYQRPPLSKAYL----------- 50
Query: 113 GFHTCVGSGGERQT----PE-WYKEKGIEMIYQDPVTSIDIEKQTLITNSGKLLKYGSLI 167
                  SGG+  +    PE +++++ IE+I  D + SID E + L+  SG  ++YG L+
Sbjct: 51  ------KSGGDPNSLMFRPEKFFQDQAIELI-SDRMVSIDREGRKLLLASGTAIEYGHLV 103
Query: 168 VATGCTASRFPEKIGGYLPGVHYIRDVADADALISSLEKAKKXXXXXXXYIGMEVAAA-- 225
           +ATG   +R  +     LP V Y+R + +++ L   +   K        +IG+E AA   
Sbjct: 104 LATGAR-NRMLDVPNASLPDVLYLRTLDESEVLRQRMPDKKHVVVIGAGFIGLEFAATAR 162
Query: 226 AVGWKLD-----------------TTRYEQLYQQNGVKFVKGASIKNLEAGSDGRVAAVK 268
           A G ++D                 ++ +   +   G++   G     + A  D RV  V 
Sbjct: 163 AKGLEVDVVELAPRVMARVVTPEISSYFHDRHSGAGIRMHYGVRATEIAAEGD-RVTGVV 221
Query: 269 LEDGSTIDADTIVIGIGAKPTVSPFERVGLNSSVGGIQVDGQFRTRMPGIFAIGDVAAFP 328
           L DG+T+  D +V+G+G  P V          +  GI VD Q  T  P I AIGD A F 
Sbjct: 222 LSDGNTLPCDLVVVGVGVIPNVE-IAAAAGLPTAAGIIVDQQLLTSDPHISAIGDCALFE 280
Query: 329 LKMYDRTARVEHVDHARQSAQHCIKALLSAQTHTYDYLPYFYS 371
              +  T RVE V +A   A+ C+ A L+     YD  P+F+S
Sbjct: 281 SVRFGETMRVESVQNATDQAR-CVAARLTGDAKPYDGYPWFWS 322

>pdb|3LXD|A Chain A, Crystal Structure Of Ferredoxin Reductase Arr From Novosphingobium Aromaticivorans Length = 415

Iteration: 1
 Score =  126 bits (317), Expect = 2e-29,   Method: Compositional matrix adjust.
 Identities = 113/388 (29%), Positives = 174/388 (44%), Gaps = 47/388 (12%)
Query: 45  SSFANENREFVIVGGGNAAGYAARTFVEHGMADGRLCIVSKEAYAPYERPALTKGYLFPL 104
           S    E  + VIVG G+    AA    ++G  +GR+ ++ +E   PYERP L+K YL   
Sbjct: 3   SEVQAERADVVIVGAGHGGAQAAIALRQNGF-EGRVLVIGREPEIPYERPPLSKEYL--- 58
Query: 105 DKKPARLPGFH-TCVGSGGERQTPEWYKEKGIEMIYQDPVTSIDIEKQTLITNSGKLLKY 163
               AR   F   C+      +  +++++K +EM     V S+D    T+    G  ++Y
Sbjct: 59  ----AREKTFERICI------RPAQFWEDKAVEMKLGAEVVSLDPAAHTVKLGDGSAIEY 108
Query: 164 GSLIVATGCTASRFPEKIGGYLPGVHYIRDVADADALISSLEK-AKKXXXXXXXYIGMEV 222
           G LI ATG    R    +G  L GVH +R   DAD L++ L+  AK        YIG+E 
Sbjct: 109 GKLIWATGGDPRRL-SCVGADLAGVHAVRTKEDADRLMAELDAGAKNAVVIGGGYIGLEA 167
Query: 223 AAAAVGWKLDTTRYEQL-------------------YQQNGVKFVKGASIKNLEAGSDGR 263
           AA    + ++ T  E L                   ++ +GV    GA++  +E G   +
Sbjct: 168 AAVLTKFGVNVTLLEALPRVLARVAGEALSEFYQAEHRAHGVDLRTGAAMDCIE-GDGTK 226
Query: 264 VAAVKLEDGSTIDADTIVIGIGAKPTVSPFERVGLNSSVGGIQVDGQFRTRMPGIFAIGD 323
           V  V+++DGS I AD +++GIG  P V      G +    G+ VD   RT +  ++AIGD
Sbjct: 227 VTGVRMQDGSVIPADIVIVGIGIVPCVGALISAGASGG-NGVDVDEFCRTSLTDVYAIGD 285
Query: 324 VAAFPLKMYD-RTARVEHVDHARQSAQHCIKALLSAQTHTYDYLPYFYSRVFEYEGSPRK 382
            AA      D    R+E V +A   A    K +  A    Y   P+F+S  ++ +     
Sbjct: 286 CAAHANDFADGAVIRLESVQNANDMATAAAKDICGAPV-PYKATPWFWSNQYDLK----- 339
Query: 383 VWWQFFGDNVGETIEIGNFDPKIATFWI 410
              Q  G + G    +   DP   +F +
Sbjct: 340 --LQTVGLSTGHDNAVLRGDPATRSFSV 365

>pdb|3LB8|A Chain A, Crystal Structure Of The Covalent Putidaredoxin Reductase- Putidaredoxin Complex Length = 436

Iteration: 1
 Score =  122 bits (307), Expect = 3e-28,   Method: Compositional matrix adjust.
 Identities = 99/349 (28%), Positives = 154/349 (44%), Gaps = 37/349 (10%)
Query: 49  NENREFVIVGGGNAAGYAARTFVEHGMADGRLCIVSKEAYAPYERPALTKGYLFPLDKKP 108
           N N   VIVG G A    A      G  +G + +V      P+  P L+K YL       
Sbjct: 1   NANDNVVIVGTGLAGVEVAFGLRASGW-EGNIRLVGDATVIPHHLPPLSKAYL----AGK 55
Query: 109 ARLPGFHTCVGSGGERQTPEWYKEKGIEMIYQDPVTSIDIEKQTLITNSGKLLKYGSLIV 168
           A     +         +TP+ Y  + I+++    VT+I+ ++Q +I + G+ L Y  L++
Sbjct: 56  ATAESLYL--------RTPDAYAAQNIQLLGGTQVTAINRDRQQVILSDGRALDYDRLVL 107
Query: 169 ATGCTASRFPEKIG--GYLPGVHYIRDVADADALISSLEKAKKXXXXXXXYIGMEVAAAA 226
           ATG      P   G  G      Y+R + DA+ +   L    +       YIG+EVAA A
Sbjct: 108 ATGGRPRPLPVASGAVGKANNFRYLRTLEDAECIRRQLIADNRLVVIGGGYIGLEVAATA 167
Query: 227 VGWKLDTTR-------------------YEQLYQQNGVKFVKGASIKNLEAGSDG-RVAA 266
           +   +  T                    YE L+++ GV    G  +   E  +D  +V A
Sbjct: 168 IKANMHVTLLDTAARVLERVTAPPVSAFYEHLHREAGVDIRTGTQVCGFEMSTDQQKVTA 227
Query: 267 VKLEDGSTIDADTIVIGIGAKPTVSPFERVGLNSSVGGIQVDGQFRTRMPGIFAIGDVAA 326
           V  EDG+ + AD ++ GIG  P        GL     GI ++   +T  P I A+GD A 
Sbjct: 228 VLCEDGTRLPADLVIAGIGLIPNCELASAAGLQVD-NGIVINEHMQTSDPLIMAVGDCAR 286
Query: 327 FPLKMYDRTARVEHVDHARQSAQHCIKALLSAQTHTYDYLPYFYSRVFE 375
           F  ++YDR  R+E V +A + A+  I A+L  +    +  P+F+S  +E
Sbjct: 287 FHSQLYDRWVRIESVPNALEQARK-IAAILCGKVPRDEAAPWFWSDQYE 334

>pdb|1Q1R|A Chain A, Crystal Structure Of Putidaredoxin Reductase From Pseudomonas Putida Length = 431

Iteration: 1
 Score =  122 bits (307), Expect = 3e-28,   Method: Compositional matrix adjust.
 Identities = 99/349 (28%), Positives = 154/349 (44%), Gaps = 37/349 (10%)
Query: 49  NENREFVIVGGGNAAGYAARTFVEHGMADGRLCIVSKEAYAPYERPALTKGYLFPLDKKP 108
           N N   VIVG G A    A      G  +G + +V      P+  P L+K YL       
Sbjct: 2   NANDNVVIVGTGLAGVEVAFGLRASGW-EGNIRLVGDATVIPHHLPPLSKAYL----AGK 56
Query: 109 ARLPGFHTCVGSGGERQTPEWYKEKGIEMIYQDPVTSIDIEKQTLITNSGKLLKYGSLIV 168
           A     +         +TP+ Y  + I+++    VT+I+ ++Q +I + G+ L Y  L++
Sbjct: 57  ATAESLYL--------RTPDAYAAQNIQLLGGTQVTAINRDRQQVILSDGRALDYDRLVL 108
Query: 169 ATGCTASRFPEKIG--GYLPGVHYIRDVADADALISSLEKAKKXXXXXXXYIGMEVAAAA 226
           ATG      P   G  G      Y+R + DA+ +   L    +       YIG+EVAA A
Sbjct: 109 ATGGRPRPLPVASGAVGKANNFRYLRTLEDAECIRRQLIADNRLVVIGGGYIGLEVAATA 168
Query: 227 VGWKLDTTR-------------------YEQLYQQNGVKFVKGASIKNLEAGSDG-RVAA 266
           +   +  T                    YE L+++ GV    G  +   E  +D  +V A
Sbjct: 169 IKANMHVTLLDTAARVLERVTAPPVSAFYEHLHREAGVDIRTGTQVCGFEMSTDQQKVTA 228
Query: 267 VKLEDGSTIDADTIVIGIGAKPTVSPFERVGLNSSVGGIQVDGQFRTRMPGIFAIGDVAA 326
           V  EDG+ + AD ++ GIG  P        GL     GI ++   +T  P I A+GD A 
Sbjct: 229 VLCEDGTRLPADLVIAGIGLIPNCELASAAGLQVD-NGIVINEHMQTSDPLIMAVGDCAR 287
Query: 327 FPLKMYDRTARVEHVDHARQSAQHCIKALLSAQTHTYDYLPYFYSRVFE 375
           F  ++YDR  R+E V +A + A+  I A+L  +    +  P+F+S  +E
Sbjct: 288 FHSQLYDRWVRIESVPNALEQARK-IAAILCGKVPRDEAAPWFWSDQYE 335

>pdb|3EF6|A Chain A, Crystal Structure Of Toluene 2,3-Dioxygenase Reductase Length = 410

Iteration: 1
 Score = 96.3 bits (238), Expect = 3e-20,   Method: Compositional matrix adjust.
 Identities = 83/298 (27%), Positives = 128/298 (42%), Gaps = 37/298 (12%)
Query: 56  IVGGGNAAGYAARTFVEHGMADGRLCIVSKEAYAPYERPALTKGYLFPLDKKPARLPGFH 115
           I+G G      A+     G  +GR+ ++  E + PY+RP+L+K  L    ++P  L    
Sbjct: 7   IIGNGVGGFTTAQALRAEGF-EGRISLIGDEPHLPYDRPSLSKAVLDGSLERPPIL---- 61
Query: 116 TCVGSGGERQTPEWYKEKGIEMIYQDPVTSIDIEKQTLITNSGKLLKYGSLIVATGCTAS 175
                       +WY E  I+M+    VT++D++ +T+  + G  L   ++++ATG  A 
Sbjct: 62  ---------AEADWYGEARIDMLTGPEVTALDVQTRTISLDDGTTLSADAIVIATGSRA- 111
Query: 176 RFPEKIGGYLPGVHYIRDVADADALISSLEKAKKXXXXXXXYIGMEVAAAAVGWKLDTTR 235
           R     G  LPGV  +R   D   L  S   A +        IG EVA  A    L  T 
Sbjct: 112 RTMALPGSQLPGVVTLRTYGDVQVLRDSWTSATRLLIVGGGLIGCEVATTARKLGLSVTI 171
Query: 236 YEQ-------------------LYQQNGVKFVKGASIKNLEAGSDGRVAAVKLEDGSTID 276
            E                    L  + GV+   G  +       +G++  V   DG +  
Sbjct: 172 LEAGDELLVRVLGRRIGAWLRGLLTELGVQVELGTGVVGFSG--EGQLEQVMASDGRSFV 229
Query: 277 ADTIVIGIGAKPTVSPFERVGLNSSVGGIQVDGQFRTRMPGIFAIGDVAAFPLKMYDR 334
           AD+ +I +GA+P      + GL    G I VD    T   G+FA+GDVA++PL+   R
Sbjct: 230 ADSALICVGAEPADQLARQAGLACDRGVI-VDHCGATLAKGVFAVGDVASWPLRAGGR 286

>pdb|1D7Y|A Chain A, Crystal Structure Of Nadh-Dependent Ferredoxin Reductase, Bpha4 Length = 408

Iteration: 1
 Score = 90.9 bits (224), Expect = 2e-18,   Method: Compositional matrix adjust.
 Identities = 87/325 (26%), Positives = 137/325 (42%), Gaps = 34/325 (10%)
Query: 63  AGYAARTFV---EHGMADGRLCIVSKEAYAPYERPALTKGYLFPLDKKPARLPGFHTCVG 119
           AG A+ +FV         G + +V  EA  PY+RP L+K ++   D +  RL     C  
Sbjct: 15  AGLASVSFVAELRQAGYQGLITVVGDEAERPYDRPPLSKDFMAHGDAEKIRL----DC-- 68
Query: 120 SGGERQTPEWYKEKGIEMIYQDPVTSIDIEKQTLITNSGKLLKYGSLIVATGCTASRFPE 179
               ++ PE      +E +      S D +  T+  + G+ L YG+L++ATG      P 
Sbjct: 69  ----KRAPE------VEWLLGVTAQSFDPQAHTVALSDGRTLPYGTLVLATGAAPRALPT 118
Query: 180 KIGGYLPGVHYIRDVADADALISSLEKAKKXXXXXXXYIGMEVAAAA----VGWKLDTTR 235
             G  +P VH +R + DA  + + L    +        IG+E+AA A    V   L  T+
Sbjct: 119 LQGATMP-VHTLRTLEDARRIQAGLRPQSRLLIVGGGVIGLELAATARTAGVHVSLVETQ 177
Query: 236 YEQLYQQNGVKFVKGASIKNLEAGSDGRV---------AAVKLEDGSTIDADTIVIGIGA 286
              + +          +  +   G D R            V L+DG+ I AD +V+GIG 
Sbjct: 178 PRLMSRAAPATLADFVARYHAAQGVDLRFERSVTGSVDGVVLLDDGTRIAADMVVVGIGV 237
Query: 287 KPTVSPFERVGLNSSVGGIQVDGQFRTRMPGIFAIGDVAAFPLKMYDRTARVEHVDHARQ 346
               +     GL     GI VD   RT  P ++A+GDV      +  R  R+E   +A+ 
Sbjct: 238 LANDALARAAGLACD-DGIFVDAYGRTTCPDVYALGDVTRQRNPLSGRFERIETWSNAQN 296
Query: 347 SAQHCIKALLSAQTHTYDYLPYFYS 371
                 + L+      Y  LP+++S
Sbjct: 297 QGIAVARHLVDPTAPGYAELPWYWS 321

>pdb|2GR3|A Chain A, Crystal Structure Of Ferredoxin Reductase, Bpha4 (Oxidized Form) Length = 408

Iteration: 1
 Score = 90.5 bits (223), Expect = 2e-18,   Method: Compositional matrix adjust.
 Identities = 87/325 (26%), Positives = 137/325 (42%), Gaps = 34/325 (10%)
Query: 63  AGYAARTFV---EHGMADGRLCIVSKEAYAPYERPALTKGYLFPLDKKPARLPGFHTCVG 119
           AG A+ +FV         G + +V  EA  PY+RP L+K ++   D +  RL     C  
Sbjct: 15  AGLASVSFVAELRQAGYQGLITVVGDEAERPYDRPPLSKDFMAHGDAEKIRL----DC-- 68
Query: 120 SGGERQTPEWYKEKGIEMIYQDPVTSIDIEKQTLITNSGKLLKYGSLIVATGCTASRFPE 179
               ++ PE      +E +      S D +  T+  + G+ L YG+L++ATG      P 
Sbjct: 69  ----KRAPE------VEWLLGVTAQSFDPQAHTVALSDGRTLPYGTLVLATGAAPRALPT 118
Query: 180 KIGGYLPGVHYIRDVADADALISSLEKAKKXXXXXXXYIGMEVAAAA----VGWKLDTTR 235
             G  +P VH +R + DA  + + L    +        IG+E+AA A    V   L  T+
Sbjct: 119 LQGATMP-VHTLRTLEDARRIQAGLRPQSRLLIVGGGVIGLELAATARTAGVHVSLVETQ 177
Query: 236 YEQLYQQNGVKFVKGASIKNLEAGSDGRV---------AAVKLEDGSTIDADTIVIGIGA 286
              + +          +  +   G D R            V L+DG+ I AD +V+GIG 
Sbjct: 178 PRLMSRAAPATLADFVARYHAAQGVDLRFERSVTGSVDGVVLLDDGTRIAADMVVVGIGV 237
Query: 287 KPTVSPFERVGLNSSVGGIQVDGQFRTRMPGIFAIGDVAAFPLKMYDRTARVEHVDHARQ 346
               +     GL     GI VD   RT  P ++A+GDV      +  R  R+E   +A+ 
Sbjct: 238 LANDALARAAGLACD-DGIFVDAYGRTTCPDVYALGDVTRQRNPLSGRFERIETWSNAQN 296
Query: 347 SAQHCIKALLSAQTHTYDYLPYFYS 371
                 + L+      Y  LP+++S
Sbjct: 297 QGIAVARHLVDPTAPGYAELPWYFS 321

>pdb|3GD4|A Chain A, Crystal Structure Of The Reduced, Nad-Bound Form Of Murine Apoptosis Inducing Factor Length = 511

Iteration: 1
 Score = 76.6 bits (187), Expect = 3e-14,   Method: Compositional matrix adjust.
 Identities = 89/358 (24%), Positives = 147/358 (41%), Gaps = 67/358 (18%)
Query: 79  RLCIVSKEAYAPYERPALTKGYLFPLDKKPARLPGFHTCVGSGGER----QTPEWY---- 130
           R+ IVS++   PY RP L+K   F  D    +   F     +G ER    Q P +Y    
Sbjct: 56  RVLIVSEDPELPYMRPPLSKELWFSDDPNVTKTLQFRQW--NGKERSIYFQPPSFYVSAQ 113
Query: 131 -----KEKGIEMIYQDPVTSIDIEKQTLITNSGKLLKYGSLIVATGCTASRFP--EKIGG 183
                +  G+ ++    V  +D+    +  N G  + +   ++ATG T       ++ G 
Sbjct: 114 DLPNIENGGVAVLTGKKVVHLDVRGNMVKLNDGSQITFEKCLIATGGTPRSLSAIDRAGA 173
Query: 184 YLPG-VHYIRDVADADALISSLEKAKKXXXXXXXYIGMEVAAAAVGWKLDTTRYE--QLY 240
            +       R + D  AL     + K        ++G E+ A A+G K   +  E  QL+
Sbjct: 174 EVKSRTTLFRKIGDFRALEKISREVKSITVIGGGFLGSEL-ACALGRKSQASGIEVIQLF 232
Query: 241 ----------------------QQNGVKFVKGASIKNLEAGSDGRVAAVKLEDGSTIDAD 278
                                 ++ GVK +  A ++++  G  G    +KL+DG  ++ D
Sbjct: 233 PEKGNMGKILPQYLSNWTMEKVKREGVKVMPNAIVQSV--GVSGGRLLIKLKDGRKVETD 290
Query: 279 TIVIGIGAKPTVSPFERVGL--NSSVGGIQVDGQFRTRMPGIFAIGDVAAF-PLKMYDRT 335
            IV  +G +P V   +  GL  +S  GG +V+ + + R   I+  GD A F  +K+  R 
Sbjct: 291 HIVTAVGLEPNVELAKTGGLEIDSDFGGFRVNAELQARS-NIWVAGDAACFYDIKLGRR- 348
Query: 336 ARVEHVDHARQSAQHCIKALLSAQTHTYDYLPYFYSRVFEYEGSPRKVWWQFFGDNVG 393
            RVEH DHA       +   L+ +  T    PY++  +F          W   G +VG
Sbjct: 349 -RVEHHDHA------VVSGRLAGENMTGAAKPYWHQSMF----------WSDLGPDVG 389

>pdb|4FDC|B Chain B, Crystal Structure Of The E493v Mutant Of Human Apoptosis Inducing Factor (Aif) Length = 514

Iteration: 1
 Score = 76.3 bits (186), Expect = 4e-14,   Method: Compositional matrix adjust.
 Identities = 93/377 (24%), Positives = 153/377 (40%), Gaps = 78/377 (20%)
Query: 79  RLCIVSKEAYAPYERPALTKGYLFPLDKKPARLPGFHTCVGSGGER----QTPEWY---- 130
           R+ IVS++   PY RP L+K   F  D    +   F     +G ER    Q P +Y    
Sbjct: 56  RVLIVSEDPELPYMRPPLSKELWFSDDPNVTKTLRFKQW--NGKERSIYFQPPSFYVSAQ 113
Query: 131 -----KEKGIEMIYQDPVTSIDIEKQTLITNSGKLLKYGSLIVATGCTASRFP--EKIGG 183
                +  G+ ++    V  +D+    +  N G  + Y   ++ATG T       ++ G 
Sbjct: 114 DLPHIENGGVAVLTGKKVVQLDVRDNMVKLNDGSQITYEKCLIATGGTPRSLSAIDRAGA 173
Query: 184 YLPG-VHYIRDVADADALISSLEKAKKXXXXXXXYIGMEVAAA------AVG-------- 228
            +       R + D  +L     + K        ++G E+A A      A+G        
Sbjct: 174 EVKSRTTLFRKIGDFRSLEKISREVKSITIIGGGFLGSELACALGRKARALGTEVIQLFP 233
Query: 229 ---------------WKLDTTRYEQLYQQNGVKFVKGASIKNLEAGSDGRVAAVKLEDGS 273
                          W ++  R E      GVK +  A ++++   S G++  +KL+DG 
Sbjct: 234 EKGNMGKILPEYLSNWTMEKVRRE------GVKVMPNAIVQSVGV-SSGKL-LIKLKDGR 285
Query: 274 TIDADTIVIGIGAKPTVSPFERVGL--NSSVGGIQVDGQFRTRMPGIFAIGDVAAF-PLK 330
            ++ D IV  +G +P V   +  GL  +S  GG +V+ + + R   I+  GD A F  +K
Sbjct: 286 KVETDHIVAAVGLEPNVELAKTGGLEIDSDFGGFRVNAELQARS-NIWVAGDAACFYDIK 344
Query: 331 MYDRTARVEHVDHARQSAQHCIKALLSAQTHTYDYLPYFYSRVFEYEGSPRKVWWQFFGD 390
           +  R  RVEH DHA       +   L+ +  T    PY++  +F          W   G 
Sbjct: 345 LGRR--RVEHHDHA------VVSGRLAGENMTGAAKPYWHQSMF----------WSDLGP 386
Query: 391 NVGETIEIGNFDPKIAT 407
           +VG  + IG  D  + T
Sbjct: 387 DVG-YVAIGLVDSSLPT 402

>pdb|3GD3|A Chain A, Crystal Structure Of A Naturally Folded Murine Apoptosis Inducing Factor Length = 535

Iteration: 1
 Score = 76.3 bits (186), Expect = 4e-14,   Method: Compositional matrix adjust.
 Identities = 89/358 (24%), Positives = 147/358 (41%), Gaps = 67/358 (18%)
Query: 79  RLCIVSKEAYAPYERPALTKGYLFPLDKKPARLPGFHTCVGSGGER----QTPEWY---- 130
           R+ IVS++   PY RP L+K   F  D    +   F     +G ER    Q P +Y    
Sbjct: 80  RVLIVSEDPELPYMRPPLSKELWFSDDPNVTKTLQFRQW--NGKERSIYFQPPSFYVSAQ 137
Query: 131 -----KEKGIEMIYQDPVTSIDIEKQTLITNSGKLLKYGSLIVATGCTASRFP--EKIGG 183
                +  G+ ++    V  +D+    +  N G  + +   ++ATG T       ++ G 
Sbjct: 138 DLPNIENGGVAVLTGKKVVHLDVRGNMVKLNDGSQITFEKCLIATGGTPRSLSAIDRAGA 197
Query: 184 YLPG-VHYIRDVADADALISSLEKAKKXXXXXXXYIGMEVAAAAVGWKLDTTRYE--QLY 240
            +       R + D  AL     + K        ++G E+ A A+G K   +  E  QL+
Sbjct: 198 EVKSRTTLFRKIGDFRALEKISREVKSITVIGGGFLGSEL-ACALGRKSQASGIEVIQLF 256
Query: 241 ----------------------QQNGVKFVKGASIKNLEAGSDGRVAAVKLEDGSTIDAD 278
                                 ++ GVK +  A ++++  G  G    +KL+DG  ++ D
Sbjct: 257 PEKGNMGKILPQYLSNWTMEKVKREGVKVMPNAIVQSV--GVSGGRLLIKLKDGRKVETD 314
Query: 279 TIVIGIGAKPTVSPFERVGL--NSSVGGIQVDGQFRTRMPGIFAIGDVAAF-PLKMYDRT 335
            IV  +G +P V   +  GL  +S  GG +V+ + + R   I+  GD A F  +K+  R 
Sbjct: 315 HIVTAVGLEPNVELAKTGGLEIDSDFGGFRVNAELQAR-SNIWVAGDAACFYDIKLGRR- 372
Query: 336 ARVEHVDHARQSAQHCIKALLSAQTHTYDYLPYFYSRVFEYEGSPRKVWWQFFGDNVG 393
            RVEH DHA       +   L+ +  T    PY++  +F          W   G +VG
Sbjct: 373 -RVEHHDHA------VVSGRLAGENMTGAAKPYWHQSMF----------WSDLGPDVG 413

>pdb|1GV4|A Chain A, Murine Apoptosis-Inducing Factor (Aif) Length = 528

Iteration: 1
 Score = 75.9 bits (185), Expect = 4e-14,   Method: Compositional matrix adjust.
 Identities = 89/358 (24%), Positives = 147/358 (41%), Gaps = 67/358 (18%)
Query: 79  RLCIVSKEAYAPYERPALTKGYLFPLDKKPARLPGFHTCVGSGGER----QTPEWY---- 130
           R+ IVS++   PY RP L+K   F  D    +   F     +G ER    Q P +Y    
Sbjct: 75  RVLIVSEDPELPYMRPPLSKELWFSDDPNVTKTLQFRQW--NGKERSIYFQPPSFYVSAQ 132
Query: 131 -----KEKGIEMIYQDPVTSIDIEKQTLITNSGKLLKYGSLIVATGCTASRFP--EKIGG 183
                +  G+ ++    V  +D+    +  N G  + +   ++ATG T       ++ G 
Sbjct: 133 DLPNIENGGVAVLTGKKVVHLDVRGNMVKLNDGSQITFEKCLIATGGTPRSLSAIDRAGA 192
Query: 184 YLPG-VHYIRDVADADALISSLEKAKKXXXXXXXYIGMEVAAAAVGWKLDTTRYE--QLY 240
            +       R + D  AL     + K        ++G E+ A A+G K   +  E  QL+
Sbjct: 193 EVKSRTTLFRKIGDFRALEKISREVKSITVIGGGFLGSEL-ACALGRKSQASGIEVIQLF 251
Query: 241 ----------------------QQNGVKFVKGASIKNLEAGSDGRVAAVKLEDGSTIDAD 278
                                 ++ GVK +  A ++++  G  G    +KL+DG  ++ D
Sbjct: 252 PEKGNMGKILPQYLSNWTMEKVKREGVKVMPNAIVQSV--GVSGGRLLIKLKDGRKVETD 309
Query: 279 TIVIGIGAKPTVSPFERVGL--NSSVGGIQVDGQFRTRMPGIFAIGDVAAF-PLKMYDRT 335
            IV  +G +P V   +  GL  +S  GG +V+ + + R   I+  GD A F  +K+  R 
Sbjct: 310 HIVTAVGLEPNVELAKTGGLEIDSDFGGFRVNAELQAR-SNIWVAGDAACFYDIKLGRR- 367
Query: 336 ARVEHVDHARQSAQHCIKALLSAQTHTYDYLPYFYSRVFEYEGSPRKVWWQFFGDNVG 393
            RVEH DHA       +   L+ +  T    PY++  +F          W   G +VG
Sbjct: 368 -RVEHHDHA------VVSGRLAGENMTGAAKPYWHQSMF----------WSDLGPDVG 408

>pdb|1M6I|A Chain A, Crystal Structure Of Apoptosis Inducing Factor (Aif) Length = 493

Iteration: 1
 Score = 74.3 bits (181), Expect = 1e-13,   Method: Compositional matrix adjust.
 Identities = 89/363 (24%), Positives = 147/363 (40%), Gaps = 77/363 (21%)
Query: 79  RLCIVSKEAYAPYERPALTKGYLFPLDKKPARLPGFHTCVGSGGER----QTPEWY---- 130
           R+ IVS++   PY RP L+K   F  D    +   F     +G ER    Q P +Y    
Sbjct: 38  RVLIVSEDPELPYMRPPLSKELWFSDDPNVTKTLRFKQW--NGKERSIYFQPPSFYVSAQ 95
Query: 131 -----KEKGIEMIYQDPVTSIDIEKQTLITNSGKLLKYGSLIVATGCTASRFP--EKIGG 183
                +  G+ ++    V  +D+    +  N G  + Y   ++ATG T       ++ G 
Sbjct: 96  DLPHIENGGVAVLTGKKVVQLDVRDNMVKLNDGSQITYEKCLIATGGTPRSLSAIDRAGA 155
Query: 184 YLPG-VHYIRDVADADALISSLEKAKKXXXXXXXYIGMEVAAA------AVG-------- 228
            +       R + D  +L     + K        ++G E+A A      A+G        
Sbjct: 156 EVKSRTTLFRKIGDFRSLEKISREVKSITIIGGGFLGSELACALGRKARALGTEVIQLFP 215
Query: 229 ---------------WKLDTTRYEQLYQQNGVKFVKGASIKNLEAGSDGRVAAVKLEDGS 273
                          W ++  R E      GVK +  A ++++   S G++  +KL+DG 
Sbjct: 216 EKGNMGKILPEYLSNWTMEKVRRE------GVKVMPNAIVQSVGV-SSGKL-LIKLKDGR 267
Query: 274 TIDADTIVIGIGAKPTVSPFERVGL--NSSVGGIQVDGQFRTRMPGIFAIGDVAAF-PLK 330
            ++ D IV  +G +P V   +  GL  +S  GG +V+ + + R   I+  GD A F  +K
Sbjct: 268 KVETDHIVAAVGLEPNVELAKTGGLEIDSDFGGFRVNAELQAR-SNIWVAGDAACFYDIK 326
Query: 331 MYDRTARVEHVDHARQSAQHCIKALLSAQTHTYDYLPYFYSRVFEYEGSPRKVWWQFFGD 390
           +  R  RVEH DHA       +   L+ +  T    PY++  +F          W   G 
Sbjct: 327 LGRR--RVEHHDHA------VVSGRLAGENMTGAAKPYWHQSMF----------WSDLGP 368
Query: 391 NVG 393
           +VG
Sbjct: 369 DVG 371

>pdb|3IWA|A Chain A, Crystal Structure Of A Fad-Dependent Pyridine Nucleotide-Disulphide Oxidoreductase From Desulfovibrio Vulgaris Length = 472

Iteration: 1
 Score = 70.5 bits (171), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 67/233 (28%), Positives = 106/233 (45%), Gaps = 32/233 (13%)
Query: 125 QTPEWYK-EKGIEMIYQDPVTSID-----IEKQTLITNSGKLLKYGSLIVATGCTASRFP 178
           + PE+++  K +E + +    +ID     +E + L T   + LKY  L++A G  A+R P
Sbjct: 70  RDPEFFRINKDVEALVETRAHAIDRAAHTVEIENLRTGERRTLKYDKLVLALGSKANRPP 129
Query: 179 EKIGGYLPGVHYIRDVADADALISSLE--KAKKXXXXXXXYIGMEVAAA-AVGWKLDTTR 235
            + G  L GV  + ++ +A+ +  ++   +  K       +IG+E+A + A  W +DTT 
Sbjct: 130 VE-GMDLAGVTPVTNLDEAEFVQHAISAGEVSKAVIVGGGFIGLEMAVSLADMWGIDTTV 188
Query: 236 YEQLYQ-------------------QNGVKFVKGASIKNLEAGSDGRVAAVKLEDGSTID 276
            E   Q                   +N V    G  +  LE G +G+VA V + D  T+D
Sbjct: 189 VELADQIMPGFTSKSLSQMLRHDLEKNDVVVHTGEKVVRLE-GENGKVARV-ITDKRTLD 246
Query: 277 ADTIVIGIGAKPTVSPFERVGLN-SSVGGIQVDGQFRTRMPGIFAIGDVAAFP 328
           AD +++  G  P        GL     G I VD + RT  P IFA GD    P
Sbjct: 247 ADLVILAAGVSPNTQLARDAGLELDPRGAIIVDTRMRTSDPDIFAGGDCVTIP 299

>pdb|1XHC|A Chain A, Nadh Oxidase /nitrite Reductase From Pyrococcus Furiosus Pfu-1140779- 001 Length = 367

Iteration: 1
 Score = 65.1 bits (157), Expect = 7e-11,   Method: Compositional matrix adjust.
 Identities = 75/313 (23%), Positives = 137/313 (43%), Gaps = 52/313 (16%)
Query: 128 EWYKEKGIEMIYQDPVTSIDIEKQTLITNSGKLLKYGSLIVATGCTASRFPEKIGGYLPG 187
           +WY+++GIE+   +    ID  ++ +IT  G+ + Y +L++ATG  A R P+     + G
Sbjct: 68  DWYRKRGIEIRLAEEAKLIDRGRKVVITEKGE-VPYDTLVLATGARA-REPQ-----IKG 120
Query: 188 VHY---IRDVADADALISSLEKAKKXXXXXXXYIGMEVAA--AAVGWKLD---------- 232
             Y   +R + DAD +  S+E + +       +IG+E+A   A  G+ +           
Sbjct: 121 KEYLLTLRTIFDADRIKESIENSGEAIIIGGGFIGLELAGNLAEAGYHVKLIHRGAMFLG 180
Query: 233 -----TTRYEQLYQQNGVKFVKGASIKNLEAGSDGRVAAVKLEDGSTIDADTIVIGIGAK 287
                +   + + ++ GVKF   + +  LEA  +G      L +   I+    +  IG  
Sbjct: 181 LDEELSNMIKDMLEETGVKFFLNSEL--LEANEEG-----VLTNSGFIEGKVKICAIGIV 233
Query: 288 PTVSPFERVGLNSSVGGIQVDGQFRTRMPGIFAIGDVAAFPLKMYDRTARVEHVDHARQS 347
           P V    R G+++   GI +D  FRT    ++AIGD A +       +  +     A   
Sbjct: 234 PNVDLARRSGIHTG-RGILIDDNFRTSAKDVYAIGDCAEY-------SGIIAGTAKAAME 285
Query: 348 AQHCIKALLSAQTHTYDYLPYFYSRVFEYEGSPRKVWWQFFGDNVGETIEIGNFDPKIAT 407
               +  +L  +   Y++   F S VF++     K+     G+  GE    G +      
Sbjct: 286 QARVLADILKGEPRRYNF--KFRSTVFKFG----KLQIAIIGNTKGE----GKWIEDNTK 335
Query: 408 FWIDSGKLKGVLV 420
            + ++GK+ G +V
Sbjct: 336 VFYENGKIIGAVV 348

>pdb|3CGC|A Chain A, Pyridine Nucleotide Complexes With Bacillus Anthracis Coenzyme A- Disulfide Reductase: A Structural Analysis Of Dual Nad(p)h Specificity Length = 480

Iteration: 1
 Score = 62.0 bits (149), Expect = 7e-10,   Method: Compositional matrix adjust.
 Identities = 74/302 (24%), Positives = 127/302 (42%), Gaps = 48/302 (15%)
Query: 54  FVIVGGGNAAGYAARTFVEHGMADGRLCIVSKE-----AYAPYERPALTKGYLFPLDKKP 108
           +VI+GG  A   AA   V +   D    +V+ E     +YA    P +  G +   +K  
Sbjct: 39  YVIIGGDAAGMSAAMQIVRN---DENANVVTLEKGEIYSYAQCGLPYVISGAIASTEKLI 95
Query: 109 ARLPGFHTCVGSGGERQTPEWYKEKGIEMIYQDPVTSIDIEKQTLITNSGKL-----LKY 163
           AR                  +  + GI+   +  VT +D EK+ +     K        Y
Sbjct: 96  AR--------------NVKTFRDKYGIDAKVRHEVTKVDTEKKIVYAEHTKTKDVFEFSY 141
Query: 164 GSLIVATGCTASRFPEKIGGYLPGVHYIRDVADADALISSLE--KAKKXXXXXXXYIGME 221
             L++ATG      PE  G  L GVH ++ + DA+ ++ +LE  K +         IG+E
Sbjct: 142 DRLLIATGVRPV-MPEWEGRDLQGVHLLKTIPDAERILKTLETNKVEDVTIIGGGAIGLE 200
Query: 222 VAAAAV---------------GWKLDTTRYEQLYQQNGVKFVKGASIKNLEA-GSDGRVA 265
           +A   V               G   D    E +Y++     ++  + +N++A   + RV 
Sbjct: 201 MAETFVELGKKVRMIERNDHIGTIYDGDMAEYIYKEADKHHIEILTNENVKAFKGNERVE 260
Query: 266 AVKLEDGSTIDADTIVIGIGAKPTVSPFERVGLNSS-VGGIQVDGQFRTRMPGIFAIGDV 324
           AV+ + G T  AD +++ +G KP     E   + ++  G I+V+   +T +  ++A GD 
Sbjct: 261 AVETDKG-TYKADLVLVSVGVKPNTDFLEGTNIRTNHKGAIEVNAYMQTNVQDVYAAGDC 319
Query: 325 AA 326
           A 
Sbjct: 320 AT 321

>pdb|3CGB|A Chain A, Pyridine Nucleotide Complexes With Bacillus Anthracis Coenzyme A- Disulfide Reductase: A Structural Analysis Of Dual Nad(P)h Specificity Length = 480

Iteration: 1
 Score = 58.2 bits (139), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 57/227 (25%), Positives = 100/227 (44%), Gaps = 26/227 (11%)
Query: 124 RQTPEWYKEKGIEMIYQDPVTSIDIEKQTLITNSGKL-----LKYGSLIVATGCTASRFP 178
           R    +  + GI+   +  VT +D EK+ +     K        Y  L++ATG      P
Sbjct: 97  RNVKTFRDKYGIDAKVRHEVTKVDTEKKIVYAEHTKTKDVFEFSYDRLLIATGVRPV-XP 155
Query: 179 EKIGGYLPGVHYIRDVADADALISSLE--KAKKXXXXXXXYIGMEVAAAAV--------- 227
           E  G  L GVH ++ + DA+ ++ +LE  K +         IG+E A   V         
Sbjct: 156 EWEGRDLQGVHLLKTIPDAERILKTLETNKVEDVTIIGGGAIGLEXAETFVELGKKVRXI 215
Query: 228 ------GWKLDTTRYEQLYQQNGVKFVKGASIKNLEA-GSDGRVAAVKLEDGSTIDADTI 280
                 G   D    E +Y++     ++  + +N++A   + RV AV+ + G T  AD +
Sbjct: 216 ERNDHIGTIYDGDXAEYIYKEADKHHIEILTNENVKAFKGNERVEAVETDKG-TYKADLV 274
Query: 281 VIGIGAKPTVSPFERVGLNSS-VGGIQVDGQFRTRMPGIFAIGDVAA 326
           ++ +G KP     E   + ++  G I+V+   +T +  ++A GD A 
Sbjct: 275 LVSVGVKPNTDFLEGTNIRTNHKGAIEVNAYXQTNVQDVYAAGDCAT 321

>pdb|2EQ7|A Chain A, Crystal Structure Of Lipoamide Dehydrogenase From Thermus Thermophilus Hb8 With Psbdo Length = 455

Iteration: 1
 Score = 56.6 bits (135), Expect = 3e-08,   Method: Compositional matrix adjust.
 Identities = 58/218 (26%), Positives = 100/218 (45%), Gaps = 34/218 (15%)
Query: 149 EKQTLITNSGKLLKYGSLIVATGCTASRFPEKIGGYLPGVHYIRDVADADALISSLEKAK 208
           E++ L+  +G+ L+   +++ATG +A   P         V Y R V   +AL S  E  K
Sbjct: 116 ERKVLVEETGEELEARYILIATG-SAPLIPP-----WAQVDYERVVTSTEAL-SFPEVPK 168
Query: 209 KXXXXXXXYIGMEVAAA--AVGWKLDTTRY----------------EQLYQQNGVKFVKG 250
           +        IG+E+      +G ++    Y                E+++++ G+    G
Sbjct: 169 RLIVVGGGVIGLELGVVWHRLGAEVIVLEYMDRILPTMDLEVSRAAERVFKKQGLTIRTG 228
Query: 251 ASIKNLEAGSDGRVAAVKLEDGSTIDADTIVIGIGAKPTVS--PFERVGLNS-SVGGIQV 307
             +  +   + G  A V+LE G  ++AD +++ +G +P       E  GL++   G I V
Sbjct: 229 VRVTAVVPEAKG--ARVELEGGEVLEADRVLVAVGRRPYTEGLSLENAGLSTDERGRIPV 286
Query: 308 DGQFRTRMPGIFAIGDVAAFPLKMYDRT----ARVEHV 341
           D   RTR+P I+AIGDV   P+  +  +    A VEH+
Sbjct: 287 DEHLRTRVPHIYAIGDVVRGPMLAHKASEEGIAAVEHM 324

>pdb|1EBD|A Chain A, Dihydrolipoamide Dehydrogenase Complexed With The Binding Domain Of The Dihydrolipoamide Acetylase Length = 455

Iteration: 1
 Score = 53.5 bits (127), Expect = 3e-07,   Method: Compositional matrix adjust.
 Identities = 52/195 (26%), Positives = 84/195 (43%), Gaps = 30/195 (15%)
Query: 156 NSGKLLKYGSLIVATGCTASRFPEKIGGYLPGVHYIRDVADADALISSLEKAKKXXXXXX 215
           +S +   + + I+ATG   SR  E     LP   +   + D+   ++  E  K       
Sbjct: 127 DSAQTYTFKNAIIATG---SRPIE-----LPNFKFSNRILDSTGALNLGEVPKSLVVIGG 178
Query: 216 XYIGMEVAAAAVGWKLDTTRYE------------------QLYQQNGVKFVKGASIKNLE 257
            YIG+E+  A   +    T  E                  +  ++ GV+ V  A  K  E
Sbjct: 179 GYIGIELGTAYANFGTKVTILEGAGEILSGFEKQMAAIIKKRLKKKGVEVVTNALAKGAE 238
Query: 258 AGSDGRVAAVKLE-DGSTIDADTIVIGIGAKPTVSPF--ERVGLN-SSVGGIQVDGQFRT 313
              DG     +   +  TIDAD +++ +G +P       E++G+  ++ G I+VD Q RT
Sbjct: 239 EREDGVTVTYEANGETKTIDADYVLVTVGRRPNTDELGLEQIGIKMTNRGLIEVDQQCRT 298
Query: 314 RMPGIFAIGDVAAFP 328
            +P IFAIGD+   P
Sbjct: 299 SVPNIFAIGDIVPGP 313

>pdb|2CDU|A Chain A, The Crystal Structure Of Water-Forming Nad(P)h Oxidase From Lactobacillus Sanfranciscensis Length = 452

Iteration: 1
 Score = 52.8 bits (125), Expect = 4e-07,   Method: Compositional matrix adjust.
 Identities = 62/231 (26%), Positives = 92/231 (39%), Gaps = 39/231 (16%)
Query: 126 TPEWYKEKGIEMIYQDPVTSIDIEKQT-----LITNSGKLLKYGSLIVATGCTASRFPEK 180
           +PE     G  +  +  VT++D E +T     LITN  K   Y  LI+ TG   +  P  
Sbjct: 64  SPEELSNLGANVQMRHQVTNVDPETKTIKVKDLITNEEKTEAYDKLIMTTGSKPTVPP-- 121
Query: 181 IGGYLPG-----VHYIRDVADADALISSLEKAKKXXXXXXXYIGMEVAAA---------- 225
               +PG     V+  ++  DA  L     KAK        YIG E+A A          
Sbjct: 122 ----IPGIDSSRVYLCKNYNDAKKLFEEAPKAKTITIIGSGYIGAELAEAYSNQNYNVNL 177
Query: 226 -----AVGWKLDTTRYEQL----YQQNGVKFVKGASIKNLEAGSDGRVAAVKLEDGSTID 276
                 V +K     +  +    Y+ +GV  V G+ +   E   D  +   K  DG  I 
Sbjct: 178 IDGHERVLYKYFDKEFTDILAKDYEAHGVNLVLGSKVAAFEEVDDEIIT--KTLDGKEIK 235
Query: 277 ADTIVIGIGAKPTVSPFE-RVGLNSSVGGIQVDGQFRTRMPGIFAIGDVAA 326
           +D  ++ IG +P     + +V +  + G I  D    +    IFA GD AA
Sbjct: 236 SDIAILCIGFRPNTELLKGKVAMLDN-GAIITDEYMHSSNRDIFAAGDSAA 285

>pdb|4GCM|A Chain A, Crystal Structure Of A Thioredoxine Reductase (Trxb) From Staphylococcus Aureus Subsp. Aureus Mu50 At 1.80 A Resolution Length = 312

Iteration: 1
 Score = 52.0 bits (123), Expect = 8e-07,   Method: Compositional matrix adjust.
 Identities = 63/235 (26%), Positives = 100/235 (42%), Gaps = 27/235 (11%)
Query: 110 RLPGFHTCVGSGGERQTPEWYKEKGIEMIYQDPVTSIDIEKQTLITNSGKLLKYGSLIVA 169
             PGF    G     +  E  K+ G    Y D  +  D  +  +I    K L   ++I+A
Sbjct: 52  NFPGFEXITGPDLSTKXFEHAKKFGAVYQYGDIKSVEDKGEYKVINFGNKELTAKAVIIA 111
Query: 170 TGCTASRFPEKIGGYLPGVHYI--RDVADADALISSLEKAKK--------XXXXXXXYIG 219
           TG       +KIG  +PG   +  R V+       +  K K+               ++ 
Sbjct: 112 TGAEY----KKIG--VPGEQELGGRGVSYCAVCDGAFFKNKRLFVIGGGDSAVEEGTFLT 165
Query: 220 MEVAAAAVGWKLDTTRYEQLYQQNGVK-----FVKGASIKNLEAGSDGRVAAVKL---ED 271
                  +  + D  R +++ Q    K     F+   ++K++    DG+V +V L   +D
Sbjct: 166 KFADKVTIVHRRDELRAQRILQDRAFKNDKIDFIWSHTLKSINE-KDGKVGSVTLTSTKD 224
Query: 272 GS--TIDADTIVIGIGAKPTVSPFERVGLNSSVGGIQVDGQFRTRMPGIFAIGDV 324
           GS  T +AD + I IG KP  +PF+ +G+ + VG I       T +PGIFA GDV
Sbjct: 225 GSEETHEADGVFIYIGXKPLTAPFKDLGITNDVGYIVTKDDXTTSVPGIFAAGDV 279

>pdb|1NDA|A Chain A, The Structure Of Trypanosoma Cruzi Trypanothione Reductase In The Oxidized And Nadph Reduced State Length = 491

Iteration: 1
 Score = 51.2 bits (121), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 39/132 (29%), Positives = 61/132 (46%), Gaps = 18/132 (13%)
Query: 231 LDTTRYEQLYQQ---NGVKFVKGASIKNLEAGSDGRVAAVKLEDGSTIDADTIVIGIGAK 287
            D T  E+L +Q   NG++ +   +   +E  +DG   +V  E G  +D D +++ IG  
Sbjct: 230 FDHTLREELTKQLTANGIQILTKENPAKVELNADGS-KSVTFESGKKMDFDLVMMAIGRS 288
Query: 288 PTVSPFE--RVGLNSSVGGIQVDGQFRTRMPGIFAIGDVA----AFPLKMYDRTARVEHV 341
           P     +    G+    GG+QVD   RT +  I+AIGDV       P+ + +  A V+ V
Sbjct: 289 PRTKDLQLQNAGVMIKNGGVQVDEYSRTNVSNIYAIGDVTNRVMLTPVAINEAAALVDTV 348
Query: 342 --------DHAR 345
                   DH R
Sbjct: 349 FGTNPRKTDHTR 360

>pdb|1GXF|A Chain A, Crystal Structure Of Trypanosoma Cruzi Trypanothione Reductase In Complex With The Inhibitor Quinacrine Mustard Length = 492

Iteration: 1
 Score = 50.8 bits (120), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 39/132 (29%), Positives = 61/132 (46%), Gaps = 18/132 (13%)
Query: 231 LDTTRYEQLYQQ---NGVKFVKGASIKNLEAGSDGRVAAVKLEDGSTIDADTIVIGIGAK 287
            D T  E+L +Q   NG++ +   +   +E  +DG   +V  E G  +D D +++ IG  
Sbjct: 231 FDHTLREELTKQLTANGIQILTKENPAKVELNADGS-KSVTFESGKKMDFDLVMMAIGRS 289
Query: 288 PTVSPFE--RVGLNSSVGGIQVDGQFRTRMPGIFAIGDVA----AFPLKMYDRTARVEHV 341
           P     +    G+    GG+QVD   RT +  I+AIGDV       P+ + +  A V+ V
Sbjct: 290 PRTKDLQLQNAGVMIKNGGVQVDEYSRTNVSNIYAIGDVTNRVMLTPVAINEAAALVDTV 349
Query: 342 --------DHAR 345
                   DH R
Sbjct: 350 FGTTPRKTDHTR 361

>pdb|1BZL|A Chain A, Crystal Structure Of Trypanosoma Cruzi Trypanothione Reductase In Complex With Trypanothione, And The Structure- Based Discovery Of New Natural Product Inhibitors Length = 486

Iteration: 1
 Score = 50.8 bits (120), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 39/132 (29%), Positives = 61/132 (46%), Gaps = 18/132 (13%)
Query: 231 LDTTRYEQLYQQ---NGVKFVKGASIKNLEAGSDGRVAAVKLEDGSTIDADTIVIGIGAK 287
            D T  E+L +Q   NG++ +   +   +E  +DG   +V  E G  +D D +++ IG  
Sbjct: 230 FDHTLREELTKQLTANGIQILTKENPAKVELNADGS-KSVTFESGKKMDFDLVMMAIGRS 288
Query: 288 PTVSPFE--RVGLNSSVGGIQVDGQFRTRMPGIFAIGDVA----AFPLKMYDRTARVEHV 341
           P     +    G+    GG+QVD   RT +  I+AIGDV       P+ + +  A V+ V
Sbjct: 289 PRTKDLQLQNAGVMIKNGGVQVDEYSRTNVSNIYAIGDVTNRVMLTPVAINEAAALVDTV 348
Query: 342 --------DHAR 345
                   DH R
Sbjct: 349 FGTTPRKTDHTR 360

>pdb|1AOG|A Chain A, Trypanosoma Cruzi Trypanothione Reductase (Oxidized Form) Length = 485

Iteration: 1
 Score = 50.8 bits (120), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 39/132 (29%), Positives = 61/132 (46%), Gaps = 18/132 (13%)
Query: 231 LDTTRYEQLYQQ---NGVKFVKGASIKNLEAGSDGRVAAVKLEDGSTIDADTIVIGIGAK 287
            D T  E+L +Q   NG++ +   +   +E  +DG   +V  E G  +D D +++ IG  
Sbjct: 229 FDHTLREELTKQLTANGIQILTKENPAKVELNADGS-KSVTFESGKKMDFDLVMMAIGRS 287
Query: 288 PTVSPFE--RVGLNSSVGGIQVDGQFRTRMPGIFAIGDVA----AFPLKMYDRTARVEHV 341
           P     +    G+    GG+QVD   RT +  I+AIGDV       P+ + +  A V+ V
Sbjct: 288 PRTKDLQLQNAGVMIKNGGVQVDEYSRTNVSNIYAIGDVTNRVMLTPVAINEAAALVDTV 347
Query: 342 --------DHAR 345
                   DH R
Sbjct: 348 FGTTPRKTDHTR 359

>pdb|2WBA|A Chain A, Properties Of Trypanothione Reductase From T. Brucei Length = 492

Iteration: 1
 Score = 50.8 bits (120), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 39/133 (29%), Positives = 64/133 (48%), Gaps = 19/133 (14%)
Query: 231 LDTTRYEQLYQQ---NGVKFVKGASIKNLEAGSDGRVAAVKLEDGSTIDADTIVIGIGAK 287
            D T  E++ +Q   NG++ +   +   +   +DG    V  E G T+D D +++ IG  
Sbjct: 230 FDETIREEVTKQLTANGIEIMTNENPAKVSLNTDGS-KHVTFESGKTLDVDVVMMAIGRI 288
Query: 288 PTVSPFE--RVGLN-SSVGGIQVDGQFRTRMPGIFAIGDVA----AFPLKMYDRTARVEH 340
           P  +  +   VG+  +  GG+QVD   RT +P I+AIGD+       P+ + +  A V+ 
Sbjct: 289 PRTNDLQLGNVGVKLTPKGGVQVDEFSRTNVPNIYAIGDITDRLMLTPVAINEGAALVDT 348
Query: 341 V--------DHAR 345
           V        DH R
Sbjct: 349 VFGNKPRKTDHTR 361

>pdb|2WOI|A Chain A, Trypanothione Reductase From Trypanosoma Brucei Length = 495

Iteration: 1
 Score = 50.8 bits (120), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 39/133 (29%), Positives = 64/133 (48%), Gaps = 19/133 (14%)
Query: 231 LDTTRYEQLYQQ---NGVKFVKGASIKNLEAGSDGRVAAVKLEDGSTIDADTIVIGIGAK 287
            D T  E++ +Q   NG++ +   +   +   +DG    V  E G T+D D +++ IG  
Sbjct: 233 FDETIREEVTKQLTANGIEIMTNENPAKVSLNTDGS-KHVTFESGKTLDVDVVMMAIGRI 291
Query: 288 PTVSPFE--RVGLN-SSVGGIQVDGQFRTRMPGIFAIGDVA----AFPLKMYDRTARVEH 340
           P  +  +   VG+  +  GG+QVD   RT +P I+AIGD+       P+ + +  A V+ 
Sbjct: 292 PRTNDLQLGNVGVKLTPKGGVQVDEFSRTNVPNIYAIGDITDRLMLTPVAINEGAALVDT 351
Query: 341 V--------DHAR 345
           V        DH R
Sbjct: 352 VFGNKPRKTDHTR 364

>pdb|3NTD|A Chain A, Structure Of The Shewanella Loihica Pv-4 Nadh-Dependent Persulfide Reductase C531s Mutant Length = 565

Iteration: 1
 Score = 50.8 bits (120), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 54/243 (22%), Positives = 99/243 (40%), Gaps = 45/243 (18%)
Query: 125 QTPEWYKEK-GIEMIYQDPVTSID-----IEKQTLITNSGKLLKYGSLIVATGCTASRFP 178
           QTPE +K +  +E+  +  V +ID     +  + L+  S     Y +L+++ G  A   P
Sbjct: 62  QTPESFKARFNVEVRVKHEVVAIDRAAKLVTVRRLLDGSEYQESYDTLLLSPGA-APIVP 120
Query: 179 EKIGGYLPGVHYIRDVADADALISSLE--KAKKXXXXXXXYIGMEVAAAAVGWKLDTTRY 236
              G   P  H +R++ D D ++ +++    +        +IG+E+  +     + TT  
Sbjct: 121 PIPGVDNPLTHSLRNIPDMDRILQTIQMNNVEHATVVGGGFIGLEMMESLHHLGIKTTLL 180
Query: 237 E------------------QLYQQNGVKFVKGASIKNLE-----------AGSDGRVAAV 267
           E                  Q  +  GV    G ++  +            AG D     +
Sbjct: 181 ELADQVMTPVDREMAGFAHQAIRDQGVDLRLGTALSEVSYQVQTHVASDAAGEDTAHQHI 240
Query: 268 K------LEDGSTIDADTIVIGIGAKPTVSPFERVGLN-SSVGGIQVDGQFRTRMPGIFA 320
           K      L +G  ++ D +++ IG +P        GL    +GGI+V+   +T  P I+A
Sbjct: 241 KGHLSLTLSNGELLETDLLIMAIGVRPETQLARDAGLAIGELGGIKVNAMMQTSDPAIYA 300
Query: 321 IGD 323
           +GD
Sbjct: 301 VGD 303

>pdb|3KLJ|A Chain A, Crystal Structure Of Nadh:rubredoxin Oxidoreductase From Clostridium Acetobutylicum Length = 385

Iteration: 1
 Score = 50.1 bits (118), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 69/286 (24%), Positives = 122/286 (42%), Gaps = 38/286 (13%)
Query: 53  EFVIVGGGNAAGYAARTFVEHGMADGRLCIVSKEAYAPYERPALTKGYLFPLDKKPARLP 112
           + +I+G G A   AA+  +  G  D  + +++ E Y PY RP L +     +  K   + 
Sbjct: 11  KILILGAGPAGFSAAKAAL--GKCDD-ITMINSEKYLPYYRPRLNE-----IIAKNKSID 62
Query: 113 GFHTCVGSGGERQTPEWYKEKGIEMIYQDPVTSIDIEKQTLITNSGKLLKYGSLIVATGC 172
                       +  +WY++  I++I  +  TSID   + +   SG+ +KY  LI+A+G 
Sbjct: 63  DILI--------KKNDWYEKNNIKVITSEFATSIDPNNKLVTLKSGEKIKYEKLIIASGS 114
Query: 173 TASRFPEKIGGYLPGVHYIRDVADADALISSLEKAK---KXXXXXXXYIGMEVAA----- 224
            A++        +P    I  +   D  +   ++ K   K        +G+E+A      
Sbjct: 115 IANKIK------VPHADEIFSLYSYDDALKIKDECKNKGKAFIIGGGILGIELAQAIIDS 168
Query: 225 ---AAVGWKLDTTRYEQLYQQNGVKFVKGASIKNLEAGSDGRVAAVKLEDGSTIDADTIV 281
              A++G  L+     QL +  G+ F+K    K    G      +   E G  I +  ++
Sbjct: 169 GTPASIGIILEYPLERQLDRDGGL-FLKD---KLDRLGIKIYTNSNFEEMGDLIRSSCVI 224
Query: 282 IGIGAKPTVSPFERVGLNSSVGGIQVDGQFRTRMPGIFAIGDVAAF 327
             +G KP +   +   + +S  GI V+    T +  I+A GDVA F
Sbjct: 225 TAVGVKPNLDFIKDTEI-ASKRGILVNDHMETSIKDIYACGDVAEF 269

>pdb|1NHS|A Chain A, An L40c Mutation Converts The Cysteine-Sulfenic Acid Redox Centre In Enterococcal Nadh Peroxidase To A Disulfide Length = 447

Iteration: 1
 Score = 48.9 bits (115), Expect = 6e-06,   Method: Compositional matrix adjust.
 Identities = 30/115 (26%), Positives = 51/115 (44%), Gaps = 3/115 (2%)
Query: 241 QQNGVKFVKGASIKNLEAGSDGRVAAVKLEDGSTIDADTIVIGIGAKPTVSPFERVGLNS 300
           + N +    G +++  E   DGRV  V + D +  DAD +V+ +G +P  +  +      
Sbjct: 202 EANNITIATGETVERYEG--DGRVQKV-VTDKNAYDADLVVVAVGVRPNTAWLKGTLELH 258
Query: 301 SVGGIQVDGQFRTRMPGIFAIGDVAAFPLKMYDRTARVEHVDHARQSAQHCIKAL 355
             G I+ D   RT  P +FA+GD         D    +    +AR+  +  +K L
Sbjct: 259 PNGLIKTDEYMRTSEPDVFAVGDATLIKYNPADTEVNIALATNARKQGRFAVKNL 313

>pdb|1NHR|A Chain A, An L40c Mutation Converts The Cysteine-Sulfenic Acid Redox Centre In Enterococcal Nadh Peroxidase To A Disulfide Length = 447

Iteration: 1
 Score = 48.9 bits (115), Expect = 6e-06,   Method: Compositional matrix adjust.
 Identities = 30/115 (26%), Positives = 51/115 (44%), Gaps = 3/115 (2%)
Query: 241 QQNGVKFVKGASIKNLEAGSDGRVAAVKLEDGSTIDADTIVIGIGAKPTVSPFERVGLNS 300
           + N +    G +++  E   DGRV  V + D +  DAD +V+ +G +P  +  +      
Sbjct: 202 EANNITIATGETVERYEG--DGRVQKV-VTDKNAYDADLVVVAVGVRPNTAWLKGTLELH 258
Query: 301 SVGGIQVDGQFRTRMPGIFAIGDVAAFPLKMYDRTARVEHVDHARQSAQHCIKAL 355
             G I+ D   RT  P +FA+GD         D    +    +AR+  +  +K L
Sbjct: 259 PNGLIKTDEYMRTSEPDVFAVGDATLIKYNPADTEVNIALATNARKQGRFAVKNL 313

>pdb|1JOA|A Chain A, Nadh Peroxidase With Cysteine-Sulfenic Acid Length = 447

Iteration: 1
 Score = 48.9 bits (115), Expect = 6e-06,   Method: Compositional matrix adjust.
 Identities = 30/115 (26%), Positives = 51/115 (44%), Gaps = 3/115 (2%)
Query: 241 QQNGVKFVKGASIKNLEAGSDGRVAAVKLEDGSTIDADTIVIGIGAKPTVSPFERVGLNS 300
           + N +    G +++  E   DGRV  V + D +  DAD +V+ +G +P  +  +      
Sbjct: 202 EANNITIATGETVERYEG--DGRVQKV-VTDKNAYDADLVVVAVGVRPNTAWLKGTLELH 258
Query: 301 SVGGIQVDGQFRTRMPGIFAIGDVAAFPLKMYDRTARVEHVDHARQSAQHCIKAL 355
             G I+ D   RT  P +FA+GD         D    +    +AR+  +  +K L
Sbjct: 259 PNGLIKTDEYMRTSEPDVFAVGDATLIKYNPADTEVNIALATNARKQGRFAVKNL 313

>pdb|1NHQ|A Chain A, Crystallographic Analyses Of Nadh Peroxidase Cys42ala And Cys42ser Mutants: Active Site Structure, Mechanistic Implications, And An Unusual Environment Of Arg303 Length = 447

Iteration: 1
 Score = 48.9 bits (115), Expect = 6e-06,   Method: Compositional matrix adjust.
 Identities = 30/115 (26%), Positives = 51/115 (44%), Gaps = 3/115 (2%)
Query: 241 QQNGVKFVKGASIKNLEAGSDGRVAAVKLEDGSTIDADTIVIGIGAKPTVSPFERVGLNS 300
           + N +    G +++  E   DGRV  V + D +  DAD +V+ +G +P  +  +      
Sbjct: 202 EANNITIATGETVERYEG--DGRVQKV-VTDKNAYDADLVVVAVGVRPNTAWLKGTLELH 258
Query: 301 SVGGIQVDGQFRTRMPGIFAIGDVAAFPLKMYDRTARVEHVDHARQSAQHCIKAL 355
             G I+ D   RT  P +FA+GD         D    +    +AR+  +  +K L
Sbjct: 259 PNGLIKTDEYMRTSEPDVFAVGDATLIKYNPADTEVNIALATNARKQGRFAVKNL 313

>pdb|1NHP|A Chain A, Crystallographic Analyses Of Nadh Peroxidase Cys42ala And Cys42ser Mutants: Active Site Structure, Mechanistic Implications, And An Unusual Environment Of Arg303 Length = 447

Iteration: 1
 Score = 48.9 bits (115), Expect = 7e-06,   Method: Compositional matrix adjust.
 Identities = 30/115 (26%), Positives = 51/115 (44%), Gaps = 3/115 (2%)
Query: 241 QQNGVKFVKGASIKNLEAGSDGRVAAVKLEDGSTIDADTIVIGIGAKPTVSPFERVGLNS 300
           + N +    G +++  E   DGRV  V + D +  DAD +V+ +G +P  +  +      
Sbjct: 202 EANNITIATGETVERYEG--DGRVQKV-VTDKNAYDADLVVVAVGVRPNTAWLKGTLELH 258
Query: 301 SVGGIQVDGQFRTRMPGIFAIGDVAAFPLKMYDRTARVEHVDHARQSAQHCIKAL 355
             G I+ D   RT  P +FA+GD         D    +    +AR+  +  +K L
Sbjct: 259 PNGLIKTDEYMRTSEPDVFAVGDATLIKYNPADTEVNIALATNARKQGRFAVKNL 313

>pdb|3NTA|A Chain A, Structure Of The Shewanella Loihica Pv-4 Nadh-Dependent Persulfide Reductase Length = 574

Iteration: 1
 Score = 48.1 bits (113), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 54/243 (22%), Positives = 97/243 (39%), Gaps = 45/243 (18%)
Query: 125 QTPEWYKEK-GIEMIYQDPVTSID-----IEKQTLITNSGKLLKYGSLIVATGCTASRFP 178
           QTPE +K +  +E+  +  V +ID     +  + L+  S     Y +L+++ G  A   P
Sbjct: 62  QTPESFKARFNVEVRVKHEVVAIDRAAKLVTVRRLLDGSEYQESYDTLLLSPGA-APIVP 120
Query: 179 EKIGGYLPGVHYIRDVADADALISSLE--KAKKXXXXXXXYIGMEVAAAAVGWKLDTTRY 236
              G   P  H +R++ D D ++ +++    +        +IG+E   +     + TT  
Sbjct: 121 PIPGVDNPLTHSLRNIPDXDRILQTIQXNNVEHATVVGGGFIGLEXXESLHHLGIKTTLL 180
Query: 237 E------------------QLYQQNGVKFVKGASIKNLE-----------AGSDGRVAAV 267
           E                  Q  +  GV    G ++  +            AG D     +
Sbjct: 181 ELADQVXTPVDREXAGFAHQAIRDQGVDLRLGTALSEVSYQVQTHVASDAAGEDTAHQHI 240
Query: 268 K------LEDGSTIDADTIVIGIGAKPTVSPFERVGLN-SSVGGIQVDGQFRTRMPGIFA 320
           K      L +G  ++ D ++  IG +P        GL    +GGI+V+   +T  P I+A
Sbjct: 241 KGHLSLTLSNGELLETDLLIXAIGVRPETQLARDAGLAIGELGGIKVNAXXQTSDPAIYA 300
Query: 321 IGD 323
           +GD
Sbjct: 301 VGD 303

>pdb|3NT6|A Chain A, Structure Of The Shewanella Loihica Pv-4 Nadh-Dependent Persulfide Reductase C43sC531S DOUBLE MUTANT Length = 574

Iteration: 1
 Score = 48.1 bits (113), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 54/243 (22%), Positives = 97/243 (39%), Gaps = 45/243 (18%)
Query: 125 QTPEWYKEK-GIEMIYQDPVTSID-----IEKQTLITNSGKLLKYGSLIVATGCTASRFP 178
           QTPE +K +  +E+  +  V +ID     +  + L+  S     Y +L+++ G  A   P
Sbjct: 62  QTPESFKARFNVEVRVKHEVVAIDRAAKLVTVRRLLDGSEYQESYDTLLLSPGA-APIVP 120
Query: 179 EKIGGYLPGVHYIRDVADADALISSLE--KAKKXXXXXXXYIGMEVAAAAVGWKLDTTRY 236
              G   P  H +R++ D D ++ +++    +        +IG+E   +     + TT  
Sbjct: 121 PIPGVDNPLTHSLRNIPDXDRILQTIQXNNVEHATVVGGGFIGLEXXESLHHLGIKTTLL 180
Query: 237 E------------------QLYQQNGVKFVKGASIKNLE-----------AGSDGRVAAV 267
           E                  Q  +  GV    G ++  +            AG D     +
Sbjct: 181 ELADQVXTPVDREXAGFAHQAIRDQGVDLRLGTALSEVSYQVQTHVASDAAGEDTAHQHI 240
Query: 268 K------LEDGSTIDADTIVIGIGAKPTVSPFERVGLN-SSVGGIQVDGQFRTRMPGIFA 320
           K      L +G  ++ D ++  IG +P        GL    +GGI+V+   +T  P I+A
Sbjct: 241 KGHLSLTLSNGELLETDLLIXAIGVRPETQLARDAGLAIGELGGIKVNAXXQTSDPAIYA 300
Query: 321 IGD 323
           +GD
Sbjct: 301 VGD 303

>pdb|1ZY8|A Chain A, The Crystal Structure Of Dihydrolipoamide Dehydrogenase And Dihydrolipoamide Dehydrogenase-Binding Protein (Didomain) Subcomplex Of Human Pyruvate Dehydrogenase Complex. Length = 474

Iteration: 1
 Score = 47.8 bits (112), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 38/151 (25%), Positives = 70/151 (46%), Gaps = 21/151 (13%)
Query: 227 VGWKLDTTR-YEQLYQQNGVKFVKGASIKNLEAGSDGRVAAVKLEDGS-----TIDADTI 280
           VG  ++ ++ ++++ Q+ G KF     +      SDG++  V +E  S      I  D +
Sbjct: 216 VGIDMEISKNFQRILQKQGFKFKLNTKVTGATKKSDGKID-VSIEAASGGKAEVITCDVL 274
Query: 281 VIGIGAKPTVSPF--ERVGLN-SSVGGIQVDGQFRTRMPGIFAIGDVAAFPLKMYDRTAR 337
           ++ IG +P       E +G+     G I V+ +F+T++P I+AIGDV A P+  +     
Sbjct: 275 LVCIGRRPFTKNLGLEELGIELDPRGRIPVNTRFQTKIPNIYAIGDVVAGPMLAH----- 329
Query: 338 VEHVDHARQSAQHCIKALLSAQTHT-YDYLP 367
                 A      C++ +     H  Y+ +P
Sbjct: 330 -----KAEDEGIICVEGMAGGAVHIDYNCVP 355

>pdb|1ZMC|A Chain A, Crystal Structure Of Human Dihydrolipoamide Dehydrogenase Complexed To Nad+ Length = 474

Iteration: 1
 Score = 47.8 bits (112), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 38/151 (25%), Positives = 70/151 (46%), Gaps = 21/151 (13%)
Query: 227 VGWKLDTTR-YEQLYQQNGVKFVKGASIKNLEAGSDGRVAAVKLEDGS-----TIDADTI 280
           VG  ++ ++ ++++ Q+ G KF     +      SDG++  V +E  S      I  D +
Sbjct: 216 VGIDMEISKNFQRILQKQGFKFKLNTKVTGATKKSDGKID-VSIEAASGGKAEVITCDVL 274
Query: 281 VIGIGAKPTVSPF--ERVGLN-SSVGGIQVDGQFRTRMPGIFAIGDVAAFPLKMYDRTAR 337
           ++ IG +P       E +G+     G I V+ +F+T++P I+AIGDV A P+  +     
Sbjct: 275 LVCIGRRPFTKNLGLEELGIELDPRGRIPVNTRFQTKIPNIYAIGDVVAGPMLAH----- 329
Query: 338 VEHVDHARQSAQHCIKALLSAQTHT-YDYLP 367
                 A      C++ +     H  Y+ +P
Sbjct: 330 -----KAEDEGIICVEGMAGGAVHIDYNCVP 355

>pdb|3RNM|A Chain A, The Crystal Structure Of The Subunit Binding Of Human Dihydrolipoamide Transacylase (E2b) Bound To Human Dihydrolipoamide Dehydrogenase (E3) Length = 495

Iteration: 1
 Score = 47.8 bits (112), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 38/151 (25%), Positives = 70/151 (46%), Gaps = 21/151 (13%)
Query: 227 VGWKLDTTR-YEQLYQQNGVKFVKGASIKNLEAGSDGRVAAVKLEDGS-----TIDADTI 280
           VG  ++ ++ ++++ Q+ G KF     +      SDG++  V +E  S      I  D +
Sbjct: 237 VGIDMEISKNFQRILQKQGFKFKLNTKVTGATKKSDGKID-VSIEAASGGKAEVITCDVL 295
Query: 281 VIGIGAKPTVSPF--ERVGLN-SSVGGIQVDGQFRTRMPGIFAIGDVAAFPLKMYDRTAR 337
           ++ IG +P       E +G+     G I V+ +F+T++P I+AIGDV A P+  +     
Sbjct: 296 LVCIGRRPFTKNLGLEELGIELDPRGRIPVNTRFQTKIPNIYAIGDVVAGPMLAH----- 350
Query: 338 VEHVDHARQSAQHCIKALLSAQTHT-YDYLP 367
                 A      C++ +     H  Y+ +P
Sbjct: 351 -----KAEDEGIICVEGMAGGAVHIDYNCVP 376

>pdb|1F8W|A Chain A, Crystal Structure Of Nadh Peroxidase Mutant: R303m Length = 447

Iteration: 1
 Score = 46.2 bits (108), Expect = 4e-05,   Method: Compositional matrix adjust.
 Identities = 29/115 (25%), Positives = 50/115 (43%), Gaps = 3/115 (2%)
Query: 241 QQNGVKFVKGASIKNLEAGSDGRVAAVKLEDGSTIDADTIVIGIGAKPTVSPFERVGLNS 300
           + N +    G +++  E   DGRV  V + D +  DAD +V+ +G +P  +  +      
Sbjct: 202 EANNITIATGETVERYEG--DGRVQKV-VTDKNAYDADLVVVAVGVRPNTAWLKGTLELH 258
Query: 301 SVGGIQVDGQFRTRMPGIFAIGDVAAFPLKMYDRTARVEHVDHARQSAQHCIKAL 355
             G I+ D   RT  P +FA+GD         D    +    +A +  +  +K L
Sbjct: 259 PNGLIKTDEYMRTSEPDVFAVGDATLIKYNPADTEVNIALATNAMKQGRFAVKNL 313

>pdb|3AB1|A Chain A, Crystal Structure Of Ferredoxin Nadp+ Oxidoreductase Length = 360

Iteration: 1
 Score = 45.4 bits (106), Expect = 7e-05,   Method: Compositional matrix adjust.
 Identities = 27/76 (35%), Positives = 42/76 (55%), Gaps = 4/76 (5%)
Query: 260 SDGRVAAVKLE--DGS--TIDADTIVIGIGAKPTVSPFERVGLNSSVGGIQVDGQFRTRM 315
           S+G +  V L   DGS  T++AD ++I IG K  + P  R  L      + VD   +T +
Sbjct: 231 SNGVLTRVHLRSSDGSKWTVEADRLLILIGFKSNLGPLARWDLELYENALVVDSHMKTSV 290
Query: 316 PGIFAIGDVAAFPLKM 331
            G++A GD+A +P K+
Sbjct: 291 DGLYAAGDIAYYPGKL 306

>pdb|2BC1|A Chain A, Structural Analysis Of Streptococcus Pyogenes Nadh Oxidase: C44s Nox Length = 490

Iteration: 1
 Score = 45.4 bits (106), Expect = 8e-05,   Method: Compositional matrix adjust.
 Identities = 56/245 (22%), Positives = 104/245 (42%), Gaps = 43/245 (17%)
Query: 128 EWYKEKGIEMIYQDPVTSIDIEKQT---LITNSGKLLKYGSLIVATGCTASRFPEK---- 180
           E  +  G ++  + PV SID + +T   L+     +  Y  LI ATG      P K    
Sbjct: 100 EELESLGAKVYMESPVQSIDYDAKTVTALVDGKNHVETYDKLIFATGSQPILPPIKGAEI 159
Query: 181 ------IGGYLPGVHYIRDVADADALISSLEKA--KKXXXXXXXYIGMEVAAA------- 225
                     L  + +++   ++  +I+ LE    K+       YIG+E+A A       
Sbjct: 160 KEGSLEFEATLENLQFVKLYQNSADVIAKLENKDIKRVAVVGAGYIGVELAEAFQRKGKE 219
Query: 226 -----------AVGWKLDTTR-YEQLYQQNGVKFVKGASIKNLEAGSDGRVAAVKLEDGS 273
                      A  +  D T    +  +++G++   G ++K  E   +G+V  + + D +
Sbjct: 220 VVLIDVVDTCLAGYYDRDLTDLMAKNMEEHGIQLAFGETVK--EVAGNGKVEKI-ITDKN 276
Query: 274 TIDADTIVIGIGAKPTVSPFE-RVGLNSSVGGIQVDGQFRTRMPGIFAIGDVAAFPLKMY 332
             D D +++ +G +P  +    ++ L  + G   V+ +  T +PG++AIGD A     +Y
Sbjct: 277 EYDVDMVILAVGFRPNTTLGNGKIDLFRN-GAFLVNKRQETSIPGVYAIGDCAT----IY 331
Query: 333 DRTAR 337
           D   R
Sbjct: 332 DNATR 336

>pdb|2BC0|A Chain A, Structural Analysis Of Streptococcus Pyogenes Nadh Oxidase: Wild-Type Nox Length = 490

Iteration: 1
 Score = 45.1 bits (105), Expect = 8e-05,   Method: Compositional matrix adjust.
 Identities = 56/245 (22%), Positives = 104/245 (42%), Gaps = 43/245 (17%)
Query: 128 EWYKEKGIEMIYQDPVTSIDIEKQT---LITNSGKLLKYGSLIVATGCTASRFPEK---- 180
           E  +  G ++  + PV SID + +T   L+     +  Y  LI ATG      P K    
Sbjct: 100 EELESLGAKVYMESPVQSIDYDAKTVTALVDGKNHVETYDKLIFATGSQPILPPIKGAEI 159
Query: 181 ------IGGYLPGVHYIRDVADADALISSLEKA--KKXXXXXXXYIGMEVAAA------- 225
                     L  + +++   ++  +I+ LE    K+       YIG+E+A A       
Sbjct: 160 KEGSLEFEATLENLQFVKLYQNSADVIAKLENKDIKRVAVVGAGYIGVELAEAFQRKGKE 219
Query: 226 -----------AVGWKLDTTR-YEQLYQQNGVKFVKGASIKNLEAGSDGRVAAVKLEDGS 273
                      A  +  D T    +  +++G++   G ++K  E   +G+V  + + D +
Sbjct: 220 VVLIDVVDTCLAGYYDRDLTDLMAKNMEEHGIQLAFGETVK--EVAGNGKVEKI-ITDKN 276
Query: 274 TIDADTIVIGIGAKPTVSPFE-RVGLNSSVGGIQVDGQFRTRMPGIFAIGDVAAFPLKMY 332
             D D +++ +G +P  +    ++ L  + G   V+ +  T +PG++AIGD A     +Y
Sbjct: 277 EYDVDMVILAVGFRPNTTLGNGKIDLFRN-GAFLVNKRQETSIPGVYAIGDCAT----IY 331
Query: 333 DRTAR 337
           D   R
Sbjct: 332 DNATR 336

>pdb|4DNA|A Chain A, Crystal Structure Of Putative Glutathione Reductase From Sinorhizobium Meliloti 1021 Length = 463

Iteration: 1
 Score = 44.7 bits (104), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 27/87 (31%), Positives = 48/87 (55%), Gaps = 4/87 (4%)
Query: 241 QQNGVKFVKGASIKNLEAGSDGRVAAVKLEDGSTIDADTIVIGIGAKPTVSPF--ERVGL 298
           ++ G++ +    I+++ A +DGR  A   + G  + AD + + +G  P  +    E  G+
Sbjct: 222 EEKGIRILCEDIIQSVSADADGRRVATTXKHGEIV-ADQVXLALGRXPNTNGLGLEAAGV 280
Query: 299 NSS-VGGIQVDGQFRTRMPGIFAIGDV 324
            ++ +G I VD   RT  PGI+A+GDV
Sbjct: 281 RTNELGAIIVDAFSRTSTPGIYALGDV 307

>pdb|3ICR|A Chain A, Crystal Structure Of Oxidized Bacillus Anthracis Coadr-Rhd Length = 588

Iteration: 1
 Score = 44.7 bits (104), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 25/60 (41%), Positives = 37/60 (61%), Gaps = 1/60 (1%)
Query: 265 AAVKLEDGSTIDADTIVIGIGAKPTVSPFERVGLNSSV-GGIQVDGQFRTRMPGIFAIGD 323
           A V+L+ GS I  D +++ IG +P  S  +  GL   V G I+V+ +F+T  P I+AIGD
Sbjct: 259 AVVRLKSGSVIQTDXLILAIGVQPESSLAKGAGLALGVRGTIKVNEKFQTSDPHIYAIGD 318

>pdb|1DXL|A Chain A, Dihydrolipoamide Dehydrogenase Of Glycine Decarboxylase From Pisum Sativum Length = 470

Iteration: 1
 Score = 43.1 bits (100), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 33/140 (23%), Positives = 66/140 (47%), Gaps = 17/140 (12%)
Query: 235 RYEQLYQQNGVKFVKGASIKNLEAGSDGRVAAVKLEDG---STIDADTIVIGIGAKPTVS 291
           ++++  ++ G+KF     +  ++   DG    V+   G   + I+AD +++  G  P  S
Sbjct: 223 QFQRSLEKQGMKFKLKTKVVGVDTSGDGVKLTVEPSAGGEQTIIEADVVLVSAGRTPFTS 282
Query: 292 --PFERVGLNSS-VGGIQVDGQFRTRMPGIFAIGDVAAFPLKMYDRTARVEHVDHARQSA 348
               +++G+ +  +G I V+ +F T + G++AIGDV   P+  +           A +  
Sbjct: 283 GLNLDKIGVETDKLGRILVNERFSTNVSGVYAIGDVIPGPMLAH----------KAEEDG 332
Query: 349 QHCIKALLSAQTHT-YDYLP 367
             C++ L     H  YD +P
Sbjct: 333 VACVEYLAGKVGHVDYDKVP 352

>pdb|2HQM|A Chain A, Crystal Structure Of Glutathione Reductase Glr1 From The Yeast Saccharomyces Cerevisiae Length = 479

Iteration: 1
 Score = 43.1 bits (100), Expect = 4e-04,   Method: Compositional matrix adjust.
 Identities = 51/202 (25%), Positives = 86/202 (42%), Gaps = 32/202 (15%)
Query: 145 SIDIEKQTLITNSGKLLKYGSLIVATGCTASRFPEKIGGYLPGVHYIRDVADADALISSL 204
           +++++K+    N+ ++     ++VATG  A  FPE I G+  G        D+D      
Sbjct: 134 NVEVQKRD---NTTEVYSANHILVATGGKAI-FPENIPGFELG-------TDSDGFFRLE 182
Query: 205 EKAKKXXXXXXXYIGMEVAAAAVGWKLDT---TRYEQL---------------YQQNGVK 246
           E+ KK       YIG+E+A    G   +T    R E +               Y + G+ 
Sbjct: 183 EQPKKVVVVGAGYIGIELAGVFHGLGSETHLVIRGETVLRKFDECIQNTITDHYVKEGIN 242
Query: 247 FVKGASIKNLEAGSDGRVAAVKLEDGSTI-DADTIVIGIGAKPTVSP-FERVGLN-SSVG 303
             K + I  +E   +     + + D  +I D D ++  IG K  +    E VG+  +S  
Sbjct: 243 VHKLSKIVKVEKNVETDKLKIHMNDSKSIDDVDELIWTIGRKSHLGMGSENVGIKLNSHD 302
Query: 304 GIQVDGQFRTRMPGIFAIGDVA 325
            I  D    T +P I+++GDV 
Sbjct: 303 QIIADEYQNTNVPNIYSLGDVV 324

>pdb|3URH|A Chain A, Crystal Structure Of A Dihydrolipoamide Dehydrogenase From Sinorhizobium Meliloti 1021 Length = 491

Iteration: 1
 Score = 42.0 bits (97), Expect = 7e-04,   Method: Compositional matrix adjust.
 Identities = 28/100 (28%), Positives = 50/100 (50%), Gaps = 6/100 (6%)
Query: 235 RYEQLYQQNGVKFVKGASIKNLEAGSDGRVAA---VKLEDGSTIDADTIVIGIGAKPTVS 291
           + ++   + G+ F  GA +       DG       VK  + +T+DA+ ++I  G KP+  
Sbjct: 244 QLQRXLTKQGIDFKLGAKVTGAVKSGDGAKVTFEPVKGGEATTLDAEVVLIATGRKPSTD 303
Query: 292 PF--ERVGLN-SSVGGIQVDGQFRTRMPGIFAIGDVAAFP 328
                + G+   S G +++D  F+T + G++AIGDV   P
Sbjct: 304 GLGLAKAGVVLDSRGRVEIDRHFQTSIAGVYAIGDVVRGP 343

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	469
1m6i_A	493	Programmed cell death protein 8; apoptosis, AIF, o	7e-96
1q1r_A	431	Putidaredoxin reductase; glutathione reductase fol	5e-95
3fg2_P	404	Putative rubredoxin reductase; ferredoxin reductas	2e-93
3lxd_A	415	FAD-dependent pyridine nucleotide-disulphide oxido	1e-91
3ef6_A	410	Toluene 1,2-dioxygenase system ferredoxin--NAD(+)	1e-91
2gqw_A	408	Ferredoxin reductase; flavoprotein, oxidoreductase	3e-91
2v3a_A	384	Rubredoxin reductase; alkane degradation, NADH oxi	4e-59
3klj_A	385	NAD(FAD)-dependent dehydrogenase, NIRB-family (N-	5e-55
1xhc_A	367	NADH oxidase /nitrite reductase; southe collaborat	3e-48
2cdu_A	452	NADPH oxidase; flavoenzyme, oxidoreductase; HET: F	1e-40
3oc4_A	452	Oxidoreductase, pyridine nucleotide-disulfide FAM;	3e-40
1nhp_A	447	NADH peroxidase; oxidoreductase (H2O2(A)); HET: FA	2e-38
3ics_A	588	Coenzyme A-disulfide reductase; pyridine nucleotid	2e-38
3cgb_A	480	Pyridine nucleotide-disulfide oxidoreductase, CLA;	4e-38
3kd9_A	449	Coenzyme A disulfide reductase; PSI-II, NYSGXRC, o	4e-38
3iwa_A	472	FAD-dependent pyridine nucleotide-disulphide oxido	5e-38
2bc0_A	490	NADH oxidase; flavoprotein, pyridine nucleotide di	1e-37
1yqz_A	438	Coenzyme A disulfide reductase; oxidoreductase; HE	2e-36
3ntd_A	565	FAD-dependent pyridine nucleotide-disulphide oxido	3e-35
3o0h_A	484	Glutathione reductase; ssgcid, structur genomics,	2e-22
1onf_A	500	GR, grase, glutathione reductase; oxidoreductase;	2e-22
1ges_A	450	Glutathione reductase; oxidoreductase(flavoenzyme)	2e-22
2wpf_A	495	Trypanothione reductase; oxidoreductase, trypanoso	1e-21
4dna_A	463	Probable glutathione reductase; structural genomic	2e-21
1fec_A	490	Trypanothione reductase; redox-active center, oxid	3e-21
1xdi_A	499	RV3303C-LPDA; reductase, FAD, NAD, NADP, unkno fun	1e-20
2hqm_A	479	GR, grase, glutathione reductase; glutathione redu	2e-20
3l8k_A	466	Dihydrolipoyl dehydrogenase; redox-active center,	5e-20
2r9z_A	463	Glutathione amide reductase; NAD, FAD, substrate s	8e-20
3h8l_A	409	NADH oxidase; membrane protein, complete form, ros	1e-19
4fk1_A	304	Putative thioredoxin reductase; structural genomic	3e-19
3h28_A	430	Sulfide-quinone reductase; monotopic membrane prot	3e-19
3h28_A	430	Sulfide-quinone reductase; monotopic membrane prot	2e-05
1mo9_A	523	ORF3; nucleotide binding motifs, nucleotide bindin	3e-19
3dgz_A	488	Thioredoxin reductase 2; oxidoreductase, rossmann,	1e-18
3dgh_A	483	TRXR-1, thioredoxin reductase 1, mitochondrial; ox	1e-18
2zbw_A	335	Thioredoxin reductase; redox protein, oxidoreducta	2e-18
3dk9_A	478	Grase, GR, glutathione reductase; flavoenzyme, nic	2e-18
3sx6_A	437	Sulfide-quinone reductase, putative; sulfide:quino	4e-18
3sx6_A	437	Sulfide-quinone reductase, putative; sulfide:quino	3e-04
2yqu_A	455	2-oxoglutarate dehydrogenase E3 component; lipoami	6e-18
3ab1_A	360	Ferredoxin--NADP reductase; oxidoreductase, electr	9e-18
1lvl_A	458	Dihydrolipoamide dehydrogenase; oxidoreductase; HE	4e-17
2a8x_A	464	Dihydrolipoyl dehydrogenase, E3 component of alpha	4e-17
3qfa_A	519	Thioredoxin reductase 1, cytoplasmic; protein-prot	5e-17
3lzw_A	332	Ferredoxin--NADP reductase 2; ferredoxin reductase	2e-16
1ojt_A	482	Surface protein; redox-active center, glycolysis,	5e-16
2eq6_A	464	Pyruvate dehydrogenase complex, dihydrolipoamide d	6e-16
1ebd_A	455	E3BD, dihydrolipoamide dehydrogenase; redox-active	7e-16
1zk7_A	467	HGII, reductase, mercuric reductase; mercuric ION	1e-15
1dxl_A	470	Dihydrolipoamide dehydrogenase; oxidoreductase, mu	2e-15
3urh_A	491	Dihydrolipoyl dehydrogenase; PSI-biology, structur	3e-15
2x8g_A	598	Thioredoxin glutathione reductase; redox-active ce	5e-15
1v59_A	478	Dihydrolipoamide dehydrogenase; 2-oxoacid dehydrog	9e-15
1hyu_A	521	AHPF, alkyl hydroperoxide reductase subunit F; thi	1e-14
3cty_A	319	Thioredoxin reductase; FAD, oxidoreductase, flavin	1e-14
2qae_A	468	Lipoamide, dihydrolipoyl dehydrogenase; FAD-cystin	1e-14
3lad_A	476	Dihydrolipoamide dehydrogenase; oxidoreductase; HE	2e-14
1zmd_A	474	Dihydrolipoyl dehydrogenase; lipoamide dehydrogena	3e-14
1fl2_A	310	Alkyl hydroperoxide reductase subunit F; reactive	6e-14
3fbs_A	297	Oxidoreductase; structural genomics, PSI2, MCSG, p	1e-13
3ic9_A	492	Dihydrolipoamide dehydrogenase; APC62701, colwelli	4e-13
1gte_A	1025	Dihydropyrimidine dehydrogenase; electron transfer	1e-12
3f8d_A	323	Thioredoxin reductase (TRXB-3); redox protein, nuc	4e-12
2q0l_A	311	TRXR, thioredoxin reductase; bacterial thiredoxin	4e-11
3r9u_A	315	Thioredoxin reductase; structural genomics, center	3e-09
1fcd_A	401	Flavocytochrome C sulfide dehydrogenase (flavin- b	3e-09
2q7v_A	325	Thioredoxin reductase; rossman fold, FAD, flavopro	2e-08
3k30_A	690	Histamine dehydrogenase; 6-S-cysteinyl-FMN, ADP bi	5e-08
2vdc_G	456	Glutamate synthase [NADPH] small chain; oxidoreduc	3e-07
2a87_A	335	TRXR, TR, thioredoxin reductase; FAD, NAP, NMA, TL	1e-06
4a9w_A	357	Monooxygenase; baeyer-villiger, FAD, oxidoreductas	3e-06
1vt4_I	1221	APAF-1 related killer DARK; drosophila apoptosome,	8e-06
1o94_A	729	Tmadh, trimethylamine dehydrogenase; electron tran	2e-05
1lqt_A	456	FPRA; NADP+ derivative, oxidoreductase, structural	3e-05
1ps9_A	671	2,4-dienoyl-COA reductase; iron-sulfur, TIM barrel	2e-04
1vdc_A	333	NTR, NADPH dependent thioredoxin reductase; hypoth	6e-04
1trb_A	320	Thioredoxin reductase; oxidoreductase(flavoenzyme)	7e-04
3itj_A	338	Thioredoxin reductase 1; disulfide B flavoprotein,	8e-04

>1m6i_A Programmed cell death protein 8; apoptosis, AIF, oxidoreductase; HET: FAD; 1.80A {Homo sapiens} SCOP: c.3.1.5 c.3.1.5 d.87.1.1 PDB: 3gd3_A* 3gd4_A* 1gv4_A* Length = 493

 Score =  297 bits (761), Expect = 7e-96
 Identities = 99/436 (22%), Positives = 168/436 (38%), Gaps = 60/436 (13%)

Query: 50  ENREFVIVGGGNAAGYAARTFVEHGMADGRLCIVSKEAYAPYERPALTKGYLFPLDKKPA 109
            +  F+++GGG AA  AAR+         R+ IVS++   PY RP L+K         P 
Sbjct: 10  SHVPFLLIGGGTAAFAAARSIRARD-PGARVLIVSEDPELPYMRPPLSKELW--FSDDPN 66

Query: 110 RLPGFHTCVGSGGER----QTPEWY---------KEKGIEMIYQDPVTSIDIEKQTLITN 156
                     +G ER    Q P +Y         +  G+ ++    V  +D+    +  N
Sbjct: 67  VTKTLRFKQWNGKERSIYFQPPSFYVSAQDLPHIENGGVAVLTGKKVVQLDVRDNMVKLN 126

Query: 157 SGKLLKYGSLIVATGCTASRFP--EKIGGYLPG-VHYIRDVADADALISSLEKAKKVVVV 213
            G  + Y   ++ATG T       ++ G  +       R + D  +L     + K + ++
Sbjct: 127 DGSQITYEKCLIATGGTPRSLSAIDRAGAEVKSRTTLFRKIGDFRSLEKISREVKSITII 186

Query: 214 GGGYIGMEVAAA----AVGWKLDTT-------------------RYEQLYQQNGVKFVKG 250
           GGG++G E+A A    A     +                        +  ++ GVK +  
Sbjct: 187 GGGFLGSELACALGRKARALGTEVIQLFPEKGNMGKILPEYLSNWTMEKVRREGVKVMPN 246

Query: 251 ASIKNLEAGSDGRVAAVKLEDGSTIDADTIVIGIGAKPTVSPFERVGL--NSSVGGIQVD 308
           A ++++          +KL+DG  ++ D IV  +G +P V   +  GL  +S  GG +V+
Sbjct: 247 AIVQSVGV--SSGKLLIKLKDGRKVETDHIVAAVGLEPNVELAKTGGLEIDSDFGGFRVN 304

Query: 309 GQFRTRMPGIFAIGDVAAFPLKMYDRTARVEHVDHARQSAQHCIKALLSAQTHTYDYLPY 368
            + + R   I+  GD A F      R  RVEH DHA  S +   + +  A    Y +   
Sbjct: 305 AELQAR-SNIWVAGDAACFYDIKLGRR-RVEHHDHAVVSGRLAGENMTGAAKP-YWHQSM 361

Query: 369 FYSRVFEYEGSPRKVWWQFFGDNVGETIEIGNFDPKIA-----TFWIDSGKLKGVLVESG 423
           F+S +   +     V ++  G        +G F    A     +    SG       E+ 
Sbjct: 362 FWSDLG-PD-----VGYEAIGLVDSSLPTVGVFAKATAQDNPKSATEQSGTGIRSESETE 415

Query: 424 SPEEFQLLPTLARSQP 439
           S      +P    + P
Sbjct: 416 SEASEITIPPSTPAVP 431

>1q1r_A Putidaredoxin reductase; glutathione reductase fold, oxidoreductase; HET: FAD; 1.91A {Pseudomonas putida} SCOP: c.3.1.5 c.3.1.5 d.87.1.1 PDB: 1q1w_A* 3lb8_A* Length = 431

 Score =  292 bits (750), Expect = 5e-95
 Identities = 120/446 (26%), Positives = 189/446 (42%), Gaps = 49/446 (10%)

Query: 49  NENREFVIVGGGNAAGYAARTFVEHGMADGRLCIVSKEAYAPYERPALTKGYLFPLDKKP 108
           N N   VIVG G A    A      G  +G + +V      P+  P L+K YL    K  
Sbjct: 2   NANDNVVIVGTGLAGVEVAFGLRASG-WEGNIRLVGDATVIPHHLPPLSKAYL--AGKAT 58

Query: 109 ARLPGFHTCVGSGGERQTPEWYKEKGIEMIYQDPVTSIDIEKQTLITNSGKLLKYGSLIV 168
           A      T          P+ Y  + I+++    VT+I+ ++Q +I + G+ L Y  L++
Sbjct: 59  AESLYLRT----------PDAYAAQNIQLLGGTQVTAINRDRQQVILSDGRALDYDRLVL 108

Query: 169 ATGCTASRFPEKIG--GYLPGVHYIRDVADADALISSLEKAKKVVVVGGGYIGMEVAAAA 226
           ATG      P   G  G      Y+R + DA+ +   L    ++VV+GGGYIG+EVAA A
Sbjct: 109 ATGGRPRPLPVASGAVGKANNFRYLRTLEDAECIRRQLIADNRLVVIGGGYIGLEVAATA 168

Query: 227 VGWKLDTT-------------------RYEQLYQQNGVKFVKGASIKNLE-AGSDGRVAA 266
           +   +  T                    YE L+++ GV    G  +   E +    +V A
Sbjct: 169 IKANMHVTLLDTAARVLERVTAPPVSAFYEHLHREAGVDIRTGTQVCGFEMSTDQQKVTA 228

Query: 267 VKLEDGSTIDADTIVIGIGAKPTVSPFERVGLNSSVGGIQVDGQFRTRMPGIFAIGDVAA 326
           V  EDG+ + AD ++ GIG  P        GL     GI ++   +T  P I A+GD A 
Sbjct: 229 VLCEDGTRLPADLVIAGIGLIPNCELASAAGLQVD-NGIVINEHMQTSDPLIMAVGDCAR 287

Query: 327 FPLKMYDRTARVEHVDHARQSAQHCIKALLSAQTHTYDYLPYFYSRVFEYEGSPRKVWWQ 386
           F  ++YDR  R+E V +A + A+     L        +  P+F+S  +E       +  +
Sbjct: 288 FHSQLYDRWVRIESVPNALEQARKIAAILCGKVP-RDEAAPWFWSDQYE-----IGL--K 339

Query: 387 FFGDNVG--ETIEIGNFD-PKIATFWIDSGKLKGVLVESGSPEEFQLLPTLARSQPFVDK 443
             G + G    I  G+   P  + F++   ++  V      P EF     +   +  V+ 
Sbjct: 340 MVGLSEGYDRIIVRGSLAQPDFSVFYLQGDRVLAV-DTVNRPVEFNQSKQIITDRLPVEP 398

Query: 444 AKLQQAS-SVEEALEIARAALPVEAA 468
             L   S  ++E +  A+A L    A
Sbjct: 399 NLLGDESVPLKEIIAAAKAELSSAPA 424

>3fg2_P Putative rubredoxin reductase; ferredoxin reductase, RPA3782, F flavoprotein, oxidoreductase; HET: FAD; 2.20A {Rhodopseudomonas palustris} Length = 404

 Score =  287 bits (737), Expect = 2e-93
 Identities = 109/418 (26%), Positives = 172/418 (41%), Gaps = 48/418 (11%)

Query: 51  NREFVIVGGGNAAGYAARTFVEHGMADGRLCIVSKEAYAPYERPALTKGYLFPLDKKPAR 110
           N   +I G G+A    A +  +     GR+ +++ E + PY+RP L+K YL         
Sbjct: 1   NDTVLIAGAGHAGFQVAVSLRQAK-YPGRIALINDEKHLPYQRPPLSKAYL--KSGGDPN 57

Query: 111 LPGFHTCVGSGGERQTPEWYKEKGIEMIYQDPVTSIDIEKQTLITNSGKLLKYGSLIVAT 170
              F             ++++++ IE+I  D + SID E + L+  SG  ++YG L++AT
Sbjct: 58  SLMFRP----------EKFFQDQAIELI-SDRMVSIDREGRKLLLASGTAIEYGHLVLAT 106

Query: 171 GCTASRFPEKIGGYLPGVHYIRDVADADALISSLEKAKKVVVVGGGYIGMEVAAAAVGWK 230
           G             LP V Y+R + +++ L   +   K VVV+G G+IG+E AA A    
Sbjct: 107 GARNRMLDVP-NASLPDVLYLRTLDESEVLRQRMPDKKHVVVIGAGFIGLEFAATARAKG 165

Query: 231 LDTT-------------------RYEQLYQQNGVKFVKGASIKNLEAGSDGRVAAVKLED 271
           L+                      +   +   G++   G     +      RV  V L D
Sbjct: 166 LEVDVVELAPRVMARVVTPEISSYFHDRHSGAGIRMHYGVRATEIA-AEGDRVTGVVLSD 224

Query: 272 GSTIDADTIVIGIGAKPTVSPFERVGLNSSVGGIQVDGQFRTRMPGIFAIGDVAAFPLKM 331
           G+T+  D +V+G+G  P V      GL ++  GI VD Q  T  P I AIGD A F    
Sbjct: 225 GNTLPCDLVVVGVGVIPNVEIAAAAGLPTA-AGIIVDQQLLTSDPHISAIGDCALFESVR 283

Query: 332 YDRTARVEHVDHARQSAQHCIKALLSAQTHTYDYLPYFYSRVFEYEGSPRKVWWQFFGDN 391
           +  T RVE V +A   A+     L       YD  P+F+S   +      K+  Q  G  
Sbjct: 284 FGETMRVESVQNATDQARCVAARLT-GDAKPYDGYPWFWSDQGD-----DKL--QIVGLT 335

Query: 392 VG--ETIEIGNFD-PKIATFWIDSGKLKGVLVESGSPEEFQLLPTLARSQPFVDKAKL 446
            G  + +  G+      + F   +GKL G+        +      +      V   + 
Sbjct: 336 AGFDQVVIRGSVAERSFSAFCYKAGKLIGI-ESVNRAADHVFGRKILPLDKSVTPEQA 392

>3lxd_A FAD-dependent pyridine nucleotide-disulphide oxidoreductase; glutathione reductase (GR)-like ONFR; HET: FAD; 2.50A {Novosphingobium aromaticivorans} Length = 415

 Score =  283 bits (727), Expect = 1e-91
 Identities = 117/426 (27%), Positives = 190/426 (44%), Gaps = 49/426 (11%)

Query: 45  SSFANENREFVIVGGGNAAGYAARTFVEHGMADGRLCIVSKEAYAPYERPALTKGYLFPL 104
           S    E  + VIVG G+    AA    ++G  +GR+ ++ +E   PYERP L+K YL   
Sbjct: 3   SEVQAERADVVIVGAGHGGAQAAIALRQNG-FEGRVLVIGREPEIPYERPPLSKEYL--A 59

Query: 105 DKKPARLPGFHTCVGSGGERQTPEWYKEKGIEMIYQDPVTSIDIEKQTLITNSGKLLKYG 164
            +K                    +++++K +EM     V S+D    T+    G  ++YG
Sbjct: 60  REKTFERICIRP----------AQFWEDKAVEMKLGAEVVSLDPAAHTVKLGDGSAIEYG 109

Query: 165 SLIVATGCTASRFPEKIGGYLPGVHYIRDVADADALISSLEK-AKKVVVVGGGYIGMEVA 223
            LI ATG    R    +G  L GVH +R   DAD L++ L+  AK  VV+GGGYIG+E A
Sbjct: 110 KLIWATGGDPRRLSC-VGADLAGVHAVRTKEDADRLMAELDAGAKNAVVIGGGYIGLEAA 168

Query: 224 AAAVGWKLDTT-------------------RYEQLYQQNGVKFVKGASIKNLEAGSDGRV 264
           A    + ++ T                    Y+  ++ +GV    GA++  +E G   +V
Sbjct: 169 AVLTKFGVNVTLLEALPRVLARVAGEALSEFYQAEHRAHGVDLRTGAAMDCIE-GDGTKV 227

Query: 265 AAVKLEDGSTIDADTIVIGIGAKPTVSPFERVGLNSSVGGIQVDGQFRTRMPGIFAIGDV 324
             V+++DGS I AD +++GIG  P V      G +    G+ VD   RT +  ++AIGD 
Sbjct: 228 TGVRMQDGSVIPADIVIVGIGIVPCVGALISAGASGG-NGVDVDEFCRTSLTDVYAIGDC 286

Query: 325 AAFPLKMYD-RTARVEHVDHARQSAQHCIKALLSAQTHTYDYLPYFYSRVFEYEGSPRKV 383
           AA      D    R+E V +A   A    K +  A    Y   P+F+S  ++      K+
Sbjct: 287 AAHANDFADGAVIRLESVQNANDMATAAAKDICGAPV-PYKATPWFWSNQYD-----LKL 340

Query: 384 WWQFFGDNVG--ETIEIGNFD-PKIATFWIDSGKLKGVLVESGSPEEFQLLPTLARSQPF 440
             Q  G + G    +  G+      +  ++  GK+  +       +++     L  ++  
Sbjct: 341 --QTVGLSTGHDNAVLRGDPATRSFSVVYLKGGKVVAL-DCVNMVKDYVQGKKLVEARAQ 397

Query: 441 VDKAKL 446
           +   +L
Sbjct: 398 IAPEQL 403

>3ef6_A Toluene 1,2-dioxygenase system ferredoxin--NAD(+) reductase; FAD binding protein, NADH binding protein, aromatic hydrocar catabolism, FAD; HET: FAD; 1.80A {Pseudomonas putida} Length = 410

 Score =  283 bits (726), Expect = 1e-91
 Identities = 105/415 (25%), Positives = 177/415 (42%), Gaps = 50/415 (12%)

Query: 54  FVIVGGGNAAGYAARTFVEHGMADGRLCIVSKEAYAPYERPALTKGYLFPLDKKPARLPG 113
             I+G G      A+     G  +GR+ ++  E + PY+RP+L+K  L    ++P  L  
Sbjct: 5   VAIIGNGVGGFTTAQALRAEG-FEGRISLIGDEPHLPYDRPSLSKAVLDGSLERPPIL-- 61

Query: 114 FHTCVGSGGERQTPEWYKEKGIEMIYQDPVTSIDIEKQTLITNSGKLLKYGSLIVATGCT 173
                         +WY E  I+M+    VT++D++ +T+  + G  L   ++++ATG  
Sbjct: 62  -----------AEADWYGEARIDMLTGPEVTALDVQTRTISLDDGTTLSADAIVIATGSR 110

Query: 174 ASRFPEKIGGYLPGVHYIRDVADADALISSLEKAKKVVVVGGGYIGMEVAAAAVGWKLDT 233
           A       G  LPGV  +R   D   L  S   A ++++VGGG IG EVA  A    L  
Sbjct: 111 ARTMALP-GSQLPGVVTLRTYGDVQVLRDSWTSATRLLIVGGGLIGCEVATTARKLGLSV 169

Query: 234 T-------------------RYEQLYQQNGVKFVKGASIKNLEAGSDGRVAAVKLEDGST 274
           T                       L  + GV+   G  +       +G++  V   DG +
Sbjct: 170 TILEAGDELLVRVLGRRIGAWLRGLLTELGVQVELGTGVVGFSG--EGQLEQVMASDGRS 227

Query: 275 IDADTIVIGIGAKPTVSPFERVGLNSSVGGIQVDGQFRTRMPGIFAIGDVAAFPLKMYDR 334
             AD+ +I +GA+P      + GL     G+ VD    T   G+FA+GDVA++PL+   R
Sbjct: 228 FVADSALICVGAEPADQLARQAGLACD-RGVIVDHCGATLAKGVFAVGDVASWPLRAGGR 286

Query: 335 TARVEHVDHARQSAQHCIKALLSAQTHTYDYLPYFYSRVFEYEGSPRKVWWQFFGDNVG- 393
              +E   +A++ A     A+L         LP  ++ +        ++  Q  GD  G 
Sbjct: 287 R-SLETYMNAQRQAAAVAAAILGKNVS-APQLPVSWTEIAG-----HRM--QMAGDIEGP 337

Query: 394 -ETIEIGNFD-PKIATFWIDSGKLKGVLVESGSPEEFQLLPTLARSQPFVDKAKL 446
            + +  G         F +   +++ V V   +P +F L   L  ++  ++ A+L
Sbjct: 338 GDFVSRGMPGSGAALLFRLQERRIQAV-VAVDAPRDFALATRLVEARAAIEPARL 391

>2gqw_A Ferredoxin reductase; flavoprotein, oxidoreductase; HET: FAD; 1.40A {Pseudomonas SP} PDB: 1f3p_A* 1d7y_A* 2gr0_A* 2gr1_A* 2gr2_A* 2yvf_A* 2yvg_A* 2yvj_A* 2gr3_A* Length = 408

 Score =  282 bits (724), Expect = 3e-91
 Identities = 98/435 (22%), Positives = 165/435 (37%), Gaps = 57/435 (13%)

Query: 51  NREFVIVGGGNAAGYAARTFVEHGMADGRLCIVSKEAYAPYERPALTKGYLFPLDKKPAR 110
               V++G G A+        + G   G + +V  EA  PY+RP L+K ++         
Sbjct: 7   KAPVVVLGAGLASVSFVAELRQAG-YQGLITVVGDEAERPYDRPPLSKDFM--------- 56

Query: 111 LPGFHTCVGSGGERQTPEWYKEKGIEMIYQDPVTSIDIEKQTLITNSGKLLKYGSLIVAT 170
                       E+   +  +   +E +      S D +  T+  + G+ L YG+L++AT
Sbjct: 57  -------AHGDAEKIRLDCKRAPEVEWLLGVTAQSFDPQAHTVALSDGRTLPYGTLVLAT 109

Query: 171 GCTASRFPEKIGGYLPGVHYIRDVADADALISSLEKAKKVVVVGGGYIGMEVAAAAVGWK 230
           G      P  + G    VH +R + DA  + + L    ++++VGGG IG+E+AA A    
Sbjct: 110 GAAPRALPT-LQGATMPVHTLRTLEDARRIQAGLRPQSRLLIVGGGVIGLELAATARTAG 168

Query: 231 LDTT-------------------RYEQLYQQNGVKFVKGASIKNLEAGSDGRVAAVKLED 271
           +  +                      + +   GV      S+      +      V L+D
Sbjct: 169 VHVSLVETQPRLMSRAAPATLADFVARYHAAQGVDLRFERSV------TGSVDGVVLLDD 222

Query: 272 GSTIDADTIVIGIGAKPTVSPFERVGLNSSVGGIQVDGQFRTRMPGIFAIGDVAAFPLKM 331
           G+ I AD +V+GIG     +     GL     GI VD   RT  P ++A+GDV      +
Sbjct: 223 GTRIAADMVVVGIGVLANDALARAAGLACD-DGIFVDAYGRTTCPDVYALGDVTRQRNPL 281

Query: 332 YDRTARVEHVDHARQSAQHCIKALLSAQTHTYDYLPYFYSRVFEYEGSPRKVWWQFFGDN 391
             R  R+E   +A+       + L+      Y  LP+++S          ++  Q  G  
Sbjct: 282 SGRFERIETWSNAQNQGIAVARHLVDPTAPGYAELPWYWSDQGA-----LRI--QVAGLA 334

Query: 392 VG-ETIEIGNFDP---KIATFWIDSGKLKGVLVESGSPEEFQLLPTLARSQPFVDKAKLQ 447
            G E I  G       K     +  G++ G      +  +F  L  L       D+A L 
Sbjct: 335 SGDEEIVRGEVSLDAPKFTLIELQKGRIVGA-TCVNNARDFAPLRRLLAVGAKPDRAALA 393

Query: 448 QAS-SVEEALEIARA 461
             +  + +      A
Sbjct: 394 DPATDLRKLAAAVAA 408

>2v3a_A Rubredoxin reductase; alkane degradation, NADH oxidoreductase, rubredoxin reductas NAD, flavoprotein, oxidoreductase; HET: FAD; 2.4A {Pseudomonas aeruginosa} PDB: 2v3b_A* Length = 384

 Score =  198 bits (505), Expect = 4e-59
 Identities = 71/340 (20%), Positives = 120/340 (35%), Gaps = 48/340 (14%)

Query: 49  NENREFVIVGGGNAAGYAARTFVEHGMADGRLCIVSKEAYAPYERPALTKGYLFPLDKKP 108
           +E    VI+G G A    AR + +    +  L +++ +    Y +P L+ G+    +K  
Sbjct: 2   SERAPLVIIGTGLAGYNLAREWRKLD-GETPLLMITADDGRSYSKPMLSTGFS--KNKDA 58

Query: 109 ARLPGFHTCVGSGGERQTPE-WYKEKGIEMIYQDPVTSIDIEKQTLITNSGKLLKYGSLI 167
             L               P    ++    ++    VT ID   Q +     ++ +Y  L+
Sbjct: 59  DGL-----------AMAEPGAMAEQLNARILTHTRVTGIDPGHQRIWIGEEEV-RYRDLV 106

Query: 168 VATGCTASRFPEKIGGYLPGVHYIRDVADADALISSLEKAKKVVVVGGGYIGMEVAAAAV 227
           +A G    R P + G     ++ I D+ D      +    ++V+++G G IG E A    
Sbjct: 107 LAWGAEPIRVPVE-GDAQDALYPINDLEDYARFRQAAAGKRRVLLLGAGLIGCEFANDLS 165

Query: 228 GWKLDTT-------------------RYEQLYQQNGVKFVKGASIKNLEAGSDGRVAAVK 268
                                       +   +  GV+F  G  + +L+    G      
Sbjct: 166 SGGYQLDVVAPCEQVMPGLLHPAAAKAVQAGLEGLGVRFHLGPVLASLKK--AGEGLEAH 223

Query: 269 LEDGSTIDADTIVIGIGAKPTVSPFERVGLNSSVG-GIQVDGQFRTRMPGIFAIGDVAAF 327
           L DG  I  D +V  +G +P        GL  +V  GI VD   RT    I+A+GD A  
Sbjct: 224 LSDGEVIPCDLVVSAVGLRPRTELAFAAGL--AVNRGIVVDRSLRTSHANIYALGDCAEV 281

Query: 328 PLKMYDRTARVEHVDHARQSAQHCIKALLSAQTHTYDYLP 367
                       +V      A+   + L    +    Y P
Sbjct: 282 DGLNL------LYVMPLMACARALAQTLAGNPS-QVAYGP 314

>3klj_A NAD(FAD)-dependent dehydrogenase, NIRB-family (N- domain); FAD-binding protein, GR-fold, oxidoreductase; HET: FAD; 2.10A {Clostridium acetobutylicum} Length = 385

 Score =  187 bits (477), Expect = 5e-55
 Identities = 73/424 (17%), Positives = 142/424 (33%), Gaps = 77/424 (18%)

Query: 48  ANENREFVIVGGGNAAGYAARTFVEHGMADGRLCIVSKEAYAPYERPALTKGYLFPLDKK 107
            +++ + +I+G G A   AA+  +        + +++ E Y PY RP L    +   +K 
Sbjct: 6   HHKSTKILILGAGPAGFSAAKAALGK---CDDITMINSEKYLPYYRPRLN--EIIAKNKS 60

Query: 108 PARLPGFHTCVGSGGERQTPEWYKEKGIEMIYQDPVTSIDIEKQTLITNSGKLLKYGSLI 167
              +                +WY++  I++I  +  TSID   + +   SG+ +KY  LI
Sbjct: 61  IDDIL-IKK----------NDWYEKNNIKVITSEFATSIDPNNKLVTLKSGEKIKYEKLI 109

Query: 168 VATGCTASRFPEKIGGYLPGVHYIRDVADADALISSLEKAKKVVVVGGGYIGMEVAAAAV 227
           +A+G  A++    +      +  +    DA  +    +   K  ++GGG +G+E+A A +
Sbjct: 110 IASGSIANKIK--VPH-ADEIFSLYSYDDALKIKDECKNKGKAFIIGGGILGIELAQAII 166

Query: 228 GWKLDTT-------------------RYEQLYQQNGVKFVKGASIKNLEAGSDGRVAAVK 268
                 +                     +    + G+K    ++ +              
Sbjct: 167 DSGTPASIGIILEYPLERQLDRDGGLFLKDKLDRLGIKIYTNSNFE-------------- 212

Query: 269 LEDGSTIDADTIVIGIGAKPTVSPFERVGLNSSVGGIQVDGQFRTRMPGIFAIGDVAAFP 328
            E G  I +  ++  +G KP +   +   + S   GI V+    T +  I+A GDVA F 
Sbjct: 213 -EMGDLIRSSCVITAVGVKPNLDFIKDTEIASK-RGILVNDHMETSIKDIYACGDVAEFY 270

Query: 329 LKMYDRTARVEHVDHARQSAQHCIKALLSAQTHTYD-YLPYFYSRVFEYE-GSPRKVWWQ 386
            K                +  +        +  +Y   +P    +V      S       
Sbjct: 271 GKNPGLINIA--NKQGEVAGLN-----ACGEDASYSEIIPSPILKVSGISIIS------- 316

Query: 387 FFGDNVGETIEIGNFDPKIATF---WIDSGKLKG-VLVESGSPEEFQLLPTLARSQPFVD 442
             GD             +   +    +   K+    ++  G       L     S    D
Sbjct: 317 -CGDIENNKPSKVFRSTQEDKYIVCMLKENKIDAAAVI--GDVSLGTKLKKAIDSSKSFD 373

Query: 443 KAKL 446
               
Sbjct: 374 NISS 377

>1xhc_A NADH oxidase /nitrite reductase; southe collaboratory for structural genomics, secsg, hyperthermoph protein structure initiative, PSI; HET: FAD; 2.35A {Pyrococcus furiosus} SCOP: c.3.1.5 c.3.1.5 d.87.1.1 Length = 367

 Score =  168 bits (429), Expect = 3e-48
 Identities = 72/296 (24%), Positives = 121/296 (40%), Gaps = 48/296 (16%)

Query: 55  VIVGGGNAAGYAARTFVEHGMADGRLCIVSKEAYAPYERPALTKGYLFPLDKKPARLPGF 114
           VIVG G      A+   +       + ++ KE    Y +P L+  +         RL   
Sbjct: 12  VIVGNGPGGFELAKQLSQ----TYEVTVIDKEPVPYYSKPMLS--HYIAGFIPRNRL--- 62

Query: 115 HTCVGSGGERQTPEWYKEKGIEMIYQDPVTSIDIEKQTLITNSGKLLKYGSLIVATGCTA 174
                      + +WY+++GIE+   +    ID  ++ +IT  G++  Y +L++ATG  A
Sbjct: 63  --------FPYSLDWYRKRGIEIRLAEEAKLIDRGRKVVITEKGEV-PYDTLVLATGARA 113

Query: 175 SRFPEKIGGYLPGVHYIRDVADADALISSLEKAKKVVVVGGGYIGMEVAAAAVGWKLDTT 234
                 I G    +  +R + DAD +  S+E + + +++GGG+IG+E+A           
Sbjct: 114 REPQ--IKG-KEYLLTLRTIFDADRIKESIENSGEAIIIGGGFIGLELAGNLAEAGYHVK 170

Query: 235 ---RYEQLYQ--------------QNGVKFVKGASIKNLEAGSDGRVAAVKLEDGSTIDA 277
              R                    + GVKF   + +   EA  +G      L +   I+ 
Sbjct: 171 LIHRGAMFLGLDEELSNMIKDMLEETGVKFFLNSELL--EANEEGV-----LTNSGFIEG 223

Query: 278 DTIVIGIGAKPTVSPFERVGLNSSVG-GIQVDGQFRTRMPGIFAIGDVAAFPLKMY 332
              +  IG  P V    R G+    G GI +D  FRT    ++AIGD A +   + 
Sbjct: 224 KVKICAIGIVPNVDLARRSGI--HTGRGILIDDNFRTSAKDVYAIGDCAEYSGIIA 277

>2cdu_A NADPH oxidase; flavoenzyme, oxidoreductase; HET: FAD ADP; 1.8A {Lactobacillus sanfranciscensis} Length = 452

 Score =  150 bits (381), Expect = 1e-40
 Identities = 61/229 (26%), Positives = 91/229 (39%), Gaps = 33/229 (14%)

Query: 125 QTPEWYKEKGIEMIYQDPVTSIDIEKQT-----LITNSGKLLKYGSLIVATGCTASRFPE 179
            +PE     G  +  +  VT++D E +T     LITN  K   Y  LI+ TG   +  P 
Sbjct: 63  SSPEELSNLGANVQMRHQVTNVDPETKTIKVKDLITNEEKTEAYDKLIMTTGSKPTV-PP 121

Query: 180 KIGGYLPGVHYIRDVADADALISSLEKAKKVVVVGGGYIGMEVAAAAVGWKLDTT----- 234
             G     V+  ++  DA  L     KAK + ++G GYIG E+A A      +       
Sbjct: 122 IPGIDSSRVYLCKNYNDAKKLFEEAPKAKTITIIGSGYIGAELAEAYSNQNYNVNLIDGH 181

Query: 235 -----RY---------EQLYQQNGVKFVKGASIKNLEAGSDGRVAAVKLEDGSTIDADTI 280
                +Y          + Y+ +GV  V G+ +   E   D  +      DG  I +D  
Sbjct: 182 ERVLYKYFDKEFTDILAKDYEAHGVNLVLGSKVAAFE-EVDDEIITK-TLDGKEIKSDIA 239

Query: 281 VIGIGAKPTVSPFE---RVGLNSSVGGIQVDGQFRTRMPGIFAIGDVAA 326
           ++ IG +P     +    +  N   G I  D    +    IFA GD AA
Sbjct: 240 ILCIGFRPNTELLKGKVAMLDN---GAIITDEYMHSSNRDIFAAGDSAA 285

>3oc4_A Oxidoreductase, pyridine nucleotide-disulfide FAM; structural genomics, PSI-2, protein structure initiative; HET: FAD; 2.60A {Enterococcus faecalis} Length = 452

 Score =  149 bits (378), Expect = 3e-40
 Identities = 46/227 (20%), Positives = 88/227 (38%), Gaps = 32/227 (14%)

Query: 125 QTPEWYKEKGIEMIYQDPVTSIDIEKQTLI---TNSGKLLKYGSLIVATGCTASRFPEKI 181
            T E  + + I+++    V ++D+E Q +        +   Y  LI+ATG +      + 
Sbjct: 63  ITEEELRRQKIQLLLNREVVAMDVENQLIAWTRKEEQQWYSYDKLILATGASQFSTQIR- 121

Query: 182 GGYLPGVHYIRDVADADALISSLEKAKKVVVVGGGYIGMEVAAAAVGWKLDTT------- 234
           G     +   + ++ A A +  LE ++ V V+G G IGME     V  K           
Sbjct: 122 GSQTEKLLKYKFLSGALAAVPLLENSQTVAVIGAGPIGMEAIDFLVKMKKTVHVFESLEN 181

Query: 235 ---RY---------EQLYQQNGVKFVKGASIKNLEAGSDGRVAAVKLEDGSTIDADTIVI 282
              +Y         ++  ++  V F    ++  +E         +       I  D+ + 
Sbjct: 182 LLPKYFDKEMVAEVQKSLEKQAVIFHFEETVLGIE--ETANGIVL-ETSEQEISCDSGIF 238

Query: 283 GIGAKPTVSPFE---RVGLNSSVGGIQVDGQFRTRMPGIFAIGDVAA 326
            +   P ++  +   +  L+     I VD   +T +P +FAIGD  +
Sbjct: 239 ALNLHPQLAYLDKKIQRNLD---QTIAVDAYLQTSVPNVFAIGDCIS 282

>1nhp_A NADH peroxidase; oxidoreductase (H2O2(A)); HET: FAD; 2.00A {Enterococcus faecalis} SCOP: c.3.1.5 c.3.1.5 d.87.1.1 PDB: 1npx_A* 1joa_A* 2npx_A* 1nhq_A* 1nhs_A* 1nhr_A* 1f8w_A* Length = 447

 Score =  144 bits (365), Expect = 2e-38
 Identities = 53/231 (22%), Positives = 91/231 (39%), Gaps = 36/231 (15%)

Query: 125 QTPEWYKEKGIEMIYQDPVTSIDIEKQT-----LITNSGKLLKYGSLIVATGCTASRFPE 179
            T E  + +G+ +     +T+I  ++       L++   ++  Y  LI++ G        
Sbjct: 61  MTGEKMESRGVNVFSNTEITAIQPKEHQVTVKDLVSGEERVENYDKLIISPGAVPFELDI 120

Query: 180 KIGGYLPGVHYIRDVADADALISSLE--KAKKVVVVGGGYIGMEVAAAAVGWKLDTT--- 234
             G  L  ++ +R    A  L       +   VVV+G GYIG+E A A        T   
Sbjct: 121 P-GKDLDNIYLMRGRQWAIKLKQKTVDPEVNNVVVIGSGYIGIEAAEAFAKAGKKVTVID 179

Query: 235 ----------------RYEQLYQQNGVKFVKGASIKNLEAGSDGRVAAVKLEDGSTIDAD 278
                              +  + N +    G +++  E   DGRV  V + D +  DAD
Sbjct: 180 ILDRPLGVYLDKEFTDVLTEEMEANNITIATGETVERYE--GDGRVQKV-VTDKNAYDAD 236

Query: 279 TIVIGIGAKPTVSPFE---RVGLNSSVGGIQVDGQFRTRMPGIFAIGDVAA 326
            +V+ +G +P  +  +    +  N   G I+ D   RT  P +FA+GD   
Sbjct: 237 LVVVAVGVRPNTAWLKGTLELHPN---GLIKTDEYMRTSEPDVFAVGDATL 284

>3ics_A Coenzyme A-disulfide reductase; pyridine nucleotide-disulfide oxidoreductase class I, rhodan coenzyme A, flavin adenine dinucleotide; HET: FAD COA ADP; 1.94A {Bacillus anthracis} PDB: 3icr_A* 3ict_A* Length = 588

 Score =  146 bits (370), Expect = 2e-38
 Identities = 55/228 (24%), Positives = 98/228 (42%), Gaps = 31/228 (13%)

Query: 125 QTPEWYKEK-GIEMIYQDPVTSIDIEKQT-----LITNSGKLLKYGSLIVATGCTASRFP 178
           QT E   ++  +++     V  I+ E++T     + TN      Y  LI++ G       
Sbjct: 97  QTVERMSKRFNLDIRVLSEVVKINKEEKTITIKNVTTNETYNEAYDVLILSPGAKPIVPS 156

Query: 179 EKIGGYLPGVHYIRDVADADALISSLE--KAKKVVVVGGGYIGMEVAAAAVGWKLDTT-- 234
                    +  +R+V D D + + ++  K +   V+GGG+IG+E+        ++ T  
Sbjct: 157 IPGIEEAKALFTLRNVPDTDRIKAYIDEKKPRHATVIGGGFIGVEMVENLRERGIEVTLV 216

Query: 235 ----------------RYEQLYQQNGVKFVKGASIKNLEAGSDGRVAAVKLEDGSTIDAD 278
                              +  + + V+ V    +  LE   +G V  V+L+ GS I  D
Sbjct: 217 EMANQVMPPIDYEMAAYVHEHMKNHDVELVFEDGVDALE--ENGAV--VRLKSGSVIQTD 272

Query: 279 TIVIGIGAKPTVSPFERVGLN-SSVGGIQVDGQFRTRMPGIFAIGDVA 325
            +++ IG +P  S  +  GL     G I+V+ +F+T  P I+AIGD  
Sbjct: 273 MLILAIGVQPESSLAKGAGLALGVRGTIKVNEKFQTSDPHIYAIGDAI 320

>3cgb_A Pyridine nucleotide-disulfide oxidoreductase, CLA; coenzyme A, flavin adenine dinucleotide, selenomethionine, F flavoprotein; HET: COA FAD; 1.90A {Bacillus anthracis str} PDB: 3cgc_A* 3cgd_A* 3cge_A* Length = 480

 Score =  143 bits (364), Expect = 4e-38
 Identities = 55/229 (24%), Positives = 103/229 (44%), Gaps = 31/229 (13%)

Query: 125 QTPEWYKEK-GIEMIYQDPVTSIDIEKQT-----LITNSGKLLKYGSLIVATGCTASRFP 178
           +  + +++K GI+   +  VT +D EK+        T       Y  L++ATG       
Sbjct: 97  RNVKTFRDKYGIDAKVRHEVTKVDTEKKIVYAEHTKTKDVFEFSYDRLLIATGVRPVMPE 156

Query: 179 EKIGGYLPGVHYIRDVADADALISSLE--KAKKVVVVGGGYIGMEVAAAAVGWKLDTT-- 234
            + G  L GVH ++ + DA+ ++ +LE  K + V ++GGG IG+E+A   V         
Sbjct: 157 WE-GRDLQGVHLLKTIPDAERILKTLETNKVEDVTIIGGGAIGLEMAETFVELGKKVRMI 215

Query: 235 -RYEQL---------------YQQNGVKFVKGASIKNLEAGSDGRVAAVKLEDGSTIDAD 278
            R + +                 ++ ++ +   ++K  +   + RV AV+  D  T  AD
Sbjct: 216 ERNDHIGTIYDGDMAEYIYKEADKHHIEILTNENVKAFK--GNERVEAVET-DKGTYKAD 272

Query: 279 TIVIGIGAKPTVSPFERVGLN-SSVGGIQVDGQFRTRMPGIFAIGDVAA 326
            +++ +G KP     E   +  +  G I+V+   +T +  ++A GD A 
Sbjct: 273 LVLVSVGVKPNTDFLEGTNIRTNHKGAIEVNAYMQTNVQDVYAAGDCAT 321

>3kd9_A Coenzyme A disulfide reductase; PSI-II, NYSGXRC, oxidoreductase, structural genomics structure initiative; 2.75A {Pyrococcus horikoshii} Length = 449

 Score =  143 bits (363), Expect = 4e-38
 Identities = 52/225 (23%), Positives = 90/225 (40%), Gaps = 27/225 (12%)

Query: 125 QTPEWYKEK-GIEMIYQDPVTSIDIEKQT-LITNSGKLLKYGSLIVATGCTASRFPEKIG 182
             PE + +K GI++     V  +D            K  ++  L+ A G +    P   G
Sbjct: 63  YPPEVFIKKRGIDLHLNAEVIEVDTGYVRVRENGGEKSYEWDYLVFANGASPQV-PAIEG 121

Query: 183 GYLPGVHYIRDVADADALISSLE--KAKKVVVVGGGYIGMEVAAAAVGWKLDTTRYEQLY 240
             L GV       DA A+   +E  K + VV++GGGYIG+E+A A      + T   +  
Sbjct: 122 VNLKGVFTADLPPDALAIREYMEKYKVENVVIIGGGYIGIEMAEAFAAQGKNVTMIVRGE 181

Query: 241 Q------------------QNGVKFVKGASIKNLEAGSDGRVAAVKLEDGSTIDADTIVI 282
           +                  +  V          +E   + RV  V + D     A+ +++
Sbjct: 182 RVLRRSFDKEVTDILEEKLKKHVNLRLQEITMKIE--GEERVEKV-VTDAGEYKAELVIL 238

Query: 283 GIGAKPTVSPFERVGLN-SSVGGIQVDGQFRTRMPGIFAIGDVAA 326
             G KP +   +++G+     G I  + + +T +  ++A GDVA 
Sbjct: 239 ATGIKPNIELAKQLGVRIGETGAIWTNEKMQTSVENVYAAGDVAE 283

>3iwa_A FAD-dependent pyridine nucleotide-disulphide oxidoreductase; structural genomics, PSI-2, protein structur initiative; 2.30A {Desulfovibrio vulgaris} Length = 472

 Score =  143 bits (363), Expect = 5e-38
 Identities = 65/232 (28%), Positives = 103/232 (44%), Gaps = 34/232 (14%)

Query: 125 QTPEWYKEK-GIEMIYQDPVTSIDIEKQT-----LITNSGKLLKYGSLIVATGCTASRFP 178
           + PE+++    +E + +    +ID    T     L T   + LKY  L++A G  A+R P
Sbjct: 70  RDPEFFRINKDVEALVETRAHAIDRAAHTVEIENLRTGERRTLKYDKLVLALGSKANRPP 129

Query: 179 EKIGGY-LPGVHYIRDVADADALISSLE--KAKKVVVVGGGYIGMEVA---AAAVGWK-- 230
             + G  L GV  + ++ +A+ +  ++   +  K V+VGGG+IG+E+A   A   G    
Sbjct: 130 --VEGMDLAGVTPVTNLDEAEFVQHAISAGEVSKAVIVGGGFIGLEMAVSLADMWGIDTT 187

Query: 231 ------------LD---TTRYEQLYQQNGVKFVKGASIKNLEAGSDGRVAAVKLEDGSTI 275
                            +       ++N V    G  +  LE G +G+VA V + D  T+
Sbjct: 188 VVELADQIMPGFTSKSLSQMLRHDLEKNDVVVHTGEKVVRLE-GENGKVARV-ITDKRTL 245

Query: 276 DADTIVIGIGAKPTVSPFERVGLN-SSVGGIQVDGQFRTRMPGIFAIGDVAA 326
           DAD +++  G  P        GL     G I VD + RT  P IFA GD   
Sbjct: 246 DADLVILAAGVSPNTQLARDAGLELDPRGAIIVDTRMRTSDPDIFAGGDCVT 297

>2bc0_A NADH oxidase; flavoprotein, pyridine nucleotide disulfide oxidoreductase, C(4A)-peroxyflavin, crystallography, conformational dynamics; HET: FAD; 2.00A {Streptococcus pyogenes} PDB: 2bcp_A* 2bc1_A* Length = 490

 Score =  142 bits (360), Expect = 1e-37
 Identities = 53/239 (22%), Positives = 100/239 (41%), Gaps = 43/239 (17%)

Query: 125 QTPEWYKEKGIEMIYQDPVTSIDIEKQT---LITNSGKLLKYGSLIVATGCTASRFP--- 178
              E  +  G ++  + PV SID + +T   L+     +  Y  LI ATG      P   
Sbjct: 97  SDKEELESLGAKVYMESPVQSIDYDAKTVTALVDGKNHVETYDKLIFATGSQPILPPIKG 156

Query: 179 -------EKIGGYLPGVHYIRDVADADALISSLE--KAKKVVVVGGGYIGMEVAAAAVGW 229
                   +    L  + +++   ++  +I+ LE    K+V VVG GYIG+E+A A    
Sbjct: 157 AEIKEGSLEFEATLENLQFVKLYQNSADVIAKLENKDIKRVAVVGAGYIGVELAEAFQRK 216

Query: 230 KLDTT-------------------RYEQLYQQNGVKFVKGASIKNLEAGSDGRVAAVKLE 270
             +                        +  +++G++   G ++K +    +G+V  + + 
Sbjct: 217 GKEVVLIDVVDTCLAGYYDRDLTDLMAKNMEEHGIQLAFGETVKEVA--GNGKVEKI-IT 273

Query: 271 DGSTIDADTIVIGIGAKPTVSPFE---RVGLNSSVGGIQVDGQFRTRMPGIFAIGDVAA 326
           D +  D D +++ +G +P  +       +  N   G   V+ +  T +PG++AIGD A 
Sbjct: 274 DKNEYDVDMVILAVGFRPNTTLGNGKIDLFRN---GAFLVNKRQETSIPGVYAIGDCAT 329

>1yqz_A Coenzyme A disulfide reductase; oxidoreductase; HET: COA FAD; 1.54A {Staphylococcus aureus} Length = 438

 Score =  138 bits (351), Expect = 2e-36
 Identities = 52/229 (22%), Positives = 91/229 (39%), Gaps = 37/229 (16%)

Query: 125 QTPEWYKEK-GIEMIYQDPVTSIDIEKQT-----LITNSGKLLKYGSLIVATGCTASRFP 178
            TPE + ++  I +     V +I+ E+QT       TN      Y  LI++ G +     
Sbjct: 62  YTPEKFYDRKQITVKTYHEVIAINDERQTVSVLNRKTNEQFEESYDKLILSPGAS----A 117

Query: 179 EKIGGYLPGVHYIRDVADADALISSLE--KAKKVVVVGGGYIGMEVAAAAVGWKLDTTRY 236
             +G        +R++ D DA+   ++  +  KV+VVG GY+ +EV        L  T  
Sbjct: 118 NSLGFESDITFTLRNLEDTDAIDQFIKANQVDKVLVVGAGYVSLEVLENLYERGLHPTLI 177

Query: 237 EQLYQ------------------QNGVKFVKGASIKNLEAGSDGRVAAVKLEDGSTIDAD 278
            +  +                  +  + +     I  +  G++     +  + G     D
Sbjct: 178 HRSDKINKLMDADMNQPILDELDKREIPYRLNEEINAIN-GNE-----ITFKSGKVEHYD 231

Query: 279 TIVIGIGAKPTVSPFERVGLN-SSVGGIQVDGQFRTRMPGIFAIGDVAA 326
            I+ G+G  P     E   +     G I V+ +F T +P I+AIGD+A 
Sbjct: 232 MIIEGVGTHPNSKFIESSNIKLDRKGFIPVNDKFETNVPNIYAIGDIAT 280

>3ntd_A FAD-dependent pyridine nucleotide-disulphide oxidoreductase; COA, persulfide reductase, rhodanese; HET: COA FAD; 1.99A {Shewanella loihica} PDB: 3nta_A* 3nt6_A* Length = 565

 Score =  136 bits (346), Expect = 3e-35
 Identities = 55/248 (22%), Positives = 100/248 (40%), Gaps = 49/248 (19%)

Query: 125 QTPEWYKEK-GIEMIYQDPVTSIDIEKQT-----LITNSGKLLKYGSLIVATGCTASRFP 178
           QTPE +K +  +E+  +  V +ID   +      L+  S     Y +L+++ G      P
Sbjct: 62  QTPESFKARFNVEVRVKHEVVAIDRAAKLVTVRRLLDGSEYQESYDTLLLSPGAAPIVPP 121

Query: 179 EKIGGY-LPGVHYIRDVADADALISSLE--KAKKVVVVGGGYIGMEVAAAAVGWKLDTT- 234
             I G   P  H +R++ D D ++ +++    +   VVGGG+IG+E+  +     + TT 
Sbjct: 122 --IPGVDNPLTHSLRNIPDMDRILQTIQMNNVEHATVVGGGFIGLEMMESLHHLGIKTTL 179

Query: 235 -----------------RYEQLYQQNGVKFVKGASIKNLE------------------AG 259
                               Q  +  GV    G ++  +                     
Sbjct: 180 LELADQVMTPVDREMAGFAHQAIRDQGVDLRLGTALSEVSYQVQTHVASDAAGEDTAHQH 239

Query: 260 SDGRVAAVKLEDGSTIDADTIVIGIGAKPTVSPFERVGLN-SSVGGIQVDGQFRTRMPGI 318
             G ++   L +G  ++ D +++ IG +P        GL    +GGI+V+   +T  P I
Sbjct: 240 IKGHLSLT-LSNGELLETDLLIMAIGVRPETQLARDAGLAIGELGGIKVNAMMQTSDPAI 298

Query: 319 FAIGDVAA 326
           +A+GD   
Sbjct: 299 YAVGDAVE 306

>3o0h_A Glutathione reductase; ssgcid, structur genomics, seattle structural genomics center for infectious gluathione reductase, oxidoreductase; HET: FAD; 1.90A {Bartonella henselae} Length = 484

 Score = 98.7 bits (247), Expect = 2e-22
 Identities = 48/199 (24%), Positives = 84/199 (42%), Gaps = 45/199 (22%)

Query: 154 ITNSGKLLKYGSLIVATGCTASRFPEKIGGYLPGVHYIRDVADADALISS-----LEKA- 207
           ++ +G+ +    +++ATG             + G             ++S     LEK  
Sbjct: 146 LSVTGERISAEKILIATGAKIVSNSA-----IKGSDLC---------LTSNEIFDLEKLP 191

Query: 208 KKVVVVGGGYIGMEVAAAAVGWKLDTT---RYEQL---------------YQQNGVKFVK 249
           K +V+VGGGYIG+E A    G  + TT   R + +                   G+  + 
Sbjct: 192 KSIVIVGGGYIGVEFANIFHGLGVKTTLLHRGDLILRNFDYDLRQLLNDAMVAKGISIIY 251

Query: 250 GASIKNLEAGSDGRVAAVKLEDGSTIDADTIVIGIGAKPTVSPF--ERVG--LNSSVGGI 305
            A++  +++  +     V L +G TI AD +++  G  P  +    ER G  +N   G +
Sbjct: 252 EATVSQVQSTENCYN--VVLTNGQTICADRVMLATGRVPNTTGLGLERAGVKVNEF-GAV 308

Query: 306 QVDGQFRTRMPGIFAIGDV 324
            VD +  T +  I+A+GDV
Sbjct: 309 VVDEKMTTNVSHIWAVGDV 327

>1onf_A GR, grase, glutathione reductase; oxidoreductase; HET: FAD; 2.60A {Plasmodium falciparum} SCOP: c.3.1.5 c.3.1.5 d.87.1.1 Length = 500

 Score = 98.9 bits (247), Expect = 2e-22
 Identities = 38/210 (18%), Positives = 78/210 (37%), Gaps = 42/210 (20%)

Query: 167 IVATGCTASRFPEKIGGYLPGVHYIRDVADADALISS-----LEKAKKVVVVGGGYIGME 221
           ++A G      P      + G+            ISS     ++++KK+ +VG GYI +E
Sbjct: 146 LIAVGNKPVFPP------VKGIENT---------ISSDEFFNIKESKKIGIVGSGYIAVE 190

Query: 222 VAAAAVGWKLDTT---RYEQL---------------YQQNGVKFVKGASIKNLEAGSDGR 263
           +        +D+    R  ++                ++N +  V  A +  ++  SD  
Sbjct: 191 LINVIKRLGIDSYIFARGNRILRKFDESVINVLENDMKKNNINIVTFADVVEIKKVSDKN 250

Query: 264 VAAVKLEDGSTI-DADTIVIGIGAKPTVSPF--ERVGLNSSVGGIQVDGQFRTRMPGIFA 320
           ++ + L DG      D ++  +G  P       E++ + ++   I VD   RT +  I+A
Sbjct: 251 LS-IHLSDGRIYEHFDHVIYCVGRSPDTENLKLEKLNVETNNNYIVVDENQRTSVNNIYA 309

Query: 321 IGDVAAFPLKMYDRTARVEHVDHARQSAQH 350
           +GD              +  + +  +    
Sbjct: 310 VGDCCMVKKSKEIEDLNLLKLYNEERYLNK 339

>1ges_A Glutathione reductase; oxidoreductase(flavoenzyme); HET: FAD; 1.74A {Escherichia coli} SCOP: c.3.1.5 c.3.1.5 d.87.1.1 PDB: 1geu_A* 1ger_A* 1get_A* Length = 450

 Score = 98.3 bits (246), Expect = 2e-22
 Identities = 49/186 (26%), Positives = 72/186 (38%), Gaps = 45/186 (24%)

Query: 167 IVATGCTASRFPEKIGGYLPGVHYIRDVADADALISS-----LEKA-KKVVVVGGGYIGM 220
           ++ATG   S  P+     +PGV Y          I S     L    ++V VVG GYIG+
Sbjct: 136 LIATGGRPSH-PD-----IPGVEYG---------IDSDGFFALPALPERVAVVGAGYIGV 180

Query: 221 EVAAAAVGWKLDTT---RYEQL---------------YQQNGVKFVKGASIKNLEAGSDG 262
           E+     G    T     ++                     G +    A  K +   +DG
Sbjct: 181 ELGGVINGLGAKTHLFEMFDAPLPSFDPMISETLVEVMNAEGPQLHTNAIPKAVVKNTDG 240

Query: 263 RVAAVKLEDGSTIDADTIVIGIGAKPTVSPF--ERVG--LNSSVGGIQVDGQFRTRMPGI 318
            +  ++LEDG +   D ++  IG +P       E  G   N   G I VD    T + GI
Sbjct: 241 SLT-LELEDGRSETVDCLIWAIGREPANDNINLEAAGVKTNEK-GYIVVDKYQNTNIEGI 298

Query: 319 FAIGDV 324
           +A+GD 
Sbjct: 299 YAVGDN 304

>2wpf_A Trypanothione reductase; oxidoreductase, trypanosomiasis, sleeping sickness, flavoPro redox-active center; HET: FAD WPF; 1.90A {Trypanosoma brucei} PDB: 2wov_A* 2wow_A* 2wp5_A* 2wp6_A* 2wpc_A* 2wpe_A* 2woi_A* 2wba_A* 1nda_A* 1gxf_A* 1bzl_A* 1aog_A* Length = 495

 Score = 96.5 bits (241), Expect = 1e-21
 Identities = 50/189 (26%), Positives = 77/189 (40%), Gaps = 48/189 (25%)

Query: 167 IVATGCTASRFPEKIGGYLPGVHYIRDVADADALISS-----LEKA-KKVVVVGGGYIGM 220
           ++ATG      P      +PG+ +          ISS     L +  ++V+ VGGG+I +
Sbjct: 160 LLATGSWPQM-PA-----IPGIEHC---------ISSNEAFYLPEPPRRVLTVGGGFISV 204

Query: 221 EVA---AAAVGWKLDTT---RYEQL---------------YQQNGVKFVKGASIKNLEAG 259
           E A    A        T   R   +                  NG++ +   +   +   
Sbjct: 205 EFAGIFNAYKPPGGKVTLCYRNNLILRGFDETIREEVTKQLTANGIEIMTNENPAKVSLN 264

Query: 260 SDGRVAAVKLEDGSTIDADTIVIGIGAKPTVSPF--ERVG--LNSSVGGIQVDGQFRTRM 315
           +DG    V  E G T+D D +++ IG  P  +      VG  L    GG+QVD   RT +
Sbjct: 265 TDGSKH-VTFESGKTLDVDVVMMAIGRIPRTNDLQLGNVGVKLTPK-GGVQVDEFSRTNV 322

Query: 316 PGIFAIGDV 324
           P I+AIGD+
Sbjct: 323 PNIYAIGDI 331

>4dna_A Probable glutathione reductase; structural genomics, protein structure initiative, NEW YORK structural genomix research consortium; HET: FAD; 2.80A {Sinorhizobium meliloti} Length = 463

 Score = 95.3 bits (238), Expect = 2e-21
 Identities = 49/199 (24%), Positives = 82/199 (41%), Gaps = 44/199 (22%)

Query: 154 ITNSGKLLKYGSLIVATGCTASRFPEKIGGYLPGVHYIRDVADADALISS-----LEKA- 207
           +  SGK +    +++A G   S   + +    PG             I+S     L    
Sbjct: 125 LLASGKTVTAERIVIAVGGHPSP-HDAL----PGHELC---------ITSNEAFDLPALP 170

Query: 208 KKVVVVGGGYIGMEVAAAAVGWKLDTT---RYEQL---------------YQQNGVKFVK 249
           + +++ GGGYI +E A    G  + TT   R +++                ++ G++ + 
Sbjct: 171 ESILIAGGGYIAVEFANIFHGLGVKTTLIYRGKEILSRFDQDMRRGLHAAMEEKGIRILC 230

Query: 250 GASIKNLEAGSDGRVAAVKLEDGSTIDADTIVIGIGAKPTVSPF--ERVG--LNSSVGGI 305
              I+++ A +DGR           I AD +++ +G  P  +    E  G   N   G I
Sbjct: 231 EDIIQSVSADADGRRV-ATTMKHGEIVADQVMLALGRMPNTNGLGLEAAGVRTNEL-GAI 288

Query: 306 QVDGQFRTRMPGIFAIGDV 324
            VD   RT  PGI+A+GDV
Sbjct: 289 IVDAFSRTSTPGIYALGDV 307

>1fec_A Trypanothione reductase; redox-active center, oxidoreductase, flavoprotein, FAD, NADP; HET: FAD; 1.70A {Crithidia fasciculata} SCOP: c.3.1.5 c.3.1.5 d.87.1.1 PDB: 1fea_A* 1feb_A* 2tpr_A* 1tyt_A* 1typ_A* 2jk6_A* 2w0h_A* 2yau_A* 2x50_A* 2ve2_A* Length = 490

 Score = 95.3 bits (238), Expect = 3e-21
 Identities = 44/189 (23%), Positives = 71/189 (37%), Gaps = 48/189 (25%)

Query: 167 IVATGCTASRFPEKIGGYLPGVHYIRDVADADALISS-----LEKA-KKVVVVGGGYIGM 220
           ++ATG             + G             I+S     L++A K+ + VGGGYI +
Sbjct: 156 LLATGSWPQH-LG-----IEGDDLC---------ITSNEAFYLDEAPKRALCVGGGYISI 200

Query: 221 EVA---AAAVGWKLDTT---RYEQL---------------YQQNGVKFVKGASIKNLEAG 259
           E A    A            R + +                + NG+      +   +   
Sbjct: 201 EFAGIFNAYKARGGQVDLAYRGDMILRGFDSELRKQLTEQLRANGINVRTHENPAKVTKN 260

Query: 260 SDGRVAAVKLEDGSTIDADTIVIGIGAKPTVSPF--ERVG--LNSSVGGIQVDGQFRTRM 315
           +DG    V  E G+  D D +++ IG  P       E+ G  +  + G I+VD   +T +
Sbjct: 261 ADGTRH-VVFESGAEADYDVVMLAIGRVPRSQTLQLEKAGVEVAKN-GAIKVDAYSKTNV 318

Query: 316 PGIFAIGDV 324
             I+AIGDV
Sbjct: 319 DNIYAIGDV 327

>1xdi_A RV3303C-LPDA; reductase, FAD, NAD, NADP, unkno function; HET: FAD; 2.81A {Mycobacterium tuberculosis} SCOP: c.3.1.5 d.87.1.1 Length = 499

 Score = 93.4 bits (233), Expect = 1e-20
 Identities = 46/213 (21%), Positives = 74/213 (34%), Gaps = 50/213 (23%)

Query: 143 VTSIDIEKQTLITNSGKLLKYGSLIVATGCTASRFPEKIGGYLPGVHYIRDVADADALIS 202
            T+ D        +         ++VATG +           LP         D + +++
Sbjct: 133 ATAADGSTSEHEADV--------VLVATGASPRI--------LPSAQP-----DGERILT 171

Query: 203 S-----LEKA-KKVVVVGGGYIGMEVAA--AAVGWK------LD----------TTRYEQ 238
                 L+     ++VVG G  G E       +G         D              E+
Sbjct: 172 WRQLYDLDALPDHLIVVGSGVTGAEFVDAYTELGVPVTVVASQDHVLPYEDADAALVLEE 231

Query: 239 LYQQNGVKFVKGASIKNLEAGSDGRVAAVKLEDGSTIDADTIVIGIGAKPTVSPF--ERV 296
            + + GV+  K A   ++     G    V + DG T++    ++ IG+ P  S    ERV
Sbjct: 232 SFAERGVRLFKNARAASVTRTGAG--VLVTMTDGRTVEGSHALMTIGSVPNTSGLGLERV 289

Query: 297 GLNSSVGG-IQVDGQFRTRMPGIFAIGDVAAFP 328
           G+    G  + VD   RT   GI+A GD     
Sbjct: 290 GIQLGRGNYLTVDRVSRTLATGIYAAGDCTGLL 322

>2hqm_A GR, grase, glutathione reductase; glutathione reductase complexed with FAD, oxidoreductase; HET: NAG FAD GSH; 2.40A {Saccharomyces cerevisiae} Length = 479

 Score = 92.6 bits (231), Expect = 2e-20
 Identities = 56/186 (30%), Positives = 77/186 (41%), Gaps = 43/186 (23%)

Query: 167 IVATGCTASRFPEKIGGYLPGVHYIRDVADADALISS-----LEKA-KKVVVVGGGYIGM 220
           +VATG  A   PE I    PG               S     LE+  KKVVVVG GYIG+
Sbjct: 153 LVATGGKAIF-PENI----PGFELG---------TDSDGFFRLEEQPKKVVVVGAGYIGI 198

Query: 221 EVAAAAVGWKLDTT---RYEQL---------------YQQNGVKFVKGASIKNLEAGSDG 262
           E+A    G   +T    R E +               Y + G+   K + I  +E   + 
Sbjct: 199 ELAGVFHGLGSETHLVIRGETVLRKFDECIQNTITDHYVKEGINVHKLSKIVKVEKNVET 258

Query: 263 RVAAVKLEDGSTI-DADTIVIGIGAKPTVS-PFERVG--LNSSVGGIQVDGQFRTRMPGI 318
               + + D  +I D D ++  IG K  +    E VG  LNS    I  D    T +P I
Sbjct: 259 DKLKIHMNDSKSIDDVDELIWTIGRKSHLGMGSENVGIKLNSH-DQIIADEYQNTNVPNI 317

Query: 319 FAIGDV 324
           +++GDV
Sbjct: 318 YSLGDV 323

>3l8k_A Dihydrolipoyl dehydrogenase; redox-active center, structural genomics, PSI-2, protein structure initiative; HET: ADP; 2.50A {Sulfolobus solfataricus} Length = 466

 Score = 91.5 bits (228), Expect = 5e-20
 Identities = 42/207 (20%), Positives = 78/207 (37%), Gaps = 35/207 (16%)

Query: 143 VTSIDIEKQTLITNSGKLLKYGSLIVATGCTASRFPEKIGGYLPGVHYIRDVADADALIS 202
           V + + ++    T          +I+A+G   ++        LPGV Y     D     +
Sbjct: 121 VKTDEGKEIEAETRY--------MIIASGAETAKLR------LPGVEYCLTSDDIFGYKT 166

Query: 203 SLEKA-KKVVVVGGGYIGMEVAA--AAVGWK--------------LDTTRYEQLYQQNGV 245
           S  K  + +V++G GYIG+E+A+    +G +               D      L     +
Sbjct: 167 SFRKLPQDMVIIGAGYIGLEIASIFRLMGVQTHIIEMLDRALITLEDQDIVNTLLSILKL 226

Query: 246 KFVKGASIKNLEAGSDGRVAAVKLEDG---STIDADTIVIGIGAKP-TVSPFERVGLNSS 301
                + +  ++   D     +         +I  +++V+  G +P        +GL+ S
Sbjct: 227 NIKFNSPVTEVKKIKDDEYEVIYSTKDGSKKSIFTNSVVLAAGRRPVIPEGAREIGLSIS 286

Query: 302 VGGIQVDGQFRTRMPGIFAIGDVAAFP 328
             GI VD   +T +P +FA GD     
Sbjct: 287 KTGIVVDETMKTNIPNVFATGDANGLA 313

>2r9z_A Glutathione amide reductase; NAD, FAD, substrate specificity, oxidoreductase; HET: FAD; 2.10A {Marichromatium gracile} PDB: 2rab_A* Length = 463

 Score = 90.6 bits (226), Expect = 8e-20
 Identities = 40/186 (21%), Positives = 72/186 (38%), Gaps = 45/186 (24%)

Query: 167 IVATGCTASRFPEKIGGYLPGVHYIRDVADADALISS-----LEKA-KKVVVVGGGYIGM 220
           ++ATG      P      LPG             I+S     L++  K+V ++G GYIG+
Sbjct: 135 VIATGGRPIV-PR-----LPGAELG---------ITSDGFFALQQQPKRVAIIGAGYIGI 179

Query: 221 EVAAAAVGWKLDTT---RYEQL---------------YQQNGVKFVKGASIKNLEAGSDG 262
           E+A     +  + T     ++L                   G++     ++  LE  + G
Sbjct: 180 ELAGLLRSFGSEVTVVALEDRLLFQFDPLLSATLAENMHAQGIETHLEFAVAALERDAQG 239

Query: 263 RVAAVKLEDGSTIDADTIVIGIGAKPTVSPF--ERVG--LNSSVGGIQVDGQFRTRMPGI 318
               V  +       D+++  +G  P       E  G  + S+ G +  D    T +PG+
Sbjct: 240 TTL-VAQDGTRLEGFDSVIWAVGRAPNTRDLGLEAAGIEVQSN-GMVPTDAYQNTNVPGV 297

Query: 319 FAIGDV 324
           +A+GD+
Sbjct: 298 YALGDI 303

>3h8l_A NADH oxidase; membrane protein, complete form, rossman-like fold, oxidoreductase; HET: FAD; 2.57A {Acidianus ambivalens} PDB: 3h8i_A* Length = 409

 Score = 89.4 bits (222), Expect = 1e-19
 Identities = 59/377 (15%), Positives = 106/377 (28%), Gaps = 97/377 (25%)

Query: 55  VIVGGGNAAGYAARTFVEHGMADGRLCIVSKEAYAPYERPALTKGYLFPLDKKPARLPGF 114
           +++GG   A  AA T      +   + +++K  ++ Y RPAL                  
Sbjct: 5   LVLGGRFGALTAAYTLKRLVGSKADVKVINKSRFS-YFRPALP-------------HVAI 50

Query: 115 HTCVGSGGERQTPEWYKEKGIEMIYQDPVTSIDIEKQTLIT----NSGKLLKYGSLIVAT 170
                   +    E   EKGI+   +  V  ID +   +       S    +Y  +IV  
Sbjct: 51  GVRDVDELKVDLSEALPEKGIQFQ-EGTVEKIDAKSSMVYYTKPDGSMAEEEYDYVIVGI 109

Query: 171 GCTASRFPEKIGGYLPGVHYIRDVADADAL---ISSLEKAKKVV--------------VV 213
           G       E + G+    + + +   A  L   + S +     +              V 
Sbjct: 110 GAHL--ATELVKGWDKYGYSVCEPEFATKLREKLESFQGGNIAIGSGPFYQGHNPKPKVP 167

Query: 214 GGGYIGMEVAAAAVGWKL-----DTTRY-----------------------------EQL 239
                  + A     +++        +                                +
Sbjct: 168 ENFVPNADSACEGPVFEMSLMLHGYFKKKGMLDKVHVTVFSPGEYLSDLSPNSRKAVASI 227

Query: 240 YQQNGVKFVKGASIKNLEAGSDGRVAAVKLEDGSTIDADTIVI--GIGAKPTV--SPFER 295
           Y Q G+K V    IK +          +  E G+TI AD  ++       P +  S    
Sbjct: 228 YNQLGIKLVHNFKIKEIREH------EIVDEKGNTIPADITILLPPYTGNPALKNSTP-- 279

Query: 296 VGLNSSVGGIQVDGQFR-TRMPGIFAIGDVAAFPLKMYDRTARVEHVDHARQSAQHC--- 351
             L    G I  D      +   ++A+GD  +       +         A  + +     
Sbjct: 280 -DLVDDGGFIPTDLNMVSIKYDNVYAVGDANSMT---VPKLGY-----LAVMTGRIAAQH 330

Query: 352 IKALLSAQTHTYDYLPY 368
           +   L   T    Y P 
Sbjct: 331 LANRLGVPTKVDKYYPT 347

>4fk1_A Putative thioredoxin reductase; structural genomics, niaid, national institute of allergy AN infectious diseases; HET: MSE FAD; 2.40A {Bacillus anthracis} PDB: 4fk1_C* Length = 304

 Score = 87.2 bits (217), Expect = 3e-19
 Identities = 47/308 (15%), Positives = 86/308 (27%), Gaps = 70/308 (22%)

Query: 55  VIVGGG----NAAGYAARTFVEHGMADGRLCIVSKEAYAPYERPALTKGYLFPLDKKPAR 110
            ++G G    NA+    R       A  ++ +          R  +T+            
Sbjct: 10  AVIGAGPAGLNASLVLGR-------ARKQIALFDNNTN----RNRVTQNS---------- 48

Query: 111 LPGFHTCVG-SGGE-----RQTPEWYKEKGIEMIYQDPVTSIDIEKQ---TLITNSGKLL 161
             GF T  G    E           Y        Y+  V  I  +      ++T      
Sbjct: 49  -HGFITRDGIKPEEFKEIGLNEVMKY---PSVHYYEKTVVMITKQSTGLFEIVTKDHTKY 104

Query: 162 KYGSLIVATGCTASRFPEKIGGYLPGV--HYIRDVA-----DADALISSLEKAKKVVVVG 214
               +++ATG     FP      +P V  +Y + +      D         K + ++++ 
Sbjct: 105 LAERVLLATGMQE-EFPS-----IPNVREYYGKSLFSCPYCDGW-----ELKDQPLIIIS 153

Query: 215 GGYIG-MEVAAAAVGWKLDTT----------RYEQLYQQNGVKFVKGASIKNLEAGSDGR 263
                 + +      W  D                      +  +  + I+ L+ G  G 
Sbjct: 154 ENEDHTLHMTKLVYNWSTDLVIATNGNELSQTIMDELSNKNIPVITES-IRTLQ-GEGGY 211

Query: 264 VAAVKLEDGSTIDADTIVIGIGAKPTVSPFERVGLN-SSVGGIQVDGQFRTRMPGIFAIG 322
           +  V+   G  I+     I           E++G    S G   +D   RT    I+  G
Sbjct: 212 LKKVEFHSGLRIERAGGFIVPTFFRPNQFIEQLGCELQSNGTFVIDDFGRTSEKNIYLAG 271

Query: 323 DVAAFPLK 330
           +       
Sbjct: 272 ETTTQGPS 279

>1mo9_A ORF3; nucleotide binding motifs, nucleotide binding domain, oxidor; HET: FAD KPC; 1.65A {Xanthobacter autotrophicus} SCOP: c.3.1.5 c.3.1.5 d.87.1.1 PDB: 1mok_A* 2c3c_A* 2c3d_A* 3q6j_A* Length = 523

 Score = 89.3 bits (222), Expect = 3e-19
 Identities = 44/197 (22%), Positives = 83/197 (42%), Gaps = 32/197 (16%)

Query: 157 SGKLLKYGSLIVATGCTASRFPEKIGGYLPGVHYIRDVADADALISSLEK--AKKVVVVG 214
           +GK+ K  +LI+A G             +PGV+       A  +   L+      VVVVG
Sbjct: 169 AGKVFKAKNLILAVGAGPGTLD------VPGVNAKGVFDHATLVEE-LDYEPGSTVVVVG 221

Query: 215 GGYIGMEVAA--AAVGWK------LDT----------TRYEQLYQQNGVKFVKGASIKNL 256
           G    +E      A G +       +                  ++ G++ + G+++  +
Sbjct: 222 GSKTAVEYGCFFNATGRRTVMLVRTEPLKLIKDNETRAYVLDRMKEQGMEIISGSNVTRI 281

Query: 257 EAGSDGRVAAVKLEDG---STIDADTIVIGIGAKPTVSPF-ERVGLN-SSVGGIQVDGQF 311
           E  ++GRV AV          I+ D + +G+G +P  +   + +GL+    G + V+   
Sbjct: 282 EEDANGRVQAVVAMTPNGEMRIETDFVFLGLGEQPRSAELAKILGLDLGPKGEVLVNEYL 341

Query: 312 RTRMPGIFAIGDVAAFP 328
           +T +P ++A+GD+   P
Sbjct: 342 QTSVPNVYAVGDLIGGP 358

>3dgz_A Thioredoxin reductase 2; oxidoreductase, rossmann, flavoprotein, FAD, mitochondrion, redox-active center, selenium, selenocysteine, transit PEPT; HET: FAD NA7; 2.25A {Mus musculus} PDB: 1zkq_A* 1zdl_A* Length = 488

 Score = 87.2 bits (217), Expect = 1e-18
 Identities = 47/190 (24%), Positives = 75/190 (39%), Gaps = 46/190 (24%)

Query: 167 IVATGCTASRFPEKIGGYLPGVHYIRDVADADALISS-----LEKA-KKVVVVGGGYIGM 220
           ++ATG       +     + G          +  I+S     L+++  K +VVG  Y+ +
Sbjct: 152 VIATGGRPRYPTQ-----VKG--------ALEYGITSDDIFWLKESPGKTLVVGASYVAL 198

Query: 221 EVAAAAVGWKLDTT-----------------RYEQLYQQNGVKFVKGASIKNLEAGSDGR 263
           E A    G  LDTT                    +  + +G +F+KG    +++     +
Sbjct: 199 ECAGFLTGIGLDTTVMMRSIPLRGFDQQMSSLVTEHMESHGTQFLKGCVPSHIKKLPTNQ 258

Query: 264 VAAVKLEDGS-----TIDADTIVIGIGAKPTVSPF--ERVG--LNSSVGGIQVDGQFRTR 314
           +  V  ED +     T   DT++  IG  P       E+ G   N     I VD Q  T 
Sbjct: 259 LQ-VTWEDHASGKEDTGTFDTVLWAIGRVPETRTLNLEKAGISTNPKNQKIIVDAQEATS 317

Query: 315 MPGIFAIGDV 324
           +P I+AIGDV
Sbjct: 318 VPHIYAIGDV 327

>3dgh_A TRXR-1, thioredoxin reductase 1, mitochondrial; oxidoreductase, rossmann, flavoprotein, alternative initiati mitochondrion, NADP; HET: FAD; 1.75A {Drosophila melanogaster} PDB: 2nvk_X* 3dh9_A* Length = 483

 Score = 87.2 bits (217), Expect = 1e-18
 Identities = 37/148 (25%), Positives = 61/148 (41%), Gaps = 28/148 (18%)

Query: 203 SLEKA-KKVVVVGGGYIGMEVAA--AAVGWKLDTT-----------------RYEQLYQQ 242
           SL++   K +VVG GYIG+E A     +G   + T                       ++
Sbjct: 182 SLDREPGKTLVVGAGYIGLECAGFLKGLG--YEPTVMVRSIVLRGFDQQMAELVAASMEE 239

Query: 243 NGVKFVKGASIKNLEAGSDGRVAA----VKLEDGSTIDADTIVIGIGAKPTVSPF--ERV 296
            G+ F++     ++E   DG++      V+  + S    DT++  IG K  V        
Sbjct: 240 RGIPFLRKTVPLSVEKQDDGKLLVKYKNVETGEESEDVYDTVLWAIGRKGLVDDLNLPNA 299

Query: 297 GLNSSVGGIQVDGQFRTRMPGIFAIGDV 324
           G+      I VD Q  T +  I+A+GD+
Sbjct: 300 GVTVQKDKIPVDSQEATNVANIYAVGDI 327

>2zbw_A Thioredoxin reductase; redox protein, oxidoreductase, structural genomics, NPPSFA, project on protein structural and functional analyses; HET: FAD; 2.10A {Thermus thermophilus} Length = 335

 Score = 85.3 bits (212), Expect = 2e-18
 Identities = 44/228 (19%), Positives = 85/228 (37%), Gaps = 43/228 (18%)

Query: 134 GIEMIYQDPVTSIDIEKQ--TLITNSGKLLKYGSLIVATGCTASRFPEKIGGYLPG---- 187
                  +   +++ E     + T+ G      ++I+A G  A   P +IG   PG    
Sbjct: 79  NPVYSLGERAETLEREGDLFKVTTSQGNAYTAKAVIIAAGVGAFE-PRRIG--APGEREF 135

Query: 188 ----VHYIRDVADADALISSLEKAKKVVVVGGG------YIGMEVAAAAV---------- 227
               V+Y   V           + K+V++VGGG       + +   A  +          
Sbjct: 136 EGRGVYYA--VKSKAEF-----QGKRVLIVGGGDSAVDWALNLLDTARRITLIHRRPQFR 188

Query: 228 GWKLDTTRYEQLYQQNGVKFVKGASIKNLEAGSDGRVAAVKLEDGST-----IDADTIVI 282
             +       + +++  ++ +    ++ +E   D RV    +    T     ++ D ++I
Sbjct: 189 AHEASVKELMKAHEEGRLEVLTPYELRRVEG--DERVRWAVVFHNQTQEELALEVDAVLI 246

Query: 283 GIGAKPTVSPFERVGLNSSVGGIQVDGQFRTRMPGIFAIGDVAAFPLK 330
             G    + P    GL      I+VD    T +PG++A GD+  +P K
Sbjct: 247 LAGYITKLGPLANWGLALEKNKIKVDTTMATSIPGVYACGDIVTYPGK 294

>3dk9_A Grase, GR, glutathione reductase; flavoenzyme, nicotinamide, acetylation, alternative initiation, cytoplasm, FAD, flavoprotein, mitochondrion, NADP; HET: SO4 FAD; 0.95A {Homo sapiens} PDB: 1bwc_A* 1gra_A* 1gre_A* 1grf_A* 1grh_A* 1grb_A* 2gh5_A* 1gsn_A* 3dk4_A* 3dk8_A* 3djj_A* 3grs_A* 3sqp_A* 4gr1_A* 2aaq_A* 1dnc_A* 1grg_A* 1grt_A* 1xan_A* 5grt_A* ... Length = 478

 Score = 86.4 bits (215), Expect = 2e-18
 Identities = 49/208 (23%), Positives = 84/208 (40%), Gaps = 52/208 (25%)

Query: 154 ITNSGKLLKYGSLIVATGCTASRFPEKIGGYLPGVHYIRDVADADALISS-----LEKA- 207
           I  SGK      +++ATG   S  P +    +PG             I+S     LE+  
Sbjct: 140 IEVSGKKYTAPHILIATGGMPST-PHESQ--IPGASLG---------ITSDGFFQLEELP 187

Query: 208 KKVVVVGGGYIGMEVAA--AAVGWKLDTT---RYEQL---------------YQQNGVKF 247
            + V+VG GYI +E+A   +A+G    T+   R++++                +  GV+ 
Sbjct: 188 GRSVIVGAGYIAVEMAGILSALG--SKTSLMIRHDKVLRSFDSMISTNCTEELENAGVEV 245

Query: 248 VKGASIKNLEAGSDGRVAAV-------KLEDGSTIDADTIVIGIGAKPTVSPF--ERVG- 297
           +K + +K ++    G   ++               D D ++  IG  P        ++G 
Sbjct: 246 LKFSQVKEVKKTLSGLEVSMVTAVPGRLPVMTMIPDVDCLLWAIGRVPNTKDLSLNKLGI 305

Query: 298 -LNSSVGGIQVDGQFRTRMPGIFAIGDV 324
             +   G I VD    T + GI+A+GDV
Sbjct: 306 QTDDK-GHIIVDEFQNTNVKGIYAVGDV 332

>3sx6_A Sulfide-quinone reductase, putative; sulfide:quinone oxidoreductase, Cys356Ala variant, integral membrane protein; HET: FAD LMT DCQ; 1.80A {Acidithiobacillus ferrooxidans} PDB: 3t0k_A* 3szc_A* 3sz0_A* 3t2z_A* 3t31_A* 3sy4_A* 3syi_A* 3sxi_A* 3t14_A* 3t2k_A* 3szw_A* 3szf_A* 3kpg_A* 3kpi_A* 3t2y_A* 3kpk_A* Length = 437

 Score = 85.2 bits (211), Expect = 4e-18
 Identities = 53/329 (16%), Positives = 90/329 (27%), Gaps = 81/329 (24%)

Query: 55  VIVGGGNAAGYAARTFVEHGMADGRLCIVSKEAYAPYERPALTKGYLFPLDKKPARLPGF 114
           VI+G G     AA    E   +   + ++S   Y     P+                   
Sbjct: 8   VILGAGTGGMPAAYEMKEALGSGHEVTLISANDYF-QFVPSNPW---------------- 50

Query: 115 HTCVGSGG------ERQTPEWYKEKGIEMIYQDPVTSIDIEKQTLITNSGKLLKYGSLIV 168
              VG G             + + KGI  I       ID E Q +    G  + Y  L++
Sbjct: 51  ---VGVGWKERDDIAFPIRHYVERKGIHFI-AQSAEQIDAEAQNITLADGNTVHYDYLMI 106

Query: 169 ATGCTASRFPEKIGG---YLPGVHYIRDVADADALISSLEKAKK----VVVVGGGYIGME 221
           ATG   +   E + G   +   V  I  V  A+   +  +   +    +V+         
Sbjct: 107 ATGPKLA--FENVPGSDPHEGPVQSICTVDHAERAFAEYQALLREPGPIVIGAMAGASCF 164

Query: 222 VAAAAVGWKLDT-----------------------------------TRYEQLYQQNGVK 246
             A      + +                                       +  ++ G++
Sbjct: 165 GPAYEYAMIVASDLKKRGMRDKIPSFTFITSEPYIGHLGIQGVGDSKGILTKGLKEEGIE 224

Query: 247 FVKGASIKNLEAGSDGRVAAVKLEDGS-----TIDADTIVIGIGAKPTVSPFERVGLNSS 301
                 +  +E   +        E G       +     ++    K  V     V    +
Sbjct: 225 AYTNCKVTKVED--NKMYVTQVDEKGETIKEMVLPVKFGMMIPAFKG-VPAVAGVEGLCN 281

Query: 302 VGG-IQVDGQFR-TRMPGIFAIGDVAAFP 328
            GG + VD   R  +   IFA G   A P
Sbjct: 282 PGGFVLVDEHQRSKKYANIFAAGIAIAIP 310

>3sx6_A Sulfide-quinone reductase, putative; sulfide:quinone oxidoreductase, Cys356Ala variant, integral membrane protein; HET: FAD LMT DCQ; 1.80A {Acidithiobacillus ferrooxidans} PDB: 3t0k_A* 3szc_A* 3sz0_A* 3t2z_A* 3t31_A* 3sy4_A* 3syi_A* 3sxi_A* 3t14_A* 3t2k_A* 3szw_A* 3szf_A* 3kpg_A* 3kpi_A* 3t2y_A* 3kpk_A* Length = 437

 Score = 42.4 bits (100), Expect = 3e-04
 Identities = 23/117 (19%), Positives = 43/117 (36%), Gaps = 37/117 (31%)

Query: 204 LEKAKKVVVVGGGYIGMEVAAA-----------------------------AVGW-KLDT 233
           +  +  VV++G G  GM  A                                VGW + D 
Sbjct: 1   MRGSAHVVILGAGTGGMPAAYEMKEALGSGHEVTLISANDYFQFVPSNPWVGVGWKERDD 60

Query: 234 TRY--EQLYQQNGVKFVKGASIKNLEAGSDGRVAAVKLEDGSTIDADTIVIGIGAKP 288
             +      ++ G+ F+   S + ++A  + +   + L DG+T+  D ++I  G K 
Sbjct: 61  IAFPIRHYVERKGIHFIA-QSAEQIDA--EAQ--NITLADGNTVHYDYLMIATGPKL 112

>2yqu_A 2-oxoglutarate dehydrogenase E3 component; lipoamide dehydrogenase, 2-oxoglutarate dehydrogenase comple pyruvate dehydrogenase complex; HET: FAD; 1.70A {Thermus thermophilus} PDB: 2eq7_A* Length = 455

 Score = 84.9 bits (211), Expect = 6e-18
 Identities = 52/211 (24%), Positives = 95/211 (45%), Gaps = 42/211 (19%)

Query: 145 SIDIEKQTLITNSGKLLKYGSLIVATGCTASRFPEKIGGYLPGVHYIRDVADADALISS- 203
               E++ L+  +G+ L+   +++ATG              P         D + +++S 
Sbjct: 112 RFLSERKVLVEETGEELEARYILIATGSAPLI--------PPWAQV-----DYERVVTST 158

Query: 204 ----LEKA-KKVVVVGGGYIGMEVAA--AAVGWK------LDT----------TRYEQLY 240
                 +  K+++VVGGG IG+E+      +G +      +D              E+++
Sbjct: 159 EALSFPEVPKRLIVVGGGVIGLELGVVWHRLGAEVIVLEYMDRILPTMDLEVSRAAERVF 218

Query: 241 QQNGVKFVKGASIKNLEAGSDGRVAAVKLEDGSTIDADTIVIGIGAKPTVSP--FERVGL 298
           ++ G+    G  +  +   + G  A V+LE G  ++AD +++ +G +P       E  GL
Sbjct: 219 KKQGLTIRTGVRVTAVVPEAKG--ARVELEGGEVLEADRVLVAVGRRPYTEGLSLENAGL 276

Query: 299 NSSVGG-IQVDGQFRTRMPGIFAIGDVAAFP 328
           ++   G I VD   RTR+P I+AIGDV   P
Sbjct: 277 STDERGRIPVDEHLRTRVPHIYAIGDVVRGP 307

>3ab1_A Ferredoxin--NADP reductase; oxidoreductase, electron transport, FAD, flavoprotein; HET: FAD; 2.39A {Chlorobaculum tepidum} Length = 360

 Score = 83.5 bits (207), Expect = 9e-18
 Identities = 47/216 (21%), Positives = 82/216 (37%), Gaps = 39/216 (18%)

Query: 146 IDIEKQ-----TLITNSGKLLKYGSLIVATGCTA--SRFPEKIGGY----LPGVHYIRDV 194
               K         TN+G + +  ++++A G  A   R   ++G         V+Y   V
Sbjct: 98  TKYTKLDDGTFETRTNTGNVYRSRAVLIAAGLGAFEPRKLPQLGNIDHLTGSSVYYA--V 155

Query: 195 ADADALISSLEKAKKVVVVGGGYIGMEVAAAAVGWKLDTT----------------RYEQ 238
              +       K K+VV+VGGG   ++     +      T                  E+
Sbjct: 156 KSVEDF-----KGKRVVIVGGGDSALDWTVGLIKNAASVTLVHRGHEFQGHGKTAHEVER 210

Query: 239 LYQQNGVKFVKGASIKNLEAGSDGRVAAVKLEDGS----TIDADTIVIGIGAKPTVSPFE 294
                 +       + ++E  S+G +  V L        T++AD ++I IG K  + P  
Sbjct: 211 ARANGTIDVYLETEVASIE-ESNGVLTRVHLRSSDGSKWTVEADRLLILIGFKSNLGPLA 269

Query: 295 RVGLNSSVGGIQVDGQFRTRMPGIFAIGDVAAFPLK 330
           R  L      + VD   +T + G++A GD+A +P K
Sbjct: 270 RWDLELYENALVVDSHMKTSVDGLYAAGDIAYYPGK 305

>1lvl_A Dihydrolipoamide dehydrogenase; oxidoreductase; HET: FAD NAD; 2.45A {Pseudomonas putida} SCOP: c.3.1.5 c.3.1.5 d.87.1.1 Length = 458

 Score = 82.6 bits (205), Expect = 4e-17
 Identities = 46/194 (23%), Positives = 86/194 (44%), Gaps = 34/194 (17%)

Query: 157 SGKLLKYGSLIVATGCTASRFPEKIGGYLPGVHYIRDVADA-DALISSLEKA-KKVVVVG 214
            G+ ++   L++ATG ++          LP +     V  + +AL  + +   + +VVVG
Sbjct: 129 DGQRIQCEHLLLATGSSSVE--------LPMLPLGGPVISSTEAL--APKALPQHLVVVG 178

Query: 215 GGYIGMEVAA--AAVGWKLD----------------TTRYEQLYQQNGVKFVKGASIKNL 256
           GGYIG+E+      +G ++                 T    +  ++ G+    G S++  
Sbjct: 179 GGYIGLELGIAYRKLGAQVSVVEARERILPTYDSELTAPVAESLKKLGIALHLGHSVEGY 238

Query: 257 EAGSDGRVAAVKLEDGSTIDADTIVIGIGAKPTVSPF--ERVGLNSSVGGIQVDGQFRTR 314
           E G    +A         ++AD +++ +G +P    F  E + L  +   I +D + +T 
Sbjct: 239 ENG--CLLANDGKGGQLRLEADRVLVAVGRRPRTKGFNLECLDLKMNGAAIAIDERCQTS 296

Query: 315 MPGIFAIGDVAAFP 328
           M  ++AIGDVA  P
Sbjct: 297 MHNVWAIGDVAGEP 310

>2a8x_A Dihydrolipoyl dehydrogenase, E3 component of alpha; lipoamide dehydrogenase, pyruvate dehydrogenase, alpha keto acid dehydrogenase; HET: FAD; 2.40A {Mycobacterium tuberculosis} PDB: 3ii4_A* Length = 464

 Score = 82.2 bits (204), Expect = 4e-17
 Identities = 43/208 (20%), Positives = 78/208 (37%), Gaps = 38/208 (18%)

Query: 143 VTSIDIEKQTLITNSGKLLKYGSLIVATGCTASRFPEKIGGYLPGVHYIRDVADADALIS 202
           V   D   +++  ++         I+ATG +           +PG     +V   +  I 
Sbjct: 123 VDLNDGGTESVTFDN--------AIIATGSSTRL--------VPGTSLSANVVTYEEQIL 166

Query: 203 SLEKAKKVVVVGGGYIGMEVAA--AAVGWK------LDT----------TRYEQLYQQNG 244
           S E  K +++ G G IGME        G        L               E+ +++ G
Sbjct: 167 SRELPKSIIIAGAGAIGMEFGYVLKNYGVDVTIVEFLPRALPNEDADVSKEIEKQFKKLG 226

Query: 245 VKFVKGASIKNLEAGSDGRVAAVKLEDGS-TIDADTIVIGIGAKPTVSPF--ERVGLN-S 300
           V  +    ++++  G       V  +  +  + A+ ++  IG  P V  +  ++ G+  +
Sbjct: 227 VTILTATKVESIADGGSQVTVTVTKDGVAQELKAEKVLQAIGFAPNVEGYGLDKAGVALT 286

Query: 301 SVGGIQVDGQFRTRMPGIFAIGDVAAFP 328
               I VD   RT +  I+AIGDV    
Sbjct: 287 DRKAIGVDDYMRTNVGHIYAIGDVNGLL 314

>3qfa_A Thioredoxin reductase 1, cytoplasmic; protein-protein complex, rossmann fold, HO pyridine nucleotide disulfide oxidoreductase, electron TRAN oxidoreductase; HET: FAD; 2.20A {Homo sapiens} PDB: 3qfb_A* 2j3n_A* 2zzc_A* 2zzb_A* 2zz0_A* 2cfy_A* 1h6v_A* 3ean_A* 3eao_A* Length = 519

 Score = 82.6 bits (205), Expect = 5e-17
 Identities = 48/195 (24%), Positives = 83/195 (42%), Gaps = 54/195 (27%)

Query: 167 IVATGCTASRFPEKIGGYLPGVHYIRDVADADALISS-----LEKA-KKVVVVGGGYIGM 220
           ++ATG             +PG        D +  ISS     L     K +VVG  Y+ +
Sbjct: 178 LIATGERPRY-LG-----IPG--------DKEYCISSDDLFSLPYCPGKTLVVGASYVAL 223

Query: 221 EVAA--AAVGWKLDTT-----------------RYEQLYQQNGVKFVKGA---SIKNLEA 258
           E A   A +G  LD T                 +  +  +++G+KF++      ++ +EA
Sbjct: 224 ECAGFLAGIG--LDVTVMVRSILLRGFDQDMANKIGEHMEEHGIKFIRQFVPIKVEQIEA 281

Query: 259 GSDGRVAAVKLEDGST-----IDADTIVIGIGAKPTVSPF--ERVG--LNSSVGGIQVDG 309
           G+ GR+  V  +  ++      + +T+++ IG          E VG  +N   G I V  
Sbjct: 282 GTPGRLR-VVAQSTNSEEIIEGEYNTVMLAIGRDACTRKIGLETVGVKINEKTGKIPVTD 340

Query: 310 QFRTRMPGIFAIGDV 324
           + +T +P I+AIGD+
Sbjct: 341 EEQTNVPYIYAIGDI 355

>3lzw_A Ferredoxin--NADP reductase 2; ferredoxin reductase, FAD, NADPH, flavoprotein, oxidor; HET: FAD NAP; 1.80A {Bacillus subtilis} PDB: 3lzx_A* Length = 332

 Score = 79.2 bits (196), Expect = 2e-16
 Identities = 41/221 (18%), Positives = 75/221 (33%), Gaps = 57/221 (25%)

Query: 147 DIEKQT----LITNSGKLLKYGSLIVATGCTASRFPEKIGGYLPG--------VHYIRDV 194
            +EKQ      +  + +     ++I+  G  A + P K+   L          +HY   V
Sbjct: 92  SVEKQADGVFKLVTNEETHYSKTVIITAGNGAFK-PRKLE--LENAEQYEGKNLHYF--V 146

Query: 195 ADADALISSLEKAKKVVVVGGGYIGMEVAAAAVGWKLDTTRY------------------ 236
            D           ++V ++GGG        +AV W L                       
Sbjct: 147 DDLQKF-----AGRRVAILGGG-------DSAVDWALMLEPIAKEVSIIHRRDKFRAHEH 194

Query: 237 --EQLYQQNGVKFVKGASIKNLEAGSDGRVAAVKLEDG-----STIDADTIVIGIGAKPT 289
             E L   + V  +       L    + ++  + LE+        ++ D +++  G   +
Sbjct: 195 SVENL-HASKVNVLTPFVPAELIG--EDKIEQLVLEEVKGDRKEILEIDDLIVNYGFVSS 251

Query: 290 VSPFERVGLNSSVGGIQVDGQFRTRMPGIFAIGDVAAFPLK 330
           + P +  GL+     I V     T + G FA GD+  +  K
Sbjct: 252 LGPIKNWGLDIEKNSIVVKSTMETNIEGFFAAGDICTYEGK 292

>1ojt_A Surface protein; redox-active center, glycolysis, oxidoreductase, NAD, flavop FAD, P64K; HET: FAD; 2.75A {Neisseria meningitidis} SCOP: c.3.1.5 c.3.1.5 d.87.1.1 PDB: 1bhy_A* Length = 482

 Score = 79.1 bits (196), Expect = 5e-16
 Identities = 42/217 (19%), Positives = 86/217 (39%), Gaps = 45/217 (20%)

Query: 143 VTSIDIEKQTLITNSGK--LLKYGSLIVATGCTASRFP-----EKIGGYLPGVHYIRDVA 195
           V+    +       +G+  ++ + + I+A G   ++ P      +I            + 
Sbjct: 127 VSLTAGDAYEQAAPTGEKKIVAFKNCIIAAGSRVTKLPFIPEDPRI------------ID 174

Query: 196 DADALISSLEKA-KKVVVVGGGYIGMEVAA--AAVGWKLD----------------TTRY 236
            + AL  +L++   K++++GGG IG+E+    + +G +LD                   +
Sbjct: 175 SSGAL--ALKEVPGKLLIIGGGIIGLEMGTVYSTLGSRLDVVEMMDGLMQGADRDLVKVW 232

Query: 237 EQLYQQNGVKFVKGASIKNLEAGSDGRVAAVKLEDGS--TIDADTIVIGIGAKPTVSP-- 292
           ++  +      +       +E   DG     +  +        D +++  G  P      
Sbjct: 233 QKQNEYRFDNIMVNTKTVAVEPKEDGVYVTFEGANAPKEPQRYDAVLVAAGRAPNGKLIS 292

Query: 293 FERVGLN-SSVGGIQVDGQFRTRMPGIFAIGDVAAFP 328
            E+ G+  +  G I+VD Q RT +P I+AIGD+   P
Sbjct: 293 AEKAGVAVTDRGFIEVDKQMRTNVPHIYAIGDIVGQP 329

>2eq6_A Pyruvate dehydrogenase complex, dihydrolipoamide dehydrogenase E3 component; oxidoreductase, homodimer, structural genomics, NPPSFA; HET: FAD; 1.60A {Thermus thermophilus} PDB: 2eq8_A* 2eq9_A* Length = 464

 Score = 79.1 bits (196), Expect = 6e-16
 Identities = 42/203 (20%), Positives = 78/203 (38%), Gaps = 45/203 (22%)

Query: 157 SGKLLKYGSLIVATGCTASRFP-----EKIGGYLPGVHYIRDVADADALISSLEKA--KK 209
            G+     SLI+ATG            E +                 AL   +E+   K+
Sbjct: 126 GGERYGAKSLILATGSEPLELKGFPFGEDV------------WDSTRAL--KVEEGLPKR 171

Query: 210 VVVVGGGYIGMEVAA--AAVGWKLD----------------TTRYEQLYQQNGVKFVKGA 251
           ++V+GGG +G+E+      +G ++                      +  ++ G++     
Sbjct: 172 LLVIGGGAVGLELGQVYRRLGAEVTLIEYMPEILPQGDPETAALLRRALEKEGIRVRTKT 231

Query: 252 SIKNLEAGSDGRVAAVKLEDG---STIDADTIVIGIGAKPTVSP--FERVGLNSSVGG-I 305
                E   DG    ++  +G     +  D +++ +G KP       E+ G+     G I
Sbjct: 232 KAVGYEKKKDGLHVRLEPAEGGEGEEVVVDKVLVAVGRKPRTEGLGLEKAGVKVDERGFI 291

Query: 306 QVDGQFRTRMPGIFAIGDVAAFP 328
           +V+ +  T +PG++AIGD A  P
Sbjct: 292 RVNARMETSVPGVYAIGDAARPP 314

>1ebd_A E3BD, dihydrolipoamide dehydrogenase; redox-active center, glycolysis, oxidoreductase; HET: FAD; 2.60A {Geobacillus stearothermophilus} SCOP: c.3.1.5 c.3.1.5 d.87.1.1 Length = 455

 Score = 78.7 bits (195), Expect = 7e-16
 Identities = 57/203 (28%), Positives = 89/203 (43%), Gaps = 46/203 (22%)

Query: 156 NSGKLLKYGSLIVATGCTASRFP-----EKIGGYLPGVHYIRDVADADALISSLEKA-KK 209
           +S +   + + I+ATG      P      +I            +    AL  +L +  K 
Sbjct: 127 DSAQTYTFKNAIIATGSRPIELPNFKFSNRI------------LDSTGAL--NLGEVPKS 172

Query: 210 VVVVGGGYIGMEVAA--AAVGWKLD----------------TTRYEQLYQQNGVKFVKGA 251
           +VV+GGGYIG+E+    A  G K+                     ++  ++ GV+ V  A
Sbjct: 173 LVVIGGGYIGIELGTAYANFGTKVTILEGAGEILSGFEKQMAAIIKKRLKKKGVEVVTNA 232

Query: 252 SIKNLEAGSDGRVAAVKLEDG---STIDADTIVIGIGAKPTVSP--FERVGLN-SSVGGI 305
             K  E   DG    V  E      TIDAD +++ +G +P       E++G+  ++ G I
Sbjct: 233 LAKGAEEREDG--VTVTYEANGETKTIDADYVLVTVGRRPNTDELGLEQIGIKMTNRGLI 290

Query: 306 QVDGQFRTRMPGIFAIGDVAAFP 328
           +VD Q RT +P IFAIGD+   P
Sbjct: 291 EVDQQCRTSVPNIFAIGDIVPGP 313

>1zk7_A HGII, reductase, mercuric reductase; mercuric ION reductase, oxidoreductase; HET: FAD; 1.60A {Pseudomonas aeruginosa} PDB: 1zx9_A* Length = 467

 Score = 77.9 bits (193), Expect = 1e-15
 Identities = 34/198 (17%), Positives = 74/198 (37%), Gaps = 32/198 (16%)

Query: 152 TLITNSGKLLKYGSLIVATGCTASRFPEKIGGYLPGVHYIRDVADADALISSLEKA-KKV 210
            L     +++ +   +VATG + +  P      +PG+         +AL  + +   +++
Sbjct: 128 RLNEGGERVVMFDRCLVATGASPAVPP------IPGLKESPYWTSTEAL--ASDTIPERL 179

Query: 211 VVVGGGYIGME--------------VAAAAVGWKLD---TTRYEQLYQQNGVKFVKGASI 253
            V+G   + +E              +A   + ++ D          ++  G++ ++    
Sbjct: 180 AVIGSSVVALELAQAFARLGSKVTVLARNTLFFREDPAIGEAVTAAFRAEGIEVLEHTQA 239

Query: 254 KNLEAGSDGRVAAVKLEDGSTIDADTIVIGIGAKPTVSPF--ERVGLN-SSVGGIQVDGQ 310
             +       V  +    G  + AD +++  G  P       +  G+  ++ G I +D  
Sbjct: 240 SQVAHMDGEFV--LTTTHG-ELRADKLLVATGRTPNTRSLALDAAGVTVNAQGAIVIDQG 296

Query: 311 FRTRMPGIFAIGDVAAFP 328
            RT  P I+A GD    P
Sbjct: 297 MRTSNPNIYAAGDCTDQP 314

>1dxl_A Dihydrolipoamide dehydrogenase; oxidoreductase, multienzyme complex protein, pyruvate dehydrogenase complex, glycine decarboxylase complex; HET: FAD; 3.15A {Pisum sativum} SCOP: c.3.1.5 c.3.1.5 d.87.1.1 Length = 470

 Score = 77.6 bits (192), Expect = 2e-15
 Identities = 52/216 (24%), Positives = 93/216 (43%), Gaps = 51/216 (23%)

Query: 143 VTSIDIEKQTLITNSGKLLKYGSLIVATGCTASRFPEKIGGYLPGVHYIRDVADADALIS 202
           V +I+ E   +            +I+ATG             LPGV       D   ++S
Sbjct: 128 VDTIEGENTVVKGKH--------IIIATGSDVKS--------LPGVTI-----DEKKIVS 166

Query: 203 S-----LEKA-KKVVVVGGGYIGMEVAA--AAVGWK------LDT----------TRYEQ 238
           S     L +  KK+VV+G GYIG+E+ +    +G +                    ++++
Sbjct: 167 STGALALSEIPKKLVVIGAGYIGLEMGSVWGRIGSEVTVVEFASEIVPTMDAEIRKQFQR 226

Query: 239 LYQQNGVKFVKGASIKNLEAGSDGRVAAVKLEDG---STIDADTIVIGIGAKPTVSP--F 293
             ++ G+KF     +  ++   DG    V+   G   + I+AD +++  G  P  S    
Sbjct: 227 SLEKQGMKFKLKTKVVGVDTSGDGVKLTVEPSAGGEQTIIEADVVLVSAGRTPFTSGLNL 286

Query: 294 ERVGLNSSVGG-IQVDGQFRTRMPGIFAIGDVAAFP 328
           +++G+ +   G I V+ +F T + G++AIGDV   P
Sbjct: 287 DKIGVETDKLGRILVNERFSTNVSGVYAIGDVIPGP 322

>3urh_A Dihydrolipoyl dehydrogenase; PSI-biology, structural genomics, protein structure initiati YORK structural genomics research consortium; HET: FAD; 1.90A {Sinorhizobium meliloti} Length = 491

 Score = 76.8 bits (190), Expect = 3e-15
 Identities = 58/215 (26%), Positives = 96/215 (44%), Gaps = 47/215 (21%)

Query: 143 VTSIDIEKQTLITNSGKLLKYGSLIVATGCTASRFPEKIGGYLPGVHYIRD----VADAD 198
           VT+   E+Q L   +        +++ATG   +         +PGV    D    V+   
Sbjct: 147 VTNEKGEEQVLEAKN--------VVIATGSDVAG--------IPGVEVAFDEKTIVSSTG 190

Query: 199 ALISSLEKA-KKVVVVGGGYIGMEVAA--AAVGWK------LDT----------TRYEQL 239
           AL  +LEK    ++VVGGG IG+E+ +  A +G K      LDT           + +++
Sbjct: 191 AL--ALEKVPASMIVVGGGVIGLELGSVWARLGAKVTVVEFLDTILGGMDGEVAKQLQRM 248

Query: 240 YQQNGVKFVKGASIKNLEAGSDGRVAAVKLEDGS---TIDADTIVIGIGAKPTVSP--FE 294
             + G+ F  GA +       DG     +   G    T+DA+ ++I  G KP+       
Sbjct: 249 LTKQGIDFKLGAKVTGAVKSGDGAKVTFEPVKGGEATTLDAEVVLIATGRKPSTDGLGLA 308

Query: 295 RVGLNSSVGG-IQVDGQFRTRMPGIFAIGDVAAFP 328
           + G+     G +++D  F+T + G++AIGDV   P
Sbjct: 309 KAGVVLDSRGRVEIDRHFQTSIAGVYAIGDVVRGP 343

>2x8g_A Thioredoxin glutathione reductase; redox-active center, detoxification pathway, oxidoreductase, flavoprotein; HET: FAD PG4; 1.90A {Schistosoma mansoni} PDB: 2x8c_A* 2x8h_A* 2x99_A* 3h4k_A* 2v6o_A* Length = 598

 Score = 76.2 bits (188), Expect = 5e-15
 Identities = 33/155 (21%), Positives = 56/155 (36%), Gaps = 34/155 (21%)

Query: 203 SLEKA-KKVVVVGGGYIGMEVAAAAVGWKLDTT-----------------RYEQLYQQNG 244
           SL     K +V+G  Y+ +E A        D T                 +     + +G
Sbjct: 281 SLPYFPGKTLVIGASYVALECAGFLASLGGDVTVMVRSILLRGFDQQMAEKVGDYMENHG 340

Query: 245 VKFVKGASIKN--------LEAGSDGR-VAAVKLEDGST--IDADTIVIGIGAKPTVSPF 293
           VKF K               E    G  +      DG     + +T++  +G +P +S  
Sbjct: 341 VKFAKLCVPDEIKQLKVVDTENNKPGLLLVKGHYTDGKKFEEEFETVIFAVGREPQLSKV 400

Query: 294 --ERVG--LNSSVGGIQVDGQFRTRMPGIFAIGDV 324
             E VG  L+ + G +      +T +  ++AIGD+
Sbjct: 401 LCETVGVKLDKN-GRVVCTDDEQTTVSNVYAIGDI 434

>1v59_A Dihydrolipoamide dehydrogenase; 2-oxoacid dehydroganese complex, pyruvate dehydrogenase complex; HET: FAD NAD; 2.20A {Saccharomyces cerevisiae} SCOP: c.3.1.5 c.3.1.5 d.87.1.1 PDB: 1jeh_A* Length = 478

 Score = 75.2 bits (186), Expect = 9e-15
 Identities = 50/215 (23%), Positives = 95/215 (44%), Gaps = 49/215 (22%)

Query: 143 VTSIDIEKQTLITNSGKLLKYGSLIVATGCTASRFP------EKIGGYLPGVHYIRDVAD 196
           VT +D  + T       +L   ++IVATG   + FP      EKI            V+ 
Sbjct: 128 VTPVDGLEGT--VKEDHILDVKNIIVATGSEVTPFPGIEIDEEKI------------VSS 173

Query: 197 ADALISSLEKA-KKVVVVGGGYIGMEVAA--AAVGWK------LDT----------TRYE 237
             AL  SL++  K++ ++GGG IG+E+ +  + +G K                      +
Sbjct: 174 TGAL--SLKEIPKRLTIIGGGIIGLEMGSVYSRLGSKVTVVEFQPQIGASMDGEVAKATQ 231

Query: 238 QLYQQNGVKFVKGASIKNLEAGSDGRVAAVKLEDGS-----TIDADTIVIGIGAKPTVSP 292
           +  ++ G+ F     + + +   D  V  + +ED        ++A+ +++ +G +P ++ 
Sbjct: 232 KFLKKQGLDFKLSTKVISAKRNDDKNVVEIVVEDTKTNKQENLEAEVLLVAVGRRPYIAG 291

Query: 293 F--ERVGLN-SSVGGIQVDGQFRTRMPGIFAIGDV 324
              E++GL     G + +D QF ++ P I  +GDV
Sbjct: 292 LGAEKIGLEVDKRGRLVIDDQFNSKFPHIKVVGDV 326

>1hyu_A AHPF, alkyl hydroperoxide reductase subunit F; thiol-thiolate hydrogen bond, nucleotide binding fold, thior reductase, thioredoxin; HET: FAD; 2.00A {Salmonella typhimurium} SCOP: c.3.1.5 c.3.1.5 c.47.1.2 c.47.1.2 PDB: 1zyn_A 1zyp_A Length = 521

 Score = 75.4 bits (186), Expect = 1e-14
 Identities = 51/228 (22%), Positives = 85/228 (37%), Gaps = 44/228 (19%)

Query: 134 GIEMIYQDPVTSIDIEKQ-----TLITNSGKLLKYGSLIVATGCTASRFPEKIGGYLP-- 186
            +++I     + +           + T SG +LK  S+I+ATG         +   +P  
Sbjct: 281 DVDVIDSQSASKLVPAATEGGLHQIETASGAVLKARSIIIATGAK----WRNMN--VPGE 334

Query: 187 ------GVHYIRDVADADALISSLEKAKKVVVVGGGYIGMEVAA--AAVGWKL------D 232
                 GV Y       D     L K K+V V+GGG  G+E A   A +   +       
Sbjct: 335 DQYRTKGVTY---CPHCDG---PLFKGKRVAVIGGGNSGVEAAIDLAGIVEHVTLLEFAP 388

Query: 233 TTRYEQLYQQ-----NGVKFVKGASIKNLEAGSDGRVAAVKLEDGST-----IDADTIVI 282
             + +Q+ Q        V  +  A    ++ G   +V  ++  D  +     +    I +
Sbjct: 389 EMKADQVLQDKVRSLKNVDIILNAQTTEVK-GDGSKVVGLEYRDRVSGDIHSVALAGIFV 447

Query: 283 GIGAKPTVSPFERVGLNSSVGGIQVDGQFRTRMPGIFAIGDVAAFPLK 330
            IG  P     E     + +G I +D +  T + G+FA GD    P K
Sbjct: 448 QIGLLPNTHWLEGALERNRMGEIIIDAKCETSVKGVFAAGDCTTVPYK 495

>3cty_A Thioredoxin reductase; FAD, oxidoreductase, flavin, flavoprotein; HET: FAD; 2.35A {Thermoplasma acidophilum} Length = 319

 Score = 73.7 bits (182), Expect = 1e-14
 Identities = 51/224 (22%), Positives = 82/224 (36%), Gaps = 41/224 (18%)

Query: 134 GIEMIYQDPVTSIDIEKQT-LITNSGKLLKYGSLIVATGCTASRFPEKIGGYLP------ 186
                  + V SI   +    I  +        +I+ TG T     + +G  +       
Sbjct: 86  AKIREGVE-VRSIKKTQGGFDIETNDDTYHAKYVIITTGTT----HKHLG--VKGESEYF 138

Query: 187 --GVHYIRDVADADALISSLEKAKKVVVVGGGYIGMEVAA--AAVGWK------LDTTRY 236
             G  Y    +  D     L K K+VV +GGG  G   A   +           +     
Sbjct: 139 GKGTSY---CSTCDG---YLFKGKRVVTIGGGNSGAIAAISMSEYVKNVTIIEYMPKYMC 192

Query: 237 EQLYQQ----NGVKFVKGASIKNLEAGSDGRVAAVKLEDGST-----IDADTIVIGIGAK 287
           E  Y Q      + ++  A +  +  G   +V  VK +D +T     I+ D + I +G  
Sbjct: 193 ENAYVQEIKKRNIPYIMNAQVTEIV-GDGKKVTGVKYKDRTTGEEKLIETDGVFIYVGLI 251

Query: 288 PTVSPFERVGLNSSVGG-IQVDGQFRTRMPGIFAIGDVAAFPLK 330
           P  S  +  G+     G I VD + RT +PG++A GDV +    
Sbjct: 252 PQTSFLKDSGVKLDERGYIVVDSRQRTSVPGVYAAGDVTSGNFA 295

>2qae_A Lipoamide, dihydrolipoyl dehydrogenase; FAD-cystine-oxidoreductase, homodimer; HET: FAD; 1.90A {Trypanosoma cruzi} Length = 468

 Score = 74.5 bits (184), Expect = 1e-14
 Identities = 45/212 (21%), Positives = 89/212 (41%), Gaps = 51/212 (24%)

Query: 143 VTSIDIEKQTLITNSGKLLKYGSLIVATGCTASRFPEKIGGYLPGVHYIRDVADADALIS 202
           V  +D +++ L T           I+ATG   +         LP + +     D   ++S
Sbjct: 125 VNGLDGKQEMLETKK--------TIIATGSEPTE--------LPFLPF-----DEKVVLS 163

Query: 203 S-----LEKA-KKVVVVGGGYIGMEVAA--AAVGWKL---------------DTTRYEQ- 238
           S     L +  K +VV+GGG IG+E+ +  A +G ++               D T     
Sbjct: 164 STGALALPRVPKTMVVIGGGVIGLELGSVWARLGAEVTVVEFAPRCAPTLDEDVTNALVG 223

Query: 239 -LYQQNGVKFVKGASIKNLEAGSDGRVAAVKLEDGS--TIDADTIVIGIGAKPTVSPF-- 293
            L +   +KF+    +       D     V+ ++G   T+  + +++ +G +P       
Sbjct: 224 ALAKNEKMKFMTSTKVVGGTNNGDSVSLEVEGKNGKRETVTCEALLVSVGRRPFTGGLGL 283

Query: 294 ERVGLN-SSVGGIQVDGQFRTRMPGIFAIGDV 324
           +++ +  +  G +++   F T +P ++AIGDV
Sbjct: 284 DKINVAKNERGFVKIGDHFETSIPDVYAIGDV 315

>3lad_A Dihydrolipoamide dehydrogenase; oxidoreductase; HET: FAD; 2.20A {Azotobacter vinelandii} SCOP: c.3.1.5 c.3.1.5 d.87.1.1 PDB: 1lpf_A* Length = 476

 Score = 74.1 bits (183), Expect = 2e-14
 Identities = 46/214 (21%), Positives = 82/214 (38%), Gaps = 49/214 (22%)

Query: 143 VTSIDIEKQTLITNSGKLLKYGSLIVATGCTASRFPEKIGGYLPGVHYIRDVADADALIS 202
           VT+ D   Q L T +        +I+A+G             +P         D D ++ 
Sbjct: 131 VTAADGSSQVLDTEN--------VILASGSKPVE--------IPPAPV-----DQDVIVD 169

Query: 203 S-----LEKA-KKVVVVGGGYIGMEVAA--AAVGWKLD----------------TTRYEQ 238
           S      +    K+ V+G G IG+E+ +  A +G ++                     ++
Sbjct: 170 STGALDFQNVPGKLGVIGAGVIGLELGSVWARLGAEVTVLEAMDKFLPAVDEQVAKEAQK 229

Query: 239 LYQQNGVKFVKGASIKNLEAGSDG-RVAAVKLEDGSTIDADTIVIGIGAKPTVSP--FER 295
           +  + G+K + GA +   E  +    V  V  E   +   D +++ +G +P  +      
Sbjct: 230 ILTKQGLKILLGARVTGTEVKNKQVTVKFVDAEGEKSQAFDKLIVAVGRRPVTTDLLAAD 289

Query: 296 VGLNSSVGG-IQVDGQFRTRMPGIFAIGDVAAFP 328
            G+     G I VD    T +PG++AIGDV    
Sbjct: 290 SGVTLDERGFIYVDDYCATSVPGVYAIGDVVRGA 323

>1zmd_A Dihydrolipoyl dehydrogenase; lipoamide dehydrogenase, pyruvate dehydrogenase, alpha- ketoglutarate dehydrogenase; HET: FAD NAI; 2.08A {Homo sapiens} PDB: 1zmc_A* 2f5z_A* 1zy8_A* 3rnm_A* Length = 474

 Score = 73.7 bits (182), Expect = 3e-14
 Identities = 55/219 (25%), Positives = 95/219 (43%), Gaps = 55/219 (25%)

Query: 143 VTSIDIEKQTLITNSGKLLKYGSLIVATGCTASRFPEKIGGYLPGVHYIRDVADADALIS 202
            T  D   Q + T +        +++ATG   +          PG+       D D ++S
Sbjct: 129 ATKADGGTQVIDTKN--------ILIATGSEVTP--------FPGITI-----DEDTIVS 167

Query: 203 S-----LEKA-KKVVVVGGGYIGMEVAA--AAVGWKLD-----------------TTRYE 237
           S     L+K  +K+VV+G G IG+E+ +    +G  +                  +  ++
Sbjct: 168 STGALSLKKVPEKMVVIGAGVIGVELGSVWQRLGADVTAVEFLGHVGGVGIDMEISKNFQ 227

Query: 238 QLYQQNGVKFVKGASIKNLEAGSDGRVAAVKLEDGS-----TIDADTIVIGIGAKPTVSP 292
           ++ Q+ G KF     +      SDG++  V +E  S      I  D +++ IG +P    
Sbjct: 228 RILQKQGFKFKLNTKVTGATKKSDGKID-VSIEAASGGKAEVITCDVLLVCIGRRPFTKN 286

Query: 293 --FERVGLN-SSVGGIQVDGQFRTRMPGIFAIGDVAAFP 328
              E +G+     G I V+ +F+T++P I+AIGDV A P
Sbjct: 287 LGLEELGIELDPRGRIPVNTRFQTKIPNIYAIGDVVAGP 325

>1fl2_A Alkyl hydroperoxide reductase subunit F; reactive oxygen, FAD, disulphi oxidoreductase, oxidoreductase; HET: FAD; 1.90A {Escherichia coli} SCOP: c.3.1.5 c.3.1.5 Length = 310

 Score = 71.4 bits (176), Expect = 6e-14
 Identities = 53/235 (22%), Positives = 85/235 (36%), Gaps = 58/235 (24%)

Query: 134 GIEMIYQDP---VTSIDIEKQ--TLITNSGKLLKYGSLIVATGCTASRFPEKIGGYLP-- 186
            +++I       +    +E     + T SG +LK  S+IVATG         +   +P  
Sbjct: 70  DVDVIDSQSASKLIPAAVEGGLHQIETASGAVLKARSIIVATGAK----WRNMN--VPGE 123

Query: 187 ------GVHYIRDVADADALISSLEKAKKVVVVGGGYIGMEVAAAAVGWKLDTTRY---- 236
                 GV Y       D     L K K+V V+GGG  G+E A       +D        
Sbjct: 124 DQYRTKGVTY---CPHCDG---PLFKGKRVAVIGGGNSGVEAA-------IDLAGIVEHV 170

Query: 237 ----------------EQLYQQNGVKFVKGASIKNLEAGSDGRVAAVKLEDGST-----I 275
                           ++L     V  +  A    ++ G   +V  ++  D  +     I
Sbjct: 171 TLLEFAPEMKADQVLQDKLRSLKNVDIILNAQTTEVK-GDGSKVVGLEYRDRVSGDIHNI 229

Query: 276 DADTIVIGIGAKPTVSPFERVGLNSSVGGIQVDGQFRTRMPGIFAIGDVAAFPLK 330
           +   I + IG  P  +  E     + +G I +D +  T + G+FA GD    P K
Sbjct: 230 ELAGIFVQIGLLPNTNWLEGAVERNRMGEIIIDAKCETNVKGVFAAGDCTTVPYK 284

>3fbs_A Oxidoreductase; structural genomics, PSI2, MCSG, protein STR initiative, midwest center for structural genomics; HET: FAD; 2.15A {Agrobacterium tumefaciens} Length = 297

 Score = 70.6 bits (174), Expect = 1e-13
 Identities = 44/219 (20%), Positives = 66/219 (30%), Gaps = 49/219 (22%)

Query: 134 GIEMIYQDPVTSIDIEKQ--TLITNSGKLLKYGSLIVATGCTASRFPEKIGGYLP----G 187
            I  +    VT          +  + G+    G LI+A G T    PE I G        
Sbjct: 71  TIHWVEGR-VTDAKGSFGEFIVEIDGGRRETAGRLILAMGVTD-ELPE-IAGLRERWGSA 127

Query: 188 VHY--------IRDVADADALISSLEKAKKVVVVGGGYIGMEVAAAAVGWKLDTT----- 234
           V +        +                 K+ V+    + +  A     W   T      
Sbjct: 128 VFHCPYCHGYELDQ--------------GKIGVIAASPMAIHHALMLPDWGETTFFTNGI 173

Query: 235 ---RYEQLYQQNGVK-FVKGASIKNLEAGSDGRVAAVKLEDGSTIDADTIVIGIGAKPTV 290
                +Q          V+   I+ +   +D     V L DG +I    +      + TV
Sbjct: 174 VEPDADQHALLAARGVRVETTRIREIAGHAD-----VVLADGRSIALAGLFTQPKLRITV 228

Query: 291 SPFERVGL----NSSVGGIQVDGQFRTRMPGIFAIGDVA 325
              E++G           I  D   +T   GIFA GDVA
Sbjct: 229 DWIEKLGCAVEEGPMGSTIVTDPMKQTTARGIFACGDVA 267

>3ic9_A Dihydrolipoamide dehydrogenase; APC62701, colwellia psychrer 34H, structural genomics, PSI-2; HET: FAD; 2.15A {Colwellia psychrerythraea} Length = 492

 Score = 69.9 bits (172), Expect = 4e-13
 Identities = 37/216 (17%), Positives = 66/216 (30%), Gaps = 54/216 (25%)

Query: 148 IEKQTLITNSGKLLKYGSLIVATGCTASRFPEKIGGYLPGVHYIRDVADADALISS---- 203
           +++ TL  +    +    +++ATG   +        Y   +           L+++    
Sbjct: 122 LDEHTLQVDDHSQVIAKRIVIATGSRPN--------YPEFLAA-----AGSRLLTNDNLF 168

Query: 204 -LEKA-KKVVVVGGGYIGMEVAAAAVGWK--------------------LDTTRYEQLYQ 241
            L    K V V G G IG+E+  A                          +  RY +   
Sbjct: 169 ELNDLPKSVAVFGPGVIGLELGQA---LSRLGVIVKVFGRSGSVANLQDEEMKRYAEKTF 225

Query: 242 QNGVKFVKGASIKNLEAGSDGRVAAVKLEDGS--TIDADTIVIGIGAKPTVSPFERVGL- 298
                F   A + +     D        + G   T     ++   G K  V   +++GL 
Sbjct: 226 NEEFYFDAKARVISTIEKEDAVEVIYFDKSGQKTTESFQYVLAATGRKANV---DKLGLE 282

Query: 299 NSSV-----GGIQVD-GQFRTRMPGIFAIGDVAAFP 328
           N+S+          D    +T +  IF  GD     
Sbjct: 283 NTSIELDKKNSPLFDELTLQTSVDHIFVAGDANNTL 318

>1gte_A Dihydropyrimidine dehydrogenase; electron transfer, flavin, iron-sulfur clusters, pyrimidine catabolism, 5-fluorouracil degradation, oxidoreductase; HET: FMN FAD; 1.65A {Sus scrofa} SCOP: a.1.2.2 c.1.4.1 c.3.1.1 c.4.1.1 d.58.1.5 PDB: 1gt8_A* 1gth_A* 1h7w_A* 1h7x_A* Length = 1025

 Score = 69.1 bits (169), Expect = 1e-12
 Identities = 52/318 (16%), Positives = 104/318 (32%), Gaps = 69/318 (21%)

Query: 128 EWYKEKGIEMIYQDPVTSIDIEKQTLITNSGKLLKYGSLIVATGCTASRF------PEKI 181
           E  K+ G+++I    ++  +I   TL         Y +  +  G    +         + 
Sbjct: 246 ELMKDLGVKIICGKSLSENEITLNTLKEEG-----YKAAFIGIGLPEPKTDDIFQGLTQD 300

Query: 182 GGYLPGVHYIRDVADADALISSLEKA------KKVVVVGGGYIGMEVAAAAVGWKLDTTR 235
            G+     ++  VA +         +        V+V+G G    + A +A+  +    R
Sbjct: 301 QGFYTSKDFLPLVAKSSKAGMCACHSPLPSIRGAVIVLGAGDTAFDCATSAL--RCGARR 358

Query: 236 YEQLY-----------------QQNGVKFVKGASIKNLEAGSDGRVAAVKLE-------- 270
              ++                 ++   +F+   S + +     GR+ AV+          
Sbjct: 359 VFLVFRKGFVNIRAVPEEVELAKEEKCEFLPFLSPRKVI-VKGGRIVAVQFVRTEQDETG 417

Query: 271 -----DGS--TIDADTIVIGIGAKPTVSP--FERVGLN-SSVGGIQVDGQ-FRTRMPGIF 319
                +     + AD ++   G+             +  +     +VD +  +T  P +F
Sbjct: 418 KWNEDEDQIVHLKADVVISAFGSVLRDPKVKEALSPIKFNRWDLPEVDPETMQTSEPWVF 477

Query: 320 AIGDVAAFPLKMYDRTAR--VEHVDHARQSAQ--HC-IKALLSAQTHTYDYLPYFYSRVF 374
           A GD+           A   VE V+  +Q++   H  I+A   A       LP FY+ V 
Sbjct: 478 AGGDIV--------GMANTTVESVNDGKQASWYIHKYIQAQYGASVSAKPELPLFYTPVD 529

Query: 375 EYEGSPRKVWWQFFGDNV 392
             + S      +F     
Sbjct: 530 LVDISVEMAGLKFINPFG 547

>3f8d_A Thioredoxin reductase (TRXB-3); redox protein, nucleotide binding, FAD, flavoprotein, oxidoreductase; HET: FAD; 1.40A {Sulfolobus solfataricus} PDB: 3f8p_A* 3f8r_A* Length = 323

 Score = 66.0 bits (162), Expect = 4e-12
 Identities = 55/218 (25%), Positives = 90/218 (41%), Gaps = 40/218 (18%)

Query: 134 GIEMIYQDPVTSIDIEKQ--TLITNSGKLLKYGSLIVATGCTASR--FP--EKIGGYLPG 187
            + ++  D V  I+       + T      K  S+I+  G    +   P  ++  G   G
Sbjct: 84  EVPVLL-DIVEKIENRGDEFVVKTKRKGEFKADSVILGIGVKRRKLGVPGEQEFAGR--G 140

Query: 188 VHYIRDVADADALISSLEKAKKVVVVGGGYIGMEVA------AAAVGWKL----DTTRYE 237
           + Y    + ADA    L K + V V+GGG   +E A      +  V   L    DT + +
Sbjct: 141 ISY---CSVADA---PLFKNRVVAVIGGGDSALEGAEILSSYSTKV--YLIHRRDTFKAQ 192

Query: 238 QLYQQ-----NGVKFVKGASIKNLEAGSDGRVAAVKLED-----GSTIDADTIVIGIGAK 287
            +Y +       V+FV  + +K  E   D  V  V +E+        ++ + + I IG  
Sbjct: 193 PIYVETVKKKPNVEFVLNSVVK--EIKGDKVVKQVVVENLKTGEIKELNVNGVFIEIGFD 250

Query: 288 PTVSPFERVGLNSSVGG-IQVDGQFRTRMPGIFAIGDV 324
           P     +  G+ +   G I+VD   RT +PG+FA GD 
Sbjct: 251 PPTDFAKSNGIETDTNGYIKVDEWMRTSVPGVFAAGDC 288

>2q0l_A TRXR, thioredoxin reductase; bacterial thiredoxin reductase, NADP+ B reduced izoalloxazine bending, oxidoreductase; HET: FAD NAP; 1.45A {Helicobacter pylori} PDB: 2q0k_A* 3ish_A* Length = 311

 Score = 62.9 bits (154), Expect = 4e-11
 Identities = 41/231 (17%), Positives = 82/231 (35%), Gaps = 59/231 (25%)

Query: 134 GIEMIYQDPVTSIDIEKQ--TLITNSGKLLKYGSLIVATGCTASR--FP--EKIGGYLPG 187
           G++      V  +  +     ++   GK  +  S+I+ATG +  R       +  G   G
Sbjct: 73  GLKHEM-TAVQRVSKKDSHFVILAEDGKTFEAKSVIIATGGSPKRTGIKGESEYWGK--G 129

Query: 188 VHY--------IRDVADADALISSLEKAKKVVVVGGGYIGMEVA------AAAVGWKL-- 231
           V           ++              K+V V+GGG   +E A         V   L  
Sbjct: 130 VSTCATCDGFFYKN--------------KEVAVLGGGDTAVEEAIYLANICKKV--YLIH 173

Query: 232 --DTTRYEQLYQQ----NG-VKFVKGASIKNLEAGSDGRVAAVKLED-----GSTIDADT 279
             D  R   +  +    N  ++F+    ++ ++ G    V+++ +++        +    
Sbjct: 174 RRDGFRCAPITLEHAKNNDKIEFLTPYVVEEIK-GDASGVSSLSIKNTATNEKRELVVPG 232

Query: 280 IVIGIGAKPTVSPFERVGLNSSV-----GGIQVDGQFRTRMPGIFAIGDVA 325
             I +G     +  ++   +        G I VD   +T + G+FA GD+ 
Sbjct: 233 FFIFVGYDVNNAVLKQEDNSMLCKCDEYGSIVVDFSMKTNVQGLFAAGDIR 283

>3r9u_A Thioredoxin reductase; structural genomics, center for structural genomics of infec diseases, csgid, thioredoxin-disulfide reductase, FAD; HET: FAD; 2.36A {Campylobacter jejuni} Length = 315

 Score = 57.1 bits (139), Expect = 3e-09
 Identities = 47/231 (20%), Positives = 81/231 (35%), Gaps = 59/231 (25%)

Query: 134 GIEMIYQDPVTSIDIEKQ---TLITNSGKLLKYGSLIVATGCTASR--FP--EKIGGYLP 186
           G++      V  I        T+    GK     ++IV TG    +  F   ++  G   
Sbjct: 76  GLKHEM-VGVEQILKNSDGSFTIKLEGGKTELAKAVIVCTGSAPKKAGFKGEDEFFGK-- 132

Query: 187 GVHY--------IRDVADADALISSLEKAKKVVVVGGGYIGMEVA------AAAVGWKL- 231
           GV           ++              K+V V+GGG   +E A       + +   L 
Sbjct: 133 GVSTCATCDGFFYKN--------------KEVAVLGGGDTALEEALYLANICSKI--YLI 176

Query: 232 ---DTTRYEQLYQQ----NG-VKFVKGASIKNLEAGSDGRVAAVKL--EDGST--IDADT 279
              D  R      +    N  ++ +  AS+  +  G    VA VK+  +DGS   ++   
Sbjct: 177 HRRDEFRAAPSTVEKVKKNEKIELITSASVDEVY-GDKMGVAGVKVKLKDGSIRDLNVPG 235

Query: 280 IVIGIGAKPTVSPFERVGLNSSV-----GGIQVDGQFRTRMPGIFAIGDVA 325
           I   +G        ++            G + VD + +T + G+FA GD+ 
Sbjct: 236 IFTFVGLNVRNEILKQDDSKFLCNMEEGGQVSVDLKMQTSVAGLFAAGDLR 286

>1fcd_A Flavocytochrome C sulfide dehydrogenase (flavin- binding subunit); electron transport(flavocytochrome); HET: FAD HEM; 2.53A {Allochromatium vinosum} SCOP: c.3.1.5 c.3.1.5 d.87.1.1 Length = 401

 Score = 57.5 bits (139), Expect = 3e-09
 Identities = 56/323 (17%), Positives = 93/323 (28%), Gaps = 84/323 (26%)

Query: 55  VIVGGGNAAGYAARTFVEHGMADGRLCIVSKEAYAPYERPALTKGYLFPLDKKPARLPGF 114
           V+VGGG     AA+           + ++                              +
Sbjct: 6   VVVGGGTGGATAAKYIKLAD-PSIEVTLIEPNTD-------------------------Y 39

Query: 115 HTCVGS----GGERQTPEWYKE------KGIEMIYQDPVTSIDIEKQTLITNSGKLLKYG 164
           +TC  S    GG+R+              GI+++  D  T ID +K+ + T  G    Y 
Sbjct: 40  YTCYLSNEVIGGDRKLESIKHGYDGLRAHGIQVV-HDSATGIDPDKKLVKTAGGAEFGYD 98

Query: 165 SLIVATGCTASRFPEKIGGYLP-----GVHYIRDVADADAL---ISSLEKAKKVVVVGGG 216
             +VA G       +KI GY         H  +       L   +  +     VV+    
Sbjct: 99  RCVVAPGIELI--YDKIEGYSEEAAAKLPHAWKAGEQTAILRKQLEDMADGGTVVIAPPA 156

Query: 217 --------------------------------YIGMEVAAAAVGWKLDTTRYEQLYQQNG 244
                                                 +  +   K     Y    +   
Sbjct: 157 APFRCPPGPYERASQVAYYLKAHKPMSKVIILDSSQTFSKQSQFSKGWERLYGFGTENAM 216

Query: 245 VKFVKGASIKNLEAGSDGRVAAVKLEDGSTIDADTIVIGIGAKPTVSPFERVGLNSSVGG 304
           +++  G     ++   DG    V+   G    AD I + I  +      +  GL +  G 
Sbjct: 217 IEWHPGPDSAVVKV--DGGEMMVETAFGDEFKADVINL-IPPQRAGKIAQIAGLTNDAGW 273

Query: 305 IQVDGQ-FR-TRMPGIFAIGDVA 325
             VD + F  +   GI  IGD +
Sbjct: 274 CPVDIKTFESSIHKGIHVIGDAS 296

>2q7v_A Thioredoxin reductase; rossman fold, FAD, flavoprotein, oxidoreductase, redox- active center; HET: FAD; 1.90A {Deinococcus radiodurans} Length = 325

 Score = 54.8 bits (133), Expect = 2e-08
 Identities = 51/230 (22%), Positives = 86/230 (37%), Gaps = 60/230 (26%)

Query: 134 GIEMIYQDPVTSIDIEKQ------TLITNSGKLLKYGSLIVATGCTASR--FP--EKIGG 183
           G ++   D V  +  +        T+   +G+  +  ++I+ATG    +   P  +   G
Sbjct: 79  GAKVEM-DEVQGVQHDATSHPYPFTVRGYNGEY-RAKAVILATGADPRKLGIPGEDNFWG 136

Query: 184 YLPGVHY--------IRDVADADALISSLEKAKKVVVVGGGYIGMEVA------AAAVGW 229
              GV           +               KKVVV+GGG   +E        A  V  
Sbjct: 137 K--GVSTCATCDGFFYKG--------------KKVVVIGGGDAAVEEGMFLTKFADEV-- 178

Query: 230 KL----DTTRYEQLYQQ----NG-VKFVKGASIKNLEAGSDGRVAAVKLED-----GSTI 275
            +    DT R  ++ Q     N  +KF+   +++  E      V+ VKL +      S +
Sbjct: 179 TVIHRRDTLRANKVAQARAFANPKMKFIWDTAVE--EIQGADSVSGVKLRNLKTGEVSEL 236

Query: 276 DADTIVIGIGAKPTVSPFERVGLNSSVGGIQVDGQFRTRMPGIFAIGDVA 325
             D + I IG  P  +  +        G + V  +  T +P +FA GDV+
Sbjct: 237 ATDGVFIFIGHVPNTAFVKDTVSLRDDGYVDVRDEIYTNIPMLFAAGDVS 286

>3k30_A Histamine dehydrogenase; 6-S-cysteinyl-FMN, ADP binding site, oxidoreductase; HET: FMN ADP; 2.70A {Pimelobacter simplex} Length = 690

 Score = 54.2 bits (131), Expect = 5e-08
 Identities = 44/233 (18%), Positives = 69/233 (29%), Gaps = 53/233 (22%)

Query: 124 RQTPEWY-----KEKGIEMIYQDPVTSIDIEKQTLITNSGKLLKYGSLIVATGCT--ASR 176
            +  E+      +   +E+  + P+T  DI +            +  +I ATG T     
Sbjct: 443 GRVKEYREAVLAELPNVEIYRESPMTGDDIVE----------FGFEHVITATGATWRTDG 492

Query: 177 FPEKIGGYLPGVHYIRDVADADALISSLEKAKKVVVVGGG--YIGMEVA----------- 223
                   LP    ++ +   D     L   KKVVV      Y+G  VA           
Sbjct: 493 VARFHTTALPIAEGMQVLGPDDLFAGRLPDGKKVVVYDDDHYYLGGVVAELLAQKGYEVS 552

Query: 224 ----AAAVGWKLDTTRYEQLYQQ----NGVKFVKGASIKNLEAGSDGRVAAVKLEDG--S 273
                A V    + T      Q+    NGV  V   +   + A   G V           
Sbjct: 553 IVTPGAQVSSWTNNTFEVNRIQRRLIENGVARVTDHA---VVAVGAGGVTVRDTYASIER 609

Query: 274 TIDADTIVIGIGAKPTVSPFERVGLNSSVGGIQVDGQFRTRMPGIFAIGDVAA 326
            ++ D +V+     P    +  +      G I            +  IGD  A
Sbjct: 610 ELECDAVVMVTARLPREELYLDLVARRDAGEI----------ASVRGIGDAWA 652

>2vdc_G Glutamate synthase [NADPH] small chain; oxidoreductase, amidotransferase, ammonia assimilation, iron, zymogen; HET: OMT FMN AKG FAD; 9.50A {Azospirillum brasilense} Length = 456

 Score = 51.4 bits (124), Expect = 3e-07
 Identities = 48/213 (22%), Positives = 77/213 (36%), Gaps = 51/213 (23%)

Query: 162 KYGSLIVATGCTASRFPEKIGGYLPGVHY--------IRDVADADALISSLE----KAKK 209
           K+ +++VATG   +R  +  G  L  +           +                   K 
Sbjct: 207 KHVAVLVATGVYKARDIKAPGSGLGNIVAALDYLTTSNKVSLGDTVEAYENGSLNAAGKH 266

Query: 210 VVVVGGGYIGMEVA-------AAAV------------GWKLDTTRYEQ-----LYQQNGV 245
           VVV+GGG   M+         A +V            G + +    E+     ++Q    
Sbjct: 267 VVVLGGGDTAMDCVRTAIRQGATSVKCLYRRDRKNMPGSQREVAHAEEEGVEFIWQAAPE 326

Query: 246 KF--------VKGASIKNLEAGSDGRVAAVKLEDGS--TIDADTIVIGIGAKPTVSP--F 293
            F        V+   I    A + GR     +E GS  T+ AD ++  +G +P   P  F
Sbjct: 327 GFTGDTVVTGVRAVRIHLGVADATGRQTPQVIE-GSEFTVQADLVIKALGFEPEDLPNAF 385

Query: 294 ERVGLNSSV-GGIQVD-GQFRTRMPGIFAIGDV 324
           +   L  +  G + VD     T M G+FA GD+
Sbjct: 386 DEPELKVTRWGTLLVDHRTKMTNMDGVFAAGDI 418

>2a87_A TRXR, TR, thioredoxin reductase; FAD, NAP, NMA, TLS, oxidoreduct structural genomics, PSI, protein structure initiative; HET: FAD NAP; 3.00A {Mycobacterium tuberculosis} Length = 335

 Score = 49.5 bits (119), Expect = 1e-06
 Identities = 47/220 (21%), Positives = 91/220 (41%), Gaps = 42/220 (19%)

Query: 134 GIEMIYQDPVTSIDIEKQ--TLITNSGKLLKYGSLIVATGCTASR--FP--EKIGGYLPG 187
           G ++  +D V S+ +     +++T  G+  +  ++I+A G  A     P  +++ G   G
Sbjct: 85  GADLRMED-VESVSLHGPLKSVVTADGQTHRARAVILAMGAAARYLQVPGEQELLGR--G 141

Query: 188 VHYIRDVADADALISSLEKAKKVVVVGGGYIGMEVA------AAAVGWKL----DTTRYE 237
           V      A  D       + + + V+GGG   ME A      A +V   L    D  R  
Sbjct: 142 VSS---CATCDGFFF---RDQDIAVIGGGDSAMEEATFLTRFARSV--TLVHRRDEFRAS 193

Query: 238 QLYQQ----NG-VKFVKGASIKNLEAGSDGRVAAVKLEDGST-----IDADTIVIGIGAK 287
           ++       N  ++F+   ++       D  V  +++ D +T     +    + + IG +
Sbjct: 194 KIMLDRARNNDKIRFLTNHTVV--AVDGDTTVTGLRVRDTNTGAETTLPVTGVFVAIGHE 251

Query: 288 PTVSPFE-RVGLNSSVGGIQVDGQF-RTRMPGIFAIGDVA 325
           P        + ++   G + V G+   T +PG+FA GD+ 
Sbjct: 252 PRSGLVREAIDVDPD-GYVLVQGRTTSTSLPGVFAAGDLV 290

>4a9w_A Monooxygenase; baeyer-villiger, FAD, oxidoreductase; HET: FAD; 2.72A {Stenotrophomonas maltophilia} Length = 357

 Score = 48.5 bits (116), Expect = 3e-06
 Identities = 34/228 (14%), Positives = 70/228 (30%), Gaps = 53/228 (23%)

Query: 143 VTSIDIEKQ--TLITNSGKLLKYGSLIVATGCTAS-RFPEKIGGYLPGVHYI--RDVADA 197
           V  +    +   ++   G+     ++I ATG       PE  G        +     +  
Sbjct: 99  VQRVSHFGERLRVVARDGRQWLARAVISATGTWGEAYTPEYQGLESFAGIQLHSAHYSTP 158

Query: 198 DALISSLEKAKKVVVVGGGYIGMEVAAA----------------------------AVGW 229
                      +V ++GGG  G ++ A                                 
Sbjct: 159 APF-----AGMRVAIIGGGNSGAQILAEVSTVAETTWITQHEPAFLADDVDGRVLFERAT 213

Query: 230 KLDTTRYEQLYQQNGVKFVKGASIKN--LEAGSDGRVAA-----------VKLEDGSTID 276
           +    + E               +    L+A + G +AA           ++  DG+   
Sbjct: 214 ERWKAQQEGREPDLPPGGFGDIVMVPPVLDARARGVLAAVPPPARFSPTGMQWADGTERA 273

Query: 277 ADTIVIGIGAKPTVSPFERVGLNSSVGGIQVD--GQFRTRMPGIFAIG 322
            D ++   G +P +S  + + L +  G ++VD  G     +P ++ +G
Sbjct: 274 FDAVIWCTGFRPALSHLKGLDLVTPQGQVEVDGSGLRALAVPSVWLLG 321

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221

 Score = 47.5 bits (112), Expect = 8e-06
 Identities = 53/391 (13%), Positives = 102/391 (26%), Gaps = 128/391 (32%)

Query: 91  YERPALTKG----------------YLF-PLDKKPARLPGFHTCVGSGGERQTPEWYKEK 133
             +  L+K                  LF  L  K          V     R   ++    
Sbjct: 41  MPKSILSKEEIDHIIMSKDAVSGTLRLFWTLLSKQEE--MVQKFVE-EVLRINYKFLMSP 97

Query: 134 GIEMIYQDP--VTSIDIEKQTLITNSGKLL-KYGSLIVATGCTASRFPEKIGGYLPGVHY 190
            I+   + P  +T + IE++  + N  ++  KY           SR  +           
Sbjct: 98  -IKTEQRQPSMMTRMYIEQRDRLYNDNQVFAKY---------NVSR-LQP-------YLK 139

Query: 191 IRDVADADALISSLEKAKKVVVVGGGYIGMEVAAAAVG--------------W----KLD 232
           +R      AL   L  AK V++ G    G    A  V               W      +
Sbjct: 140 LRQ-----AL-LELRPAKNVLIDGVLGSGKTWVALDVCLSYKVQCKMDFKIFWLNLKNCN 193

Query: 233 TTR-----YEQLYQQNGVKFVKGAS---------------IKNLEAGSDGRVAAVKLED- 271
           +        ++L  Q    +   +                ++ L          + L + 
Sbjct: 194 SPETVLEMLQKLLYQIDPNWTSRSDHSSNIKLRIHSIQAELRRLLKSKPYENCLLVLLNV 253

Query: 272 --GSTIDA-D----TIVI--------GIGA-----------KPTVSPFERVGLNSSVGGI 305
                 +A +     ++          + A             T++P E   L       
Sbjct: 254 QNAKAWNAFNLSCKILLTTRFKQVTDFLSAATTTHISLDHHSMTLTPDEVKSLLLKYLDC 313

Query: 306 QVDG---QFRTRMPGIFAIGDVAAFPLKMYDRTARVEHVDHARQSAQHCIKALLSAQTHT 362
           +      +  T  P    +  +A             +HV+  + +    I++ L+     
Sbjct: 314 RPQDLPREVLTTNP--RRLSIIAESIRDGLATWDNWKHVNCDKLT--TIIESSLNVLE-P 368

Query: 363 YDYLPYFYS-RVFEYEGS--PRKV----WWQ 386
            +Y   F    VF    +  P  +    W+ 
Sbjct: 369 AEYRKMFDRLSVFP-PSAHIPTILLSLIWFD 398

>1o94_A Tmadh, trimethylamine dehydrogenase; electron transport, protein complex; HET: FMN ADP AMP; 2.0A {Methylophilus methylotrophus} SCOP: c.1.4.1 c.3.1.1 c.4.1.1 PDB: 1djn_A* 1o95_A* 2tmd_A* 1djq_A* Length = 729

 Score = 46.6 bits (111), Expect = 2e-05
 Identities = 21/163 (12%), Positives = 45/163 (27%), Gaps = 41/163 (25%)

Query: 167 IVATGCTASRFPEKIGGY--LPGV-HYIRDVADA-DALISSLEKAKKVVVVGGG--YIGM 220
           I+ATG   +        +  +PG    + D       +    +  K+VV++     ++  
Sbjct: 484 IIATGARWNTDGTNCLTHDPIPGADASLPDQLTPEQVMDGKKKIGKRVVILNADTYFMAP 543

Query: 221 EVA---------------AAAVGWKLDTTRYEQLYQ---QNGVKFVKGASIKNLEAGS-- 260
            +A                    +   T  Y  + +   +  V+ +       +E G   
Sbjct: 544 SLAEKLATAGHEVTIVSGVHLANYMHFTLEYPNMMRRLHELHVEELGDHFCSRIEPGRME 603

Query: 261 ---------------DGRVAAVKLEDGSTIDADTIVIGIGAKP 288
                           G            I+ D++V+  G   
Sbjct: 604 IYNIWGDGSKRTYRGPGVSPRDANTSHRWIEFDSLVLVTGRHS 646

>1lqt_A FPRA; NADP+ derivative, oxidoreductase, structural G PSI, protein structure initiative, TB structural genomics consortium, TBSGC; HET: FAD ODP; 1.05A {Mycobacterium tuberculosis} SCOP: c.3.1.1 c.4.1.1 PDB: 1lqu_A* 2c7g_A* Length = 456

 Score = 45.2 bits (107), Expect = 3e-05
 Identities = 27/148 (18%), Positives = 44/148 (29%), Gaps = 7/148 (4%)

Query: 183 GYLPGVHYIRDVADADALISSLEKA-----KKVVVVGGGYIGMEVAAAAVGWKLDTTRYE 237
             L GV  + D A+ D +      A     K+ + V  GY   E                
Sbjct: 216 ADLDGVDVVIDPAELDGITDEDAAAVGKVCKQNIKVLRGYADREPRPGHRRMVFRFLTSP 275

Query: 238 QLYQQNGVKFVKGASIKNLEAGSDGRVAAVKLEDGSTIDADTIVIGIGAKPTVSPFERVG 297
              +              L +   GRVAA    +   + A  +V  +G +    P   + 
Sbjct: 276 IEIKGKRKVERIVLGRNELVSDGSGRVAAKDTGEREELPAQLVVRSVGYRG--VPTPGLP 333

Query: 298 LNSSVGGIQVDGQFRTRMPGIFAIGDVA 325
            +   G I   G      P  + +G + 
Sbjct: 334 FDDQSGTIPNVGGRINGSPNEYVVGWIK 361

>1ps9_A 2,4-dienoyl-COA reductase; iron-sulfur, TIM barrel, flavodoxin, flavin, electron transfer, hydride transfer, oxidoreductase; HET: FAD FMN NAP MDE; 2.20A {Escherichia coli} SCOP: c.1.4.1 c.3.1.1 c.4.1.1 Length = 671

 Score = 43.1 bits (102), Expect = 2e-04
 Identities = 47/307 (15%), Positives = 84/307 (27%), Gaps = 114/307 (37%)

Query: 48  ANENREFVIVGGGNAAGYAARTFVEHGM------ADGRLCIVSKEAYAPYERPALTKGYL 101
           A + +   +VG G A    A      G       A   +                  G  
Sbjct: 370 AVQKKNLAVVGAGPAGLAFAINAAARGHQVTLFDAHSEI------------------GGQ 411

Query: 102 FPLDKKPARLPGFHTCVGSGGERQTPEWY----KEKGIEMIYQDPVTSIDIEKQTLITNS 157
           F + K+      F+         +T  +Y    +  G+ +     VT+  ++        
Sbjct: 412 FNIAKQIPGKEEFY---------ETLRYYRRMIEVTGVTLKLNHTVTADQLQA------- 455

Query: 158 GKLLKYGSLIVATGCTASRFPEKIGGYLPGVHYIRDVADADALISSLEKAKKVVVVGGGY 217
                +   I+A+G      P      + G+ + + ++  D L        KV ++G G 
Sbjct: 456 -----FDETILASGIVPRTPP------IDGIDHPKVLSYLDVLRDKAPVGNKVAIIGCGG 504

Query: 218 IGMEVA-----------------------------------------------------A 224
           IG + A                                                     A
Sbjct: 505 IGFDTAMYLSQPGESTSQNIAGFCNEWGIDSSLQQAGGLSPQGMQIPRSPRQIVMLQRKA 564

Query: 225 AAVGWKLDTTRYEQLY---QQNGVKFVKGASIKNLEAGSDGRVAAVKLEDGSTIDADTIV 281
           +  G  L  T            GVK + G S + ++   D  +  V   +   +  D +V
Sbjct: 565 SKPGQGLGKTTGWIHRTTLLSRGVKMIPGVSYQKID---DDGLHVVINGETQVLAVDNVV 621

Query: 282 IGIGAKP 288
           I  G +P
Sbjct: 622 ICAGQEP 628

>1vdc_A NTR, NADPH dependent thioredoxin reductase; hypothetical protein, redox-active center, oxidoreductase, D oxidoreductase; HET: FAD; 2.50A {Arabidopsis thaliana} SCOP: c.3.1.5 c.3.1.5 PDB: 2whd_A* Length = 333

 Score = 40.6 bits (96), Expect = 6e-04
 Identities = 52/234 (22%), Positives = 85/234 (36%), Gaps = 62/234 (26%)

Query: 134 GIEMIYQDPVTSIDIEKQ--TLITNSGKLLKYGSLIVATGCTASR--FP-EKIGGYLPGV 188
           G  +  +  VT +D   +   L T+S  +L   ++I+A G  A R  F        + G 
Sbjct: 84  GTTIFTET-VTKVDFSSKPFKLFTDSKAILAD-AVILAIGAVAKRLSFVGSG---EVLGG 138

Query: 189 HYIRDV---ADADALISSLEKAKKVVVVGGGYIGMEVA------AAAVGWKL----DTTR 235
            + R +   A  D   + + + K + V+GGG   ME A       + V   +    D  R
Sbjct: 139 FWNRGISACAVCDGA-APIFRNKPLAVIGGGDSAMEEANFLTKYGSKV--YIIHRRDAFR 195

Query: 236 YEQLYQQ----------------------NGVKFVKGASIKNLEAGSDGRVAAVKLEDGS 273
             ++ QQ                           + G  +KN+  G             S
Sbjct: 196 ASKIMQQRALSNPKIDVIWNSSVVEAYGDGERDVLGGLKVKNVVTGDV-----------S 244

Query: 274 TIDADTIVIGIGAKPTVSPFE-RVGLNSSVGGIQVD-GQFRTRMPGIFAIGDVA 325
            +    +   IG +P     +  V L+S  G +    G  +T +PG+FA GDV 
Sbjct: 245 DLKVSGLFFAIGHEPATKFLDGGVELDSD-GYVVTKPGTTQTSVPGVFAAGDVQ 297

>1trb_A Thioredoxin reductase; oxidoreductase(flavoenzyme); HET: FAD; 2.00A {Escherichia coli} SCOP: c.3.1.5 c.3.1.5 PDB: 1cl0_A* 1f6m_A* 1tdf_A* 1tde_A* Length = 320

 Score = 40.6 bits (96), Expect = 7e-04
 Identities = 58/233 (24%), Positives = 92/233 (39%), Gaps = 61/233 (26%)

Query: 134 GIEMIYQDPVTSIDIEKQ--TLITNSGKLLKYGSLIVATGCTASR--FP--EKIGGYLPG 187
             E+I+ D +  +D++ +   L  ++G+     +LI+ATG +A     P  E   G   G
Sbjct: 76  ETEIIF-DHINKVDLQNRPFRLNGDNGEYTC-DALIIATGASARYLGLPSEEAFKGR--G 131

Query: 188 VHYIRDVADADALISS-------LEKAKKVVVVGGGYIGMEVA------AAAVGWKL--- 231
           V             S+         + +KV V+GGG   +E A      A+ V   L   
Sbjct: 132 V-------------SACATSDGFFYRNQKVAVIGGGNTAVEEALYLSNIASEV--HLIHR 176

Query: 232 -DTTRYEQLYQQNGVKFVKGASIK---NLEA----GSDGRVAAVKLEDGST------IDA 277
            D  R E++  +  +  V+  +I    N       G    V  V+L D         +D 
Sbjct: 177 RDGFRAEKILIKRLMDKVENGNIILHTNRTLEEVTGDQMGVTGVRLRDTQNSDNIESLDV 236

Query: 278 DTIVIGIGAKPTVSPFERVGLNSSVGGIQVDGQF-----RTRMPGIFAIGDVA 325
             + + IG  P  + FE   L    G I+V         +T +PG+FA GDV 
Sbjct: 237 AGLFVAIGHSPNTAIFEGQ-LELENGYIKVQSGIHGNATQTSIPGVFAAGDVM 288

>3itj_A Thioredoxin reductase 1; disulfide B flavoprotein, NADP, oxidoreductase, phosphoprotein, redox-A center; HET: FAD CIT; 2.40A {Saccharomyces cerevisiae} PDB: 3d8x_A* Length = 338

 Score = 40.6 bits (96), Expect = 8e-04
 Identities = 48/232 (20%), Positives = 83/232 (35%), Gaps = 60/232 (25%)

Query: 134 GIEMIYQDPVTSIDIEKQ-----TLITNSGKLLKYGSLIVATGCTASR--FP--EKIGGY 184
           G E+I +  V+ +D+  +     T      + +   ++I+ATG +A R   P  E     
Sbjct: 98  GTEIITET-VSKVDLSSKPFKLWTEFNEDAEPVTTDAIILATGASAKRMHLPGEETYWQK 156

Query: 185 LPGV----------HYIRDVADADALISSLEKAKKVVVVGGGYIGMEVA------AAAVG 228
             G+             R+              K + V+GGG    E A       + V 
Sbjct: 157 --GISACAVCDGAVPIFRN--------------KPLAVIGGGDSACEEAQFLTKYGSKV- 199

Query: 229 WKL----DTTRYEQLYQQNGVKFVKGASIKNLEA----GSDGRVAAVKLED-----GSTI 275
             +    D  R   + Q+   K  K   + N  A    G    + A+++++      + +
Sbjct: 200 -FMLVRKDHLRASTIMQKRAEKNEKIEILYNTVALEAKGDGKLLNALRIKNTKKNEETDL 258

Query: 276 DADTIVIGIGAKPTVSPFE-RVGLNSSVGGIQVD-GQFRTRMPGIFAIGDVA 325
               +   IG  P       +V  + + G I+   G   T +PG FA GDV 
Sbjct: 259 PVSGLFYAIGHTPATKIVAGQVDTDEA-GYIKTVPGSSLTSVPGFFAAGDVQ 309

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	469
3lxd_A	415	FAD-dependent pyridine nucleotide-disulphide oxido	100.0
3fg2_P	404	Putative rubredoxin reductase; ferredoxin reductas	100.0
3ef6_A	410	Toluene 1,2-dioxygenase system ferredoxin--NAD(+)	100.0
1q1r_A	431	Putidaredoxin reductase; glutathione reductase fol	100.0
3klj_A	385	NAD(FAD)-dependent dehydrogenase, NIRB-family (N-	100.0
2gqw_A	408	Ferredoxin reductase; flavoprotein, oxidoreductase	100.0
1m6i_A	493	Programmed cell death protein 8; apoptosis, AIF, o	100.0
4eqs_A	437	Coenzyme A disulfide reductase; oxidoreductase; HE	100.0
1xhc_A	367	NADH oxidase /nitrite reductase; southe collaborat	100.0
2bc0_A	490	NADH oxidase; flavoprotein, pyridine nucleotide di	100.0
2cdu_A	452	NADPH oxidase; flavoenzyme, oxidoreductase; HET: F	100.0
3oc4_A	452	Oxidoreductase, pyridine nucleotide-disulfide FAM;	100.0
3iwa_A	472	FAD-dependent pyridine nucleotide-disulphide oxido	100.0
3cgb_A	480	Pyridine nucleotide-disulfide oxidoreductase, CLA;	100.0
2v3a_A	384	Rubredoxin reductase; alkane degradation, NADH oxi	100.0
3kd9_A	449	Coenzyme A disulfide reductase; PSI-II, NYSGXRC, o	100.0
3ntd_A	565	FAD-dependent pyridine nucleotide-disulphide oxido	100.0
1nhp_A	447	NADH peroxidase; oxidoreductase (H2O2(A)); HET: FA	100.0
3ics_A	588	Coenzyme A-disulfide reductase; pyridine nucleotid	100.0
1mo9_A	523	ORF3; nucleotide binding motifs, nucleotide bindin	100.0
2qae_A	468	Lipoamide, dihydrolipoyl dehydrogenase; FAD-cystin	100.0
1xdi_A	499	RV3303C-LPDA; reductase, FAD, NAD, NADP, unkno fun	100.0
1zk7_A	467	HGII, reductase, mercuric reductase; mercuric ION	100.0
1zmd_A	474	Dihydrolipoyl dehydrogenase; lipoamide dehydrogena	100.0
2a8x_A	464	Dihydrolipoyl dehydrogenase, E3 component of alpha	100.0
1dxl_A	470	Dihydrolipoamide dehydrogenase; oxidoreductase, mu	100.0
1ojt_A	482	Surface protein; redox-active center, glycolysis,	100.0
2hqm_A	479	GR, grase, glutathione reductase; glutathione redu	100.0
1ebd_A	455	E3BD, dihydrolipoamide dehydrogenase; redox-active	100.0
1v59_A	478	Dihydrolipoamide dehydrogenase; 2-oxoacid dehydrog	100.0
2eq6_A	464	Pyruvate dehydrogenase complex, dihydrolipoamide d	100.0
3urh_A	491	Dihydrolipoyl dehydrogenase; PSI-biology, structur	100.0
2wpf_A	495	Trypanothione reductase; oxidoreductase, trypanoso	100.0
1onf_A	500	GR, grase, glutathione reductase; oxidoreductase;	100.0
1fec_A	490	Trypanothione reductase; redox-active center, oxid	100.0
3l8k_A	466	Dihydrolipoyl dehydrogenase; redox-active center,	100.0
1ges_A	450	Glutathione reductase; oxidoreductase(flavoenzyme)	100.0
3lad_A	476	Dihydrolipoamide dehydrogenase; oxidoreductase; HE	100.0
2r9z_A	463	Glutathione amide reductase; NAD, FAD, substrate s	100.0
2yqu_A	455	2-oxoglutarate dehydrogenase E3 component; lipoami	100.0
1lvl_A	458	Dihydrolipoamide dehydrogenase; oxidoreductase; HE	100.0
4dna_A	463	Probable glutathione reductase; structural genomic	100.0
3dk9_A	478	Grase, GR, glutathione reductase; flavoenzyme, nic	100.0
2vdc_G	456	Glutamate synthase [NADPH] small chain; oxidoreduc	100.0
3dgh_A	483	TRXR-1, thioredoxin reductase 1, mitochondrial; ox	100.0
4b1b_A	542	TRXR, thioredoxin reductase; oxidoreductase, FAD,	100.0
3dgz_A	488	Thioredoxin reductase 2; oxidoreductase, rossmann,	100.0
3ic9_A	492	Dihydrolipoamide dehydrogenase; APC62701, colwelli	100.0
3qfa_A	519	Thioredoxin reductase 1, cytoplasmic; protein-prot	100.0
3o0h_A	484	Glutathione reductase; ssgcid, structur genomics,	100.0
1gte_A	1025	Dihydropyrimidine dehydrogenase; electron transfer	100.0
2x8g_A	598	Thioredoxin glutathione reductase; redox-active ce	100.0
4g6h_A	502	Rotenone-insensitive NADH-ubiquinone oxidoreducta	100.0
4gcm_A	312	TRXR, thioredoxin reductase; FAD/NAD-linked reduct	100.0
3ab1_A	360	Ferredoxin--NADP reductase; oxidoreductase, electr	100.0
3lzw_A	332	Ferredoxin--NADP reductase 2; ferredoxin reductase	100.0
2zbw_A	335	Thioredoxin reductase; redox protein, oxidoreducta	100.0
4a5l_A	314	Thioredoxin reductase; oxidoreductase, redox metab	100.0
3f8d_A	323	Thioredoxin reductase (TRXB-3); redox protein, nuc	100.0
3fbs_A	297	Oxidoreductase; structural genomics, PSI2, MCSG, p	100.0
3cty_A	319	Thioredoxin reductase; FAD, oxidoreductase, flavin	100.0
3hyw_A	430	Sulfide-quinone reductase; monotopic membrane prot	100.0
2q7v_A	325	Thioredoxin reductase; rossman fold, FAD, flavopro	100.0
3vrd_B	401	FCCB subunit, flavocytochrome C flavin subunit; su	100.0
4fk1_A	304	Putative thioredoxin reductase; structural genomic	100.0
1fl2_A	310	Alkyl hydroperoxide reductase subunit F; reactive	100.0
2q0l_A	311	TRXR, thioredoxin reductase; bacterial thiredoxin	100.0
3r9u_A	315	Thioredoxin reductase; structural genomics, center	100.0
3itj_A	338	Thioredoxin reductase 1; disulfide B flavoprotein,	100.0
3sx6_A	437	Sulfide-quinone reductase, putative; sulfide:quino	100.0
1trb_A	320	Thioredoxin reductase; oxidoreductase(flavoenzyme)	100.0
1vdc_A	333	NTR, NADPH dependent thioredoxin reductase; hypoth	100.0
3h8l_A	409	NADH oxidase; membrane protein, complete form, ros	100.0
2a87_A	335	TRXR, TR, thioredoxin reductase; FAD, NAP, NMA, TL	100.0
1hyu_A	521	AHPF, alkyl hydroperoxide reductase subunit F; thi	100.0
4a9w_A	357	Monooxygenase; baeyer-villiger, FAD, oxidoreductas	100.0
3h28_A	430	Sulfide-quinone reductase; monotopic membrane prot	99.98
3d1c_A	369	Flavin-containing putative monooxygenase; NP_37310	99.97
1y56_A	493	Hypothetical protein PH1363; dehydrogenase, protei	99.97
1o94_A	729	Tmadh, trimethylamine dehydrogenase; electron tran	99.97
1cjc_A	460	Protein (adrenodoxin reductase); flavoenzyme, MAD	99.97
2gag_A	965	Heterotetrameric sarcosine oxidase alpha-subunit;	99.97
2xve_A	464	Flavin-containing monooxygenase; oxidoreductase; H	99.96
3k30_A	690	Histamine dehydrogenase; 6-S-cysteinyl-FMN, ADP bi	99.96
1lqt_A	456	FPRA; NADP+ derivative, oxidoreductase, structural	99.96
1ps9_A	671	2,4-dienoyl-COA reductase; iron-sulfur, TIM barrel	99.96
3s5w_A	463	L-ornithine 5-monooxygenase; class B flavin depend	99.95
2gv8_A	447	Monooxygenase; FMO, FAD, NADPH, cofactor complex,	99.95
3gwf_A	540	Cyclohexanone monooxygenase; flavoprotein biocatal	99.93
3uox_A	545	Otemo; baeyer-villiger monooxygenase, oxidoreducta	99.9
4ap3_A	549	Steroid monooxygenase; oxidoreductase, baeyer-vill	99.9
1w4x_A	542	Phenylacetone monooxygenase; baeyer-villiger, FAD;	99.89
2ywl_A	180	Thioredoxin reductase related protein; uncharacter	99.79
4b63_A	501	L-ornithine N5 monooxygenase; oxidoreductase, side	99.77
3fpz_A	326	Thiazole biosynthetic enzyme; FAD, mitochondrion,	99.62
2e5v_A	472	L-aspartate oxidase; archaea, oxidoreductase; HET:	99.54
2gqf_A	401	Hypothetical protein HI0933; structural genomics,	99.46
2cul_A	232	Glucose-inhibited division protein A-related PROT	99.42
2bry_A	497	NEDD9 interacting protein with calponin homology a	99.28
2ywl_A	180	Thioredoxin reductase related protein; uncharacter	99.16
1rp0_A	284	ARA6, thiazole biosynthetic enzyme; protein ligand	99.13
3k7m_X	431	6-hydroxy-L-nicotine oxidase; enantiomeric substra	99.12
3pl8_A	623	Pyranose 2-oxidase; substrate complex, H167A mutan	98.98
2cul_A	232	Glucose-inhibited division protein A-related PROT	98.92
4dgk_A	501	Phytoene dehydrogenase; the FAD/NAD(P)-binding ros	98.91
3v76_A	417	Flavoprotein; structural genomics, PSI-biology, NE	98.9
3alj_A	379	2-methyl-3-hydroxypyridine-5-carboxylic acid OXYG;	98.87
3ces_A	651	MNMG, tRNA uridine 5-carboxymethylaminomethyl modi	98.86
3nlc_A	549	Uncharacterized protein VP0956; FAD-binding protei	98.8
2i0z_A	447	NAD(FAD)-utilizing dehydrogenases; structural geno	98.78
1yvv_A	336	Amine oxidase, flavin-containing; oxidoreductase,	98.73
2e4g_A	550	Tryptophan halogenase; flavin-binding, rebeccamyci	98.72
2x3n_A	399	Probable FAD-dependent monooxygenase; oxidoreducta	98.71
1d4d_A	572	Flavocytochrome C fumarate reductase; oxidoreducta	98.71
3dme_A	369	Conserved exported protein; structural genomics, P	98.7
3nix_A	421	Flavoprotein/dehydrogenase; structural genomics, P	98.69
3fmw_A	570	Oxygenase; mithramycin, baeyer-villiger, flavin bi	98.69
2vou_A	397	2,6-dihydroxypyridine hydroxylase; oxidoreductase,	98.68
3i3l_A	591	Alkylhalidase CMLS; flavin-dependent halogenase, c	98.67
1s3e_A	520	Amine oxidase [flavin-containing] B; human monoami	98.67
3cgv_A	397	Geranylgeranyl reductase related protein; NP_39399	98.66
3qj4_A	342	Renalase; FAD/NAD(P)-binding rossmann fold superfa	98.65
2xdo_A	398	TETX2 protein; tetracycline degradation, tigecycli	98.65
2zxi_A	637	TRNA uridine 5-carboxymethylaminomethyl modificat	98.63
3ps9_A	676	TRNA 5-methylaminomethyl-2-thiouridine biosynthes	98.59
3ihg_A	535	RDME; flavoenzyme, anthracycline, polyketide biosy	98.58
1ryi_A	382	Glycine oxidase; flavoprotein, protein-inhibitor c	98.58
3oz2_A	397	Digeranylgeranylglycerophospholipid reductase; str	98.57
3pvc_A	689	TRNA 5-methylaminomethyl-2-thiouridine biosynthes	98.57
3cp8_A	641	TRNA uridine 5-carboxymethylaminomethyl modificati	98.56
2yqu_A	455	2-oxoglutarate dehydrogenase E3 component; lipoami	98.55
1y56_B	382	Sarcosine oxidase; dehydrogenase, protein-protein	98.55
2gmh_A	584	Electron transfer flavoprotein-ubiquinone oxidored	98.55
2qa1_A	500	PGAE, polyketide oxygenase PGAE; FAD, angucycline,	98.54
3rp8_A	407	Flavoprotein monooxygenase; FAD-binding protein, o	98.54
3e1t_A	512	Halogenase; flavoprotein; HET: FAD; 2.05A {Chondro	98.53
3dje_A	438	Fructosyl amine: oxygen oxidoreductase; fructosyl-	98.52
2bry_A	497	NEDD9 interacting protein with calponin homology a	98.52
2qa2_A	499	CABE, polyketide oxygenase CABE; FAD, angucycline,	98.51
3atr_A	453	Conserved archaeal protein; saturating double bond	98.51
2gag_B	405	Heterotetrameric sarcosine oxidase beta-subunit; f	98.48
1k0i_A	394	P-hydroxybenzoate hydroxylase; PHBH, FAD, P-OHB, h	98.45
1y0p_A	571	Fumarate reductase flavoprotein subunit; flavocyto	98.44
1qo8_A	566	Flavocytochrome C3 fumarate reductase; oxidoreduct	98.44
2gqw_A	408	Ferredoxin reductase; flavoprotein, oxidoreductase	98.43
2uzz_A	372	N-methyl-L-tryptophan oxidase; N-methyltryptophan	98.42
3nrn_A	421	Uncharacterized protein PF1083; alpha-beta protein	98.41
3ka7_A	425	Oxidoreductase; structural genomics, PSI-2, protei	98.41
2v3a_A	384	Rubredoxin reductase; alkane degradation, NADH oxi	98.4
3axb_A	448	Putative oxidoreductase; dinucleotide-binding fold	98.4
2r9z_A	463	Glutathione amide reductase; NAD, FAD, substrate s	98.39
3nyc_A	381	D-arginine dehydrogenase; FAD, imino-arginine, oxi	98.39
1ges_A	450	Glutathione reductase; oxidoreductase(flavoenzyme)	98.39
1lvl_A	458	Dihydrolipoamide dehydrogenase; oxidoreductase; HE	98.36
1xhc_A	367	NADH oxidase /nitrite reductase; southe collaborat	98.35
2eq6_A	464	Pyruvate dehydrogenase complex, dihydrolipoamide d	98.34
4eqs_A	437	Coenzyme A disulfide reductase; oxidoreductase; HE	98.34
3lxd_A	415	FAD-dependent pyridine nucleotide-disulphide oxido	98.34
1nhp_A	447	NADH peroxidase; oxidoreductase (H2O2(A)); HET: FA	98.33
1onf_A	500	GR, grase, glutathione reductase; oxidoreductase;	98.33
2gf3_A	389	MSOX, monomeric sarcosine oxidase; flavoprotein ox	98.33
3ef6_A	410	Toluene 1,2-dioxygenase system ferredoxin--NAD(+)	98.32
3kkj_A	336	Amine oxidase, flavin-containing; oxidoreductase,	98.31
3c96_A	410	Flavin-containing monooxygenase; FAD, oxidoreducta	98.3
3klj_A	385	NAD(FAD)-dependent dehydrogenase, NIRB-family (N-	98.3
2hqm_A	479	GR, grase, glutathione reductase; glutathione redu	98.3
2oln_A	397	NIKD protein; flavoprotein, rossmann fold, oxidore	98.3
3fg2_P	404	Putative rubredoxin reductase; ferredoxin reductas	98.29
4hb9_A	412	Similarities with probable monooxygenase; flavin,	98.29
2pyx_A	526	Tryptophan halogenase; structural genomics, JOI fo	98.29
3ics_A	588	Coenzyme A-disulfide reductase; pyridine nucleotid	98.29
1ebd_A	455	E3BD, dihydrolipoamide dehydrogenase; redox-active	98.28
2wpf_A	495	Trypanothione reductase; oxidoreductase, trypanoso	98.28
1fec_A	490	Trypanothione reductase; redox-active center, oxid	98.26
1q1r_A	431	Putidaredoxin reductase; glutathione reductase fol	98.25
1mo9_A	523	ORF3; nucleotide binding motifs, nucleotide bindin	98.25
2aqj_A	538	Tryptophan halogenase, pRNA; flavin-dependent halo	98.25
4b1b_A	542	TRXR, thioredoxin reductase; oxidoreductase, FAD,	98.25
1ojt_A	482	Surface protein; redox-active center, glycolysis,	98.24
2weu_A	511	Tryptophan 5-halogenase; regioselectivity, antifun	98.23
1kf6_A	602	Fumarate reductase flavoprotein; respiration, fuma	98.23
1v59_A	478	Dihydrolipoamide dehydrogenase; 2-oxoacid dehydrog	98.23
1zmd_A	474	Dihydrolipoyl dehydrogenase; lipoamide dehydrogena	98.22
1xdi_A	499	RV3303C-LPDA; reductase, FAD, NAD, NADP, unkno fun	98.21
2a8x_A	464	Dihydrolipoyl dehydrogenase, E3 component of alpha	98.19
2qcu_A	501	Aerobic glycerol-3-phosphate dehydrogenase; glycer	98.19
2bc0_A	490	NADH oxidase; flavoprotein, pyridine nucleotide di	98.19
2qae_A	468	Lipoamide, dihydrolipoyl dehydrogenase; FAD-cystin	98.17
3sx6_A	437	Sulfide-quinone reductase, putative; sulfide:quino	98.17
3hyw_A	430	Sulfide-quinone reductase; monotopic membrane prot	98.16
2dkh_A	639	3-hydroxybenzoate hydroxylase; flavoprotein, monoo	98.16
3c4n_A	405	Uncharacterized protein DR_0571; alpha-beta protei	98.16
3iwa_A	472	FAD-dependent pyridine nucleotide-disulphide oxido	98.15
3oc4_A	452	Oxidoreductase, pyridine nucleotide-disulfide FAM;	98.14
3nlc_A	549	Uncharacterized protein VP0956; FAD-binding protei	98.14
1dxl_A	470	Dihydrolipoamide dehydrogenase; oxidoreductase, mu	98.13
3jsk_A	344	Cypbp37 protein; octameric thiazole synthase, bios	98.13
3o0h_A	484	Glutathione reductase; ssgcid, structur genomics,	98.13
2cdu_A	452	NADPH oxidase; flavoenzyme, oxidoreductase; HET: F	98.13
3ntd_A	565	FAD-dependent pyridine nucleotide-disulphide oxido	98.12
3cgb_A	480	Pyridine nucleotide-disulfide oxidoreductase, CLA;	98.12
2gjc_A	326	Thiazole biosynthetic enzyme, mitochondrial; gluta	98.11
2r0c_A	549	REBC; flavin adenine dinucleotide, monooxygenase,	98.1
1zk7_A	467	HGII, reductase, mercuric reductase; mercuric ION	98.09
4a9w_A	357	Monooxygenase; baeyer-villiger, FAD, oxidoreductas	98.07
3da1_A	561	Glycerol-3-phosphate dehydrogenase; NESG BHR167 Q9	98.07
3ic9_A	492	Dihydrolipoamide dehydrogenase; APC62701, colwelli	98.07
3d1c_A	369	Flavin-containing putative monooxygenase; NP_37310	98.06
3vrd_B	401	FCCB subunit, flavocytochrome C flavin subunit; su	98.06
4at0_A	510	3-ketosteroid-delta4-5alpha-dehydrogenase; oxidore	98.06
4dna_A	463	Probable glutathione reductase; structural genomic	98.06
1chu_A	540	Protein (L-aspartate oxidase); flavoenzyme, NAD bi	98.06
3h8l_A	409	NADH oxidase; membrane protein, complete form, ros	98.06
1pj5_A	830	N,N-dimethylglycine oxidase; channelling, FAD bind	98.05
1trb_A	320	Thioredoxin reductase; oxidoreductase(flavoenzyme)	98.05
3lad_A	476	Dihydrolipoamide dehydrogenase; oxidoreductase; HE	98.05
1m6i_A	493	Programmed cell death protein 8; apoptosis, AIF, o	98.03
1fl2_A	310	Alkyl hydroperoxide reductase subunit F; reactive	98.02
3cty_A	319	Thioredoxin reductase; FAD, oxidoreductase, flavin	98.0
3lzw_A	332	Ferredoxin--NADP reductase 2; ferredoxin reductase	98.0
2zbw_A	335	Thioredoxin reductase; redox protein, oxidoreducta	98.0
3urh_A	491	Dihydrolipoyl dehydrogenase; PSI-biology, structur	98.0
3dgh_A	483	TRXR-1, thioredoxin reductase 1, mitochondrial; ox	97.99
3dk9_A	478	Grase, GR, glutathione reductase; flavoenzyme, nic	97.99
3nix_A	421	Flavoprotein/dehydrogenase; structural genomics, P	97.99
4ap3_A	549	Steroid monooxygenase; oxidoreductase, baeyer-vill	97.98
3fbs_A	297	Oxidoreductase; structural genomics, PSI2, MCSG, p	97.98
2q7v_A	325	Thioredoxin reductase; rossman fold, FAD, flavopro	97.98
3h28_A	430	Sulfide-quinone reductase; monotopic membrane prot	97.97
3oz2_A	397	Digeranylgeranylglycerophospholipid reductase; str	97.97
3itj_A	338	Thioredoxin reductase 1; disulfide B flavoprotein,	97.97
3dgz_A	488	Thioredoxin reductase 2; oxidoreductase, rossmann,	97.96
3kd9_A	449	Coenzyme A disulfide reductase; PSI-II, NYSGXRC, o	97.96
3r9u_A	315	Thioredoxin reductase; structural genomics, center	97.95
2a87_A	335	TRXR, TR, thioredoxin reductase; FAD, NAP, NMA, TL	97.95
2q0l_A	311	TRXR, thioredoxin reductase; bacterial thiredoxin	97.95
1vdc_A	333	NTR, NADPH dependent thioredoxin reductase; hypoth	97.91
3ab1_A	360	Ferredoxin--NADP reductase; oxidoreductase, electr	97.91
3v76_A	417	Flavoprotein; structural genomics, PSI-biology, NE	97.9
2wdq_A	588	Succinate dehydrogenase flavoprotein subunit; succ	97.9
3f8d_A	323	Thioredoxin reductase (TRXB-3); redox protein, nuc	97.89
2h88_A	621	Succinate dehydrogenase flavoprotein subunit; comp	97.88
3gwf_A	540	Cyclohexanone monooxygenase; flavoprotein biocatal	97.85
4g6h_A	502	Rotenone-insensitive NADH-ubiquinone oxidoreducta	97.83
1pn0_A	665	Phenol 2-monooxygenase; two dimers, TLS refinement	97.82
1hyu_A	521	AHPF, alkyl hydroperoxide reductase subunit F; thi	97.81
3qfa_A	519	Thioredoxin reductase 1, cytoplasmic; protein-prot	97.79
4fk1_A	304	Putative thioredoxin reductase; structural genomic	97.79
4gut_A	776	Lysine-specific histone demethylase 1B; histone de	97.79
4hb9_A	412	Similarities with probable monooxygenase; flavin,	97.79
3l8k_A	466	Dihydrolipoyl dehydrogenase; redox-active center,	97.78
2x3n_A	399	Probable FAD-dependent monooxygenase; oxidoreducta	97.78
3alj_A	379	2-methyl-3-hydroxypyridine-5-carboxylic acid OXYG;	97.77
2i0z_A	447	NAD(FAD)-utilizing dehydrogenases; structural geno	97.77
2gv8_A	447	Monooxygenase; FMO, FAD, NADPH, cofactor complex,	97.75
3dme_A	369	Conserved exported protein; structural genomics, P	97.74
3s5w_A	463	L-ornithine 5-monooxygenase; class B flavin depend	97.74
4gde_A	513	UDP-galactopyranose mutase; flavin adenine dinucle	97.72
3uox_A	545	Otemo; baeyer-villiger monooxygenase, oxidoreducta	97.71
3i6d_A	470	Protoporphyrinogen oxidase; protein-inhibitor comp	97.7
1qo8_A	566	Flavocytochrome C3 fumarate reductase; oxidoreduct	97.7
2x8g_A	598	Thioredoxin glutathione reductase; redox-active ce	97.69
3k30_A	690	Histamine dehydrogenase; 6-S-cysteinyl-FMN, ADP bi	97.69
3cgv_A	397	Geranylgeranyl reductase related protein; NP_39399	97.68
3ihm_A	430	Styrene monooxygenase A; rossman fold, anti-parall	97.65
3i3l_A	591	Alkylhalidase CMLS; flavin-dependent halogenase, c	97.63
1c0p_A	363	D-amino acid oxidase; alpha-beta-alpha motif, flav	97.63
3e1t_A	512	Halogenase; flavoprotein; HET: FAD; 2.05A {Chondro	97.62
1k0i_A	394	P-hydroxybenzoate hydroxylase; PHBH, FAD, P-OHB, h	97.62
3nks_A	477	Protoporphyrinogen oxidase; FAD containing protein	97.6
2b9w_A	424	Putative aminooxidase; isomerase, conjugated linol	97.6
1yvv_A	336	Amine oxidase, flavin-containing; oxidoreductase,	97.57
2e1m_A	376	L-glutamate oxidase; L-amino acid oxidase, FAD, L-	97.56
1ps9_A	671	2,4-dienoyl-COA reductase; iron-sulfur, TIM barrel	97.56
2bcg_G	453	Secretory pathway GDP dissociation inhibitor; RABG	97.55
1rsg_A	516	FMS1 protein; FAD binding motif, oxidoreductase; H	97.55
2zxi_A	637	TRNA uridine 5-carboxymethylaminomethyl modificat	97.55
2xve_A	464	Flavin-containing monooxygenase; oxidoreductase; H	97.54
2vou_A	397	2,6-dihydroxypyridine hydroxylase; oxidoreductase,	97.53
2yg5_A	453	Putrescine oxidase; oxidoreductase, flavin; HET: F	97.52
3atr_A	453	Conserved archaeal protein; saturating double bond	97.52
1v0j_A	399	UDP-galactopyranose mutase; flavoprotein, isomeras	97.52
3ces_A	651	MNMG, tRNA uridine 5-carboxymethylaminomethyl modi	97.51
1w4x_A	542	Phenylacetone monooxygenase; baeyer-villiger, FAD;	97.51
3qj4_A	342	Renalase; FAD/NAD(P)-binding rossmann fold superfa	97.5
4a5l_A	314	Thioredoxin reductase; oxidoreductase, redox metab	97.48
3rp8_A	407	Flavoprotein monooxygenase; FAD-binding protein, o	97.47
2xag_A	852	Lysine-specific histone demethylase 1; amine oxida	97.47
2jae_A	489	L-amino acid oxidase; oxidoreductase, dimerisation	97.46
2gqf_A	401	Hypothetical protein HI0933; structural genomics,	97.45
3hdq_A	397	UDP-galactopyranose mutase; substrate and inhibito	97.44
1y56_B	382	Sarcosine oxidase; dehydrogenase, protein-protein	97.44
3fmw_A	570	Oxygenase; mithramycin, baeyer-villiger, flavin bi	97.43
3lov_A	475	Protoporphyrinogen oxidase; structural genomics, J	97.42
4gcm_A	312	TRXR, thioredoxin reductase; FAD/NAD-linked reduct	97.41
3ps9_A	676	TRNA 5-methylaminomethyl-2-thiouridine biosynthes	97.39
3nyc_A	381	D-arginine dehydrogenase; FAD, imino-arginine, oxi	97.38
2vdc_G	456	Glutamate synthase [NADPH] small chain; oxidoreduc	97.38
1y0p_A	571	Fumarate reductase flavoprotein subunit; flavocyto	97.36
3cp8_A	641	TRNA uridine 5-carboxymethylaminomethyl modificati	97.36
2ivd_A	478	PPO, PPOX, protoporphyrinogen oxidase; porphyrin b	97.35
2gag_A	965	Heterotetrameric sarcosine oxidase alpha-subunit;	97.32
4dsg_A	484	UDP-galactopyranose mutase; rossmann fold, flavin	97.31
3c4a_A	381	Probable tryptophan hydroxylase VIOD; alpha-beta p	97.31
1d4d_A	572	Flavocytochrome C fumarate reductase; oxidoreducta	97.3
1sez_A	504	Protoporphyrinogen oxidase, mitochondrial; FAD-bin	97.28
1o94_A	729	Tmadh, trimethylamine dehydrogenase; electron tran	97.27
2qa2_A	499	CABE, polyketide oxygenase CABE; FAD, angucycline,	97.26
2z3y_A	662	Lysine-specific histone demethylase 1; chromatin,	97.25
2iid_A	498	L-amino-acid oxidase; flavoenzyme, FAD binding dom	97.24
2gmh_A	584	Electron transfer flavoprotein-ubiquinone oxidored	97.23
3g5s_A	443	Methylenetetrahydrofolate--tRNA-(uracil-5-)- methy	97.23
2bi7_A	384	UDP-galactopyranose mutase; FAD, flavoprotein, iso	97.22
2vvm_A	495	Monoamine oxidase N; FAD, peroxisome, flavoprotein	97.22
2xdo_A	398	TETX2 protein; tetracycline degradation, tigecycli	97.21
1i8t_A	367	UDP-galactopyranose mutase; rossman fold, FAD, con	97.19
3g3e_A	351	D-amino-acid oxidase; FAD, flavoprotein, oxidoredu	97.17
2qa1_A	500	PGAE, polyketide oxygenase PGAE; FAD, angucycline,	97.16
2gag_B	405	Heterotetrameric sarcosine oxidase beta-subunit; f	97.15
1ryi_A	382	Glycine oxidase; flavoprotein, protein-inhibitor c	97.12
3ihg_A	535	RDME; flavoenzyme, anthracycline, polyketide biosy	97.1
2bs2_A	660	Quinol-fumarate reductase flavoprotein subunit A;	97.07
1d5t_A	433	Guanine nucleotide dissociation inhibitor; ultra-h	97.06
3p1w_A	475	Rabgdi protein; GDI RAB, malaria, structural genom	96.97
2gf3_A	389	MSOX, monomeric sarcosine oxidase; flavoprotein ox	96.96
2aqj_A	538	Tryptophan halogenase, pRNA; flavin-dependent halo	96.95
3c96_A	410	Flavin-containing monooxygenase; FAD, oxidoreducta	96.95
1pj5_A	830	N,N-dimethylglycine oxidase; channelling, FAD bind	96.94
2rgh_A	571	Alpha-glycerophosphate oxidase; flavoprotein oxida	96.92
1gte_A	1025	Dihydropyrimidine dehydrogenase; electron transfer	96.92
3gyx_A	662	Adenylylsulfate reductase; oxidoreductase; HET: FA	96.88
3da1_A	561	Glycerol-3-phosphate dehydrogenase; NESG BHR167 Q9	96.84
4at0_A	510	3-ketosteroid-delta4-5alpha-dehydrogenase; oxidore	96.83
2uzz_A	372	N-methyl-L-tryptophan oxidase; N-methyltryptophan	96.83
3jsk_A	344	Cypbp37 protein; octameric thiazole synthase, bios	96.83
1jnr_A	643	Adenylylsulfate reductase; oxidoreductase; HET: FA	96.74
1lqt_A	456	FPRA; NADP+ derivative, oxidoreductase, structural	96.65
1b37_A	472	Protein (polyamine oxidase); flavin-dependent amin	96.59
1kdg_A	546	CDH, cellobiose dehydrogenase; GMC oxidoreductase,	96.58
2oln_A	397	NIKD protein; flavoprotein, rossmann fold, oxidore	96.56
1y56_A	493	Hypothetical protein PH1363; dehydrogenase, protei	96.5
2wdq_A	588	Succinate dehydrogenase flavoprotein subunit; succ	96.48
4gde_A	513	UDP-galactopyranose mutase; flavin adenine dinucle	96.47
3ayj_A	721	Pro-enzyme of L-phenylalanine oxidase; amino acid	96.35
2dkh_A	639	3-hydroxybenzoate hydroxylase; flavoprotein, monoo	96.31
1cjc_A	460	Protein (adrenodoxin reductase); flavoenzyme, MAD	96.29
1ju2_A	536	HydroxynitrIle lyase; flavin, GMC oxidoreductase,	96.26
3t37_A	526	Probable dehydrogenase; BET alpha beta fold, ADP b	96.22
3q9t_A	577	Choline dehydrogenase and related flavoproteins; g	96.19
1chu_A	540	Protein (L-aspartate oxidase); flavoenzyme, NAD bi	96.1
2rgh_A	571	Alpha-glycerophosphate oxidase; flavoprotein oxida	96.07
3c4n_A	405	Uncharacterized protein DR_0571; alpha-beta protei	95.88
3qvp_A	583	Glucose oxidase; oxidoreductase; HET: NAG BMA MAN	95.87
2qcu_A	501	Aerobic glycerol-3-phosphate dehydrogenase; glycer	95.86
1kf6_A	602	Fumarate reductase flavoprotein; respiration, fuma	95.86
1n4w_A	504	CHOD, cholesterol oxidase; flavoenzyme, steroid me	95.85
2r0c_A	549	REBC; flavin adenine dinucleotide, monooxygenase,	95.81
2e5v_A	472	L-aspartate oxidase; archaea, oxidoreductase; HET:	95.79
1coy_A	507	Cholesterol oxidase; oxidoreductase(oxygen recepto	95.78
2h88_A	621	Succinate dehydrogenase flavoprotein subunit; comp	95.7
1gpe_A	587	Protein (glucose oxidase); oxidoreductase(flavopro	95.55
1pn0_A	665	Phenol 2-monooxygenase; two dimers, TLS refinement	95.53
2jbv_A	546	Choline oxidase; alcohol oxidation, flavoenyzme ox	95.51
3fim_B	566	ARYL-alcohol oxidase; AAO, lignin degradation, oxi	95.4
2bs2_A	660	Quinol-fumarate reductase flavoprotein subunit A;	95.31
3fwz_A	140	Inner membrane protein YBAL; TRKA-N domain, E.coli	95.15
4gut_A	776	Lysine-specific histone demethylase 1B; histone de	95.01
3i6d_A	470	Protoporphyrinogen oxidase; protein-inhibitor comp	94.96
4b63_A	501	L-ornithine N5 monooxygenase; oxidoreductase, side	94.88
1jnr_A	643	Adenylylsulfate reductase; oxidoreductase; HET: FA	94.82
3lk7_A	451	UDP-N-acetylmuramoylalanine--D-glutamate ligase; a	94.62
1id1_A	153	Putative potassium channel protein; RCK domain, E.	94.61
3llv_A	141	Exopolyphosphatase-related protein; NAD(P)-binding	94.44
3p1w_A	475	Rabgdi protein; GDI RAB, malaria, structural genom	94.38
3eag_A	326	UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl-ME	94.37
2g1u_A	155	Hypothetical protein TM1088A; structural genomics,	94.34
3dje_A	438	Fructosyl amine: oxygen oxidoreductase; fructosyl-	94.14
3dfz_A	223	SIRC, precorrin-2 dehydrogenase; NAD dehydrogenase	93.83
1vg0_A	650	RAB proteins geranylgeranyltransferase component A	93.79
3gyx_A	662	Adenylylsulfate reductase; oxidoreductase; HET: FA	93.73
3ic5_A	118	Putative saccharopine dehydrogenase; structural ge	93.64
3dfz_A	223	SIRC, precorrin-2 dehydrogenase; NAD dehydrogenase	93.22
1lss_A	140	TRK system potassium uptake protein TRKA homolog;	92.86
2hmt_A	144	YUAA protein; RCK, KTN, KTR, KTRA, ktrab, membrane	92.59
4ffl_A	363	PYLC; amino acid, biosynthesis of pyrrolysine, iso	92.13
3i83_A	320	2-dehydropantoate 2-reductase; structural genomics	92.02
3c85_A	183	Putative glutathione-regulated potassium-efflux S	91.94
3kkj_A	336	Amine oxidase, flavin-containing; oxidoreductase,	91.86
2x5o_A	439	UDP-N-acetylmuramoylalanine--D-glutamate ligase; A	91.83
4hv4_A	494	UDP-N-acetylmuramate--L-alanine ligase; MURC, yers	91.82
1kyq_A	274	Met8P, siroheme biosynthesis protein Met8; homodim	91.53
3lk7_A	451	UDP-N-acetylmuramoylalanine--D-glutamate ligase; a	91.27
1f0y_A	302	HCDH, L-3-hydroxyacyl-COA dehydrogenase; abortive	90.68
3hn7_A	524	UDP-N-acetylmuramate-L-alanine ligase; ATP-binding	90.34
1jw9_B	249	Molybdopterin biosynthesis MOEB protein; MOEB: mod	89.73
1vl6_A	388	Malate oxidoreductase; TM0542, NAD-dependent malic	89.58
3l4b_C	218	TRKA K+ channel protien TM1088B; potassium channel	89.57
2a9f_A	398	Putative malic enzyme ((S)-malate:NAD+ oxidoreduct	89.55
4e12_A	283	Diketoreductase; oxidoreductase, NADH; HET: 1PE; 1	88.9
4dio_A	405	NAD(P) transhydrogenase subunit alpha PART 1; stru	88.76
2x5o_A	439	UDP-N-acetylmuramoylalanine--D-glutamate ligase; A	88.72
3hwr_A	318	2-dehydropantoate 2-reductase; YP_299159.1, PANE/A	88.68
3eag_A	326	UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl-ME	88.51
1y6j_A	318	L-lactate dehydrogenase; southeast collaboratory f	88.36
3hn2_A	312	2-dehydropantoate 2-reductase; PSI-2, NYSGXRC, str	88.34
3rui_A	340	Ubiquitin-like modifier-activating enzyme ATG7; au	88.33
3tl2_A	315	Malate dehydrogenase; center for structural genomi	88.26
3p2y_A	381	Alanine dehydrogenase/pyridine nucleotide transhy;	87.91
3fwz_A	140	Inner membrane protein YBAL; TRKA-N domain, E.coli	87.87
3fpz_A	326	Thiazole biosynthetic enzyme; FAD, mitochondrion,	87.83
2vvm_A	495	Monoamine oxidase N; FAD, peroxisome, flavoprotein	87.63
2bcg_G	453	Secretory pathway GDP dissociation inhibitor; RABG	87.57
1zud_1	251	Adenylyltransferase THIF; thiamin, thiazole, prote	87.53
3pqe_A	326	L-LDH, L-lactate dehydrogenase; FBP, oxidoreductas	87.46
3h8v_A	292	Ubiquitin-like modifier-activating enzyme 5; rossm	87.36
1pjq_A	457	CYSG, siroheme synthase; rossman fold, nucleotide	87.33
3nrn_A	421	Uncharacterized protein PF1083; alpha-beta protein	87.23
3i83_A	320	2-dehydropantoate 2-reductase; structural genomics	87.15
3d0o_A	317	L-LDH 1, L-lactate dehydrogenase 1; cytoplasm, gly	86.96
1vg0_A	650	RAB proteins geranylgeranyltransferase component A	86.96
1pzg_A	331	LDH, lactate dehydrogenase; apicomplexa, APAD, tet	86.94
3gpi_A	286	NAD-dependent epimerase/dehydratase; structural ge	86.66
3gvi_A	324	Malate dehydrogenase; NAD, oxidoreductase, tricarb	86.51
3ego_A	307	Probable 2-dehydropantoate 2-reductase; structural	86.46
3q2o_A	389	Phosphoribosylaminoimidazole carboxylase, ATPase;	86.46
3t37_A	526	Probable dehydrogenase; BET alpha beta fold, ADP b	86.31
1pjq_A	457	CYSG, siroheme synthase; rossman fold, nucleotide	86.21
1x13_A	401	NAD(P) transhydrogenase subunit alpha; NAD(H)-bind	86.17
3llv_A	141	Exopolyphosphatase-related protein; NAD(P)-binding	86.06
3hn2_A	312	2-dehydropantoate 2-reductase; PSI-2, NYSGXRC, str	86.04
1ldn_A	316	L-lactate dehydrogenase; oxidoreductase(CHOH(D)-NA	86.02
1d5t_A	433	Guanine nucleotide dissociation inhibitor; ultra-h	85.94
3k96_A	356	Glycerol-3-phosphate dehydrogenase [NAD(P)+]; GPSA	85.78
3fi9_A	343	Malate dehydrogenase; structural genomics, oxidore	85.64
3ghy_A	335	Ketopantoate reductase protein; oxidoreductase, NA	85.57
3orq_A	377	N5-carboxyaminoimidazole ribonucleotide synthetas;	85.53
2dpo_A	319	L-gulonate 3-dehydrogenase; structural genomics, N	85.52
1l7d_A	384	Nicotinamide nucleotide transhydrogenase, subunit	85.47
3ghy_A	335	Ketopantoate reductase protein; oxidoreductase, NA	85.17
1kjq_A	391	GART 2, phosphoribosylglycinamide formyltransferas	85.09
3ado_A	319	Lambda-crystallin; L-gulonate 3-dehydrogenase, str	85.0
2ew2_A	316	2-dehydropantoate 2-reductase, putative; alpha-str	84.96
3h5n_A	353	MCCB protein; ubiquitin-activating enzyme, microci	84.95
1bg6_A	359	N-(1-D-carboxylethyl)-L-norvaline dehydrogenase; L	84.91
2ew2_A	316	2-dehydropantoate 2-reductase, putative; alpha-str	84.9
3nv9_A	487	Malic enzyme; rossmann fold, oxidoreductase; 2.25A	84.74
4huj_A	220	Uncharacterized protein; PSI-biology, nysgrc, stru	84.74
3l9w_A	413	Glutathione-regulated potassium-efflux system Pro	84.63
1lld_A	319	L-lactate dehydrogenase; oxidoreductase(CHOH (D)-N	84.63
3ius_A	286	Uncharacterized conserved protein; APC63810, silic	84.59
1rp0_A	284	ARA6, thiazole biosynthetic enzyme; protein ligand	84.53
3phh_A	269	Shikimate dehydrogenase; shikimate pathway, helico	84.4
3ihm_A	430	Styrene monooxygenase A; rossman fold, anti-parall	84.24
2raf_A	209	Putative dinucleotide-binding oxidoreductase; NP_7	84.23
3p7m_A	321	Malate dehydrogenase; putative dehydrogenase, enzy	83.98
4e4t_A	419	Phosphoribosylaminoimidazole carboxylase, ATPase;	83.96
3vh1_A	598	Ubiquitin-like modifier-activating enzyme ATG7; au	83.91
4dgk_A	501	Phytoene dehydrogenase; the FAD/NAD(P)-binding ros	83.91
1y8q_A	346	Ubiquitin-like 1 activating enzyme E1A; SUMO, hete	83.75
3dhn_A	227	NAD-dependent epimerase/dehydratase; reductase, PF	83.6
1pjc_A	361	Protein (L-alanine dehydrogenase); oxidoreductase,	83.48
4gsl_A	615	Ubiquitin-like modifier-activating enzyme ATG7; ub	83.47
3vtf_A	444	UDP-glucose 6-dehydrogenase; two discrete alpha/be	83.24
3k5i_A	403	Phosphoribosyl-aminoimidazole carboxylase; purine	83.22
2iid_A	498	L-amino-acid oxidase; flavoenzyme, FAD binding dom	83.0
3g17_A	294	Similar to 2-dehydropantoate 2-reductase; structur	82.98
3ax6_A	380	Phosphoribosylaminoimidazole carboxylase, ATPase;	82.96
3doj_A	310	AT3G25530, dehydrogenase-like protein; gamma-hydro	82.8
3k7m_X	431	6-hydroxy-L-nicotine oxidase; enantiomeric substra	82.78
3nks_A	477	Protoporphyrinogen oxidase; FAD containing protein	82.77
2i6t_A	303	Ubiquitin-conjugating enzyme E2-like isoform A; L-	82.69
1nyt_A	271	Shikimate 5-dehydrogenase; alpha/beta domains, WID	82.66
1ez4_A	318	Lactate dehydrogenase; rossmann fold, oxidoreducta	82.54
3g5s_A	443	Methylenetetrahydrofolate--tRNA-(uracil-5-)- methy	82.5
3vku_A	326	L-LDH, L-lactate dehydrogenase; rossmann fold, NAD	82.42
3pvc_A	689	TRNA 5-methylaminomethyl-2-thiouridine biosynthes	82.35
3c24_A	286	Putative oxidoreductase; YP_511008.1, structural g	82.32
3oj0_A	144	Glutr, glutamyl-tRNA reductase; structural genomic	82.3
3jyo_A	283	Quinate/shikimate dehydrogenase; enzyme-cofactor c	82.25
2v6b_A	304	L-LDH, L-lactate dehydrogenase; oxidoreductase, ra	82.23
2uyy_A	316	N-PAC protein; long-chain dehydrogenase, cytokine;	82.23
1lss_A	140	TRK system potassium uptake protein TRKA homolog;	82.06
3r6d_A	221	NAD-dependent epimerase/dehydratase; structural ge	82.04
2ewd_A	317	Lactate dehydrogenase,; protein-substrate_cofactor	82.03
4g65_A	461	TRK system potassium uptake protein TRKA; structur	82.01
2zqz_A	326	L-LDH, L-lactate dehydrogenase; oxidoreductase, ro	81.94
3vps_A	321	TUNA, NAD-dependent epimerase/dehydratase; tunicam	81.93
1tt5_B	434	Ubiquitin-activating enzyme E1C isoform 1; cell cy	81.84
1hdo_A	206	Biliverdin IX beta reductase; foetal metabolism, H	81.83
3qha_A	296	Putative oxidoreductase; seattle structural genomi	81.66
4aj2_A	331	L-lactate dehydrogenase A chain; oxidoreductase-in	81.64
1ks9_A	291	KPA reductase;, 2-dehydropantoate 2-reductase; PAN	81.61
3i6i_A	346	Putative leucoanthocyanidin reductase 1; rossmann	81.61
2g1u_A	155	Hypothetical protein TM1088A; structural genomics,	81.61
2dvm_A	439	Malic enzyme, 439AA long hypothetical malate oxido	81.56
2egg_A	297	AROE, shikimate 5-dehydrogenase; dimer, X-RAY diff	81.49
3pwz_A	272	Shikimate dehydrogenase 3; alpha-beta, oxidoreduct	81.39
3tri_A	280	Pyrroline-5-carboxylate reductase; amino acid bios	81.33
1t2d_A	322	LDH-P, L-lactate dehydrogenase; ternary complex, o	81.32
2dwc_A	433	PH0318, 433AA long hypothetical phosphoribosylglyc	81.13

>3lxd_A FAD-dependent pyridine nucleotide-disulphide oxidoreductase; glutathione reductase (GR)-like ONFR; HET: FAD; 2.50A {Novosphingobium aromaticivorans}

Probab=100.00  E-value=1.5e-56  Score=450.67  Aligned_cols=377  Identities=30%  Similarity=0.518  Sum_probs=330.2

Q ss_pred             CCCCcEEEEcCcHHHHHHHHHHHHcCCCCCcEEEEcCCCCCCCCCCCCcccccCCCCCCCCCCCCCccccCCCCCCCCHh
Q 012165           49 NENREFVIVGGGNAAGYAARTFVEHGMADGRLCIVSKEAYAPYERPALTKGYLFPLDKKPARLPGFHTCVGSGGERQTPE  128 (469)
Q Consensus        49 ~~~~~vvIIGgG~AGl~aA~~L~~~g~~~~~V~vie~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  128 (469)
                      ++++||||||||+||++||.+|++.|+ +.+|+|||++++++|++|++++.++..... ...+           .....+
T Consensus         7 ~~~~~vvIIGaG~aGl~aA~~L~~~g~-~~~V~lie~~~~~~y~~~~l~~~~~~~~~~-~~~~-----------~~~~~~   73 (415)
T 3lxd_A            7 AERADVVIVGAGHGGAQAAIALRQNGF-EGRVLVIGREPEIPYERPPLSKEYLAREKT-FERI-----------CIRPAQ   73 (415)
T ss_dssp             CCEEEEEEECCSHHHHHHHHHHHHTTC-CSCEEEEESSSSCCBCSGGGGTTTTTTSSC-SGGG-----------BSSCHH
T ss_pred             CCCCcEEEECChHHHHHHHHHHHccCc-CCCEEEEecCCCCCcCcccCCHHHHcCCCC-HHHh-----------ccCCHH
Confidence            346899999999999999999999997 677999999999999999998766543211 1111           245678


Q ss_pred             HHHHCCcEEEeCCcEEEEeCCCcEEEeCCCeEEEeccEEeccCCCCCcCCCCCCCCcCcEEEecCHHHHHHHHHhhhc-C
Q 012165          129 WYKEKGIEMIYQDPVTSIDIEKQTLITNSGKLLKYGSLIVATGCTASRFPEKIGGYLPGVHYIRDVADADALISSLEK-A  207 (469)
Q Consensus       129 ~~~~~~i~~~~~~~v~~id~~~~~v~~~~g~~~~yd~lVlAtG~~~~~~~~~~g~~~~~v~~~~~~~~~~~~~~~~~~-~  207 (469)
                      ++.+.+++++.+++|..++++.+.|.+.+++.+.||+||+|||++|+ .|+++|.+.++++++++..+...+...+.. +
T Consensus        74 ~~~~~~i~~~~~~~v~~id~~~~~v~~~~g~~~~~d~lvlAtG~~~~-~~~i~g~~~~~v~~~~~~~d~~~l~~~~~~~~  152 (415)
T 3lxd_A           74 FWEDKAVEMKLGAEVVSLDPAAHTVKLGDGSAIEYGKLIWATGGDPR-RLSCVGADLAGVHAVRTKEDADRLMAELDAGA  152 (415)
T ss_dssp             HHHHTTEEEEETCCEEEEETTTTEEEETTSCEEEEEEEEECCCEECC-CCBTTSSCCBTEECCCSHHHHHHHHHHHHTTC
T ss_pred             HHHHCCcEEEeCCEEEEEECCCCEEEECCCCEEEeeEEEEccCCccC-CCCCCCccccCEEEEcCHHHHHHHHHHhhhcC
Confidence            89999999999999999999999999999999999999999999987 466778778899999999999888887777 9


Q ss_pred             CeEEEEcCChHHHHHHHHHHhCCCeEe-------------------eeHHHHHHcCcEEEcCCeEEEEEeCCCCcEEEEE
Q 012165          208 KKVVVVGGGYIGMEVAAAAVGWKLDTT-------------------RYEQLYQQNGVKFVKGASIKNLEAGSDGRVAAVK  268 (469)
Q Consensus       208 ~~vvVvG~G~~g~e~A~~l~~~g~~v~-------------------~~~~~l~~~gV~~~~~~~v~~i~~~~~~~v~~v~  268 (469)
                      ++++|||+|++|+|+|..+.++|.+++                   .+.+.+++.||++++++.|++++.+ ++++..|.
T Consensus       153 ~~vvViGgG~~g~e~A~~l~~~g~~Vtvv~~~~~~l~~~~~~~~~~~l~~~l~~~GV~i~~~~~v~~i~~~-~~~v~~v~  231 (415)
T 3lxd_A          153 KNAVVIGGGYIGLEAAAVLTKFGVNVTLLEALPRVLARVAGEALSEFYQAEHRAHGVDLRTGAAMDCIEGD-GTKVTGVR  231 (415)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHTTCEEEEEESSSSTTTTTSCHHHHHHHHHHHHHTTCEEEETCCEEEEEES-SSBEEEEE
T ss_pred             CeEEEECCCHHHHHHHHHHHhcCCeEEEEecCCchhhhhcCHHHHHHHHHHHHhCCCEEEECCEEEEEEec-CCcEEEEE
Confidence            999999999999999999999999987                   4567788999999999999999853 56777899


Q ss_pred             cCCCCEEeCCEEEEccCCccCCchhhhcCCcccCCCEEeCCCCCCCCCceEEeccccccCCccC-CcccccchHHHHHHH
Q 012165          269 LEDGSTIDADTIVIGIGAKPTVSPFERVGLNSSVGGIQVDGQFRTRMPGIFAIGDVAAFPLKMY-DRTARVEHVDHARQS  347 (469)
Q Consensus       269 ~~~g~~i~~D~vi~a~G~~p~~~~~~~~gl~~~~g~i~Vd~~~~t~~~~Vfa~GD~a~~~~~~~-~~~~~~~~~~~A~~~  347 (469)
                      +++|+++++|.||+|+|.+|++++++.+|+..+ ++|.||+++||++|+|||+|||+..+.... |...++++|..|..|
T Consensus       232 l~dG~~i~aD~Vv~a~G~~p~~~l~~~~gl~~~-~gi~vd~~~~t~~~~iyA~GD~a~~~~~~~~g~~~~~~~~~~A~~q  310 (415)
T 3lxd_A          232 MQDGSVIPADIVIVGIGIVPCVGALISAGASGG-NGVDVDEFCRTSLTDVYAIGDCAAHANDFADGAVIRLESVQNANDM  310 (415)
T ss_dssp             ESSSCEEECSEEEECSCCEESCHHHHHTTCCCS-SSEECCTTCBCSSTTEEECGGGEEEECGGGTTCEECCCSHHHHHHH
T ss_pred             eCCCCEEEcCEEEECCCCccChHHHHhCCCCcC-CCEEECCCCCcCCCCEEEEEeeeeecCcccCCcceeechHHHHHHH
Confidence            999999999999999999999999999999887 469999999999999999999999887655 777778899999999


Q ss_pred             HHHHHHHHhcCCCCCCCCCCceeeecccccCCCcceeeEEeecCCC--cEEEEccCC-CcEEEEEEeCCEEEEEEeecCC
Q 012165          348 AQHCIKALLSAQTHTYDYLPYFYSRVFEYEGSPRKVWWQFFGDNVG--ETIEIGNFD-PKIATFWIDSGKLKGVLVESGS  424 (469)
Q Consensus       348 a~~~a~~i~~~~~~~~~~~p~~~~~~~~~~g~~~~~~~~~~G~~~~--~~~~~~~~~-~~~~~~~~~~~~l~g~~~~~~~  424 (469)
                      |+.+|+||++. ..+|..+|||||++|+..       ++++|...+  +.+..++.+ .+|.++|+++|+|+|+++ +|+
T Consensus       311 g~~aa~~i~g~-~~~~~~~p~~~~~~~~~~-------~~~~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~-~~~  381 (415)
T 3lxd_A          311 ATAAAKDICGA-PVPYKATPWFWSNQYDLK-------LQTVGLSTGHDNAVLRGDPATRSFSVVYLKGGKVVALDC-VNM  381 (415)
T ss_dssp             HHHHHHHHTTC-CCCCCCCCEEEEEETTEE-------EEEEECCTTCSEEEEEEEGGGTEEEEEEEETTEEEEEEE-ESC
T ss_pred             HHHHHHHhcCC-CCCCCCCCeeEeeeCCcE-------EEEEeCCCCCCEEEEEecCCCCeEEEEEEECCEEEEEEE-ECC
Confidence            99999999975 468999999999999865       899998654  456666664 679999999999999996 899


Q ss_pred             hHHhHHHHHHHhCCCCCChhhhcCCC
Q 012165          425 PEEFQLLPTLARSQPFVDKAKLQQAS  450 (469)
Q Consensus       425 ~~~~~~~~~~~~~~~~~~~~~~~~~~  450 (469)
                      +..+..+++|++.+..+++..|.++.
T Consensus       382 ~~~~~~~~~~~~~~~~~~~~~l~~~~  407 (415)
T 3lxd_A          382 VKDYVQGKKLVEARAQIAPEQLADAG  407 (415)
T ss_dssp             HHHHHHHHHHHHHTCCCCHHHHTCTT
T ss_pred             hHHHHHHHHHHHCCCCCCHHHhcCCC
Confidence            99999999999999999988887664

>3fg2_P Putative rubredoxin reductase; ferredoxin reductase, RPA3782, F flavoprotein, oxidoreductase; HET: FAD; 2.20A {Rhodopseudomonas palustris}

Probab=100.00  E-value=3.5e-56  Score=446.16  Aligned_cols=375  Identities=30%  Similarity=0.477  Sum_probs=329.5

Q ss_pred             CCcEEEEcCcHHHHHHHHHHHHcCCCCCcEEEEcCCCCCCCCCCCCcccccCCCCCCCCCCCCCccccCCCCCCCCHhHH
Q 012165           51 NREFVIVGGGNAAGYAARTFVEHGMADGRLCIVSKEAYAPYERPALTKGYLFPLDKKPARLPGFHTCVGSGGERQTPEWY  130 (469)
Q Consensus        51 ~~~vvIIGgG~AGl~aA~~L~~~g~~~~~V~vie~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  130 (469)
                      +++|+|||||+||++||.+|++.|+ +.+|+|||++++++|++|++++.++.... ....+           .....+++
T Consensus         1 ~k~vvIIGaG~aGl~aA~~L~~~g~-~~~V~lie~~~~~~y~~~~l~~~~l~~~~-~~~~~-----------~~~~~~~~   67 (404)
T 3fg2_P            1 NDTVLIAGAGHAGFQVAVSLRQAKY-PGRIALINDEKHLPYQRPPLSKAYLKSGG-DPNSL-----------MFRPEKFF   67 (404)
T ss_dssp             CCCEEEECCSHHHHHHHHHHHHTTC-CSCEEEECCSSSSSBCSGGGGTGGGGSCC-CTTSS-----------BSSCHHHH
T ss_pred             CCCEEEEcChHHHHHHHHHHHhhCc-CCCEEEEeCCCCCCCCCccCCHHHHCCCC-CHHHc-----------cCCCHHHH
Confidence            3689999999999999999999997 67899999999999999999886664422 12222           24577889


Q ss_pred             HHCCcEEEeCCcEEEEeCCCcEEEeCCCeEEEeccEEeccCCCCCcCCCCCCCCcCcEEEecCHHHHHHHHHhhhcCCeE
Q 012165          131 KEKGIEMIYQDPVTSIDIEKQTLITNSGKLLKYGSLIVATGCTASRFPEKIGGYLPGVHYIRDVADADALISSLEKAKKV  210 (469)
Q Consensus       131 ~~~~i~~~~~~~v~~id~~~~~v~~~~g~~~~yd~lVlAtG~~~~~~~~~~g~~~~~v~~~~~~~~~~~~~~~~~~~~~v  210 (469)
                      .+.+++++. ++|+.++++.+.|++.+++++.||+||+|||++|+ .|.++|.+.++++++++..+...+...+..++++
T Consensus        68 ~~~~i~~~~-~~v~~id~~~~~v~~~~g~~~~~d~lvlAtG~~p~-~~~i~g~~~~~v~~~~~~~d~~~l~~~~~~~~~v  145 (404)
T 3fg2_P           68 QDQAIELIS-DRMVSIDREGRKLLLASGTAIEYGHLVLATGARNR-MLDVPNASLPDVLYLRTLDESEVLRQRMPDKKHV  145 (404)
T ss_dssp             HHTTEEEEC-CCEEEEETTTTEEEESSSCEEECSEEEECCCEEEC-CCCSTTTTSTTEECCSSHHHHHHHHHHGGGCSEE
T ss_pred             HhCCCEEEE-EEEEEEECCCCEEEECCCCEEECCEEEEeeCCCcc-CCCCCCCCCCcEEEECCHHHHHHHHHHhhcCCeE
Confidence            999999999 89999999999999999999999999999999887 4567787788999999999999988888889999


Q ss_pred             EEEcCChHHHHHHHHHHhCCCeEe-------------------eeHHHHHHcCcEEEcCCeEEEEEeCCCCcEEEEEcCC
Q 012165          211 VVVGGGYIGMEVAAAAVGWKLDTT-------------------RYEQLYQQNGVKFVKGASIKNLEAGSDGRVAAVKLED  271 (469)
Q Consensus       211 vVvG~G~~g~e~A~~l~~~g~~v~-------------------~~~~~l~~~gV~~~~~~~v~~i~~~~~~~v~~v~~~~  271 (469)
                      +|||+|++|+|+|..+.++|.+++                   .+.+.+++.||++++++.|++++.+ ++.+..|.+++
T Consensus       146 vViGgG~~g~e~A~~l~~~g~~Vtvv~~~~~~~~~~~~~~~~~~l~~~l~~~GV~i~~~~~v~~i~~~-~~~v~~V~~~d  224 (404)
T 3fg2_P          146 VVIGAGFIGLEFAATARAKGLEVDVVELAPRVMARVVTPEISSYFHDRHSGAGIRMHYGVRATEIAAE-GDRVTGVVLSD  224 (404)
T ss_dssp             EEECCSHHHHHHHHHHHHTTCEEEEECSSSSTTTTTSCHHHHHHHHHHHHHTTCEEECSCCEEEEEEE-TTEEEEEEETT
T ss_pred             EEECCCHHHHHHHHHHHhCCCEEEEEeCCCcchhhccCHHHHHHHHHHHHhCCcEEEECCEEEEEEec-CCcEEEEEeCC
Confidence            999999999999999999999887                   4567788999999999999999854 56777899999


Q ss_pred             CCEEeCCEEEEccCCccCCchhhhcCCcccCCCEEeCCCCCCCCCceEEeccccccCCccCCcccccchHHHHHHHHHHH
Q 012165          272 GSTIDADTIVIGIGAKPTVSPFERVGLNSSVGGIQVDGQFRTRMPGIFAIGDVAAFPLKMYDRTARVEHVDHARQSAQHC  351 (469)
Q Consensus       272 g~~i~~D~vi~a~G~~p~~~~~~~~gl~~~~g~i~Vd~~~~t~~~~Vfa~GD~a~~~~~~~~~~~~~~~~~~A~~~a~~~  351 (469)
                      |+++++|.||+|+|.+|++++++.+|+..++ +|.||+++||++|+|||+|||+..+....|...++++|..|..||+.+
T Consensus       225 G~~i~aD~Vv~a~G~~p~~~l~~~~gl~~~~-Gi~vd~~~~t~~~~iya~GD~a~~~~~~~g~~~~~~~~~~A~~qg~~a  303 (404)
T 3fg2_P          225 GNTLPCDLVVVGVGVIPNVEIAAAAGLPTAA-GIIVDQQLLTSDPHISAIGDCALFESVRFGETMRVESVQNATDQARCV  303 (404)
T ss_dssp             SCEEECSEEEECCCEEECCHHHHHTTCCBSS-SEEECTTSBCSSTTEEECGGGEEEEETTTTEEECCCSHHHHHHHHHHH
T ss_pred             CCEEEcCEEEECcCCccCHHHHHhCCCCCCC-CEEECCCcccCCCCEEEeecceeecCccCCceeeehHHHHHHHHHHHH
Confidence            9999999999999999999999999999884 599999999999999999999998876677777788999999999999


Q ss_pred             HHHHhcCCCCCCCCCCceeeecccccCCCcceeeEEeecCCC--cEEEEccCC-CcEEEEEEeCCEEEEEEeecCChHHh
Q 012165          352 IKALLSAQTHTYDYLPYFYSRVFEYEGSPRKVWWQFFGDNVG--ETIEIGNFD-PKIATFWIDSGKLKGVLVESGSPEEF  428 (469)
Q Consensus       352 a~~i~~~~~~~~~~~p~~~~~~~~~~g~~~~~~~~~~G~~~~--~~~~~~~~~-~~~~~~~~~~~~l~g~~~~~~~~~~~  428 (469)
                      |++|++. ..+|..+||||+++|+..       ++++|...+  +.+..++.+ .+|.++|+++|+|+|+++ +|+++.+
T Consensus       304 a~~i~g~-~~~~~~~p~~~~~~~~~~-------~~~~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~-~~~~~~~  374 (404)
T 3fg2_P          304 AARLTGD-AKPYDGYPWFWSDQGDDK-------LQIVGLTAGFDQVVIRGSVAERSFSAFCYKAGKLIGIES-VNRAADH  374 (404)
T ss_dssp             HHHTTTC-CCCCCCCCEEEEEETTEE-------EEEEECCTTCCEEEEEEETTTTEEEEEEEETTEEEEEEE-ESCHHHH
T ss_pred             HHHhCCC-CCCCCCCCceEeEECCcE-------EEEEeCCCCCCEEEEEecCCCCcEEEEEEECCEEEEEEE-eCCHHHH
Confidence            9999975 468999999999999865       889998653  456677664 579999999999999996 8999999


Q ss_pred             HHHHHHHhCCCCCChhhhcCCCc
Q 012165          429 QLLPTLARSQPFVDKAKLQQASS  451 (469)
Q Consensus       429 ~~~~~~~~~~~~~~~~~~~~~~~  451 (469)
                      ..+++||+++..+++..|.++..
T Consensus       375 ~~~~~~~~~~~~~~~~~l~~~~~  397 (404)
T 3fg2_P          375 VFGRKILPLDKSVTPEQAADLSF  397 (404)
T ss_dssp             HHHHHHTTTTCCCCHHHHHCTTS
T ss_pred             HHHHHHHHcCCCCCHHHhcCCCC
Confidence            99999999999999988877643

>3ef6_A Toluene 1,2-dioxygenase system ferredoxin--NAD(+) reductase; FAD binding protein, NADH binding protein, aromatic hydrocar catabolism, FAD; HET: FAD; 1.80A {Pseudomonas putida} PDB: 4emi_A* 4emj_A*

Probab=100.00  E-value=2.5e-56  Score=447.81  Aligned_cols=372  Identities=27%  Similarity=0.451  Sum_probs=323.8

Q ss_pred             CCcEEEEcCcHHHHHHHHHHHHcCCCCCcEEEEcCCCCCCCCCCCCcccccCCCCCCCCCCCCCccccCCCCCCCCHhHH
Q 012165           51 NREFVIVGGGNAAGYAARTFVEHGMADGRLCIVSKEAYAPYERPALTKGYLFPLDKKPARLPGFHTCVGSGGERQTPEWY  130 (469)
Q Consensus        51 ~~~vvIIGgG~AGl~aA~~L~~~g~~~~~V~vie~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  130 (469)
                      +++|||||||+||++||.+|++.|+ +.+|+|||++++++|++|++++.++..... ...+            ....+++
T Consensus         2 ~~~vvIIGaG~AGl~aA~~L~~~g~-~~~V~li~~~~~~~y~~~~l~~~~~~g~~~-~~~~------------~~~~~~~   67 (410)
T 3ef6_A            2 ATHVAIIGNGVGGFTTAQALRAEGF-EGRISLIGDEPHLPYDRPSLSKAVLDGSLE-RPPI------------LAEADWY   67 (410)
T ss_dssp             -CEEEEECCSHHHHHHHHHHHHTTC-CSEEEEEECSSSSSBCSGGGGTHHHHTSSS-SCCB------------SSCTTHH
T ss_pred             CCCEEEEcccHHHHHHHHHHHccCc-CCeEEEEECCCCCCcCCccccHHHhCCCCC-HHHh------------cCCHHHH
Confidence            4699999999999999999999997 677999999999999999998865533211 1111            2356788


Q ss_pred             HHCCcEEEeCCcEEEEeCCCcEEEeCCCeEEEeccEEeccCCCCCcCCCCCCCCcCcEEEecCHHHHHHHHHhhhcCCeE
Q 012165          131 KEKGIEMIYQDPVTSIDIEKQTLITNSGKLLKYGSLIVATGCTASRFPEKIGGYLPGVHYIRDVADADALISSLEKAKKV  210 (469)
Q Consensus       131 ~~~~i~~~~~~~v~~id~~~~~v~~~~g~~~~yd~lVlAtG~~~~~~~~~~g~~~~~v~~~~~~~~~~~~~~~~~~~~~v  210 (469)
                      ++.+++++.+++|+.++++.++|++.+|+++.||+||||||++|+ .|+++|.+.++++++++..+...+.+.+..++++
T Consensus        68 ~~~~i~~~~~~~v~~id~~~~~v~~~~g~~~~~d~lvlAtG~~p~-~~~ipG~~~~~v~~~~~~~d~~~l~~~~~~~~~v  146 (410)
T 3ef6_A           68 GEARIDMLTGPEVTALDVQTRTISLDDGTTLSADAIVIATGSRAR-TMALPGSQLPGVVTLRTYGDVQVLRDSWTSATRL  146 (410)
T ss_dssp             HHTTCEEEESCCEEEEETTTTEEEETTSCEEECSEEEECCCEEEC-CCCCTTTTSTTEECCCSHHHHHHHHHHCCTTCEE
T ss_pred             HHCCCEEEeCCEEEEEECCCCEEEECCCCEEECCEEEEccCCccc-CCCCCCccccceEEeccHHHHHHHHHHhccCCeE
Confidence            999999999999999999999999999999999999999999987 4667887788999999999998888877789999


Q ss_pred             EEEcCChHHHHHHHHHHhCCCeEe-------------------eeHHHHHHcCcEEEcCCeEEEEEeCCCCcEEEEEcCC
Q 012165          211 VVVGGGYIGMEVAAAAVGWKLDTT-------------------RYEQLYQQNGVKFVKGASIKNLEAGSDGRVAAVKLED  271 (469)
Q Consensus       211 vVvG~G~~g~e~A~~l~~~g~~v~-------------------~~~~~l~~~gV~~~~~~~v~~i~~~~~~~v~~v~~~~  271 (469)
                      +|||+|++|+|+|..+.++|.+++                   .+.+.+++.||++++++.+++++.+  +.+..|.++|
T Consensus       147 vViGgG~~g~E~A~~l~~~g~~Vtvv~~~~~~l~~~~~~~~~~~l~~~l~~~GV~i~~~~~v~~i~~~--~~~~~v~~~d  224 (410)
T 3ef6_A          147 LIVGGGLIGCEVATTARKLGLSVTILEAGDELLVRVLGRRIGAWLRGLLTELGVQVELGTGVVGFSGE--GQLEQVMASD  224 (410)
T ss_dssp             EEECCSHHHHHHHHHHHHTTCEEEEECSSSSSSHHHHCHHHHHHHHHHHHHHTCEEECSCCEEEEECS--SSCCEEEETT
T ss_pred             EEECCCHHHHHHHHHHHhCCCeEEEEecCCccchhhcCHHHHHHHHHHHHHCCCEEEeCCEEEEEecc--CcEEEEEECC
Confidence            999999999999999999999988                   4467788999999999999999853  3555789999


Q ss_pred             CCEEeCCEEEEccCCccCCchhhhcCCcccCCCEEeCCCCCCCCCceEEeccccccCCccCCcccccchHHHHHHHHHHH
Q 012165          272 GSTIDADTIVIGIGAKPTVSPFERVGLNSSVGGIQVDGQFRTRMPGIFAIGDVAAFPLKMYDRTARVEHVDHARQSAQHC  351 (469)
Q Consensus       272 g~~i~~D~vi~a~G~~p~~~~~~~~gl~~~~g~i~Vd~~~~t~~~~Vfa~GD~a~~~~~~~~~~~~~~~~~~A~~~a~~~  351 (469)
                      |+++++|.||+|+|.+|++++++++|++.+ ++|.||++++|++|+|||+|||+..+... |...+.++|..|..||+.+
T Consensus       225 g~~i~aD~Vv~a~G~~p~~~l~~~~gl~~~-~gi~vd~~~~t~~~~IyA~GD~a~~~~~~-g~~~~~~~~~~A~~qg~~a  302 (410)
T 3ef6_A          225 GRSFVADSALICVGAEPADQLARQAGLACD-RGVIVDHCGATLAKGVFAVGDVASWPLRA-GGRRSLETYMNAQRQAAAV  302 (410)
T ss_dssp             SCEEECSEEEECSCEEECCHHHHHTTCCBS-SSEECCTTSBCSSTTEEECGGGEEEEBTT-SSEECCCCHHHHHHHHHHH
T ss_pred             CCEEEcCEEEEeeCCeecHHHHHhCCCccC-CeEEEccCeeECCCCEEEEEcceeccCCC-CCeeeechHHHHHHHHHHH
Confidence            999999999999999999999999999988 56999999999999999999999987655 6666788899999999999


Q ss_pred             HHHHhcCCCCCCCCCCceeeecccccCCCcceeeEEeecCCC--cEEEEccCC-CcEEEEEEeCCEEEEEEeecCChHHh
Q 012165          352 IKALLSAQTHTYDYLPYFYSRVFEYEGSPRKVWWQFFGDNVG--ETIEIGNFD-PKIATFWIDSGKLKGVLVESGSPEEF  428 (469)
Q Consensus       352 a~~i~~~~~~~~~~~p~~~~~~~~~~g~~~~~~~~~~G~~~~--~~~~~~~~~-~~~~~~~~~~~~l~g~~~~~~~~~~~  428 (469)
                      |++|++. ..+|..+||||+++|++.       ++++|...+  +.+..++.+ ..|.+||+++|+|+|+++ .|++..+
T Consensus       303 a~~i~g~-~~~~~~~p~~~~~~~~~~-------~~~~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~~~-~~~~~~~  373 (410)
T 3ef6_A          303 AAAILGK-NVSAPQLPVSWTEIAGHR-------MQMAGDIEGPGDFVSRGMPGSGAALLFRLQERRIQAVVA-VDAPRDF  373 (410)
T ss_dssp             HHHHTTC-CCCCCBCCEEEEEETTEE-------EEEESCSSSSSEEEEESCTTSSSEEEEEEETTEEEEEEE-ESCHHHH
T ss_pred             HHHHcCC-CCCCCCCCeeEEEECCce-------EEEEcCCCCCCEEEEEeeCCCCeEEEEEEECCEEEEEEE-ECChHHH
Confidence            9999975 468999999999999865       888997654  566677765 579999999999999996 8999999


Q ss_pred             HHHHHHHhCCCCCChhhhcCCC
Q 012165          429 QLLPTLARSQPFVDKAKLQQAS  450 (469)
Q Consensus       429 ~~~~~~~~~~~~~~~~~~~~~~  450 (469)
                      ..+++|++.+..+++..|.++.
T Consensus       374 ~~~~~~i~~~~~~~~~~l~~~~  395 (410)
T 3ef6_A          374 ALATRLVEARAAIEPARLADLS  395 (410)
T ss_dssp             HHHHHHHHHTCBCCHHHHHCTT
T ss_pred             HHHHHHHhCCCCCCHHHhcCCC
Confidence            9999999999999988887654

>1q1r_A Putidaredoxin reductase; glutathione reductase fold, oxidoreductase; HET: FAD; 1.91A {Pseudomonas putida} SCOP: c.3.1.5 c.3.1.5 d.87.1.1 PDB: 1q1w_A* 3lb8_A*

Probab=100.00  E-value=5.8e-52  Score=418.47  Aligned_cols=384  Identities=29%  Similarity=0.477  Sum_probs=320.8

Q ss_pred             CCCcEEEEcCcHHHHHHHHHHHHcCCCCCcEEEEcCCCCCCCCCCCCcccccCCCCCCCCCCCCCccccCCCCCCCCHhH
Q 012165           50 ENREFVIVGGGNAAGYAARTFVEHGMADGRLCIVSKEAYAPYERPALTKGYLFPLDKKPARLPGFHTCVGSGGERQTPEW  129 (469)
Q Consensus        50 ~~~~vvIIGgG~AGl~aA~~L~~~g~~~~~V~vie~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  129 (469)
                      +++||+|||||+||+++|..|++.|+ +.+|+|||+++..+|.++++++.++.... ....+           .....++
T Consensus         3 ~~~~vvIIGgG~aGl~aA~~l~~~g~-~~~V~lie~~~~~~~~~~~l~~~~~~~~~-~~~~~-----------~~~~~~~   69 (431)
T 1q1r_A            3 ANDNVVIVGTGLAGVEVAFGLRASGW-EGNIRLVGDATVIPHHLPPLSKAYLAGKA-TAESL-----------YLRTPDA   69 (431)
T ss_dssp             CSCEEEEECCSHHHHHHHHHHHHTTC-CSEEEEECSCCSCCBCSGGGGTTTTTTCS-CSGGG-----------BSSCHHH
T ss_pred             CCCcEEEEcCHHHHHHHHHHHHccCc-CCCEEEEECCCCCCCcCCCCcHHHhCCCC-ChHHh-----------cccCHHH
Confidence            45899999999999999999999987 66899999999999999888876553221 11111           1345678


Q ss_pred             HHHCCcEEEeCCcEEEEeCCCcEEEeCCCeEEEeccEEeccCCCCCcCCCCCCCCcCc---EEEecCHHHHHHHHHhhhc
Q 012165          130 YKEKGIEMIYQDPVTSIDIEKQTLITNSGKLLKYGSLIVATGCTASRFPEKIGGYLPG---VHYIRDVADADALISSLEK  206 (469)
Q Consensus       130 ~~~~~i~~~~~~~v~~id~~~~~v~~~~g~~~~yd~lVlAtG~~~~~~~~~~g~~~~~---v~~~~~~~~~~~~~~~~~~  206 (469)
                      +++.+++++.+++|+.++++.++|++.+|+++.||+||+|||++|+ .|+++|.+.++   ++++++..+...+.+.+..
T Consensus        70 ~~~~gv~~~~~~~v~~i~~~~~~v~~~~g~~~~~d~lviAtG~~p~-~~~i~G~~~~~~~~v~~~~~~~d~~~l~~~l~~  148 (431)
T 1q1r_A           70 YAAQNIQLLGGTQVTAINRDRQQVILSDGRALDYDRLVLATGGRPR-PLPVASGAVGKANNFRYLRTLEDAECIRRQLIA  148 (431)
T ss_dssp             HHHTTEEEECSCCEEEEETTTTEEEETTSCEEECSEEEECCCEEEC-CCGGGTTHHHHSTTEEESSSHHHHHHHHHTCCT
T ss_pred             HHhCCCEEEeCCEEEEEECCCCEEEECCCCEEECCEEEEcCCCCcc-CCCCCCcccCCCceEEEECCHHHHHHHHHHhhc
Confidence            8999999999999999999989999999989999999999999987 45667765566   8889999988888777777


Q ss_pred             CCeEEEEcCChHHHHHHHHHHhCCCeEe-------------------eeHHHHHHcCcEEEcCCeEEEEEeC-CCCcEEE
Q 012165          207 AKKVVVVGGGYIGMEVAAAAVGWKLDTT-------------------RYEQLYQQNGVKFVKGASIKNLEAG-SDGRVAA  266 (469)
Q Consensus       207 ~~~vvVvG~G~~g~e~A~~l~~~g~~v~-------------------~~~~~l~~~gV~~~~~~~v~~i~~~-~~~~v~~  266 (469)
                      +++++|||+|++|+|+|..|.++|.+|+                   .+.+.+++.||++++++.+++++.. +++.+..
T Consensus       149 ~~~vvViGgG~~g~E~A~~l~~~G~~Vtlv~~~~~~l~~~~~~~~~~~l~~~l~~~GV~i~~~~~v~~i~~~~~~~~v~~  228 (431)
T 1q1r_A          149 DNRLVVIGGGYIGLEVAATAIKANMHVTLLDTAARVLERVTAPPVSAFYEHLHREAGVDIRTGTQVCGFEMSTDQQKVTA  228 (431)
T ss_dssp             TCEEEEECCSHHHHHHHHHHHHTTCEEEEECSSSSTTTTTSCHHHHHHHHHHHHHHTCEEECSCCEEEEEECTTTCCEEE
T ss_pred             CCeEEEECCCHHHHHHHHHHHhCCCEEEEEEeCCccccchhhHHHHHHHHHHHHhCCeEEEeCCEEEEEEeccCCCcEEE
Confidence            9999999999999999999999999987                   3456788899999999999999852 3466667


Q ss_pred             EEcCCCCEEeCCEEEEccCCccCCchhhhcCCcccCCCEEeCCCCCCCCCceEEeccccccCCccCCcccccchHHHHHH
Q 012165          267 VKLEDGSTIDADTIVIGIGAKPTVSPFERVGLNSSVGGIQVDGQFRTRMPGIFAIGDVAAFPLKMYDRTARVEHVDHARQ  346 (469)
Q Consensus       267 v~~~~g~~i~~D~vi~a~G~~p~~~~~~~~gl~~~~g~i~Vd~~~~t~~~~Vfa~GD~a~~~~~~~~~~~~~~~~~~A~~  346 (469)
                      |.+++|+++++|.||+|+|.+|++++++++|++.+ ++|.||+++||+.|+|||+|||+..+....|...++++|..|..
T Consensus       229 v~~~~G~~i~~D~Vv~a~G~~p~~~l~~~~gl~~~-~gi~Vd~~~~ts~~~IyA~GD~~~~~~~~~g~~~~~~~~~~A~~  307 (431)
T 1q1r_A          229 VLCEDGTRLPADLVIAGIGLIPNCELASAAGLQVD-NGIVINEHMQTSDPLIMAVGDCARFHSQLYDRWVRIESVPNALE  307 (431)
T ss_dssp             EEETTSCEEECSEEEECCCEEECCHHHHHTTCCBS-SSEECCTTSBCSSTTEEECGGGEEEEETTTTEEEECCSHHHHHH
T ss_pred             EEeCCCCEEEcCEEEECCCCCcCcchhhccCCCCC-CCEEECCCcccCCCCEEEEEeEEEEccccCCceEeeCHHHHHHH
Confidence            88999999999999999999999999999999887 46999999999999999999999987655566666778999999


Q ss_pred             HHHHHHHHHhcCCCCCCCCCCceeeecccccCCCcceeeEEeecCCC--cEEEEccCC-CcEEEEEEeCCEEEEEEeecC
Q 012165          347 SAQHCIKALLSAQTHTYDYLPYFYSRVFEYEGSPRKVWWQFFGDNVG--ETIEIGNFD-PKIATFWIDSGKLKGVLVESG  423 (469)
Q Consensus       347 ~a~~~a~~i~~~~~~~~~~~p~~~~~~~~~~g~~~~~~~~~~G~~~~--~~~~~~~~~-~~~~~~~~~~~~l~g~~~~~~  423 (469)
                      ||+.+|++|++. ..+|..+|++|+++|+..       ++.+|....  +....++.+ ..|.++|.++|+|+|+++ .+
T Consensus       308 qg~~aa~~i~g~-~~~~~~~p~~~~~~~~~~-------~~~~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~G~~~-~g  378 (431)
T 1q1r_A          308 QARKIAAILCGK-VPRDEAAPWFWSDQYEIG-------LKMVGLSEGYDRIIVRGSLAQPDFSVFYLQGDRVLAVDT-VN  378 (431)
T ss_dssp             HHHHHHHHHTTC-CCCCCCCCEEEEEETTEE-------EEEEECCTTCSEEEEEEETTTTEEEEEEEETTEEEEEEE-ES
T ss_pred             HHHHHHHHhcCC-CCCCCCCCeEEEEECCce-------EEEEeCCCCCCEEEEEccCCCCeEEEEEEeCCEEEEEEE-EC
Confidence            999999999964 457888999999998754       777887543  345555554 458888999999999996 78


Q ss_pred             ChHHhHHHHHHHhCCCCCChhhhcCCC-cHHHHHH
Q 012165          424 SPEEFQLLPTLARSQPFVDKAKLQQAS-SVEEALE  457 (469)
Q Consensus       424 ~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~  457 (469)
                      +......++.++..+..++...|.++. .+.+.++
T Consensus       379 ~~~~~~~~~~~i~~~~~~~~~~l~~~~~~~~~~~~  413 (431)
T 1q1r_A          379 RPVEFNQSKQIITDRLPVEPNLLGDESVPLKEIIA  413 (431)
T ss_dssp             CHHHHHHHHHHHHTTCCCCHHHHTCTTSCHHHHHH
T ss_pred             ChHHHHHHHHHHHCCCCCCHHHhhCCCCCHHHHHH
Confidence            888888899999999999988876654 4444443

>3klj_A NAD(FAD)-dependent dehydrogenase, NIRB-family (N- domain); FAD-binding protein, GR-fold, oxidoreductase; HET: FAD; 2.10A {Clostridium acetobutylicum}

Probab=100.00  E-value=6.2e-53  Score=418.45  Aligned_cols=354  Identities=21%  Similarity=0.314  Sum_probs=297.3

Q ss_pred             CCCCcEEEEcCcHHHHHHHHHHHHcCCCCCcEEEEcCCCCCCCCCCCCcccccCCCCCCCCCCCCCccccCCCCCCCCHh
Q 012165           49 NENREFVIVGGGNAAGYAARTFVEHGMADGRLCIVSKEAYAPYERPALTKGYLFPLDKKPARLPGFHTCVGSGGERQTPE  128 (469)
Q Consensus        49 ~~~~~vvIIGgG~AGl~aA~~L~~~g~~~~~V~vie~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  128 (469)
                      .++.+|||||||+||++||.+|++.   ..+|+|||++++++|.+|.+++. +.... ...++           .....+
T Consensus         7 ~~~~~~vIvGgG~AGl~aA~~L~~~---~~~itlie~~~~~~y~~~~l~~~-l~g~~-~~~~l-----------~~~~~~   70 (385)
T 3klj_A            7 HKSTKILILGAGPAGFSAAKAALGK---CDDITMINSEKYLPYYRPRLNEI-IAKNK-SIDDI-----------LIKKND   70 (385)
T ss_dssp             -CBCSEEEECCSHHHHHHHHHHTTT---CSCEEEECSSSSCCBCGGGHHHH-HHSCC-CGGGT-----------BSSCHH
T ss_pred             cCCCCEEEEcCcHHHHHHHHHHhCC---CCEEEEEECCCCCCcccChhhHH-HcCCC-CHHHc-----------cCCCHH
Confidence            4557999999999999999999443   45899999999999999999873 33211 11122           346788


Q ss_pred             HHHHCCcEEEeCCcEEEEeCCCcEEEeCCCeEEEeccEEeccCCCCCcCCCCCCCCcCcEEEecCHHHHHHHHHhhhcCC
Q 012165          129 WYKEKGIEMIYQDPVTSIDIEKQTLITNSGKLLKYGSLIVATGCTASRFPEKIGGYLPGVHYIRDVADADALISSLEKAK  208 (469)
Q Consensus       129 ~~~~~~i~~~~~~~v~~id~~~~~v~~~~g~~~~yd~lVlAtG~~~~~~~~~~g~~~~~v~~~~~~~~~~~~~~~~~~~~  208 (469)
                      ++++.+++++++++|+++|++.++|++++|+++.||+||||||++|+ .|+++|.+  +++++++..+...+.+.+..++
T Consensus        71 ~~~~~~i~~~~~~~V~~id~~~~~v~~~~g~~~~yd~lvlAtG~~p~-~p~i~G~~--~v~~~~~~~d~~~l~~~l~~~~  147 (385)
T 3klj_A           71 WYEKNNIKVITSEFATSIDPNNKLVTLKSGEKIKYEKLIIASGSIAN-KIKVPHAD--EIFSLYSYDDALKIKDECKNKG  147 (385)
T ss_dssp             HHHHTTCEEECSCCEEEEETTTTEEEETTSCEEECSEEEECCCEEEC-CCCCTTCS--CEECCSSHHHHHHHHHHHHHHS
T ss_pred             HHHHCCCEEEeCCEEEEEECCCCEEEECCCCEEECCEEEEecCCCcC-CCCCCCCC--CeEEeCCHHHHHHHHHHhhcCC
Confidence            99999999999999999999999999999999999999999999987 45677755  8899999999998888777889


Q ss_pred             eEEEEcCChHHHHHHHHHHhCCCeEe-------------------eeHHHHHHcCcEEEcCCeEEEEEeCCCCcEEEEEc
Q 012165          209 KVVVVGGGYIGMEVAAAAVGWKLDTT-------------------RYEQLYQQNGVKFVKGASIKNLEAGSDGRVAAVKL  269 (469)
Q Consensus       209 ~vvVvG~G~~g~e~A~~l~~~g~~v~-------------------~~~~~l~~~gV~~~~~~~v~~i~~~~~~~v~~v~~  269 (469)
                      +++|||+|++|+|+|..|+++|.+|+                   .+.+.+++.||++++++.++++             
T Consensus       148 ~vvVIGgG~~g~E~A~~l~~~g~~Vtvv~~~~~~l~~~~~~~~~~~~~~~l~~~gV~~~~~~~v~~i-------------  214 (385)
T 3klj_A          148 KAFIIGGGILGIELAQAIIDSGTPASIGIILEYPLERQLDRDGGLFLKDKLDRLGIKIYTNSNFEEM-------------  214 (385)
T ss_dssp             CEEEECCSHHHHHHHHHHHHHTCCEEEECSSSSSCTTTSCHHHHHHHHHHHHTTTCEEECSCCGGGC-------------
T ss_pred             eEEEECCCHHHHHHHHHHHhCCCeEEEEEcCCccchhhcCHHHHHHHHHHHHhCCCEEEeCCEEEEc-------------
Confidence            99999999999999999999999988                   4567788999999999877655             


Q ss_pred             CCCCEEeCCEEEEccCCccCCchhhhcCCcccCCCEEeCCCCCCCCCceEEeccccccCCccCCcccccchHHHHHHHHH
Q 012165          270 EDGSTIDADTIVIGIGAKPTVSPFERVGLNSSVGGIQVDGQFRTRMPGIFAIGDVAAFPLKMYDRTARVEHVDHARQSAQ  349 (469)
Q Consensus       270 ~~g~~i~~D~vi~a~G~~p~~~~~~~~gl~~~~g~i~Vd~~~~t~~~~Vfa~GD~a~~~~~~~~~~~~~~~~~~A~~~a~  349 (469)
                        |+++++|.||+++|++|++++++++|+..+ ++|.||+++||+.|+|||+|||+..+...      ..+|..|..||+
T Consensus       215 --g~~~~~D~vv~a~G~~p~~~~~~~~gl~~~-~gi~vd~~~~t~~~~IyA~GD~a~~~~~~------~~~~~~A~~qg~  285 (385)
T 3klj_A          215 --GDLIRSSCVITAVGVKPNLDFIKDTEIASK-RGILVNDHMETSIKDIYACGDVAEFYGKN------PGLINIANKQGE  285 (385)
T ss_dssp             --HHHHHHSEEEECCCEEECCGGGTTSCCCBS-SSEEECTTCBCSSTTEEECGGGEEETTBC------CCCHHHHHHHHH
T ss_pred             --CeEEecCeEEECcCcccChhhhhhcCCCcC-CCEEECCCcccCCCCEEEEEeeEecCCCc------ccHHHHHHHHHH
Confidence              567999999999999999999999999887 45999999999999999999999876432      236888999999


Q ss_pred             HHHHHHhcCCCCCCCC-CCceeeecccccCCCcceeeEEeecCCC---cEEEEccCCCcEEEEEEeCCEEEEEEeecCCh
Q 012165          350 HCIKALLSAQTHTYDY-LPYFYSRVFEYEGSPRKVWWQFFGDNVG---ETIEIGNFDPKIATFWIDSGKLKGVLVESGSP  425 (469)
Q Consensus       350 ~~a~~i~~~~~~~~~~-~p~~~~~~~~~~g~~~~~~~~~~G~~~~---~~~~~~~~~~~~~~~~~~~~~l~g~~~~~~~~  425 (469)
                      .+|++|++. ..+|.. +|++|+++|+..       ++.+|....   +.+.....+..|.++|+++|+|+|+++ .|+.
T Consensus       286 ~aa~~i~g~-~~~~~~~~~~~~~~~~~~~-------~~~~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~~~-~g~~  356 (385)
T 3klj_A          286 VAGLNACGE-DASYSEIIPSPILKVSGIS-------IISCGDIENNKPSKVFRSTQEDKYIVCMLKENKIDAAAV-IGDV  356 (385)
T ss_dssp             HHHHHHTTC-CCCCCCCCCCCEEEETTEE-------EEEESCCTTCCCSEEEEEECSSCEEEEEEETTEEEEEEE-ESCH
T ss_pred             HHHHHhcCC-CcCCCCCCCcEEEEeCCCc-------EEEEcCCCCCCCeEEEEECCCCeEEEEEEECCEEEEEEE-ECCc
Confidence            999999974 456765 699999999865       788887653   334442224579999999999999996 7888


Q ss_pred             HHhHHHHHHHhCCCCCChhhhcCCCcHHHHHH
Q 012165          426 EEFQLLPTLARSQPFVDKAKLQQASSVEEALE  457 (469)
Q Consensus       426 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  457 (469)
                      .....++.+++++.+++.-     ++++|.|+
T Consensus       357 ~~~~~~~~~i~~~~~~~~~-----~~~~E~~~  383 (385)
T 3klj_A          357 SLGTKLKKAIDSSKSFDNI-----SSLDAILN  383 (385)
T ss_dssp             HHHHHHHHHHHTTCBCSCC-----SCHHHHHT
T ss_pred             HHHHHHHHHHHcCCCcccc-----cCHHHHHh
Confidence            8888899999998877644     89999886

>2gqw_A Ferredoxin reductase; flavoprotein, oxidoreductase; HET: FAD; 1.40A {Pseudomonas SP} PDB: 1f3p_A* 1d7y_A* 2gr0_A* 2gr1_A* 2gr2_A* 2yvf_A* 2yvg_A* 2yvj_A* 2gr3_A*

Probab=100.00  E-value=8.7e-52  Score=414.42  Aligned_cols=372  Identities=26%  Similarity=0.403  Sum_probs=309.0

Q ss_pred             CCCcEEEEcCcHHHHHHHHHHHHcCCCCCcEEEEcCCCCCCCCCCCCcccccCCCCCCCCCCCCCccccCCCCCCCCHhH
Q 012165           50 ENREFVIVGGGNAAGYAARTFVEHGMADGRLCIVSKEAYAPYERPALTKGYLFPLDKKPARLPGFHTCVGSGGERQTPEW  129 (469)
Q Consensus        50 ~~~~vvIIGgG~AGl~aA~~L~~~g~~~~~V~vie~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  129 (469)
                      +++||+|||||+||+++|..|++.|+ +.+|+|||+++..+|.+|.+++.++....  ..++             ... +
T Consensus         6 ~~~~vvIIG~G~aGl~aA~~l~~~g~-~~~V~lie~~~~~~~~~~~~~~~~~~~~~--~~~~-------------~~~-~   68 (408)
T 2gqw_A            6 LKAPVVVLGAGLASVSFVAELRQAGY-QGLITVVGDEAERPYDRPPLSKDFMAHGD--AEKI-------------RLD-C   68 (408)
T ss_dssp             CCSSEEEECCSHHHHHHHHHHHHHTC-CSCEEEEESSCSCCBCSGGGGTHHHHHCC--GGGS-------------BCC-C
T ss_pred             CCCcEEEECChHHHHHHHHHHHccCC-CCeEEEEECCCCCcccCCCCCHHHhCCCc--hhhh-------------hHH-H
Confidence            45799999999999999999999997 66899999999999998888765543211  1111             011 4


Q ss_pred             HHHCCcEEEeCCcEEEEeCCCcEEEeCCCeEEEeccEEeccCCCCCcCCCC-CCCCcCcEEEecCHHHHHHHHHhhhcCC
Q 012165          130 YKEKGIEMIYQDPVTSIDIEKQTLITNSGKLLKYGSLIVATGCTASRFPEK-IGGYLPGVHYIRDVADADALISSLEKAK  208 (469)
Q Consensus       130 ~~~~~i~~~~~~~v~~id~~~~~v~~~~g~~~~yd~lVlAtG~~~~~~~~~-~g~~~~~v~~~~~~~~~~~~~~~~~~~~  208 (469)
                      +++.+++++.+++|+.++++.++|++.+|+++.||+||+|||++|+ .|++ +|.+ ++++++++..+...+.+.+..++
T Consensus        69 ~~~~~v~~~~~~~v~~i~~~~~~v~~~~g~~~~~d~lviAtG~~~~-~~~i~~G~~-~~v~~~~~~~~~~~l~~~~~~~~  146 (408)
T 2gqw_A           69 KRAPEVEWLLGVTAQSFDPQAHTVALSDGRTLPYGTLVLATGAAPR-ALPTLQGAT-MPVHTLRTLEDARRIQAGLRPQS  146 (408)
T ss_dssp             TTSCSCEEEETCCEEEEETTTTEEEETTSCEEECSEEEECCCEEEC-CCGGGTTCS-SCEEECCSHHHHHHHHTTCCTTC
T ss_pred             HHHCCCEEEcCCEEEEEECCCCEEEECCCCEEECCEEEECCCCCCC-CCCccCCCC-CcEEEECCHHHHHHHHHHhhcCC
Confidence            5678999999988999999999999999989999999999999987 4556 7766 78989999988888877666789


Q ss_pred             eEEEEcCChHHHHHHHHHHhCCCeEe-------------------eeHHHHHHcCcEEEcCCeEEEEEeCCCCcEEEEEc
Q 012165          209 KVVVVGGGYIGMEVAAAAVGWKLDTT-------------------RYEQLYQQNGVKFVKGASIKNLEAGSDGRVAAVKL  269 (469)
Q Consensus       209 ~vvVvG~G~~g~e~A~~l~~~g~~v~-------------------~~~~~l~~~gV~~~~~~~v~~i~~~~~~~v~~v~~  269 (469)
                      +++|||+|++|+|+|..|.++|.+|+                   .+.+.+++.||++++++.+++++ +  +   .|++
T Consensus       147 ~vvViGgG~~g~E~A~~l~~~g~~Vtlv~~~~~~l~~~~~~~~~~~l~~~l~~~GV~i~~~~~v~~i~-~--~---~v~~  220 (408)
T 2gqw_A          147 RLLIVGGGVIGLELAATARTAGVHVSLVETQPRLMSRAAPATLADFVARYHAAQGVDLRFERSVTGSV-D--G---VVLL  220 (408)
T ss_dssp             EEEEECCSHHHHHHHHHHHHTTCEEEEEESSSSSSTTTSCHHHHHHHHHHHHHTTCEEEESCCEEEEE-T--T---EEEE
T ss_pred             eEEEECCCHHHHHHHHHHHhCCCEEEEEEeCCcccccccCHHHHHHHHHHHHHcCcEEEeCCEEEEEE-C--C---EEEE
Confidence            99999999999999999999999987                   34567889999999999999998 3  2   5778


Q ss_pred             CCCCEEeCCEEEEccCCccCCchhhhcCCcccCCCEEeCCCCCCCCCceEEeccccccCCccCCcccccchHHHHHHHHH
Q 012165          270 EDGSTIDADTIVIGIGAKPTVSPFERVGLNSSVGGIQVDGQFRTRMPGIFAIGDVAAFPLKMYDRTARVEHVDHARQSAQ  349 (469)
Q Consensus       270 ~~g~~i~~D~vi~a~G~~p~~~~~~~~gl~~~~g~i~Vd~~~~t~~~~Vfa~GD~a~~~~~~~~~~~~~~~~~~A~~~a~  349 (469)
                      ++|+++++|.||+|+|.+|++++++++|++.++ +|.||+++||++|+|||+|||+..+....|...+.+++..|..||+
T Consensus       221 ~~g~~i~~D~vi~a~G~~p~~~l~~~~gl~~~~-gi~Vd~~~~t~~~~IyA~GD~~~~~~~~~g~~~~~~~~~~A~~~g~  299 (408)
T 2gqw_A          221 DDGTRIAADMVVVGIGVLANDALARAAGLACDD-GIFVDAYGRTTCPDVYALGDVTRQRNPLSGRFERIETWSNAQNQGI  299 (408)
T ss_dssp             TTSCEEECSEEEECSCEEECCHHHHHHTCCBSS-SEECCTTCBCSSTTEEECGGGEEEEETTTTEEECCCCHHHHHHHHH
T ss_pred             CCCCEEEcCEEEECcCCCccHHHHHhCCCCCCC-CEEECCCCccCCCCEEEEEEEEEecCccCCceeeccHHHHHHHHHH
Confidence            899999999999999999999999999998874 5999999999999999999999987655555555678899999999


Q ss_pred             HHHHHHhcCCCCCCCCCCceeeecccccCCCcceeeEEeec-CCCcEEEEccCC---CcEEEEEEeCCEEEEEEeecCCh
Q 012165          350 HCIKALLSAQTHTYDYLPYFYSRVFEYEGSPRKVWWQFFGD-NVGETIEIGNFD---PKIATFWIDSGKLKGVLVESGSP  425 (469)
Q Consensus       350 ~~a~~i~~~~~~~~~~~p~~~~~~~~~~g~~~~~~~~~~G~-~~~~~~~~~~~~---~~~~~~~~~~~~l~g~~~~~~~~  425 (469)
                      .+|+||++....+|..+|++|+++|+..       ++.+|. ...+....++.+   ..|.++|+++++|+|+++ .++.
T Consensus       300 ~aa~~i~g~~~~~~~~~p~~~~~~~~~~-------~~~~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~G~~~-~g~~  371 (408)
T 2gqw_A          300 AVARHLVDPTAPGYAELPWYWSDQGALR-------IQVAGLASGDEEIVRGEVSLDAPKFTLIELQKGRIVGATC-VNNA  371 (408)
T ss_dssp             HHHHHHHCTTSCCCCCCCEEEEEETTEE-------EEEEECSCCSEEEEESCCCSSSCCEEEEEEETTEEEEEEE-ESCH
T ss_pred             HHHHHhcCCCCCcCCCCCeEEEEECCce-------EEEECCCCCCEEEEEccCCCCCCeEEEEEEeCCEEEEEEE-ECCh
Confidence            9999999754327888999999999864       777886 222455565553   468899999999999997 6777


Q ss_pred             HHhHHHHHHHhCCCCCChhhhcCCC-cHHHH
Q 012165          426 EEFQLLPTLARSQPFVDKAKLQQAS-SVEEA  455 (469)
Q Consensus       426 ~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~  455 (469)
                      .....++.+++.+..++...+.++. .+.+.
T Consensus       372 ~~~~~~~~~i~~~~~~~~~~l~~~~~~~~~~  402 (408)
T 2gqw_A          372 RDFAPLRRLLAVGAKPDRAALADPATDLRKL  402 (408)
T ss_dssp             HHHHHHHHHHHTTCCCCHHHHHCTTCCHHHH
T ss_pred             HHHHHHHHHHHCCCCCChHHhcCCCCCHHHH
Confidence            7788899999999999988877664 34433

>1m6i_A Programmed cell death protein 8; apoptosis, AIF, oxidoreductase; HET: FAD; 1.80A {Homo sapiens} SCOP: c.3.1.5 c.3.1.5 d.87.1.1 PDB: 3gd3_A* 3gd4_A* 1gv4_A*

Probab=100.00  E-value=1.3e-49  Score=407.74  Aligned_cols=386  Identities=23%  Similarity=0.351  Sum_probs=289.4

Q ss_pred             CCCCCcEEEEcCcHHHHHHHHHHHHcCCCCCcEEEEcCCCCCCCCCCCCcccccCCCCCCCC---CCCCCccccCCCCCC
Q 012165           48 ANENREFVIVGGGNAAGYAARTFVEHGMADGRLCIVSKEAYAPYERPALTKGYLFPLDKKPA---RLPGFHTCVGSGGER  124 (469)
Q Consensus        48 ~~~~~~vvIIGgG~AGl~aA~~L~~~g~~~~~V~vie~~~~~~~~~~~l~~~~~~~~~~~~~---~~~~~~~~~~~~~~~  124 (469)
                      ++.++||||||||+||++||..|++.++ ..+|+|||++++++|.+|++++.++........   +++++.... .....
T Consensus         8 ~~~~~~vvIIGgG~AGl~aA~~L~~~~~-g~~V~lie~~~~~~y~r~~lsk~l~~~~~~~~~~~~~~~~~~~~~-~~~~~   85 (493)
T 1m6i_A            8 APSHVPFLLIGGGTAAFAAARSIRARDP-GARVLIVSEDPELPYMRPPLSKELWFSDDPNVTKTLRFKQWNGKE-RSIYF   85 (493)
T ss_dssp             CCSEEEEEEESCSHHHHHHHHHHHHHST-TCEEEEEESSSSCCBCSGGGGTGGGCC--CTHHHHCEEECTTSCE-EESBS
T ss_pred             CCCcCCEEEECChHHHHHHHHHHHhcCC-CCeEEEEeCCCCCCCCCCCCCHHhhcCCccchhhccccccccccc-ccccc
Confidence            3456899999999999999999999864 669999999999999999988866543221000   000000000 00000


Q ss_pred             CCHhH---------HHHCCcEEEeCCcEEEEeCCCcEEEeCCCeEEEeccEEeccCCCCCcCCCCCCCC----cCcEEEe
Q 012165          125 QTPEW---------YKEKGIEMIYQDPVTSIDIEKQTLITNSGKLLKYGSLIVATGCTASRFPEKIGGY----LPGVHYI  191 (469)
Q Consensus       125 ~~~~~---------~~~~~i~~~~~~~v~~id~~~~~v~~~~g~~~~yd~lVlAtG~~~~~~~~~~g~~----~~~v~~~  191 (469)
                      ...++         +.+.+++++.+++|+.+|++.++|++++|+++.||+||||||++|+.+| .++..    .++++++
T Consensus        86 ~~~~~~~~~~~l~~~~~~gv~~~~g~~v~~id~~~~~V~~~~g~~i~yd~lviATGs~p~~~~-~~~~~~~~~~~~v~~~  164 (493)
T 1m6i_A           86 QPPSFYVSAQDLPHIENGGVAVLTGKKVVQLDVRDNMVKLNDGSQITYEKCLIATGGTPRSLS-AIDRAGAEVKSRTTLF  164 (493)
T ss_dssp             SCGGGSBCTTTTTTSTTCEEEEEETCCEEEEEGGGTEEEETTSCEEEEEEEEECCCEEECCCH-HHHTSCHHHHHTEEEC
T ss_pred             cchHhhcchhhhhhhhcCCeEEEcCCEEEEEECCCCEEEECCCCEEECCEEEECCCCCCCCCC-CcccccccccCceEEE
Confidence            01111         1356899999999999999999999999999999999999999987544 33321    3578888


Q ss_pred             cCHHHHHHHHHhhhcCCeEEEEcCChHHHHHHHHHHh----CCCeEe-------------------eeHHHHHHcCcEEE
Q 012165          192 RDVADADALISSLEKAKKVVVVGGGYIGMEVAAAAVG----WKLDTT-------------------RYEQLYQQNGVKFV  248 (469)
Q Consensus       192 ~~~~~~~~~~~~~~~~~~vvVvG~G~~g~e~A~~l~~----~g~~v~-------------------~~~~~l~~~gV~~~  248 (469)
                      ++..++..+...+..+++++|||+|++|+|+|..|++    .|.+++                   .+.+.+++.||+++
T Consensus       165 ~~~~d~~~l~~~~~~~~~vvViGgG~iG~E~A~~l~~~~~~~g~~V~~v~~~~~~~~~~l~~~~~~~~~~~l~~~GV~v~  244 (493)
T 1m6i_A          165 RKIGDFRSLEKISREVKSITIIGGGFLGSELACALGRKARALGTEVIQLFPEKGNMGKILPEYLSNWTMEKVRREGVKVM  244 (493)
T ss_dssp             CSHHHHHHHHHHHHHCSEEEEECCSHHHHHHHHHHHHHHHHHTCEEEEECSSSSTTTTTSCHHHHHHHHHHHHTTTCEEE
T ss_pred             cCHHHHHHHHHHhhcCCeEEEECCCHHHHHHHHHHHhhhhhcCCEEEEEecCcccccccCCHHHHHHHHHHHHhcCCEEE
Confidence            9998888888777789999999999999999999876    466665                   33567888999999


Q ss_pred             cCCeEEEEEeCCCCcEEEEEcCCCCEEeCCEEEEccCCccCCchhhhcCCccc--CCCEEeCCCCCCCCCceEEeccccc
Q 012165          249 KGASIKNLEAGSDGRVAAVKLEDGSTIDADTIVIGIGAKPTVSPFERVGLNSS--VGGIQVDGQFRTRMPGIFAIGDVAA  326 (469)
Q Consensus       249 ~~~~v~~i~~~~~~~v~~v~~~~g~~i~~D~vi~a~G~~p~~~~~~~~gl~~~--~g~i~Vd~~~~t~~~~Vfa~GD~a~  326 (469)
                      +++.|++++.+ ++.+ .+.+++|+++++|.||+++|.+||+++++++|++.+  +|+|.||++||| .|+|||+|||+.
T Consensus       245 ~~~~V~~i~~~-~~~~-~v~l~dG~~i~aD~Vv~a~G~~pn~~l~~~~gl~~~~~~ggi~Vd~~l~t-~~~IyA~GD~a~  321 (493)
T 1m6i_A          245 PNAIVQSVGVS-SGKL-LIKLKDGRKVETDHIVAAVGLEPNVELAKTGGLEIDSDFGGFRVNAELQA-RSNIWVAGDAAC  321 (493)
T ss_dssp             CSCCEEEEEEE-TTEE-EEEETTSCEEEESEEEECCCEEECCTTHHHHTCCBCTTTCSEECCTTCEE-ETTEEECGGGEE
T ss_pred             eCCEEEEEEec-CCeE-EEEECCCCEEECCEEEECCCCCccHHHHHHcCCccccCCCcEEECCCccc-CCCeeEeeeeEe
Confidence            99999999853 3444 688899999999999999999999999999998876  379999999998 699999999998


Q ss_pred             cCCccCCcccccchHHHHHHHHHHHHHHHhcCCCCCCCCCCceeeecccccCCCc----ceeeEEeecCCC-----c---
Q 012165          327 FPLKMYDRTARVEHVDHARQSAQHCIKALLSAQTHTYDYLPYFYSRVFEYEGSPR----KVWWQFFGDNVG-----E---  394 (469)
Q Consensus       327 ~~~~~~~~~~~~~~~~~A~~~a~~~a~~i~~~~~~~~~~~p~~~~~~~~~~g~~~----~~~~~~~G~~~~-----~---  394 (469)
                      .+....|.. ++++|++|..||+.+|.||++ ...+|...||||++++...+...    ...++.+|....     .   
T Consensus       322 ~~~~~~g~~-~~~~~~~A~~qg~~aa~ni~g-~~~~~~~~~~~~s~~~~~~~~~~~g~~~~~~~~~G~~~~~~~~~~~~~  399 (493)
T 1m6i_A          322 FYDIKLGRR-RVEHHDHAVVSGRLAGENMTG-AAKPYWHQSMFWSDLGPDVGYEAIGLVDSSLPTVGVFAKATAQDNPKS  399 (493)
T ss_dssp             EEETTTEEE-CCCCHHHHHHHHHHHHHHHTS-CCCCCCCCCEEEEESSTTCEEEEEECCCTTSCEEEEEECCCTTCSHHH
T ss_pred             ccCcccCcc-ccchHHHHHHHHHHHHHHhcC-CCCCcCCcCceeeeeccCcceEEEeccCCCcceEEeeccccccccccc
Confidence            765444443 467899999999999999996 45789999999999983211000    001233332100     0   


Q ss_pred             ---------------------EEEE----c-------c-CCCcEEEEEEeCCEEEEEEeecCChHHhHHHHHHHhCCCCC
Q 012165          395 ---------------------TIEI----G-------N-FDPKIATFWIDSGKLKGVLVESGSPEEFQLLPTLARSQPFV  441 (469)
Q Consensus       395 ---------------------~~~~----~-------~-~~~~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~~~  441 (469)
                                           ....    +       + ...+|.+||+++|+|+|+++ +|+++.++.+++||+.+..+
T Consensus       400 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~-~~~~~~~~~~~~li~~~~~~  478 (493)
T 1m6i_A          400 ATEQSGTGIRSESETESEASEITIPPSTPAVPQAPVQGEDYGKGVIFYLRDKVVVGIVL-WNIFNRMPIARKIIKDGEQH  478 (493)
T ss_dssp             HHHHHSCSCHHHHSCSCCCC--------------------CCEEEEEEEETTEEEEEEE-ESCCSCHHHHHHHHHHCCBC
T ss_pred             ccccccccccccccccccccccccccccccccccccccccCCcEEEEEEeCCEEEEEEE-ecCcchHHHHHHHHhCCCCC
Confidence                                 0000    0       1 12456889999999999996 89999999999999888765


Q ss_pred             C
Q 012165          442 D  442 (469)
Q Consensus       442 ~  442 (469)
                      +
T Consensus       479 ~  479 (493)
T 1m6i_A          479 E  479 (493)
T ss_dssp             S
T ss_pred             C
Confidence            4

>4eqs_A Coenzyme A disulfide reductase; oxidoreductase; HET: COA FAD; 1.50A {Staphylococcus aureus subsp} PDB: 1yqz_A* 4eqw_A* 4em4_A* 4em3_A* 4eqr_A* 4emw_A* 4eqx_A*

Probab=100.00  E-value=8.5e-47  Score=381.02  Aligned_cols=374  Identities=21%  Similarity=0.286  Sum_probs=284.5

Q ss_pred             CcEEEEcCcHHHHHHHHHHHHcCCCCCcEEEEcCCCCCCCCCCCCcccccCCCC-CCCCCCCCCccccCCCCCCCCHhHH
Q 012165           52 REFVIVGGGNAAGYAARTFVEHGMADGRLCIVSKEAYAPYERPALTKGYLFPLD-KKPARLPGFHTCVGSGGERQTPEWY  130 (469)
Q Consensus        52 ~~vvIIGgG~AGl~aA~~L~~~g~~~~~V~vie~~~~~~~~~~~l~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~  130 (469)
                      ++|||||||+||++||.+|++.|+ +.+|+|||++++.+|.++.+++. +.... .....+           .....+++
T Consensus         1 PKVvIIG~G~AGl~aA~~l~~~g~-~~~V~lie~~~~~~~~~~~l~~~-~~~~~~~~~~~~-----------~~~~~~~~   67 (437)
T 4eqs_A            1 PKIVVVGAVAGGATCASQIRRLDK-ESDIIIFEKDRDMSFANCALPYV-IGEVVEDRRYAL-----------AYTPEKFY   67 (437)
T ss_dssp             CCEEEECCSTTHHHHHHHHHHHCS-SSCEEEEESSSCSSBCGGGHHHH-HTTSSCCGGGTB-----------CCCHHHHH
T ss_pred             CeEEEECCCHHHHHHHHHHHhCCC-CCcEEEEeCCCCCCCCcchhHHH-HcCCccchhhhh-----------hcCHHHHH
Confidence            379999999999999999999986 77899999999999998877652 22111 111111           12446778


Q ss_pred             HHCCcEEEeCCcEEEEeCCCcEEEeCC-----CeEEEeccEEeccCCCCCcCCCCCCCCcCcEEEecCHHHHHHHHHhhh
Q 012165          131 KEKGIEMIYQDPVTSIDIEKQTLITNS-----GKLLKYGSLIVATGCTASRFPEKIGGYLPGVHYIRDVADADALISSLE  205 (469)
Q Consensus       131 ~~~~i~~~~~~~v~~id~~~~~v~~~~-----g~~~~yd~lVlAtG~~~~~~~~~~g~~~~~v~~~~~~~~~~~~~~~~~  205 (469)
                      ++.+++++.+++|+.+|.+.+.+.+.+     +.++.||+||||||++|+. |.+++   ++++++++..++..+.+.+.
T Consensus        68 ~~~~i~~~~~~~V~~id~~~~~~~~~~~~~~~~~~~~yd~lVIATGs~p~~-p~i~g---~~~~~~~~~~~~~~l~~~~~  143 (437)
T 4eqs_A           68 DRKQITVKTYHEVIAINDERQTVSVLNRKTNEQFEESYDKLILSPGASANS-LGFES---DITFTLRNLEDTDAIDQFIK  143 (437)
T ss_dssp             HHHCCEEEETEEEEEEETTTTEEEEEETTTTEEEEEECSEEEECCCEEECC-CCCCC---TTEECCSSHHHHHHHHHHHH
T ss_pred             HhcCCEEEeCCeEEEEEccCcEEEEEeccCCceEEEEcCEEEECCCCcccc-ccccC---ceEEeeccHHHHHHHHHhhh
Confidence            899999999999999999998776643     2468999999999999874 44444   56788888888887766543


Q ss_pred             --cCCeEEEEcCChHHHHHHHHHHhCCCeEe------------------eeHHHHHHcCcEEEcCCeEEEEEeCCCCcEE
Q 012165          206 --KAKKVVVVGGGYIGMEVAAAAVGWKLDTT------------------RYEQLYQQNGVKFVKGASIKNLEAGSDGRVA  265 (469)
Q Consensus       206 --~~~~vvVvG~G~~g~e~A~~l~~~g~~v~------------------~~~~~l~~~gV~~~~~~~v~~i~~~~~~~v~  265 (469)
                        .+++++|||+|++|+|+|..+.++|.+|+                  .+.+.++++||++++++.+++++..      
T Consensus       144 ~~~~~~vvViGgG~ig~E~A~~l~~~g~~Vtlv~~~~~ll~~~d~~~~~~~~~~l~~~gV~i~~~~~v~~~~~~------  217 (437)
T 4eqs_A          144 ANQVDKVLVVGAGYVSLEVLENLYERGLHPTLIHRSDKINKLMDADMNQPILDELDKREIPYRLNEEINAINGN------  217 (437)
T ss_dssp             HHTCCEEEEECCSHHHHHHHHHHHHHTCEEEEEESSSCCSTTSCGGGGHHHHHHHHHTTCCEEESCCEEEEETT------
T ss_pred             ccCCcEEEEECCccchhhhHHHHHhcCCcceeeeeeccccccccchhHHHHHHHhhccceEEEeccEEEEecCC------
Confidence              47899999999999999999999999998                  5678899999999999999998732      


Q ss_pred             EEEcCCCCEEeCCEEEEccCCccCCchhhhcCCccc-CCCEEeCCCCCCCCCceEEeccccccCCccCCcccccchHHHH
Q 012165          266 AVKLEDGSTIDADTIVIGIGAKPTVSPFERVGLNSS-VGGIQVDGQFRTRMPGIFAIGDVAAFPLKMYDRTARVEHVDHA  344 (469)
Q Consensus       266 ~v~~~~g~~i~~D~vi~a~G~~p~~~~~~~~gl~~~-~g~i~Vd~~~~t~~~~Vfa~GD~a~~~~~~~~~~~~~~~~~~A  344 (469)
                      .+.+++|+++++|.|++++|++||+++++.+|++.+ +|+|.||+++||++|||||+|||+..+....+.......+..|
T Consensus       218 ~v~~~~g~~~~~D~vl~a~G~~Pn~~~~~~~gl~~~~~G~I~vd~~~~Ts~p~IyA~GDva~~~~~~~~~~~~~~~a~~A  297 (437)
T 4eqs_A          218 EITFKSGKVEHYDMIIEGVGTHPNSKFIESSNIKLDRKGFIPVNDKFETNVPNIYAIGDIATSHYRHVDLPASVPLAWGA  297 (437)
T ss_dssp             EEEETTSCEEECSEEEECCCEEESCGGGTTSSCCCCTTSCEECCTTCBCSSTTEEECGGGEEEEBSSSSSEECCCSHHHH
T ss_pred             eeeecCCeEEeeeeEEEEeceecCcHHHHhhhhhhccCCcEecCCCccCCCCCEEEEEEccCcccccCCccccchhHHHH
Confidence            578899999999999999999999999999999876 5779999999999999999999999887766766666778889


Q ss_pred             HHHHHHHHHHHhcCCCCCCC-CCCceeeecccccCCCcceeeEEeecCCCc-------EEE--EccC-------CCcEEE
Q 012165          345 RQSAQHCIKALLSAQTHTYD-YLPYFYSRVFEYEGSPRKVWWQFFGDNVGE-------TIE--IGNF-------DPKIAT  407 (469)
Q Consensus       345 ~~~a~~~a~~i~~~~~~~~~-~~p~~~~~~~~~~g~~~~~~~~~~G~~~~~-------~~~--~~~~-------~~~~~~  407 (469)
                      .+||+.+|+||++....++. ..+..+...++.+       +..+|.++.+       ...  ....       ...+.|
T Consensus       298 ~~~g~~~a~ni~g~~~~~~~~~~~~~~~~~~~p~-------ia~vGlte~~a~~~~~~~~~~~~~~~~~~~~~~~~g~~K  370 (437)
T 4eqs_A          298 HRAASIVAEQIAGNDTIEFKGFLGNNIVKFFDYT-------FASVGVKPNELKQFDYKMVEVTQGAHANYYPGNSPLHLR  370 (437)
T ss_dssp             HHHHHHHHHHHHSCTTCCCCCBCCCEEEEETTEE-------EEEEESCGGGGGGSCEEEEEEEEESSCTTSSSCCEEEEE
T ss_pred             HHHHHHHHHHHcCCCCcccccceeEEeeeeccce-------EEEeeCCHHHHHhCCceEEEEecCCchhhcCCCCcEEEE
Confidence            99999999999986554442 3333333333222       4556654321       111  1110       112667


Q ss_pred             EEEe--CCEEEEEEeecCC-hHHhHH-HHHHHhCCCCCCh-hhh--cCCCcHHHH
Q 012165          408 FWID--SGKLKGVLVESGS-PEEFQL-LPTLARSQPFVDK-AKL--QQASSVEEA  455 (469)
Q Consensus       408 ~~~~--~~~l~g~~~~~~~-~~~~~~-~~~~~~~~~~~~~-~~~--~~~~~~~~~  455 (469)
                      ++++  +++|+|+++++.+ ++++.. +..+|+.+.+++. ..+  ..||+++++
T Consensus       371 li~d~~~~~ilGa~~~g~~~a~e~i~~~~~ai~~~~t~~~l~~~~~~yhP~~s~~  425 (437)
T 4eqs_A          371 VYYDTSNRQILRAAAVGKEGADKRIDVLSMAMMNQLTVDELTEFEVAFAPPYSHP  425 (437)
T ss_dssp             EEEETTTCBEEEEEEEESSSHHHHHHHHHHHHHTTCBGGGGGGCCCCCCTTTCCS
T ss_pred             EEEECCCCEEEEEEEECcCCHHHHHHHHHHHHHcCCcHHHHhcCccccCCCCCch
Confidence            7774  5899999987654 665544 5556788887763 222  346777654

>1xhc_A NADH oxidase /nitrite reductase; southe collaboratory for structural genomics, secsg, hyperthermoph protein structure initiative, PSI; HET: FAD; 2.35A {Pyrococcus furiosus} SCOP: c.3.1.5 c.3.1.5 d.87.1.1

Probab=100.00  E-value=5.1e-46  Score=367.03  Aligned_cols=337  Identities=24%  Similarity=0.401  Sum_probs=264.0

Q ss_pred             CcEEEEcCcHHHHHHHHHHHHcCCCCCcEEEEcCCCCCCCCCCCCcccccCCCCCCCCCCCCCccccCCCCCCCCHhHHH
Q 012165           52 REFVIVGGGNAAGYAARTFVEHGMADGRLCIVSKEAYAPYERPALTKGYLFPLDKKPARLPGFHTCVGSGGERQTPEWYK  131 (469)
Q Consensus        52 ~~vvIIGgG~AGl~aA~~L~~~g~~~~~V~vie~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  131 (469)
                      .|++|||||+||++||..|++.|    +|+|||+++..+|.++.+++ ++... .....+           .....++++
T Consensus         9 ~~vvIIGgG~AGl~aA~~l~~~g----~V~lie~~~~~~~~~~~l~~-~~~g~-~~~~~~-----------~~~~~~~~~   71 (367)
T 1xhc_A            9 SKVVIVGNGPGGFELAKQLSQTY----EVTVIDKEPVPYYSKPMLSH-YIAGF-IPRNRL-----------FPYSLDWYR   71 (367)
T ss_dssp             CEEEEECCSHHHHHHHHHHTTTS----EEEEECSSSSCCCCSTTHHH-HHTTS-SCGGGG-----------CSSCHHHHH
T ss_pred             CcEEEECCcHHHHHHHHHHhhcC----CEEEEECCCCCccccchhHH-HHhCC-CCHHHh-----------ccCCHHHHH
Confidence            58999999999999999998875    79999999998888887765 23211 111111           234677889


Q ss_pred             HCCcEEEeCCcEEEEeCCCcEEEeCCCeEEEeccEEeccCCCCCcCCCCCCCCcCcEEEecCHHHHHHHHHhhhcCCeEE
Q 012165          132 EKGIEMIYQDPVTSIDIEKQTLITNSGKLLKYGSLIVATGCTASRFPEKIGGYLPGVHYIRDVADADALISSLEKAKKVV  211 (469)
Q Consensus       132 ~~~i~~~~~~~v~~id~~~~~v~~~~g~~~~yd~lVlAtG~~~~~~~~~~g~~~~~v~~~~~~~~~~~~~~~~~~~~~vv  211 (469)
                      +.+++++.+++|+.+|++.++|+ .+++++.||+||||||++|+ .|+++|  .++++++++..+...+.+.+.++++++
T Consensus        72 ~~~v~~~~g~~v~~id~~~~~V~-~~g~~~~~d~lViATGs~p~-~p~i~G--~~~v~~~~~~~~~~~l~~~~~~~~~vv  147 (367)
T 1xhc_A           72 KRGIEIRLAEEAKLIDRGRKVVI-TEKGEVPYDTLVLATGARAR-EPQIKG--KEYLLTLRTIFDADRIKESIENSGEAI  147 (367)
T ss_dssp             HHTEEEECSCCEEEEETTTTEEE-ESSCEEECSEEEECCCEEEC-CCCSBT--GGGEECCCSHHHHHHHHHHHHHHSEEE
T ss_pred             hCCcEEEECCEEEEEECCCCEEE-ECCcEEECCEEEECCCCCCC-CCCCCC--cCCEEEEcCHHHHHHHHHHhhcCCcEE
Confidence            99999999988999999988888 67888999999999999987 455676  577888888888888777666779999


Q ss_pred             EEcCChHHHHHHHHHHhCCCeEe-----------------eeHHHHHHcCcEEEcCCeEEEEEeCCCCcEEEEEcCCCCE
Q 012165          212 VVGGGYIGMEVAAAAVGWKLDTT-----------------RYEQLYQQNGVKFVKGASIKNLEAGSDGRVAAVKLEDGST  274 (469)
Q Consensus       212 VvG~G~~g~e~A~~l~~~g~~v~-----------------~~~~~l~~~gV~~~~~~~v~~i~~~~~~~v~~v~~~~g~~  274 (469)
                      |||+|++|+|+|..|+++|.+|+                 .+.+.+++.||++++++++++++.  +    .+.+++|+ 
T Consensus       148 ViGgG~~g~E~A~~l~~~g~~Vtlv~~~~~~l~~~~~~~~~l~~~l~~~gV~i~~~~~v~~i~~--~----~v~~~~g~-  220 (367)
T 1xhc_A          148 IIGGGFIGLELAGNLAEAGYHVKLIHRGAMFLGLDEELSNMIKDMLEETGVKFFLNSELLEANE--E----GVLTNSGF-  220 (367)
T ss_dssp             EEECSHHHHHHHHHHHHTTCEEEEECSSSCCTTCCHHHHHHHHHHHHHTTEEEECSCCEEEECS--S----EEEETTEE-
T ss_pred             EECCCHHHHHHHHHHHhCCCEEEEEeCCCeeccCCHHHHHHHHHHHHHCCCEEEcCCEEEEEEe--e----EEEECCCE-
Confidence            99999999999999999999998                 235678899999999999999972  1    47788887 


Q ss_pred             EeCCEEEEccCCccCCchhhhcCCcccCCCEEeCCCCCCCCCceEEeccccccCCccCCcccccchHHHHHHHHHHHHHH
Q 012165          275 IDADTIVIGIGAKPTVSPFERVGLNSSVGGIQVDGQFRTRMPGIFAIGDVAAFPLKMYDRTARVEHVDHARQSAQHCIKA  354 (469)
Q Consensus       275 i~~D~vi~a~G~~p~~~~~~~~gl~~~~g~i~Vd~~~~t~~~~Vfa~GD~a~~~~~~~~~~~~~~~~~~A~~~a~~~a~~  354 (469)
                      +++|.||+|+|++||++++++++++.+ ++|.||+++||+.|+|||+|||+..+...      ...+..|..||+.+|+|
T Consensus       221 i~~D~vi~a~G~~p~~~ll~~~gl~~~-~gi~Vd~~~~t~~~~IyA~GD~a~~~~~~------~~~~~~A~~qg~~aa~~  293 (367)
T 1xhc_A          221 IEGKVKICAIGIVPNVDLARRSGIHTG-RGILIDDNFRTSAKDVYAIGDCAEYSGII------AGTAKAAMEQARVLADI  293 (367)
T ss_dssp             EECSCEEEECCEEECCHHHHHTTCCBS-SSEECCTTSBCSSTTEEECGGGEEBTTBC------CCSHHHHHHHHHHHHHH
T ss_pred             EEcCEEEECcCCCcCHHHHHhCCCCCC-CCEEECCCcccCCCCEEEeEeeeecCCCC------ccHHHHHHHHHHHHHHH
Confidence            999999999999999999999999887 56999999999999999999999753321      12677899999999999


Q ss_pred             HhcCCCCCCCCCCceee-ecccccCCCcceeeEEeecCCCcEEEEccCCCcEEEEEEeCCEEEEEEeecCChHHhHHHHH
Q 012165          355 LLSAQTHTYDYLPYFYS-RVFEYEGSPRKVWWQFFGDNVGETIEIGNFDPKIATFWIDSGKLKGVLVESGSPEEFQLLPT  433 (469)
Q Consensus       355 i~~~~~~~~~~~p~~~~-~~~~~~g~~~~~~~~~~G~~~~~~~~~~~~~~~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~  433 (469)
                      |++. ..+|...+.+|+ .+++..       +..+|....+....    ..|.++++++++|+|+++ .+.......+++
T Consensus       294 i~g~-~~~~~~~~~~~~~~~~~~~-------~~~vG~~~~~~~~~----~~~~k~~~~~~~ilG~~~-~g~~~~~~~~~~  360 (367)
T 1xhc_A          294 LKGE-PRRYNFKFRSTVFKFGKLQ-------IAIIGNTKGEGKWI----EDNTKVFYENGKIIGAVV-FNDIRKATKLEK  360 (367)
T ss_dssp             HTTC-CCCCCSSCCEEEEEETTEE-------EEEEECCSSCEEEE----ETTEEEEC-----CEEEE-ESCHHHHHHHC-
T ss_pred             hcCC-CccCCCCCCceEEEECCce-------EEEECCCCCCCccc----ceEEEEEEECCEEEEEEE-ECChHHHHHHHH
Confidence            9964 456666555554 444432       67788766532211    346788888999999997 677777888887


Q ss_pred             HHh
Q 012165          434 LAR  436 (469)
Q Consensus       434 ~~~  436 (469)
                      ++.
T Consensus       361 ~i~  363 (367)
T 1xhc_A          361 EIL  363 (367)
T ss_dssp             ---
T ss_pred             HHh
Confidence            763

>2cdu_A NADPH oxidase; flavoenzyme, oxidoreductase; HET: FAD ADP; 1.8A {Lactobacillus sanfranciscensis}

Probab=100.00  E-value=3.3e-46  Score=379.27  Aligned_cols=382  Identities=20%  Similarity=0.271  Sum_probs=290.3

Q ss_pred             CcEEEEcCcHHHHHHHHHHHHcCCCCCcEEEEcCCCCCCCCCCCCcccccCCCCC--CCCCCCCCccccCCCCCCCCHhH
Q 012165           52 REFVIVGGGNAAGYAARTFVEHGMADGRLCIVSKEAYAPYERPALTKGYLFPLDK--KPARLPGFHTCVGSGGERQTPEW  129 (469)
Q Consensus        52 ~~vvIIGgG~AGl~aA~~L~~~g~~~~~V~vie~~~~~~~~~~~l~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~  129 (469)
                      +||+|||||+||+++|..|++.+. ..+|+|||+++..+|....+.. ++.....  ....+           .....++
T Consensus         1 ~dvvIIGgG~aGl~aA~~l~~~~~-g~~V~lie~~~~~~~~~~~~~~-~~~g~~~~~~~~~~-----------~~~~~~~   67 (452)
T 2cdu_A            1 MKVIVVGCTHAGTFAVKQTIADHP-DADVTAYEMNDNISFLSCGIAL-YLGKEIKNNDPRGL-----------FYSSPEE   67 (452)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHHCT-TCEEEEEESSSCCCBCGGGHHH-HHTTCBGGGCGGGG-----------BSCCHHH
T ss_pred             CeEEEECCCHHHHHHHHHHHhhCc-CCcEEEEECCCCCCcccccchh-hhcCCcccCCHHHh-----------hhcCHHH
Confidence            489999999999999999999832 3489999999877665433221 1111100  01111           2345677


Q ss_pred             HHHCCcEEEeCCcEEEEeCCCcEEEeCC-----CeEEEeccEEeccCCCCCcCCCCCCCCcCcEEEecCHHHHHHHHHhh
Q 012165          130 YKEKGIEMIYQDPVTSIDIEKQTLITNS-----GKLLKYGSLIVATGCTASRFPEKIGGYLPGVHYIRDVADADALISSL  204 (469)
Q Consensus       130 ~~~~~i~~~~~~~v~~id~~~~~v~~~~-----g~~~~yd~lVlAtG~~~~~~~~~~g~~~~~v~~~~~~~~~~~~~~~~  204 (469)
                      +++.+++++.+++|..++.+.+++.+.+     +.++.||+||+|||++|+ .|.++|.+.+++++++++.+...+.+..
T Consensus        68 ~~~~gv~~~~~~~v~~i~~~~~~v~v~~~~~g~~~~~~~d~lviAtGs~p~-~p~i~g~~~~~v~~~~~~~~~~~~~~~~  146 (452)
T 2cdu_A           68 LSNLGANVQMRHQVTNVDPETKTIKVKDLITNEEKTEAYDKLIMTTGSKPT-VPPIPGIDSSRVYLCKNYNDAKKLFEEA  146 (452)
T ss_dssp             HHHTTCEEEESEEEEEEEGGGTEEEEEETTTCCEEEEECSEEEECCCEEEC-CCCCTTTTSTTEEECSSHHHHHHHHHHG
T ss_pred             HHHcCCEEEeCCEEEEEEcCCCEEEEEecCCCceEEEECCEEEEccCCCcC-CCCCCCCCCCCEEEeCcHHHHHHHHHHh
Confidence            8899999989888999998888887753     567999999999999987 5667787677899999999998888888


Q ss_pred             hcCCeEEEEcCChHHHHHHHHHHhCCCeEe-------------------eeHHHHHHcCcEEEcCCeEEEEEeCCCCcEE
Q 012165          205 EKAKKVVVVGGGYIGMEVAAAAVGWKLDTT-------------------RYEQLYQQNGVKFVKGASIKNLEAGSDGRVA  265 (469)
Q Consensus       205 ~~~~~vvVvG~G~~g~e~A~~l~~~g~~v~-------------------~~~~~l~~~gV~~~~~~~v~~i~~~~~~~v~  265 (469)
                      ..+++++|||+|++|+|+|..|.++|.+|+                   .+.+.+++.||++++++.|++++.. ++.+.
T Consensus       147 ~~~~~vvViGgG~~g~E~A~~l~~~g~~Vtlv~~~~~~l~~~~~~~~~~~l~~~l~~~Gv~i~~~~~v~~i~~~-~~~v~  225 (452)
T 2cdu_A          147 PKAKTITIIGSGYIGAELAEAYSNQNYNVNLIDGHERVLYKYFDKEFTDILAKDYEAHGVNLVLGSKVAAFEEV-DDEII  225 (452)
T ss_dssp             GGCSEEEEECCSHHHHHHHHHHHTTTCEEEEEESSSSTTTTTSCHHHHHHHHHHHHHTTCEEEESSCEEEEEEE-TTEEE
T ss_pred             ccCCeEEEECcCHHHHHHHHHHHhcCCEEEEEEcCCchhhhhhhhhHHHHHHHHHHHCCCEEEcCCeeEEEEcC-CCeEE
Confidence            889999999999999999999999999987                   3467788999999999999999853 45555


Q ss_pred             EEEcCCCCEEeCCEEEEccCCccCCchhhhcCCccc-CCCEEeCCCCCCCCCceEEeccccccCCccCCcccccchHHHH
Q 012165          266 AVKLEDGSTIDADTIVIGIGAKPTVSPFERVGLNSS-VGGIQVDGQFRTRMPGIFAIGDVAAFPLKMYDRTARVEHVDHA  344 (469)
Q Consensus       266 ~v~~~~g~~i~~D~vi~a~G~~p~~~~~~~~gl~~~-~g~i~Vd~~~~t~~~~Vfa~GD~a~~~~~~~~~~~~~~~~~~A  344 (469)
                      .+.+ +|+++++|.||+|+|++|++++++.. ++.+ +|+|.||+++||+.|+|||+|||+..+....+...+...+..|
T Consensus       226 ~v~~-~g~~i~~D~vv~a~G~~p~~~ll~~~-l~~~~~G~i~Vd~~~~t~~~~IyA~GD~~~~~~~~~g~~~~~~~~~~A  303 (452)
T 2cdu_A          226 TKTL-DGKEIKSDIAILCIGFRPNTELLKGK-VAMLDNGAIITDEYMHSSNRDIFAAGDSAAVHYNPTNSNAYIPLATNA  303 (452)
T ss_dssp             EEET-TSCEEEESEEEECCCEEECCGGGTTT-SCBCTTSCBCCCTTSBCSSTTEEECSTTBCEEETTTTEEECCCCHHHH
T ss_pred             EEEe-CCCEEECCEEEECcCCCCCHHHHHHh-hhcCCCCCEEECCCcCcCCCCEEEcceEEEeccccCCCeeecchHHHH
Confidence            5665 78899999999999999999988877 7764 5779999999999999999999998765444444445678889


Q ss_pred             HHHHHHHHHHHhcCCCCCC-CCCCceeeecccccCCCcceeeEEeecCCC-------cEEE-----Ecc--C--C--CcE
Q 012165          345 RQSAQHCIKALLSAQTHTY-DYLPYFYSRVFEYEGSPRKVWWQFFGDNVG-------ETIE-----IGN--F--D--PKI  405 (469)
Q Consensus       345 ~~~a~~~a~~i~~~~~~~~-~~~p~~~~~~~~~~g~~~~~~~~~~G~~~~-------~~~~-----~~~--~--~--~~~  405 (469)
                      ..||+.+|+||++.. .++ ...|++|+.+|+..       +..+|....       +...     ...  .  .  ..+
T Consensus       304 ~~~g~~aa~~i~g~~-~~~~~~~~~~~~~~~~~~-------~~~vG~~~~~a~~~g~~~~~~~~~~~~~~~~~~~~~~~~  375 (452)
T 2cdu_A          304 VRQGRLVGLNLTEDK-VKDMGTQSSSGLKLYGRT-------YVSTGINTALAKANNLKVSEVIIADNYRPEFMLSTDEVL  375 (452)
T ss_dssp             HHHHHHHHHTSSSCC-CCCCCBCCCEEEEETTEE-------EEEEECCHHHHHHTTCCCEEEEEEEESSCTTBSCCCEEE
T ss_pred             HHHHHHHHHHhCCCC-CcCCCccceEEEEECCee-------eEeecCCHHHHHHcCCceEEEEEecCCccccCCCCceEE
Confidence            999999999999643 334 44678889888643       666776532       1111     011  0  1  236


Q ss_pred             EEEEEe--CCEEEEEEeecC-ChHH-hHHHHHHHhCCCCCChhh---hcCCCcHHHHHHH
Q 012165          406 ATFWID--SGKLKGVLVESG-SPEE-FQLLPTLARSQPFVDKAK---LQQASSVEEALEI  458 (469)
Q Consensus       406 ~~~~~~--~~~l~g~~~~~~-~~~~-~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~  458 (469)
                      .|++++  +++|+|+++++. ++.+ +..+..+|+.+.+++.-.   +..||++.|++..
T Consensus       376 ~k~~~~~~~~~ilG~~~~g~~~~~~~i~~~~~ai~~~~~~~~l~~~~~~~~Pt~~e~~~~  435 (452)
T 2cdu_A          376 MSLVYDPKTRVILGGALSSMHDVSQSANVLSVCIQNKNTIDDLAMVDMLFQPQFDRPFNY  435 (452)
T ss_dssp             EEEEECTTTCBEEEEEEEESSCCHHHHHHHHHHHHTTCBHHHHHHSCCCCCTTTCCSSCH
T ss_pred             EEEEEECCCCEEEEEEEEcCccHHHHHHHHHHHHHcCCCHHHHhhhhhccCCCCCchHHH
Confidence            677774  599999998766 4544 455677788888776432   3568888885443

>3oc4_A Oxidoreductase, pyridine nucleotide-disulfide FAM; structural genomics, PSI-2, protein structure initiative; HET: FAD; 2.60A {Enterococcus faecalis}

Probab=100.00  E-value=1.6e-45  Score=374.22  Aligned_cols=377  Identities=19%  Similarity=0.222  Sum_probs=279.6

Q ss_pred             CcEEEEcCcHHHHHHHHHHHHcCCCCCcEEEEcCCCCCCCCCCCCcccccCCCCCCCCCCCCCccccCCCCCCCCHhHHH
Q 012165           52 REFVIVGGGNAAGYAARTFVEHGMADGRLCIVSKEAYAPYERPALTKGYLFPLDKKPARLPGFHTCVGSGGERQTPEWYK  131 (469)
Q Consensus        52 ~~vvIIGgG~AGl~aA~~L~~~g~~~~~V~vie~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  131 (469)
                      +||+|||||+||++||.+|++.+. ..+|+|||+++..+|.++.+.. ++.........+           .....+++.
T Consensus         3 ~~VvIIGgG~AGl~aA~~L~~~~~-g~~V~vie~~~~~g~~~~~~~~-~~~~~~~~~~~~-----------~~~~~~~~~   69 (452)
T 3oc4_A            3 LKIVIIGASFAGISAAIASRKKYP-QAEISLIDKQATVGYLSGGLSA-YFNHTINELHEA-----------RYITEEELR   69 (452)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHHCS-SSEEEEECSSSCCSSCCC----------------------------CCCCHHHHH
T ss_pred             CCEEEECCCHHHHHHHHHHHhhCc-CCcEEEEECCCCCcccCccchh-hhcCCCCCHHHh-----------hcCCHHHHH
Confidence            699999999999999999999843 4589999999998887554432 222111111111           234678889


Q ss_pred             HCCcEEEeCCcEEEEeCCCcEEEeC---CCeEEEeccEEeccCCCCCcCCCCCCCCcCcEEEecCHHHHHHHHHhhhcCC
Q 012165          132 EKGIEMIYQDPVTSIDIEKQTLITN---SGKLLKYGSLIVATGCTASRFPEKIGGYLPGVHYIRDVADADALISSLEKAK  208 (469)
Q Consensus       132 ~~~i~~~~~~~v~~id~~~~~v~~~---~g~~~~yd~lVlAtG~~~~~~~~~~g~~~~~v~~~~~~~~~~~~~~~~~~~~  208 (469)
                      +.+++++.+++|+.++++.+.+.+.   ++.++.||+||||||++|. .|+++|.+.+++++.++..+...+.+....++
T Consensus        70 ~~gi~~~~~~~V~~id~~~~~v~v~~~~~~~~~~~d~lviAtG~~p~-~p~i~g~~~~~v~~~~~~~~~~~~~~~~~~~~  148 (452)
T 3oc4_A           70 RQKIQLLLNREVVAMDVENQLIAWTRKEEQQWYSYDKLILATGASQF-STQIRGSQTEKLLKYKFLSGALAAVPLLENSQ  148 (452)
T ss_dssp             HTTEEEECSCEEEEEETTTTEEEEEETTEEEEEECSEEEECCCCCBC-CCCCBTTTCTTEEEGGGCC----CCHHHHTCS
T ss_pred             HCCCEEEECCEEEEEECCCCEEEEEecCceEEEEcCEEEECCCcccC-CCCCCCCCCCCEEEeCCHHHHHHHHHHHhcCC
Confidence            9999999999999999999888763   5567999999999999987 56678877788888877777766666667899


Q ss_pred             eEEEEcCChHHHHHHHHHHhCCCeEe-------------------eeHHHHHHcCcEEEcCCeEEEEEeCCCCcEEEEEc
Q 012165          209 KVVVVGGGYIGMEVAAAAVGWKLDTT-------------------RYEQLYQQNGVKFVKGASIKNLEAGSDGRVAAVKL  269 (469)
Q Consensus       209 ~vvVvG~G~~g~e~A~~l~~~g~~v~-------------------~~~~~l~~~gV~~~~~~~v~~i~~~~~~~v~~v~~  269 (469)
                      +++|||+|.+|+|+|..+.++|.+++                   .+.+.+++.||++++++.|++++.. ++.+ .+.+
T Consensus       149 ~vvViGgG~~g~E~A~~l~~~g~~Vtlv~~~~~~l~~~~d~~~~~~l~~~l~~~GV~i~~~~~v~~i~~~-~~~v-~v~~  226 (452)
T 3oc4_A          149 TVAVIGAGPIGMEAIDFLVKMKKTVHVFESLENLLPKYFDKEMVAEVQKSLEKQAVIFHFEETVLGIEET-ANGI-VLET  226 (452)
T ss_dssp             EEEEECCSHHHHHHHHHHHHTTCEEEEEESSSSSSTTTCCHHHHHHHHHHHHTTTEEEEETCCEEEEEEC-SSCE-EEEE
T ss_pred             EEEEECCCHHHHHHHHHHHhCCCeEEEEEccCccccccCCHHHHHHHHHHHHHcCCEEEeCCEEEEEEcc-CCeE-EEEE
Confidence            99999999999999999999999987                   3567788899999999999999854 4455 6777


Q ss_pred             CCCCEEeCCEEEEccCCccCCchhhhcCCccc-CCCEEeCCCCCCCCCceEEeccccccCCccCCcccccchHHHHHHHH
Q 012165          270 EDGSTIDADTIVIGIGAKPTVSPFERVGLNSS-VGGIQVDGQFRTRMPGIFAIGDVAAFPLKMYDRTARVEHVDHARQSA  348 (469)
Q Consensus       270 ~~g~~i~~D~vi~a~G~~p~~~~~~~~gl~~~-~g~i~Vd~~~~t~~~~Vfa~GD~a~~~~~~~~~~~~~~~~~~A~~~a  348 (469)
                      ++| ++++|.||+|+|++|++++++.. +..+ +|+|.||+++||+.|+|||+|||+..+....+.......+..|..+|
T Consensus       227 ~~g-~i~aD~Vv~A~G~~p~~~~l~~~-~~~~~~g~i~vd~~~~t~~~~IyA~GD~~~~~~~~~~~~~~~~~~~~A~~~g  304 (452)
T 3oc4_A          227 SEQ-EISCDSGIFALNLHPQLAYLDKK-IQRNLDQTIAVDAYLQTSVPNVFAIGDCISVMNEPVAETFYAPLVNNAVRTG  304 (452)
T ss_dssp             SSC-EEEESEEEECSCCBCCCSSCCTT-SCBCTTSCBCCCTTCBCSSTTEEECGGGBCEEEGGGTEEECCCCHHHHHHHH
T ss_pred             CCC-EEEeCEEEECcCCCCChHHHHhh-hccCCCCCEEECcCccCCCCCEEEEEeeEEeccccCCceeecchHHHHHHHH
Confidence            777 89999999999999999988664 6654 67899999999999999999999987654444433345677899999


Q ss_pred             HHHHHHHhcCCCCCCC-CCCceeeecccccCCCcceeeEEeecCCCc-------EE--EEc-------cCCCcEEEEEEe
Q 012165          349 QHCIKALLSAQTHTYD-YLPYFYSRVFEYEGSPRKVWWQFFGDNVGE-------TI--EIG-------NFDPKIATFWID  411 (469)
Q Consensus       349 ~~~a~~i~~~~~~~~~-~~p~~~~~~~~~~g~~~~~~~~~~G~~~~~-------~~--~~~-------~~~~~~~~~~~~  411 (469)
                      +.+|+||++.. ..+. ..+..++.+|+.+       +..+|.++.+       ..  ...       +....|.|+.++
T Consensus       305 ~~aa~~i~g~~-~~~~~~~~~~~~~~~~~~-------~a~vG~te~~a~~~g~~~~~~~~~~~~~~~~~~~~~~~kli~~  376 (452)
T 3oc4_A          305 LVVANNLEEKT-HRFIGSLRTMGTKVGDYY-------LASTGLTETEGLFFPQTLASIIVRQPAPPLQHGTEILGKLIYD  376 (452)
T ss_dssp             HHHTTSSSSCC-CCCCCCCCCEEEEETTEE-------EEEEECCSGGGGGSSSCEEEEEEEEECTTTTCSCEEEEEEEEE
T ss_pred             HHHHHHhcCCC-ccCCCccccEEEEEcCee-------EEEecCCHHHHHHCCCceEEEEEecCCccCCCCCeEEEEEEEE
Confidence            99999998753 3343 3445667777643       6667765421       11  110       011247788776


Q ss_pred             C--CEEEEEEeecC-ChHH-hHHHHHHHhCCCCCCh-hh--hcCCCcHHH
Q 012165          412 S--GKLKGVLVESG-SPEE-FQLLPTLARSQPFVDK-AK--LQQASSVEE  454 (469)
Q Consensus       412 ~--~~l~g~~~~~~-~~~~-~~~~~~~~~~~~~~~~-~~--~~~~~~~~~  454 (469)
                      .  ++|+|++++++ ++.+ +..+..+|+.+.+++. ..  +..+|++.|
T Consensus       377 ~~~~~ilG~~~~g~~~a~e~i~~~~~ai~~~~t~~~l~~~~~~~~P~~~~  426 (452)
T 3oc4_A          377 KVTQRVLGAQLCSKNNCLEKINTLALSIQTGQTLTDLLQKDYFYQPSLTN  426 (452)
T ss_dssp             TTTCBEEEEEEEESSCCTHHHHHHHHHHHTTCBHHHHHTCCCCCCTTTSC
T ss_pred             CCCCEEEEEEEEeCCCHHHHHHHHHHHHHcCCCHHHHHhhHhccCCCCCC
Confidence            4  99999998776 5654 5556667888887763 22  356777776

>3iwa_A FAD-dependent pyridine nucleotide-disulphide oxidoreductase; structural genomics, PSI-2, protein structur initiative; 2.30A {Desulfovibrio vulgaris}

Probab=100.00  E-value=8.2e-46  Score=378.44  Aligned_cols=390  Identities=22%  Similarity=0.325  Sum_probs=267.4

Q ss_pred             CCcEEEEcCcHHHHHHHHHHHHcCCCCCcEEEEcCCCCCCCCCCCCcccccCCCCCCCCCCCCCccccCCCCCCCCHhHH
Q 012165           51 NREFVIVGGGNAAGYAARTFVEHGMADGRLCIVSKEAYAPYERPALTKGYLFPLDKKPARLPGFHTCVGSGGERQTPEWY  130 (469)
Q Consensus        51 ~~~vvIIGgG~AGl~aA~~L~~~g~~~~~V~vie~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  130 (469)
                      ++||+|||||+||++||.+|++.+. ..+|+|||+++.++|.++.++. ++.........+....    .. .....+++
T Consensus         3 ~~~VvIIGaG~aGl~aA~~L~~~~~-g~~Vtvie~~~~~~~~~~gl~~-~~~g~~~~~~~~~~~~----~~-~~~~~~~~   75 (472)
T 3iwa_A            3 LKHVVVIGAVALGPKAACRFKRLDP-EAHVTMIDQASRISYGGCGIPY-YVSGEVSNIESLQATP----YN-VVRDPEFF   75 (472)
T ss_dssp             -CEEEEECCSSHHHHHHHHHHHHCT-TSEEEEECCC--------------------------------------------
T ss_pred             CCcEEEECCCHHHHHHHHHHHhhCc-CCCEEEEECCCcccccccccch-hhcCCCCchHHhcccc----ch-hccCHHHH
Confidence            5799999999999999999999943 4589999999999888766654 2211111111110000    00 11233344


Q ss_pred             H-HCCcEEEeCCcEEEEeCCCcEEEeCC---Ce--EEEeccEEeccCCCCCcCCCCCCCCcCcEEEecCHHHHHHHHHhh
Q 012165          131 K-EKGIEMIYQDPVTSIDIEKQTLITNS---GK--LLKYGSLIVATGCTASRFPEKIGGYLPGVHYIRDVADADALISSL  204 (469)
Q Consensus       131 ~-~~~i~~~~~~~v~~id~~~~~v~~~~---g~--~~~yd~lVlAtG~~~~~~~~~~g~~~~~v~~~~~~~~~~~~~~~~  204 (469)
                      . +.+++++.+++|+.++++.+.+.+.+   |.  .+.||+||+|||++|. .|.++|.+.++++++++..+...+.+.+
T Consensus        76 ~~~~gi~~~~~~~V~~id~~~~~v~~~~~~~g~~~~~~~d~lviAtG~~p~-~p~i~G~~~~~v~~~~~~~~~~~l~~~l  154 (472)
T 3iwa_A           76 RINKDVEALVETRAHAIDRAAHTVEIENLRTGERRTLKYDKLVLALGSKAN-RPPVEGMDLAGVTPVTNLDEAEFVQHAI  154 (472)
T ss_dssp             -----CEEECSEEEEEEETTTTEEEEEETTTCCEEEEECSEEEECCCEEEC-CCSCTTTTSBTEEECCSHHHHHHHHHHC
T ss_pred             hhhcCcEEEECCEEEEEECCCCEEEEeecCCCCEEEEECCEEEEeCCCCcC-CCCCCCCCCCCEEEeCCHHHHHHHHHHh
Confidence            4 58999999999999999999888764   55  7999999999999987 5667887778899998888888776655


Q ss_pred             h--cCCeEEEEcCChHHHHHHHHHHhC-CCeEe-------------------eeHHHHHHcCcEEEcCCeEEEEEeCCCC
Q 012165          205 E--KAKKVVVVGGGYIGMEVAAAAVGW-KLDTT-------------------RYEQLYQQNGVKFVKGASIKNLEAGSDG  262 (469)
Q Consensus       205 ~--~~~~vvVvG~G~~g~e~A~~l~~~-g~~v~-------------------~~~~~l~~~gV~~~~~~~v~~i~~~~~~  262 (469)
                      .  .+++++|||+|.+|+|+|..+.++ |.+++                   .+.+.+++.||++++++.|++++.. ++
T Consensus       155 ~~~~~~~vvViGgG~~g~e~A~~l~~~~g~~Vtlv~~~~~~l~~~~~~~~~~~l~~~l~~~GV~i~~~~~v~~i~~~-~~  233 (472)
T 3iwa_A          155 SAGEVSKAVIVGGGFIGLEMAVSLADMWGIDTTVVELADQIMPGFTSKSLSQMLRHDLEKNDVVVHTGEKVVRLEGE-NG  233 (472)
T ss_dssp             CTTSCSEEEEECCSHHHHHHHHHHHHHHCCEEEEECSSSSSSTTTSCHHHHHHHHHHHHHTTCEEECSCCEEEEEES-SS
T ss_pred             hcCCCCEEEEECCCHHHHHHHHHHHHhcCCcEEEEEccCcccccccCHHHHHHHHHHHHhcCCEEEeCCEEEEEEcc-CC
Confidence            3  479999999999999999999999 99887                   3456788999999999999999863 45


Q ss_pred             cEEEEEcCCCCEEeCCEEEEccCCccCCchhhhcCCccc-CCCEEeCCCCCCCCCceEEeccccccCCccCCcccccchH
Q 012165          263 RVAAVKLEDGSTIDADTIVIGIGAKPTVSPFERVGLNSS-VGGIQVDGQFRTRMPGIFAIGDVAAFPLKMYDRTARVEHV  341 (469)
Q Consensus       263 ~v~~v~~~~g~~i~~D~vi~a~G~~p~~~~~~~~gl~~~-~g~i~Vd~~~~t~~~~Vfa~GD~a~~~~~~~~~~~~~~~~  341 (469)
                      .+. +.+++|+++++|.||+|+|++|++++++++|++.+ +|+|.||+++||+.|+|||+|||+..+....|.......+
T Consensus       234 ~v~-v~~~~g~~i~aD~Vv~a~G~~p~~~l~~~~gl~~~~~g~i~vd~~~~t~~~~Iya~GD~~~~~~~~~g~~~~~~~~  312 (472)
T 3iwa_A          234 KVA-RVITDKRTLDADLVILAAGVSPNTQLARDAGLELDPRGAIIVDTRMRTSDPDIFAGGDCVTIPNLVTGKPGFFPLG  312 (472)
T ss_dssp             BEE-EEEESSCEEECSEEEECSCEEECCHHHHHHTCCBCTTCCEECCTTCBCSSTTEEECGGGEEEEBTTTSSEECCCCT
T ss_pred             eEE-EEEeCCCEEEcCEEEECCCCCcCHHHHHhCCccCCCCCCEEECCCcccCCCCEEEeccceecccccCCceeecchH
Confidence            553 77889999999999999999999999888899875 6889999999999999999999998766555554445566


Q ss_pred             HHHHHHHHHHHHHHhcCCCCCCCCCCceeeecccccCCCcceeeEEeecCCCc-------EE--EEc---------cCCC
Q 012165          342 DHARQSAQHCIKALLSAQTHTYDYLPYFYSRVFEYEGSPRKVWWQFFGDNVGE-------TI--EIG---------NFDP  403 (469)
Q Consensus       342 ~~A~~~a~~~a~~i~~~~~~~~~~~p~~~~~~~~~~g~~~~~~~~~~G~~~~~-------~~--~~~---------~~~~  403 (469)
                      ..|..||+.+|+||++........+|++|+.+|+.+       +..+|.+..+       ..  ...         +...
T Consensus       313 ~~A~~~g~~aa~~i~g~~~~~~~~~~~~~~~~~~~~-------~a~vG~~e~~a~~~g~~~~~~~~~~~~~~~~~~~~~~  385 (472)
T 3iwa_A          313 SMANRQGRVIGTNLADGDATFPGAVGSWAVKLFEGS-------ASGAGLTVEGALREGYDAVNVHVEQFDRAHFYPEKTI  385 (472)
T ss_dssp             THHHHHHHHHHHHHTTCCCCCCCBCCCEEEECSSCE-------EEEEECCHHHHHHTTCCEEEEEEEC-----------C
T ss_pred             HHHHHHHHHHHHHhcCCCccCCCCCcceEEEECCce-------eEEEECCHHHHHHcCCceEEEEEecCCccCccCCCce
Confidence            779999999999999754433345677887777643       6667765321       11  110         0112


Q ss_pred             cEEEEEEe--CCEEEEEEeecC---Ch-HHhHHHHHHHhCCCCCCh-hhh-cC-CCcHHHHHH
Q 012165          404 KIATFWID--SGKLKGVLVESG---SP-EEFQLLPTLARSQPFVDK-AKL-QQ-ASSVEEALE  457 (469)
Q Consensus       404 ~~~~~~~~--~~~l~g~~~~~~---~~-~~~~~~~~~~~~~~~~~~-~~~-~~-~~~~~~~~~  457 (469)
                      .|.|+.++  +++|+|+++++.   .+ +.+..+..+|+.+.+++. ..+ .. +|++.|++.
T Consensus       386 ~~~kli~~~~~~~ilG~~~~g~~~~~~~~~i~~~~~ai~~~~t~~~l~~~~~~~~P~~~~~~~  448 (472)
T 3iwa_A          386 MTLQLVVDRPTRRVLGIQGFSTLGDALTARINAVATMLASKPTVEDISNAEVVYSPPFASAMD  448 (472)
T ss_dssp             EEEEEEEETTTCBEEEEEEEESCHHHHHHHHHHHHHHHTTCCBHHHHHTCCCC--------CC
T ss_pred             EEEEEEEECCCCEEEEEEEECCCcccHHHHHHHHHHHHHcCCCHHHHhcccccCCCCCCCccc
Confidence            36777774  699999998666   22 335555666788877663 222 33 388888543

>3cgb_A Pyridine nucleotide-disulfide oxidoreductase, CLA; coenzyme A, flavin adenine dinucleotide, selenomethionine, F flavoprotein; HET: COA FAD; 1.90A {Bacillus anthracis str} PDB: 3cgc_A* 3cgd_A* 3cge_A*

Probab=100.00  E-value=4.9e-45  Score=373.09  Aligned_cols=405  Identities=19%  Similarity=0.274  Sum_probs=288.1

Q ss_pred             cCCcccccccccccccccCCCCCCcEEEEcCcHHHHHHHHHHHHcCCCCCcEEEEcCCCCCCCCCCCCcccccCCCCCCC
Q 012165           29 HSSAKNFQRRGFVVAYSSFANENREFVIVGGGNAAGYAARTFVEHGMADGRLCIVSKEAYAPYERPALTKGYLFPLDKKP  108 (469)
Q Consensus        29 ~~~~~~~~~~~~~~~~~~~~~~~~~vvIIGgG~AGl~aA~~L~~~g~~~~~V~vie~~~~~~~~~~~l~~~~~~~~~~~~  108 (469)
                      ..+||...++. .....+....++||+|||||+||+++|..|++.+. ..+|+|||+++..+|.++.++. ++.......
T Consensus        15 ~~~np~~g~~~-~~~~~~~~~~~~dvvIIG~G~aGl~aA~~l~~~~~-g~~V~lie~~~~~~~~~~~~~~-~~~~~~~~~   91 (480)
T 3cgb_A           15 MTGGQQMGRTL-YDDDDKDRWGSMNYVIIGGDAAGMSAAMQIVRNDE-NANVVTLEKGEIYSYAQCGLPY-VISGAIAST   91 (480)
T ss_dssp             -----------------------CEEEEECCSHHHHHHHHHHHHHCT-TCEEEEECSSSCCSBCGGGHHH-HHTTSSSCG
T ss_pred             ccchhhhcccc-cCCCCcCccccceEEEECCCHHHHHHHHHHHhhCc-CCcEEEEECCCCCCCCCCCcch-hhcCCcCCH
Confidence            45666544432 21112222235799999999999999999999743 4489999999887776554432 221111111


Q ss_pred             CCCCCCccccCCCCCCCCHhHH-HHCCcEEEeCCcEEEEeCCCcEEEeCC---Ce--EEEeccEEeccCCCCCcCCCCCC
Q 012165          109 ARLPGFHTCVGSGGERQTPEWY-KEKGIEMIYQDPVTSIDIEKQTLITNS---GK--LLKYGSLIVATGCTASRFPEKIG  182 (469)
Q Consensus       109 ~~~~~~~~~~~~~~~~~~~~~~-~~~~i~~~~~~~v~~id~~~~~v~~~~---g~--~~~yd~lVlAtG~~~~~~~~~~g  182 (469)
                      ..+           .....+++ +..+++++.+++|+.++.+.++|.+.+   |+  ++.||+||+|||++|+ .|.++|
T Consensus        92 ~~l-----------~~~~~~~~~~~~gv~~~~~~~v~~i~~~~~~v~v~~~~~g~~~~~~~d~lviAtG~~p~-~p~i~G  159 (480)
T 3cgb_A           92 EKL-----------IARNVKTFRDKYGIDAKVRHEVTKVDTEKKIVYAEHTKTKDVFEFSYDRLLIATGVRPV-MPEWEG  159 (480)
T ss_dssp             GGG-----------BSSCHHHHHHTTCCEEESSEEEEEEETTTTEEEEEETTTCCEEEEECSEEEECCCEEEC-CCCCBT
T ss_pred             HHh-----------hhcCHHHHHhhcCCEEEeCCEEEEEECCCCEEEEEEcCCCceEEEEcCEEEECCCCccc-CCCCCC
Confidence            111           12345666 445999999889999999888887753   65  7999999999999987 566778


Q ss_pred             CCcCcEEEecCHHHHHHHHHhhh--cCCeEEEEcCChHHHHHHHHHHhCCCeEe------------------eeHHHHHH
Q 012165          183 GYLPGVHYIRDVADADALISSLE--KAKKVVVVGGGYIGMEVAAAAVGWKLDTT------------------RYEQLYQQ  242 (469)
Q Consensus       183 ~~~~~v~~~~~~~~~~~~~~~~~--~~~~vvVvG~G~~g~e~A~~l~~~g~~v~------------------~~~~~l~~  242 (469)
                      .+.++++++++..+...+.+.+.  .+++++|||+|++|+|+|..|.++|.+|+                  .+.+.+++
T Consensus       160 ~~~~~v~~~~~~~~~~~l~~~~~~~~~~~vvViGgG~~g~e~A~~l~~~g~~Vtlv~~~~~~l~~~~~~~~~~l~~~l~~  239 (480)
T 3cgb_A          160 RDLQGVHLLKTIPDAERILKTLETNKVEDVTIIGGGAIGLEMAETFVELGKKVRMIERNDHIGTIYDGDMAEYIYKEADK  239 (480)
T ss_dssp             TTSBTEECCSSHHHHHHHHHHHHSSCCCEEEEECCHHHHHHHHHHHHHTTCEEEEECCGGGTTSSSCHHHHHHHHHHHHH
T ss_pred             ccCCCEEEeCCHHHHHHHHHHhhhcCCCeEEEECCCHHHHHHHHHHHhcCCeEEEEEeCCchhhcCCHHHHHHHHHHHHH
Confidence            76678888888888877776665  78999999999999999999999999987                  34567888


Q ss_pred             cCcEEEcCCeEEEEEeCCCCcEEEEEcCCCCEEeCCEEEEccCCccCCchhhhcCCccc-CCCEEeCCCCCCCCCceEEe
Q 012165          243 NGVKFVKGASIKNLEAGSDGRVAAVKLEDGSTIDADTIVIGIGAKPTVSPFERVGLNSS-VGGIQVDGQFRTRMPGIFAI  321 (469)
Q Consensus       243 ~gV~~~~~~~v~~i~~~~~~~v~~v~~~~g~~i~~D~vi~a~G~~p~~~~~~~~gl~~~-~g~i~Vd~~~~t~~~~Vfa~  321 (469)
                      .||++++++.+++++.+  +.+..+.++ +.++++|.||+|+|++|++++++++|++.+ +|+|.||+++||++|+|||+
T Consensus       240 ~Gv~i~~~~~v~~i~~~--~~v~~v~~~-~~~i~~D~vi~a~G~~p~~~~l~~~g~~~~~~G~I~Vd~~~~ts~p~IyA~  316 (480)
T 3cgb_A          240 HHIEILTNENVKAFKGN--ERVEAVETD-KGTYKADLVLVSVGVKPNTDFLEGTNIRTNHKGAIEVNAYMQTNVQDVYAA  316 (480)
T ss_dssp             TTCEEECSCCEEEEEES--SBEEEEEET-TEEEECSEEEECSCEEESCGGGTTSCCCBCTTSCBCCCTTSBCSSTTEEEC
T ss_pred             cCcEEEcCCEEEEEEcC--CcEEEEEEC-CCEEEcCEEEECcCCCcChHHHHhCCcccCCCCCEEECCCccCCCCCEEEe
Confidence            99999999999999853  445456665 458999999999999999999999998875 57899999999999999999


Q ss_pred             ccccccCCccCCcccccchHHHHHHHHHHHHHHHhcCCCCCCC-CCCceeeecccccCCCcceeeEEeecCCC-------
Q 012165          322 GDVAAFPLKMYDRTARVEHVDHARQSAQHCIKALLSAQTHTYD-YLPYFYSRVFEYEGSPRKVWWQFFGDNVG-------  393 (469)
Q Consensus       322 GD~a~~~~~~~~~~~~~~~~~~A~~~a~~~a~~i~~~~~~~~~-~~p~~~~~~~~~~g~~~~~~~~~~G~~~~-------  393 (469)
                      |||+..+....|...+...+..|..||+.+|++|++. ..++. ..+++|+.+++..       +..+|....       
T Consensus       317 GD~~~~~~~~~g~~~~~~~~~~A~~qg~~aa~~i~g~-~~~~~~~~~~~~~~~~~~~-------~~~vG~~~~~a~~~g~  388 (480)
T 3cgb_A          317 GDCATHYHVIKEIHDHIPIGTTANKQGRLAGLNMLDK-RRAFKGTLGTGIIKFMNLT-------LARTGLNEKEAKGLHI  388 (480)
T ss_dssp             GGGBCEEBTTTCSEECCCCHHHHHHHHHHHHHHHTTC-CCCCCCBCCCEEEEETTEE-------EEEEECCHHHHHHTTC
T ss_pred             eeEEEecCCCCCcceecchHHHHHHHHHHHHHHhcCC-CccCCCccceeEEEECCcE-------EEEeCCCHHHHHHcCC
Confidence            9999876544444434457888999999999999964 34443 3456677777643       666775432       


Q ss_pred             cE---EEEcc--C----C--CcEEEEEEe--CCEEEEEEeecCC-hH-HhHHHHHHHhCCCCCCh-hh--hcCCCcHHHH
Q 012165          394 ET---IEIGN--F----D--PKIATFWID--SGKLKGVLVESGS-PE-EFQLLPTLARSQPFVDK-AK--LQQASSVEEA  455 (469)
Q Consensus       394 ~~---~~~~~--~----~--~~~~~~~~~--~~~l~g~~~~~~~-~~-~~~~~~~~~~~~~~~~~-~~--~~~~~~~~~~  455 (469)
                      +.   .....  .    .  ..|.+++++  +++|+|+++++.. +. .+..+..+|+.+.+++. ..  +..+|++.|+
T Consensus       389 ~~~~~~~~~~~~~~~~~~~~~~~~kl~~~~~~~~ilG~~~vg~~~a~e~i~~~~~ai~~~~~~~~l~~~~~~~~Pt~~e~  468 (480)
T 3cgb_A          389 PYKTVKVDSTNMAGYYPNAKPLYLKLLYRSDTKQLLGGQVIGEEGVDKRIDVIAMALFNKMSIHDLEDVDLSYAPPYNSV  468 (480)
T ss_dssp             CEEEEEEEEESSCTTSTTCCEEEEEEEEETTTCBEEEEEEEESSSHHHHHHHHHHHHHTTCBGGGGGGCCCCCCTTTCCS
T ss_pred             ceEEEEEecCCcccccCCCceEEEEEEEECCCCEEEEEEEECCccHHHHHHHHHHHHHcCCCHHHHhhcccccCCCCCCc
Confidence            11   11111  0    1  126677774  6999999987776 54 45566778898888773 33  2467998886


Q ss_pred             HHHH
Q 012165          456 LEIA  459 (469)
Q Consensus       456 ~~~~  459 (469)
                      +..+
T Consensus       469 ~~~~  472 (480)
T 3cgb_A          469 WDPI  472 (480)
T ss_dssp             SCHH
T ss_pred             hhHH
Confidence            5444

>2v3a_A Rubredoxin reductase; alkane degradation, NADH oxidoreductase, rubredoxin reductas NAD, flavoprotein, oxidoreductase; HET: FAD; 2.4A {Pseudomonas aeruginosa} PDB: 2v3b_A*

Probab=100.00  E-value=2.8e-44  Score=357.46  Aligned_cols=349  Identities=21%  Similarity=0.259  Sum_probs=270.1

Q ss_pred             CCCcEEEEcCcHHHHHHHHHHHHcCCCCCcEEEEcCCCCCCCCCCCCcccccCCCCCCCCCCCCCccccCCCCCC-CCHh
Q 012165           50 ENREFVIVGGGNAAGYAARTFVEHGMADGRLCIVSKEAYAPYERPALTKGYLFPLDKKPARLPGFHTCVGSGGER-QTPE  128 (469)
Q Consensus        50 ~~~~vvIIGgG~AGl~aA~~L~~~g~~~~~V~vie~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~  128 (469)
                      .++||+|||||+||++||..|++.|+ +.+|+++|+++...|.++.+++.+..  ......+           .. ....
T Consensus         3 ~~~dvvIIG~G~aGl~aA~~l~~~g~-~~~V~lie~~~g~~~~~~~l~~~~~~--~~~~~~~-----------~~~~~~~   68 (384)
T 2v3a_A            3 ERAPLVIIGTGLAGYNLAREWRKLDG-ETPLLMITADDGRSYSKPMLSTGFSK--NKDADGL-----------AMAEPGA   68 (384)
T ss_dssp             -CCCEEEECCSHHHHHHHHHHHTTCS-SSCEEEECSSCCCEECGGGGGGTTTT--TCCHHHH-----------EEECHHH
T ss_pred             CCCcEEEECChHHHHHHHHHHHhhCC-CCCEEEEECCCCCccCcccccHHHhC--CCCHHHh-----------hccCHHH
Confidence            35899999999999999999999986 66899999998777777766653221  1111111           11 2345


Q ss_pred             HHHHCCcEEEeCCcEEEEeCCCcEEEeCCCeEEEeccEEeccCCCCCcCCCCCCCCcCcEEEecCHHHHHHHHHhhhcCC
Q 012165          129 WYKEKGIEMIYQDPVTSIDIEKQTLITNSGKLLKYGSLIVATGCTASRFPEKIGGYLPGVHYIRDVADADALISSLEKAK  208 (469)
Q Consensus       129 ~~~~~~i~~~~~~~v~~id~~~~~v~~~~g~~~~yd~lVlAtG~~~~~~~~~~g~~~~~v~~~~~~~~~~~~~~~~~~~~  208 (469)
                      ++++.+++++.+++|..++.+.++|.+.++ ++.||+||+|||++|. .|+++|.+.+++++.+++.+...+...+..++
T Consensus        69 ~~~~~~v~~~~~~~v~~i~~~~~~v~~~~~-~~~~d~lviAtG~~p~-~p~i~g~~~~~v~~~~~~~~~~~~~~~~~~~~  146 (384)
T 2v3a_A           69 MAEQLNARILTHTRVTGIDPGHQRIWIGEE-EVRYRDLVLAWGAEPI-RVPVEGDAQDALYPINDLEDYARFRQAAAGKR  146 (384)
T ss_dssp             HHHHTTCEEECSCCCCEEEGGGTEEEETTE-EEECSEEEECCCEEEC-CCCCBSTTTTCEEECSSHHHHHHHHHHHTTCC
T ss_pred             HHHhCCcEEEeCCEEEEEECCCCEEEECCc-EEECCEEEEeCCCCcC-CCCCCCcCcCCEEEECCHHHHHHHHHhhccCC
Confidence            668899999988899999998889988654 6999999999999987 56677766678899999998888877777899


Q ss_pred             eEEEEcCChHHHHHHHHHHhCCCeEe-------------------eeHHHHHHcCcEEEcCCeEEEEEeCCCCcEEEEEc
Q 012165          209 KVVVVGGGYIGMEVAAAAVGWKLDTT-------------------RYEQLYQQNGVKFVKGASIKNLEAGSDGRVAAVKL  269 (469)
Q Consensus       209 ~vvVvG~G~~g~e~A~~l~~~g~~v~-------------------~~~~~l~~~gV~~~~~~~v~~i~~~~~~~v~~v~~  269 (469)
                      +++|||+|++|+|+|..|.++|.+++                   .+.+.+++.||++++++.+++++.++ +. ..+.+
T Consensus       147 ~v~ViGgG~~g~e~A~~l~~~g~~Vtlv~~~~~~~~~~~~~~~~~~l~~~l~~~gv~i~~~~~v~~i~~~~-~~-~~v~~  224 (384)
T 2v3a_A          147 RVLLLGAGLIGCEFANDLSSGGYQLDVVAPCEQVMPGLLHPAAAKAVQAGLEGLGVRFHLGPVLASLKKAG-EG-LEAHL  224 (384)
T ss_dssp             EEEEECCSHHHHHHHHHHHHTTCEEEEEESSSSSSTTTSCHHHHHHHHHHHHTTTCEEEESCCEEEEEEET-TE-EEEEE
T ss_pred             eEEEECCCHHHHHHHHHHHhCCCeEEEEecCcchhhcccCHHHHHHHHHHHHHcCCEEEeCCEEEEEEecC-CE-EEEEE
Confidence            99999999999999999999999987                   34567788999999999999998643 33 36788


Q ss_pred             CCCCEEeCCEEEEccCCccCCchhhhcCCcccCCCEEeCCCCCCCCCceEEeccccccCCccCCcccccchHHHHHHHHH
Q 012165          270 EDGSTIDADTIVIGIGAKPTVSPFERVGLNSSVGGIQVDGQFRTRMPGIFAIGDVAAFPLKMYDRTARVEHVDHARQSAQ  349 (469)
Q Consensus       270 ~~g~~i~~D~vi~a~G~~p~~~~~~~~gl~~~~g~i~Vd~~~~t~~~~Vfa~GD~a~~~~~~~~~~~~~~~~~~A~~~a~  349 (469)
                      ++|+++++|.||+|+|.+|++++++++|++.++| |.||+++||+.|+|||+|||+..+...      ..++..|..||+
T Consensus       225 ~~g~~i~~d~vv~a~G~~p~~~l~~~~g~~~~~g-i~vd~~~~t~~~~IyA~GD~~~~~~~~------~~~~~~a~~~g~  297 (384)
T 2v3a_A          225 SDGEVIPCDLVVSAVGLRPRTELAFAAGLAVNRG-IVVDRSLRTSHANIYALGDCAEVDGLN------LLYVMPLMACAR  297 (384)
T ss_dssp             TTSCEEEESEEEECSCEEECCHHHHHTTCCBSSS-EEECTTCBCSSTTEEECGGGEEETTBC------CCSHHHHHHHHH
T ss_pred             CCCCEEECCEEEECcCCCcCHHHHHHCCCCCCCC-EEECCCCCCCCCCEEEeeeeeeECCCC------cchHHHHHHHHH
Confidence            8999999999999999999998999999988765 999999999999999999999754321      236777999999


Q ss_pred             HHHHHHhcCCCCCC--CCCCceeeecccccCCCcceeeEEeecCCC---cEEEEccCCCcEEEEEEe-CCEEEEEEeecC
Q 012165          350 HCIKALLSAQTHTY--DYLPYFYSRVFEYEGSPRKVWWQFFGDNVG---ETIEIGNFDPKIATFWID-SGKLKGVLVESG  423 (469)
Q Consensus       350 ~~a~~i~~~~~~~~--~~~p~~~~~~~~~~g~~~~~~~~~~G~~~~---~~~~~~~~~~~~~~~~~~-~~~l~g~~~~~~  423 (469)
                      .+|+||++.. .++  ..+|+.+   |.. +    ..++..|....   .....++ ...|.+++++ +|+|+|+++++.
T Consensus       298 ~~a~~i~g~~-~~~~~~~~p~~~---~~~-~----~~~~~~g~~~~~~~~~~~~~~-~~g~~~~~~~~~~~i~G~~~~g~  367 (384)
T 2v3a_A          298 ALAQTLAGNP-SQVAYGPMPVTV---KTP-A----CPLVVSPPPRGMDGQWLVEGS-GTDLKVLCRDTAGRVIGYALTGA  367 (384)
T ss_dssp             HHHHHHTTCC-CCCCCCCCCEEE---CCT-T----SCEEEECCCTTCCCEEEEEEE-TTEEEEEEECTTSCEEEEEEEGG
T ss_pred             HHHHHhcCCC-ccCCCCCcceEE---EEC-C----eeEEEecCCCCCCceEEEEec-CCcEEEEEEccCCEEEEEEEECc
Confidence            9999999743 444  4566532   211 1    12666775432   2233333 2347788775 799999998777


Q ss_pred             ChHHhHHHHH
Q 012165          424 SPEEFQLLPT  433 (469)
Q Consensus       424 ~~~~~~~~~~  433 (469)
                      .+.++..+.+
T Consensus       368 ~a~e~~~~~~  377 (384)
T 2v3a_A          368 AVNEKLALNK  377 (384)
T ss_dssp             GGGGHHHHHT
T ss_pred             chHHHHHHHH
Confidence            7766555443

>3kd9_A Coenzyme A disulfide reductase; PSI-II, NYSGXRC, oxidoreductase, structural genomics structure initiative; 2.75A {Pyrococcus horikoshii}

Probab=100.00  E-value=1e-44  Score=368.06  Aligned_cols=378  Identities=21%  Similarity=0.260  Sum_probs=278.7

Q ss_pred             CCCcEEEEcCcHHHHHHHHHHHHcCCCCCcEEEEcCCCCCCCCCCCCcccccCCCCCCCCCCCCCccccCCCCCCCCHhH
Q 012165           50 ENREFVIVGGGNAAGYAARTFVEHGMADGRLCIVSKEAYAPYERPALTKGYLFPLDKKPARLPGFHTCVGSGGERQTPEW  129 (469)
Q Consensus        50 ~~~~vvIIGgG~AGl~aA~~L~~~g~~~~~V~vie~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  129 (469)
                      +++||+|||||+||+++|..|++.+. ..+|+|||+++..+|....++. ++... .....+           .....++
T Consensus         2 ~~~~VvIIGgG~aGl~aA~~L~~~~~-~~~V~vie~~~~~~~~~~~~p~-~~~~~-~~~~~~-----------~~~~~~~   67 (449)
T 3kd9_A            2 SLKKVVIIGGGAAGMSAASRVKRLKP-EWDVKVFEATEWVSHAPCGIPY-VVEGL-STPDKL-----------MYYPPEV   67 (449)
T ss_dssp             CCCEEEEECCSHHHHHHHHHHHHHCT-TSEEEEECSSSCCC-------------------------------------CT
T ss_pred             CcCcEEEECCcHHHHHHHHHHHHhCc-CCCEEEEECCCccccCCcCCcc-ccCCC-CCHHHh-----------hhcCHHH
Confidence            35799999999999999999999854 5589999999987665433332 11111 111111           1223344


Q ss_pred             H-HHCCcEEEeCCcEEEEeCCCcEEEeCCC-eEEEeccEEeccCCCCCcCCCCCCCCcCcEEEecCHHHHHHHHHhhh--
Q 012165          130 Y-KEKGIEMIYQDPVTSIDIEKQTLITNSG-KLLKYGSLIVATGCTASRFPEKIGGYLPGVHYIRDVADADALISSLE--  205 (469)
Q Consensus       130 ~-~~~~i~~~~~~~v~~id~~~~~v~~~~g-~~~~yd~lVlAtG~~~~~~~~~~g~~~~~v~~~~~~~~~~~~~~~~~--  205 (469)
                      + ++.+++++.+++|+.++.+.+.+.+.++ .++.||+||||||++|+ .|.++|.+.+++++.++..+...+.+...  
T Consensus        68 ~~~~~gi~v~~~~~v~~i~~~~~~v~~~~g~~~~~~d~lviAtG~~p~-~p~i~G~~~~~v~~~~~~~~~~~~~~~~~~~  146 (449)
T 3kd9_A           68 FIKKRGIDLHLNAEVIEVDTGYVRVRENGGEKSYEWDYLVFANGASPQ-VPAIEGVNLKGVFTADLPPDALAIREYMEKY  146 (449)
T ss_dssp             HHHHTTCEEETTCEEEEECSSEEEEECSSSEEEEECSEEEECCCEEEC-CCSCBTTTSTTEECSCSTHHHHHHHHHHSSS
T ss_pred             HHHhcCcEEEecCEEEEEecCCCEEEECCceEEEEcCEEEECCCCCCC-CCCCCCCCCCCEEEeCCHHHHHHHHHHHHhc
Confidence            4 6899999999999999998888988887 47999999999999986 56778877788888888888877777665  


Q ss_pred             cCCeEEEEcCChHHHHHHHHHHhCCCeEe-------------------eeHHHHHHcCcEEEcCCeEEEEEeCCCCcEEE
Q 012165          206 KAKKVVVVGGGYIGMEVAAAAVGWKLDTT-------------------RYEQLYQQNGVKFVKGASIKNLEAGSDGRVAA  266 (469)
Q Consensus       206 ~~~~vvVvG~G~~g~e~A~~l~~~g~~v~-------------------~~~~~l~~~gV~~~~~~~v~~i~~~~~~~v~~  266 (469)
                      .+++++|||+|++|+|+|..|.++|.+|+                   .+.+.+++. |++++++.+.+++.+  +.+..
T Consensus       147 ~~~~vvViGgG~~g~E~A~~l~~~g~~Vtlv~~~~~~l~~~~~~~~~~~l~~~l~~~-v~i~~~~~v~~i~~~--~~v~~  223 (449)
T 3kd9_A          147 KVENVVIIGGGYIGIEMAEAFAAQGKNVTMIVRGERVLRRSFDKEVTDILEEKLKKH-VNLRLQEITMKIEGE--ERVEK  223 (449)
T ss_dssp             CCCEEEEECCSHHHHHHHHHHHHTTCEEEEEESSSSTTTTTSCHHHHHHHHHHHTTT-SEEEESCCEEEEECS--SSCCE
T ss_pred             CCCeEEEECCCHHHHHHHHHHHhCCCeEEEEEcCCccchhhcCHHHHHHHHHHHHhC-cEEEeCCeEEEEecc--CcEEE
Confidence            78999999999999999999999999987                   345667778 999999999999853  23323


Q ss_pred             EEcCCCCEEeCCEEEEccCCccCCchhhhcCCccc-CCCEEeCCCCCCCCCceEEeccccccCCccCCcccccchHHHHH
Q 012165          267 VKLEDGSTIDADTIVIGIGAKPTVSPFERVGLNSS-VGGIQVDGQFRTRMPGIFAIGDVAAFPLKMYDRTARVEHVDHAR  345 (469)
Q Consensus       267 v~~~~g~~i~~D~vi~a~G~~p~~~~~~~~gl~~~-~g~i~Vd~~~~t~~~~Vfa~GD~a~~~~~~~~~~~~~~~~~~A~  345 (469)
                      + +.+++++++|.||+|+|++|++++++.+|++.+ +|+|.||+++||+.|+|||+|||+..+....|.......+..|.
T Consensus       224 v-~~~g~~i~~D~Vv~a~G~~p~~~l~~~~gl~~~~~G~i~vd~~~~t~~~~IyA~GD~~~~~~~~~g~~~~~~l~~~A~  302 (449)
T 3kd9_A          224 V-VTDAGEYKAELVILATGIKPNIELAKQLGVRIGETGAIWTNEKMQTSVENVYAAGDVAETRHVITGRRVWVPLAPAGN  302 (449)
T ss_dssp             E-EETTEEEECSEEEECSCEEECCHHHHHTTCCBCTTSSBCCCTTCBCSSTTEEECSTTBCEEBTTTCSEECCCCHHHHH
T ss_pred             E-EeCCCEEECCEEEEeeCCccCHHHHHhCCccCCCCCCEEECCCCccCCCCEEEeeeeeeeccccCCceEEeccHHHHH
Confidence            3 457788999999999999999999999999876 57799999999999999999999987655445444455778899


Q ss_pred             HHHHHHHHHHhcCCCCCC-CCCCceeeecccccCCCcceeeEEeecCCC-------cEEE-----Ecc--C----CCcEE
Q 012165          346 QSAQHCIKALLSAQTHTY-DYLPYFYSRVFEYEGSPRKVWWQFFGDNVG-------ETIE-----IGN--F----DPKIA  406 (469)
Q Consensus       346 ~~a~~~a~~i~~~~~~~~-~~~p~~~~~~~~~~g~~~~~~~~~~G~~~~-------~~~~-----~~~--~----~~~~~  406 (469)
                      .+|+.+|+||++... .+ ...|++|+.+++.+       +..+|.+..       +...     .+.  .    ...|.
T Consensus       303 ~~g~~aa~~i~g~~~-~~~~~~~~~~~~~~~~~-------~~~vG~~e~~a~~~g~~~~~~~~~~~~~~~~~~~~~~~~~  374 (449)
T 3kd9_A          303 KMGYVAGSNIAGKEL-HFPGVLGTAVTKFMDVE-------IGKTGLTEMEALKEGYDVRTAFIKASTRPHYYPGGREIWL  374 (449)
T ss_dssp             HHHHHHHHHHTTCCC-CCCCBCCCEEEEETTEE-------EEEEECCHHHHHHTTCCEEEEEEEEESSCTTSTTCCEEEE
T ss_pred             HHHHHHHHHhcCCCc-cCCCcccceEEEEcCcE-------EEEecCCHHHHHHCCCceEEEEEecCCccccCCCCceEEE
Confidence            999999999997543 44 34577788777654       667776532       1111     110  0    12377


Q ss_pred             EEEEeC--CEEEEEEeecCChHHhHH-HHHHHhCCCCCCh-hh--hcCCCcHHH
Q 012165          407 TFWIDS--GKLKGVLVESGSPEEFQL-LPTLARSQPFVDK-AK--LQQASSVEE  454 (469)
Q Consensus       407 ~~~~~~--~~l~g~~~~~~~~~~~~~-~~~~~~~~~~~~~-~~--~~~~~~~~~  454 (469)
                      |+.++.  ++|+|+++++.++.++.. +..+|+.+.+++. ..  +..+|++++
T Consensus       375 kli~~~~~~~ilG~~~~g~~a~e~i~~~~~ai~~~~t~~~l~~~~~~~~p~~~~  428 (449)
T 3kd9_A          375 KGVVDNETNRLLGVQVVGSDILPRIDTAAAMLMAGFTTKDAFFTDLAYAPPFAP  428 (449)
T ss_dssp             EEEEETTTCBEEEEEEEESSCHHHHHHHHHHHHTTCBHHHHHTCCCCCBTTTBC
T ss_pred             EEEEECCCCEEEEEEEEChHHHHHHHHHHHHHHcCCcHHHHhhcccccCCCCCC
Confidence            887764  999999998777765444 5556788877653 22  245666665

>3ntd_A FAD-dependent pyridine nucleotide-disulphide oxidoreductase; COA, persulfide reductase, rhodanese; HET: COA FAD; 1.99A {Shewanella loihica} PDB: 3nta_A* 3nt6_A*

Probab=100.00  E-value=2.6e-44  Score=375.82  Aligned_cols=369  Identities=20%  Similarity=0.347  Sum_probs=282.4

Q ss_pred             CCcEEEEcCcHHHHHHHHHHHHcCCCCCcEEEEcCCCCCCCCCCCCcccccCCCCCCCCCCCCCccccCCCCCCCCHhHH
Q 012165           51 NREFVIVGGGNAAGYAARTFVEHGMADGRLCIVSKEAYAPYERPALTKGYLFPLDKKPARLPGFHTCVGSGGERQTPEWY  130 (469)
Q Consensus        51 ~~~vvIIGgG~AGl~aA~~L~~~g~~~~~V~vie~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  130 (469)
                      |++|+|||||+||++||.+|++.+. ..+|+|||+++.++|.++.++. ++.........+           .....+++
T Consensus         1 M~~VvIIGgG~AGl~aA~~L~~~~~-~~~V~lie~~~~~~~~~~~l~~-~~~~~~~~~~~~-----------~~~~~~~~   67 (565)
T 3ntd_A            1 MKKILIIGGVAGGASAAARARRLSE-TAEIIMFERGEYVSFANCGLPY-HISGEIAQRSAL-----------VLQTPESF   67 (565)
T ss_dssp             CCEEEEECSSHHHHHHHHHHHHHCS-SSEEEEECSSSCSSBCGGGHHH-HHTSSSCCGGGG-----------BCCCHHHH
T ss_pred             CCcEEEECCCHHHHHHHHHHHhhCc-CCCEEEEECCCCccccccCchH-HhcCCcCChHHh-----------hccCHHHH
Confidence            3689999999999999999999964 5699999999998887666553 222111111110           12344555


Q ss_pred             H-HCCcEEEeCCcEEEEeCCCcEEEeCC---Ce--EEEeccEEeccCCCCCcCCCCCCCCcCcEEEecCHHHHHHHHHhh
Q 012165          131 K-EKGIEMIYQDPVTSIDIEKQTLITNS---GK--LLKYGSLIVATGCTASRFPEKIGGYLPGVHYIRDVADADALISSL  204 (469)
Q Consensus       131 ~-~~~i~~~~~~~v~~id~~~~~v~~~~---g~--~~~yd~lVlAtG~~~~~~~~~~g~~~~~v~~~~~~~~~~~~~~~~  204 (469)
                      . +.+++++.+++|+.++++.+.+++.+   |.  ++.||+||||||++|+ .|.++|.+.+++++.++..+.+.+.+.+
T Consensus        68 ~~~~~i~~~~~~~V~~id~~~~~v~~~~~~~g~~~~~~~d~lviAtG~~p~-~p~ipG~~~~~v~~~~~~~~~~~l~~~~  146 (565)
T 3ntd_A           68 KARFNVEVRVKHEVVAIDRAAKLVTVRRLLDGSEYQESYDTLLLSPGAAPI-VPPIPGVDNPLTHSLRNIPDMDRILQTI  146 (565)
T ss_dssp             HHHHCCEEETTEEEEEEETTTTEEEEEETTTCCEEEEECSEEEECCCEEEC-CCCCTTCCSTTEECCSSHHHHHHHHHHH
T ss_pred             HHhcCcEEEECCEEEEEECCCCEEEEEecCCCCeEEEECCEEEECCCCCCC-CCCCCCCCCCCEEEeCCHHHHHHHHHHH
Confidence            4 58999999999999999999887753   43  7899999999999987 5667887778888888888887776543


Q ss_pred             --hcCCeEEEEcCChHHHHHHHHHHhCCCeEe------------------eeHHHHHHcCcEEEcCCeEEEEEeC-----
Q 012165          205 --EKAKKVVVVGGGYIGMEVAAAAVGWKLDTT------------------RYEQLYQQNGVKFVKGASIKNLEAG-----  259 (469)
Q Consensus       205 --~~~~~vvVvG~G~~g~e~A~~l~~~g~~v~------------------~~~~~l~~~gV~~~~~~~v~~i~~~-----  259 (469)
                        ..+++++|||+|++|+|+|..|.++|.+|+                  .+.+.+++.||++++++.+++++.+     
T Consensus       147 ~~~~~~~vvViGgG~~g~e~A~~l~~~g~~Vtlv~~~~~~l~~~~~~~~~~l~~~l~~~GV~i~~~~~v~~i~~~~~~~~  226 (565)
T 3ntd_A          147 QMNNVEHATVVGGGFIGLEMMESLHHLGIKTTLLELADQVMTPVDREMAGFAHQAIRDQGVDLRLGTALSEVSYQVQTHV  226 (565)
T ss_dssp             HHTTCSEEEEECCSHHHHHHHHHHHHTTCEEEEEESSSSSCTTSCHHHHHHHHHHHHHTTCEEEETCCEEEEEEECCCCC
T ss_pred             hhCCCCEEEEECCCHHHHHHHHHHHhcCCcEEEEEcCCccchhcCHHHHHHHHHHHHHCCCEEEeCCeEEEEeccccccc
Confidence              357899999999999999999999999987                  3456788999999999999999862     


Q ss_pred             -------------CCCcEEEEEcCCCCEEeCCEEEEccCCccCCchhhhcCCccc-CCCEEeCCCCCCCCCceEEecccc
Q 012165          260 -------------SDGRVAAVKLEDGSTIDADTIVIGIGAKPTVSPFERVGLNSS-VGGIQVDGQFRTRMPGIFAIGDVA  325 (469)
Q Consensus       260 -------------~~~~v~~v~~~~g~~i~~D~vi~a~G~~p~~~~~~~~gl~~~-~g~i~Vd~~~~t~~~~Vfa~GD~a  325 (469)
                                   +++.+ .+.+.+|+++++|.||+|+|++|++++++.+|++.+ +|+|.||+++||+.|+|||+|||+
T Consensus       227 ~~~~~~~~~~~~~~~~~~-~v~~~~g~~i~~D~vi~a~G~~p~~~l~~~~g~~~~~~g~i~vd~~~~t~~~~IyA~GD~~  305 (565)
T 3ntd_A          227 ASDAAGEDTAHQHIKGHL-SLTLSNGELLETDLLIMAIGVRPETQLARDAGLAIGELGGIKVNAMMQTSDPAIYAVGDAV  305 (565)
T ss_dssp             CCGGGTCCCTTCCTTCEE-EEEETTSCEEEESEEEECSCEEECCHHHHHHTCCBCTTSSBCCCTTCBCSSTTEEECGGGB
T ss_pred             cccccccccccccCCCcE-EEEEcCCCEEEcCEEEECcCCccchHHHHhCCcccCCCCCEEECCCcccCCCCEEEeeeeE
Confidence                         24444 467789999999999999999999999988898876 688999999999999999999999


Q ss_pred             ccCCccCCcccccchHHHHHHHHHHHHHHHhcCCCCCCCCC-CceeeecccccCCCcceeeEEeecCCCc---------E
Q 012165          326 AFPLKMYDRTARVEHVDHARQSAQHCIKALLSAQTHTYDYL-PYFYSRVFEYEGSPRKVWWQFFGDNVGE---------T  395 (469)
Q Consensus       326 ~~~~~~~~~~~~~~~~~~A~~~a~~~a~~i~~~~~~~~~~~-p~~~~~~~~~~g~~~~~~~~~~G~~~~~---------~  395 (469)
                      ..+....|......++..|..||+.+|+||++.. ..|... ++.|+.+|+.+       +..+|.+..+         .
T Consensus       306 ~~~~~~~g~~~~~~~~~~A~~~g~~aa~~i~g~~-~~~~~~~~~~~~~~~~~~-------~~~vG~~e~~a~~~g~~~~~  377 (565)
T 3ntd_A          306 EEQDFVTGQACLVPLAGPANRQGRMAADNMFGRE-ERYQGTQGTAICKVFDLA-------VGATGKNEKQLKQAGIAFEK  377 (565)
T ss_dssp             CEEBTTTCCEECCCCHHHHHHHHHHHHHHHTTCC-CCCCCBCCCEEEEETTEE-------EEEEECCHHHHHHTTCCCEE
T ss_pred             eeccccCCceeecccHHHHHHHHHHHHHHhcCCC-ccCCCcccceEEEEcCcE-------EEEecCCHHHHHHcCCCeEE
Confidence            8776555655455678889999999999999754 346544 45556677643       6667765321         1


Q ss_pred             EEE---cc--C--C--CcEEEEEEe--CCEEEEEEeecCCh-HH-hHHHHHHHhCCCCCC
Q 012165          396 IEI---GN--F--D--PKIATFWID--SGKLKGVLVESGSP-EE-FQLLPTLARSQPFVD  442 (469)
Q Consensus       396 ~~~---~~--~--~--~~~~~~~~~--~~~l~g~~~~~~~~-~~-~~~~~~~~~~~~~~~  442 (469)
                      ...   +.  .  .  ..|.|+.++  +++|+|+++++.++ .+ +..+..+|+.+.+++
T Consensus       378 ~~~~~~~~~~~~~~~~~~~~k~v~~~~~~~ilG~~~~g~~a~~e~i~~~~~ai~~~~~~~  437 (565)
T 3ntd_A          378 VYVHTASHASYYPGAEVVSFKLLFDPVKGTIFGAQAVGKDGIDKRIDVMAVAQRAGMTVE  437 (565)
T ss_dssp             EEEEEESSCTTSTTCCEEEEEEEECTTTCBEEEEEEEESSSHHHHHHHHHHHHHTTCBHH
T ss_pred             EEEecCcccCcCCCCceEEEEEEEECCCCEEEEEEEECCccHHHHHHHHHHHHHcCCCHH
Confidence            111   10  1  1  136788874  69999999988776 44 555555677777665

>1nhp_A NADH peroxidase; oxidoreductase (H2O2(A)); HET: FAD; 2.00A {Enterococcus faecalis} SCOP: c.3.1.5 c.3.1.5 d.87.1.1 PDB: 1npx_A* 1joa_A* 2npx_A* 1nhq_A* 1nhs_A* 1nhr_A* 1f8w_A*

Probab=100.00  E-value=6.5e-45  Score=369.22  Aligned_cols=383  Identities=20%  Similarity=0.285  Sum_probs=285.5

Q ss_pred             CcEEEEcCcHHHHHHHHHHHHcCCCCCcEEEEcCCCCCCCCCCCCcccccCCCCCCCCCCCCCccccCCCCCCCCHhHHH
Q 012165           52 REFVIVGGGNAAGYAARTFVEHGMADGRLCIVSKEAYAPYERPALTKGYLFPLDKKPARLPGFHTCVGSGGERQTPEWYK  131 (469)
Q Consensus        52 ~~vvIIGgG~AGl~aA~~L~~~g~~~~~V~vie~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  131 (469)
                      +||+|||||+||++||..|++.+. ..+|+|||+++..+|....+.. ++........++           .....++++
T Consensus         1 ~dvvIIG~G~aGl~aA~~l~~~~~-g~~V~lie~~~~~~~~~~~~~~-~~~~~~~~~~~~-----------~~~~~~~~~   67 (447)
T 1nhp_A            1 MKVIVLGSSHGGYEAVEELLNLHP-DAEIQWYEKGDFISFLSAGMQL-YLEGKVKDVNSV-----------RYMTGEKME   67 (447)
T ss_dssp             CEEEEECSSHHHHHHHHHHHHHCT-TSEEEEEESSSSSSBCGGGHHH-HHTTSSCCGGGS-----------BSCCHHHHH
T ss_pred             CeEEEECCCHHHHHHHHHHHHhCc-CCeEEEEECCCccCcccccchh-hhcCccCCHHHh-----------hcCCHHHHH
Confidence            389999999999999999999842 4489999999887665333221 111110111111           234567888


Q ss_pred             HCCcEEEeCCcEEEEeCCCcEEEeCC---Ce--EEEeccEEeccCCCCCcCCCCCCCCcCcEEEecCHHHHHHHHHhhh-
Q 012165          132 EKGIEMIYQDPVTSIDIEKQTLITNS---GK--LLKYGSLIVATGCTASRFPEKIGGYLPGVHYIRDVADADALISSLE-  205 (469)
Q Consensus       132 ~~~i~~~~~~~v~~id~~~~~v~~~~---g~--~~~yd~lVlAtG~~~~~~~~~~g~~~~~v~~~~~~~~~~~~~~~~~-  205 (469)
                      +.+++++.+++++.++.+.++|.+.+   |+  ++.||+||||||++|. .|.++|.+.++++++++..+...+.+.+. 
T Consensus        68 ~~gv~~~~~~~v~~i~~~~~~v~~~~~~~g~~~~~~~d~lviAtG~~p~-~p~i~G~~~~~v~~~~~~~~~~~l~~~~~~  146 (447)
T 1nhp_A           68 SRGVNVFSNTEITAIQPKEHQVTVKDLVSGEERVENYDKLIISPGAVPF-ELDIPGKDLDNIYLMRGRQWAIKLKQKTVD  146 (447)
T ss_dssp             HTTCEEEETEEEEEEETTTTEEEEEETTTCCEEEEECSEEEECCCEEEC-CCCSTTTTSBSEECCCHHHHHHHHHHHHTC
T ss_pred             HCCCEEEECCEEEEEeCCCCEEEEEecCCCceEEEeCCEEEEcCCCCcC-CCCCCCCCCCCeEEECCHHHHHHHHHHhhh
Confidence            89999989999999999888887753   54  4899999999999987 56678876778888888888877777666 


Q ss_pred             -cCCeEEEEcCChHHHHHHHHHHhCCCeEe-------------------eeHHHHHHcCcEEEcCCeEEEEEeCCCCcEE
Q 012165          206 -KAKKVVVVGGGYIGMEVAAAAVGWKLDTT-------------------RYEQLYQQNGVKFVKGASIKNLEAGSDGRVA  265 (469)
Q Consensus       206 -~~~~vvVvG~G~~g~e~A~~l~~~g~~v~-------------------~~~~~l~~~gV~~~~~~~v~~i~~~~~~~v~  265 (469)
                       .+++++|||+|++|+|+|..|+++|.+++                   .+.+.+++.||++++++.+++++.+  +.+.
T Consensus       147 ~~~~~vvIiG~G~~g~e~A~~l~~~g~~Vtlv~~~~~~l~~~~~~~~~~~l~~~l~~~gv~i~~~~~v~~i~~~--~~v~  224 (447)
T 1nhp_A          147 PEVNNVVVIGSGYIGIEAAEAFAKAGKKVTVIDILDRPLGVYLDKEFTDVLTEEMEANNITIATGETVERYEGD--GRVQ  224 (447)
T ss_dssp             TTCCEEEEECCSHHHHHHHHHHHHTTCEEEEEESSSSTTTTTCCHHHHHHHHHHHHTTTEEEEESCCEEEEECS--SBCC
T ss_pred             cCCCeEEEECCCHHHHHHHHHHHHCCCeEEEEecCcccccccCCHHHHHHHHHHHHhCCCEEEcCCEEEEEEcc--CcEE
Confidence             78999999999999999999999999987                   3456678899999999999999843  4443


Q ss_pred             EEEcCCCCEEeCCEEEEccCCccCCchhhhcCCccc-CCCEEeCCCCCCCCCceEEeccccccCCccCCcccccchHHHH
Q 012165          266 AVKLEDGSTIDADTIVIGIGAKPTVSPFERVGLNSS-VGGIQVDGQFRTRMPGIFAIGDVAAFPLKMYDRTARVEHVDHA  344 (469)
Q Consensus       266 ~v~~~~g~~i~~D~vi~a~G~~p~~~~~~~~gl~~~-~g~i~Vd~~~~t~~~~Vfa~GD~a~~~~~~~~~~~~~~~~~~A  344 (469)
                      .+.+ +++++++|.||+|+|.+|+++++++. ++.+ +|+|.||+++||+.|+|||+|||+..+....+...+..++..|
T Consensus       225 ~v~~-~~~~i~~d~vi~a~G~~p~~~~~~~~-~~~~~~G~i~Vd~~~~t~~~~Iya~GD~~~~~~~~~g~~~~~~~~~~A  302 (447)
T 1nhp_A          225 KVVT-DKNAYDADLVVVAVGVRPNTAWLKGT-LELHPNGLIKTDEYMRTSEPDVFAVGDATLIKYNPADTEVNIALATNA  302 (447)
T ss_dssp             EEEE-SSCEEECSEEEECSCEEESCGGGTTT-SCBCTTSCBCCCTTCBCSSTTEEECGGGSCEEEGGGTEEECCCCHHHH
T ss_pred             EEEE-CCCEEECCEEEECcCCCCChHHHHhh-hhhcCCCcEEECccccCCCCCEEEeeeEEEeeccCCCCceechhHHHH
Confidence            4555 56789999999999999999988877 7664 5779999999999999999999998655444443345578889


Q ss_pred             HHHHHHHHHHHhcCCCCCCC-CCCceeeecccccCCCcceeeEEeecCCC-------cEE---E--Ecc--C--C--CcE
Q 012165          345 RQSAQHCIKALLSAQTHTYD-YLPYFYSRVFEYEGSPRKVWWQFFGDNVG-------ETI---E--IGN--F--D--PKI  405 (469)
Q Consensus       345 ~~~a~~~a~~i~~~~~~~~~-~~p~~~~~~~~~~g~~~~~~~~~~G~~~~-------~~~---~--~~~--~--~--~~~  405 (469)
                      ..||+.+|+||++.. .++. ..+++|+..++..       +..+|....       +..   .  ...  .  .  ..|
T Consensus       303 ~~qg~~aa~~i~g~~-~~~~~~~~~~~~~~~~~~-------~~~vG~~~~~a~~~g~~~~~~~~~~~~~~~~~~~~~~~~  374 (447)
T 1nhp_A          303 RKQGRFAVKNLEEPV-KPFPGVQGSSGLAVFDYK-------FASTGINEVMAQKLGKETKAVTVVEDYLMDFNPDKQKAW  374 (447)
T ss_dssp             HHHHHHHHHTSSSCC-CCCCCBCCCEEEEETTEE-------EEEEECCHHHHHHHTCCCEEEEEEEESSCTTCTTCCEEE
T ss_pred             HHHHHHHHHhhcCCC-CCCCCccccEEEEECCee-------eEEecCCHHHHHHcCCceEEEEEEcCCccccCCCCceEE
Confidence            999999999999643 3443 4577888877653       566775432       111   1  110  0  1  136


Q ss_pred             EEEEEe--CCEEEEEEeecCC-hHH-hHHHHHHHhCCCCCChhh---hcCCCcHHHHHHHHH
Q 012165          406 ATFWID--SGKLKGVLVESGS-PEE-FQLLPTLARSQPFVDKAK---LQQASSVEEALEIAR  460 (469)
Q Consensus       406 ~~~~~~--~~~l~g~~~~~~~-~~~-~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~  460 (469)
                      .|++++  +++|+|+++++.. +.+ +..+..+|+.+.+++.-.   +..||+++|++..+.
T Consensus       375 ~k~~~~~~~~~ilG~~~~g~~~a~e~i~~~~~ai~~~~~~~~l~~~~~~~~Pt~~e~~~~~~  436 (447)
T 1nhp_A          375 FKLVYDPETTQILGAQLMSKADLTANINAISLAIQAKMTIEDLAYADFFFQPAFDKPWNIIN  436 (447)
T ss_dssp             EEEEECTTTCBEEEEEEEESSCCTTHHHHHHHHHHTTCBHHHHHTCCCCCCTTTCCSSCHHH
T ss_pred             EEEEEECCCCEEEEEEEEcCccHHHHHHHHHHHHHcCCCHHHHhhcceecCCCCCCcccHHH
Confidence            677775  5999999987776 544 555677888888877433   356888888654443

>3ics_A Coenzyme A-disulfide reductase; pyridine nucleotide-disulfide oxidoreductase class I, rhodan coenzyme A, flavin adenine dinucleotide; HET: FAD COA ADP; 1.94A {Bacillus anthracis} PDB: 3icr_A* 3ict_A*

Probab=100.00  E-value=2.3e-42  Score=362.37  Aligned_cols=389  Identities=20%  Similarity=0.302  Sum_probs=279.3

Q ss_pred             cCCcccccccccccccccCCCCCCcEEEEcCcHHHHHHHHHHHHcCCCCCcEEEEcCCCCCCCCCCCCcccccCCCCCCC
Q 012165           29 HSSAKNFQRRGFVVAYSSFANENREFVIVGGGNAAGYAARTFVEHGMADGRLCIVSKEAYAPYERPALTKGYLFPLDKKP  108 (469)
Q Consensus        29 ~~~~~~~~~~~~~~~~~~~~~~~~~vvIIGgG~AGl~aA~~L~~~g~~~~~V~vie~~~~~~~~~~~l~~~~~~~~~~~~  108 (469)
                      ..+||...++. .....+..+++++|+|||||+||++||.+|++.+. ..+|+|+|+++.++|..+.++. ++.......
T Consensus        15 ~~~np~~g~e~-~~~~~~~~~~~~~VvIIGgG~AGl~aA~~L~~~~~-g~~V~vie~~~~~~~~~~~lp~-~~~g~~~~~   91 (588)
T 3ics_A           15 MTGGQQMGRTL-YDDDDKDRWGSRKIVVVGGVAGGASVAARLRRLSE-EDEIIMVERGEYISFANCGLPY-YIGGVITER   91 (588)
T ss_dssp             --------------------CCCCEEEEECCSHHHHHHHHHHHHHCS-SSEEEEECSSSCSSBCGGGHHH-HHTTSSCCG
T ss_pred             cccchhcCccc-cCcccCCcccCCCEEEECCcHHHHHHHHHHHhhCc-CCCEEEEECCCCccccCCCCch-hhcCcCCCh
Confidence            34677644442 22222334567899999999999999999999953 4589999999998887665543 222111111


Q ss_pred             CCCCCCccccCCCCCCCCHhHHHHCCcEEEeCCcEEEEeCCCcEEEeC---CCe--EEEeccEEeccCCCCCcCCCCCCC
Q 012165          109 ARLPGFHTCVGSGGERQTPEWYKEKGIEMIYQDPVTSIDIEKQTLITN---SGK--LLKYGSLIVATGCTASRFPEKIGG  183 (469)
Q Consensus       109 ~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~v~~id~~~~~v~~~---~g~--~~~yd~lVlAtG~~~~~~~~~~g~  183 (469)
                      ..+          .......+.++.+++++++++|+.++.+.+.+.+.   +|.  ++.||+||||||++|. .|.++|.
T Consensus        92 ~~~----------~~~~~~~~~~~~gi~v~~~~~V~~id~~~~~v~v~~~~~g~~~~~~~d~lviAtG~~p~-~p~i~G~  160 (588)
T 3ics_A           92 QKL----------LVQTVERMSKRFNLDIRVLSEVVKINKEEKTITIKNVTTNETYNEAYDVLILSPGAKPI-VPSIPGI  160 (588)
T ss_dssp             GGG----------BSSCHHHHHHHTTCEEECSEEEEEEETTTTEEEEEETTTCCEEEEECSEEEECCCEEEC-CCCCTTT
T ss_pred             HHh----------hccCHHHHHHhcCcEEEECCEEEEEECCCCEEEEeecCCCCEEEEeCCEEEECCCCCCC-CCCCCCc
Confidence            110          01233445568899999999999999999888774   455  6899999999999987 5667786


Q ss_pred             -CcCcEEEecCHHHHHHHHHhh--hcCCeEEEEcCChHHHHHHHHHHhCCCeEe------------------eeHHHHHH
Q 012165          184 -YLPGVHYIRDVADADALISSL--EKAKKVVVVGGGYIGMEVAAAAVGWKLDTT------------------RYEQLYQQ  242 (469)
Q Consensus       184 -~~~~v~~~~~~~~~~~~~~~~--~~~~~vvVvG~G~~g~e~A~~l~~~g~~v~------------------~~~~~l~~  242 (469)
                       +.+++++.++..+...+...+  ..+++++|||+|++|+|+|..|.++|.+|+                  .+.+.+++
T Consensus       161 ~~~~~v~~~~~~~~~~~~~~~l~~~~~~~vvViGgG~~g~e~A~~l~~~g~~Vtlv~~~~~~l~~~~~~~~~~l~~~l~~  240 (588)
T 3ics_A          161 EEAKALFTLRNVPDTDRIKAYIDEKKPRHATVIGGGFIGVEMVENLRERGIEVTLVEMANQVMPPIDYEMAAYVHEHMKN  240 (588)
T ss_dssp             TTCTTEEECSSHHHHHHHHHHHHHHCCSEEEEECCSHHHHHHHHHHHHTTCEEEEECSSSSSCTTSCHHHHHHHHHHHHH
T ss_pred             ccCCCeEEeCCHHHHHHHHHHHhhcCCCeEEEECCCHHHHHHHHHHHhCCCeEEEEecCCcccccCCHHHHHHHHHHHHH
Confidence             678899999988887776654  368999999999999999999999999987                  45677889


Q ss_pred             cCcEEEcCCeEEEEEeCCCCcEEEEEcCCCCEEeCCEEEEccCCccCCchhhhcCCccc-CCCEEeCCCCCCCCCceEEe
Q 012165          243 NGVKFVKGASIKNLEAGSDGRVAAVKLEDGSTIDADTIVIGIGAKPTVSPFERVGLNSS-VGGIQVDGQFRTRMPGIFAI  321 (469)
Q Consensus       243 ~gV~~~~~~~v~~i~~~~~~~v~~v~~~~g~~i~~D~vi~a~G~~p~~~~~~~~gl~~~-~g~i~Vd~~~~t~~~~Vfa~  321 (469)
                      .||++++++.|++++.. ++   .|.+.+|+++++|.||+|+|++|++++++.+|++.+ +|+|.||+++||+.|+|||+
T Consensus       241 ~GV~i~~~~~v~~i~~~-~~---~v~~~~g~~i~~D~Vi~a~G~~p~~~~l~~~g~~~~~~g~i~vd~~~~t~~~~IyA~  316 (588)
T 3ics_A          241 HDVELVFEDGVDALEEN-GA---VVRLKSGSVIQTDMLILAIGVQPESSLAKGAGLALGVRGTIKVNEKFQTSDPHIYAI  316 (588)
T ss_dssp             TTCEEECSCCEEEEEGG-GT---EEEETTSCEEECSEEEECSCEEECCHHHHHTTCCBCGGGCBCCCTTSBCSSTTEEEC
T ss_pred             cCCEEEECCeEEEEecC-CC---EEEECCCCEEEcCEEEEccCCCCChHHHHhcCceEcCCCCEEECCccccCCCCEEEe
Confidence            99999999999999853 22   477889999999999999999999999999999875 68899999999999999999


Q ss_pred             ccccccCCccCCcccccchHHHHHHHHHHHHHHHhcCCCCCC-CCCCceeeecccccCCCcceeeEEeecCCCc------
Q 012165          322 GDVAAFPLKMYDRTARVEHVDHARQSAQHCIKALLSAQTHTY-DYLPYFYSRVFEYEGSPRKVWWQFFGDNVGE------  394 (469)
Q Consensus       322 GD~a~~~~~~~~~~~~~~~~~~A~~~a~~~a~~i~~~~~~~~-~~~p~~~~~~~~~~g~~~~~~~~~~G~~~~~------  394 (469)
                      |||+..+....|.......+..|..||+.+|++|++.....+ ..+|..+...|+.+       +..+|.++.+      
T Consensus       317 GD~~~~~~~~~g~~~~~~~~~~A~~~g~~aa~~i~g~~~~~~~~~~~~~~~~~~~~~-------~a~vGlte~~a~~~g~  389 (588)
T 3ics_A          317 GDAIEVKDFVTETETMIPLAWPANRQGRMLADIIHGHTDSLYKGTLGTSVAKVFDLT-------VATTGLNEKILKRLNI  389 (588)
T ss_dssp             GGGBCEEBTTTCCEECCCCHHHHHHHHHHHHHHHTTCCSSCCCCBCCCEEEEETTEE-------EEEEECCHHHHHHTTC
T ss_pred             eeeeecccccCCcccccccHHHHHHHHHHHHHHhcCCCccccCCcccceEEEECCeE-------EEEecCCHHHHHHcCC
Confidence            999987655445444455777899999999999997223334 34555544444432       5556654311      


Q ss_pred             ---EEE---Ecc--C----CCcEEEEEEe--CCEEEEEEeecCC-hHH-hHHHHHHHhCCCCCC
Q 012165          395 ---TIE---IGN--F----DPKIATFWID--SGKLKGVLVESGS-PEE-FQLLPTLARSQPFVD  442 (469)
Q Consensus       395 ---~~~---~~~--~----~~~~~~~~~~--~~~l~g~~~~~~~-~~~-~~~~~~~~~~~~~~~  442 (469)
                         ...   ...  .    ...+.|+.++  +++|+|+++++.+ +.+ +..+..+|+.+.+++
T Consensus       390 ~~~~~~~~~~~~~~~~~~~~~~~~k~i~~~~~~~ilG~~~~g~~~~~e~i~~~~~ai~~~~t~~  453 (588)
T 3ics_A          390 PYEVVHVQANSHAGYYPNATPVLIKLIFNKDSGKIYGAQTLGRDGVDKRMDVIATAIKANLTVL  453 (588)
T ss_dssp             CCEEEEEEEESSCTTSTTCCEEEEEEEECTTTCBEEEEEEEESSSHHHHHHHHHHHHHTTCBTT
T ss_pred             CeEEEEEecCCccccCCCCceEEEEEEEECCCCeEEEEEEEcCCcHHHHHHHHHHHHHcCCCHH
Confidence               111   111  0    1236777774  6999999986654 554 555566678887776

>1mo9_A ORF3; nucleotide binding motifs, nucleotide binding domain, oxidor; HET: FAD KPC; 1.65A {Xanthobacter autotrophicus} SCOP: c.3.1.5 c.3.1.5 d.87.1.1 PDB: 1mok_A* 2c3c_A* 2c3d_A* 3q6j_A*

Probab=100.00  E-value=2.6e-40  Score=341.33  Aligned_cols=386  Identities=21%  Similarity=0.289  Sum_probs=270.0

Q ss_pred             CCCCCCcEEEEcCcHHHHHHHHHHHHcCCCCCcEEEEcCCCCCCCC----CCCCcccccC-----------C----CCCC
Q 012165           47 FANENREFVIVGGGNAAGYAARTFVEHGMADGRLCIVSKEAYAPYE----RPALTKGYLF-----------P----LDKK  107 (469)
Q Consensus        47 ~~~~~~~vvIIGgG~AGl~aA~~L~~~g~~~~~V~vie~~~~~~~~----~~~l~~~~~~-----------~----~~~~  107 (469)
                      .++.++||+|||||+||+++|.+|++.|+   +|+|||+++..+..    .+..++.++.           .    ....
T Consensus        39 ~~~~~~dVvIIGgG~aGl~aA~~l~~~G~---~V~liE~~~~~GG~~~~~g~~p~k~l~~~~~~~~~~~~~~~~g~~~~~  115 (523)
T 1mo9_A           39 NDPREYDAIFIGGGAAGRFGSAYLRAMGG---RQLIVDRWPFLGGSCPHNACVPHHLFSDCAAELMLARTFSGQYWFPDM  115 (523)
T ss_dssp             TCCSCBSEEEECCSHHHHHHHHHHHHTTC---CEEEEESSSSSSCHHHHHSHHHHHHHHHHHHHHHHHHHTTTSTTCCCC
T ss_pred             CCCCcCCEEEECCCHHHHHHHHHHHHCCC---CEEEEeCCCCCCCcccccCcCchHHHHHHHHHHHHHhhhhhcCcHHHH
Confidence            34556899999999999999999999987   79999998743211    0000010000           0    0000


Q ss_pred             CCCCCCCccccCCCCCCCCH---hHH-----HHCCcEEEeCCcEEEEeCCCcEEEeCCCeEEEeccEEeccCCCCCcCCC
Q 012165          108 PARLPGFHTCVGSGGERQTP---EWY-----KEKGIEMIYQDPVTSIDIEKQTLITNSGKLLKYGSLIVATGCTASRFPE  179 (469)
Q Consensus       108 ~~~~~~~~~~~~~~~~~~~~---~~~-----~~~~i~~~~~~~v~~id~~~~~v~~~~g~~~~yd~lVlAtG~~~~~~~~  179 (469)
                      ...++...... ........   +++     ++.++++++..++..++.  ++|.+. ++.+.||+||+|||++|. .|.
T Consensus       116 ~~~~~~~~~~~-~~l~~~~~~~~~~~~~~~~~~~gv~~~~~~~v~~i~~--~~v~~~-g~~~~~d~lViATGs~p~-~p~  190 (523)
T 1mo9_A          116 TEKVVGIKEVV-DLFRAGRNGPHGIMNFQSKEQLNLEYILNCPAKVIDN--HTVEAA-GKVFKAKNLILAVGAGPG-TLD  190 (523)
T ss_dssp             TTCCCCHHHHH-HHHHHHTHHHHHHHHHHHHHTSCCCEEESSCCEEEET--TEEEET-TEEEEBSCEEECCCEECC-CCC
T ss_pred             HhhhhhHHHHH-HHHHhhhhhhhhhhhhcccccCCcEEEEeeEEEEeeC--CEEEEC-CEEEEeCEEEECCCCCCC-CCC
Confidence            00000000000 00000022   455     778999984568888885  567776 778999999999999987 566


Q ss_pred             CCCCCcCcEEEecCHHHHHHHH-HhhhcC-CeEEEEcCChHHHHHHHHHHhCCCeEe------------------eeHHH
Q 012165          180 KIGGYLPGVHYIRDVADADALI-SSLEKA-KKVVVVGGGYIGMEVAAAAVGWKLDTT------------------RYEQL  239 (469)
Q Consensus       180 ~~g~~~~~v~~~~~~~~~~~~~-~~~~~~-~~vvVvG~G~~g~e~A~~l~~~g~~v~------------------~~~~~  239 (469)
                      ++|.+.+++++.      +.+. .....+ ++++|||+|++|+|+|..+.++|.+++                  .+.+.
T Consensus       191 i~G~~~~~v~~~------~~~~~~l~~~~g~~vvViGgG~~g~E~A~~l~~~G~~Vtlv~~~~~~l~~~~~~~~~~l~~~  264 (523)
T 1mo9_A          191 VPGVNAKGVFDH------ATLVEELDYEPGSTVVVVGGSKTAVEYGCFFNATGRRTVMLVRTEPLKLIKDNETRAYVLDR  264 (523)
T ss_dssp             STTTTSBTEEEH------HHHHHHCCSCCCSEEEEECCSHHHHHHHHHHHHTTCEEEEECSSCTTTTCCSHHHHHHHHHH
T ss_pred             CCCcccCcEeeH------HHHHHHHHhcCCCeEEEECCCHHHHHHHHHHHHcCCeEEEEEecCcccccccHHHHHHHHHH
Confidence            777655566543      2222 222234 999999999999999999999999987                  44677


Q ss_pred             HHHcCcEEEcCCeEEEEEeCCCCcE--EEEEcCCCC-EEeCCEEEEccCCccCCc-hhhhcCCccc-CCCEEeCCCCCCC
Q 012165          240 YQQNGVKFVKGASIKNLEAGSDGRV--AAVKLEDGS-TIDADTIVIGIGAKPTVS-PFERVGLNSS-VGGIQVDGQFRTR  314 (469)
Q Consensus       240 l~~~gV~~~~~~~v~~i~~~~~~~v--~~v~~~~g~-~i~~D~vi~a~G~~p~~~-~~~~~gl~~~-~g~i~Vd~~~~t~  314 (469)
                      +++.||++++++.|++++..+++.+  ..|.+++|+ ++++|.||+|+|++|+++ +++++|++.+ +|+|.||+++||+
T Consensus       265 l~~~GV~i~~~~~V~~i~~~~~~~v~~~~v~~~~G~~~i~aD~Vv~A~G~~p~~~~~l~~~gl~~~~~G~i~Vd~~~~t~  344 (523)
T 1mo9_A          265 MKEQGMEIISGSNVTRIEEDANGRVQAVVAMTPNGEMRIETDFVFLGLGEQPRSAELAKILGLDLGPKGEVLVNEYLQTS  344 (523)
T ss_dssp             HHHTTCEEESSCEEEEEEECTTSBEEEEEEEETTEEEEEECSCEEECCCCEECCHHHHHHHTCCBCTTSCBCCCTTSBCS
T ss_pred             HHhCCcEEEECCEEEEEEEcCCCceEEEEEEECCCcEEEEcCEEEECcCCccCCccCHHHcCCccCCCCCEEECCCCccC
Confidence            8899999999999999986545543  357888887 899999999999999998 7999999875 6779999999999


Q ss_pred             CCceEEeccccccCCccCCcccccchHHHHHHHHHHHHHHHhcCCCC-CCCCCCceeeecccccCCCcceeeEEeecCCC
Q 012165          315 MPGIFAIGDVAAFPLKMYDRTARVEHVDHARQSAQHCIKALLSAQTH-TYDYLPYFYSRVFEYEGSPRKVWWQFFGDNVG  393 (469)
Q Consensus       315 ~~~Vfa~GD~a~~~~~~~~~~~~~~~~~~A~~~a~~~a~~i~~~~~~-~~~~~p~~~~~~~~~~g~~~~~~~~~~G~~~~  393 (469)
                      .|+|||+|||+..+.          .+..|..||+.+|.||++.... .+..+|+++.....         +..+|....
T Consensus       345 ~~~IyA~GD~~~~~~----------~~~~A~~~g~~aa~~i~g~~~~~~~~~~p~~~~~~~~---------~a~vG~~e~  405 (523)
T 1mo9_A          345 VPNVYAVGDLIGGPM----------EMFKARKSGCYAARNVMGEKISYTPKNYPDFLHTHYE---------VSFLGMGEE  405 (523)
T ss_dssp             STTEEECGGGGCSSC----------SHHHHHHHHHHHHHHHTTCCCCCCCCSCCEEEESSSE---------EEEEECCHH
T ss_pred             CCCEEEEeecCCCcc----------cHHHHHHHHHHHHHHHcCCCCCCCCCCCCeEEECCCc---------eEEEeCCHH
Confidence            999999999997542          3445999999999999974322 25667875432111         445554321


Q ss_pred             -------cEEEE----c------------------------cCCCcEEEEEEe--CCEEEEEEeecCChHH-hHHHHHHH
Q 012165          394 -------ETIEI----G------------------------NFDPKIATFWID--SGKLKGVLVESGSPEE-FQLLPTLA  435 (469)
Q Consensus       394 -------~~~~~----~------------------------~~~~~~~~~~~~--~~~l~g~~~~~~~~~~-~~~~~~~~  435 (469)
                             ++...    .                        .....|.|++++  +++|+|+++++..+.+ +..+..+|
T Consensus       406 ~a~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~~~~~~~~~ilG~~~~g~~a~e~i~~~~~ai  485 (523)
T 1mo9_A          406 EARAAGHEIVTIKMPPDTENGLNVALPASDRTMLYAFGKGTAHMSGFQKIVIDAKTRKVLGAHHVGYGAKDAFQYLNVLI  485 (523)
T ss_dssp             HHHHTTCCEEEEEESCCSTTTTCSSCSCCTTTHHHHHSTTTGGGGCEEEEEEETTTCBEEEEEEEESSCHHHHHHHHHHH
T ss_pred             HHHhCCCCEEEEEEecccccccccccccccccccceEEeecCCCCEEEEEEEECCCCEEEEEEEECCCHHHHHHHHHHHH
Confidence                   11110    0                        011237788775  6999999987776655 55567778


Q ss_pred             hCCCCCCh--hh--hcCCCcHHHHHHHHHhcCCc
Q 012165          436 RSQPFVDK--AK--LQQASSVEEALEIARAALPV  465 (469)
Q Consensus       436 ~~~~~~~~--~~--~~~~~~~~~~~~~~~~~~~~  465 (469)
                      +.+.+++.  ..  +..||++.|+++.+.+.+.+
T Consensus       486 ~~~~t~~~l~~~~~~~~~Pt~~e~~~~~~~~~~~  519 (523)
T 1mo9_A          486 KQGLTVDELGDMDELFLNPTHFIQLSRLRAGSKN  519 (523)
T ss_dssp             HTTCBHHHHHTSCCCSSCSCCHHHHHHHHTTCSS
T ss_pred             HCCCCHHHHHhCCcceECCCHHHHHHHHHHhhHh
Confidence            88888762  22  57789999999999887654

>2qae_A Lipoamide, dihydrolipoyl dehydrogenase; FAD-cystine-oxidoreductase, homodimer; HET: FAD; 1.90A {Trypanosoma cruzi}

Probab=100.00  E-value=1.5e-41  Score=346.59  Aligned_cols=383  Identities=17%  Similarity=0.231  Sum_probs=261.8

Q ss_pred             CCcEEEEcCcHHHHHHHHHHHHcCCCCCcEEEEcCCCCCCCCC---CCC-cccccC---------------C--C-CCCC
Q 012165           51 NREFVIVGGGNAAGYAARTFVEHGMADGRLCIVSKEAYAPYER---PAL-TKGYLF---------------P--L-DKKP  108 (469)
Q Consensus        51 ~~~vvIIGgG~AGl~aA~~L~~~g~~~~~V~vie~~~~~~~~~---~~l-~~~~~~---------------~--~-~~~~  108 (469)
                      ++||+|||||+||++||.+|++.|+   +|+|||+++.++..-   ... ++.++.               .  . ....
T Consensus         2 ~~dvvIIGgG~aGl~aA~~l~~~g~---~V~lie~~~~~GG~~~~~g~~psk~l~~~~~~~~~~~~~~~~~g~~~~~~~~   78 (468)
T 2qae_A            2 PYDVVVIGGGPGGYVASIKAAQLGM---KTACVEKRGALGGTCLNVGCIPSKALLHATHLYHDAHANFARYGLMGGEGVT   78 (468)
T ss_dssp             CEEEEEECCSHHHHHHHHHHHHTTC---CEEEEESSSSSSHHHHHHSHHHHHHHHHHHHHHHHHHHTHHHHTEECGGGCE
T ss_pred             CCCEEEECCCHHHHHHHHHHHHCCC---eEEEEeCCCCcCCcCCCcCcHhHHHHHHHHHHHHHHHHHHHhcCcccCCCCc
Confidence            4799999999999999999999987   799999986542110   000 000000               0  0 0000


Q ss_pred             CCCCCCcccc---CCCCCCCCHhHHHHCCcEEEeCCcEEEEeCCCcEEEeCCC--eEEEeccEEeccCCCCCcCCCCCCC
Q 012165          109 ARLPGFHTCV---GSGGERQTPEWYKEKGIEMIYQDPVTSIDIEKQTLITNSG--KLLKYGSLIVATGCTASRFPEKIGG  183 (469)
Q Consensus       109 ~~~~~~~~~~---~~~~~~~~~~~~~~~~i~~~~~~~v~~id~~~~~v~~~~g--~~~~yd~lVlAtG~~~~~~~~~~g~  183 (469)
                      .++..+....   .........+++++.+++++.++ +..++....+|.+.+|  .++.||+||+|||++|.. |+++|.
T Consensus        79 ~~~~~~~~~~~~~~~~l~~~~~~~~~~~~v~~~~g~-~~~i~~~~~~v~~~~G~~~~~~~d~lviAtG~~p~~-p~~~g~  156 (468)
T 2qae_A           79 MDSAKMQQQKERAVKGLTGGVEYLFKKNKVTYYKGE-GSFETAHSIRVNGLDGKQEMLETKKTIIATGSEPTE-LPFLPF  156 (468)
T ss_dssp             ECHHHHHHHHHHHHHHHHHHHHHHHHHHTCEEEEEE-EEEEETTEEEEEETTSCEEEEEEEEEEECCCEEECC-BTTBCC
T ss_pred             cCHHHHHHHHHHHHHHHHHHHHHHHHhCCCEEEEEE-EEEeeCCEEEEEecCCceEEEEcCEEEECCCCCcCC-CCCCCC
Confidence            0000000000   00000001345667899999875 4558876667777777  689999999999999874 445564


Q ss_pred             CcCcEEEecCHHHHHHHHHhhhcCCeEEEEcCChHHHHHHHHHHhCCCeEe------------------eeHHHH-HHcC
Q 012165          184 YLPGVHYIRDVADADALISSLEKAKKVVVVGGGYIGMEVAAAAVGWKLDTT------------------RYEQLY-QQNG  244 (469)
Q Consensus       184 ~~~~v~~~~~~~~~~~~~~~~~~~~~vvVvG~G~~g~e~A~~l~~~g~~v~------------------~~~~~l-~~~g  244 (469)
                      +.+++++   ..+   +......+++++|||+|++|+|+|..|.++|.+|+                  .+.+.+ ++.|
T Consensus       157 ~~~~v~t---~~~---~~~~~~~~~~vvViGgG~~g~E~A~~l~~~g~~Vtlv~~~~~~l~~~d~~~~~~l~~~l~~~~g  230 (468)
T 2qae_A          157 DEKVVLS---STG---ALALPRVPKTMVVIGGGVIGLELGSVWARLGAEVTVVEFAPRCAPTLDEDVTNALVGALAKNEK  230 (468)
T ss_dssp             CSSSEEC---HHH---HHTCSSCCSEEEEECCSHHHHHHHHHHHHTTCEEEEECSSSSSSTTSCHHHHHHHHHHHHHHTC
T ss_pred             CcCceec---hHH---HhhcccCCceEEEECCCHHHHHHHHHHHHhCCEEEEEecCCcccccCCHHHHHHHHHHHhhcCC
Confidence            4444433   233   22223457999999999999999999999999987                  345678 8999


Q ss_pred             cEEEcCCeEEEEEeCCCCcEEEEEcC--CC--CEEeCCEEEEccCCccCCch--hhhcCCccc-CCCEEeCCCCCCCCCc
Q 012165          245 VKFVKGASIKNLEAGSDGRVAAVKLE--DG--STIDADTIVIGIGAKPTVSP--FERVGLNSS-VGGIQVDGQFRTRMPG  317 (469)
Q Consensus       245 V~~~~~~~v~~i~~~~~~~v~~v~~~--~g--~~i~~D~vi~a~G~~p~~~~--~~~~gl~~~-~g~i~Vd~~~~t~~~~  317 (469)
                      |++++++++++++.++++ + .+.++  +|  +++++|.||+|+|++||+++  ++++|++.+ +|+|.||+++||+.|+
T Consensus       231 v~i~~~~~v~~i~~~~~~-~-~v~~~~~~g~~~~i~~D~vv~a~G~~p~~~~l~l~~~gl~~~~~G~i~vd~~~~t~~~~  308 (468)
T 2qae_A          231 MKFMTSTKVVGGTNNGDS-V-SLEVEGKNGKRETVTCEALLVSVGRRPFTGGLGLDKINVAKNERGFVKIGDHFETSIPD  308 (468)
T ss_dssp             CEEECSCEEEEEEECSSS-E-EEEEECC---EEEEEESEEEECSCEEECCTTSCHHHHTCCBCTTSCBCCCTTSBCSSTT
T ss_pred             cEEEeCCEEEEEEEcCCe-E-EEEEEcCCCceEEEECCEEEECCCcccCCCCCCchhcCCccCCCCCEeECCCcccCCCC
Confidence            999999999999865333 3 45554  66  67999999999999999988  788898876 5779999999999999


Q ss_pred             eEEeccccc-cCCccCCcccccchHHHHHHHHHHHHHHHhcCCCCC--CCCCCceeeecccccCCCcceeeEEeecCCC-
Q 012165          318 IFAIGDVAA-FPLKMYDRTARVEHVDHARQSAQHCIKALLSAQTHT--YDYLPYFYSRVFEYEGSPRKVWWQFFGDNVG-  393 (469)
Q Consensus       318 Vfa~GD~a~-~~~~~~~~~~~~~~~~~A~~~a~~~a~~i~~~~~~~--~~~~p~~~~~~~~~~g~~~~~~~~~~G~~~~-  393 (469)
                      |||+|||+. .+.          .+..|..||+.+|.+|++.. .+  +..+|+  ...++.+       +..+|.... 
T Consensus       309 IyA~GD~~~~~~~----------~~~~A~~~g~~aa~~i~~~~-~~~~~~~~p~--~~~~~~~-------~a~vG~~e~~  368 (468)
T 2qae_A          309 VYAIGDVVDKGPM----------LAHKAEDEGVACAEILAGKP-GHVNYGVIPA--VIYTMPE-------VASVGKSEDE  368 (468)
T ss_dssp             EEECGGGBSSSCS----------CHHHHHHHHHHHHHHHTTCC-CCCCTTSCCE--EECSSSE-------EEEEECCHHH
T ss_pred             EEEeeccCCCCCc----------cHhHHHHHHHHHHHHHcCCC-ccCCCCCCCE--EEECCCc-------eEEEeCCHHH
Confidence            999999998 432          34569999999999999743 33  444564  2222221       555665421 


Q ss_pred             ------cEEEEc------------cCCCcEEEEEEe--CCEEEEEEeecCChHH-hHHHHHHHhCCCCCCh--hhhcCCC
Q 012165          394 ------ETIEIG------------NFDPKIATFWID--SGKLKGVLVESGSPEE-FQLLPTLARSQPFVDK--AKLQQAS  450 (469)
Q Consensus       394 ------~~~~~~------------~~~~~~~~~~~~--~~~l~g~~~~~~~~~~-~~~~~~~~~~~~~~~~--~~~~~~~  450 (469)
                            +.....            .....|.|++++  +++|+|+++++..+.+ +..+..+|+.+.+++.  ..+..||
T Consensus       369 a~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~kl~~~~~~~~ilG~~~~g~~a~e~i~~~~~ai~~~~~~~~l~~~~~~~P  448 (468)
T 2qae_A          369 LKKEGVAYKVGKFPFNANSRAKAVSTEDGFVKVLVDKATDRILGVHIVCTTAGELIGEACLAMEYGASSEDVGRTCHAHP  448 (468)
T ss_dssp             HHHTTCCEEEEEEEGGGCHHHHHTTCCCCEEEEEEETTTCBEEEEEEEETTHHHHHHHHHHHHHTTCBHHHHHTSCCCSS
T ss_pred             HHhcCCCEEEEEEecccchhhhhcCCCcEEEEEEEECCCCEEEEEEEECCCHHHHHHHHHHHHHCCCCHHHHhhcccCCC
Confidence                  111110            112358888886  6999999987777655 5556667888887763  2347789


Q ss_pred             cHHHHHHHHHhcCCcc
Q 012165          451 SVEEALEIARAALPVE  466 (469)
Q Consensus       451 ~~~~~~~~~~~~~~~~  466 (469)
                      ++.|+++.|++++..+
T Consensus       449 t~~e~~~~~~~~~~~~  464 (468)
T 2qae_A          449 TMSEALKEACMALFAK  464 (468)
T ss_dssp             CTHHHHHHHHHHHHSC
T ss_pred             CHHHHHHHHHHHHhcc
Confidence            9999999998765543

>1xdi_A RV3303C-LPDA; reductase, FAD, NAD, NADP, unkno function; HET: FAD; 2.81A {Mycobacterium tuberculosis} SCOP: c.3.1.5 d.87.1.1

Probab=100.00  E-value=8.2e-41  Score=343.57  Aligned_cols=382  Identities=18%  Similarity=0.206  Sum_probs=265.7

Q ss_pred             CCcEEEEcCcHHHHHHHHHHHHc---CCCCCcEEEEcCCCCCCCC---CCCC-ccccc---------CC--CCCC-----
Q 012165           51 NREFVIVGGGNAAGYAARTFVEH---GMADGRLCIVSKEAYAPYE---RPAL-TKGYL---------FP--LDKK-----  107 (469)
Q Consensus        51 ~~~vvIIGgG~AGl~aA~~L~~~---g~~~~~V~vie~~~~~~~~---~~~l-~~~~~---------~~--~~~~-----  107 (469)
                      ++||+|||||+||+++|.+|++.   |.   +|+|||+++ .+..   .... ++.++         ..  ....     
T Consensus         2 ~~dVvIIGgG~aGl~aA~~l~~~~~~G~---~V~liE~~~-~GG~~~~~g~~psk~l~~~a~~~~~~~~~~~~g~~~~~~   77 (499)
T 1xdi_A            2 VTRIVILGGGPAGYEAALVAATSHPETT---QVTVIDCDG-IGGAAVLDDCVPSKTFIASTGLRTELRRAPHLGFHIDFD   77 (499)
T ss_dssp             CEEEEEECCSHHHHHHHHHHHHHCTTTE---EEEEEESSC-TTHHHHHTSHHHHHHHHHHHHHHHHHTTTTTTTBC----
T ss_pred             CCCEEEECCCHHHHHHHHHHHhCCCCcC---EEEEEeCCC-cCCcccCcCccchHHHHHHHHHHHHHHHHHhCCCccccC
Confidence            47999999999999999999999   76   899999986 2110   0000 00000         00  0000     


Q ss_pred             --CCCCCCCcccc---CCCCCCCCHhHHHHCCcEEEeCCcEEEEeC------CCcEEEeCCCe--EEEeccEEeccCCCC
Q 012165          108 --PARLPGFHTCV---GSGGERQTPEWYKEKGIEMIYQDPVTSIDI------EKQTLITNSGK--LLKYGSLIVATGCTA  174 (469)
Q Consensus       108 --~~~~~~~~~~~---~~~~~~~~~~~~~~~~i~~~~~~~v~~id~------~~~~v~~~~g~--~~~yd~lVlAtG~~~  174 (469)
                        ..++..+....   .........+++++.+++++.+ ++..+++      ....|.+.+|+  .+.||+||+|||++|
T Consensus        78 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gv~~~~g-~~~~i~~~~~~~~~~~~V~~~~g~~~~~~~d~lviATGs~p  156 (499)
T 1xdi_A           78 DAKISLPQIHARVKTLAAAQSADITAQLLSMGVQVIAG-RGELIDSTPGLARHRIKATAADGSTSEHEADVVLVATGASP  156 (499)
T ss_dssp             --CBCHHHHHHHHHHHHHHHHHHHHHHHHHTTCEEEES-EEEECCSSSCCSSEEEEEECTTSCEEEEEESEEEECCCEEE
T ss_pred             CCccCHHHHHHHHHHHHHHHHHHHHHHHHhCCCEEEEe-EEEEecCcccCCCCEEEEEeCCCcEEEEEeCEEEEcCCCCC
Confidence              00000000000   0000001245567789999997 5777887      23355566676  799999999999998


Q ss_pred             CcCCCCCCCCcCcEEEecCHHHHHHHHHhhhcCCeEEEEcCChHHHHHHHHHHhCCCeEe------------------ee
Q 012165          175 SRFPEKIGGYLPGVHYIRDVADADALISSLEKAKKVVVVGGGYIGMEVAAAAVGWKLDTT------------------RY  236 (469)
Q Consensus       175 ~~~~~~~g~~~~~v~~~~~~~~~~~~~~~~~~~~~vvVvG~G~~g~e~A~~l~~~g~~v~------------------~~  236 (469)
                      . .|+++|.+..++++..+..      .....+++++|||+|++|+|+|..+.++|.+|+                  .+
T Consensus       157 ~-~p~i~g~~~~~v~~~~~~~------~~~~~~~~vvViGgG~ig~E~A~~l~~~g~~Vtlv~~~~~~l~~~d~~~~~~l  229 (499)
T 1xdi_A          157 R-ILPSAQPDGERILTWRQLY------DLDALPDHLIVVGSGVTGAEFVDAYTELGVPVTVVASQDHVLPYEDADAALVL  229 (499)
T ss_dssp             C-CCGGGCCCSSSEEEGGGGG------GCSSCCSSEEEESCSHHHHHHHHHHHHTTCCEEEECSSSSSSCCSSHHHHHHH
T ss_pred             C-CCCCCCCCcCcEEehhHhh------hhhccCCeEEEECCCHHHHHHHHHHHHcCCeEEEEEcCCccccccCHHHHHHH
Confidence            7 4556675555565543222      222357899999999999999999999999887                  44


Q ss_pred             HHHHHHcCcEEEcCCeEEEEEeCCCCcEEEEEcCCCCEEeCCEEEEccCCccCCch--hhhcCCccc-CCCEEeCCCCCC
Q 012165          237 EQLYQQNGVKFVKGASIKNLEAGSDGRVAAVKLEDGSTIDADTIVIGIGAKPTVSP--FERVGLNSS-VGGIQVDGQFRT  313 (469)
Q Consensus       237 ~~~l~~~gV~~~~~~~v~~i~~~~~~~v~~v~~~~g~~i~~D~vi~a~G~~p~~~~--~~~~gl~~~-~g~i~Vd~~~~t  313 (469)
                      .+.+++.||++++++.|++++.++ +.+ .+.+.+|+++++|.||+|+|++|++++  ++++|++.+ +|+|.||+++||
T Consensus       230 ~~~l~~~GV~i~~~~~V~~i~~~~-~~v-~v~~~~g~~i~aD~Vv~a~G~~p~~~~l~l~~~gl~~~~~G~i~Vd~~~~t  307 (499)
T 1xdi_A          230 EESFAERGVRLFKNARAASVTRTG-AGV-LVTMTDGRTVEGSHALMTIGSVPNTSGLGLERVGIQLGRGNYLTVDRVSRT  307 (499)
T ss_dssp             HHHHHHTTCEEETTCCEEEEEECS-SSE-EEEETTSCEEEESEEEECCCEEECCSSSCTTTTTCCCBTTTBCCCCSSSBC
T ss_pred             HHHHHHCCCEEEeCCEEEEEEEeC-CEE-EEEECCCcEEEcCEEEECCCCCcCCCcCCchhcCceECCCCCEEECCCccc
Confidence            677889999999999999998643 334 577888989999999999999999988  788898876 477999999999


Q ss_pred             CCCceEEeccccccCCccCCcccccchHHHHHHHHHHHHHHHhcCCCC--CCCCCCceeeecccccCCCcceeeEEeecC
Q 012165          314 RMPGIFAIGDVAAFPLKMYDRTARVEHVDHARQSAQHCIKALLSAQTH--TYDYLPYFYSRVFEYEGSPRKVWWQFFGDN  391 (469)
Q Consensus       314 ~~~~Vfa~GD~a~~~~~~~~~~~~~~~~~~A~~~a~~~a~~i~~~~~~--~~~~~p~~~~~~~~~~g~~~~~~~~~~G~~  391 (469)
                      +.|+|||+|||+..+.          .+..|..+|+.+|++|++....  .|..+|+++  .++.       .+..+|..
T Consensus       308 ~~~~IyA~GD~~~~~~----------l~~~A~~~g~~aa~~i~g~~~~~~~~~~~p~~~--~~~~-------~~a~vG~~  368 (499)
T 1xdi_A          308 LATGIYAAGDCTGLLP----------LASVAAMQGRIAMYHALGEGVSPIRLRTVAATV--FTRP-------EIAAVGVP  368 (499)
T ss_dssp             SSTTEEECSGGGTSCS----------CHHHHHHHHHHHHHHHTTCCCCCCCGGGCEEEE--CSSS-------EEEEEESC
T ss_pred             CCCCEEEEeccCCCcc----------cHHHHHHHHHHHHHHhcCCCCccCCCCCCcEEE--EecC-------CceEeCCC
Confidence            9999999999998542          3446999999999999975222  345566543  2221       15667754


Q ss_pred             CC-------cEEE-E-----------ccCCCcEEEEEEe--CCEEEEEEeecCChHH-hHHHHHHHhCCCCCCh--hhhc
Q 012165          392 VG-------ETIE-I-----------GNFDPKIATFWID--SGKLKGVLVESGSPEE-FQLLPTLARSQPFVDK--AKLQ  447 (469)
Q Consensus       392 ~~-------~~~~-~-----------~~~~~~~~~~~~~--~~~l~g~~~~~~~~~~-~~~~~~~~~~~~~~~~--~~~~  447 (469)
                      ..       +... .           ......|.|++++  +|+|+|+++++..+.+ +..+..+|+.+.+++.  ..+.
T Consensus       369 e~~a~~~g~~~~~~~~~~~~~~~~~~~~~~~g~~k~~~~~~~~~ilG~~~~g~~a~~~i~~~~~ai~~~~~~~~l~~~~~  448 (499)
T 1xdi_A          369 QSVIDAGSVAARTIMLPLRTNARAKMSEMRHGFVKIFCRRSTGVVIGGVVVAPIASELILPIAVAVQNRITVNELAQTLA  448 (499)
T ss_dssp             HHHHHHTSSCEEEEEEESTTSHHHHHTTCSSCEEEEEEETTTCBEEEEEEEETTHHHHHHHHHHHHHHTCBHHHHHTSBC
T ss_pred             HHHHHhCCCCEEEEEEecCcccceeecCCCceEEEEEEECCCCEEEEEEEECCchHHHHHHHHHHHHCCCCHHHHhcccc
Confidence            32       1111 0           0112347888887  5999999987777655 4556667888887763  2356


Q ss_pred             CCCcHHHHHHHHHhcCCc
Q 012165          448 QASSVEEALEIARAALPV  465 (469)
Q Consensus       448 ~~~~~~~~~~~~~~~~~~  465 (469)
                      .+|++.|+++.|+.++..
T Consensus       449 ~~Pt~~e~~~~~~~~~~~  466 (499)
T 1xdi_A          449 VYPSLSGSITEAARRLMA  466 (499)
T ss_dssp             CSSSTHHHHHHHHHHHCC
T ss_pred             cCCCchHHHHHHHHHHhc
Confidence            789999999999876554

>1zk7_A HGII, reductase, mercuric reductase; mercuric ION reductase, oxidoreductase; HET: FAD; 1.60A {Pseudomonas aeruginosa} PDB: 1zx9_A*

Probab=100.00  E-value=1.1e-39  Score=332.56  Aligned_cols=380  Identities=17%  Similarity=0.204  Sum_probs=262.5

Q ss_pred             CCCcEEEEcCcHHHHHHHHHHHHcCCCCCcEEEEcCCCCCCCC---------------------CCCCcccc-cCCCCCC
Q 012165           50 ENREFVIVGGGNAAGYAARTFVEHGMADGRLCIVSKEAYAPYE---------------------RPALTKGY-LFPLDKK  107 (469)
Q Consensus        50 ~~~~vvIIGgG~AGl~aA~~L~~~g~~~~~V~vie~~~~~~~~---------------------~~~l~~~~-~~~~~~~  107 (469)
                      .++||+|||||+||+++|.+|++.|+   +|+|||++.. +..                     .+..+. + -......
T Consensus         3 ~~~dvvIIGgG~aGl~aA~~l~~~g~---~V~lie~~~~-GG~~~~~g~ip~k~l~~~~~~~~~~~~~~~-~~g~~~~~~   77 (467)
T 1zk7_A            3 PPVQVAVIGSGGAAMAAALKAVEQGA---QVTLIERGTI-GGTCVNVGCVPSKIMIRAAHIAHLRRESPF-DGGIAATVP   77 (467)
T ss_dssp             CCCEEEEECCSHHHHHHHHHHHHTTC---EEEEEESSST-THHHHHHSHHHHHHHHHHHHHHHHHHCCTT-TTTSCCCCC
T ss_pred             CcCCEEEECCCHHHHHHHHHHHHCCC---EEEEEeCCCC-CccccCCCccchHHHHHHHHHHHHHhhhhh-cCCccCCCC
Confidence            46899999999999999999999987   8999998832 100                     000000 0 0000000


Q ss_pred             CCCCCCCccccC---CCCC-CCCHhHHHHC-CcEEEeCCcEEEEeCCCcEEEeCCC--eEEEeccEEeccCCCCCcCCCC
Q 012165          108 PARLPGFHTCVG---SGGE-RQTPEWYKEK-GIEMIYQDPVTSIDIEKQTLITNSG--KLLKYGSLIVATGCTASRFPEK  180 (469)
Q Consensus       108 ~~~~~~~~~~~~---~~~~-~~~~~~~~~~-~i~~~~~~~v~~id~~~~~v~~~~g--~~~~yd~lVlAtG~~~~~~~~~  180 (469)
                      ..++..+.....   .... ....+++++. +++++.+ ++..++....+|.+.+|  ++++||+||||||++|+ .|++
T Consensus        78 ~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~v~~~~g-~~~~~~~~~~~v~~~~g~~~~~~~d~lviAtGs~p~-~p~i  155 (467)
T 1zk7_A           78 TIDRSKLLAQQQARVDELRHAKYEGILGGNPAITVVHG-EARFKDDQSLTVRLNEGGERVVMFDRCLVATGASPA-VPPI  155 (467)
T ss_dssp             CCCHHHHHHHHHHHHHHHHHHHTHHHHTTCTTEEEEEE-EEEEEETTEEEEEETTSSEEEEECSEEEECCCEEEC-CCCC
T ss_pred             ccCHHHHHHHHHHHHHHHhhhhHHHHHhccCCeEEEEE-EEEEccCCEEEEEeCCCceEEEEeCEEEEeCCCCCC-CCCC
Confidence            000000000000   0000 0123455666 9999986 68888887777888888  67999999999999987 4656


Q ss_pred             CCCCcCcEEEecCHHHHHHHHHhhhcCCeEEEEcCChHHHHHHHHHHhCCCeEe-----------------eeHHHHHHc
Q 012165          181 IGGYLPGVHYIRDVADADALISSLEKAKKVVVVGGGYIGMEVAAAAVGWKLDTT-----------------RYEQLYQQN  243 (469)
Q Consensus       181 ~g~~~~~v~~~~~~~~~~~~~~~~~~~~~vvVvG~G~~g~e~A~~l~~~g~~v~-----------------~~~~~l~~~  243 (469)
                      +|.+..+++   +   .+.+.+....+++++|||+|++|+|+|..|.++|.+|+                 .+.+.+++.
T Consensus       156 ~G~~~~~~~---~---~~~~~~~~~~~~~vvViGgG~~g~E~A~~l~~~g~~Vtlv~~~~~~l~~~~~~~~~l~~~l~~~  229 (467)
T 1zk7_A          156 PGLKESPYW---T---STEALASDTIPERLAVIGSSVVALELAQAFARLGSKVTVLARNTLFFREDPAIGEAVTAAFRAE  229 (467)
T ss_dssp             TTTTTSCCB---C---HHHHHHCSSCCSEEEEECCSHHHHHHHHHHHHTTCEEEEECSSCTTTTSCHHHHHHHHHHHHHT
T ss_pred             CCCCcCcee---c---HHHHhcccccCCEEEEECCCHHHHHHHHHHHHcCCEEEEEEECCccCCCCHHHHHHHHHHHHhC
Confidence            664333322   2   33333334468999999999999999999999999987                 345678889


Q ss_pred             CcEEEcCCeEEEEEeCCCCcEEEEEcCCCCEEeCCEEEEccCCccCCch--hhhcCCccc-CCCEEeCCCCCCCCCceEE
Q 012165          244 GVKFVKGASIKNLEAGSDGRVAAVKLEDGSTIDADTIVIGIGAKPTVSP--FERVGLNSS-VGGIQVDGQFRTRMPGIFA  320 (469)
Q Consensus       244 gV~~~~~~~v~~i~~~~~~~v~~v~~~~g~~i~~D~vi~a~G~~p~~~~--~~~~gl~~~-~g~i~Vd~~~~t~~~~Vfa  320 (469)
                      ||++++++.|++++.+ ++ ...+.++ +.++++|.||+|+|.+|++++  ++.++++.+ +|+|.||+++||+.|+|||
T Consensus       230 Gv~i~~~~~v~~i~~~-~~-~~~v~~~-~~~i~aD~Vv~a~G~~p~~~~l~l~~~gl~~~~~G~i~vd~~~~t~~~~iya  306 (467)
T 1zk7_A          230 GIEVLEHTQASQVAHM-DG-EFVLTTT-HGELRADKLLVATGRTPNTRSLALDAAGVTVNAQGAIVIDQGMRTSNPNIYA  306 (467)
T ss_dssp             TCEEETTCCEEEEEEE-TT-EEEEEET-TEEEEESEEEECSCEEESCTTSCGGGGTCCBCTTSCBCCCTTCBCSSTTEEE
T ss_pred             CCEEEcCCEEEEEEEe-CC-EEEEEEC-CcEEEcCEEEECCCCCcCCCcCCchhcCCcCCCCCCEEECCCcccCCCCEEE
Confidence            9999999999999853 33 3356665 458999999999999999875  578888876 5679999999999999999


Q ss_pred             eccccccCCccCCcccccchHHHHHHHHHHHHHHHhcCCC-CCCCCCCceeeecccccCCCcceeeEEeecCCC------
Q 012165          321 IGDVAAFPLKMYDRTARVEHVDHARQSAQHCIKALLSAQT-HTYDYLPYFYSRVFEYEGSPRKVWWQFFGDNVG------  393 (469)
Q Consensus       321 ~GD~a~~~~~~~~~~~~~~~~~~A~~~a~~~a~~i~~~~~-~~~~~~p~~~~~~~~~~g~~~~~~~~~~G~~~~------  393 (469)
                      +|||+..+.          .+..|..+|+.+|.||++... ..+..+|++  ..+..       .+..+|....      
T Consensus       307 ~GD~~~~~~----------~~~~A~~~g~~aa~~i~~~~~~~~~~~~p~~--~~~~~-------~~a~vG~~~~~a~~~g  367 (467)
T 1zk7_A          307 AGDCTDQPQ----------FVYVAAAAGTRAAINMTGGDAALDLTAMPAV--VFTDP-------QVATVGYSEAEAHHDG  367 (467)
T ss_dssp             CSTTBSSCC----------CHHHHHHHHHHHHHHHTTCCCCCCCTTCEEE--ECSSS-------EEEEEECCHHHHHHTT
T ss_pred             EeccCCCcc----------cHHHHHHHHHHHHHHHcCCCcccCCCCCCEE--EecCC-------ceEEEecCHHHHHhcC
Confidence            999998653          355699999999999987532 234455643  22221       1555665422      


Q ss_pred             -cEEEE------------ccCCCcEEEEEEe--CCEEEEEEeecCChHH-hHHHHHHHhCCCCCCh--hhhcCCCcHHHH
Q 012165          394 -ETIEI------------GNFDPKIATFWID--SGKLKGVLVESGSPEE-FQLLPTLARSQPFVDK--AKLQQASSVEEA  455 (469)
Q Consensus       394 -~~~~~------------~~~~~~~~~~~~~--~~~l~g~~~~~~~~~~-~~~~~~~~~~~~~~~~--~~~~~~~~~~~~  455 (469)
                       +....            ......|.+++++  +++|+|+++++.++.+ +..+..+|+.+.+++.  .....+||+.|+
T Consensus       368 ~~~~~~~~~~~~~~~~~~~~~~~~~~kl~~~~~~~~ilG~~~~g~~a~~~i~~~~~~i~~~~~~~~l~~~~~~~pt~~e~  447 (467)
T 1zk7_A          368 IETDSRTLTLDNVPRALANFDTRGFIKLVIEEGSHRLIGVQAVAPEAGELIQTAALAIRNRMTVQELADQLFPYLTMVEG  447 (467)
T ss_dssp             CCEEEEEEEGGGCHHHHHTTCCCCEEEEEEETTTCBEEEEEEEETTHHHHHHHHHHHHHTTCBHHHHHTSCCCTTSTTHH
T ss_pred             CCeEEEEEecccchhhhhcCCCcEEEEEEEECCCCEEEEEEEECCCHHHHHHHHHHHHHCCCCHHHHhcCccCCCCHHHH
Confidence             11111            0112357888886  6999999987776655 4556778888887763  224678999999


Q ss_pred             HHHHHhcCC
Q 012165          456 LEIARAALP  464 (469)
Q Consensus       456 ~~~~~~~~~  464 (469)
                      ++.|+.++.
T Consensus       448 ~~~~~~~~~  456 (467)
T 1zk7_A          448 LKLAAQTFN  456 (467)
T ss_dssp             HHHHHHTTT
T ss_pred             HHHHHHHHh
Confidence            999988654

>1zmd_A Dihydrolipoyl dehydrogenase; lipoamide dehydrogenase, pyruvate dehydrogenase, alpha- ketoglutarate dehydrogenase; HET: FAD NAI; 2.08A {Homo sapiens} PDB: 1zmc_A* 2f5z_A* 1zy8_A* 3rnm_A*

Probab=100.00  E-value=7.3e-40  Score=334.58  Aligned_cols=383  Identities=18%  Similarity=0.251  Sum_probs=262.2

Q ss_pred             CCCcEEEEcCcHHHHHHHHHHHHcCCCCCcEEEEcCCCCCCCCCC---CC-cccccC----------------CC--CCC
Q 012165           50 ENREFVIVGGGNAAGYAARTFVEHGMADGRLCIVSKEAYAPYERP---AL-TKGYLF----------------PL--DKK  107 (469)
Q Consensus        50 ~~~~vvIIGgG~AGl~aA~~L~~~g~~~~~V~vie~~~~~~~~~~---~l-~~~~~~----------------~~--~~~  107 (469)
                      +++||+|||||+||+++|..|++.|+   +|+|||+++..+....   .. ++.++.                ..  ...
T Consensus         5 ~~~dvvIIGgG~aGl~aA~~l~~~g~---~V~liE~~~~~GG~~~~~g~~Psk~l~~~~~~~~~~~~~~~~~~g~~~~~~   81 (474)
T 1zmd_A            5 IDADVTVIGSGPGGYVAAIKAAQLGF---KTVCIEKNETLGGTCLNVGCIPSKALLNNSHYYHMAHGTDFASRGIEMSEV   81 (474)
T ss_dssp             EEEEEEEECCSHHHHHHHHHHHHTTC---CEEEEECSSSSSHHHHHHSHHHHHHHHHHHHHHHHHHSSHHHHTTEEESCE
T ss_pred             CCCCEEEECCCHHHHHHHHHHHhCCC---eEEEEeCCCCcCCcccccCccchHHHHHHHHHHHHhhhhhHhhCccccCCC
Confidence            45799999999999999999999987   7999999865421100   00 000000                00  000


Q ss_pred             CCCCCCCcccc---CCCCCCCCHhHHHHCCcEEEeCCcEEEEeCCCcEEEeCC-C-eEEEeccEEeccCCCCCcCCCCCC
Q 012165          108 PARLPGFHTCV---GSGGERQTPEWYKEKGIEMIYQDPVTSIDIEKQTLITNS-G-KLLKYGSLIVATGCTASRFPEKIG  182 (469)
Q Consensus       108 ~~~~~~~~~~~---~~~~~~~~~~~~~~~~i~~~~~~~v~~id~~~~~v~~~~-g-~~~~yd~lVlAtG~~~~~~~~~~g  182 (469)
                      ..+++.+....   .........+++++.+++++.+ ++..++.....|.+.+ + +++.||+||+|||++|.. |+++|
T Consensus        82 ~~~~~~~~~~~~~~~~~l~~~~~~~~~~~gv~~~~g-~~~~~~~~~~~v~~~~gg~~~~~~d~lViAtGs~p~~-p~i~g  159 (474)
T 1zmd_A           82 RLNLDKMMEQKSTAVKALTGGIAHLFKQNKVVHVNG-YGKITGKNQVTATKADGGTQVIDTKNILIATGSEVTP-FPGIT  159 (474)
T ss_dssp             EECHHHHHHHHHHHHHHHHHHHHHHHHHTTCEEEES-EEEEEETTEEEEECTTSCEEEEEEEEEEECCCEEECC-CTTCC
T ss_pred             ccCHHHHHHHHHHHHHHHHHHHHHHHHhCCCEEEEE-EEEEecCCEEEEEecCCCcEEEEeCEEEECCCCCCCC-CCCCC
Confidence            00000000000   0000000134567789999997 5556776656677766 4 579999999999999874 55566


Q ss_pred             CCcCcEEEecCHHHHHHHHHhhhcCCeEEEEcCChHHHHHHHHHHhCCCeEe-------------------eeHHHHHHc
Q 012165          183 GYLPGVHYIRDVADADALISSLEKAKKVVVVGGGYIGMEVAAAAVGWKLDTT-------------------RYEQLYQQN  243 (469)
Q Consensus       183 ~~~~~v~~~~~~~~~~~~~~~~~~~~~vvVvG~G~~g~e~A~~l~~~g~~v~-------------------~~~~~l~~~  243 (469)
                      .+..++++   ..+   +......+++++|||+|++|+|+|..|.++|.+|+                   .+.+.+++.
T Consensus       160 ~~~~~v~t---~~~---~~~~~~~~~~vvViGgG~~g~E~A~~l~~~g~~Vtlv~~~~~~l~~~~~~~~~~~l~~~l~~~  233 (474)
T 1zmd_A          160 IDEDTIVS---STG---ALSLKKVPEKMVVIGAGVIGVELGSVWQRLGADVTAVEFLGHVGGVGIDMEISKNFQRILQKQ  233 (474)
T ss_dssp             CCSSSEEC---HHH---HTTCSSCCSEEEEECCSHHHHHHHHHHHHTTCEEEEECSSSSSSCSSCCHHHHHHHHHHHHHT
T ss_pred             CCcCcEEc---HHH---HhhccccCceEEEECCCHHHHHHHHHHHHcCCEEEEEeccCccCCcccCHHHHHHHHHHHHHC
Confidence            44334432   222   22222357999999999999999999999999987                   345678899


Q ss_pred             CcEEEcCCeEEEEEeCCCCcEEEEE-----cCCCCEEeCCEEEEccCCccCCch--hhhcCCccc-CCCEEeCCCCCCCC
Q 012165          244 GVKFVKGASIKNLEAGSDGRVAAVK-----LEDGSTIDADTIVIGIGAKPTVSP--FERVGLNSS-VGGIQVDGQFRTRM  315 (469)
Q Consensus       244 gV~~~~~~~v~~i~~~~~~~v~~v~-----~~~g~~i~~D~vi~a~G~~p~~~~--~~~~gl~~~-~g~i~Vd~~~~t~~  315 (469)
                      ||+++++++|++++.++++.+ .+.     ..+++++++|.||+|+|++|++++  ++++|++.+ +|+|.||+++||+.
T Consensus       234 Gv~i~~~~~v~~i~~~~~~~~-~v~~~~~~~~~~~~i~~D~vv~a~G~~p~~~~l~l~~~g~~~~~~G~i~vd~~~~t~~  312 (474)
T 1zmd_A          234 GFKFKLNTKVTGATKKSDGKI-DVSIEAASGGKAEVITCDVLLVCIGRRPFTKNLGLEELGIELDPRGRIPVNTRFQTKI  312 (474)
T ss_dssp             TCEEECSEEEEEEEECTTSCE-EEEEEETTSCCCEEEEESEEEECSCEEECCTTSSHHHHTCCCCTTSCCCCCTTCBCSS
T ss_pred             CCEEEeCceEEEEEEcCCceE-EEEEEecCCCCceEEEcCEEEECcCCCcCCCcCCchhcCCccCCCCCEEECcCCccCC
Confidence            999999999999986544323 344     356678999999999999999987  788888876 57799999999999


Q ss_pred             CceEEeccccccCCccCCcccccchHHHHHHHHHHHHHHHhcCCC-CCCCCCCceeeecccccCCCcceeeEEeecCCC-
Q 012165          316 PGIFAIGDVAAFPLKMYDRTARVEHVDHARQSAQHCIKALLSAQT-HTYDYLPYFYSRVFEYEGSPRKVWWQFFGDNVG-  393 (469)
Q Consensus       316 ~~Vfa~GD~a~~~~~~~~~~~~~~~~~~A~~~a~~~a~~i~~~~~-~~~~~~p~~~~~~~~~~g~~~~~~~~~~G~~~~-  393 (469)
                      |+|||+|||+..+.          .+..|..||+.+|.||++... ..|..+|++|   |..+      .+..+|.... 
T Consensus       313 ~~IyA~GD~~~~~~----------~~~~A~~~g~~aa~~i~~~~~~~~~~~~p~~~---~~~~------~~a~vG~~e~~  373 (474)
T 1zmd_A          313 PNIYAIGDVVAGPM----------LAHKAEDEGIICVEGMAGGAVHIDYNCVPSVI---YTHP------EVAWVGKSEEQ  373 (474)
T ss_dssp             TTEEECGGGSSSCC----------CHHHHHHHHHHHHHHHTTCCCCCCGGGCCEEE---CSSS------EEEEEECCHHH
T ss_pred             CCEEEeeecCCCCc----------cHHHHHHHHHHHHHHhcCCCCcCCCCCCCEEE---ECCC------CeEEEeCCHHH
Confidence            99999999997542          345699999999999997432 2345577643   2211      1555665432 


Q ss_pred             ------cEEEEc------------cCCCcEEEEEEe--CCEEEEEEeecCChHH-hHHHHHHHhCCCCCCh--hhhcCCC
Q 012165          394 ------ETIEIG------------NFDPKIATFWID--SGKLKGVLVESGSPEE-FQLLPTLARSQPFVDK--AKLQQAS  450 (469)
Q Consensus       394 ------~~~~~~------------~~~~~~~~~~~~--~~~l~g~~~~~~~~~~-~~~~~~~~~~~~~~~~--~~~~~~~  450 (469)
                            +.....            .....|.|++++  +++|+|+++++..+.+ +..+..+|+.+.+++.  ..+..||
T Consensus       374 a~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~k~~~~~~~~~ilG~~~~g~~a~~~i~~~~~ai~~~~~~~~l~~~~~~~P  453 (474)
T 1zmd_A          374 LKEEGIEYKVGKFPFAANSRAKTNADTDGMVKILGQKSTDRVLGAHILGPGAGEMVNEAALALEYGASCEDIARVCHAHP  453 (474)
T ss_dssp             HHHHTCCEEEEEEEGGGCHHHHHTTCCCCEEEEEEETTTCBEEEEEEEETTHHHHHHHHHHHHHHTCBHHHHHHSCCCTT
T ss_pred             HHhcCCCEEEEEEecccchhhhhcCCCcEEEEEEEECCCCEEEEEEEECCCHHHHHHHHHHHHHCCCCHHHHhhCcCCCC
Confidence                  111100            112358888887  6999999987776644 5566777888887762  3357789


Q ss_pred             cHHHHHHHHHhcC
Q 012165          451 SVEEALEIARAAL  463 (469)
Q Consensus       451 ~~~~~~~~~~~~~  463 (469)
                      ++.|++..|+.++
T Consensus       454 t~~e~~~~~~~~~  466 (474)
T 1zmd_A          454 TLSEAFREANLAA  466 (474)
T ss_dssp             CTHHHHHHHHHHH
T ss_pred             CHHHHHHHHHHHH
Confidence            9999999998754

>2a8x_A Dihydrolipoyl dehydrogenase, E3 component of alpha; lipoamide dehydrogenase, pyruvate dehydrogenase, alpha keto acid dehydrogenase; HET: FAD; 2.40A {Mycobacterium tuberculosis} PDB: 3ii4_A*

Probab=100.00  E-value=3.7e-41  Score=343.23  Aligned_cols=382  Identities=20%  Similarity=0.230  Sum_probs=257.9

Q ss_pred             CCcEEEEcCcHHHHHHHHHHHHcCCCCCcEEEEcCCCCCCCC---CCCC-ccccc------------CCCCCC----CCC
Q 012165           51 NREFVIVGGGNAAGYAARTFVEHGMADGRLCIVSKEAYAPYE---RPAL-TKGYL------------FPLDKK----PAR  110 (469)
Q Consensus        51 ~~~vvIIGgG~AGl~aA~~L~~~g~~~~~V~vie~~~~~~~~---~~~l-~~~~~------------~~~~~~----~~~  110 (469)
                      ++||+|||||+||+++|..|++.|+   +|+|||++. .+..   .... ++.++            ......    ..+
T Consensus         3 ~~dvvIIGaG~aGl~aA~~l~~~G~---~V~liE~~~-~gG~~~~~g~~psk~ll~~~~~~~~~~~~~~~~g~~~~~~~~   78 (464)
T 2a8x_A            3 HYDVVVLGAGPGGYVAAIRAAQLGL---STAIVEPKY-WGGVCLNVGCIPSKALLRNAELVHIFTKDAKAFGISGEVTFD   78 (464)
T ss_dssp             EEEEEEECCSHHHHHHHHHHHHTTC---CEEEECSSC-TTHHHHHHSHHHHHHHHHHHHHHHHHHHHTTTTTEEECCEEC
T ss_pred             cCCEEEECCCHHHHHHHHHHHhCCC---eEEEEeCCC-CCCcccccCchhhHHHHHHHHHHHHHHHHHHhcCCCCCCccC
Confidence            4799999999999999999999987   799999973 2100   0000 00000            000000    000


Q ss_pred             CCCCcccc---CCCCCCCCHhHHHHCCcEEEeCCcEEEEeCCCcEEEeCCC--eEEEeccEEeccCCCCCcCCCCCCCCc
Q 012165          111 LPGFHTCV---GSGGERQTPEWYKEKGIEMIYQDPVTSIDIEKQTLITNSG--KLLKYGSLIVATGCTASRFPEKIGGYL  185 (469)
Q Consensus       111 ~~~~~~~~---~~~~~~~~~~~~~~~~i~~~~~~~v~~id~~~~~v~~~~g--~~~~yd~lVlAtG~~~~~~~~~~g~~~  185 (469)
                      +..+....   .........+++++.+++++.++.+. ++.+..+|.+.+|  +++.||+||+|||++|+. |++++.+.
T Consensus        79 ~~~~~~~~~~~~~~l~~~l~~~~~~~gv~~~~g~~~~-id~~~v~V~~~~G~~~~~~~d~lViAtG~~~~~-~~~~g~~~  156 (464)
T 2a8x_A           79 YGIAYDRSRKVAEGRVAGVHFLMKKNKITEIHGYGTF-ADANTLLVDLNDGGTESVTFDNAIIATGSSTRL-VPGTSLSA  156 (464)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHTTCEEECEEEEE-SSSSEEEEEETTSCCEEEEEEEEEECCCEEECC-CTTCCCBT
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHhCCCEEEEeEEEE-ecCCeEEEEeCCCceEEEEcCEEEECCCCCCCC-CCCCCCCc
Confidence            00000000   00000001345667899999875443 5554456667777  689999999999999864 44455322


Q ss_pred             CcEEEecCHHHHHHHHHhhhcCCeEEEEcCChHHHHHHHHHHhCCCeEe------------------eeHHHHHHcCcEE
Q 012165          186 PGVHYIRDVADADALISSLEKAKKVVVVGGGYIGMEVAAAAVGWKLDTT------------------RYEQLYQQNGVKF  247 (469)
Q Consensus       186 ~~v~~~~~~~~~~~~~~~~~~~~~vvVvG~G~~g~e~A~~l~~~g~~v~------------------~~~~~l~~~gV~~  247 (469)
                      . +   .+..+   .......+++++|||+|++|+|+|..|.++|.+|+                  .+.+.+++.||++
T Consensus       157 ~-~---~~~~~---~~~~~~~~~~vvViGgG~~g~E~A~~l~~~g~~Vtlv~~~~~~l~~~~~~~~~~l~~~l~~~gv~i  229 (464)
T 2a8x_A          157 N-V---VTYEE---QILSRELPKSIIIAGAGAIGMEFGYVLKNYGVDVTIVEFLPRALPNEDADVSKEIEKQFKKLGVTI  229 (464)
T ss_dssp             T-E---ECHHH---HHTCSSCCSEEEEECCSHHHHHHHHHHHHTTCEEEEECSSSSSSTTSCHHHHHHHHHHHHHHTCEE
T ss_pred             e-E---EecHH---HhhccccCCeEEEECCcHHHHHHHHHHHHcCCeEEEEEcCCccccccCHHHHHHHHHHHHHcCCEE
Confidence            2 2   23333   22223357999999999999999999999999988                  3567788999999


Q ss_pred             EcCCeEEEEEeCCCCcEEEEEcC-CC--CEEeCCEEEEccCCccCCch--hhhcCCccc-CCCEEeCCCCCCCCCceEEe
Q 012165          248 VKGASIKNLEAGSDGRVAAVKLE-DG--STIDADTIVIGIGAKPTVSP--FERVGLNSS-VGGIQVDGQFRTRMPGIFAI  321 (469)
Q Consensus       248 ~~~~~v~~i~~~~~~~v~~v~~~-~g--~~i~~D~vi~a~G~~p~~~~--~~~~gl~~~-~g~i~Vd~~~~t~~~~Vfa~  321 (469)
                      ++++.+++++.+++ .+ .+.++ +|  +++++|.||+|+|++||+++  ++++|+..+ +|+|.||+++||+.|+|||+
T Consensus       230 ~~~~~v~~i~~~~~-~~-~v~~~~~g~~~~~~~D~vv~a~G~~p~~~~l~~~~~gl~~~~~G~i~vd~~~~t~~~~IyA~  307 (464)
T 2a8x_A          230 LTATKVESIADGGS-QV-TVTVTKDGVAQELKAEKVLQAIGFAPNVEGYGLDKAGVALTDRKAIGVDDYMRTNVGHIYAI  307 (464)
T ss_dssp             ECSCEEEEEEECSS-CE-EEEEESSSCEEEEEESEEEECSCEEECCSSSCHHHHTCCBCTTSSBCCCTTSBCSSTTEEEC
T ss_pred             EeCcEEEEEEEcCC-eE-EEEEEcCCceEEEEcCEEEECCCCCccCCCCCchhcCCccCCCCCEeECcCCccCCCCEEEe
Confidence            99999999986433 33 45554 66  67999999999999999987  788898876 57799999999999999999


Q ss_pred             ccccccCCccCCcccccchHHHHHHHHHHHHHHHhcCCCCC---CCCCCceeeecccccCCCcceeeEEeecCCC-----
Q 012165          322 GDVAAFPLKMYDRTARVEHVDHARQSAQHCIKALLSAQTHT---YDYLPYFYSRVFEYEGSPRKVWWQFFGDNVG-----  393 (469)
Q Consensus       322 GD~a~~~~~~~~~~~~~~~~~~A~~~a~~~a~~i~~~~~~~---~~~~p~~~~~~~~~~g~~~~~~~~~~G~~~~-----  393 (469)
                      |||+..+.          .+..|..||+.+|+||++....+   |..+|++  ..++.+       +..+|....     
T Consensus       308 GD~~~~~~----------~~~~A~~~g~~aa~~i~g~~~~~~~~~~~~p~~--~~~~~~-------~a~vG~~e~~a~~~  368 (464)
T 2a8x_A          308 GDVNGLLQ----------LAHVAEAQGVVAAETIAGAETLTLGDHRMLPRA--TFCQPN-------VASFGLTEQQARNE  368 (464)
T ss_dssp             GGGGCSSC----------SHHHHHHHHHHHHHHHHTCCCCCCCCGGGSCEE--ECSSSE-------EEEEECCHHHHHHT
T ss_pred             ECcCCCcc----------CHHHHHHHHHHHHHHhcCCCCcccCCCCCCCEE--EECCCC-------eEEEcCCHHHHHhc
Confidence            99997542          34569999999999999733333   4556653  222211       455564321     


Q ss_pred             --cEEEEc------------cCCCcEEEEEEe--CCEEEEEEeecCChHH-hHHHHHHHhCCCCCCh--hhhcCCCcHHH
Q 012165          394 --ETIEIG------------NFDPKIATFWID--SGKLKGVLVESGSPEE-FQLLPTLARSQPFVDK--AKLQQASSVEE  454 (469)
Q Consensus       394 --~~~~~~------------~~~~~~~~~~~~--~~~l~g~~~~~~~~~~-~~~~~~~~~~~~~~~~--~~~~~~~~~~~  454 (469)
                        +.....            .....|.|++++  +++|+|+++++..+.+ +..+..+|+.+.+++.  ..+..||++.|
T Consensus       369 g~~~~~~~~~~~~~~~~~~~~~~~~~~k~~~~~~~~~ilG~~~~g~~a~e~i~~~~~ai~~~~~~~~l~~~~~~~Pt~~e  448 (464)
T 2a8x_A          369 GYDVVVAKFPFTANAKAHGVGDPSGFVKLVADAKHGELLGGHLVGHDVAELLPELTLAQRWDLTASELARNVHTHPTMSE  448 (464)
T ss_dssp             TCCEEEEEEEGGGCHHHHHHTCCCCEEEEEEETTTTEEEEEEEEETTGGGGHHHHHHHHHTTCBHHHHTTSCCCTTCTTH
T ss_pred             CCCEEEEEEEcchhhhhhhcCCCcEEEEEEEECCCCEEEEEEEECcCHHHHHHHHHHHHHCCCCHHHHhhCccCCCChHH
Confidence              111100            112358888886  6999999987777654 5556667888887762  23477899999


Q ss_pred             HHHHHHhcCCcc
Q 012165          455 ALEIARAALPVE  466 (469)
Q Consensus       455 ~~~~~~~~~~~~  466 (469)
                      +++.|++++..+
T Consensus       449 ~~~~~~~~~~~~  460 (464)
T 2a8x_A          449 ALQECFHGLVGH  460 (464)
T ss_dssp             HHHHHHHHHHSC
T ss_pred             HHHHHHHHHhcc
Confidence            999998765443

>1dxl_A Dihydrolipoamide dehydrogenase; oxidoreductase, multienzyme complex protein, pyruvate dehydrogenase complex, glycine decarboxylase complex; HET: FAD; 3.15A {Pisum sativum} SCOP: c.3.1.5 c.3.1.5 d.87.1.1

Probab=100.00  E-value=4.9e-41  Score=343.06  Aligned_cols=385  Identities=20%  Similarity=0.294  Sum_probs=261.5

Q ss_pred             CCCCcEEEEcCcHHHHHHHHHHHHcCCCCCcEEEEcCCCCCCCCCC---CC-cccccC---------------CC--CCC
Q 012165           49 NENREFVIVGGGNAAGYAARTFVEHGMADGRLCIVSKEAYAPYERP---AL-TKGYLF---------------PL--DKK  107 (469)
Q Consensus        49 ~~~~~vvIIGgG~AGl~aA~~L~~~g~~~~~V~vie~~~~~~~~~~---~l-~~~~~~---------------~~--~~~  107 (469)
                      +.++||+|||||+||+++|..|++.|+   +|+|||+++.++....   .. ++.++.               ..  ...
T Consensus         4 ~~~~dvvIIGaG~aGl~aA~~l~~~g~---~V~liE~~~~~GG~~~~~g~~p~k~l~~~~~~~~~~~~~~~~~g~~~~~~   80 (470)
T 1dxl_A            4 SDENDVVIIGGGPGGYVAAIKAAQLGF---KTTCIEKRGALGGTCLNVGCIPSKALLHSSHMYHEAKHSFANHGVKVSNV   80 (470)
T ss_dssp             CCCCCEEEECCSHHHHHHHHHHHHHTC---CEEEEECSSSSCCSHHHHSHHHHHHHHHHHHHHHHHHHTHHHHTEEESCE
T ss_pred             CccCCEEEECCCHHHHHHHHHHHHCCC---eEEEEeCCCCccccccCcCccchHHHHHHHHHHHHHHHHHHhcCcccCCC
Confidence            346899999999999999999999987   7999999865432100   00 000000               00  000


Q ss_pred             CCCCCCCcccc---CCCCCCCCHhHHHHCCcEEEeCCcEEEEeCCCcEEEeCCC--eEEEeccEEeccCCCCCcCCCCCC
Q 012165          108 PARLPGFHTCV---GSGGERQTPEWYKEKGIEMIYQDPVTSIDIEKQTLITNSG--KLLKYGSLIVATGCTASRFPEKIG  182 (469)
Q Consensus       108 ~~~~~~~~~~~---~~~~~~~~~~~~~~~~i~~~~~~~v~~id~~~~~v~~~~g--~~~~yd~lVlAtG~~~~~~~~~~g  182 (469)
                      ..++..+....   .........+++++.+++++.++.+ .++.....|.+.+|  .++.||+||+|||++|.. |+++|
T Consensus        81 ~~~~~~~~~~~~~~~~~l~~~~~~~~~~~gv~~~~g~~~-~~~~~~~~v~~~~G~~~~i~~d~lIiAtGs~p~~-p~~~g  158 (470)
T 1dxl_A           81 EIDLAAMMGQKDKAVSNLTRGIEGLFKKNKVTYVKGYGK-FVSPSEISVDTIEGENTVVKGKHIIIATGSDVKS-LPGVT  158 (470)
T ss_dssp             EECHHHHHHHHHHHHHHHHHHHHHHHHHHTCEEEESCEE-EEETTEEEECCSSSCCEEEECSEEEECCCEEECC-BTTBC
T ss_pred             ccCHHHHHHHHHHHHHHHHHHHHHHHHhCCCEEEEeEEE-EecCCEEEEEeCCCceEEEEcCEEEECCCCCCCC-CCCCC
Confidence            00000000000   0000000123556779999998654 47765556666677  679999999999999874 44556


Q ss_pred             CCcCcEEEecCHHHHHHHHHhhhcCCeEEEEcCChHHHHHHHHHHhCCCeEe------------------eeHHHHHHcC
Q 012165          183 GYLPGVHYIRDVADADALISSLEKAKKVVVVGGGYIGMEVAAAAVGWKLDTT------------------RYEQLYQQNG  244 (469)
Q Consensus       183 ~~~~~v~~~~~~~~~~~~~~~~~~~~~vvVvG~G~~g~e~A~~l~~~g~~v~------------------~~~~~l~~~g  244 (469)
                      .+.+++.+   ..   .+......+++++|||+|++|+|+|..|.++|.+|+                  .+.+.+++.|
T Consensus       159 ~~~~~v~~---~~---~~~~~~~~~~~vvViGgG~~g~e~A~~l~~~g~~Vtli~~~~~~l~~~~~~~~~~l~~~l~~~g  232 (470)
T 1dxl_A          159 IDEKKIVS---ST---GALALSEIPKKLVVIGAGYIGLEMGSVWGRIGSEVTVVEFASEIVPTMDAEIRKQFQRSLEKQG  232 (470)
T ss_dssp             CCSSSEEC---HH---HHTTCSSCCSEEEESCCSHHHHHHHHHHHHHTCEEEEECSSSSSSTTSCHHHHHHHHHHHHHSS
T ss_pred             CCcccEEe---HH---HhhhhhhcCCeEEEECCCHHHHHHHHHHHHcCCcEEEEEcCCcccccccHHHHHHHHHHHHHcC
Confidence            44344432   22   222222357999999999999999999999999987                  3567788999


Q ss_pred             cEEEcCCeEEEEEeCCCCcEEEEEcC---CC--CEEeCCEEEEccCCccCCch--hhhcCCccc-CCCEEeCCCCCCCCC
Q 012165          245 VKFVKGASIKNLEAGSDGRVAAVKLE---DG--STIDADTIVIGIGAKPTVSP--FERVGLNSS-VGGIQVDGQFRTRMP  316 (469)
Q Consensus       245 V~~~~~~~v~~i~~~~~~~v~~v~~~---~g--~~i~~D~vi~a~G~~p~~~~--~~~~gl~~~-~g~i~Vd~~~~t~~~  316 (469)
                      |++++++.+.+++.++++ + .+.++   +|  +++++|.||+|+|++||+++  ++++|++.+ +|+|.||+++||+.|
T Consensus       233 v~i~~~~~v~~i~~~~~~-~-~v~~~~~~~g~~~~~~~D~vv~a~G~~p~~~~l~~~~~gl~~~~~G~i~vd~~~~t~~~  310 (470)
T 1dxl_A          233 MKFKLKTKVVGVDTSGDG-V-KLTVEPSAGGEQTIIEADVVLVSAGRTPFTSGLNLDKIGVETDKLGRILVNERFSTNVS  310 (470)
T ss_dssp             CCEECSEEEEEEECSSSS-E-EEEEEESSSCCCEEEEESEEECCCCEEECCTTSCCTTTTCCBCSSSCBCCCTTCBCSST
T ss_pred             CEEEeCCEEEEEEEcCCe-E-EEEEEecCCCcceEEECCEEEECCCCCcCCCCCCchhcCCccCCCCCEeECcCCccCCC
Confidence            999999999999854333 3 35543   44  68999999999999999988  788898876 577999999999999


Q ss_pred             ceEEeccccccCCccCCcccccchHHHHHHHHHHHHHHHhcCCCCC--CCCCCceeeecccccCCCcceeeEEeecCCC-
Q 012165          317 GIFAIGDVAAFPLKMYDRTARVEHVDHARQSAQHCIKALLSAQTHT--YDYLPYFYSRVFEYEGSPRKVWWQFFGDNVG-  393 (469)
Q Consensus       317 ~Vfa~GD~a~~~~~~~~~~~~~~~~~~A~~~a~~~a~~i~~~~~~~--~~~~p~~~~~~~~~~g~~~~~~~~~~G~~~~-  393 (469)
                      +|||+|||+..+.          .+..|..+|+.+|.+|++. ..+  |..+|+  ...++.+       +..+|.... 
T Consensus       311 ~Iya~GD~~~~~~----------~~~~A~~~g~~aa~~i~g~-~~~~~~~~~p~--~~~~~~~-------~a~vG~~e~~  370 (470)
T 1dxl_A          311 GVYAIGDVIPGPM----------LAHKAEEDGVACVEYLAGK-VGHVDYDKVPG--VVYTNPE-------VASVGKTEEQ  370 (470)
T ss_dssp             TEEECSTTSSSCC----------CHHHHHHHHHHHHHHHTTS-CCCCCTTSCCE--EECSSSE-------EEEEECCHHH
T ss_pred             CEEEEeccCCCCc----------cHHHHHHHHHHHHHHHcCC-CcCCCCCCCCE--EEECCCc-------eEEEcCCHHH
Confidence            9999999997542          3456999999999999964 333  444554  3322221       455664321 


Q ss_pred             ------cEEEEc------------cCCCcEEEEEEe--CCEEEEEEeecCChHH-hHHHHHHHhCCCCCCh--hhhcCCC
Q 012165          394 ------ETIEIG------------NFDPKIATFWID--SGKLKGVLVESGSPEE-FQLLPTLARSQPFVDK--AKLQQAS  450 (469)
Q Consensus       394 ------~~~~~~------------~~~~~~~~~~~~--~~~l~g~~~~~~~~~~-~~~~~~~~~~~~~~~~--~~~~~~~  450 (469)
                            +.....            .....|.|++++  +++|+|+++++..+.+ +..+..+|+.+.+++.  ..+..||
T Consensus       371 a~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~k~~~~~~~~~ilG~~~~g~~a~~~i~~~~~ai~~~~~~~~l~~~~~~~P  450 (470)
T 1dxl_A          371 VKETGVEYRVGKFPFMANSRAKAIDNAEGLVKIIAEKETDKILGVHIMAPNAGELIHEAAIALQYDASSEDIARVCHAHP  450 (470)
T ss_dssp             HHHTTCCEEEEEEEGGGCHHHHHHSCCCCEEEEEEETTTCBEEEEEEEETTHHHHHHHHHHHHHTTCBHHHHHTSCCCSS
T ss_pred             HHhcCCcEEEEEEecccchHHHhcCCCcEEEEEEEECCCCEEEEEEEECCCHHHHHHHHHHHHHCCCCHHHHhhcccCCC
Confidence                  111100            112358888886  6999999997777655 5556667888887763  2347789


Q ss_pred             cHHHHHHHHHhcCCcc
Q 012165          451 SVEEALEIARAALPVE  466 (469)
Q Consensus       451 ~~~~~~~~~~~~~~~~  466 (469)
                      ++.|+++.|++++..+
T Consensus       451 t~~e~~~~~~~~~~~~  466 (470)
T 1dxl_A          451 TMSEAIKEAAMATYDK  466 (470)
T ss_dssp             CTTHHHHHHHHHHHSC
T ss_pred             ChHHHHHHHHHHHhcC
Confidence            9999999998765543

>1ojt_A Surface protein; redox-active center, glycolysis, oxidoreductase, NAD, flavop FAD, P64K; HET: FAD; 2.75A {Neisseria meningitidis} SCOP: c.3.1.5 c.3.1.5 d.87.1.1 PDB: 1bhy_A*

Probab=100.00  E-value=1.8e-40  Score=339.58  Aligned_cols=382  Identities=17%  Similarity=0.229  Sum_probs=255.9

Q ss_pred             CCCcEEEEcCcHHHHHHHHHHHHcCCCCCcEEEEcCCCCCCCC---CCCC-ccccc------------C----CCCCCCC
Q 012165           50 ENREFVIVGGGNAAGYAARTFVEHGMADGRLCIVSKEAYAPYE---RPAL-TKGYL------------F----PLDKKPA  109 (469)
Q Consensus        50 ~~~~vvIIGgG~AGl~aA~~L~~~g~~~~~V~vie~~~~~~~~---~~~l-~~~~~------------~----~~~~~~~  109 (469)
                      .++||+|||||+||+++|..|++.|.   +|+|||+++..+..   .... ++.++            .    .......
T Consensus         5 ~~~dVvIIGaG~aGl~aA~~l~~~G~---~V~liE~~~~~GG~~~~~g~~psk~ll~~~~~~~~~~~~~~~gi~~~~~~~   81 (482)
T 1ojt_A            5 AEYDVVVLGGGPGGYSAAFAAADEGL---KVAIVERYKTLGGVCLNVGCIPSKALLHNAAVIDEVRHLAANGIKYPEPEL   81 (482)
T ss_dssp             EEEEEEEECCSHHHHHHHHHHHHTTC---CEEEEESSSCSSHHHHHHSHHHHHHHHHHHHHHHHHHHGGGGTCCCCCCCC
T ss_pred             CcCCEEEECCCHHHHHHHHHHHhCCC---eEEEEeCCCCCCCceeeecccchHHHHHHHHHHHHHHHHHhCCcccCCCcc
Confidence            35799999999999999999999987   79999997654210   0000 00000            0    0000000


Q ss_pred             CCCCCcccc---CCCCCCCCHhHHHHCCcEEEeCCcEEEEeCCCcEEEeCCC------------eEEEeccEEeccCCCC
Q 012165          110 RLPGFHTCV---GSGGERQTPEWYKEKGIEMIYQDPVTSIDIEKQTLITNSG------------KLLKYGSLIVATGCTA  174 (469)
Q Consensus       110 ~~~~~~~~~---~~~~~~~~~~~~~~~~i~~~~~~~v~~id~~~~~v~~~~g------------~~~~yd~lVlAtG~~~  174 (469)
                      ++..+....   ..........++++.+++++.++.+. ++.....|.+.+|            .++.||+||+|||++|
T Consensus        82 ~~~~~~~~~~~~~~~l~~~~~~~~~~~gv~~~~g~~~~-~~~~~v~v~~~~g~~~~~~~~~g~~~~i~ad~lViAtGs~p  160 (482)
T 1ojt_A           82 DIDMLRAYKDGVVSRLTGGLAGMAKSRKVDVIQGDGQF-LDPHHLEVSLTAGDAYEQAAPTGEKKIVAFKNCIIAAGSRV  160 (482)
T ss_dssp             CHHHHHHHHHHHHHHHHHHHHHHHHHTTCEEEEEEEEE-EETTEEEEEEEEEEETTEEEEEEEEEEEEEEEEEECCCEEE
T ss_pred             CHHHHHHHHHHHHHHHHHHHHHHHHhCCcEEEeeEEEE-ccCCEEEEEecCCcccccccccCcceEEEcCEEEECCCCCC
Confidence            000000000   00000001234567899999875443 5543334444455            5799999999999998


Q ss_pred             CcCCCCCCCCcCcEEEecCHHHHHHHHHhhhcCCeEEEEcCChHHHHHHHHHHhCCCeEe------------------ee
Q 012165          175 SRFPEKIGGYLPGVHYIRDVADADALISSLEKAKKVVVVGGGYIGMEVAAAAVGWKLDTT------------------RY  236 (469)
Q Consensus       175 ~~~~~~~g~~~~~v~~~~~~~~~~~~~~~~~~~~~vvVvG~G~~g~e~A~~l~~~g~~v~------------------~~  236 (469)
                      ..+|.++. + ..+.   +..+   +......+++++|||+|++|+|+|..|.++|.+|+                  .+
T Consensus       161 ~~~~~i~~-~-~~v~---~~~~---~~~~~~~~~~vvViGgG~ig~E~A~~l~~~G~~Vtlv~~~~~~l~~~~~~~~~~l  232 (482)
T 1ojt_A          161 TKLPFIPE-D-PRII---DSSG---ALALKEVPGKLLIIGGGIIGLEMGTVYSTLGSRLDVVEMMDGLMQGADRDLVKVW  232 (482)
T ss_dssp             CCCSSCCC-C-TTEE---CHHH---HTTCCCCCSEEEEESCSHHHHHHHHHHHHHTCEEEEECSSSSSSTTSCHHHHHHH
T ss_pred             CCCCCCCc-c-CcEE---cHHH---HhcccccCCeEEEECCCHHHHHHHHHHHHcCCeEEEEEECCccccccCHHHHHHH
Confidence            75442432 1 2332   3233   22223357999999999999999999999999988                  44


Q ss_pred             HHHHHHcCcEEEcCCeEEEEEeCCCCcEEEEEcCC----CCEEeCCEEEEccCCccCCch--hhhcCCccc-CCCEEeCC
Q 012165          237 EQLYQQNGVKFVKGASIKNLEAGSDGRVAAVKLED----GSTIDADTIVIGIGAKPTVSP--FERVGLNSS-VGGIQVDG  309 (469)
Q Consensus       237 ~~~l~~~gV~~~~~~~v~~i~~~~~~~v~~v~~~~----g~~i~~D~vi~a~G~~p~~~~--~~~~gl~~~-~g~i~Vd~  309 (469)
                      .+.+++.||++++++.+++++.+++ . ..+.+.+    |+++++|.||+|+|++||+++  ++++|++.+ +|+|.||+
T Consensus       233 ~~~l~~~gV~i~~~~~v~~i~~~~~-~-~~v~~~~~~~~g~~~~~D~vv~a~G~~p~~~~l~~~~~gl~~~~~G~i~vd~  310 (482)
T 1ojt_A          233 QKQNEYRFDNIMVNTKTVAVEPKED-G-VYVTFEGANAPKEPQRYDAVLVAAGRAPNGKLISAEKAGVAVTDRGFIEVDK  310 (482)
T ss_dssp             HHHHGGGEEEEECSCEEEEEEEETT-E-EEEEEESSSCCSSCEEESCEEECCCEEECGGGTTGGGTTCCCCTTSCCCCCT
T ss_pred             HHHHHhcCCEEEECCEEEEEEEcCC-e-EEEEEeccCCCceEEEcCEEEECcCCCcCCCCCChhhcCceeCCCCCEeeCC
Confidence            6778899999999999999986432 2 3566766    778999999999999999987  688899876 47799999


Q ss_pred             CCCCCCCceEEeccccccCCccCCcccccchHHHHHHHHHHHHHHHhcCCCCC--CCCCCceeeecccccCCCcceeeEE
Q 012165          310 QFRTRMPGIFAIGDVAAFPLKMYDRTARVEHVDHARQSAQHCIKALLSAQTHT--YDYLPYFYSRVFEYEGSPRKVWWQF  387 (469)
Q Consensus       310 ~~~t~~~~Vfa~GD~a~~~~~~~~~~~~~~~~~~A~~~a~~~a~~i~~~~~~~--~~~~p~~~~~~~~~~g~~~~~~~~~  387 (469)
                      ++||+.|+|||+|||+..+.          .+..|..||+.+|.||++.. .+  +..+|++  ..+..+       +..
T Consensus       311 ~~~t~~~~IyA~GD~~~~~~----------l~~~A~~~g~~aa~~i~g~~-~~~~~~~~p~~--~~~~~~-------~a~  370 (482)
T 1ojt_A          311 QMRTNVPHIYAIGDIVGQPM----------LAHKAVHEGHVAAENCAGHK-AYFDARVIPGV--AYTSPE-------VAW  370 (482)
T ss_dssp             TSBCSSTTEEECGGGTCSSC----------CHHHHHHHHHHHHHHHTTCC-CCCCCCCCCEE--ECSSSC-------EEE
T ss_pred             CcccCCCCEEEEEcccCCCc----------cHHHHHHHHHHHHHHHcCCC-ccCCCCCCCEE--EEcCCC-------eEE
Confidence            99999999999999998542          34569999999999999743 33  4445642  222221       455


Q ss_pred             eecCCC-------cEEEEc------------cCCCcEEEEEE--eCCEEEEEEeecCChHH-hHHHHHHHhCCCCCCh--
Q 012165          388 FGDNVG-------ETIEIG------------NFDPKIATFWI--DSGKLKGVLVESGSPEE-FQLLPTLARSQPFVDK--  443 (469)
Q Consensus       388 ~G~~~~-------~~~~~~------------~~~~~~~~~~~--~~~~l~g~~~~~~~~~~-~~~~~~~~~~~~~~~~--  443 (469)
                      +|.+..       +.....            .....|.|+++  ++++|+|+++++..+.+ +..+..+|+.+.+++.  
T Consensus       371 vG~te~~a~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~k~~~~~~~~~ilG~~~~g~~a~e~i~~~~~ai~~~~~~~~l~  450 (482)
T 1ojt_A          371 VGETELSAKASARKITKANFPWAASGRAIANGCDKPFTKLIFDAETGRIIGGGIVGPNGGDMIGEVCLAIEMGCDAADIG  450 (482)
T ss_dssp             EECCHHHHHHHTCCEEEEEEEGGGCHHHHHTTCCSCEEEEEEETTTCBEEEEEEESTTHHHHHHHHHHHHHTTCBHHHHH
T ss_pred             EeCCHHHHHhcCCCEEEEEEEcCcchHHhhcCCCcEEEEEEEECCCCEEEEEEEECCCHHHHHHHHHHHHHCCCCHHHHh
Confidence            665421       111100            11234888888  46999999987777655 4445667888887763  


Q ss_pred             hhhcCCCcHHHHHHHHHhcCCc
Q 012165          444 AKLQQASSVEEALEIARAALPV  465 (469)
Q Consensus       444 ~~~~~~~~~~~~~~~~~~~~~~  465 (469)
                      ..+..||++.|++..|+.++..
T Consensus       451 ~~~~~~Pt~~e~~~~a~~~~~~  472 (482)
T 1ojt_A          451 KTIHPHPTLGESIGMAAEVALG  472 (482)
T ss_dssp             TSCCCSSSSTTHHHHHHHHHHT
T ss_pred             cCccCCCCHHHHHHHHHHHHhc
Confidence            2357899999999999876543

>2hqm_A GR, grase, glutathione reductase; glutathione reductase complexed with FAD, oxidoreductase; HET: NAG FAD GSH; 2.40A {Saccharomyces cerevisiae}

Probab=100.00  E-value=1.4e-40  Score=339.94  Aligned_cols=379  Identities=19%  Similarity=0.221  Sum_probs=257.1

Q ss_pred             CCCcEEEEcCcHHHHHHHHHHHHcCCCCCcEEEEcCCCCCCC--CCCCCc-ccc---------cCCCCCCCCCC------
Q 012165           50 ENREFVIVGGGNAAGYAARTFVEHGMADGRLCIVSKEAYAPY--ERPALT-KGY---------LFPLDKKPARL------  111 (469)
Q Consensus        50 ~~~~vvIIGgG~AGl~aA~~L~~~g~~~~~V~vie~~~~~~~--~~~~l~-~~~---------~~~~~~~~~~~------  111 (469)
                      .++||+|||||+||+++|..|++.|.   +|+|||++...+-  +...++ +.+         +..........      
T Consensus        10 ~~~dVvVIGgG~aGl~aA~~l~~~g~---~V~liE~~~~GG~~~n~gciP~k~l~~~~~~~~~~~~~~~~g~~~~~~~~~   86 (479)
T 2hqm_A           10 KHYDYLVIGGGSGGVASARRAASYGA---KTLLVEAKALGGTCVNVGCVPKKVMWYASDLATRVSHANEYGLYQNLPLDK   86 (479)
T ss_dssp             CEEEEEEECCSHHHHHHHHHHHHTSC---CEEEEESSCTTHHHHHHSHHHHHHHHHHHHHHHHHTTTTTTTBSTTSCCSG
T ss_pred             ccCCEEEEcCCHHHHHHHHHHHHCCC---cEEEEeCCCcCCcCcccCcHHHHHHHHHHHHHHHHHhHHhcCccccccccc
Confidence            45899999999999999999999987   7999999742100  000000 000         00000000000      


Q ss_pred             --CCC--ccccC------CCCCCCCHhHHHHCCcEEEeCCcEEEEeCCCcEEEeCCCe--EEEeccEEeccCCCCCcCC-
Q 012165          112 --PGF--HTCVG------SGGERQTPEWYKEKGIEMIYQDPVTSIDIEKQTLITNSGK--LLKYGSLIVATGCTASRFP-  178 (469)
Q Consensus       112 --~~~--~~~~~------~~~~~~~~~~~~~~~i~~~~~~~v~~id~~~~~v~~~~g~--~~~yd~lVlAtG~~~~~~~-  178 (469)
                        +.+  .....      ..........+++.+++++.+ ++..++.....|.+.+|+  ++.||+||||||++|.. | 
T Consensus        87 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gv~~~~g-~~~~i~~~~~~v~~~~g~~~~~~~d~lviAtGs~p~~-p~  164 (479)
T 2hqm_A           87 EHLTFNWPEFKQKRDAYVHRLNGIYQKNLEKEKVDVVFG-WARFNKDGNVEVQKRDNTTEVYSANHILVATGGKAIF-PE  164 (479)
T ss_dssp             GGCCBCHHHHHHHHHHHHHHHHHHHHHHHHHTTEEEEEE-EEEECTTSCEEEEESSSCCEEEEEEEEEECCCEEECC-CT
T ss_pred             ccCccCHHHHHHHHHHHHHHHHHHHHHHHHhCCCEEEEe-EEEEeeCCEEEEEeCCCcEEEEEeCEEEEcCCCCCCC-CC
Confidence              000  00000      000000123455789999987 577777766677777776  79999999999999874 4 


Q ss_pred             CCCCCCcCcEEEecCHHHHHHHHHhhhcCCeEEEEcCChHHHHHHHHHHhCCCeEe------------------eeHHHH
Q 012165          179 EKIGGYLPGVHYIRDVADADALISSLEKAKKVVVVGGGYIGMEVAAAAVGWKLDTT------------------RYEQLY  240 (469)
Q Consensus       179 ~~~g~~~~~v~~~~~~~~~~~~~~~~~~~~~vvVvG~G~~g~e~A~~l~~~g~~v~------------------~~~~~l  240 (469)
                      .++|.  +.   ..+   ++.+......+++++|||+|++|+|+|..|.++|.+|+                  .+.+.+
T Consensus       165 ~i~g~--~~---~~~---~~~~~~l~~~~~~vvViGgG~ig~E~A~~l~~~g~~Vtlv~~~~~~l~~~d~~~~~~l~~~l  236 (479)
T 2hqm_A          165 NIPGF--EL---GTD---SDGFFRLEEQPKKVVVVGAGYIGIELAGVFHGLGSETHLVIRGETVLRKFDECIQNTITDHY  236 (479)
T ss_dssp             TSTTG--GG---SBC---HHHHHHCSSCCSEEEEECSSHHHHHHHHHHHHTTCEEEEECSSSSSCTTSCHHHHHHHHHHH
T ss_pred             CCCCc--cc---ccc---hHHHhcccccCCeEEEECCCHHHHHHHHHHHHcCCceEEEEeCCccccccCHHHHHHHHHHH
Confidence            55553  11   122   33333334568999999999999999999999999988                  356778


Q ss_pred             HHcCcEEEcCCeEEEEEeCCCCcEEEEEcCCC-CEEeCCEEEEccCCccCCch-hhhcCCccc-CCCEEeCCCCCCCCCc
Q 012165          241 QQNGVKFVKGASIKNLEAGSDGRVAAVKLEDG-STIDADTIVIGIGAKPTVSP-FERVGLNSS-VGGIQVDGQFRTRMPG  317 (469)
Q Consensus       241 ~~~gV~~~~~~~v~~i~~~~~~~v~~v~~~~g-~~i~~D~vi~a~G~~p~~~~-~~~~gl~~~-~g~i~Vd~~~~t~~~~  317 (469)
                      ++.||+++++++|++++.++++.+..+.+++| +++++|.||+|+|++||+.+ ++.+|++.+ +|+|.||+++||+.|+
T Consensus       237 ~~~Gv~i~~~~~v~~i~~~~~~~~~~v~~~~G~~~i~~D~vv~a~G~~p~~~l~l~~~gl~~~~~G~i~vd~~~~t~~~~  316 (479)
T 2hqm_A          237 VKEGINVHKLSKIVKVEKNVETDKLKIHMNDSKSIDDVDELIWTIGRKSHLGMGSENVGIKLNSHDQIIADEYQNTNVPN  316 (479)
T ss_dssp             HHHTCEEECSCCEEEEEECC-CCCEEEEETTSCEEEEESEEEECSCEEECCCSSGGGGTCCBCTTSCBCCCTTCBCSSTT
T ss_pred             HhCCeEEEeCCEEEEEEEcCCCcEEEEEECCCcEEEEcCEEEECCCCCCccccChhhcCceECCCCCEeECCCCccCCCC
Confidence            89999999999999998654453346888899 78999999999999999977 788899876 5789999999999999


Q ss_pred             eEEeccccccCCccCCcccccchHHHHHHHHHHHHHHHhcCC---C--CCCCCCCceeeecccccCCCcceeeEEeecCC
Q 012165          318 IFAIGDVAAFPLKMYDRTARVEHVDHARQSAQHCIKALLSAQ---T--HTYDYLPYFYSRVFEYEGSPRKVWWQFFGDNV  392 (469)
Q Consensus       318 Vfa~GD~a~~~~~~~~~~~~~~~~~~A~~~a~~~a~~i~~~~---~--~~~~~~p~~~~~~~~~~g~~~~~~~~~~G~~~  392 (469)
                      |||+|||+..+.          .+..|..+|+.+|+||++..   .  ..|..+|+   ..|..+.      +..+|...
T Consensus       317 IyA~GD~~~~~~----------~~~~A~~~g~~aa~~i~~~~~~~~~~~~~~~~p~---~~~~~~~------~~~vGl~e  377 (479)
T 2hqm_A          317 IYSLGDVVGKVE----------LTPVAIAAGRKLSNRLFGPEKFRNDKLDYENVPS---VIFSHPE------AGSIGISE  377 (479)
T ss_dssp             EEECGGGTTSSC----------CHHHHHHHHHHHHHHHHSCGGGTTCCCCCTTCCE---EECCSSC------EEEEECCH
T ss_pred             EEEEEecCCCcc----------cHHHHHHHHHHHHHHhcCCCccCcccCCCCCCCe---EEECCCC------eEEEeCCH
Confidence            999999986432          45679999999999999643   2  23445664   2232211      44455432


Q ss_pred             Cc---------EEEE------------ccCCCcEEEEEEe--CCEEEEEEeecCChHHhHHH-HHHHhCCCCCCh--hhh
Q 012165          393 GE---------TIEI------------GNFDPKIATFWID--SGKLKGVLVESGSPEEFQLL-PTLARSQPFVDK--AKL  446 (469)
Q Consensus       393 ~~---------~~~~------------~~~~~~~~~~~~~--~~~l~g~~~~~~~~~~~~~~-~~~~~~~~~~~~--~~~  446 (469)
                      .+         ....            ......|.|++++  +++|+|+++++.++.++... ..+|+.+.+++.  ..+
T Consensus       378 ~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~kli~~~~~~~ilG~~~~g~~a~~~i~~~~~ai~~~~t~~~l~~~~  457 (479)
T 2hqm_A          378 KEAIEKYGKENIKVYNSKFTAMYYAMLSEKSPTRYKIVCAGPNEKVVGLHIVGDSSAEILQGFGVAIKMGATKADFDNCV  457 (479)
T ss_dssp             HHHHHHHCGGGEEEEEEEECCGGGGGCSSCCCEEEEEEEETTTTEEEEEEEESTTHHHHHHHHHHHHHTTCBHHHHHTSC
T ss_pred             HHHHhcCCCCcEEEEEEeccHHHHHhhcCCCcEEEEEEEECCCCEEEEEEEECCCHHHHHHHHHHHHHCCCCHHHHhhCc
Confidence            10         1110            0112347788775  59999999977777665544 456788877662  235


Q ss_pred             cCCCcHHHHHHHHH
Q 012165          447 QQASSVEEALEIAR  460 (469)
Q Consensus       447 ~~~~~~~~~~~~~~  460 (469)
                      ..||++.|+++.|+
T Consensus       458 ~~hPt~~e~~~~~~  471 (479)
T 2hqm_A          458 AIHPTSAEELVTMR  471 (479)
T ss_dssp             CCSSCSGGGGGSCC
T ss_pred             CCCCChHHHHHHHH
Confidence            78999999987654

>1ebd_A E3BD, dihydrolipoamide dehydrogenase; redox-active center, glycolysis, oxidoreductase; HET: FAD; 2.60A {Geobacillus stearothermophilus} SCOP: c.3.1.5 c.3.1.5 d.87.1.1

Probab=100.00  E-value=3.8e-40  Score=335.00  Aligned_cols=378  Identities=21%  Similarity=0.277  Sum_probs=256.0

Q ss_pred             CCcEEEEcCcHHHHHHHHHHHHcCCCCCcEEEEcCCCCCCCC---CCCC-cccccC--------------C--CCCCCCC
Q 012165           51 NREFVIVGGGNAAGYAARTFVEHGMADGRLCIVSKEAYAPYE---RPAL-TKGYLF--------------P--LDKKPAR  110 (469)
Q Consensus        51 ~~~vvIIGgG~AGl~aA~~L~~~g~~~~~V~vie~~~~~~~~---~~~l-~~~~~~--------------~--~~~~~~~  110 (469)
                      ++||+|||||+||+++|.+|++.|+   +|+|||++. .+..   .... ++.++.              .  ......+
T Consensus         3 ~~dvvIIGgG~aGl~aA~~l~~~g~---~V~lie~~~-~gG~~~~~g~~p~k~l~~~~~~~~~~~~~~~~g~~~~~~~~~   78 (455)
T 1ebd_A            3 ETETLVVGAGPGGYVAAIRAAQLGQ---KVTIVEKGN-LGGVCLNVGCIPSKALISASHRYEQAKHSEEMGIKAENVTID   78 (455)
T ss_dssp             ECSEEEECCSHHHHHHHHHHHHTTC---CEEEEESSC-TTHHHHHTSHHHHHHHHHHHHHHHHHHTCGGGTEECCSCEEC
T ss_pred             cCCEEEECCCHHHHHHHHHHHhCCC---eEEEEECCC-CCCcCcCcCchhhHHHHHHHHHHHHHHHHHhcCcccCCCccC
Confidence            4799999999999999999999987   799999973 2100   0000 000000              0  0000000


Q ss_pred             CCCCcccc---CCCCCCCCHhHHHHCCcEEEeCCcEEEEeCCCcEEEeCCC-eEEEeccEEeccCCCCCcCCCCCCCCcC
Q 012165          111 LPGFHTCV---GSGGERQTPEWYKEKGIEMIYQDPVTSIDIEKQTLITNSG-KLLKYGSLIVATGCTASRFPEKIGGYLP  186 (469)
Q Consensus       111 ~~~~~~~~---~~~~~~~~~~~~~~~~i~~~~~~~v~~id~~~~~v~~~~g-~~~~yd~lVlAtG~~~~~~~~~~g~~~~  186 (469)
                      ++.+....   .........+++++.+++++.++. ..++.....|.+.+| +++.||+||+|||++|.. |++++.+..
T Consensus        79 ~~~~~~~~~~~~~~l~~~~~~~~~~~gv~~~~g~~-~~id~~~v~V~~~~G~~~i~~d~lViATGs~p~~-~~~~g~~~~  156 (455)
T 1ebd_A           79 FAKVQEWKASVVKKLTGGVEGLLKGNKVEIVKGEA-YFVDANTVRVVNGDSAQTYTFKNAIIATGSRPIE-LPNFKFSNR  156 (455)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHTTTCEEEESEE-EEEETTEEEEEETTEEEEEECSEEEECCCEEECC-BTTBCCCSS
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHhCCCEEEEEEE-EEccCCeEEEEeCCCcEEEEeCEEEEecCCCCCC-CCCCCccce
Confidence            00000000   000000013456678999999754 447776667777777 679999999999999874 444553222


Q ss_pred             cEEEecCHHHHHHHHHhhhcCCeEEEEcCChHHHHHHHHHHhCCCeEe------------------eeHHHHHHcCcEEE
Q 012165          187 GVHYIRDVADADALISSLEKAKKVVVVGGGYIGMEVAAAAVGWKLDTT------------------RYEQLYQQNGVKFV  248 (469)
Q Consensus       187 ~v~~~~~~~~~~~~~~~~~~~~~vvVvG~G~~g~e~A~~l~~~g~~v~------------------~~~~~l~~~gV~~~  248 (469)
                       +   .+..+   .......+++++|||+|++|+|+|..|+++|.+|+                  .+.+.+++.||+++
T Consensus       157 -v---~~~~~---~~~~~~~~~~vvViGgG~~g~e~A~~l~~~g~~Vtlv~~~~~~l~~~~~~~~~~l~~~l~~~gv~i~  229 (455)
T 1ebd_A          157 -I---LDSTG---ALNLGEVPKSLVVIGGGYIGIELGTAYANFGTKVTILEGAGEILSGFEKQMAAIIKKRLKKKGVEVV  229 (455)
T ss_dssp             -E---ECHHH---HHTCSSCCSEEEEECCSHHHHHHHHHHHHTTCEEEEEESSSSSSTTSCHHHHHHHHHHHHHTTCEEE
T ss_pred             -E---ecHHH---HhccccCCCeEEEECCCHHHHHHHHHHHHcCCcEEEEEcCCccccccCHHHHHHHHHHHHHCCCEEE
Confidence             2   23233   22223357999999999999999999999999987                  34567889999999


Q ss_pred             cCCeEEEEEeCCCCcEEEEEcC---CCCEEeCCEEEEccCCccCCch--hhhcCCccc-CCCEEeCCCCCCCCCceEEec
Q 012165          249 KGASIKNLEAGSDGRVAAVKLE---DGSTIDADTIVIGIGAKPTVSP--FERVGLNSS-VGGIQVDGQFRTRMPGIFAIG  322 (469)
Q Consensus       249 ~~~~v~~i~~~~~~~v~~v~~~---~g~~i~~D~vi~a~G~~p~~~~--~~~~gl~~~-~g~i~Vd~~~~t~~~~Vfa~G  322 (469)
                      +++++++++.+++ .+ .+.+.   +++++++|.||+|+|++|++++  ++++|++.+ +|+|.||+++||+.|+|||+|
T Consensus       230 ~~~~v~~i~~~~~-~~-~v~~~~~g~~~~~~~D~vv~a~G~~p~~~~l~~~~~g~~~~~~G~i~vd~~~~t~~~~Iya~G  307 (455)
T 1ebd_A          230 TNALAKGAEERED-GV-TVTYEANGETKTIDADYVLVTVGRRPNTDELGLEQIGIKMTNRGLIEVDQQCRTSVPNIFAIG  307 (455)
T ss_dssp             ESEEEEEEEEETT-EE-EEEEEETTEEEEEEESEEEECSCEEESCSSSSTTTTTCCBCTTSCBCCCTTCBCSSTTEEECG
T ss_pred             eCCEEEEEEEeCC-eE-EEEEEeCCceeEEEcCEEEECcCCCcccCcCChhhcCCccCCCCCEeeCCCcccCCCCEEEEe
Confidence            9999999985433 23 34543   4568999999999999999987  678888876 577999999999999999999


Q ss_pred             cccccCCccCCcccccchHHHHHHHHHHHHHHHhcCCCCC--CCCCCceeeecccccCCCcceeeEEeecCCC-------
Q 012165          323 DVAAFPLKMYDRTARVEHVDHARQSAQHCIKALLSAQTHT--YDYLPYFYSRVFEYEGSPRKVWWQFFGDNVG-------  393 (469)
Q Consensus       323 D~a~~~~~~~~~~~~~~~~~~A~~~a~~~a~~i~~~~~~~--~~~~p~~~~~~~~~~g~~~~~~~~~~G~~~~-------  393 (469)
                      ||+..+.          .+..|..+|+.+|++|++. ..+  |..+|+  ...++.+       +..+|....       
T Consensus       308 D~~~~~~----------~~~~A~~~g~~aa~~i~~~-~~~~~~~~~p~--~~~~~~~-------~a~vG~~e~~a~~~g~  367 (455)
T 1ebd_A          308 DIVPGPA----------LAHKASYEGKVAAEAIAGH-PSAVDYVAIPA--VVFSDPE-------CASVGYFEQQAKDEGI  367 (455)
T ss_dssp             GGSSSCC----------CHHHHHHHHHHHHHHHTSC-CCCCCCSCCCE--EECSSSC-------EEEEECCHHHHHTTTC
T ss_pred             ccCCCcc----------cHHHHHHHHHHHHHHHcCC-CccCCCCCCCE--EEECCCc-------eEEEeCCHHHHHhcCC
Confidence            9997542          3456999999999999974 333  444564  3322221       445554321       


Q ss_pred             cEEEEc------------cCCCcEEEEEEe--CCEEEEEEeecCChHH-hHHHHHHHhCCCCCCh--hhhcCCCcHHHHH
Q 012165          394 ETIEIG------------NFDPKIATFWID--SGKLKGVLVESGSPEE-FQLLPTLARSQPFVDK--AKLQQASSVEEAL  456 (469)
Q Consensus       394 ~~~~~~------------~~~~~~~~~~~~--~~~l~g~~~~~~~~~~-~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~  456 (469)
                      +.....            .....|.|++++  +++|+|+++++.++.+ +..+..+|+.+.+++.  ..+..||+++|++
T Consensus       368 ~~~~~~~~~~~~~~~~~~~~~~~~~k~~~~~~~~~ilG~~~~g~~a~e~i~~~~~ai~~~~~~~~l~~~~~~~Pt~~e~~  447 (455)
T 1ebd_A          368 DVIAAKFPFAANGRALALNDTDGFLKLVVRKEDGVIIGAQIIGPNASDMIAELGLAIEAGMTAEDIALTIHAHPTLGEIA  447 (455)
T ss_dssp             CEEEEEEEGGGCHHHHHHTCCCCEEEEEEETTTTEEEEEEEESTTHHHHHHHHHHHHHHTCBHHHHHHSCCCTTSSTHHH
T ss_pred             CEEEEEEEcCcchHHhhcCCCcEEEEEEEECCCCEEEEEEEeCCCHHHHHHHHHHHHHCCCCHHHHhhcccCCCCHHHHH
Confidence            111110            112358888886  6999999987777655 5555667888887762  3357889999999


Q ss_pred             HHHHhcC
Q 012165          457 EIARAAL  463 (469)
Q Consensus       457 ~~~~~~~  463 (469)
                      +.|++++
T Consensus       448 ~~~~~~~  454 (455)
T 1ebd_A          448 MEAAEVA  454 (455)
T ss_dssp             HHHHHHT
T ss_pred             HHHHHHh
Confidence            9998754

>1v59_A Dihydrolipoamide dehydrogenase; 2-oxoacid dehydroganese complex, pyruvate dehydrogenase complex; HET: FAD NAD; 2.20A {Saccharomyces cerevisiae} SCOP: c.3.1.5 c.3.1.5 d.87.1.1 PDB: 1jeh_A*

Probab=100.00  E-value=2.2e-40  Score=338.94  Aligned_cols=385  Identities=19%  Similarity=0.271  Sum_probs=258.4

Q ss_pred             CCcEEEEcCcHHHHHHHHHHHHcCCCCCcEEEEcCCCCCCCCC---CCC-cccccC------------CCCCC------C
Q 012165           51 NREFVIVGGGNAAGYAARTFVEHGMADGRLCIVSKEAYAPYER---PAL-TKGYLF------------PLDKK------P  108 (469)
Q Consensus        51 ~~~vvIIGgG~AGl~aA~~L~~~g~~~~~V~vie~~~~~~~~~---~~l-~~~~~~------------~~~~~------~  108 (469)
                      ++||+|||||+||+++|..|++.|+   +|+|||+++.++...   ... ++.++.            .....      .
T Consensus         5 ~~dVvIIGgG~aGl~aA~~l~~~G~---~V~liE~~~~~GG~~~~~g~~psk~l~~~~~~~~~~~~~~~~~gi~~~~~~~   81 (478)
T 1v59_A            5 SHDVVIIGGGPAGYVAAIKAAQLGF---NTACVEKRGKLGGTCLNVGCIPSKALLNNSHLFHQMHTEAQKRGIDVNGDIK   81 (478)
T ss_dssp             EEEEEEECCSHHHHHHHHHHHHTTC---CEEEEESSSSSSHHHHHHSHHHHHHHHHHHHHHHHHHHTSGGGTEEECSCEE
T ss_pred             cCCEEEECCCHHHHHHHHHHHHCCC---eEEEEecCCCcCCccceeccHHHHHHHHHHHHHHHHHHHHHhcCcccCCCCc
Confidence            5799999999999999999999987   799999965432100   000 000000            00000      0


Q ss_pred             CCCCCCcccc---CCCCCCCCHhHHHHCCcEEEeCCcEEEEeCCCcEEEeCCC--eE------EEeccEEeccCCCCCcC
Q 012165          109 ARLPGFHTCV---GSGGERQTPEWYKEKGIEMIYQDPVTSIDIEKQTLITNSG--KL------LKYGSLIVATGCTASRF  177 (469)
Q Consensus       109 ~~~~~~~~~~---~~~~~~~~~~~~~~~~i~~~~~~~v~~id~~~~~v~~~~g--~~------~~yd~lVlAtG~~~~~~  177 (469)
                      .++..+....   .........+++++.+++++.++.+. .+....+|.+.+|  ++      +.||+||+|||++|+.+
T Consensus        82 ~~~~~~~~~~~~~~~~l~~~~~~~~~~~gv~~~~g~~~~-~~~~~v~V~~~~G~~~~~~~~~~i~~d~lViAtGs~p~~~  160 (478)
T 1v59_A           82 INVANFQKAKDDAVKQLTGGIELLFKKNKVTYYKGNGSF-EDETKIRVTPVDGLEGTVKEDHILDVKNIIVATGSEVTPF  160 (478)
T ss_dssp             ECHHHHHHHHHHHHHHHHHHHHHHHHHTTCEEEESEEEE-SSSSEEEEECCTTCTTCCSSCEEEEEEEEEECCCEEECCC
T ss_pred             cCHHHHHHHHHHHHHHHHHHHHHHHHhCCCEEEEEEEEE-ccCCeEEEEecCCCcccccccceEEeCEEEECcCCCCCCC
Confidence            0000000000   00000002235667899999986554 3444445666666  56      99999999999987533


Q ss_pred             CCCCCCCcCcEEEecCHHHHHHHHHhhhcCCeEEEEcCChHHHHHHHHHHhCCCeEe------------------eeHHH
Q 012165          178 PEKIGGYLPGVHYIRDVADADALISSLEKAKKVVVVGGGYIGMEVAAAAVGWKLDTT------------------RYEQL  239 (469)
Q Consensus       178 ~~~~g~~~~~v~~~~~~~~~~~~~~~~~~~~~vvVvG~G~~g~e~A~~l~~~g~~v~------------------~~~~~  239 (469)
                      |   +...++ ..+.+..+..   .....+++++|||+|++|+|+|..|+++|.+|+                  .+.+.
T Consensus       161 ~---g~~~~~-~~v~~~~~~~---~~~~~~~~vvViGgG~~g~e~A~~l~~~g~~Vtlv~~~~~~l~~~~~~~~~~l~~~  233 (478)
T 1v59_A          161 P---GIEIDE-EKIVSSTGAL---SLKEIPKRLTIIGGGIIGLEMGSVYSRLGSKVTVVEFQPQIGASMDGEVAKATQKF  233 (478)
T ss_dssp             T---TCCCCS-SSEECHHHHT---TCSSCCSEEEEECCSHHHHHHHHHHHHTTCEEEEECSSSSSSSSSCHHHHHHHHHH
T ss_pred             C---CCCCCC-ceEEcHHHHH---hhhccCceEEEECCCHHHHHHHHHHHHcCCEEEEEEeCCccccccCHHHHHHHHHH
Confidence            3   333333 1223333332   222357999999999999999999999999988                  45677


Q ss_pred             HHHcCcEEEcCCeEEEEEeCCCCcEEEEEcC-----CCCEEeCCEEEEccCCccCCc--hhhhcCCccc-CCCEEeCCCC
Q 012165          240 YQQNGVKFVKGASIKNLEAGSDGRVAAVKLE-----DGSTIDADTIVIGIGAKPTVS--PFERVGLNSS-VGGIQVDGQF  311 (469)
Q Consensus       240 l~~~gV~~~~~~~v~~i~~~~~~~v~~v~~~-----~g~~i~~D~vi~a~G~~p~~~--~~~~~gl~~~-~g~i~Vd~~~  311 (469)
                      +++.||++++++.+++++..+++....+.++     +++++++|.||+|+|++||++  +++++|++.+ +|+|.||+++
T Consensus       234 l~~~gv~i~~~~~v~~i~~~~~~~~~~v~~~~~~~g~~~~~~~D~vv~a~G~~p~~~~l~l~~~g~~~~~~G~i~vd~~~  313 (478)
T 1v59_A          234 LKKQGLDFKLSTKVISAKRNDDKNVVEIVVEDTKTNKQENLEAEVLLVAVGRRPYIAGLGAEKIGLEVDKRGRLVIDDQF  313 (478)
T ss_dssp             HHHTTCEEECSEEEEEEEEETTTTEEEEEEEETTTTEEEEEEESEEEECSCEEECCTTSCTTTTTCCBCTTSCBCCCTTS
T ss_pred             HHHCCCEEEeCCEEEEEEEecCCCeEEEEEEEcCCCCceEEECCEEEECCCCCcCCCCCCchhcCceeCCCCCEeECcCC
Confidence            8899999999999999985212333356655     456899999999999999998  7889999876 6779999999


Q ss_pred             CCCCCceEEeccccccCCccCCcccccchHHHHHHHHHHHHHHHhcCCC-CCCCCCCceeeecccccCCCcceeeEEeec
Q 012165          312 RTRMPGIFAIGDVAAFPLKMYDRTARVEHVDHARQSAQHCIKALLSAQT-HTYDYLPYFYSRVFEYEGSPRKVWWQFFGD  390 (469)
Q Consensus       312 ~t~~~~Vfa~GD~a~~~~~~~~~~~~~~~~~~A~~~a~~~a~~i~~~~~-~~~~~~p~~~~~~~~~~g~~~~~~~~~~G~  390 (469)
                      ||+.|+|||+|||+..+.          .+..|..||+.+|++|++... ..|..+|++|.....         +..+|.
T Consensus       314 ~t~~~~IyA~GD~~~~~~----------~~~~A~~~g~~aa~~i~~~~~~~~~~~~p~~~~~~~~---------~a~vG~  374 (478)
T 1v59_A          314 NSKFPHIKVVGDVTFGPM----------LAHKAEEEGIAAVEMLKTGHGHVNYNNIPSVMYSHPE---------VAWVGK  374 (478)
T ss_dssp             BCSSTTEEECGGGSSSCC----------CHHHHHHHHHHHHHHHHHSCCCCCTTSCCEEECSSSE---------EEEEEC
T ss_pred             ccCCCCEEEeeccCCCcc----------cHHHHHHHHHHHHHHHcCCCCCCCCCCCCEEEEcCCc---------EEEEEC
Confidence            999999999999998543          345699999999999997432 346778876654322         444554


Q ss_pred             CCC-------cEEEEc------------cCCCcEEEEEEe--CCEEEEEEeecCChHH-hHHHHHHHhCCCCCC-hhh-h
Q 012165          391 NVG-------ETIEIG------------NFDPKIATFWID--SGKLKGVLVESGSPEE-FQLLPTLARSQPFVD-KAK-L  446 (469)
Q Consensus       391 ~~~-------~~~~~~------------~~~~~~~~~~~~--~~~l~g~~~~~~~~~~-~~~~~~~~~~~~~~~-~~~-~  446 (469)
                      ...       +.....            .....+.|++++  +++|+|+++++..+.+ +..+..+|+.+.+++ ... .
T Consensus       375 ~e~~a~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~k~~~~~~~~~ilG~~~~g~~a~~~i~~~~~~i~~~~~~~~l~~~~  454 (478)
T 1v59_A          375 TEEQLKEAGIDYKIGKFPFAANSRAKTNQDTEGFVKILIDSKTERILGAHIIGPNAGEMIAEAGLALEYGASAEDVARVC  454 (478)
T ss_dssp             CHHHHHHTTCCEEEEEEEGGGCHHHHHTTCCCCEEEEEEETTTCBEEEEEEEETTHHHHHHHHHHHHHTTCBHHHHHTSC
T ss_pred             CHHHHHHcCCCEEEEEEecccchhhhhcCCCcEEEEEEEECCCCEEEEEEEECCCHHHHHHHHHHHHHCCCCHHHHhhCC
Confidence            321       111100            012346677665  6999999987776644 666777888888775 333 4


Q ss_pred             cCCCcHHHHHHHHHhcCCc
Q 012165          447 QQASSVEEALEIARAALPV  465 (469)
Q Consensus       447 ~~~~~~~~~~~~~~~~~~~  465 (469)
                      ..+|++.|++..|+.++..
T Consensus       455 ~~~Pt~~e~~~~~~~~~~~  473 (478)
T 1v59_A          455 HAHPTLSEAFKEANMAAYD  473 (478)
T ss_dssp             CCTTCTTHHHHHHHHHHHS
T ss_pred             CCCCCHHHHHHHHHHHHhc
Confidence            6789999999999876544

>2eq6_A Pyruvate dehydrogenase complex, dihydrolipoamide dehydrogenase E3 component; oxidoreductase, homodimer, structural genomics, NPPSFA; HET: FAD; 1.60A {Thermus thermophilus} PDB: 2eq8_A* 2eq9_A*

Probab=100.00  E-value=4.7e-40  Score=334.75  Aligned_cols=379  Identities=20%  Similarity=0.266  Sum_probs=256.6

Q ss_pred             CCcEEEEcCcHHHHHHHHHHHHcCCCCCcEEEEcCCCCCCC--CCCCC-cccccC--------------CC-CCCCCCCC
Q 012165           51 NREFVIVGGGNAAGYAARTFVEHGMADGRLCIVSKEAYAPY--ERPAL-TKGYLF--------------PL-DKKPARLP  112 (469)
Q Consensus        51 ~~~vvIIGgG~AGl~aA~~L~~~g~~~~~V~vie~~~~~~~--~~~~l-~~~~~~--------------~~-~~~~~~~~  112 (469)
                      ++||+|||||+||+++|..|++.|+   +|+|||+++..+.  ....+ ++.++.              +. .....++.
T Consensus         6 ~~dvvIIG~G~aG~~aA~~l~~~g~---~V~lie~~~~GG~~~~~g~iP~k~l~~~~~~~~~~~~~~~~g~~~~~~~~~~   82 (464)
T 2eq6_A            6 TYDLIVIGTGPGGYHAAIRAAQLGL---KVLAVEAGEVGGVCLNVGCIPTKALLHAAETLHHLKVAEGFGLKAKPELDLK   82 (464)
T ss_dssp             EEEEEEECCSHHHHHHHHHHHHTTC---CEEEEESSCTTHHHHHTSHHHHHHHHHHHHHHHHHHHHGGGTEECCCEECHH
T ss_pred             cCCEEEECcCHHHHHHHHHHHHCCC---eEEEEeCCCCCCCCCCcChHHHHHHHHHHHHHHHHHhHHhcCCCCCCCcCHH
Confidence            5899999999999999999999987   7999999862100  00000 000000              00 00000000


Q ss_pred             CCcccc---CCCCCCCCHhHHHHCCcEEEeCCcEEEEeCCCcEEEeCCCeEEEeccEEeccCCCCCcCCCCCCCCcCcEE
Q 012165          113 GFHTCV---GSGGERQTPEWYKEKGIEMIYQDPVTSIDIEKQTLITNSGKLLKYGSLIVATGCTASRFPEKIGGYLPGVH  189 (469)
Q Consensus       113 ~~~~~~---~~~~~~~~~~~~~~~~i~~~~~~~v~~id~~~~~v~~~~g~~~~yd~lVlAtG~~~~~~~~~~g~~~~~v~  189 (469)
                      .+....   ..........++++.+++++.++ +..++.  ++|.+. |++++||+||||||++|+.+|.+++.  ..++
T Consensus        83 ~~~~~~~~~~~~l~~~~~~~~~~~gv~~~~g~-~~~~~~--~~v~v~-g~~~~~d~lViATGs~p~~p~gi~~~--~~v~  156 (464)
T 2eq6_A           83 KLGGWRDQVVKKLTGGVGTLLKGNGVELLRGF-ARLVGP--KEVEVG-GERYGAKSLILATGSEPLELKGFPFG--EDVW  156 (464)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHTTCEEEESC-EEEEET--TEEEET-TEEEEEEEEEECCCEEECCBTTBCCS--SSEE
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHhCCCEEEeee-EEEccC--CEEEEc-cEEEEeCEEEEcCCCCCCCCCCCCCC--CcEE
Confidence            000000   00000001235667899999975 444653  577776 77899999999999998754434441  1232


Q ss_pred             EecCHHHHHHHHHhhh-cCCeEEEEcCChHHHHHHHHHHhCCCeEe------------------eeHHHHHHcCcEEEcC
Q 012165          190 YIRDVADADALISSLE-KAKKVVVVGGGYIGMEVAAAAVGWKLDTT------------------RYEQLYQQNGVKFVKG  250 (469)
Q Consensus       190 ~~~~~~~~~~~~~~~~-~~~~vvVvG~G~~g~e~A~~l~~~g~~v~------------------~~~~~l~~~gV~~~~~  250 (469)
                         +..+.   ..... .+++++|||+|++|+|+|..|+++|.+|+                  .+.+.+++.||+++++
T Consensus       157 ---~~~~~---~~l~~~~~~~vvViGgG~~g~e~A~~l~~~g~~Vtlv~~~~~~l~~~~~~~~~~l~~~l~~~gV~i~~~  230 (464)
T 2eq6_A          157 ---DSTRA---LKVEEGLPKRLLVIGGGAVGLELGQVYRRLGAEVTLIEYMPEILPQGDPETAALLRRALEKEGIRVRTK  230 (464)
T ss_dssp             ---CHHHH---TCGGGCCCSEEEEECCSHHHHHHHHHHHHTTCEEEEECSSSSSSTTSCHHHHHHHHHHHHHTTCEEECS
T ss_pred             ---cHHHH---HhhhhhcCCEEEEECCCHHHHHHHHHHHHCCCeEEEEEcCCccccccCHHHHHHHHHHHHhcCCEEEcC
Confidence               32333   22223 57999999999999999999999999988                  3467788999999999


Q ss_pred             CeEEEEEeCCCCcEEEEEcC-C--CC--EEeCCEEEEccCCccCCch--hhhcCCccc-CCCEEeCCCCCCCCCceEEec
Q 012165          251 ASIKNLEAGSDGRVAAVKLE-D--GS--TIDADTIVIGIGAKPTVSP--FERVGLNSS-VGGIQVDGQFRTRMPGIFAIG  322 (469)
Q Consensus       251 ~~v~~i~~~~~~~v~~v~~~-~--g~--~i~~D~vi~a~G~~p~~~~--~~~~gl~~~-~g~i~Vd~~~~t~~~~Vfa~G  322 (469)
                      +.+++++.++ +.+ .+.+. +  |+  ++++|.||+|+|++|++++  ++.+|+..+ +|+|.||+++||+.|+|||+|
T Consensus       231 ~~v~~i~~~~-~~~-~v~~~~~~~g~~~~i~~D~vv~a~G~~p~~~~l~l~~~g~~~~~~G~i~vd~~~~t~~~~Iya~G  308 (464)
T 2eq6_A          231 TKAVGYEKKK-DGL-HVRLEPAEGGEGEEVVVDKVLVAVGRKPRTEGLGLEKAGVKVDERGFIRVNARMETSVPGVYAIG  308 (464)
T ss_dssp             EEEEEEEEET-TEE-EEEEEETTCCSCEEEEESEEEECSCEEESCTTSSHHHHTCCBCTTSCBCCCTTCBCSSTTEEECG
T ss_pred             CEEEEEEEeC-CEE-EEEEeecCCCceeEEEcCEEEECCCcccCCCCCChhhcCceecCCCCEEECCCcccCCCCEEEEe
Confidence            9999998643 333 46665 6  76  8999999999999999986  578888875 577999999999999999999


Q ss_pred             cccccCCccCCcccccchHHHHHHHHHHHHHHHhcCCC-CCCCCCCceeeecccccCCCcceeeEEeecCCC-------c
Q 012165          323 DVAAFPLKMYDRTARVEHVDHARQSAQHCIKALLSAQT-HTYDYLPYFYSRVFEYEGSPRKVWWQFFGDNVG-------E  394 (469)
Q Consensus       323 D~a~~~~~~~~~~~~~~~~~~A~~~a~~~a~~i~~~~~-~~~~~~p~~~~~~~~~~g~~~~~~~~~~G~~~~-------~  394 (469)
                      ||+..+.          .+..|..||+.+|++|++... ..+. +|++  . |..+      .+..+|....       +
T Consensus       309 D~~~~~~----------l~~~A~~~g~~aa~~i~g~~~~~~~~-~p~~--~-~~~~------~~a~vG~~e~~a~~~g~~  368 (464)
T 2eq6_A          309 DAARPPL----------LAHKAMREGLIAAENAAGKDSAFDYQ-VPSV--V-YTSP------EWAGVGLTEEEAKRAGYK  368 (464)
T ss_dssp             GGTCSSC----------CHHHHHHHHHHHHHHHTTCCCCCCCC-CCEE--E-CSSS------EEEEEECCHHHHHHTTCC
T ss_pred             ccCCCcc----------cHHHHHHHHHHHHHHhcCCCcccCCC-CCeE--E-ECCC------CEEEEeCCHHHHHhcCCC
Confidence            9997543          345699999999999997432 1344 6652  2 2211      1455664321       1


Q ss_pred             EEE--E----------ccCCCcEEEEEEe--CCEEEEEEeecCChHH-hHHHHHHHhCCCCCCh--hhhcCCCcHHHHHH
Q 012165          395 TIE--I----------GNFDPKIATFWID--SGKLKGVLVESGSPEE-FQLLPTLARSQPFVDK--AKLQQASSVEEALE  457 (469)
Q Consensus       395 ~~~--~----------~~~~~~~~~~~~~--~~~l~g~~~~~~~~~~-~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~  457 (469)
                      ...  .          ......|.|++++  +++|+|+++++..+.+ +..+..+|+.+.+++.  ..+..||++.|++.
T Consensus       369 ~~~~~~~~~~~~~~~~~~~~~g~~k~~~~~~~~~ilG~~~~g~~a~e~i~~~~~ai~~~~~~~~l~~~~~~~Pt~~e~~~  448 (464)
T 2eq6_A          369 VKVGKFPLAASGRALTLGGAEGMVKVVGDEETDLLLGVFIVGPQAGELIAEAALALEMGATLTDLALTVHPHPTLSESLM  448 (464)
T ss_dssp             EEEEEEEGGGCHHHHHTSCCCCEEEEEEETTTCBEEEEEEEETTHHHHHHHHHHHHHTTCBHHHHHHSCCCSSCTTHHHH
T ss_pred             EEEEEEEcCcchhhhhcCCCcEEEEEEEECCCCEEEEEEEECCCHHHHHHHHHHHHHCCCCHHHHhcCcCCCCChHHHHH
Confidence            111  0          0112347788886  6999999997777755 4556677888887763  33578999999999


Q ss_pred             HHHhcCCcc
Q 012165          458 IARAALPVE  466 (469)
Q Consensus       458 ~~~~~~~~~  466 (469)
                      .|++++..+
T Consensus       449 ~~~~~~~~~  457 (464)
T 2eq6_A          449 EAAEAFHKQ  457 (464)
T ss_dssp             HHHHHHTTC
T ss_pred             HHHHHHhcC
Confidence            998765543

>3urh_A Dihydrolipoyl dehydrogenase; PSI-biology, structural genomics, protein structure initiati YORK structural genomics research consortium; HET: FAD; 1.90A {Sinorhizobium meliloti}

Probab=100.00  E-value=1.7e-39  Score=333.22  Aligned_cols=386  Identities=18%  Similarity=0.272  Sum_probs=257.6

Q ss_pred             CCCCCcEEEEcCcHHHHHHHHHHHHcCCCCCcEEEEcCCCCCCCC------CCC----------------CcccccCCCC
Q 012165           48 ANENREFVIVGGGNAAGYAARTFVEHGMADGRLCIVSKEAYAPYE------RPA----------------LTKGYLFPLD  105 (469)
Q Consensus        48 ~~~~~~vvIIGgG~AGl~aA~~L~~~g~~~~~V~vie~~~~~~~~------~~~----------------l~~~~~~~~~  105 (469)
                      +++++||+|||||+||++||..|++.|+   +|+|||+.+.++..      .|.                +.. +-....
T Consensus        22 ~m~~~dVvVIGgG~aGl~aA~~la~~G~---~V~liEk~~~~GG~~~~~gciP~k~l~~~~~~~~~~~~~~~~-~g~~~~   97 (491)
T 3urh_A           22 SMMAYDLIVIGSGPGGYVCAIKAAQLGM---KVAVVEKRSTYGGTCLNVGCIPSKALLHASEMFHQAQHGLEA-LGVEVA   97 (491)
T ss_dssp             ----CCEEEECCSHHHHHHHHHHHHTTC---CEEEEESSSSSSHHHHHHSHHHHHHHHHHHHHHHHHHHSSGG-GTEECC
T ss_pred             hcccCCEEEECCCHHHHHHHHHHHHCCC---eEEEEecCCCCCCccccccchhhHHHHHHHHHHHHHHhhHhh-cCcccC
Confidence            3456999999999999999999999987   79999987654211      000                000 000000


Q ss_pred             CCCCCCCCCccc---cCCCCCCCCHhHHHHCCcEEEeCCcEEEEeCCCcEEEeCCC--eEEEeccEEeccCCCCCcCCCC
Q 012165          106 KKPARLPGFHTC---VGSGGERQTPEWYKEKGIEMIYQDPVTSIDIEKQTLITNSG--KLLKYGSLIVATGCTASRFPEK  180 (469)
Q Consensus       106 ~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~i~~~~~~~v~~id~~~~~v~~~~g--~~~~yd~lVlAtG~~~~~~~~~  180 (469)
                      ....+++.....   ...........++++.+++++.+ .+..++.....|.+.+|  .++.||+||||||++|..+   
T Consensus        98 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~g-~~~~~~~~~~~v~~~~g~~~~~~~d~lViATGs~p~~i---  173 (491)
T 3urh_A           98 NPKLNLQKMMAHKDATVKSNVDGVSFLFKKNKIDGFQG-TGKVLGQGKVSVTNEKGEEQVLEAKNVVIATGSDVAGI---  173 (491)
T ss_dssp             CCEECHHHHHHHHHHHHHHHHHHHHHHHHHTTCEEEES-EEEECSSSEEEEECTTSCEEEEECSEEEECCCEECCCB---
T ss_pred             CCccCHHHHHHHHHHHHHHHHHHHHHHHHhCCCEEEEE-EEEEecCCEEEEEeCCCceEEEEeCEEEEccCCCCCCC---
Confidence            000000000000   00000001123456789999986 55566766667777777  5799999999999986433   


Q ss_pred             CCCC--cCcEEEecCHHHHHHHHHhhhcCCeEEEEcCChHHHHHHHHHHhCCCeEe------------------eeHHHH
Q 012165          181 IGGY--LPGVHYIRDVADADALISSLEKAKKVVVVGGGYIGMEVAAAAVGWKLDTT------------------RYEQLY  240 (469)
Q Consensus       181 ~g~~--~~~v~~~~~~~~~~~~~~~~~~~~~vvVvG~G~~g~e~A~~l~~~g~~v~------------------~~~~~l  240 (469)
                      ||..  .++...+    +...+......+++++|||+|++|+|+|..|.++|.+|+                  .+.+.+
T Consensus       174 pg~~~~~~~~~~~----~~~~~~~~~~~~~~vvViGgG~~g~E~A~~l~~~g~~Vtlv~~~~~~l~~~d~~~~~~l~~~l  249 (491)
T 3urh_A          174 PGVEVAFDEKTIV----SSTGALALEKVPASMIVVGGGVIGLELGSVWARLGAKVTVVEFLDTILGGMDGEVAKQLQRML  249 (491)
T ss_dssp             TTBCCCCCSSSEE----CHHHHTSCSSCCSEEEEECCSHHHHHHHHHHHHHTCEEEEECSSSSSSSSSCHHHHHHHHHHH
T ss_pred             CCcccccCCeeEE----ehhHhhhhhhcCCeEEEECCCHHHHHHHHHHHHcCCEEEEEeccccccccCCHHHHHHHHHHH
Confidence            3322  2222222    233333334568999999999999999999999999987                  356778


Q ss_pred             HHcCcEEEcCCeEEEEEeCCCCcEEEEEcCC---C--CEEeCCEEEEccCCccCCch--hhhcCCccc-CCCEEeCCCCC
Q 012165          241 QQNGVKFVKGASIKNLEAGSDGRVAAVKLED---G--STIDADTIVIGIGAKPTVSP--FERVGLNSS-VGGIQVDGQFR  312 (469)
Q Consensus       241 ~~~gV~~~~~~~v~~i~~~~~~~v~~v~~~~---g--~~i~~D~vi~a~G~~p~~~~--~~~~gl~~~-~g~i~Vd~~~~  312 (469)
                      ++.||++++++++++++.++++ + .+.+.+   |  +++++|.||+|+|++|++++  ++..++..+ +|+|.||+++|
T Consensus       250 ~~~gV~v~~~~~v~~i~~~~~~-~-~v~~~~~~~g~~~~i~~D~Vi~a~G~~p~~~~l~l~~~g~~~~~~G~i~vd~~~~  327 (491)
T 3urh_A          250 TKQGIDFKLGAKVTGAVKSGDG-A-KVTFEPVKGGEATTLDAEVVLIATGRKPSTDGLGLAKAGVVLDSRGRVEIDRHFQ  327 (491)
T ss_dssp             HHTTCEEECSEEEEEEEEETTE-E-EEEEEETTSCCCEEEEESEEEECCCCEECCTTSCHHHHTCCBCTTSCBCCCTTCB
T ss_pred             HhCCCEEEECCeEEEEEEeCCE-E-EEEEEecCCCceEEEEcCEEEEeeCCccCCCccCchhcCceECCCCCEeECCCCC
Confidence            8999999999999999865333 2 355542   5  57999999999999999987  788888876 57799999999


Q ss_pred             CCCCceEEeccccccCCccCCcccccchHHHHHHHHHHHHHHHhcCCC-CCCCCCCceeeecccccCCCcceeeEEeecC
Q 012165          313 TRMPGIFAIGDVAAFPLKMYDRTARVEHVDHARQSAQHCIKALLSAQT-HTYDYLPYFYSRVFEYEGSPRKVWWQFFGDN  391 (469)
Q Consensus       313 t~~~~Vfa~GD~a~~~~~~~~~~~~~~~~~~A~~~a~~~a~~i~~~~~-~~~~~~p~~~~~~~~~~g~~~~~~~~~~G~~  391 (469)
                      |+.|+|||+|||+..+.          .+..|..+|+.+|++|++... ..+..+|+  .. |..+.      +..+|.+
T Consensus       328 t~~~~IyA~GD~~~~~~----------~~~~A~~~g~~aa~~i~g~~~~~~~~~~p~--~~-~~~p~------~a~vGlt  388 (491)
T 3urh_A          328 TSIAGVYAIGDVVRGPM----------LAHKAEDEGVAVAEIIAGQAGHVNYDVIPG--VV-YTQPE------VASVGKT  388 (491)
T ss_dssp             CSSTTEEECGGGSSSCC----------CHHHHHHHHHHHHHHHTTSCCCCCTTCCCE--EE-CSSSC------EEEEECC
T ss_pred             CCCCCEEEEEecCCCcc----------chhHHHHHHHHHHHHHcCCCcccCCCCCCE--EE-EccCC------eEEEeCC
Confidence            99999999999996542          455699999999999997432 23455664  22 33221      5556654


Q ss_pred             CC-------cEEE-Ec-----------cCCCcEEEEEEe--CCEEEEEEeecCChHHhHH-HHHHHhCCCCCCh--hhhc
Q 012165          392 VG-------ETIE-IG-----------NFDPKIATFWID--SGKLKGVLVESGSPEEFQL-LPTLARSQPFVDK--AKLQ  447 (469)
Q Consensus       392 ~~-------~~~~-~~-----------~~~~~~~~~~~~--~~~l~g~~~~~~~~~~~~~-~~~~~~~~~~~~~--~~~~  447 (469)
                      +.       +... .-           .....+.|+.++  +++|+|+++++.++.++.. +..+|+.+.+++.  ..+.
T Consensus       389 e~~a~~~g~~~~~~~~~~~~~~~~~~~~~~~g~~k~i~~~~~~~ilG~~~~g~~a~e~i~~~~~ai~~~~t~~~l~~~~~  468 (491)
T 3urh_A          389 EEELKAAGVAYKIGKFPFTANGRARAMLQTDGFVKILADKETDRVLGGHIIGFGAGEMIHEIAVLMEFGGSSEDLGRTCH  468 (491)
T ss_dssp             HHHHHHTTCCEEEEEEEGGGCHHHHHTTCCCCEEEEEEETTTCBEEEEEEESTTHHHHHHHHHHHHHTTCBHHHHHTSCC
T ss_pred             HHHHHhCCCCEEEEEEecCcchhhhcCCCCcEEEEEEEECCCCEEEEEEEECCCHHHHHHHHHHHHHCCCcHHHHhcCcc
Confidence            32       1111 10           011347777775  5999999998887766554 4556788887763  2247


Q ss_pred             CCCcHHHHHHHHHhcCCcc
Q 012165          448 QASSVEEALEIARAALPVE  466 (469)
Q Consensus       448 ~~~~~~~~~~~~~~~~~~~  466 (469)
                      .||++.|++++|+.++..+
T Consensus       469 ~hPt~~e~~~~~~~~~~~~  487 (491)
T 3urh_A          469 AHPTMSEAVKEAALSTFFK  487 (491)
T ss_dssp             CSSCTTHHHHHHHHHHHC-
T ss_pred             CCCChHHHHHHHHHHhhhc
Confidence            7899999999999876544

>2wpf_A Trypanothione reductase; oxidoreductase, trypanosomiasis, sleeping sickness, flavoPro redox-active center; HET: FAD WPF; 1.90A {Trypanosoma brucei} PDB: 2wov_A* 2wow_A* 2wp5_A* 2wp6_A* 2wpc_A* 2wpe_A* 2woi_A* 2wba_A* 1nda_A* 1gxf_A* 1bzl_A* 1aog_A*

Probab=100.00  E-value=1.2e-40  Score=341.40  Aligned_cols=299  Identities=20%  Similarity=0.302  Sum_probs=220.9

Q ss_pred             HHHC-CcEEEeCCcEEEEeCCCcEEEeC---C-----CeEEEeccEEeccCCCCCcCCCCCCCCcCcEEEecCHHHHHHH
Q 012165          130 YKEK-GIEMIYQDPVTSIDIEKQTLITN---S-----GKLLKYGSLIVATGCTASRFPEKIGGYLPGVHYIRDVADADAL  200 (469)
Q Consensus       130 ~~~~-~i~~~~~~~v~~id~~~~~v~~~---~-----g~~~~yd~lVlAtG~~~~~~~~~~g~~~~~v~~~~~~~~~~~~  200 (469)
                      +++. +++++.+ ++..++.  ++|.+.   +     ++++.||+||||||++|+ .|.++|.  +.+.+      .+.+
T Consensus       117 l~~~~gv~~~~g-~~~~i~~--~~v~v~~~~~~~~~~~~~~~~d~lViATGs~p~-~p~i~G~--~~~~~------~~~~  184 (495)
T 2wpf_A          117 FNDTEGLDFFLG-WGSLESK--NVVVVRETADPKSAVKERLQADHILLATGSWPQ-MPAIPGI--EHCIS------SNEA  184 (495)
T ss_dssp             HHHCTTEEEEES-EEEEEET--TEEEEESSSSTTSCEEEEEEEEEEEECCCEEEC-CCCCTTG--GGCEE------HHHH
T ss_pred             HhcCCCeEEEEe-EEEEeeC--CEEEEeecCCccCCCCeEEEcCEEEEeCCCCcC-CCCCCCc--ccccc------HHHH
Confidence            4567 9999987 5777764  567775   4     678999999999999987 4555553  22222      2333


Q ss_pred             HHhhhcCCeEEEEcCChHHHHHHHHHHhC---CCeEe------------------eeHHHHHHcCcEEEcCCeEEEEEeC
Q 012165          201 ISSLEKAKKVVVVGGGYIGMEVAAAAVGW---KLDTT------------------RYEQLYQQNGVKFVKGASIKNLEAG  259 (469)
Q Consensus       201 ~~~~~~~~~vvVvG~G~~g~e~A~~l~~~---g~~v~------------------~~~~~l~~~gV~~~~~~~v~~i~~~  259 (469)
                      ......+++++|||+|++|+|+|..|.++   |.+|+                  .+.+.+++.||++++++.|++++.+
T Consensus       185 ~~~~~~~~~vvViGgG~ig~E~A~~l~~~~~~g~~Vtlv~~~~~~l~~~d~~~~~~l~~~l~~~GV~i~~~~~v~~i~~~  264 (495)
T 2wpf_A          185 FYLPEPPRRVLTVGGGFISVEFAGIFNAYKPPGGKVTLCYRNNLILRGFDETIREEVTKQLTANGIEIMTNENPAKVSLN  264 (495)
T ss_dssp             TTCSSCCSEEEEECSSHHHHHHHHHHHHHCCTTCEEEEEESSSSSCTTSCHHHHHHHHHHHHHTTCEEEESCCEEEEEEC
T ss_pred             HhhhhcCCeEEEECCCHHHHHHHHHHHhhCCCCCeEEEEEcCCccccccCHHHHHHHHHHHHhCCCEEEeCCEEEEEEEc
Confidence            33334579999999999999999999999   99987                  3467788999999999999999865


Q ss_pred             CCCcEEEEEcCCCCEEeCCEEEEccCCccCCch--hhhcCCccc-CCCEEeCCCCCCCCCceEEeccccccCCccCCccc
Q 012165          260 SDGRVAAVKLEDGSTIDADTIVIGIGAKPTVSP--FERVGLNSS-VGGIQVDGQFRTRMPGIFAIGDVAAFPLKMYDRTA  336 (469)
Q Consensus       260 ~~~~v~~v~~~~g~~i~~D~vi~a~G~~p~~~~--~~~~gl~~~-~g~i~Vd~~~~t~~~~Vfa~GD~a~~~~~~~~~~~  336 (469)
                      +++. ..+.+++|+++++|.||+|+|++||+++  ++++|++.+ +|+|.||+++||++|+|||+|||+..+.       
T Consensus       265 ~~~~-~~v~~~~G~~i~~D~vv~a~G~~p~~~~L~l~~~gl~~~~~G~i~Vd~~~~t~~~~IyA~GD~~~~~~-------  336 (495)
T 2wpf_A          265 TDGS-KHVTFESGKTLDVDVVMMAIGRIPRTNDLQLGNVGVKLTPKGGVQVDEFSRTNVPNIYAIGDITDRLM-------  336 (495)
T ss_dssp             TTSC-EEEEETTSCEEEESEEEECSCEEECCGGGTGGGTTCCBCTTSSBCCCTTCBCSSTTEEECGGGGCSCC-------
T ss_pred             CCce-EEEEECCCcEEEcCEEEECCCCcccccccchhhcCccCCCCCCEEECCCCccCCCCEEEEeccCCCcc-------
Confidence            3333 3678889999999999999999999984  688898876 6789999999999999999999996432       


Q ss_pred             ccchHHHHHHHHHHHHHHHhcCCC--CCCCCCCceeeecccccCCCcceeeEEeecCCCc-------EEE-E--------
Q 012165          337 RVEHVDHARQSAQHCIKALLSAQT--HTYDYLPYFYSRVFEYEGSPRKVWWQFFGDNVGE-------TIE-I--------  398 (469)
Q Consensus       337 ~~~~~~~A~~~a~~~a~~i~~~~~--~~~~~~p~~~~~~~~~~g~~~~~~~~~~G~~~~~-------~~~-~--------  398 (469)
                         .+..|..||+.+|.+|++...  ..|..+|+   ..|..+.      +..+|....+       ... .        
T Consensus       337 ---l~~~A~~~g~~aa~~i~g~~~~~~~~~~~p~---~~~~~~~------~a~vGl~e~~a~~~~~~~~v~~~~~~~~~~  404 (495)
T 2wpf_A          337 ---LTPVAINEGAALVDTVFGNKPRKTDHTRVAS---AVFSIPP------IGTCGLIEEVAAKEFEKVAVYMSSFTPLMH  404 (495)
T ss_dssp             ---CHHHHHHHHHHHHHHHHSSCCCCCCCSSCEE---EECCSSC------EEEEECCHHHHHHHSSEEEEEEEEECCTHH
T ss_pred             ---CHHHHHHHHHHHHHHhcCCCCCcCCCCCCCE---EEECCCC------eEEEeCCHHHHHhcCCCEEEEEEecCchhh
Confidence               456799999999999997443  23555553   2232221      5556654321       111 1        


Q ss_pred             ---ccCCCcE-EEEEEe--CCEEEEEEeecCChHHhHH-HHHHHhCCCCCCh--hhhcCCCcHHHHHHHHH
Q 012165          399 ---GNFDPKI-ATFWID--SGKLKGVLVESGSPEEFQL-LPTLARSQPFVDK--AKLQQASSVEEALEIAR  460 (469)
Q Consensus       399 ---~~~~~~~-~~~~~~--~~~l~g~~~~~~~~~~~~~-~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~  460 (469)
                         +.....| .|++++  +++|+|+++++.++.++.. +..+|+.+.+++.  ..++.||++.|+++.++
T Consensus       405 ~~~~~~~~~~~~klv~~~~~~~ilG~~~~g~~a~~~i~~~~~ai~~~~t~~~l~~~~~~hPt~~e~~~~~~  475 (495)
T 2wpf_A          405 NISGSKYKKFVAKIVTNHSDGTVLGVHLLGDGAPEIIQAVGVCLRLNAKISDFYNTIGVHPTSAEELCSMR  475 (495)
T ss_dssp             HHHSCTTCCEEEEEEEETTTCBEEEEEEESTTHHHHHHHHHHHHHTTCBHHHHHHSCCCSSCSGGGGGSCC
T ss_pred             hhhcCCCcEEEEEEEEECCCCEEEEEEEECCCHHHHHHHHHHHHHCCCCHHHHhhcccCCCChHHHHHHHH
Confidence               1112347 888886  6999999997777765444 5556788887762  33578999999988765

>1onf_A GR, grase, glutathione reductase; oxidoreductase; HET: FAD; 2.60A {Plasmodium falciparum} SCOP: c.3.1.5 c.3.1.5 d.87.1.1

Probab=100.00  E-value=3.5e-40  Score=338.70  Aligned_cols=384  Identities=17%  Similarity=0.233  Sum_probs=245.3

Q ss_pred             CCcEEEEcCcHHHHHHHHHHHHcCCCCCcEEEEcCCCCCCC--CCCCCc-ccc---------c-----CCCCC-CCCCCC
Q 012165           51 NREFVIVGGGNAAGYAARTFVEHGMADGRLCIVSKEAYAPY--ERPALT-KGY---------L-----FPLDK-KPARLP  112 (469)
Q Consensus        51 ~~~vvIIGgG~AGl~aA~~L~~~g~~~~~V~vie~~~~~~~--~~~~l~-~~~---------~-----~~~~~-~~~~~~  112 (469)
                      ++||+|||||+||+++|.+|++.|.   +|+|||+++..+-  .+...+ +.+         +     +.... ...+++
T Consensus         2 ~~dVvIIGgG~aGl~aA~~l~~~g~---~V~liE~~~~GG~c~~~gc~P~k~l~~~a~~~~~~~~~~~~g~~~~~~~~~~   78 (500)
T 1onf_A            2 VYDLIVIGGGSGGMAAARRAARHNA---KVALVEKSRLGGTCVNVGCVPKKIMFNAASVHDILENSRHYGFDTKFSFNLP   78 (500)
T ss_dssp             CBSEEEECCSHHHHHHHHHHHHTTC---CEEEEESSSTTHHHHHTSHHHHHHHHHHHHHHHHHHHGGGGTCCCCCCCCHH
T ss_pred             ccCEEEECCCHHHHHHHHHHHHCCC---cEEEEeCCCcCccccccCCcchHHHHHHHHHHHHHHhhHhcCCccCCccCHH
Confidence            4799999999999999999999987   7999999852100  000000 000         0     00000 000100


Q ss_pred             CCccccC---CCCCCCCHhHHHHCCcEEEeCCcEEEEeCCCcEEEeCC-------------CeEEEeccEEeccCCCCCc
Q 012165          113 GFHTCVG---SGGERQTPEWYKEKGIEMIYQDPVTSIDIEKQTLITNS-------------GKLLKYGSLIVATGCTASR  176 (469)
Q Consensus       113 ~~~~~~~---~~~~~~~~~~~~~~~i~~~~~~~v~~id~~~~~v~~~~-------------g~~~~yd~lVlAtG~~~~~  176 (469)
                      .+.....   .........++++.+++++.+. +..++.  +++++.+             +.++.||+||||||++|. 
T Consensus        79 ~~~~~~~~~~~~~~~~~~~~~~~~gv~~~~g~-~~~id~--~~v~v~~~~~~~~~~~~~~~~~~~~~d~lViAtGs~p~-  154 (500)
T 1onf_A           79 LLVERRDKYIQRLNNIYRQNLSKDKVDLYEGT-ASFLSE--NRILIKGTKDNNNKDNGPLNEEILEGRNILIAVGNKPV-  154 (500)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHTTCEEEESC-CCCC----------------------------CBSSEEECCCCCBC-
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHhCCCEEEEeE-EEEeeC--CEEEEEeccccccccccCCCceEEEeCEEEECCCCCCC-
Confidence            0000000   0000011234567899999874 444554  4455533             567999999999999987 


Q ss_pred             CCCCCCCCcCcEEEecCHHHHHHHHHhhhcCCeEEEEcCChHHHHHHHHHHhCCCeEe------------------eeHH
Q 012165          177 FPEKIGGYLPGVHYIRDVADADALISSLEKAKKVVVVGGGYIGMEVAAAAVGWKLDTT------------------RYEQ  238 (469)
Q Consensus       177 ~~~~~g~~~~~v~~~~~~~~~~~~~~~~~~~~~vvVvG~G~~g~e~A~~l~~~g~~v~------------------~~~~  238 (469)
                      .|.++|.  +.+.+      .+.+..... +++++|||+|++|+|+|..|+++|.+|+                  .+.+
T Consensus       155 ~p~i~G~--~~~~~------~~~~~~~~~-~~~vvViGgG~ig~E~A~~l~~~g~~Vtlv~~~~~~l~~~d~~~~~~l~~  225 (500)
T 1onf_A          155 FPPVKGI--ENTIS------SDEFFNIKE-SKKIGIVGSGYIAVELINVIKRLGIDSYIFARGNRILRKFDESVINVLEN  225 (500)
T ss_dssp             CCSCTTG--GGCEE------HHHHTTCCC-CSEEEEECCSHHHHHHHHHHHTTTCEEEEECSSSSSCTTSCHHHHHHHHH
T ss_pred             CCCCCCC--CcccC------HHHHhccCC-CCeEEEECChHHHHHHHHHHHHcCCeEEEEecCCccCcccchhhHHHHHH
Confidence            4555553  22222      223222222 8999999999999999999999999998                  4467


Q ss_pred             HHHHcCcEEEcCCeEEEEEeCCCCcEEEEEcCCCCE-EeCCEEEEccCCccCCc-h-hhhcCCcccCCCEEeCCCCCCCC
Q 012165          239 LYQQNGVKFVKGASIKNLEAGSDGRVAAVKLEDGST-IDADTIVIGIGAKPTVS-P-FERVGLNSSVGGIQVDGQFRTRM  315 (469)
Q Consensus       239 ~l~~~gV~~~~~~~v~~i~~~~~~~v~~v~~~~g~~-i~~D~vi~a~G~~p~~~-~-~~~~gl~~~~g~i~Vd~~~~t~~  315 (469)
                      .+++.||++++++.+++++.++++.+ .+.+++|++ +++|.||+|+|++|+++ + ++++|++.++|+|.||+++||++
T Consensus       226 ~l~~~gv~i~~~~~v~~i~~~~~~~~-~v~~~~g~~~~~~D~vi~a~G~~p~~~~l~~~~~g~~~~~G~i~vd~~~~t~~  304 (500)
T 1onf_A          226 DMKKNNINIVTFADVVEIKKVSDKNL-SIHLSDGRIYEHFDHVIYCVGRSPDTENLKLEKLNVETNNNYIVVDENQRTSV  304 (500)
T ss_dssp             HHHHTTCEEECSCCEEEEEESSTTCE-EEEETTSCEEEEESEEEECCCBCCTTTTSSCTTTTCCBSSSCEEECTTCBCSS
T ss_pred             HHHhCCCEEEECCEEEEEEEcCCceE-EEEECCCcEEEECCEEEECCCCCcCCCCCCchhcCccccCCEEEECCCcccCC
Confidence            78899999999999999986544433 578889988 99999999999999986 4 68888887667899999999999


Q ss_pred             CceEEeccccccCCcc-----------------------CC-cccccchHHHHHHHHHHHHHHHhcCCC--CCCCCCCce
Q 012165          316 PGIFAIGDVAAFPLKM-----------------------YD-RTARVEHVDHARQSAQHCIKALLSAQT--HTYDYLPYF  369 (469)
Q Consensus       316 ~~Vfa~GD~a~~~~~~-----------------------~~-~~~~~~~~~~A~~~a~~~a~~i~~~~~--~~~~~~p~~  369 (469)
                      |+|||+|||+..+...                       .+ .......+..|..||+.+|+||+++..  ..|..+|+.
T Consensus       305 ~~iya~GD~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~g~~aa~~i~g~~~~~~~~~~~p~~  384 (500)
T 1onf_A          305 NNIYAVGDCCMVKKSKEIEDLNLLKLYNEERYLNKKENVTEDIFYNVQLTPVAINAGRLLADRLFLKKTRKTNYKLIPTV  384 (500)
T ss_dssp             SSEEECSTTEEEC------------------------------CBCCCCHHHHHHHHHHHHHHHHSCTTCCCCCSSCCEE
T ss_pred             CCEEEEeccccccccccccccccccccccccccccccccccccCCcccchhHHHHHHHHHHHHHhCCCCccCCCCCCCeE
Confidence            9999999999432100                       00 001244677899999999999997543  235556642


Q ss_pred             eeecccccCCCcceeeEEeecCCC---------cEEE----------------EccCCCcEEEEEEe--CCEEEEEEeec
Q 012165          370 YSRVFEYEGSPRKVWWQFFGDNVG---------ETIE----------------IGNFDPKIATFWID--SGKLKGVLVES  422 (469)
Q Consensus       370 ~~~~~~~~g~~~~~~~~~~G~~~~---------~~~~----------------~~~~~~~~~~~~~~--~~~l~g~~~~~  422 (469)
                         .|..+.      +..+|....         +...                .......|.|+.++  +++|+|+++++
T Consensus       385 ---~~~~~~------~a~vGl~e~~a~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~kli~~~~~~~ilG~~~~g  455 (500)
T 1onf_A          385 ---IFSHPP------IGTIGLSEEAAIQIYGKENVKIYESKFTNLFFSVYDIEPELKEKTYLKLVCVGKDELIKGLHIIG  455 (500)
T ss_dssp             ---ECCSSC------EEEEECCHHHHHHHTCGGGEEEEEEEECCGGGTTSCSCGGGSCCEEEEEEEETTTTEEEEEEEES
T ss_pred             ---EEcCcc------eEEEeCCHHHHHhcCCCccEEEEEEECchhhhhhccccccCCCceEEEEEEECCCCEEEEEEEEC
Confidence               232111      444554311         1111                01112347788774  69999999877


Q ss_pred             CChHHhHHH-HHHHhCCCCCCh--hhhcCCCcHHHHHHHHH
Q 012165          423 GSPEEFQLL-PTLARSQPFVDK--AKLQQASSVEEALEIAR  460 (469)
Q Consensus       423 ~~~~~~~~~-~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~  460 (469)
                      .++.++... ..+++.+.+++.  ..+..||++.|++..++
T Consensus       456 ~~a~~~i~~~~~ai~~~~t~~~l~~~~~~~Pt~~e~~~~~~  496 (500)
T 1onf_A          456 LNADEIVQGFAVALKMNATKKDFDETIPIHPTAAEEFLTLQ  496 (500)
T ss_dssp             TTHHHHHHHHHHHHHTTCBHHHHHTSCCCTTCSTTHHHHCC
T ss_pred             CCHHHHHHHHHHHHHcCCCHHHHhccccCCCCHHHHHHHhc
Confidence            767665544 455788877662  23578999999998764

>1fec_A Trypanothione reductase; redox-active center, oxidoreductase, flavoprotein, FAD, NADP; HET: FAD; 1.70A {Crithidia fasciculata} SCOP: c.3.1.5 c.3.1.5 d.87.1.1 PDB: 1fea_A* 1feb_A* 2tpr_A* 1tyt_A* 1typ_A* 2jk6_A* 2w0h_A* 2yau_A* 2x50_A* 2ve2_A*

Probab=100.00  E-value=1.9e-40  Score=339.66  Aligned_cols=376  Identities=18%  Similarity=0.232  Sum_probs=254.5

Q ss_pred             CCCcEEEEcCcHHHHHHHHHHHH-cCCCCCcEEEEcC--------CCCCCCCC---CCCc-cccc--------------C
Q 012165           50 ENREFVIVGGGNAAGYAARTFVE-HGMADGRLCIVSK--------EAYAPYER---PALT-KGYL--------------F  102 (469)
Q Consensus        50 ~~~~vvIIGgG~AGl~aA~~L~~-~g~~~~~V~vie~--------~~~~~~~~---~~l~-~~~~--------------~  102 (469)
                      .++||+|||||+||+++|.+|++ .|.   +|+|||+        ...++...   -..+ +.++              +
T Consensus         2 ~~~dvvVIGgG~aGl~aA~~la~~~G~---~V~liE~~~~~~~~~~~~~GG~c~~~gciPsk~l~~~a~~~~~~~~~~~~   78 (490)
T 1fec_A            2 RAYDLVVIGAGSGGLEAGWNAASLHKK---RVAVIDLQKHHGPPHYAALGGTCVNVGCVPKKLMVTGANYMDTIRESAGF   78 (490)
T ss_dssp             CSEEEEEECCSHHHHHHHHHHHHHHCC---CEEEEESCSSSBTTTBSCTTCHHHHHSHHHHHHHHHHHHHHHHHHHGGGG
T ss_pred             ccccEEEECCCHHHHHHHHHHHHHcCC---EEEEEecccccccccCCCcCccccCCCcchhhHHHHHHHHHHHHHHHHhc
Confidence            35899999999999999999999 887   7999993        22111100   0000 0000              0


Q ss_pred             CCCC--C--CCCCCCCccccC---CCCCCCCHhHHHHC-CcEEEeCCcEEEEeCCCcEEEeC-----CC---eEEEeccE
Q 012165          103 PLDK--K--PARLPGFHTCVG---SGGERQTPEWYKEK-GIEMIYQDPVTSIDIEKQTLITN-----SG---KLLKYGSL  166 (469)
Q Consensus       103 ~~~~--~--~~~~~~~~~~~~---~~~~~~~~~~~~~~-~i~~~~~~~v~~id~~~~~v~~~-----~g---~~~~yd~l  166 (469)
                      ....  .  ..++..+.....   ..........+++. +++++.+ ++..++.  +++.+.     +|   .++.||+|
T Consensus        79 g~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~l~~~~gv~~~~g-~~~~i~~--~~v~v~~~~~~~g~~~~~~~~d~l  155 (490)
T 1fec_A           79 GWELDRESVRPNWKALIAAKNKAVSGINDSYEGMFADTEGLTFHQG-FGALQDN--HTVLVRESADPNSAVLETLDTEYI  155 (490)
T ss_dssp             TEECCGGGCEECHHHHHHHHHHHHHHHHHHHHHHHHTSTTEEEEES-EEEEEET--TEEEEESSSSTTSCEEEEEEEEEE
T ss_pred             CcccCCcccccCHHHHHHHHHHHHHHHHHHHHHHHhcCCCcEEEEe-EEEEeeC--CEEEEEeeccCCCCceEEEEcCEE
Confidence            0000  0  000000000000   00000012234567 9999987 5777875  455553     66   67999999


Q ss_pred             EeccCCCCCcCCCCCCCCcCcEEEecCHHHHHHHHHhhhcCCeEEEEcCChHHHHHHHHHHhC---CCeEe---------
Q 012165          167 IVATGCTASRFPEKIGGYLPGVHYIRDVADADALISSLEKAKKVVVVGGGYIGMEVAAAAVGW---KLDTT---------  234 (469)
Q Consensus       167 VlAtG~~~~~~~~~~g~~~~~v~~~~~~~~~~~~~~~~~~~~~vvVvG~G~~g~e~A~~l~~~---g~~v~---------  234 (469)
                      |||||++|. .|.++|.  +.   +.+   .+.+......+++++|||+|++|+|+|..|.++   |.+|+         
T Consensus       156 viAtGs~p~-~p~i~g~--~~---~~~---~~~~~~~~~~~~~vvViGgG~ig~E~A~~l~~~~~~g~~Vtlv~~~~~~l  226 (490)
T 1fec_A          156 LLATGSWPQ-HLGIEGD--DL---CIT---SNEAFYLDEAPKRALCVGGGYISIEFAGIFNAYKARGGQVDLAYRGDMIL  226 (490)
T ss_dssp             EECCCEEEC-CCCSBTG--GG---CBC---HHHHTTCSSCCSEEEEECSSHHHHHHHHHHHHHSCTTCEEEEEESSSSSS
T ss_pred             EEeCCCCCC-CCCCCCc--cc---eec---HHHHhhhhhcCCeEEEECCCHHHHHHHHHHHhhccCcCeEEEEEcCCCcc
Confidence            999999987 4555553  22   222   233333334579999999999999999999999   99987         


Q ss_pred             ---------eeHHHHHHcCcEEEcCCeEEEEEeCCCCcEEEEEcCCCCEEeCCEEEEccCCccCCc-h-hhhcCCccc-C
Q 012165          235 ---------RYEQLYQQNGVKFVKGASIKNLEAGSDGRVAAVKLEDGSTIDADTIVIGIGAKPTVS-P-FERVGLNSS-V  302 (469)
Q Consensus       235 ---------~~~~~l~~~gV~~~~~~~v~~i~~~~~~~v~~v~~~~g~~i~~D~vi~a~G~~p~~~-~-~~~~gl~~~-~  302 (469)
                               .+.+.+++.||++++++.+++++.++++.+ .+.+++|+++++|.||+|+|++|+++ + ++.+|++.+ +
T Consensus       227 ~~~d~~~~~~l~~~l~~~GV~i~~~~~v~~i~~~~~~~~-~v~~~~G~~i~~D~vv~a~G~~p~~~~L~l~~~gl~~~~~  305 (490)
T 1fec_A          227 RGFDSELRKQLTEQLRANGINVRTHENPAKVTKNADGTR-HVVFESGAEADYDVVMLAIGRVPRSQTLQLEKAGVEVAKN  305 (490)
T ss_dssp             TTSCHHHHHHHHHHHHHTTEEEEETCCEEEEEECTTSCE-EEEETTSCEEEESEEEECSCEEESCTTSCGGGGTCCBCTT
T ss_pred             cccCHHHHHHHHHHHHhCCCEEEeCCEEEEEEEcCCCEE-EEEECCCcEEEcCEEEEccCCCcCccccCchhcCccCCCC
Confidence                     356778899999999999999986543433 67888998999999999999999987 4 688899876 6


Q ss_pred             CCEEeCCCCCCCCCceEEeccccccCCccCCcccccchHHHHHHHHHHHHHHHhcCCC--CCCCCCCceeeecccccCCC
Q 012165          303 GGIQVDGQFRTRMPGIFAIGDVAAFPLKMYDRTARVEHVDHARQSAQHCIKALLSAQT--HTYDYLPYFYSRVFEYEGSP  380 (469)
Q Consensus       303 g~i~Vd~~~~t~~~~Vfa~GD~a~~~~~~~~~~~~~~~~~~A~~~a~~~a~~i~~~~~--~~~~~~p~~~~~~~~~~g~~  380 (469)
                      |+|.||+++||++|+|||+|||+..+          ..+..|..+|+.+|.+|++...  ..|..+|+   ..|..+.  
T Consensus       306 G~I~Vd~~~~t~~~~IyA~GD~~~~~----------~l~~~A~~~g~~aa~~i~g~~~~~~~~~~~p~---~~~~~~~--  370 (490)
T 1fec_A          306 GAIKVDAYSKTNVDNIYAIGDVTDRV----------MLTPVAINEGAAFVDTVFANKPRATDHTKVAC---AVFSIPP--  370 (490)
T ss_dssp             SCBCCCTTCBCSSTTEEECGGGGCSC----------CCHHHHHHHHHHHHHHHHSSCCCCCCCSSCCE---EECCSSC--
T ss_pred             CCEEECCCCccCCCCEEEEeccCCCc----------cCHHHHHHHHHHHHHHhcCCCCCcCCCCCccE---EEECCCC--
Confidence            78999999999999999999999642          2456799999999999997433  34555664   2232221  


Q ss_pred             cceeeEEeecCCCc-------EEE-E-----------ccCCCcEE-EEEEe--CCEEEEEEeecCChHHhH-HHHHHHhC
Q 012165          381 RKVWWQFFGDNVGE-------TIE-I-----------GNFDPKIA-TFWID--SGKLKGVLVESGSPEEFQ-LLPTLARS  437 (469)
Q Consensus       381 ~~~~~~~~G~~~~~-------~~~-~-----------~~~~~~~~-~~~~~--~~~l~g~~~~~~~~~~~~-~~~~~~~~  437 (469)
                          +..+|....+       ... .           ......|. |++++  +++|+|+++++.++.++. .+..+|+.
T Consensus       371 ----~a~vG~~e~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~kli~~~~~~~ilG~~~~g~~a~~~i~~~~~ai~~  446 (490)
T 1fec_A          371 ----MGVCGYVEEDAAKKYDQVAVYESSFTPLMHNISGSTYKKFMVRIVTNHADGEVLGVHMLGDSSPEIIQSVAICLKM  446 (490)
T ss_dssp             ----EEEEECCHHHHHHHCSEEEEEEEEECCHHHHHHSCTTCCEEEEEEEETTTTEEEEEEEESTTHHHHHHHHHHHHHT
T ss_pred             ----eEEEeCCHHHHHhcCCCEEEEEeecChhhhhhhcCCCeEEEEEEEEECCCCEEEEEEEECCCHHHHHHHHHHHHHc
Confidence                5566654321       111 1           11123477 88886  699999999777776644 45556788


Q ss_pred             CCCCCh--hhhcCCCcHHHHHHHHH
Q 012165          438 QPFVDK--AKLQQASSVEEALEIAR  460 (469)
Q Consensus       438 ~~~~~~--~~~~~~~~~~~~~~~~~  460 (469)
                      +.+++.  ..++.||++.|+++.++
T Consensus       447 ~~t~~~l~~~~~~hPt~~e~~~~~~  471 (490)
T 1fec_A          447 GAKISDFYNTIGVHPTSAEELCSMR  471 (490)
T ss_dssp             TCBHHHHHTSCCCSSCSGGGGGSCC
T ss_pred             CCCHHHHhccccCCCCHHHHHHHHH
Confidence            887662  23578999999998765

>3l8k_A Dihydrolipoyl dehydrogenase; redox-active center, structural genomics, PSI-2, protein structure initiative; HET: ADP; 2.50A {Sulfolobus solfataricus}

Probab=100.00  E-value=7.1e-40  Score=333.77  Aligned_cols=383  Identities=16%  Similarity=0.183  Sum_probs=258.5

Q ss_pred             CCcEEEEcCcHHHHHHHHHHHHcCCCCCcEEEEcCCCCCCCCC---CCC-ccccc-----------CCCCCCCCCCCCCc
Q 012165           51 NREFVIVGGGNAAGYAARTFVEHGMADGRLCIVSKEAYAPYER---PAL-TKGYL-----------FPLDKKPARLPGFH  115 (469)
Q Consensus        51 ~~~vvIIGgG~AGl~aA~~L~~~g~~~~~V~vie~~~~~~~~~---~~l-~~~~~-----------~~~~~~~~~~~~~~  115 (469)
                      ++||+|||||+||+++|..|++.|.   +|+|||+.+.++..-   ... ++.++           ........+++.+.
T Consensus         4 ~~DVvVIGgG~aGl~aA~~l~~~G~---~V~liEk~~~~GG~~~~~gciPsk~l~~~a~~~~~~~~~~~~~~~~~~~~~~   80 (466)
T 3l8k_A            4 KYDVVVIGAGGAGYHGAFRLAKAKY---NVLMADPKGELGGNCLYSGCVPSKTVREVIQTAWRLTNIANVKIPLDFSTVQ   80 (466)
T ss_dssp             EEEEEEECCSHHHHHHHHHHHHTTC---CEEEECTTSSSSHHHHHHSHHHHHHHHHHHHHHHHHHHHHCSCCCCCHHHHH
T ss_pred             cceEEEECCCHHHHHHHHHHHhCCC---eEEEEECCCCCCCcccccCCCchHHHHHHHHHHHHHHhcccCCCCcCHHHHH
Confidence            4899999999999999999999987   799999776543110   000 00000           00000000110000


Q ss_pred             cccCC--CCC--CCCHhHHHHCCcEEEeCCcEEEEeCCCcEEEeCCCeE--EEeccEEeccCCCCCcCCCCCCCCcCcEE
Q 012165          116 TCVGS--GGE--RQTPEWYKEKGIEMIYQDPVTSIDIEKQTLITNSGKL--LKYGSLIVATGCTASRFPEKIGGYLPGVH  189 (469)
Q Consensus       116 ~~~~~--~~~--~~~~~~~~~~~i~~~~~~~v~~id~~~~~v~~~~g~~--~~yd~lVlAtG~~~~~~~~~~g~~~~~v~  189 (469)
                      .....  ...  .....++++.+++++.+ ++..++.....|.+.+|++  +.||+||||||+.|. .|.++|.+  +  
T Consensus        81 ~~~~~~~~l~~~~~~~~~~~~~~v~~~~g-~v~~id~~~~~V~~~~g~~~~~~~d~lviAtG~~p~-~p~i~G~~--~--  154 (466)
T 3l8k_A           81 DRKDYVQELRFKQHKRNMSQYETLTFYKG-YVKIKDPTHVIVKTDEGKEIEAETRYMIIASGAETA-KLRLPGVE--Y--  154 (466)
T ss_dssp             HHHHHHHHHHHHHHHHHHTTCTTEEEESE-EEEEEETTEEEEEETTSCEEEEEEEEEEECCCEEEC-CCCCTTGG--G--
T ss_pred             HHHHhheeccccchHHHHHHhCCCEEEEe-EEEEecCCeEEEEcCCCcEEEEecCEEEECCCCCcc-CCCCCCcc--c--
Confidence            00000  000  01122334568999886 8889998878888888888  999999999999987 45555533  3  


Q ss_pred             EecCHHHHHHHH-HhhhcCCeEEEEcCChHHHHHHHHHHhCCCeEe-----------e----eHHHH-HHcCcEEEcCCe
Q 012165          190 YIRDVADADALI-SSLEKAKKVVVVGGGYIGMEVAAAAVGWKLDTT-----------R----YEQLY-QQNGVKFVKGAS  252 (469)
Q Consensus       190 ~~~~~~~~~~~~-~~~~~~~~vvVvG~G~~g~e~A~~l~~~g~~v~-----------~----~~~~l-~~~gV~~~~~~~  252 (469)
                       +.+..+...+. .....+++++|||+|++|+|+|..|.++|.+|+           .    +.+.+ +...|++++++.
T Consensus       155 -~~t~~~~~~~~~~l~~~~~~vvViGgG~~g~e~A~~l~~~g~~Vtlv~~~~~~l~~~~d~~~~~~l~~~l~v~i~~~~~  233 (466)
T 3l8k_A          155 -CLTSDDIFGYKTSFRKLPQDMVIIGAGYIGLEIASIFRLMGVQTHIIEMLDRALITLEDQDIVNTLLSILKLNIKFNSP  233 (466)
T ss_dssp             -SBCHHHHHSTTCSCCSCCSEEEEECCSHHHHHHHHHHHHTTCEEEEECSSSSSCTTSCCHHHHHHHHHHHCCCEECSCC
T ss_pred             -eEeHHHHHHHHHHHhhCCCeEEEECCCHHHHHHHHHHHHcCCEEEEEEeCCcCCCCCCCHHHHHHHHhcCEEEEEECCE
Confidence             33333333111 222357899999999999999999999999988           1    11122 223499999999


Q ss_pred             EEEEEeCCCCcEEEEEcC--CCC--EEeCCEEEEccCCccCCch-hhhcCCcccCCCEEeCCCCCCCCCceEEecccccc
Q 012165          253 IKNLEAGSDGRVAAVKLE--DGS--TIDADTIVIGIGAKPTVSP-FERVGLNSSVGGIQVDGQFRTRMPGIFAIGDVAAF  327 (469)
Q Consensus       253 v~~i~~~~~~~v~~v~~~--~g~--~i~~D~vi~a~G~~p~~~~-~~~~gl~~~~g~i~Vd~~~~t~~~~Vfa~GD~a~~  327 (469)
                      +++++..+++.+ .+.++  +|+  ++++|.||+|+|++|++++ ++++|++.+.++|.||+++||++|+|||+|||+..
T Consensus       234 v~~i~~~~~~~v-~v~~~~~~G~~~~i~~D~vi~a~G~~p~~~l~l~~~gl~~~~~Gi~vd~~~~t~~~~Iya~GD~~~~  312 (466)
T 3l8k_A          234 VTEVKKIKDDEY-EVIYSTKDGSKKSIFTNSVVLAAGRRPVIPEGAREIGLSISKTGIVVDETMKTNIPNVFATGDANGL  312 (466)
T ss_dssp             EEEEEEEETTEE-EEEECCTTSCCEEEEESCEEECCCEEECCCTTTGGGTCCBCSSSBCCCTTCBCSSTTEEECGGGTCS
T ss_pred             EEEEEEcCCCcE-EEEEEecCCceEEEEcCEEEECcCCCcccccchhhcCceeCCCCEeECCCccCCCCCEEEEEecCCC
Confidence            999986432444 46776  676  8999999999999999985 78889987643499999999999999999999986


Q ss_pred             CCccCCcccccchHHHHHHHHHHHHHHHhcC--CCC--CCCCCCceeeecccccCCCcceeeEEeecCCC-------cEE
Q 012165          328 PLKMYDRTARVEHVDHARQSAQHCIKALLSA--QTH--TYDYLPYFYSRVFEYEGSPRKVWWQFFGDNVG-------ETI  396 (469)
Q Consensus       328 ~~~~~~~~~~~~~~~~A~~~a~~~a~~i~~~--~~~--~~~~~p~~~~~~~~~~g~~~~~~~~~~G~~~~-------~~~  396 (469)
                      +.          .+..|..+|+.+|+||++.  ...  .+..+|+   ..|..+.      +..+|.+..       +..
T Consensus       313 ~~----------~~~~A~~~g~~aa~~i~~~~~~~~~~~~~~~p~---~~~~~~~------~a~vG~te~~a~~~g~~~~  373 (466)
T 3l8k_A          313 AP----------YYHAAVRMSIAAANNIMANGMPVDYVDVKSIPV---TIYTIPS------LSYVGILPSKARKMGIEIV  373 (466)
T ss_dssp             CC----------SHHHHHHHHHHHHHHHHTTTSCCCCCCSTTSCE---EECSSSC------EEEEECCHHHHHHHTCCEE
T ss_pred             Cc----------cHhHHHHHHHHHHHHHhCCCCCccccCCCCCcE---EEECCCC------eEEecCCHHHHHhCCCCEE
Confidence            32          4556999999999999975  332  3445554   2343221      556665432       111


Q ss_pred             E-Ec-----------cCCCcEEEEEEe--CCEEEEEEeecCChHHhH-HHHHHHhCCCCCCh--hhhcCCCcHHHHHHHH
Q 012165          397 E-IG-----------NFDPKIATFWID--SGKLKGVLVESGSPEEFQ-LLPTLARSQPFVDK--AKLQQASSVEEALEIA  459 (469)
Q Consensus       397 ~-~~-----------~~~~~~~~~~~~--~~~l~g~~~~~~~~~~~~-~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~  459 (469)
                      . .-           .....+.|++++  +++|+|+++++.++.++. .+..+|+.+.+++.  ..+..||++.|+++.|
T Consensus       374 ~~~~~~~~~~~~~~~~~~~g~~k~i~~~~~~~ilG~~~~g~~a~e~i~~~~~ai~~~~t~~~l~~~~~~~Pt~~e~~~~~  453 (466)
T 3l8k_A          374 EAEYNMEEDVSAQIYGQKEGVLKLIFERGSMRLIGAWMIGVHSQYLINELGLAVAYGLNAKQLASFAEQHPSTNEIISYT  453 (466)
T ss_dssp             EEEEEGGGSHHHHHHTCCCCEEEEEEETTTCBEEEEEEESTTHHHHHHHHHHHHHTTCBHHHHHHCCCCTTSTTHHHHHH
T ss_pred             EEEEEcccChhheecCCCeEEEEEEEECCCCEEEEEEEECCCHHHHHHHHHHHHHCcCCHHHHhccccCCCChHHHHHHH
Confidence            1 10           012347787775  499999999888776544 45556788887762  3357899999999999


Q ss_pred             HhcC
Q 012165          460 RAAL  463 (469)
Q Consensus       460 ~~~~  463 (469)
                      +.+.
T Consensus       454 ~~~~  457 (466)
T 3l8k_A          454 ARKV  457 (466)
T ss_dssp             HHHH
T ss_pred             HHHH
Confidence            8764

>1ges_A Glutathione reductase; oxidoreductase(flavoenzyme); HET: FAD; 1.74A {Escherichia coli} SCOP: c.3.1.5 c.3.1.5 d.87.1.1 PDB: 1geu_A* 1ger_A* 1get_A*

Probab=100.00  E-value=1.8e-40  Score=336.59  Aligned_cols=373  Identities=18%  Similarity=0.218  Sum_probs=251.8

Q ss_pred             CCCcEEEEcCcHHHHHHHHHHHHcCCCCCcEEEEcCCCCCCCC--CCCC-cccccC----------CCCC-------CCC
Q 012165           50 ENREFVIVGGGNAAGYAARTFVEHGMADGRLCIVSKEAYAPYE--RPAL-TKGYLF----------PLDK-------KPA  109 (469)
Q Consensus        50 ~~~~vvIIGgG~AGl~aA~~L~~~g~~~~~V~vie~~~~~~~~--~~~l-~~~~~~----------~~~~-------~~~  109 (469)
                      .++||+|||||+||+++|.+|++.|.   +|+|||++...+-.  .... ++.++.          ....       ...
T Consensus         3 ~~~dvvIIGgG~aGl~aA~~l~~~g~---~V~liE~~~~GG~~~~~gciP~k~l~~~a~~~~~~~~~~~~~g~~~~~~~~   79 (450)
T 1ges_A            3 KHYDYIAIGGGSGGIASINRAAMYGQ---KCALIEAKELGGTCVNVGCVPKKVMWHAAQIREAIHMYGPDYGFDTTINKF   79 (450)
T ss_dssp             CEEEEEEECCSHHHHHHHHHHHTTTC---CEEEEESSCTTHHHHHHSHHHHHHHHHHHHHHHHHHTTGGGGTEEEEEEEE
T ss_pred             ccCCEEEECCCHHHHHHHHHHHhCCC---eEEEEcCCCCCCcccccCccChHHHHHHHHHHHHHHHHHHhcCccCCCCcc
Confidence            35799999999999999999999886   79999997421000  0000 000000          0000       000


Q ss_pred             CCCCCcccc---CCCCCCCCHhHHHHCCcEEEeCCcEEEEeCCCcEEEeCCCeEEEeccEEeccCCCCCcCCCCCCCCcC
Q 012165          110 RLPGFHTCV---GSGGERQTPEWYKEKGIEMIYQDPVTSIDIEKQTLITNSGKLLKYGSLIVATGCTASRFPEKIGGYLP  186 (469)
Q Consensus       110 ~~~~~~~~~---~~~~~~~~~~~~~~~~i~~~~~~~v~~id~~~~~v~~~~g~~~~yd~lVlAtG~~~~~~~~~~g~~~~  186 (469)
                      ++..+....   ...........+++.+++++.+ ++..++.  ++|.+ +++++.||+||||||++|. .|.++|.  +
T Consensus        80 ~~~~l~~~~~~~~~~~~~~~~~~~~~~~v~~~~g-~~~~i~~--~~v~~-~g~~~~~d~lviAtGs~p~-~p~i~g~--~  152 (450)
T 1ges_A           80 NWETLIASRTAYIDRIHTSYENVLGKNNVDVIKG-FARFVDA--KTLEV-NGETITADHILIATGGRPS-HPDIPGV--E  152 (450)
T ss_dssp             CHHHHHHHHHHHHHHHHHHHHHHHHHTTCEEEES-CCEEEET--TEEEE-TTEEEEEEEEEECCCEEEC-CCCSTTG--G
T ss_pred             CHHHHHHHHHHHHHHHHHHHHHHHHhCCCEEEEe-EEEEecC--CEEEE-CCEEEEeCEEEECCCCCCC-CCCCCCc--c
Confidence            000000000   0000000123346789999987 5566764  56777 6778999999999999987 4555553  2


Q ss_pred             cEEEecCHHHHHHHHHhhhcCCeEEEEcCChHHHHHHHHHHhCCCeEe------------------eeHHHHHHcCcEEE
Q 012165          187 GVHYIRDVADADALISSLEKAKKVVVVGGGYIGMEVAAAAVGWKLDTT------------------RYEQLYQQNGVKFV  248 (469)
Q Consensus       187 ~v~~~~~~~~~~~~~~~~~~~~~vvVvG~G~~g~e~A~~l~~~g~~v~------------------~~~~~l~~~gV~~~  248 (469)
                      .   ..+.   +.+......+++++|||+|++|+|+|..|+++|.+|+                  .+.+.+++.||+++
T Consensus       153 ~---~~~~---~~~~~~~~~~~~vvViGgG~~g~e~A~~l~~~g~~Vtlv~~~~~~l~~~~~~~~~~l~~~l~~~Gv~i~  226 (450)
T 1ges_A          153 Y---GIDS---DGFFALPALPERVAVVGAGYIGVELGGVINGLGAKTHLFEMFDAPLPSFDPMISETLVEVMNAEGPQLH  226 (450)
T ss_dssp             G---SBCH---HHHHHCSSCCSEEEEECCSHHHHHHHHHHHHTTCEEEEECSSSSSSTTSCHHHHHHHHHHHHHHSCEEE
T ss_pred             c---eecH---HHhhhhhhcCCeEEEECCCHHHHHHHHHHHhcCCEEEEEEeCCchhhhhhHHHHHHHHHHHHHCCCEEE
Confidence            1   2222   3333333467999999999999999999999999988                  44677888999999


Q ss_pred             cCCeEEEEEeCCCCcEEEEEcCCCCEEeCCEEEEccCCccCCch--hhhcCCccc-CCCEEeCCCCCCCCCceEEecccc
Q 012165          249 KGASIKNLEAGSDGRVAAVKLEDGSTIDADTIVIGIGAKPTVSP--FERVGLNSS-VGGIQVDGQFRTRMPGIFAIGDVA  325 (469)
Q Consensus       249 ~~~~v~~i~~~~~~~v~~v~~~~g~~i~~D~vi~a~G~~p~~~~--~~~~gl~~~-~g~i~Vd~~~~t~~~~Vfa~GD~a  325 (469)
                      +++++++++.++++.+ .+.+++|+++++|.||+|+|++|++++  ++++|++.+ +|+|.||+++||++|+|||+|||+
T Consensus       227 ~~~~v~~i~~~~~~~~-~v~~~~g~~i~~D~vv~a~G~~p~~~~l~~~~~gl~~~~~g~i~vd~~~~t~~~~IyA~GD~~  305 (450)
T 1ges_A          227 TNAIPKAVVKNTDGSL-TLELEDGRSETVDCLIWAIGREPANDNINLEAAGVKTNEKGYIVVDKYQNTNIEGIYAVGDNT  305 (450)
T ss_dssp             CSCCEEEEEECTTSCE-EEEETTSCEEEESEEEECSCEEESCTTSCHHHHTCCBCTTSCBCCCTTSBCSSTTEEECSGGG
T ss_pred             eCCEEEEEEEeCCcEE-EEEECCCcEEEcCEEEECCCCCcCCCCCCchhcCceECCCCCEeECCCCccCCCCEEEEeccC
Confidence            9999999986544433 678889999999999999999999973  688888876 677999999999999999999998


Q ss_pred             ccCCccCCcccccchHHHHHHHHHHHHHHHhcCCC---CCCCCCCceeeecccccCCCcceeeEEeecCCC---------
Q 012165          326 AFPLKMYDRTARVEHVDHARQSAQHCIKALLSAQT---HTYDYLPYFYSRVFEYEGSPRKVWWQFFGDNVG---------  393 (469)
Q Consensus       326 ~~~~~~~~~~~~~~~~~~A~~~a~~~a~~i~~~~~---~~~~~~p~~~~~~~~~~g~~~~~~~~~~G~~~~---------  393 (469)
                      ..+.          .+..|..||+.+|.||++...   ..|..+|+.   .|..+.      +..+|....         
T Consensus       306 ~~~~----------~~~~A~~~g~~aa~~i~~~~~~~~~~~~~~p~~---~~~~~~------~a~vG~~e~~a~~~~g~~  366 (450)
T 1ges_A          306 GAVE----------LTPVAVAAGRRLSERLFNNKPDEHLDYSNIPTV---VFSHPP------IGTVGLTEPQAREQYGDD  366 (450)
T ss_dssp             TSCC----------CHHHHHHHHHHHHHHHHTTCTTCCCCCSSCCEE---ECCSSC------EEEEECCHHHHHHHHCGG
T ss_pred             CCCc----------cHHHHHHHHHHHHHHHcCCCCcccCCCCCCCeE---EECCCc------eEEEeCCHHHHHhcCCCC
Confidence            6432          455699999999999997432   245556652   232211      444554311         


Q ss_pred             cEEEE------------ccCCCcEEEEEEe--CCEEEEEEeecCChHHhHHH-HHHHhCCCCCCh--hhhcCCCcHHHHH
Q 012165          394 ETIEI------------GNFDPKIATFWID--SGKLKGVLVESGSPEEFQLL-PTLARSQPFVDK--AKLQQASSVEEAL  456 (469)
Q Consensus       394 ~~~~~------------~~~~~~~~~~~~~--~~~l~g~~~~~~~~~~~~~~-~~~~~~~~~~~~--~~~~~~~~~~~~~  456 (469)
                      .....            ......|.|+.++  +++|+|+++++.++.++... ..+++.+.+++.  ..++.|||+.|++
T Consensus       367 ~~~~~~~~~~~~~~~~~~~~~~~~~k~~~~~~~~~ilG~~~~g~~a~~~i~~~~~ai~~~~t~~~l~~~~~~hPt~~e~~  446 (450)
T 1ges_A          367 QVKVYKSSFTAMYTAVTTHRQPCRMKLVCVGSEEKIVGIHGIGFGMDEMLQGFAVALKMGATKKDFDNTVAIHPTAAEEF  446 (450)
T ss_dssp             GEEEEEEEEECHHHHTSSSCCEEEEEEEEETTTTEEEEEEEESTTHHHHHHHHHHHHHTTCBHHHHHTSCCCSSCSGGGG
T ss_pred             cEEEEEEECchhhHHHhcCCCcEEEEEEEECCCCEEEEEEEECCCHHHHHHHHHHHHHCCCCHHHHhcCccCCCChHHHH
Confidence            11110            0112236777775  69999999977777665554 445788877662  2357899999987


Q ss_pred             HH
Q 012165          457 EI  458 (469)
Q Consensus       457 ~~  458 (469)
                      +.
T Consensus       447 ~~  448 (450)
T 1ges_A          447 VT  448 (450)
T ss_dssp             GS
T ss_pred             Hh
Confidence            64

>3lad_A Dihydrolipoamide dehydrogenase; oxidoreductase; HET: FAD; 2.20A {Azotobacter vinelandii} SCOP: c.3.1.5 c.3.1.5 d.87.1.1 PDB: 1lpf_A*

Probab=100.00  E-value=9.1e-39  Score=326.74  Aligned_cols=384  Identities=17%  Similarity=0.218  Sum_probs=261.1

Q ss_pred             CCCcEEEEcCcHHHHHHHHHHHHcCCCCCcEEEEcCCCCCCCCCCCCcc----------------------------ccc
Q 012165           50 ENREFVIVGGGNAAGYAARTFVEHGMADGRLCIVSKEAYAPYERPALTK----------------------------GYL  101 (469)
Q Consensus        50 ~~~~vvIIGgG~AGl~aA~~L~~~g~~~~~V~vie~~~~~~~~~~~l~~----------------------------~~~  101 (469)
                      +++||+|||||+||++||..|++.|+   +|+|||+++..+.. ..+..                            .+-
T Consensus         2 ~~~DVvVIGgG~aGl~aA~~la~~G~---~V~liEk~~~~gG~-~~~GG~~~~~gciPsk~l~~~~~~~~~~~~~~~~~g   77 (476)
T 3lad_A            2 QKFDVIVIGAGPGGYVAAIKSAQLGL---KTALIEKYKGKEGK-TALGGTCLNVGCIPSKALLDSSYKFHEAHESFKLHG   77 (476)
T ss_dssp             CCCSEEEECCSHHHHHHHHHHHHHTC---CEEEEECCBCTTSS-BCCSHHHHHHSHHHHHHHHHHHHHHHHHHTTSGGGT
T ss_pred             CcCCEEEECcCHHHHHHHHHHHhCCC---EEEEEeCCCccCCC-CCcCCccccccHHHHHHHHHHHHHHHHHHHHHHhcC
Confidence            46899999999999999999999987   79999998632111 00000                            000


Q ss_pred             CCCCCCCCCCCCCcccc---CCCCCCCCHhHHHHCCcEEEeCCcEEEEeCCCcEEEeCCC--eEEEeccEEeccCCCCCc
Q 012165          102 FPLDKKPARLPGFHTCV---GSGGERQTPEWYKEKGIEMIYQDPVTSIDIEKQTLITNSG--KLLKYGSLIVATGCTASR  176 (469)
Q Consensus       102 ~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~i~~~~~~~v~~id~~~~~v~~~~g--~~~~yd~lVlAtG~~~~~  176 (469)
                      ........+++......   ..........++++.+++++.+ .+..++.....|.+.+|  .++.||+||||||++|..
T Consensus        78 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~g-~~~~~~~~~~~v~~~~g~~~~~~~d~lvlAtG~~p~~  156 (476)
T 3lad_A           78 ISTGEVAIDVPTMIARKDQIVRNLTGGVASLIKANGVTLFEG-HGKLLAGKKVEVTAADGSSQVLDTENVILASGSKPVE  156 (476)
T ss_dssp             EECSCCEECHHHHHHHHHHHHHHHHHHHHHHHHHHTCEEEES-EEEECSTTCEEEECTTSCEEEECCSCEEECCCEEECC
T ss_pred             cccCCCccCHHHHHHHHHHHHHHHHHHHHHHHHhCCCEEEEe-EEEEecCCEEEEEcCCCceEEEEcCEEEEcCCCCCCC
Confidence            00000000000000000   0000000113455679999986 56667777777877777  579999999999999874


Q ss_pred             CCCCCCCCcCcEEEecCHHHHHHHHHhhhcCCeEEEEcCChHHHHHHHHHHhCCCeEe------------------eeHH
Q 012165          177 FPEKIGGYLPGVHYIRDVADADALISSLEKAKKVVVVGGGYIGMEVAAAAVGWKLDTT------------------RYEQ  238 (469)
Q Consensus       177 ~~~~~g~~~~~v~~~~~~~~~~~~~~~~~~~~~vvVvG~G~~g~e~A~~l~~~g~~v~------------------~~~~  238 (469)
                      +|. ++.+.+.+++      +..+......+++++|||+|++|+|+|..|.++|.+|+                  .+.+
T Consensus       157 ~~~-~~~~~~~v~~------~~~~~~~~~~~~~v~ViGgG~~g~e~A~~l~~~g~~Vtlv~~~~~~l~~~~~~~~~~l~~  229 (476)
T 3lad_A          157 IPP-APVDQDVIVD------STGALDFQNVPGKLGVIGAGVIGLELGSVWARLGAEVTVLEAMDKFLPAVDEQVAKEAQK  229 (476)
T ss_dssp             CTT-SCCCSSSEEE------HHHHTSCSSCCSEEEEECCSHHHHHHHHHHHHTTCEEEEEESSSSSSTTSCHHHHHHHHH
T ss_pred             CCC-CCCCcccEEe------chhhhccccCCCeEEEECCCHHHHHHHHHHHHcCCcEEEEecCCCcCcccCHHHHHHHHH
Confidence            443 3323344443      23333333567999999999999999999999999987                  4567


Q ss_pred             HHHHcCcEEEcCCeEEEEEeCCCCcEEEEEcCCC---CEEeCCEEEEccCCccCCch--hhhcCCccc-CCCEEeCCCCC
Q 012165          239 LYQQNGVKFVKGASIKNLEAGSDGRVAAVKLEDG---STIDADTIVIGIGAKPTVSP--FERVGLNSS-VGGIQVDGQFR  312 (469)
Q Consensus       239 ~l~~~gV~~~~~~~v~~i~~~~~~~v~~v~~~~g---~~i~~D~vi~a~G~~p~~~~--~~~~gl~~~-~g~i~Vd~~~~  312 (469)
                      .+++.||++++++.+++++.++++ + .+.+.++   +++++|.||+|+|++|++++  ++.+++..+ +|+|.||+++|
T Consensus       230 ~l~~~Gv~v~~~~~v~~i~~~~~~-~-~v~~~~~~g~~~~~~D~vi~a~G~~p~~~~l~~~~~g~~~~~~G~i~vd~~~~  307 (476)
T 3lad_A          230 ILTKQGLKILLGARVTGTEVKNKQ-V-TVKFVDAEGEKSQAFDKLIVAVGRRPVTTDLLAADSGVTLDERGFIYVDDYCA  307 (476)
T ss_dssp             HHHHTTEEEEETCEEEEEEECSSC-E-EEEEESSSEEEEEEESEEEECSCEEECCTTCCSSCCSCCBCTTSCBCCCTTSB
T ss_pred             HHHhCCCEEEECCEEEEEEEcCCE-E-EEEEEeCCCcEEEECCEEEEeeCCcccCCCCCccccCccccCCCCEeeCCCcc
Confidence            788999999999999999865333 3 3566554   67999999999999999874  678888876 57799999999


Q ss_pred             CCCCceEEeccccccCCccCCcccccchHHHHHHHHHHHHHHHhcCCC-CCCCCCCceeeecccccCCCcceeeEEeecC
Q 012165          313 TRMPGIFAIGDVAAFPLKMYDRTARVEHVDHARQSAQHCIKALLSAQT-HTYDYLPYFYSRVFEYEGSPRKVWWQFFGDN  391 (469)
Q Consensus       313 t~~~~Vfa~GD~a~~~~~~~~~~~~~~~~~~A~~~a~~~a~~i~~~~~-~~~~~~p~~~~~~~~~~g~~~~~~~~~~G~~  391 (469)
                      |++|+|||+|||+..+.          ....|..+|+.+|++|++... ..+..+|+  . .|..+      .+..+|.+
T Consensus       308 t~~~~Iya~GD~~~~~~----------~~~~A~~~g~~aa~~i~g~~~~~~~~~~p~--~-~~~~~------~~a~vGlt  368 (476)
T 3lad_A          308 TSVPGVYAIGDVVRGAM----------LAHKASEEGVVVAERIAGHKAQMNYDLIPA--V-IYTHP------EIAGVGKT  368 (476)
T ss_dssp             CSSTTEEECGGGSSSCC----------CHHHHHHHHHHHHHHHHHCCCCCCTTCCCE--E-ECSSS------EEEEEECC
T ss_pred             cCCCCEEEEEccCCCcc----------cHHHHHHHHHHHHHHhcCCCcccCCCCCCE--E-EECcC------CEEEeeCC
Confidence            99999999999996543          345699999999999997542 23455664  2 23322      14556654


Q ss_pred             CC-------cEEE-Ecc-----------CCCcEEEEEEe--CCEEEEEEeecCChHHhHH-HHHHHhCCCCCCh--hhhc
Q 012165          392 VG-------ETIE-IGN-----------FDPKIATFWID--SGKLKGVLVESGSPEEFQL-LPTLARSQPFVDK--AKLQ  447 (469)
Q Consensus       392 ~~-------~~~~-~~~-----------~~~~~~~~~~~--~~~l~g~~~~~~~~~~~~~-~~~~~~~~~~~~~--~~~~  447 (469)
                      +.       +... .-.           ....+.|+.++  +++|+|+++++.++.++.. +..+|+.+.+++.  ..++
T Consensus       369 e~~a~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~k~~~~~~~~~ilG~~~~g~~a~~~i~~~~~ai~~~~t~~~l~~~~~  448 (476)
T 3lad_A          369 EQALKAEGVAINVGVFPFAASGRAMAANDTAGFVKVIADAKTDRVLGVHVIGPSAAELVQQGAIAMEFGTSAEDLGMMVF  448 (476)
T ss_dssp             HHHHHHTTCCEEEEEEEGGGCHHHHHHTCCCCEEEEEEETTTCBEEEEEEEETTHHHHHHHHHHHHHHTCBHHHHHTSCC
T ss_pred             HHHHHhcCCCEEEEEEeccccchheecCCCcEEEEEEEECCCCEEEEEEEECCCHHHHHHHHHHHHHCCCcHHHHhcCcc
Confidence            32       1111 000           12346777765  5999999998887766554 4556788887763  2347


Q ss_pred             CCCcHHHHHHHHHhcCCcc
Q 012165          448 QASSVEEALEIARAALPVE  466 (469)
Q Consensus       448 ~~~~~~~~~~~~~~~~~~~  466 (469)
                      .||++.|++++|+.++..+
T Consensus       449 ~hPt~~e~~~~~~~~~~~~  467 (476)
T 3lad_A          449 AHPALSEALHEAALAVSGH  467 (476)
T ss_dssp             CSSCSHHHHHHHHHHHTTC
T ss_pred             CCCChHHHHHHHHHHHhcc
Confidence            8899999999999876554

>2r9z_A Glutathione amide reductase; NAD, FAD, substrate specificity, oxidoreductase; HET: FAD; 2.10A {Marichromatium gracile} PDB: 2rab_A*

Probab=100.00  E-value=6e-39  Score=326.39  Aligned_cols=374  Identities=17%  Similarity=0.264  Sum_probs=252.4

Q ss_pred             CCCcEEEEcCcHHHHHHHHHHHHcCCCCCcEEEEcCCCCCCC--CCCCC-ccc----------------ccCCCCCCCCC
Q 012165           50 ENREFVIVGGGNAAGYAARTFVEHGMADGRLCIVSKEAYAPY--ERPAL-TKG----------------YLFPLDKKPAR  110 (469)
Q Consensus        50 ~~~~vvIIGgG~AGl~aA~~L~~~g~~~~~V~vie~~~~~~~--~~~~l-~~~----------------~~~~~~~~~~~  110 (469)
                      .++||+|||||+||+++|.+|++.|.   +|+|||++...+-  .+... ++.                +-........+
T Consensus         3 ~~~dVvIIGgG~aGl~aA~~l~~~g~---~V~liE~~~~GG~~~~~gciP~k~l~~~a~~~~~~~~~~~~g~~~~~~~~~   79 (463)
T 2r9z_A            3 QHFDLIAIGGGSGGLAVAEKAAAFGK---RVALIESKALGGTCVNVGCVPKKVMWYASHLAEAVRDAPGFGVQASGGTLD   79 (463)
T ss_dssp             CCEEEEEECCSHHHHHHHHHHHHTTC---CEEEEESSCTTHHHHHHSHHHHHHHHHHHHHHHHHHHGGGGTBCCC---CC
T ss_pred             ccCcEEEECCCHHHHHHHHHHHhCCC---cEEEEcCCCCCCcCcCcCchhHHHHHHHHHHHHHHhhhhhcCcccCCCCcC
Confidence            45899999999999999999999887   7999999742100  00000 000                00000000000


Q ss_pred             CCCCccccC---CCCCCCCHhHHHHCCcEEEeCCcEEEEeCCCcEEEeCCCeEEEeccEEeccCCCCCcCCCCCCCCcCc
Q 012165          111 LPGFHTCVG---SGGERQTPEWYKEKGIEMIYQDPVTSIDIEKQTLITNSGKLLKYGSLIVATGCTASRFPEKIGGYLPG  187 (469)
Q Consensus       111 ~~~~~~~~~---~~~~~~~~~~~~~~~i~~~~~~~v~~id~~~~~v~~~~g~~~~yd~lVlAtG~~~~~~~~~~g~~~~~  187 (469)
                      ++.+.....   ..........+++.+++++.+ ++..++.  ++|++ +++++.||+||||||++|. .|.++|.  +.
T Consensus        80 ~~~~~~~~~~~~~~~~~~~~~~~~~~gv~~~~g-~~~~i~~--~~v~~-~g~~~~~d~lviAtGs~p~-~p~i~G~--~~  152 (463)
T 2r9z_A           80 WPRLVAGRDRYIGAINSFWDGYVERLGITRVDG-HARFVDA--HTIEV-EGQRLSADHIVIATGGRPI-VPRLPGA--EL  152 (463)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHTTCEEEES-CEEEEET--TEEEE-TTEEEEEEEEEECCCEEEC-CCSCTTG--GG
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHCCCEEEEe-EEEEccC--CEEEE-CCEEEEcCEEEECCCCCCC-CCCCCCc--cc
Confidence            000000000   000000122346789999987 5666764  56777 6778999999999999987 4555553  11


Q ss_pred             EEEecCHHHHHHHHHhhhcCCeEEEEcCChHHHHHHHHHHhCCCeEe------------------eeHHHHHHcCcEEEc
Q 012165          188 VHYIRDVADADALISSLEKAKKVVVVGGGYIGMEVAAAAVGWKLDTT------------------RYEQLYQQNGVKFVK  249 (469)
Q Consensus       188 v~~~~~~~~~~~~~~~~~~~~~vvVvG~G~~g~e~A~~l~~~g~~v~------------------~~~~~l~~~gV~~~~  249 (469)
                         ..+   .+.+......+++++|||+|.+|+|+|..|.++|.+|+                  .+.+.+++.||++++
T Consensus       153 ---~~~---~~~~~~~~~~~~~vvVvGgG~~g~e~A~~l~~~G~~Vtlv~~~~~~l~~~~~~~~~~l~~~l~~~gv~i~~  226 (463)
T 2r9z_A          153 ---GIT---SDGFFALQQQPKRVAIIGAGYIGIELAGLLRSFGSEVTVVALEDRLLFQFDPLLSATLAENMHAQGIETHL  226 (463)
T ss_dssp             ---SBC---HHHHHHCSSCCSEEEEECCSHHHHHHHHHHHHTTCEEEEECSSSSSSTTSCHHHHHHHHHHHHHTTCEEES
T ss_pred             ---eec---HHHHhhhhccCCEEEEECCCHHHHHHHHHHHhcCCEEEEEEcCCccccccCHHHHHHHHHHHHHCCCEEEe
Confidence               222   23333333457999999999999999999999999987                  346778899999999


Q ss_pred             CCeEEEEEeCCCCcEEEEEcCCCC-EEeCCEEEEccCCccCCch--hhhcCCccc-CCCEEeCCCCCCCCCceEEecccc
Q 012165          250 GASIKNLEAGSDGRVAAVKLEDGS-TIDADTIVIGIGAKPTVSP--FERVGLNSS-VGGIQVDGQFRTRMPGIFAIGDVA  325 (469)
Q Consensus       250 ~~~v~~i~~~~~~~v~~v~~~~g~-~i~~D~vi~a~G~~p~~~~--~~~~gl~~~-~g~i~Vd~~~~t~~~~Vfa~GD~a  325 (469)
                      ++.+++++.++++  ..+.+++|+ ++++|.||+|+|++|++++  ++++|++.+ +|+|.||+++||+.|+|||+|||+
T Consensus       227 ~~~v~~i~~~~~~--~~v~~~~G~~~i~~D~vv~a~G~~p~~~~l~~~~~g~~~~~~G~i~vd~~~~t~~~~Iya~GD~~  304 (463)
T 2r9z_A          227 EFAVAALERDAQG--TTLVAQDGTRLEGFDSVIWAVGRAPNTRDLGLEAAGIEVQSNGMVPTDAYQNTNVPGVYALGDIT  304 (463)
T ss_dssp             SCCEEEEEEETTE--EEEEETTCCEEEEESEEEECSCEEESCTTSCHHHHTCCCCTTSCCCCCTTSBCSSTTEEECGGGG
T ss_pred             CCEEEEEEEeCCe--EEEEEeCCcEEEEcCEEEECCCCCcCCCCCCchhcCCccCCCCCEeECCCCccCCCCEEEEeecC
Confidence            9999999864333  367888998 8999999999999999874  577888876 677999999999999999999998


Q ss_pred             ccCCccCCcccccchHHHHHHHHHHHHHHHhcCCC---CCCCCCCceeeecccccCCCcceeeEEeecCCC--------c
Q 012165          326 AFPLKMYDRTARVEHVDHARQSAQHCIKALLSAQT---HTYDYLPYFYSRVFEYEGSPRKVWWQFFGDNVG--------E  394 (469)
Q Consensus       326 ~~~~~~~~~~~~~~~~~~A~~~a~~~a~~i~~~~~---~~~~~~p~~~~~~~~~~g~~~~~~~~~~G~~~~--------~  394 (469)
                      ..+.          .+..|..+|+.+|.||++...   ..|..+|+.   .|..+.      +..+|....        +
T Consensus       305 ~~~~----------~~~~A~~~g~~aa~~i~g~~~~~~~~~~~~p~~---~~~~~~------~a~vGl~e~~a~~~~g~~  365 (463)
T 2r9z_A          305 GRDQ----------LTPVAIAAGRRLAERLFDGQSERKLDYDNIPTV---VFAHPP------LSKVGLSEPEARERLGDV  365 (463)
T ss_dssp             TSCC----------CHHHHHHHHHHHHHHHHSCCTTCCCCCSSCCEE---ECCSSC------EEEEECCHHHHHHHHCSC
T ss_pred             CCcc----------cHHHHHHHHHHHHHHHcCCCCcccCCCCCCCEE---EeCCCC------eEEEcCCHHHHHhcCCCC
Confidence            6432          456699999999999997542   345566652   232221      444553311        1


Q ss_pred             EEEE------------ccCCCcEEEEEEe--CCEEEEEEeecCChHHhHH-HHHHHhCCCCCCh--hhhcCCCcHHHHHH
Q 012165          395 TIEI------------GNFDPKIATFWID--SGKLKGVLVESGSPEEFQL-LPTLARSQPFVDK--AKLQQASSVEEALE  457 (469)
Q Consensus       395 ~~~~------------~~~~~~~~~~~~~--~~~l~g~~~~~~~~~~~~~-~~~~~~~~~~~~~--~~~~~~~~~~~~~~  457 (469)
                      +...            ......|.|++++  +++|+|+++++.++.++.. +..+++.+.+++.  ..++.||+++|+++
T Consensus       366 ~~~~~~~~~~~~~~~~~~~~~~~~klv~~~~~~~ilG~~~~g~~a~~~i~~~~~ai~~~~t~~~l~~~~~~hPt~~e~~~  445 (463)
T 2r9z_A          366 LTVYETSFTPMRYALNEHGPKTAMKLVCAGPEQRVVGVHVIGDGADEMLQGFAVAVKMGATKADFDNTVAIHPGSAEELV  445 (463)
T ss_dssp             EEEEEEEECCGGGTTSSSCCCEEEEEEEETTTTEEEEEEEESTTGGGTSHHHHHHHHTTCBHHHHHTSCCCSSSSGGGGG
T ss_pred             EEEEEEEcccchhhhhcCCCcEEEEEEEECCCCEEEEEEEECCCHHHHHHHHHHHHHCCCCHHHHhcCccCCCCHHHHHH
Confidence            1110            1112347788775  6999999987776766444 4455778777662  23578999999987


Q ss_pred             HHH
Q 012165          458 IAR  460 (469)
Q Consensus       458 ~~~  460 (469)
                      .++
T Consensus       446 ~~~  448 (463)
T 2r9z_A          446 TLK  448 (463)
T ss_dssp             CCC
T ss_pred             HHH
Confidence            654

>2yqu_A 2-oxoglutarate dehydrogenase E3 component; lipoamide dehydrogenase, 2-oxoglutarate dehydrogenase comple pyruvate dehydrogenase complex; HET: FAD; 1.70A {Thermus thermophilus} PDB: 2eq7_A*

Probab=100.00  E-value=3.2e-38  Score=320.77  Aligned_cols=380  Identities=20%  Similarity=0.252  Sum_probs=254.3

Q ss_pred             CcEEEEcCcHHHHHHHHHHHHcCCCCCcEEEEcCCCCCCCCC---CCC-cccccC----------CCC-----CCCCCCC
Q 012165           52 REFVIVGGGNAAGYAARTFVEHGMADGRLCIVSKEAYAPYER---PAL-TKGYLF----------PLD-----KKPARLP  112 (469)
Q Consensus        52 ~~vvIIGgG~AGl~aA~~L~~~g~~~~~V~vie~~~~~~~~~---~~l-~~~~~~----------~~~-----~~~~~~~  112 (469)
                      +||+|||||+||+++|..|++.|.   +|+|||+++.++...   ... ++.++.          ...     ....++.
T Consensus         2 ~dvvIIG~G~aGl~aA~~l~~~g~---~V~lie~~~~~GG~~~~~g~~p~k~l~~~~~~~~~~~~~~~g~~~~~~~~~~~   78 (455)
T 2yqu_A            2 YDLLVIGAGPGGYVAAIRAAQLGM---KVGVVEKEKALGGTCLRVGCIPSKALLETTERIYEAKKGLLGAKVKGVELDLP   78 (455)
T ss_dssp             EEEEEECCSHHHHHHHHHHHHTTC---CEEEEESSSSSSHHHHHHSHHHHHHHHHHHHHHHHHHHCCTTEEECCEEECHH
T ss_pred             CCEEEECCChhHHHHHHHHHHCCC---eEEEEeCCCCCCCccceecchhHHHHHHHHHHHHHHhhhcCCcccCCCccCHH
Confidence            699999999999999999999987   799999986542110   000 000000          000     0000000


Q ss_pred             CCcccc---CCCCCCCCHhHHHHCCcEEEeCCcEEEEeCCCcEEEeC-CCeEEEeccEEeccCCCCCcCCCCCCCCcCcE
Q 012165          113 GFHTCV---GSGGERQTPEWYKEKGIEMIYQDPVTSIDIEKQTLITN-SGKLLKYGSLIVATGCTASRFPEKIGGYLPGV  188 (469)
Q Consensus       113 ~~~~~~---~~~~~~~~~~~~~~~~i~~~~~~~v~~id~~~~~v~~~-~g~~~~yd~lVlAtG~~~~~~~~~~g~~~~~v  188 (469)
                      .+....   .........+++++.+++++.+. +..++.  +.+.+. +|.++.||+||+|||++|.. |++++.+.+++
T Consensus        79 ~~~~~~~~~~~~l~~~~~~~~~~~~v~~~~g~-~~~i~~--~~~~v~~~g~~~~~d~lviAtG~~p~~-~~~~g~~~~~v  154 (455)
T 2yqu_A           79 ALMAHKDKVVQANTQGVEFLFKKNGIARHQGT-ARFLSE--RKVLVEETGEELEARYILIATGSAPLI-PPWAQVDYERV  154 (455)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHTCEEEESC-EEESSS--SEEEETTTCCEEEEEEEEECCCEEECC-CTTBCCCSSSE
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHhCCCEEEEeE-EEEecC--CeEEEeeCCEEEEecEEEECCCCCCCC-CCCCCCCcCcE
Confidence            000000   00000001245567799999874 444554  344443 56789999999999999874 44555433344


Q ss_pred             EEecCHHHHHHHHHhhhcCCeEEEEcCChHHHHHHHHHHhCCCeEe------------------eeHHHHHHcCcEEEcC
Q 012165          189 HYIRDVADADALISSLEKAKKVVVVGGGYIGMEVAAAAVGWKLDTT------------------RYEQLYQQNGVKFVKG  250 (469)
Q Consensus       189 ~~~~~~~~~~~~~~~~~~~~~vvVvG~G~~g~e~A~~l~~~g~~v~------------------~~~~~l~~~gV~~~~~  250 (469)
                      .+      ...+......+++++|||+|++|+|+|..|+++|.+++                  .+.+.+++.||+++++
T Consensus       155 ~~------~~~~~~~~~~~~~vvIiGgG~~g~e~A~~l~~~g~~V~lv~~~~~~l~~~~~~~~~~l~~~l~~~Gv~i~~~  228 (455)
T 2yqu_A          155 VT------STEALSFPEVPKRLIVVGGGVIGLELGVVWHRLGAEVIVLEYMDRILPTMDLEVSRAAERVFKKQGLTIRTG  228 (455)
T ss_dssp             EC------HHHHTCCSSCCSEEEEECCSHHHHHHHHHHHHTTCEEEEECSSSSSCTTSCHHHHHHHHHHHHHHTCEEECS
T ss_pred             ec------hHHhhccccCCCeEEEECCCHHHHHHHHHHHHcCCEEEEEecCCccccccCHHHHHHHHHHHHHCCCEEEEC
Confidence            32      22222222357999999999999999999999999987                  3467788899999999


Q ss_pred             CeEEEEEeCCCCcEEEEEcCCCCEEeCCEEEEccCCccCCch--hhhcCCccc-CCCEEeCCCCCCCCCceEEecccccc
Q 012165          251 ASIKNLEAGSDGRVAAVKLEDGSTIDADTIVIGIGAKPTVSP--FERVGLNSS-VGGIQVDGQFRTRMPGIFAIGDVAAF  327 (469)
Q Consensus       251 ~~v~~i~~~~~~~v~~v~~~~g~~i~~D~vi~a~G~~p~~~~--~~~~gl~~~-~g~i~Vd~~~~t~~~~Vfa~GD~a~~  327 (469)
                      +++++++.++ +.+ .+.+++|+++++|.||+|+|.+|++++  ++.+|+..+ +|+|.||+++||+.|+|||+|||+..
T Consensus       229 ~~V~~i~~~~-~~v-~v~~~~g~~i~~D~vv~A~G~~p~~~~l~~~~~g~~~~~~g~i~vd~~~~t~~~~iya~GD~~~~  306 (455)
T 2yqu_A          229 VRVTAVVPEA-KGA-RVELEGGEVLEADRVLVAVGRRPYTEGLSLENAGLSTDERGRIPVDEHLRTRVPHIYAIGDVVRG  306 (455)
T ss_dssp             CCEEEEEEET-TEE-EEEETTSCEEEESEEEECSCEEECCTTCCGGGGTCCCCTTSCCCCCTTSBCSSTTEEECGGGSSS
T ss_pred             CEEEEEEEeC-CEE-EEEECCCeEEEcCEEEECcCCCcCCCCCChhhcCCccCCCCcEeECCCcccCCCCEEEEecCCCC
Confidence            9999998643 333 567778889999999999999999887  678888875 47799999999999999999999975


Q ss_pred             CCccCCcccccchHHHHHHHHHHHHHHHhcCCCCCC--CCCCceeeecccccCCCcceeeEEeecCCC-------cEEEE
Q 012165          328 PLKMYDRTARVEHVDHARQSAQHCIKALLSAQTHTY--DYLPYFYSRVFEYEGSPRKVWWQFFGDNVG-------ETIEI  398 (469)
Q Consensus       328 ~~~~~~~~~~~~~~~~A~~~a~~~a~~i~~~~~~~~--~~~p~~~~~~~~~~g~~~~~~~~~~G~~~~-------~~~~~  398 (469)
                      +.          .+..|..+|+.+|++|++. ..++  ..+|+  ...++.+       +..+|....       +....
T Consensus       307 ~~----------~~~~A~~~g~~aa~~i~~~-~~~~~~~~~p~--~~~~~~~-------~a~~G~~~~~a~~~g~~~~~~  366 (455)
T 2yqu_A          307 PM----------LAHKASEEGIAAVEHMVRG-FGHVDYQAIPS--VVYTHPE-------IAAVGYTEEELKAQGIPYKVG  366 (455)
T ss_dssp             CC----------CHHHHHHHHHHHHHHHHHS-CCCCCGGGCCE--EECSSSE-------EEEEECCHHHHHHHTCCEEEE
T ss_pred             cc----------CHHHHHHhHHHHHHHHcCC-CccCCCCCCCE--EEEcCCc-------eEEEECCHHHHHHcCCCEEEE
Confidence            42          3456999999999999974 3333  33453  2222211       344453321       11110


Q ss_pred             ------------ccCCCcEEEEEEe--CCEEEEEEeecCChHH-hHHHHHHHhCCCCCCh--hhhcCCCcHHHHHHHHHh
Q 012165          399 ------------GNFDPKIATFWID--SGKLKGVLVESGSPEE-FQLLPTLARSQPFVDK--AKLQQASSVEEALEIARA  461 (469)
Q Consensus       399 ------------~~~~~~~~~~~~~--~~~l~g~~~~~~~~~~-~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~  461 (469)
                                  ......|.+++++  +++|+|+++++..+.+ +..+..+++.+.+++.  .....||++.|+++.|++
T Consensus       367 ~~~~~~~~~~~~~~~~~~~~k~~~~~~~~~ilG~~~~g~~a~~~i~~~~~ai~~~~~~~~~~~~~~~~Pt~~e~~~~~~~  446 (455)
T 2yqu_A          367 KFPYSASGRARAMGETEGFIKVLAHAKTDRILGVHGIGARVGDVLAEAALALFFKASAEDLGRAPHAHPSLSEILKEAAL  446 (455)
T ss_dssp             EEEGGGCHHHHHHTCCCCEEEEEEETTTCBEEEEEEEETTHHHHHHHHHHHHHTTCBHHHHHHSCCCSSCTHHHHHHHHH
T ss_pred             EEEcccchHHHhcCCCcEEEEEEEECCCCEEEEEEEECCCHHHHHHHHHHHHHCCCCHHHHhhcccCCCCHHHHHHHHHH
Confidence                        0112347788885  7999999986666654 4445566788888763  235788999999999987


Q ss_pred             cCCcc
Q 012165          462 ALPVE  466 (469)
Q Consensus       462 ~~~~~  466 (469)
                      ++..+
T Consensus       447 ~~~~~  451 (455)
T 2yqu_A          447 AAWER  451 (455)
T ss_dssp             HHHSC
T ss_pred             HHhcC
Confidence            65443

>1lvl_A Dihydrolipoamide dehydrogenase; oxidoreductase; HET: FAD NAD; 2.45A {Pseudomonas putida} SCOP: c.3.1.5 c.3.1.5 d.87.1.1

Probab=100.00  E-value=3.4e-39  Score=327.86  Aligned_cols=377  Identities=16%  Similarity=0.205  Sum_probs=251.4

Q ss_pred             CCCcEEEEcCcHHHHHHHHHHHHcCCCCCcEEEEcCCCCCCCC---CCCC-ccccc-----------------CCC--CC
Q 012165           50 ENREFVIVGGGNAAGYAARTFVEHGMADGRLCIVSKEAYAPYE---RPAL-TKGYL-----------------FPL--DK  106 (469)
Q Consensus        50 ~~~~vvIIGgG~AGl~aA~~L~~~g~~~~~V~vie~~~~~~~~---~~~l-~~~~~-----------------~~~--~~  106 (469)
                      .++||+|||||+||++||.+|++.|.   +|+|||++. .+..   .... ++.++                 .+.  ..
T Consensus         4 ~~~dvvIIG~G~aGl~aA~~l~~~g~---~V~lie~~~-~GG~~~~~g~~Psk~l~~~~~~~~~~~~~~~~~~~g~~~~~   79 (458)
T 1lvl_A            4 IQTTLLIIGGGPGGYVAAIRAGQLGI---PTVLVEGQA-LGGTCLNIGCIPSKALIHVAEQFHQASRFTEPSPLGISVAS   79 (458)
T ss_dssp             EECSEEEECCSHHHHHHHHHHHHHTC---CEEEECSSC-TTHHHHHHSHHHHHHHHHHHHHHHHHHHTTSCCTTCCCCCC
T ss_pred             CcCCEEEECCCHHHHHHHHHHHHCCC---EEEEEccCC-CCCcCCCcCcHhHHHHHHHHHHHHHHhhcccccccCcccCC
Confidence            35899999999999999999999987   799999943 2100   0000 00000                 000  00


Q ss_pred             CCCCCCCCcccc---CCCCCCCCHhHHHHCCcEEEeCCcEEEEeCCCcEEEeCCCeEEEeccEEeccCCCCCcCCCCCCC
Q 012165          107 KPARLPGFHTCV---GSGGERQTPEWYKEKGIEMIYQDPVTSIDIEKQTLITNSGKLLKYGSLIVATGCTASRFPEKIGG  183 (469)
Q Consensus       107 ~~~~~~~~~~~~---~~~~~~~~~~~~~~~~i~~~~~~~v~~id~~~~~v~~~~g~~~~yd~lVlAtG~~~~~~~~~~g~  183 (469)
                      ...++..+....   .........+++++.+++++.+..+ .++  .++|.+++ .++.||+||||||++|+.+|.++. 
T Consensus        80 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gv~~~~g~~~-~~~--~~~v~v~~-~~~~~d~lviATGs~p~~~~~~~~-  154 (458)
T 1lvl_A           80 PRLDIGQSVAWKDGIVDRLTTGVAALLKKHGVKVVHGWAK-VLD--GKQVEVDG-QRIQCEHLLLATGSSSVELPMLPL-  154 (458)
T ss_dssp             CCCCHHHHHHHHHHHHHHHHHHHHHHHHHTTCEEECSCEE-EEE--TTEEEETT-EEEECSEEEECCCEEECCBTTBCC-
T ss_pred             CccCHHHHHHHHHHHHHHHHHHHHHHHHhCCcEEEEEEEE-Ecc--CCEEEEee-EEEEeCEEEEeCCCCCCCCCCCCc-
Confidence            000000000000   0000000124567889999997544 455  46788876 779999999999999875443332 


Q ss_pred             CcCcEEEecCHHHHHHHHHhhhcCCeEEEEcCChHHHHHHHHHHhCCCeEe------------------eeHHHHHHcCc
Q 012165          184 YLPGVHYIRDVADADALISSLEKAKKVVVVGGGYIGMEVAAAAVGWKLDTT------------------RYEQLYQQNGV  245 (469)
Q Consensus       184 ~~~~v~~~~~~~~~~~~~~~~~~~~~vvVvG~G~~g~e~A~~l~~~g~~v~------------------~~~~~l~~~gV  245 (469)
                      + ..+.   +..   ........+++++|||+|++|+|+|..|+++|.+|+                  .+.+.+++.||
T Consensus       155 ~-~~v~---~~~---~~~~~~~~~~~vvViGgG~~g~e~A~~l~~~g~~Vtlv~~~~~~l~~~~~~~~~~l~~~l~~~gv  227 (458)
T 1lvl_A          155 G-GPVI---SST---EALAPKALPQHLVVVGGGYIGLELGIAYRKLGAQVSVVEARERILPTYDSELTAPVAESLKKLGI  227 (458)
T ss_dssp             B-TTEE---CHH---HHTCCSSCCSEEEEECCSHHHHHHHHHHHHHTCEEEEECSSSSSSTTSCHHHHHHHHHHHHHHTC
T ss_pred             c-CcEe---cHH---HHhhhhccCCeEEEECcCHHHHHHHHHHHHCCCeEEEEEcCCccccccCHHHHHHHHHHHHHCCC
Confidence            1 1222   222   222222357999999999999999999999999988                  34667888999


Q ss_pred             EEEcCCeEEEEEeCCCCcEEEEEcCCC--CEEeCCEEEEccCCccCCch--hhhcCCcccCCCEEeCCCCCCCCCceEEe
Q 012165          246 KFVKGASIKNLEAGSDGRVAAVKLEDG--STIDADTIVIGIGAKPTVSP--FERVGLNSSVGGIQVDGQFRTRMPGIFAI  321 (469)
Q Consensus       246 ~~~~~~~v~~i~~~~~~~v~~v~~~~g--~~i~~D~vi~a~G~~p~~~~--~~~~gl~~~~g~i~Vd~~~~t~~~~Vfa~  321 (469)
                      ++++++.+++++.  + .+ .+...+|  +++++|.||+|+|++|++++  ++.+|+..++++|.||+++||+.|+|||+
T Consensus       228 ~i~~~~~v~~i~~--~-~v-~v~~~~G~~~~i~~D~vv~a~G~~p~~~~l~~~~~g~~~~~~~i~vd~~~~t~~~~Iya~  303 (458)
T 1lvl_A          228 ALHLGHSVEGYEN--G-CL-LANDGKGGQLRLEADRVLVAVGRRPRTKGFNLECLDLKMNGAAIAIDERCQTSMHNVWAI  303 (458)
T ss_dssp             EEETTCEEEEEET--T-EE-EEECSSSCCCEECCSCEEECCCEEECCSSSSGGGSCCCEETTEECCCTTCBCSSTTEEEC
T ss_pred             EEEECCEEEEEEe--C-CE-EEEECCCceEEEECCEEEECcCCCcCCCCCCcHhcCCcccCCEEeECCCCcCCCCCEEEe
Confidence            9999999999984  2 23 4554566  68999999999999999886  58888887633899999999999999999


Q ss_pred             ccccccCCccCCcccccchHHHHHHHHHHHHHHHhcCCCCC--CCCCCceeeecccccCCCcceeeEEeecCCC------
Q 012165          322 GDVAAFPLKMYDRTARVEHVDHARQSAQHCIKALLSAQTHT--YDYLPYFYSRVFEYEGSPRKVWWQFFGDNVG------  393 (469)
Q Consensus       322 GD~a~~~~~~~~~~~~~~~~~~A~~~a~~~a~~i~~~~~~~--~~~~p~~~~~~~~~~g~~~~~~~~~~G~~~~------  393 (469)
                      |||+..+.          .+..|..+|+.+|++|++. ..+  +..+|+  ...++..       +..+|....      
T Consensus       304 GD~~~~~~----------~~~~A~~~g~~aa~~i~g~-~~~~~~~~~p~--~~~~~p~-------~a~vG~~e~~a~~~g  363 (458)
T 1lvl_A          304 GDVAGEPM----------LAHRAMAQGEMVAEIIAGK-ARRFEPAAIAA--VCFTDPE-------VVVVGKTPEQASQQG  363 (458)
T ss_dssp             GGGGCSSC----------CHHHHHHHHHHHHHHHTTC-CCCCCCSCCCE--EECSSSE-------EEEEECCHHHHHHTT
T ss_pred             eccCCCcc----------cHHHHHHHHHHHHHHhcCC-CccCCCCCCCE--EEECCCC-------eEEEeCCHHHHHHcC
Confidence            99998542          3456999999999999963 333  444553  2222211       334443211      


Q ss_pred             -cEEEE------------ccCCCcEEEEEEe--CCEEEEEEeecCChHH-hHHHHHHHhCCCCCCh--hhhcCCCcHHHH
Q 012165          394 -ETIEI------------GNFDPKIATFWID--SGKLKGVLVESGSPEE-FQLLPTLARSQPFVDK--AKLQQASSVEEA  455 (469)
Q Consensus       394 -~~~~~------------~~~~~~~~~~~~~--~~~l~g~~~~~~~~~~-~~~~~~~~~~~~~~~~--~~~~~~~~~~~~  455 (469)
                       +....            ......|.|++++  +++|+|+++++..+.+ +..+..+|+.+.+++.  ..+..||++.|+
T Consensus       364 ~~~~~~~~~~~~~~~~~~~~~~~g~~kl~~d~~~~~ilG~~~vg~~a~e~i~~~~~ai~~~~~~~~l~~~~~~~Pt~~e~  443 (458)
T 1lvl_A          364 LDCIVAQFPFAANGRAMSLESKSGFVRVVARRDNHLILGWQAVGVAVSELSTAFAQSLEMGACLEDVAGTIHAHPTLGEA  443 (458)
T ss_dssp             CCEEEEEEEGGGCHHHHHTTCCCCEEEEEEETTTCBEEEEEEEETTGGGHHHHHHHHHHHTCBHHHHHTSCCCTTCTTHH
T ss_pred             CCEEEEEEECccchhhhhcCCCcEEEEEEEECCCCEEEEEEEECCCHHHHHHHHHHHHHCCCCHHHHhhCcCCCCCHHHH
Confidence             11110            0112347888884  6999999987666644 5555667888887763  224779999999


Q ss_pred             HHHHHhcCCcc
Q 012165          456 LEIARAALPVE  466 (469)
Q Consensus       456 ~~~~~~~~~~~  466 (469)
                      ++.|++++..+
T Consensus       444 ~~~a~~~~~~~  454 (458)
T 1lvl_A          444 VQEAALRALGH  454 (458)
T ss_dssp             HHHHHHHHTTC
T ss_pred             HHHHHHHHhcc
Confidence            99998776544

>4dna_A Probable glutathione reductase; structural genomics, protein structure initiative, NEW YORK structural genomix research consortium; HET: FAD; 2.80A {Sinorhizobium meliloti}

Probab=100.00  E-value=1.1e-39  Score=332.23  Aligned_cols=378  Identities=20%  Similarity=0.258  Sum_probs=258.8

Q ss_pred             CCCcEEEEcCcHHHHHHHHHHHHcCCCCCcEEEEcCCCCCCCC---CCCCc-c----------------cccCCCCCCCC
Q 012165           50 ENREFVIVGGGNAAGYAARTFVEHGMADGRLCIVSKEAYAPYE---RPALT-K----------------GYLFPLDKKPA  109 (469)
Q Consensus        50 ~~~~vvIIGgG~AGl~aA~~L~~~g~~~~~V~vie~~~~~~~~---~~~l~-~----------------~~~~~~~~~~~  109 (469)
                      .++||+|||||++|+++|..|++.|+   +|+|||+.. .+..   ....+ +                .+.........
T Consensus         4 ~~~DVvVIGaG~aGl~aA~~la~~G~---~V~liEk~~-~GG~~~~~gcip~k~l~~~~~~~~~~~~~~~~g~~~~~~~~   79 (463)
T 4dna_A            4 FDYDLFVIGGGSGGVRSGRLAAALGK---KVAIAEEFR-YGGTCVIRGCVPKKLYVYASQFAEHFEDAAGFGWTVGESRF   79 (463)
T ss_dssp             CSEEEEEECCSHHHHHHHHHHHTTTC---CEEEEESSC-TTHHHHHHSHHHHHHHHHHHHHHHHHHHGGGGTEEECCCEE
T ss_pred             CCCcEEEECcCHHHHHHHHHHHhCCC---EEEEEeCCC-CCCcccccCchhhHHHHHHHHHHHHHHHHHhcCcccCCCCc
Confidence            45899999999999999999999987   799999943 2110   00000 0                00000000000


Q ss_pred             CCCCCcccc---CCCCCCCCHhHHHHCCcEEEeCCcEEEEeCCCcEEEe-CCCeEEEeccEEeccCCCCCcCCCCCCCCc
Q 012165          110 RLPGFHTCV---GSGGERQTPEWYKEKGIEMIYQDPVTSIDIEKQTLIT-NSGKLLKYGSLIVATGCTASRFPEKIGGYL  185 (469)
Q Consensus       110 ~~~~~~~~~---~~~~~~~~~~~~~~~~i~~~~~~~v~~id~~~~~v~~-~~g~~~~yd~lVlAtG~~~~~~~~~~g~~~  185 (469)
                      +++.+....   ..........++++.+++++.+ ++..++  .+++.+ .+++.+.||+||+|||++|...|.++|.+ 
T Consensus        80 ~~~~~~~~~~~~~~~~~~~~~~~~~~~gv~~~~g-~~~~i~--~~~v~~~~~~~~~~~d~lviAtG~~p~~~p~i~G~~-  155 (463)
T 4dna_A           80 DWAKLVAAKEQEIARLEGLYRKGLANAGAEILDT-RAELAG--PNTVKLLASGKTVTAERIVIAVGGHPSPHDALPGHE-  155 (463)
T ss_dssp             CHHHHHHHHHHHHHHHHHHHHHHHHHHTCEEEES-CEEESS--SSEEEETTTTEEEEEEEEEECCCEEECCCTTSTTGG-
T ss_pred             CHHHHHHHHHHHHHHHHHHHHHHHHhCCCEEEEE-EEEEee--CCEEEEecCCeEEEeCEEEEecCCCcccCCCCCCcc-
Confidence            000000000   0000001223455679999986 666655  467777 57788999999999999886245545532 


Q ss_pred             CcEEEecCHHHHHHHHHhhhcCCeEEEEcCChHHHHHHHHHHhCCCeEe------------------eeHHHHHHcCcEE
Q 012165          186 PGVHYIRDVADADALISSLEKAKKVVVVGGGYIGMEVAAAAVGWKLDTT------------------RYEQLYQQNGVKF  247 (469)
Q Consensus       186 ~~v~~~~~~~~~~~~~~~~~~~~~vvVvG~G~~g~e~A~~l~~~g~~v~------------------~~~~~l~~~gV~~  247 (469)
                          ...+   .+.+......+++++|||+|++|+|+|..+.++|.+++                  .+.+.+++.||++
T Consensus       156 ----~~~~---~~~~~~~~~~~~~v~ViGgG~~g~e~A~~l~~~g~~Vt~v~~~~~~l~~~~~~~~~~l~~~l~~~Gv~i  228 (463)
T 4dna_A          156 ----LCIT---SNEAFDLPALPESILIAGGGYIAVEFANIFHGLGVKTTLIYRGKEILSRFDQDMRRGLHAAMEEKGIRI  228 (463)
T ss_dssp             ----GCBC---HHHHTTCSSCCSEEEEECCSHHHHHHHHHHHHTTCEEEEECSSSSSSTTSCHHHHHHHHHHHHHTTCEE
T ss_pred             ----cccc---HHHHhhhhcCCCeEEEECCCHHHHHHHHHHHHcCCeEEEEEcCCccccccCHHHHHHHHHHHHHCCCEE
Confidence                2222   33333333468999999999999999999999999887                  4456788999999


Q ss_pred             EcCCeEEEEEeCCCCcEEEEE-cCCCCEEeCCEEEEccCCccCCch--hhhcCCccc-CCCEEeCCCCCCCCCceEEecc
Q 012165          248 VKGASIKNLEAGSDGRVAAVK-LEDGSTIDADTIVIGIGAKPTVSP--FERVGLNSS-VGGIQVDGQFRTRMPGIFAIGD  323 (469)
Q Consensus       248 ~~~~~v~~i~~~~~~~v~~v~-~~~g~~i~~D~vi~a~G~~p~~~~--~~~~gl~~~-~g~i~Vd~~~~t~~~~Vfa~GD  323 (469)
                      ++++.|++++.++++.+ .|. +++|+ +++|.||+|+|++|++.+  ++.+|++.+ +|+|.||+++||++|+|||+||
T Consensus       229 ~~~~~v~~i~~~~~~~~-~v~~~~~g~-i~aD~Vv~a~G~~p~~~~l~l~~~g~~~~~~G~i~vd~~~~t~~~~iya~GD  306 (463)
T 4dna_A          229 LCEDIIQSVSADADGRR-VATTMKHGE-IVADQVMLALGRMPNTNGLGLEAAGVRTNELGAIIVDAFSRTSTPGIYALGD  306 (463)
T ss_dssp             ECSCCEEEEEECTTSCE-EEEESSSCE-EEESEEEECSCEEESCTTSSTGGGTCCBCTTSCBCCCTTCBCSSTTEEECSG
T ss_pred             ECCCEEEEEEEcCCCEE-EEEEcCCCe-EEeCEEEEeeCcccCCCCCCccccCceECCCCCEeECcCCCCCCCCEEEEEe
Confidence            99999999987545543 678 88997 999999999999999987  788899876 5789999999999999999999


Q ss_pred             ccccCCccCCcccccchHHHHHHHHHHHHHHHhcCCCC--CCCCCCceeeecccccCCCcceeeEEeecCCCc-------
Q 012165          324 VAAFPLKMYDRTARVEHVDHARQSAQHCIKALLSAQTH--TYDYLPYFYSRVFEYEGSPRKVWWQFFGDNVGE-------  394 (469)
Q Consensus       324 ~a~~~~~~~~~~~~~~~~~~A~~~a~~~a~~i~~~~~~--~~~~~p~~~~~~~~~~g~~~~~~~~~~G~~~~~-------  394 (469)
                      |+..+.          .+..|..+|+.+|+||++....  .+..+|+   ..|..+.      +..+|.++.+       
T Consensus       307 ~~~~~~----------~~~~A~~~g~~aa~~i~g~~~~~~~~~~~p~---~~~~~p~------~a~vG~te~~a~~~~~~  367 (463)
T 4dna_A          307 VTDRVQ----------LTPVAIHEAMCFIETEYKNNPTSPDHDLIAT---AVFSQPE------IGTVGITEEEAARKFQE  367 (463)
T ss_dssp             GGSSCC----------CHHHHHHHHHHHHHHHHSSCCCCCCCSCCCE---EECSSSC------EEEEECCHHHHHHHSSE
T ss_pred             cCCCCC----------ChHHHHHHHHHHHHHHcCCCCcccCCCCCCE---EEECCCC------eEEecCCHHHHHHcCCC
Confidence            998432          4456999999999999975433  3455564   3343221      5556654321       


Q ss_pred             EEE-Ec---c--------CCCcEEEEEEe--CCEEEEEEeecCChHHhHH-HHHHHhCCCCCCh--hhhcCCCcHHHHHH
Q 012165          395 TIE-IG---N--------FDPKIATFWID--SGKLKGVLVESGSPEEFQL-LPTLARSQPFVDK--AKLQQASSVEEALE  457 (469)
Q Consensus       395 ~~~-~~---~--------~~~~~~~~~~~--~~~l~g~~~~~~~~~~~~~-~~~~~~~~~~~~~--~~~~~~~~~~~~~~  457 (469)
                      ... ..   .        ....+.|+.++  +++|+|+++++.++.++.. +..+|+.+.+++.  ..++.|||+.|+++
T Consensus       368 ~~~~~~~~~~~~~~~~~~~~~~~~k~~~~~~~~~ilG~~~~g~~a~~~i~~~~~ai~~~~t~~~l~~~~~~hPt~~e~~~  447 (463)
T 4dna_A          368 IEVYRAEFRPMKATLSGRKEKTIMKLVVNAADRKVVGAHILGHDAGEMAQLLGISLRAGCTKDDFDRTMAVHPTAAEELV  447 (463)
T ss_dssp             EEEEEEEECCTTHHHHCCCCCEEEEEEEETTTCBEEEEEEESTTHHHHHHHHHHHHHTTCBHHHHHTSCCCTTCSGGGGT
T ss_pred             eEEEEEeccccchhhcCCCceEEEEEEEECCCCEEEEEEEECCCHHHHHHHHHHHHHCCCCHHHHhhcccCCCCHHHHHH
Confidence            111 10   0        11236777775  5999999998877766554 4556788887763  33578999999999


Q ss_pred             HHHhcC
Q 012165          458 IARAAL  463 (469)
Q Consensus       458 ~~~~~~  463 (469)
                      +++...
T Consensus       448 ~~~~~~  453 (463)
T 4dna_A          448 TMYQPS  453 (463)
T ss_dssp             CCCSCS
T ss_pred             HHhhhc
Confidence            887543

>3dk9_A Grase, GR, glutathione reductase; flavoenzyme, nicotinamide, acetylation, alternative initiation, cytoplasm, FAD, flavoprotein, mitochondrion, NADP; HET: SO4 FAD; 0.95A {Homo sapiens} PDB: 1bwc_A* 1gra_A* 1gre_A* 1grf_A* 1grh_A* 1grb_A* 2gh5_A* 1gsn_A* 3dk4_A* 3dk8_A* 3djj_A* 3grs_A* 3sqp_A* 4gr1_A* 2aaq_A* 1dnc_A* 1grg_A* 1grt_A* 1xan_A* 5grt_A* ...

Probab=100.00  E-value=3.4e-39  Score=329.97  Aligned_cols=378  Identities=20%  Similarity=0.221  Sum_probs=254.1

Q ss_pred             CCCCcEEEEcCcHHHHHHHHHHHHcCCCCCcEEEEcCCCCCCC--CC---CC--------C------cccccCCCCCCCC
Q 012165           49 NENREFVIVGGGNAAGYAARTFVEHGMADGRLCIVSKEAYAPY--ER---PA--------L------TKGYLFPLDKKPA  109 (469)
Q Consensus        49 ~~~~~vvIIGgG~AGl~aA~~L~~~g~~~~~V~vie~~~~~~~--~~---~~--------l------~~~~~~~~~~~~~  109 (469)
                      +.++||+|||||+||+++|..|++.|+   +|+|||++...+-  ..   |.        .      ...+.........
T Consensus        18 ~~~~dVvIIGgG~aGl~aA~~la~~G~---~V~liE~~~~GG~~~~~gc~p~k~l~~~~~~~~~~~~~~~~g~~~~~~~~   94 (478)
T 3dk9_A           18 VASYDYLVIGGGSGGLASARRAAELGA---RAAVVESHKLGGTCVNVGCVPKKVMWNTAVHSEFMHDHADYGFPSCEGKF   94 (478)
T ss_dssp             EEECSEEEECCSHHHHHHHHHHHHTTC---CEEEEESSCTTHHHHHHSHHHHHHHHHHHHHHHHHTTTTTTTSCCCCCCC
T ss_pred             CCCCCEEEECCCHHHHHHHHHHHhCCC---eEEEEecCCCCCcccccCccchHHHHHHHHHHHHHHHHHhcCccCCCCcc
Confidence            446899999999999999999999987   7999997742100  00   00        0      0000000000000


Q ss_pred             CCCCCcccc---CCCCCCCCHhHHHHCCcEEEeCCcEEEEeCCCcEEEeCCCeEEEeccEEeccCCCCCcCC--CCCCCC
Q 012165          110 RLPGFHTCV---GSGGERQTPEWYKEKGIEMIYQDPVTSIDIEKQTLITNSGKLLKYGSLIVATGCTASRFP--EKIGGY  184 (469)
Q Consensus       110 ~~~~~~~~~---~~~~~~~~~~~~~~~~i~~~~~~~v~~id~~~~~v~~~~g~~~~yd~lVlAtG~~~~~~~--~~~g~~  184 (469)
                      ++..+....   ...........++..+++++.+ ++..++.....|. .+++++.||+||||||++|..++  .++|..
T Consensus        95 ~~~~~~~~~~~~~~~~~~~~~~~~~~~gv~~~~g-~~~~~~~~~~~v~-~~g~~~~~d~lviAtG~~p~~p~~~~i~G~~  172 (478)
T 3dk9_A           95 NWRVIKEKRDAYVSRLNAIYQNNLTKSHIEIIRG-HAAFTSDPKPTIE-VSGKKYTAPHILIATGGMPSTPHESQIPGAS  172 (478)
T ss_dssp             CHHHHHHHHHHHHHHHHHHHHHHHHHTTCEEEES-CEEECSCSSCEEE-ETTEEEECSCEEECCCEEECCCCTTTSTTGG
T ss_pred             CHHHHHHHHHHHHHHHHHHHHHHHHhCCcEEEEe-EEEEeeCCeEEEE-ECCEEEEeeEEEEccCCCCCCCCcCCCCCCc
Confidence            000000000   0000001122345679999986 6777777777777 46677999999999999987431  444432


Q ss_pred             cCcEEEecCHHHHHHHHHhhhcCCeEEEEcCChHHHHHHHHHHhCCCeEe------------------eeHHHHHHcCcE
Q 012165          185 LPGVHYIRDVADADALISSLEKAKKVVVVGGGYIGMEVAAAAVGWKLDTT------------------RYEQLYQQNGVK  246 (469)
Q Consensus       185 ~~~v~~~~~~~~~~~~~~~~~~~~~vvVvG~G~~g~e~A~~l~~~g~~v~------------------~~~~~l~~~gV~  246 (469)
                           ...   +.+.+......+++++|||+|++|+|+|..|+++|.+|+                  .+.+.+++.||+
T Consensus       173 -----~~~---~~~~~~~~~~~~~~vvViGgG~~g~E~A~~l~~~g~~Vtlv~~~~~~l~~~d~~~~~~~~~~l~~~gv~  244 (478)
T 3dk9_A          173 -----LGI---TSDGFFQLEELPGRSVIVGAGYIAVEMAGILSALGSKTSLMIRHDKVLRSFDSMISTNCTEELENAGVE  244 (478)
T ss_dssp             -----GSB---CHHHHTTCCSCCSEEEEECCSHHHHHHHHHHHHTTCEEEEECSSSSSCTTSCHHHHHHHHHHHHHTTCE
T ss_pred             -----eeE---chHHhhchhhcCccEEEECCCHHHHHHHHHHHHcCCeEEEEEeCCccccccCHHHHHHHHHHHHHCCCE
Confidence                 122   233443334457999999999999999999999999988                  356778899999


Q ss_pred             EEcCCeEEEEEeCCCCcEEEEEcCC---C----CEEeCCEEEEccCCccCCc-h-hhhcCCccc-CCCEEeCCCCCCCCC
Q 012165          247 FVKGASIKNLEAGSDGRVAAVKLED---G----STIDADTIVIGIGAKPTVS-P-FERVGLNSS-VGGIQVDGQFRTRMP  316 (469)
Q Consensus       247 ~~~~~~v~~i~~~~~~~v~~v~~~~---g----~~i~~D~vi~a~G~~p~~~-~-~~~~gl~~~-~g~i~Vd~~~~t~~~  316 (469)
                      +++++.+++++..+++....+.+.+   |    +++++|.||+|+|++|+++ + ++.+|++.+ +|+|.||+++||++|
T Consensus       245 i~~~~~v~~i~~~~~~~~~~v~~~~~~~g~~~g~~~~~D~vi~a~G~~p~~~~l~l~~~g~~~~~~G~i~vd~~~~t~~~  324 (478)
T 3dk9_A          245 VLKFSQVKEVKKTLSGLEVSMVTAVPGRLPVMTMIPDVDCLLWAIGRVPNTKDLSLNKLGIQTDDKGHIIVDEFQNTNVK  324 (478)
T ss_dssp             EETTEEEEEEEECSSSEEEEEEECCTTSCCEEEEEEEESEEEECSCEEESCTTSCGGGGTCCBCTTCCBCCCTTCBCSST
T ss_pred             EEeCCEEEEEEEcCCCcEEEEEEccCCCCcccceEEEcCEEEEeeccccCCCCCCchhcCCeeCCCCCEeeCCCcccCCC
Confidence            9999999999875555233566765   2    5799999999999999987 4 788898875 678999999999999


Q ss_pred             ceEEeccccccCCccCCcccccchHHHHHHHHHHHHHHHhcCC-C--CCCCCCCceeeecccccCCCcceeeEEeecCCC
Q 012165          317 GIFAIGDVAAFPLKMYDRTARVEHVDHARQSAQHCIKALLSAQ-T--HTYDYLPYFYSRVFEYEGSPRKVWWQFFGDNVG  393 (469)
Q Consensus       317 ~Vfa~GD~a~~~~~~~~~~~~~~~~~~A~~~a~~~a~~i~~~~-~--~~~~~~p~~~~~~~~~~g~~~~~~~~~~G~~~~  393 (469)
                      +|||+|||+..+.          .+..|..+|+.+|++|++.. .  ..|..+|+   ..|..+.      +..+|.++.
T Consensus       325 ~IyA~GD~~~~~~----------~~~~A~~~g~~aa~~i~~~~~~~~~~~~~~p~---~~~~~p~------~a~vGlte~  385 (478)
T 3dk9_A          325 GIYAVGDVCGKAL----------LTPVAIAAGRKLAHRLFEYKEDSKLDYNNIPT---VVFSHPP------IGTVGLTED  385 (478)
T ss_dssp             TEEECGGGGCSSC----------CHHHHHHHHHHHHHHHHSCCTTCCCCCTTCCE---EECCSSC------EEEEECCHH
T ss_pred             CEEEEEecCCCCc----------cHhHHHHHHHHHHHHHcCCCCcccCCCCCCCe---EEECCCc------eEEeeCCHH
Confidence            9999999996443          34568999999999999752 2  34556664   3343221      455565432


Q ss_pred             c---------EEEE----c--------cCCCcEEEEEEe--CCEEEEEEeecCChHHhHH-HHHHHhCCCCCCh--hhhc
Q 012165          394 E---------TIEI----G--------NFDPKIATFWID--SGKLKGVLVESGSPEEFQL-LPTLARSQPFVDK--AKLQ  447 (469)
Q Consensus       394 ~---------~~~~----~--------~~~~~~~~~~~~--~~~l~g~~~~~~~~~~~~~-~~~~~~~~~~~~~--~~~~  447 (469)
                      +         ....    .        +....+.|++++  +++|+|+++++.++.++.. +..+|+.+.+++.  ..++
T Consensus       386 ~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~k~i~~~~~~~ilG~~~~g~~a~e~i~~~~~ai~~~~t~~~l~~~~~  465 (478)
T 3dk9_A          386 EAIHKYGIENVKTYSTSFTPMYHAVTKRKTKCVMKMVCANKEEKVVGIHMQGLGCDEMLQGFAVAVKMGATKADFDNTVA  465 (478)
T ss_dssp             HHHHHHCGGGEEEEEEEECCGGGGGCSSCCCEEEEEEEETTTTEEEEEEEESTTHHHHHHHHHHHHHTTCBHHHHHTSCC
T ss_pred             HHHhhCCCccEEEEEeecCcchhhhhcCCCcEEEEEEEECCCCEEEEEEEECCCHHHHHHHHHHHHHCCCCHHHHhhccc
Confidence            1         1110    0        011237777764  5999999998777766554 4556788887762  3357


Q ss_pred             CCCcHHHHHHH
Q 012165          448 QASSVEEALEI  458 (469)
Q Consensus       448 ~~~~~~~~~~~  458 (469)
                      .|||+.|++..
T Consensus       466 ~hPt~~e~~~~  476 (478)
T 3dk9_A          466 IHPTSSEELVT  476 (478)
T ss_dssp             CSSSSGGGGGS
T ss_pred             CCCChHHHHHh
Confidence            89999998864

>2vdc_G Glutamate synthase [NADPH] small chain; oxidoreductase, amidotransferase, ammonia assimilation, iron, zymogen; HET: OMT FMN AKG FAD; 9.50A {Azospirillum brasilense}

Probab=100.00  E-value=3.9e-40  Score=332.86  Aligned_cols=317  Identities=19%  Similarity=0.169  Sum_probs=228.2

Q ss_pred             cccccccccccccccc--CCCCcccccc---cCCccccccccccc------ccc---cCCCCCCcEEEEcCcHHHHHHHH
Q 012165            3 SVSNSLSFKHGLSLWC--PQSPSLHRIR---HSSAKNFQRRGFVV------AYS---SFANENREFVIVGGGNAAGYAAR   68 (469)
Q Consensus         3 ~~~~~~~~~~~~~~~~--~~~~~~~~~~---~~~~~~~~~~~~~~------~~~---~~~~~~~~vvIIGgG~AGl~aA~   68 (469)
                      .++||||.+|||+|++  +|+..|.+..   .++++..++++..+      +.+   +.....++|+|||||+||+++|.
T Consensus        60 ~~~n~~p~~~grvCp~~~~Ce~~C~~~~~~~~~v~I~~le~~~~~~~~~~~~~~~~~~~~~~~~~V~IIGgGpAGl~aA~  139 (456)
T 2vdc_G           60 QATNNFPEICGRICPQDRLCEGNCVIEQSTHGAVTIGSVEKYINDTAWDQGWVKPRTPSRELGLSVGVIGAGPAGLAAAE  139 (456)
T ss_dssp             HHHCSCHHHHHHHCCGGGSGGGGCGGGGSSSCSCCHHHHHHHHHHHHHHHTCCCCCCSCSSCCCCEEEECCSHHHHHHHH
T ss_pred             HhhCCCCccccccCCCCcchHHhcccCCCCCCCccHHHHHHHHHHHHHHcCCCCCCCCcCCCCCEEEEECCCHHHHHHHH
Confidence            4689999999999999  9999999874   67888877776532      111   22345789999999999999999


Q ss_pred             HHHHcCCCCCcEEEEcCCCCCCCCCCCCcccccCCCCCCCCCCCCCccccCCCCCCCCHhHHHHCCcEEEeCCcEEEEeC
Q 012165           69 TFVEHGMADGRLCIVSKEAYAPYERPALTKGYLFPLDKKPARLPGFHTCVGSGGERQTPEWYKEKGIEMIYQDPVTSIDI  148 (469)
Q Consensus        69 ~L~~~g~~~~~V~vie~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~v~~id~  148 (469)
                      .|++.|+   +|+|+|+.+.++..   +.  +-.+.    .+++.       ....+..+++++.+++++.++.+.    
T Consensus       140 ~L~~~G~---~V~v~e~~~~~GG~---l~--~gip~----~~~~~-------~~~~~~~~~l~~~gv~~~~~~~v~----  196 (456)
T 2vdc_G          140 ELRAKGY---EVHVYDRYDRMGGL---LV--YGIPG----FKLEK-------SVVERRVKLLADAGVIYHPNFEVG----  196 (456)
T ss_dssp             HHHHHTC---CEEEECSSSSCSTH---HH--HTSCT----TTSCH-------HHHHHHHHHHHHTTCEEETTCCBT----
T ss_pred             HHHHCCC---eEEEEeccCCCCCe---ee--ecCCC----ccCCH-------HHHHHHHHHHHHCCcEEEeCCEec----
Confidence            9999998   79999998764311   00  10110    01110       001233467788999999986542    


Q ss_pred             CCcEEEeCCCeEEEeccEEeccCCCCCcCCCCCCCCcCcEEEecCHHHHHHHH--H----------hhhcCCeEEEEcCC
Q 012165          149 EKQTLITNSGKLLKYGSLIVATGCTASRFPEKIGGYLPGVHYIRDVADADALI--S----------SLEKAKKVVVVGGG  216 (469)
Q Consensus       149 ~~~~v~~~~g~~~~yd~lVlAtG~~~~~~~~~~g~~~~~v~~~~~~~~~~~~~--~----------~~~~~~~vvVvG~G  216 (469)
                        +.++++++. +.||+||||||+.+...+.++|.+.+++++..++.......  .          ....+++|+|||+|
T Consensus       197 --~~v~~~~~~-~~~d~vvlAtG~~~~~~~~ipG~~~~gv~~a~~~l~~~~~~~~~~~~~~~~~g~~~~~gk~VvVIGgG  273 (456)
T 2vdc_G          197 --RDASLPELR-RKHVAVLVATGVYKARDIKAPGSGLGNIVAALDYLTTSNKVSLGDTVEAYENGSLNAAGKHVVVLGGG  273 (456)
T ss_dssp             --TTBCHHHHH-SSCSEEEECCCCCEECCTTCSCCTTTTEEEHHHHHHHHHHHHCTTTCSSCCTTCSCCCCSEEEEECSS
T ss_pred             --cEEEhhHhH-hhCCEEEEecCCCCCCCCCCCCCcCCCcEEHHHHHHHhhhhhcccccccccccccccCCCEEEEECCC
Confidence              223333332 57999999999974335667887788887654333222111  0          01357899999999


Q ss_pred             hHHHHHHHHHHhCCCe-Ee--------------eeHHHHHHcCcEEEcCCeEEEEEeCCCCcEEEEEc---------C--
Q 012165          217 YIGMEVAAAAVGWKLD-TT--------------RYEQLYQQNGVKFVKGASIKNLEAGSDGRVAAVKL---------E--  270 (469)
Q Consensus       217 ~~g~e~A~~l~~~g~~-v~--------------~~~~~l~~~gV~~~~~~~v~~i~~~~~~~v~~v~~---------~--  270 (469)
                      .+|+|+|..+.++|.+ |+              .-.+.+++.||++++++.+.++..  ++++.++++         .  
T Consensus       274 ~~a~d~A~~~~r~Ga~~Vtiv~r~~~~~~p~~~~e~~~~~~~Gv~~~~~~~~~~i~~--~g~v~~v~~~~~~~~~~d~~G  351 (456)
T 2vdc_G          274 DTAMDCVRTAIRQGATSVKCLYRRDRKNMPGSQREVAHAEEEGVEFIWQAAPEGFTG--DTVVTGVRAVRIHLGVADATG  351 (456)
T ss_dssp             HHHHHHHHHHHHTTCSEEEEECSSCSTTCSSCHHHHHHHHHTTCEEECCSSSCCEEE--EEEEETTEEEEEEEEEEEECT
T ss_pred             hhHHHHHHHHHHcCCCEEEEEEeCCccCCCCCHHHHHHHHHCCCEEEeCCCceEEeC--CCcEEEEEEEEEEecccCCcC
Confidence            9999999999999874 76              113457789999999999988874  343322222         1  


Q ss_pred             -------CC--CEEeCCEEEEccCCccCCc--hhhhcCCccc-CCCEEeCCC-CCCCCCceEEeccccccCCccCCcccc
Q 012165          271 -------DG--STIDADTIVIGIGAKPTVS--PFERVGLNSS-VGGIQVDGQ-FRTRMPGIFAIGDVAAFPLKMYDRTAR  337 (469)
Q Consensus       271 -------~g--~~i~~D~vi~a~G~~p~~~--~~~~~gl~~~-~g~i~Vd~~-~~t~~~~Vfa~GD~a~~~~~~~~~~~~  337 (469)
                             +|  +++++|.||+|+|+.|++.  ++++++++.+ +|+|.||++ ++|+.|+|||+|||+..+.        
T Consensus       352 ~~~~~~~~g~~~~i~aD~Vi~A~G~~p~~~~~~l~~~gl~~~~~G~i~vd~~~~~Ts~~~VfA~GD~~~g~~--------  423 (456)
T 2vdc_G          352 RQTPQVIEGSEFTVQADLVIKALGFEPEDLPNAFDEPELKVTRWGTLLVDHRTKMTNMDGVFAAGDIVRGAS--------  423 (456)
T ss_dssp             TCCEEEEEEEEEEEECSEEEECSCEECCCHHHHHHSTTSCBCTTSSBCCCTTTCBCSSTTEEECGGGGSSCC--------
T ss_pred             CccccccCCcEEEEECCEEEECCCCCCCcchhhcccCCeeECCCCCEEECCCCCcCCCCCEEEeccccCCch--------
Confidence                   23  4799999999999999876  7888888875 688999997 9999999999999997643        


Q ss_pred             cchHHHHHHHHHHHHHHHhc
Q 012165          338 VEHVDHARQSAQHCIKALLS  357 (469)
Q Consensus       338 ~~~~~~A~~~a~~~a~~i~~  357 (469)
                        .+..|+.+|+.+|.+|..
T Consensus       424 --~v~~A~~~G~~aA~~i~~  441 (456)
T 2vdc_G          424 --LVVWAIRDGRDAAEGIHA  441 (456)
T ss_dssp             --SHHHHHHHHHHHHHHHHH
T ss_pred             --HHHHHHHHHHHHHHHHHH
Confidence              455688899999988864

>3dgh_A TRXR-1, thioredoxin reductase 1, mitochondrial; oxidoreductase, rossmann, flavoprotein, alternative initiati mitochondrion, NADP; HET: FAD; 1.75A {Drosophila melanogaster} PDB: 2nvk_X* 3dh9_A*

Probab=100.00  E-value=2.4e-39  Score=331.50  Aligned_cols=381  Identities=20%  Similarity=0.245  Sum_probs=255.2

Q ss_pred             CCCCcEEEEcCcHHHHHHHHHHHHcCCCCCcEEEEcCCCCCC-------CCCCC-----Cc-c----------------c
Q 012165           49 NENREFVIVGGGNAAGYAARTFVEHGMADGRLCIVSKEAYAP-------YERPA-----LT-K----------------G   99 (469)
Q Consensus        49 ~~~~~vvIIGgG~AGl~aA~~L~~~g~~~~~V~vie~~~~~~-------~~~~~-----l~-~----------------~   99 (469)
                      +..+||+|||||+||++||..|++.|+   +|+|||+....+       +--..     .+ +                .
T Consensus         7 ~~~~DvvVIGgG~aGl~aA~~la~~G~---~V~liEk~~~~~~~~~~~~~GG~c~~~gciPsk~l~~~~~~~~~~~~~~~   83 (483)
T 3dgh_A            7 SYDYDLIVIGGGSAGLACAKEAVLNGA---RVACLDFVKPTPTLGTKWGVGGTCVNVGCIPKKLMHQASLLGEAVHEAAA   83 (483)
T ss_dssp             CCSEEEEEECCSHHHHHHHHHHHHTTC---CEEEECCCCCCTTTTCCCCSSCHHHHHSHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             CCCCCEEEECcCHHHHHHHHHHHHCCC---EEEEEEeccccccccccCCcCCeecccCchhhHHHHHHHHHHHHHHHHHh
Confidence            456899999999999999999999987   799999522110       00000     00 0                0


Q ss_pred             ccCCCCC-CCCCCCCCccccC---CCCCCCCHhHHHHCCcEEEeCCcEEEEeCCCcEEEeCCCe-EEEeccEEeccCCCC
Q 012165          100 YLFPLDK-KPARLPGFHTCVG---SGGERQTPEWYKEKGIEMIYQDPVTSIDIEKQTLITNSGK-LLKYGSLIVATGCTA  174 (469)
Q Consensus       100 ~~~~~~~-~~~~~~~~~~~~~---~~~~~~~~~~~~~~~i~~~~~~~v~~id~~~~~v~~~~g~-~~~yd~lVlAtG~~~  174 (469)
                      +-..... ...++..+.....   ..........++..+++++.+ .+..++.....|.+.+|. ++.||+||||||++|
T Consensus        84 ~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~g-~a~~~~~~~v~v~~~~g~~~~~~d~lviATGs~p  162 (483)
T 3dgh_A           84 YGWNVDDKIKPDWHKLVQSVQNHIKSVNWVTRVDLRDKKVEYING-LGSFVDSHTLLAKLKSGERTITAQTFVIAVGGRP  162 (483)
T ss_dssp             TTBCCCCCCCBCHHHHHHHHHHHHHHHHHHHHHHHHHTTCEEECS-EEEEEETTEEEEECTTCCEEEEEEEEEECCCEEE
T ss_pred             cCcccCCcCccCHHHHHHHHHHHHHHHHHHHHHHHHhCCCEEEEe-EEEEccCCEEEEEeCCCeEEEEcCEEEEeCCCCc
Confidence            0000000 0000000000000   000000112345679998875 667777766677777774 799999999999998


Q ss_pred             CcCCCCCCCCcCcEEEecCHHHHHHHHHhhhcCCeEEEEcCChHHHHHHHHHHhCCCeEe-----------------eeH
Q 012165          175 SRFPEKIGGYLPGVHYIRDVADADALISSLEKAKKVVVVGGGYIGMEVAAAAVGWKLDTT-----------------RYE  237 (469)
Q Consensus       175 ~~~~~~~g~~~~~v~~~~~~~~~~~~~~~~~~~~~vvVvG~G~~g~e~A~~l~~~g~~v~-----------------~~~  237 (469)
                      + .|.++|.+...    .+   ++.+......+++++|||+|++|+|+|..|.++|.+|+                 .+.
T Consensus       163 ~-~p~i~G~~~~~----~~---~~~~~~~~~~~~~vvViGgG~~g~E~A~~l~~~g~~Vtlv~~~~~l~~~d~~~~~~l~  234 (483)
T 3dgh_A          163 R-YPDIPGAVEYG----IT---SDDLFSLDREPGKTLVVGAGYIGLECAGFLKGLGYEPTVMVRSIVLRGFDQQMAELVA  234 (483)
T ss_dssp             C-CCSSTTHHHHC----BC---HHHHTTCSSCCCEEEEECCSHHHHHHHHHHHHTTCEEEEEESSCSSTTSCHHHHHHHH
T ss_pred             C-CCCCCCccccc----Cc---HHHHhhhhhcCCcEEEECCCHHHHHHHHHHHHcCCEEEEEeCCCCCcccCHHHHHHHH
Confidence            7 45555532111    12   33333333467899999999999999999999999987                 346


Q ss_pred             HHHHHcCcEEEcCCeEEEEEeCCCCcEEEEEcCCCC-----EEeCCEEEEccCCccCCchh--hhcCCcccCCCEEeCCC
Q 012165          238 QLYQQNGVKFVKGASIKNLEAGSDGRVAAVKLEDGS-----TIDADTIVIGIGAKPTVSPF--ERVGLNSSVGGIQVDGQ  310 (469)
Q Consensus       238 ~~l~~~gV~~~~~~~v~~i~~~~~~~v~~v~~~~g~-----~i~~D~vi~a~G~~p~~~~~--~~~gl~~~~g~i~Vd~~  310 (469)
                      +.+++.||++++++.+.+++..+++.+ .+.+.++.     ++++|.||+|+|++|+++++  +.+|++.+.|+|.||++
T Consensus       235 ~~l~~~Gv~i~~~~~v~~i~~~~~~~~-~v~~~~~~~~~~~~~~~D~vi~a~G~~p~~~~l~l~~~gl~~~~G~i~vd~~  313 (483)
T 3dgh_A          235 ASMEERGIPFLRKTVPLSVEKQDDGKL-LVKYKNVETGEESEDVYDTVLWAIGRKGLVDDLNLPNAGVTVQKDKIPVDSQ  313 (483)
T ss_dssp             HHHHHTTCCEEETEEEEEEEECTTSCE-EEEEEETTTCCEEEEEESEEEECSCEEECCGGGTGGGTTCCCBTTBBCCCTT
T ss_pred             HHHHhCCCEEEeCCEEEEEEEcCCCcE-EEEEecCCCCceeEEEcCEEEECcccccCcCcCCchhcCccccCCEEEECcC
Confidence            778899999999999999986545544 46666553     79999999999999999886  88888887788999999


Q ss_pred             CCCCCCceEEeccccccCCccCCcccccchHHHHHHHHHHHHHHHhcCCCC--CCCCCCceeeecccccCCCcceeeEEe
Q 012165          311 FRTRMPGIFAIGDVAAFPLKMYDRTARVEHVDHARQSAQHCIKALLSAQTH--TYDYLPYFYSRVFEYEGSPRKVWWQFF  388 (469)
Q Consensus       311 ~~t~~~~Vfa~GD~a~~~~~~~~~~~~~~~~~~A~~~a~~~a~~i~~~~~~--~~~~~p~~~~~~~~~~g~~~~~~~~~~  388 (469)
                      +||+.|+|||+|||+....         ..+..|..+|+.+|+||++....  .|..+|+.   .|..+      .+..+
T Consensus       314 ~~t~~~~IyA~GD~~~~~~---------~~~~~A~~~g~~aa~~i~g~~~~~~~~~~~p~~---~~~~p------~~a~v  375 (483)
T 3dgh_A          314 EATNVANIYAVGDIIYGKP---------ELTPVAVLAGRLLARRLYGGSTQRMDYKDVATT---VFTPL------EYACV  375 (483)
T ss_dssp             CBCSSTTEEECSTTBTTSC---------CCHHHHHHHHHHHHHHHHSCCCCCCCCTTCCEE---ECSSS------EEEEE
T ss_pred             CccCCCCEEEEEcccCCCC---------ccHHHHHHHHHHHHHHHcCCCCCcCCCCCCCEE---EECCC------ccEEE
Confidence            9999999999999984211         14556999999999999975432  45566753   23221      14445


Q ss_pred             ecCCC---------cEEE-Ec------------cCCCcEEEEEEe---CCEEEEEEeecCChHHhHH-HHHHHhCCCCCC
Q 012165          389 GDNVG---------ETIE-IG------------NFDPKIATFWID---SGKLKGVLVESGSPEEFQL-LPTLARSQPFVD  442 (469)
Q Consensus       389 G~~~~---------~~~~-~~------------~~~~~~~~~~~~---~~~l~g~~~~~~~~~~~~~-~~~~~~~~~~~~  442 (469)
                      |.+..         .... ..            .....|.|+.++   +++|+|+++++.++.++.. +..+|+.+.+++
T Consensus       376 Glte~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~i~~~~~~~~ilG~~~~g~~a~e~i~~~~~ai~~~~t~~  455 (483)
T 3dgh_A          376 GLSEEDAVKQFGADEIEVFHGYYKPTEFFIPQKSVRYCYLKAVAERHGDQRVYGLHYIGPVAGEVIQGFAAALKSGLTIN  455 (483)
T ss_dssp             ECCHHHHHHHHCGGGEEEEEEECCCGGGTTTTCCCTTCEEEEEEESSTTCBEEEEEEEETTHHHHHHHHHHHHHTTCBHH
T ss_pred             eCCHHHHHhhCCCCCEEEEEEeecchhhhhhccCCCcEEEEEEEecCCCCEEEEEEEECCCHHHHHHHHHHHHHCCCCHH
Confidence            54421         0111 10            011237777764   4899999998887766554 455678888776


Q ss_pred             h--hhhcCCCcHHHHHHHHH
Q 012165          443 K--AKLQQASSVEEALEIAR  460 (469)
Q Consensus       443 ~--~~~~~~~~~~~~~~~~~  460 (469)
                      .  ..++.|||++|++..+.
T Consensus       456 ~l~~~~~~hPt~~e~~~~~~  475 (483)
T 3dgh_A          456 TLINTVGIHPTTAEEFTRLA  475 (483)
T ss_dssp             HHHTSCCCSSCSGGGGGGCC
T ss_pred             HHhhcccCCCChHHHHHHHH
Confidence            3  33578999999988755

>4b1b_A TRXR, thioredoxin reductase; oxidoreductase, FAD, NADPH, thiol-mediated redox metabolism, pyridine nucleotide-disulfide oxidoreductase; HET: FAD; 2.90A {Plasmodium falciparum}

Probab=100.00  E-value=2.9e-39  Score=331.60  Aligned_cols=382  Identities=18%  Similarity=0.224  Sum_probs=239.1

Q ss_pred             CCcEEEEcCcHHHHHHHHHHHHcCCCCCcEEEEcCCCCCCCC-CCCC-----------cccccC----------CC----
Q 012165           51 NREFVIVGGGNAAGYAARTFVEHGMADGRLCIVSKEAYAPYE-RPAL-----------TKGYLF----------PL----  104 (469)
Q Consensus        51 ~~~vvIIGgG~AGl~aA~~L~~~g~~~~~V~vie~~~~~~~~-~~~l-----------~~~~~~----------~~----  104 (469)
                      .||++|||||+||++||.++++.|.   +|+|||+.....+. +..+           +|.++.          ..    
T Consensus        42 dYDviVIG~GpaG~~aA~~aa~~G~---kValIE~~~~~~~~~k~~lGGtCln~GCIPsK~L~~aa~~~~~~~~~~~~~G  118 (542)
T 4b1b_A           42 DYDYVVIGGGPGGMASAKEAAAHGA---RVLLFDYVKPSSQGTKWGIGGTCVNVGCVPKKLMHYAGHMGSIFKLDSKAYG  118 (542)
T ss_dssp             SEEEEEECCSHHHHHHHHHHHTTTC---CEEEECCCCCCTTCCCCCSSHHHHHHSHHHHHHHHHHHHHHHHHHHTGGGGT
T ss_pred             CCCEEEECCCHHHHHHHHHHHHCCC---eEEEEeccccccccccCCCCCcccccchHHHHHHHHHHHHHHHHHhhhHhcC
Confidence            4899999999999999999999987   79999976532211 0001           111100          00    


Q ss_pred             ---CCCCCCCCCCccccC---CCCCCCCHhHHHHCCcEEEeCCcEEEEeCCCcEEEeC----CCeEEEeccEEeccCCCC
Q 012165          105 ---DKKPARLPGFHTCVG---SGGERQTPEWYKEKGIEMIYQDPVTSIDIEKQTLITN----SGKLLKYGSLIVATGCTA  174 (469)
Q Consensus       105 ---~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~i~~~~~~~v~~id~~~~~v~~~----~g~~~~yd~lVlAtG~~~  174 (469)
                         .....+++.+.....   ..........+++.+|+++.+ ...-+++..-.|...    +++++.+|++|||||++|
T Consensus       119 i~~~~~~~d~~~~~~~~~~~v~~l~~~~~~~l~~~~V~~i~G-~a~f~~~~~v~V~~~~~~~~~~~i~a~~iiIATGs~P  197 (542)
T 4b1b_A          119 WKFDNLKHDWKKLVTTVQSHIRSLNFSYMTGLRSSKVKYING-LAKLKDKNTVSYYLKGDLSKEETVTGKYILIATGCRP  197 (542)
T ss_dssp             EEEEEEEECHHHHHHHHHHHHHHHHHHHHHHHHHTTCEEECE-EEEEEETTEEEEEEC--CCCEEEEEEEEEEECCCEEE
T ss_pred             cccCcccccHHHHHHHHHHHHHHHHHHHHHHHHhCCCEEEee-eEEEcCCCcceEeecccCCceEEEeeeeEEeccCCCC
Confidence               000000000000000   000001123356789999876 555566544444333    345799999999999999


Q ss_pred             CcCCCCCCCCcCcEEEecCHHHHHHHHHhhhcCCeEEEEcCChHHHHHHHHHHhCCCeEe-----------------eeH
Q 012165          175 SRFPEKIGGYLPGVHYIRDVADADALISSLEKAKKVVVVGGGYIGMEVAAAAVGWKLDTT-----------------RYE  237 (469)
Q Consensus       175 ~~~~~~~g~~~~~v~~~~~~~~~~~~~~~~~~~~~vvVvG~G~~g~e~A~~l~~~g~~v~-----------------~~~  237 (469)
                      ..+|.+++. ...+      .+++.++.....+++++|||||++|+|+|..++++|.+|+                 .+.
T Consensus       198 ~~P~~~~~~-~~~~------~ts~~~l~l~~lP~~lvIIGgG~IGlE~A~~~~~lG~~VTii~~~~~L~~~D~ei~~~l~  270 (542)
T 4b1b_A          198 HIPDDVEGA-KELS------ITSDDIFSLKKDPGKTLVVGASYVALECSGFLNSLGYDVTVAVRSIVLRGFDQQCAVKVK  270 (542)
T ss_dssp             CCCSSSBTH-HHHC------BCHHHHTTCSSCCCSEEEECCSHHHHHHHHHHHHHTCCEEEEESSCSSTTSCHHHHHHHH
T ss_pred             CCCCcccCC-Cccc------cCchhhhccccCCceEEEECCCHHHHHHHHHHHhcCCeEEEecccccccccchhHHHHHH
Confidence            754432221 1111      1355555555678999999999999999999999999998                 567


Q ss_pred             HHHHHcCcEEEcCCeEEEEEeCCCCcEEEEEcCCCCEEeCCEEEEccCCccCCch--hhhcCCccc-CCC-EEeCCCCCC
Q 012165          238 QLYQQNGVKFVKGASIKNLEAGSDGRVAAVKLEDGSTIDADTIVIGIGAKPTVSP--FERVGLNSS-VGG-IQVDGQFRT  313 (469)
Q Consensus       238 ~~l~~~gV~~~~~~~v~~i~~~~~~~v~~v~~~~g~~i~~D~vi~a~G~~p~~~~--~~~~gl~~~-~g~-i~Vd~~~~t  313 (469)
                      +.|++.||+++++..+++++.. ++.+ .+.+.+++++.+|.|++|+|++||++.  ++.+++..+ .++ +.||+++||
T Consensus       271 ~~l~~~gi~~~~~~~v~~~~~~-~~~~-~v~~~~~~~~~~D~vLvAvGR~Pnt~~L~le~~gv~~~~~~~~i~vd~~~~T  348 (542)
T 4b1b_A          271 LYMEEQGVMFKNGILPKKLTKM-DDKI-LVEFSDKTSELYDTVLYAIGRKGDIDGLNLESLNMNVNKSNNKIIADHLSCT  348 (542)
T ss_dssp             HHHHHTTCEEEETCCEEEEEEE-TTEE-EEEETTSCEEEESEEEECSCEEESCGGGCGGGTTCCEETTTTEECCCTTSBC
T ss_pred             HHHHhhcceeecceEEEEEEec-CCeE-EEEEcCCCeEEEEEEEEcccccCCccccCcccceeeecccCceEeccccccc
Confidence            8899999999999999999865 3333 578889999999999999999999986  566777765 344 578899999


Q ss_pred             CCCceEEecccccc-CCccCCcccccchHHHHHHHHHHHHHHHhcCCCC--CCCCCCceeeecccccCCCcceeeEEeec
Q 012165          314 RMPGIFAIGDVAAF-PLKMYDRTARVEHVDHARQSAQHCIKALLSAQTH--TYDYLPYFYSRVFEYEGSPRKVWWQFFGD  390 (469)
Q Consensus       314 ~~~~Vfa~GD~a~~-~~~~~~~~~~~~~~~~A~~~a~~~a~~i~~~~~~--~~~~~p~~~~~~~~~~g~~~~~~~~~~G~  390 (469)
                      ++|+|||+|||+.. |.        ..|  .|..+|+.++++|++....  .|..+|+   ..|..+-      +..+|.
T Consensus       349 s~p~IyAiGDv~~~~p~--------La~--~A~~eg~~aa~~i~g~~~~~~d~~~iP~---~vft~Pe------iA~VGl  409 (542)
T 4b1b_A          349 NIPSIFAVGDVAENVPE--------LAP--VAIKAGEILARRLFKDSDEIMDYSYIPT---SIYTPIE------YGACGY  409 (542)
T ss_dssp             SSTTEEECTTSBTTCCC--------CHH--HHHHHHHHHHHHHHSCCCCCCCCSSCCE---EECSSSC------EEEEEC
T ss_pred             cCCCeEEeccccCCchh--------HHH--HHHHHHHHHHHHHhcCCCcccCCCCCce---EEeCCCC------eEEEeC
Confidence            99999999999964 22        223  4889999999999975543  4566775   3444332      444444


Q ss_pred             CCCc---------E-EEE--------------------------ccCCCcEEEEEE-e--CCEEEEEEeecCChHHhHHH
Q 012165          391 NVGE---------T-IEI--------------------------GNFDPKIATFWI-D--SGKLKGVLVESGSPEEFQLL  431 (469)
Q Consensus       391 ~~~~---------~-~~~--------------------------~~~~~~~~~~~~-~--~~~l~g~~~~~~~~~~~~~~  431 (469)
                      ++.+         + +..                          ......|.|+.. +  +++|+|+++++.++.++...
T Consensus       410 TE~eA~~~g~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~vKli~~~~~t~~ILGa~ivG~~A~ElI~~  489 (542)
T 4b1b_A          410 SEEKAYELYGKSNVEVFLQEFNNLEISAVHRQKHIRAQKDEYDLDVSSTCLAKLVCLKNEDNRVIGFHYVGPNAGEVTQG  489 (542)
T ss_dssp             CHHHHHHHHCTTTEEEEEC-----------------------------CCCEEEEEETTTTTBEEEEEEESTTHHHHHHH
T ss_pred             CHHHHHHhCCCCcEEEEEeeccchhhhhhhhhhhhhcccccccccCCCceEEEEEEEeCCCCEEEEEEEECCCHHHHHHH
Confidence            3210         0 000                          000123556553 3  58999999988888776655


Q ss_pred             H-HHHhCCCCCCh--hhhcCCCcHHHHHHHHHhcCC
Q 012165          432 P-TLARSQPFVDK--AKLQQASSVEEALEIARAALP  464 (469)
Q Consensus       432 ~-~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~  464 (469)
                      - -+|+.+.+++.  ..++.|||++|+++++..++.
T Consensus       490 ~alAi~~~~t~~dl~~~i~~HPTlsE~l~~~~~t~~  525 (542)
T 4b1b_A          490 MALALRLKVKKKDFDNCIGIHPTDAESFMNLFVTIS  525 (542)
T ss_dssp             HHHHHHTCCBHHHHHHC-------------------
T ss_pred             HHHHHHcCCCHHHHhccCCcCCCHHHHHHHHHHHHH
Confidence            4 45688877763  335789999999999987654

>3dgz_A Thioredoxin reductase 2; oxidoreductase, rossmann, flavoprotein, FAD, mitochondrion, redox-active center, selenium, selenocysteine, transit PEPT; HET: FAD NA7; 2.25A {Mus musculus} PDB: 1zkq_A* 1zdl_A*

Probab=100.00  E-value=3.6e-38  Score=323.03  Aligned_cols=381  Identities=19%  Similarity=0.231  Sum_probs=254.8

Q ss_pred             CCCcEEEEcCcHHHHHHHHHHHHcCCCCCcEEEEcCCCCCCCC-CCCCccc----------cc---------------CC
Q 012165           50 ENREFVIVGGGNAAGYAARTFVEHGMADGRLCIVSKEAYAPYE-RPALTKG----------YL---------------FP  103 (469)
Q Consensus        50 ~~~~vvIIGgG~AGl~aA~~L~~~g~~~~~V~vie~~~~~~~~-~~~l~~~----------~~---------------~~  103 (469)
                      .++||+|||||+||++||..|++.|.   +|+|||+.+..++. +..+-..          .+               ++
T Consensus         5 ~~~DvvVIG~G~aGl~aA~~la~~G~---~V~liEk~~~~~~~~~~~~GGtc~~~gciPsk~l~~~~~~~~~~~~~~~~g   81 (488)
T 3dgz_A            5 QSFDLLVIGGGSGGLACAKEAAQLGK---KVAVADYVEPSPRGTKWGLGGTCVNVGCIPKKLMHQAALLGGMIRDAHHYG   81 (488)
T ss_dssp             CEEEEEEECCSHHHHHHHHHHHHTTC---CEEEECCCCCCTTSCCCCTTCHHHHHSHHHHHHHHHHHHHHHHHHHHHHTT
T ss_pred             CcCCEEEECCCHHHHHHHHHHHhCCC---eEEEEEecccccccccCCcCCeecccCCcccHHHHHHHHHHHHHHHHHhcC
Confidence            45899999999999999999999987   79999974322211 0000000          00               00


Q ss_pred             CC---CCCCCCCCCcccc---CCCCCCCCHhHHHHCCcEEEeCCcEEEEeCCCcEEEeCCC--eEEEeccEEeccCCCCC
Q 012165          104 LD---KKPARLPGFHTCV---GSGGERQTPEWYKEKGIEMIYQDPVTSIDIEKQTLITNSG--KLLKYGSLIVATGCTAS  175 (469)
Q Consensus       104 ~~---~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~i~~~~~~~v~~id~~~~~v~~~~g--~~~~yd~lVlAtG~~~~  175 (469)
                      ..   ....++..+....   ...........++..+++++.+ .+..+++....|.+.+|  .++.||+||||||++|.
T Consensus        82 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~i~g-~~~~~~~~~v~v~~~~g~~~~~~~d~lViATGs~p~  160 (488)
T 3dgz_A           82 WEVAQPVQHNWKTMAEAVQNHVKSLNWGHRVQLQDRKVKYFNI-KASFVDEHTVRGVDKGGKATLLSAEHIVIATGGRPR  160 (488)
T ss_dssp             CCCCSSCCCCHHHHHHHHHHHHHHHHHHHHHHHHHTTCEEECC-EEEESSSSEEEEECTTSCEEEEEEEEEEECCCEEEC
T ss_pred             cccCCcCccCHHHHHHHHHHHHHHHHHHHHHHHHhCCCEEEEE-EEEEccCCeEEEEeCCCceEEEECCEEEEcCCCCCC
Confidence            00   0000000000000   0000000112345679998875 67777776667777777  47999999999999987


Q ss_pred             cCCC-CCCCCcCcEEEecCHHHHHHHHHhhhcCCeEEEEcCChHHHHHHHHHHhCCCeEe-----------------eeH
Q 012165          176 RFPE-KIGGYLPGVHYIRDVADADALISSLEKAKKVVVVGGGYIGMEVAAAAVGWKLDTT-----------------RYE  237 (469)
Q Consensus       176 ~~~~-~~g~~~~~v~~~~~~~~~~~~~~~~~~~~~vvVvG~G~~g~e~A~~l~~~g~~v~-----------------~~~  237 (469)
                      . |. ++|.+.. .   .+   ++.+......+++++|||+|++|+|+|..|+++|.+|+                 .+.
T Consensus       161 ~-p~~i~G~~~~-~---~~---~~~~~~~~~~~~~vvViGgG~ig~E~A~~l~~~g~~Vtlv~~~~~l~~~d~~~~~~l~  232 (488)
T 3dgz_A          161 Y-PTQVKGALEY-G---IT---SDDIFWLKESPGKTLVVGASYVALECAGFLTGIGLDTTVMMRSIPLRGFDQQMSSLVT  232 (488)
T ss_dssp             C-CSSCBTHHHH-C---BC---HHHHTTCSSCCCSEEEECCSHHHHHHHHHHHHTTCCEEEEESSCSSTTSCHHHHHHHH
T ss_pred             C-CCCCCCcccc-c---Cc---HHHHHhhhhcCCeEEEECCCHHHHHHHHHHHHcCCceEEEEcCcccccCCHHHHHHHH
Confidence            4 54 5553211 1   12   33333333467899999999999999999999999987                 456


Q ss_pred             HHHHHcCcEEEcCCeEEEEEeCCCCcEEEEEcCC---CC--EEeCCEEEEccCCccCCch--hhhcCCccc--CCCEEeC
Q 012165          238 QLYQQNGVKFVKGASIKNLEAGSDGRVAAVKLED---GS--TIDADTIVIGIGAKPTVSP--FERVGLNSS--VGGIQVD  308 (469)
Q Consensus       238 ~~l~~~gV~~~~~~~v~~i~~~~~~~v~~v~~~~---g~--~i~~D~vi~a~G~~p~~~~--~~~~gl~~~--~g~i~Vd  308 (469)
                      +.+++.||++++++.+++++..+++.+ .+.+.+   |+  ++++|.||+++|++|++++  ++..++..+  +|+|.||
T Consensus       233 ~~l~~~gv~~~~~~~v~~i~~~~~~~~-~v~~~~~~~g~~~~~~~D~vi~a~G~~p~~~~l~l~~~g~~~~~~~G~i~vd  311 (488)
T 3dgz_A          233 EHMESHGTQFLKGCVPSHIKKLPTNQL-QVTWEDHASGKEDTGTFDTVLWAIGRVPETRTLNLEKAGISTNPKNQKIIVD  311 (488)
T ss_dssp             HHHHHTTCEEEETEEEEEEEECTTSCE-EEEEEETTTTEEEEEEESEEEECSCEEESCGGGTGGGGTCCBCSSSCCBCCC
T ss_pred             HHHHHCCCEEEeCCEEEEEEEcCCCcE-EEEEEeCCCCeeEEEECCEEEEcccCCcccCcCCccccCcEecCCCCeEeEC
Confidence            778899999999999999986444443 354443   54  4799999999999999987  678888875  5789999


Q ss_pred             CCCCCCCCceEEeccccccCCccCCcccccchHHHHHHHHHHHHHHHhcCCCC--CCCCCCceeeecccccCCCcceeeE
Q 012165          309 GQFRTRMPGIFAIGDVAAFPLKMYDRTARVEHVDHARQSAQHCIKALLSAQTH--TYDYLPYFYSRVFEYEGSPRKVWWQ  386 (469)
Q Consensus       309 ~~~~t~~~~Vfa~GD~a~~~~~~~~~~~~~~~~~~A~~~a~~~a~~i~~~~~~--~~~~~p~~~~~~~~~~g~~~~~~~~  386 (469)
                      +++||++|+|||+|||+....         ..+..|..+|+.+|+||++....  .+..+|+.   .|..+      .+.
T Consensus       312 ~~~~t~~~~IyA~GD~~~~~~---------~~~~~A~~~g~~aa~~i~g~~~~~~~~~~~p~~---~~~~p------~~a  373 (488)
T 3dgz_A          312 AQEATSVPHIYAIGDVAEGRP---------ELTPTAIKAGKLLAQRLFGKSSTLMDYSNVPTT---VFTPL------EYG  373 (488)
T ss_dssp             TTSBCSSTTEEECGGGBTTCC---------CCHHHHHHHHHHHHHHHHSCCCCCCCCTTCCEE---ECSSS------EEE
T ss_pred             CCCccCCCCEEEeEEecCCCC---------cchhHHHHHHHHHHHHHcCCCCccCCCCCCCEE---EECCC------CeE
Confidence            999999999999999985211         14556999999999999975433  45566753   23222      145


Q ss_pred             EeecCCC---------cEEE-Ecc------------CCCcEEEEEEe---CCEEEEEEeecCChHHhHH-HHHHHhCCCC
Q 012165          387 FFGDNVG---------ETIE-IGN------------FDPKIATFWID---SGKLKGVLVESGSPEEFQL-LPTLARSQPF  440 (469)
Q Consensus       387 ~~G~~~~---------~~~~-~~~------------~~~~~~~~~~~---~~~l~g~~~~~~~~~~~~~-~~~~~~~~~~  440 (469)
                      .+|.+..         .... ...            ....+.|+.++   +++|+|+++++.++.++.. +..+|+.+.+
T Consensus       374 ~vGlte~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~k~i~~~~~~~~ilG~~~~g~~a~e~i~~~~~ai~~~~t  453 (488)
T 3dgz_A          374 CVGLSEEEAVALHGQEHVEVYHAYYKPLEFTVADRDASQCYIKMVCMREPPQLVLGLHFLGPNAGEVTQGFALGIKCGAS  453 (488)
T ss_dssp             EEECCHHHHHHHHCGGGEEEEEEECCCHHHHHTTCCCTTCEEEEEEESSTTCBEEEEEEEETTHHHHHHHHHHHHHTTCB
T ss_pred             EEeCCHHHHHhhCCCCcEEEEEccccchhhhhhccCCCcEEEEEEEecCCCCEEEEEEEECCCHHHHHHHHHHHHHCCCC
Confidence            5554431         1111 100            02347777775   4999999998887766554 4556788887


Q ss_pred             CCh--hhhcCCCcHHHHHHHHHh
Q 012165          441 VDK--AKLQQASSVEEALEIARA  461 (469)
Q Consensus       441 ~~~--~~~~~~~~~~~~~~~~~~  461 (469)
                      ++.  ..++.|||++|++..+..
T Consensus       454 ~~~l~~~~~~hPt~~e~~~~~~~  476 (488)
T 3dgz_A          454 YAQVMQTVGIHPTCSEEVVKLHI  476 (488)
T ss_dssp             HHHHHTSCCCSSCSTHHHHTCCE
T ss_pred             HHHHhccccCCCChHHHHHHHHH
Confidence            763  335789999999987653

>3ic9_A Dihydrolipoamide dehydrogenase; APC62701, colwellia psychrer 34H, structural genomics, PSI-2; HET: FAD; 2.15A {Colwellia psychrerythraea}

Probab=100.00  E-value=1.7e-38  Score=325.30  Aligned_cols=381  Identities=18%  Similarity=0.157  Sum_probs=249.3

Q ss_pred             CCCcEEEEcCcHHHHHHHHHHHHcCCCCCcEEEEcCCCCCCCC--CCCC-cccccCCC--CCCCCCCCCC--c----ccc
Q 012165           50 ENREFVIVGGGNAAGYAARTFVEHGMADGRLCIVSKEAYAPYE--RPAL-TKGYLFPL--DKKPARLPGF--H----TCV  118 (469)
Q Consensus        50 ~~~~vvIIGgG~AGl~aA~~L~~~g~~~~~V~vie~~~~~~~~--~~~l-~~~~~~~~--~~~~~~~~~~--~----~~~  118 (469)
                      .++||+|||||+||++||..|++.|.   +|+|||+++.-+-.  +... ++.++...  .....+++.+  .    ...
T Consensus         7 ~~~DvvVIGgG~aGl~aA~~la~~G~---~V~liE~~~~GGtc~~~gciPsk~l~~~a~~~~~~~~~~~~g~~~~~~~~~   83 (492)
T 3ic9_A            7 INVDVAIIGTGTAGMGAYRAAKKHTD---KVVLIEGGAYGTTCARVGCMPSKLLIAAADASYHASQTDLFGIQVDRISVN   83 (492)
T ss_dssp             EEEEEEEECCSHHHHHHHHHHHTTCS---CEEEEESSCSSCHHHHHSHHHHHHHHHHHHHHHHHTCGGGGTEECSEEEEC
T ss_pred             CCCCEEEECCCHHHHHHHHHHHhCCC---cEEEEeCCCCCCcccccChhcCHHHHHHHHHHHHHhhhhhcCcCCCCCccC
Confidence            35899999999999999999999987   79999997521100  0000 00000000  0000000000  0    000


Q ss_pred             CCCCCCCCH-----------hHHHHC-CcEEEeCCcEEEEeCCCcEEEeCCCeEEEeccEEeccCCCCCcCCCCCCCCcC
Q 012165          119 GSGGERQTP-----------EWYKEK-GIEMIYQDPVTSIDIEKQTLITNSGKLLKYGSLIVATGCTASRFPEKIGGYLP  186 (469)
Q Consensus       119 ~~~~~~~~~-----------~~~~~~-~i~~~~~~~v~~id~~~~~v~~~~g~~~~yd~lVlAtG~~~~~~~~~~g~~~~  186 (469)
                      ......+..           ..+... +++++.+ .....+  .++|.+.+++++.||+||||||++|. .|++++...+
T Consensus        84 ~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~g-~a~~~~--~~~v~~~~~~~~~~d~lViATGs~p~-~p~~~~~~~~  159 (492)
T 3ic9_A           84 GKAVMKRIQTERDRFVGFVVESVESFDEQDKIRG-FAKFLD--EHTLQVDDHSQVIAKRIVIATGSRPN-YPEFLAAAGS  159 (492)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHSCGGGEEES-CEEEEE--TTEEEETTTEEEEEEEEEECCCEECC-CCHHHHTTGG
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHhhcCeeEEEE-EEEEec--CCEEEEcCCcEEEeCEEEEccCCCCc-CCCCCCccCC
Confidence            000000000           111111 3445554 333333  56888888889999999999999987 4543333233


Q ss_pred             cEEEecCHHHHHHHHHhhhcCCeEEEEcCChHHHHHHHHHHhCCCeEe------------------eeHHHHHHcCcEEE
Q 012165          187 GVHYIRDVADADALISSLEKAKKVVVVGGGYIGMEVAAAAVGWKLDTT------------------RYEQLYQQNGVKFV  248 (469)
Q Consensus       187 ~v~~~~~~~~~~~~~~~~~~~~~vvVvG~G~~g~e~A~~l~~~g~~v~------------------~~~~~l~~~gV~~~  248 (469)
                      .+++      ++.+......+++++|||+|++|+|+|..|.++|.+|+                  .+.+.+++. |+++
T Consensus       160 ~v~t------~~~~~~~~~~~k~vvViGgG~ig~E~A~~l~~~g~~Vtlv~~~~~~l~~~d~~~~~~l~~~l~~~-V~i~  232 (492)
T 3ic9_A          160 RLLT------NDNLFELNDLPKSVAVFGPGVIGLELGQALSRLGVIVKVFGRSGSVANLQDEEMKRYAEKTFNEE-FYFD  232 (492)
T ss_dssp             GEEC------HHHHTTCSSCCSEEEEESSCHHHHHHHHHHHHTTCEEEEECCTTCCTTCCCHHHHHHHHHHHHTT-SEEE
T ss_pred             cEEc------HHHHhhhhhcCCeEEEECCCHHHHHHHHHHHHcCCeEEEEEECCcccccCCHHHHHHHHHHHhhC-cEEE
Confidence            4433      33333334568999999999999999999999999988                  345667677 9999


Q ss_pred             cCCeEEEEEeCCCCcEEEEEcC--CC--CEEeCCEEEEccCCccCCch--hhhcCCccc-CCCEEeC-CCCCCCCCceEE
Q 012165          249 KGASIKNLEAGSDGRVAAVKLE--DG--STIDADTIVIGIGAKPTVSP--FERVGLNSS-VGGIQVD-GQFRTRMPGIFA  320 (469)
Q Consensus       249 ~~~~v~~i~~~~~~~v~~v~~~--~g--~~i~~D~vi~a~G~~p~~~~--~~~~gl~~~-~g~i~Vd-~~~~t~~~~Vfa  320 (469)
                      +++.+++++..++ .+ .+.+.  +|  +++++|.||+|+|++|++++  ++.+|++.+ +|+|.|| +++||+.|+|||
T Consensus       233 ~~~~v~~i~~~~~-~v-~v~~~~~~G~~~~i~~D~Vi~a~G~~p~~~~l~l~~~gl~~~~~G~i~vd~~~~~t~~~~IyA  310 (492)
T 3ic9_A          233 AKARVISTIEKED-AV-EVIYFDKSGQKTTESFQYVLAATGRKANVDKLGLENTSIELDKKNSPLFDELTLQTSVDHIFV  310 (492)
T ss_dssp             TTCEEEEEEECSS-SE-EEEEECTTCCEEEEEESEEEECSCCEESCSSSCGGGSCCCBCTTCCBCCCTTTCBCSSTTEEE
T ss_pred             ECCEEEEEEEcCC-EE-EEEEEeCCCceEEEECCEEEEeeCCccCCCCCChhhcCCEECCCCCEeECcccccCCCCCEEE
Confidence            9999999986533 33 35553  67  68999999999999999988  788899876 6789999 899999999999


Q ss_pred             eccccccCCccCCcccccchHHHHHHHHHHHHHHHhcC-CCC--CCCCCCceeeecccccCCCcceeeEEeecCCC----
Q 012165          321 IGDVAAFPLKMYDRTARVEHVDHARQSAQHCIKALLSA-QTH--TYDYLPYFYSRVFEYEGSPRKVWWQFFGDNVG----  393 (469)
Q Consensus       321 ~GD~a~~~~~~~~~~~~~~~~~~A~~~a~~~a~~i~~~-~~~--~~~~~p~~~~~~~~~~g~~~~~~~~~~G~~~~----  393 (469)
                      +|||+..+.          .+..|..+|+.+|.+|++. ...  .+..+|+   ..|..+      .+..+|.+..    
T Consensus       311 ~GD~~~~~~----------~~~~A~~~g~~aa~~i~~~~~~~~~~~~~~p~---~~~~~p------~~a~vGlte~~a~~  371 (492)
T 3ic9_A          311 AGDANNTLT----------LLHEAADDGKVAGTNAGAYPVIAQGQRRAPLS---VVFTEP------QVASVGLSLRQIED  371 (492)
T ss_dssp             CGGGGTSSC----------SHHHHHHHHHHHHHHHHHTTSCCEECCCCCEE---EECSSS------EEEEEESCHHHHHH
T ss_pred             EEecCCCCc----------cHHHHHHHHHHHHHHHcCCCCCcccCCCCCcE---EEECCC------CeEEecCCHHHHHh
Confidence            999997643          4556999999999999973 222  2333443   233221      1444554321    


Q ss_pred             --------cEEE-Ecc-----------CCCcEEEEEEe--CCEEEEEEeecCChHHhHH-HHHHHhCCCCCCh--hhhcC
Q 012165          394 --------ETIE-IGN-----------FDPKIATFWID--SGKLKGVLVESGSPEEFQL-LPTLARSQPFVDK--AKLQQ  448 (469)
Q Consensus       394 --------~~~~-~~~-----------~~~~~~~~~~~--~~~l~g~~~~~~~~~~~~~-~~~~~~~~~~~~~--~~~~~  448 (469)
                              +... .-.           ....+.|+.++  +++|+|+++++.++.++.. +..+|+.+.+++.  ..++.
T Consensus       372 ~~g~~~g~~~~~~~~~~~~~~~a~~~~~~~g~~kli~~~~~~~ilG~~~~g~~a~e~i~~~~~ai~~~~t~~~l~~~~~~  451 (492)
T 3ic9_A          372 LYADQDAANYVVGQVSFEGQGRSRVMGKNKGLLNVYADRTSGEFLGAEMFGPAAEHIGHLLAWARQQQMTVQAMLTMPFY  451 (492)
T ss_dssp             HCSCSSSCCEEEEEEEGGGCHHHHHTTCCCCEEEEEEETTTCBEEEEEEEETTHHHHHHHHHHHHHTTCBHHHHTTSCCC
T ss_pred             ccCccCCccEEEEEEEeccchhhhhcCCCcEEEEEEEECCCCEEEEEEEECCCHHHHHHHHHHHHHCCCCHHHHhhCCCC
Confidence                    1111 000           12347777775  5999999998888866555 4456788877662  33478


Q ss_pred             CCcHHHHHHHHHhcCCc
Q 012165          449 ASSVEEALEIARAALPV  465 (469)
Q Consensus       449 ~~~~~~~~~~~~~~~~~  465 (469)
                      |||+.|++++|++++.+
T Consensus       452 hPt~~e~~~~a~~~~~~  468 (492)
T 3ic9_A          452 HPVIEEGLRTALRDAQQ  468 (492)
T ss_dssp             TTCTHHHHHHHHHHHHH
T ss_pred             CCChHHHHHHHHHHHHH
Confidence            99999999999887554

>3qfa_A Thioredoxin reductase 1, cytoplasmic; protein-protein complex, rossmann fold, HO pyridine nucleotide disulfide oxidoreductase, electron TRAN oxidoreductase; HET: FAD; 2.20A {Homo sapiens} PDB: 3qfb_A* 2j3n_A* 2zzc_A* 2zzb_A* 2zz0_A* 2cfy_A* 1h6v_A* 3ean_A* 3eao_A*

Probab=100.00  E-value=3.4e-38  Score=325.04  Aligned_cols=384  Identities=19%  Similarity=0.238  Sum_probs=254.2

Q ss_pred             CCCCcEEEEcCcHHHHHHHHHHHHcCCCCCcEEEEcCCCCCCCCCC-CC----------c-cccc--------------C
Q 012165           49 NENREFVIVGGGNAAGYAARTFVEHGMADGRLCIVSKEAYAPYERP-AL----------T-KGYL--------------F  102 (469)
Q Consensus        49 ~~~~~vvIIGgG~AGl~aA~~L~~~g~~~~~V~vie~~~~~~~~~~-~l----------~-~~~~--------------~  102 (469)
                      +..+||+|||||+||++||..|++.|.   +|+|||+.+..+.... .+          + +.++              +
T Consensus        30 ~~~~DVvVIGgGpaGl~aA~~la~~G~---~V~liEk~~~~~~~~~~~~GGtc~~~GciPsk~l~~~~~~~~~~~~~~~~  106 (519)
T 3qfa_A           30 SYDYDLIIIGGGSGGLAAAKEAAQYGK---KVMVLDFVTPTPLGTRWGLGGTCVNVGCIPKKLMHQAALLGQALQDSRNY  106 (519)
T ss_dssp             SCSEEEEEECCSHHHHHHHHHHHHTTC---CEEEECCCCCCTTCCCCCTTCHHHHHSHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred             CCCCCEEEECCCHHHHHHHHHHHhCCC---eEEEEeccCccccccCCCcccccCCcCccchHHHHHHHHHHHHHHHHHhc
Confidence            456899999999999999999999987   7999998652211100 00          0 0000              0


Q ss_pred             CCC---CCCCCCCCCccccC---CCCCCCCHhHHHHCCcEEEeCCcEEEEeCCCcEEEeCCCe--EEEeccEEeccCCCC
Q 012165          103 PLD---KKPARLPGFHTCVG---SGGERQTPEWYKEKGIEMIYQDPVTSIDIEKQTLITNSGK--LLKYGSLIVATGCTA  174 (469)
Q Consensus       103 ~~~---~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~i~~~~~~~v~~id~~~~~v~~~~g~--~~~yd~lVlAtG~~~  174 (469)
                      +..   ....++..+.....   ..........++..+++++.+ .+..+++....|.+.+|+  ++.||+||||||++|
T Consensus       107 g~~~~~~~~~d~~~~~~~~~~~~~~l~~~~~~~~~~~gV~~i~g-~a~~~d~~~v~v~~~~g~~~~i~~d~lViATGs~p  185 (519)
T 3qfa_A          107 GWKVEETVKHDWDRMIEAVQNHIGSLNWGYRVALREKKVVYENA-YGQFIGPHRIKATNNKGKEKIYSAERFLIATGERP  185 (519)
T ss_dssp             TBCCCSSCCBCHHHHHHHHHHHHHHHHHHHHHHHHHTTCEEECS-EEEEEETTEEEEECTTCCCCEEEEEEEEECCCEEE
T ss_pred             CcccCCcCccCHHHHHHHHHHHHHHHHHHHHHHHHhCCCEEEEE-EEEEeeCCEEEEEcCCCCEEEEECCEEEEECCCCc
Confidence            000   00000000000000   000000112345679999886 778888877777777764  799999999999998


Q ss_pred             CcCCCCCCCCcCcEEEecCHHHHHHHHHhhhcCCeEEEEcCChHHHHHHHHHHhCCCeEe-----------------eeH
Q 012165          175 SRFPEKIGGYLPGVHYIRDVADADALISSLEKAKKVVVVGGGYIGMEVAAAAVGWKLDTT-----------------RYE  237 (469)
Q Consensus       175 ~~~~~~~g~~~~~v~~~~~~~~~~~~~~~~~~~~~vvVvG~G~~g~e~A~~l~~~g~~v~-----------------~~~  237 (469)
                      + .|.++|...    ...+   .+.+......+++++|||+|++|+|+|..|+++|.+|+                 .+.
T Consensus       186 ~-~p~i~G~~~----~~~t---~~~~~~l~~~~~~vvVIGgG~ig~E~A~~l~~~G~~Vtlv~~~~~l~~~d~~~~~~~~  257 (519)
T 3qfa_A          186 R-YLGIPGDKE----YCIS---SDDLFSLPYCPGKTLVVGASYVALECAGFLAGIGLDVTVMVRSILLRGFDQDMANKIG  257 (519)
T ss_dssp             C-CCCCTTHHH----HCBC---HHHHTTCSSCCCSEEEECCSHHHHHHHHHHHHTTCCEEEEESSCSSTTSCHHHHHHHH
T ss_pred             C-CCCCCCccC----ceEc---HHHHhhhhhcCCeEEEECCcHHHHHHHHHHHHcCCeEEEEecccccccCCHHHHHHHH
Confidence            7 455555211    1112   33333333457889999999999999999999999987                 445


Q ss_pred             HHHHHcCcEEEcCCeEEEEEeCCC---CcE-EEEEcCCCC---EEeCCEEEEccCCccCCch--hhhcCCccc--CCCEE
Q 012165          238 QLYQQNGVKFVKGASIKNLEAGSD---GRV-AAVKLEDGS---TIDADTIVIGIGAKPTVSP--FERVGLNSS--VGGIQ  306 (469)
Q Consensus       238 ~~l~~~gV~~~~~~~v~~i~~~~~---~~v-~~v~~~~g~---~i~~D~vi~a~G~~p~~~~--~~~~gl~~~--~g~i~  306 (469)
                      +.+++.||++++++.+++++..++   +.+ ..+...+|.   ++++|.||+++|++||+++  ++.+|++.+  +|+|.
T Consensus       258 ~~l~~~GV~v~~~~~v~~v~~~~~~~~~~~~v~~~~~~g~~~~~~~~D~vi~a~G~~p~~~~l~l~~~gl~~~~~~G~I~  337 (519)
T 3qfa_A          258 EHMEEHGIKFIRQFVPIKVEQIEAGTPGRLRVVAQSTNSEEIIEGEYNTVMLAIGRDACTRKIGLETVGVKINEKTGKIP  337 (519)
T ss_dssp             HHHHHTTCEEEESEEEEEEEEEECCTTCEEEEEEEESSSSCEEEEEESEEEECSCEEESCSSSCSTTTTCCCCTTTCCBC
T ss_pred             HHHHHCCCEEEeCCeEEEEEEccCCCCceEEEEEEECCCcEEEEEECCEEEEecCCcccCCCCChhhcCcEEcCCCCeEe
Confidence            678899999999988888765322   322 223345552   5789999999999999986  688888875  57899


Q ss_pred             eCCCCCCCCCceEEeccccccCCccCCcccccchHHHHHHHHHHHHHHHhcCCCC--CCCCCCceeeecccccCCCccee
Q 012165          307 VDGQFRTRMPGIFAIGDVAAFPLKMYDRTARVEHVDHARQSAQHCIKALLSAQTH--TYDYLPYFYSRVFEYEGSPRKVW  384 (469)
Q Consensus       307 Vd~~~~t~~~~Vfa~GD~a~~~~~~~~~~~~~~~~~~A~~~a~~~a~~i~~~~~~--~~~~~p~~~~~~~~~~g~~~~~~  384 (469)
                      ||+++||++|+|||+|||+....         ..+..|..+|+.+|+||++....  .+..+|+   ..|..+.      
T Consensus       338 Vd~~~~Ts~~~IyA~GD~~~g~~---------~~~~~A~~~g~~aa~~i~g~~~~~~~~~~~p~---~~~~~p~------  399 (519)
T 3qfa_A          338 VTDEEQTNVPYIYAIGDILEDKV---------ELTPVAIQAGRLLAQRLYAGSTVKCDYENVPT---TVFTPLE------  399 (519)
T ss_dssp             CCTTSBCSSTTEEECGGGBSSSC---------CCHHHHHHHHHHHHHHHHSCCCCCCCCTTCCE---EECSSSC------
T ss_pred             eCCCCccCCCCEEEEEeccCCCC---------ccHHHHHHHHHHHHHHHcCCCCccCCCCcCcE---EEECCCc------
Confidence            99999999999999999994211         14556999999999999975432  3455564   3333221      


Q ss_pred             eEEeecCCC---------cEEE-Ec------------cCCCcEEEEEEe---CCEEEEEEeecCChHHhHH-HHHHHhCC
Q 012165          385 WQFFGDNVG---------ETIE-IG------------NFDPKIATFWID---SGKLKGVLVESGSPEEFQL-LPTLARSQ  438 (469)
Q Consensus       385 ~~~~G~~~~---------~~~~-~~------------~~~~~~~~~~~~---~~~l~g~~~~~~~~~~~~~-~~~~~~~~  438 (469)
                      +..+|.++.         .... ..            .....|.|+.++   +++|+|+++++.++.++.. +..+|+.+
T Consensus       400 ~a~vGlte~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~Kli~~~~~~~~ilGa~i~g~~a~e~i~~~~~ai~~~  479 (519)
T 3qfa_A          400 YGACGLSEEKAVEKFGEENIEVYHSYFWPLEWTIPSRDNNKCYAKIICNTKDNERVVGFHVLGPNAGEVTQGFAAALKCG  479 (519)
T ss_dssp             EEEEECCHHHHHHHHCGGGEEEEEEEECCHHHHTTTCCTTTEEEEEEEETTTTCEEEEEEEESTTHHHHHHHHHHHHHTT
T ss_pred             eEEecCCHHHHHhhCCCCCEEEEEEeccchhhhhhccCCCcEEEEEEEecCCCCEEEEEEEECCCHHHHHHHHHHHHHCC
Confidence            455665431         1111 00            012347787775   4899999997777765544 45567888


Q ss_pred             CCCCh--hhhcCCCcHHHHHHHHHhc
Q 012165          439 PFVDK--AKLQQASSVEEALEIARAA  462 (469)
Q Consensus       439 ~~~~~--~~~~~~~~~~~~~~~~~~~  462 (469)
                      .+++.  ..++.|||++|+++++...
T Consensus       480 ~t~~~l~~~~~~hPt~~E~~~~~~~~  505 (519)
T 3qfa_A          480 LTKKQLDSTIGIHPVCAEVFTTLSVT  505 (519)
T ss_dssp             CBHHHHHHSCCCTTCGGGGGGGCCCB
T ss_pred             CCHHHHhccccCCCChHHHHHHHHhh
Confidence            87763  3357899999999876644

>3o0h_A Glutathione reductase; ssgcid, structur genomics, seattle structural genomics center for infectious gluathione reductase, oxidoreductase; HET: FAD; 1.90A {Bartonella henselae}

Probab=100.00  E-value=6.8e-39  Score=328.05  Aligned_cols=377  Identities=20%  Similarity=0.252  Sum_probs=255.9

Q ss_pred             CCCcEEEEcCcHHHHHHHHHHHHcCCCCCcEEEEcCCCCCCCC---CCCC-cc----------------cccCCCCCCCC
Q 012165           50 ENREFVIVGGGNAAGYAARTFVEHGMADGRLCIVSKEAYAPYE---RPAL-TK----------------GYLFPLDKKPA  109 (469)
Q Consensus        50 ~~~~vvIIGgG~AGl~aA~~L~~~g~~~~~V~vie~~~~~~~~---~~~l-~~----------------~~~~~~~~~~~  109 (469)
                      .++||+|||||+||+++|..|++.|+   +|+|||++. .+..   .... ++                .+.........
T Consensus        25 ~~~DVvVIGgG~aGl~aA~~la~~G~---~V~liEk~~-~GG~~~~~gcip~k~l~~~a~~~~~~~~~~~~g~~~~~~~~  100 (484)
T 3o0h_A           25 FDFDLFVIGSGSGGVRAARLAGALGK---RVAIAEEYR-IGGTCVIRGCVPKKLYFYASQYAQEFSKSIGFGWKYADPIF  100 (484)
T ss_dssp             CSEEEEEECCSHHHHHHHHHHHHTTC---CEEEEESSC-TTHHHHHHSHHHHHHHHHHHHHHHHHHHHGGGTBCCCCCEE
T ss_pred             CCCCEEEECcCHHHHHHHHHHHhCcC---EEEEEeCCC-CCCceeccCccccHHHHHHHHHHHHHHHHHhCCcccCCCcc
Confidence            46899999999999999999999987   799999943 2110   0000 00                00000000000


Q ss_pred             CCCCCccc---cCCCCCCCCHhHHHHCCcEEEeCCcEEEEeCCCcEEEeC-CCeEEEeccEEeccCCCCCcCCCCCCCCc
Q 012165          110 RLPGFHTC---VGSGGERQTPEWYKEKGIEMIYQDPVTSIDIEKQTLITN-SGKLLKYGSLIVATGCTASRFPEKIGGYL  185 (469)
Q Consensus       110 ~~~~~~~~---~~~~~~~~~~~~~~~~~i~~~~~~~v~~id~~~~~v~~~-~g~~~~yd~lVlAtG~~~~~~~~~~g~~~  185 (469)
                      +++.+...   ...........++++.+++++.+ .+..++.  +.+.+. ++..+.||+||||||+.|...|.++|.+ 
T Consensus       101 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~g-~~~~i~~--~~v~v~~~~~~~~~d~lviAtG~~p~~~p~i~G~~-  176 (484)
T 3o0h_A          101 NWEKLVAAKNKEISRLEGLYREGLQNSNVHIYES-RAVFVDE--HTLELSVTGERISAEKILIATGAKIVSNSAIKGSD-  176 (484)
T ss_dssp             CHHHHHHHHHHHHHHHHHHHHHHHHHTTCEEEES-CEEEEET--TEEEETTTCCEEEEEEEEECCCEEECCC--CBTGG-
T ss_pred             CHHHHHHHHHHHHHHHHHHHHHHHHhCCCEEEEe-EEEEeeC--CEEEEecCCeEEEeCEEEEccCCCcccCCCCCCcc-
Confidence            00000000   00000001223456679999986 7777764  567776 7788999999999999886345555532 


Q ss_pred             CcEEEecCHHHHHHHHHhhhcCCeEEEEcCChHHHHHHHHHHhCCCeEe------------------eeHHHHHHcCcEE
Q 012165          186 PGVHYIRDVADADALISSLEKAKKVVVVGGGYIGMEVAAAAVGWKLDTT------------------RYEQLYQQNGVKF  247 (469)
Q Consensus       186 ~~v~~~~~~~~~~~~~~~~~~~~~vvVvG~G~~g~e~A~~l~~~g~~v~------------------~~~~~l~~~gV~~  247 (469)
                       .+.+      .+.+......+++++|||+|++|+|+|..+.++|.+++                  .+.+.+++.||++
T Consensus       177 -~~~~------~~~~~~~~~~~~~v~ViGgG~~g~e~A~~l~~~g~~Vtli~~~~~~l~~~~~~~~~~l~~~l~~~Gv~i  249 (484)
T 3o0h_A          177 -LCLT------SNEIFDLEKLPKSIVIVGGGYIGVEFANIFHGLGVKTTLLHRGDLILRNFDYDLRQLLNDAMVAKGISI  249 (484)
T ss_dssp             -GSBC------TTTGGGCSSCCSEEEEECCSHHHHHHHHHHHHTTCEEEEECSSSSSSTTSCHHHHHHHHHHHHHHTCEE
T ss_pred             -cccc------HHHHHhHHhcCCcEEEECcCHHHHHHHHHHHHcCCeEEEEECCCccccccCHHHHHHHHHHHHHCCCEE
Confidence             1222      12222223458999999999999999999999999887                  3456788899999


Q ss_pred             EcCCeEEEEEeCCCCcEEEEEcCCCCEEeCCEEEEccCCccCCch--hhhcCCccc-CCCEEeCCCCCCCCCceEEeccc
Q 012165          248 VKGASIKNLEAGSDGRVAAVKLEDGSTIDADTIVIGIGAKPTVSP--FERVGLNSS-VGGIQVDGQFRTRMPGIFAIGDV  324 (469)
Q Consensus       248 ~~~~~v~~i~~~~~~~v~~v~~~~g~~i~~D~vi~a~G~~p~~~~--~~~~gl~~~-~g~i~Vd~~~~t~~~~Vfa~GD~  324 (469)
                      ++++.|++++.++ +.+ .+.+++|+++++|.||+|+|++|++.+  ++..|++.+ +|+|.||+++||++|+|||+|||
T Consensus       250 ~~~~~V~~i~~~~-~~v-~v~~~~g~~i~aD~Vi~A~G~~p~~~~l~l~~~g~~~~~~G~i~vd~~~~t~~~~Iya~GD~  327 (484)
T 3o0h_A          250 IYEATVSQVQSTE-NCY-NVVLTNGQTICADRVMLATGRVPNTTGLGLERAGVKVNEFGAVVVDEKMTTNVSHIWAVGDV  327 (484)
T ss_dssp             ESSCCEEEEEECS-SSE-EEEETTSCEEEESEEEECCCEEECCTTCCHHHHTCCBCTTSCBCCCTTSBCSSTTEEECGGG
T ss_pred             EeCCEEEEEEeeC-CEE-EEEECCCcEEEcCEEEEeeCCCcCCCCCChhhcCceECCCCCEeECCCCCCCCCCEEEEEec
Confidence            9999999998643 344 688899999999999999999999987  678888876 57799999999999999999999


Q ss_pred             cccCCccCCcccccchHHHHHHHHHHHHHHHhcCCCC--CCCCCCceeeecccccCCCcceeeEEeecCCCc-------E
Q 012165          325 AAFPLKMYDRTARVEHVDHARQSAQHCIKALLSAQTH--TYDYLPYFYSRVFEYEGSPRKVWWQFFGDNVGE-------T  395 (469)
Q Consensus       325 a~~~~~~~~~~~~~~~~~~A~~~a~~~a~~i~~~~~~--~~~~~p~~~~~~~~~~g~~~~~~~~~~G~~~~~-------~  395 (469)
                      +..+.          .+..|..+|+.+|++|++....  .+..+|+   ..|..+.      +..+|.++.+       .
T Consensus       328 ~~~~~----------~~~~A~~~g~~aa~~i~~~~~~~~~~~~~p~---~~~~~p~------~a~vGlte~~a~~~g~~~  388 (484)
T 3o0h_A          328 TGHIQ----------LTPVAIHDAMCFVKNAFENTSTTPDYDLITT---AVFSQPE------IGTVGLSEEDALHRYKRV  388 (484)
T ss_dssp             GTSCC----------CHHHHHHHHHHHHHHHHC---CCCCCTTCCE---EECCSSC------EEEEECCHHHHHHHCSEE
T ss_pred             CCCCc----------CHHHHHHHHHHHHHHHcCCCCCcCCCCCCcE---EEECCCC------EEEeeCCHHHHHHcCCCE
Confidence            97432          4456999999999999975433  4555664   3344322      5556654321       1


Q ss_pred             EE-Ec-----------cCCCcEEEEEEe--CCEEEEEEeecCChHHhHH-HHHHHhCCCCCCh--hhhcCCCcHHHHHHH
Q 012165          396 IE-IG-----------NFDPKIATFWID--SGKLKGVLVESGSPEEFQL-LPTLARSQPFVDK--AKLQQASSVEEALEI  458 (469)
Q Consensus       396 ~~-~~-----------~~~~~~~~~~~~--~~~l~g~~~~~~~~~~~~~-~~~~~~~~~~~~~--~~~~~~~~~~~~~~~  458 (469)
                      .. ..           +....+.|+.++  +++|+|+++++.++.++.. +..+|+.+.+++.  ..++.|||+.|++++
T Consensus       389 ~~~~~~~~~~~~~~~~~~~~~~~k~~~~~~~~~ilG~~~~g~~a~~~i~~~~~ai~~~~t~~~l~~~~~~hPt~~e~~~~  468 (484)
T 3o0h_A          389 EIYRTVFRPMRNVLSGSPEKMFMKLVVDGESRIVVGAHVLGENAGEIAQLIGISLKGKLTKDIFDKTMAVHPTMSEELVT  468 (484)
T ss_dssp             EEEEEEECCHHHHHHTCCCCEEEEEEEETTTCBEEEEEEESTTHHHHHHHHHHHHHTTCBHHHHHHSCCCSSCSGGGGGC
T ss_pred             EEEEecCCcchhhccCCCCcEEEEEEEECCCCEEEEEEEECcCHHHHHHHHHHHHHCCCCHHHHhccccCCCChHHHHHH
Confidence            11 10           012346777775  5999999998877766554 4456788877762  335789999999998


Q ss_pred             HHhc
Q 012165          459 ARAA  462 (469)
Q Consensus       459 ~~~~  462 (469)
                      ++..
T Consensus       469 ~~~~  472 (484)
T 3o0h_A          469 MYKP  472 (484)
T ss_dssp             CCSC
T ss_pred             Hhhh
Confidence            7743

>1gte_A Dihydropyrimidine dehydrogenase; electron transfer, flavin, iron-sulfur clusters, pyrimidine catabolism, 5-fluorouracil degradation, oxidoreductase; HET: FMN FAD; 1.65A {Sus scrofa} SCOP: a.1.2.2 c.1.4.1 c.3.1.1 c.4.1.1 d.58.1.5 PDB: 1gt8_A* 1gth_A* 1h7w_A* 1h7x_A*

Probab=100.00  E-value=2.3e-38  Score=349.31  Aligned_cols=335  Identities=18%  Similarity=0.163  Sum_probs=236.6

Q ss_pred             cccccccccccccccc--CCCCcccccc---cCCccccccccccccc---------cc--------CCCCCCcEEEEcCc
Q 012165            3 SVSNSLSFKHGLSLWC--PQSPSLHRIR---HSSAKNFQRRGFVVAY---------SS--------FANENREFVIVGGG   60 (469)
Q Consensus         3 ~~~~~~~~~~~~~~~~--~~~~~~~~~~---~~~~~~~~~~~~~~~~---------~~--------~~~~~~~vvIIGgG   60 (469)
                      .++||||.+|||+||+  +|+..|.+..   .++++..++++..+..         .+        .....+||+|||||
T Consensus       117 ~~~n~~p~~~grvCp~~~~Ce~~C~~~~~~~~pv~I~~le~~~~d~~~~~~~~~~~~p~~~~~~~~~~~~~~~VvVIGgG  196 (1025)
T 1gte_A          117 FSDNPLGLTCGMVCPTSDLCVGGCNLYATEEGSINIGGLQQFASEVFKAMNIPQIRNPCLPSQEKMPEAYSAKIALLGAG  196 (1025)
T ss_dssp             HHHCTTHHHHHHHCCGGGSGGGGCGGGGSTTCCCCHHHHHHHHHHHHHHHTCCCCCCTTSCCGGGSCGGGGCCEEEECCS
T ss_pred             HhcCChhHhhcCCCCChhhHHhhCccCCCCCCCccHhHHHHHHHHHHHHhCCccccCccccccccCCccCCCEEEEECcc
Confidence            4689999999999998  9999999964   6888888887655421         11        01235799999999


Q ss_pred             HHHHHHHHHHHHcCCCCCcEEEEcCCCCCCCCCCCCcccccCCCCCCCCCCCCCccccCCCCCCCCHhHHHHCCcEEEeC
Q 012165           61 NAAGYAARTFVEHGMADGRLCIVSKEAYAPYERPALTKGYLFPLDKKPARLPGFHTCVGSGGERQTPEWYKEKGIEMIYQ  140 (469)
Q Consensus        61 ~AGl~aA~~L~~~g~~~~~V~vie~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~  140 (469)
                      +||++||.+|++.|+ . +|+|+|+++.++..   +.  +..+.    ..++.  .     ......+++++.|++++.+
T Consensus       197 pAGl~aA~~L~~~G~-~-~Vtv~E~~~~~GG~---~~--~~ip~----~~~~~--~-----~~~~~~~~~~~~gv~~~~~  258 (1025)
T 1gte_A          197 PASISCASFLARLGY-S-DITIFEKQEYVGGL---ST--SEIPQ----FRLPY--D-----VVNFEIELMKDLGVKIICG  258 (1025)
T ss_dssp             HHHHHHHHHHHHTTC-C-CEEEEESSSSCSTH---HH--HTSCT----TTSCH--H-----HHHHHHHHHHTTTCEEEES
T ss_pred             HHHHHHHHHHHhcCC-C-cEEEEeCCCCCCcc---cc--ccCCc----ccCCH--H-----HHHHHHHHHHHCCcEEEcc
Confidence            999999999999997 2 69999998654321   00  00110    01100  0     0112246778899999998


Q ss_pred             CcEEEEeCCCcEEEeCCCeEEEeccEEeccCC-CCCcCCCCCCCC-cCcEEEecCHHHHHHHHHh----------hhcCC
Q 012165          141 DPVTSIDIEKQTLITNSGKLLKYGSLIVATGC-TASRFPEKIGGY-LPGVHYIRDVADADALISS----------LEKAK  208 (469)
Q Consensus       141 ~~v~~id~~~~~v~~~~g~~~~yd~lVlAtG~-~~~~~~~~~g~~-~~~v~~~~~~~~~~~~~~~----------~~~~~  208 (469)
                      +.+.     .+.++++++.++.||+||||||+ .|+.+|.++|.. .+++++..++.........          ...++
T Consensus       259 ~~v~-----~~~v~~~~~~~~~~d~vvlAtGa~~p~~l~~~~G~~~~~gv~~a~~~L~~~~~~~~~~~~~~~~~~~~~~~  333 (1025)
T 1gte_A          259 KSLS-----ENEITLNTLKEEGYKAAFIGIGLPEPKTDDIFQGLTQDQGFYTSKDFLPLVAKSSKAGMCACHSPLPSIRG  333 (1025)
T ss_dssp             CCBS-----TTSBCHHHHHHTTCCEEEECCCCCEECCCGGGTTCCTTTTEEEHHHHHHHHHHHHCBTTBSCCCCCCCCCS
T ss_pred             cEec-----cceEEhhhcCccCCCEEEEecCCCCCCCCCCCCCCCCCCCEEEhHHHHHHHHhhcccccccccccccccCC
Confidence            6652     13455555555789999999999 476554434432 4677664332221110000          12357


Q ss_pred             eEEEEcCChHHHHHHHHHHhCCC-eEee--------------eHHHHHHcCcEEEcCCeEEEEEeCCCCcEEEEEcC---
Q 012165          209 KVVVVGGGYIGMEVAAAAVGWKL-DTTR--------------YEQLYQQNGVKFVKGASIKNLEAGSDGRVAAVKLE---  270 (469)
Q Consensus       209 ~vvVvG~G~~g~e~A~~l~~~g~-~v~~--------------~~~~l~~~gV~~~~~~~v~~i~~~~~~~v~~v~~~---  270 (469)
                      +|+|||||.+|+|+|..+.++|. +|+.              ..+.+++.||+++++..+.++..+ ++++.++++.   
T Consensus       334 ~VvVIGgG~~g~e~A~~~~~~G~~~Vtvv~r~~~~~~~~~~~e~~~~~~~Gv~~~~~~~~~~i~~~-~g~v~~v~~~~~~  412 (1025)
T 1gte_A          334 AVIVLGAGDTAFDCATSALRCGARRVFLVFRKGFVNIRAVPEEVELAKEEKCEFLPFLSPRKVIVK-GGRIVAVQFVRTE  412 (1025)
T ss_dssp             EEEEECSSHHHHHHHHHHHHTTCSEEEEECSSCGGGCCSCHHHHHHHHHTTCEEECSEEEEEEEEE-TTEEEEEEEEEEE
T ss_pred             cEEEECCChHHHHHHHHHHHcCCCEEEEEEecChhhCCCCHHHHHHHHHcCCEEEeCCCceEEEcc-CCeEEEEEEEEeE
Confidence            99999999999999999999996 7771              124577899999999999999753 5666556543   


Q ss_pred             ---CC---------CEEeCCEEEEccCCccC-Cchhhh-cCCccc-CCCEEeCC-CCCCCCCceEEeccccccCCccCCc
Q 012165          271 ---DG---------STIDADTIVIGIGAKPT-VSPFER-VGLNSS-VGGIQVDG-QFRTRMPGIFAIGDVAAFPLKMYDR  334 (469)
Q Consensus       271 ---~g---------~~i~~D~vi~a~G~~p~-~~~~~~-~gl~~~-~g~i~Vd~-~~~t~~~~Vfa~GD~a~~~~~~~~~  334 (469)
                         +|         +++++|.||+|+|++|+ ..++.+ .|++.+ +|+|.||+ ++||+.|+|||+|||+..+.     
T Consensus       413 ~~~~g~~~~~~g~~~~i~aD~Vi~A~G~~~~~~~l~~~~~gl~~~~~G~I~vd~~~~~Ts~~~VfA~GD~~~~~~-----  487 (1025)
T 1gte_A          413 QDETGKWNEDEDQIVHLKADVVISAFGSVLRDPKVKEALSPIKFNRWDLPEVDPETMQTSEPWVFAGGDIVGMAN-----  487 (1025)
T ss_dssp             ECTTSCEEEEEEEEEEEECSEEEECSCEECCCHHHHHHTTTSCBCTTSSBCCCTTTCBCSSTTEEECSGGGCSCC-----
T ss_pred             EcCCCCcccCCCceEEEECCEEEECCCCCCCchhhhhcccCceECCCCCEEECCCCCccCCCCEEEeCCCCCCch-----
Confidence               23         36899999999999874 556666 478876 67899997 89999999999999998543     


Q ss_pred             ccccchHHHHHHHHHHHHHHHhc-------CCCCCCCCCCceee
Q 012165          335 TARVEHVDHARQSAQHCIKALLS-------AQTHTYDYLPYFYS  371 (469)
Q Consensus       335 ~~~~~~~~~A~~~a~~~a~~i~~-------~~~~~~~~~p~~~~  371 (469)
                           .+..|+.+|+.+|.+|.+       .....++.+||||+
T Consensus       488 -----~~~~A~~~G~~aA~~i~~~L~~~~~~~~~~~~~~p~~~~  526 (1025)
T 1gte_A          488 -----TTVESVNDGKQASWYIHKYIQAQYGASVSAKPELPLFYT  526 (1025)
T ss_dssp             -----CHHHHHHHHHHHHHHHHHHHHHHTTCCCCSSCCBCCCCC
T ss_pred             -----HHHHHHHHHHHHHHHHHHHHHhccCCCcccCcCcccccc
Confidence                 334588888988888863       12235678999998

>2x8g_A Thioredoxin glutathione reductase; redox-active center, detoxification pathway, oxidoreductase, flavoprotein; HET: FAD PG4; 1.90A {Schistosoma mansoni} PDB: 2x8c_A* 2x8h_A* 2x99_A* 3h4k_A* 2v6o_A*

Probab=100.00  E-value=2.6e-37  Score=324.51  Aligned_cols=383  Identities=16%  Similarity=0.211  Sum_probs=248.2

Q ss_pred             CCCCcEEEEcCcHHHHHHHHHHHHcCCCCCcEEEEcCCCCCCCCCC-CCc----------cccc---------------C
Q 012165           49 NENREFVIVGGGNAAGYAARTFVEHGMADGRLCIVSKEAYAPYERP-ALT----------KGYL---------------F  102 (469)
Q Consensus        49 ~~~~~vvIIGgG~AGl~aA~~L~~~g~~~~~V~vie~~~~~~~~~~-~l~----------~~~~---------------~  102 (469)
                      ..++||+|||||+||++||.+|++.|+   +|+|+|+....+.... .+.          ...+               +
T Consensus       105 ~~~~dvvVIG~GpAGl~aA~~l~~~g~---~v~liE~~~~~~~g~~~~~GG~~~~~g~iP~~~l~~~~~~~~~~~~~~~~  181 (598)
T 2x8g_A          105 KYDYDLIVIGGGSGGLAAGKEAAKYGA---KTAVLDYVEPTPIGTTWGLGGTCVNVGCIPKKLMHQAGLLSHALEDAEHF  181 (598)
T ss_dssp             SSSEEEEEECCSHHHHHHHHHHHHTTC---CEEEECCCCCCTTCCCCCTTHHHHHHSHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred             cccccEEEECCCccHHHHHHHHHhCCC---eEEEEeccCCcccccccccCceEeccCCCchHHHHHHHHHHHHHhhHHhC
Confidence            456899999999999999999999987   7999997322111000 000          0000               0


Q ss_pred             CCC--C--CCCCCCCCccccCC---CCCCCCHhHHHHCCcEEEeCCcEEEEeCCCcEEEeCCC--eEEEeccEEeccCCC
Q 012165          103 PLD--K--KPARLPGFHTCVGS---GGERQTPEWYKEKGIEMIYQDPVTSIDIEKQTLITNSG--KLLKYGSLIVATGCT  173 (469)
Q Consensus       103 ~~~--~--~~~~~~~~~~~~~~---~~~~~~~~~~~~~~i~~~~~~~v~~id~~~~~v~~~~g--~~~~yd~lVlAtG~~  173 (469)
                      +..  .  ...++..+......   .........+...+++++.+ .+..++.....+.+.+|  .++.||+||||||++
T Consensus       182 g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~~~~-~~~~~~~~~v~v~~~~g~~~~~~~d~lviAtGs~  260 (598)
T 2x8g_A          182 GWSLDRSKISHNWSTMVEGVQSHIGSLNWGYKVALRDNQVTYLNA-KGRLISPHEVQITDKNQKVSTITGNKIILATGER  260 (598)
T ss_dssp             TCCCCGGGCCCCHHHHHHHHHHHHHHHHHHHHHHHHHTTCEEECS-EEEEEETTEEEEECTTCCEEEEEEEEEEECCCEE
T ss_pred             CccccCCcCccCHHHHHHHHHHHHHHHHHHHHHHHhhCCcEEEEE-EEEEcCCCEEEEEeCCCCeEEEEeCEEEEeCCCC
Confidence            000  0  00000000000000   00000011245678998875 66777766555666666  469999999999999


Q ss_pred             CCcCCCCCCCCcCcEEEecCHHHHHHHHHhhhcCCeEEEEcCChHHHHHHHHHHhCCCeEe-----------------ee
Q 012165          174 ASRFPEKIGGYLPGVHYIRDVADADALISSLEKAKKVVVVGGGYIGMEVAAAAVGWKLDTT-----------------RY  236 (469)
Q Consensus       174 ~~~~~~~~g~~~~~v~~~~~~~~~~~~~~~~~~~~~vvVvG~G~~g~e~A~~l~~~g~~v~-----------------~~  236 (469)
                      |+ .|.++|.... ..+      .+.+......+++++|||+|++|+|+|..|+++|.+|+                 .+
T Consensus       261 p~-~p~i~G~~~~-~~~------~~~~~~~~~~~~~vvViGgG~~g~E~A~~l~~~g~~Vtlv~~~~~l~~~d~~~~~~~  332 (598)
T 2x8g_A          261 PK-YPEIPGAVEY-GIT------SDDLFSLPYFPGKTLVIGASYVALECAGFLASLGGDVTVMVRSILLRGFDQQMAEKV  332 (598)
T ss_dssp             EC-CCSSTTHHHH-CEE------HHHHTTCSSCCCSEEEECCSHHHHHHHHHHHHTTCCEEEEESSCSSTTSCHHHHHHH
T ss_pred             CC-CCCCCCcccc-eEc------HHHHhhCccCCCEEEEECCCHHHHHHHHHHHHcCCEEEEEECCcCcCcCCHHHHHHH
Confidence            87 4555553211 111      23333323457899999999999999999999999987                 33


Q ss_pred             HHHHHHcCcEEEcCCeEEEEEeC-----CC---CcE-EEEEcCCCCEEe--CCEEEEccCCccCCch--hhhcCCccc-C
Q 012165          237 EQLYQQNGVKFVKGASIKNLEAG-----SD---GRV-AAVKLEDGSTID--ADTIVIGIGAKPTVSP--FERVGLNSS-V  302 (469)
Q Consensus       237 ~~~l~~~gV~~~~~~~v~~i~~~-----~~---~~v-~~v~~~~g~~i~--~D~vi~a~G~~p~~~~--~~~~gl~~~-~  302 (469)
                      .+.+++.||++++++.+++++..     ++   +.+ ..+.+.+|++++  +|.||+|+|++||+++  ++.+|++.+ +
T Consensus       333 ~~~l~~~gv~i~~~~~v~~v~~~~~~~~~~~~~~~~~v~~~~~~g~~~~~~~D~vi~a~G~~p~~~~l~~~~~gl~~~~~  412 (598)
T 2x8g_A          333 GDYMENHGVKFAKLCVPDEIKQLKVVDTENNKPGLLLVKGHYTDGKKFEEEFETVIFAVGREPQLSKVLCETVGVKLDKN  412 (598)
T ss_dssp             HHHHHHTTCEEEETEEEEEEEEEECCBTTTTBCCEEEEEEEETTSCEEEEEESEEEECSCEEECGGGTBCGGGCCCBCTT
T ss_pred             HHHHHhCCCEEEECCeEEEEEeccccccccCCCceEEEEEEeCCCcEEeccCCEEEEEeCCccccCccCchhcCceECCC
Confidence            56678899999999988888532     12   333 223456787665  9999999999999987  577888875 5


Q ss_pred             CCEEeCCCCCCCCCceEEeccccccCCccCCcccccchHHHHHHHHHHHHHHHhcCCC--CCCCCCCceeeecccccCCC
Q 012165          303 GGIQVDGQFRTRMPGIFAIGDVAAFPLKMYDRTARVEHVDHARQSAQHCIKALLSAQT--HTYDYLPYFYSRVFEYEGSP  380 (469)
Q Consensus       303 g~i~Vd~~~~t~~~~Vfa~GD~a~~~~~~~~~~~~~~~~~~A~~~a~~~a~~i~~~~~--~~~~~~p~~~~~~~~~~g~~  380 (469)
                      |+|.||+++||+.|+|||+|||+....         ..+..|..+|+.+|.+|++...  ..|..+|+.+   |..+.  
T Consensus       413 G~i~vd~~~~ts~~~VyA~GD~~~~~~---------~~~~~A~~~g~~aa~~i~~~~~~~~~~~~~p~~~---~~~~~--  478 (598)
T 2x8g_A          413 GRVVCTDDEQTTVSNVYAIGDINAGKP---------QLTPVAIQAGRYLARRLFAGATELTDYSNVATTV---FTPLE--  478 (598)
T ss_dssp             SCBCCCTTSBCSSTTEEECGGGBTTSC---------CCHHHHHHHHHHHHHHHHHCCCCCCCCTTCCEEE---CSSSC--
T ss_pred             CcEEeCCCCcCCCCCEEEEeeecCCCC---------ccHHHHHHhHHHHHHHHhcCCCcccCCCCCcEEE---ECCCc--
Confidence            779999999999999999999965321         1455699999999999997543  3455666532   32211  


Q ss_pred             cceeeEEeecCCC---------cEEEE------------c-cCCCcEEEEEEe---CCEEEEEEeecCChHHhHH-HHHH
Q 012165          381 RKVWWQFFGDNVG---------ETIEI------------G-NFDPKIATFWID---SGKLKGVLVESGSPEEFQL-LPTL  434 (469)
Q Consensus       381 ~~~~~~~~G~~~~---------~~~~~------------~-~~~~~~~~~~~~---~~~l~g~~~~~~~~~~~~~-~~~~  434 (469)
                          +..+|....         .....            + .....|.|++++   +++|+|+++++.++.++.. +..+
T Consensus       479 ----~a~vGl~e~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~kli~~~~~~~~ilG~~~~g~~a~~~i~~~~~a  554 (598)
T 2x8g_A          479 ----YGACGLSEEDAIEKYGDKDIEVYHSNFKPLEWTVAHREDNVCYMKLVCRKSDNMRVLGLHVLGPNAGEITQGYAVA  554 (598)
T ss_dssp             ----EEEEECCHHHHHHHHCGGGEEEEEEEECCTHHHHTTCCSSCEEEEEEEETTTTTEEEEEEEESTTHHHHHHHHHHH
T ss_pred             ----eEEEeCCHHHHHhhCCCCcEEEEEEeccchhHHhhcCCCCcEEEEEEEecCCCCEEEEEEEECCCHHHHHHHHHHH
Confidence                344554321         01110            0 012347777775   6999999987776765444 4556


Q ss_pred             HhCCCCCCh--hhhcCCCcHHHHHHHHHh
Q 012165          435 ARSQPFVDK--AKLQQASSVEEALEIARA  461 (469)
Q Consensus       435 ~~~~~~~~~--~~~~~~~~~~~~~~~~~~  461 (469)
                      |+.+.+++.  ..++.||++.|+++.++.
T Consensus       555 i~~~~t~~~l~~~~~~hPt~~e~~~~~~~  583 (598)
T 2x8g_A          555 IKMGATKADFDRTIGIHPTCSETFTTLHV  583 (598)
T ss_dssp             HHTTCBHHHHHHSCCCSSCSGGGGGSCCC
T ss_pred             HHcCCCHHHHhhccccCCCHHHHHHHHHH
Confidence            788877762  335789999999988775

>4g6h_A Rotenone-insensitive NADH-ubiquinone oxidoreducta mitochondrial; rossmann fold, electron transfer, FAD, oxidoreductase; HET: FAD NAD; 2.26A {Saccharomyces cerevisiae} PDB: 4g6g_A* 4g73_A* 4g74_A* 4g9k_A* 4gap_A* 4gav_A*

Probab=100.00  E-value=6.4e-38  Score=320.67  Aligned_cols=282  Identities=21%  Similarity=0.277  Sum_probs=208.9

Q ss_pred             cCCCCCCcEEEEcCcHHHHHHHHHHHHcCCCCCcEEEEcCCCCCCCCCCCCcccccCCCCCCCCCCCCCccccCCCCCCC
Q 012165           46 SFANENREFVIVGGGNAAGYAARTFVEHGMADGRLCIVSKEAYAPYERPALTKGYLFPLDKKPARLPGFHTCVGSGGERQ  125 (469)
Q Consensus        46 ~~~~~~~~vvIIGgG~AGl~aA~~L~~~g~~~~~V~vie~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  125 (469)
                      |....+++|||||||+||+++|..|++.++   +|||||+++++.|. |.|+. ...+ ......+           ...
T Consensus        37 p~~~~KprVVIIGgG~AGl~~A~~L~~~~~---~VtLId~~~~~~~~-PlL~~-va~G-~l~~~~i-----------~~p   99 (502)
T 4g6h_A           37 PQHSDKPNVLILGSGWGAISFLKHIDTKKY---NVSIISPRSYFLFT-PLLPS-APVG-TVDEKSI-----------IEP   99 (502)
T ss_dssp             CCSCSSCEEEEECSSHHHHHHHHHSCTTTC---EEEEEESSSEEECG-GGGGG-TTTT-SSCGGGG-----------EEE
T ss_pred             CCCCCCCCEEEECCcHHHHHHHHHhhhCCC---cEEEECCCCCcccc-cchhH-Hhhc-cccHHHh-----------hhh
Confidence            344566799999999999999999988765   89999999988664 65543 1111 1000000           001


Q ss_pred             CHhHH--HHCCcEEEeCCcEEEEeCCCcEEEeC--------------------CCeEEEeccEEeccCCCCCcCCCCCCC
Q 012165          126 TPEWY--KEKGIEMIYQDPVTSIDIEKQTLITN--------------------SGKLLKYGSLIVATGCTASRFPEKIGG  183 (469)
Q Consensus       126 ~~~~~--~~~~i~~~~~~~v~~id~~~~~v~~~--------------------~g~~~~yd~lVlAtG~~~~~~~~~~g~  183 (469)
                      .....  ++.+++++.+ +|++||+++++|++.                    ++.++.||+||||||+.+.. +.+||.
T Consensus       100 ~~~~~~~~~~~v~~~~~-~v~~ID~~~k~V~l~~~~~~~~~~~~~~~~~~~~~~~~~i~YD~LViAtGs~~~~-~~ipG~  177 (502)
T 4g6h_A          100 IVNFALKKKGNVTYYEA-EATSINPDRNTVTIKSLSAVSQLYQPENHLGLHQAEPAEIKYDYLISAVGAEPNT-FGIPGV  177 (502)
T ss_dssp             HHHHHTTCSSCEEEEEE-EEEEEEGGGTEEEEEEEEEEEECSSSCCCCCCCTTCCEEEECSEEEECCCCEECC-TTCTTH
T ss_pred             HHHHHHhhcCCeEEEEE-EEEEEEhhhCEEEEeecccceeecccccccccccCCceEEeCCEEEEcCCccccc-CCccCc
Confidence            11222  3457888885 899999999988763                    35679999999999999874 455553


Q ss_pred             CcCcEEEecCHHHHHHHHHhhh-----------------cCCeEEEEcCChHHHHHHHHHHhCC--------------Ce
Q 012165          184 YLPGVHYIRDVADADALISSLE-----------------KAKKVVVVGGGYIGMEVAAAAVGWK--------------LD  232 (469)
Q Consensus       184 ~~~~v~~~~~~~~~~~~~~~~~-----------------~~~~vvVvG~G~~g~e~A~~l~~~g--------------~~  232 (469)
                      . +..+.++++.++..+++.+.                 ...+++|||+|++|+|+|..|++++              .+
T Consensus       178 ~-e~a~~l~t~~dA~~ir~~l~~~~e~a~~~~~~~~~~~~~~~vvVvGgG~tGvE~A~~l~~~~~~~l~~~~~~~~~~~~  256 (502)
T 4g6h_A          178 T-DYGHFLKEIPNSLEIRRTFAANLEKANLLPKGDPERRRLLSIVVVGGGPTGVEAAGELQDYVHQDLRKFLPALAEEVQ  256 (502)
T ss_dssp             H-HHCEECSSHHHHHHHHHHHHHHHHHHHHSCTTCHHHHHHTEEEEECCSHHHHHHHHHHHHHHHHTHHHHCHHHHHHCE
T ss_pred             c-cccCCCCCHHHHHHHHHHHHHHHHHHhcccccchhhccccceEEECCCcchhhhHHHHHHHHHHHHHhhcccccccce
Confidence            2 23467888888877655431                 1247999999999999999987643              34


Q ss_pred             Ee------------------eeHHHHHHcCcEEEcCCeEEEEEeCCCCcEEEEEcCCCC----EEeCCEEEEccCCccCC
Q 012165          233 TT------------------RYEQLYQQNGVKFVKGASIKNLEAGSDGRVAAVKLEDGS----TIDADTIVIGIGAKPTV  290 (469)
Q Consensus       233 v~------------------~~~~~l~~~gV~~~~~~~v~~i~~~~~~~v~~v~~~~g~----~i~~D~vi~a~G~~p~~  290 (469)
                      ++                  .+++.|++.||++++++.|++++  +++.+....+.||+    ++++|+||||+|.+|+.
T Consensus       257 V~lve~~~~il~~~~~~~~~~~~~~L~~~GV~v~~~~~v~~v~--~~~~~~~~~~~dg~~~~~~i~ad~viwa~Gv~~~~  334 (502)
T 4g6h_A          257 IHLVEALPIVLNMFEKKLSSYAQSHLENTSIKVHLRTAVAKVE--EKQLLAKTKHEDGKITEETIPYGTLIWATGNKARP  334 (502)
T ss_dssp             EEEECSSSSSSTTSCHHHHHHHHHHHHHTTCEEETTEEEEEEC--SSEEEEEEECTTSCEEEEEEECSEEEECCCEECCH
T ss_pred             eEEeccccccccCCCHHHHHHHHHHHHhcceeeecCceEEEEe--CCceEEEEEecCcccceeeeccCEEEEccCCcCCH
Confidence            44                  56788999999999999999997  34555556677774    69999999999999983


Q ss_pred             ---chhhhcCCccc-CCCEEeCCCCCC-CCCceEEeccccccCCccCCcccccchHHHHHHHHHHHHHHHhc
Q 012165          291 ---SPFERVGLNSS-VGGIQVDGQFRT-RMPGIFAIGDVAAFPLKMYDRTARVEHVDHARQSAQHCIKALLS  357 (469)
Q Consensus       291 ---~~~~~~gl~~~-~g~i~Vd~~~~t-~~~~Vfa~GD~a~~~~~~~~~~~~~~~~~~A~~~a~~~a~~i~~  357 (469)
                         .+....++..+ +|+|.||++||| ++|||||+|||+..+.+.        ..+.|.+||+++|+||.+
T Consensus       335 ~~~~l~~~~~~~~~~~g~I~Vd~~lq~~~~~~IfAiGD~a~~~~p~--------~a~~A~qqg~~~A~ni~~  398 (502)
T 4g6h_A          335 VITDLFKKIPEQNSSKRGLAVNDFLQVKGSNNIFAIGDNAFAGLPP--------TAQVAHQEAEYLAKNFDK  398 (502)
T ss_dssp             HHHHHHHHSGGGTTCCSSEEBCTTSBBTTCSSEEECGGGEESSSCC--------CHHHHHHHHHHHHHHHHH
T ss_pred             HHHhHHHhccccccCCCceeECCccccCCCCCEEEEEcccCCCCCC--------chHHHHHHHHHHHHHHHH
Confidence               23345555544 678999999999 899999999999876532        556799999999999954

>4gcm_A TRXR, thioredoxin reductase; FAD/NAD-linked reductases, PYR redox 2 family, structural GE joint center for structural genomics, JCSG; HET: MSE FAD NAP EPE; 1.80A {Staphylococcus aureus subsp}

Probab=100.00  E-value=1.5e-36  Score=293.24  Aligned_cols=280  Identities=23%  Similarity=0.313  Sum_probs=200.6

Q ss_pred             CCCCCcEEEEcCcHHHHHHHHHHHHcCCCCCcEEEEcCCCCCCCCCCCCcccccCCCCCCCCCCCCCccccCCCCCCCCH
Q 012165           48 ANENREFVIVGGGNAAGYAARTFVEHGMADGRLCIVSKEAYAPYERPALTKGYLFPLDKKPARLPGFHTCVGSGGERQTP  127 (469)
Q Consensus        48 ~~~~~~vvIIGgG~AGl~aA~~L~~~g~~~~~V~vie~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  127 (469)
                      +.+.|||+||||||||++||.+|++.|+   +|+|||++..- ..       .+..  ....++|++....+.+......
T Consensus         3 te~~yDvvIIG~GpAGl~aA~~l~~~g~---~V~liE~~~~g-G~-------~~~~--~~i~~~p~~~~~~~~~~~~~~~   69 (312)
T 4gcm_A            3 TEIDFDIAIIGAGPAGMTAAVYASRANL---KTVMIERGIPG-GQ-------MANT--EEVENFPGFEMITGPDLSTKMF   69 (312)
T ss_dssp             -CCSEEEEEECCSHHHHHHHHHHHHTTC---CEEEEESSCTT-GG-------GGGC--SCBCCSTTCSSBCHHHHHHHHH
T ss_pred             CCCCCCEEEECCCHHHHHHHHHHHHCCC---CEEEEecCCCC-Ce-------eecc--cccCCcCCccccchHHHHHHHH
Confidence            3456999999999999999999999987   79999986321 00       1100  0111223222111111112233


Q ss_pred             hHHHHCCcEEEeCCcEEEEeCCCcEEEeCCCeEEEeccEEeccCCCCCcCCCCCCCCc---CcEEEecCHHHHHHHHHhh
Q 012165          128 EWYKEKGIEMIYQDPVTSIDIEKQTLITNSGKLLKYGSLIVATGCTASRFPEKIGGYL---PGVHYIRDVADADALISSL  204 (469)
Q Consensus       128 ~~~~~~~i~~~~~~~v~~id~~~~~v~~~~g~~~~yd~lVlAtG~~~~~~~~~~g~~~---~~v~~~~~~~~~~~~~~~~  204 (469)
                      .++.+.+..+..+..+...+.....+...+++++.||+||||||++|+ .|++||.+.   .++.+.      .......
T Consensus        70 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~liiAtGs~~~-~~~ipG~~~~~~~~v~~~------~~~~~~~  142 (312)
T 4gcm_A           70 EHAKKFGAVYQYGDIKSVEDKGEYKVINFGNKELTAKAVIIATGAEYK-KIGVPGEQELGGRGVSYC------AVCDGAF  142 (312)
T ss_dssp             HHHHHTTCEEEECCCCEEEECSSCEEEECSSCEEEEEEEEECCCEEEC-CCCCTTTTTTBTTTEESC------HHHHGGG
T ss_pred             HHHhhccccccceeeeeeeeeecceeeccCCeEEEeceeEEcccCccC-cCCCCChhhhCCccEEee------eccCccc
Confidence            455677888888777777777777888888889999999999999987 456677543   233332      1222234


Q ss_pred             hcCCeEEEEcCChHHHHHHHHHHhCCCeEe-------------eeHHHHHHcCcEEEcCCeEEEEEeCCCC--cEEEEEc
Q 012165          205 EKAKKVVVVGGGYIGMEVAAAAVGWKLDTT-------------RYEQLYQQNGVKFVKGASIKNLEAGSDG--RVAAVKL  269 (469)
Q Consensus       205 ~~~~~vvVvG~G~~g~e~A~~l~~~g~~v~-------------~~~~~l~~~gV~~~~~~~v~~i~~~~~~--~v~~v~~  269 (469)
                      .++++++|||+|++|+|+|..|+++|.+|+             ...+.+++.++.......+..+...+..  .......
T Consensus       143 ~~~k~vvViGgG~ig~E~A~~l~~~g~~Vtlv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  222 (312)
T 4gcm_A          143 FKNKRLFVIGGGDSAVEEGTFLTKFADKVTIVHRRDELRAQRILQDRAFKNDKIDFIWSHTLKSINEKDGKVGSVTLTST  222 (312)
T ss_dssp             GTTCEEEEECCSHHHHHHHHHHTTTCSEEEEECSSSSCCSCHHHHHHHHHCTTEEEECSEEEEEEEEETTEEEEEEEEET
T ss_pred             cCCCEEEEECCCHHHHHHHHHHHhcCCEEEEEecccccCcchhHHHHHHHhcCcceeeecceeeeeccccccccceeeee
Confidence            568999999999999999999999999998             2245567788888888777666543211  1111222


Q ss_pred             C--CCCEEeCCEEEEccCCccCCchhhhcCCcccCCCEEeCCCCCCCCCceEEeccccccCCccCCcccccchHHHHHHH
Q 012165          270 E--DGSTIDADTIVIGIGAKPTVSPFERVGLNSSVGGIQVDGQFRTRMPGIFAIGDVAAFPLKMYDRTARVEHVDHARQS  347 (469)
Q Consensus       270 ~--~g~~i~~D~vi~a~G~~p~~~~~~~~gl~~~~g~i~Vd~~~~t~~~~Vfa~GD~a~~~~~~~~~~~~~~~~~~A~~~  347 (469)
                      .  ++..+++|.|++++|.+|++.+++..++..++|+|.||++||||+|+|||+|||+..+..         .+..|..+
T Consensus       223 ~~~~~~~~~~d~v~~~~g~~~~~~~~~~~g~~~~~G~I~vd~~~~Ts~pgIyA~GDv~~~~~~---------~~~~A~~~  293 (312)
T 4gcm_A          223 KDGSEETHEADGVFIYIGMKPLTAPFKDLGITNDVGYIVTKDDMTTSVPGIFAAGDVRDKGLR---------QIVTATGD  293 (312)
T ss_dssp             TTCCEEEEECSEEEECSCEEESCGGGGGGTCBCTTSCBCCCTTSBCSSTTEEECSTTBSCSCC---------SHHHHHHH
T ss_pred             cCCceeEEeeeeEEeecCCCcCchhHHhcceecCCCeEeeCCCCccCCCCEEEEeecCCCcch---------HHHHHHHH
Confidence            2  335799999999999999999999999988888899999999999999999999974321         34458889


Q ss_pred             HHHHHHHHh
Q 012165          348 AQHCIKALL  356 (469)
Q Consensus       348 a~~~a~~i~  356 (469)
                      |+.||.+|.
T Consensus       294 G~~AA~~i~  302 (312)
T 4gcm_A          294 GSIAAQSAA  302 (312)
T ss_dssp             HHHHHHHHH
T ss_pred             HHHHHHHHH
Confidence            999998885

>3ab1_A Ferredoxin--NADP reductase; oxidoreductase, electron transport, FAD, flavoprotein; HET: FAD; 2.39A {Chlorobaculum tepidum}

Probab=100.00  E-value=4.8e-36  Score=295.62  Aligned_cols=300  Identities=22%  Similarity=0.314  Sum_probs=208.3

Q ss_pred             CCCCcEEEEcCcHHHHHHHHHHHHcCCCCCcEEEEcCCCCCCCCCCCCcccccCCCCCCCCCCCCCccccCCCCCCCCHh
Q 012165           49 NENREFVIVGGGNAAGYAARTFVEHGMADGRLCIVSKEAYAPYERPALTKGYLFPLDKKPARLPGFHTCVGSGGERQTPE  128 (469)
Q Consensus        49 ~~~~~vvIIGgG~AGl~aA~~L~~~g~~~~~V~vie~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  128 (469)
                      ++++||+|||||+||+++|..|++.|+   +|+|||+.+.+.....     .+.+ .......+++.............+
T Consensus        12 ~~~~dvvIIG~G~aGl~aA~~l~~~g~---~v~lie~~~~~gg~~~-----~~~~-~~~~~~~~~~~~~~~~~~~~~l~~   82 (360)
T 3ab1_A           12 HDMRDLTIIGGGPTGIFAAFQCGMNNI---SCRIIESMPQLGGQLA-----ALYP-EKHIYDVAGFPEVPAIDLVESLWA   82 (360)
T ss_dssp             -CCEEEEEECCSHHHHHHHHHHHHTTC---CEEEECSSSSSCHHHH-----HTCT-TSEECCSTTCSSEEHHHHHHHHHH
T ss_pred             CCCCCEEEECCCHHHHHHHHHHHhCCC---CEEEEecCCCCCCccc-----ccCC-CcccccCCCCCCCCHHHHHHHHHH
Confidence            346899999999999999999999887   7999999875431100     0000 000111111110000000112234


Q ss_pred             HHHHCCcEEEeCCcEEEEeCCCc---EEEeCCCeEEEeccEEeccCCC---CCcCCCCCC-C-CcC--cEEEe-cCHHHH
Q 012165          129 WYKEKGIEMIYQDPVTSIDIEKQ---TLITNSGKLLKYGSLIVATGCT---ASRFPEKIG-G-YLP--GVHYI-RDVADA  197 (469)
Q Consensus       129 ~~~~~~i~~~~~~~v~~id~~~~---~v~~~~g~~~~yd~lVlAtG~~---~~~~~~~~g-~-~~~--~v~~~-~~~~~~  197 (469)
                      .+++.+++++.+++|+.++....   .|++.+++++.||+||+|||+.   |. .+.++| . ...  ++++. ++..  
T Consensus        83 ~~~~~~~~~~~~~~v~~i~~~~~~~~~v~~~~g~~~~~~~li~AtG~~~~~~~-~~~i~g~~~~~~~~~v~~~~~~~~--  159 (360)
T 3ab1_A           83 QAERYNPDVVLNETVTKYTKLDDGTFETRTNTGNVYRSRAVLIAAGLGAFEPR-KLPQLGNIDHLTGSSVYYAVKSVE--  159 (360)
T ss_dssp             HHHTTCCEEECSCCEEEEEECTTSCEEEEETTSCEEEEEEEEECCTTCSCCBC-CCGGGCCCTTTBTTTEESSCSCGG--
T ss_pred             HHHHhCCEEEcCCEEEEEEECCCceEEEEECCCcEEEeeEEEEccCCCcCCCC-CCCCCCchhhCcCceEEEecCCHH--
Confidence            45667899999889999987643   7888888889999999999984   43 344555 2 222  24322 2111  


Q ss_pred             HHHHHhhhcCCeEEEEcCChHHHHHHHHHHhCCCeEe----------------eeHHHHHHcCcEEEcCCeEEEEEeCCC
Q 012165          198 DALISSLEKAKKVVVVGGGYIGMEVAAAAVGWKLDTT----------------RYEQLYQQNGVKFVKGASIKNLEAGSD  261 (469)
Q Consensus       198 ~~~~~~~~~~~~vvVvG~G~~g~e~A~~l~~~g~~v~----------------~~~~~l~~~gV~~~~~~~v~~i~~~~~  261 (469)
                            ...+++++|||+|.+|+|+|..|.+.+.+++                .+.+.+++.||++++++.+.+++.+ +
T Consensus       160 ------~~~~~~vvVvG~G~~g~e~A~~l~~~g~~V~lv~~~~~~~~~~~~~~~l~~~~~~~gv~i~~~~~v~~i~~~-~  232 (360)
T 3ab1_A          160 ------DFKGKRVVIVGGGDSALDWTVGLIKNAASVTLVHRGHEFQGHGKTAHEVERARANGTIDVYLETEVASIEES-N  232 (360)
T ss_dssp             ------GGTTCEEEEECSSHHHHHHHHHTTTTSSEEEEECSSSSCSSCSHHHHSSHHHHHHTSEEEESSEEEEEEEEE-T
T ss_pred             ------HcCCCcEEEECCCHHHHHHHHHHHhcCCEEEEEEcCCCCCCCHHHHHHHHHHhhcCceEEEcCcCHHHhccC-C
Confidence                  1257999999999999999999999998887                4567778889999999999999864 4


Q ss_pred             CcEEEEEcC--CC--CEEeCCEEEEccCCccCCchhhhcCCcccCCCEEeCCCCCCCCCceEEeccccccCCccCCcccc
Q 012165          262 GRVAAVKLE--DG--STIDADTIVIGIGAKPTVSPFERVGLNSSVGGIQVDGQFRTRMPGIFAIGDVAAFPLKMYDRTAR  337 (469)
Q Consensus       262 ~~v~~v~~~--~g--~~i~~D~vi~a~G~~p~~~~~~~~gl~~~~g~i~Vd~~~~t~~~~Vfa~GD~a~~~~~~~~~~~~  337 (469)
                      +.+..|.+.  +|  +++++|.||+++|++|++++++.+++..++|+|.||+++||++|+|||+|||+..+..       
T Consensus       233 ~~v~~v~~~~~~g~~~~i~~D~vi~a~G~~p~~~~l~~~~~~~~~g~i~vd~~~~t~~~~vya~GD~~~~~~~-------  305 (360)
T 3ab1_A          233 GVLTRVHLRSSDGSKWTVEADRLLILIGFKSNLGPLARWDLELYENALVVDSHMKTSVDGLYAAGDIAYYPGK-------  305 (360)
T ss_dssp             TEEEEEEEEETTCCEEEEECSEEEECCCBCCSCGGGGGSSCCEETTEEECCTTSBCSSTTEEECSTTEECTTC-------
T ss_pred             CceEEEEEEecCCCeEEEeCCEEEECCCCCCCHHHHHhhccccccCeeeecCCCcCCCCCEEEecCccCCCCc-------
Confidence            555566664  77  5799999999999999999999988887778999999999999999999999986531       


Q ss_pred             cchHHHHHHHHHHHHHHHhcCCCCCCCCCCceeeecc
Q 012165          338 VEHVDHARQSAQHCIKALLSAQTHTYDYLPYFYSRVF  374 (469)
Q Consensus       338 ~~~~~~A~~~a~~~a~~i~~~~~~~~~~~p~~~~~~~  374 (469)
                      ...+..|..+|..+|++|.+.........+++|+..+
T Consensus       306 ~~~~~~A~~~g~~aa~~i~~~l~~~~~~~~~~~~~~~  342 (360)
T 3ab1_A          306 LKIIQTGLSEATMAVRHSLSYIKPGEKIRNVFSSVKM  342 (360)
T ss_dssp             CCSHHHHHHHHHHHHHHHHHHHSCC------------
T ss_pred             cceeehhHHHHHHHHHHHHhhcCCccccCceeccchh
Confidence            2256678899999999997532211222344554433

>3lzw_A Ferredoxin--NADP reductase 2; ferredoxin reductase, FAD, NADPH, flavoprotein, oxidor; HET: FAD NAP; 1.80A {Bacillus subtilis} PDB: 3lzx_A*

Probab=100.00  E-value=9.9e-37  Score=296.71  Aligned_cols=281  Identities=17%  Similarity=0.234  Sum_probs=206.7

Q ss_pred             CCCcEEEEcCcHHHHHHHHHHHHcCCCCCcEEEEcCCCCCCCCCCCCcccccCCCCCCCCCCCCCccccCCCCCCCCHhH
Q 012165           50 ENREFVIVGGGNAAGYAARTFVEHGMADGRLCIVSKEAYAPYERPALTKGYLFPLDKKPARLPGFHTCVGSGGERQTPEW  129 (469)
Q Consensus        50 ~~~~vvIIGgG~AGl~aA~~L~~~g~~~~~V~vie~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  129 (469)
                      +++||+|||||+||+++|..|++.|+   +|+|+|+++.+....   .  ...+ .....+++++.............+.
T Consensus         6 ~~~~vvIIG~G~aGl~aA~~l~~~g~---~v~lie~~~~~gG~~---~--~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~   76 (332)
T 3lzw_A            6 KVYDITIIGGGPVGLFTAFYGGMRQA---SVKIIESLPQLGGQL---S--ALYP-EKYIYDVAGFPKIRAQELINNLKEQ   76 (332)
T ss_dssp             EEEEEEEECCSHHHHHHHHHHHHTTC---CEEEECSSSSSCHHH---H--HHCT-TSEECCSTTCSSEEHHHHHHHHHHH
T ss_pred             ccceEEEECCCHHHHHHHHHHHHCCC---CEEEEEcCCCCCcee---h--hcCC-CceEeccCCCCCCCHHHHHHHHHHH
Confidence            34799999999999999999999987   799999987643110   0  0001 0111112221111001111223345


Q ss_pred             HHHCCcEEEeCCcEEEEeCCCc---EEEeCCCeEEEeccEEeccCC---CCCcCCCCCCCCc---CcEEEecCHHHHHHH
Q 012165          130 YKEKGIEMIYQDPVTSIDIEKQ---TLITNSGKLLKYGSLIVATGC---TASRFPEKIGGYL---PGVHYIRDVADADAL  200 (469)
Q Consensus       130 ~~~~~i~~~~~~~v~~id~~~~---~v~~~~g~~~~yd~lVlAtG~---~~~~~~~~~g~~~---~~v~~~~~~~~~~~~  200 (469)
                      +++.+++++++++|+.++...+   .|.+.+++ +.||+||+|||+   .|. .|.++|...   ..+++  .+.+..  
T Consensus        77 ~~~~~~~~~~~~~v~~i~~~~~~~~~v~~~~g~-~~~d~vVlAtG~~~~~p~-~~~~~g~~~~~g~~~~~--~~~~~~--  150 (332)
T 3lzw_A           77 MAKFDQTICLEQAVESVEKQADGVFKLVTNEET-HYSKTVIITAGNGAFKPR-KLELENAEQYEGKNLHY--FVDDLQ--  150 (332)
T ss_dssp             HTTSCCEEECSCCEEEEEECTTSCEEEEESSEE-EEEEEEEECCTTSCCEEC-CCCCTTGGGGBTTTEES--SCSCGG--
T ss_pred             HHHhCCcEEccCEEEEEEECCCCcEEEEECCCE-EEeCEEEECCCCCcCCCC-CCCCCChhhccCceEEE--ecCCHH--
Confidence            5667999999999999998766   78888887 999999999999   665 455555432   23332  111111  


Q ss_pred             HHhhhcCCeEEEEcCChHHHHHHHHHHhCCCeEe------------eeHHHHHHcCcEEEcCCeEEEEEeCCCCcEEEEE
Q 012165          201 ISSLEKAKKVVVVGGGYIGMEVAAAAVGWKLDTT------------RYEQLYQQNGVKFVKGASIKNLEAGSDGRVAAVK  268 (469)
Q Consensus       201 ~~~~~~~~~vvVvG~G~~g~e~A~~l~~~g~~v~------------~~~~~l~~~gV~~~~~~~v~~i~~~~~~~v~~v~  268 (469)
                         ...+++++|||+|.+|+|+|..|.+.+.+++            ...+.+++.||++++++.+.+++.++ + +..+.
T Consensus       151 ---~~~~~~v~vvG~g~~~~e~a~~l~~~~~~v~~~~~~~~~~~~~~~~~~l~~~gv~~~~~~~v~~i~~~~-~-~~~v~  225 (332)
T 3lzw_A          151 ---KFAGRRVAILGGGDSAVDWALMLEPIAKEVSIIHRRDKFRAHEHSVENLHASKVNVLTPFVPAELIGED-K-IEQLV  225 (332)
T ss_dssp             ---GGBTCEEEEECSSHHHHHHHHHHTTTBSEEEEECSSSSCSSCHHHHHHHHHSSCEEETTEEEEEEECSS-S-CCEEE
T ss_pred             ---HcCCCEEEEECCCHhHHHHHHHHHhhCCeEEEEEecCcCCccHHHHHHHhcCCeEEEeCceeeEEecCC-c-eEEEE
Confidence               1258999999999999999999999999887            22455789999999999999998542 2 33566


Q ss_pred             cCC-----CCEEeCCEEEEccCCccCCchhhhcCCcccCCCEEeCCCCCCCCCceEEeccccccCCccCCcccccchHHH
Q 012165          269 LED-----GSTIDADTIVIGIGAKPTVSPFERVGLNSSVGGIQVDGQFRTRMPGIFAIGDVAAFPLKMYDRTARVEHVDH  343 (469)
Q Consensus       269 ~~~-----g~~i~~D~vi~a~G~~p~~~~~~~~gl~~~~g~i~Vd~~~~t~~~~Vfa~GD~a~~~~~~~~~~~~~~~~~~  343 (469)
                      +.+     ++++++|.||+++|++|++++++.++++.++|+|.||+++||+.|+|||+|||+..+..       ...+..
T Consensus       226 ~~~~~~g~~~~~~~D~vv~a~G~~p~~~~~~~~~~~~~~g~i~vd~~~~t~~~~vya~GD~~~~~~~-------~~~~~~  298 (332)
T 3lzw_A          226 LEEVKGDRKEILEIDDLIVNYGFVSSLGPIKNWGLDIEKNSIVVKSTMETNIEGFFAAGDICTYEGK-------VNLIAS  298 (332)
T ss_dssp             EEETTSCCEEEEECSEEEECCCEECCCGGGGGSSCCEETTEEECCTTSBCSSTTEEECGGGEECTTC-------CCCHHH
T ss_pred             EEecCCCceEEEECCEEEEeeccCCCchHHhhcCccccCCeEEeCCCCceecCCEEEccceecCCCC-------cceEee
Confidence            655     45799999999999999999999999988888999999999999999999999975432       225667


Q ss_pred             HHHHHHHHHHHHhc
Q 012165          344 ARQSAQHCIKALLS  357 (469)
Q Consensus       344 A~~~a~~~a~~i~~  357 (469)
                      |..+|+.+|.+|+.
T Consensus       299 A~~~g~~aa~~i~~  312 (332)
T 3lzw_A          299 GFGEAPTAVNNAKA  312 (332)
T ss_dssp             HHHHHHHHHHHHHH
T ss_pred             ehhhHHHHHHHHHH
Confidence            88899999998875

>2zbw_A Thioredoxin reductase; redox protein, oxidoreductase, structural genomics, NPPSFA, project on protein structural and functional analyses; HET: FAD; 2.10A {Thermus thermophilus}

Probab=100.00  E-value=6.9e-36  Score=291.43  Aligned_cols=282  Identities=19%  Similarity=0.259  Sum_probs=204.7

Q ss_pred             CCCCcEEEEcCcHHHHHHHHHHHHcCCCCCcEEEEcCCCCCCCCCCCCcccccCCCCCCCCCCCCCccccCCCCCCCCHh
Q 012165           49 NENREFVIVGGGNAAGYAARTFVEHGMADGRLCIVSKEAYAPYERPALTKGYLFPLDKKPARLPGFHTCVGSGGERQTPE  128 (469)
Q Consensus        49 ~~~~~vvIIGgG~AGl~aA~~L~~~g~~~~~V~vie~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  128 (469)
                      ++++||+|||||+||+++|..|++.|+   +|+|||+++.+.....     ...+ .....+.+.+.............+
T Consensus         3 ~~~~~vvIIG~G~aGl~aA~~l~~~g~---~v~lie~~~~~gg~~~-----~~~~-~~~~~~~~~~~~~~~~~~~~~l~~   73 (335)
T 2zbw_A            3 ADHTDVLIVGAGPTGLFAGFYVGMRGL---SFRFVDPLPEPGGQLT-----ALYP-EKYIYDVAGFPKVYAKDLVKGLVE   73 (335)
T ss_dssp             CCEEEEEEECCSHHHHHHHHHHHHTTC---CEEEEESSSSSCHHHH-----HTCT-TSEECCSTTCSSEEHHHHHHHHHH
T ss_pred             CCcCcEEEECCCHHHHHHHHHHHhCCC---CEEEEeCCCCCCCeee-----ccCC-CceeeccCCCCCCCHHHHHHHHHH
Confidence            446899999999999999999999887   7999999876431100     0000 000011111110000000112234


Q ss_pred             HHHHCCcEEEeCCcEEEEeCCC--cEEEeCCCeEEEeccEEeccCCC---CCcCCCCCCCC-c--CcEEE-ecCHHHHHH
Q 012165          129 WYKEKGIEMIYQDPVTSIDIEK--QTLITNSGKLLKYGSLIVATGCT---ASRFPEKIGGY-L--PGVHY-IRDVADADA  199 (469)
Q Consensus       129 ~~~~~~i~~~~~~~v~~id~~~--~~v~~~~g~~~~yd~lVlAtG~~---~~~~~~~~g~~-~--~~v~~-~~~~~~~~~  199 (469)
                      .+++.+++++.+++|..++.+.  .+|.+.+++++.||+||+|||+.   |. .|.++|.. .  .++++ +.+.   . 
T Consensus        74 ~~~~~~~~~~~~~~v~~i~~~~~~~~v~~~~g~~~~~~~lv~AtG~~~~~p~-~~~i~g~~~~~~~~~~~~~~~~---~-  148 (335)
T 2zbw_A           74 QVAPFNPVYSLGERAETLEREGDLFKVTTSQGNAYTAKAVIIAAGVGAFEPR-RIGAPGEREFEGRGVYYAVKSK---A-  148 (335)
T ss_dssp             HHGGGCCEEEESCCEEEEEEETTEEEEEETTSCEEEEEEEEECCTTSEEEEC-CCCCTTTTTTBTTTEESSCSCG---G-
T ss_pred             HHHHcCCEEEeCCEEEEEEECCCEEEEEECCCCEEEeCEEEECCCCCCCCCC-CCCCCChhhccCcEEEEecCch---h-
Confidence            4566789999899999998765  35777788889999999999994   44 34455532 1  12322 1111   1 


Q ss_pred             HHHhhhcCCeEEEEcCChHHHHHHHHHHhCCCeEe----------------eeHHHHHHcCcEEEcCCeEEEEEeCCCCc
Q 012165          200 LISSLEKAKKVVVVGGGYIGMEVAAAAVGWKLDTT----------------RYEQLYQQNGVKFVKGASIKNLEAGSDGR  263 (469)
Q Consensus       200 ~~~~~~~~~~vvVvG~G~~g~e~A~~l~~~g~~v~----------------~~~~~l~~~gV~~~~~~~v~~i~~~~~~~  263 (469)
                          ...+++++|||+|.+|+|+|..|.+.+.+++                .+.+.+++.||++++++.+.+++.  ++.
T Consensus       149 ----~~~~~~v~viG~G~~g~e~a~~l~~~g~~V~~v~~~~~~~~~~~~~~~l~~~l~~~gv~v~~~~~v~~i~~--~~~  222 (335)
T 2zbw_A          149 ----EFQGKRVLIVGGGDSAVDWALNLLDTARRITLIHRRPQFRAHEASVKELMKAHEEGRLEVLTPYELRRVEG--DER  222 (335)
T ss_dssp             ----GGTTCEEEEECSSHHHHHHHHHTTTTSSEEEEECSSSSCCSCHHHHHHHHHHHHTTSSEEETTEEEEEEEE--SSS
T ss_pred             ----hcCCCEEEEECCCHHHHHHHHHHHhhCCEEEEEEcCCccCccHHHHHHHHhccccCCeEEecCCcceeEcc--CCC
Confidence                1257999999999999999999999998887                345566667999999999999986  344


Q ss_pred             EEEEEcC---CC--CEEeCCEEEEccCCccCCchhhhcCCcccCCCEEeCCCCCCCCCceEEeccccccCCccCCccccc
Q 012165          264 VAAVKLE---DG--STIDADTIVIGIGAKPTVSPFERVGLNSSVGGIQVDGQFRTRMPGIFAIGDVAAFPLKMYDRTARV  338 (469)
Q Consensus       264 v~~v~~~---~g--~~i~~D~vi~a~G~~p~~~~~~~~gl~~~~g~i~Vd~~~~t~~~~Vfa~GD~a~~~~~~~~~~~~~  338 (469)
                      +..+.+.   +|  +++++|.||+++|++|+++++++++++.++|+|.||+++||+.|+|||+|||+..+..       .
T Consensus       223 ~~~v~~~~~~~g~~~~i~~D~vi~a~G~~p~~~~l~~~~~~~~~g~i~vd~~~~t~~~~vya~GD~~~~~~~-------~  295 (335)
T 2zbw_A          223 VRWAVVFHNQTQEELALEVDAVLILAGYITKLGPLANWGLALEKNKIKVDTTMATSIPGVYACGDIVTYPGK-------L  295 (335)
T ss_dssp             EEEEEEEETTTCCEEEEECSEEEECCCEEEECGGGGGSCCCEETTEEECCTTCBCSSTTEEECSTTEECTTC-------C
T ss_pred             eeEEEEEECCCCceEEEecCEEEEeecCCCCchHhhhcceeccCCeeeeCCCCCCCCCCEEEeccccccCcc-------h
Confidence            4456665   67  5799999999999999999999999887778999999999999999999999986532       2


Q ss_pred             chHHHHHHHHHHHHHHHhc
Q 012165          339 EHVDHARQSAQHCIKALLS  357 (469)
Q Consensus       339 ~~~~~A~~~a~~~a~~i~~  357 (469)
                      ..+..|..+|..+|.+|.+
T Consensus       296 ~~~~~A~~~g~~aa~~i~~  314 (335)
T 2zbw_A          296 PLIVLGFGEAAIAANHAAA  314 (335)
T ss_dssp             CCHHHHHHHHHHHHHHHHH
T ss_pred             hhhhhhHHHHHHHHHHHHH
Confidence            2566788899999999875

>4a5l_A Thioredoxin reductase; oxidoreductase, redox metabolism, oxidative stress; HET: NDP FAD; 1.66A {Entamoeba histolytica} PDB: 4a65_A*

Probab=100.00  E-value=3.8e-36  Score=290.47  Aligned_cols=286  Identities=20%  Similarity=0.213  Sum_probs=195.5

Q ss_pred             CCCCcEEEEcCcHHHHHHHHHHHHcCCCCCcEEEEcCCCCCCCCCCCCcccccCCCCCCCCCCCCCcc-ccCCCCCCCCH
Q 012165           49 NENREFVIVGGGNAAGYAARTFVEHGMADGRLCIVSKEAYAPYERPALTKGYLFPLDKKPARLPGFHT-CVGSGGERQTP  127 (469)
Q Consensus        49 ~~~~~vvIIGgG~AGl~aA~~L~~~g~~~~~V~vie~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~  127 (469)
                      +.+|||+||||||||++||.+|+++|+   +|+|||++...... +.   +.+. ......+++++.. ..+.+...+..
T Consensus         2 ~~~yDvvIIG~GpAGl~AA~~la~~g~---~v~liE~~~~gg~~-~~---G~~~-~~~~i~~~~g~~~~i~~~~l~~~~~   73 (314)
T 4a5l_A            2 SNIHDVVIIGSGPAAHTAAIYLGRSSL---KPVMYEGFMAGGVA-AG---GQLT-TTTIIENFPGFPNGIDGNELMMNMR   73 (314)
T ss_dssp             CCCEEEEEECCSHHHHHHHHHHHHTTC---CCEEECCSSGGGCC-TT---CGGG-GSSEECCSTTCTTCEEHHHHHHHHH
T ss_pred             CCCCcEEEECCCHHHHHHHHHHHHCCC---CEEEEecCCCCCcc-cC---CCcC-ChHHhhhccCCcccCCHHHHHHHHH
Confidence            346899999999999999999999998   79999987542211 00   0010 0111122333221 11111112234


Q ss_pred             hHHHHCCcEEEeCCcEEEEeCCC--cEEEeCCCeEEEeccEEeccCCCCCcCCCCCCCCcCcEEEecCHHHHHHHHHhhh
Q 012165          128 EWYKEKGIEMIYQDPVTSIDIEK--QTLITNSGKLLKYGSLIVATGCTASRFPEKIGGYLPGVHYIRDVADADALISSLE  205 (469)
Q Consensus       128 ~~~~~~~i~~~~~~~v~~id~~~--~~v~~~~g~~~~yd~lVlAtG~~~~~~~~~~g~~~~~v~~~~~~~~~~~~~~~~~  205 (469)
                      +.+++.++.+... .+.......  ..+.+.++.++.||+||||||++|+ .|++||.+.............+. .....
T Consensus        74 ~~~~~~~~~~~~~-~v~~~~~~~~~~~~~~~~~~~~~~~~liiATG~~~~-~~~ipG~~~~~~~~~~~~~~~~~-~~~~~  150 (314)
T 4a5l_A           74 TQSEKYGTTIITE-TIDHVDFSTQPFKLFTEEGKEVLTKSVIIATGATAK-RMHVPGEDKYWQNGVSACAICDG-AVPIF  150 (314)
T ss_dssp             HHHHHTTCEEECC-CEEEEECSSSSEEEEETTCCEEEEEEEEECCCEEEC-CCCCTTHHHHBTTTEESCHHHHT-TSGGG
T ss_pred             HHHhhcCcEEEEe-EEEEeecCCCceEEEECCCeEEEEeEEEEccccccc-ccCCCccccccccceeeehhhhh-hhhhc
Confidence            4566788888764 666665543  4677888889999999999999987 45666644322212221122222 22234


Q ss_pred             cCCeEEEEcCChHHHHHHHHHHhCCCeEe-------------eeHHHHHHcCcEEEcCCeEEEEEeCCCCcEEEEE----
Q 012165          206 KAKKVVVVGGGYIGMEVAAAAVGWKLDTT-------------RYEQLYQQNGVKFVKGASIKNLEAGSDGRVAAVK----  268 (469)
Q Consensus       206 ~~~~vvVvG~G~~g~e~A~~l~~~g~~v~-------------~~~~~l~~~gV~~~~~~~v~~i~~~~~~~v~~v~----  268 (469)
                      .+++++|||+|++|+|+|..|+++|.+|+             ...+.....+++.+....+.++... +....++.    
T Consensus       151 ~~~~vvViGgG~ig~e~A~~l~~~G~~Vt~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~-~~~~~~~~~~~~  229 (314)
T 4a5l_A          151 RNKVLMVVGGGDAAMEEALHLTKYGSKVIILHRRDAFRASKTMQERVLNHPKIEVIWNSELVELEGD-GDLLNGAKIHNL  229 (314)
T ss_dssp             TTSEEEEECSSHHHHHHHHHHTTTSSEEEEECSSSSCCSCHHHHHHHHTCTTEEEECSEEEEEEEES-SSSEEEEEEEET
T ss_pred             CCCeEEEECCChHHHHHHHHHHHhCCeeeeecccccccccchhhhhhhcccceeeEeeeeeEEEEee-eeccceeEEeec
Confidence            68999999999999999999999999998             2234556678999999888888754 23233333    


Q ss_pred             -cCCCCEEeCCEEEEccCCccCCchhhhcCCcccCCCEEeCCCCCCCCCceEEeccccccCCccCCcccccchHHHHHHH
Q 012165          269 -LEDGSTIDADTIVIGIGAKPTVSPFERVGLNSSVGGIQVDGQFRTRMPGIFAIGDVAAFPLKMYDRTARVEHVDHARQS  347 (469)
Q Consensus       269 -~~~g~~i~~D~vi~a~G~~p~~~~~~~~gl~~~~g~i~Vd~~~~t~~~~Vfa~GD~a~~~~~~~~~~~~~~~~~~A~~~  347 (469)
                       ..+++++++|.|++++|++||++++... +..+++++.||+++|||+|+|||+|||+..+..         .+..|..+
T Consensus       230 ~~~~~~~i~~d~vi~a~G~~pn~~~l~~~-~~~~~~G~iv~~~~~Ts~pgIyA~GDv~~~~~~---------~~~~A~~~  299 (314)
T 4a5l_A          230 VSGEYKVVPVAGLFYAIGHSPNSKFLGGQ-VKTADDGYILTEGPKTSVDGVFACGDVCDRVYR---------QAIVAAGS  299 (314)
T ss_dssp             TTCCEEEEECSEEEECSCEEESCGGGTTS-SCBCTTSCBCCBTTBCSSTTEEECSTTTCSSCC---------CHHHHHHH
T ss_pred             ccccceeeccccceEecccccChhHhccc-ceEcCCeeEeCCCCccCCCCEEEEEeccCCcch---------HHHHHHHH
Confidence             2345789999999999999999988653 555555677999999999999999999986542         23347788


Q ss_pred             HHHHHHHHh
Q 012165          348 AQHCIKALL  356 (469)
Q Consensus       348 a~~~a~~i~  356 (469)
                      |+.||.++.
T Consensus       300 G~~AA~~~~  308 (314)
T 4a5l_A          300 GCMAALSCE  308 (314)
T ss_dssp             HHHHHHHHH
T ss_pred             HHHHHHHHH
Confidence            888887764

>3f8d_A Thioredoxin reductase (TRXB-3); redox protein, nucleotide binding, FAD, flavoprotein, oxidoreductase; HET: FAD; 1.40A {Sulfolobus solfataricus} PDB: 3f8p_A* 3f8r_A*

Probab=100.00  E-value=4.7e-35  Score=283.59  Aligned_cols=277  Identities=22%  Similarity=0.244  Sum_probs=203.9

Q ss_pred             CCCcEEEEcCcHHHHHHHHHHHHcCCCCCcEEEEcCCCCCCCCCCCCcccccCCCCCCCCCCCCCccccCCCCCCCCHhH
Q 012165           50 ENREFVIVGGGNAAGYAARTFVEHGMADGRLCIVSKEAYAPYERPALTKGYLFPLDKKPARLPGFHTCVGSGGERQTPEW  129 (469)
Q Consensus        50 ~~~~vvIIGgG~AGl~aA~~L~~~g~~~~~V~vie~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  129 (469)
                      +++||+|||||+||+++|..|++.|+   +|+|||++  .+..       +..  ......++.+.............++
T Consensus        14 ~~~~vvIIG~G~aGl~aA~~l~~~g~---~v~lie~~--~gg~-------~~~--~~~~~~~~~~~~~~~~~~~~~~~~~   79 (323)
T 3f8d_A           14 EKFDVIIVGLGPAAYGAALYSARYML---KTLVIGET--PGGQ-------LTE--AGIVDDYLGLIEIQASDMIKVFNKH   79 (323)
T ss_dssp             CEEEEEEECCSHHHHHHHHHHHHTTC---CEEEEESS--TTGG-------GGG--CCEECCSTTSTTEEHHHHHHHHHHH
T ss_pred             CccCEEEECccHHHHHHHHHHHHCCC---cEEEEecc--CCCe-------ecc--cccccccCCCCCCCHHHHHHHHHHH
Confidence            45899999999999999999999987   79999997  1110       000  0001111111110000111223455


Q ss_pred             HHHCCcEEEeCCcEEEEeCCC--cEEEeCCCeEEEeccEEeccCCCCCcCCCCCCCCc---CcEEEecCHHHHHHHHHhh
Q 012165          130 YKEKGIEMIYQDPVTSIDIEK--QTLITNSGKLLKYGSLIVATGCTASRFPEKIGGYL---PGVHYIRDVADADALISSL  204 (469)
Q Consensus       130 ~~~~~i~~~~~~~v~~id~~~--~~v~~~~g~~~~yd~lVlAtG~~~~~~~~~~g~~~---~~v~~~~~~~~~~~~~~~~  204 (469)
                      +++.+++++. ++|..++.+.  ..+.+.++.++.||+||+|||+.|. .|.+++...   +++++..      ......
T Consensus        80 ~~~~~v~~~~-~~v~~i~~~~~~~~v~~~~g~~~~~d~lvlAtG~~~~-~~~i~g~~~~~~~~~~~~~------~~~~~~  151 (323)
T 3f8d_A           80 IEKYEVPVLL-DIVEKIENRGDEFVVKTKRKGEFKADSVILGIGVKRR-KLGVPGEQEFAGRGISYCS------VADAPL  151 (323)
T ss_dssp             HHTTTCCEEE-SCEEEEEEC--CEEEEESSSCEEEEEEEEECCCCEEC-CCCCTTTTTTBTTTEESCH------HHHGGG
T ss_pred             HHHcCCEEEE-EEEEEEEecCCEEEEEECCCCEEEcCEEEECcCCCCc-cCCCCchhhhcCCceEEec------cCCHhH
Confidence            6678999998 7999998774  3678888889999999999999986 455666543   4554321      112234


Q ss_pred             hcCCeEEEEcCChHHHHHHHHHHhCCCeEe-------------eeHHHHHHcCcEEEcCCeEEEEEeCCCCcEEEEEcCC
Q 012165          205 EKAKKVVVVGGGYIGMEVAAAAVGWKLDTT-------------RYEQLYQQNGVKFVKGASIKNLEAGSDGRVAAVKLED  271 (469)
Q Consensus       205 ~~~~~vvVvG~G~~g~e~A~~l~~~g~~v~-------------~~~~~l~~~gV~~~~~~~v~~i~~~~~~~v~~v~~~~  271 (469)
                      ..+++++|+|+|.+|+|+|..|.+.+.+++             .+++.+++.||++++++.+.+++.+  +.+..+.+.+
T Consensus       152 ~~~~~v~vvG~G~~~~e~a~~l~~~g~~v~~~~~~~~~~~~~~~~~~~~~~~gv~~~~~~~v~~i~~~--~~~~~v~~~~  229 (323)
T 3f8d_A          152 FKNRVVAVIGGGDSALEGAEILSSYSTKVYLIHRRDTFKAQPIYVETVKKKPNVEFVLNSVVKEIKGD--KVVKQVVVEN  229 (323)
T ss_dssp             GTTCEEEEECCSHHHHHHHHHHHHHSSEEEEECSSSSCCSCHHHHHHHHTCTTEEEECSEEEEEEEES--SSEEEEEEEE
T ss_pred             cCCCEEEEECCCHHHHHHHHHHHHhCCeEEEEEeCCCCCcCHHHHHHHHhCCCcEEEeCCEEEEEecc--CceeEEEEEE
Confidence            568999999999999999999999999887             2233444559999999999999853  4555677765


Q ss_pred             ---CC--EEeCCEEEEccCCccCCchhhhcCCccc-CCCEEeCCCCCCCCCceEEeccccccCCccCCcccccchHHHHH
Q 012165          272 ---GS--TIDADTIVIGIGAKPTVSPFERVGLNSS-VGGIQVDGQFRTRMPGIFAIGDVAAFPLKMYDRTARVEHVDHAR  345 (469)
Q Consensus       272 ---g~--~i~~D~vi~a~G~~p~~~~~~~~gl~~~-~g~i~Vd~~~~t~~~~Vfa~GD~a~~~~~~~~~~~~~~~~~~A~  345 (469)
                         |+  ++++|.||+++|++|++++++.++++.+ +|+|.||++++|+.|+|||+|||+..+..       ...+..|.
T Consensus       230 ~~~g~~~~~~~D~vv~a~G~~p~~~~~~~~g~~~~~~g~i~vd~~~~t~~~~vya~GD~~~~~~~-------~~~~~~A~  302 (323)
T 3f8d_A          230 LKTGEIKELNVNGVFIEIGFDPPTDFAKSNGIETDTNGYIKVDEWMRTSVPGVFAAGDCTSAWLG-------FRQVITAV  302 (323)
T ss_dssp             TTTCCEEEEECSEEEECCCEECCHHHHHHTTCCBCTTSSBCCCTTCBCSSTTEEECSTTBSTTTT-------CCCHHHHH
T ss_pred             CCCCceEEEEcCEEEEEECCCCChhHHhhcCeeecCCCcEecCCCceecCCCEEEcceecCCCCc-------ccceeehh
Confidence               76  7999999999999999999999998865 68899999999999999999999986410       22566788


Q ss_pred             HHHHHHHHHHhc
Q 012165          346 QSAQHCIKALLS  357 (469)
Q Consensus       346 ~~a~~~a~~i~~  357 (469)
                      .+|+.+|.+|..
T Consensus       303 ~~g~~aa~~i~~  314 (323)
T 3f8d_A          303 AQGAVAATSAYR  314 (323)
T ss_dssp             HHHHHHHHHHHH
T ss_pred             hHHHHHHHHHHH
Confidence            888888888853

>3fbs_A Oxidoreductase; structural genomics, PSI2, MCSG, protein STR initiative, midwest center for structural genomics; HET: FAD; 2.15A {Agrobacterium tumefaciens}

Probab=100.00  E-value=3e-35  Score=281.59  Aligned_cols=267  Identities=22%  Similarity=0.197  Sum_probs=198.3

Q ss_pred             CCcEEEEcCcHHHHHHHHHHHHcCCCCCcEEEEcCCCCCCCCCCCCcccccCCCCCCCCCCCCCccccCCCCCCCCHhHH
Q 012165           51 NREFVIVGGGNAAGYAARTFVEHGMADGRLCIVSKEAYAPYERPALTKGYLFPLDKKPARLPGFHTCVGSGGERQTPEWY  130 (469)
Q Consensus        51 ~~~vvIIGgG~AGl~aA~~L~~~g~~~~~V~vie~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  130 (469)
                      ++||+|||||+||+++|..|++.|+   +|+|+|+++..... +.....+.           ...............+.+
T Consensus         2 ~~~vvIIG~G~aGl~aA~~l~~~g~---~v~lie~~~~~~~~-~~~~~~~~-----------~~~~~~~~~~~~~~~~~~   66 (297)
T 3fbs_A            2 KFDVIIIGGSYAGLSAALQLGRARK---NILLVDAGERRNRF-ASHSHGFL-----------GQDGKAPGEIIAEARRQI   66 (297)
T ss_dssp             CEEEEEECCSHHHHHHHHHHHHTTC---CEEEEECCCCGGGG-CSCCCSST-----------TCTTCCHHHHHHHHHHHH
T ss_pred             CCCEEEECCCHHHHHHHHHHHhCCC---CEEEEeCCCccccc-chhhcCCc-----------CCCCCCHHHHHHHHHHHH
Confidence            4799999999999999999999987   79999987532110 11111111           000000000011223334


Q ss_pred             HHC-CcEEEeCCcEEEEeCCC--cEEEeCCCeEEEeccEEeccCCCCCcCCCCCCCCc---CcEEEecCHHHHHHHHHhh
Q 012165          131 KEK-GIEMIYQDPVTSIDIEK--QTLITNSGKLLKYGSLIVATGCTASRFPEKIGGYL---PGVHYIRDVADADALISSL  204 (469)
Q Consensus       131 ~~~-~i~~~~~~~v~~id~~~--~~v~~~~g~~~~yd~lVlAtG~~~~~~~~~~g~~~---~~v~~~~~~~~~~~~~~~~  204 (469)
                      .+. +++++. .+|+.++++.  ..|++.+++++.||+||+|||+.|+ .|.++|...   .++++..      ......
T Consensus        67 ~~~~~v~~~~-~~v~~i~~~~~~~~v~~~~g~~~~~d~vviAtG~~~~-~~~~~g~~~~~~~~~~~~~------~~~~~~  138 (297)
T 3fbs_A           67 ERYPTIHWVE-GRVTDAKGSFGEFIVEIDGGRRETAGRLILAMGVTDE-LPEIAGLRERWGSAVFHCP------YCHGYE  138 (297)
T ss_dssp             TTCTTEEEEE-SCEEEEEEETTEEEEEETTSCEEEEEEEEECCCCEEE-CCCCBTTGGGBTTTEESCH------HHHTGG
T ss_pred             HhcCCeEEEE-eEEEEEEEcCCeEEEEECCCCEEEcCEEEECCCCCCC-CCCCCCchhhcCCeeEEcc------cCcchh
Confidence            444 788776 4999998765  4788888989999999999999886 466666432   3333321      111223


Q ss_pred             hcCCeEEEEcCChHHHHHHHHHHhCCCeEe-----------eeHHHHHHcCcEEEcCCeEEEEEeCCCCcEEEEEcCCCC
Q 012165          205 EKAKKVVVVGGGYIGMEVAAAAVGWKLDTT-----------RYEQLYQQNGVKFVKGASIKNLEAGSDGRVAAVKLEDGS  273 (469)
Q Consensus       205 ~~~~~vvVvG~G~~g~e~A~~l~~~g~~v~-----------~~~~~l~~~gV~~~~~~~v~~i~~~~~~~v~~v~~~~g~  273 (469)
                      ..+++++|||+|.+|+|+|..|.+++ +++           .+.+.+++.||+++. +.+++++.+  +   .+.+++|+
T Consensus       139 ~~~~~v~vvG~G~~~~e~a~~l~~~g-~v~~v~~~~~~~~~~~~~~l~~~gv~i~~-~~v~~i~~~--~---~v~~~~g~  211 (297)
T 3fbs_A          139 LDQGKIGVIAASPMAIHHALMLPDWG-ETTFFTNGIVEPDADQHALLAARGVRVET-TRIREIAGH--A---DVVLADGR  211 (297)
T ss_dssp             GTTCEEEEECCSTTHHHHHHHGGGTS-EEEEECTTTCCCCHHHHHHHHHTTCEEEC-SCEEEEETT--E---EEEETTSC
T ss_pred             hcCCEEEEEecCccHHHHHHHhhhcC-cEEEEECCCCCCCHHHHHHHHHCCcEEEc-ceeeeeecC--C---eEEeCCCC
Confidence            46899999999999999999999998 887           456788999999996 889999742  2   57889999


Q ss_pred             EEeCCEEEEccCCccCCchhhhcCCcccC---C-CEEeCCCCCCCCCceEEeccccccCCccCCcccccchHHHHHHHHH
Q 012165          274 TIDADTIVIGIGAKPTVSPFERVGLNSSV---G-GIQVDGQFRTRMPGIFAIGDVAAFPLKMYDRTARVEHVDHARQSAQ  349 (469)
Q Consensus       274 ~i~~D~vi~a~G~~p~~~~~~~~gl~~~~---g-~i~Vd~~~~t~~~~Vfa~GD~a~~~~~~~~~~~~~~~~~~A~~~a~  349 (469)
                      ++++|.||+++|++|+++++++++++.+.   | ++.||++++|+.|+|||+|||+..+.          .+..|..+|+
T Consensus       212 ~~~~D~vi~a~G~~p~~~~~~~~g~~~~~~~~G~~i~vd~~~~t~~~~vya~GD~~~~~~----------~~~~A~~~g~  281 (297)
T 3fbs_A          212 SIALAGLFTQPKLRITVDWIEKLGCAVEEGPMGSTIVTDPMKQTTARGIFACGDVARPAG----------SVALAVGDGA  281 (297)
T ss_dssp             EEEESEEEECCEEECCCSCHHHHTCCEEEETTEEEECCCTTCBCSSTTEEECSGGGCTTC----------CHHHHHHHHH
T ss_pred             EEEEEEEEEccCcccCchhHHhcCCccccCCCCceEEeCCCCccCCCCEEEEeecCCchH----------HHHHHHHhHH
Confidence            99999999999999999999999887653   4 79999999999999999999998633          4566888888


Q ss_pred             HHHHHHhc
Q 012165          350 HCIKALLS  357 (469)
Q Consensus       350 ~~a~~i~~  357 (469)
                      .+|.+|..
T Consensus       282 ~aa~~i~~  289 (297)
T 3fbs_A          282 MAGAAAHR  289 (297)
T ss_dssp             HHHHHHHH
T ss_pred             HHHHHHHH
Confidence            88888753

>3cty_A Thioredoxin reductase; FAD, oxidoreductase, flavin, flavoprotein; HET: FAD; 2.35A {Thermoplasma acidophilum}

Probab=100.00  E-value=1.1e-34  Score=280.96  Aligned_cols=276  Identities=25%  Similarity=0.299  Sum_probs=202.0

Q ss_pred             CCCcEEEEcCcHHHHHHHHHHHHcCCCCCcEEEEcCCCCCCCCCCCCcccccCCCCCCCCCCCCCccccCCCCCCCCHhH
Q 012165           50 ENREFVIVGGGNAAGYAARTFVEHGMADGRLCIVSKEAYAPYERPALTKGYLFPLDKKPARLPGFHTCVGSGGERQTPEW  129 (469)
Q Consensus        50 ~~~~vvIIGgG~AGl~aA~~L~~~g~~~~~V~vie~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  129 (469)
                      +.+||+|||||+||+++|..|++.|+   +|+|+|+..... . .....        ....++++.............+.
T Consensus        15 ~~~dvvIIG~G~aGl~aA~~l~~~g~---~v~lie~~~~gg-~-~~~~~--------~~~~~~~~~~~~~~~~~~~~~~~   81 (319)
T 3cty_A           15 RDFDVVIVGAGAAGFSAAVYAARSGF---SVAILDKAVAGG-L-TAEAP--------LVENYLGFKSIVGSELAKLFADH   81 (319)
T ss_dssp             CEEEEEEECCSHHHHHHHHHHHHTTC---CEEEEESSSTTG-G-GGGCS--------CBCCBTTBSSBCHHHHHHHHHHH
T ss_pred             CCCcEEEECcCHHHHHHHHHHHhCCC---cEEEEeCCCCCc-c-ccccc--------hhhhcCCCcccCHHHHHHHHHHH
Confidence            45899999999999999999999987   799999853211 0 00000        00111111000000001123345


Q ss_pred             HHHCCcEEEeCCcEEEEeCCCc--EEEeCCCeEEEeccEEeccCCCCCcCCCCCCCCc---CcEEEecCHHHHHHHHHhh
Q 012165          130 YKEKGIEMIYQDPVTSIDIEKQ--TLITNSGKLLKYGSLIVATGCTASRFPEKIGGYL---PGVHYIRDVADADALISSL  204 (469)
Q Consensus       130 ~~~~~i~~~~~~~v~~id~~~~--~v~~~~g~~~~yd~lVlAtG~~~~~~~~~~g~~~---~~v~~~~~~~~~~~~~~~~  204 (469)
                      +++.+++++. .+|..++.+..  +|.+ ++.++.||+||+|||+.|+ .|.+++...   .++++...      .....
T Consensus        82 ~~~~~v~~~~-~~v~~i~~~~~~~~v~~-~~~~~~~~~li~AtG~~~~-~~~i~g~~~~~~~~~~~~~~------~~~~~  152 (319)
T 3cty_A           82 AANYAKIREG-VEVRSIKKTQGGFDIET-NDDTYHAKYVIITTGTTHK-HLGVKGESEYFGKGTSYCST------CDGYL  152 (319)
T ss_dssp             HHTTSEEEET-CCEEEEEEETTEEEEEE-SSSEEEEEEEEECCCEEEC-CCCCBTTTTTBTTTEESCHH------HHGGG
T ss_pred             HHHcCCEEEE-eeEEEEEEeCCEEEEEE-CCCEEEeCEEEECCCCCcc-cCCCCChHHhCCceEEEEEe------cchhh
Confidence            5677999888 68999987665  5666 5567999999999999876 455555421   34443321      12234


Q ss_pred             hcCCeEEEEcCChHHHHHHHHHHhCCCeEe------------eeHHHHHHcCcEEEcCCeEEEEEeCCCCcEEEEEcC--
Q 012165          205 EKAKKVVVVGGGYIGMEVAAAAVGWKLDTT------------RYEQLYQQNGVKFVKGASIKNLEAGSDGRVAAVKLE--  270 (469)
Q Consensus       205 ~~~~~vvVvG~G~~g~e~A~~l~~~g~~v~------------~~~~~l~~~gV~~~~~~~v~~i~~~~~~~v~~v~~~--  270 (469)
                      ..+++++|||+|.+|+|+|..|.+++.+++            .+.+.+++.||+++++++++++..+ ++++..+.+.  
T Consensus       153 ~~~~~v~viG~G~~g~e~a~~l~~~g~~V~~i~~~~~~~~~~~l~~~l~~~gv~i~~~~~v~~i~~~-~~~v~~v~~~~~  231 (319)
T 3cty_A          153 FKGKRVVTIGGGNSGAIAAISMSEYVKNVTIIEYMPKYMCENAYVQEIKKRNIPYIMNAQVTEIVGD-GKKVTGVKYKDR  231 (319)
T ss_dssp             GBTSEEEEECCSHHHHHHHHHHTTTBSEEEEECSSSSCCSCHHHHHHHHHTTCCEECSEEEEEEEES-SSSEEEEEEEET
T ss_pred             cCCCeEEEECCCHHHHHHHHHHHhhCCcEEEEEcCCccCCCHHHHHHHhcCCcEEEcCCeEEEEecC-CceEEEEEEEEc
Confidence            568999999999999999999999998887            2456677899999999999999864 4445566664  


Q ss_pred             -CCC--EEeCCEEEEccCCccCCchhhhcCCccc-CCCEEeCCCCCCCCCceEEeccccccCCccCCcccccchHHHHHH
Q 012165          271 -DGS--TIDADTIVIGIGAKPTVSPFERVGLNSS-VGGIQVDGQFRTRMPGIFAIGDVAAFPLKMYDRTARVEHVDHARQ  346 (469)
Q Consensus       271 -~g~--~i~~D~vi~a~G~~p~~~~~~~~gl~~~-~g~i~Vd~~~~t~~~~Vfa~GD~a~~~~~~~~~~~~~~~~~~A~~  346 (469)
                       +|+  ++++|.||+|+|++||++++++++++.+ +|+|.||+++||+.|+|||+|||+..+.         ..+..|..
T Consensus       232 ~~g~~~~i~~D~vi~a~G~~p~~~~l~~~gl~~~~~g~i~vd~~~~t~~~~vya~GD~~~~~~---------~~~~~A~~  302 (319)
T 3cty_A          232 TTGEEKLIETDGVFIYVGLIPQTSFLKDSGVKLDERGYIVVDSRQRTSVPGVYAAGDVTSGNF---------AQIASAVG  302 (319)
T ss_dssp             TTCCEEEECCSEEEECCCEEECCGGGTTSCCCBCTTSCBCCCTTCBCSSTTEEECSTTBTTCC---------CCHHHHHH
T ss_pred             CCCceEEEecCEEEEeeCCccChHHHhhccccccCCccEeCCCCCccCCCCEEEeecccCcch---------hhHHHHHH
Confidence             675  6999999999999999999998888765 5889999999999999999999998632         14567899


Q ss_pred             HHHHHHHHHhc
Q 012165          347 SAQHCIKALLS  357 (469)
Q Consensus       347 ~a~~~a~~i~~  357 (469)
                      +|+.+|.+|..
T Consensus       303 ~g~~aa~~i~~  313 (319)
T 3cty_A          303 DGCKAALSLYS  313 (319)
T ss_dssp             HHHHHHHHHHH
T ss_pred             HHHHHHHHHHH
Confidence            99999999864

>3hyw_A Sulfide-quinone reductase; monotopic membrane protein, flavoprotein, polysulfur, oxidoreductase; HET: FAD DCQ LMT; 2.00A {Aquifex aeolicus} PDB: 3hyv_A* 3hyx_A*

Probab=100.00  E-value=1.6e-35  Score=298.36  Aligned_cols=283  Identities=20%  Similarity=0.237  Sum_probs=200.8

Q ss_pred             CCcEEEEcCcHHHHHHHHHHHHcCCCCCcEEEEcCCCCCCCCCCCCcccccCCCCCCCCCCCCCccccCCCCCCCCHhHH
Q 012165           51 NREFVIVGGGNAAGYAARTFVEHGMADGRLCIVSKEAYAPYERPALTKGYLFPLDKKPARLPGFHTCVGSGGERQTPEWY  130 (469)
Q Consensus        51 ~~~vvIIGgG~AGl~aA~~L~~~g~~~~~V~vie~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  130 (469)
                      .++|||||||+||+++|.+|++.+. +.+|||||+++++.|. |.+.. +.... ....++           .....+++
T Consensus         2 ~K~VvIIGgG~aGl~aA~~L~~~~~-~~~VtlI~~~~~~~~~-p~l~~-v~~g~-~~~~~i-----------~~~~~~~~   66 (430)
T 3hyw_A            2 AKHVVVIGGGVGGIATAYNLRNLMP-DLKITLISDRPYFGFT-PAFPH-LAMGW-RKFEDI-----------SVPLAPLL   66 (430)
T ss_dssp             CCEEEEECSSHHHHHHHHHHHHHCT-TCEEEEECSSSEEECG-GGHHH-HHHTC-SCGGGS-----------EEESTTTG
T ss_pred             CCcEEEECCCHHHHHHHHHHhccCc-CCeEEEEcCCCCCccC-ccHHH-HhcCC-CCHHHh-----------hhcHHHHH
Confidence            3689999999999999999999875 7899999999998774 65543 22111 111111           12334566


Q ss_pred             HHCCcEEEeCCcEEEEeCCCcEEEeCCCeEEEeccEEeccCCCCCcCCCCCCCCcCcEEEecCHHHHHHHHHhh---hcC
Q 012165          131 KEKGIEMIYQDPVTSIDIEKQTLITNSGKLLKYGSLIVATGCTASRFPEKIGGYLPGVHYIRDVADADALISSL---EKA  207 (469)
Q Consensus       131 ~~~~i~~~~~~~v~~id~~~~~v~~~~g~~~~yd~lVlAtG~~~~~~~~~~g~~~~~v~~~~~~~~~~~~~~~~---~~~  207 (469)
                      ++.+++++.+ +|++||+++++|++++|++++||+||||||+++. + .++|.. ++.+.+.+..++.++++.+   ...
T Consensus        67 ~~~gv~~i~~-~v~~Id~~~~~V~~~~g~~i~YD~LViAtG~~~~-~-~i~G~~-e~~~~~~~~~~a~~~~~~l~~~~~~  142 (430)
T 3hyw_A           67 PKFNIEFINE-KAESIDPDANTVTTQSGKKIEYDYLVIATGPKLV-F-GAEGQE-ENSTSICTAEHALETQKKLQELYAN  142 (430)
T ss_dssp             GGGTEEEECS-CEEEEETTTTEEEETTCCEEECSEEEECCCCEEE-C-CSBTHH-HHSCCCSSHHHHHHHHHHHHHHHHS
T ss_pred             HHCCcEEEEe-EEEEEECCCCEEEECCCCEEECCEEEEeCCCCcc-C-CccCcc-cCcCCcccHHHHHHHHHHHHhhccC
Confidence            7889999885 8999999999999999999999999999999853 3 345532 3345667777777665544   345


Q ss_pred             CeEEEEcCCh------HHHHHH----HHHHhCCC----eEe---------------------eeHHHHHHcCcEEEcCCe
Q 012165          208 KKVVVVGGGY------IGMEVA----AAAVGWKL----DTT---------------------RYEQLYQQNGVKFVKGAS  252 (469)
Q Consensus       208 ~~vvVvG~G~------~g~e~A----~~l~~~g~----~v~---------------------~~~~~l~~~gV~~~~~~~  252 (469)
                      +.++|+|++.      .+.|++    ..+.+.+.    +++                     .+++.++++||++++++.
T Consensus       143 ~~~vv~gg~~gve~~~~~~e~a~~~~~~l~~~g~~~~v~v~~~~~~~~l~~~~~~~~~~~~~~l~~~l~~~GV~~~~~~~  222 (430)
T 3hyw_A          143 PGPVVIGAIPGVSCFGPAYEFALMLHYELKKRGIRYKVPMTFITSEPYLGHFGVGGIGASKRLVEDLFAERNIDWIANVA  222 (430)
T ss_dssp             CCCEEEEECTTCCCCHHHHHHHHHHHHHHHHTTCGGGCCEEEECSSSSTTCTTTTCSTTHHHHHHHHHHHTTCEEECSCE
T ss_pred             CceEEEeCCCcEEEhHHHHHHHHHHHHHHHHhcccccceeeeecccchhhhccchhhHHHHHHHHHHHHhCCeEEEeCce
Confidence            5566666542      233443    34455543    232                     356778899999999999


Q ss_pred             EEEEEeCCCCcEEEEEcCCC--CEEeCCEEEEccCCccCCchhhhcCC--ccc-CCCEEeCCCCC-CCCCceEEeccccc
Q 012165          253 IKNLEAGSDGRVAAVKLEDG--STIDADTIVIGIGAKPTVSPFERVGL--NSS-VGGIQVDGQFR-TRMPGIFAIGDVAA  326 (469)
Q Consensus       253 v~~i~~~~~~~v~~v~~~~g--~~i~~D~vi~a~G~~p~~~~~~~~gl--~~~-~g~i~Vd~~~~-t~~~~Vfa~GD~a~  326 (469)
                      |++++.  + .+ .+...+|  +++++|++++++|.+|+ +++..+++  ..+ ++.|.||++|| |++|||||+|||+.
T Consensus       223 v~~v~~--~-~~-~~~~~~g~~~~i~~d~vi~~~G~~~~-~~~~~~~~~l~~~~~g~i~vd~~lq~t~~~~IfAiGD~a~  297 (430)
T 3hyw_A          223 VKAIEP--D-KV-IYEDLNGNTHEVPAKFTMFMPSFQGP-EVVASAGDKVANPANKMVIVNRCFQNPTYKNIFGVGVVTA  297 (430)
T ss_dssp             EEEECS--S-EE-EEECTTSCEEEEECSEEEEECEEECC-HHHHTTCTTTBCTTTCCBCCCTTSBCSSSTTEEECSTTBC
T ss_pred             EEEEeC--C-ce-EEEeeCCCceEeecceEEEeccCCCc-hHHHhcccccccCCceEEEecccccCCCCCCEEEeccEEe
Confidence            999973  2 22 2333443  57999999999999998 66666653  334 35689999999 79999999999998


Q ss_pred             cCCccCCc--ccccchHHHHHHHHHHHHHHHhc
Q 012165          327 FPLKMYDR--TARVEHVDHARQSAQHCIKALLS  357 (469)
Q Consensus       327 ~~~~~~~~--~~~~~~~~~A~~~a~~~a~~i~~  357 (469)
                      .|......  .......+.|.+||+.+|+||+.
T Consensus       298 ~p~~~~~~~~~~~pk~a~~A~~qg~~~A~Ni~~  330 (430)
T 3hyw_A          298 IPPIEKTPIPTGVPKTGMMIEQMAMAVAHNIVN  330 (430)
T ss_dssp             CCCSSCCSSCCCCCCCHHHHHHHHHHHHHHHHH
T ss_pred             cCCcccCcCcCccchHHHHHHHHHHHHHHHHHH
Confidence            76432111  01123456799999999999975

>2q7v_A Thioredoxin reductase; rossman fold, FAD, flavoprotein, oxidoreductase, redox- active center; HET: FAD; 1.90A {Deinococcus radiodurans}

Probab=100.00  E-value=1.7e-34  Score=280.51  Aligned_cols=275  Identities=21%  Similarity=0.260  Sum_probs=199.7

Q ss_pred             CCCcEEEEcCcHHHHHHHHHHHHcCCCCCcEEEEcCCCCCCCCCCCCcccccCCCCCCCCCCCCCcc-ccCCCCCCCCHh
Q 012165           50 ENREFVIVGGGNAAGYAARTFVEHGMADGRLCIVSKEAYAPYERPALTKGYLFPLDKKPARLPGFHT-CVGSGGERQTPE  128 (469)
Q Consensus        50 ~~~~vvIIGgG~AGl~aA~~L~~~g~~~~~V~vie~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~  128 (469)
                      .++||+|||||+||+++|..|++.|+   +|+|+|+.. .+.. .....        ....++++.. ...........+
T Consensus         7 ~~~dvvIIG~G~aGl~aA~~l~~~g~---~v~lie~~~-~gg~-~~~~~--------~~~~~~~~~~~~~~~~~~~~l~~   73 (325)
T 2q7v_A            7 HDYDVVIIGGGPAGLTAAIYTGRAQL---STLILEKGM-PGGQ-IAWSE--------EVENFPGFPEPIAGMELAQRMHQ   73 (325)
T ss_dssp             EEEEEEEECCSHHHHHHHHHHHHTTC---CEEEEESSC-TTGG-GGGCS--------CBCCSTTCSSCBCHHHHHHHHHH
T ss_pred             ccCCEEEECCCHHHHHHHHHHHHcCC---cEEEEeCCC-CCcc-ccccc--------ccccCCCCCCCCCHHHHHHHHHH
Confidence            45899999999999999999999987   799999983 2111 00000        0001111100 000001112344


Q ss_pred             HHHHCCcEEEeCCcEEEEeCC--C---cEEEeCCCeEEEeccEEeccCCCCCcCCCCCCCCc---CcEEEecCHHHHHHH
Q 012165          129 WYKEKGIEMIYQDPVTSIDIE--K---QTLITNSGKLLKYGSLIVATGCTASRFPEKIGGYL---PGVHYIRDVADADAL  200 (469)
Q Consensus       129 ~~~~~~i~~~~~~~v~~id~~--~---~~v~~~~g~~~~yd~lVlAtG~~~~~~~~~~g~~~---~~v~~~~~~~~~~~~  200 (469)
                      .+++.+++++. .+|..++..  +   .+|.+.+|+++.||+||+|||+.|. .|.+++.+.   +++++..      ..
T Consensus        74 ~~~~~gv~~~~-~~v~~i~~~~~~~~~~~v~~~~g~~~~~~~vv~AtG~~~~-~~~i~g~~~~~~~~~~~~~------~~  145 (325)
T 2q7v_A           74 QAEKFGAKVEM-DEVQGVQHDATSHPYPFTVRGYNGEYRAKAVILATGADPR-KLGIPGEDNFWGKGVSTCA------TC  145 (325)
T ss_dssp             HHHHTTCEEEE-CCEEEEEECTTSSSCCEEEEESSCEEEEEEEEECCCEEEC-CCCCTTTTTTBTTTEESCH------HH
T ss_pred             HHHHcCCEEEe-eeEEEEEeccCCCceEEEEECCCCEEEeCEEEECcCCCcC-CCCCCChhhccCceEEEec------cC
Confidence            56778999988 589999876  3   4677788888999999999999886 455566431   3444332      11


Q ss_pred             HHhhhcCCeEEEEcCChHHHHHHHHHHhCCCeEe------------eeHHHH-HHcCcEEEcCCeEEEEEeCCCCcEEEE
Q 012165          201 ISSLEKAKKVVVVGGGYIGMEVAAAAVGWKLDTT------------RYEQLY-QQNGVKFVKGASIKNLEAGSDGRVAAV  267 (469)
Q Consensus       201 ~~~~~~~~~vvVvG~G~~g~e~A~~l~~~g~~v~------------~~~~~l-~~~gV~~~~~~~v~~i~~~~~~~v~~v  267 (469)
                      ......+++++|||+|.+|+|+|..|.+++.+++            .+.+.+ ++.||+++++++++++..  ++.+..|
T Consensus       146 ~~~~~~~~~v~VvG~G~~g~e~A~~l~~~g~~Vtlv~~~~~~~~~~~~~~~l~~~~gv~i~~~~~v~~i~~--~~~v~~v  223 (325)
T 2q7v_A          146 DGFFYKGKKVVVIGGGDAAVEEGMFLTKFADEVTVIHRRDTLRANKVAQARAFANPKMKFIWDTAVEEIQG--ADSVSGV  223 (325)
T ss_dssp             HGGGGTTCEEEEECCSHHHHHHHHHHTTTCSEEEEECSSSSCCSCHHHHHHHHTCTTEEEECSEEEEEEEE--SSSEEEE
T ss_pred             CHHHcCCCEEEEECCCHHHHHHHHHHHhcCCEEEEEeCCCcCCcchHHHHHHHhcCCceEecCCceEEEcc--CCcEEEE
Confidence            2234568999999999999999999999999987            122334 446999999999999985  3455566


Q ss_pred             EcC---CCC--EEeCCEEEEccCCccCCchhhhcCCccc-CCCEEeCCCCCCCCCceEEeccccccCCccCCcccccchH
Q 012165          268 KLE---DGS--TIDADTIVIGIGAKPTVSPFERVGLNSS-VGGIQVDGQFRTRMPGIFAIGDVAAFPLKMYDRTARVEHV  341 (469)
Q Consensus       268 ~~~---~g~--~i~~D~vi~a~G~~p~~~~~~~~gl~~~-~g~i~Vd~~~~t~~~~Vfa~GD~a~~~~~~~~~~~~~~~~  341 (469)
                      .+.   +|+  ++++|.||+++|++||+++++++ +..+ +|+|.||++++|++|+|||+|||+..+.         ..+
T Consensus       224 ~~~~~~~g~~~~i~~D~vi~a~G~~p~~~~l~~~-~~~~~~g~i~vd~~~~t~~~~vya~GD~~~~~~---------~~~  293 (325)
T 2q7v_A          224 KLRNLKTGEVSELATDGVFIFIGHVPNTAFVKDT-VSLRDDGYVDVRDEIYTNIPMLFAAGDVSDYIY---------RQL  293 (325)
T ss_dssp             EEEETTTCCEEEEECSEEEECSCEEESCGGGTTT-SCBCTTSCBCCBTTTBCSSTTEEECSTTTCSSC---------CCH
T ss_pred             EEEECCCCcEEEEEcCEEEEccCCCCChHHHhhh-cccCCCccEecCCCCccCCCCEEEeecccCccH---------HHH
Confidence            665   675  79999999999999999998876 6654 6789999999999999999999998631         145


Q ss_pred             HHHHHHHHHHHHHHhc
Q 012165          342 DHARQSAQHCIKALLS  357 (469)
Q Consensus       342 ~~A~~~a~~~a~~i~~  357 (469)
                      ..|..+|+.+|.+|..
T Consensus       294 ~~A~~~g~~aa~~i~~  309 (325)
T 2q7v_A          294 ATSVGAGTRAAMMTER  309 (325)
T ss_dssp             HHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHH
Confidence            6788999999998864

>3vrd_B FCCB subunit, flavocytochrome C flavin subunit; sulfide oxidation, heme C binding, FAD binding, electron TRA oxidoreductase complex; HET: HEC FAD; 1.50A {Thermochromatium tepidum} PDB: 1fcd_A*

Probab=100.00  E-value=9.7e-35  Score=290.52  Aligned_cols=278  Identities=19%  Similarity=0.199  Sum_probs=204.0

Q ss_pred             CCcEEEEcCcHHHHHHHHHHHHcCCCCCcEEEEcCCCCCCCCCCCCcccccCCCCCCCCCCCCCccccCCCCCCCCHhHH
Q 012165           51 NREFVIVGGGNAAGYAARTFVEHGMADGRLCIVSKEAYAPYERPALTKGYLFPLDKKPARLPGFHTCVGSGGERQTPEWY  130 (469)
Q Consensus        51 ~~~vvIIGgG~AGl~aA~~L~~~g~~~~~V~vie~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  130 (469)
                      .|+|||||||+||+++|.+|++.+. +.+|+|||+++++.|. |.+.. +.... .....+            ....+.+
T Consensus         2 GKkVvIIG~G~AG~~aA~~L~~~~~-~~~Vtlie~~~~~~~~-p~~~~-v~~g~-~~~~~~------------~~~~~~~   65 (401)
T 3vrd_B            2 GRKVVVVGGGTGGATAAKYIKLADP-SIEVTLIEPNETYYTC-YMSNE-VIGGD-RELASL------------RVGYDGL   65 (401)
T ss_dssp             CCEEEEECCSHHHHHHHHHHHHHCT-TSEEEEECSCSSEECS-TTHHH-HHHTS-SCGGGG------------EECSHHH
T ss_pred             cCEEEEECCcHHHHHHHHHHHhcCc-CCeEEEEeCCCCCCCc-cCHHH-HhcCC-CCHHHH------------hhCHHHH
Confidence            4789999999999999999999886 7799999998876443 44332 22211 111111            2344567


Q ss_pred             HHCCcEEEeCCcEEEEeCCCcEEEeCCCeEEEeccEEeccCCCCCcCCCCCCCC----cCcEEEecCHHHHHHHHHhhh-
Q 012165          131 KEKGIEMIYQDPVTSIDIEKQTLITNSGKLLKYGSLIVATGCTASRFPEKIGGY----LPGVHYIRDVADADALISSLE-  205 (469)
Q Consensus       131 ~~~~i~~~~~~~v~~id~~~~~v~~~~g~~~~yd~lVlAtG~~~~~~~~~~g~~----~~~v~~~~~~~~~~~~~~~~~-  205 (469)
                      .+.+++++.+ +|+.||++++++++.+|.++.||+||||||+++. .+.++|..    ...++.+.+..+...+.+.+. 
T Consensus        66 ~~~gv~~i~~-~v~~id~~~~~v~~~~g~~i~yd~LviAtG~~~~-~~~i~G~~e~~~~~~~~~~~~~~~~~~~~~~l~~  143 (401)
T 3vrd_B           66 RAHGIQVVHD-SALGIDPDKKLVKTAGGAEFAYDRCVVAPGIDLL-YDKIEGYSEALAAKLPHAWKAGEQTALLRRQLES  143 (401)
T ss_dssp             HHTTCEEECS-CEEEEETTTTEEEETTSCEEECSEEEECCCEEEC-GGGSBTCCSGGGGTSCCCSSCSHHHHHHHHHHHH
T ss_pred             HHCCCEEEEe-EEEEEEccCcEEEecccceeecceeeeccCCccc-cCCccCchhhcccCccceeccHHHHHHHHHHHHh
Confidence            7889999885 8999999999999999999999999999999886 45556643    123445556666666655443 


Q ss_pred             --cCCeEEEEcCC------h----HHHHHHHHHHhCC--CeEe--------------------eeHHHHHHcCcEEEcCC
Q 012165          206 --KAKKVVVVGGG------Y----IGMEVAAAAVGWK--LDTT--------------------RYEQLYQQNGVKFVKGA  251 (469)
Q Consensus       206 --~~~~vvVvG~G------~----~g~e~A~~l~~~g--~~v~--------------------~~~~~l~~~gV~~~~~~  251 (469)
                        .+..+++.+++      .    .+++++..+.+.+  .+++                    .+.+.+++.||++++++
T Consensus       144 ~~~~~~~v~~~~~~~i~~~~a~~e~~~~~a~~~~~~~~~~~v~i~~~~~~~~~~~~~~~~~~~~~~~~l~~~gi~v~~~~  223 (401)
T 3vrd_B          144 MDDGGVVIIAPPAPPFRCPPGPYERASQIAHYLKAHKSKSKVIILDNSQTFSKQAQFTKGWERLYGFGTENALIEWHPGP  223 (401)
T ss_dssp             SCTTCEEEEECCSSSCBCTTHHHHHHHHHHHHHHHHCTTCEEEEECSSSSCTTHHHHHHHHHHHSCTTSTTCSEEEECTT
T ss_pred             cccCCcEEEecCCccEEeehHHHHHHHHHHHHHHhcCCCCEEEEEcccccccccccccHHHHHHHHHHHHhcCcEEEeCc
Confidence              34444444321      1    3456666666655  3444                    22334567899999999


Q ss_pred             eEEEEEeCCCCcEEEEEcCCCCEEeCCEEEEccCCccCCchhhhcCCcccCCCEEeCCC-CC-CCCCceEEecccccc-C
Q 012165          252 SIKNLEAGSDGRVAAVKLEDGSTIDADTIVIGIGAKPTVSPFERVGLNSSVGGIQVDGQ-FR-TRMPGIFAIGDVAAF-P  328 (469)
Q Consensus       252 ~v~~i~~~~~~~v~~v~~~~g~~i~~D~vi~a~G~~p~~~~~~~~gl~~~~g~i~Vd~~-~~-t~~~~Vfa~GD~a~~-~  328 (469)
                      ++..++.+.++.  .+.+++|+++++|++++++|.+|+ .+++++++..++|+|.||++ +| |++|||||+|||+.. +
T Consensus       224 ~v~~v~~~~~~~--~v~~~~g~~i~~D~vi~~~g~~~~-~~~~~~gl~~~~G~i~VD~~tl~~t~~p~VfAiGDva~~~~  300 (401)
T 3vrd_B          224 DAAVVKTDTEAM--TVETSFGETFKAAVINLIPPQRAG-KIAQSASLTNDSGWCPVDIRTFESSLQPGIHVIGDACNAAP  300 (401)
T ss_dssp             TTCEEEEETTTT--EEEETTSCEEECSEEEECCCEEEC-HHHHHTTCCCTTSSBCBCTTTCBBSSSTTEEECGGGBCCTT
T ss_pred             eEEEEEecccce--EEEcCCCcEEEeeEEEEecCcCCc-hhHhhccccccCCCEEECCCcceecCCCCEEEecccccCCC
Confidence            999988654443  578899999999999999999998 78899999877889999986 65 689999999999864 2


Q ss_pred             CccCCcccccchHHHHHHHHHHHHHHHhc
Q 012165          329 LKMYDRTARVEHVDHARQSAQHCIKALLS  357 (469)
Q Consensus       329 ~~~~~~~~~~~~~~~A~~~a~~~a~~i~~  357 (469)
                      .+        .....|..||+.+|+||+.
T Consensus       301 ~p--------k~a~~A~~qa~v~A~ni~~  321 (401)
T 3vrd_B          301 MP--------KSAYSANSQAKVAAAAVVA  321 (401)
T ss_dssp             SC--------BSHHHHHHHHHHHHHHHHH
T ss_pred             CC--------chHHHHHHHHHHHHHHHHH
Confidence            22        2455689999999999864

>4fk1_A Putative thioredoxin reductase; structural genomics, niaid, national institute of allergy AN infectious diseases; HET: MSE FAD; 2.40A {Bacillus anthracis} PDB: 4fk1_C*

Probab=100.00  E-value=2.2e-35  Score=284.08  Aligned_cols=272  Identities=14%  Similarity=0.122  Sum_probs=190.6

Q ss_pred             CCCCCcEEEEcCcHHHHHHHHHHHHcCCCCCcEEEEcCCCCCCCCCCCCcccccCCCCCCCCCCCCCccc---cCCCCCC
Q 012165           48 ANENREFVIVGGGNAAGYAARTFVEHGMADGRLCIVSKEAYAPYERPALTKGYLFPLDKKPARLPGFHTC---VGSGGER  124 (469)
Q Consensus        48 ~~~~~~vvIIGgG~AGl~aA~~L~~~g~~~~~V~vie~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~---~~~~~~~  124 (469)
                      .|+++||+||||||||++||.+|++.|+   +|+|+|++...+    .+..           +++++...   ...+...
T Consensus         3 ~M~~yDVvIIGaGpAGlsAA~~lar~g~---~v~lie~~~~gg----~~~~-----------~~~~~~~~~~~~~~~~~~   64 (304)
T 4fk1_A            3 AMKYIDCAVIGAGPAGLNASLVLGRARK---QIALFDNNTNRN----RVTQ-----------NSHGFITRDGIKPEEFKE   64 (304)
T ss_dssp             ---CEEEEEECCSHHHHHHHHHHHHTTC---CEEEEECSCCGG----GGSS-----------CBCCSTTCTTBCHHHHHH
T ss_pred             CCCCcCEEEECCCHHHHHHHHHHHHCCC---CEEEEeCCCCCC----eeee-----------ecCCccCCCCCCHHHHHH
Confidence            4667999999999999999999999987   799999874321    0000           01111000   0000000


Q ss_pred             CCHhHHHHC-CcEEEeCCcEEEEeCC---CcEEEeCCCeEEEeccEEeccCCCCCcCCCCCCCCc---CcEEEecCHHHH
Q 012165          125 QTPEWYKEK-GIEMIYQDPVTSIDIE---KQTLITNSGKLLKYGSLIVATGCTASRFPEKIGGYL---PGVHYIRDVADA  197 (469)
Q Consensus       125 ~~~~~~~~~-~i~~~~~~~v~~id~~---~~~v~~~~g~~~~yd~lVlAtG~~~~~~~~~~g~~~---~~v~~~~~~~~~  197 (469)
                      ...+.+.++ ++.+.. ..+..++..   .+++.+.+|+++.||+||||||++|+ .|+++|.+.   .++++.      
T Consensus        65 ~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~v~~~~g~~~~a~~liiATGs~p~-~p~i~G~~~~~~~~v~~~------  136 (304)
T 4fk1_A           65 IGLNEVMKYPSVHYYE-KTVVMITKQSTGLFEIVTKDHTKYLAERVLLATGMQEE-FPSIPNVREYYGKSLFSC------  136 (304)
T ss_dssp             HHHHHHTTSTTEEEEE-CCEEEEEECTTSCEEEEETTCCEEEEEEEEECCCCEEE-CCSCTTHHHHBTTTEESC------
T ss_pred             HHHHHHHhcCCEEEEe-eEEEEeeecCCCcEEEEECCCCEEEeCEEEEccCCccc-cccccCccccccceeeec------
Confidence            111222333 345554 456655432   35788999999999999999999987 566666321   233332      


Q ss_pred             HHHHHhhhcCCeEEEEcCCh-HHHHHHHHHHhCCCeEe----------eeHHHHHHcCcEEEcCCeEEEEEeCCCCcEEE
Q 012165          198 DALISSLEKAKKVVVVGGGY-IGMEVAAAAVGWKLDTT----------RYEQLYQQNGVKFVKGASIKNLEAGSDGRVAA  266 (469)
Q Consensus       198 ~~~~~~~~~~~~vvVvG~G~-~g~e~A~~l~~~g~~v~----------~~~~~l~~~gV~~~~~~~v~~i~~~~~~~v~~  266 (469)
                      .........+++++|||||. .++|+|..+...+.+++          .+.+.+++.|++++.+. +..+.. +++.+..
T Consensus       137 ~~~~~~~~~~~~~~VIggG~~~~~e~a~~~~~~~~~v~i~~~~~~~~~~~~~~l~~~g~~~~~~~-v~~~~~-~~~~~~~  214 (304)
T 4fk1_A          137 PYCDGWELKDQPLIIISENEDHTLHMTKLVYNWSTDLVIATNGNELSQTIMDELSNKNIPVITES-IRTLQG-EGGYLKK  214 (304)
T ss_dssp             HHHHSGGGTTSCEEEECCSHHHHHHHHHHHTTTCSCEEEECSSCCCCHHHHHHHHTTTCCEECSC-EEEEES-GGGCCCE
T ss_pred             cccchhHhcCCceeeecCCCchhhhHHHHHHhCCceEEEEeccccchhhhhhhhhccceeEeeee-EEEeec-CCCeeee
Confidence            22223344677888888775 56889999999998887          45677889999999874 777763 3566678


Q ss_pred             EEcCCCCEEeCCEEEEccCCccCCchhhhcCCccc-CCCEEeCCCCCCCCCceEEeccccccCCccCCcccccchHHHHH
Q 012165          267 VKLEDGSTIDADTIVIGIGAKPTVSPFERVGLNSS-VGGIQVDGQFRTRMPGIFAIGDVAAFPLKMYDRTARVEHVDHAR  345 (469)
Q Consensus       267 v~~~~g~~i~~D~vi~a~G~~p~~~~~~~~gl~~~-~g~i~Vd~~~~t~~~~Vfa~GD~a~~~~~~~~~~~~~~~~~~A~  345 (469)
                      +++++|+++++|.++++.|.+|++.+++++|++.+ +|+|.||+++|||+|+|||+|||+..+..         .+..|.
T Consensus       215 v~~~~g~~i~~~~~vi~~g~~~~~~~~~~~g~~~~~~G~I~vd~~~~Ts~p~IyA~GDv~~~~~~---------~~~~A~  285 (304)
T 4fk1_A          215 VEFHSGLRIERAGGFIVPTFFRPNQFIEQLGCELQSNGTFVIDDFGRTSEKNIYLAGETTTQGPS---------SLIIAA  285 (304)
T ss_dssp             EEETTSCEECCCEEEECCEEECSSCHHHHTTCCCCTTSSSCSSTTCBCSSTTEEECSHHHHTSCC---------CHHHHH
T ss_pred             eeccccceeeecceeeeeccccCChhhhhcCeEECCCCCEEECcCCccCCCCEEEEeccCCCcch---------HHHHHH
Confidence            99999999999999999888888889999999876 56799999999999999999999975432         344578


Q ss_pred             HHHHHHHHHHh
Q 012165          346 QSAQHCIKALL  356 (469)
Q Consensus       346 ~~a~~~a~~i~  356 (469)
                      .+|+.||..|.
T Consensus       286 ~~G~~AA~~i~  296 (304)
T 4fk1_A          286 SQGNKAAIAIN  296 (304)
T ss_dssp             HHHHHHHHHHH
T ss_pred             HHHHHHHHHHH
Confidence            88888887764

>1fl2_A Alkyl hydroperoxide reductase subunit F; reactive oxygen, FAD, disulphi oxidoreductase, oxidoreductase; HET: FAD; 1.90A {Escherichia coli} SCOP: c.3.1.5 c.3.1.5

Probab=100.00  E-value=9.4e-35  Score=280.24  Aligned_cols=274  Identities=23%  Similarity=0.307  Sum_probs=199.0

Q ss_pred             CCcEEEEcCcHHHHHHHHHHHHcCCCCCcEEEEcCCCCCCCC-CCCCcccccCCCCCCCCCCCCCccccCCCCCCCCHhH
Q 012165           51 NREFVIVGGGNAAGYAARTFVEHGMADGRLCIVSKEAYAPYE-RPALTKGYLFPLDKKPARLPGFHTCVGSGGERQTPEW  129 (469)
Q Consensus        51 ~~~vvIIGgG~AGl~aA~~L~~~g~~~~~V~vie~~~~~~~~-~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  129 (469)
                      ++||+|||||+||+++|..|++.|+   +|+|||+.....+. .+.+.            .++...............++
T Consensus         1 ~~dvvIIG~G~aGl~aA~~l~~~g~---~v~li~~~~gG~~~~~~~~~------------~~~~~~~~~~~~~~~~~~~~   65 (310)
T 1fl2_A            1 AYDVLIVGSGPAGAAAAIYSARKGI---RTGLMGERFGGQILDTVDIE------------NYISVPKTEGQKLAGALKVH   65 (310)
T ss_dssp             CEEEEEECCSHHHHHHHHHHHTTTC---CEEEECSSTTGGGGGCCEEC------------CBTTBSSEEHHHHHHHHHHH
T ss_pred             CCCEEEECcCHHHHHHHHHHHHCCC---cEEEEeCCCCceeccccccc------------cccCcCCCCHHHHHHHHHHH
Confidence            3699999999999999999999987   79999764210000 00000            00000000000001123345


Q ss_pred             HHHCCcEEEeCCcEEEEeCC-----CcEEEeCCCeEEEeccEEeccCCCCCcCCCCCCCC---cCcEEEecCHHHHHHHH
Q 012165          130 YKEKGIEMIYQDPVTSIDIE-----KQTLITNSGKLLKYGSLIVATGCTASRFPEKIGGY---LPGVHYIRDVADADALI  201 (469)
Q Consensus       130 ~~~~~i~~~~~~~v~~id~~-----~~~v~~~~g~~~~yd~lVlAtG~~~~~~~~~~g~~---~~~v~~~~~~~~~~~~~  201 (469)
                      +++.+++++.+++|..++++     ...|.+++|+++.||+||+|||+.|. .|.++|.+   .+++++.      ..+.
T Consensus        66 ~~~~~v~~~~~~~v~~i~~~~~~~~~~~v~~~~g~~~~~~~lv~AtG~~~~-~~~~~g~~~~~~~~~~~~------~~~~  138 (310)
T 1fl2_A           66 VDEYDVDVIDSQSASKLIPAAVEGGLHQIETASGAVLKARSIIVATGAKWR-NMNVPGEDQYRTKGVTYC------PHCD  138 (310)
T ss_dssp             HHTSCEEEECSCCEEEEECCSSTTCCEEEEETTSCEEEEEEEEECCCEEEC-CCCCTTTTTTBTTTEESC------HHHH
T ss_pred             HHHcCCeEEccCEEEEEEecccCCceEEEEECCCCEEEeCEEEECcCCCcC-CCCCCChhhcccceeEEe------ccCc
Confidence            66789999998899999865     35788888888999999999999876 45555542   1334332      1223


Q ss_pred             HhhhcCCeEEEEcCChHHHHHHHHHHhCCCeEe------------eeHHHHHH-cCcEEEcCCeEEEEEeCCCCcEEEEE
Q 012165          202 SSLEKAKKVVVVGGGYIGMEVAAAAVGWKLDTT------------RYEQLYQQ-NGVKFVKGASIKNLEAGSDGRVAAVK  268 (469)
Q Consensus       202 ~~~~~~~~vvVvG~G~~g~e~A~~l~~~g~~v~------------~~~~~l~~-~gV~~~~~~~v~~i~~~~~~~v~~v~  268 (469)
                      .....+++++|||+|.+|+|+|..|++.+.+++            .+.+.+++ .||+++++++++++..+ ++++..+.
T Consensus       139 ~~~~~~~~v~VvG~G~~g~e~A~~l~~~g~~Vtlv~~~~~~~~~~~~~~~l~~~~gv~v~~~~~v~~i~~~-~~~v~~v~  217 (310)
T 1fl2_A          139 GPLFKGKRVAVIGGGNSGVEAAIDLAGIVEHVTLLEFAPEMKADQVLQDKLRSLKNVDIILNAQTTEVKGD-GSKVVGLE  217 (310)
T ss_dssp             GGGGBTCEEEEECCSHHHHHHHHHHHTTBSEEEEECSSSSCCSCHHHHHHHHTCTTEEEESSEEEEEEEES-SSSEEEEE
T ss_pred             HhhcCCCEEEEECCCHHHHHHHHHHHHhCCEEEEEEeCcccCccHHHHHHHhhCCCeEEecCCceEEEEcC-CCcEEEEE
Confidence            345578999999999999999999999999887            23455666 69999999999999854 45555666


Q ss_pred             cCC---CC--EEeCCEEEEccCCccCCchhhhcCCccc-CCCEEeCCCCCCCCCceEEeccccccCCccCCcccccchHH
Q 012165          269 LED---GS--TIDADTIVIGIGAKPTVSPFERVGLNSS-VGGIQVDGQFRTRMPGIFAIGDVAAFPLKMYDRTARVEHVD  342 (469)
Q Consensus       269 ~~~---g~--~i~~D~vi~a~G~~p~~~~~~~~gl~~~-~g~i~Vd~~~~t~~~~Vfa~GD~a~~~~~~~~~~~~~~~~~  342 (469)
                      +.+   |+  ++++|.||+++|++||++++++. +..+ +|+|.||+++||+.|+|||+|||+..+..         .+.
T Consensus       218 ~~~~~~g~~~~i~~D~vi~a~G~~p~~~~l~~~-l~~~~~g~i~vd~~~~t~~~~vya~GD~~~~~~~---------~~~  287 (310)
T 1fl2_A          218 YRDRVSGDIHNIELAGIFVQIGLLPNTNWLEGA-VERNRMGEIIIDAKCETNVKGVFAAGDCTTVPYK---------QII  287 (310)
T ss_dssp             EEETTTCCEEEEECSEEEECSCEEESCGGGTTT-SCBCTTSCBCCCTTCBCSSTTEEECSTTBSCSSC---------CHH
T ss_pred             EEECCCCcEEEEEcCEEEEeeCCccCchHHhcc-ccccCCCcEEcCCCCccCCCCEEEeecccCCcch---------hhh
Confidence            653   53  68999999999999999888764 6654 57899999999999999999999986532         445


Q ss_pred             HHHHHHHHHHHHHhc
Q 012165          343 HARQSAQHCIKALLS  357 (469)
Q Consensus       343 ~A~~~a~~~a~~i~~  357 (469)
                      .|..+|+.+|.+|..
T Consensus       288 ~A~~~g~~aa~~i~~  302 (310)
T 1fl2_A          288 IATGEGAKASLSAFD  302 (310)
T ss_dssp             HHHHHHHHHHHHHHH
T ss_pred             hhHhhHHHHHHHHHH
Confidence            688888888888863

>2q0l_A TRXR, thioredoxin reductase; bacterial thiredoxin reductase, NADP+ B reduced izoalloxazine bending, oxidoreductase; HET: FAD NAP; 1.45A {Helicobacter pylori} PDB: 2q0k_A* 3ish_A*

Probab=100.00  E-value=3e-34  Score=276.83  Aligned_cols=277  Identities=18%  Similarity=0.222  Sum_probs=200.6

Q ss_pred             CCcEEEEcCcHHHHHHHHHHHHcCCCCCcEEEEcCCCCCCCCCCCCcccccCCCCCCCCCCCCCcc-ccCCCCCCCCHhH
Q 012165           51 NREFVIVGGGNAAGYAARTFVEHGMADGRLCIVSKEAYAPYERPALTKGYLFPLDKKPARLPGFHT-CVGSGGERQTPEW  129 (469)
Q Consensus        51 ~~~vvIIGgG~AGl~aA~~L~~~g~~~~~V~vie~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~  129 (469)
                      ++||+|||||+||+++|..|++.|+ + +|+|+|++.....    +    ...  .....++++.. ...........++
T Consensus         1 ~~dvvIIG~G~aGl~aA~~l~~~g~-~-~v~lie~~~~gg~----~----~~~--~~~~~~~~~~~~~~~~~~~~~l~~~   68 (311)
T 2q0l_A            1 MIDCAIIGGGPAGLSAGLYATRGGV-K-NAVLFEKGMPGGQ----I----TGS--SEIENYPGVKEVVSGLDFMQPWQEQ   68 (311)
T ss_dssp             CEEEEEECCSHHHHHHHHHHHHTTC-S-SEEEECSSSTTCG----G----GGC--SCBCCSTTCCSCBCHHHHHHHHHHH
T ss_pred             CceEEEECccHHHHHHHHHHHHCCC-C-cEEEEcCCCCCcc----c----ccc--cccccCCCCcccCCHHHHHHHHHHH
Confidence            3699999999999999999999876 2 7999998632110    0    000  00001111100 0000001122344


Q ss_pred             HHHCCcEEEeCCcEEEEeCCCc--EEEeCCCeEEEeccEEeccCCCCCcCCCCCCCCc---CcEEEecCHHHHHHHHHhh
Q 012165          130 YKEKGIEMIYQDPVTSIDIEKQ--TLITNSGKLLKYGSLIVATGCTASRFPEKIGGYL---PGVHYIRDVADADALISSL  204 (469)
Q Consensus       130 ~~~~~i~~~~~~~v~~id~~~~--~v~~~~g~~~~yd~lVlAtG~~~~~~~~~~g~~~---~~v~~~~~~~~~~~~~~~~  204 (469)
                      +++.+++++. .+|..++.+..  +|.+.+++++.||+||+|||+.|+ .|.++|...   ++++++..      .....
T Consensus        69 ~~~~~v~~~~-~~v~~i~~~~~~~~v~~~~g~~~~~~~vv~AtG~~~~-~~~~~g~~~~~~~~~~~~~~------~~~~~  140 (311)
T 2q0l_A           69 CFRFGLKHEM-TAVQRVSKKDSHFVILAEDGKTFEAKSVIIATGGSPK-RTGIKGESEYWGKGVSTCAT------CDGFF  140 (311)
T ss_dssp             HHTTSCEEEC-SCEEEEEEETTEEEEEETTSCEEEEEEEEECCCEEEC-CCCCBTHHHHBTTTEESCHH------HHGGG
T ss_pred             HHHcCCEEEE-EEEEEEEEcCCEEEEEEcCCCEEECCEEEECCCCCCC-CCCCCChhhccCCcEEEeec------CChhh
Confidence            5677999988 68999987766  677788888999999999999886 455555321   34444321      12234


Q ss_pred             hcCCeEEEEcCChHHHHHHHHHHhCCCeEe------------eeHHHHH-HcCcEEEcCCeEEEEEeCCCCcEEEEEcC-
Q 012165          205 EKAKKVVVVGGGYIGMEVAAAAVGWKLDTT------------RYEQLYQ-QNGVKFVKGASIKNLEAGSDGRVAAVKLE-  270 (469)
Q Consensus       205 ~~~~~vvVvG~G~~g~e~A~~l~~~g~~v~------------~~~~~l~-~~gV~~~~~~~v~~i~~~~~~~v~~v~~~-  270 (469)
                      ..+++++|||+|.+|+|+|..|.+++.+++            .+.+.+. +.||++++++.++++..+ ++.+..+.+. 
T Consensus       141 ~~~~~v~VvG~G~~g~e~A~~l~~~g~~Vtlv~~~~~~~~~~~~~~~l~~~~gv~v~~~~~v~~i~~~-~~~v~~v~~~~  219 (311)
T 2q0l_A          141 YKNKEVAVLGGGDTAVEEAIYLANICKKVYLIHRRDGFRCAPITLEHAKNNDKIEFLTPYVVEEIKGD-ASGVSSLSIKN  219 (311)
T ss_dssp             GTTSEEEEECCSHHHHHHHHHHHTTSSEEEEECSSSSCCSCHHHHHHHHTCTTEEEETTEEEEEEEEE-TTEEEEEEEEE
T ss_pred             cCCCEEEEECCCHHHHHHHHHHHhcCCEEEEEeeCCccCCCHHHHHHHhhCCCeEEEeCCEEEEEECC-CCcEeEEEEEe
Confidence            568999999999999999999999999987            2234444 479999999999999854 3445456665 


Q ss_pred             --CCC--EEeCCEEEEccCCccCCchhhhcC----Cccc-CCCEEeCCCCCCCCCceEEeccccccCCccCCcccccchH
Q 012165          271 --DGS--TIDADTIVIGIGAKPTVSPFERVG----LNSS-VGGIQVDGQFRTRMPGIFAIGDVAAFPLKMYDRTARVEHV  341 (469)
Q Consensus       271 --~g~--~i~~D~vi~a~G~~p~~~~~~~~g----l~~~-~g~i~Vd~~~~t~~~~Vfa~GD~a~~~~~~~~~~~~~~~~  341 (469)
                        +|+  ++++|.||+++|++|++++++..+    +..+ +|+|.||+++||++|+|||+|||+..+.         ..+
T Consensus       220 ~~~g~~~~i~~D~vi~a~G~~p~~~~l~~~g~~~~l~~~~~g~i~vd~~~~t~~~~vya~GD~~~~~~---------~~~  290 (311)
T 2q0l_A          220 TATNEKRELVVPGFFIFVGYDVNNAVLKQEDNSMLCKCDEYGSIVVDFSMKTNVQGLFAAGDIRIFAP---------KQV  290 (311)
T ss_dssp             TTTCCEEEEECSEEEECSCEEECCGGGBCTTSCBSSCBCTTSCBCCCTTCBCSSTTEEECSTTBTTCC---------CCH
T ss_pred             cCCCceEEEecCEEEEEecCccChhhhhcccccceeEeccCCCEEeCCccccCCCCeEEcccccCcch---------HHH
Confidence              675  799999999999999999988775    7665 5889999999999999999999998631         156


Q ss_pred             HHHHHHHHHHHHHHhc
Q 012165          342 DHARQSAQHCIKALLS  357 (469)
Q Consensus       342 ~~A~~~a~~~a~~i~~  357 (469)
                      ..|..+|+.+|.+|..
T Consensus       291 ~~A~~~g~~aa~~i~~  306 (311)
T 2q0l_A          291 VCAASDGATAALSVIS  306 (311)
T ss_dssp             HHHHHHHHHHHHHHHH
T ss_pred             HHHHHhHHHHHHHHHH
Confidence            6799999999999863

>3r9u_A Thioredoxin reductase; structural genomics, center for structural genomics of infec diseases, csgid, thioredoxin-disulfide reductase, FAD; HET: FAD; 2.36A {Campylobacter jejuni}

Probab=100.00  E-value=2.7e-34  Score=277.36  Aligned_cols=276  Identities=21%  Similarity=0.209  Sum_probs=197.9

Q ss_pred             CCCcEEEEcCcHHHHHHHHHHHHcCCCCCcEEE-EcCCCCCCCCCCCCcccccCCCCCCCCCCCCCc-cccCCCCCCCCH
Q 012165           50 ENREFVIVGGGNAAGYAARTFVEHGMADGRLCI-VSKEAYAPYERPALTKGYLFPLDKKPARLPGFH-TCVGSGGERQTP  127 (469)
Q Consensus        50 ~~~~vvIIGgG~AGl~aA~~L~~~g~~~~~V~v-ie~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~  127 (469)
                      .++||+|||||+||+++|..|++.|+   +|+| +|+.. ++..       +...  .....+|++. ............
T Consensus         3 ~~~~vvIIG~G~aGl~aA~~l~~~g~---~v~li~e~~~-~gG~-------~~~~--~~~~~~~~~~~~~~~~~~~~~~~   69 (315)
T 3r9u_A            3 AMLDVAIIGGGPAGLSAGLYATRGGL---KNVVMFEKGM-PGGQ-------ITSS--SEIENYPGVAQVMDGISFMAPWS   69 (315)
T ss_dssp             SCEEEEEECCSHHHHHHHHHHHHHTC---SCEEEECSSS-TTGG-------GGGC--SCBCCSTTCCSCBCHHHHHHHHH
T ss_pred             CCceEEEECCCHHHHHHHHHHHHCCC---CeEEEEeCCC-CCce-------eeee--ceeccCCCCCCCCCHHHHHHHHH
Confidence            46899999999999999999999987   6888 99843 2110       0000  0001111111 000000112234


Q ss_pred             hHHHHCCcEEEeCCcEEEEeCCC----cEEEeCCCeEEEeccEEeccCCCCCcCCCCCCCCc---CcEEEecCHHHHHHH
Q 012165          128 EWYKEKGIEMIYQDPVTSIDIEK----QTLITNSGKLLKYGSLIVATGCTASRFPEKIGGYL---PGVHYIRDVADADAL  200 (469)
Q Consensus       128 ~~~~~~~i~~~~~~~v~~id~~~----~~v~~~~g~~~~yd~lVlAtG~~~~~~~~~~g~~~---~~v~~~~~~~~~~~~  200 (469)
                      +++++.+++++.+ +|..+ .+.    ..+.+..+.++.||+||+|||+.|. .|.++|...   +++++.      ...
T Consensus        70 ~~~~~~~v~~~~~-~v~~i-~~~~~~~~~v~~~~~~~~~~d~lvlAtG~~~~-~~~~~g~~~~~~~~~~~~------~~~  140 (315)
T 3r9u_A           70 EQCMRFGLKHEMV-GVEQI-LKNSDGSFTIKLEGGKTELAKAVIVCTGSAPK-KAGFKGEDEFFGKGVSTC------ATC  140 (315)
T ss_dssp             HHHTTTCCEEECC-CEEEE-EECTTSCEEEEETTSCEEEEEEEEECCCEEEC-CCCCBTTTTTBTTTEESC------HHH
T ss_pred             HHHHHcCcEEEEE-EEEEE-ecCCCCcEEEEEecCCEEEeCEEEEeeCCCCC-CCCCCChhhcCCCeEEee------ecc
Confidence            4556789999987 89888 443    3421433338999999999999876 565666543   444433      222


Q ss_pred             HHhhhcCCeEEEEcCChHHHHHHHHHHhCCCeEe-------------eeHHHHHHcCcEEEcCCeEEEEEeCCCCcEEEE
Q 012165          201 ISSLEKAKKVVVVGGGYIGMEVAAAAVGWKLDTT-------------RYEQLYQQNGVKFVKGASIKNLEAGSDGRVAAV  267 (469)
Q Consensus       201 ~~~~~~~~~vvVvG~G~~g~e~A~~l~~~g~~v~-------------~~~~~l~~~gV~~~~~~~v~~i~~~~~~~v~~v  267 (469)
                      ......+++++|||+|.+|+|+|..|.+++.+++             .+.+.+++.||++++++.+.+++.+ ++.+..+
T Consensus       141 ~~~~~~~~~v~viG~g~~~~e~a~~l~~~g~~v~~~~~~~~~~~~~~~~~~~~~~~gv~~~~~~~v~~i~~~-~~~~~~v  219 (315)
T 3r9u_A          141 DGFFYKNKEVAVLGGGDTALEEALYLANICSKIYLIHRRDEFRAAPSTVEKVKKNEKIELITSASVDEVYGD-KMGVAGV  219 (315)
T ss_dssp             HGGGGTTSEEEEECCBHHHHHHHHHHHTTSSEEEEECSSSSCBSCHHHHHHHHHCTTEEEECSCEEEEEEEE-TTEEEEE
T ss_pred             cccccCcCEEEEECCCHHHHHHHHHHHhhCCEEEEEEeCCCCCCCHHHHHHHHhcCCeEEEeCcEEEEEEcC-CCcEEEE
Confidence            3334578999999999999999999999999887             2355667899999999999999854 4455566


Q ss_pred             EcC--CCC--EEeCCEEEEccCCccCCchhhh---cC-Cccc-CCCEEeCCCCCCCCCceEEeccccccCCccCCccccc
Q 012165          268 KLE--DGS--TIDADTIVIGIGAKPTVSPFER---VG-LNSS-VGGIQVDGQFRTRMPGIFAIGDVAAFPLKMYDRTARV  338 (469)
Q Consensus       268 ~~~--~g~--~i~~D~vi~a~G~~p~~~~~~~---~g-l~~~-~g~i~Vd~~~~t~~~~Vfa~GD~a~~~~~~~~~~~~~  338 (469)
                      .+.  +|+  ++++|.||+++|.+|++.+++.   +| +..+ +|+|.||+++||+.|+|||+|||+..+.         
T Consensus       220 ~~~~~~g~~~~~~~D~vv~a~G~~p~~~~~~~~~~~g~l~~~~~g~i~vd~~~~t~~~~v~a~GD~~~~~~---------  290 (315)
T 3r9u_A          220 KVKLKDGSIRDLNVPGIFTFVGLNVRNEILKQDDSKFLCNMEEGGQVSVDLKMQTSVAGLFAAGDLRKDAP---------  290 (315)
T ss_dssp             EEECTTSCEEEECCSCEEECSCEEECCGGGBCTTSCBSSCBCTTSCBCCCTTCBCSSTTEEECGGGBTTCC---------
T ss_pred             EEEcCCCCeEEeecCeEEEEEcCCCCchhhhcccccceeeecCCCcEEeCCCcccCCCCEEEeecccCCch---------
Confidence            665  786  7999999999999999988766   54 7765 5889999999999999999999986432         


Q ss_pred             chHHHHHHHHHHHHHHHhc
Q 012165          339 EHVDHARQSAQHCIKALLS  357 (469)
Q Consensus       339 ~~~~~A~~~a~~~a~~i~~  357 (469)
                      ..+..|..+|+.+|.+|..
T Consensus       291 ~~~~~A~~~g~~aa~~i~~  309 (315)
T 3r9u_A          291 KQVICAAGDGAVAALSAMA  309 (315)
T ss_dssp             CCHHHHHHHHHHHHHHHHH
T ss_pred             hhhhhHHhhHHHHHHHHHH
Confidence            2566788999999988863

>3itj_A Thioredoxin reductase 1; disulfide B flavoprotein, NADP, oxidoreductase, phosphoprotein, redox-A center; HET: FAD CIT; 2.40A {Saccharomyces cerevisiae} PDB: 3d8x_A*

Probab=100.00  E-value=1.6e-34  Score=281.70  Aligned_cols=284  Identities=18%  Similarity=0.223  Sum_probs=200.3

Q ss_pred             CCCCCCcEEEEcCcHHHHHHHHHHHHcCCCCCcEEEEcCCCCCCCCCCCCcccccCCCCCCCCCCCCCcc-ccCCCCCCC
Q 012165           47 FANENREFVIVGGGNAAGYAARTFVEHGMADGRLCIVSKEAYAPYERPALTKGYLFPLDKKPARLPGFHT-CVGSGGERQ  125 (469)
Q Consensus        47 ~~~~~~~vvIIGgG~AGl~aA~~L~~~g~~~~~V~vie~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~  125 (469)
                      ...+++||+|||||+||+++|..|++.|+   +|+|+|+.+..... +  .. .+.. ......+|++.. .........
T Consensus        18 ~~~~~~~vvIIG~G~aGl~aA~~l~~~g~---~v~vie~~~~~~~~-~--gg-~~~~-~~~~~~~~~~~~~~~~~~~~~~   89 (338)
T 3itj_A           18 GSHVHNKVTIIGSGPAAHTAAIYLARAEI---KPILYEGMMANGIA-A--GG-QLTT-TTEIENFPGFPDGLTGSELMDR   89 (338)
T ss_dssp             ---CEEEEEEECCSHHHHHHHHHHHHTTC---CCEEECCSSBTTBC-T--TC-GGGG-SSEECCSTTCTTCEEHHHHHHH
T ss_pred             CCCCCCCEEEECcCHHHHHHHHHHHHCCC---CEEEEecCCCCCCC-c--Cc-cccc-chhhcccCCCcccCCHHHHHHH
Confidence            34556899999999999999999999987   79999996521111 0  00 1100 000111122110 000011123


Q ss_pred             CHhHHHHCCcEEEeCCcEEEEeCCCcEEEe-----CCCeEEEeccEEeccCCCCCcCCCCCCCC---cCcEEEecCHHHH
Q 012165          126 TPEWYKEKGIEMIYQDPVTSIDIEKQTLIT-----NSGKLLKYGSLIVATGCTASRFPEKIGGY---LPGVHYIRDVADA  197 (469)
Q Consensus       126 ~~~~~~~~~i~~~~~~~v~~id~~~~~v~~-----~~g~~~~yd~lVlAtG~~~~~~~~~~g~~---~~~v~~~~~~~~~  197 (469)
                      ..+++++.+++++.++ |..++.+...+.+     .++.++.||+||+|||+.+. .|.++|..   ..++.+.      
T Consensus        90 ~~~~~~~~gv~i~~~~-v~~i~~~~~~~~v~~~~~~~~~~~~~d~vvlAtG~~~~-~~~~~g~~~~~~~~~~~~------  161 (338)
T 3itj_A           90 MREQSTKFGTEIITET-VSKVDLSSKPFKLWTEFNEDAEPVTTDAIILATGASAK-RMHLPGEETYWQKGISAC------  161 (338)
T ss_dssp             HHHHHHHTTCEEECSC-EEEEECSSSSEEEEETTCSSSCCEEEEEEEECCCEEEC-CCCCTTHHHHBTTTEESC------
T ss_pred             HHHHHHHcCCEEEEeE-EEEEEEcCCEEEEEEEecCCCcEEEeCEEEECcCCCcC-CCCCCCchhccCccEEEc------
Confidence            3456677899999986 9999988765544     46778999999999999876 45555532   1233322      


Q ss_pred             HHHHHh--hhcCCeEEEEcCChHHHHHHHHHHhCCCeEe------------eeHHHHHHc-CcEEEcCCeEEEEEeCCCC
Q 012165          198 DALISS--LEKAKKVVVVGGGYIGMEVAAAAVGWKLDTT------------RYEQLYQQN-GVKFVKGASIKNLEAGSDG  262 (469)
Q Consensus       198 ~~~~~~--~~~~~~vvVvG~G~~g~e~A~~l~~~g~~v~------------~~~~~l~~~-gV~~~~~~~v~~i~~~~~~  262 (469)
                      ......  ...+++++|||+|.+|+|+|..|.+++.+++            .+.+.+.+. ||++++++.+.+++.+ ++
T Consensus       162 ~~~~~~~~~~~~~~v~vvG~G~~g~e~a~~l~~~g~~v~~v~~~~~~~~~~~~~~~l~~~~gv~i~~~~~v~~i~~~-~~  240 (338)
T 3itj_A          162 AVCDGAVPIFRNKPLAVIGGGDSACEEAQFLTKYGSKVFMLVRKDHLRASTIMQKRAEKNEKIEILYNTVALEAKGD-GK  240 (338)
T ss_dssp             HHHHTTSGGGTTSEEEEECSSHHHHHHHHHHTTTSSEEEEECSSSSCCSCHHHHHHHHHCTTEEEECSEEEEEEEES-SS
T ss_pred             hhcccchhhcCCCEEEEECCCHHHHHHHHHHHhcCCEEEEEEcCCccCCCHHHHHHHHhcCCeEEeecceeEEEEcc-cC
Confidence            112222  3468999999999999999999999999988            234455554 9999999999999864 44


Q ss_pred             cEEEEEcCC-----CCEEeCCEEEEccCCccCCchhhhcCCccc-CCCEEe-CCCCCCCCCceEEeccccccCCccCCcc
Q 012165          263 RVAAVKLED-----GSTIDADTIVIGIGAKPTVSPFERVGLNSS-VGGIQV-DGQFRTRMPGIFAIGDVAAFPLKMYDRT  335 (469)
Q Consensus       263 ~v~~v~~~~-----g~~i~~D~vi~a~G~~p~~~~~~~~gl~~~-~g~i~V-d~~~~t~~~~Vfa~GD~a~~~~~~~~~~  335 (469)
                      .+..|.+.+     ++++++|.||+++|++|+..+++. ++..+ +|++.| |++++|+.|+|||+|||+..+.      
T Consensus       241 ~~~~v~~~~~~~g~~~~i~~D~vi~a~G~~p~~~~~~~-~l~~~~~G~i~v~~~~~~t~~~~vya~GD~~~~~~------  313 (338)
T 3itj_A          241 LLNALRIKNTKKNEETDLPVSGLFYAIGHTPATKIVAG-QVDTDEAGYIKTVPGSSLTSVPGFFAAGDVQDSKY------  313 (338)
T ss_dssp             SEEEEEEEETTTTEEEEEECSEEEECSCEEECCGGGBT-TBCBCTTSCBCCCTTSSBCSSTTEEECGGGGCSSC------
T ss_pred             cEEEEEEEECCCCceEEEEeCEEEEEeCCCCChhHhhC-ceEecCCCcEEEcCcccccCCCCEEEeeccCCCCc------
Confidence            555677765     467999999999999999988876 78765 677874 8899999999999999997432      


Q ss_pred             cccchHHHHHHHHHHHHHHHhc
Q 012165          336 ARVEHVDHARQSAQHCIKALLS  357 (469)
Q Consensus       336 ~~~~~~~~A~~~a~~~a~~i~~  357 (469)
                         ..+..|..+|+.+|.+|..
T Consensus       314 ---~~~~~A~~~g~~aa~~i~~  332 (338)
T 3itj_A          314 ---RQAITSAGSGCMAALDAEK  332 (338)
T ss_dssp             ---CCHHHHHHHHHHHHHHHHH
T ss_pred             ---cceeeehhhhHHHHHHHHH
Confidence               2456788899999988864

>3sx6_A Sulfide-quinone reductase, putative; sulfide:quinone oxidoreductase, Cys356Ala variant, integral membrane protein; HET: FAD LMT DCQ; 1.80A {Acidithiobacillus ferrooxidans} PDB: 3t0k_A* 3szc_A* 3sz0_A* 3t2z_A* 3t31_A* 3sy4_A* 3syi_A* 3sxi_A* 3t14_A* 3t2k_A* 3szw_A* 3szf_A* 3kpg_A* 3kpi_A* 3t2y_A* 3kpk_A*

Probab=100.00  E-value=5.9e-34  Score=287.76  Aligned_cols=285  Identities=19%  Similarity=0.207  Sum_probs=207.1

Q ss_pred             CCcEEEEcCcHHHHHHHHHHHH---cCCCCCcEEEEcCCCCCCCCCCCCcccccCCCCCCCCCCCCCccccCCCCCCCCH
Q 012165           51 NREFVIVGGGNAAGYAARTFVE---HGMADGRLCIVSKEAYAPYERPALTKGYLFPLDKKPARLPGFHTCVGSGGERQTP  127 (469)
Q Consensus        51 ~~~vvIIGgG~AGl~aA~~L~~---~g~~~~~V~vie~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  127 (469)
                      ++||||||||+||+++|..|++   .++   +|+|||+++.+.|. |.+.. +... .....++           .....
T Consensus         4 m~~vvIIGgG~aGl~aA~~L~~~~~~g~---~Vtlie~~~~~~~~-~~~~~-~~~g-~~~~~~~-----------~~~l~   66 (437)
T 3sx6_A            4 SAHVVILGAGTGGMPAAYEMKEALGSGH---EVTLISANDYFQFV-PSNPW-VGVG-WKERDDI-----------AFPIR   66 (437)
T ss_dssp             SCEEEEECCSTTHHHHHHHHHHHHGGGS---EEEEECSSSEEECG-GGHHH-HHHT-SSCHHHH-----------EEECH
T ss_pred             CCcEEEECCcHHHHHHHHHHhccCCCcC---EEEEEeCCCCCccc-CCccc-cccC-ccCHHHH-----------HHHHH
Confidence            5799999999999999999999   555   89999999987664 32221 1111 0001111           23456


Q ss_pred             hHHHHCCcEEEeCCcEEEEeCCCcEEEeCCCeEEEeccEEeccCCCCCcCCCCCCCCc--CcEEEecCHHHHHHHHHhhh
Q 012165          128 EWYKEKGIEMIYQDPVTSIDIEKQTLITNSGKLLKYGSLIVATGCTASRFPEKIGGYL--PGVHYIRDVADADALISSLE  205 (469)
Q Consensus       128 ~~~~~~~i~~~~~~~v~~id~~~~~v~~~~g~~~~yd~lVlAtG~~~~~~~~~~g~~~--~~v~~~~~~~~~~~~~~~~~  205 (469)
                      +++++.+++++. .+|+.++++.++|++++++++.||+||+|||++++ .|.++|...  ...+.+.+..+...+.+.+.
T Consensus        67 ~~~~~~gv~~~~-~~v~~id~~~~~V~~~~g~~i~~d~lviAtG~~~~-~~~ipG~~~~~~~~~~~~~~~~a~~~~~~~~  144 (437)
T 3sx6_A           67 HYVERKGIHFIA-QSAEQIDAEAQNITLADGNTVHYDYLMIATGPKLA-FENVPGSDPHEGPVQSICTVDHAERAFAEYQ  144 (437)
T ss_dssp             HHHHTTTCEEEC-SCEEEEETTTTEEEETTSCEEECSEEEECCCCEEC-GGGSTTCSTTTSSEECCSSHHHHHHHHHHHH
T ss_pred             HHHHHCCCEEEE-eEEEEEEcCCCEEEECCCCEEECCEEEECCCCCcC-cccCCCCCcccCcceecccccHHHHHHHHHH
Confidence            778889999986 59999999999999999999999999999999986 456677543  24556667777766654332


Q ss_pred             ---cCCeEEEEcCChH----H--HHHH----HHHHhCCCe-----Ee---------------------eeHHHHHHcCcE
Q 012165          206 ---KAKKVVVVGGGYI----G--MEVA----AAAVGWKLD-----TT---------------------RYEQLYQQNGVK  246 (469)
Q Consensus       206 ---~~~~vvVvG~G~~----g--~e~A----~~l~~~g~~-----v~---------------------~~~~~l~~~gV~  246 (469)
                         .+++++|||+|..    |  +|+|    ..+.++|.+     ++                     .+.+.+++.||+
T Consensus       145 ~~~~~~~~vVVGgG~~~g~~G~~~E~a~~la~~l~~~g~~~~~~~Vtlv~~~~~~~~~~l~~~~~~~~~~~~~l~~~gI~  224 (437)
T 3sx6_A          145 ALLREPGPIVIGAMAGASCFGPAYEYAMIVASDLKKRGMRDKIPSFTFITSEPYIGHLGIQGVGDSKGILTKGLKEEGIE  224 (437)
T ss_dssp             HHHHSCCCEEEEECTTCCCCHHHHHHHHHHHHHHHHTTCGGGCSCEEEEESSSSTTCTTTTCCTTHHHHHHHHHHHTTCE
T ss_pred             HHHhCCCEEEEEcCCCCCcCcHHHHHHHHHHHHHHHcCCcccCcEEEEEcCCccccccccCcchHHHHHHHHHHHHCCCE
Confidence               2556788888554    4  7877    556677754     54                     345778899999


Q ss_pred             EEcCCeEEEEEeCCCCcEEEEEcCC-----CCEEeCCEEEEccCCccCCchhhhcCCcccCCCEEeCCCCCC-CCCceEE
Q 012165          247 FVKGASIKNLEAGSDGRVAAVKLED-----GSTIDADTIVIGIGAKPTVSPFERVGLNSSVGGIQVDGQFRT-RMPGIFA  320 (469)
Q Consensus       247 ~~~~~~v~~i~~~~~~~v~~v~~~~-----g~~i~~D~vi~a~G~~p~~~~~~~~gl~~~~g~i~Vd~~~~t-~~~~Vfa  320 (469)
                      +++++.+++++.  ++........+     ++++++|.+++++|++++..+.+..++..++|+|.||+++|| ++|||||
T Consensus       225 ~~~~~~v~~v~~--~~v~~~~~~~~g~~~~~~~i~~D~vv~~~g~~~~~~~~~~~gl~~~~G~i~Vd~~l~t~~~~~Ifa  302 (437)
T 3sx6_A          225 AYTNCKVTKVED--NKMYVTQVDEKGETIKEMVLPVKFGMMIPAFKGVPAVAGVEGLCNPGGFVLVDEHQRSKKYANIFA  302 (437)
T ss_dssp             EECSEEEEEEET--TEEEEEEECTTSCEEEEEEEECSEEEEECCEECCHHHHTSTTTBCTTSCBCBCTTSBBSSCTTEEE
T ss_pred             EEcCCEEEEEEC--CeEEEEecccCCccccceEEEEeEEEEcCCCcCchhhhccccccCCCCcEEeChhccCCCCCCEEE
Confidence            999999999973  22211112233     567999999999999988555444677656788999999999 9999999


Q ss_pred             eccccccCCccCCcc---cccchHHHHHHHHHHHHHHHhc
Q 012165          321 IGDVAAFPLKMYDRT---ARVEHVDHARQSAQHCIKALLS  357 (469)
Q Consensus       321 ~GD~a~~~~~~~~~~---~~~~~~~~A~~~a~~~a~~i~~  357 (469)
                      +|||+..+... +..   ........|..||+.+|+||..
T Consensus       303 ~GD~~~~~~~~-~~~~~~~~pk~~~~A~~qg~~aA~ni~~  341 (437)
T 3sx6_A          303 AGIAIAIPPVE-TTPVPTGAPKTGYMIESMVSAAVHNIKA  341 (437)
T ss_dssp             CGGGBCCCCSC-CCSSCCCCCCCHHHHHHHHHHHHHHHHH
T ss_pred             EEEEeccCCcC-CCcCCCCCCcHHHHHHHHHHHHHHHHHH
Confidence            99999876421 110   1123566799999999999974

>1trb_A Thioredoxin reductase; oxidoreductase(flavoenzyme); HET: FAD; 2.00A {Escherichia coli} SCOP: c.3.1.5 c.3.1.5 PDB: 1cl0_A* 1f6m_A* 1tdf_A* 1tde_A*

Probab=100.00  E-value=6.2e-34  Score=275.73  Aligned_cols=276  Identities=19%  Similarity=0.257  Sum_probs=196.4

Q ss_pred             CCCcEEEEcCcHHHHHHHHHHHHcCCCCCcEEEEcCCCCCCCCCCCCcccccCCCCCCCCCCCCCcc-ccCCCCCCCCHh
Q 012165           50 ENREFVIVGGGNAAGYAARTFVEHGMADGRLCIVSKEAYAPYERPALTKGYLFPLDKKPARLPGFHT-CVGSGGERQTPE  128 (469)
Q Consensus        50 ~~~~vvIIGgG~AGl~aA~~L~~~g~~~~~V~vie~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~  128 (469)
                      +++||+|||||+||+++|..|++.|+   +|+|+|+... ...       +...  .....+|.+.. ............
T Consensus         4 ~~~~vvIIG~G~aGl~aA~~l~~~g~---~v~lie~~~~-gg~-------~~~~--~~~~~~~~~~~~~~~~~~~~~~~~   70 (320)
T 1trb_A            4 KHSKLLILGSGPAGYTAAVYAARANL---QPVLITGMEK-GGQ-------LTTT--TEVENWPGDPNDLTGPLLMERMHE   70 (320)
T ss_dssp             EEEEEEEECCSHHHHHHHHHHHTTTC---CCEEECCSST-TGG-------GGGC--SBCCCSTTCCSSCBHHHHHHHHHH
T ss_pred             CcCCEEEECcCHHHHHHHHHHHHCCC---cEEEEccCCC-Cce-------Eecc--hhhhhCCCCCCCCCHHHHHHHHHH
Confidence            45799999999999999999999987   7999996421 100       0000  00011111110 000000112334


Q ss_pred             HHHHCCcEEEeCCcEEEEeCCCcEEE-eCCCeEEEeccEEeccCCCCCcCCCCCCCC---cCcEEEecCHHHHHHHHHhh
Q 012165          129 WYKEKGIEMIYQDPVTSIDIEKQTLI-TNSGKLLKYGSLIVATGCTASRFPEKIGGY---LPGVHYIRDVADADALISSL  204 (469)
Q Consensus       129 ~~~~~~i~~~~~~~v~~id~~~~~v~-~~~g~~~~yd~lVlAtG~~~~~~~~~~g~~---~~~v~~~~~~~~~~~~~~~~  204 (469)
                      ++.+.+++++.+ ++..++.....++ +.++.++.||+||+|||+.|. .|.+++..   ..++++..      .....+
T Consensus        71 ~~~~~~~~~~~~-~v~~i~~~~~~~~v~~~~~~~~~~~lv~AtG~~~~-~~~~~g~~~~~~~~~~~~~------~~~~~~  142 (320)
T 1trb_A           71 HATKFETEIIFD-HINKVDLQNRPFRLNGDNGEYTCDALIIATGASAR-YLGLPSEEAFKGRGVSACA------TSDGFF  142 (320)
T ss_dssp             HHHHTTCEEECC-CEEEEECSSSSEEEEESSCEEEEEEEEECCCEEEC-CCCCHHHHHTBTTTEESCH------HHHGGG
T ss_pred             HHHHCCCEEEEe-eeeEEEecCCEEEEEeCCCEEEcCEEEECCCCCcC-CCCCCChHHhCCceeEecc------cCCccc
Confidence            567789999987 5999988665443 567778999999999999876 45444421   12343322      122234


Q ss_pred             hcCCeEEEEcCChHHHHHHHHHHhCCCeEe----------------eeHHHHHHcCcEEEcCCeEEEEEeCCCCcEEEEE
Q 012165          205 EKAKKVVVVGGGYIGMEVAAAAVGWKLDTT----------------RYEQLYQQNGVKFVKGASIKNLEAGSDGRVAAVK  268 (469)
Q Consensus       205 ~~~~~vvVvG~G~~g~e~A~~l~~~g~~v~----------------~~~~~l~~~gV~~~~~~~v~~i~~~~~~~v~~v~  268 (469)
                      ..+++++|||+|.+|+|+|..|.+++.+++                .+.+.+++.||++++++.+++++.+ ++.+.+|.
T Consensus       143 ~~~~~v~ViG~G~~g~e~A~~l~~~g~~Vtlv~~~~~~~~~~~~~~~l~~~l~~~gv~i~~~~~v~~i~~~-~~~v~~v~  221 (320)
T 1trb_A          143 YRNQKVAVIGGGNTAVEEALYLSNIASEVHLIHRRDGFRAEKILIKRLMDKVENGNIILHTNRTLEEVTGD-QMGVTGVR  221 (320)
T ss_dssp             GTTSEEEEECSSHHHHHHHHHHTTTSSEEEEECSSSSCCCCHHHHHHHHHHHHTSSEEEECSCEEEEEEEC-SSSEEEEE
T ss_pred             cCCCeEEEECCCHHHHHHHHHHHhcCCeEEEEEeCCccccCHHHHHHHHHhcccCCeEEEcCceeEEEEcC-CCceEEEE
Confidence            578999999999999999999999999887                2344556689999999999999864 44565677


Q ss_pred             cCC----C--CEEeCCEEEEccCCccCCchhhhcCCcccCCCEEeCCCC-----CCCCCceEEeccccccCCccCCcccc
Q 012165          269 LED----G--STIDADTIVIGIGAKPTVSPFERVGLNSSVGGIQVDGQF-----RTRMPGIFAIGDVAAFPLKMYDRTAR  337 (469)
Q Consensus       269 ~~~----g--~~i~~D~vi~a~G~~p~~~~~~~~gl~~~~g~i~Vd~~~-----~t~~~~Vfa~GD~a~~~~~~~~~~~~  337 (469)
                      +.+    |  +++++|.||+|+|++|++++++ .++..++|++.||+++     +|++|+|||+|||+..+..       
T Consensus       222 ~~~~~~~g~~~~i~~D~vv~a~G~~p~~~~~~-~~l~~~~G~i~vd~~~~~~~~~t~~~~vya~GD~~~~~~~-------  293 (320)
T 1trb_A          222 LRDTQNSDNIESLDVAGLFVAIGHSPNTAIFE-GQLELENGYIKVQSGIHGNATQTSIPGVFAAGDVMDHIYR-------  293 (320)
T ss_dssp             EECCTTCCCCEEEECSEEEECSCEEESCGGGT-TTSCEETTEECCCCSSSSCTTBCSSTTEEECGGGGCSSSC-------
T ss_pred             EEeccCCCceEEEEcCEEEEEeCCCCChHHhc-ccccccCceEEECCCcccccccCCCCCEEEcccccCCcch-------
Confidence            654    4  5799999999999999998887 4566557889999987     7999999999999986421       


Q ss_pred             cchHHHHHHHHHHHHHHHhc
Q 012165          338 VEHVDHARQSAQHCIKALLS  357 (469)
Q Consensus       338 ~~~~~~A~~~a~~~a~~i~~  357 (469)
                        .+..|..+|+.+|.+|..
T Consensus       294 --~~~~A~~~g~~aa~~i~~  311 (320)
T 1trb_A          294 --QAITSAGTGCMAALDAER  311 (320)
T ss_dssp             --CHHHHHHHHHHHHHHHHH
T ss_pred             --hhhhhhccHHHHHHHHHH
Confidence              455688888888888753

>1vdc_A NTR, NADPH dependent thioredoxin reductase; hypothetical protein, redox-active center, oxidoreductase, D oxidoreductase; HET: FAD; 2.50A {Arabidopsis thaliana} SCOP: c.3.1.5 c.3.1.5 PDB: 2whd_A*

Probab=100.00  E-value=7.8e-34  Score=276.66  Aligned_cols=278  Identities=19%  Similarity=0.235  Sum_probs=195.5

Q ss_pred             CCCCcEEEEcCcHHHHHHHHHHHHcCCCCCcEEEEcCC----CCCCCCCCCCcccccCCCCCCCCCCCCCcc-ccCCCCC
Q 012165           49 NENREFVIVGGGNAAGYAARTFVEHGMADGRLCIVSKE----AYAPYERPALTKGYLFPLDKKPARLPGFHT-CVGSGGE  123 (469)
Q Consensus        49 ~~~~~vvIIGgG~AGl~aA~~L~~~g~~~~~V~vie~~----~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~-~~~~~~~  123 (469)
                      ++++||+|||||++|+++|..|++.|+   +|+|+|+.    ......       +...  .....++.+.. .......
T Consensus         6 ~~~~~vvIIG~G~aGl~~A~~l~~~g~---~v~lie~~~~~~~~~gg~-------~~~~--~~~~~~~~~~~~~~~~~~~   73 (333)
T 1vdc_A            6 THNTRLCIVGSGPAAHTAAIYAARAEL---KPLLFEGWMANDIAPGGQ-------LTTT--TDVENFPGFPEGILGVELT   73 (333)
T ss_dssp             EEEEEEEEECCSHHHHHHHHHHHHTTC---CCEEECCSSBTTBCTTCG-------GGGC--SEECCSTTCTTCEEHHHHH
T ss_pred             CCCCCEEEECcCHHHHHHHHHHHHCCC---eEEEEeccCccccCCCce-------eeec--cccccCCCCccCCCHHHHH
Confidence            345799999999999999999999987   79999982    211100       0000  00011121110 0000011


Q ss_pred             CCCHhHHHHCCcEEEeCCcEEEEeCCCc--EEEeCCCeEEEeccEEeccCCCCCcCCCCCCCCc-------CcEEEecCH
Q 012165          124 RQTPEWYKEKGIEMIYQDPVTSIDIEKQ--TLITNSGKLLKYGSLIVATGCTASRFPEKIGGYL-------PGVHYIRDV  194 (469)
Q Consensus       124 ~~~~~~~~~~~i~~~~~~~v~~id~~~~--~v~~~~g~~~~yd~lVlAtG~~~~~~~~~~g~~~-------~~v~~~~~~  194 (469)
                      ....+++++.+++++.+. |..++....  +|++ ++.++.||+||+|||+++. .|.+++...       .+++..   
T Consensus        74 ~~l~~~~~~~gv~~~~~~-v~~i~~~~~~~~v~~-~~~~~~~~~vv~A~G~~~~-~~~~~g~~~~~~~~~~~~~~~~---  147 (333)
T 1vdc_A           74 DKFRKQSERFGTTIFTET-VTKVDFSSKPFKLFT-DSKAILADAVILAIGAVAK-RLSFVGSGEVLGGFWNRGISAC---  147 (333)
T ss_dssp             HHHHHHHHHTTCEEECCC-CCEEECSSSSEEEEC-SSEEEEEEEEEECCCEEEC-CCCCBTCSSSSSCCBTTTEESC---
T ss_pred             HHHHHHHHHCCCEEEEeE-EEEEEEcCCEEEEEE-CCcEEEcCEEEECCCCCcC-CCCCCCccccccccccCcEEEe---
Confidence            123345667899999874 889987655  6766 7788999999999999876 455566432       223222   


Q ss_pred             HHHHHHHHhh--hcCCeEEEEcCChHHHHHHHHHHhCCCeEe------------ee-HHHHHHcCcEEEcCCeEEEEEeC
Q 012165          195 ADADALISSL--EKAKKVVVVGGGYIGMEVAAAAVGWKLDTT------------RY-EQLYQQNGVKFVKGASIKNLEAG  259 (469)
Q Consensus       195 ~~~~~~~~~~--~~~~~vvVvG~G~~g~e~A~~l~~~g~~v~------------~~-~~~l~~~gV~~~~~~~v~~i~~~  259 (469)
                         ..+....  ..+++++|||+|.+|+|+|..|.+++.+++            .+ ++.+++.||++++++.+.+++.+
T Consensus       148 ---~~~~~~~~~~~~~~v~VvG~G~~g~e~A~~l~~~g~~V~lv~~~~~~~~~~~~~~~~~~~~gv~i~~~~~v~~i~~~  224 (333)
T 1vdc_A          148 ---AVCDGAAPIFRNKPLAVIGGGDSAMEEANFLTKYGSKVYIIHRRDAFRASKIMQQRALSNPKIDVIWNSSVVEAYGD  224 (333)
T ss_dssp             ---HHHHTTSGGGTTSEEEEECCSHHHHHHHHHHTTTSSEEEEECSSSSCCSCHHHHHHHHTCTTEEEECSEEEEEEEES
T ss_pred             ---ccCccchhhcCCCeEEEECCChHHHHHHHHHHhcCCeEEEEecCCcCCccHHHHHHHHhCCCeeEecCCceEEEeCC
Confidence               1122222  568999999999999999999999999987            12 24456789999999999999864


Q ss_pred             CCC-cEEEEEcC---CC--CEEeCCEEEEccCCccCCchhhhcCCccc-CCCEEeCCC-CCCCCCceEEeccccccCCcc
Q 012165          260 SDG-RVAAVKLE---DG--STIDADTIVIGIGAKPTVSPFERVGLNSS-VGGIQVDGQ-FRTRMPGIFAIGDVAAFPLKM  331 (469)
Q Consensus       260 ~~~-~v~~v~~~---~g--~~i~~D~vi~a~G~~p~~~~~~~~gl~~~-~g~i~Vd~~-~~t~~~~Vfa~GD~a~~~~~~  331 (469)
                      +++ .+..+.+.   +|  +++++|.||+++|++|++++++ .++..+ +|+|.||++ ++|+.|+|||+|||+..+.. 
T Consensus       225 ~~~~~v~~v~~~~~~~g~~~~i~~D~vi~a~G~~p~~~~~~-~~l~~~~~G~i~vd~~~~~t~~~~vya~GD~~~~~~~-  302 (333)
T 1vdc_A          225 GERDVLGGLKVKNVVTGDVSDLKVSGLFFAIGHEPATKFLD-GGVELDSDGYVVTKPGTTQTSVPGVFAAGDVQDKKYR-  302 (333)
T ss_dssp             SSSSSEEEEEEEETTTCCEEEEECSEEEECSCEEESCGGGT-TSSCBCTTSCBCCCTTSCBCSSTTEEECGGGGCSSCC-
T ss_pred             CCccceeeEEEEecCCCceEEEecCEEEEEeCCccchHHhh-ccccccCCCCEEechhhcccCCCCEEEeeeccCCCch-
Confidence            321 55456664   45  5799999999999999998876 467655 678999986 68999999999999986421 


Q ss_pred             CCcccccchHHHHHHHHHHHHHHHhc
Q 012165          332 YDRTARVEHVDHARQSAQHCIKALLS  357 (469)
Q Consensus       332 ~~~~~~~~~~~~A~~~a~~~a~~i~~  357 (469)
                              .+..|..+|+.+|.+|..
T Consensus       303 --------~~~~A~~~g~~aa~~i~~  320 (333)
T 1vdc_A          303 --------QAITAAGTGCMAALDAEH  320 (333)
T ss_dssp             --------CHHHHHHHHHHHHHHHHH
T ss_pred             --------hHHHHHHhHHHHHHHHHH
Confidence                    455688888888887753

>3h8l_A NADH oxidase; membrane protein, complete form, rossman-like fold, oxidoreductase; HET: FAD; 2.57A {Acidianus ambivalens} PDB: 3h8i_A*

Probab=100.00  E-value=3e-33  Score=280.42  Aligned_cols=272  Identities=20%  Similarity=0.200  Sum_probs=204.4

Q ss_pred             CCcEEEEcCcHHHHHHHHHHHH---cCCCCCcEEEEcCCCCCCCCCCCCcccccCCCCCCCCCCCCCccccCCCCCCCCH
Q 012165           51 NREFVIVGGGNAAGYAARTFVE---HGMADGRLCIVSKEAYAPYERPALTKGYLFPLDKKPARLPGFHTCVGSGGERQTP  127 (469)
Q Consensus        51 ~~~vvIIGgG~AGl~aA~~L~~---~g~~~~~V~vie~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  127 (469)
                      |++|+|||||+||+++|..|++   .|.   +|+|||+++.+.|. |.++.. ... .....++           .....
T Consensus         1 m~~VvIIGgG~aGl~aA~~L~~~~~~g~---~V~vie~~~~~~~~-~~~~~~-~~~-~~~~~~~-----------~~~~~   63 (409)
T 3h8l_A            1 MTKVLVLGGRFGALTAAYTLKRLVGSKA---DVKVINKSRFSYFR-PALPHV-AIG-VRDVDEL-----------KVDLS   63 (409)
T ss_dssp             -CEEEEECSSHHHHHHHHHHHHHHGGGS---EEEEEESSSEEEEC-CSSCCC-CSS-CCCCCCE-----------EEEHH
T ss_pred             CCeEEEECCCHHHHHHHHHHHhhCCCCC---eEEEEeCCCCceec-cchhhc-ccC-CcCHHHH-----------HHHHH
Confidence            3689999999999999999999   665   89999999876544 433321 111 1111111           22345


Q ss_pred             hHHHHCCcEEEeCCcEEEEeCCCcEEEeCCCeE----EEeccEEeccCCCCCcCCCCCCCCcCcEEEecCHHHHHHHHHh
Q 012165          128 EWYKEKGIEMIYQDPVTSIDIEKQTLITNSGKL----LKYGSLIVATGCTASRFPEKIGGYLPGVHYIRDVADADALISS  203 (469)
Q Consensus       128 ~~~~~~~i~~~~~~~v~~id~~~~~v~~~~g~~----~~yd~lVlAtG~~~~~~~~~~g~~~~~v~~~~~~~~~~~~~~~  203 (469)
                      +++++.+++++.+ +|+.++++.+.|++.++..    +.||+||+|||++|. .|.++|... ....+.+..+...+.+.
T Consensus        64 ~~~~~~gv~~~~~-~v~~i~~~~~~V~~~~g~~~~~~~~~d~lViAtG~~~~-~~~ipG~~~-~~~~~~~~~~~~~~~~~  140 (409)
T 3h8l_A           64 EALPEKGIQFQEG-TVEKIDAKSSMVYYTKPDGSMAEEEYDYVIVGIGAHLA-TELVKGWDK-YGYSVCEPEFATKLREK  140 (409)
T ss_dssp             HHTGGGTCEEEEC-EEEEEETTTTEEEEECTTSCEEEEECSEEEECCCCEEC-GGGSBTHHH-HCEESSSTTHHHHHHHH
T ss_pred             HHHhhCCeEEEEe-eEEEEeCCCCEEEEccCCcccceeeCCEEEECCCCCcC-ccCCCChhh-cCcCcCCHHHHHHHHHH
Confidence            6677889999987 9999999999999887753    999999999999876 455555322 34455666666666665


Q ss_pred             hhcC-CeEEEEcCCh-------------------------HHHHHHH----HHHhCCC----eEe---------------
Q 012165          204 LEKA-KKVVVVGGGY-------------------------IGMEVAA----AAVGWKL----DTT---------------  234 (469)
Q Consensus       204 ~~~~-~~vvVvG~G~-------------------------~g~e~A~----~l~~~g~----~v~---------------  234 (469)
                      +... ++++|||+|.                         +++|+|.    .+.+.|.    +++               
T Consensus       141 l~~~~~~~vViG~G~f~~~~~~~~~~p~~~~p~~~~~~~~~~~e~a~~~~~~l~~~g~~~~~~v~~~~~~~~l~~~~~~~  220 (409)
T 3h8l_A          141 LESFQGGNIAIGSGPFYQGHNPKPKVPENFVPNADSACEGPVFEMSLMLHGYFKKKGMLDKVHVTVFSPGEYLSDLSPNS  220 (409)
T ss_dssp             HHHCCSEEEEEEECCBCCCCSSCCBSCTTSSCCCSCSSCHHHHHHHHHHHHHHHTTTCTTTEEEEEECSSSSSTTBCHHH
T ss_pred             HHHhcCCeEEEEecccccCCCccccccccccCCCCcccCCHHHHHHHHHHHHHHHcCCCCCeEEEEEeCCccccccCHHH
Confidence            5442 6777999992                         4677774    5556663    554               


Q ss_pred             --eeHHHHHHcCcEEEcCCeEEEEEeCCCCcEEEEEcCCCCEEeCCEEEEccCCccCCchhhhc--CCcccCCCEEeCCC
Q 012165          235 --RYEQLYQQNGVKFVKGASIKNLEAGSDGRVAAVKLEDGSTIDADTIVIGIGAKPTVSPFERV--GLNSSVGGIQVDGQ  310 (469)
Q Consensus       235 --~~~~~l~~~gV~~~~~~~v~~i~~~~~~~v~~v~~~~g~~i~~D~vi~a~G~~p~~~~~~~~--gl~~~~g~i~Vd~~  310 (469)
                        .+.+.+++.||++++++.|++++.+      .+.+++|+++++|.+|+++|++|+ ++++++  ++..++|+|.||++
T Consensus       221 ~~~~~~~l~~~gV~~~~~~~v~~i~~~------~v~~~~g~~~~~D~vi~a~G~~~~-~~l~~~~~~l~~~~G~i~vd~~  293 (409)
T 3h8l_A          221 RKAVASIYNQLGIKLVHNFKIKEIREH------EIVDEKGNTIPADITILLPPYTGN-PALKNSTPDLVDDGGFIPTDLN  293 (409)
T ss_dssp             HHHHHHHHHHHTCEEECSCCEEEECSS------EEEETTSCEEECSEEEEECCEECC-HHHHTSCGGGSCTTSCBCBBTT
T ss_pred             HHHHHHHHHHCCCEEEcCCceEEECCC------eEEECCCCEEeeeEEEECCCCCcc-HHHHhccccCcCCCCCEEeCcc
Confidence              4567788999999999999999742      378899999999999999999998 677777  55445678999999


Q ss_pred             CCC-CCCceEEeccccccCCccCCcccccchHHHHHHHHHHHHHHHhc
Q 012165          311 FRT-RMPGIFAIGDVAAFPLKMYDRTARVEHVDHARQSAQHCIKALLS  357 (469)
Q Consensus       311 ~~t-~~~~Vfa~GD~a~~~~~~~~~~~~~~~~~~A~~~a~~~a~~i~~  357 (469)
                      +|| ++|||||+|||+..+.+.        .+..|..||+.+|+||.+
T Consensus       294 ~~~~~~~~vfa~GD~~~~~~~~--------~~~~A~~q~~~aa~~i~~  333 (409)
T 3h8l_A          294 MVSIKYDNVYAVGDANSMTVPK--------LGYLAVMTGRIAAQHLAN  333 (409)
T ss_dssp             SBBSSCTTEEECGGGBTTCCSC--------CHHHHHHHHHHHHHHHHH
T ss_pred             cccCCCCCEEEeehhccCCCCc--------HHHHHHHHHHHHHHHHHH
Confidence            999 899999999999864321        455689999999999975

>2a87_A TRXR, TR, thioredoxin reductase; FAD, NAP, NMA, TLS, oxidoreduct structural genomics, PSI, protein structure initiative; HET: FAD NAP; 3.00A {Mycobacterium tuberculosis}

Probab=100.00  E-value=4e-33  Score=271.97  Aligned_cols=276  Identities=18%  Similarity=0.292  Sum_probs=194.2

Q ss_pred             CCCCCcEEEEcCcHHHHHHHHHHHHcCCCCCcEEEEcCCCCCCCCCCCCcccccCCCCCCCCCCCCCcc-ccCCCCCCCC
Q 012165           48 ANENREFVIVGGGNAAGYAARTFVEHGMADGRLCIVSKEAYAPYERPALTKGYLFPLDKKPARLPGFHT-CVGSGGERQT  126 (469)
Q Consensus        48 ~~~~~~vvIIGgG~AGl~aA~~L~~~g~~~~~V~vie~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~  126 (469)
                      +++++||+|||||+||+++|..|++.|+   +|+|+|+..... .       +...  .....+|.+.. ..........
T Consensus        11 ~~~~~~vvIIG~G~aGl~aA~~l~~~g~---~v~lie~~~~gg-~-------~~~~--~~~~~~~~~~~~~~~~~~~~~l   77 (335)
T 2a87_A           11 HHPVRDVIVIGSGPAGYTAALYAARAQL---APLVFEGTSFGG-A-------LMTT--TDVENYPGFRNGITGPELMDEM   77 (335)
T ss_dssp             CCCCEEEEEECCHHHHHHHHHHHHHTTC---CCEEECCSSCSC-G-------GGSC--SCBCCSTTCTTCBCHHHHHHHH
T ss_pred             cCCcCCEEEECCCHHHHHHHHHHHhCCC---eEEEEecCCCCC-c-------eecc--chhhhcCCCCCCCCHHHHHHHH
Confidence            3456899999999999999999999987   799999652111 0       0000  00011121110 0000011123


Q ss_pred             HhHHHHCCcEEEeCCcEEEEeCCC-cEE-EeCCCeEEEeccEEeccCCCCCcCCCCCCCC---cCcEEEecCHHHHHHHH
Q 012165          127 PEWYKEKGIEMIYQDPVTSIDIEK-QTL-ITNSGKLLKYGSLIVATGCTASRFPEKIGGY---LPGVHYIRDVADADALI  201 (469)
Q Consensus       127 ~~~~~~~~i~~~~~~~v~~id~~~-~~v-~~~~g~~~~yd~lVlAtG~~~~~~~~~~g~~---~~~v~~~~~~~~~~~~~  201 (469)
                      .+++++.+++++.+. |..++..+ .+| .+++++++.||+||+|||+.|. .|.++|..   ..+++...      ...
T Consensus        78 ~~~~~~~~v~~~~~~-v~~i~~~~~~~v~~~~~g~~~~~d~lviAtG~~~~-~~~i~g~~~~~~~~~~~~~------~~~  149 (335)
T 2a87_A           78 REQALRFGADLRMED-VESVSLHGPLKSVVTADGQTHRARAVILAMGAAAR-YLQVPGEQELLGRGVSSCA------TCD  149 (335)
T ss_dssp             HHHHHHTTCEEECCC-EEEEECSSSSEEEEETTSCEEEEEEEEECCCEEEC-CCCCTHHHHTBTTTEESCH------HHH
T ss_pred             HHHHHHcCCEEEEee-EEEEEeCCcEEEEEeCCCCEEEeCEEEECCCCCcc-CCCCCchHhccCCceEEee------ccc
Confidence            345667899999874 99998732 467 7888888999999999999876 45444422   12333321      122


Q ss_pred             HhhhcCCeEEEEcCChHHHHHHHHHHhCCCeEe------------eeH-HHHHHcCcEEEcCCeEEEEEeCCCCcEEEEE
Q 012165          202 SSLEKAKKVVVVGGGYIGMEVAAAAVGWKLDTT------------RYE-QLYQQNGVKFVKGASIKNLEAGSDGRVAAVK  268 (469)
Q Consensus       202 ~~~~~~~~vvVvG~G~~g~e~A~~l~~~g~~v~------------~~~-~~l~~~gV~~~~~~~v~~i~~~~~~~v~~v~  268 (469)
                      ..+..+++++|||+|.+|+|+|..|.+++.+++            .+. +.+++.||++++++.+++++.+  +.+..+.
T Consensus       150 ~~~~~~~~v~ViG~G~~g~e~a~~l~~~g~~V~l~~~~~~~~~~~~~~~~~~~~~gV~v~~~~~v~~i~~~--~~~~~v~  227 (335)
T 2a87_A          150 GFFFRDQDIAVIGGGDSAMEEATFLTRFARSVTLVHRRDEFRASKIMLDRARNNDKIRFLTNHTVVAVDGD--TTVTGLR  227 (335)
T ss_dssp             GGGGTTCEEEEECSSHHHHHHHHHHTTTCSEEEEECSSSSCSSCTTHHHHHHHCTTEEEECSEEEEEEECS--SSCCEEE
T ss_pred             hhhcCCCEEEEECCCHHHHHHHHHHHHhCCeEEEEEcCCcCCccHHHHHHHhccCCcEEEeCceeEEEecC--CcEeEEE
Confidence            334578999999999999999999999999987            122 4557799999999999999853  2333444


Q ss_pred             cC---CC--CEEeCCEEEEccCCccCCchhhhcCCccc-CCCEEeCCC-CCCCCCceEEeccccccCCccCCcccccchH
Q 012165          269 LE---DG--STIDADTIVIGIGAKPTVSPFERVGLNSS-VGGIQVDGQ-FRTRMPGIFAIGDVAAFPLKMYDRTARVEHV  341 (469)
Q Consensus       269 ~~---~g--~~i~~D~vi~a~G~~p~~~~~~~~gl~~~-~g~i~Vd~~-~~t~~~~Vfa~GD~a~~~~~~~~~~~~~~~~  341 (469)
                      +.   +|  +++++|.||+++|++|++++++ .++..+ +|+|.||++ ++|+.|+|||+|||+..+..         .+
T Consensus       228 ~~~~~~g~~~~i~~D~vi~a~G~~p~~~~~~-~~l~~~~~G~i~vd~~~~~t~~~~iya~GD~~~~~~~---------~~  297 (335)
T 2a87_A          228 VRDTNTGAETTLPVTGVFVAIGHEPRSGLVR-EAIDVDPDGYVLVQGRTTSTSLPGVFAAGDLVDRTYR---------QA  297 (335)
T ss_dssp             EEEETTSCCEEECCSCEEECSCEEECCTTTB-TTBCBCTTSCBCCSTTSSBCSSTTEEECGGGTCCSCC---------CH
T ss_pred             EEEcCCCceEEeecCEEEEccCCccChhHhh-cccccCCCccEEeCCCCCccCCCCEEEeeecCCccHH---------HH
Confidence            43   45  5799999999999999998886 466655 688999985 68999999999999986421         34


Q ss_pred             HHHHHHHHHHHHHHh
Q 012165          342 DHARQSAQHCIKALL  356 (469)
Q Consensus       342 ~~A~~~a~~~a~~i~  356 (469)
                      ..|..+|+.+|.+|.
T Consensus       298 ~~A~~~g~~aA~~i~  312 (335)
T 2a87_A          298 VTAAGSGCAAAIDAE  312 (335)
T ss_dssp             HHHHHHHHHHHHHHH
T ss_pred             HHHHHhHHHHHHHHH
Confidence            557788888888775

>1hyu_A AHPF, alkyl hydroperoxide reductase subunit F; thiol-thiolate hydrogen bond, nucleotide binding fold, thior reductase, thioredoxin; HET: FAD; 2.00A {Salmonella typhimurium} SCOP: c.3.1.5 c.3.1.5 c.47.1.2 c.47.1.2 PDB: 1zyn_A 1zyp_A

Probab=100.00  E-value=2.3e-32  Score=281.49  Aligned_cols=276  Identities=22%  Similarity=0.316  Sum_probs=201.2

Q ss_pred             CCCCcEEEEcCcHHHHHHHHHHHHcCCCCCcEEEEcCCCCCCC-CCCCCcccccCCCCCCCCCCCCCccccCCCCCCCCH
Q 012165           49 NENREFVIVGGGNAAGYAARTFVEHGMADGRLCIVSKEAYAPY-ERPALTKGYLFPLDKKPARLPGFHTCVGSGGERQTP  127 (469)
Q Consensus        49 ~~~~~vvIIGgG~AGl~aA~~L~~~g~~~~~V~vie~~~~~~~-~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  127 (469)
                      ...+||+|||||+||+++|.+|++.|+   +++|+|+.....+ ....+            ..++.+.............
T Consensus       210 ~~~~dVvIIGgG~AGl~aA~~la~~G~---~v~lie~~~GG~~~~~~~~------------~~~~~~~~~~~~~l~~~l~  274 (521)
T 1hyu_A          210 RDAYDVLIVGSGPAGAAAAVYSARKGI---RTGLMGERFGGQVLDTVDI------------ENYISVPKTEGQKLAGALK  274 (521)
T ss_dssp             SCCEEEEEECCSHHHHHHHHHHHHTTC---CEEEECSSTTGGGTTCSCB------------CCBTTBSSBCHHHHHHHHH
T ss_pred             cCcccEEEECCcHHHHHHHHHHHhCCC---eEEEEECCCCCcccccccc------------cccCCCCCCCHHHHHHHHH
Confidence            346899999999999999999999987   7999986421100 00000            0011100000000011234


Q ss_pred             hHHHHCCcEEEeCCcEEEEeCC-----CcEEEeCCCeEEEeccEEeccCCCCCcCCCCCCCC---cCcEEEecCHHHHHH
Q 012165          128 EWYKEKGIEMIYQDPVTSIDIE-----KQTLITNSGKLLKYGSLIVATGCTASRFPEKIGGY---LPGVHYIRDVADADA  199 (469)
Q Consensus       128 ~~~~~~~i~~~~~~~v~~id~~-----~~~v~~~~g~~~~yd~lVlAtG~~~~~~~~~~g~~---~~~v~~~~~~~~~~~  199 (469)
                      +.+++.+++++.+++|..++++     ..+|++++|.++.||+||+|||++|+ .|.++|..   ..++++....     
T Consensus       275 ~~~~~~gv~v~~~~~v~~i~~~~~~~~~~~V~~~~g~~~~~d~vVlAtG~~~~-~~~ipG~~~~~~~~v~~~~~~-----  348 (521)
T 1hyu_A          275 AHVSDYDVDVIDSQSASKLVPAATEGGLHQIETASGAVLKARSIIIATGAKWR-NMNVPGEDQYRTKGVTYCPHC-----  348 (521)
T ss_dssp             HHHHTSCEEEECSCCEEEEECCSSTTSCEEEEETTSCEEEEEEEEECCCEEEC-CCCCTTTTTTTTTTEECCTTC-----
T ss_pred             HHHHHcCCEEEcCCEEEEEEeccCCCceEEEEECCCCEEEcCEEEECCCCCcC-CCCCCChhhhcCceEEEeecC-----
Confidence            4566789999999899999864     45788889988999999999999876 45556642   2345443221     


Q ss_pred             HHHhhhcCCeEEEEcCChHHHHHHHHHHhCCCeEe------------eeHHHHHH-cCcEEEcCCeEEEEEeCCCCcEEE
Q 012165          200 LISSLEKAKKVVVVGGGYIGMEVAAAAVGWKLDTT------------RYEQLYQQ-NGVKFVKGASIKNLEAGSDGRVAA  266 (469)
Q Consensus       200 ~~~~~~~~~~vvVvG~G~~g~e~A~~l~~~g~~v~------------~~~~~l~~-~gV~~~~~~~v~~i~~~~~~~v~~  266 (469)
                       ......+++++|||+|.+|+|+|..|++.+.+|+            .+.+.+++ .||++++++.++++..+ ++++.+
T Consensus       349 -~~~~~~~k~V~ViGgG~~g~E~A~~L~~~g~~Vtlv~~~~~l~~~~~l~~~l~~~~gV~v~~~~~v~~i~~~-~~~v~~  426 (521)
T 1hyu_A          349 -DGPLFKGKRVAVIGGGNSGVEAAIDLAGIVEHVTLLEFAPEMKADQVLQDKVRSLKNVDIILNAQTTEVKGD-GSKVVG  426 (521)
T ss_dssp             -CGGGGBTSEEEEECCSHHHHHHHHHHHHHBSEEEEECSSSSCCSCHHHHHHHTTCTTEEEECSEEEEEEEEC-SSSEEE
T ss_pred             -chhhcCCCeEEEECCCHHHHHHHHHHHhhCCEEEEEEeCcccCcCHHHHHHHhcCCCcEEEeCCEEEEEEcC-CCcEEE
Confidence             1224578999999999999999999999999887            23455666 69999999999999853 456656


Q ss_pred             EEcCC---CC--EEeCCEEEEccCCccCCchhhhcCCccc-CCCEEeCCCCCCCCCceEEeccccccCCccCCcccccch
Q 012165          267 VKLED---GS--TIDADTIVIGIGAKPTVSPFERVGLNSS-VGGIQVDGQFRTRMPGIFAIGDVAAFPLKMYDRTARVEH  340 (469)
Q Consensus       267 v~~~~---g~--~i~~D~vi~a~G~~p~~~~~~~~gl~~~-~g~i~Vd~~~~t~~~~Vfa~GD~a~~~~~~~~~~~~~~~  340 (469)
                      +.+.+   |+  ++++|.|++++|.+||++++++ .+..+ +|+|.||+++||++|+|||+|||+..+..         .
T Consensus       427 v~~~~~~~g~~~~i~~D~vi~a~G~~pn~~~l~~-~l~~~~~G~I~Vd~~~~ts~p~VfA~GD~~~~~~~---------~  496 (521)
T 1hyu_A          427 LEYRDRVSGDIHSVALAGIFVQIGLLPNTHWLEG-ALERNRMGEIIIDAKCETSVKGVFAAGDCTTVPYK---------Q  496 (521)
T ss_dssp             EEEEETTTCCEEEEECSEEEECCCEEESCGGGTT-TSCBCTTSCBCCCTTCBCSSTTEEECSTTBCCSSC---------C
T ss_pred             EEEEeCCCCceEEEEcCEEEECcCCCCCchHHhh-hhccCCCCcEEeCCCCCCCCCCEEEeecccCCCcc---------e
Confidence            66653   53  6899999999999999998876 36654 67899999999999999999999986532         4


Q ss_pred             HHHHHHHHHHHHHHHhc
Q 012165          341 VDHARQSAQHCIKALLS  357 (469)
Q Consensus       341 ~~~A~~~a~~~a~~i~~  357 (469)
                      +..|+.+|..+|.+|..
T Consensus       497 ~~~A~~~g~~aa~~i~~  513 (521)
T 1hyu_A          497 IIIATGEGAKASLSAFD  513 (521)
T ss_dssp             HHHHHHHHHHHHHHHHH
T ss_pred             eeehHHhHHHHHHHHHH
Confidence            45688888888888753

>4a9w_A Monooxygenase; baeyer-villiger, FAD, oxidoreductase; HET: FAD; 2.72A {Stenotrophomonas maltophilia}

Probab=100.00  E-value=9.6e-33  Score=271.04  Aligned_cols=276  Identities=18%  Similarity=0.278  Sum_probs=184.3

Q ss_pred             CCcEEEEcCcHHHHHHHHHHHHcCCCCCcEEEEcCCCCCCCC----CCCCcccccCCCCCCCCCCCCCccccC-------
Q 012165           51 NREFVIVGGGNAAGYAARTFVEHGMADGRLCIVSKEAYAPYE----RPALTKGYLFPLDKKPARLPGFHTCVG-------  119 (469)
Q Consensus        51 ~~~vvIIGgG~AGl~aA~~L~~~g~~~~~V~vie~~~~~~~~----~~~l~~~~~~~~~~~~~~~~~~~~~~~-------  119 (469)
                      ++||+|||||++|+++|..|+++|+   +|+|+|+++.+...    .+.+   .+.. ......++++.....       
T Consensus         3 ~~~vvIIG~G~aGl~~A~~l~~~g~---~v~vie~~~~~gg~~~~~~~~~---~~~~-~~~~~~~~~~~~~~~~~~~~~~   75 (357)
T 4a9w_A            3 SVDVVVIGGGQSGLSAGYFLRRSGL---SYVILDAEASPGGAWQHAWHSL---HLFS-PAGWSSIPGWPMPASQGPYPAR   75 (357)
T ss_dssp             EEEEEEECCSHHHHHHHHHHHHSSC---CEEEECCSSSSSGGGGGSCTTC---BCSS-CGGGSCCSSSCCCCCSSSSCBH
T ss_pred             cCCEEEECcCHHHHHHHHHHHHCCC---CEEEEECCCCCCCcccCCCCCc---EecC-chhhhhCCCCCCCCCccCCCCH
Confidence            5799999999999999999999987   79999998754210    0000   0000 000011111100000       


Q ss_pred             CCCCCCCHhHHHHCCcEEEeCCcEEEEeCCCcE---EEeCCCeEEEeccEEeccCC--CCCcCCCCCCCC-cCcE-EEec
Q 012165          120 SGGERQTPEWYKEKGIEMIYQDPVTSIDIEKQT---LITNSGKLLKYGSLIVATGC--TASRFPEKIGGY-LPGV-HYIR  192 (469)
Q Consensus       120 ~~~~~~~~~~~~~~~i~~~~~~~v~~id~~~~~---v~~~~g~~~~yd~lVlAtG~--~~~~~~~~~g~~-~~~v-~~~~  192 (469)
                      ........+++++.+++++.+++|++++.++..   |+++++ ++.||+||+|||.  .|. +|.++|.. ..+. .+..
T Consensus        76 ~~~~~~l~~~~~~~~~~~~~~~~v~~i~~~~~~~~~v~~~~g-~~~~d~vV~AtG~~~~~~-~~~~~g~~~~~~~~~~~~  153 (357)
T 4a9w_A           76 AEVLAYLAQYEQKYALPVLRPIRVQRVSHFGERLRVVARDGR-QWLARAVISATGTWGEAY-TPEYQGLESFAGIQLHSA  153 (357)
T ss_dssp             HHHHHHHHHHHHHTTCCEECSCCEEEEEEETTEEEEEETTSC-EEEEEEEEECCCSGGGBC-CCCCTTGGGCCSEEEEGG
T ss_pred             HHHHHHHHHHHHHcCCEEEcCCEEEEEEECCCcEEEEEeCCC-EEEeCEEEECCCCCCCCC-CCCCCCccccCCcEEEec
Confidence            000112234456779999999999999987765   667777 7999999999995  443 45555532 1221 1111


Q ss_pred             CHHHHHHHHHhhhcCCeEEEEcCChHHHHHHHHHHhCCCeEe---------------------eeHHHHH----------
Q 012165          193 DVADADALISSLEKAKKVVVVGGGYIGMEVAAAAVGWKLDTT---------------------RYEQLYQ----------  241 (469)
Q Consensus       193 ~~~~~~~~~~~~~~~~~vvVvG~G~~g~e~A~~l~~~g~~v~---------------------~~~~~l~----------  241 (469)
                      ...+     .....+++++|||+|.+|+|+|..|++.+ +++                     .+.+.+.          
T Consensus       154 ~~~~-----~~~~~~~~v~VvG~G~~g~e~a~~l~~~~-~v~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  227 (357)
T 4a9w_A          154 HYST-----PAPFAGMRVAIIGGGNSGAQILAEVSTVA-ETTWITQHEPAFLADDVDGRVLFERATERWKAQQEGREPDL  227 (357)
T ss_dssp             GCCC-----SGGGTTSEEEEECCSHHHHHHHHHHTTTS-EEEEECSSCCCBCCTTCCTHHHHTC----------------
T ss_pred             cCCC-----hhhcCCCEEEEECCCcCHHHHHHHHHhhC-CEEEEECCCCeecchhhcCccHHHHHHHHHhccccccCCCc
Confidence            1111     11236799999999999999999999987 565                     0111111          


Q ss_pred             ------------------HcCcEEEcCCeEEEEEeCCCCcEEEEEcCCCCEEeCCEEEEccCCccCCchhhhcCCcccCC
Q 012165          242 ------------------QNGVKFVKGASIKNLEAGSDGRVAAVKLEDGSTIDADTIVIGIGAKPTVSPFERVGLNSSVG  303 (469)
Q Consensus       242 ------------------~~gV~~~~~~~v~~i~~~~~~~v~~v~~~~g~~i~~D~vi~a~G~~p~~~~~~~~gl~~~~g  303 (469)
                                        +.|+ +..+..+.+++..      .+.+++|+++++|.||+++|++|++++++++++..++|
T Consensus       228 ~~~~~~~~~~~~~~~~~~~~g~-i~~~~~v~~~~~~------~v~~~~g~~i~~D~vi~a~G~~p~~~~l~~~gl~~~~G  300 (357)
T 4a9w_A          228 PPGGFGDIVMVPPVLDARARGV-LAAVPPPARFSPT------GMQWADGTERAFDAVIWCTGFRPALSHLKGLDLVTPQG  300 (357)
T ss_dssp             ------CBCCCHHHHHHHHTTC-CCEECCCSEEETT------EEECTTSCEEECSEEEECCCBCCCCGGGTTTTCBCTTS
T ss_pred             ccccccCcccChhHHHHHhcCc-eEEecCcceEeCC------eeEECCCCEecCCEEEECCCcCCCCcccCcccccCCCC
Confidence                              3343 4444556666532      57899999999999999999999999999999996678


Q ss_pred             CEEeCCC--CCCCCCceEEec--cccccCCccCCcccccchHHHHHHHHHHHHHHHhc
Q 012165          304 GIQVDGQ--FRTRMPGIFAIG--DVAAFPLKMYDRTARVEHVDHARQSAQHCIKALLS  357 (469)
Q Consensus       304 ~i~Vd~~--~~t~~~~Vfa~G--D~a~~~~~~~~~~~~~~~~~~A~~~a~~~a~~i~~  357 (469)
                      +|.||++  ++|++|+|||+|  ||+.....         .+..|..+|+.+|++|..
T Consensus       301 ~i~vd~~~l~~t~~~~vya~Gd~d~~~~~~~---------~~~~A~~~g~~~a~~i~~  349 (357)
T 4a9w_A          301 QVEVDGSGLRALAVPSVWLLGYGDWNGMASA---------TLIGVTRYAREAVRQVTA  349 (357)
T ss_dssp             CBCBCTTSCBBSSCTTEEECSSCGGGSTTCS---------STTTHHHHHHHHHHHHHH
T ss_pred             CccccCCcccCCCCCCeEEeccccccccchh---------hhhhhHHHHHHHHHHHHH
Confidence            8999999  899999999999  56652211         222377888888888864

>3d1c_A Flavin-containing putative monooxygenase; NP_373108.1, struc genomics, joint center for structural genomics, JCSG; HET: FAD UNL; 2.40A {Staphylococcus aureus}

Probab=99.97  E-value=3e-31  Score=262.01  Aligned_cols=286  Identities=17%  Similarity=0.191  Sum_probs=191.5

Q ss_pred             CCcEEEEcCcHHHHHHHHHHHHcCCCCCcEEEEcCCCCCC-------CC----CCCCcccccCCCCCCCCCCCCC-ccc-
Q 012165           51 NREFVIVGGGNAAGYAARTFVEHGMADGRLCIVSKEAYAP-------YE----RPALTKGYLFPLDKKPARLPGF-HTC-  117 (469)
Q Consensus        51 ~~~vvIIGgG~AGl~aA~~L~~~g~~~~~V~vie~~~~~~-------~~----~~~l~~~~~~~~~~~~~~~~~~-~~~-  117 (469)
                      ++||+|||||+||+++|..|++.|+ . +|+|||+++ .+       ..    .+.+.... ++........+.. ... 
T Consensus         4 ~~~vvIIGaG~aGl~aA~~l~~~g~-~-~v~lie~~~-~Gg~~~~~~~~~~~~~~~~~~~~-~g~~~~~~~~~~~~~~~~   79 (369)
T 3d1c_A            4 HHKVAIIGAGAAGIGMAITLKDFGI-T-DVIILEKGT-VGHSFKHWPKSTRTITPSFTSNG-FGMPDMNAISMDTSPAFT   79 (369)
T ss_dssp             EEEEEEECCSHHHHHHHHHHHHTTC-C-CEEEECSSS-TTHHHHTSCTTCBCSSCCCCCGG-GTCCCTTCSSTTCCHHHH
T ss_pred             cCcEEEECcCHHHHHHHHHHHHcCC-C-cEEEEecCC-CCCccccCcccccccCcchhccc-CCchhhhhcccccccccc
Confidence            5799999999999999999999886 2 799999986 21       10    01000000 0000000000000 000 


Q ss_pred             cCCC------CCCCCHhHHHHCCcEEEeCCcEEEEeCCC--cEEEeCCCeEEEeccEEeccCCCCCcCCCCCCCCcCcEE
Q 012165          118 VGSG------GERQTPEWYKEKGIEMIYQDPVTSIDIEK--QTLITNSGKLLKYGSLIVATGCTASRFPEKIGGYLPGVH  189 (469)
Q Consensus       118 ~~~~------~~~~~~~~~~~~~i~~~~~~~v~~id~~~--~~v~~~~g~~~~yd~lVlAtG~~~~~~~~~~g~~~~~v~  189 (469)
                      ....      .......++++.+++++.+++|+.+++++  ..|.+.++ ++.||+||+|||+.+.  |.+|+   ..+.
T Consensus        80 ~~~~~~~~~~~~~~l~~~~~~~gv~i~~~~~v~~i~~~~~~~~v~~~~g-~~~~d~vVlAtG~~~~--p~ip~---~~~~  153 (369)
T 3d1c_A           80 FNEEHISGETYAEYLQVVANHYELNIFENTVVTNISADDAYYTIATTTE-TYHADYIFVATGDYNF--PKKPF---KYGI  153 (369)
T ss_dssp             HCCSSCBHHHHHHHHHHHHHHTTCEEECSCCEEEEEECSSSEEEEESSC-CEEEEEEEECCCSTTS--BCCCS---SSCE
T ss_pred             ccccCCCHHHHHHHHHHHHHHcCCeEEeCCEEEEEEECCCeEEEEeCCC-EEEeCEEEECCCCCCc--cCCCC---Ccee
Confidence            0000      00011234467899999998999998763  46777776 5899999999999764  33343   1222


Q ss_pred             EecCHHHHHHHHHhhhcCCeEEEEcCChHHHHHHHHHHhCCCeEe-------e------------------eHHHHHHcC
Q 012165          190 YIRDVADADALISSLEKAKKVVVVGGGYIGMEVAAAAVGWKLDTT-------R------------------YEQLYQQNG  244 (469)
Q Consensus       190 ~~~~~~~~~~~~~~~~~~~~vvVvG~G~~g~e~A~~l~~~g~~v~-------~------------------~~~~l~~~g  244 (469)
                      +...+.+..     ..++++|+|||+|.+|+|+|..|.+.+.+|+       .                  +.+.+++.|
T Consensus       154 ~~~~~~~~~-----~~~~~~vvVvG~G~~g~e~a~~l~~~g~~V~lv~~~~~~~~~~~d~~~~~~~~~~~~l~~~l~~~g  228 (369)
T 3d1c_A          154 HYSEIEDFD-----NFNKGQYVVIGGNESGFDAAYQLAKNGSDIALYTSTTGLNDPDADPSVRLSPYTRQRLGNVIKQGA  228 (369)
T ss_dssp             EGGGCSCGG-----GSCSSEEEEECCSHHHHHHHHHHHHTTCEEEEECC----------CTTSCCHHHHHHHHHHHHTTC
T ss_pred             chhhcCChh-----hcCCCEEEEECCCcCHHHHHHHHHhcCCeEEEEecCCCCCCCCCCCCccCCHHHHHHHHHHHhhCC
Confidence            222111111     1256899999999999999999999999887       1                  123345565


Q ss_pred             -cEEEcCCeEEEEEeCCCCcEEEEEcCCCCEEe-CCEEEEccCCccCCchhhhcCCcccCCCEEeCCC-CCCCCCceEEe
Q 012165          245 -VKFVKGASIKNLEAGSDGRVAAVKLEDGSTID-ADTIVIGIGAKPTVSPFERVGLNSSVGGIQVDGQ-FRTRMPGIFAI  321 (469)
Q Consensus       245 -V~~~~~~~v~~i~~~~~~~v~~v~~~~g~~i~-~D~vi~a~G~~p~~~~~~~~gl~~~~g~i~Vd~~-~~t~~~~Vfa~  321 (469)
                       |++++++.|.+++.. ++. ..+.+.+|+++. +|.||+++|++|+++++.+.+++.++|++.||++ ++|++|+|||+
T Consensus       229 ~v~~~~~~~v~~i~~~-~~~-~~v~~~~g~~~~~~d~vi~a~G~~~~~~~~~~~~~~~~~g~i~v~~~~~~t~~~~v~a~  306 (369)
T 3d1c_A          229 RIEMNVHYTVKDIDFN-NGQ-YHISFDSGQSVHTPHEPILATGFDATKNPIVQQLFVTTNQDIKLTTHDESTRYPNIFMI  306 (369)
T ss_dssp             CEEEECSCCEEEEEEE-TTE-EEEEESSSCCEEESSCCEECCCBCGGGSHHHHHHSCCTTSCCCBCTTSBBSSSTTEEEC
T ss_pred             cEEEecCcEEEEEEec-CCc-eEEEecCCeEeccCCceEEeeccCCccchhhhhhccCCCCCEEechhhcccCCCCeEEe
Confidence             999999999999743 232 357788997765 6999999999999877766556544677999975 67899999999


Q ss_pred             ccccccCCccCCcccccchHHHHHHHHHHHHHHHhcCC
Q 012165          322 GDVAAFPLKMYDRTARVEHVDHARQSAQHCIKALLSAQ  359 (469)
Q Consensus       322 GD~a~~~~~~~~~~~~~~~~~~A~~~a~~~a~~i~~~~  359 (469)
                      |||+..+....      ..+..+..||+.+|++|.+..
T Consensus       307 GD~~~~~~~~~------~~~~~~~~~a~~~a~~l~~~~  338 (369)
T 3d1c_A          307 GATVENDNAKL------CYIYKFRARFAVLAHLLTQRE  338 (369)
T ss_dssp             STTCCCSSCCC------CSHHHHGGGHHHHHHHHHHHT
T ss_pred             ccccccCCeeE------EEEehhhHHHHHHHHHHhccc
Confidence            99998765432      134457788999999998643

>1y56_A Hypothetical protein PH1363; dehydrogenase, protein-protein complex, oxidoreductase; HET: FAD FMN ATP CXS; 2.86A {Pyrococcus horikoshii}

Probab=99.97  E-value=9.5e-32  Score=275.23  Aligned_cols=253  Identities=16%  Similarity=0.169  Sum_probs=191.3

Q ss_pred             CCcEEEEcCcHHHHHHHHHHHHcCCCCCcEEEEcCCCCCCCCCCCCcccccCCCCCCCCCCCCCccccCCCCCCCCHhHH
Q 012165           51 NREFVIVGGGNAAGYAARTFVEHGMADGRLCIVSKEAYAPYERPALTKGYLFPLDKKPARLPGFHTCVGSGGERQTPEWY  130 (469)
Q Consensus        51 ~~~vvIIGgG~AGl~aA~~L~~~g~~~~~V~vie~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  130 (469)
                      ++||+|||||+||+++|.+|++. +   +|+|+|+++..++.....+.... .       ++. .       ......++
T Consensus       108 ~~dVvIIGgG~aGl~aA~~L~~~-~---~V~vie~~~~~GG~~~~~~~~~~-g-------~~~-~-------~~~~~~~l  167 (493)
T 1y56_A          108 VVDVAIIGGGPAGIGAALELQQY-L---TVALIEERGWLGGDMWLKGIKQE-G-------FNK-D-------SRKVVEEL  167 (493)
T ss_dssp             EESCCEECCSHHHHHHHHHHTTT-C---CEEEECTTSSSSCSGGGTCSEET-T-------TTE-E-------HHHHHHHH
T ss_pred             cCCEEEECccHHHHHHHHHHHhc-C---CEEEEeCCCCCCCeeeccccccC-C-------CCC-C-------HHHHHHHH
Confidence            46999999999999999999998 5   89999999887665332221110 0       000 0       00111121


Q ss_pred             H---HCCcEEEeCCcEEEEeCCCcEEEe---CCCe--EEEeccEEeccCCCCCcCCCCCCCCcCcEEEecCHHHHHHHHH
Q 012165          131 K---EKGIEMIYQDPVTSIDIEKQTLIT---NSGK--LLKYGSLIVATGCTASRFPEKIGGYLPGVHYIRDVADADALIS  202 (469)
Q Consensus       131 ~---~~~i~~~~~~~v~~id~~~~~v~~---~~g~--~~~yd~lVlAtG~~~~~~~~~~g~~~~~v~~~~~~~~~~~~~~  202 (469)
                      .   +.+++++.+++|.+++.+++.+.+   ++++  .+.||+||||||+.|+ .|.++|.+.+++++..   +...+.+
T Consensus       168 ~~~l~~~v~~~~~~~v~~i~~~~~~~~~~~~~~~~~~~~~~d~lvlAtGa~~~-~~~~~g~~~~gv~~~~---~~~~~~~  243 (493)
T 1y56_A          168 VGKLNENTKIYLETSALGVFDKGEYFLVPVVRGDKLIEILAKRVVLATGAIDS-TMLFENNDMPGVFRRD---FALEVMN  243 (493)
T ss_dssp             HHTCCTTEEEETTEEECCCEECSSSEEEEEEETTEEEEEEESCEEECCCEEEC-CCCCTTTTSTTEEEHH---HHHHHHH
T ss_pred             HHHHhcCCEEEcCCEEEEEEcCCcEEEEEEecCCeEEEEECCEEEECCCCCcc-CCCCCCCCCCCEEEcH---HHHHHHH
Confidence            1   458999888888888877653322   4454  6899999999999987 4567888888887653   3344433


Q ss_pred             h--hhcCCeEEEEcCChHHHHHHHHHHhCCCeEeeeHHHHHHcCcEEEcCCeEEEEEeCCCCcEEEEEcCCCCEEeCCEE
Q 012165          203 S--LEKAKKVVVVGGGYIGMEVAAAAVGWKLDTTRYEQLYQQNGVKFVKGASIKNLEAGSDGRVAAVKLEDGSTIDADTI  280 (469)
Q Consensus       203 ~--~~~~~~vvVvG~G~~g~e~A~~l~~~g~~v~~~~~~l~~~gV~~~~~~~v~~i~~~~~~~v~~v~~~~g~~i~~D~v  280 (469)
                      .  ..++++++|+|+|++|+|                +.+++.||++++++.+.+++.+  +.+..+.+++|+++++|.|
T Consensus       244 ~~~~~~~~~vvViGgG~~gle----------------~~l~~~GV~v~~~~~v~~i~~~--~~v~~v~~~~g~~i~aD~V  305 (493)
T 1y56_A          244 VWEVAPGRKVAVTGSKADEVI----------------QELERWGIDYVHIPNVKRVEGN--EKVERVIDMNNHEYKVDAL  305 (493)
T ss_dssp             TSCBCSCSEEEEESTTHHHHH----------------HHHHHHTCEEEECSSEEEEECS--SSCCEEEETTCCEEECSEE
T ss_pred             hcccCCCCEEEEECCCHHHHH----------------HHHHhCCcEEEeCCeeEEEecC--CceEEEEeCCCeEEEeCEE
Confidence            2  235689999999999998                4677889999999999999843  3455677889999999999


Q ss_pred             EEccCCccCCchhhhcCCcc--c-CCCEE-eCCCCCCCCCceEEeccccccCCccCCcccccchHHHHHHHHHHHHHHHh
Q 012165          281 VIGIGAKPTVSPFERVGLNS--S-VGGIQ-VDGQFRTRMPGIFAIGDVAAFPLKMYDRTARVEHVDHARQSAQHCIKALL  356 (469)
Q Consensus       281 i~a~G~~p~~~~~~~~gl~~--~-~g~i~-Vd~~~~t~~~~Vfa~GD~a~~~~~~~~~~~~~~~~~~A~~~a~~~a~~i~  356 (469)
                      |+++|++|++++++.+|++.  + +|++. ||++++ +.|+|||+|||+..+           .+..|..+|+.+|.+|.
T Consensus       306 v~a~G~~p~~~l~~~~g~~~~~~~~g~i~~vd~~~~-s~~~vya~GD~~~~~-----------~~~~A~~~g~~aa~~i~  373 (493)
T 1y56_A          306 IFADGRRPDINPITQAGGKLRFRRGYYSPVLDEYHR-IKDGIYVAGSAVSIK-----------PHYANYLEGKLVGAYIL  373 (493)
T ss_dssp             EECCCEEECCHHHHHTTCCEEEETTEEEECCCTTSE-EETTEEECSTTTCCC-----------CHHHHHHHHHHHHHHHH
T ss_pred             EECCCcCcCchHHHhcCCCccccCCceeeccccccC-cCCCEEEEeccCCcc-----------CHHHHHHHHHHHHHHHH
Confidence            99999999999999988864  2 56676 899999 999999999999742           45568999999999997


Q ss_pred             c
Q 012165          357 S  357 (469)
Q Consensus       357 ~  357 (469)
                      +
T Consensus       374 ~  374 (493)
T 1y56_A          374 K  374 (493)
T ss_dssp             H
T ss_pred             H
Confidence            5

>1o94_A Tmadh, trimethylamine dehydrogenase; electron transport, protein complex; HET: FMN ADP AMP; 2.0A {Methylophilus methylotrophus} SCOP: c.1.4.1 c.3.1.1 c.4.1.1 PDB: 1djn_A* 1o95_A* 2tmd_A* 1djq_A*

Probab=99.97  E-value=5.2e-32  Score=289.16  Aligned_cols=304  Identities=15%  Similarity=0.157  Sum_probs=200.0

Q ss_pred             cCCccccccccc-c--cccccCCCCCCcEEEEcCcHHHHHHHHHHHHcCCCCCcEEEEcCCCCCCCCCCCCcccccCCCC
Q 012165           29 HSSAKNFQRRGF-V--VAYSSFANENREFVIVGGGNAAGYAARTFVEHGMADGRLCIVSKEAYAPYERPALTKGYLFPLD  105 (469)
Q Consensus        29 ~~~~~~~~~~~~-~--~~~~~~~~~~~~vvIIGgG~AGl~aA~~L~~~g~~~~~V~vie~~~~~~~~~~~l~~~~~~~~~  105 (469)
                      |.+|+....+.. .  ....+....++||+|||||+||++||..|++.|+   +|+|+|+++.....   +..  .    
T Consensus       364 C~~n~~~g~e~~~~~~~~~~~~~~~~~~VvIIGgGpAGl~aA~~L~~~G~---~Vtlie~~~~~GG~---~~~--~----  431 (729)
T 1o94_A          364 CTQNATAGEEYRRGWHPEKFRQTKNKDSVLIVGAGPSGSEAARVLMESGY---TVHLTDTAEKIGGH---LNQ--V----  431 (729)
T ss_dssp             CSSCTTTTTHHHHCCCTTCCCCCSSCCEEEEECCSHHHHHHHHHHHHTTC---EEEEECSSSSTTTT---HHH--H----
T ss_pred             eccCccccccccccccccccccccCCceEEEECCCHHHHHHHHHHHHCCC---eEEEEeCCCCcCCe---eee--c----
Confidence            888886543321 1  1112234557899999999999999999999987   79999998765322   000  0    


Q ss_pred             CCCCCCCCCccccCCCCCCCCHhHHHHCCcEEE--eCCcEEEEeCCCcEEEeCCCeEEEeccEEeccCCCCC-------c
Q 012165          106 KKPARLPGFHTCVGSGGERQTPEWYKEKGIEMI--YQDPVTSIDIEKQTLITNSGKLLKYGSLIVATGCTAS-------R  176 (469)
Q Consensus       106 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~--~~~~v~~id~~~~~v~~~~g~~~~yd~lVlAtG~~~~-------~  176 (469)
                         ..+|++..      .....+++.. .++.+  .+..+..++. ++.++++++..+.||+||||||+.++       .
T Consensus       432 ---~~~pg~~~------~~~~~~~~~~-~i~~~~~~~~~~v~i~~-~~~v~~~~~~~~~~d~vviAtG~~~~~~~~~~p~  500 (729)
T 1o94_A          432 ---AALPGLGE------WSYHRDYRET-QITKLLKKNKESQLALG-QKPMTADDVLQYGADKVIIATGARWNTDGTNCLT  500 (729)
T ss_dssp             ---TTSTTCGG------GHHHHHHHHH-HHHHHHHHSTTCEEECS-CCCCCHHHHHTSCCSEEEECCCEEECSSCCCTTT
T ss_pred             ---ccCCChHH------HHHHHHHHHH-HHHHhhcccCCceEEEe-CeEEehhhccccCCCEEEEcCCCCcccccccCcc
Confidence               01111100      0011112111 11100  0112222322 23444555556899999999999842       2


Q ss_pred             CCCCCCCC--cCcEEEecCHHHHHHHHHhhhcCCeEEEEc--CChHHHHHHHHHHhCCCeEe------------------
Q 012165          177 FPEKIGGY--LPGVHYIRDVADADALISSLEKAKKVVVVG--GGYIGMEVAAAAVGWKLDTT------------------  234 (469)
Q Consensus       177 ~~~~~g~~--~~~v~~~~~~~~~~~~~~~~~~~~~vvVvG--~G~~g~e~A~~l~~~g~~v~------------------  234 (469)
                      .|.++|.+  .+++++.   .+.  +......+++|+|||  +|.+|+|+|..|+++|.+|+                  
T Consensus       501 ~~~ipG~~~~~~~v~~~---~~~--l~~~~~~gk~VvVIG~GgG~~g~e~A~~l~~~G~~Vtlv~~~~l~~~~~~~~~~~  575 (729)
T 1o94_A          501 HDPIPGADASLPDQLTP---EQV--MDGKKKIGKRVVILNADTYFMAPSLAEKLATAGHEVTIVSGVHLANYMHFTLEYP  575 (729)
T ss_dssp             SSCCTTCCTTSTTEECH---HHH--HHCCSCCCSEEEEEECCCSSHHHHHHHHHHHTTCEEEEEESSCTTHHHHHTTCHH
T ss_pred             CCCCCCccccCCCEEEH---HHH--hcCCCCCCCeEEEEcCCCCchHHHHHHHHHHcCCEEEEEecccccccccccccHH
Confidence            45566655  4566543   222  222334678999999  99999999999999999887                  


Q ss_pred             eeHHHHHHcCcEEEcCCeEEEEEeCCCCcEEEEEcCCC-CE------------------EeCCEEEEccCCccCCchhhh
Q 012165          235 RYEQLYQQNGVKFVKGASIKNLEAGSDGRVAAVKLEDG-ST------------------IDADTIVIGIGAKPTVSPFER  295 (469)
Q Consensus       235 ~~~~~l~~~gV~~~~~~~v~~i~~~~~~~v~~v~~~~g-~~------------------i~~D~vi~a~G~~p~~~~~~~  295 (469)
                      .+.+.+++.||++++++.+++++.  ++......+.++ ++                  +++|.||+++|.+|+++++++
T Consensus       576 ~~~~~l~~~GV~i~~~~~v~~i~~--~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~aD~Vv~a~G~~p~~~l~~~  653 (729)
T 1o94_A          576 NMMRRLHELHVEELGDHFCSRIEP--GRMEIYNIWGDGSKRTYRGPGVSPRDANTSHRWIEFDSLVLVTGRHSECTLWNE  653 (729)
T ss_dssp             HHHHHHHHTTCEEECSEEEEEEET--TEEEEEETTCSCSCCCCCCTTSCSSCCCCCCEEEECSEEEEESCEEECCHHHHH
T ss_pred             HHHHHHHhCCCEEEcCcEEEEEEC--CeEEEEEecCCceEEecccccccccccCCcceeeeCCEEEECCCCCCChHHHHH
Confidence            123556789999999999999973  222111122333 33                  999999999999999988775


Q ss_pred             cCCcccCCCEEeCCCCCCCCCceEEeccccccCCccCCcccccchHHHHHHHHHHHHHHHhcCCCCCCCCCCceeeeccc
Q 012165          296 VGLNSSVGGIQVDGQFRTRMPGIFAIGDVAAFPLKMYDRTARVEHVDHARQSAQHCIKALLSAQTHTYDYLPYFYSRVFE  375 (469)
Q Consensus       296 ~gl~~~~g~i~Vd~~~~t~~~~Vfa~GD~a~~~~~~~~~~~~~~~~~~A~~~a~~~a~~i~~~~~~~~~~~p~~~~~~~~  375 (469)
                      ++.       .+|++++|++|+|||+|||+...           .+..|..+|+.+|.+|.+.  ..+..+|| |+++|+
T Consensus       654 l~~-------~vd~~~~t~~~~VyAiGD~~~~~-----------~~~~A~~~G~~aA~~i~~~--l~~~~~p~-~~~~~~  712 (729)
T 1o94_A          654 LKA-------RESEWAENDIKGIYLIGDAEAPR-----------LIADATFTGHRVAREIEEA--NPQIAIPY-KRETIA  712 (729)
T ss_dssp             HHH-------TGGGTGGGTCCEEEECGGGTSCC-----------CHHHHHHHHHHHHHTTTSS--CTTSCCCC-CCCCCC
T ss_pred             Hhh-------hcccccccCCCCeEEEeCccchh-----------hHHHHHHHHHHHHHHhhhh--cccCCCCe-eeeccc
Confidence            421       26788999999999999998621           4567999999999999753  45677888 888887


Q ss_pred             ccCCCcceeeEEeec
Q 012165          376 YEGSPRKVWWQFFGD  390 (469)
Q Consensus       376 ~~g~~~~~~~~~~G~  390 (469)
                      +.       +|++|.
T Consensus       713 ~~-------~~~~~~  720 (729)
T 1o94_A          713 WG-------TPHMPG  720 (729)
T ss_dssp             TT-------CCSSTT
T ss_pred             Cc-------ccccCC
Confidence            64       566654

>1cjc_A Protein (adrenodoxin reductase); flavoenzyme, MAD analysis, electron transferase, oxidoreductase; HET: FAD; 1.70A {Bos taurus} SCOP: c.3.1.1 c.4.1.1 PDB: 1e1k_A* 1e1l_A* 1e1m_A* 1e1n_A* 1e6e_A*

Probab=99.97  E-value=5.8e-31  Score=266.48  Aligned_cols=272  Identities=16%  Similarity=0.173  Sum_probs=187.1

Q ss_pred             CCCcEEEEcCcHHHHHHHHHHHHcCCCCCcEEEEcCCCCCCCCCCCCcccccCCCCCCCCCCCCCccccCCCCCCCCHhH
Q 012165           50 ENREFVIVGGGNAAGYAARTFVEHGMADGRLCIVSKEAYAPYERPALTKGYLFPLDKKPARLPGFHTCVGSGGERQTPEW  129 (469)
Q Consensus        50 ~~~~vvIIGgG~AGl~aA~~L~~~g~~~~~V~vie~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  129 (469)
                      .+++|+|||||+||+++|..|++.+. +.+|+|||+++.+ |..  +... ..+.......+           .....++
T Consensus         5 ~~~~vvIIG~G~aGl~aA~~l~~~g~-~~~V~vie~~~~~-gg~--~~~g-~~p~~~~~~~~-----------~~~~~~~   68 (460)
T 1cjc_A            5 QTPQICVVGSGPAGFYTAQHLLKHHS-RAHVDIYEKQLVP-FGL--VRFG-VAPDHPEVKNV-----------INTFTQT   68 (460)
T ss_dssp             -CCEEEEECCSHHHHHHHHHHHHHCS-SCEEEEECSSSSS-CTH--HHHT-SCTTCGGGGGH-----------HHHHHHH
T ss_pred             CCceEEEECcCHHHHHHHHHHHhcCC-CCCEEEEeCCCcC-Cce--eecc-cCCCCccHHHH-----------HHHHHHH
Confidence            35799999999999999999999983 4589999998765 321  1000 00100000000           1123456


Q ss_pred             HHHCCcEEEeCCcEEEEeCCCcEEEeCCCeEEEeccEEeccCCCCCcCCCCCCCCcCcEEEecCHHHHHH----HHHh--
Q 012165          130 YKEKGIEMIYQDPVTSIDIEKQTLITNSGKLLKYGSLIVATGCTASRFPEKIGGYLPGVHYIRDVADADA----LISS--  203 (469)
Q Consensus       130 ~~~~~i~~~~~~~v~~id~~~~~v~~~~g~~~~yd~lVlAtG~~~~~~~~~~g~~~~~v~~~~~~~~~~~----~~~~--  203 (469)
                      +++.+++++.++.+      .+.|++++. .+.||+||||||+.+...|.++|.+.+++++.+++.....    ....  
T Consensus        69 ~~~~gv~~~~~~~v------~~~V~~~~~-~~~~d~lVlAtGs~~~~~~~ipG~~~~gv~~~~~~~~~~~~~~d~~~~~~  141 (460)
T 1cjc_A           69 ARSDRCAFYGNVEV------GRDVTVQEL-QDAYHAVVLSYGAEDHQALDIPGEELPGVFSARAFVGWYNGLPENRELAP  141 (460)
T ss_dssp             HTSTTEEEEBSCCB------TTTBCHHHH-HHHSSEEEECCCCCEECCCCCTTTTSTTEEEHHHHHHHHTTCGGGTTCCC
T ss_pred             HHhCCcEEEeeeEE------eeEEEeccc-eEEcCEEEEecCcCCCCCCCCCCCCCCcEEEHHHHHHHhhcCcccccccc
Confidence            67789999988655      233444443 3689999999999964456788877888887654321100    0000  


Q ss_pred             hhcCCeEEEEcCChHHHHHHHHHH--------------------hCCC-eEeee--------------------------
Q 012165          204 LEKAKKVVVVGGGYIGMEVAAAAV--------------------GWKL-DTTRY--------------------------  236 (469)
Q Consensus       204 ~~~~~~vvVvG~G~~g~e~A~~l~--------------------~~g~-~v~~~--------------------------  236 (469)
                      ...+++++|||+|++|+|+|..|+                    +.+. +|+.+                          
T Consensus       142 ~~~~~~vvVIGgG~~g~e~A~~L~~~~~~l~~tdi~~~a~~~l~~~g~~~V~lv~r~~~~~~~ft~~el~~l~~lp~~~~  221 (460)
T 1cjc_A          142 DLSCDTAVILGQGNVALDVARILLTPPDHLEKTDITEAALGALRQSRVKTVWIVGRRGPLQVAFTIKELREMIQLPGTRP  221 (460)
T ss_dssp             CTTSSEEEEESCSHHHHHHHHHHHSCGGGGTTSCCCHHHHHHHHTCCCCEEEEECSSCGGGCCCCHHHHHHHHTCTTEEE
T ss_pred             CCCCCEEEEECCCHHHHHHHHHHhhchhhhccccccHHHHHHHhhCCCcEEEEEEcCChHhhccCHHHHHHhhcCCCcee
Confidence            114789999999999999999998                    5666 56511                          


Q ss_pred             ------------------------HH----HHHH--------------cCcEEEcCCeEEEEEeCCCC-cEEEEEcC---
Q 012165          237 ------------------------EQ----LYQQ--------------NGVKFVKGASIKNLEAGSDG-RVAAVKLE---  270 (469)
Q Consensus       237 ------------------------~~----~l~~--------------~gV~~~~~~~v~~i~~~~~~-~v~~v~~~---  270 (469)
                                              .+    .+++              .||+++++..+.+|..++++ ++.+|++.   
T Consensus       222 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~gv~~~~~~~~~~i~~~~~~~~v~~v~~~~~~  301 (460)
T 1cjc_A          222 MLDPADFLGLQDRIKEAARPRKRLMELLLRTATEKPGVEEAARRASASRAWGLRFFRSPQQVLPSPDGRRAAGIRLAVTR  301 (460)
T ss_dssp             ECCGGGGTTHHHHTTTSCHHHHHHHHHHHHHHHSCCCHHHHHHHHTCSEEEEEECSEEEEEEEECTTSSSEEEEEEEEEE
T ss_pred             EechhhhcchhhhhhhccHHHHHHHHHHHHHHHhccccccccCCCCCCceEEEECCCChheEEcCCCCceEEEEEEEEEE
Confidence                                    01    1223              78999999999999864335 56555553   


Q ss_pred             ------------CC--CEEeCCEEEEccCCccCCchhhhcCC-ccc-CCCEEeCCCCCCC-CCceEEeccccccCCccCC
Q 012165          271 ------------DG--STIDADTIVIGIGAKPTVSPFERVGL-NSS-VGGIQVDGQFRTR-MPGIFAIGDVAAFPLKMYD  333 (469)
Q Consensus       271 ------------~g--~~i~~D~vi~a~G~~p~~~~~~~~gl-~~~-~g~i~Vd~~~~t~-~~~Vfa~GD~a~~~~~~~~  333 (469)
                                  +|  +++++|+||+++|++|++ +   .|+ +.+ +++|.||+++||+ +|+|||+|||+..+..   
T Consensus       302 l~~~~~~~~~~~~g~~~~i~~d~Vi~a~G~~p~~-l---~gl~~~d~~g~i~vn~~~rt~~~p~vya~Gd~~~g~~~---  374 (460)
T 1cjc_A          302 LEGIGEATRAVPTGDVEDLPCGLVLSSIGYKSRP-I---DPSVPFDPKLGVVPNMEGRVVDVPGLYCSGWVKRGPTG---  374 (460)
T ss_dssp             EESSGGGCEEEEEEEEEEEECSEEEECCCEECCC-C---CTTSCCBTTTTBCCEETTEETTCTTEEECTHHHHCTTC---
T ss_pred             EccccCCCcccCCCceEEEEcCEEEECCCCCCCC-C---CCCcccccCCCeeECCCCcCcCCCCEEEEEeCCcCCCc---
Confidence                        34  579999999999999996 3   566 555 5889999999998 7999999999975432   


Q ss_pred             cccccchHHHHHHHHHHHHHHHhc
Q 012165          334 RTARVEHVDHARQSAQHCIKALLS  357 (469)
Q Consensus       334 ~~~~~~~~~~A~~~a~~~a~~i~~  357 (469)
                            .+..|+.+|..+|.+|++
T Consensus       375 ------~i~~a~~~g~~aa~~i~~  392 (460)
T 1cjc_A          375 ------VITTTMTDSFLTGQILLQ  392 (460)
T ss_dssp             ------CHHHHHHHHHHHHHHHHH
T ss_pred             ------cHHHHHHHHHHHHHHHHH
Confidence                  244577777777777764

>2gag_A Heterotetrameric sarcosine oxidase alpha-subunit; flavoenzyme, electron transfer, folate-ME enzyme, oxidoreductase; HET: NAD FAD FMN; 1.85A {Stenotrophomonas maltophilia} PDB: 2gah_A* 1x31_A* 1vrq_A* 3ad7_A* 3ad8_A* 3ad9_A* 3ada_A*

Probab=99.97  E-value=6.1e-30  Score=280.34  Aligned_cols=271  Identities=15%  Similarity=0.165  Sum_probs=197.8

Q ss_pred             CCcEEEEcCcHHHHHHHHHHHHcCCCCCcEEEEcCCCCCCCCCCCCcccccCCCCCCCCCCCCCccccCCCCCCCCHhHH
Q 012165           51 NREFVIVGGGNAAGYAARTFVEHGMADGRLCIVSKEAYAPYERPALTKGYLFPLDKKPARLPGFHTCVGSGGERQTPEWY  130 (469)
Q Consensus        51 ~~~vvIIGgG~AGl~aA~~L~~~g~~~~~V~vie~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  130 (469)
                      .+||||||||+||++||.+|++.|+   +|+|||+++.++..-...++.+          +++...   .++.....+.+
T Consensus       128 ~~dVvVIGaGpAGl~AA~~la~~G~---~V~lie~~~~~GG~~~~~~k~~----------i~~~~~---~~~~~~~~~~l  191 (965)
T 2gag_A          128 HTDVLVVGAGPAGLAAAREASRSGA---RVMLLDERAEAGGTLLDTAGEQ----------IDGMDS---SAWIEQVTSEL  191 (965)
T ss_dssp             EEEEEEECCSHHHHHHHHHHHHTTC---CEEEECSSSSSSGGGGGSSCCE----------ETTEEH---HHHHHHHHHHH
T ss_pred             CCCEEEECCCHHHHHHHHHHHhCCC---cEEEEeCCCCCCceeccCCccc----------cCCCCH---HHHHHHHHHHH
Confidence            5789999999999999999999987   7999999876532100000100          110000   00001112334


Q ss_pred             HH-CCcEEEeCCcEEEEeCCCcEEEe-----------------CCCeEEEeccEEeccCCCCCcCCCCCCCCcCcEEEec
Q 012165          131 KE-KGIEMIYQDPVTSIDIEKQTLIT-----------------NSGKLLKYGSLIVATGCTASRFPEKIGGYLPGVHYIR  192 (469)
Q Consensus       131 ~~-~~i~~~~~~~v~~id~~~~~v~~-----------------~~g~~~~yd~lVlAtG~~~~~~~~~~g~~~~~v~~~~  192 (469)
                      .+ .+++++.+++|..++..+....+                 .++.++.||+||||||+.|+ +|+++|.+.+++++..
T Consensus       192 ~~~~~v~~~~~~~V~~i~~~~~~~~v~~~~~~~~v~~~~~~~~~~~~~i~~d~lVlATGs~p~-~~~ipG~~~~gv~~~~  270 (965)
T 2gag_A          192 AEAEETTHLQRTTVFGSYDANYLIAAQRRTVHLDGPSGPGVSRERIWHIRAKQVVLATGAHER-PIVFENNDRPGIMLAG  270 (965)
T ss_dssp             HHSTTEEEESSEEEEEEETTTEEEEEEECSTTCSSCCCTTCCSEEEEEEEEEEEEECCCEEEC-CCCCBTCCSTTEEEHH
T ss_pred             hhcCCcEEEeCCEEEeeecCCceeeeEeecccccccccccCCCCceEEEECCEEEECCCCccC-CCCCCCCCCCCEEEhH
Confidence            44 48999998899998875532211                 11236899999999999986 4567888888988764


Q ss_pred             CHHHHHHHHHh--hhcCCeEEEEcCChHHHHHHHHHHhCCCeEeee---------HHHHHHcCcEEEcCCeEEEEEeCCC
Q 012165          193 DVADADALISS--LEKAKKVVVVGGGYIGMEVAAAAVGWKLDTTRY---------EQLYQQNGVKFVKGASIKNLEAGSD  261 (469)
Q Consensus       193 ~~~~~~~~~~~--~~~~~~vvVvG~G~~g~e~A~~l~~~g~~v~~~---------~~~l~~~gV~~~~~~~v~~i~~~~~  261 (469)
                      +.   +.+...  ..++++++|||+|++|+|+|..|.++|.+++.+         .+.+++.||++++++.+++++.+++
T Consensus       271 ~~---~~~l~~~~~~~gk~vvViGgG~~g~E~A~~L~~~G~~Vtvv~~~~~~~~~~~~l~~~GV~v~~~~~v~~i~~~~~  347 (965)
T 2gag_A          271 AV---RSYLNRYGVRAGARIAVATTNDSAYELVRELAATGGVVAVIDARSSISAAAAQAVADGVQVISGSVVVDTEADEN  347 (965)
T ss_dssp             HH---HHHHHTTCEESCSSEEEEESSTTHHHHHHHHGGGTCCSEEEESCSSCCHHHHHHHHTTCCEEETEEEEEEEECTT
T ss_pred             HH---HHHHHhcCCCCCCeEEEEcCCHHHHHHHHHHHHcCCcEEEEECCCccchhHHHHHhCCeEEEeCCEeEEEeccCC
Confidence            33   222221  235689999999999999999999999988711         4678899999999999999985324


Q ss_pred             CcEEEEEcCC-------C--CEEeCCEEEEccCCccCCchhhhcCCcccCCCEEeCCCCC-----CCCCceEEecccccc
Q 012165          262 GRVAAVKLED-------G--STIDADTIVIGIGAKPTVSPFERVGLNSSVGGIQVDGQFR-----TRMPGIFAIGDVAAF  327 (469)
Q Consensus       262 ~~v~~v~~~~-------g--~~i~~D~vi~a~G~~p~~~~~~~~gl~~~~g~i~Vd~~~~-----t~~~~Vfa~GD~a~~  327 (469)
                      +++..|++.+       |  +++++|.|++++|++||+++++..     .++|.+|++++     |+.|+|||+|||+..
T Consensus       348 ~~v~~v~~~~~~~~~~~G~~~~i~~D~Vv~a~G~~P~~~l~~~~-----~g~i~vd~~~~~~v~~ts~p~IyAaGD~a~~  422 (965)
T 2gag_A          348 GELSAIVVAELDEARELGGTQRFEADVLAVAGGFNPVVHLHSQR-----QGKLDWDTTIHAFVPADAVANQHLAGAMTGR  422 (965)
T ss_dssp             SCEEEEEEEEECTTCCEEEEEEEECSEEEEECCEEECCHHHHHT-----TCCEEEETTTTEEEECSCCTTEEECGGGGTC
T ss_pred             CCEEEEEEEeccccCCCCceEEEEcCEEEECCCcCcChHHHHhC-----CCcEEEcCcccccccCCCCCCEEEEEecCCc
Confidence            5555676664       5  679999999999999999887654     36899999887     899999999999975


Q ss_pred             CCccCCcccccchHHHHHHHHHHHHHHHhc
Q 012165          328 PLKMYDRTARVEHVDHARQSAQHCIKALLS  357 (469)
Q Consensus       328 ~~~~~~~~~~~~~~~~A~~~a~~~a~~i~~  357 (469)
                      +.           ...|..+|+.+|.+|++
T Consensus       423 ~~-----------l~~A~~~G~~aA~~i~~  441 (965)
T 2gag_A          423 LD-----------TASALSTGAATGAAAAT  441 (965)
T ss_dssp             CS-----------HHHHHHHHHHHHHHHHH
T ss_pred             hh-----------HHHHHHHHHHHHHHHHH
Confidence            42           22688999999999865

>2xve_A Flavin-containing monooxygenase; oxidoreductase; HET: FAD; 1.99A {Methylophaga aminisulfidivorans} PDB: 2xvf_A* 2xvh_A* 2xvi_A* 2xvj_A* 2xlt_A* 2vqb_A* 2vq7_A* 2xlu_A* 2xlp_A* 2xls_A* 2xlr_A*

Probab=99.96  E-value=1.6e-29  Score=256.69  Aligned_cols=283  Identities=15%  Similarity=0.152  Sum_probs=187.5

Q ss_pred             CcEEEEcCcHHHHHHHHHHHH---cCCCCCcEEEEcCCCCCC----CCC-CC-----------CcccccCCCCCCCCCCC
Q 012165           52 REFVIVGGGNAAGYAARTFVE---HGMADGRLCIVSKEAYAP----YER-PA-----------LTKGYLFPLDKKPARLP  112 (469)
Q Consensus        52 ~~vvIIGgG~AGl~aA~~L~~---~g~~~~~V~vie~~~~~~----~~~-~~-----------l~~~~~~~~~~~~~~~~  112 (469)
                      +||+|||||+||+++|..|++   .|....+|+|+|+++..+    |.. +.           +...+..........++
T Consensus         3 ~~V~IIGaG~aGl~aA~~L~~~~~~G~~~~~V~v~E~~~~~GG~w~~~~~~g~~~~g~~~~~~~y~~l~~~~~~~~~~~~   82 (464)
T 2xve_A            3 TRIAILGAGPSGMAQLRAFQSAQEKGAEIPELVCFEKQADWGGQWNYTWRTGLDENGEPVHSSMYRYLWSNGPKECLEFA   82 (464)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHHHHTTCCCCEEEEECSSSSSCGGGSCCSCCSBCTTSSBCCCCCCTTCBCSSCGGGTCBT
T ss_pred             CcEEEECccHHHHHHHHHHHhhhhcCCCCCcEEEEEcCCCCCCEeecCCCCCccccCCCCcCccccchhhcCChhhcccC
Confidence            699999999999999999999   887212399999986543    110 00           00000000000000111


Q ss_pred             CCcccc------C-----CCCCCCCHhHHHHCCcE--EEeCCcEEEEeCCCc----EEEeCC---C--eEEEeccEEecc
Q 012165          113 GFHTCV------G-----SGGERQTPEWYKEKGIE--MIYQDPVTSIDIEKQ----TLITNS---G--KLLKYGSLIVAT  170 (469)
Q Consensus       113 ~~~~~~------~-----~~~~~~~~~~~~~~~i~--~~~~~~v~~id~~~~----~v~~~~---g--~~~~yd~lVlAt  170 (469)
                      ++....      .     ........+++++.+++  ++++++|+.++....    +|++.+   |  .++.||+||+||
T Consensus        83 ~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~gv~~~i~~~~~V~~v~~~~~~~~~~V~~~~~~~g~~~~~~~d~VVvAt  162 (464)
T 2xve_A           83 DYTFDEHFGKPIASYPPREVLWDYIKGRVEKAGVRKYIRFNTAVRHVEFNEDSQTFTVTVQDHTTDTIYSEEFDYVVCCT  162 (464)
T ss_dssp             TBCHHHHHSSCCCSSCBHHHHHHHHHHHHHHHTCGGGEECSEEEEEEEEETTTTEEEEEEEETTTTEEEEEEESEEEECC
T ss_pred             CCCCCcccCCCCCCCCCHHHHHHHHHHHHHHcCCcceEEeCCEEEEEEEcCCCCcEEEEEEEcCCCceEEEEcCEEEECC
Confidence            110000      0     00001122334556887  888889999987654    677654   4  568999999999


Q ss_pred             C--CCCCcCCCCCCCC-cCc-EEEecCHHHHHHHHHhhhcCCeEEEEcCChHHHHHHHHHHhCCCeEeeeHH---HHH--
Q 012165          171 G--CTASRFPEKIGGY-LPG-VHYIRDVADADALISSLEKAKKVVVVGGGYIGMEVAAAAVGWKLDTTRYEQ---LYQ--  241 (469)
Q Consensus       171 G--~~~~~~~~~~g~~-~~~-v~~~~~~~~~~~~~~~~~~~~~vvVvG~G~~g~e~A~~l~~~g~~v~~~~~---~l~--  241 (469)
                      |  +.|+ .|.++|.+ .++ +.+..++.+.     ....+++|+|||+|.+|+|+|..|++.+.+|+.+..   .+.  
T Consensus       163 G~~s~p~-~p~ipG~~~~~g~~~hs~~~~~~-----~~~~~k~VvVVG~G~sg~eiA~~l~~~g~~V~li~~~~~~~~~~  236 (464)
T 2xve_A          163 GHFSTPY-VPEFEGFEKFGGRILHAHDFRDA-----LEFKDKTVLLVGSSYSAEDIGSQCYKYGAKKLISCYRTAPMGYK  236 (464)
T ss_dssp             CSSSSBC-CCCCBTTTTCCSEEEEGGGCCCG-----GGGTTSEEEEECCSTTHHHHHHHHHHTTCSEEEEECSSCCCCCC
T ss_pred             CCCCCCc-cCCCCCcccCCceEEehhhhCCH-----hHcCCCEEEEEcCCCCHHHHHHHHHHhCCeEEEEEECCCCCCCC
Confidence            9  7776 56667753 234 3332211111     123689999999999999999999999999882211   011  


Q ss_pred             -HcCcEEEcCCeEEEEEeCCCCcEEEEEcCCCCEEeCCEEEEccCCccCCchhhh-cCCcccCC-CEEeCC---CCCCCC
Q 012165          242 -QNGVKFVKGASIKNLEAGSDGRVAAVKLEDGSTIDADTIVIGIGAKPTVSPFER-VGLNSSVG-GIQVDG---QFRTRM  315 (469)
Q Consensus       242 -~~gV~~~~~~~v~~i~~~~~~~v~~v~~~~g~~i~~D~vi~a~G~~p~~~~~~~-~gl~~~~g-~i~Vd~---~~~t~~  315 (469)
                       ..||+++  ..|++++.  +    +|.++||+++++|.||+|+|++|+++++.. +++..+++ .+ ++.   .++|+.
T Consensus       237 ~~~~V~~~--~~V~~i~~--~----~V~~~dG~~i~~D~Vi~atG~~p~~~~l~~~~gl~~~~~~~v-~~~~~~~~~t~~  307 (464)
T 2xve_A          237 WPENWDER--PNLVRVDT--E----NAYFADGSSEKVDAIILCTGYIHHFPFLNDDLRLVTNNRLWP-LNLYKGVVWEDN  307 (464)
T ss_dssp             CCTTEEEC--SCEEEECS--S----EEEETTSCEEECSEEEECCCBCCCCTTBCTTTCCCCCSSSCC-SSEETTTEESSS
T ss_pred             CCCceEEc--CCeEEEeC--C----EEEECCCCEEeCCEEEECCCCCCCCCCcCcccccccCCCccc-ccccceEecCCC
Confidence             2578887  56888852  2    478899999999999999999999998876 67776654 44 443   356899


Q ss_pred             CceEEeccccccCCccCCcccccchHHHHHHHHHHHHHHHhcCCC
Q 012165          316 PGIFAIGDVAAFPLKMYDRTARVEHVDHARQSAQHCIKALLSAQT  360 (469)
Q Consensus       316 ~~Vfa~GD~a~~~~~~~~~~~~~~~~~~A~~~a~~~a~~i~~~~~  360 (469)
                      |+|||+|||+...           .+..|..||+.+|++|.+...
T Consensus       308 p~i~aiGd~~~~~-----------~~~~a~~qa~~~a~~l~G~~~  341 (464)
T 2xve_A          308 PKFFYIGMQDQWY-----------SFNMFDAQAWYARDVIMGRLP  341 (464)
T ss_dssp             TTEEECSCSCCSS-----------CHHHHHHHHHHHHHHHTTSSC
T ss_pred             CCEEEEeCccccc-----------chHHHHHHHHHHHHHHcCCCC
Confidence            9999999988632           455689999999999987543

>3k30_A Histamine dehydrogenase; 6-S-cysteinyl-FMN, ADP binding site, oxidoreductase; HET: FMN ADP; 2.70A {Pimelobacter simplex}

Probab=99.96  E-value=1.9e-30  Score=275.98  Aligned_cols=276  Identities=17%  Similarity=0.124  Sum_probs=188.9

Q ss_pred             cCCcccccccccc---cccccCCCCCCcEEEEcCcHHHHHHHHHHHHcCCCCCcEEEEcCCCCCCCCCCCCcccccCCCC
Q 012165           29 HSSAKNFQRRGFV---VAYSSFANENREFVIVGGGNAAGYAARTFVEHGMADGRLCIVSKEAYAPYERPALTKGYLFPLD  105 (469)
Q Consensus        29 ~~~~~~~~~~~~~---~~~~~~~~~~~~vvIIGgG~AGl~aA~~L~~~g~~~~~V~vie~~~~~~~~~~~l~~~~~~~~~  105 (469)
                      |.+||...++...   +...+....++||+|||||+||++||..|+++|+   +|+|+|+++..+.. ....  ...+..
T Consensus       366 C~vnp~~g~e~~~~~~~~~~~~~~~~~~VvIIGgG~AGl~aA~~La~~G~---~V~liE~~~~~GG~-~~~~--~~~p~~  439 (690)
T 3k30_A          366 CTQNPSMGEEWRRGWHPERIRAKESDARVLVVGAGPSGLEAARALGVRGY---DVVLAEAGRDLGGR-VTQE--SALPGL  439 (690)
T ss_dssp             CSSCTTTTTTTTTCCCSSCCCCCSSCCEEEEECCSHHHHHHHHHHHHHTC---EEEEECSSSSSCTH-HHHH--HTSTTC
T ss_pred             CCcCcccCcccccccCccccCcccccceEEEECCCHHHHHHHHHHHHCCC---eEEEEecCCCCCCE-eeec--cCCCch
Confidence            8899875544321   1222344567899999999999999999999987   79999998765432 0000  001100


Q ss_pred             CCCCCCCCCccccCCCCCCCCHhHHHHC-CcEEEeCCcEEEEeCCCcEEEeCCCeEEEeccEEeccCCCCC-------cC
Q 012165          106 KKPARLPGFHTCVGSGGERQTPEWYKEK-GIEMIYQDPVTSIDIEKQTLITNSGKLLKYGSLIVATGCTAS-------RF  177 (469)
Q Consensus       106 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~i~~~~~~~v~~id~~~~~v~~~~g~~~~yd~lVlAtG~~~~-------~~  177 (469)
                      .....+           .......+.+. +++++++++++          .+++.++.||+||+|||+.++       ..
T Consensus       440 ~~~~~~-----------~~~~~~~~~~~~gv~~~~~~~v~----------~~~~~~~~~d~lvlAtG~~~~~~~~~~~~~  498 (690)
T 3k30_A          440 SAWGRV-----------KEYREAVLAELPNVEIYRESPMT----------GDDIVEFGFEHVITATGATWRTDGVARFHT  498 (690)
T ss_dssp             GGGGHH-----------HHHHHHHHHTCTTEEEESSCCCC----------HHHHHHTTCCEEEECCCEEECSSCCSSSCS
T ss_pred             hHHHHH-----------HHHHHHHHHHcCCCEEEECCeec----------HHHHhhcCCCEEEEcCCCccccccccccCC
Confidence            000000           11223445555 88888875432          233445789999999999853       13


Q ss_pred             CCCCCCCcCcEEEecCHHHHHHHHHhhhcCCeEEEEc--CChHHHHHHHHHHhCCCeEe-------------------ee
Q 012165          178 PEKIGGYLPGVHYIRDVADADALISSLEKAKKVVVVG--GGYIGMEVAAAAVGWKLDTT-------------------RY  236 (469)
Q Consensus       178 ~~~~g~~~~~v~~~~~~~~~~~~~~~~~~~~~vvVvG--~G~~g~e~A~~l~~~g~~v~-------------------~~  236 (469)
                      |.++|.+.+++++.   .+  .+......+++++|||  +|.+|+|+|..|.++|.+|+                   .+
T Consensus       499 ~~i~G~~~~~v~~~---~~--~l~~~~~~g~~VvViG~ggG~~g~e~A~~L~~~g~~Vtlv~~~~~l~~~~~~~~~~~~l  573 (690)
T 3k30_A          499 TALPIAEGMQVLGP---DD--LFAGRLPDGKKVVVYDDDHYYLGGVVAELLAQKGYEVSIVTPGAQVSSWTNNTFEVNRI  573 (690)
T ss_dssp             SCCCBCTTSEEECH---HH--HHTTCCCSSSEEEEEECSCSSHHHHHHHHHHHTTCEEEEEESSSSTTGGGGGGTCHHHH
T ss_pred             CCCCCCCCCcEEcH---HH--HhCCCCCCCCEEEEEcCCCCccHHHHHHHHHhCCCeeEEEecccccccccccchhHHHH
Confidence            45566554444432   22  2222345678899999  99999999999999999887                   34


Q ss_pred             HHHHHHcCcEEEcCCeEEEEEeCCCCcEEEEEcCCCCEEeCCEEEEccCCccCCchhhhcCCcccCCCEEeCCCCCCCCC
Q 012165          237 EQLYQQNGVKFVKGASIKNLEAGSDGRVAAVKLEDGSTIDADTIVIGIGAKPTVSPFERVGLNSSVGGIQVDGQFRTRMP  316 (469)
Q Consensus       237 ~~~l~~~gV~~~~~~~v~~i~~~~~~~v~~v~~~~g~~i~~D~vi~a~G~~p~~~~~~~~gl~~~~g~i~Vd~~~~t~~~  316 (469)
                      .+.+++.||++++++.|++++.+ +..+..+...+++++++|.||+|+|++|++.+++.++...   .       +|+.|
T Consensus       574 ~~~l~~~GV~i~~~~~V~~i~~~-~~~v~~~~~~~~~~i~aD~VV~A~G~~p~~~l~~~l~~~~---~-------~t~~~  642 (690)
T 3k30_A          574 QRRLIENGVARVTDHAVVAVGAG-GVTVRDTYASIERELECDAVVMVTARLPREELYLDLVARR---D-------AGEIA  642 (690)
T ss_dssp             HHHHHHTTCEEEESEEEEEEETT-EEEEEETTTCCEEEEECSEEEEESCEEECCHHHHHHHHHH---H-------HTSCS
T ss_pred             HHHHHHCCCEEEcCcEEEEEECC-eEEEEEccCCeEEEEECCEEEECCCCCCChHHHHHHhhhh---c-------ccCCC
Confidence            67788999999999999999832 2111111123556899999999999999998877643221   1       78999


Q ss_pred             ceEEeccccccCCccCCcccccchHHHHHHHHHHHHHHHhcC
Q 012165          317 GIFAIGDVAAFPLKMYDRTARVEHVDHARQSAQHCIKALLSA  358 (469)
Q Consensus       317 ~Vfa~GD~a~~~~~~~~~~~~~~~~~~A~~~a~~~a~~i~~~  358 (469)
                      +|||+|||+..+           .+..|..+|+.+|.+|.+.
T Consensus       643 ~VyaiGD~~~~~-----------~~~~A~~~g~~aa~~i~~~  673 (690)
T 3k30_A          643 SVRGIGDAWAPG-----------TIAAAVWSGRRAAEEFDAV  673 (690)
T ss_dssp             EEEECGGGTSCB-----------CHHHHHHHHHHHHHHTTCC
T ss_pred             CEEEEeCCCchh-----------hHHHHHHHHHHHHHHHHhh
Confidence            999999999742           3455999999999999864

>1lqt_A FPRA; NADP+ derivative, oxidoreductase, structural G PSI, protein structure initiative, TB structural genomics consortium, TBSGC; HET: FAD ODP; 1.05A {Mycobacterium tuberculosis} SCOP: c.3.1.1 c.4.1.1 PDB: 1lqu_A* 2c7g_A*

Probab=99.96  E-value=1.6e-29  Score=255.56  Aligned_cols=268  Identities=18%  Similarity=0.226  Sum_probs=180.7

Q ss_pred             CCCcEEEEcCcHHHHHHHHHHHH-c------CCCCCcEEEEcCCCCCCCCCCCCcccccCCCCCCCCCCCCCccccCCCC
Q 012165           50 ENREFVIVGGGNAAGYAARTFVE-H------GMADGRLCIVSKEAYAPYERPALTKGYLFPLDKKPARLPGFHTCVGSGG  122 (469)
Q Consensus        50 ~~~~vvIIGgG~AGl~aA~~L~~-~------g~~~~~V~vie~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~  122 (469)
                      .+++|+|||||+||+++|..|++ .      +.   +|+|||+++.+ |...  ..+ ..+.......+           
T Consensus         2 ~~~~VvIIG~G~aGl~aA~~L~~~~~~~~~~g~---~V~lie~~~~~-gg~~--~~g-v~p~~~~~~~~-----------   63 (456)
T 1lqt_A            2 RPYYIAIVGSGPSAFFAAASLLKAADTTEDLDM---AVDMLEMLPTP-WGLV--RSG-VAPDHPKIKSI-----------   63 (456)
T ss_dssp             CCEEEEEECCSHHHHHHHHHHHHHHHHSTTCCE---EEEEEESSSSC-STHH--HHT-SCTTCTGGGGG-----------
T ss_pred             CCCEEEEECcCHHHHHHHHHHHhhCccccCCCC---eEEEEecCCCC-CCcc--ccc-cCCCCCCHHHH-----------
Confidence            35799999999999999999999 7      65   89999998764 3211  000 11110000000           


Q ss_pred             CCCCHhHHHHCCcEEEeCCcEEEEeCCCcEEEeCCCeEEEeccEEeccCCCCCcCCCCCCCCcCcEEEecCHHHHH----
Q 012165          123 ERQTPEWYKEKGIEMIYQDPVTSIDIEKQTLITNSGKLLKYGSLIVATGCTASRFPEKIGGYLPGVHYIRDVADAD----  198 (469)
Q Consensus       123 ~~~~~~~~~~~~i~~~~~~~v~~id~~~~~v~~~~g~~~~yd~lVlAtG~~~~~~~~~~g~~~~~v~~~~~~~~~~----  198 (469)
                      .....+++++.+++++.+..+      ++.|+++++ ++.||+||||||+.+...+.++|.+.+++++.+++....    
T Consensus        64 ~~~~~~~~~~~~v~~~~~v~v------~~~v~~~~~-~~~~d~lViAtG~~~~~~~~ipG~~~~gv~~~~~~~~~~~~~~  136 (456)
T 1lqt_A           64 SKQFEKTAEDPRFRFFGNVVV------GEHVQPGEL-SERYDAVIYAVGAQSDRMLNIPGEDLPGSIAAVDFVGWYNAHP  136 (456)
T ss_dssp             HHHHHHHHTSTTEEEEESCCB------TTTBCHHHH-HHHSSEEEECCCCCEECCCCCTTTTSTTEEEHHHHHHHHTTCG
T ss_pred             HHHHHHHHhcCCCEEEeeEEE------CCEEEECCC-eEeCCEEEEeeCCCCCCCCCCCCCCCCCcEEHHHHHhhhhcCc
Confidence            122345566789999887543      234555555 379999999999973235567887778887754332100    


Q ss_pred             HHHHhh--hcCCeEEEEcCChHHHHHHHHHHhC--------------------CC-eEe------ee-------------
Q 012165          199 ALISSL--EKAKKVVVVGGGYIGMEVAAAAVGW--------------------KL-DTT------RY-------------  236 (469)
Q Consensus       199 ~~~~~~--~~~~~vvVvG~G~~g~e~A~~l~~~--------------------g~-~v~------~~-------------  236 (469)
                      .+....  ..+++++|||+|++|+|+|..|.+.                    +. +|+      .+             
T Consensus       137 d~~~~~~~~~~~~vvVIG~G~~g~e~A~~L~~~~~~l~~tdi~~~~~~~l~~~g~~~V~lv~r~~~~~~~f~~~elrel~  216 (456)
T 1lqt_A          137 HFEQVSPDLSGARAVVIGNGNVALDVARILLTDPDVLARTDIADHALESLRPRGIQEVVIVGRRGPLQAAFTTLELRELA  216 (456)
T ss_dssp             GGTTCCCCCCSSEEEEECCSHHHHHHHHHHHSCHHHHTTSCCCHHHHHHHTTCCCCEEEEECSSCGGGCCCCHHHHHHGG
T ss_pred             ccccchhhcCCCEEEEECCCHHHHHHHHHHHhhhhhhcCCCccHHHHHHHHHCCCcEEEEEecCChhhhccChHHHHHhh
Confidence            000001  1578999999999999999999874                    43 565      00             


Q ss_pred             --------------------------------HHHH----HH------cCcEEEcCCeEEEEEeCCCCcEEEEEcC----
Q 012165          237 --------------------------------EQLY----QQ------NGVKFVKGASIKNLEAGSDGRVAAVKLE----  270 (469)
Q Consensus       237 --------------------------------~~~l----~~------~gV~~~~~~~v~~i~~~~~~~v~~v~~~----  270 (469)
                                                      .+.+    ++      +||++++++.+.++..+  +.+.+|++.    
T Consensus       217 ~lp~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~gv~i~~~~~~~~i~~~--~~v~~v~~~~~~~  294 (456)
T 1lqt_A          217 DLDGVDVVIDPAELDGITDEDAAAVGKVCKQNIKVLRGYADREPRPGHRRMVFRFLTSPIEIKGK--RKVERIVLGRNEL  294 (456)
T ss_dssp             GCTTEEEECCGGGGTTCCHHHHHHHCHHHHHHHHHHHHHHTCC-CTTSEEEEEECSEEEEEEECS--SSCCEEEEEEEEE
T ss_pred             cCCCceeeeChHHhccchhhhhhhccHHHHHHHHHHHHHhhcCCCCCCceEEEEeCCCCeEEecC--CcEeEEEEEEEEe
Confidence                                            1122    23      78999999999999843  444345443    


Q ss_pred             ------------CC--CEEeCCEEEEccCCccCCchhhhcCCccc-CCCEEeCCCCC-CCCCceEEeccccccCCccCCc
Q 012165          271 ------------DG--STIDADTIVIGIGAKPTVSPFERVGLNSS-VGGIQVDGQFR-TRMPGIFAIGDVAAFPLKMYDR  334 (469)
Q Consensus       271 ------------~g--~~i~~D~vi~a~G~~p~~~~~~~~gl~~~-~g~i~Vd~~~~-t~~~~Vfa~GD~a~~~~~~~~~  334 (469)
                                  +|  ++++||+||+++|++|++ +   .++..+ ++++.+|+++| |+.|+|||+|||+..|...   
T Consensus       295 ~~~~~~~~~~~~~g~~~~i~~d~vi~a~G~~p~~-l---~gl~~d~~g~i~vn~~~rvt~~pgvya~GD~~~gp~~~---  367 (456)
T 1lqt_A          295 VSDGSGRVAAKDTGEREELPAQLVVRSVGYRGVP-T---PGLPFDDQSGTIPNVGGRINGSPNEYVVGWIKRGPTGV---  367 (456)
T ss_dssp             EECSSSSEEEEEEEEEEEEECSEEEECSCEECCC-C---TTSCCBTTTTBCCEETTEETTCSSEEECTHHHHCSCSC---
T ss_pred             cCCCcccccccCCCceEEEEcCEEEEccccccCC-C---CCCcccCCCCeeECCCCcCCCCCCEEEEeccCCCCchh---
Confidence                        34  469999999999999986 3   355554 57899999999 7999999999999765421   


Q ss_pred             ccccchHHHHHHHHHHHHHHHhc
Q 012165          335 TARVEHVDHARQSAQHCIKALLS  357 (469)
Q Consensus       335 ~~~~~~~~~A~~~a~~~a~~i~~  357 (469)
                            +..|+.+|..+|.+|+.
T Consensus       368 ------i~~a~~~g~~~a~~i~~  384 (456)
T 1lqt_A          368 ------IGTNKKDAQDTVDTLIK  384 (456)
T ss_dssp             ------TTHHHHHHHHHHHHHHH
T ss_pred             ------HHHHHHHHHHHHHHHHH
Confidence                  22366777777777754

>1ps9_A 2,4-dienoyl-COA reductase; iron-sulfur, TIM barrel, flavodoxin, flavin, electron transfer, hydride transfer, oxidoreductase; HET: FAD FMN NAP MDE; 2.20A {Escherichia coli} SCOP: c.1.4.1 c.3.1.1 c.4.1.1

Probab=99.96  E-value=1.3e-28  Score=261.39  Aligned_cols=270  Identities=18%  Similarity=0.182  Sum_probs=186.1

Q ss_pred             CCCCccccc-------ccCCcccccccccccccccCCCCCCcEEEEcCcHHHHHHHHHHHHcCCCCCcEEEEcCCCCCCC
Q 012165           19 PQSPSLHRI-------RHSSAKNFQRRGFVVAYSSFANENREFVIVGGGNAAGYAARTFVEHGMADGRLCIVSKEAYAPY   91 (469)
Q Consensus        19 ~~~~~~~~~-------~~~~~~~~~~~~~~~~~~~~~~~~~~vvIIGgG~AGl~aA~~L~~~g~~~~~V~vie~~~~~~~   91 (469)
                      .|+..|...       .|.+||....+. ... ......++||+|||||+||++||..|++.|+   +|+|||+++.+++
T Consensus       336 ~c~~~C~~~~~~~~~~~C~~np~~~~e~-~~~-~~~~~~~~~vvIIGgG~AGl~aA~~l~~~g~---~V~lie~~~~~gg  410 (671)
T 1ps9_A          336 GCNQACLDQIFVGKVTSCLVNPRACHET-KMP-ILPAVQKKNLAVVGAGPAGLAFAINAAARGH---QVTLFDAHSEIGG  410 (671)
T ss_dssp             CCCTTTHHHHHTTCCCCCSSCTTTTCTT-TSC-CCSCSSCCEEEEECCSHHHHHHHHHHHTTTC---EEEEEESSSSSCT
T ss_pred             ccccccchhccCCCceEEEeCccccccc-ccC-CCCCCCCCeEEEECCCHHHHHHHHHHHhCCC---eEEEEeCCCCCCC
Confidence            566656421       188888654332 111 2234557899999999999999999999987   7999999887654


Q ss_pred             CCCCCcccccCCCCCCCCCCCCCccccCCCCCCCCHhHHHHCCcEEEeCCcEEEEeCCCcEEEeCCCeEE-EeccEEecc
Q 012165           92 ERPALTKGYLFPLDKKPARLPGFHTCVGSGGERQTPEWYKEKGIEMIYQDPVTSIDIEKQTLITNSGKLL-KYGSLIVAT  170 (469)
Q Consensus        92 ~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~v~~id~~~~~v~~~~g~~~-~yd~lVlAt  170 (469)
                      . ..++.  ..+...   .   +...     .....+++++.+++++.++.|..             ..+ .||+|||||
T Consensus       411 ~-~~~~~--~~~~~~---~---~~~~-----~~~~~~~~~~~gv~~~~~~~v~~-------------~~~~~~d~lviAt  463 (671)
T 1ps9_A          411 Q-FNIAK--QIPGKE---E---FYET-----LRYYRRMIEVTGVTLKLNHTVTA-------------DQLQAFDETILAS  463 (671)
T ss_dssp             T-HHHHT--TSTTCT---T---HHHH-----HHHHHHHHHHHTCEEEESCCCCS-------------SSSCCSSEEEECC
T ss_pred             e-eeccc--cCCCHH---H---HHHH-----HHHHHHHHHHcCCEEEeCcEecH-------------HHhhcCCEEEEcc
Confidence            3 11111  001000   0   0000     01233556778999999865531             114 899999999


Q ss_pred             CCCCCcCCCCCCCCcCcEEEecCHHHHHHHHHhhhcCCeEEEEcCChHHHHHHHHHHhCCCeE-----------------
Q 012165          171 GCTASRFPEKIGGYLPGVHYIRDVADADALISSLEKAKKVVVVGGGYIGMEVAAAAVGWKLDT-----------------  233 (469)
Q Consensus       171 G~~~~~~~~~~g~~~~~v~~~~~~~~~~~~~~~~~~~~~vvVvG~G~~g~e~A~~l~~~g~~v-----------------  233 (469)
                      |++|+ .|.++|.+.+++++..     +.+......+++|+|||+|.+|+|+|..|++.|.++                 
T Consensus       464 G~~p~-~~~i~G~~~~~v~~~~-----~~l~~~~~~~~~VvVIGgG~~g~E~A~~l~~~G~~vtv~~~~~~~~~g~~~~~  537 (671)
T 1ps9_A          464 GIVPR-TPPIDGIDHPKVLSYL-----DVLRDKAPVGNKVAIIGCGGIGFDTAMYLSQPGESTSQNIAGFCNEWGIDSSL  537 (671)
T ss_dssp             CEEEC-CCCCBTTTSTTEEEHH-----HHHTSCCCCCSEEEEECCHHHHHHHHHHHTCCSSCGGGCHHHHHHHTTBCTTC
T ss_pred             CCCcC-CCCCCCCCCCcEeeHH-----HHhhCCCCCCCeEEEECCChhHHHHHHHHHhcCCCcccchhhhhhhhcccccc
Confidence            99987 4667776656666542     222222346799999999999999999999877432                 


Q ss_pred             --------------------e-------------------eeHHHHHHcCcEEEcCCeEEEEEeCCCCcEEEEEcCCC--
Q 012165          234 --------------------T-------------------RYEQLYQQNGVKFVKGASIKNLEAGSDGRVAAVKLEDG--  272 (469)
Q Consensus       234 --------------------~-------------------~~~~~l~~~gV~~~~~~~v~~i~~~~~~~v~~v~~~~g--  272 (469)
                                          +                   .+.+.+++.||++++++.+++++.  ++ + .+. .+|  
T Consensus       538 ~~~~~~~~~~~~~~~~~~~v~l~~~~~~~l~~~l~~~~~~~~~~~l~~~GV~v~~~~~v~~i~~--~~-v-~~~-~~G~~  612 (671)
T 1ps9_A          538 QQAGGLSPQGMQIPRSPRQIVMLQRKASKPGQGLGKTTGWIHRTTLLSRGVKMIPGVSYQKIDD--DG-L-HVV-INGET  612 (671)
T ss_dssp             CSGGGBCTTCCCCCCCSSEEEEECSSCSCTTTTSCTTTHHHHHHHHHHTTCEEECSCEEEEEET--TE-E-EEE-ETTEE
T ss_pred             cccccccccccccCCCCcEEEEEEecchhhccccccccHHHHHHHHHhcCCEEEeCcEEEEEeC--Ce-E-EEe-cCCeE
Confidence                                1                   125678899999999999999973  32 2 232 577  


Q ss_pred             CEEeCCEEEEccCCccCCchhhhcCCcccCCCEEeCCCCCCCCCceEEeccccccCCccCCcccccchHHHHHHHHHHHH
Q 012165          273 STIDADTIVIGIGAKPTVSPFERVGLNSSVGGIQVDGQFRTRMPGIFAIGDVAAFPLKMYDRTARVEHVDHARQSAQHCI  352 (469)
Q Consensus       273 ~~i~~D~vi~a~G~~p~~~~~~~~gl~~~~g~i~Vd~~~~t~~~~Vfa~GD~a~~~~~~~~~~~~~~~~~~A~~~a~~~a  352 (469)
                      +++++|.||+++|++||+++++.+.               ...++||++|||+.....         .+..|+.+|..+|
T Consensus       613 ~~i~~D~Vi~a~G~~p~~~l~~~l~---------------~~g~~v~aiGD~~~~~~~---------~~~~A~~~g~~aA  668 (671)
T 1ps9_A          613 QVLAVDNVVICAGQEPNRALAQPLI---------------DSGKTVHLIGGCDVAMEL---------DARRAIAQGTRLA  668 (671)
T ss_dssp             EEECCSEEEECCCEEECCTTHHHHH---------------TTTCCEEECGGGTCCSSC---------CHHHHHHHHHHHH
T ss_pred             EEEeCCEEEECCCccccHHHHHHHH---------------hcCCCEEEECCcCccCch---------hHHHHHHHHHHHH
Confidence            5799999999999999998876531               123689999999975421         4667999999999


Q ss_pred             HHH
Q 012165          353 KAL  355 (469)
Q Consensus       353 ~~i  355 (469)
                      .+|
T Consensus       669 ~~i  671 (671)
T 1ps9_A          669 LEI  671 (671)
T ss_dssp             HHC
T ss_pred             HhC
Confidence            875

>3s5w_A L-ornithine 5-monooxygenase; class B flavin dependent N-hydroxylating monooxygenase, CLAS flavin dependent monooxygenase N-hydroxylating; HET: FAD ONH NAP; 1.90A {Pseudomonas aeruginosa} PDB: 3s61_A*

Probab=99.95  E-value=5.4e-28  Score=246.19  Aligned_cols=272  Identities=15%  Similarity=0.130  Sum_probs=170.8

Q ss_pred             CCCcEEEEcCcHHHHHHHHHHHHcCCCC---CcEEEEcCCCCCCCCCCCCcccccCC--C--C----CCCCCCCCCccc-
Q 012165           50 ENREFVIVGGGNAAGYAARTFVEHGMAD---GRLCIVSKEAYAPYERPALTKGYLFP--L--D----KKPARLPGFHTC-  117 (469)
Q Consensus        50 ~~~~vvIIGgG~AGl~aA~~L~~~g~~~---~~V~vie~~~~~~~~~~~l~~~~~~~--~--~----~~~~~~~~~~~~-  117 (469)
                      .++||+|||||+||+++|..|++.|. +   .+|+|||+++.++|....+.......  .  +    ..+.....+... 
T Consensus        29 ~~~dVvIIGaG~aGl~aA~~L~~~g~-~~~~~~v~liE~~~~~g~~~~~~~~~~~~~~~~~~~l~~~~~p~~~~~~~~~l  107 (463)
T 3s5w_A           29 VVHDLIGVGFGPSNIALAIALQERAQ-AQGALEVLFLDKQGDYRWHGNTLVSQSELQISFLKDLVSLRNPTSPYSFVNYL  107 (463)
T ss_dssp             CEESEEEECCSHHHHHHHHHHHHHHH-HHCCCCEEEEESCSSCCSSGGGCCSSCBCSSCTTSSSSTTTCTTCTTSHHHHH
T ss_pred             CcCCEEEECCCHHHHHHHHHHHhccc-ccCcccEEEEecCCCCCCcCCCCCCCCcCCcchhhccccccCCCCCCChhHhh
Confidence            35699999999999999999999982 2   38999999998765432111000000  0  0    000000000000 


Q ss_pred             --cC--------CCCC-------CCCHhHHHHCCcEEEeCCcEEEEeCC---Cc----EEEeCCCe----EEEeccEEec
Q 012165          118 --VG--------SGGE-------RQTPEWYKEKGIEMIYQDPVTSIDIE---KQ----TLITNSGK----LLKYGSLIVA  169 (469)
Q Consensus       118 --~~--------~~~~-------~~~~~~~~~~~i~~~~~~~v~~id~~---~~----~v~~~~g~----~~~yd~lVlA  169 (469)
                        .+        ....       .......++.++.++++++|+.++..   ++    +|++.++.    ++.||+||+|
T Consensus       108 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~i~~~~~V~~i~~~~~~~~~~~~~V~~~~g~g~~~~~~~d~lVlA  187 (463)
T 3s5w_A          108 HKHDRLVDFINLGTFYPCRMEFNDYLRWVASHFQEQSRYGEEVLRIEPMLSAGQVEALRVISRNADGEELVRTTRALVVS  187 (463)
T ss_dssp             HHTTCHHHHHHHCCSCCBHHHHHHHHHHHHTTCTTTEEESEEEEEEEEEEETTEEEEEEEEEEETTSCEEEEEESEEEEC
T ss_pred             hhcCceeecccccCCCCCHHHHHHHHHHHHHHcCCeEEeCCEEEEEEEecCCCceEEEEEEEecCCCceEEEEeCEEEEC
Confidence              00        0000       00111223457889999899999876   43    66666665    7999999999


Q ss_pred             cCCCCCcCCC-CCCCCcC-cEEEecCHHH-HHHHHHhhhcCCeEEEEcCChHHHHHHHHHHhC--CCeEeee--------
Q 012165          170 TGCTASRFPE-KIGGYLP-GVHYIRDVAD-ADALISSLEKAKKVVVVGGGYIGMEVAAAAVGW--KLDTTRY--------  236 (469)
Q Consensus       170 tG~~~~~~~~-~~g~~~~-~v~~~~~~~~-~~~~~~~~~~~~~vvVvG~G~~g~e~A~~l~~~--g~~v~~~--------  236 (469)
                      ||+.|. .|. +++.... .+.+.....+ ...+......+++|+|||+|.+|+|+|..|.+.  +.+|+.+        
T Consensus       188 tG~~p~-~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vvVvGgG~sg~e~a~~l~~~~~~~~Vt~v~r~~~~~p  266 (463)
T 3s5w_A          188 PGGTPR-IPQVFRALKGDGRVFHHSQYLEHMAKQPCSSGKPMKIAIIGGGQSAAEAFIDLNDSYPSVQADMILRASALKP  266 (463)
T ss_dssp             CCCEEC-CCGGGGGGTTCTTEEEGGGHHHHHCC-------CEEEEEECCSHHHHHHHHHHHHHCTTEEEEEECSSSSCCB
T ss_pred             CCCCCC-CcchhhhcCCCCcEEECHHHHhhHHHhhhcccCCCeEEEECCCHhHHHHHHHHHhcCCCCeEEEEEeCCCCcC
Confidence            999876 443 2221111 3343332222 112211122589999999999999999999998  7777610        


Q ss_pred             ------------------------------HHHHHH--------------------------cCcEEEcCCeEEEEEeCC
Q 012165          237 ------------------------------EQLYQQ--------------------------NGVKFVKGASIKNLEAGS  260 (469)
Q Consensus       237 ------------------------------~~~l~~--------------------------~gV~~~~~~~v~~i~~~~  260 (469)
                                                    .+.+..                          .||++++++.|++++.++
T Consensus       267 ~~~~~~~~~~~~p~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~v~i~~~~~v~~v~~~~  346 (463)
T 3s5w_A          267 ADDSPFVNEVFAPKFTDLIYSREHAERERLLREYHNTNYSVVDTDLIERIYGVFYRQKVSGIPRHAFRCMTTVERATATA  346 (463)
T ss_dssp             CCCCHHHHGGGSHHHHHHHHHSCHHHHHHHHHHTGGGTSSCBCHHHHHHHHHHHHHHHHHCCCCSEEETTEEEEEEEEET
T ss_pred             ccCCccchhccChhHHHHHhcCCHHHHHHHHHHhhccCCCcCCHHHHHHHHHHHHHHHhcCCCCeEEEeCCEEEEEEecC
Confidence                                          011111                          599999999999998643


Q ss_pred             CCcEEEEEcC---CCCE--EeCCEEEEccCCccC--CchhhhcCCcccCCCEEeCCCCCCC-----CCceEEecccccc
Q 012165          261 DGRVAAVKLE---DGST--IDADTIVIGIGAKPT--VSPFERVGLNSSVGGIQVDGQFRTR-----MPGIFAIGDVAAF  327 (469)
Q Consensus       261 ~~~v~~v~~~---~g~~--i~~D~vi~a~G~~p~--~~~~~~~gl~~~~g~i~Vd~~~~t~-----~~~Vfa~GD~a~~  327 (469)
                      + . ..+.+.   +|+.  +++|.||+|+|++|+  .++++++....  |++.||+++++.     .|+|||+|||...
T Consensus       347 ~-~-~~v~~~~~~~g~~~~~~~D~Vv~AtG~~p~~~~~~l~~l~~~~--g~i~v~~~~~~~~~~~~~~~Ifa~G~~~~~  421 (463)
T 3s5w_A          347 Q-G-IELALRDAGSGELSVETYDAVILATGYERQLHRQLLEPLAEYL--GDHEIGRDYRLQTDERCKVAIYAQGFSQAS  421 (463)
T ss_dssp             T-E-EEEEEEETTTCCEEEEEESEEEECCCEECCC-CTTTGGGGGGB--C--CCCTTSBCCBCTTBCSEEEESSCCHHH
T ss_pred             C-E-EEEEEEEcCCCCeEEEECCEEEEeeCCCCCCccchhHHHHHHh--CCcccCcccccccCCCCCCeEEEcCCCccc
Confidence            3 3 245555   6754  999999999999999  67777654433  789999999873     4679999999864

>2gv8_A Monooxygenase; FMO, FAD, NADPH, cofactor complex, PSI, structura genomics, protein structure initiative; HET: FAD NDP; 2.10A {Schizosaccharomyces pombe} SCOP: c.3.1.5 c.3.1.5 PDB: 2gvc_A* 1vqw_A*

Probab=99.95  E-value=7.2e-28  Score=243.96  Aligned_cols=286  Identities=12%  Similarity=0.081  Sum_probs=184.8

Q ss_pred             CCCCcEEEEcCcHHHHHHHHHHHHcCCCCCcEEEEcCCCCCC----CCCC-C----Cccc-------ccCC-------CC
Q 012165           49 NENREFVIVGGGNAAGYAARTFVEHGMADGRLCIVSKEAYAP----YERP-A----LTKG-------YLFP-------LD  105 (469)
Q Consensus        49 ~~~~~vvIIGgG~AGl~aA~~L~~~g~~~~~V~vie~~~~~~----~~~~-~----l~~~-------~~~~-------~~  105 (469)
                      ++.+||+|||||+||+++|..|++.|. ..+|+|+|+.+..+    |... .    ++..       .+..       ..
T Consensus         4 ~~~~dV~IIGaG~aGl~aA~~L~~~G~-~~~V~v~E~~~~~GG~~~~~~~~~~~~~ip~~~~~~~~~~~~~g~~~~~~~~   82 (447)
T 2gv8_A            4 PTIRKIAIIGAGPSGLVTAKALLAEKA-FDQVTLFERRGSPGGVWNYTSTLSNKLPVPSTNPILTTEPIVGPAALPVYPS   82 (447)
T ss_dssp             CSCCEEEEECCSHHHHHHHHHHHTTTC-CSEEEEECSSSSSSTTCSCCSCCCSCCCSSBCCTTCCCCCBCCSSSCCBCCC
T ss_pred             CCCCEEEEECccHHHHHHHHHHHhcCC-CCCeEEEecCCCCCCeecCCCCCCcccccccccccccccccccccccCCccC
Confidence            346899999999999999999999986 45799999986442    1110 0    0000       0000       00


Q ss_pred             CCCC-----------CCCCCccccCCCC-------CCCCHhHHHHCCcEEEeCCcEEEEeCCCc--EEEeCC---Ce---
Q 012165          106 KKPA-----------RLPGFHTCVGSGG-------ERQTPEWYKEKGIEMIYQDPVTSIDIEKQ--TLITNS---GK---  159 (469)
Q Consensus       106 ~~~~-----------~~~~~~~~~~~~~-------~~~~~~~~~~~~i~~~~~~~v~~id~~~~--~v~~~~---g~---  159 (469)
                      ....           .++++........       .....++.++.+..++++++|+.++....  +|++.+   |+   
T Consensus        83 ~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~i~~~t~V~~v~~~~~~~~V~~~~~~~G~~~~  162 (447)
T 2gv8_A           83 PLYRDLQTNTPIELMGYCDQSFKPQTLQFPHRHTIQEYQRIYAQPLLPFIKLATDVLDIEKKDGSWVVTYKGTKAGSPIS  162 (447)
T ss_dssp             CCCTTCBCSSCHHHHSCTTCCCCTTCCSSCBHHHHHHHHHHHHGGGGGGEECSEEEEEEEEETTEEEEEEEESSTTCCEE
T ss_pred             chhhhhccCCCHHHhccCCCCCCCCCCCCCCHHHHHHHHHHHHHHhhCeEEeCCEEEEEEeCCCeEEEEEeecCCCCeeE
Confidence            0000           0000000000000       00112233344667888999999987654  566654   65   


Q ss_pred             EEEeccEEeccCC--CCCcCCCCCCCCc-----Cc-EEEecCHHHHHHHHHhhhcCCeEEEEcCChHHHHHHHHHHhCCC
Q 012165          160 LLKYGSLIVATGC--TASRFPEKIGGYL-----PG-VHYIRDVADADALISSLEKAKKVVVVGGGYIGMEVAAAAVGWKL  231 (469)
Q Consensus       160 ~~~yd~lVlAtG~--~~~~~~~~~g~~~-----~~-v~~~~~~~~~~~~~~~~~~~~~vvVvG~G~~g~e~A~~l~~~g~  231 (469)
                      ++.||+||+|||.  .|+ .|.++|.+.     ++ +.+..++.+..     ...+++|+|||+|.+|+|+|..|++.+.
T Consensus       163 ~~~~d~VVvAtG~~s~p~-~p~i~G~~~~~~~~~g~v~~~~~~~~~~-----~~~~k~VvVvG~G~sg~e~A~~l~~~~~  236 (447)
T 2gv8_A          163 KDIFDAVSICNGHYEVPY-IPNIKGLDEYAKAVPGSVLHSSLFREPE-----LFVGESVLVVGGASSANDLVRHLTPVAK  236 (447)
T ss_dssp             EEEESEEEECCCSSSSBC-BCCCBTHHHHHHHSTTSEEEGGGCCCGG-----GGTTCCEEEECSSHHHHHHHHHHTTTSC
T ss_pred             EEEeCEEEECCCCCCCCC-CCCCCChhhhhccCCccEEEecccCChh-----hcCCCEEEEEccCcCHHHHHHHHHHHhC
Confidence            7999999999998  554 555565321     22 44332222211     1368999999999999999999999999


Q ss_pred             e-EeeeHH---HHHHcCcEEEcCCeEEEEEeCCCCcEEEEEcCCCCE-EeCCEEEEccCCccCCch-----hhhc--CCc
Q 012165          232 D-TTRYEQ---LYQQNGVKFVKGASIKNLEAGSDGRVAAVKLEDGST-IDADTIVIGIGAKPTVSP-----FERV--GLN  299 (469)
Q Consensus       232 ~-v~~~~~---~l~~~gV~~~~~~~v~~i~~~~~~~v~~v~~~~g~~-i~~D~vi~a~G~~p~~~~-----~~~~--gl~  299 (469)
                      + |+.+..   .++..||.+  ...|+++..+ ++   .|.++||+. +++|.||+|+|++|++++     ++++  ++.
T Consensus       237 ~~V~l~~r~~~~l~~~~i~~--~~~v~~~~~~-~~---~v~~~dG~~~~~~D~vi~atG~~~~~~~l~~~~l~~~~~~i~  310 (447)
T 2gv8_A          237 HPIYQSLLGGGDIQNESLQQ--VPEITKFDPT-TR---EIYLKGGKVLSNIDRVIYCTGYLYSVPFPSLAKLKSPETKLI  310 (447)
T ss_dssp             SSEEEECTTCCSCBCSSEEE--ECCEEEEETT-TT---EEEETTTEEECCCSEEEECCCBCCCCCCHHHHSCCSTTTCCC
T ss_pred             CcEEEEeCCCCcCCCCCeEE--ecCeEEEecC-CC---EEEECCCCEeccCCEEEECCCCCcCCCCCcccccccccCcee
Confidence            8 872221   145667875  4568888632 22   578899976 799999999999999999     7654  233


Q ss_pred             ccCCCEEeCCCCC---CCCCceEEeccccccCCccCCcccccchHHHHHHHHHHHHHHHhcCC
Q 012165          300 SSVGGIQVDGQFR---TRMPGIFAIGDVAAFPLKMYDRTARVEHVDHARQSAQHCIKALLSAQ  359 (469)
Q Consensus       300 ~~~g~i~Vd~~~~---t~~~~Vfa~GD~a~~~~~~~~~~~~~~~~~~A~~~a~~~a~~i~~~~  359 (469)
                      .+ +.+.++.+.+   +++|++|++||+....           .+..|..||+.+|++|.+..
T Consensus       311 ~~-~~~~~~~~~~v~~~~~p~l~~~G~~~~~~-----------~~~~a~~qa~~~a~~~~g~~  361 (447)
T 2gv8_A          311 DD-GSHVHNVYQHIFYIPDPTLAFVGLALHVV-----------PFPTSQAQAAFLARVWSGRL  361 (447)
T ss_dssp             SS-SSSCCSEETTTEETTCTTEEESSCCBSSC-----------HHHHHHHHHHHHHHHHTTSS
T ss_pred             cC-CCcccccccccccCCCCcEEEEecccccc-----------CchHHHHHHHHHHHHHcCCC
Confidence            32 4455555555   6899999999997631           45678999999999998743

>3gwf_A Cyclohexanone monooxygenase; flavoprotein biocatalysis baeyer-villiger oxidation green CH monooxygenase, oxidoreductase; HET: FAD NAP; 2.20A {Rhodococcus SP} PDB: 3gwd_A* 3ucl_A*

Probab=99.93  E-value=2.1e-25  Score=229.85  Aligned_cols=281  Identities=17%  Similarity=0.208  Sum_probs=180.6

Q ss_pred             CCCcEEEEcCcHHHHHHHHHHH-HcCCCCCcEEEEcCCCCCCC-----CCCCC----c-ccccCCCCCC---CCCCCCCc
Q 012165           50 ENREFVIVGGGNAAGYAARTFV-EHGMADGRLCIVSKEAYAPY-----ERPAL----T-KGYLFPLDKK---PARLPGFH  115 (469)
Q Consensus        50 ~~~~vvIIGgG~AGl~aA~~L~-~~g~~~~~V~vie~~~~~~~-----~~~~l----~-~~~~~~~~~~---~~~~~~~~  115 (469)
                      +++||+|||||+||+++|..|+ +.|+   +|+|+|+++..+.     ..|..    . +.+.......   ...+....
T Consensus         7 ~~~dVvIIGaG~aGl~aA~~L~~~~G~---~v~viE~~~~~GGtw~~~~ypg~~~d~~s~~~~~~~~~~~~~~~~~~~~~   83 (540)
T 3gwf_A            7 HTVDAVVIGAGFGGIYAVHKLHHELGL---TTVGFDKADGPGGTWYWNRYPGALSDTESHLYRFSFDRDLLQESTWKTTY   83 (540)
T ss_dssp             EEEEEEEECCSHHHHHHHHHHHHTTCC---CEEEEESSSSSCTHHHHCCCTTCEEEEEGGGSSCCSCHHHHHHCCCSBSE
T ss_pred             CCCCEEEECcCHHHHHHHHHHHHcCCC---CEEEEECCCCCCCcccccCCCCceecCCcceeeeccccccccCCCCcccC
Confidence            4579999999999999999999 8776   8999999765431     11111    0 0010000000   00000000


Q ss_pred             cccCCCCCCCCHhHHHHCCc--EEEeCCcEEEEeCCCc----EEEeCCCeEEEeccEEeccC--CCCCcCCCCCCCC-cC
Q 012165          116 TCVGSGGERQTPEWYKEKGI--EMIYQDPVTSIDIEKQ----TLITNSGKLLKYGSLIVATG--CTASRFPEKIGGY-LP  186 (469)
Q Consensus       116 ~~~~~~~~~~~~~~~~~~~i--~~~~~~~v~~id~~~~----~v~~~~g~~~~yd~lVlAtG--~~~~~~~~~~g~~-~~  186 (469)
                       ....+......+..++.++  .++++++|++++.+..    +|++++|+++.||+||+|||  +.|. .|.++|.+ ..
T Consensus        84 -~~~~ei~~~l~~~~~~~g~~~~i~~~~~V~~i~~~~~~~~~~V~~~~G~~i~ad~lV~AtG~~s~p~-~p~ipG~~~f~  161 (540)
T 3gwf_A           84 -ITQPEILEYLEDVVDRFDLRRHFKFGTEVTSALYLDDENLWEVTTDHGEVYRAKYVVNAVGLLSAIN-FPNLPGLDTFE  161 (540)
T ss_dssp             -EEHHHHHHHHHHHHHHTTCGGGEEESCCEEEEEEETTTTEEEEEETTSCEEEEEEEEECCCSCCSBC-CCCCTTGGGCC
T ss_pred             -CCHHHHHHHHHHHHHHcCCcceeEeccEEEEEEEeCCCCEEEEEEcCCCEEEeCEEEECCcccccCC-CCCCCCccccC
Confidence             0000001112334567787  7888999999987665    78899999999999999999  5665 56666643 33


Q ss_pred             cEEEecCHHHHHHHHHhhhcCCeEEEEcCChHHHHHHHHHHhCCCeEe-------------------eeHHHHH------
Q 012165          187 GVHYIRDVADADALISSLEKAKKVVVVGGGYIGMEVAAAAVGWKLDTT-------------------RYEQLYQ------  241 (469)
Q Consensus       187 ~v~~~~~~~~~~~~~~~~~~~~~vvVvG~G~~g~e~A~~l~~~g~~v~-------------------~~~~~l~------  241 (469)
                      +.......+.    ......+++|+|||+|.+|+|+|..|++.+.+++                   .+++.++      
T Consensus       162 g~~~~~~~~~----~~~~~~~krV~VIG~G~sgve~a~~l~~~~~~Vtv~~r~~~~i~p~~~~~~~~~~~~~l~~~~~~~  237 (540)
T 3gwf_A          162 GETIHTAAWP----EGKSLAGRRVGVIGTGSTGQQVITSLAPEVEHLTVFVRTPQYSVPVGNRPVNPEQIAEIKADYDRI  237 (540)
T ss_dssp             SEEEEGGGCC----SSCCCTTSEEEEECCSHHHHHHHHHHTTTCSEEEEEESSCCCEEECCCCBCCHHHHHHHHHTHHHH
T ss_pred             CCEEEeecCC----CccccccceEEEECCCchHHHHHHHHHhhCCEEEEEECCCCccccCccCCCCHHHHHHHHhccHHH
Confidence            3221111110    1123468999999999999999999999998887                   0111111      


Q ss_pred             --------------------------------------------------------------------------------
Q 012165          242 --------------------------------------------------------------------------------  241 (469)
Q Consensus       242 --------------------------------------------------------------------------------  241 (469)
                                                                                                      
T Consensus       238 ~~~~~~~~~g~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~dp~~~  317 (540)
T 3gwf_A          238 WERAKNSAVAFGFEESTLPAMSVSEEERNRIFQEAWDHGGGFRFMFGTFGDIATDEAANEAAASFIRAKVAEIIEDPETA  317 (540)
T ss_dssp             HHHHHTSSSCSSSCCCCCCGGGSCHHHHHHHHHHHHHHCCHHHHHHTSCSCTTTCHHHHHHHHHHHHHHHHHHCCSHHHH
T ss_pred             HHHHHhccccccccccchhhhhCCHHHHHHHHHHHHhcccchhhhhhhhhhhhcCHHHHHHHHHHHHHHHHHHcCCHHHH
Confidence                                                                                            


Q ss_pred             ------------------------HcCcEEEc--CCeEEEEEeCCCCcEEEEEcCCCCEEeCCEEEEccCCccCCchhhh
Q 012165          242 ------------------------QNGVKFVK--GASIKNLEAGSDGRVAAVKLEDGSTIDADTIVIGIGAKPTVSPFER  295 (469)
Q Consensus       242 ------------------------~~gV~~~~--~~~v~~i~~~~~~~v~~v~~~~g~~i~~D~vi~a~G~~p~~~~~~~  295 (469)
                                              +.+|+++.  +..|++|+++      +|.++||+++++|+||+|||+++++.++..
T Consensus       318 ~~l~P~~~g~kR~~~~~~y~~~l~~~nV~lv~~~~~~I~~it~~------gv~~~dG~~~~~DvIV~ATGf~~~~~~~~~  391 (540)
T 3gwf_A          318 RKLMPKGLFAKRPLCDSGYYEVYNRPNVEAVAIKENPIREVTAK------GVVTEDGVLHELDVLVFATGFDAVDGNYRR  391 (540)
T ss_dssp             HHHCCCSCCCSSCEEESSTGGGGGSTTEEEEETTTSCEEEECSS------EEEETTCCEEECSEEEECCCBSCSSHHHHT
T ss_pred             HhCCCCCCCccccCCCccHHHHhcCCCEEEEeCCCCCccEEecC------eEEcCCCCEEECCEEEECCccCccccCcCc
Confidence                                    45788885  6789999743      688999999999999999999998766665


Q ss_pred             cCCcccCCCEEeCC--------C--CCC-CCCceEEe-ccccccCCccCCcccccchHHHHHHHHHHHHHHHh
Q 012165          296 VGLNSSVGGIQVDG--------Q--FRT-RMPGIFAI-GDVAAFPLKMYDRTARVEHVDHARQSAQHCIKALL  356 (469)
Q Consensus       296 ~gl~~~~g~i~Vd~--------~--~~t-~~~~Vfa~-GD~a~~~~~~~~~~~~~~~~~~A~~~a~~~a~~i~  356 (469)
                      .++... +|+.+++        +  +.+ ..||+|.+ |+.+....          ....+..|++++++.|.
T Consensus       392 ~~i~g~-~G~~l~~~w~~~~~~y~g~~v~gfPN~f~~~Gp~~~~~s----------~~~~~e~q~~~i~~~i~  453 (540)
T 3gwf_A          392 IEIRGR-DGLHINDHWDGQPTSYLGVSTANFPNWFMVLGPNGPFTN----------LPPSIETQVEWISDTIG  453 (540)
T ss_dssp             SEEECG-GGCBHHHHTSSSCCCBTTTBCTTCTTEEESSCSSCBCSC----------HHHHHHHHHHHHHHHHH
T ss_pred             ceEECC-CCcCHHHhhccChhhccccccCCCCceEEEecCCCCCcc----------HHHHHHHHHHHHHHHHH
Confidence            444322 2333332        1  222 78999999 87654111          23346677888877663

>3uox_A Otemo; baeyer-villiger monooxygenase, oxidoreductase; HET: FAD; 1.96A {Pseudomonas putida} PDB: 3uov_A* 3uoy_A* 3uoz_A* 3up4_A* 3up5_A*

Probab=99.90  E-value=1.6e-23  Score=216.15  Aligned_cols=181  Identities=18%  Similarity=0.170  Sum_probs=109.4

Q ss_pred             CCCCcEEEEcCcHHHHHHHHHHHHcCCCCCcEEEEcCCCCCCC-----CCCCC----cc---cccCCCCC-CCCCCCCCc
Q 012165           49 NENREFVIVGGGNAAGYAARTFVEHGMADGRLCIVSKEAYAPY-----ERPAL----TK---GYLFPLDK-KPARLPGFH  115 (469)
Q Consensus        49 ~~~~~vvIIGgG~AGl~aA~~L~~~g~~~~~V~vie~~~~~~~-----~~~~l----~~---~~~~~~~~-~~~~~~~~~  115 (469)
                      +.++||||||||+||+++|..|++.|+   +|+|+|+++..+.     ..|..    ..   .+.+.... ....+....
T Consensus         7 ~~~~dVvIIGaG~aGl~aA~~L~~~g~---~v~iiE~~~~~GGtw~~~~yPg~~~d~~~~~y~~~f~~~~~~~~~~~~~~   83 (545)
T 3uox_A            7 SPALDAVVIGAGVTGIYQAFLINQAGM---KVLGIEAGEDVGGTWYWNRYPGCRLDTESYAYGYFALKGIIPEWEWSENF   83 (545)
T ss_dssp             CCSEEEEEECCSHHHHHHHHHHHHTTC---CEEEECSSSSSCTHHHHCCCTTCBCSSCHHHHCHHHHTTSSTTCCCSBSS
T ss_pred             CCCCCEEEECccHHHHHHHHHHHhCCC---CEEEEeCCCCCCCccccCCCCceeecCchhhcccccCcccccCCCccccC
Confidence            446899999999999999999999887   7999999865421     00110    00   00000000 000000000


Q ss_pred             cccCCCCCCCCHhHHHHCCc--EEEeCCcEEEEeCCCc----EEEeCCCeEEEeccEEeccC--CCCCcCCCCCCCC-cC
Q 012165          116 TCVGSGGERQTPEWYKEKGI--EMIYQDPVTSIDIEKQ----TLITNSGKLLKYGSLIVATG--CTASRFPEKIGGY-LP  186 (469)
Q Consensus       116 ~~~~~~~~~~~~~~~~~~~i--~~~~~~~v~~id~~~~----~v~~~~g~~~~yd~lVlAtG--~~~~~~~~~~g~~-~~  186 (469)
                       ....+.........++.++  .++++++|++++.+..    +|++++|+++.||+||+|||  +.|. .|.++|.+ ..
T Consensus        84 -~~~~ei~~yl~~~~~~~~l~~~i~~~~~V~~~~~~~~~~~w~V~~~~G~~~~ad~lV~AtG~~s~p~-~p~ipG~~~f~  161 (545)
T 3uox_A           84 -ASQPEMLRYVNRAADAMDVRKHYRFNTRVTAARYVENDRLWEVTLDNEEVVTCRFLISATGPLSASR-MPDIKGIDSFK  161 (545)
T ss_dssp             -CBHHHHHHHHHHHHHHHTCGGGEECSCCEEEEEEEGGGTEEEEEETTTEEEEEEEEEECCCSCBC----CCCTTGGGCC
T ss_pred             -CCHHHHHHHHHHHHHHcCCcCcEEECCEEEEEEEeCCCCEEEEEECCCCEEEeCEEEECcCCCCCCc-CCCCCCccccC
Confidence             0000000112233456676  6888899999987654    88899999999999999999  7776 56666643 23


Q ss_pred             cE--EEecCHHHHHHHH-HhhhcCCeEEEEcCChHHHHHHHHHHhCCCeEe
Q 012165          187 GV--HYIRDVADADALI-SSLEKAKKVVVVGGGYIGMEVAAAAVGWKLDTT  234 (469)
Q Consensus       187 ~v--~~~~~~~~~~~~~-~~~~~~~~vvVvG~G~~g~e~A~~l~~~g~~v~  234 (469)
                      +.  ++.....+..... .....+++|+|||+|.+|+|+|..|++.+.+++
T Consensus       162 g~~~h~~~~~~~~~~~~~~~~~~~krV~VIG~G~tgve~a~~la~~~~~Vt  212 (545)
T 3uox_A          162 GESFHSSRWPTDAEGAPKGVDFTGKRVGVIGTGATGVQIIPIAAETAKELY  212 (545)
T ss_dssp             SEEEEGGGCCBCTTSCBSCCCCBTCEEEEECCSHHHHHHHHHHTTTBSEEE
T ss_pred             CCeEEcccccccccccccccccCCCeEEEECCCccHHHHHHHHHhhCCEEE
Confidence            32  2211111100000 012368999999999999999999999988876

>4ap3_A Steroid monooxygenase; oxidoreductase, baeyer-villiger; HET: FAD NAP; 2.39A {Rhodococcus rhodochrous} PDB: 4aox_A* 4aos_A* 4ap1_A*

Probab=99.90  E-value=4.8e-23  Score=212.71  Aligned_cols=178  Identities=18%  Similarity=0.169  Sum_probs=112.1

Q ss_pred             CCCCcEEEEcCcHHHHHHHHHHHHcCCCCCcEEEEcCCCCCCC----C-CCCC----cc-cccCCCCCC---CCCCCCCc
Q 012165           49 NENREFVIVGGGNAAGYAARTFVEHGMADGRLCIVSKEAYAPY----E-RPAL----TK-GYLFPLDKK---PARLPGFH  115 (469)
Q Consensus        49 ~~~~~vvIIGgG~AGl~aA~~L~~~g~~~~~V~vie~~~~~~~----~-~~~l----~~-~~~~~~~~~---~~~~~~~~  115 (469)
                      ..++||+|||||+||+++|..|++.|+   +|+|+|+++..+.    . .|..    .. .+.......   ...+....
T Consensus        19 ~~~~dVvIIGaG~aGl~aA~~L~~~G~---~v~iiE~~~~~GGtw~~~~ypg~~~dv~s~~y~~~f~~~~~~~~~~~~~~   95 (549)
T 4ap3_A           19 TTSYDVVVVGAGIAGLYAIHRFRSQGL---TVRAFEAASGVGGVWYWNRYPGARCDVESIDYSYSFSPELEQEWNWSEKY   95 (549)
T ss_dssp             -CEEEEEEECCSHHHHHHHHHHHHTTC---CEEEECSSSSSCTHHHHCCCTTCBCSSCTTTSSCCSCHHHHHHCCCSSSS
T ss_pred             CCCCCEEEECchHHHHHHHHHHHhCCC---CEEEEeCCCCCCCccccCCCCCceeCCCchhcccccccccccCCCCccCC
Confidence            445799999999999999999999887   8999999765431    0 0111    00 000000000   00000000


Q ss_pred             cccCCCCCCCCHhHHHHCCc--EEEeCCcEEEEeCCCc----EEEeCCCeEEEeccEEeccC--CCCCcCCCCCCCC-cC
Q 012165          116 TCVGSGGERQTPEWYKEKGI--EMIYQDPVTSIDIEKQ----TLITNSGKLLKYGSLIVATG--CTASRFPEKIGGY-LP  186 (469)
Q Consensus       116 ~~~~~~~~~~~~~~~~~~~i--~~~~~~~v~~id~~~~----~v~~~~g~~~~yd~lVlAtG--~~~~~~~~~~g~~-~~  186 (469)
                       ....+......+..++.++  .++++++|++++.+..    +|++.+|+++.||+||+|||  +.|. .|.++|.+ ..
T Consensus        96 -~~~~ei~~yl~~~~~~~g~~~~i~~~~~V~~i~~~~~~~~w~V~~~~G~~i~ad~lV~AtG~~s~p~-~p~ipG~~~f~  173 (549)
T 4ap3_A           96 -ATQPEILAYLEHVADRFDLRRDIRFDTRVTSAVLDEEGLRWTVRTDRGDEVSARFLVVAAGPLSNAN-TPAFDGLDRFT  173 (549)
T ss_dssp             -CBHHHHHHHHHHHHHHTTCGGGEECSCCEEEEEEETTTTEEEEEETTCCEEEEEEEEECCCSEEECC-CCCCTTGGGCC
T ss_pred             -CCHHHHHHHHHHHHHHcCCCccEEECCEEEEEEEcCCCCEEEEEECCCCEEEeCEEEECcCCCCCCC-CCCCCCcccCC
Confidence             0000000112234566777  7888999999987665    88899999999999999999  7776 56667643 33


Q ss_pred             cEEEecCHHHHHHHHHhhhcCCeEEEEcCChHHHHHHHHHHhCCCeEe
Q 012165          187 GVHYIRDVADADALISSLEKAKKVVVVGGGYIGMEVAAAAVGWKLDTT  234 (469)
Q Consensus       187 ~v~~~~~~~~~~~~~~~~~~~~~vvVvG~G~~g~e~A~~l~~~g~~v~  234 (469)
                      +.......++.+   .....+++|+|||+|.+|+|+|..|++.+.+++
T Consensus       174 g~~~~~~~~~~~---~~~~~~krV~VIG~G~sgve~a~~l~~~~~~Vt  218 (549)
T 4ap3_A          174 GDIVHTARWPHD---GVDFTGKRVGVIGTGSSGIQSIPIIAEQAEQLF  218 (549)
T ss_dssp             SEEEEGGGCCTT---CCCCBTCEEEEECCSHHHHHHHHHHHHHBSEEE
T ss_pred             CceEEecccccc---ccccCCCEEEEECCCchHHHHHHHHHhhCCEEE
Confidence            322211111100   012368999999999999999999999988886

>1w4x_A Phenylacetone monooxygenase; baeyer-villiger, FAD; HET: FAD; 1.7A {Thermobifida fusca} SCOP: c.3.1.5 c.3.1.5 PDB: 2ylr_A* 2yls_A* 2ylt_A* 2ym1_A* 2ylw_A* 2ym2_A* 2ylx_A* 2ylz_A*

Probab=99.89  E-value=3.1e-22  Score=207.17  Aligned_cols=284  Identities=16%  Similarity=0.229  Sum_probs=173.6

Q ss_pred             CCCCcEEEEcCcHHHHHHHHHHHHcCCCCCcEEEEcCCCCCCC-----CCCCCcc---cccCCCCCCC-----CCCCCCc
Q 012165           49 NENREFVIVGGGNAAGYAARTFVEHGMADGRLCIVSKEAYAPY-----ERPALTK---GYLFPLDKKP-----ARLPGFH  115 (469)
Q Consensus        49 ~~~~~vvIIGgG~AGl~aA~~L~~~g~~~~~V~vie~~~~~~~-----~~~~l~~---~~~~~~~~~~-----~~~~~~~  115 (469)
                      +..+||+|||||++|+++|..|++.|+   +|+|+|+++..+.     ..|...-   ..........     ..++...
T Consensus        14 ~~~~dVvIIGaG~aGl~aA~~L~~~G~---~v~iiE~~~~~GG~w~~~~~pg~~~d~~~~~~~~~f~~~~~~~~~~~~~~   90 (542)
T 1w4x_A           14 PEEVDVLVVGAGFSGLYALYRLRELGR---SVHVIETAGDVGGVWYWNRYPGARCDIESIEYCYSFSEEVLQEWNWTERY   90 (542)
T ss_dssp             CSEEEEEEECCSHHHHHHHHHHHHTTC---CEEEECSSSSSCTHHHHCCCTTCBCSSCTTTSSCCSCHHHHHHCCCCBSS
T ss_pred             CCCCCEEEECccHHHHHHHHHHHhCCC---CEEEEeCCCCCCCcccccCCCceeecccccccccccChhhhhccCccccc
Confidence            345799999999999999999999987   7999999875421     0011100   0000000000     0000000


Q ss_pred             cccCCCCCCCCHhHHHHCC--cEEEeCCcEEEEeCCC----cEEEeCCCeEEEeccEEeccCC--CCCcCCCCCCCC-cC
Q 012165          116 TCVGSGGERQTPEWYKEKG--IEMIYQDPVTSIDIEK----QTLITNSGKLLKYGSLIVATGC--TASRFPEKIGGY-LP  186 (469)
Q Consensus       116 ~~~~~~~~~~~~~~~~~~~--i~~~~~~~v~~id~~~----~~v~~~~g~~~~yd~lVlAtG~--~~~~~~~~~g~~-~~  186 (469)
                       ..............++.+  ..++++++|++++.+.    .+|++++|+++.||+||+|||.  .|. .|.++|.+ ..
T Consensus        91 -~~~~~i~~yl~~~~~~~~l~~~i~~~~~V~~~~~~~~~~~w~V~~~~G~~~~ad~vV~AtG~~s~p~-~p~i~G~~~f~  168 (542)
T 1w4x_A           91 -ASQPEILRYINFVADKFDLRSGITFHTTVTAAAFDEATNTWTVDTNHGDRIRARYLIMASGQLSVPQ-LPNFPGLKDFA  168 (542)
T ss_dssp             -CBHHHHHHHHHHHHHHTTGGGGEECSCCEEEEEEETTTTEEEEEETTCCEEEEEEEEECCCSCCCCC-CCCCTTGGGCC
T ss_pred             -CCHHHHHHHHHHHHHHcCCCceEEcCcEEEEEEEcCCCCeEEEEECCCCEEEeCEEEECcCCCCCCC-CCCCCCcccCC
Confidence             000000001112234444  5688899999987643    2688888988999999999994  554 56666643 34


Q ss_pred             cEEEecCHHHHHHHHHhhhcCCeEEEEcCChHHHHHHHHHHhCCCeEe-------e------------e-----------
Q 012165          187 GVHYIRDVADADALISSLEKAKKVVVVGGGYIGMEVAAAAVGWKLDTT-------R------------Y-----------  236 (469)
Q Consensus       187 ~v~~~~~~~~~~~~~~~~~~~~~vvVvG~G~~g~e~A~~l~~~g~~v~-------~------------~-----------  236 (469)
                      |.......+..+.   ....+++|+|||+|.+|+|++..+++.+.+++       .            .           
T Consensus       169 G~~~hs~~~~~~~---~~~~gk~V~VIG~G~sg~e~a~~l~~~~~~vtv~~r~~~~~~p~~~~~~~~~~~~~~~~~~p~l  245 (542)
T 1w4x_A          169 GNLYHTGNWPHEP---VDFSGQRVGVIGTGSSGIQVSPQIAKQAAELFVFQRTPHFAVPARNAPLDPEFLADLKKRYAEF  245 (542)
T ss_dssp             SEEEEGGGCCSSC---CCCBTCEEEEECCSHHHHHHHHHHHHHBSEEEEEESSCCCEEECCCCBCCHHHHHHHHTTHHHH
T ss_pred             CceEECCCCCCch---hccCCCEEEEECCCccHHHHHHHHhhcCceEEEEEcCCcccccCCCCCCCHHHHHHHHhhCHHH
Confidence            4222111111000   12368999999999999999999988877665       0            0           


Q ss_pred             --------------------------------HH----------------------------------------------
Q 012165          237 --------------------------------EQ----------------------------------------------  238 (469)
Q Consensus       237 --------------------------------~~----------------------------------------------  238 (469)
                                                      ..                                              
T Consensus       246 ~~~~~~~~~G~~~~~d~~~~~~~~~~~~~~~~~~~~~~gg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  325 (542)
T 1w4x_A          246 REESRNTPGGTHRYQGPKSALEVSDEELVETLERYWQEGGPDILAAYRDILRDRDANERVAEFIRNKIRNTVRDPEVAER  325 (542)
T ss_dssp             HHHHHTSSSSSCCCCCCSCTTTSCHHHHHHHHHHHHHHCSGGGGGSSTTTTTCHHHHHHHHHHHHHHHHHHCSSHHHHHH
T ss_pred             HHHHHhhccccccCccccchhcCCHHHHHHHHHHHHhhcchHHHHHHHHHhcChHHHHHHHHHHHHHHHHHcCCHHHHHh
Confidence                                            00                                              


Q ss_pred             ---------------------HHHHcCcEEE--cCCeEEEEEeCCCCcEEEEEcCCCCEEeCCEEEEccCCccCCchhhh
Q 012165          239 ---------------------LYQQNGVKFV--KGASIKNLEAGSDGRVAAVKLEDGSTIDADTIVIGIGAKPTVSPFER  295 (469)
Q Consensus       239 ---------------------~l~~~gV~~~--~~~~v~~i~~~~~~~v~~v~~~~g~~i~~D~vi~a~G~~p~~~~~~~  295 (469)
                                           .+.+.+|+++  .+..|++++.+      +|.++| +++++|.||+|||+++++.++..
T Consensus       326 l~P~~~~~~~kr~~~~~~y~~~~~~~~v~lv~~~~~~i~~i~~~------gv~~~d-~~~~~D~ii~atG~~~~~~~~~~  398 (542)
T 1w4x_A          326 LVPKGYPFGTKRLILEIDYYEMFNRDNVHLVDTLSAPIETITPR------GVRTSE-REYELDSLVLATGFDALTGALFK  398 (542)
T ss_dssp             HSCCSSCSSSSCCEEESSHHHHTTSTTEEEEETTTSCEEEECSS------EEEESS-CEEECSEEEECCCCCCTTHHHHT
T ss_pred             cCCCCCCccccCCCCCccHHHHhCCCCEEEEecCCCCceEEcCC------eEEeCC-eEEecCEEEEcCCccccccCcCc
Confidence                                 0011346665  35668888632      578889 89999999999999998888776


Q ss_pred             cCCcccCCCEEeCCCCC----------C-CCCceEEe-ccccccCCccCCcccccchH-HHHHHHHHHHHHHHhc
Q 012165          296 VGLNSSVGGIQVDGQFR----------T-RMPGIFAI-GDVAAFPLKMYDRTARVEHV-DHARQSAQHCIKALLS  357 (469)
Q Consensus       296 ~gl~~~~g~i~Vd~~~~----------t-~~~~Vfa~-GD~a~~~~~~~~~~~~~~~~-~~A~~~a~~~a~~i~~  357 (469)
                      .++... +++.+++.++          + ..||+|++ ||.+...         ..++ ..+..|+++++++|..
T Consensus       399 ~~i~g~-~G~~l~~~w~~~~~~y~~~~v~~~Pn~f~~~G~~~~~~---------~~~~~~~~e~q~~~ia~~i~~  463 (542)
T 1w4x_A          399 IDIRGV-GNVALKEKWAAGPRTYLGLSTAGFPNLFFIAGPGSPSA---------LSNMLVSIEQHVEWVTDHIAY  463 (542)
T ss_dssp             SEEECG-GGCBHHHHTTTSCCCBTTTBCTTSTTEEESSCTTSSGG---------GSCHHHHHHHHHHHHHHHHHH
T ss_pred             eeeECC-CCCCHHHhhcCchheecccccCCCCceEEEcCCCCCcc---------cccHHHHHHHHHHHHHHHHHH
Confidence            554433 3455543221          1 56777776 7665311         2244 5688899999998864

>2ywl_A Thioredoxin reductase related protein; uncharacterized conserved protein, rossmann fold, structural genomics, NPPSFA; HET: FAD; 1.60A {Thermus thermophilus} PDB: 2cvj_A*

Probab=99.79  E-value=9.5e-19  Score=154.29  Aligned_cols=134  Identities=24%  Similarity=0.261  Sum_probs=112.5

Q ss_pred             eEEEEcCChHHHHHHHHHHhCCCeEe--------------------------------eeHHHHHHcCcEEEcCCeEEEE
Q 012165          209 KVVVVGGGYIGMEVAAAAVGWKLDTT--------------------------------RYEQLYQQNGVKFVKGASIKNL  256 (469)
Q Consensus       209 ~vvVvG~G~~g~e~A~~l~~~g~~v~--------------------------------~~~~~l~~~gV~~~~~~~v~~i  256 (469)
                      +++|||+|++|+++|..|+++|.+++                                .+.+.+++.||+++.+ +++++
T Consensus         3 ~vvIIGgG~~Gl~~A~~l~~~g~~v~lie~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~gv~v~~~-~v~~i   81 (180)
T 2ywl_A            3 DVIVVGGGPSGLSAALFLARAGLKVLVLDGGRSKVKGVSRVPNYPGLLDEPSGEELLRRLEAHARRYGAEVRPG-VVKGV   81 (180)
T ss_dssp             EEEEECCSHHHHHHHHHHHHTTCCEEEEECSCCTTTTCSCCCCSTTCTTCCCHHHHHHHHHHHHHHTTCEEEEC-CCCEE
T ss_pred             eEEEECCCHHHHHHHHHHHHCCCcEEEEeCCCCcccCchhhhccCCCcCCCCHHHHHHHHHHHHHHcCCEEEeC-EEEEE
Confidence            68999999999999999999988876                                1235567789999999 99999


Q ss_pred             EeCCCCcEEEEEcCCCCEEeCCEEEEccCCccCCchhhhcCCcccCCCEEeCCCCCCCCCceEEeccccccCCccCCccc
Q 012165          257 EAGSDGRVAAVKLEDGSTIDADTIVIGIGAKPTVSPFERVGLNSSVGGIQVDGQFRTRMPGIFAIGDVAAFPLKMYDRTA  336 (469)
Q Consensus       257 ~~~~~~~v~~v~~~~g~~i~~D~vi~a~G~~p~~~~~~~~gl~~~~g~i~Vd~~~~t~~~~Vfa~GD~a~~~~~~~~~~~  336 (469)
                      +.++++  ..+.+++| ++++|.||+|+|.+|+  +++.+|++.++|.|.||+++||+.|+|||+|||+..+.+      
T Consensus        82 ~~~~~~--~~v~~~~g-~i~ad~vI~A~G~~~~--~~~~~g~~~~~g~i~vd~~~~t~~~~i~a~GD~~~~~~~------  150 (180)
T 2ywl_A           82 RDMGGV--FEVETEEG-VEKAERLLLCTHKDPT--LPSLLGLTRRGAYIDTDEGGRTSYPRVYAAGVARGKVPG------  150 (180)
T ss_dssp             EECSSS--EEEECSSC-EEEEEEEEECCTTCCH--HHHHHTCCEETTEECCCTTCBCSSTTEEECGGGGTCCSC------
T ss_pred             EEcCCE--EEEEECCC-EEEECEEEECCCCCCC--ccccCCCCccCceEEeCCCCCcCCCCEEEeecccCcchh------
Confidence            865333  35788888 8999999999999984  567778877766788999999999999999999986531      


Q ss_pred             ccchHHHHHHHHHHHHHHHhc
Q 012165          337 RVEHVDHARQSAQHCIKALLS  357 (469)
Q Consensus       337 ~~~~~~~A~~~a~~~a~~i~~  357 (469)
                         .+..|..+|+.+|.+|.+
T Consensus       151 ---~~~~A~~~g~~aa~~i~~  168 (180)
T 2ywl_A          151 ---HAIISAGDGAYVAVHLVS  168 (180)
T ss_dssp             ---CHHHHHHHHHHHHHHHHH
T ss_pred             ---hHHHHHHhHHHHHHHHHH
Confidence               456789999999999975

>4b63_A L-ornithine N5 monooxygenase; oxidoreductase, siderophore, flavin; HET: FAD NAP; 1.90A {Aspergillus fumigatus} PDB: 4b64_A* 4b65_A* 4b66_A* 4b67_A* 4b68_A* 4b69_A*

Probab=99.77  E-value=1.7e-17  Score=169.69  Aligned_cols=273  Identities=17%  Similarity=0.224  Sum_probs=151.0

Q ss_pred             CCCCcEEEEcCcHHHHHHHHHHHHcCCC-----------CCcEEEEcCCCCCCCCCCCCccc------ccCC---CCCCC
Q 012165           49 NENREFVIVGGGNAAGYAARTFVEHGMA-----------DGRLCIVSKEAYAPYERPALTKG------YLFP---LDKKP  108 (469)
Q Consensus        49 ~~~~~vvIIGgG~AGl~aA~~L~~~g~~-----------~~~V~vie~~~~~~~~~~~l~~~------~~~~---~~~~~  108 (469)
                      ...+||||||+||+||++|..|.+.+.+           ....+.+|+.+.+.|+.-.+..+      ++..   .....
T Consensus        37 ~~i~Dvi~IGaGp~gLa~A~~L~~~~~~~~~~~~~~~~~~~~~~f~e~~~~f~Wh~g~~~p~~~~q~~fl~Dlvtl~~P~  116 (501)
T 4b63_A           37 DELHDLLCVGFGPASLAIAIALHDALDPRLNKSASNIHAQPKICFLERQKQFAWHSGMLVPGSKMQISFIKDLATLRDPR  116 (501)
T ss_dssp             TSCEEEEEECCSHHHHHHHHHHHHHHCTTTCTTC----CCCCEEEEESSSSCCSSGGGCCTTCBCSSCGGGSSSTTTCTT
T ss_pred             CCcCcEEEEcccHHHHHHHHHHHhcCCCceEEeccccCCCcceeeEeccCCCCcCCCCCCCCccccccchhhhccccCCC
Confidence            3458999999999999999999886532           23567888887766542111100      0000   00000


Q ss_pred             CCCCCCcc-----------ccCCCC------CCCCHhHH-HHCCcEEEeCCcEEEEeCCC----------cEEEeCCC--
Q 012165          109 ARLPGFHT-----------CVGSGG------ERQTPEWY-KEKGIEMIYQDPVTSIDIEK----------QTLITNSG--  158 (469)
Q Consensus       109 ~~~~~~~~-----------~~~~~~------~~~~~~~~-~~~~i~~~~~~~v~~id~~~----------~~v~~~~g--  158 (469)
                      ..+ .|..           ......      ...+.+|+ ++.+..++++++|+++.+..          .+|++.++  
T Consensus       117 s~~-sf~~yl~~~~rl~~f~~~~~~~p~r~E~~~Yl~~~A~~~~~~vrf~~~V~~v~~~~~~~~~~~~~~~~V~~~~~~~  195 (501)
T 4b63_A          117 SSF-TFLNYLHQKGRLIHFTNLSTFLPARLEFEDYMRWCAQQFSDVVAYGEEVVEVIPGKSDPSSSVVDFFTVRSRNVET  195 (501)
T ss_dssp             CTT-SHHHHHHHHTCHHHHHTTCCSCCBHHHHHHHHHHHHHTTGGGEEESEEEEEEEEECSSTTSSCBCEEEEEEEETTT
T ss_pred             Ccc-chHHHHHHhCCccCCccccCCCCCHHHHHHHHHHHHHHcCCceEcceEEEeeccccccccccccceEEEEEecCCC
Confidence            000 0000           000000      00111222 34466688899999986432          35666443  


Q ss_pred             ---eEEEeccEEeccCCCCCcCCCCCCCCcCcEEEecCHHHH-HHHHHhhhcCCeEEEEcCChHHHHHHHHHHhC--CCe
Q 012165          159 ---KLLKYGSLIVATGCTASRFPEKIGGYLPGVHYIRDVADA-DALISSLEKAKKVVVVGGGYIGMEVAAAAVGW--KLD  232 (469)
Q Consensus       159 ---~~~~yd~lVlAtG~~~~~~~~~~g~~~~~v~~~~~~~~~-~~~~~~~~~~~~vvVvG~G~~g~e~A~~l~~~--g~~  232 (469)
                         +++.+++||+|||..|. +|...+. .+.+++.....+. +.+......+|+|+|||+|.+|+|++..|++.  +.+
T Consensus       196 g~~~~~~ar~vVlatG~~P~-iP~~~~~-~g~v~Hss~y~~~~~~~~~~~~~gKrV~VVG~G~SA~ei~~~L~~~~~~~~  273 (501)
T 4b63_A          196 GEISARRTRKVVIAIGGTAK-MPSGLPQ-DPRIIHSSKYCTTLPALLKDKSKPYNIAVLGSGQSAAEIFHDLQKRYPNSR  273 (501)
T ss_dssp             CCEEEEEEEEEEECCCCEEC-CCTTSCC-CTTEEEGGGHHHHHHHHSCCTTSCCEEEEECCSHHHHHHHHHHHHHSTTCE
T ss_pred             ceEEEEEeCEEEECcCCCCC-CCCCCCC-CcceeeccccccchhhccccccCCcEEEEECCcHHHHHHHHHHHhcCCCce
Confidence               36899999999998876 4543332 2345544333222 22222234789999999999999999999764  455


Q ss_pred             Ee-------------------------------------------------------ee----HHHHH---------HcC
Q 012165          233 TT-------------------------------------------------------RY----EQLYQ---------QNG  244 (469)
Q Consensus       233 v~-------------------------------------------------------~~----~~~l~---------~~g  244 (469)
                      ++                                                       .+    ...++         ...
T Consensus       274 v~~~~R~~~~~p~~~s~~~~~~f~p~~~~~f~~l~~~~r~~~~~~~~~~~~~~v~~~li~~i~~~~y~~~~~~~~~~~~~  353 (501)
T 4b63_A          274 TTLIMRDSAMRPSDDSPFVNEIFNPERVDKFYSQSAAERQRSLLADKATNYSVVRLELIEEIYNDMYLQRVKNPDETQWQ  353 (501)
T ss_dssp             EEEECSSSSCCBCCCCTTGGGGGSTTHHHHHHTSCHHHHHHHHHHTGGGTSSCBCHHHHHHHHHHHHHHHHHCSCGGGCS
T ss_pred             EEEEeCCCccccccccccchhhcCHHHHHHHHhCCHHHHHHHHHHHHhhhhcccCHHHHHHHHHHHHhhccCCCcccccc
Confidence            54                                                       00    00000         012


Q ss_pred             cEEEcCCeEEEEEeCCC-CcE-----------EEEEcCCCCEEeCCEEEEccCCccCCc-hh-hhc-CCcc-cCCCEEeC
Q 012165          245 VKFVKGASIKNLEAGSD-GRV-----------AAVKLEDGSTIDADTIVIGIGAKPTVS-PF-ERV-GLNS-SVGGIQVD  308 (469)
Q Consensus       245 V~~~~~~~v~~i~~~~~-~~v-----------~~v~~~~g~~i~~D~vi~a~G~~p~~~-~~-~~~-gl~~-~~g~i~Vd  308 (469)
                      ..+..+..+..+..... +++           .++.+.+|+++++|.||+|||++++.. +| ..+ .+.. +.|...|+
T Consensus       354 ~~l~~~~~v~~~~~~~~~~~~~v~~~~~~~~~~~v~~~dg~~~~~D~VI~ATGy~~~~p~~L~~~~~~l~~d~~g~~~v~  433 (501)
T 4b63_A          354 HRILPERKITRVEHHGPQSRMRIHLKSSKPESEGAANDVKETLEVDALMVATGYNRNAHERLLSKVQHLRPTGQDQWKPH  433 (501)
T ss_dssp             SEEECSEEEEEEECCSSSSCEEEEEEESCC--------CCCEEEESEEEECCCEECCTHHHHTGGGGGGSSTTCCSCCBC
T ss_pred             eeecCCcceeeeeecCCCCeEEEEeeeeEEeCCeeEeCCCeEEECCEEEECcCCCCCCcchhcchhhhcCcCcCCCeeeC
Confidence            24555555555553221 221           134567889999999999999998853 22 211 1222 24667777


Q ss_pred             CCCCC--------CCCceEEeccc
Q 012165          309 GQFRT--------RMPGIFAIGDV  324 (469)
Q Consensus       309 ~~~~t--------~~~~Vfa~GD~  324 (469)
                      .+++.        ..++||+-|-+
T Consensus       434 rdy~~~~~~~~~~~~~~i~~qg~~  457 (501)
T 4b63_A          434 RDYRVEMDPSKVSSEAGIWLQGCN  457 (501)
T ss_dssp             TTSBBCCCTTTBCTTCEEEECSCC
T ss_pred             CCcEEeecCCccCCCceEEecCCC
Confidence            65542        24679999843

>2e5v_A L-aspartate oxidase; archaea, oxidoreductase; HET: FAD; 2.09A {Sulfolobus tokodaii}

Probab=99.54  E-value=4.3e-16  Score=158.14  Aligned_cols=206  Identities=15%  Similarity=0.107  Sum_probs=110.6

Q ss_pred             HHHHCCcEEEeCCcEEEEeCCCcEE---EeC-CCeEEEeccEEeccCCCCCcCCCCCCCCcCcEEEecCHHHHHHH----
Q 012165          129 WYKEKGIEMIYQDPVTSIDIEKQTL---ITN-SGKLLKYGSLIVATGCTASRFPEKIGGYLPGVHYIRDVADADAL----  200 (469)
Q Consensus       129 ~~~~~~i~~~~~~~v~~id~~~~~v---~~~-~g~~~~yd~lVlAtG~~~~~~~~~~g~~~~~v~~~~~~~~~~~~----  200 (469)
                      .+++.+++++.++.| .+..++..+   .+. ++.++.+|.||+|||+.+..++...+.  ++ .+...+.-+.+.    
T Consensus       128 ~~~~~gv~i~~~~~v-~l~~~~~~v~Gv~v~~~~g~~~a~~VVlAtGg~~~~~~~~~~~--~~-~tGdgi~~a~~aGa~~  203 (472)
T 2e5v_A          128 LAREEGIPIIEDRLV-EIRVKDGKVTGFVTEKRGLVEDVDKLVLATGGYSYLYEYSSTQ--ST-NIGDGMAIAFKAGTIL  203 (472)
T ss_dssp             HHHHTTCCEECCCEE-EEEEETTEEEEEEETTTEEECCCSEEEECCCCCGGGSSSBSSC--TT-CSCHHHHHHHHTTCCE
T ss_pred             HHHhCCCEEEECcEE-EEEEeCCEEEEEEEEeCCCeEEeeeEEECCCCCcccCccccCC--CC-CchHHHHHHHHcCCCE
Confidence            345679999999889 887655543   332 233578999999999987643321110  11 111000001000    


Q ss_pred             H--HhhhcCCeEEEEcCChHHHHHHHHHHhCCCeEe-------------------------eeHHHHHHcCcEEEcCCeE
Q 012165          201 I--SSLEKAKKVVVVGGGYIGMEVAAAAVGWKLDTT-------------------------RYEQLYQQNGVKFVKGASI  253 (469)
Q Consensus       201 ~--~~~~~~~~vvVvG~G~~g~e~A~~l~~~g~~v~-------------------------~~~~~l~~~gV~~~~~~~v  253 (469)
                      .  +..+....++++|+|  +++++..+...|..+.                         .+.+.+++.|. ++++.. 
T Consensus       204 ~d~e~~q~~p~~~~~ggg--~~~~ae~~~~~G~~~v~~~g~rf~~~~~~~~el~~rd~v~~~i~~~~~~~~~-v~ld~~-  279 (472)
T 2e5v_A          204 ADMEFVQFHPTVTSLDGE--VFLLTETLRGEGAQIINENGERFLFNYDKRGELAPRDILSRAIYIEMLKGHK-VFIDLS-  279 (472)
T ss_dssp             ECTTCEEEEEEEECGGGC--CEECCTHHHHTTCEEEETTCCCGGGGTCTTGGGSCHHHHHHHHHHHHHHTCC-EEEECT-
T ss_pred             eCCcceEEEeEEEccCCC--ceeeehhhcCCceEEECCCCCCCCccCCcccCcCchhHHHHHHHHHHHhCCc-EEEecc-
Confidence            0  000111233445666  7777777777766554                         11122223332 221110 


Q ss_pred             EEEEeCCCCcEEEEEcCCCCEEe-CCEEEEccCCccCCchhhhcCCc-ccCCCEEeCCCCCCCCCceEEeccccccCCcc
Q 012165          254 KNLEAGSDGRVAAVKLEDGSTID-ADTIVIGIGAKPTVSPFERVGLN-SSVGGIQVDGQFRTRMPGIFAIGDVAAFPLKM  331 (469)
Q Consensus       254 ~~i~~~~~~~v~~v~~~~g~~i~-~D~vi~a~G~~p~~~~~~~~gl~-~~~g~i~Vd~~~~t~~~~Vfa~GD~a~~~~~~  331 (469)
                       .+    +.      +.  +.++ .|.++++.|..|+ ++++-.... ...|+|.||+++||++|+|||+|||+......
T Consensus       280 -~~----~~------~~--~~~~~~~~~~~~~G~dp~-~~i~v~p~~~~~~GGI~vd~~~~t~ipgLyAaGd~a~~~~hg  345 (472)
T 2e5v_A          280 -KI----ED------FE--RKFPVVAKYLARHGHNYK-VKIPIFPAAHFVDGGIRVNIRGESNIVNLYAIGEVSDSGLHG  345 (472)
T ss_dssp             -TC----TT------HH--HHCHHHHHHHHHTTCCTT-SCEECEEEEEEESCEEECCTTCBCSSBTEEECGGGEECSSST
T ss_pred             -ch----HH------HH--HHhHHHHHHHHHhCcCcc-cceEeehhhceeCCCeEECCCCccccCCEEecchhcccccCC
Confidence             00    00      00  1233 4667888899998 654422111 23589999999999999999999998732110


Q ss_pred             CCcccccchHHHHHHHHHHHHHHHhc
Q 012165          332 YDRTARVEHVDHARQSAQHCIKALLS  357 (469)
Q Consensus       332 ~~~~~~~~~~~~A~~~a~~~a~~i~~  357 (469)
                      ..+ ....+...+...|+.+++++.+
T Consensus       346 ~~r-l~~~sl~~~~v~G~~a~~~~a~  370 (472)
T 2e5v_A          346 ANR-LASNSLLEGLVFGINLPRYVDS  370 (472)
T ss_dssp             TSC-CTTHHHHHHHHHHHHGGGTTTS
T ss_pred             CCC-CCcccHHHHHHHHHHHHHHHHh
Confidence            011 1122455667778877777754

>2gqf_A Hypothetical protein HI0933; structural genomics, FAD-utilizing protein, flavoprotein, PS protein structure initiative; HET: FAD; 2.70A {Haemophilus influenzae} SCOP: c.3.1.8 e.74.1.1

Probab=99.46  E-value=3.1e-15  Score=148.55  Aligned_cols=122  Identities=19%  Similarity=0.173  Sum_probs=73.2

Q ss_pred             CCCcEEEEcCcHHHHHHHHHHHHcCCCCCcEEEEcCCCCCCC-------CCCCCcc------cccCCCCCCCCC----C-
Q 012165           50 ENREFVIVGGGNAAGYAARTFVEHGMADGRLCIVSKEAYAPY-------ERPALTK------GYLFPLDKKPAR----L-  111 (469)
Q Consensus        50 ~~~~vvIIGgG~AGl~aA~~L~~~g~~~~~V~vie~~~~~~~-------~~~~l~~------~~~~~~~~~~~~----~-  111 (469)
                      +++||+|||||++|+++|..|+++|.   +|+|+|+.+....       .+..+..      .++.........    + 
T Consensus         3 ~~~dViIIGgG~aGl~aA~~la~~G~---~V~vlEk~~~~g~~~~~sggg~cn~~~~~~~~~~~~~~~~~~~~~~l~~~~   79 (401)
T 2gqf_A            3 QYSENIIIGAGAAGLFCAAQLAKLGK---SVTVFDNGKKIGRKILMSGGGFCNFTNLEVTPAHYLSQNPHFVKSALARYT   79 (401)
T ss_dssp             EECSEEEECCSHHHHHHHHHHHHTTC---CEEEECSSSSSCHHHHHGGGGTCCCEESSCCGGGEECSCTTSTHHHHHHSC
T ss_pred             CCCCEEEECCcHHHHHHHHHHHhCCC---CEEEEeCCCCCchhcEEcCCCeEEccCCccCHHHhccCCHHHHHHHHHhCC
Confidence            35899999999999999999999987   7999999875310       0111110      011000000000    0 


Q ss_pred             ----------CCCcc-------c----cCCCCCCCCHhHHHHCCcEEEeCCcEEEEeCC----C--cEEEeCCCeEEEec
Q 012165          112 ----------PGFHT-------C----VGSGGERQTPEWYKEKGIEMIYQDPVTSIDIE----K--QTLITNSGKLLKYG  164 (469)
Q Consensus       112 ----------~~~~~-------~----~~~~~~~~~~~~~~~~~i~~~~~~~v~~id~~----~--~~v~~~~g~~~~yd  164 (469)
                                .+...       .    ........+.+.+++.|++++.+++|+++..+    .  ..|.+.++ ++.+|
T Consensus        80 ~~~~~~~~~~~Gi~~~~~~~g~~~p~~~~~~l~~~L~~~~~~~Gv~i~~~~~v~~i~~~~~g~~~~~~v~~~~g-~i~ad  158 (401)
T 2gqf_A           80 NWDFISLVAEQGITYHEKELGQLFCDEGAEQIVEMLKSECDKYGAKILLRSEVSQVERIQNDEKVRFVLQVNST-QWQCK  158 (401)
T ss_dssp             HHHHHHHHHHTTCCEEECSTTEEEETTCTHHHHHHHHHHHHHHTCEEECSCCEEEEEECCSCSSCCEEEEETTE-EEEES
T ss_pred             HHHHHHHHHhCCCceEECcCCEEccCCCHHHHHHHHHHHHHHCCCEEEeCCEEEEEEcccCcCCCeEEEEECCC-EEECC
Confidence                      00000       0    00000011233456679999999999998744    2  35666666 69999


Q ss_pred             cEEeccCCCCC
Q 012165          165 SLIVATGCTAS  175 (469)
Q Consensus       165 ~lVlAtG~~~~  175 (469)
                      +||+|||+.+.
T Consensus       159 ~VVlAtG~~s~  169 (401)
T 2gqf_A          159 NLIVATGGLSM  169 (401)
T ss_dssp             EEEECCCCSSC
T ss_pred             EEEECCCCccC
Confidence            99999998863

>2cul_A Glucose-inhibited division protein A-related PROT probable oxidoreductase; rossmann fold, protein-FAD complex; HET: FAD; 1.65A {Thermus thermophilus} SCOP: c.3.1.7

Probab=99.42  E-value=2e-12  Score=118.40  Aligned_cols=137  Identities=18%  Similarity=0.251  Sum_probs=98.7

Q ss_pred             CeEEEEcCChHHHHHHHHHHhCCCeEeee------------------------------------------HHHHHHc-C
Q 012165          208 KKVVVVGGGYIGMEVAAAAVGWKLDTTRY------------------------------------------EQLYQQN-G  244 (469)
Q Consensus       208 ~~vvVvG~G~~g~e~A~~l~~~g~~v~~~------------------------------------------~~~l~~~-g  244 (469)
                      .+|+|||+|++|+++|..|+++|.+++.+                                          .+.+++. |
T Consensus         4 ~dVvVVGgG~aGl~aA~~la~~g~~v~lie~~~~~~G~~~~~~~~~~~~~~~~~~~~d~~g~~~~~~~~~l~~~~~~~~g   83 (232)
T 2cul_A            4 YQVLIVGAGFSGAETAFWLAQKGVRVGLLTQSLDAVMMPFLPPKPPFPPGSLLERAYDPKDERVWAFHARAKYLLEGLRP   83 (232)
T ss_dssp             CSEEEECCSHHHHHHHHHHHHTTCCEEEEESCGGGTTCCSSCCCSCCCTTCHHHHHCCTTCCCHHHHHHHHHHHHHTCTT
T ss_pred             CCEEEECcCHHHHHHHHHHHHCCCCEEEEecCCCcCCcccCccccccchhhHHhhhccCCCCCHHHHHHHHHHHHHcCCC
Confidence            47999999999999999999999887621                                          2445565 9


Q ss_pred             cEEEcCCeEEEEEeCCCCcEEEEEcCCCCEEeCCEEEEccCCccCC--------------------ch---hhhcCCccc
Q 012165          245 VKFVKGASIKNLEAGSDGRVAAVKLEDGSTIDADTIVIGIGAKPTV--------------------SP---FERVGLNSS  301 (469)
Q Consensus       245 V~~~~~~~v~~i~~~~~~~v~~v~~~~g~~i~~D~vi~a~G~~p~~--------------------~~---~~~~gl~~~  301 (469)
                      ++++ +++++++..+ ++.+..|.+.+|+++++|.||+|+|..++.                    .+   +++.++...
T Consensus        84 v~i~-~~~v~~i~~~-~~~v~~v~~~~g~~i~a~~VV~A~G~~s~~~~~~G~~~~~~g~~g~~~~~~l~~~l~~~g~~~~  161 (232)
T 2cul_A           84 LHLF-QATATGLLLE-GNRVVGVRTWEGPPARGEKVVLAVGSFLGARLFLGGVVEEAGRLSEASYPDLLEDLSRLGFRFV  161 (232)
T ss_dssp             EEEE-ECCEEEEEEE-TTEEEEEEETTSCCEECSEEEECCTTCSSCEEEETTEEESEEETTEECCSHHHHHHHHTTCCEE
T ss_pred             cEEE-EeEEEEEEEe-CCEEEEEEECCCCEEECCEEEECCCCChhhceecCCccCCCCCCcccchhhhCHHHHhCCCeEE
Confidence            9999 5689999864 456667888899899999999999995432                    22   234444433


Q ss_pred             CCC----------------EEeCC------C-CCCCCCceEEeccccccCCccCCcccccchHHHHHHHHHHHHHHHhc
Q 012165          302 VGG----------------IQVDG------Q-FRTRMPGIFAIGDVAAFPLKMYDRTARVEHVDHARQSAQHCIKALLS  357 (469)
Q Consensus       302 ~g~----------------i~Vd~------~-~~t~~~~Vfa~GD~a~~~~~~~~~~~~~~~~~~A~~~a~~~a~~i~~  357 (469)
                      ++.                .....      . .+|++|+|||+|||+ ...          .+..+..+|+.+|.+|+.
T Consensus       162 ~~~~~~~~~~g~p~~~~~~~~~~~~~~~~~~~~~t~~p~iya~G~~a-~~g----------~~~~~~~~g~~~a~~i~~  229 (232)
T 2cul_A          162 EREGEVPETPSTPGYRVRYLAFHPEEWEEKTFRLKRLEGLYAVGLCV-REG----------DYARMSEEGKRLAEHLLH  229 (232)
T ss_dssp             EEEEEEC-----CCEEEEEEEECGGGEETTTTEETTSBSEEECGGGT-SCC----------CHHHHHHHHHHHHHHHHH
T ss_pred             ccccccCcCCCCCCccCchhhcccCCCCCccccccccccceeeeecc-cCc----------cHHHHHHHHHHHHHHHHh
Confidence            111                00110      1 126899999999999 432          455688999999999974

>2bry_A NEDD9 interacting protein with calponin homology and LIM domains; transport, coiled coil, cytoskeleton, FAD, flavoprotein, metal-binding, zinc; HET: FAD; 1.45A {Mus musculus} PDB: 2c4c_A* 2bra_A*

Probab=99.28  E-value=5.9e-13  Score=135.89  Aligned_cols=170  Identities=15%  Similarity=-0.033  Sum_probs=101.8

Q ss_pred             cccccccccccccccc---CCCCcccccc-cCCccccccccccc------------------ccccCCCCCCcEEEEcCc
Q 012165            3 SVSNSLSFKHGLSLWC---PQSPSLHRIR-HSSAKNFQRRGFVV------------------AYSSFANENREFVIVGGG   60 (469)
Q Consensus         3 ~~~~~~~~~~~~~~~~---~~~~~~~~~~-~~~~~~~~~~~~~~------------------~~~~~~~~~~~vvIIGgG   60 (469)
                      .++||||.+||++|++   .|...|.+.. .++.++.+.+....                  .........+||+|||||
T Consensus        22 ~~~~~~~~~~~rvc~~~~~l~~~~g~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dVvIVGgG  101 (497)
T 2bry_A           22 FETFVQAQLCQDVLSSFQGLCRALGVESGGGLSQYHKIKAQLNYWSAKSLWAKLDKRASQPVYQQGQACTNTKCLVVGAG  101 (497)
T ss_dssp             HHHHHHCCSHHHHHHHHHHHHHHHTCCTTCHHHHHHHHHHTCCSTTTHHHHHHHHHHHTSGGGGGGTTTTTCEEEEECCS
T ss_pred             HHhCCCHHHHHHHHHHHHHHHHHhCCCCCCCcEeehhhHHHHHHHHHHHhhhhhhhhhccccccCccccCCCCEEEECcc
Confidence            3689999999999998   7888888755 22333222221111                  111123457899999999


Q ss_pred             HHHHHHHHHHHHcCCCCCcEEEEcCCCCCCCCCC-CCccc---ccCCCCC--CCCCC--CCCccccCCCCCCCCHhHHHH
Q 012165           61 NAAGYAARTFVEHGMADGRLCIVSKEAYAPYERP-ALTKG---YLFPLDK--KPARL--PGFHTCVGSGGERQTPEWYKE  132 (469)
Q Consensus        61 ~AGl~aA~~L~~~g~~~~~V~vie~~~~~~~~~~-~l~~~---~~~~~~~--~~~~~--~~~~~~~~~~~~~~~~~~~~~  132 (469)
                      ++|+++|..|++.|.   +|+|||+.+..+..+. .+...   .+.....  ....+  ..+...........+.+.+++
T Consensus       102 ~aGl~aA~~La~~G~---~V~liEk~~~~g~~~~~~~~~~~~~~l~~~g~~~~~~~~~~~~~~~~~~~~l~~~L~~~~~~  178 (497)
T 2bry_A          102 PCGLRAAVELALLGA---RVVLVEKRIKFSRHNVLHLWPFTIHDLRALGAKKFYGRFCTGTLDHISIRQLQLLLLKVALL  178 (497)
T ss_dssp             HHHHHHHHHHHHTTC---EEEEEESCSSCCCCCEEECCHHHHHHHHTTTHHHHCTTTTCTTCCEEEHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHCCC---eEEEEEeccccCCCCcccCChhHHHHHHHcCCccccccccccccccCCHHHHHHHHHHHHHh
Confidence            999999999999987   8999999876432110 00000   0000000  00000  000000000001122344556


Q ss_pred             CCcEEEeCCcEEEEeCC-----CcEEEe--C-CC--eEEEeccEEeccCCCCC
Q 012165          133 KGIEMIYQDPVTSIDIE-----KQTLIT--N-SG--KLLKYGSLIVATGCTAS  175 (469)
Q Consensus       133 ~~i~~~~~~~v~~id~~-----~~~v~~--~-~g--~~~~yd~lVlAtG~~~~  175 (469)
                      .+++++.+++|+++..+     ...|++  . +|  .++.+|+||+|+|..+.
T Consensus       179 ~gv~v~~~~~v~~i~~~~~~~~~~~v~~~~~~~g~~~~i~ad~VV~A~G~~S~  231 (497)
T 2bry_A          179 LGVEIHWGVKFTGLQPPPRKGSGWRAQLQPNPPAQLASYEFDVLISAAGGKFV  231 (497)
T ss_dssp             TTCEEEESCEEEEEECCCSTTCCBEEEEESCCCHHHHTCCBSEEEECCCTTCC
T ss_pred             CCCEEEeCCEEEEEEEecCCCCEEEEEEEECCCCCEEEEEcCEEEECCCCCcc
Confidence            79999999999999763     236666  3 56  46899999999998764

>2ywl_A Thioredoxin reductase related protein; uncharacterized conserved protein, rossmann fold, structural genomics, NPPSFA; HET: FAD; 1.60A {Thermus thermophilus} PDB: 2cvj_A*

Probab=99.16  E-value=7e-11  Score=103.53  Aligned_cols=108  Identities=18%  Similarity=0.193  Sum_probs=74.1

Q ss_pred             CCcEEEEcCcHHHHHHHHHHHHcCCCCCcEEEEcCCCCCCCCCCCCcccccCCCCCCCCCCCCCc-cccCCCCCCCCHhH
Q 012165           51 NREFVIVGGGNAAGYAARTFVEHGMADGRLCIVSKEAYAPYERPALTKGYLFPLDKKPARLPGFH-TCVGSGGERQTPEW  129 (469)
Q Consensus        51 ~~~vvIIGgG~AGl~aA~~L~~~g~~~~~V~vie~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~  129 (469)
                      ++||+|||||++|+.+|..|++.|.   +|+|+|+.+........+            ..++++. ............+.
T Consensus         1 ~~~vvIIGgG~~Gl~~A~~l~~~g~---~v~lie~~~~~~~~~~~~------------~~~~~~~~~~~~~~~~~~l~~~   65 (180)
T 2ywl_A            1 MWDVIVVGGGPSGLSAALFLARAGL---KVLVLDGGRSKVKGVSRV------------PNYPGLLDEPSGEELLRRLEAH   65 (180)
T ss_dssp             CEEEEEECCSHHHHHHHHHHHHTTC---CEEEEECSCCTTTTCSCC------------CCSTTCTTCCCHHHHHHHHHHH
T ss_pred             CCeEEEECCCHHHHHHHHHHHHCCC---cEEEEeCCCCcccCchhh------------hccCCCcCCCCHHHHHHHHHHH
Confidence            3689999999999999999999987   799999887432110000            1111110 00000011233455


Q ss_pred             HHHCCcEEEeCCcEEEEeCCC--cEEEeCCCeEEEeccEEeccCCCCC
Q 012165          130 YKEKGIEMIYQDPVTSIDIEK--QTLITNSGKLLKYGSLIVATGCTAS  175 (469)
Q Consensus       130 ~~~~~i~~~~~~~v~~id~~~--~~v~~~~g~~~~yd~lVlAtG~~~~  175 (469)
                      +++.+++++.+ +|++++.++  ..+++++| ++++|+||+|+|..|.
T Consensus        66 ~~~~gv~v~~~-~v~~i~~~~~~~~v~~~~g-~i~ad~vI~A~G~~~~  111 (180)
T 2ywl_A           66 ARRYGAEVRPG-VVKGVRDMGGVFEVETEEG-VEKAERLLLCTHKDPT  111 (180)
T ss_dssp             HHHTTCEEEEC-CCCEEEECSSSEEEECSSC-EEEEEEEEECCTTCCH
T ss_pred             HHHcCCEEEeC-EEEEEEEcCCEEEEEECCC-EEEECEEEECCCCCCC
Confidence            67889999998 999997643  36777788 7999999999998873

>1rp0_A ARA6, thiazole biosynthetic enzyme; protein ligand complex, biosynthetic protein; HET: AHZ HTO; 1.60A {Arabidopsis thaliana} SCOP: c.3.1.6

Probab=99.13  E-value=2.7e-10  Score=107.52  Aligned_cols=112  Identities=16%  Similarity=0.202  Sum_probs=71.2

Q ss_pred             HHcCcEEEcCCeEEEEEeCCCCcEEEEEcC---------CC-----CEEeCCEEEEccCCccCCch-----hhhcC----
Q 012165          241 QQNGVKFVKGASIKNLEAGSDGRVAAVKLE---------DG-----STIDADTIVIGIGAKPTVSP-----FERVG----  297 (469)
Q Consensus       241 ~~~gV~~~~~~~v~~i~~~~~~~v~~v~~~---------~g-----~~i~~D~vi~a~G~~p~~~~-----~~~~g----  297 (469)
                      ++.||++++++.++++..+ ++.+.++.+.         +|     .++++|.||+|+|..++...     +...+    
T Consensus       131 ~~~gv~i~~~~~V~~i~~~-~~~v~gv~~~~~~~~~~~~~g~~g~~~~i~ad~VV~AtG~~s~~~~~~~~~~~~~g~~~~  209 (284)
T 1rp0_A          131 ARPNVKLFNAVAAEDLIVK-GNRVGGVVTNWALVAQNHHTQSCMDPNVMEAKIVVSSCGHDGPFGATGVKRLKSIGMIDH  209 (284)
T ss_dssp             TSTTEEEEETEEEEEEEEE-TTEEEEEEEEEHHHHTCTTTSSCCCCEEEEEEEEEECCCSSSTTTTHHHHHHHHTTSSSC
T ss_pred             hcCCCEEEcCcEEEEEEec-CCeEEEEEEeccccccccCccccCceEEEECCEEEECCCCchHHHHHHHHHhhhccCCCC
Confidence            3479999999999999854 4555556542         32     57999999999998876532     22222    


Q ss_pred             CcccCCCEEeCC-------CCCCCCCceEEeccccccCCccCCcccccchHHHHHHHHHHHHHHHhc
Q 012165          298 LNSSVGGIQVDG-------QFRTRMPGIFAIGDVAAFPLKMYDRTARVEHVDHARQSAQHCIKALLS  357 (469)
Q Consensus       298 l~~~~g~i~Vd~-------~~~t~~~~Vfa~GD~a~~~~~~~~~~~~~~~~~~A~~~a~~~a~~i~~  357 (469)
                      +... .++.+|.       +.+++.|++|++||++...   ++.......+..+..+|..+|.++..
T Consensus       210 v~~~-~g~~~~~~~~~~v~~~~~~~p~i~a~G~~~~~~---~g~~~~gp~~~~~~~sG~~~a~~i~~  272 (284)
T 1rp0_A          210 VPGM-KALDMNTAEDAIVRLTREVVPGMIVTGMEVAEI---DGAPRMGPTFGAMMISGQKAGQLALK  272 (284)
T ss_dssp             CCCC-EEECHHHHHHHHHHHCEEEETTEEECTHHHHHH---HTCEECCSCCHHHHHHHHHHHHHHHH
T ss_pred             cCCc-CCchhhhhhHHHhhccccccCCEEEEeeehhhh---cCCCCcChHHHHHHHhHHHHHHHHHH
Confidence            1111 2333332       3456789999999987431   11111112355677888999888875

>3k7m_X 6-hydroxy-L-nicotine oxidase; enantiomeric substrates, flavoenzymes, nicotine degradation, oxidoreductase; HET: FAD GP7; 1.95A {Arthrobacter nicotinovorans} PDB: 3k7q_X* 3ng7_X* 3ngc_X* 3nh3_X* 3nho_X* 3nk0_X* 3nk1_X* 3nk2_X* 3nn0_X* 3nn6_X* 3k7t_A*

Probab=99.12  E-value=3.6e-11  Score=120.56  Aligned_cols=89  Identities=17%  Similarity=0.275  Sum_probs=67.3

Q ss_pred             eeHHHHHHcCcEEEcCCeEEEEEeCCCCcEEEEEcCCCCEEeCCEEEEccC--------CccCCchhhh--cCCcccCCC
Q 012165          235 RYEQLYQQNGVKFVKGASIKNLEAGSDGRVAAVKLEDGSTIDADTIVIGIG--------AKPTVSPFER--VGLNSSVGG  304 (469)
Q Consensus       235 ~~~~~l~~~gV~~~~~~~v~~i~~~~~~~v~~v~~~~g~~i~~D~vi~a~G--------~~p~~~~~~~--~gl~~~~g~  304 (469)
                      .++..+++.| ++++++.|++|+..++ .+ .|.+.+|+++.+|.||+|+|        +.|+.+....  .+.......
T Consensus       209 l~~~~~~~~g-~i~~~~~V~~i~~~~~-~v-~v~~~~g~~~~ad~vi~a~~~~~l~~i~~~p~l~~~~~~~~~~~~~~~~  285 (431)
T 3k7m_X          209 LVDAMSQEIP-EIRLQTVVTGIDQSGD-VV-NVTVKDGHAFQAHSVIVATPMNTWRRIVFTPALPERRRSVIEEGHGGQG  285 (431)
T ss_dssp             HHHHHHTTCS-CEESSCCEEEEECSSS-SE-EEEETTSCCEEEEEEEECSCGGGGGGSEEESCCCHHHHHHHHHCCCCCE
T ss_pred             HHHHHHhhCC-ceEeCCEEEEEEEcCC-eE-EEEECCCCEEEeCEEEEecCcchHhheeeCCCCCHHHHHHHHhCCCcce
Confidence            3455566677 9999999999986543 34 47888998899999999999        8888765322  211122346


Q ss_pred             EEeCCCCCCCCCceEEeccccc
Q 012165          305 IQVDGQFRTRMPGIFAIGDVAA  326 (469)
Q Consensus       305 i~Vd~~~~t~~~~Vfa~GD~a~  326 (469)
                      ++|+..++|+.+++|+.||+..
T Consensus       286 ~kv~~~~~~~~~~i~~~~d~~~  307 (431)
T 3k7m_X          286 LKILIHVRGAEAGIECVGDGIF  307 (431)
T ss_dssp             EEEEEEEESCCTTEEEEBSSSS
T ss_pred             EEEEEEECCCCcCceEcCCCCE
Confidence            8999999999999999999843

>3pl8_A Pyranose 2-oxidase; substrate complex, H167A mutant, homotetramer, GMC oxidoredu PHBH fold, rossmann domain, oxidoreductase; HET: FAD MES G3F; 1.35A {Trametes ochracea} PDB: 2igo_A* 3lsm_A* 2ign_A* 3k4c_A* 1tt0_A* 2igk_A* 3k4b_A* 3lsk_A* 3bg6_A* 3lsh_A* 3lsi_A* 2igm_A* 3k4j_A* 3k4m_A* 3bg7_A* 3k4k_A* 3k4l_A* 3bly_A* 1tzl_A* 3fdy_A* ...

Probab=98.98  E-value=2.9e-12  Score=133.97  Aligned_cols=60  Identities=13%  Similarity=0.262  Sum_probs=46.8

Q ss_pred             HHHcCcEEEcCCeEEEEEeCCC-CcEEEEEcC---CCC--EEeCCEEEEccCCccCCchhhhcCCc
Q 012165          240 YQQNGVKFVKGASIKNLEAGSD-GRVAAVKLE---DGS--TIDADTIVIGIGAKPTVSPFERVGLN  299 (469)
Q Consensus       240 l~~~gV~~~~~~~v~~i~~~~~-~~v~~v~~~---~g~--~i~~D~vi~a~G~~p~~~~~~~~gl~  299 (469)
                      +++.||++++++.|++|..+++ +++.+|++.   +|+  ++.+|.||+|+|..++..+|..+|+.
T Consensus       270 ~~~~nv~v~~~~~V~~i~~~~~~~~v~GV~~~~~~~g~~~~i~A~~VIlaaG~~~s~~lL~~sgiG  335 (623)
T 3pl8_A          270 APEERFNLFPAVACERVVRNALNSEIESLHIHDLISGDRFEIKADVYVLTAGAVHNTQLLVNSGFG  335 (623)
T ss_dssp             EEEEEEEEECSEEEEEEEECTTSSCEEEEEEEETTTCCEEEECEEEEEECSCTTHHHHHHHTTTSS
T ss_pred             ccCCCEEEEeCCEEEEEEEECCCCEEEEEEEEEcCCCcEEEEECCEEEEcCCCcCCHHHHHhcCCC
Confidence            3445899999999999986533 367777775   354  68899999999999998887776653

>2cul_A Glucose-inhibited division protein A-related PROT probable oxidoreductase; rossmann fold, protein-FAD complex; HET: FAD; 1.65A {Thermus thermophilus} SCOP: c.3.1.7

Probab=98.92  E-value=1.9e-09  Score=98.57  Aligned_cols=117  Identities=15%  Similarity=0.165  Sum_probs=71.2

Q ss_pred             CCCcEEEEcCcHHHHHHHHHHHHcCCCCCcEEEEcCCCCCCCCCCCCcccccCCCCCCCCCC-CCCccccCC---CCCCC
Q 012165           50 ENREFVIVGGGNAAGYAARTFVEHGMADGRLCIVSKEAYAPYERPALTKGYLFPLDKKPARL-PGFHTCVGS---GGERQ  125 (469)
Q Consensus        50 ~~~~vvIIGgG~AGl~aA~~L~~~g~~~~~V~vie~~~~~~~~~~~l~~~~~~~~~~~~~~~-~~~~~~~~~---~~~~~  125 (469)
                      +++||+|||||++|+++|..|++.|.   +|+|||+...... .+ ... ......  ...+ ..+....+.   .....
T Consensus         2 ~~~dVvVVGgG~aGl~aA~~la~~g~---~v~lie~~~~~~G-~~-~~~-~~~~~~--~~~~~~~~~d~~g~~~~~~~~~   73 (232)
T 2cul_A            2 AAYQVLIVGAGFSGAETAFWLAQKGV---RVGLLTQSLDAVM-MP-FLP-PKPPFP--PGSLLERAYDPKDERVWAFHAR   73 (232)
T ss_dssp             CCCSEEEECCSHHHHHHHHHHHHTTC---CEEEEESCGGGTT-CC-SSC-CCSCCC--TTCHHHHHCCTTCCCHHHHHHH
T ss_pred             CCCCEEEECcCHHHHHHHHHHHHCCC---CEEEEecCCCcCC-cc-cCc-cccccc--hhhHHhhhccCCCCCHHHHHHH
Confidence            45899999999999999999999987   7999998732111 00 000 000000  0000 000000000   00011


Q ss_pred             CHhHHHHC-CcEEEeCCcEEEEeCCCc---EEEeCCCeEEEeccEEeccCCCCC
Q 012165          126 TPEWYKEK-GIEMIYQDPVTSIDIEKQ---TLITNSGKLLKYGSLIVATGCTAS  175 (469)
Q Consensus       126 ~~~~~~~~-~i~~~~~~~v~~id~~~~---~v~~~~g~~~~yd~lVlAtG~~~~  175 (469)
                      ..+.+++. +++++. ++|+++..++.   .|.+.+|+++.+|+||+|||....
T Consensus        74 l~~~~~~~~gv~i~~-~~v~~i~~~~~~v~~v~~~~g~~i~a~~VV~A~G~~s~  126 (232)
T 2cul_A           74 AKYLLEGLRPLHLFQ-ATATGLLLEGNRVVGVRTWEGPPARGEKVVLAVGSFLG  126 (232)
T ss_dssp             HHHHHHTCTTEEEEE-CCEEEEEEETTEEEEEEETTSCCEECSEEEECCTTCSS
T ss_pred             HHHHHHcCCCcEEEE-eEEEEEEEeCCEEEEEEECCCCEEECCEEEECCCCChh
Confidence            23445565 899885 69999876543   467788888999999999998654

>4dgk_A Phytoene dehydrogenase; the FAD/NAD(P)-binding rossmann fold, oxidoreductase; 2.35A {Pantoea ananatis}

Probab=98.91  E-value=3.2e-09  Score=108.47  Aligned_cols=52  Identities=23%  Similarity=0.360  Sum_probs=44.7

Q ss_pred             eeHHHHHHcCcEEEcCCeEEEEEeCCCCcEEEEEcCCCCEEeCCEEEEccCCc
Q 012165          235 RYEQLYQQNGVKFVKGASIKNLEAGSDGRVAAVKLEDGSTIDADTIVIGIGAK  287 (469)
Q Consensus       235 ~~~~~l~~~gV~~~~~~~v~~i~~~~~~~v~~v~~~~g~~i~~D~vi~a~G~~  287 (469)
                      .+.+.+++.|++|++++.|++|..+ ++++.+|+++||+++.+|.||++++..
T Consensus       226 aL~~~~~~~Gg~I~~~~~V~~I~~~-~~~~~gV~~~~g~~~~ad~VV~~a~~~  277 (501)
T 4dgk_A          226 GMIKLFQDLGGEVVLNARVSHMETT-GNKIEAVHLEDGRRFLTQAVASNADVV  277 (501)
T ss_dssp             HHHHHHHHTTCEEECSCCEEEEEEE-TTEEEEEEETTSCEEECSCEEECCC--
T ss_pred             HHHHHHHHhCCceeeecceeEEEee-CCeEEEEEecCCcEEEcCEEEECCCHH
Confidence            5667788999999999999999864 678889999999999999999987754

>3v76_A Flavoprotein; structural genomics, PSI-biology, NEW YORK structural genomi research consortium, nysgrc; HET: FDA; 2.51A {Sinorhizobium meliloti}

Probab=98.90  E-value=2.2e-09  Score=106.73  Aligned_cols=125  Identities=21%  Similarity=0.273  Sum_probs=72.9

Q ss_pred             cCCCCCCcEEEEcCcHHHHHHHHHHHHcCCCCCcEEEEcCCCCCCCC-------CCCCc------ccccCCCCCCC----
Q 012165           46 SFANENREFVIVGGGNAAGYAARTFVEHGMADGRLCIVSKEAYAPYE-------RPALT------KGYLFPLDKKP----  108 (469)
Q Consensus        46 ~~~~~~~~vvIIGgG~AGl~aA~~L~~~g~~~~~V~vie~~~~~~~~-------~~~l~------~~~~~~~~~~~----  108 (469)
                      +|++.++||+|||||+||+++|..|++.|.   +|+|+|+.+.....       +..+.      ..++.......    
T Consensus        22 ~M~~~~~dViIIGgG~AGl~aA~~La~~G~---~V~llEk~~~~g~~~~~sGgg~~n~t~~~~~~~~~~~~~~~~~~~~l   98 (417)
T 3v76_A           22 SMVAEKQDVVIIGAGAAGMMCAIEAGKRGR---RVLVIDHARAPGEKIRISGGGRCNFTNIHASPRNFLSGNPHFCKSAL   98 (417)
T ss_dssp             ------CCEEEECCSHHHHHHHHHHHHTTC---CEEEECSSSSSCHHHHHSGGGTCEEEETTCSGGGEEESSTTTTHHHH
T ss_pred             cccCCCCCEEEECcCHHHHHHHHHHHHCCC---cEEEEeCCCCCCceeEEcCCCceeccCCCCCHHHHhhcCHHHHHHHH
Confidence            345667899999999999999999999987   79999998754210       00000      00000000000    


Q ss_pred             --------------------CCCCCCccccC--CCCCCCCHhHHHHCCcEEEeCCcEEEEeCCCc--EEEeCCCeEEEec
Q 012165          109 --------------------ARLPGFHTCVG--SGGERQTPEWYKEKGIEMIYQDPVTSIDIEKQ--TLITNSGKLLKYG  164 (469)
Q Consensus       109 --------------------~~~~~~~~~~~--~~~~~~~~~~~~~~~i~~~~~~~v~~id~~~~--~v~~~~g~~~~yd  164 (469)
                                          ..-.+......  ......+.+.+++.|++++.+++|+++..++.  .|.+.+| ++.+|
T Consensus        99 ~~~~~~~~~~~~~~~Gi~~~~~~~g~~~~~~~~~~l~~~L~~~l~~~Gv~i~~~~~V~~i~~~~~~~~V~~~~g-~i~ad  177 (417)
T 3v76_A           99 ARYRPQDFVALVERHGIGWHEKTLGQLFCDHSAKDIIRMLMAEMKEAGVQLRLETSIGEVERTASGFRVTTSAG-TVDAA  177 (417)
T ss_dssp             HHSCHHHHHHHHHHTTCCEEECSTTEEEESSCHHHHHHHHHHHHHHHTCEEECSCCEEEEEEETTEEEEEETTE-EEEES
T ss_pred             HhcCHHHHHHHHHHcCCCcEEeeCCEEeeCCCHHHHHHHHHHHHHHCCCEEEECCEEEEEEEeCCEEEEEECCc-EEEee
Confidence                                00000000000  00001122345567999999999999976544  5677777 79999


Q ss_pred             cEEeccCCCC
Q 012165          165 SLIVATGCTA  174 (469)
Q Consensus       165 ~lVlAtG~~~  174 (469)
                      +||+|||..+
T Consensus       178 ~VIlAtG~~S  187 (417)
T 3v76_A          178 SLVVASGGKS  187 (417)
T ss_dssp             EEEECCCCSS
T ss_pred             EEEECCCCcc
Confidence            9999999875

>3alj_A 2-methyl-3-hydroxypyridine-5-carboxylic acid OXYG; alpha/beta fold, oxidoreductase; HET: FAD; 1.48A {Mesorhizobium loti} PDB: 3alh_A* 3ali_A* 3gmb_A* 3gmc_A* 3alk_A* 3alm_A* 3all_A*

Probab=98.87  E-value=2.2e-09  Score=105.62  Aligned_cols=121  Identities=17%  Similarity=0.184  Sum_probs=76.2

Q ss_pred             CCCcEEEEcCcHHHHHHHHHHHHcCCCCCcEEEEcCCCCCCCCCCCC---------------cccccCCCCCCCC-----
Q 012165           50 ENREFVIVGGGNAAGYAARTFVEHGMADGRLCIVSKEAYAPYERPAL---------------TKGYLFPLDKKPA-----  109 (469)
Q Consensus        50 ~~~~vvIIGgG~AGl~aA~~L~~~g~~~~~V~vie~~~~~~~~~~~l---------------~~~~~~~~~~~~~-----  109 (469)
                      +++||+|||||++|+++|..|++.|.   +|+|+|+.+........+               ...+.. ......     
T Consensus        10 ~~~dVvIVGaG~aGl~~A~~L~~~G~---~v~viE~~~~~~~~~~~~~l~~~~~~~l~~~g~~~~~~~-~~~~~~~~~~~   85 (379)
T 3alj_A           10 KTRRAEVAGGGFAGLTAAIALKQNGW---DVRLHEKSSELRAFGAGIYLWHNGLRVLEGLGALDDVLQ-GSHTPPTYETW   85 (379)
T ss_dssp             -CCEEEEECCSHHHHHHHHHHHHTTC---EEEEECSSSSCCCCSSEEEEEHHHHHHHHHTTCHHHHHT-TCBCCSCEEEE
T ss_pred             CCCeEEEECCCHHHHHHHHHHHHCCC---CEEEEecCCCCCCCCceEEeCccHHHHHHHcCCHHHHHh-hCCCccceEEE
Confidence            45899999999999999999999987   799999987643210000               000000 000000     


Q ss_pred             -------CCC--CCc--cccCCCCCCCCHhHHHHCCcEEEeCCcEEEEeCCCcEEEeCCCeEEEeccEEeccCCCCC
Q 012165          110 -------RLP--GFH--TCVGSGGERQTPEWYKEKGIEMIYQDPVTSIDIEKQTLITNSGKLLKYGSLIVATGCTAS  175 (469)
Q Consensus       110 -------~~~--~~~--~~~~~~~~~~~~~~~~~~~i~~~~~~~v~~id~~~~~v~~~~g~~~~yd~lVlAtG~~~~  175 (469)
                             .++  +..  ..........+.+.+.+.|++++.+++|++++.++ .|++.+|+++.+|.||.|+|....
T Consensus        86 ~~g~~~~~~~~~~~~~~~~~r~~l~~~L~~~~~~~gv~i~~~~~v~~i~~~~-~v~~~~g~~~~ad~vV~AdG~~s~  161 (379)
T 3alj_A           86 MHNKSVSKETFNGLPWRIMTRSHLHDALVNRARALGVDISVNSEAVAADPVG-RLTLQTGEVLEADLIVGADGVGSK  161 (379)
T ss_dssp             ETTEEEEEECGGGCCEEEEEHHHHHHHHHHHHHHTTCEEESSCCEEEEETTT-EEEETTSCEEECSEEEECCCTTCH
T ss_pred             eCCceeeeccCCCCceEEECHHHHHHHHHHHHHhcCCEEEeCCEEEEEEeCC-EEEECCCCEEEcCEEEECCCccHH
Confidence                   000  000  00000000112234556799999999999998766 888989989999999999998753

>3ces_A MNMG, tRNA uridine 5-carboxymethylaminomethyl modificat GIDA, GIDA; tRNA modification, FAD binding domain, structural genomics; 2.41A {Escherichia coli} PDB: 3cp2_A 3g05_A

Probab=98.86  E-value=4.9e-09  Score=108.29  Aligned_cols=157  Identities=13%  Similarity=0.133  Sum_probs=88.0

Q ss_pred             CCCcEEEEcCcHHHHHHHHHHHHcCCCCCcEEEEcCCCC-CCCCCCCCcccccC---------CCCCC-----------C
Q 012165           50 ENREFVIVGGGNAAGYAARTFVEHGMADGRLCIVSKEAY-APYERPALTKGYLF---------PLDKK-----------P  108 (469)
Q Consensus        50 ~~~~vvIIGgG~AGl~aA~~L~~~g~~~~~V~vie~~~~-~~~~~~~l~~~~~~---------~~~~~-----------~  108 (469)
                      ..+||+|||||+||++||..|++.|.   +|+|||+.+. .+...+..+.+...         .....           .
T Consensus        27 ~~yDVIVIGgG~AGl~AAlaLAr~G~---kVlLIEk~~~~iG~~~Cnps~ggia~~~lv~ei~algg~~~~~~d~~gi~f  103 (651)
T 3ces_A           27 DPFDVIIIGGGHAGTEAAMAAARMGQ---QTLLLTHNIDTLGQMSCNPAIGGIGKGHLVKEVDALGGLMAKAIDQAGIQF  103 (651)
T ss_dssp             SCEEEEEECCSHHHHHHHHHHHHTTC---CEEEEESCGGGTTCCSSSSEEESTTHHHHHHHHHHTTCSHHHHHHHHEEEE
T ss_pred             CcCCEEEECChHHHHHHHHHHHhCCC---CEEEEeecccccccccccccccchhhHHHHHHHHHhccHHHHHhhhcccch
Confidence            45899999999999999999999987   7999998742 22111111110000         00000           0


Q ss_pred             -----CCCCCCcc----ccCCCCCCCCHhHHHH-CCcEEEeCCcEEEEeCCCc---EEEeCCCeEEEeccEEeccCCCCC
Q 012165          109 -----ARLPGFHT----CVGSGGERQTPEWYKE-KGIEMIYQDPVTSIDIEKQ---TLITNSGKLLKYGSLIVATGCTAS  175 (469)
Q Consensus       109 -----~~~~~~~~----~~~~~~~~~~~~~~~~-~~i~~~~~~~v~~id~~~~---~v~~~~g~~~~yd~lVlAtG~~~~  175 (469)
                           ..-+....    ...........+.+++ .|++++ +++|+.+..++.   .|.+.+|.++.+|.||+|||+.+.
T Consensus       104 ~~l~~~kgpav~~~r~~~Dr~~~~~~L~e~Le~~~GV~I~-~~~V~~L~~e~g~V~GV~t~dG~~I~Ad~VVLATGt~s~  182 (651)
T 3ces_A          104 RILNASKGPAVRATRAQADRVLYRQAVRTALENQPNLMIF-QQAVEDLIVENDRVVGAVTQMGLKFRAKAVVLTVGTFLD  182 (651)
T ss_dssp             EEESTTSCGGGCEEEEEECHHHHHHHHHHHHHTCTTEEEE-ECCEEEEEESSSBEEEEEETTSEEEEEEEEEECCSTTTC
T ss_pred             hhhhcccCcccccchhhCCHHHHHHHHHHHHHhCCCCEEE-EEEEEEEEecCCEEEEEEECCCCEEECCEEEEcCCCCcc
Confidence                 00000000    0000000011233445 589985 469999975543   467788888999999999998865


Q ss_pred             cCCCCCCCCcCcEEEecCHHHHHHHHHhhhcCCeEEEEcCChHHHHHHHHHHhCCCeEe
Q 012165          176 RFPEKIGGYLPGVHYIRDVADADALISSLEKAKKVVVVGGGYIGMEVAAAAVGWKLDTT  234 (469)
Q Consensus       176 ~~~~~~g~~~~~v~~~~~~~~~~~~~~~~~~~~~vvVvG~G~~g~e~A~~l~~~g~~v~  234 (469)
                      . +.+     +|....              .+.+   +| |.++++++..|.++|.+++
T Consensus       183 ~-~~i-----~G~~~~--------------~~gr---iG-g~~a~eLA~~L~~lG~~v~  217 (651)
T 3ces_A          183 G-KIH-----IGLDNY--------------SGGR---AG-DPPSIPLSRRLRELPLRVG  217 (651)
T ss_dssp             C-EEE-----CC-------------------------------CCHHHHHHHTTTCCEE
T ss_pred             C-ccc-----cCcccC--------------CCCC---cc-chhhhHHHHHHHhcCCeEE
Confidence            3 222     222111              1222   46 7889999999999998876

>3nlc_A Uncharacterized protein VP0956; FAD-binding protein, NESG, structural genomics, PSI-2, prote structure initiative; HET: FAD; 2.15A {Vibrio parahaemolyticus}

Probab=98.80  E-value=9.4e-09  Score=105.23  Aligned_cols=124  Identities=17%  Similarity=0.214  Sum_probs=75.9

Q ss_pred             CCCCcEEEEcCcHHHHHHHHHHHHcCCCCCcEEEEcCCCCCC--------------CCC---CCCc--ccccCCCCCCCC
Q 012165           49 NENREFVIVGGGNAAGYAARTFVEHGMADGRLCIVSKEAYAP--------------YER---PALT--KGYLFPLDKKPA  109 (469)
Q Consensus        49 ~~~~~vvIIGgG~AGl~aA~~L~~~g~~~~~V~vie~~~~~~--------------~~~---~~l~--~~~~~~~~~~~~  109 (469)
                      ...+||+|||||++|+++|..|++.|+   +|+|+|+.+...              +..   ..+.  ....+.......
T Consensus       105 ~~~~DVVIVGgGpaGL~aA~~La~~G~---kV~VlEr~~~~~~R~~~~~g~w~~~~~~~~~~i~~g~gGag~~sdgkl~~  181 (549)
T 3nlc_A          105 NLTERPIVIGFGPCGLFAGLVLAQMGF---NPIIVERGKEVRERTKDTFGFWRKRTLNPESNVQFGEGGAGTFSDGKLYS  181 (549)
T ss_dssp             TCCCCCEEECCSHHHHHHHHHHHHTTC---CCEEECSSCCHHHHHHHHHHHHHHCCCCTTSSSSSSTTGGGTTSCCCCCC
T ss_pred             CCCCCEEEECcCHHHHHHHHHHHHCCC---eEEEEEccCcccccccchhcccccccccccccceeccCCcccccCCceEE
Confidence            445899999999999999999999987   799999985320              000   0000  000000000000


Q ss_pred             CCC--CC--------------c-ccc-------C----CCCCCCCHhHHHHCCcEEEeCCcEEEEeCCCc---EEEeCCC
Q 012165          110 RLP--GF--------------H-TCV-------G----SGGERQTPEWYKEKGIEMIYQDPVTSIDIEKQ---TLITNSG  158 (469)
Q Consensus       110 ~~~--~~--------------~-~~~-------~----~~~~~~~~~~~~~~~i~~~~~~~v~~id~~~~---~v~~~~g  158 (469)
                      .+.  .+              . ...       +    ......+.+.+++.|++++.+++|+++..++.   .|++.+|
T Consensus       182 ~i~~~~~~~~~v~~~~~~~G~~~~i~~~~~p~~G~~~~~~l~~~L~~~l~~~Gv~I~~~t~V~~I~~~~~~v~gV~l~~G  261 (549)
T 3nlc_A          182 QVKDPNFYGRKVITEFVEAGAPEEILYVSKPHIGTFKLVTMIEKMRATIIELGGEIRFSTRVDDLHMEDGQITGVTLSNG  261 (549)
T ss_dssp             CSCCTTCHHHHHHHHHHHTTCCGGGGTBSSCCCCHHHHHHHHHHHHHHHHHTTCEEESSCCEEEEEESSSBEEEEEETTS
T ss_pred             EeccccccHHHHHHHHHHcCCCceEeeccccccccchHHHHHHHHHHHHHhcCCEEEeCCEEEEEEEeCCEEEEEEECCC
Confidence            000  00              0 000       0    00001122334667999999999999977653   4778899


Q ss_pred             eEEEeccEEeccCCCCC
Q 012165          159 KLLKYGSLIVATGCTAS  175 (469)
Q Consensus       159 ~~~~yd~lVlAtG~~~~  175 (469)
                      +++.+|+||+|+|..++
T Consensus       262 ~~i~Ad~VVlA~G~~s~  278 (549)
T 3nlc_A          262 EEIKSRHVVLAVGHSAR  278 (549)
T ss_dssp             CEEECSCEEECCCTTCH
T ss_pred             CEEECCEEEECCCCChh
Confidence            89999999999998763

>2i0z_A NAD(FAD)-utilizing dehydrogenases; structural genomics, PSI-2, protein structure initiative, midwest center for structural genomics, MCSG; HET: FAD; 1.84A {Bacillus cereus} SCOP: c.3.1.8 e.74.1.1

Probab=98.78  E-value=8.1e-09  Score=103.90  Aligned_cols=124  Identities=19%  Similarity=0.298  Sum_probs=74.3

Q ss_pred             CCCCCcEEEEcCcHHHHHHHHHHHHcCCCCCcEEEEcCCCCCCC-------CCCCCcc-----ccc--CCCCCCCC----
Q 012165           48 ANENREFVIVGGGNAAGYAARTFVEHGMADGRLCIVSKEAYAPY-------ERPALTK-----GYL--FPLDKKPA----  109 (469)
Q Consensus        48 ~~~~~~vvIIGgG~AGl~aA~~L~~~g~~~~~V~vie~~~~~~~-------~~~~l~~-----~~~--~~~~~~~~----  109 (469)
                      ..+++||+|||||+||+++|..|++.|.   +|+|+|+.+....       .+..+..     .++  ........    
T Consensus        23 ~~~~~dVvIIGgG~aGl~aA~~la~~G~---~V~llEk~~~~g~~~~~sg~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~   99 (447)
T 2i0z_A           23 NAMHYDVIVIGGGPSGLMAAIGAAEEGA---NVLLLDKGNKLGRKLAISGGGRCNVTNRLPLDEIVKHIPGNGRFLYSAF   99 (447)
T ss_dssp             --CCCSEEEECCSHHHHHHHHHHHHTTC---CEEEECSSSSSCHHHHHTGGGTCCCEECSCHHHHHHTCTBTGGGGHHHH
T ss_pred             ccCCCCEEEECCcHHHHHHHHHHHHCCC---CEEEEECCCCCCceeEEeCCCceeccCcccHHHHHHHhccChHHHHHHH
Confidence            3456899999999999999999999987   7999999865320       0000000     000  00000000    


Q ss_pred             -CC-----------CCCcc---ccC---------CCCCCCCHhHHHHCCcEEEeCCcEEEEeCCCc---EEEeCCCeEEE
Q 012165          110 -RL-----------PGFHT---CVG---------SGGERQTPEWYKEKGIEMIYQDPVTSIDIEKQ---TLITNSGKLLK  162 (469)
Q Consensus       110 -~~-----------~~~~~---~~~---------~~~~~~~~~~~~~~~i~~~~~~~v~~id~~~~---~v~~~~g~~~~  162 (469)
                       .+           .+...   ..+         ......+.+.+++.|++++.+++|+++..++.   .|++.+|+++.
T Consensus       100 ~~~~~~~~~~~~~~~G~~~~~~~~g~~~p~~~~~~~l~~~L~~~~~~~GV~i~~~~~V~~i~~~~~~v~~V~~~~G~~i~  179 (447)
T 2i0z_A          100 SIFNNEDIITFFENLGVKLKEEDHGRMFPVSNKAQSVVDALLTRLKDLGVKIRTNTPVETIEYENGQTKAVILQTGEVLE  179 (447)
T ss_dssp             HHSCHHHHHHHHHHTTCCEEECGGGEEEETTCCHHHHHHHHHHHHHHTTCEEECSCCEEEEEEETTEEEEEEETTCCEEE
T ss_pred             HhcCHHHHHHHHHhcCCceEEeeCCEEECCCCCHHHHHHHHHHHHHHCCCEEEeCcEEEEEEecCCcEEEEEECCCCEEE
Confidence             00           00000   000         00001122345667999999999999975443   47778887799


Q ss_pred             eccEEeccCCCC
Q 012165          163 YGSLIVATGCTA  174 (469)
Q Consensus       163 yd~lVlAtG~~~  174 (469)
                      +|.||+|||...
T Consensus       180 Ad~VVlAtGg~s  191 (447)
T 2i0z_A          180 TNHVVIAVGGKS  191 (447)
T ss_dssp             CSCEEECCCCSS
T ss_pred             CCEEEECCCCCc
Confidence            999999999876

>2e4g_A Tryptophan halogenase; flavin-binding, rebeccamycin biosynthesis, biosynthetic protein, flavoprotein; HET: TRP; 2.08A {Lechevalieria aerocolonigenes} PDB: 2o9z_A 2oa1_A* 2oal_A* 2oam_A

Probab=98.72  E-value=4.1e-08  Score=101.39  Aligned_cols=54  Identities=20%  Similarity=0.400  Sum_probs=44.9

Q ss_pred             eeHHHHHHc-CcEEEcCCeEEEEEeCCCCcEEEEEcCCCCEEeCCEEEEccCCccC
Q 012165          235 RYEQLYQQN-GVKFVKGASIKNLEAGSDGRVAAVKLEDGSTIDADTIVIGIGAKPT  289 (469)
Q Consensus       235 ~~~~~l~~~-gV~~~~~~~v~~i~~~~~~~v~~v~~~~g~~i~~D~vi~a~G~~p~  289 (469)
                      .+.+.+++. ||+++.+ +|++++.++++.+..|.+.+|+++.+|.||.|+|....
T Consensus       199 ~L~~~~~~~~Gv~i~~~-~V~~i~~~~~g~~~~v~~~~G~~i~ad~vI~A~G~~S~  253 (550)
T 2e4g_A          199 FLRRFATEKLGVRHVED-RVEHVQRDANGNIESVRTATGRVFDADLFVDCSGFRGL  253 (550)
T ss_dssp             HHHHHHHHHSCCEEEEC-CEEEEEECTTSCEEEEEETTSCEEECSEEEECCGGGCC
T ss_pred             HHHHHHHhcCCcEEEEC-eEeEEEEcCCCCEEEEEECCCCEEECCEEEECCCCchh
Confidence            345566677 9999999 99999876567677888999988999999999998765

>2x3n_A Probable FAD-dependent monooxygenase; oxidoreductase; HET: FAD; 1.75A {Pseudomonas aeruginosa}

Probab=98.71  E-value=1.4e-08  Score=100.50  Aligned_cols=122  Identities=14%  Similarity=0.194  Sum_probs=72.5

Q ss_pred             CCCcEEEEcCcHHHHHHHHHHHHcCCCCCcEEEEcCCCCCCCCCCCC--c-------------ccc------------cC
Q 012165           50 ENREFVIVGGGNAAGYAARTFVEHGMADGRLCIVSKEAYAPYERPAL--T-------------KGY------------LF  102 (469)
Q Consensus        50 ~~~~vvIIGgG~AGl~aA~~L~~~g~~~~~V~vie~~~~~~~~~~~l--~-------------~~~------------~~  102 (469)
                      .++||+|||||++|+++|..|++.|+   +|+|+|+.+.........  .             ..+            +.
T Consensus         5 ~~~dVvIVGaG~aGl~~A~~L~~~G~---~V~viE~~~~~~~~~~~~~l~~~~~~~l~~~g~~~~~~~~~~~~~~~~~~~   81 (399)
T 2x3n_A            5 NHIDVLINGCGIGGAMLAYLLGRQGH---RVVVVEQARRERAINGADLLKPAGIRVVEAAGLLAEVTRRGGRVRHELEVY   81 (399)
T ss_dssp             CEEEEEEECCSHHHHHHHHHHHHTTC---CEEEECSSCCC---CCCCEECHHHHHHHHHTTCHHHHHHTTCEEECEEEEE
T ss_pred             CcCCEEEECcCHHHHHHHHHHHhCCC---cEEEEeCCCCCCccCceeeECchHHHHHHHcCcHHHHHHhCCCcceeEEEe
Confidence            35799999999999999999999987   799999986541110000  0             000            00


Q ss_pred             CCCCCCCCCC--CC-----ccccC-CCCCCCCHhHHHHC-CcEEEeCCcEEEEeCCCc----EEEeCCCeEEEeccEEec
Q 012165          103 PLDKKPARLP--GF-----HTCVG-SGGERQTPEWYKEK-GIEMIYQDPVTSIDIEKQ----TLITNSGKLLKYGSLIVA  169 (469)
Q Consensus       103 ~~~~~~~~~~--~~-----~~~~~-~~~~~~~~~~~~~~-~i~~~~~~~v~~id~~~~----~v~~~~g~~~~yd~lVlA  169 (469)
                      ........++  ..     ..... ......+.+.+++. |++++.+++|++++.++.    .|++.+|+++.+|.||.|
T Consensus        82 ~~g~~~~~~~~~~~~~~~~~~~~~r~~l~~~L~~~~~~~~gv~i~~~~~v~~i~~~~~~v~g~v~~~~g~~~~ad~vV~A  161 (399)
T 2x3n_A           82 HDGELLRYFNYSSVDARGYFILMPCESLRRLVLEKIDGEATVEMLFETRIEAVQRDERHAIDQVRLNDGRVLRPRVVVGA  161 (399)
T ss_dssp             ETTEEEEEEETTSSCGGGCEEECCHHHHHHHHHHHHTTCTTEEEECSCCEEEEEECTTSCEEEEEETTSCEEEEEEEEEC
T ss_pred             CCCCEEEecchHHhcccCccccccHHHHHHHHHHHhhhcCCcEEEcCCEEEEEEEcCCceEEEEEECCCCEEECCEEEEC
Confidence            0000000000  00     00000 00000111223344 899999999999976543    678888888999999999


Q ss_pred             cCCCC
Q 012165          170 TGCTA  174 (469)
Q Consensus       170 tG~~~  174 (469)
                      +|...
T Consensus       162 dG~~s  166 (399)
T 2x3n_A          162 DGIAS  166 (399)
T ss_dssp             CCTTC
T ss_pred             CCCCh
Confidence            99764

>1d4d_A Flavocytochrome C fumarate reductase; oxidoreductase; HET: HEM FAD; 2.50A {Shewanella oneidensis} SCOP: a.138.1.3 c.3.1.4 d.168.1.1 PDB: 1d4e_A* 1d4c_A*

Probab=98.71  E-value=3.3e-08  Score=102.51  Aligned_cols=38  Identities=29%  Similarity=0.427  Sum_probs=33.7

Q ss_pred             CCCcEEEEcCcHHHHHHHHHHHHcCCCCCcEEEEcCCCCCC
Q 012165           50 ENREFVIVGGGNAAGYAARTFVEHGMADGRLCIVSKEAYAP   90 (469)
Q Consensus        50 ~~~~vvIIGgG~AGl~aA~~L~~~g~~~~~V~vie~~~~~~   90 (469)
                      ..+||+|||+|+||+++|..|++.|.   +|+|+|+.+...
T Consensus       125 ~~~~v~viG~G~aG~~aa~~~~~~g~---~v~~~e~~~~~~  162 (572)
T 1d4d_A          125 ETTDVVIIGSGGAGLAAAVSARDAGA---KVILLEKEPIPG  162 (572)
T ss_dssp             EECSEEEECCSHHHHHHHHHHHSSSC---CEEEECSSSSSC
T ss_pred             CCCCEEEECCCHHHHHHHHHHHHCCC---cEEEEecCCCCC
Confidence            35799999999999999999999987   799999987543

>3dme_A Conserved exported protein; structural genomics, PSI-2, PROT structure initiative, northeast structural genomics consort NESG; HET: FAD TLA; 1.70A {Bordetella pertussis}

Probab=98.70  E-value=3.5e-08  Score=96.22  Aligned_cols=47  Identities=19%  Similarity=0.235  Sum_probs=37.7

Q ss_pred             hHHHHCCcEEEeCCcEEEEeCCC---cEEEeCCC--eEEEeccEEeccCCCC
Q 012165          128 EWYKEKGIEMIYQDPVTSIDIEK---QTLITNSG--KLLKYGSLIVATGCTA  174 (469)
Q Consensus       128 ~~~~~~~i~~~~~~~v~~id~~~---~~v~~~~g--~~~~yd~lVlAtG~~~  174 (469)
                      +.+++.|++++.+++|+++..++   ..|.+.+|  .++.+|+||+|+|...
T Consensus       158 ~~~~~~Gv~i~~~~~v~~i~~~~~~~~~v~~~~g~~~~~~a~~VV~A~G~~s  209 (369)
T 3dme_A          158 GDAESDGAQLVFHTPLIAGRVRPEGGFELDFGGAEPMTLSCRVLINAAGLHA  209 (369)
T ss_dssp             HHHHHTTCEEECSCCEEEEEECTTSSEEEEECTTSCEEEEEEEEEECCGGGH
T ss_pred             HHHHHCCCEEECCCEEEEEEEcCCceEEEEECCCceeEEEeCEEEECCCcch
Confidence            34567899999999999998753   35777777  4799999999999764

>3nix_A Flavoprotein/dehydrogenase; structural genomics, PSI-2, NES protein structure initiative, northeast structural genomics consortium; HET: FAD; 2.60A {Cytophaga hutchinsonii}

Probab=98.69  E-value=1.7e-08  Score=100.62  Aligned_cols=122  Identities=19%  Similarity=0.238  Sum_probs=72.1

Q ss_pred             CCCcEEEEcCcHHHHHHHHHHHHcCCCCCcEEEEcCCCCCCCCCC-CCccc---ccC-----------------------
Q 012165           50 ENREFVIVGGGNAAGYAARTFVEHGMADGRLCIVSKEAYAPYERP-ALTKG---YLF-----------------------  102 (469)
Q Consensus        50 ~~~~vvIIGgG~AGl~aA~~L~~~g~~~~~V~vie~~~~~~~~~~-~l~~~---~~~-----------------------  102 (469)
                      +.+||+|||||++|+++|..|++.|+   +|+|+|+.+...+..- .+...   .+.                       
T Consensus         4 ~~~dVvIIGgG~aGl~~A~~La~~G~---~V~v~E~~~~~~~~~g~~~~~~~~~~l~~~g~~~~~~~~~~~~~~~~~~~~   80 (421)
T 3nix_A            4 EKVDVLVIGAGPAGTVAASLVNKSGF---KVKIVEKQKFPRFVIGESLLPRCMEHLDEAGFLDAVKAQGFQQKFGAKFVR   80 (421)
T ss_dssp             CEEEEEEECCSHHHHHHHHHHHTTTC---CEEEECSSCSSCCCSCCBCCGGGHHHHHHTTCHHHHHHTTCEEECEEEEEE
T ss_pred             ccCcEEEECCCHHHHHHHHHHHhCCC---CEEEEeCCCCCCCcccCcccHhHHHHHHHcCChHHHHHcCCcccCCcEEEe
Confidence            44799999999999999999999987   7999999864322110 00000   000                       


Q ss_pred             CCCCCCCCCC-------CCccccC-CCCCCCCHhHHHHCCcEEEeCCcEEEEeCCCc----EEEeCCCe--EEEeccEEe
Q 012165          103 PLDKKPARLP-------GFHTCVG-SGGERQTPEWYKEKGIEMIYQDPVTSIDIEKQ----TLITNSGK--LLKYGSLIV  168 (469)
Q Consensus       103 ~~~~~~~~~~-------~~~~~~~-~~~~~~~~~~~~~~~i~~~~~~~v~~id~~~~----~v~~~~g~--~~~yd~lVl  168 (469)
                      ........+.       ....... ..+...+.+.+++.|++++.+++|++++.++.    .+.+.+|+  ++.+|.||.
T Consensus        81 ~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~L~~~a~~~gv~i~~~~~v~~i~~~~~~~~v~v~~~~g~~~~~~a~~vV~  160 (421)
T 3nix_A           81 GKEIADFNFSDQFSNGWNWTWQVPRGNFDKTLADEAARQGVDVEYEVGVTDIKFFGTDSVTTIEDINGNKREIEARFIID  160 (421)
T ss_dssp             TTEEEEEETTSCSSCSCCCEEECCHHHHHHHHHHHHHHHTCEEECSEEEEEEEEETTEEEEEEEETTSCEEEEEEEEEEE
T ss_pred             CCeeEEEeehhhcCCCCCceeEECHHHHHHHHHHHHHhCCCEEEcCCEEEEEEEeCCEEEEEEEcCCCCEEEEEcCEEEE
Confidence            0000000000       0000000 00000112334456999999999999976543    34557787  699999999


Q ss_pred             ccCCCC
Q 012165          169 ATGCTA  174 (469)
Q Consensus       169 AtG~~~  174 (469)
                      |+|...
T Consensus       161 A~G~~s  166 (421)
T 3nix_A          161 ASGYGR  166 (421)
T ss_dssp             CCGGGC
T ss_pred             CCCCch
Confidence            999764

>3fmw_A Oxygenase; mithramycin, baeyer-villiger, flavin binding protein, oxidoreductase; HET: FAD; 2.89A {Streptomyces argillaceus}

Probab=98.69  E-value=2.7e-08  Score=102.99  Aligned_cols=123  Identities=18%  Similarity=0.172  Sum_probs=71.4

Q ss_pred             CCCCcEEEEcCcHHHHHHHHHHHHcCCCCCcEEEEcCCCCCCCCC---------------CCCcccccCCCCCCCCC-CC
Q 012165           49 NENREFVIVGGGNAAGYAARTFVEHGMADGRLCIVSKEAYAPYER---------------PALTKGYLFPLDKKPAR-LP  112 (469)
Q Consensus        49 ~~~~~vvIIGgG~AGl~aA~~L~~~g~~~~~V~vie~~~~~~~~~---------------~~l~~~~~~~~~~~~~~-~~  112 (469)
                      .+.+||+|||||++|+++|..|++.|+   +|+|||+.+......               ..+...+.......... +.
T Consensus        47 ~~~~DVvIVGaG~aGL~~A~~La~~G~---~V~VlEr~~~~~~~~r~~~l~~~s~~~l~~lGl~~~l~~~~~~~~~~~~~  123 (570)
T 3fmw_A           47 ALTTDVVVVGGGPVGLMLAGELRAGGV---GALVLEKLVEPVGHDRAGALHIRTVETLDLRGLLDRFLEGTQVAKGLPFA  123 (570)
T ss_dssp             ----CEEEECCSHHHHHHHHHHHHTTC---CEEEEBSCSSCCCSSSCCCBCHHHHHHHHTTTCHHHHTTSCCBCSBCCBT
T ss_pred             CCCCCEEEECcCHHHHHHHHHHHHCCC---CEEEEcCCCCCCCCceEEEECHHHHHHHHHcCChHHHHhcCcccCCceeC
Confidence            346899999999999999999999998   799999976542110               00000000000000000 00


Q ss_pred             C-----Ccc-ccCCC--C---------CCCCHhHHHHCCcEEEeCCcEEEEeCCCc--EEEe--CCC-eEEEeccEEecc
Q 012165          113 G-----FHT-CVGSG--G---------ERQTPEWYKEKGIEMIYQDPVTSIDIEKQ--TLIT--NSG-KLLKYGSLIVAT  170 (469)
Q Consensus       113 ~-----~~~-~~~~~--~---------~~~~~~~~~~~~i~~~~~~~v~~id~~~~--~v~~--~~g-~~~~yd~lVlAt  170 (469)
                      +     +.. .....  .         ...+.+.+++.|++++.+++|++++.+..  +|++  .+| +++.+|+||.|.
T Consensus       124 ~~~~~~~~~~~~~~~~~~~~~i~~~~l~~~L~~~a~~~gv~i~~~~~v~~l~~~~~~v~v~~~~~~G~~~~~a~~vV~AD  203 (570)
T 3fmw_A          124 GIFTQGLDFGLVDTRHPYTGLVPQSRTEALLAEHAREAGAEIPRGHEVTRLRQDAEAVEVTVAGPSGPYPVRARYGVGCD  203 (570)
T ss_dssp             TBCTTCCBGGGSCCSCCSBBCCCHHHHHHHHHHHHHHHTEECCBSCEEEECCBCSSCEEEEEEETTEEEEEEESEEEECS
T ss_pred             CcccccccccccCCCCCeeEEeCHHHHHHHHHHHHHhCCCEEEeCCEEEEEEEcCCeEEEEEEeCCCcEEEEeCEEEEcC
Confidence            0     000 00000  0         00112334456999999999999976554  5555  677 689999999999


Q ss_pred             CCCC
Q 012165          171 GCTA  174 (469)
Q Consensus       171 G~~~  174 (469)
                      |...
T Consensus       204 G~~S  207 (570)
T 3fmw_A          204 GGRS  207 (570)
T ss_dssp             CSSC
T ss_pred             CCCc
Confidence            9764

>2vou_A 2,6-dihydroxypyridine hydroxylase; oxidoreductase, aromatic hydroxylase, nicotine degradation, mono-oxygenase; HET: FAD; 2.6A {Arthrobacter nicotinovorans} SCOP: c.3.1.2 d.16.1.2

Probab=98.68  E-value=7.9e-08  Score=95.10  Aligned_cols=123  Identities=11%  Similarity=0.064  Sum_probs=73.3

Q ss_pred             CCCCcEEEEcCcHHHHHHHHHHHHcCCCCCcEEEEcCCCCCCCCCC-C--Cccc---cc--CCCC--CCCCCCCCCccc-
Q 012165           49 NENREFVIVGGGNAAGYAARTFVEHGMADGRLCIVSKEAYAPYERP-A--LTKG---YL--FPLD--KKPARLPGFHTC-  117 (469)
Q Consensus        49 ~~~~~vvIIGgG~AGl~aA~~L~~~g~~~~~V~vie~~~~~~~~~~-~--l~~~---~~--~~~~--~~~~~~~~~~~~-  117 (469)
                      ++++||+|||||++|+++|..|++.|+   +|+|+|+.+.....+. .  +...   .+  .+..  ............ 
T Consensus         3 ~~~~~V~IVGaG~aGl~~A~~L~~~G~---~v~v~E~~~~~~~~~~~g~~l~~~~~~~l~~~g~~~~~~~~~~~~~~~~~   79 (397)
T 2vou_A            3 PTTDRIAVVGGSISGLTAALMLRDAGV---DVDVYERSPQPLSGFGTGIVVQPELVHYLLEQGVELDSISVPSSSMEYVD   79 (397)
T ss_dssp             CCCSEEEEECCSHHHHHHHHHHHHTTC---EEEEECSSSSSCCCCSCEEECCHHHHHHHHHTTCCGGGTCBCCCEEEEEE
T ss_pred             CCCCcEEEECCCHHHHHHHHHHHhCCC---CEEEEecCCCCCCccccccccChhHHHHHHHcCCccccccccccceEEEe
Confidence            456899999999999999999999987   7999999865311100 0  0000   00  0000  000000000000 


Q ss_pred             --cCC-------CC-C---CCCHhHHHH--CCcEEEeCCcEEEEeCCC--cEEEeCCCeEEEeccEEeccCCCC
Q 012165          118 --VGS-------GG-E---RQTPEWYKE--KGIEMIYQDPVTSIDIEK--QTLITNSGKLLKYGSLIVATGCTA  174 (469)
Q Consensus       118 --~~~-------~~-~---~~~~~~~~~--~~i~~~~~~~v~~id~~~--~~v~~~~g~~~~yd~lVlAtG~~~  174 (469)
                        .+.       .. .   ....+.+.+  .+++++.+++|+++..+.  .+|++.+|+++.+|.||.|+|...
T Consensus        80 ~~~g~~~~~~~~~~~~~~~~~l~~~L~~~~~~~~i~~~~~v~~i~~~~~~v~v~~~~g~~~~ad~vV~AdG~~S  153 (397)
T 2vou_A           80 ALTGERVGSVPADWRFTSYDSIYGGLYELFGPERYHTSKCLVGLSQDSETVQMRFSDGTKAEANWVIGADGGAS  153 (397)
T ss_dssp             TTTCCEEEEEECCCCEEEHHHHHHHHHHHHCSTTEETTCCEEEEEECSSCEEEEETTSCEEEESEEEECCCTTC
T ss_pred             cCCCCccccccCcccccCHHHHHHHHHHhCCCcEEEcCCEEEEEEecCCEEEEEECCCCEEECCEEEECCCcch
Confidence              000       00 0   001122222  378999999999997544  367788898899999999999764

>3i3l_A Alkylhalidase CMLS; flavin-dependent halogenase, chloramphenicol biosynthesis, halogenation reaction, structural genomics; HET: FAD; 2.20A {Streptomyces venezuelae}

Probab=98.67  E-value=4.9e-08  Score=101.25  Aligned_cols=123  Identities=22%  Similarity=0.333  Sum_probs=73.4

Q ss_pred             CCCCcEEEEcCcHHHHHHHHHHHHcCCCCCcEEEEcCCCCCCCCCC--------------CCcc-------------ccc
Q 012165           49 NENREFVIVGGGNAAGYAARTFVEHGMADGRLCIVSKEAYAPYERP--------------ALTK-------------GYL  101 (469)
Q Consensus        49 ~~~~~vvIIGgG~AGl~aA~~L~~~g~~~~~V~vie~~~~~~~~~~--------------~l~~-------------~~~  101 (469)
                      |+.+||+|||||+||+++|..|++.|+   +|+|+|+.+.......              .+..             .+.
T Consensus        21 M~~~DVvIVGgG~AGl~aA~~Lar~G~---~V~LiEr~~~~~~~~G~~l~p~~~~~l~~lGl~~~l~~~~~~~~~~~~~~   97 (591)
T 3i3l_A           21 MTRSKVAIIGGGPAGSVAGLTLHKLGH---DVTIYERSAFPRYRVGESLLPGTMSILNRLGLQEKIDAQNYVKKPSATFL   97 (591)
T ss_dssp             CCCCEEEEECCSHHHHHHHHHHHHTTC---EEEEECSSCSSCCCCCCBCCHHHHHHHHHTTCHHHHHHHCCEEECEEEEE
T ss_pred             CCCCCEEEECcCHHHHHHHHHHHcCCC---CEEEEcCCCCCCCceeeeECHHHHHHHHHcCCcHHHHhcCCcccCCcEEE
Confidence            456899999999999999999999987   7999999864332110              0000             000


Q ss_pred             CCCCCCC--CCCCCC-------c--ccc-CCCCCCCCHhHHHHCCcEEEeCCcEEEEeCC-C--cEEEeC-CC--eEEEe
Q 012165          102 FPLDKKP--ARLPGF-------H--TCV-GSGGERQTPEWYKEKGIEMIYQDPVTSIDIE-K--QTLITN-SG--KLLKY  163 (469)
Q Consensus       102 ~~~~~~~--~~~~~~-------~--~~~-~~~~~~~~~~~~~~~~i~~~~~~~v~~id~~-~--~~v~~~-~g--~~~~y  163 (469)
                      .......  ..+...       .  ... ...+...+.+.+++.|++++.+++|+++..+ +  ..|++. +|  .++.+
T Consensus        98 ~~~~~~~~~~~~~~~~~~~~~~~~~~~v~r~~l~~~L~~~a~~~Gv~i~~g~~V~~v~~~~g~~~~V~~~~~G~~~~i~A  177 (591)
T 3i3l_A           98 WGQDQAPWTFSFAAPKVAPWVFDHAVQVKREEFDKLLLDEARSRGITVHEETPVTDVDLSDPDRVVLTVRRGGESVTVES  177 (591)
T ss_dssp             CSSSCCCEEEECCCC--CTTCCSCEEECCHHHHHHHHHHHHHHTTCEEETTCCEEEEECCSTTCEEEEEEETTEEEEEEE
T ss_pred             ecCCCccceeecccccccccccCeeEEEcHHHHHHHHHHHHHhCCCEEEeCCEEEEEEEcCCCEEEEEEecCCceEEEEc
Confidence            0000000  000000       0  000 0000001123345689999999999999864 2  256665 66  57999


Q ss_pred             ccEEeccCCCC
Q 012165          164 GSLIVATGCTA  174 (469)
Q Consensus       164 d~lVlAtG~~~  174 (469)
                      |.||.|+|...
T Consensus       178 dlVV~AdG~~S  188 (591)
T 3i3l_A          178 DFVIDAGGSGG  188 (591)
T ss_dssp             SEEEECCGGGC
T ss_pred             CEEEECCCCcc
Confidence            99999999754

>1s3e_A Amine oxidase [flavin-containing] B; human monoamine oxidase, inhibitor binding, rasagiline, enantioselectivity, oxidoreductase; HET: FAD RHP; 1.60A {Homo sapiens} SCOP: c.3.1.2 d.16.1.5 PDB: 1gos_A* 1oj9_A* 1ojb_A* 1ojc_A* 1ojd_A* 1s2q_A* 1s2y_A* 1oja_A* 1s3b_A* 2bk3_A* 2byb_A* 2c64_A* 2c65_A* 2c66_A* 2c67_A* 2c70_A* 2v5z_A* 2v60_A* 2v61_A* 2vrl_A* ...

Probab=98.67  E-value=2.4e-08  Score=102.51  Aligned_cols=50  Identities=12%  Similarity=0.139  Sum_probs=39.6

Q ss_pred             eHHHHHHcCcEEEcCCeEEEEEeCCCCcEEEEEcCCCCEEeCCEEEEccCCc
Q 012165          236 YEQLYQQNGVKFVKGASIKNLEAGSDGRVAAVKLEDGSTIDADTIVIGIGAK  287 (469)
Q Consensus       236 ~~~~l~~~gV~~~~~~~v~~i~~~~~~~v~~v~~~~g~~i~~D~vi~a~G~~  287 (469)
                      ...+.+..|+++++++.|++|+.. ++.+ .|.+.+|+++.+|.||++++..
T Consensus       218 ~~~l~~~lg~~i~~~~~V~~i~~~-~~~v-~v~~~~g~~~~ad~VI~a~p~~  267 (520)
T 1s3e_A          218 SERIMDLLGDRVKLERPVIYIDQT-RENV-LVETLNHEMYEAKYVISAIPPT  267 (520)
T ss_dssp             HHHHHHHHGGGEESSCCEEEEECS-SSSE-EEEETTSCEEEESEEEECSCGG
T ss_pred             HHHHHHHcCCcEEcCCeeEEEEEC-CCeE-EEEECCCeEEEeCEEEECCCHH
Confidence            344455568999999999999864 4445 3888899999999999999864

>3qj4_A Renalase; FAD/NAD(P)-binding rossmann fold superfamily, flavin contain oxidoreductase, monoamine oxidase, NAD, extracellular, oxidoreductase; HET: FAD; 2.50A {Homo sapiens}

Probab=98.65  E-value=4.8e-08  Score=94.58  Aligned_cols=119  Identities=17%  Similarity=0.236  Sum_probs=70.4

Q ss_pred             CCcEEEEcCcHHHHHHHHHHHH---cCCCCCcEEEEcCCCCCCCC----CC----CC--c--ccccCCCCC---------
Q 012165           51 NREFVIVGGGNAAGYAARTFVE---HGMADGRLCIVSKEAYAPYE----RP----AL--T--KGYLFPLDK---------  106 (469)
Q Consensus        51 ~~~vvIIGgG~AGl~aA~~L~~---~g~~~~~V~vie~~~~~~~~----~~----~l--~--~~~~~~~~~---------  106 (469)
                      |+||+|||||++|+++|..|++   .|+   +|+|+|+++.....    +.    ..  .  ..++.....         
T Consensus         1 m~dV~IIGaG~aGl~~A~~L~~~~~~G~---~V~v~Ek~~~~gg~~~~~~~~~~~~~~~d~g~~~~~~~~~~~~~~~~~~   77 (342)
T 3qj4_A            1 MAQVLIVGAGMTGSLCAALLRRQTSGPL---YLAVWDKADDSGGRMTTACSPHNPQCTADLGAQYITCTPHYAKKHQRFY   77 (342)
T ss_dssp             CEEEEEECCSHHHHHHHHHHHSCC-CCE---EEEEECSSSSSCGGGCEEECSSCTTCEEESSCCCEEECSSHHHHTHHHH
T ss_pred             CCcEEEECCcHHHHHHHHHHHhhccCCc---eEEEEECCCCCccceeeeecCCCCCceEecCCceEEcCchHHHHHHHHH
Confidence            3689999999999999999999   776   89999998643211    00    00  0  000000000         


Q ss_pred             -------CCCCCC----------CCccccCCCCCCCCH-hHHHHCCcEEEeCCcEEEEeCCCc--EEEeCCCeEEEeccE
Q 012165          107 -------KPARLP----------GFHTCVGSGGERQTP-EWYKEKGIEMIYQDPVTSIDIEKQ--TLITNSGKLLKYGSL  166 (469)
Q Consensus       107 -------~~~~~~----------~~~~~~~~~~~~~~~-~~~~~~~i~~~~~~~v~~id~~~~--~v~~~~g~~~~yd~l  166 (469)
                             ....+.          ............... ...+..+++++++++|++|..++.  +|++.+|+++.+|+|
T Consensus        78 ~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~g~~~l~~~l~~~~g~~i~~~~~V~~i~~~~~~~~v~~~~g~~~~ad~v  157 (342)
T 3qj4_A           78 DELLAYGVLRPLSSPIEGMVMKEGDCNFVAPQGISSIIKHYLKESGAEVYFRHRVTQINLRDDKWEVSKQTGSPEQFDLI  157 (342)
T ss_dssp             HHHHHTTSCEECCSCEETCCC--CCEEEECTTCTTHHHHHHHHHHTCEEESSCCEEEEEECSSSEEEEESSSCCEEESEE
T ss_pred             HHHHhCCCeecCchhhcceeccCCccceecCCCHHHHHHHHHHhcCCEEEeCCEEEEEEEcCCEEEEEECCCCEEEcCEE
Confidence                   000000          000000011111111 223345899999999999987543  677788887899999


Q ss_pred             EeccCC
Q 012165          167 IVATGC  172 (469)
Q Consensus       167 VlAtG~  172 (469)
                      |+|+..
T Consensus       158 V~A~p~  163 (342)
T 3qj4_A          158 VLTMPV  163 (342)
T ss_dssp             EECSCH
T ss_pred             EECCCH
Confidence            999974

>2xdo_A TETX2 protein; tetracycline degradation, tigecycline, flavin, bacteroides F oxidoreductase; HET: FAD; 2.09A {Bacteroides thetaiotaomicron} PDB: 2y6q_A* 2xyo_A* 2y6r_A* 3p9u_A*

Probab=98.65  E-value=1.6e-07  Score=92.80  Aligned_cols=124  Identities=14%  Similarity=0.164  Sum_probs=72.0

Q ss_pred             CCCCcEEEEcCcHHHHHHHHHHHHcCCCCCcEEEEcCCCCCCCCCCC--C--c----ccccC-------------CCCCC
Q 012165           49 NENREFVIVGGGNAAGYAARTFVEHGMADGRLCIVSKEAYAPYERPA--L--T----KGYLF-------------PLDKK  107 (469)
Q Consensus        49 ~~~~~vvIIGgG~AGl~aA~~L~~~g~~~~~V~vie~~~~~~~~~~~--l--~----~~~~~-------------~~~~~  107 (469)
                      ++++||+|||||++|+++|..|++.|+   +|+|+|+.+........  +  .    ...+.             +....
T Consensus        24 ~~~~dV~IVGaG~aGl~~A~~L~~~G~---~v~v~E~~~~~~~~~~g~~~~~~~~~~~~~l~~~gl~~~~~~~~~~~~~~  100 (398)
T 2xdo_A           24 LSDKNVAIIGGGPVGLTMAKLLQQNGI---DVSVYERDNDREARIFGGTLDLHKGSGQEAMKKAGLLQTYYDLALPMGVN  100 (398)
T ss_dssp             CTTCEEEEECCSHHHHHHHHHHHTTTC---EEEEEECSSSTTCCCCSCCEECCTTTHHHHHHHTTCHHHHHHHCBCCCEE
T ss_pred             cCCCCEEEECCCHHHHHHHHHHHHCCC---CEEEEeCCCCccccccCCeeeeCCccHHHHHHhcChHHHHHHhhcccceE
Confidence            456899999999999999999999987   89999998654221000  0  0    00000             00000


Q ss_pred             CCCCCCCcccc-------CCCCCC----CCHhHHHHC--CcEEEeCCcEEEEeCCCc--EEEeCCCeEEEeccEEeccCC
Q 012165          108 PARLPGFHTCV-------GSGGER----QTPEWYKEK--GIEMIYQDPVTSIDIEKQ--TLITNSGKLLKYGSLIVATGC  172 (469)
Q Consensus       108 ~~~~~~~~~~~-------~~~~~~----~~~~~~~~~--~i~~~~~~~v~~id~~~~--~v~~~~g~~~~yd~lVlAtG~  172 (469)
                      .....+.....       ......    .+.+.+.+.  +++++++++|++++.+..  +|++.+|+++.+|.||.|+|.
T Consensus       101 ~~~~~g~~~~~~~~~~~~~~~~~~i~r~~l~~~L~~~~~~~~i~~~~~v~~i~~~~~~v~v~~~~g~~~~ad~vV~AdG~  180 (398)
T 2xdo_A          101 IADEKGNILSTKNVKPENRFDNPEINRNDLRAILLNSLENDTVIWDRKLVMLEPGKKKWTLTFENKPSETADLVILANGG  180 (398)
T ss_dssp             EECSSSEEEEECCCGGGTTSSCCEECHHHHHHHHHHTSCTTSEEESCCEEEEEECSSSEEEEETTSCCEEESEEEECSCT
T ss_pred             EECCCCCchhhccccccCCCCCceECHHHHHHHHHhhcCCCEEEECCEEEEEEECCCEEEEEECCCcEEecCEEEECCCc
Confidence            00000000000       000000    011122221  357888999999976543  678888988999999999997


Q ss_pred             CCC
Q 012165          173 TAS  175 (469)
Q Consensus       173 ~~~  175 (469)
                      ...
T Consensus       181 ~S~  183 (398)
T 2xdo_A          181 MSK  183 (398)
T ss_dssp             TCS
T ss_pred             chh
Confidence            653

>2zxi_A TRNA uridine 5-carboxymethylaminomethyl modificat MNMG; modification, 5-carboxymethylaminomethyl uridine, WOBB uridine, FAD; HET: FAD; 2.30A {Aquifex aeolicus} PDB: 2zxh_A* 2e57_A*

Probab=98.63  E-value=2.4e-08  Score=102.82  Aligned_cols=157  Identities=15%  Similarity=0.116  Sum_probs=91.1

Q ss_pred             CCCcEEEEcCcHHHHHHHHHHHHcCCCCCcEEEEcCCC-CCCCCCCCCccccc-----------CCCC------C--CC-
Q 012165           50 ENREFVIVGGGNAAGYAARTFVEHGMADGRLCIVSKEA-YAPYERPALTKGYL-----------FPLD------K--KP-  108 (469)
Q Consensus        50 ~~~~vvIIGgG~AGl~aA~~L~~~g~~~~~V~vie~~~-~~~~~~~~l~~~~~-----------~~~~------~--~~-  108 (469)
                      ..+||+|||||+||++||..|++.|.   +|+|||+.+ ..+...+..+.+..           .+..      .  .. 
T Consensus        26 ~~yDVIVIGgG~AGl~AAlalAr~G~---kVlLIEk~~~~iG~~~Cnps~GGia~g~lv~eldalgg~~~~~~d~~gi~f  102 (637)
T 2zxi_A           26 DEFDVVVIGGGHAGIEAALAAARMGA---KTAMFVLNADTIGQMSCNPAIGGIAKGIVVREIDALGGEMGKAIDQTGIQF  102 (637)
T ss_dssp             GCCSEEEECCSHHHHHHHHHHHHTTC---CEEEEESCGGGTTCCCSCSEEECTTHHHHHHHHHHHTCSHHHHHHHHEEEE
T ss_pred             CcCCEEEECCCHHHHHHHHHHHHCCC---CEEEEEecccccCCcCccccccccchHHHHHHHHHhhhHHHHHhhhcccce
Confidence            45899999999999999999999987   799999874 22211110010000           0000      0  00 


Q ss_pred             -----CCCCCCccc---c-CCCCCCCCHhHHHH-CCcEEEeCCcEEEEeCCCc---EEEeCCCeEEEeccEEeccCCCCC
Q 012165          109 -----ARLPGFHTC---V-GSGGERQTPEWYKE-KGIEMIYQDPVTSIDIEKQ---TLITNSGKLLKYGSLIVATGCTAS  175 (469)
Q Consensus       109 -----~~~~~~~~~---~-~~~~~~~~~~~~~~-~~i~~~~~~~v~~id~~~~---~v~~~~g~~~~yd~lVlAtG~~~~  175 (469)
                           ..-+.....   . .........+.+++ .|++++ +++|+.+..++.   .|.+.+|.++.+|.||+|||..+.
T Consensus       103 ~~l~~~kGpav~~~r~~~Dr~~~~~~L~~~Le~~~GVeI~-~~~Vt~L~~e~g~V~GV~t~dG~~i~AdaVVLATG~~s~  181 (637)
T 2zxi_A          103 KMLNTRKGKAVQSPRAQADKKRYREYMKKVCENQENLYIK-QEEVVDIIVKNNQVVGVRTNLGVEYKTKAVVVTTGTFLN  181 (637)
T ss_dssp             EEESTTSCGGGCEEEEEECHHHHHHHHHHHHHTCTTEEEE-ESCEEEEEESSSBEEEEEETTSCEEECSEEEECCTTCBT
T ss_pred             eecccccCccccchhhhCCHHHHHHHHHHHHHhCCCCEEE-EeEEEEEEecCCEEEEEEECCCcEEEeCEEEEccCCCcc
Confidence                 000000000   0 00000111233445 589985 469999876544   377888988999999999998865


Q ss_pred             cCCCCCCCCcCcEEEecCHHHHHHHHHhhhcCCeEEEEcCChHHHHHHHHHHhCCCeEe
Q 012165          176 RFPEKIGGYLPGVHYIRDVADADALISSLEKAKKVVVVGGGYIGMEVAAAAVGWKLDTT  234 (469)
Q Consensus       176 ~~~~~~g~~~~~v~~~~~~~~~~~~~~~~~~~~~vvVvG~G~~g~e~A~~l~~~g~~v~  234 (469)
                      . +..+|     ....              .+.+    .|+.++++++..|.++|.++.
T Consensus       182 ~-~~~~G-----~~~~--------------~~Gr----~G~~~A~~la~~L~~lG~~v~  216 (637)
T 2zxi_A          182 G-VIYIG-----DKMI--------------PGGR----LGEPRSEGLSDFYRRFDFPLI  216 (637)
T ss_dssp             C-EEEET-----TEEE--------------ECSB----TTBCCBCTHHHHHHHTTCCCE
T ss_pred             C-ceecc-----ceec--------------CCCC----CCchhHHHHHHHHHhcCCceE
Confidence            3 32222     2211              1122    235678899999999988765

>3ps9_A TRNA 5-methylaminomethyl-2-thiouridine biosynthes bifunctional protein MNMC; rossmann fold, oxidase, methyl transferase, FAD; HET: FAD SAM; 2.54A {Escherichia coli} PDB: 3awi_A*

Probab=98.59  E-value=9.5e-08  Score=101.22  Aligned_cols=47  Identities=15%  Similarity=0.263  Sum_probs=37.7

Q ss_pred             HHHHCCcEEEeCCcEEEEeCCCc--EEEeCCCeEEEeccEEeccCCCCC
Q 012165          129 WYKEKGIEMIYQDPVTSIDIEKQ--TLITNSGKLLKYGSLIVATGCTAS  175 (469)
Q Consensus       129 ~~~~~~i~~~~~~~v~~id~~~~--~v~~~~g~~~~yd~lVlAtG~~~~  175 (469)
                      .+++.|++++.+++|+++..++.  .|.+.+|.++.+|+||+|||....
T Consensus       426 ~a~~~Gv~i~~~t~V~~l~~~~~~v~V~t~~G~~i~Ad~VVlAtG~~s~  474 (676)
T 3ps9_A          426 LAQQQGLQIYYQYQLQNFSRKDDCWLLNFAGDQQATHSVVVLANGHQIS  474 (676)
T ss_dssp             HHHHTTCEEEESCCEEEEEEETTEEEEEETTSCEEEESEEEECCGGGGG
T ss_pred             HHHhCCCEEEeCCeeeEEEEeCCeEEEEECCCCEEECCEEEECCCcchh
Confidence            34567999999999999976554  456667778999999999997643

>3ihg_A RDME; flavoenzyme, anthracycline, polyketide biosynthesis, merohedral twinning, enzyme mechanism, hydroxylase, flavoprotein; HET: FAD VAK; 2.49A {Streptomyces purpurascens}

Probab=98.58  E-value=8.6e-08  Score=98.73  Aligned_cols=38  Identities=18%  Similarity=0.343  Sum_probs=34.0

Q ss_pred             CCCCcEEEEcCcHHHHHHHHHHHHcCCCCCcEEEEcCCCCC
Q 012165           49 NENREFVIVGGGNAAGYAARTFVEHGMADGRLCIVSKEAYA   89 (469)
Q Consensus        49 ~~~~~vvIIGgG~AGl~aA~~L~~~g~~~~~V~vie~~~~~   89 (469)
                      ...+||+|||||++|+++|..|+++|.   +|+|||+.+..
T Consensus         3 ~~~~dVlIVGaG~aGl~~A~~La~~G~---~v~viEr~~~~   40 (535)
T 3ihg_A            3 DHEVDVLVVGAGLGGLSTAMFLARQGV---RVLVVERRPGL   40 (535)
T ss_dssp             CCSEEEEEECCSHHHHHHHHHHHTTTC---CEEEECSSSSC
T ss_pred             CccCcEEEECcCHHHHHHHHHHHHCCC---CEEEEeCCCCC
Confidence            456899999999999999999999987   79999998754

>1ryi_A Glycine oxidase; flavoprotein, protein-inhibitor complex, oxidoreductase; HET: FAD; 1.80A {Bacillus subtilis} SCOP: c.3.1.2 d.16.1.3 PDB: 3if9_A* 1ng4_A* 1ng3_A*

Probab=98.58  E-value=7.3e-08  Score=94.65  Aligned_cols=38  Identities=16%  Similarity=0.253  Sum_probs=33.7

Q ss_pred             CCCCCcEEEEcCcHHHHHHHHHHHHcCCCCCcEEEEcCCCC
Q 012165           48 ANENREFVIVGGGNAAGYAARTFVEHGMADGRLCIVSKEAY   88 (469)
Q Consensus        48 ~~~~~~vvIIGgG~AGl~aA~~L~~~g~~~~~V~vie~~~~   88 (469)
                      ...++||+|||||++|+++|..|++.|.   +|+|+|+...
T Consensus        14 ~~~~~dvvIIGgG~~Gl~~A~~La~~G~---~V~llE~~~~   51 (382)
T 1ryi_A           14 MKRHYEAVVIGGGIIGSAIAYYLAKENK---NTALFESGTM   51 (382)
T ss_dssp             CCSEEEEEEECCSHHHHHHHHHHHHTTC---CEEEECSSST
T ss_pred             cCCCCCEEEECcCHHHHHHHHHHHhCCC---cEEEEeCCCC
Confidence            3456899999999999999999999987   7999999753

>3oz2_A Digeranylgeranylglycerophospholipid reductase; structural genomics, joint center for structural genomics; HET: MSE FAD OZ2; 1.60A {Thermoplasma acidophilum}

Probab=98.57  E-value=4.5e-08  Score=96.34  Aligned_cols=122  Identities=19%  Similarity=0.301  Sum_probs=70.5

Q ss_pred             CCCcEEEEcCcHHHHHHHHHHHHcCCCCCcEEEEcCCCCCCCCCC---CCccccc----CCCCC--CCCCCCCCccc---
Q 012165           50 ENREFVIVGGGNAAGYAARTFVEHGMADGRLCIVSKEAYAPYERP---ALTKGYL----FPLDK--KPARLPGFHTC---  117 (469)
Q Consensus        50 ~~~~vvIIGgG~AGl~aA~~L~~~g~~~~~V~vie~~~~~~~~~~---~l~~~~~----~~~~~--~~~~~~~~~~~---  117 (469)
                      ++|||+||||||||+++|..|+++|+   +|+|+|+.+..+....   .++...+    .....  ....+.+....   
T Consensus         3 e~yDViIVGaGpaGl~~A~~La~~G~---~V~v~Er~~~~~~~~~~g~~l~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~   79 (397)
T 3oz2_A            3 ETYDVLVVGGGPGGSTAARYAAKYGL---KTLMIEKRPEIGSPVRCGEGLSKGILNEADIKADRSFIANEVKGARIYGPS   79 (397)
T ss_dssp             EEEEEEEECCSHHHHHHHHHHHHTTC---CEEEECSSSSTTCSCCSCCEEETHHHHHTTCCCCTTTEEEEESEEEEECTT
T ss_pred             CCCCEEEECcCHHHHHHHHHHHHCCC---cEEEEeCCCCCCCCCceecccCHHHHHHcCCCchhhhhhcccceEEEEeCC
Confidence            45899999999999999999999998   7999999775432211   0110000    00000  00000000000   


Q ss_pred             -----------cCCCC---------CCCCHhHHHHCCcEEEeCCcEEEEeCCCcEEE----eCCC--eEEEeccEEeccC
Q 012165          118 -----------VGSGG---------ERQTPEWYKEKGIEMIYQDPVTSIDIEKQTLI----TNSG--KLLKYGSLIVATG  171 (469)
Q Consensus       118 -----------~~~~~---------~~~~~~~~~~~~i~~~~~~~v~~id~~~~~v~----~~~g--~~~~yd~lVlAtG  171 (469)
                                 .....         ...+.+...+.|++++.+++|+.+..++..+.    ..++  .++++|.||.|.|
T Consensus        80 ~~~~~~~~~~~~~~~~~~~i~R~~~~~~L~~~a~~~G~~~~~~~~v~~~~~~~~~~~~v~~~~~~~~~~~~a~~vIgAdG  159 (397)
T 3oz2_A           80 EKRPIILQSEKAGNEVGYVLERDKFDKHLAALAAKAGADVWVKSPALGVIKENGKVAGAKIRHNNEIVDVRAKMVIAADG  159 (397)
T ss_dssp             CSSCEEEECSSSSCCCEEEECHHHHHHHHHHHHHHHTCEEESSCCEEEEEEETTEEEEEEEEETTEEEEEEEEEEEECCC
T ss_pred             CceEeeccccccCCceeEEEEHHHHHHHHHHHHHhcCcEEeeeeeeeeeeeccceeeeeeecccccceEEEEeEEEeCCc
Confidence                       00000         00011233567999999999998876655332    1233  3589999999999


Q ss_pred             CCC
Q 012165          172 CTA  174 (469)
Q Consensus       172 ~~~  174 (469)
                      ...
T Consensus       160 ~~S  162 (397)
T 3oz2_A          160 FES  162 (397)
T ss_dssp             TTC
T ss_pred             ccc
Confidence            764

>3pvc_A TRNA 5-methylaminomethyl-2-thiouridine biosynthes bifunctional protein MNMC; structural genomics, PSI-biology; HET: FAD; 2.31A {Yersinia pestis} PDB: 3sgl_A*

Probab=98.57  E-value=1.4e-06  Score=92.49  Aligned_cols=53  Identities=15%  Similarity=0.198  Sum_probs=42.2

Q ss_pred             eeHHHHHHcCcEEEcCCeEEEEEeCCCCcEEEEEcCCCC-EEeCCEEEEccCCccC
Q 012165          235 RYEQLYQQNGVKFVKGASIKNLEAGSDGRVAAVKLEDGS-TIDADTIVIGIGAKPT  289 (469)
Q Consensus       235 ~~~~~l~~~gV~~~~~~~v~~i~~~~~~~v~~v~~~~g~-~i~~D~vi~a~G~~p~  289 (469)
                      .+.+.+++.|++++++++|+++..++++ + .|.+.+|+ ++.+|.||+|+|....
T Consensus       417 aL~~~a~~~Gv~i~~~t~V~~l~~~~~~-v-~V~t~~G~~~i~Ad~VVlAtG~~s~  470 (689)
T 3pvc_A          417 ALMMLAQQNGMTCHYQHELQRLKRIDSQ-W-QLTFGQSQAAKHHATVILATGHRLP  470 (689)
T ss_dssp             HHHHHHHHTTCEEEESCCEEEEEECSSS-E-EEEEC-CCCCEEESEEEECCGGGTT
T ss_pred             HHHHHHHhCCCEEEeCCeEeEEEEeCCe-E-EEEeCCCcEEEECCEEEECCCcchh
Confidence            4556677889999999999999875444 4 67888887 8999999999998743

>3cp8_A TRNA uridine 5-carboxymethylaminomethyl modification enzyme GIDA; rossmann fold, FAD-binding domain, dinucleotide-binding motif; HET: FAD; 3.20A {Chlorobium tepidum}

Probab=98.56  E-value=3.9e-08  Score=101.54  Aligned_cols=159  Identities=13%  Similarity=0.160  Sum_probs=89.3

Q ss_pred             CCCCcEEEEcCcHHHHHHHHHHHHcCCCCCcEEEEcCCCC-CCCCCCCCccccc-----------CCCC---------CC
Q 012165           49 NENREFVIVGGGNAAGYAARTFVEHGMADGRLCIVSKEAY-APYERPALTKGYL-----------FPLD---------KK  107 (469)
Q Consensus        49 ~~~~~vvIIGgG~AGl~aA~~L~~~g~~~~~V~vie~~~~-~~~~~~~l~~~~~-----------~~~~---------~~  107 (469)
                      ...+||+|||||+||++||..|++.|.   +|+|+|+.+. .+...+..+.+..           .+..         ..
T Consensus        19 ~~~yDVIVIGgG~AGl~AAlaLAr~G~---kVlLIEk~~~~iG~~~c~ps~gGia~~~lv~el~al~g~~~~~~d~~gi~   95 (641)
T 3cp8_A           19 SHMYDVIVVGAGHAGCEAALAVARGGL---HCLLITSDLSAVARMSCNPAIGGVAKGQITREIDALGGEMGKAIDATGIQ   95 (641)
T ss_dssp             -CCEEEEEECCSHHHHHHHHHHHHTTC---CEEEEESCGGGTTCCSSCSEEECHHHHHHHHHHHHHTCSHHHHHHHHEEE
T ss_pred             cCcCCEEEECccHHHHHHHHHHHHCCC---cEEEEEecccccCCCccccchhhhhHHHHHHHHHhcccHHHHHHHhcCCc
Confidence            446899999999999999999999987   7999998742 2211110010000           0000         00


Q ss_pred             C-----CCCCCCccc---cC-CCCCCCCHhHHHH-CCcEEEeCCcEEEEeCCCcE---EEeCCCeEEEeccEEeccCCCC
Q 012165          108 P-----ARLPGFHTC---VG-SGGERQTPEWYKE-KGIEMIYQDPVTSIDIEKQT---LITNSGKLLKYGSLIVATGCTA  174 (469)
Q Consensus       108 ~-----~~~~~~~~~---~~-~~~~~~~~~~~~~-~~i~~~~~~~v~~id~~~~~---v~~~~g~~~~yd~lVlAtG~~~  174 (469)
                      .     ..-+.....   .. ........+.+++ .|++++. ..|..+..++..   |.+.+|.++.+|.||+|||+.+
T Consensus        96 f~~l~~~kgpav~~~r~~~Dr~~l~~~L~~~l~~~~GV~I~~-~~V~~L~~d~g~V~GV~t~~G~~i~Ad~VVLATG~~s  174 (641)
T 3cp8_A           96 FRMLNRSKGPAMHSPRAQADKTQYSLYMRRIVEHEPNIDLLQ-DTVIGVSANSGKFSSVTVRSGRAIQAKAAILACGTFL  174 (641)
T ss_dssp             EEEECSSSCTTTCEEEEEECHHHHHHHHHHHHHTCTTEEEEE-CCEEEEEEETTEEEEEEETTSCEEEEEEEEECCTTCB
T ss_pred             hhhcccccCccccchhhhcCHHHHHHHHHHHHHhCCCCEEEe-eEEEEEEecCCEEEEEEECCCcEEEeCEEEECcCCCC
Confidence            0     000000000   00 0000111233445 4899865 589888765443   6778888999999999999886


Q ss_pred             CcCCCCCCCCcCcEEEecCHHHHHHHHHhhhcCCeEEEEcCChHHHHHHHHHHhCCCeEe
Q 012165          175 SRFPEKIGGYLPGVHYIRDVADADALISSLEKAKKVVVVGGGYIGMEVAAAAVGWKLDTT  234 (469)
Q Consensus       175 ~~~~~~~g~~~~~v~~~~~~~~~~~~~~~~~~~~~vvVvG~G~~g~e~A~~l~~~g~~v~  234 (469)
                      .... .++     ....              .+.+++   |+.++++++..|.+.|.++.
T Consensus       175 ~~~i-~~G-----~~~~--------------~~g~~v---G~~~a~~la~~L~~~G~kv~  211 (641)
T 3cp8_A          175 NGLI-HIG-----MDHF--------------PGGRST---AEPPVEGLTESLASLGFSFG  211 (641)
T ss_dssp             TCEE-EET-----TEEE--------------ECSSST---TSCCBCSHHHHHHHTTCCEE
T ss_pred             Cccc-eee-----eeee--------------cccccc---CCchhhhhHHHHHhCCceEE
Confidence            5321 111     1111              011211   35677888888888887775

>2yqu_A 2-oxoglutarate dehydrogenase E3 component; lipoamide dehydrogenase, 2-oxoglutarate dehydrogenase comple pyruvate dehydrogenase complex; HET: FAD; 1.70A {Thermus thermophilus} PDB: 2eq7_A*

Probab=98.55  E-value=9.3e-08  Score=96.37  Aligned_cols=99  Identities=17%  Similarity=0.282  Sum_probs=75.5

Q ss_pred             CCCcEEEEcCcHHHHHHHHHHHHcCCCCCcEEEEcCCCCCCCCCCCCcccccCCCCCCCCCCCCCccccCCCCCCCCHhH
Q 012165           50 ENREFVIVGGGNAAGYAARTFVEHGMADGRLCIVSKEAYAPYERPALTKGYLFPLDKKPARLPGFHTCVGSGGERQTPEW  129 (469)
Q Consensus        50 ~~~~vvIIGgG~AGl~aA~~L~~~g~~~~~V~vie~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  129 (469)
                      ..++++|||||++|+.+|..|++.|.   +|+++++.+...   |....           .+           .....+.
T Consensus       166 ~~~~vvIiGgG~~g~e~A~~l~~~g~---~V~lv~~~~~~l---~~~~~-----------~~-----------~~~l~~~  217 (455)
T 2yqu_A          166 VPKRLIVVGGGVIGLELGVVWHRLGA---EVIVLEYMDRIL---PTMDL-----------EV-----------SRAAERV  217 (455)
T ss_dssp             CCSEEEEECCSHHHHHHHHHHHHTTC---EEEEECSSSSSC---TTSCH-----------HH-----------HHHHHHH
T ss_pred             CCCeEEEECCCHHHHHHHHHHHHcCC---EEEEEecCCccc---cccCH-----------HH-----------HHHHHHH
Confidence            35799999999999999999999986   799999876521   10000           00           1123456


Q ss_pred             HHHCCcEEEeCCcEEEEeCCCc--EEEeCCCeEEEeccEEeccCCCCCc
Q 012165          130 YKEKGIEMIYQDPVTSIDIEKQ--TLITNSGKLLKYGSLIVATGCTASR  176 (469)
Q Consensus       130 ~~~~~i~~~~~~~v~~id~~~~--~v~~~~g~~~~yd~lVlAtG~~~~~  176 (469)
                      +++.|++++.+++|.+++.++.  .+.+.+++++++|.||+|+|.+|..
T Consensus       218 l~~~Gv~i~~~~~V~~i~~~~~~v~v~~~~g~~i~~D~vv~A~G~~p~~  266 (455)
T 2yqu_A          218 FKKQGLTIRTGVRVTAVVPEAKGARVELEGGEVLEADRVLVAVGRRPYT  266 (455)
T ss_dssp             HHHHTCEEECSCCEEEEEEETTEEEEEETTSCEEEESEEEECSCEEECC
T ss_pred             HHHCCCEEEECCEEEEEEEeCCEEEEEECCCeEEEcCEEEECcCCCcCC
Confidence            7788999999999999987654  4556688889999999999988763

>1y56_B Sarcosine oxidase; dehydrogenase, protein-protein complex, oxidoreductase; HET: FAD FMN ATP CXS; 2.86A {Pyrococcus horikoshii}

Probab=98.55  E-value=6.2e-08  Score=95.20  Aligned_cols=46  Identities=30%  Similarity=0.338  Sum_probs=36.7

Q ss_pred             hHHHHCCcEEEeCCcEEEEeCCCcE---EEeCCCeEEEeccEEeccCCCC
Q 012165          128 EWYKEKGIEMIYQDPVTSIDIEKQT---LITNSGKLLKYGSLIVATGCTA  174 (469)
Q Consensus       128 ~~~~~~~i~~~~~~~v~~id~~~~~---v~~~~g~~~~yd~lVlAtG~~~  174 (469)
                      +.+++.|++++.+++|+++..++..   |++.+| ++.+|+||+|+|...
T Consensus       157 ~~~~~~Gv~i~~~~~v~~i~~~~~~v~gv~~~~g-~i~a~~VV~A~G~~s  205 (382)
T 1y56_B          157 VKAKEYGAKLLEYTEVKGFLIENNEIKGVKTNKG-IIKTGIVVNATNAWA  205 (382)
T ss_dssp             HHHHHTTCEEECSCCEEEEEESSSBEEEEEETTE-EEECSEEEECCGGGH
T ss_pred             HHHHHCCCEEECCceEEEEEEECCEEEEEEECCc-EEECCEEEECcchhH
Confidence            4456789999999999999865542   667667 699999999999764

>2gmh_A Electron transfer flavoprotein-ubiquinone oxidoreductase; HET: BHG FAD UQ5; 2.50A {Sus scrofa} SCOP: c.3.1.2 d.16.1.8 d.58.1.6 PDB: 2gmj_A*

Probab=98.55  E-value=1.7e-07  Score=97.27  Aligned_cols=37  Identities=38%  Similarity=0.553  Sum_probs=33.2

Q ss_pred             CCCcEEEEcCcHHHHHHHHHHHHc------CCCCCcEEEEcCCCCC
Q 012165           50 ENREFVIVGGGNAAGYAARTFVEH------GMADGRLCIVSKEAYA   89 (469)
Q Consensus        50 ~~~~vvIIGgG~AGl~aA~~L~~~------g~~~~~V~vie~~~~~   89 (469)
                      +.+||+|||||+||+++|..|++.      |.   +|+|+|+.+..
T Consensus        34 ~~~DVvIVGaG~aGlaaA~~La~~~~~~~~G~---~V~vlEk~~~~   76 (584)
T 2gmh_A           34 EEADVVIVGAGPAGLSAATRLKQLAAQHEKDL---RVCLVEKAAHI   76 (584)
T ss_dssp             EECSEEEECCSHHHHHHHHHHHHHHHHTTCCC---CEEEECSSSST
T ss_pred             cCCCEEEECcCHHHHHHHHHHHhcccccCCCC---cEEEEeCCCCC
Confidence            458999999999999999999998      76   79999998654

>2qa1_A PGAE, polyketide oxygenase PGAE; FAD, angucycline, aromatic hydroxylase, oxidored; HET: FAD; 1.80A {Streptomyces}

Probab=98.54  E-value=5.1e-08  Score=99.42  Aligned_cols=123  Identities=15%  Similarity=0.188  Sum_probs=72.5

Q ss_pred             CCCCcEEEEcCcHHHHHHHHHHHHcCCCCCcEEEEcCCCCCCCC-C--------------CCCcccccCCCCCCCCCCCC
Q 012165           49 NENREFVIVGGGNAAGYAARTFVEHGMADGRLCIVSKEAYAPYE-R--------------PALTKGYLFPLDKKPARLPG  113 (469)
Q Consensus        49 ~~~~~vvIIGgG~AGl~aA~~L~~~g~~~~~V~vie~~~~~~~~-~--------------~~l~~~~~~~~~~~~~~~~~  113 (469)
                      .+++||+|||||++|+++|..|+++|+   +|+|+|+.+..... +              ..+...+..........+.+
T Consensus         9 ~~~~dVlIVGaGpaGl~~A~~La~~G~---~v~vlE~~~~~~~~~r~~~l~~~~~~~l~~lGl~~~~~~~~~~~~~~~~~   85 (500)
T 2qa1_A            9 RSDAAVIVVGAGPAGMMLAGELRLAGV---EVVVLERLVERTGESRGLGFTARTMEVFDQRGILPRFGEVETSTQGHFGG   85 (500)
T ss_dssp             CSBCSEEEECCSHHHHHHHHHHHHTTC---CEEEEESCCC-CCCCCSEEECHHHHHHHHTTTCGGGGCSCCBCCEEEETT
T ss_pred             cCCCCEEEECcCHHHHHHHHHHHHCCC---CEEEEeCCCCCCCCCCcceECHHHHHHHHHCCCHHHHHhccccccccccc
Confidence            456899999999999999999999998   79999998654211 0              00111000000000000000


Q ss_pred             --Cccc-cCC-----------CCCCCCHhHHHHCCcEEEeCCcEEEEeCCCc--EEEeCCCe---EEEeccEEeccCCCC
Q 012165          114 --FHTC-VGS-----------GGERQTPEWYKEKGIEMIYQDPVTSIDIEKQ--TLITNSGK---LLKYGSLIVATGCTA  174 (469)
Q Consensus       114 --~~~~-~~~-----------~~~~~~~~~~~~~~i~~~~~~~v~~id~~~~--~v~~~~g~---~~~yd~lVlAtG~~~  174 (469)
                        +... ...           .....+.+.+.+.+++++.+++|+++..+..  ++++.++.   ++++|+||.|.|.+.
T Consensus        86 ~~~~~~~~~~~~~~~~~i~~~~l~~~L~~~~~~~gv~v~~~~~v~~i~~~~~~v~v~~~~~~g~~~~~a~~vVgADG~~S  165 (500)
T 2qa1_A           86 LPIDFGVLEGAWQAAKTVPQSVTETHLEQWATGLGADIRRGHEVLSLTDDGAGVTVEVRGPEGKHTLRAAYLVGCDGGRS  165 (500)
T ss_dssp             EEEEGGGSTTGGGCEEEEEHHHHHHHHHHHHHHTTCEEEETCEEEEEEEETTEEEEEEEETTEEEEEEESEEEECCCTTC
T ss_pred             eecccccCCCCCCceeecCHHHHHHHHHHHHHHCCCEEECCcEEEEEEEcCCeEEEEEEcCCCCEEEEeCEEEECCCcch
Confidence              0000 000           0000112334567999999999999976554  45555553   799999999999764

>3rp8_A Flavoprotein monooxygenase; FAD-binding protein, oxidoreductase; HET: FAD; 1.97A {Klebsiella pneumoniae} PDB: 3rp7_A* 3rp6_A*

Probab=98.54  E-value=6.5e-08  Score=96.00  Aligned_cols=125  Identities=11%  Similarity=0.041  Sum_probs=70.3

Q ss_pred             CCCCCCcEEEEcCcHHHHHHHHHHHHcCCCCCcEEEEcCCCCCCCCCC---------------CCccc------------
Q 012165           47 FANENREFVIVGGGNAAGYAARTFVEHGMADGRLCIVSKEAYAPYERP---------------ALTKG------------   99 (469)
Q Consensus        47 ~~~~~~~vvIIGgG~AGl~aA~~L~~~g~~~~~V~vie~~~~~~~~~~---------------~l~~~------------   99 (469)
                      ..++++||+|||||++|+++|..|+++|+   +|+|+|+.+.......               .+...            
T Consensus        19 ~~~~~~dV~IVGaG~aGl~~A~~La~~G~---~V~v~E~~~~~~~~~~~~~l~~~~~~~l~~lg~~~~~~~~~~~~~~~~   95 (407)
T 3rp8_A           19 YFQGHMKAIVIGAGIGGLSAAVALKQSGI---DCDVYEAVKEIKPVGAAISVWPNGVKCMAHLGMGDIMETFGGPLRRMA   95 (407)
T ss_dssp             ----CCEEEEECCSHHHHHHHHHHHHTTC---EEEEEESSSCC----CEEEECHHHHHHHHHTTCHHHHHHHSCCCCEEE
T ss_pred             cCCCCCEEEEECCCHHHHHHHHHHHhCCC---CEEEEeCCCCCCCcCeeEEECHHHHHHHHHCCCHHHHHhhcCCCcceE
Confidence            34557899999999999999999999998   7999999875421100               00000            


Q ss_pred             ccCCC-CCCCCCCCCC--cccc-CCCCCC---CCHhHHHH--CCcEEEeCCcEEEEeCCCc--EEEeCCCeEEEeccEEe
Q 012165          100 YLFPL-DKKPARLPGF--HTCV-GSGGER---QTPEWYKE--KGIEMIYQDPVTSIDIEKQ--TLITNSGKLLKYGSLIV  168 (469)
Q Consensus       100 ~~~~~-~~~~~~~~~~--~~~~-~~~~~~---~~~~~~~~--~~i~~~~~~~v~~id~~~~--~v~~~~g~~~~yd~lVl  168 (469)
                      +.... ......++..  .... ......   .+...+.+  ..++++.+++|++++.++.  +|++.+|+++.+|.||.
T Consensus        96 ~~~~~~g~~~~~~~~~~~~~~~~~~~~~i~r~~l~~~L~~~~~~~~i~~~~~v~~i~~~~~~v~v~~~~g~~~~a~~vV~  175 (407)
T 3rp8_A           96 YRDFRSGENMTQFSLAPLIERTGSRPCPVSRAELQREMLDYWGRDSVQFGKRVTRCEEDADGVTVWFTDGSSASGDLLIA  175 (407)
T ss_dssp             EEETTTCCEEEEEECHHHHHHHSSCCEEEEHHHHHHHHHHHHCGGGEEESCCEEEEEEETTEEEEEETTSCEEEESEEEE
T ss_pred             EEECCCCCEeEEecchhhhhhcCCceEEEEHHHHHHHHHHhCCcCEEEECCEEEEEEecCCcEEEEEcCCCEEeeCEEEE
Confidence            00000 0000000000  0000 000000   01111111  1278889999999987654  56778999999999999


Q ss_pred             ccCCCC
Q 012165          169 ATGCTA  174 (469)
Q Consensus       169 AtG~~~  174 (469)
                      |+|...
T Consensus       176 AdG~~S  181 (407)
T 3rp8_A          176 ADGSHS  181 (407)
T ss_dssp             CCCTTC
T ss_pred             CCCcCh
Confidence            999764

>3e1t_A Halogenase; flavoprotein; HET: FAD; 2.05A {Chondromyces crocatus}

Probab=98.53  E-value=1.4e-07  Score=96.55  Aligned_cols=124  Identities=17%  Similarity=0.210  Sum_probs=72.6

Q ss_pred             CCCCcEEEEcCcHHHHHHHHHHHHcCCCCCcEEEEcCCCCCCCCCC-CC-c---cccc---------CCCCCCCC-----
Q 012165           49 NENREFVIVGGGNAAGYAARTFVEHGMADGRLCIVSKEAYAPYERP-AL-T---KGYL---------FPLDKKPA-----  109 (469)
Q Consensus        49 ~~~~~vvIIGgG~AGl~aA~~L~~~g~~~~~V~vie~~~~~~~~~~-~l-~---~~~~---------~~~~~~~~-----  109 (469)
                      +.++||+|||||++|+++|..|++.|+   +|+|+|+.+...+... .+ +   ..++         ........     
T Consensus         5 ~~~~dVvIVGgG~aGl~aA~~La~~G~---~V~liE~~~~~~~~~g~~~~~~~~~~~l~~lgl~~~~~~~~~~~~~~~~~   81 (512)
T 3e1t_A            5 PEVFDLIVIGGGPGGSTLASFVAMRGH---RVLLLEREAFPRHQIGESLLPATVHGICAMLGLTDEMKRAGFPIKRGGTF   81 (512)
T ss_dssp             CEEEEEEEECCSHHHHHHHHHHHTTTC---CEEEECSSCSSCCCSCCBCCHHHHTTHHHHTTCHHHHHTTTCCEECEEEE
T ss_pred             CccCCEEEECcCHHHHHHHHHHHhCCC---CEEEEccCCCCCCCCCcccCcchHHHHHHHhCcHHHHHHcCCccccCceE
Confidence            345899999999999999999999987   7999999874322110 00 0   0000         00000000     


Q ss_pred             CCCC--------Ccc--ccCCC---------CCCCCHhHHHHCCcEEEeCCcEEEEeCCCcE---EE--eCCCe--EEEe
Q 012165          110 RLPG--------FHT--CVGSG---------GERQTPEWYKEKGIEMIYQDPVTSIDIEKQT---LI--TNSGK--LLKY  163 (469)
Q Consensus       110 ~~~~--------~~~--~~~~~---------~~~~~~~~~~~~~i~~~~~~~v~~id~~~~~---v~--~~~g~--~~~y  163 (469)
                      .+..        +..  .....         +...+.+.+.+.|++++.+++|+++..++..   |+  ..+|+  ++.+
T Consensus        82 ~~~~~~~~~~~~~~~~~~~~~~~~~~v~r~~l~~~L~~~a~~~Gv~i~~~~~V~~v~~~~~~v~gv~~~~~dG~~~~i~a  161 (512)
T 3e1t_A           82 RWGKEPEPWTFGFTRHPDDPYGFAYQVERARFDDMLLRNSERKGVDVRERHEVIDVLFEGERAVGVRYRNTEGVELMAHA  161 (512)
T ss_dssp             ECSSCSSCEEEESSSSSSSTTCCEEBCCHHHHHHHHHHHHHHTTCEEESSCEEEEEEEETTEEEEEEEECSSSCEEEEEE
T ss_pred             EecCCccccccccccCCCCCcceeeEecHHHHHHHHHHHHHhCCCEEEcCCEEEEEEEECCEEEEEEEEeCCCCEEEEEc
Confidence            0000        000  00000         0001123345679999999999999876653   33  34564  7999


Q ss_pred             ccEEeccCCCCC
Q 012165          164 GSLIVATGCTAS  175 (469)
Q Consensus       164 d~lVlAtG~~~~  175 (469)
                      |.||.|+|....
T Consensus       162 d~VI~AdG~~S~  173 (512)
T 3e1t_A          162 RFIVDASGNRTR  173 (512)
T ss_dssp             EEEEECCCTTCS
T ss_pred             CEEEECCCcchH
Confidence            999999998653

>3dje_A Fructosyl amine: oxygen oxidoreductase; fructosyl-amino acid, amadoriase, deglycation, fructosamine oxidase; HET: MSE FAD FSA EPE; 1.60A {Aspergillus fumigatus} PDB: 3djd_A*

Probab=98.52  E-value=1.7e-07  Score=93.83  Aligned_cols=49  Identities=18%  Similarity=0.371  Sum_probs=39.2

Q ss_pred             HHHHCCcEEEeCC---cEEEEeCCCc--E-EEeCCCeEEEeccEEeccCCCCCcC
Q 012165          129 WYKEKGIEMIYQD---PVTSIDIEKQ--T-LITNSGKLLKYGSLIVATGCTASRF  177 (469)
Q Consensus       129 ~~~~~~i~~~~~~---~v~~id~~~~--~-v~~~~g~~~~yd~lVlAtG~~~~~~  177 (469)
                      .+++.|++++.++   +|+++..++.  + |++.+|+++.+|+||+|||.....+
T Consensus       170 ~a~~~Gv~i~~~t~~~~V~~i~~~~~~v~gV~t~~G~~i~Ad~VV~AtG~~s~~l  224 (438)
T 3dje_A          170 EAQRMGVKFVTGTPQGRVVTLIFENNDVKGAVTADGKIWRAERTFLCAGASAGQF  224 (438)
T ss_dssp             HHHHTTCEEEESTTTTCEEEEEEETTEEEEEEETTTEEEECSEEEECCGGGGGGT
T ss_pred             HHHhcCCEEEeCCcCceEEEEEecCCeEEEEEECCCCEEECCEEEECCCCChhhh
Confidence            3456799999998   9999976554  3 7788888899999999999765433

>2bry_A NEDD9 interacting protein with calponin homology and LIM domains; transport, coiled coil, cytoskeleton, FAD, flavoprotein, metal-binding, zinc; HET: FAD; 1.45A {Mus musculus} PDB: 2c4c_A* 2bra_A*

Probab=98.52  E-value=2.2e-08  Score=102.02  Aligned_cols=129  Identities=16%  Similarity=0.109  Sum_probs=88.9

Q ss_pred             EeccEEeccCCCCCcCCCCCCCCcCcEEEecCHHHHHHH---------HHh--hhcCCeEEEEcCChHHHHHHHHHHhCC
Q 012165          162 KYGSLIVATGCTASRFPEKIGGYLPGVHYIRDVADADAL---------ISS--LEKAKKVVVVGGGYIGMEVAAAAVGWK  230 (469)
Q Consensus       162 ~yd~lVlAtG~~~~~~~~~~g~~~~~v~~~~~~~~~~~~---------~~~--~~~~~~vvVvG~G~~g~e~A~~l~~~g  230 (469)
                      .||++++++|+++.. +++++..++++.......+...+         ...  .....+|+|||||++|+.+|..|++.|
T Consensus        37 ~~~~l~~~~g~~~~~-~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dVvIVGgG~aGl~aA~~La~~G  115 (497)
T 2bry_A           37 SFQGLCRALGVESGG-GLSQYHKIKAQLNYWSAKSLWAKLDKRASQPVYQQGQACTNTKCLVVGAGPCGLRAAVELALLG  115 (497)
T ss_dssp             HHHHHHHHHTCCTTC-HHHHHHHHHHTCCSTTTHHHHHHHHHHHTSGGGGGGTTTTTCEEEEECCSHHHHHHHHHHHHTT
T ss_pred             HHHHHHHHhCCCCCC-CcEeehhhHHHHHHHHHHHhhhhhhhhhccccccCccccCCCCEEEECccHHHHHHHHHHHHCC
Confidence            578999999999763 33333333444444444444333         111  123578999999999999999999999


Q ss_pred             CeEe---------------------------------------------------eeHHHHHHcCcEEEcCCeEEEEEeC
Q 012165          231 LDTT---------------------------------------------------RYEQLYQQNGVKFVKGASIKNLEAG  259 (469)
Q Consensus       231 ~~v~---------------------------------------------------~~~~~l~~~gV~~~~~~~v~~i~~~  259 (469)
                      .+|+                                                   .+.+.+++.||++++++.+++++.+
T Consensus       116 ~~V~liEk~~~~g~~~~~~~~~~~~~~l~~~g~~~~~~~~~~~~~~~~~~~~l~~~L~~~~~~~gv~v~~~~~v~~i~~~  195 (497)
T 2bry_A          116 ARVVLVEKRIKFSRHNVLHLWPFTIHDLRALGAKKFYGRFCTGTLDHISIRQLQLLLLKVALLLGVEIHWGVKFTGLQPP  195 (497)
T ss_dssp             CEEEEEESCSSCCCCCEEECCHHHHHHHHTTTHHHHCTTTTCTTCCEEEHHHHHHHHHHHHHHTTCEEEESCEEEEEECC
T ss_pred             CeEEEEEeccccCCCCcccCChhHHHHHHHcCCccccccccccccccCCHHHHHHHHHHHHHhCCCEEEeCCEEEEEEEe
Confidence            8876                                                   0123445679999999999999853


Q ss_pred             C-CCcEEEEEc--C-CC--CEEeCCEEEEccCCccCCc
Q 012165          260 S-DGRVAAVKL--E-DG--STIDADTIVIGIGAKPTVS  291 (469)
Q Consensus       260 ~-~~~v~~v~~--~-~g--~~i~~D~vi~a~G~~p~~~  291 (469)
                      + ++....|.+  . +|  +++.+|.||.|+|..+...
T Consensus       196 ~~~~~~~~v~~~~~~~g~~~~i~ad~VV~A~G~~S~~r  233 (497)
T 2bry_A          196 PRKGSGWRAQLQPNPPAQLASYEFDVLISAAGGKFVPE  233 (497)
T ss_dssp             CSTTCCBEEEEESCCCHHHHTCCBSEEEECCCTTCCCT
T ss_pred             cCCCCEEEEEEEECCCCCEEEEEcCEEEECCCCCcccc
Confidence            2 222234555  4 66  5799999999999988653

>2qa2_A CABE, polyketide oxygenase CABE; FAD, angucycline, aromatic hydroxylase, oxidored; HET: FAD; 2.70A {Streptomyces}

Probab=98.51  E-value=7.1e-08  Score=98.31  Aligned_cols=122  Identities=15%  Similarity=0.204  Sum_probs=73.0

Q ss_pred             CCCCcEEEEcCcHHHHHHHHHHHHcCCCCCcEEEEcCCCCCCCC-C--------------CCCcccccCCCCCCC-CCCC
Q 012165           49 NENREFVIVGGGNAAGYAARTFVEHGMADGRLCIVSKEAYAPYE-R--------------PALTKGYLFPLDKKP-ARLP  112 (469)
Q Consensus        49 ~~~~~vvIIGgG~AGl~aA~~L~~~g~~~~~V~vie~~~~~~~~-~--------------~~l~~~~~~~~~~~~-~~~~  112 (469)
                      .+.+||+|||||++|+++|..|+++|+   +|+|+|+.+..... +              ..+...+... .... ..+.
T Consensus        10 ~~~~dVlIVGaGpaGl~~A~~La~~G~---~v~vlE~~~~~~~~~r~~~l~~~~~~~l~~lGl~~~~~~~-~~~~~~~~~   85 (499)
T 2qa2_A           10 RSDASVIVVGAGPAGLMLAGELRLGGV---DVMVLEQLPQRTGESRGLGFTARTMEVFDQRGILPAFGPV-ETSTQGHFG   85 (499)
T ss_dssp             -CCEEEEEECCSHHHHHHHHHHHHTTC---CEEEEESCSSCCCCCCSEEECHHHHHHHHHTTCGGGGCSC-CEESEEEET
T ss_pred             CCCCCEEEECcCHHHHHHHHHHHHCCC---CEEEEECCCCCCCCCceeEECHHHHHHHHHCCCHHHHHhc-cccccceec
Confidence            356899999999999999999999998   79999998654211 0              0000000000 0000 0000


Q ss_pred             CC--ccc-cCCC-----------CCCCCHhHHHHCCcEEEeCCcEEEEeCCCc--EEEeCCCe---EEEeccEEeccCCC
Q 012165          113 GF--HTC-VGSG-----------GERQTPEWYKEKGIEMIYQDPVTSIDIEKQ--TLITNSGK---LLKYGSLIVATGCT  173 (469)
Q Consensus       113 ~~--~~~-~~~~-----------~~~~~~~~~~~~~i~~~~~~~v~~id~~~~--~v~~~~g~---~~~yd~lVlAtG~~  173 (469)
                      +.  ... ....           ....+.+.+.+.+++++.+++|++++.+..  +|++.++.   ++++|+||.|.|.+
T Consensus        86 ~~~~~~~~~~~~~~~~~~i~~~~l~~~L~~~~~~~gv~v~~~~~v~~i~~~~~~v~v~~~~~~g~~~~~a~~vVgADG~~  165 (499)
T 2qa2_A           86 GRPVDFGVLEGAHYGVKAVPQSTTESVLEEWALGRGAELLRGHTVRALTDEGDHVVVEVEGPDGPRSLTTRYVVGCDGGR  165 (499)
T ss_dssp             TEEEEGGGSTTCCCEEEEEEHHHHHHHHHHHHHHTTCEEEESCEEEEEEECSSCEEEEEECSSCEEEEEEEEEEECCCTT
T ss_pred             ceecccccCCCCCCceEecCHHHHHHHHHHHHHhCCCEEEcCCEEEEEEEeCCEEEEEEEcCCCcEEEEeCEEEEccCcc
Confidence            00  000 0000           000112334567999999999999976543  56666664   79999999999986


Q ss_pred             C
Q 012165          174 A  174 (469)
Q Consensus       174 ~  174 (469)
                      .
T Consensus       166 S  166 (499)
T 2qa2_A          166 S  166 (499)
T ss_dssp             C
T ss_pred             c
Confidence            4

>3atr_A Conserved archaeal protein; saturating double bonds, archaeal membrane precursor, like 2 geranylgeranylglyceryl phosphate; HET: FDA; 1.80A {Sulfolobus acidocaldarius} PDB: 3atq_A*

Probab=98.51  E-value=1.3e-08  Score=102.58  Aligned_cols=123  Identities=16%  Similarity=0.235  Sum_probs=71.5

Q ss_pred             CCCcEEEEcCcHHHHHHHHHHHHcCCCCCcEEEEcCCCCCCC-CCCC---CcccccC--C-CCCCCC----CCCCCcccc
Q 012165           50 ENREFVIVGGGNAAGYAARTFVEHGMADGRLCIVSKEAYAPY-ERPA---LTKGYLF--P-LDKKPA----RLPGFHTCV  118 (469)
Q Consensus        50 ~~~~vvIIGgG~AGl~aA~~L~~~g~~~~~V~vie~~~~~~~-~~~~---l~~~~~~--~-~~~~~~----~~~~~~~~~  118 (469)
                      +++||+|||||+||+++|..|++.|+   +|+|+|+.+.... ..+.   ++...+.  . ......    ...+.....
T Consensus         5 ~~~dVvIVGaG~aGl~aA~~La~~G~---~V~vlE~~~~~~~g~~~~g~~l~~~~l~~lg~~~~~~~~~~~~~~~~~~~~   81 (453)
T 3atr_A            5 LKYDVLIIGGGFAGSSAAYQLSRRGL---KILLVDSKPWNRIGDKPCGDAVSKAHFDKLGMPYPKGEELENKINGIKLYS   81 (453)
T ss_dssp             EECSEEEECCSHHHHHHHHHHSSSSC---CEEEECSSCGGGTTCSCCCCEEEHHHHHHTTCCCCCGGGEEEEEEEEEEEC
T ss_pred             CcCCEEEECcCHHHHHHHHHHHHCCC---CEEEEECCCCCCCCcccccccccHHHHHHhcCCCCchHHHHhhhcceEEEC
Confidence            35899999999999999999999987   7999999865311 1100   0000000  0 000000    000000000


Q ss_pred             CC-----------------CCCCCCHhHHHHCCcEEEeCCcEEEEeCCCcE---EEeC---CCe--EEEeccEEeccCCC
Q 012165          119 GS-----------------GGERQTPEWYKEKGIEMIYQDPVTSIDIEKQT---LITN---SGK--LLKYGSLIVATGCT  173 (469)
Q Consensus       119 ~~-----------------~~~~~~~~~~~~~~i~~~~~~~v~~id~~~~~---v~~~---~g~--~~~yd~lVlAtG~~  173 (469)
                      ..                 .+...+.+.+.+.|++++.+++|++++.++..   |++.   +|+  ++.+|.||.|+|..
T Consensus        82 ~~~~~~~~~~~~~~~i~r~~l~~~L~~~a~~~gv~i~~~~~v~~i~~~~~~v~gv~~~~~~~G~~~~~~ad~VV~AdG~~  161 (453)
T 3atr_A           82 PDMQTVWTVNGEGFELNAPLYNQRVLKEAQDRGVEIWDLTTAMKPIFEDGYVKGAVLFNRRTNEELTVYSKVVVEATGYS  161 (453)
T ss_dssp             TTSSCEEEEEEEEEEECHHHHHHHHHHHHHHTTCEEESSEEEEEEEEETTEEEEEEEEETTTTEEEEEECSEEEECCGGG
T ss_pred             CCCceEEeECCCcEEEcHHHHHHHHHHHHHHcCCEEEeCcEEEEEEEECCEEEEEEEEEcCCCceEEEEcCEEEECcCCc
Confidence            00                 00001122334579999999999998776544   4443   665  79999999999976


Q ss_pred             CC
Q 012165          174 AS  175 (469)
Q Consensus       174 ~~  175 (469)
                      ..
T Consensus       162 s~  163 (453)
T 3atr_A          162 RS  163 (453)
T ss_dssp             CT
T ss_pred             hh
Confidence            43

>2gag_B Heterotetrameric sarcosine oxidase beta-subunit; flavoenzyme, electron transfer, folate-ME enzyme, oxidoreductase; HET: NAD FAD FMN; 1.85A {Stenotrophomonas maltophilia} PDB: 2gah_B* 1x31_B* 1vrq_B* 3ad7_B* 3ad8_B* 3ad9_B* 3ada_B*

Probab=98.48  E-value=1.3e-07  Score=93.52  Aligned_cols=46  Identities=20%  Similarity=0.252  Sum_probs=36.6

Q ss_pred             hHHHHCCcEEEeCCcEEEEeCCCc---EEEeCCCeEEEeccEEeccCCCC
Q 012165          128 EWYKEKGIEMIYQDPVTSIDIEKQ---TLITNSGKLLKYGSLIVATGCTA  174 (469)
Q Consensus       128 ~~~~~~~i~~~~~~~v~~id~~~~---~v~~~~g~~~~yd~lVlAtG~~~  174 (469)
                      +.+++.|++++.+++|+++..++.   .|++.+| ++.+|+||+|+|...
T Consensus       182 ~~~~~~g~~i~~~~~v~~i~~~~~~~~~v~~~~g-~~~a~~vV~a~G~~s  230 (405)
T 2gag_B          182 RKANEMGVDIIQNCEVTGFIKDGEKVTGVKTTRG-TIHAGKVALAGAGHS  230 (405)
T ss_dssp             HHHHHTTCEEECSCCEEEEEESSSBEEEEEETTC-CEEEEEEEECCGGGH
T ss_pred             HHHHHCCCEEEcCCeEEEEEEeCCEEEEEEeCCc-eEECCEEEECCchhH
Confidence            345677999999999999986543   4677777 699999999999754

>1k0i_A P-hydroxybenzoate hydroxylase; PHBH, FAD, P-OHB, hydrolase; HET: FAD PHB; 1.80A {Pseudomonas aeruginosa} SCOP: c.3.1.2 d.16.1.2 PDB: 1k0j_A* 1k0l_A* 1doc_A* 1d7l_A* 1dod_A* 1doe_A* 1ius_A* 1iut_A* 1iuu_A* 1iuv_A* 1iuw_A* 1iux_A* 1pxb_A* 1pxc_A* 1dob_A* 1ykj_A* 1pxa_A* 1pbe_A* 1pdh_A* 1phh_A* ...

Probab=98.45  E-value=2.6e-07  Score=91.10  Aligned_cols=122  Identities=17%  Similarity=0.238  Sum_probs=72.0

Q ss_pred             CCcEEEEcCcHHHHHHHHHHHHcCCCCCcEEEEcCCCCC---CCCCCC-Cccc---cc----------------------
Q 012165           51 NREFVIVGGGNAAGYAARTFVEHGMADGRLCIVSKEAYA---PYERPA-LTKG---YL----------------------  101 (469)
Q Consensus        51 ~~~vvIIGgG~AGl~aA~~L~~~g~~~~~V~vie~~~~~---~~~~~~-l~~~---~~----------------------  101 (469)
                      ++||+|||||++|+++|..|++.|+   +|+|+|+.+..   ...+.. +...   .+                      
T Consensus         2 ~~dV~IvGaG~aGl~~A~~L~~~G~---~v~v~E~~~~~~~~~~~~~g~l~~~~~~~l~~lg~~~~~~~~~~~~~~~~~~   78 (394)
T 1k0i_A            2 KTQVAIIGAGPSGLLLGQLLHKAGI---DNVILERQTPDYVLGRIRAGVLEQGMVDLLREAGVDRRMARDGLVHEGVEIA   78 (394)
T ss_dssp             BCSEEEECCSHHHHHHHHHHHHHTC---CEEEECSSCHHHHHTCCCCCEECHHHHHHHHHTTCCHHHHHHCEEESCEEEE
T ss_pred             CccEEEECCCHHHHHHHHHHHHCCC---CEEEEeCCCCCcccCCCceEeECHHHHHHHHHcCCcHHHHhcCCccceEEEE
Confidence            4799999999999999999999987   79999987631   000000 0000   00                      


Q ss_pred             CCCCCCCCCCC----CCccc-cC-CCCCCCCHhHHHHCCcEEEeCCcEEEEeCCC---cEEEe-CCCe--EEEeccEEec
Q 012165          102 FPLDKKPARLP----GFHTC-VG-SGGERQTPEWYKEKGIEMIYQDPVTSIDIEK---QTLIT-NSGK--LLKYGSLIVA  169 (469)
Q Consensus       102 ~~~~~~~~~~~----~~~~~-~~-~~~~~~~~~~~~~~~i~~~~~~~v~~id~~~---~~v~~-~~g~--~~~yd~lVlA  169 (469)
                      .........++    +.... .. ......+.+.+.+.+++++.+++|+++..++   ..|++ .+|+  ++.+|.||.|
T Consensus        79 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~~~~g~~i~~~~~v~~i~~~~~~~~~v~~~~~g~~~~~~a~~vV~A  158 (394)
T 1k0i_A           79 FAGQRRRIDLKRLSGGKTVTVYGQTEVTRDLMEAREACGATTVYQAAEVRLHDLQGERPYVTFERDGERLRLDCDYIAGC  158 (394)
T ss_dssp             ETTEEEEECHHHHHTSCCEEECCHHHHHHHHHHHHHHTTCEEESSCEEEEEECTTSSSCEEEEEETTEEEEEECSEEEEC
T ss_pred             ECCceEEeccccccCCCceEEechHHHHHHHHHHHHhcCCeEEeceeEEEEEEecCCceEEEEecCCcEEEEEeCEEEEC
Confidence            00000000000    00000 00 0000011223445699999999999997642   46776 6787  7999999999


Q ss_pred             cCCCCC
Q 012165          170 TGCTAS  175 (469)
Q Consensus       170 tG~~~~  175 (469)
                      +|....
T Consensus       159 dG~~S~  164 (394)
T 1k0i_A          159 DGFHGI  164 (394)
T ss_dssp             CCTTCS
T ss_pred             CCCCcH
Confidence            997653

>1y0p_A Fumarate reductase flavoprotein subunit; flavocytochrome, mesaconate, oxidoreductase; HET: HEM FAD; 1.50A {Shewanella frigidimarina} SCOP: a.138.1.3 c.3.1.4 d.168.1.1 PDB: 1qjd_A* 2b7s_A* 1jry_A* 2b7r_A* 1ksu_A* 1jrz_A* 1jrx_A* 1m64_A* 1p2h_A* 1p2e_A* 1kss_A* 1e39_A* 1q9i_A* 1lj1_A*

Probab=98.44  E-value=2.7e-07  Score=95.74  Aligned_cols=37  Identities=27%  Similarity=0.437  Sum_probs=33.6

Q ss_pred             CCCcEEEEcCcHHHHHHHHHHHHcCCCCCcEEEEcCCCCC
Q 012165           50 ENREFVIVGGGNAAGYAARTFVEHGMADGRLCIVSKEAYA   89 (469)
Q Consensus        50 ~~~~vvIIGgG~AGl~aA~~L~~~g~~~~~V~vie~~~~~   89 (469)
                      ..+||||||||+||++||..|++.|.   +|+|+|+.+..
T Consensus       125 ~~~DVvVVGaG~aGl~aA~~la~~G~---~V~vlEk~~~~  161 (571)
T 1y0p_A          125 DTVDVVVVGSGGAGFSAAISATDSGA---KVILIEKEPVI  161 (571)
T ss_dssp             EECSEEEECCSHHHHHHHHHHHHTTC---CEEEECSSSSS
T ss_pred             CCCCEEEECCCHHHHHHHHHHHHCCC---cEEEEeCCCCC
Confidence            46899999999999999999999987   79999998764

>1qo8_A Flavocytochrome C3 fumarate reductase; oxidoreductase; HET: HEM FAD; 2.15A {Shewanella frigidimarina} SCOP: a.138.1.3 c.3.1.4 d.168.1.1

Probab=98.44  E-value=2e-07  Score=96.65  Aligned_cols=38  Identities=24%  Similarity=0.417  Sum_probs=34.0

Q ss_pred             CCCCcEEEEcCcHHHHHHHHHHHHcCCCCCcEEEEcCCCCC
Q 012165           49 NENREFVIVGGGNAAGYAARTFVEHGMADGRLCIVSKEAYA   89 (469)
Q Consensus        49 ~~~~~vvIIGgG~AGl~aA~~L~~~g~~~~~V~vie~~~~~   89 (469)
                      ...+||||||||+||+++|..|++.|.   +|+|||+.+..
T Consensus       119 ~~~~DVvVVG~G~aGl~aA~~la~~G~---~V~vlEk~~~~  156 (566)
T 1qo8_A          119 SETTQVLVVGAGSAGFNASLAAKKAGA---NVILVDKAPFS  156 (566)
T ss_dssp             SEEEEEEEECCSHHHHHHHHHHHHHTC---CEEEECSSSSS
T ss_pred             CCCCCEEEECCCHHHHHHHHHHHHCCC---cEEEEeCCCCC
Confidence            356799999999999999999999987   79999998754

>2gqw_A Ferredoxin reductase; flavoprotein, oxidoreductase; HET: FAD; 1.40A {Pseudomonas SP} PDB: 1f3p_A* 1d7y_A* 2gr0_A* 2gr1_A* 2gr2_A* 2yvf_A* 2yvg_A* 2yvj_A* 2gr3_A*

Probab=98.43  E-value=3.5e-07  Score=90.72  Aligned_cols=97  Identities=19%  Similarity=0.306  Sum_probs=75.5

Q ss_pred             CCCcEEEEcCcHHHHHHHHHHHHcCCCCCcEEEEcCCCCCCCCCCCCcccccCCCCCCCCCCCCCccccCCCCCCCCHhH
Q 012165           50 ENREFVIVGGGNAAGYAARTFVEHGMADGRLCIVSKEAYAPYERPALTKGYLFPLDKKPARLPGFHTCVGSGGERQTPEW  129 (469)
Q Consensus        50 ~~~~vvIIGgG~AGl~aA~~L~~~g~~~~~V~vie~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  129 (469)
                      ..++++|||||+.|+.+|..|++.|.   +|+++++.+...   +   . .+   .   ..+           .....+.
T Consensus       144 ~~~~vvViGgG~~g~E~A~~l~~~g~---~Vtlv~~~~~~l---~---~-~~---~---~~~-----------~~~l~~~  196 (408)
T 2gqw_A          144 PQSRLLIVGGGVIGLELAATARTAGV---HVSLVETQPRLM---S---R-AA---P---ATL-----------ADFVARY  196 (408)
T ss_dssp             TTCEEEEECCSHHHHHHHHHHHHTTC---EEEEEESSSSSS---T---T-TS---C---HHH-----------HHHHHHH
T ss_pred             cCCeEEEECCCHHHHHHHHHHHhCCC---EEEEEEeCCccc---c---c-cc---C---HHH-----------HHHHHHH
Confidence            35799999999999999999999986   899999876421   0   0 00   0   000           0123466


Q ss_pred             HHHCCcEEEeCCcEEEEeCCCcEEEeCCCeEEEeccEEeccCCCCC
Q 012165          130 YKEKGIEMIYQDPVTSIDIEKQTLITNSGKLLKYGSLIVATGCTAS  175 (469)
Q Consensus       130 ~~~~~i~~~~~~~v~~id~~~~~v~~~~g~~~~yd~lVlAtG~~~~  175 (469)
                      +++.|++++.++++.+++ ++ .|++.+|+++++|.||+|+|.+|.
T Consensus       197 l~~~GV~i~~~~~v~~i~-~~-~v~~~~g~~i~~D~vi~a~G~~p~  240 (408)
T 2gqw_A          197 HAAQGVDLRFERSVTGSV-DG-VVLLDDGTRIAADMVVVGIGVLAN  240 (408)
T ss_dssp             HHHTTCEEEESCCEEEEE-TT-EEEETTSCEEECSEEEECSCEEEC
T ss_pred             HHHcCcEEEeCCEEEEEE-CC-EEEECCCCEEEcCEEEECcCCCcc
Confidence            788999999999999998 44 888999999999999999998875

>2uzz_A N-methyl-L-tryptophan oxidase; N-methyltryptophan oxidase (MTOX), oxidative demethylation of N-methyl-L-tryptophan, FAD, flavoenzyme; HET: FAD; 3.2A {Escherichia coli}

Probab=98.42  E-value=4.4e-07  Score=88.66  Aligned_cols=46  Identities=28%  Similarity=0.401  Sum_probs=36.1

Q ss_pred             HHHHCCcEEEeCCcEEEEeCCCc--EEEeCCCeEEEeccEEeccCCCCC
Q 012165          129 WYKEKGIEMIYQDPVTSIDIEKQ--TLITNSGKLLKYGSLIVATGCTAS  175 (469)
Q Consensus       129 ~~~~~~i~~~~~~~v~~id~~~~--~v~~~~g~~~~yd~lVlAtG~~~~  175 (469)
                      .+++.|++++.+++|+++..++.  .|++.+|+ +.+|+||+|+|....
T Consensus       158 ~~~~~G~~i~~~~~V~~i~~~~~~~~v~~~~g~-~~a~~vV~a~G~~s~  205 (372)
T 2uzz_A          158 LAKEAGCAQLFNCPVTAIRHDDDGVTIETADGE-YQAKKAIVCAGTWVK  205 (372)
T ss_dssp             HHHHTTCEEECSCCEEEEEECSSSEEEEESSCE-EEEEEEEECCGGGGG
T ss_pred             HHHHCCCEEEcCCEEEEEEEcCCEEEEEECCCe-EEcCEEEEcCCccHH
Confidence            34567999999999999976543  56677775 999999999997643

>3nrn_A Uncharacterized protein PF1083; alpha-beta protein, structural genomics, PSI-2, protein STRU initiative; HET: AMP; 2.10A {Pyrococcus furiosus}

Probab=98.41  E-value=2.8e-06  Score=84.57  Aligned_cols=51  Identities=16%  Similarity=0.299  Sum_probs=41.3

Q ss_pred             eeHHHHHHcCcEEEcCCeEEEEEeCCCCcEEEEEcCCCCEEeCCEEEEccCCccC
Q 012165          235 RYEQLYQQNGVKFVKGASIKNLEAGSDGRVAAVKLEDGSTIDADTIVIGIGAKPT  289 (469)
Q Consensus       235 ~~~~~l~~~gV~~~~~~~v~~i~~~~~~~v~~v~~~~g~~i~~D~vi~a~G~~p~  289 (469)
                      .+.+.+++.|+++++++.|++|+.+ ++++  | ..+|+++.+|.||+++|....
T Consensus       194 ~l~~~~~~~G~~i~~~~~V~~i~~~-~~~v--V-~~~g~~~~ad~Vv~a~~~~~~  244 (421)
T 3nrn_A          194 ELERIIMENKGKILTRKEVVEINIE-EKKV--Y-TRDNEEYSFDVAISNVGVRET  244 (421)
T ss_dssp             HHHHHHHTTTCEEESSCCEEEEETT-TTEE--E-ETTCCEEECSEEEECSCHHHH
T ss_pred             HHHHHHHHCCCEEEcCCeEEEEEEE-CCEE--E-EeCCcEEEeCEEEECCCHHHH
Confidence            4567788899999999999999853 4554  4 567889999999999997643

>3ka7_A Oxidoreductase; structural genomics, PSI-2, protein structure initiative, northeast structural genomics consortium, NESG; HET: FAD; 1.80A {Methanosarcina mazei}

Probab=98.41  E-value=1.4e-06  Score=86.82  Aligned_cols=53  Identities=23%  Similarity=0.397  Sum_probs=43.1

Q ss_pred             eeHHHHHHcCcEEEcCCeEEEEEeCCCCcEEEEEcCCCCEEeCCEEEEccCCccC
Q 012165          235 RYEQLYQQNGVKFVKGASIKNLEAGSDGRVAAVKLEDGSTIDADTIVIGIGAKPT  289 (469)
Q Consensus       235 ~~~~~l~~~gV~~~~~~~v~~i~~~~~~~v~~v~~~~g~~i~~D~vi~a~G~~p~  289 (469)
                      .+.+.+++.|+++++++.|++|..+ ++++.+|.++ |+++.+|.||+++|....
T Consensus       201 ~l~~~~~~~G~~i~~~~~V~~i~~~-~~~~~gv~~~-g~~~~ad~VV~a~~~~~~  253 (425)
T 3ka7_A          201 ALETVISANGGKIHTGQEVSKILIE-NGKAAGIIAD-DRIHDADLVISNLGHAAT  253 (425)
T ss_dssp             HHHHHHHHTTCEEECSCCEEEEEEE-TTEEEEEEET-TEEEECSEEEECSCHHHH
T ss_pred             HHHHHHHHcCCEEEECCceeEEEEE-CCEEEEEEEC-CEEEECCEEEECCCHHHH
Confidence            5567788899999999999999864 5666667764 778999999999997543

>2v3a_A Rubredoxin reductase; alkane degradation, NADH oxidoreductase, rubredoxin reductas NAD, flavoprotein, oxidoreductase; HET: FAD; 2.4A {Pseudomonas aeruginosa} PDB: 2v3b_A*

Probab=98.40  E-value=4.9e-07  Score=88.95  Aligned_cols=98  Identities=13%  Similarity=0.179  Sum_probs=75.0

Q ss_pred             CCcEEEEcCcHHHHHHHHHHHHcCCCCCcEEEEcCCCCCCCCCCCCcccccCCCCCCCCCCCCCccccCCCCCCCCHhHH
Q 012165           51 NREFVIVGGGNAAGYAARTFVEHGMADGRLCIVSKEAYAPYERPALTKGYLFPLDKKPARLPGFHTCVGSGGERQTPEWY  130 (469)
Q Consensus        51 ~~~vvIIGgG~AGl~aA~~L~~~g~~~~~V~vie~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  130 (469)
                      .++++|||||+.|+.+|..|++.|.   +|+++++.+.+.-   .    .+      ...+           .....+.+
T Consensus       145 ~~~v~ViGgG~~g~e~A~~l~~~g~---~Vtlv~~~~~~~~---~----~~------~~~~-----------~~~l~~~l  197 (384)
T 2v3a_A          145 KRRVLLLGAGLIGCEFANDLSSGGY---QLDVVAPCEQVMP---G----LL------HPAA-----------AKAVQAGL  197 (384)
T ss_dssp             CCEEEEECCSHHHHHHHHHHHHTTC---EEEEEESSSSSST---T----TS------CHHH-----------HHHHHHHH
T ss_pred             CCeEEEECCCHHHHHHHHHHHhCCC---eEEEEecCcchhh---c----cc------CHHH-----------HHHHHHHH
Confidence            5899999999999999999999986   8999998764210   0    00      0000           11234567


Q ss_pred             HHCCcEEEeCCcEEEEeCCCc--EEEeCCCeEEEeccEEeccCCCCC
Q 012165          131 KEKGIEMIYQDPVTSIDIEKQ--TLITNSGKLLKYGSLIVATGCTAS  175 (469)
Q Consensus       131 ~~~~i~~~~~~~v~~id~~~~--~v~~~~g~~~~yd~lVlAtG~~~~  175 (469)
                      ++.|++++.+++|.+++.++.  .+++.+|+++++|.||+|+|.+|.
T Consensus       198 ~~~gv~i~~~~~v~~i~~~~~~~~v~~~~g~~i~~d~vv~a~G~~p~  244 (384)
T 2v3a_A          198 EGLGVRFHLGPVLASLKKAGEGLEAHLSDGEVIPCDLVVSAVGLRPR  244 (384)
T ss_dssp             HTTTCEEEESCCEEEEEEETTEEEEEETTSCEEEESEEEECSCEEEC
T ss_pred             HHcCCEEEeCCEEEEEEecCCEEEEEECCCCEEECCEEEECcCCCcC
Confidence            788999999999999976543  677888989999999999998875

>3axb_A Putative oxidoreductase; dinucleotide-binding fold; HET: FAD; 1.92A {Aeropyrum pernix} PDB: 3vqr_A*

Probab=98.40  E-value=4e-07  Score=91.52  Aligned_cols=60  Identities=25%  Similarity=0.428  Sum_probs=45.0

Q ss_pred             eHHHHHHcCcEEEcCCeEEEEEeC--------------CCCcEEEEEcCCCCEE--eCCEEEEccCCccCCchhhhcC
Q 012165          236 YEQLYQQNGVKFVKGASIKNLEAG--------------SDGRVAAVKLEDGSTI--DADTIVIGIGAKPTVSPFERVG  297 (469)
Q Consensus       236 ~~~~l~~~gV~~~~~~~v~~i~~~--------------~~~~v~~v~~~~g~~i--~~D~vi~a~G~~p~~~~~~~~g  297 (469)
                      +.+.+++.|++++.+++|++++.+              +++.+..|.+.+| ++  .+|.||+|+|.... .++..++
T Consensus       187 L~~~~~~~Gv~i~~~~~V~~i~~~~~~~~~~~~~~~~~~~~~v~~V~t~~g-~i~~~Ad~VV~AtG~~s~-~l~~~~g  262 (448)
T 3axb_A          187 YYRRASGAGVEFIFGRRVVGVELKPRVELGIEGEPLPWQEARASAAVLSDG-TRVEVGEKLVVAAGVWSN-RLLNPLG  262 (448)
T ss_dssp             HHHHHHHTTCEEEESCCEEEEEEEESSCCCCTTSSCTTSCEEEEEEEETTS-CEEEEEEEEEECCGGGHH-HHHGGGT
T ss_pred             HHHHHHhCCCEEEcCCeEEEEEecccccccccccccccCCCceEEEEeCCC-EEeecCCEEEECCCcCHH-HHHHHcC
Confidence            456677889999999999999861              3455667888888 68  99999999997643 3444433

>2r9z_A Glutathione amide reductase; NAD, FAD, substrate specificity, oxidoreductase; HET: FAD; 2.10A {Marichromatium gracile} PDB: 2rab_A*

Probab=98.39  E-value=4e-07  Score=91.92  Aligned_cols=99  Identities=21%  Similarity=0.277  Sum_probs=76.0

Q ss_pred             CCCcEEEEcCcHHHHHHHHHHHHcCCCCCcEEEEcCCCCCCCCCCCCcccccCCCCCCCCCCCCCccccCCCCCCCCHhH
Q 012165           50 ENREFVIVGGGNAAGYAARTFVEHGMADGRLCIVSKEAYAPYERPALTKGYLFPLDKKPARLPGFHTCVGSGGERQTPEW  129 (469)
Q Consensus        50 ~~~~vvIIGgG~AGl~aA~~L~~~g~~~~~V~vie~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  129 (469)
                      ..++++|||||+.|+.+|..|++.|.   +|+++++.+...   +.+..           .+           .....+.
T Consensus       165 ~~~~vvVvGgG~~g~e~A~~l~~~G~---~Vtlv~~~~~~l---~~~~~-----------~~-----------~~~l~~~  216 (463)
T 2r9z_A          165 QPKRVAIIGAGYIGIELAGLLRSFGS---EVTVVALEDRLL---FQFDP-----------LL-----------SATLAEN  216 (463)
T ss_dssp             CCSEEEEECCSHHHHHHHHHHHHTTC---EEEEECSSSSSS---TTSCH-----------HH-----------HHHHHHH
T ss_pred             cCCEEEEECCCHHHHHHHHHHHhcCC---EEEEEEcCCccc---cccCH-----------HH-----------HHHHHHH
Confidence            35799999999999999999999986   899999775421   00000           00           0123566


Q ss_pred             HHHCCcEEEeCCcEEEEeCCC--cEEEeCCCe-EEEeccEEeccCCCCCc
Q 012165          130 YKEKGIEMIYQDPVTSIDIEK--QTLITNSGK-LLKYGSLIVATGCTASR  176 (469)
Q Consensus       130 ~~~~~i~~~~~~~v~~id~~~--~~v~~~~g~-~~~yd~lVlAtG~~~~~  176 (469)
                      +++.|++++.+++|.+++.++  ..|++.+|+ ++++|.||+|+|.+|..
T Consensus       217 l~~~gv~i~~~~~v~~i~~~~~~~~v~~~~G~~~i~~D~vv~a~G~~p~~  266 (463)
T 2r9z_A          217 MHAQGIETHLEFAVAALERDAQGTTLVAQDGTRLEGFDSVIWAVGRAPNT  266 (463)
T ss_dssp             HHHTTCEEESSCCEEEEEEETTEEEEEETTCCEEEEESEEEECSCEEESC
T ss_pred             HHHCCCEEEeCCEEEEEEEeCCeEEEEEeCCcEEEEcCEEEECCCCCcCC
Confidence            788999999999999998643  467888898 89999999999988763

>3nyc_A D-arginine dehydrogenase; FAD, imino-arginine, oxidoreductas; HET: FAD IAR; 1.06A {Pseudomonas aeruginosa} PDB: 3nye_A* 3nyf_A* 3sm8_A*

Probab=98.39  E-value=4.3e-07  Score=88.92  Aligned_cols=45  Identities=11%  Similarity=0.124  Sum_probs=35.5

Q ss_pred             HHHHCCcEEEeCCcEEEEeCCCc--EEEeCCCeEEEeccEEeccCCCC
Q 012165          129 WYKEKGIEMIYQDPVTSIDIEKQ--TLITNSGKLLKYGSLIVATGCTA  174 (469)
Q Consensus       129 ~~~~~~i~~~~~~~v~~id~~~~--~v~~~~g~~~~yd~lVlAtG~~~  174 (469)
                      .+++.|++++.+++|+++..++.  .|++.+| ++.+|+||+|+|...
T Consensus       163 ~a~~~Gv~i~~~~~V~~i~~~~~~~~V~t~~g-~i~a~~VV~A~G~~s  209 (381)
T 3nyc_A          163 GIRRNQGQVLCNHEALEIRRVDGAWEVRCDAG-SYRAAVLVNAAGAWC  209 (381)
T ss_dssp             HHHHTTCEEESSCCCCEEEEETTEEEEECSSE-EEEESEEEECCGGGH
T ss_pred             HHHHCCCEEEcCCEEEEEEEeCCeEEEEeCCC-EEEcCEEEECCChhH
Confidence            34567999999999999876544  4666666 799999999999753

>1ges_A Glutathione reductase; oxidoreductase(flavoenzyme); HET: FAD; 1.74A {Escherichia coli} SCOP: c.3.1.5 c.3.1.5 d.87.1.1 PDB: 1geu_A* 1ger_A* 1get_A*

Probab=98.39  E-value=4.2e-07  Score=91.41  Aligned_cols=98  Identities=14%  Similarity=0.120  Sum_probs=75.8

Q ss_pred             CCCcEEEEcCcHHHHHHHHHHHHcCCCCCcEEEEcCCCCCCCCCCCCcccccCCCCCCCCCCCCCccccCCCCCCCCHhH
Q 012165           50 ENREFVIVGGGNAAGYAARTFVEHGMADGRLCIVSKEAYAPYERPALTKGYLFPLDKKPARLPGFHTCVGSGGERQTPEW  129 (469)
Q Consensus        50 ~~~~vvIIGgG~AGl~aA~~L~~~g~~~~~V~vie~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  129 (469)
                      ..++++|||||+.|+.+|..|++.|.   +|+++++.+...   +.+..           .+           .....+.
T Consensus       166 ~~~~vvViGgG~~g~e~A~~l~~~g~---~Vtlv~~~~~~l---~~~~~-----------~~-----------~~~l~~~  217 (450)
T 1ges_A          166 LPERVAVVGAGYIGVELGGVINGLGA---KTHLFEMFDAPL---PSFDP-----------MI-----------SETLVEV  217 (450)
T ss_dssp             CCSEEEEECCSHHHHHHHHHHHHTTC---EEEEECSSSSSS---TTSCH-----------HH-----------HHHHHHH
T ss_pred             cCCeEEEECCCHHHHHHHHHHHhcCC---EEEEEEeCCchh---hhhhH-----------HH-----------HHHHHHH
Confidence            35799999999999999999999986   899999875421   00000           00           1123566


Q ss_pred             HHHCCcEEEeCCcEEEEeCCC---cEEEeCCCeEEEeccEEeccCCCCC
Q 012165          130 YKEKGIEMIYQDPVTSIDIEK---QTLITNSGKLLKYGSLIVATGCTAS  175 (469)
Q Consensus       130 ~~~~~i~~~~~~~v~~id~~~---~~v~~~~g~~~~yd~lVlAtG~~~~  175 (469)
                      +++.|++++.+++|.+++.++   ..|++.+|+++++|.||+|+|.+|.
T Consensus       218 l~~~Gv~i~~~~~v~~i~~~~~~~~~v~~~~g~~i~~D~vv~a~G~~p~  266 (450)
T 1ges_A          218 MNAEGPQLHTNAIPKAVVKNTDGSLTLELEDGRSETVDCLIWAIGREPA  266 (450)
T ss_dssp             HHHHSCEEECSCCEEEEEECTTSCEEEEETTSCEEEESEEEECSCEEES
T ss_pred             HHHCCCEEEeCCEEEEEEEeCCcEEEEEECCCcEEEcCEEEECCCCCcC
Confidence            778899999999999998653   3788889988999999999998876

>1lvl_A Dihydrolipoamide dehydrogenase; oxidoreductase; HET: FAD NAD; 2.45A {Pseudomonas putida} SCOP: c.3.1.5 c.3.1.5 d.87.1.1

Probab=98.36  E-value=3.3e-07  Score=92.36  Aligned_cols=97  Identities=22%  Similarity=0.305  Sum_probs=72.7

Q ss_pred             CCCcEEEEcCcHHHHHHHHHHHHcCCCCCcEEEEcCCCCCCCCCCCCcccccCCCCCCCCCCCCCccccCCCCCCCCHhH
Q 012165           50 ENREFVIVGGGNAAGYAARTFVEHGMADGRLCIVSKEAYAPYERPALTKGYLFPLDKKPARLPGFHTCVGSGGERQTPEW  129 (469)
Q Consensus        50 ~~~~vvIIGgG~AGl~aA~~L~~~g~~~~~V~vie~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  129 (469)
                      ..++++|||||++|+.+|..|++.|.   +|+++++.+...   |.+..           .+           .....+.
T Consensus       170 ~~~~vvViGgG~~g~e~A~~l~~~g~---~Vtlv~~~~~~l---~~~~~-----------~~-----------~~~l~~~  221 (458)
T 1lvl_A          170 LPQHLVVVGGGYIGLELGIAYRKLGA---QVSVVEARERIL---PTYDS-----------EL-----------TAPVAES  221 (458)
T ss_dssp             CCSEEEEECCSHHHHHHHHHHHHHTC---EEEEECSSSSSS---TTSCH-----------HH-----------HHHHHHH
T ss_pred             cCCeEEEECcCHHHHHHHHHHHHCCC---eEEEEEcCCccc---cccCH-----------HH-----------HHHHHHH
Confidence            35799999999999999999999986   899999876431   10000           00           0123456


Q ss_pred             HHHCCcEEEeCCcEEEEeCCCcEEEeC--CC--eEEEeccEEeccCCCCCc
Q 012165          130 YKEKGIEMIYQDPVTSIDIEKQTLITN--SG--KLLKYGSLIVATGCTASR  176 (469)
Q Consensus       130 ~~~~~i~~~~~~~v~~id~~~~~v~~~--~g--~~~~yd~lVlAtG~~~~~  176 (469)
                      +++.|++++.+++|.+++. +. +.+.  +|  +++++|.||+|+|.+|..
T Consensus       222 l~~~gv~i~~~~~v~~i~~-~~-v~v~~~~G~~~~i~~D~vv~a~G~~p~~  270 (458)
T 1lvl_A          222 LKKLGIALHLGHSVEGYEN-GC-LLANDGKGGQLRLEADRVLVAVGRRPRT  270 (458)
T ss_dssp             HHHHTCEEETTCEEEEEET-TE-EEEECSSSCCCEECCSCEEECCCEEECC
T ss_pred             HHHCCCEEEECCEEEEEEe-CC-EEEEECCCceEEEECCEEEECcCCCcCC
Confidence            7888999999999999987 43 4333  56  579999999999988763

>1xhc_A NADH oxidase /nitrite reductase; southe collaboratory for structural genomics, secsg, hyperthermoph protein structure initiative, PSI; HET: FAD; 2.35A {Pyrococcus furiosus} SCOP: c.3.1.5 c.3.1.5 d.87.1.1

Probab=98.35  E-value=4.7e-07  Score=88.48  Aligned_cols=92  Identities=22%  Similarity=0.336  Sum_probs=72.9

Q ss_pred             CcEEEEcCcHHHHHHHHHHHHcCCCCCcEEEEcCCCCCCCCCCCCcccccCCCCCCCCCCCCCccccCCCCCCCCHhHHH
Q 012165           52 REFVIVGGGNAAGYAARTFVEHGMADGRLCIVSKEAYAPYERPALTKGYLFPLDKKPARLPGFHTCVGSGGERQTPEWYK  131 (469)
Q Consensus        52 ~~vvIIGgG~AGl~aA~~L~~~g~~~~~V~vie~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  131 (469)
                      ++++|||||+.|+.+|..|++.|.   +|+++++.+...   + +..           .+           .....+.++
T Consensus       144 ~~vvViGgG~~g~E~A~~l~~~g~---~Vtlv~~~~~~l---~-~~~-----------~~-----------~~~l~~~l~  194 (367)
T 1xhc_A          144 GEAIIIGGGFIGLELAGNLAEAGY---HVKLIHRGAMFL---G-LDE-----------EL-----------SNMIKDMLE  194 (367)
T ss_dssp             SEEEEEECSHHHHHHHHHHHHTTC---EEEEECSSSCCT---T-CCH-----------HH-----------HHHHHHHHH
T ss_pred             CcEEEECCCHHHHHHHHHHHhCCC---EEEEEeCCCeec---c-CCH-----------HH-----------HHHHHHHHH
Confidence            789999999999999999999986   899999876421   0 100           00           112456678


Q ss_pred             HCCcEEEeCCcEEEEeCCCcEEEeCCCeEEEeccEEeccCCCCC
Q 012165          132 EKGIEMIYQDPVTSIDIEKQTLITNSGKLLKYGSLIVATGCTAS  175 (469)
Q Consensus       132 ~~~i~~~~~~~v~~id~~~~~v~~~~g~~~~yd~lVlAtG~~~~  175 (469)
                      +.|++++.++++.+++  ...|++++|+ +++|.+|+|+|.+|.
T Consensus       195 ~~gV~i~~~~~v~~i~--~~~v~~~~g~-i~~D~vi~a~G~~p~  235 (367)
T 1xhc_A          195 ETGVKFFLNSELLEAN--EEGVLTNSGF-IEGKVKICAIGIVPN  235 (367)
T ss_dssp             HTTEEEECSCCEEEEC--SSEEEETTEE-EECSCEEEECCEEEC
T ss_pred             HCCCEEEcCCEEEEEE--eeEEEECCCE-EEcCEEEECcCCCcC
Confidence            8999999999999998  3468888888 999999999998875

>2eq6_A Pyruvate dehydrogenase complex, dihydrolipoamide dehydrogenase E3 component; oxidoreductase, homodimer, structural genomics, NPPSFA; HET: FAD; 1.60A {Thermus thermophilus} PDB: 2eq8_A* 2eq9_A*

Probab=98.34  E-value=5e-07  Score=91.22  Aligned_cols=97  Identities=12%  Similarity=0.222  Sum_probs=73.2

Q ss_pred             CCcEEEEcCcHHHHHHHHHHHHcCCCCCcEEEEcCCCCCCCCCCCCcccccCCCCCCCCCCCCCccccCCCCCCCCHhHH
Q 012165           51 NREFVIVGGGNAAGYAARTFVEHGMADGRLCIVSKEAYAPYERPALTKGYLFPLDKKPARLPGFHTCVGSGGERQTPEWY  130 (469)
Q Consensus        51 ~~~vvIIGgG~AGl~aA~~L~~~g~~~~~V~vie~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  130 (469)
                      .++++|||||+.|+.+|..|++.|.   +|+|+++.+...   +.+.           ..+           .....+.+
T Consensus       169 ~~~vvViGgG~~g~e~A~~l~~~g~---~Vtlv~~~~~~l---~~~~-----------~~~-----------~~~l~~~l  220 (464)
T 2eq6_A          169 PKRLLVIGGGAVGLELGQVYRRLGA---EVTLIEYMPEIL---PQGD-----------PET-----------AALLRRAL  220 (464)
T ss_dssp             CSEEEEECCSHHHHHHHHHHHHTTC---EEEEECSSSSSS---TTSC-----------HHH-----------HHHHHHHH
T ss_pred             CCEEEEECCCHHHHHHHHHHHHCCC---eEEEEEcCCccc---cccC-----------HHH-----------HHHHHHHH
Confidence            4799999999999999999999986   899999876421   0000           000           11234667


Q ss_pred             HHCCcEEEeCCcEEEEeCCCc--EEEeC-C--Ce--EEEeccEEeccCCCCC
Q 012165          131 KEKGIEMIYQDPVTSIDIEKQ--TLITN-S--GK--LLKYGSLIVATGCTAS  175 (469)
Q Consensus       131 ~~~~i~~~~~~~v~~id~~~~--~v~~~-~--g~--~~~yd~lVlAtG~~~~  175 (469)
                      ++.|++++.+++|.+++.++.  .+++. +  |+  ++++|.||+|+|.+|.
T Consensus       221 ~~~gV~i~~~~~v~~i~~~~~~~~v~~~~~~~g~~~~i~~D~vv~a~G~~p~  272 (464)
T 2eq6_A          221 EKEGIRVRTKTKAVGYEKKKDGLHVRLEPAEGGEGEEVVVDKVLVAVGRKPR  272 (464)
T ss_dssp             HHTTCEEECSEEEEEEEEETTEEEEEEEETTCCSCEEEEESEEEECSCEEES
T ss_pred             HhcCCEEEcCCEEEEEEEeCCEEEEEEeecCCCceeEEEcCEEEECCCcccC
Confidence            889999999999999986553  45554 5  66  7999999999998876

>4eqs_A Coenzyme A disulfide reductase; oxidoreductase; HET: COA FAD; 1.50A {Staphylococcus aureus subsp} PDB: 1yqz_A* 4eqw_A* 4em4_A* 4em3_A* 4eqr_A* 4emw_A* 4eqx_A*

Probab=98.34  E-value=1e-06  Score=88.14  Aligned_cols=95  Identities=15%  Similarity=0.274  Sum_probs=75.3

Q ss_pred             CCcEEEEcCcHHHHHHHHHHHHcCCCCCcEEEEcCCCCCCCCCCCCcccccCCCCCCCCCCCCCccccCCCCCCCCHhHH
Q 012165           51 NREFVIVGGGNAAGYAARTFVEHGMADGRLCIVSKEAYAPYERPALTKGYLFPLDKKPARLPGFHTCVGSGGERQTPEWY  130 (469)
Q Consensus        51 ~~~vvIIGgG~AGl~aA~~L~~~g~~~~~V~vie~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  130 (469)
                      .++++|||||+.|+.+|..+++.|.   +|++++..+...           ...+.   .+           .....+.+
T Consensus       147 ~~~vvViGgG~ig~E~A~~l~~~g~---~Vtlv~~~~~ll-----------~~~d~---~~-----------~~~~~~~l  198 (437)
T 4eqs_A          147 VDKVLVVGAGYVSLEVLENLYERGL---HPTLIHRSDKIN-----------KLMDA---DM-----------NQPILDEL  198 (437)
T ss_dssp             CCEEEEECCSHHHHHHHHHHHHHTC---EEEEEESSSCCS-----------TTSCG---GG-----------GHHHHHHH
T ss_pred             CcEEEEECCccchhhhHHHHHhcCC---cceeeeeecccc-----------ccccc---hh-----------HHHHHHHh
Confidence            5689999999999999999999986   899999775421           00000   00           12345678


Q ss_pred             HHCCcEEEeCCcEEEEeCCCcEEEeCCCeEEEeccEEeccCCCCC
Q 012165          131 KEKGIEMIYQDPVTSIDIEKQTLITNSGKLLKYGSLIVATGCTAS  175 (469)
Q Consensus       131 ~~~~i~~~~~~~v~~id~~~~~v~~~~g~~~~yd~lVlAtG~~~~  175 (469)
                      ++.+|+++.+++|.+++.  ..+++++|+++++|.+++|+|.+|.
T Consensus       199 ~~~gV~i~~~~~v~~~~~--~~v~~~~g~~~~~D~vl~a~G~~Pn  241 (437)
T 4eqs_A          199 DKREIPYRLNEEINAING--NEITFKSGKVEHYDMIIEGVGTHPN  241 (437)
T ss_dssp             HHTTCCEEESCCEEEEET--TEEEETTSCEEECSEEEECCCEEES
T ss_pred             hccceEEEeccEEEEecC--CeeeecCCeEEeeeeEEEEeceecC
Confidence            899999999999998874  5688999999999999999998875

>3lxd_A FAD-dependent pyridine nucleotide-disulphide oxidoreductase; glutathione reductase (GR)-like ONFR; HET: FAD; 2.50A {Novosphingobium aromaticivorans}

Probab=98.34  E-value=8.8e-07  Score=88.07  Aligned_cols=98  Identities=14%  Similarity=0.216  Sum_probs=75.9

Q ss_pred             CCcEEEEcCcHHHHHHHHHHHHcCCCCCcEEEEcCCCCCCCCCCCCcccccCCCCCCCCCCCCCccccCCCCCCCCHhHH
Q 012165           51 NREFVIVGGGNAAGYAARTFVEHGMADGRLCIVSKEAYAPYERPALTKGYLFPLDKKPARLPGFHTCVGSGGERQTPEWY  130 (469)
Q Consensus        51 ~~~vvIIGgG~AGl~aA~~L~~~g~~~~~V~vie~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  130 (469)
                      .++++|||+|+.|+.+|..|++.|.   +|++++..+.+.-.       .+      ...+           .....+.+
T Consensus       152 ~~~vvViGgG~~g~e~A~~l~~~g~---~Vtvv~~~~~~l~~-------~~------~~~~-----------~~~l~~~l  204 (415)
T 3lxd_A          152 AKNAVVIGGGYIGLEAAAVLTKFGV---NVTLLEALPRVLAR-------VA------GEAL-----------SEFYQAEH  204 (415)
T ss_dssp             CCEEEEECCSHHHHHHHHHHHHTTC---EEEEEESSSSTTTT-------TS------CHHH-----------HHHHHHHH
T ss_pred             CCeEEEECCCHHHHHHHHHHHhcCC---eEEEEecCCchhhh-------hc------CHHH-----------HHHHHHHH
Confidence            6799999999999999999999986   89999987653100       00      0000           11234567


Q ss_pred             HHCCcEEEeCCcEEEEeCCCc---EEEeCCCeEEEeccEEeccCCCCC
Q 012165          131 KEKGIEMIYQDPVTSIDIEKQ---TLITNSGKLLKYGSLIVATGCTAS  175 (469)
Q Consensus       131 ~~~~i~~~~~~~v~~id~~~~---~v~~~~g~~~~yd~lVlAtG~~~~  175 (469)
                      ++.|++++.++.|.++..++.   .|.+.+|+++++|.+|+|+|..|.
T Consensus       205 ~~~GV~i~~~~~v~~i~~~~~~v~~v~l~dG~~i~aD~Vv~a~G~~p~  252 (415)
T 3lxd_A          205 RAHGVDLRTGAAMDCIEGDGTKVTGVRMQDGSVIPADIVIVGIGIVPC  252 (415)
T ss_dssp             HHTTCEEEETCCEEEEEESSSBEEEEEESSSCEEECSEEEECSCCEES
T ss_pred             HhCCCEEEECCEEEEEEecCCcEEEEEeCCCCEEEcCEEEECCCCccC
Confidence            889999999999999987542   578899999999999999998875

>1nhp_A NADH peroxidase; oxidoreductase (H2O2(A)); HET: FAD; 2.00A {Enterococcus faecalis} SCOP: c.3.1.5 c.3.1.5 d.87.1.1 PDB: 1npx_A* 1joa_A* 2npx_A* 1nhq_A* 1nhs_A* 1nhr_A* 1f8w_A*

Probab=98.33  E-value=8.2e-07  Score=89.20  Aligned_cols=98  Identities=18%  Similarity=0.269  Sum_probs=73.5

Q ss_pred             CCCcEEEEcCcHHHHHHHHHHHHcCCCCCcEEEEcCCCCCCCCCCCCcccccCCCCCCCCCCCCCccccCCCCCCCCHhH
Q 012165           50 ENREFVIVGGGNAAGYAARTFVEHGMADGRLCIVSKEAYAPYERPALTKGYLFPLDKKPARLPGFHTCVGSGGERQTPEW  129 (469)
Q Consensus        50 ~~~~vvIIGgG~AGl~aA~~L~~~g~~~~~V~vie~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  129 (469)
                      ..++++|||||++|+.+|..|++.|.   +|+++++.+...-      . .+   .   ..+           .....+.
T Consensus       148 ~~~~vvIiG~G~~g~e~A~~l~~~g~---~Vtlv~~~~~~l~------~-~~---~---~~~-----------~~~l~~~  200 (447)
T 1nhp_A          148 EVNNVVVIGSGYIGIEAAEAFAKAGK---KVTVIDILDRPLG------V-YL---D---KEF-----------TDVLTEE  200 (447)
T ss_dssp             TCCEEEEECCSHHHHHHHHHHHHTTC---EEEEEESSSSTTT------T-TC---C---HHH-----------HHHHHHH
T ss_pred             CCCeEEEECCCHHHHHHHHHHHHCCC---eEEEEecCccccc------c-cC---C---HHH-----------HHHHHHH
Confidence            46899999999999999999999986   8999998764210      0 00   0   000           1123456


Q ss_pred             HHHCCcEEEeCCcEEEEeCCCc--EEEeCCCeEEEeccEEeccCCCCC
Q 012165          130 YKEKGIEMIYQDPVTSIDIEKQ--TLITNSGKLLKYGSLIVATGCTAS  175 (469)
Q Consensus       130 ~~~~~i~~~~~~~v~~id~~~~--~v~~~~g~~~~yd~lVlAtG~~~~  175 (469)
                      +++.|++++.+++|.+++.+++  .+.+ ++.++++|.||+|+|.+|.
T Consensus       201 l~~~gv~i~~~~~v~~i~~~~~v~~v~~-~~~~i~~d~vi~a~G~~p~  247 (447)
T 1nhp_A          201 MEANNITIATGETVERYEGDGRVQKVVT-DKNAYDADLVVVAVGVRPN  247 (447)
T ss_dssp             HHTTTEEEEESCCEEEEECSSBCCEEEE-SSCEEECSEEEECSCEEES
T ss_pred             HHhCCCEEEcCCEEEEEEccCcEEEEEE-CCCEEECCEEEECcCCCCC
Confidence            7788999999999999987643  3555 4567999999999998875

>1onf_A GR, grase, glutathione reductase; oxidoreductase; HET: FAD; 2.60A {Plasmodium falciparum} SCOP: c.3.1.5 c.3.1.5 d.87.1.1

Probab=98.33  E-value=9.7e-07  Score=89.97  Aligned_cols=98  Identities=14%  Similarity=0.196  Sum_probs=76.0

Q ss_pred             CCcEEEEcCcHHHHHHHHHHHHcCCCCCcEEEEcCCCCCCCCCCCCcccccCCCCCCCCCCCCCccccCCCCCCCCHhHH
Q 012165           51 NREFVIVGGGNAAGYAARTFVEHGMADGRLCIVSKEAYAPYERPALTKGYLFPLDKKPARLPGFHTCVGSGGERQTPEWY  130 (469)
Q Consensus        51 ~~~vvIIGgG~AGl~aA~~L~~~g~~~~~V~vie~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  130 (469)
                      .++++|||||+.|+.+|..|++.|.   +|+++++.+...   +.+..           .+           .....+.+
T Consensus       176 ~~~vvViGgG~ig~E~A~~l~~~g~---~Vtlv~~~~~~l---~~~d~-----------~~-----------~~~l~~~l  227 (500)
T 1onf_A          176 SKKIGIVGSGYIAVELINVIKRLGI---DSYIFARGNRIL---RKFDE-----------SV-----------INVLENDM  227 (500)
T ss_dssp             CSEEEEECCSHHHHHHHHHHHTTTC---EEEEECSSSSSC---TTSCH-----------HH-----------HHHHHHHH
T ss_pred             CCeEEEECChHHHHHHHHHHHHcCC---eEEEEecCCccC---cccch-----------hh-----------HHHHHHHH
Confidence            6799999999999999999999886   899999875421   11100           00           11235667


Q ss_pred             HHCCcEEEeCCcEEEEeCCC---cEEEeCCCeE-EEeccEEeccCCCCCc
Q 012165          131 KEKGIEMIYQDPVTSIDIEK---QTLITNSGKL-LKYGSLIVATGCTASR  176 (469)
Q Consensus       131 ~~~~i~~~~~~~v~~id~~~---~~v~~~~g~~-~~yd~lVlAtG~~~~~  176 (469)
                      ++.|+++++++++.+++.+.   ..+.+.+|++ +++|.||+|+|.+|..
T Consensus       228 ~~~gv~i~~~~~v~~i~~~~~~~~~v~~~~g~~~~~~D~vi~a~G~~p~~  277 (500)
T 1onf_A          228 KKNNINIVTFADVVEIKKVSDKNLSIHLSDGRIYEHFDHVIYCVGRSPDT  277 (500)
T ss_dssp             HHTTCEEECSCCEEEEEESSTTCEEEEETTSCEEEEESEEEECCCBCCTT
T ss_pred             HhCCCEEEECCEEEEEEEcCCceEEEEECCCcEEEECCEEEECCCCCcCC
Confidence            88999999999999998643   3678888887 9999999999988763

>2gf3_A MSOX, monomeric sarcosine oxidase; flavoprotein oxidase, inhibitor 2-furoic acid, oxidoreductas; HET: FAD; 1.30A {Bacillus SP} SCOP: c.3.1.2 d.16.1.3 PDB: 1el7_A* 1el8_A* 1el9_A* 1eli_A* 1l9e_A* 2a89_A* 2gb0_A* 1el5_A* 3qse_A* 3qsm_A* 3qss_A* 3bhk_A* 3bhf_A* 3m12_A* 3m13_A* 3m0o_A* 1l9c_A* 1l9d_A* 1zov_A*

Probab=98.33  E-value=4e-07  Score=89.46  Aligned_cols=37  Identities=16%  Similarity=0.290  Sum_probs=32.9

Q ss_pred             CCCcEEEEcCcHHHHHHHHHHHHcCCCCCcEEEEcCCCCC
Q 012165           50 ENREFVIVGGGNAAGYAARTFVEHGMADGRLCIVSKEAYA   89 (469)
Q Consensus        50 ~~~~vvIIGgG~AGl~aA~~L~~~g~~~~~V~vie~~~~~   89 (469)
                      +++||+|||||++|+++|..|+++|.   +|+|+|+....
T Consensus         2 ~~~dvvIIGaG~~Gl~~A~~La~~G~---~V~vie~~~~~   38 (389)
T 2gf3_A            2 THFDVIVVGAGSMGMAAGYQLAKQGV---KTLLVDAFDPP   38 (389)
T ss_dssp             CCEEEEEECCSHHHHHHHHHHHHTTC---CEEEECSSCSS
T ss_pred             CcCCEEEECCCHHHHHHHHHHHhCCC---eEEEEeCCCCC
Confidence            35799999999999999999999987   79999987643

>3ef6_A Toluene 1,2-dioxygenase system ferredoxin--NAD(+) reductase; FAD binding protein, NADH binding protein, aromatic hydrocar catabolism, FAD; HET: FAD; 1.80A {Pseudomonas putida} PDB: 4emi_A* 4emj_A*

Probab=98.32  E-value=4.4e-07  Score=90.10  Aligned_cols=99  Identities=19%  Similarity=0.263  Sum_probs=76.7

Q ss_pred             CCCcEEEEcCcHHHHHHHHHHHHcCCCCCcEEEEcCCCCCCCCCCCCcccccCCCCCCCCCCCCCccccCCCCCCCCHhH
Q 012165           50 ENREFVIVGGGNAAGYAARTFVEHGMADGRLCIVSKEAYAPYERPALTKGYLFPLDKKPARLPGFHTCVGSGGERQTPEW  129 (469)
Q Consensus        50 ~~~~vvIIGgG~AGl~aA~~L~~~g~~~~~V~vie~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  129 (469)
                      ..++++|||+|+.|+.+|..|++.|.   +|++++..+.+.      .. .+ +     ..+           .....+.
T Consensus       142 ~~~~vvViGgG~~g~E~A~~l~~~g~---~Vtvv~~~~~~l------~~-~~-~-----~~~-----------~~~l~~~  194 (410)
T 3ef6_A          142 SATRLLIVGGGLIGCEVATTARKLGL---SVTILEAGDELL------VR-VL-G-----RRI-----------GAWLRGL  194 (410)
T ss_dssp             TTCEEEEECCSHHHHHHHHHHHHTTC---EEEEECSSSSSS------HH-HH-C-----HHH-----------HHHHHHH
T ss_pred             cCCeEEEECCCHHHHHHHHHHHhCCC---eEEEEecCCccc------hh-hc-C-----HHH-----------HHHHHHH
Confidence            35799999999999999999999886   899999876421      00 00 0     000           1123456


Q ss_pred             HHHCCcEEEeCCcEEEEeCCCc--EEEeCCCeEEEeccEEeccCCCCC
Q 012165          130 YKEKGIEMIYQDPVTSIDIEKQ--TLITNSGKLLKYGSLIVATGCTAS  175 (469)
Q Consensus       130 ~~~~~i~~~~~~~v~~id~~~~--~v~~~~g~~~~yd~lVlAtG~~~~  175 (469)
                      +++.|++++++++|.+++.+++  .|++.+|+++++|.||+|+|.+|.
T Consensus       195 l~~~GV~i~~~~~v~~i~~~~~~~~v~~~dg~~i~aD~Vv~a~G~~p~  242 (410)
T 3ef6_A          195 LTELGVQVELGTGVVGFSGEGQLEQVMASDGRSFVADSALICVGAEPA  242 (410)
T ss_dssp             HHHHTCEEECSCCEEEEECSSSCCEEEETTSCEEECSEEEECSCEEEC
T ss_pred             HHHCCCEEEeCCEEEEEeccCcEEEEEECCCCEEEcCEEEEeeCCeec
Confidence            7788999999999999987654  688999999999999999998875

>3kkj_A Amine oxidase, flavin-containing; oxidoreductase, PSR10, Q888A4, X-RAY, structure, PSI, protein structure initiative; HET: FAD; 2.50A {Pseudomonas syringae PV}

Probab=98.31  E-value=4.8e-07  Score=83.70  Aligned_cols=37  Identities=22%  Similarity=0.261  Sum_probs=33.4

Q ss_pred             CCCcEEEEcCcHHHHHHHHHHHHcCCCCCcEEEEcCCCCC
Q 012165           50 ENREFVIVGGGNAAGYAARTFVEHGMADGRLCIVSKEAYA   89 (469)
Q Consensus        50 ~~~~vvIIGgG~AGl~aA~~L~~~g~~~~~V~vie~~~~~   89 (469)
                      |.+||+|||||||||+||..|+++|+   +|+|+|+.+.+
T Consensus         1 Mt~dV~IIGaGpaGL~aA~~La~~G~---~V~v~Ek~~~~   37 (336)
T 3kkj_A            1 MTVPIAIIGTGIAGLSAAQALTAAGH---QVHLFDKSRGS   37 (336)
T ss_dssp             -CCCEEEECCSHHHHHHHHHHHHTTC---CEEEECSSSSS
T ss_pred             CCCCEEEECcCHHHHHHHHHHHHCCC---CEEEEECCCCC
Confidence            35799999999999999999999998   79999998765

>3c96_A Flavin-containing monooxygenase; FAD, oxidoreductase, PF01266, NESG, PAR240, structural genomics, PSI-2; HET: FAD; 1.90A {Pseudomonas aeruginosa PAO1} SCOP: c.3.1.2 d.16.1.2 PDB: 2rgj_A*

Probab=98.30  E-value=3.9e-07  Score=90.50  Aligned_cols=37  Identities=16%  Similarity=0.270  Sum_probs=32.9

Q ss_pred             CCCcEEEEcCcHHHHHHHHHHHHcCCCCCc-EEEEcCCCCC
Q 012165           50 ENREFVIVGGGNAAGYAARTFVEHGMADGR-LCIVSKEAYA   89 (469)
Q Consensus        50 ~~~~vvIIGgG~AGl~aA~~L~~~g~~~~~-V~vie~~~~~   89 (469)
                      ..+||+|||||++|+++|..|++.|.   + |+|+|+.+..
T Consensus         3 ~~~dVvIVGaG~aGl~~A~~L~~~G~---~~v~v~E~~~~~   40 (410)
T 3c96_A            3 EPIDILIAGAGIGGLSCALALHQAGI---GKVTLLESSSEI   40 (410)
T ss_dssp             -CCEEEEECCSHHHHHHHHHHHHTTC---SEEEEEESSSSC
T ss_pred             CCCeEEEECCCHHHHHHHHHHHhCCC---CeEEEEECCCCc
Confidence            45899999999999999999999987   8 9999998653

>3klj_A NAD(FAD)-dependent dehydrogenase, NIRB-family (N- domain); FAD-binding protein, GR-fold, oxidoreductase; HET: FAD; 2.10A {Clostridium acetobutylicum}

Probab=98.30  E-value=2.2e-06  Score=84.27  Aligned_cols=84  Identities=24%  Similarity=0.437  Sum_probs=70.4

Q ss_pred             cCCeEEEEcCChHHHHHHHHHHhCCCeEe------------------------------eeHHHHHHcCcEEEcCCeEEE
Q 012165          206 KAKKVVVVGGGYIGMEVAAAAVGWKLDTT------------------------------RYEQLYQQNGVKFVKGASIKN  255 (469)
Q Consensus       206 ~~~~vvVvG~G~~g~e~A~~l~~~g~~v~------------------------------~~~~~l~~~gV~~~~~~~v~~  255 (469)
                      ...+|+|||+|+.|+.+|..|...+.+++                              ...+.+++.||++++++++++
T Consensus         8 ~~~~~vIvGgG~AGl~aA~~L~~~~~~itlie~~~~~~y~~~~l~~~l~g~~~~~~l~~~~~~~~~~~~i~~~~~~~V~~   87 (385)
T 3klj_A            8 KSTKILILGAGPAGFSAAKAALGKCDDITMINSEKYLPYYRPRLNEIIAKNKSIDDILIKKNDWYEKNNIKVITSEFATS   87 (385)
T ss_dssp             CBCSEEEECCSHHHHHHHHHHTTTCSCEEEECSSSSCCBCGGGHHHHHHSCCCGGGTBSSCHHHHHHTTCEEECSCCEEE
T ss_pred             CCCCEEEEcCcHHHHHHHHHHhCCCCEEEEEECCCCCCcccChhhHHHcCCCCHHHccCCCHHHHHHCCCEEEeCCEEEE
Confidence            45689999999999999999977777776                              356778889999999999999


Q ss_pred             EEeCCCCcEEEEEcCCCCEEeCCEEEEccCCccCCchh
Q 012165          256 LEAGSDGRVAAVKLEDGSTIDADTIVIGIGAKPTVSPF  293 (469)
Q Consensus       256 i~~~~~~~v~~v~~~~g~~i~~D~vi~a~G~~p~~~~~  293 (469)
                      ++.. +.   .|++++|+++.+|.+|+|||.+|....+
T Consensus        88 id~~-~~---~v~~~~g~~~~yd~lvlAtG~~p~~p~i  121 (385)
T 3klj_A           88 IDPN-NK---LVTLKSGEKIKYEKLIIASGSIANKIKV  121 (385)
T ss_dssp             EETT-TT---EEEETTSCEEECSEEEECCCEEECCCCC
T ss_pred             EECC-CC---EEEECCCCEEECCEEEEecCCCcCCCCC
Confidence            9853 22   4788999999999999999998875433

>2hqm_A GR, grase, glutathione reductase; glutathione reductase complexed with FAD, oxidoreductase; HET: NAG FAD GSH; 2.40A {Saccharomyces cerevisiae}

Probab=98.30  E-value=9.5e-07  Score=89.55  Aligned_cols=99  Identities=15%  Similarity=0.221  Sum_probs=75.9

Q ss_pred             CCCcEEEEcCcHHHHHHHHHHHHcCCCCCcEEEEcCCCCCCCCCCCCcccccCCCCCCCCCCCCCccccCCCCCCCCHhH
Q 012165           50 ENREFVIVGGGNAAGYAARTFVEHGMADGRLCIVSKEAYAPYERPALTKGYLFPLDKKPARLPGFHTCVGSGGERQTPEW  129 (469)
Q Consensus        50 ~~~~vvIIGgG~AGl~aA~~L~~~g~~~~~V~vie~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  129 (469)
                      ..++++|||||+.|+.+|..|++.|.   +|++++..+...   +.+..           .+           .....+.
T Consensus       184 ~~~~vvViGgG~ig~E~A~~l~~~g~---~Vtlv~~~~~~l---~~~d~-----------~~-----------~~~l~~~  235 (479)
T 2hqm_A          184 QPKKVVVVGAGYIGIELAGVFHGLGS---ETHLVIRGETVL---RKFDE-----------CI-----------QNTITDH  235 (479)
T ss_dssp             CCSEEEEECSSHHHHHHHHHHHHTTC---EEEEECSSSSSC---TTSCH-----------HH-----------HHHHHHH
T ss_pred             cCCeEEEECCCHHHHHHHHHHHHcCC---ceEEEEeCCccc---cccCH-----------HH-----------HHHHHHH
Confidence            45799999999999999999999986   899999876421   10100           00           1123456


Q ss_pred             HHHCCcEEEeCCcEEEEeCCC----cEEEeCCC-eEEEeccEEeccCCCCCc
Q 012165          130 YKEKGIEMIYQDPVTSIDIEK----QTLITNSG-KLLKYGSLIVATGCTASR  176 (469)
Q Consensus       130 ~~~~~i~~~~~~~v~~id~~~----~~v~~~~g-~~~~yd~lVlAtG~~~~~  176 (469)
                      +++.|++++.+++|.+++.++    ..|++.+| +++++|.||+|+|.+|..
T Consensus       236 l~~~Gv~i~~~~~v~~i~~~~~~~~~~v~~~~G~~~i~~D~vv~a~G~~p~~  287 (479)
T 2hqm_A          236 YVKEGINVHKLSKIVKVEKNVETDKLKIHMNDSKSIDDVDELIWTIGRKSHL  287 (479)
T ss_dssp             HHHHTCEEECSCCEEEEEECC-CCCEEEEETTSCEEEEESEEEECSCEEECC
T ss_pred             HHhCCeEEEeCCEEEEEEEcCCCcEEEEEECCCcEEEEcCEEEECCCCCCcc
Confidence            788899999999999997642    36788888 789999999999988763

>2oln_A NIKD protein; flavoprotein, rossmann fold, oxidoreductase; HET: FAD; 1.15A {Streptomyces tendae} PDB: 2olo_A* 3hzl_A* 2q6u_A*

Probab=98.30  E-value=2.2e-06  Score=84.58  Aligned_cols=35  Identities=26%  Similarity=0.522  Sum_probs=32.1

Q ss_pred             CCcEEEEcCcHHHHHHHHHHHHcCCCCCcEEEEcCCCC
Q 012165           51 NREFVIVGGGNAAGYAARTFVEHGMADGRLCIVSKEAY   88 (469)
Q Consensus        51 ~~~vvIIGgG~AGl~aA~~L~~~g~~~~~V~vie~~~~   88 (469)
                      ++||+|||||++|+++|..|+++|.   +|+|+|+.+.
T Consensus         4 ~~DVvIIGaG~~Gl~~A~~La~~G~---~V~vlE~~~~   38 (397)
T 2oln_A            4 SYDVVVVGGGPVGLATAWQVAERGH---RVLVLERHTF   38 (397)
T ss_dssp             EEEEEEECCSHHHHHHHHHHHHTTC---CEEEEESSCT
T ss_pred             cCCEEEECCCHHHHHHHHHHHHCCC---eEEEEeCCCC
Confidence            4799999999999999999999987   7999999764

>3fg2_P Putative rubredoxin reductase; ferredoxin reductase, RPA3782, F flavoprotein, oxidoreductase; HET: FAD; 2.20A {Rhodopseudomonas palustris}

Probab=98.29  E-value=1e-06  Score=87.22  Aligned_cols=98  Identities=19%  Similarity=0.258  Sum_probs=75.4

Q ss_pred             CCcEEEEcCcHHHHHHHHHHHHcCCCCCcEEEEcCCCCCCCCCCCCcccccCCCCCCCCCCCCCccccCCCCCCCCHhHH
Q 012165           51 NREFVIVGGGNAAGYAARTFVEHGMADGRLCIVSKEAYAPYERPALTKGYLFPLDKKPARLPGFHTCVGSGGERQTPEWY  130 (469)
Q Consensus        51 ~~~vvIIGgG~AGl~aA~~L~~~g~~~~~V~vie~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  130 (469)
                      .++++|||+|+.|+.+|..|++.|.   +|++++..+.+.-.  .+.           ..+           .....+.+
T Consensus       142 ~~~vvViGgG~~g~e~A~~l~~~g~---~Vtvv~~~~~~~~~--~~~-----------~~~-----------~~~l~~~l  194 (404)
T 3fg2_P          142 KKHVVVIGAGFIGLEFAATARAKGL---EVDVVELAPRVMAR--VVT-----------PEI-----------SSYFHDRH  194 (404)
T ss_dssp             CSEEEEECCSHHHHHHHHHHHHTTC---EEEEECSSSSTTTT--TSC-----------HHH-----------HHHHHHHH
T ss_pred             CCeEEEECCCHHHHHHHHHHHhCCC---EEEEEeCCCcchhh--ccC-----------HHH-----------HHHHHHHH
Confidence            5789999999999999999999986   89999987643100  000           000           11234567


Q ss_pred             HHCCcEEEeCCcEEEEeCCCc---EEEeCCCeEEEeccEEeccCCCCC
Q 012165          131 KEKGIEMIYQDPVTSIDIEKQ---TLITNSGKLLKYGSLIVATGCTAS  175 (469)
Q Consensus       131 ~~~~i~~~~~~~v~~id~~~~---~v~~~~g~~~~yd~lVlAtG~~~~  175 (469)
                      ++.|++++.+++|.++..++.   .|.+.+|+++++|.+|+|+|.+|.
T Consensus       195 ~~~GV~i~~~~~v~~i~~~~~~v~~V~~~dG~~i~aD~Vv~a~G~~p~  242 (404)
T 3fg2_P          195 SGAGIRMHYGVRATEIAAEGDRVTGVVLSDGNTLPCDLVVVGVGVIPN  242 (404)
T ss_dssp             HHTTCEEECSCCEEEEEEETTEEEEEEETTSCEEECSEEEECCCEEEC
T ss_pred             HhCCcEEEECCEEEEEEecCCcEEEEEeCCCCEEEcCEEEECcCCccC
Confidence            889999999999999987543   578899999999999999998875

>4hb9_A Similarities with probable monooxygenase; flavin, structural genomics, NEW YORK structural genomics RE consortium, nysgrc, PSI; HET: MSE FAD; 1.93A {Photorhabdus luminescens}

Probab=98.29  E-value=3.5e-06  Score=83.22  Aligned_cols=34  Identities=24%  Similarity=0.429  Sum_probs=31.5

Q ss_pred             cEEEEcCcHHHHHHHHHHHHcCCCCCcEEEEcCCCCC
Q 012165           53 EFVIVGGGNAAGYAARTFVEHGMADGRLCIVSKEAYA   89 (469)
Q Consensus        53 ~vvIIGgG~AGl~aA~~L~~~g~~~~~V~vie~~~~~   89 (469)
                      +|+|||||++|+++|..|+++|+   +|+|+|+.+.+
T Consensus         3 ~V~IVGaGpaGl~~A~~L~~~G~---~v~v~Er~~~~   36 (412)
T 4hb9_A            3 HVGIIGAGIGGTCLAHGLRKHGI---KVTIYERNSAA   36 (412)
T ss_dssp             EEEEECCSHHHHHHHHHHHHTTC---EEEEECSSCSS
T ss_pred             EEEEECcCHHHHHHHHHHHhCCC---CEEEEecCCCC
Confidence            79999999999999999999998   79999997754

>2pyx_A Tryptophan halogenase; structural genomics, JOI for structural genomics, JCSG, protein structure initiative biosynthetic protein; HET: MSE TLA PG4; 1.50A {Shewanella frigidimarina}

Probab=98.29  E-value=2.5e-06  Score=87.53  Aligned_cols=53  Identities=15%  Similarity=0.273  Sum_probs=43.2

Q ss_pred             eHHHHHH-cCcEEEcCCeEEEEEeCCCCcEEEEEcCCCCEEeCCEEEEccCCccC
Q 012165          236 YEQLYQQ-NGVKFVKGASIKNLEAGSDGRVAAVKLEDGSTIDADTIVIGIGAKPT  289 (469)
Q Consensus       236 ~~~~l~~-~gV~~~~~~~v~~i~~~~~~~v~~v~~~~g~~i~~D~vi~a~G~~p~  289 (469)
                      +.+.+++ .|++++.+ +|++++.++++.+..|.+++|+++.+|+||.|.|....
T Consensus       181 L~~~a~~~~Gv~i~~~-~v~~i~~~~~g~~~~v~~~~g~~i~ad~vV~AdG~~S~  234 (526)
T 2pyx_A          181 LTEHCTQKLGVTHIRD-HVSQIINNQHGDIEKLITKQNGEISGQLFIDCTGAKSL  234 (526)
T ss_dssp             HHHHHHHTSCCEEEEC-CEEEEEECTTSCEEEEEESSSCEEECSEEEECSGGGCC
T ss_pred             HHHHHHhcCCCEEEEe-EEEEEEecCCCcEEEEEECCCCEEEcCEEEECCCcchH
Confidence            3455666 89999999 69999876566666788888888999999999999765

>3ics_A Coenzyme A-disulfide reductase; pyridine nucleotide-disulfide oxidoreductase class I, rhodan coenzyme A, flavin adenine dinucleotide; HET: FAD COA ADP; 1.94A {Bacillus anthracis} PDB: 3icr_A* 3ict_A*

Probab=98.29  E-value=1e-06  Score=91.79  Aligned_cols=97  Identities=20%  Similarity=0.376  Sum_probs=76.9

Q ss_pred             CCcEEEEcCcHHHHHHHHHHHHcCCCCCcEEEEcCCCCCCCCCCCCcccccCCCCCCCCCCCCCccccCCCCCCCCHhHH
Q 012165           51 NREFVIVGGGNAAGYAARTFVEHGMADGRLCIVSKEAYAPYERPALTKGYLFPLDKKPARLPGFHTCVGSGGERQTPEWY  130 (469)
Q Consensus        51 ~~~vvIIGgG~AGl~aA~~L~~~g~~~~~V~vie~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  130 (469)
                      .++++|||||+.|+.+|..|++.|.   +|++++..+...   +.+..           .+           .....+.+
T Consensus       187 ~~~vvViGgG~~g~e~A~~l~~~g~---~Vtlv~~~~~~l---~~~~~-----------~~-----------~~~l~~~l  238 (588)
T 3ics_A          187 PRHATVIGGGFIGVEMVENLRERGI---EVTLVEMANQVM---PPIDY-----------EM-----------AAYVHEHM  238 (588)
T ss_dssp             CSEEEEECCSHHHHHHHHHHHHTTC---EEEEECSSSSSC---TTSCH-----------HH-----------HHHHHHHH
T ss_pred             CCeEEEECCCHHHHHHHHHHHhCCC---eEEEEecCCccc---ccCCH-----------HH-----------HHHHHHHH
Confidence            5789999999999999999999986   899998765421   10100           00           11245667


Q ss_pred             HHCCcEEEeCCcEEEEeCCCcEEEeCCCeEEEeccEEeccCCCCC
Q 012165          131 KEKGIEMIYQDPVTSIDIEKQTLITNSGKLLKYGSLIVATGCTAS  175 (469)
Q Consensus       131 ~~~~i~~~~~~~v~~id~~~~~v~~~~g~~~~yd~lVlAtG~~~~  175 (469)
                      ++.|++++.+++|..++.+...|++.+|+++++|.||+|+|.+|.
T Consensus       239 ~~~GV~i~~~~~v~~i~~~~~~v~~~~g~~i~~D~Vi~a~G~~p~  283 (588)
T 3ics_A          239 KNHDVELVFEDGVDALEENGAVVRLKSGSVIQTDMLILAIGVQPE  283 (588)
T ss_dssp             HHTTCEEECSCCEEEEEGGGTEEEETTSCEEECSEEEECSCEEEC
T ss_pred             HHcCCEEEECCeEEEEecCCCEEEECCCCEEEcCEEEEccCCCCC
Confidence            889999999999999988767899999999999999999998765

>1ebd_A E3BD, dihydrolipoamide dehydrogenase; redox-active center, glycolysis, oxidoreductase; HET: FAD; 2.60A {Geobacillus stearothermophilus} SCOP: c.3.1.5 c.3.1.5 d.87.1.1

Probab=98.28  E-value=6.4e-07  Score=90.20  Aligned_cols=98  Identities=15%  Similarity=0.291  Sum_probs=72.8

Q ss_pred             CCCcEEEEcCcHHHHHHHHHHHHcCCCCCcEEEEcCCCCCCCCCCCCcccccCCCCCCCCCCCCCccccCCCCCCCCHhH
Q 012165           50 ENREFVIVGGGNAAGYAARTFVEHGMADGRLCIVSKEAYAPYERPALTKGYLFPLDKKPARLPGFHTCVGSGGERQTPEW  129 (469)
Q Consensus        50 ~~~~vvIIGgG~AGl~aA~~L~~~g~~~~~V~vie~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  129 (469)
                      ..++++|||||+.|+.+|..|++.|.   +|+++++.+.+.   |.+..           .+           .....+.
T Consensus       169 ~~~~vvViGgG~~g~e~A~~l~~~g~---~Vtlv~~~~~~l---~~~~~-----------~~-----------~~~l~~~  220 (455)
T 1ebd_A          169 VPKSLVVIGGGYIGIELGTAYANFGT---KVTILEGAGEIL---SGFEK-----------QM-----------AAIIKKR  220 (455)
T ss_dssp             CCSEEEEECCSHHHHHHHHHHHHTTC---EEEEEESSSSSS---TTSCH-----------HH-----------HHHHHHH
T ss_pred             CCCeEEEECCCHHHHHHHHHHHHcCC---cEEEEEcCCccc---cccCH-----------HH-----------HHHHHHH
Confidence            35799999999999999999999986   899999875421   00000           00           1123456


Q ss_pred             HHHCCcEEEeCCcEEEEeCCCc--EEEeC---CCeEEEeccEEeccCCCCC
Q 012165          130 YKEKGIEMIYQDPVTSIDIEKQ--TLITN---SGKLLKYGSLIVATGCTAS  175 (469)
Q Consensus       130 ~~~~~i~~~~~~~v~~id~~~~--~v~~~---~g~~~~yd~lVlAtG~~~~  175 (469)
                      +++.|++++.+++|.+++.++.  .+++.   +++++++|.+|+|+|.+|.
T Consensus       221 l~~~gv~i~~~~~v~~i~~~~~~~~v~~~~~g~~~~~~~D~vv~a~G~~p~  271 (455)
T 1ebd_A          221 LKKKGVEVVTNALAKGAEEREDGVTVTYEANGETKTIDADYVLVTVGRRPN  271 (455)
T ss_dssp             HHHTTCEEEESEEEEEEEEETTEEEEEEEETTEEEEEEESEEEECSCEEES
T ss_pred             HHHCCCEEEeCCEEEEEEEeCCeEEEEEEeCCceeEEEcCEEEECcCCCcc
Confidence            7889999999999999986553  34443   4567999999999998876

>2wpf_A Trypanothione reductase; oxidoreductase, trypanosomiasis, sleeping sickness, flavoPro redox-active center; HET: FAD WPF; 1.90A {Trypanosoma brucei} PDB: 2wov_A* 2wow_A* 2wp5_A* 2wp6_A* 2wpc_A* 2wpe_A* 2woi_A* 2wba_A* 1nda_A* 1gxf_A* 1bzl_A* 1aog_A*

Probab=98.28  E-value=1.1e-06  Score=89.55  Aligned_cols=98  Identities=17%  Similarity=0.301  Sum_probs=75.9

Q ss_pred             CCCcEEEEcCcHHHHHHHHHHHHc---CCCCCcEEEEcCCCCCCCCCCCCcccccCCCCCCCCCCCCCccccCCCCCCCC
Q 012165           50 ENREFVIVGGGNAAGYAARTFVEH---GMADGRLCIVSKEAYAPYERPALTKGYLFPLDKKPARLPGFHTCVGSGGERQT  126 (469)
Q Consensus        50 ~~~~vvIIGgG~AGl~aA~~L~~~---g~~~~~V~vie~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  126 (469)
                      ..++++|||||+.|+.+|..|++.   |.   +|++++..+...   +.+..           .+           ....
T Consensus       190 ~~~~vvViGgG~ig~E~A~~l~~~~~~g~---~Vtlv~~~~~~l---~~~d~-----------~~-----------~~~l  241 (495)
T 2wpf_A          190 PPRRVLTVGGGFISVEFAGIFNAYKPPGG---KVTLCYRNNLIL---RGFDE-----------TI-----------REEV  241 (495)
T ss_dssp             CCSEEEEECSSHHHHHHHHHHHHHCCTTC---EEEEEESSSSSC---TTSCH-----------HH-----------HHHH
T ss_pred             cCCeEEEECCCHHHHHHHHHHHhhCCCCC---eEEEEEcCCccc---cccCH-----------HH-----------HHHH
Confidence            357999999999999999999998   75   899999876421   10100           00           1124


Q ss_pred             HhHHHHCCcEEEeCCcEEEEeCCC---cEEEeCCCeEEEeccEEeccCCCCC
Q 012165          127 PEWYKEKGIEMIYQDPVTSIDIEK---QTLITNSGKLLKYGSLIVATGCTAS  175 (469)
Q Consensus       127 ~~~~~~~~i~~~~~~~v~~id~~~---~~v~~~~g~~~~yd~lVlAtG~~~~  175 (469)
                      .+.+++.||+++++++|.+++.++   ..|++.+|+++++|.||+|+|.+|.
T Consensus       242 ~~~l~~~GV~i~~~~~v~~i~~~~~~~~~v~~~~G~~i~~D~vv~a~G~~p~  293 (495)
T 2wpf_A          242 TKQLTANGIEIMTNENPAKVSLNTDGSKHVTFESGKTLDVDVVMMAIGRIPR  293 (495)
T ss_dssp             HHHHHHTTCEEEESCCEEEEEECTTSCEEEEETTSCEEEESEEEECSCEEEC
T ss_pred             HHHHHhCCCEEEeCCEEEEEEEcCCceEEEEECCCcEEEcCEEEECCCCccc
Confidence            566788999999999999998653   3688889988999999999998876

>1fec_A Trypanothione reductase; redox-active center, oxidoreductase, flavoprotein, FAD, NADP; HET: FAD; 1.70A {Crithidia fasciculata} SCOP: c.3.1.5 c.3.1.5 d.87.1.1 PDB: 1fea_A* 1feb_A* 2tpr_A* 1tyt_A* 1typ_A* 2jk6_A* 2w0h_A* 2yau_A* 2x50_A* 2ve2_A*

Probab=98.26  E-value=1.2e-06  Score=89.11  Aligned_cols=99  Identities=17%  Similarity=0.255  Sum_probs=76.3

Q ss_pred             CCCcEEEEcCcHHHHHHHHHHHHc---CCCCCcEEEEcCCCCCCCCCCCCcccccCCCCCCCCCCCCCccccCCCCCCCC
Q 012165           50 ENREFVIVGGGNAAGYAARTFVEH---GMADGRLCIVSKEAYAPYERPALTKGYLFPLDKKPARLPGFHTCVGSGGERQT  126 (469)
Q Consensus        50 ~~~~vvIIGgG~AGl~aA~~L~~~---g~~~~~V~vie~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  126 (469)
                      ..++++|||||+.|+.+|..|++.   |.   +|+++++.+...   +.+..           .+           ....
T Consensus       186 ~~~~vvViGgG~ig~E~A~~l~~~~~~g~---~Vtlv~~~~~~l---~~~d~-----------~~-----------~~~l  237 (490)
T 1fec_A          186 APKRALCVGGGYISIEFAGIFNAYKARGG---QVDLAYRGDMIL---RGFDS-----------EL-----------RKQL  237 (490)
T ss_dssp             CCSEEEEECSSHHHHHHHHHHHHHSCTTC---EEEEEESSSSSS---TTSCH-----------HH-----------HHHH
T ss_pred             cCCeEEEECCCHHHHHHHHHHHhhccCcC---eEEEEEcCCCcc---cccCH-----------HH-----------HHHH
Confidence            357999999999999999999998   75   899999876421   11100           00           1124


Q ss_pred             HhHHHHCCcEEEeCCcEEEEeCCC---cEEEeCCCeEEEeccEEeccCCCCCc
Q 012165          127 PEWYKEKGIEMIYQDPVTSIDIEK---QTLITNSGKLLKYGSLIVATGCTASR  176 (469)
Q Consensus       127 ~~~~~~~~i~~~~~~~v~~id~~~---~~v~~~~g~~~~yd~lVlAtG~~~~~  176 (469)
                      .+.+++.|++++.+++|.+++.++   ..|++.+|+++++|.||+|+|.+|..
T Consensus       238 ~~~l~~~GV~i~~~~~v~~i~~~~~~~~~v~~~~G~~i~~D~vv~a~G~~p~~  290 (490)
T 1fec_A          238 TEQLRANGINVRTHENPAKVTKNADGTRHVVFESGAEADYDVVMLAIGRVPRS  290 (490)
T ss_dssp             HHHHHHTTEEEEETCCEEEEEECTTSCEEEEETTSCEEEESEEEECSCEEESC
T ss_pred             HHHHHhCCCEEEeCCEEEEEEEcCCCEEEEEECCCcEEEcCEEEEccCCCcCc
Confidence            566788999999999999998653   36788888889999999999988763

>1q1r_A Putidaredoxin reductase; glutathione reductase fold, oxidoreductase; HET: FAD; 1.91A {Pseudomonas putida} SCOP: c.3.1.5 c.3.1.5 d.87.1.1 PDB: 1q1w_A* 3lb8_A*

Probab=98.25  E-value=1.5e-06  Score=86.78  Aligned_cols=99  Identities=15%  Similarity=0.294  Sum_probs=74.7

Q ss_pred             CCCcEEEEcCcHHHHHHHHHHHHcCCCCCcEEEEcCCCCCCCCCCCCcccccCCCCCCCCCCCCCccccCCCCCCCCHhH
Q 012165           50 ENREFVIVGGGNAAGYAARTFVEHGMADGRLCIVSKEAYAPYERPALTKGYLFPLDKKPARLPGFHTCVGSGGERQTPEW  129 (469)
Q Consensus        50 ~~~~vvIIGgG~AGl~aA~~L~~~g~~~~~V~vie~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  129 (469)
                      ..++++|||||+.|+.+|..|++.|.   +|++++..+...      .. .+      ...+           .....+.
T Consensus       148 ~~~~vvViGgG~~g~E~A~~l~~~G~---~Vtlv~~~~~~l------~~-~~------~~~~-----------~~~l~~~  200 (431)
T 1q1r_A          148 ADNRLVVIGGGYIGLEVAATAIKANM---HVTLLDTAARVL------ER-VT------APPV-----------SAFYEHL  200 (431)
T ss_dssp             TTCEEEEECCSHHHHHHHHHHHHTTC---EEEEECSSSSTT------TT-TS------CHHH-----------HHHHHHH
T ss_pred             cCCeEEEECCCHHHHHHHHHHHhCCC---EEEEEEeCCccc------cc-hh------hHHH-----------HHHHHHH
Confidence            35799999999999999999999986   799999865421      00 00      0000           0123456


Q ss_pred             HHHCCcEEEeCCcEEEEeC--C-Cc--EEEeCCCeEEEeccEEeccCCCCC
Q 012165          130 YKEKGIEMIYQDPVTSIDI--E-KQ--TLITNSGKLLKYGSLIVATGCTAS  175 (469)
Q Consensus       130 ~~~~~i~~~~~~~v~~id~--~-~~--~v~~~~g~~~~yd~lVlAtG~~~~  175 (469)
                      +++.|++++.++++.+++.  + ++  .|.+.+|+++.+|.||+|+|.+|.
T Consensus       201 l~~~GV~i~~~~~v~~i~~~~~~~~v~~v~~~~G~~i~~D~Vv~a~G~~p~  251 (431)
T 1q1r_A          201 HREAGVDIRTGTQVCGFEMSTDQQKVTAVLCEDGTRLPADLVIAGIGLIPN  251 (431)
T ss_dssp             HHHHTCEEECSCCEEEEEECTTTCCEEEEEETTSCEEECSEEEECCCEEEC
T ss_pred             HHhCCeEEEeCCEEEEEEeccCCCcEEEEEeCCCCEEEcCEEEECCCCCcC
Confidence            7788999999999999986  3 33  578889989999999999998765

>1mo9_A ORF3; nucleotide binding motifs, nucleotide binding domain, oxidor; HET: FAD KPC; 1.65A {Xanthobacter autotrophicus} SCOP: c.3.1.5 c.3.1.5 d.87.1.1 PDB: 1mok_A* 2c3c_A* 2c3d_A* 3q6j_A*

Probab=98.25  E-value=1.4e-06  Score=89.29  Aligned_cols=97  Identities=20%  Similarity=0.237  Sum_probs=74.8

Q ss_pred             CcEEEEcCcHHHHHHHHHHHHcCCCCCcEEEEcCCCCCCCCCCCCcccccCCCCCCCCCCCCCccccCCCCCCCCHhHHH
Q 012165           52 REFVIVGGGNAAGYAARTFVEHGMADGRLCIVSKEAYAPYERPALTKGYLFPLDKKPARLPGFHTCVGSGGERQTPEWYK  131 (469)
Q Consensus        52 ~~vvIIGgG~AGl~aA~~L~~~g~~~~~V~vie~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  131 (469)
                      ++++|||||+.|+.+|..|++.|.   +|++++..+...   +.+..           .+           .....+.++
T Consensus       215 ~~vvViGgG~~g~E~A~~l~~~G~---~Vtlv~~~~~~l---~~~~~-----------~~-----------~~~l~~~l~  266 (523)
T 1mo9_A          215 STVVVVGGSKTAVEYGCFFNATGR---RTVMLVRTEPLK---LIKDN-----------ET-----------RAYVLDRMK  266 (523)
T ss_dssp             SEEEEECCSHHHHHHHHHHHHTTC---EEEEECSSCTTT---TCCSH-----------HH-----------HHHHHHHHH
T ss_pred             CeEEEECCCHHHHHHHHHHHHcCC---eEEEEEecCccc---ccccH-----------HH-----------HHHHHHHHH
Confidence            799999999999999999999986   899999876421   00000           00           112456678


Q ss_pred             HCCcEEEeCCcEEEEeC--CC----cEEEeCCCe-EEEeccEEeccCCCCCc
Q 012165          132 EKGIEMIYQDPVTSIDI--EK----QTLITNSGK-LLKYGSLIVATGCTASR  176 (469)
Q Consensus       132 ~~~i~~~~~~~v~~id~--~~----~~v~~~~g~-~~~yd~lVlAtG~~~~~  176 (469)
                      +.|++++.+++|.+++.  +.    ..|++.+|+ ++++|.||+|+|.+|..
T Consensus       267 ~~GV~i~~~~~V~~i~~~~~~~v~~~~v~~~~G~~~i~aD~Vv~A~G~~p~~  318 (523)
T 1mo9_A          267 EQGMEIISGSNVTRIEEDANGRVQAVVAMTPNGEMRIETDFVFLGLGEQPRS  318 (523)
T ss_dssp             HTTCEEESSCEEEEEEECTTSBEEEEEEEETTEEEEEECSCEEECCCCEECC
T ss_pred             hCCcEEEECCEEEEEEEcCCCceEEEEEEECCCcEEEEcCEEEECcCCccCC
Confidence            89999999999999986  33    357788887 89999999999988763

>2aqj_A Tryptophan halogenase, pRNA; flavin-dependent halogenase, helical bundle, sandwiched sheets, structural genomics; HET: TRP FAD; 1.80A {Pseudomonas fluorescens} PDB: 2apg_A* 2ar8_A* 2ard_A* 2jkc_A*

Probab=98.25  E-value=7.5e-07  Score=91.73  Aligned_cols=45  Identities=20%  Similarity=0.386  Sum_probs=35.9

Q ss_pred             HHHCCcEEEeCCcEEEEeCCC--c--EEEeCCCeEEEeccEEeccCCCCC
Q 012165          130 YKEKGIEMIYQDPVTSIDIEK--Q--TLITNSGKLLKYGSLIVATGCTAS  175 (469)
Q Consensus       130 ~~~~~i~~~~~~~v~~id~~~--~--~v~~~~g~~~~yd~lVlAtG~~~~  175 (469)
                      +.+.|++++.+ +|+.++.+.  .  .|++.+|+++.+|.||.|+|....
T Consensus       175 a~~~gv~~~~~-~v~~i~~~~~g~~~~v~~~~g~~i~ad~vV~A~G~~s~  223 (538)
T 2aqj_A          175 AVERGVNRVVD-EVVDVRLNNRGYISNLLTKEGRTLEADLFIDCSGMRGL  223 (538)
T ss_dssp             HHHTTCEEEEC-CEEEEEECTTSCEEEEEETTSCEECCSEEEECCGGGCC
T ss_pred             HHHCCCEEEEe-eEeEEEEcCCCcEEEEEECCCcEEEeCEEEECCCCchh
Confidence            34579999998 899997642  2  577888888999999999997654

>4b1b_A TRXR, thioredoxin reductase; oxidoreductase, FAD, NADPH, thiol-mediated redox metabolism, pyridine nucleotide-disulfide oxidoreductase; HET: FAD; 2.90A {Plasmodium falciparum}

Probab=98.25  E-value=1.8e-06  Score=88.43  Aligned_cols=98  Identities=10%  Similarity=0.112  Sum_probs=74.9

Q ss_pred             CCCCcEEEEcCcHHHHHHHHHHHHcCCCCCcEEEEcCCCCCCCCCCCCcccccCCCCCCCCCCCCCccccCCCCCCCCHh
Q 012165           49 NENREFVIVGGGNAAGYAARTFVEHGMADGRLCIVSKEAYAPYERPALTKGYLFPLDKKPARLPGFHTCVGSGGERQTPE  128 (469)
Q Consensus        49 ~~~~~vvIIGgG~AGl~aA~~L~~~g~~~~~V~vie~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  128 (469)
                      ..+++++|||||+-|+..|..+++.|.   +|||+++...++.    .        +..   +           ......
T Consensus       221 ~lP~~lvIIGgG~IGlE~A~~~~~lG~---~VTii~~~~~L~~----~--------D~e---i-----------~~~l~~  271 (542)
T 4b1b_A          221 KDPGKTLVVGASYVALECSGFLNSLGY---DVTVAVRSIVLRG----F--------DQQ---C-----------AVKVKL  271 (542)
T ss_dssp             SCCCSEEEECCSHHHHHHHHHHHHHTC---CEEEEESSCSSTT----S--------CHH---H-----------HHHHHH
T ss_pred             cCCceEEEECCCHHHHHHHHHHHhcCC---eEEEecccccccc----c--------chh---H-----------HHHHHH
Confidence            345799999999999999999999987   7999976433211    0        000   0           123456


Q ss_pred             HHHHCCcEEEeCCcEEEEeCCCc--EEEeCCCeEEEeccEEeccCCCCC
Q 012165          129 WYKEKGIEMIYQDPVTSIDIEKQ--TLITNSGKLLKYGSLIVATGCTAS  175 (469)
Q Consensus       129 ~~~~~~i~~~~~~~v~~id~~~~--~v~~~~g~~~~yd~lVlAtG~~~~  175 (469)
                      .+++.++.++++..+..+...+.  .|.+.++.++.+|.|++|+|-+|+
T Consensus       272 ~l~~~gi~~~~~~~v~~~~~~~~~~~v~~~~~~~~~~D~vLvAvGR~Pn  320 (542)
T 4b1b_A          272 YMEEQGVMFKNGILPKKLTKMDDKILVEFSDKTSELYDTVLYAIGRKGD  320 (542)
T ss_dssp             HHHHTTCEEEETCCEEEEEEETTEEEEEETTSCEEEESEEEECSCEEES
T ss_pred             HHHhhcceeecceEEEEEEecCCeEEEEEcCCCeEEEEEEEEcccccCC
Confidence            78899999999999998877654  456778888999999999998775

>1ojt_A Surface protein; redox-active center, glycolysis, oxidoreductase, NAD, flavop FAD, P64K; HET: FAD; 2.75A {Neisseria meningitidis} SCOP: c.3.1.5 c.3.1.5 d.87.1.1 PDB: 1bhy_A*

Probab=98.24  E-value=8.1e-07  Score=90.15  Aligned_cols=99  Identities=13%  Similarity=0.174  Sum_probs=74.5

Q ss_pred             CCCcEEEEcCcHHHHHHHHHHHHcCCCCCcEEEEcCCCCCCCCCCCCcccccCCCCCCCCCCCCCccccCCCCCCCCHhH
Q 012165           50 ENREFVIVGGGNAAGYAARTFVEHGMADGRLCIVSKEAYAPYERPALTKGYLFPLDKKPARLPGFHTCVGSGGERQTPEW  129 (469)
Q Consensus        50 ~~~~vvIIGgG~AGl~aA~~L~~~g~~~~~V~vie~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  129 (469)
                      ..++++|||||+.|+.+|..|++.|.   +|+|++..+...   +.+..           .+           .....+.
T Consensus       184 ~~~~vvViGgG~ig~E~A~~l~~~G~---~Vtlv~~~~~~l---~~~~~-----------~~-----------~~~l~~~  235 (482)
T 1ojt_A          184 VPGKLLIIGGGIIGLEMGTVYSTLGS---RLDVVEMMDGLM---QGADR-----------DL-----------VKVWQKQ  235 (482)
T ss_dssp             CCSEEEEESCSHHHHHHHHHHHHHTC---EEEEECSSSSSS---TTSCH-----------HH-----------HHHHHHH
T ss_pred             cCCeEEEECCCHHHHHHHHHHHHcCC---eEEEEEECCccc---cccCH-----------HH-----------HHHHHHH
Confidence            35799999999999999999999986   899999876421   00000           00           1123456


Q ss_pred             HHHCCcEEEeCCcEEEEeCCCc--EEEeCC----CeEEEeccEEeccCCCCCc
Q 012165          130 YKEKGIEMIYQDPVTSIDIEKQ--TLITNS----GKLLKYGSLIVATGCTASR  176 (469)
Q Consensus       130 ~~~~~i~~~~~~~v~~id~~~~--~v~~~~----g~~~~yd~lVlAtG~~~~~  176 (469)
                      +++.||+++.+++|.+++.++.  .+++.+    |+++.+|.||+|+|.+|..
T Consensus       236 l~~~gV~i~~~~~v~~i~~~~~~~~v~~~~~~~~g~~~~~D~vv~a~G~~p~~  288 (482)
T 1ojt_A          236 NEYRFDNIMVNTKTVAVEPKEDGVYVTFEGANAPKEPQRYDAVLVAAGRAPNG  288 (482)
T ss_dssp             HGGGEEEEECSCEEEEEEEETTEEEEEEESSSCCSSCEEESCEEECCCEEECG
T ss_pred             HHhcCCEEEECCEEEEEEEcCCeEEEEEeccCCCceEEEcCEEEECcCCCcCC
Confidence            7788999999999999976543  566666    6779999999999988763

>2weu_A Tryptophan 5-halogenase; regioselectivity, antifungal protei; HET: TRP; 1.70A {Streptomyces rugosporus} PDB: 2wet_A* 2wes_A*

Probab=98.23  E-value=3e-06  Score=86.62  Aligned_cols=53  Identities=17%  Similarity=0.274  Sum_probs=44.3

Q ss_pred             eHHHHHHcCcEEEcCCeEEEEEeCCCCcEEEEEcCCCCEEeCCEEEEccCCccC
Q 012165          236 YEQLYQQNGVKFVKGASIKNLEAGSDGRVAAVKLEDGSTIDADTIVIGIGAKPT  289 (469)
Q Consensus       236 ~~~~l~~~gV~~~~~~~v~~i~~~~~~~v~~v~~~~g~~i~~D~vi~a~G~~p~  289 (469)
                      +.+.+++.|++++.+ +|++++.++++.+..|.+.+|+++.+|.||.|.|....
T Consensus       179 L~~~a~~~gv~~~~~-~v~~i~~~~~~~~~~v~~~~g~~~~ad~vV~A~G~~S~  231 (511)
T 2weu_A          179 LSEYAIARGVRHVVD-DVQHVGQDERGWISGVHTKQHGEISGDLFVDCTGFRGL  231 (511)
T ss_dssp             HHHHHHHTTCEEEEC-CEEEEEECTTSCEEEEEESSSCEEECSEEEECCGGGCC
T ss_pred             HHHHHHHCCCEEEEC-eEeEEEEcCCCCEEEEEECCCCEEEcCEEEECCCcchH
Confidence            445566789999999 89999876567667888999989999999999998764

>1kf6_A Fumarate reductase flavoprotein; respiration, fumarate reductace, succinate dehydrogenase, CO quinol, quinone, oxidoreductase; HET: FAD HQO CE1 1PE; 2.70A {Escherichia coli} SCOP: a.7.3.1 c.3.1.4 d.168.1.1 PDB: 1kfy_A* 1l0v_A* 2b76_A* 3cir_A* 3p4p_A* 3p4q_A* 3p4r_A* 3p4s_A*

Probab=98.23  E-value=9.8e-07  Score=91.80  Aligned_cols=37  Identities=24%  Similarity=0.322  Sum_probs=32.2

Q ss_pred             CCcEEEEcCcHHHHHHHHHHHHcCCCCCcEEEEcCCCC
Q 012165           51 NREFVIVGGGNAAGYAARTFVEHGMADGRLCIVSKEAY   88 (469)
Q Consensus        51 ~~~vvIIGgG~AGl~aA~~L~~~g~~~~~V~vie~~~~   88 (469)
                      .+||||||||+||+++|..|++.|. +.+|+|||+.+.
T Consensus         5 ~~DVvIVG~G~AGl~aAl~la~~G~-~~~V~vlEk~~~   41 (602)
T 1kf6_A            5 QADLAIVGAGGAGLRAAIAAAQANP-NAKIALISKVYP   41 (602)
T ss_dssp             ECSEEEECCSHHHHHHHHHHHHHCT-TCCEEEEESSCG
T ss_pred             cCCEEEECCCHHHHHHHHHHHhcCC-CCcEEEEeCCCC
Confidence            4799999999999999999999982 348999999753

>1v59_A Dihydrolipoamide dehydrogenase; 2-oxoacid dehydroganese complex, pyruvate dehydrogenase complex; HET: FAD NAD; 2.20A {Saccharomyces cerevisiae} SCOP: c.3.1.5 c.3.1.5 d.87.1.1 PDB: 1jeh_A*

Probab=98.23  E-value=1.2e-06  Score=88.84  Aligned_cols=98  Identities=17%  Similarity=0.316  Sum_probs=73.3

Q ss_pred             CCcEEEEcCcHHHHHHHHHHHHcCCCCCcEEEEcCCCCCCCCCCCCcccccCCCCCCCCCCCCCccccCCCCCCCCHhHH
Q 012165           51 NREFVIVGGGNAAGYAARTFVEHGMADGRLCIVSKEAYAPYERPALTKGYLFPLDKKPARLPGFHTCVGSGGERQTPEWY  130 (469)
Q Consensus        51 ~~~vvIIGgG~AGl~aA~~L~~~g~~~~~V~vie~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  130 (469)
                      .++++|||||+.|+.+|..|++.|.   +|+++++.+...   +.+..           .+           .....+.+
T Consensus       183 ~~~vvViGgG~~g~e~A~~l~~~g~---~Vtlv~~~~~~l---~~~~~-----------~~-----------~~~l~~~l  234 (478)
T 1v59_A          183 PKRLTIIGGGIIGLEMGSVYSRLGS---KVTVVEFQPQIG---ASMDG-----------EV-----------AKATQKFL  234 (478)
T ss_dssp             CSEEEEECCSHHHHHHHHHHHHTTC---EEEEECSSSSSS---SSSCH-----------HH-----------HHHHHHHH
T ss_pred             CceEEEECCCHHHHHHHHHHHHcCC---EEEEEEeCCccc---cccCH-----------HH-----------HHHHHHHH
Confidence            5799999999999999999999986   899999876421   10000           00           11235667


Q ss_pred             HHCCcEEEeCCcEEEEeC--CCc--EEEeC-----CCeEEEeccEEeccCCCCCc
Q 012165          131 KEKGIEMIYQDPVTSIDI--EKQ--TLITN-----SGKLLKYGSLIVATGCTASR  176 (469)
Q Consensus       131 ~~~~i~~~~~~~v~~id~--~~~--~v~~~-----~g~~~~yd~lVlAtG~~~~~  176 (469)
                      ++.|++++.+++|.+++.  ++.  .+.+.     +++++++|.||+|+|.+|..
T Consensus       235 ~~~gv~i~~~~~v~~i~~~~~~~~~~v~~~~~~~g~~~~~~~D~vv~a~G~~p~~  289 (478)
T 1v59_A          235 KKQGLDFKLSTKVISAKRNDDKNVVEIVVEDTKTNKQENLEAEVLLVAVGRRPYI  289 (478)
T ss_dssp             HHTTCEEECSEEEEEEEEETTTTEEEEEEEETTTTEEEEEEESEEEECSCEEECC
T ss_pred             HHCCCEEEeCCEEEEEEEecCCCeEEEEEEEcCCCCceEEECCEEEECCCCCcCC
Confidence            889999999999999986  443  45554     35679999999999988763

>1zmd_A Dihydrolipoyl dehydrogenase; lipoamide dehydrogenase, pyruvate dehydrogenase, alpha- ketoglutarate dehydrogenase; HET: FAD NAI; 2.08A {Homo sapiens} PDB: 1zmc_A* 2f5z_A* 1zy8_A* 3rnm_A*

Probab=98.22  E-value=1.6e-06  Score=87.83  Aligned_cols=98  Identities=11%  Similarity=0.166  Sum_probs=72.9

Q ss_pred             CCcEEEEcCcHHHHHHHHHHHHcCCCCCcEEEEcCCCCCCCCCCCCcccccCCCCCCCCCCCCCccccCCCCCCCCHhHH
Q 012165           51 NREFVIVGGGNAAGYAARTFVEHGMADGRLCIVSKEAYAPYERPALTKGYLFPLDKKPARLPGFHTCVGSGGERQTPEWY  130 (469)
Q Consensus        51 ~~~vvIIGgG~AGl~aA~~L~~~g~~~~~V~vie~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  130 (469)
                      .++++|||||+.|+.+|..|++.|.   +|+++++.+...-.  .+..           .+           .....+.+
T Consensus       178 ~~~vvViGgG~~g~E~A~~l~~~g~---~Vtlv~~~~~~l~~--~~~~-----------~~-----------~~~l~~~l  230 (474)
T 1zmd_A          178 PEKMVVIGAGVIGVELGSVWQRLGA---DVTAVEFLGHVGGV--GIDM-----------EI-----------SKNFQRIL  230 (474)
T ss_dssp             CSEEEEECCSHHHHHHHHHHHHTTC---EEEEECSSSSSSCS--SCCH-----------HH-----------HHHHHHHH
T ss_pred             CceEEEECCCHHHHHHHHHHHHcCC---EEEEEeccCccCCc--ccCH-----------HH-----------HHHHHHHH
Confidence            5799999999999999999999986   89999987642100  0000           00           11245667


Q ss_pred             HHCCcEEEeCCcEEEEeCCC---cEEEe-----CCCeEEEeccEEeccCCCCC
Q 012165          131 KEKGIEMIYQDPVTSIDIEK---QTLIT-----NSGKLLKYGSLIVATGCTAS  175 (469)
Q Consensus       131 ~~~~i~~~~~~~v~~id~~~---~~v~~-----~~g~~~~yd~lVlAtG~~~~  175 (469)
                      ++.|++++.+++|.+++.++   ..+++     .+++++++|.||+|+|.+|.
T Consensus       231 ~~~Gv~i~~~~~v~~i~~~~~~~~~v~~~~~~~~~~~~i~~D~vv~a~G~~p~  283 (474)
T 1zmd_A          231 QKQGFKFKLNTKVTGATKKSDGKIDVSIEAASGGKAEVITCDVLLVCIGRRPF  283 (474)
T ss_dssp             HHTTCEEECSEEEEEEEECTTSCEEEEEEETTSCCCEEEEESEEEECSCEEEC
T ss_pred             HHCCCEEEeCceEEEEEEcCCceEEEEEEecCCCCceEEEcCEEEECcCCCcC
Confidence            88999999999999998655   23442     45678999999999998875

>1xdi_A RV3303C-LPDA; reductase, FAD, NAD, NADP, unkno function; HET: FAD; 2.81A {Mycobacterium tuberculosis} SCOP: c.3.1.5 d.87.1.1

Probab=98.21  E-value=2.1e-06  Score=87.48  Aligned_cols=99  Identities=13%  Similarity=0.250  Sum_probs=75.7

Q ss_pred             CCCcEEEEcCcHHHHHHHHHHHHcCCCCCcEEEEcCCCCCCCCCCCCcccccCCCCCCCCCCCCCccccCCCCCCCCHhH
Q 012165           50 ENREFVIVGGGNAAGYAARTFVEHGMADGRLCIVSKEAYAPYERPALTKGYLFPLDKKPARLPGFHTCVGSGGERQTPEW  129 (469)
Q Consensus        50 ~~~~vvIIGgG~AGl~aA~~L~~~g~~~~~V~vie~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  129 (469)
                      ..++++|||||+.|+.+|..|++.|.   +|++++..+...   +.+..           .+           .....+.
T Consensus       181 ~~~~vvViGgG~ig~E~A~~l~~~g~---~Vtlv~~~~~~l---~~~d~-----------~~-----------~~~l~~~  232 (499)
T 1xdi_A          181 LPDHLIVVGSGVTGAEFVDAYTELGV---PVTVVASQDHVL---PYEDA-----------DA-----------ALVLEES  232 (499)
T ss_dssp             CCSSEEEESCSHHHHHHHHHHHHTTC---CEEEECSSSSSS---CCSSH-----------HH-----------HHHHHHH
T ss_pred             cCCeEEEECCCHHHHHHHHHHHHcCC---eEEEEEcCCccc---cccCH-----------HH-----------HHHHHHH
Confidence            35799999999999999999999986   799999776421   00000           00           1224566


Q ss_pred             HHHCCcEEEeCCcEEEEeCCC--cEEEeCCCeEEEeccEEeccCCCCCc
Q 012165          130 YKEKGIEMIYQDPVTSIDIEK--QTLITNSGKLLKYGSLIVATGCTASR  176 (469)
Q Consensus       130 ~~~~~i~~~~~~~v~~id~~~--~~v~~~~g~~~~yd~lVlAtG~~~~~  176 (469)
                      +++.|++++.+++|.+++.++  ..+.+.+|+++++|.||+|+|.+|..
T Consensus       233 l~~~GV~i~~~~~V~~i~~~~~~v~v~~~~g~~i~aD~Vv~a~G~~p~~  281 (499)
T 1xdi_A          233 FAERGVRLFKNARAASVTRTGAGVLVTMTDGRTVEGSHALMTIGSVPNT  281 (499)
T ss_dssp             HHHTTCEEETTCCEEEEEECSSSEEEEETTSCEEEESEEEECCCEEECC
T ss_pred             HHHCCCEEEeCCEEEEEEEeCCEEEEEECCCcEEEcCEEEECCCCCcCC
Confidence            788999999999999998655  35667788889999999999988763

>2a8x_A Dihydrolipoyl dehydrogenase, E3 component of alpha; lipoamide dehydrogenase, pyruvate dehydrogenase, alpha keto acid dehydrogenase; HET: FAD; 2.40A {Mycobacterium tuberculosis} PDB: 3ii4_A*

Probab=98.19  E-value=1.6e-06  Score=87.44  Aligned_cols=98  Identities=19%  Similarity=0.263  Sum_probs=73.1

Q ss_pred             CCCcEEEEcCcHHHHHHHHHHHHcCCCCCcEEEEcCCCCCCCCCCCCcccccCCCCCCCCCCCCCccccCCCCCCCCHhH
Q 012165           50 ENREFVIVGGGNAAGYAARTFVEHGMADGRLCIVSKEAYAPYERPALTKGYLFPLDKKPARLPGFHTCVGSGGERQTPEW  129 (469)
Q Consensus        50 ~~~~vvIIGgG~AGl~aA~~L~~~g~~~~~V~vie~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  129 (469)
                      ..++++|||||+.|+.+|..|++.|.   +|+++++.+.+.   |.+..           .+           .....+.
T Consensus       170 ~~~~vvViGgG~~g~E~A~~l~~~g~---~Vtlv~~~~~~l---~~~~~-----------~~-----------~~~l~~~  221 (464)
T 2a8x_A          170 LPKSIIIAGAGAIGMEFGYVLKNYGV---DVTIVEFLPRAL---PNEDA-----------DV-----------SKEIEKQ  221 (464)
T ss_dssp             CCSEEEEECCSHHHHHHHHHHHHTTC---EEEEECSSSSSS---TTSCH-----------HH-----------HHHHHHH
T ss_pred             cCCeEEEECCcHHHHHHHHHHHHcCC---eEEEEEcCCccc---cccCH-----------HH-----------HHHHHHH
Confidence            35799999999999999999999986   899999875421   00000           00           1123466


Q ss_pred             HHHCCcEEEeCCcEEEEeCCCc--EEEeC-CC--eEEEeccEEeccCCCCC
Q 012165          130 YKEKGIEMIYQDPVTSIDIEKQ--TLITN-SG--KLLKYGSLIVATGCTAS  175 (469)
Q Consensus       130 ~~~~~i~~~~~~~v~~id~~~~--~v~~~-~g--~~~~yd~lVlAtG~~~~  175 (469)
                      +++.|++++.++++.+++.++.  .+.+. +|  +++++|.+|+|+|.+|.
T Consensus       222 l~~~gv~i~~~~~v~~i~~~~~~~~v~~~~~g~~~~~~~D~vv~a~G~~p~  272 (464)
T 2a8x_A          222 FKKLGVTILTATKVESIADGGSQVTVTVTKDGVAQELKAEKVLQAIGFAPN  272 (464)
T ss_dssp             HHHHTCEEECSCEEEEEEECSSCEEEEEESSSCEEEEEESEEEECSCEEEC
T ss_pred             HHHcCCEEEeCcEEEEEEEcCCeEEEEEEcCCceEEEEcCEEEECCCCCcc
Confidence            7888999999999999986543  45553 56  67999999999998875

>2qcu_A Aerobic glycerol-3-phosphate dehydrogenase; glycerol-3-phoshate dehydrogenase, oxidoreductase; HET: BOG FAD TAM; 1.75A {Escherichia coli} PDB: 2r45_A* 2r46_A* 2r4e_A* 2r4j_A*

Probab=98.19  E-value=2e-06  Score=87.64  Aligned_cols=35  Identities=17%  Similarity=0.459  Sum_probs=31.8

Q ss_pred             CCCcEEEEcCcHHHHHHHHHHHHcCCCCCcEEEEcCCC
Q 012165           50 ENREFVIVGGGNAAGYAARTFVEHGMADGRLCIVSKEA   87 (469)
Q Consensus        50 ~~~~vvIIGgG~AGl~aA~~L~~~g~~~~~V~vie~~~   87 (469)
                      +++||+|||||++|+++|..|+++|.   +|+|+|+.+
T Consensus         2 ~~~DVvIIGgGi~G~~~A~~La~~G~---~V~llE~~~   36 (501)
T 2qcu_A            2 ETKDLIVIGGGINGAGIAADAAGRGL---SVLMLEAQD   36 (501)
T ss_dssp             -CBSEEEECCSHHHHHHHHHHHHTTC---CEEEECSSS
T ss_pred             CcCCEEEECcCHHHHHHHHHHHhCCC---CEEEEECCC
Confidence            45899999999999999999999987   799999975

>2bc0_A NADH oxidase; flavoprotein, pyridine nucleotide disulfide oxidoreductase, C(4A)-peroxyflavin, crystallography, conformational dynamics; HET: FAD; 2.00A {Streptococcus pyogenes} PDB: 2bcp_A* 2bc1_A*

Probab=98.19  E-value=2.5e-06  Score=86.65  Aligned_cols=99  Identities=18%  Similarity=0.315  Sum_probs=73.9

Q ss_pred             CCCCcEEEEcCcHHHHHHHHHHHHcCCCCCcEEEEcCCCCCCCCCCCCcccccCCCCCCCCCCCCCccccCCCCCCCCHh
Q 012165           49 NENREFVIVGGGNAAGYAARTFVEHGMADGRLCIVSKEAYAPYERPALTKGYLFPLDKKPARLPGFHTCVGSGGERQTPE  128 (469)
Q Consensus        49 ~~~~~vvIIGgG~AGl~aA~~L~~~g~~~~~V~vie~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  128 (469)
                      ...++++|||||+.|+.+|..|++.|.   +|+++++.+...      +. .+   +   ..+           .....+
T Consensus       192 ~~~~~vvVIGgG~ig~E~A~~l~~~g~---~Vtlv~~~~~~l------~~-~~---~---~~~-----------~~~l~~  244 (490)
T 2bc0_A          192 KDIKRVAVVGAGYIGVELAEAFQRKGK---EVVLIDVVDTCL------AG-YY---D---RDL-----------TDLMAK  244 (490)
T ss_dssp             TTCCEEEEECCSHHHHHHHHHHHHTTC---EEEEEESSSSTT------TT-TS---C---HHH-----------HHHHHH
T ss_pred             cCCceEEEECCCHHHHHHHHHHHHCCC---eEEEEEcccchh------hh-HH---H---HHH-----------HHHHHH
Confidence            345799999999999999999999986   899999876421      00 00   0   000           112346


Q ss_pred             HHHHCCcEEEeCCcEEEEeCCCc--EEEeCCCeEEEeccEEeccCCCCC
Q 012165          129 WYKEKGIEMIYQDPVTSIDIEKQ--TLITNSGKLLKYGSLIVATGCTAS  175 (469)
Q Consensus       129 ~~~~~~i~~~~~~~v~~id~~~~--~v~~~~g~~~~yd~lVlAtG~~~~  175 (469)
                      .+++.||+++.++++.+++.+++  .+.+ +++++++|.||+|+|.+|.
T Consensus       245 ~l~~~GV~i~~~~~v~~i~~~~~v~~v~~-~g~~i~~D~Vi~a~G~~p~  292 (490)
T 2bc0_A          245 NMEEHGIQLAFGETVKEVAGNGKVEKIIT-DKNEYDVDMVILAVGFRPN  292 (490)
T ss_dssp             HHHTTTCEEEETCCEEEEECSSSCCEEEE-SSCEEECSEEEECCCEEEC
T ss_pred             HHHhCCeEEEeCCEEEEEEcCCcEEEEEE-CCcEEECCEEEECCCCCcC
Confidence            67889999999999999987543  3555 6778999999999998875

>2qae_A Lipoamide, dihydrolipoyl dehydrogenase; FAD-cystine-oxidoreductase, homodimer; HET: FAD; 1.90A {Trypanosoma cruzi}

Probab=98.17  E-value=2.4e-06  Score=86.36  Aligned_cols=98  Identities=15%  Similarity=0.242  Sum_probs=72.4

Q ss_pred             CCCcEEEEcCcHHHHHHHHHHHHcCCCCCcEEEEcCCCCCCCCCCCCcccccCCCCCCCCCCCCCccccCCCCCCCCHhH
Q 012165           50 ENREFVIVGGGNAAGYAARTFVEHGMADGRLCIVSKEAYAPYERPALTKGYLFPLDKKPARLPGFHTCVGSGGERQTPEW  129 (469)
Q Consensus        50 ~~~~vvIIGgG~AGl~aA~~L~~~g~~~~~V~vie~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  129 (469)
                      ..++++|||||+.|+.+|..|++.|.   +|+++++.+...   |.+..           .+           .....+.
T Consensus       173 ~~~~vvViGgG~~g~E~A~~l~~~g~---~Vtlv~~~~~~l---~~~d~-----------~~-----------~~~l~~~  224 (468)
T 2qae_A          173 VPKTMVVIGGGVIGLELGSVWARLGA---EVTVVEFAPRCA---PTLDE-----------DV-----------TNALVGA  224 (468)
T ss_dssp             CCSEEEEECCSHHHHHHHHHHHHTTC---EEEEECSSSSSS---TTSCH-----------HH-----------HHHHHHH
T ss_pred             CCceEEEECCCHHHHHHHHHHHHhCC---EEEEEecCCccc---ccCCH-----------HH-----------HHHHHHH
Confidence            45799999999999999999999986   899999875421   10000           00           1124566


Q ss_pred             H-HHCCcEEEeCCcEEEEeCCC--cEEEeC--CC--eEEEeccEEeccCCCCC
Q 012165          130 Y-KEKGIEMIYQDPVTSIDIEK--QTLITN--SG--KLLKYGSLIVATGCTAS  175 (469)
Q Consensus       130 ~-~~~~i~~~~~~~v~~id~~~--~~v~~~--~g--~~~~yd~lVlAtG~~~~  175 (469)
                      + ++.|++++.+++|.+++.++  ..+.+.  +|  +++++|.||+|+|.+|.
T Consensus       225 l~~~~gv~i~~~~~v~~i~~~~~~~~v~~~~~~g~~~~i~~D~vv~a~G~~p~  277 (468)
T 2qae_A          225 LAKNEKMKFMTSTKVVGGTNNGDSVSLEVEGKNGKRETVTCEALLVSVGRRPF  277 (468)
T ss_dssp             HHHHTCCEEECSCEEEEEEECSSSEEEEEECC---EEEEEESEEEECSCEEEC
T ss_pred             HhhcCCcEEEeCCEEEEEEEcCCeEEEEEEcCCCceEEEECCEEEECCCcccC
Confidence            7 88999999999999998654  345554  56  67999999999998875

>3sx6_A Sulfide-quinone reductase, putative; sulfide:quinone oxidoreductase, Cys356Ala variant, integral membrane protein; HET: FAD LMT DCQ; 1.80A {Acidithiobacillus ferrooxidans} PDB: 3t0k_A* 3szc_A* 3sz0_A* 3t2z_A* 3t31_A* 3sy4_A* 3syi_A* 3sxi_A* 3t14_A* 3t2k_A* 3szw_A* 3szf_A* 3kpg_A* 3kpi_A* 3t2y_A* 3kpk_A*

Probab=98.17  E-value=6.8e-06  Score=82.22  Aligned_cols=82  Identities=24%  Similarity=0.403  Sum_probs=68.7

Q ss_pred             CeEEEEcCChHHHHHHHHHHh---CCCeEe-----------------------------eeHHHHHHcCcEEEcCCeEEE
Q 012165          208 KKVVVVGGGYIGMEVAAAAVG---WKLDTT-----------------------------RYEQLYQQNGVKFVKGASIKN  255 (469)
Q Consensus       208 ~~vvVvG~G~~g~e~A~~l~~---~g~~v~-----------------------------~~~~~l~~~gV~~~~~~~v~~  255 (469)
                      ++|+|||||+.|+.+|..|++   .+.+++                             .+.+.+++.||+++. ..++.
T Consensus         5 ~~vvIIGgG~aGl~aA~~L~~~~~~g~~Vtlie~~~~~~~~~~~~~~~~g~~~~~~~~~~l~~~~~~~gv~~~~-~~v~~   83 (437)
T 3sx6_A            5 AHVVILGAGTGGMPAAYEMKEALGSGHEVTLISANDYFQFVPSNPWVGVGWKERDDIAFPIRHYVERKGIHFIA-QSAEQ   83 (437)
T ss_dssp             CEEEEECCSTTHHHHHHHHHHHHGGGSEEEEECSSSEEECGGGHHHHHHTSSCHHHHEEECHHHHHTTTCEEEC-SCEEE
T ss_pred             CcEEEECCcHHHHHHHHHHhccCCCcCEEEEEeCCCCCcccCCccccccCccCHHHHHHHHHHHHHHCCCEEEE-eEEEE
Confidence            689999999999999999998   788887                             467788889999986 58999


Q ss_pred             EEeCCCCcEEEEEcCCCCEEeCCEEEEccCCccCCchhh
Q 012165          256 LEAGSDGRVAAVKLEDGSTIDADTIVIGIGAKPTVSPFE  294 (469)
Q Consensus       256 i~~~~~~~v~~v~~~~g~~i~~D~vi~a~G~~p~~~~~~  294 (469)
                      ++.+ +.   .|.+++|+++.+|.+|+|+|.+|+...+.
T Consensus        84 id~~-~~---~V~~~~g~~i~~d~lviAtG~~~~~~~ip  118 (437)
T 3sx6_A           84 IDAE-AQ---NITLADGNTVHYDYLMIATGPKLAFENVP  118 (437)
T ss_dssp             EETT-TT---EEEETTSCEEECSEEEECCCCEECGGGST
T ss_pred             EEcC-CC---EEEECCCCEEECCEEEECCCCCcCcccCC
Confidence            9853 22   47788998999999999999998755444

>3hyw_A Sulfide-quinone reductase; monotopic membrane protein, flavoprotein, polysulfur, oxidoreductase; HET: FAD DCQ LMT; 2.00A {Aquifex aeolicus} PDB: 3hyv_A* 3hyx_A*

Probab=98.16  E-value=3.6e-06  Score=84.03  Aligned_cols=77  Identities=27%  Similarity=0.446  Sum_probs=63.7

Q ss_pred             CeEEEEcCChHHHHHHHHHHhCC--CeEe-----------------------------eeHHHHHHcCcEEEcCCeEEEE
Q 012165          208 KKVVVVGGGYIGMEVAAAAVGWK--LDTT-----------------------------RYEQLYQQNGVKFVKGASIKNL  256 (469)
Q Consensus       208 ~~vvVvG~G~~g~e~A~~l~~~g--~~v~-----------------------------~~~~~l~~~gV~~~~~~~v~~i  256 (469)
                      |+|+|||+|+.|+.+|..|++++  .+++                             .+.+.+++.||+++.+ ++++|
T Consensus         3 K~VvIIGgG~aGl~aA~~L~~~~~~~~VtlI~~~~~~~~~p~l~~v~~g~~~~~~i~~~~~~~~~~~gv~~i~~-~v~~I   81 (430)
T 3hyw_A            3 KHVVVIGGGVGGIATAYNLRNLMPDLKITLISDRPYFGFTPAFPHLAMGWRKFEDISVPLAPLLPKFNIEFINE-KAESI   81 (430)
T ss_dssp             CEEEEECSSHHHHHHHHHHHHHCTTCEEEEECSSSEEECGGGHHHHHHTCSCGGGSEEESTTTGGGGTEEEECS-CEEEE
T ss_pred             CcEEEECCCHHHHHHHHHHhccCcCCeEEEEcCCCCCccCccHHHHhcCCCCHHHhhhcHHHHHHHCCcEEEEe-EEEEE
Confidence            68999999999999999999876  4555                             3456677889999977 69999


Q ss_pred             EeCCCCcEEEEEcCCCCEEeCCEEEEccCCccC
Q 012165          257 EAGSDGRVAAVKLEDGSTIDADTIVIGIGAKPT  289 (469)
Q Consensus       257 ~~~~~~~v~~v~~~~g~~i~~D~vi~a~G~~p~  289 (469)
                      +.+  .+  .|++++|+++++|.+|+|+|.++.
T Consensus        82 d~~--~~--~V~~~~g~~i~YD~LViAtG~~~~  110 (430)
T 3hyw_A           82 DPD--AN--TVTTQSGKKIEYDYLVIATGPKLV  110 (430)
T ss_dssp             ETT--TT--EEEETTCCEEECSEEEECCCCEEE
T ss_pred             ECC--CC--EEEECCCCEEECCEEEEeCCCCcc
Confidence            853  33  478899999999999999998754

>2dkh_A 3-hydroxybenzoate hydroxylase; flavoprotein, monooxygenase, complex, oxidoreductase; HET: FAD 3HB; 1.80A {Comamonas testosteroni} PDB: 2dki_A*

Probab=98.16  E-value=1.5e-06  Score=91.27  Aligned_cols=37  Identities=27%  Similarity=0.393  Sum_probs=33.1

Q ss_pred             CCCcEEEEcCcHHHHHHHHHHHH-cCCCCCcEEEEcCCCCC
Q 012165           50 ENREFVIVGGGNAAGYAARTFVE-HGMADGRLCIVSKEAYA   89 (469)
Q Consensus        50 ~~~~vvIIGgG~AGl~aA~~L~~-~g~~~~~V~vie~~~~~   89 (469)
                      .++||+|||||++|+++|..|++ .|.   +|+|||+.+..
T Consensus        31 ~~~dVlIVGaGpaGL~~A~~La~~~G~---~V~viEr~~~~   68 (639)
T 2dkh_A           31 SQVDVLIVGCGPAGLTLAAQLAAFPDI---RTCIVEQKEGP   68 (639)
T ss_dssp             SEEEEEEECCSHHHHHHHHHHTTCTTS---CEEEECSSSSC
T ss_pred             CCCcEEEECcCHHHHHHHHHHHHhCCC---CEEEEeCCCCC
Confidence            45799999999999999999999 887   79999998654

>3c4n_A Uncharacterized protein DR_0571; alpha-beta protein, structural genomics, PSI-2, protein structure initiative; HET: ADP; 2.40A {Deinococcus radiodurans R1}

Probab=98.16  E-value=7e-07  Score=88.49  Aligned_cols=35  Identities=23%  Similarity=0.359  Sum_probs=31.8

Q ss_pred             CCCcEEEEcCcHHHHHHHHHHHHc--CCCCCcEEEEcCCC
Q 012165           50 ENREFVIVGGGNAAGYAARTFVEH--GMADGRLCIVSKEA   87 (469)
Q Consensus        50 ~~~~vvIIGgG~AGl~aA~~L~~~--g~~~~~V~vie~~~   87 (469)
                      .++||+|||||++|+++|..|+++  |.   +|+|||+..
T Consensus        35 ~~~dVvIIGaGi~Gls~A~~La~~~pG~---~V~vlE~~~   71 (405)
T 3c4n_A           35 EAFDIVVIGAGRMGAACAFYLRQLAPGR---SLLLVEEGG   71 (405)
T ss_dssp             CEEEEEEECCSHHHHHHHHHHHHHCTTS---CEEEECSSC
T ss_pred             CcCCEEEECCcHHHHHHHHHHHhcCCCC---eEEEEeCCC
Confidence            458999999999999999999999  87   799999875

>3iwa_A FAD-dependent pyridine nucleotide-disulphide oxidoreductase; structural genomics, PSI-2, protein structur initiative; 2.30A {Desulfovibrio vulgaris}

Probab=98.15  E-value=2.3e-06  Score=86.54  Aligned_cols=98  Identities=16%  Similarity=0.175  Sum_probs=74.5

Q ss_pred             CCcEEEEcCcHHHHHHHHHHHHc-CCCCCcEEEEcCCCCCCCCCCCCcccccCCCCCCCCCCCCCccccCCCCCCCCHhH
Q 012165           51 NREFVIVGGGNAAGYAARTFVEH-GMADGRLCIVSKEAYAPYERPALTKGYLFPLDKKPARLPGFHTCVGSGGERQTPEW  129 (469)
Q Consensus        51 ~~~vvIIGgG~AGl~aA~~L~~~-g~~~~~V~vie~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  129 (469)
                      .++++|||+|+.|+.+|..|++. |.   +|++++..+...-.  .+        .   ..+           .....+.
T Consensus       159 ~~~vvViGgG~~g~e~A~~l~~~~g~---~Vtlv~~~~~~l~~--~~--------~---~~~-----------~~~l~~~  211 (472)
T 3iwa_A          159 VSKAVIVGGGFIGLEMAVSLADMWGI---DTTVVELADQIMPG--FT--------S---KSL-----------SQMLRHD  211 (472)
T ss_dssp             CSEEEEECCSHHHHHHHHHHHHHHCC---EEEEECSSSSSSTT--TS--------C---HHH-----------HHHHHHH
T ss_pred             CCEEEEECCCHHHHHHHHHHHHhcCC---cEEEEEccCccccc--cc--------C---HHH-----------HHHHHHH
Confidence            57999999999999999999998 86   89999977542100  00        0   000           1223456


Q ss_pred             HHHCCcEEEeCCcEEEEeCCCc--EEEeCCCeEEEeccEEeccCCCCC
Q 012165          130 YKEKGIEMIYQDPVTSIDIEKQ--TLITNSGKLLKYGSLIVATGCTAS  175 (469)
Q Consensus       130 ~~~~~i~~~~~~~v~~id~~~~--~v~~~~g~~~~yd~lVlAtG~~~~  175 (469)
                      +++.|++++.+++|.+++.++.  ++.+.+|+++++|.||+|+|.+|.
T Consensus       212 l~~~GV~i~~~~~v~~i~~~~~~v~v~~~~g~~i~aD~Vv~a~G~~p~  259 (472)
T 3iwa_A          212 LEKNDVVVHTGEKVVRLEGENGKVARVITDKRTLDADLVILAAGVSPN  259 (472)
T ss_dssp             HHHTTCEEECSCCEEEEEESSSBEEEEEESSCEEECSEEEECSCEEEC
T ss_pred             HHhcCCEEEeCCEEEEEEccCCeEEEEEeCCCEEEcCEEEECCCCCcC
Confidence            7889999999999999987443  467788889999999999998765

>3oc4_A Oxidoreductase, pyridine nucleotide-disulfide FAM; structural genomics, PSI-2, protein structure initiative; HET: FAD; 2.60A {Enterococcus faecalis}

Probab=98.14  E-value=4.9e-06  Score=83.62  Aligned_cols=97  Identities=15%  Similarity=0.217  Sum_probs=72.7

Q ss_pred             CCcEEEEcCcHHHHHHHHHHHHcCCCCCcEEEEcCCCCCCCCCCCCcccccCCCCCCCCCCCCCccccCCCCCCCCHhHH
Q 012165           51 NREFVIVGGGNAAGYAARTFVEHGMADGRLCIVSKEAYAPYERPALTKGYLFPLDKKPARLPGFHTCVGSGGERQTPEWY  130 (469)
Q Consensus        51 ~~~vvIIGgG~AGl~aA~~L~~~g~~~~~V~vie~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  130 (469)
                      .++++|||+|..|+.+|..|++.|.   +|+++++.+...   +.    .+   +.   .+           .....+.+
T Consensus       147 ~~~vvViGgG~~g~E~A~~l~~~g~---~Vtlv~~~~~~l---~~----~~---d~---~~-----------~~~l~~~l  199 (452)
T 3oc4_A          147 SQTVAVIGAGPIGMEAIDFLVKMKK---TVHVFESLENLL---PK----YF---DK---EM-----------VAEVQKSL  199 (452)
T ss_dssp             CSEEEEECCSHHHHHHHHHHHHTTC---EEEEEESSSSSS---TT----TC---CH---HH-----------HHHHHHHH
T ss_pred             CCEEEEECCCHHHHHHHHHHHhCCC---eEEEEEccCccc---cc----cC---CH---HH-----------HHHHHHHH
Confidence            5789999999999999999999986   899999876421   00    00   00   00           11245667


Q ss_pred             HHCCcEEEeCCcEEEEeCCC-c-EEEeCCCeEEEeccEEeccCCCCC
Q 012165          131 KEKGIEMIYQDPVTSIDIEK-Q-TLITNSGKLLKYGSLIVATGCTAS  175 (469)
Q Consensus       131 ~~~~i~~~~~~~v~~id~~~-~-~v~~~~g~~~~yd~lVlAtG~~~~  175 (469)
                      ++.|++++.+++|.+++..+ + .|.++++ ++++|.||+|+|.+|.
T Consensus       200 ~~~GV~i~~~~~v~~i~~~~~~v~v~~~~g-~i~aD~Vv~A~G~~p~  245 (452)
T 3oc4_A          200 EKQAVIFHFEETVLGIEETANGIVLETSEQ-EISCDSGIFALNLHPQ  245 (452)
T ss_dssp             HTTTEEEEETCCEEEEEECSSCEEEEESSC-EEEESEEEECSCCBCC
T ss_pred             HHcCCEEEeCCEEEEEEccCCeEEEEECCC-EEEeCEEEECcCCCCC
Confidence            88899999999999998433 3 4677766 7999999999998875

>3nlc_A Uncharacterized protein VP0956; FAD-binding protein, NESG, structural genomics, PSI-2, prote structure initiative; HET: FAD; 2.15A {Vibrio parahaemolyticus}

Probab=98.14  E-value=7.2e-06  Score=83.90  Aligned_cols=61  Identities=18%  Similarity=0.361  Sum_probs=48.0

Q ss_pred             HHHHHcCcEEEcCCeEEEEEeCCCCcEEEEEcCCCCEEeCCEEEEccCCccCCc--hhhhcCCc
Q 012165          238 QLYQQNGVKFVKGASIKNLEAGSDGRVAAVKLEDGSTIDADTIVIGIGAKPTVS--PFERVGLN  299 (469)
Q Consensus       238 ~~l~~~gV~~~~~~~v~~i~~~~~~~v~~v~~~~g~~i~~D~vi~a~G~~p~~~--~~~~~gl~  299 (469)
                      +.+++.|++++++++|+++..+ ++.+..|.+.+|+++.+|.||+|+|..+...  .+...|+.
T Consensus       228 ~~l~~~Gv~I~~~t~V~~I~~~-~~~v~gV~l~~G~~i~Ad~VVlA~G~~s~~~~~~l~~~Gi~  290 (549)
T 3nlc_A          228 ATIIELGGEIRFSTRVDDLHME-DGQITGVTLSNGEEIKSRHVVLAVGHSARDTFEMLHERGVY  290 (549)
T ss_dssp             HHHHHTTCEEESSCCEEEEEES-SSBEEEEEETTSCEEECSCEEECCCTTCHHHHHHHHHTTCC
T ss_pred             HHHHhcCCEEEeCCEEEEEEEe-CCEEEEEEECCCCEEECCEEEECCCCChhhHHHHHHHcCCC
Confidence            3455689999999999999864 5667789999999999999999999988522  34555544

>1dxl_A Dihydrolipoamide dehydrogenase; oxidoreductase, multienzyme complex protein, pyruvate dehydrogenase complex, glycine decarboxylase complex; HET: FAD; 3.15A {Pisum sativum} SCOP: c.3.1.5 c.3.1.5 d.87.1.1

Probab=98.13  E-value=1.9e-06  Score=87.08  Aligned_cols=98  Identities=15%  Similarity=0.308  Sum_probs=73.3

Q ss_pred             CCCcEEEEcCcHHHHHHHHHHHHcCCCCCcEEEEcCCCCCCCCCCCCcccccCCCCCCCCCCCCCccccCCCCCCCCHhH
Q 012165           50 ENREFVIVGGGNAAGYAARTFVEHGMADGRLCIVSKEAYAPYERPALTKGYLFPLDKKPARLPGFHTCVGSGGERQTPEW  129 (469)
Q Consensus        50 ~~~~vvIIGgG~AGl~aA~~L~~~g~~~~~V~vie~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  129 (469)
                      ..++++|||||+.|+.+|..|++.|.   +|+++++.+...   |.+..           .+           .....+.
T Consensus       176 ~~~~vvViGgG~~g~e~A~~l~~~g~---~Vtli~~~~~~l---~~~~~-----------~~-----------~~~l~~~  227 (470)
T 1dxl_A          176 IPKKLVVIGAGYIGLEMGSVWGRIGS---EVTVVEFASEIV---PTMDA-----------EI-----------RKQFQRS  227 (470)
T ss_dssp             CCSEEEESCCSHHHHHHHHHHHHHTC---EEEEECSSSSSS---TTSCH-----------HH-----------HHHHHHH
T ss_pred             cCCeEEEECCCHHHHHHHHHHHHcCC---cEEEEEcCCccc---ccccH-----------HH-----------HHHHHHH
Confidence            35799999999999999999999986   899999876421   10000           00           1123566


Q ss_pred             HHHCCcEEEeCCcEEEEeCCCc--EEEeC---CC--eEEEeccEEeccCCCCC
Q 012165          130 YKEKGIEMIYQDPVTSIDIEKQ--TLITN---SG--KLLKYGSLIVATGCTAS  175 (469)
Q Consensus       130 ~~~~~i~~~~~~~v~~id~~~~--~v~~~---~g--~~~~yd~lVlAtG~~~~  175 (469)
                      +++.|++++.+++|.+++.++.  .+.+.   +|  +++++|.||+|+|.+|.
T Consensus       228 l~~~gv~i~~~~~v~~i~~~~~~~~v~~~~~~~g~~~~~~~D~vv~a~G~~p~  280 (470)
T 1dxl_A          228 LEKQGMKFKLKTKVVGVDTSGDGVKLTVEPSAGGEQTIIEADVVLVSAGRTPF  280 (470)
T ss_dssp             HHHSSCCEECSEEEEEEECSSSSEEEEEEESSSCCCEEEEESEEECCCCEEEC
T ss_pred             HHHcCCEEEeCCEEEEEEEcCCeEEEEEEecCCCcceEEECCEEEECCCCCcC
Confidence            7889999999999999987653  44543   44  67999999999998875

>3jsk_A Cypbp37 protein; octameric thiazole synthase, biosynthetic protein; HET: AHZ; 2.70A {Neurospora crassa}

Probab=98.13  E-value=1.2e-06  Score=83.68  Aligned_cols=38  Identities=26%  Similarity=0.347  Sum_probs=33.3

Q ss_pred             CCCcEEEEcCcHHHHHHHHHHHHc--CCCCCcEEEEcCCCCCC
Q 012165           50 ENREFVIVGGGNAAGYAARTFVEH--GMADGRLCIVSKEAYAP   90 (469)
Q Consensus        50 ~~~~vvIIGgG~AGl~aA~~L~~~--g~~~~~V~vie~~~~~~   90 (469)
                      ..+||+|||||++|+++|..|+++  |.   +|+|+|+.+...
T Consensus        78 ~~~DVvIVGgG~AGL~aA~~La~~~~G~---~V~LiEk~~~~G  117 (344)
T 3jsk_A           78 AETDIVIVGAGSCGLSAAYVLSTLRPDL---RITIVEAGVAPG  117 (344)
T ss_dssp             HBCSEEEECCSHHHHHHHHHHHHHCTTS---CEEEEESSSSCC
T ss_pred             CcCCEEEECccHHHHHHHHHHHhcCCCC---EEEEEeCCCccC
Confidence            458999999999999999999997  66   799999987543

>3o0h_A Glutathione reductase; ssgcid, structur genomics, seattle structural genomics center for infectious gluathione reductase, oxidoreductase; HET: FAD; 1.90A {Bartonella henselae}

Probab=98.13  E-value=3.6e-06  Score=85.41  Aligned_cols=98  Identities=20%  Similarity=0.343  Sum_probs=75.3

Q ss_pred             CCCcEEEEcCcHHHHHHHHHHHHcCCCCCcEEEEcCCCCCCCCCCCCcccccCCCCCCCCCCCCCccccCCCCCCCCHhH
Q 012165           50 ENREFVIVGGGNAAGYAARTFVEHGMADGRLCIVSKEAYAPYERPALTKGYLFPLDKKPARLPGFHTCVGSGGERQTPEW  129 (469)
Q Consensus        50 ~~~~vvIIGgG~AGl~aA~~L~~~g~~~~~V~vie~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  129 (469)
                      ..++++|||+|+.|+.+|..|++.|.   +|++++..+...   +.+..           .+           .....+.
T Consensus       190 ~~~~v~ViGgG~~g~e~A~~l~~~g~---~Vtli~~~~~~l---~~~~~-----------~~-----------~~~l~~~  241 (484)
T 3o0h_A          190 LPKSIVIVGGGYIGVEFANIFHGLGV---KTTLLHRGDLIL---RNFDY-----------DL-----------RQLLNDA  241 (484)
T ss_dssp             CCSEEEEECCSHHHHHHHHHHHHTTC---EEEEECSSSSSS---TTSCH-----------HH-----------HHHHHHH
T ss_pred             cCCcEEEECcCHHHHHHHHHHHHcCC---eEEEEECCCccc---cccCH-----------HH-----------HHHHHHH
Confidence            35799999999999999999999876   799999776421   00000           00           1123456


Q ss_pred             HHHCCcEEEeCCcEEEEeCCCc--EEEeCCCeEEEeccEEeccCCCCC
Q 012165          130 YKEKGIEMIYQDPVTSIDIEKQ--TLITNSGKLLKYGSLIVATGCTAS  175 (469)
Q Consensus       130 ~~~~~i~~~~~~~v~~id~~~~--~v~~~~g~~~~yd~lVlAtG~~~~  175 (469)
                      +++.|++++.+++|.+++.++.  .|++.+|+++++|.||+|+|.+|.
T Consensus       242 l~~~Gv~i~~~~~V~~i~~~~~~v~v~~~~g~~i~aD~Vi~A~G~~p~  289 (484)
T 3o0h_A          242 MVAKGISIIYEATVSQVQSTENCYNVVLTNGQTICADRVMLATGRVPN  289 (484)
T ss_dssp             HHHHTCEEESSCCEEEEEECSSSEEEEETTSCEEEESEEEECCCEEEC
T ss_pred             HHHCCCEEEeCCEEEEEEeeCCEEEEEECCCcEEEcCEEEEeeCCCcC
Confidence            7788999999999999987543  678889988999999999998775

>2cdu_A NADPH oxidase; flavoenzyme, oxidoreductase; HET: FAD ADP; 1.8A {Lactobacillus sanfranciscensis}

Probab=98.13  E-value=3.3e-06  Score=84.86  Aligned_cols=99  Identities=15%  Similarity=0.308  Sum_probs=72.6

Q ss_pred             CCCcEEEEcCcHHHHHHHHHHHHcCCCCCcEEEEcCCCCCCCCCCCCcccccCCCCCCCCCCCCCccccCCCCCCCCHhH
Q 012165           50 ENREFVIVGGGNAAGYAARTFVEHGMADGRLCIVSKEAYAPYERPALTKGYLFPLDKKPARLPGFHTCVGSGGERQTPEW  129 (469)
Q Consensus        50 ~~~~vvIIGgG~AGl~aA~~L~~~g~~~~~V~vie~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  129 (469)
                      ..++++|||||+.|+.+|..|++.|.   +|+++++.+...-.  .+..           .+           .....+.
T Consensus       148 ~~~~vvViGgG~~g~E~A~~l~~~g~---~Vtlv~~~~~~l~~--~~~~-----------~~-----------~~~l~~~  200 (452)
T 2cdu_A          148 KAKTITIIGSGYIGAELAEAYSNQNY---NVNLIDGHERVLYK--YFDK-----------EF-----------TDILAKD  200 (452)
T ss_dssp             GCSEEEEECCSHHHHHHHHHHHTTTC---EEEEEESSSSTTTT--TSCH-----------HH-----------HHHHHHH
T ss_pred             cCCeEEEECcCHHHHHHHHHHHhcCC---EEEEEEcCCchhhh--hhhh-----------hH-----------HHHHHHH
Confidence            35789999999999999999999876   89999987542100  0000           00           1123566


Q ss_pred             HHHCCcEEEeCCcEEEEeCCCcEE--EeCCCeEEEeccEEeccCCCCC
Q 012165          130 YKEKGIEMIYQDPVTSIDIEKQTL--ITNSGKLLKYGSLIVATGCTAS  175 (469)
Q Consensus       130 ~~~~~i~~~~~~~v~~id~~~~~v--~~~~g~~~~yd~lVlAtG~~~~  175 (469)
                      +++.|++++.+++|.+++.++..+  ...+|+++++|.||+|+|.+|.
T Consensus       201 l~~~Gv~i~~~~~v~~i~~~~~~v~~v~~~g~~i~~D~vv~a~G~~p~  248 (452)
T 2cdu_A          201 YEAHGVNLVLGSKVAAFEEVDDEIITKTLDGKEIKSDIAILCIGFRPN  248 (452)
T ss_dssp             HHHTTCEEEESSCEEEEEEETTEEEEEETTSCEEEESEEEECCCEEEC
T ss_pred             HHHCCCEEEcCCeeEEEEcCCCeEEEEEeCCCEEECCEEEECcCCCCC
Confidence            788999999999999998633322  2337788999999999998875

>3ntd_A FAD-dependent pyridine nucleotide-disulphide oxidoreductase; COA, persulfide reductase, rhodanese; HET: COA FAD; 1.99A {Shewanella loihica} PDB: 3nta_A* 3nt6_A*

Probab=98.12  E-value=3.2e-06  Score=87.49  Aligned_cols=97  Identities=15%  Similarity=0.285  Sum_probs=73.6

Q ss_pred             CCcEEEEcCcHHHHHHHHHHHHcCCCCCcEEEEcCCCCCCCCCCCCcccccCCCCCCCCCCCCCccccCCCCCCCCHhHH
Q 012165           51 NREFVIVGGGNAAGYAARTFVEHGMADGRLCIVSKEAYAPYERPALTKGYLFPLDKKPARLPGFHTCVGSGGERQTPEWY  130 (469)
Q Consensus        51 ~~~vvIIGgG~AGl~aA~~L~~~g~~~~~V~vie~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  130 (469)
                      .++++|||||+.|+.+|..|++.|.   +|+++++.+...   +.+..           .+           .....+.+
T Consensus       151 ~~~vvViGgG~~g~e~A~~l~~~g~---~Vtlv~~~~~~l---~~~~~-----------~~-----------~~~l~~~l  202 (565)
T 3ntd_A          151 VEHATVVGGGFIGLEMMESLHHLGI---KTTLLELADQVM---TPVDR-----------EM-----------AGFAHQAI  202 (565)
T ss_dssp             CSEEEEECCSHHHHHHHHHHHHTTC---EEEEEESSSSSC---TTSCH-----------HH-----------HHHHHHHH
T ss_pred             CCEEEEECCCHHHHHHHHHHHhcCC---cEEEEEcCCccc---hhcCH-----------HH-----------HHHHHHHH
Confidence            4699999999999999999999986   799999865320   10000           00           01234567


Q ss_pred             HHCCcEEEeCCcEEEEeC-------------------CCc--EEEeCCCeEEEeccEEeccCCCCC
Q 012165          131 KEKGIEMIYQDPVTSIDI-------------------EKQ--TLITNSGKLLKYGSLIVATGCTAS  175 (469)
Q Consensus       131 ~~~~i~~~~~~~v~~id~-------------------~~~--~v~~~~g~~~~yd~lVlAtG~~~~  175 (469)
                      ++.|++++.++++.+++.                   ...  .+.+.+|+++++|.||+|+|.+|.
T Consensus       203 ~~~GV~i~~~~~v~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~g~~i~~D~vi~a~G~~p~  268 (565)
T 3ntd_A          203 RDQGVDLRLGTALSEVSYQVQTHVASDAAGEDTAHQHIKGHLSLTLSNGELLETDLLIMAIGVRPE  268 (565)
T ss_dssp             HHTTCEEEETCCEEEEEEECCCCCCCGGGTCCCTTCCTTCEEEEEETTSCEEEESEEEECSCEEEC
T ss_pred             HHCCCEEEeCCeEEEEeccccccccccccccccccccCCCcEEEEEcCCCEEEcCEEEECcCCccc
Confidence            889999999999999976                   222  567788889999999999998775

>3cgb_A Pyridine nucleotide-disulfide oxidoreductase, CLA; coenzyme A, flavin adenine dinucleotide, selenomethionine, F flavoprotein; HET: COA FAD; 1.90A {Bacillus anthracis str} PDB: 3cgc_A* 3cgd_A* 3cge_A*

Probab=98.12  E-value=2.9e-06  Score=86.01  Aligned_cols=97  Identities=18%  Similarity=0.270  Sum_probs=72.5

Q ss_pred             CCCcEEEEcCcHHHHHHHHHHHHcCCCCCcEEEEcCCCCCCCCCCCCcccccCCCCCCCCCCCCCccccCCCCCCCCHhH
Q 012165           50 ENREFVIVGGGNAAGYAARTFVEHGMADGRLCIVSKEAYAPYERPALTKGYLFPLDKKPARLPGFHTCVGSGGERQTPEW  129 (469)
Q Consensus        50 ~~~~vvIIGgG~AGl~aA~~L~~~g~~~~~V~vie~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  129 (469)
                      ..++++|||||+.|+.+|..|++.|.   +|+++++.+...   +.+.           ..+           .....+.
T Consensus       185 ~~~~vvViGgG~~g~e~A~~l~~~g~---~Vtlv~~~~~~l---~~~~-----------~~~-----------~~~l~~~  236 (480)
T 3cgb_A          185 KVEDVTIIGGGAIGLEMAETFVELGK---KVRMIERNDHIG---TIYD-----------GDM-----------AEYIYKE  236 (480)
T ss_dssp             CCCEEEEECCHHHHHHHHHHHHHTTC---EEEEECCGGGTT---SSSC-----------HHH-----------HHHHHHH
T ss_pred             CCCeEEEECCCHHHHHHHHHHHhcCC---eEEEEEeCCchh---hcCC-----------HHH-----------HHHHHHH
Confidence            46899999999999999999999986   799999875421   0000           000           1123456


Q ss_pred             HHHCCcEEEeCCcEEEEeCCCcE--EEeCCCeEEEeccEEeccCCCCC
Q 012165          130 YKEKGIEMIYQDPVTSIDIEKQT--LITNSGKLLKYGSLIVATGCTAS  175 (469)
Q Consensus       130 ~~~~~i~~~~~~~v~~id~~~~~--v~~~~g~~~~yd~lVlAtG~~~~  175 (469)
                      +++.|++++.+++|.+++.+++.  +.++ +.++++|.||+|+|..|.
T Consensus       237 l~~~Gv~i~~~~~v~~i~~~~~v~~v~~~-~~~i~~D~vi~a~G~~p~  283 (480)
T 3cgb_A          237 ADKHHIEILTNENVKAFKGNERVEAVETD-KGTYKADLVLVSVGVKPN  283 (480)
T ss_dssp             HHHTTCEEECSCCEEEEEESSBEEEEEET-TEEEECSEEEECSCEEES
T ss_pred             HHHcCcEEEcCCEEEEEEcCCcEEEEEEC-CCEEEcCEEEECcCCCcC
Confidence            78899999999999999876542  4554 457999999999998875

>2gjc_A Thiazole biosynthetic enzyme, mitochondrial; glutathione reductase type II family, thiazole synthase, mitochondria DNA repair; HET: AHZ; 1.82A {Saccharomyces cerevisiae} PDB: 3fpz_A*

Probab=98.11  E-value=3.8e-05  Score=72.93  Aligned_cols=37  Identities=22%  Similarity=0.469  Sum_probs=32.6

Q ss_pred             CCCcEEEEcCcHHHHHHHHHHHHc--CCCCCcEEEEcCCCCC
Q 012165           50 ENREFVIVGGGNAAGYAARTFVEH--GMADGRLCIVSKEAYA   89 (469)
Q Consensus        50 ~~~~vvIIGgG~AGl~aA~~L~~~--g~~~~~V~vie~~~~~   89 (469)
                      ..+||+|||||++|+++|..|++.  |.   +|+|+|+.+..
T Consensus        64 ~~~dv~IiG~G~aGl~aA~~la~~~~g~---~V~v~e~~~~~  102 (326)
T 2gjc_A           64 AVSDVIIVGAGSSGLSAAYVIAKNRPDL---KVCIIESSVAP  102 (326)
T ss_dssp             TEESEEEECCSHHHHHHHHHHHHHCTTS---CEEEECSSSSC
T ss_pred             CcCCEEEECccHHHHHHHHHHHhcCCCC---eEEEEecCccc
Confidence            346999999999999999999998  65   89999998754

>2r0c_A REBC; flavin adenine dinucleotide, monooxygenase, oxidoreductase; HET: FAD; 1.80A {Lechevalieria aerocolonigenes} PDB: 2r0g_A* 2r0p_A* 3ept_A*

Probab=98.10  E-value=3.7e-06  Score=86.72  Aligned_cols=37  Identities=16%  Similarity=0.226  Sum_probs=33.2

Q ss_pred             CCCcEEEEcCcHHHHHHHHHHHHcCCCCCcEEEEcCCCCC
Q 012165           50 ENREFVIVGGGNAAGYAARTFVEHGMADGRLCIVSKEAYA   89 (469)
Q Consensus        50 ~~~~vvIIGgG~AGl~aA~~L~~~g~~~~~V~vie~~~~~   89 (469)
                      ..+||+|||||++|+++|..|++.|.   +|+|+|+.+..
T Consensus        25 ~~~dVlIVGaGpaGl~~A~~La~~G~---~V~vlEr~~~~   61 (549)
T 2r0c_A           25 IETDVLILGGGPVGMALALDLAHRQV---GHLVVEQTDGT   61 (549)
T ss_dssp             EEEEEEEECCSHHHHHHHHHHHHTTC---CEEEECSSCSC
T ss_pred             CCCCEEEECcCHHHHHHHHHHHHCCC---CEEEEeCCCCC
Confidence            34799999999999999999999987   79999998654

>1zk7_A HGII, reductase, mercuric reductase; mercuric ION reductase, oxidoreductase; HET: FAD; 1.60A {Pseudomonas aeruginosa} PDB: 1zx9_A*

Probab=98.09  E-value=4.5e-06  Score=84.25  Aligned_cols=96  Identities=18%  Similarity=0.269  Sum_probs=73.1

Q ss_pred             CCCcEEEEcCcHHHHHHHHHHHHcCCCCCcEEEEcCCCCCCCCCCCCcccccCCCCCCCCCCCCCccccCCCCCCCCHhH
Q 012165           50 ENREFVIVGGGNAAGYAARTFVEHGMADGRLCIVSKEAYAPYERPALTKGYLFPLDKKPARLPGFHTCVGSGGERQTPEW  129 (469)
Q Consensus        50 ~~~~vvIIGgG~AGl~aA~~L~~~g~~~~~V~vie~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  129 (469)
                      ..++++|||||+.|+.+|..|++.|.   +|+++++.+.+.   | +..           .+           .....+.
T Consensus       175 ~~~~vvViGgG~~g~E~A~~l~~~g~---~Vtlv~~~~~~l---~-~~~-----------~~-----------~~~l~~~  225 (467)
T 1zk7_A          175 IPERLAVIGSSVVALELAQAFARLGS---KVTVLARNTLFF---R-EDP-----------AI-----------GEAVTAA  225 (467)
T ss_dssp             CCSEEEEECCSHHHHHHHHHHHHTTC---EEEEECSSCTTT---T-SCH-----------HH-----------HHHHHHH
T ss_pred             cCCEEEEECCCHHHHHHHHHHHHcCC---EEEEEEECCccC---C-CCH-----------HH-----------HHHHHHH
Confidence            35799999999999999999999986   899999876420   0 100           00           1234566


Q ss_pred             HHHCCcEEEeCCcEEEEeCCCc--EEEeCCCeEEEeccEEeccCCCCC
Q 012165          130 YKEKGIEMIYQDPVTSIDIEKQ--TLITNSGKLLKYGSLIVATGCTAS  175 (469)
Q Consensus       130 ~~~~~i~~~~~~~v~~id~~~~--~v~~~~g~~~~yd~lVlAtG~~~~  175 (469)
                      +++.|++++.+++|.+++.++.  .|.++ +.++++|.||+|+|.+|.
T Consensus       226 l~~~Gv~i~~~~~v~~i~~~~~~~~v~~~-~~~i~aD~Vv~a~G~~p~  272 (467)
T 1zk7_A          226 FRAEGIEVLEHTQASQVAHMDGEFVLTTT-HGELRADKLLVATGRTPN  272 (467)
T ss_dssp             HHHTTCEEETTCCEEEEEEETTEEEEEET-TEEEEESEEEECSCEEES
T ss_pred             HHhCCCEEEcCCEEEEEEEeCCEEEEEEC-CcEEEcCEEEECCCCCcC
Confidence            7889999999999999986554  35565 557999999999998875

>4a9w_A Monooxygenase; baeyer-villiger, FAD, oxidoreductase; HET: FAD; 2.72A {Stenotrophomonas maltophilia}

Probab=98.07  E-value=2.2e-05  Score=75.71  Aligned_cols=78  Identities=18%  Similarity=0.201  Sum_probs=63.2

Q ss_pred             CeEEEEcCChHHHHHHHHHHhCCCeEe--------------------------------------------------eeH
Q 012165          208 KKVVVVGGGYIGMEVAAAAVGWKLDTT--------------------------------------------------RYE  237 (469)
Q Consensus       208 ~~vvVvG~G~~g~e~A~~l~~~g~~v~--------------------------------------------------~~~  237 (469)
                      .+|+|||+|+.|+.+|..|++.|.+++                                                  .+.
T Consensus         4 ~~vvIIG~G~aGl~~A~~l~~~g~~v~vie~~~~~gg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~   83 (357)
T 4a9w_A            4 VDVVVIGGGQSGLSAGYFLRRSGLSYVILDAEASPGGAWQHAWHSLHLFSPAGWSSIPGWPMPASQGPYPARAEVLAYLA   83 (357)
T ss_dssp             EEEEEECCSHHHHHHHHHHHHSSCCEEEECCSSSSSGGGGGSCTTCBCSSCGGGSCCSSSCCCCCSSSSCBHHHHHHHHH
T ss_pred             CCEEEECcCHHHHHHHHHHHHCCCCEEEEECCCCCCCcccCCCCCcEecCchhhhhCCCCCCCCCccCCCCHHHHHHHHH
Confidence            379999999999999999999988776                                                  123


Q ss_pred             HHHHHcCcEEEcCCeEEEEEeCCCCcEEEEEcCCCCEEeCCEEEEccCCc
Q 012165          238 QLYQQNGVKFVKGASIKNLEAGSDGRVAAVKLEDGSTIDADTIVIGIGAK  287 (469)
Q Consensus       238 ~~l~~~gV~~~~~~~v~~i~~~~~~~v~~v~~~~g~~i~~D~vi~a~G~~  287 (469)
                      +.+++.|++++++++|++++.. ++....|.+.+| ++.+|.||+|+|..
T Consensus        84 ~~~~~~~~~~~~~~~v~~i~~~-~~~~~~v~~~~g-~~~~d~vV~AtG~~  131 (357)
T 4a9w_A           84 QYEQKYALPVLRPIRVQRVSHF-GERLRVVARDGR-QWLARAVISATGTW  131 (357)
T ss_dssp             HHHHHTTCCEECSCCEEEEEEE-TTEEEEEETTSC-EEEEEEEEECCCSG
T ss_pred             HHHHHcCCEEEcCCEEEEEEEC-CCcEEEEEeCCC-EEEeCEEEECCCCC
Confidence            4456679999999999999864 333322788887 89999999999963

>3da1_A Glycerol-3-phosphate dehydrogenase; NESG BHR167 Q9KDW6 X-RAY, structural genomics, PSI-2, protein structure initiative; HET: FAD; 2.70A {Bacillus halodurans}

Probab=98.07  E-value=6.7e-06  Score=84.89  Aligned_cols=36  Identities=17%  Similarity=0.326  Sum_probs=33.1

Q ss_pred             CCCCcEEEEcCcHHHHHHHHHHHHcCCCCCcEEEEcCCC
Q 012165           49 NENREFVIVGGGNAAGYAARTFVEHGMADGRLCIVSKEA   87 (469)
Q Consensus        49 ~~~~~vvIIGgG~AGl~aA~~L~~~g~~~~~V~vie~~~   87 (469)
                      +..+||+|||||++|+++|..|+++|+   +|+|+|+.+
T Consensus        16 ~~~~DVvVIGgGi~Gl~~A~~La~~G~---~V~LlEk~d   51 (561)
T 3da1_A           16 EKQLDLLVIGGGITGAGIALDAQVRGI---QTGLVEMND   51 (561)
T ss_dssp             TSCEEEEEECCSHHHHHHHHHHHTTTC---CEEEEESSS
T ss_pred             CCCCCEEEECCCHHHHHHHHHHHhCCC---cEEEEECCC
Confidence            456899999999999999999999998   799999975

>3ic9_A Dihydrolipoamide dehydrogenase; APC62701, colwellia psychrer 34H, structural genomics, PSI-2; HET: FAD; 2.15A {Colwellia psychrerythraea}

Probab=98.07  E-value=4.8e-06  Score=84.65  Aligned_cols=97  Identities=14%  Similarity=0.173  Sum_probs=70.9

Q ss_pred             CCCcEEEEcCcHHHHHHHHHHHHcCCCCCcEEEEcCCCCCCCCCCCCcccccCCCCCCCCCCCCCccccCCCCCCCCHhH
Q 012165           50 ENREFVIVGGGNAAGYAARTFVEHGMADGRLCIVSKEAYAPYERPALTKGYLFPLDKKPARLPGFHTCVGSGGERQTPEW  129 (469)
Q Consensus        50 ~~~~vvIIGgG~AGl~aA~~L~~~g~~~~~V~vie~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  129 (469)
                      ..++++|||||+.|+.+|..|++.|.   +|+++++.+...   +.+..           .+           .....+.
T Consensus       173 ~~k~vvViGgG~ig~E~A~~l~~~g~---~Vtlv~~~~~~l---~~~d~-----------~~-----------~~~l~~~  224 (492)
T 3ic9_A          173 LPKSVAVFGPGVIGLELGQALSRLGV---IVKVFGRSGSVA---NLQDE-----------EM-----------KRYAEKT  224 (492)
T ss_dssp             CCSEEEEESSCHHHHHHHHHHHHTTC---EEEEECCTTCCT---TCCCH-----------HH-----------HHHHHHH
T ss_pred             cCCeEEEECCCHHHHHHHHHHHHcCC---eEEEEEECCccc---ccCCH-----------HH-----------HHHHHHH
Confidence            46899999999999999999999986   799999876531   10000           00           0123345


Q ss_pred             HHHCCcEEEeCCcEEEEeCCCc--EEEeC--CC--eEEEeccEEeccCCCCC
Q 012165          130 YKEKGIEMIYQDPVTSIDIEKQ--TLITN--SG--KLLKYGSLIVATGCTAS  175 (469)
Q Consensus       130 ~~~~~i~~~~~~~v~~id~~~~--~v~~~--~g--~~~~yd~lVlAtG~~~~  175 (469)
                      +++. ++++.++++..+..++.  .+.+.  +|  .++++|.||+|+|.+|.
T Consensus       225 l~~~-V~i~~~~~v~~i~~~~~~v~v~~~~~~G~~~~i~~D~Vi~a~G~~p~  275 (492)
T 3ic9_A          225 FNEE-FYFDAKARVISTIEKEDAVEVIYFDKSGQKTTESFQYVLAATGRKAN  275 (492)
T ss_dssp             HHTT-SEEETTCEEEEEEECSSSEEEEEECTTCCEEEEEESEEEECSCCEES
T ss_pred             HhhC-cEEEECCEEEEEEEcCCEEEEEEEeCCCceEEEECCEEEEeeCCccC
Confidence            5566 99999999999976543  45553  66  67999999999998875

>3d1c_A Flavin-containing putative monooxygenase; NP_373108.1, struc genomics, joint center for structural genomics, JCSG; HET: FAD UNL; 2.40A {Staphylococcus aureus}

Probab=98.06  E-value=5.3e-06  Score=80.75  Aligned_cols=104  Identities=23%  Similarity=0.346  Sum_probs=68.6

Q ss_pred             CCcEEEEcCcHHHHHHHHHHHHcCCCCCcEEEEcCCCCCCCCCCCCcccccCCCCCCCCCCCCCccccCCCCCCCCHhHH
Q 012165           51 NREFVIVGGGNAAGYAARTFVEHGMADGRLCIVSKEAYAPYERPALTKGYLFPLDKKPARLPGFHTCVGSGGERQTPEWY  130 (469)
Q Consensus        51 ~~~vvIIGgG~AGl~aA~~L~~~g~~~~~V~vie~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  130 (469)
                      .++|+|||+|..|+.+|..|++.|.   +|+++++.+...-  +...     + .   ..++..       ......+.+
T Consensus       166 ~~~vvVvG~G~~g~e~a~~l~~~g~---~V~lv~~~~~~~~--~~~d-----~-~---~~~~~~-------~~~~l~~~l  224 (369)
T 3d1c_A          166 KGQYVVIGGNESGFDAAYQLAKNGS---DIALYTSTTGLND--PDAD-----P-S---VRLSPY-------TRQRLGNVI  224 (369)
T ss_dssp             SSEEEEECCSHHHHHHHHHHHHTTC---EEEEECC-----------------C-T---TSCCHH-------HHHHHHHHH
T ss_pred             CCEEEEECCCcCHHHHHHHHHhcCC---eEEEEecCCCCCC--CCCC-----C-C---ccCCHH-------HHHHHHHHH
Confidence            4689999999999999999999876   8999998764310  0000     0 0   000000       001234455


Q ss_pred             HHCC-cEEEeCCcEEEEeC--CCcEEEeCCCeEEE-eccEEeccCCCCC
Q 012165          131 KEKG-IEMIYQDPVTSIDI--EKQTLITNSGKLLK-YGSLIVATGCTAS  175 (469)
Q Consensus       131 ~~~~-i~~~~~~~v~~id~--~~~~v~~~~g~~~~-yd~lVlAtG~~~~  175 (469)
                      ++.+ ++++.+.++..++.  +...|++.+|+++. +|.+|+|||..|.
T Consensus       225 ~~~g~v~~~~~~~v~~i~~~~~~~~v~~~~g~~~~~~d~vi~a~G~~~~  273 (369)
T 3d1c_A          225 KQGARIEMNVHYTVKDIDFNNGQYHISFDSGQSVHTPHEPILATGFDAT  273 (369)
T ss_dssp             HTTCCEEEECSCCEEEEEEETTEEEEEESSSCCEEESSCCEECCCBCGG
T ss_pred             hhCCcEEEecCcEEEEEEecCCceEEEecCCeEeccCCceEEeeccCCc
Confidence            6675 99999999999954  33367788887775 5999999998875

>3vrd_B FCCB subunit, flavocytochrome C flavin subunit; sulfide oxidation, heme C binding, FAD binding, electron TRA oxidoreductase complex; HET: HEC FAD; 1.50A {Thermochromatium tepidum} PDB: 1fcd_A*

Probab=98.06  E-value=1.5e-05  Score=78.74  Aligned_cols=82  Identities=24%  Similarity=0.268  Sum_probs=65.4

Q ss_pred             CCeEEEEcCChHHHHHHHHHHhCCC--eEe----------------------------eeHHHHHHcCcEEEcCCeEEEE
Q 012165          207 AKKVVVVGGGYIGMEVAAAAVGWKL--DTT----------------------------RYEQLYQQNGVKFVKGASIKNL  256 (469)
Q Consensus       207 ~~~vvVvG~G~~g~e~A~~l~~~g~--~v~----------------------------~~~~~l~~~gV~~~~~~~v~~i  256 (469)
                      +|+|+|||+|+.|+.+|..|++.+.  +|+                            .-.+.+.+.||+++.+ +++.|
T Consensus         2 GKkVvIIG~G~AG~~aA~~L~~~~~~~~Vtlie~~~~~~~~p~~~~v~~g~~~~~~~~~~~~~~~~~gv~~i~~-~v~~i   80 (401)
T 3vrd_B            2 GRKVVVVGGGTGGATAAKYIKLADPSIEVTLIEPNETYYTCYMSNEVIGGDRELASLRVGYDGLRAHGIQVVHD-SALGI   80 (401)
T ss_dssp             CCEEEEECCSHHHHHHHHHHHHHCTTSEEEEECSCSSEECSTTHHHHHHTSSCGGGGEECSHHHHHTTCEEECS-CEEEE
T ss_pred             cCEEEEECCcHHHHHHHHHHHhcCcCCeEEEEeCCCCCCCccCHHHHhcCCCCHHHHhhCHHHHHHCCCEEEEe-EEEEE
Confidence            7899999999999999999987664  555                            2234566789999876 68899


Q ss_pred             EeCCCCcEEEEEcCCCCEEeCCEEEEccCCccCCchh
Q 012165          257 EAGSDGRVAAVKLEDGSTIDADTIVIGIGAKPTVSPF  293 (469)
Q Consensus       257 ~~~~~~~v~~v~~~~g~~i~~D~vi~a~G~~p~~~~~  293 (469)
                      +.+  .+  .+.+.+|+++.+|.+|+|+|.+++...+
T Consensus        81 d~~--~~--~v~~~~g~~i~yd~LviAtG~~~~~~~i  113 (401)
T 3vrd_B           81 DPD--KK--LVKTAGGAEFAYDRCVVAPGIDLLYDKI  113 (401)
T ss_dssp             ETT--TT--EEEETTSCEEECSEEEECCCEEECGGGS
T ss_pred             Ecc--Cc--EEEecccceeecceeeeccCCccccCCc
Confidence            853  33  4678999999999999999999875433

>4at0_A 3-ketosteroid-delta4-5alpha-dehydrogenase; oxidoreductase, dehydogenase, steroid catabolism; HET: FAD; 1.60A {Rhodococcus jostii} PDB: 4at2_A*

Probab=98.06  E-value=8.6e-06  Score=83.18  Aligned_cols=37  Identities=16%  Similarity=0.149  Sum_probs=33.5

Q ss_pred             CCCcEEEEcCcHHHHHHHHHHHHcCCCCCcEEEEcCCCCC
Q 012165           50 ENREFVIVGGGNAAGYAARTFVEHGMADGRLCIVSKEAYA   89 (469)
Q Consensus        50 ~~~~vvIIGgG~AGl~aA~~L~~~g~~~~~V~vie~~~~~   89 (469)
                      ..+||||||+|+||++||.+|++.|.   +|+|+|+.+..
T Consensus        40 ~~~DVvVVGaG~AGl~AA~~aa~~G~---~V~vlEk~~~~   76 (510)
T 4at0_A           40 YEADVVVAGYGIAGVAASIEAARAGA---DVLVLERTSGW   76 (510)
T ss_dssp             EEEEEEEECCSHHHHHHHHHHHHTTC---CEEEECSSSSS
T ss_pred             CcCCEEEECCCHHHHHHHHHHHHCCC---cEEEEeCCCCC
Confidence            45899999999999999999999987   79999998754

>4dna_A Probable glutathione reductase; structural genomics, protein structure initiative, NEW YORK structural genomix research consortium; HET: FAD; 2.80A {Sinorhizobium meliloti}

Probab=98.06  E-value=5.9e-06  Score=83.29  Aligned_cols=97  Identities=19%  Similarity=0.300  Sum_probs=74.4

Q ss_pred             CCCcEEEEcCcHHHHHHHHHHHHcCCCCCcEEEEcCCCCCCCCCCCCcccccCCCCCCCCCCCCCccccCCCCCCCCHhH
Q 012165           50 ENREFVIVGGGNAAGYAARTFVEHGMADGRLCIVSKEAYAPYERPALTKGYLFPLDKKPARLPGFHTCVGSGGERQTPEW  129 (469)
Q Consensus        50 ~~~~vvIIGgG~AGl~aA~~L~~~g~~~~~V~vie~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  129 (469)
                      ..++++|||+|+.|+.+|..|++.|.   +|++++..+...   +.+..           .+           .....+.
T Consensus       169 ~~~~v~ViGgG~~g~e~A~~l~~~g~---~Vt~v~~~~~~l---~~~~~-----------~~-----------~~~l~~~  220 (463)
T 4dna_A          169 LPESILIAGGGYIAVEFANIFHGLGV---KTTLIYRGKEIL---SRFDQ-----------DM-----------RRGLHAA  220 (463)
T ss_dssp             CCSEEEEECCSHHHHHHHHHHHHTTC---EEEEECSSSSSS---TTSCH-----------HH-----------HHHHHHH
T ss_pred             CCCeEEEECCCHHHHHHHHHHHHcCC---eEEEEEcCCccc---cccCH-----------HH-----------HHHHHHH
Confidence            36799999999999999999999886   899999876421   10000           00           1123456


Q ss_pred             HHHCCcEEEeCCcEEEEeCCC-c--EEE-eCCCeEEEeccEEeccCCCCC
Q 012165          130 YKEKGIEMIYQDPVTSIDIEK-Q--TLI-TNSGKLLKYGSLIVATGCTAS  175 (469)
Q Consensus       130 ~~~~~i~~~~~~~v~~id~~~-~--~v~-~~~g~~~~yd~lVlAtG~~~~  175 (469)
                      +++.|++++.++.|.+++.++ .  .|. +.+|+ +++|.||+|+|.+|.
T Consensus       221 l~~~Gv~i~~~~~v~~i~~~~~~~~~v~~~~~g~-i~aD~Vv~a~G~~p~  269 (463)
T 4dna_A          221 MEEKGIRILCEDIIQSVSADADGRRVATTMKHGE-IVADQVMLALGRMPN  269 (463)
T ss_dssp             HHHTTCEEECSCCEEEEEECTTSCEEEEESSSCE-EEESEEEECSCEEES
T ss_pred             HHHCCCEEECCCEEEEEEEcCCCEEEEEEcCCCe-EEeCEEEEeeCcccC
Confidence            788999999999999998753 2  677 88888 999999999998775

>1chu_A Protein (L-aspartate oxidase); flavoenzyme, NAD biosynthesis, FAD, oxidoreductase; 2.20A {Escherichia coli} SCOP: a.7.3.1 c.3.1.4 d.168.1.1 PDB: 1knr_A* 1knp_A*

Probab=98.06  E-value=1.5e-05  Score=81.88  Aligned_cols=36  Identities=19%  Similarity=0.312  Sum_probs=32.1

Q ss_pred             CCCcEEEEcCcHHHHHHHHHHHHcCCCCCcEEEEcCCCCC
Q 012165           50 ENREFVIVGGGNAAGYAARTFVEHGMADGRLCIVSKEAYA   89 (469)
Q Consensus        50 ~~~~vvIIGgG~AGl~aA~~L~~~g~~~~~V~vie~~~~~   89 (469)
                      ..+||||||||+||++||..|++ |.   +|+|+|+.+..
T Consensus         7 ~~~DVvVVG~G~AGl~aAl~la~-G~---~V~vlEk~~~~   42 (540)
T 1chu_A            7 HSCDVLIIGSGAAGLSLALRLAD-QH---QVIVLSKGPVT   42 (540)
T ss_dssp             EECSEEEECCSHHHHHHHHHHTT-TS---CEEEECSSCTT
T ss_pred             CCCCEEEECccHHHHHHHHHHhc-CC---cEEEEECCCCC
Confidence            35799999999999999999999 87   79999998653

>3h8l_A NADH oxidase; membrane protein, complete form, rossman-like fold, oxidoreductase; HET: FAD; 2.57A {Acidianus ambivalens} PDB: 3h8i_A*

Probab=98.06  E-value=9e-06  Score=80.52  Aligned_cols=79  Identities=23%  Similarity=0.424  Sum_probs=64.6

Q ss_pred             CeEEEEcCChHHHHHHHHHHh---CCCeEe-----------------------------eeHHHHHHcCcEEEcCCeEEE
Q 012165          208 KKVVVVGGGYIGMEVAAAAVG---WKLDTT-----------------------------RYEQLYQQNGVKFVKGASIKN  255 (469)
Q Consensus       208 ~~vvVvG~G~~g~e~A~~l~~---~g~~v~-----------------------------~~~~~l~~~gV~~~~~~~v~~  255 (469)
                      ++|+|||+|+.|+.+|..|++   .+.+++                             .+.+.+++.|++++.+ +++.
T Consensus         2 ~~VvIIGgG~aGl~aA~~L~~~~~~g~~V~vie~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gv~~~~~-~v~~   80 (409)
T 3h8l_A            2 TKVLVLGGRFGALTAAYTLKRLVGSKADVKVINKSRFSYFRPALPHVAIGVRDVDELKVDLSEALPEKGIQFQEG-TVEK   80 (409)
T ss_dssp             CEEEEECSSHHHHHHHHHHHHHHGGGSEEEEEESSSEEEECCSSCCCCSSCCCCCCEEEEHHHHTGGGTCEEEEC-EEEE
T ss_pred             CeEEEECCCHHHHHHHHHHHhhCCCCCeEEEEeCCCCceeccchhhcccCCcCHHHHHHHHHHHHhhCCeEEEEe-eEEE
Confidence            579999999999999999999   888887                             4567778899999988 8999


Q ss_pred             EEeCCCCcEEEEEcCCCC----EEeCCEEEEccCCccCCc
Q 012165          256 LEAGSDGRVAAVKLEDGS----TIDADTIVIGIGAKPTVS  291 (469)
Q Consensus       256 i~~~~~~~v~~v~~~~g~----~i~~D~vi~a~G~~p~~~  291 (469)
                      ++.+ +.   .|.+.+++    ++.+|.||+|+|.+|+..
T Consensus        81 i~~~-~~---~V~~~~g~~~~~~~~~d~lViAtG~~~~~~  116 (409)
T 3h8l_A           81 IDAK-SS---MVYYTKPDGSMAEEEYDYVIVGIGAHLATE  116 (409)
T ss_dssp             EETT-TT---EEEEECTTSCEEEEECSEEEECCCCEECGG
T ss_pred             EeCC-CC---EEEEccCCcccceeeCCEEEECCCCCcCcc
Confidence            9843 22   35555664    399999999999998754

>1pj5_A N,N-dimethylglycine oxidase; channelling, FAD binding, folate binding, amine oxidase, oxidoreductase; HET: FAD; 1.61A {Arthrobacter globiformis} SCOP: b.44.2.1 c.3.1.2 d.16.1.5 d.250.1.1 PDB: 1pj6_A* 1pj7_A* 3gsi_A*

Probab=98.05  E-value=4.8e-06  Score=90.23  Aligned_cols=45  Identities=16%  Similarity=0.195  Sum_probs=35.9

Q ss_pred             HHHHCCcEEEeCCcEEEEeCCCc---EEEeCCCeEEEeccEEeccCCCC
Q 012165          129 WYKEKGIEMIYQDPVTSIDIEKQ---TLITNSGKLLKYGSLIVATGCTA  174 (469)
Q Consensus       129 ~~~~~~i~~~~~~~v~~id~~~~---~v~~~~g~~~~yd~lVlAtG~~~  174 (469)
                      .+++.|++++.+++|+++..++.   .|.+.+| ++.+|+||+|+|...
T Consensus       160 ~a~~~Gv~i~~~t~V~~i~~~~~~v~~V~t~~G-~i~Ad~VV~AaG~~s  207 (830)
T 1pj5_A          160 RTESAGVTYRGSTTVTGIEQSGGRVTGVQTADG-VIPADIVVSCAGFWG  207 (830)
T ss_dssp             HHHHTTCEEECSCCEEEEEEETTEEEEEEETTE-EEECSEEEECCGGGH
T ss_pred             HHHHcCCEEECCceEEEEEEeCCEEEEEEECCc-EEECCEEEECCccch
Confidence            44677999999999999987544   3567666 699999999999753

>1trb_A Thioredoxin reductase; oxidoreductase(flavoenzyme); HET: FAD; 2.00A {Escherichia coli} SCOP: c.3.1.5 c.3.1.5 PDB: 1cl0_A* 1f6m_A* 1tdf_A* 1tde_A*

Probab=98.05  E-value=5.8e-06  Score=78.76  Aligned_cols=96  Identities=16%  Similarity=0.199  Sum_probs=71.0

Q ss_pred             CCCcEEEEcCcHHHHHHHHHHHHcCCCCCcEEEEcCCCCCCCCCCCCcccccCCCCCCCCCCCCCccccCCCCCCCCHhH
Q 012165           50 ENREFVIVGGGNAAGYAARTFVEHGMADGRLCIVSKEAYAPYERPALTKGYLFPLDKKPARLPGFHTCVGSGGERQTPEW  129 (469)
Q Consensus        50 ~~~~vvIIGgG~AGl~aA~~L~~~g~~~~~V~vie~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  129 (469)
                      ..++|+|||+|+.|+.+|..|++.+.   +|+++++.+....     ..           .+           .....+.
T Consensus       144 ~~~~v~ViG~G~~g~e~A~~l~~~g~---~Vtlv~~~~~~~~-----~~-----------~~-----------~~~l~~~  193 (320)
T 1trb_A          144 RNQKVAVIGGGNTAVEEALYLSNIAS---EVHLIHRRDGFRA-----EK-----------IL-----------IKRLMDK  193 (320)
T ss_dssp             TTSEEEEECSSHHHHHHHHHHTTTSS---EEEEECSSSSCCC-----CH-----------HH-----------HHHHHHH
T ss_pred             CCCeEEEECCCHHHHHHHHHHHhcCC---eEEEEEeCCcccc-----CH-----------HH-----------HHHHHHh
Confidence            35789999999999999999999876   8999987654210     00           00           0123345


Q ss_pred             HHHCCcEEEeCCcEEEEeCCC-c--EEEeCC----C--eEEEeccEEeccCCCCC
Q 012165          130 YKEKGIEMIYQDPVTSIDIEK-Q--TLITNS----G--KLLKYGSLIVATGCTAS  175 (469)
Q Consensus       130 ~~~~~i~~~~~~~v~~id~~~-~--~v~~~~----g--~~~~yd~lVlAtG~~~~  175 (469)
                      +++.++++++++++.+++.++ +  .|++.+    |  .++++|.+|+|+|.+|.
T Consensus       194 l~~~gv~i~~~~~v~~i~~~~~~v~~v~~~~~~~~g~~~~i~~D~vv~a~G~~p~  248 (320)
T 1trb_A          194 VENGNIILHTNRTLEEVTGDQMGVTGVRLRDTQNSDNIESLDVAGLFVAIGHSPN  248 (320)
T ss_dssp             HHTSSEEEECSCEEEEEEECSSSEEEEEEECCTTCCCCEEEECSEEEECSCEEES
T ss_pred             cccCCeEEEcCceeEEEEcCCCceEEEEEEeccCCCceEEEEcCEEEEEeCCCCC
Confidence            667899999999999998765 2  255543    4  57999999999998875

>3lad_A Dihydrolipoamide dehydrogenase; oxidoreductase; HET: FAD; 2.20A {Azotobacter vinelandii} SCOP: c.3.1.5 c.3.1.5 d.87.1.1 PDB: 1lpf_A*

Probab=98.05  E-value=6.1e-06  Score=83.53  Aligned_cols=99  Identities=15%  Similarity=0.282  Sum_probs=73.5

Q ss_pred             CCCcEEEEcCcHHHHHHHHHHHHcCCCCCcEEEEcCCCCCCCCCCCCcccccCCCCCCCCCCCCCccccCCCCCCCCHhH
Q 012165           50 ENREFVIVGGGNAAGYAARTFVEHGMADGRLCIVSKEAYAPYERPALTKGYLFPLDKKPARLPGFHTCVGSGGERQTPEW  129 (469)
Q Consensus        50 ~~~~vvIIGgG~AGl~aA~~L~~~g~~~~~V~vie~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  129 (469)
                      ..++++|||+|+.|+.+|..|++.|.   +|++++..+...   +.+..           .+           .....+.
T Consensus       179 ~~~~v~ViGgG~~g~e~A~~l~~~g~---~Vtlv~~~~~~l---~~~~~-----------~~-----------~~~l~~~  230 (476)
T 3lad_A          179 VPGKLGVIGAGVIGLELGSVWARLGA---EVTVLEAMDKFL---PAVDE-----------QV-----------AKEAQKI  230 (476)
T ss_dssp             CCSEEEEECCSHHHHHHHHHHHHTTC---EEEEEESSSSSS---TTSCH-----------HH-----------HHHHHHH
T ss_pred             CCCeEEEECCCHHHHHHHHHHHHcCC---cEEEEecCCCcC---cccCH-----------HH-----------HHHHHHH
Confidence            45799999999999999999999986   899999876421   00000           00           1223456


Q ss_pred             HHHCCcEEEeCCcEEEEeCCCc--EEEeCCC---eEEEeccEEeccCCCCCc
Q 012165          130 YKEKGIEMIYQDPVTSIDIEKQ--TLITNSG---KLLKYGSLIVATGCTASR  176 (469)
Q Consensus       130 ~~~~~i~~~~~~~v~~id~~~~--~v~~~~g---~~~~yd~lVlAtG~~~~~  176 (469)
                      +++.|++++.++++.+++.++.  .+.+.++   +++++|.+|+|+|.+|..
T Consensus       231 l~~~Gv~v~~~~~v~~i~~~~~~~~v~~~~~~g~~~~~~D~vi~a~G~~p~~  282 (476)
T 3lad_A          231 LTKQGLKILLGARVTGTEVKNKQVTVKFVDAEGEKSQAFDKLIVAVGRRPVT  282 (476)
T ss_dssp             HHHTTEEEEETCEEEEEEECSSCEEEEEESSSEEEEEEESEEEECSCEEECC
T ss_pred             HHhCCCEEEECCEEEEEEEcCCEEEEEEEeCCCcEEEECCEEEEeeCCcccC
Confidence            7889999999999999986543  4555544   579999999999988753

>1m6i_A Programmed cell death protein 8; apoptosis, AIF, oxidoreductase; HET: FAD; 1.80A {Homo sapiens} SCOP: c.3.1.5 c.3.1.5 d.87.1.1 PDB: 3gd3_A* 3gd4_A* 1gv4_A*

Probab=98.03  E-value=6.6e-06  Score=83.61  Aligned_cols=101  Identities=19%  Similarity=0.252  Sum_probs=72.7

Q ss_pred             CCcEEEEcCcHHHHHHHHHHHHcCCC-CCcEEEEcCCCCCCCCCCCCcccccCCCCCCCCCCCCCccccCCCCCCCCHhH
Q 012165           51 NREFVIVGGGNAAGYAARTFVEHGMA-DGRLCIVSKEAYAPYERPALTKGYLFPLDKKPARLPGFHTCVGSGGERQTPEW  129 (469)
Q Consensus        51 ~~~vvIIGgG~AGl~aA~~L~~~g~~-~~~V~vie~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  129 (469)
                      .++++|||||+.|+.+|..|++.+.. ..+|+++++.+... .     . .+ +     ..+           .....+.
T Consensus       180 ~~~vvViGgG~iG~E~A~~l~~~~~~~g~~V~~v~~~~~~~-~-----~-~l-~-----~~~-----------~~~~~~~  235 (493)
T 1m6i_A          180 VKSITIIGGGFLGSELACALGRKARALGTEVIQLFPEKGNM-G-----K-IL-P-----EYL-----------SNWTMEK  235 (493)
T ss_dssp             CSEEEEECCSHHHHHHHHHHHHHHHHHTCEEEEECSSSSTT-T-----T-TS-C-----HHH-----------HHHHHHH
T ss_pred             CCeEEEECCCHHHHHHHHHHHhhhhhcCCEEEEEecCcccc-c-----c-cC-C-----HHH-----------HHHHHHH
Confidence            57899999999999999999874210 23799998764310 0     0 00 0     000           0123456


Q ss_pred             HHHCCcEEEeCCcEEEEeCCCc--EEEeCCCeEEEeccEEeccCCCCC
Q 012165          130 YKEKGIEMIYQDPVTSIDIEKQ--TLITNSGKLLKYGSLIVATGCTAS  175 (469)
Q Consensus       130 ~~~~~i~~~~~~~v~~id~~~~--~v~~~~g~~~~yd~lVlAtG~~~~  175 (469)
                      +++.|++++.+++|..++.++.  .|++.+|+++++|.||+|+|.+|.
T Consensus       236 l~~~GV~v~~~~~V~~i~~~~~~~~v~l~dG~~i~aD~Vv~a~G~~pn  283 (493)
T 1m6i_A          236 VRREGVKVMPNAIVQSVGVSSGKLLIKLKDGRKVETDHIVAAVGLEPN  283 (493)
T ss_dssp             HHTTTCEEECSCCEEEEEEETTEEEEEETTSCEEEESEEEECCCEEEC
T ss_pred             HHhcCCEEEeCCEEEEEEecCCeEEEEECCCCEEECCEEEECCCCCcc
Confidence            7889999999999999975443  577889999999999999998875

>1fl2_A Alkyl hydroperoxide reductase subunit F; reactive oxygen, FAD, disulphi oxidoreductase, oxidoreductase; HET: FAD; 1.90A {Escherichia coli} SCOP: c.3.1.5 c.3.1.5

Probab=98.02  E-value=1.6e-05  Score=75.34  Aligned_cols=82  Identities=21%  Similarity=0.302  Sum_probs=66.2

Q ss_pred             eEEEEcCChHHHHHHHHHHhCCCeEe--------------------------------eeHHHHHHcCcEEEcCCeEEEE
Q 012165          209 KVVVVGGGYIGMEVAAAAVGWKLDTT--------------------------------RYEQLYQQNGVKFVKGASIKNL  256 (469)
Q Consensus       209 ~vvVvG~G~~g~e~A~~l~~~g~~v~--------------------------------~~~~~l~~~gV~~~~~~~v~~i  256 (469)
                      +|+|||+|+.|+.+|..|++.|.++.                                .+.+.+++.|++++.++++..+
T Consensus         3 dvvIIG~G~aGl~aA~~l~~~g~~v~li~~~~gG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~v~~i   82 (310)
T 1fl2_A            3 DVLIVGSGPAGAAAAIYSARKGIRTGLMGERFGGQILDTVDIENYISVPKTEGQKLAGALKVHVDEYDVDVIDSQSASKL   82 (310)
T ss_dssp             EEEEECCSHHHHHHHHHHHTTTCCEEEECSSTTGGGGGCCEECCBTTBSSEEHHHHHHHHHHHHHTSCEEEECSCCEEEE
T ss_pred             CEEEECcCHHHHHHHHHHHHCCCcEEEEeCCCCceeccccccccccCcCCCCHHHHHHHHHHHHHHcCCeEEccCEEEEE
Confidence            68999999999999999999988775                                2335566789999999999999


Q ss_pred             EeCCC-CcEEEEEcCCCCEEeCCEEEEccCCccCC
Q 012165          257 EAGSD-GRVAAVKLEDGSTIDADTIVIGIGAKPTV  290 (469)
Q Consensus       257 ~~~~~-~~v~~v~~~~g~~i~~D~vi~a~G~~p~~  290 (469)
                      +...+ +....+.+++|+++.+|.+|+|+|.+|..
T Consensus        83 ~~~~~~~~~~~v~~~~g~~~~~~~lv~AtG~~~~~  117 (310)
T 1fl2_A           83 IPAAVEGGLHQIETASGAVLKARSIIVATGAKWRN  117 (310)
T ss_dssp             ECCSSTTCCEEEEETTSCEEEEEEEEECCCEEECC
T ss_pred             EecccCCceEEEEECCCCEEEeCEEEECcCCCcCC
Confidence            75322 22335778888899999999999998764

>3cty_A Thioredoxin reductase; FAD, oxidoreductase, flavin, flavoprotein; HET: FAD; 2.35A {Thermoplasma acidophilum}

Probab=98.00  E-value=8.2e-06  Score=77.76  Aligned_cols=91  Identities=20%  Similarity=0.256  Sum_probs=69.8

Q ss_pred             CCcEEEEcCcHHHHHHHHHHHHcCCCCCcEEEEcCCCCCCCCCCCCcccccCCCCCCCCCCCCCccccCCCCCCCCHhHH
Q 012165           51 NREFVIVGGGNAAGYAARTFVEHGMADGRLCIVSKEAYAPYERPALTKGYLFPLDKKPARLPGFHTCVGSGGERQTPEWY  130 (469)
Q Consensus        51 ~~~vvIIGgG~AGl~aA~~L~~~g~~~~~V~vie~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  130 (469)
                      .++++|||+|+.|+..|..|++.+.   +|+++++.+.+..     .                          ....+.+
T Consensus       155 ~~~v~viG~G~~g~e~a~~l~~~g~---~V~~i~~~~~~~~-----~--------------------------~~l~~~l  200 (319)
T 3cty_A          155 GKRVVTIGGGNSGAIAAISMSEYVK---NVTIIEYMPKYMC-----E--------------------------NAYVQEI  200 (319)
T ss_dssp             TSEEEEECCSHHHHHHHHHHTTTBS---EEEEECSSSSCCS-----C--------------------------HHHHHHH
T ss_pred             CCeEEEECCCHHHHHHHHHHHhhCC---cEEEEEcCCccCC-----C--------------------------HHHHHHH
Confidence            4789999999999999999998875   8999987653210     0                          0123456


Q ss_pred             HHCCcEEEeCCcEEEEeCCCc---EEEeC---CCe--EEEeccEEeccCCCCC
Q 012165          131 KEKGIEMIYQDPVTSIDIEKQ---TLITN---SGK--LLKYGSLIVATGCTAS  175 (469)
Q Consensus       131 ~~~~i~~~~~~~v~~id~~~~---~v~~~---~g~--~~~yd~lVlAtG~~~~  175 (469)
                      .+.|++++.++++.+++.++.   .+.+.   +|+  ++.+|.||+|+|..|.
T Consensus       201 ~~~gv~i~~~~~v~~i~~~~~~v~~v~~~~~~~g~~~~i~~D~vi~a~G~~p~  253 (319)
T 3cty_A          201 KKRNIPYIMNAQVTEIVGDGKKVTGVKYKDRTTGEEKLIETDGVFIYVGLIPQ  253 (319)
T ss_dssp             HHTTCCEECSEEEEEEEESSSSEEEEEEEETTTCCEEEECCSEEEECCCEEEC
T ss_pred             hcCCcEEEcCCeEEEEecCCceEEEEEEEEcCCCceEEEecCEEEEeeCCccC
Confidence            688999999999999987643   45554   564  6899999999998765

>3lzw_A Ferredoxin--NADP reductase 2; ferredoxin reductase, FAD, NADPH, flavoprotein, oxidor; HET: FAD NAP; 1.80A {Bacillus subtilis} PDB: 3lzx_A*

Probab=98.00  E-value=1.6e-05  Score=75.93  Aligned_cols=82  Identities=16%  Similarity=0.253  Sum_probs=66.7

Q ss_pred             CeEEEEcCChHHHHHHHHHHhCCCeEe-------------------------------------eeHHHHHHcCcEEEcC
Q 012165          208 KKVVVVGGGYIGMEVAAAAVGWKLDTT-------------------------------------RYEQLYQQNGVKFVKG  250 (469)
Q Consensus       208 ~~vvVvG~G~~g~e~A~~l~~~g~~v~-------------------------------------~~~~~l~~~gV~~~~~  250 (469)
                      .+|+|||+|+.|+.+|..|++.|.+++                                     .+.+.+++.|++++++
T Consensus         8 ~~vvIIG~G~aGl~aA~~l~~~g~~v~lie~~~~~gG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   87 (332)
T 3lzw_A            8 YDITIIGGGPVGLFTAFYGGMRQASVKIIESLPQLGGQLSALYPEKYIYDVAGFPKIRAQELINNLKEQMAKFDQTICLE   87 (332)
T ss_dssp             EEEEEECCSHHHHHHHHHHHHTTCCEEEECSSSSSCHHHHHHCTTSEECCSTTCSSEEHHHHHHHHHHHHTTSCCEEECS
T ss_pred             ceEEEECCCHHHHHHHHHHHHCCCCEEEEEcCCCCCceehhcCCCceEeccCCCCCCCHHHHHHHHHHHHHHhCCcEEcc
Confidence            589999999999999999999998877                                     1234556679999999


Q ss_pred             CeEEEEEeCCCCcEEEEEcCCCCEEeCCEEEEccCC---ccCCc
Q 012165          251 ASIKNLEAGSDGRVAAVKLEDGSTIDADTIVIGIGA---KPTVS  291 (469)
Q Consensus       251 ~~v~~i~~~~~~~v~~v~~~~g~~i~~D~vi~a~G~---~p~~~  291 (469)
                      ++|.+++..+++. ..+.+.+|+ +.+|.||+|+|.   .|...
T Consensus        88 ~~v~~i~~~~~~~-~~v~~~~g~-~~~d~vVlAtG~~~~~p~~~  129 (332)
T 3lzw_A           88 QAVESVEKQADGV-FKLVTNEET-HYSKTVIITAGNGAFKPRKL  129 (332)
T ss_dssp             CCEEEEEECTTSC-EEEEESSEE-EEEEEEEECCTTSCCEECCC
T ss_pred             CEEEEEEECCCCc-EEEEECCCE-EEeCEEEECCCCCcCCCCCC
Confidence            9999998754433 357788885 999999999999   77543

>2zbw_A Thioredoxin reductase; redox protein, oxidoreductase, structural genomics, NPPSFA, project on protein structural and functional analyses; HET: FAD; 2.10A {Thermus thermophilus}

Probab=98.00  E-value=5.8e-06  Score=79.33  Aligned_cols=96  Identities=13%  Similarity=0.234  Sum_probs=71.7

Q ss_pred             CCCcEEEEcCcHHHHHHHHHHHHcCCCCCcEEEEcCCCCCCCCCCCCcccccCCCCCCCCCCCCCccccCCCCCCCCHhH
Q 012165           50 ENREFVIVGGGNAAGYAARTFVEHGMADGRLCIVSKEAYAPYERPALTKGYLFPLDKKPARLPGFHTCVGSGGERQTPEW  129 (469)
Q Consensus        50 ~~~~vvIIGgG~AGl~aA~~L~~~g~~~~~V~vie~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  129 (469)
                      ..++|+|||+|..|+.+|..|++.+.   +|+++++.+.+...            .    ..           .....+.
T Consensus       151 ~~~~v~viG~G~~g~e~a~~l~~~g~---~V~~v~~~~~~~~~------------~----~~-----------~~~l~~~  200 (335)
T 2zbw_A          151 QGKRVLIVGGGDSAVDWALNLLDTAR---RITLIHRRPQFRAH------------E----AS-----------VKELMKA  200 (335)
T ss_dssp             TTCEEEEECSSHHHHHHHHHTTTTSS---EEEEECSSSSCCSC------------H----HH-----------HHHHHHH
T ss_pred             CCCEEEEECCCHHHHHHHHHHHhhCC---EEEEEEcCCccCcc------------H----HH-----------HHHHHhc
Confidence            35799999999999999999998875   79999877542100            0    00           0123445


Q ss_pred             HHHCCcEEEeCCcEEEEeCCCc--EEEeC---CC--eEEEeccEEeccCCCCC
Q 012165          130 YKEKGIEMIYQDPVTSIDIEKQ--TLITN---SG--KLLKYGSLIVATGCTAS  175 (469)
Q Consensus       130 ~~~~~i~~~~~~~v~~id~~~~--~v~~~---~g--~~~~yd~lVlAtG~~~~  175 (469)
                      +++.+++++.++++..++.+++  .|++.   +|  .++++|.+|+|+|.+|.
T Consensus       201 l~~~gv~v~~~~~v~~i~~~~~~~~v~~~~~~~g~~~~i~~D~vi~a~G~~p~  253 (335)
T 2zbw_A          201 HEEGRLEVLTPYELRRVEGDERVRWAVVFHNQTQEELALEVDAVLILAGYITK  253 (335)
T ss_dssp             HHTTSSEEETTEEEEEEEESSSEEEEEEEETTTCCEEEEECSEEEECCCEEEE
T ss_pred             cccCCeEEecCCcceeEccCCCeeEEEEEECCCCceEEEecCEEEEeecCCCC
Confidence            6667999999989999987654  56665   66  57999999999998764

>3urh_A Dihydrolipoyl dehydrogenase; PSI-biology, structural genomics, protein structure initiati YORK structural genomics research consortium; HET: FAD; 1.90A {Sinorhizobium meliloti}

Probab=98.00  E-value=9.1e-06  Score=82.56  Aligned_cols=98  Identities=17%  Similarity=0.248  Sum_probs=72.2

Q ss_pred             CCCcEEEEcCcHHHHHHHHHHHHcCCCCCcEEEEcCCCCCCCCCCCCcccccCCCCCCCCCCCCCccccCCCCCCCCHhH
Q 012165           50 ENREFVIVGGGNAAGYAARTFVEHGMADGRLCIVSKEAYAPYERPALTKGYLFPLDKKPARLPGFHTCVGSGGERQTPEW  129 (469)
Q Consensus        50 ~~~~vvIIGgG~AGl~aA~~L~~~g~~~~~V~vie~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  129 (469)
                      ..++++|||||+.|+.+|..|++.|.   +|++++..+...   +.+.           ..+           .....+.
T Consensus       197 ~~~~vvViGgG~~g~E~A~~l~~~g~---~Vtlv~~~~~~l---~~~d-----------~~~-----------~~~l~~~  248 (491)
T 3urh_A          197 VPASMIVVGGGVIGLELGSVWARLGA---KVTVVEFLDTIL---GGMD-----------GEV-----------AKQLQRM  248 (491)
T ss_dssp             CCSEEEEECCSHHHHHHHHHHHHHTC---EEEEECSSSSSS---SSSC-----------HHH-----------HHHHHHH
T ss_pred             cCCeEEEECCCHHHHHHHHHHHHcCC---EEEEEecccccc---ccCC-----------HHH-----------HHHHHHH
Confidence            45799999999999999999999986   899998766421   0000           000           1123456


Q ss_pred             HHHCCcEEEeCCcEEEEeCCCc--EEEeCC---C--eEEEeccEEeccCCCCC
Q 012165          130 YKEKGIEMIYQDPVTSIDIEKQ--TLITNS---G--KLLKYGSLIVATGCTAS  175 (469)
Q Consensus       130 ~~~~~i~~~~~~~v~~id~~~~--~v~~~~---g--~~~~yd~lVlAtG~~~~  175 (469)
                      +++.|++++.++++.++..++.  .+.+.+   |  +++++|.||+|+|.+|.
T Consensus       249 l~~~gV~v~~~~~v~~i~~~~~~~~v~~~~~~~g~~~~i~~D~Vi~a~G~~p~  301 (491)
T 3urh_A          249 LTKQGIDFKLGAKVTGAVKSGDGAKVTFEPVKGGEATTLDAEVVLIATGRKPS  301 (491)
T ss_dssp             HHHTTCEEECSEEEEEEEEETTEEEEEEEETTSCCCEEEEESEEEECCCCEEC
T ss_pred             HHhCCCEEEECCeEEEEEEeCCEEEEEEEecCCCceEEEEcCEEEEeeCCccC
Confidence            7888999999999999876554  344442   4  57999999999998875

>3dgh_A TRXR-1, thioredoxin reductase 1, mitochondrial; oxidoreductase, rossmann, flavoprotein, alternative initiati mitochondrion, NADP; HET: FAD; 1.75A {Drosophila melanogaster} PDB: 2nvk_X* 3dh9_A*

Probab=97.99  E-value=5.9e-06  Score=83.80  Aligned_cols=97  Identities=13%  Similarity=0.169  Sum_probs=70.6

Q ss_pred             CCCcEEEEcCcHHHHHHHHHHHHcCCCCCcEEEEcCCCCCCCCCCCCcccccCCCCCCCCCCCCCccccCCCCCCCCHhH
Q 012165           50 ENREFVIVGGGNAAGYAARTFVEHGMADGRLCIVSKEAYAPYERPALTKGYLFPLDKKPARLPGFHTCVGSGGERQTPEW  129 (469)
Q Consensus        50 ~~~~vvIIGgG~AGl~aA~~L~~~g~~~~~V~vie~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  129 (469)
                      ..++++|||||+.|+.+|..|++.|.   +|+++++....+    .+..           .+           .....+.
T Consensus       186 ~~~~vvViGgG~~g~E~A~~l~~~g~---~Vtlv~~~~~l~----~~d~-----------~~-----------~~~l~~~  236 (483)
T 3dgh_A          186 EPGKTLVVGAGYIGLECAGFLKGLGY---EPTVMVRSIVLR----GFDQ-----------QM-----------AELVAAS  236 (483)
T ss_dssp             CCCEEEEECCSHHHHHHHHHHHHTTC---EEEEEESSCSST----TSCH-----------HH-----------HHHHHHH
T ss_pred             cCCcEEEECCCHHHHHHHHHHHHcCC---EEEEEeCCCCCc----ccCH-----------HH-----------HHHHHHH
Confidence            35789999999999999999999986   899998642211    0000           00           1123466


Q ss_pred             HHHCCcEEEeCCcEEEEeCCC---cEEEeCCCe-----EEEeccEEeccCCCCC
Q 012165          130 YKEKGIEMIYQDPVTSIDIEK---QTLITNSGK-----LLKYGSLIVATGCTAS  175 (469)
Q Consensus       130 ~~~~~i~~~~~~~v~~id~~~---~~v~~~~g~-----~~~yd~lVlAtG~~~~  175 (469)
                      +++.|++++.++.+.+++...   ..|++.++.     ++++|.||+|+|.+|.
T Consensus       237 l~~~Gv~i~~~~~v~~i~~~~~~~~~v~~~~~~~~~~~~~~~D~vi~a~G~~p~  290 (483)
T 3dgh_A          237 MEERGIPFLRKTVPLSVEKQDDGKLLVKYKNVETGEESEDVYDTVLWAIGRKGL  290 (483)
T ss_dssp             HHHTTCCEEETEEEEEEEECTTSCEEEEEEETTTCCEEEEEESEEEECSCEEEC
T ss_pred             HHhCCCEEEeCCEEEEEEEcCCCcEEEEEecCCCCceeEEEcCEEEECcccccC
Confidence            788999999999999987632   246665543     7899999999998775

>3dk9_A Grase, GR, glutathione reductase; flavoenzyme, nicotinamide, acetylation, alternative initiation, cytoplasm, FAD, flavoprotein, mitochondrion, NADP; HET: SO4 FAD; 0.95A {Homo sapiens} PDB: 1bwc_A* 1gra_A* 1gre_A* 1grf_A* 1grh_A* 1grb_A* 2gh5_A* 1gsn_A* 3dk4_A* 3dk8_A* 3djj_A* 3grs_A* 3sqp_A* 4gr1_A* 2aaq_A* 1dnc_A* 1grg_A* 1grt_A* 1xan_A* 5grt_A* ...

Probab=97.99  E-value=6.5e-06  Score=83.38  Aligned_cols=99  Identities=16%  Similarity=0.190  Sum_probs=72.4

Q ss_pred             CCCcEEEEcCcHHHHHHHHHHHHcCCCCCcEEEEcCCCCCCCCCCCCcccccCCCCCCCCCCCCCccccCCCCCCCCHhH
Q 012165           50 ENREFVIVGGGNAAGYAARTFVEHGMADGRLCIVSKEAYAPYERPALTKGYLFPLDKKPARLPGFHTCVGSGGERQTPEW  129 (469)
Q Consensus        50 ~~~~vvIIGgG~AGl~aA~~L~~~g~~~~~V~vie~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  129 (469)
                      ..++++|||||+.|+.+|..|++.|.   +|++++..+...   +.+..           .+           .....+.
T Consensus       186 ~~~~vvViGgG~~g~E~A~~l~~~g~---~Vtlv~~~~~~l---~~~d~-----------~~-----------~~~~~~~  237 (478)
T 3dk9_A          186 LPGRSVIVGAGYIAVEMAGILSALGS---KTSLMIRHDKVL---RSFDS-----------MI-----------STNCTEE  237 (478)
T ss_dssp             CCSEEEEECCSHHHHHHHHHHHHTTC---EEEEECSSSSSC---TTSCH-----------HH-----------HHHHHHH
T ss_pred             cCccEEEECCCHHHHHHHHHHHHcCC---eEEEEEeCCccc---cccCH-----------HH-----------HHHHHHH
Confidence            35799999999999999999999986   799999765421   10000           00           1123466


Q ss_pred             HHHCCcEEEeCCcEEEEeCCC----cEEEeCC-------CeEEEeccEEeccCCCCCc
Q 012165          130 YKEKGIEMIYQDPVTSIDIEK----QTLITNS-------GKLLKYGSLIVATGCTASR  176 (469)
Q Consensus       130 ~~~~~i~~~~~~~v~~id~~~----~~v~~~~-------g~~~~yd~lVlAtG~~~~~  176 (469)
                      +++.|++++.++.+.+++...    ..+.+.+       |.++++|.||+|+|.+|..
T Consensus       238 l~~~gv~i~~~~~v~~i~~~~~~~~~~v~~~~~~~g~~~g~~~~~D~vi~a~G~~p~~  295 (478)
T 3dk9_A          238 LENAGVEVLKFSQVKEVKKTLSGLEVSMVTAVPGRLPVMTMIPDVDCLLWAIGRVPNT  295 (478)
T ss_dssp             HHHTTCEEETTEEEEEEEECSSSEEEEEEECCTTSCCEEEEEEEESEEEECSCEEESC
T ss_pred             HHHCCCEEEeCCEEEEEEEcCCCcEEEEEEccCCCCcccceEEEcCEEEEeeccccCC
Confidence            788999999999999987542    2455654       2679999999999987753

>3nix_A Flavoprotein/dehydrogenase; structural genomics, PSI-2, NES protein structure initiative, northeast structural genomics consortium; HET: FAD; 2.60A {Cytophaga hutchinsonii}

Probab=97.99  E-value=1.6e-05  Score=78.96  Aligned_cols=81  Identities=17%  Similarity=0.211  Sum_probs=67.6

Q ss_pred             CeEEEEcCChHHHHHHHHHHhCCCeEe-----------------------------------------------------
Q 012165          208 KKVVVVGGGYIGMEVAAAAVGWKLDTT-----------------------------------------------------  234 (469)
Q Consensus       208 ~~vvVvG~G~~g~e~A~~l~~~g~~v~-----------------------------------------------------  234 (469)
                      .+|+|||||+.|+-+|..|++.|.+|+                                                     
T Consensus         6 ~dVvIIGgG~aGl~~A~~La~~G~~V~v~E~~~~~~~~~g~~~~~~~~~~l~~~g~~~~~~~~~~~~~~~~~~~~~~~~~   85 (421)
T 3nix_A            6 VDVLVIGAGPAGTVAASLVNKSGFKVKIVEKQKFPRFVIGESLLPRCMEHLDEAGFLDAVKAQGFQQKFGAKFVRGKEIA   85 (421)
T ss_dssp             EEEEEECCSHHHHHHHHHHHTTTCCEEEECSSCSSCCCSCCBCCGGGHHHHHHTTCHHHHHHTTCEEECEEEEEETTEEE
T ss_pred             CcEEEECCCHHHHHHHHHHHhCCCCEEEEeCCCCCCCcccCcccHhHHHHHHHcCChHHHHHcCCcccCCcEEEeCCeeE
Confidence            479999999999999999999998876                                                     


Q ss_pred             -------------------------eeHHHHHHcCcEEEcCCeEEEEEeCCCCcEEEEEcCCCC--EEeCCEEEEccCCc
Q 012165          235 -------------------------RYEQLYQQNGVKFVKGASIKNLEAGSDGRVAAVKLEDGS--TIDADTIVIGIGAK  287 (469)
Q Consensus       235 -------------------------~~~~~l~~~gV~~~~~~~v~~i~~~~~~~v~~v~~~~g~--~i~~D~vi~a~G~~  287 (469)
                                               .+.+.+++.|++++.+++|++++..+++....+.+.+|+  ++.+|.||.|+|..
T Consensus        86 ~~~~~~~~~~~~~~~~~~~r~~~~~~L~~~a~~~gv~i~~~~~v~~i~~~~~~~~v~v~~~~g~~~~~~a~~vV~A~G~~  165 (421)
T 3nix_A           86 DFNFSDQFSNGWNWTWQVPRGNFDKTLADEAARQGVDVEYEVGVTDIKFFGTDSVTTIEDINGNKREIEARFIIDASGYG  165 (421)
T ss_dssp             EEETTSCSSCSCCCEEECCHHHHHHHHHHHHHHHTCEEECSEEEEEEEEETTEEEEEEEETTSCEEEEEEEEEEECCGGG
T ss_pred             EEeehhhcCCCCCceeEECHHHHHHHHHHHHHhCCCEEEcCCEEEEEEEeCCEEEEEEEcCCCCEEEEEcCEEEECCCCc
Confidence                                     133455567999999999999987655555567778887  79999999999987


Q ss_pred             c
Q 012165          288 P  288 (469)
Q Consensus       288 p  288 (469)
                      .
T Consensus       166 s  166 (421)
T 3nix_A          166 R  166 (421)
T ss_dssp             C
T ss_pred             h
Confidence            6

>4ap3_A Steroid monooxygenase; oxidoreductase, baeyer-villiger; HET: FAD NAP; 2.39A {Rhodococcus rhodochrous} PDB: 4aox_A* 4aos_A* 4ap1_A*

Probab=97.98  E-value=6.7e-05  Score=77.10  Aligned_cols=85  Identities=18%  Similarity=0.257  Sum_probs=68.3

Q ss_pred             CCeEEEEcCChHHHHHHHHHHhCCCeEe----------------------------------------------------
Q 012165          207 AKKVVVVGGGYIGMEVAAAAVGWKLDTT----------------------------------------------------  234 (469)
Q Consensus       207 ~~~vvVvG~G~~g~e~A~~l~~~g~~v~----------------------------------------------------  234 (469)
                      ..+|+|||+|+.|+.+|..|.+.|.+++                                                    
T Consensus        21 ~~dVvIIGaG~aGl~aA~~L~~~G~~v~iiE~~~~~GGtw~~~~ypg~~~dv~s~~y~~~f~~~~~~~~~~~~~~~~~~e  100 (549)
T 4ap3_A           21 SYDVVVVGAGIAGLYAIHRFRSQGLTVRAFEAASGVGGVWYWNRYPGARCDVESIDYSYSFSPELEQEWNWSEKYATQPE  100 (549)
T ss_dssp             EEEEEEECCSHHHHHHHHHHHHTTCCEEEECSSSSSCTHHHHCCCTTCBCSSCTTTSSCCSCHHHHHHCCCSSSSCBHHH
T ss_pred             CCCEEEECchHHHHHHHHHHHhCCCCEEEEeCCCCCCCccccCCCCCceeCCCchhcccccccccccCCCCccCCCCHHH
Confidence            3589999999999999999999988776                                                    


Q ss_pred             ---eeHHHHHHcCc--EEEcCCeEEEEEeCCCCcEEEEEcCCCCEEeCCEEEEccC--CccCCc
Q 012165          235 ---RYEQLYQQNGV--KFVKGASIKNLEAGSDGRVAAVKLEDGSTIDADTIVIGIG--AKPTVS  291 (469)
Q Consensus       235 ---~~~~~l~~~gV--~~~~~~~v~~i~~~~~~~v~~v~~~~g~~i~~D~vi~a~G--~~p~~~  291 (469)
                         .+.+..++.|+  +++++++|++++.+++.....|.+++|+++.+|.||+|+|  .+|...
T Consensus       101 i~~yl~~~~~~~g~~~~i~~~~~V~~i~~~~~~~~w~V~~~~G~~i~ad~lV~AtG~~s~p~~p  164 (549)
T 4ap3_A          101 ILAYLEHVADRFDLRRDIRFDTRVTSAVLDEEGLRWTVRTDRGDEVSARFLVVAAGPLSNANTP  164 (549)
T ss_dssp             HHHHHHHHHHHTTCGGGEECSCCEEEEEEETTTTEEEEEETTCCEEEEEEEEECCCSEEECCCC
T ss_pred             HHHHHHHHHHHcCCCccEEECCEEEEEEEcCCCCEEEEEECCCCEEEeCEEEECcCCCCCCCCC
Confidence               11234566787  7899999999987655545578889999999999999999  556543

>3fbs_A Oxidoreductase; structural genomics, PSI2, MCSG, protein STR initiative, midwest center for structural genomics; HET: FAD; 2.15A {Agrobacterium tumefaciens}

Probab=97.98  E-value=1.5e-05  Score=74.83  Aligned_cols=81  Identities=15%  Similarity=0.353  Sum_probs=64.5

Q ss_pred             CeEEEEcCChHHHHHHHHHHhCCCeEe-------------------------------eeHHHHHHc-CcEEEcCCeEEE
Q 012165          208 KKVVVVGGGYIGMEVAAAAVGWKLDTT-------------------------------RYEQLYQQN-GVKFVKGASIKN  255 (469)
Q Consensus       208 ~~vvVvG~G~~g~e~A~~l~~~g~~v~-------------------------------~~~~~l~~~-gV~~~~~~~v~~  255 (469)
                      .+|+|||+|+.|+.+|..|++.|.+++                               .+.+.+++. +++++.+ +++.
T Consensus         3 ~~vvIIG~G~aGl~aA~~l~~~g~~v~lie~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~-~v~~   81 (297)
T 3fbs_A            3 FDVIIIGGSYAGLSAALQLGRARKNILLVDAGERRNRFASHSHGFLGQDGKAPGEIIAEARRQIERYPTIHWVEG-RVTD   81 (297)
T ss_dssp             EEEEEECCSHHHHHHHHHHHHTTCCEEEEECCCCGGGGCSCCCSSTTCTTCCHHHHHHHHHHHHTTCTTEEEEES-CEEE
T ss_pred             CCEEEECCCHHHHHHHHHHHhCCCCEEEEeCCCcccccchhhcCCcCCCCCCHHHHHHHHHHHHHhcCCeEEEEe-EEEE
Confidence            479999999999999999999998886                               233444454 7888765 7999


Q ss_pred             EEeCCCCcEEEEEcCCCCEEeCCEEEEccCCccCCc
Q 012165          256 LEAGSDGRVAAVKLEDGSTIDADTIVIGIGAKPTVS  291 (469)
Q Consensus       256 i~~~~~~~v~~v~~~~g~~i~~D~vi~a~G~~p~~~  291 (469)
                      ++..+++  ..+.+.+|+++.+|.+|+|+|.+|...
T Consensus        82 i~~~~~~--~~v~~~~g~~~~~d~vviAtG~~~~~~  115 (297)
T 3fbs_A           82 AKGSFGE--FIVEIDGGRRETAGRLILAMGVTDELP  115 (297)
T ss_dssp             EEEETTE--EEEEETTSCEEEEEEEEECCCCEEECC
T ss_pred             EEEcCCe--EEEEECCCCEEEcCEEEECCCCCCCCC
Confidence            9865333  357888998999999999999987643

>2q7v_A Thioredoxin reductase; rossman fold, FAD, flavoprotein, oxidoreductase, redox- active center; HET: FAD; 1.90A {Deinococcus radiodurans}

Probab=97.98  E-value=8.7e-06  Score=77.82  Aligned_cols=91  Identities=13%  Similarity=0.252  Sum_probs=68.4

Q ss_pred             CCcEEEEcCcHHHHHHHHHHHHcCCCCCcEEEEcCCCCCCCCCCCCcccccCCCCCCCCCCCCCccccCCCCCCCCHhHH
Q 012165           51 NREFVIVGGGNAAGYAARTFVEHGMADGRLCIVSKEAYAPYERPALTKGYLFPLDKKPARLPGFHTCVGSGGERQTPEWY  130 (469)
Q Consensus        51 ~~~vvIIGgG~AGl~aA~~L~~~g~~~~~V~vie~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  130 (469)
                      .++++|||+|..|+.+|..|++.+.   +|+++++.+.+..     .                          ....+.+
T Consensus       152 ~~~v~VvG~G~~g~e~A~~l~~~g~---~Vtlv~~~~~~~~-----~--------------------------~~~~~~l  197 (325)
T 2q7v_A          152 GKKVVVIGGGDAAVEEGMFLTKFAD---EVTVIHRRDTLRA-----N--------------------------KVAQARA  197 (325)
T ss_dssp             TCEEEEECCSHHHHHHHHHHTTTCS---EEEEECSSSSCCS-----C--------------------------HHHHHHH
T ss_pred             CCEEEEECCCHHHHHHHHHHHhcCC---EEEEEeCCCcCCc-----c--------------------------hHHHHHH
Confidence            4789999999999999999998875   8999987654210     0                          0112223


Q ss_pred             -HHCCcEEEeCCcEEEEeCCCc--EEEeC---CCe--EEEeccEEeccCCCCC
Q 012165          131 -KEKGIEMIYQDPVTSIDIEKQ--TLITN---SGK--LLKYGSLIVATGCTAS  175 (469)
Q Consensus       131 -~~~~i~~~~~~~v~~id~~~~--~v~~~---~g~--~~~yd~lVlAtG~~~~  175 (469)
                       ++.+++++.++++..++.+++  .|.+.   +|+  ++++|.||+|+|.+|.
T Consensus       198 ~~~~gv~i~~~~~v~~i~~~~~v~~v~~~~~~~g~~~~i~~D~vi~a~G~~p~  250 (325)
T 2q7v_A          198 FANPKMKFIWDTAVEEIQGADSVSGVKLRNLKTGEVSELATDGVFIFIGHVPN  250 (325)
T ss_dssp             HTCTTEEEECSEEEEEEEESSSEEEEEEEETTTCCEEEEECSEEEECSCEEES
T ss_pred             HhcCCceEecCCceEEEccCCcEEEEEEEECCCCcEEEEEcCEEEEccCCCCC
Confidence             346999999999999987643  45554   564  6899999999998775

>3oz2_A Digeranylgeranylglycerophospholipid reductase; structural genomics, joint center for structural genomics; HET: MSE FAD OZ2; 1.60A {Thermoplasma acidophilum}

Probab=97.97  E-value=3.9e-05  Score=75.04  Aligned_cols=79  Identities=24%  Similarity=0.342  Sum_probs=61.7

Q ss_pred             eEEEEcCChHHHHHHHHHHhCCCeEe------------------------------------------------------
Q 012165          209 KVVVVGGGYIGMEVAAAAVGWKLDTT------------------------------------------------------  234 (469)
Q Consensus       209 ~vvVvG~G~~g~e~A~~l~~~g~~v~------------------------------------------------------  234 (469)
                      .|+|||+|+.|+-+|..|++.|.+|.                                                      
T Consensus         6 DViIVGaGpaGl~~A~~La~~G~~V~v~Er~~~~~~~~~~g~~l~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~   85 (397)
T 3oz2_A            6 DVLVVGGGPGGSTAARYAAKYGLKTLMIEKRPEIGSPVRCGEGLSKGILNEADIKADRSFIANEVKGARIYGPSEKRPII   85 (397)
T ss_dssp             EEEEECCSHHHHHHHHHHHHTTCCEEEECSSSSTTCSCCSCCEEETHHHHHTTCCCCTTTEEEEESEEEEECTTCSSCEE
T ss_pred             CEEEECcCHHHHHHHHHHHHCCCcEEEEeCCCCCCCCCceecccCHHHHHHcCCCchhhhhhcccceEEEEeCCCceEee
Confidence            58999999999999999999998886                                                      


Q ss_pred             ---------------------eeHHHHHHcCcEEEcCCeEEEEEeCCCCcEEEEEcC-CC--CEEeCCEEEEccCCcc
Q 012165          235 ---------------------RYEQLYQQNGVKFVKGASIKNLEAGSDGRVAAVKLE-DG--STIDADTIVIGIGAKP  288 (469)
Q Consensus       235 ---------------------~~~~~l~~~gV~~~~~~~v~~i~~~~~~~v~~v~~~-~g--~~i~~D~vi~a~G~~p  288 (469)
                                           .+.+..++.|++++.++.+..+..+ ++.+..+... ++  .++.+|+||-|.|...
T Consensus        86 ~~~~~~~~~~~~~i~R~~~~~~L~~~a~~~G~~~~~~~~v~~~~~~-~~~~~~v~~~~~~~~~~~~a~~vIgAdG~~S  162 (397)
T 3oz2_A           86 LQSEKAGNEVGYVLERDKFDKHLAALAAKAGADVWVKSPALGVIKE-NGKVAGAKIRHNNEIVDVRAKMVIAADGFES  162 (397)
T ss_dssp             EECSSSSCCCEEEECHHHHHHHHHHHHHHHTCEEESSCCEEEEEEE-TTEEEEEEEEETTEEEEEEEEEEEECCCTTC
T ss_pred             ccccccCCceeEEEEHHHHHHHHHHHHHhcCcEEeeeeeeeeeeec-cceeeeeeecccccceEEEEeEEEeCCcccc
Confidence                                 3345566789999999999998754 4554444432 33  3688999999999653

>3itj_A Thioredoxin reductase 1; disulfide B flavoprotein, NADP, oxidoreductase, phosphoprotein, redox-A center; HET: FAD CIT; 2.40A {Saccharomyces cerevisiae} PDB: 3d8x_A*

Probab=97.97  E-value=1.1e-05  Score=77.19  Aligned_cols=92  Identities=17%  Similarity=0.287  Sum_probs=69.9

Q ss_pred             CCCcEEEEcCcHHHHHHHHHHHHcCCCCCcEEEEcCCCCCCCCCCCCcccccCCCCCCCCCCCCCccccCCCCCCCCHhH
Q 012165           50 ENREFVIVGGGNAAGYAARTFVEHGMADGRLCIVSKEAYAPYERPALTKGYLFPLDKKPARLPGFHTCVGSGGERQTPEW  129 (469)
Q Consensus        50 ~~~~vvIIGgG~AGl~aA~~L~~~g~~~~~V~vie~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  129 (469)
                      ..++++|||+|+.|+.+|..|++.+.   +|+++++.+....                 .              ....+.
T Consensus       172 ~~~~v~vvG~G~~g~e~a~~l~~~g~---~v~~v~~~~~~~~-----------------~--------------~~~~~~  217 (338)
T 3itj_A          172 RNKPLAVIGGGDSACEEAQFLTKYGS---KVFMLVRKDHLRA-----------------S--------------TIMQKR  217 (338)
T ss_dssp             TTSEEEEECSSHHHHHHHHHHTTTSS---EEEEECSSSSCCS-----------------C--------------HHHHHH
T ss_pred             CCCEEEEECCCHHHHHHHHHHHhcCC---EEEEEEcCCccCC-----------------C--------------HHHHHH
Confidence            45789999999999999999999875   7999987654210                 0              112344


Q ss_pred             HHHC-CcEEEeCCcEEEEeCCCc---EEEeCC-----CeEEEeccEEeccCCCCC
Q 012165          130 YKEK-GIEMIYQDPVTSIDIEKQ---TLITNS-----GKLLKYGSLIVATGCTAS  175 (469)
Q Consensus       130 ~~~~-~i~~~~~~~v~~id~~~~---~v~~~~-----g~~~~yd~lVlAtG~~~~  175 (469)
                      +.+. |++++.++.+..++.++.   .|++.+     +.++++|.+|+|+|..|.
T Consensus       218 l~~~~gv~i~~~~~v~~i~~~~~~~~~v~~~~~~~g~~~~i~~D~vi~a~G~~p~  272 (338)
T 3itj_A          218 AEKNEKIEILYNTVALEAKGDGKLLNALRIKNTKKNEETDLPVSGLFYAIGHTPA  272 (338)
T ss_dssp             HHHCTTEEEECSEEEEEEEESSSSEEEEEEEETTTTEEEEEECSEEEECSCEEEC
T ss_pred             HHhcCCeEEeecceeEEEEcccCcEEEEEEEECCCCceEEEEeCEEEEEeCCCCC
Confidence            4454 999999999999987664   355554     457999999999998775

>3dgz_A Thioredoxin reductase 2; oxidoreductase, rossmann, flavoprotein, FAD, mitochondrion, redox-active center, selenium, selenocysteine, transit PEPT; HET: FAD NA7; 2.25A {Mus musculus} PDB: 1zkq_A* 1zdl_A*

Probab=97.96  E-value=1.1e-05  Score=81.88  Aligned_cols=97  Identities=12%  Similarity=0.157  Sum_probs=69.6

Q ss_pred             CCCcEEEEcCcHHHHHHHHHHHHcCCCCCcEEEEcCCCCCCCCCCCCcccccCCCCCCCCCCCCCccccCCCCCCCCHhH
Q 012165           50 ENREFVIVGGGNAAGYAARTFVEHGMADGRLCIVSKEAYAPYERPALTKGYLFPLDKKPARLPGFHTCVGSGGERQTPEW  129 (469)
Q Consensus        50 ~~~~vvIIGgG~AGl~aA~~L~~~g~~~~~V~vie~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  129 (469)
                      ..++++|||||+.|+.+|..|++.|.   +|+++++....    +.+..           .+           .....+.
T Consensus       184 ~~~~vvViGgG~ig~E~A~~l~~~g~---~Vtlv~~~~~l----~~~d~-----------~~-----------~~~l~~~  234 (488)
T 3dgz_A          184 SPGKTLVVGASYVALECAGFLTGIGL---DTTVMMRSIPL----RGFDQ-----------QM-----------SSLVTEH  234 (488)
T ss_dssp             CCCSEEEECCSHHHHHHHHHHHHTTC---CEEEEESSCSS----TTSCH-----------HH-----------HHHHHHH
T ss_pred             cCCeEEEECCCHHHHHHHHHHHHcCC---ceEEEEcCccc----ccCCH-----------HH-----------HHHHHHH
Confidence            35689999999999999999999986   79999865321    10000           00           1123566


Q ss_pred             HHHCCcEEEeCCcEEEEeCC-C--cEEEeCC---Ce--EEEeccEEeccCCCCC
Q 012165          130 YKEKGIEMIYQDPVTSIDIE-K--QTLITNS---GK--LLKYGSLIVATGCTAS  175 (469)
Q Consensus       130 ~~~~~i~~~~~~~v~~id~~-~--~~v~~~~---g~--~~~yd~lVlAtG~~~~  175 (469)
                      +++.|++++.++.+..+... +  ..+++.+   |+  ++++|.||+|+|.+|.
T Consensus       235 l~~~gv~~~~~~~v~~i~~~~~~~~~v~~~~~~~g~~~~~~~D~vi~a~G~~p~  288 (488)
T 3dgz_A          235 MESHGTQFLKGCVPSHIKKLPTNQLQVTWEDHASGKEDTGTFDTVLWAIGRVPE  288 (488)
T ss_dssp             HHHTTCEEEETEEEEEEEECTTSCEEEEEEETTTTEEEEEEESEEEECSCEEES
T ss_pred             HHHCCCEEEeCCEEEEEEEcCCCcEEEEEEeCCCCeeEEEECCEEEEcccCCcc
Confidence            78899999999888888652 2  2455543   54  4789999999998775

>3kd9_A Coenzyme A disulfide reductase; PSI-II, NYSGXRC, oxidoreductase, structural genomics structure initiative; 2.75A {Pyrococcus horikoshii}

Probab=97.96  E-value=9.3e-06  Score=81.51  Aligned_cols=98  Identities=19%  Similarity=0.271  Sum_probs=70.9

Q ss_pred             CCCcEEEEcCcHHHHHHHHHHHHcCCCCCcEEEEcCCCCCCCCCCCCcccccCCCCCCCCCCCCCccccCCCCCCCCHhH
Q 012165           50 ENREFVIVGGGNAAGYAARTFVEHGMADGRLCIVSKEAYAPYERPALTKGYLFPLDKKPARLPGFHTCVGSGGERQTPEW  129 (469)
Q Consensus        50 ~~~~vvIIGgG~AGl~aA~~L~~~g~~~~~V~vie~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  129 (469)
                      ..++++|||||+.|+.+|..|++.|.   +|+++++.+...   +.    .+   +   ..+           .....+.
T Consensus       147 ~~~~vvViGgG~~g~E~A~~l~~~g~---~Vtlv~~~~~~l---~~----~~---~---~~~-----------~~~l~~~  199 (449)
T 3kd9_A          147 KVENVVIIGGGYIGIEMAEAFAAQGK---NVTMIVRGERVL---RR----SF---D---KEV-----------TDILEEK  199 (449)
T ss_dssp             CCCEEEEECCSHHHHHHHHHHHHTTC---EEEEEESSSSTT---TT----TS---C---HHH-----------HHHHHHH
T ss_pred             CCCeEEEECCCHHHHHHHHHHHhCCC---eEEEEEcCCccc---hh----hc---C---HHH-----------HHHHHHH
Confidence            45799999999999999999999986   899999876421   00    00   0   000           0123445


Q ss_pred             HHHCCcEEEeCCcEEEEeCCCc-EEEeCCCeEEEeccEEeccCCCCC
Q 012165          130 YKEKGIEMIYQDPVTSIDIEKQ-TLITNSGKLLKYGSLIVATGCTAS  175 (469)
Q Consensus       130 ~~~~~i~~~~~~~v~~id~~~~-~v~~~~g~~~~yd~lVlAtG~~~~  175 (469)
                      +++. ++++.++.+..++.+++ .....++.++++|.||+|+|.+|.
T Consensus       200 l~~~-v~i~~~~~v~~i~~~~~v~~v~~~g~~i~~D~Vv~a~G~~p~  245 (449)
T 3kd9_A          200 LKKH-VNLRLQEITMKIEGEERVEKVVTDAGEYKAELVILATGIKPN  245 (449)
T ss_dssp             HTTT-SEEEESCCEEEEECSSSCCEEEETTEEEECSEEEECSCEEEC
T ss_pred             HHhC-cEEEeCCeEEEEeccCcEEEEEeCCCEEECCEEEEeeCCccC
Confidence            6667 99999999999987653 233456778999999999998765

>3r9u_A Thioredoxin reductase; structural genomics, center for structural genomics of infec diseases, csgid, thioredoxin-disulfide reductase, FAD; HET: FAD; 2.36A {Campylobacter jejuni}

Probab=97.95  E-value=1.1e-05  Score=76.34  Aligned_cols=93  Identities=17%  Similarity=0.234  Sum_probs=70.5

Q ss_pred             CCCcEEEEcCcHHHHHHHHHHHHcCCCCCcEEEEcCCCCCCCCCCCCcccccCCCCCCCCCCCCCccccCCCCCCCCHhH
Q 012165           50 ENREFVIVGGGNAAGYAARTFVEHGMADGRLCIVSKEAYAPYERPALTKGYLFPLDKKPARLPGFHTCVGSGGERQTPEW  129 (469)
Q Consensus        50 ~~~~vvIIGgG~AGl~aA~~L~~~g~~~~~V~vie~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  129 (469)
                      ..++++|||+|+.|+.+|..|++.+.   +|+++++.+.+...                .              ......
T Consensus       146 ~~~~v~viG~g~~~~e~a~~l~~~g~---~v~~~~~~~~~~~~----------------~--------------~~~~~~  192 (315)
T 3r9u_A          146 KNKEVAVLGGGDTALEEALYLANICS---KIYLIHRRDEFRAA----------------P--------------STVEKV  192 (315)
T ss_dssp             TTSEEEEECCBHHHHHHHHHHHTTSS---EEEEECSSSSCBSC----------------H--------------HHHHHH
T ss_pred             CcCEEEEECCCHHHHHHHHHHHhhCC---EEEEEEeCCCCCCC----------------H--------------HHHHHH
Confidence            35789999999999999999999875   79999876542100                0              012344


Q ss_pred             HHHCCcEEEeCCcEEEEeCCCc---EEEeC--CCe--EEEeccEEeccCCCCC
Q 012165          130 YKEKGIEMIYQDPVTSIDIEKQ---TLITN--SGK--LLKYGSLIVATGCTAS  175 (469)
Q Consensus       130 ~~~~~i~~~~~~~v~~id~~~~---~v~~~--~g~--~~~yd~lVlAtG~~~~  175 (469)
                      +++.|++++.++.+.+++.++.   .|++.  +|+  ++++|.+|+|+|..|.
T Consensus       193 ~~~~gv~~~~~~~v~~i~~~~~~~~~v~~~~~~g~~~~~~~D~vv~a~G~~p~  245 (315)
T 3r9u_A          193 KKNEKIELITSASVDEVYGDKMGVAGVKVKLKDGSIRDLNVPGIFTFVGLNVR  245 (315)
T ss_dssp             HHCTTEEEECSCEEEEEEEETTEEEEEEEECTTSCEEEECCSCEEECSCEEEC
T ss_pred             HhcCCeEEEeCcEEEEEEcCCCcEEEEEEEcCCCCeEEeecCeEEEEEcCCCC
Confidence            5678999999999999987662   34444  775  7999999999998775

>2a87_A TRXR, TR, thioredoxin reductase; FAD, NAP, NMA, TLS, oxidoreduct structural genomics, PSI, protein structure initiative; HET: FAD NAP; 3.00A {Mycobacterium tuberculosis}

Probab=97.95  E-value=1.9e-05  Score=75.89  Aligned_cols=92  Identities=16%  Similarity=0.265  Sum_probs=69.8

Q ss_pred             CCCcEEEEcCcHHHHHHHHHHHHcCCCCCcEEEEcCCCCCCCCCCCCcccccCCCCCCCCCCCCCccccCCCCCCCCH-h
Q 012165           50 ENREFVIVGGGNAAGYAARTFVEHGMADGRLCIVSKEAYAPYERPALTKGYLFPLDKKPARLPGFHTCVGSGGERQTP-E  128 (469)
Q Consensus        50 ~~~~vvIIGgG~AGl~aA~~L~~~g~~~~~V~vie~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~  128 (469)
                      ..++|+|||+|..|+.+|..|++.+.   +|+++++.+.+..                 .              .... .
T Consensus       154 ~~~~v~ViG~G~~g~e~a~~l~~~g~---~V~l~~~~~~~~~-----------------~--------------~~~~~~  199 (335)
T 2a87_A          154 RDQDIAVIGGGDSAMEEATFLTRFAR---SVTLVHRRDEFRA-----------------S--------------KIMLDR  199 (335)
T ss_dssp             TTCEEEEECSSHHHHHHHHHHTTTCS---EEEEECSSSSCSS-----------------C--------------TTHHHH
T ss_pred             CCCEEEEECCCHHHHHHHHHHHHhCC---eEEEEEcCCcCCc-----------------c--------------HHHHHH
Confidence            35799999999999999999998875   8999987653210                 0              0112 3


Q ss_pred             HHHHCCcEEEeCCcEEEEeCCCc--EEEeC---CC--eEEEeccEEeccCCCCC
Q 012165          129 WYKEKGIEMIYQDPVTSIDIEKQ--TLITN---SG--KLLKYGSLIVATGCTAS  175 (469)
Q Consensus       129 ~~~~~~i~~~~~~~v~~id~~~~--~v~~~---~g--~~~~yd~lVlAtG~~~~  175 (469)
                      .+++.+|+++.++++.+++.+++  .+.+.   +|  +++++|.||+|+|.+|.
T Consensus       200 ~~~~~gV~v~~~~~v~~i~~~~~~~~v~~~~~~~g~~~~i~~D~vi~a~G~~p~  253 (335)
T 2a87_A          200 ARNNDKIRFLTNHTVVAVDGDTTVTGLRVRDTNTGAETTLPVTGVFVAIGHEPR  253 (335)
T ss_dssp             HHHCTTEEEECSEEEEEEECSSSCCEEEEEEETTSCCEEECCSCEEECSCEEEC
T ss_pred             HhccCCcEEEeCceeEEEecCCcEeEEEEEEcCCCceEEeecCEEEEccCCccC
Confidence            45678999999999999987653  35543   34  57999999999998875

>2q0l_A TRXR, thioredoxin reductase; bacterial thiredoxin reductase, NADP+ B reduced izoalloxazine bending, oxidoreductase; HET: FAD NAP; 1.45A {Helicobacter pylori} PDB: 2q0k_A* 3ish_A*

Probab=97.95  E-value=1.4e-05  Score=75.75  Aligned_cols=92  Identities=18%  Similarity=0.232  Sum_probs=68.6

Q ss_pred             CCCcEEEEcCcHHHHHHHHHHHHcCCCCCcEEEEcCCCCCCCCCCCCcccccCCCCCCCCCCCCCccccCCCCCCCCHhH
Q 012165           50 ENREFVIVGGGNAAGYAARTFVEHGMADGRLCIVSKEAYAPYERPALTKGYLFPLDKKPARLPGFHTCVGSGGERQTPEW  129 (469)
Q Consensus        50 ~~~~vvIIGgG~AGl~aA~~L~~~g~~~~~V~vie~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  129 (469)
                      ..++|+|||+|+.|+.+|..|++.|.   +|+++++.+.+..     .                          ....+.
T Consensus       142 ~~~~v~VvG~G~~g~e~A~~l~~~g~---~Vtlv~~~~~~~~-----~--------------------------~~~~~~  187 (311)
T 2q0l_A          142 KNKEVAVLGGGDTAVEEAIYLANICK---KVYLIHRRDGFRC-----A--------------------------PITLEH  187 (311)
T ss_dssp             TTSEEEEECCSHHHHHHHHHHHTTSS---EEEEECSSSSCCS-----C--------------------------HHHHHH
T ss_pred             CCCEEEEECCCHHHHHHHHHHHhcCC---EEEEEeeCCccCC-----C--------------------------HHHHHH
Confidence            35799999999999999999999875   8999987654210     0                          011233


Q ss_pred             HH-HCCcEEEeCCcEEEEeCC-Cc--EEEeC---CCe--EEEeccEEeccCCCCC
Q 012165          130 YK-EKGIEMIYQDPVTSIDIE-KQ--TLITN---SGK--LLKYGSLIVATGCTAS  175 (469)
Q Consensus       130 ~~-~~~i~~~~~~~v~~id~~-~~--~v~~~---~g~--~~~yd~lVlAtG~~~~  175 (469)
                      +. +.+++++.++.+.+++.+ ++  .|.+.   +|+  ++++|.||+|+|..|.
T Consensus       188 l~~~~gv~v~~~~~v~~i~~~~~~v~~v~~~~~~~g~~~~i~~D~vi~a~G~~p~  242 (311)
T 2q0l_A          188 AKNNDKIEFLTPYVVEEIKGDASGVSSLSIKNTATNEKRELVVPGFFIFVGYDVN  242 (311)
T ss_dssp             HHTCTTEEEETTEEEEEEEEETTEEEEEEEEETTTCCEEEEECSEEEECSCEEEC
T ss_pred             HhhCCCeEEEeCCEEEEEECCCCcEeEEEEEecCCCceEEEecCEEEEEecCccC
Confidence            33 479999999899999865 32  35554   565  6899999999998875

>1vdc_A NTR, NADPH dependent thioredoxin reductase; hypothetical protein, redox-active center, oxidoreductase, D oxidoreductase; HET: FAD; 2.50A {Arabidopsis thaliana} SCOP: c.3.1.5 c.3.1.5 PDB: 2whd_A*

Probab=97.91  E-value=1.5e-05  Score=76.45  Aligned_cols=92  Identities=20%  Similarity=0.307  Sum_probs=69.5

Q ss_pred             CCCcEEEEcCcHHHHHHHHHHHHcCCCCCcEEEEcCCCCCCCCCCCCcccccCCCCCCCCCCCCCccccCCCCCCCC-Hh
Q 012165           50 ENREFVIVGGGNAAGYAARTFVEHGMADGRLCIVSKEAYAPYERPALTKGYLFPLDKKPARLPGFHTCVGSGGERQT-PE  128 (469)
Q Consensus        50 ~~~~vvIIGgG~AGl~aA~~L~~~g~~~~~V~vie~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~  128 (469)
                      ..++|+|||+|..|+.+|..|++.+.   +|+++++.+.+..     +                          ... .+
T Consensus       158 ~~~~v~VvG~G~~g~e~A~~l~~~g~---~V~lv~~~~~~~~-----~--------------------------~~~~~~  203 (333)
T 1vdc_A          158 RNKPLAVIGGGDSAMEEANFLTKYGS---KVYIIHRRDAFRA-----S--------------------------KIMQQR  203 (333)
T ss_dssp             TTSEEEEECCSHHHHHHHHHHTTTSS---EEEEECSSSSCCS-----C--------------------------HHHHHH
T ss_pred             CCCeEEEECCChHHHHHHHHHHhcCC---eEEEEecCCcCCc-----c--------------------------HHHHHH
Confidence            45789999999999999999998875   8999987754210     0                          011 13


Q ss_pred             HHHHCCcEEEeCCcEEEEeCCC---c--EEEeC---CC--eEEEeccEEeccCCCCC
Q 012165          129 WYKEKGIEMIYQDPVTSIDIEK---Q--TLITN---SG--KLLKYGSLIVATGCTAS  175 (469)
Q Consensus       129 ~~~~~~i~~~~~~~v~~id~~~---~--~v~~~---~g--~~~~yd~lVlAtG~~~~  175 (469)
                      .+++.+++++.++++..++.+.   +  .|.+.   +|  .++++|.||+|+|.+|.
T Consensus       204 ~~~~~gv~i~~~~~v~~i~~~~~~~~v~~v~~~~~~~g~~~~i~~D~vi~a~G~~p~  260 (333)
T 1vdc_A          204 ALSNPKIDVIWNSSVVEAYGDGERDVLGGLKVKNVVTGDVSDLKVSGLFFAIGHEPA  260 (333)
T ss_dssp             HHTCTTEEEECSEEEEEEEESSSSSSEEEEEEEETTTCCEEEEECSEEEECSCEEES
T ss_pred             HHhCCCeeEecCCceEEEeCCCCccceeeEEEEecCCCceEEEecCEEEEEeCCccc
Confidence            3456899999999999998765   2  25554   34  57999999999998875

>3ab1_A Ferredoxin--NADP reductase; oxidoreductase, electron transport, FAD, flavoprotein; HET: FAD; 2.39A {Chlorobaculum tepidum}

Probab=97.91  E-value=5.3e-05  Score=73.45  Aligned_cols=80  Identities=14%  Similarity=0.231  Sum_probs=65.4

Q ss_pred             CCeEEEEcCChHHHHHHHHHHhCCCeEe-------------------------------------eeHHHHHHcCcEEEc
Q 012165          207 AKKVVVVGGGYIGMEVAAAAVGWKLDTT-------------------------------------RYEQLYQQNGVKFVK  249 (469)
Q Consensus       207 ~~~vvVvG~G~~g~e~A~~l~~~g~~v~-------------------------------------~~~~~l~~~gV~~~~  249 (469)
                      ..+|+|||+|+.|+.+|..|++.|.+++                                     .+.+.+++.|++++.
T Consensus        14 ~~dvvIIG~G~aGl~aA~~l~~~g~~v~lie~~~~~gg~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~   93 (360)
T 3ab1_A           14 MRDLTIIGGGPTGIFAAFQCGMNNISCRIIESMPQLGGQLAALYPEKHIYDVAGFPEVPAIDLVESLWAQAERYNPDVVL   93 (360)
T ss_dssp             CEEEEEECCSHHHHHHHHHHHHTTCCEEEECSSSSSCHHHHHTCTTSEECCSTTCSSEEHHHHHHHHHHHHHTTCCEEEC
T ss_pred             CCCEEEECCCHHHHHHHHHHHhCCCCEEEEecCCCCCCcccccCCCcccccCCCCCCCCHHHHHHHHHHHHHHhCCEEEc
Confidence            4689999999999999999999888776                                     123445667999999


Q ss_pred             CCeEEEEEeCCCCcEEEEEcCCCCEEeCCEEEEccCCc
Q 012165          250 GASIKNLEAGSDGRVAAVKLEDGSTIDADTIVIGIGAK  287 (469)
Q Consensus       250 ~~~v~~i~~~~~~~v~~v~~~~g~~i~~D~vi~a~G~~  287 (469)
                      ++.|+.++..+++.. .|.+.+|+++.+|.||+|+|..
T Consensus        94 ~~~v~~i~~~~~~~~-~v~~~~g~~~~~~~li~AtG~~  130 (360)
T 3ab1_A           94 NETVTKYTKLDDGTF-ETRTNTGNVYRSRAVLIAAGLG  130 (360)
T ss_dssp             SCCEEEEEECTTSCE-EEEETTSCEEEEEEEEECCTTC
T ss_pred             CCEEEEEEECCCceE-EEEECCCcEEEeeEEEEccCCC
Confidence            999999986544333 5788889899999999999994

>3v76_A Flavoprotein; structural genomics, PSI-biology, NEW YORK structural genomi research consortium, nysgrc; HET: FDA; 2.51A {Sinorhizobium meliloti}

Probab=97.90  E-value=3e-05  Score=76.81  Aligned_cols=81  Identities=26%  Similarity=0.338  Sum_probs=65.6

Q ss_pred             cCCeEEEEcCChHHHHHHHHHHhCCCeEe---------------------------------------------------
Q 012165          206 KAKKVVVVGGGYIGMEVAAAAVGWKLDTT---------------------------------------------------  234 (469)
Q Consensus       206 ~~~~vvVvG~G~~g~e~A~~l~~~g~~v~---------------------------------------------------  234 (469)
                      ...+|+|||+|+.|+.+|..|++.|.+|+                                                   
T Consensus        26 ~~~dViIIGgG~AGl~aA~~La~~G~~V~llEk~~~~g~~~~~sGgg~~n~t~~~~~~~~~~~~~~~~~~~~l~~~~~~~  105 (417)
T 3v76_A           26 EKQDVVIIGAGAAGMMCAIEAGKRGRRVLVIDHARAPGEKIRISGGGRCNFTNIHASPRNFLSGNPHFCKSALARYRPQD  105 (417)
T ss_dssp             --CCEEEECCSHHHHHHHHHHHHTTCCEEEECSSSSSCHHHHHSGGGTCEEEETTCSGGGEEESSTTTTHHHHHHSCHHH
T ss_pred             CCCCEEEECcCHHHHHHHHHHHHCCCcEEEEeCCCCCCceeEEcCCCceeccCCCCCHHHHhhcCHHHHHHHHHhcCHHH
Confidence            34689999999999999999999998876                                                   


Q ss_pred             -------------------------------eeHHHHHHcCcEEEcCCeEEEEEeCCCCcEEEEEcCCCCEEeCCEEEEc
Q 012165          235 -------------------------------RYEQLYQQNGVKFVKGASIKNLEAGSDGRVAAVKLEDGSTIDADTIVIG  283 (469)
Q Consensus       235 -------------------------------~~~~~l~~~gV~~~~~~~v~~i~~~~~~~v~~v~~~~g~~i~~D~vi~a  283 (469)
                                                     .+.+.+++.||+++++++|+++..+++ . ..|.+.+| ++.+|.||+|
T Consensus       106 ~~~~~~~~Gi~~~~~~~g~~~~~~~~~~l~~~L~~~l~~~Gv~i~~~~~V~~i~~~~~-~-~~V~~~~g-~i~ad~VIlA  182 (417)
T 3v76_A          106 FVALVERHGIGWHEKTLGQLFCDHSAKDIIRMLMAEMKEAGVQLRLETSIGEVERTAS-G-FRVTTSAG-TVDAASLVVA  182 (417)
T ss_dssp             HHHHHHHTTCCEEECSTTEEEESSCHHHHHHHHHHHHHHHTCEEECSCCEEEEEEETT-E-EEEEETTE-EEEESEEEEC
T ss_pred             HHHHHHHcCCCcEEeeCCEEeeCCCHHHHHHHHHHHHHHCCCEEEECCEEEEEEEeCC-E-EEEEECCc-EEEeeEEEEC
Confidence                                           123445677999999999999986533 3 35788888 8999999999


Q ss_pred             cCCccC
Q 012165          284 IGAKPT  289 (469)
Q Consensus       284 ~G~~p~  289 (469)
                      +|..+.
T Consensus       183 tG~~S~  188 (417)
T 3v76_A          183 SGGKSI  188 (417)
T ss_dssp             CCCSSC
T ss_pred             CCCccC
Confidence            998763

>2wdq_A Succinate dehydrogenase flavoprotein subunit; succinate dehydrogenase activity, cell inner membrane, trica acid cycle; HET: FAD HEM CBE; 2.40A {Escherichia coli} PDB: 1nen_A* 2acz_A* 1nek_A* 2wdr_A* 2wdv_A* 2wp9_A* 2ws3_A* 2wu2_A* 2wu5_A*

Probab=97.90  E-value=1.7e-05  Score=82.33  Aligned_cols=35  Identities=26%  Similarity=0.293  Sum_probs=31.9

Q ss_pred             CCcEEEEcCcHHHHHHHHHHHHcCCCCCcEEEEcCCCC
Q 012165           51 NREFVIVGGGNAAGYAARTFVEHGMADGRLCIVSKEAY   88 (469)
Q Consensus        51 ~~~vvIIGgG~AGl~aA~~L~~~g~~~~~V~vie~~~~   88 (469)
                      .+||||||||+||++||..|++.|.   +|+|+|+.+.
T Consensus         7 ~~DVvVVGaG~AGl~AA~~la~~G~---~V~vlEK~~~   41 (588)
T 2wdq_A            7 EFDAVVIGAGGAGMRAALQISQSGQ---TCALLSKVFP   41 (588)
T ss_dssp             EEEEEEECCSHHHHHHHHHHHHTTC---CEEEEESSCG
T ss_pred             cCCEEEECcCHHHHHHHHHHHHCCC---cEEEEecCCC
Confidence            4799999999999999999999987   7999999753

>3f8d_A Thioredoxin reductase (TRXB-3); redox protein, nucleotide binding, FAD, flavoprotein, oxidoreductase; HET: FAD; 1.40A {Sulfolobus solfataricus} PDB: 3f8p_A* 3f8r_A*

Probab=97.89  E-value=3.6e-05  Score=73.10  Aligned_cols=81  Identities=21%  Similarity=0.313  Sum_probs=66.1

Q ss_pred             CeEEEEcCChHHHHHHHHHHhCCCeEe--------------------------------eeHHHHHHcCcEEEcCCeEEE
Q 012165          208 KKVVVVGGGYIGMEVAAAAVGWKLDTT--------------------------------RYEQLYQQNGVKFVKGASIKN  255 (469)
Q Consensus       208 ~~vvVvG~G~~g~e~A~~l~~~g~~v~--------------------------------~~~~~l~~~gV~~~~~~~v~~  255 (469)
                      .+|+|||+|+.|+.+|..|++.|.+++                                .+.+.+++.|++++. ..+.+
T Consensus        16 ~~vvIIG~G~aGl~aA~~l~~~g~~v~lie~~~gg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~-~~v~~   94 (323)
T 3f8d_A           16 FDVIIVGLGPAAYGAALYSARYMLKTLVIGETPGGQLTEAGIVDDYLGLIEIQASDMIKVFNKHIEKYEVPVLL-DIVEK   94 (323)
T ss_dssp             EEEEEECCSHHHHHHHHHHHHTTCCEEEEESSTTGGGGGCCEECCSTTSTTEEHHHHHHHHHHHHHTTTCCEEE-SCEEE
T ss_pred             cCEEEECccHHHHHHHHHHHHCCCcEEEEeccCCCeecccccccccCCCCCCCHHHHHHHHHHHHHHcCCEEEE-EEEEE
Confidence            589999999999999999999988765                                234566678999999 88999


Q ss_pred             EEeCCCCcEEEEEcCCCCEEeCCEEEEccCCccCCc
Q 012165          256 LEAGSDGRVAAVKLEDGSTIDADTIVIGIGAKPTVS  291 (469)
Q Consensus       256 i~~~~~~~v~~v~~~~g~~i~~D~vi~a~G~~p~~~  291 (469)
                      +...+ +. ..+.+.+|+++.+|.+|+|+|..|...
T Consensus        95 i~~~~-~~-~~v~~~~g~~~~~d~lvlAtG~~~~~~  128 (323)
T 3f8d_A           95 IENRG-DE-FVVKTKRKGEFKADSVILGIGVKRRKL  128 (323)
T ss_dssp             EEEC---C-EEEEESSSCEEEEEEEEECCCCEECCC
T ss_pred             EEecC-CE-EEEEECCCCEEEcCEEEECcCCCCccC
Confidence            98643 33 257788888999999999999998654

>2h88_A Succinate dehydrogenase flavoprotein subunit; complex II, membrane protein, heme protein, iron sulfur PROT cytochrome B, oxidoreductase; HET: FAD BHG HEM UNL; 1.74A {Gallus gallus} PDB: 1yq4_A* 1yq3_A* 2fbw_A* 2h89_A* 2wqy_A* 1zoy_A* 1zp0_A* 3abv_A* 3ae1_A* 3ae2_A* 3ae3_A* 3ae4_A* 3ae5_A* 3ae6_A* 3ae7_A* 3ae8_A* 3ae9_A* 3aea_A* 3aeb_A* 3aec_A* ...

Probab=97.88  E-value=1.8e-05  Score=82.39  Aligned_cols=34  Identities=32%  Similarity=0.322  Sum_probs=31.5

Q ss_pred             CCcEEEEcCcHHHHHHHHHHHHcCCCCCcEEEEcCCC
Q 012165           51 NREFVIVGGGNAAGYAARTFVEHGMADGRLCIVSKEA   87 (469)
Q Consensus        51 ~~~vvIIGgG~AGl~aA~~L~~~g~~~~~V~vie~~~   87 (469)
                      .+||||||||+||++||..|++.|.   +|+|+|+..
T Consensus        18 ~~DVvVVG~G~AGl~AAl~aa~~G~---~V~vlEK~~   51 (621)
T 2h88_A           18 EFDAVVVGAGGAGLRAAFGLSEAGF---NTACVTKLF   51 (621)
T ss_dssp             EEEEEEECCSHHHHHHHHHHHHTTC---CEEEEESSC
T ss_pred             cCCEEEECccHHHHHHHHHHHHCCC---cEEEEeccC
Confidence            4799999999999999999999987   799999975

>3gwf_A Cyclohexanone monooxygenase; flavoprotein biocatalysis baeyer-villiger oxidation green CH monooxygenase, oxidoreductase; HET: FAD NAP; 2.20A {Rhodococcus SP} PDB: 3gwd_A* 3ucl_A*

Probab=97.85  E-value=0.00011  Score=75.44  Aligned_cols=83  Identities=19%  Similarity=0.253  Sum_probs=67.2

Q ss_pred             CeEEEEcCChHHHHHHHHHH-hCCCeEe----------------------------------------------------
Q 012165          208 KKVVVVGGGYIGMEVAAAAV-GWKLDTT----------------------------------------------------  234 (469)
Q Consensus       208 ~~vvVvG~G~~g~e~A~~l~-~~g~~v~----------------------------------------------------  234 (469)
                      .+|+|||+|+.|+.+|..|+ +.|.+++                                                    
T Consensus         9 ~dVvIIGaG~aGl~aA~~L~~~~G~~v~viE~~~~~GGtw~~~~ypg~~~d~~s~~~~~~~~~~~~~~~~~~~~~~~~~e   88 (540)
T 3gwf_A            9 VDAVVIGAGFGGIYAVHKLHHELGLTTVGFDKADGPGGTWYWNRYPGALSDTESHLYRFSFDRDLLQESTWKTTYITQPE   88 (540)
T ss_dssp             EEEEEECCSHHHHHHHHHHHHTTCCCEEEEESSSSSCTHHHHCCCTTCEEEEEGGGSSCCSCHHHHHHCCCSBSEEEHHH
T ss_pred             CCEEEECcCHHHHHHHHHHHHcCCCCEEEEECCCCCCCcccccCCCCceecCCcceeeeccccccccCCCCcccCCCHHH
Confidence            47999999999999999999 8887776                                                    


Q ss_pred             ---eeHHHHHHcCc--EEEcCCeEEEEEeCCCCcEEEEEcCCCCEEeCCEEEEccCC--ccCC
Q 012165          235 ---RYEQLYQQNGV--KFVKGASIKNLEAGSDGRVAAVKLEDGSTIDADTIVIGIGA--KPTV  290 (469)
Q Consensus       235 ---~~~~~l~~~gV--~~~~~~~v~~i~~~~~~~v~~v~~~~g~~i~~D~vi~a~G~--~p~~  290 (469)
                         .+.+..++.|+  .++++++|++++.++++....|.+++|+++.+|.||+|+|.  +|..
T Consensus        89 i~~~l~~~~~~~g~~~~i~~~~~V~~i~~~~~~~~~~V~~~~G~~i~ad~lV~AtG~~s~p~~  151 (540)
T 3gwf_A           89 ILEYLEDVVDRFDLRRHFKFGTEVTSALYLDDENLWEVTTDHGEVYRAKYVVNAVGLLSAINF  151 (540)
T ss_dssp             HHHHHHHHHHHTTCGGGEEESCCEEEEEEETTTTEEEEEETTSCEEEEEEEEECCCSCCSBCC
T ss_pred             HHHHHHHHHHHcCCcceeEeccEEEEEEEeCCCCEEEEEEcCCCEEEeCEEEECCcccccCCC
Confidence               12334566788  88999999999876554455788899999999999999994  5553

>4g6h_A Rotenone-insensitive NADH-ubiquinone oxidoreducta mitochondrial; rossmann fold, electron transfer, FAD, oxidoreductase; HET: FAD NAD; 2.26A {Saccharomyces cerevisiae} PDB: 4g6g_A* 4g73_A* 4g74_A* 4g9k_A* 4gap_A* 4gav_A*

Probab=97.83  E-value=1.5e-05  Score=81.10  Aligned_cols=99  Identities=21%  Similarity=0.305  Sum_probs=70.3

Q ss_pred             CcEEEEcCcHHHHHHHHHHHHcCC-----------CCCcEEEEcCCCCCCCCCCCCcccccCCCCCCCCCCCCCccccCC
Q 012165           52 REFVIVGGGNAAGYAARTFVEHGM-----------ADGRLCIVSKEAYAPYERPALTKGYLFPLDKKPARLPGFHTCVGS  120 (469)
Q Consensus        52 ~~vvIIGgG~AGl~aA~~L~~~g~-----------~~~~V~vie~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~  120 (469)
                      .+++|||||+.|+.+|..|++.+.           .+.+|++||..+...   |.++.           .+         
T Consensus       218 ~~vvVvGgG~tGvE~A~~l~~~~~~~l~~~~~~~~~~~~V~lve~~~~il---~~~~~-----------~~---------  274 (502)
T 4g6h_A          218 LSIVVVGGGPTGVEAAGELQDYVHQDLRKFLPALAEEVQIHLVEALPIVL---NMFEK-----------KL---------  274 (502)
T ss_dssp             TEEEEECCSHHHHHHHHHHHHHHHHTHHHHCHHHHHHCEEEEECSSSSSS---TTSCH-----------HH---------
T ss_pred             cceEEECCCcchhhhHHHHHHHHHHHHHhhcccccccceeEEeccccccc---cCCCH-----------HH---------
Confidence            369999999999999998876431           124799999876531   11111           00         


Q ss_pred             CCCCCCHhHHHHCCcEEEeCCcEEEEeCCCcEEE--eCCC----eEEEeccEEeccCCCCC
Q 012165          121 GGERQTPEWYKEKGIEMIYQDPVTSIDIEKQTLI--TNSG----KLLKYGSLIVATGCTAS  175 (469)
Q Consensus       121 ~~~~~~~~~~~~~~i~~~~~~~v~~id~~~~~v~--~~~g----~~~~yd~lVlAtG~~~~  175 (469)
                        .....+.+++.||+++++++|.+++.+...+.  ..+|    +++++|.+|+|+|..|.
T Consensus       275 --~~~~~~~L~~~GV~v~~~~~v~~v~~~~~~~~~~~~dg~~~~~~i~ad~viwa~Gv~~~  333 (502)
T 4g6h_A          275 --SSYAQSHLENTSIKVHLRTAVAKVEEKQLLAKTKHEDGKITEETIPYGTLIWATGNKAR  333 (502)
T ss_dssp             --HHHHHHHHHHTTCEEETTEEEEEECSSEEEEEEECTTSCEEEEEEECSEEEECCCEECC
T ss_pred             --HHHHHHHHHhcceeeecCceEEEEeCCceEEEEEecCcccceeeeccCEEEEccCCcCC
Confidence              12345678899999999999999987665443  3455    36999999999997654

>1pn0_A Phenol 2-monooxygenase; two dimers, TLS refinement, oxidoreductase; HET: FAD; 1.70A {Trichosporon cutaneum} SCOP: c.3.1.2 c.47.1.10 d.16.1.2 PDB: 1foh_A*

Probab=97.82  E-value=9.4e-06  Score=85.46  Aligned_cols=36  Identities=31%  Similarity=0.443  Sum_probs=32.5

Q ss_pred             CCcEEEEcCcHHHHHHHHHHHH-----cCCCCCcEEEEcCCCCC
Q 012165           51 NREFVIVGGGNAAGYAARTFVE-----HGMADGRLCIVSKEAYA   89 (469)
Q Consensus        51 ~~~vvIIGgG~AGl~aA~~L~~-----~g~~~~~V~vie~~~~~   89 (469)
                      ++||+|||||++||++|..|++     .|+   +|+|||+.+..
T Consensus         8 ~~dVlIVGaGpaGL~lA~~La~~~~~~~Gi---~v~viE~~~~~   48 (665)
T 1pn0_A            8 YCDVLIVGAGPAGLMAARVLSEYVRQKPDL---KVRIIDKRSTK   48 (665)
T ss_dssp             EEEEEEECCSHHHHHHHHHHHHHHHHSTTC---CEEEECSSSSC
T ss_pred             CCcEEEECcCHHHHHHHHHHhccccccCCC---CEEEEeCCCCC
Confidence            4799999999999999999999     887   79999987653

>1hyu_A AHPF, alkyl hydroperoxide reductase subunit F; thiol-thiolate hydrogen bond, nucleotide binding fold, thior reductase, thioredoxin; HET: FAD; 2.00A {Salmonella typhimurium} SCOP: c.3.1.5 c.3.1.5 c.47.1.2 c.47.1.2 PDB: 1zyn_A 1zyp_A

Probab=97.81  E-value=5.4e-05  Score=77.38  Aligned_cols=84  Identities=23%  Similarity=0.317  Sum_probs=67.9

Q ss_pred             CCeEEEEcCChHHHHHHHHHHhCCCeEe--------------------------------eeHHHHHHcCcEEEcCCeEE
Q 012165          207 AKKVVVVGGGYIGMEVAAAAVGWKLDTT--------------------------------RYEQLYQQNGVKFVKGASIK  254 (469)
Q Consensus       207 ~~~vvVvG~G~~g~e~A~~l~~~g~~v~--------------------------------~~~~~l~~~gV~~~~~~~v~  254 (469)
                      ..+|+|||+|+.|+.+|..|++.|.++.                                .+.+.+++.|++++.++++.
T Consensus       212 ~~dVvIIGgG~AGl~aA~~la~~G~~v~lie~~~GG~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~gv~v~~~~~v~  291 (521)
T 1hyu_A          212 AYDVLIVGSGPAGAAAAVYSARKGIRTGLMGERFGGQVLDTVDIENYISVPKTEGQKLAGALKAHVSDYDVDVIDSQSAS  291 (521)
T ss_dssp             CEEEEEECCSHHHHHHHHHHHHTTCCEEEECSSTTGGGTTCSCBCCBTTBSSBCHHHHHHHHHHHHHTSCEEEECSCCEE
T ss_pred             cccEEEECCcHHHHHHHHHHHhCCCeEEEEECCCCCcccccccccccCCCCCCCHHHHHHHHHHHHHHcCCEEEcCCEEE
Confidence            4579999999999999999999988775                                23455677899999999999


Q ss_pred             EEEeCCC-CcEEEEEcCCCCEEeCCEEEEccCCccCC
Q 012165          255 NLEAGSD-GRVAAVKLEDGSTIDADTIVIGIGAKPTV  290 (469)
Q Consensus       255 ~i~~~~~-~~v~~v~~~~g~~i~~D~vi~a~G~~p~~  290 (469)
                      .+....+ +....|.+++|+++.+|.+|+|+|.+|..
T Consensus       292 ~i~~~~~~~~~~~V~~~~g~~~~~d~vVlAtG~~~~~  328 (521)
T 1hyu_A          292 KLVPAATEGGLHQIETASGAVLKARSIIIATGAKWRN  328 (521)
T ss_dssp             EEECCSSTTSCEEEEETTSCEEEEEEEEECCCEEECC
T ss_pred             EEEeccCCCceEEEEECCCCEEEcCEEEECCCCCcCC
Confidence            9974321 22335788899899999999999988754

>3qfa_A Thioredoxin reductase 1, cytoplasmic; protein-protein complex, rossmann fold, HO pyridine nucleotide disulfide oxidoreductase, electron TRAN oxidoreductase; HET: FAD; 2.20A {Homo sapiens} PDB: 3qfb_A* 2j3n_A* 2zzc_A* 2zzb_A* 2zz0_A* 2cfy_A* 1h6v_A* 3ean_A* 3eao_A*

Probab=97.79  E-value=3.6e-05  Score=78.73  Aligned_cols=97  Identities=15%  Similarity=0.230  Sum_probs=66.3

Q ss_pred             CCCcEEEEcCcHHHHHHHHHHHHcCCCCCcEEEEcCCCCCCCCCCCCcccccCCCCCCCCCCCCCccccCCCCCCCCHhH
Q 012165           50 ENREFVIVGGGNAAGYAARTFVEHGMADGRLCIVSKEAYAPYERPALTKGYLFPLDKKPARLPGFHTCVGSGGERQTPEW  129 (469)
Q Consensus        50 ~~~~vvIIGgG~AGl~aA~~L~~~g~~~~~V~vie~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  129 (469)
                      ..++++|||||+.|+.+|..|++.|.   +|+++++....    +.+..           .+           .....+.
T Consensus       209 ~~~~vvVIGgG~ig~E~A~~l~~~G~---~Vtlv~~~~~l----~~~d~-----------~~-----------~~~~~~~  259 (519)
T 3qfa_A          209 CPGKTLVVGASYVALECAGFLAGIGL---DVTVMVRSILL----RGFDQ-----------DM-----------ANKIGEH  259 (519)
T ss_dssp             CCCSEEEECCSHHHHHHHHHHHHTTC---CEEEEESSCSS----TTSCH-----------HH-----------HHHHHHH
T ss_pred             cCCeEEEECCcHHHHHHHHHHHHcCC---eEEEEeccccc----ccCCH-----------HH-----------HHHHHHH
Confidence            34679999999999999999999986   79999864211    10000           00           1123456


Q ss_pred             HHHCCcEEEeCCcEEEEeCCC----c--EEE--eCCC---eEEEeccEEeccCCCCC
Q 012165          130 YKEKGIEMIYQDPVTSIDIEK----Q--TLI--TNSG---KLLKYGSLIVATGCTAS  175 (469)
Q Consensus       130 ~~~~~i~~~~~~~v~~id~~~----~--~v~--~~~g---~~~~yd~lVlAtG~~~~  175 (469)
                      +++.||+++.++++..+....    .  .++  ..++   .++++|.|++|+|.+|.
T Consensus       260 l~~~GV~v~~~~~v~~v~~~~~~~~~~~~v~~~~~~g~~~~~~~~D~vi~a~G~~p~  316 (519)
T 3qfa_A          260 MEEHGIKFIRQFVPIKVEQIEAGTPGRLRVVAQSTNSEEIIEGEYNTVMLAIGRDAC  316 (519)
T ss_dssp             HHHTTCEEEESEEEEEEEEEECCTTCEEEEEEEESSSSCEEEEEESEEEECSCEEES
T ss_pred             HHHCCCEEEeCCeEEEEEEccCCCCceEEEEEEECCCcEEEEEECCEEEEecCCccc
Confidence            788999999987766664321    2  232  2344   25789999999998875

>4fk1_A Putative thioredoxin reductase; structural genomics, niaid, national institute of allergy AN infectious diseases; HET: MSE FAD; 2.40A {Bacillus anthracis} PDB: 4fk1_C*

Probab=97.79  E-value=6.1e-05  Score=71.20  Aligned_cols=81  Identities=12%  Similarity=0.189  Sum_probs=58.6

Q ss_pred             eEEEEcCChHHHHHHHHHHhCCCeEe-------------------------------eeHHHHHH-cCcEEEcCCeEEEE
Q 012165          209 KVVVVGGGYIGMEVAAAAVGWKLDTT-------------------------------RYEQLYQQ-NGVKFVKGASIKNL  256 (469)
Q Consensus       209 ~vvVvG~G~~g~e~A~~l~~~g~~v~-------------------------------~~~~~l~~-~gV~~~~~~~v~~i  256 (469)
                      .|+|||+|+.|+.+|..+++.|.++.                               ...+.+.+ .++.++.. .+..+
T Consensus         8 DVvIIGaGpAGlsAA~~lar~g~~v~lie~~~~gg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~   86 (304)
T 4fk1_A            8 DCAVIGAGPAGLNASLVLGRARKQIALFDNNTNRNRVTQNSHGFITRDGIKPEEFKEIGLNEVMKYPSVHYYEK-TVVMI   86 (304)
T ss_dssp             EEEEECCSHHHHHHHHHHHHTTCCEEEEECSCCGGGGSSCBCCSTTCTTBCHHHHHHHHHHHHTTSTTEEEEEC-CEEEE
T ss_pred             CEEEECCCHHHHHHHHHHHHCCCCEEEEeCCCCCCeeeeecCCccCCCCCCHHHHHHHHHHHHHhcCCEEEEee-EEEEe
Confidence            69999999999999999999998876                               01112223 34555544 45555


Q ss_pred             EeCCCCcEEEEEcCCCCEEeCCEEEEccCCccCCc
Q 012165          257 EAGSDGRVAAVKLEDGSTIDADTIVIGIGAKPTVS  291 (469)
Q Consensus       257 ~~~~~~~v~~v~~~~g~~i~~D~vi~a~G~~p~~~  291 (469)
                      ...+++.. .+.+.+|+++.+|.||+|||.+|...
T Consensus        87 ~~~~~~~~-~v~~~~g~~~~a~~liiATGs~p~~p  120 (304)
T 4fk1_A           87 TKQSTGLF-EIVTKDHTKYLAERVLLATGMQEEFP  120 (304)
T ss_dssp             EECTTSCE-EEEETTCCEEEEEEEEECCCCEEECC
T ss_pred             eecCCCcE-EEEECCCCEEEeCEEEEccCCccccc
Confidence            54444443 57889999999999999999987643

>4gut_A Lysine-specific histone demethylase 1B; histone demethylase; HET: FAD PGE; 2.00A {Homo sapiens} PDB: 4gur_A* 4gus_A* 4guu_A* 4fwe_A* 4fwf_A* 4fwj_A* 4gu1_A*

Probab=97.79  E-value=0.0001  Score=78.66  Aligned_cols=38  Identities=24%  Similarity=0.453  Sum_probs=33.7

Q ss_pred             CCCCcEEEEcCcHHHHHHHHHHHHcCCCCCcEEEEcCCCCC
Q 012165           49 NENREFVIVGGGNAAGYAARTFVEHGMADGRLCIVSKEAYA   89 (469)
Q Consensus        49 ~~~~~vvIIGgG~AGl~aA~~L~~~g~~~~~V~vie~~~~~   89 (469)
                      ...+||+|||||++|+++|..|++.|+   +|+|+|+.+..
T Consensus       334 ~~~~~v~viG~G~~Gl~aA~~l~~~g~---~v~v~E~~~~~  371 (776)
T 4gut_A          334 YHNKSVIIIGAGPAGLAAARQLHNFGI---KVTVLEAKDRI  371 (776)
T ss_dssp             GTSCEEEEECCSHHHHHHHHHHHHHTC---EEEEECSSSSS
T ss_pred             CCCCeEEEECCCHHHHHHHHHHHHCCC---cEEEEecccce
Confidence            446899999999999999999999987   79999987644

>4hb9_A Similarities with probable monooxygenase; flavin, structural genomics, NEW YORK structural genomics RE consortium, nysgrc, PSI; HET: MSE FAD; 1.93A {Photorhabdus luminescens}

Probab=97.79  E-value=6.8e-05  Score=73.80  Aligned_cols=46  Identities=17%  Similarity=0.206  Sum_probs=38.3

Q ss_pred             cCcEEEcCCeEEEEEeCCCCcEEEEEcCCCCEEeCCEEEEccCCccC
Q 012165          243 NGVKFVKGASIKNLEAGSDGRVAAVKLEDGSTIDADTIVIGIGAKPT  289 (469)
Q Consensus       243 ~gV~~~~~~~v~~i~~~~~~~v~~v~~~~g~~i~~D~vi~a~G~~p~  289 (469)
                      .+..++++++++.++..+++.+ .++++||+++.+|+||-|-|....
T Consensus       122 ~~~~v~~~~~v~~~~~~~~~~v-~v~~~dG~~~~adlvVgADG~~S~  167 (412)
T 4hb9_A          122 LANTIQWNKTFVRYEHIENGGI-KIFFADGSHENVDVLVGADGSNSK  167 (412)
T ss_dssp             CTTTEECSCCEEEEEECTTSCE-EEEETTSCEEEESEEEECCCTTCH
T ss_pred             ccceEEEEEEEEeeeEcCCCeE-EEEECCCCEEEeeEEEECCCCCcc
Confidence            3556888999999987666665 689999999999999999998653

>3l8k_A Dihydrolipoyl dehydrogenase; redox-active center, structural genomics, PSI-2, protein structure initiative; HET: ADP; 2.50A {Sulfolobus solfataricus}

Probab=97.78  E-value=2.4e-05  Score=78.95  Aligned_cols=96  Identities=21%  Similarity=0.238  Sum_probs=68.5

Q ss_pred             CCCcEEEEcCcHHHHHHHHHHHHcCCCCCcEEEEcCCCCCCCCCCCCcccccCCCCCCCCCCCCCccccCCCCCCCCHhH
Q 012165           50 ENREFVIVGGGNAAGYAARTFVEHGMADGRLCIVSKEAYAPYERPALTKGYLFPLDKKPARLPGFHTCVGSGGERQTPEW  129 (469)
Q Consensus        50 ~~~~vvIIGgG~AGl~aA~~L~~~g~~~~~V~vie~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  129 (469)
                      ..++++|||||+.|+.+|..|++.|.   +|++++..+...   +..    +   .                  ....+.
T Consensus       171 ~~~~vvViGgG~~g~e~A~~l~~~g~---~Vtlv~~~~~~l---~~~----~---d------------------~~~~~~  219 (466)
T 3l8k_A          171 LPQDMVIIGAGYIGLEIASIFRLMGV---QTHIIEMLDRAL---ITL----E---D------------------QDIVNT  219 (466)
T ss_dssp             CCSEEEEECCSHHHHHHHHHHHHTTC---EEEEECSSSSSC---TTS----C---C------------------HHHHHH
T ss_pred             CCCeEEEECCCHHHHHHHHHHHHcCC---EEEEEEeCCcCC---CCC----C---C------------------HHHHHH
Confidence            35799999999999999999999986   899999765421   000    0   0                  011111


Q ss_pred             H-HHCCcEEEeCCcEEEEeCCC---cEEEeC--CCe--EEEeccEEeccCCCCCc
Q 012165          130 Y-KEKGIEMIYQDPVTSIDIEK---QTLITN--SGK--LLKYGSLIVATGCTASR  176 (469)
Q Consensus       130 ~-~~~~i~~~~~~~v~~id~~~---~~v~~~--~g~--~~~yd~lVlAtG~~~~~  176 (469)
                      + +...++++.++++.+++.++   ..+.+.  +|+  ++++|.+|+|+|.+|..
T Consensus       220 l~~~l~v~i~~~~~v~~i~~~~~~~v~v~~~~~~G~~~~i~~D~vi~a~G~~p~~  274 (466)
T 3l8k_A          220 LLSILKLNIKFNSPVTEVKKIKDDEYEVIYSTKDGSKKSIFTNSVVLAAGRRPVI  274 (466)
T ss_dssp             HHHHHCCCEECSCCEEEEEEEETTEEEEEECCTTSCCEEEEESCEEECCCEEECC
T ss_pred             HHhcCEEEEEECCEEEEEEEcCCCcEEEEEEecCCceEEEEcCEEEECcCCCccc
Confidence            2 22349999999999997743   346666  565  79999999999988763

>2x3n_A Probable FAD-dependent monooxygenase; oxidoreductase; HET: FAD; 1.75A {Pseudomonas aeruginosa}

Probab=97.78  E-value=8.4e-05  Score=73.12  Aligned_cols=81  Identities=16%  Similarity=0.139  Sum_probs=65.2

Q ss_pred             CeEEEEcCChHHHHHHHHHHhCCCeEe-----------------------------------------------------
Q 012165          208 KKVVVVGGGYIGMEVAAAAVGWKLDTT-----------------------------------------------------  234 (469)
Q Consensus       208 ~~vvVvG~G~~g~e~A~~l~~~g~~v~-----------------------------------------------------  234 (469)
                      .+|+|||+|+.|+.+|..|++.|.+|+                                                     
T Consensus         7 ~dVvIVGaG~aGl~~A~~L~~~G~~V~viE~~~~~~~~~~~~~l~~~~~~~l~~~g~~~~~~~~~~~~~~~~~~~~~g~~   86 (399)
T 2x3n_A            7 IDVLINGCGIGGAMLAYLLGRQGHRVVVVEQARRERAINGADLLKPAGIRVVEAAGLLAEVTRRGGRVRHELEVYHDGEL   86 (399)
T ss_dssp             EEEEEECCSHHHHHHHHHHHHTTCCEEEECSSCCC---CCCCEECHHHHHHHHHTTCHHHHHHTTCEEECEEEEEETTEE
T ss_pred             CCEEEECcCHHHHHHHHHHHhCCCcEEEEeCCCCCCccCceeeECchHHHHHHHcCcHHHHHHhCCCcceeEEEeCCCCE
Confidence            479999999999999999999988876                                                     


Q ss_pred             -------------------------eeHHHHHHc-CcEEEcCCeEEEEEeCCCCcEE-EEEcCCCCEEeCCEEEEccCCc
Q 012165          235 -------------------------RYEQLYQQN-GVKFVKGASIKNLEAGSDGRVA-AVKLEDGSTIDADTIVIGIGAK  287 (469)
Q Consensus       235 -------------------------~~~~~l~~~-gV~~~~~~~v~~i~~~~~~~v~-~v~~~~g~~i~~D~vi~a~G~~  287 (469)
                                               .+.+.+++. |++++.++++++++.++++ +. .|++.+|+++.+|.||.|.|..
T Consensus        87 ~~~~~~~~~~~~~~~~~~~r~~l~~~L~~~~~~~~gv~i~~~~~v~~i~~~~~~-v~g~v~~~~g~~~~ad~vV~AdG~~  165 (399)
T 2x3n_A           87 LRYFNYSSVDARGYFILMPCESLRRLVLEKIDGEATVEMLFETRIEAVQRDERH-AIDQVRLNDGRVLRPRVVVGADGIA  165 (399)
T ss_dssp             EEEEETTSSCGGGCEEECCHHHHHHHHHHHHTTCTTEEEECSCCEEEEEECTTS-CEEEEEETTSCEEEEEEEEECCCTT
T ss_pred             EEecchHHhcccCccccccHHHHHHHHHHHhhhcCCcEEEcCCEEEEEEEcCCc-eEEEEEECCCCEEECCEEEECCCCC
Confidence                                     112233344 8999999999999875443 32 5788899899999999999987


Q ss_pred             cC
Q 012165          288 PT  289 (469)
Q Consensus       288 p~  289 (469)
                      ..
T Consensus       166 s~  167 (399)
T 2x3n_A          166 SY  167 (399)
T ss_dssp             CH
T ss_pred             hH
Confidence            64

>3alj_A 2-methyl-3-hydroxypyridine-5-carboxylic acid OXYG; alpha/beta fold, oxidoreductase; HET: FAD; 1.48A {Mesorhizobium loti} PDB: 3alh_A* 3ali_A* 3gmb_A* 3gmc_A* 3alk_A* 3alm_A* 3all_A*

Probab=97.77  E-value=0.00011  Score=71.67  Aligned_cols=78  Identities=23%  Similarity=0.328  Sum_probs=65.1

Q ss_pred             CCeEEEEcCChHHHHHHHHHHhCCCeEe----------------------------------------------------
Q 012165          207 AKKVVVVGGGYIGMEVAAAAVGWKLDTT----------------------------------------------------  234 (469)
Q Consensus       207 ~~~vvVvG~G~~g~e~A~~l~~~g~~v~----------------------------------------------------  234 (469)
                      ..+|+|||+|+.|+.+|..|++.|.+|+                                                    
T Consensus        11 ~~dVvIVGaG~aGl~~A~~L~~~G~~v~viE~~~~~~~~~~~~~l~~~~~~~l~~~g~~~~~~~~~~~~~~~~~~~~g~~   90 (379)
T 3alj_A           11 TRRAEVAGGGFAGLTAAIALKQNGWDVRLHEKSSELRAFGAGIYLWHNGLRVLEGLGALDDVLQGSHTPPTYETWMHNKS   90 (379)
T ss_dssp             CCEEEEECCSHHHHHHHHHHHHTTCEEEEECSSSSCCCCSSEEEEEHHHHHHHHHTTCHHHHHTTCBCCSCEEEEETTEE
T ss_pred             CCeEEEECCCHHHHHHHHHHHHCCCCEEEEecCCCCCCCCceEEeCccHHHHHHHcCCHHHHHhhCCCccceEEEeCCce
Confidence            4689999999999999999999998876                                                    


Q ss_pred             ---------------------eeHHHHHHcCcEEEcCCeEEEEEeCCCCcEEEEEcCCCCEEeCCEEEEccCCccC
Q 012165          235 ---------------------RYEQLYQQNGVKFVKGASIKNLEAGSDGRVAAVKLEDGSTIDADTIVIGIGAKPT  289 (469)
Q Consensus       235 ---------------------~~~~~l~~~gV~~~~~~~v~~i~~~~~~~v~~v~~~~g~~i~~D~vi~a~G~~p~  289 (469)
                                           .+.+.+++.|++++.++++++++.  ++   .|++.+|+++.+|.||.|+|..+.
T Consensus        91 ~~~~~~~~~~~~~~~r~~l~~~L~~~~~~~gv~i~~~~~v~~i~~--~~---~v~~~~g~~~~ad~vV~AdG~~s~  161 (379)
T 3alj_A           91 VSKETFNGLPWRIMTRSHLHDALVNRARALGVDISVNSEAVAADP--VG---RLTLQTGEVLEADLIVGADGVGSK  161 (379)
T ss_dssp             EEEECGGGCCEEEEEHHHHHHHHHHHHHHTTCEEESSCCEEEEET--TT---EEEETTSCEEECSEEEECCCTTCH
T ss_pred             eeeccCCCCceEEECHHHHHHHHHHHHHhcCCEEEeCCEEEEEEe--CC---EEEECCCCEEEcCEEEECCCccHH
Confidence                                 012334567999999999999985  44   477889999999999999999874

>2i0z_A NAD(FAD)-utilizing dehydrogenases; structural genomics, PSI-2, protein structure initiative, midwest center for structural genomics, MCSG; HET: FAD; 1.84A {Bacillus cereus} SCOP: c.3.1.8 e.74.1.1

Probab=97.77  E-value=0.0001  Score=73.89  Aligned_cols=49  Identities=27%  Similarity=0.531  Sum_probs=41.3

Q ss_pred             HHHHcCcEEEcCCeEEEEEeCCCCcEEEEEcCCCCEEeCCEEEEccCCcc
Q 012165          239 LYQQNGVKFVKGASIKNLEAGSDGRVAAVKLEDGSTIDADTIVIGIGAKP  288 (469)
Q Consensus       239 ~l~~~gV~~~~~~~v~~i~~~~~~~v~~v~~~~g~~i~~D~vi~a~G~~p  288 (469)
                      .+++.||+++++++|+++..+ ++.+..|.+.+|+++.+|.||+|+|..+
T Consensus       143 ~~~~~GV~i~~~~~V~~i~~~-~~~v~~V~~~~G~~i~Ad~VVlAtGg~s  191 (447)
T 2i0z_A          143 RLKDLGVKIRTNTPVETIEYE-NGQTKAVILQTGEVLETNHVVIAVGGKS  191 (447)
T ss_dssp             HHHHTTCEEECSCCEEEEEEE-TTEEEEEEETTCCEEECSCEEECCCCSS
T ss_pred             HHHHCCCEEEeCcEEEEEEec-CCcEEEEEECCCCEEECCEEEECCCCCc
Confidence            345679999999999999854 5666678889998899999999999876

>2gv8_A Monooxygenase; FMO, FAD, NADPH, cofactor complex, PSI, structura genomics, protein structure initiative; HET: FAD NDP; 2.10A {Schizosaccharomyces pombe} SCOP: c.3.1.5 c.3.1.5 PDB: 2gvc_A* 1vqw_A*

Probab=97.75  E-value=4.9e-05  Score=76.12  Aligned_cols=81  Identities=16%  Similarity=0.241  Sum_probs=63.3

Q ss_pred             CCCcEEEEcCcHHHHHHHHHHHHcCCCCCc-EEEEcCCCCCCCCCCCCcccccCCCCCCCCCCCCCccccCCCCCCCCHh
Q 012165           50 ENREFVIVGGGNAAGYAARTFVEHGMADGR-LCIVSKEAYAPYERPALTKGYLFPLDKKPARLPGFHTCVGSGGERQTPE  128 (469)
Q Consensus        50 ~~~~vvIIGgG~AGl~aA~~L~~~g~~~~~-V~vie~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  128 (469)
                      ..++|+|||+|.+|+-.|..|++.+.   + |+++++.+..                     +                 
T Consensus       211 ~~k~VvVvG~G~sg~e~A~~l~~~~~---~~V~l~~r~~~~---------------------l-----------------  249 (447)
T 2gv8_A          211 VGESVLVVGGASSANDLVRHLTPVAK---HPIYQSLLGGGD---------------------I-----------------  249 (447)
T ss_dssp             TTCCEEEECSSHHHHHHHHHHTTTSC---SSEEEECTTCCS---------------------C-----------------
T ss_pred             CCCEEEEEccCcCHHHHHHHHHHHhC---CcEEEEeCCCCc---------------------C-----------------
Confidence            45789999999999999999999875   6 9999876532                     0                 


Q ss_pred             HHHHCCcEEEeCCcEEEEeCCCcEEEeCCCeE-EEeccEEeccCCCCC
Q 012165          129 WYKEKGIEMIYQDPVTSIDIEKQTLITNSGKL-LKYGSLIVATGCTAS  175 (469)
Q Consensus       129 ~~~~~~i~~~~~~~v~~id~~~~~v~~~~g~~-~~yd~lVlAtG~~~~  175 (469)
                        ...++.+  ...+..+..++..|++.+|+. +.+|.||+|||..|.
T Consensus       250 --~~~~i~~--~~~v~~~~~~~~~v~~~dG~~~~~~D~vi~atG~~~~  293 (447)
T 2gv8_A          250 --QNESLQQ--VPEITKFDPTTREIYLKGGKVLSNIDRVIYCTGYLYS  293 (447)
T ss_dssp             --BCSSEEE--ECCEEEEETTTTEEEETTTEEECCCSEEEECCCBCCC
T ss_pred             --CCCCeEE--ecCeEEEecCCCEEEECCCCEeccCCEEEECCCCCcC
Confidence              1124443  357788876667899999986 689999999998875

>3dme_A Conserved exported protein; structural genomics, PSI-2, PROT structure initiative, northeast structural genomics consort NESG; HET: FAD TLA; 1.70A {Bordetella pertussis}

Probab=97.74  E-value=8.2e-05  Score=72.04  Aligned_cols=59  Identities=12%  Similarity=0.241  Sum_probs=45.0

Q ss_pred             HHHHHcCcEEEcCCeEEEEEeCCCCcEEEEEcCCC--CEEeCCEEEEccCCccCCchhhhc-CC
Q 012165          238 QLYQQNGVKFVKGASIKNLEAGSDGRVAAVKLEDG--STIDADTIVIGIGAKPTVSPFERV-GL  298 (469)
Q Consensus       238 ~~l~~~gV~~~~~~~v~~i~~~~~~~v~~v~~~~g--~~i~~D~vi~a~G~~p~~~~~~~~-gl  298 (469)
                      +.+++.|++++++++|++++.++++.+ .|.+.+|  .++.+|.||+|+|.... .+++.+ |+
T Consensus       158 ~~~~~~Gv~i~~~~~v~~i~~~~~~~~-~v~~~~g~~~~~~a~~VV~A~G~~s~-~l~~~~~g~  219 (369)
T 3dme_A          158 GDAESDGAQLVFHTPLIAGRVRPEGGF-ELDFGGAEPMTLSCRVLINAAGLHAP-GLARRIEGI  219 (369)
T ss_dssp             HHHHHTTCEEECSCCEEEEEECTTSSE-EEEECTTSCEEEEEEEEEECCGGGHH-HHHHTEETS
T ss_pred             HHHHHCCCEEECCCEEEEEEEcCCceE-EEEECCCceeEEEeCEEEECCCcchH-HHHHHhcCC
Confidence            445678999999999999987644434 4788888  48999999999998753 455555 54

>3s5w_A L-ornithine 5-monooxygenase; class B flavin dependent N-hydroxylating monooxygenase, CLAS flavin dependent monooxygenase N-hydroxylating; HET: FAD ONH NAP; 1.90A {Pseudomonas aeruginosa} PDB: 3s61_A*

Probab=97.74  E-value=4.4e-05  Score=76.78  Aligned_cols=122  Identities=18%  Similarity=0.220  Sum_probs=69.4

Q ss_pred             CCCcEEEEcCcHHHHHHHHHHHHcCCCCCcEEEEcCCCCC-CCCCCCCcccccCC--------CC----------CCCCC
Q 012165           50 ENREFVIVGGGNAAGYAARTFVEHGMADGRLCIVSKEAYA-PYERPALTKGYLFP--------LD----------KKPAR  110 (469)
Q Consensus        50 ~~~~vvIIGgG~AGl~aA~~L~~~g~~~~~V~vie~~~~~-~~~~~~l~~~~~~~--------~~----------~~~~~  110 (469)
                      ..++|+|||||..|+.+|..|++... ..+|+++++.+.+ |....++...++.+        ..          .....
T Consensus       226 ~~~~vvVvGgG~sg~e~a~~l~~~~~-~~~Vt~v~r~~~~~p~~~~~~~~~~~~p~~~~~~~~l~~~~~~~~~~~~~~~~  304 (463)
T 3s5w_A          226 KPMKIAIIGGGQSAAEAFIDLNDSYP-SVQADMILRASALKPADDSPFVNEVFAPKFTDLIYSREHAERERLLREYHNTN  304 (463)
T ss_dssp             -CEEEEEECCSHHHHHHHHHHHHHCT-TEEEEEECSSSSCCBCCCCHHHHGGGSHHHHHHHHHSCHHHHHHHHHHTGGGT
T ss_pred             CCCeEEEECCCHhHHHHHHHHHhcCC-CCeEEEEEeCCCCcCccCCccchhccChhHHHHHhcCCHHHHHHHHHHhhccC
Confidence            46799999999999999999999832 3489999987653 11101111100000        00          00000


Q ss_pred             CCCCccccCCCCCCCCHhHHH-----HCCcEEEeCCcEEEEeCCCc--EEEeC---CCe--EEEeccEEeccCCCCC
Q 012165          111 LPGFHTCVGSGGERQTPEWYK-----EKGIEMIYQDPVTSIDIEKQ--TLITN---SGK--LLKYGSLIVATGCTAS  175 (469)
Q Consensus       111 ~~~~~~~~~~~~~~~~~~~~~-----~~~i~~~~~~~v~~id~~~~--~v~~~---~g~--~~~yd~lVlAtG~~~~  175 (469)
                      +.......   .......++.     ..+++++.+++|+++..++.  .|++.   +|+  ++++|.||+|||.+|.
T Consensus       305 ~~~~~~~~---~~~~~~~l~~~~~~~~~~v~i~~~~~v~~v~~~~~~~~v~~~~~~~g~~~~~~~D~Vv~AtG~~p~  378 (463)
T 3s5w_A          305 YSVVDTDL---IERIYGVFYRQKVSGIPRHAFRCMTTVERATATAQGIELALRDAGSGELSVETYDAVILATGYERQ  378 (463)
T ss_dssp             SSCBCHHH---HHHHHHHHHHHHHHCCCCSEEETTEEEEEEEEETTEEEEEEEETTTCCEEEEEESEEEECCCEECC
T ss_pred             CCcCCHHH---HHHHHHHHHHHHhcCCCCeEEEeCCEEEEEEecCCEEEEEEEEcCCCCeEEEECCEEEEeeCCCCC
Confidence            00000000   0000001111     15899999999999876554  35554   565  4899999999998876

>4gde_A UDP-galactopyranose mutase; flavin adenine dinucleotide binding, nucleotide binding, MUT isomerase; HET: FDA; 2.20A {Aspergillus fumigatus} PDB: 3ute_A* 3utg_A* 3uth_A* 4gdc_A* 4gdd_A* 3utf_A* 3ukh_A* 3ukf_A* 3uka_A* 3ukl_A* 3ukk_A* 3ukq_A* 3ukp_A*

Probab=97.72  E-value=1.6e-05  Score=81.08  Aligned_cols=47  Identities=19%  Similarity=0.364  Sum_probs=37.9

Q ss_pred             eHHHHHHcCcEEEcCCeEEEEEeCCCCcEEEEEcCCCCEEeCCEEEEccCC
Q 012165          236 YEQLYQQNGVKFVKGASIKNLEAGSDGRVAAVKLEDGSTIDADTIVIGIGA  286 (469)
Q Consensus       236 ~~~~l~~~gV~~~~~~~v~~i~~~~~~~v~~v~~~~g~~i~~D~vi~a~G~  286 (469)
                      +.+.+++.|+++++++.|++|..+ ++   .+++.||+++.+|.||.++..
T Consensus       228 l~~~l~~~g~~i~~~~~V~~I~~~-~~---~v~~~~G~~~~ad~vI~t~P~  274 (513)
T 4gde_A          228 VANTLPKEKTRFGEKGKVTKVNAN-NK---TVTLQDGTTIGYKKLVSTMAV  274 (513)
T ss_dssp             HHHTSCGGGEEESGGGCEEEEETT-TT---EEEETTSCEEEEEEEEECSCH
T ss_pred             HHHHHHhcCeeeecceEEEEEEcc-CC---EEEEcCCCEEECCEEEECCCH
Confidence            445566789999999999999853 33   367899999999999998764

>3uox_A Otemo; baeyer-villiger monooxygenase, oxidoreductase; HET: FAD; 1.96A {Pseudomonas putida} PDB: 3uov_A* 3uoy_A* 3uoz_A* 3up4_A* 3up5_A*

Probab=97.71  E-value=6.2e-05  Score=77.29  Aligned_cols=83  Identities=13%  Similarity=0.182  Sum_probs=64.5

Q ss_pred             CeEEEEcCChHHHHHHHHHHhCCCeEe-----------------------------------------------------
Q 012165          208 KKVVVVGGGYIGMEVAAAAVGWKLDTT-----------------------------------------------------  234 (469)
Q Consensus       208 ~~vvVvG~G~~g~e~A~~l~~~g~~v~-----------------------------------------------------  234 (469)
                      .+|+|||+|+.|+.+|..|.+.|.+++                                                     
T Consensus        10 ~dVvIIGaG~aGl~aA~~L~~~g~~v~iiE~~~~~GGtw~~~~yPg~~~d~~~~~y~~~f~~~~~~~~~~~~~~~~~~ei   89 (545)
T 3uox_A           10 LDAVVIGAGVTGIYQAFLINQAGMKVLGIEAGEDVGGTWYWNRYPGCRLDTESYAYGYFALKGIIPEWEWSENFASQPEM   89 (545)
T ss_dssp             EEEEEECCSHHHHHHHHHHHHTTCCEEEECSSSSSCTHHHHCCCTTCBCSSCHHHHCHHHHTTSSTTCCCSBSSCBHHHH
T ss_pred             CCEEEECccHHHHHHHHHHHhCCCCEEEEeCCCCCCCccccCCCCceeecCchhhcccccCcccccCCCccccCCCHHHH
Confidence            479999999999999999999888776                                                     


Q ss_pred             --eeHHHHHHcCc--EEEcCCeEEEEEeCCCCcEEEEEcCCCCEEeCCEEEEccC--CccCC
Q 012165          235 --RYEQLYQQNGV--KFVKGASIKNLEAGSDGRVAAVKLEDGSTIDADTIVIGIG--AKPTV  290 (469)
Q Consensus       235 --~~~~~l~~~gV--~~~~~~~v~~i~~~~~~~v~~v~~~~g~~i~~D~vi~a~G--~~p~~  290 (469)
                        .+.+..++.|+  .++++++|.+++.+++.....|.+++|+++.+|.||+|+|  .+|..
T Consensus        90 ~~yl~~~~~~~~l~~~i~~~~~V~~~~~~~~~~~w~V~~~~G~~~~ad~lV~AtG~~s~p~~  151 (545)
T 3uox_A           90 LRYVNRAADAMDVRKHYRFNTRVTAARYVENDRLWEVTLDNEEVVTCRFLISATGPLSASRM  151 (545)
T ss_dssp             HHHHHHHHHHHTCGGGEECSCCEEEEEEEGGGTEEEEEETTTEEEEEEEEEECCCSCBC---
T ss_pred             HHHHHHHHHHcCCcCcEEECCEEEEEEEeCCCCEEEEEECCCCEEEeCEEEECcCCCCCCcC
Confidence              11233455676  7888999999986554444568889999999999999999  55553

>3i6d_A Protoporphyrinogen oxidase; protein-inhibitor complex, cytoplasm, FAD, flavoprotein, oxidoreductase, porphyrin biosynthesis; HET: FAD ACJ; 2.90A {Bacillus subtilis}

Probab=97.70  E-value=1.5e-05  Score=80.13  Aligned_cols=41  Identities=27%  Similarity=0.519  Sum_probs=34.5

Q ss_pred             cEEEcCCeEEEEEeCCCCcEEEEEcCCCCEEeCCEEEEccCCc
Q 012165          245 VKFVKGASIKNLEAGSDGRVAAVKLEDGSTIDADTIVIGIGAK  287 (469)
Q Consensus       245 V~~~~~~~v~~i~~~~~~~v~~v~~~~g~~i~~D~vi~a~G~~  287 (469)
                      +++++++.|++|+..+++ + .|.+.+|+++.+|.||+|++..
T Consensus       248 ~~i~~~~~V~~i~~~~~~-~-~v~~~~g~~~~ad~vi~a~p~~  288 (470)
T 3i6d_A          248 TKVYKGTKVTKLSHSGSC-Y-SLELDNGVTLDADSVIVTAPHK  288 (470)
T ss_dssp             EEEECSCCEEEEEECSSS-E-EEEESSSCEEEESEEEECSCHH
T ss_pred             CEEEeCCceEEEEEcCCe-E-EEEECCCCEEECCEEEECCCHH
Confidence            699999999999876444 3 5888999899999999998753

>1qo8_A Flavocytochrome C3 fumarate reductase; oxidoreductase; HET: HEM FAD; 2.15A {Shewanella frigidimarina} SCOP: a.138.1.3 c.3.1.4 d.168.1.1

Probab=97.70  E-value=8.3e-05  Score=76.86  Aligned_cols=50  Identities=16%  Similarity=0.265  Sum_probs=39.0

Q ss_pred             HHHcCcEEEcCCeEEEEEeCCCCcEEEEEcC--CCC--EEeCCEEEEccCCccC
Q 012165          240 YQQNGVKFVKGASIKNLEAGSDGRVAAVKLE--DGS--TIDADTIVIGIGAKPT  289 (469)
Q Consensus       240 l~~~gV~~~~~~~v~~i~~~~~~~v~~v~~~--~g~--~i~~D~vi~a~G~~p~  289 (469)
                      +++.||++++++.++++..++++++.+|.+.  +|+  .+.+|.||+|+|....
T Consensus       260 ~~~~gv~i~~~~~v~~l~~~~~g~v~Gv~~~~~~g~~~~i~A~~VVlAtGg~s~  313 (566)
T 1qo8_A          260 AKEQGIDTRLNSRVVKLVVNDDHSVVGAVVHGKHTGYYMIGAKSVVLATGGYGM  313 (566)
T ss_dssp             HHHTTCCEECSEEEEEEEECTTSBEEEEEEEETTTEEEEEEEEEEEECCCCCTT
T ss_pred             HHhcCCEEEeCCEEEEEEECCCCcEEEEEEEeCCCcEEEEEcCEEEEecCCccc
Confidence            3457899999999999986533777777665  675  6899999999997553

>2x8g_A Thioredoxin glutathione reductase; redox-active center, detoxification pathway, oxidoreductase, flavoprotein; HET: FAD PG4; 1.90A {Schistosoma mansoni} PDB: 2x8c_A* 2x8h_A* 2x99_A* 3h4k_A* 2v6o_A*

Probab=97.69  E-value=6e-05  Score=78.48  Aligned_cols=97  Identities=11%  Similarity=0.205  Sum_probs=66.5

Q ss_pred             CCCcEEEEcCcHHHHHHHHHHHHcCCCCCcEEEEcCCCCCCCCCCCCcccccCCCCCCCCCCCCCccccCCCCCCCCHhH
Q 012165           50 ENREFVIVGGGNAAGYAARTFVEHGMADGRLCIVSKEAYAPYERPALTKGYLFPLDKKPARLPGFHTCVGSGGERQTPEW  129 (469)
Q Consensus        50 ~~~~vvIIGgG~AGl~aA~~L~~~g~~~~~V~vie~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  129 (469)
                      ..++++|||||..|+.+|..|++.|.   +|+++++....    +.+..           .+           .....+.
T Consensus       285 ~~~~vvViGgG~~g~E~A~~l~~~g~---~Vtlv~~~~~l----~~~d~-----------~~-----------~~~~~~~  335 (598)
T 2x8g_A          285 FPGKTLVIGASYVALECAGFLASLGG---DVTVMVRSILL----RGFDQ-----------QM-----------AEKVGDY  335 (598)
T ss_dssp             CCCSEEEECCSHHHHHHHHHHHHTTC---CEEEEESSCSS----TTSCH-----------HH-----------HHHHHHH
T ss_pred             CCCEEEEECCCHHHHHHHHHHHHcCC---EEEEEECCcCc----CcCCH-----------HH-----------HHHHHHH
Confidence            34689999999999999999999986   79999865211    10000           00           0123456


Q ss_pred             HHHCCcEEEeCCcEEEEeC-------C--CcE--EE--eCCCeEEE--eccEEeccCCCCC
Q 012165          130 YKEKGIEMIYQDPVTSIDI-------E--KQT--LI--TNSGKLLK--YGSLIVATGCTAS  175 (469)
Q Consensus       130 ~~~~~i~~~~~~~v~~id~-------~--~~~--v~--~~~g~~~~--yd~lVlAtG~~~~  175 (469)
                      +++.||+++.++.+..+..       .  ...  +.  ..+|+++.  +|.||+|+|.+|.
T Consensus       336 l~~~gv~i~~~~~v~~v~~~~~~~~~~~~~~~~~v~~~~~~g~~~~~~~D~vi~a~G~~p~  396 (598)
T 2x8g_A          336 MENHGVKFAKLCVPDEIKQLKVVDTENNKPGLLLVKGHYTDGKKFEEEFETVIFAVGREPQ  396 (598)
T ss_dssp             HHHTTCEEEETEEEEEEEEEECCBTTTTBCCEEEEEEEETTSCEEEEEESEEEECSCEEEC
T ss_pred             HHhCCCEEEECCeEEEEEeccccccccCCCceEEEEEEeCCCcEEeccCCEEEEEeCCccc
Confidence            7788999999877776632       1  122  32  35776555  9999999998875

>3k30_A Histamine dehydrogenase; 6-S-cysteinyl-FMN, ADP binding site, oxidoreductase; HET: FMN ADP; 2.70A {Pimelobacter simplex}

Probab=97.69  E-value=3.5e-05  Score=81.67  Aligned_cols=99  Identities=13%  Similarity=0.184  Sum_probs=73.1

Q ss_pred             CCCcEEEEc--CcHHHHHHHHHHHHcCCCCCcEEEEcCCCCCCCCCCCCcccccCCCCCCCCCCCCCccccCCCCCCCCH
Q 012165           50 ENREFVIVG--GGNAAGYAARTFVEHGMADGRLCIVSKEAYAPYERPALTKGYLFPLDKKPARLPGFHTCVGSGGERQTP  127 (469)
Q Consensus        50 ~~~~vvIIG--gG~AGl~aA~~L~~~g~~~~~V~vie~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  127 (469)
                      ..++|+|||  +|..|+.+|..|++.|.   +|++++..+...       . ....     ...           .....
T Consensus       522 ~g~~VvViG~ggG~~g~e~A~~L~~~g~---~Vtlv~~~~~l~-------~-~~~~-----~~~-----------~~~l~  574 (690)
T 3k30_A          522 DGKKVVVYDDDHYYLGGVVAELLAQKGY---EVSIVTPGAQVS-------S-WTNN-----TFE-----------VNRIQ  574 (690)
T ss_dssp             SSSEEEEEECSCSSHHHHHHHHHHHTTC---EEEEEESSSSTT-------G-GGGG-----GTC-----------HHHHH
T ss_pred             CCCEEEEEcCCCCccHHHHHHHHHhCCC---eeEEEecccccc-------c-cccc-----chh-----------HHHHH
Confidence            446799999  99999999999999986   899998765421       0 0000     000           11245


Q ss_pred             hHHHHCCcEEEeCCcEEEEeCCCcEEEe---CCCeEEEeccEEeccCCCCC
Q 012165          128 EWYKEKGIEMIYQDPVTSIDIEKQTLIT---NSGKLLKYGSLIVATGCTAS  175 (469)
Q Consensus       128 ~~~~~~~i~~~~~~~v~~id~~~~~v~~---~~g~~~~yd~lVlAtG~~~~  175 (469)
                      +.+++.|++++.+++|.+++.++..+..   .+++++++|.||+|+|.+|.
T Consensus       575 ~~l~~~GV~i~~~~~V~~i~~~~~~v~~~~~~~~~~i~aD~VV~A~G~~p~  625 (690)
T 3k30_A          575 RRLIENGVARVTDHAVVAVGAGGVTVRDTYASIERELECDAVVMVTARLPR  625 (690)
T ss_dssp             HHHHHTTCEEEESEEEEEEETTEEEEEETTTCCEEEEECSEEEEESCEEEC
T ss_pred             HHHHHCCCEEEcCcEEEEEECCeEEEEEccCCeEEEEECCEEEECCCCCCC
Confidence            6678899999999999999877655553   25567999999999998764

>3ihm_A Styrene monooxygenase A; rossman fold, anti-parallel beta strands, dimer, cavity, oxidoreductase; 2.30A {Pseudomonas putida}

Probab=97.65  E-value=2.9e-05  Score=77.40  Aligned_cols=36  Identities=17%  Similarity=0.261  Sum_probs=31.5

Q ss_pred             CCCCcEEEEcCcHHHHHHHHHHHHcCCCCCcEEEEcCCC
Q 012165           49 NENREFVIVGGGNAAGYAARTFVEHGMADGRLCIVSKEA   87 (469)
Q Consensus        49 ~~~~~vvIIGgG~AGl~aA~~L~~~g~~~~~V~vie~~~   87 (469)
                      .+++||+|||||++|+++|..|+++|+   +|+|+|+.+
T Consensus        20 ~m~~~ViIVGaGpaGl~~A~~La~~G~---~V~viE~~~   55 (430)
T 3ihm_A           20 HMKKRIGIVGAGTAGLHLGLFLRQHDV---DVTVYTDRK   55 (430)
T ss_dssp             ---CEEEEECCHHHHHHHHHHHHHTTC---EEEEEESCC
T ss_pred             cCCCCEEEECCcHHHHHHHHHHHHCCC---eEEEEcCCC
Confidence            355899999999999999999999998   899999876

>3i3l_A Alkylhalidase CMLS; flavin-dependent halogenase, chloramphenicol biosynthesis, halogenation reaction, structural genomics; HET: FAD; 2.20A {Streptomyces venezuelae}

Probab=97.63  E-value=0.00015  Score=75.05  Aligned_cols=81  Identities=17%  Similarity=0.282  Sum_probs=66.8

Q ss_pred             CCeEEEEcCChHHHHHHHHHHhCCCeEe----------------------------------------------------
Q 012165          207 AKKVVVVGGGYIGMEVAAAAVGWKLDTT----------------------------------------------------  234 (469)
Q Consensus       207 ~~~vvVvG~G~~g~e~A~~l~~~g~~v~----------------------------------------------------  234 (469)
                      ..+|+|||||+.|+-+|..|++.|.+|+                                                    
T Consensus        23 ~~DVvIVGgG~AGl~aA~~Lar~G~~V~LiEr~~~~~~~~G~~l~p~~~~~l~~lGl~~~l~~~~~~~~~~~~~~~~~~~  102 (591)
T 3i3l_A           23 RSKVAIIGGGPAGSVAGLTLHKLGHDVTIYERSAFPRYRVGESLLPGTMSILNRLGLQEKIDAQNYVKKPSATFLWGQDQ  102 (591)
T ss_dssp             CCEEEEECCSHHHHHHHHHHHHTTCEEEEECSSCSSCCCCCCBCCHHHHHHHHHTTCHHHHHHHCCEEECEEEEECSSSC
T ss_pred             CCCEEEECcCHHHHHHHHHHHcCCCCEEEEcCCCCCCCceeeeECHHHHHHHHHcCCcHHHHhcCCcccCCcEEEecCCC
Confidence            4789999999999999999999998876                                                    


Q ss_pred             ------------------------------eeHHHHHHcCcEEEcCCeEEEEEeCCCCcEEEEEcC-CC--CEEeCCEEE
Q 012165          235 ------------------------------RYEQLYQQNGVKFVKGASIKNLEAGSDGRVAAVKLE-DG--STIDADTIV  281 (469)
Q Consensus       235 ------------------------------~~~~~l~~~gV~~~~~~~v~~i~~~~~~~v~~v~~~-~g--~~i~~D~vi  281 (469)
                                                    .+.+.+++.|++++.+++|+++... ++.+..|.+. +|  +++.+|+||
T Consensus       103 ~~~~~~~~~~~~~~~~~~~~~~v~r~~l~~~L~~~a~~~Gv~i~~g~~V~~v~~~-~g~~~~V~~~~~G~~~~i~AdlVV  181 (591)
T 3i3l_A          103 APWTFSFAAPKVAPWVFDHAVQVKREEFDKLLLDEARSRGITVHEETPVTDVDLS-DPDRVVLTVRRGGESVTVESDFVI  181 (591)
T ss_dssp             CCEEEECCCC--CTTCCSCEEECCHHHHHHHHHHHHHHTTCEEETTCCEEEEECC-STTCEEEEEEETTEEEEEEESEEE
T ss_pred             ccceeecccccccccccCeeEEEcHHHHHHHHHHHHHhCCCEEEeCCEEEEEEEc-CCCEEEEEEecCCceEEEEcCEEE
Confidence                                          1234556789999999999999854 3444567776 67  579999999


Q ss_pred             EccCCcc
Q 012165          282 IGIGAKP  288 (469)
Q Consensus       282 ~a~G~~p  288 (469)
                      .|+|...
T Consensus       182 ~AdG~~S  188 (591)
T 3i3l_A          182 DAGGSGG  188 (591)
T ss_dssp             ECCGGGC
T ss_pred             ECCCCcc
Confidence            9999865

>1c0p_A D-amino acid oxidase; alpha-beta-alpha motif, flavin containing protein, oxidoreductase; HET: FAD; 1.20A {Rhodosporidium toruloides} SCOP: c.4.1.2 d.16.1.3 PDB: 1c0i_A* 1c0l_A* 1c0k_A*

Probab=97.63  E-value=4.3e-05  Score=74.24  Aligned_cols=36  Identities=17%  Similarity=0.372  Sum_probs=32.9

Q ss_pred             CCCCcEEEEcCcHHHHHHHHHHHHcCCCCCcEEEEcCCC
Q 012165           49 NENREFVIVGGGNAAGYAARTFVEHGMADGRLCIVSKEA   87 (469)
Q Consensus        49 ~~~~~vvIIGgG~AGl~aA~~L~~~g~~~~~V~vie~~~   87 (469)
                      .+++||+|||||++|+++|.+|+++|.   +|+|+|+..
T Consensus         4 ~~~~dVvVIG~Gi~Gls~A~~La~~G~---~V~vle~~~   39 (363)
T 1c0p_A            4 HSQKRVVVLGSGVIGLSSALILARKGY---SVHILARDL   39 (363)
T ss_dssp             CCSCEEEEECCSHHHHHHHHHHHHTTC---EEEEEESSC
T ss_pred             CCCCCEEEECCCHHHHHHHHHHHhCCC---EEEEEeccC
Confidence            456899999999999999999999987   899999875

>3e1t_A Halogenase; flavoprotein; HET: FAD; 2.05A {Chondromyces crocatus}

Probab=97.62  E-value=0.00021  Score=72.91  Aligned_cols=81  Identities=19%  Similarity=0.203  Sum_probs=65.5

Q ss_pred             CeEEEEcCChHHHHHHHHHHhCCCeEe-----------------------------------------------------
Q 012165          208 KKVVVVGGGYIGMEVAAAAVGWKLDTT-----------------------------------------------------  234 (469)
Q Consensus       208 ~~vvVvG~G~~g~e~A~~l~~~g~~v~-----------------------------------------------------  234 (469)
                      .+|+|||+|+.|+-+|..|++.|.+|+                                                     
T Consensus         8 ~dVvIVGgG~aGl~aA~~La~~G~~V~liE~~~~~~~~~g~~~~~~~~~~~l~~lgl~~~~~~~~~~~~~~~~~~~~~~~   87 (512)
T 3e1t_A            8 FDLIVIGGGPGGSTLASFVAMRGHRVLLLEREAFPRHQIGESLLPATVHGICAMLGLTDEMKRAGFPIKRGGTFRWGKEP   87 (512)
T ss_dssp             EEEEEECCSHHHHHHHHHHHTTTCCEEEECSSCSSCCCSCCBCCHHHHTTHHHHTTCHHHHHTTTCCEECEEEEECSSCS
T ss_pred             CCEEEECcCHHHHHHHHHHHhCCCCEEEEccCCCCCCCCCcccCcchHHHHHHHhCcHHHHHHcCCccccCceEEecCCc
Confidence            479999999999999999999998886                                                     


Q ss_pred             ----------------------------eeHHHHHHcCcEEEcCCeEEEEEeCCCCcEEEE--EcCCCC--EEeCCEEEE
Q 012165          235 ----------------------------RYEQLYQQNGVKFVKGASIKNLEAGSDGRVAAV--KLEDGS--TIDADTIVI  282 (469)
Q Consensus       235 ----------------------------~~~~~l~~~gV~~~~~~~v~~i~~~~~~~v~~v--~~~~g~--~i~~D~vi~  282 (469)
                                                  .+.+.+++.|++++.+++|+++..+ ++.+.+|  ...+|+  ++.+|+||.
T Consensus        88 ~~~~~~~~~~~~~~~~~~~~v~r~~l~~~L~~~a~~~Gv~i~~~~~V~~v~~~-~~~v~gv~~~~~dG~~~~i~ad~VI~  166 (512)
T 3e1t_A           88 EPWTFGFTRHPDDPYGFAYQVERARFDDMLLRNSERKGVDVRERHEVIDVLFE-GERAVGVRYRNTEGVELMAHARFIVD  166 (512)
T ss_dssp             SCEEEESSSSSSSTTCCEEBCCHHHHHHHHHHHHHHTTCEEESSCEEEEEEEE-TTEEEEEEEECSSSCEEEEEEEEEEE
T ss_pred             cccccccccCCCCCcceeeEecHHHHHHHHHHHHHhCCCEEEcCCEEEEEEEE-CCEEEEEEEEeCCCCEEEEEcCEEEE
Confidence                                        2344556689999999999999864 5555444  445674  799999999


Q ss_pred             ccCCccC
Q 012165          283 GIGAKPT  289 (469)
Q Consensus       283 a~G~~p~  289 (469)
                      |+|....
T Consensus       167 AdG~~S~  173 (512)
T 3e1t_A          167 ASGNRTR  173 (512)
T ss_dssp             CCCTTCS
T ss_pred             CCCcchH
Confidence            9998753

>1k0i_A P-hydroxybenzoate hydroxylase; PHBH, FAD, P-OHB, hydrolase; HET: FAD PHB; 1.80A {Pseudomonas aeruginosa} SCOP: c.3.1.2 d.16.1.2 PDB: 1k0j_A* 1k0l_A* 1doc_A* 1d7l_A* 1dod_A* 1doe_A* 1ius_A* 1iut_A* 1iuu_A* 1iuv_A* 1iuw_A* 1iux_A* 1pxb_A* 1pxc_A* 1dob_A* 1ykj_A* 1pxa_A* 1pbe_A* 1pdh_A* 1phh_A* ...

Probab=97.62  E-value=0.00017  Score=70.75  Aligned_cols=82  Identities=21%  Similarity=0.207  Sum_probs=63.8

Q ss_pred             CeEEEEcCChHHHHHHHHHHhCCCeEe-----------------------------------------------------
Q 012165          208 KKVVVVGGGYIGMEVAAAAVGWKLDTT-----------------------------------------------------  234 (469)
Q Consensus       208 ~~vvVvG~G~~g~e~A~~l~~~g~~v~-----------------------------------------------------  234 (469)
                      .+|+|||+|+.|+.+|..|++.|.+|+                                                     
T Consensus         3 ~dV~IvGaG~aGl~~A~~L~~~G~~v~v~E~~~~~~~~~~~~~g~l~~~~~~~l~~lg~~~~~~~~~~~~~~~~~~~~~~   82 (394)
T 1k0i_A            3 TQVAIIGAGPSGLLLGQLLHKAGIDNVILERQTPDYVLGRIRAGVLEQGMVDLLREAGVDRRMARDGLVHEGVEIAFAGQ   82 (394)
T ss_dssp             CSEEEECCSHHHHHHHHHHHHHTCCEEEECSSCHHHHHTCCCCCEECHHHHHHHHHTTCCHHHHHHCEEESCEEEEETTE
T ss_pred             ccEEEECCCHHHHHHHHHHHHCCCCEEEEeCCCCCcccCCCceEeECHHHHHHHHHcCCcHHHHhcCCccceEEEEECCc
Confidence            369999999999999999998887776                                                     


Q ss_pred             -------------------------eeHHHHHHcCcEEEcCCeEEEEEeCCCCcEEEEEc-CCCC--EEeCCEEEEccCC
Q 012165          235 -------------------------RYEQLYQQNGVKFVKGASIKNLEAGSDGRVAAVKL-EDGS--TIDADTIVIGIGA  286 (469)
Q Consensus       235 -------------------------~~~~~l~~~gV~~~~~~~v~~i~~~~~~~v~~v~~-~~g~--~i~~D~vi~a~G~  286 (469)
                                               .+.+.+.+.|+++++++++++++.++++.+ .|++ .+|+  ++.+|+||.|.|.
T Consensus        83 ~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~~~~g~~i~~~~~v~~i~~~~~~~~-~v~~~~~g~~~~~~a~~vV~AdG~  161 (394)
T 1k0i_A           83 RRRIDLKRLSGGKTVTVYGQTEVTRDLMEAREACGATTVYQAAEVRLHDLQGERP-YVTFERDGERLRLDCDYIAGCDGF  161 (394)
T ss_dssp             EEEECHHHHHTSCCEEECCHHHHHHHHHHHHHHTTCEEESSCEEEEEECTTSSSC-EEEEEETTEEEEEECSEEEECCCT
T ss_pred             eEEeccccccCCCceEEechHHHHHHHHHHHHhcCCeEEeceeEEEEEEecCCce-EEEEecCCcEEEEEeCEEEECCCC
Confidence                                     112233456999999999999986433333 4666 6886  7999999999999


Q ss_pred             ccCC
Q 012165          287 KPTV  290 (469)
Q Consensus       287 ~p~~  290 (469)
                      ....
T Consensus       162 ~S~v  165 (394)
T 1k0i_A          162 HGIS  165 (394)
T ss_dssp             TCST
T ss_pred             CcHH
Confidence            8754

>3nks_A Protoporphyrinogen oxidase; FAD containing protein, PPO, variegate porphyria disease, VP oxidoreductase-oxidoreductase inhibitor complex; HET: ACJ FAD; 1.90A {Homo sapiens}

Probab=97.60  E-value=4.8e-05  Score=76.76  Aligned_cols=51  Identities=27%  Similarity=0.465  Sum_probs=39.3

Q ss_pred             eeHHHHHHcCcEEEcCCeEEEEEeCCCCcEEEEEcCCCCEEeCCEEEEccCCc
Q 012165          235 RYEQLYQQNGVKFVKGASIKNLEAGSDGRVAAVKLEDGSTIDADTIVIGIGAK  287 (469)
Q Consensus       235 ~~~~~l~~~gV~~~~~~~v~~i~~~~~~~v~~v~~~~g~~i~~D~vi~a~G~~  287 (469)
                      .+.+.+++.|+++++++.|++|+..+++.+ .|.+ ++.++.+|.||++++..
T Consensus       239 ~l~~~l~~~g~~i~~~~~V~~i~~~~~~~~-~v~~-~~~~~~ad~vv~a~p~~  289 (477)
T 3nks_A          239 ALETHLTSRGVSVLRGQPVCGLSLQAEGRW-KVSL-RDSSLEADHVISAIPAS  289 (477)
T ss_dssp             HHHHHHHHTTCEEECSCCCCEEEECGGGCE-EEEC-SSCEEEESEEEECSCHH
T ss_pred             HHHHHHHhcCCEEEeCCEEEEEEEcCCceE-EEEE-CCeEEEcCEEEECCCHH
Confidence            456677788999999999999986544323 5665 55589999999998753

>2b9w_A Putative aminooxidase; isomerase, conjugated linoleic acid, FAD; HET: FAD 12P; 1.95A {Propionibacterium acnes} PDB: 2b9x_A* 2b9y_A* 2ba9_A* 2bab_A* 2bac_A*

Probab=97.60  E-value=6.3e-05  Score=74.68  Aligned_cols=40  Identities=18%  Similarity=0.228  Sum_probs=35.1

Q ss_pred             CCCCcEEEEcCcHHHHHHHHHHHHcC-CCCCcEEEEcCCCCCCC
Q 012165           49 NENREFVIVGGGNAAGYAARTFVEHG-MADGRLCIVSKEAYAPY   91 (469)
Q Consensus        49 ~~~~~vvIIGgG~AGl~aA~~L~~~g-~~~~~V~vie~~~~~~~   91 (469)
                      ++++||+|||||++||+||..|++.| +   +|+|+|+++..+.
T Consensus         4 ~~~~~v~IIGaG~aGl~aA~~L~~~g~~---~v~v~E~~~~~GG   44 (424)
T 2b9w_A            4 SKDSRIAIIGAGPAGLAAGMYLEQAGFH---DYTILERTDHVGG   44 (424)
T ss_dssp             CTTCCEEEECCSHHHHHHHHHHHHTTCC---CEEEECSSSCSST
T ss_pred             CCCCCEEEECcCHHHHHHHHHHHhCCCC---cEEEEECCCCCCC
Confidence            34679999999999999999999998 6   7999999887643

>2e1m_A L-glutamate oxidase; L-amino acid oxidase, FAD, L-GOX, flavo oxidoreductase; HET: FAD; 2.80A {Streptomyces SP}

Probab=97.56  E-value=7.5e-05  Score=72.56  Aligned_cols=42  Identities=19%  Similarity=0.241  Sum_probs=36.0

Q ss_pred             cCCCCCCcEEEEcCcHHHHHHHHHHHHcCCCCCcEEEEcCC-CCCC
Q 012165           46 SFANENREFVIVGGGNAAGYAARTFVEHGMADGRLCIVSKE-AYAP   90 (469)
Q Consensus        46 ~~~~~~~~vvIIGgG~AGl~aA~~L~~~g~~~~~V~vie~~-~~~~   90 (469)
                      +.....+||+|||||++||+||..|++.|+   +|+|+|++ +..+
T Consensus        39 ~~~~~~~~V~IIGAGiaGL~aA~~L~~~G~---~V~VlE~~~~~vG   81 (376)
T 2e1m_A           39 NPPGPPKRILIVGAGIAGLVAGDLLTRAGH---DVTILEANANRVG   81 (376)
T ss_dssp             SSCCSCCEEEEECCBHHHHHHHHHHHHTSC---EEEEECSCSSCCB
T ss_pred             CCCCCCceEEEECCCHHHHHHHHHHHHCCC---cEEEEeccccccC
Confidence            334567899999999999999999999987   89999998 6543

>1ps9_A 2,4-dienoyl-COA reductase; iron-sulfur, TIM barrel, flavodoxin, flavin, electron transfer, hydride transfer, oxidoreductase; HET: FAD FMN NAP MDE; 2.20A {Escherichia coli} SCOP: c.1.4.1 c.3.1.1 c.4.1.1

Probab=97.56  E-value=0.00012  Score=77.28  Aligned_cols=48  Identities=17%  Similarity=0.302  Sum_probs=37.8

Q ss_pred             HhHHHHCCcEEEeCCcEEEEeCCCcEEEeCCC--eEEEeccEEeccCCCCC
Q 012165          127 PEWYKEKGIEMIYQDPVTSIDIEKQTLITNSG--KLLKYGSLIVATGCTAS  175 (469)
Q Consensus       127 ~~~~~~~~i~~~~~~~v~~id~~~~~v~~~~g--~~~~yd~lVlAtG~~~~  175 (469)
                      .+.+++.||+++.++++.+++.+...+. .+|  +++++|.||+|+|.+|.
T Consensus       580 ~~~l~~~GV~v~~~~~v~~i~~~~v~~~-~~G~~~~i~~D~Vi~a~G~~p~  629 (671)
T 1ps9_A          580 RTTLLSRGVKMIPGVSYQKIDDDGLHVV-INGETQVLAVDNVVICAGQEPN  629 (671)
T ss_dssp             HHHHHHTTCEEECSCEEEEEETTEEEEE-ETTEEEEECCSEEEECCCEEEC
T ss_pred             HHHHHhcCCEEEeCcEEEEEeCCeEEEe-cCCeEEEEeCCEEEECCCcccc
Confidence            4567889999999999999986542332 566  57999999999998764

>2bcg_G Secretory pathway GDP dissociation inhibitor; RABGTPase, geranylgeranylation, vesicular transport, protein transport; HET: GDP GER; 1.48A {Saccharomyces cerevisiae} SCOP: c.3.1.3 c.3.1.3 d.16.1.6 PDB: 1ukv_G* 3cpi_G 3cph_G 3cpj_G*

Probab=97.55  E-value=7.2e-05  Score=75.06  Aligned_cols=54  Identities=17%  Similarity=0.214  Sum_probs=43.4

Q ss_pred             eeHHHHHHcCcEEEcCCeEEEEEeCC-CCcEEEEEcCCCCEEeCCEEEEccCCccC
Q 012165          235 RYEQLYQQNGVKFVKGASIKNLEAGS-DGRVAAVKLEDGSTIDADTIVIGIGAKPT  289 (469)
Q Consensus       235 ~~~~~l~~~gV~~~~~~~v~~i~~~~-~~~v~~v~~~~g~~i~~D~vi~a~G~~p~  289 (469)
                      .+.+.+++.|+++++++.|++|...+ ++++..|.+ +|+++.+|.||+++|..+.
T Consensus       247 al~~~~~~~G~~i~~~~~V~~i~~~~~~~~~~~V~~-~g~~~~ad~VV~a~~~~~~  301 (453)
T 2bcg_G          247 GFARLSAIYGGTYMLDTPIDEVLYKKDTGKFEGVKT-KLGTFKAPLVIADPTYFPE  301 (453)
T ss_dssp             HHHHHHHHTTCEEECSCCCCEEEEETTTTEEEEEEE-TTEEEECSCEEECGGGCGG
T ss_pred             HHHHHHHHcCCEEECCCEEEEEEEECCCCeEEEEEE-CCeEEECCEEEECCCccch
Confidence            45666788899999999999998642 566666776 5788999999999998764

>1rsg_A FMS1 protein; FAD binding motif, oxidoreductase; HET: FAD; 1.90A {Saccharomyces cerevisiae} PDB: 1z6l_A* 3bi2_A* 3bi4_A* 3bi5_A* 3bnm_B* 3bnu_B* 3cn8_B* 3cnd_B* 3cnp_B* 3cns_A* 3cnt_B* 1yy5_A* 1xpq_A*

Probab=97.55  E-value=4.1e-05  Score=78.21  Aligned_cols=40  Identities=20%  Similarity=0.262  Sum_probs=35.2

Q ss_pred             CCCCcEEEEcCcHHHHHHHHHHHHcC-CCCCcEEEEcCCCCCCC
Q 012165           49 NENREFVIVGGGNAAGYAARTFVEHG-MADGRLCIVSKEAYAPY   91 (469)
Q Consensus        49 ~~~~~vvIIGgG~AGl~aA~~L~~~g-~~~~~V~vie~~~~~~~   91 (469)
                      ++.+||+|||||+|||+||..|++.| +   +|+|+|+.+..+.
T Consensus         6 ~~~~~VvIIGaG~aGL~AA~~L~~~G~~---~V~VlEa~~riGG   46 (516)
T 1rsg_A            6 PAKKKVIIIGAGIAGLKAASTLHQNGIQ---DCLVLEARDRVGG   46 (516)
T ss_dssp             CEEEEEEEECCBHHHHHHHHHHHHTTCC---SEEEECSSSSSBT
T ss_pred             CCCCcEEEECCCHHHHHHHHHHHhcCCC---CEEEEeCCCCCCC
Confidence            34579999999999999999999998 6   7999999987654

>2zxi_A TRNA uridine 5-carboxymethylaminomethyl modificat MNMG; modification, 5-carboxymethylaminomethyl uridine, WOBB uridine, FAD; HET: FAD; 2.30A {Aquifex aeolicus} PDB: 2zxh_A* 2e57_A*

Probab=97.55  E-value=0.00029  Score=72.64  Aligned_cols=82  Identities=21%  Similarity=0.309  Sum_probs=64.4

Q ss_pred             CCeEEEEcCChHHHHHHHHHHhCCCeEe----------------------------------------------------
Q 012165          207 AKKVVVVGGGYIGMEVAAAAVGWKLDTT----------------------------------------------------  234 (469)
Q Consensus       207 ~~~vvVvG~G~~g~e~A~~l~~~g~~v~----------------------------------------------------  234 (469)
                      .-.|+|||||..|+++|..+++.|.+|.                                                    
T Consensus        27 ~yDVIVIGgG~AGl~AAlalAr~G~kVlLIEk~~~~iG~~~Cnps~GGia~g~lv~eldalgg~~~~~~d~~gi~f~~l~  106 (637)
T 2zxi_A           27 EFDVVVIGGGHAGIEAALAAARMGAKTAMFVLNADTIGQMSCNPAIGGIAKGIVVREIDALGGEMGKAIDQTGIQFKMLN  106 (637)
T ss_dssp             CCSEEEECCSHHHHHHHHHHHHTTCCEEEEESCGGGTTCCCSCSEEECTTHHHHHHHHHHHTCSHHHHHHHHEEEEEEES
T ss_pred             cCCEEEECCCHHHHHHHHHHHHCCCCEEEEEecccccCCcCccccccccchHHHHHHHHHhhhHHHHHhhhcccceeecc
Confidence            3579999999999999999999887665                                                    


Q ss_pred             ---------------------eeHHHHHH-cCcEEEcCCeEEEEEeCCCCcEEEEEcCCCCEEeCCEEEEccCCccCC
Q 012165          235 ---------------------RYEQLYQQ-NGVKFVKGASIKNLEAGSDGRVAAVKLEDGSTIDADTIVIGIGAKPTV  290 (469)
Q Consensus       235 ---------------------~~~~~l~~-~gV~~~~~~~v~~i~~~~~~~v~~v~~~~g~~i~~D~vi~a~G~~p~~  290 (469)
                                           .+.+.+++ .|++++ +..|+++..+ ++.+.+|.+.+|+++.+|.||+|+|..++.
T Consensus       107 ~~kGpav~~~r~~~Dr~~~~~~L~~~Le~~~GVeI~-~~~Vt~L~~e-~g~V~GV~t~dG~~i~AdaVVLATG~~s~~  182 (637)
T 2zxi_A          107 TRKGKAVQSPRAQADKKRYREYMKKVCENQENLYIK-QEEVVDIIVK-NNQVVGVRTNLGVEYKTKAVVVTTGTFLNG  182 (637)
T ss_dssp             TTSCGGGCEEEEEECHHHHHHHHHHHHHTCTTEEEE-ESCEEEEEES-SSBEEEEEETTSCEEECSEEEECCTTCBTC
T ss_pred             cccCccccchhhhCCHHHHHHHHHHHHHhCCCCEEE-EeEEEEEEec-CCEEEEEEECCCcEEEeCEEEEccCCCccC
Confidence                                 01123444 589985 5688888753 667778999999999999999999987653

>2xve_A Flavin-containing monooxygenase; oxidoreductase; HET: FAD; 1.99A {Methylophaga aminisulfidivorans} PDB: 2xvf_A* 2xvh_A* 2xvi_A* 2xvj_A* 2xlt_A* 2vqb_A* 2vq7_A* 2xlu_A* 2xlp_A* 2xls_A* 2xlr_A*

Probab=97.54  E-value=0.00083  Score=67.49  Aligned_cols=84  Identities=19%  Similarity=0.317  Sum_probs=62.6

Q ss_pred             CeEEEEcCChHHHHHHHHHHh---CCCe---Ee------------e----------------------------------
Q 012165          208 KKVVVVGGGYIGMEVAAAAVG---WKLD---TT------------R----------------------------------  235 (469)
Q Consensus       208 ~~vvVvG~G~~g~e~A~~l~~---~g~~---v~------------~----------------------------------  235 (469)
                      ++|+|||+|+.|+.+|..|++   .|.+   ++            .                                  
T Consensus         3 ~~V~IIGaG~aGl~aA~~L~~~~~~G~~~~~V~v~E~~~~~GG~w~~~~~~g~~~~g~~~~~~~y~~l~~~~~~~~~~~~   82 (464)
T 2xve_A            3 TRIAILGAGPSGMAQLRAFQSAQEKGAEIPELVCFEKQADWGGQWNYTWRTGLDENGEPVHSSMYRYLWSNGPKECLEFA   82 (464)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHHHHTTCCCCEEEEECSSSSSCGGGSCCSCCSBCTTSSBCCCCCCTTCBCSSCGGGTCBT
T ss_pred             CcEEEECccHHHHHHHHHHHhhhhcCCCCCcEEEEEcCCCCCCEeecCCCCCccccCCCCcCccccchhhcCChhhcccC
Confidence            589999999999999999999   8888   76            0                                  


Q ss_pred             ------------------------eHHHHHHcCcE--EEcCCeEEEEEeCCCCcEEEEEcCC---C--CEEeCCEEEEcc
Q 012165          236 ------------------------YEQLYQQNGVK--FVKGASIKNLEAGSDGRVAAVKLED---G--STIDADTIVIGI  284 (469)
Q Consensus       236 ------------------------~~~~l~~~gV~--~~~~~~v~~i~~~~~~~v~~v~~~~---g--~~i~~D~vi~a~  284 (469)
                                              +.+.+++.|++  +++++.|+.++..+++....|++.+   |  .++.+|.||+|+
T Consensus        83 ~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~gv~~~i~~~~~V~~v~~~~~~~~~~V~~~~~~~g~~~~~~~d~VVvAt  162 (464)
T 2xve_A           83 DYTFDEHFGKPIASYPPREVLWDYIKGRVEKAGVRKYIRFNTAVRHVEFNEDSQTFTVTVQDHTTDTIYSEEFDYVVCCT  162 (464)
T ss_dssp             TBCHHHHHSSCCCSSCBHHHHHHHHHHHHHHHTCGGGEECSEEEEEEEEETTTTEEEEEEEETTTTEEEEEEESEEEECC
T ss_pred             CCCCCcccCCCCCCCCCHHHHHHHHHHHHHHcCCcceEEeCCEEEEEEEcCCCCcEEEEEEEcCCCceEEEEcCEEEECC
Confidence                                    11233455887  8899999999865442222455544   4  578999999999


Q ss_pred             C--CccCCc
Q 012165          285 G--AKPTVS  291 (469)
Q Consensus       285 G--~~p~~~  291 (469)
                      |  ..|+..
T Consensus       163 G~~s~p~~p  171 (464)
T 2xve_A          163 GHFSTPYVP  171 (464)
T ss_dssp             CSSSSBCCC
T ss_pred             CCCCCCccC
Confidence            9  677654

>2vou_A 2,6-dihydroxypyridine hydroxylase; oxidoreductase, aromatic hydroxylase, nicotine degradation, mono-oxygenase; HET: FAD; 2.6A {Arthrobacter nicotinovorans} SCOP: c.3.1.2 d.16.1.2

Probab=97.53  E-value=0.00035  Score=68.62  Aligned_cols=81  Identities=17%  Similarity=0.317  Sum_probs=63.8

Q ss_pred             CCeEEEEcCChHHHHHHHHHHhCCCeEe--------------------eeHHHHHH------------------------
Q 012165          207 AKKVVVVGGGYIGMEVAAAAVGWKLDTT--------------------RYEQLYQQ------------------------  242 (469)
Q Consensus       207 ~~~vvVvG~G~~g~e~A~~l~~~g~~v~--------------------~~~~~l~~------------------------  242 (469)
                      ..+|+|||+|+.|+.+|..|++.|.+++                    ...+.+++                        
T Consensus         5 ~~~V~IVGaG~aGl~~A~~L~~~G~~v~v~E~~~~~~~~~~~g~~l~~~~~~~l~~~g~~~~~~~~~~~~~~~~~~~~g~   84 (397)
T 2vou_A            5 TDRIAVVGGSISGLTAALMLRDAGVDVDVYERSPQPLSGFGTGIVVQPELVHYLLEQGVELDSISVPSSSMEYVDALTGE   84 (397)
T ss_dssp             CSEEEEECCSHHHHHHHHHHHHTTCEEEEECSSSSSCCCCSCEEECCHHHHHHHHHTTCCGGGTCBCCCEEEEEETTTCC
T ss_pred             CCcEEEECCCHHHHHHHHHHHhCCCCEEEEecCCCCCCccccccccChhHHHHHHHcCCccccccccccceEEEecCCCC
Confidence            4689999999999999999999998887                    00111111                        


Q ss_pred             -------------------------cCcEEEcCCeEEEEEeCCCCcEEEEEcCCCCEEeCCEEEEccCCccC
Q 012165          243 -------------------------NGVKFVKGASIKNLEAGSDGRVAAVKLEDGSTIDADTIVIGIGAKPT  289 (469)
Q Consensus       243 -------------------------~gV~~~~~~~v~~i~~~~~~~v~~v~~~~g~~i~~D~vi~a~G~~p~  289 (469)
                                               .|+++++++++++++.++++ + .+++.+|+++.+|+||.|.|....
T Consensus        85 ~~~~~~~~~~~~~~~~l~~~L~~~~~~~~i~~~~~v~~i~~~~~~-v-~v~~~~g~~~~ad~vV~AdG~~S~  154 (397)
T 2vou_A           85 RVGSVPADWRFTSYDSIYGGLYELFGPERYHTSKCLVGLSQDSET-V-QMRFSDGTKAEANWVIGADGGASV  154 (397)
T ss_dssp             EEEEEECCCCEEEHHHHHHHHHHHHCSTTEETTCCEEEEEECSSC-E-EEEETTSCEEEESEEEECCCTTCH
T ss_pred             ccccccCcccccCHHHHHHHHHHhCCCcEEEcCCEEEEEEecCCE-E-EEEECCCCEEECCEEEECCCcchh
Confidence                                     26788899999999865443 4 478899999999999999998764

>2yg5_A Putrescine oxidase; oxidoreductase, flavin; HET: FAD; 1.90A {Rhodococcus erythropolis} PDB: 2yg6_A* 2yg3_A* 2yg4_A* 2yg7_A* 3rha_A*

Probab=97.52  E-value=4.6e-05  Score=76.42  Aligned_cols=38  Identities=21%  Similarity=0.357  Sum_probs=34.1

Q ss_pred             CCCcEEEEcCcHHHHHHHHHHHHcCCCCCcEEEEcCCCCCC
Q 012165           50 ENREFVIVGGGNAAGYAARTFVEHGMADGRLCIVSKEAYAP   90 (469)
Q Consensus        50 ~~~~vvIIGgG~AGl~aA~~L~~~g~~~~~V~vie~~~~~~   90 (469)
                      .++||+|||||++||+||..|++.|+   +|+|+|+.+..+
T Consensus         4 ~~~~v~iiG~G~~Gl~aA~~l~~~g~---~v~v~E~~~~~G   41 (453)
T 2yg5_A            4 LQRDVAIVGAGPSGLAAATALRKAGL---SVAVIEARDRVG   41 (453)
T ss_dssp             EEEEEEEECCSHHHHHHHHHHHHTTC---CEEEECSSSSSC
T ss_pred             CcCCEEEECCCHHHHHHHHHHHHCCC---cEEEEECCCCCC
Confidence            45799999999999999999999987   799999987654

>3atr_A Conserved archaeal protein; saturating double bonds, archaeal membrane precursor, like 2 geranylgeranylglyceryl phosphate; HET: FDA; 1.80A {Sulfolobus acidocaldarius} PDB: 3atq_A*

Probab=97.52  E-value=0.00025  Score=71.03  Aligned_cols=82  Identities=22%  Similarity=0.250  Sum_probs=63.9

Q ss_pred             CeEEEEcCChHHHHHHHHHHhCCCeEe-----------------------------------------------------
Q 012165          208 KKVVVVGGGYIGMEVAAAAVGWKLDTT-----------------------------------------------------  234 (469)
Q Consensus       208 ~~vvVvG~G~~g~e~A~~l~~~g~~v~-----------------------------------------------------  234 (469)
                      .+|+|||+|+.|+.+|..|++.|.+|.                                                     
T Consensus         7 ~dVvIVGaG~aGl~aA~~La~~G~~V~vlE~~~~~~~g~~~~g~~l~~~~l~~lg~~~~~~~~~~~~~~~~~~~~~~~~~   86 (453)
T 3atr_A            7 YDVLIIGGGFAGSSAAYQLSRRGLKILLVDSKPWNRIGDKPCGDAVSKAHFDKLGMPYPKGEELENKINGIKLYSPDMQT   86 (453)
T ss_dssp             CSEEEECCSHHHHHHHHHHSSSSCCEEEECSSCGGGTTCSCCCCEEEHHHHHHTTCCCCCGGGEEEEEEEEEEECTTSSC
T ss_pred             CCEEEECcCHHHHHHHHHHHHCCCCEEEEECCCCCCCCcccccccccHHHHHHhcCCCCchHHHHhhhcceEEECCCCce
Confidence            479999999999999999998877665                                                     


Q ss_pred             ------------------eeHHHHHHcCcEEEcCCeEEEEEeCCCCcEEEEEcC---CCC--EEeCCEEEEccCCccCC
Q 012165          235 ------------------RYEQLYQQNGVKFVKGASIKNLEAGSDGRVAAVKLE---DGS--TIDADTIVIGIGAKPTV  290 (469)
Q Consensus       235 ------------------~~~~~l~~~gV~~~~~~~v~~i~~~~~~~v~~v~~~---~g~--~i~~D~vi~a~G~~p~~  290 (469)
                                        .+.+.+++.|++++.+++++++..+ ++.+.+|.+.   +|+  ++.+|.||.|.|.....
T Consensus        87 ~~~~~~~~~~i~r~~l~~~L~~~a~~~gv~i~~~~~v~~i~~~-~~~v~gv~~~~~~~G~~~~~~ad~VV~AdG~~s~v  164 (453)
T 3atr_A           87 VWTVNGEGFELNAPLYNQRVLKEAQDRGVEIWDLTTAMKPIFE-DGYVKGAVLFNRRTNEELTVYSKVVVEATGYSRSF  164 (453)
T ss_dssp             EEEEEEEEEEECHHHHHHHHHHHHHHTTCEEESSEEEEEEEEE-TTEEEEEEEEETTTTEEEEEECSEEEECCGGGCTT
T ss_pred             EEeECCCcEEEcHHHHHHHHHHHHHHcCCEEEeCcEEEEEEEE-CCEEEEEEEEEcCCCceEEEEcCEEEECcCCchhh
Confidence                              1123344579999999999999864 4555555554   675  79999999999987653

>1v0j_A UDP-galactopyranose mutase; flavoprotein, isomerase; HET: FAD BCN; 2.25A {Mycobacterium tuberculosis}

Probab=97.52  E-value=8.4e-05  Score=73.26  Aligned_cols=38  Identities=13%  Similarity=0.190  Sum_probs=34.3

Q ss_pred             CCCcEEEEcCcHHHHHHHHHHHHc-CCCCCcEEEEcCCCCCC
Q 012165           50 ENREFVIVGGGNAAGYAARTFVEH-GMADGRLCIVSKEAYAP   90 (469)
Q Consensus        50 ~~~~vvIIGgG~AGl~aA~~L~~~-g~~~~~V~vie~~~~~~   90 (469)
                      .++||+|||||++|++||..|++. |+   +|+|+|+++..+
T Consensus         6 ~~~~v~IiGaG~~Gl~aA~~L~~~~g~---~v~v~E~~~~~G   44 (399)
T 1v0j_A            6 ARFDLFVVGSGFFGLTIAERVATQLDK---RVLVLERRPHIG   44 (399)
T ss_dssp             CSCSEEEECCSHHHHHHHHHHHHHSCC---CEEEECSSSSSS
T ss_pred             ccCCEEEECCCHHHHHHHHHHHHhCCC---CEEEEeCCCCCC
Confidence            368999999999999999999998 77   799999998764

>3ces_A MNMG, tRNA uridine 5-carboxymethylaminomethyl modificat GIDA, GIDA; tRNA modification, FAD binding domain, structural genomics; 2.41A {Escherichia coli} PDB: 3cp2_A 3g05_A

Probab=97.51  E-value=0.00026  Score=73.18  Aligned_cols=80  Identities=21%  Similarity=0.321  Sum_probs=63.5

Q ss_pred             CeEEEEcCChHHHHHHHHHHhCCCeEe-----------------------------------------------------
Q 012165          208 KKVVVVGGGYIGMEVAAAAVGWKLDTT-----------------------------------------------------  234 (469)
Q Consensus       208 ~~vvVvG~G~~g~e~A~~l~~~g~~v~-----------------------------------------------------  234 (469)
                      -.|+|||||..|+++|..+++.|.+|.                                                     
T Consensus        29 yDVIVIGgG~AGl~AAlaLAr~G~kVlLIEk~~~~iG~~~Cnps~ggia~~~lv~ei~algg~~~~~~d~~gi~f~~l~~  108 (651)
T 3ces_A           29 FDVIIIGGGHAGTEAAMAAARMGQQTLLLTHNIDTLGQMSCNPAIGGIGKGHLVKEVDALGGLMAKAIDQAGIQFRILNA  108 (651)
T ss_dssp             EEEEEECCSHHHHHHHHHHHHTTCCEEEEESCGGGTTCCSSSSEEESTTHHHHHHHHHHTTCSHHHHHHHHEEEEEEEST
T ss_pred             CCEEEECChHHHHHHHHHHHhCCCCEEEEeecccccccccccccccchhhHHHHHHHHHhccHHHHHhhhcccchhhhhc
Confidence            479999999999999999999887765                                                     


Q ss_pred             --------------------eeHHHHHH-cCcEEEcCCeEEEEEeCCCCcEEEEEcCCCCEEeCCEEEEccCCccC
Q 012165          235 --------------------RYEQLYQQ-NGVKFVKGASIKNLEAGSDGRVAAVKLEDGSTIDADTIVIGIGAKPT  289 (469)
Q Consensus       235 --------------------~~~~~l~~-~gV~~~~~~~v~~i~~~~~~~v~~v~~~~g~~i~~D~vi~a~G~~p~  289 (469)
                                          .+.+.+++ .|++++ +..++.+..+ ++.+.+|.+.+|.++.+|.||+|+|..+.
T Consensus       109 ~kgpav~~~r~~~Dr~~~~~~L~e~Le~~~GV~I~-~~~V~~L~~e-~g~V~GV~t~dG~~I~Ad~VVLATGt~s~  182 (651)
T 3ces_A          109 SKGPAVRATRAQADRVLYRQAVRTALENQPNLMIF-QQAVEDLIVE-NDRVVGAVTQMGLKFRAKAVVLTVGTFLD  182 (651)
T ss_dssp             TSCGGGCEEEEEECHHHHHHHHHHHHHTCTTEEEE-ECCEEEEEES-SSBEEEEEETTSEEEEEEEEEECCSTTTC
T ss_pred             ccCcccccchhhCCHHHHHHHHHHHHHhCCCCEEE-EEEEEEEEec-CCEEEEEEECCCCEEECCEEEEcCCCCcc
Confidence                                01223444 589985 5689998753 56777889999988999999999998754

>1w4x_A Phenylacetone monooxygenase; baeyer-villiger, FAD; HET: FAD; 1.7A {Thermobifida fusca} SCOP: c.3.1.5 c.3.1.5 PDB: 2ylr_A* 2yls_A* 2ylt_A* 2ym1_A* 2ylw_A* 2ym2_A* 2ylx_A* 2ylz_A*

Probab=97.51  E-value=0.0007  Score=69.49  Aligned_cols=80  Identities=14%  Similarity=0.150  Sum_probs=61.8

Q ss_pred             CeEEEEcCChHHHHHHHHHHhCCCeEe-----------------------------------------------------
Q 012165          208 KKVVVVGGGYIGMEVAAAAVGWKLDTT-----------------------------------------------------  234 (469)
Q Consensus       208 ~~vvVvG~G~~g~e~A~~l~~~g~~v~-----------------------------------------------------  234 (469)
                      .+|+|||+|+.|+.+|..|++.|.++.                                                     
T Consensus        17 ~dVvIIGaG~aGl~aA~~L~~~G~~v~iiE~~~~~GG~w~~~~~pg~~~d~~~~~~~~~f~~~~~~~~~~~~~~~~~~~i   96 (542)
T 1w4x_A           17 VDVLVVGAGFSGLYALYRLRELGRSVHVIETAGDVGGVWYWNRYPGARCDIESIEYCYSFSEEVLQEWNWTERYASQPEI   96 (542)
T ss_dssp             EEEEEECCSHHHHHHHHHHHHTTCCEEEECSSSSSCTHHHHCCCTTCBCSSCTTTSSCCSCHHHHHHCCCCBSSCBHHHH
T ss_pred             CCEEEECccHHHHHHHHHHHhCCCCEEEEeCCCCCCCcccccCCCceeecccccccccccChhhhhccCcccccCCHHHH
Confidence            479999999999999999999887775                                                     


Q ss_pred             --eeHHHHHHcC--cEEEcCCeEEEEEeCCCCcEEEEEcCCCCEEeCCEEEEccCCc
Q 012165          235 --RYEQLYQQNG--VKFVKGASIKNLEAGSDGRVAAVKLEDGSTIDADTIVIGIGAK  287 (469)
Q Consensus       235 --~~~~~l~~~g--V~~~~~~~v~~i~~~~~~~v~~v~~~~g~~i~~D~vi~a~G~~  287 (469)
                        .+....++.+  +.++++++|.+++.++++....|.+++|+++.+|.||+|+|..
T Consensus        97 ~~yl~~~~~~~~l~~~i~~~~~V~~~~~~~~~~~w~V~~~~G~~~~ad~vV~AtG~~  153 (542)
T 1w4x_A           97 LRYINFVADKFDLRSGITFHTTVTAAAFDEATNTWTVDTNHGDRIRARYLIMASGQL  153 (542)
T ss_dssp             HHHHHHHHHHTTGGGGEECSCCEEEEEEETTTTEEEEEETTCCEEEEEEEEECCCSC
T ss_pred             HHHHHHHHHHcCCCceEEcCcEEEEEEEcCCCCeEEEEECCCCEEEeCEEEECcCCC
Confidence              0111123333  6788999999998655443446888899899999999999963

>3qj4_A Renalase; FAD/NAD(P)-binding rossmann fold superfamily, flavin contain oxidoreductase, monoamine oxidase, NAD, extracellular, oxidoreductase; HET: FAD; 2.50A {Homo sapiens}

Probab=97.50  E-value=0.00031  Score=67.49  Aligned_cols=42  Identities=19%  Similarity=0.246  Sum_probs=35.0

Q ss_pred             cCcEEEcCCeEEEEEeCCCCcEEEEEcCCCCEEeCCEEEEccCC
Q 012165          243 NGVKFVKGASIKNLEAGSDGRVAAVKLEDGSTIDADTIVIGIGA  286 (469)
Q Consensus       243 ~gV~~~~~~~v~~i~~~~~~~v~~v~~~~g~~i~~D~vi~a~G~  286 (469)
                      .|+++++++.|++++.++++ + .|.+.+|+++.+|.||+|++.
T Consensus       122 ~g~~i~~~~~V~~i~~~~~~-~-~v~~~~g~~~~ad~vV~A~p~  163 (342)
T 3qj4_A          122 SGAEVYFRHRVTQINLRDDK-W-EVSKQTGSPEQFDLIVLTMPV  163 (342)
T ss_dssp             HTCEEESSCCEEEEEECSSS-E-EEEESSSCCEEESEEEECSCH
T ss_pred             cCCEEEeCCEEEEEEEcCCE-E-EEEECCCCEEEcCEEEECCCH
Confidence            38999999999999975444 3 478888888999999999874

>4a5l_A Thioredoxin reductase; oxidoreductase, redox metabolism, oxidative stress; HET: NDP FAD; 1.66A {Entamoeba histolytica} PDB: 4a65_A*

Probab=97.48  E-value=0.00029  Score=66.58  Aligned_cols=83  Identities=16%  Similarity=0.247  Sum_probs=61.9

Q ss_pred             CeEEEEcCChHHHHHHHHHHhCCCeEe---------------------------------------eeHHHHHHcCcEEE
Q 012165          208 KKVVVVGGGYIGMEVAAAAVGWKLDTT---------------------------------------RYEQLYQQNGVKFV  248 (469)
Q Consensus       208 ~~vvVvG~G~~g~e~A~~l~~~g~~v~---------------------------------------~~~~~l~~~gV~~~  248 (469)
                      ..|+|||+|+.|+.+|..++++|.++.                                       .+.+.+++.++++.
T Consensus         5 yDvvIIG~GpAGl~AA~~la~~g~~v~liE~~~~gg~~~~G~~~~~~~i~~~~g~~~~i~~~~l~~~~~~~~~~~~~~~~   84 (314)
T 4a5l_A            5 HDVVIIGSGPAAHTAAIYLGRSSLKPVMYEGFMAGGVAAGGQLTTTTIIENFPGFPNGIDGNELMMNMRTQSEKYGTTII   84 (314)
T ss_dssp             EEEEEECCSHHHHHHHHHHHHTTCCCEEECCSSGGGCCTTCGGGGSSEECCSTTCTTCEEHHHHHHHHHHHHHHTTCEEE
T ss_pred             CcEEEECCCHHHHHHHHHHHHCCCCEEEEecCCCCCcccCCCcCChHHhhhccCCcccCCHHHHHHHHHHHHhhcCcEEE
Confidence            369999999999999999999988765                                       12345667788887


Q ss_pred             cCCeEEEEEeCCCCcEEEEEcCCCCEEeCCEEEEccCCccCCchh
Q 012165          249 KGASIKNLEAGSDGRVAAVKLEDGSTIDADTIVIGIGAKPTVSPF  293 (469)
Q Consensus       249 ~~~~v~~i~~~~~~~v~~v~~~~g~~i~~D~vi~a~G~~p~~~~~  293 (469)
                      ... +.......+.  ..+.+.++.++.+|.+|+|||.+|....+
T Consensus        85 ~~~-v~~~~~~~~~--~~~~~~~~~~~~~~~liiATG~~~~~~~i  126 (314)
T 4a5l_A           85 TET-IDHVDFSTQP--FKLFTEEGKEVLTKSVIIATGATAKRMHV  126 (314)
T ss_dssp             CCC-EEEEECSSSS--EEEEETTCCEEEEEEEEECCCEEECCCCC
T ss_pred             EeE-EEEeecCCCc--eEEEECCCeEEEEeEEEEcccccccccCC
Confidence            664 5555533222  24667888999999999999998864433

>3rp8_A Flavoprotein monooxygenase; FAD-binding protein, oxidoreductase; HET: FAD; 1.97A {Klebsiella pneumoniae} PDB: 3rp7_A* 3rp6_A*

Probab=97.47  E-value=0.00028  Score=69.56  Aligned_cols=81  Identities=22%  Similarity=0.333  Sum_probs=64.0

Q ss_pred             cCCeEEEEcCChHHHHHHHHHHhCCCeEe---------------------------------------------------
Q 012165          206 KAKKVVVVGGGYIGMEVAAAAVGWKLDTT---------------------------------------------------  234 (469)
Q Consensus       206 ~~~~vvVvG~G~~g~e~A~~l~~~g~~v~---------------------------------------------------  234 (469)
                      ...+|+|||+|+.|+-+|..|++.|.+|+                                                   
T Consensus        22 ~~~dV~IVGaG~aGl~~A~~La~~G~~V~v~E~~~~~~~~~~~~~l~~~~~~~l~~lg~~~~~~~~~~~~~~~~~~~~~~  101 (407)
T 3rp8_A           22 GHMKAIVIGAGIGGLSAAVALKQSGIDCDVYEAVKEIKPVGAAISVWPNGVKCMAHLGMGDIMETFGGPLRRMAYRDFRS  101 (407)
T ss_dssp             -CCEEEEECCSHHHHHHHHHHHHTTCEEEEEESSSCC----CEEEECHHHHHHHHHTTCHHHHHHHSCCCCEEEEEETTT
T ss_pred             CCCEEEEECCCHHHHHHHHHHHhCCCCEEEEeCCCCCCCcCeeEEECHHHHHHHHHCCCHHHHHhhcCCCcceEEEECCC
Confidence            45689999999999999999999998886                                                   


Q ss_pred             ------------------------------eeHHHHHHcCcEEEcCCeEEEEEeCCCCcEEEEEcCCCCEEeCCEEEEcc
Q 012165          235 ------------------------------RYEQLYQQNGVKFVKGASIKNLEAGSDGRVAAVKLEDGSTIDADTIVIGI  284 (469)
Q Consensus       235 ------------------------------~~~~~l~~~gV~~~~~~~v~~i~~~~~~~v~~v~~~~g~~i~~D~vi~a~  284 (469)
                                                    .+.+.+++  ++++++++|++++.+++ .+ .+++.+|+++.+|+||.|.
T Consensus       102 g~~~~~~~~~~~~~~~~~~~~~i~r~~l~~~L~~~~~~--~~i~~~~~v~~i~~~~~-~v-~v~~~~g~~~~a~~vV~Ad  177 (407)
T 3rp8_A          102 GENMTQFSLAPLIERTGSRPCPVSRAELQREMLDYWGR--DSVQFGKRVTRCEEDAD-GV-TVWFTDGSSASGDLLIAAD  177 (407)
T ss_dssp             CCEEEEEECHHHHHHHSSCCEEEEHHHHHHHHHHHHCG--GGEEESCCEEEEEEETT-EE-EEEETTSCEEEESEEEECC
T ss_pred             CCEeEEecchhhhhhcCCceEEEEHHHHHHHHHHhCCc--CEEEECCEEEEEEecCC-cE-EEEEcCCCEEeeCEEEECC
Confidence                                          11122222  78889999999986543 34 5888999999999999999


Q ss_pred             CCccCC
Q 012165          285 GAKPTV  290 (469)
Q Consensus       285 G~~p~~  290 (469)
                      |.....
T Consensus       178 G~~S~v  183 (407)
T 3rp8_A          178 GSHSAL  183 (407)
T ss_dssp             CTTCSS
T ss_pred             CcChHH
Confidence            987654

>2xag_A Lysine-specific histone demethylase 1; amine oxidase, chromatin regulator, histone inhibitor binding, methylation, nucleosome core, oxidoreductase; HET: FAD TCF; 3.10A {Homo sapiens} PDB: 2xaf_A* 2xah_A* 2xaj_A* 2xaq_A* 2xas_A* 2com_A

Probab=97.47  E-value=4.9e-05  Score=81.66  Aligned_cols=80  Identities=11%  Similarity=-0.007  Sum_probs=53.6

Q ss_pred             ccccccccccccccCCCCcccccc--cCCcccccccccccc-----------cccCCCCCCcEEEEcCcHHHHHHHHHHH
Q 012165            5 SNSLSFKHGLSLWCPQSPSLHRIR--HSSAKNFQRRGFVVA-----------YSSFANENREFVIVGGGNAAGYAARTFV   71 (469)
Q Consensus         5 ~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~-----------~~~~~~~~~~vvIIGgG~AGl~aA~~L~   71 (469)
                      +||...+++..|...|.    |..  .++.+..+.+++...           ..+.....++|+|||||++||++|..|+
T Consensus       223 ~~P~~a~~~~~~~~~~~----r~~~~~p~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~viG~G~aGl~~A~~l~  298 (852)
T 2xag_A          223 DNPKIQLTFEATLQQLE----APYNSDTVLVHRVHSYLERHGLINFGIYKRIKPLPTKKTGKVIIIGSGVSGLAAARQLQ  298 (852)
T ss_dssp             TCTTBCCCHHHHHHHCC----TTTTSCHHHHHHHHHHHHHTTSSSCSSCBCSSCCCSSCCCEEEEECCSHHHHHHHHHHH
T ss_pred             cCCHHHhhHHHHHHhCC----CcccCCcHHHHHHHHHHHHHHHHhcCcccccCCcccCCCCeEEEECCCHHHHHHHHHHH
Confidence            78888877766655443    322  233333333322211           0122345689999999999999999999


Q ss_pred             HcCCCCCcEEEEcCCCCCCC
Q 012165           72 EHGMADGRLCIVSKEAYAPY   91 (469)
Q Consensus        72 ~~g~~~~~V~vie~~~~~~~   91 (469)
                      +.|+   +|+|+|+.+..+.
T Consensus       299 ~~g~---~v~v~E~~~~~GG  315 (852)
T 2xag_A          299 SFGM---DVTLLEARDRVGG  315 (852)
T ss_dssp             HTTC---EEEEECSSSSSCT
T ss_pred             HCCC---cEEEEEecCcCCC
Confidence            9998   7999999876543

>2jae_A L-amino acid oxidase; oxidoreductase, dimerisation mode, hydride transfer mechanism, GR2-family, flavoenzyme, FAD containing; HET: FAD; 1.25A {Rhodococcus opacus} PDB: 2jb1_A* 2jb2_A* 2jb3_A*

Probab=97.46  E-value=0.00011  Score=74.37  Aligned_cols=40  Identities=18%  Similarity=0.311  Sum_probs=35.3

Q ss_pred             CCCCcEEEEcCcHHHHHHHHHHHHcCCCCCcEEEEcCCCCCCC
Q 012165           49 NENREFVIVGGGNAAGYAARTFVEHGMADGRLCIVSKEAYAPY   91 (469)
Q Consensus        49 ~~~~~vvIIGgG~AGl~aA~~L~~~g~~~~~V~vie~~~~~~~   91 (469)
                      .+.+||+|||||+|||+||..|++.|+   +|+|+|+.+..+.
T Consensus         9 ~~~~~v~IIGaG~aGl~aA~~L~~~g~---~v~v~E~~~~~GG   48 (489)
T 2jae_A            9 KGSHSVVVLGGGPAGLCSAFELQKAGY---KVTVLEARTRPGG   48 (489)
T ss_dssp             CSCCEEEEECCSHHHHHHHHHHHHTTC---EEEEECSSSSSCT
T ss_pred             cCCCCEEEECCCHHHHHHHHHHHHCCC---CEEEEeccCCCCC
Confidence            446799999999999999999999987   7999999887643

>2gqf_A Hypothetical protein HI0933; structural genomics, FAD-utilizing protein, flavoprotein, PS protein structure initiative; HET: FAD; 2.70A {Haemophilus influenzae} SCOP: c.3.1.8 e.74.1.1

Probab=97.45  E-value=0.00045  Score=68.03  Aligned_cols=49  Identities=10%  Similarity=0.239  Sum_probs=38.2

Q ss_pred             HHHHcCcEEEcCCeEEEEEeCC---CCcEEEEEcCCCCEEeCCEEEEccCCccC
Q 012165          239 LYQQNGVKFVKGASIKNLEAGS---DGRVAAVKLEDGSTIDADTIVIGIGAKPT  289 (469)
Q Consensus       239 ~l~~~gV~~~~~~~v~~i~~~~---~~~v~~v~~~~g~~i~~D~vi~a~G~~p~  289 (469)
                      .+++.||++++++.++++..++   ++.+ .|.+.+| ++.+|.||+|+|..+.
T Consensus       118 ~~~~~Gv~i~~~~~v~~i~~~~~g~~~~~-~v~~~~g-~i~ad~VVlAtG~~s~  169 (401)
T 2gqf_A          118 ECDKYGAKILLRSEVSQVERIQNDEKVRF-VLQVNST-QWQCKNLIVATGGLSM  169 (401)
T ss_dssp             HHHHHTCEEECSCCEEEEEECCSCSSCCE-EEEETTE-EEEESEEEECCCCSSC
T ss_pred             HHHHCCCEEEeCCEEEEEEcccCcCCCeE-EEEECCC-EEECCEEEECCCCccC
Confidence            3456799999999999998541   2333 5777777 7999999999999874

>3hdq_A UDP-galactopyranose mutase; substrate and inhibitor, isomerase; HET: GDU FAD; 2.36A {Deinococcus radiodurans} PDB: 3hdy_A* 3he3_A* 3mj4_A*

Probab=97.44  E-value=0.00012  Score=71.79  Aligned_cols=40  Identities=25%  Similarity=0.417  Sum_probs=35.2

Q ss_pred             CCCCCcEEEEcCcHHHHHHHHHHHHcCCCCCcEEEEcCCCCCC
Q 012165           48 ANENREFVIVGGGNAAGYAARTFVEHGMADGRLCIVSKEAYAP   90 (469)
Q Consensus        48 ~~~~~~vvIIGgG~AGl~aA~~L~~~g~~~~~V~vie~~~~~~   90 (469)
                      ....+||+|||||++|+++|..|++.|.   +|+|+|+.+..+
T Consensus        26 ~~~~~dv~IIGaG~aGl~aA~~l~~~g~---~v~v~E~~~~~G   65 (397)
T 3hdq_A           26 ESKGFDYLIVGAGFAGSVLAERLASSGQ---RVLIVDRRPHIG   65 (397)
T ss_dssp             CCCCEEEEEECCSHHHHHHHHHHHHTTC---CEEEECSSSSSS
T ss_pred             cCCCCCEEEECccHHHHHHHHHHHHCCC---ceEEEeccCCCC
Confidence            3456899999999999999999999987   799999987654

>1y56_B Sarcosine oxidase; dehydrogenase, protein-protein complex, oxidoreductase; HET: FAD FMN ATP CXS; 2.86A {Pyrococcus horikoshii}

Probab=97.44  E-value=0.00052  Score=66.89  Aligned_cols=49  Identities=18%  Similarity=0.279  Sum_probs=39.4

Q ss_pred             HHHHcCcEEEcCCeEEEEEeCCCCcEEEEEcCCCCEEeCCEEEEccCCccC
Q 012165          239 LYQQNGVKFVKGASIKNLEAGSDGRVAAVKLEDGSTIDADTIVIGIGAKPT  289 (469)
Q Consensus       239 ~l~~~gV~~~~~~~v~~i~~~~~~~v~~v~~~~g~~i~~D~vi~a~G~~p~  289 (469)
                      .+++.|++++.+++|++++.+ ++.+.+|.+.+| ++.+|.||+|+|....
T Consensus       158 ~~~~~Gv~i~~~~~v~~i~~~-~~~v~gv~~~~g-~i~a~~VV~A~G~~s~  206 (382)
T 1y56_B          158 KAKEYGAKLLEYTEVKGFLIE-NNEIKGVKTNKG-IIKTGIVVNATNAWAN  206 (382)
T ss_dssp             HHHHTTCEEECSCCEEEEEES-SSBEEEEEETTE-EEECSEEEECCGGGHH
T ss_pred             HHHHCCCEEECCceEEEEEEE-CCEEEEEEECCc-EEECCEEEECcchhHH
Confidence            345678999999999999865 456656888777 7999999999998753

>3fmw_A Oxygenase; mithramycin, baeyer-villiger, flavin binding protein, oxidoreductase; HET: FAD; 2.89A {Streptomyces argillaceus}

Probab=97.43  E-value=0.00022  Score=73.60  Aligned_cols=79  Identities=22%  Similarity=0.321  Sum_probs=64.3

Q ss_pred             CeEEEEcCChHHHHHHHHHHhCCCeEe-----------------------------------------------------
Q 012165          208 KKVVVVGGGYIGMEVAAAAVGWKLDTT-----------------------------------------------------  234 (469)
Q Consensus       208 ~~vvVvG~G~~g~e~A~~l~~~g~~v~-----------------------------------------------------  234 (469)
                      ..|+|||+|++|+-+|..|++.|.+|.                                                     
T Consensus        50 ~DVvIVGaG~aGL~~A~~La~~G~~V~VlEr~~~~~~~~r~~~l~~~s~~~l~~lGl~~~l~~~~~~~~~~~~~~~~~~~  129 (570)
T 3fmw_A           50 TDVVVVGGGPVGLMLAGELRAGGVGALVLEKLVEPVGHDRAGALHIRTVETLDLRGLLDRFLEGTQVAKGLPFAGIFTQG  129 (570)
T ss_dssp             -CEEEECCSHHHHHHHHHHHHTTCCEEEEBSCSSCCCSSSCCCBCHHHHHHHHTTTCHHHHTTSCCBCSBCCBTTBCTTC
T ss_pred             CCEEEECcCHHHHHHHHHHHHCCCCEEEEcCCCCCCCCceEEEECHHHHHHHHHcCChHHHHhcCcccCCceeCCccccc
Confidence            479999999999999999999998876                                                     


Q ss_pred             -----------------------eeHHHHHHcCcEEEcCCeEEEEEeCCCCcEEEEEc--CCC-CEEeCCEEEEccCCcc
Q 012165          235 -----------------------RYEQLYQQNGVKFVKGASIKNLEAGSDGRVAAVKL--EDG-STIDADTIVIGIGAKP  288 (469)
Q Consensus       235 -----------------------~~~~~l~~~gV~~~~~~~v~~i~~~~~~~v~~v~~--~~g-~~i~~D~vi~a~G~~p  288 (469)
                                             .+.+.+++.|++++.+++|++++.++++.  .|++  .+| +++.+|+||.|.|...
T Consensus       130 ~~~~~~~~~~~~~~~i~~~~l~~~L~~~a~~~gv~i~~~~~v~~l~~~~~~v--~v~~~~~~G~~~~~a~~vV~ADG~~S  207 (570)
T 3fmw_A          130 LDFGLVDTRHPYTGLVPQSRTEALLAEHAREAGAEIPRGHEVTRLRQDAEAV--EVTVAGPSGPYPVRARYGVGCDGGRS  207 (570)
T ss_dssp             CBGGGSCCSCCSBBCCCHHHHHHHHHHHHHHHTEECCBSCEEEECCBCSSCE--EEEEEETTEEEEEEESEEEECSCSSC
T ss_pred             ccccccCCCCCeeEEeCHHHHHHHHHHHHHhCCCEEEeCCEEEEEEEcCCeE--EEEEEeCCCcEEEEeCEEEEcCCCCc
Confidence                                   23445556799999999999998654443  3555  788 7899999999999875

>3lov_A Protoporphyrinogen oxidase; structural genomics, JO center for structural genomics, JCSG, protein structure INI PSI-2; HET: FAD; 2.06A {Exiguobacterium sibiricum}

Probab=97.42  E-value=0.00012  Score=73.92  Aligned_cols=40  Identities=23%  Similarity=0.163  Sum_probs=34.4

Q ss_pred             CCCcEEEEcCcHHHHHHHHHHHHcCCCCCcEEEEcCCCCCC
Q 012165           50 ENREFVIVGGGNAAGYAARTFVEHGMADGRLCIVSKEAYAP   90 (469)
Q Consensus        50 ~~~~vvIIGgG~AGl~aA~~L~~~g~~~~~V~vie~~~~~~   90 (469)
                      +++||+|||||++|+++|.+|++.|. +.+|+|+|+.+..+
T Consensus         3 ~~~~v~IiGaG~~Gl~~A~~L~~~g~-~~~v~v~E~~~~~G   42 (475)
T 3lov_A            3 SSKRLVIVGGGITGLAAAYYAERAFP-DLNITLLEAGERLG   42 (475)
T ss_dssp             CSCEEEEECCBHHHHHHHHHHHHHCT-TSEEEEECSSSSSB
T ss_pred             CcccEEEECCCHHHHHHHHHHHHhCC-CCCEEEEECCCCCC
Confidence            35899999999999999999999982 34899999987653

>4gcm_A TRXR, thioredoxin reductase; FAD/NAD-linked reductases, PYR redox 2 family, structural GE joint center for structural genomics, JCSG; HET: MSE FAD NAP EPE; 1.80A {Staphylococcus aureus subsp}

Probab=97.41  E-value=0.00048  Score=65.13  Aligned_cols=81  Identities=20%  Similarity=0.233  Sum_probs=60.4

Q ss_pred             eEEEEcCChHHHHHHHHHHhCCCeEe---------------------------------eeHHHHHHcCcEEEcCCeEEE
Q 012165          209 KVVVVGGGYIGMEVAAAAVGWKLDTT---------------------------------RYEQLYQQNGVKFVKGASIKN  255 (469)
Q Consensus       209 ~vvVvG~G~~g~e~A~~l~~~g~~v~---------------------------------~~~~~l~~~gV~~~~~~~v~~  255 (469)
                      .|+|||+|+.|+.+|..++++|.+|+                                 .......+.++.+..+.....
T Consensus         8 DvvIIG~GpAGl~aA~~l~~~g~~V~liE~~~~gG~~~~~~~i~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   87 (312)
T 4gcm_A            8 DIAIIGAGPAGMTAAVYASRANLKTVMIERGIPGGQMANTEEVENFPGFEMITGPDLSTKMFEHAKKFGAVYQYGDIKSV   87 (312)
T ss_dssp             EEEEECCSHHHHHHHHHHHHTTCCEEEEESSCTTGGGGGCSCBCCSTTCSSBCHHHHHHHHHHHHHHTTCEEEECCCCEE
T ss_pred             CEEEECCCHHHHHHHHHHHHCCCCEEEEecCCCCCeeecccccCCcCCccccchHHHHHHHHHHHhhccccccceeeeee
Confidence            68999999999999999999998876                                 123445566777777766555


Q ss_pred             EEeCCCCcEEEEEcCCCCEEeCCEEEEccCCccCCchh
Q 012165          256 LEAGSDGRVAAVKLEDGSTIDADTIVIGIGAKPTVSPF  293 (469)
Q Consensus       256 i~~~~~~~v~~v~~~~g~~i~~D~vi~a~G~~p~~~~~  293 (469)
                      .... ..   .+...+++++.+|.+|+|||.+|....+
T Consensus        88 ~~~~-~~---~~~~~~~~~~~~d~liiAtGs~~~~~~i  121 (312)
T 4gcm_A           88 EDKG-EY---KVINFGNKELTAKAVIIATGAEYKKIGV  121 (312)
T ss_dssp             EECS-SC---EEEECSSCEEEEEEEEECCCEEECCCCC
T ss_pred             eeee-cc---eeeccCCeEEEeceeEEcccCccCcCCC
Confidence            5422 22   3455678899999999999998865433

>3ps9_A TRNA 5-methylaminomethyl-2-thiouridine biosynthes bifunctional protein MNMC; rossmann fold, oxidase, methyl transferase, FAD; HET: FAD SAM; 2.54A {Escherichia coli} PDB: 3awi_A*

Probab=97.39  E-value=0.00057  Score=72.18  Aligned_cols=47  Identities=13%  Similarity=0.196  Sum_probs=38.8

Q ss_pred             HHHcCcEEEcCCeEEEEEeCCCCcEEEEEcCCCCEEeCCEEEEccCCcc
Q 012165          240 YQQNGVKFVKGASIKNLEAGSDGRVAAVKLEDGSTIDADTIVIGIGAKP  288 (469)
Q Consensus       240 l~~~gV~~~~~~~v~~i~~~~~~~v~~v~~~~g~~i~~D~vi~a~G~~p  288 (469)
                      +++.|++++++++|+++..++ +.+ .|.+.+|.++.+|.||+|+|...
T Consensus       427 a~~~Gv~i~~~t~V~~l~~~~-~~v-~V~t~~G~~i~Ad~VVlAtG~~s  473 (676)
T 3ps9_A          427 AQQQGLQIYYQYQLQNFSRKD-DCW-LLNFAGDQQATHSVVVLANGHQI  473 (676)
T ss_dssp             HHHTTCEEEESCCEEEEEEET-TEE-EEEETTSCEEEESEEEECCGGGG
T ss_pred             HHhCCCEEEeCCeeeEEEEeC-CeE-EEEECCCCEEECCEEEECCCcch
Confidence            346799999999999998653 444 68888888899999999999864

>3nyc_A D-arginine dehydrogenase; FAD, imino-arginine, oxidoreductas; HET: FAD IAR; 1.06A {Pseudomonas aeruginosa} PDB: 3nye_A* 3nyf_A* 3sm8_A*

Probab=97.38  E-value=0.00032  Score=68.23  Aligned_cols=49  Identities=14%  Similarity=0.083  Sum_probs=39.6

Q ss_pred             HHHHHHcCcEEEcCCeEEEEEeCCCCcEEEEEcCCCCEEeCCEEEEccCCcc
Q 012165          237 EQLYQQNGVKFVKGASIKNLEAGSDGRVAAVKLEDGSTIDADTIVIGIGAKP  288 (469)
Q Consensus       237 ~~~l~~~gV~~~~~~~v~~i~~~~~~~v~~v~~~~g~~i~~D~vi~a~G~~p  288 (469)
                      .+.+++.|++++.++.|++++.+++ . ..|++.+| ++.+|.||+|+|...
T Consensus       161 ~~~a~~~Gv~i~~~~~V~~i~~~~~-~-~~V~t~~g-~i~a~~VV~A~G~~s  209 (381)
T 3nyc_A          161 LRGIRRNQGQVLCNHEALEIRRVDG-A-WEVRCDAG-SYRAAVLVNAAGAWC  209 (381)
T ss_dssp             HHHHHHTTCEEESSCCCCEEEEETT-E-EEEECSSE-EEEESEEEECCGGGH
T ss_pred             HHHHHHCCCEEEcCCEEEEEEEeCC-e-EEEEeCCC-EEEcCEEEECCChhH
Confidence            4556678999999999999986533 3 46888887 899999999999754

>2vdc_G Glutamate synthase [NADPH] small chain; oxidoreductase, amidotransferase, ammonia assimilation, iron, zymogen; HET: OMT FMN AKG FAD; 9.50A {Azospirillum brasilense}

Probab=97.38  E-value=0.00016  Score=72.46  Aligned_cols=96  Identities=19%  Similarity=0.298  Sum_probs=64.5

Q ss_pred             CCCCcEEEEcCcHHHHHHHHHHHHcCCCCCcEEEEcCCCCCCCCCCCCcccccCCCCCCCCCCCCCccccCCCCCCCCHh
Q 012165           49 NENREFVIVGGGNAAGYAARTFVEHGMADGRLCIVSKEAYAPYERPALTKGYLFPLDKKPARLPGFHTCVGSGGERQTPE  128 (469)
Q Consensus        49 ~~~~~vvIIGgG~AGl~aA~~L~~~g~~~~~V~vie~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  128 (469)
                      ...++|+|||||..|+-+|..+.+.|.  .+|+++++.+..+.  |...                           ...+
T Consensus       262 ~~gk~VvVIGgG~~a~d~A~~~~r~Ga--~~Vtiv~r~~~~~~--p~~~---------------------------~e~~  310 (456)
T 2vdc_G          262 AAGKHVVVLGGGDTAMDCVRTAIRQGA--TSVKCLYRRDRKNM--PGSQ---------------------------REVA  310 (456)
T ss_dssp             CCCSEEEEECSSHHHHHHHHHHHHTTC--SEEEEECSSCSTTC--SSCH---------------------------HHHH
T ss_pred             cCCCEEEEECCChhHHHHHHHHHHcCC--CEEEEEEeCCccCC--CCCH---------------------------HHHH
Confidence            346799999999999999999999874  25999977654211  0000                           0124


Q ss_pred             HHHHCCcEEEeCCcEEEEeCCCcE--EEe---------C---------CC--eEEEeccEEeccCCCCC
Q 012165          129 WYKEKGIEMIYQDPVTSIDIEKQT--LIT---------N---------SG--KLLKYGSLIVATGCTAS  175 (469)
Q Consensus       129 ~~~~~~i~~~~~~~v~~id~~~~~--v~~---------~---------~g--~~~~yd~lVlAtG~~~~  175 (469)
                      .+++.|++++.+..+..+..+++.  |.+         .         +|  .++++|.||+|+|..|.
T Consensus       311 ~~~~~Gv~~~~~~~~~~i~~~g~v~~v~~~~~~~~~~d~~G~~~~~~~~g~~~~i~aD~Vi~A~G~~p~  379 (456)
T 2vdc_G          311 HAEEEGVEFIWQAAPEGFTGDTVVTGVRAVRIHLGVADATGRQTPQVIEGSEFTVQADLVIKALGFEPE  379 (456)
T ss_dssp             HHHHTTCEEECCSSSCCEEEEEEEETTEEEEEEEEEEEECTTCCEEEEEEEEEEEECSEEEECSCEECC
T ss_pred             HHHHCCCEEEeCCCceEEeCCCcEEEEEEEEEEecccCCcCCccccccCCcEEEEECCEEEECCCCCCC
Confidence            467789999888777666532210  111         1         22  46899999999998764

>1y0p_A Fumarate reductase flavoprotein subunit; flavocytochrome, mesaconate, oxidoreductase; HET: HEM FAD; 1.50A {Shewanella frigidimarina} SCOP: a.138.1.3 c.3.1.4 d.168.1.1 PDB: 1qjd_A* 2b7s_A* 1jry_A* 2b7r_A* 1ksu_A* 1jrz_A* 1jrx_A* 1m64_A* 1p2h_A* 1p2e_A* 1kss_A* 1e39_A* 1q9i_A* 1lj1_A*

Probab=97.36  E-value=0.00073  Score=69.82  Aligned_cols=48  Identities=10%  Similarity=0.203  Sum_probs=38.2

Q ss_pred             HHcCcEEEcCCeEEEEEeCCCCcEEEEEcC--CCC--EEeCCEEEEccCCcc
Q 012165          241 QQNGVKFVKGASIKNLEAGSDGRVAAVKLE--DGS--TIDADTIVIGIGAKP  288 (469)
Q Consensus       241 ~~~gV~~~~~~~v~~i~~~~~~~v~~v~~~--~g~--~i~~D~vi~a~G~~p  288 (469)
                      ++.||++++++.++++..++++++.+|.+.  +|+  ++.+|.||+|+|...
T Consensus       266 ~~~gv~i~~~~~v~~l~~~~~g~v~Gv~~~~~~g~~~~i~a~~VVlAtGg~~  317 (571)
T 1y0p_A          266 VKRNIDLRMNTRGIEVLKDDKGTVKGILVKGMYKGYYWVKADAVILATGGFA  317 (571)
T ss_dssp             HHTTCEEESSEEEEEEEECTTSCEEEEEEEETTTEEEEEECSEEEECCCCCT
T ss_pred             HhcCCEEEeCCEeeEeEEcCCCeEEEEEEEeCCCcEEEEECCeEEEeCCCcc
Confidence            457899999999999986544777667665  675  689999999999753

>3cp8_A TRNA uridine 5-carboxymethylaminomethyl modification enzyme GIDA; rossmann fold, FAD-binding domain, dinucleotide-binding motif; HET: FAD; 3.20A {Chlorobium tepidum}

Probab=97.36  E-value=0.00061  Score=70.41  Aligned_cols=82  Identities=21%  Similarity=0.379  Sum_probs=63.4

Q ss_pred             cCCeEEEEcCChHHHHHHHHHHhCCCeEe---------------------------------------------------
Q 012165          206 KAKKVVVVGGGYIGMEVAAAAVGWKLDTT---------------------------------------------------  234 (469)
Q Consensus       206 ~~~~vvVvG~G~~g~e~A~~l~~~g~~v~---------------------------------------------------  234 (469)
                      ..-.|+|||+|..|+++|..+++.|.+|.                                                   
T Consensus        20 ~~yDVIVIGgG~AGl~AAlaLAr~G~kVlLIEk~~~~iG~~~c~ps~gGia~~~lv~el~al~g~~~~~~d~~gi~f~~l   99 (641)
T 3cp8_A           20 HMYDVIVVGAGHAGCEAALAVARGGLHCLLITSDLSAVARMSCNPAIGGVAKGQITREIDALGGEMGKAIDATGIQFRML   99 (641)
T ss_dssp             CCEEEEEECCSHHHHHHHHHHHHTTCCEEEEESCGGGTTCCSSCSEEECHHHHHHHHHHHHHTCSHHHHHHHHEEEEEEE
T ss_pred             CcCCEEEECccHHHHHHHHHHHHCCCcEEEEEecccccCCCccccchhhhhHHHHHHHHHhcccHHHHHHHhcCCchhhc
Confidence            34589999999999999999999887765                                                   


Q ss_pred             ----------------------eeHHHHHH-cCcEEEcCCeEEEEEeCCCCcEEEEEcCCCCEEeCCEEEEccCCccC
Q 012165          235 ----------------------RYEQLYQQ-NGVKFVKGASIKNLEAGSDGRVAAVKLEDGSTIDADTIVIGIGAKPT  289 (469)
Q Consensus       235 ----------------------~~~~~l~~-~gV~~~~~~~v~~i~~~~~~~v~~v~~~~g~~i~~D~vi~a~G~~p~  289 (469)
                                            .+.+.+++ .|++++.+ .+..+..+ ++.+.+|.+.+|+++.+|.||+|+|..++
T Consensus       100 ~~~kgpav~~~r~~~Dr~~l~~~L~~~l~~~~GV~I~~~-~V~~L~~d-~g~V~GV~t~~G~~i~Ad~VVLATG~~s~  175 (641)
T 3cp8_A          100 NRSKGPAMHSPRAQADKTQYSLYMRRIVEHEPNIDLLQD-TVIGVSAN-SGKFSSVTVRSGRAIQAKAAILACGTFLN  175 (641)
T ss_dssp             CSSSCTTTCEEEEEECHHHHHHHHHHHHHTCTTEEEEEC-CEEEEEEE-TTEEEEEEETTSCEEEEEEEEECCTTCBT
T ss_pred             ccccCccccchhhhcCHHHHHHHHHHHHHhCCCCEEEee-EEEEEEec-CCEEEEEEECCCcEEEeCEEEECcCCCCC
Confidence                                  00123334 48888644 78887643 56677788899999999999999998755

>2ivd_A PPO, PPOX, protoporphyrinogen oxidase; porphyrin biosynthesis, chlorophyll biosynthesis, oxidoreductase, HAEM biosynthesis, heme biosynthesis; HET: ACJ FAD TWN; 2.3A {Myxococcus xanthus} SCOP: c.3.1.2 d.16.1.5 PDB: 2ive_A*

Probab=97.35  E-value=0.00013  Score=73.55  Aligned_cols=39  Identities=18%  Similarity=0.256  Sum_probs=33.4

Q ss_pred             CCCCcEEEEcCcHHHHHHHHHHHHcCCCCCcEEEEcCCCCCC
Q 012165           49 NENREFVIVGGGNAAGYAARTFVEHGMADGRLCIVSKEAYAP   90 (469)
Q Consensus        49 ~~~~~vvIIGgG~AGl~aA~~L~~~g~~~~~V~vie~~~~~~   90 (469)
                      ..++||+|||||++||+||..|++.|+   +|+|+|+.+..+
T Consensus        14 ~~~~~v~iiG~G~~Gl~aa~~l~~~g~---~v~v~E~~~~~G   52 (478)
T 2ivd_A           14 TTGMNVAVVGGGISGLAVAHHLRSRGT---DAVLLESSARLG   52 (478)
T ss_dssp             ---CCEEEECCBHHHHHHHHHHHTTTC---CEEEECSSSSSB
T ss_pred             CCCCcEEEECCCHHHHHHHHHHHHCCC---CEEEEEcCCCCC
Confidence            445799999999999999999999987   799999988754

>2gag_A Heterotetrameric sarcosine oxidase alpha-subunit; flavoenzyme, electron transfer, folate-ME enzyme, oxidoreductase; HET: NAD FAD FMN; 1.85A {Stenotrophomonas maltophilia} PDB: 2gah_A* 1x31_A* 1vrq_A* 3ad7_A* 3ad8_A* 3ad9_A* 3ada_A*

Probab=97.32  E-value=0.0002  Score=78.61  Aligned_cols=88  Identities=13%  Similarity=0.210  Sum_probs=69.2

Q ss_pred             CCcEEEEcCcHHHHHHHHHHHHcCCCCCcEEEEcCCCCCCCCCCCCcccccCCCCCCCCCCCCCccccCCCCCCCCHhHH
Q 012165           51 NREFVIVGGGNAAGYAARTFVEHGMADGRLCIVSKEAYAPYERPALTKGYLFPLDKKPARLPGFHTCVGSGGERQTPEWY  130 (469)
Q Consensus        51 ~~~vvIIGgG~AGl~aA~~L~~~g~~~~~V~vie~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  130 (469)
                      .++++|||+|+.|+.+|..|++.|.   +|+|++..+...       .                          . .+.+
T Consensus       284 gk~vvViGgG~~g~E~A~~L~~~G~---~Vtvv~~~~~~~-------~--------------------------~-~~~l  326 (965)
T 2gag_A          284 GARIAVATTNDSAYELVRELAATGG---VVAVIDARSSIS-------A--------------------------A-AAQA  326 (965)
T ss_dssp             CSSEEEEESSTTHHHHHHHHGGGTC---CSEEEESCSSCC-------H--------------------------H-HHHH
T ss_pred             CCeEEEEcCCHHHHHHHHHHHHcCC---cEEEEECCCccc-------h--------------------------h-HHHH
Confidence            3689999999999999999999986   599998765420       0                          0 2457


Q ss_pred             HHCCcEEEeCCcEEEEeC--CCc--EEEeCC-------C--eEEEeccEEeccCCCCC
Q 012165          131 KEKGIEMIYQDPVTSIDI--EKQ--TLITNS-------G--KLLKYGSLIVATGCTAS  175 (469)
Q Consensus       131 ~~~~i~~~~~~~v~~id~--~~~--~v~~~~-------g--~~~~yd~lVlAtG~~~~  175 (469)
                      ++.||+++.++.+.++..  +++  .|++.+       |  +++++|.|++|+|.+|.
T Consensus       327 ~~~GV~v~~~~~v~~i~~~~~~~v~~v~~~~~~~~~~~G~~~~i~~D~Vv~a~G~~P~  384 (965)
T 2gag_A          327 VADGVQVISGSVVVDTEADENGELSAIVVAELDEARELGGTQRFEADVLAVAGGFNPV  384 (965)
T ss_dssp             HHTTCCEEETEEEEEEEECTTSCEEEEEEEEECTTCCEEEEEEEECSEEEEECCEEEC
T ss_pred             HhCCeEEEeCCEeEEEeccCCCCEEEEEEEeccccCCCCceEEEEcCEEEECCCcCcC
Confidence            889999999999999976  333  455543       4  57999999999998775

>4dsg_A UDP-galactopyranose mutase; rossmann fold, flavin adenine dinucleotide, isomerase; HET: FAD UDP; 2.25A {Trypanosoma cruzi} PDB: 4dsh_A*

Probab=97.31  E-value=0.0002  Score=72.51  Aligned_cols=40  Identities=20%  Similarity=0.155  Sum_probs=34.6

Q ss_pred             CCCCcEEEEcCcHHHHHHHHHHHHcCCCCCcEEEEcCCCCCC
Q 012165           49 NENREFVIVGGGNAAGYAARTFVEHGMADGRLCIVSKEAYAP   90 (469)
Q Consensus        49 ~~~~~vvIIGgG~AGl~aA~~L~~~g~~~~~V~vie~~~~~~   90 (469)
                      ++++||+|||||++|+++|..|++.|.  .+|+|+|+.+..+
T Consensus         7 ~~~~~v~iiG~G~~Gl~~A~~l~~~g~--~~v~v~E~~~~~G   46 (484)
T 4dsg_A            7 LLTPKIVIIGAGPTGLGAAVRLTELGY--KNWHLYECNDTPG   46 (484)
T ss_dssp             CCSCCEEEECCSHHHHHHHHHHHHTTC--CSEEEEESSSSSS
T ss_pred             ccCCCEEEECcCHHHHHHHHHHHHcCC--CCEEEEeCCCCCC
Confidence            456899999999999999999999972  2799999987654

>3c4a_A Probable tryptophan hydroxylase VIOD; alpha-beta protein, structural genomics, PSI-2, protein structure initiative; HET: FAD; 2.30A {Chromobacterium violaceum atcc 12472}

Probab=97.31  E-value=0.00017  Score=70.54  Aligned_cols=35  Identities=20%  Similarity=0.210  Sum_probs=31.6

Q ss_pred             CcEEEEcCcHHHHHHHHHHHHc--CCCCCcEEEEcCCCCC
Q 012165           52 REFVIVGGGNAAGYAARTFVEH--GMADGRLCIVSKEAYA   89 (469)
Q Consensus        52 ~~vvIIGgG~AGl~aA~~L~~~--g~~~~~V~vie~~~~~   89 (469)
                      .||+|||||++|+++|..|++.  |.   +|+|+|+.+..
T Consensus         1 ~dV~IVGaG~aGl~~A~~L~~~~~G~---~V~v~E~~~~~   37 (381)
T 3c4a_A            1 MKILVIGAGPAGLVFASQLKQARPLW---AIDIVEKNDEQ   37 (381)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHHCTTS---EEEEECSSCTT
T ss_pred             CeEEEECCCHHHHHHHHHHHhcCCCC---CEEEEECCCCC
Confidence            3799999999999999999999  76   89999998654

>1d4d_A Flavocytochrome C fumarate reductase; oxidoreductase; HET: HEM FAD; 2.50A {Shewanella oneidensis} SCOP: a.138.1.3 c.3.1.4 d.168.1.1 PDB: 1d4e_A* 1d4c_A*

Probab=97.30  E-value=0.0011  Score=68.33  Aligned_cols=50  Identities=20%  Similarity=0.322  Sum_probs=38.3

Q ss_pred             HHHcCcEEEcCCeEEEEEeCCCCcEEEEEcC--CCC--EEeCCEEEEccCCccC
Q 012165          240 YQQNGVKFVKGASIKNLEAGSDGRVAAVKLE--DGS--TIDADTIVIGIGAKPT  289 (469)
Q Consensus       240 l~~~gV~~~~~~~v~~i~~~~~~~v~~v~~~--~g~--~i~~D~vi~a~G~~p~  289 (469)
                      +++.||++++++.++++..++++++.+|.+.  +|+  .+.+|.||+|+|..++
T Consensus       265 ~~~~gv~i~~~t~v~~l~~~~~g~v~GV~~~~~~G~~~~i~A~~VVlAtGg~~~  318 (572)
T 1d4d_A          265 AVKRGTDIRLNSRVVRILEDASGKVTGVLVKGEYTGYYVIKADAVVIAAGGFAK  318 (572)
T ss_dssp             HHHTTCEEESSEEEEEEEEC--CCEEEEEEEETTTEEEEEECSEEEECCCCCTT
T ss_pred             HHHcCCeEEecCEEEEEEECCCCeEEEEEEEeCCCcEEEEEcCEEEEeCCCCcc
Confidence            4567999999999999975433777777665  664  6899999999997653

>1sez_A Protoporphyrinogen oxidase, mitochondrial; FAD-binding, para-hydroxy-benzoate-hydroxylase fold (PHBH- fold), monotopic membrane-binding domain; HET: FAD OMN TON; 2.90A {Nicotiana tabacum} SCOP: c.3.1.2 d.16.1.5

Probab=97.28  E-value=0.00019  Score=73.00  Aligned_cols=38  Identities=21%  Similarity=0.347  Sum_probs=34.1

Q ss_pred             CCCcEEEEcCcHHHHHHHHHHHHcCCCCCcEEEEcCCCCCC
Q 012165           50 ENREFVIVGGGNAAGYAARTFVEHGMADGRLCIVSKEAYAP   90 (469)
Q Consensus        50 ~~~~vvIIGgG~AGl~aA~~L~~~g~~~~~V~vie~~~~~~   90 (469)
                      +++||+|||||++||+||..|++.|+   +|+|+|+.+..+
T Consensus        12 ~~~~v~iiG~G~~Gl~aA~~l~~~g~---~v~v~E~~~~~G   49 (504)
T 1sez_A           12 SAKRVAVIGAGVSGLAAAYKLKIHGL---NVTVFEAEGKAG   49 (504)
T ss_dssp             -CCEEEEECCSHHHHHHHHHHHTTSC---EEEEECSSSSSC
T ss_pred             CCCeEEEECCCHHHHHHHHHHHHCCC---cEEEEEeCCCCC
Confidence            45899999999999999999999987   899999998764

>1o94_A Tmadh, trimethylamine dehydrogenase; electron transport, protein complex; HET: FMN ADP AMP; 2.0A {Methylophilus methylotrophus} SCOP: c.1.4.1 c.3.1.1 c.4.1.1 PDB: 1djn_A* 1o95_A* 2tmd_A* 1djq_A*

Probab=97.27  E-value=0.00023  Score=75.73  Aligned_cols=98  Identities=19%  Similarity=0.225  Sum_probs=69.6

Q ss_pred             CCCcEEEEc--CcHHHHHHHHHHHHcCCCCCcEEEEcCCCCCCCCCCCCcccccCCCCCCCCCCCCCccccCCCCCCCCH
Q 012165           50 ENREFVIVG--GGNAAGYAARTFVEHGMADGRLCIVSKEAYAPYERPALTKGYLFPLDKKPARLPGFHTCVGSGGERQTP  127 (469)
Q Consensus        50 ~~~~vvIIG--gG~AGl~aA~~L~~~g~~~~~V~vie~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  127 (469)
                      ..++|+|||  ||..|+.+|..|++.|.   +|++++..+ ..      .. ...+..                 .....
T Consensus       527 ~gk~VvVIG~GgG~~g~e~A~~l~~~G~---~Vtlv~~~~-l~------~~-~~~~~~-----------------~~~~~  578 (729)
T 1o94_A          527 IGKRVVILNADTYFMAPSLAEKLATAGH---EVTIVSGVH-LA------NY-MHFTLE-----------------YPNMM  578 (729)
T ss_dssp             CCSEEEEEECCCSSHHHHHHHHHHHTTC---EEEEEESSC-TT------HH-HHHTTC-----------------HHHHH
T ss_pred             CCCeEEEEcCCCCchHHHHHHHHHHcCC---EEEEEeccc-cc------cc-cccccc-----------------HHHHH
Confidence            357999999  99999999999999986   899998765 21      00 000000                 01234


Q ss_pred             hHHHHCCcEEEeCCcEEEEeCCCcEEEe--CCC-eE------------------EEeccEEeccCCCCC
Q 012165          128 EWYKEKGIEMIYQDPVTSIDIEKQTLIT--NSG-KL------------------LKYGSLIVATGCTAS  175 (469)
Q Consensus       128 ~~~~~~~i~~~~~~~v~~id~~~~~v~~--~~g-~~------------------~~yd~lVlAtG~~~~  175 (469)
                      +.+++.||+++.++++.+++.+...+..  .++ +.                  +++|.||+|+|..|.
T Consensus       579 ~~l~~~GV~i~~~~~v~~i~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~aD~Vv~a~G~~p~  647 (729)
T 1o94_A          579 RRLHELHVEELGDHFCSRIEPGRMEIYNIWGDGSKRTYRGPGVSPRDANTSHRWIEFDSLVLVTGRHSE  647 (729)
T ss_dssp             HHHHHTTCEEECSEEEEEEETTEEEEEETTCSCSCCCCCCTTSCSSCCCCCCEEEECSEEEEESCEEEC
T ss_pred             HHHHhCCCEEEcCcEEEEEECCeEEEEEecCCceEEecccccccccccCCcceeeeCCEEEECCCCCCC
Confidence            5678899999999999999865434432  222 32                  899999999998764

>2qa2_A CABE, polyketide oxygenase CABE; FAD, angucycline, aromatic hydroxylase, oxidored; HET: FAD; 2.70A {Streptomyces}

Probab=97.26  E-value=0.00095  Score=67.69  Aligned_cols=81  Identities=22%  Similarity=0.336  Sum_probs=65.8

Q ss_pred             cCCeEEEEcCChHHHHHHHHHHhCCCeEe---------------------------------------------------
Q 012165          206 KAKKVVVVGGGYIGMEVAAAAVGWKLDTT---------------------------------------------------  234 (469)
Q Consensus       206 ~~~~vvVvG~G~~g~e~A~~l~~~g~~v~---------------------------------------------------  234 (469)
                      ...+|+|||+|+.|+-+|..|++.|.++.                                                   
T Consensus        11 ~~~dVlIVGaGpaGl~~A~~La~~G~~v~vlE~~~~~~~~~r~~~l~~~~~~~l~~lGl~~~~~~~~~~~~~~~~~~~~~   90 (499)
T 2qa2_A           11 SDASVIVVGAGPAGLMLAGELRLGGVDVMVLEQLPQRTGESRGLGFTARTMEVFDQRGILPAFGPVETSTQGHFGGRPVD   90 (499)
T ss_dssp             CCEEEEEECCSHHHHHHHHHHHHTTCCEEEEESCSSCCCCCCSEEECHHHHHHHHHTTCGGGGCSCCEESEEEETTEEEE
T ss_pred             CCCCEEEECcCHHHHHHHHHHHHCCCCEEEEECCCCCCCCCceeEECHHHHHHHHHCCCHHHHHhccccccceecceecc
Confidence            45689999999999999999999998876                                                   


Q ss_pred             ---------------------eeHHHHHHcCcEEEcCCeEEEEEeCCCCcEEEEEcCCCC---EEeCCEEEEccCCcc
Q 012165          235 ---------------------RYEQLYQQNGVKFVKGASIKNLEAGSDGRVAAVKLEDGS---TIDADTIVIGIGAKP  288 (469)
Q Consensus       235 ---------------------~~~~~l~~~gV~~~~~~~v~~i~~~~~~~v~~v~~~~g~---~i~~D~vi~a~G~~p  288 (469)
                                           .+.+.+++.|+++++++++++++.++++ + .+++.+++   ++.+|+||.|.|...
T Consensus        91 ~~~~~~~~~~~~~i~~~~l~~~L~~~~~~~gv~v~~~~~v~~i~~~~~~-v-~v~~~~~~g~~~~~a~~vVgADG~~S  166 (499)
T 2qa2_A           91 FGVLEGAHYGVKAVPQSTTESVLEEWALGRGAELLRGHTVRALTDEGDH-V-VVEVEGPDGPRSLTTRYVVGCDGGRS  166 (499)
T ss_dssp             GGGSTTCCCEEEEEEHHHHHHHHHHHHHHTTCEEEESCEEEEEEECSSC-E-EEEEECSSCEEEEEEEEEEECCCTTC
T ss_pred             cccCCCCCCceEecCHHHHHHHHHHHHHhCCCEEEcCCEEEEEEEeCCE-E-EEEEEcCCCcEEEEeCEEEEccCccc
Confidence                                 2234455679999999999999876444 4 36777765   799999999999875

>2z3y_A Lysine-specific histone demethylase 1; chromatin, nucleosome, transcription, LSD1, alternative splicing, chromatin regulator, coiled coil; HET: F2N; 2.25A {Homo sapiens} SCOP: a.4.1.18 c.3.1.2 d.16.1.5 PDB: 2ejr_A* 2z5u_A* 3abt_A* 3abu_A* 2y48_A* 2v1d_A* 2h94_A* 2iw5_A* 2uxn_A* 2uxx_A* 2hko_A* 2dw4_A* 2x0l_A* 2l3d_A

Probab=97.25  E-value=0.0001  Score=77.55  Aligned_cols=40  Identities=20%  Similarity=0.361  Sum_probs=35.4

Q ss_pred             CCCCCcEEEEcCcHHHHHHHHHHHHcCCCCCcEEEEcCCCCCC
Q 012165           48 ANENREFVIVGGGNAAGYAARTFVEHGMADGRLCIVSKEAYAP   90 (469)
Q Consensus        48 ~~~~~~vvIIGgG~AGl~aA~~L~~~g~~~~~V~vie~~~~~~   90 (469)
                      ....++|+|||||++|+++|..|.+.|+   +|+|+|+.+..+
T Consensus       104 ~~~~~~v~viG~G~~gl~~a~~l~~~g~---~v~~~e~~~~~g  143 (662)
T 2z3y_A          104 TKKTGKVIIIGSGVSGLAAARQLQSFGM---DVTLLEARDRVG  143 (662)
T ss_dssp             SSCCCEEEEECCBHHHHHHHHHHHHTTC---EEEEECSSSSSB
T ss_pred             ccCCCeEEEECcCHHHHHHHHHHHHCCC---eEEEEecCCCCC
Confidence            3556899999999999999999999998   799999987654

>2iid_A L-amino-acid oxidase; flavoenzyme, FAD binding domain, reaction mechanism, sustrat binding, oxidoreductase; HET: NAG FUC PHE FAD; 1.80A {Calloselasma rhodostoma} SCOP: c.3.1.2 d.16.1.5 PDB: 1f8s_A* 1f8r_A* 1reo_A* 1tdk_A* 1tdn_A* 1tdo_A* 3kve_A* 4e0v_A*

Probab=97.24  E-value=0.00025  Score=71.94  Aligned_cols=40  Identities=23%  Similarity=0.310  Sum_probs=35.2

Q ss_pred             CCCCCcEEEEcCcHHHHHHHHHHHHcCCCCCcEEEEcCCCCCC
Q 012165           48 ANENREFVIVGGGNAAGYAARTFVEHGMADGRLCIVSKEAYAP   90 (469)
Q Consensus        48 ~~~~~~vvIIGgG~AGl~aA~~L~~~g~~~~~V~vie~~~~~~   90 (469)
                      ...++||+|||||++|+++|..|++.|.   +|+|+|+.+..+
T Consensus        30 ~~~~~~v~IiGaG~~Gl~aA~~l~~~g~---~v~vlE~~~~~g   69 (498)
T 2iid_A           30 TSNPKHVVIVGAGMAGLSAAYVLAGAGH---QVTVLEASERPG   69 (498)
T ss_dssp             CSSCCEEEEECCBHHHHHHHHHHHHHTC---EEEEECSSSSSB
T ss_pred             CCCCCCEEEECCCHHHHHHHHHHHhCCC---eEEEEECCCCCC
Confidence            3456899999999999999999999987   799999987654

>2gmh_A Electron transfer flavoprotein-ubiquinone oxidoreductase; HET: BHG FAD UQ5; 2.50A {Sus scrofa} SCOP: c.3.1.2 d.16.1.8 d.58.1.6 PDB: 2gmj_A*

Probab=97.23  E-value=0.0013  Score=68.06  Aligned_cols=50  Identities=20%  Similarity=0.314  Sum_probs=40.5

Q ss_pred             HHHcCcEEEcCCeEEEEEeCCCCcEEEEEcC------CC---------CEEeCCEEEEccCCccC
Q 012165          240 YQQNGVKFVKGASIKNLEAGSDGRVAAVKLE------DG---------STIDADTIVIGIGAKPT  289 (469)
Q Consensus       240 l~~~gV~~~~~~~v~~i~~~~~~~v~~v~~~------~g---------~~i~~D~vi~a~G~~p~  289 (469)
                      +++.||++++++.++++..++++.+.+|.+.      +|         .++.+|.||.|.|....
T Consensus       154 a~~~Gv~i~~g~~v~~l~~~~~g~V~gV~~~~~g~~~~G~~~~~~~~g~~i~Ad~VV~AdG~~S~  218 (584)
T 2gmh_A          154 AEALGVEVYPGYAAAEILFHEDGSVKGIATNDVGIQKDGAPKTTFERGLELHAKVTIFAEGCHGH  218 (584)
T ss_dssp             HHHTTCEEETTCCEEEEEECTTSSEEEEEECCEEECTTSCEEEEEECCCEEECSEEEECCCTTCH
T ss_pred             HHHcCCEEEcCCEEEEEEEcCCCCEEEEEeCCccccCCCCcccccCCceEEECCEEEEeeCCCch
Confidence            3456999999999999987666777677776      33         68999999999999864

>3g5s_A Methylenetetrahydrofolate--tRNA-(uracil-5-)- methyltransferase TRMFO; tRNA methyltransferase FAD folate, FAD, flavoprotein; HET: MSE FAD GSH; 1.05A {Thermus thermophilus} PDB: 3g5q_A* 3g5r_A*

Probab=97.23  E-value=0.00029  Score=67.92  Aligned_cols=35  Identities=23%  Similarity=0.283  Sum_probs=32.1

Q ss_pred             CCcEEEEcCcHHHHHHHHHHHHcCCCCCcEEEEcCCCC
Q 012165           51 NREFVIVGGGNAAGYAARTFVEHGMADGRLCIVSKEAY   88 (469)
Q Consensus        51 ~~~vvIIGgG~AGl~aA~~L~~~g~~~~~V~vie~~~~   88 (469)
                      |+||+|||||+||+.||..|++.|.   +|+|+|+.+.
T Consensus         1 m~dViVIGgG~AG~~AA~~la~~G~---~V~liE~~~~   35 (443)
T 3g5s_A            1 MERVNVVGAGLAGSEAAWTLLRLGV---PVRLFEMRPK   35 (443)
T ss_dssp             CCCEEEECCSHHHHHHHHHHHHTTC---CEEEECCTTT
T ss_pred             CCCEEEECchHHHHHHHHHHHHCCC---cEEEEeccCC
Confidence            4799999999999999999999987   7999998764

>2bi7_A UDP-galactopyranose mutase; FAD, flavoprotein, isomerase, lipopolysaccharide biosynthesi; HET: FAD; 2.0A {Klebsiella pneumoniae} SCOP: c.4.1.3 d.16.1.7 PDB: 2bi8_A* 1wam_A* 3inr_A* 3gf4_A* 3int_A* 3kyb_A*

Probab=97.22  E-value=0.00024  Score=69.51  Aligned_cols=37  Identities=22%  Similarity=0.444  Sum_probs=33.3

Q ss_pred             CCcEEEEcCcHHHHHHHHHHHHcCCCCCcEEEEcCCCCCC
Q 012165           51 NREFVIVGGGNAAGYAARTFVEHGMADGRLCIVSKEAYAP   90 (469)
Q Consensus        51 ~~~vvIIGgG~AGl~aA~~L~~~g~~~~~V~vie~~~~~~   90 (469)
                      +.+|+|||||++|+++|..|++.|+   +|+|+|+++..+
T Consensus         3 ~~~v~iiG~G~~Gl~~A~~l~~~g~---~v~v~E~~~~~G   39 (384)
T 2bi7_A            3 SKKILIVGAGFSGAVIGRQLAEKGH---QVHIIDQRDHIG   39 (384)
T ss_dssp             CCEEEEECCSHHHHHHHHHHHTTTC---EEEEEESSSSSS
T ss_pred             cCCEEEECcCHHHHHHHHHHHHCCC---cEEEEEecCCcC
Confidence            4699999999999999999999886   899999987654

>2vvm_A Monoamine oxidase N; FAD, peroxisome, flavoprotein, oxidoreductase, enantioselectivity, directed evolution variant; HET: FAD; 1.85A {Aspergillus niger} PDB: 2vvl_A* 2vvl_G*

Probab=97.22  E-value=0.00022  Score=72.31  Aligned_cols=51  Identities=22%  Similarity=0.336  Sum_probs=41.1

Q ss_pred             eeHHHHHHcC-cEEEcCCeEEEEEeCCCCcEEEEEcCCCCEEeCCEEEEccCCc
Q 012165          235 RYEQLYQQNG-VKFVKGASIKNLEAGSDGRVAAVKLEDGSTIDADTIVIGIGAK  287 (469)
Q Consensus       235 ~~~~~l~~~g-V~~~~~~~v~~i~~~~~~~v~~v~~~~g~~i~~D~vi~a~G~~  287 (469)
                      .+.+.+++.| +++++++.|++|+..++ .+ .|.+.+|+++.+|.||+|+|..
T Consensus       260 ~l~~~l~~~g~~~i~~~~~V~~i~~~~~-~v-~v~~~~g~~~~ad~vI~a~~~~  311 (495)
T 2vvm_A          260 RFWEEAAGTGRLGYVFGCPVRSVVNERD-AA-RVTARDGREFVAKRVVCTIPLN  311 (495)
T ss_dssp             HHHHHHHTTTCEEEESSCCEEEEEECSS-SE-EEEETTCCEEEEEEEEECCCGG
T ss_pred             HHHHHhhhcCceEEEeCCEEEEEEEcCC-EE-EEEECCCCEEEcCEEEECCCHH
Confidence            4556677778 99999999999986543 34 5788888889999999999963

>2xdo_A TETX2 protein; tetracycline degradation, tigecycline, flavin, bacteroides F oxidoreductase; HET: FAD; 2.09A {Bacteroides thetaiotaomicron} PDB: 2y6q_A* 2xyo_A* 2y6r_A* 3p9u_A*

Probab=97.21  E-value=0.0013  Score=64.66  Aligned_cols=83  Identities=19%  Similarity=0.369  Sum_probs=62.8

Q ss_pred             cCCeEEEEcCChHHHHHHHHHHhCCCeEe-----------------ee-----HHHHHHc--------------------
Q 012165          206 KAKKVVVVGGGYIGMEVAAAAVGWKLDTT-----------------RY-----EQLYQQN--------------------  243 (469)
Q Consensus       206 ~~~~vvVvG~G~~g~e~A~~l~~~g~~v~-----------------~~-----~~~l~~~--------------------  243 (469)
                      ...+|+|||+|+.|+.+|..|++.|.+|+                 .+     .+.+++.                    
T Consensus        25 ~~~dV~IVGaG~aGl~~A~~L~~~G~~v~v~E~~~~~~~~~~g~~~~~~~~~~~~~l~~~gl~~~~~~~~~~~~~~~~~~  104 (398)
T 2xdo_A           25 SDKNVAIIGGGPVGLTMAKLLQQNGIDVSVYERDNDREARIFGGTLDLHKGSGQEAMKKAGLLQTYYDLALPMGVNIADE  104 (398)
T ss_dssp             TTCEEEEECCSHHHHHHHHHHHTTTCEEEEEECSSSTTCCCCSCCEECCTTTHHHHHHHTTCHHHHHHHCBCCCEEEECS
T ss_pred             CCCCEEEECCCHHHHHHHHHHHHCCCCEEEEeCCCCccccccCCeeeeCCccHHHHHHhcChHHHHHHhhcccceEEECC
Confidence            34689999999999999999999998887                 00     1222221                    


Q ss_pred             -----------------------------------CcEEEcCCeEEEEEeCCCCcEEEEEcCCCCEEeCCEEEEccCCcc
Q 012165          244 -----------------------------------GVKFVKGASIKNLEAGSDGRVAAVKLEDGSTIDADTIVIGIGAKP  288 (469)
Q Consensus       244 -----------------------------------gV~~~~~~~v~~i~~~~~~~v~~v~~~~g~~i~~D~vi~a~G~~p  288 (469)
                                                         ++++++++++++++.+++ .+ .|++.+|+++.+|+||.|.|...
T Consensus       105 ~g~~~~~~~~~~~~~~~~~~i~r~~l~~~L~~~~~~~~i~~~~~v~~i~~~~~-~v-~v~~~~g~~~~ad~vV~AdG~~S  182 (398)
T 2xdo_A          105 KGNILSTKNVKPENRFDNPEINRNDLRAILLNSLENDTVIWDRKLVMLEPGKK-KW-TLTFENKPSETADLVILANGGMS  182 (398)
T ss_dssp             SSEEEEECCCGGGTTSSCCEECHHHHHHHHHHTSCTTSEEESCCEEEEEECSS-SE-EEEETTSCCEEESEEEECSCTTC
T ss_pred             CCCchhhccccccCCCCCceECHHHHHHHHHhhcCCCEEEECCEEEEEEECCC-EE-EEEECCCcEEecCEEEECCCcch
Confidence                                               235777888999986543 34 57888998999999999999876


Q ss_pred             CC
Q 012165          289 TV  290 (469)
Q Consensus       289 ~~  290 (469)
                      ..
T Consensus       183 ~v  184 (398)
T 2xdo_A          183 KV  184 (398)
T ss_dssp             SC
T ss_pred             hH
Confidence            53

>1i8t_A UDP-galactopyranose mutase; rossman fold, FAD, contractase, isomerase; HET: FAD; 2.40A {Escherichia coli} SCOP: c.4.1.3 d.16.1.7

Probab=97.19  E-value=0.00023  Score=69.21  Aligned_cols=36  Identities=17%  Similarity=0.321  Sum_probs=32.6

Q ss_pred             CcEEEEcCcHHHHHHHHHHHHcCCCCCcEEEEcCCCCCC
Q 012165           52 REFVIVGGGNAAGYAARTFVEHGMADGRLCIVSKEAYAP   90 (469)
Q Consensus        52 ~~vvIIGgG~AGl~aA~~L~~~g~~~~~V~vie~~~~~~   90 (469)
                      +||+|||||++|+++|..|++.|.   +|+|+|+.+..+
T Consensus         2 ~~v~iiG~G~~Gl~~A~~l~~~g~---~v~v~E~~~~~G   37 (367)
T 1i8t_A            2 YDYIIVGSGLFGAVCANELKKLNK---KVLVIEKRNHIG   37 (367)
T ss_dssp             EEEEEECCSHHHHHHHHHHGGGTC---CEEEECSSSSSS
T ss_pred             CCEEEECcCHHHHHHHHHHHhCCC---cEEEEecCCCCC
Confidence            589999999999999999999987   799999987654

>3g3e_A D-amino-acid oxidase; FAD, flavoprotein, oxidoreductase, PER; HET: FAD G3E; 2.20A {Homo sapiens} PDB: 3cuk_A* 2e48_A* 2e49_A* 2e4a_A* 2e82_A* 2du8_A* 1ve9_A* 1dao_A* 1ddo_A* 1kif_A* 1an9_A* 1evi_A*

Probab=97.17  E-value=0.0002  Score=69.05  Aligned_cols=35  Identities=14%  Similarity=0.091  Sum_probs=30.4

Q ss_pred             cEEEEcCcHHHHHHHHHHHHcCC---CCCcEEEEcCCC
Q 012165           53 EFVIVGGGNAAGYAARTFVEHGM---ADGRLCIVSKEA   87 (469)
Q Consensus        53 ~vvIIGgG~AGl~aA~~L~~~g~---~~~~V~vie~~~   87 (469)
                      ||+|||||++|+++|.+|+++|.   +..+|+|+|+..
T Consensus         2 dVvIIGgGi~Gls~A~~La~~G~~~~p~~~V~vlE~~~   39 (351)
T 3g3e_A            2 RVVVIGAGVIGLSTALCIHERYHSVLQPLDIKVYADRF   39 (351)
T ss_dssp             EEEEECCSHHHHHHHHHHHHHHTTTSSSCEEEEEESSC
T ss_pred             cEEEECCCHHHHHHHHHHHHhccccCCCceEEEEECCC
Confidence            89999999999999999999971   124899999876

>2qa1_A PGAE, polyketide oxygenase PGAE; FAD, angucycline, aromatic hydroxylase, oxidored; HET: FAD; 1.80A {Streptomyces}

Probab=97.16  E-value=0.001  Score=67.43  Aligned_cols=82  Identities=23%  Similarity=0.281  Sum_probs=65.8

Q ss_pred             hcCCeEEEEcCChHHHHHHHHHHhCCCeEe--------------------------------------------------
Q 012165          205 EKAKKVVVVGGGYIGMEVAAAAVGWKLDTT--------------------------------------------------  234 (469)
Q Consensus       205 ~~~~~vvVvG~G~~g~e~A~~l~~~g~~v~--------------------------------------------------  234 (469)
                      ....+|+|||+|+.|+-+|..|++.|.++.                                                  
T Consensus         9 ~~~~dVlIVGaGpaGl~~A~~La~~G~~v~vlE~~~~~~~~~r~~~l~~~~~~~l~~lGl~~~~~~~~~~~~~~~~~~~~   88 (500)
T 2qa1_A            9 RSDAAVIVVGAGPAGMMLAGELRLAGVEVVVLERLVERTGESRGLGFTARTMEVFDQRGILPRFGEVETSTQGHFGGLPI   88 (500)
T ss_dssp             CSBCSEEEECCSHHHHHHHHHHHHTTCCEEEEESCCC-CCCCCSEEECHHHHHHHHTTTCGGGGCSCCBCCEEEETTEEE
T ss_pred             cCCCCEEEECcCHHHHHHHHHHHHCCCCEEEEeCCCCCCCCCCcceECHHHHHHHHHCCCHHHHHhccccccccccceec
Confidence            345689999999999999999999998876                                                  


Q ss_pred             ----------------------eeHHHHHHcCcEEEcCCeEEEEEeCCCCcEEEEEcCCCC---EEeCCEEEEccCCcc
Q 012165          235 ----------------------RYEQLYQQNGVKFVKGASIKNLEAGSDGRVAAVKLEDGS---TIDADTIVIGIGAKP  288 (469)
Q Consensus       235 ----------------------~~~~~l~~~gV~~~~~~~v~~i~~~~~~~v~~v~~~~g~---~i~~D~vi~a~G~~p  288 (469)
                                            .+.+.+++.|+++++++++++++.+++ .+ .+++.++.   ++.+|+||.|.|...
T Consensus        89 ~~~~~~~~~~~~~~i~~~~l~~~L~~~~~~~gv~v~~~~~v~~i~~~~~-~v-~v~~~~~~g~~~~~a~~vVgADG~~S  165 (500)
T 2qa1_A           89 DFGVLEGAWQAAKTVPQSVTETHLEQWATGLGADIRRGHEVLSLTDDGA-GV-TVEVRGPEGKHTLRAAYLVGCDGGRS  165 (500)
T ss_dssp             EGGGSTTGGGCEEEEEHHHHHHHHHHHHHHTTCEEEETCEEEEEEEETT-EE-EEEEEETTEEEEEEESEEEECCCTTC
T ss_pred             ccccCCCCCCceeecCHHHHHHHHHHHHHHCCCEEECCcEEEEEEEcCC-eE-EEEEEcCCCCEEEEeCEEEECCCcch
Confidence                                  223445567999999999999986544 34 46676664   799999999999875

>2gag_B Heterotetrameric sarcosine oxidase beta-subunit; flavoenzyme, electron transfer, folate-ME enzyme, oxidoreductase; HET: NAD FAD FMN; 1.85A {Stenotrophomonas maltophilia} PDB: 2gah_B* 1x31_B* 1vrq_B* 3ad7_B* 3ad8_B* 3ad9_B* 3ada_B*

Probab=97.15  E-value=0.0013  Score=64.38  Aligned_cols=48  Identities=19%  Similarity=0.354  Sum_probs=39.0

Q ss_pred             HHHcCcEEEcCCeEEEEEeCCCCcEEEEEcCCCCEEeCCEEEEccCCccC
Q 012165          240 YQQNGVKFVKGASIKNLEAGSDGRVAAVKLEDGSTIDADTIVIGIGAKPT  289 (469)
Q Consensus       240 l~~~gV~~~~~~~v~~i~~~~~~~v~~v~~~~g~~i~~D~vi~a~G~~p~  289 (469)
                      +++.|++++.+++|+++..+ ++.+..|.+.+| ++.+|.||+|+|....
T Consensus       184 ~~~~g~~i~~~~~v~~i~~~-~~~~~~v~~~~g-~~~a~~vV~a~G~~s~  231 (405)
T 2gag_B          184 ANEMGVDIIQNCEVTGFIKD-GEKVTGVKTTRG-TIHAGKVALAGAGHSS  231 (405)
T ss_dssp             HHHTTCEEECSCCEEEEEES-SSBEEEEEETTC-CEEEEEEEECCGGGHH
T ss_pred             HHHCCCEEEcCCeEEEEEEe-CCEEEEEEeCCc-eEECCEEEECCchhHH
Confidence            44568999999999999864 455667888888 7999999999998653

>1ryi_A Glycine oxidase; flavoprotein, protein-inhibitor complex, oxidoreductase; HET: FAD; 1.80A {Bacillus subtilis} SCOP: c.3.1.2 d.16.1.3 PDB: 3if9_A* 1ng4_A* 1ng3_A*

Probab=97.12  E-value=0.001  Score=64.73  Aligned_cols=54  Identities=17%  Similarity=0.297  Sum_probs=40.5

Q ss_pred             HHHcCcEEEcCCeEEEEEeCCCCcEEEEEcCCCCEEeCCEEEEccCCccCCchhhhcC
Q 012165          240 YQQNGVKFVKGASIKNLEAGSDGRVAAVKLEDGSTIDADTIVIGIGAKPTVSPFERVG  297 (469)
Q Consensus       240 l~~~gV~~~~~~~v~~i~~~~~~~v~~v~~~~g~~i~~D~vi~a~G~~p~~~~~~~~g  297 (469)
                      +++.|++++.++.|++++.. ++.+ .|.+.+| ++.+|.||+|+|.... .++...+
T Consensus       174 ~~~~g~~i~~~~~v~~i~~~-~~~~-~v~~~~g-~~~a~~vV~A~G~~s~-~l~~~~~  227 (382)
T 1ryi_A          174 AKMLGAEIFEHTPVLHVERD-GEAL-FIKTPSG-DVWANHVVVASGVWSG-MFFKQLG  227 (382)
T ss_dssp             HHHTTCEEETTCCCCEEECS-SSSE-EEEETTE-EEEEEEEEECCGGGTH-HHHHHTT
T ss_pred             HHHCCCEEEcCCcEEEEEEE-CCEE-EEEcCCc-eEEcCEEEECCChhHH-HHHHhcC
Confidence            34568999999999999854 4445 6777777 8999999999998653 3444444

>3ihg_A RDME; flavoenzyme, anthracycline, polyketide biosynthesis, merohedral twinning, enzyme mechanism, hydroxylase, flavoprotein; HET: FAD VAK; 2.49A {Streptomyces purpurascens}

Probab=97.10  E-value=0.0013  Score=67.38  Aligned_cols=50  Identities=16%  Similarity=0.207  Sum_probs=38.1

Q ss_pred             HHHHHcCcEEEcCCeEEEEEeCCCC---cEEEEEcCCC---CEEeCCEEEEccCCcc
Q 012165          238 QLYQQNGVKFVKGASIKNLEAGSDG---RVAAVKLEDG---STIDADTIVIGIGAKP  288 (469)
Q Consensus       238 ~~l~~~gV~~~~~~~v~~i~~~~~~---~v~~v~~~~g---~~i~~D~vi~a~G~~p  288 (469)
                      +.+++.|+++++++++++++.++++   .+ .+.+.++   .++.+|+||.|.|...
T Consensus       128 ~~a~~~gv~i~~~~~v~~i~~~~~~~~~~v-~v~~~~~~~~~~i~a~~vV~AdG~~S  183 (535)
T 3ihg_A          128 AQARKHGGAIRFGTRLLSFRQHDDDAGAGV-TARLAGPDGEYDLRAGYLVGADGNRS  183 (535)
T ss_dssp             HHHHHTTCEEESSCEEEEEEEECGGGCSEE-EEEEEETTEEEEEEEEEEEECCCTTC
T ss_pred             HHHHhCCCEEEeCCEEEEEEECCCCccccE-EEEEEcCCCeEEEEeCEEEECCCCcc
Confidence            3445679999999999999876442   33 4666665   6899999999999864

>2bs2_A Quinol-fumarate reductase flavoprotein subunit A; 2Fe-2S, 3Fe-4S, 4Fe-4S, citric acid cycle, dihaem cytochrome B; HET: FAD HEM LMT; 1.78A {Wolinella succinogenes} SCOP: a.7.3.1 c.3.1.4 d.168.1.1 PDB: 2bs3_A* 1e7p_A* 2bs4_A* 1qlb_A*

Probab=97.07  E-value=0.00029  Score=73.82  Aligned_cols=35  Identities=23%  Similarity=0.269  Sum_probs=32.0

Q ss_pred             CCcEEEEcCcHHHHHHHHHHHHcCCCCCcEEEEcCCCC
Q 012165           51 NREFVIVGGGNAAGYAARTFVEHGMADGRLCIVSKEAY   88 (469)
Q Consensus        51 ~~~vvIIGgG~AGl~aA~~L~~~g~~~~~V~vie~~~~   88 (469)
                      .+||||||||.||++||.+|++.|.   +|+|||+.+.
T Consensus         5 ~~DVvVIGgG~AGL~AAl~aae~G~---~V~vlEK~~~   39 (660)
T 2bs2_A            5 YCDSLVIGGGLAGLRAAVATQQKGL---STIVLSLIPV   39 (660)
T ss_dssp             ECSEEEECCSHHHHHHHHHHHTTTC---CEEEECSSCG
T ss_pred             cccEEEECchHHHHHHHHHHHHCCC---cEEEEeccCC
Confidence            5799999999999999999999987   7999999753

>1d5t_A Guanine nucleotide dissociation inhibitor; ultra-high resolution, hydrolase inhibitor; 1.04A {Bos taurus} SCOP: c.3.1.3 d.16.1.6 PDB: 1lv0_A* 1gnd_A

Probab=97.06  E-value=0.00055  Score=68.14  Aligned_cols=53  Identities=15%  Similarity=0.348  Sum_probs=42.5

Q ss_pred             eeHHHHHHcCcEEEcCCeEEEEEeCCCCcEEEEEcCCCCEEeCCEEEEccCCccC
Q 012165          235 RYEQLYQQNGVKFVKGASIKNLEAGSDGRVAAVKLEDGSTIDADTIVIGIGAKPT  289 (469)
Q Consensus       235 ~~~~~l~~~gV~~~~~~~v~~i~~~~~~~v~~v~~~~g~~i~~D~vi~a~G~~p~  289 (469)
                      .+.+.+++.|+++++++.|++|... ++++..|. .+|+++.+|.||+++|..+.
T Consensus       239 ~l~~~~~~~G~~i~~~~~V~~I~~~-~~~v~~v~-~~g~~~~ad~VV~a~~~~~~  291 (433)
T 1d5t_A          239 GFARLSAIYGGTYMLNKPVDDIIME-NGKVVGVK-SEGEVARCKQLICDPSYVPD  291 (433)
T ss_dssp             HHHHHHHHHTCCCBCSCCCCEEEEE-TTEEEEEE-ETTEEEECSEEEECGGGCGG
T ss_pred             HHHHHHHHcCCEEECCCEEEEEEEe-CCEEEEEE-ECCeEEECCEEEECCCCCcc
Confidence            4556677889999999999999864 56665565 47888999999999998764

>3p1w_A Rabgdi protein; GDI RAB, malaria, structural genomics consortium, SGC, trans PF10_0345, protein transport; 1.85A {Plasmodium falciparum 3D7}

Probab=96.97  E-value=0.00059  Score=68.30  Aligned_cols=53  Identities=17%  Similarity=0.322  Sum_probs=45.0

Q ss_pred             eeHHHHHHcCcEEEcCCeEEEEEeCCCCcEEEEEcCCCCEEeCCEEEEccCCc
Q 012165          235 RYEQLYQQNGVKFVKGASIKNLEAGSDGRVAAVKLEDGSTIDADTIVIGIGAK  287 (469)
Q Consensus       235 ~~~~~l~~~gV~~~~~~~v~~i~~~~~~~v~~v~~~~g~~i~~D~vi~a~G~~  287 (469)
                      .+.+.+++.|+++++++.|++|..++++++.+|++.+|+++.||.||.+++..
T Consensus       261 aL~r~~~~~Gg~i~l~t~V~~I~~d~~g~v~gV~~~~G~~i~Ad~VI~a~~~~  313 (475)
T 3p1w_A          261 GFSRMCAINGGTFMLNKNVVDFVFDDDNKVCGIKSSDGEIAYCDKVICDPSYV  313 (475)
T ss_dssp             HHHHHHHHC--CEESSCCEEEEEECTTSCEEEEEETTSCEEEEEEEEECGGGC
T ss_pred             HHHHHHHHcCCEEEeCCeEEEEEEecCCeEEEEEECCCcEEECCEEEECCCcc
Confidence            45677889999999999999998645778889999999999999999999988

>2gf3_A MSOX, monomeric sarcosine oxidase; flavoprotein oxidase, inhibitor 2-furoic acid, oxidoreductas; HET: FAD; 1.30A {Bacillus SP} SCOP: c.3.1.2 d.16.1.3 PDB: 1el7_A* 1el8_A* 1el9_A* 1eli_A* 1l9e_A* 2a89_A* 2gb0_A* 1el5_A* 3qse_A* 3qsm_A* 3qss_A* 3bhk_A* 3bhf_A* 3m12_A* 3m13_A* 3m0o_A* 1l9c_A* 1l9d_A* 1zov_A*

Probab=96.96  E-value=0.0023  Score=62.36  Aligned_cols=56  Identities=18%  Similarity=0.467  Sum_probs=40.5

Q ss_pred             HHHHHcCcEEEcCCeEEEEEeCCCCcEEEEEcCCCCEEeCCEEEEccCCccCCchhhhcC
Q 012165          238 QLYQQNGVKFVKGASIKNLEAGSDGRVAAVKLEDGSTIDADTIVIGIGAKPTVSPFERVG  297 (469)
Q Consensus       238 ~~l~~~gV~~~~~~~v~~i~~~~~~~v~~v~~~~g~~i~~D~vi~a~G~~p~~~~~~~~g  297 (469)
                      +.+++.|++++.++.|++++..+++ + .+.+.+| ++.+|.||+|+|...+ .++..++
T Consensus       158 ~~~~~~Gv~i~~~~~v~~i~~~~~~-~-~v~~~~g-~~~a~~vV~A~G~~~~-~l~~~~g  213 (389)
T 2gf3_A          158 ELAEARGAKVLTHTRVEDFDISPDS-V-KIETANG-SYTADKLIVSMGAWNS-KLLSKLN  213 (389)
T ss_dssp             HHHHHTTCEEECSCCEEEEEECSSC-E-EEEETTE-EEEEEEEEECCGGGHH-HHGGGGT
T ss_pred             HHHHHCCCEEEcCcEEEEEEecCCe-E-EEEeCCC-EEEeCEEEEecCccHH-HHhhhhc
Confidence            3445678999999999999865443 3 4666666 7999999999998754 3444443

>2aqj_A Tryptophan halogenase, pRNA; flavin-dependent halogenase, helical bundle, sandwiched sheets, structural genomics; HET: TRP FAD; 1.80A {Pseudomonas fluorescens} PDB: 2apg_A* 2ar8_A* 2ard_A* 2jkc_A*

Probab=96.95  E-value=0.0052  Score=62.88  Aligned_cols=47  Identities=19%  Similarity=0.361  Sum_probs=38.9

Q ss_pred             cCcEEEcCCeEEEEEeCCCCcEEEEEcCCCCEEeCCEEEEccCCccCC
Q 012165          243 NGVKFVKGASIKNLEAGSDGRVAAVKLEDGSTIDADTIVIGIGAKPTV  290 (469)
Q Consensus       243 ~gV~~~~~~~v~~i~~~~~~~v~~v~~~~g~~i~~D~vi~a~G~~p~~  290 (469)
                      .|++++.+ +|++++.++++.+..|.+.+|+++.+|.||.|+|.....
T Consensus       178 ~gv~~~~~-~v~~i~~~~~g~~~~v~~~~g~~i~ad~vV~A~G~~s~~  224 (538)
T 2aqj_A          178 RGVNRVVD-EVVDVRLNNRGYISNLLTKEGRTLEADLFIDCSGMRGLL  224 (538)
T ss_dssp             TTCEEEEC-CEEEEEECTTSCEEEEEETTSCEECCSEEEECCGGGCCC
T ss_pred             CCCEEEEe-eEeEEEEcCCCcEEEEEECCCcEEEeCEEEECCCCchhh
Confidence            57888888 799998755666667888899889999999999987653

>3c96_A Flavin-containing monooxygenase; FAD, oxidoreductase, PF01266, NESG, PAR240, structural genomics, PSI-2; HET: FAD; 1.90A {Pseudomonas aeruginosa PAO1} SCOP: c.3.1.2 d.16.1.2 PDB: 2rgj_A*

Probab=96.95  E-value=0.0015  Score=64.36  Aligned_cols=80  Identities=20%  Similarity=0.271  Sum_probs=60.8

Q ss_pred             CCeEEEEcCChHHHHHHHHHHhCCCe-Ee---------------------------------------------------
Q 012165          207 AKKVVVVGGGYIGMEVAAAAVGWKLD-TT---------------------------------------------------  234 (469)
Q Consensus       207 ~~~vvVvG~G~~g~e~A~~l~~~g~~-v~---------------------------------------------------  234 (469)
                      ..+|+|||+|+.|+.+|..|++.|.+ |+                                                   
T Consensus         4 ~~dVvIVGaG~aGl~~A~~L~~~G~~~v~v~E~~~~~~~~g~g~~l~~~~~~~l~~lg~~~~l~~~~~~~~~~~~~~~~g   83 (410)
T 3c96_A            4 PIDILIAGAGIGGLSCALALHQAGIGKVTLLESSSEIRPLGVGINIQPAAVEALAELGLGPALAATAIPTHELRYIDQSG   83 (410)
T ss_dssp             CCEEEEECCSHHHHHHHHHHHHTTCSEEEEEESSSSCCCCSCEEEECHHHHHHHHHTTCHHHHHHHSEEECEEEEECTTS
T ss_pred             CCeEEEECCCHHHHHHHHHHHhCCCCeEEEEECCCCcccceeEEEEChHHHHHHHHCCChHHHHhhCCCcceEEEEcCCC
Confidence            35899999999999999999999998 76                                                   


Q ss_pred             ----------------------------eeHHHHHH-cC-cEEEcCCeEEEEEeCCCCcEEEEEcCC---C--CEEeCCE
Q 012165          235 ----------------------------RYEQLYQQ-NG-VKFVKGASIKNLEAGSDGRVAAVKLED---G--STIDADT  279 (469)
Q Consensus       235 ----------------------------~~~~~l~~-~g-V~~~~~~~v~~i~~~~~~~v~~v~~~~---g--~~i~~D~  279 (469)
                                                  .+.+.+++ .| +++++++++++++. +++ + .+.+.+   |  +++.+|+
T Consensus        84 ~~~~~~~~~~~~~~~~~~~~i~r~~l~~~L~~~~~~~~g~~~v~~~~~v~~i~~-~~~-v-~v~~~~~~~g~~~~~~ad~  160 (410)
T 3c96_A           84 ATVWSEPRGVEAGNAYPQYSIHRGELQMILLAAVRERLGQQAVRTGLGVERIEE-RDG-R-VLIGARDGHGKPQALGADV  160 (410)
T ss_dssp             CEEEEEECGGGGTCSSCEEEEEHHHHHHHHHHHHHHHHCTTSEEESEEEEEEEE-ETT-E-EEEEEEETTSCEEEEEESE
T ss_pred             CEEeeccCCccccCCCCeeeeeHHHHHHHHHHHHHhhCCCcEEEECCEEEEEec-CCc-c-EEEEecCCCCCceEEecCE
Confidence                                        00122333 25 68999999999986 444 3 355554   7  5799999


Q ss_pred             EEEccCCccC
Q 012165          280 IVIGIGAKPT  289 (469)
Q Consensus       280 vi~a~G~~p~  289 (469)
                      ||.|.|....
T Consensus       161 vV~AdG~~S~  170 (410)
T 3c96_A          161 LVGADGIHSA  170 (410)
T ss_dssp             EEECCCTTCH
T ss_pred             EEECCCccch
Confidence            9999998764

>1pj5_A N,N-dimethylglycine oxidase; channelling, FAD binding, folate binding, amine oxidase, oxidoreductase; HET: FAD; 1.61A {Arthrobacter globiformis} SCOP: b.44.2.1 c.3.1.2 d.16.1.5 d.250.1.1 PDB: 1pj6_A* 1pj7_A* 3gsi_A*

Probab=96.94  E-value=0.0027  Score=68.68  Aligned_cols=49  Identities=29%  Similarity=0.447  Sum_probs=39.7

Q ss_pred             HHHHHcCcEEEcCCeEEEEEeCCCCcEEEEEcCCCCEEeCCEEEEccCCcc
Q 012165          238 QLYQQNGVKFVKGASIKNLEAGSDGRVAAVKLEDGSTIDADTIVIGIGAKP  288 (469)
Q Consensus       238 ~~l~~~gV~~~~~~~v~~i~~~~~~~v~~v~~~~g~~i~~D~vi~a~G~~p  288 (469)
                      +.+++.|++++.++.|++++.. ++.+..|.+.+| ++.+|.||+|+|...
T Consensus       159 ~~a~~~Gv~i~~~t~V~~i~~~-~~~v~~V~t~~G-~i~Ad~VV~AaG~~s  207 (830)
T 1pj5_A          159 KRTESAGVTYRGSTTVTGIEQS-GGRVTGVQTADG-VIPADIVVSCAGFWG  207 (830)
T ss_dssp             HHHHHTTCEEECSCCEEEEEEE-TTEEEEEEETTE-EEECSEEEECCGGGH
T ss_pred             HHHHHcCCEEECCceEEEEEEe-CCEEEEEEECCc-EEECCEEEECCccch
Confidence            4445679999999999999864 455666788777 799999999999865

>2rgh_A Alpha-glycerophosphate oxidase; flavoprotein oxidase, oxidoreductase; HET: FAD; 2.30A {Streptococcus SP} PDB: 2rgo_A*

Probab=96.92  E-value=0.00067  Score=70.02  Aligned_cols=51  Identities=14%  Similarity=0.135  Sum_probs=39.2

Q ss_pred             HHHHHHcCcEEEcCCeEEEEEeCCCCcEEEEEcC---CCC--EEeCCEEEEccCCcc
Q 012165          237 EQLYQQNGVKFVKGASIKNLEAGSDGRVAAVKLE---DGS--TIDADTIVIGIGAKP  288 (469)
Q Consensus       237 ~~~l~~~gV~~~~~~~v~~i~~~~~~~v~~v~~~---~g~--~i~~D~vi~a~G~~p  288 (469)
                      .+.+++.|++++.+++|+++..+ ++.+.+|.+.   +|+  ++.+|.||+|+|.-.
T Consensus       195 ~~~a~~~Ga~i~~~t~V~~l~~~-~~~v~gV~~~d~~tg~~~~i~A~~VV~AaG~ws  250 (571)
T 2rgh_A          195 IKKAAEDGAYLVSKMKAVGFLYE-GDQIVGVKARDLLTDEVIEIKAKLVINTSGPWV  250 (571)
T ss_dssp             HHHHHHTTCEEESSEEEEEEEEE-TTEEEEEEEEETTTCCEEEEEBSCEEECCGGGH
T ss_pred             HHHHHHcCCeEEeccEEEEEEEe-CCEEEEEEEEEcCCCCEEEEEcCEEEECCChhH
Confidence            34567889999999999999864 4566667653   343  699999999999754

>1gte_A Dihydropyrimidine dehydrogenase; electron transfer, flavin, iron-sulfur clusters, pyrimidine catabolism, 5-fluorouracil degradation, oxidoreductase; HET: FMN FAD; 1.65A {Sus scrofa} SCOP: a.1.2.2 c.1.4.1 c.3.1.1 c.4.1.1 d.58.1.5 PDB: 1gt8_A* 1gth_A* 1h7w_A* 1h7x_A*

Probab=96.92  E-value=0.0014  Score=72.51  Aligned_cols=93  Identities=18%  Similarity=0.222  Sum_probs=63.7

Q ss_pred             CCcEEEEcCcHHHHHHHHHHHHcCCCCCcEEEEcCCCCCCCCCCCCcccccCCCCCCCCCCCCCccccCCCCCCCCHhHH
Q 012165           51 NREFVIVGGGNAAGYAARTFVEHGMADGRLCIVSKEAYAPYERPALTKGYLFPLDKKPARLPGFHTCVGSGGERQTPEWY  130 (469)
Q Consensus        51 ~~~vvIIGgG~AGl~aA~~L~~~g~~~~~V~vie~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  130 (469)
                      ..+|+|||||..|+-+|..+++.|.  .+|+++++.+..          .+..          +         ....+.+
T Consensus       332 ~~~VvVIGgG~~g~e~A~~~~~~G~--~~Vtvv~r~~~~----------~~~~----------~---------~~e~~~~  380 (1025)
T 1gte_A          332 RGAVIVLGAGDTAFDCATSALRCGA--RRVFLVFRKGFV----------NIRA----------V---------PEEVELA  380 (1025)
T ss_dssp             CSEEEEECSSHHHHHHHHHHHHTTC--SEEEEECSSCGG----------GCCS----------C---------HHHHHHH
T ss_pred             CCcEEEECCChHHHHHHHHHHHcCC--CEEEEEEecChh----------hCCC----------C---------HHHHHHH
Confidence            4589999999999999999999874  279999876421          0000          0         0012456


Q ss_pred             HHCCcEEEeCCcEEEEeCCCcE---EEeC------CC---------eEEEeccEEeccCCCC
Q 012165          131 KEKGIEMIYQDPVTSIDIEKQT---LITN------SG---------KLLKYGSLIVATGCTA  174 (469)
Q Consensus       131 ~~~~i~~~~~~~v~~id~~~~~---v~~~------~g---------~~~~yd~lVlAtG~~~  174 (469)
                      ++.|++++.+..+.++..++..   |++.      +|         .++++|.||+|+|..|
T Consensus       381 ~~~Gv~~~~~~~~~~i~~~~g~v~~v~~~~~~~~~~g~~~~~~g~~~~i~aD~Vi~A~G~~~  442 (1025)
T 1gte_A          381 KEEKCEFLPFLSPRKVIVKGGRIVAVQFVRTEQDETGKWNEDEDQIVHLKADVVISAFGSVL  442 (1025)
T ss_dssp             HHTTCEEECSEEEEEEEEETTEEEEEEEEEEEECTTSCEEEEEEEEEEEECSEEEECSCEEC
T ss_pred             HHcCCEEEeCCCceEEEccCCeEEEEEEEEeEEcCCCCcccCCCceEEEECCEEEECCCCCC
Confidence            7789999888777777643322   2221      22         3689999999999864

>3gyx_A Adenylylsulfate reductase; oxidoreductase; HET: FAD; 3.20A {Desulfovibrio gigas}

Probab=96.88  E-value=0.00052  Score=71.86  Aligned_cols=36  Identities=25%  Similarity=0.364  Sum_probs=31.9

Q ss_pred             CCCcEEEEcCcHHHHHHHHHHHHc------CCCCCcEEEEcCCCC
Q 012165           50 ENREFVIVGGGNAAGYAARTFVEH------GMADGRLCIVSKEAY   88 (469)
Q Consensus        50 ~~~~vvIIGgG~AGl~aA~~L~~~------g~~~~~V~vie~~~~   88 (469)
                      ..+||||||||+||++||.+|++.      |.   +|+|||+...
T Consensus        21 ~~~DVvVVG~G~AGL~AAl~aa~~~~~~~pG~---~V~vleK~~~   62 (662)
T 3gyx_A           21 HSVDLLMVGGGMGNCGAAFEAVRWADKYAPEA---KILLVDKASL   62 (662)
T ss_dssp             EECSEEEECCSHHHHHHHHHHHHHHHHHCTTC---CEEEECSSCT
T ss_pred             EEcCEEEECCCHHHHHHHHHHHhhccccCCCC---cEEEEEecCC
Confidence            358999999999999999999997      76   7999999753

>3da1_A Glycerol-3-phosphate dehydrogenase; NESG BHR167 Q9KDW6 X-RAY, structural genomics, PSI-2, protein structure initiative; HET: FAD; 2.70A {Bacillus halodurans}

Probab=96.84  E-value=0.0021  Score=66.10  Aligned_cols=49  Identities=20%  Similarity=0.199  Sum_probs=38.4

Q ss_pred             HHHHcCcEEEcCCeEEEEEeCCCCcEEEEEcCC---C--CEEeCCEEEEccCCcc
Q 012165          239 LYQQNGVKFVKGASIKNLEAGSDGRVAAVKLED---G--STIDADTIVIGIGAKP  288 (469)
Q Consensus       239 ~l~~~gV~~~~~~~v~~i~~~~~~~v~~v~~~~---g--~~i~~D~vi~a~G~~p  288 (469)
                      .+++.|++++.+++|+++..+ ++.+.+|.+.+   |  .++.+|.||.|+|...
T Consensus       179 ~a~~~G~~i~~~~~V~~l~~~-~g~v~gV~~~d~~tg~~~~i~A~~VV~AaG~~s  232 (561)
T 3da1_A          179 EAVARGAVALNYMKVESFIYD-QGKVVGVVAKDRLTDTTHTIYAKKVVNAAGPWV  232 (561)
T ss_dssp             HHHHTTCEEEESEEEEEEEEE-TTEEEEEEEEETTTCCEEEEEEEEEEECCGGGH
T ss_pred             HHHHcCCEEEcCCEEEEEEEc-CCeEEEEEEEEcCCCceEEEECCEEEECCCcch
Confidence            355679999999999999864 56666677654   3  4799999999999754

>4at0_A 3-ketosteroid-delta4-5alpha-dehydrogenase; oxidoreductase, dehydogenase, steroid catabolism; HET: FAD; 1.60A {Rhodococcus jostii} PDB: 4at2_A*

Probab=96.83  E-value=0.0039  Score=63.32  Aligned_cols=49  Identities=18%  Similarity=0.301  Sum_probs=38.6

Q ss_pred             HHHcCcEEEcCCeEEEEEeCCCCcEEEEEcCCC-C--EEeCC-EEEEccCCcc
Q 012165          240 YQQNGVKFVKGASIKNLEAGSDGRVAAVKLEDG-S--TIDAD-TIVIGIGAKP  288 (469)
Q Consensus       240 l~~~gV~~~~~~~v~~i~~~~~~~v~~v~~~~g-~--~i~~D-~vi~a~G~~p  288 (469)
                      +++.||++++++.++++..++++++.+|...++ +  ++.+| .||+|+|--.
T Consensus       212 ~~~~Gv~i~~~t~v~~L~~~~~g~v~GV~~~~~g~~~~i~A~k~VVlAtGG~~  264 (510)
T 4at0_A          212 AEKLGVRAEYDMRVQTLVTDDTGRVVGIVAKQYGKEVAVRARRGVVLATGSFA  264 (510)
T ss_dssp             HHHTTCEEECSEEEEEEEECTTCCEEEEEEEETTEEEEEEEEEEEEECCCCCT
T ss_pred             HHHcCCEEEecCEeEEEEECCCCcEEEEEEEECCcEEEEEeCCeEEEeCCChh
Confidence            346799999999999998765688878776543 2  58996 9999998654

>2uzz_A N-methyl-L-tryptophan oxidase; N-methyltryptophan oxidase (MTOX), oxidative demethylation of N-methyl-L-tryptophan, FAD, flavoenzyme; HET: FAD; 3.2A {Escherichia coli}

Probab=96.83  E-value=0.0041  Score=60.16  Aligned_cols=46  Identities=17%  Similarity=0.344  Sum_probs=36.0

Q ss_pred             HHHcCcEEEcCCeEEEEEeCCCCcEEEEEcCCCCEEeCCEEEEccCCcc
Q 012165          240 YQQNGVKFVKGASIKNLEAGSDGRVAAVKLEDGSTIDADTIVIGIGAKP  288 (469)
Q Consensus       240 l~~~gV~~~~~~~v~~i~~~~~~~v~~v~~~~g~~i~~D~vi~a~G~~p  288 (469)
                      +++.|++++.+++|++++.++++ + .+.+.+| ++.+|.||+|+|...
T Consensus       159 ~~~~G~~i~~~~~V~~i~~~~~~-~-~v~~~~g-~~~a~~vV~a~G~~s  204 (372)
T 2uzz_A          159 AKEAGCAQLFNCPVTAIRHDDDG-V-TIETADG-EYQAKKAIVCAGTWV  204 (372)
T ss_dssp             HHHTTCEEECSCCEEEEEECSSS-E-EEEESSC-EEEEEEEEECCGGGG
T ss_pred             HHHCCCEEEcCCEEEEEEEcCCE-E-EEEECCC-eEEcCEEEEcCCccH
Confidence            34568999999999999865443 3 5777777 599999999999754

>3jsk_A Cypbp37 protein; octameric thiazole synthase, biosynthetic protein; HET: AHZ; 2.70A {Neurospora crassa}

Probab=96.83  E-value=0.0034  Score=59.86  Aligned_cols=120  Identities=23%  Similarity=0.270  Sum_probs=78.2

Q ss_pred             CCeEEEEcCChHHHHHHHHHHhC--CCeEe--------------------------------------------------
Q 012165          207 AKKVVVVGGGYIGMEVAAAAVGW--KLDTT--------------------------------------------------  234 (469)
Q Consensus       207 ~~~vvVvG~G~~g~e~A~~l~~~--g~~v~--------------------------------------------------  234 (469)
                      ...|+|||+|+.|+.+|..|++.  |.+|.                                                  
T Consensus        79 ~~DVvIVGgG~AGL~aA~~La~~~~G~~V~LiEk~~~~GGg~~~~g~~~~~~~~~~~~~~~L~~~Gv~~~~~G~~~~~~~  158 (344)
T 3jsk_A           79 ETDIVIVGAGSCGLSAAYVLSTLRPDLRITIVEAGVAPGGGAWLGGQLFSAMVMRKPADVFLDEVGVPYEDEGDYVVVKH  158 (344)
T ss_dssp             BCSEEEECCSHHHHHHHHHHHHHCTTSCEEEEESSSSCCTTTTCCBTTCCCEEEETTTHHHHHHHTCCCEECSSEEEESC
T ss_pred             cCCEEEECccHHHHHHHHHHHhcCCCCEEEEEeCCCccCCccccCCccchhhhcchHHHHHHHHcCCcccccCCeEEEec
Confidence            45899999999999999999987  77765                                                  


Q ss_pred             ------eeHHHHHH-cCcEEEcCCeEEEEEeCCC----------------C--cEEEEEcC--------------CCCEE
Q 012165          235 ------RYEQLYQQ-NGVKFVKGASIKNLEAGSD----------------G--RVAAVKLE--------------DGSTI  275 (469)
Q Consensus       235 ------~~~~~l~~-~gV~~~~~~~v~~i~~~~~----------------~--~v~~v~~~--------------~g~~i  275 (469)
                            .+.+.+.+ .|++++.++.+.++..+++                +  ++.+|...              +..++
T Consensus       159 ~~d~~~~L~~~a~~~~gV~i~~~~~V~dLi~~~d~~~~~~~~~~g~~~~~g~~rV~GVv~~~~~v~~~g~~~~~~d~~~i  238 (344)
T 3jsk_A          159 AALFTSTVLSKVLQRPNVKLFNATTVEDLITRKHHAESSSSSDDGEAEDEAKVRIAGVVTNWTLVSMHHDDQSAMDPNTI  238 (344)
T ss_dssp             HHHHHHHHHHHHHTCTTEEEEETEEEEEEEEEEC----------------CCEEEEEEEEEEHHHHTTSSSSSCCBCEEE
T ss_pred             HHHHHHHHHHHHHhCCCCEEEeCCEEEEEEecCCcccccccccccccccCCCceEeEEEeeeeeeeccCCcccccCceEE
Confidence                  11233444 5999999999998875432                3  66666542              22479


Q ss_pred             eCCEEEEccCCccCC-ch----hhhcCCccc-CCCEEeCCC-------CCC--CCCceEEeccccc
Q 012165          276 DADTIVIGIGAKPTV-SP----FERVGLNSS-VGGIQVDGQ-------FRT--RMPGIFAIGDVAA  326 (469)
Q Consensus       276 ~~D~vi~a~G~~p~~-~~----~~~~gl~~~-~g~i~Vd~~-------~~t--~~~~Vfa~GD~a~  326 (469)
                      .++.||.|+|..... .+    +...++... .|.-..+..       -.|  -+|++|++|=.+.
T Consensus       239 ~Ak~VV~ATG~~s~v~~~~~~~l~~~~~~~~~~g~~~~~~~~~e~~~v~~t~~v~~gl~~~gm~~~  304 (344)
T 3jsk_A          239 NAPVIISTTGHDGPFGAFSVKRLVSMKQMERLNGMRGLDMQSAEDAIVNNTREIVPGLIVGGMELS  304 (344)
T ss_dssp             ECSEEEECCCSSSSSSCHHHHHHHHTTSSSCCCCCEEECHHHHHHHHHHTCEEEETTEEECGGGHH
T ss_pred             EcCEEEECCCCCchhhHHHHHHHhhcCcccccCCCcccccccchhhhcccCceEcCCEEEechhhH
Confidence            999999999987642 12    334444311 111111100       012  3799999997664

>1jnr_A Adenylylsulfate reductase; oxidoreductase; HET: FAD; 1.60A {Archaeoglobus fulgidus dsm 4304} SCOP: a.7.3.1 c.3.1.4 d.168.1.1 PDB: 1jnz_A* 2fjb_A* 2fja_A* 2fjd_A* 2fje_A*

Probab=96.74  E-value=0.001  Score=69.63  Aligned_cols=36  Identities=28%  Similarity=0.450  Sum_probs=31.8

Q ss_pred             CCCcEEEEcCcHHHHHHHHHHH---H-cCCCCCcEEEEcCCCC
Q 012165           50 ENREFVIVGGGNAAGYAARTFV---E-HGMADGRLCIVSKEAY   88 (469)
Q Consensus        50 ~~~~vvIIGgG~AGl~aA~~L~---~-~g~~~~~V~vie~~~~   88 (469)
                      ..+||||||||+||++||..|+   + .|.   +|+|||+.+.
T Consensus        21 ~~~DVvVIG~G~AGl~AAl~aa~~~~~~G~---~V~vlEK~~~   60 (643)
T 1jnr_A           21 VETDILIIGGGFSGCGAAYEAAYWAKLGGL---KVTLVEKAAV   60 (643)
T ss_dssp             EECSEEEECCSHHHHHHHHHHHHHHTTTTC---CEEEECSSCT
T ss_pred             ccCCEEEECcCHHHHHHHHHHhhhhhhCCC---eEEEEeCcCC
Confidence            3579999999999999999999   5 776   7999999864

>1lqt_A FPRA; NADP+ derivative, oxidoreductase, structural G PSI, protein structure initiative, TB structural genomics consortium, TBSGC; HET: FAD ODP; 1.05A {Mycobacterium tuberculosis} SCOP: c.3.1.1 c.4.1.1 PDB: 1lqu_A* 2c7g_A*

Probab=96.65  E-value=0.0014  Score=65.51  Aligned_cols=44  Identities=9%  Similarity=0.203  Sum_probs=33.0

Q ss_pred             CCcEEEeCCcEEEEeCCCc--EEEeC----------------CC--eEEEeccEEeccCCCCCc
Q 012165          133 KGIEMIYQDPVTSIDIEKQ--TLITN----------------SG--KLLKYGSLIVATGCTASR  176 (469)
Q Consensus       133 ~~i~~~~~~~v~~id~~~~--~v~~~----------------~g--~~~~yd~lVlAtG~~~~~  176 (469)
                      .+++++++..+..+..+++  .|.+.                +|  +++++|.||+|+|.+|..
T Consensus       265 ~gv~i~~~~~~~~i~~~~~v~~v~~~~~~~~~~~~~~~~~~~~g~~~~i~~d~vi~a~G~~p~~  328 (456)
T 1lqt_A          265 RRMVFRFLTSPIEIKGKRKVERIVLGRNELVSDGSGRVAAKDTGEREELPAQLVVRSVGYRGVP  328 (456)
T ss_dssp             EEEEEECSEEEEEEECSSSCCEEEEEEEEEEECSSSSEEEEEEEEEEEEECSEEEECSCEECCC
T ss_pred             ceEEEEeCCCCeEEecCCcEeEEEEEEEEecCCCcccccccCCCceEEEEcCEEEEccccccCC
Confidence            6899999988998876543  24443                34  468999999999987754

>1b37_A Protein (polyamine oxidase); flavin-dependent amine oxidase, oxidoreductase; HET: NAG FCA MAN FAD; 1.90A {Zea mays} SCOP: c.3.1.2 d.16.1.5 PDB: 1b5q_A* 1h81_A* 1h82_A* 1h83_A* 1h84_A* 1h86_A* 3kpf_A* 3ku9_A* 3l1r_A*

Probab=96.59  E-value=0.0019  Score=64.99  Aligned_cols=41  Identities=20%  Similarity=0.315  Sum_probs=34.6

Q ss_pred             CcEEEcCCeEEEEEeCCCCcEEEEEcCCCCEEeCCEEEEccCC
Q 012165          244 GVKFVKGASIKNLEAGSDGRVAAVKLEDGSTIDADTIVIGIGA  286 (469)
Q Consensus       244 gV~~~~~~~v~~i~~~~~~~v~~v~~~~g~~i~~D~vi~a~G~  286 (469)
                      |.++++++.|++|+..++ .+ .|.+.+|+++.+|.||++++.
T Consensus       228 ~~~i~~~~~V~~i~~~~~-~v-~v~~~~g~~~~ad~vI~a~~~  268 (472)
T 1b37_A          228 DPRLQLNKVVREIKYSPG-GV-TVKTEDNSVYSADYVMVSASL  268 (472)
T ss_dssp             CTTEESSCCEEEEEECSS-CE-EEEETTSCEEEESEEEECSCH
T ss_pred             ccEEEcCCEEEEEEEcCC-cE-EEEECCCCEEEcCEEEEecCH
Confidence            678999999999987544 44 488899999999999999885

>1kdg_A CDH, cellobiose dehydrogenase; GMC oxidoreductase, PHBH fold, alpha/beta structure, rossman 6-hydroxylated FAD, oxidoreductase; HET: NAG MAN 6FA EMT; 1.50A {Phanerochaete chrysosporium} SCOP: c.3.1.2 d.16.1.1 PDB: 1naa_A*

Probab=96.58  E-value=0.0016  Score=66.82  Aligned_cols=58  Identities=17%  Similarity=0.307  Sum_probs=44.7

Q ss_pred             HHcCcEEEcCCeEEEEEeCCCCcEEEEEcCC---CC--EE---eCCEEEEccCCccCCchhhhcCCc
Q 012165          241 QQNGVKFVKGASIKNLEAGSDGRVAAVKLED---GS--TI---DADTIVIGIGAKPTVSPFERVGLN  299 (469)
Q Consensus       241 ~~~gV~~~~~~~v~~i~~~~~~~v~~v~~~~---g~--~i---~~D~vi~a~G~~p~~~~~~~~gl~  299 (469)
                      ++.|+++++++.|++|..+ ++++.+|++.+   |+  ++   .++.||+|+|......+|..+|+.
T Consensus       207 ~~~~~~i~~~~~V~~i~~~-~~~~~gV~~~~~~~g~~~~~~v~~~~~VIlaaG~~~sp~lL~~sGig  272 (546)
T 1kdg_A          207 ARPNFTFKTNVMVSNVVRN-GSQILGVQTNDPTLGPNGFIPVTPKGRVILSAGAFGTSRILFQSGIG  272 (546)
T ss_dssp             TCTTEEEECSCCEEEEEEE-TTEEEEEEESCTTSSGGGEEEEEEEEEEEECSHHHHHHHHHHHTTBS
T ss_pred             hCCCcEEEeCCEEEEEEEe-CCEEEEEEEEecCCCceeEEEEEeCCEEEEcCChhcCHHHHHHcCCC
Confidence            3469999999999999864 56788888865   63  34   889999999986655677666664

>2oln_A NIKD protein; flavoprotein, rossmann fold, oxidoreductase; HET: FAD; 1.15A {Streptomyces tendae} PDB: 2olo_A* 3hzl_A* 2q6u_A*

Probab=96.56  E-value=0.0061  Score=59.59  Aligned_cols=54  Identities=24%  Similarity=0.412  Sum_probs=38.3

Q ss_pred             HHHcCcEEEcCCeEEEEEeCCCCcEEEEEcCCCCEEeCCEEEEccCCccCCchhhhcC
Q 012165          240 YQQNGVKFVKGASIKNLEAGSDGRVAAVKLEDGSTIDADTIVIGIGAKPTVSPFERVG  297 (469)
Q Consensus       240 l~~~gV~~~~~~~v~~i~~~~~~~v~~v~~~~g~~i~~D~vi~a~G~~p~~~~~~~~g  297 (469)
                      +++.|++++.++.|++++.++ +.+ .|.+.+| ++.+|.||+|+|.... .+++.++
T Consensus       163 a~~~Gv~i~~~~~V~~i~~~~-~~v-~v~t~~g-~i~a~~VV~A~G~~s~-~l~~~~g  216 (397)
T 2oln_A          163 AQAAGATLRAGETVTELVPDA-DGV-SVTTDRG-TYRAGKVVLACGPYTN-DLLEPLG  216 (397)
T ss_dssp             HHHTTCEEEESCCEEEEEEET-TEE-EEEESSC-EEEEEEEEECCGGGHH-HHHGGGT
T ss_pred             HHHcCCEEECCCEEEEEEEcC-CeE-EEEECCC-EEEcCEEEEcCCcChH-HHhhhcC
Confidence            345689999999999998643 334 3666665 7999999999998643 3444443

>1y56_A Hypothetical protein PH1363; dehydrogenase, protein-protein complex, oxidoreductase; HET: FAD FMN ATP CXS; 2.86A {Pyrococcus horikoshii}

Probab=96.50  E-value=0.0017  Score=65.66  Aligned_cols=83  Identities=17%  Similarity=0.197  Sum_probs=59.7

Q ss_pred             CCeEEEEcCChHHHHHHHHHHhCCCeEe-----------------ee----------HHHHH---HcCcEEEcCCeEEEE
Q 012165          207 AKKVVVVGGGYIGMEVAAAAVGWKLDTT-----------------RY----------EQLYQ---QNGVKFVKGASIKNL  256 (469)
Q Consensus       207 ~~~vvVvG~G~~g~e~A~~l~~~g~~v~-----------------~~----------~~~l~---~~gV~~~~~~~v~~i  256 (469)
                      ..+|+|||+|+.|+.+|..|++. .+|+                 ..          ...+.   +.|++++.++.+.++
T Consensus       108 ~~dVvIIGgG~aGl~aA~~L~~~-~~V~vie~~~~~GG~~~~~~~~~~g~~~~~~~~~~~l~~~l~~~v~~~~~~~v~~i  186 (493)
T 1y56_A          108 VVDVAIIGGGPAGIGAALELQQY-LTVALIEERGWLGGDMWLKGIKQEGFNKDSRKVVEELVGKLNENTKIYLETSALGV  186 (493)
T ss_dssp             EESCCEECCSHHHHHHHHHHTTT-CCEEEECTTSSSSCSGGGTCSEETTTTEEHHHHHHHHHHTCCTTEEEETTEEECCC
T ss_pred             cCCEEEECccHHHHHHHHHHHhc-CCEEEEeCCCCCCCeeeccccccCCCCCCHHHHHHHHHHHHhcCCEEEcCCEEEEE
Confidence            35799999999999999999988 7776                 00          01222   358999999988888


Q ss_pred             EeCCCCcEEEEEcCCCC--EEeCCEEEEccCCccCCc
Q 012165          257 EAGSDGRVAAVKLEDGS--TIDADTIVIGIGAKPTVS  291 (469)
Q Consensus       257 ~~~~~~~v~~v~~~~g~--~i~~D~vi~a~G~~p~~~  291 (469)
                      ...+ ..+.....++++  .+.+|.+|+|+|..|...
T Consensus       187 ~~~~-~~~~~~~~~~~~~~~~~~d~lvlAtGa~~~~~  222 (493)
T 1y56_A          187 FDKG-EYFLVPVVRGDKLIEILAKRVVLATGAIDSTM  222 (493)
T ss_dssp             EECS-SSEEEEEEETTEEEEEEESCEEECCCEEECCC
T ss_pred             EcCC-cEEEEEEecCCeEEEEECCEEEECCCCCccCC
Confidence            7543 333222224554  689999999999988644

>2wdq_A Succinate dehydrogenase flavoprotein subunit; succinate dehydrogenase activity, cell inner membrane, trica acid cycle; HET: FAD HEM CBE; 2.40A {Escherichia coli} PDB: 1nen_A* 2acz_A* 1nek_A* 2wdr_A* 2wdv_A* 2wp9_A* 2ws3_A* 2wu2_A* 2wu5_A*

Probab=96.48  E-value=0.012  Score=60.75  Aligned_cols=50  Identities=22%  Similarity=0.249  Sum_probs=38.3

Q ss_pred             HHHHHcCcEEEcCCeEEEEEeCCCCcEEEEEc---CCCC--EEeCCEEEEccCCc
Q 012165          238 QLYQQNGVKFVKGASIKNLEAGSDGRVAAVKL---EDGS--TIDADTIVIGIGAK  287 (469)
Q Consensus       238 ~~l~~~gV~~~~~~~v~~i~~~~~~~v~~v~~---~~g~--~i~~D~vi~a~G~~  287 (469)
                      +.+++.||+++.++.+.++..++++++.+|..   .+|+  .+.++.||+|+|.-
T Consensus       151 ~~~~~~gv~i~~~~~v~~L~~~~~g~v~Gv~~~~~~~g~~~~i~A~~VVlAtGg~  205 (588)
T 2wdq_A          151 QQNLKNHTTIFSEWYALDLVKNQDGAVVGCTALCIETGEVVYFKARATVLATGGA  205 (588)
T ss_dssp             HHHHHTTCEEEETEEEEEEEECTTSCEEEEEEEETTTCCEEEEEEEEEEECCCCC
T ss_pred             HHHHhCCCEEEeCcEEEEEEECCCCEEEEEEEEEcCCCeEEEEEcCEEEECCCCC
Confidence            33456799999999999998644567767664   4665  58999999999963

>4gde_A UDP-galactopyranose mutase; flavin adenine dinucleotide binding, nucleotide binding, MUT isomerase; HET: FDA; 2.20A {Aspergillus fumigatus} PDB: 3ute_A* 3utg_A* 3uth_A* 4gdc_A* 4gdd_A* 3utf_A* 3ukh_A* 3ukf_A* 3uka_A* 3ukl_A* 3ukk_A* 3ukq_A* 3ukp_A*

Probab=96.47  E-value=0.0024  Score=64.70  Aligned_cols=27  Identities=22%  Similarity=0.175  Sum_probs=23.8

Q ss_pred             CeEEEEcCChHHHHHHHHHHh-CCCeEe
Q 012165          208 KKVVVVGGGYIGMEVAAAAVG-WKLDTT  234 (469)
Q Consensus       208 ~~vvVvG~G~~g~e~A~~l~~-~g~~v~  234 (469)
                      -.|+|||+|.+|+-+|..|++ .|.+|+
T Consensus        11 ~DVvIIGaGisGLsaA~~L~k~~G~~V~   38 (513)
T 4gde_A           11 VDVLVIGAGPTGLGAAKRLNQIDGPSWM   38 (513)
T ss_dssp             EEEEEECCSHHHHHHHHHHHHHCCSCEE
T ss_pred             CCEEEECCcHHHHHHHHHHHhhCCCCEE
Confidence            369999999999999999987 488886

>3ayj_A Pro-enzyme of L-phenylalanine oxidase; amino acid oxidase, flavoenzyme, L- binding, oxidoreductase; HET: FAD PHE; 1.10A {Pseudomonas} PDB: 2yr4_A* 2yr6_A* 3ayi_A* 2yr5_A* 3ayl_A*

Probab=96.35  E-value=0.0016  Score=68.22  Aligned_cols=39  Identities=21%  Similarity=0.158  Sum_probs=32.4

Q ss_pred             CCcEEEEcCcHHHHHHHHHHHHcCC-----CCCcEEEEcCCC-CC
Q 012165           51 NREFVIVGGGNAAGYAARTFVEHGM-----ADGRLCIVSKEA-YA   89 (469)
Q Consensus        51 ~~~vvIIGgG~AGl~aA~~L~~~g~-----~~~~V~vie~~~-~~   89 (469)
                      +++|+|||||+|||+||..|.+.|.     +..+|+|+|+.+ ..
T Consensus        56 ~~~v~IiGaGiaGL~aA~~L~~~g~~~~~~~~~~V~v~E~~~~r~  100 (721)
T 3ayj_A           56 NYRIAIVGGGAGGIAALYELGRLAATLPAGSGIDVQIYEADPDSF  100 (721)
T ss_dssp             EEEEEEECCSHHHHHHHHHHHHHHTTSCTTCEEEEEEECCCTTBG
T ss_pred             CCeEEEECCCHHHHHHHHHHHHcCcccccCCCceEEEEeccCccc
Confidence            4789999999999999999999871     013799999987 54

>2dkh_A 3-hydroxybenzoate hydroxylase; flavoprotein, monooxygenase, complex, oxidoreductase; HET: FAD 3HB; 1.80A {Comamonas testosteroni} PDB: 2dki_A*

Probab=96.31  E-value=0.0064  Score=63.60  Aligned_cols=51  Identities=18%  Similarity=0.191  Sum_probs=35.4

Q ss_pred             HHHHHcCc--EEEcCCeEEEEEeCCC--CcEEEEEcC------CC--CEEeCCEEEEccCCcc
Q 012165          238 QLYQQNGV--KFVKGASIKNLEAGSD--GRVAAVKLE------DG--STIDADTIVIGIGAKP  288 (469)
Q Consensus       238 ~~l~~~gV--~~~~~~~v~~i~~~~~--~~v~~v~~~------~g--~~i~~D~vi~a~G~~p  288 (469)
                      +.+++.|+  ++++++++++++.+++  +....+++.      +|  +++.+|+||.|.|...
T Consensus       149 ~~a~~~g~~v~v~~~~~v~~l~~~~~~~~~~v~v~~~~~~~~~~G~~~~i~a~~vVgADG~~S  211 (639)
T 2dkh_A          149 ERMRNSPSRLEPHYARRVLDVKVDHGAADYPVTVTLERCDAAHAGQIETVQARYVVGCDGARS  211 (639)
T ss_dssp             HHHHHSTTCCCCBCSEEEEEEEECTTCSSCCEEEEEEECSGGGTTCEEEEEEEEEEECCCTTC
T ss_pred             HHHHhCCCCcEEecCCEEEEEEECCCCCcCCEEEEEEeccccCCCCeEEEEeCEEEECCCcch
Confidence            34455665  8999999999986542  212245544      46  5799999999999764

>1cjc_A Protein (adrenodoxin reductase); flavoenzyme, MAD analysis, electron transferase, oxidoreductase; HET: FAD; 1.70A {Bos taurus} SCOP: c.3.1.1 c.4.1.1 PDB: 1e1k_A* 1e1l_A* 1e1m_A* 1e1n_A* 1e6e_A*

Probab=96.29  E-value=0.0012  Score=66.22  Aligned_cols=72  Identities=17%  Similarity=0.276  Sum_probs=54.6

Q ss_pred             cCCeEEEEcCChHHHHHHHHHHhCC--CeEe----------------------------eeHHHHHHcCcEEEcCCeEEE
Q 012165          206 KAKKVVVVGGGYIGMEVAAAAVGWK--LDTT----------------------------RYEQLYQQNGVKFVKGASIKN  255 (469)
Q Consensus       206 ~~~~vvVvG~G~~g~e~A~~l~~~g--~~v~----------------------------~~~~~l~~~gV~~~~~~~v~~  255 (469)
                      ..++++|||+|+.|+.+|..|.+.+  .+++                            .+.+.+++.||+++.++.+. 
T Consensus         5 ~~~~vvIIG~G~aGl~aA~~l~~~g~~~~V~vie~~~~~gg~~~~g~~p~~~~~~~~~~~~~~~~~~~gv~~~~~~~v~-   83 (460)
T 1cjc_A            5 QTPQICVVGSGPAGFYTAQHLLKHHSRAHVDIYEKQLVPFGLVRFGVAPDHPEVKNVINTFTQTARSDRCAFYGNVEVG-   83 (460)
T ss_dssp             -CCEEEEECCSHHHHHHHHHHHHHCSSCEEEEECSSSSSCTHHHHTSCTTCGGGGGHHHHHHHHHTSTTEEEEBSCCBT-
T ss_pred             CCceEEEECcCHHHHHHHHHHHhcCCCCCEEEEeCCCcCCceeecccCCCCccHHHHHHHHHHHHHhCCcEEEeeeEEe-
Confidence            4578999999999999999999988  7776                            23455667899999886552 


Q ss_pred             EEeCCCCcEEEEEcCCCCEEeCCEEEEccCCcc
Q 012165          256 LEAGSDGRVAAVKLEDGSTIDADTIVIGIGAKP  288 (469)
Q Consensus       256 i~~~~~~~v~~v~~~~g~~i~~D~vi~a~G~~p  288 (469)
                            .   .|.+++. .+.+|.||+|+|..|
T Consensus        84 ------~---~V~~~~~-~~~~d~lVlAtGs~~  106 (460)
T 1cjc_A           84 ------R---DVTVQEL-QDAYHAVVLSYGAED  106 (460)
T ss_dssp             ------T---TBCHHHH-HHHSSEEEECCCCCE
T ss_pred             ------e---EEEeccc-eEEcCEEEEecCcCC
Confidence                  1   1334333 478999999999885

>1ju2_A HydroxynitrIle lyase; flavin, GMC oxidoreductase, almond, cyanogenesis; HET: NAG NDG FUC BMA MAN FAD; 1.47A {Prunus dulcis} SCOP: c.3.1.2 d.16.1.1 PDB: 3gdp_A* 3gdn_A*

Probab=96.26  E-value=0.0016  Score=66.58  Aligned_cols=59  Identities=14%  Similarity=0.178  Sum_probs=42.6

Q ss_pred             HHHcCcEEEcCCeEEEEEeCCC--CcEEEEEcC--CCC--EE---eCCEEEEccCCccCCchhhhcCC
Q 012165          240 YQQNGVKFVKGASIKNLEAGSD--GRVAAVKLE--DGS--TI---DADTIVIGIGAKPTVSPFERVGL  298 (469)
Q Consensus       240 l~~~gV~~~~~~~v~~i~~~~~--~~v~~v~~~--~g~--~i---~~D~vi~a~G~~p~~~~~~~~gl  298 (469)
                      .++.|+++++++.|++|..+++  +++.+|++.  +|+  ++   .++.||+|+|.--+..+|..+|+
T Consensus       204 ~~~~~~~v~~~~~v~~i~~~~~~~~~~~GV~~~~~~g~~~~~~v~a~k~VILaaGa~~sp~lL~~SGi  271 (536)
T 1ju2_A          204 GNSNNLRVGVHASVEKIIFSNAPGLTATGVIYRDSNGTPHQAFVRSKGEVIVSAGTIGTPQLLLLSGV  271 (536)
T ss_dssp             SCTTTEEEEESCEEEEEEECCSSSCBEEEEEEECTTSCEEEEEEEEEEEEEECCHHHHHHHHHHHTTE
T ss_pred             hcCCCcEEEeCCEEEEEEECCCCCCEEEEEEEEeCCCceEEEEeccCCEEEEcCcccCCHHHHHHcCC
Confidence            4578999999999999986543  478788774  465  34   57899999997544455555554

>3t37_A Probable dehydrogenase; BET alpha beta fold, ADP binding, oxidoreductase; HET: FAD; 2.19A {Mesorhizobium loti}

Probab=96.22  E-value=0.0025  Score=65.02  Aligned_cols=60  Identities=18%  Similarity=0.355  Sum_probs=43.3

Q ss_pred             HHHHcCcEEEcCCeEEEEEeCCCCcEEEEEcCCC---CEEeCCEEEEccCCccCCchhhhcCCc
Q 012165          239 LYQQNGVKFVKGASIKNLEAGSDGRVAAVKLEDG---STIDADTIVIGIGAKPTVSPFERVGLN  299 (469)
Q Consensus       239 ~l~~~gV~~~~~~~v~~i~~~~~~~v~~v~~~~g---~~i~~D~vi~a~G~~p~~~~~~~~gl~  299 (469)
                      ...+.++.+..++.+.++..+ ++++.+|...+.   ..+.++.||+|.|..-...+|..+|+.
T Consensus       220 ~~~r~nl~v~~~~~v~~i~~~-~~~a~gv~~~~~~~~~~~~a~~VILsAGai~SP~LLl~SGig  282 (526)
T 3t37_A          220 VRGRKNLTILTGSRVRRLKLE-GNQVRSLEVVGRQGSAEVFADQIVLCAGALESPALLMRSGIG  282 (526)
T ss_dssp             HHTCTTEEEECSCEEEEEEEE-TTEEEEEEEEETTEEEEEEEEEEEECSHHHHHHHHHHHTTEE
T ss_pred             ccCCCCeEEEeCCEEEEEEec-CCeEEEEEEEecCceEEEeecceEEcccccCCcchhhhccCC
Confidence            344678999999999999854 566666665433   357889999999976555666666553

>3q9t_A Choline dehydrogenase and related flavoproteins; glucose-methanol-choline oxidoreductase family, formate OXID formyl-FAD, oxidoreductase; HET: FAY; 2.24A {Aspergillus oryzae}

Probab=96.19  E-value=0.0029  Score=65.08  Aligned_cols=58  Identities=17%  Similarity=0.225  Sum_probs=40.9

Q ss_pred             HHcCcEEEcCCeEEEEEeCC-CCcEEEEEcC--CCC--EEeC-CEEEEccCCccCCchhhhcCC
Q 012165          241 QQNGVKFVKGASIKNLEAGS-DGRVAAVKLE--DGS--TIDA-DTIVIGIGAKPTVSPFERVGL  298 (469)
Q Consensus       241 ~~~gV~~~~~~~v~~i~~~~-~~~v~~v~~~--~g~--~i~~-D~vi~a~G~~p~~~~~~~~gl  298 (469)
                      ++.|+++++++.+++|.-++ ++++++|++.  +|+  ++.+ ..||+|.|.-....+|..+|+
T Consensus       217 ~r~Nl~v~~~a~v~ri~~~~~~~~a~GV~~~~~~g~~~~v~A~keVILsaGa~~sp~lL~~SGI  280 (577)
T 3q9t_A          217 NKPNITIVPEVHSKRLIINEADRTCKGVTVVTAAGNELNFFADREVILSQGVFETPKLLMLSGI  280 (577)
T ss_dssp             SCTTEEEECSEEEEEEEEETTTTEEEEEEEEETTSCEEEEEEEEEEEECSHHHHHHHHHHHTTE
T ss_pred             cCCCeEEEcCcEEEEEEEeCCCCEEEEEEEEeCCCcEEEEEeeeEEEEcccccCChHHHHHcCC
Confidence            45799999999999997643 5678888775  364  4566 569999997644455554443

>1chu_A Protein (L-aspartate oxidase); flavoenzyme, NAD biosynthesis, FAD, oxidoreductase; 2.20A {Escherichia coli} SCOP: a.7.3.1 c.3.1.4 d.168.1.1 PDB: 1knr_A* 1knp_A*

Probab=96.10  E-value=0.019  Score=58.70  Aligned_cols=45  Identities=16%  Similarity=0.240  Sum_probs=35.1

Q ss_pred             cCcEEEcCCeEEEEEeCCCC------cEEEEEcC---CCC--EEeCCEEEEccCCc
Q 012165          243 NGVKFVKGASIKNLEAGSDG------RVAAVKLE---DGS--TIDADTIVIGIGAK  287 (469)
Q Consensus       243 ~gV~~~~~~~v~~i~~~~~~------~v~~v~~~---~g~--~i~~D~vi~a~G~~  287 (469)
                      .||+++.++.+.++..++++      ++.+|.+.   +|+  .+.++.||+|+|-.
T Consensus       152 ~gv~i~~~~~v~~L~~~~~g~~~~~~~v~Gv~~~~~~~G~~~~i~A~~VVlAtGg~  207 (540)
T 1chu_A          152 PNIRVLERTNAVDLIVSDKIGLPGTRRVVGAWVWNRNKETVETCHAKAVVLATGGA  207 (540)
T ss_dssp             TTEEEECSEEEEEEEEGGGTTCCSSCBEEEEEEEETTTTEEEEEECSEEEECCCCC
T ss_pred             CCCEEEeCcEEEEEEEcCCCCcccCCEEEEEEEEEcCCCcEEEEEcCeEEECCCCc
Confidence            68999999999999863334      67666664   564  68999999999954

>2rgh_A Alpha-glycerophosphate oxidase; flavoprotein oxidase, oxidoreductase; HET: FAD; 2.30A {Streptococcus SP} PDB: 2rgo_A*

Probab=96.07  E-value=0.03  Score=57.61  Aligned_cols=29  Identities=28%  Similarity=0.484  Sum_probs=26.5

Q ss_pred             cCCeEEEEcCChHHHHHHHHHHhCCCeEe
Q 012165          206 KAKKVVVVGGGYIGMEVAAAAVGWKLDTT  234 (469)
Q Consensus       206 ~~~~vvVvG~G~~g~e~A~~l~~~g~~v~  234 (469)
                      ....|+|||||.+|+-+|..|+++|.+|.
T Consensus        31 ~~~DVvVIGgGi~G~~~A~~La~rG~~V~   59 (571)
T 2rgh_A           31 EELDLLIIGGGITGAGVAVQAAASGIKTG   59 (571)
T ss_dssp             SCBSEEEECCSHHHHHHHHHHHHTTCCEE
T ss_pred             CCCCEEEECcCHHHHHHHHHHHHCCCcEE
Confidence            35689999999999999999999999887

>3c4n_A Uncharacterized protein DR_0571; alpha-beta protein, structural genomics, PSI-2, protein structure initiative; HET: ADP; 2.40A {Deinococcus radiodurans R1}

Probab=95.88  E-value=0.0099  Score=58.35  Aligned_cols=54  Identities=22%  Similarity=0.300  Sum_probs=34.7

Q ss_pred             HHcCcEEEcCCeEE---------EEEeCCCCcEEEEEcCCCCEEeCCEEEEccCCccCCchhh-hcCC
Q 012165          241 QQNGVKFVKGASIK---------NLEAGSDGRVAAVKLEDGSTIDADTIVIGIGAKPTVSPFE-RVGL  298 (469)
Q Consensus       241 ~~~gV~~~~~~~v~---------~i~~~~~~~v~~v~~~~g~~i~~D~vi~a~G~~p~~~~~~-~~gl  298 (469)
                      ++.|++++.+++|+         ++..+ ++.+ .|.+.+| ++.+|.||+|+|.... .+++ .+++
T Consensus       183 ~~~Gv~i~~~~~v~~~~g~~~~~~i~~~-~~~v-~v~~~~g-~i~a~~VV~A~G~~s~-~l~~~~~g~  246 (405)
T 3c4n_A          183 IGQGAGLLLNTRAELVPGGVRLHRLTVT-NTHQ-IVVHETR-QIRAGVIIVAAGAAGP-ALVEQGLGL  246 (405)
T ss_dssp             HTTTCEEECSCEEEEETTEEEEECBCC---------CBCCE-EEEEEEEEECCGGGHH-HHHHHHHCC
T ss_pred             HHCCCEEEcCCEEEeccccccccceEee-CCeE-EEEECCc-EEECCEEEECCCccHH-HHHHHhcCC
Confidence            34689999999888         77643 3444 5666666 7999999999998653 3444 4443

>3qvp_A Glucose oxidase; oxidoreductase; HET: NAG BMA MAN FAD; 1.20A {Aspergillus niger} PDB: 1gal_A* 1cf3_A* 3qvr_A*

Probab=95.87  E-value=0.0048  Score=63.50  Aligned_cols=60  Identities=17%  Similarity=0.359  Sum_probs=42.8

Q ss_pred             HHHHcCcEEEcCCeEEEEEeCC---CCcEEEEEcC--CCC--EEeCC-EEEEccCCccCCchhhhcCC
Q 012165          239 LYQQNGVKFVKGASIKNLEAGS---DGRVAAVKLE--DGS--TIDAD-TIVIGIGAKPTVSPFERVGL  298 (469)
Q Consensus       239 ~l~~~gV~~~~~~~v~~i~~~~---~~~v~~v~~~--~g~--~i~~D-~vi~a~G~~p~~~~~~~~gl  298 (469)
                      .+++.|+++++++.|++|.-++   ++++++|++.  +|+  ++.+. .||+|.|.--...+|.-+|+
T Consensus       236 ~~~r~NL~V~t~a~V~rIl~d~~~~~~ra~GV~~~~~~G~~~~v~A~kEVILsAGa~~SPqLL~lSGI  303 (583)
T 3qvp_A          236 NYQRPNLQVLTGQYVGKVLLSQNGTTPRAVGVEFGTHKGNTHNVYAKHEVLLAAGSAVSPTILEYSGI  303 (583)
T ss_dssp             TTTCTTEEEECSCEEEEEEEECSSSSCEEEEEEEESSTTCEEEEEEEEEEEECSCTTTHHHHHHHTTB
T ss_pred             hhcCCCcEEEcCCEEEEEEeccCCCCCEEEEEEEEecCCcEEEEEECCEEEEeCCccCCHHHHHHcCC
Confidence            3456899999999999997543   5678888874  564  46676 69999997644455544443

>2qcu_A Aerobic glycerol-3-phosphate dehydrogenase; glycerol-3-phoshate dehydrogenase, oxidoreductase; HET: BOG FAD TAM; 1.75A {Escherichia coli} PDB: 2r45_A* 2r46_A* 2r4e_A* 2r4j_A*

Probab=95.86  E-value=0.028  Score=56.86  Aligned_cols=47  Identities=13%  Similarity=0.154  Sum_probs=35.7

Q ss_pred             HHcCcEEEcCCeEEEEEeCCCCcEEEEEc---CCCC--EEeCCEEEEccCCccC
Q 012165          241 QQNGVKFVKGASIKNLEAGSDGRVAAVKL---EDGS--TIDADTIVIGIGAKPT  289 (469)
Q Consensus       241 ~~~gV~~~~~~~v~~i~~~~~~~v~~v~~---~~g~--~i~~D~vi~a~G~~p~  289 (469)
                      ++.|++++.+++|+++..++  .+..|.+   .+|+  ++.+|.||+|+|....
T Consensus       160 ~~~Gv~i~~~~~V~~l~~~~--~~~~V~~~d~~~G~~~~i~A~~VV~AtG~~s~  211 (501)
T 2qcu_A          160 VRKGGEVLTRTRATSARREN--GLWIVEAEDIDTGKKYSWQARGLVNATGPWVK  211 (501)
T ss_dssp             HHTTCEEECSEEEEEEEEET--TEEEEEEEETTTCCEEEEEESCEEECCGGGHH
T ss_pred             HHcCCEEEcCcEEEEEEEeC--CEEEEEEEECCCCCEEEEECCEEEECCChhHH
Confidence            34588999999999998643  4456666   3565  7999999999998653

>1kf6_A Fumarate reductase flavoprotein; respiration, fumarate reductace, succinate dehydrogenase, CO quinol, quinone, oxidoreductase; HET: FAD HQO CE1 1PE; 2.70A {Escherichia coli} SCOP: a.7.3.1 c.3.1.4 d.168.1.1 PDB: 1kfy_A* 1l0v_A* 2b76_A* 3cir_A* 3p4p_A* 3p4q_A* 3p4r_A* 3p4s_A*

Probab=95.86  E-value=0.019  Score=59.41  Aligned_cols=45  Identities=20%  Similarity=0.375  Sum_probs=34.7

Q ss_pred             HcC-cEEEcCCeEEEEEeCCCCcEEEEE---cCCCC--EEeCCEEEEccCCc
Q 012165          242 QNG-VKFVKGASIKNLEAGSDGRVAAVK---LEDGS--TIDADTIVIGIGAK  287 (469)
Q Consensus       242 ~~g-V~~~~~~~v~~i~~~~~~~v~~v~---~~~g~--~i~~D~vi~a~G~~  287 (469)
                      +.| |+++.++.+.++..+ ++++.++.   +.+|+  .+.++.||+|+|..
T Consensus       146 ~~gnv~i~~~~~v~~l~~~-~g~v~Gv~~~~~~~G~~~~i~A~~VVlAtGg~  196 (602)
T 1kf6_A          146 QFPQIQRFDEHFVLDILVD-DGHVRGLVAMNMMEGTLVQIRANAVVMATGGA  196 (602)
T ss_dssp             TCTTEEEEETEEEEEEEEE-TTEEEEEEEEETTTTEEEEEECSCEEECCCCC
T ss_pred             hCCCcEEEeCCEEEEEEEe-CCEEEEEEEEEcCCCcEEEEEcCeEEECCCCC
Confidence            456 999999999999754 56665554   36776  68999999999963

>1n4w_A CHOD, cholesterol oxidase; flavoenzyme, steroid metabolism, oxidoreductase, atomic RESO; HET: FAD; 0.92A {Streptomyces SP} SCOP: c.3.1.2 d.16.1.1 PDB: 1b4v_A* 1n1p_A* 1n4u_A* 1n4v_A* 1mxt_A* 2gew_A* 1b8s_A* 3gyi_A* 1cc2_A* 3gyj_A* 1ijh_A* 1cbo_A* 3b3r_A* 3b6d_A* 3cnj_A*

Probab=95.85  E-value=0.0062  Score=61.74  Aligned_cols=59  Identities=19%  Similarity=0.264  Sum_probs=43.2

Q ss_pred             HHHHc-CcEEEcCCeEEEEEeCCCC-cEEEEEcC--CC-----CEEeCCEEEEccCCccCCchhhhcC
Q 012165          239 LYQQN-GVKFVKGASIKNLEAGSDG-RVAAVKLE--DG-----STIDADTIVIGIGAKPTVSPFERVG  297 (469)
Q Consensus       239 ~l~~~-gV~~~~~~~v~~i~~~~~~-~v~~v~~~--~g-----~~i~~D~vi~a~G~~p~~~~~~~~g  297 (469)
                      ..+++ ++++++++.|++|..++++ ++.+|++.  +|     .++.++.||+|.|.-....+|..+|
T Consensus       230 ~a~~~~n~~i~~~~~V~~i~~~~~g~~~~gV~~~~~~g~~~~~~~v~A~~VIlaaG~~~s~~lL~~Sg  297 (504)
T 1n4w_A          230 AALGTGKVTIQTLHQVKTIRQTKDGGYALTVEQKDTDGKLLATKEISCRYLFLGAGSLGSTELLVRAR  297 (504)
T ss_dssp             HHHHTTSEEEEESEEEEEEEECTTSSEEEEEEEECTTCCEEEEEEEEEEEEEECSHHHHHHHHHHHHH
T ss_pred             HHHhcCCcEEEeCCEEEEEEECCCCCEEEEEEEeCCCCccceeEEEeeCEEEEccCCCCCHHHHHhcc
Confidence            33445 5999999999999865434 67888774  56     3688999999999864445655554

>2r0c_A REBC; flavin adenine dinucleotide, monooxygenase, oxidoreductase; HET: FAD; 1.80A {Lechevalieria aerocolonigenes} PDB: 2r0g_A* 2r0p_A* 3ept_A*

Probab=95.81  E-value=0.031  Score=57.21  Aligned_cols=27  Identities=26%  Similarity=0.517  Sum_probs=24.9

Q ss_pred             CeEEEEcCChHHHHHHHHHHhCCCeEe
Q 012165          208 KKVVVVGGGYIGMEVAAAAVGWKLDTT  234 (469)
Q Consensus       208 ~~vvVvG~G~~g~e~A~~l~~~g~~v~  234 (469)
                      .+|+|||+|++|+-+|..|++.|.++.
T Consensus        27 ~dVlIVGaGpaGl~~A~~La~~G~~V~   53 (549)
T 2r0c_A           27 TDVLILGGGPVGMALALDLAHRQVGHL   53 (549)
T ss_dssp             EEEEEECCSHHHHHHHHHHHHTTCCEE
T ss_pred             CCEEEECcCHHHHHHHHHHHHCCCCEE
Confidence            479999999999999999999998876

>2e5v_A L-aspartate oxidase; archaea, oxidoreductase; HET: FAD; 2.09A {Sulfolobus tokodaii}

Probab=95.79  E-value=0.026  Score=56.61  Aligned_cols=47  Identities=21%  Similarity=0.461  Sum_probs=35.0

Q ss_pred             HHcCcEEEcCCeEEEEEeCCCCcEEEEEcC-CCCEEeCCEEEEccCCccC
Q 012165          241 QQNGVKFVKGASIKNLEAGSDGRVAAVKLE-DGSTIDADTIVIGIGAKPT  289 (469)
Q Consensus       241 ~~~gV~~~~~~~v~~i~~~~~~~v~~v~~~-~g~~i~~D~vi~a~G~~p~  289 (469)
                      ++.||+++.++.+ ++..+ ++.+.++... ++.++.+|.||+|+|..+.
T Consensus       130 ~~~gv~i~~~~~v-~l~~~-~~~v~Gv~v~~~~g~~~a~~VVlAtGg~~~  177 (472)
T 2e5v_A          130 REEGIPIIEDRLV-EIRVK-DGKVTGFVTEKRGLVEDVDKLVLATGGYSY  177 (472)
T ss_dssp             HHTTCCEECCCEE-EEEEE-TTEEEEEEETTTEEECCCSEEEECCCCCGG
T ss_pred             HhCCCEEEECcEE-EEEEe-CCEEEEEEEEeCCCeEEeeeEEECCCCCcc
Confidence            5679999999999 88754 5666666543 2335789999999998764

>1coy_A Cholesterol oxidase; oxidoreductase(oxygen receptor); HET: AND FAD; 1.80A {Brevibacterium sterolicum} SCOP: c.3.1.2 d.16.1.1 PDB: 3cox_A*

Probab=95.78  E-value=0.0078  Score=61.06  Aligned_cols=57  Identities=9%  Similarity=0.162  Sum_probs=42.1

Q ss_pred             HHcCcEEEcCCeEEEEEeCCCC-cEEEEEcC--CC-----CEEeCCEEEEccCCccCCchhhhcC
Q 012165          241 QQNGVKFVKGASIKNLEAGSDG-RVAAVKLE--DG-----STIDADTIVIGIGAKPTVSPFERVG  297 (469)
Q Consensus       241 ~~~gV~~~~~~~v~~i~~~~~~-~v~~v~~~--~g-----~~i~~D~vi~a~G~~p~~~~~~~~g  297 (469)
                      +..++++++++.|++|..++++ ++.+|++.  +|     .++.++.||+|.|.--...+|..+|
T Consensus       238 ~~~n~~i~~~~~v~~i~~~~~g~~~~gV~~~~~~g~~~~~~~~~A~~VIlaaGa~~sp~lL~~Sg  302 (507)
T 1coy_A          238 ATGKLTITTLHRVTKVAPATGSGYSVTMEQIDEQGNVVATKVVTADRVFFAAGSVGTSKLLVSMK  302 (507)
T ss_dssp             HTTCEEEECSEEEEEEEECSSSSEEEEEEEECTTSCEEEEEEEEEEEEEECSHHHHHHHHHHHHH
T ss_pred             hcCCcEEEeCCEEEEEEECCCCCEEEEEEEeCCCCcccccEEEEeCEEEEccCccCCHHHHHhcc
Confidence            3446999999999999875444 67788774  55     3688999999999764445655554

>2h88_A Succinate dehydrogenase flavoprotein subunit; complex II, membrane protein, heme protein, iron sulfur PROT cytochrome B, oxidoreductase; HET: FAD BHG HEM UNL; 1.74A {Gallus gallus} PDB: 1yq4_A* 1yq3_A* 2fbw_A* 2h89_A* 2wqy_A* 1zoy_A* 1zp0_A* 3abv_A* 3ae1_A* 3ae2_A* 3ae3_A* 3ae4_A* 3ae5_A* 3ae6_A* 3ae7_A* 3ae8_A* 3ae9_A* 3aea_A* 3aeb_A* 3aec_A* ...

Probab=95.70  E-value=0.033  Score=57.75  Aligned_cols=46  Identities=22%  Similarity=0.267  Sum_probs=35.6

Q ss_pred             HcCcEEEcCCeEEEEEeCCCCcEEEEEc---CCCC--EEeCCEEEEccCCcc
Q 012165          242 QNGVKFVKGASIKNLEAGSDGRVAAVKL---EDGS--TIDADTIVIGIGAKP  288 (469)
Q Consensus       242 ~~gV~~~~~~~v~~i~~~~~~~v~~v~~---~~g~--~i~~D~vi~a~G~~p  288 (469)
                      +.||+++.++.+.++..+ ++++.+|..   .+|+  .+.++.||+|+|-..
T Consensus       167 ~~gv~i~~~~~v~~Li~~-~g~v~Gv~~~~~~~G~~~~i~A~~VVlATGG~~  217 (621)
T 2h88_A          167 RYDTSYFVEYFALDLLME-NGECRGVIALCIEDGTIHRFRAKNTVIATGGYG  217 (621)
T ss_dssp             TSCCEEEETEEEEEEEEE-TTEEEEEEEEETTTCCEEEEEEEEEEECCCCCG
T ss_pred             hCCCEEEEceEEEEEEEE-CCEEEEEEEEEcCCCcEEEEEcCeEEECCCccc
Confidence            468999999999998753 567767665   4675  689999999999643

>1gpe_A Protein (glucose oxidase); oxidoreductase(flavoprotein); HET: NAG BMA MAN FAD; 1.80A {Penicillium amagasakiense} SCOP: c.3.1.2 d.16.1.1

Probab=95.55  E-value=0.009  Score=61.72  Aligned_cols=59  Identities=14%  Similarity=0.281  Sum_probs=43.2

Q ss_pred             HHHcCcEEEcCCeEEEEEeCCC---CcEEEEEcC--CCC--EEeC-CEEEEccCCccCCchhhhcCC
Q 012165          240 YQQNGVKFVKGASIKNLEAGSD---GRVAAVKLE--DGS--TIDA-DTIVIGIGAKPTVSPFERVGL  298 (469)
Q Consensus       240 l~~~gV~~~~~~~v~~i~~~~~---~~v~~v~~~--~g~--~i~~-D~vi~a~G~~p~~~~~~~~gl  298 (469)
                      .++.|+++++++.|++|..+++   +++.+|+..  +|+  .+.+ +.||+|+|.-.+..+|..+|+
T Consensus       241 ~~~~nl~i~~~~~v~~l~~~~~~~~~~~~GV~~~~~~g~~~~v~A~k~VILaaG~~~sp~lL~~SGI  307 (587)
T 1gpe_A          241 YQRSNLEILTGQMVGKVLFKQTASGPQAVGVNFGTNKAVNFDVFAKHEVLLAAGSAISPLILEYSGI  307 (587)
T ss_dssp             TTCTTEEEEESCEEEEEEEEEETTEEEEEEEEEEEETTEEEEEEEEEEEEECSCTTTHHHHHHHTTE
T ss_pred             hcCCCcEEEcCCEEEEEEECCCCCCCEEEEEEEEeCCCcEEEEEecccEEEccCCCCCHHHHHhCCC
Confidence            3467999999999999975432   467788764  564  5678 899999998755556655554

>1pn0_A Phenol 2-monooxygenase; two dimers, TLS refinement, oxidoreductase; HET: FAD; 1.70A {Trichosporon cutaneum} SCOP: c.3.1.2 c.47.1.10 d.16.1.2 PDB: 1foh_A*

Probab=95.53  E-value=0.03  Score=58.70  Aligned_cols=27  Identities=26%  Similarity=0.315  Sum_probs=24.7

Q ss_pred             CeEEEEcCChHHHHHHHHHHh-----CCCeEe
Q 012165          208 KKVVVVGGGYIGMEVAAAAVG-----WKLDTT  234 (469)
Q Consensus       208 ~~vvVvG~G~~g~e~A~~l~~-----~g~~v~  234 (469)
                      ..|+|||+|+.|+-+|..|++     .|.++.
T Consensus         9 ~dVlIVGaGpaGL~lA~~La~~~~~~~Gi~v~   40 (665)
T 1pn0_A            9 CDVLIVGAGPAGLMAARVLSEYVRQKPDLKVR   40 (665)
T ss_dssp             EEEEEECCSHHHHHHHHHHHHHHHHSTTCCEE
T ss_pred             CcEEEECcCHHHHHHHHHHhccccccCCCCEE
Confidence            369999999999999999999     898876

>2jbv_A Choline oxidase; alcohol oxidation, flavoenyzme oxidase, covalently linked FAD, C4A-adduct, flavoprotein, oxidoreductase; HET: FAO; 1.86A {Arthrobacter globiformis} PDB: 3nne_A* 3ljp_A*

Probab=95.51  E-value=0.0087  Score=61.28  Aligned_cols=58  Identities=24%  Similarity=0.396  Sum_probs=42.8

Q ss_pred             HHcCcEEEcCCeEEEEEeCCCCcEEEEEcCC---CC--EEeCC-EEEEccCCccCCchhhhcCC
Q 012165          241 QQNGVKFVKGASIKNLEAGSDGRVAAVKLED---GS--TIDAD-TIVIGIGAKPTVSPFERVGL  298 (469)
Q Consensus       241 ~~~gV~~~~~~~v~~i~~~~~~~v~~v~~~~---g~--~i~~D-~vi~a~G~~p~~~~~~~~gl  298 (469)
                      ++.|+++++++.|++|..++++++.+|++.+   |+  ++.++ .||+|+|.--...+|..+|+
T Consensus       220 ~~~~~~i~~~~~V~~i~~~~~~~~~GV~~~~~~~g~~~~i~A~k~VIlaaG~~~sp~lL~~SGi  283 (546)
T 2jbv_A          220 EQENFTLLTGLRARQLVFDADRRCTGVDIVDSAFGHTHRLTARNEVVLSTGAIDTPKLLMLSGI  283 (546)
T ss_dssp             TCTTEEEECSCEEEEEEECTTSBEEEEEEESSTTSCEEEEEEEEEEEECSHHHHHHHHHHHTTE
T ss_pred             cCCCcEEEeCCEEEEEEECCCCeEEEEEEEECCCCcEEEEEeCccEEEecCccCCchhhhhcCC
Confidence            4679999999999999865437787887744   53  68898 99999997433345555554

>3fim_B ARYL-alcohol oxidase; AAO, lignin degradation, oxidoreductase, flavoprotein; HET: FAD; 2.55A {Pleurotus eryngii}

Probab=95.40  E-value=0.0061  Score=62.53  Aligned_cols=63  Identities=16%  Similarity=0.253  Sum_probs=42.4

Q ss_pred             eHHHHHHcCcEEEcCCeEEEEEeC---CC-CcEEEEEcCC--C-C--EEeC-CEEEEccCCccCCchhhhcCC
Q 012165          236 YEQLYQQNGVKFVKGASIKNLEAG---SD-GRVAAVKLED--G-S--TIDA-DTIVIGIGAKPTVSPFERVGL  298 (469)
Q Consensus       236 ~~~~l~~~gV~~~~~~~v~~i~~~---~~-~~v~~v~~~~--g-~--~i~~-D~vi~a~G~~p~~~~~~~~gl  298 (469)
                      +...+++.++++++++.|++|.-+   ++ +++++|++.+  | +  ++.+ ..||+|.|.--...+|.-+|+
T Consensus       214 L~p~~~r~NL~Vlt~a~V~rIl~~~~~~g~~rA~GVe~~~~~g~~~~~v~A~kEVILsAGai~SPqlL~lSGI  286 (566)
T 3fim_B          214 LRPAQSRPNLSVLINAQVTKLVNSGTTNGLPAFRCVEYAEQEGAPTTTVCAKKEVVLSAGSVGTPILLQLSGI  286 (566)
T ss_dssp             HHHHTTCTTEEEESSCEEEEEECCEEETTEEECCEEEEESSTTSCCEEEEEEEEEEECCHHHHHHHHHHHTTE
T ss_pred             hhhhccCCCeEEECCCEEEEEEeecCCCCCCEEEEEEEEECCCceEEEEEeeeEEEEecCCcCChHHHHhcCC
Confidence            344456789999999999999854   12 5677787653  4 3  4666 679999996533345554444

>2bs2_A Quinol-fumarate reductase flavoprotein subunit A; 2Fe-2S, 3Fe-4S, 4Fe-4S, citric acid cycle, dihaem cytochrome B; HET: FAD HEM LMT; 1.78A {Wolinella succinogenes} SCOP: a.7.3.1 c.3.1.4 d.168.1.1 PDB: 2bs3_A* 1e7p_A* 2bs4_A* 1qlb_A*

Probab=95.31  E-value=0.08  Score=55.32  Aligned_cols=48  Identities=19%  Similarity=0.187  Sum_probs=36.6

Q ss_pred             HHHcCcEEEcCCeEEEEEeCCCCcEEEEEc---CCCC--EEeCCEEEEccCCcc
Q 012165          240 YQQNGVKFVKGASIKNLEAGSDGRVAAVKL---EDGS--TIDADTIVIGIGAKP  288 (469)
Q Consensus       240 l~~~gV~~~~~~~v~~i~~~~~~~v~~v~~---~~g~--~i~~D~vi~a~G~~p  288 (469)
                      +++.||+++.++.+.++..+ ++++.+|..   .+|+  .+.++.||+|+|--.
T Consensus       168 a~~~gv~i~~~~~v~~L~~~-~g~v~Gv~~~~~~~G~~~~i~A~~VVlATGG~~  220 (660)
T 2bs2_A          168 CLKLGVSIQDRKEAIALIHQ-DGKCYGAVVRDLVTGDIIAYVAKGTLIATGGYG  220 (660)
T ss_dssp             HHHHTCEEECSEEEEEEEEE-TTEEEEEEEEETTTCCEEEEECSEEEECCCCCG
T ss_pred             HHhCCCEEEECcEEEEEEec-CCEEEEEEEEECCCCcEEEEEcCEEEEccCcch
Confidence            34568999999999999753 566666654   5675  489999999999643

>3fwz_A Inner membrane protein YBAL; TRKA-N domain, E.coli, structural genomics, PSI-2, Pro structure initiative; HET: MSE AMP; 1.79A {Escherichia coli k-12}

Probab=95.15  E-value=0.025  Score=46.37  Aligned_cols=37  Identities=11%  Similarity=0.271  Sum_probs=32.2

Q ss_pred             CCCCCcEEEEcCcHHHHHHHHHHHHcCCCCCcEEEEcCCC
Q 012165           48 ANENREFVIVGGGNAAGYAARTFVEHGMADGRLCIVSKEA   87 (469)
Q Consensus        48 ~~~~~~vvIIGgG~AGl~aA~~L~~~g~~~~~V~vie~~~   87 (469)
                      ...+.+|+|+|.|.-|...|..|.+.|+   +|+++|.++
T Consensus         4 ~~~~~~viIiG~G~~G~~la~~L~~~g~---~v~vid~~~   40 (140)
T 3fwz_A            4 VDICNHALLVGYGRVGSLLGEKLLASDI---PLVVIETSR   40 (140)
T ss_dssp             CCCCSCEEEECCSHHHHHHHHHHHHTTC---CEEEEESCH
T ss_pred             ccCCCCEEEECcCHHHHHHHHHHHHCCC---CEEEEECCH
Confidence            3445789999999999999999999987   799999764

>4gut_A Lysine-specific histone demethylase 1B; histone demethylase; HET: FAD PGE; 2.00A {Homo sapiens} PDB: 4gur_A* 4gus_A* 4guu_A* 4fwe_A* 4fwf_A* 4fwj_A* 4gu1_A*

Probab=95.01  E-value=0.075  Score=56.56  Aligned_cols=41  Identities=17%  Similarity=0.366  Sum_probs=34.4

Q ss_pred             CcEEEcCCeEEEEEeCCCCcEEEEEcCCCCEEeCCEEEEccCC
Q 012165          244 GVKFVKGASIKNLEAGSDGRVAAVKLEDGSTIDADTIVIGIGA  286 (469)
Q Consensus       244 gV~~~~~~~v~~i~~~~~~~v~~v~~~~g~~i~~D~vi~a~G~  286 (469)
                      |+++++++.|++|+.++++ + .|++.+|+++.+|.||+|++.
T Consensus       543 gl~I~l~t~V~~I~~~~~~-v-~V~~~~G~~i~Ad~VIvA~P~  583 (776)
T 4gut_A          543 GLDIQLKSPVQCIDYSGDE-V-QVTTTDGTGYSAQKVLVTVPL  583 (776)
T ss_dssp             TSCEESSCCEEEEECSSSS-E-EEEETTCCEEEESEEEECCCH
T ss_pred             CCcEEcCCeeEEEEEcCCE-E-EEEECCCcEEEcCEEEECCCH
Confidence            7889999999999865444 4 588889989999999999864

>3i6d_A Protoporphyrinogen oxidase; protein-inhibitor complex, cytoplasm, FAD, flavoprotein, oxidoreductase, porphyrin biosynthesis; HET: FAD ACJ; 2.90A {Bacillus subtilis}

Probab=94.96  E-value=0.064  Score=53.31  Aligned_cols=28  Identities=36%  Similarity=0.478  Sum_probs=25.4

Q ss_pred             CCeEEEEcCChHHHHHHHHHHhCC------CeEe
Q 012165          207 AKKVVVVGGGYIGMEVAAAAVGWK------LDTT  234 (469)
Q Consensus       207 ~~~vvVvG~G~~g~e~A~~l~~~g------~~v~  234 (469)
                      .++|+|||+|.+|+-+|..|++.|      .+|+
T Consensus         5 ~~dVvIIGaGiaGLsaA~~L~~~G~~~~~~~~V~   38 (470)
T 3i6d_A            5 KKHVVIIGGGITGLAAAFYMEKEIKEKNLPLELT   38 (470)
T ss_dssp             CEEEEEECCSHHHHHHHHHHHHHHTTTTCSEEEE
T ss_pred             CCcEEEECCCHHHHHHHHHHHHhccccCCCCCEE
Confidence            358999999999999999999998      7876

>4b63_A L-ornithine N5 monooxygenase; oxidoreductase, siderophore, flavin; HET: FAD NAP; 1.90A {Aspergillus fumigatus} PDB: 4b64_A* 4b65_A* 4b66_A* 4b67_A* 4b68_A* 4b69_A*

Probab=94.88  E-value=0.026  Score=57.03  Aligned_cols=50  Identities=18%  Similarity=0.240  Sum_probs=35.1

Q ss_pred             HcCcEEEcCCeEEEEEeCCCC------cEEEEEcCCC-----CEEeCCEEEEccCCccCCc
Q 012165          242 QNGVKFVKGASIKNLEAGSDG------RVAAVKLEDG-----STIDADTIVIGIGAKPTVS  291 (469)
Q Consensus       242 ~~gV~~~~~~~v~~i~~~~~~------~v~~v~~~~g-----~~i~~D~vi~a~G~~p~~~  291 (469)
                      +.+..++++++|++++..+.+      ....|+..++     +++.++.||+|+|..|..+
T Consensus       157 ~~~~~vrf~~~V~~v~~~~~~~~~~~~~~~~V~~~~~~~g~~~~~~ar~vVlatG~~P~iP  217 (501)
T 4b63_A          157 QFSDVVAYGEEVVEVIPGKSDPSSSVVDFFTVRSRNVETGEISARRTRKVVIAIGGTAKMP  217 (501)
T ss_dssp             TTGGGEEESEEEEEEEEECSSTTSSCBCEEEEEEEETTTCCEEEEEEEEEEECCCCEECCC
T ss_pred             HcCCceEcceEEEeeccccccccccccceEEEEEecCCCceEEEEEeCEEEECcCCCCCCC
Confidence            345668899999999864322      1234555443     3688999999999988755

>1jnr_A Adenylylsulfate reductase; oxidoreductase; HET: FAD; 1.60A {Archaeoglobus fulgidus dsm 4304} SCOP: a.7.3.1 c.3.1.4 d.168.1.1 PDB: 1jnz_A* 2fjb_A* 2fja_A* 2fjd_A* 2fje_A*

Probab=94.82  E-value=0.095  Score=54.66  Aligned_cols=46  Identities=15%  Similarity=0.216  Sum_probs=35.2

Q ss_pred             Hc-Cc-EEEcCCeEEEEEeCCC--CcEEEEEc---CCCC--EEeCCEEEEccCCc
Q 012165          242 QN-GV-KFVKGASIKNLEAGSD--GRVAAVKL---EDGS--TIDADTIVIGIGAK  287 (469)
Q Consensus       242 ~~-gV-~~~~~~~v~~i~~~~~--~~v~~v~~---~~g~--~i~~D~vi~a~G~~  287 (469)
                      +. || +++.++.+.++..+++  +++.+|..   .+|+  .+.++.||+|+|-.
T Consensus       163 ~~~gv~~i~~~~~v~~L~~~~~~~g~v~Gv~~~~~~~g~~~~i~A~~VVlAtGG~  217 (643)
T 1jnr_A          163 MAVGEENIYERVFIFELLKDNNDPNAVAGAVGFSVREPKFYVFKAKAVILATGGA  217 (643)
T ss_dssp             HHHCGGGEECSEEEEEEEECTTCTTBEEEEEEEESSSSCEEEEECSEEEECCCCB
T ss_pred             hcCCCcEEEecCEEEEEEEcCCccceeEEEEEEEecCCcEEEEEcCEEEECCCcc
Confidence            44 89 9999999999986433  27777653   5665  68999999999964

>3lk7_A UDP-N-acetylmuramoylalanine--D-glutamate ligase; agalacitae, PSI, MCSG, structural genomics, midwest center for structural genomics; HET: MSE; 1.50A {Streptococcus agalactiae}

Probab=94.62  E-value=0.017  Score=57.52  Aligned_cols=72  Identities=24%  Similarity=0.197  Sum_probs=54.7

Q ss_pred             cCCeEEEEcCChHHHHHHHHHHhCCCeEe----------eeHHHHHHcCcEEEcCCeEEEEEeCCCCcEEEEEcCCCCEE
Q 012165          206 KAKKVVVVGGGYIGMEVAAAAVGWKLDTT----------RYEQLYQQNGVKFVKGASIKNLEAGSDGRVAAVKLEDGSTI  275 (469)
Q Consensus       206 ~~~~vvVvG~G~~g~e~A~~l~~~g~~v~----------~~~~~l~~~gV~~~~~~~v~~i~~~~~~~v~~v~~~~g~~i  275 (469)
                      .++++.|+|.|.+|+.+|..|.++|.+|+          ...+.|++.||+++.+....++            +.+    
T Consensus         8 ~~k~v~viG~G~sG~s~A~~l~~~G~~V~~~D~~~~~~~~~~~~L~~~gi~~~~g~~~~~~------------~~~----   71 (451)
T 3lk7_A            8 ENKKVLVLGLARSGEAAARLLAKLGAIVTVNDGKPFDENPTAQSLLEEGIKVVCGSHPLEL------------LDE----   71 (451)
T ss_dssp             TTCEEEEECCTTTHHHHHHHHHHTTCEEEEEESSCGGGCHHHHHHHHTTCEEEESCCCGGG------------GGS----
T ss_pred             CCCEEEEEeeCHHHHHHHHHHHhCCCEEEEEeCCcccCChHHHHHHhCCCEEEECCChHHh------------hcC----
Confidence            57899999999999999999999999998          1235688889998876421100            010    


Q ss_pred             eCCEEEEccCCccCCchh
Q 012165          276 DADTIVIGIGAKPTVSPF  293 (469)
Q Consensus       276 ~~D~vi~a~G~~p~~~~~  293 (469)
                      .+|+||+++|..++.+.+
T Consensus        72 ~~d~vv~spgi~~~~p~~   89 (451)
T 3lk7_A           72 DFCYMIKNPGIPYNNPMV   89 (451)
T ss_dssp             CEEEEEECTTSCTTSHHH
T ss_pred             CCCEEEECCcCCCCChhH
Confidence            279999999998887653

>1id1_A Putative potassium channel protein; RCK domain, E.coli potassium channel, BK channel, rossmann fold, membrane protein; 2.40A {Escherichia coli} SCOP: c.2.1.9

Probab=94.61  E-value=0.046  Score=45.42  Aligned_cols=34  Identities=15%  Similarity=0.256  Sum_probs=30.5

Q ss_pred             CCCcEEEEcCcHHHHHHHHHHHHcCCCCCcEEEEcCC
Q 012165           50 ENREFVIVGGGNAAGYAARTFVEHGMADGRLCIVSKE   86 (469)
Q Consensus        50 ~~~~vvIIGgG~AGl~aA~~L~~~g~~~~~V~vie~~   86 (469)
                      .+.+++|+|+|.-|...+..|.+.|+   +|++++++
T Consensus         2 ~~~~vlI~G~G~vG~~la~~L~~~g~---~V~vid~~   35 (153)
T 1id1_A            2 RKDHFIVCGHSILAINTILQLNQRGQ---NVTVISNL   35 (153)
T ss_dssp             CCSCEEEECCSHHHHHHHHHHHHTTC---CEEEEECC
T ss_pred             CCCcEEEECCCHHHHHHHHHHHHCCC---CEEEEECC
Confidence            35689999999999999999999987   79999975

>3llv_A Exopolyphosphatase-related protein; NAD(P)-binding, rossmann, PSI, M structural genomics; 1.70A {Archaeoglobus fulgidus}

Probab=94.44  E-value=0.037  Score=45.20  Aligned_cols=34  Identities=21%  Similarity=0.364  Sum_probs=30.3

Q ss_pred             CCcEEEEcCcHHHHHHHHHHHHcCCCCCcEEEEcCCC
Q 012165           51 NREFVIVGGGNAAGYAARTFVEHGMADGRLCIVSKEA   87 (469)
Q Consensus        51 ~~~vvIIGgG~AGl~aA~~L~~~g~~~~~V~vie~~~   87 (469)
                      +.+|+|+|+|.-|...|..|.+.|+   +|+++|.++
T Consensus         6 ~~~v~I~G~G~iG~~la~~L~~~g~---~V~~id~~~   39 (141)
T 3llv_A            6 RYEYIVIGSEAAGVGLVRELTAAGK---KVLAVDKSK   39 (141)
T ss_dssp             CCSEEEECCSHHHHHHHHHHHHTTC---CEEEEESCH
T ss_pred             CCEEEEECCCHHHHHHHHHHHHCCC---eEEEEECCH
Confidence            4689999999999999999999987   799998653

>3p1w_A Rabgdi protein; GDI RAB, malaria, structural genomics consortium, SGC, trans PF10_0345, protein transport; 1.85A {Plasmodium falciparum 3D7}

Probab=94.38  E-value=0.051  Score=54.24  Aligned_cols=41  Identities=15%  Similarity=0.296  Sum_probs=36.3

Q ss_pred             CCCCCcEEEEcCcHHHHHHHHHHHHcCCCCCcEEEEcCCCCCCC
Q 012165           48 ANENREFVIVGGGNAAGYAARTFVEHGMADGRLCIVSKEAYAPY   91 (469)
Q Consensus        48 ~~~~~~vvIIGgG~AGl~aA~~L~~~g~~~~~V~vie~~~~~~~   91 (469)
                      ++..+||+|||+|.+|+++|..|++.|.   +|+++|++++.+.
T Consensus        17 ~~~~~dv~iiG~G~~g~~~a~~l~~~g~---~v~~~e~~~~~Gg   57 (475)
T 3p1w_A           17 QGEHYDVIILGTGLKECILSGLLSHYGK---KILVLDRNPYYGG   57 (475)
T ss_dssp             CCCEEEEEEECCSHHHHHHHHHHHHTTC---CEEEECSSSSSCG
T ss_pred             ccccCCEEEECCCHHHHHHHHHHHHCCC---cEEEEeccCCCCC
Confidence            4456899999999999999999999997   7999999987653

>3eag_A UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl-ME diaminopimelate ligase; UDP-N-acetylmuramate:L-alanyl-G glutamyl-MESO-diaminopimelate ligase; 2.55A {Neisseria meningitidis MC58}

Probab=94.37  E-value=0.035  Score=52.71  Aligned_cols=73  Identities=25%  Similarity=0.290  Sum_probs=54.5

Q ss_pred             cCCeEEEEcCChHHHH-HHHHHHhCCCeEe--------eeHHHHHHcCcEEEcCCeEEEEEeCCCCcEEEEEcCCCCEEe
Q 012165          206 KAKKVVVVGGGYIGME-VAAAAVGWKLDTT--------RYEQLYQQNGVKFVKGASIKNLEAGSDGRVAAVKLEDGSTID  276 (469)
Q Consensus       206 ~~~~vvVvG~G~~g~e-~A~~l~~~g~~v~--------~~~~~l~~~gV~~~~~~~v~~i~~~~~~~v~~v~~~~g~~i~  276 (469)
                      ..+++.+||.|.+|+. +|..|.++|.+|+        ...+.|++.|++++.+.....             +..   ..
T Consensus         3 ~~~~i~~iGiGg~Gms~~A~~L~~~G~~V~~~D~~~~~~~~~~L~~~gi~v~~g~~~~~-------------l~~---~~   66 (326)
T 3eag_A            3 AMKHIHIIGIGGTFMGGLAAIAKEAGFEVSGCDAKMYPPMSTQLEALGIDVYEGFDAAQ-------------LDE---FK   66 (326)
T ss_dssp             CCCEEEEESCCSHHHHHHHHHHHHTTCEEEEEESSCCTTHHHHHHHTTCEEEESCCGGG-------------GGS---CC
T ss_pred             CCcEEEEEEECHHHHHHHHHHHHhCCCEEEEEcCCCCcHHHHHHHhCCCEEECCCCHHH-------------cCC---CC
Confidence            3578999999999996 8899999999998        234678888999876532100             110   24


Q ss_pred             CCEEEEccCCccCCchhh
Q 012165          277 ADTIVIGIGAKPTVSPFE  294 (469)
Q Consensus       277 ~D~vi~a~G~~p~~~~~~  294 (469)
                      +|+||.++|..|+.+.+.
T Consensus        67 ~d~vV~Spgi~~~~p~~~   84 (326)
T 3eag_A           67 ADVYVIGNVAKRGMDVVE   84 (326)
T ss_dssp             CSEEEECTTCCTTCHHHH
T ss_pred             CCEEEECCCcCCCCHHHH
Confidence            899999999998876543

>2g1u_A Hypothetical protein TM1088A; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: AMP; 1.50A {Thermotoga maritima} PDB: 3l4b_A*

Probab=94.34  E-value=0.047  Score=45.49  Aligned_cols=37  Identities=22%  Similarity=0.338  Sum_probs=31.5

Q ss_pred             CCCCCcEEEEcCcHHHHHHHHHHHHcCCCCCcEEEEcCCC
Q 012165           48 ANENREFVIVGGGNAAGYAARTFVEHGMADGRLCIVSKEA   87 (469)
Q Consensus        48 ~~~~~~vvIIGgG~AGl~aA~~L~~~g~~~~~V~vie~~~   87 (469)
                      .....+|+|+|+|.-|...|..|++.|+   +|+++++++
T Consensus        16 ~~~~~~v~IiG~G~iG~~la~~L~~~g~---~V~vid~~~   52 (155)
T 2g1u_A           16 KQKSKYIVIFGCGRLGSLIANLASSSGH---SVVVVDKNE   52 (155)
T ss_dssp             -CCCCEEEEECCSHHHHHHHHHHHHTTC---EEEEEESCG
T ss_pred             ccCCCcEEEECCCHHHHHHHHHHHhCCC---eEEEEECCH
Confidence            3445789999999999999999999987   799998764

>3dje_A Fructosyl amine: oxygen oxidoreductase; fructosyl-amino acid, amadoriase, deglycation, fructosamine oxidase; HET: MSE FAD FSA EPE; 1.60A {Aspergillus fumigatus} PDB: 3djd_A*

Probab=94.14  E-value=0.069  Score=52.73  Aligned_cols=52  Identities=27%  Similarity=0.338  Sum_probs=44.0

Q ss_pred             eHHHHHHcCcEEEcCC---eEEEEEeCCCCcEEEEEcCCCCEEeCCEEEEccCCcc
Q 012165          236 YEQLYQQNGVKFVKGA---SIKNLEAGSDGRVAAVKLEDGSTIDADTIVIGIGAKP  288 (469)
Q Consensus       236 ~~~~l~~~gV~~~~~~---~v~~i~~~~~~~v~~v~~~~g~~i~~D~vi~a~G~~p  288 (469)
                      +.+.+++.|+++++++   .|+++... ++.+.+|.+.+|+++.+|.||+|+|...
T Consensus       167 L~~~a~~~Gv~i~~~t~~~~V~~i~~~-~~~v~gV~t~~G~~i~Ad~VV~AtG~~s  221 (438)
T 3dje_A          167 AAREAQRMGVKFVTGTPQGRVVTLIFE-NNDVKGAVTADGKIWRAERTFLCAGASA  221 (438)
T ss_dssp             HHHHHHHTTCEEEESTTTTCEEEEEEE-TTEEEEEEETTTEEEECSEEEECCGGGG
T ss_pred             HHHHHHhcCCEEEeCCcCceEEEEEec-CCeEEEEEECCCCEEECCEEEECCCCCh
Confidence            4456778899999999   99999864 5677779999998899999999999764

>3dfz_A SIRC, precorrin-2 dehydrogenase; NAD dehydrogenase, cobalamin biosynthesis, NAD, oxidoreducta porphyrin biosynthesis; 2.30A {Bacillus megaterium}

Probab=93.83  E-value=0.072  Score=47.32  Aligned_cols=99  Identities=15%  Similarity=0.219  Sum_probs=61.8

Q ss_pred             cCCeEEEEcCChHHHHHHHHHHhCCCeEe--------eeHHHHHHcCcEEEcCCeEEEEEeCCCCcEEEEEcCCCCEEeC
Q 012165          206 KAKKVVVVGGGYIGMEVAAAAVGWKLDTT--------RYEQLYQQNGVKFVKGASIKNLEAGSDGRVAAVKLEDGSTIDA  277 (469)
Q Consensus       206 ~~~~vvVvG~G~~g~e~A~~l~~~g~~v~--------~~~~~l~~~gV~~~~~~~v~~i~~~~~~~v~~v~~~~g~~i~~  277 (469)
                      .+++++|||||.+|...+..|.+.|.+++        .+.++.++.+++++...    +             ..+.--.+
T Consensus        30 ~gk~VLVVGgG~va~~ka~~Ll~~GA~VtVvap~~~~~l~~l~~~~~i~~i~~~----~-------------~~~dL~~a   92 (223)
T 3dfz_A           30 KGRSVLVVGGGTIATRRIKGFLQEGAAITVVAPTVSAEINEWEAKGQLRVKRKK----V-------------GEEDLLNV   92 (223)
T ss_dssp             TTCCEEEECCSHHHHHHHHHHGGGCCCEEEECSSCCHHHHHHHHTTSCEEECSC----C-------------CGGGSSSC
T ss_pred             CCCEEEEECCCHHHHHHHHHHHHCCCEEEEECCCCCHHHHHHHHcCCcEEEECC----C-------------CHhHhCCC
Confidence            57999999999999999999999999988        23444445556665331    0             11111248


Q ss_pred             CEEEEccCCccCCchhhhcCCcccCCCEEeC---C-CCCC-CCCceEEecccc
Q 012165          278 DTIVIGIGAKPTVSPFERVGLNSSVGGIQVD---G-QFRT-RMPGIFAIGDVA  325 (469)
Q Consensus       278 D~vi~a~G~~p~~~~~~~~gl~~~~g~i~Vd---~-~~~t-~~~~Vfa~GD~a  325 (469)
                      |+||.|||.......+...   .. .++.||   . .+.+ ..|-++--||+.
T Consensus        93 dLVIaAT~d~~~N~~I~~~---ak-~gi~VNvvD~p~~~~f~~Paiv~rg~l~  141 (223)
T 3dfz_A           93 FFIVVATNDQAVNKFVKQH---IK-NDQLVNMASSFSDGNIQIPAQFSRGRLS  141 (223)
T ss_dssp             SEEEECCCCTHHHHHHHHH---SC-TTCEEEC-----CCSEECCEEEEETTEE
T ss_pred             CEEEECCCCHHHHHHHHHH---Hh-CCCEEEEeCCcccCeEEEeeEEEeCCEE
Confidence            9999999876543333222   11 244443   2 2222 567777777765

>1vg0_A RAB proteins geranylgeranyltransferase component A 1; RAB prenylation, post-translational modification, protein binding/protein transport complex; HET: GER GDP PG4; 2.20A {Rattus norvegicus} SCOP: c.3.1.3 d.16.1.6 PDB: 1vg9_A* 1ltx_R*

Probab=93.79  E-value=0.072  Score=55.07  Aligned_cols=55  Identities=15%  Similarity=0.109  Sum_probs=45.8

Q ss_pred             eeHHHHHHcCcEEEcCCeEEEEEeCCC-CcEEEEEcCCCCEEeCCEEEEccCCccC
Q 012165          235 RYEQLYQQNGVKFVKGASIKNLEAGSD-GRVAAVKLEDGSTIDADTIVIGIGAKPT  289 (469)
Q Consensus       235 ~~~~~l~~~gV~~~~~~~v~~i~~~~~-~~v~~v~~~~g~~i~~D~vi~a~G~~p~  289 (469)
                      .+.+.++..|.++++++.|++|..+++ +++.+|.+.+|+++.||.||......|.
T Consensus       383 aL~r~~~~~Gg~i~l~~~V~~I~~~~~~g~v~gV~~~~Ge~i~A~~VVs~~~~lp~  438 (650)
T 1vg0_A          383 CFCRMCAVFGGIYCLRHSVQCLVVDKESRKCKAVIDQFGQRIISKHFIIEDSYLSE  438 (650)
T ss_dssp             HHHHHHHHTTCEEESSCCEEEEEEETTTCCEEEEEETTSCEEECSEEEEEGGGBCT
T ss_pred             HHHHHHHHcCCEEEeCCEeeEEEEeCCCCeEEEEEeCCCCEEEcCEEEEChhhcCH
Confidence            556778899999999999999976543 7788888888999999999997776664

>3gyx_A Adenylylsulfate reductase; oxidoreductase; HET: FAD; 3.20A {Desulfovibrio gigas}

Probab=93.73  E-value=0.14  Score=53.53  Aligned_cols=43  Identities=16%  Similarity=0.253  Sum_probs=32.7

Q ss_pred             CcEEEcCCeEEEEEeCCC--CcEEEEEc---CCCC--EEeCCEEEEccCC
Q 012165          244 GVKFVKGASIKNLEAGSD--GRVAAVKL---EDGS--TIDADTIVIGIGA  286 (469)
Q Consensus       244 gV~~~~~~~v~~i~~~~~--~~v~~v~~---~~g~--~i~~D~vi~a~G~  286 (469)
                      ||+++.++.+.++..+++  +++.+|..   .+|+  .+.++.||+|+|-
T Consensus       182 gV~i~~~~~v~dLi~~~~~~g~v~Gv~~~~~~~g~~~~i~Ak~VVLATGG  231 (662)
T 3gyx_A          182 QDRIIERIFIVKLLLDKNTPNRIAGAVGFNLRANEVHIFKANAMVVACGG  231 (662)
T ss_dssp             TTTEECSEEECCCEECSSSTTBEEEEEEEESSSSCEEEEECSEEEECCCC
T ss_pred             CcEEEEceEEEEEEEeCCccceEEEEEEEEcCCCcEEEEEeCEEEECCCc
Confidence            899999888888775533  37777754   4554  5899999999994

>3ic5_A Putative saccharopine dehydrogenase; structural genomics, APC63807.2, N-terminal domain, saccharo dehydrogenase, PSI-2; HET: MSE; 2.08A {Ruegeria pomeroyi}

Probab=93.64  E-value=0.062  Score=41.97  Aligned_cols=33  Identities=12%  Similarity=0.286  Sum_probs=28.9

Q ss_pred             CCcEEEEcCcHHHHHHHHHHHHcC-CCCCcEEEEcCC
Q 012165           51 NREFVIVGGGNAAGYAARTFVEHG-MADGRLCIVSKE   86 (469)
Q Consensus        51 ~~~vvIIGgG~AGl~aA~~L~~~g-~~~~~V~vie~~   86 (469)
                      +.+|+|+|+|..|..++..|.+.| +   +|+++++.
T Consensus         5 ~~~v~I~G~G~iG~~~~~~l~~~g~~---~v~~~~r~   38 (118)
T 3ic5_A            5 RWNICVVGAGKIGQMIAALLKTSSNY---SVTVADHD   38 (118)
T ss_dssp             CEEEEEECCSHHHHHHHHHHHHCSSE---EEEEEESC
T ss_pred             cCeEEEECCCHHHHHHHHHHHhCCCc---eEEEEeCC
Confidence            468999999999999999999998 5   78888764

>3dfz_A SIRC, precorrin-2 dehydrogenase; NAD dehydrogenase, cobalamin biosynthesis, NAD, oxidoreducta porphyrin biosynthesis; 2.30A {Bacillus megaterium}

Probab=93.22  E-value=0.087  Score=46.77  Aligned_cols=37  Identities=24%  Similarity=0.508  Sum_probs=32.4

Q ss_pred             CCCCCcEEEEcCcHHHHHHHHHHHHcCCCCCcEEEEcCCC
Q 012165           48 ANENREFVIVGGGNAAGYAARTFVEHGMADGRLCIVSKEA   87 (469)
Q Consensus        48 ~~~~~~vvIIGgG~AGl~aA~~L~~~g~~~~~V~vie~~~   87 (469)
                      ....++|+|||||..|...+..|.+.|.   +|+|++++.
T Consensus        28 ~L~gk~VLVVGgG~va~~ka~~Ll~~GA---~VtVvap~~   64 (223)
T 3dfz_A           28 DLKGRSVLVVGGGTIATRRIKGFLQEGA---AITVVAPTV   64 (223)
T ss_dssp             CCTTCCEEEECCSHHHHHHHHHHGGGCC---CEEEECSSC
T ss_pred             EcCCCEEEEECCCHHHHHHHHHHHHCCC---EEEEECCCC
Confidence            3566899999999999999999999986   799999753

>1lss_A TRK system potassium uptake protein TRKA homolog; KTN domain, NAD, RCK domain, potassium transport, potassium channel, KTRA; HET: NAD; 2.30A {Methanocaldococcus jannaschii} SCOP: c.2.1.9

Probab=92.86  E-value=0.11  Score=41.88  Aligned_cols=32  Identities=19%  Similarity=0.344  Sum_probs=28.6

Q ss_pred             CcEEEEcCcHHHHHHHHHHHHcCCCCCcEEEEcCC
Q 012165           52 REFVIVGGGNAAGYAARTFVEHGMADGRLCIVSKE   86 (469)
Q Consensus        52 ~~vvIIGgG~AGl~aA~~L~~~g~~~~~V~vie~~   86 (469)
                      .+|+|||+|.-|...|..|.+.|+   +|++++++
T Consensus         5 m~i~IiG~G~iG~~~a~~L~~~g~---~v~~~d~~   36 (140)
T 1lss_A            5 MYIIIAGIGRVGYTLAKSLSEKGH---DIVLIDID   36 (140)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHTTC---EEEEEESC
T ss_pred             CEEEEECCCHHHHHHHHHHHhCCC---eEEEEECC
Confidence            479999999999999999999886   79998864

>2hmt_A YUAA protein; RCK, KTN, KTR, KTRA, ktrab, membrane protein, ION transporter, symporter, transport protein; HET: NAI; 2.20A {Bacillus subtilis} SCOP: c.2.1.9 PDB: 2hms_A* 2hmu_A* 2hmv_A* 2hmw_A* 1lsu_A*

Probab=92.59  E-value=0.12  Score=41.97  Aligned_cols=33  Identities=21%  Similarity=0.429  Sum_probs=29.3

Q ss_pred             CCcEEEEcCcHHHHHHHHHHHHcCCCCCcEEEEcCC
Q 012165           51 NREFVIVGGGNAAGYAARTFVEHGMADGRLCIVSKE   86 (469)
Q Consensus        51 ~~~vvIIGgG~AGl~aA~~L~~~g~~~~~V~vie~~   86 (469)
                      +++|+|+|+|.-|...+..|.+.|+   +|++++..
T Consensus         6 ~~~v~I~G~G~iG~~~a~~l~~~g~---~v~~~d~~   38 (144)
T 2hmt_A            6 NKQFAVIGLGRFGGSIVKELHRMGH---EVLAVDIN   38 (144)
T ss_dssp             CCSEEEECCSHHHHHHHHHHHHTTC---CCEEEESC
T ss_pred             CCcEEEECCCHHHHHHHHHHHHCCC---EEEEEeCC
Confidence            4679999999999999999999986   68888865

>4ffl_A PYLC; amino acid, biosynthesis of pyrrolysine, isopeptide bond for ATP-grAsp fold, ligase, ATP-binding, L-lysine and 3R-methyl ornithine; HET: LYS ADP ATP; 1.50A {Methanosarcina barkeri} PDB: 4ffm_A* 4ffn_A* 4ffo_A* 4ffp_A* 4ffr_A*

Probab=92.13  E-value=0.15  Score=48.88  Aligned_cols=37  Identities=27%  Similarity=0.286  Sum_probs=32.9

Q ss_pred             CCcEEEEcCcHHHHHHHHHHHHcCCCCCcEEEEcCCCCCC
Q 012165           51 NREFVIVGGGNAAGYAARTFVEHGMADGRLCIVSKEAYAP   90 (469)
Q Consensus        51 ~~~vvIIGgG~AGl~aA~~L~~~g~~~~~V~vie~~~~~~   90 (469)
                      |++|+|||||..|..++..+++.|+   ++.++|.++..+
T Consensus         1 MK~I~ilGgg~~g~~~~~~Ak~~G~---~vv~vd~~~~~~   37 (363)
T 4ffl_A            1 MKTICLVGGKLQGFEAAYLSKKAGM---KVVLVDKNPQAL   37 (363)
T ss_dssp             CCEEEEECCSHHHHHHHHHHHHTTC---EEEEEESCTTCT
T ss_pred             CCEEEEECCCHHHHHHHHHHHHCCC---EEEEEeCCCCCh
Confidence            5799999999999999999999998   799999876543

>3i83_A 2-dehydropantoate 2-reductase; structural genomics, oxidoreductase, NADP, pantothenate BIOS PSI-2, protein structure initiative; 1.90A {Methylococcus capsulatus}

Probab=92.02  E-value=0.44  Score=44.83  Aligned_cols=81  Identities=14%  Similarity=0.121  Sum_probs=52.8

Q ss_pred             CeEEEEcCChHHHHHHHHHHhCCCeEeee----HHHHHHcCcEEEc--CCeEEEEEeCCCCcEEEEEcCCC-CEE-eCCE
Q 012165          208 KKVVVVGGGYIGMEVAAAAVGWKLDTTRY----EQLYQQNGVKFVK--GASIKNLEAGSDGRVAAVKLEDG-STI-DADT  279 (469)
Q Consensus       208 ~~vvVvG~G~~g~e~A~~l~~~g~~v~~~----~~~l~~~gV~~~~--~~~v~~i~~~~~~~v~~v~~~~g-~~i-~~D~  279 (469)
                      .+|.|||+|.+|.-+|..|++.|.+|+.+    .+.+++.|+.+..  .... .+.+     + .+. .+- +.. .+|+
T Consensus         3 mkI~IiGaGaiG~~~a~~L~~~g~~V~~~~r~~~~~i~~~Gl~~~~~~~g~~-~~~~-----~-~~~-~~~~~~~~~~Dl   74 (320)
T 3i83_A            3 LNILVIGTGAIGSFYGALLAKTGHCVSVVSRSDYETVKAKGIRIRSATLGDY-TFRP-----A-AVV-RSAAELETKPDC   74 (320)
T ss_dssp             CEEEEESCCHHHHHHHHHHHHTTCEEEEECSTTHHHHHHHCEEEEETTTCCE-EECC-----S-CEE-SCGGGCSSCCSE
T ss_pred             CEEEEECcCHHHHHHHHHHHhCCCeEEEEeCChHHHHHhCCcEEeecCCCcE-EEee-----e-eeE-CCHHHcCCCCCE
Confidence            47999999999999999999999998821    3667778876653  1111 1100     0 111 222 222 6999


Q ss_pred             EEEccCCccCCchhhhc
Q 012165          280 IVIGIGAKPTVSPFERV  296 (469)
Q Consensus       280 vi~a~G~~p~~~~~~~~  296 (469)
                      ||+++......+.++.+
T Consensus        75 VilavK~~~~~~~l~~l   91 (320)
T 3i83_A           75 TLLCIKVVEGADRVGLL   91 (320)
T ss_dssp             EEECCCCCTTCCHHHHH
T ss_pred             EEEecCCCChHHHHHHH
Confidence            99998877665555543

>3c85_A Putative glutathione-regulated potassium-efflux S protein KEFB; TRKA domain; HET: AMP; 1.90A {Vibrio parahaemolyticus rimd 2210633}

Probab=91.94  E-value=0.16  Score=43.35  Aligned_cols=36  Identities=14%  Similarity=0.091  Sum_probs=31.0

Q ss_pred             CCCCcEEEEcCcHHHHHHHHHHHHc-CCCCCcEEEEcCCC
Q 012165           49 NENREFVIVGGGNAAGYAARTFVEH-GMADGRLCIVSKEA   87 (469)
Q Consensus        49 ~~~~~vvIIGgG~AGl~aA~~L~~~-g~~~~~V~vie~~~   87 (469)
                      ....+|+|+|.|.-|...|..|.+. |+   +|+++|.++
T Consensus        37 ~~~~~v~IiG~G~~G~~~a~~L~~~~g~---~V~vid~~~   73 (183)
T 3c85_A           37 PGHAQVLILGMGRIGTGAYDELRARYGK---ISLGIEIRE   73 (183)
T ss_dssp             CTTCSEEEECCSHHHHHHHHHHHHHHCS---CEEEEESCH
T ss_pred             CCCCcEEEECCCHHHHHHHHHHHhccCC---eEEEEECCH
Confidence            3356899999999999999999998 87   699998653

>3kkj_A Amine oxidase, flavin-containing; oxidoreductase, PSR10, Q888A4, X-RAY, structure, PSI, protein structure initiative; HET: FAD; 2.50A {Pseudomonas syringae PV}

Probab=91.86  E-value=0.12  Score=46.63  Aligned_cols=29  Identities=17%  Similarity=0.376  Sum_probs=26.2

Q ss_pred             eEEEEcCChHHHHHHHHHHhCCCeEeeeH
Q 012165          209 KVVVVGGGYIGMEVAAAAVGWKLDTTRYE  237 (469)
Q Consensus       209 ~vvVvG~G~~g~e~A~~l~~~g~~v~~~~  237 (469)
                      .|+|||+|++|+.+|..|++.|.+|+.++
T Consensus         4 dV~IIGaGpaGL~aA~~La~~G~~V~v~E   32 (336)
T 3kkj_A            4 PIAIIGTGIAGLSAAQALTAAGHQVHLFD   32 (336)
T ss_dssp             CEEEECCSHHHHHHHHHHHHTTCCEEEEC
T ss_pred             CEEEECcCHHHHHHHHHHHHCCCCEEEEE
Confidence            59999999999999999999999998443

>2x5o_A UDP-N-acetylmuramoylalanine--D-glutamate ligase; ATP-binding, cell cycle, cell division, cell shape, cell WAL biogenesis/degradation; HET: KCX VSV; 1.46A {Escherichia coli} PDB: 2wjp_A* 2xpc_A* 2y1o_A* 2jff_A* 2jfh_A* 2uuo_A* 2uup_A* 2vtd_A* 2vte_A* 2jfg_A* 2y66_A* 2y67_A* 2y68_A* 4uag_A* 1e0d_A* 1uag_A* 1eeh_A* 3uag_A* 2uag_A*

Probab=91.83  E-value=0.13  Score=51.02  Aligned_cols=35  Identities=17%  Similarity=0.281  Sum_probs=30.8

Q ss_pred             CCcEEEEcCcHHHHHHHHHHHHcCCCCCcEEEEcCCCC
Q 012165           51 NREFVIVGGGNAAGYAARTFVEHGMADGRLCIVSKEAY   88 (469)
Q Consensus        51 ~~~vvIIGgG~AGl~aA~~L~~~g~~~~~V~vie~~~~   88 (469)
                      .++|+|||.|.+|+++|+.|.++|+   +|++.|....
T Consensus         5 ~~~v~viG~G~~G~~~a~~l~~~G~---~v~~~D~~~~   39 (439)
T 2x5o_A            5 GKNVVIIGLGLTGLSCVDFFLARGV---TPRVMDTRMT   39 (439)
T ss_dssp             TCCEEEECCHHHHHHHHHHHHTTTC---CCEEEESSSS
T ss_pred             CCEEEEEeecHHHHHHHHHHHhCCC---EEEEEECCCC
Confidence            4689999999999999999999998   7999887653

>4hv4_A UDP-N-acetylmuramate--L-alanine ligase; MURC, yersinia pestis peptidoglycan synthesis; HET: AMP; 2.25A {Yersinia pestis} PDB: 2f00_A

Probab=91.82  E-value=0.096  Score=52.75  Aligned_cols=70  Identities=16%  Similarity=0.215  Sum_probs=53.4

Q ss_pred             hcCCeEEEEcCChHHHH-HHHHHHhCCCeEe-------eeHHHHHHcCcEEEcCCeEEEEEeCCCCcEEEEEcCCCCEEe
Q 012165          205 EKAKKVVVVGGGYIGME-VAAAAVGWKLDTT-------RYEQLYQQNGVKFVKGASIKNLEAGSDGRVAAVKLEDGSTID  276 (469)
Q Consensus       205 ~~~~~vvVvG~G~~g~e-~A~~l~~~g~~v~-------~~~~~l~~~gV~~~~~~~v~~i~~~~~~~v~~v~~~~g~~i~  276 (469)
                      ...+++.|||-|-+|+. +|..|.++|.+|+       ...+.|++.|++++.+...       + .     +     ..
T Consensus        20 ~~~~~v~viGiG~sG~s~~A~~l~~~G~~V~~~D~~~~~~~~~l~~~gi~~~~g~~~-------~-~-----~-----~~   81 (494)
T 4hv4_A           20 RRVRHIHFVGIGGAGMGGIAEVLANEGYQISGSDLAPNSVTQHLTALGAQIYFHHRP-------E-N-----V-----LD   81 (494)
T ss_dssp             --CCEEEEETTTSTTHHHHHHHHHHTTCEEEEECSSCCHHHHHHHHTTCEEESSCCG-------G-G-----G-----TT
T ss_pred             ccCCEEEEEEEcHhhHHHHHHHHHhCCCeEEEEECCCCHHHHHHHHCCCEEECCCCH-------H-H-----c-----CC
Confidence            34689999999999996 8999999999998       3346688899998876311       0 0     1     13


Q ss_pred             CCEEEEccCCccCCch
Q 012165          277 ADTIVIGIGAKPTVSP  292 (469)
Q Consensus       277 ~D~vi~a~G~~p~~~~  292 (469)
                      +|+||+++|..++.+.
T Consensus        82 ~d~vV~Spgi~~~~p~   97 (494)
T 4hv4_A           82 ASVVVVSTAISADNPE   97 (494)
T ss_dssp             CSEEEECTTSCTTCHH
T ss_pred             CCEEEECCCCCCCCHH
Confidence            8999999999887654

>1kyq_A Met8P, siroheme biosynthesis protein Met8; homodimer, oxidoreductase, lyase; HET: NAD; 2.20A {Saccharomyces cerevisiae} SCOP: c.2.1.11 e.37.1.1

Probab=91.53  E-value=0.092  Score=48.17  Aligned_cols=36  Identities=19%  Similarity=0.443  Sum_probs=31.9

Q ss_pred             CCCCcEEEEcCcHHHHHHHHHHHHcCCCCCcEEEEcCCC
Q 012165           49 NENREFVIVGGGNAAGYAARTFVEHGMADGRLCIVSKEA   87 (469)
Q Consensus        49 ~~~~~vvIIGgG~AGl~aA~~L~~~g~~~~~V~vie~~~   87 (469)
                      ...++|+|||||-.|...+..|.+.|.   +|+||+++.
T Consensus        11 l~~k~VLVVGgG~va~rka~~Ll~~Ga---~VtViap~~   46 (274)
T 1kyq_A           11 LKDKRILLIGGGEVGLTRLYKLMPTGC---KLTLVSPDL   46 (274)
T ss_dssp             CTTCEEEEEEESHHHHHHHHHHGGGTC---EEEEEEEEE
T ss_pred             cCCCEEEEECCcHHHHHHHHHHHhCCC---EEEEEcCCC
Confidence            345789999999999999999999986   799999764

>3lk7_A UDP-N-acetylmuramoylalanine--D-glutamate ligase; agalacitae, PSI, MCSG, structural genomics, midwest center for structural genomics; HET: MSE; 1.50A {Streptococcus agalactiae}

Probab=91.27  E-value=0.18  Score=50.02  Aligned_cols=132  Identities=13%  Similarity=0.169  Sum_probs=75.4

Q ss_pred             CCCCcEEEEcCcHHHHHHHHHHHHcCCCCCcEEEEcCCCCCCCCCCCCcccccCCCCCCCCCCCCCccccCCCCCCCCHh
Q 012165           49 NENREFVIVGGGNAAGYAARTFVEHGMADGRLCIVSKEAYAPYERPALTKGYLFPLDKKPARLPGFHTCVGSGGERQTPE  128 (469)
Q Consensus        49 ~~~~~vvIIGgG~AGl~aA~~L~~~g~~~~~V~vie~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  128 (469)
                      ...++|+|||.|.+|+++|..|+++|+   +|++.|.....                   .              ....+
T Consensus         7 ~~~k~v~viG~G~sG~s~A~~l~~~G~---~V~~~D~~~~~-------------------~--------------~~~~~   50 (451)
T 3lk7_A            7 FENKKVLVLGLARSGEAAARLLAKLGA---IVTVNDGKPFD-------------------E--------------NPTAQ   50 (451)
T ss_dssp             TTTCEEEEECCTTTHHHHHHHHHHTTC---EEEEEESSCGG-------------------G--------------CHHHH
T ss_pred             cCCCEEEEEeeCHHHHHHHHHHHhCCC---EEEEEeCCccc-------------------C--------------ChHHH
Confidence            346899999999999999999999998   79998865420                   0              01234


Q ss_pred             HHHHCCcEEEeCCcEEEEeCCCcEEEeCCCeEEEeccEEeccCCCCCcCCCCCCCCcCcEEEecCHHHHHHHHHhhhcCC
Q 012165          129 WYKEKGIEMIYQDPVTSIDIEKQTLITNSGKLLKYGSLIVATGCTASRFPEKIGGYLPGVHYIRDVADADALISSLEKAK  208 (469)
Q Consensus       129 ~~~~~~i~~~~~~~v~~id~~~~~v~~~~g~~~~yd~lVlAtG~~~~~~~~~~g~~~~~v~~~~~~~~~~~~~~~~~~~~  208 (469)
                      .+++.|+++..+...     ...   + ++   .+|.||+++|..+. .|.+....-.|+..+..   .+-+. .+.+.+
T Consensus        51 ~L~~~gi~~~~g~~~-----~~~---~-~~---~~d~vv~spgi~~~-~p~~~~a~~~gi~v~~~---~e~~~-~~~~~~  113 (451)
T 3lk7_A           51 SLLEEGIKVVCGSHP-----LEL---L-DE---DFCYMIKNPGIPYN-NPMVKKALEKQIPVLTE---VELAY-LVSESQ  113 (451)
T ss_dssp             HHHHTTCEEEESCCC-----GGG---G-GS---CEEEEEECTTSCTT-SHHHHHHHHTTCCEECH---HHHHH-HHCCSE
T ss_pred             HHHhCCCEEEECCCh-----HHh---h-cC---CCCEEEECCcCCCC-ChhHHHHHHCCCcEEeH---HHHHH-HhcCCC
Confidence            567789998876431     100   0 00   27999999997654 23221111123333322   22222 223445


Q ss_pred             eEEEEcC-ChHH--HHHHHHHHhCCCeE
Q 012165          209 KVVVVGG-GYIG--MEVAAAAVGWKLDT  233 (469)
Q Consensus       209 ~vvVvG~-G~~g--~e~A~~l~~~g~~v  233 (469)
                      .|.|-|+ |-+-  --++..|...|.++
T Consensus       114 ~IaVTGTnGKTTTt~ml~~iL~~~g~~~  141 (451)
T 3lk7_A          114 LIGITGSNGKTTTTTMIAEVLNAGGQRG  141 (451)
T ss_dssp             EEEEECSSCHHHHHHHHHHHHHHTTCCE
T ss_pred             EEEEECCCCHHHHHHHHHHHHHhcCCCE
Confidence            5666663 4332  23444555566544

>1f0y_A HCDH, L-3-hydroxyacyl-COA dehydrogenase; abortive ternary complex, oxidoreductase; HET: CAA NAD; 1.80A {Homo sapiens} SCOP: a.100.1.3 c.2.1.6 PDB: 3rqs_A 1lsj_A* 1il0_A* 1lso_A* 1m76_A* 1m75_A* 1f14_A 1f12_A 1f17_A* 3had_A* 2hdh_A* 3hdh_A*

Probab=90.68  E-value=0.29  Score=45.62  Aligned_cols=38  Identities=16%  Similarity=0.236  Sum_probs=31.8

Q ss_pred             CCCCCCcEEEEcCcHHHHHHHHHHHHcCCCCCcEEEEcCCC
Q 012165           47 FANENREFVIVGGGNAAGYAARTFVEHGMADGRLCIVSKEA   87 (469)
Q Consensus        47 ~~~~~~~vvIIGgG~AGl~aA~~L~~~g~~~~~V~vie~~~   87 (469)
                      |.+.+++|.|||+|.-|...|..|++.|+   +|+++|.++
T Consensus        11 ~~~~~~~I~VIG~G~mG~~iA~~la~~G~---~V~~~d~~~   48 (302)
T 1f0y_A           11 KKIIVKHVTVIGGGLMGAGIAQVAAATGH---TVVLVDQTE   48 (302)
T ss_dssp             -CCCCCEEEEECCSHHHHHHHHHHHHTTC---EEEEECSCH
T ss_pred             ccccCCEEEEECCCHHHHHHHHHHHhCCC---eEEEEECCH
Confidence            33445789999999999999999999987   799998654

>3hn7_A UDP-N-acetylmuramate-L-alanine ligase; ATP-binding, nucleotide-binding, structural genomics, joint for structural genomics, JCSG; HET: MSE; 1.65A {Psychrobacter arcticus 273-4}

Probab=90.34  E-value=0.22  Score=50.51  Aligned_cols=72  Identities=21%  Similarity=0.179  Sum_probs=53.2

Q ss_pred             hcCCeEEEEcCChHHHH-HHHHHHhCCCeEe--------eeHHHHHHcCcEEEcCCeEEEEEeCCCCcEEEEEcCCCCEE
Q 012165          205 EKAKKVVVVGGGYIGME-VAAAAVGWKLDTT--------RYEQLYQQNGVKFVKGASIKNLEAGSDGRVAAVKLEDGSTI  275 (469)
Q Consensus       205 ~~~~~vvVvG~G~~g~e-~A~~l~~~g~~v~--------~~~~~l~~~gV~~~~~~~v~~i~~~~~~~v~~v~~~~g~~i  275 (469)
                      ...+++.+||-|-+|+- +|..|.++|.+|+        ...+.|++.||+++.+.....             +    .-
T Consensus        17 ~~~~~i~~iGiGg~Gms~lA~~l~~~G~~V~~sD~~~~~~~~~~L~~~gi~~~~G~~~~~-------------~----~~   79 (524)
T 3hn7_A           17 FQGMHIHILGICGTFMGSLALLARALGHTVTGSDANIYPPMSTQLEQAGVTIEEGYLIAH-------------L----QP   79 (524)
T ss_dssp             --CCEEEEETTTSHHHHHHHHHHHHTTCEEEEEESCCCTTHHHHHHHTTCEEEESCCGGG-------------G----CS
T ss_pred             ecCCEEEEEEecHhhHHHHHHHHHhCCCEEEEECCCCCcHHHHHHHHCCCEEECCCCHHH-------------c----CC
Confidence            46799999999999997 6888999999998        234678889999876632110             0    02


Q ss_pred             eCCEEEEccCCccCCchh
Q 012165          276 DADTIVIGIGAKPTVSPF  293 (469)
Q Consensus       276 ~~D~vi~a~G~~p~~~~~  293 (469)
                      .+|+||.++|..++.+.+
T Consensus        80 ~~d~vV~Spgi~~~~p~l   97 (524)
T 3hn7_A           80 APDLVVVGNAMKRGMDVI   97 (524)
T ss_dssp             CCSEEEECTTCCTTSHHH
T ss_pred             CCCEEEECCCcCCCCHHH
Confidence            489999999998876653

>1jw9_B Molybdopterin biosynthesis MOEB protein; MOEB: modified rossmann fold, (2) Cys-X-X-Cys zinc-binding M MOAD: ubiquitin-like fold; 1.70A {Escherichia coli} SCOP: c.111.1.1 PDB: 1jwa_B* 1jwb_B*

Probab=89.73  E-value=0.33  Score=43.92  Aligned_cols=36  Identities=19%  Similarity=0.345  Sum_probs=31.9

Q ss_pred             CCcEEEEcCcHHHHHHHHHHHHcCCCCCcEEEEcCCCC
Q 012165           51 NREFVIVGGGNAAGYAARTFVEHGMADGRLCIVSKEAY   88 (469)
Q Consensus        51 ~~~vvIIGgG~AGl~aA~~L~~~g~~~~~V~vie~~~~   88 (469)
                      ..+|+|||+|-.|..+|..|.+.|..  +|+|+|.+..
T Consensus        31 ~~~VlVvG~Gg~G~~va~~La~~Gv~--~i~lvD~d~v   66 (249)
T 1jw9_B           31 DSRVLIVGLGGLGCAASQYLASAGVG--NLTLLDFDTV   66 (249)
T ss_dssp             HCEEEEECCSHHHHHHHHHHHHHTCS--EEEEECCCBC
T ss_pred             CCeEEEEeeCHHHHHHHHHHHHcCCC--eEEEEcCCCc
Confidence            46899999999999999999999863  8999998753

>1vl6_A Malate oxidoreductase; TM0542, NAD-dependent malic enzyme, structural genomics, JCS protein structure initiative, PSI; 2.61A {Thermotoga maritima} SCOP: c.2.1.7 c.58.1.3 PDB: 2hae_A*

Probab=89.58  E-value=0.33  Score=46.52  Aligned_cols=38  Identities=18%  Similarity=0.288  Sum_probs=33.0

Q ss_pred             CCCCCcEEEEcCcHHHHHHHHHHHHcCCCCCcEEEEcCCC
Q 012165           48 ANENREFVIVGGGNAAGYAARTFVEHGMADGRLCIVSKEA   87 (469)
Q Consensus        48 ~~~~~~vvIIGgG~AGl~aA~~L~~~g~~~~~V~vie~~~   87 (469)
                      .....+|||+|+|.+|..+|..|...|.+  +|+++|+..
T Consensus       189 ~l~~~kVVv~GAGaAG~~iAkll~~~G~~--~I~v~Dr~G  226 (388)
T 1vl6_A          189 KIEEVKVVVNGIGAAGYNIVKFLLDLGVK--NVVAVDRKG  226 (388)
T ss_dssp             CTTTCEEEEECCSHHHHHHHHHHHHHTCC--EEEEEETTE
T ss_pred             CCCCcEEEEECCCHHHHHHHHHHHhCCCC--eEEEEECCC
Confidence            34568999999999999999999999853  899999873

>3l4b_C TRKA K+ channel protien TM1088B; potassium channel, ring-gating complex, structural GEN PSI-2-2, protein structure initiative; HET: AMP; 3.45A {Thermotoga maritima}

Probab=89.57  E-value=0.26  Score=43.45  Aligned_cols=32  Identities=28%  Similarity=0.580  Sum_probs=28.9

Q ss_pred             cEEEEcCcHHHHHHHHHHHHcCCCCCcEEEEcCCC
Q 012165           53 EFVIVGGGNAAGYAARTFVEHGMADGRLCIVSKEA   87 (469)
Q Consensus        53 ~vvIIGgG~AGl~aA~~L~~~g~~~~~V~vie~~~   87 (469)
                      +|+|+|+|.-|...|..|.+.|+   +|+++|+++
T Consensus         2 ~iiIiG~G~~G~~la~~L~~~g~---~v~vid~~~   33 (218)
T 3l4b_C            2 KVIIIGGETTAYYLARSMLSRKY---GVVIINKDR   33 (218)
T ss_dssp             CEEEECCHHHHHHHHHHHHHTTC---CEEEEESCH
T ss_pred             EEEEECCCHHHHHHHHHHHhCCC---eEEEEECCH
Confidence            59999999999999999999987   799998653

>2a9f_A Putative malic enzyme ((S)-malate:NAD+ oxidoreductase (decarboxylating)); hypothetical protein, structural genomics, PSI; 2.50A {Streptococcus pyogenes}

Probab=89.55  E-value=0.33  Score=46.60  Aligned_cols=38  Identities=24%  Similarity=0.417  Sum_probs=32.8

Q ss_pred             CCCCCcEEEEcCcHHHHHHHHHHHHcCCCCCcEEEEcCCC
Q 012165           48 ANENREFVIVGGGNAAGYAARTFVEHGMADGRLCIVSKEA   87 (469)
Q Consensus        48 ~~~~~~vvIIGgG~AGl~aA~~L~~~g~~~~~V~vie~~~   87 (469)
                      .....+|||+|+|.||+.+|.-|...|.+  +|+++|+..
T Consensus       185 ~l~d~kVVi~GAGaAG~~iA~ll~~~Ga~--~I~v~D~~G  222 (398)
T 2a9f_A          185 SLDEVSIVVNGGGSAGLSITRKLLAAGAT--KVTVVDKFG  222 (398)
T ss_dssp             CTTSCEEEEECCSHHHHHHHHHHHHHTCC--EEEEEETTE
T ss_pred             CCCccEEEEECCCHHHHHHHHHHHHcCCC--eEEEEECCC
Confidence            34557999999999999999999999863  899999874

>4e12_A Diketoreductase; oxidoreductase, NADH; HET: 1PE; 1.93A {Acinetobacter baylyi} PDB: 4dyd_A* 4e13_A*

Probab=88.90  E-value=0.48  Score=43.68  Aligned_cols=35  Identities=14%  Similarity=0.148  Sum_probs=30.8

Q ss_pred             CCCcEEEEcCcHHHHHHHHHHHHcCCCCCcEEEEcCCC
Q 012165           50 ENREFVIVGGGNAAGYAARTFVEHGMADGRLCIVSKEA   87 (469)
Q Consensus        50 ~~~~vvIIGgG~AGl~aA~~L~~~g~~~~~V~vie~~~   87 (469)
                      ..++|.|||+|.-|...|..|++.|+   +|+++|.++
T Consensus         3 ~~~kV~VIGaG~mG~~iA~~la~~G~---~V~l~d~~~   37 (283)
T 4e12_A            3 GITNVTVLGTGVLGSQIAFQTAFHGF---AVTAYDINT   37 (283)
T ss_dssp             SCCEEEEECCSHHHHHHHHHHHHTTC---EEEEECSSH
T ss_pred             CCCEEEEECCCHHHHHHHHHHHhCCC---eEEEEeCCH
Confidence            35789999999999999999999998   799988654

>4dio_A NAD(P) transhydrogenase subunit alpha PART 1; structural genomics, PSI-biology, NEW YORK structural genomi research consortium, nysgrc; 2.60A {Sinorhizobium meliloti}

Probab=88.76  E-value=0.47  Score=45.98  Aligned_cols=35  Identities=17%  Similarity=0.155  Sum_probs=30.6

Q ss_pred             CCCcEEEEcCcHHHHHHHHHHHHcCCCCCcEEEEcCCC
Q 012165           50 ENREFVIVGGGNAAGYAARTFVEHGMADGRLCIVSKEA   87 (469)
Q Consensus        50 ~~~~vvIIGgG~AGl~aA~~L~~~g~~~~~V~vie~~~   87 (469)
                      ...+|+|||+|..|+.+|..++..|.   +|+++|..+
T Consensus       189 ~~~kV~ViG~G~iG~~aa~~a~~lGa---~V~v~D~~~  223 (405)
T 4dio_A          189 PAAKIFVMGAGVAGLQAIATARRLGA---VVSATDVRP  223 (405)
T ss_dssp             CCCEEEEECCSHHHHHHHHHHHHTTC---EEEEECSST
T ss_pred             CCCEEEEECCcHHHHHHHHHHHHCCC---EEEEEcCCH
Confidence            35789999999999999999999986   799988654

>2x5o_A UDP-N-acetylmuramoylalanine--D-glutamate ligase; ATP-binding, cell cycle, cell division, cell shape, cell WAL biogenesis/degradation; HET: KCX VSV; 1.46A {Escherichia coli} PDB: 2wjp_A* 2xpc_A* 2y1o_A* 2jff_A* 2jfh_A* 2uuo_A* 2uup_A* 2vtd_A* 2vte_A* 2jfg_A* 2y66_A* 2y67_A* 2y68_A* 4uag_A* 1e0d_A* 1uag_A* 1eeh_A* 3uag_A* 2uag_A*

Probab=88.72  E-value=0.094  Score=51.95  Aligned_cols=70  Identities=20%  Similarity=0.225  Sum_probs=48.7

Q ss_pred             cCCeEEEEcCChHHHHHHHHHHhCCCeEeee--------HHHHHHcCcEEEcCCeEEEEEeCCCCcEEEEEcCCCCEEeC
Q 012165          206 KAKKVVVVGGGYIGMEVAAAAVGWKLDTTRY--------EQLYQQNGVKFVKGASIKNLEAGSDGRVAAVKLEDGSTIDA  277 (469)
Q Consensus       206 ~~~~vvVvG~G~~g~e~A~~l~~~g~~v~~~--------~~~l~~~gV~~~~~~~v~~i~~~~~~~v~~v~~~~g~~i~~  277 (469)
                      .+++++|||.|.+|+..|..|.++|.+|+..        ...++ .|+++..+...   . .        .+    . .+
T Consensus         4 ~~~~v~viG~G~~G~~~a~~l~~~G~~v~~~D~~~~~~~~~~l~-~G~~~~~g~~~---~-~--------~~----~-~~   65 (439)
T 2x5o_A            4 QGKNVVIIGLGLTGLSCVDFFLARGVTPRVMDTRMTPPGLDKLP-EAVERHTGSLN---D-E--------WL----M-AA   65 (439)
T ss_dssp             TTCCEEEECCHHHHHHHHHHHHTTTCCCEEEESSSSCTTGGGSC-TTSCEEESSCC---H-H--------HH----H-TC
T ss_pred             CCCEEEEEeecHHHHHHHHHHHhCCCEEEEEECCCCcchhHHhh-CCCEEEECCCc---H-H--------Hh----c-cC
Confidence            4689999999999999999999999998711        12344 56666544311   0 0        00    1 47


Q ss_pred             CEEEEccCCccCCchh
Q 012165          278 DTIVIGIGAKPTVSPF  293 (469)
Q Consensus       278 D~vi~a~G~~p~~~~~  293 (469)
                      |.||+++|..|+.+.+
T Consensus        66 d~vV~s~gi~~~~p~~   81 (439)
T 2x5o_A           66 DLIVASPGIALAHPSL   81 (439)
T ss_dssp             SEEEECTTSCTTCHHH
T ss_pred             CEEEeCCCCCCCCHHH
Confidence            9999999988765543

>3hwr_A 2-dehydropantoate 2-reductase; YP_299159.1, PANE/APBA family ketopantoate reductase, struct genomics, joint center for structural genomics; HET: NDP BCN; 2.15A {Ralstonia eutropha}

Probab=88.68  E-value=0.81  Score=42.93  Aligned_cols=76  Identities=16%  Similarity=0.221  Sum_probs=47.2

Q ss_pred             hcCCeEEEEcCChHHHHHHHHHHhCCCeEee-----eHHHHHHcCcEEEcCCeEEEEEeCCCCcEEEEEcCCCC-EEeCC
Q 012165          205 EKAKKVVVVGGGYIGMEVAAAAVGWKLDTTR-----YEQLYQQNGVKFVKGASIKNLEAGSDGRVAAVKLEDGS-TIDAD  278 (469)
Q Consensus       205 ~~~~~vvVvG~G~~g~e~A~~l~~~g~~v~~-----~~~~l~~~gV~~~~~~~v~~i~~~~~~~v~~v~~~~g~-~i~~D  278 (469)
                      ....+|.|||+|..|.-+|..|++.|.+|+.     ..+.+++.|+.+.... .. ...    .+ ... .+-+ .-++|
T Consensus        17 ~~~~kI~IiGaGa~G~~~a~~L~~~G~~V~l~~~~~~~~~i~~~g~~~~~~~-~~-~~~----~~-~~~-~~~~~~~~~D   88 (318)
T 3hwr_A           17 FQGMKVAIMGAGAVGCYYGGMLARAGHEVILIARPQHVQAIEATGLRLETQS-FD-EQV----KV-SAS-SDPSAVQGAD   88 (318)
T ss_dssp             ---CEEEEESCSHHHHHHHHHHHHTTCEEEEECCHHHHHHHHHHCEEEECSS-CE-EEE----CC-EEE-SCGGGGTTCS
T ss_pred             ccCCcEEEECcCHHHHHHHHHHHHCCCeEEEEEcHhHHHHHHhCCeEEEcCC-Cc-EEE----ee-eee-CCHHHcCCCC
Confidence            3567999999999999999999999999882     2344566777765321 11 110    00 111 1211 12689


Q ss_pred             EEEEccCCcc
Q 012165          279 TIVIGIGAKP  288 (469)
Q Consensus       279 ~vi~a~G~~p  288 (469)
                      +||+++....
T Consensus        89 ~vilavk~~~   98 (318)
T 3hwr_A           89 LVLFCVKSTD   98 (318)
T ss_dssp             EEEECCCGGG
T ss_pred             EEEEEccccc
Confidence            9999987653

>3eag_A UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl-ME diaminopimelate ligase; UDP-N-acetylmuramate:L-alanyl-G glutamyl-MESO-diaminopimelate ligase; 2.55A {Neisseria meningitidis MC58}

Probab=88.51  E-value=0.47  Score=44.78  Aligned_cols=35  Identities=17%  Similarity=0.119  Sum_probs=29.9

Q ss_pred             CCCcEEEEcCcHHHHH-HHHHHHHcCCCCCcEEEEcCCC
Q 012165           50 ENREFVIVGGGNAAGY-AARTFVEHGMADGRLCIVSKEA   87 (469)
Q Consensus        50 ~~~~vvIIGgG~AGl~-aA~~L~~~g~~~~~V~vie~~~   87 (469)
                      .+++|.|||.|.+|++ +|..|.++|+   +|++.|...
T Consensus         3 ~~~~i~~iGiGg~Gms~~A~~L~~~G~---~V~~~D~~~   38 (326)
T 3eag_A            3 AMKHIHIIGIGGTFMGGLAAIAKEAGF---EVSGCDAKM   38 (326)
T ss_dssp             CCCEEEEESCCSHHHHHHHHHHHHTTC---EEEEEESSC
T ss_pred             CCcEEEEEEECHHHHHHHHHHHHhCCC---EEEEEcCCC
Confidence            3578999999999997 7888999998   799988654

>1y6j_A L-lactate dehydrogenase; southeast collaboratory for structural genomics, secsg, protein struc initiative, PSI, oxidoreductase; 3.01A {Clostridium thermocellum} SCOP: c.2.1.5 d.162.1.1

Probab=88.36  E-value=0.53  Score=44.24  Aligned_cols=37  Identities=19%  Similarity=0.232  Sum_probs=30.8

Q ss_pred             CCCcEEEEcCcHHHHHHHHHHHHcCCCCCcEEEEcCCC
Q 012165           50 ENREFVIVGGGNAAGYAARTFVEHGMADGRLCIVSKEA   87 (469)
Q Consensus        50 ~~~~vvIIGgG~AGl~aA~~L~~~g~~~~~V~vie~~~   87 (469)
                      ++.+|+|||+|..|.+.|..|...+. -.+|.++|-+.
T Consensus         6 ~~~KI~IiGaG~vG~~~a~~l~~~~~-~~ev~L~Di~~   42 (318)
T 1y6j_A            6 SRSKVAIIGAGFVGASAAFTMALRQT-ANELVLIDVFK   42 (318)
T ss_dssp             -CCCEEEECCSHHHHHHHHHHHHTTC-SSEEEEECCC-
T ss_pred             CCCEEEEECCCHHHHHHHHHHHhCCC-CCEEEEEeCCh
Confidence            34689999999999999999999876 55899998653

>3hn2_A 2-dehydropantoate 2-reductase; PSI-2, NYSGXRC, structural GE protein structure initiative; 2.50A {Geobacter metallireducens}

Probab=88.34  E-value=0.56  Score=43.92  Aligned_cols=81  Identities=17%  Similarity=0.110  Sum_probs=50.3

Q ss_pred             CeEEEEcCChHHHHHHHHHHhCCCeEeee----HHHHHHcCcEEEcCCeEEEEEeCCCCcEEEEEcCCCC-EEeCCEEEE
Q 012165          208 KKVVVVGGGYIGMEVAAAAVGWKLDTTRY----EQLYQQNGVKFVKGASIKNLEAGSDGRVAAVKLEDGS-TIDADTIVI  282 (469)
Q Consensus       208 ~~vvVvG~G~~g~e~A~~l~~~g~~v~~~----~~~l~~~gV~~~~~~~v~~i~~~~~~~v~~v~~~~g~-~i~~D~vi~  282 (469)
                      .+|.|||+|.+|.-+|..|++.|.+|+.+    .+.+++.|+.+.....-..+.+     + .+. .+-+ .-++|+||+
T Consensus         3 mkI~IiGaGaiG~~~a~~L~~~g~~V~~~~r~~~~~i~~~g~~~~~~~g~~~~~~-----~-~~~-~~~~~~~~~D~vil   75 (312)
T 3hn2_A            3 LRIAIVGAGALGLYYGALLQRSGEDVHFLLRRDYEAIAGNGLKVFSINGDFTLPH-----V-KGY-RAPEEIGPMDLVLV   75 (312)
T ss_dssp             -CEEEECCSTTHHHHHHHHHHTSCCEEEECSTTHHHHHHTCEEEEETTCCEEESC-----C-CEE-SCHHHHCCCSEEEE
T ss_pred             CEEEEECcCHHHHHHHHHHHHCCCeEEEEEcCcHHHHHhCCCEEEcCCCeEEEee-----c-eee-cCHHHcCCCCEEEE
Confidence            47999999999999999999999988821    3667788877653210001100     0 011 1111 126899999


Q ss_pred             ccCCccCCchhhh
Q 012165          283 GIGAKPTVSPFER  295 (469)
Q Consensus       283 a~G~~p~~~~~~~  295 (469)
                      ++......+.++.
T Consensus        76 avk~~~~~~~l~~   88 (312)
T 3hn2_A           76 GLKTFANSRYEEL   88 (312)
T ss_dssp             CCCGGGGGGHHHH
T ss_pred             ecCCCCcHHHHHH
Confidence            9876654444443

>3rui_A Ubiquitin-like modifier-activating enzyme ATG7; autophagosome formation, non-canonical E1, ATP BI UBL, ATG8, ATG12, ATG10, ATG3, UBL activation, thiolation; 1.91A {Saccharomyces cerevisiae} PDB: 3t7e_A 3vh3_A 3vh4_A*

Probab=88.33  E-value=0.53  Score=44.44  Aligned_cols=37  Identities=19%  Similarity=0.534  Sum_probs=33.0

Q ss_pred             CCCcEEEEcCcHHHHHHHHHHHHcCCCCCcEEEEcCCCC
Q 012165           50 ENREFVIVGGGNAAGYAARTFVEHGMADGRLCIVSKEAY   88 (469)
Q Consensus        50 ~~~~vvIIGgG~AGl~aA~~L~~~g~~~~~V~vie~~~~   88 (469)
                      ...+|+|||+|-.|..+|..|.+.|.  ++|+++|.+..
T Consensus        33 ~~~~VlIvGaGGlGs~va~~La~aGV--g~ItlvD~D~V   69 (340)
T 3rui_A           33 KNTKVLLLGAGTLGCYVSRALIAWGV--RKITFVDNGTV   69 (340)
T ss_dssp             HTCEEEEECCSHHHHHHHHHHHHTTC--CEEEEECCCBC
T ss_pred             hCCEEEEECCCHHHHHHHHHHHHcCC--CEEEEecCCEe
Confidence            45789999999999999999999997  49999998764

>3tl2_A Malate dehydrogenase; center for structural genomics of infectious diseases, csgid dehydrogenase, oxidoreductase, citric acid cycle; 1.70A {Bacillus anthracis}

Probab=88.26  E-value=0.58  Score=43.89  Aligned_cols=37  Identities=11%  Similarity=0.270  Sum_probs=31.5

Q ss_pred             CCCCCcEEEEcCcHHHHHHHHHHHHcCCCCCcEEEEcCC
Q 012165           48 ANENREFVIVGGGNAAGYAARTFVEHGMADGRLCIVSKE   86 (469)
Q Consensus        48 ~~~~~~vvIIGgG~AGl~aA~~L~~~g~~~~~V~vie~~   86 (469)
                      ++...+|.|||+|.-|.+.|..|+..++  .+|+++|..
T Consensus         5 ~~~~~kv~ViGaG~vG~~ia~~l~~~g~--~~v~l~D~~   41 (315)
T 3tl2_A            5 TIKRKKVSVIGAGFTGATTAFLLAQKEL--ADVVLVDIP   41 (315)
T ss_dssp             CCCCCEEEEECCSHHHHHHHHHHHHTTC--CEEEEECCG
T ss_pred             ccCCCEEEEECCCHHHHHHHHHHHhCCC--CeEEEEecc
Confidence            3455789999999999999999999876  489998865

>3p2y_A Alanine dehydrogenase/pyridine nucleotide transhy; seattle structural genomics center for infectious disease, S tuberculosis; 1.82A {Mycobacterium smegmatis str}

Probab=87.91  E-value=0.48  Score=45.51  Aligned_cols=35  Identities=17%  Similarity=0.070  Sum_probs=30.5

Q ss_pred             CCCcEEEEcCcHHHHHHHHHHHHcCCCCCcEEEEcCCC
Q 012165           50 ENREFVIVGGGNAAGYAARTFVEHGMADGRLCIVSKEA   87 (469)
Q Consensus        50 ~~~~vvIIGgG~AGl~aA~~L~~~g~~~~~V~vie~~~   87 (469)
                      ...+|+|||+|..|+.+|..++..|.   +|+++|..+
T Consensus       183 ~~~kV~ViG~G~iG~~aa~~a~~lGa---~V~v~D~~~  217 (381)
T 3p2y_A          183 KPASALVLGVGVAGLQALATAKRLGA---KTTGYDVRP  217 (381)
T ss_dssp             CCCEEEEESCSHHHHHHHHHHHHHTC---EEEEECSSG
T ss_pred             CCCEEEEECchHHHHHHHHHHHHCCC---EEEEEeCCH
Confidence            45799999999999999999999986   799988653

>3fwz_A Inner membrane protein YBAL; TRKA-N domain, E.coli, structural genomics, PSI-2, Pro structure initiative; HET: MSE AMP; 1.79A {Escherichia coli k-12}

Probab=87.87  E-value=0.83  Score=36.95  Aligned_cols=71  Identities=14%  Similarity=0.182  Sum_probs=46.5

Q ss_pred             CCeEEEEcCChHHHHHHHHHHhCCCeEe------eeHHHHHHcCcEEEcCCeEEEEEeCCCCcEEEEEcCCCCEEeCCEE
Q 012165          207 AKKVVVVGGGYIGMEVAAAAVGWKLDTT------RYEQLYQQNGVKFVKGASIKNLEAGSDGRVAAVKLEDGSTIDADTI  280 (469)
Q Consensus       207 ~~~vvVvG~G~~g~e~A~~l~~~g~~v~------~~~~~l~~~gV~~~~~~~v~~i~~~~~~~v~~v~~~~g~~i~~D~v  280 (469)
                      .++++|+|.|..|..+|..|.+.|.++.      ...+.+++.|+.++.+..      . +..    .+..-..-.+|.+
T Consensus         7 ~~~viIiG~G~~G~~la~~L~~~g~~v~vid~~~~~~~~~~~~g~~~i~gd~------~-~~~----~l~~a~i~~ad~v   75 (140)
T 3fwz_A            7 CNHALLVGYGRVGSLLGEKLLASDIPLVVIETSRTRVDELRERGVRAVLGNA------A-NEE----IMQLAHLECAKWL   75 (140)
T ss_dssp             CSCEEEECCSHHHHHHHHHHHHTTCCEEEEESCHHHHHHHHHTTCEEEESCT------T-SHH----HHHHTTGGGCSEE
T ss_pred             CCCEEEECcCHHHHHHHHHHHHCCCCEEEEECCHHHHHHHHHcCCCEEECCC------C-CHH----HHHhcCcccCCEE
Confidence            4689999999999999999999999987      222345567776654310      0 000    0111012368999


Q ss_pred             EEccCCcc
Q 012165          281 VIGIGAKP  288 (469)
Q Consensus       281 i~a~G~~p  288 (469)
                      |++++...
T Consensus        76 i~~~~~~~   83 (140)
T 3fwz_A           76 ILTIPNGY   83 (140)
T ss_dssp             EECCSCHH
T ss_pred             EEECCChH
Confidence            99988654

>3fpz_A Thiazole biosynthetic enzyme; FAD, mitochondrion, N thiamine biosynthesis, transit peptide, biosynthetic protei; HET: AHZ; 1.82A {Saccharomyces cerevisiae}

Probab=87.83  E-value=0.48  Score=44.54  Aligned_cols=46  Identities=17%  Similarity=0.263  Sum_probs=35.6

Q ss_pred             CCeEEEEcCChHHHHHHHHHHh--CCCeEe--------------------------eeHHHHHHcCcEEEcCCe
Q 012165          207 AKKVVVVGGGYIGMEVAAAAVG--WKLDTT--------------------------RYEQLYQQNGVKFVKGAS  252 (469)
Q Consensus       207 ~~~vvVvG~G~~g~e~A~~l~~--~g~~v~--------------------------~~~~~l~~~gV~~~~~~~  252 (469)
                      ...|+|||+|+.|+..|.+|++  .|.+|.                          .+.+.+++.|+++..+..
T Consensus        65 ~~DV~IIGaGPAGlsAA~~la~~r~G~~V~viEk~~~~GG~~~~~~~~~~~~~l~~~~~~~~~e~Gv~~~~~~~  138 (326)
T 3fpz_A           65 VSDVIIVGAGSSGLSAAYVIAKNRPDLKVCIIESSVAPGGGSWLGGQLFSAMVMRKPAHLFLQELEIPYEDEGD  138 (326)
T ss_dssp             EESEEEECCSHHHHHHHHHHHHHCTTSCEEEECSSSSCCTTTTCCSTTCCCEEEETTTHHHHHHTTCCCEECSS
T ss_pred             CCCEEEECCCHHHHHHHHHHHHhCCCCeEEEEECCCCCCceEEeCCccCCHHHHHHHHHHHHHHcCCEEEECCc
Confidence            4679999999999999999964  588887                          235566777887766543

>2vvm_A Monoamine oxidase N; FAD, peroxisome, flavoprotein, oxidoreductase, enantioselectivity, directed evolution variant; HET: FAD; 1.85A {Aspergillus niger} PDB: 2vvl_A* 2vvl_G*

Probab=87.63  E-value=0.72  Score=46.09  Aligned_cols=37  Identities=16%  Similarity=0.317  Sum_probs=33.7

Q ss_pred             CcEEEEcCcHHHHHHHHHHHHcCCCCCcEEEEcCCCCCCC
Q 012165           52 REFVIVGGGNAAGYAARTFVEHGMADGRLCIVSKEAYAPY   91 (469)
Q Consensus        52 ~~vvIIGgG~AGl~aA~~L~~~g~~~~~V~vie~~~~~~~   91 (469)
                      +||+|||||+|||+||..|++.|+   +|+|+|+.+..+.
T Consensus        40 ~~v~iiGaG~aGl~aA~~l~~~g~---~v~v~E~~~~~GG   76 (495)
T 2vvm_A           40 WDVIVIGGGYCGLTATRDLTVAGF---KTLLLEARDRIGG   76 (495)
T ss_dssp             EEEEEECCBHHHHHHHHHHHHTTC---CEEEECSSSBSBT
T ss_pred             CCEEEECCcHHHHHHHHHHHHCCC---CEEEEeCCCCCCC
Confidence            799999999999999999999987   7999999987643

>2bcg_G Secretory pathway GDP dissociation inhibitor; RABGTPase, geranylgeranylation, vesicular transport, protein transport; HET: GDP GER; 1.48A {Saccharomyces cerevisiae} SCOP: c.3.1.3 c.3.1.3 d.16.1.6 PDB: 1ukv_G* 3cpi_G 3cph_G 3cpj_G*

Probab=87.57  E-value=0.63  Score=46.12  Aligned_cols=40  Identities=10%  Similarity=0.184  Sum_probs=35.8

Q ss_pred             CCCCcEEEEcCcHHHHHHHHHHHHcCCCCCcEEEEcCCCCCCC
Q 012165           49 NENREFVIVGGGNAAGYAARTFVEHGMADGRLCIVSKEAYAPY   91 (469)
Q Consensus        49 ~~~~~vvIIGgG~AGl~aA~~L~~~g~~~~~V~vie~~~~~~~   91 (469)
                      +..+||+|||||++|++||..|++.|+   +|+|+|+++..+.
T Consensus         9 ~~~~dvvVIGaG~~GL~aA~~La~~G~---~V~vlE~~~~~GG   48 (453)
T 2bcg_G            9 DTDYDVIVLGTGITECILSGLLSVDGK---KVLHIDKQDHYGG   48 (453)
T ss_dssp             CCBCSEEEECCSHHHHHHHHHHHHTTC---CEEEECSSSSSCG
T ss_pred             cccCCEEEECcCHHHHHHHHHHHHCCC---eEEEEeCCCCCCc
Confidence            345899999999999999999999998   7999999987653

>1zud_1 Adenylyltransferase THIF; thiamin, thiazole, protein-protein complex, THIF, TRAN biosynthetic protein complex; 1.98A {Escherichia coli} PDB: 1zfn_A* 1zkm_A

Probab=87.53  E-value=0.54  Score=42.53  Aligned_cols=37  Identities=19%  Similarity=0.300  Sum_probs=32.5

Q ss_pred             CCCcEEEEcCcHHHHHHHHHHHHcCCCCCcEEEEcCCCC
Q 012165           50 ENREFVIVGGGNAAGYAARTFVEHGMADGRLCIVSKEAY   88 (469)
Q Consensus        50 ~~~~vvIIGgG~AGl~aA~~L~~~g~~~~~V~vie~~~~   88 (469)
                      ...+|+|||+|-.|..+|..|.+.|..  +++|+|.+..
T Consensus        27 ~~~~VlvvG~GglG~~va~~La~~Gvg--~i~lvD~d~v   63 (251)
T 1zud_1           27 LDSQVLIIGLGGLGTPAALYLAGAGVG--TLVLADDDDV   63 (251)
T ss_dssp             HTCEEEEECCSTTHHHHHHHHHHTTCS--EEEEECCCBC
T ss_pred             hcCcEEEEccCHHHHHHHHHHHHcCCC--eEEEEeCCCc
Confidence            346899999999999999999999974  8999998754

>3pqe_A L-LDH, L-lactate dehydrogenase; FBP, oxidoreductase; 2.20A {Bacillus subtilis} PDB: 3pqf_A* 3pqd_A*

Probab=87.46  E-value=0.67  Score=43.66  Aligned_cols=37  Identities=14%  Similarity=0.367  Sum_probs=31.1

Q ss_pred             CCCCcEEEEcCcHHHHHHHHHHHHcCCCCCcEEEEcCC
Q 012165           49 NENREFVIVGGGNAAGYAARTFVEHGMADGRLCIVSKE   86 (469)
Q Consensus        49 ~~~~~vvIIGgG~AGl~aA~~L~~~g~~~~~V~vie~~   86 (469)
                      ....+|.|||+|..|.+.|..|+..++ -.+++++|..
T Consensus         3 ~~~~kI~ViGaG~vG~~~a~~l~~~~~-~~~l~l~D~~   39 (326)
T 3pqe_A            3 KHVNKVALIGAGFVGSSYAFALINQGI-TDELVVIDVN   39 (326)
T ss_dssp             CSCCEEEEECCSHHHHHHHHHHHHHTC-CSEEEEECSC
T ss_pred             CCCCEEEEECCCHHHHHHHHHHHhCCC-CceEEEEecc
Confidence            345689999999999999999999886 4589998864

>3h8v_A Ubiquitin-like modifier-activating enzyme 5; rossman fold, ATP-binding, UBL conjugation pathway, transfer structural genomics consortium, SGC; HET: ATP; 2.00A {Homo sapiens} PDB: 3guc_A*

Probab=87.36  E-value=0.51  Score=43.64  Aligned_cols=37  Identities=22%  Similarity=0.387  Sum_probs=32.9

Q ss_pred             CCCcEEEEcCcHHHHHHHHHHHHcCCCCCcEEEEcCCCC
Q 012165           50 ENREFVIVGGGNAAGYAARTFVEHGMADGRLCIVSKEAY   88 (469)
Q Consensus        50 ~~~~vvIIGgG~AGl~aA~~L~~~g~~~~~V~vie~~~~   88 (469)
                      ...+|+|||+|-.|..+|..|++.|.  ++++|+|.+..
T Consensus        35 ~~~~VlVvGaGGlGs~va~~La~aGV--G~i~lvD~D~V   71 (292)
T 3h8v_A           35 RTFAVAIVGVGGVGSVTAEMLTRCGI--GKLLLFDYDKV   71 (292)
T ss_dssp             GGCEEEEECCSHHHHHHHHHHHHHTC--SEEEEECCCBC
T ss_pred             hCCeEEEECcCHHHHHHHHHHHHcCC--CEEEEECCCcc
Confidence            45799999999999999999999996  48999998764

>1pjq_A CYSG, siroheme synthase; rossman fold, nucleotide binding motif, SAM, NAD, phosphoserine, transferase/oxidoreductase/lyase complex; HET: SEP PGE SAH; 2.21A {Salmonella typhimurium} SCOP: c.2.1.11 c.90.1.1 e.37.1.1 PDB: 1pjs_A* 1pjt_A*

Probab=87.33  E-value=0.46  Score=47.19  Aligned_cols=35  Identities=37%  Similarity=0.609  Sum_probs=31.4

Q ss_pred             CCCcEEEEcCcHHHHHHHHHHHHcCCCCCcEEEEcCCC
Q 012165           50 ENREFVIVGGGNAAGYAARTFVEHGMADGRLCIVSKEA   87 (469)
Q Consensus        50 ~~~~vvIIGgG~AGl~aA~~L~~~g~~~~~V~vie~~~   87 (469)
                      ..++|+|||||..|...+..|.+.|.   +|+|++++.
T Consensus        11 ~~~~vlVvGgG~va~~k~~~L~~~ga---~V~vi~~~~   45 (457)
T 1pjq_A           11 RDRDCLIVGGGDVAERKARLLLEAGA---RLTVNALTF   45 (457)
T ss_dssp             BTCEEEEECCSHHHHHHHHHHHHTTB---EEEEEESSC
T ss_pred             CCCEEEEECCCHHHHHHHHHHHhCcC---EEEEEcCCC
Confidence            45789999999999999999999986   899999864

>3nrn_A Uncharacterized protein PF1083; alpha-beta protein, structural genomics, PSI-2, protein STRU initiative; HET: AMP; 2.10A {Pyrococcus furiosus}

Probab=87.23  E-value=0.92  Score=44.22  Aligned_cols=44  Identities=18%  Similarity=0.292  Sum_probs=36.5

Q ss_pred             HHHCCcEEEeCCcEEEEeCCCcEEEeCCCeEEEeccEEeccCCC
Q 012165          130 YKEKGIEMIYQDPVTSIDIEKQTLITNSGKLLKYGSLIVATGCT  173 (469)
Q Consensus       130 ~~~~~i~~~~~~~v~~id~~~~~v~~~~g~~~~yd~lVlAtG~~  173 (469)
                      +++.|++++++++|++|+.++..+.+.+|+++.+|+||+|+|..
T Consensus       199 ~~~~G~~i~~~~~V~~i~~~~~~vV~~~g~~~~ad~Vv~a~~~~  242 (421)
T 3nrn_A          199 IMENKGKILTRKEVVEINIEEKKVYTRDNEEYSFDVAISNVGVR  242 (421)
T ss_dssp             HHTTTCEEESSCCEEEEETTTTEEEETTCCEEECSEEEECSCHH
T ss_pred             HHHCCCEEEcCCeEEEEEEECCEEEEeCCcEEEeCEEEECCCHH
Confidence            45668999999999999987655555677889999999999964

>3i83_A 2-dehydropantoate 2-reductase; structural genomics, oxidoreductase, NADP, pantothenate BIOS PSI-2, protein structure initiative; 1.90A {Methylococcus capsulatus}

Probab=87.15  E-value=0.62  Score=43.78  Aligned_cols=32  Identities=16%  Similarity=0.425  Sum_probs=28.8

Q ss_pred             CcEEEEcCcHHHHHHHHHHHHcCCCCCcEEEEcCC
Q 012165           52 REFVIVGGGNAAGYAARTFVEHGMADGRLCIVSKE   86 (469)
Q Consensus        52 ~~vvIIGgG~AGl~aA~~L~~~g~~~~~V~vie~~   86 (469)
                      .+|.|||+|.-|.+.|..|.+.|+   +|++++++
T Consensus         3 mkI~IiGaGaiG~~~a~~L~~~g~---~V~~~~r~   34 (320)
T 3i83_A            3 LNILVIGTGAIGSFYGALLAKTGH---CVSVVSRS   34 (320)
T ss_dssp             CEEEEESCCHHHHHHHHHHHHTTC---EEEEECST
T ss_pred             CEEEEECcCHHHHHHHHHHHhCCC---eEEEEeCC
Confidence            489999999999999999999986   79998764

>3d0o_A L-LDH 1, L-lactate dehydrogenase 1; cytoplasm, glycolysis, NAD, oxidoreductase, phosphoprotein; 1.80A {Staphylococcus aureus} PDB: 3d4p_A* 3h3j_A*

Probab=86.96  E-value=0.72  Score=43.32  Aligned_cols=36  Identities=19%  Similarity=0.405  Sum_probs=30.3

Q ss_pred             CCCcEEEEcCcHHHHHHHHHHHHcCCCCCcEEEEcCC
Q 012165           50 ENREFVIVGGGNAAGYAARTFVEHGMADGRLCIVSKE   86 (469)
Q Consensus        50 ~~~~vvIIGgG~AGl~aA~~L~~~g~~~~~V~vie~~   86 (469)
                      ++.+|+|||+|..|.+.|..|...+. -.+|.++|.+
T Consensus         5 ~~~KI~IIGaG~vG~~la~~l~~~~~-~~ei~L~Di~   40 (317)
T 3d0o_A            5 KGNKVVLIGNGAVGSSYAFSLVNQSI-VDELVIIDLD   40 (317)
T ss_dssp             CCCEEEEECCSHHHHHHHHHHHHHCS-CSEEEEECSC
T ss_pred             CCCEEEEECCCHHHHHHHHHHHhCCC-CCEEEEEeCC
Confidence            44689999999999999999998875 4579998854

>1vg0_A RAB proteins geranylgeranyltransferase component A 1; RAB prenylation, post-translational modification, protein binding/protein transport complex; HET: GER GDP PG4; 2.20A {Rattus norvegicus} SCOP: c.3.1.3 d.16.1.6 PDB: 1vg9_A* 1ltx_R*

Probab=86.96  E-value=1.2  Score=45.98  Aligned_cols=39  Identities=18%  Similarity=0.321  Sum_probs=35.5

Q ss_pred             CCCCcEEEEcCcHHHHHHHHHHHHcCCCCCcEEEEcCCCCCC
Q 012165           49 NENREFVIVGGGNAAGYAARTFVEHGMADGRLCIVSKEAYAP   90 (469)
Q Consensus        49 ~~~~~vvIIGgG~AGl~aA~~L~~~g~~~~~V~vie~~~~~~   90 (469)
                      .+++||+|||+|..|...|..|++.|.   +|++||+.++.+
T Consensus         6 ~~~~D~~i~GtGl~~~~~a~~~~~~g~---~vl~id~~~~~g   44 (650)
T 1vg0_A            6 PSDFDVIVIGTGLPESIIAAACSRSGQ---RVLHVDSRSYYG   44 (650)
T ss_dssp             CSBCSEEEECCSHHHHHHHHHHHHTTC---CEEEECSSSSSC
T ss_pred             CCcCCEEEECCcHHHHHHHHHHHhCCC---EEEEEcCCCccc
Confidence            346999999999999999999999987   799999999875

>1pzg_A LDH, lactate dehydrogenase; apicomplexa, APAD, tetramer, rossmann fold, oxidoreductase; HET: CME A3D; 1.60A {Toxoplasma gondii} SCOP: c.2.1.5 d.162.1.1 PDB: 1pzf_A* 1pze_A* 1pzh_A* 3om9_A* 1sov_A 1sow_A* 3czm_A*

Probab=86.94  E-value=0.8  Score=43.26  Aligned_cols=36  Identities=11%  Similarity=0.225  Sum_probs=30.1

Q ss_pred             CCCcEEEEcCcHHHHHHHHHHHHcCCCCCcEEEEcCCC
Q 012165           50 ENREFVIVGGGNAAGYAARTFVEHGMADGRLCIVSKEA   87 (469)
Q Consensus        50 ~~~~vvIIGgG~AGl~aA~~L~~~g~~~~~V~vie~~~   87 (469)
                      ++.+|+|||+|.-|.+.|..|++.|+-  +|+++|.++
T Consensus         8 ~~~kI~VIGaG~vG~~lA~~la~~g~~--~V~L~D~~~   43 (331)
T 1pzg_A            8 RRKKVAMIGSGMIGGTMGYLCALRELA--DVVLYDVVK   43 (331)
T ss_dssp             CCCEEEEECCSHHHHHHHHHHHHHTCC--EEEEECSSS
T ss_pred             CCCEEEEECCCHHHHHHHHHHHhCCCC--eEEEEECCh
Confidence            345899999999999999999998862  599988653

>3gpi_A NAD-dependent epimerase/dehydratase; structural genomics, unknown function, PSI-2, protein structure initiative; 1.44A {Methylobacillus flagellatus KT}

Probab=86.66  E-value=0.77  Score=42.04  Aligned_cols=34  Identities=21%  Similarity=0.284  Sum_probs=30.0

Q ss_pred             CCcEEEEcCcHHHHHHHHHHHHcCCCCCcEEEEcCCC
Q 012165           51 NREFVIVGGGNAAGYAARTFVEHGMADGRLCIVSKEA   87 (469)
Q Consensus        51 ~~~vvIIGgG~AGl~aA~~L~~~g~~~~~V~vie~~~   87 (469)
                      +++|+|.|+|+-|...+..|.+.|+   +|+++++..
T Consensus         3 ~~~ilVtGaG~iG~~l~~~L~~~g~---~V~~~~r~~   36 (286)
T 3gpi_A            3 LSKILIAGCGDLGLELARRLTAQGH---EVTGLRRSA   36 (286)
T ss_dssp             CCCEEEECCSHHHHHHHHHHHHTTC---CEEEEECTT
T ss_pred             CCcEEEECCCHHHHHHHHHHHHCCC---EEEEEeCCc
Confidence            4589999999999999999999987   798887654

>3gvi_A Malate dehydrogenase; NAD, oxidoreductase, tricarboxylic acid cycle, structural genomics; HET: ADP; 2.25A {Brucella melitensis biovar ABORTUS2308} PDB: 3gvh_A*

Probab=86.51  E-value=0.82  Score=43.02  Aligned_cols=37  Identities=11%  Similarity=0.182  Sum_probs=31.0

Q ss_pred             CCCCcEEEEcCcHHHHHHHHHHHHcCCCCCcEEEEcCCC
Q 012165           49 NENREFVIVGGGNAAGYAARTFVEHGMADGRLCIVSKEA   87 (469)
Q Consensus        49 ~~~~~vvIIGgG~AGl~aA~~L~~~g~~~~~V~vie~~~   87 (469)
                      |++.+|.|||+|..|.+.|..|...++ . +|+++|..+
T Consensus         5 m~~~kI~viGaG~vG~~~a~~l~~~~~-~-~v~L~Di~~   41 (324)
T 3gvi_A            5 MARNKIALIGSGMIGGTLAHLAGLKEL-G-DVVLFDIAE   41 (324)
T ss_dssp             -CCCEEEEECCSHHHHHHHHHHHHTTC-C-EEEEECSSS
T ss_pred             CcCCEEEEECCCHHHHHHHHHHHhCCC-C-eEEEEeCCc
Confidence            445689999999999999999999887 3 899988654

>3ego_A Probable 2-dehydropantoate 2-reductase; structural genomics, PANE, unknown function, cytoplasm, NADP, oxidoreductase; 1.90A {Bacillus subtilis}

Probab=86.46  E-value=1.2  Score=41.55  Aligned_cols=66  Identities=23%  Similarity=0.340  Sum_probs=0.0

Q ss_pred             eEEEEcCChHHHHHHHHHHhCCCeEe------eeHHHHHHcCcEEEcCCeEEEEEeCCCCcEEEEEcCCCCEEeCCEEEE
Q 012165          209 KVVVVGGGYIGMEVAAAAVGWKLDTT------RYEQLYQQNGVKFVKGASIKNLEAGSDGRVAAVKLEDGSTIDADTIVI  282 (469)
Q Consensus       209 ~vvVvG~G~~g~e~A~~l~~~g~~v~------~~~~~l~~~gV~~~~~~~v~~i~~~~~~~v~~v~~~~g~~i~~D~vi~  282 (469)
                      +|+|||+|.+|.-+|..|. .|.+|+      .-.+.+++.|+.+...... ...        .+.......-++|+||+
T Consensus         4 kI~IiGaGa~G~~~a~~L~-~g~~V~~~~r~~~~~~~l~~~G~~~~~~~~~-~~~--------~~~~~~~~~~~~D~vil   73 (307)
T 3ego_A            4 KIGIIGGGSVGLLCAYYLS-LYHDVTVVTRRQEQAAAIQSEGIRLYKGGEE-FRA--------DCSADTSINSDFDLLVV   73 (307)
T ss_dssp             EEEEECCSHHHHHHHHHHH-TTSEEEEECSCHHHHHHHHHHCEEEEETTEE-EEE--------CCEEESSCCSCCSEEEE
T ss_pred             EEEEECCCHHHHHHHHHHh-cCCceEEEECCHHHHHHHHhCCceEecCCCe-ecc--------cccccccccCCCCEEEE


Q ss_pred             cc
Q 012165          283 GI  284 (469)
Q Consensus       283 a~  284 (469)
                      ++
T Consensus        74 av   75 (307)
T 3ego_A           74 TV   75 (307)
T ss_dssp             CC
T ss_pred             Ee

>3q2o_A Phosphoribosylaminoimidazole carboxylase, ATPase; carboxylates, ATP binding, lyase; 1.96A {Bacillus anthracis} PDB: 3qff_A* 3r5h_A*

Probab=86.46  E-value=1.1  Score=43.42  Aligned_cols=38  Identities=18%  Similarity=0.332  Sum_probs=32.9

Q ss_pred             CCCCcEEEEcCcHHHHHHHHHHHHcCCCCCcEEEEcCCCCC
Q 012165           49 NENREFVIVGGGNAAGYAARTFVEHGMADGRLCIVSKEAYA   89 (469)
Q Consensus        49 ~~~~~vvIIGgG~AGl~aA~~L~~~g~~~~~V~vie~~~~~   89 (469)
                      ...++|+|||+|..|..++..+++.|+   ++.+++..+..
T Consensus        12 ~~~k~IlIlG~G~~g~~la~aa~~~G~---~vi~~d~~~~~   49 (389)
T 3q2o_A           12 LPGKTIGIIGGGQLGRMMALAAKEMGY---KIAVLDPTKNS   49 (389)
T ss_dssp             CTTSEEEEECCSHHHHHHHHHHHHTTC---EEEEEESSTTC
T ss_pred             CCCCEEEEECCCHHHHHHHHHHHHcCC---EEEEEeCCCCC
Confidence            456799999999999999999999998   79999876543

>3t37_A Probable dehydrogenase; BET alpha beta fold, ADP binding, oxidoreductase; HET: FAD; 2.19A {Mesorhizobium loti}

Probab=86.31  E-value=0.81  Score=46.16  Aligned_cols=26  Identities=31%  Similarity=0.339  Sum_probs=21.5

Q ss_pred             CeEEEEcCChHHHHHHHHHHh-CCCeE
Q 012165          208 KKVVVVGGGYIGMEVAAAAVG-WKLDT  233 (469)
Q Consensus       208 ~~vvVvG~G~~g~e~A~~l~~-~g~~v  233 (469)
                      -.++|||+|..|+-+|..|++ -+.+|
T Consensus        18 yD~IIVGsG~aG~v~A~rLse~~~~~V   44 (526)
T 3t37_A           18 CDIVIVGGGSAGSLLAARLSEDPDSRV   44 (526)
T ss_dssp             EEEEEECCSHHHHHHHHHHTTSTTSCE
T ss_pred             eeEEEECccHHHHHHHHHHHhCCCCeE
Confidence            479999999999999999987 34454

>1pjq_A CYSG, siroheme synthase; rossman fold, nucleotide binding motif, SAM, NAD, phosphoserine, transferase/oxidoreductase/lyase complex; HET: SEP PGE SAH; 2.21A {Salmonella typhimurium} SCOP: c.2.1.11 c.90.1.1 e.37.1.1 PDB: 1pjs_A* 1pjt_A*

Probab=86.21  E-value=0.6  Score=46.34  Aligned_cols=70  Identities=11%  Similarity=0.164  Sum_probs=47.3

Q ss_pred             cCCeEEEEcCChHHHHHHHHHHhCCCeEe--------eeHHHHHHcCcEEEcCCeEEEEEeCCCCcEEEEEcCCCCEEeC
Q 012165          206 KAKKVVVVGGGYIGMEVAAAAVGWKLDTT--------RYEQLYQQNGVKFVKGASIKNLEAGSDGRVAAVKLEDGSTIDA  277 (469)
Q Consensus       206 ~~~~vvVvG~G~~g~e~A~~l~~~g~~v~--------~~~~~l~~~gV~~~~~~~v~~i~~~~~~~v~~v~~~~g~~i~~  277 (469)
                      .+++++|||+|.+|...+..|.+.|.+++        .+.++.++.+++++.+.                 +..+.--.+
T Consensus        11 ~~~~vlVvGgG~va~~k~~~L~~~ga~V~vi~~~~~~~~~~l~~~~~i~~~~~~-----------------~~~~~l~~~   73 (457)
T 1pjq_A           11 RDRDCLIVGGGDVAERKARLLLEAGARLTVNALTFIPQFTVWANEGMLTLVEGP-----------------FDETLLDSC   73 (457)
T ss_dssp             BTCEEEEECCSHHHHHHHHHHHHTTBEEEEEESSCCHHHHHHHTTTSCEEEESS-----------------CCGGGGTTC
T ss_pred             CCCEEEEECCCHHHHHHHHHHHhCcCEEEEEcCCCCHHHHHHHhcCCEEEEECC-----------------CCccccCCc
Confidence            57899999999999999999999999987        22222233456555321                 011111258


Q ss_pred             CEEEEccCCc-cCCch
Q 012165          278 DTIVIGIGAK-PTVSP  292 (469)
Q Consensus       278 D~vi~a~G~~-p~~~~  292 (469)
                      |+||.++|.. .|...
T Consensus        74 ~lVi~at~~~~~n~~i   89 (457)
T 1pjq_A           74 WLAIAATDDDTVNQRV   89 (457)
T ss_dssp             SEEEECCSCHHHHHHH
T ss_pred             cEEEEcCCCHHHHHHH
Confidence            9999999987 35443

>1x13_A NAD(P) transhydrogenase subunit alpha; NAD(H)-binding domain, rossmann fold, oxidoreductase; 1.90A {Escherichia coli} PDB: 1x14_A* 1x15_A* 2bru_A*

Probab=86.17  E-value=0.73  Score=44.85  Aligned_cols=34  Identities=15%  Similarity=0.140  Sum_probs=29.9

Q ss_pred             CCcEEEEcCcHHHHHHHHHHHHcCCCCCcEEEEcCCC
Q 012165           51 NREFVIVGGGNAAGYAARTFVEHGMADGRLCIVSKEA   87 (469)
Q Consensus        51 ~~~vvIIGgG~AGl~aA~~L~~~g~~~~~V~vie~~~   87 (469)
                      ..+|+|||+|.+|+.++..++..|.   +|+++|..+
T Consensus       172 g~~V~ViGaG~iG~~aa~~a~~~Ga---~V~v~D~~~  205 (401)
T 1x13_A          172 PAKVMVIGAGVAGLAAIGAANSLGA---IVRAFDTRP  205 (401)
T ss_dssp             CCEEEEECCSHHHHHHHHHHHHTTC---EEEEECSCG
T ss_pred             CCEEEEECCCHHHHHHHHHHHHCCC---EEEEEcCCH
Confidence            5789999999999999999999886   799988654

>3llv_A Exopolyphosphatase-related protein; NAD(P)-binding, rossmann, PSI, M structural genomics; 1.70A {Archaeoglobus fulgidus}

Probab=86.06  E-value=1.1  Score=36.00  Aligned_cols=43  Identities=14%  Similarity=0.169  Sum_probs=32.9

Q ss_pred             CCeEEEEcCChHHHHHHHHHHhCCCeEe------eeHHHHHHcCcEEEc
Q 012165          207 AKKVVVVGGGYIGMEVAAAAVGWKLDTT------RYEQLYQQNGVKFVK  249 (469)
Q Consensus       207 ~~~vvVvG~G~~g~e~A~~l~~~g~~v~------~~~~~l~~~gV~~~~  249 (469)
                      .++++|+|+|.+|..+|..|.+.|.++.      ...+.+++.|+.++.
T Consensus         6 ~~~v~I~G~G~iG~~la~~L~~~g~~V~~id~~~~~~~~~~~~~~~~~~   54 (141)
T 3llv_A            6 RYEYIVIGSEAAGVGLVRELTAAGKKVLAVDKSKEKIELLEDEGFDAVI   54 (141)
T ss_dssp             CCSEEEECCSHHHHHHHHHHHHTTCCEEEEESCHHHHHHHHHTTCEEEE
T ss_pred             CCEEEEECCCHHHHHHHHHHHHCCCeEEEEECCHHHHHHHHHCCCcEEE
Confidence            4689999999999999999999999887      122334556665543

>3hn2_A 2-dehydropantoate 2-reductase; PSI-2, NYSGXRC, structural GE protein structure initiative; 2.50A {Geobacter metallireducens}

Probab=86.04  E-value=0.65  Score=43.44  Aligned_cols=32  Identities=19%  Similarity=0.298  Sum_probs=28.0

Q ss_pred             CcEEEEcCcHHHHHHHHHHHHcCCCCCcEEEEcCC
Q 012165           52 REFVIVGGGNAAGYAARTFVEHGMADGRLCIVSKE   86 (469)
Q Consensus        52 ~~vvIIGgG~AGl~aA~~L~~~g~~~~~V~vie~~   86 (469)
                      .+|.|||+|.-|.+.|..|.+.|+   +|++++++
T Consensus         3 mkI~IiGaGaiG~~~a~~L~~~g~---~V~~~~r~   34 (312)
T 3hn2_A            3 LRIAIVGAGALGLYYGALLQRSGE---DVHFLLRR   34 (312)
T ss_dssp             -CEEEECCSTTHHHHHHHHHHTSC---CEEEECST
T ss_pred             CEEEEECcCHHHHHHHHHHHHCCC---eEEEEEcC
Confidence            479999999999999999999987   79998754

>1ldn_A L-lactate dehydrogenase; oxidoreductase(CHOH(D)-NAD(A)); HET: FBP NAD; 2.50A {Geobacillus stearothermophilus} SCOP: c.2.1.5 d.162.1.1 PDB: 1ldb_A 2ldb_A*

Probab=86.02  E-value=0.92  Score=42.53  Aligned_cols=36  Identities=11%  Similarity=0.362  Sum_probs=30.6

Q ss_pred             CCCcEEEEcCcHHHHHHHHHHHHcCCCCCcEEEEcCC
Q 012165           50 ENREFVIVGGGNAAGYAARTFVEHGMADGRLCIVSKE   86 (469)
Q Consensus        50 ~~~~vvIIGgG~AGl~aA~~L~~~g~~~~~V~vie~~   86 (469)
                      ++.+|+|||+|..|.+.|..|+..+. ..+|.++|.+
T Consensus         5 ~~~kI~IIGaG~vG~sla~~l~~~~~-~~ev~l~Di~   40 (316)
T 1ldn_A            5 GGARVVVIGAGFVGASYVFALMNQGI-ADEIVLIDAN   40 (316)
T ss_dssp             TSCEEEEECCSHHHHHHHHHHHHHTC-CSEEEEECSS
T ss_pred             CCCEEEEECcCHHHHHHHHHHHhCCC-CCEEEEEeCC
Confidence            34689999999999999999998875 4579998864

>1d5t_A Guanine nucleotide dissociation inhibitor; ultra-high resolution, hydrolase inhibitor; 1.04A {Bos taurus} SCOP: c.3.1.3 d.16.1.6 PDB: 1lv0_A* 1gnd_A

Probab=85.94  E-value=0.47  Score=46.74  Aligned_cols=39  Identities=13%  Similarity=0.264  Sum_probs=34.8

Q ss_pred             CCCcEEEEcCcHHHHHHHHHHHHcCCCCCcEEEEcCCCCCCC
Q 012165           50 ENREFVIVGGGNAAGYAARTFVEHGMADGRLCIVSKEAYAPY   91 (469)
Q Consensus        50 ~~~~vvIIGgG~AGl~aA~~L~~~g~~~~~V~vie~~~~~~~   91 (469)
                      ..+||+|||+|++|+++|..|++.|+   +|+++|+++..+.
T Consensus         5 ~~~~v~iiG~G~~gl~~a~~l~~~g~---~v~~~e~~~~~gg   43 (433)
T 1d5t_A            5 EEYDVIVLGTGLTECILSGIMSVNGK---KVLHMDRNPYYGG   43 (433)
T ss_dssp             SBCSEEEECCSHHHHHHHHHHHHTTC---CEEEECSSSSSCT
T ss_pred             CcCCEEEECcCHHHHHHHHHHHHCCC---cEEEEecCCCccc
Confidence            45899999999999999999999987   7999999887653

>3k96_A Glycerol-3-phosphate dehydrogenase [NAD(P)+]; GPSA, IDP01976, oxidoreductase, phospholipid biosynthesis; HET: EPE; 2.10A {Coxiella burnetii}

Probab=85.78  E-value=0.85  Score=43.60  Aligned_cols=38  Identities=18%  Similarity=0.246  Sum_probs=31.1

Q ss_pred             CCCCCCcEEEEcCcHHHHHHHHHHHHcCCCCCcEEEEcCCC
Q 012165           47 FANENREFVIVGGGNAAGYAARTFVEHGMADGRLCIVSKEA   87 (469)
Q Consensus        47 ~~~~~~~vvIIGgG~AGl~aA~~L~~~g~~~~~V~vie~~~   87 (469)
                      |.+++.+|.|||+|.-|.+.|..|++.|+   +|++++.++
T Consensus        25 m~~~~mkI~VIGaG~mG~alA~~La~~G~---~V~l~~r~~   62 (356)
T 3k96_A           25 MEPFKHPIAILGAGSWGTALALVLARKGQ---KVRLWSYES   62 (356)
T ss_dssp             --CCCSCEEEECCSHHHHHHHHHHHTTTC---CEEEECSCH
T ss_pred             ccccCCeEEEECccHHHHHHHHHHHHCCC---eEEEEeCCH
Confidence            33445689999999999999999999987   799988653

>3fi9_A Malate dehydrogenase; structural genomics, oxidoreductase, PSI-2, protein structur initiative; 1.90A {Porphyromonas gingivalis}

Probab=85.64  E-value=0.94  Score=42.95  Aligned_cols=36  Identities=22%  Similarity=0.334  Sum_probs=30.4

Q ss_pred             CCCcEEEEcC-cHHHHHHHHHHHHcCCCCCcEEEEcCC
Q 012165           50 ENREFVIVGG-GNAAGYAARTFVEHGMADGRLCIVSKE   86 (469)
Q Consensus        50 ~~~~vvIIGg-G~AGl~aA~~L~~~g~~~~~V~vie~~   86 (469)
                      .+.+|+|||+ |.-|.++|..+...|. ..+|+++|..
T Consensus         7 ~~~KV~ViGaaG~VG~~~a~~l~~~g~-~~evvLiDi~   43 (343)
T 3fi9_A            7 TEEKLTIVGAAGMIGSNMAQTAAMMRL-TPNLCLYDPF   43 (343)
T ss_dssp             CSSEEEEETTTSHHHHHHHHHHHHTTC-CSCEEEECSC
T ss_pred             CCCEEEEECCCChHHHHHHHHHHhcCC-CCEEEEEeCC
Confidence            3468999997 9999999999999886 4489998854

>3ghy_A Ketopantoate reductase protein; oxidoreductase, NAD-binding domain, PSI-2, NYSGXRC, structur genomics, protein structure initiative; 2.00A {Ralstonia solanacearum}

Probab=85.57  E-value=0.91  Score=42.90  Aligned_cols=31  Identities=23%  Similarity=0.514  Sum_probs=28.1

Q ss_pred             CcEEEEcCcHHHHHHHHHHHHcCCCCCcEEEEcC
Q 012165           52 REFVIVGGGNAAGYAARTFVEHGMADGRLCIVSK   85 (469)
Q Consensus        52 ~~vvIIGgG~AGl~aA~~L~~~g~~~~~V~vie~   85 (469)
                      .+|.|||+|.-|.+.|..|.+.|+   +|+++++
T Consensus         4 mkI~IiGaG~~G~~~a~~L~~~g~---~V~~~~r   34 (335)
T 3ghy_A            4 TRICIVGAGAVGGYLGARLALAGE---AINVLAR   34 (335)
T ss_dssp             CCEEEESCCHHHHHHHHHHHHTTC---CEEEECC
T ss_pred             CEEEEECcCHHHHHHHHHHHHCCC---EEEEEEC
Confidence            489999999999999999999987   7998875

>3orq_A N5-carboxyaminoimidazole ribonucleotide synthetas; ATP-grAsp superfamily, ligase,biosynthetic protein; HET: MSE ADP; 2.23A {Staphylococcus aureus subsp} PDB: 3orr_A

Probab=85.53  E-value=1.2  Score=42.80  Aligned_cols=38  Identities=16%  Similarity=0.302  Sum_probs=33.1

Q ss_pred             CCCCcEEEEcCcHHHHHHHHHHHHcCCCCCcEEEEcCCCCC
Q 012165           49 NENREFVIVGGGNAAGYAARTFVEHGMADGRLCIVSKEAYA   89 (469)
Q Consensus        49 ~~~~~vvIIGgG~AGl~aA~~L~~~g~~~~~V~vie~~~~~   89 (469)
                      ..+++|.|||+|.-|...+..+++.|+   ++.+++..+..
T Consensus        10 ~~~~~IlIlG~G~lg~~la~aa~~lG~---~viv~d~~~~~   47 (377)
T 3orq_A           10 KFGATIGIIGGGQLGKMMAQSAQKMGY---KVVVLDPSEDC   47 (377)
T ss_dssp             CTTCEEEEECCSHHHHHHHHHHHHTTC---EEEEEESCTTC
T ss_pred             CCCCEEEEECCCHHHHHHHHHHHHCCC---EEEEEECCCCC
Confidence            456789999999999999999999998   79999876654

>1l7d_A Nicotinamide nucleotide transhydrogenase, subunit alpha 1; transhydrogenase domain I, oxidoreductase; 1.81A {Rhodospirillum rubrum} SCOP: c.2.1.4 c.23.12.2 PDB: 1hzz_A* 1f8g_A 1l7e_A* 1u28_A* 1u2d_A* 1u2g_A* 1xlt_A* 2oo5_A* 2oor_A* 2frd_A* 2fsv_A* 1nm5_A* 2fr8_A* 1ptj_A*

Probab=85.47  E-value=0.9  Score=43.90  Aligned_cols=35  Identities=20%  Similarity=0.113  Sum_probs=30.3

Q ss_pred             CCCcEEEEcCcHHHHHHHHHHHHcCCCCCcEEEEcCCC
Q 012165           50 ENREFVIVGGGNAAGYAARTFVEHGMADGRLCIVSKEA   87 (469)
Q Consensus        50 ~~~~vvIIGgG~AGl~aA~~L~~~g~~~~~V~vie~~~   87 (469)
                      ...+|+|+|+|.+|+.++..++..|.   +|+++|..+
T Consensus       171 ~g~~V~ViGaG~iG~~aa~~a~~~Ga---~V~~~d~~~  205 (384)
T 1l7d_A          171 PPARVLVFGVGVAGLQAIATAKRLGA---VVMATDVRA  205 (384)
T ss_dssp             CCCEEEEECCSHHHHHHHHHHHHTTC---EEEEECSCS
T ss_pred             CCCEEEEECCCHHHHHHHHHHHHCCC---EEEEEeCCH
Confidence            46799999999999999999999986   688888653

>3ghy_A Ketopantoate reductase protein; oxidoreductase, NAD-binding domain, PSI-2, NYSGXRC, structur genomics, protein structure initiative; 2.00A {Ralstonia solanacearum}

Probab=85.17  E-value=1.1  Score=42.29  Aligned_cols=72  Identities=17%  Similarity=0.243  Sum_probs=46.2

Q ss_pred             CeEEEEcCChHHHHHHHHHHhCCCeEeee-----HHHHHHcCcEEEcCCeEEEEEeCCCCcEEEEEcCCC-CEEeCCEEE
Q 012165          208 KKVVVVGGGYIGMEVAAAAVGWKLDTTRY-----EQLYQQNGVKFVKGASIKNLEAGSDGRVAAVKLEDG-STIDADTIV  281 (469)
Q Consensus       208 ~~vvVvG~G~~g~e~A~~l~~~g~~v~~~-----~~~l~~~gV~~~~~~~v~~i~~~~~~~v~~v~~~~g-~~i~~D~vi  281 (469)
                      .+|.|||+|.+|.-+|..|++.|.+|+.+     .+.+++.|+.+.... .. ...  .  + .+. .+- ..-++|+||
T Consensus         4 mkI~IiGaG~~G~~~a~~L~~~g~~V~~~~r~~~~~~~~~~g~~~~~~~-~~-~~~--~--~-~~~-~~~~~~~~~D~Vi   75 (335)
T 3ghy_A            4 TRICIVGAGAVGGYLGARLALAGEAINVLARGATLQALQTAGLRLTEDG-AT-HTL--P--V-RAT-HDAAALGEQDVVI   75 (335)
T ss_dssp             CCEEEESCCHHHHHHHHHHHHTTCCEEEECCHHHHHHHHHTCEEEEETT-EE-EEE--C--C-EEE-SCHHHHCCCSEEE
T ss_pred             CEEEEECcCHHHHHHHHHHHHCCCEEEEEEChHHHHHHHHCCCEEecCC-Ce-EEE--e--e-eEE-CCHHHcCCCCEEE
Confidence            57999999999999999999999988822     234566787765321 11 110  0  0 111 111 113589999


Q ss_pred             EccCCc
Q 012165          282 IGIGAK  287 (469)
Q Consensus       282 ~a~G~~  287 (469)
                      +++...
T Consensus        76 lavk~~   81 (335)
T 3ghy_A           76 VAVKAP   81 (335)
T ss_dssp             ECCCHH
T ss_pred             EeCCch
Confidence            998654

>1kjq_A GART 2, phosphoribosylglycinamide formyltransferase 2, 5'-; ATP-grAsp, purine biosynthesis, nucleotide; HET: ADP MPO; 1.05A {Escherichia coli} SCOP: b.84.2.1 c.30.1.1 d.142.1.2 PDB: 1kj9_A* 1kji_A* 1kjj_A* 1kj8_A* 1eyz_A* 1ez1_A*

Probab=85.09  E-value=0.94  Score=43.70  Aligned_cols=40  Identities=15%  Similarity=0.219  Sum_probs=33.7

Q ss_pred             cCCCCCCcEEEEcCcHHHHHHHHHHHHcCCCCCcEEEEcCCCC
Q 012165           46 SFANENREFVIVGGGNAAGYAARTFVEHGMADGRLCIVSKEAY   88 (469)
Q Consensus        46 ~~~~~~~~vvIIGgG~AGl~aA~~L~~~g~~~~~V~vie~~~~   88 (469)
                      ||.+++++|+|+|+|..|...+..+++.|+   ++.+++..+.
T Consensus         6 pm~~~~~~ili~g~g~~~~~~~~a~~~~G~---~v~~~~~~~~   45 (391)
T 1kjq_A            6 ALRPAATRVMLLGSGELGKEVAIECQRLGV---EVIAVDRYAD   45 (391)
T ss_dssp             TTSTTCCEEEEESCSHHHHHHHHHHHTTTC---EEEEEESSTT
T ss_pred             CCCCCCCEEEEECCCHHHHHHHHHHHHcCC---EEEEEECCCC
Confidence            455566799999999999999999999987   7888887654

>3ado_A Lambda-crystallin; L-gulonate 3-dehydrogenase, structural genomics, riken struc genomics/proteomics initiative, RSGI, acetylation; 1.70A {Oryctolagus cuniculus} PDB: 3adp_A* 3f3s_A*

Probab=85.00  E-value=0.81  Score=42.90  Aligned_cols=34  Identities=26%  Similarity=0.360  Sum_probs=30.3

Q ss_pred             CCcEEEEcCcHHHHHHHHHHHHcCCCCCcEEEEcCCC
Q 012165           51 NREFVIVGGGNAAGYAARTFVEHGMADGRLCIVSKEA   87 (469)
Q Consensus        51 ~~~vvIIGgG~AGl~aA~~L~~~g~~~~~V~vie~~~   87 (469)
                      ..+|.|||+|.-|...|..++..|+   +|+++|..+
T Consensus         6 ~~~VaViGaG~MG~giA~~~a~~G~---~V~l~D~~~   39 (319)
T 3ado_A            6 AGDVLIVGSGLVGRSWAMLFASGGF---RVKLYDIEP   39 (319)
T ss_dssp             -CEEEEECCSHHHHHHHHHHHHTTC---CEEEECSCH
T ss_pred             CCeEEEECCcHHHHHHHHHHHhCCC---eEEEEECCH
Confidence            4689999999999999999999998   799999765

>2ew2_A 2-dehydropantoate 2-reductase, putative; alpha-structure, alpha-beta structure, structural genomics, protein structure initiative; HET: MSE; 2.00A {Enterococcus faecalis}

Probab=84.96  E-value=0.89  Score=42.24  Aligned_cols=32  Identities=13%  Similarity=0.232  Sum_probs=28.4

Q ss_pred             CcEEEEcCcHHHHHHHHHHHHcCCCCCcEEEEcCC
Q 012165           52 REFVIVGGGNAAGYAARTFVEHGMADGRLCIVSKE   86 (469)
Q Consensus        52 ~~vvIIGgG~AGl~aA~~L~~~g~~~~~V~vie~~   86 (469)
                      .+|.|||+|.-|...|..|.+.|+   +|++++++
T Consensus         4 m~i~iiG~G~~G~~~a~~l~~~g~---~V~~~~r~   35 (316)
T 2ew2_A            4 MKIAIAGAGAMGSRLGIMLHQGGN---DVTLIDQW   35 (316)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHTTC---EEEEECSC
T ss_pred             CeEEEECcCHHHHHHHHHHHhCCC---cEEEEECC
Confidence            379999999999999999999987   79988754

>3h5n_A MCCB protein; ubiquitin-activating enzyme, microcin, protein structure, MCCC7, peptide antibiotics, N-P bond formation, transferase; HET: ATP; 1.90A {Escherichia coli} PDB: 3h5r_A 3h9g_A 3h9j_A* 3h9q_A 3h5a_A

Probab=84.95  E-value=0.83  Score=43.58  Aligned_cols=37  Identities=19%  Similarity=0.466  Sum_probs=32.6

Q ss_pred             CCCcEEEEcCcHHHHHHHHHHHHcCCCCCcEEEEcCCCC
Q 012165           50 ENREFVIVGGGNAAGYAARTFVEHGMADGRLCIVSKEAY   88 (469)
Q Consensus        50 ~~~~vvIIGgG~AGl~aA~~L~~~g~~~~~V~vie~~~~   88 (469)
                      ...+|+|||+|-.|..+|..|++.|.  ++++|+|.+..
T Consensus       117 ~~~~VlvvG~GglGs~va~~La~aGv--g~i~lvD~D~V  153 (353)
T 3h5n_A          117 KNAKVVILGCGGIGNHVSVILATSGI--GEIILIDNDQI  153 (353)
T ss_dssp             HTCEEEEECCSHHHHHHHHHHHHHTC--SEEEEEECCBC
T ss_pred             hCCeEEEECCCHHHHHHHHHHHhCCC--CeEEEECCCcC
Confidence            35789999999999999999999996  48999998754

>1bg6_A N-(1-D-carboxylethyl)-L-norvaline dehydrogenase; L) stereospecific opine dehydrogenase, oxidoreductase; 1.80A {Arthrobacter SP} SCOP: a.100.1.5 c.2.1.6

Probab=84.91  E-value=0.92  Score=43.14  Aligned_cols=32  Identities=16%  Similarity=0.248  Sum_probs=28.5

Q ss_pred             CcEEEEcCcHHHHHHHHHHHHcCCCCCcEEEEcCC
Q 012165           52 REFVIVGGGNAAGYAARTFVEHGMADGRLCIVSKE   86 (469)
Q Consensus        52 ~~vvIIGgG~AGl~aA~~L~~~g~~~~~V~vie~~   86 (469)
                      .+|.|||+|.-|...|..|.+.|+   +|+++++.
T Consensus         5 mki~iiG~G~~G~~~a~~L~~~g~---~V~~~~r~   36 (359)
T 1bg6_A            5 KTYAVLGLGNGGHAFAAYLALKGQ---SVLAWDID   36 (359)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHTTC---EEEEECSC
T ss_pred             CeEEEECCCHHHHHHHHHHHhCCC---EEEEEeCC
Confidence            589999999999999999999987   79888754

>2ew2_A 2-dehydropantoate 2-reductase, putative; alpha-structure, alpha-beta structure, structural genomics, protein structure initiative; HET: MSE; 2.00A {Enterococcus faecalis}

Probab=84.90  E-value=0.72  Score=42.91  Aligned_cols=41  Identities=20%  Similarity=0.198  Sum_probs=31.9

Q ss_pred             CeEEEEcCChHHHHHHHHHHhCCCeEee------eHHHHHHcCcEEE
Q 012165          208 KKVVVVGGGYIGMEVAAAAVGWKLDTTR------YEQLYQQNGVKFV  248 (469)
Q Consensus       208 ~~vvVvG~G~~g~e~A~~l~~~g~~v~~------~~~~l~~~gV~~~  248 (469)
                      .+|.|||+|.+|.-+|..|.+.|.+|+.      ..+.+++.|+.+.
T Consensus         4 m~i~iiG~G~~G~~~a~~l~~~g~~V~~~~r~~~~~~~~~~~g~~~~   50 (316)
T 2ew2_A            4 MKIAIAGAGAMGSRLGIMLHQGGNDVTLIDQWPAHIEAIRKNGLIAD   50 (316)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHTTCEEEEECSCHHHHHHHHHHCEEEE
T ss_pred             CeEEEECcCHHHHHHHHHHHhCCCcEEEEECCHHHHHHHHhCCEEEE
Confidence            4799999999999999999999998871      1234455576654

>3nv9_A Malic enzyme; rossmann fold, oxidoreductase; 2.25A {Entamoeba histolytica}

Probab=84.74  E-value=0.83  Score=44.57  Aligned_cols=40  Identities=15%  Similarity=0.307  Sum_probs=34.0

Q ss_pred             CCCCcEEEEcCcHHHHHHHHHHHHcCCCCCcEEEEcCCCC
Q 012165           49 NENREFVIVGGGNAAGYAARTFVEHGMADGRLCIVSKEAY   88 (469)
Q Consensus        49 ~~~~~vvIIGgG~AGl~aA~~L~~~g~~~~~V~vie~~~~   88 (469)
                      ....+|||.|+|.||+.+|..|.+.|.+..+|.++|+...
T Consensus       217 l~d~riV~~GAGaAGigia~ll~~~G~~~~~i~l~D~~Gl  256 (487)
T 3nv9_A          217 IHECRMVFIGAGSSNTTCLRLIVTAGADPKKIVMFDSKGS  256 (487)
T ss_dssp             GGGCCEEEECCSHHHHHHHHHHHHTTCCGGGEEEEETTEE
T ss_pred             hhhcEEEEECCCHHHHHHHHHHHHcCCCcccEEEEecccc
Confidence            3457899999999999999999999985568999997653

>4huj_A Uncharacterized protein; PSI-biology, nysgrc, structural genomics, NEW YORK structura genomics research consortium, dinucleotide-binding; 1.77A {Sinorhizobium meliloti}

Probab=84.74  E-value=0.75  Score=40.57  Aligned_cols=34  Identities=21%  Similarity=0.326  Sum_probs=28.4

Q ss_pred             CCCcEEEEcCcHHHHHHHHHHHHcCCCCCcEEE-EcCC
Q 012165           50 ENREFVIVGGGNAAGYAARTFVEHGMADGRLCI-VSKE   86 (469)
Q Consensus        50 ~~~~vvIIGgG~AGl~aA~~L~~~g~~~~~V~v-ie~~   86 (469)
                      ++.+|.|||+|.-|.+.|..|.+.|+   +|++ .+++
T Consensus        22 ~mmkI~IIG~G~mG~~la~~l~~~g~---~V~~v~~r~   56 (220)
T 4huj_A           22 SMTTYAIIGAGAIGSALAERFTAAQI---PAIIANSRG   56 (220)
T ss_dssp             GSCCEEEEECHHHHHHHHHHHHHTTC---CEEEECTTC
T ss_pred             cCCEEEEECCCHHHHHHHHHHHhCCC---EEEEEECCC
Confidence            34589999999999999999999987   6877 5543

>3l9w_A Glutathione-regulated potassium-efflux system Pro linker, ancillary protein KEFF; potassium channel regulation, domains, antiport; HET: FMN AMP GSH; 1.75A {Escherichia coli} PDB: 3eyw_A* 3l9x_A*

Probab=84.63  E-value=0.8  Score=44.73  Aligned_cols=33  Identities=15%  Similarity=0.423  Sum_probs=30.1

Q ss_pred             CcEEEEcCcHHHHHHHHHHHHcCCCCCcEEEEcCCC
Q 012165           52 REFVIVGGGNAAGYAARTFVEHGMADGRLCIVSKEA   87 (469)
Q Consensus        52 ~~vvIIGgG~AGl~aA~~L~~~g~~~~~V~vie~~~   87 (469)
                      .+|+|||.|.-|...|..|.+.|+   +|++||.++
T Consensus         5 ~~viIiG~Gr~G~~va~~L~~~g~---~vvvId~d~   37 (413)
T 3l9w_A            5 MRVIIAGFGRFGQITGRLLLSSGV---KMVVLDHDP   37 (413)
T ss_dssp             CSEEEECCSHHHHHHHHHHHHTTC---CEEEEECCH
T ss_pred             CeEEEECCCHHHHHHHHHHHHCCC---CEEEEECCH
Confidence            479999999999999999999987   799999764

>1lld_A L-lactate dehydrogenase; oxidoreductase(CHOH (D)-NAD (A)); HET: NAD; 2.00A {Bifidobacterium longum subsp} SCOP: c.2.1.5 d.162.1.1 PDB: 1lth_T*

Probab=84.63  E-value=1.1  Score=42.03  Aligned_cols=34  Identities=12%  Similarity=0.303  Sum_probs=29.4

Q ss_pred             CcEEEEcCcHHHHHHHHHHHHcCCCCCcEEEEcCC
Q 012165           52 REFVIVGGGNAAGYAARTFVEHGMADGRLCIVSKE   86 (469)
Q Consensus        52 ~~vvIIGgG~AGl~aA~~L~~~g~~~~~V~vie~~   86 (469)
                      .+|+|||+|.-|...|..|.+.|+ ..+|++++.+
T Consensus         8 mkI~IiGaG~vG~~~a~~l~~~g~-~~~V~l~d~~   41 (319)
T 1lld_A            8 TKLAVIGAGAVGSTLAFAAAQRGI-AREIVLEDIA   41 (319)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHTTC-CSEEEEECSS
T ss_pred             CEEEEECCCHHHHHHHHHHHhCCC-CCEEEEEeCC
Confidence            489999999999999999999875 3479998865

>3ius_A Uncharacterized conserved protein; APC63810, silicibacter pomeroyi DSS, structural genomics, PSI-2, protein structure initiative; HET: MSE; 1.66A {Ruegeria pomeroyi dss-3}

Probab=84.59  E-value=0.74  Score=42.12  Aligned_cols=33  Identities=21%  Similarity=0.346  Sum_probs=28.8

Q ss_pred             CCcEEEEcCcHHHHHHHHHHHHcCCCCCcEEEEcCC
Q 012165           51 NREFVIVGGGNAAGYAARTFVEHGMADGRLCIVSKE   86 (469)
Q Consensus        51 ~~~vvIIGgG~AGl~aA~~L~~~g~~~~~V~vie~~   86 (469)
                      +.+|+|.|+|+-|...+..|.+.|+   +|+.+.+.
T Consensus         5 ~~~ilVtGaG~iG~~l~~~L~~~g~---~V~~~~r~   37 (286)
T 3ius_A            5 TGTLLSFGHGYTARVLSRALAPQGW---RIIGTSRN   37 (286)
T ss_dssp             CCEEEEETCCHHHHHHHHHHGGGTC---EEEEEESC
T ss_pred             cCcEEEECCcHHHHHHHHHHHHCCC---EEEEEEcC
Confidence            3689999999999999999999987   78887654

>1rp0_A ARA6, thiazole biosynthetic enzyme; protein ligand complex, biosynthetic protein; HET: AHZ HTO; 1.60A {Arabidopsis thaliana} SCOP: c.3.1.6

Probab=84.53  E-value=0.75  Score=42.32  Aligned_cols=29  Identities=28%  Similarity=0.342  Sum_probs=25.7

Q ss_pred             CeEEEEcCChHHHHHHHHHHhC-CCeEeee
Q 012165          208 KKVVVVGGGYIGMEVAAAAVGW-KLDTTRY  236 (469)
Q Consensus       208 ~~vvVvG~G~~g~e~A~~l~~~-g~~v~~~  236 (469)
                      .+|+|||+|++|+.+|..|++. |.+|+.+
T Consensus        40 ~dVvIIGgG~aGl~aA~~la~~~G~~V~vi   69 (284)
T 1rp0_A           40 TDVVVVGAGSAGLSAAYEISKNPNVQVAII   69 (284)
T ss_dssp             EEEEEECCSHHHHHHHHHHHTSTTSCEEEE
T ss_pred             cCEEEECccHHHHHHHHHHHHcCCCeEEEE
Confidence            4799999999999999999997 8888733

>3phh_A Shikimate dehydrogenase; shikimate pathway, helicobacter PYL oxidoreductase, alpha/beta domain, rossmann fold; HET: SKM; 1.42A {Helicobacter pylori} PDB: 3phg_A* 3phi_A* 3phj_A* 4foo_A 4fpx_A 4fos_A* 4fr5_A* 4fq8_A*

Probab=84.40  E-value=1.2  Score=40.72  Aligned_cols=33  Identities=18%  Similarity=0.442  Sum_probs=29.5

Q ss_pred             CCcEEEEcCcHHHHHHHHHHHHcCCCCCcEEEEcCC
Q 012165           51 NREFVIVGGGNAAGYAARTFVEHGMADGRLCIVSKE   86 (469)
Q Consensus        51 ~~~vvIIGgG~AGl~aA~~L~~~g~~~~~V~vie~~   86 (469)
                      .++++|||+|-+|-+++..|.+.|.   +|+|+++.
T Consensus       118 ~k~vlvlGaGGaaraia~~L~~~G~---~v~V~nRt  150 (269)
T 3phh_A          118 YQNALILGAGGSAKALACELKKQGL---QVSVLNRS  150 (269)
T ss_dssp             CCEEEEECCSHHHHHHHHHHHHTTC---EEEEECSS
T ss_pred             CCEEEEECCCHHHHHHHHHHHHCCC---EEEEEeCC
Confidence            6799999999999999999999984   89998755

>3ihm_A Styrene monooxygenase A; rossman fold, anti-parallel beta strands, dimer, cavity, oxidoreductase; 2.30A {Pseudomonas putida}

Probab=84.24  E-value=0.69  Score=45.46  Aligned_cols=28  Identities=25%  Similarity=0.429  Sum_probs=25.8

Q ss_pred             CCeEEEEcCChHHHHHHHHHHhCCCeEe
Q 012165          207 AKKVVVVGGGYIGMEVAAAAVGWKLDTT  234 (469)
Q Consensus       207 ~~~vvVvG~G~~g~e~A~~l~~~g~~v~  234 (469)
                      .++|+|||+|+.|+.+|..|++.|.+|+
T Consensus        22 ~~~ViIVGaGpaGl~~A~~La~~G~~V~   49 (430)
T 3ihm_A           22 KKRIGIVGAGTAGLHLGLFLRQHDVDVT   49 (430)
T ss_dssp             -CEEEEECCHHHHHHHHHHHHHTTCEEE
T ss_pred             CCCEEEECCcHHHHHHHHHHHHCCCeEE
Confidence            3689999999999999999999999987

>2raf_A Putative dinucleotide-binding oxidoreductase; NP_786167.1, NADP oxidoreductase coenzyme F420-dependent, structural genomics; HET: MSE NAP; 1.60A {Lactobacillus plantarum WCFS1}

Probab=84.23  E-value=1.3  Score=38.75  Aligned_cols=35  Identities=20%  Similarity=0.261  Sum_probs=30.0

Q ss_pred             CCcEEEEcCcHHHHHHHHHHHHcCCCCCcEEEEcCCCC
Q 012165           51 NREFVIVGGGNAAGYAARTFVEHGMADGRLCIVSKEAY   88 (469)
Q Consensus        51 ~~~vvIIGgG~AGl~aA~~L~~~g~~~~~V~vie~~~~   88 (469)
                      ..+|.|||+|.-|.+.|..|.+.|+   +|+++++++.
T Consensus        19 ~~~I~iiG~G~mG~~la~~l~~~g~---~V~~~~~~~~   53 (209)
T 2raf_A           19 GMEITIFGKGNMGQAIGHNFEIAGH---EVTYYGSKDQ   53 (209)
T ss_dssp             -CEEEEECCSHHHHHHHHHHHHTTC---EEEEECTTCC
T ss_pred             CCEEEEECCCHHHHHHHHHHHHCCC---EEEEEcCCHH
Confidence            3579999999999999999999987   7999987643

>3p7m_A Malate dehydrogenase; putative dehydrogenase, enzyme, structural genomics, center structural genomics of infectious diseases, csgid; 2.20A {Francisella tularensis}

Probab=83.98  E-value=1.3  Score=41.52  Aligned_cols=37  Identities=16%  Similarity=0.303  Sum_probs=31.2

Q ss_pred             CCCCcEEEEcCcHHHHHHHHHHHHcCCCCCcEEEEcCCC
Q 012165           49 NENREFVIVGGGNAAGYAARTFVEHGMADGRLCIVSKEA   87 (469)
Q Consensus        49 ~~~~~vvIIGgG~AGl~aA~~L~~~g~~~~~V~vie~~~   87 (469)
                      |.+.+|.|||+|..|.+.|..|+..+. . +|+++|..+
T Consensus         3 m~~~kI~iiGaG~vG~~~a~~l~~~~~-~-~v~l~Di~~   39 (321)
T 3p7m_A            3 MARKKITLVGAGNIGGTLAHLALIKQL-G-DVVLFDIAQ   39 (321)
T ss_dssp             CCCCEEEEECCSHHHHHHHHHHHHTTC-C-EEEEECSSS
T ss_pred             CCCCEEEEECCCHHHHHHHHHHHhCCC-c-eEEEEeCCh
Confidence            334689999999999999999999886 3 899988654

>4e4t_A Phosphoribosylaminoimidazole carboxylase, ATPase; structural genomics, seattle structural genomics center for infectious disease, ssgcid; 1.55A {Burkholderia ambifaria} PDB: 3uvz_A

Probab=83.96  E-value=1.2  Score=43.59  Aligned_cols=38  Identities=16%  Similarity=0.213  Sum_probs=32.6

Q ss_pred             CCCCCcEEEEcCcHHHHHHHHHHHHcCCCCCcEEEEcCCCC
Q 012165           48 ANENREFVIVGGGNAAGYAARTFVEHGMADGRLCIVSKEAY   88 (469)
Q Consensus        48 ~~~~~~vvIIGgG~AGl~aA~~L~~~g~~~~~V~vie~~~~   88 (469)
                      .+..++|+|+|+|.-|...+..+++.|+   ++.+++..+.
T Consensus        32 ~~~~~~IlIlG~G~lg~~~~~aa~~lG~---~v~v~d~~~~   69 (419)
T 4e4t_A           32 ILPGAWLGMVGGGQLGRMFCFAAQSMGY---RVAVLDPDPA   69 (419)
T ss_dssp             CCTTCEEEEECCSHHHHHHHHHHHHTTC---EEEEECSCTT
T ss_pred             CCCCCEEEEECCCHHHHHHHHHHHHCCC---EEEEECCCCc
Confidence            3456799999999999999999999998   7889986654

>3vh1_A Ubiquitin-like modifier-activating enzyme ATG7; autophagy, zinc binding, metal binding protein; 3.00A {Saccharomyces cerevisiae} PDB: 3vh2_A

Probab=83.91  E-value=0.99  Score=45.88  Aligned_cols=37  Identities=19%  Similarity=0.534  Sum_probs=32.7

Q ss_pred             CCCcEEEEcCcHHHHHHHHHHHHcCCCCCcEEEEcCCCC
Q 012165           50 ENREFVIVGGGNAAGYAARTFVEHGMADGRLCIVSKEAY   88 (469)
Q Consensus        50 ~~~~vvIIGgG~AGl~aA~~L~~~g~~~~~V~vie~~~~   88 (469)
                      ...+|+|||+|-.|..+|..|++.|.  ++|+|+|.+..
T Consensus       326 ~~~kVLIVGaGGLGs~va~~La~aGV--G~ItLvD~D~V  362 (598)
T 3vh1_A          326 KNTKVLLLGAGTLGCYVSRALIAWGV--RKITFVDNGTV  362 (598)
T ss_dssp             HTCEEEEECCSHHHHHHHHHHHTTTC--CEEEEECCSBC
T ss_pred             hCCeEEEECCCHHHHHHHHHHHHcCC--CEEEEECCCcc
Confidence            35789999999999999999999997  48999998754

>4dgk_A Phytoene dehydrogenase; the FAD/NAD(P)-binding rossmann fold, oxidoreductase; 2.35A {Pantoea ananatis}

Probab=83.91  E-value=1.4  Score=43.88  Aligned_cols=46  Identities=9%  Similarity=0.232  Sum_probs=37.6

Q ss_pred             hHHHHCCcEEEeCCcEEEEeCCCcE---EEeCCCeEEEeccEEeccCCC
Q 012165          128 EWYKEKGIEMIYQDPVTSIDIEKQT---LITNSGKLLKYGSLIVATGCT  173 (469)
Q Consensus       128 ~~~~~~~i~~~~~~~v~~id~~~~~---v~~~~g~~~~yd~lVlAtG~~  173 (469)
                      +.+++.|.+++++++|++|..++..   |++.+|+++.+|+||.+++..
T Consensus       229 ~~~~~~Gg~I~~~~~V~~I~~~~~~~~gV~~~~g~~~~ad~VV~~a~~~  277 (501)
T 4dgk_A          229 KLFQDLGGEVVLNARVSHMETTGNKIEAVHLEDGRRFLTQAVASNADVV  277 (501)
T ss_dssp             HHHHHTTCEEECSCCEEEEEEETTEEEEEEETTSCEEECSCEEECCC--
T ss_pred             HHHHHhCCceeeecceeEEEeeCCeEEEEEecCCcEEEcCEEEECCCHH
Confidence            3456789999999999999877653   678999999999999988754

>1y8q_A Ubiquitin-like 1 activating enzyme E1A; SUMO, heterodimer, UBL, ligase; HET: ATP; 2.25A {Homo sapiens} PDB: 1y8r_A* 3kyc_A* 3kyd_A*

Probab=83.75  E-value=1.1  Score=42.62  Aligned_cols=37  Identities=16%  Similarity=0.284  Sum_probs=32.8

Q ss_pred             CCCcEEEEcCcHHHHHHHHHHHHcCCCCCcEEEEcCCCC
Q 012165           50 ENREFVIVGGGNAAGYAARTFVEHGMADGRLCIVSKEAY   88 (469)
Q Consensus        50 ~~~~vvIIGgG~AGl~aA~~L~~~g~~~~~V~vie~~~~   88 (469)
                      ...+|+|||.|-.|..+|..|.+.|..  +++|+|.+..
T Consensus        35 ~~~~VlivG~GGlG~~ia~~La~~Gvg--~itlvD~d~V   71 (346)
T 1y8q_A           35 RASRVLLVGLKGLGAEIAKNLILAGVK--GLTMLDHEQV   71 (346)
T ss_dssp             HTCEEEEECCSHHHHHHHHHHHHHTCS--EEEEECCCBC
T ss_pred             hCCeEEEECCCHHHHHHHHHHHHcCCC--EEEEEECCCc
Confidence            357999999999999999999999974  8999998764

>3dhn_A NAD-dependent epimerase/dehydratase; reductase, PF01370, Q89Z24_bactn, NESG, BTR310, structural genomics, PSI-2; 2.00A {Bacteroides thetaiotaomicron}

Probab=83.60  E-value=1  Score=39.47  Aligned_cols=34  Identities=15%  Similarity=0.346  Sum_probs=29.8

Q ss_pred             CCcEEEEcC-cHHHHHHHHHHHHcCCCCCcEEEEcCCC
Q 012165           51 NREFVIVGG-GNAAGYAARTFVEHGMADGRLCIVSKEA   87 (469)
Q Consensus        51 ~~~vvIIGg-G~AGl~aA~~L~~~g~~~~~V~vie~~~   87 (469)
                      +++|+|.|| |.-|...+..|.+.|+   +|+++++.+
T Consensus         4 m~~ilItGatG~iG~~l~~~L~~~g~---~V~~~~r~~   38 (227)
T 3dhn_A            4 VKKIVLIGASGFVGSALLNEALNRGF---EVTAVVRHP   38 (227)
T ss_dssp             CCEEEEETCCHHHHHHHHHHHHTTTC---EEEEECSCG
T ss_pred             CCEEEEEcCCchHHHHHHHHHHHCCC---EEEEEEcCc
Confidence            468999996 9999999999999987   799988764

>1pjc_A Protein (L-alanine dehydrogenase); oxidoreductase, NAD; HET: NAD; 2.00A {Phormidium lapideum} SCOP: c.2.1.4 c.23.12.2 PDB: 1pjb_A* 1say_A

Probab=83.48  E-value=1.1  Score=42.77  Aligned_cols=34  Identities=29%  Similarity=0.380  Sum_probs=29.8

Q ss_pred             CCcEEEEcCcHHHHHHHHHHHHcCCCCCcEEEEcCCC
Q 012165           51 NREFVIVGGGNAAGYAARTFVEHGMADGRLCIVSKEA   87 (469)
Q Consensus        51 ~~~vvIIGgG~AGl~aA~~L~~~g~~~~~V~vie~~~   87 (469)
                      ..+|+|+|+|.+|..++..|+..|.   +|++++..+
T Consensus       167 ~~~VlViGaGgvG~~aa~~a~~~Ga---~V~v~dr~~  200 (361)
T 1pjc_A          167 PGKVVILGGGVVGTEAAKMAVGLGA---QVQIFDINV  200 (361)
T ss_dssp             CCEEEEECCSHHHHHHHHHHHHTTC---EEEEEESCH
T ss_pred             CCEEEEECCCHHHHHHHHHHHhCCC---EEEEEeCCH
Confidence            3789999999999999999999986   799987653

>4gsl_A Ubiquitin-like modifier-activating enzyme ATG7; ubiquitin-like protein activation enzyme, ubiquitin-like Pro transfer enzyme, protein transport; 2.70A {Saccharomyces cerevisiae} PDB: 3vh2_A 4gsk_A 3vh1_A

Probab=83.47  E-value=1.2  Score=45.37  Aligned_cols=37  Identities=19%  Similarity=0.534  Sum_probs=33.1

Q ss_pred             CCCcEEEEcCcHHHHHHHHHHHHcCCCCCcEEEEcCCCC
Q 012165           50 ENREFVIVGGGNAAGYAARTFVEHGMADGRLCIVSKEAY   88 (469)
Q Consensus        50 ~~~~vvIIGgG~AGl~aA~~L~~~g~~~~~V~vie~~~~   88 (469)
                      ...+|+|||+|-.|..+|..|++.|.  ++|+|+|.+..
T Consensus       325 ~~arVLIVGaGGLGs~vA~~La~aGV--G~ItLvD~D~V  361 (615)
T 4gsl_A          325 KNTKVLLLGAGTLGCYVSRALIAWGV--RKITFVDNGTV  361 (615)
T ss_dssp             HTCEEEEECCSHHHHHHHHHHHHTTC--CEEEEECCCBC
T ss_pred             hCCeEEEECCCHHHHHHHHHHHHcCC--CEEEEEcCCCC
Confidence            45789999999999999999999997  49999998764

>3vtf_A UDP-glucose 6-dehydrogenase; two discrete alpha/beta domains, oxidoreducta; HET: UPG; 2.00A {Pyrobaculum islandicum}

Probab=83.24  E-value=1.4  Score=43.34  Aligned_cols=39  Identities=15%  Similarity=0.113  Sum_probs=33.6

Q ss_pred             cCCCCCCcEEEEcCcHHHHHHHHHHHHcCCCCCcEEEEcCCC
Q 012165           46 SFANENREFVIVGGGNAAGYAARTFVEHGMADGRLCIVSKEA   87 (469)
Q Consensus        46 ~~~~~~~~vvIIGgG~AGl~aA~~L~~~g~~~~~V~vie~~~   87 (469)
                      |..+.+.+|.|||.|.-||..|..|++.|+   +|+-+|-++
T Consensus        16 p~~~~m~~IaViGlGYVGLp~A~~~A~~G~---~V~g~Did~   54 (444)
T 3vtf_A           16 PRGSHMASLSVLGLGYVGVVHAVGFALLGH---RVVGYDVNP   54 (444)
T ss_dssp             CTTCCCCEEEEECCSHHHHHHHHHHHHHTC---EEEEECSCH
T ss_pred             CCCCCCCEEEEEccCHHHHHHHHHHHhCCC---cEEEEECCH
Confidence            444567899999999999999999999998   799998654

>3k5i_A Phosphoribosyl-aminoimidazole carboxylase; purine biosynthesis, ATP-grAsp, lyase; HET: NHE ADP AIR; 2.00A {Aspergillus clavatus} PDB: 3k5h_A*

Probab=83.22  E-value=1.3  Score=43.01  Aligned_cols=37  Identities=11%  Similarity=0.258  Sum_probs=31.9

Q ss_pred             CCCCcEEEEcCcHHHHHHHHHHHHcCCCCCcEEEEcCCCCC
Q 012165           49 NENREFVIVGGGNAAGYAARTFVEHGMADGRLCIVSKEAYA   89 (469)
Q Consensus        49 ~~~~~vvIIGgG~AGl~aA~~L~~~g~~~~~V~vie~~~~~   89 (469)
                      +++++|+|+|||..|...+..+++.|+   ++.+++ .+..
T Consensus        22 m~~~~I~ilGgG~lg~~l~~aa~~lG~---~v~~~d-~~~~   58 (403)
T 3k5i_A           22 WNSRKVGVLGGGQLGRMLVESANRLNI---QVNVLD-ADNS   58 (403)
T ss_dssp             CSCCEEEEECCSHHHHHHHHHHHHHTC---EEEEEE-STTC
T ss_pred             CCCCEEEEECCCHHHHHHHHHHHHCCC---EEEEEE-CCCC
Confidence            456899999999999999999999998   788888 5443

>2iid_A L-amino-acid oxidase; flavoenzyme, FAD binding domain, reaction mechanism, sustrat binding, oxidoreductase; HET: NAG FUC PHE FAD; 1.80A {Calloselasma rhodostoma} SCOP: c.3.1.2 d.16.1.5 PDB: 1f8s_A* 1f8r_A* 1reo_A* 1tdk_A* 1tdn_A* 1tdo_A* 3kve_A* 4e0v_A*

Probab=83.00  E-value=1.1  Score=44.67  Aligned_cols=29  Identities=34%  Similarity=0.497  Sum_probs=26.6

Q ss_pred             cCCeEEEEcCChHHHHHHHHHHhCCCeEe
Q 012165          206 KAKKVVVVGGGYIGMEVAAAAVGWKLDTT  234 (469)
Q Consensus       206 ~~~~vvVvG~G~~g~e~A~~l~~~g~~v~  234 (469)
                      ..++|+|||+|.+|+.+|..|.+.|.+|+
T Consensus        32 ~~~~v~IiGaG~~Gl~aA~~l~~~g~~v~   60 (498)
T 2iid_A           32 NPKHVVIVGAGMAGLSAAYVLAGAGHQVT   60 (498)
T ss_dssp             SCCEEEEECCBHHHHHHHHHHHHHTCEEE
T ss_pred             CCCCEEEECCCHHHHHHHHHHHhCCCeEE
Confidence            35789999999999999999999999887

>3g17_A Similar to 2-dehydropantoate 2-reductase; structural genomics, putative 2-dehydropantoate 2-reductase, protein structure initiative; 2.30A {Staphylococcus aureus subsp}

Probab=82.98  E-value=0.96  Score=41.86  Aligned_cols=32  Identities=13%  Similarity=0.182  Sum_probs=28.7

Q ss_pred             CcEEEEcCcHHHHHHHHHHHHcCCCCCcEEEEcCC
Q 012165           52 REFVIVGGGNAAGYAARTFVEHGMADGRLCIVSKE   86 (469)
Q Consensus        52 ~~vvIIGgG~AGl~aA~~L~~~g~~~~~V~vie~~   86 (469)
                      .+|.|||+|.-|.+.|..|.+.|+   +|+++++.
T Consensus         3 mkI~iiGaGa~G~~~a~~L~~~g~---~V~~~~r~   34 (294)
T 3g17_A            3 LSVAIIGPGAVGTTIAYELQQSLP---HTTLIGRH   34 (294)
T ss_dssp             CCEEEECCSHHHHHHHHHHHHHCT---TCEEEESS
T ss_pred             cEEEEECCCHHHHHHHHHHHHCCC---eEEEEEec
Confidence            479999999999999999999986   79998865

>3ax6_A Phosphoribosylaminoimidazole carboxylase, ATPase; structural genomics, riken structural genomics/proteomics in RSGI, ATP grAsp, ATP binding; HET: ADP; 2.20A {Thermotoga maritima}

Probab=82.96  E-value=1.3  Score=42.49  Aligned_cols=35  Identities=14%  Similarity=0.307  Sum_probs=30.6

Q ss_pred             CcEEEEcCcHHHHHHHHHHHHcCCCCCcEEEEcCCCCC
Q 012165           52 REFVIVGGGNAAGYAARTFVEHGMADGRLCIVSKEAYA   89 (469)
Q Consensus        52 ~~vvIIGgG~AGl~aA~~L~~~g~~~~~V~vie~~~~~   89 (469)
                      ++|+|||+|..|...+..+++.|+   ++.+++..+..
T Consensus         2 ~~Ililg~g~~g~~~~~a~~~~G~---~v~~~~~~~~~   36 (380)
T 3ax6_A            2 KKIGIIGGGQLGKMMTLEAKKMGF---YVIVLDPTPRS   36 (380)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHTTC---EEEEEESSTTC
T ss_pred             CEEEEECCCHHHHHHHHHHHHCCC---EEEEEeCCCCC
Confidence            689999999999999999999988   78888876543

>3doj_A AT3G25530, dehydrogenase-like protein; gamma-hydroxybutyrate dehydrogenase, 4-hydroxybutyrate dehydrogenase; 2.10A {Arabidopsis thaliana}

Probab=82.80  E-value=1.4  Score=41.13  Aligned_cols=35  Identities=11%  Similarity=0.237  Sum_probs=30.2

Q ss_pred             CCCCcEEEEcCcHHHHHHHHHHHHcCCCCCcEEEEcCC
Q 012165           49 NENREFVIVGGGNAAGYAARTFVEHGMADGRLCIVSKE   86 (469)
Q Consensus        49 ~~~~~vvIIGgG~AGl~aA~~L~~~g~~~~~V~vie~~   86 (469)
                      ..+.+|.|||.|.-|...|..|++.|+   +|+++++.
T Consensus        19 ~~m~~I~iIG~G~mG~~~A~~l~~~G~---~V~~~dr~   53 (310)
T 3doj_A           19 SHMMEVGFLGLGIMGKAMSMNLLKNGF---KVTVWNRT   53 (310)
T ss_dssp             CCSCEEEEECCSHHHHHHHHHHHHTTC---EEEEECSS
T ss_pred             ccCCEEEEECccHHHHHHHHHHHHCCC---eEEEEeCC
Confidence            345689999999999999999999987   78887754

>3k7m_X 6-hydroxy-L-nicotine oxidase; enantiomeric substrates, flavoenzymes, nicotine degradation, oxidoreductase; HET: FAD GP7; 1.95A {Arthrobacter nicotinovorans} PDB: 3k7q_X* 3ng7_X* 3ngc_X* 3nh3_X* 3nho_X* 3nk0_X* 3nk1_X* 3nk2_X* 3nn0_X* 3nn6_X* 3k7t_A*

Probab=82.78  E-value=1.3  Score=43.15  Aligned_cols=35  Identities=23%  Similarity=0.370  Sum_probs=31.8

Q ss_pred             CCcEEEEcCcHHHHHHHHHHHHcCCCCCcEEEEcCCCC
Q 012165           51 NREFVIVGGGNAAGYAARTFVEHGMADGRLCIVSKEAY   88 (469)
Q Consensus        51 ~~~vvIIGgG~AGl~aA~~L~~~g~~~~~V~vie~~~~   88 (469)
                      ++||+|||||++|++||..|++.|.   +|+|+|+++.
T Consensus         1 ~~dVvVIGaG~aGl~aA~~L~~~G~---~V~vlE~~~~   35 (431)
T 3k7m_X            1 MYDAIVVGGGFSGLKAARDLTNAGK---KVLLLEGGER   35 (431)
T ss_dssp             CEEEEEECCBHHHHHHHHHHHHTTC---CEEEECSSSS
T ss_pred             CCCEEEECCcHHHHHHHHHHHHcCC---eEEEEecCCC
Confidence            3699999999999999999999987   7999998654

>3nks_A Protoporphyrinogen oxidase; FAD containing protein, PPO, variegate porphyria disease, VP oxidoreductase-oxidoreductase inhibitor complex; HET: ACJ FAD; 1.90A {Homo sapiens}

Probab=82.77  E-value=1.3  Score=43.98  Aligned_cols=40  Identities=18%  Similarity=0.212  Sum_probs=34.7

Q ss_pred             CCcEEEEcCcHHHHHHHHHHHHcCCCCCcEEEEcCCCCCCC
Q 012165           51 NREFVIVGGGNAAGYAARTFVEHGMADGRLCIVSKEAYAPY   91 (469)
Q Consensus        51 ~~~vvIIGgG~AGl~aA~~L~~~g~~~~~V~vie~~~~~~~   91 (469)
                      ++||+|||||++||+||.+|++.|+ ..+|+|+|+++..+.
T Consensus         2 ~~dVvVIGaGiaGLsaA~~L~~~G~-~~~V~vlEa~~~~GG   41 (477)
T 3nks_A            2 GRTVVVLGGGISGLAASYHLSRAPC-PPKVVLVESSERLGG   41 (477)
T ss_dssp             CCEEEEECCBHHHHHHHHHHHTSSS-CCEEEEECSSSSSBT
T ss_pred             CceEEEECCcHHHHHHHHHHHhCCC-CCcEEEEeCCCCCCC
Confidence            4799999999999999999999986 457999999876543

>2i6t_A Ubiquitin-conjugating enzyme E2-like isoform A; L-lactate dehydrogenase, oxidoreductase, ubiquitin-protein L unknown function; 2.10A {Homo sapiens} PDB: 3dl2_A

Probab=82.69  E-value=1.4  Score=41.01  Aligned_cols=36  Identities=19%  Similarity=0.381  Sum_probs=30.1

Q ss_pred             CCcEEEEcCcHHHHHHHHHHHHcCCCCCcEEEEcCCC
Q 012165           51 NREFVIVGGGNAAGYAARTFVEHGMADGRLCIVSKEA   87 (469)
Q Consensus        51 ~~~vvIIGgG~AGl~aA~~L~~~g~~~~~V~vie~~~   87 (469)
                      +.+|.|||+|..|...|..|...++ -.+|+|+|.+.
T Consensus        14 ~~kV~ViGaG~vG~~~a~~l~~~g~-~~ev~L~Di~~   49 (303)
T 2i6t_A           14 VNKITVVGGGELGIACTLAISAKGI-ADRLVLLDLSE   49 (303)
T ss_dssp             CCEEEEECCSHHHHHHHHHHHHHTC-CSEEEEECCC-
T ss_pred             CCEEEEECCCHHHHHHHHHHHhcCC-CCEEEEEcCCc
Confidence            3689999999999999999998886 55799988653

>1nyt_A Shikimate 5-dehydrogenase; alpha/beta domains, WIDE cleft separation, oxidoreductase; HET: NAP; 1.50A {Escherichia coli} SCOP: c.2.1.7 c.58.1.5

Probab=82.66  E-value=1.4  Score=40.17  Aligned_cols=34  Identities=12%  Similarity=0.254  Sum_probs=29.6

Q ss_pred             CCCcEEEEcCcHHHHHHHHHHHHcCCCCCcEEEEcCC
Q 012165           50 ENREFVIVGGGNAAGYAARTFVEHGMADGRLCIVSKE   86 (469)
Q Consensus        50 ~~~~vvIIGgG~AGl~aA~~L~~~g~~~~~V~vie~~   86 (469)
                      ..++++|+|+|-.|.++|..|.+.|.   +|+++++.
T Consensus       118 ~~k~vlViGaGg~g~a~a~~L~~~G~---~V~v~~R~  151 (271)
T 1nyt_A          118 PGLRILLIGAGGASRGVLLPLLSLDC---AVTITNRT  151 (271)
T ss_dssp             TTCEEEEECCSHHHHHHHHHHHHTTC---EEEEECSS
T ss_pred             CCCEEEEECCcHHHHHHHHHHHHcCC---EEEEEECC
Confidence            45789999999999999999999985   79988754

>1ez4_A Lactate dehydrogenase; rossmann fold, oxidoreductase; HET: NAD; 2.30A {Lactobacillus pentosus} SCOP: c.2.1.5 d.162.1.1

Probab=82.54  E-value=1.3  Score=41.46  Aligned_cols=35  Identities=23%  Similarity=0.407  Sum_probs=29.9

Q ss_pred             CCcEEEEcCcHHHHHHHHHHHHcCCCCCcEEEEcCC
Q 012165           51 NREFVIVGGGNAAGYAARTFVEHGMADGRLCIVSKE   86 (469)
Q Consensus        51 ~~~vvIIGgG~AGl~aA~~L~~~g~~~~~V~vie~~   86 (469)
                      +.+|+|||+|..|.+.+..|...+. -.+|.++|..
T Consensus         5 ~~KI~IiGaG~vG~~~a~~l~~~~~-~~el~L~Di~   39 (318)
T 1ez4_A            5 HQKVVLVGDGAVGSSYAFAMAQQGI-AEEFVIVDVV   39 (318)
T ss_dssp             BCEEEEECCSHHHHHHHHHHHHHTC-CSEEEEECSS
T ss_pred             CCEEEEECCCHHHHHHHHHHHcCCC-CCEEEEEeCC
Confidence            3689999999999999999998876 4578898853

>3g5s_A Methylenetetrahydrofolate--tRNA-(uracil-5-)- methyltransferase TRMFO; tRNA methyltransferase FAD folate, FAD, flavoprotein; HET: MSE FAD GSH; 1.05A {Thermus thermophilus} PDB: 3g5q_A* 3g5r_A*

Probab=82.50  E-value=1  Score=43.53  Aligned_cols=27  Identities=30%  Similarity=0.394  Sum_probs=25.1

Q ss_pred             CeEEEEcCChHHHHHHHHHHhCCCeEe
Q 012165          208 KKVVVVGGGYIGMEVAAAAVGWKLDTT  234 (469)
Q Consensus       208 ~~vvVvG~G~~g~e~A~~l~~~g~~v~  234 (469)
                      ++|+|||+|..|++.|..+++.|.+|.
T Consensus         2 ~dViVIGgG~AG~~AA~~la~~G~~V~   28 (443)
T 3g5s_A            2 ERVNVVGAGLAGSEAAWTLLRLGVPVR   28 (443)
T ss_dssp             CCEEEECCSHHHHHHHHHHHHTTCCEE
T ss_pred             CCEEEECchHHHHHHHHHHHHCCCcEE
Confidence            469999999999999999999999886

>3vku_A L-LDH, L-lactate dehydrogenase; rossmann fold, NADH binding, oxidoreductase; 1.96A {Lactobacillus casei} PDB: 2zqz_A 2zqy_A 3vkv_A* 1llc_A*

Probab=82.42  E-value=1.6  Score=41.10  Aligned_cols=37  Identities=22%  Similarity=0.381  Sum_probs=31.2

Q ss_pred             CCCCcEEEEcCcHHHHHHHHHHHHcCCCCCcEEEEcCC
Q 012165           49 NENREFVIVGGGNAAGYAARTFVEHGMADGRLCIVSKE   86 (469)
Q Consensus        49 ~~~~~vvIIGgG~AGl~aA~~L~~~g~~~~~V~vie~~   86 (469)
                      ....+|.|||+|..|.++|..|+..+. -.++.++|..
T Consensus         7 ~~~~kV~ViGaG~vG~~~a~~l~~~~~-~~el~l~D~~   43 (326)
T 3vku_A            7 KDHQKVILVGDGAVGSSYAYAMVLQGI-AQEIGIVDIF   43 (326)
T ss_dssp             CCCCEEEEECCSHHHHHHHHHHHHHTC-CSEEEEECSC
T ss_pred             CCCCEEEEECCCHHHHHHHHHHHhCCC-CCeEEEEeCC
Confidence            345689999999999999999999886 4589998864

>3pvc_A TRNA 5-methylaminomethyl-2-thiouridine biosynthes bifunctional protein MNMC; structural genomics, PSI-biology; HET: FAD; 2.31A {Yersinia pestis} PDB: 3sgl_A*

Probab=82.35  E-value=1.7  Score=45.63  Aligned_cols=47  Identities=17%  Similarity=0.253  Sum_probs=36.7

Q ss_pred             HHHHCCcEEEeCCcEEEEeCCCc--EEEeCCCe-EEEeccEEeccCCCCC
Q 012165          129 WYKEKGIEMIYQDPVTSIDIEKQ--TLITNSGK-LLKYGSLIVATGCTAS  175 (469)
Q Consensus       129 ~~~~~~i~~~~~~~v~~id~~~~--~v~~~~g~-~~~yd~lVlAtG~~~~  175 (469)
                      .+++.|++++.+++|+++..++.  .|.+.+|. ++.+|+||+|||....
T Consensus       421 ~a~~~Gv~i~~~t~V~~l~~~~~~v~V~t~~G~~~i~Ad~VVlAtG~~s~  470 (689)
T 3pvc_A          421 LAQQNGMTCHYQHELQRLKRIDSQWQLTFGQSQAAKHHATVILATGHRLP  470 (689)
T ss_dssp             HHHHTTCEEEESCCEEEEEECSSSEEEEEC-CCCCEEESEEEECCGGGTT
T ss_pred             HHHhCCCEEEeCCeEeEEEEeCCeEEEEeCCCcEEEECCEEEECCCcchh
Confidence            34567999999999999976543  56777776 7999999999997643

>3c24_A Putative oxidoreductase; YP_511008.1, structural genomics, center for structural genomics, JCSG, protein structure INI PSI-2; HET: MSE; 1.62A {Jannaschia SP}

Probab=82.32  E-value=1.7  Score=39.81  Aligned_cols=33  Identities=15%  Similarity=0.320  Sum_probs=28.6

Q ss_pred             CCcEEEEcC-cHHHHHHHHHHHHcCCCCCcEEEEcCC
Q 012165           51 NREFVIVGG-GNAAGYAARTFVEHGMADGRLCIVSKE   86 (469)
Q Consensus        51 ~~~vvIIGg-G~AGl~aA~~L~~~g~~~~~V~vie~~   86 (469)
                      +.+|.|||+ |.-|...|..|.+.|+   +|+++++.
T Consensus        11 mm~I~iIG~tG~mG~~la~~l~~~g~---~V~~~~r~   44 (286)
T 3c24_A           11 PKTVAILGAGGKMGARITRKIHDSAH---HLAAIEIA   44 (286)
T ss_dssp             CCEEEEETTTSHHHHHHHHHHHHSSS---EEEEECCS
T ss_pred             CCEEEEECCCCHHHHHHHHHHHhCCC---EEEEEECC
Confidence            458999999 9999999999999987   78887643

>3oj0_A Glutr, glutamyl-tRNA reductase; structural genomics, PSI-2, protein structure initiative, MI center for structural genomics, MCSG; HET: MSE SO4; 1.65A {Thermoplasma volcanium}

Probab=82.30  E-value=0.51  Score=38.42  Aligned_cols=33  Identities=18%  Similarity=0.327  Sum_probs=28.3

Q ss_pred             CCcEEEEcCcHHHHHHHHHHHHcCCCCCcEEEEcCC
Q 012165           51 NREFVIVGGGNAAGYAARTFVEHGMADGRLCIVSKE   86 (469)
Q Consensus        51 ~~~vvIIGgG~AGl~aA~~L~~~g~~~~~V~vie~~   86 (469)
                      .++|+|||+|..|...+..|.+.|.   +|+++++.
T Consensus        21 ~~~v~iiG~G~iG~~~a~~l~~~g~---~v~v~~r~   53 (144)
T 3oj0_A           21 GNKILLVGNGMLASEIAPYFSYPQY---KVTVAGRN   53 (144)
T ss_dssp             CCEEEEECCSHHHHHHGGGCCTTTC---EEEEEESC
T ss_pred             CCEEEEECCCHHHHHHHHHHHhCCC---EEEEEcCC
Confidence            5689999999999999999988775   58888754

>3jyo_A Quinate/shikimate dehydrogenase; enzyme-cofactor complex, amino-acid biosynthesis, aromatic A biosynthesis, NAD, oxidoreductase; HET: NAD; 1.00A {Corynebacterium glutamicum} PDB: 3jyp_A* 3jyq_A* 2nlo_A

Probab=82.25  E-value=1.6  Score=40.21  Aligned_cols=36  Identities=25%  Similarity=0.417  Sum_probs=30.4

Q ss_pred             CCCCcEEEEcCcHHHHHHHHHHHHcCCCCCcEEEEcCC
Q 012165           49 NENREFVIVGGGNAAGYAARTFVEHGMADGRLCIVSKE   86 (469)
Q Consensus        49 ~~~~~vvIIGgG~AGl~aA~~L~~~g~~~~~V~vie~~   86 (469)
                      ...++++|+|+|-+|-+++..|.+.|..  +|+++++.
T Consensus       125 l~~k~vlVlGaGG~g~aia~~L~~~G~~--~v~i~~R~  160 (283)
T 3jyo_A          125 AKLDSVVQVGAGGVGNAVAYALVTHGVQ--KLQVADLD  160 (283)
T ss_dssp             CCCSEEEEECCSHHHHHHHHHHHHTTCS--EEEEECSS
T ss_pred             cCCCEEEEECCcHHHHHHHHHHHHCCCC--EEEEEECC
Confidence            4567999999999999999999999863  68888654

>2v6b_A L-LDH, L-lactate dehydrogenase; oxidoreductase, radioresistance, NAD, cytoplasm, mesophilic, glycolysis; 2.50A {Deinococcus radiodurans}

Probab=82.23  E-value=1.5  Score=40.85  Aligned_cols=34  Identities=26%  Similarity=0.363  Sum_probs=29.7

Q ss_pred             cEEEEcCcHHHHHHHHHHHHcCCCCCcEEEEcCCC
Q 012165           53 EFVIVGGGNAAGYAARTFVEHGMADGRLCIVSKEA   87 (469)
Q Consensus        53 ~vvIIGgG~AGl~aA~~L~~~g~~~~~V~vie~~~   87 (469)
                      +|+|||+|..|.+.|..|+..|+ ..+|+++|.+.
T Consensus         2 kI~VIGaG~vG~~la~~la~~g~-~~eV~L~D~~~   35 (304)
T 2v6b_A            2 KVGVVGTGFVGSTAAFALVLRGS-CSELVLVDRDE   35 (304)
T ss_dssp             EEEEECCSHHHHHHHHHHHHTTC-CSEEEEECSSH
T ss_pred             EEEEECCCHHHHHHHHHHHhCCC-CCEEEEEeCCH
Confidence            69999999999999999999886 45799998653

>2uyy_A N-PAC protein; long-chain dehydrogenase, cytokine; HET: NA7; 2.5A {Homo sapiens}

Probab=82.23  E-value=1.7  Score=40.57  Aligned_cols=33  Identities=9%  Similarity=0.227  Sum_probs=28.6

Q ss_pred             CCcEEEEcCcHHHHHHHHHHHHcCCCCCcEEEEcCC
Q 012165           51 NREFVIVGGGNAAGYAARTFVEHGMADGRLCIVSKE   86 (469)
Q Consensus        51 ~~~vvIIGgG~AGl~aA~~L~~~g~~~~~V~vie~~   86 (469)
                      +.+|.|||+|.-|...|..|.+.|+   +|+++++.
T Consensus        30 ~~~I~iIG~G~mG~~~a~~l~~~g~---~V~~~~~~   62 (316)
T 2uyy_A           30 DKKIGFLGLGLMGSGIVSNLLKMGH---TVTVWNRT   62 (316)
T ss_dssp             SSCEEEECCSHHHHHHHHHHHHTTC---CEEEECSS
T ss_pred             CCeEEEEcccHHHHHHHHHHHhCCC---EEEEEeCC
Confidence            4679999999999999999999887   68887654

>1lss_A TRK system potassium uptake protein TRKA homolog; KTN domain, NAD, RCK domain, potassium transport, potassium channel, KTRA; HET: NAD; 2.30A {Methanocaldococcus jannaschii} SCOP: c.2.1.9

Probab=82.06  E-value=2.4  Score=33.67  Aligned_cols=28  Identities=18%  Similarity=0.266  Sum_probs=25.2

Q ss_pred             CCeEEEEcCChHHHHHHHHHHhCCCeEe
Q 012165          207 AKKVVVVGGGYIGMEVAAAAVGWKLDTT  234 (469)
Q Consensus       207 ~~~vvVvG~G~~g~e~A~~l~~~g~~v~  234 (469)
                      +.+++|+|+|.+|..++..|.+.|.++.
T Consensus         4 ~m~i~IiG~G~iG~~~a~~L~~~g~~v~   31 (140)
T 1lss_A            4 GMYIIIAGIGRVGYTLAKSLSEKGHDIV   31 (140)
T ss_dssp             -CEEEEECCSHHHHHHHHHHHHTTCEEE
T ss_pred             CCEEEEECCCHHHHHHHHHHHhCCCeEE
Confidence            3589999999999999999999998887

>3r6d_A NAD-dependent epimerase/dehydratase; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, veillo parvula; HET: MLZ; 1.25A {Veillonella parvula dsm 2008} PDB: 4hng_A 4hnh_A* 3r14_A*

Probab=82.04  E-value=1.7  Score=37.92  Aligned_cols=34  Identities=18%  Similarity=0.309  Sum_probs=28.5

Q ss_pred             CCCcEEEEcC-cHHHHHHHHHHH-HcCCCCCcEEEEcCC
Q 012165           50 ENREFVIVGG-GNAAGYAARTFV-EHGMADGRLCIVSKE   86 (469)
Q Consensus        50 ~~~~vvIIGg-G~AGl~aA~~L~-~~g~~~~~V~vie~~   86 (469)
                      +++.|+|.|| |.-|...+..|. +.|+   +|+++++.
T Consensus         4 mmk~vlVtGasg~iG~~~~~~l~~~~g~---~V~~~~r~   39 (221)
T 3r6d_A            4 MYXYITILGAAGQIAQXLTATLLTYTDM---HITLYGRQ   39 (221)
T ss_dssp             SCSEEEEESTTSHHHHHHHHHHHHHCCC---EEEEEESS
T ss_pred             eEEEEEEEeCCcHHHHHHHHHHHhcCCc---eEEEEecC
Confidence            3467999995 899999999999 7887   78888765

>2ewd_A Lactate dehydrogenase,; protein-substrate_cofactor analog complex, oxidoreductase; HET: A3D; 2.00A {Cryptosporidium parvum} PDB: 2frm_A 2fn7_A* 2fnz_A* 2fm3_A

Probab=82.03  E-value=1.6  Score=40.77  Aligned_cols=35  Identities=17%  Similarity=0.370  Sum_probs=29.6

Q ss_pred             CCcEEEEcCcHHHHHHHHHHHHcCCCCCcEEEEcCCC
Q 012165           51 NREFVIVGGGNAAGYAARTFVEHGMADGRLCIVSKEA   87 (469)
Q Consensus        51 ~~~vvIIGgG~AGl~aA~~L~~~g~~~~~V~vie~~~   87 (469)
                      +.+|.|||+|.-|.+.|..|++.|+.  +|+++|.++
T Consensus         4 ~~kI~VIGaG~~G~~ia~~la~~g~~--~V~l~D~~~   38 (317)
T 2ewd_A            4 RRKIAVIGSGQIGGNIAYIVGKDNLA--DVVLFDIAE   38 (317)
T ss_dssp             CCEEEEECCSHHHHHHHHHHHHHTCC--EEEEECSSS
T ss_pred             CCEEEEECCCHHHHHHHHHHHhCCCc--eEEEEeCCc
Confidence            35899999999999999999998862  599988653

>4g65_A TRK system potassium uptake protein TRKA; structural genomics, center for structural genomics of infec diseases, csgid, niaid; HET: MSE; 2.09A {Vibrio vulnificus}

Probab=82.01  E-value=0.48  Score=47.12  Aligned_cols=32  Identities=28%  Similarity=0.547  Sum_probs=29.6

Q ss_pred             cEEEEcCcHHHHHHHHHHHHcCCCCCcEEEEcCCC
Q 012165           53 EFVIVGGGNAAGYAARTFVEHGMADGRLCIVSKEA   87 (469)
Q Consensus        53 ~vvIIGgG~AGl~aA~~L~~~g~~~~~V~vie~~~   87 (469)
                      +|+|+|+|--|.+.|..|.+.|+   +|++||+++
T Consensus         5 ~iiI~G~G~vG~~la~~L~~~~~---~v~vId~d~   36 (461)
T 4g65_A            5 KIIILGAGQVGGTLAENLVGENN---DITIVDKDG   36 (461)
T ss_dssp             EEEEECCSHHHHHHHHHTCSTTE---EEEEEESCH
T ss_pred             EEEEECCCHHHHHHHHHHHHCCC---CEEEEECCH
Confidence            69999999999999999998887   799999875

>2zqz_A L-LDH, L-lactate dehydrogenase; oxidoreductase, rossmann fold, cytoplasm, glycolysis, NAD, phosphoprotein; 2.50A {Lactobacillus casei} PDB: 2zqy_A 3vkv_A* 1llc_A*

Probab=81.94  E-value=1.6  Score=41.11  Aligned_cols=37  Identities=22%  Similarity=0.381  Sum_probs=30.7

Q ss_pred             CCCCcEEEEcCcHHHHHHHHHHHHcCCCCCcEEEEcCC
Q 012165           49 NENREFVIVGGGNAAGYAARTFVEHGMADGRLCIVSKE   86 (469)
Q Consensus        49 ~~~~~vvIIGgG~AGl~aA~~L~~~g~~~~~V~vie~~   86 (469)
                      +++.+|+|||+|..|.+.+..|...+. -.+|.++|..
T Consensus         7 ~~~~KI~IiGaG~vG~~la~~l~~~~~-~~el~L~Di~   43 (326)
T 2zqz_A            7 KDHQKVILVGDGAVGSSYAYAMVLQGI-AQEIGIVDIF   43 (326)
T ss_dssp             CCCCEEEEECCSHHHHHHHHHHHHHTC-CSEEEEECSC
T ss_pred             CCCCEEEEECCCHHHHHHHHHHHcCCC-CCEEEEEeCC
Confidence            344689999999999999999998875 4578888853

>3vps_A TUNA, NAD-dependent epimerase/dehydratase; tunicamycins, biosynthesis, EXO-glycal, rossman transferase; HET: UD1 NAD; 1.90A {Streptomyces chartreusis}

Probab=81.93  E-value=1.6  Score=40.36  Aligned_cols=36  Identities=25%  Similarity=0.427  Sum_probs=30.9

Q ss_pred             CCCcEEEEcC-cHHHHHHHHHHHHcCCCCCcEEEEcCCCC
Q 012165           50 ENREFVIVGG-GNAAGYAARTFVEHGMADGRLCIVSKEAY   88 (469)
Q Consensus        50 ~~~~vvIIGg-G~AGl~aA~~L~~~g~~~~~V~vie~~~~   88 (469)
                      ++++|+|.|| |+-|...+..|.+.|+   +|+++++.+.
T Consensus         6 ~~~~vlVtGatG~iG~~l~~~L~~~g~---~V~~~~r~~~   42 (321)
T 3vps_A            6 LKHRILITGGAGFIGGHLARALVASGE---EVTVLDDLRV   42 (321)
T ss_dssp             -CCEEEEETTTSHHHHHHHHHHHHTTC---CEEEECCCSS
T ss_pred             CCCeEEEECCCChHHHHHHHHHHHCCC---EEEEEecCCc
Confidence            4578999999 9999999999999987   7999887654

>1tt5_B Ubiquitin-activating enzyme E1C isoform 1; cell cycle, ligase; 2.60A {Homo sapiens} SCOP: c.111.1.2 PDB: 3dbl_B 3dbr_B 3dbh_B 3gzn_B* 1yov_B 1r4m_B 1r4n_B*

Probab=81.84  E-value=1.4  Score=43.14  Aligned_cols=37  Identities=8%  Similarity=0.335  Sum_probs=32.6

Q ss_pred             CCCcEEEEcCcHHHHHHHHHHHHcCCCCCcEEEEcCCCC
Q 012165           50 ENREFVIVGGGNAAGYAARTFVEHGMADGRLCIVSKEAY   88 (469)
Q Consensus        50 ~~~~vvIIGgG~AGl~aA~~L~~~g~~~~~V~vie~~~~   88 (469)
                      ...+|+|||+|-.|..+|..|++.|.  ++|+|+|.+..
T Consensus        39 ~~~~VlvvG~GGlGs~va~~La~aGv--g~i~ivD~D~V   75 (434)
T 1tt5_B           39 DTCKVLVIGAGGLGCELLKNLALSGF--RQIHVIDMDTI   75 (434)
T ss_dssp             HTCCEEEECSSTHHHHHHHHHHHTTC--CCEEEEECCBC
T ss_pred             cCCEEEEECcCHHHHHHHHHHHHcCC--CEEEEEcCCEe
Confidence            35789999999999999999999997  48999997753

>1hdo_A Biliverdin IX beta reductase; foetal metabolism, HAEM degradation, flavin reductase, diaphorase, green HAEM binding protein; HET: NAP; 1.15A {Homo sapiens} SCOP: c.2.1.2 PDB: 1he2_A* 1he3_A* 1he4_A* 1he5_A*

Probab=81.83  E-value=1.6  Score=37.32  Aligned_cols=33  Identities=15%  Similarity=0.381  Sum_probs=29.1

Q ss_pred             CcEEEEcC-cHHHHHHHHHHHHcCCCCCcEEEEcCCC
Q 012165           52 REFVIVGG-GNAAGYAARTFVEHGMADGRLCIVSKEA   87 (469)
Q Consensus        52 ~~vvIIGg-G~AGl~aA~~L~~~g~~~~~V~vie~~~   87 (469)
                      ++|+|+|| |.-|...+..|.+.|+   +|+++++.+
T Consensus         4 ~~ilVtGatG~iG~~l~~~l~~~g~---~V~~~~r~~   37 (206)
T 1hdo_A            4 KKIAIFGATGQTGLTTLAQAVQAGY---EVTVLVRDS   37 (206)
T ss_dssp             CEEEEESTTSHHHHHHHHHHHHTTC---EEEEEESCG
T ss_pred             CEEEEEcCCcHHHHHHHHHHHHCCC---eEEEEEeCh
Confidence            57999999 9999999999999987   798888654

>3qha_A Putative oxidoreductase; seattle structural genomics center for infectious disease, S mycobacterium avium 104, rossmann fold; 2.25A {Mycobacterium avium}

Probab=81.66  E-value=1.1  Score=41.56  Aligned_cols=34  Identities=15%  Similarity=0.115  Sum_probs=29.7

Q ss_pred             CCcEEEEcCcHHHHHHHHHHHHcCCCCCcEEEEcCCC
Q 012165           51 NREFVIVGGGNAAGYAARTFVEHGMADGRLCIVSKEA   87 (469)
Q Consensus        51 ~~~vvIIGgG~AGl~aA~~L~~~g~~~~~V~vie~~~   87 (469)
                      +.+|.|||.|.-|...|..|++.|+   +|++++.++
T Consensus        15 ~~~I~vIG~G~mG~~~A~~l~~~G~---~V~~~dr~~   48 (296)
T 3qha_A           15 QLKLGYIGLGNMGAPMATRMTEWPG---GVTVYDIRI   48 (296)
T ss_dssp             CCCEEEECCSTTHHHHHHHHTTSTT---CEEEECSST
T ss_pred             CCeEEEECcCHHHHHHHHHHHHCCC---eEEEEeCCH
Confidence            4689999999999999999999987   698887553

>4aj2_A L-lactate dehydrogenase A chain; oxidoreductase-inhibitor complex, fragment-based LEAD genera inhibitors; HET: 52C; 1.75A {Rattus norvegicus} PDB: 4aj1_A* 4aje_A* 4ajh_A* 4aji_A* 4ajj_A* 4ajk_A* 4ajl_A* 4ajn_A* 4ajo_A* 4al4_A* 4aj4_A* 4ajp_A* 1i10_A* 3h3f_A* 9ldt_A* 9ldb_A* 1t2f_A* 1i0z_A* 5ldh_A* 1ldm_A* ...

Probab=81.64  E-value=2  Score=40.51  Aligned_cols=38  Identities=16%  Similarity=0.218  Sum_probs=31.2

Q ss_pred             CCCCCcEEEEcCcHHHHHHHHHHHHcCCCCCcEEEEcCC
Q 012165           48 ANENREFVIVGGGNAAGYAARTFVEHGMADGRLCIVSKE   86 (469)
Q Consensus        48 ~~~~~~vvIIGgG~AGl~aA~~L~~~g~~~~~V~vie~~   86 (469)
                      .....+|.|||+|..|.+.|..|...+. -.+++++|..
T Consensus        16 ~~~~~kV~ViGaG~vG~~~a~~l~~~~~-~~el~L~Di~   53 (331)
T 4aj2_A           16 QVPQNKITVVGVGAVGMACAISILMKDL-ADELALVDVI   53 (331)
T ss_dssp             -CCSSEEEEECCSHHHHHHHHHHHHTTC-CSEEEEECSC
T ss_pred             cCCCCEEEEECCCHHHHHHHHHHHhCCC-CceEEEEeCC
Confidence            3455789999999999999999999876 4579998854

>1ks9_A KPA reductase;, 2-dehydropantoate 2-reductase; PANE, APBA, ketopantoate reductase, rossman fold, monomer, APO, oxidoreductase; 1.70A {Escherichia coli} SCOP: a.100.1.7 c.2.1.6 PDB: 1yon_A* 1yjq_A* 2ofp_A*

Probab=81.61  E-value=1.5  Score=40.04  Aligned_cols=32  Identities=9%  Similarity=0.141  Sum_probs=28.8

Q ss_pred             cEEEEcCcHHHHHHHHHHHHcCCCCCcEEEEcCCC
Q 012165           53 EFVIVGGGNAAGYAARTFVEHGMADGRLCIVSKEA   87 (469)
Q Consensus        53 ~vvIIGgG~AGl~aA~~L~~~g~~~~~V~vie~~~   87 (469)
                      +|.|||+|.-|...|..|.+.|+   +|+++++++
T Consensus         2 ~i~iiG~G~~G~~~a~~l~~~g~---~V~~~~r~~   33 (291)
T 1ks9_A            2 KITVLGCGALGQLWLTALCKQGH---EVQGWLRVP   33 (291)
T ss_dssp             EEEEECCSHHHHHHHHHHHHTTC---EEEEECSSC
T ss_pred             eEEEECcCHHHHHHHHHHHhCCC---CEEEEEcCc
Confidence            69999999999999999999987   799988654

>3i6i_A Putative leucoanthocyanidin reductase 1; rossmann fold, short chain dehydrogenase reductase, flavonoi oxidoreductase; HET: NDP; 1.75A {Vitis vinifera} PDB: 3i5m_A 3i52_A* 3i6q_A*

Probab=81.61  E-value=1.5  Score=41.45  Aligned_cols=35  Identities=14%  Similarity=0.265  Sum_probs=29.2

Q ss_pred             CCCcEEEEcC-cHHHHHHHHHHHHcCCCCCcEEEEcCCC
Q 012165           50 ENREFVIVGG-GNAAGYAARTFVEHGMADGRLCIVSKEA   87 (469)
Q Consensus        50 ~~~~vvIIGg-G~AGl~aA~~L~~~g~~~~~V~vie~~~   87 (469)
                      .+++|+|.|| |.-|...+..|.+.|+   +|+++.+.+
T Consensus         9 ~~~~IlVtGatG~iG~~l~~~L~~~g~---~V~~l~R~~   44 (346)
T 3i6i_A            9 PKGRVLIAGATGFIGQFVATASLDAHR---PTYILARPG   44 (346)
T ss_dssp             --CCEEEECTTSHHHHHHHHHHHHTTC---CEEEEECSS
T ss_pred             CCCeEEEECCCcHHHHHHHHHHHHCCC---CEEEEECCC
Confidence            3468999999 9999999999999986   688887654

>2g1u_A Hypothetical protein TM1088A; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: AMP; 1.50A {Thermotoga maritima} PDB: 3l4b_A*

Probab=81.61  E-value=1.6  Score=35.85  Aligned_cols=30  Identities=27%  Similarity=0.350  Sum_probs=27.5

Q ss_pred             hcCCeEEEEcCChHHHHHHHHHHhCCCeEe
Q 012165          205 EKAKKVVVVGGGYIGMEVAAAAVGWKLDTT  234 (469)
Q Consensus       205 ~~~~~vvVvG~G~~g~e~A~~l~~~g~~v~  234 (469)
                      ..+++++|+|+|.+|..++..|.+.|.++.
T Consensus        17 ~~~~~v~IiG~G~iG~~la~~L~~~g~~V~   46 (155)
T 2g1u_A           17 QKSKYIVIFGCGRLGSLIANLASSSGHSVV   46 (155)
T ss_dssp             CCCCEEEEECCSHHHHHHHHHHHHTTCEEE
T ss_pred             cCCCcEEEECCCHHHHHHHHHHHhCCCeEE
Confidence            467899999999999999999999998887

>2dvm_A Malic enzyme, 439AA long hypothetical malate oxidoreductase; NAD, structural genomics, NPPSFA; HET: NAD MES; 1.60A {Pyrococcus horikoshii} PDB: 1ww8_A*

Probab=81.56  E-value=1.3  Score=43.31  Aligned_cols=36  Identities=19%  Similarity=0.288  Sum_probs=30.8

Q ss_pred             CCCCcEEEEcCcHHHHHHHHHHHHcCCCCCcEEEEc
Q 012165           49 NENREFVIVGGGNAAGYAARTFVEHGMADGRLCIVS   84 (469)
Q Consensus        49 ~~~~~vvIIGgG~AGl~aA~~L~~~g~~~~~V~vie   84 (469)
                      ....+++|+|+|-||.+++..|.+.|.+..+|+|++
T Consensus       184 l~~~rvlvlGAGgAg~aia~~L~~~G~~~~~I~vvd  219 (439)
T 2dvm_A          184 ISEITLALFGAGAAGFATLRILTEAGVKPENVRVVE  219 (439)
T ss_dssp             TTTCCEEEECCSHHHHHHHHHHHHTTCCGGGEEEEE
T ss_pred             ccCCEEEEECccHHHHHHHHHHHHcCCCcCeEEEEE
Confidence            345789999999999999999999986224899998

>2egg_A AROE, shikimate 5-dehydrogenase; dimer, X-RAY diffraction, structural genomics, NPPSFA; 2.25A {Geobacillus kaustophilus}

Probab=81.49  E-value=1.5  Score=40.60  Aligned_cols=35  Identities=11%  Similarity=0.348  Sum_probs=29.9

Q ss_pred             CCCcEEEEcCcHHHHHHHHHHHHcCCCCCcEEEEcCC
Q 012165           50 ENREFVIVGGGNAAGYAARTFVEHGMADGRLCIVSKE   86 (469)
Q Consensus        50 ~~~~vvIIGgG~AGl~aA~~L~~~g~~~~~V~vie~~   86 (469)
                      ..++++|||+|.+|.++|..|.+.|..  +|+++++.
T Consensus       140 ~~~~vlVlGaGg~g~aia~~L~~~G~~--~V~v~nR~  174 (297)
T 2egg_A          140 DGKRILVIGAGGGARGIYFSLLSTAAE--RIDMANRT  174 (297)
T ss_dssp             TTCEEEEECCSHHHHHHHHHHHTTTCS--EEEEECSS
T ss_pred             CCCEEEEECcHHHHHHHHHHHHHCCCC--EEEEEeCC
Confidence            457899999999999999999998753  78888754

>3pwz_A Shikimate dehydrogenase 3; alpha-beta, oxidoreductase; 1.71A {Pseudomonas putida}

Probab=81.39  E-value=1.8  Score=39.54  Aligned_cols=36  Identities=28%  Similarity=0.494  Sum_probs=30.2

Q ss_pred             CCCCcEEEEcCcHHHHHHHHHHHHcCCCCCcEEEEcCC
Q 012165           49 NENREFVIVGGGNAAGYAARTFVEHGMADGRLCIVSKE   86 (469)
Q Consensus        49 ~~~~~vvIIGgG~AGl~aA~~L~~~g~~~~~V~vie~~   86 (469)
                      ...++++|+|+|-+|-+++..|.+.|..  +|+++++.
T Consensus       118 l~~k~~lvlGaGg~~~aia~~L~~~G~~--~v~i~~R~  153 (272)
T 3pwz_A          118 LRNRRVLLLGAGGAVRGALLPFLQAGPS--ELVIANRD  153 (272)
T ss_dssp             CTTSEEEEECCSHHHHHHHHHHHHTCCS--EEEEECSC
T ss_pred             ccCCEEEEECccHHHHHHHHHHHHcCCC--EEEEEeCC
Confidence            3567999999999999999999998853  78887654

>3tri_A Pyrroline-5-carboxylate reductase; amino acid biosynthesis, oxidoreductase; HET: NAP; 2.50A {Coxiella burnetii}

Probab=81.33  E-value=1.7  Score=39.83  Aligned_cols=36  Identities=22%  Similarity=0.588  Sum_probs=30.0

Q ss_pred             CCcEEEEcCcHHHHHHHHHHHHcCCCCCcEEEEcCC
Q 012165           51 NREFVIVGGGNAAGYAARTFVEHGMADGRLCIVSKE   86 (469)
Q Consensus        51 ~~~vvIIGgG~AGl~aA~~L~~~g~~~~~V~vie~~   86 (469)
                      +.+|.|||+|.-|.+.|..|.+.|++..+|++.+++
T Consensus         3 ~~~I~iIG~G~mG~aia~~l~~~g~~~~~V~v~dr~   38 (280)
T 3tri_A            3 TSNITFIGGGNMARNIVVGLIANGYDPNRICVTNRS   38 (280)
T ss_dssp             CSCEEEESCSHHHHHHHHHHHHTTCCGGGEEEECSS
T ss_pred             CCEEEEEcccHHHHHHHHHHHHCCCCCCeEEEEeCC
Confidence            467999999999999999999998744478887654

>1t2d_A LDH-P, L-lactate dehydrogenase; ternary complex, oxidoreductase; HET: NAD; 1.10A {Plasmodium falciparum} SCOP: c.2.1.5 d.162.1.1 PDB: 1t25_A* 1t26_A* 1t2c_A* 1t24_A* 2x8l_A 2ydn_A* 2a94_A* 1u4s_A* 1u5a_A* 1u5c_A* 1u4o_A* 1t2e_A* 1xiv_A* 1ceq_A 1ldg_A* 1cet_A* 1oc4_A* 2a92_A* 2aa3_A*

Probab=81.32  E-value=1.8  Score=40.72  Aligned_cols=35  Identities=20%  Similarity=0.379  Sum_probs=29.5

Q ss_pred             CCcEEEEcCcHHHHHHHHHHHHcCCCCCcEEEEcCCC
Q 012165           51 NREFVIVGGGNAAGYAARTFVEHGMADGRLCIVSKEA   87 (469)
Q Consensus        51 ~~~vvIIGgG~AGl~aA~~L~~~g~~~~~V~vie~~~   87 (469)
                      +.+|.|||+|..|...|..|+..|+-  +|+++|.+.
T Consensus         4 ~~kI~VIGaG~vG~~ia~~la~~g~~--~v~L~Di~~   38 (322)
T 1t2d_A            4 KAKIVLVGSGMIGGVMATLIVQKNLG--DVVLFDIVK   38 (322)
T ss_dssp             CCEEEEECCSHHHHHHHHHHHHTTCC--EEEEECSSS
T ss_pred             CCEEEEECCCHHHHHHHHHHHhCCCC--eEEEEeCCH
Confidence            35899999999999999999998862  499988653

>2dwc_A PH0318, 433AA long hypothetical phosphoribosylglycinamide transferase; purine ribonucleotide biosynthesis; HET: ADP; 1.70A {Pyrococcus horikoshii} PDB: 2czg_A*

Probab=81.13  E-value=2.1  Score=41.85  Aligned_cols=40  Identities=15%  Similarity=0.252  Sum_probs=32.8

Q ss_pred             cCCCCCCcEEEEcCcHHHHHHHHHHHHcCCCCCcEEEEcCCCC
Q 012165           46 SFANENREFVIVGGGNAAGYAARTFVEHGMADGRLCIVSKEAY   88 (469)
Q Consensus        46 ~~~~~~~~vvIIGgG~AGl~aA~~L~~~g~~~~~V~vie~~~~   88 (469)
                      |+..++++|+|+|+|..|...+..+++.|+   ++.+++..+.
T Consensus        14 ~~~~~~~~ili~g~g~~g~~~~~a~~~~G~---~v~~v~~~~~   53 (433)
T 2dwc_A           14 ATTDSAQKILLLGSGELGKEIAIEAQRLGV---EVVAVDRYAN   53 (433)
T ss_dssp             TTSTTCCEEEEESCSHHHHHHHHHHHHTTC---EEEEEESSTT
T ss_pred             CCCCCCCEEEEECCCHHHHHHHHHHHHCCC---EEEEEECCCC
Confidence            334455789999999999999999999988   7888887654

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

ID	Length	Definition	E-value
Query	469
d1q1ra2	133	c.3.1.5 (A:115-247) Putidaredoxin reductase {Pseud	3e-19
d1d7ya2	121	c.3.1.5 (A:116-236) NADH-dependent ferredoxin redu	1e-17
d1m6ia2	137	c.3.1.5 (A:264-400) Apoptosis-inducing factor (AIF	1e-17
d1nhpa2	123	c.3.1.5 (A:120-242) NADH peroxidase {Enterococcus	2e-15
d1gesa2	116	c.3.1.5 (A:147-262) Glutathione reductase {Escheri	5e-14
d1xhca2	122	c.3.1.5 (A:104-225) NADH oxidase /nitrite reductas	2e-13
d1d7ya1	183	c.3.1.5 (A:5-115,A:237-308) NADH-dependent ferredo	7e-13
d1d7ya1	183	c.3.1.5 (A:5-115,A:237-308) NADH-dependent ferredo	3e-08
d1m6ia1	213	c.3.1.5 (A:128-263,A:401-477) Apoptosis-inducing f	3e-12
d1m6ia1	213	c.3.1.5 (A:128-263,A:401-477) Apoptosis-inducing f	2e-05
d1onfa2	117	c.3.1.5 (A:154-270) Glutathione reductase {Plasmod	3e-12
d1q1ra1	185	c.3.1.5 (A:2-114,A:248-319) Putidaredoxin reductas	1e-11
d1q1ra1	185	c.3.1.5 (A:2-114,A:248-319) Putidaredoxin reductas	0.001
d1aoga2	117	c.3.1.5 (A:170-286) Trypanothione reductase {Trypa	2e-10
d1mo9a2	121	c.3.1.5 (A:193-313) NADH-dependent 2-ketopropyl co	2e-10
d1feca2	117	c.3.1.5 (A:170-286) Trypanothione reductase {Crith	9e-10
d1nhpa1	198	c.3.1.5 (A:1-119,A:243-321) NADH peroxidase {Enter	2e-08
d1h6va2	122	c.3.1.5 (A:171-292) Mammalian thioredoxin reductas	5e-08
d1lvla2	115	c.3.1.5 (A:151-265) Dihydrolipoamide dehydrogenase	2e-07
d3grsa2	125	c.3.1.5 (A:166-290) Glutathione reductase {Human (	1e-06
d1ebda2	117	c.3.1.5 (A:155-271) Dihydrolipoamide dehydrogenase	2e-06
d3lada2	119	c.3.1.5 (A:159-277) Dihydrolipoamide dehydrogenase	2e-06
d1ojta2	125	c.3.1.5 (A:276-400) Dihydrolipoamide dehydrogenase	4e-06
d2gjca1	311	c.3.1.6 (A:16-326) Thiazole biosynthetic enzyme Th	5e-06
d1feca1	240	c.3.1.5 (A:1-169,A:287-357) Trypanothione reductas	2e-05
d1xhca1	167	c.3.1.5 (A:1-103,A:226-289) NADH oxidase /nitrite	2e-05
d1xhca1	167	c.3.1.5 (A:1-103,A:226-289) NADH oxidase /nitrite	7e-05
d1v59a2	122	c.3.1.5 (A:161-282) Dihydrolipoamide dehydrogenase	4e-05
d1mo9a1	261	c.3.1.5 (A:2-192,A:314-383) NADH-dependent 2-ketop	8e-05
d1ojta1	229	c.3.1.5 (A:117-275,A:401-470) Dihydrolipoamide deh	1e-04
d1v59a1	233	c.3.1.5 (A:1-160,A:283-355) Dihydrolipoamide dehyd	1e-04
d1ebda1	223	c.3.1.5 (A:7-154,A:272-346) Dihydrolipoamide dehyd	2e-04
d1trba1	190	c.3.1.5 (A:1-118,A:245-316) Thioredoxin reductase	2e-04
d1dxla1	221	c.3.1.5 (A:4-152,A:276-347) Dihydrolipoamide dehyd	2e-04
d3grsa1	221	c.3.1.5 (A:18-165,A:291-363) Glutathione reductase	3e-04
d1ps9a2	162	c.3.1.1 (A:466-627) 2,4-dienoyl-CoA reductase, C-t	0.002
d1fcda1	186	c.3.1.5 (A:1-114,A:256-327) Flavocytochrome c sulf	0.002
d1djqa3	233	c.4.1.1 (A:341-489,A:646-729) Trimethylamine dehyd	0.002
d1xdia1	233	c.3.1.5 (A:2-161,A:276-348) Dihydrolipoamide dehyd	0.002
d1aoga1	238	c.3.1.5 (A:3-169,A:287-357) Trypanothione reductas	0.003

>d1q1ra2 c.3.1.5 (A:115-247) Putidaredoxin reductase {Pseudomonas putida [TaxId: 303]} Length = 133

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Putidaredoxin reductase
species: Pseudomonas putida [TaxId: 303]

 Score = 81.5 bits (200), Expect = 3e-19
 Identities = 37/128 (28%), Positives = 58/128 (45%), Gaps = 20/128 (15%)

Query: 178 PEKIGGYLPGVHYIRDVADADALISSLEKAKKVVVVGGGYIGMEVAAAAVGWKLDTTRYE 237
                G      Y+R + DA+ +   L    ++VV+GGGYIG+EVAA A+   +  T  +
Sbjct: 6   ASGAVGKANNFRYLRTLEDAECIRRQLIADNRLVVIGGGYIGLEVAATAIKANMHVTLLD 65

Query: 238 -------------------QLYQQNGVKFVKGASIKNLEAGSDG-RVAAVKLEDGSTIDA 277
                               L+++ GV    G  +   E  +D  +V AV  EDG+ + A
Sbjct: 66  TAARVLERVTAPPVSAFYEHLHREAGVDIRTGTQVCGFEMSTDQQKVTAVLCEDGTRLPA 125

Query: 278 DTIVIGIG 285
           D ++ GIG
Sbjct: 126 DLVIAGIG 133

>d1d7ya2 c.3.1.5 (A:116-236) NADH-dependent ferredoxin reductase, BphA4 {Pseudomonas sp., KKS102 [TaxId: 306]} Length = 121

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: NADH-dependent ferredoxin reductase, BphA4
species: Pseudomonas sp., KKS102 [TaxId: 306]

 Score = 76.7 bits (188), Expect = 1e-17
 Identities = 32/124 (25%), Positives = 52/124 (41%), Gaps = 25/124 (20%)

Query: 181 IGGYLPGVHYIRDVADADALISSLEKAKKVVVVGGGYIGMEVAAAAVGWKLDTT------ 234
           + G    VH +R + DA  + + L    ++++VGGG IG+E+AA A    +  +      
Sbjct: 4   LQGATMPVHTLRTLEDARRIQAGLRPQSRLLIVGGGVIGLELAATARTAGVHVSLVETQP 63

Query: 235 -------------RYEQLYQQNGVKFVKGASIKNLEAGSDGRVAAVKLEDGSTIDADTIV 281
                           + +   GV      S+     G       V L+DG+ I AD +V
Sbjct: 64  RLMSRAAPATLADFVARYHAAQGVDLRFERSVTGSVDG------VVLLDDGTRIAADMVV 117

Query: 282 IGIG 285
           +GIG
Sbjct: 118 VGIG 121

>d1m6ia2 c.3.1.5 (A:264-400) Apoptosis-inducing factor (AIF) {Human (Homo sapiens) [TaxId: 9606]} Length = 137

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Apoptosis-inducing factor (AIF)
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 77.1 bits (189), Expect = 1e-17
 Identities = 25/132 (18%), Positives = 47/132 (35%), Gaps = 25/132 (18%)

Query: 177 FPEKIGGYLPGVHYIRDVADADALISSLEKAKKVVVVGGGYIGMEVAAAAV--------- 227
                          R + D  +L     + K + ++GGG++G E+A A           
Sbjct: 7   IDRAGAEVKSRTTLFRKIGDFRSLEKISREVKSITIIGGGFLGSELACALGRKARALGTE 66

Query: 228 -----------GWKLDTT---RYEQLYQQNGVKFVKGASIKNLEAGSDGRVAAVKLEDGS 273
                      G  L         +  ++ GVK +  A ++++          +KL+DG 
Sbjct: 67  VIQLFPEKGNMGKILPEYLSNWTMEKVRREGVKVMPNAIVQSVGV--SSGKLLIKLKDGR 124

Query: 274 TIDADTIVIGIG 285
            ++ D IV  +G
Sbjct: 125 KVETDHIVAAVG 136

>d1nhpa2 c.3.1.5 (A:120-242) NADH peroxidase {Enterococcus faecalis [TaxId: 1351]} Length = 123

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: NADH peroxidase
species: Enterococcus faecalis [TaxId: 1351]

 Score = 70.6 bits (172), Expect = 2e-15
 Identities = 30/124 (24%), Positives = 47/124 (37%), Gaps = 24/124 (19%)

Query: 182 GGYLPGVHYIRDVADADALISSLE--KAKKVVVVGGGYIGMEVAAAAVGWKLDTT----- 234
           G  L  ++ +R    A  L       +   VVV+G GYIG+E A A        T     
Sbjct: 3   GKDLDNIYLMRGRQWAIKLKQKTVDPEVNNVVVIGSGYIGIEAAEAFAKAGKKVTVIDIL 62

Query: 235 --------------RYEQLYQQNGVKFVKGASIKNLEAGSDGRVAAVKLEDGSTIDADTI 280
                            +  + N +    G +++  E   DGRV  V + D +  DAD +
Sbjct: 63  DRPLGVYLDKEFTDVLTEEMEANNITIATGETVERYEG--DGRVQKV-VTDKNAYDADLV 119

Query: 281 VIGI 284
           V+ +
Sbjct: 120 VVAV 123

>d1gesa2 c.3.1.5 (A:147-262) Glutathione reductase {Escherichia coli [TaxId: 562]} Length = 116

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Glutathione reductase
species: Escherichia coli [TaxId: 562]

 Score = 66.3 bits (161), Expect = 5e-14
 Identities = 30/119 (25%), Positives = 47/119 (39%), Gaps = 22/119 (18%)

Query: 185 LPGVHYIRDVADADALISSLEKAKKVVVVGGGYIGMEVAAAAVGWKLDTTRY-------- 236
           +PGV Y  D     AL       ++V VVG GYIG+E+     G    T  +        
Sbjct: 2   IPGVEYGIDSDGFFAL---PALPERVAVVGAGYIGVELGGVINGLGAKTHLFEMFDAPLP 58

Query: 237 ----------EQLYQQNGVKFVKGASIKNLEAGSDGRVAAVKLEDGSTIDADTIVIGIG 285
                      ++    G +    A  K +   +DG +  ++LEDG +   D ++  IG
Sbjct: 59  SFDPMISETLVEVMNAEGPQLHTNAIPKAVVKNTDGSL-TLELEDGRSETVDCLIWAIG 116

>d1xhca2 c.3.1.5 (A:104-225) NADH oxidase /nitrite reductase {Pyrococcus furiosus [TaxId: 2261]} Length = 122

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: NADH oxidase /nitrite reductase
species: Pyrococcus furiosus [TaxId: 2261]

 Score = 64.3 bits (156), Expect = 2e-13
 Identities = 25/121 (20%), Positives = 49/121 (40%), Gaps = 27/121 (22%)

Query: 185 LPG---VHYIRDVADADALISSLEKAKKVVVVGGGYIGMEVAAAAVGWKLDTT------- 234
           + G   +  +R + DAD +  S+E + + +++GGG+IG+E+A                  
Sbjct: 7   IKGKEYLLTLRTIFDADRIKESIENSGEAIIIGGGFIGLELAGNLAEAGYHVKLIHRGAM 66

Query: 235 ----------RYEQLYQQNGVKFVKGASIKNLEAGSDGRVAAVKLEDGSTIDADTIVIGI 284
                       + + ++ GVKF   + +   EA  +G      L +   I+    +  I
Sbjct: 67  FLGLDEELSNMIKDMLEETGVKFFLNSELL--EANEEGV-----LTNSGFIEGKVKICAI 119

Query: 285 G 285
           G
Sbjct: 120 G 120

>d1d7ya1 c.3.1.5 (A:5-115,A:237-308) NADH-dependent ferredoxin reductase, BphA4 {Pseudomonas sp., KKS102 [TaxId: 306]} Length = 183

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: NADH-dependent ferredoxin reductase, BphA4
species: Pseudomonas sp., KKS102 [TaxId: 306]

 Score = 64.8 bits (156), Expect = 7e-13
 Identities = 35/182 (19%), Positives = 58/182 (31%), Gaps = 37/182 (20%)

Query: 208 KKVVVVGGGYIGMEVAAAAVGWKLDTT-----------------------------RYEQ 238
             VVV+G G   +   A                                           
Sbjct: 4   APVVVLGAGLASVSFVAELRQAGYQGLITVVGDEAERPYDRPPLSKDFMAHGDAEKIRLD 63

Query: 239 LYQQNGVKFVKGASIKNLEAGSDGRVAAVKLEDGSTIDADTIVIGIGAKPTVSPFERVGL 298
             +   V+++ G + +      D +   V L DG T+   T+V+  GA P          
Sbjct: 64  CKRAPEVEWLLGVTAQ----SFDPQAHTVALSDGRTLPYGTLVLATGAAPRAVLANDALA 119

Query: 299 NSSV----GGIQVDGQFRTRMPGIFAIGDVAAFPLKMYDRTARVEHVDHARQSAQHCIKA 354
            ++      GI VD   RT  P ++A+GDV      +  R  R+E   +A+       + 
Sbjct: 120 RAAGLACDDGIFVDAYGRTTCPDVYALGDVTRQRNPLSGRFERIETWSNAQNQGIAVARH 179

Query: 355 LL 356
           L+
Sbjct: 180 LV 181

>d1d7ya1 c.3.1.5 (A:5-115,A:237-308) NADH-dependent ferredoxin reductase, BphA4 {Pseudomonas sp., KKS102 [TaxId: 306]} Length = 183

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: NADH-dependent ferredoxin reductase, BphA4
species: Pseudomonas sp., KKS102 [TaxId: 306]

 Score = 51.3 bits (121), Expect = 3e-08
 Identities = 36/184 (19%), Positives = 66/184 (35%), Gaps = 31/184 (16%)

Query: 55  VIVGGGNAAGYAARTFVEHGMADGRLCIVSKEAYAPYERPALTKGYLFPLDKKPARLPGF 114
           V++G G A+        + G   G + +V  EA  PY+RP L+K ++   D +  R    
Sbjct: 7   VVLGAGLASVSFVAELRQAG-YQGLITVVGDEAERPYDRPPLSKDFMAHGDAEKIR---- 61

Query: 115 HTCVGSGGERQTPEWYKEKGIEMIYQDPVTSIDIEKQTLITNSGKLLKYGSLIVATGCTA 174
                        +  +   +E +      S D +  T+  + G+ L YG+L++ATG   
Sbjct: 62  ------------LDCKRAPEVEWLLGVTAQSFDPQAHTVALSDGRTLPYGTLVLATGAAP 109

Query: 175 SRFPEKI-----------GGYLPGVHYIRDVADADALISSLEKAKKVVVVGGGYIGMEVA 223
                              G     +      D  AL    +  ++   + G +  +E  
Sbjct: 110 RAVLANDALARAAGLACDDGIFVDAYGRTTCPDVYALG---DVTRQRNPLSGRFERIETW 166

Query: 224 AAAV 227
           + A 
Sbjct: 167 SNAQ 170

>d1m6ia1 c.3.1.5 (A:128-263,A:401-477) Apoptosis-inducing factor (AIF) {Human (Homo sapiens) [TaxId: 9606]} Length = 213

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Apoptosis-inducing factor (AIF)
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 63.9 bits (154), Expect = 3e-12
 Identities = 44/198 (22%), Positives = 67/198 (33%), Gaps = 21/198 (10%)

Query: 48  ANENREFVIVGGGNAAGYAARTFVEHGMADGRLCIVSKEAYAPYERPALTKGYLFPLDKK 107
           A  +  F+++GGG AA  AAR+         R+ IVS++   PY RP L+K   F  D  
Sbjct: 1   APSHVPFLLIGGGTAAFAAARSIRARD-PGARVLIVSEDPELPYMRPPLSKELWFSDD-- 57

Query: 108 PARLPGFHTCVGSGGERQTP-------------EWYKEKGIEMIYQDPVTSIDIEKQTLI 154
           P           +G ER                   +  G+ ++    V  +D+    + 
Sbjct: 58  PNVTKTLRFKQWNGKERSIYFQPPSFYVSAQDLPHIENGGVAVLTGKKVVQLDVRDNMVK 117

Query: 155 TNSGKLLKYGSLIVATGCTASRFPEKIGGYLPGVHYIRDVADADALISS-----LEKAKK 209
            N G  + Y   ++ATG T         G L              L +         A  
Sbjct: 118 LNDGSQITYEKCLIATGGTEPNVELAKTGGLEIDSDFGGFRVNAELQARSNIWVAGDAAC 177

Query: 210 VVVVGGGYIGMEVAAAAV 227
              +  G   +E    AV
Sbjct: 178 FYDIKLGRRRVEHHDHAV 195

>d1m6ia1 c.3.1.5 (A:128-263,A:401-477) Apoptosis-inducing factor (AIF) {Human (Homo sapiens) [TaxId: 9606]} Length = 213

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Apoptosis-inducing factor (AIF)
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 43.1 bits (100), Expect = 2e-05
 Identities = 32/184 (17%), Positives = 58/184 (31%), Gaps = 9/184 (4%)

Query: 186 PGVHYIRDVADADALISSLEKAKKVVVVGGGYIGMEVAAAAVGWKLDTTRYEQLYQQNGV 245
           P + Y+R     +   S      K +                     + +     +  GV
Sbjct: 39  PELPYMRPPLSKELWFSDDPNVTKTLRFKQWNGKERSIYFQPPSFYVSAQDLPHIENGGV 98

Query: 246 KFVKGASIKNLEAGSDGRVAAVKLEDGSTIDADTIVIGIGAKPTVSPFERVGLNSSVGGI 305
             + G  +  L+   +        +            G      ++    + ++S  GG 
Sbjct: 99  AVLTGKKVVQLDVRDNMVKLNDGSQITYEKCLIAT-GGTEPNVELAKTGGLEIDSDFGGF 157

Query: 306 QVDGQFRTRMPGIFAIGDVAAFPLKMYDRTARVEHVDHARQSAQHCIKALLSAQTHTYDY 365
           +V+ + + R   I+  GD A F      R  RVEH DHA  S +   + +  A       
Sbjct: 158 RVNAELQARS-NIWVAGDAACFYDIKLGRR-RVEHHDHAVVSGRLAGENMTGAAK----- 210

Query: 366 LPYF 369
            PY+
Sbjct: 211 -PYW 213

>d1onfa2 c.3.1.5 (A:154-270) Glutathione reductase {Plasmodium falciparum [TaxId: 5833]} Length = 117

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Glutathione reductase
species: Plasmodium falciparum [TaxId: 5833]

 Score = 61.3 bits (148), Expect = 3e-12
 Identities = 21/127 (16%), Positives = 49/127 (38%), Gaps = 29/127 (22%)

Query: 177 FPEKIGGYLPGVHYIRDVADADALISSLEKAKKVVVVGGGYIGMEVAAAAVGWKLDTTRY 236
           FP      + G+       +      +++++KK+ +VG GYI +E+        +D+  +
Sbjct: 1   FPP-----VKGIENTISSDEFF----NIKESKKIGIVGSGYIAVELINVIKRLGIDSYIF 51

Query: 237 E------------------QLYQQNGVKFVKGASIKNLEAGSDGRVAAVKLEDGSTIDA- 277
                                 ++N +  V  A +  ++  SD  + ++ L DG   +  
Sbjct: 52  ARGNRILRKFDESVINVLENDMKKNNINIVTFADVVEIKKVSDKNL-SIHLSDGRIYEHF 110

Query: 278 DTIVIGI 284
           D ++  +
Sbjct: 111 DHVIYCV 117

>d1q1ra1 c.3.1.5 (A:2-114,A:248-319) Putidaredoxin reductase {Pseudomonas putida [TaxId: 303]} Length = 185

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Putidaredoxin reductase
species: Pseudomonas putida [TaxId: 303]

 Score = 61.3 bits (147), Expect = 1e-11
 Identities = 36/182 (19%), Positives = 55/182 (30%), Gaps = 35/182 (19%)

Query: 208 KKVVVVGGGYIGMEVAAAAVGWKLDTT--------------------------------- 234
             VV+VG G  G+EVA        +                                   
Sbjct: 4   DNVVIVGTGLAGVEVAFGLRASGWEGNIRLVGDATVIPHHLPPLSKAYLAGKATAESLYL 63

Query: 235 RYEQLYQQNGVKFVKGASIKNLEAGSDGRVAAVKLEDGSTIDADTIVIGIGAKPTVSPFE 294
           R    Y    ++ + G  +  +      +V                  G    P      
Sbjct: 64  RTPDAYAAQNIQLLGGTQVTAINRDRQ-QVILSDGRALDYDRLVLATGGRPLIPNCELAS 122

Query: 295 RVGLNSSVGGIQVDGQFRTRMPGIFAIGDVAAFPLKMYDRTARVEHVDHARQSAQHCIKA 354
             GL     GI ++   +T  P I A+GD A F  ++YDR  R+E V +A + A+     
Sbjct: 123 AAGLQV-DNGIVINEHMQTSDPLIMAVGDCARFHSQLYDRWVRIESVPNALEQARKIAAI 181

Query: 355 LL 356
           L 
Sbjct: 182 LC 183

>d1q1ra1 c.3.1.5 (A:2-114,A:248-319) Putidaredoxin reductase {Pseudomonas putida [TaxId: 303]} Length = 185

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Putidaredoxin reductase
species: Pseudomonas putida [TaxId: 303]

 Score = 37.8 bits (86), Expect = 0.001
 Identities = 31/182 (17%), Positives = 53/182 (29%), Gaps = 13/182 (7%)

Query: 49  NENREFVIVGGGNAAGYAARTFVEHGMADGRLCIVSKEAYAPYERPALTKGYLFPLDKKP 108
           N N   VIVG G A    A      G  +G + +V      P+  P L+K YL       
Sbjct: 1   NANDNVVIVGTGLAGVEVAFGLRASGW-EGNIRLVGDATVIPHHLPPLSKAYLAGKATAE 59

Query: 109 ARLPGFHTCVGSGGERQTPEW---YKEKGIEMIYQDPVTSIDIEKQTLITNSGKLLKYGS 165
           +          +   +           +  + +      ++D ++  L T    L+    
Sbjct: 60  SLYLRTPDAYAAQNIQLLGGTQVTAINRDRQQVILSDGRALDYDRLVLATGGRPLIPNCE 119

Query: 166 LIVATGCTASRFPEKIGGYLPGVHYIRDVADADALISSLEKAKKVVVVGGGYIGMEVAAA 225
           L  A G                   I  V D          A+    +   ++ +E    
Sbjct: 120 LASAAGLQVDNGIVINEHMQTSDPLIMAVGDC---------ARFHSQLYDRWVRIESVPN 170

Query: 226 AV 227
           A+
Sbjct: 171 AL 172

>d1aoga2 c.3.1.5 (A:170-286) Trypanothione reductase {Trypanosoma cruzi [TaxId: 5693]} Length = 117

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Trypanothione reductase
species: Trypanosoma cruzi [TaxId: 5693]

 Score = 56.0 bits (134), Expect = 2e-10
 Identities = 25/121 (20%), Positives = 47/121 (38%), Gaps = 25/121 (20%)

Query: 185 LPGVHYIRDVADADALISSLEKAKKVVVVGGGYIGMEVAAAAVGWKLDTT---------- 234
           +PG+ +     +A  L    E  ++V+ VGGG+I +E A     +K              
Sbjct: 1   IPGIEHCISSNEAFYL---PEPPRRVLTVGGGFISVEFAGIFNAYKPKDGQVTLCYRGEM 57

Query: 235 -----------RYEQLYQQNGVKFVKGASIKNLEAGSDGRVAAVKLEDGSTIDADTIVIG 283
                         +    NG++ +   +   +E  +DG   +V  E G  +D D +++ 
Sbjct: 58  ILRGFDHTLREELTKQLTANGIQILTKENPAKVELNADGSK-SVTFESGKKMDFDLVMMA 116

Query: 284 I 284
           I
Sbjct: 117 I 117

>d1mo9a2 c.3.1.5 (A:193-313) NADH-dependent 2-ketopropyl coenzyme M oxidoreductase/carboxylase {Xanthobacter sp., py2 [TaxId: 35809]} Length = 121

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: NADH-dependent 2-ketopropyl coenzyme M oxidoreductase/carboxylase
species: Xanthobacter sp., py2 [TaxId: 35809]

 Score = 56.1 bits (134), Expect = 2e-10
 Identities = 25/115 (21%), Positives = 42/115 (36%), Gaps = 23/115 (20%)

Query: 194 VADADALISSL--EKAKKVVVVGGGYIGMEVAAAAVGWKLDTTRY--------------- 236
           V D   L+  L  E    VVVVGG    +E           T                  
Sbjct: 7   VFDHATLVEELDYEPGSTVVVVGGSKTAVEYGCFFNATGRRTVMLVRTEPLKLIKDNETR 66

Query: 237 ---EQLYQQNGVKFVKGASIKNLEAGSDGRVAAV---KLEDGSTIDADTIVIGIG 285
                  ++ G++ + G+++  +E  ++GRV AV          I+ D + +G+G
Sbjct: 67  AYVLDRMKEQGMEIISGSNVTRIEEDANGRVQAVVAMTPNGEMRIETDFVFLGLG 121

>d1feca2 c.3.1.5 (A:170-286) Trypanothione reductase {Crithidia fasciculata [TaxId: 5656]} Length = 117

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Trypanothione reductase
species: Crithidia fasciculata [TaxId: 5656]

 Score = 54.1 bits (129), Expect = 9e-10
 Identities = 22/102 (21%), Positives = 37/102 (36%), Gaps = 22/102 (21%)

Query: 205 EKAKKVVVVGGGYIGMEVAAAAVGWKLDTTR---------------------YEQLYQQN 243
           E  K+ + VGGGYI +E A     +K    +                       +  + N
Sbjct: 16  EAPKRALCVGGGYISIEFAGIFNAYKARGGQVDLAYRGDMILRGFDSELRKQLTEQLRAN 75

Query: 244 GVKFVKGASIKNLEAGSDGRVAAVKLEDGSTIDADTIVIGIG 285
           G+      +   +   +DG    V  E G+  D D +++ IG
Sbjct: 76  GINVRTHENPAKVTKNADGTR-HVVFESGAEADYDVVMLAIG 116

>d1nhpa1 c.3.1.5 (A:1-119,A:243-321) NADH peroxidase {Enterococcus faecalis [TaxId: 1351]} Length = 198

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: NADH peroxidase
species: Enterococcus faecalis [TaxId: 1351]

 Score = 52.2 bits (123), Expect = 2e-08
 Identities = 31/190 (16%), Positives = 51/190 (26%), Gaps = 42/190 (22%)

Query: 209 KVVVVGGGYIGMEVAAAAVGWKLDTT---------------------------------R 235
           KV+V+G  + G E     +    D                                    
Sbjct: 2   KVIVLGSSHGGYEAVEELLNLHPDAEIQWYEKGDFISFLSAGMQLYLEGKVKDVNSVRYM 61

Query: 236 YEQLYQQNGVKFVKGASIKNLEAGSDGRVAAV-KLEDGSTIDADTIVIGIGAKPTVSPFE 294
             +  +  GV       I  ++              +    + D ++I  GA P      
Sbjct: 62  TGEKMESRGVNVFSNTEITAIQPKEHQVTVKDLVSGEERVENYDKLIISPGAVPFELDGV 121

Query: 295 RVGLNSSV--------GGIQVDGQFRTRMPGIFAIGDVAAFPLKMYDRTARVEHVDHARQ 346
           R               G I+ D   RT  P +FA+GD         D    +    +AR+
Sbjct: 122 RPNTAWLKGTLELHPNGLIKTDEYMRTSEPDVFAVGDATLIKYNPADTEVNIALATNARK 181

Query: 347 SAQHCIKALL 356
             +  +K L 
Sbjct: 182 QGRFAVKNLE 191

>d1h6va2 c.3.1.5 (A:171-292) Mammalian thioredoxin reductase {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 122

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Mammalian thioredoxin reductase
species: Rat (Rattus norvegicus) [TaxId: 10116]

 Score = 49.3 bits (117), Expect = 5e-08
 Identities = 20/102 (19%), Positives = 41/102 (40%), Gaps = 24/102 (23%)

Query: 208 KKVVVVGGGYIGMEVAAAAVGWKLDTT-----------------RYEQLYQQNGVKFVKG 250
            K +VVG  Y+ +E A    G  LD T                 +  +  +++G+KF++ 
Sbjct: 21  GKTLVVGASYVALECAGFLAGIGLDVTVMVRSILLRGFDQDMANKIGEHMEEHGIKFIRQ 80

Query: 251 ASIKNLEAGSDGRVAAVKL-------EDGSTIDADTIVIGIG 285
                +E    G    +K+       E+    + +T+++ +G
Sbjct: 81  FVPTKIEQIEAGTPGRLKVTAKSTNSEETIEDEFNTVLLAVG 122

>d1lvla2 c.3.1.5 (A:151-265) Dihydrolipoamide dehydrogenase {Pseudomonas putida [TaxId: 303]} Length = 115

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Dihydrolipoamide dehydrogenase
species: Pseudomonas putida [TaxId: 303]

 Score = 47.5 bits (112), Expect = 2e-07
 Identities = 24/120 (20%), Positives = 44/120 (36%), Gaps = 25/120 (20%)

Query: 185 LP-GVHYIRDVADADALISSLEKAKKVVVVGGGYIGMEVAAAAVGWKLDT---------- 233
           LP G   I     +   ++     + +VVVGGGYIG+E+  A                  
Sbjct: 2   LPLGGPVI----SSTEALAPKALPQHLVVVGGGYIGLELGIAYRKLGAQVSVVEARERIL 57

Query: 234 --------TRYEQLYQQNGVKFVKGASIKNLEAGSDGRVAAVKLEDGSTIDADTIVIGIG 285
                       +  ++ G+    G S++  E G    +A         ++AD +++ +G
Sbjct: 58  PTYDSELTAPVAESLKKLGIALHLGHSVEGYENG--CLLANDGKGGQLRLEADRVLVAVG 115

>d3grsa2 c.3.1.5 (A:166-290) Glutathione reductase {Human (Homo sapiens) [TaxId: 9606]} Length = 125

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Glutathione reductase
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 45.2 bits (106), Expect = 1e-06
 Identities = 25/126 (19%), Positives = 42/126 (33%), Gaps = 28/126 (22%)

Query: 185 LPGVHYIRDVADADALISSLEKAKKVVVVGGGYIGMEVAAAAVGWKLDTT---------- 234
           +PG            L    E   + V+VG GYI +E+A         T+          
Sbjct: 3   IPGASLGITSDGFFQL---EELPGRSVIVGAGYIAVEMAGILSALGSKTSLMIRHDKVLR 59

Query: 235 --------RYEQLYQQNGVKFVKGASIKNLEAGSDG-RVAAVKLEDG------STIDADT 279
                      +  +  GV+ +K + +K ++    G  V+ V    G         D D 
Sbjct: 60  SFDSMISTNCTEELENAGVEVLKFSQVKEVKKTLSGLEVSMVTAVPGRLPVMTMIPDVDC 119

Query: 280 IVIGIG 285
           ++  IG
Sbjct: 120 LLWAIG 125

>d1ebda2 c.3.1.5 (A:155-271) Dihydrolipoamide dehydrogenase {Bacillus stearothermophilus [TaxId: 1422]} Length = 117

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Dihydrolipoamide dehydrogenase
species: Bacillus stearothermophilus [TaxId: 1422]

 Score = 44.4 bits (104), Expect = 2e-06
 Identities = 29/116 (25%), Positives = 48/116 (41%), Gaps = 19/116 (16%)

Query: 186 PGVHYIRDVADADALISSLEKAKKVVVVGGGYIGMEVAAAAVGWKLDTT----------- 234
           P   +   + D+   ++  E  K +VV+GGGYIG+E+  A   +    T           
Sbjct: 1   PNFKFSNRILDSTGALNLGEVPKSLVVIGGGYIGIELGTAYANFGTKVTILEGAGEILSG 60

Query: 235 -------RYEQLYQQNGVKFVKGASIKNLEAGSDG-RVAAVKLEDGSTIDADTIVI 282
                    ++  ++ GV+ V  A  K  E   DG  V      +  TIDAD +++
Sbjct: 61  FEKQMAAIIKKRLKKKGVEVVTNALAKGAEEREDGVTVTYEANGETKTIDADYVLV 116

>d3lada2 c.3.1.5 (A:159-277) Dihydrolipoamide dehydrogenase {Azotobacter vinelandii [TaxId: 354]} Length = 119

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Dihydrolipoamide dehydrogenase
species: Azotobacter vinelandii [TaxId: 354]

 Score = 44.4 bits (104), Expect = 2e-06
 Identities = 20/111 (18%), Positives = 40/111 (36%), Gaps = 19/111 (17%)

Query: 194 VADADALISSLEKAKKVVVVGGGYIGMEVAAAAVGWKLDTTRYEQLYQQN---------- 243
           + D+   +       K+ V+G G IG+E+ +       + T  E + +            
Sbjct: 9   IVDSTGALDFQNVPGKLGVIGAGVIGLELGSVWARLGAEVTVLEAMDKFLPAVDEQVAKE 68

Query: 244 --------GVKFVKGASIKNLEAGSDG-RVAAVKLEDGSTIDADTIVIGIG 285
                   G+K + GA +   E  +    V  V  E   +   D +++ +G
Sbjct: 69  AQKILTKQGLKILLGARVTGTEVKNKQVTVKFVDAEGEKSQAFDKLIVAVG 119

>d1ojta2 c.3.1.5 (A:276-400) Dihydrolipoamide dehydrogenase {Neisseria meningitidis [TaxId: 487]} Length = 125

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Dihydrolipoamide dehydrogenase
species: Neisseria meningitidis [TaxId: 487]

 Score = 44.1 bits (103), Expect = 4e-06
 Identities = 16/121 (13%), Positives = 38/121 (31%), Gaps = 20/121 (16%)

Query: 185 LPGVHYIRDVADADALISSLEKAKKVVVVGGGYIGMEVAAAAVGWKLDTT---------- 234
           LP +     + D+   ++  E   K++++GGG IG+E+                      
Sbjct: 4   LPFIPEDPRIIDSSGALALKEVPGKLLIIGGGIIGLEMGTVYSTLGSRLDVVEMMDGLMQ 63

Query: 235 --------RYEQLYQQNGVKFVKGASIKNLEAGSDGRVAAVKLEDGS--TIDADTIVIGI 284
                    +++  +      +       +E   DG     +  +        D +++  
Sbjct: 64  GADRDLVKVWQKQNEYRFDNIMVNTKTVAVEPKEDGVYVTFEGANAPKEPQRYDAVLVAA 123

Query: 285 G 285
           G
Sbjct: 124 G 124

>d2gjca1 c.3.1.6 (A:16-326) Thiazole biosynthetic enzyme Thi4 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 311

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: Thi4-like
domain: Thiazole biosynthetic enzyme Thi4
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 46.1 bits (108), Expect = 5e-06
 Identities = 27/278 (9%), Positives = 67/278 (24%), Gaps = 54/278 (19%)

Query: 55  VIVGGG----NAAGYAARTFVEHGMADGRLCIVSKEAYAPYERPALTKGYLFPLDKKPAR 110
           +IVG G    +AA   A+   +      ++CI+                           
Sbjct: 54  IIVGAGSSGLSAAYVIAKNRPDL-----KVCIIESSVA---------------------- 86

Query: 111 LPGFHTCVGSGGERQTPEWYKEKGIEMIYQDPVTSIDIEKQTLITNSGKLLKYGSLIVAT 170
            PG  +    GG+  +    ++     + +  +            + G  +      +  
Sbjct: 87  -PGGGSW--LGGQLFSAMVMRKPAHLFLQELEIP---------YEDEGDYVVVKHAALFI 134

Query: 171 GCTASRFPEKIGGYLPGVHYIRDVADADALISSLEKAKKVVVVGGGYIGMEVAAAAVGWK 230
               S+  +     L     + D+               VV          V  A     
Sbjct: 135 STVLSKVLQLPNVKLFNATCVEDLVTRPPTEKGEVTVAGVVTNWTL-----VTQAHGTQC 189

Query: 231 LDTTRYEQLYQQNGVKFVKGASIKNLEAGSDGRVAAVKLEDGSTIDADTIVIGIGAKPTV 290
                  +L              ++L       ++    +          ++ I     +
Sbjct: 190 CMDPNVIELAGYKNDGT------RDLSQKHGVILSTTGHDGPFGAFCAKRIVDIDQNQKL 243

Query: 291 SPFERVGLNSSVGGIQVDGQFRTRMPGIFAIGDVAAFP 328
              + + +N +   + +       +  ++  G   A  
Sbjct: 244 GGMKGLDMNHAEHDVVIHSGAYAGVDNMYFAGMEVAEL 281

>d1feca1 c.3.1.5 (A:1-169,A:287-357) Trypanothione reductase {Crithidia fasciculata [TaxId: 5656]} Length = 240

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Trypanothione reductase
species: Crithidia fasciculata [TaxId: 5656]

 Score = 43.8 bits (102), Expect = 2e-05
 Identities = 22/104 (21%), Positives = 41/104 (39%), Gaps = 12/104 (11%)

Query: 238 QLYQQNGVKFVKG-ASIKNLEAGSDGRVAAVKLEDGSTIDADTIVIGIGAKPTVSPF--- 293
                 G+ F +G  ++++         A        T+D + I++  G+ P        
Sbjct: 112 MFADTEGLTFHQGFGALQDNHTVLVRESADPNSAVLETLDTEYILLATGSWPQHLGIEVP 171

Query: 294 -------ERVGLNSSVGG-IQVDGQFRTRMPGIFAIGDVAAFPL 329
                  E+ G+  +  G I+VD   +T +  I+AIGDV    +
Sbjct: 172 RSQTLQLEKAGVEVAKNGAIKVDAYSKTNVDNIYAIGDVTDRVM 215

>d1xhca1 c.3.1.5 (A:1-103,A:226-289) NADH oxidase /nitrite reductase {Pyrococcus furiosus [TaxId: 2261]} Length = 167

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: NADH oxidase /nitrite reductase
species: Pyrococcus furiosus [TaxId: 2261]

 Score = 42.8 bits (99), Expect = 2e-05
 Identities = 32/183 (17%), Positives = 50/183 (27%), Gaps = 35/183 (19%)

Query: 55  VIVGGGNAAGYAARTFVEHGMADGRLCIVSKEAYAPYERPALTKGYL----------FPL 104
           VIVG G      A+   +       + ++ KE    Y +P L+              + L
Sbjct: 4   VIVGNGPGGFELAKQLSQ----TYEVTVIDKEPVPYYSKPMLSHYIAGFIPRNRLFPYSL 59

Query: 105 DKKPARLPGFHTCVGSGGERQTPEWYKEKGIEMIYQDPVTSIDIEKQTLITNSGKLLKYG 164
           D    R         +    +  +    +  E+ Y   V +       L   SG     G
Sbjct: 60  DWYRKRGIEIRLAEEAKLIDRGRKVVITEKGEVPYDTLVLATGAPNVDLARRSGIHTGRG 119

Query: 165 SLIVATGCTASRFPEKIGGYLPGVHYIRDVADADALISSLEKAKKVVVVGGGYIGMEVAA 224
            LI     T              V+ I D A+              ++ G     ME A 
Sbjct: 120 ILIDDNFRT----------SAKDVYAIGDCAE-----------YSGIIAGTAKAAMEQAR 158

Query: 225 AAV 227
              
Sbjct: 159 VLA 161

>d1xhca1 c.3.1.5 (A:1-103,A:226-289) NADH oxidase /nitrite reductase {Pyrococcus furiosus [TaxId: 2261]} Length = 167

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: NADH oxidase /nitrite reductase
species: Pyrococcus furiosus [TaxId: 2261]

 Score = 41.2 bits (95), Expect = 7e-05
 Identities = 31/171 (18%), Positives = 47/171 (27%), Gaps = 30/171 (17%)

Query: 209 KVVVVGGGYIGMEVAAAAVG-----------------------WKLDTTRYEQLYQQNGV 245
           KVV+VG G  G E+A                                  R          
Sbjct: 2   KVVIVGNGPGGFELAKQLSQTYEVTVIDKEPVPYYSKPMLSHYIAGFIPRNRLFPYSLDW 61

Query: 246 KFVKGASIKNLEAGSDGRVAAVKLEDGSTIDADTIVIGIGAKPTVSPFERVGLNSSVGGI 305
              +G  I+  E           +           ++     P V    R G+++   GI
Sbjct: 62  YRKRGIEIRLAEEAKLIDRGRKVVITEKGEVPYDTLVLATGAPNVDLARRSGIHTG-RGI 120

Query: 306 QVDGQFRTRMPGIFAIGDVAAFPLKMYDRTARVEHVDHARQSAQHCIKALL 356
            +D  FRT    ++AIGD A +                A + A+     L 
Sbjct: 121 LIDDNFRTSAKDVYAIGDCAEYSG------IIAGTAKAAMEQARVLADILK 165

>d1v59a2 c.3.1.5 (A:161-282) Dihydrolipoamide dehydrogenase {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 122

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Dihydrolipoamide dehydrogenase
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 40.9 bits (95), Expect = 4e-05
 Identities = 19/121 (15%), Positives = 46/121 (38%), Gaps = 24/121 (19%)

Query: 186 PGVHYI-RDVADADALISSLEKAKKVVVVGGGYIGMEVAAAAVGWKLDTT---------- 234
           PG+      +  +   +S  E  K++ ++GGG IG+E+ +         T          
Sbjct: 1   PGIEIDEEKIVSSTGALSLKEIPKRLTIIGGGIIGLEMGSVYSRLGSKVTVVEFQPQIGA 60

Query: 235 --------RYEQLYQQNGVKFVKGASIKNLEAGSDGRVAAVKLEDGS-----TIDADTIV 281
                     ++  ++ G+ F     + + +   D  V  + +ED        ++A+ ++
Sbjct: 61  SMDGEVAKATQKFLKKQGLDFKLSTKVISAKRNDDKNVVEIVVEDTKTNKQENLEAEVLL 120

Query: 282 I 282
           +
Sbjct: 121 V 121

>d1mo9a1 c.3.1.5 (A:2-192,A:314-383) NADH-dependent 2-ketopropyl coenzyme M oxidoreductase/carboxylase {Xanthobacter sp., py2 [TaxId: 35809]} Length = 261

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: NADH-dependent 2-ketopropyl coenzyme M oxidoreductase/carboxylase
species: Xanthobacter sp., py2 [TaxId: 35809]

 Score = 41.9 bits (97), Expect = 8e-05
 Identities = 12/65 (18%), Positives = 27/65 (41%), Gaps = 11/65 (16%)

Query: 275 IDADTIVIGIGAKPTVSPFERVGLNSSV-----------GGIQVDGQFRTRMPGIFAIGD 323
             A  +++ +GA P          ++ +           G + V+   +T +P ++A+GD
Sbjct: 172 FKAKNLILAVGAGPGTLDVPEQPRSAELAKILGLDLGPKGEVLVNEYLQTSVPNVYAVGD 231

Query: 324 VAAFP 328
           +   P
Sbjct: 232 LIGGP 236

>d1ojta1 c.3.1.5 (A:117-275,A:401-470) Dihydrolipoamide dehydrogenase {Neisseria meningitidis [TaxId: 487]} Length = 229

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Dihydrolipoamide dehydrogenase
species: Neisseria meningitidis [TaxId: 487]

 Score = 41.1 bits (95), Expect = 1e-04
 Identities = 14/27 (51%), Positives = 19/27 (70%)

Query: 303 GGIQVDGQFRTRMPGIFAIGDVAAFPL 329
           G I+VD Q RT +P I+AIGD+   P+
Sbjct: 179 GFIEVDKQMRTNVPHIYAIGDIVGQPM 205

>d1v59a1 c.3.1.5 (A:1-160,A:283-355) Dihydrolipoamide dehydrogenase {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 233

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Dihydrolipoamide dehydrogenase
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 41.0 bits (95), Expect = 1e-04
 Identities = 24/107 (22%), Positives = 45/107 (42%), Gaps = 14/107 (13%)

Query: 236 YEQLYQQNGVKFVKG-ASI--KNLEAGSDGRVAAVKLEDGSTIDADTIVIGIGAKPTVSP 292
            E L+++N V + KG  S   +     +        +++   +D   I++  G++ T   
Sbjct: 102 IELLFKKNKVTYYKGNGSFEDETKIRVTPVDGLEGTVKEDHILDVKNIIVATGSEVTPFV 161

Query: 293 ----------FERVGLN-SSVGGIQVDGQFRTRMPGIFAIGDVAAFP 328
                      E++GL     G + +D QF ++ P I  +GDV   P
Sbjct: 162 GRRPYIAGLGAEKIGLEVDKRGRLVIDDQFNSKFPHIKVVGDVTFGP 208

>d1ebda1 c.3.1.5 (A:7-154,A:272-346) Dihydrolipoamide dehydrogenase {Bacillus stearothermophilus [TaxId: 1422]} Length = 223

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Dihydrolipoamide dehydrogenase
species: Bacillus stearothermophilus [TaxId: 1422]

 Score = 40.6 bits (94), Expect = 2e-04
 Identities = 37/146 (25%), Positives = 57/146 (39%), Gaps = 28/146 (19%)

Query: 233 TTRYEQLYQQNGVKFVKG-ASIKNLEAGSDGRVAAVKLEDGSTIDADTIVIGIGAKPTVS 291
           T   E L + N V+ VKG A            V  V  +   T      +I  G++P   
Sbjct: 94  TGGVEGLLKGNKVEIVKGEAYFV-----DANTVRVVNGDSAQTYTFKNAIIATGSRPIEL 148

Query: 292 P----------FERVGLN-SSVGGIQVDGQFRTRMPGIFAIGDVAAFPLKMYDRTARVEH 340
                       E++G+  ++ G I+VD Q RT +P IFAIGD+   P         + H
Sbjct: 149 VGRRPNTDELGLEQIGIKMTNRGLIEVDQQCRTSVPNIFAIGDIVPGPA--------LAH 200

Query: 341 VDHARQSAQHCIKALLSAQTHTYDYL 366
              A    +   +A+    +   DY+
Sbjct: 201 K--ASYEGKVAAEAIAGHPSA-VDYV 223

>d1trba1 c.3.1.5 (A:1-118,A:245-316) Thioredoxin reductase {Escherichia coli [TaxId: 562]} Length = 190

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Thioredoxin reductase
species: Escherichia coli [TaxId: 562]

 Score = 40.2 bits (93), Expect = 2e-04
 Identities = 30/164 (18%), Positives = 46/164 (28%), Gaps = 39/164 (23%)

Query: 206 KAKKVVVVGGGYIGMEVAAAA---------------VGWKLDTTRYEQLYQQNGV----- 245
           K  K++++G G  G   A  A                G    TT  E             
Sbjct: 4   KHSKLLILGSGPAGYTAAVYAARANLQPVLITGMEKGGQLTTTTEVENWPGDPNDLTGPL 63

Query: 246 ---KFVKGASIKNLEAGSDGRVAAVKLEDGSTI-------DADTIVIGIGAKP----TVS 291
              +  + A+    E   D             +         D ++I  GA        +
Sbjct: 64  LMERMHEHATKFETEIIFDHINKVDLQNRPFRLNGDNGEYTCDALIIATGASARYHSPNT 123

Query: 292 PFERVGLNSSVGGIQVDG-----QFRTRMPGIFAIGDVAAFPLK 330
                 L    G I+V         +T +PG+FA GDV     +
Sbjct: 124 AIFEGQLELENGYIKVQSGIHGNATQTSIPGVFAAGDVMDHIYR 167

>d1dxla1 c.3.1.5 (A:4-152,A:276-347) Dihydrolipoamide dehydrogenase {Garden pea (Pisum sativum) [TaxId: 3888]} Length = 221

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Dihydrolipoamide dehydrogenase
species: Garden pea (Pisum sativum) [TaxId: 3888]

 Score = 40.2 bits (93), Expect = 2e-04
 Identities = 25/101 (24%), Positives = 45/101 (44%), Gaps = 11/101 (10%)

Query: 236 YEQLYQQNGVKFVKGASIKNLEAGSDGRVAAVKLEDGSTIDADTIVIGIGAKPT-VSPF- 293
            E L+++N V +VKG                    + + +    I+I  G+     +PF 
Sbjct: 99  IEGLFKKNKVTYVKGYGKFVSP---SEISVDTIEGENTVVKGKHIIIATGSDVKGRTPFT 155

Query: 294 -----ERVGLN-SSVGGIQVDGQFRTRMPGIFAIGDVAAFP 328
                +++G+    +G I V+ +F T + G++AIGDV   P
Sbjct: 156 SGLNLDKIGVETDKLGRILVNERFSTNVSGVYAIGDVIPGP 196

>d3grsa1 c.3.1.5 (A:18-165,A:291-363) Glutathione reductase {Human (Homo sapiens) [TaxId: 9606]} Length = 221

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Glutathione reductase
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 39.9 bits (92), Expect = 3e-04
 Identities = 22/65 (33%), Positives = 28/65 (43%), Gaps = 13/65 (20%)

Query: 277 ADTIVIGIGAKPTVSPFERV----GLN--------SSVGGIQVDGQFRTRMPGIFAIGDV 324
           A  I+I  G  P+  P ERV     L+           G I VD    T + GI+A+GDV
Sbjct: 132 APHILIATGGMPST-PHERVPNTKDLSLNKLGIQTDDKGHIIVDEFQNTNVKGIYAVGDV 190

Query: 325 AAFPL 329
               L
Sbjct: 191 CGKAL 195

>d1ps9a2 c.3.1.1 (A:466-627) 2,4-dienoyl-CoA reductase, C-terminal domain {Escherichia coli [TaxId: 562]} Length = 162

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: C-terminal domain of adrenodoxin reductase-like
domain: 2,4-dienoyl-CoA reductase, C-terminal domain
species: Escherichia coli [TaxId: 562]

 Score = 36.8 bits (84), Expect = 0.002
 Identities = 15/52 (28%), Positives = 18/52 (34%), Gaps = 5/52 (9%)

Query: 176 RFPEKIGGYLPGVHYIRDVADADALISSLEKAKKVVVVGGGYIGMEVAAAAV 227
           R P   G   P V    DV     L        KV ++G G IG + A    
Sbjct: 3   RTPPIDGIDHPKVLSYLDV-----LRDKAPVGNKVAIIGCGGIGFDTAMYLS 49

>d1fcda1 c.3.1.5 (A:1-114,A:256-327) Flavocytochrome c sulfide dehydrogenase, FCSD, flavin-binding subunit {Purple phototrophic bacterium (Chromatium vinosum) [TaxId: 1049]} Length = 186

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Flavocytochrome c sulfide dehydrogenase, FCSD, flavin-binding subunit
species: Purple phototrophic bacterium (Chromatium vinosum) [TaxId: 1049]

 Score = 37.1 bits (84), Expect = 0.002
 Identities = 10/19 (52%), Positives = 11/19 (57%)

Query: 207 AKKVVVVGGGYIGMEVAAA 225
            +KVVVVGGG  G   A  
Sbjct: 2   GRKVVVVGGGTGGATAAKY 20

>d1djqa3 c.4.1.1 (A:341-489,A:646-729) Trimethylamine dehydrogenase, middle domain {Methylophilus methylotrophus, w3a1 [TaxId: 17]} Length = 233

class: Alpha and beta proteins (a/b)
fold: Nucleotide-binding domain
superfamily: Nucleotide-binding domain
family: N-terminal domain of adrenodoxin reductase-like
domain: Trimethylamine dehydrogenase, middle domain
species: Methylophilus methylotrophus, w3a1 [TaxId: 17]

 Score = 37.5 bits (85), Expect = 0.002
 Identities = 24/198 (12%), Positives = 54/198 (27%), Gaps = 25/198 (12%)

Query: 37  RRGFVVAYSSFANENREFVIVGGGNAAGYAARTFVEHGMADGRLCIVSKEAYAPYERPAL 96
           RRG+              +IVG G +   AAR  +E G                      
Sbjct: 35  RRGWHPEKFRQTKNKDSVLIVGAGPSGSEAARVLMESGYTVHLTD--------------- 79

Query: 97  TKGYLFPLDKKPARLPGFHTCVGSGGERQTPEWYKEKGIEMIYQDPVTSIDIEKQTLITN 156
                   +K    L       G G      ++ + +  +++ ++  + + + ++ +  +
Sbjct: 80  ------TAEKIGGHLNQVAALPGLGEWSYHRDYRETQITKLLKKNKESQLALGQKPMTAD 133

Query: 157 SGKLLKYGSLIVATGCTASRFPEKIGGYLPGVHYIRDVADADALISSLEKAKKVVVVGGG 216
                    +I+ATG +                   D+     +    +     ++    
Sbjct: 134 DVLQYGADKVIIATGAS-ECTLWNELKARESEWAENDIKGIYLIG---DAEAPRLIADAT 189

Query: 217 YIGMEVAAAAVGWKLDTT 234
           + G  VA           
Sbjct: 190 FTGHRVAREIEEANPQIA 207

>d1xdia1 c.3.1.5 (A:2-161,A:276-348) Dihydrolipoamide dehydrogenase {Mycobacterium tuberculosis [TaxId: 1773]} Length = 233

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Dihydrolipoamide dehydrogenase
species: Mycobacterium tuberculosis [TaxId: 1773]

 Score = 37.4 bits (85), Expect = 0.002
 Identities = 9/26 (34%), Positives = 11/26 (42%)

Query: 303 GGIQVDGQFRTRMPGIFAIGDVAAFP 328
             + VD   RT   GI+A GD     
Sbjct: 182 NYLTVDRVSRTLATGIYAAGDCTGLL 207

>d1aoga1 c.3.1.5 (A:3-169,A:287-357) Trypanothione reductase {Trypanosoma cruzi [TaxId: 5693]} Length = 238

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Trypanothione reductase
species: Trypanosoma cruzi [TaxId: 5693]

 Score = 36.9 bits (84), Expect = 0.003
 Identities = 13/26 (50%), Positives = 16/26 (61%)

Query: 303 GGIQVDGQFRTRMPGIFAIGDVAAFP 328
           GG+QVD   RT +  I+AIGDV    
Sbjct: 188 GGVQVDEYSRTNVSNIYAIGDVTNRV 213

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	469
d1m6ia1	213	Apoptosis-inducing factor (AIF) {Human (Homo sapie	99.92
d1nhpa1	198	NADH peroxidase {Enterococcus faecalis [TaxId: 135	99.9
d1d7ya1	183	NADH-dependent ferredoxin reductase, BphA4 {Pseudo	99.88
d1q1ra1	185	Putidaredoxin reductase {Pseudomonas putida [TaxId	99.85
d1xhca1	167	NADH oxidase /nitrite reductase {Pyrococcus furios	99.83
d1d7ya2	121	NADH-dependent ferredoxin reductase, BphA4 {Pseudo	99.72
d1ebda1	223	Dihydrolipoamide dehydrogenase {Bacillus stearothe	99.69
d1mo9a1	261	NADH-dependent 2-ketopropyl coenzyme M oxidoreduct	99.66
d1q1ra2	133	Putidaredoxin reductase {Pseudomonas putida [TaxId	99.66
d1dxla1	221	Dihydrolipoamide dehydrogenase {Garden pea (Pisum	99.66
d1ps9a3	179	2,4-dienoyl-CoA reductase, middle domain {Escheric	99.64
d1xdia1	233	Dihydrolipoamide dehydrogenase {Mycobacterium tube	99.63
d1djqa3	233	Trimethylamine dehydrogenase, middle domain {Methy	99.62
d3grsa1	221	Glutathione reductase {Human (Homo sapiens) [TaxId	99.6
d1nhpa2	123	NADH peroxidase {Enterococcus faecalis [TaxId: 135	99.59
d1lvla1	220	Dihydrolipoamide dehydrogenase {Pseudomonas putida	99.59
d1feca1	240	Trypanothione reductase {Crithidia fasciculata [Ta	99.58
d1h6va1	235	Mammalian thioredoxin reductase {Rat (Rattus norve	99.58
d1xhca2	122	NADH oxidase /nitrite reductase {Pyrococcus furios	99.57
d1fcda1	186	Flavocytochrome c sulfide dehydrogenase, FCSD, fla	99.56
d3lada1	229	Dihydrolipoamide dehydrogenase {Azotobacter vinela	99.54
d1m6ia2	137	Apoptosis-inducing factor (AIF) {Human (Homo sapie	99.53
d1gesa2	116	Glutathione reductase {Escherichia coli [TaxId: 56	99.53
d1ojta1	229	Dihydrolipoamide dehydrogenase {Neisseria meningit	99.47
d1onfa2	117	Glutathione reductase {Plasmodium falciparum [TaxI	99.45
d1vdca1	192	Thioredoxin reductase {Mouse-ear cress (Arabidopsi	99.45
d1feca2	117	Trypanothione reductase {Crithidia fasciculata [Ta	99.44
d1d7ya1	183	NADH-dependent ferredoxin reductase, BphA4 {Pseudo	99.43
d1v59a1	233	Dihydrolipoamide dehydrogenase {Baker's yeast (Sac	99.42
d1mo9a2	121	NADH-dependent 2-ketopropyl coenzyme M oxidoreduct	99.42
d1trba1	190	Thioredoxin reductase {Escherichia coli [TaxId: 56	99.41
d2gqfa1	253	Hypothetical protein HI0933 {Haemophilus influenza	99.39
d1aoga2	117	Trypanothione reductase {Trypanosoma cruzi [TaxId:	99.38
d1ojta2	125	Dihydrolipoamide dehydrogenase {Neisseria meningit	99.38
d3lada2	119	Dihydrolipoamide dehydrogenase {Azotobacter vinela	99.37
d1v59a2	122	Dihydrolipoamide dehydrogenase {Baker's yeast (Sac	99.37
d1xhca1	167	NADH oxidase /nitrite reductase {Pyrococcus furios	99.34
d1q1ra3	103	Putidaredoxin reductase {Pseudomonas putida [TaxId	99.32
d1aoga1	238	Trypanothione reductase {Trypanosoma cruzi [TaxId:	99.31
d1fcda1	186	Flavocytochrome c sulfide dehydrogenase, FCSD, fla	99.31
d1djqa2	156	Trimethylamine dehydrogenase, C-terminal domain {M	99.29
d1dxla2	123	Dihydrolipoamide dehydrogenase {Garden pea (Pisum	99.29
d1d7ya3	97	NADH-dependent ferredoxin reductase, BphA4 {Pseudo	99.29
d1fl2a1	184	Alkyl hydroperoxide reductase subunit F (AhpF), C-	99.28
d1ebda2	117	Dihydrolipoamide dehydrogenase {Bacillus stearothe	99.28
d1lvla2	115	Dihydrolipoamide dehydrogenase {Pseudomonas putida	99.27
d1gesa1	217	Glutathione reductase {Escherichia coli [TaxId: 56	99.27
d3grsa2	125	Glutathione reductase {Human (Homo sapiens) [TaxId	99.25
d1gesa2	116	Glutathione reductase {Escherichia coli [TaxId: 56	99.24
d2iida1	370	L-aminoacid oxidase {Malayan pit viper (Calloselas	99.21
d1d7ya2	121	NADH-dependent ferredoxin reductase, BphA4 {Pseudo	99.21
d1h6va2	122	Mammalian thioredoxin reductase {Rat (Rattus norve	99.21
d2i0za1	251	Flavoprotein BC4706 {Bacillus cereus [TaxId: 1396]	99.2
d1q1ra2	133	Putidaredoxin reductase {Pseudomonas putida [TaxId	99.19
d1onfa1	259	Glutathione reductase {Plasmodium falciparum [TaxI	99.16
d1gesa1	217	Glutathione reductase {Escherichia coli [TaxId: 56	99.12
d1lvla2	115	Dihydrolipoamide dehydrogenase {Pseudomonas putida	99.12
d1feca2	117	Trypanothione reductase {Crithidia fasciculata [Ta	99.1
d1ps9a2	162	2,4-dienoyl-CoA reductase, C-terminal domain {Esch	99.09
d1q1ra1	185	Putidaredoxin reductase {Pseudomonas putida [TaxId	99.05
d1y0pa2	308	Flavocytochrome c3 (respiratory fumarate reductase	99.05
d3lada2	119	Dihydrolipoamide dehydrogenase {Azotobacter vinela	99.04
d1aoga2	117	Trypanothione reductase {Trypanosoma cruzi [TaxId:	99.03
d1w4xa1	298	Phenylacetone monooxygenase {Thermobifida fusca [T	99.01
d1m6ia2	137	Apoptosis-inducing factor (AIF) {Human (Homo sapie	99.01
d2i0za1	251	Flavoprotein BC4706 {Bacillus cereus [TaxId: 1396]	99.01
d1xhca2	122	NADH oxidase /nitrite reductase {Pyrococcus furios	99.0
d2gv8a1	335	Flavin-dependent monoxygenase SPBP16F5.08c {Schizo	99.0
d1nhpa2	123	NADH peroxidase {Enterococcus faecalis [TaxId: 135	98.98
d1qo8a2	317	Flavocytochrome c3 (respiratory fumarate reductase	98.96
d1onfa2	117	Glutathione reductase {Plasmodium falciparum [TaxI	98.95
d2bs2a2	336	Fumarate reductase {Wolinella succinogenes [TaxId:	98.94
d2cula1	230	GidA-related protein TTHA1897 {Thermus thermophilu	98.91
d1mo9a2	121	NADH-dependent 2-ketopropyl coenzyme M oxidoreduct	98.9
d2v5za1	383	Monoamine oxidase B {Human (Homo sapiens) [TaxId:	98.9
d1seza1	373	Protoporphyrinogen oxidase {Tobacco (Nicotiana tab	98.89
d1ryia1	276	Glycine oxidase ThiO {Bacillus sp. [TaxId: 1409]}	98.88
d1cjca2	230	Adrenodoxin reductase of mitochondrial p450 system	98.88
d2gmha1	380	Electron transfer flavoprotein-ubiquinone oxidored	98.87
d1onfa1	259	Glutathione reductase {Plasmodium falciparum [TaxI	98.86
d1lqta2	239	Ferredoxin:NADP reductase FprA {Mycobacterium tube	98.86
d1trba1	190	Thioredoxin reductase {Escherichia coli [TaxId: 56	98.85
d1ebda2	117	Dihydrolipoamide dehydrogenase {Bacillus stearothe	98.83
d1h6va2	122	Mammalian thioredoxin reductase {Rat (Rattus norve	98.83
d2gf3a1	281	Sarcosine oxidase {Bacillus sp., strain b0618 [Tax	98.82
d1ojta2	125	Dihydrolipoamide dehydrogenase {Neisseria meningit	98.81
d3grsa2	125	Glutathione reductase {Human (Homo sapiens) [TaxId	98.81
d1v59a2	122	Dihydrolipoamide dehydrogenase {Baker's yeast (Sac	98.8
d2voua1	265	Dihydroxypyridine hydroxylase DhpH {Arthrobacter n	98.78
d1vdca1	192	Thioredoxin reductase {Mouse-ear cress (Arabidopsi	98.75
d1d4ca2	322	Flavocytochrome c3 (respiratory fumarate reductase	98.73
d1lvla1	220	Dihydrolipoamide dehydrogenase {Pseudomonas putida	98.7
d1dxla2	123	Dihydrolipoamide dehydrogenase {Garden pea (Pisum	98.67
d1fl2a2	126	Alkyl hydroperoxide reductase subunit F (AhpF), C-	98.66
d1gtea4	196	Dihydropyrimidine dehydrogenase, domain 2 {Pig (Su	98.65
d2ivda1	347	Protoporphyrinogen oxidase {Myxococcus xanthus [Ta	98.64
d1pj5a2	305	N,N-dimethylglycine oxidase {Arthrobacter globifor	98.64
d1trba2	126	Thioredoxin reductase {Escherichia coli [TaxId: 56	98.63
d1fl2a1	184	Alkyl hydroperoxide reductase subunit F (AhpF), C-	98.6
d1dxla1	221	Dihydrolipoamide dehydrogenase {Garden pea (Pisum	98.59
d1b5qa1	347	Polyamine oxidase {Maize (Zea mays) [TaxId: 4577]}	98.58
d1nhpa1	198	NADH peroxidase {Enterococcus faecalis [TaxId: 135	98.55
d1h6va1	235	Mammalian thioredoxin reductase {Rat (Rattus norve	98.52
d1mo9a1	261	NADH-dependent 2-ketopropyl coenzyme M oxidoreduct	98.48
d1w4xa1	298	Phenylacetone monooxygenase {Thermobifida fusca [T	98.47
d3grsa1	221	Glutathione reductase {Human (Homo sapiens) [TaxId	98.45
d1xdia1	233	Dihydrolipoamide dehydrogenase {Mycobacterium tube	98.44
d1ryia1	276	Glycine oxidase ThiO {Bacillus sp. [TaxId: 1409]}	98.41
d1gtea3	153	Dihydropyrimidine dehydrogenase, domain 3 {Pig (Su	98.38
d1d4ca2	322	Flavocytochrome c3 (respiratory fumarate reductase	98.35
d2bcgg1	297	Guanine nucleotide dissociation inhibitor, GDI {Ba	98.35
d1ps9a3	179	2,4-dienoyl-CoA reductase, middle domain {Escheric	98.35
d1d5ta1	336	Guanine nucleotide dissociation inhibitor, GDI {Co	98.31
d1vdca2	130	Thioredoxin reductase {Mouse-ear cress (Arabidopsi	98.31
d1chua2	305	L-aspartate oxidase {Escherichia coli [TaxId: 562]	98.3
d1kf6a2	311	Fumarate reductase {Escherichia coli [TaxId: 562]}	98.3
d1pj5a2	305	N,N-dimethylglycine oxidase {Arthrobacter globifor	98.28
d1d5ta1	336	Guanine nucleotide dissociation inhibitor, GDI {Co	98.26
d1rp0a1	278	Thiazole biosynthetic enzyme Thi4 {Thale cress(Ara	98.24
d3lada1	229	Dihydrolipoamide dehydrogenase {Azotobacter vinela	98.21
d1c0pa1	268	D-aminoacid oxidase, N-terminal domain {Rhodotorul	98.18
d1b5qa1	347	Polyamine oxidase {Maize (Zea mays) [TaxId: 4577]}	98.14
d2gf3a1	281	Sarcosine oxidase {Bacillus sp., strain b0618 [Tax	98.14
d2dw4a2	449	Lysine-specific histone demethylase 1, LSD1 {Human	98.13
d1seza1	373	Protoporphyrinogen oxidase {Tobacco (Nicotiana tab	98.12
d1i8ta1	298	UDP-galactopyranose mutase, N-terminal domain {Esc	98.11
d1gtea4	196	Dihydropyrimidine dehydrogenase, domain 2 {Pig (Su	98.11
d1v59a1	233	Dihydrolipoamide dehydrogenase {Baker's yeast (Sac	98.09
d1djqa2	156	Trimethylamine dehydrogenase, C-terminal domain {M	98.06
d1ps9a2	162	2,4-dienoyl-CoA reductase, C-terminal domain {Esch	98.05
d2gjca1	311	Thiazole biosynthetic enzyme Thi4 {Baker's yeast (	98.05
d1ojta1	229	Dihydrolipoamide dehydrogenase {Neisseria meningit	98.01
d2bi7a1	314	UDP-galactopyranose mutase, N-terminal domain {Kle	97.99
d2ivda1	347	Protoporphyrinogen oxidase {Myxococcus xanthus [Ta	97.98
d2cula1	230	GidA-related protein TTHA1897 {Thermus thermophilu	97.97
d2gv8a1	335	Flavin-dependent monoxygenase SPBP16F5.08c {Schizo	97.97
d1ebda1	223	Dihydrolipoamide dehydrogenase {Bacillus stearothe	97.93
d1k0ia1	292	p-Hydroxybenzoate hydroxylase, PHBH {Pseudomonas a	97.93
d2voua1	265	Dihydroxypyridine hydroxylase DhpH {Arthrobacter n	97.92
d1aoga1	238	Trypanothione reductase {Trypanosoma cruzi [TaxId:	97.92
d2bcgg1	297	Guanine nucleotide dissociation inhibitor, GDI {Ba	97.92
d1cjca1	225	Adrenodoxin reductase of mitochondrial p450 system	97.91
d1w4xa2	235	Phenylacetone monooxygenase {Thermobifida fusca [T	97.81
d1kf6a2	311	Fumarate reductase {Escherichia coli [TaxId: 562]}	97.8
d3c96a1	288	Monooxygenase PhzS {Pseudomonas aeruginosa [TaxId:	97.74
d1gtea3	153	Dihydropyrimidine dehydrogenase, domain 3 {Pig (Su	97.7
d2gv8a2	107	Flavin-dependent monoxygenase SPBP16F5.08c {Schizo	97.63
d1pn0a1	360	Phenol hydroxylase {Soil-living yeast (Trichosporo	97.61
d1lqta1	216	Ferredoxin:NADP reductase FprA {Mycobacterium tube	97.61
d2f5va1	379	Pyranose 2-oxidase {White-rot fungus (Peniophora s	97.6
d1neka2	330	Succinate dehydogenase {Escherichia coli [TaxId: 5	97.58
d1neka2	330	Succinate dehydogenase {Escherichia coli [TaxId: 5	97.58
d3c96a1	288	Monooxygenase PhzS {Pseudomonas aeruginosa [TaxId:	97.5
d1jnra2	356	Adenylylsulfate reductase A subunit {Archaeon Arch	97.3
d1trba2	126	Thioredoxin reductase {Escherichia coli [TaxId: 56	97.29
d1fl2a2	126	Alkyl hydroperoxide reductase subunit F (AhpF), C-	97.28
d1chua2	305	L-aspartate oxidase {Escherichia coli [TaxId: 562]	97.27
d2f5va1	379	Pyranose 2-oxidase {White-rot fungus (Peniophora s	97.26
d1k0ia1	292	p-Hydroxybenzoate hydroxylase, PHBH {Pseudomonas a	97.25
d3coxa1	370	Cholesterol oxidase of GMC family {Brevibacterium	97.2
d1v59a3	123	Dihydrolipoamide dehydrogenase {Baker's yeast (Sac	97.19
d1n4wa1	367	Cholesterol oxidase of GMC family {Streptomyces sp	97.11
d1kdga1	360	Flavoprotein domain of flavocytochrome cellobiose	97.09
d2gv8a2	107	Flavin-dependent monoxygenase SPBP16F5.08c {Schizo	97.01
d3lada3	124	Dihydrolipoamide dehydrogenase {Azotobacter vinela	96.92
d1gpea1	391	Glucose oxidase {Penicillium amagasakiense [TaxId:	96.89
d1cjca2	230	Adrenodoxin reductase of mitochondrial p450 system	96.89
d1kifa1	246	D-aminoacid oxidase, N-terminal domain {Pig (Sus s	96.88
d1vdca2	130	Thioredoxin reductase {Mouse-ear cress (Arabidopsi	96.86
d1djqa3	233	Trimethylamine dehydrogenase, middle domain {Methy	96.85
d1dxla3	123	Dihydrolipoamide dehydrogenase {Garden pea (Pisum	96.78
d1cf3a1	385	Glucose oxidase {Aspergillus niger [TaxId: 5061]}	96.74
d1xdia2	118	Dihydrolipoamide dehydrogenase {Mycobacterium tube	96.73
d1lvla3	123	Dihydrolipoamide dehydrogenase {Pseudomonas putida	96.67
d1gtea1	182	Dihydropyrimidine dehydrogenase, N-terminal domain	96.64
d1m6ia3	131	Apoptosis-inducing factor (AIF) {Human (Homo sapie	96.63
d1ju2a1	351	Hydroxynitrile lyase {Almond (Prunus dulcis) [TaxI	96.59
d2jfga1	93	UDP-N-acetylmuramoyl-L-alanine:D-glutamate ligase	96.57
d2gjca1	311	Thiazole biosynthetic enzyme Thi4 {Baker's yeast (	96.46
d1ojta3	128	Dihydrolipoamide dehydrogenase {Neisseria meningit	96.46
d1ebda3	115	Dihydrolipoamide dehydrogenase {Bacillus stearothe	96.37
d1lqta2	239	Ferredoxin:NADP reductase FprA {Mycobacterium tube	96.23
d1c0pa1	268	D-aminoacid oxidase, N-terminal domain {Rhodotorul	96.17
d1jnra2	356	Adenylylsulfate reductase A subunit {Archaeon Arch	95.99
d1e5qa1	182	Saccharopine reductase {Rice blast fungus (Magnapo	95.92
d1n4wa1	367	Cholesterol oxidase of GMC family {Streptomyces sp	95.92
d1rp0a1	278	Thiazole biosynthetic enzyme Thi4 {Thale cress(Ara	95.46
d1bg6a2	184	N-(1-D-carboxylethyl)-L-norvaline dehydrogenase {A	95.33
d3coxa1	370	Cholesterol oxidase of GMC family {Brevibacterium	95.31
d1pzga1	154	Lactate dehydrogenase {Toxoplasma gondii [TaxId: 5	95.28
d1kyqa1	150	Bifunctional dehydrogenase/ferrochelatase Met8p, N	95.27
d1w4xa2	235	Phenylacetone monooxygenase {Thermobifida fusca [T	95.1
d1pjqa1	113	Siroheme synthase CysG, domain 1 {Salmonella typhi	95.09
d1l7da1	183	Nicotinamide nucleotide transhydrogenase dI compon	95.05
d1pjca1	168	L-alanine dehydrogenase {Phormidium lapideum [TaxI	95.03
d2hmva1	134	Ktn bsu222 {Bacillus subtilis [TaxId: 1423]}	94.94
d1ez4a1	146	Lactate dehydrogenase {Lactobacillus pentosus [Tax	94.87
d2jfga1	93	UDP-N-acetylmuramoyl-L-alanine:D-glutamate ligase	94.82
d1m6ia1	213	Apoptosis-inducing factor (AIF) {Human (Homo sapie	94.73
d1a9xa3	127	Carbamoyl phosphate synthetase (CPS), large subuni	94.68
d1lssa_	132	Ktn Mja218 {Archaeon Methanococcus jannaschii [Tax	94.63
d1kdga1	360	Flavoprotein domain of flavocytochrome cellobiose	94.18
d2dw4a2	449	Lysine-specific histone demethylase 1, LSD1 {Human	94.14
d3grsa3	115	Glutathione reductase {Human (Homo sapiens) [TaxId	94.1
d1onfa3	119	Glutathione reductase {Plasmodium falciparum [TaxI	94.05
d1ldna1	148	Lactate dehydrogenase {Bacillus stearothermophilus	93.93
d1bg6a2	184	N-(1-D-carboxylethyl)-L-norvaline dehydrogenase {A	93.89
d1pjqa1	113	Siroheme synthase CysG, domain 1 {Salmonella typhi	93.86
d1f0ya2	192	Short chain L-3-hydroxyacyl CoA dehydrogenase {Hum	93.84
d2iida1	370	L-aminoacid oxidase {Malayan pit viper (Calloselas	93.8
d1a9xa4	121	Carbamoyl phosphate synthetase (CPS), large subuni	93.7
d1ks9a2	167	Ketopantoate reductase PanE {Escherichia coli [Tax	93.48
d1gesa3	115	Glutathione reductase {Escherichia coli [TaxId: 56	93.33
d2gqfa1	253	Hypothetical protein HI0933 {Haemophilus influenza	93.31
d1j6ua1	89	UDP-N-acetylmuramate-alanine ligase MurC {Thermoto	93.2
d2pv7a2	152	Prephenate dehydrogenase TyrA {Haemophilus influen	93.17
d1fcda2	141	Flavocytochrome c sulfide dehydrogenase, FCSD, fla	93.16
d1i0za1	160	Lactate dehydrogenase {Human (Homo sapiens), heart	93.1
d1hyha1	146	L-2-hydroxyisocapronate dehydrogenase, L-HICDH {La	93.05
d2ldxa1	159	Lactate dehydrogenase {Mouse (Mus musculus) [TaxId	92.76
d1kjqa2	111	Glycinamide ribonucleotide transformylase PurT, N-	92.72
d1fcda2	141	Flavocytochrome c sulfide dehydrogenase, FCSD, fla	92.58
d1kyqa1	150	Bifunctional dehydrogenase/ferrochelatase Met8p, N	92.45
d1y6ja1	142	Lactate dehydrogenase {Clostridium thermocellum [T	92.44
d1wdka3	186	Fatty oxidation complex alpha subunit, middle doma	92.4
d1n1ea2	189	Glycerol-3- phosphate dehydrogenase {Trypanosome (	92.38
d2bi7a1	314	UDP-galactopyranose mutase, N-terminal domain {Kle	92.37
d1feca3	128	Trypanothione reductase {Crithidia fasciculata [Ta	92.25
d1llda1	143	Lactate dehydrogenase {Bifidobacterium longum, str	92.11
d1h6va3	133	Mammalian thioredoxin reductase {Rat (Rattus norve	92.07
d2g5ca2	171	Prephenate dehydrogenase TyrA {Aquifex aeolicus [T	91.83
d1npya1	167	Shikimate 5-dehydrogenase-like protein HI0607 {Hae	91.64
d1p3da1	96	UDP-N-acetylmuramate-alanine ligase MurC {Haemophi	91.63
d1cf3a1	385	Glucose oxidase {Aspergillus niger [TaxId: 5061]}	91.3
d1uxja1	142	Malate dehydrogenase {Chloroflexus aurantiacus [Ta	90.96
d1kjqa2	111	Glycinamide ribonucleotide transformylase PurT, N-	90.82
d1hdoa_	205	Biliverdin IX beta reductase {Human (Homo sapiens)	90.81
d1guza1	142	Malate dehydrogenase {Chlorobium vibrioforme [TaxI	90.78
d3etja2	78	N5-carboxyaminoimidazole ribonucleotide synthetase	90.71
d1gpea1	391	Glucose oxidase {Penicillium amagasakiense [TaxId:	90.63
d1mv8a2	202	GDP-mannose 6-dehydrogenase {Pseudomonas aeruginos	90.6
d1nyta1	170	Shikimate 5-dehydrogenase AroE {Escherichia coli [	90.14
d1id1a_	153	Rck domain from putative potassium channel Kch {Es	90.14
d1vi2a1	182	Putative shikimate dehydrogenase YdiB {Escherichia	89.54
d1mlda1	144	Malate dehydrogenase {Pig (Sus scrofa) [TaxId: 982	89.48
d1ojua1	142	Malate dehydrogenase {Archaeon Archaeoglobus fulgi	89.17
d1t2da1	150	Lactate dehydrogenase {Malaria parasite (Plasmodiu	88.99
d1a5za1	140	Lactate dehydrogenase {Thermotoga maritima [TaxId:	88.98
d1i8ta1	298	UDP-galactopyranose mutase, N-terminal domain {Esc	88.79
d1gpja2	159	Glutamyl tRNA-reductase middle domain {Archaeon Me	88.22
d1e5qa1	182	Saccharopine reductase {Rice blast fungus (Magnapo	88.2
d1jw9b_	247	Molybdenum cofactor biosynthesis protein MoeB {Esc	88.14
d1hyea1	145	MJ0490, lactate/malate dehydrogenase {Archaeon Met	88.14
d1lssa_	132	Ktn Mja218 {Archaeon Methanococcus jannaschii [Tax	87.99
d2f1ka2	165	Prephenate dehydrogenase TyrA {Synechocystis sp. p	87.79
d2hmva1	134	Ktn bsu222 {Bacillus subtilis [TaxId: 1423]}	87.55
d1txga2	180	Glycerol-3- phosphate dehydrogenase {Archaeoglobus	87.41
d1pl8a2	171	Ketose reductase (sorbitol dehydrogenase) {Human (	86.85
d1o6za1	142	Malate dehydrogenase {Archaeon Haloarcula marismor	86.24
d1ju2a1	351	Hydroxynitrile lyase {Almond (Prunus dulcis) [TaxI	86.11
d1qyca_	307	Phenylcoumaran benzylic ether reductase {Loblolly	85.67
d1kifa1	246	D-aminoacid oxidase, N-terminal domain {Pig (Sus s	85.65
d1vl6a1	222	Malate oxidoreductase (malic enzyme) {Thermotoga m	85.19
d1piwa2	168	Cinnamyl alcohol dehydrogenase, ADH6 {Baker's yeas	85.06
d1jqba2	174	Bacterial secondary alcohol dehydrogenase {Clostri	84.98
d1f0ya2	192	Short chain L-3-hydroxyacyl CoA dehydrogenase {Hum	84.95
d1llua2	166	Alcohol dehydrogenase {Pseudomonas aeruginosa [Tax	84.58
d1mo9a3	140	NADH-dependent 2-ketopropyl coenzyme M oxidoreduct	84.36
d1lqta1	216	Ferredoxin:NADP reductase FprA {Mycobacterium tube	84.28
d1qyda_	312	Pinoresinol-lariciresinol reductase {Giant arborvi	84.04
d1l7da1	183	Nicotinamide nucleotide transhydrogenase dI compon	83.9
d1e3ja2	170	Ketose reductase (sorbitol dehydrogenase) {Silverl	83.78
d1ks9a2	167	Ketopantoate reductase PanE {Escherichia coli [Tax	83.34
d1nhpa3	126	NADH peroxidase {Enterococcus faecalis [TaxId: 135	83.31
d2cmda1	145	Malate dehydrogenase {Escherichia coli [TaxId: 562	83.23
d2g5ca2	171	Prephenate dehydrogenase TyrA {Aquifex aeolicus [T	83.19
d1e3ia2	174	Alcohol dehydrogenase {Mouse (Mus musculus), class	83.17
d1p77a1	171	Shikimate 5-dehydrogenase AroE {Haemophilus influe	82.67
d1wdka3	186	Fatty oxidation complex alpha subunit, middle doma	82.52
d1vj0a2	182	Hypothetical protein TM0436 {Thermotoga maritima [	82.46
d2v5za1	383	Monoamine oxidase B {Human (Homo sapiens) [TaxId:	82.22
d1cjca1	225	Adrenodoxin reductase of mitochondrial p450 system	81.91
d1jaya_	212	Coenzyme F420H2:NADP+ oxidoreductase (FNO) {Archae	81.59
d1p3da1	96	UDP-N-acetylmuramate-alanine ligase MurC {Haemophi	81.55
d1xhca3	62	NADH oxidase /nitrite reductase {Pyrococcus furios	81.48
d1pn0a1	360	Phenol hydroxylase {Soil-living yeast (Trichosporo	81.36
d3cuma2	162	Hydroxyisobutyrate dehydrogenase {Pseudomonas aeru	81.09
d3etja2	78	N5-carboxyaminoimidazole ribonucleotide synthetase	80.87
d1d1ta2	176	Alcohol dehydrogenase {Human (Homo sapiens), diffe	80.76
d1uufa2	168	Hypothetical protein YahK {Escherichia coli [TaxId	80.62
d1kola2	195	Formaldehyde dehydrogenase {Pseudomonas putida [Ta	80.42
d1y0pa2	308	Flavocytochrome c3 (respiratory fumarate reductase	80.23
d1dlja2	196	UDP-glucose dehydrogenase (UDPGDH) {Streptococcus	80.11

>d1m6ia1 c.3.1.5 (A:128-263,A:401-477) Apoptosis-inducing factor (AIF) {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Apoptosis-inducing factor (AIF)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.92  E-value=2.2e-25  Score=200.10  Aligned_cols=204  Identities=28%  Similarity=0.399  Sum_probs=146.4

Q ss_pred             CCCCcEEEEcCcHHHHHHHHHHHHcCCCCCcEEEEcCCCCCCCCCCCCcccccCCCCCCCCCCCCCccccCCCCCCCCHh
Q 012165           49 NENREFVIVGGGNAAGYAARTFVEHGMADGRLCIVSKEAYAPYERPALTKGYLFPLDKKPARLPGFHTCVGSGGERQTPE  128 (469)
Q Consensus        49 ~~~~~vvIIGgG~AGl~aA~~L~~~g~~~~~V~vie~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  128 (469)
                      ++++++||||||++|+.+|.+|+++++ +.+|++|++++++||+||+|++.++.......                    
T Consensus         2 p~~~~~vIvG~G~aG~~~A~~Lr~~~~-~~~I~li~~e~~~py~r~~Ls~~~~~~~~~~~--------------------   60 (213)
T d1m6ia1           2 PSHVPFLLIGGGTAAFAAARSIRARDP-GARVLIVSEDPELPYMRPPLSKELWFSDDPNV--------------------   60 (213)
T ss_dssp             CSEEEEEEESCSHHHHHHHHHHHHHST-TCEEEEEESSSSCCBCSGGGGTGGGCC--CTH--------------------
T ss_pred             CCCCCEEEECCcHHHHHHHHHHHhcCC-CCcEEEEeCCCCCCccccccceecccccCchh--------------------
Confidence            356789999999999999999999987 78999999999999999999986553321110                    


Q ss_pred             HHHHCCcEEEeCCcEEEEeCCCcEEEeCCCeEEEeccEEeccCCCCCcCCCCCCCCcCcEEEecCHHHHHHHHHhhhcCC
Q 012165          129 WYKEKGIEMIYQDPVTSIDIEKQTLITNSGKLLKYGSLIVATGCTASRFPEKIGGYLPGVHYIRDVADADALISSLEKAK  208 (469)
Q Consensus       129 ~~~~~~i~~~~~~~v~~id~~~~~v~~~~g~~~~yd~lVlAtG~~~~~~~~~~g~~~~~v~~~~~~~~~~~~~~~~~~~~  208 (469)
                       ....  .+.......      ..+.+...+               .....                             
T Consensus        61 -~~~~--~~~~~~~~~------~~~~~~~~~---------------~~~~~-----------------------------   87 (213)
T d1m6ia1          61 -TKTL--RFKQWNGKE------RSIYFQPPS---------------FYVSA-----------------------------   87 (213)
T ss_dssp             -HHHC--EEECTTSCE------EESBSSCGG---------------GSBCT-----------------------------
T ss_pred             -hhhh--hhhhcccch------hhhhcCChh---------------hhhhh-----------------------------
Confidence             1111  111110000      011111111               00000                             


Q ss_pred             eEEEEcCChHHHHHHHHHHhCCCeEeeeHHHHHHcCcEEEcCCeEEEEEeCCCCcEEEEEcCCCCEEeCCEEEEccCCcc
Q 012165          209 KVVVVGGGYIGMEVAAAAVGWKLDTTRYEQLYQQNGVKFVKGASIKNLEAGSDGRVAAVKLEDGSTIDADTIVIGIGAKP  288 (469)
Q Consensus       209 ~vvVvG~G~~g~e~A~~l~~~g~~v~~~~~~l~~~gV~~~~~~~v~~i~~~~~~~v~~v~~~~g~~i~~D~vi~a~G~~p  288 (469)
                                                .....+++.||+++++++|++|+.+ +.   .|+++||+++++|.+|+|+|..|
T Consensus        88 --------------------------~~~~~~~~~gI~~~~g~~V~~id~~-~~---~V~l~dG~~i~~d~lViAtG~~~  137 (213)
T d1m6ia1          88 --------------------------QDLPHIENGGVAVLTGKKVVQLDVR-DN---MVKLNDGSQITYEKCLIATGGTE  137 (213)
T ss_dssp             --------------------------TTTTTSTTCEEEEEETCCEEEEEGG-GT---EEEETTSCEEEEEEEEECCCEEE
T ss_pred             --------------------------hhHHHHHHCCeEEEeCCEEEEeecc-Cc---eeeeccceeeccceEEEeeeeec
Confidence                                      0001345678999999999999753 22   57899999999999999999765


Q ss_pred             C-CchhhhcCCccc--CCCEEeCCCCCCCCCceEEeccccccCCccCCcccccchHHHHHHHHHHHHHHHhcC
Q 012165          289 T-VSPFERVGLNSS--VGGIQVDGQFRTRMPGIFAIGDVAAFPLKMYDRTARVEHVDHARQSAQHCIKALLSA  358 (469)
Q Consensus       289 ~-~~~~~~~gl~~~--~g~i~Vd~~~~t~~~~Vfa~GD~a~~~~~~~~~~~~~~~~~~A~~~a~~~a~~i~~~  358 (469)
                      + +++....++..+  .++|.||++|||+ |+|||+|||+.++....+. .++++|+.|+.||+.+|+||++.
T Consensus       138 ~~~~l~~~~gl~~~~~~~~i~vd~~l~~~-~~VyA~GD~a~~~~~~~g~-~~i~~~~~A~~~gr~aa~ni~g~  208 (213)
T d1m6ia1         138 PNVELAKTGGLEIDSDFGGFRVNAELQAR-SNIWVAGDAACFYDIKLGR-RRVEHHDHAVVSGRLAGENMTGA  208 (213)
T ss_dssp             ECCTTHHHHTCCBCTTTCSEECCTTCEEE-TTEEECGGGEEEEETTTEE-ECCCCHHHHHHHHHHHHHHHTSC
T ss_pred             chhhhhhccchhhhhhhhhhhhhHhcCcC-CceEEeeeeeeeccccCCc-EEeeEhHHHHHHHHHHHHHhcCC
Confidence            4 456677777653  5789999999998 9999999999988765554 46889999999999999999974

>d1nhpa1 c.3.1.5 (A:1-119,A:243-321) NADH peroxidase {Enterococcus faecalis [TaxId: 1351]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: NADH peroxidase
species: Enterococcus faecalis [TaxId: 1351]

Probab=99.90  E-value=1e-23  Score=187.15  Aligned_cols=186  Identities=19%  Similarity=0.313  Sum_probs=142.4

Q ss_pred             cEEEEcCcHHHHHHHHHHHHcCCCCCcEEEEcCCCCCCCCCCCCcccccCCCCCCCCCCCCCccccCCCCCCCCHhHHHH
Q 012165           53 EFVIVGGGNAAGYAARTFVEHGMADGRLCIVSKEAYAPYERPALTKGYLFPLDKKPARLPGFHTCVGSGGERQTPEWYKE  132 (469)
Q Consensus        53 ~vvIIGgG~AGl~aA~~L~~~g~~~~~V~vie~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  132 (469)
                      +|+|||||++|+.+|..|++.+. +.+|++++++++..|..+.++. ++.........+           .....+.+++
T Consensus         2 KVvIIGgG~~G~e~A~~l~~~~~-~~~V~v~~~~~~~~~~~~~~~~-~l~~~~~~~~~~-----------~~~~~~~l~~   68 (198)
T d1nhpa1           2 KVIVLGSSHGGYEAVEELLNLHP-DAEIQWYEKGDFISFLSAGMQL-YLEGKVKDVNSV-----------RYMTGEKMES   68 (198)
T ss_dssp             EEEEECSSHHHHHHHHHHHHHCT-TSEEEEEESSSSSSBCGGGHHH-HHTTSSCCGGGS-----------BSCCHHHHHH
T ss_pred             EEEEECCcHHHHHHHHHHHhcCC-CCeEEEEeCCCcccccccCcch-hhcccccchHHH-----------HHhhHHHHHH
Confidence            59999999999999999999875 7799999999887777555543 222211111111           2345678899


Q ss_pred             CCcEEEeCCcEEEEeCCCcEEEeC---CCe--EEEeccEEeccCCCCCcCCCCCCCCcCcEEEecCHHHHHHHHHhhhcC
Q 012165          133 KGIEMIYQDPVTSIDIEKQTLITN---SGK--LLKYGSLIVATGCTASRFPEKIGGYLPGVHYIRDVADADALISSLEKA  207 (469)
Q Consensus       133 ~~i~~~~~~~v~~id~~~~~v~~~---~g~--~~~yd~lVlAtG~~~~~~~~~~g~~~~~v~~~~~~~~~~~~~~~~~~~  207 (469)
                      .|++++++++|.++|.+++.|++.   +|+  .+.||+||+|+|+.+..+        .                     
T Consensus        69 ~gi~v~~~~~V~~i~~~~~~v~~~~~~~g~~~~~~~D~li~a~G~~~~~~--------~---------------------  119 (198)
T d1nhpa1          69 RGVNVFSNTEITAIQPKEHQVTVKDLVSGEERVENYDKLIISPGAVPFEL--------D---------------------  119 (198)
T ss_dssp             TTCEEEETEEEEEEETTTTEEEEEETTTCCEEEEECSEEEECCCEEECCC--------C---------------------
T ss_pred             CCcEEEEeeceeeEeeccccceeeecccccccccccceeeEeecceeecc--------c---------------------
Confidence            999999999999999998887643   343  578999999999876421        1                     


Q ss_pred             CeEEEEcCChHHHHHHHHHHhCCCeEeeeHHHHHHcCcEEEcCCeEEEEEeCCCCcEEEEEcCCCCEEeCCEEEEccCCc
Q 012165          208 KKVVVVGGGYIGMEVAAAAVGWKLDTTRYEQLYQQNGVKFVKGASIKNLEAGSDGRVAAVKLEDGSTIDADTIVIGIGAK  287 (469)
Q Consensus       208 ~~vvVvG~G~~g~e~A~~l~~~g~~v~~~~~~l~~~gV~~~~~~~v~~i~~~~~~~v~~v~~~~g~~i~~D~vi~a~G~~  287 (469)
                                                                                                   |..
T Consensus       120 -----------------------------------------------------------------------------g~~  122 (198)
T d1nhpa1         120 -----------------------------------------------------------------------------GVR  122 (198)
T ss_dssp             -----------------------------------------------------------------------------CEE
T ss_pred             -----------------------------------------------------------------------------ccc
Confidence                                                                                         666


Q ss_pred             cCCchhhhcCCcccCCCEEeCCCCCCCCCceEEeccccccCCccCCcccccchHHHHHHHHHHHHHHHhc
Q 012165          288 PTVSPFERVGLNSSVGGIQVDGQFRTRMPGIFAIGDVAAFPLKMYDRTARVEHVDHARQSAQHCIKALLS  357 (469)
Q Consensus       288 p~~~~~~~~gl~~~~g~i~Vd~~~~t~~~~Vfa~GD~a~~~~~~~~~~~~~~~~~~A~~~a~~~a~~i~~  357 (469)
                      |++.+++......++|+|.||+++||+.|+|||+|||+..+....+....++++..|.++|+.+|+||.+
T Consensus       123 ~~~~~~~~~~~~~~~G~i~vd~~~~T~~~~IyA~GD~a~~~~~~~~~~~~~~~a~~A~~~g~~aa~ni~~  192 (198)
T d1nhpa1         123 PNTAWLKGTLELHPNGLIKTDEYMRTSEPDVFAVGDATLIKYNPADTEVNIALATNARKQGRFAVKNLEE  192 (198)
T ss_dssp             ESCGGGTTTSCBCTTSCBCCCTTCBCSSTTEEECGGGSCEEEGGGTEEECCCCHHHHHHHHHHHHHTSSS
T ss_pred             cccccccccceeccCCceecCCcccccccceEEecceeecccccCCCcccccHHHHHHHHHHHHHHhhCC
Confidence            7777766632223468899999999999999999999987765555555567888999999999999974

>d1d7ya1 c.3.1.5 (A:5-115,A:237-308) NADH-dependent ferredoxin reductase, BphA4 {Pseudomonas sp., KKS102 [TaxId: 306]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: NADH-dependent ferredoxin reductase, BphA4
species: Pseudomonas sp., KKS102 [TaxId: 306]

Probab=99.88  E-value=1e-22  Score=178.27  Aligned_cols=145  Identities=25%  Similarity=0.354  Sum_probs=120.9

Q ss_pred             CeEEEEcCChHHHHHHHHHHhCCCeEe-----------------------------eeHHHHHHcCcEEEcCCeEEEEEe
Q 012165          208 KKVVVVGGGYIGMEVAAAAVGWKLDTT-----------------------------RYEQLYQQNGVKFVKGASIKNLEA  258 (469)
Q Consensus       208 ~~vvVvG~G~~g~e~A~~l~~~g~~v~-----------------------------~~~~~l~~~gV~~~~~~~v~~i~~  258 (469)
                      .+|+|||||++|+|+|..|+++|.+++                             .....+...+|+++++..++++..
T Consensus         4 a~VvIIGgG~~G~e~A~~l~~~g~~v~i~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~v~~i~~   83 (183)
T d1d7ya1           4 APVVVLGAGLASVSFVAELRQAGYQGLITVVGDEAERPYDRPPLSKDFMAHGDAEKIRLDCKRAPEVEWLLGVTAQSFDP   83 (183)
T ss_dssp             SSEEEECCSHHHHHHHHHHHHHTCCSCEEEEESSCSCCBCSGGGGTTHHHHCCGGGSBCCGGGSTTCEEEETCCEEEEET
T ss_pred             CCEEEECccHHHHHHHHHHHhcCCceEEEEEecccccchhhHHHhhhhhhhhhhhhHHHHHhhcCCeEEEEecccccccc
Confidence            469999999999999999999887765                             011233456999999999999974


Q ss_pred             CCCCcEEEEEcCCCCEEeCCEEEEccCCccCCc-----hhhhcCCcccCCCEEeCCCCCCCCCceEEeccccccCCccCC
Q 012165          259 GSDGRVAAVKLEDGSTIDADTIVIGIGAKPTVS-----PFERVGLNSSVGGIQVDGQFRTRMPGIFAIGDVAAFPLKMYD  333 (469)
Q Consensus       259 ~~~~~v~~v~~~~g~~i~~D~vi~a~G~~p~~~-----~~~~~gl~~~~g~i~Vd~~~~t~~~~Vfa~GD~a~~~~~~~~  333 (469)
                      .  ..  .+.+++|+++++|.+|+|+|..|++.     +....++..+ ++|.||+++||+.|+|||+|||+..+....|
T Consensus        84 ~--~~--~~~~~~g~~~~~D~vi~a~G~~p~~~~~~~~~~~~~gl~~~-~~I~vd~~~~ts~~~IyA~GD~a~~~~~~~g  158 (183)
T d1d7ya1          84 Q--AH--TVALSDGRTLPYGTLVLATGAAPRAVLANDALARAAGLACD-DGIFVDAYGRTTCPDVYALGDVTRQRNPLSG  158 (183)
T ss_dssp             T--TT--EEEETTSCEEECSEEEECCCEEECCEEECCHHHHHTTCCBS-SSEECCTTCBCSSTTEEECGGGEEEECTTTC
T ss_pred             c--cc--eeEecCCcEeeeeeEEEEEEEEcccccccccccceeeEeeC-CcEEeccceeccccccchhhhhhccceeeCC
Confidence            3  22  46789999999999999999999764     3456677665 6799999999999999999999998887777


Q ss_pred             cccccchHHHHHHHHHHHHHHHhc
Q 012165          334 RTARVEHVDHARQSAQHCIKALLS  357 (469)
Q Consensus       334 ~~~~~~~~~~A~~~a~~~a~~i~~  357 (469)
                      ...++++|+.|..||+.+|+||+.
T Consensus       159 ~~~~~~~~~~A~~qg~~aa~nil~  182 (183)
T d1d7ya1         159 RFERIETWSNAQNQGIAVARHLVD  182 (183)
T ss_dssp             SEEECCCHHHHHHHHHHHHHHHHC
T ss_pred             ceechhHHHHHHHHHHHHHHHHcC
Confidence            777788999999999999999984

>d1q1ra1 c.3.1.5 (A:2-114,A:248-319) Putidaredoxin reductase {Pseudomonas putida [TaxId: 303]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Putidaredoxin reductase
species: Pseudomonas putida [TaxId: 303]

Probab=99.85  E-value=3.9e-21  Score=168.23  Aligned_cols=147  Identities=29%  Similarity=0.485  Sum_probs=124.9

Q ss_pred             cCCeEEEEcCChHHHHHHHHHHhCCCeEe---------------------------------eeHHHHHHcCcEEEcCCe
Q 012165          206 KAKKVVVVGGGYIGMEVAAAAVGWKLDTT---------------------------------RYEQLYQQNGVKFVKGAS  252 (469)
Q Consensus       206 ~~~~vvVvG~G~~g~e~A~~l~~~g~~v~---------------------------------~~~~~l~~~gV~~~~~~~  252 (469)
                      ..++|+|||||++|+|+|..|++++.+++                                 .........++.+..+..
T Consensus         2 ~~~~VvIIGgG~~G~e~A~~l~~~g~~v~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   81 (185)
T d1q1ra1           2 ANDNVVIVGTGLAGVEVAFGLRASGWEGNIRLVGDATVIPHHLPPLSKAYLAGKATAESLYLRTPDAYAAQNIQLLGGTQ   81 (185)
T ss_dssp             CSCEEEEECCSHHHHHHHHHHHHTTCCSEEEEECSCCSCCBCSGGGGTTTTTTCSCSGGGBSSCHHHHHHTTEEEECSCC
T ss_pred             CCCCEEEECCcHHHHHHHHHHHHcCCceEEEEecCccccchhhhHHHHHHHHhhhhhhhhhhhhhhhhcccceeeeccce
Confidence            36799999999999999999999998765                                 335667778888888888


Q ss_pred             EEEEEeCCCCcEEEEEcCCCCEEeCCEEEEccCCcc---CCchhhhcCCcccCCCEEeCCCCCCCCCceEEeccccccCC
Q 012165          253 IKNLEAGSDGRVAAVKLEDGSTIDADTIVIGIGAKP---TVSPFERVGLNSSVGGIQVDGQFRTRMPGIFAIGDVAAFPL  329 (469)
Q Consensus       253 v~~i~~~~~~~v~~v~~~~g~~i~~D~vi~a~G~~p---~~~~~~~~gl~~~~g~i~Vd~~~~t~~~~Vfa~GD~a~~~~  329 (469)
                      +..+... ..   .+...++.++++|.+++++|.+|   +..+++..++..+ +++.||++|||++|+|||+|||+..+.
T Consensus        82 ~~~~~~~-~~---~v~~~~~~~i~~d~~i~~~G~~~~~~~~~~~~~~~~~~~-~~i~Vd~~~~ts~~~vya~GD~~~~~~  156 (185)
T d1q1ra1          82 VTAINRD-RQ---QVILSDGRALDYDRLVLATGGRPLIPNCELASAAGLQVD-NGIVINEHMQTSDPLIMAVGDCARFHS  156 (185)
T ss_dssp             EEEEETT-TT---EEEETTSCEEECSEEEECCCEEEEEECCHHHHHTTCCBS-SSEECCTTSBCSSTTEEECGGGEEEEE
T ss_pred             eeeeccc-cc---EEEeeceeEEEeeeeeeeeecccCCCCchhHHhCCcccc-CccccCCccccchhhhhcchhhhcccc
Confidence            8888732 22   46788899999999999999876   4556677777765 789999999999999999999999988


Q ss_pred             ccCCcccccchHHHHHHHHHHHHHHHhc
Q 012165          330 KMYDRTARVEHVDHARQSAQHCIKALLS  357 (469)
Q Consensus       330 ~~~~~~~~~~~~~~A~~~a~~~a~~i~~  357 (469)
                      ...+...++++|+.|.+||+.+|+||+|
T Consensus       157 ~~~~~~~~~~~a~~A~~~g~~aa~~i~G  184 (185)
T d1q1ra1         157 QLYDRWVRIESVPNALEQARKIAAILCG  184 (185)
T ss_dssp             TTTTEEEECCSHHHHHHHHHHHHHHHTT
T ss_pred             ccCCcccchhhHHHHHHHHHHHHHHccC
Confidence            7777777788999999999999999986

>d1xhca1 c.3.1.5 (A:1-103,A:226-289) NADH oxidase /nitrite reductase {Pyrococcus furiosus [TaxId: 2261]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: NADH oxidase /nitrite reductase
species: Pyrococcus furiosus [TaxId: 2261]

Probab=99.83  E-value=1.7e-20  Score=161.32  Aligned_cols=136  Identities=26%  Similarity=0.404  Sum_probs=112.8

Q ss_pred             CeEEEEcCChHHHHHHHHHHhCCCeEe------------------------------eeHHHHHHcCcEEEcCCeEEEEE
Q 012165          208 KKVVVVGGGYIGMEVAAAAVGWKLDTT------------------------------RYEQLYQQNGVKFVKGASIKNLE  257 (469)
Q Consensus       208 ~~vvVvG~G~~g~e~A~~l~~~g~~v~------------------------------~~~~~l~~~gV~~~~~~~v~~i~  257 (469)
                      .||+|||+|++|+|+|..|++ +.+++                              ...+.+++.++++++++.++.++
T Consensus         1 ~rVvIIGgG~~G~e~A~~l~~-~~~Vtvv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~v~~i~   79 (167)
T d1xhca1           1 SKVVIVGNGPGGFELAKQLSQ-TYEVTVIDKEPVPYYSKPMLSHYIAGFIPRNRLFPYSLDWYRKRGIEIRLAEEAKLID   79 (167)
T ss_dssp             CEEEEECCSHHHHHHHHHHTT-TSEEEEECSSSSCCCCSTTHHHHHTTSSCGGGGCSSCHHHHHHHTEEEECSCCEEEEE
T ss_pred             CeEEEECCcHHHHHHHHHHHc-CCCEEEEeccccccccccchhhhhhhhhhhhhhhHHHHHHHHhccceeeeeccccccc
Confidence            379999999999999999975 55665                              33567888999999999999997


Q ss_pred             eCCCCcEEEEEcCCCCEEeCCEEEEccCCccCCchhhhcCCcccCCCEEeCCCCCCCCCceEEeccccccCCccCCcccc
Q 012165          258 AGSDGRVAAVKLEDGSTIDADTIVIGIGAKPTVSPFERVGLNSSVGGIQVDGQFRTRMPGIFAIGDVAAFPLKMYDRTAR  337 (469)
Q Consensus       258 ~~~~~~v~~v~~~~g~~i~~D~vi~a~G~~p~~~~~~~~gl~~~~g~i~Vd~~~~t~~~~Vfa~GD~a~~~~~~~~~~~~  337 (469)
                      .  +..   +.+.+++++++|.+|+++|..|+ .+++..+++.+ ++|.||+++||+.|+|||+|||+..+...      
T Consensus        80 ~--~~~---~~~~~~~~i~~D~li~a~G~~~~-~~~~~~gl~~~-~~i~v~~~~~t~~~~i~aiGD~~~~~~~~------  146 (167)
T d1xhca1          80 R--GRK---VVITEKGEVPYDTLVLATGAPNV-DLARRSGIHTG-RGILIDDNFRTSAKDVYAIGDCAEYSGII------  146 (167)
T ss_dssp             T--TTT---EEEESSCEEECSEEEECCCEECC-HHHHHTTCCBS-SSEECCTTSBCSSTTEEECGGGEEBTTBC------
T ss_pred             c--ccc---cccccccccccceeEEEEEecCC-chhhhcCceeC-CceeeccccEecCCCeEEeeecccCCCeE------
Confidence            3  222   34567778999999999998775 78888899887 46999999999999999999999876543      


Q ss_pred             cchHHHHHHHHHHHHHHHhc
Q 012165          338 VEHVDHARQSAQHCIKALLS  357 (469)
Q Consensus       338 ~~~~~~A~~~a~~~a~~i~~  357 (469)
                      ...+..|+++|+.+|++|+|
T Consensus       147 ~~~~~~a~~~a~~~a~~i~G  166 (167)
T d1xhca1         147 AGTAKAAMEQARVLADILKG  166 (167)
T ss_dssp             CCSHHHHHHHHHHHHHHHTT
T ss_pred             EChHHHHHHHHHHHHHHcCC
Confidence            33567799999999999986

>d1d7ya2 c.3.1.5 (A:116-236) NADH-dependent ferredoxin reductase, BphA4 {Pseudomonas sp., KKS102 [TaxId: 306]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: NADH-dependent ferredoxin reductase, BphA4
species: Pseudomonas sp., KKS102 [TaxId: 306]

Probab=99.72  E-value=2.5e-17  Score=132.47  Aligned_cols=102  Identities=33%  Similarity=0.560  Sum_probs=92.4

Q ss_pred             CCCCCCCCcCcEEEecCHHHHHHHHHhhhcCCeEEEEcCChHHHHHHHHHHhCCCeEe-------------------eeH
Q 012165          177 FPEKIGGYLPGVHYIRDVADADALISSLEKAKKVVVVGGGYIGMEVAAAAVGWKLDTT-------------------RYE  237 (469)
Q Consensus       177 ~~~~~g~~~~~v~~~~~~~~~~~~~~~~~~~~~vvVvG~G~~g~e~A~~l~~~g~~v~-------------------~~~  237 (469)
                      +|++||.+.+ +++++++.|++++.+.+..+++++|||||++|+|+|..|+++|.+++                   .+.
T Consensus         1 iP~ipG~~~~-v~~lrtl~Da~~l~~~~~~~~~vvIIGgG~iG~E~A~~l~~~g~~Vtli~~~~~~l~~~~~~~~~~~~~   79 (121)
T d1d7ya2           1 LPTLQGATMP-VHTLRTLEDARRIQAGLRPQSRLLIVGGGVIGLELAATARTAGVHVSLVETQPRLMSRAAPATLADFVA   79 (121)
T ss_dssp             CGGGTTCSSC-EEECCSHHHHHHHHHHCCTTCEEEEECCSHHHHHHHHHHHHTTCEEEEEESSSSTTTTTSCHHHHHHHH
T ss_pred             CccCCCCCCC-EEEeCCHHHHHHHHHhhhcCCeEEEECcchhHHHHHHHhhcccceEEEEeeccccccccCCHHHHHHHH
Confidence            3667887765 99999999999999999999999999999999999999999999998                   567


Q ss_pred             HHHHHcCcEEEcCCeEEEEEeCCCCcEEEEEcCCCCEEeCCEEEEccC
Q 012165          238 QLYQQNGVKFVKGASIKNLEAGSDGRVAAVKLEDGSTIDADTIVIGIG  285 (469)
Q Consensus       238 ~~l~~~gV~~~~~~~v~~i~~~~~~~v~~v~~~~g~~i~~D~vi~a~G  285 (469)
                      +.++++||++++++.++++..   +   .+.++||++++||+||+|+|
T Consensus        80 ~~l~~~GV~i~~~~~v~~~~~---~---~v~l~dg~~i~~D~vi~a~G  121 (121)
T d1d7ya2          80 RYHAAQGVDLRFERSVTGSVD---G---VVLLDDGTRIAADMVVVGIG  121 (121)
T ss_dssp             HHHHTTTCEEEESCCEEEEET---T---EEEETTSCEEECSEEEECSC
T ss_pred             HHHHHCCcEEEeCCEEEEEeC---C---EEEECCCCEEECCEEEEeeC
Confidence            889999999999999999873   2   47889999999999999998

>d1ebda1 c.3.1.5 (A:7-154,A:272-346) Dihydrolipoamide dehydrogenase {Bacillus stearothermophilus [TaxId: 1422]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Dihydrolipoamide dehydrogenase
species: Bacillus stearothermophilus [TaxId: 1422]

Probab=99.69  E-value=1.2e-16  Score=143.38  Aligned_cols=137  Identities=29%  Similarity=0.407  Sum_probs=105.6

Q ss_pred             CeEEEEcCChHHHHHHHHHHhCCCeEe-----------------------------------------------------
Q 012165          208 KKVVVVGGGYIGMEVAAAAVGWKLDTT-----------------------------------------------------  234 (469)
Q Consensus       208 ~~vvVvG~G~~g~e~A~~l~~~g~~v~-----------------------------------------------------  234 (469)
                      ..++|||+|+.|+++|.++++.|.++.                                                     
T Consensus         4 ~DviVIG~GpaGl~aA~~aar~G~kV~vIEk~~~GG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   83 (223)
T d1ebda1           4 TETLVVGAGPGGYVAAIRAAQLGQKVTIVEKGNLGGVCLNVGCIPSKALISASHRYEQAKHSEEMGIKAENVTIDFAKVQ   83 (223)
T ss_dssp             CSEEEECCSHHHHHHHHHHHHTTCCEEEEESSCTTHHHHHTSHHHHHHHHHHHHHHHHHHTCGGGTEECCSCEECHHHHH
T ss_pred             CCEEEECCCHHHHHHHHHHHHCCCEEEEEecCCCCcceeccccccccccccccchhhhhhhhhhhcccchhheeeHHHHh
Confidence            468999999999999999999999875                                                     


Q ss_pred             ------------eeHHHHHHcCcEEEcCCeEEEEEeCCCCcEEEEEcCCCCEEeCCEEEEcc--------CCccCCch--
Q 012165          235 ------------RYEQLYQQNGVKFVKGASIKNLEAGSDGRVAAVKLEDGSTIDADTIVIGI--------GAKPTVSP--  292 (469)
Q Consensus       235 ------------~~~~~l~~~gV~~~~~~~v~~i~~~~~~~v~~v~~~~g~~i~~D~vi~a~--------G~~p~~~~--  292 (469)
                                  .+...++..||+++.+.  ..+..  ..........++..+.+|.+|+++        |++||++.  
T Consensus        84 ~~~~~~v~~l~~~~~~~~~~~~V~~i~G~--a~f~~--~~~~~v~~~~~~~~~~~~~iiIa~g~~p~~~~G~~p~~~~l~  159 (223)
T d1ebda1          84 EWKASVVKKLTGGVEGLLKGNKVEIVKGE--AYFVD--ANTVRVVNGDSAQTYTFKNAIIATGSRPIELVGRRPNTDELG  159 (223)
T ss_dssp             HHHHHHHHHHHHHHHHHHHTTTCEEEESE--EEEEE--TTEEEEEETTEEEEEECSEEEECCCEEECCBSCEEESCSSSS
T ss_pred             hHHHHHHHHHHhhHHHhhhccceeeeccE--EEEcc--CcccceeccccceEEecccEEEEcCCCccccccceecCCCCC
Confidence                        12344567789988773  23332  222222333444678999999985        88899885  


Q ss_pred             hhhcCCccc-CCCEEeCCCCCCCCCceEEeccccccCCccCCcccccchHHHHHHHHHHHHHHHhcC
Q 012165          293 FERVGLNSS-VGGIQVDGQFRTRMPGIFAIGDVAAFPLKMYDRTARVEHVDHARQSAQHCIKALLSA  358 (469)
Q Consensus       293 ~~~~gl~~~-~g~i~Vd~~~~t~~~~Vfa~GD~a~~~~~~~~~~~~~~~~~~A~~~a~~~a~~i~~~  358 (469)
                      ++++|++.+ +|+|.||++||||.|+|||+|||+..+.          ....|..+|+.+|++|++.
T Consensus       160 l~~~gv~~~~~G~I~vd~~~~T~~~gvyA~GDv~~~~~----------~~~~A~~~g~~aa~~i~g~  216 (223)
T d1ebda1         160 LEQIGIKMTNRGLIEVDQQCRTSVPNIFAIGDIVPGPA----------LAHKASYEGKVAAEAIAGH  216 (223)
T ss_dssp             TTTTTCCBCTTSCBCCCTTCBCSSTTEEECGGGSSSCC----------CHHHHHHHHHHHHHHHTSC
T ss_pred             hHhcCceECCCCCEeECCCCCCCCCCEEEEeccCCCcc----------cHHHHHHHHHHHHHHHcCC
Confidence            678899876 6789999999999999999999998654          2334999999999999964

>d1mo9a1 c.3.1.5 (A:2-192,A:314-383) NADH-dependent 2-ketopropyl coenzyme M oxidoreductase/carboxylase {Xanthobacter sp., py2 [TaxId: 35809]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: NADH-dependent 2-ketopropyl coenzyme M oxidoreductase/carboxylase
species: Xanthobacter sp., py2 [TaxId: 35809]

Probab=99.66  E-value=1.9e-16  Score=145.85  Aligned_cols=79  Identities=23%  Similarity=0.485  Sum_probs=66.5

Q ss_pred             CCCCEEeCCEEEEccCCccCCchh----------hhcCCccc-CCCEEeCCCCCCCCCceEEeccccccCCccCCccccc
Q 012165          270 EDGSTIDADTIVIGIGAKPTVSPF----------ERVGLNSS-VGGIQVDGQFRTRMPGIFAIGDVAAFPLKMYDRTARV  338 (469)
Q Consensus       270 ~~g~~i~~D~vi~a~G~~p~~~~~----------~~~gl~~~-~g~i~Vd~~~~t~~~~Vfa~GD~a~~~~~~~~~~~~~  338 (469)
                      .+|++++||.+|+|+|.+|+++.+          +.+|++.+ +|.|.||++|||+.|+|||+|||+..|.         
T Consensus       167 ~~g~~i~ad~viiAtG~~P~~~~i~~~~~~~~l~~~~Gl~~~~~G~I~Vn~~~~Ts~~~IyA~GDv~~~~~---------  237 (261)
T d1mo9a1         167 AAGKVFKAKNLILAVGAGPGTLDVPEQPRSAELAKILGLDLGPKGEVLVNEYLQTSVPNVYAVGDLIGGPM---------  237 (261)
T ss_dssp             ETTEEEEBSCEEECCCEECCCCCSTCEECCHHHHHHHTCCBCTTSCBCCCTTSBCSSTTEEECGGGGCSSC---------
T ss_pred             cccceEeeeeeeeccCCCCCcCcccccccccccccceeeeeccCCEEEeCCCcccCCCCEEEEEEeCCCcc---------
Confidence            367889999999999999997543          44678876 6779999999999999999999987654         


Q ss_pred             chHHHHHHHHHHHHHHHhcC
Q 012165          339 EHVDHARQSAQHCIKALLSA  358 (469)
Q Consensus       339 ~~~~~A~~~a~~~a~~i~~~  358 (469)
                       ....|..+|+.+|.||++.
T Consensus       238 -l~~~A~~~G~~aa~~i~G~  256 (261)
T d1mo9a1         238 -EMFKARKSGCYAARNVMGE  256 (261)
T ss_dssp             -SHHHHHHHHHHHHHHHTTC
T ss_pred             -cHHHHHHHHHHHHHHHCCC
Confidence             2344999999999999974

>d1q1ra2 c.3.1.5 (A:115-247) Putidaredoxin reductase {Pseudomonas putida [TaxId: 303]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Putidaredoxin reductase
species: Pseudomonas putida [TaxId: 303]

Probab=99.66  E-value=1.7e-16  Score=129.82  Aligned_cols=101  Identities=37%  Similarity=0.652  Sum_probs=92.3

Q ss_pred             cCcEEEecCHHHHHHHHHhhhcCCeEEEEcCChHHHHHHHHHHhCCCeEe-------------------eeHHHHHHcCc
Q 012165          185 LPGVHYIRDVADADALISSLEKAKKVVVVGGGYIGMEVAAAAVGWKLDTT-------------------RYEQLYQQNGV  245 (469)
Q Consensus       185 ~~~v~~~~~~~~~~~~~~~~~~~~~vvVvG~G~~g~e~A~~l~~~g~~v~-------------------~~~~~l~~~gV  245 (469)
                      .+++++++++.|++++++.+..+++++|||||++|+|+|..|+++|.+++                   .+++.++++||
T Consensus        13 ~~~v~~lr~~~d~~~l~~~~~~~k~v~VIGgG~iG~E~A~~l~~~g~~Vtvie~~~~~l~~~~~~~~~~~~~~~~~~~GV   92 (133)
T d1q1ra2          13 ANNFRYLRTLEDAECIRRQLIADNRLVVIGGGYIGLEVAATAIKANMHVTLLDTAARVLERVTAPPVSAFYEHLHREAGV   92 (133)
T ss_dssp             STTEEESSSHHHHHHHHHTCCTTCEEEEECCSHHHHHHHHHHHHTTCEEEEECSSSSTTTTTSCHHHHHHHHHHHHHHTC
T ss_pred             cCCeeEeCCHHHHHHHHHhhccCCEEEEECCchHHHHHHHHHHhhCcceeeeeecccccccccchhhhhhhhhccccccc
Confidence            56899999999999999988889999999999999999999999999998                   55788899999


Q ss_pred             EEEcCCeEEEEEeCC-CCcEEEEEcCCCCEEeCCEEEEccC
Q 012165          246 KFVKGASIKNLEAGS-DGRVAAVKLEDGSTIDADTIVIGIG  285 (469)
Q Consensus       246 ~~~~~~~v~~i~~~~-~~~v~~v~~~~g~~i~~D~vi~a~G  285 (469)
                      ++++++.+++++... ++.+..+.++||+++++|.||+|+|
T Consensus        93 ~i~~~~~v~~i~~~~~~~~v~~v~~~~G~~i~~D~vi~a~G  133 (133)
T d1q1ra2          93 DIRTGTQVCGFEMSTDQQKVTAVLCEDGTRLPADLVIAGIG  133 (133)
T ss_dssp             EEECSCCEEEEEECTTTCCEEEEEETTSCEEECSEEEECCC
T ss_pred             EEEeCCeEEEEEEeCCCceEEEEECCCCCEEECCEEEEeeC
Confidence            999999999998653 5567789999999999999999998

>d1dxla1 c.3.1.5 (A:4-152,A:276-347) Dihydrolipoamide dehydrogenase {Garden pea (Pisum sativum) [TaxId: 3888]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Dihydrolipoamide dehydrogenase
species: Garden pea (Pisum sativum) [TaxId: 3888]

Probab=99.66  E-value=2.2e-16  Score=141.61  Aligned_cols=138  Identities=28%  Similarity=0.506  Sum_probs=103.4

Q ss_pred             CeEEEEcCChHHHHHHHHHHhCCCeEe-----------------------------------------------------
Q 012165          208 KKVVVVGGGYIGMEVAAAAVGWKLDTT-----------------------------------------------------  234 (469)
Q Consensus       208 ~~vvVvG~G~~g~e~A~~l~~~g~~v~-----------------------------------------------------  234 (469)
                      -.++|||+|+.|+++|.+++++|.++.                                                     
T Consensus         4 yDvvVIGgGpaGl~aA~~aa~~G~kV~vie~~~~~GG~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~g~~~~~~~~~~~~   83 (221)
T d1dxla1           4 NDVVIIGGGPGGYVAAIKAAQLGFKTTCIEKRGALGGTCLNVGCIPSKALLHSSHMYHEAKHSFANHGVKVSNVEIDLAA   83 (221)
T ss_dssp             CCEEEECCSHHHHHHHHHHHHHTCCEEEEECSSSSCCSHHHHSHHHHHHHHHHHHHHHHHHHTHHHHTEEESCEEECHHH
T ss_pred             CCEEEECCCHHHHHHHHHHHHCCCcEEEEEecCCCCCeeecchhhhhhhhhHhHHHHHHHhhhhhhcCeecccceecHHH
Confidence            468999999999999999999998875                                                     


Q ss_pred             --------------eeHHHHHHcCcEEEcCCeEEEEEeCCCCcE-EEEEcCCCCEEeCCEEEEccC-----CccCCch--
Q 012165          235 --------------RYEQLYQQNGVKFVKGASIKNLEAGSDGRV-AAVKLEDGSTIDADTIVIGIG-----AKPTVSP--  292 (469)
Q Consensus       235 --------------~~~~~l~~~gV~~~~~~~v~~i~~~~~~~v-~~v~~~~g~~i~~D~vi~a~G-----~~p~~~~--  292 (469)
                                    .+...++..+|+++... .....   .... ......+...+.+|.||+|||     ++|+++.  
T Consensus        84 ~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~~-~~~~~---~~~~~~~~~~~~~~~~~a~~VIiATGs~~~gr~p~~~~l~  159 (221)
T d1dxla1          84 MMGQKDKAVSNLTRGIEGLFKKNKVTYVKGY-GKFVS---PSEISVDTIEGENTVVKGKHIIIATGSDVKGRTPFTSGLN  159 (221)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHTCEEEESC-EEEEE---TTEEEECCSSSCCEEEECSEEEECCCEEECCEEECCTTSC
T ss_pred             HHHHHHHHHHHHhhHHHHhhhcCCeEEEEec-ccccc---ccccccccccccccccccceEEEeECCCccCccccCCCCC
Confidence                          22345566788877553 12221   1111 111223445789999999998     5678774  


Q ss_pred             hhhcCCccc-CCCEEeCCCCCCCCCceEEeccccccCCccCCcccccchHHHHHHHHHHHHHHHhcCC
Q 012165          293 FERVGLNSS-VGGIQVDGQFRTRMPGIFAIGDVAAFPLKMYDRTARVEHVDHARQSAQHCIKALLSAQ  359 (469)
Q Consensus       293 ~~~~gl~~~-~g~i~Vd~~~~t~~~~Vfa~GD~a~~~~~~~~~~~~~~~~~~A~~~a~~~a~~i~~~~  359 (469)
                      ++++|++.+ +|+|.||+++||++|+|||+|||+..+.          .+..|..+|+.+|++|+++.
T Consensus       160 l~~~gv~~~~~G~i~vd~~~~T~v~gi~A~GDv~~g~~----------l~~~A~~~g~~aa~~i~g~~  217 (221)
T d1dxla1         160 LDKIGVETDKLGRILVNERFSTNVSGVYAIGDVIPGPM----------LAHKAEEDGVACVEYLAGKV  217 (221)
T ss_dssp             CTTTTCCBCSSSCBCCCTTCBCSSTTEEECSTTSSSCC----------CHHHHHHHHHHHHHHHTTSC
T ss_pred             hHhcCceEcCCCcEEeCCCcccCCCCEEEEeccCCCcc----------cHHHHHHHHHHHHHHHcCCC
Confidence            578899886 6789999999999999999999997654          33458899999999998643

>d1ps9a3 c.4.1.1 (A:331-465,A:628-671) 2,4-dienoyl-CoA reductase, middle domain {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: Nucleotide-binding domain
superfamily: Nucleotide-binding domain
family: N-terminal domain of adrenodoxin reductase-like
domain: 2,4-dienoyl-CoA reductase, middle domain
species: Escherichia coli [TaxId: 562]

Probab=99.64  E-value=8.5e-18  Score=144.16  Aligned_cols=141  Identities=17%  Similarity=0.205  Sum_probs=94.0

Q ss_pred             cCCcccccccccccccccCCCCCCcEEEEcCcHHHHHHHHHHHHcCCCCCcEEEEcCCCCCCCCCCCCcccccCCCCCCC
Q 012165           29 HSSAKNFQRRGFVVAYSSFANENREFVIVGGGNAAGYAARTFVEHGMADGRLCIVSKEAYAPYERPALTKGYLFPLDKKP  108 (469)
Q Consensus        29 ~~~~~~~~~~~~~~~~~~~~~~~~~vvIIGgG~AGl~aA~~L~~~g~~~~~V~vie~~~~~~~~~~~l~~~~~~~~~~~~  108 (469)
                      |.+||...++. .. ...+..++++|+|||||||||+||..|+++|+   +|+|+|+.+.++.+ ..+..  ..+.....
T Consensus        23 C~~Np~~g~e~-~~-~~~~~~~~k~V~IIGaGPAGL~AA~~la~~G~---~Vtl~E~~~~~GG~-l~~~~--~~p~~~~~   94 (179)
T d1ps9a3          23 CLVNPRACHET-KM-PILPAVQKKNLAVVGAGPAGLAFAINAAARGH---QVTLFDAHSEIGGQ-FNIAK--QIPGKEEF   94 (179)
T ss_dssp             CSSCTTTTCTT-TS-CCCSCSSCCEEEEECCSHHHHHHHHHHHTTTC---EEEEEESSSSSCTT-HHHHT--TSTTCTTH
T ss_pred             EeeCccccCcc-cc-ccCCCCCCcEEEEECccHHHHHHHHHHHhhcc---ceEEEeccCccCce-EEEEE--eCcccchH
Confidence            99999755432 22 23345667999999999999999999999998   89999999876543 11100  00100000


Q ss_pred             CCCCCCccccCCCCCCCCHhHHHHCCcEEEeCCcEEEEeCCCcEEEeCCCeEEEeccEEeccCCCCCcCCCCCCCCcCcE
Q 012165          109 ARLPGFHTCVGSGGERQTPEWYKEKGIEMIYQDPVTSIDIEKQTLITNSGKLLKYGSLIVATGCTASRFPEKIGGYLPGV  188 (469)
Q Consensus       109 ~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~v~~id~~~~~v~~~~g~~~~yd~lVlAtG~~~~~~~~~~g~~~~~v  188 (469)
                      .++           .....+++++.++++++++.|+.   +         ....||++|+|||+.|+.++      .++ 
T Consensus        95 ~~~-----------~~~~~~~~~~~gV~i~l~~~Vt~---~---------~~~~~d~vilAtG~~~~~~~------~pg-  144 (179)
T d1ps9a3          95 YET-----------LRYYRRMIEVTGVTLKLNHTVTA---D---------QLQAFDETILASGIPNRALA------QPL-  144 (179)
T ss_dssp             HHH-----------HHHHHHHHHHHTCEEEESCCCCS---S---------SSCCSSEEEECCCEECCTTH------HHH-
T ss_pred             HHH-----------HHHHHHhhhcCCeEEEeCCEEcc---c---------ccccceeEEEeecCCCcccc------cch-
Confidence            000           12344556778999999977641   1         12479999999998765322      111 


Q ss_pred             EEecCHHHHHHHHHhhhcCCeEEEEcCChHHHHH
Q 012165          189 HYIRDVADADALISSLEKAKKVVVVGGGYIGMEV  222 (469)
Q Consensus       189 ~~~~~~~~~~~~~~~~~~~~~vvVvG~G~~g~e~  222 (469)
                                     ...+++++|+|+|.+++++
T Consensus       145 ---------------~~~g~~v~vigggd~a~~~  163 (179)
T d1ps9a3         145 ---------------IDSGKTVHLIGGCDVAMEL  163 (179)
T ss_dssp             ---------------HTTTCCEEECGGGTCCSSC
T ss_pred             ---------------hccCCEEEEECCcHhhhhc
Confidence                           2358999999999988775

>d1xdia1 c.3.1.5 (A:2-161,A:276-348) Dihydrolipoamide dehydrogenase {Mycobacterium tuberculosis [TaxId: 1773]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Dihydrolipoamide dehydrogenase
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=99.63  E-value=7.6e-16  Score=139.30  Aligned_cols=116  Identities=23%  Similarity=0.334  Sum_probs=81.8

Q ss_pred             eHHHHHHcCcEEEcCCeEEEEEeCC--CCcEEEEEcCCCC--EEeCCEEEEccCCccCCch-----------hhhcCCcc
Q 012165          236 YEQLYQQNGVKFVKGASIKNLEAGS--DGRVAAVKLEDGS--TIDADTIVIGIGAKPTVSP-----------FERVGLNS  300 (469)
Q Consensus       236 ~~~~l~~~gV~~~~~~~v~~i~~~~--~~~v~~v~~~~g~--~i~~D~vi~a~G~~p~~~~-----------~~~~gl~~  300 (469)
                      +...++..||+++.+... .+....  ......+...+|+  ++++|.+|+++|.+|....           ++..+++.
T Consensus       100 ~~~~~~~~gV~vi~G~~~-~~~~~~~~~~~~v~v~~~dg~~~~i~ad~viiAtG~~p~~~~~~~~~~~~~l~l~~~gv~~  178 (233)
T d1xdia1         100 ITAQLLSMGVQVIAGRGE-LIDSTPGLARHRIKATAADGSTSEHEADVVLVATGASPRILPSGSVPNTSGLGLERVGIQL  178 (233)
T ss_dssp             HHHHHHHTTCEEEESEEE-ECCSSSCCSSEEEEEECTTSCEEEEEESEEEECCCEEECCCGGCEEECCSSSCTTTTTCCC
T ss_pred             eehhhcccceeEEECccc-ccccccccccceEEEEecCCceeeeecceeeeecCcccccccccccccccccccchhhhcc
Confidence            345577788998876321 111110  1122356667774  6999999999999986431           45566666


Q ss_pred             c-CCCEEeCCCCCCCCCceEEeccccccCCccCCcccccchHHHHHHHHHHHHHHHhcCCCCC
Q 012165          301 S-VGGIQVDGQFRTRMPGIFAIGDVAAFPLKMYDRTARVEHVDHARQSAQHCIKALLSAQTHT  362 (469)
Q Consensus       301 ~-~g~i~Vd~~~~t~~~~Vfa~GD~a~~~~~~~~~~~~~~~~~~A~~~a~~~a~~i~~~~~~~  362 (469)
                      + +|+|.||++|||+.|+|||+|||+..+.          ....|..+|+.+|.|+++....|
T Consensus       179 ~~~G~I~vd~~~~T~~~gIyA~GDv~~~~~----------l~~~A~~~g~~aa~~~~g~~~~p  231 (233)
T d1xdia1         179 GRGNYLTVDRVSRTLATGIYAAGDCTGLLP----------LASVAAMQGRIAMYHALGEGVSP  231 (233)
T ss_dssp             BTTTBCCCCSSSBCSSTTEEECSGGGTSCS----------CHHHHHHHHHHHHHHHTTCCCCC
T ss_pred             cCCCcCCcCCCcccCCCCEEEEEEeCCCch----------hHHHHHHHHHHHHHHHcCCCCCC
Confidence            6 5679999999999999999999987543          23349999999999999754443

>d1djqa3 c.4.1.1 (A:341-489,A:646-729) Trimethylamine dehydrogenase, middle domain {Methylophilus methylotrophus, w3a1 [TaxId: 17]}

class: Alpha and beta proteins (a/b)
fold: Nucleotide-binding domain
superfamily: Nucleotide-binding domain
family: N-terminal domain of adrenodoxin reductase-like
domain: Trimethylamine dehydrogenase, middle domain
species: Methylophilus methylotrophus, w3a1 [TaxId: 17]

Probab=99.62  E-value=1.5e-19  Score=164.17  Aligned_cols=192  Identities=11%  Similarity=0.070  Sum_probs=105.4

Q ss_pred             cCCCCcccccc-------cCCccccccc---ccccccccCCCCCCcEEEEcCcHHHHHHHHHHHHcCCCCCcEEEEcCCC
Q 012165           18 CPQSPSLHRIR-------HSSAKNFQRR---GFVVAYSSFANENREFVIVGGGNAAGYAARTFVEHGMADGRLCIVSKEA   87 (469)
Q Consensus        18 ~~~~~~~~~~~-------~~~~~~~~~~---~~~~~~~~~~~~~~~vvIIGgG~AGl~aA~~L~~~g~~~~~V~vie~~~   87 (469)
                      .-|+.+|++..       |.+|+..-+.   .+.+...+++...++|+|||||+|||+||..|+++|+   +++|+|+++
T Consensus         6 ~~c~~c~~~~~~~~~~~~c~~n~~~~~e~~~~~~p~~~~~~~~~k~VvIIGaGpAGl~aA~~l~~~G~---~v~l~E~~~   82 (233)
T d1djqa3           6 IGCNVCISRWEIGGPPMICTQNATAGEEYRRGWHPEKFRQTKNKDSVLIVGAGPSGSEAARVLMESGY---TVHLTDTAE   82 (233)
T ss_dssp             CCCCHHHHHHHHSSSCCCCSSCTTTTTHHHHCCCSSCCCCCSSCCEEEEECCSHHHHHHHHHHHHTTC---EEEEECSSS
T ss_pred             hhhHHHHcccccCCceeeeecCcccChHHhcCCCCCccCcccCCceEEEEcccHHHHHHHHHHHHhcc---ceeeEeecc
Confidence            45666665543       6777653322   2222334455678999999999999999999999998   799999988


Q ss_pred             CCCCCCCCCcccccCCCCCCCCCCCCCccccCCCCCCCCHhHHHHCCcEEEeCCcEEEEeCCCcEEEeCCCeEEEeccEE
Q 012165           88 YAPYERPALTKGYLFPLDKKPARLPGFHTCVGSGGERQTPEWYKEKGIEMIYQDPVTSIDIEKQTLITNSGKLLKYGSLI  167 (469)
Q Consensus        88 ~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~v~~id~~~~~v~~~~g~~~~yd~lV  167 (469)
                      ..+.... +.  ...+      ..+.+...     .......+.+.....   .. ..++...+.+...+..++.||+||
T Consensus        83 ~~GG~~~-~~--~~~~------~~~~~~~~-----~~~~~~~~~~~~~~~---~~-~~~~~~~~~~~~~~~~~~~~d~vv  144 (233)
T d1djqa3          83 KIGGHLN-QV--AALP------GLGEWSYH-----RDYRETQITKLLKKN---KE-SQLALGQKPMTADDVLQYGADKVI  144 (233)
T ss_dssp             STTTTHH-HH--TTST------TCGGGGHH-----HHHHHHHHHHHHTTC---TT-CEEECSCCCCCHHHHHTSCCSEEE
T ss_pred             ccCCccc-cc--cccc------eeeccccc-----chhHHHHHHHHhhcc---ee-eeeecccccccchhhhhhccceee
Confidence            7643210 00  0000      00000000     000111122111110   01 112233333333334457899999


Q ss_pred             eccCCCCCcCCCCCCCCcCcEEEecCHHHHHHHHHhhhcCCeEEEEcCChHHHHHHHHHHhCCCeEe
Q 012165          168 VATGCTASRFPEKIGGYLPGVHYIRDVADADALISSLEKAKKVVVVGGGYIGMEVAAAAVGWKLDTT  234 (469)
Q Consensus       168 lAtG~~~~~~~~~~g~~~~~v~~~~~~~~~~~~~~~~~~~~~vvVvG~G~~g~e~A~~l~~~g~~v~  234 (469)
                      +|||+.+.. |.+++...........   ...+......+++++|+|+|++|+|+|..|++.+.+|+
T Consensus       145 iAtG~~~~~-~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~vvViGgG~~g~e~A~~l~~~g~~Vt  207 (233)
T d1djqa3         145 IATGASECT-LWNELKARESEWAEND---IKGIYLIGDAEAPRLIADATFTGHRVAREIEEANPQIA  207 (233)
T ss_dssp             ECCCEECCH-HHHHHHHTTHHHHHTT---CCEEEECGGGTSCCCHHHHHHHHHHHHHTTTSSCTTSC
T ss_pred             eccCCCccc-ccccccccccccchhh---hhhhhhccccCCceeEecCchHHHHHHHHHHhcCCceE
Confidence            999988653 2222211111111000   00000011356899999999999999999999999886

>d3grsa1 c.3.1.5 (A:18-165,A:291-363) Glutathione reductase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Glutathione reductase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.60  E-value=2.6e-15  Score=134.47  Aligned_cols=135  Identities=23%  Similarity=0.411  Sum_probs=101.0

Q ss_pred             eEEEEcCChHHHHHHHHHHhCCCeEe------------------------------------------------------
Q 012165          209 KVVVVGGGYIGMEVAAAAVGWKLDTT------------------------------------------------------  234 (469)
Q Consensus       209 ~vvVvG~G~~g~e~A~~l~~~g~~v~------------------------------------------------------  234 (469)
                      .++|||+|+.|+++|..+++.|.+|.                                                      
T Consensus         5 DviIIG~GpaG~~aA~~aar~G~kV~vIEk~~~GG~c~n~g~~~~k~l~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~   84 (221)
T d3grsa1           5 DYLVIGGGSGGLASARRAAELGARAAVVESHKLGGTCVNVGCVPKKVMWNTAVHSEFMHDHADYGFPSCEGKFNWRVIKE   84 (221)
T ss_dssp             SEEEECCSHHHHHHHHHHHHTTCCEEEEESSCTTHHHHHHSHHHHHHHHHHHHHHHHHHTTGGGTSCCCCCCCCHHHHHH
T ss_pred             CEEEECCCHHHHHHHHHHHHCCCEEEEEeccCCCCccccchhhhhhhhhhHHHHHHHHhhhhhccccccccchhhhhhhh
Confidence            48999999999999999999998876                                                      


Q ss_pred             -----------eeHHHHHHcCcEEEcCCeEEEEEeCCCCcEEEEEcCCCCEEeCCEEEEccCCccC--------Cch--h
Q 012165          235 -----------RYEQLYQQNGVKFVKGASIKNLEAGSDGRVAAVKLEDGSTIDADTIVIGIGAKPT--------VSP--F  293 (469)
Q Consensus       235 -----------~~~~~l~~~gV~~~~~~~v~~i~~~~~~~v~~v~~~~g~~i~~D~vi~a~G~~p~--------~~~--~  293 (469)
                                 .....++..||+++.+.-.  +. . ...+ .+. .+..++.++.+++++|.+|.        ++.  |
T Consensus        85 ~~~~~v~~~~~~~~~~~~~~gV~~i~G~a~--~~-~-~~~~-~~~-~~~~~~~~~~~~iatG~~p~vp~~r~p~~~~l~L  158 (221)
T d3grsa1          85 KRDAYVSRLNAIYQNNLTKSHIEIIRGHAA--FT-S-DPKP-TIE-VSGKKYTAPHILIATGGMPSTPHERVPNTKDLSL  158 (221)
T ss_dssp             HHHHHHHHHHHHHHHHHHHTTCEEEESCCE--EC-S-CSSC-EEE-ETTEEEECSCEEECCCEEECCCCTEEESCTTTTG
T ss_pred             hhheEEeeeccchhhhhccCceEEEEEeee--ec-c-ccce-eee-eeccccccceeEEecCccccCCCccccCCCCcCc
Confidence                       2234577889998876421  11 1 1111 122 23357889999999996554        332  6


Q ss_pred             hhcCCccc-CCCEEeCCCCCCCCCceEEeccccccCCccCCcccccchHHHHHHHHHHHHHHHhcCC
Q 012165          294 ERVGLNSS-VGGIQVDGQFRTRMPGIFAIGDVAAFPLKMYDRTARVEHVDHARQSAQHCIKALLSAQ  359 (469)
Q Consensus       294 ~~~gl~~~-~g~i~Vd~~~~t~~~~Vfa~GD~a~~~~~~~~~~~~~~~~~~A~~~a~~~a~~i~~~~  359 (469)
                      ++.|++.+ +|+|.||+++|||.|+|||+|||+..+.          ....|..+|+.+|++|++..
T Consensus       159 ~~~gv~~~~~G~I~vd~~~~T~~~gvyA~GDv~~~~~----------l~~~A~~~G~~aa~~~~~~~  215 (221)
T d3grsa1         159 NKLGIQTDDKGHIIVDEFQNTNVKGIYAVGDVCGKAL----------LTPVAIAAGRKLAHRLFEYK  215 (221)
T ss_dssp             GGTTCCBCTTSCBCCCTTCBCSSTTEEECGGGGTSSC----------CHHHHHHHHHHHHHHHHSCC
T ss_pred             hhcCcEECCCccEEeCCCccccCCcEEEEEEccCCcC----------cHHHHHHHHHHHHHHHcCCC
Confidence            77888876 6789999999999999999999987543          23348999999999999754

>d1nhpa2 c.3.1.5 (A:120-242) NADH peroxidase {Enterococcus faecalis [TaxId: 1351]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: NADH peroxidase
species: Enterococcus faecalis [TaxId: 1351]

Probab=99.59  E-value=4.2e-15  Score=119.76  Aligned_cols=102  Identities=29%  Similarity=0.417  Sum_probs=88.8

Q ss_pred             CCCCCcCcEEEecCHHHHHHHHHhhh--cCCeEEEEcCChHHHHHHHHHHhCCCeEe-------------------eeHH
Q 012165          180 KIGGYLPGVHYIRDVADADALISSLE--KAKKVVVVGGGYIGMEVAAAAVGWKLDTT-------------------RYEQ  238 (469)
Q Consensus       180 ~~g~~~~~v~~~~~~~~~~~~~~~~~--~~~~vvVvG~G~~g~e~A~~l~~~g~~v~-------------------~~~~  238 (469)
                      +||.+++++++++++.|+.++++.+.  .+++++|||+|++|+|+|..|+++|.+++                   .+++
T Consensus         1 IPG~d~~~v~~~~~~~da~~i~~~~~~~~~k~vvViGgG~iG~E~A~~l~~~g~~Vtlie~~~~~l~~~~d~~~~~~~~~   80 (123)
T d1nhpa2           1 IPGKDLDNIYLMRGRQWAIKLKQKTVDPEVNNVVVIGSGYIGIEAAEAFAKAGKKVTVIDILDRPLGVYLDKEFTDVLTE   80 (123)
T ss_dssp             STTTTSBSEECCCHHHHHHHHHHHHTCTTCCEEEEECCSHHHHHHHHHHHHTTCEEEEEESSSSTTTTTCCHHHHHHHHH
T ss_pred             CcCCCCCCeEEeCCHHHHHHHHHHhhccCCCEEEEECChHHHHHHHHHhhccceEEEEEEecCcccccccchhhHHHHHH
Confidence            46878899999999999999988764  46899999999999999999999999998                   5678


Q ss_pred             HHHHcCcEEEcCCeEEEEEeCCCCcEEEEEcCCCCEEeCCEEEEcc
Q 012165          239 LYQQNGVKFVKGASIKNLEAGSDGRVAAVKLEDGSTIDADTIVIGI  284 (469)
Q Consensus       239 ~l~~~gV~~~~~~~v~~i~~~~~~~v~~v~~~~g~~i~~D~vi~a~  284 (469)
                      .++++||++++++.+++++.  ++.+..+ +.||++++||+||+|+
T Consensus        81 ~l~~~gv~~~~~~~v~~i~~--~~~~~~v-~~dg~~i~~D~vi~aI  123 (123)
T d1nhpa2          81 EMEANNITIATGETVERYEG--DGRVQKV-VTDKNAYDADLVVVAV  123 (123)
T ss_dssp             HHHTTTEEEEESCCEEEEEC--SSBCCEE-EESSCEEECSEEEECS
T ss_pred             HhhcCCeEEEeCceEEEEEc--CCCEEEE-EeCCCEEECCEEEEEC
Confidence            89999999999999999984  4444333 6788999999999984

>d1lvla1 c.3.1.5 (A:1-150,A:266-335) Dihydrolipoamide dehydrogenase {Pseudomonas putida [TaxId: 303]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Dihydrolipoamide dehydrogenase
species: Pseudomonas putida [TaxId: 303]

Probab=99.59  E-value=4.7e-15  Score=132.74  Aligned_cols=134  Identities=23%  Similarity=0.353  Sum_probs=100.8

Q ss_pred             CeEEEEcCChHHHHHHHHHHhCCCeEe-----------------------------------------------------
Q 012165          208 KKVVVVGGGYIGMEVAAAAVGWKLDTT-----------------------------------------------------  234 (469)
Q Consensus       208 ~~vvVvG~G~~g~e~A~~l~~~g~~v~-----------------------------------------------------  234 (469)
                      ..++|||+|+.|+++|..++++|.+|.                                                     
T Consensus         6 ~DlvVIG~GpaGl~aA~~aa~~G~~V~liE~~~~GG~c~~~gc~p~k~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~   85 (220)
T d1lvla1           6 TTLLIIGGGPGGYVAAIRAGQLGIPTVLVEGQALGGTCLNIGCIPSKALIHVAEQFHQASRFTEPSPLGISVASPRLDIG   85 (220)
T ss_dssp             CSEEEECCSHHHHHHHHHHHHHTCCEEEECSSCTTHHHHHHSHHHHHHHHHHHHHHHHHHHTTSCCTTCCCCCCCCCCHH
T ss_pred             cCEEEECCCHHHHHHHHHHHHCCCcEEEEecCCCCCcccccccccchhhhhhHHHHhhhhhccccccceEEeccceehHH
Confidence            579999999999999999999999986                                                     


Q ss_pred             ---------------eeHHHHHHcCcEEEcCCeEEEEEeCCCCcEEEEEcCCCCEEeCCEEEEccCCccCCc--------
Q 012165          235 ---------------RYEQLYQQNGVKFVKGASIKNLEAGSDGRVAAVKLEDGSTIDADTIVIGIGAKPTVS--------  291 (469)
Q Consensus       235 ---------------~~~~~l~~~gV~~~~~~~v~~i~~~~~~~v~~v~~~~g~~i~~D~vi~a~G~~p~~~--------  291 (469)
                                     .....+++.+++++.+..  .+..  ..    ....++.++.+|.+|+|+|.+|...        
T Consensus        86 ~~~~~~~~~v~~~~~~~~~~~~~~~v~~i~G~~--~~~~--~~----~~~~~~~~i~a~~viiAtG~~p~~lp~~~~~~~  157 (220)
T d1lvla1          86 QSVAWKDGIVDRLTTGVAALLKKHGVKVVHGWA--KVLD--GK----QVEVDGQRIQCEHLLLATGSSSVELPRRPRTKG  157 (220)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHTTCEEECSCE--EEEE--TT----EEEETTEEEECSEEEECCCEEECCBTEEECCSS
T ss_pred             HHhhhheeEEeeeccchhhhhccCceEEEEeee--cccC--cc----cccccceeEeeceeeEcCCCCcccccccccccC
Confidence                           123445556777766531  1111  11    1123556899999999999988642        


Q ss_pred             -hhhhcCCcccCCCEEeCCCCCCCCCceEEeccccccCCccCCcccccchHHHHHHHHHHHHHHHhcCC
Q 012165          292 -PFERVGLNSSVGGIQVDGQFRTRMPGIFAIGDVAAFPLKMYDRTARVEHVDHARQSAQHCIKALLSAQ  359 (469)
Q Consensus       292 -~~~~~gl~~~~g~i~Vd~~~~t~~~~Vfa~GD~a~~~~~~~~~~~~~~~~~~A~~~a~~~a~~i~~~~  359 (469)
                       .+...++..++++|.||+++||+.|+|||+|||+..+.          ....|..+|+.+|++|++..
T Consensus       158 ~~~~~~~~~~~~g~i~vd~~~~T~~~~I~A~GDv~~~~~----------l~~~a~~~g~~~a~~i~G~~  216 (220)
T d1lvla1         158 FNLECLDLKMNGAAIAIDERCQTSMHNVWAIGDVAGEPM----------LAHRAMAQGEMVAEIIAGKA  216 (220)
T ss_dssp             SSGGGSCCCEETTEECCCTTCBCSSTTEEECGGGGCSSC----------CHHHHHHHHHHHHHHHTTCC
T ss_pred             CcceeeehhhcCCcccccchhhcCCCCEEEEEEeCCccc----------chhhhhhhHHHHHHHHcCCC
Confidence             14555666778999999999999999999999998654          23348899999999998743

>d1feca1 c.3.1.5 (A:1-169,A:287-357) Trypanothione reductase {Crithidia fasciculata [TaxId: 5656]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Trypanothione reductase
species: Crithidia fasciculata [TaxId: 5656]

Probab=99.58  E-value=4.6e-16  Score=141.45  Aligned_cols=78  Identities=24%  Similarity=0.424  Sum_probs=64.3

Q ss_pred             CEEeCCEEEEccCCccCCch----------hhhcCCccc-CCCEEeCCCCCCCCCceEEeccccccCCccCCcccccchH
Q 012165          273 STIDADTIVIGIGAKPTVSP----------FERVGLNSS-VGGIQVDGQFRTRMPGIFAIGDVAAFPLKMYDRTARVEHV  341 (469)
Q Consensus       273 ~~i~~D~vi~a~G~~p~~~~----------~~~~gl~~~-~g~i~Vd~~~~t~~~~Vfa~GD~a~~~~~~~~~~~~~~~~  341 (469)
                      +.+++|.+++++|.+|....          |+.++++.+ +|.|.||+++|||.|+|||+|||+..+.          ..
T Consensus       148 e~i~~~~i~ia~G~~p~~~~~~~~~~~~l~l~~~gv~~~~~G~I~vd~~~~Ts~~~iyA~GDv~~~~~----------~~  217 (240)
T d1feca1         148 ETLDTEYILLATGSWPQHLGIEVPRSQTLQLEKAGVEVAKNGAIKVDAYSKTNVDNIYAIGDVTDRVM----------LT  217 (240)
T ss_dssp             EEEEEEEEEECCCEEECCCCSBEESCTTSCGGGGTCCBCTTSCBCCCTTCBCSSTTEEECGGGGCSCC----------CH
T ss_pred             EEEecceEEEecCCceeEccccccccCCCCccccCeEECCCCcEEcCcccCcCCCCEEEEEECCCCcc----------ch
Confidence            46899999999999887431          567788876 5789999999999999999999997654          23


Q ss_pred             HHHHHHHHHHHHHHhcCCC
Q 012165          342 DHARQSAQHCIKALLSAQT  360 (469)
Q Consensus       342 ~~A~~~a~~~a~~i~~~~~  360 (469)
                      ..|..+|+.+|+++++..+
T Consensus       218 ~~A~~eg~~aa~~~~~~~~  236 (240)
T d1feca1         218 PVAINEGAAFVDTVFANKP  236 (240)
T ss_dssp             HHHHHHHHHHHHHHHSSCC
T ss_pred             hhHHHHHHHHHHHHhCCCC
Confidence            3489999999999997543

>d1h6va1 c.3.1.5 (A:10-170,A:293-366) Mammalian thioredoxin reductase {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Mammalian thioredoxin reductase
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=99.58  E-value=1.2e-14  Score=131.39  Aligned_cols=139  Identities=22%  Similarity=0.358  Sum_probs=104.5

Q ss_pred             eEEEEcCChHHHHHHHHHHhCCCeEe------------------------------------------------------
Q 012165          209 KVVVVGGGYIGMEVAAAAVGWKLDTT------------------------------------------------------  234 (469)
Q Consensus       209 ~vvVvG~G~~g~e~A~~l~~~g~~v~------------------------------------------------------  234 (469)
                      .++|||+|+.|+.+|.++++.|.+|.                                                      
T Consensus         5 DviVIG~GpaGl~aA~~aa~~G~kV~viE~~~~~~~~~~~~~GG~c~~~g~~~~k~l~~~~~~~~~~~~~~~~gi~~~~~   84 (235)
T d1h6va1           5 DLIIIGGGSGGLAAAKEAAKFDKKVMVLDFVTPTPLGTNWGLGGTCVNVGCIPKKLMHQAALLGQALKDSRNYGWKLEDT   84 (235)
T ss_dssp             EEEEECCSHHHHHHHHHHGGGCCCEEEECCCCCCTTCCCCCTTHHHHHHSHHHHHHHHHHHHHHHHHHHTTTTTBCCCSC
T ss_pred             CEEEECCCHHHHHHHHHHHHCCCeEEEEeccCCCCcccccccccccccccccchhhhhhhhhhhhHhhhhhccccccccc
Confidence            58999999999999999999998876                                                      


Q ss_pred             ---------------------eeHHHHHHcCcEEEcCCeEEEEEeCCCCcEEEEEcCCCC--EEeCCEEEEccCCccCCc
Q 012165          235 ---------------------RYEQLYQQNGVKFVKGASIKNLEAGSDGRVAAVKLEDGS--TIDADTIVIGIGAKPTVS  291 (469)
Q Consensus       235 ---------------------~~~~~l~~~gV~~~~~~~v~~i~~~~~~~v~~v~~~~g~--~i~~D~vi~a~G~~p~~~  291 (469)
                                           .+...+++.+|+++.+..  .+..  .+. ..+...++.  .+.++.+++++|.+|...
T Consensus        85 ~~~d~~~~~~~~~~~i~~l~~g~~~~l~~~~V~vi~G~~--~~~~--~~~-~~v~~~~~~~~~i~a~~ivi~~G~~p~~~  159 (235)
T d1h6va1          85 VKHDWEKMTESVQNHIGSLNWGYRVALREKKVVYENAYG--KFIG--PHK-IMATNNKGKEKVYSAERFLIATGERPRYL  159 (235)
T ss_dssp             CCBCHHHHHHHHHHHHHHHHHHHHHHHHHHTCEEECCEE--EEEE--TTE-EEEECTTSCEEEEEEEEEEECCCEEECCC
T ss_pred             eeechhhhhheeeeeeeeccchhhhhhhccCceEEEeEE--eecc--ccc-eecccccccccccccccceeecCCCceeE
Confidence                                 234566778999987742  2321  222 245555554  588999999999998742


Q ss_pred             ----------hhhhcCCccc--CCCEEeCCCCCCCCCceEEeccccccCCccCCcccccchHHHHHHHHHHHHHHHhcCC
Q 012165          292 ----------PFERVGLNSS--VGGIQVDGQFRTRMPGIFAIGDVAAFPLKMYDRTARVEHVDHARQSAQHCIKALLSAQ  359 (469)
Q Consensus       292 ----------~~~~~gl~~~--~g~i~Vd~~~~t~~~~Vfa~GD~a~~~~~~~~~~~~~~~~~~A~~~a~~~a~~i~~~~  359 (469)
                                .++..++..+  .|.|.||++||||+|+|||+|||+..+..         ....|..+|+.+|++|+++.
T Consensus       160 ~i~~~~~~~~~l~~~gv~l~~~~g~I~vd~~~~TsvpgIyA~GDv~~g~~~---------l~~~A~~eG~~aa~~~~g~~  230 (235)
T d1h6va1         160 GIRDSCTRTIGLETVGVKINEKTGKIPVTDEEQTNVPYIYAIGDILEGKLE---------LTPVAIQAGRLLAQRLYGGS  230 (235)
T ss_dssp             SSEEESCTTSCCTTTTCCCCSSSCCBCCCTTSBCSSTTEEECGGGBTTSCC---------CHHHHHHHHHHHHHHHHHCC
T ss_pred             EEeeccceeeccccceeeeccccCccccCCccccCCCCEEEEEeccCCCcc---------cHHHHHHHHHHHHHHHcCCC
Confidence                      2455666655  37899999999999999999999865422         22348999999999999865


Q ss_pred             CC
Q 012165          360 TH  361 (469)
Q Consensus       360 ~~  361 (469)
                      +.
T Consensus       231 ~~  232 (235)
T d1h6va1         231 TV  232 (235)
T ss_dssp             CC
T ss_pred             CC
Confidence            43

>d1xhca2 c.3.1.5 (A:104-225) NADH oxidase /nitrite reductase {Pyrococcus furiosus [TaxId: 2261]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: NADH oxidase /nitrite reductase
species: Pyrococcus furiosus [TaxId: 2261]

Probab=99.57  E-value=3.3e-15  Score=120.28  Aligned_cols=103  Identities=24%  Similarity=0.450  Sum_probs=89.6

Q ss_pred             CCcCCCCCCCCcCcEEEecCHHHHHHHHHhhhcCCeEEEEcCChHHHHHHHHHHhCCCeEe-----------------ee
Q 012165          174 ASRFPEKIGGYLPGVHYIRDVADADALISSLEKAKKVVVVGGGYIGMEVAAAAVGWKLDTT-----------------RY  236 (469)
Q Consensus       174 ~~~~~~~~g~~~~~v~~~~~~~~~~~~~~~~~~~~~vvVvG~G~~g~e~A~~l~~~g~~v~-----------------~~  236 (469)
                      |+ .|++||  .+.+++++++.+.+++.+.+..+++++|||||++|+|+|..|+++|.+|+                 .+
T Consensus         2 ~r-~p~ipG--~e~~~t~~~~~d~~~l~~~~~~~~~vvIiGgG~iG~E~A~~l~~~g~~Vtlv~~~~~l~~~d~~~~~~~   78 (122)
T d1xhca2           2 AR-EPQIKG--KEYLLTLRTIFDADRIKESIENSGEAIIIGGGFIGLELAGNLAEAGYHVKLIHRGAMFLGLDEELSNMI   78 (122)
T ss_dssp             EC-CCCSBT--GGGEECCCSHHHHHHHHHHHHHHSEEEEEECSHHHHHHHHHHHHTTCEEEEECSSSCCTTCCHHHHHHH
T ss_pred             CC-CcCCCC--ccceEccCCHHHHHHHHHHhhcCCcEEEECCcHHHHHHHHHhhcccceEEEEeccccccCCCHHHHHHH
Confidence            44 466777  46789999999999999988889999999999999999999999999998                 56


Q ss_pred             HHHHHHcCcEEEcCCeEEEEEeCCCCcEEEEEcCCCCEEeCCEEEEccCC
Q 012165          237 EQLYQQNGVKFVKGASIKNLEAGSDGRVAAVKLEDGSTIDADTIVIGIGA  286 (469)
Q Consensus       237 ~~~l~~~gV~~~~~~~v~~i~~~~~~~v~~v~~~~g~~i~~D~vi~a~G~  286 (469)
                      .+.|+++||++++++++.+++.  +    .+ +.+++.+++|.||+|+|.
T Consensus        79 ~~~l~~~GV~~~~~~~v~~~~~--~----~v-~~~~~~i~~D~vi~a~Gv  121 (122)
T d1xhca2          79 KDMLEETGVKFFLNSELLEANE--E----GV-LTNSGFIEGKVKICAIGI  121 (122)
T ss_dssp             HHHHHHTTEEEECSCCEEEECS--S----EE-EETTEEEECSCEEEECCE
T ss_pred             HHHHHHCCcEEEeCCEEEEEeC--C----EE-EeCCCEEECCEEEEEEEe
Confidence            7889999999999999999973  2    23 457789999999999995

>d1fcda1 c.3.1.5 (A:1-114,A:256-327) Flavocytochrome c sulfide dehydrogenase, FCSD, flavin-binding subunit {Purple phototrophic bacterium (Chromatium vinosum) [TaxId: 1049]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Flavocytochrome c sulfide dehydrogenase, FCSD, flavin-binding subunit
species: Purple phototrophic bacterium (Chromatium vinosum) [TaxId: 1049]

Probab=99.56  E-value=1.2e-14  Score=125.82  Aligned_cols=139  Identities=24%  Similarity=0.294  Sum_probs=102.8

Q ss_pred             CCeEEEEcCChHHHHHHHHHHhCCC--eEe----------------------------eeHHHHHHcCcEEEcCCeEEEE
Q 012165          207 AKKVVVVGGGYIGMEVAAAAVGWKL--DTT----------------------------RYEQLYQQNGVKFVKGASIKNL  256 (469)
Q Consensus       207 ~~~vvVvG~G~~g~e~A~~l~~~g~--~v~----------------------------~~~~~l~~~gV~~~~~~~v~~i  256 (469)
                      +|+|+|||+|++|+|+|..|.+++.  +++                            .....+...++.+..+. +..+
T Consensus         2 gkrivIvGgG~~G~e~A~~l~~~~~~~~Vtlie~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~-~~~~   80 (186)
T d1fcda1           2 GRKVVVVGGGTGGATAAKYIKLADPSIEVTLIEPNTDYYTCYLSNEVIGGDRKLESIKHGYDGLRAHGIQVVHDS-ATGI   80 (186)
T ss_dssp             CCEEEEECCSHHHHHHHHHHHHHCTTSEEEEECSCSCEECSTTHHHHHHTSSCGGGGEECSHHHHTTTEEEECCC-EEEC
T ss_pred             CCcEEEECccHHHHHHHHHHHHcCCCCcEEEEECCCccccccccccccchhhhhhhhhhhhhhccccceeEeeee-eEee
Confidence            7899999999999999999999875  444                            33455667788888764 3333


Q ss_pred             EeCCCCcEEEEEcCCCCEEeCCEEEEccCCccCCchhhhc--------CCcccCCCEEeCCC-CC-CCCCceEEeccccc
Q 012165          257 EAGSDGRVAAVKLEDGSTIDADTIVIGIGAKPTVSPFERV--------GLNSSVGGIQVDGQ-FR-TRMPGIFAIGDVAA  326 (469)
Q Consensus       257 ~~~~~~~v~~v~~~~g~~i~~D~vi~a~G~~p~~~~~~~~--------gl~~~~g~i~Vd~~-~~-t~~~~Vfa~GD~a~  326 (469)
                      .  ....  .+.+.+++++++|.+|+|+|.+|++.++...        ++..+.+++.++.+ ++ ++.++||++||++.
T Consensus        81 ~--~~~~--~~~~~~~~~i~~D~li~atG~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~iGd~~~  156 (186)
T d1fcda1          81 D--PDKK--LVKTAGGAEFGYDRCVVAPGIELIYDKIEQRAGKIAQIAGLTNDAGWCPVDIKTFESSIHKGIHVIGDASI  156 (186)
T ss_dssp             C--TTTT--EEEETTSCEEECSEEEECCCEEECCTTSTEEECHHHHHHTCCCTTSSEEBCSSSCBBSSSTTEEECTTSEE
T ss_pred             e--eccc--eeecccceeeccceEEEEeccccchhhhhhhhhhheeccCcccccccccceeeeeecccccCceEeccccc
Confidence            3  2222  4677899999999999999999998765432        44455667777643 33 58999999999986


Q ss_pred             cCCccCCcccccchHHHHHHHHHHHHHHHhc
Q 012165          327 FPLKMYDRTARVEHVDHARQSAQHCIKALLS  357 (469)
Q Consensus       327 ~~~~~~~~~~~~~~~~~A~~~a~~~a~~i~~  357 (469)
                      ....       ..++..|..||+.+|+||..
T Consensus       157 ~~~~-------p~~~~~A~~q~~~~A~ni~~  180 (186)
T d1fcda1         157 ANPM-------PKSGYSANSQGKVAAAAVVV  180 (186)
T ss_dssp             CTTC-------CSSHHHHHHHHHHHHHHHHH
T ss_pred             cCCC-------CchHhHHHHHHHHHHHHHHH
Confidence            5321       12466799999999999974

>d3lada1 c.3.1.5 (A:1-158,A:278-348) Dihydrolipoamide dehydrogenase {Azotobacter vinelandii [TaxId: 354]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Dihydrolipoamide dehydrogenase
species: Azotobacter vinelandii [TaxId: 354]

Probab=99.54  E-value=1.6e-14  Score=129.75  Aligned_cols=136  Identities=26%  Similarity=0.392  Sum_probs=103.0

Q ss_pred             eEEEEcCChHHHHHHHHHHhCCCeEe------------------------------------------------------
Q 012165          209 KVVVVGGGYIGMEVAAAAVGWKLDTT------------------------------------------------------  234 (469)
Q Consensus       209 ~vvVvG~G~~g~e~A~~l~~~g~~v~------------------------------------------------------  234 (469)
                      .++|||+|+.|+.+|.++++.|.+|.                                                      
T Consensus         5 DviIIGgGpAGl~aA~~aar~G~~V~viE~~~~~~~~~~~gg~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~gi~~~~~~   84 (229)
T d3lada1           5 DVIVIGAGPGGYVAAIKSAQLGLKTALIEKYKGKEGKTALGGTCLNVGCIPSKALLDSSYKFHEAHESFKLHGISTGEVA   84 (229)
T ss_dssp             SEEEECCSHHHHHHHHHHHHHTCCEEEEECCBCTTSSBCCSHHHHHHSHHHHHHHHHHHHHHHHHHTTSGGGTEECSCCE
T ss_pred             CEEEECcCHHHHHHHHHHHHCCCeEEEEecccCCCccccccccccccccchhhhhhhhhhhhhhhhhhhhhcccccCcce
Confidence            58999999999999999999998875                                                      


Q ss_pred             -------------------eeHHHHHHcCcEEEcCCeEEEEEeCCCCcEEEEEcCCC--CEEeCCEEEEccCCccCCc--
Q 012165          235 -------------------RYEQLYQQNGVKFVKGASIKNLEAGSDGRVAAVKLEDG--STIDADTIVIGIGAKPTVS--  291 (469)
Q Consensus       235 -------------------~~~~~l~~~gV~~~~~~~v~~i~~~~~~~v~~v~~~~g--~~i~~D~vi~a~G~~p~~~--  291 (469)
                                         .+...++..||+++.+.....   . .... .....++  ..+.++.+++++|.+|...  
T Consensus        85 ~d~~~~~~~~~~~~~~~~~~~~~~~~~~gV~vi~G~~~~~---~-~~~~-~~~~~~~~~~~~~~~~~i~atG~~~~~~~~  159 (229)
T d3lada1          85 IDVPTMIARKDQIVRNLTGGVASLIKANGVTLFEGHGKLL---A-GKKV-EVTAADGSSQVLDTENVILASGSKPVEIPR  159 (229)
T ss_dssp             ECHHHHHHHHHHHHHHHHHHHHHHHHHHTCEEEESEEEEC---S-TTCE-EEECTTSCEEEECCSCEEECCCEEECCCTE
T ss_pred             eecchhhhhhhHHHHHhhhhHHHHhhcCCeEEEEeEEccc---c-ccee-eccccCccceeeecccccccCCcccccccc
Confidence                               234566778999887642211   1 1111 2333333  4688999999999887643  


Q ss_pred             -------hhhhcCCccc-CCCEEeCCCCCCCCCceEEeccccccCCccCCcccccchHHHHHHHHHHHHHHHhcCC
Q 012165          292 -------PFERVGLNSS-VGGIQVDGQFRTRMPGIFAIGDVAAFPLKMYDRTARVEHVDHARQSAQHCIKALLSAQ  359 (469)
Q Consensus       292 -------~~~~~gl~~~-~g~i~Vd~~~~t~~~~Vfa~GD~a~~~~~~~~~~~~~~~~~~A~~~a~~~a~~i~~~~  359 (469)
                             +++++|+..+ +|+|.||+++||+.|+|||+|||...+.          ....|..+|+.+|++|+++.
T Consensus       160 ~~~~~~~~~~~~gv~l~~~G~i~vd~~~~T~vpgiyA~GDv~~g~~----------l~~~A~~~G~~aa~~i~g~~  225 (229)
T d3lada1         160 RPVTTDLLAADSGVTLDERGFIYVDDYCATSVPGVYAIGDVVRGAM----------LAHKASEEGVVVAERIAGHK  225 (229)
T ss_dssp             EECCTTCCSSCCSCCBCTTSCBCCCTTSBCSSTTEEECGGGSSSCC----------CHHHHHHHHHHHHHHHHHCC
T ss_pred             cccccccchHhcCeeecCCCcEEecccccCCCCCEEEEeCCcchHH----------HHHHHHHHHHHHHHHHcCCC
Confidence                   4667788876 6789999999999999999999987654          23458889999999999754

>d1m6ia2 c.3.1.5 (A:264-400) Apoptosis-inducing factor (AIF) {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Apoptosis-inducing factor (AIF)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.53  E-value=1.2e-14  Score=119.40  Aligned_cols=99  Identities=24%  Similarity=0.476  Sum_probs=87.1

Q ss_pred             CcEEEecCHHHHHHHHHhhhcCCeEEEEcCChHHHHHHHHHH----hCCCeEe-------------------eeHHHHHH
Q 012165          186 PGVHYIRDVADADALISSLEKAKKVVVVGGGYIGMEVAAAAV----GWKLDTT-------------------RYEQLYQQ  242 (469)
Q Consensus       186 ~~v~~~~~~~~~~~~~~~~~~~~~vvVvG~G~~g~e~A~~l~----~~g~~v~-------------------~~~~~l~~  242 (469)
                      +.++.++++.|+.++.+..+.+++++|||||++|+|+|..|.    ..|.+|+                   .+.+.+++
T Consensus        16 ~~~~~~r~~~d~~~l~~~~~~~k~i~IvGgG~~G~E~A~~l~~~~~~~g~~Vt~i~~~~~~l~~~~~~~~~~~~~~~l~~   95 (137)
T d1m6ia2          16 SRTTLFRKIGDFRSLEKISREVKSITIIGGGFLGSELACALGRKARALGTEVIQLFPEKGNMGKILPEYLSNWTMEKVRR   95 (137)
T ss_dssp             HTEEECCSHHHHHHHHHHHHHCSEEEEECCSHHHHHHHHHHHHHHHHHTCEEEEECSSSSTTTTTSCHHHHHHHHHHHHT
T ss_pred             CcEEEEcCHHHHHHHHHHhhcCCEEEEECCCHHHHHHHHHHHHHHHhcCCEEEEecccccCCcccCCHHHHHHHHHHHHh
Confidence            568899999999999998889999999999999999999985    4577876                   56788999


Q ss_pred             cCcEEEcCCeEEEEEeCCCCcEEEEEcCCCCEEeCCEEEEccCC
Q 012165          243 NGVKFVKGASIKNLEAGSDGRVAAVKLEDGSTIDADTIVIGIGA  286 (469)
Q Consensus       243 ~gV~~~~~~~v~~i~~~~~~~v~~v~~~~g~~i~~D~vi~a~G~  286 (469)
                      +||++++++.|++++.+ ++.+ .++++||+++++|.||+|+|.
T Consensus        96 ~GV~~~~~~~V~~i~~~-~~~~-~v~l~~G~~i~aD~Vi~A~Gv  137 (137)
T d1m6ia2          96 EGVKVMPNAIVQSVGVS-SGKL-LIKLKDGRKVETDHIVAAVGL  137 (137)
T ss_dssp             TTCEEECSCCEEEEEEE-TTEE-EEEETTSCEEEESEEEECCCE
T ss_pred             CCcEEEeCCEEEEEEec-CCEE-EEEECCCCEEECCEEEEeecC
Confidence            99999999999999864 4444 689999999999999999994

>d1gesa2 c.3.1.5 (A:147-262) Glutathione reductase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Glutathione reductase
species: Escherichia coli [TaxId: 562]

Probab=99.53  E-value=1.8e-14  Score=114.76  Aligned_cols=88  Identities=27%  Similarity=0.482  Sum_probs=76.9

Q ss_pred             HHHHHHhhhcCCeEEEEcCChHHHHHHHHHHhCCCeEe------------------eeHHHHHHcCcEEEcCCeEEEEEe
Q 012165          197 ADALISSLEKAKKVVVVGGGYIGMEVAAAAVGWKLDTT------------------RYEQLYQQNGVKFVKGASIKNLEA  258 (469)
Q Consensus       197 ~~~~~~~~~~~~~vvVvG~G~~g~e~A~~l~~~g~~v~------------------~~~~~l~~~gV~~~~~~~v~~i~~  258 (469)
                      ++.+......+++++|||+|++|+|+|..|+++|.+++                  .+.+.++++||++++++.+++++.
T Consensus        11 ~~~~~~l~~~p~~vvIiGgG~ig~E~A~~l~~~G~~Vtlve~~~~~l~~~d~~~~~~~~~~l~~~GV~~~~~~~v~~i~~   90 (116)
T d1gesa2          11 SDGFFALPALPERVAVVGAGYIGVELGGVINGLGAKTHLFEMFDAPLPSFDPMISETLVEVMNAEGPQLHTNAIPKAVVK   90 (116)
T ss_dssp             HHHHHHCSSCCSEEEEECCSHHHHHHHHHHHHTTCEEEEECSSSSSSTTSCHHHHHHHHHHHHHHSCEEECSCCEEEEEE
T ss_pred             HHHHhChhhCCCEEEEECCChhhHHHHHHhhccccEEEEEeecchhhhhcchhhHHHHHHHHHHCCCEEEeCCEEEEEEE
Confidence            34444445578999999999999999999999999998                  668889999999999999999997


Q ss_pred             CCCCcEEEEEcCCCCEEeCCEEEEccC
Q 012165          259 GSDGRVAAVKLEDGSTIDADTIVIGIG  285 (469)
Q Consensus       259 ~~~~~v~~v~~~~g~~i~~D~vi~a~G  285 (469)
                      .+++.+ .+.+++|+++++|.||+|+|
T Consensus        91 ~~~~~~-~v~~~~g~~~~~D~vi~a~G  116 (116)
T d1gesa2          91 NTDGSL-TLELEDGRSETVDCLIWAIG  116 (116)
T ss_dssp             CTTSCE-EEEETTSCEEEESEEEECSC
T ss_pred             cCCcEE-EEEECCCCEEEcCEEEEecC
Confidence            766665 58899999999999999998

>d1ojta1 c.3.1.5 (A:117-275,A:401-470) Dihydrolipoamide dehydrogenase {Neisseria meningitidis [TaxId: 487]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Dihydrolipoamide dehydrogenase
species: Neisseria meningitidis [TaxId: 487]

Probab=99.47  E-value=1.5e-13  Score=123.62  Aligned_cols=76  Identities=26%  Similarity=0.447  Sum_probs=58.6

Q ss_pred             EEeCCEEEEccCC-ccCCc--hhhhcCCccc-CCCEEeCCCCCCCCCceEEeccccccCCccCCcccccchHHHHHHHHH
Q 012165          274 TIDADTIVIGIGA-KPTVS--PFERVGLNSS-VGGIQVDGQFRTRMPGIFAIGDVAAFPLKMYDRTARVEHVDHARQSAQ  349 (469)
Q Consensus       274 ~i~~D~vi~a~G~-~p~~~--~~~~~gl~~~-~g~i~Vd~~~~t~~~~Vfa~GD~a~~~~~~~~~~~~~~~~~~A~~~a~  349 (469)
                      ...+|-++++.|. .|++.  .++..|++.+ +|+|.||++||||+|+|||+|||+..+.          ....|..+|+
T Consensus       146 ~~~~~~~~l~~~~~~~~~~~~~~e~~g~~~d~~G~I~vd~~~~TsvpgVyAaGDv~~~~~----------l~~~A~~eG~  215 (229)
T d1ojta1         146 IVAFKNCIIAAGSRAPNGKLISAEKAGVAVTDRGFIEVDKQMRTNVPHIYAIGDIVGQPM----------LAHKAVHEGH  215 (229)
T ss_dssp             EEEEEEEEECCCEEEECGGGTTGGGTTCCCCTTSCCCCCTTSBCSSTTEEECGGGTCSSC----------CHHHHHHHHH
T ss_pred             ceecceEEEEecccCCcccccchhhhCccCCCCCCEEcCCCccCCCCCEEEEEecCCCcc----------hHHHHHHHHH
Confidence            4556566666554 45543  4788899876 6789999999999999999999997653          2334899999


Q ss_pred             HHHHHHhcCC
Q 012165          350 HCIKALLSAQ  359 (469)
Q Consensus       350 ~~a~~i~~~~  359 (469)
                      .+|.+|+++.
T Consensus       216 ~Aa~~i~G~~  225 (229)
T d1ojta1         216 VAAENCAGHK  225 (229)
T ss_dssp             HHHHHHTTCC
T ss_pred             HHHHHHcCCC
Confidence            9999999743

>d1onfa2 c.3.1.5 (A:154-270) Glutathione reductase {Plasmodium falciparum [TaxId: 5833]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Glutathione reductase
species: Plasmodium falciparum [TaxId: 5833]

Probab=99.45  E-value=2.9e-13  Score=107.51  Aligned_cols=80  Identities=24%  Similarity=0.438  Sum_probs=71.0

Q ss_pred             hhcCCeEEEEcCChHHHHHHHHHHhCCCeEe------------------eeHHHHHHcCcEEEcCCeEEEEEeCCCCcEE
Q 012165          204 LEKAKKVVVVGGGYIGMEVAAAAVGWKLDTT------------------RYEQLYQQNGVKFVKGASIKNLEAGSDGRVA  265 (469)
Q Consensus       204 ~~~~~~vvVvG~G~~g~e~A~~l~~~g~~v~------------------~~~~~l~~~gV~~~~~~~v~~i~~~~~~~v~  265 (469)
                      ++.+++++|||||++|+|+|..|+++|.+|+                  .+.+.++++||++++++.+++++..+++.+ 
T Consensus        19 l~~p~~v~IiGgG~iG~E~A~~l~~~g~~Vtlv~~~~~il~~~d~~~~~~~~~~l~~~gV~i~~~~~v~~i~~~~~~~~-   97 (117)
T d1onfa2          19 IKESKKIGIVGSGYIAVELINVIKRLGIDSYIFARGNRILRKFDESVINVLENDMKKNNINIVTFADVVEIKKVSDKNL-   97 (117)
T ss_dssp             CCCCSEEEEECCSHHHHHHHHHHHTTTCEEEEECSSSSSCTTSCHHHHHHHHHHHHHTTCEEECSCCEEEEEESSTTCE-
T ss_pred             cCCCCEEEEECCchHHHHHHHHHHhccccceeeehhccccccccHHHHHHHHHHHHhCCCEEEECCEEEEEEEcCCCeE-
Confidence            3458999999999999999999999999998                  667889999999999999999997766665 


Q ss_pred             EEEcCCCCEEe-CCEEEEcc
Q 012165          266 AVKLEDGSTID-ADTIVIGI  284 (469)
Q Consensus       266 ~v~~~~g~~i~-~D~vi~a~  284 (469)
                      .+.+++|+.++ +|.||+|+
T Consensus        98 ~v~~~~G~~~~~~D~Vi~AI  117 (117)
T d1onfa2          98 SIHLSDGRIYEHFDHVIYCV  117 (117)
T ss_dssp             EEEETTSCEEEEESEEEECC
T ss_pred             EEEECCCCEEEeCCEEEEeC
Confidence            68999998874 79999985

>d1vdca1 c.3.1.5 (A:1-117,A:244-316) Thioredoxin reductase {Mouse-ear cress (Arabidopsis thaliana) [TaxId: 3702]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Thioredoxin reductase
species: Mouse-ear cress (Arabidopsis thaliana) [TaxId: 3702]

Probab=99.45  E-value=3.7e-13  Score=117.47  Aligned_cols=136  Identities=20%  Similarity=0.316  Sum_probs=98.4

Q ss_pred             cCCeEEEEcCChHHHHHHHHHHhCCCeEe---------------------------------------eeHHHHHHcCcE
Q 012165          206 KAKKVVVVGGGYIGMEVAAAAVGWKLDTT---------------------------------------RYEQLYQQNGVK  246 (469)
Q Consensus       206 ~~~~vvVvG~G~~g~e~A~~l~~~g~~v~---------------------------------------~~~~~l~~~gV~  246 (469)
                      ..++|+|||||++|+++|.++++.|.++.                                       .+.+..++.|++
T Consensus         4 ~~~~VvIIGgGpaGl~aA~~~ar~g~~v~vie~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~el~~~~~~q~~~~g~~   83 (192)
T d1vdca1           4 HNTRLCIVGSGPAAHTAAIYAARAELKPLLFEGWMANDIAPGGQLTTTTDVENFPGFPEGILGVELTDKFRKQSERFGTT   83 (192)
T ss_dssp             EEEEEEEECCSHHHHHHHHHHHHTTCCCEEECCSSBTTBCTTCGGGGCSEECCSTTCTTCEEHHHHHHHHHHHHHHTTCE
T ss_pred             ccceEEEECCCHHHHHHHHHHHHcCCcEEEEEeecccccccccccccchhhhccccccccccchHHHHHHHHHHHhhcce
Confidence            35789999999999999999999887765                                       223344667999


Q ss_pred             EEcCCeEEEEEeCCCCcEEEEEcCCCCEEeCCEEEEccCC-----ccCCchhhhcCCccc-CCCEEeCC-CCCCCCCceE
Q 012165          247 FVKGASIKNLEAGSDGRVAAVKLEDGSTIDADTIVIGIGA-----KPTVSPFERVGLNSS-VGGIQVDG-QFRTRMPGIF  319 (469)
Q Consensus       247 ~~~~~~v~~i~~~~~~~v~~v~~~~g~~i~~D~vi~a~G~-----~p~~~~~~~~gl~~~-~g~i~Vd~-~~~t~~~~Vf  319 (469)
                      +..+ .|.+++..++.  ..+. .+.....+|.+++++|.     .|++.++++ +++.+ +|.|.+|+ +++|+.|+||
T Consensus        84 i~~~-~V~~~~~~~~~--~~v~-~~~~~~~~~~~~~a~g~~~~g~~p~~~~~~~-~veld~~G~i~~~~~~~~Ts~~GV~  158 (192)
T d1vdca1          84 IFTE-TVTKVDFSSKP--FKLF-TDSKAILADAVILAIGAVAKGHEPATKFLDG-GVELDSDGYVVTKPGTTQTSVPGVF  158 (192)
T ss_dssp             EECC-CCCEEECSSSS--EEEE-CSSEEEEEEEEEECCCEEECCEEESCGGGTT-SSCBCTTSCBCCCTTSCBCSSTTEE
T ss_pred             eeee-eEEecccccCc--EEec-ccceeeeeeeEEEEeeeeecccCchHHHhcC-ceeecCCCeEEeCCCceEecCCCEE
Confidence            8866 57888754333  2344 34457899999999985     577777654 46655 67888885 8999999999


Q ss_pred             EeccccccCCccCCcccccchHHHHHHHHHHHHHHH
Q 012165          320 AIGDVAAFPLKMYDRTARVEHVDHARQSAQHCIKAL  355 (469)
Q Consensus       320 a~GD~a~~~~~~~~~~~~~~~~~~A~~~a~~~a~~i  355 (469)
                      |+|||...+..         ....|...|..+|.++
T Consensus       159 a~GDv~~~~~r---------~~v~A~g~G~~aA~~~  185 (192)
T d1vdca1         159 AAGDVQDKKYR---------QAITAAGTGCMAALDA  185 (192)
T ss_dssp             ECGGGGCSSCC---------CHHHHHHHHHHHHHHH
T ss_pred             EeeecCCcccc---------eEEEEEechHHHHHHH
Confidence            99999986542         1223555666666554

>d1feca2 c.3.1.5 (A:170-286) Trypanothione reductase {Crithidia fasciculata [TaxId: 5656]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Trypanothione reductase
species: Crithidia fasciculata [TaxId: 5656]

Probab=99.44  E-value=1.6e-13  Score=109.43  Aligned_cols=89  Identities=24%  Similarity=0.410  Sum_probs=74.6

Q ss_pred             HHHHHHhhhcCCeEEEEcCChHHHHHHHHHHhC---CCeEe------------------eeHHHHHHcCcEEEcCCeEEE
Q 012165          197 ADALISSLEKAKKVVVVGGGYIGMEVAAAAVGW---KLDTT------------------RYEQLYQQNGVKFVKGASIKN  255 (469)
Q Consensus       197 ~~~~~~~~~~~~~vvVvG~G~~g~e~A~~l~~~---g~~v~------------------~~~~~l~~~gV~~~~~~~v~~  255 (469)
                      ++.+......+++++|||||++|+|+|..+.++   |.+|+                  .+++.++++||++++++.+++
T Consensus         8 s~~~~~l~~~p~~v~IiGgG~ig~E~A~~l~~~~~~g~~Vtli~~~~~il~~~d~~~~~~~~~~l~~~GI~v~~~~~v~~   87 (117)
T d1feca2           8 SNEAFYLDEAPKRALCVGGGYISIEFAGIFNAYKARGGQVDLAYRGDMILRGFDSELRKQLTEQLRANGINVRTHENPAK   87 (117)
T ss_dssp             HHHHTTCSSCCSEEEEECSSHHHHHHHHHHHHHSCTTCEEEEEESSSSSSTTSCHHHHHHHHHHHHHTTEEEEETCCEEE
T ss_pred             hHHhhCccccCCeEEEECCChHHHHHHHHhHhhcccccccceecccccccccccchhhHHHHHHHhhCcEEEEcCCEEEE
Confidence            344444445689999999999999999877654   77777                  667889999999999999999


Q ss_pred             EEeCCCCcEEEEEcCCCCEEeCCEEEEccCC
Q 012165          256 LEAGSDGRVAAVKLEDGSTIDADTIVIGIGA  286 (469)
Q Consensus       256 i~~~~~~~v~~v~~~~g~~i~~D~vi~a~G~  286 (469)
                      ++..+++.. .+.++||++++||.||+|+|+
T Consensus        88 i~~~~~g~~-~v~~~~g~~i~~D~Vi~a~GR  117 (117)
T d1feca2          88 VTKNADGTR-HVVFESGAEADYDVVMLAIGR  117 (117)
T ss_dssp             EEECTTSCE-EEEETTSCEEEESEEEECSCE
T ss_pred             EEECCCCEE-EEEECCCCEEEcCEEEEecCC
Confidence            987656654 689999999999999999995

>d1d7ya1 c.3.1.5 (A:5-115,A:237-308) NADH-dependent ferredoxin reductase, BphA4 {Pseudomonas sp., KKS102 [TaxId: 306]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: NADH-dependent ferredoxin reductase, BphA4
species: Pseudomonas sp., KKS102 [TaxId: 306]

Probab=99.43  E-value=1.4e-13  Score=119.27  Aligned_cols=109  Identities=26%  Similarity=0.437  Sum_probs=88.2

Q ss_pred             CCCcEEEEcCcHHHHHHHHHHHHcCCCCCcEEEEcCCCCCCCCCCCCcccccCCCCCCCCCCCCCccccCCCCCCCCHhH
Q 012165           50 ENREFVIVGGGNAAGYAARTFVEHGMADGRLCIVSKEAYAPYERPALTKGYLFPLDKKPARLPGFHTCVGSGGERQTPEW  129 (469)
Q Consensus        50 ~~~~vvIIGgG~AGl~aA~~L~~~g~~~~~V~vie~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  129 (469)
                      ++.+|+|||||++|+.+|..|++.|. +..|++++++...+|.++.+++.+........                .....
T Consensus         2 m~a~VvIIGgG~~G~e~A~~l~~~g~-~v~i~~~~~~~~~~~~~~~l~~~~~~~~~~~~----------------~~~~~   64 (183)
T d1d7ya1           2 LKAPVVVLGAGLASVSFVAELRQAGY-QGLITVVGDEAERPYDRPPLSKDFMAHGDAEK----------------IRLDC   64 (183)
T ss_dssp             CCSSEEEECCSHHHHHHHHHHHHHTC-CSCEEEEESSCSCCBCSGGGGTTHHHHCCGGG----------------SBCCG
T ss_pred             CCCCEEEECccHHHHHHHHHHHhcCC-ceEEEEEecccccchhhHHHhhhhhhhhhhhh----------------HHHHH
Confidence            34579999999999999999999997 78899999999988988887764432111110                01123


Q ss_pred             HHHCCcEEEeCCcEEEEeCCCcEEEeCCCeEEEeccEEeccCCCCC
Q 012165          130 YKEKGIEMIYQDPVTSIDIEKQTLITNSGKLLKYGSLIVATGCTAS  175 (469)
Q Consensus       130 ~~~~~i~~~~~~~v~~id~~~~~v~~~~g~~~~yd~lVlAtG~~~~  175 (469)
                      +...+++++.+.++..++.+...+++.+|++++||.||+|+|..|+
T Consensus        65 ~~~~~i~~~~~~~v~~i~~~~~~~~~~~g~~~~~D~vi~a~G~~p~  110 (183)
T d1d7ya1          65 KRAPEVEWLLGVTAQSFDPQAHTVALSDGRTLPYGTLVLATGAAPR  110 (183)
T ss_dssp             GGSTTCEEEETCCEEEEETTTTEEEETTSCEEECSEEEECCCEEEC
T ss_pred             hhcCCeEEEEeccccccccccceeEecCCcEeeeeeEEEEEEEEcc
Confidence            4567899999999999999999999999999999999999998875

>d1v59a1 c.3.1.5 (A:1-160,A:283-355) Dihydrolipoamide dehydrogenase {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Dihydrolipoamide dehydrogenase
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=99.42  E-value=1e-12  Score=118.01  Aligned_cols=137  Identities=27%  Similarity=0.496  Sum_probs=97.7

Q ss_pred             CeEEEEcCChHHHHHHHHHHhCCCeEe-----------------------------------------------------
Q 012165          208 KKVVVVGGGYIGMEVAAAAVGWKLDTT-----------------------------------------------------  234 (469)
Q Consensus       208 ~~vvVvG~G~~g~e~A~~l~~~g~~v~-----------------------------------------------------  234 (469)
                      -.|+|||+|+.|+.+|..++++|.+|.                                                     
T Consensus         6 yDviVIG~GpAGl~aA~~aa~~G~kV~lie~~~~~GG~~~~~g~~p~~~~~~~~~~~~~~~~~~~~~Gi~~~~~~~~~~~   85 (233)
T d1v59a1           6 HDVVIIGGGPAGYVAAIKAAQLGFNTACVEKRGKLGGTCLNVGCIPSKALLNNSHLFHQMHTEAQKRGIDVNGDIKINVA   85 (233)
T ss_dssp             EEEEEECCSHHHHHHHHHHHHTTCCEEEEESSSSSSHHHHHHSHHHHHHHHHHHHHHHHHHHTSGGGTEEECSCEEECHH
T ss_pred             cCEEEECCCHHHHHHHHHHHHCCCcEEEEEecCCcceEeEEeeccccccccccchhHHHhhhhHhhcCeeEeeceecchh
Confidence            368999999999999999999999986                                                     


Q ss_pred             ---------------eeHHHHHHcCcEEEcCCeEEEEEeCCCCcEEEEEcCCC--------CEEeCCE--------EEEc
Q 012165          235 ---------------RYEQLYQQNGVKFVKGASIKNLEAGSDGRVAAVKLEDG--------STIDADT--------IVIG  283 (469)
Q Consensus       235 ---------------~~~~~l~~~gV~~~~~~~v~~i~~~~~~~v~~v~~~~g--------~~i~~D~--------vi~a  283 (469)
                                     ....+.++.+|+++.+.  -++.  +... ..+....+        ..++++.        .+.+
T Consensus        86 ~~~~~~~~~i~~~~~~~~~l~~~~~v~~~~G~--a~f~--~~~~-~~v~~~~~~~~~~~~~~~~~~~~i~i~~~~~~~~~  160 (233)
T d1v59a1          86 NFQKAKDDAVKQLTGGIELLFKKNKVTYYKGN--GSFE--DETK-IRVTPVDGLEGTVKEDHILDVKNIIVATGSEVTPF  160 (233)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHTTCEEEESE--EEES--SSSE-EEEECCTTCTTCCSSCEEEEEEEEEECCCEEECCC
T ss_pred             hhhheeeeEEEEeecceeeeeccCCeEEEEEE--EEEe--cCCC-cEEEecccccceeeeeeeccCCeEEEeccccccee
Confidence                           22344556677776542  1121  1111 12222222        1234444        4448


Q ss_pred             cCCccCCch--hhhcCCccc-CCCEEeCCCCCCCCCceEEeccccccCCccCCcccccchHHHHHHHHHHHHHHHhcCC
Q 012165          284 IGAKPTVSP--FERVGLNSS-VGGIQVDGQFRTRMPGIFAIGDVAAFPLKMYDRTARVEHVDHARQSAQHCIKALLSAQ  359 (469)
Q Consensus       284 ~G~~p~~~~--~~~~gl~~~-~g~i~Vd~~~~t~~~~Vfa~GD~a~~~~~~~~~~~~~~~~~~A~~~a~~~a~~i~~~~  359 (469)
                      +|++|+++.  ++++|++.+ +|+|.||++++|+.|+|||+||++..+.          ....|..+|..+|++|+++.
T Consensus       161 ~G~~p~~~~l~l~~~gv~~~~~g~i~vd~~~~T~~~~v~A~GD~~~g~~----------l~~~a~~~G~~aa~~i~~~~  229 (233)
T d1v59a1         161 VGRRPYIAGLGAEKIGLEVDKRGRLVIDDQFNSKFPHIKVVGDVTFGPM----------LAHKAEEEGIAAVEMLKTGH  229 (233)
T ss_dssp             SCEEECCTTSCTTTTTCCBCTTSCBCCCTTSBCSSTTEEECGGGSSSCC----------CHHHHHHHHHHHHHHHHHSC
T ss_pred             cccccCCCCcCchhcCeEEcCCCcEEECCeEecCCCCEEEEcCCcccHH----------HHHHHHHHHHHHHHHHccCC
Confidence            999999884  578888876 6789999999999999999999997654          23348899999999998754

>d1mo9a2 c.3.1.5 (A:193-313) NADH-dependent 2-ketopropyl coenzyme M oxidoreductase/carboxylase {Xanthobacter sp., py2 [TaxId: 35809]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: NADH-dependent 2-ketopropyl coenzyme M oxidoreductase/carboxylase
species: Xanthobacter sp., py2 [TaxId: 35809]

Probab=99.42  E-value=3.1e-13  Score=108.53  Aligned_cols=99  Identities=24%  Similarity=0.373  Sum_probs=78.4

Q ss_pred             CCcCcEEEecCHHHHHHHHHhhhcCCeEEEEcCChHHHHHHHHHHhCCCeEe------------------eeHHHHHHcC
Q 012165          183 GYLPGVHYIRDVADADALISSLEKAKKVVVVGGGYIGMEVAAAAVGWKLDTT------------------RYEQLYQQNG  244 (469)
Q Consensus       183 ~~~~~v~~~~~~~~~~~~~~~~~~~~~vvVvG~G~~g~e~A~~l~~~g~~v~------------------~~~~~l~~~g  244 (469)
                      .+.+|++...++.+.  +  ...++++++|||||++|+|+|..|+.+|.+++                  .+++.++++|
T Consensus         2 ~~~~gv~~~~~~~~~--l--~~~~~~~vvVvGgG~ig~E~A~~l~~~g~~vt~i~~~~~~l~~~d~~~~~~~~~~l~~~g   77 (121)
T d1mo9a2           2 VNAKGVFDHATLVEE--L--DYEPGSTVVVVGGSKTAVEYGCFFNATGRRTVMLVRTEPLKLIKDNETRAYVLDRMKEQG   77 (121)
T ss_dssp             TTSBTEEEHHHHHHH--C--CSCCCSEEEEECCSHHHHHHHHHHHHTTCEEEEECSSCTTTTCCSHHHHHHHHHHHHHTT
T ss_pred             CCCCCEEeHHHHHHH--H--hhCCCCEEEEECCCHHHHHHHHHHHhcchhheEeeccchhhcccccchhhhhhhhhhccc
Confidence            346788765433221  1  12357999999999999999999999999998                  5678899999


Q ss_pred             cEEEcCCeEEEEEeCCCCcEEEE---EcCCCCEEeCCEEEEccC
Q 012165          245 VKFVKGASIKNLEAGSDGRVAAV---KLEDGSTIDADTIVIGIG  285 (469)
Q Consensus       245 V~~~~~~~v~~i~~~~~~~v~~v---~~~~g~~i~~D~vi~a~G  285 (469)
                      |++++++.+++++.++++.+..+   ...+++++++|+||+|+|
T Consensus        78 I~v~~~~~v~~i~~~~~~~~~~~~~~~~~~~~~i~~D~Vi~a~G  121 (121)
T d1mo9a2          78 MEIISGSNVTRIEEDANGRVQAVVAMTPNGEMRIETDFVFLGLG  121 (121)
T ss_dssp             CEEESSCEEEEEEECTTSBEEEEEEEETTEEEEEECSCEEECCC
T ss_pred             cEEEcCCEEEEEEecCCceEEEEEEEeCCCCEEEEcCEEEEEEC
Confidence            99999999999998777765444   344567899999999998

>d1trba1 c.3.1.5 (A:1-118,A:245-316) Thioredoxin reductase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Thioredoxin reductase
species: Escherichia coli [TaxId: 562]

Probab=99.41  E-value=1.1e-12  Score=114.22  Aligned_cols=136  Identities=21%  Similarity=0.299  Sum_probs=97.1

Q ss_pred             cCCeEEEEcCChHHHHHHHHHHhCCCeEe----------------------------------eeHHHHHHcCcEEEcCC
Q 012165          206 KAKKVVVVGGGYIGMEVAAAAVGWKLDTT----------------------------------RYEQLYQQNGVKFVKGA  251 (469)
Q Consensus       206 ~~~~vvVvG~G~~g~e~A~~l~~~g~~v~----------------------------------~~~~~l~~~gV~~~~~~  251 (469)
                      +.++|+|||||++|++.|.++++.|.+++                                  .+...+.+.++++..+ 
T Consensus         4 k~~dVvIIGGGpaGl~AA~~~ar~g~~v~iie~~~~~g~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-   82 (190)
T d1trba1           4 KHSKLLILGSGPAGYTAAVYAARANLQPVLITGMEKGGQLTTTTEVENWPGDPNDLTGPLLMERMHEHATKFETEIIFD-   82 (190)
T ss_dssp             EEEEEEEECCSHHHHHHHHHHHTTTCCCEEECCSSTTGGGGGCSBCCCSTTCCSSCBHHHHHHHHHHHHHHTTCEEECC-
T ss_pred             CCCcEEEECCCHHHHHHHHHHHHcCCceEEEEeecccccccccchhhhhhccccccchHHHHHHHHHHHHhcCcEEecc-
Confidence            45789999999999999999999998876                                  2344566788888866 


Q ss_pred             eEEEEEeCCCCcEEEEEcCCCCEEeCCEEEEccCCccC-----CchhhhcCCcccCCCEEeCC-----CCCCCCCceEEe
Q 012165          252 SIKNLEAGSDGRVAAVKLEDGSTIDADTIVIGIGAKPT-----VSPFERVGLNSSVGGIQVDG-----QFRTRMPGIFAI  321 (469)
Q Consensus       252 ~v~~i~~~~~~~v~~v~~~~g~~i~~D~vi~a~G~~p~-----~~~~~~~gl~~~~g~i~Vd~-----~~~t~~~~Vfa~  321 (469)
                      .|+++...++.  ..+... ...+.++.+++++|..|.     ..+++. .++.++|+|.+|.     .++|++|+|||+
T Consensus        83 ~V~~~~~~~~~--~~v~~~-~~~~~~~~viva~G~~~~~~~~~~~~~~~-~~e~~~g~i~~~~~~~~~~~~T~v~gV~aa  158 (190)
T d1trba1          83 HINKVDLQNRP--FRLNGD-NGEYTCDALIIATGASARYHSPNTAIFEG-QLELENGYIKVQSGIHGNATQTSIPGVFAA  158 (190)
T ss_dssp             CEEEEECSSSS--EEEEES-SCEEEEEEEEECCCEEECCEEESCGGGTT-TSCEETTEECCCCSSSSCTTBCSSTTEEEC
T ss_pred             eeEEEecCCCc--EEEEEe-eeeEeeeeeeeecceeeeeecccceeecc-eEecCCcEEEEecCCcccccccccCeEEEe
Confidence            58887754332  234443 457999999999997654     333433 3555678899984     568999999999


Q ss_pred             ccccccCCccCCcccccchHHHHHHHHHHHHHHH
Q 012165          322 GDVAAFPLKMYDRTARVEHVDHARQSAQHCIKAL  355 (469)
Q Consensus       322 GD~a~~~~~~~~~~~~~~~~~~A~~~a~~~a~~i  355 (469)
                      |||+..+..         ..-.|..+|..+|.++
T Consensus       159 GDv~~~~~~---------q~i~Aag~G~~AA~~a  183 (190)
T d1trba1         159 GDVMDHIYR---------QAITSAGTGCMAALDA  183 (190)
T ss_dssp             GGGGCSSSC---------CHHHHHHHHHHHHHHH
T ss_pred             EEecCccee---------EEEEEeccHHHHHHHH
Confidence            999875432         2233555666666443

>d2gqfa1 c.3.1.8 (A:1-194,A:343-401) Hypothetical protein HI0933 {Haemophilus influenzae [TaxId: 727]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: HI0933 N-terminal domain-like
domain: Hypothetical protein HI0933
species: Haemophilus influenzae [TaxId: 727]

Probab=99.39  E-value=1.6e-12  Score=118.53  Aligned_cols=116  Identities=16%  Similarity=0.291  Sum_probs=78.0

Q ss_pred             eHHHHHHcCcEEEcCCeEEEEEeCCCC-cEEEEEcCCCCEEeCCEEEEccCCccCC---------chhhhcCCcc-----
Q 012165          236 YEQLYQQNGVKFVKGASIKNLEAGSDG-RVAAVKLEDGSTIDADTIVIGIGAKPTV---------SPFERVGLNS-----  300 (469)
Q Consensus       236 ~~~~l~~~gV~~~~~~~v~~i~~~~~~-~v~~v~~~~g~~i~~D~vi~a~G~~p~~---------~~~~~~gl~~-----  300 (469)
                      +.+.+++.||++++++.|++++..+++ .+..+...++.++.||.||+|+|-.+..         .+++.+++..     
T Consensus       115 L~~~~~~~gV~i~~~~~V~~i~~~~~~~~v~~~~~~~~~~~~a~~VIiAtGG~S~p~~G~~g~g~~~a~~~~~~i~~~~~  194 (253)
T d2gqfa1         115 LKSECDKYGAKILLRSEVSQVERIQNDEKVRFVLQVNSTQWQCKNLIVATGGLSMPGLGATPFGYQIAEQFGIPVIPPRA  194 (253)
T ss_dssp             HHHHHHHHTCEEECSCCEEEEEECCSCSSCCEEEEETTEEEEESEEEECCCCSSCGGGTCCSHHHHHHHHTTCCEEEEEE
T ss_pred             HHHHHHHcCCCeecCceEEEEEeecCCceeEEEEecCCEEEEeCEEEEcCCcccccccCCCchHHHHHHhcccccccccc
Confidence            445678889999999999999875544 2323455677899999999999966431         2456666653     


Q ss_pred             -cCCCEEe---C-CCCCC-CCCceEEeccccccCCccCCcccccchHHHHHHHHHHHHHHHh
Q 012165          301 -SVGGIQV---D-GQFRT-RMPGIFAIGDVAAFPLKMYDRTARVEHVDHARQSAQHCIKALL  356 (469)
Q Consensus       301 -~~g~i~V---d-~~~~t-~~~~Vfa~GD~a~~~~~~~~~~~~~~~~~~A~~~a~~~a~~i~  356 (469)
                       ..|++.+   | .+|++ .+|++|.+|.+........|.     ..+.|...|..+++.|.
T Consensus       195 ~~~ggv~~~~i~~~t~es~~~~gl~~~ge~ldv~g~~gg~-----n~~~a~~s~~~~~~~~~  251 (253)
T d2gqfa1         195 VTMGGVDTKVISSKTMESNQVSGLYFIGEVLDVTGWLGGY-----NFQWAWSSAYACALSIS  251 (253)
T ss_dssp             EEEEEECGGGBCTTTCBBSSSTTEEECGGGBSCEECTTTH-----HHHHHHHHHHHHHHHHH
T ss_pred             ccCCCCcccccCccchhhhcCCCcEEeeeEEEeeeecCCE-----ehhhhHhHHHHHHHHHh
Confidence             2345543   3 35666 689999999777643322221     33447778888877775

>d1aoga2 c.3.1.5 (A:170-286) Trypanothione reductase {Trypanosoma cruzi [TaxId: 5693]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Trypanothione reductase
species: Trypanosoma cruzi [TaxId: 5693]

Probab=99.38  E-value=5.4e-13  Score=106.22  Aligned_cols=87  Identities=25%  Similarity=0.465  Sum_probs=73.0

Q ss_pred             HHHHHHhhhcCCeEEEEcCChHHHHHHHHHHhCC---CeEe------------------eeHHHHHHcCcEEEcCCeEEE
Q 012165          197 ADALISSLEKAKKVVVVGGGYIGMEVAAAAVGWK---LDTT------------------RYEQLYQQNGVKFVKGASIKN  255 (469)
Q Consensus       197 ~~~~~~~~~~~~~vvVvG~G~~g~e~A~~l~~~g---~~v~------------------~~~~~l~~~gV~~~~~~~v~~  255 (469)
                      ++.+......+++++|||||++|+|+|..+..++   .+|+                  .+.+.++++||++++++++++
T Consensus        10 ~~~~~~l~~~p~~v~ivGgG~ig~E~A~~l~~l~~~~~~Vtli~~~~~iL~~~d~~~~~~l~~~l~~~GV~v~~~~~v~~   89 (117)
T d1aoga2          10 SNEAFYLPEPPRRVLTVGGGFISVEFAGIFNAYKPKDGQVTLCYRGEMILRGFDHTLREELTKQLTANGIQILTKENPAK   89 (117)
T ss_dssp             HHHHTTCSSCCSEEEEECSSHHHHHHHHHHHHHCCTTCEEEEEESSSSSSTTSCHHHHHHHHHHHHHTTCEEEESCCEEE
T ss_pred             HHHHhCchhcCCeEEEECCcHHHHHHHHHhhhcccCCcEEEEEeccchhhcccchHHHHHHHHHHHhcCcEEEcCCEEEE
Confidence            4445444567899999999999999998877665   4576                  678899999999999999999


Q ss_pred             EEeCCCCcEEEEEcCCCCEEeCCEEEEcc
Q 012165          256 LEAGSDGRVAAVKLEDGSTIDADTIVIGI  284 (469)
Q Consensus       256 i~~~~~~~v~~v~~~~g~~i~~D~vi~a~  284 (469)
                      ++..+++.+ .+.++||++++||.||+|+
T Consensus        90 ie~~~~~~~-~v~~~~G~~i~~D~Vi~AI  117 (117)
T d1aoga2          90 VELNADGSK-SVTFESGKKMDFDLVMMAI  117 (117)
T ss_dssp             EEECTTSCE-EEEETTSCEEEESEEEECS
T ss_pred             EEEcCCCeE-EEEECCCcEEEeCEEEEeC
Confidence            987666665 5899999999999999984

>d1ojta2 c.3.1.5 (A:276-400) Dihydrolipoamide dehydrogenase {Neisseria meningitidis [TaxId: 487]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Dihydrolipoamide dehydrogenase
species: Neisseria meningitidis [TaxId: 487]

Probab=99.38  E-value=2.1e-13  Score=109.63  Aligned_cols=90  Identities=14%  Similarity=0.249  Sum_probs=74.9

Q ss_pred             HHHHHHhhhcCCeEEEEcCChHHHHHHHHHHhCCCeEe------------------eeHHHHHHcCcEEEcCCeEEEEEe
Q 012165          197 ADALISSLEKAKKVVVVGGGYIGMEVAAAAVGWKLDTT------------------RYEQLYQQNGVKFVKGASIKNLEA  258 (469)
Q Consensus       197 ~~~~~~~~~~~~~vvVvG~G~~g~e~A~~l~~~g~~v~------------------~~~~~l~~~gV~~~~~~~v~~i~~  258 (469)
                      ++.+.+....+++++|||+|++|+|+|..++++|.+++                  .+++.++++||++++++.+++++.
T Consensus        16 s~~~l~l~~~p~~vvIiGgG~IG~E~A~~~~~~G~~Vtive~~~~il~~~d~~~~~~l~~~l~~~gv~~~~~~~v~~v~~   95 (125)
T d1ojta2          16 SSGALALKEVPGKLLIIGGGIIGLEMGTVYSTLGSRLDVVEMMDGLMQGADRDLVKVWQKQNEYRFDNIMVNTKTVAVEP   95 (125)
T ss_dssp             HHHHTTCCCCCSEEEEESCSHHHHHHHHHHHHHTCEEEEECSSSSSSTTSCHHHHHHHHHHHGGGEEEEECSCEEEEEEE
T ss_pred             HHHhhCccccCCeEEEECCCHHHHHHHHHhhcCCCEEEEEEeeccccccchhhHHHHHHHHHHHcCcccccCcEEEEEEE
Confidence            45555555678999999999999999999999999998                  678889999999999999999997


Q ss_pred             CCCCcEEEEEcCCC--CEEeCCEEEEccCC
Q 012165          259 GSDGRVAAVKLEDG--STIDADTIVIGIGA  286 (469)
Q Consensus       259 ~~~~~v~~v~~~~g--~~i~~D~vi~a~G~  286 (469)
                      .+++....+...+|  +++++|.|++|+|+
T Consensus        96 ~~~g~~v~~~~~~g~~~~i~~D~vl~A~GR  125 (125)
T d1ojta2          96 KEDGVYVTFEGANAPKEPQRYDAVLVAAGR  125 (125)
T ss_dssp             ETTEEEEEEESSSCCSSCEEESCEEECCCE
T ss_pred             cCCcEEEEEEeCCCCeEEEEcCEEEEecCC
Confidence            66654434444544  47999999999995

>d3lada2 c.3.1.5 (A:159-277) Dihydrolipoamide dehydrogenase {Azotobacter vinelandii [TaxId: 354]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Dihydrolipoamide dehydrogenase
species: Azotobacter vinelandii [TaxId: 354]

Probab=99.37  E-value=9.2e-13  Score=105.08  Aligned_cols=87  Identities=21%  Similarity=0.389  Sum_probs=72.8

Q ss_pred             HHHHHHhhhcCCeEEEEcCChHHHHHHHHHHhCCCeEe------------------eeHHHHHHcCcEEEcCCeEEEEEe
Q 012165          197 ADALISSLEKAKKVVVVGGGYIGMEVAAAAVGWKLDTT------------------RYEQLYQQNGVKFVKGASIKNLEA  258 (469)
Q Consensus       197 ~~~~~~~~~~~~~vvVvG~G~~g~e~A~~l~~~g~~v~------------------~~~~~l~~~gV~~~~~~~v~~i~~  258 (469)
                      ++.+.+....+++++|||+|++|+|+|..|+++|.+|+                  .+++.+++.||++++++++++++.
T Consensus        12 s~~~l~l~~~p~~i~IiG~G~ig~E~A~~l~~~G~~Vtiv~~~~~ll~~~d~ei~~~l~~~l~~~Gv~i~~~~~v~~i~~   91 (119)
T d3lada2          12 STGALDFQNVPGKLGVIGAGVIGLELGSVWARLGAEVTVLEAMDKFLPAVDEQVAKEAQKILTKQGLKILLGARVTGTEV   91 (119)
T ss_dssp             HHHHTSCSSCCSEEEEECCSHHHHHHHHHHHHTTCEEEEEESSSSSSTTSCHHHHHHHHHHHHHTTEEEEETCEEEEEEE
T ss_pred             hhHhhCcccCCCeEEEECCChHHHHHHHHHHHcCCceEEEEeecccCCcccchhHHHHHHHHHhcCceeecCcEEEEEEE
Confidence            45555555678999999999999999999999999998                  678999999999999999999997


Q ss_pred             CCCCcEEEEEcCCC---CEEeCCEEEEccC
Q 012165          259 GSDGRVAAVKLEDG---STIDADTIVIGIG  285 (469)
Q Consensus       259 ~~~~~v~~v~~~~g---~~i~~D~vi~a~G  285 (469)
                      .+++.  .+++.++   +++.||.|++|+|
T Consensus        92 ~~~~v--~v~~~~~~~~~~~~~D~vlvAvG  119 (119)
T d3lada2          92 KNKQV--TVKFVDAEGEKSQAFDKLIVAVG  119 (119)
T ss_dssp             CSSCE--EEEEESSSEEEEEEESEEEECSC
T ss_pred             eCCEE--EEEEEECCCCEEEECCEEEEeeC
Confidence            65553  3444433   5799999999998

>d1v59a2 c.3.1.5 (A:161-282) Dihydrolipoamide dehydrogenase {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Dihydrolipoamide dehydrogenase
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=99.37  E-value=1.2e-12  Score=104.74  Aligned_cols=87  Identities=20%  Similarity=0.424  Sum_probs=73.5

Q ss_pred             HHHHHHhhhcCCeEEEEcCChHHHHHHHHHHhCCCeEe------------------eeHHHHHHcCcEEEcCCeEEEEEe
Q 012165          197 ADALISSLEKAKKVVVVGGGYIGMEVAAAAVGWKLDTT------------------RYEQLYQQNGVKFVKGASIKNLEA  258 (469)
Q Consensus       197 ~~~~~~~~~~~~~vvVvG~G~~g~e~A~~l~~~g~~v~------------------~~~~~l~~~gV~~~~~~~v~~i~~  258 (469)
                      ++.+.+....+++++|||+|++|+|+|..|+++|.+|+                  .+++.++++||++++++++++++.
T Consensus        13 s~~~~~l~~~p~~~vIiG~G~ig~E~A~~l~~lG~~Vtii~~~~~~l~~~d~ei~~~l~~~l~~~GV~i~~~~~v~~v~~   92 (122)
T d1v59a2          13 STGALSLKEIPKRLTIIGGGIIGLEMGSVYSRLGSKVTVVEFQPQIGASMDGEVAKATQKFLKKQGLDFKLSTKVISAKR   92 (122)
T ss_dssp             HHHHTTCSSCCSEEEEECCSHHHHHHHHHHHHTTCEEEEECSSSSSSSSSCHHHHHHHHHHHHHTTCEEECSEEEEEEEE
T ss_pred             hHHhhCcccCCCeEEEECCCchHHHHHHHHHhhCcceeEEEeccccchhhhhhhHHHHHHHHHhccceEEeCCEEEEEEE
Confidence            44444544578999999999999999999999999998                  678889999999999999999998


Q ss_pred             CCCCcEEEEEcCCC-----CEEeCCEEEEc
Q 012165          259 GSDGRVAAVKLEDG-----STIDADTIVIG  283 (469)
Q Consensus       259 ~~~~~v~~v~~~~g-----~~i~~D~vi~a  283 (469)
                      .+++....+.+.++     +++++|.|++|
T Consensus        93 ~~~~~~v~~~~~~~~~~~~~~ie~D~vlvA  122 (122)
T d1v59a2          93 NDDKNVVEIVVEDTKTNKQENLEAEVLLVA  122 (122)
T ss_dssp             ETTTTEEEEEEEETTTTEEEEEEESEEEEC
T ss_pred             eCCCcEEEEEEEeCCCCCeEEEEeCEEEEC
Confidence            77776666666554     47999999986

>d1xhca1 c.3.1.5 (A:1-103,A:226-289) NADH oxidase /nitrite reductase {Pyrococcus furiosus [TaxId: 2261]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: NADH oxidase /nitrite reductase
species: Pyrococcus furiosus [TaxId: 2261]

Probab=99.34  E-value=9.2e-13  Score=112.06  Aligned_cols=105  Identities=26%  Similarity=0.447  Sum_probs=80.7

Q ss_pred             cEEEEcCcHHHHHHHHHHHHcCCCCCcEEEEcCCCCCCCCCCCCcccccCCCCCCCCCCCCCccccCCCCCCCCHhHHHH
Q 012165           53 EFVIVGGGNAAGYAARTFVEHGMADGRLCIVSKEAYAPYERPALTKGYLFPLDKKPARLPGFHTCVGSGGERQTPEWYKE  132 (469)
Q Consensus        53 ~vvIIGgG~AGl~aA~~L~~~g~~~~~V~vie~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  132 (469)
                      +|||||||++|+.+|..|++ +.   +|||+++++.+.|.++.+++. +..... ...+           .....+++.+
T Consensus         2 rVvIIGgG~~G~e~A~~l~~-~~---~Vtvv~~~~~~~~~~~~~~~~-~~~~~~-~~~~-----------~~~~~~~~~~   64 (167)
T d1xhca1           2 KVVIVGNGPGGFELAKQLSQ-TY---EVTVIDKEPVPYYSKPMLSHY-IAGFIP-RNRL-----------FPYSLDWYRK   64 (167)
T ss_dssp             EEEEECCSHHHHHHHHHHTT-TS---EEEEECSSSSCCCCSTTHHHH-HTTSSC-GGGG-----------CSSCHHHHHH
T ss_pred             eEEEECCcHHHHHHHHHHHc-CC---CEEEEeccccccccccchhhh-hhhhhh-hhhh-----------hHHHHHHHHh
Confidence            79999999999999999975 43   799999999888887766653 222111 1111           2356778899


Q ss_pred             CCcEEEeCCcEEEEeCCCcEEEeCCCeEEEeccEEeccCCCCC
Q 012165          133 KGIEMIYQDPVTSIDIEKQTLITNSGKLLKYGSLIVATGCTAS  175 (469)
Q Consensus       133 ~~i~~~~~~~v~~id~~~~~v~~~~g~~~~yd~lVlAtG~~~~  175 (469)
                      .+++++.++.+..++...+.+.. ++.+++||+|++|+|..|.
T Consensus        65 ~~v~~~~~~~v~~i~~~~~~~~~-~~~~i~~D~li~a~G~~~~  106 (167)
T d1xhca1          65 RGIEIRLAEEAKLIDRGRKVVIT-EKGEVPYDTLVLATGAPNV  106 (167)
T ss_dssp             HTEEEECSCCEEEEETTTTEEEE-SSCEEECSEEEECCCEECC
T ss_pred             ccceeeeeccccccccccccccc-cccccccceeEEEEEecCC
Confidence            99999999999999988776655 5556999999999998764

>d1q1ra3 d.87.1.1 (A:320-422) Putidaredoxin reductase {Pseudomonas putida [TaxId: 303]}

class: Alpha and beta proteins (a+b)
fold: CO dehydrogenase flavoprotein C-domain-like
superfamily: FAD/NAD-linked reductases, dimerisation (C-terminal) domain
family: FAD/NAD-linked reductases, dimerisation (C-terminal) domain
domain: Putidaredoxin reductase
species: Pseudomonas putida [TaxId: 303]

Probab=99.32  E-value=6.6e-12  Score=96.49  Aligned_cols=91  Identities=21%  Similarity=0.389  Sum_probs=76.2

Q ss_pred             CCCCCCceeeecccccCCCcceeeEEeecCCC--cEEEEccCC-CcEEEEEEeCCEEEEEEeecCChHHhHHHHHHHhCC
Q 012165          362 TYDYLPYFYSRVFEYEGSPRKVWWQFFGDNVG--ETIEIGNFD-PKIATFWIDSGKLKGVLVESGSPEEFQLLPTLARSQ  438 (469)
Q Consensus       362 ~~~~~p~~~~~~~~~~g~~~~~~~~~~G~~~~--~~~~~~~~~-~~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~  438 (469)
                      ++..+|||||+||+..       +|++|...+  +++.+|+.+ .+|..||+++|+|+|++. +|.++++..+++||+.+
T Consensus         3 ~~~~vP~FWSdQ~d~~-------lQ~~G~~~~~d~~v~rg~~~~~~f~~~y~~~~~lvav~~-vn~~~~~~~~r~li~~~   74 (103)
T d1q1ra3           3 RDEAAPWFWSDQYEIG-------LKMVGLSEGYDRIIVRGSLAQPDFSVFYLQGDRVLAVDT-VNRPVEFNQSKQIITDR   74 (103)
T ss_dssp             CCCCCCEEEEEETTEE-------EEEEECCTTCSEEEEEEETTTTEEEEEEEETTEEEEEEE-ESCHHHHHHHHHHHHTT
T ss_pred             CCCCCCcEeeecCCCe-------eEEEECCCCCceEEEecCCCCCeEEEEEEeCCeEEEEEE-eCCHHHHHHHHHHHHCC
Confidence            5678999999999975       999998654  567788776 579999999999999995 89999999999999999


Q ss_pred             CCCChhhhcCCC-cHHHHHHHHH
Q 012165          439 PFVDKAKLQQAS-SVEEALEIAR  460 (469)
Q Consensus       439 ~~~~~~~~~~~~-~~~~~~~~~~  460 (469)
                      ..++++.|.|+. .+.+.++.+.
T Consensus        75 ~~~~~~~L~D~~~~Lk~Ll~~~~   97 (103)
T d1q1ra3          75 LPVEPNLLGDESVPLKEIIAAAK   97 (103)
T ss_dssp             CCCCHHHHTCTTSCHHHHHHHHH
T ss_pred             CCcCHHHhcCCCCCHHHHHHhhh
Confidence            999999998775 5555555443

>d1aoga1 c.3.1.5 (A:3-169,A:287-357) Trypanothione reductase {Trypanosoma cruzi [TaxId: 5693]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Trypanothione reductase
species: Trypanosoma cruzi [TaxId: 5693]

Probab=99.31  E-value=3e-12  Score=115.26  Aligned_cols=78  Identities=24%  Similarity=0.428  Sum_probs=61.5

Q ss_pred             CEEeCCEEEEccCCccCC--------ch--hhhcCCcccCCCEEeCCCCCCCCCceEEeccccccCCccCCcccccchHH
Q 012165          273 STIDADTIVIGIGAKPTV--------SP--FERVGLNSSVGGIQVDGQFRTRMPGIFAIGDVAAFPLKMYDRTARVEHVD  342 (469)
Q Consensus       273 ~~i~~D~vi~a~G~~p~~--------~~--~~~~gl~~~~g~i~Vd~~~~t~~~~Vfa~GD~a~~~~~~~~~~~~~~~~~  342 (469)
                      +.+++|.++++++.+|..        ..  +...++..++|+|.||++|||+.|+|||+|||...+.          ...
T Consensus       148 ~~~~a~~v~i~~~~~~~~~~~~~~~~~~l~~~~~gv~~~~G~I~vde~~~T~~~~iyAvGDv~~~~~----------l~~  217 (238)
T d1aoga1         148 ERLETEHILLASGSWPHMPNGRSPRTKDLQLQNAGVMIKNGGVQVDEYSRTNVSNIYAIGDVTNRVM----------LTP  217 (238)
T ss_dssp             EEEEBSCEEECCCEEECCCCCEEECCGGGCGGGTTCCEETTEECCCTTCBCSSTTEEECGGGGTSCC----------CHH
T ss_pred             ccccccceeeecccccccccccccceeeecccccEEEEcCCeEEecCCeeeccCCEEEEEEecCCcc----------chh
Confidence            357788888877666543        22  3557888888999999999999999999999997653          233


Q ss_pred             HHHHHHHHHHHHHhcCCC
Q 012165          343 HARQSAQHCIKALLSAQT  360 (469)
Q Consensus       343 ~A~~~a~~~a~~i~~~~~  360 (469)
                      .|..+|+.+|++|+++.+
T Consensus       218 ~A~~eg~~aa~~i~g~~~  235 (238)
T d1aoga1         218 VAINEAAALVDTVFGTTP  235 (238)
T ss_dssp             HHHHHHHHHHHHHHSSSC
T ss_pred             hHHHHHHHHHHHHcCCCC
Confidence            499999999999998654

>d1fcda1 c.3.1.5 (A:1-114,A:256-327) Flavocytochrome c sulfide dehydrogenase, FCSD, flavin-binding subunit {Purple phototrophic bacterium (Chromatium vinosum) [TaxId: 1049]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Flavocytochrome c sulfide dehydrogenase, FCSD, flavin-binding subunit
species: Purple phototrophic bacterium (Chromatium vinosum) [TaxId: 1049]

Probab=99.31  E-value=1.5e-12  Score=112.16  Aligned_cols=108  Identities=20%  Similarity=0.235  Sum_probs=79.3

Q ss_pred             CCcEEEEcCcHHHHHHHHHHHHcCCCCCcEEEEcCCCCCCCCCCCCcccccCCCCCCCCCCCCCccccCCCCCCCCHhHH
Q 012165           51 NREFVIVGGGNAAGYAARTFVEHGMADGRLCIVSKEAYAPYERPALTKGYLFPLDKKPARLPGFHTCVGSGGERQTPEWY  130 (469)
Q Consensus        51 ~~~vvIIGgG~AGl~aA~~L~~~g~~~~~V~vie~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  130 (469)
                      .++|||||||++|+.+|.+|++.+. +.+||++|+++.+.+  +.++........... .            .......+
T Consensus         2 gkrivIvGgG~~G~e~A~~l~~~~~-~~~Vtlie~~~~~~~--~~~~~~~~~~~~~~~-~------------~~~~~~~~   65 (186)
T d1fcda1           2 GRKVVVVGGGTGGATAAKYIKLADP-SIEVTLIEPNTDYYT--CYLSNEVIGGDRKLE-S------------IKHGYDGL   65 (186)
T ss_dssp             CCEEEEECCSHHHHHHHHHHHHHCT-TSEEEEECSCSCEEC--STTHHHHHHTSSCGG-G------------GEECSHHH
T ss_pred             CCcEEEECccHHHHHHHHHHHHcCC-CCcEEEEECCCcccc--ccccccccchhhhhh-h------------hhhhhhhc
Confidence            3799999999999999999999985 789999999876422  222221111111111 0            11233456


Q ss_pred             HHCCcEEEeCCcEEEEeCCCcEEEeCCCeEEEeccEEeccCCCCC
Q 012165          131 KEKGIEMIYQDPVTSIDIEKQTLITNSGKLLKYGSLIVATGCTAS  175 (469)
Q Consensus       131 ~~~~i~~~~~~~v~~id~~~~~v~~~~g~~~~yd~lVlAtG~~~~  175 (469)
                      ...++.+..+ ++..++...+.+.+.++++++||+||+|||..+.
T Consensus        66 ~~~~v~~~~~-~~~~~~~~~~~~~~~~~~~i~~D~li~atG~~~~  109 (186)
T d1fcda1          66 RAHGIQVVHD-SATGIDPDKKLVKTAGGAEFGYDRCVVAPGIELI  109 (186)
T ss_dssp             HTTTEEEECC-CEEECCTTTTEEEETTSCEEECSEEEECCCEEEC
T ss_pred             cccceeEeee-eeEeeeeccceeecccceeeccceEEEEeccccc
Confidence            6778888774 7888888889999999999999999999998876

>d1djqa2 c.3.1.1 (A:490-645) Trimethylamine dehydrogenase, C-terminal domain {Methylophilus methylotrophus, w3a1 [TaxId: 17]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: C-terminal domain of adrenodoxin reductase-like
domain: Trimethylamine dehydrogenase, C-terminal domain
species: Methylophilus methylotrophus, w3a1 [TaxId: 17]

Probab=99.29  E-value=2.4e-12  Score=108.20  Aligned_cols=132  Identities=11%  Similarity=0.047  Sum_probs=99.0

Q ss_pred             eccCCCCCcCCCCCCCCcCcEEEecCHHHHHHHHHhhhcCCeEEEE--cCChHHHHHHHHHHhCCCeEe-----------
Q 012165          168 VATGCTASRFPEKIGGYLPGVHYIRDVADADALISSLEKAKKVVVV--GGGYIGMEVAAAAVGWKLDTT-----------  234 (469)
Q Consensus       168 lAtG~~~~~~~~~~g~~~~~v~~~~~~~~~~~~~~~~~~~~~vvVv--G~G~~g~e~A~~l~~~g~~v~-----------  234 (469)
                      -|||+.|..++++||.+.++.+.+ +.++..  ......++.++|+  |||++|+|+|..|+++|.+|+           
T Consensus         3 ~atG~~~~~~~pipG~~~~~~~v~-t~~d~l--~~~~~~~~~vvi~d~ggg~ig~e~A~~la~~G~~Vtlv~~~~~~~~~   79 (156)
T d1djqa2           3 NTDGTNCLTHDPIPGADASLPDQL-TPEQVM--DGKKKIGKRVVILNADTYFMAPSLAEKLATAGHEVTIVSGVHLANYM   79 (156)
T ss_dssp             CSSCCCTTTSSCCTTCCTTSTTEE-CHHHHH--HTCSCCCSEEEEEECCCSSHHHHHHHHHHHTTCEEEEEESSCTTTHH
T ss_pred             cCCCCCCCCCCCCCCccCCCCEEE-CHHHHh--cCccccCCceEEEecCCChHHHHHHHHHHHcCCeEEEEecCCccccc
Confidence            389999876557788776654444 334332  2223455666666  999999999999999999998           


Q ss_pred             -------eeHHHHHHcCcEEEcCCeEEEEEeCCCCcEEEEEcCCCCEEeCCEEEEccCCccCCchhhhcCCcccCCCEEe
Q 012165          235 -------RYEQLYQQNGVKFVKGASIKNLEAGSDGRVAAVKLEDGSTIDADTIVIGIGAKPTVSPFERVGLNSSVGGIQV  307 (469)
Q Consensus       235 -------~~~~~l~~~gV~~~~~~~v~~i~~~~~~~v~~v~~~~g~~i~~D~vi~a~G~~p~~~~~~~~gl~~~~g~i~V  307 (469)
                             .+.+.|++.||++++++.+.+++.+      .+.+.+......+.++.++|..|+....++.+++.| ..+.+
T Consensus        80 ~~~~~~~~~~~~l~~~GV~i~~~~~v~~i~~~------~v~l~~~~~~~~~~v~~~~g~~~~~~~~~~~~le~D-~vilv  152 (156)
T d1djqa2          80 HFTLEYPNMMRRLHELHVEELGDHFCSRIEPG------RMEIYNIWGDGSKRTYRGPGVSPRDANTSHRWIEFD-SLVLV  152 (156)
T ss_dssp             HHTTCHHHHHHHHHHTTCEEEETEEEEEEETT------EEEEEETTCSCSCCCCCCTTSCSSCCCCCCEEEECS-EEEEE
T ss_pred             cchhHHHHHHHHHhhccceEEeccEEEEecCc------ceEEEeeeccccceeeeeeEEEecccCCccCcEecc-eEEEE
Confidence                   5678889999999999999999843      345555555668889999999999888888877776 45555


Q ss_pred             CC
Q 012165          308 DG  309 (469)
Q Consensus       308 d~  309 (469)
                      +.
T Consensus       153 tg  154 (156)
T d1djqa2         153 TG  154 (156)
T ss_dssp             SC
T ss_pred             ec
Confidence            53

>d1dxla2 c.3.1.5 (A:153-275) Dihydrolipoamide dehydrogenase {Garden pea (Pisum sativum) [TaxId: 3888]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Dihydrolipoamide dehydrogenase
species: Garden pea (Pisum sativum) [TaxId: 3888]

Probab=99.29  E-value=3e-12  Score=102.65  Aligned_cols=88  Identities=25%  Similarity=0.477  Sum_probs=73.0

Q ss_pred             HHHHHHhhhcCCeEEEEcCChHHHHHHHHHHhCCCeEe------------------eeHHHHHHcCcEEEcCCeEEEEEe
Q 012165          197 ADALISSLEKAKKVVVVGGGYIGMEVAAAAVGWKLDTT------------------RYEQLYQQNGVKFVKGASIKNLEA  258 (469)
Q Consensus       197 ~~~~~~~~~~~~~vvVvG~G~~g~e~A~~l~~~g~~v~------------------~~~~~l~~~gV~~~~~~~v~~i~~  258 (469)
                      ++.+......+++++|||+|++|+|+|..+.++|.+|+                  .+.+.|++.||++++++++++++.
T Consensus        15 s~~~l~l~~~p~~~viiG~G~iglE~A~~~~~~G~~Vtvi~~~~~~l~~~d~~~~~~l~~~l~~~GI~i~~~~~v~~i~~   94 (123)
T d1dxla2          15 STGALALSEIPKKLVVIGAGYIGLEMGSVWGRIGSEVTVVEFASEIVPTMDAEIRKQFQRSLEKQGMKFKLKTKVVGVDT   94 (123)
T ss_dssp             HHHHTTCSSCCSEEEESCCSHHHHHHHHHHHHHTCEEEEECSSSSSSTTSCHHHHHHHHHHHHHSSCCEECSEEEEEEEC
T ss_pred             HHHhhCccccCCeEEEEccchHHHHHHHHHHhcCCeEEEEEEccccCchhhhcchhhhhhhhhcccceEEcCCceEEEEE
Confidence            45555555678999999999999999999999999998                  668899999999999999999997


Q ss_pred             CCCCcEEEEEcCCC---CEEeCCEEEEcc
Q 012165          259 GSDGRVAAVKLEDG---STIDADTIVIGI  284 (469)
Q Consensus       259 ~~~~~v~~v~~~~g---~~i~~D~vi~a~  284 (469)
                      .+++....+...++   +.++||.|++|.
T Consensus        95 ~~~~~~v~~~~~~~g~~~~i~~D~vLvAA  123 (123)
T d1dxla2          95 SGDGVKLTVEPSAGGEQTIIEADVVLVSA  123 (123)
T ss_dssp             SSSSEEEEEEESSSCCCEEEEESEEECCC
T ss_pred             ccCeEEEEEEECCCCeEEEEEcCEEEEcC
Confidence            66665545555443   458999999873

>d1d7ya3 d.87.1.1 (A:309-405) NADH-dependent ferredoxin reductase, BphA4 {Pseudomonas sp., KKS102 [TaxId: 306]}

class: Alpha and beta proteins (a+b)
fold: CO dehydrogenase flavoprotein C-domain-like
superfamily: FAD/NAD-linked reductases, dimerisation (C-terminal) domain
family: FAD/NAD-linked reductases, dimerisation (C-terminal) domain
domain: NADH-dependent ferredoxin reductase, BphA4
species: Pseudomonas sp., KKS102 [TaxId: 306]

Probab=99.29  E-value=1.4e-11  Score=93.69  Aligned_cols=88  Identities=23%  Similarity=0.331  Sum_probs=72.6

Q ss_pred             CCCCCCCceeeecccccCCCcceeeEEeecCCC--cEEE-EccCC-CcEEEEEEeCCEEEEEEeecCChHHhHHHHHHHh
Q 012165          361 HTYDYLPYFYSRVFEYEGSPRKVWWQFFGDNVG--ETIE-IGNFD-PKIATFWIDSGKLKGVLVESGSPEEFQLLPTLAR  436 (469)
Q Consensus       361 ~~~~~~p~~~~~~~~~~g~~~~~~~~~~G~~~~--~~~~-~~~~~-~~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~  436 (469)
                      .+|..+|||||+||+..       +|++|....  +.+. .++.+ .+|..+|+++|+|+|++. +|.++++..+++|++
T Consensus         3 ~~y~~vP~FWSdQ~d~~-------iq~~G~~~~~~~~v~~~~~~~~~~f~~~y~~~g~lvgv~~-vn~~~~~~~~rrli~   74 (97)
T d1d7ya3           3 PGYAELPWYWSDQGALR-------IQVAGLASGDEEIVRGEVSLDAPKFTLIELQKGRIVGATC-VNNARDFAPLRRLLA   74 (97)
T ss_dssp             CCCCCCCEEEEEETTEE-------EEEEECSCCSEEEEEEECCSSSCEEEEEEEETTEEEEEEE-ESCHHHHHHHHHHHH
T ss_pred             CCCCCCCcEEeccCCCe-------eEEEecCCCCCEEEEeccCCCCCeEEEEEEeCCEEEEEEE-eCCHHHHHHHHHHHH
Confidence            57999999999999965       999998765  2344 34444 579999999999999995 899999999999999


Q ss_pred             CCCCCChhhhcCCCcHHHHH
Q 012165          437 SQPFVDKAKLQQASSVEEAL  456 (469)
Q Consensus       437 ~~~~~~~~~~~~~~~~~~~~  456 (469)
                      .+..++++.|.|+..-...|
T Consensus        75 ~~~~~~~~~LaD~~~~Lk~L   94 (97)
T d1d7ya3          75 VGAKPDRAALADPATDLRKL   94 (97)
T ss_dssp             TTCCCCHHHHHSSCCHHHHH
T ss_pred             CCCCCCHHHhcCCCCCHHHH
Confidence            99999999998876654433

>d1fl2a1 c.3.1.5 (A:212-325,A:452-521) Alkyl hydroperoxide reductase subunit F (AhpF), C-terminal domains {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Alkyl hydroperoxide reductase subunit F (AhpF), C-terminal domains
species: Escherichia coli [TaxId: 562]

Probab=99.28  E-value=3.3e-11  Score=103.88  Aligned_cols=144  Identities=19%  Similarity=0.329  Sum_probs=102.8

Q ss_pred             eEEEEcCChHHHHHHHHHHhCCCeEe--------------------------------eeHHHHHHcCcEEEcCCeEEEE
Q 012165          209 KVVVVGGGYIGMEVAAAAVGWKLDTT--------------------------------RYEQLYQQNGVKFVKGASIKNL  256 (469)
Q Consensus       209 ~vvVvG~G~~g~e~A~~l~~~g~~v~--------------------------------~~~~~l~~~gV~~~~~~~v~~i  256 (469)
                      .|+|||||++|+++|.+++++|.++.                                .+....++.+++......+..+
T Consensus         3 DViIIGgGpaGl~AAi~aar~G~~v~iie~~~gg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   82 (184)
T d1fl2a1           3 DVLIVGSGPAGAAAAIYSARKGIRTGLMGERFGGQILDTVDIENYISVPKTEGQKLAGALKVHVDEYDVDVIDSQSASKL   82 (184)
T ss_dssp             EEEEECCSHHHHHHHHHHHTTTCCEEEECSSTTGGGGGCCEECCBTTBSSEEHHHHHHHHHHHHHTSCEEEECSCCEEEE
T ss_pred             cEEEECcCHHHHHHHHHHHHcCCeEEEEEEecCCcccccccceeccccchhhhHHHHHHHHHHhhheeceeeccceeeee
Confidence            58999999999999999999998876                                2234455677888888777777


Q ss_pred             EeCCCC-cEEEEEcCCCCEEeCCEEEEccCCccCCchhhhcCCccc-CCCEEeCCCCCCCCCceEEeccccccCCccCCc
Q 012165          257 EAGSDG-RVAAVKLEDGSTIDADTIVIGIGAKPTVSPFERVGLNSS-VGGIQVDGQFRTRMPGIFAIGDVAAFPLKMYDR  334 (469)
Q Consensus       257 ~~~~~~-~v~~v~~~~g~~i~~D~vi~a~G~~p~~~~~~~~gl~~~-~g~i~Vd~~~~t~~~~Vfa~GD~a~~~~~~~~~  334 (469)
                      ...... ........+++.+.++.++.++|..++.......++... .|.|.||..++|+.|+||++|||...+...   
T Consensus        83 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~g~i~v~~~~~t~~~gv~a~gd~~~~~~~~---  159 (184)
T d1fl2a1          83 IPAAVEGGLHQIETASGAVLKARSIIVATGAKLPNTNWLEGAVERNRMGEIIIDAKCETNVKGVFAAGDCTTVPYKQ---  159 (184)
T ss_dssp             ECCSSTTCCEEEEETTSCEEEEEEEEECCCEEEESCGGGTTTSCBCTTSCBCCCTTCBCSSTTEEECSTTBSCSSCC---
T ss_pred             cccccccceeeeeeecceeeecccccccccccccccccccccccccccceeccCCceeeeCCCEEEEeeecCcccCC---
Confidence            643222 233445567778999999999998776665555555544 578999999999999999999999866431   


Q ss_pred             ccccchHHHHHHHHHHHHHHHhc
Q 012165          335 TARVEHVDHARQSAQHCIKALLS  357 (469)
Q Consensus       335 ~~~~~~~~~A~~~a~~~a~~i~~  357 (469)
                        .+.....+..+|..+++.|+.
T Consensus       160 --~vva~g~G~~aA~~~~~~l~~  180 (184)
T d1fl2a1         160 --IIIATGEGAKASLSAFDYLIR  180 (184)
T ss_dssp             --HHHHHHHHHHHHHHHHHHHHH
T ss_pred             --cEEEEECcHHHHHHHHHHHhh
Confidence              111223344455555555553

>d1ebda2 c.3.1.5 (A:155-271) Dihydrolipoamide dehydrogenase {Bacillus stearothermophilus [TaxId: 1422]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Dihydrolipoamide dehydrogenase
species: Bacillus stearothermophilus [TaxId: 1422]

Probab=99.28  E-value=3.6e-12  Score=101.44  Aligned_cols=87  Identities=32%  Similarity=0.497  Sum_probs=70.5

Q ss_pred             HHHHHHHhhhcCCeEEEEcCChHHHHHHHHHHhCCCeEe------------------eeHHHHHHcCcEEEcCCeEEEEE
Q 012165          196 DADALISSLEKAKKVVVVGGGYIGMEVAAAAVGWKLDTT------------------RYEQLYQQNGVKFVKGASIKNLE  257 (469)
Q Consensus       196 ~~~~~~~~~~~~~~vvVvG~G~~g~e~A~~l~~~g~~v~------------------~~~~~l~~~gV~~~~~~~v~~i~  257 (469)
                      +++.+......+++++|||||++|+|+|..+.++|.+|+                  .+.+.++++||++++++.+++++
T Consensus        11 ~s~~~l~~~~~p~~v~IiGgG~ig~E~A~~l~~~G~~Vtlve~~~~il~~~d~~~~~~l~~~l~~~GI~i~~~~~v~~i~   90 (117)
T d1ebda2          11 DSTGALNLGEVPKSLVVIGGGYIGIELGTAYANFGTKVTILEGAGEILSGFEKQMAAIIKKRLKKKGVEVVTNALAKGAE   90 (117)
T ss_dssp             CHHHHHTCSSCCSEEEEECCSHHHHHHHHHHHHTTCEEEEEESSSSSSTTSCHHHHHHHHHHHHHTTCEEEESEEEEEEE
T ss_pred             ChhHhhChhhcCCeEEEECCCccceeeeeeecccccEEEEEEecceecccccchhHHHHHHHHHhcCCEEEcCCEEEEEE
Confidence            355555656678999999999999999999999999998                  56888999999999999999998


Q ss_pred             eCCCCcEEEEEcCCC--CEEeCCEEEEc
Q 012165          258 AGSDGRVAAVKLEDG--STIDADTIVIG  283 (469)
Q Consensus       258 ~~~~~~v~~v~~~~g--~~i~~D~vi~a  283 (469)
                      ..+++.. -....+|  +++++|.||++
T Consensus        91 ~~~~~~~-v~~~~~g~~~~i~~D~Vlvs  117 (117)
T d1ebda2          91 EREDGVT-VTYEANGETKTIDADYVLVT  117 (117)
T ss_dssp             EETTEEE-EEEEETTEEEEEEESEEEEC
T ss_pred             EcCCEEE-EEEEeCCCEEEEEeEEEEEC
Confidence            7655432 2223444  56999999974

>d1lvla2 c.3.1.5 (A:151-265) Dihydrolipoamide dehydrogenase {Pseudomonas putida [TaxId: 303]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Dihydrolipoamide dehydrogenase
species: Pseudomonas putida [TaxId: 303]

Probab=99.27  E-value=3.3e-12  Score=101.26  Aligned_cols=85  Identities=24%  Similarity=0.430  Sum_probs=67.6

Q ss_pred             HHHHHhhhcCCeEEEEcCChHHHHHHHHHHhCCCeEe------------------eeHHHHHHcCcEEEcCCeEEEEEeC
Q 012165          198 DALISSLEKAKKVVVVGGGYIGMEVAAAAVGWKLDTT------------------RYEQLYQQNGVKFVKGASIKNLEAG  259 (469)
Q Consensus       198 ~~~~~~~~~~~~vvVvG~G~~g~e~A~~l~~~g~~v~------------------~~~~~l~~~gV~~~~~~~v~~i~~~  259 (469)
                      +.....-..+++++|||||++|+|+|..|+++|.+|+                  .+.+.++++||+++++++|++++  
T Consensus        12 ~~~l~~~~~p~~vvIiGgG~~G~E~A~~l~~~g~~Vtlve~~~~il~~~d~~~~~~l~~~l~~~gV~i~~~~~V~~i~--   89 (115)
T d1lvla2          12 TEALAPKALPQHLVVVGGGYIGLELGIAYRKLGAQVSVVEARERILPTYDSELTAPVAESLKKLGIALHLGHSVEGYE--   89 (115)
T ss_dssp             HHHTCCSSCCSEEEEECCSHHHHHHHHHHHHHTCEEEEECSSSSSSTTSCHHHHHHHHHHHHHHTCEEETTCEEEEEE--
T ss_pred             hHHhCcccCCCeEEEECCCHHHHHHHHHHhhcccceEEEeeeccccccccchhHHHHHHHHHhhcceEEcCcEEEEEc--
Confidence            3343434567999999999999999999999999998                  66788999999999999999997  


Q ss_pred             CCCcEEEEE-cCCCCEEeCCEEEEccC
Q 012165          260 SDGRVAAVK-LEDGSTIDADTIVIGIG  285 (469)
Q Consensus       260 ~~~~v~~v~-~~~g~~i~~D~vi~a~G  285 (469)
                       ++...... ..+++++++|.||+|+|
T Consensus        90 -~~~~~~~~~~~~~~~i~~D~vi~A~G  115 (115)
T d1lvla2          90 -NGCLLANDGKGGQLRLEADRVLVAVG  115 (115)
T ss_dssp             -TTEEEEECSSSCCCEECCSCEEECCC
T ss_pred             -CCeEEEEEcCCCeEEEEcCEEEEecC
Confidence             23322222 22335799999999998

>d1gesa1 c.3.1.5 (A:3-146,A:263-335) Glutathione reductase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Glutathione reductase
species: Escherichia coli [TaxId: 562]

Probab=99.27  E-value=1.4e-11  Score=109.38  Aligned_cols=134  Identities=25%  Similarity=0.365  Sum_probs=99.4

Q ss_pred             eEEEEcCChHHHHHHHHHHhCCCeEe------------------------------------------------------
Q 012165          209 KVVVVGGGYIGMEVAAAAVGWKLDTT------------------------------------------------------  234 (469)
Q Consensus       209 ~vvVvG~G~~g~e~A~~l~~~g~~v~------------------------------------------------------  234 (469)
                      .++|||+|+.|+++|..++++|.+|.                                                      
T Consensus         4 DvvVIG~G~aG~~aA~~a~~~G~kV~iiE~~~~GGtc~~~gc~p~k~l~~~a~~~~~~~~~~~~~g~~~~~~~~~~~~~~   83 (217)
T d1gesa1           4 DYIAIGGGSGGIASINRAAMYGQKCALIEAKELGGTCVNVGCVPKKVMWHAAQIREAIHMYGPDYGFDTTINKFNWETLI   83 (217)
T ss_dssp             EEEEECCSHHHHHHHHHHHTTTCCEEEEESSCTTHHHHHHSHHHHHHHHHHHHHHHHHHTTGGGGTEEEEEEEECHHHHH
T ss_pred             CEEEECCCHHHHHHHHHHHHCCCEEEEEeccCcCCeEecccccccccchhhHHHHHHHHhhhhhcCccCCcccccHHHHH
Confidence            58999999999999999999999876                                                      


Q ss_pred             ------------eeHHHHHHcCcEEEcCCeEEEEEeCCCCcEEEEEcCCCCEEeCCEEEEccCCccCCch--------hh
Q 012165          235 ------------RYEQLYQQNGVKFVKGASIKNLEAGSDGRVAAVKLEDGSTIDADTIVIGIGAKPTVSP--------FE  294 (469)
Q Consensus       235 ------------~~~~~l~~~gV~~~~~~~v~~i~~~~~~~v~~v~~~~g~~i~~D~vi~a~G~~p~~~~--------~~  294 (469)
                                  .++..+++.||++..........    .    ....+++.+.++.+++++|.+|..+.        ++
T Consensus        84 ~~~~~~v~~~~~~~~~~l~~~gV~v~~~~~~~~~~----~----~~~~~~~~~~~~~~iiatG~~p~ip~ip~~~~l~l~  155 (217)
T d1gesa1          84 ASRTAYIDRIHTSYENVLGKNNVDVIKGFARFVDA----K----TLEVNGETITADHILIATGGRPSHPREPANDNINLE  155 (217)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHTTCEEEESCCEEEET----T----EEEETTEEEEEEEEEECCCEEECCCEEESCTTSCHH
T ss_pred             HHHHHHHHHHHHHHHHHHhCCeEEEEeeeccccee----e----eecCCCceeeeeeeeeecCccccCCCCCCcCCcccc
Confidence                        12234566677777654322221    1    12346678999999999998876432        34


Q ss_pred             hcCCccc-CCCEEeCCCCCCCCCceEEeccccccCCccCCcccccchHHHHHHHHHHHHHHHhcCCC
Q 012165          295 RVGLNSS-VGGIQVDGQFRTRMPGIFAIGDVAAFPLKMYDRTARVEHVDHARQSAQHCIKALLSAQT  360 (469)
Q Consensus       295 ~~gl~~~-~g~i~Vd~~~~t~~~~Vfa~GD~a~~~~~~~~~~~~~~~~~~A~~~a~~~a~~i~~~~~  360 (469)
                      ..++..+ ++.+.+|+.++|+.|+||++||+.....          ..+.+..+|..++.++++..+
T Consensus       156 ~~gv~~~~~~~i~~d~~~~t~~~~i~~iG~g~~g~e----------la~~~~~~G~~v~~~~~~~~p  212 (217)
T d1gesa1         156 AAGVKTNEKGYIVVDKYQNTNIEGIYAVGDNTGAVE----------LTPVAVAAGRRLSERLFNNKP  212 (217)
T ss_dssp             HHTCCBCTTSCBCCCTTSBCSSTTEEECSGGGTSCC----------CHHHHHHHHHHHHHHHHTTCT
T ss_pred             cccEEEcCCccEeeCchhccCCCcEEEECCCccHHH----------HHHHHHHHHHHHHHHHhCCCC
Confidence            4566665 6779999999999999999999987532          344588899999999987554

>d3grsa2 c.3.1.5 (A:166-290) Glutathione reductase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Glutathione reductase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.25  E-value=1.2e-11  Score=99.47  Aligned_cols=89  Identities=25%  Similarity=0.374  Sum_probs=71.3

Q ss_pred             HHHHHHhhhcCCeEEEEcCChHHHHHHHHHHhCCCeEe------------------eeHHHHHHcCcEEEcCCeEEEEEe
Q 012165          197 ADALISSLEKAKKVVVVGGGYIGMEVAAAAVGWKLDTT------------------RYEQLYQQNGVKFVKGASIKNLEA  258 (469)
Q Consensus       197 ~~~~~~~~~~~~~vvVvG~G~~g~e~A~~l~~~g~~v~------------------~~~~~l~~~gV~~~~~~~v~~i~~  258 (469)
                      ++.+......+++++|||+|++|+|+|..|+++|.+|+                  .+.+.++++||++++++++++++.
T Consensus        12 s~~~~~l~~~pk~vvIvGgG~iG~E~A~~l~~~G~~Vtlv~~~~~~l~~~d~~~~~~~~~~l~~~Gv~i~~~~~v~~i~~   91 (125)
T d3grsa2          12 SDGFFQLEELPGRSVIVGAGYIAVEMAGILSALGSKTSLMIRHDKVLRSFDSMISTNCTEELENAGVEVLKFSQVKEVKK   91 (125)
T ss_dssp             HHHHTTCCSCCSEEEEECCSHHHHHHHHHHHHTTCEEEEECSSSSSCTTSCHHHHHHHHHHHHHTTCEEETTEEEEEEEE
T ss_pred             HHHHhChhhcCCEEEEEcCCccHHHHHHHHhcCCcEEEEEeeccccccchhhHHHHHHHHHHHHCCCEEEeCCEEEEEEE
Confidence            44444444567999999999999999999999999998                  667889999999999999999987


Q ss_pred             CCCCcE-EEEEcCCCC------EEeCCEEEEccC
Q 012165          259 GSDGRV-AAVKLEDGS------TIDADTIVIGIG  285 (469)
Q Consensus       259 ~~~~~v-~~v~~~~g~------~i~~D~vi~a~G  285 (469)
                      .+++.. ..+...+|+      .+++|.|++|+|
T Consensus        92 ~~~g~~v~~~~~~~g~~~~~~~~~~~D~vl~a~G  125 (125)
T d3grsa2          92 TLSGLEVSMVTAVPGRLPVMTMIPDVDCLLWAIG  125 (125)
T ss_dssp             ETTEEEEEEEECCTTSCCEEEEEEEESEEEECSC
T ss_pred             cCCeEEEEEEEccCCcCcCccccccCCEEEEEeC
Confidence            655532 223334442      578999999998

>d1gesa2 c.3.1.5 (A:147-262) Glutathione reductase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Glutathione reductase
species: Escherichia coli [TaxId: 562]

Probab=99.24  E-value=1e-11  Score=98.42  Aligned_cols=94  Identities=15%  Similarity=0.128  Sum_probs=74.3

Q ss_pred             CCCcEEEEcCcHHHHHHHHHHHHcCCCCCcEEEEcCCCCCCCCCCCCcccccCCCCCCCCCCCCCccccCCCCCCCCHhH
Q 012165           50 ENREFVIVGGGNAAGYAARTFVEHGMADGRLCIVSKEAYAPYERPALTKGYLFPLDKKPARLPGFHTCVGSGGERQTPEW  129 (469)
Q Consensus        50 ~~~~vvIIGgG~AGl~aA~~L~~~g~~~~~V~vie~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  129 (469)
                      .+++++|||||+.|+.+|..|++.|.   +|||+++.+...   |.+..           .+           .....+.
T Consensus        20 ~p~~vvIiGgG~ig~E~A~~l~~~G~---~Vtlve~~~~~l---~~~d~-----------~~-----------~~~~~~~   71 (116)
T d1gesa2          20 LPERVAVVGAGYIGVELGGVINGLGA---KTHLFEMFDAPL---PSFDP-----------MI-----------SETLVEV   71 (116)
T ss_dssp             CCSEEEEECCSHHHHHHHHHHHHTTC---EEEEECSSSSSS---TTSCH-----------HH-----------HHHHHHH
T ss_pred             CCCEEEEECCChhhHHHHHHhhcccc---EEEEEeecchhh---hhcch-----------hh-----------HHHHHHH
Confidence            34789999999999999999999987   899999876531   11100           00           1234677


Q ss_pred             HHHCCcEEEeCCcEEEEeCCC---cEEEeCCCeEEEeccEEeccC
Q 012165          130 YKEKGIEMIYQDPVTSIDIEK---QTLITNSGKLLKYGSLIVATG  171 (469)
Q Consensus       130 ~~~~~i~~~~~~~v~~id~~~---~~v~~~~g~~~~yd~lVlAtG  171 (469)
                      +++.|+++++++.+..+....   .++++++|+++++|.||+|||
T Consensus        72 l~~~GV~~~~~~~v~~i~~~~~~~~~v~~~~g~~~~~D~vi~a~G  116 (116)
T d1gesa2          72 MNAEGPQLHTNAIPKAVVKNTDGSLTLELEDGRSETVDCLIWAIG  116 (116)
T ss_dssp             HHHHSCEEECSCCEEEEEECTTSCEEEEETTSCEEEESEEEECSC
T ss_pred             HHHCCCEEEeCCEEEEEEEcCCcEEEEEECCCCEEEcCEEEEecC
Confidence            888999999999999987654   368889999999999999998

>d2iida1 c.3.1.2 (A:4-319,A:433-486) L-aminoacid oxidase {Malayan pit viper (Calloselasma rhodostoma) [TaxId: 8717]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD-linked reductases, N-terminal domain
domain: L-aminoacid oxidase
species: Malayan pit viper (Calloselasma rhodostoma) [TaxId: 8717]

Probab=99.21  E-value=7.9e-13  Score=125.65  Aligned_cols=111  Identities=13%  Similarity=0.187  Sum_probs=66.1

Q ss_pred             HHHHHHcCcEEEcCCeEEEEEeCCCCcEEEEEc--CCCCEEeCCEEEEccCCc--------cCCchhhhcCCcc-cCCC-
Q 012165          237 EQLYQQNGVKFVKGASIKNLEAGSDGRVAAVKL--EDGSTIDADTIVIGIGAK--------PTVSPFERVGLNS-SVGG-  304 (469)
Q Consensus       237 ~~~l~~~gV~~~~~~~v~~i~~~~~~~v~~v~~--~~g~~i~~D~vi~a~G~~--------p~~~~~~~~gl~~-~~g~-  304 (469)
                      ..++++.|+++++++.|++|+.++++....+..  .++++++||.||+|++..        |.........+.. ...+ 
T Consensus       242 ~~l~~~~g~~i~~~~~V~~I~~~~~~v~v~~~~~~~~~~~~~aD~VI~A~p~~~l~~i~~~p~l~~~~~~ai~~~~~~~~  321 (370)
T d2iida1         242 TAMYRDIQDKVHFNAQVIKIQQNDQKVTVVYETLSKETPSVTADYVIVCTTSRAVRLIKFNPPLLPKKAHALRSVFTPYQ  321 (370)
T ss_dssp             HHHHHHTGGGEESSCEEEEEEECSSCEEEEEECSSSCCCEEEESEEEECSCHHHHTTSEEESCCCHHHHHHHHHCCCTTH
T ss_pred             HHHHHhcCCccccCceEEEEEEeCCeEEEEEEecCCCeEEEEeeEEEecCCHHHHhhCccCCCCCHHHHHHHHhcCCccc
Confidence            455678899999999999999765554333333  344689999999998642        2111100000000 0000 


Q ss_pred             -EEeCCCCCCCCCceEEeccccccCCccCCcccccchHHHHHHHHHHHHHHHh
Q 012165          305 -IQVDGQFRTRMPGIFAIGDVAAFPLKMYDRTARVEHVDHARQSAQHCIKALL  356 (469)
Q Consensus       305 -i~Vd~~~~t~~~~Vfa~GD~a~~~~~~~~~~~~~~~~~~A~~~a~~~a~~i~  356 (469)
                       ...+..+.+...+||.+||++..+..         .+..|+..|..+|.+|.
T Consensus       322 ~~~~~~~~~~~~g~v~~aGd~~~~~~~---------~~~~a~~sG~~aA~~i~  365 (370)
T d2iida1         322 FQHFSDPLTASQGRIYFAGEYTAQAHG---------WIDSTIKSGLRAARDVN  365 (370)
T ss_dssp             HHHHHHHHHCCBTTEEECSGGGSSSSS---------CHHHHHHHHHHHHHHHH
T ss_pred             ccccchhhhcccCCEEEecccccCCCc---------ccHHHHHHHHHHHHHHH
Confidence             11112222344679999998865431         34568888999988874

>d1d7ya2 c.3.1.5 (A:116-236) NADH-dependent ferredoxin reductase, BphA4 {Pseudomonas sp., KKS102 [TaxId: 306]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: NADH-dependent ferredoxin reductase, BphA4
species: Pseudomonas sp., KKS102 [TaxId: 306]

Probab=99.21  E-value=1.9e-11  Score=97.48  Aligned_cols=93  Identities=17%  Similarity=0.263  Sum_probs=73.2

Q ss_pred             CCCcEEEEcCcHHHHHHHHHHHHcCCCCCcEEEEcCCCCCCCCCCCCcccccCCCCCCCCCCCCCccccCCCCCCCCHhH
Q 012165           50 ENREFVIVGGGNAAGYAARTFVEHGMADGRLCIVSKEAYAPYERPALTKGYLFPLDKKPARLPGFHTCVGSGGERQTPEW  129 (469)
Q Consensus        50 ~~~~vvIIGgG~AGl~aA~~L~~~g~~~~~V~vie~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  129 (469)
                      ..++++|||||+.|+.+|..|+++|.   +|+++++.+.+...       .+   +.   .+           .....+.
T Consensus        29 ~~~~vvIIGgG~iG~E~A~~l~~~g~---~Vtli~~~~~~l~~-------~~---~~---~~-----------~~~~~~~   81 (121)
T d1d7ya2          29 PQSRLLIVGGGVIGLELAATARTAGV---HVSLVETQPRLMSR-------AA---PA---TL-----------ADFVARY   81 (121)
T ss_dssp             TTCEEEEECCSHHHHHHHHHHHHTTC---EEEEEESSSSTTTT-------TS---CH---HH-----------HHHHHHH
T ss_pred             cCCeEEEECcchhHHHHHHHhhcccc---eEEEEeeccccccc-------cC---CH---HH-----------HHHHHHH
Confidence            34799999999999999999999987   89999988763110       00   00   00           1234567


Q ss_pred             HHHCCcEEEeCCcEEEEeCCCcEEEeCCCeEEEeccEEeccC
Q 012165          130 YKEKGIEMIYQDPVTSIDIEKQTLITNSGKLLKYGSLIVATG  171 (469)
Q Consensus       130 ~~~~~i~~~~~~~v~~id~~~~~v~~~~g~~~~yd~lVlAtG  171 (469)
                      +++.||+++++++|+++..  ..++++||+++++|.+|+|+|
T Consensus        82 l~~~GV~i~~~~~v~~~~~--~~v~l~dg~~i~~D~vi~a~G  121 (121)
T d1d7ya2          82 HAAQGVDLRFERSVTGSVD--GVVLLDDGTRIAADMVVVGIG  121 (121)
T ss_dssp             HHTTTCEEEESCCEEEEET--TEEEETTSCEEECSEEEECSC
T ss_pred             HHHCCcEEEeCCEEEEEeC--CEEEECCCCEEECCEEEEeeC
Confidence            8899999999999998764  468899999999999999998

>d1h6va2 c.3.1.5 (A:171-292) Mammalian thioredoxin reductase {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Mammalian thioredoxin reductase
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=99.21  E-value=1.7e-11  Score=97.87  Aligned_cols=89  Identities=25%  Similarity=0.385  Sum_probs=70.4

Q ss_pred             HHHHHHhhhcCCeEEEEcCChHHHHHHHHHHhCCCeEe-----------------eeHHHHHHcCcEEEcCCeEEEEEeC
Q 012165          197 ADALISSLEKAKKVVVVGGGYIGMEVAAAAVGWKLDTT-----------------RYEQLYQQNGVKFVKGASIKNLEAG  259 (469)
Q Consensus       197 ~~~~~~~~~~~~~vvVvG~G~~g~e~A~~l~~~g~~v~-----------------~~~~~l~~~gV~~~~~~~v~~i~~~  259 (469)
                      ++.+.+.-..+++++|||+|++|+|+|..|+++|.+|+                 .+.+.++++||++++++.+++++..
T Consensus        10 sd~~~~l~~~P~~vvIIGgG~iG~E~A~~l~~lG~~Vtii~~~~~l~~~D~~~~~~l~~~l~~~Gv~i~~~~~v~~~~~~   89 (122)
T d1h6va2          10 SDDLFSLPYCPGKTLVVGASYVALECAGFLAGIGLDVTVMVRSILLRGFDQDMANKIGEHMEEHGIKFIRQFVPTKIEQI   89 (122)
T ss_dssp             HHHHTTCSSCCCSEEEECCSHHHHHHHHHHHHTTCCEEEEESSSSSTTSCHHHHHHHHHHHHHTTEEEEESCEEEEEEEE
T ss_pred             chHHhCcccCCCeEEEECCCccHHHHHHHHhhcCCeEEEEEechhhccCCHHHHHHHHHHHHHCCCEEEECCEEEEEEEe
Confidence            55565555678999999999999999999999999998                 6788899999999999999999754


Q ss_pred             CCC--cEEEEEcCCC-----CEEeCCEEEEccC
Q 012165          260 SDG--RVAAVKLEDG-----STIDADTIVIGIG  285 (469)
Q Consensus       260 ~~~--~v~~v~~~~g-----~~i~~D~vi~a~G  285 (469)
                      +++  ....+.+.++     ..+++|.|++|+|
T Consensus        90 ~~~~~~~~~v~~~~~~~~~~~~~~~D~vl~AiG  122 (122)
T d1h6va2          90 EAGTPGRLKVTAKSTNSEETIEDEFNTVLLAVG  122 (122)
T ss_dssp             ECSTTCEEEEEEECTTSCEEEEEEESEEECCCC
T ss_pred             cCCCccEEEEEEEECCCCcEEEEECCEEEEEeC
Confidence            322  1223444332     2468999999998

>d2i0za1 c.3.1.8 (A:1-192,A:362-420) Flavoprotein BC4706 {Bacillus cereus [TaxId: 1396]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: HI0933 N-terminal domain-like
domain: Flavoprotein BC4706
species: Bacillus cereus [TaxId: 1396]

Probab=99.20  E-value=9.3e-12  Score=113.03  Aligned_cols=122  Identities=19%  Similarity=0.267  Sum_probs=75.7

Q ss_pred             CCCcEEEEcCcHHHHHHHHHHHHcCCCCCcEEEEcCCCCCCCC-------CCCCcccc----c---CCCCCC-C------
Q 012165           50 ENREFVIVGGGNAAGYAARTFVEHGMADGRLCIVSKEAYAPYE-------RPALTKGY----L---FPLDKK-P------  108 (469)
Q Consensus        50 ~~~~vvIIGgG~AGl~aA~~L~~~g~~~~~V~vie~~~~~~~~-------~~~l~~~~----~---~~~~~~-~------  108 (469)
                      +++||+|||||+||++||..|+++|+   +|+|+|+.+.....       ++......    +   ...... .      
T Consensus         1 M~yDViIIGaG~aGl~aA~~la~~G~---~V~liEk~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   77 (251)
T d2i0za1           1 MHYDVIVIGGGPSGLMAAIGAAEEGA---NVLLLDKGNKLGRKLAISGGGRCNVTNRLPLDEIVKHIPGNGRFLYSAFSI   77 (251)
T ss_dssp             CCCSEEEECCSHHHHHHHHHHHHTTC---CEEEECSSSSSCHHHHHTGGGTCCCEECSCHHHHHHTCTBTGGGGHHHHHH
T ss_pred             CcCCEEEECcCHHHHHHHHHHHHCCC---cEEEEeCCCCCCcceeccCCcceecccccccchhhcccccchhhhhhhhhh
Confidence            46999999999999999999999998   79999998754210       00000000    0   000000 0      


Q ss_pred             ------------CCCCCCcccc-----CCC----CCCCCHhHHHHCCcEEEeCCcEEEEeCCCc---EEEeCCCeEEEec
Q 012165          109 ------------ARLPGFHTCV-----GSG----GERQTPEWYKEKGIEMIYQDPVTSIDIEKQ---TLITNSGKLLKYG  164 (469)
Q Consensus       109 ------------~~~~~~~~~~-----~~~----~~~~~~~~~~~~~i~~~~~~~v~~id~~~~---~v~~~~g~~~~yd  164 (469)
                                  ..++......     ...    ....+.+.+++.|++++.+++|+.+..++.   .|.+++++.+++|
T Consensus        78 ~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~i~~~L~~~~~~~gv~i~~~~~v~~i~~~~~~~~~v~~~~g~~i~a~  157 (251)
T d2i0za1          78 FNNEDIITFFENLGVKLKEEDHGRMFPVSNKAQSVVDALLTRLKDLGVKIRTNTPVETIEYENGQTKAVILQTGEVLETN  157 (251)
T ss_dssp             SCHHHHHHHHHHTTCCEEECGGGEEEETTCCHHHHHHHHHHHHHHTTCEEECSCCEEEEEEETTEEEEEEETTCCEEECS
T ss_pred             hhhHHHHHHHHhcCCccccccccceecccccHHHHHHHHHHHHHHcCCcccCCcEEEEEEEECCEEEEEEeCCCCeEecC
Confidence                        0000000000     000    000112345678999999999999987654   4678899999999


Q ss_pred             cEEeccCCCC
Q 012165          165 SLIVATGCTA  174 (469)
Q Consensus       165 ~lVlAtG~~~  174 (469)
                      +||+|||...
T Consensus       158 ~vI~AtGg~S  167 (251)
T d2i0za1         158 HVVIAVGGKS  167 (251)
T ss_dssp             CEEECCCCSS
T ss_pred             eEEEccCCcc
Confidence            9999999764

>d1q1ra2 c.3.1.5 (A:115-247) Putidaredoxin reductase {Pseudomonas putida [TaxId: 303]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Putidaredoxin reductase
species: Pseudomonas putida [TaxId: 303]

Probab=99.19  E-value=2.1e-11  Score=98.96  Aligned_cols=96  Identities=17%  Similarity=0.282  Sum_probs=74.1

Q ss_pred             CCCCcEEEEcCcHHHHHHHHHHHHcCCCCCcEEEEcCCCCCCCCCCCCcccccCCCCCCCCCCCCCccccCCCCCCCCHh
Q 012165           49 NENREFVIVGGGNAAGYAARTFVEHGMADGRLCIVSKEAYAPYERPALTKGYLFPLDKKPARLPGFHTCVGSGGERQTPE  128 (469)
Q Consensus        49 ~~~~~vvIIGgG~AGl~aA~~L~~~g~~~~~V~vie~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  128 (469)
                      ...++++|||||+.|+.+|..|++.|.   +|++++..+.. +.     . .+   .+..              .....+
T Consensus        33 ~~~k~v~VIGgG~iG~E~A~~l~~~g~---~Vtvie~~~~~-l~-----~-~~---~~~~--------------~~~~~~   85 (133)
T d1q1ra2          33 IADNRLVVIGGGYIGLEVAATAIKANM---HVTLLDTAARV-LE-----R-VT---APPV--------------SAFYEH   85 (133)
T ss_dssp             CTTCEEEEECCSHHHHHHHHHHHHTTC---EEEEECSSSST-TT-----T-TS---CHHH--------------HHHHHH
T ss_pred             ccCCEEEEECCchHHHHHHHHHHhhCc---ceeeeeecccc-cc-----c-cc---chhh--------------hhhhhh
Confidence            345799999999999999999999987   89999988753 10     0 00   0000              012346


Q ss_pred             HHHHCCcEEEeCCcEEEEeCCC-----cEEEeCCCeEEEeccEEeccC
Q 012165          129 WYKEKGIEMIYQDPVTSIDIEK-----QTLITNSGKLLKYGSLIVATG  171 (469)
Q Consensus       129 ~~~~~~i~~~~~~~v~~id~~~-----~~v~~~~g~~~~yd~lVlAtG  171 (469)
                      .+++.|++++++++|..++...     ..+.+++|+++++|.+|+|+|
T Consensus        86 ~~~~~GV~i~~~~~v~~i~~~~~~~~v~~v~~~~G~~i~~D~vi~a~G  133 (133)
T d1q1ra2          86 LHREAGVDIRTGTQVCGFEMSTDQQKVTAVLCEDGTRLPADLVIAGIG  133 (133)
T ss_dssp             HHHHHTCEEECSCCEEEEEECTTTCCEEEEEETTSCEEECSEEEECCC
T ss_pred             cccccccEEEeCCeEEEEEEeCCCceEEEEECCCCCEEECCEEEEeeC
Confidence            6789999999999999997643     257899999999999999998

>d1onfa1 c.3.1.5 (A:1-153,A:271-376) Glutathione reductase {Plasmodium falciparum [TaxId: 5833]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Glutathione reductase
species: Plasmodium falciparum [TaxId: 5833]

Probab=99.16  E-value=7e-15  Score=135.05  Aligned_cols=33  Identities=27%  Similarity=0.562  Sum_probs=31.1

Q ss_pred             CcEEEEcCcHHHHHHHHHHHHcCCCCCcEEEEcCCC
Q 012165           52 REFVIVGGGNAAGYAARTFVEHGMADGRLCIVSKEA   87 (469)
Q Consensus        52 ~~vvIIGgG~AGl~aA~~L~~~g~~~~~V~vie~~~   87 (469)
                      ||++|||||+||++||.++++.|.   +|+|||++.
T Consensus         2 yDviVIG~G~aG~~aA~~aa~~G~---~V~liE~~~   34 (259)
T d1onfa1           2 YDLIVIGGGSGGMAAARRAARHNA---KVALVEKSR   34 (259)
T ss_dssp             BSEEEECCSHHHHHHHHHHHHTTC---CEEEEESSS
T ss_pred             ceEEEECCCHHHHHHHHHHHHCCC---eEEEEecCC
Confidence            799999999999999999999987   799999865

>d1gesa1 c.3.1.5 (A:3-146,A:263-335) Glutathione reductase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Glutathione reductase
species: Escherichia coli [TaxId: 562]

Probab=99.12  E-value=3.8e-14  Score=126.39  Aligned_cols=175  Identities=13%  Similarity=0.118  Sum_probs=95.6

Q ss_pred             CCCcEEEEcCcHHHHHHHHHHHHcCCCCCcEEEEcCCCCCC---CCCCCCccccc---------CCCC--------CCCC
Q 012165           50 ENREFVIVGGGNAAGYAARTFVEHGMADGRLCIVSKEAYAP---YERPALTKGYL---------FPLD--------KKPA  109 (469)
Q Consensus        50 ~~~~vvIIGgG~AGl~aA~~L~~~g~~~~~V~vie~~~~~~---~~~~~l~~~~~---------~~~~--------~~~~  109 (469)
                      ++|||+||||||||++||..+++.|.   +|+|||++..-+   +..+..++.+.         ....        ....
T Consensus         1 k~yDvvVIG~G~aG~~aA~~a~~~G~---kV~iiE~~~~GGtc~~~gc~p~k~l~~~a~~~~~~~~~~~~~g~~~~~~~~   77 (217)
T d1gesa1           1 KHYDYIAIGGGSGGIASINRAAMYGQ---KCALIEAKELGGTCVNVGCVPKKVMWHAAQIREAIHMYGPDYGFDTTINKF   77 (217)
T ss_dssp             CEEEEEEECCSHHHHHHHHHHHTTTC---CEEEEESSCTTHHHHHHSHHHHHHHHHHHHHHHHHHTTGGGGTEEEEEEEE
T ss_pred             CcCCEEEECCCHHHHHHHHHHHHCCC---EEEEEeccCcCCeEecccccccccchhhHHHHHHHHhhhhhcCccCCcccc
Confidence            36899999999999999999999987   799999864210   00000000000         0000        0000


Q ss_pred             CCCCCccc---cCCCCCCCCHhHHHHCCcEEEeCCcEEEEeCCCcEEEeCCCeEEEeccEEeccCCCCCcCCCCCCCCc-
Q 012165          110 RLPGFHTC---VGSGGERQTPEWYKEKGIEMIYQDPVTSIDIEKQTLITNSGKLLKYGSLIVATGCTASRFPEKIGGYL-  185 (469)
Q Consensus       110 ~~~~~~~~---~~~~~~~~~~~~~~~~~i~~~~~~~v~~id~~~~~v~~~~g~~~~yd~lVlAtG~~~~~~~~~~g~~~-  185 (469)
                      +++.....   .-..........+++.+|++..+.... .+  ...+. .++..+.++++++|||+.|. .|.+|+.+. 
T Consensus        78 ~~~~~~~~~~~~v~~~~~~~~~~l~~~gV~v~~~~~~~-~~--~~~~~-~~~~~~~~~~~iiatG~~p~-ip~ip~~~~l  152 (217)
T d1gesa1          78 NWETLIASRTAYIDRIHTSYENVLGKNNVDVIKGFARF-VD--AKTLE-VNGETITADHILIATGGRPS-HPREPANDNI  152 (217)
T ss_dssp             CHHHHHHHHHHHHHHHHHHHHHHHHHTTCEEEESCCEE-EE--TTEEE-ETTEEEEEEEEEECCCEEEC-CCEEESCTTS
T ss_pred             cHHHHHHHHHHHHHHHHHHHHHHHhCCeEEEEeeeccc-ce--eeeec-CCCceeeeeeeeeecCcccc-CCCCCCcCCc
Confidence            00000000   000000011234567799988764433 22  22222 35677999999999999987 465554321 


Q ss_pred             ----CcEEEecC-HHHHHHHHHhhhcCCeEEEEcCChHHHHHHHHHHhCCCeEe
Q 012165          186 ----PGVHYIRD-VADADALISSLEKAKKVVVVGGGYIGMEVAAAAVGWKLDTT  234 (469)
Q Consensus       186 ----~~v~~~~~-~~~~~~~~~~~~~~~~vvVvG~G~~g~e~A~~l~~~g~~v~  234 (469)
                          .++.+... ....+...  ....+++.++|+|.+|+|+|..+.+.|.+++
T Consensus       153 ~l~~~gv~~~~~~~i~~d~~~--~t~~~~i~~iG~g~~g~ela~~~~~~G~~v~  204 (217)
T d1gesa1         153 NLEAAGVKTNEKGYIVVDKYQ--NTNIEGIYAVGDNTGAVELTPVAVAAGRRLS  204 (217)
T ss_dssp             CHHHHTCCBCTTSCBCCCTTS--BCSSTTEEECSGGGTSCCCHHHHHHHHHHHH
T ss_pred             ccccccEEEcCCccEeeCchh--ccCCCcEEEECCCccHHHHHHHHHHHHHHHH
Confidence                11111110 00001100  0234689999999999999999988887664

>d1lvla2 c.3.1.5 (A:151-265) Dihydrolipoamide dehydrogenase {Pseudomonas putida [TaxId: 303]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Dihydrolipoamide dehydrogenase
species: Pseudomonas putida [TaxId: 303]

Probab=99.12  E-value=4.8e-11  Score=94.36  Aligned_cols=94  Identities=21%  Similarity=0.277  Sum_probs=70.5

Q ss_pred             CCCcEEEEcCcHHHHHHHHHHHHcCCCCCcEEEEcCCCCCCCCCCCCcccccCCCCCCCCCCCCCccccCCCCCCCCHhH
Q 012165           50 ENREFVIVGGGNAAGYAARTFVEHGMADGRLCIVSKEAYAPYERPALTKGYLFPLDKKPARLPGFHTCVGSGGERQTPEW  129 (469)
Q Consensus        50 ~~~~vvIIGgG~AGl~aA~~L~~~g~~~~~V~vie~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  129 (469)
                      .+++++|||||+.|+.+|..|++.|.   +|||++..+...   |.+        +.   ++           .....+.
T Consensus        20 ~p~~vvIiGgG~~G~E~A~~l~~~g~---~Vtlve~~~~il---~~~--------d~---~~-----------~~~l~~~   71 (115)
T d1lvla2          20 LPQHLVVVGGGYIGLELGIAYRKLGA---QVSVVEARERIL---PTY--------DS---EL-----------TAPVAES   71 (115)
T ss_dssp             CCSEEEEECCSHHHHHHHHHHHHHTC---EEEEECSSSSSS---TTS--------CH---HH-----------HHHHHHH
T ss_pred             CCCeEEEECCCHHHHHHHHHHhhccc---ceEEEeeecccc---ccc--------cc---hh-----------HHHHHHH
Confidence            34789999999999999999999987   899999886531   101        00   00           1234577


Q ss_pred             HHHCCcEEEeCCcEEEEeCCCcEEEeCCC--eEEEeccEEeccC
Q 012165          130 YKEKGIEMIYQDPVTSIDIEKQTLITNSG--KLLKYGSLIVATG  171 (469)
Q Consensus       130 ~~~~~i~~~~~~~v~~id~~~~~v~~~~g--~~~~yd~lVlAtG  171 (469)
                      +++.|++++++++|.+++.....+...++  +++++|.+++|||
T Consensus        72 l~~~gV~i~~~~~V~~i~~~~~~~~~~~~~~~~i~~D~vi~A~G  115 (115)
T d1lvla2          72 LKKLGIALHLGHSVEGYENGCLLANDGKGGQLRLEADRVLVAVG  115 (115)
T ss_dssp             HHHHTCEEETTCEEEEEETTEEEEECSSSCCCEECCSCEEECCC
T ss_pred             HHhhcceEEcCcEEEEEcCCeEEEEEcCCCeEEEEcCEEEEecC
Confidence            88999999999999999865444443333  4799999999998

>d1feca2 c.3.1.5 (A:170-286) Trypanothione reductase {Crithidia fasciculata [TaxId: 5656]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Trypanothione reductase
species: Crithidia fasciculata [TaxId: 5656]

Probab=99.10  E-value=1.1e-10  Score=92.55  Aligned_cols=96  Identities=20%  Similarity=0.300  Sum_probs=72.7

Q ss_pred             CCcEEEEcCcHHHHHHHHHHHHcCCCCCcEEEEcCCCCCCCCCCCCcccccCCCCCCCCCCCCCccccCCCCCCCCHhHH
Q 012165           51 NREFVIVGGGNAAGYAARTFVEHGMADGRLCIVSKEAYAPYERPALTKGYLFPLDKKPARLPGFHTCVGSGGERQTPEWY  130 (469)
Q Consensus        51 ~~~vvIIGgG~AGl~aA~~L~~~g~~~~~V~vie~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  130 (469)
                      +++++|||||+.|+.+|..|.+......+|+++++.+..           +...++.   +           .....+.+
T Consensus        18 p~~v~IiGgG~ig~E~A~~l~~~~~~g~~Vtli~~~~~i-----------l~~~d~~---~-----------~~~~~~~l   72 (117)
T d1feca2          18 PKRALCVGGGYISIEFAGIFNAYKARGGQVDLAYRGDMI-----------LRGFDSE---L-----------RKQLTEQL   72 (117)
T ss_dssp             CSEEEEECSSHHHHHHHHHHHHHSCTTCEEEEEESSSSS-----------STTSCHH---H-----------HHHHHHHH
T ss_pred             CCeEEEECCChHHHHHHHHhHhhcccccccceecccccc-----------cccccch---h-----------hHHHHHHH
Confidence            479999999999999998887764323489999977542           1100000   0           12345678


Q ss_pred             HHCCcEEEeCCcEEEEeCCC---cEEEeCCCeEEEeccEEeccC
Q 012165          131 KEKGIEMIYQDPVTSIDIEK---QTLITNSGKLLKYGSLIVATG  171 (469)
Q Consensus       131 ~~~~i~~~~~~~v~~id~~~---~~v~~~~g~~~~yd~lVlAtG  171 (469)
                      ++.|+++++++.+.++....   ..+.+++|++++||.+++|||
T Consensus        73 ~~~GI~v~~~~~v~~i~~~~~g~~~v~~~~g~~i~~D~Vi~a~G  116 (117)
T d1feca2          73 RANGINVRTHENPAKVTKNADGTRHVVFESGAEADYDVVMLAIG  116 (117)
T ss_dssp             HHTTEEEEETCCEEEEEECTTSCEEEEETTSCEEEESEEEECSC
T ss_pred             hhCcEEEEcCCEEEEEEECCCCEEEEEECCCCEEEcCEEEEecC
Confidence            89999999999999997543   368899999999999999999

>d1ps9a2 c.3.1.1 (A:466-627) 2,4-dienoyl-CoA reductase, C-terminal domain {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: C-terminal domain of adrenodoxin reductase-like
domain: 2,4-dienoyl-CoA reductase, C-terminal domain
species: Escherichia coli [TaxId: 562]

Probab=99.09  E-value=1.3e-10  Score=97.87  Aligned_cols=102  Identities=26%  Similarity=0.335  Sum_probs=78.2

Q ss_pred             CCcCCCCCCCCcCcEEEecCHHHHHHHHHhhhcCCeEEEEcCChHHHHHHHHHHhCCCeEe-------------------
Q 012165          174 ASRFPEKIGGYLPGVHYIRDVADADALISSLEKAKKVVVVGGGYIGMEVAAAAVGWKLDTT-------------------  234 (469)
Q Consensus       174 ~~~~~~~~g~~~~~v~~~~~~~~~~~~~~~~~~~~~vvVvG~G~~g~e~A~~l~~~g~~v~-------------------  234 (469)
                      |+ .|++||.+.+++++.     .+.+......+++|+|||||++|+|+|..+.+.|.+++                   
T Consensus         2 Pr-~p~IpG~d~~~V~~a-----~d~L~~~~~~gkrVvVIGgG~~g~d~a~~~~r~G~~~~~~~~~~~~~~~~~~~~~~~   75 (162)
T d1ps9a2           2 PR-TPPIDGIDHPKVLSY-----LDVLRDKAPVGNKVAIIGCGGIGFDTAMYLSQPGESTSQNIAGFCNEWGIDSSLQQA   75 (162)
T ss_dssp             EC-CCCCBTTTSTTEEEH-----HHHHTSCCCCCSEEEEECCHHHHHHHHHHHTCCSSCGGGCHHHHHHHTTBCTTCCSG
T ss_pred             CC-CCCCCCCCCCCeEEH-----HHHhhCccccCCceEEEcCchhHHHHHHHHHHcCCccceeHhhhhhhccCCcchhhh
Confidence            44 567899999999874     23344445678999999999999999999999886531                   


Q ss_pred             -------------------------------------eeHHHHHHcCcEEEcCCeEEEEEeCCCCcEEEEEcCCC--CEE
Q 012165          235 -------------------------------------RYEQLYQQNGVKFVKGASIKNLEAGSDGRVAAVKLEDG--STI  275 (469)
Q Consensus       235 -------------------------------------~~~~~l~~~gV~~~~~~~v~~i~~~~~~~v~~v~~~~g--~~i  275 (469)
                                                           .....++..||+++.++.+.+++  +++..  +.. +|  +++
T Consensus        76 ~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~gv~~~~~~~v~~i~--~~gv~--~~~-~g~e~~i  150 (162)
T d1ps9a2          76 GGLSPQGMQIPRSPRQIVMLQRKASKPGQGLGKTTGWIHRTTLLSRGVKMIPGVSYQKID--DDGLH--VVI-NGETQVL  150 (162)
T ss_dssp             GGBCTTCCCCCCCSSEEEEECSSCSCTTTTSCTTTHHHHHHHHHHTTCEEECSCEEEEEE--TTEEE--EEE-TTEEEEE
T ss_pred             cccccccceeccccceEEEEEeccchhccccchhhhHHHHHHHhhCCeEEEeeeEEEEEc--CCCCE--Eec-CCeEEEE
Confidence                                                 23567889999999999999997  34432  222 34  358


Q ss_pred             eCCEEEEccCC
Q 012165          276 DADTIVIGIGA  286 (469)
Q Consensus       276 ~~D~vi~a~G~  286 (469)
                      +||.||+|+|.
T Consensus       151 ~aD~Vv~A~Gq  161 (162)
T d1ps9a2         151 AVDNVVICAGQ  161 (162)
T ss_dssp             CCSEEEECCCE
T ss_pred             ECCEEEECCCC
Confidence            99999999995

>d1q1ra1 c.3.1.5 (A:2-114,A:248-319) Putidaredoxin reductase {Pseudomonas putida [TaxId: 303]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Putidaredoxin reductase
species: Pseudomonas putida [TaxId: 303]

Probab=99.05  E-value=8.7e-10  Score=94.65  Aligned_cols=112  Identities=30%  Similarity=0.459  Sum_probs=86.3

Q ss_pred             CCcEEEEcCcHHHHHHHHHHHHcCCCCCcEEEEcCCCCCCCCCCCCcccccCCCCCCCCCCCCCccccCCCCCCCCHhHH
Q 012165           51 NREFVIVGGGNAAGYAARTFVEHGMADGRLCIVSKEAYAPYERPALTKGYLFPLDKKPARLPGFHTCVGSGGERQTPEWY  130 (469)
Q Consensus        51 ~~~vvIIGgG~AGl~aA~~L~~~g~~~~~V~vie~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  130 (469)
                      ..+|||||||++|+.+|..|++.|. +..|+++++++..++.+..++..+...... ....           ........
T Consensus         3 ~~~VvIIGgG~~G~e~A~~l~~~g~-~v~v~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~-----------~~~~~~~~   69 (185)
T d1q1ra1           3 NDNVVIVGTGLAGVEVAFGLRASGW-EGNIRLVGDATVIPHHLPPLSKAYLAGKAT-AESL-----------YLRTPDAY   69 (185)
T ss_dssp             SCEEEEECCSHHHHHHHHHHHHTTC-CSEEEEECSCCSCCBCSGGGGTTTTTTCSC-SGGG-----------BSSCHHHH
T ss_pred             CCCEEEECCcHHHHHHHHHHHHcCC-ceEEEEecCccccchhhhHHHHHHHHhhhh-hhhh-----------hhhhhhhh
Confidence            4689999999999999999999997 667888888887777655554432221111 1110           23455667


Q ss_pred             HHCCcEEEeCCcEEEEeCCCcEEEeCCCeEEEeccEEeccCCCCC
Q 012165          131 KEKGIEMIYQDPVTSIDIEKQTLITNSGKLLKYGSLIVATGCTAS  175 (469)
Q Consensus       131 ~~~~i~~~~~~~v~~id~~~~~v~~~~g~~~~yd~lVlAtG~~~~  175 (469)
                      ...+..+..+..+..++.+...+...++.++.+|.+++++|..|.
T Consensus        70 ~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~i~~d~~i~~~G~~~~  114 (185)
T d1q1ra1          70 AAQNIQLLGGTQVTAINRDRQQVILSDGRALDYDRLVLATGGRPL  114 (185)
T ss_dssp             HHTTEEEECSCCEEEEETTTTEEEETTSCEEECSEEEECCCEEEE
T ss_pred             cccceeeeccceeeeecccccEEEeeceeEEEeeeeeeeeecccC
Confidence            788888888889999999999999999999999999999998764

>d1y0pa2 c.3.1.4 (A:111-361,A:512-568) Flavocytochrome c3 (respiratory fumarate reductase) {Shewanella frigidimarina [TaxId: 56812]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: Succinate dehydrogenase/fumarate reductase flavoprotein N-terminal domain
domain: Flavocytochrome c3 (respiratory fumarate reductase)
species: Shewanella frigidimarina [TaxId: 56812]

Probab=99.05  E-value=6.8e-10  Score=103.69  Aligned_cols=51  Identities=10%  Similarity=0.169  Sum_probs=41.1

Q ss_pred             eHHHHHHcCcEEEcCCeEEEEEeCCCCcEEEEEcCC--C--CEEeCCEEEEccCC
Q 012165          236 YEQLYQQNGVKFVKGASIKNLEAGSDGRVAAVKLED--G--STIDADTIVIGIGA  286 (469)
Q Consensus       236 ~~~~l~~~gV~~~~~~~v~~i~~~~~~~v~~v~~~~--g--~~i~~D~vi~a~G~  286 (469)
                      +.+.+++.|+++++++.+.++..++++++.+|...+  +  ..+.++.||+|+|-
T Consensus       151 l~~~a~~~gv~i~~~~~v~~li~~~~G~V~Gv~~~~~~~~~~~i~Ak~VVlAtGG  205 (308)
T d1y0pa2         151 LYDNAVKRNIDLRMNTRGIEVLKDDKGTVKGILVKGMYKGYYWVKADAVILATGG  205 (308)
T ss_dssp             HHHHHHHTTCEEESSEEEEEEEECTTSCEEEEEEEETTTEEEEEECSEEEECCCC
T ss_pred             HHHHHHhccceEEEeeccchhhhhcccccccccccccccceeEeecCeEEEccCc
Confidence            445567889999999999998877778888887653  2  25899999999983

>d3lada2 c.3.1.5 (A:159-277) Dihydrolipoamide dehydrogenase {Azotobacter vinelandii [TaxId: 354]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Dihydrolipoamide dehydrogenase
species: Azotobacter vinelandii [TaxId: 354]

Probab=99.04  E-value=3e-10  Score=90.15  Aligned_cols=95  Identities=17%  Similarity=0.306  Sum_probs=72.3

Q ss_pred             CCCCcEEEEcCcHHHHHHHHHHHHcCCCCCcEEEEcCCCCCCCCCCCCcccccCCCCCCCCCCCCCccccCCCCCCCCHh
Q 012165           49 NENREFVIVGGGNAAGYAARTFVEHGMADGRLCIVSKEAYAPYERPALTKGYLFPLDKKPARLPGFHTCVGSGGERQTPE  128 (469)
Q Consensus        49 ~~~~~vvIIGgG~AGl~aA~~L~~~g~~~~~V~vie~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  128 (469)
                      ..+++++|||||+-|+.+|..|++.|.   +|++++..+...   |.+..        ..              .....+
T Consensus        20 ~~p~~i~IiG~G~ig~E~A~~l~~~G~---~Vtiv~~~~~ll---~~~d~--------ei--------------~~~l~~   71 (119)
T d3lada2          20 NVPGKLGVIGAGVIGLELGSVWARLGA---EVTVLEAMDKFL---PAVDE--------QV--------------AKEAQK   71 (119)
T ss_dssp             SCCSEEEEECCSHHHHHHHHHHHHTTC---EEEEEESSSSSS---TTSCH--------HH--------------HHHHHH
T ss_pred             cCCCeEEEECCChHHHHHHHHHHHcCC---ceEEEEeecccC---Ccccc--------hh--------------HHHHHH
Confidence            445899999999999999999999987   899999876531   11100        00              123467


Q ss_pred             HHHHCCcEEEeCCcEEEEeCCCc--EEEeCCC---eEEEeccEEeccC
Q 012165          129 WYKEKGIEMIYQDPVTSIDIEKQ--TLITNSG---KLLKYGSLIVATG  171 (469)
Q Consensus       129 ~~~~~~i~~~~~~~v~~id~~~~--~v~~~~g---~~~~yd~lVlAtG  171 (469)
                      ++++.|+++++++++++++.++.  ++++.++   +++.+|++++|+|
T Consensus        72 ~l~~~Gv~i~~~~~v~~i~~~~~~v~v~~~~~~~~~~~~~D~vlvAvG  119 (119)
T d3lada2          72 ILTKQGLKILLGARVTGTEVKNKQVTVKFVDAEGEKSQAFDKLIVAVG  119 (119)
T ss_dssp             HHHHTTEEEEETCEEEEEEECSSCEEEEEESSSEEEEEEESEEEECSC
T ss_pred             HHHhcCceeecCcEEEEEEEeCCEEEEEEEECCCCEEEECCEEEEeeC
Confidence            78899999999999999987665  4555443   5799999999998

>d1aoga2 c.3.1.5 (A:170-286) Trypanothione reductase {Trypanosoma cruzi [TaxId: 5693]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Trypanothione reductase
species: Trypanosoma cruzi [TaxId: 5693]

Probab=99.03  E-value=4.4e-10  Score=88.93  Aligned_cols=95  Identities=19%  Similarity=0.345  Sum_probs=72.7

Q ss_pred             CCCcEEEEcCcHHHHHHHHHHHHcCCCCCcEEEEcCCCCCCCCCCCCcccccCCCCCCCCCCCCCccccCCCCCCCCHhH
Q 012165           50 ENREFVIVGGGNAAGYAARTFVEHGMADGRLCIVSKEAYAPYERPALTKGYLFPLDKKPARLPGFHTCVGSGGERQTPEW  129 (469)
Q Consensus        50 ~~~~vvIIGgG~AGl~aA~~L~~~g~~~~~V~vie~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  129 (469)
                      .+++++|||||+.|+.+|..|.+.+....+|++++..+..           +...+.   .+           .....+.
T Consensus        19 ~p~~v~ivGgG~ig~E~A~~l~~l~~~~~~Vtli~~~~~i-----------L~~~d~---~~-----------~~~l~~~   73 (117)
T d1aoga2          19 PPRRVLTVGGGFISVEFAGIFNAYKPKDGQVTLCYRGEMI-----------LRGFDH---TL-----------REELTKQ   73 (117)
T ss_dssp             CCSEEEEECSSHHHHHHHHHHHHHCCTTCEEEEEESSSSS-----------STTSCH---HH-----------HHHHHHH
T ss_pred             cCCeEEEECCcHHHHHHHHHhhhcccCCcEEEEEeccchh-----------hcccch---HH-----------HHHHHHH
Confidence            3479999999999999999988887645689999986542           100000   00           1235677


Q ss_pred             HHHCCcEEEeCCcEEEEeCCC---cEEEeCCCeEEEeccEEec
Q 012165          130 YKEKGIEMIYQDPVTSIDIEK---QTLITNSGKLLKYGSLIVA  169 (469)
Q Consensus       130 ~~~~~i~~~~~~~v~~id~~~---~~v~~~~g~~~~yd~lVlA  169 (469)
                      +++.|+++++++++.+++...   ..+++++|+++++|.+++|
T Consensus        74 l~~~GV~v~~~~~v~~ie~~~~~~~~v~~~~G~~i~~D~Vi~A  116 (117)
T d1aoga2          74 LTANGIQILTKENPAKVELNADGSKSVTFESGKKMDFDLVMMA  116 (117)
T ss_dssp             HHHTTCEEEESCCEEEEEECTTSCEEEEETTSCEEEESEEEEC
T ss_pred             HHhcCcEEEcCCEEEEEEEcCCCeEEEEECCCcEEEeCEEEEe
Confidence            899999999999999997532   4789999999999999998

>d1w4xa1 c.3.1.5 (A:10-154,A:390-542) Phenylacetone monooxygenase {Thermobifida fusca [TaxId: 2021]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Phenylacetone monooxygenase
species: Thermobifida fusca [TaxId: 2021]

Probab=99.01  E-value=6.1e-11  Score=110.21  Aligned_cols=115  Identities=20%  Similarity=0.271  Sum_probs=73.8

Q ss_pred             CCCcEEEEcCcHHHHHHHHHHHHcCCCCCcEEEEcCCCCCCC----CC-CCCc----c-cccCCCC-------CCCCCCC
Q 012165           50 ENREFVIVGGGNAAGYAARTFVEHGMADGRLCIVSKEAYAPY----ER-PALT----K-GYLFPLD-------KKPARLP  112 (469)
Q Consensus        50 ~~~~vvIIGgG~AGl~aA~~L~~~g~~~~~V~vie~~~~~~~----~~-~~l~----~-~~~~~~~-------~~~~~~~  112 (469)
                      ...||+|||||++||++|.+|++.|+   +++|+|+.+..+.    ++ |.+.    . .+.....       .....+|
T Consensus         6 ~~~dV~IIGAG~sGl~~a~~L~~~G~---~v~i~Ek~~~iGGtW~~n~ypg~~~d~~~~~~~~s~~~~~~~~~~~~~~~p   82 (298)
T d1w4xa1           6 EEVDVLVVGAGFSGLYALYRLRELGR---SVHVIETAGDVGGVWYWNRYPGARCDIESIEYCYSFSEEVLQEWNWTERYA   82 (298)
T ss_dssp             SEEEEEEECCSHHHHHHHHHHHHTTC---CEEEECSSSSSCTHHHHCCCTTCBCSSCTTTSSCCSCHHHHHHCCCCBSSC
T ss_pred             CCCCEEEECccHHHHHHHHHHHhCCC---CEEEEEcCCCcccccccCCCCCceeccccccccccccccccCCCCCccccC
Confidence            45799999999999999999999998   7999999876531    11 1110    0 0000000       0000000


Q ss_pred             CCccccCCCCCCCCHhHHHHCCc--EEEeCCcEEEEeC--CCc--EEEeCCCeEEEeccEEeccCC
Q 012165          113 GFHTCVGSGGERQTPEWYKEKGI--EMIYQDPVTSIDI--EKQ--TLITNSGKLLKYGSLIVATGC  172 (469)
Q Consensus       113 ~~~~~~~~~~~~~~~~~~~~~~i--~~~~~~~v~~id~--~~~--~v~~~~g~~~~yd~lVlAtG~  172 (469)
                      .     ..+....+.++.+++++  .++++++|+++..  +..  +|++.++.++++|+||+|||.
T Consensus        83 ~-----~~e~~~Yl~~~a~~~~L~~~I~f~t~V~~~~~de~~~~W~V~~~~~~~~~~~~~i~atG~  143 (298)
T d1w4xa1          83 S-----QPEILRYINFVADKFDLRSGITFHTTVTAAAFDEATNTWTVDTNHGDRIRARYLIMASGQ  143 (298)
T ss_dssp             B-----HHHHHHHHHHHHHHTTGGGGEECSCCEEEEEEETTTTEEEEEETTCCEEEEEEEEECCCS
T ss_pred             c-----cchHHHHHHHHHHHcCCcccccCCcEEEEEEEecCCCceeeccccccccccceEEEeecc
Confidence            0     00001123445567787  4899999999963  322  788889999999999999994

>d1m6ia2 c.3.1.5 (A:264-400) Apoptosis-inducing factor (AIF) {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Apoptosis-inducing factor (AIF)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.01  E-value=3.3e-10  Score=92.34  Aligned_cols=94  Identities=19%  Similarity=0.276  Sum_probs=71.8

Q ss_pred             CCcEEEEcCcHHHHHHHHHHHH----cCCCCCcEEEEcCCCCCCCCCCCCcccccCCCCCCCCCCCCCccccCCCCCCCC
Q 012165           51 NREFVIVGGGNAAGYAARTFVE----HGMADGRLCIVSKEAYAPYERPALTKGYLFPLDKKPARLPGFHTCVGSGGERQT  126 (469)
Q Consensus        51 ~~~vvIIGgG~AGl~aA~~L~~----~g~~~~~V~vie~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  126 (469)
                      .++++|||||+.|+.+|..|.+    .|.   +|+++++++..-      ++ . ++     ..+           ....
T Consensus        37 ~k~i~IvGgG~~G~E~A~~l~~~~~~~g~---~Vt~i~~~~~~l------~~-~-~~-----~~~-----------~~~~   89 (137)
T d1m6ia2          37 VKSITIIGGGFLGSELACALGRKARALGT---EVIQLFPEKGNM------GK-I-LP-----EYL-----------SNWT   89 (137)
T ss_dssp             CSEEEEECCSHHHHHHHHHHHHHHHHHTC---EEEEECSSSSTT------TT-T-SC-----HHH-----------HHHH
T ss_pred             CCEEEEECCCHHHHHHHHHHHHHHHhcCC---EEEEecccccCC------cc-c-CC-----HHH-----------HHHH
Confidence            4689999999999999998864    344   899999877531      00 0 00     000           1134


Q ss_pred             HhHHHHCCcEEEeCCcEEEEeCCCc--EEEeCCCeEEEeccEEeccC
Q 012165          127 PEWYKEKGIEMIYQDPVTSIDIEKQ--TLITNSGKLLKYGSLIVATG  171 (469)
Q Consensus       127 ~~~~~~~~i~~~~~~~v~~id~~~~--~v~~~~g~~~~yd~lVlAtG  171 (469)
                      .+.+++.|+++++++.|.+++.++.  .+++++|+++++|.+|+|+|
T Consensus        90 ~~~l~~~GV~~~~~~~V~~i~~~~~~~~v~l~~G~~i~aD~Vi~A~G  136 (137)
T d1m6ia2          90 MEKVRREGVKVMPNAIVQSVGVSSGKLLIKLKDGRKVETDHIVAAVG  136 (137)
T ss_dssp             HHHHHTTTCEEECSCCEEEEEEETTEEEEEETTSCEEEESEEEECCC
T ss_pred             HHHHHhCCcEEEeCCEEEEEEecCCEEEEEECCCCEEECCEEEEeec
Confidence            5678899999999999999987554  68889999999999999999

>d2i0za1 c.3.1.8 (A:1-192,A:362-420) Flavoprotein BC4706 {Bacillus cereus [TaxId: 1396]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: HI0933 N-terminal domain-like
domain: Flavoprotein BC4706
species: Bacillus cereus [TaxId: 1396]

Probab=99.01  E-value=2.6e-09  Score=96.35  Aligned_cols=141  Identities=21%  Similarity=0.325  Sum_probs=100.5

Q ss_pred             eEEEEcCChHHHHHHHHHHhCCCeEe------------------------------------------------------
Q 012165          209 KVVVVGGGYIGMEVAAAAVGWKLDTT------------------------------------------------------  234 (469)
Q Consensus       209 ~vvVvG~G~~g~e~A~~l~~~g~~v~------------------------------------------------------  234 (469)
                      .|+|||+|+.|+-+|..|++.|.+|.                                                      
T Consensus         4 DViIIGaG~aGl~aA~~la~~G~~V~liEk~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   83 (251)
T d2i0za1           4 DVIVIGGGPSGLMAAIGAAEEGANVLLLDKGNKLGRKLAISGGGRCNVTNRLPLDEIVKHIPGNGRFLYSAFSIFNNEDI   83 (251)
T ss_dssp             SEEEECCSHHHHHHHHHHHHTTCCEEEECSSSSSCHHHHHTGGGTCCCEECSCHHHHHHTCTBTGGGGHHHHHHSCHHHH
T ss_pred             CEEEECcCHHHHHHHHHHHHCCCcEEEEeCCCCCCcceeccCCcceecccccccchhhcccccchhhhhhhhhhhhhHHH
Confidence            58999999999999999999999886                                                      


Q ss_pred             -------------------------------eeHHHHHHcCcEEEcCCeEEEEEeCCCCcEEEEEcCCCCEEeCCEEEEc
Q 012165          235 -------------------------------RYEQLYQQNGVKFVKGASIKNLEAGSDGRVAAVKLEDGSTIDADTIVIG  283 (469)
Q Consensus       235 -------------------------------~~~~~l~~~gV~~~~~~~v~~i~~~~~~~v~~v~~~~g~~i~~D~vi~a  283 (469)
                                                     .+.+.+++.||+++++++|+++..+ ++.+..|.+++|+.+.+|.||+|
T Consensus        84 ~~~~~~~g~~~~~~~~~~~~~~~~~~~~i~~~L~~~~~~~gv~i~~~~~v~~i~~~-~~~~~~v~~~~g~~i~a~~vI~A  162 (251)
T d2i0za1          84 ITFFENLGVKLKEEDHGRMFPVSNKAQSVVDALLTRLKDLGVKIRTNTPVETIEYE-NGQTKAVILQTGEVLETNHVVIA  162 (251)
T ss_dssp             HHHHHHTTCCEEECGGGEEEETTCCHHHHHHHHHHHHHHTTCEEECSCCEEEEEEE-TTEEEEEEETTCCEEECSCEEEC
T ss_pred             HHHHHhcCCccccccccceecccccHHHHHHHHHHHHHHcCCcccCCcEEEEEEEE-CCEEEEEEeCCCCeEecCeEEEc
Confidence                                           2345667889999999999999864 56777789999999999999999


Q ss_pred             cCCccCC---------chhhhcCCcccC---CCEEeC----CCC-CCCCCceEEeccccccCCccCCcccccchHHHHHH
Q 012165          284 IGAKPTV---------SPFERVGLNSSV---GGIQVD----GQF-RTRMPGIFAIGDVAAFPLKMYDRTARVEHVDHARQ  346 (469)
Q Consensus       284 ~G~~p~~---------~~~~~~gl~~~~---g~i~Vd----~~~-~t~~~~Vfa~GD~a~~~~~~~~~~~~~~~~~~A~~  346 (469)
                      +|-....         .+++..+.....   ..+.++    ..+ .+..|++|.+|++........|.     ....|..
T Consensus       163 tGg~S~p~~Gs~g~g~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~g~~l~~~~~~gG~-----~~~~a~~  237 (251)
T d2i0za1         163 VGGKSVPQTGSTGDGYAWAEKAGHTITELFGGGVSVKEINPKEMSSKFTNGLYFCGEVLDIHGYTGGY-----NITSALV  237 (251)
T ss_dssp             CCCSSSGGGSCSSHHHHHHHHTTCCEEEEEEEEECGGGEETTTTEESSSBTEEECGGGBSCBCCTTTH-----HHHHHHH
T ss_pred             cCCccccccCCCcccchhcccceeeeeeeeecccCccccCchhHHHhcCCCcEeeeeEEEccCCcchH-----HHHHHHH
Confidence            9975322         245666654321   111111    122 24679999999998644322222     2334666


Q ss_pred             HHHHHHHHH
Q 012165          347 SAQHCIKAL  355 (469)
Q Consensus       347 ~a~~~a~~i  355 (469)
                      .|+.++..+
T Consensus       238 ~G~~a~~~~  246 (251)
T d2i0za1         238 TGRIAGTTA  246 (251)
T ss_dssp             HHHHHHHHH
T ss_pred             HHHHHHHHH
Confidence            677666655

>d1xhca2 c.3.1.5 (A:104-225) NADH oxidase /nitrite reductase {Pyrococcus furiosus [TaxId: 2261]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: NADH oxidase /nitrite reductase
species: Pyrococcus furiosus [TaxId: 2261]

Probab=99.00  E-value=3.9e-10  Score=89.92  Aligned_cols=90  Identities=19%  Similarity=0.294  Sum_probs=69.7

Q ss_pred             CCcEEEEcCcHHHHHHHHHHHHcCCCCCcEEEEcCCCCCCCCCCCCcccccCCCCCCCCCCCCCccccCCCCCCCCHhHH
Q 012165           51 NREFVIVGGGNAAGYAARTFVEHGMADGRLCIVSKEAYAPYERPALTKGYLFPLDKKPARLPGFHTCVGSGGERQTPEWY  130 (469)
Q Consensus        51 ~~~vvIIGgG~AGl~aA~~L~~~g~~~~~V~vie~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  130 (469)
                      .++++|||||+.|+.+|..|++.|.   +|||+++.+...    ++..           .+           .....+++
T Consensus        32 ~~~vvIiGgG~iG~E~A~~l~~~g~---~Vtlv~~~~~l~----~~d~-----------~~-----------~~~~~~~l   82 (122)
T d1xhca2          32 SGEAIIIGGGFIGLELAGNLAEAGY---HVKLIHRGAMFL----GLDE-----------EL-----------SNMIKDML   82 (122)
T ss_dssp             HSEEEEEECSHHHHHHHHHHHHTTC---EEEEECSSSCCT----TCCH-----------HH-----------HHHHHHHH
T ss_pred             CCcEEEECCcHHHHHHHHHhhcccc---eEEEEecccccc----CCCH-----------HH-----------HHHHHHHH
Confidence            3689999999999999999999987   899999876531    0111           00           12345678


Q ss_pred             HHCCcEEEeCCcEEEEeCCCcEEEeCCCeEEEeccEEeccCC
Q 012165          131 KEKGIEMIYQDPVTSIDIEKQTLITNSGKLLKYGSLIVATGC  172 (469)
Q Consensus       131 ~~~~i~~~~~~~v~~id~~~~~v~~~~g~~~~yd~lVlAtG~  172 (469)
                      ++.|++++.++++.+++.+.  + +.+++.+++|.+|+|+|.
T Consensus        83 ~~~GV~~~~~~~v~~~~~~~--v-~~~~~~i~~D~vi~a~Gv  121 (122)
T d1xhca2          83 EETGVKFFLNSELLEANEEG--V-LTNSGFIEGKVKICAIGI  121 (122)
T ss_dssp             HHTTEEEECSCCEEEECSSE--E-EETTEEEECSCEEEECCE
T ss_pred             HHCCcEEEeCCEEEEEeCCE--E-EeCCCEEECCEEEEEEEe
Confidence            89999999999999887543  3 446778999999999994

>d2gv8a1 c.3.1.5 (A:3-180,A:288-444) Flavin-dependent monoxygenase SPBP16F5.08c {Schizosaccharomyces pombe [TaxId: 4896]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Flavin-dependent monoxygenase SPBP16F5.08c
species: Schizosaccharomyces pombe [TaxId: 4896]

Probab=99.00  E-value=2.3e-10  Score=108.38  Aligned_cols=41  Identities=12%  Similarity=0.244  Sum_probs=35.0

Q ss_pred             CCCCcEEEEcCcHHHHHHHHHHHHcCCCCCcEEEEcCCCCCC
Q 012165           49 NENREFVIVGGGNAAGYAARTFVEHGMADGRLCIVSKEAYAP   90 (469)
Q Consensus        49 ~~~~~vvIIGgG~AGl~aA~~L~~~g~~~~~V~vie~~~~~~   90 (469)
                      ..+++|+|||||+|||+||..|++.+. ..+|+|+|+.+..+
T Consensus         2 ~~~KrVaIIGaG~sGl~~A~~L~~~~~-~~~v~vfEk~~~iG   42 (335)
T d2gv8a1           2 PTIRKIAIIGAGPSGLVTAKALLAEKA-FDQVTLFERRGSPG   42 (335)
T ss_dssp             CSCCEEEEECCSHHHHHHHHHHHTTTC-CSEEEEECSSSSSS
T ss_pred             CCCCeEEEECcCHHHHHHHHHHHHhCC-CCCEEEEECCCCCC
Confidence            456899999999999999999998874 45899999997653

>d1nhpa2 c.3.1.5 (A:120-242) NADH peroxidase {Enterococcus faecalis [TaxId: 1351]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: NADH peroxidase
species: Enterococcus faecalis [TaxId: 1351]

Probab=98.98  E-value=5e-10  Score=89.36  Aligned_cols=94  Identities=18%  Similarity=0.252  Sum_probs=71.1

Q ss_pred             CCCCcEEEEcCcHHHHHHHHHHHHcCCCCCcEEEEcCCCCCCCCCCCCcccccCCCCCCCCCCCCCccccCCCCCCCCHh
Q 012165           49 NENREFVIVGGGNAAGYAARTFVEHGMADGRLCIVSKEAYAPYERPALTKGYLFPLDKKPARLPGFHTCVGSGGERQTPE  128 (469)
Q Consensus        49 ~~~~~vvIIGgG~AGl~aA~~L~~~g~~~~~V~vie~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  128 (469)
                      ...++|+|||||+.|+.+|..|++.|.   +||++|..+...      +. .+   +.   .+           .....+
T Consensus        28 ~~~k~vvViGgG~iG~E~A~~l~~~g~---~Vtlie~~~~~l------~~-~~---d~---~~-----------~~~~~~   80 (123)
T d1nhpa2          28 PEVNNVVVIGSGYIGIEAAEAFAKAGK---KVTVIDILDRPL------GV-YL---DK---EF-----------TDVLTE   80 (123)
T ss_dssp             TTCCEEEEECCSHHHHHHHHHHHHTTC---EEEEEESSSSTT------TT-TC---CH---HH-----------HHHHHH
T ss_pred             cCCCEEEEECChHHHHHHHHHhhccce---EEEEEEecCccc------cc-cc---ch---hh-----------HHHHHH
Confidence            345799999999999999999999987   899999876531      00 00   00   00           123456


Q ss_pred             HHHHCCcEEEeCCcEEEEeCCCc-EEEeCCCeEEEeccEEec
Q 012165          129 WYKEKGIEMIYQDPVTSIDIEKQ-TLITNSGKLLKYGSLIVA  169 (469)
Q Consensus       129 ~~~~~~i~~~~~~~v~~id~~~~-~v~~~~g~~~~yd~lVlA  169 (469)
                      ++++.|+++++++++.+++.+++ ...+.+|+++++|.+|+|
T Consensus        81 ~l~~~gv~~~~~~~v~~i~~~~~~~~v~~dg~~i~~D~vi~a  122 (123)
T d1nhpa2          81 EMEANNITIATGETVERYEGDGRVQKVVTDKNAYDADLVVVA  122 (123)
T ss_dssp             HHHTTTEEEEESCCEEEEECSSBCCEEEESSCEEECSEEEEC
T ss_pred             HhhcCCeEEEeCceEEEEEcCCCEEEEEeCCCEEECCEEEEE
Confidence            78889999999999999987654 334668888999999997

>d1qo8a2 c.3.1.4 (A:103-359,A:506-565) Flavocytochrome c3 (respiratory fumarate reductase) {Shewanella frigidimarina [TaxId: 56812]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: Succinate dehydrogenase/fumarate reductase flavoprotein N-terminal domain
domain: Flavocytochrome c3 (respiratory fumarate reductase)
species: Shewanella frigidimarina [TaxId: 56812]

Probab=98.96  E-value=1.9e-09  Score=101.03  Aligned_cols=51  Identities=16%  Similarity=0.292  Sum_probs=40.5

Q ss_pred             eHHHHHHcCcEEEcCCeEEEEEeCCCCcEEEEEcC--CCC--EEeCCEEEEccCC
Q 012165          236 YEQLYQQNGVKFVKGASIKNLEAGSDGRVAAVKLE--DGS--TIDADTIVIGIGA  286 (469)
Q Consensus       236 ~~~~l~~~gV~~~~~~~v~~i~~~~~~~v~~v~~~--~g~--~i~~D~vi~a~G~  286 (469)
                      +.+.+++.|+++++++.+.++..++++++.++...  +++  .+.++.||+|+|-
T Consensus       154 L~~~~~~~g~~i~~~~~v~~l~~~~~g~V~Gv~~~~~~~~~~~i~Ak~VVlAtGG  208 (317)
T d1qo8a2         154 LRKAAKEQGIDTRLNSRVVKLVVNDDHSVVGAVVHGKHTGYYMIGAKSVVLATGG  208 (317)
T ss_dssp             HHHHHHHTTCCEECSEEEEEEEECTTSBEEEEEEEETTTEEEEEEEEEEEECCCC
T ss_pred             HHHHhhhccceeeeccchhheeecccccceeeEeecccceEEEEeccceEEeccc
Confidence            34567789999999999999876778888877664  332  5889999999984

>d1onfa2 c.3.1.5 (A:154-270) Glutathione reductase {Plasmodium falciparum [TaxId: 5833]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Glutathione reductase
species: Plasmodium falciparum [TaxId: 5833]

Probab=98.95  E-value=1e-09  Score=86.58  Aligned_cols=91  Identities=16%  Similarity=0.229  Sum_probs=70.0

Q ss_pred             CCcEEEEcCcHHHHHHHHHHHHcCCCCCcEEEEcCCCCCCCCCCCCcccccCCCCCCCCCCCCCccccCCCCCCCCHhHH
Q 012165           51 NREFVIVGGGNAAGYAARTFVEHGMADGRLCIVSKEAYAPYERPALTKGYLFPLDKKPARLPGFHTCVGSGGERQTPEWY  130 (469)
Q Consensus        51 ~~~vvIIGgG~AGl~aA~~L~~~g~~~~~V~vie~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  130 (469)
                      .++|+|||||+.|+.+|..|++.|.   +|+|+++.+..           +...++   ++           .....+.+
T Consensus        22 p~~v~IiGgG~iG~E~A~~l~~~g~---~Vtlv~~~~~i-----------l~~~d~---~~-----------~~~~~~~l   73 (117)
T d1onfa2          22 SKKIGIVGSGYIAVELINVIKRLGI---DSYIFARGNRI-----------LRKFDE---SV-----------INVLENDM   73 (117)
T ss_dssp             CSEEEEECCSHHHHHHHHHHHTTTC---EEEEECSSSSS-----------CTTSCH---HH-----------HHHHHHHH
T ss_pred             CCEEEEECCchHHHHHHHHHHhccc---cceeeehhccc-----------cccccH---HH-----------HHHHHHHH
Confidence            5789999999999999999999886   89999987653           100000   00           12345678


Q ss_pred             HHCCcEEEeCCcEEEEeCCC---cEEEeCCCeEE-EeccEEec
Q 012165          131 KEKGIEMIYQDPVTSIDIEK---QTLITNSGKLL-KYGSLIVA  169 (469)
Q Consensus       131 ~~~~i~~~~~~~v~~id~~~---~~v~~~~g~~~-~yd~lVlA  169 (469)
                      ++.|+++++++++++++...   .++++++|+.+ .||.|++|
T Consensus        74 ~~~gV~i~~~~~v~~i~~~~~~~~~v~~~~G~~~~~~D~Vi~A  116 (117)
T d1onfa2          74 KKNNINIVTFADVVEIKKVSDKNLSIHLSDGRIYEHFDHVIYC  116 (117)
T ss_dssp             HHTTCEEECSCCEEEEEESSTTCEEEEETTSCEEEEESEEEEC
T ss_pred             HhCCCEEEECCEEEEEEEcCCCeEEEEECCCCEEEeCCEEEEe
Confidence            88999999999999997433   36889999877 58999998

>d2bs2a2 c.3.1.4 (A:1-250,A:372-457) Fumarate reductase {Wolinella succinogenes [TaxId: 844]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: Succinate dehydrogenase/fumarate reductase flavoprotein N-terminal domain
domain: Fumarate reductase
species: Wolinella succinogenes [TaxId: 844]

Probab=98.94  E-value=3.1e-08  Score=93.27  Aligned_cols=117  Identities=18%  Similarity=0.260  Sum_probs=74.5

Q ss_pred             HHHHHcCcEEEcCCeEEEEEeCCCCcEEEEEc---CCCC--EEeCCEEEEccCCccCC---------------chhhhcC
Q 012165          238 QLYQQNGVKFVKGASIKNLEAGSDGRVAAVKL---EDGS--TIDADTIVIGIGAKPTV---------------SPFERVG  297 (469)
Q Consensus       238 ~~l~~~gV~~~~~~~v~~i~~~~~~~v~~v~~---~~g~--~i~~D~vi~a~G~~p~~---------------~~~~~~g  297 (469)
                      +..++.|++++.++.+.++..+ ++++.++..   .+|+  .+.++.||+|||--...               ......|
T Consensus       166 ~~~~~~gv~i~~~~~~~~li~~-~~~v~g~~~~~~~~g~~~~i~Ak~VvlATGG~~~~~~~t~~~~~~tGdg~~~~~~~G  244 (336)
T d2bs2a2         166 NECLKLGVSIQDRKEAIALIHQ-DGKCYGAVVRDLVTGDIIAYVAKGTLIATGGYGRIYKNTTNAVVCEGTGTAIALETG  244 (336)
T ss_dssp             HHHHHHTCEEECSEEEEEEEEE-TTEEEEEEEEETTTCCEEEEECSEEEECCCCCGGGSSSBSSCTTCSCHHHHHHHTTS
T ss_pred             HHHHhccccccceeeeeecccc-cccccceeEEeccCCcEEEEecCeEEEeccccccccccccccccccchhhhhhhhhh
Confidence            4567789999999999888754 566555544   4664  57899999999843210               0122334


Q ss_pred             C-cc-cCCCEEeCCCCCCCCCceEEeccccccCCccCCcccccchHHHHHHHHHHHHHHHh
Q 012165          298 L-NS-SVGGIQVDGQFRTRMPGIFAIGDVAAFPLKMYDRTARVEHVDHARQSAQHCIKALL  356 (469)
Q Consensus       298 l-~~-~~g~i~Vd~~~~t~~~~Vfa~GD~a~~~~~~~~~~~~~~~~~~A~~~a~~~a~~i~  356 (469)
                      . .. +-++|.+|.+++|+.|++|++||++........+.. -..+..+...+...++..+
T Consensus       245 ~~~l~~~~~iq~~~~~~t~~~gl~a~G~~~~~~~~~~~~~~-~~~~~e~~~~~~~~ge~~~  304 (336)
T d2bs2a2         245 IAQLGNMGGIRTDYRGEAKLKGLFSAGEAACWDMHGFNRLG-GNSVSEAVVAGMIVGEYFA  304 (336)
T ss_dssp             SSCEECCCEEECCTTSBCSSBTEEECGGGEECCSSTTCCCT-THHHHHHHHHHHHHHHHHH
T ss_pred             hhhhccccceeechhhcccCCcceeccccccccccccccch-hhccchhhhhcchhHHHHH
Confidence            3 22 457899999999999999999998765432222111 1234445555555555544

>d2cula1 c.3.1.7 (A:2-231) GidA-related protein TTHA1897 {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: GidA-like
domain: GidA-related protein TTHA1897
species: Thermus thermophilus [TaxId: 274]

Probab=98.91  E-value=4.9e-10  Score=98.40  Aligned_cols=114  Identities=14%  Similarity=0.098  Sum_probs=67.6

Q ss_pred             CCcEEEEcCcHHHHHHHHHHHHcCCCCCcEEEEcCCCCCCCCCCCCcccccCCCCCC----CCCCCCCccccCCCCCCCC
Q 012165           51 NREFVIVGGGNAAGYAARTFVEHGMADGRLCIVSKEAYAPYERPALTKGYLFPLDKK----PARLPGFHTCVGSGGERQT  126 (469)
Q Consensus        51 ~~~vvIIGgG~AGl~aA~~L~~~g~~~~~V~vie~~~~~~~~~~~l~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~  126 (469)
                      .|||+|||||+||++||.+++|.|.   ++.||+.+.......+.-+..........    ...-+.....     ....
T Consensus         2 ~YDVIVIGgG~AG~eAA~~aAR~G~---ktllit~~~~~ig~~~cnp~~gg~~kg~l~reid~kG~av~a~-----raQ~   73 (230)
T d2cula1           2 AYQVLIVGAGFSGAETAFWLAQKGV---RVGLLTQSLDAVMMPFLPPKPPFPPGSLLERAYDPKDERVWAF-----HARA   73 (230)
T ss_dssp             CCSEEEECCSHHHHHHHHHHHHTTC---CEEEEESCGGGTTCCSSCCCSCCCTTCHHHHHCCTTCCCHHHH-----HHHH
T ss_pred             CCcEEEECcCHHHHHHHHHHHHCCC---cEEEEEeccchhcccccCCccccCCCcceeeeeeccchhhhhH-----HHHH
Confidence            5899999999999999999999987   79999876322111000000000000000    0000000000     0000


Q ss_pred             -HhHHHHCCcEEEeCCcEEEEeCCCc---EEEeCCCeEEEeccEEeccCCC
Q 012165          127 -PEWYKEKGIEMIYQDPVTSIDIEKQ---TLITNSGKLLKYGSLIVATGCT  173 (469)
Q Consensus       127 -~~~~~~~~i~~~~~~~v~~id~~~~---~v~~~~g~~~~yd~lVlAtG~~  173 (469)
                       .......+++++.+ +|..+..++.   .|.+.+|.++.++.||||||..
T Consensus        74 k~~l~~~~nL~i~q~-~V~dli~e~~~v~gV~t~~G~~~~AkaVILtTGTF  123 (230)
T d2cula1          74 KYLLEGLRPLHLFQA-TATGLLLEGNRVVGVRTWEGPPARGEKVVLAVGSF  123 (230)
T ss_dssp             HHHHHTCTTEEEEEC-CEEEEEEETTEEEEEEETTSCCEECSEEEECCTTC
T ss_pred             HHHHhhhcCHHHHhc-cceeeEecccceeeEEeccccEEEEeEEEEccCcc
Confidence             11123458888875 7887765554   4678999999999999999975

>d1mo9a2 c.3.1.5 (A:193-313) NADH-dependent 2-ketopropyl coenzyme M oxidoreductase/carboxylase {Xanthobacter sp., py2 [TaxId: 35809]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: NADH-dependent 2-ketopropyl coenzyme M oxidoreductase/carboxylase
species: Xanthobacter sp., py2 [TaxId: 35809]

Probab=98.90  E-value=1.6e-09  Score=86.24  Aligned_cols=93  Identities=19%  Similarity=0.257  Sum_probs=69.4

Q ss_pred             CCcEEEEcCcHHHHHHHHHHHHcCCCCCcEEEEcCCCCCCCCCCCCcccccCCCCCCCCCCCCCccccCCCCCCCCHhHH
Q 012165           51 NREFVIVGGGNAAGYAARTFVEHGMADGRLCIVSKEAYAPYERPALTKGYLFPLDKKPARLPGFHTCVGSGGERQTPEWY  130 (469)
Q Consensus        51 ~~~vvIIGgG~AGl~aA~~L~~~g~~~~~V~vie~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  130 (469)
                      .++++|||||+.|+..|..|++.|.   ++++++..+...   |.+..        ..              .....+.+
T Consensus        22 ~~~vvVvGgG~ig~E~A~~l~~~g~---~vt~i~~~~~~l---~~~d~--------~~--------------~~~~~~~l   73 (121)
T d1mo9a2          22 GSTVVVVGGSKTAVEYGCFFNATGR---RTVMLVRTEPLK---LIKDN--------ET--------------RAYVLDRM   73 (121)
T ss_dssp             CSEEEEECCSHHHHHHHHHHHHTTC---EEEEECSSCTTT---TCCSH--------HH--------------HHHHHHHH
T ss_pred             CCEEEEECCCHHHHHHHHHHHhcch---hheEeeccchhh---ccccc--------ch--------------hhhhhhhh
Confidence            4799999999999999999999976   899999876431   11110        00              12345778


Q ss_pred             HHCCcEEEeCCcEEEEeCCCc----EE---EeCCCeEEEeccEEeccC
Q 012165          131 KEKGIEMIYQDPVTSIDIEKQ----TL---ITNSGKLLKYGSLIVATG  171 (469)
Q Consensus       131 ~~~~i~~~~~~~v~~id~~~~----~v---~~~~g~~~~yd~lVlAtG  171 (469)
                      ++.++++++++++..++....    .+   ...+++++++|.+++|+|
T Consensus        74 ~~~gI~v~~~~~v~~i~~~~~~~~~~~~~~~~~~~~~i~~D~Vi~a~G  121 (121)
T d1mo9a2          74 KEQGMEIISGSNVTRIEEDANGRVQAVVAMTPNGEMRIETDFVFLGLG  121 (121)
T ss_dssp             HHTTCEEESSCEEEEEEECTTSBEEEEEEEETTEEEEEECSCEEECCC
T ss_pred             hccccEEEcCCEEEEEEecCCceEEEEEEEeCCCCEEEEcCEEEEEEC
Confidence            899999999999999976542    11   234556799999999998

>d2v5za1 c.3.1.2 (A:6-289,A:402-500) Monoamine oxidase B {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD-linked reductases, N-terminal domain
domain: Monoamine oxidase B
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.90  E-value=5.2e-10  Score=106.36  Aligned_cols=112  Identities=13%  Similarity=0.129  Sum_probs=68.5

Q ss_pred             eHHHHHHcCcEEEcCCeEEEEEeCCCCcEEEEEcCCCCEEeCCEEEEccCCcc--------CCc-hhhhcCCc-ccCCCE
Q 012165          236 YEQLYQQNGVKFVKGASIKNLEAGSDGRVAAVKLEDGSTIDADTIVIGIGAKP--------TVS-PFERVGLN-SSVGGI  305 (469)
Q Consensus       236 ~~~~l~~~gV~~~~~~~v~~i~~~~~~~v~~v~~~~g~~i~~D~vi~a~G~~p--------~~~-~~~~~gl~-~~~g~i  305 (469)
                      ...++++.|+++++++.|++|..+ ++.+ .|++.||+++++|.||++++..-        ..+ ...+..-. ...+..
T Consensus       213 ~~~l~~~~g~~i~~~~~v~~I~~~-~~~v-~v~~~~g~~~~ad~vI~a~p~~~~~~~~~~p~l~~~~~~~~~~~~~~~~~  290 (383)
T d2v5za1         213 SERIMDLLGDRVKLERPVIYIDQT-RENV-LVETLNHEMYEAKYVISAIPPTLGMKIHFNPPLPMMRNQMITRVFPPGIL  290 (383)
T ss_dssp             HHHHHHHHGGGEEESCCEEEEECS-SSSE-EEEETTSCEEEESEEEECSCGGGGGGSEEESCCCHHHHHHTTSCCCTTHH
T ss_pred             HHHHHHHcCCeEEecCcceEEEec-CCeE-EEEECCCCEEECCEEEECCCHHHHhhCccCCCCCHHHHHHHHHhccCCcc
Confidence            355667889999999999999865 3444 58899999999999999986421        111 00010000 001111


Q ss_pred             -EeCCCCCCCCCceEEeccccccCCccCCcccccchHHHHHHHHHHHHHHHhc
Q 012165          306 -QVDGQFRTRMPGIFAIGDVAAFPLKMYDRTARVEHVDHARQSAQHCIKALLS  357 (469)
Q Consensus       306 -~Vd~~~~t~~~~Vfa~GD~a~~~~~~~~~~~~~~~~~~A~~~a~~~a~~i~~  357 (469)
                       .....+.....+|+.+|+......        ...+..|+.+|+.+|..++.
T Consensus       291 ~~~~~~~~~~~~~~~~~G~~~~~~~--------~g~~~ga~~~g~~~a~~i~~  335 (383)
T d2v5za1         291 TQYGRVLRQPVDRIYFAGTETATHW--------SGYMEGAVEAGERAAREILH  335 (383)
T ss_dssp             HHHGGGTTCCBTTEEECSGGGCSSS--------TTSHHHHHHHHHHHHHHHHH
T ss_pred             chhhhhhcCCcCceEeccccccccC--------CcchHHHHHHHHHHHHHHHH
Confidence             112223445567999997654322        12445578888888887753

>d1seza1 c.3.1.2 (A:13-329,A:442-497) Protoporphyrinogen oxidase {Tobacco (Nicotiana tabacum) [TaxId: 4097]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD-linked reductases, N-terminal domain
domain: Protoporphyrinogen oxidase
species: Tobacco (Nicotiana tabacum) [TaxId: 4097]

Probab=98.89  E-value=3.4e-10  Score=105.56  Aligned_cols=103  Identities=14%  Similarity=0.138  Sum_probs=62.4

Q ss_pred             cCcEEEcCCeEEEEEeCCCCc----EEEEEc-----CCCCEEeCCEEEEccCCccCCc-------------hhhhc-CCc
Q 012165          243 NGVKFVKGASIKNLEAGSDGR----VAAVKL-----EDGSTIDADTIVIGIGAKPTVS-------------PFERV-GLN  299 (469)
Q Consensus       243 ~gV~~~~~~~v~~i~~~~~~~----v~~v~~-----~~g~~i~~D~vi~a~G~~p~~~-------------~~~~~-gl~  299 (469)
                      .+.++++++.|++|+...++.    ...+..     .+++.+++|.||++++...-..             .+... +..
T Consensus       242 ~~~~i~~~~~V~~i~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~D~Vi~a~p~~~l~~l~~~~~~~~~~~~~~~~~~~~~  321 (373)
T d1seza1         242 REDELRLNSRVLELSCSCTEDSAIDSWSIISASPHKRQSEEESFDAVIMTAPLCDVKSMKIAKRGNPFLLNFIPEVYGHN  321 (373)
T ss_dssp             CTTTEETTCCEEEEEEECSSSSSSCEEEEEEBCSSSSCBCCCEESEEEECSCHHHHHTSEEESSSSBCCCTTSCCCCCTT
T ss_pred             ccceEecCCEEEEEEEeCCcccccccceEEecccCCCCceEEECCEEEECCchHHhhhcccccCCCccchhhhccccccC
Confidence            367899999999997643321    112222     2346789999999987432100             01110 000


Q ss_pred             ccCCCEEeCCCCCCCCCceEEeccccccCCccCCcccccchHHHHHHHHHHHHHHHhc
Q 012165          300 SSVGGIQVDGQFRTRMPGIFAIGDVAAFPLKMYDRTARVEHVDHARQSAQHCIKALLS  357 (469)
Q Consensus       300 ~~~g~i~Vd~~~~t~~~~Vfa~GD~a~~~~~~~~~~~~~~~~~~A~~~a~~~a~~i~~  357 (469)
                      . .+.+.+++.++|+.|+||++||+...+           .+..|+.+|..+|+.|+.
T Consensus       322 ~-~~~~~~~~~~~t~~pglf~aGd~~~g~-----------~~~~A~~~G~~aA~~i~~  367 (373)
T d1seza1         322 Y-DSVLDAIDKMEKNLPGLFYAGNHRGGL-----------SVGKALSSGCNAADLVIS  367 (373)
T ss_dssp             H-HHHHHHHHHHHHHSTTEEECCSSSSCS-----------SHHHHHHHHHHHHHHHHH
T ss_pred             C-CcEeecccccCCCCCCEEEEecCCCch-----------hHHHHHHHHHHHHHHHHH
Confidence            0 012233455778899999999998643           345678888888887764

>d1ryia1 c.3.1.2 (A:1-218,A:307-364) Glycine oxidase ThiO {Bacillus sp. [TaxId: 1409]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD-linked reductases, N-terminal domain
domain: Glycine oxidase ThiO
species: Bacillus sp. [TaxId: 1409]

Probab=98.88  E-value=8.1e-10  Score=101.28  Aligned_cols=43  Identities=26%  Similarity=0.319  Sum_probs=35.9

Q ss_pred             HHHCCcEEEeCCcEEEEeCCCc--EEEeCCCeEEEeccEEeccCCC
Q 012165          130 YKEKGIEMIYQDPVTSIDIEKQ--TLITNSGKLLKYGSLIVATGCT  173 (469)
Q Consensus       130 ~~~~~i~~~~~~~v~~id~~~~--~v~~~~g~~~~yd~lVlAtG~~  173 (469)
                      +++.|++++.+++|+.|+.+++  .|.+++| ++.+|+||+|+|..
T Consensus       161 ~~~~Gv~i~~~~~V~~i~~~~~~~~V~t~~g-~i~a~~vV~AaG~~  205 (276)
T d1ryia1         161 AKMLGAEIFEHTPVLHVERDGEALFIKTPSG-DVWANHVVVASGVW  205 (276)
T ss_dssp             HHHTTCEEETTCCCCEEECSSSSEEEEETTE-EEEEEEEEECCGGG
T ss_pred             HHHcCCEEecceEEEeEEeecceEEEecCCe-EEEcCEEEECCCcc
Confidence            4678999999999999987654  5677776 58999999999975

>d1cjca2 c.4.1.1 (A:6-106,A:332-460) Adrenodoxin reductase of mitochondrial p450 systems {Cow (Bos taurus) [TaxId: 9913]}

class: Alpha and beta proteins (a/b)
fold: Nucleotide-binding domain
superfamily: Nucleotide-binding domain
family: N-terminal domain of adrenodoxin reductase-like
domain: Adrenodoxin reductase of mitochondrial p450 systems
species: Cow (Bos taurus) [TaxId: 9913]

Probab=98.88  E-value=1.6e-10  Score=103.37  Aligned_cols=108  Identities=13%  Similarity=0.123  Sum_probs=65.6

Q ss_pred             CcEEEEcCcHHHHHHHHHHHHcCCCCCcEEEEcCCCCCCCCCCCCcccccCCCCCC-CCCCCCCccccCCCCCCCCHhHH
Q 012165           52 REFVIVGGGNAAGYAARTFVEHGMADGRLCIVSKEAYAPYERPALTKGYLFPLDKK-PARLPGFHTCVGSGGERQTPEWY  130 (469)
Q Consensus        52 ~~vvIIGgG~AGl~aA~~L~~~g~~~~~V~vie~~~~~~~~~~~l~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~  130 (469)
                      ++|+|||||||||+||.+|++.+. ..+|+|+|+.+.++..   +.  +..+.... ...+           ......++
T Consensus         2 ~kv~iIGaGpaGl~aA~~L~~~~~-~~~V~v~e~~~~~gG~---~~--~~~~~~~~~~~~~-----------~~~~~~~~   64 (230)
T d1cjca2           2 PQICVVGSGPAGFYTAQHLLKHHS-RAHVDIYEKQLVPFGL---VR--FGVAPDHPEVKNV-----------INTFTQTA   64 (230)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHHCS-SCEEEEECSSSSSCTH---HH--HTSCTTCGGGGGH-----------HHHHHHHH
T ss_pred             CeEEEECccHHHHHHHHHHHhcCC-CCeEEEEeCCCCCCce---eh--hhccccccccccc-----------hhhhhhhh
Confidence            589999999999999999999864 5689999998765310   00  11110000 0000           11234566


Q ss_pred             HHCCcEEEeCCcEEEEeCCCcEEEeCCCeEEEeccEEeccCCCCCcCCCCCCC
Q 012165          131 KEKGIEMIYQDPVTSIDIEKQTLITNSGKLLKYGSLIVATGCTASRFPEKIGG  183 (469)
Q Consensus       131 ~~~~i~~~~~~~v~~id~~~~~v~~~~g~~~~yd~lVlAtG~~~~~~~~~~g~  183 (469)
                      .+.+++++.++.|.   .+   +...+ -.-.||.+++|||+.+...+..++.
T Consensus        65 ~~~~~~~~~~~~v~---~~---~~~~~-l~~~~d~v~~a~Ga~~~~~~~~~~~  110 (230)
T d1cjca2          65 RSDRCAFYGNVEVG---RD---VTVQE-LQDAYHAVVLSYGAEDKSRPIDPSV  110 (230)
T ss_dssp             TSTTEEEEBSCCBT---TT---BCHHH-HHHHSSEEEECCCCCEECCCCCTTS
T ss_pred             hcCCeeEEeeEEeC---cc---ccHHH-HHhhhceEEEEeecccccccccccc
Confidence            77899988876551   11   11100 0126899999999986555544443

>d2gmha1 c.3.1.2 (A:4-236,A:336-482) Electron transfer flavoprotein-ubiquinone oxidoreductase, EFT-QO {Pig (Sus scrofa) [TaxId: 9823]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD-linked reductases, N-terminal domain
domain: Electron transfer flavoprotein-ubiquinone oxidoreductase, EFT-QO
species: Pig (Sus scrofa) [TaxId: 9823]

Probab=98.87  E-value=3.4e-08  Score=94.60  Aligned_cols=112  Identities=19%  Similarity=0.281  Sum_probs=65.8

Q ss_pred             HHHHHcCcEEEcCCeEEEEEeCCCCcEEEEEcCC---------------CCEEeCCEEEEccCCccCC--chhhhcCCcc
Q 012165          238 QLYQQNGVKFVKGASIKNLEAGSDGRVAAVKLED---------------GSTIDADTIVIGIGAKPTV--SPFERVGLNS  300 (469)
Q Consensus       238 ~~l~~~gV~~~~~~~v~~i~~~~~~~v~~v~~~~---------------g~~i~~D~vi~a~G~~p~~--~~~~~~gl~~  300 (469)
                      +..+..|+++..+..+.++...+++.+..+...+               +....++..+++.|.+...  .+++...+..
T Consensus       149 ~~Ae~~g~~~~~~~~~~~~l~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~G~~G~l~k~li~~~~l~~  228 (380)
T d2gmha1         149 EQAEALGVEVYPGYAAAEILFHEDGSVKGIATNDVGIQKDGAPKTTFERGLELHAKVTIFAEGCHGHLAKQLYKKFDLRA  228 (380)
T ss_dssp             HHHHHTTCEEETTCCEEEEEECTTSSEEEEEECCEEECTTSCEEEEEECCCEEECSEEEECCCTTCHHHHHHHHHTTTTT
T ss_pred             HHHhhccceeeeecceeeeeeccCCceeecccccccccccccccccccccccccccEEEEeeeCCCcchHHHHhhhhhcc
Confidence            4456778888888888877765566554443321               2346688889998876532  1233322221


Q ss_pred             c---CCCEEeCCCCCCCCCceEEeccccccCCccCCcccccchHHHHHHHHHHHHHHHh
Q 012165          301 S---VGGIQVDGQFRTRMPGIFAIGDVAAFPLKMYDRTARVEHVDHARQSAQHCIKALL  356 (469)
Q Consensus       301 ~---~g~i~Vd~~~~t~~~~Vfa~GD~a~~~~~~~~~~~~~~~~~~A~~~a~~~a~~i~  356 (469)
                      .   .+++.  .--+...|++..+||++++-++..+     +-+..|+..|+.||+.+.
T Consensus       229 ~~~~~~G~~--sip~l~~~G~lLVGDAAG~vnP~~g-----~GI~~Am~SG~lAAeai~  280 (380)
T d2gmha1         229 NCEPQGGFQ--SIPKLTFPGGLLIGCSPGFMNVPKI-----KGTHTAMKSGTLAAESIF  280 (380)
T ss_dssp             TSCCCCGGG--GCCCCEETTEEECTTTTCCCBTTTT-----BCHHHHHHHHHHHHHHHH
T ss_pred             ccccccccc--cccccccCCeeEEeccccccchhhc-----CCeeeeeccHHHHHHHHH
Confidence            1   11211  0112346899999999997654332     245567777777777764

>d1onfa1 c.3.1.5 (A:1-153,A:271-376) Glutathione reductase {Plasmodium falciparum [TaxId: 5833]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Glutathione reductase
species: Plasmodium falciparum [TaxId: 5833]

Probab=98.86  E-value=3.3e-09  Score=96.40  Aligned_cols=119  Identities=24%  Similarity=0.403  Sum_probs=79.1

Q ss_pred             eEEEEcCChHHHHHHHHHHhCCCeEe------------------------------------------------------
Q 012165          209 KVVVVGGGYIGMEVAAAAVGWKLDTT------------------------------------------------------  234 (469)
Q Consensus       209 ~vvVvG~G~~g~e~A~~l~~~g~~v~------------------------------------------------------  234 (469)
                      .++|||+|+.|+.+|..++++|.+|.                                                      
T Consensus         3 DviVIG~G~aG~~aA~~aa~~G~~V~liE~~~~GGtc~n~gciPsK~l~~~~~~~~~~~~~~~~G~~~~~~~~~~~~~~~   82 (259)
T d1onfa1           3 DLIVIGGGSGGMAAARRAARHNAKVALVEKSRLGGTCVNVGCVPKKIMFNAASVHDILENSRHYGFDTKFSFNLPLLVER   82 (259)
T ss_dssp             SEEEECCSHHHHHHHHHHHHTTCCEEEEESSSTTHHHHHTSHHHHHHHHHHHHHHHHHHHGGGGTCCCCCCCCHHHHHHH
T ss_pred             eEEEECCCHHHHHHHHHHHHCCCeEEEEecCCCCCeEEeeCCcchHHHHhhhhcccchhccccccccchhhhhhhhHHhh
Confidence            47899999999999999999999886                                                      


Q ss_pred             ----------eeHHHHHHcCcEEEcCCe-EE-----EEEeCCCCcEEEEEcCCCCEEeCCEEEEccCCccC-----Cch-
Q 012165          235 ----------RYEQLYQQNGVKFVKGAS-IK-----NLEAGSDGRVAAVKLEDGSTIDADTIVIGIGAKPT-----VSP-  292 (469)
Q Consensus       235 ----------~~~~~l~~~gV~~~~~~~-v~-----~i~~~~~~~v~~v~~~~g~~i~~D~vi~a~G~~p~-----~~~-  292 (469)
                                .+...+++.||+++.+.- ..     .+...++.........+++.+.+|.+|+|||.+|.     .+. 
T Consensus        83 ~~~~i~~~~~~~~~~l~~~gV~vi~G~a~f~~~~~v~v~~~~~~~~~~~~~~~~~~i~a~~iiIATGs~P~~~~~~~~~~  162 (259)
T d1onfa1          83 RDKYIQRLNNIYRQNLSKDKVDLYEGTASFLSENRILIKGTKDNNNKDNGPLNEEILEGRNILIAVGNKPVGRSPDTENL  162 (259)
T ss_dssp             HHHHHHHHHHHHHHHHHHTTCEEEESCCCCC--------------------------CBSSEEECCCCCBCCBCCTTTTS
T ss_pred             hheeeeccccchhhhcccccceEEeeecccccccccccccceeccccccCccceEEEeeeeEEEecCCCCcccccccccc
Confidence                      235667788999987631 11     11100011000111123457999999999999983     332 


Q ss_pred             -hhhcCCcccCCCEEeCCCCCCCCCceEEecccccc
Q 012165          293 -FERVGLNSSVGGIQVDGQFRTRMPGIFAIGDVAAF  327 (469)
Q Consensus       293 -~~~~gl~~~~g~i~Vd~~~~t~~~~Vfa~GD~a~~  327 (469)
                       +++.++..+++.+.+|+..+|.+.++|++||++..
T Consensus       163 ~l~~~~i~ts~~~~~~d~~~~t~Vig~gaiGdv~~~  198 (259)
T d1onfa1         163 KLEKLNVETNNNYIVVDENQRTSVNNIYAVGDCCMV  198 (259)
T ss_dssp             SCTTTTCCBSSSCEEECTTCBCSSSSEEECSTTEEE
T ss_pred             ccccceeeecccccccccCCceeEeeEEEEEEeeeh
Confidence             44556656678899999999999999999999864

>d1lqta2 c.4.1.1 (A:2-108,A:325-456) Ferredoxin:NADP reductase FprA {Mycobacterium tuberculosis [TaxId: 1773]}

class: Alpha and beta proteins (a/b)
fold: Nucleotide-binding domain
superfamily: Nucleotide-binding domain
family: N-terminal domain of adrenodoxin reductase-like
domain: Ferredoxin:NADP reductase FprA
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=98.86  E-value=1.3e-11  Score=111.10  Aligned_cols=154  Identities=12%  Similarity=0.102  Sum_probs=85.0

Q ss_pred             CCcEEEEcCcHHHHHHHHHHHHcCCC----CCcEEEEcCCCCCCCCCCCCcccccCCCCCCCCCCCCCccccCCCCCCCC
Q 012165           51 NREFVIVGGGNAAGYAARTFVEHGMA----DGRLCIVSKEAYAPYERPALTKGYLFPLDKKPARLPGFHTCVGSGGERQT  126 (469)
Q Consensus        51 ~~~vvIIGgG~AGl~aA~~L~~~g~~----~~~V~vie~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  126 (469)
                      +++|+|||+|||||+||.+|+++|+.    ..+|+|+|+.+.++..    ......+.......+           ....
T Consensus         2 p~~VaVIGaGpaGL~aA~~L~~~G~~~~~~~~~V~v~E~~~~~GG~----~~~gi~p~~~~~~~~-----------~~~~   66 (239)
T d1lqta2           2 PYYIAIVGSGPSAFFAAASLLKAADTTEDLDMAVDMLEMLPTPWGL----VRSGVAPDHPKIKSI-----------SKQF   66 (239)
T ss_dssp             CEEEEEECCSHHHHHHHHHHHHHHHHSTTCCEEEEEEESSSSCSTH----HHHTSCTTCTGGGGG-----------HHHH
T ss_pred             CcEEEEECcCHHHHHHHHHHHHcCCccccCCCceEEEecCCCCCCe----eeeccCcccccchhh-----------hhhh
Confidence            46999999999999999999999841    2479999998875421    000000111111110           1122


Q ss_pred             HhHHHHCCcEEEeCCcEEEEeCCCcEEEeCCCeEEEeccEEeccCCCCCcCCCCCCCCcCcE----EEecCHHH---HHH
Q 012165          127 PEWYKEKGIEMIYQDPVTSIDIEKQTLITNSGKLLKYGSLIVATGCTASRFPEKIGGYLPGV----HYIRDVAD---ADA  199 (469)
Q Consensus       127 ~~~~~~~~i~~~~~~~v~~id~~~~~v~~~~g~~~~yd~lVlAtG~~~~~~~~~~g~~~~~v----~~~~~~~~---~~~  199 (469)
                      ..++.+.+++++.++.+.      ..+..+ .-...||++++|||+.+..+. .++...+..    ..+.....   ...
T Consensus        67 ~~~~~~~g~~~~~~~~v~------~~~~~~-~~~~~~~~v~~atGa~~~~~~-~~g~~~~~~~~~~~~~~~~~~~~~~~~  138 (239)
T d1lqta2          67 EKTAEDPRFRFFGNVVVG------EHVQPG-ELSERYDAVIYAVGAQSRGVP-TPGLPFDDQSGTIPNVGGRINGSPNEY  138 (239)
T ss_dssp             HHHHTSTTEEEEESCCBT------TTBCHH-HHHHHSSEEEECCCCCEECCC-CTTSCCBTTTTBCCEETTEETTCSSEE
T ss_pred             hhhhccCCceEEEEEEec------cccchh-hhhccccceeeecCCCccccc-cccccccccccchhhhhhhhccccccc
Confidence            345567789999886541      111111 112369999999998865433 223221111    01100000   000


Q ss_pred             HHHhhhcCCeEEEEcCChHHHHHHHHHH
Q 012165          200 LISSLEKAKKVVVVGGGYIGMEVAAAAV  227 (469)
Q Consensus       200 ~~~~~~~~~~vvVvG~G~~g~e~A~~l~  227 (469)
                      .......+++++|+|+|..+++++..+.
T Consensus       139 ~~~~~~~g~~~vv~g~g~~a~d~a~~~v  166 (239)
T d1lqta2         139 VVGWIKRGPTGVIGTNKKDAQDTVDTLI  166 (239)
T ss_dssp             ECTHHHHCSCSCTTHHHHHHHHHHHHHH
T ss_pred             cceeecCCCEEEEeCCCchHHHHHHHHH
Confidence            0001234678888899999999887543

>d1trba1 c.3.1.5 (A:1-118,A:245-316) Thioredoxin reductase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Thioredoxin reductase
species: Escherichia coli [TaxId: 562]

Probab=98.85  E-value=1e-09  Score=94.81  Aligned_cols=111  Identities=18%  Similarity=0.227  Sum_probs=69.8

Q ss_pred             CCCcEEEEcCcHHHHHHHHHHHHcCCCCCcEEEEcCCCCCCCCCCCCcccccCCCCCCCCCCCCCcc-ccCCCCCCCCHh
Q 012165           50 ENREFVIVGGGNAAGYAARTFVEHGMADGRLCIVSKEAYAPYERPALTKGYLFPLDKKPARLPGFHT-CVGSGGERQTPE  128 (469)
Q Consensus        50 ~~~~vvIIGgG~AGl~aA~~L~~~g~~~~~V~vie~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~  128 (469)
                      +++||+||||||+||+||.+|++.|.   +++|||+.......       ..   .....+++.+.. ..+.........
T Consensus         4 k~~dVvIIGGGpaGl~AA~~~ar~g~---~v~iie~~~~~g~~-------~~---~~~i~~~~~~~~~~~~~~~~~~~~~   70 (190)
T d1trba1           4 KHSKLLILGSGPAGYTAAVYAARANL---QPVLITGMEKGGQL-------TT---TTEVENWPGDPNDLTGPLLMERMHE   70 (190)
T ss_dssp             EEEEEEEECCSHHHHHHHHHHHTTTC---CCEEECCSSTTGGG-------GG---CSBCCCSTTCCSSCBHHHHHHHHHH
T ss_pred             CCCcEEEECCCHHHHHHHHHHHHcCC---ceEEEEeecccccc-------cc---cchhhhhhccccccchHHHHHHHHH
Confidence            45799999999999999999999987   79999976542110       00   001111111110 000001112233


Q ss_pred             HHHHCCcEEEeCCcEEEEeCCCc--EEEeCCCeEEEeccEEeccCCCCC
Q 012165          129 WYKEKGIEMIYQDPVTSIDIEKQ--TLITNSGKLLKYGSLIVATGCTAS  175 (469)
Q Consensus       129 ~~~~~~i~~~~~~~v~~id~~~~--~v~~~~g~~~~yd~lVlAtG~~~~  175 (469)
                      ...+.++.+..+ +|+.++....  .++. ....+..+.+++++|..++
T Consensus        71 ~~~~~~~~~~~~-~V~~~~~~~~~~~v~~-~~~~~~~~~viva~G~~~~  117 (190)
T d1trba1          71 HATKFETEIIFD-HINKVDLQNRPFRLNG-DNGEYTCDALIIATGASAR  117 (190)
T ss_dssp             HHHHTTCEEECC-CEEEEECSSSSEEEEE-SSCEEEEEEEEECCCEEEC
T ss_pred             HHHhcCcEEecc-eeEEEecCCCcEEEEE-eeeeEeeeeeeeecceeee
Confidence            456778888774 7888887665  4444 3456899999999997654

>d1ebda2 c.3.1.5 (A:155-271) Dihydrolipoamide dehydrogenase {Bacillus stearothermophilus [TaxId: 1422]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Dihydrolipoamide dehydrogenase
species: Bacillus stearothermophilus [TaxId: 1422]

Probab=98.83  E-value=3.2e-09  Score=83.88  Aligned_cols=93  Identities=16%  Similarity=0.331  Sum_probs=68.1

Q ss_pred             CCCCcEEEEcCcHHHHHHHHHHHHcCCCCCcEEEEcCCCCCCCCCCCCcccccCCCCCCCCCCCCCccccCCCCCCCCHh
Q 012165           49 NENREFVIVGGGNAAGYAARTFVEHGMADGRLCIVSKEAYAPYERPALTKGYLFPLDKKPARLPGFHTCVGSGGERQTPE  128 (469)
Q Consensus        49 ~~~~~vvIIGgG~AGl~aA~~L~~~g~~~~~V~vie~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  128 (469)
                      ..+++++|||||+.|+.+|..|++.|.   +|||+++.+...   |.+        +.   .+           .....+
T Consensus        20 ~~p~~v~IiGgG~ig~E~A~~l~~~G~---~Vtlve~~~~il---~~~--------d~---~~-----------~~~l~~   71 (117)
T d1ebda2          20 EVPKSLVVIGGGYIGIELGTAYANFGT---KVTILEGAGEIL---SGF--------EK---QM-----------AAIIKK   71 (117)
T ss_dssp             SCCSEEEEECCSHHHHHHHHHHHHTTC---EEEEEESSSSSS---TTS--------CH---HH-----------HHHHHH
T ss_pred             hcCCeEEEECCCccceeeeeeeccccc---EEEEEEecceec---ccc--------cc---hh-----------HHHHHH
Confidence            345799999999999999999999987   899999877531   000        00   00           123456


Q ss_pred             HHHHCCcEEEeCCcEEEEeCCCc--EEEeC-CC--eEEEeccEEec
Q 012165          129 WYKEKGIEMIYQDPVTSIDIEKQ--TLITN-SG--KLLKYGSLIVA  169 (469)
Q Consensus       129 ~~~~~~i~~~~~~~v~~id~~~~--~v~~~-~g--~~~~yd~lVlA  169 (469)
                      .+++.|+++++++++++++....  .+++. +|  +++++|.|++.
T Consensus        72 ~l~~~GI~i~~~~~v~~i~~~~~~~~v~~~~~g~~~~i~~D~Vlvs  117 (117)
T d1ebda2          72 RLKKKGVEVVTNALAKGAEEREDGVTVTYEANGETKTIDADYVLVT  117 (117)
T ss_dssp             HHHHTTCEEEESEEEEEEEEETTEEEEEEEETTEEEEEEESEEEEC
T ss_pred             HHHhcCCEEEcCCEEEEEEEcCCEEEEEEEeCCCEEEEEeEEEEEC
Confidence            78899999999999999976553  34432 33  46899999873

>d1h6va2 c.3.1.5 (A:171-292) Mammalian thioredoxin reductase {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Mammalian thioredoxin reductase
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=98.83  E-value=4.9e-09  Score=83.26  Aligned_cols=93  Identities=18%  Similarity=0.254  Sum_probs=65.3

Q ss_pred             CCCcEEEEcCcHHHHHHHHHHHHcCCCCCcEEEEcCCCCCCCCCCCCcccccCCCCCCCCCCCCCccccCCCCCCCCHhH
Q 012165           50 ENREFVIVGGGNAAGYAARTFVEHGMADGRLCIVSKEAYAPYERPALTKGYLFPLDKKPARLPGFHTCVGSGGERQTPEW  129 (469)
Q Consensus        50 ~~~~vvIIGgG~AGl~aA~~L~~~g~~~~~V~vie~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  129 (469)
                      .+++++|||||+.|+.+|..|++.|.   +|+|+++++.++    .+        ++.   +           .....+.
T Consensus        19 ~P~~vvIIGgG~iG~E~A~~l~~lG~---~Vtii~~~~~l~----~~--------D~~---~-----------~~~l~~~   69 (122)
T d1h6va2          19 CPGKTLVVGASYVALECAGFLAGIGL---DVTVMVRSILLR----GF--------DQD---M-----------ANKIGEH   69 (122)
T ss_dssp             CCCSEEEECCSHHHHHHHHHHHHTTC---CEEEEESSSSST----TS--------CHH---H-----------HHHHHHH
T ss_pred             CCCeEEEECCCccHHHHHHHHhhcCC---eEEEEEechhhc----cC--------CHH---H-----------HHHHHHH
Confidence            44689999999999999999999987   799998643221    11        000   0           1234567


Q ss_pred             HHHCCcEEEeCCcEEEEeCCC----c--EEEeCC---C--eEEEeccEEeccC
Q 012165          130 YKEKGIEMIYQDPVTSIDIEK----Q--TLITNS---G--KLLKYGSLIVATG  171 (469)
Q Consensus       130 ~~~~~i~~~~~~~v~~id~~~----~--~v~~~~---g--~~~~yd~lVlAtG  171 (469)
                      +++.||++++++.|+.+....    .  .+++..   +  ..++||.|++|+|
T Consensus        70 l~~~Gv~i~~~~~v~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~D~vl~AiG  122 (122)
T d1h6va2          70 MEEHGIKFIRQFVPTKIEQIEAGTPGRLKVTAKSTNSEETIEDEFNTVLLAVG  122 (122)
T ss_dssp             HHHTTEEEEESCEEEEEEEEECSTTCEEEEEEECTTSCEEEEEEESEEECCCC
T ss_pred             HHHCCCEEEECCEEEEEEEecCCCccEEEEEEEECCCCcEEEEECCEEEEEeC
Confidence            889999999999888875321    1  333322   2  2467999999998

>d2gf3a1 c.3.1.2 (A:1-217,A:322-385) Sarcosine oxidase {Bacillus sp., strain b0618 [TaxId: 1409]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD-linked reductases, N-terminal domain
domain: Sarcosine oxidase
species: Bacillus sp., strain b0618 [TaxId: 1409]

Probab=98.82  E-value=2.2e-09  Score=98.61  Aligned_cols=44  Identities=23%  Similarity=0.351  Sum_probs=36.5

Q ss_pred             HHHHCCcEEEeCCcEEEEeCCCc--EEEeCCCeEEEeccEEeccCCC
Q 012165          129 WYKEKGIEMIYQDPVTSIDIEKQ--TLITNSGKLLKYGSLIVATGCT  173 (469)
Q Consensus       129 ~~~~~~i~~~~~~~v~~id~~~~--~v~~~~g~~~~yd~lVlAtG~~  173 (469)
                      .+++.|++++.+++|.+++.++.  .|.+++| ++.+|+||+|+|..
T Consensus       159 ~a~~~Gv~i~~~~~V~~i~~~~~~v~V~t~~g-~i~a~~VViAaG~~  204 (281)
T d2gf3a1         159 LAEARGAKVLTHTRVEDFDISPDSVKIETANG-SYTADKLIVSMGAW  204 (281)
T ss_dssp             HHHHTTCEEECSCCEEEEEECSSCEEEEETTE-EEEEEEEEECCGGG
T ss_pred             ccccccccccCCcEEEEEEEECCEEEEEECCc-EEEcCEEEECCCCc
Confidence            34678999999999999987665  6777777 49999999999975

>d1ojta2 c.3.1.5 (A:276-400) Dihydrolipoamide dehydrogenase {Neisseria meningitidis [TaxId: 487]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Dihydrolipoamide dehydrogenase
species: Neisseria meningitidis [TaxId: 487]

Probab=98.81  E-value=3.3e-09  Score=84.55  Aligned_cols=95  Identities=14%  Similarity=0.196  Sum_probs=70.5

Q ss_pred             CCCCcEEEEcCcHHHHHHHHHHHHcCCCCCcEEEEcCCCCCCCCCCCCcccccCCCCCCCCCCCCCccccCCCCCCCCHh
Q 012165           49 NENREFVIVGGGNAAGYAARTFVEHGMADGRLCIVSKEAYAPYERPALTKGYLFPLDKKPARLPGFHTCVGSGGERQTPE  128 (469)
Q Consensus        49 ~~~~~vvIIGgG~AGl~aA~~L~~~g~~~~~V~vie~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  128 (469)
                      ...++++|||||+.|+.+|..+++.|.   +|++++..+..           +...+...              .....+
T Consensus        24 ~~p~~vvIiGgG~IG~E~A~~~~~~G~---~Vtive~~~~i-----------l~~~d~~~--------------~~~l~~   75 (125)
T d1ojta2          24 EVPGKLLIIGGGIIGLEMGTVYSTLGS---RLDVVEMMDGL-----------MQGADRDL--------------VKVWQK   75 (125)
T ss_dssp             CCCSEEEEESCSHHHHHHHHHHHHHTC---EEEEECSSSSS-----------STTSCHHH--------------HHHHHH
T ss_pred             ccCCeEEEECCCHHHHHHHHHhhcCCC---EEEEEEeeccc-----------cccchhhH--------------HHHHHH
Confidence            445799999999999999999999987   89999987643           10000000              123456


Q ss_pred             HHHHCCcEEEeCCcEEEEeCCCc--EEEeC--CC--eEEEeccEEeccC
Q 012165          129 WYKEKGIEMIYQDPVTSIDIEKQ--TLITN--SG--KLLKYGSLIVATG  171 (469)
Q Consensus       129 ~~~~~~i~~~~~~~v~~id~~~~--~v~~~--~g--~~~~yd~lVlAtG  171 (469)
                      .+++.|++++.++++.++..+..  .+++.  ++  +++++|+|++|+|
T Consensus        76 ~l~~~gv~~~~~~~v~~v~~~~~g~~v~~~~~~g~~~~i~~D~vl~A~G  124 (125)
T d1ojta2          76 QNEYRFDNIMVNTKTVAVEPKEDGVYVTFEGANAPKEPQRYDAVLVAAG  124 (125)
T ss_dssp             HHGGGEEEEECSCEEEEEEEETTEEEEEEESSSCCSSCEEESCEEECCC
T ss_pred             HHHHcCcccccCcEEEEEEEcCCcEEEEEEeCCCCeEEEEcCEEEEecC
Confidence            77889999999999999976554  44443  23  3699999999999

>d3grsa2 c.3.1.5 (A:166-290) Glutathione reductase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Glutathione reductase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.81  E-value=3.1e-09  Score=84.92  Aligned_cols=93  Identities=18%  Similarity=0.232  Sum_probs=67.9

Q ss_pred             CCcEEEEcCcHHHHHHHHHHHHcCCCCCcEEEEcCCCCCCCCCCCCcccccCCCCCCCCCCCCCccccCCCCCCCCHhHH
Q 012165           51 NREFVIVGGGNAAGYAARTFVEHGMADGRLCIVSKEAYAPYERPALTKGYLFPLDKKPARLPGFHTCVGSGGERQTPEWY  130 (469)
Q Consensus        51 ~~~vvIIGgG~AGl~aA~~L~~~g~~~~~V~vie~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  130 (469)
                      +++++|||||+.|+.+|..|++.|.   +|+++++.+.+.   |.+        +..   +           .....+.+
T Consensus        22 pk~vvIvGgG~iG~E~A~~l~~~G~---~Vtlv~~~~~~l---~~~--------d~~---~-----------~~~~~~~l   73 (125)
T d3grsa2          22 PGRSVIVGAGYIAVEMAGILSALGS---KTSLMIRHDKVL---RSF--------DSM---I-----------STNCTEEL   73 (125)
T ss_dssp             CSEEEEECCSHHHHHHHHHHHHTTC---EEEEECSSSSSC---TTS--------CHH---H-----------HHHHHHHH
T ss_pred             CCEEEEEcCCccHHHHHHHHhcCCc---EEEEEeeccccc---cch--------hhH---H-----------HHHHHHHH
Confidence            4799999999999999999999987   899999876531   101        000   0           12346678


Q ss_pred             HHCCcEEEeCCcEEEEeCCCc--EEE---eCCC------eEEEeccEEeccC
Q 012165          131 KEKGIEMIYQDPVTSIDIEKQ--TLI---TNSG------KLLKYGSLIVATG  171 (469)
Q Consensus       131 ~~~~i~~~~~~~v~~id~~~~--~v~---~~~g------~~~~yd~lVlAtG  171 (469)
                      ++.|++++.+++++++.....  .+.   ...|      ..+.+|.|++|+|
T Consensus        74 ~~~Gv~i~~~~~v~~i~~~~~g~~v~~~~~~~g~~~~~~~~~~~D~vl~a~G  125 (125)
T d3grsa2          74 ENAGVEVLKFSQVKEVKKTLSGLEVSMVTAVPGRLPVMTMIPDVDCLLWAIG  125 (125)
T ss_dssp             HHTTCEEETTEEEEEEEEETTEEEEEEEECCTTSCCEEEEEEEESEEEECSC
T ss_pred             HHCCCEEEeCCEEEEEEEcCCeEEEEEEEccCCcCcCccccccCCEEEEEeC
Confidence            899999999999999976543  222   1233      2467999999998

>d1v59a2 c.3.1.5 (A:161-282) Dihydrolipoamide dehydrogenase {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Dihydrolipoamide dehydrogenase
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=98.80  E-value=4.3e-09  Score=83.61  Aligned_cols=93  Identities=17%  Similarity=0.328  Sum_probs=67.7

Q ss_pred             CCCCcEEEEcCcHHHHHHHHHHHHcCCCCCcEEEEcCCCCCCCCCCCCcccccCCCCCCCCCCCCCccccCCCCCCCCHh
Q 012165           49 NENREFVIVGGGNAAGYAARTFVEHGMADGRLCIVSKEAYAPYERPALTKGYLFPLDKKPARLPGFHTCVGSGGERQTPE  128 (469)
Q Consensus        49 ~~~~~vvIIGgG~AGl~aA~~L~~~g~~~~~V~vie~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  128 (469)
                      ..+++++|||||+-|+.+|..|++.|.   +|||++..+.+.   |.+        +.   ++           .....+
T Consensus        21 ~~p~~~vIiG~G~ig~E~A~~l~~lG~---~Vtii~~~~~~l---~~~--------d~---ei-----------~~~l~~   72 (122)
T d1v59a2          21 EIPKRLTIIGGGIIGLEMGSVYSRLGS---KVTVVEFQPQIG---ASM--------DG---EV-----------AKATQK   72 (122)
T ss_dssp             SCCSEEEEECCSHHHHHHHHHHHHTTC---EEEEECSSSSSS---SSS--------CH---HH-----------HHHHHH
T ss_pred             cCCCeEEEECCCchHHHHHHHHHhhCc---ceeEEEeccccc---hhh--------hh---hh-----------HHHHHH
Confidence            345799999999999999999999987   899999876531   111        00   00           123456


Q ss_pred             HHHHCCcEEEeCCcEEEEeCCC--cE--EEeCCC-----eEEEeccEEec
Q 012165          129 WYKEKGIEMIYQDPVTSIDIEK--QT--LITNSG-----KLLKYGSLIVA  169 (469)
Q Consensus       129 ~~~~~~i~~~~~~~v~~id~~~--~~--v~~~~g-----~~~~yd~lVlA  169 (469)
                      .+++.||++++++++.++...+  ..  +++.++     +++++|.|++|
T Consensus        73 ~l~~~GV~i~~~~~v~~v~~~~~~~~v~~~~~~~~~~~~~~ie~D~vlvA  122 (122)
T d1v59a2          73 FLKKQGLDFKLSTKVISAKRNDDKNVVEIVVEDTKTNKQENLEAEVLLVA  122 (122)
T ss_dssp             HHHHTTCEEECSEEEEEEEEETTTTEEEEEEEETTTTEEEEEEESEEEEC
T ss_pred             HHHhccceEEeCCEEEEEEEeCCCcEEEEEEEeCCCCCeEEEEeCEEEEC
Confidence            7889999999999999987543  23  333332     46999999987

>d2voua1 c.3.1.2 (A:2-163,A:292-394) Dihydroxypyridine hydroxylase DhpH {Arthrobacter nicotinovorans [TaxId: 29320]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD-linked reductases, N-terminal domain
domain: Dihydroxypyridine hydroxylase DhpH
species: Arthrobacter nicotinovorans [TaxId: 29320]

Probab=98.78  E-value=3.7e-09  Score=96.01  Aligned_cols=123  Identities=10%  Similarity=0.047  Sum_probs=72.0

Q ss_pred             CCCCcEEEEcCcHHHHHHHHHHHHcCCCCCcEEEEcCCCCCCCCCC-C--Cccc---cc--CCCC-CC-CCCCCCCcccc
Q 012165           49 NENREFVIVGGGNAAGYAARTFVEHGMADGRLCIVSKEAYAPYERP-A--LTKG---YL--FPLD-KK-PARLPGFHTCV  118 (469)
Q Consensus        49 ~~~~~vvIIGgG~AGl~aA~~L~~~g~~~~~V~vie~~~~~~~~~~-~--l~~~---~~--~~~~-~~-~~~~~~~~~~~  118 (469)
                      +...+|+|||||+||+++|..|+++|+   +|+|+|+.+....... .  ++..   .+  .+.. .. ......+....
T Consensus         2 ~~~~kV~IiGaG~aGl~~A~~L~~~G~---~v~v~Er~~~~~~~~~~g~~~~~~~~~~l~~~g~~~~~~~~~~~~~~~~~   78 (265)
T d2voua1           2 PTTDRIAVVGGSISGLTAALMLRDAGV---DVDVYERSPQPLSGFGTGIVVQPELVHYLLEQGVELDSISVPSSSMEYVD   78 (265)
T ss_dssp             CCCSEEEEECCSHHHHHHHHHHHHTTC---EEEEECSSSSSCCCCSCEEECCHHHHHHHHHTTCCGGGTCBCCCEEEEEE
T ss_pred             CCCCcEEEECcCHHHHHHHHHHHHCCC---CEEEEeCCCCCCCCCceEEEECccHHHHHHHcCcchhhhccCCCcceeEe
Confidence            345789999999999999999999998   8999998764311100 0  0000   00  0000 00 00000000000


Q ss_pred             ----------CCCCCCCCH-----h-HHHHCCcEEEeCCcEEEEeCCC--cEEEeCCCeEEEeccEEeccCCCC
Q 012165          119 ----------GSGGERQTP-----E-WYKEKGIEMIYQDPVTSIDIEK--QTLITNSGKLLKYGSLIVATGCTA  174 (469)
Q Consensus       119 ----------~~~~~~~~~-----~-~~~~~~i~~~~~~~v~~id~~~--~~v~~~~g~~~~yd~lVlAtG~~~  174 (469)
                                .........     . .....+..++.+.+++.++...  -+++++||+++++|++|.|.|...
T Consensus        79 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~v~v~~~dG~~~~~d~~v~adG~~s  152 (265)
T d2voua1          79 ALTGERVGSVPADWRFTSYDSIYGGLYELFGPERYHTSKCLVGLSQDSETVQMRFSDGTKAEANWVIGADGGAS  152 (265)
T ss_dssp             TTTCCEEEEEECCCCEEEHHHHHHHHHHHHCSTTEETTCCEEEEEECSSCEEEEETTSCEEEESEEEECCCTTC
T ss_pred             ccCCceecccccccccchhHHHHHHHHHhcccceeecCcEEEEEEeeCCceEEEECCCCEEEEEEEeccccccc
Confidence                      000000011     1 1123467788999999997654  467889999999999999999653

>d1vdca1 c.3.1.5 (A:1-117,A:244-316) Thioredoxin reductase {Mouse-ear cress (Arabidopsis thaliana) [TaxId: 3702]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Thioredoxin reductase
species: Mouse-ear cress (Arabidopsis thaliana) [TaxId: 3702]

Probab=98.75  E-value=3.1e-09  Score=91.87  Aligned_cols=114  Identities=20%  Similarity=0.247  Sum_probs=68.5

Q ss_pred             CCCcEEEEcCcHHHHHHHHHHHHcCCCCCcEEEEcCCCCCCCCCCCCcccccCCCCCCCCCCCCCcc-ccCCCCCCCCHh
Q 012165           50 ENREFVIVGGGNAAGYAARTFVEHGMADGRLCIVSKEAYAPYERPALTKGYLFPLDKKPARLPGFHT-CVGSGGERQTPE  128 (469)
Q Consensus        50 ~~~~vvIIGgG~AGl~aA~~L~~~g~~~~~V~vie~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~  128 (469)
                      .++||+||||||||++||.+|+|.|.   +++|+|+.....+..-.    .+.. .....+++++.. ..+........+
T Consensus         4 ~~~~VvIIGgGpaGl~aA~~~ar~g~---~v~vie~~~~~~~~~~~----~~~~-~~~~~~~~~~~~~~~~~el~~~~~~   75 (192)
T d1vdca1           4 HNTRLCIVGSGPAAHTAAIYAARAEL---KPLLFEGWMANDIAPGG----QLTT-TTDVENFPGFPEGILGVELTDKFRK   75 (192)
T ss_dssp             EEEEEEEECCSHHHHHHHHHHHHTTC---CCEEECCSSBTTBCTTC----GGGG-CSEECCSTTCTTCEEHHHHHHHHHH
T ss_pred             ccceEEEECCCHHHHHHHHHHHHcCC---cEEEEEeeccccccccc----cccc-chhhhccccccccccchHHHHHHHH
Confidence            35899999999999999999999987   79999976543222100    0000 000111111110 000000111223


Q ss_pred             HHHHCCcEEEeCCcEEEEeCCCc--EEEeCCCeEEEeccEEeccCCC
Q 012165          129 WYKEKGIEMIYQDPVTSIDIEKQ--TLITNSGKLLKYGSLIVATGCT  173 (469)
Q Consensus       129 ~~~~~~i~~~~~~~v~~id~~~~--~v~~~~g~~~~yd~lVlAtG~~  173 (469)
                      ...+.++++..+ .|..++...+  .+. .+...+.+|.+++++|..
T Consensus        76 q~~~~g~~i~~~-~V~~~~~~~~~~~v~-~~~~~~~~~~~~~a~g~~  120 (192)
T d1vdca1          76 QSERFGTTIFTE-TVTKVDFSSKPFKLF-TDSKAILADAVILAIGAV  120 (192)
T ss_dssp             HHHHTTCEEECC-CCCEEECSSSSEEEE-CSSEEEEEEEEEECCCEE
T ss_pred             HHHhhcceeeee-eEEecccccCcEEec-ccceeeeeeeEEEEeeee
Confidence            345679998764 7888887654  343 345568999999999953

>d1d4ca2 c.3.1.4 (A:103-359,A:506-570) Flavocytochrome c3 (respiratory fumarate reductase) {Shewanella putrefaciens [TaxId: 24]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: Succinate dehydrogenase/fumarate reductase flavoprotein N-terminal domain
domain: Flavocytochrome c3 (respiratory fumarate reductase)
species: Shewanella putrefaciens [TaxId: 24]

Probab=98.73  E-value=3.9e-08  Score=92.04  Aligned_cols=50  Identities=20%  Similarity=0.299  Sum_probs=39.7

Q ss_pred             eHHHHHHcCcEEEcCCeEEEEEeCCCCcEEEEEcCC--C--CEEeCCEEEEccC
Q 012165          236 YEQLYQQNGVKFVKGASIKNLEAGSDGRVAAVKLED--G--STIDADTIVIGIG  285 (469)
Q Consensus       236 ~~~~l~~~gV~~~~~~~v~~i~~~~~~~v~~v~~~~--g--~~i~~D~vi~a~G  285 (469)
                      +.+...+.|+++++++.++++..+++++|.+|...+  +  ..+.++.||+|+|
T Consensus       158 l~~~a~~~gv~i~~~t~v~~li~d~~G~V~Gv~~~~~~~~~~~i~Ak~VIlAtG  211 (322)
T d1d4ca2         158 LWDNAVKRGTDIRLNSRVVRILEDASGKVTGVLVKGEYTGYYVIKADAVVIAAG  211 (322)
T ss_dssp             HHHHHHHTTCEEETTEEEEEEECCSSSCCCEEEEEETTTEEEEEECSEEEECCC
T ss_pred             HHHHHHhcCceEEEeeecccccccccccccceEEEeecccEEEEeCCeEEEcCC
Confidence            445566789999999999999876778877776543  2  2589999999998

>d1lvla1 c.3.1.5 (A:1-150,A:266-335) Dihydrolipoamide dehydrogenase {Pseudomonas putida [TaxId: 303]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Dihydrolipoamide dehydrogenase
species: Pseudomonas putida [TaxId: 303]

Probab=98.70  E-value=1.5e-09  Score=96.14  Aligned_cols=36  Identities=25%  Similarity=0.340  Sum_probs=33.0

Q ss_pred             CCCCcEEEEcCcHHHHHHHHHHHHcCCCCCcEEEEcCCC
Q 012165           49 NENREFVIVGGGNAAGYAARTFVEHGMADGRLCIVSKEA   87 (469)
Q Consensus        49 ~~~~~vvIIGgG~AGl~aA~~L~~~g~~~~~V~vie~~~   87 (469)
                      ++++|++||||||||++||..+++.|.   +|+|||++.
T Consensus         3 ~~~~DlvVIG~GpaGl~aA~~aa~~G~---~V~liE~~~   38 (220)
T d1lvla1           3 TIQTTLLIIGGGPGGYVAAIRAGQLGI---PTVLVEGQA   38 (220)
T ss_dssp             CEECSEEEECCSHHHHHHHHHHHHHTC---CEEEECSSC
T ss_pred             ccccCEEEECCCHHHHHHHHHHHHCCC---cEEEEecCC
Confidence            456899999999999999999999997   899999875

>d1dxla2 c.3.1.5 (A:153-275) Dihydrolipoamide dehydrogenase {Garden pea (Pisum sativum) [TaxId: 3888]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Dihydrolipoamide dehydrogenase
species: Garden pea (Pisum sativum) [TaxId: 3888]

Probab=98.67  E-value=2.1e-08  Score=79.71  Aligned_cols=93  Identities=15%  Similarity=0.330  Sum_probs=68.2

Q ss_pred             CCCCcEEEEcCcHHHHHHHHHHHHcCCCCCcEEEEcCCCCCCCCCCCCcccccCCCCCCCCCCCCCccccCCCCCCCCHh
Q 012165           49 NENREFVIVGGGNAAGYAARTFVEHGMADGRLCIVSKEAYAPYERPALTKGYLFPLDKKPARLPGFHTCVGSGGERQTPE  128 (469)
Q Consensus        49 ~~~~~vvIIGgG~AGl~aA~~L~~~g~~~~~V~vie~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  128 (469)
                      ..+++++|||||+-|+.+|..+++.|.   +|||+++.+...   |.+        +..   +           .....+
T Consensus        23 ~~p~~~viiG~G~iglE~A~~~~~~G~---~Vtvi~~~~~~l---~~~--------d~~---~-----------~~~l~~   74 (123)
T d1dxla2          23 EIPKKLVVIGAGYIGLEMGSVWGRIGS---EVTVVEFASEIV---PTM--------DAE---I-----------RKQFQR   74 (123)
T ss_dssp             SCCSEEEESCCSHHHHHHHHHHHHHTC---EEEEECSSSSSS---TTS--------CHH---H-----------HHHHHH
T ss_pred             ccCCeEEEEccchHHHHHHHHHHhcCC---eEEEEEEccccC---chh--------hhc---c-----------hhhhhh
Confidence            345799999999999999999999987   899999877531   111        000   0           123467


Q ss_pred             HHHHCCcEEEeCCcEEEEeCCCc--EEE--eC-CC--eEEEeccEEec
Q 012165          129 WYKEKGIEMIYQDPVTSIDIEKQ--TLI--TN-SG--KLLKYGSLIVA  169 (469)
Q Consensus       129 ~~~~~~i~~~~~~~v~~id~~~~--~v~--~~-~g--~~~~yd~lVlA  169 (469)
                      .+++.|+++++++++.+++..+.  +++  .. +|  +.+++|++++|
T Consensus        75 ~l~~~GI~i~~~~~v~~i~~~~~~~~v~~~~~~~g~~~~i~~D~vLvA  122 (123)
T d1dxla2          75 SLEKQGMKFKLKTKVVGVDTSGDGVKLTVEPSAGGEQTIIEADVVLVS  122 (123)
T ss_dssp             HHHHSSCCEECSEEEEEEECSSSSEEEEEEESSSCCCEEEEESEEECC
T ss_pred             hhhcccceEEcCCceEEEEEccCeEEEEEEECCCCeEEEEEcCEEEEc
Confidence            78999999999999999986543  333  32 33  35899999987

>d1fl2a2 c.3.1.5 (A:326-451) Alkyl hydroperoxide reductase subunit F (AhpF), C-terminal domains {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Alkyl hydroperoxide reductase subunit F (AhpF), C-terminal domains
species: Escherichia coli [TaxId: 562]

Probab=98.66  E-value=6.9e-08  Score=76.76  Aligned_cols=95  Identities=27%  Similarity=0.412  Sum_probs=73.6

Q ss_pred             cCcEEEecCHHHHHHHHHhhhcCCeEEEEcCChHHHHHHHHHHhCCCeEe-------------eeHHHHHHcCcEEEcCC
Q 012165          185 LPGVHYIRDVADADALISSLEKAKKVVVVGGGYIGMEVAAAAVGWKLDTT-------------RYEQLYQQNGVKFVKGA  251 (469)
Q Consensus       185 ~~~v~~~~~~~~~~~~~~~~~~~~~vvVvG~G~~g~e~A~~l~~~g~~v~-------------~~~~~l~~~gV~~~~~~  251 (469)
                      ..|++++.      .+...+.++|+|+|||+|.+++|.|..|++...+|+             ..++..+..+|++++++
T Consensus        14 gkGV~yca------~cD~~~~~gk~V~VvGgG~sA~~~A~~L~~~a~~V~li~r~~~~~~~~~~~~~~~~~~~I~v~~~~   87 (126)
T d1fl2a2          14 TKGVTYCP------HCDGPLFKGKRVAVIGGGNSGVEAAIDLAGIVEHVTLLEFAPEMKADQVLQDKLRSLKNVDIILNA   87 (126)
T ss_dssp             TTTEESCH------HHHGGGGBTCEEEEECCSHHHHHHHHHHHTTBSEEEEECSSSSCCSCHHHHHHHHTCTTEEEESSE
T ss_pred             CCCEEEEE------ecChhhcCCceEEEEeCCHHHHHHHHhhhccCCceEEEecccccccccccccccccccceeEEcCc
Confidence            36787752      223346789999999999999999999999998888             22334444679999999


Q ss_pred             eEEEEEeCCCCcEEEEEcCC---C--CEEeCCEEEEccCC
Q 012165          252 SIKNLEAGSDGRVAAVKLED---G--STIDADTIVIGIGA  286 (469)
Q Consensus       252 ~v~~i~~~~~~~v~~v~~~~---g--~~i~~D~vi~a~G~  286 (469)
                      ++.++..+ ++.+.++++.|   |  +++++|-+++++|.
T Consensus        88 ~v~~i~G~-~~~v~~v~l~~~~tge~~~l~vdgvFv~IGl  126 (126)
T d1fl2a2          88 QTTEVKGD-GSKVVGLEYRDRVSGDIHNIELAGIFVQIGL  126 (126)
T ss_dssp             EEEEEEES-SSSEEEEEEEETTTCCEEEEECSEEEECSCE
T ss_pred             ceEEEEcc-ccceeeEEEEECCCCCEEEEECCEEEEEeCC
Confidence            99999853 45677788754   4  36999999999984

>d1gtea4 c.4.1.1 (A:184-287,A:441-532) Dihydropyrimidine dehydrogenase, domain 2 {Pig (Sus scrofa) [TaxId: 9823]}

class: Alpha and beta proteins (a/b)
fold: Nucleotide-binding domain
superfamily: Nucleotide-binding domain
family: N-terminal domain of adrenodoxin reductase-like
domain: Dihydropyrimidine dehydrogenase, domain 2
species: Pig (Sus scrofa) [TaxId: 9823]

Probab=98.65  E-value=1.1e-08  Score=88.33  Aligned_cols=115  Identities=23%  Similarity=0.273  Sum_probs=72.1

Q ss_pred             cCCeEEEEcCChHHHHHHHHHHhCCC-eEe---------------------------eeHHHHHHcCcEEEcCCeEEEEE
Q 012165          206 KAKKVVVVGGGYIGMEVAAAAVGWKL-DTT---------------------------RYEQLYQQNGVKFVKGASIKNLE  257 (469)
Q Consensus       206 ~~~~vvVvG~G~~g~e~A~~l~~~g~-~v~---------------------------~~~~~l~~~gV~~~~~~~v~~i~  257 (469)
                      .++||+|||+|++|+++|.+|+++|. +|+                           .........+.++.....+....
T Consensus         3 ~~~kVaIIGaGpaGl~aA~~l~~~G~~~V~v~E~~~~~gg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~   82 (196)
T d1gtea4           3 YSAKIALLGAGPASISCASFLARLGYSDITIFEKQEYVGGLSTSEIPQFRLPYDVVNFEIELMKDLGVKIICGKSLSENE   82 (196)
T ss_dssp             GGCCEEEECCSHHHHHHHHHHHHTTCCCEEEEESSSSCSTHHHHTSCTTTSCHHHHHHHHHHHHTTTCEEEESCCBSTTS
T ss_pred             CCCEEEEECChHHHHHHHHHHHHCCCCeEEEEEecCcccchhhhhccccccccccccchhhhhhccceeEEeeEEeccce
Confidence            57999999999999999999999998 476                           12233344556666554332111


Q ss_pred             eCCCCcEEEEEcCCCCEEeCCEEEEccCCccCCch--hh--hcCCcc-cCCCEEeC-CCCCCCCCceEEeccccccCC
Q 012165          258 AGSDGRVAAVKLEDGSTIDADTIVIGIGAKPTVSP--FE--RVGLNS-SVGGIQVD-GQFRTRMPGIFAIGDVAAFPL  329 (469)
Q Consensus       258 ~~~~~~v~~v~~~~g~~i~~D~vi~a~G~~p~~~~--~~--~~gl~~-~~g~i~Vd-~~~~t~~~~Vfa~GD~a~~~~  329 (469)
                               ..+.+..+..+|.+++++|..+....  ..  ...... ..+....+ ..++|+.+.||+.||++....
T Consensus        83 ---------~~~~~~~~~~~~~~~ia~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~g~vigg~~  151 (196)
T d1gtea4          83 ---------ITLNTLKEEGYKAAFIGIGLPEVLRDPKVKEALSPIKFNRWDLPEVDPETMQTSEPWVFAGGDIVGMAN  151 (196)
T ss_dssp             ---------BCHHHHHHTTCCEEEECCCCCEECCCHHHHHHTTTSCBCTTSSBCCCTTTCBCSSTTEEECSGGGCSCC
T ss_pred             ---------eeeehhhccccceeeEEeccccCCccccccccccccccccccceeccccccCCCcccccccccccCCcc
Confidence                     11222234568899999997543322  11  111111 12344444 468899999999999987543

>d2ivda1 c.3.1.2 (A:10-306,A:415-464) Protoporphyrinogen oxidase {Myxococcus xanthus [TaxId: 34]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD-linked reductases, N-terminal domain
domain: Protoporphyrinogen oxidase
species: Myxococcus xanthus [TaxId: 34]

Probab=98.64  E-value=1.2e-08  Score=94.29  Aligned_cols=108  Identities=19%  Similarity=0.254  Sum_probs=65.2

Q ss_pred             HHHHHHcCcEEEcCCeEEEEEeCCCCcEEEEEcCCC--CEEeCCEEEEccCCccCCchhhhcCCcc--------cCCC--
Q 012165          237 EQLYQQNGVKFVKGASIKNLEAGSDGRVAAVKLEDG--STIDADTIVIGIGAKPTVSPFERVGLNS--------SVGG--  304 (469)
Q Consensus       237 ~~~l~~~gV~~~~~~~v~~i~~~~~~~v~~v~~~~g--~~i~~D~vi~a~G~~p~~~~~~~~gl~~--------~~g~--  304 (469)
                      .++.++.|+++++++.|++|+.++++. ..+...+|  ++++||.||+|+|......++++..-..        ..+.  
T Consensus       226 ~~l~~~~g~~i~~~~~V~~I~~~~~~~-~v~~~~~~~~~~~~ad~VV~a~p~~~~~~Ll~~~~~~~~~~~~~~~~~~~~~  304 (347)
T d2ivda1         226 DALAASLGDAAHVGARVEGLAREDGGW-RLIIEEHGRRAELSVAQVVLAAPAHATAKLLRPLDDALAALVAGIYNLGHLE  304 (347)
T ss_dssp             HHHHHHHGGGEESSEEEEEEECC--CC-EEEEEETTEEEEEECSEEEECSCHHHHHHHHTTTCHHHHHHHHTCCBTTHHH
T ss_pred             HHHHHHhhcccccCCEEEEEEEeCCeE-EEEEEcCCeEEEEECCEEEECCCHHHHHHhccCCCHHHHHHhhcceecCccc
Confidence            445566699999999999998654443 22233344  4689999999998643222332221110        0111  


Q ss_pred             -EEeCCCCCCCCCceEEeccccccCCccCCcccccchHHHHHHHHHHHHHHHh
Q 012165          305 -IQVDGQFRTRMPGIFAIGDVAAFPLKMYDRTARVEHVDHARQSAQHCIKALL  356 (469)
Q Consensus       305 -i~Vd~~~~t~~~~Vfa~GD~a~~~~~~~~~~~~~~~~~~A~~~a~~~a~~i~  356 (469)
                       +...+...++.|++|++||.....           .+..+..+|..+|+.|.
T Consensus       305 ~~~~~~~~~~~~p~~~~~G~~~~g~-----------~~~~~~~~g~~~a~~~~  346 (347)
T d2ivda1         305 RVAAIDAALQRLPGLHLIGNAYKGV-----------GLNDCIRNAAQLADALV  346 (347)
T ss_dssp             HHHHHHHHHHTSTTEEECSTTTSCC-----------SHHHHHHHHHHHHHHHC
T ss_pred             ceecccccccCCCCEEEecccccCC-----------CHHHHHHHHHHHHHHhh
Confidence             111112235789999999986532           34567888888888875

>d1pj5a2 c.3.1.2 (A:4-219,A:339-427) N,N-dimethylglycine oxidase {Arthrobacter globiformis [TaxId: 1665]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD-linked reductases, N-terminal domain
domain: N,N-dimethylglycine oxidase
species: Arthrobacter globiformis [TaxId: 1665]

Probab=98.64  E-value=8e-09  Score=96.01  Aligned_cols=43  Identities=16%  Similarity=0.219  Sum_probs=35.9

Q ss_pred             HHHCCcEEEeCCcEEEEeCCCcE---EEeCCCeEEEeccEEeccCCC
Q 012165          130 YKEKGIEMIYQDPVTSIDIEKQT---LITNSGKLLKYGSLIVATGCT  173 (469)
Q Consensus       130 ~~~~~i~~~~~~~v~~id~~~~~---v~~~~g~~~~yd~lVlAtG~~  173 (469)
                      +++.|++++.+++|+++..++..   |.+++| ++++|+||+|+|..
T Consensus       158 a~~~gv~i~~~~~V~~i~~~~~~v~~V~T~~g-~i~a~~VV~aaG~~  203 (305)
T d1pj5a2         158 TESAGVTYRGSTTVTGIEQSGGRVTGVQTADG-VIPADIVVSCAGFW  203 (305)
T ss_dssp             HHHTTCEEECSCCEEEEEEETTEEEEEEETTE-EEECSEEEECCGGG
T ss_pred             hhcccccccCCceEEEEEEeCCEEEEEeccce-eEECCEEEEecchh
Confidence            45779999999999999887664   567666 59999999999975

>d1trba2 c.3.1.5 (A:119-244) Thioredoxin reductase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Thioredoxin reductase
species: Escherichia coli [TaxId: 562]

Probab=98.63  E-value=1.1e-07  Score=75.65  Aligned_cols=93  Identities=19%  Similarity=0.302  Sum_probs=72.8

Q ss_pred             CcEEEecCHHHHHHHHHhhhcCCeEEEEcCChHHHHHHHHHHhCCCeEe----------------eeHHHHHHcCcEEEc
Q 012165          186 PGVHYIRDVADADALISSLEKAKKVVVVGGGYIGMEVAAAAVGWKLDTT----------------RYEQLYQQNGVKFVK  249 (469)
Q Consensus       186 ~~v~~~~~~~~~~~~~~~~~~~~~vvVvG~G~~g~e~A~~l~~~g~~v~----------------~~~~~l~~~gV~~~~  249 (469)
                      .|++++.      .+...+.++|+|+|||+|.+++|.|..|+++..+|+                .+.+..+..+|.+++
T Consensus        12 kgV~yca------~cD~~~~~~k~V~VvGgGdsA~e~A~~L~~~a~~V~li~r~~~~~~~~~~~~~~~~~~~~~~i~~~~   85 (126)
T d1trba2          12 RGVSACA------TSDGFFYRNQKVAVIGGGNTAVEEALYLSNIASEVHLIHRRDGFRAEKILIKRLMDKVENGNIILHT   85 (126)
T ss_dssp             TTEESCH------HHHGGGGTTSEEEEECSSHHHHHHHHHHTTTSSEEEEECSSSSCCCCHHHHHHHHHHHHTSSEEEEC
T ss_pred             CCEEEEE------ecchHHhCCCEEEEECCCHHHHHHHHHHhhcCCcEEEEeecccccchhHHHHHHHHhhcccceeEec
Confidence            5677652      223346789999999999999999999999999988                223334458999999


Q ss_pred             CCeEEEEEeCCCCcEEEEEcCCC------CEEeCCEEEEccC
Q 012165          250 GASIKNLEAGSDGRVAAVKLEDG------STIDADTIVIGIG  285 (469)
Q Consensus       250 ~~~v~~i~~~~~~~v~~v~~~~g------~~i~~D~vi~a~G  285 (469)
                      ++.+.++..+ +..+.+|++.|.      +++++|-+++++|
T Consensus        86 ~~~v~~i~G~-~~~v~~v~l~~~~~~e~~~~l~~dgvFv~iG  126 (126)
T d1trba2          86 NRTLEEVTGD-QMGVTGVRLRDTQNSDNIESLDVAGLFVAIG  126 (126)
T ss_dssp             SCEEEEEEEC-SSSEEEEEEECCTTCCCCEEEECSEEEECSC
T ss_pred             ceEEEEEECC-CCceEEEEEEECCCCceEEEEECCEEEEEeC
Confidence            9999999853 455778887653      3599999999987

>d1fl2a1 c.3.1.5 (A:212-325,A:452-521) Alkyl hydroperoxide reductase subunit F (AhpF), C-terminal domains {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Alkyl hydroperoxide reductase subunit F (AhpF), C-terminal domains
species: Escherichia coli [TaxId: 562]

Probab=98.60  E-value=3e-08  Score=84.68  Aligned_cols=109  Identities=21%  Similarity=0.219  Sum_probs=67.4

Q ss_pred             CcEEEEcCcHHHHHHHHHHHHcCCCCCcEEEEcCCCCCCCCCCCCcccccCCCCCCCCCCCCCccccCCCCCCCCHhHHH
Q 012165           52 REFVIVGGGNAAGYAARTFVEHGMADGRLCIVSKEAYAPYERPALTKGYLFPLDKKPARLPGFHTCVGSGGERQTPEWYK  131 (469)
Q Consensus        52 ~~vvIIGgG~AGl~aA~~L~~~g~~~~~V~vie~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  131 (469)
                      |||+||||||+|++||.++++.|.   +++|||++...     .+...      ....+++.+....+...........+
T Consensus         2 yDViIIGgGpaGl~AAi~aar~G~---~v~iie~~~gg-----~~~~~------~~~~~~~~~~~~~~~~~~~~~~~~~~   67 (184)
T d1fl2a1           2 YDVLIVGSGPAGAAAAIYSARKGI---RTGLMGERFGG-----QILDT------VDIENYISVPKTEGQKLAGALKVHVD   67 (184)
T ss_dssp             EEEEEECCSHHHHHHHHHHHTTTC---CEEEECSSTTG-----GGGGC------CEECCBTTBSSEEHHHHHHHHHHHHH
T ss_pred             CcEEEECcCHHHHHHHHHHHHcCC---eEEEEEEecCC-----ccccc------ccceeccccchhhhHHHHHHHHHHhh
Confidence            799999999999999999999987   79999975311     01000      00111221111110000111233455


Q ss_pred             HCCcEEEeCCcEEEEeCCC-----cEEEeCCCeEEEeccEEeccCCCC
Q 012165          132 EKGIEMIYQDPVTSIDIEK-----QTLITNSGKLLKYGSLIVATGCTA  174 (469)
Q Consensus       132 ~~~i~~~~~~~v~~id~~~-----~~v~~~~g~~~~yd~lVlAtG~~~  174 (469)
                      +.+++......+..+....     +.....++.++..+.+++++|..+
T Consensus        68 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~  115 (184)
T d1fl2a1          68 EYDVDVIDSQSASKLIPAAVEGGLHQIETASGAVLKARSIIVATGAKL  115 (184)
T ss_dssp             TSCEEEECSCCEEEEECCSSTTCCEEEEETTSCEEEEEEEEECCCEEE
T ss_pred             heeceeeccceeeeecccccccceeeeeeecceeeecccccccccccc
Confidence            6778887777777775432     245566777899999999999643

>d1dxla1 c.3.1.5 (A:4-152,A:276-347) Dihydrolipoamide dehydrogenase {Garden pea (Pisum sativum) [TaxId: 3888]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Dihydrolipoamide dehydrogenase
species: Garden pea (Pisum sativum) [TaxId: 3888]

Probab=98.59  E-value=2.7e-09  Score=94.37  Aligned_cols=37  Identities=24%  Similarity=0.399  Sum_probs=33.7

Q ss_pred             CCCcEEEEcCcHHHHHHHHHHHHcCCCCCcEEEEcCCCCC
Q 012165           50 ENREFVIVGGGNAAGYAARTFVEHGMADGRLCIVSKEAYA   89 (469)
Q Consensus        50 ~~~~vvIIGgG~AGl~aA~~L~~~g~~~~~V~vie~~~~~   89 (469)
                      ..|||+||||||||++||.++++.|.   +|+|||+.+..
T Consensus         2 ~~yDvvVIGgGpaGl~aA~~aa~~G~---kV~vie~~~~~   38 (221)
T d1dxla1           2 DENDVVIIGGGPGGYVAAIKAAQLGF---KTTCIEKRGAL   38 (221)
T ss_dssp             CCCCEEEECCSHHHHHHHHHHHHHTC---CEEEEECSSSS
T ss_pred             CcCCEEEECCCHHHHHHHHHHHHCCC---cEEEEEecCCC
Confidence            56999999999999999999999987   79999987654

>d1b5qa1 c.3.1.2 (A:5-293,A:406-463) Polyamine oxidase {Maize (Zea mays) [TaxId: 4577]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD-linked reductases, N-terminal domain
domain: Polyamine oxidase
species: Maize (Zea mays) [TaxId: 4577]

Probab=98.58  E-value=3.1e-08  Score=89.81  Aligned_cols=109  Identities=16%  Similarity=0.174  Sum_probs=67.3

Q ss_pred             HHHHHcCcEEEcCCeEEEEEeCCCCcEEEEEcCCCCEEeCCEEEEccCCccCC----ch------hhhcCCcccCCCEEe
Q 012165          238 QLYQQNGVKFVKGASIKNLEAGSDGRVAAVKLEDGSTIDADTIVIGIGAKPTV----SP------FERVGLNSSVGGIQV  307 (469)
Q Consensus       238 ~~l~~~gV~~~~~~~v~~i~~~~~~~v~~v~~~~g~~i~~D~vi~a~G~~p~~----~~------~~~~gl~~~~g~i~V  307 (469)
                      ...+..+..+..++.+..+...+ ..+ .|.+.||+.+.+|.++++.......    .+      .....+. ..+...+
T Consensus       218 ~~~~~~~~~i~~~~~v~~i~~~~-~~v-~v~~~~g~~~~~d~~~~~~~~~~l~~~~~~~~p~l~~~~~~ai~-~~~~~~~  294 (347)
T d1b5qa1         218 KSGKIVDPRLQLNKVVREIKYSP-GGV-TVKTEDNSVYSADYVMVSASLGVLQSDLIQFKPKLPTWKVRAIY-QFWPVGV  294 (347)
T ss_dssp             TTCCBCCTTEESSCCEEEEEECS-SCE-EEEETTSCEEEESEEEECSCHHHHHTTSSEEESCCCHHHHHHHH-HSCBTTC
T ss_pred             HHhhhcccccccccccccccccC-ccE-EEEECCCCEEEcCEEEeecCHHHHhhcccccCCCCCHHHHHHHH-hcCCccc
Confidence            33455677889999999998653 333 5889999999999999987642210    00      0000000 1111122


Q ss_pred             C----CCCCCCCCceEEeccccccCCccCCcccccchHHHHHHHHHHHHHHHhc
Q 012165          308 D----GQFRTRMPGIFAIGDVAAFPLKMYDRTARVEHVDHARQSAQHCIKALLS  357 (469)
Q Consensus       308 d----~~~~t~~~~Vfa~GD~a~~~~~~~~~~~~~~~~~~A~~~a~~~a~~i~~  357 (469)
                      +    +.++++.++||++||++....+.        ..+.|..+|..+|+.|++
T Consensus       295 ~~~~~~~~~~~~~~v~~~GD~~~~~~~~--------~~~gA~~sG~~aA~~l~~  340 (347)
T d1b5qa1         295 NRYEYDQLRAPVGRVYFTGEHTSEHYNG--------YVHGAYLSGIDSAEILIN  340 (347)
T ss_dssp             CHHHHHHHHCCBTTEEECSGGGCSSCTT--------SHHHHHHHHHHHHHHHHH
T ss_pred             cccchhhcccccCCEEEEEccccCcCCC--------HHHHHHHHHHHHHHHHHH
Confidence            2    23567889999999998753321        334477777877777754

>d1nhpa1 c.3.1.5 (A:1-119,A:243-321) NADH peroxidase {Enterococcus faecalis [TaxId: 1351]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: NADH peroxidase
species: Enterococcus faecalis [TaxId: 1351]

Probab=98.55  E-value=1.9e-07  Score=80.73  Aligned_cols=82  Identities=21%  Similarity=0.315  Sum_probs=63.4

Q ss_pred             eEEEEcCChHHHHHHHHHHhCCC--eEe-------------------------------eeHHHHHHcCcEEEcCCeEEE
Q 012165          209 KVVVVGGGYIGMEVAAAAVGWKL--DTT-------------------------------RYEQLYQQNGVKFVKGASIKN  255 (469)
Q Consensus       209 ~vvVvG~G~~g~e~A~~l~~~g~--~v~-------------------------------~~~~~l~~~gV~~~~~~~v~~  255 (469)
                      +|+|||||++|+|+|..|++++.  +++                               ...+.++++||+++++++|++
T Consensus         2 KVvIIGgG~~G~e~A~~l~~~~~~~~V~v~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~l~~~gi~v~~~~~V~~   81 (198)
T d1nhpa1           2 KVIVLGSSHGGYEAVEELLNLHPDAEIQWYEKGDFISFLSAGMQLYLEGKVKDVNSVRYMTGEKMESRGVNVFSNTEITA   81 (198)
T ss_dssp             EEEEECSSHHHHHHHHHHHHHCTTSEEEEEESSSSSSBCGGGHHHHHTTSSCCGGGSBSCCHHHHHHTTCEEEETEEEEE
T ss_pred             EEEEECCcHHHHHHHHHHHhcCCCCeEEEEeCCCcccccccCcchhhcccccchHHHHHhhHHHHHHCCcEEEEeeceee
Confidence            69999999999999999988755  343                               124568899999999999999


Q ss_pred             EEeCCCCcEEEEEcCCCC--EEeCCEEEEccCCccCCc
Q 012165          256 LEAGSDGRVAAVKLEDGS--TIDADTIVIGIGAKPTVS  291 (469)
Q Consensus       256 i~~~~~~~v~~v~~~~g~--~i~~D~vi~a~G~~p~~~  291 (469)
                      ++.+ +..+..-.+.+|+  ++++|.+|+++|..|+..
T Consensus        82 i~~~-~~~v~~~~~~~g~~~~~~~D~li~a~G~~~~~~  118 (198)
T d1nhpa1          82 IQPK-EHQVTVKDLVSGEERVENYDKLIISPGAVPFEL  118 (198)
T ss_dssp             EETT-TTEEEEEETTTCCEEEEECSEEEECCCEEECCC
T ss_pred             Eeec-cccceeeecccccccccccceeeEeecceeecc
Confidence            9853 3444322345554  588999999999998643

>d1h6va1 c.3.1.5 (A:10-170,A:293-366) Mammalian thioredoxin reductase {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Mammalian thioredoxin reductase
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=98.52  E-value=1.7e-08  Score=89.97  Aligned_cols=36  Identities=17%  Similarity=0.334  Sum_probs=32.9

Q ss_pred             CCcEEEEcCcHHHHHHHHHHHHcCCCCCcEEEEcCCCCC
Q 012165           51 NREFVIVGGGNAAGYAARTFVEHGMADGRLCIVSKEAYA   89 (469)
Q Consensus        51 ~~~vvIIGgG~AGl~aA~~L~~~g~~~~~V~vie~~~~~   89 (469)
                      .|||+||||||||++||.++++.|.   +|+|||+.+..
T Consensus         3 dYDviVIG~GpaGl~aA~~aa~~G~---kV~viE~~~~~   38 (235)
T d1h6va1           3 DFDLIIIGGGSGGLAAAKEAAKFDK---KVMVLDFVTPT   38 (235)
T ss_dssp             SEEEEEECCSHHHHHHHHHHGGGCC---CEEEECCCCCC
T ss_pred             cCCEEEECCCHHHHHHHHHHHHCCC---eEEEEeccCCC
Confidence            5899999999999999999999998   79999987654

>d1mo9a1 c.3.1.5 (A:2-192,A:314-383) NADH-dependent 2-ketopropyl coenzyme M oxidoreductase/carboxylase {Xanthobacter sp., py2 [TaxId: 35809]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: NADH-dependent 2-ketopropyl coenzyme M oxidoreductase/carboxylase
species: Xanthobacter sp., py2 [TaxId: 35809]

Probab=98.48  E-value=3.4e-08  Score=89.56  Aligned_cols=39  Identities=21%  Similarity=0.389  Sum_probs=34.7

Q ss_pred             CCCCCcEEEEcCcHHHHHHHHHHHHcCCCCCcEEEEcCCCCC
Q 012165           48 ANENREFVIVGGGNAAGYAARTFVEHGMADGRLCIVSKEAYA   89 (469)
Q Consensus        48 ~~~~~~vvIIGgG~AGl~aA~~L~~~g~~~~~V~vie~~~~~   89 (469)
                      ....||+||||||++|+.+|..+++.|.   ++++||+.+..
T Consensus        39 ~~k~yDvvVIGgG~aG~~aA~~~a~~G~---kv~vve~~~~l   77 (261)
T d1mo9a1          39 DPREYDAIFIGGGAAGRFGSAYLRAMGG---RQLIVDRWPFL   77 (261)
T ss_dssp             CCSCBSEEEECCSHHHHHHHHHHHHTTC---CEEEEESSSSS
T ss_pred             CCccCCEEEECCCHHHHHHHHHHHHCCC---eEEEEeccCcc
Confidence            3567899999999999999999999987   79999987764

>d1w4xa1 c.3.1.5 (A:10-154,A:390-542) Phenylacetone monooxygenase {Thermobifida fusca [TaxId: 2021]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Phenylacetone monooxygenase
species: Thermobifida fusca [TaxId: 2021]

Probab=98.47  E-value=5.1e-07  Score=83.09  Aligned_cols=80  Identities=14%  Similarity=0.162  Sum_probs=68.3

Q ss_pred             CeEEEEcCChHHHHHHHHHHhCCCeEe-----------------------------------------------------
Q 012165          208 KKVVVVGGGYIGMEVAAAAVGWKLDTT-----------------------------------------------------  234 (469)
Q Consensus       208 ~~vvVvG~G~~g~e~A~~l~~~g~~v~-----------------------------------------------------  234 (469)
                      -+|+|||+|++|+-+|..|.+.|.+++                                                     
T Consensus         8 ~dV~IIGAG~sGl~~a~~L~~~G~~v~i~Ek~~~iGGtW~~n~ypg~~~d~~~~~~~~s~~~~~~~~~~~~~~~p~~~e~   87 (298)
T d1w4xa1           8 VDVLVVGAGFSGLYALYRLRELGRSVHVIETAGDVGGVWYWNRYPGARCDIESIEYCYSFSEEVLQEWNWTERYASQPEI   87 (298)
T ss_dssp             EEEEEECCSHHHHHHHHHHHHTTCCEEEECSSSSSCTHHHHCCCTTCBCSSCTTTSSCCSCHHHHHHCCCCBSSCBHHHH
T ss_pred             CCEEEECccHHHHHHHHHHHhCCCCEEEEEcCCCcccccccCCCCCceeccccccccccccccccCCCCCccccCccchH
Confidence            369999999999999999999998886                                                     


Q ss_pred             --eeHHHHHHcCc--EEEcCCeEEEEEeCCCCcEEEEEcCCCCEEeCCEEEEccCCc
Q 012165          235 --RYEQLYQQNGV--KFVKGASIKNLEAGSDGRVAAVKLEDGSTIDADTIVIGIGAK  287 (469)
Q Consensus       235 --~~~~~l~~~gV--~~~~~~~v~~i~~~~~~~v~~v~~~~g~~i~~D~vi~a~G~~  287 (469)
                        .+++..++.++  .++++++|++++.+++...-.|.+.++.++.+|.||+|+|.-
T Consensus        88 ~~Yl~~~a~~~~L~~~I~f~t~V~~~~~de~~~~W~V~~~~~~~~~~~~~i~atG~l  144 (298)
T d1w4xa1          88 LRYINFVADKFDLRSGITFHTTVTAAAFDEATNTWTVDTNHGDRIRARYLIMASGQL  144 (298)
T ss_dssp             HHHHHHHHHHTTGGGGEECSCCEEEEEEETTTTEEEEEETTCCEEEEEEEEECCCSC
T ss_pred             HHHHHHHHHHcCCcccccCCcEEEEEEEecCCCceeeccccccccccceEEEeeccc
Confidence              45666777788  589999999998665555567899999999999999999964

>d3grsa1 c.3.1.5 (A:18-165,A:291-363) Glutathione reductase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Glutathione reductase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.45  E-value=8.2e-08  Score=84.45  Aligned_cols=35  Identities=26%  Similarity=0.517  Sum_probs=32.2

Q ss_pred             CCcEEEEcCcHHHHHHHHHHHHcCCCCCcEEEEcCCCC
Q 012165           51 NREFVIVGGGNAAGYAARTFVEHGMADGRLCIVSKEAY   88 (469)
Q Consensus        51 ~~~vvIIGgG~AGl~aA~~L~~~g~~~~~V~vie~~~~   88 (469)
                      +||++||||||||++||.++++.|.   +|+|||++..
T Consensus         3 ~yDviIIG~GpaG~~aA~~aar~G~---kV~vIEk~~~   37 (221)
T d3grsa1           3 SYDYLVIGGGSGGLASARRAAELGA---RAAVVESHKL   37 (221)
T ss_dssp             ECSEEEECCSHHHHHHHHHHHHTTC---CEEEEESSCT
T ss_pred             ccCEEEECCCHHHHHHHHHHHHCCC---EEEEEeccCC
Confidence            5899999999999999999999987   7999998754

>d1xdia1 c.3.1.5 (A:2-161,A:276-348) Dihydrolipoamide dehydrogenase {Mycobacterium tuberculosis [TaxId: 1773]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Dihydrolipoamide dehydrogenase
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=98.44  E-value=2.9e-08  Score=88.40  Aligned_cols=37  Identities=22%  Similarity=0.258  Sum_probs=32.2

Q ss_pred             CCcEEEEcCcHHHHHHHHHHHHcCCCCCcEEEEcCCC
Q 012165           51 NREFVIVGGGNAAGYAARTFVEHGMADGRLCIVSKEA   87 (469)
Q Consensus        51 ~~~vvIIGgG~AGl~aA~~L~~~g~~~~~V~vie~~~   87 (469)
                      +.+|+||||||||++||.++++.+....+|++||++.
T Consensus         1 ~~~viVIG~GpaG~~aA~~aa~~~~~~~~V~liEk~~   37 (233)
T d1xdia1           1 VTRIVILGGGPAGYEAALVAATSHPETTQVTVIDCDG   37 (233)
T ss_dssp             CEEEEEECCSHHHHHHHHHHHHHCTTTEEEEEEESSC
T ss_pred             CcEEEEECCCHHHHHHHHHHHHcCCCCCEEEEEecCC
Confidence            3689999999999999999999887445899999865

>d1ryia1 c.3.1.2 (A:1-218,A:307-364) Glycine oxidase ThiO {Bacillus sp. [TaxId: 1409]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD-linked reductases, N-terminal domain
domain: Glycine oxidase ThiO
species: Bacillus sp. [TaxId: 1409]

Probab=98.41  E-value=2.5e-07  Score=84.14  Aligned_cols=65  Identities=22%  Similarity=0.373  Sum_probs=51.4

Q ss_pred             eeHHHHHHcCcEEEcCCeEEEEEeCCCCcEEEEEcCCCCEEeCCEEEEccCCccCCchhhhcCCcccCC
Q 012165          235 RYEQLYQQNGVKFVKGASIKNLEAGSDGRVAAVKLEDGSTIDADTIVIGIGAKPTVSPFERVGLNSSVG  303 (469)
Q Consensus       235 ~~~~~l~~~gV~~~~~~~v~~i~~~~~~~v~~v~~~~g~~i~~D~vi~a~G~~p~~~~~~~~gl~~~~g  303 (469)
                      .+.+.+++.|++++.+++|++|+.+  +.+..|.+++| ++.||.||+|+|.... .+++.+|+...++
T Consensus       156 ~l~~~~~~~Gv~i~~~~~V~~i~~~--~~~~~V~t~~g-~i~a~~vV~AaG~~s~-~l~~~~G~~~~~~  220 (276)
T d1ryia1         156 AYVKAAKMLGAEIFEHTPVLHVERD--GEALFIKTPSG-DVWANHVVVASGVWSG-MFFKQLGLNNADG  220 (276)
T ss_dssp             HHHHHHHHTTCEEETTCCCCEEECS--SSSEEEEETTE-EEEEEEEEECCGGGTH-HHHHHTTCCCCSS
T ss_pred             HHHHHHHHcCCEEecceEEEeEEee--cceEEEecCCe-EEEcCEEEECCCccHH-HHHhhcCCCcccc
Confidence            3456678899999999999999854  44457888887 6999999999998654 5788888876433

>d1gtea3 c.3.1.1 (A:288-440) Dihydropyrimidine dehydrogenase, domain 3 {Pig (Sus scrofa) [TaxId: 9823]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: C-terminal domain of adrenodoxin reductase-like
domain: Dihydropyrimidine dehydrogenase, domain 3
species: Pig (Sus scrofa) [TaxId: 9823]

Probab=98.38  E-value=8.3e-07  Score=72.84  Aligned_cols=79  Identities=23%  Similarity=0.374  Sum_probs=58.6

Q ss_pred             cCCeEEEEcCChHHHHHHHHHHhCCCeEe---------------eeHHHHHHcCcEEEcCCeEEEEEeCCCCcEEEEEc-
Q 012165          206 KAKKVVVVGGGYIGMEVAAAAVGWKLDTT---------------RYEQLYQQNGVKFVKGASIKNLEAGSDGRVAAVKL-  269 (469)
Q Consensus       206 ~~~~vvVvG~G~~g~e~A~~l~~~g~~v~---------------~~~~~l~~~gV~~~~~~~v~~i~~~~~~~v~~v~~-  269 (469)
                      .+++|+|||||.+|+|+|..+.++|.+..               .....+...+++++....+.++... ++.+..+.. 
T Consensus        44 ~~~kVvVIGGGdtA~D~A~~a~r~GA~~V~vi~rr~~~~~~a~~~~~~~a~~~~~~~~~~~~~~ei~~~-~~~~~~v~~~  122 (153)
T d1gtea3          44 IRGAVIVLGAGDTAFDCATSALRCGARRVFLVFRKGFVNIRAVPEEVELAKEEKCEFLPFLSPRKVIVK-GGRIVAVQFV  122 (153)
T ss_dssp             CCSEEEEECSSHHHHHHHHHHHHTTCSEEEEECSSCGGGCCSCHHHHHHHHHTTCEEECSEEEEEEEEE-TTEEEEEEEE
T ss_pred             CCCEEEEECCChhHHHHHHHHHHcCCcceeEEEeCChhhhccchhheeecccccceeEeccccEEEEec-CCceEEEEEE
Confidence            35799999999999999999999987643               1223456789999999888888753 444433332 


Q ss_pred             -----CCC---------CEEeCCEEEEccC
Q 012165          270 -----EDG---------STIDADTIVIGIG  285 (469)
Q Consensus       270 -----~~g---------~~i~~D~vi~a~G  285 (469)
                           ++|         .+++||.||+|+|
T Consensus       123 ~~e~d~~G~~~~~~g~e~~i~aD~V~~AiG  152 (153)
T d1gtea3         123 RTEQDETGKWNEDEDQIVHLKADVVISAFG  152 (153)
T ss_dssp             EEEECTTSCEEEEEEEEEEEECSEEEECSC
T ss_pred             EeeECCCCCEecCCCCEEEEECCEEEECcC
Confidence                 222         3589999999998

>d1d4ca2 c.3.1.4 (A:103-359,A:506-570) Flavocytochrome c3 (respiratory fumarate reductase) {Shewanella putrefaciens [TaxId: 24]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: Succinate dehydrogenase/fumarate reductase flavoprotein N-terminal domain
domain: Flavocytochrome c3 (respiratory fumarate reductase)
species: Shewanella putrefaciens [TaxId: 24]

Probab=98.35  E-value=5.2e-07  Score=84.17  Aligned_cols=38  Identities=29%  Similarity=0.448  Sum_probs=33.8

Q ss_pred             CCCCcEEEEcCcHHHHHHHHHHHHcCCCCCcEEEEcCCCCC
Q 012165           49 NENREFVIVGGGNAAGYAARTFVEHGMADGRLCIVSKEAYA   89 (469)
Q Consensus        49 ~~~~~vvIIGgG~AGl~aA~~L~~~g~~~~~V~vie~~~~~   89 (469)
                      ...+||+|||+|+||++||.+|+++|.   +|+|||+.+..
T Consensus        21 ~et~DVvVIG~G~aGl~aA~~la~~G~---~V~llEk~~~~   58 (322)
T d1d4ca2          21 KETTDVVIIGSGGAGLAAAVSARDAGA---KVILLEKEPIP   58 (322)
T ss_dssp             CEECSEEEECSSHHHHHHHHHHHTTTC---CEEEECSSSSS
T ss_pred             CCcceEEEECcCHHHHHHHHHHHHCCC---cEEEEeCCCCC
Confidence            345899999999999999999999997   79999998653

>d2bcgg1 c.3.1.3 (G:5-301) Guanine nucleotide dissociation inhibitor, GDI {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: GDI-like N domain
domain: Guanine nucleotide dissociation inhibitor, GDI
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=98.35  E-value=1.8e-07  Score=83.58  Aligned_cols=53  Identities=15%  Similarity=0.193  Sum_probs=41.0

Q ss_pred             eeHHHHHHcCcEEEcCCeEEEEEeCC-CCcEEEEEcCCCCEEeCCEEEEccCCcc
Q 012165          235 RYEQLYQQNGVKFVKGASIKNLEAGS-DGRVAAVKLEDGSTIDADTIVIGIGAKP  288 (469)
Q Consensus       235 ~~~~~l~~~gV~~~~~~~v~~i~~~~-~~~v~~v~~~~g~~i~~D~vi~a~G~~p  288 (469)
                      .+.+.+++.|+++++++.|++|..++ ++++..| +.+|+++.||.||.....-|
T Consensus       241 ~l~~~~~~~G~~i~~~~~V~~I~~~~~~~~v~~v-~~~g~~~~ad~VI~~~s~~~  294 (297)
T d2bcgg1         241 GFARLSAIYGGTYMLDTPIDEVLYKKDTGKFEGV-KTKLGTFKAPLVIADPTYFP  294 (297)
T ss_dssp             HHHHHHHHTTCEEECSCCCCEEEEETTTTEEEEE-EETTEEEECSCEEECGGGCG
T ss_pred             HHHHHHHhcCCEEEeCCEeeEEEEECCCCEEEEE-EcCCEEEECCEEEEChhhcc
Confidence            45677889999999999999997544 4556544 57888999999998655444

>d1ps9a3 c.4.1.1 (A:331-465,A:628-671) 2,4-dienoyl-CoA reductase, middle domain {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: Nucleotide-binding domain
superfamily: Nucleotide-binding domain
family: N-terminal domain of adrenodoxin reductase-like
domain: 2,4-dienoyl-CoA reductase, middle domain
species: Escherichia coli [TaxId: 562]

Probab=98.35  E-value=3e-07  Score=77.50  Aligned_cols=70  Identities=21%  Similarity=0.331  Sum_probs=58.1

Q ss_pred             hcCCeEEEEcCChHHHHHHHHHHhCCCeEe-----------------------------eeHHHHHHcCcEEEcCCeEEE
Q 012165          205 EKAKKVVVVGGGYIGMEVAAAAVGWKLDTT-----------------------------RYEQLYQQNGVKFVKGASIKN  255 (469)
Q Consensus       205 ~~~~~vvVvG~G~~g~e~A~~l~~~g~~v~-----------------------------~~~~~l~~~gV~~~~~~~v~~  255 (469)
                      ..+|+|+|||+|+.|++.|..|+++|.+|+                             .+.+.+++.||++++++.|+.
T Consensus        41 ~~~k~V~IIGaGPAGL~AA~~la~~G~~Vtl~E~~~~~GG~l~~~~~~p~~~~~~~~~~~~~~~~~~~gV~i~l~~~Vt~  120 (179)
T d1ps9a3          41 VQKKNLAVVGAGPAGLAFAINAAARGHQVTLFDAHSEIGGQFNIAKQIPGKEEFYETLRYYRRMIEVTGVTLKLNHTVTA  120 (179)
T ss_dssp             SSCCEEEEECCSHHHHHHHHHHHTTTCEEEEEESSSSSCTTHHHHTTSTTCTTHHHHHHHHHHHHHHHTCEEEESCCCCS
T ss_pred             CCCcEEEEECccHHHHHHHHHHHhhccceEEEeccCccCceEEEEEeCcccchHHHHHHHHHHhhhcCCeEEEeCCEEcc
Confidence            467999999999999999999999999998                             456677889999999976531


Q ss_pred             EEeCCCCcEEEEEcCCCCEEeCCEEEEccCCccCC
Q 012165          256 LEAGSDGRVAAVKLEDGSTIDADTIVIGIGAKPTV  290 (469)
Q Consensus       256 i~~~~~~~v~~v~~~~g~~i~~D~vi~a~G~~p~~  290 (469)
                                     + ....+|.||+|+|..|..
T Consensus       121 ---------------~-~~~~~d~vilAtG~~~~~  139 (179)
T d1ps9a3         121 ---------------D-QLQAFDETILASGIPNRA  139 (179)
T ss_dssp             ---------------S-SSCCSSEEEECCCEECCT
T ss_pred             ---------------c-ccccceeEEEeecCCCcc
Confidence                           1 135789999999998864

>d1vdca2 c.3.1.5 (A:118-243) Thioredoxin reductase {Mouse-ear cress (Arabidopsis thaliana) [TaxId: 3702]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Thioredoxin reductase
species: Mouse-ear cress (Arabidopsis thaliana) [TaxId: 3702]

Probab=98.31  E-value=1.3e-06  Score=69.44  Aligned_cols=95  Identities=16%  Similarity=0.270  Sum_probs=71.4

Q ss_pred             CcEEEecCHHHHHHHHHhhhcCCeEEEEcCChHHHHHHHHHHhCCCeEe-------------eeHHHHHHcCcEEEcCCe
Q 012165          186 PGVHYIRDVADADALISSLEKAKKVVVVGGGYIGMEVAAAAVGWKLDTT-------------RYEQLYQQNGVKFVKGAS  252 (469)
Q Consensus       186 ~~v~~~~~~~~~~~~~~~~~~~~~vvVvG~G~~g~e~A~~l~~~g~~v~-------------~~~~~l~~~gV~~~~~~~  252 (469)
                      .|+.|+.   .++.. ..+.++|+|+|||+|.+++|.|.+|++...+|+             ..++..+..+|+++++++
T Consensus        17 kGVsyca---~CDg~-a~~frgk~V~VvGgGdsA~e~A~~L~~~a~~V~li~r~~~~ra~~~~~~~l~~~~nI~v~~~~~   92 (130)
T d1vdca2          17 RGISACA---VCDGA-APIFRNKPLAVIGGGDSAMEEANFLTKYGSKVYIIHRRDAFRASKIMQQRALSNPKIDVIWNSS   92 (130)
T ss_dssp             TTEESCH---HHHTT-SGGGTTSEEEEECCSHHHHHHHHHHTTTSSEEEEECSSSSCCSCHHHHHHHHTCTTEEEECSEE
T ss_pred             CcEEEEE---EecCc-hHHhCCCEEEEEcCchHHHHHHHHHhCCCCcEEEEEeccccccchhhhhccccCCceEEEeccE
Confidence            6777763   22210 125689999999999999999999999999988             334566667899999999


Q ss_pred             EEEEEeCCC-CcEEEEEcCC---C--CEEeCCEEEEcc
Q 012165          253 IKNLEAGSD-GRVAAVKLED---G--STIDADTIVIGI  284 (469)
Q Consensus       253 v~~i~~~~~-~~v~~v~~~~---g--~~i~~D~vi~a~  284 (469)
                      +.++..++. +.+..+.+.|   |  +++++|-|++++
T Consensus        93 v~~i~Gd~~~~~v~~v~l~~~~tge~~~l~~dGvFVaI  130 (130)
T d1vdca2          93 VVEAYGDGERDVLGGLKVKNVVTGDVSDLKVSGLFFAI  130 (130)
T ss_dssp             EEEEEESSSSSSEEEEEEEETTTCCEEEEECSEEEECS
T ss_pred             EEEEEccCCcccEEEEEEEECCCCCEEEEECCEEEEEC
Confidence            999986432 3466666543   3  579999999874

>d1chua2 c.3.1.4 (A:2-237,A:354-422) L-aspartate oxidase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: Succinate dehydrogenase/fumarate reductase flavoprotein N-terminal domain
domain: L-aspartate oxidase
species: Escherichia coli [TaxId: 562]

Probab=98.30  E-value=4.8e-06  Score=76.69  Aligned_cols=92  Identities=22%  Similarity=0.370  Sum_probs=65.4

Q ss_pred             eHHHHHHcCcEEEcCCeEEEEEeCCC------CcEEEEEc---CCCC--EEeCCEEEEccCCccC-----------C---
Q 012165          236 YEQLYQQNGVKFVKGASIKNLEAGSD------GRVAAVKL---EDGS--TIDADTIVIGIGAKPT-----------V---  290 (469)
Q Consensus       236 ~~~~l~~~gV~~~~~~~v~~i~~~~~------~~v~~v~~---~~g~--~i~~D~vi~a~G~~p~-----------~---  290 (469)
                      +.+..++.+++++.++.+.++..+++      +++.++..   .+++  .+.++.||+|+|--..           +   
T Consensus       144 ~~~~~~~~~v~~~~~~~~~~Li~~~~~~~~~~~rv~Gv~~~~~~~g~~~~~~ak~VilAtGG~~~~~~~~t~~~~~TGDG  223 (305)
T d1chua2         144 VSKALNHPNIRVLERTNAVDLIVSDKIGLPGTRRVVGAWVWNRNKETVETCHAKAVVLATGGASKVYQYTTNPDISSGDG  223 (305)
T ss_dssp             HHHHHHCTTEEEECSEEEEEEEEGGGTTCCSSCBEEEEEEEETTTTEEEEEECSEEEECCCCCGGGSSSBSCGGGCSCHH
T ss_pred             HHHHHhccCcceeceeEEEEEEEEcCcccccCceEEEEEEEeCCCCcEEEEeecceEEeeeccccceeccCCCCceeccc
Confidence            34556778999999999888875432      25667655   3443  4789999999984321           1   


Q ss_pred             -chhhhcCCccc-CCCEEeCCCCCCCCCceEEecccccc
Q 012165          291 -SPFERVGLNSS-VGGIQVDGQFRTRMPGIFAIGDVAAF  327 (469)
Q Consensus       291 -~~~~~~gl~~~-~g~i~Vd~~~~t~~~~Vfa~GD~a~~  327 (469)
                       .++..+|.... -++|.+|.+.+|+.|++||+|+++.-
T Consensus       224 ~~mA~~aGa~l~~m~~iq~~~~g~t~~~g~~a~G~~~~~  262 (305)
T d1chua2         224 IAMAWRAGCRVANCGGVMVDDHGRTDVEGLYAIGEVSYT  262 (305)
T ss_dssp             HHHHHHTTCCEECSCEEECCTTCBCSSBTEEECGGGEEC
T ss_pred             EeeccccceeeEecceeEECCcccCCCCCceecccEEEe
Confidence             02345666653 57899999999999999999998653

>d1kf6a2 c.3.1.4 (A:0-225,A:358-442) Fumarate reductase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: Succinate dehydrogenase/fumarate reductase flavoprotein N-terminal domain
domain: Fumarate reductase
species: Escherichia coli [TaxId: 562]

Probab=98.30  E-value=2.6e-07  Score=85.82  Aligned_cols=36  Identities=25%  Similarity=0.360  Sum_probs=32.3

Q ss_pred             CCcEEEEcCcHHHHHHHHHHHHcCCCCCcEEEEcCCC
Q 012165           51 NREFVIVGGGNAAGYAARTFVEHGMADGRLCIVSKEA   87 (469)
Q Consensus        51 ~~~vvIIGgG~AGl~aA~~L~~~g~~~~~V~vie~~~   87 (469)
                      .+||+|||+|+|||+||.++++.+. ..+|+|+||.+
T Consensus         5 ~~DVlVIG~G~AGl~AA~~a~~~~~-g~~V~lleK~~   40 (311)
T d1kf6a2           5 QADLAIVGAGGAGLRAAIAAAQANP-NAKIALISKVY   40 (311)
T ss_dssp             ECSEEEECCSHHHHHHHHHHHHHCT-TCCEEEEESSC
T ss_pred             ecCEEEECccHHHHHHHHHHHHhCC-CCEEEEEECCC
Confidence            5899999999999999999999864 56899999875

>d1pj5a2 c.3.1.2 (A:4-219,A:339-427) N,N-dimethylglycine oxidase {Arthrobacter globiformis [TaxId: 1665]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD-linked reductases, N-terminal domain
domain: N,N-dimethylglycine oxidase
species: Arthrobacter globiformis [TaxId: 1665]

Probab=98.28  E-value=1e-06  Score=81.27  Aligned_cols=63  Identities=24%  Similarity=0.335  Sum_probs=50.4

Q ss_pred             eeHHHHHHcCcEEEcCCeEEEEEeCCCCcEEEEEcCCCCEEeCCEEEEccCCccCCchhhhcCCcc
Q 012165          235 RYEQLYQQNGVKFVKGASIKNLEAGSDGRVAAVKLEDGSTIDADTIVIGIGAKPTVSPFERVGLNS  300 (469)
Q Consensus       235 ~~~~~l~~~gV~~~~~~~v~~i~~~~~~~v~~v~~~~g~~i~~D~vi~a~G~~p~~~~~~~~gl~~  300 (469)
                      .+.+.+++.|++++.+++|++++.. ++++..|.+++| +++||.||+|+|...+ .+++.+|+..
T Consensus       153 ~l~~~a~~~gv~i~~~~~V~~i~~~-~~~v~~V~T~~g-~i~a~~VV~aaG~~s~-~l~~~~g~~l  215 (305)
T d1pj5a2         153 LLIKRTESAGVTYRGSTTVTGIEQS-GGRVTGVQTADG-VIPADIVVSCAGFWGA-KIGAMIGMAV  215 (305)
T ss_dssp             HHHHHHHHTTCEEECSCCEEEEEEE-TTEEEEEEETTE-EEECSEEEECCGGGHH-HHHHTTTCCC
T ss_pred             hHHhhhhcccccccCCceEEEEEEe-CCEEEEEeccce-eEECCEEEEecchhHH-HHHHHcCCcc
Confidence            3456677899999999999999864 677778888877 6999999999998654 5666666553

>d1rp0a1 c.3.1.6 (A:7-284) Thiazole biosynthetic enzyme Thi4 {Thale cress(Arabidopsis thaliana) [TaxId: 3702]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: Thi4-like
domain: Thiazole biosynthetic enzyme Thi4
species: Thale cress(Arabidopsis thaliana) [TaxId: 3702]

Probab=98.24  E-value=1e-06  Score=80.26  Aligned_cols=39  Identities=21%  Similarity=0.325  Sum_probs=33.8

Q ss_pred             CCCCcEEEEcCcHHHHHHHHHHHH-cCCCCCcEEEEcCCCCCC
Q 012165           49 NENREFVIVGGGNAAGYAARTFVE-HGMADGRLCIVSKEAYAP   90 (469)
Q Consensus        49 ~~~~~vvIIGgG~AGl~aA~~L~~-~g~~~~~V~vie~~~~~~   90 (469)
                      ...+||+|||||+|||+||.+|++ .|+   +|+|+|+.+..+
T Consensus        31 ~~e~DViVIGaGpaGL~aA~~LA~~~G~---~V~vlE~~~~~G   70 (278)
T d1rp0a1          31 YAETDVVVVGAGSAGLSAAYEISKNPNV---QVAIIEQSVSPG   70 (278)
T ss_dssp             HTEEEEEEECCSHHHHHHHHHHHTSTTS---CEEEEESSSSCC
T ss_pred             ccCCCEEEECCCHHHHHHHHHHHHccCC---eEEEEecCCCCC
Confidence            356899999999999999999987 477   899999987654

>d3lada1 c.3.1.5 (A:1-158,A:278-348) Dihydrolipoamide dehydrogenase {Azotobacter vinelandii [TaxId: 354]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Dihydrolipoamide dehydrogenase
species: Azotobacter vinelandii [TaxId: 354]

Probab=98.21  E-value=5.1e-07  Score=79.37  Aligned_cols=38  Identities=16%  Similarity=0.297  Sum_probs=33.9

Q ss_pred             CCCCcEEEEcCcHHHHHHHHHHHHcCCCCCcEEEEcCCCCC
Q 012165           49 NENREFVIVGGGNAAGYAARTFVEHGMADGRLCIVSKEAYA   89 (469)
Q Consensus        49 ~~~~~vvIIGgG~AGl~aA~~L~~~g~~~~~V~vie~~~~~   89 (469)
                      +++|||+|||||||||+||.++++.|.   +|+|||+....
T Consensus         1 ~~kYDviIIGgGpAGl~aA~~aar~G~---~V~viE~~~~~   38 (229)
T d3lada1           1 SQKFDVIVIGAGPGGYVAAIKSAQLGL---KTALIEKYKGK   38 (229)
T ss_dssp             CCCCSEEEECCSHHHHHHHHHHHHHTC---CEEEEECCBCT
T ss_pred             CCcCCEEEECcCHHHHHHHHHHHHCCC---eEEEEecccCC
Confidence            367999999999999999999999997   79999987543

>d1c0pa1 c.4.1.2 (A:999-1193,A:1289-1361) D-aminoacid oxidase, N-terminal domain {Rhodotorula gracilis [TaxId: 5286]}

class: Alpha and beta proteins (a/b)
fold: Nucleotide-binding domain
superfamily: Nucleotide-binding domain
family: D-aminoacid oxidase, N-terminal domain
domain: D-aminoacid oxidase, N-terminal domain
species: Rhodotorula gracilis [TaxId: 5286]

Probab=98.18  E-value=6.3e-07  Score=80.41  Aligned_cols=39  Identities=15%  Similarity=0.324  Sum_probs=34.7

Q ss_pred             CCCCCCcEEEEcCcHHHHHHHHHHHHcCCCCCcEEEEcCCCC
Q 012165           47 FANENREFVIVGGGNAAGYAARTFVEHGMADGRLCIVSKEAY   88 (469)
Q Consensus        47 ~~~~~~~vvIIGgG~AGl~aA~~L~~~g~~~~~V~vie~~~~   88 (469)
                      |+.+++||+|||||++|+++|..|+++|+   +|+|+|++..
T Consensus         2 ~~~~~~kVvVIGaGiaGl~~A~~L~~~G~---~V~vier~~~   40 (268)
T d1c0pa1           2 MMHSQKRVVVLGSGVIGLSSALILARKGY---SVHILARDLP   40 (268)
T ss_dssp             CCCCSCEEEEECCSHHHHHHHHHHHHTTC---EEEEEESSCT
T ss_pred             CCCCCCcEEEECccHHHHHHHHHHHHCCC---CEEEEeCCCC
Confidence            45567899999999999999999999998   7999999753

>d1b5qa1 c.3.1.2 (A:5-293,A:406-463) Polyamine oxidase {Maize (Zea mays) [TaxId: 4577]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD-linked reductases, N-terminal domain
domain: Polyamine oxidase
species: Maize (Zea mays) [TaxId: 4577]

Probab=98.14  E-value=8.2e-07  Score=79.96  Aligned_cols=37  Identities=24%  Similarity=0.357  Sum_probs=32.9

Q ss_pred             CcEEEEcCcHHHHHHHHHHHHcCCCCCcEEEEcCCCCCC
Q 012165           52 REFVIVGGGNAAGYAARTFVEHGMADGRLCIVSKEAYAP   90 (469)
Q Consensus        52 ~~vvIIGgG~AGl~aA~~L~~~g~~~~~V~vie~~~~~~   90 (469)
                      .||+|||||+|||+||..|+++|++  +|+|+|+++..+
T Consensus         1 P~V~IIGaG~aGL~aA~~L~~~G~~--~V~vlE~~~~~G   37 (347)
T d1b5qa1           1 PRVIVVGAGMSGISAAKRLSEAGIT--DLLILEATDHIG   37 (347)
T ss_dssp             CCEEEECCBHHHHHHHHHHHHTTCC--CEEEECSSSSSB
T ss_pred             CCEEEECCcHHHHHHHHHHHhCCCC--cEEEEECCCCCC
Confidence            4899999999999999999999963  699999987654

>d2gf3a1 c.3.1.2 (A:1-217,A:322-385) Sarcosine oxidase {Bacillus sp., strain b0618 [TaxId: 1409]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD-linked reductases, N-terminal domain
domain: Sarcosine oxidase
species: Bacillus sp., strain b0618 [TaxId: 1409]

Probab=98.14  E-value=2.8e-06  Score=77.17  Aligned_cols=63  Identities=17%  Similarity=0.453  Sum_probs=50.1

Q ss_pred             eeHHHHHHcCcEEEcCCeEEEEEeCCCCcEEEEEcCCCCEEeCCEEEEccCCccCCchhhhcCCccc
Q 012165          235 RYEQLYQQNGVKFVKGASIKNLEAGSDGRVAAVKLEDGSTIDADTIVIGIGAKPTVSPFERVGLNSS  301 (469)
Q Consensus       235 ~~~~~l~~~gV~~~~~~~v~~i~~~~~~~v~~v~~~~g~~i~~D~vi~a~G~~p~~~~~~~~gl~~~  301 (469)
                      .+.+.+++.|++++.+++|++++..+ +.+ .|.+++| ++.||.||+|+|...+ .++..+|+...
T Consensus       155 ~l~~~a~~~Gv~i~~~~~V~~i~~~~-~~v-~V~t~~g-~i~a~~VViAaG~~s~-~l~~~lg~~~~  217 (281)
T d2gf3a1         155 AYRELAEARGAKVLTHTRVEDFDISP-DSV-KIETANG-SYTADKLIVSMGAWNS-KLLSKLNLDIP  217 (281)
T ss_dssp             HHHHHHHHTTCEEECSCCEEEEEECS-SCE-EEEETTE-EEEEEEEEECCGGGHH-HHGGGGTEECC
T ss_pred             ccccccccccccccCCcEEEEEEEEC-CEE-EEEECCc-EEEcCEEEECCCCcch-hhHHhcCCccc
Confidence            44667788999999999999999754 444 5888887 6999999999997654 57777777654

>d2dw4a2 c.3.1.2 (A:274-654,A:764-831) Lysine-specific histone demethylase 1, LSD1 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD-linked reductases, N-terminal domain
domain: Lysine-specific histone demethylase 1, LSD1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.13  E-value=9.3e-07  Score=82.80  Aligned_cols=40  Identities=20%  Similarity=0.323  Sum_probs=35.8

Q ss_pred             CCCCcEEEEcCcHHHHHHHHHHHHcCCCCCcEEEEcCCCCCCC
Q 012165           49 NENREFVIVGGGNAAGYAARTFVEHGMADGRLCIVSKEAYAPY   91 (469)
Q Consensus        49 ~~~~~vvIIGgG~AGl~aA~~L~~~g~~~~~V~vie~~~~~~~   91 (469)
                      .+++||+|||||+|||+||..|+++|+   +|+|+|+++..+.
T Consensus         3 ~~~~kViVIGaG~aGL~aA~~L~~~G~---~V~VlEa~~r~GG   42 (449)
T d2dw4a2           3 KKTGKVIIIGSGVSGLAAARQLQSFGM---DVTLLEARDRVGG   42 (449)
T ss_dssp             SCCCEEEEECCBHHHHHHHHHHHHTTC---EEEEECSSSSSBT
T ss_pred             CCCCcEEEECCCHHHHHHHHHHHhCCC---CEEEEeCCCCCcc
Confidence            456789999999999999999999998   7999999987654

>d1seza1 c.3.1.2 (A:13-329,A:442-497) Protoporphyrinogen oxidase {Tobacco (Nicotiana tabacum) [TaxId: 4097]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD-linked reductases, N-terminal domain
domain: Protoporphyrinogen oxidase
species: Tobacco (Nicotiana tabacum) [TaxId: 4097]

Probab=98.12  E-value=8.3e-07  Score=81.71  Aligned_cols=37  Identities=22%  Similarity=0.321  Sum_probs=33.9

Q ss_pred             CcEEEEcCcHHHHHHHHHHHHcCCCCCcEEEEcCCCCCCC
Q 012165           52 REFVIVGGGNAAGYAARTFVEHGMADGRLCIVSKEAYAPY   91 (469)
Q Consensus        52 ~~vvIIGgG~AGl~aA~~L~~~g~~~~~V~vie~~~~~~~   91 (469)
                      |+|+|||||+|||+||.+|++.|+   +|+|+|+++..+.
T Consensus         2 KkV~IIGaG~aGL~aA~~La~~G~---~V~vlE~~~~~GG   38 (373)
T d1seza1           2 KRVAVIGAGVSGLAAAYKLKIHGL---NVTVFEAEGKAGG   38 (373)
T ss_dssp             CEEEEECCSHHHHHHHHHHHTTSC---EEEEECSSSSSCS
T ss_pred             CEEEEECcCHHHHHHHHHHHhCCC---CEEEEeCCCCCcC
Confidence            689999999999999999999998   8999999887653

>d1i8ta1 c.4.1.3 (A:1-244,A:314-367) UDP-galactopyranose mutase, N-terminal domain {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: Nucleotide-binding domain
superfamily: Nucleotide-binding domain
family: UDP-galactopyranose mutase, N-terminal domain
domain: UDP-galactopyranose mutase, N-terminal domain
species: Escherichia coli [TaxId: 562]

Probab=98.11  E-value=7.8e-07  Score=81.97  Aligned_cols=38  Identities=16%  Similarity=0.250  Sum_probs=34.9

Q ss_pred             CCcEEEEcCcHHHHHHHHHHHHcCCCCCcEEEEcCCCCCCC
Q 012165           51 NREFVIVGGGNAAGYAARTFVEHGMADGRLCIVSKEAYAPY   91 (469)
Q Consensus        51 ~~~vvIIGgG~AGl~aA~~L~~~g~~~~~V~vie~~~~~~~   91 (469)
                      |+||||||||+||++||+.|++.|+   +|+|+|+.++.+.
T Consensus         1 M~dv~IIGaG~sGl~~A~~L~~~g~---~V~iiEk~~~iGG   38 (298)
T d1i8ta1           1 MYDYIIVGSGLFGAVCANELKKLNK---KVLVIEKRNHIGG   38 (298)
T ss_dssp             CEEEEEECCSHHHHHHHHHHGGGTC---CEEEECSSSSSSG
T ss_pred             CccEEEECCcHHHHHHHHHHHhCCC---cEEEEECCCCccc
Confidence            5899999999999999999999987   7999999988754

>d1gtea4 c.4.1.1 (A:184-287,A:441-532) Dihydropyrimidine dehydrogenase, domain 2 {Pig (Sus scrofa) [TaxId: 9823]}

class: Alpha and beta proteins (a/b)
fold: Nucleotide-binding domain
superfamily: Nucleotide-binding domain
family: N-terminal domain of adrenodoxin reductase-like
domain: Dihydropyrimidine dehydrogenase, domain 2
species: Pig (Sus scrofa) [TaxId: 9823]

Probab=98.11  E-value=1.1e-06  Score=75.28  Aligned_cols=37  Identities=22%  Similarity=0.405  Sum_probs=33.2

Q ss_pred             CCcEEEEcCcHHHHHHHHHHHHcCCCCCcEEEEcCCCCC
Q 012165           51 NREFVIVGGGNAAGYAARTFVEHGMADGRLCIVSKEAYA   89 (469)
Q Consensus        51 ~~~vvIIGgG~AGl~aA~~L~~~g~~~~~V~vie~~~~~   89 (469)
                      +++|+|||||++||+||.+|+++|++  +|+|+|+.+..
T Consensus         4 ~~kVaIIGaGpaGl~aA~~l~~~G~~--~V~v~E~~~~~   40 (196)
T d1gtea4           4 SAKIALLGAGPASISCASFLARLGYS--DITIFEKQEYV   40 (196)
T ss_dssp             GCCEEEECCSHHHHHHHHHHHHTTCC--CEEEEESSSSC
T ss_pred             CCEEEEECChHHHHHHHHHHHHCCCC--eEEEEEecCcc
Confidence            47999999999999999999999973  59999998764

>d1v59a1 c.3.1.5 (A:1-160,A:283-355) Dihydrolipoamide dehydrogenase {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Dihydrolipoamide dehydrogenase
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=98.09  E-value=6.4e-07  Score=79.09  Aligned_cols=38  Identities=32%  Similarity=0.419  Sum_probs=34.0

Q ss_pred             CCCCcEEEEcCcHHHHHHHHHHHHcCCCCCcEEEEcCCCCC
Q 012165           49 NENREFVIVGGGNAAGYAARTFVEHGMADGRLCIVSKEAYA   89 (469)
Q Consensus        49 ~~~~~vvIIGgG~AGl~aA~~L~~~g~~~~~V~vie~~~~~   89 (469)
                      .++|||+||||||||++||.++++.|.   +|+|||+.+..
T Consensus         3 ~~~yDviVIG~GpAGl~aA~~aa~~G~---kV~lie~~~~~   40 (233)
T d1v59a1           3 NKSHDVVIIGGGPAGYVAAIKAAQLGF---NTACVEKRGKL   40 (233)
T ss_dssp             EEEEEEEEECCSHHHHHHHHHHHHTTC---CEEEEESSSSS
T ss_pred             CcccCEEEECCCHHHHHHHHHHHHCCC---cEEEEEecCCc
Confidence            456999999999999999999999987   79999987654

>d1djqa2 c.3.1.1 (A:490-645) Trimethylamine dehydrogenase, C-terminal domain {Methylophilus methylotrophus, w3a1 [TaxId: 17]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: C-terminal domain of adrenodoxin reductase-like
domain: Trimethylamine dehydrogenase, C-terminal domain
species: Methylophilus methylotrophus, w3a1 [TaxId: 17]

Probab=98.06  E-value=3.7e-06  Score=69.28  Aligned_cols=76  Identities=18%  Similarity=0.149  Sum_probs=54.5

Q ss_pred             CCcEEEE--cCcHHHHHHHHHHHHcCCCCCcEEEEcCCCCCCCCCCCCcccccCCCCCCCCCCCCCccccCCCCCCCCHh
Q 012165           51 NREFVIV--GGGNAAGYAARTFVEHGMADGRLCIVSKEAYAPYERPALTKGYLFPLDKKPARLPGFHTCVGSGGERQTPE  128 (469)
Q Consensus        51 ~~~vvII--GgG~AGl~aA~~L~~~g~~~~~V~vie~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  128 (469)
                      ...++|+  |||+-|+.+|..|+++|.   +||++++.+....      . . .+     ..            ......
T Consensus        39 ~~~vvi~d~ggg~ig~e~A~~la~~G~---~Vtlv~~~~~~~~------~-~-~~-----~~------------~~~~~~   90 (156)
T d1djqa2          39 GKRVVILNADTYFMAPSLAEKLATAGH---EVTIVSGVHLANY------M-H-FT-----LE------------YPNMMR   90 (156)
T ss_dssp             CSEEEEEECCCSSHHHHHHHHHHHTTC---EEEEEESSCTTTH------H-H-HT-----TC------------HHHHHH
T ss_pred             CCceEEEecCCChHHHHHHHHHHHcCC---eEEEEecCCcccc------c-c-ch-----hH------------HHHHHH
Confidence            4556665  999999999999999997   8999998764311      0 1 00     00            113456


Q ss_pred             HHHHCCcEEEeCCcEEEEeCCCcEEE
Q 012165          129 WYKEKGIEMIYQDPVTSIDIEKQTLI  154 (469)
Q Consensus       129 ~~~~~~i~~~~~~~v~~id~~~~~v~  154 (469)
                      .+.+.|++++.++++.+++.+...+.
T Consensus        91 ~l~~~GV~i~~~~~v~~i~~~~v~l~  116 (156)
T d1djqa2          91 RLHELHVEELGDHFCSRIEPGRMEIY  116 (156)
T ss_dssp             HHHHTTCEEEETEEEEEEETTEEEEE
T ss_pred             HHhhccceEEeccEEEEecCcceEEE
Confidence            67889999999999999987654443

>d1ps9a2 c.3.1.1 (A:466-627) 2,4-dienoyl-CoA reductase, C-terminal domain {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: C-terminal domain of adrenodoxin reductase-like
domain: 2,4-dienoyl-CoA reductase, C-terminal domain
species: Escherichia coli [TaxId: 562]

Probab=98.05  E-value=7.4e-06  Score=67.81  Aligned_cols=45  Identities=18%  Similarity=0.307  Sum_probs=35.9

Q ss_pred             HhHHHHCCcEEEeCCcEEEEeCCCcEEEeCCCe-EEEeccEEeccC
Q 012165          127 PEWYKEKGIEMIYQDPVTSIDIEKQTLITNSGK-LLKYGSLIVATG  171 (469)
Q Consensus       127 ~~~~~~~~i~~~~~~~v~~id~~~~~v~~~~g~-~~~yd~lVlAtG  171 (469)
                      ...++..+++++.++++..++.+...+...+.+ .+++|.+|+|+|
T Consensus       115 ~~~~~~~gv~~~~~~~v~~i~~~gv~~~~~g~e~~i~aD~Vv~A~G  160 (162)
T d1ps9a2         115 RTTLLSRGVKMIPGVSYQKIDDDGLHVVINGETQVLAVDNVVICAG  160 (162)
T ss_dssp             HHHHHHTTCEEECSCEEEEEETTEEEEEETTEEEEECCSEEEECCC
T ss_pred             HHHHhhCCeEEEeeeEEEEEcCCCCEEecCCeEEEEECCEEEECCC
Confidence            345678899999999999999777666554333 589999999999

>d2gjca1 c.3.1.6 (A:16-326) Thiazole biosynthetic enzyme Thi4 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: Thi4-like
domain: Thiazole biosynthetic enzyme Thi4
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=98.05  E-value=1.6e-06  Score=80.27  Aligned_cols=42  Identities=21%  Similarity=0.298  Sum_probs=34.2

Q ss_pred             CCCCcEEEEcCcHHHHHHHHHHHHcCCCCCcEEEEcCCCCCCC
Q 012165           49 NENREFVIVGGGNAAGYAARTFVEHGMADGRLCIVSKEAYAPY   91 (469)
Q Consensus        49 ~~~~~vvIIGgG~AGl~aA~~L~~~g~~~~~V~vie~~~~~~~   91 (469)
                      ...+||+||||||||++||.+|+++.. ..+|+|+|+.+.++.
T Consensus        48 ~~~~~~~~~g~g~~g~~~a~~~~~~~~-~~~~~~~~~~~~~~~   89 (311)
T d2gjca1          48 FAVSDVIIVGAGSSGLSAAYVIAKNRP-DLKVCIIESSVAPGG   89 (311)
T ss_dssp             TTEESEEEECCSHHHHHHHHHHHHHCT-TSCEEEECSSSSCCT
T ss_pred             ccCCCEEEECCCHHHHHHHHHHHHhCC-CCeEEEEEcCCCCcc
Confidence            346899999999999999999997621 338999999877643

>d1ojta1 c.3.1.5 (A:117-275,A:401-470) Dihydrolipoamide dehydrogenase {Neisseria meningitidis [TaxId: 487]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Dihydrolipoamide dehydrogenase
species: Neisseria meningitidis [TaxId: 487]

Probab=98.01  E-value=1.9e-06  Score=76.02  Aligned_cols=37  Identities=24%  Similarity=0.414  Sum_probs=33.1

Q ss_pred             CCCcEEEEcCcHHHHHHHHHHHHcCCCCCcEEEEcCCCCC
Q 012165           50 ENREFVIVGGGNAAGYAARTFVEHGMADGRLCIVSKEAYA   89 (469)
Q Consensus        50 ~~~~vvIIGgG~AGl~aA~~L~~~g~~~~~V~vie~~~~~   89 (469)
                      ..|||+|||||||||+||.+|++.|.   +|+|||+.+..
T Consensus         5 ~dyDviIIG~GPaGlsaA~~aa~~G~---~V~viE~~~~~   41 (229)
T d1ojta1           5 AEYDVVVLGGGPGGYSAAFAAADEGL---KVAIVERYKTL   41 (229)
T ss_dssp             EEEEEEEECCSHHHHHHHHHHHHTTC---CEEEEESSSCS
T ss_pred             CccCEEEECcCHHHHHHHHHHHHCCC---eEEEEeccCCC
Confidence            35899999999999999999999987   79999987653

>d2bi7a1 c.4.1.3 (A:2-247,A:317-384) UDP-galactopyranose mutase, N-terminal domain {Klebsiella pneumoniae [TaxId: 573]}

class: Alpha and beta proteins (a/b)
fold: Nucleotide-binding domain
superfamily: Nucleotide-binding domain
family: UDP-galactopyranose mutase, N-terminal domain
domain: UDP-galactopyranose mutase, N-terminal domain
species: Klebsiella pneumoniae [TaxId: 573]

Probab=97.99  E-value=2.1e-06  Score=79.52  Aligned_cols=38  Identities=21%  Similarity=0.398  Sum_probs=35.0

Q ss_pred             CCcEEEEcCcHHHHHHHHHHHHcCCCCCcEEEEcCCCCCCC
Q 012165           51 NREFVIVGGGNAAGYAARTFVEHGMADGRLCIVSKEAYAPY   91 (469)
Q Consensus        51 ~~~vvIIGgG~AGl~aA~~L~~~g~~~~~V~vie~~~~~~~   91 (469)
                      +++|+|||||++||+||..|++.|+   +|+|+|++++.+.
T Consensus         2 ~KKI~IIGaG~sGL~aA~~L~k~G~---~V~viEk~~~iGG   39 (314)
T d2bi7a1           2 SKKILIVGAGFSGAVIGRQLAEKGH---QVHIIDQRDHIGG   39 (314)
T ss_dssp             CCEEEEECCSHHHHHHHHHHHTTTC---EEEEEESSSSSSG
T ss_pred             CCEEEEECCcHHHHHHHHHHHhCCC---CEEEEECCCCCcC
Confidence            5799999999999999999999987   8999999998764

>d2ivda1 c.3.1.2 (A:10-306,A:415-464) Protoporphyrinogen oxidase {Myxococcus xanthus [TaxId: 34]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD-linked reductases, N-terminal domain
domain: Protoporphyrinogen oxidase
species: Myxococcus xanthus [TaxId: 34]

Probab=97.98  E-value=2.2e-06  Score=78.50  Aligned_cols=36  Identities=19%  Similarity=0.248  Sum_probs=33.0

Q ss_pred             cEEEEcCcHHHHHHHHHHHHcCCCCCcEEEEcCCCCCCC
Q 012165           53 EFVIVGGGNAAGYAARTFVEHGMADGRLCIVSKEAYAPY   91 (469)
Q Consensus        53 ~vvIIGgG~AGl~aA~~L~~~g~~~~~V~vie~~~~~~~   91 (469)
                      ||+|||||+|||+||.+|+++|+   +|+|+|+++..+.
T Consensus         2 ~V~IIGaG~aGL~aA~~L~~~G~---~V~vlE~~~~~GG   37 (347)
T d2ivda1           2 NVAVVGGGISGLAVAHHLRSRGT---DAVLLESSARLGG   37 (347)
T ss_dssp             CEEEECCBHHHHHHHHHHHTTTC---CEEEECSSSSSBT
T ss_pred             eEEEECCCHHHHHHHHHHHhCCC---CEEEEecCCCCCc
Confidence            79999999999999999999998   7999999987653

>d2cula1 c.3.1.7 (A:2-231) GidA-related protein TTHA1897 {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: GidA-like
domain: GidA-related protein TTHA1897
species: Thermus thermophilus [TaxId: 274]

Probab=97.97  E-value=1.1e-05  Score=70.00  Aligned_cols=79  Identities=20%  Similarity=0.316  Sum_probs=61.6

Q ss_pred             eEEEEcCChHHHHHHHHHHhCCCeEe------------------------------------------eeHHHH-HHcCc
Q 012165          209 KVVVVGGGYIGMEVAAAAVGWKLDTT------------------------------------------RYEQLY-QQNGV  245 (469)
Q Consensus       209 ~vvVvG~G~~g~e~A~~l~~~g~~v~------------------------------------------~~~~~l-~~~gV  245 (469)
                      .|+|||+|+.|+|.|.++++.|.++-                                          .+++.+ ...++
T Consensus         4 DVIVIGgG~AG~eAA~~aAR~G~ktllit~~~~~ig~~~cnp~~gg~~kg~l~reid~kG~av~a~raQ~k~~l~~~~nL   83 (230)
T d2cula1           4 QVLIVGAGFSGAETAFWLAQKGVRVGLLTQSLDAVMMPFLPPKPPFPPGSLLERAYDPKDERVWAFHARAKYLLEGLRPL   83 (230)
T ss_dssp             SEEEECCSHHHHHHHHHHHHTTCCEEEEESCGGGTTCCSSCCCSCCCTTCHHHHHCCTTCCCHHHHHHHHHHHHHTCTTE
T ss_pred             cEEEECcCHHHHHHHHHHHHCCCcEEEEEeccchhcccccCCccccCCCcceeeeeeccchhhhhHHHHHHHHHhhhcCH
Confidence            58999999999999999999998875                                          112222 23488


Q ss_pred             EEEcCCeEEEEEeCCCCcEEEEEcCCCCEEeCCEEEEccCCccC
Q 012165          246 KFVKGASIKNLEAGSDGRVAAVKLEDGSTIDADTIVIGIGAKPT  289 (469)
Q Consensus       246 ~~~~~~~v~~i~~~~~~~v~~v~~~~g~~i~~D~vi~a~G~~p~  289 (469)
                      .++.+. |.++.. +++++.+|.+.+|.++.+..||+++|.--+
T Consensus        84 ~i~q~~-V~dli~-e~~~v~gV~t~~G~~~~AkaVILtTGTFL~  125 (230)
T d2cula1          84 HLFQAT-ATGLLL-EGNRVVGVRTWEGPPARGEKVVLAVGSFLG  125 (230)
T ss_dssp             EEEECC-EEEEEE-ETTEEEEEEETTSCCEECSEEEECCTTCSS
T ss_pred             HHHhcc-ceeeEe-cccceeeEEeccccEEEEeEEEEccCccee
Confidence            888764 666653 367788999999999999999999996443

>d2gv8a1 c.3.1.5 (A:3-180,A:288-444) Flavin-dependent monoxygenase SPBP16F5.08c {Schizosaccharomyces pombe [TaxId: 4896]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Flavin-dependent monoxygenase SPBP16F5.08c
species: Schizosaccharomyces pombe [TaxId: 4896]

Probab=97.97  E-value=2.5e-05  Score=72.70  Aligned_cols=48  Identities=19%  Similarity=0.081  Sum_probs=32.9

Q ss_pred             HHHHHcCcEEEcCCeEEEEEeCCCCcEEEEEcCC---CC---EEeCCEEEEccCCc
Q 012165          238 QLYQQNGVKFVKGASIKNLEAGSDGRVAAVKLED---GS---TIDADTIVIGIGAK  287 (469)
Q Consensus       238 ~~l~~~gV~~~~~~~v~~i~~~~~~~v~~v~~~~---g~---~i~~D~vi~a~G~~  287 (469)
                      ...+..+..++++++|++++..+ ++. .|++.+   ++   ...+|.||+|+|..
T Consensus       121 ~~~~~~~~~I~~~t~V~~v~~~~-~~w-~Vt~~~~~~~~~~~~~~~d~VI~AtG~~  174 (335)
T d2gv8a1         121 IYAQPLLPFIKLATDVLDIEKKD-GSW-VVTYKGTKAGSPISKDIFDAVSICNGHY  174 (335)
T ss_dssp             HHHGGGGGGEECSEEEEEEEEET-TEE-EEEEEESSTTCCEEEEEESEEEECCCSS
T ss_pred             HHHHHhhhcccCceEEEEEEecC-CEE-EEEEEecCCCCeEEEEEeeEEEEccccc
Confidence            33445678899999999999754 432 244332   22   45699999999964

>d1ebda1 c.3.1.5 (A:7-154,A:272-346) Dihydrolipoamide dehydrogenase {Bacillus stearothermophilus [TaxId: 1422]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Dihydrolipoamide dehydrogenase
species: Bacillus stearothermophilus [TaxId: 1422]

Probab=97.93  E-value=2.7e-06  Score=74.35  Aligned_cols=35  Identities=29%  Similarity=0.339  Sum_probs=32.1

Q ss_pred             CCCcEEEEcCcHHHHHHHHHHHHcCCCCCcEEEEcCCC
Q 012165           50 ENREFVIVGGGNAAGYAARTFVEHGMADGRLCIVSKEA   87 (469)
Q Consensus        50 ~~~~vvIIGgG~AGl~aA~~L~~~g~~~~~V~vie~~~   87 (469)
                      .++|++||||||||++||.++++.|.   +|+|||+..
T Consensus         2 ~~~DviVIG~GpaGl~aA~~aar~G~---kV~vIEk~~   36 (223)
T d1ebda1           2 IETETLVVGAGPGGYVAAIRAAQLGQ---KVTIVEKGN   36 (223)
T ss_dssp             EECSEEEECCSHHHHHHHHHHHHTTC---CEEEEESSC
T ss_pred             ccCCEEEECCCHHHHHHHHHHHHCCC---EEEEEecCC
Confidence            35899999999999999999999987   799999875

>d1k0ia1 c.3.1.2 (A:1-173,A:276-394) p-Hydroxybenzoate hydroxylase, PHBH {Pseudomonas aeruginosa [TaxId: 287]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD-linked reductases, N-terminal domain
domain: p-Hydroxybenzoate hydroxylase, PHBH
species: Pseudomonas aeruginosa [TaxId: 287]

Probab=97.93  E-value=3.2e-06  Score=77.22  Aligned_cols=35  Identities=14%  Similarity=0.328  Sum_probs=32.1

Q ss_pred             CCCcEEEEcCcHHHHHHHHHHHHcCCCCCcEEEEcCCC
Q 012165           50 ENREFVIVGGGNAAGYAARTFVEHGMADGRLCIVSKEA   87 (469)
Q Consensus        50 ~~~~vvIIGgG~AGl~aA~~L~~~g~~~~~V~vie~~~   87 (469)
                      |+++|+||||||+||++|..|+++|+   +|+|+|+.+
T Consensus         1 mk~~V~IvGaGp~Gl~~A~~L~~~G~---~v~vlE~~~   35 (292)
T d1k0ia1           1 MKTQVAIIGAGPSGLLLGQLLHKAGI---DNVILERQT   35 (292)
T ss_dssp             CBCSEEEECCSHHHHHHHHHHHHHTC---CEEEECSSC
T ss_pred             CCCCEEEECcCHHHHHHHHHHHHCCC---CEEEEeCCC
Confidence            35699999999999999999999998   799999875

>d2voua1 c.3.1.2 (A:2-163,A:292-394) Dihydroxypyridine hydroxylase DhpH {Arthrobacter nicotinovorans [TaxId: 29320]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD-linked reductases, N-terminal domain
domain: Dihydroxypyridine hydroxylase DhpH
species: Arthrobacter nicotinovorans [TaxId: 29320]

Probab=97.92  E-value=2e-05  Score=70.42  Aligned_cols=82  Identities=17%  Similarity=0.251  Sum_probs=66.8

Q ss_pred             cCCeEEEEcCChHHHHHHHHHHhCCCeEe---------------------------------------------------
Q 012165          206 KAKKVVVVGGGYIGMEVAAAAVGWKLDTT---------------------------------------------------  234 (469)
Q Consensus       206 ~~~~vvVvG~G~~g~e~A~~l~~~g~~v~---------------------------------------------------  234 (469)
                      ..++|+|||+|+.|+-+|..|++.|.+++                                                   
T Consensus         3 ~~~kV~IiGaG~aGl~~A~~L~~~G~~v~v~Er~~~~~~~~~~g~~~~~~~~~~l~~~g~~~~~~~~~~~~~~~~~~~~~   82 (265)
T d2voua1           3 TTDRIAVVGGSISGLTAALMLRDAGVDVDVYERSPQPLSGFGTGIVVQPELVHYLLEQGVELDSISVPSSSMEYVDALTG   82 (265)
T ss_dssp             CCSEEEEECCSHHHHHHHHHHHHTTCEEEEECSSSSSCCCCSCEEECCHHHHHHHHHTTCCGGGTCBCCCEEEEEETTTC
T ss_pred             CCCcEEEECcCHHHHHHHHHHHHCCCCEEEEeCCCCCCCCCceEEEECccHHHHHHHcCcchhhhccCCCcceeEeccCC
Confidence            35799999999999999999999999887                                                   


Q ss_pred             -----------------e-eHHHHHHcCcEEEcCCeEEEEEeCCCCcEEEEEcCCCCEEeCCEEEEccCCccC
Q 012165          235 -----------------R-YEQLYQQNGVKFVKGASIKNLEAGSDGRVAAVKLEDGSTIDADTIVIGIGAKPT  289 (469)
Q Consensus       235 -----------------~-~~~~l~~~gV~~~~~~~v~~i~~~~~~~v~~v~~~~g~~i~~D~vi~a~G~~p~  289 (469)
                                       . ....-...++.++++..+..++..+++ + .++++||+++.+|++|.|.|....
T Consensus        83 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~-v-~v~~~dG~~~~~d~~v~adG~~s~  153 (265)
T d2voua1          83 ERVGSVPADWRFTSYDSIYGGLYELFGPERYHTSKCLVGLSQDSET-V-QMRFSDGTKAEANWVIGADGGASV  153 (265)
T ss_dssp             CEEEEEECCCCEEEHHHHHHHHHHHHCSTTEETTCCEEEEEECSSC-E-EEEETTSCEEEESEEEECCCTTCH
T ss_pred             ceecccccccccchhHHHHHHHHHhcccceeecCcEEEEEEeeCCc-e-EEEECCCCEEEEEEEecccccccc
Confidence                             1 122223467889999999999875444 3 588999999999999999997653

>d1aoga1 c.3.1.5 (A:3-169,A:287-357) Trypanothione reductase {Trypanosoma cruzi [TaxId: 5693]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Trypanothione reductase
species: Trypanosoma cruzi [TaxId: 5693]

Probab=97.92  E-value=4.2e-06  Score=73.86  Aligned_cols=38  Identities=16%  Similarity=0.217  Sum_probs=32.8

Q ss_pred             CCCCcEEEEcCcHHHHHHHHHHHHcCCCCCcEEEEcCCCC
Q 012165           49 NENREFVIVGGGNAAGYAARTFVEHGMADGRLCIVSKEAY   88 (469)
Q Consensus        49 ~~~~~vvIIGgG~AGl~aA~~L~~~g~~~~~V~vie~~~~   88 (469)
                      +++|||+||||||||++||.++++.+.+  .|+|+|+...
T Consensus         1 ~~~YDviIIG~GpaGl~aA~~aa~~g~k--~V~iie~~~~   38 (238)
T d1aoga1           1 SKIFDLVVIGAGSGGLEAAWNAATLYKK--RVAVIDVQMV   38 (238)
T ss_dssp             CCSBSEEEECCSHHHHHHHHHHHHTSCC--CEEEEESCSS
T ss_pred             CCccCEEEECCCHHHHHHHHHHHHcCCC--EEEEEEeecc
Confidence            4679999999999999999999998753  6899987654

>d2bcgg1 c.3.1.3 (G:5-301) Guanine nucleotide dissociation inhibitor, GDI {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: GDI-like N domain
domain: Guanine nucleotide dissociation inhibitor, GDI
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=97.92  E-value=1.2e-05  Score=71.08  Aligned_cols=26  Identities=15%  Similarity=0.081  Sum_probs=24.8

Q ss_pred             eEEEEcCChHHHHHHHHHHhCCCeEe
Q 012165          209 KVVVVGGGYIGMEVAAAAVGWKLDTT  234 (469)
Q Consensus       209 ~vvVvG~G~~g~e~A~~l~~~g~~v~  234 (469)
                      .|+|||+|..|+-+|..|++.|.+|.
T Consensus         7 DviViGaG~~Gl~~A~~La~~G~~V~   32 (297)
T d2bcgg1           7 DVIVLGTGITECILSGLLSVDGKKVL   32 (297)
T ss_dssp             SEEEECCSHHHHHHHHHHHHTTCCEE
T ss_pred             CEEEECcCHHHHHHHHHHHHCCCCEE
Confidence            58999999999999999999999997

>d1cjca1 c.3.1.1 (A:107-331) Adrenodoxin reductase of mitochondrial p450 systems {Cow (Bos taurus) [TaxId: 9913]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: C-terminal domain of adrenodoxin reductase-like
domain: Adrenodoxin reductase of mitochondrial p450 systems
species: Cow (Bos taurus) [TaxId: 9913]

Probab=97.91  E-value=5.6e-05  Score=65.96  Aligned_cols=51  Identities=22%  Similarity=0.251  Sum_probs=35.2

Q ss_pred             CCCCCCcCcEEEecCHHHHHHHH---H---hhhcCCeEEEEcCChHHHHHHHHHHhC
Q 012165          179 EKIGGYLPGVHYIRDVADADALI---S---SLEKAKKVVVVGGGYIGMEVAAAAVGW  229 (469)
Q Consensus       179 ~~~g~~~~~v~~~~~~~~~~~~~---~---~~~~~~~vvVvG~G~~g~e~A~~l~~~  229 (469)
                      .+||.+++|++...++.....-+   .   ....+++|+|||+|.+|+++|..+.+.
T Consensus         5 ~IPGedl~gV~~A~dfl~~~N~~p~~~~~~~~~~gk~VvVIGgGNVAlD~aR~l~r~   61 (225)
T d1cjca1           5 DIPGEELPGVFSARAFVGWYNGLPENRELAPDLSCDTAVILGQGNVALDVARILLTP   61 (225)
T ss_dssp             CCTTTTSTTEEEHHHHHHHHTTCGGGTTCCCCTTSSEEEEESCSHHHHHHHHHHHSC
T ss_pred             CCCCCCCCCcEeHHHHHHHHhCCccccccCccccCceEEEECCchhHHHHHHHHhcC
Confidence            57899999998764332110000   0   012479999999999999999999873

>d1w4xa2 c.3.1.5 (A:155-389) Phenylacetone monooxygenase {Thermobifida fusca [TaxId: 2021]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Phenylacetone monooxygenase
species: Thermobifida fusca [TaxId: 2021]

Probab=97.81  E-value=2.1e-05  Score=69.02  Aligned_cols=30  Identities=20%  Similarity=0.273  Sum_probs=26.4

Q ss_pred             hcCCeEEEEcCChHHHHHHHHHHhCCCeEe
Q 012165          205 EKAKKVVVVGGGYIGMEVAAAAVGWKLDTT  234 (469)
Q Consensus       205 ~~~~~vvVvG~G~~g~e~A~~l~~~g~~v~  234 (469)
                      ..+|+|+|||+|.+|+++|..+++.+.+++
T Consensus        30 ~~gK~V~VvG~G~Sa~dia~~~~~~~~~~~   59 (235)
T d1w4xa2          30 FSGQRVGVIGTGSSGIQVSPQIAKQAAELF   59 (235)
T ss_dssp             CBTCEEEEECCSHHHHHHHHHHHHHBSEEE
T ss_pred             CCCCEEEEECCCccHHHHHHHHHhhhcccc
Confidence            478999999999999999999988777653

>d1kf6a2 c.3.1.4 (A:0-225,A:358-442) Fumarate reductase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: Succinate dehydrogenase/fumarate reductase flavoprotein N-terminal domain
domain: Fumarate reductase
species: Escherichia coli [TaxId: 562]

Probab=97.80  E-value=0.00015  Score=66.58  Aligned_cols=90  Identities=22%  Similarity=0.425  Sum_probs=64.2

Q ss_pred             HHHHHHcCcEEEcCCeEEEEEeCCCCcEEEEE---cCCCC--EEeCCEEEEccCC-----ccCC--c--------hhhhc
Q 012165          237 EQLYQQNGVKFVKGASIKNLEAGSDGRVAAVK---LEDGS--TIDADTIVIGIGA-----KPTV--S--------PFERV  296 (469)
Q Consensus       237 ~~~l~~~gV~~~~~~~v~~i~~~~~~~v~~v~---~~~g~--~i~~D~vi~a~G~-----~p~~--~--------~~~~~  296 (469)
                      .+..+..+|+++.++.+.++..+ ++++.++.   ..+|+  .+.++.||+|||-     ..++  .        ++..+
T Consensus       142 ~~~~~~~~v~i~~~~~v~~Ll~d-~g~v~Gvv~~~~~~g~~~~~~AkaVILATGG~g~~y~~ttn~~~~tGDG~~mA~~a  220 (311)
T d1kf6a2         142 QTSLQFPQIQRFDEHFVLDILVD-DGHVRGLVAMNMMEGTLVQIRANAVVMATGGAGRVYRYNTNGGIVTGDGMGMALSH  220 (311)
T ss_dssp             HHHTTCTTEEEEETEEEEEEEEE-TTEEEEEEEEETTTTEEEEEECSCEEECCCCCGGGSSSBSSCTTCSCHHHHHHHTT
T ss_pred             HHHHccCcceeEeeeEeeeeEec-CCcceeEEEEEcCCCcEEEEECCEEEEcCCCccccccccCCCCCcCcHHHHHHHhc
Confidence            34445568999999999998754 67776664   35664  4689999999984     2211  1        23345


Q ss_pred             CCcc-cCCCEEeCCCCCCCCCceEEecccccc
Q 012165          297 GLNS-SVGGIQVDGQFRTRMPGIFAIGDVAAF  327 (469)
Q Consensus       297 gl~~-~~g~i~Vd~~~~t~~~~Vfa~GD~a~~  327 (469)
                      |... |-++|.++++..+..+++|+.|++..-
T Consensus       221 Ga~l~dme~iq~~p~~~~~~~~~~~~~~~~~~  252 (311)
T d1kf6a2         221 GVPLRDMGGIETDQNCETRIKGLFAVGECSSV  252 (311)
T ss_dssp             TCCEESCCEEECCTTSBCSSBTEEECGGGEEC
T ss_pred             ccceeecccccccccchhcccCCCcCcceeee
Confidence            5554 446888898888889999999998764

>d3c96a1 c.3.1.2 (A:4-182,A:294-402) Monooxygenase PhzS {Pseudomonas aeruginosa [TaxId: 287]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD-linked reductases, N-terminal domain
domain: Monooxygenase PhzS
species: Pseudomonas aeruginosa [TaxId: 287]

Probab=97.74  E-value=1.1e-05  Score=72.86  Aligned_cols=103  Identities=19%  Similarity=0.165  Sum_probs=58.9

Q ss_pred             HcCcEEEcCCeEEEEEeCCCCcEEEEEcCCC----CEEeCCEEEEccCCccCCchhhhcCCcccCCCEEeCCCCCCCCCc
Q 012165          242 QNGVKFVKGASIKNLEAGSDGRVAAVKLEDG----STIDADTIVIGIGAKPTVSPFERVGLNSSVGGIQVDGQFRTRMPG  317 (469)
Q Consensus       242 ~~gV~~~~~~~v~~i~~~~~~~v~~v~~~~g----~~i~~D~vi~a~G~~p~~~~~~~~gl~~~~g~i~Vd~~~~t~~~~  317 (469)
                      ..++.+..+++++.++..++ .+ .+.+.||    +++.+|++|.|-|....+.  ........   ............+
T Consensus       118 ~~~~~~~~~~~v~~~~~~~~-~v-~v~~~~g~~~~~~~~ad~vi~ADG~~S~vr--~~~~~~~~---~~~~~~~~~~~~~  190 (288)
T d3c96a1         118 LGQQAVRTGLGVERIEERDG-RV-LIGARDGHGKPQALGADVLVGADGIHSAVR--AHLHPDQR---PLRDPLPHWGRGR  190 (288)
T ss_dssp             HCTTSEEESEEEEEEEEETT-EE-EEEEEETTSCEEEEEESEEEECCCTTCHHH--HHHCTTCC---CCCCCCSCCCBTT
T ss_pred             ccCeeeecCcEEEEeeecCC-cE-EEEEEcCCCCeEEEeeceeeccCCccceee--eeeccccc---cccccccccccCc
Confidence            45677888888888886533 33 4566555    4799999999999865321  11100000   0001112234568


Q ss_pred             eEEeccccccCCccCCcccccchHHHHHHHHHHHHHHHh
Q 012165          318 IFAIGDVAAFPLKMYDRTARVEHVDHARQSAQHCIKALL  356 (469)
Q Consensus       318 Vfa~GD~a~~~~~~~~~~~~~~~~~~A~~~a~~~a~~i~  356 (469)
                      +..+||.+....+..|.     -...+..-+...+..+.
T Consensus       191 ~~~~gda~h~~~p~~g~-----G~~~ai~d~~~l~~~l~  224 (288)
T d3c96a1         191 ITLLGDAAHLMYPMGAN-----GASQAILDGIELAAALA  224 (288)
T ss_dssp             EEECTHHHHCCCSSTTC-----THHHHHHHHHHHHHHHH
T ss_pred             ceecccccceeCCcccc-----chhhhhhhHHHHHHHHh
Confidence            99999999765443332     12345555666665554

>d1gtea3 c.3.1.1 (A:288-440) Dihydropyrimidine dehydrogenase, domain 3 {Pig (Sus scrofa) [TaxId: 9823]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: C-terminal domain of adrenodoxin reductase-like
domain: Dihydropyrimidine dehydrogenase, domain 3
species: Pig (Sus scrofa) [TaxId: 9823]

Probab=97.70  E-value=5.9e-05  Score=61.38  Aligned_cols=37  Identities=19%  Similarity=0.345  Sum_probs=30.5

Q ss_pred             CCCCcEEEEcCcHHHHHHHHHHHHcCCCCCcEEEEcCCC
Q 012165           49 NENREFVIVGGGNAAGYAARTFVEHGMADGRLCIVSKEA   87 (469)
Q Consensus        49 ~~~~~vvIIGgG~AGl~aA~~L~~~g~~~~~V~vie~~~   87 (469)
                      ...++|||||||.+|+-+|..+.++|.+  .|+++...+
T Consensus        43 ~~~~kVvVIGGGdtA~D~A~~a~r~GA~--~V~vi~rr~   79 (153)
T d1gtea3          43 SIRGAVIVLGAGDTAFDCATSALRCGAR--RVFLVFRKG   79 (153)
T ss_dssp             CCCSEEEEECSSHHHHHHHHHHHHTTCS--EEEEECSSC
T ss_pred             cCCCEEEEECCChhHHHHHHHHHHcCCc--ceeEEEeCC
Confidence            3456899999999999999999999853  688886543

>d2gv8a2 c.3.1.5 (A:181-287) Flavin-dependent monoxygenase SPBP16F5.08c {Schizosaccharomyces pombe [TaxId: 4896]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Flavin-dependent monoxygenase SPBP16F5.08c
species: Schizosaccharomyces pombe [TaxId: 4896]

Probab=97.63  E-value=2.8e-05  Score=59.27  Aligned_cols=73  Identities=16%  Similarity=0.221  Sum_probs=50.8

Q ss_pred             hcCCeEEEEcCChHHHHHHHHHHhCCCeEeeeH----HHHHHcCcEEEcCCeEEEEEeCCCCcEEEEEcCCCCEEe-CCE
Q 012165          205 EKAKKVVVVGGGYIGMEVAAAAVGWKLDTTRYE----QLYQQNGVKFVKGASIKNLEAGSDGRVAAVKLEDGSTID-ADT  279 (469)
Q Consensus       205 ~~~~~vvVvG~G~~g~e~A~~l~~~g~~v~~~~----~~l~~~gV~~~~~~~v~~i~~~~~~~v~~v~~~~g~~i~-~D~  279 (469)
                      ..+|+|+|||+|.+|+++|..|+..+.+++...    ......++....  .+.+++.  ++.  .+.+.||+.+. .|.
T Consensus        30 f~gK~VlVVG~g~Sa~dia~~l~~~ak~v~~~~~r~~~~~~~~~~~~~~--~i~~~~~--~~~--~v~~~dG~~~~~vD~  103 (107)
T d2gv8a2          30 FVGESVLVVGGASSANDLVRHLTPVAKHPIYQSLLGGGDIQNESLQQVP--EITKFDP--TTR--EIYLKGGKVLSNIDR  103 (107)
T ss_dssp             GTTCCEEEECSSHHHHHHHHHHTTTSCSSEEEECTTCCSCBCSSEEEEC--CEEEEET--TTT--EEEETTTEEECCCSE
T ss_pred             cCCCeEEEECCCCCHHHHHHHHHHhcCEEEEEEecCccccccccceecC--CeeEEec--CCC--EEEEcCCCEEeCCCE
Confidence            478999999999999999999999887765111    011122333332  3666663  232  47899998876 799


Q ss_pred             EEEc
Q 012165          280 IVIG  283 (469)
Q Consensus       280 vi~a  283 (469)
                      ||+|
T Consensus       104 Ii~C  107 (107)
T d2gv8a2         104 VIYC  107 (107)
T ss_dssp             EEEC
T ss_pred             EEEC
Confidence            9986

>d1pn0a1 c.3.1.2 (A:1-240,A:342-461) Phenol hydroxylase {Soil-living yeast (Trichosporon cutaneum) [TaxId: 5554]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD-linked reductases, N-terminal domain
domain: Phenol hydroxylase
species: Soil-living yeast (Trichosporon cutaneum) [TaxId: 5554]

Probab=97.61  E-value=1.9e-05  Score=73.86  Aligned_cols=38  Identities=26%  Similarity=0.385  Sum_probs=32.4

Q ss_pred             CCCcEEEEcCcHHHHHHHHHHH-----HcCCCCCcEEEEcCCCCCC
Q 012165           50 ENREFVIVGGGNAAGYAARTFV-----EHGMADGRLCIVSKEAYAP   90 (469)
Q Consensus        50 ~~~~vvIIGgG~AGl~aA~~L~-----~~g~~~~~V~vie~~~~~~   90 (469)
                      ..|||+|||||++|+++|..|+     +.|+   +|+|+|+.+.+.
T Consensus         6 ~~yDV~IvGaG~aGl~lA~~La~~~~~~~G~---~v~vlEr~~~~~   48 (360)
T d1pn0a1           6 SYCDVLIVGAGPAGLMAARVLSEYVRQKPDL---KVRIIDKRSTKV   48 (360)
T ss_dssp             EEEEEEEECCSHHHHHHHHHHHHHHHHSTTC---CEEEECSSSSCC
T ss_pred             CCCCEEEECcCHHHHHHHHHHHhcccccCCC---cEEEEcCCCCCC
Confidence            3489999999999999999996     4576   799999987643

>d1lqta1 c.3.1.1 (A:109-324) Ferredoxin:NADP reductase FprA {Mycobacterium tuberculosis [TaxId: 1773]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: C-terminal domain of adrenodoxin reductase-like
domain: Ferredoxin:NADP reductase FprA
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=97.61  E-value=0.00022  Score=61.63  Aligned_cols=49  Identities=24%  Similarity=0.268  Sum_probs=33.3

Q ss_pred             CCCCCCcCcEEEecCHHHHHHHH------HhhhcCCeEEEEcCChHHHHHHHHHH
Q 012165          179 EKIGGYLPGVHYIRDVADADALI------SSLEKAKKVVVVGGGYIGMEVAAAAV  227 (469)
Q Consensus       179 ~~~g~~~~~v~~~~~~~~~~~~~------~~~~~~~~vvVvG~G~~g~e~A~~l~  227 (469)
                      .+||.+++|++...++...-.-+      .....+++|+|||+|.+|+++|..+.
T Consensus         5 ~IPGedl~gV~~A~dfl~~~N~~p~~~~~~~~~~gk~VvVIGgGNvAlD~AR~ll   59 (216)
T d1lqta1           5 NIPGEDLPGSIAAVDFVGWYNAHPHFEQVSPDLSGARAVVIGNGNVALDVARILL   59 (216)
T ss_dssp             CCTTTTSTTEEEHHHHHHHHTTCGGGTTCCCCCCSSEEEEECCSHHHHHHHHHHH
T ss_pred             CCCCCCCCCcEeHHHHHHHHhCCccccccCccccCceEEEECCCchhHhhhhhhc
Confidence            46899999998764332110000      00123789999999999999999876

>d2f5va1 c.3.1.2 (A:43-354,A:553-619) Pyranose 2-oxidase {White-rot fungus (Peniophora sp. SG) [TaxId: 204723]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD-linked reductases, N-terminal domain
domain: Pyranose 2-oxidase
species: White-rot fungus (Peniophora sp. SG) [TaxId: 204723]

Probab=97.60  E-value=1.9e-05  Score=74.43  Aligned_cols=89  Identities=15%  Similarity=0.270  Sum_probs=58.0

Q ss_pred             HHHcCcEEEcCCeEEEEEeCC-CCcEEEEEc---CCCC--EEeCCEEEEccCCccCCchhhhcCCcc-------------
Q 012165          240 YQQNGVKFVKGASIKNLEAGS-DGRVAAVKL---EDGS--TIDADTIVIGIGAKPTVSPFERVGLNS-------------  300 (469)
Q Consensus       240 l~~~gV~~~~~~~v~~i~~~~-~~~v~~v~~---~~g~--~i~~D~vi~a~G~~p~~~~~~~~gl~~-------------  300 (469)
                      ..+.|+++++++.|.+|..++ .+++++|+.   .+|+  .+.++.||++.|..-...+|..+++..             
T Consensus       228 ~~~~~~~l~~~a~V~~i~~~~~~~r~~gV~~~d~~~g~~~~i~a~~vilaaGa~~tp~lL~~Sg~~~~~~~~~~~~~~~~  307 (379)
T d2f5va1         228 APEERFNLFPAVACERVVRNALNSEIESLHIHDLISGDRFEIKADVYVLTAGAVHNTQLLVNSGFGQLGRPNPTNPPELL  307 (379)
T ss_dssp             EEEEEEEEECSEEEEEEEECTTSSCEEEEEEEETTTCCEEEEEEEEEEECSCHHHHHHHHHHTTSSCCSSCCTTSCCSSS
T ss_pred             hcCCCCEEecCCEEEEEEEeCCCCEEEEEEEEECCCCEEEEEeceEEEeccCccCCHHHHhhcccccccccccccCcccc
Confidence            345689999999999998654 346777764   4454  578999999999754333333222210             


Q ss_pred             ----------cC--CCEEeCCCCCC-CCCceEEeccccccCC
Q 012165          301 ----------SV--GGIQVDGQFRT-RMPGIFAIGDVAAFPL  329 (469)
Q Consensus       301 ----------~~--g~i~Vd~~~~t-~~~~Vfa~GD~a~~~~  329 (469)
                                ++  ..=+||.++++ .++|+|++| +.-+|.
T Consensus       308 ~~~g~h~mG~~~~~~~~vvd~~~~v~g~~nlyv~d-~sv~p~  348 (379)
T d2f5va1         308 PSLGSHRMGFDEKEDNCCVNTDSRVFGFKNLFLGG-CGNIPT  348 (379)
T ss_dssp             TTTTBTCBCSCTTTTTCSBCTTCBBTTCSSEEECS-GGGCCS
T ss_pred             cccceeecccCCCCCCccCCCCCcccccCCEEEeC-CcccCC
Confidence                      00  11267888888 789999865 554554

>d1neka2 c.3.1.4 (A:1-235,A:356-450) Succinate dehydogenase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: Succinate dehydrogenase/fumarate reductase flavoprotein N-terminal domain
domain: Succinate dehydogenase
species: Escherichia coli [TaxId: 562]

Probab=97.58  E-value=0.00016  Score=66.91  Aligned_cols=50  Identities=22%  Similarity=0.253  Sum_probs=35.6

Q ss_pred             HHHHHHcCcEEEcCCeEEEEEeCCCCcEEE---EEcCCCC--EEeCCEEEEccCC
Q 012165          237 EQLYQQNGVKFVKGASIKNLEAGSDGRVAA---VKLEDGS--TIDADTIVIGIGA  286 (469)
Q Consensus       237 ~~~l~~~gV~~~~~~~v~~i~~~~~~~v~~---v~~~~g~--~i~~D~vi~a~G~  286 (469)
                      .+..++.+++++....+.++...+++.+..   ....+|+  .+.++.||+|+|-
T Consensus       150 ~~~~~~~~v~~~~~~~~~~l~~~~~~~~~g~~~~~~~~g~~~~~~a~~vIlAtGG  204 (330)
T d1neka2         150 YQQNLKNHTTIFSEWYALDLVKNQDGAVVGCTALCIETGEVVYFKARATVLATGG  204 (330)
T ss_dssp             HHHHHHTTCEEECSEEEEEEEECTTSCEEEEEEEETTTCCEEEEEESCEEECCCC
T ss_pred             HHHHHhcCCeEEEEEEEEEeeeeccccceeeeeEEccCCcEEEEeccEEEEcCCC
Confidence            344566899999998888876655555433   3445664  5789999999994

>d1neka2 c.3.1.4 (A:1-235,A:356-450) Succinate dehydogenase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: Succinate dehydrogenase/fumarate reductase flavoprotein N-terminal domain
domain: Succinate dehydogenase
species: Escherichia coli [TaxId: 562]

Probab=97.58  E-value=1.2e-05  Score=74.89  Aligned_cols=37  Identities=24%  Similarity=0.261  Sum_probs=33.1

Q ss_pred             CCCCcEEEEcCcHHHHHHHHHHHHcCCCCCcEEEEcCCCC
Q 012165           49 NENREFVIVGGGNAAGYAARTFVEHGMADGRLCIVSKEAY   88 (469)
Q Consensus        49 ~~~~~vvIIGgG~AGl~aA~~L~~~g~~~~~V~vie~~~~   88 (469)
                      .+.+||+|||+|+|||+||.+++++|.   +|+|+|+.+.
T Consensus         5 ~~~~DVlVVG~G~AGl~AAl~aa~~G~---~V~lleK~~~   41 (330)
T d1neka2           5 VREFDAVVIGAGGAGMRAALQISQSGQ---TCALLSKVFP   41 (330)
T ss_dssp             EEEESCEEECCSHHHHHHHHHHHHTTC---CCEEECSSCG
T ss_pred             cccCCEEEECcCHHHHHHHHHHHHcCC---eEEEEeCCCC
Confidence            346899999999999999999999987   7999999764

>d3c96a1 c.3.1.2 (A:4-182,A:294-402) Monooxygenase PhzS {Pseudomonas aeruginosa [TaxId: 287]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD-linked reductases, N-terminal domain
domain: Monooxygenase PhzS
species: Pseudomonas aeruginosa [TaxId: 287]

Probab=97.50  E-value=0.00045  Score=61.67  Aligned_cols=27  Identities=22%  Similarity=0.311  Sum_probs=24.5

Q ss_pred             CeEEEEcCChHHHHHHHHHHhCCC-eEe
Q 012165          208 KKVVVVGGGYIGMEVAAAAVGWKL-DTT  234 (469)
Q Consensus       208 ~~vvVvG~G~~g~e~A~~l~~~g~-~v~  234 (469)
                      -+|+|||+|+.|+-+|..|++.|. +|+
T Consensus         2 ~~V~IvGaG~aGl~~A~~L~~~Gi~~V~   29 (288)
T d3c96a1           2 IDILIAGAGIGGLSCALALHQAGIGKVT   29 (288)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHTTCSEEE
T ss_pred             CEEEEECcCHHHHHHHHHHHhCCCCeEE
Confidence            379999999999999999999996 765

>d1jnra2 c.3.1.4 (A:2-256,A:402-502) Adenylylsulfate reductase A subunit {Archaeon Archaeoglobus fulgidus [TaxId: 2234]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: Succinate dehydrogenase/fumarate reductase flavoprotein N-terminal domain
domain: Adenylylsulfate reductase A subunit
species: Archaeon Archaeoglobus fulgidus [TaxId: 2234]

Probab=97.30  E-value=9e-05  Score=69.26  Aligned_cols=41  Identities=22%  Similarity=0.237  Sum_probs=32.3

Q ss_pred             CCCCcEEEEcCcHHHHHHHHHHHHcCC-CCCcEEEEcCCCCC
Q 012165           49 NENREFVIVGGGNAAGYAARTFVEHGM-ADGRLCIVSKEAYA   89 (469)
Q Consensus        49 ~~~~~vvIIGgG~AGl~aA~~L~~~g~-~~~~V~vie~~~~~   89 (469)
                      ...+||||||+|+||++||.+|++.+. +..+|+|||+.+..
T Consensus        19 ~~e~DVlIIG~G~AGl~AA~~aa~~~~~~G~~V~vieK~~~~   60 (356)
T d1jnra2          19 VVETDILIIGGGFSGCGAAYEAAYWAKLGGLKVTLVEKAAVE   60 (356)
T ss_dssp             EEECSEEEECCSHHHHHHHHHHHHHHTTTTCCEEEECSSCTT
T ss_pred             EEecCEEEECCCHHHHHHHHHHHHHHHhCcCEEEEEeCCCCC
Confidence            345899999999999999999986321 12389999998654

>d1trba2 c.3.1.5 (A:119-244) Thioredoxin reductase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Thioredoxin reductase
species: Escherichia coli [TaxId: 562]

Probab=97.29  E-value=0.00036  Score=54.51  Aligned_cols=92  Identities=16%  Similarity=0.190  Sum_probs=63.1

Q ss_pred             CCCcEEEEcCcHHHHHHHHHHHHcCCCCCcEEEEcCCCCCCCCCCCCcccccCCCCCCCCCCCCCccccCCCCCCCCHhH
Q 012165           50 ENREFVIVGGGNAAGYAARTFVEHGMADGRLCIVSKEAYAPYERPALTKGYLFPLDKKPARLPGFHTCVGSGGERQTPEW  129 (469)
Q Consensus        50 ~~~~vvIIGgG~AGl~aA~~L~~~g~~~~~V~vie~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  129 (469)
                      ..++|+|||||-+++-.|..|.+..-   +|+++-+.+.+...     +        ..              ..+..+.
T Consensus        26 ~~k~V~VvGgGdsA~e~A~~L~~~a~---~V~li~r~~~~~~~-----~--------~~--------------~~~~~~~   75 (126)
T d1trba2          26 RNQKVAVIGGGNTAVEEALYLSNIAS---EVHLIHRRDGFRAE-----K--------IL--------------IKRLMDK   75 (126)
T ss_dssp             TTSEEEEECSSHHHHHHHHHHTTTSS---EEEEECSSSSCCCC-----H--------HH--------------HHHHHHH
T ss_pred             CCCEEEEECCCHHHHHHHHHHhhcCC---cEEEEeecccccch-----h--------HH--------------HHHHHHh
Confidence            45799999999999999999998754   89999765532100     0        00              0112233


Q ss_pred             HHHCCcEEEeCCcEEEEeCCCc---EEEeCCC------eEEEeccEEeccC
Q 012165          130 YKEKGIEMIYQDPVTSIDIEKQ---TLITNSG------KLLKYGSLIVATG  171 (469)
Q Consensus       130 ~~~~~i~~~~~~~v~~id~~~~---~v~~~~g------~~~~yd~lVlAtG  171 (469)
                      ....++.++.++.+..+..++.   .|++.+.      ++++.|.|+++.|
T Consensus        76 ~~~~~i~~~~~~~v~~i~G~~~~v~~v~l~~~~~~e~~~~l~~dgvFv~iG  126 (126)
T d1trba2          76 VENGNIILHTNRTLEEVTGDQMGVTGVRLRDTQNSDNIESLDVAGLFVAIG  126 (126)
T ss_dssp             HHTSSEEEECSCEEEEEEECSSSEEEEEEECCTTCCCCEEEECSEEEECSC
T ss_pred             hcccceeEecceEEEEEECCCCceEEEEEEECCCCceEEEEECCEEEEEeC
Confidence            3457888999989999887654   3444432      4588999999877

>d1fl2a2 c.3.1.5 (A:326-451) Alkyl hydroperoxide reductase subunit F (AhpF), C-terminal domains {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Alkyl hydroperoxide reductase subunit F (AhpF), C-terminal domains
species: Escherichia coli [TaxId: 562]

Probab=97.28  E-value=0.00024  Score=55.60  Aligned_cols=88  Identities=16%  Similarity=0.256  Sum_probs=62.0

Q ss_pred             CCCcEEEEcCcHHHHHHHHHHHHcCCCCCcEEEEcCCCCCCCCCCCCcccccCCCCCCCCCCCCCccccCCCCCCCCHhH
Q 012165           50 ENREFVIVGGGNAAGYAARTFVEHGMADGRLCIVSKEAYAPYERPALTKGYLFPLDKKPARLPGFHTCVGSGGERQTPEW  129 (469)
Q Consensus        50 ~~~~vvIIGgG~AGl~aA~~L~~~g~~~~~V~vie~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  129 (469)
                      ..++|+|||||.+++-.|..|.+...   +|+||.+.+.+  .   .+                          ....+.
T Consensus        29 ~gk~V~VvGgG~sA~~~A~~L~~~a~---~V~li~r~~~~--~---~~--------------------------~~~~~~   74 (126)
T d1fl2a2          29 KGKRVAVIGGGNSGVEAAIDLAGIVE---HVTLLEFAPEM--K---AD--------------------------QVLQDK   74 (126)
T ss_dssp             BTCEEEEECCSHHHHHHHHHHHTTBS---EEEEECSSSSC--C---SC--------------------------HHHHHH
T ss_pred             CCceEEEEeCCHHHHHHHHhhhccCC---ceEEEeccccc--c---cc--------------------------cccccc
Confidence            45899999999999999999998753   89999765432  0   00                          011222


Q ss_pred             HH-HCCcEEEeCCcEEEEeCCCc---EEEeC---CC--eEEEeccEEeccC
Q 012165          130 YK-EKGIEMIYQDPVTSIDIEKQ---TLITN---SG--KLLKYGSLIVATG  171 (469)
Q Consensus       130 ~~-~~~i~~~~~~~v~~id~~~~---~v~~~---~g--~~~~yd~lVlAtG  171 (469)
                      +. ..+|++++++++..+..++.   .+++.   +|  ++++.|.|+++.|
T Consensus        75 ~~~~~~I~v~~~~~v~~i~G~~~~v~~v~l~~~~tge~~~l~vdgvFv~IG  125 (126)
T d1fl2a2          75 LRSLKNVDIILNAQTTEVKGDGSKVVGLEYRDRVSGDIHNIELAGIFVQIG  125 (126)
T ss_dssp             HHTCTTEEEESSEEEEEEEESSSSEEEEEEEETTTCCEEEEECSEEEECSC
T ss_pred             cccccceeEEcCcceEEEEccccceeeEEEEECCCCCEEEEECCEEEEEeC
Confidence            33 35799999999999887643   24443   23  3689999999987

>d1chua2 c.3.1.4 (A:2-237,A:354-422) L-aspartate oxidase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: Succinate dehydrogenase/fumarate reductase flavoprotein N-terminal domain
domain: L-aspartate oxidase
species: Escherichia coli [TaxId: 562]

Probab=97.27  E-value=7.5e-05  Score=68.37  Aligned_cols=35  Identities=20%  Similarity=0.337  Sum_probs=30.4

Q ss_pred             CCcEEEEcCcHHHHHHHHHHHHcCCCCCcEEEEcCCCCC
Q 012165           51 NREFVIVGGGNAAGYAARTFVEHGMADGRLCIVSKEAYA   89 (469)
Q Consensus        51 ~~~vvIIGgG~AGl~aA~~L~~~g~~~~~V~vie~~~~~   89 (469)
                      .+||||||+|+|||+||.++++.+    +|+|||+.+..
T Consensus         7 ~~DVvVVG~G~AGl~AA~~a~~~g----~V~llEK~~~~   41 (305)
T d1chua2           7 SCDVLIIGSGAAGLSLALRLADQH----QVIVLSKGPVT   41 (305)
T ss_dssp             ECSEEEECCSHHHHHHHHHHTTTS----CEEEECSSCTT
T ss_pred             cCCEEEECccHHHHHHHHHhhcCC----CEEEEECCCCC
Confidence            589999999999999999987654    69999998643

>d2f5va1 c.3.1.2 (A:43-354,A:553-619) Pyranose 2-oxidase {White-rot fungus (Peniophora sp. SG) [TaxId: 204723]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD-linked reductases, N-terminal domain
domain: Pyranose 2-oxidase
species: White-rot fungus (Peniophora sp. SG) [TaxId: 204723]

Probab=97.26  E-value=0.0004  Score=64.93  Aligned_cols=26  Identities=38%  Similarity=0.511  Sum_probs=23.6

Q ss_pred             eEEEEcCChHHHHHHHHHHhCCCeEe
Q 012165          209 KVVVVGGGYIGMEVAAAAVGWKLDTT  234 (469)
Q Consensus       209 ~vvVvG~G~~g~e~A~~l~~~g~~v~  234 (469)
                      .++|||+|..|+-+|..|++.|.+|.
T Consensus         6 DviIVGsG~aG~v~A~~La~~G~kVl   31 (379)
T d2f5va1           6 DVVIVGSGPIGCTYARELVGAGYKVA   31 (379)
T ss_dssp             EEEEECCSHHHHHHHHHHHHTTCEEE
T ss_pred             cEEEECcCHHHHHHHHHHhhCCCeEE
Confidence            58999999999999999999887775

>d1k0ia1 c.3.1.2 (A:1-173,A:276-394) p-Hydroxybenzoate hydroxylase, PHBH {Pseudomonas aeruginosa [TaxId: 287]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD-linked reductases, N-terminal domain
domain: p-Hydroxybenzoate hydroxylase, PHBH
species: Pseudomonas aeruginosa [TaxId: 287]

Probab=97.25  E-value=0.0005  Score=61.97  Aligned_cols=106  Identities=20%  Similarity=0.213  Sum_probs=70.5

Q ss_pred             eEEEEcCChHHHHHHHHHHhCCCeEe------------------------------------------------------
Q 012165          209 KVVVVGGGYIGMEVAAAAVGWKLDTT------------------------------------------------------  234 (469)
Q Consensus       209 ~vvVvG~G~~g~e~A~~l~~~g~~v~------------------------------------------------------  234 (469)
                      +|+|||+|++|+-+|..|++.|.++.                                                      
T Consensus         4 ~V~IvGaGp~Gl~~A~~L~~~G~~v~vlE~~~~~~~~~~~~~~~l~~~~~~~l~~lg~~~~l~~~~~~~~~~~~~~~~~~   83 (292)
T d1k0ia1           4 QVAIIGAGPSGLLLGQLLHKAGIDNVILERQTPDYVLGRIRAGVLEQGMVDLLREAGVDRRMARDGLVHEGVEIAFAGQR   83 (292)
T ss_dssp             SEEEECCSHHHHHHHHHHHHHTCCEEEECSSCHHHHHTCCCCCEECHHHHHHHHHTTCCHHHHHHCEEESCEEEEETTEE
T ss_pred             CEEEECcCHHHHHHHHHHHHCCCCEEEEeCCCCCCCCCCceEEEECHHHHHHHHHcCchHHHHhhcccccceEEEecccc
Confidence            79999999999999999999999886                                                      


Q ss_pred             ------------------------eeHHHHHHcCcEEEcCCeEEEEEeCCCCcEEEEEc-CCCC--EEeCCEEEEccCCc
Q 012165          235 ------------------------RYEQLYQQNGVKFVKGASIKNLEAGSDGRVAAVKL-EDGS--TIDADTIVIGIGAK  287 (469)
Q Consensus       235 ------------------------~~~~~l~~~gV~~~~~~~v~~i~~~~~~~v~~v~~-~~g~--~i~~D~vi~a~G~~  287 (469)
                                              .+.+.+++.+..++...........++..+ .|.+ .+|+  ++.+|+||.|-|.+
T Consensus        84 ~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~v~~~~~g~~~~i~a~~vVgADG~~  162 (292)
T d1k0ia1          84 RRIDLKRLSGGKTVTVYGQTEVTRDLMEAREACGATTVYQAAEVRLHDLQGERP-YVTFERDGERLRLDCDYIAGCDGFH  162 (292)
T ss_dssp             EEECHHHHHTSCCEEECCHHHHHHHHHHHHHHTTCEEESSCEEEEEECTTSSSC-EEEEEETTEEEEEECSEEEECCCTT
T ss_pred             cccccccccccccceeecHHHHHHHHHHHHHhCCCcEEEcceeeeeeeeccCce-EEEEecCCcEEEEEeCEEEECCCCC
Confidence                                    334455566777777766555543333333 3433 4553  57899999999987


Q ss_pred             cCCchhhhcCCcccCCCEEeCCCCCCCCCceEEeccccccCC
Q 012165          288 PTVSPFERVGLNSSVGGIQVDGQFRTRMPGIFAIGDVAAFPL  329 (469)
Q Consensus       288 p~~~~~~~~gl~~~~g~i~Vd~~~~t~~~~Vfa~GD~a~~~~  329 (469)
                      ....  +..+...            ......+.+||++....
T Consensus       163 S~vR--~~i~~~~------------~~~~~~~~~~~~~~~~~  190 (292)
T d1k0ia1         163 GISR--QSIPAER------------MQHGRLFLAGDAAHIVP  190 (292)
T ss_dssp             CSTG--GGSCGGG------------SEETTEEECGGGTEECC
T ss_pred             Cccc--ceeeecc------------ccccccccceeeeeecC
Confidence            6422  1111111            12356778888876443

>d3coxa1 c.3.1.2 (A:5-318,A:451-506) Cholesterol oxidase of GMC family {Brevibacterium sterolicum [TaxId: 1702]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD-linked reductases, N-terminal domain
domain: Cholesterol oxidase of GMC family
species: Brevibacterium sterolicum [TaxId: 1702]

Probab=97.20  E-value=0.00014  Score=68.29  Aligned_cols=37  Identities=19%  Similarity=0.289  Sum_probs=33.1

Q ss_pred             CCCCcEEEEcCcHHHHHHHHHHHHcCCCCCcEEEEcCCCC
Q 012165           49 NENREFVIVGGGNAAGYAARTFVEHGMADGRLCIVSKEAY   88 (469)
Q Consensus        49 ~~~~~vvIIGgG~AGl~aA~~L~~~g~~~~~V~vie~~~~   88 (469)
                      ...+|+||||+|++|+.+|.+|++.|+   +|+|+|+...
T Consensus         5 ~~~~dvIVVGsG~aG~v~A~rLaeaG~---~VlvLEaG~~   41 (370)
T d3coxa1           5 GDRVPALVIGSGYGGAVAALRLTQAGI---PTQIVEMGRS   41 (370)
T ss_dssp             TCEEEEEEECCSHHHHHHHHHHHHTTC---CEEEECSSCC
T ss_pred             CCCCCEEEECcCHHHHHHHHHHHHCCC---eEEEEeCCCC
Confidence            456899999999999999999999987   7999998653

>d1v59a3 d.87.1.1 (A:356-478) Dihydrolipoamide dehydrogenase {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a+b)
fold: CO dehydrogenase flavoprotein C-domain-like
superfamily: FAD/NAD-linked reductases, dimerisation (C-terminal) domain
family: FAD/NAD-linked reductases, dimerisation (C-terminal) domain
domain: Dihydrolipoamide dehydrogenase
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=97.19  E-value=0.00013  Score=56.81  Aligned_cols=64  Identities=14%  Similarity=0.104  Sum_probs=50.1

Q ss_pred             cEEEEEEe--CCEEEEEEeecCChHHhHHHHH-HHhCCCCCCh--hhhcCCCcHHHHHHHHHhcCCccc
Q 012165          404 KIATFWID--SGKLKGVLVESGSPEEFQLLPT-LARSQPFVDK--AKLQQASSVEEALEIARAALPVEA  467 (469)
Q Consensus       404 ~~~~~~~~--~~~l~g~~~~~~~~~~~~~~~~-~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~  467 (469)
                      .|.|++++  +++|+|+++++++++++...-. +++++.+++.  ..+..+||+.|++++|++++++++
T Consensus        52 G~~Kli~d~~~~~ilGa~ivG~~A~elI~~~alai~~~~t~~~l~~~i~~hPT~sE~~~~Aa~~~~~~~  120 (123)
T d1v59a3          52 GFVKILIDSKTERILGAHIIGPNAGEMIAEAGLALEYGASAEDVARVCHAHPTLSEAFKEANMAAYDKA  120 (123)
T ss_dssp             CEEEEEEETTTCBEEEEEEEETTHHHHHHHHHHHHHTTCBHHHHHTSCCCTTCTTHHHHHHHHHHHSCC
T ss_pred             EEEEEEEECCCCEEEEEEEEchHHHHHHHHHHHHHHcCCcHHHHHhcccCCCcHHHHHHHHHHHHcCCC
Confidence            47777765  5899999998888877666554 5688887763  234779999999999999988875

>d1n4wa1 c.3.1.2 (A:9-318,A:451-507) Cholesterol oxidase of GMC family {Streptomyces sp. [TaxId: 1931]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD-linked reductases, N-terminal domain
domain: Cholesterol oxidase of GMC family
species: Streptomyces sp. [TaxId: 1931]

Probab=97.11  E-value=0.00019  Score=67.39  Aligned_cols=34  Identities=21%  Similarity=0.290  Sum_probs=31.1

Q ss_pred             CcEEEEcCcHHHHHHHHHHHHcCCCCCcEEEEcCCCC
Q 012165           52 REFVIVGGGNAAGYAARTFVEHGMADGRLCIVSKEAY   88 (469)
Q Consensus        52 ~~vvIIGgG~AGl~aA~~L~~~g~~~~~V~vie~~~~   88 (469)
                      .||||||+|++|+.+|.+|++.|+   +|+|+|+...
T Consensus         3 v~VIVVGsG~aG~v~A~rLaeaG~---~VlvLEaG~~   36 (367)
T d1n4wa1           3 VPAVVIGTGYGAAVSALRLGEAGV---QTLMLEMGQL   36 (367)
T ss_dssp             EEEEEECCSHHHHHHHHHHHHTTC---CEEEEESSCC
T ss_pred             CeEEEeCcCHHHHHHHHHHHHCcC---eEEEEecCCC
Confidence            489999999999999999999987   7999999754

>d1kdga1 c.3.1.2 (A:215-512,A:694-755) Flavoprotein domain of flavocytochrome cellobiose dehydrogenase (CDH), FAD-binding domain {Fungus (Phanerochaete chrysosporium) [TaxId: 5306]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD-linked reductases, N-terminal domain
domain: Flavoprotein domain of flavocytochrome cellobiose dehydrogenase (CDH), FAD-binding domain
species: Fungus (Phanerochaete chrysosporium) [TaxId: 5306]

Probab=97.09  E-value=0.00019  Score=67.35  Aligned_cols=35  Identities=23%  Similarity=0.426  Sum_probs=32.0

Q ss_pred             CCcEEEEcCcHHHHHHHHHHHHcCCCCCcEEEEcCCCC
Q 012165           51 NREFVIVGGGNAAGYAARTFVEHGMADGRLCIVSKEAY   88 (469)
Q Consensus        51 ~~~vvIIGgG~AGl~aA~~L~~~g~~~~~V~vie~~~~   88 (469)
                      .||+||||+|+||..+|.+|.+.|.   +|+|+|+...
T Consensus         2 ~YD~IIVGsG~aG~v~A~rLae~g~---~VlvLEaG~~   36 (360)
T d1kdga1           2 PYDYIIVGAGPGGIIAADRLSEAGK---KVLLLERGGP   36 (360)
T ss_dssp             CEEEEEECCSHHHHHHHHHHHHTTC---CEEEECSSCC
T ss_pred             cCCEEEECcCHHHHHHHHHHhhCCC---eEEEEEccCC
Confidence            5899999999999999999999886   7999999853

>d2gv8a2 c.3.1.5 (A:181-287) Flavin-dependent monoxygenase SPBP16F5.08c {Schizosaccharomyces pombe [TaxId: 4896]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Flavin-dependent monoxygenase SPBP16F5.08c
species: Schizosaccharomyces pombe [TaxId: 4896]

Probab=97.01  E-value=0.0012  Score=49.73  Aligned_cols=77  Identities=16%  Similarity=0.223  Sum_probs=52.2

Q ss_pred             CCCCcEEEEcCcHHHHHHHHHHHHcCCCCCcEEEEcCCCCCCCCCCCCcccccCCCCCCCCCCCCCccccCCCCCCCCHh
Q 012165           49 NENREFVIVGGGNAAGYAARTFVEHGMADGRLCIVSKEAYAPYERPALTKGYLFPLDKKPARLPGFHTCVGSGGERQTPE  128 (469)
Q Consensus        49 ~~~~~vvIIGgG~AGl~aA~~L~~~g~~~~~V~vie~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  128 (469)
                      -..++|+|||+|.+|+-.|..|.+..-   +++++...+...          ..                          
T Consensus        30 f~gK~VlVVG~g~Sa~dia~~l~~~ak---~v~~~~~r~~~~----------~~--------------------------   70 (107)
T d2gv8a2          30 FVGESVLVVGGASSANDLVRHLTPVAK---HPIYQSLLGGGD----------IQ--------------------------   70 (107)
T ss_dssp             GTTCCEEEECSSHHHHHHHHHHTTTSC---SSEEEECTTCCS----------CB--------------------------
T ss_pred             cCCCeEEEECCCCCHHHHHHHHHHhcC---EEEEEEecCccc----------cc--------------------------
Confidence            456899999999999999999988753   455544322110          00                          


Q ss_pred             HHHHCCcEEEeCCcEEEEeCCCcEEEeCCCeEEE-eccEEec
Q 012165          129 WYKEKGIEMIYQDPVTSIDIEKQTLITNSGKLLK-YGSLIVA  169 (469)
Q Consensus       129 ~~~~~~i~~~~~~~v~~id~~~~~v~~~~g~~~~-yd~lVlA  169 (469)
                         ..++...  ..+..++...+.+++.||+.+. .|++|+|
T Consensus        71 ---~~~~~~~--~~i~~~~~~~~~v~~~dG~~~~~vD~Ii~C  107 (107)
T d2gv8a2          71 ---NESLQQV--PEITKFDPTTREIYLKGGKVLSNIDRVIYC  107 (107)
T ss_dssp             ---CSSEEEE--CCEEEEETTTTEEEETTTEEECCCSEEEEC
T ss_pred             ---cccceec--CCeeEEecCCCEEEEcCCCEEeCCCEEEEC
Confidence               0011112  2466777888899999999876 6999986

>d3lada3 d.87.1.1 (A:349-472) Dihydrolipoamide dehydrogenase {Azotobacter vinelandii [TaxId: 354]}

class: Alpha and beta proteins (a+b)
fold: CO dehydrogenase flavoprotein C-domain-like
superfamily: FAD/NAD-linked reductases, dimerisation (C-terminal) domain
family: FAD/NAD-linked reductases, dimerisation (C-terminal) domain
domain: Dihydrolipoamide dehydrogenase
species: Azotobacter vinelandii [TaxId: 354]

Probab=96.92  E-value=0.00041  Score=54.03  Aligned_cols=64  Identities=19%  Similarity=0.135  Sum_probs=49.9

Q ss_pred             cEEEEEEe--CCEEEEEEeecCChHHhHHH-HHHHhCCCCCCh-h-hhcCCCcHHHHHHHHHhcCCccc
Q 012165          404 KIATFWID--SGKLKGVLVESGSPEEFQLL-PTLARSQPFVDK-A-KLQQASSVEEALEIARAALPVEA  467 (469)
Q Consensus       404 ~~~~~~~~--~~~l~g~~~~~~~~~~~~~~-~~~~~~~~~~~~-~-~~~~~~~~~~~~~~~~~~~~~~~  467 (469)
                      .|.|++++  +++|+|++++++++.++... ..+++.+.+++. . ....|||+.|+++.|++++.+++
T Consensus        52 G~vKlv~d~~t~~ILGa~ivg~~A~elI~~~~~ai~~~~t~~~l~~~i~~hPT~sE~l~~Aa~~~~~~~  120 (124)
T d3lada3          52 GFVKVIADAKTDRVLGVHVIGPSAAELVQQGAIAMEFGTSAEDLGMMVFAHPALSEALHEAALAVSGHA  120 (124)
T ss_dssp             CEEEEEEETTTCBEEEEEEEETTHHHHHHHHHHHHHHTCBHHHHHTSCCCSSCSHHHHHHHHHHHTTCC
T ss_pred             eEEEEEEECCCCEEEEEEEEcccHHHHHHHHHHHHHcCCCHHHHHhCCccCCCHHHHHHHHHHHhcCCC
Confidence            47777774  59999999988888776554 456788887763 2 24678999999999999988765

>d1gpea1 c.3.1.2 (A:1-328,A:525-587) Glucose oxidase {Penicillium amagasakiense [TaxId: 63559]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD-linked reductases, N-terminal domain
domain: Glucose oxidase
species: Penicillium amagasakiense [TaxId: 63559]

Probab=96.89  E-value=0.00037  Score=66.06  Aligned_cols=39  Identities=21%  Similarity=0.406  Sum_probs=33.6

Q ss_pred             CCCCcEEEEcCcHHHHHHHHHHHHcCCCCCcEEEEcCCCCC
Q 012165           49 NENREFVIVGGGNAAGYAARTFVEHGMADGRLCIVSKEAYA   89 (469)
Q Consensus        49 ~~~~~vvIIGgG~AGl~aA~~L~~~g~~~~~V~vie~~~~~   89 (469)
                      .+.||+||||||+||+.+|.+|.+.+  +.+|+|||+.+..
T Consensus        22 ~~tyD~IIVGsG~aG~vlA~rLae~~--~~~VLlLEaG~~~   60 (391)
T d1gpea1          22 GKTYDYIIAGGGLTGLTVAAKLTENP--KIKVLVIEKGFYE   60 (391)
T ss_dssp             TCEEEEEEECCSHHHHHHHHHHHTST--TCCEEEEESSCCC
T ss_pred             CCeeeEEEECcCHHHHHHHHHHHHCC--CCeEEEEcCCCCC
Confidence            34699999999999999999999875  3489999998753

>d1cjca2 c.4.1.1 (A:6-106,A:332-460) Adrenodoxin reductase of mitochondrial p450 systems {Cow (Bos taurus) [TaxId: 9913]}

class: Alpha and beta proteins (a/b)
fold: Nucleotide-binding domain
superfamily: Nucleotide-binding domain
family: N-terminal domain of adrenodoxin reductase-like
domain: Adrenodoxin reductase of mitochondrial p450 systems
species: Cow (Bos taurus) [TaxId: 9913]

Probab=96.89  E-value=0.00036  Score=60.65  Aligned_cols=71  Identities=18%  Similarity=0.286  Sum_probs=49.7

Q ss_pred             CeEEEEcCChHHHHHHHHHHhC--CCeEe----------------------------eeHHHHHHcCcEEEcCCeEEEEE
Q 012165          208 KKVVVVGGGYIGMEVAAAAVGW--KLDTT----------------------------RYEQLYQQNGVKFVKGASIKNLE  257 (469)
Q Consensus       208 ~~vvVvG~G~~g~e~A~~l~~~--g~~v~----------------------------~~~~~l~~~gV~~~~~~~v~~i~  257 (469)
                      .+|+|||+|+.|+.+|..|++.  +.+|+                            .....+++.|++++.++.+..  
T Consensus         2 ~kv~iIGaGpaGl~aA~~L~~~~~~~~V~v~e~~~~~gG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~--   79 (230)
T d1cjca2           2 PQICVVGSGPAGFYTAQHLLKHHSRAHVDIYEKQLVPFGLVRFGVAPDHPEVKNVINTFTQTARSDRCAFYGNVEVGR--   79 (230)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHHCSSCEEEEECSSSSSCTHHHHTSCTTCGGGGGHHHHHHHHHTSTTEEEEBSCCBTT--
T ss_pred             CeEEEECccHHHHHHHHHHHhcCCCCeEEEEeCCCCCCceehhhccccccccccchhhhhhhhhcCCeeEEeeEEeCc--
Confidence            3899999999999999999764  66776                            334566778889888765411  


Q ss_pred             eCCCCcEEEEEcCCCCEEeCCEEEEccCCccC
Q 012165          258 AGSDGRVAAVKLEDGSTIDADTIVIGIGAKPT  289 (469)
Q Consensus       258 ~~~~~~v~~v~~~~g~~i~~D~vi~a~G~~p~  289 (469)
                         +-.  ...+    .-.+|.+++|+|..+.
T Consensus        80 ---~~~--~~~l----~~~~d~v~~a~Ga~~~  102 (230)
T d1cjca2          80 ---DVT--VQEL----QDAYHAVVLSYGAEDK  102 (230)
T ss_dssp             ---TBC--HHHH----HHHSSEEEECCCCCEE
T ss_pred             ---ccc--HHHH----HhhhceEEEEeecccc
Confidence               100  0011    1258999999998764

>d1kifa1 c.4.1.2 (A:1-194,A:288-339) D-aminoacid oxidase, N-terminal domain {Pig (Sus scrofa) [TaxId: 9823]}

class: Alpha and beta proteins (a/b)
fold: Nucleotide-binding domain
superfamily: Nucleotide-binding domain
family: D-aminoacid oxidase, N-terminal domain
domain: D-aminoacid oxidase, N-terminal domain
species: Pig (Sus scrofa) [TaxId: 9823]

Probab=96.88  E-value=0.00017  Score=63.06  Aligned_cols=35  Identities=14%  Similarity=0.073  Sum_probs=27.7

Q ss_pred             cEEEEcCcHHHHHHHHHHHHcCCCC---CcEEEEcCCC
Q 012165           53 EFVIVGGGNAAGYAARTFVEHGMAD---GRLCIVSKEA   87 (469)
Q Consensus        53 ~vvIIGgG~AGl~aA~~L~~~g~~~---~~V~vie~~~   87 (469)
                      +|+|||||++|+++|.+|+++|++-   .++++++++.
T Consensus         2 kV~VIGaGi~GlstA~~L~~~G~~v~v~e~~~i~~~~~   39 (246)
T d1kifa1           2 RVVVIGAGVIGLSTALCIHERYHSVLQPLDVKVYADRF   39 (246)
T ss_dssp             EEEEECCSHHHHHHHHHHHHHHTTTSSSCEEEEEESCC
T ss_pred             EEEEECchHHHHHHHHHHHHCCCCceEEeeeeecccCC
Confidence            5999999999999999999999721   2456666543

>d1vdca2 c.3.1.5 (A:118-243) Thioredoxin reductase {Mouse-ear cress (Arabidopsis thaliana) [TaxId: 3702]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Thioredoxin reductase
species: Mouse-ear cress (Arabidopsis thaliana) [TaxId: 3702]

Probab=96.86  E-value=0.00058  Score=53.52  Aligned_cols=87  Identities=21%  Similarity=0.307  Sum_probs=59.8

Q ss_pred             CCCcEEEEcCcHHHHHHHHHHHHcCCCCCcEEEEcCCCCCCCCCCCCcccccCCCCCCCCCCCCCccccCCCCCCCCHhH
Q 012165           50 ENREFVIVGGGNAAGYAARTFVEHGMADGRLCIVSKEAYAPYERPALTKGYLFPLDKKPARLPGFHTCVGSGGERQTPEW  129 (469)
Q Consensus        50 ~~~~vvIIGgG~AGl~aA~~L~~~g~~~~~V~vie~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  129 (469)
                      ..++|+|||||-+++-.|..|++..-   +|+||-+.+.+.-+     .                         ....+.
T Consensus        33 rgk~V~VvGgGdsA~e~A~~L~~~a~---~V~li~r~~~~ra~-----~-------------------------~~~~~l   79 (130)
T d1vdca2          33 RNKPLAVIGGGDSAMEEANFLTKYGS---KVYIIHRRDAFRAS-----K-------------------------IMQQRA   79 (130)
T ss_dssp             TTSEEEEECCSHHHHHHHHHHTTTSS---EEEEECSSSSCCSC-----H-------------------------HHHHHH
T ss_pred             CCCEEEEEcCchHHHHHHHHHhCCCC---cEEEEEeccccccc-----h-------------------------hhhhcc
Confidence            56899999999999999999998753   89999776542100     0                         011223


Q ss_pred             HHHCCcEEEeCCcEEEEeCCCc-----EEEeC---CC--eEEEeccEEec
Q 012165          130 YKEKGIEMIYQDPVTSIDIEKQ-----TLITN---SG--KLLKYGSLIVA  169 (469)
Q Consensus       130 ~~~~~i~~~~~~~v~~id~~~~-----~v~~~---~g--~~~~yd~lVlA  169 (469)
                      ....+|++++++++..+.-++.     .+.+.   ++  ++++.|.|+||
T Consensus        80 ~~~~nI~v~~~~~v~~i~Gd~~~~~v~~v~l~~~~tge~~~l~~dGvFVa  129 (130)
T d1vdca2          80 LSNPKIDVIWNSSVVEAYGDGERDVLGGLKVKNVVTGDVSDLKVSGLFFA  129 (130)
T ss_dssp             HTCTTEEEECSEEEEEEEESSSSSSEEEEEEEETTTCCEEEEECSEEEEC
T ss_pred             ccCCceEEEeccEEEEEEccCCcccEEEEEEEECCCCCEEEEECCEEEEE
Confidence            3455799999999988865532     23332   23  46889998887

>d1djqa3 c.4.1.1 (A:341-489,A:646-729) Trimethylamine dehydrogenase, middle domain {Methylophilus methylotrophus, w3a1 [TaxId: 17]}

class: Alpha and beta proteins (a/b)
fold: Nucleotide-binding domain
superfamily: Nucleotide-binding domain
family: N-terminal domain of adrenodoxin reductase-like
domain: Trimethylamine dehydrogenase, middle domain
species: Methylophilus methylotrophus, w3a1 [TaxId: 17]

Probab=96.85  E-value=4.9e-05  Score=66.75  Aligned_cols=30  Identities=23%  Similarity=0.317  Sum_probs=28.0

Q ss_pred             hcCCeEEEEcCChHHHHHHHHHHhCCCeEe
Q 012165          205 EKAKKVVVVGGGYIGMEVAAAAVGWKLDTT  234 (469)
Q Consensus       205 ~~~~~vvVvG~G~~g~e~A~~l~~~g~~v~  234 (469)
                      ..+++|+|||+|+.|+.+|..|+++|.+++
T Consensus        47 ~~~k~VvIIGaGpAGl~aA~~l~~~G~~v~   76 (233)
T d1djqa3          47 KNKDSVLIVGAGPSGSEAARVLMESGYTVH   76 (233)
T ss_dssp             SSCCEEEEECCSHHHHHHHHHHHHTTCEEE
T ss_pred             cCCceEEEEcccHHHHHHHHHHHHhcccee
Confidence            357899999999999999999999999998

>d1dxla3 d.87.1.1 (A:348-470) Dihydrolipoamide dehydrogenase {Garden pea (Pisum sativum) [TaxId: 3888]}

class: Alpha and beta proteins (a+b)
fold: CO dehydrogenase flavoprotein C-domain-like
superfamily: FAD/NAD-linked reductases, dimerisation (C-terminal) domain
family: FAD/NAD-linked reductases, dimerisation (C-terminal) domain
domain: Dihydrolipoamide dehydrogenase
species: Garden pea (Pisum sativum) [TaxId: 3888]

Probab=96.78  E-value=0.00053  Score=53.26  Aligned_cols=64  Identities=14%  Similarity=0.141  Sum_probs=49.3

Q ss_pred             cEEEEEEe--CCEEEEEEeecCChHHhHHHH-HHHhCCCCCCh-hh-hcCCCcHHHHHHHHHhcCCccc
Q 012165          404 KIATFWID--SGKLKGVLVESGSPEEFQLLP-TLARSQPFVDK-AK-LQQASSVEEALEIARAALPVEA  467 (469)
Q Consensus       404 ~~~~~~~~--~~~l~g~~~~~~~~~~~~~~~-~~~~~~~~~~~-~~-~~~~~~~~~~~~~~~~~~~~~~  467 (469)
                      .+.|+.++  +++|+|++++++++.++...- .+++.+.+++. .. ...+||+.|+++.|++++.+++
T Consensus        52 G~~Klv~d~~~~~ilG~~ivG~~A~elI~~~~~ai~~~~t~~~l~~~i~~hPT~sE~~~~aa~~~~~~~  120 (123)
T d1dxla3          52 GLVKIIAEKETDKILGVHIMAPNAGELIHEAAIALQYDASSEDIARVCHAHPTMSEAIKEAAMATYDKP  120 (123)
T ss_dssp             CEEEEEEETTTCBEEEEEEEETTHHHHHHHHHHHHHTTCBHHHHHTSCCCSSCTTHHHHHHHHHHHSCC
T ss_pred             ceEEEEEECCCCEEEEEEEehhhHHHHHHHHHHHHHcCCcHHHHhhCCCCCCCHHHHHHHHHHHHcCCC
Confidence            36777764  489999999888887766554 45788887762 33 4678999999999999988765

>d1cf3a1 c.3.1.2 (A:3-324,A:521-583) Glucose oxidase {Aspergillus niger [TaxId: 5061]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD-linked reductases, N-terminal domain
domain: Glucose oxidase
species: Aspergillus niger [TaxId: 5061]

Probab=96.74  E-value=0.00041  Score=65.56  Aligned_cols=39  Identities=18%  Similarity=0.392  Sum_probs=33.1

Q ss_pred             CCCCcEEEEcCcHHHHHHHHHHHHcCCCCCcEEEEcCCCCC
Q 012165           49 NENREFVIVGGGNAAGYAARTFVEHGMADGRLCIVSKEAYA   89 (469)
Q Consensus        49 ~~~~~vvIIGgG~AGl~aA~~L~~~g~~~~~V~vie~~~~~   89 (469)
                      .+.||+||||||+||+.+|.+|.+.+  +.+|+|+|+.+..
T Consensus        15 ~~tyD~IIVGsG~aG~vlA~rLse~~--~~~VLvLEaG~~~   53 (385)
T d1cf3a1          15 GRTVDYIIAGGGLTGLTTAARLTENP--NISVLVIESGSYE   53 (385)
T ss_dssp             TCEEEEEEECCSHHHHHHHHHHTTST--TCCEEEEESSCCC
T ss_pred             CCeEEEEEECcCHHHHHHHHHHHHCC--CCeEEEECCCCCC
Confidence            34599999999999999999999875  3489999998653

>d1xdia2 d.87.1.1 (A:349-466) Dihydrolipoamide dehydrogenase {Mycobacterium tuberculosis [TaxId: 1773]}

class: Alpha and beta proteins (a+b)
fold: CO dehydrogenase flavoprotein C-domain-like
superfamily: FAD/NAD-linked reductases, dimerisation (C-terminal) domain
family: FAD/NAD-linked reductases, dimerisation (C-terminal) domain
domain: Dihydrolipoamide dehydrogenase
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=96.73  E-value=0.0006  Score=52.49  Aligned_cols=61  Identities=16%  Similarity=0.176  Sum_probs=46.5

Q ss_pred             cEEEEEEe--CCEEEEEEeecCChHHhHHH-HHHHhCCCCCCh--hhhcCCCcHHHHHHHHHhcCC
Q 012165          404 KIATFWID--SGKLKGVLVESGSPEEFQLL-PTLARSQPFVDK--AKLQQASSVEEALEIARAALP  464 (469)
Q Consensus       404 ~~~~~~~~--~~~l~g~~~~~~~~~~~~~~-~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~  464 (469)
                      .|.|+.++  +++|+|+++++.++.++... .-+++.+.+++.  ..+..|||+.|+++.|+++++
T Consensus        52 G~vKlv~d~~~~~ilGa~ivG~~A~elI~~~~~ai~~~~t~~~l~~~i~~hPT~sE~l~~aa~~l~  117 (118)
T d1xdia2          52 GFVKIFCRRSTGVVIGGVVVAPIASELILPIAVAVQNRITVNELAQTLAVYPSLSGSITEAARRLM  117 (118)
T ss_dssp             CEEEEEEETTTCBEEEEEEEETTHHHHHHHHHHHHHHTCBHHHHHTSBCCSSSTHHHHHHHHHHHC
T ss_pred             hheEEEEecCCCceEEEEEEcCcHHHHHHHHHHHHHcCCCHHHHhhCCCCCCCHHHHHHHHHHHHh
Confidence            36777764  48999999988888775554 455788887763  224778999999999998865

>d1lvla3 d.87.1.1 (A:336-458) Dihydrolipoamide dehydrogenase {Pseudomonas putida [TaxId: 303]}

class: Alpha and beta proteins (a+b)
fold: CO dehydrogenase flavoprotein C-domain-like
superfamily: FAD/NAD-linked reductases, dimerisation (C-terminal) domain
family: FAD/NAD-linked reductases, dimerisation (C-terminal) domain
domain: Dihydrolipoamide dehydrogenase
species: Pseudomonas putida [TaxId: 303]

Probab=96.67  E-value=0.00062  Score=52.84  Aligned_cols=63  Identities=10%  Similarity=0.006  Sum_probs=48.0

Q ss_pred             EEEEEEe--CCEEEEEEeecCChHHhHHHH-HHHhCCCCCCh--hhhcCCCcHHHHHHHHHhcCCccc
Q 012165          405 IATFWID--SGKLKGVLVESGSPEEFQLLP-TLARSQPFVDK--AKLQQASSVEEALEIARAALPVEA  467 (469)
Q Consensus       405 ~~~~~~~--~~~l~g~~~~~~~~~~~~~~~-~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~  467 (469)
                      +.++.++  +++|+|+++++.++.++...- -+++.+.+++.  .....+||++|+++.|++++..++
T Consensus        53 ~vklv~d~~t~~ILG~~ivG~~A~elI~~~~lai~~~~t~~~l~~~i~~hPT~sE~~~~aa~~~~~~~  120 (123)
T d1lvla3          53 FVRVVARRDNHLILGWQAVGVAVSELSTAFAQSLEMGACLEDVAGTIHAHPTLGEAVQEAALRALGHA  120 (123)
T ss_dssp             EEEEEEETTTCBEEEEEEEETTGGGHHHHHHHHHHHTCBHHHHHTSCCCTTCTTHHHHHHHHHHTTCC
T ss_pred             heeeeeecccccceEEEEEeCchhhHHHHHHHHHHcCCCHHHHhcCCCCCCCHHHHHHHHHHHHcCCC
Confidence            6666664  489999999888887766554 45688877763  234778999999999999887764

>d1gtea1 a.1.2.2 (A:2-183) Dihydropyrimidine dehydrogenase, N-terminal domain {Pig (Sus scrofa) [TaxId: 9823]}

class: All alpha proteins
fold: Globin-like
superfamily: alpha-helical ferredoxin
family: Dihydropyrimidine dehydrogenase, N-terminal domain
domain: Dihydropyrimidine dehydrogenase, N-terminal domain
species: Pig (Sus scrofa) [TaxId: 9823]

Probab=96.64  E-value=6.8e-05  Score=61.57  Aligned_cols=41  Identities=10%  Similarity=-0.140  Sum_probs=35.3

Q ss_pred             ccccccccccccccccC--CCCcccccc---cCCcccccccccccc
Q 012165            3 SVSNSLSFKHGLSLWCP--QSPSLHRIR---HSSAKNFQRRGFVVA   43 (469)
Q Consensus         3 ~~~~~~~~~~~~~~~~~--~~~~~~~~~---~~~~~~~~~~~~~~~   43 (469)
                      .++||||.+||++|+++  |+..|+|..   .+|++..+.|+..+.
T Consensus       116 ~~~NP~p~icGRVCP~~~~CE~~C~r~~~~~~pV~I~~LeRfa~D~  161 (182)
T d1gtea1         116 FSDNPLGLTCGMVCPTSDLCVGGCNLYATEEGSINIGGLQQFASEV  161 (182)
T ss_dssp             HHHCTTHHHHHHHCCGGGSGGGGCGGGGSTTCCCCHHHHHHHHHHH
T ss_pred             hccCchHHHHhccCCCcchHHHhCeecCCCCCCeeecHHHHHHHHH
Confidence            46899999999999875  999999864   589999999887765

>d1m6ia3 d.87.1.1 (A:478-608) Apoptosis-inducing factor (AIF) {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: CO dehydrogenase flavoprotein C-domain-like
superfamily: FAD/NAD-linked reductases, dimerisation (C-terminal) domain
family: FAD/NAD-linked reductases, dimerisation (C-terminal) domain
domain: Apoptosis-inducing factor (AIF)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=96.63  E-value=0.0015  Score=49.29  Aligned_cols=38  Identities=8%  Similarity=0.175  Sum_probs=31.6

Q ss_pred             cEEEEEEeCCEEEEEEeecCChHHhHHHHHHHhCCCCCC
Q 012165          404 KIATFWIDSGKLKGVLVESGSPEEFQLLPTLARSQPFVD  442 (469)
Q Consensus       404 ~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~~~~  442 (469)
                      |-+.||+++++|||++| .|--..+...|++|..+...+
T Consensus        85 KGVIFYLrd~~VVGVLL-WNvFnrm~iAR~iI~~~~~~~  122 (131)
T d1m6ia3          85 KGVIFYLRDKVVVGIVL-WNIFNRMPIARKIIKDGEQHE  122 (131)
T ss_dssp             EEEEEEEETTEEEEEEE-ESCCSCHHHHHHHHHHCCBCS
T ss_pred             ceEEEEecCCcEEEEEE-ecccCccHHHHHHHHcCCccc
Confidence            46789999999999997 677778999999997776543

>d1ju2a1 c.3.1.2 (A:1-293,A:464-521) Hydroxynitrile lyase {Almond (Prunus dulcis) [TaxId: 3755]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD-linked reductases, N-terminal domain
domain: Hydroxynitrile lyase
species: Almond (Prunus dulcis) [TaxId: 3755]

Probab=96.59  E-value=0.00043  Score=64.52  Aligned_cols=35  Identities=26%  Similarity=0.505  Sum_probs=30.8

Q ss_pred             CCCcEEEEcCcHHHHHHHHHHHHcCCCCCcEEEEcCCCC
Q 012165           50 ENREFVIVGGGNAAGYAARTFVEHGMADGRLCIVSKEAY   88 (469)
Q Consensus        50 ~~~~vvIIGgG~AGl~aA~~L~~~g~~~~~V~vie~~~~   88 (469)
                      ..||+||||+|+||+.+|.+|++. +   +|+|||+.+.
T Consensus        25 ~~YD~IIVGsG~aG~vlA~rLae~-~---kVLvLEaG~~   59 (351)
T d1ju2a1          25 GSYDYVIVGGGTSGCPLAATLSEK-Y---KVLVLERGSL   59 (351)
T ss_dssp             EEEEEEEECCSTTHHHHHHHHTTT-S---CEEEECSSBC
T ss_pred             CCccEEEECccHHHHHHHHHhcCC-C---CEEEEecCCC
Confidence            358999999999999999999875 4   7999999864

>d2jfga1 c.5.1.1 (A:1-93) UDP-N-acetylmuramoyl-L-alanine:D-glutamate ligase MurD {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: MurCD N-terminal domain
superfamily: MurCD N-terminal domain
family: MurCD N-terminal domain
domain: UDP-N-acetylmuramoyl-L-alanine:D-glutamate ligase MurD
species: Escherichia coli [TaxId: 562]

Probab=96.57  E-value=0.0013  Score=48.16  Aligned_cols=36  Identities=17%  Similarity=0.289  Sum_probs=31.5

Q ss_pred             CCCcEEEEcCcHHHHHHHHHHHHcCCCCCcEEEEcCCCC
Q 012165           50 ENREFVIVGGGNAAGYAARTFVEHGMADGRLCIVSKEAY   88 (469)
Q Consensus        50 ~~~~vvIIGgG~AGl~aA~~L~~~g~~~~~V~vie~~~~   88 (469)
                      ..++|+|+|.|-+|+++|..|.++|.   +|++.|....
T Consensus         4 ~~K~v~ViGlG~sG~s~a~~L~~~g~---~v~~~D~~~~   39 (93)
T d2jfga1           4 QGKNVVIIGLGLTGLSCVDFFLARGV---TPRVMDTRMT   39 (93)
T ss_dssp             TTCCEEEECCSHHHHHHHHHHHHTTC---CCEEEESSSS
T ss_pred             CCCEEEEEeECHHHHHHHHHHHHCCC---EEEEeeCCcC
Confidence            45789999999999999999999987   7999987554

>d2gjca1 c.3.1.6 (A:16-326) Thiazole biosynthetic enzyme Thi4 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: Thi4-like
domain: Thiazole biosynthetic enzyme Thi4
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=96.46  E-value=0.00071  Score=61.80  Aligned_cols=28  Identities=25%  Similarity=0.392  Sum_probs=24.4

Q ss_pred             CCeEEEEcCChHHHHHHHHHHhC--CCeEe
Q 012165          207 AKKVVVVGGGYIGMEVAAAAVGW--KLDTT  234 (469)
Q Consensus       207 ~~~vvVvG~G~~g~e~A~~l~~~--g~~v~  234 (469)
                      ...|+|||+|+.|+.+|..|+++  |.+|+
T Consensus        50 ~~~~~~~g~g~~g~~~a~~~~~~~~~~~~~   79 (311)
T d2gjca1          50 VSDVIIVGAGSSGLSAAYVIAKNRPDLKVC   79 (311)
T ss_dssp             EESEEEECCSHHHHHHHHHHHHHCTTSCEE
T ss_pred             CCCEEEECCCHHHHHHHHHHHHhCCCCeEE
Confidence            46799999999999999999864  77776

>d1ojta3 d.87.1.1 (A:471-598) Dihydrolipoamide dehydrogenase {Neisseria meningitidis [TaxId: 487]}

class: Alpha and beta proteins (a+b)
fold: CO dehydrogenase flavoprotein C-domain-like
superfamily: FAD/NAD-linked reductases, dimerisation (C-terminal) domain
family: FAD/NAD-linked reductases, dimerisation (C-terminal) domain
domain: Dihydrolipoamide dehydrogenase
species: Neisseria meningitidis [TaxId: 487]

Probab=96.46  E-value=0.00097  Score=52.06  Aligned_cols=63  Identities=8%  Similarity=0.037  Sum_probs=47.7

Q ss_pred             cEEEEEEe--CCEEEEEEeecCChHHhHHHH-HHHhCCCCCCh--hhhcCCCcHHHHHHHHHhcCCcc
Q 012165          404 KIATFWID--SGKLKGVLVESGSPEEFQLLP-TLARSQPFVDK--AKLQQASSVEEALEIARAALPVE  466 (469)
Q Consensus       404 ~~~~~~~~--~~~l~g~~~~~~~~~~~~~~~-~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~  466 (469)
                      .|.++.++  +|+|+|++++++++.++...- .+++.+.+++.  ...+.|||+.|++++|++.+.++
T Consensus        52 g~~Kli~d~~~g~iLGa~ivG~~A~ElI~~~~lai~~~~t~~~l~~~i~~hPT~sE~l~~Aa~~~~~~  119 (128)
T d1ojta3          52 PFTKLIFDAETGRIIGGGIVGPNGGDMIGEVCLAIEMGCDAADIGKTIHPHPTLGESIGMAAEVALGT  119 (128)
T ss_dssp             CEEEEEEETTTCBEEEEEEESTTHHHHHHHHHHHHHTTCBHHHHHTSCCCSSSSTTHHHHHHHHHHTC
T ss_pred             ceEEEEEeCCCCeEEEEEEEhhhHHHHHHHHHHHHHcCCCHHHHhhCcCcCCCHHHHHHHHHHHHcCC
Confidence            36777664  589999999888887765554 45788887763  23477899999999999887654

>d1ebda3 d.87.1.1 (A:347-461) Dihydrolipoamide dehydrogenase {Bacillus stearothermophilus [TaxId: 1422]}

class: Alpha and beta proteins (a+b)
fold: CO dehydrogenase flavoprotein C-domain-like
superfamily: FAD/NAD-linked reductases, dimerisation (C-terminal) domain
family: FAD/NAD-linked reductases, dimerisation (C-terminal) domain
domain: Dihydrolipoamide dehydrogenase
species: Bacillus stearothermophilus [TaxId: 1422]

Probab=96.37  E-value=0.002  Score=49.18  Aligned_cols=60  Identities=7%  Similarity=0.042  Sum_probs=45.0

Q ss_pred             cEEEEEEe--CCEEEEEEeecCChHHhHHHH-HHHhCCCCCCh--hhhcCCCcHHHHHHHHHhcC
Q 012165          404 KIATFWID--SGKLKGVLVESGSPEEFQLLP-TLARSQPFVDK--AKLQQASSVEEALEIARAAL  463 (469)
Q Consensus       404 ~~~~~~~~--~~~l~g~~~~~~~~~~~~~~~-~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~  463 (469)
                      .|.|+.++  +++|+|+++++.++.++...- -+++.+.+++.  .....+||+.|+++.|++.+
T Consensus        50 G~vKli~~~~~~~iLG~~ivg~~A~elI~~~~~ai~~~~t~~~l~~~i~~hPT~sE~~~~Aa~~a  114 (115)
T d1ebda3          50 GFLKLVVRKEDGVIIGAQIIGPNASDMIAELGLAIEAGMTAEDIALTIHAHPTLGEIAMEAAEVA  114 (115)
T ss_dssp             CEEEEEEETTTTEEEEEEEESTTHHHHHHHHHHHHHHTCBHHHHHHSCCCTTSSTHHHHHHHHHT
T ss_pred             EEEEEEEeCCcceEEEEEEEcCCHHHHHHHHHHHHHcCCCHHHHhhCCCCCCCHHHHHHHHHHHh
Confidence            46676664  589999999888887766554 45788887763  23467899999999998765

>d1lqta2 c.4.1.1 (A:2-108,A:325-456) Ferredoxin:NADP reductase FprA {Mycobacterium tuberculosis [TaxId: 1773]}

class: Alpha and beta proteins (a/b)
fold: Nucleotide-binding domain
superfamily: Nucleotide-binding domain
family: N-terminal domain of adrenodoxin reductase-like
domain: Ferredoxin:NADP reductase FprA
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=96.23  E-value=0.00077  Score=58.60  Aligned_cols=72  Identities=14%  Similarity=0.201  Sum_probs=51.2

Q ss_pred             CCeEEEEcCChHHHHHHHHHHhCCC-------eEe----------------------------eeHHHHHHcCcEEEcCC
Q 012165          207 AKKVVVVGGGYIGMEVAAAAVGWKL-------DTT----------------------------RYEQLYQQNGVKFVKGA  251 (469)
Q Consensus       207 ~~~vvVvG~G~~g~e~A~~l~~~g~-------~v~----------------------------~~~~~l~~~gV~~~~~~  251 (469)
                      +.+|+|||+|++|+.+|..|++.|.       +|+                            .....+.+.|++++++.
T Consensus         2 p~~VaVIGaGpaGL~aA~~L~~~G~~~~~~~~~V~v~E~~~~~GG~~~~gi~p~~~~~~~~~~~~~~~~~~~g~~~~~~~   81 (239)
T d1lqta2           2 PYYIAIVGSGPSAFFAAASLLKAADTTEDLDMAVDMLEMLPTPWGLVRSGVAPDHPKIKSISKQFEKTAEDPRFRFFGNV   81 (239)
T ss_dssp             CEEEEEECCSHHHHHHHHHHHHHHHHSTTCCEEEEEEESSSSCSTHHHHTSCTTCTGGGGGHHHHHHHHTSTTEEEEESC
T ss_pred             CcEEEEECcCHHHHHHHHHHHHcCCccccCCCceEEEecCCCCCCeeeeccCcccccchhhhhhhhhhhccCCceEEEEE
Confidence            4689999999999999999998873       455                            33456677889998886


Q ss_pred             eEEEEEeCCCCcEEEEEcCCCCEEeCCEEEEccCCccC
Q 012165          252 SIKNLEAGSDGRVAAVKLEDGSTIDADTIVIGIGAKPT  289 (469)
Q Consensus       252 ~v~~i~~~~~~~v~~v~~~~g~~i~~D~vi~a~G~~p~  289 (469)
                      .+....          .++ .-...+|.+++++|..+.
T Consensus        82 ~v~~~~----------~~~-~~~~~~~~v~~atGa~~~  108 (239)
T d1lqta2          82 VVGEHV----------QPG-ELSERYDAVIYAVGAQSR  108 (239)
T ss_dssp             CBTTTB----------CHH-HHHHHSSEEEECCCCCEE
T ss_pred             Eecccc----------chh-hhhccccceeeecCCCcc
Confidence            542111          111 112468999999998754

>d1c0pa1 c.4.1.2 (A:999-1193,A:1289-1361) D-aminoacid oxidase, N-terminal domain {Rhodotorula gracilis [TaxId: 5286]}

class: Alpha and beta proteins (a/b)
fold: Nucleotide-binding domain
superfamily: Nucleotide-binding domain
family: D-aminoacid oxidase, N-terminal domain
domain: D-aminoacid oxidase, N-terminal domain
species: Rhodotorula gracilis [TaxId: 5286]

Probab=96.17  E-value=0.0019  Score=56.55  Aligned_cols=30  Identities=30%  Similarity=0.415  Sum_probs=27.5

Q ss_pred             hcCCeEEEEcCChHHHHHHHHHHhCCCeEe
Q 012165          205 EKAKKVVVVGGGYIGMEVAAAAVGWKLDTT  234 (469)
Q Consensus       205 ~~~~~vvVvG~G~~g~e~A~~l~~~g~~v~  234 (469)
                      ...++|+|||+|..|+-.|..|+++|.+|+
T Consensus         4 ~~~~kVvVIGaGiaGl~~A~~L~~~G~~V~   33 (268)
T d1c0pa1           4 HSQKRVVVLGSGVIGLSSALILARKGYSVH   33 (268)
T ss_dssp             CCSCEEEEECCSHHHHHHHHHHHHTTCEEE
T ss_pred             CCCCcEEEECccHHHHHHHHHHHHCCCCEE
Confidence            346789999999999999999999999987

>d1jnra2 c.3.1.4 (A:2-256,A:402-502) Adenylylsulfate reductase A subunit {Archaeon Archaeoglobus fulgidus [TaxId: 2234]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: Succinate dehydrogenase/fumarate reductase flavoprotein N-terminal domain
domain: Adenylylsulfate reductase A subunit
species: Archaeon Archaeoglobus fulgidus [TaxId: 2234]

Probab=95.99  E-value=0.059  Score=49.13  Aligned_cols=27  Identities=30%  Similarity=0.500  Sum_probs=21.6

Q ss_pred             CeEEEEcCChHHHHHHHHHHh----CCCeEe
Q 012165          208 KKVVVVGGGYIGMEVAAAAVG----WKLDTT  234 (469)
Q Consensus       208 ~~vvVvG~G~~g~e~A~~l~~----~g~~v~  234 (469)
                      -.|+|||+|+.|+-.|..+++    .|.+|.
T Consensus        22 ~DVlIIG~G~AGl~AA~~aa~~~~~~G~~V~   52 (356)
T d1jnra2          22 TDILIIGGGFSGCGAAYEAAYWAKLGGLKVT   52 (356)
T ss_dssp             CSEEEECCSHHHHHHHHHHHHHHTTTTCCEE
T ss_pred             cCEEEECCCHHHHHHHHHHHHHHHhCcCEEE
Confidence            469999999999888887764    566664

>d1e5qa1 c.2.1.3 (A:2-124,A:392-450) Saccharopine reductase {Rice blast fungus (Magnaporthe grisea) [TaxId: 148305]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain
domain: Saccharopine reductase
species: Rice blast fungus (Magnaporthe grisea) [TaxId: 148305]

Probab=95.92  E-value=0.0027  Score=52.37  Aligned_cols=34  Identities=9%  Similarity=0.375  Sum_probs=31.3

Q ss_pred             CCcEEEEcCcHHHHHHHHHHHHcCCCCCcEEEEcCCC
Q 012165           51 NREFVIVGGGNAAGYAARTFVEHGMADGRLCIVSKEA   87 (469)
Q Consensus        51 ~~~vvIIGgG~AGl~aA~~L~~~g~~~~~V~vie~~~   87 (469)
                      .++|+|||+|..|..+|..|.+.|+   +|+|+++..
T Consensus         2 ~K~IliiGaG~~G~~~a~~L~~~g~---~V~v~dr~~   35 (182)
T d1e5qa1           2 TKSVLMLGSGFVTRPTLDVLTDSGI---KVTVACRTL   35 (182)
T ss_dssp             CCEEEEECCSTTHHHHHHHHHTTTC---EEEEEESCH
T ss_pred             CCEEEEECCCHHHHHHHHHHHhCCC---EEEEEECCh
Confidence            4789999999999999999999988   799999765

>d1n4wa1 c.3.1.2 (A:9-318,A:451-507) Cholesterol oxidase of GMC family {Streptomyces sp. [TaxId: 1931]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD-linked reductases, N-terminal domain
domain: Cholesterol oxidase of GMC family
species: Streptomyces sp. [TaxId: 1931]

Probab=95.92  E-value=0.018  Score=53.18  Aligned_cols=52  Identities=19%  Similarity=0.330  Sum_probs=36.0

Q ss_pred             HcCcEEEcCCeEEEEEeCCCCc-EEEEEcC--CC-----CEEeCCEEEEccCCccCCchh
Q 012165          242 QNGVKFVKGASIKNLEAGSDGR-VAAVKLE--DG-----STIDADTIVIGIGAKPTVSPF  293 (469)
Q Consensus       242 ~~gV~~~~~~~v~~i~~~~~~~-v~~v~~~--~g-----~~i~~D~vi~a~G~~p~~~~~  293 (469)
                      ..++++++++.|++|+.++++. ...|...  ++     +++.++.||+|.|.--...+|
T Consensus       231 ~gn~~i~~~t~V~~I~~~~~g~~~v~v~~~~~~~~~~~~~~i~Ak~VVLaAGai~Tp~LL  290 (367)
T d1n4wa1         231 TGKVTIQTLHQVKTIRQTKDGGYALTVEQKDTDGKLLATKEISCRYLFLGAGSLGSTELL  290 (367)
T ss_dssp             TTSEEEEESEEEEEEEECTTSSEEEEEEEECTTCCEEEEEEEEEEEEEECSHHHHHHHHH
T ss_pred             CCCeEEECCCEEEEEEEcCCCCEEEEEEEECCCCcceeEEEEecCEEEEecchhcCHHHH
Confidence            3349999999999999765543 3334332  22     368899999999976544554

>d1rp0a1 c.3.1.6 (A:7-284) Thiazole biosynthetic enzyme Thi4 {Thale cress(Arabidopsis thaliana) [TaxId: 3702]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: Thi4-like
domain: Thiazole biosynthetic enzyme Thi4
species: Thale cress(Arabidopsis thaliana) [TaxId: 3702]

Probab=95.46  E-value=0.022  Score=50.37  Aligned_cols=83  Identities=23%  Similarity=0.312  Sum_probs=58.7

Q ss_pred             cCCeEEEEcCChHHHHHHHHHHh-CCCeEe--------------------------------------------------
Q 012165          206 KAKKVVVVGGGYIGMEVAAAAVG-WKLDTT--------------------------------------------------  234 (469)
Q Consensus       206 ~~~~vvVvG~G~~g~e~A~~l~~-~g~~v~--------------------------------------------------  234 (469)
                      ....|+|||+|+.|+.+|..|++ .|.+|.                                                  
T Consensus        32 ~e~DViVIGaGpaGL~aA~~LA~~~G~~V~vlE~~~~~GG~~~~~g~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~  111 (278)
T d1rp0a1          32 AETDVVVVGAGSAGLSAAYEISKNPNVQVAIIEQSVSPGGGAWLGGQLFSAMIVRKPAHLFLDEIGVAYDEQDTYVVVKH  111 (278)
T ss_dssp             TEEEEEEECCSHHHHHHHHHHHTSTTSCEEEEESSSSCCTTTTCCSTTCCCEEEETTTHHHHHHHTCCCEECSSEEEESC
T ss_pred             cCCCEEEECCCHHHHHHHHHHHHccCCeEEEEecCCCCCCceeecCEEcCHHHHhhhHHHHHHHcCCceecCCccceecc
Confidence            35679999999999999999987 598887                                                  


Q ss_pred             -------eeHHHHHHcCcEEEcCCeEEEEEeCCCCcEEEEEc--------------CCCCEEeCCEEEEccCCccC
Q 012165          235 -------RYEQLYQQNGVKFVKGASIKNLEAGSDGRVAAVKL--------------EDGSTIDADTIVIGIGAKPT  289 (469)
Q Consensus       235 -------~~~~~l~~~gV~~~~~~~v~~i~~~~~~~v~~v~~--------------~~g~~i~~D~vi~a~G~~p~  289 (469)
                             .+.+..+..++.+..++.+..+... ++++.++..              .++..+.++.+|.++|....
T Consensus       112 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~v~gv~~~~~~~~~~~~~~~~~~~~~~~a~~vv~a~G~~~~  186 (278)
T d1rp0a1         112 AALFTSTIMSKLLARPNVKLFNAVAAEDLIVK-GNRVGGVVTNWALVAQNHHTQSCMDPNVMEAKIVVSSCGHDGP  186 (278)
T ss_dssp             HHHHHHHHHHHHHTSTTEEEEETEEEEEEEEE-TTEEEEEEEEEHHHHTCTTTSSCCCCEEEEEEEEEECCCSSST
T ss_pred             cHHHHHHHHHHHHHhCCCEEEeCCcceeeeec-CCeEEEEEeccceeeeeecccccccceeeccceEEECcCCCcc
Confidence                   1233444567778878777776643 444444432              12357889999999997643

>d1bg6a2 c.2.1.6 (A:4-187) N-(1-D-carboxylethyl)-L-norvaline dehydrogenase {Arthrobacter, strain 1c [TaxId: 1663]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: 6-phosphogluconate dehydrogenase-like, N-terminal domain
domain: N-(1-D-carboxylethyl)-L-norvaline dehydrogenase
species: Arthrobacter, strain 1c [TaxId: 1663]

Probab=95.33  E-value=0.0068  Score=50.06  Aligned_cols=34  Identities=18%  Similarity=0.265  Sum_probs=30.4

Q ss_pred             CCcEEEEcCcHHHHHHHHHHHHcCCCCCcEEEEcCCC
Q 012165           51 NREFVIVGGGNAAGYAARTFVEHGMADGRLCIVSKEA   87 (469)
Q Consensus        51 ~~~vvIIGgG~AGl~aA~~L~~~g~~~~~V~vie~~~   87 (469)
                      +++|.|||+|..|+..|..|.++|+   +|+++++.+
T Consensus         1 sk~iaIiGaG~~G~~~A~~l~~~G~---~V~~~~r~~   34 (184)
T d1bg6a2           1 SKTYAVLGLGNGGHAFAAYLALKGQ---SVLAWDIDA   34 (184)
T ss_dssp             CCEEEEECCSHHHHHHHHHHHHTTC---EEEEECSCH
T ss_pred             CCEEEEECccHHHHHHHHHHHHCCC---EEEEEECCH
Confidence            3689999999999999999999998   799988653

>d3coxa1 c.3.1.2 (A:5-318,A:451-506) Cholesterol oxidase of GMC family {Brevibacterium sterolicum [TaxId: 1702]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD-linked reductases, N-terminal domain
domain: Cholesterol oxidase of GMC family
species: Brevibacterium sterolicum [TaxId: 1702]

Probab=95.31  E-value=0.027  Score=51.99  Aligned_cols=57  Identities=11%  Similarity=0.229  Sum_probs=37.8

Q ss_pred             HHHHHHcCcEEEcCCeEEEEEeCCCCc-EEEEE-cC-CC-----CEEeCCEEEEccCCccCCchh
Q 012165          237 EQLYQQNGVKFVKGASIKNLEAGSDGR-VAAVK-LE-DG-----STIDADTIVIGIGAKPTVSPF  293 (469)
Q Consensus       237 ~~~l~~~gV~~~~~~~v~~i~~~~~~~-v~~v~-~~-~g-----~~i~~D~vi~a~G~~p~~~~~  293 (469)
                      ....+..++++++++.|++|..++++. .+.+. .. ++     +++.||.||+|.|....+.+|
T Consensus       230 ~~a~~~g~~~i~t~~~V~~I~~~~~~~~~V~v~~~~~~~~~~~~~~~~A~~VILaAGai~Tp~LL  294 (370)
T d3coxa1         230 AQAAATGKLTITTLHRVTKVAPATGSGYSVTMEQIDEQGNVVATKVVTADRVFFAAGSVGTSKLL  294 (370)
T ss_dssp             HHHHHTTCEEEECSEEEEEEEECSSSSEEEEEEEECTTSCEEEEEEEEEEEEEECSHHHHHHHHH
T ss_pred             HHHHhCCCcEEEecCcEEEEEEcCCCeEEEEEEEeCCccceeeEEEEECCEEEEeeCHHHhHHHH
Confidence            344455569999999999999765442 11222 21 22     358899999999976555554

>d1pzga1 c.2.1.5 (A:14-163) Lactate dehydrogenase {Toxoplasma gondii [TaxId: 5811]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: LDH N-terminal domain-like
domain: Lactate dehydrogenase
species: Toxoplasma gondii [TaxId: 5811]

Probab=95.28  E-value=0.012  Score=47.16  Aligned_cols=40  Identities=10%  Similarity=0.235  Sum_probs=33.4

Q ss_pred             cCCCCCCcEEEEcCcHHHHHHHHHHHHcCCCCCcEEEEcCCC
Q 012165           46 SFANENREFVIVGGGNAAGYAARTFVEHGMADGRLCIVSKEA   87 (469)
Q Consensus        46 ~~~~~~~~vvIIGgG~AGl~aA~~L~~~g~~~~~V~vie~~~   87 (469)
                      +++.++++|.|||+|.-|.++|..|...++.  ++.++|..+
T Consensus         2 ~~~~k~~KI~IIGaG~VG~~lA~~l~~~~~~--el~L~D~~~   41 (154)
T d1pzga1           2 ALVQRRKKVAMIGSGMIGGTMGYLCALRELA--DVVLYDVVK   41 (154)
T ss_dssp             CCCSCCCEEEEECCSHHHHHHHHHHHHHTCC--EEEEECSSS
T ss_pred             ccccCCCcEEEECCCHHHHHHHHHHHhCCCc--eEEEEEecc
Confidence            4556778999999999999999999988863  799998553

>d1kyqa1 c.2.1.11 (A:1-150) Bifunctional dehydrogenase/ferrochelatase Met8p, N-terminal domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Siroheme synthase N-terminal domain-like
domain: Bifunctional dehydrogenase/ferrochelatase Met8p, N-terminal domain
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=95.27  E-value=0.0042  Score=49.80  Aligned_cols=36  Identities=19%  Similarity=0.443  Sum_probs=32.0

Q ss_pred             CCCCcEEEEcCcHHHHHHHHHHHHcCCCCCcEEEEcCCC
Q 012165           49 NENREFVIVGGGNAAGYAARTFVEHGMADGRLCIVSKEA   87 (469)
Q Consensus        49 ~~~~~vvIIGgG~AGl~aA~~L~~~g~~~~~V~vie~~~   87 (469)
                      .+.++|+|||||..|+.-|..|.+.|.   +|+||+++.
T Consensus        11 l~gkrvLViGgG~va~~ka~~Ll~~GA---~VtVvap~~   46 (150)
T d1kyqa1          11 LKDKRILLIGGGEVGLTRLYKLMPTGC---KLTLVSPDL   46 (150)
T ss_dssp             CTTCEEEEEEESHHHHHHHHHHGGGTC---EEEEEEEEE
T ss_pred             eCCCEEEEECCCHHHHHHHHHHHHCCC---EEEEEeCCC
Confidence            456899999999999999999999986   899998654

>d1w4xa2 c.3.1.5 (A:155-389) Phenylacetone monooxygenase {Thermobifida fusca [TaxId: 2021]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Phenylacetone monooxygenase
species: Thermobifida fusca [TaxId: 2021]

Probab=95.10  E-value=0.029  Score=47.81  Aligned_cols=36  Identities=8%  Similarity=0.227  Sum_probs=29.0

Q ss_pred             CCCCcEEEEcCcHHHHHHHHHHHHcCCCCCcEEEEcCCC
Q 012165           49 NENREFVIVGGGNAAGYAARTFVEHGMADGRLCIVSKEA   87 (469)
Q Consensus        49 ~~~~~vvIIGgG~AGl~aA~~L~~~g~~~~~V~vie~~~   87 (469)
                      -..++|+|||+|.+|+-+|..|.+.+.   +++++-..+
T Consensus        30 ~~gK~V~VvG~G~Sa~dia~~~~~~~~---~~~~~~~~~   65 (235)
T d1w4xa2          30 FSGQRVGVIGTGSSGIQVSPQIAKQAA---ELFVFQRTP   65 (235)
T ss_dssp             CBTCEEEEECCSHHHHHHHHHHHHHBS---EEEEEESSC
T ss_pred             CCCCEEEEECCCccHHHHHHHHHhhhc---ccccccccc
Confidence            356899999999999999999999875   565554443

>d1pjqa1 c.2.1.11 (A:1-113) Siroheme synthase CysG, domain 1 {Salmonella typhimurium [TaxId: 90371]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Siroheme synthase N-terminal domain-like
domain: Siroheme synthase CysG, domain 1
species: Salmonella typhimurium [TaxId: 90371]

Probab=95.09  E-value=0.011  Score=44.60  Aligned_cols=36  Identities=36%  Similarity=0.565  Sum_probs=31.6

Q ss_pred             CCCCcEEEEcCcHHHHHHHHHHHHcCCCCCcEEEEcCCC
Q 012165           49 NENREFVIVGGGNAAGYAARTFVEHGMADGRLCIVSKEA   87 (469)
Q Consensus        49 ~~~~~vvIIGgG~AGl~aA~~L~~~g~~~~~V~vie~~~   87 (469)
                      ...++|+|||+|..|..-|..|.+.|.   +|++++++.
T Consensus        10 l~~k~vlVvG~G~va~~ka~~ll~~ga---~v~v~~~~~   45 (113)
T d1pjqa1          10 LRDRDCLIVGGGDVAERKARLLLEAGA---RLTVNALTF   45 (113)
T ss_dssp             CBTCEEEEECCSHHHHHHHHHHHHTTB---EEEEEESSC
T ss_pred             eCCCEEEEECCCHHHHHHHHHHHHCCC---eEEEEeccC
Confidence            456899999999999999999999976   899998654

>d1l7da1 c.2.1.4 (A:144-326) Nicotinamide nucleotide transhydrogenase dI component {Rhodospirillum rubrum [TaxId: 1085]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Formate/glycerate dehydrogenases, NAD-domain
domain: Nicotinamide nucleotide transhydrogenase dI component
species: Rhodospirillum rubrum [TaxId: 1085]

Probab=95.05  E-value=0.014  Score=47.66  Aligned_cols=35  Identities=20%  Similarity=0.096  Sum_probs=31.1

Q ss_pred             CCcEEEEcCcHHHHHHHHHHHHcCCCCCcEEEEcCCCC
Q 012165           51 NREFVIVGGGNAAGYAARTFVEHGMADGRLCIVSKEAY   88 (469)
Q Consensus        51 ~~~vvIIGgG~AGl~aA~~L~~~g~~~~~V~vie~~~~   88 (469)
                      +-+|+|||+|.+|+.|+....+.|-   .|+++|.+..
T Consensus        29 pa~VvViGaGvaG~~Aa~~A~~lGA---~V~v~D~~~~   63 (183)
T d1l7da1          29 PARVLVFGVGVAGLQAIATAKRLGA---VVMATDVRAA   63 (183)
T ss_dssp             CCEEEEECCSHHHHHHHHHHHHTTC---EEEEECSCST
T ss_pred             CcEEEEEcCcHHHHHHHHHHHHcCC---EEEEEeccHH
Confidence            4699999999999999999999986   8999997653

>d1pjca1 c.2.1.4 (A:136-303) L-alanine dehydrogenase {Phormidium lapideum [TaxId: 32060]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Formate/glycerate dehydrogenases, NAD-domain
domain: L-alanine dehydrogenase
species: Phormidium lapideum [TaxId: 32060]

Probab=95.03  E-value=0.013  Score=47.27  Aligned_cols=35  Identities=29%  Similarity=0.380  Sum_probs=31.0

Q ss_pred             CCCcEEEEcCcHHHHHHHHHHHHcCCCCCcEEEEcCCC
Q 012165           50 ENREFVIVGGGNAAGYAARTFVEHGMADGRLCIVSKEA   87 (469)
Q Consensus        50 ~~~~vvIIGgG~AGl~aA~~L~~~g~~~~~V~vie~~~   87 (469)
                      .+-+|+|||+|.+|+.|+..+++.|-   +|+++|.+.
T Consensus        31 ~pa~V~ViGaGvaG~~A~~~A~~lGA---~V~~~D~~~   65 (168)
T d1pjca1          31 KPGKVVILGGGVVGTEAAKMAVGLGA---QVQIFDINV   65 (168)
T ss_dssp             CCCEEEEECCSHHHHHHHHHHHHTTC---EEEEEESCH
T ss_pred             CCcEEEEECCChHHHHHHHHHhhCCC---EEEEEeCcH
Confidence            45799999999999999999999986   899998653

>d2hmva1 c.2.1.9 (A:7-140) Ktn bsu222 {Bacillus subtilis [TaxId: 1423]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Potassium channel NAD-binding domain
domain: Ktn bsu222
species: Bacillus subtilis [TaxId: 1423]

Probab=94.94  E-value=0.0085  Score=46.73  Aligned_cols=34  Identities=18%  Similarity=0.353  Sum_probs=30.6

Q ss_pred             CcEEEEcCcHHHHHHHHHHHHcCCCCCcEEEEcCCCC
Q 012165           52 REFVIVGGGNAAGYAARTFVEHGMADGRLCIVSKEAY   88 (469)
Q Consensus        52 ~~vvIIGgG~AGl~aA~~L~~~g~~~~~V~vie~~~~   88 (469)
                      |+++|||.|.-|..+|..|.+.|+   +|+++|.++.
T Consensus         1 k~~iIiG~G~~G~~la~~L~~~g~---~vvvid~d~~   34 (134)
T d2hmva1           1 KQFAVIGLGRFGGSIVKELHRMGH---EVLAVDINEE   34 (134)
T ss_dssp             CCEEEECCSHHHHHHHHHHHHTTC---CCEEEESCHH
T ss_pred             CEEEEECCCHHHHHHHHHHHHCCC---eEEEecCcHH
Confidence            579999999999999999999998   7999997753

>d1ez4a1 c.2.1.5 (A:16-162) Lactate dehydrogenase {Lactobacillus pentosus [TaxId: 1589]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: LDH N-terminal domain-like
domain: Lactate dehydrogenase
species: Lactobacillus pentosus [TaxId: 1589]

Probab=94.87  E-value=0.016  Score=46.00  Aligned_cols=38  Identities=21%  Similarity=0.371  Sum_probs=32.3

Q ss_pred             CCCCcEEEEcCcHHHHHHHHHHHHcCCCCCcEEEEcCCC
Q 012165           49 NENREFVIVGGGNAAGYAARTFVEHGMADGRLCIVSKEA   87 (469)
Q Consensus        49 ~~~~~vvIIGgG~AGl~aA~~L~~~g~~~~~V~vie~~~   87 (469)
                      ..+.+|.|||+|.-|.++|..|...+. -.++.++|.+.
T Consensus         3 ~~~~KI~IIGaG~VG~~~A~~l~~~~~-~~elvL~D~~~   40 (146)
T d1ez4a1           3 PNHQKVVLVGDGAVGSSYAFAMAQQGI-AEEFVIVDVVK   40 (146)
T ss_dssp             TTBCEEEEECCSHHHHHHHHHHHHHTC-CSEEEEECSSH
T ss_pred             CCCCEEEEECCCHHHHHHHHHHHhcCC-CcEEEEeeccc
Confidence            345699999999999999999999986 55899998653

>d2jfga1 c.5.1.1 (A:1-93) UDP-N-acetylmuramoyl-L-alanine:D-glutamate ligase MurD {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: MurCD N-terminal domain
superfamily: MurCD N-terminal domain
family: MurCD N-terminal domain
domain: UDP-N-acetylmuramoyl-L-alanine:D-glutamate ligase MurD
species: Escherichia coli [TaxId: 562]

Probab=94.82  E-value=0.02  Score=41.38  Aligned_cols=29  Identities=21%  Similarity=0.384  Sum_probs=27.5

Q ss_pred             cCCeEEEEcCChHHHHHHHHHHhCCCeEe
Q 012165          206 KAKKVVVVGGGYIGMEVAAAAVGWKLDTT  234 (469)
Q Consensus       206 ~~~~vvVvG~G~~g~e~A~~l~~~g~~v~  234 (469)
                      .+|+++|+|.|.+|+.+|..|.++|.+++
T Consensus         4 ~~K~v~ViGlG~sG~s~a~~L~~~g~~v~   32 (93)
T d2jfga1           4 QGKNVVIIGLGLTGLSCVDFFLARGVTPR   32 (93)
T ss_dssp             TTCCEEEECCSHHHHHHHHHHHHTTCCCE
T ss_pred             CCCEEEEEeECHHHHHHHHHHHHCCCEEE
Confidence            57899999999999999999999999987

>d1m6ia1 c.3.1.5 (A:128-263,A:401-477) Apoptosis-inducing factor (AIF) {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Apoptosis-inducing factor (AIF)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=94.73  E-value=0.0066  Score=51.71  Aligned_cols=25  Identities=16%  Similarity=0.283  Sum_probs=21.9

Q ss_pred             CeEEEEcCChHHHHHHHHHHhCCCe
Q 012165          208 KKVVVVGGGYIGMEVAAAAVGWKLD  232 (469)
Q Consensus       208 ~~vvVvG~G~~g~e~A~~l~~~g~~  232 (469)
                      .+++|||+|++|+++|..|++++.+
T Consensus         5 ~~~vIvG~G~aG~~~A~~Lr~~~~~   29 (213)
T d1m6ia1           5 VPFLLIGGGTAAFAAARSIRARDPG   29 (213)
T ss_dssp             EEEEEESCSHHHHHHHHHHHHHSTT
T ss_pred             CCEEEECCcHHHHHHHHHHHhcCCC
Confidence            4689999999999999999887654

>d1a9xa3 c.30.1.1 (A:1-127) Carbamoyl phosphate synthetase (CPS), large subunit PreATP-grasp domains {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: PreATP-grasp domain
superfamily: PreATP-grasp domain
family: BC N-terminal domain-like
domain: Carbamoyl phosphate synthetase (CPS), large subunit PreATP-grasp domains
species: Escherichia coli [TaxId: 562]

Probab=94.68  E-value=0.022  Score=43.42  Aligned_cols=40  Identities=20%  Similarity=0.370  Sum_probs=34.1

Q ss_pred             cCCCCCCcEEEEcCcH-----------HHHHHHHHHHHcCCCCCcEEEEcCCCC
Q 012165           46 SFANENREFVIVGGGN-----------AAGYAARTFVEHGMADGRLCIVSKEAY   88 (469)
Q Consensus        46 ~~~~~~~~vvIIGgG~-----------AGl~aA~~L~~~g~~~~~V~vie~~~~   88 (469)
                      |.....++|+|||+||           ++..|+.+|++.|+   ++.+|..++.
T Consensus         2 p~~~~~kkvlilGsGp~~IGq~~EfDy~~~~a~~alke~g~---~~iliN~NP~   52 (127)
T d1a9xa3           2 PKRTDIKSILILGAGPIVIGQACEFDYSGAQACKALREEGY---RVINVNSNPA   52 (127)
T ss_dssp             CCCSSCCEEEEECCCSCBTTBCTHHHHHHHHHHHHHHHHTC---EEEEECSCTT
T ss_pred             CCCCCCCEEEEECCCcCcccccchhHHHHHHHHHHHHHcCC---eEEEecCchH
Confidence            3445678999999996           79999999999998   7999998875

>d1lssa_ c.2.1.9 (A:) Ktn Mja218 {Archaeon Methanococcus jannaschii [TaxId: 2190]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Potassium channel NAD-binding domain
domain: Ktn Mja218
species: Archaeon Methanococcus jannaschii [TaxId: 2190]

Probab=94.63  E-value=0.013  Score=45.66  Aligned_cols=32  Identities=19%  Similarity=0.358  Sum_probs=29.6

Q ss_pred             cEEEEcCcHHHHHHHHHHHHcCCCCCcEEEEcCCC
Q 012165           53 EFVIVGGGNAAGYAARTFVEHGMADGRLCIVSKEA   87 (469)
Q Consensus        53 ~vvIIGgG~AGl~aA~~L~~~g~~~~~V~vie~~~   87 (469)
                      +|+|+|+|.-|...|..|.+.|+   +|++||+++
T Consensus         2 ~IvI~G~G~~G~~la~~L~~~g~---~v~vid~d~   33 (132)
T d1lssa_           2 YIIIAGIGRVGYTLAKSLSEKGH---DIVLIDIDK   33 (132)
T ss_dssp             EEEEECCSHHHHHHHHHHHHTTC---EEEEEESCH
T ss_pred             EEEEECCCHHHHHHHHHHHHCCC---CcceecCCh
Confidence            69999999999999999999987   799999865

>d1kdga1 c.3.1.2 (A:215-512,A:694-755) Flavoprotein domain of flavocytochrome cellobiose dehydrogenase (CDH), FAD-binding domain {Fungus (Phanerochaete chrysosporium) [TaxId: 5306]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD-linked reductases, N-terminal domain
domain: Flavoprotein domain of flavocytochrome cellobiose dehydrogenase (CDH), FAD-binding domain
species: Fungus (Phanerochaete chrysosporium) [TaxId: 5306]

Probab=94.18  E-value=0.035  Score=51.14  Aligned_cols=59  Identities=12%  Similarity=0.206  Sum_probs=39.7

Q ss_pred             eeHHHHHHcCcEEEcCCeEEEEEeCCCCcEEEEEcCCC-----C--EEeC-CEEEEccCCccCCchhh
Q 012165          235 RYEQLYQQNGVKFVKGASIKNLEAGSDGRVAAVKLEDG-----S--TIDA-DTIVIGIGAKPTVSPFE  294 (469)
Q Consensus       235 ~~~~~l~~~gV~~~~~~~v~~i~~~~~~~v~~v~~~~g-----~--~i~~-D~vi~a~G~~p~~~~~~  294 (469)
                      .+...+++.++++++++.|++|..+ ++++.+|++.+.     .  ++.+ ..||+|.|..-...+|.
T Consensus       196 yl~~a~~r~nl~i~t~~~V~rI~~d-~~ra~GV~~~~~~~~~~~~~~v~a~~eVILsAGai~SP~LLl  262 (360)
T d1kdga1         196 YLQTALARPNFTFKTNVMVSNVVRN-GSQILGVQTNDPTLGPNGFIPVTPKGRVILSAGAFGTSRILF  262 (360)
T ss_dssp             HHHHHHTCTTEEEECSCCEEEEEEE-TTEEEEEEESCTTSSGGGEEEEEEEEEEEECSHHHHHHHHHH
T ss_pred             hhhhhhcccccccccCcEEEEEEEe-CCEEEEEEEEecccCcceEEEEEECCEEEEechhHhChHHHH
Confidence            3445556678999999999999864 677888888642     2  2333 44899999643334443

>d2dw4a2 c.3.1.2 (A:274-654,A:764-831) Lysine-specific histone demethylase 1, LSD1 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD-linked reductases, N-terminal domain
domain: Lysine-specific histone demethylase 1, LSD1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=94.14  E-value=0.02  Score=51.79  Aligned_cols=29  Identities=31%  Similarity=0.582  Sum_probs=27.0

Q ss_pred             cCCeEEEEcCChHHHHHHHHHHhCCCeEe
Q 012165          206 KAKKVVVVGGGYIGMEVAAAAVGWKLDTT  234 (469)
Q Consensus       206 ~~~~vvVvG~G~~g~e~A~~l~~~g~~v~  234 (469)
                      +..+|+|||+|..|+-+|..|++.|.+|+
T Consensus         4 ~~~kViVIGaG~aGL~aA~~L~~~G~~V~   32 (449)
T d2dw4a2           4 KTGKVIIIGSGVSGLAAARQLQSFGMDVT   32 (449)
T ss_dssp             CCCEEEEECCBHHHHHHHHHHHHTTCEEE
T ss_pred             CCCcEEEECCCHHHHHHHHHHHhCCCCEE
Confidence            45789999999999999999999999997

>d3grsa3 d.87.1.1 (A:364-478) Glutathione reductase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: CO dehydrogenase flavoprotein C-domain-like
superfamily: FAD/NAD-linked reductases, dimerisation (C-terminal) domain
family: FAD/NAD-linked reductases, dimerisation (C-terminal) domain
domain: Glutathione reductase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=94.10  E-value=0.016  Score=43.79  Aligned_cols=55  Identities=9%  Similarity=0.012  Sum_probs=40.7

Q ss_pred             cEEEEEEe--CCEEEEEEeecCChHHhHHHH-HHHhCCCCCCh--hhhcCCCcHHHHHHH
Q 012165          404 KIATFWID--SGKLKGVLVESGSPEEFQLLP-TLARSQPFVDK--AKLQQASSVEEALEI  458 (469)
Q Consensus       404 ~~~~~~~~--~~~l~g~~~~~~~~~~~~~~~-~~~~~~~~~~~--~~~~~~~~~~~~~~~  458 (469)
                      .+.+++++  +++|+|++++++.+.++.... .+++.+.+++.  .....|||+.|+|..
T Consensus        54 g~~k~i~~~~~~~ilG~~ivG~~A~ElI~~~~~ai~~~~t~~~l~~~i~~hPT~sE~l~~  113 (115)
T d3grsa3          54 CVMKMVCANKEEKVVGIHMQGLGCDEMLQGFAVAVKMGATKADFDNTVAIHPTSSEELVT  113 (115)
T ss_dssp             EEEEEEEETTTTEEEEEEEESTTHHHHHHHHHHHHHTTCBHHHHHTSCCCSSCSGGGGGS
T ss_pred             eeEEEEEecCCceEEEEEEeccCHHHHHHHHHHHHHcCCCHHHHhhCccCCCCHHHHHHh
Confidence            36677664  699999999888887766654 45688887763  234789999998863

>d1onfa3 d.87.1.1 (A:377-495) Glutathione reductase {Plasmodium falciparum [TaxId: 5833]}

class: Alpha and beta proteins (a+b)
fold: CO dehydrogenase flavoprotein C-domain-like
superfamily: FAD/NAD-linked reductases, dimerisation (C-terminal) domain
family: FAD/NAD-linked reductases, dimerisation (C-terminal) domain
domain: Glutathione reductase
species: Plasmodium falciparum [TaxId: 5833]

Probab=94.05  E-value=0.027  Score=42.86  Aligned_cols=54  Identities=7%  Similarity=0.014  Sum_probs=39.7

Q ss_pred             EEEEEE--eCCEEEEEEeecCChHHhHHHH-HHHhCCCCCCh--hhhcCCCcHHHHHHH
Q 012165          405 IATFWI--DSGKLKGVLVESGSPEEFQLLP-TLARSQPFVDK--AKLQQASSVEEALEI  458 (469)
Q Consensus       405 ~~~~~~--~~~~l~g~~~~~~~~~~~~~~~-~~~~~~~~~~~--~~~~~~~~~~~~~~~  458 (469)
                      +.++.+  ++++|+|+++++++++++...- .+++.+.+++.  .....|||+.|++..
T Consensus        59 ~~kli~~~~~~~IlGa~ivG~~A~ElI~~~~~ai~~~~t~~~l~~~i~~hPT~sE~~~~  117 (119)
T d1onfa3          59 YLKLVCVGKDELIKGLHIIGLNADEIVQGFAVALKMNATKKDFDETIPIHPTAAEEFLT  117 (119)
T ss_dssp             EEEEEEETTTTEEEEEEEESTTHHHHHHHHHHHHHTTCBHHHHHTSCCCTTCSTTHHHH
T ss_pred             eEEEEEecCCCcEEEEEEeCCCHHHHHHHHHHHHHcCCcHHHHhhCcccCCCHHHHHHh
Confidence            455555  3599999999888887766654 45788887763  234789999999874

>d1ldna1 c.2.1.5 (A:15-162) Lactate dehydrogenase {Bacillus stearothermophilus [TaxId: 1422]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: LDH N-terminal domain-like
domain: Lactate dehydrogenase
species: Bacillus stearothermophilus [TaxId: 1422]

Probab=93.93  E-value=0.038  Score=43.74  Aligned_cols=38  Identities=13%  Similarity=0.376  Sum_probs=32.4

Q ss_pred             CCCCcEEEEcCcHHHHHHHHHHHHcCCCCCcEEEEcCCC
Q 012165           49 NENREFVIVGGGNAAGYAARTFVEHGMADGRLCIVSKEA   87 (469)
Q Consensus        49 ~~~~~vvIIGgG~AGl~aA~~L~~~g~~~~~V~vie~~~   87 (469)
                      ....+|.|||+|.-|.++|..|...+. -.++.|+|..+
T Consensus         4 ~~~~KI~IiGaG~vG~~~a~~l~~~~l-~~el~L~Di~~   41 (148)
T d1ldna1           4 NGGARVVVIGAGFVGASYVFALMNQGI-ADEIVLIDANE   41 (148)
T ss_dssp             TTSCEEEEECCSHHHHHHHHHHHHHTC-CSEEEEECSSH
T ss_pred             CCCCeEEEECcCHHHHHHHHHHHhcCC-CceEEEEeecc
Confidence            445789999999999999999999987 56899998543

>d1bg6a2 c.2.1.6 (A:4-187) N-(1-D-carboxylethyl)-L-norvaline dehydrogenase {Arthrobacter, strain 1c [TaxId: 1663]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: 6-phosphogluconate dehydrogenase-like, N-terminal domain
domain: N-(1-D-carboxylethyl)-L-norvaline dehydrogenase
species: Arthrobacter, strain 1c [TaxId: 1663]

Probab=93.89  E-value=0.029  Score=45.94  Aligned_cols=75  Identities=23%  Similarity=0.143  Sum_probs=45.5

Q ss_pred             CeEEEEcCChHHHHHHHHHHhCCCeEee------eHHHHHHcCcEEEcCCeEEEEEeCCCCcEEEEEcCCCC--EEeCCE
Q 012165          208 KKVVVVGGGYIGMEVAAAAVGWKLDTTR------YEQLYQQNGVKFVKGASIKNLEAGSDGRVAAVKLEDGS--TIDADT  279 (469)
Q Consensus       208 ~~vvVvG~G~~g~e~A~~l~~~g~~v~~------~~~~l~~~gV~~~~~~~v~~i~~~~~~~v~~v~~~~g~--~i~~D~  279 (469)
                      |++.|||+|..|.-+|..|++.|.+|..      ..+.+++.|...............      ...+.+-.  .-++|+
T Consensus         2 k~iaIiGaG~~G~~~A~~l~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~------~~~~~~~~e~~~~aD~   75 (184)
T d1bg6a2           2 KTYAVLGLGNGGHAFAAYLALKGQSVLAWDIDAQRIKEIQDRGAIIAEGPGLAGTAHP------DLLTSDIGLAVKDADV   75 (184)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHTTCEEEEECSCHHHHHHHHHHTSEEEESSSCCEEECC------SEEESCHHHHHTTCSE
T ss_pred             CEEEEECccHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHcCCCchhhhhhhhhhhh------hhhhhhhHhHhcCCCE
Confidence            7899999999999999999999999981      123344444433332222222110      01122221  135899


Q ss_pred             EEEccCCcc
Q 012165          280 IVIGIGAKP  288 (469)
Q Consensus       280 vi~a~G~~p  288 (469)
                      +|+++....
T Consensus        76 iii~v~~~~   84 (184)
T d1bg6a2          76 ILIVVPAIH   84 (184)
T ss_dssp             EEECSCGGG
T ss_pred             EEEEEchhH
Confidence            999975443

>d1pjqa1 c.2.1.11 (A:1-113) Siroheme synthase CysG, domain 1 {Salmonella typhimurium [TaxId: 90371]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Siroheme synthase N-terminal domain-like
domain: Siroheme synthase CysG, domain 1
species: Salmonella typhimurium [TaxId: 90371]

Probab=93.86  E-value=0.038  Score=41.44  Aligned_cols=66  Identities=12%  Similarity=0.198  Sum_probs=45.9

Q ss_pred             cCCeEEEEcCChHHHHHHHHHHhCCCeEe--------eeHHHHHHcCcEEEcCCeEEEEEeCCCCcEEEEEcCCCCEEeC
Q 012165          206 KAKKVVVVGGGYIGMEVAAAAVGWKLDTT--------RYEQLYQQNGVKFVKGASIKNLEAGSDGRVAAVKLEDGSTIDA  277 (469)
Q Consensus       206 ~~~~vvVvG~G~~g~e~A~~l~~~g~~v~--------~~~~~l~~~gV~~~~~~~v~~i~~~~~~~v~~v~~~~g~~i~~  277 (469)
                      .+++++|||+|.+|..-|..|.+.|.+++        .+....++.+++++...                 +++.....+
T Consensus        11 ~~k~vlVvG~G~va~~ka~~ll~~ga~v~v~~~~~~~~~~~~~~~~~i~~~~~~-----------------~~~~dl~~~   73 (113)
T d1pjqa1          11 RDRDCLIVGGGDVAERKARLLLEAGARLTVNALTFIPQFTVWANEGMLTLVEGP-----------------FDETLLDSC   73 (113)
T ss_dssp             BTCEEEEECCSHHHHHHHHHHHHTTBEEEEEESSCCHHHHHHHTTTSCEEEESS-----------------CCGGGGTTC
T ss_pred             CCCEEEEECCCHHHHHHHHHHHHCCCeEEEEeccCChHHHHHHhcCCceeeccC-----------------CCHHHhCCC
Confidence            58999999999999999999999999988        33344444455544221                 111122357


Q ss_pred             CEEEEccCCcc
Q 012165          278 DTIVIGIGAKP  288 (469)
Q Consensus       278 D~vi~a~G~~p  288 (469)
                      ++|+.+++-..
T Consensus        74 ~lv~~at~d~~   84 (113)
T d1pjqa1          74 WLAIAATDDDT   84 (113)
T ss_dssp             SEEEECCSCHH
T ss_pred             cEEeecCCCHH
Confidence            88999987654

>d1f0ya2 c.2.1.6 (A:12-203) Short chain L-3-hydroxyacyl CoA dehydrogenase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: 6-phosphogluconate dehydrogenase-like, N-terminal domain
domain: Short chain L-3-hydroxyacyl CoA dehydrogenase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=93.84  E-value=0.03  Score=46.60  Aligned_cols=36  Identities=17%  Similarity=0.283  Sum_probs=32.3

Q ss_pred             CCCCcEEEEcCcHHHHHHHHHHHHcCCCCCcEEEEcCCC
Q 012165           49 NENREFVIVGGGNAAGYAARTFVEHGMADGRLCIVSKEA   87 (469)
Q Consensus        49 ~~~~~vvIIGgG~AGl~aA~~L~~~g~~~~~V~vie~~~   87 (469)
                      ++-++|.|||+|.-|...|..+++.|+   +|+++|.++
T Consensus         2 ~~IkkvaViGaG~mG~~iA~~~a~~G~---~V~l~D~~~   37 (192)
T d1f0ya2           2 IIVKHVTVIGGGLMGAGIAQVAAATGH---TVVLVDQTE   37 (192)
T ss_dssp             CCCCEEEEECCSHHHHHHHHHHHHTTC---EEEEECSCH
T ss_pred             ceeEEEEEECcCHHHHHHHHHHHhCCC---cEEEEECCh
Confidence            445799999999999999999999998   799999775

>d2iida1 c.3.1.2 (A:4-319,A:433-486) L-aminoacid oxidase {Malayan pit viper (Calloselasma rhodostoma) [TaxId: 8717]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD-linked reductases, N-terminal domain
domain: L-aminoacid oxidase
species: Malayan pit viper (Calloselasma rhodostoma) [TaxId: 8717]

Probab=93.80  E-value=0.019  Score=51.83  Aligned_cols=33  Identities=33%  Similarity=0.456  Sum_probs=29.3

Q ss_pred             hcCCeEEEEcCChHHHHHHHHHHhCCCeEeeeH
Q 012165          205 EKAKKVVVVGGGYIGMEVAAAAVGWKLDTTRYE  237 (469)
Q Consensus       205 ~~~~~vvVvG~G~~g~e~A~~l~~~g~~v~~~~  237 (469)
                      ..+|+|+|||+|++|+.+|..|++.|.+|+.++
T Consensus        28 ~~pkkV~IIGaG~aGLsaA~~L~~~G~~V~vlE   60 (370)
T d2iida1          28 SNPKHVVIVGAGMAGLSAAYVLAGAGHQVTVLE   60 (370)
T ss_dssp             SSCCEEEEECCBHHHHHHHHHHHHHTCEEEEEC
T ss_pred             CCCCeEEEECCCHHHHHHHHHHHHCCCCEEEEe
Confidence            457899999999999999999999999997444

>d1a9xa4 c.30.1.1 (A:556-676) Carbamoyl phosphate synthetase (CPS), large subunit PreATP-grasp domains {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: PreATP-grasp domain
superfamily: PreATP-grasp domain
family: BC N-terminal domain-like
domain: Carbamoyl phosphate synthetase (CPS), large subunit PreATP-grasp domains
species: Escherichia coli [TaxId: 562]

Probab=93.70  E-value=0.094  Score=39.30  Aligned_cols=38  Identities=18%  Similarity=0.356  Sum_probs=32.8

Q ss_pred             CCCCcEEEEcCcH-----------HHHHHHHHHHHcCCCCCcEEEEcCCCCC
Q 012165           49 NENREFVIVGGGN-----------AAGYAARTFVEHGMADGRLCIVSKEAYA   89 (469)
Q Consensus        49 ~~~~~vvIIGgG~-----------AGl~aA~~L~~~g~~~~~V~vie~~~~~   89 (469)
                      +..++|+|||+||           ++..|+.+|++.|+   ++.+|..+|..
T Consensus         2 t~~kkvlViGsGp~rIGq~~EfDy~~~~a~~aLk~~g~---~~IliN~NPeT   50 (121)
T d1a9xa4           2 TDREKIMVLGGGPNRIGQGIEFDYCCVHASLALREDGY---ETIMVNCNPET   50 (121)
T ss_dssp             SSSCEEEEECCCSCBTTBCHHHHHHHHHHHHHHHHTTC---EEEEECCCTTS
T ss_pred             CCCCEEEEECCCcCcccccchhhHHHHHHHHHHHhcCC---eEEEEecChhh
Confidence            3467999999995           79999999999998   79999988764

>d1ks9a2 c.2.1.6 (A:1-167) Ketopantoate reductase PanE {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: 6-phosphogluconate dehydrogenase-like, N-terminal domain
domain: Ketopantoate reductase PanE
species: Escherichia coli [TaxId: 562]

Probab=93.48  E-value=0.04  Score=44.29  Aligned_cols=33  Identities=9%  Similarity=0.119  Sum_probs=30.0

Q ss_pred             cEEEEcCcHHHHHHHHHHHHcCCCCCcEEEEcCCCC
Q 012165           53 EFVIVGGGNAAGYAARTFVEHGMADGRLCIVSKEAY   88 (469)
Q Consensus        53 ~vvIIGgG~AGl~aA~~L~~~g~~~~~V~vie~~~~   88 (469)
                      +|+|||+|.-|...|..|.+.|+   +|+++++.+.
T Consensus         2 kI~IiGaG~iG~~~a~~L~~~G~---~V~~~~r~~~   34 (167)
T d1ks9a2           2 KITVLGCGALGQLWLTALCKQGH---EVQGWLRVPQ   34 (167)
T ss_dssp             EEEEECCSHHHHHHHHHHHHTTC---EEEEECSSCC
T ss_pred             EEEEECcCHHHHHHHHHHHHCCC---ceEEEEcCHH
Confidence            69999999999999999999998   8999987654

>d1gesa3 d.87.1.1 (A:336-450) Glutathione reductase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a+b)
fold: CO dehydrogenase flavoprotein C-domain-like
superfamily: FAD/NAD-linked reductases, dimerisation (C-terminal) domain
family: FAD/NAD-linked reductases, dimerisation (C-terminal) domain
domain: Glutathione reductase
species: Escherichia coli [TaxId: 562]

Probab=93.33  E-value=0.03  Score=42.26  Aligned_cols=53  Identities=8%  Similarity=-0.073  Sum_probs=39.3

Q ss_pred             EEEEEEe--CCEEEEEEeecCChHHhHHHHH-HHhCCCCCCh--hhhcCCCcHHHHHH
Q 012165          405 IATFWID--SGKLKGVLVESGSPEEFQLLPT-LARSQPFVDK--AKLQQASSVEEALE  457 (469)
Q Consensus       405 ~~~~~~~--~~~l~g~~~~~~~~~~~~~~~~-~~~~~~~~~~--~~~~~~~~~~~~~~  457 (469)
                      +.++.++  +++|+|++++++++.++..... +++.+.+++.  .....|||+.|+|.
T Consensus        55 ~~k~v~~~~~~~IlGa~ivG~~A~ElI~~~~~ai~~~~t~~~l~~~i~~hPT~sE~l~  112 (115)
T d1gesa3          55 RMKLVCVGSEEKIVGIHGIGFGMDEMLQGFAVALKMGATKKDFDNTVAIHPTAAEEFV  112 (115)
T ss_dssp             EEEEEEETTTTEEEEEEEESTTHHHHHHHHHHHHHTTCBHHHHHTSCCCSSCSGGGGG
T ss_pred             eEEEEEecCCcEEEEEEEECCCHHHHHHHHHHHHHcCCcHHHHhcCcccCCcHHHHHH
Confidence            6666664  5899999998888877666554 5688877663  23477899999875

>d2gqfa1 c.3.1.8 (A:1-194,A:343-401) Hypothetical protein HI0933 {Haemophilus influenzae [TaxId: 727]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: HI0933 N-terminal domain-like
domain: Hypothetical protein HI0933
species: Haemophilus influenzae [TaxId: 727]

Probab=93.31  E-value=0.063  Score=46.47  Aligned_cols=123  Identities=16%  Similarity=0.177  Sum_probs=73.7

Q ss_pred             CCCCcEEEEcCcHHHHHHHHHHHHcCCCCCcEEEEcCCCCCCC-------CCCCCcc------cccCCCCCCCCC-C---
Q 012165           49 NENREFVIVGGGNAAGYAARTFVEHGMADGRLCIVSKEAYAPY-------ERPALTK------GYLFPLDKKPAR-L---  111 (469)
Q Consensus        49 ~~~~~vvIIGgG~AGl~aA~~L~~~g~~~~~V~vie~~~~~~~-------~~~~l~~------~~~~~~~~~~~~-~---  111 (469)
                      .+.+||+|||||+||++||..|+++|.   +|+|+|+.+.+.-       .+..+..      .+.......... +   
T Consensus         2 ~~~~DViIIGaG~aGl~aA~~la~~G~---~V~vlEk~~~~G~k~~~sGgG~~n~~n~~~~~~~~~~~~~~~~~~~l~~~   78 (253)
T d2gqfa1           2 SQYSENIIIGAGAAGLFCAAQLAKLGK---SVTVFDNGKKIGRKILMSGGGFCNFTNLEVTPAHYLSQNPHFVKSALARY   78 (253)
T ss_dssp             EEECSEEEECCSHHHHHHHHHHHHTTC---CEEEECSSSSSCHHHHHGGGGTCCCEESSCCGGGEECSCTTSTHHHHHHS
T ss_pred             CCCCcEEEECcCHHHHHHHHHHHHCCC---cEEEEecCCCCCCceEecCCccccccCcccCchhhhccChHHHHHHhhhh
Confidence            345899999999999999999999987   7999999875420       0111100      000000000000 0   


Q ss_pred             -----------CCCcccc-------CCC----CCCCCHhHHHHCCcEEEeCCcEEEEeCCCc-----EEEeCCCeEEEec
Q 012165          112 -----------PGFHTCV-------GSG----GERQTPEWYKEKGIEMIYQDPVTSIDIEKQ-----TLITNSGKLLKYG  164 (469)
Q Consensus       112 -----------~~~~~~~-------~~~----~~~~~~~~~~~~~i~~~~~~~v~~id~~~~-----~v~~~~g~~~~yd  164 (469)
                                 .+.....       ...    ....+.+.+++.+++++++++|+.+.....     .+...++.++++|
T Consensus        79 ~~~~~~~~~~~~g~~~~~~~~~~~~~~~~a~~i~~~L~~~~~~~gV~i~~~~~V~~i~~~~~~~~v~~~~~~~~~~~~a~  158 (253)
T d2gqfa1          79 TNWDFISLVAEQGITYHEKELGQLFCDEGAEQIVEMLKSECDKYGAKILLRSEVSQVERIQNDEKVRFVLQVNSTQWQCK  158 (253)
T ss_dssp             CHHHHHHHHHHTTCCEEECSTTEEEETTCTHHHHHHHHHHHHHHTCEEECSCCEEEEEECCSCSSCCEEEEETTEEEEES
T ss_pred             cccchhhhhhhcCcceeeecCCccccccchhHHHHHHHHHHHHcCCCeecCceEEEEEeecCCceeEEEEecCCEEEEeC
Confidence                       0000000       000    000112335677999999999999875432     3455577889999


Q ss_pred             cEEeccCCCC
Q 012165          165 SLIVATGCTA  174 (469)
Q Consensus       165 ~lVlAtG~~~  174 (469)
                      +||+|||+..
T Consensus       159 ~VIiAtGG~S  168 (253)
T d2gqfa1         159 NLIVATGGLS  168 (253)
T ss_dssp             EEEECCCCSS
T ss_pred             EEEEcCCccc
Confidence            9999999864

>d1j6ua1 c.5.1.1 (A:0-88) UDP-N-acetylmuramate-alanine ligase MurC {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: MurCD N-terminal domain
superfamily: MurCD N-terminal domain
family: MurCD N-terminal domain
domain: UDP-N-acetylmuramate-alanine ligase MurC
species: Thermotoga maritima [TaxId: 2336]

Probab=93.20  E-value=0.047  Score=38.92  Aligned_cols=68  Identities=22%  Similarity=0.218  Sum_probs=49.8

Q ss_pred             CeEEEEcCChHHH-HHHHHHHhCCCeEe-------eeHHHHHHcCcEEEcCCeEEEEEeCCCCcEEEEEcCCCCEEeCCE
Q 012165          208 KKVVVVGGGYIGM-EVAAAAVGWKLDTT-------RYEQLYQQNGVKFVKGASIKNLEAGSDGRVAAVKLEDGSTIDADT  279 (469)
Q Consensus       208 ~~vvVvG~G~~g~-e~A~~l~~~g~~v~-------~~~~~l~~~gV~~~~~~~v~~i~~~~~~~v~~v~~~~g~~i~~D~  279 (469)
                      .++-+||-|-+|+ -+|..|.++|.+|+       ...+.|++.|+++..+...+.+                  -.+|+
T Consensus         2 ~~ihfiGIgG~GMs~LA~~L~~~G~~VsGSD~~~~~~t~~L~~~Gi~i~~gh~~~~i------------------~~~d~   63 (89)
T d1j6ua1           2 MKIHFVGIGGIGMSAVALHEFSNGNDVYGSNIEETERTAYLRKLGIPIFVPHSADNW------------------YDPDL   63 (89)
T ss_dssp             CEEEEETTTSHHHHHHHHHHHHTTCEEEEECSSCCHHHHHHHHTTCCEESSCCTTSC------------------CCCSE
T ss_pred             cEEEEEeECHHHHHHHHHHHHhCCCeEEEEeCCCChhHHHHHHCCCeEEeeeccccc------------------CCCCE
Confidence            3677888666666 46899999999998       5566799999999876421111                  24789


Q ss_pred             EEEccCCccCCchh
Q 012165          280 IVIGIGAKPTVSPF  293 (469)
Q Consensus       280 vi~a~G~~p~~~~~  293 (469)
                      ||++.+...+.+.+
T Consensus        64 vV~SsAI~~~npel   77 (89)
T d1j6ua1          64 VIKTPAVRDDNPEI   77 (89)
T ss_dssp             EEECTTCCTTCHHH
T ss_pred             EEEecCcCCCCHHH
Confidence            99999988765543

>d2pv7a2 c.2.1.6 (A:92-243) Prephenate dehydrogenase TyrA {Haemophilus influenzae [TaxId: 727]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: 6-phosphogluconate dehydrogenase-like, N-terminal domain
domain: Prephenate dehydrogenase TyrA
species: Haemophilus influenzae [TaxId: 727]

Probab=93.17  E-value=0.061  Score=42.59  Aligned_cols=38  Identities=29%  Similarity=0.478  Sum_probs=33.0

Q ss_pred             CCCCCCcEEEEc-CcHHHHHHHHHHHHcCCCCCcEEEEcCCC
Q 012165           47 FANENREFVIVG-GGNAAGYAARTFVEHGMADGRLCIVSKEA   87 (469)
Q Consensus        47 ~~~~~~~vvIIG-gG~AGl~aA~~L~~~g~~~~~V~vie~~~   87 (469)
                      +...+++|.||| .|.-|.+.|..|++.|+   +|+++|...
T Consensus         5 ~~~~~~kI~iIGg~G~mG~~la~~L~~~G~---~V~~~d~~~   43 (152)
T d2pv7a2           5 INSDIHKIVIVGGYGKLGGLFARYLRASGY---PISILDRED   43 (152)
T ss_dssp             SCTTCCCEEEETTTSHHHHHHHHHHHTTTC---CEEEECTTC
T ss_pred             cCCCCCeEEEEcCCCHHHHHHHHHHHHcCC---CcEeccccc
Confidence            445678999999 69999999999999998   799998764

>d1fcda2 c.3.1.5 (A:115-255) Flavocytochrome c sulfide dehydrogenase, FCSD, flavin-binding subunit {Purple phototrophic bacterium (Chromatium vinosum) [TaxId: 1049]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Flavocytochrome c sulfide dehydrogenase, FCSD, flavin-binding subunit
species: Purple phototrophic bacterium (Chromatium vinosum) [TaxId: 1049]

Probab=93.16  E-value=0.081  Score=41.36  Aligned_cols=41  Identities=15%  Similarity=0.194  Sum_probs=30.3

Q ss_pred             HHHHcCcEEEcCCe--EEEEEeCCCCcEEEEEcCCCCEEeCCEEEEc
Q 012165          239 LYQQNGVKFVKGAS--IKNLEAGSDGRVAAVKLEDGSTIDADTIVIG  283 (469)
Q Consensus       239 ~l~~~gV~~~~~~~--v~~i~~~~~~~v~~v~~~~g~~i~~D~vi~a  283 (469)
                      .+++.||+++.+..  +.+++.  ..+  .+++.+|+++++|++++.
T Consensus        97 ~~~~~~I~~~~~~~~~~v~vd~--~~~--~~~~~~Ge~v~yD~l~vv  139 (141)
T d1fcda2          97 GTENAMIEWHPGPDSAVVKVDG--GEM--MVETAFGDEFKADVINLI  139 (141)
T ss_dssp             TTSSCSEEEECSSTTCEEEEEE--TTT--EEEETTCCEEECSEEEEC
T ss_pred             HHHhcCceeeecCCceEEeecC--CcE--EEEeCCCcEEeeeEEEeC
Confidence            34578999998764  556653  333  367899999999999875

>d1i0za1 c.2.1.5 (A:1-160) Lactate dehydrogenase {Human (Homo sapiens), heart isoform (H chain) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: LDH N-terminal domain-like
domain: Lactate dehydrogenase
species: Human (Homo sapiens), heart isoform (H chain) [TaxId: 9606]

Probab=93.10  E-value=0.077  Score=42.40  Aligned_cols=38  Identities=18%  Similarity=0.273  Sum_probs=33.0

Q ss_pred             CCCCCcEEEEcCcHHHHHHHHHHHHcCCCCCcEEEEcCC
Q 012165           48 ANENREFVIVGGGNAAGYAARTFVEHGMADGRLCIVSKE   86 (469)
Q Consensus        48 ~~~~~~vvIIGgG~AGl~aA~~L~~~g~~~~~V~vie~~   86 (469)
                      ...+++|.|||+|.-|.++|..|...+. -.++.|+|..
T Consensus        17 ~~~~~KV~IIGaG~VG~~~A~~l~~~~l-~~ElvLiD~~   54 (160)
T d1i0za1          17 TVPNNKITVVGVGQVGMACAISILGKSL-ADELALVDVL   54 (160)
T ss_dssp             CCCSSEEEEECCSHHHHHHHHHHHHTTC-CSEEEEECSC
T ss_pred             cCCCCeEEEECCCHHHHHHHHHHHhcCC-CcEEEEEEec
Confidence            3446799999999999999999999987 5689999865

>d1hyha1 c.2.1.5 (A:21-166) L-2-hydroxyisocapronate dehydrogenase, L-HICDH {Lactobacillus confusus [TaxId: 1583]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: LDH N-terminal domain-like
domain: L-2-hydroxyisocapronate dehydrogenase, L-HICDH
species: Lactobacillus confusus [TaxId: 1583]

Probab=93.05  E-value=0.051  Score=42.83  Aligned_cols=34  Identities=21%  Similarity=0.426  Sum_probs=30.0

Q ss_pred             CcEEEEcCcHHHHHHHHHHHHcCCCCCcEEEEcCC
Q 012165           52 REFVIVGGGNAAGYAARTFVEHGMADGRLCIVSKE   86 (469)
Q Consensus        52 ~~vvIIGgG~AGl~aA~~L~~~g~~~~~V~vie~~   86 (469)
                      ++|.|||+|.-|.++|..|..++. -.++.|+|..
T Consensus         2 kKI~IIGaG~VG~~~a~~l~~~~~-~~elvL~Di~   35 (146)
T d1hyha1           2 RKIGIIGLGNVGAAVAHGLIAQGV-ADDYVFIDAN   35 (146)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHHTC-CSEEEEECSS
T ss_pred             CeEEEECcCHHHHHHHHHHHhcCC-CceEEEEecc
Confidence            689999999999999999999886 5689998854

>d2ldxa1 c.2.1.5 (A:1-159) Lactate dehydrogenase {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: LDH N-terminal domain-like
domain: Lactate dehydrogenase
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=92.76  E-value=0.081  Score=42.25  Aligned_cols=37  Identities=19%  Similarity=0.332  Sum_probs=31.9

Q ss_pred             CCCCcEEEEcCcHHHHHHHHHHHHcCCCCCcEEEEcCC
Q 012165           49 NENREFVIVGGGNAAGYAARTFVEHGMADGRLCIVSKE   86 (469)
Q Consensus        49 ~~~~~vvIIGgG~AGl~aA~~L~~~g~~~~~V~vie~~   86 (469)
                      +++.+|.|||+|.-|.++|+.|...+. -.++.|+|..
T Consensus        17 ~~~~KI~IIGaG~VG~~~A~~l~~~~l-~~elvL~D~~   53 (159)
T d2ldxa1          17 LSRCKITVVGVGDVGMACAISILLKGL-ADELALVDAD   53 (159)
T ss_dssp             CCCCEEEEECCSHHHHHHHHHHHTTTS-CSEEEEECSC
T ss_pred             CCCCeEEEECCCHHHHHHHHHHHhcCC-CCEEEEEeCC
Confidence            445689999999999999999999987 5689999855

>d1kjqa2 c.30.1.1 (A:2-112) Glycinamide ribonucleotide transformylase PurT, N-domain {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: PreATP-grasp domain
superfamily: PreATP-grasp domain
family: BC N-terminal domain-like
domain: Glycinamide ribonucleotide transformylase PurT, N-domain
species: Escherichia coli [TaxId: 562]

Probab=92.72  E-value=0.095  Score=39.03  Aligned_cols=42  Identities=19%  Similarity=0.287  Sum_probs=35.4

Q ss_pred             cCCCCCCcEEEEcCcHHHHHHHHHHHHcCCCCCcEEEEcCCCCCC
Q 012165           46 SFANENREFVIVGGGNAAGYAARTFVEHGMADGRLCIVSKEAYAP   90 (469)
Q Consensus        46 ~~~~~~~~vvIIGgG~AGl~aA~~L~~~g~~~~~V~vie~~~~~~   90 (469)
                      |......+|.|+|||.=|...|...++.|+   ++.++|+++..|
T Consensus         6 ~~~~~~~kigIlGgGQL~rMla~aA~~lG~---~v~v~d~~~~~P   47 (111)
T d1kjqa2           6 ALRPAATRVMLLGSGELGKEVAIECQRLGV---EVIAVDRYADAP   47 (111)
T ss_dssp             TTSTTCCEEEEESCSHHHHHHHHHHHTTTC---EEEEEESSTTCG
T ss_pred             CCCCCCCEEEEEeCCHHHHHHHHHHHHCCC---EEEEEcCCCCCc
Confidence            334555789999999999999999999998   799999887643

>d1fcda2 c.3.1.5 (A:115-255) Flavocytochrome c sulfide dehydrogenase, FCSD, flavin-binding subunit {Purple phototrophic bacterium (Chromatium vinosum) [TaxId: 1049]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Flavocytochrome c sulfide dehydrogenase, FCSD, flavin-binding subunit
species: Purple phototrophic bacterium (Chromatium vinosum) [TaxId: 1049]

Probab=92.58  E-value=0.04  Score=43.23  Aligned_cols=82  Identities=18%  Similarity=0.093  Sum_probs=52.7

Q ss_pred             HHHHHHHHHHcCCCCCcEEEEcCCCCCCCCCCCCcccccCCCCCCCCCCCCCccccCCCCCCCCHhHHHHCCcEEEeCC-
Q 012165           63 AGYAARTFVEHGMADGRLCIVSKEAYAPYERPALTKGYLFPLDKKPARLPGFHTCVGSGGERQTPEWYKEKGIEMIYQD-  141 (469)
Q Consensus        63 Gl~aA~~L~~~g~~~~~V~vie~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~-  141 (469)
                      .+.++.+|+++|. ..++.|+...+...-. +..... +                     .....+.+++.+|+++.+. 
T Consensus        55 a~l~~~~lr~~g~-r~kv~i~~~~~~~~~~-~~~~~~-~---------------------~~~~~~~~~~~~I~~~~~~~  110 (141)
T d1fcda2          55 ASQVAYYLKAHKP-MSKVIILDSSQTFSKQ-SQFSKG-W---------------------ERLYGFGTENAMIEWHPGPD  110 (141)
T ss_dssp             HHHHHHHHGGGCS-CCCEEEECSCSSCTTH-HHHHHH-H---------------------HHHHCSTTSSCSEEEECSST
T ss_pred             HHHHHHHHHHcCC-CCcEEEEecCCCCccC-CcccHH-H---------------------HHHHHHHHHhcCceeeecCC
Confidence            3556677888887 6788888655432000 000000 0                     0011122356789988754 


Q ss_pred             -cEEEEeCCCcEEEeCCCeEEEeccEEe
Q 012165          142 -PVTSIDIEKQTLITNSGKLLKYGSLIV  168 (469)
Q Consensus       142 -~v~~id~~~~~v~~~~g~~~~yd~lVl  168 (469)
                       .+..+|...+++.+.+|+++.||.|.+
T Consensus       111 ~~~v~vd~~~~~~~~~~Ge~v~yD~l~v  138 (141)
T d1fcda2         111 SAVVKVDGGEMMVETAFGDEFKADVINL  138 (141)
T ss_dssp             TCEEEEEETTTEEEETTCCEEECSEEEE
T ss_pred             ceEEeecCCcEEEEeCCCcEEeeeEEEe
Confidence             588999999999999999999999876

>d1kyqa1 c.2.1.11 (A:1-150) Bifunctional dehydrogenase/ferrochelatase Met8p, N-terminal domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Siroheme synthase N-terminal domain-like
domain: Bifunctional dehydrogenase/ferrochelatase Met8p, N-terminal domain
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=92.45  E-value=0.043  Score=43.49  Aligned_cols=29  Identities=24%  Similarity=0.423  Sum_probs=27.9

Q ss_pred             cCCeEEEEcCChHHHHHHHHHHhCCCeEe
Q 012165          206 KAKKVVVVGGGYIGMEVAAAAVGWKLDTT  234 (469)
Q Consensus       206 ~~~~vvVvG~G~~g~e~A~~l~~~g~~v~  234 (469)
                      .+|+++|||||.+|.+-+..|.+.|.+++
T Consensus        12 ~gkrvLViGgG~va~~ka~~Ll~~GA~Vt   40 (150)
T d1kyqa1          12 KDKRILLIGGGEVGLTRLYKLMPTGCKLT   40 (150)
T ss_dssp             TTCEEEEEEESHHHHHHHHHHGGGTCEEE
T ss_pred             CCCEEEEECCCHHHHHHHHHHHHCCCEEE
Confidence            68999999999999999999999999998

>d1y6ja1 c.2.1.5 (A:7-148) Lactate dehydrogenase {Clostridium thermocellum [TaxId: 1515]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: LDH N-terminal domain-like
domain: Lactate dehydrogenase
species: Clostridium thermocellum [TaxId: 1515]

Probab=92.44  E-value=0.085  Score=41.29  Aligned_cols=35  Identities=20%  Similarity=0.240  Sum_probs=30.4

Q ss_pred             CcEEEEcCcHHHHHHHHHHHHcCCCCCcEEEEcCCC
Q 012165           52 REFVIVGGGNAAGYAARTFVEHGMADGRLCIVSKEA   87 (469)
Q Consensus        52 ~~vvIIGgG~AGl~aA~~L~~~g~~~~~V~vie~~~   87 (469)
                      .+|.|||+|.-|.++|..|...+. -.++.|+|...
T Consensus         2 ~KI~IIGaG~VG~~~a~~l~~~~l-~~el~L~D~~~   36 (142)
T d1y6ja1           2 SKVAIIGAGFVGASAAFTMALRQT-ANELVLIDVFK   36 (142)
T ss_dssp             CCEEEECCSHHHHHHHHHHHHTTC-SSEEEEECCC-
T ss_pred             CeEEEECCCHHHHHHHHHHHhcCC-CCEEEEEeccC
Confidence            589999999999999999999987 56899999654

>d1wdka3 c.2.1.6 (A:311-496) Fatty oxidation complex alpha subunit, middle domain {Pseudomonas fragi [TaxId: 296]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: 6-phosphogluconate dehydrogenase-like, N-terminal domain
domain: Fatty oxidation complex alpha subunit, middle domain
species: Pseudomonas fragi [TaxId: 296]

Probab=92.40  E-value=0.063  Score=44.23  Aligned_cols=35  Identities=14%  Similarity=0.243  Sum_probs=31.3

Q ss_pred             CCCcEEEEcCcHHHHHHHHHHHHcCCCCCcEEEEcCCC
Q 012165           50 ENREFVIVGGGNAAGYAARTFVEHGMADGRLCIVSKEA   87 (469)
Q Consensus        50 ~~~~vvIIGgG~AGl~aA~~L~~~g~~~~~V~vie~~~   87 (469)
                      +-++|.|||+|.-|...|..+++.|+   +|+++|.++
T Consensus         3 ~I~~vaViGaG~mG~~iA~~~a~~G~---~V~l~D~~~   37 (186)
T d1wdka3           3 DVKQAAVLGAGIMGGGIAYQSASKGT---PILMKDINE   37 (186)
T ss_dssp             CCSSEEEECCHHHHHHHHHHHHHTTC---CEEEECSSH
T ss_pred             CCCEEEEECcCHHHHHHHHHHHhCCC---eEEEEECCH
Confidence            34689999999999999999999998   799999865

>d1n1ea2 c.2.1.6 (A:9-197) Glycerol-3- phosphate dehydrogenase {Trypanosome (Leishmania mexicana) [TaxId: 5665]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: 6-phosphogluconate dehydrogenase-like, N-terminal domain
domain: Glycerol-3- phosphate dehydrogenase
species: Trypanosome (Leishmania mexicana) [TaxId: 5665]

Probab=92.38  E-value=0.04  Score=45.63  Aligned_cols=36  Identities=14%  Similarity=0.163  Sum_probs=30.9

Q ss_pred             CCCCcEEEEcCcHHHHHHHHHHHHcCCCCCcEEEEcCCC
Q 012165           49 NENREFVIVGGGNAAGYAARTFVEHGMADGRLCIVSKEA   87 (469)
Q Consensus        49 ~~~~~vvIIGgG~AGl~aA~~L~~~g~~~~~V~vie~~~   87 (469)
                      +.|.+|+|||+|.=|.+.|..|.+.|+   +|++..+++
T Consensus         5 ~~m~KI~ViGaG~wGtAlA~~La~~g~---~V~l~~r~~   40 (189)
T d1n1ea2           5 LYLNKAVVFGSGAFGTALAMVLSKKCR---EVCVWHMNE   40 (189)
T ss_dssp             CCEEEEEEECCSHHHHHHHHHHHTTEE---EEEEECSCH
T ss_pred             ceeceEEEECCCHHHHHHHHHHHHcCC---eEEEEEecH
Confidence            445689999999999999999999887   799987653

>d2bi7a1 c.4.1.3 (A:2-247,A:317-384) UDP-galactopyranose mutase, N-terminal domain {Klebsiella pneumoniae [TaxId: 573]}

class: Alpha and beta proteins (a/b)
fold: Nucleotide-binding domain
superfamily: Nucleotide-binding domain
family: UDP-galactopyranose mutase, N-terminal domain
domain: UDP-galactopyranose mutase, N-terminal domain
species: Klebsiella pneumoniae [TaxId: 573]

Probab=92.37  E-value=0.052  Score=48.87  Aligned_cols=29  Identities=21%  Similarity=0.375  Sum_probs=26.8

Q ss_pred             CCeEEEEcCChHHHHHHHHHHhCCCeEee
Q 012165          207 AKKVVVVGGGYIGMEVAAAAVGWKLDTTR  235 (469)
Q Consensus       207 ~~~vvVvG~G~~g~e~A~~l~~~g~~v~~  235 (469)
                      .|+|+|||+|++|+-+|..|++.|.+|+.
T Consensus         2 ~KKI~IIGaG~sGL~aA~~L~k~G~~V~v   30 (314)
T d2bi7a1           2 SKKILIVGAGFSGAVIGRQLAEKGHQVHI   30 (314)
T ss_dssp             CCEEEEECCSHHHHHHHHHHHTTTCEEEE
T ss_pred             CCEEEEECCcHHHHHHHHHHHhCCCCEEE
Confidence            58999999999999999999999999873

>d1feca3 d.87.1.1 (A:358-485) Trypanothione reductase {Crithidia fasciculata [TaxId: 5656]}

class: Alpha and beta proteins (a+b)
fold: CO dehydrogenase flavoprotein C-domain-like
superfamily: FAD/NAD-linked reductases, dimerisation (C-terminal) domain
family: FAD/NAD-linked reductases, dimerisation (C-terminal) domain
domain: Trypanothione reductase
species: Crithidia fasciculata [TaxId: 5656]

Probab=92.25  E-value=0.026  Score=43.51  Aligned_cols=55  Identities=13%  Similarity=0.108  Sum_probs=40.5

Q ss_pred             EEEEEEe--CCEEEEEEeecCChHHhHHHH-HHHhCCCCCCh--hhhcCCCcHHHHHHHH
Q 012165          405 IATFWID--SGKLKGVLVESGSPEEFQLLP-TLARSQPFVDK--AKLQQASSVEEALEIA  459 (469)
Q Consensus       405 ~~~~~~~--~~~l~g~~~~~~~~~~~~~~~-~~~~~~~~~~~--~~~~~~~~~~~~~~~~  459 (469)
                      +.++.++  +|+|+|+++++.++.++...- .++..+.+++.  ..+..|||+.|+|...
T Consensus        54 ~~klv~~~~~g~iLGa~ivG~~A~ElI~~~~~ai~~~~t~~~l~~~i~~hPT~sE~l~~~  113 (128)
T d1feca3          54 MVRIVTNHADGEVLGVHMLGDSSPEIIQSVAICLKMGAKISDFYNTIGVHPTSAEELCSM  113 (128)
T ss_dssp             EEEEEEETTTTEEEEEEEESTTHHHHHHHHHHHHHTTCBHHHHHTSCCCSSCSGGGGGSC
T ss_pred             eEEEeecCCCCceeEEEEECCCHHHHHHHHHHHHHcCCcHHHHhcCcCCCCcHHHHHHHH
Confidence            5566654  599999999888887766654 45688887763  3347799999998654

>d1llda1 c.2.1.5 (A:7-149) Lactate dehydrogenase {Bifidobacterium longum, strain am101-2 [TaxId: 216816]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: LDH N-terminal domain-like
domain: Lactate dehydrogenase
species: Bifidobacterium longum, strain am101-2 [TaxId: 216816]

Probab=92.11  E-value=0.096  Score=41.00  Aligned_cols=34  Identities=12%  Similarity=0.303  Sum_probs=30.1

Q ss_pred             CcEEEEcCcHHHHHHHHHHHHcCCCCCcEEEEcCC
Q 012165           52 REFVIVGGGNAAGYAARTFVEHGMADGRLCIVSKE   86 (469)
Q Consensus        52 ~~vvIIGgG~AGl~aA~~L~~~g~~~~~V~vie~~   86 (469)
                      .+|.|||+|.-|.++|..|...+. -.++.|+|..
T Consensus         2 ~Ki~IIGaG~VG~~~a~~l~~~~l-~~ElvL~D~~   35 (143)
T d1llda1           2 TKLAVIGAGAVGSTLAFAAAQRGI-AREIVLEDIA   35 (143)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHTTC-CSEEEEECSS
T ss_pred             CEEEEECCCHHHHHHHHHHHhcCC-CcEEEEEEec
Confidence            579999999999999999999987 5689998854

>d1h6va3 d.87.1.1 (A:367-499) Mammalian thioredoxin reductase {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a+b)
fold: CO dehydrogenase flavoprotein C-domain-like
superfamily: FAD/NAD-linked reductases, dimerisation (C-terminal) domain
family: FAD/NAD-linked reductases, dimerisation (C-terminal) domain
domain: Mammalian thioredoxin reductase
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=92.07  E-value=0.061  Score=41.60  Aligned_cols=46  Identities=11%  Similarity=0.081  Sum_probs=35.9

Q ss_pred             eCCEEEEEEeecCChHHhHHH-HHHHhCCCCCCh--hhhcCCCcHHHHH
Q 012165          411 DSGKLKGVLVESGSPEEFQLL-PTLARSQPFVDK--AKLQQASSVEEAL  456 (469)
Q Consensus       411 ~~~~l~g~~~~~~~~~~~~~~-~~~~~~~~~~~~--~~~~~~~~~~~~~  456 (469)
                      ++++|+|++++++++.++... ..+++.+.+++.  ..+..|||+.|++
T Consensus        65 ~~~~ILGa~ivg~~A~ElI~~~~~ai~~~~t~~~l~~~i~~hPT~sE~~  113 (133)
T d1h6va3          65 DNERVVGFHVLGPNAGEVTQGFAAALKCGLTKQQLDSTIGIHPVCAEIF  113 (133)
T ss_dssp             GTTEEEEEEEESTTHHHHHHHHHHHHHTTCBHHHHHHSCCCTTCGGGGG
T ss_pred             CcccEEEEEEeCCCHHHHHHHHHHHHHcCCCHHHHhhccccCCCHHHHH
Confidence            368999999988888776654 556788888773  3358899999987

>d2g5ca2 c.2.1.6 (A:30-200) Prephenate dehydrogenase TyrA {Aquifex aeolicus [TaxId: 63363]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: 6-phosphogluconate dehydrogenase-like, N-terminal domain
domain: Prephenate dehydrogenase TyrA
species: Aquifex aeolicus [TaxId: 63363]

Probab=91.83  E-value=0.1  Score=42.10  Aligned_cols=36  Identities=22%  Similarity=0.368  Sum_probs=30.9

Q ss_pred             CCcEEEEcCcHHHHHHHHHHHHcCCCCCcEEEEcCCC
Q 012165           51 NREFVIVGGGNAAGYAARTFVEHGMADGRLCIVSKEA   87 (469)
Q Consensus        51 ~~~vvIIGgG~AGl~aA~~L~~~g~~~~~V~vie~~~   87 (469)
                      |++|.|||.|.-|.+.|+.|++.|+ ..+|+.+|+++
T Consensus         1 Mk~I~IIG~G~mG~sla~~L~~~g~-~~~I~~~D~~~   36 (171)
T d2g5ca2           1 MQNVLIVGVGFMGGSFAKSLRRSGF-KGKIYGYDINP   36 (171)
T ss_dssp             CCEEEEESCSHHHHHHHHHHHHTTC-CSEEEEECSCH
T ss_pred             CCEEEEEccCHHHHHHHHHHHhcCC-CeEEEEEECCh
Confidence            4579999999999999999999987 66788887653

>d1npya1 c.2.1.7 (A:103-269) Shikimate 5-dehydrogenase-like protein HI0607 {Haemophilus influenzae [TaxId: 727]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Aminoacid dehydrogenase-like, C-terminal domain
domain: Shikimate 5-dehydrogenase-like protein HI0607
species: Haemophilus influenzae [TaxId: 727]

Probab=91.64  E-value=0.1  Score=42.06  Aligned_cols=35  Identities=23%  Similarity=0.460  Sum_probs=30.0

Q ss_pred             CCCcEEEEcCcHHHHHHHHHHHHcCCCCCcEEEEcCC
Q 012165           50 ENREFVIVGGGNAAGYAARTFVEHGMADGRLCIVSKE   86 (469)
Q Consensus        50 ~~~~vvIIGgG~AGl~aA~~L~~~g~~~~~V~vie~~   86 (469)
                      ..++|+|+|+|-++-+++..|.+.|.+  +|+|+.+.
T Consensus        16 ~~~~vlIlGaGGaarai~~aL~~~g~~--~I~I~nR~   50 (167)
T d1npya1          16 KNAKVIVHGSGGMAKAVVAAFKNSGFE--KLKIYARN   50 (167)
T ss_dssp             TTSCEEEECSSTTHHHHHHHHHHTTCC--CEEEECSC
T ss_pred             CCCeEEEECCCHHHHHHHHHHHHCCCC--EEEEeccc
Confidence            457899999999999999999999864  78887654

>d1p3da1 c.5.1.1 (A:11-106) UDP-N-acetylmuramate-alanine ligase MurC {Haemophilus influenzae [TaxId: 727]}

class: Alpha and beta proteins (a/b)
fold: MurCD N-terminal domain
superfamily: MurCD N-terminal domain
family: MurCD N-terminal domain
domain: UDP-N-acetylmuramate-alanine ligase MurC
species: Haemophilus influenzae [TaxId: 727]

Probab=91.63  E-value=0.05  Score=39.43  Aligned_cols=70  Identities=19%  Similarity=0.222  Sum_probs=51.2

Q ss_pred             hcCCeEEEEcCChHHHHH-HHHHHhCCCeEe-------eeHHHHHHcCcEEEcCCeEEEEEeCCCCcEEEEEcCCCCEEe
Q 012165          205 EKAKKVVVVGGGYIGMEV-AAAAVGWKLDTT-------RYEQLYQQNGVKFVKGASIKNLEAGSDGRVAAVKLEDGSTID  276 (469)
Q Consensus       205 ~~~~~vvVvG~G~~g~e~-A~~l~~~g~~v~-------~~~~~l~~~gV~~~~~~~v~~i~~~~~~~v~~v~~~~g~~i~  276 (469)
                      ...+++-+||-|-+|+-. |..|.++|.+|+       ...+.+++.|+++..+.....+                  -.
T Consensus         6 ~~~~~ihfiGigG~GMs~LA~~L~~~G~~VsGSD~~~~~~~~~L~~~Gi~v~~g~~~~~i------------------~~   67 (96)
T d1p3da1           6 RRVQQIHFIGIGGAGMSGIAEILLNEGYQISGSDIADGVVTQRLAQAGAKIYIGHAEEHI------------------EG   67 (96)
T ss_dssp             TTCCEEEEETTTSTTHHHHHHHHHHHTCEEEEEESCCSHHHHHHHHTTCEEEESCCGGGG------------------TT
T ss_pred             hhCCEEEEEEECHHHHHHHHHHHHhCCCEEEEEeCCCChhhhHHHHCCCeEEECCccccC------------------CC
Confidence            457899999977777654 999999999998       4456778899998876422111                  13


Q ss_pred             CCEEEEccCCccCCch
Q 012165          277 ADTIVIGIGAKPTVSP  292 (469)
Q Consensus       277 ~D~vi~a~G~~p~~~~  292 (469)
                      +|+||.+.+...+...
T Consensus        68 ~d~vV~S~AI~~~npe   83 (96)
T d1p3da1          68 ASVVVVSSAIKDDNPE   83 (96)
T ss_dssp             CSEEEECTTSCTTCHH
T ss_pred             CCEEEECCCcCCCCHH
Confidence            6899999998765543

>d1cf3a1 c.3.1.2 (A:3-324,A:521-583) Glucose oxidase {Aspergillus niger [TaxId: 5061]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD-linked reductases, N-terminal domain
domain: Glucose oxidase
species: Aspergillus niger [TaxId: 5061]

Probab=91.30  E-value=0.15  Score=47.18  Aligned_cols=58  Identities=19%  Similarity=0.438  Sum_probs=37.7

Q ss_pred             HHHcCcEEEcCCeEEEEEeCCCC---cEEEEEc--CCCC--EEeCCE-EEEccCCccCCchhhhcC
Q 012165          240 YQQNGVKFVKGASIKNLEAGSDG---RVAAVKL--EDGS--TIDADT-IVIGIGAKPTVSPFERVG  297 (469)
Q Consensus       240 l~~~gV~~~~~~~v~~i~~~~~~---~v~~v~~--~~g~--~i~~D~-vi~a~G~~p~~~~~~~~g  297 (469)
                      +++.++++++++.|++|.-++++   ++++|++  .+|+  ++.+.. ||+|.|..-...+|..+|
T Consensus       235 ~~~~nl~i~t~~~V~rI~~~~~~~~~ra~GV~~~~~~g~~~~v~A~keVILsAGAi~SP~LLl~SG  300 (385)
T d1cf3a1         235 YQRPNLQVLTGQYVGKVLLSQNGTTPRAVGVEFGTHKGNTHNVYAKHEVLLAAGSAVSPTILEYSG  300 (385)
T ss_dssp             TTCTTEEEEESCEEEEEEEECSSSSCEEEEEEEEEETTEEEEEEEEEEEEECSCTTTHHHHHHHTT
T ss_pred             hcCCcccccCCceEEEEEEcCCCceeEEEEEEEEcCCCCEEEEEeCCEEEEcCchhhCHHHHHhcC
Confidence            34568999999999998644332   5667765  4564  466765 999999654334443333

>d1uxja1 c.2.1.5 (A:2-143) Malate dehydrogenase {Chloroflexus aurantiacus [TaxId: 1108]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: LDH N-terminal domain-like
domain: Malate dehydrogenase
species: Chloroflexus aurantiacus [TaxId: 1108]

Probab=90.96  E-value=0.13  Score=40.13  Aligned_cols=34  Identities=12%  Similarity=0.292  Sum_probs=29.2

Q ss_pred             CcEEEEcCcHHHHHHHHHHHHcCCCCCcEEEEcCCC
Q 012165           52 REFVIVGGGNAAGYAARTFVEHGMADGRLCIVSKEA   87 (469)
Q Consensus        52 ~~vvIIGgG~AGl~aA~~L~~~g~~~~~V~vie~~~   87 (469)
                      ++|.|||+|.-|.++|..|...+..  ++.++|..+
T Consensus         2 ~KI~IIGaG~VG~~~A~~l~~~~l~--dl~l~D~~~   35 (142)
T d1uxja1           2 KKISIIGAGFVGSTTAHWLAAKELG--DIVLLDIVE   35 (142)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHHTCS--EEEEECSSS
T ss_pred             CeEEEECCCHHHHHHHHHHHhCCcc--eEEEEeecc
Confidence            5899999999999999999988763  788888543

>d1kjqa2 c.30.1.1 (A:2-112) Glycinamide ribonucleotide transformylase PurT, N-domain {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: PreATP-grasp domain
superfamily: PreATP-grasp domain
family: BC N-terminal domain-like
domain: Glycinamide ribonucleotide transformylase PurT, N-domain
species: Escherichia coli [TaxId: 562]

Probab=90.82  E-value=0.14  Score=37.98  Aligned_cols=29  Identities=28%  Similarity=0.472  Sum_probs=26.3

Q ss_pred             cCCeEEEEcCChHHHHHHHHHHhCCCeEe
Q 012165          206 KAKKVVVVGGGYIGMEVAAAAVGWKLDTT  234 (469)
Q Consensus       206 ~~~~vvVvG~G~~g~e~A~~l~~~g~~v~  234 (469)
                      ...+|.|+|||..|..++.+..++|.++.
T Consensus        10 ~~~kigIlGgGQL~rMla~aA~~lG~~v~   38 (111)
T d1kjqa2          10 AATRVMLLGSGELGKEVAIECQRLGVEVI   38 (111)
T ss_dssp             TCCEEEEESCSHHHHHHHHHHHTTTCEEE
T ss_pred             CCCEEEEEeCCHHHHHHHHHHHHCCCEEE
Confidence            34679999999999999999999999886

>d1hdoa_ c.2.1.2 (A:) Biliverdin IX beta reductase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Biliverdin IX beta reductase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=90.81  E-value=0.12  Score=42.97  Aligned_cols=36  Identities=14%  Similarity=0.309  Sum_probs=31.2

Q ss_pred             CCCCcEEEEcC-cHHHHHHHHHHHHcCCCCCcEEEEcCCC
Q 012165           49 NENREFVIVGG-GNAAGYAARTFVEHGMADGRLCIVSKEA   87 (469)
Q Consensus        49 ~~~~~vvIIGg-G~AGl~aA~~L~~~g~~~~~V~vie~~~   87 (469)
                      |.+++|+|+|| |.-|-..+.+|.++|+   +|+++.+++
T Consensus         1 m~~kkIlV~GatG~iG~~v~~~Ll~~g~---~V~~~~R~~   37 (205)
T d1hdoa_           1 MAVKKIAIFGATGQTGLTTLAQAVQAGY---EVTVLVRDS   37 (205)
T ss_dssp             CCCCEEEEESTTSHHHHHHHHHHHHTTC---EEEEEESCG
T ss_pred             CCCCEEEEECCCCHHHHHHHHHHHHCcC---EEEEEEcCh
Confidence            45688999996 9999999999999998   799987654

>d1guza1 c.2.1.5 (A:1-142) Malate dehydrogenase {Chlorobium vibrioforme [TaxId: 1098]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: LDH N-terminal domain-like
domain: Malate dehydrogenase
species: Chlorobium vibrioforme [TaxId: 1098]

Probab=90.78  E-value=0.14  Score=39.86  Aligned_cols=34  Identities=18%  Similarity=0.368  Sum_probs=29.7

Q ss_pred             cEEEEcCcHHHHHHHHHHHHcCCCCCcEEEEcCCC
Q 012165           53 EFVIVGGGNAAGYAARTFVEHGMADGRLCIVSKEA   87 (469)
Q Consensus        53 ~vvIIGgG~AGl~aA~~L~~~g~~~~~V~vie~~~   87 (469)
                      +|.|||+|.-|.++|..|...+. -.++.++|..+
T Consensus         2 KI~IIGaG~VG~~la~~l~~~~l-~~el~L~Di~~   35 (142)
T d1guza1           2 KITVIGAGNVGATTAFRLAEKQL-ARELVLLDVVE   35 (142)
T ss_dssp             EEEEECCSHHHHHHHHHHHHTTC-CSEEEEECSSS
T ss_pred             EEEEECcCHHHHHHHHHHHhCCC-CceEEEecccc
Confidence            69999999999999999999886 55899998654

>d3etja2 c.30.1.1 (A:1-78) N5-carboxyaminoimidazole ribonucleotide synthetase PurK (AIRC), N-domain {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: PreATP-grasp domain
superfamily: PreATP-grasp domain
family: BC N-terminal domain-like
domain: N5-carboxyaminoimidazole ribonucleotide synthetase PurK (AIRC), N-domain
species: Escherichia coli [TaxId: 562]

Probab=90.71  E-value=0.095  Score=36.11  Aligned_cols=36  Identities=14%  Similarity=0.201  Sum_probs=32.2

Q ss_pred             CCcEEEEcCcHHHHHHHHHHHHcCCCCCcEEEEcCCCCC
Q 012165           51 NREFVIVGGGNAAGYAARTFVEHGMADGRLCIVSKEAYA   89 (469)
Q Consensus        51 ~~~vvIIGgG~AGl~aA~~L~~~g~~~~~V~vie~~~~~   89 (469)
                      +++|.|+|||-=|-..+....+.|+   ++.++++++..
T Consensus         1 ~k~vgIlG~GQLgrMl~~Aa~~LG~---~v~vldp~~~~   36 (78)
T d3etja2           1 MKQVCVLGNGQLGRMLRQAGEPLGI---AVWPVGLDAEP   36 (78)
T ss_dssp             CEEEEEEBCSHHHHHHHHHHGGGTE---EEEEECTTSCG
T ss_pred             CCEEEEEcCCHHHHHHHHHHHHcCC---EEEEEcCCCCC
Confidence            3689999999999999999999998   79999987664

>d1gpea1 c.3.1.2 (A:1-328,A:525-587) Glucose oxidase {Penicillium amagasakiense [TaxId: 63559]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD-linked reductases, N-terminal domain
domain: Glucose oxidase
species: Penicillium amagasakiense [TaxId: 63559]

Probab=90.63  E-value=0.097  Score=48.59  Aligned_cols=56  Identities=13%  Similarity=0.253  Sum_probs=36.1

Q ss_pred             HHHcCcEEEcCCeEEEEEe--CCC-CcEEEEEcC--CCC--EEeCCE-EEEccCCccCCchhhh
Q 012165          240 YQQNGVKFVKGASIKNLEA--GSD-GRVAAVKLE--DGS--TIDADT-IVIGIGAKPTVSPFER  295 (469)
Q Consensus       240 l~~~gV~~~~~~~v~~i~~--~~~-~~v~~v~~~--~g~--~i~~D~-vi~a~G~~p~~~~~~~  295 (469)
                      ..+.++++++++.|++|.-  ..+ .++++|++.  +|.  ++.+.. ||+|.|..-...+|..
T Consensus       241 ~~r~nl~i~t~a~V~rIl~~~~~~g~ra~GV~~~~~~g~~~~v~A~keVILaAGai~SP~LLl~  304 (391)
T d1gpea1         241 YQRSNLEILTGQMVGKVLFKQTASGPQAVGVNFGTNKAVNFDVFAKHEVLLAAGSAISPLILEY  304 (391)
T ss_dssp             TTCTTEEEEESCEEEEEEEEEETTEEEEEEEEEEEETTEEEEEEEEEEEEECSCTTTHHHHHHH
T ss_pred             ccchhhhhhccceeeEEeeeCCCCCceEEeeEEecCCCeEEEEEeCCEEEEecchhcchHHHHh
Confidence            3457899999999999842  222 256677653  443  466765 9999997543344433

>d1mv8a2 c.2.1.6 (A:1-202) GDP-mannose 6-dehydrogenase {Pseudomonas aeruginosa [TaxId: 287]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: 6-phosphogluconate dehydrogenase-like, N-terminal domain
domain: GDP-mannose 6-dehydrogenase
species: Pseudomonas aeruginosa [TaxId: 287]

Probab=90.60  E-value=0.1  Score=43.51  Aligned_cols=32  Identities=19%  Similarity=0.213  Sum_probs=29.3

Q ss_pred             cEEEEcCcHHHHHHHHHHHHcCCCCCcEEEEcCCC
Q 012165           53 EFVIVGGGNAAGYAARTFVEHGMADGRLCIVSKEA   87 (469)
Q Consensus        53 ~vvIIGgG~AGl~aA~~L~~~g~~~~~V~vie~~~   87 (469)
                      +|.|||.|.-|+..|..|++.|+   +|+.+|.+.
T Consensus         2 kI~ViGlG~vGl~~a~~la~~g~---~V~g~D~n~   33 (202)
T d1mv8a2           2 RISIFGLGYVGAVCAGCLSARGH---EVIGVDVSS   33 (202)
T ss_dssp             EEEEECCSTTHHHHHHHHHHTTC---EEEEECSCH
T ss_pred             EEEEECCCHhHHHHHHHHHhCCC---cEEEEeCCH
Confidence            59999999999999999999998   799999764

>d1nyta1 c.2.1.7 (A:102-271) Shikimate 5-dehydrogenase AroE {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Aminoacid dehydrogenase-like, C-terminal domain
domain: Shikimate 5-dehydrogenase AroE
species: Escherichia coli [TaxId: 562]

Probab=90.14  E-value=0.17  Score=40.76  Aligned_cols=35  Identities=11%  Similarity=0.249  Sum_probs=30.1

Q ss_pred             CCCCcEEEEcCcHHHHHHHHHHHHcCCCCCcEEEEcCC
Q 012165           49 NENREFVIVGGGNAAGYAARTFVEHGMADGRLCIVSKE   86 (469)
Q Consensus        49 ~~~~~vvIIGgG~AGl~aA~~L~~~g~~~~~V~vie~~   86 (469)
                      ...++|+|+|+|-|+-+++..|.+.|.   +|+|+.+.
T Consensus        16 ~~~k~vlIlGaGGaarai~~al~~~g~---~i~I~nRt   50 (170)
T d1nyta1          16 RPGLRILLIGAGGASRGVLLPLLSLDC---AVTITNRT   50 (170)
T ss_dssp             CTTCEEEEECCSHHHHHHHHHHHHTTC---EEEEECSS
T ss_pred             CCCCEEEEECCcHHHHHHHHHhcccce---EEEeccch
Confidence            356799999999999999999999875   69988754

>d1id1a_ c.2.1.9 (A:) Rck domain from putative potassium channel Kch {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Potassium channel NAD-binding domain
domain: Rck domain from putative potassium channel Kch
species: Escherichia coli [TaxId: 562]

Probab=90.14  E-value=0.19  Score=39.57  Aligned_cols=33  Identities=15%  Similarity=0.254  Sum_probs=29.7

Q ss_pred             CcEEEEcCcHHHHHHHHHHHHcCCCCCcEEEEcCCC
Q 012165           52 REFVIVGGGNAAGYAARTFVEHGMADGRLCIVSKEA   87 (469)
Q Consensus        52 ~~vvIIGgG~AGl~aA~~L~~~g~~~~~V~vie~~~   87 (469)
                      -+|+|+|.|.-|...+..|.+.|.   ++++|+.++
T Consensus         4 nHiII~G~g~~g~~l~~~L~~~~~---~v~vId~d~   36 (153)
T d1id1a_           4 DHFIVCGHSILAINTILQLNQRGQ---NVTVISNLP   36 (153)
T ss_dssp             SCEEEECCSHHHHHHHHHHHHTTC---CEEEEECCC
T ss_pred             CEEEEECCCHHHHHHHHHHHHcCC---CEEEEeccc
Confidence            479999999999999999999987   799998765

>d1vi2a1 c.2.1.7 (A:107-288) Putative shikimate dehydrogenase YdiB {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Aminoacid dehydrogenase-like, C-terminal domain
domain: Putative shikimate dehydrogenase YdiB
species: Escherichia coli [TaxId: 562]

Probab=89.54  E-value=0.21  Score=40.71  Aligned_cols=36  Identities=14%  Similarity=0.333  Sum_probs=30.8

Q ss_pred             CCCcEEEEcCcHHHHHHHHHHHHcCCCCCcEEEEcCCC
Q 012165           50 ENREFVIVGGGNAAGYAARTFVEHGMADGRLCIVSKEA   87 (469)
Q Consensus        50 ~~~~vvIIGgG~AGl~aA~~L~~~g~~~~~V~vie~~~   87 (469)
                      ..++|+|+|+|-+|-+++..|.+.|.+  +|+++.+.+
T Consensus        17 ~~k~vlIlGaGGaarai~~al~~~g~~--~i~i~nR~~   52 (182)
T d1vi2a1          17 KGKTMVLLGAGGASTAIGAQGAIEGLK--EIKLFNRRD   52 (182)
T ss_dssp             TTCEEEEECCSHHHHHHHHHHHHTTCS--EEEEEECSS
T ss_pred             CCCEEEEECCcHHHHHHHHHHhhcCCc--eEeeeccch
Confidence            457999999999999999999999864  788887653

>d1mlda1 c.2.1.5 (A:1-144) Malate dehydrogenase {Pig (Sus scrofa) [TaxId: 9823]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: LDH N-terminal domain-like
domain: Malate dehydrogenase
species: Pig (Sus scrofa) [TaxId: 9823]

Probab=89.48  E-value=0.14  Score=40.00  Aligned_cols=33  Identities=12%  Similarity=0.208  Sum_probs=28.8

Q ss_pred             cEEEEcC-cHHHHHHHHHHHHcCCCCCcEEEEcCC
Q 012165           53 EFVIVGG-GNAAGYAARTFVEHGMADGRLCIVSKE   86 (469)
Q Consensus        53 ~vvIIGg-G~AGl~aA~~L~~~g~~~~~V~vie~~   86 (469)
                      +|+|||+ |.-|.++|..|...+. -.++.++|.+
T Consensus         2 Kv~IiGA~G~VG~~~A~~l~~~~~-~~elvLiDi~   35 (144)
T d1mlda1           2 KVAVLGASGGIGQPLSLLLKNSPL-VSRLTLYDIA   35 (144)
T ss_dssp             EEEEETTTSTTHHHHHHHHHTCTT-CSEEEEEESS
T ss_pred             eEEEECCCChHHHHHHHHHHhCCc-cceEEEEecc
Confidence            6999996 9999999999999887 5689999854

>d1ojua1 c.2.1.5 (A:22-163) Malate dehydrogenase {Archaeon Archaeoglobus fulgidus [TaxId: 2234]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: LDH N-terminal domain-like
domain: Malate dehydrogenase
species: Archaeon Archaeoglobus fulgidus [TaxId: 2234]

Probab=89.17  E-value=0.2  Score=38.96  Aligned_cols=33  Identities=18%  Similarity=0.181  Sum_probs=29.0

Q ss_pred             cEEEEcCcHHHHHHHHHHHHcCCCCCcEEEEcCC
Q 012165           53 EFVIVGGGNAAGYAARTFVEHGMADGRLCIVSKE   86 (469)
Q Consensus        53 ~vvIIGgG~AGl~aA~~L~~~g~~~~~V~vie~~   86 (469)
                      +|.|||+|.-|.++|..|...+. -.++.|+|.+
T Consensus         2 KI~IIGaG~VG~~~a~~l~~~~~-~~elvL~Di~   34 (142)
T d1ojua1           2 KLGFVGAGRVGSTSAFTCLLNLD-VDEIALVDIA   34 (142)
T ss_dssp             EEEEECCSHHHHHHHHHHHHHSC-CSEEEEECSS
T ss_pred             EEEEECcCHHHHHHHHHHHhcCc-CceEEEEecc
Confidence            69999999999999999998886 5589999854

>d1t2da1 c.2.1.5 (A:1-150) Lactate dehydrogenase {Malaria parasite (Plasmodium falciparum) [TaxId: 5833]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: LDH N-terminal domain-like
domain: Lactate dehydrogenase
species: Malaria parasite (Plasmodium falciparum) [TaxId: 5833]

Probab=88.99  E-value=0.26  Score=38.67  Aligned_cols=35  Identities=23%  Similarity=0.437  Sum_probs=29.4

Q ss_pred             CCcEEEEcCcHHHHHHHHHHHHcCCCCCcEEEEcCCC
Q 012165           51 NREFVIVGGGNAAGYAARTFVEHGMADGRLCIVSKEA   87 (469)
Q Consensus        51 ~~~vvIIGgG~AGl~aA~~L~~~g~~~~~V~vie~~~   87 (469)
                      +.+|.|||+|.-|.++|..|...+.  .++.|+|..+
T Consensus         3 ~~KI~IIGaG~VG~~~a~~l~~~~l--~el~L~Di~~   37 (150)
T d1t2da1           3 KAKIVLVGSGMIGGVMATLIVQKNL--GDVVLFDIVK   37 (150)
T ss_dssp             CCEEEEECCSHHHHHHHHHHHHTTC--CEEEEECSSS
T ss_pred             CCeEEEECCCHHHHHHHHHHHhCCC--CeEEEEeccC
Confidence            3589999999999999998888876  3799998643

>d1a5za1 c.2.1.5 (A:22-163) Lactate dehydrogenase {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: LDH N-terminal domain-like
domain: Lactate dehydrogenase
species: Thermotoga maritima [TaxId: 2336]

Probab=88.98  E-value=0.22  Score=38.70  Aligned_cols=33  Identities=18%  Similarity=0.353  Sum_probs=29.0

Q ss_pred             cEEEEcCcHHHHHHHHHHHHcCCCCCcEEEEcCC
Q 012165           53 EFVIVGGGNAAGYAARTFVEHGMADGRLCIVSKE   86 (469)
Q Consensus        53 ~vvIIGgG~AGl~aA~~L~~~g~~~~~V~vie~~   86 (469)
                      +|.|||+|.-|.++|..|...+. -.++.++|.+
T Consensus         2 KI~IIGaG~VG~~~a~~l~~~~l-~~el~L~Di~   34 (140)
T d1a5za1           2 KIGIVGLGRVGSSTAFALLMKGF-AREMVLIDVD   34 (140)
T ss_dssp             EEEEECCSHHHHHHHHHHHHHTC-CSEEEEECSS
T ss_pred             EEEEECcCHHHHHHHHHHHhCCC-CCEEEEEecc
Confidence            68999999999999999999886 5589998854

>d1i8ta1 c.4.1.3 (A:1-244,A:314-367) UDP-galactopyranose mutase, N-terminal domain {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: Nucleotide-binding domain
superfamily: Nucleotide-binding domain
family: UDP-galactopyranose mutase, N-terminal domain
domain: UDP-galactopyranose mutase, N-terminal domain
species: Escherichia coli [TaxId: 562]

Probab=88.79  E-value=0.14  Score=45.50  Aligned_cols=28  Identities=18%  Similarity=0.242  Sum_probs=25.3

Q ss_pred             eEEEEcCChHHHHHHHHHHhCCCeEeee
Q 012165          209 KVVVVGGGYIGMEVAAAAVGWKLDTTRY  236 (469)
Q Consensus       209 ~vvVvG~G~~g~e~A~~l~~~g~~v~~~  236 (469)
                      .++|||+|++|+-+|..|++.|.+|+.+
T Consensus         3 dv~IIGaG~sGl~~A~~L~~~g~~V~ii   30 (298)
T d1i8ta1           3 DYIIVGSGLFGAVCANELKKLNKKVLVI   30 (298)
T ss_dssp             EEEEECCSHHHHHHHHHHGGGTCCEEEE
T ss_pred             cEEEECCcHHHHHHHHHHHhCCCcEEEE
Confidence            5899999999999999999999998733

>d1gpja2 c.2.1.7 (A:144-302) Glutamyl tRNA-reductase middle domain {Archaeon Methanopyrus kandleri [TaxId: 2320]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Aminoacid dehydrogenase-like, C-terminal domain
domain: Glutamyl tRNA-reductase middle domain
species: Archaeon Methanopyrus kandleri [TaxId: 2320]

Probab=88.22  E-value=0.28  Score=38.97  Aligned_cols=36  Identities=17%  Similarity=0.477  Sum_probs=30.8

Q ss_pred             CCCCcEEEEcCcHHHHHHHHHHHHcCCCCCcEEEEcCC
Q 012165           49 NENREFVIVGGGNAAGYAARTFVEHGMADGRLCIVSKE   86 (469)
Q Consensus        49 ~~~~~vvIIGgG~AGl~aA~~L~~~g~~~~~V~vie~~   86 (469)
                      ...++|+|||+|-.|-..+..|...|..  ++++..+.
T Consensus        22 l~~~~ilviGaG~~g~~v~~~L~~~g~~--~i~v~nRt   57 (159)
T d1gpja2          22 LHDKTVLVVGAGEMGKTVAKSLVDRGVR--AVLVANRT   57 (159)
T ss_dssp             CTTCEEEEESCCHHHHHHHHHHHHHCCS--EEEEECSS
T ss_pred             cccCeEEEECCCHHHHHHHHHHHhcCCc--EEEEEcCc
Confidence            4568999999999999999999999863  68887754

>d1e5qa1 c.2.1.3 (A:2-124,A:392-450) Saccharopine reductase {Rice blast fungus (Magnaporthe grisea) [TaxId: 148305]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain
domain: Saccharopine reductase
species: Rice blast fungus (Magnaporthe grisea) [TaxId: 148305]

Probab=88.20  E-value=0.19  Score=40.34  Aligned_cols=28  Identities=18%  Similarity=0.357  Sum_probs=26.7

Q ss_pred             CCeEEEEcCChHHHHHHHHHHhCCCeEe
Q 012165          207 AKKVVVVGGGYIGMEVAAAAVGWKLDTT  234 (469)
Q Consensus       207 ~~~vvVvG~G~~g~e~A~~l~~~g~~v~  234 (469)
                      .|+|+|+|+|.+|..+|..|.+.|.+|+
T Consensus         2 ~K~IliiGaG~~G~~~a~~L~~~g~~V~   29 (182)
T d1e5qa1           2 TKSVLMLGSGFVTRPTLDVLTDSGIKVT   29 (182)
T ss_dssp             CCEEEEECCSTTHHHHHHHHHTTTCEEE
T ss_pred             CCEEEEECCCHHHHHHHHHHHhCCCEEE
Confidence            5899999999999999999999999998

>d1jw9b_ c.111.1.1 (B:) Molybdenum cofactor biosynthesis protein MoeB {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: Activating enzymes of the ubiquitin-like proteins
superfamily: Activating enzymes of the ubiquitin-like proteins
family: Molybdenum cofactor biosynthesis protein MoeB
domain: Molybdenum cofactor biosynthesis protein MoeB
species: Escherichia coli [TaxId: 562]

Probab=88.14  E-value=0.23  Score=42.62  Aligned_cols=36  Identities=19%  Similarity=0.345  Sum_probs=32.3

Q ss_pred             CCcEEEEcCcHHHHHHHHHHHHcCCCCCcEEEEcCCCC
Q 012165           51 NREFVIVGGGNAAGYAARTFVEHGMADGRLCIVSKEAY   88 (469)
Q Consensus        51 ~~~vvIIGgG~AGl~aA~~L~~~g~~~~~V~vie~~~~   88 (469)
                      ..+|+|||.|--|..+|..|.+.|..  +++++|.+..
T Consensus        30 ~~~VliiG~GglGs~va~~La~~Gvg--~i~lvD~D~V   65 (247)
T d1jw9b_          30 DSRVLIVGLGGLGCAASQYLASAGVG--NLTLLDFDTV   65 (247)
T ss_dssp             HCEEEEECCSHHHHHHHHHHHHHTCS--EEEEECCCBC
T ss_pred             CCCEEEECCCHHHHHHHHHHHHcCCC--eEEEECCccc
Confidence            46899999999999999999999974  9999997754

>d1hyea1 c.2.1.5 (A:1-145) MJ0490, lactate/malate dehydrogenase {Archaeon Methanococcus jannaschii [TaxId: 2190]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: LDH N-terminal domain-like
domain: MJ0490, lactate/malate dehydrogenase
species: Archaeon Methanococcus jannaschii [TaxId: 2190]

Probab=88.14  E-value=0.21  Score=39.08  Aligned_cols=33  Identities=18%  Similarity=0.371  Sum_probs=28.7

Q ss_pred             cEEEEcC-cHHHHHHHHHHHHcCCCCCcEEEEcCC
Q 012165           53 EFVIVGG-GNAAGYAARTFVEHGMADGRLCIVSKE   86 (469)
Q Consensus        53 ~vvIIGg-G~AGl~aA~~L~~~g~~~~~V~vie~~   86 (469)
                      +|.|||+ |.-|.++|..|...+. -.++.|+|..
T Consensus         2 KV~IiGA~G~VG~~~a~~l~~~~l-~~el~L~D~~   35 (145)
T d1hyea1           2 KVTIIGASGRVGSATALLLAKEPF-MKDLVLIGRE   35 (145)
T ss_dssp             EEEEETTTSHHHHHHHHHHHTCTT-CCEEEEEECG
T ss_pred             EEEEECCCChHHHHHHHHHHhCCc-ccccccccch
Confidence            5999996 9999999999999886 5589998865

>d1lssa_ c.2.1.9 (A:) Ktn Mja218 {Archaeon Methanococcus jannaschii [TaxId: 2190]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Potassium channel NAD-binding domain
domain: Ktn Mja218
species: Archaeon Methanococcus jannaschii [TaxId: 2190]

Probab=87.99  E-value=0.39  Score=36.57  Aligned_cols=26  Identities=19%  Similarity=0.298  Sum_probs=24.7

Q ss_pred             eEEEEcCChHHHHHHHHHHhCCCeEe
Q 012165          209 KVVVVGGGYIGMEVAAAAVGWKLDTT  234 (469)
Q Consensus       209 ~vvVvG~G~~g~e~A~~l~~~g~~v~  234 (469)
                      +|+|+|+|..|..+|..|.+.|.++.
T Consensus         2 ~IvI~G~G~~G~~la~~L~~~g~~v~   27 (132)
T d1lssa_           2 YIIIAGIGRVGYTLAKSLSEKGHDIV   27 (132)
T ss_dssp             EEEEECCSHHHHHHHHHHHHTTCEEE
T ss_pred             EEEEECCCHHHHHHHHHHHHCCCCcc
Confidence            68999999999999999999999987

>d2f1ka2 c.2.1.6 (A:1-165) Prephenate dehydrogenase TyrA {Synechocystis sp. pcc 6803 [TaxId: 1148]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: 6-phosphogluconate dehydrogenase-like, N-terminal domain
domain: Prephenate dehydrogenase TyrA
species: Synechocystis sp. pcc 6803 [TaxId: 1148]

Probab=87.79  E-value=0.27  Score=39.09  Aligned_cols=32  Identities=25%  Similarity=0.235  Sum_probs=28.4

Q ss_pred             cEEEEcCcHHHHHHHHHHHHcCCCCCcEEEEcCCC
Q 012165           53 EFVIVGGGNAAGYAARTFVEHGMADGRLCIVSKEA   87 (469)
Q Consensus        53 ~vvIIGgG~AGl~aA~~L~~~g~~~~~V~vie~~~   87 (469)
                      +|.|||.|.-|.+.|..|++.|+   +|+++|+.+
T Consensus         2 kI~iIG~G~mG~~lA~~l~~~g~---~V~~~d~~~   33 (165)
T d2f1ka2           2 KIGVVGLGLIGASLAGDLRRRGH---YLIGVSRQQ   33 (165)
T ss_dssp             EEEEECCSHHHHHHHHHHHHTTC---EEEEECSCH
T ss_pred             EEEEEeecHHHHHHHHHHHHCCC---EEEEEECCc
Confidence            59999999999999999999998   798887653

>d2hmva1 c.2.1.9 (A:7-140) Ktn bsu222 {Bacillus subtilis [TaxId: 1423]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Potassium channel NAD-binding domain
domain: Ktn bsu222
species: Bacillus subtilis [TaxId: 1423]

Probab=87.55  E-value=0.25  Score=37.78  Aligned_cols=27  Identities=19%  Similarity=0.233  Sum_probs=25.4

Q ss_pred             CeEEEEcCChHHHHHHHHHHhCCCeEe
Q 012165          208 KKVVVVGGGYIGMEVAAAAVGWKLDTT  234 (469)
Q Consensus       208 ~~vvVvG~G~~g~e~A~~l~~~g~~v~  234 (469)
                      |+++|+|.|..|..+|..|.+.|.++.
T Consensus         1 k~~iIiG~G~~G~~la~~L~~~g~~vv   27 (134)
T d2hmva1           1 KQFAVIGLGRFGGSIVKELHRMGHEVL   27 (134)
T ss_dssp             CCEEEECCSHHHHHHHHHHHHTTCCCE
T ss_pred             CEEEEECCCHHHHHHHHHHHHCCCeEE
Confidence            579999999999999999999999987

>d1txga2 c.2.1.6 (A:1-180) Glycerol-3- phosphate dehydrogenase {Archaeoglobus fulgidus [TaxId: 2234]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: 6-phosphogluconate dehydrogenase-like, N-terminal domain
domain: Glycerol-3- phosphate dehydrogenase
species: Archaeoglobus fulgidus [TaxId: 2234]

Probab=87.41  E-value=0.26  Score=40.02  Aligned_cols=30  Identities=20%  Similarity=0.304  Sum_probs=27.4

Q ss_pred             cEEEEcCcHHHHHHHHHHHHcCCCCCcEEEEcC
Q 012165           53 EFVIVGGGNAAGYAARTFVEHGMADGRLCIVSK   85 (469)
Q Consensus        53 ~vvIIGgG~AGl~aA~~L~~~g~~~~~V~vie~   85 (469)
                      +|.|||+|.-|.+.|..|.+.|+   +|++..+
T Consensus         2 kI~ViGaG~~GtalA~~la~~g~---~V~l~~r   31 (180)
T d1txga2           2 IVSILGAGAMGSALSVPLVDNGN---EVRIWGT   31 (180)
T ss_dssp             EEEEESCCHHHHHHHHHHHHHCC---EEEEECC
T ss_pred             EEEEECCCHHHHHHHHHHHHCCC---EEEEEEe
Confidence            69999999999999999999987   7999865

>d1pl8a2 c.2.1.1 (A:146-316) Ketose reductase (sorbitol dehydrogenase) {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Ketose reductase (sorbitol dehydrogenase)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=86.85  E-value=0.31  Score=39.01  Aligned_cols=35  Identities=14%  Similarity=0.218  Sum_probs=29.2

Q ss_pred             CCcEEEEcCcHHHHHHHHHHHHcCCCCCcEEEEcCCC
Q 012165           51 NREFVIVGGGNAAGYAARTFVEHGMADGRLCIVSKEA   87 (469)
Q Consensus        51 ~~~vvIIGgG~AGl~aA~~L~~~g~~~~~V~vie~~~   87 (469)
                      ...|+|+|+|+-|+.++..++..|..  +|+++|..+
T Consensus        27 gd~VlI~G~G~iG~~~~~~a~~~G~~--~Vi~~d~~~   61 (171)
T d1pl8a2          27 GHKVLVCGAGPIGMVTLLVAKAMGAA--QVVVTDLSA   61 (171)
T ss_dssp             TCEEEEECCSHHHHHHHHHHHHTTCS--EEEEEESCH
T ss_pred             CCEEEEECCCccHHHHHHHHHHcCCc--eEEeccCCH
Confidence            35799999999999999999988753  688888654

>d1o6za1 c.2.1.5 (A:22-162) Malate dehydrogenase {Archaeon Haloarcula marismortui [TaxId: 2238]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: LDH N-terminal domain-like
domain: Malate dehydrogenase
species: Archaeon Haloarcula marismortui [TaxId: 2238]

Probab=86.24  E-value=0.43  Score=36.96  Aligned_cols=32  Identities=16%  Similarity=0.291  Sum_probs=28.1

Q ss_pred             cEEEEc-CcHHHHHHHHHHHHcCCCCCcEEEEcC
Q 012165           53 EFVIVG-GGNAAGYAARTFVEHGMADGRLCIVSK   85 (469)
Q Consensus        53 ~vvIIG-gG~AGl~aA~~L~~~g~~~~~V~vie~   85 (469)
                      +|.||| +|.-|.++|..|...+. -.++.|+|-
T Consensus         2 KV~IiGaaG~VG~~~A~~l~~~~l-~~el~L~Di   34 (142)
T d1o6za1           2 KVSVVGAAGTVGAAAGYNIALRDI-ADEVVFVDI   34 (142)
T ss_dssp             EEEEETTTSHHHHHHHHHHHHTTC-CSEEEEECC
T ss_pred             eEEEECCCCcHHHHHHHHHHhCCC-CCEEEEEec
Confidence            799999 69999999999999987 567888874

>d1ju2a1 c.3.1.2 (A:1-293,A:464-521) Hydroxynitrile lyase {Almond (Prunus dulcis) [TaxId: 3755]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD-linked reductases, N-terminal domain
domain: Hydroxynitrile lyase
species: Almond (Prunus dulcis) [TaxId: 3755]

Probab=86.11  E-value=0.3  Score=44.33  Aligned_cols=59  Identities=14%  Similarity=0.206  Sum_probs=39.0

Q ss_pred             HHHcCcEEEcCCeEEEEEeCC--CCcEEEEEcC--CCCE----EeC-CEEEEccCCccCCchhhhcCC
Q 012165          240 YQQNGVKFVKGASIKNLEAGS--DGRVAAVKLE--DGST----IDA-DTIVIGIGAKPTVSPFERVGL  298 (469)
Q Consensus       240 l~~~gV~~~~~~~v~~i~~~~--~~~v~~v~~~--~g~~----i~~-D~vi~a~G~~p~~~~~~~~gl  298 (469)
                      ..+.++++++++.|+++.-++  +.++.+|+..  ++..    +.+ ..||+|.|..-...+|..+||
T Consensus       204 a~~~nl~i~~~~~V~rv~~~~~~g~~a~gV~~~~~~g~~~~~~v~a~~eVILsAGaI~TP~LLl~SGI  271 (351)
T d1ju2a1         204 GNSNNLRVGVHASVEKIIFSNAPGLTATGVIYRDSNGTPHQAFVRSKGEVIVSAGTIGTPQLLLLSGV  271 (351)
T ss_dssp             SCTTTEEEEESCEEEEEEECCSSSCBEEEEEEECTTSCEEEEEEEEEEEEEECCHHHHHHHHHHHTTE
T ss_pred             chhhhhhhhccchhhceeeeccccceeeEEEEEeCCCceEEEEeecCcEEEEeCccccCHHHHHHcCC
Confidence            356899999999999987542  2367777764  3432    334 359999997654456655554

>d1qyca_ c.2.1.2 (A:) Phenylcoumaran benzylic ether reductase {Loblolly pine (Pinus taeda) [TaxId: 3352]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Phenylcoumaran benzylic ether reductase
species: Loblolly pine (Pinus taeda) [TaxId: 3352]

Probab=85.67  E-value=0.4  Score=41.68  Aligned_cols=36  Identities=14%  Similarity=0.327  Sum_probs=31.7

Q ss_pred             CCCcEEEEcC-cHHHHHHHHHHHHcCCCCCcEEEEcCCCC
Q 012165           50 ENREFVIVGG-GNAAGYAARTFVEHGMADGRLCIVSKEAY   88 (469)
Q Consensus        50 ~~~~vvIIGg-G~AGl~aA~~L~~~g~~~~~V~vie~~~~   88 (469)
                      ++++|+|+|| |+-|-..+..|.+.|+   +|+.+++.+.
T Consensus         2 ~kkKILVtGatG~iG~~l~~~L~~~G~---~V~~l~R~~~   38 (307)
T d1qyca_           2 SRSRILLIGATGYIGRHVAKASLDLGH---PTFLLVREST   38 (307)
T ss_dssp             CCCCEEEESTTSTTHHHHHHHHHHTTC---CEEEECCCCC
T ss_pred             CCCEEEEECCCcHHHHHHHHHHHHCCC---eEEEEECCCc
Confidence            4688999998 9999999999999998   7999987654

>d1kifa1 c.4.1.2 (A:1-194,A:288-339) D-aminoacid oxidase, N-terminal domain {Pig (Sus scrofa) [TaxId: 9823]}

class: Alpha and beta proteins (a/b)
fold: Nucleotide-binding domain
superfamily: Nucleotide-binding domain
family: D-aminoacid oxidase, N-terminal domain
domain: D-aminoacid oxidase, N-terminal domain
species: Pig (Sus scrofa) [TaxId: 9823]

Probab=85.65  E-value=0.14  Score=43.48  Aligned_cols=26  Identities=31%  Similarity=0.436  Sum_probs=23.4

Q ss_pred             eEEEEcCChHHHHHHHHHHhCCCeEe
Q 012165          209 KVVVVGGGYIGMEVAAAAVGWKLDTT  234 (469)
Q Consensus       209 ~vvVvG~G~~g~e~A~~l~~~g~~v~  234 (469)
                      +|+|||+|.+|+-.|..|++.|.+++
T Consensus         2 kV~VIGaGi~GlstA~~L~~~G~~v~   27 (246)
T d1kifa1           2 RVVVIGAGVIGLSTALCIHERYHSVL   27 (246)
T ss_dssp             EEEEECCSHHHHHHHHHHHHHHTTTS
T ss_pred             EEEEECchHHHHHHHHHHHHCCCCce
Confidence            69999999999999999999887654

>d1vl6a1 c.2.1.7 (A:155-376) Malate oxidoreductase (malic enzyme) {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Aminoacid dehydrogenase-like, C-terminal domain
domain: Malate oxidoreductase (malic enzyme)
species: Thermotoga maritima [TaxId: 2336]

Probab=85.19  E-value=0.52  Score=39.36  Aligned_cols=38  Identities=18%  Similarity=0.288  Sum_probs=32.5

Q ss_pred             CCCCCcEEEEcCcHHHHHHHHHHHHcCCCCCcEEEEcCCC
Q 012165           48 ANENREFVIVGGGNAAGYAARTFVEHGMADGRLCIVSKEA   87 (469)
Q Consensus        48 ~~~~~~vvIIGgG~AGl~aA~~L~~~g~~~~~V~vie~~~   87 (469)
                      .....+||+.|+|.||+..|..|.+.+.+  ++.++|+..
T Consensus        23 ~l~d~riv~~GAGsAg~gia~~l~~~~~~--~i~~~D~~G   60 (222)
T d1vl6a1          23 KIEEVKVVVNGIGAAGYNIVKFLLDLGVK--NVVAVDRKG   60 (222)
T ss_dssp             CTTTCEEEEECCSHHHHHHHHHHHHHTCC--EEEEEETTE
T ss_pred             ChhhcEEEEEChHHHHHHHHHHHHHhccc--ceEeeccee
Confidence            34567899999999999999999999864  899998764

>d1piwa2 c.2.1.1 (A:153-320) Cinnamyl alcohol dehydrogenase, ADH6 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Cinnamyl alcohol dehydrogenase, ADH6
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=85.06  E-value=0.49  Score=37.66  Aligned_cols=35  Identities=17%  Similarity=0.254  Sum_probs=29.0

Q ss_pred             CCCcEEEEcCcHHHHHHHHHHHHcCCCCCcEEEEcCCC
Q 012165           50 ENREFVIVGGGNAAGYAARTFVEHGMADGRLCIVSKEA   87 (469)
Q Consensus        50 ~~~~vvIIGgG~AGl~aA~~L~~~g~~~~~V~vie~~~   87 (469)
                      ...+|+|+|+|+-|+.++..++..|.   +|.+++..+
T Consensus        27 ~g~~vlI~GaG~vG~~a~q~ak~~G~---~vi~~~~~~   61 (168)
T d1piwa2          27 PGKKVGIVGLGGIGSMGTLISKAMGA---ETYVISRSS   61 (168)
T ss_dssp             TTCEEEEECCSHHHHHHHHHHHHHTC---EEEEEESSS
T ss_pred             CCCEEEEECCCCcchhHHHHhhhccc---cccccccch
Confidence            34689999999999999998888876   788888654

>d1jqba2 c.2.1.1 (A:1140-1313) Bacterial secondary alcohol dehydrogenase {Clostridium beijerinckii [TaxId: 1520]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Bacterial secondary alcohol dehydrogenase
species: Clostridium beijerinckii [TaxId: 1520]

Probab=84.98  E-value=0.58  Score=37.56  Aligned_cols=36  Identities=17%  Similarity=0.161  Sum_probs=29.6

Q ss_pred             CCCcEEEEcCcHHHHHHHHHHHHcCCCCCcEEEEcCCC
Q 012165           50 ENREFVIVGGGNAAGYAARTFVEHGMADGRLCIVSKEA   87 (469)
Q Consensus        50 ~~~~vvIIGgG~AGl~aA~~L~~~g~~~~~V~vie~~~   87 (469)
                      ....|+|+|+|+-|+.++..++..|..  +|+++|..+
T Consensus        27 ~g~~VlI~GaG~vGl~~~q~ak~~Ga~--~Vi~~d~~~   62 (174)
T d1jqba2          27 MGSSVVVIGIGAVGLMGIAGAKLRGAG--RIIGVGSRP   62 (174)
T ss_dssp             TTCCEEEECCSHHHHHHHHHHHTTTCS--CEEEECCCH
T ss_pred             CCCEEEEEcCCcchhhhhhhhhccccc--ccccccchh
Confidence            345799999999999999999888753  688888654

>d1f0ya2 c.2.1.6 (A:12-203) Short chain L-3-hydroxyacyl CoA dehydrogenase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: 6-phosphogluconate dehydrogenase-like, N-terminal domain
domain: Short chain L-3-hydroxyacyl CoA dehydrogenase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=84.95  E-value=0.4  Score=39.29  Aligned_cols=27  Identities=33%  Similarity=0.532  Sum_probs=26.1

Q ss_pred             CeEEEEcCChHHHHHHHHHHhCCCeEe
Q 012165          208 KKVVVVGGGYIGMEVAAAAVGWKLDTT  234 (469)
Q Consensus       208 ~~vvVvG~G~~g~e~A~~l~~~g~~v~  234 (469)
                      ++|.|||+|.+|..+|..++..|.+|.
T Consensus         5 kkvaViGaG~mG~~iA~~~a~~G~~V~   31 (192)
T d1f0ya2           5 KHVTVIGGGLMGAGIAQVAAATGHTVV   31 (192)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHTTCEEE
T ss_pred             EEEEEECcCHHHHHHHHHHHhCCCcEE
Confidence            799999999999999999999999998

>d1llua2 c.2.1.1 (A:144-309) Alcohol dehydrogenase {Pseudomonas aeruginosa [TaxId: 287]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Alcohol dehydrogenase
species: Pseudomonas aeruginosa [TaxId: 287]

Probab=84.58  E-value=0.46  Score=37.70  Aligned_cols=35  Identities=14%  Similarity=0.174  Sum_probs=29.1

Q ss_pred             CCCcEEEEcCcHHHHHHHHHHHHcCCCCCcEEEEcCCC
Q 012165           50 ENREFVIVGGGNAAGYAARTFVEHGMADGRLCIVSKEA   87 (469)
Q Consensus        50 ~~~~vvIIGgG~AGl~aA~~L~~~g~~~~~V~vie~~~   87 (469)
                      ...+|+|+|+|+.|+.++.-++..|.   +|..++..+
T Consensus        27 ~g~~VlV~GaG~vG~~~~~~ak~~G~---~Vi~~~~~~   61 (166)
T d1llua2          27 PGQWVAISGIGGLGHVAVQYARAMGL---HVAAIDIDD   61 (166)
T ss_dssp             TTCEEEEECCSHHHHHHHHHHHHTTC---EEEEEESCH
T ss_pred             CCCEEEEeeccccHHHHHHHHHHcCC---ccceecchh
Confidence            34679999999999999998888875   788887654

>d1mo9a3 d.87.1.1 (A:384-523) NADH-dependent 2-ketopropyl coenzyme M oxidoreductase/carboxylase {Xanthobacter sp., py2 [TaxId: 35809]}

class: Alpha and beta proteins (a+b)
fold: CO dehydrogenase flavoprotein C-domain-like
superfamily: FAD/NAD-linked reductases, dimerisation (C-terminal) domain
family: FAD/NAD-linked reductases, dimerisation (C-terminal) domain
domain: NADH-dependent 2-ketopropyl coenzyme M oxidoreductase/carboxylase
species: Xanthobacter sp., py2 [TaxId: 35809]

Probab=84.36  E-value=0.65  Score=35.76  Aligned_cols=54  Identities=17%  Similarity=0.079  Sum_probs=38.7

Q ss_pred             cEEEEEEe--CCEEEEEEeecCChHHhHHH-HHHHhCCCCCCh-hh---hcCCCcHHHHHH
Q 012165          404 KIATFWID--SGKLKGVLVESGSPEEFQLL-PTLARSQPFVDK-AK---LQQASSVEEALE  457 (469)
Q Consensus       404 ~~~~~~~~--~~~l~g~~~~~~~~~~~~~~-~~~~~~~~~~~~-~~---~~~~~~~~~~~~  457 (469)
                      .+.|++++  +++|+|+++++++++++... ..+|+.+.+++. ..   ...|||..|.|.
T Consensus        68 G~vKlv~d~~t~~IlGa~ivG~~A~ElI~~~~~ai~~~~t~~dl~~~~~i~~hPT~~~~l~  128 (140)
T d1mo9a3          68 GFQKIVIDAKTRKVLGAHHVGYGAKDAFQYLNVLIKQGLTVDELGDMDELFLNPTHFIQLS  128 (140)
T ss_dssp             CEEEEEEETTTCBEEEEEEEESSCHHHHHHHHHHHHTTCBHHHHHTSCCCSSCSCCHHHHH
T ss_pred             ceEEEEEecCCCcEEEEEEECCCHHHHHHHHHHHHHcCCCHHHHHhcCCCCCCCChHHHHH
Confidence            36777774  59999999988888776655 455788887763 33   356789887663

>d1lqta1 c.3.1.1 (A:109-324) Ferredoxin:NADP reductase FprA {Mycobacterium tuberculosis [TaxId: 1773]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: C-terminal domain of adrenodoxin reductase-like
domain: Ferredoxin:NADP reductase FprA
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=84.28  E-value=0.65  Score=38.71  Aligned_cols=23  Identities=30%  Similarity=0.404  Sum_probs=20.4

Q ss_pred             CCCCcEEEEcCcHHHHHHHHHHH
Q 012165           49 NENREFVIVGGGNAAGYAARTFV   71 (469)
Q Consensus        49 ~~~~~vvIIGgG~AGl~aA~~L~   71 (469)
                      ...++|+|||+|-.++=+|+.|.
T Consensus        37 ~~gk~VvVIGgGNvAlD~AR~ll   59 (216)
T d1lqta1          37 LSGARAVVIGNGNVALDVARILL   59 (216)
T ss_dssp             CCSSEEEEECCSHHHHHHHHHHH
T ss_pred             ccCceEEEECCCchhHhhhhhhc
Confidence            34589999999999999999887

>d1qyda_ c.2.1.2 (A:) Pinoresinol-lariciresinol reductase {Giant arborvitae (Thuja plicata) [TaxId: 3316]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Pinoresinol-lariciresinol reductase
species: Giant arborvitae (Thuja plicata) [TaxId: 3316]

Probab=84.04  E-value=0.54  Score=41.09  Aligned_cols=34  Identities=18%  Similarity=0.307  Sum_probs=29.5

Q ss_pred             CCcEEEEcC-cHHHHHHHHHHHHcCCCCCcEEEEcCCC
Q 012165           51 NREFVIVGG-GNAAGYAARTFVEHGMADGRLCIVSKEA   87 (469)
Q Consensus        51 ~~~vvIIGg-G~AGl~aA~~L~~~g~~~~~V~vie~~~   87 (469)
                      +.+|+|+|| |+-|...+.+|.++|+   +|+++.+.+
T Consensus         3 k~KILVtGatG~iG~~l~~~L~~~G~---~V~~~~R~~   37 (312)
T d1qyda_           3 KSRVLIVGGTGYIGKRIVNASISLGH---PTYVLFRPE   37 (312)
T ss_dssp             CCCEEEESTTSTTHHHHHHHHHHTTC---CEEEECCSC
T ss_pred             CCEEEEECCCCHHHHHHHHHHHhCCC---EEEEEECCC
Confidence            467999997 9999999999999998   798887653

>d1l7da1 c.2.1.4 (A:144-326) Nicotinamide nucleotide transhydrogenase dI component {Rhodospirillum rubrum [TaxId: 1085]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Formate/glycerate dehydrogenases, NAD-domain
domain: Nicotinamide nucleotide transhydrogenase dI component
species: Rhodospirillum rubrum [TaxId: 1085]

Probab=83.90  E-value=0.83  Score=36.76  Aligned_cols=44  Identities=23%  Similarity=0.294  Sum_probs=37.2

Q ss_pred             cCCeEEEEcCChHHHHHHHHHHhCCCeEe------eeHHHHHHcCcEEEc
Q 012165          206 KAKKVVVVGGGYIGMEVAAAAVGWKLDTT------RYEQLYQQNGVKFVK  249 (469)
Q Consensus       206 ~~~~vvVvG~G~~g~e~A~~l~~~g~~v~------~~~~~l~~~gV~~~~  249 (469)
                      ++.+|+|+|+|..|...+....++|.+|+      ...+.+++.+-+++.
T Consensus        28 ~pa~VvViGaGvaG~~Aa~~A~~lGA~V~v~D~~~~~~~~l~~l~~~~i~   77 (183)
T d1l7da1          28 PPARVLVFGVGVAGLQAIATAKRLGAVVMATDVRAATKEQVESLGGKFIT   77 (183)
T ss_dssp             CCCEEEEECCSHHHHHHHHHHHHTTCEEEEECSCSTTHHHHHHTTCEECC
T ss_pred             CCcEEEEEcCcHHHHHHHHHHHHcCCEEEEEeccHHHHHHHHHhhcceEE
Confidence            46799999999999999999999999998      335778888777653

>d1e3ja2 c.2.1.1 (A:143-312) Ketose reductase (sorbitol dehydrogenase) {Silverleaf whitefly (Bemisia argentifolii) [TaxId: 77855]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Ketose reductase (sorbitol dehydrogenase)
species: Silverleaf whitefly (Bemisia argentifolii) [TaxId: 77855]

Probab=83.78  E-value=0.52  Score=37.51  Aligned_cols=34  Identities=9%  Similarity=0.162  Sum_probs=28.8

Q ss_pred             CCcEEEEcCcHHHHHHHHHHHHcCCCCCcEEEEcCCC
Q 012165           51 NREFVIVGGGNAAGYAARTFVEHGMADGRLCIVSKEA   87 (469)
Q Consensus        51 ~~~vvIIGgG~AGl~aA~~L~~~g~~~~~V~vie~~~   87 (469)
                      ..+|+|+|+|+-|+.++..++..|.   +|+++|..+
T Consensus        27 g~~vlV~G~G~vG~~~~~~ak~~Ga---~vi~v~~~~   60 (170)
T d1e3ja2          27 GTTVLVIGAGPIGLVSVLAAKAYGA---FVVCTARSP   60 (170)
T ss_dssp             TCEEEEECCSHHHHHHHHHHHHTTC---EEEEEESCH
T ss_pred             CCEEEEEcccccchhhHhhHhhhcc---cccccchHH
Confidence            3579999999999999998888875   799988654

>d1ks9a2 c.2.1.6 (A:1-167) Ketopantoate reductase PanE {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: 6-phosphogluconate dehydrogenase-like, N-terminal domain
domain: Ketopantoate reductase PanE
species: Escherichia coli [TaxId: 562]

Probab=83.34  E-value=0.5  Score=37.26  Aligned_cols=28  Identities=21%  Similarity=0.277  Sum_probs=25.9

Q ss_pred             eEEEEcCChHHHHHHHHHHhCCCeEeee
Q 012165          209 KVVVVGGGYIGMEVAAAAVGWKLDTTRY  236 (469)
Q Consensus       209 ~vvVvG~G~~g~e~A~~l~~~g~~v~~~  236 (469)
                      +|+|+|+|.+|.-+|..|++.|.+|+.+
T Consensus         2 kI~IiGaG~iG~~~a~~L~~~G~~V~~~   29 (167)
T d1ks9a2           2 KITVLGCGALGQLWLTALCKQGHEVQGW   29 (167)
T ss_dssp             EEEEECCSHHHHHHHHHHHHTTCEEEEE
T ss_pred             EEEEECcCHHHHHHHHHHHHCCCceEEE
Confidence            6999999999999999999999999844

>d1nhpa3 d.87.1.1 (A:322-447) NADH peroxidase {Enterococcus faecalis [TaxId: 1351]}

class: Alpha and beta proteins (a+b)
fold: CO dehydrogenase flavoprotein C-domain-like
superfamily: FAD/NAD-linked reductases, dimerisation (C-terminal) domain
family: FAD/NAD-linked reductases, dimerisation (C-terminal) domain
domain: NADH peroxidase
species: Enterococcus faecalis [TaxId: 1351]

Probab=83.31  E-value=0.13  Score=39.14  Aligned_cols=59  Identities=7%  Similarity=0.066  Sum_probs=38.2

Q ss_pred             EEEEEEe--CCEEEEEEeecCC-hHH-hHHHHHHHhCCCCCChh-hh--cCCCcHHHH---HHHHHhcC
Q 012165          405 IATFWID--SGKLKGVLVESGS-PEE-FQLLPTLARSQPFVDKA-KL--QQASSVEEA---LEIARAAL  463 (469)
Q Consensus       405 ~~~~~~~--~~~l~g~~~~~~~-~~~-~~~~~~~~~~~~~~~~~-~~--~~~~~~~~~---~~~~~~~~  463 (469)
                      +.|+.++  +++|+|+++++.+ +.+ +..+..+|+.+.+++.- .+  ..+|++.|+   +..|+..+
T Consensus        53 ~~Kli~d~~t~~IlG~~ivG~~~a~e~I~~~~~ai~~~~t~~dL~~~~~~yhPt~se~~~~l~~aA~~a  121 (126)
T d1nhpa3          53 WFKLVYDPETTQILGAQLMSKADLTANINAISLAIQAKMTIEDLAYADFFFQPAFDKPWNIINTAALEA  121 (126)
T ss_dssp             EEEEEECTTTCBEEEEEEEESSCCTTHHHHHHHHHHTTCBHHHHHTCCCCCCTTTCCSSCHHHHHHHHH
T ss_pred             eEEEEEECCCCCEEEEEEEechhHHHHHHHHHHHHHcCCCHHHHhcCcccCCCCCchhHHHHHHHHHHH
Confidence            5666664  4899999987644 655 44555568888877633 33  346888885   55555443

>d2cmda1 c.2.1.5 (A:1-145) Malate dehydrogenase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: LDH N-terminal domain-like
domain: Malate dehydrogenase
species: Escherichia coli [TaxId: 562]

Probab=83.23  E-value=0.69  Score=35.90  Aligned_cols=33  Identities=12%  Similarity=0.185  Sum_probs=26.1

Q ss_pred             cEEEEc-CcHHHHHHHHHHHHc-CCCCCcEEEEcCC
Q 012165           53 EFVIVG-GGNAAGYAARTFVEH-GMADGRLCIVSKE   86 (469)
Q Consensus        53 ~vvIIG-gG~AGl~aA~~L~~~-g~~~~~V~vie~~   86 (469)
                      +|.||| +|.-|.++|..|..+ +. -.++.++|.+
T Consensus         2 KV~IiGaaG~VG~~~a~~l~~~~~~-~~el~L~D~~   36 (145)
T d2cmda1           2 KVAVLGAAGGIGQALALLLKTQLPS-GSELSLYDIA   36 (145)
T ss_dssp             EEEEETTTSHHHHHHHHHHHHHSCT-TCEEEEECSS
T ss_pred             EEEEEcCCChHHHHHHHHHHhCCCC-CcEEEEeccc
Confidence            699999 599999999988654 54 4589998843

>d2g5ca2 c.2.1.6 (A:30-200) Prephenate dehydrogenase TyrA {Aquifex aeolicus [TaxId: 63363]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: 6-phosphogluconate dehydrogenase-like, N-terminal domain
domain: Prephenate dehydrogenase TyrA
species: Aquifex aeolicus [TaxId: 63363]

Probab=83.19  E-value=0.065  Score=43.29  Aligned_cols=25  Identities=24%  Similarity=0.426  Sum_probs=22.4

Q ss_pred             CeEEEEcCChHHHHHHHHHHhCCCe
Q 012165          208 KKVVVVGGGYIGMEVAAAAVGWKLD  232 (469)
Q Consensus       208 ~~vvVvG~G~~g~e~A~~l~~~g~~  232 (469)
                      ++|.|||.|.+|.-+|..|.+.|..
T Consensus         2 k~I~IIG~G~mG~sla~~L~~~g~~   26 (171)
T d2g5ca2           2 QNVLIVGVGFMGGSFAKSLRRSGFK   26 (171)
T ss_dssp             CEEEEESCSHHHHHHHHHHHHTTCC
T ss_pred             CEEEEEccCHHHHHHHHHHHhcCCC
Confidence            4799999999999999999998854

>d1e3ia2 c.2.1.1 (A:168-341) Alcohol dehydrogenase {Mouse (Mus musculus), class II [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Alcohol dehydrogenase
species: Mouse (Mus musculus), class II [TaxId: 10090]

Probab=83.17  E-value=0.74  Score=36.91  Aligned_cols=36  Identities=14%  Similarity=0.104  Sum_probs=29.2

Q ss_pred             CCCcEEEEcCcHHHHHHHHHHHHcCCCCCcEEEEcCCC
Q 012165           50 ENREFVIVGGGNAAGYAARTFVEHGMADGRLCIVSKEA   87 (469)
Q Consensus        50 ~~~~vvIIGgG~AGl~aA~~L~~~g~~~~~V~vie~~~   87 (469)
                      ....|+|+|+|+-|+.++..++..|..  .|++.|..+
T Consensus        28 ~G~~VlV~G~G~iGl~a~~~ak~~Ga~--~Vi~~d~~~   63 (174)
T d1e3ia2          28 PGSTCAVFGLGCVGLSAIIGCKIAGAS--RIIAIDING   63 (174)
T ss_dssp             TTCEEEEECCSHHHHHHHHHHHHTTCS--EEEEECSCG
T ss_pred             CCCEEEEECCChHHHHHHHHHHHhCCc--eeeeeccch
Confidence            346899999999999999999998852  677777554

>d1p77a1 c.2.1.7 (A:102-272) Shikimate 5-dehydrogenase AroE {Haemophilus influenzae [TaxId: 727]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Aminoacid dehydrogenase-like, C-terminal domain
domain: Shikimate 5-dehydrogenase AroE
species: Haemophilus influenzae [TaxId: 727]

Probab=82.67  E-value=0.49  Score=37.95  Aligned_cols=35  Identities=14%  Similarity=0.327  Sum_probs=28.8

Q ss_pred             CCCCcEEEEcCcHHHHHHHHHHHHcCCCCCcEEEEcCC
Q 012165           49 NENREFVIVGGGNAAGYAARTFVEHGMADGRLCIVSKE   86 (469)
Q Consensus        49 ~~~~~vvIIGgG~AGl~aA~~L~~~g~~~~~V~vie~~   86 (469)
                      ...++|+|+|+|-++-+++..|.+.+   .+|+|+.+.
T Consensus        16 ~~~k~vlIlGaGGaarai~~aL~~~~---~~i~I~nR~   50 (171)
T d1p77a1          16 RPNQHVLILGAGGATKGVLLPLLQAQ---QNIVLANRT   50 (171)
T ss_dssp             CTTCEEEEECCSHHHHTTHHHHHHTT---CEEEEEESS
T ss_pred             CCCCEEEEECCcHHHHHHHHHHcccC---ceeeeccch
Confidence            45678999999999999999998754   389998755

>d1wdka3 c.2.1.6 (A:311-496) Fatty oxidation complex alpha subunit, middle domain {Pseudomonas fragi [TaxId: 296]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: 6-phosphogluconate dehydrogenase-like, N-terminal domain
domain: Fatty oxidation complex alpha subunit, middle domain
species: Pseudomonas fragi [TaxId: 296]

Probab=82.52  E-value=0.43  Score=38.90  Aligned_cols=29  Identities=21%  Similarity=0.286  Sum_probs=26.8

Q ss_pred             cCCeEEEEcCChHHHHHHHHHHhCCCeEe
Q 012165          206 KAKKVVVVGGGYIGMEVAAAAVGWKLDTT  234 (469)
Q Consensus       206 ~~~~vvVvG~G~~g~e~A~~l~~~g~~v~  234 (469)
                      .-++|.|||+|.+|..+|..++..|.+|+
T Consensus         3 ~I~~vaViGaG~mG~~iA~~~a~~G~~V~   31 (186)
T d1wdka3           3 DVKQAAVLGAGIMGGGIAYQSASKGTPIL   31 (186)
T ss_dssp             CCSSEEEECCHHHHHHHHHHHHHTTCCEE
T ss_pred             CCCEEEEECcCHHHHHHHHHHHhCCCeEE
Confidence            35789999999999999999999999998

>d1vj0a2 c.2.1.1 (A:156-337) Hypothetical protein TM0436 {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Hypothetical protein TM0436
species: Thermotoga maritima [TaxId: 2336]

Probab=82.46  E-value=0.61  Score=37.61  Aligned_cols=35  Identities=14%  Similarity=0.263  Sum_probs=29.5

Q ss_pred             CCcEEEEcCcHHHHHHHHHHHHcCCCCCcEEEEcCCC
Q 012165           51 NREFVIVGGGNAAGYAARTFVEHGMADGRLCIVSKEA   87 (469)
Q Consensus        51 ~~~vvIIGgG~AGl~aA~~L~~~g~~~~~V~vie~~~   87 (469)
                      ..+|+|+|+|+-|+.++..++..|..  +|++++.++
T Consensus        29 G~~VlV~GaG~iG~~~~~~ak~~Ga~--~Vi~~~~~~   63 (182)
T d1vj0a2          29 GKTVVIQGAGPLGLFGVVIARSLGAE--NVIVIAGSP   63 (182)
T ss_dssp             TCEEEEECCSHHHHHHHHHHHHTTBS--EEEEEESCH
T ss_pred             CCEEEEECCCccchhheecccccccc--ccccccccc
Confidence            46899999999999999999888852  688888754

>d2v5za1 c.3.1.2 (A:6-289,A:402-500) Monoamine oxidase B {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD-linked reductases, N-terminal domain
domain: Monoamine oxidase B
species: Human (Homo sapiens) [TaxId: 9606]

Probab=82.22  E-value=0.83  Score=40.52  Aligned_cols=43  Identities=19%  Similarity=0.140  Sum_probs=36.6

Q ss_pred             HHHCCcEEEeCCcEEEEeCCCc--EEEeCCCeEEEeccEEeccCC
Q 012165          130 YKEKGIEMIYQDPVTSIDIEKQ--TLITNSGKLLKYGSLIVATGC  172 (469)
Q Consensus       130 ~~~~~i~~~~~~~v~~id~~~~--~v~~~~g~~~~yd~lVlAtG~  172 (469)
                      .++.+.+++++++|..|+.++.  .|++.+|+++++|++|+|+..
T Consensus       217 ~~~~g~~i~~~~~v~~I~~~~~~v~v~~~~g~~~~ad~vI~a~p~  261 (383)
T d2v5za1         217 MDLLGDRVKLERPVIYIDQTRENVLVETLNHEMYEAKYVISAIPP  261 (383)
T ss_dssp             HHHHGGGEEESCCEEEEECSSSSEEEEETTSCEEEESEEEECSCG
T ss_pred             HHHcCCeEEecCcceEEEecCCeEEEEECCCCEEECCEEEECCCH
Confidence            4566889999999999987665  678899999999999999864

>d1cjca1 c.3.1.1 (A:107-331) Adrenodoxin reductase of mitochondrial p450 systems {Cow (Bos taurus) [TaxId: 9913]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: C-terminal domain of adrenodoxin reductase-like
domain: Adrenodoxin reductase of mitochondrial p450 systems
species: Cow (Bos taurus) [TaxId: 9913]

Probab=81.91  E-value=0.73  Score=38.68  Aligned_cols=25  Identities=32%  Similarity=0.300  Sum_probs=22.1

Q ss_pred             CCCCcEEEEcCcHHHHHHHHHHHHc
Q 012165           49 NENREFVIVGGGNAAGYAARTFVEH   73 (469)
Q Consensus        49 ~~~~~vvIIGgG~AGl~aA~~L~~~   73 (469)
                      ...++|+|||+|-.++=+|+.|.+.
T Consensus        37 ~~gk~VvVIGgGNVAlD~aR~l~r~   61 (225)
T d1cjca1          37 LSCDTAVILGQGNVALDVARILLTP   61 (225)
T ss_dssp             TTSSEEEEESCSHHHHHHHHHHHSC
T ss_pred             ccCceEEEECCchhHHHHHHHHhcC
Confidence            3468999999999999999999884

>d1jaya_ c.2.1.6 (A:) Coenzyme F420H2:NADP+ oxidoreductase (FNO) {Archaeon Archaeoglobus fulgidus [TaxId: 2234]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: 6-phosphogluconate dehydrogenase-like, N-terminal domain
domain: Coenzyme F420H2:NADP+ oxidoreductase (FNO)
species: Archaeon Archaeoglobus fulgidus [TaxId: 2234]

Probab=81.59  E-value=0.48  Score=38.27  Aligned_cols=32  Identities=19%  Similarity=0.291  Sum_probs=28.1

Q ss_pred             cEEEE-cCcHHHHHHHHHHHHcCCCCCcEEEEcCCC
Q 012165           53 EFVIV-GGGNAAGYAARTFVEHGMADGRLCIVSKEA   87 (469)
Q Consensus        53 ~vvII-GgG~AGl~aA~~L~~~g~~~~~V~vie~~~   87 (469)
                      +|.|| |+|.-|.+.|..|++.|+   +|++.++++
T Consensus         2 ki~vigGaG~iG~alA~~la~~G~---~V~l~~R~~   34 (212)
T d1jaya_           2 RVALLGGTGNLGKGLALRLATLGH---EIVVGSRRE   34 (212)
T ss_dssp             EEEEETTTSHHHHHHHHHHHTTTC---EEEEEESSH
T ss_pred             EEEEEeCCcHHHHHHHHHHHHCCC---EEEEEECCH
Confidence            48999 669999999999999998   799998764

>d1p3da1 c.5.1.1 (A:11-106) UDP-N-acetylmuramate-alanine ligase MurC {Haemophilus influenzae [TaxId: 727]}

class: Alpha and beta proteins (a/b)
fold: MurCD N-terminal domain
superfamily: MurCD N-terminal domain
family: MurCD N-terminal domain
domain: UDP-N-acetylmuramate-alanine ligase MurC
species: Haemophilus influenzae [TaxId: 727]

Probab=81.55  E-value=0.83  Score=32.57  Aligned_cols=37  Identities=14%  Similarity=0.170  Sum_probs=30.9

Q ss_pred             cCCCCCCcEEEEcCcHHHHHH-HHHHHHcCCCCCcEEEEcC
Q 012165           46 SFANENREFVIVGGGNAAGYA-ARTFVEHGMADGRLCIVSK   85 (469)
Q Consensus        46 ~~~~~~~~vvIIGgG~AGl~a-A~~L~~~g~~~~~V~vie~   85 (469)
                      |++...++|-+||-|=+|+++ |..|.++|+   +|+--|.
T Consensus         3 ~~~~~~~~ihfiGigG~GMs~LA~~L~~~G~---~VsGSD~   40 (96)
T d1p3da1           3 PEMRRVQQIHFIGIGGAGMSGIAEILLNEGY---QISGSDI   40 (96)
T ss_dssp             CCCTTCCEEEEETTTSTTHHHHHHHHHHHTC---EEEEEES
T ss_pred             ccchhCCEEEEEEECHHHHHHHHHHHHhCCC---EEEEEeC
Confidence            556677899999999999998 899999998   6877653

>d1xhca3 d.87.1.1 (A:290-351) NADH oxidase /nitrite reductase {Pyrococcus furiosus [TaxId: 2261]}

class: Alpha and beta proteins (a+b)
fold: CO dehydrogenase flavoprotein C-domain-like
superfamily: FAD/NAD-linked reductases, dimerisation (C-terminal) domain
family: FAD/NAD-linked reductases, dimerisation (C-terminal) domain
domain: NADH oxidase /nitrite reductase
species: Pyrococcus furiosus [TaxId: 2261]

Probab=81.48  E-value=1.3  Score=27.62  Aligned_cols=23  Identities=17%  Similarity=0.356  Sum_probs=12.5

Q ss_pred             EEEEEeCCEEEEEEeecCChHHhH
Q 012165          406 ATFWIDSGKLKGVLVESGSPEEFQ  429 (469)
Q Consensus       406 ~~~~~~~~~l~g~~~~~~~~~~~~  429 (469)
                      .+.++++++++|+++ .++.+...
T Consensus        37 tK~Fy~d~KiiGaVV-~~DirkA~   59 (62)
T d1xhca3          37 TKVFYENGKIIGAVV-FNDIRKAT   59 (62)
T ss_dssp             EEEEC-----CEEEE-ESCHHHHH
T ss_pred             ceeeeeCCcEEEEEE-ehhhhhhh
Confidence            467778999999996 67765443

>d1pn0a1 c.3.1.2 (A:1-240,A:342-461) Phenol hydroxylase {Soil-living yeast (Trichosporon cutaneum) [TaxId: 5554]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD-linked reductases, N-terminal domain
domain: Phenol hydroxylase
species: Soil-living yeast (Trichosporon cutaneum) [TaxId: 5554]

Probab=81.36  E-value=0.59  Score=41.73  Aligned_cols=27  Identities=26%  Similarity=0.311  Sum_probs=23.6

Q ss_pred             CeEEEEcCChHHHHHHHHHH-----hCCCeEe
Q 012165          208 KKVVVVGGGYIGMEVAAAAV-----GWKLDTT  234 (469)
Q Consensus       208 ~~vvVvG~G~~g~e~A~~l~-----~~g~~v~  234 (469)
                      -.|+|||||++|+-+|..|+     +.|.+|+
T Consensus         8 yDV~IvGaG~aGl~lA~~La~~~~~~~G~~v~   39 (360)
T d1pn0a1           8 CDVLIVGAGPAGLMAARVLSEYVRQKPDLKVR   39 (360)
T ss_dssp             EEEEEECCSHHHHHHHHHHHHHHHHSTTCCEE
T ss_pred             CCEEEECcCHHHHHHHHHHHhcccccCCCcEE
Confidence            36999999999999999996     5688887

>d3cuma2 c.2.1.6 (A:1-162) Hydroxyisobutyrate dehydrogenase {Pseudomonas aeruginosa [TaxId: 287]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: 6-phosphogluconate dehydrogenase-like, N-terminal domain
domain: Hydroxyisobutyrate dehydrogenase
species: Pseudomonas aeruginosa [TaxId: 287]

Probab=81.09  E-value=0.76  Score=36.28  Aligned_cols=33  Identities=15%  Similarity=0.273  Sum_probs=29.3

Q ss_pred             CCcEEEEcCcHHHHHHHHHHHHcCCCCCcEEEEcCC
Q 012165           51 NREFVIVGGGNAAGYAARTFVEHGMADGRLCIVSKE   86 (469)
Q Consensus        51 ~~~vvIIGgG~AGl~aA~~L~~~g~~~~~V~vie~~   86 (469)
                      |++|-+||-|.-|...|..|.++|+   +|.+.++.
T Consensus         1 M~kIg~IGlG~MG~~iA~~L~~~g~---~v~~~d~~   33 (162)
T d3cuma2           1 MKQIAFIGLGHMGAPMATNLLKAGY---LLNVFDLV   33 (162)
T ss_dssp             CCEEEEECCSTTHHHHHHHHHHTTC---EEEEECSS
T ss_pred             CCEEEEEEEHHHHHHHHHHHHHCCC---eEEEEECc
Confidence            4679999999999999999999998   78887754

>d3etja2 c.30.1.1 (A:1-78) N5-carboxyaminoimidazole ribonucleotide synthetase PurK (AIRC), N-domain {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: PreATP-grasp domain
superfamily: PreATP-grasp domain
family: BC N-terminal domain-like
domain: N5-carboxyaminoimidazole ribonucleotide synthetase PurK (AIRC), N-domain
species: Escherichia coli [TaxId: 562]

Probab=80.87  E-value=0.59  Score=31.91  Aligned_cols=27  Identities=26%  Similarity=0.353  Sum_probs=24.1

Q ss_pred             CeEEEEcCChHHHHHHHHHHhCCCeEe
Q 012165          208 KKVVVVGGGYIGMEVAAAAVGWKLDTT  234 (469)
Q Consensus       208 ~~vvVvG~G~~g~e~A~~l~~~g~~v~  234 (469)
                      |+|.|+|+|..|..++.+..++|.++.
T Consensus         2 k~vgIlG~GQLgrMl~~Aa~~LG~~v~   28 (78)
T d3etja2           2 KQVCVLGNGQLGRMLRQAGEPLGIAVW   28 (78)
T ss_dssp             EEEEEEBCSHHHHHHHHHHGGGTEEEE
T ss_pred             CEEEEEcCCHHHHHHHHHHHHcCCEEE
Confidence            579999999999999999988888775

>d1d1ta2 c.2.1.1 (A:163-338) Alcohol dehydrogenase {Human (Homo sapiens), different isozymes [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Alcohol dehydrogenase
species: Human (Homo sapiens), different isozymes [TaxId: 9606]

Probab=80.76  E-value=1  Score=36.08  Aligned_cols=36  Identities=14%  Similarity=0.118  Sum_probs=30.0

Q ss_pred             CCCcEEEEcCcHHHHHHHHHHHHcCCCCCcEEEEcCCC
Q 012165           50 ENREFVIVGGGNAAGYAARTFVEHGMADGRLCIVSKEA   87 (469)
Q Consensus        50 ~~~~vvIIGgG~AGl~aA~~L~~~g~~~~~V~vie~~~   87 (469)
                      ....|+|+|+|+-|+.++..++..|.  .+|.++|..+
T Consensus        29 ~g~tVlI~G~GgvGl~ai~~ak~~G~--~~Vi~vd~~~   64 (176)
T d1d1ta2          29 PGSTCVVFGLGGVGLSVIMGCKSAGA--SRIIGIDLNK   64 (176)
T ss_dssp             TTCEEEEECCSHHHHHHHHHHHHTTC--SEEEEECSCG
T ss_pred             CCCEEEEECCCchhHHHHHHHHHcCC--ceEEEecCcH
Confidence            34569999999999999999999885  3798988654

>d1uufa2 c.2.1.1 (A:145-312) Hypothetical protein YahK {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Hypothetical protein YahK
species: Escherichia coli [TaxId: 562]

Probab=80.62  E-value=0.91  Score=35.96  Aligned_cols=34  Identities=12%  Similarity=0.186  Sum_probs=27.2

Q ss_pred             CCCcEEEEcCcHHHHHHHHHHHHcCCCCCcEEEEcCC
Q 012165           50 ENREFVIVGGGNAAGYAARTFVEHGMADGRLCIVSKE   86 (469)
Q Consensus        50 ~~~~vvIIGgG~AGl~aA~~L~~~g~~~~~V~vie~~   86 (469)
                      ...+|+|+|+|+.|+.++..++..|.   ++.+++..
T Consensus        30 ~G~~VlI~GaG~vG~~a~qlak~~Ga---~~i~~~~~   63 (168)
T d1uufa2          30 PGKKVGVVGIGGLGHMGIKLAHAMGA---HVVAFTTS   63 (168)
T ss_dssp             TTCEEEEECCSHHHHHHHHHHHHTTC---EEEEEESS
T ss_pred             CCCEEEEeccchHHHHHHHHhhcccc---cchhhccc
Confidence            34689999999999999998888876   56666643

>d1kola2 c.2.1.1 (A:161-355) Formaldehyde dehydrogenase {Pseudomonas putida [TaxId: 303]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Formaldehyde dehydrogenase
species: Pseudomonas putida [TaxId: 303]

Probab=80.42  E-value=0.83  Score=37.38  Aligned_cols=35  Identities=14%  Similarity=0.093  Sum_probs=28.1

Q ss_pred             CCCcEEEEcCcHHHHHHHHHHHHcCCCCCcEEEEcCC
Q 012165           50 ENREFVIVGGGNAAGYAARTFVEHGMADGRLCIVSKE   86 (469)
Q Consensus        50 ~~~~vvIIGgG~AGl~aA~~L~~~g~~~~~V~vie~~   86 (469)
                      ...+|+|+|+|+-|+.++..++..|.  .+|.+++..
T Consensus        25 ~G~tVlV~GaG~vGl~a~~~ak~~ga--~~Vi~~d~~   59 (195)
T d1kola2          25 PGSTVYVAGAGPVGLAAAASARLLGA--AVVIVGDLN   59 (195)
T ss_dssp             TTCEEEEECCSHHHHHHHHHHHHTTC--SEEEEEESC
T ss_pred             CCCEEEEECcCHHHHHHHHHHHhhcc--cceeeeccc
Confidence            34689999999999999998888774  378787754

>d1y0pa2 c.3.1.4 (A:111-361,A:512-568) Flavocytochrome c3 (respiratory fumarate reductase) {Shewanella frigidimarina [TaxId: 56812]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: Succinate dehydrogenase/fumarate reductase flavoprotein N-terminal domain
domain: Flavocytochrome c3 (respiratory fumarate reductase)
species: Shewanella frigidimarina [TaxId: 56812]

Probab=80.23  E-value=0.59  Score=41.11  Aligned_cols=29  Identities=34%  Similarity=0.365  Sum_probs=26.2

Q ss_pred             eEEEEcCChHHHHHHHHHHhCCCeEeeeH
Q 012165          209 KVVVVGGGYIGMEVAAAAVGWKLDTTRYE  237 (469)
Q Consensus       209 ~vvVvG~G~~g~e~A~~l~~~g~~v~~~~  237 (469)
                      .|+|||+|..|+-.|..|++.|.+|..++
T Consensus        18 DVlVIG~G~aGl~aA~~la~~G~~V~lvE   46 (308)
T d1y0pa2          18 DVVVVGSGGAGFSAAISATDSGAKVILIE   46 (308)
T ss_dssp             SEEEECCSHHHHHHHHHHHHTTCCEEEEC
T ss_pred             CEEEECcCHHHHHHHHHHHHCCCcEEEEe
Confidence            69999999999999999999999987443

>d1dlja2 c.2.1.6 (A:1-196) UDP-glucose dehydrogenase (UDPGDH) {Streptococcus pyogenes [TaxId: 1314]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: 6-phosphogluconate dehydrogenase-like, N-terminal domain
domain: UDP-glucose dehydrogenase (UDPGDH)
species: Streptococcus pyogenes [TaxId: 1314]

Probab=80.11  E-value=0.64  Score=38.00  Aligned_cols=31  Identities=13%  Similarity=0.098  Sum_probs=26.5

Q ss_pred             cEEEEcCcHHHHHHHHHHHHcCCCCCcEEEEcCCC
Q 012165           53 EFVIVGGGNAAGYAARTFVEHGMADGRLCIVSKEA   87 (469)
Q Consensus        53 ~vvIIGgG~AGl~aA~~L~~~g~~~~~V~vie~~~   87 (469)
                      +|.|||.|.-|+..|..++ .|+   +|+.+|.++
T Consensus         2 kI~ViGlG~vGl~~a~~~a-~g~---~V~g~Din~   32 (196)
T d1dlja2           2 KIAVAGSGYVGLSLGVLLS-LQN---EVTIVDILP   32 (196)
T ss_dssp             EEEEECCSHHHHHHHHHHT-TTS---EEEEECSCH
T ss_pred             EEEEECCChhHHHHHHHHH-CCC---cEEEEECCH
Confidence            5899999999999998775 577   799998765