Citrus Sinensis ID: 012172
Local Sequence Feature Prediction
| Prediction and (Method) | Result |
|---|
Close Homologs for Annotation Transfer
Close Homologs in SWISS-PROT Database Detected by BLAST 
Original result of BLAST against SWISS-PROT Database
ID ![]() | Alignment graph ![]() | Length ![]() |
Definition ![]() |
RBH(Q2H) ![]() |
RBH(H2Q) ![]() |
Q cover ![]() |
H cover ![]() |
Identity ![]() |
E-value ![]() |
| Query | 469 | 2.2.26 [Sep-21-2011] | |||||||
| Q9SDX3 | 467 | UTP--glucose-1-phosphate | N/A | no | 0.987 | 0.991 | 0.853 | 0.0 | |
| P57751 | 470 | UTP--glucose-1-phosphate | yes | no | 0.997 | 0.995 | 0.863 | 0.0 | |
| P19595 | 477 | UTP--glucose-1-phosphate | N/A | no | 0.993 | 0.976 | 0.869 | 0.0 | |
| Q9M9P3 | 469 | Probable UTP--glucose-1-p | no | no | 1.0 | 1.0 | 0.848 | 0.0 | |
| Q9LKG7 | 471 | UTP--glucose-1-phosphate | N/A | no | 0.997 | 0.993 | 0.850 | 0.0 | |
| O64459 | 471 | UTP--glucose-1-phosphate | N/A | no | 0.980 | 0.976 | 0.872 | 0.0 | |
| Q43772 | 473 | UTP--glucose-1-phosphate | N/A | no | 0.987 | 0.978 | 0.829 | 0.0 | |
| P32861 | 499 | UTP--glucose-1-phosphate | yes | no | 0.933 | 0.877 | 0.567 | 1e-140 | |
| O35156 | 508 | UTP--glucose-1-phosphate | yes | no | 0.957 | 0.883 | 0.538 | 1e-139 | |
| Q91ZJ5 | 508 | UTP--glucose-1-phosphate | yes | no | 0.957 | 0.883 | 0.540 | 1e-139 |
| >sp|Q9SDX3|UGPA_MUSAC UTP--glucose-1-phosphate uridylyltransferase OS=Musa acuminata GN=UGPA PE=2 SV=1 | Back alignment and function desciption |
|---|
Score = 820 bits (2117), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 395/463 (85%), Positives = 425/463 (91%)
Query: 7 KLTQLKSAVAGLNQISENEKNGFINLVARYLSGEAQHVEWSKIQTPTDKIVVPCDSLAPV 66
K+ +L+SAVA LNQISENEK+GFI+LV+RYLSGEA+ +EWSKIQTPTD++VVP D+L+P
Sbjct: 5 KIAKLQSAVAELNQISENEKSGFISLVSRYLSGEAEQIEWSKIQTPTDEVVVPYDTLSPP 64
Query: 67 PEDPAETKKLLDKLVVLKLNGGLGTTMGCTGPKSVIEVRNGLTFLDLIVIQIENLNAKYG 126
PED TKKLLDKL VLKLNGGLGTTMGCTGPKSVIEVRNG TFLDLIVIQIE+LN KYG
Sbjct: 65 PEDLEATKKLLDKLAVLKLNGGLGTTMGCTGPKSVIEVRNGFTFLDLIVIQIESLNKKYG 124
Query: 127 CNVPLLLMNSFNTHDDTSKIIEKYSKSNVEIHTFNQSQYPRLCADDFVPLPCKGKTDKDG 186
CNVPLLLMNSFNTHDDT KI+EKY+ SN+EIHTFNQSQYPRL +DF PLP KG KDG
Sbjct: 125 CNVPLLLMNSFNTHDDTQKIVEKYANSNIEIHTFNQSQYPRLVMEDFQPLPSKGHAGKDG 184
Query: 187 WYPPGHGDVFPSLMNSGKLDALISQGKEYVFAANSDNLGAIVDLKILNHLIQNKNEYCME 246
WYPPGHGDVFPSLMNSGKLDAL+SQGKEYVF ANSDNLGAIVD+KILNHLI N+NEYCME
Sbjct: 185 WYPPGHGDVFPSLMNSGKLDALLSQGKEYVFIANSDNLGAIVDIKILNHLINNQNEYCME 244
Query: 247 VTPKTLADVKGGTLISYEGKVQLLEIAQVPDEHVNEFKSIEKFKIFNTNNLWVNLKAIKR 306
VTPKTLADVKGGTLISYEG+VQLLEIAQVPD HVNEFKSIEKFKIFNTNNLWVNLKAIKR
Sbjct: 245 VTPKTLADVKGGTLISYEGRVQLLEIAQVPDAHVNEFKSIEKFKIFNTNNLWVNLKAIKR 304
Query: 307 LVEADALKMEIIPNPKEVDGIKVLQLETAAGAAIRFFDHAIGCNVHRSRFLPVKATSDLL 366
LVEADALKMEIIPNPKEVDG+KVLQLETAAGAAIRFFDHAIG NV RSRFLPVKATSDLL
Sbjct: 305 LVEADALKMEIIPNPKEVDGVKVLQLETAAGAAIRFFDHAIGINVPRSRFLPVKATSDLL 364
Query: 367 LVQSDLYTLADGFVTRNEARKNPANPTIELGPEFKKVGNFLSRFKSIPSIIELDSLKVTG 426
LVQSDLY L DGFV RN+AR NP+NP+IELGPEFKKV NFLSRFKSIPSI+ELDSLKV+G
Sbjct: 365 LVQSDLYMLVDGFVIRNKARTNPSNPSIELGPEFKKVANFLSRFKSIPSIVELDSLKVSG 424
Query: 427 DVWFGANITLKGKVTIAAKSGEKLEIPDGAVLENKEINGPGDL 469
DVWFG + LKG V+IAAKSG KLEI DGAVLENK INGP D+
Sbjct: 425 DVWFGEGVVLKGNVSIAAKSGVKLEISDGAVLENKVINGPEDI 467
|
Plays a central role as a glucosyl donor in cellular metabolic pathways. Musa acuminata (taxid: 4641) EC: 2EC: .EC: 7EC: .EC: 7EC: .EC: 9 |
| >sp|P57751|UGPA1_ARATH UTP--glucose-1-phosphate uridylyltransferase 1 OS=Arabidopsis thaliana GN=At5g17310 PE=2 SV=1 | Back alignment and function description |
|---|
Score = 813 bits (2099), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 404/468 (86%), Positives = 433/468 (92%)
Query: 2 ATDAEKLTQLKSAVAGLNQISENEKNGFINLVARYLSGEAQHVEWSKIQTPTDKIVVPCD 61
AT EKL QLKSAV GL ++SENEK+GFINLV+RYLSGEAQH+EWSKIQTPTD+IVVP D
Sbjct: 3 ATATEKLPQLKSAVDGLTEMSENEKSGFINLVSRYLSGEAQHIEWSKIQTPTDEIVVPYD 62
Query: 62 SLAPVPEDPAETKKLLDKLVVLKLNGGLGTTMGCTGPKSVIEVRNGLTFLDLIVIQIENL 121
+A V ED +ETK LLDKLVVLKLNGGLGTTMGCTGPKSVIEVR+GLTFLDLIVIQIENL
Sbjct: 63 KMANVSEDASETKYLLDKLVVLKLNGGLGTTMGCTGPKSVIEVRDGLTFLDLIVIQIENL 122
Query: 122 NAKYGCNVPLLLMNSFNTHDDTSKIIEKYSKSNVEIHTFNQSQYPRLCADDFVPLPCKGK 181
N KY C VPL+LMNSFNTHDDT KI+EKY+KSNV+IHTFNQS+YPR+ AD+FVP P KGK
Sbjct: 123 NNKYNCKVPLVLMNSFNTHDDTQKIVEKYTKSNVDIHTFNQSKYPRVVADEFVPWPSKGK 182
Query: 182 TDKDGWYPPGHGDVFPSLMNSGKLDALISQGKEYVFAANSDNLGAIVDLKILNHLIQNKN 241
TDKDGWYPPGHGDVFPSLMNSGKLDA +SQGKEYVF ANSDNLGAIVDLKIL HLIQNKN
Sbjct: 183 TDKDGWYPPGHGDVFPSLMNSGKLDAFLSQGKEYVFIANSDNLGAIVDLKILKHLIQNKN 242
Query: 242 EYCMEVTPKTLADVKGGTLISYEGKVQLLEIAQVPDEHVNEFKSIEKFKIFNTNNLWVNL 301
EYCMEVTPKTLADVKGGTLISYEGKVQLLEIAQVPDEHVNEFKSIEKFKIFNTNNLWVNL
Sbjct: 243 EYCMEVTPKTLADVKGGTLISYEGKVQLLEIAQVPDEHVNEFKSIEKFKIFNTNNLWVNL 302
Query: 302 KAIKRLVEADALKMEIIPNPKEVDGIKVLQLETAAGAAIRFFDHAIGCNVHRSRFLPVKA 361
KAIK+LVEADALKMEIIPNPKEVDG+KVLQLETAAGAAIRFFD+AIG NV RSRFLPVKA
Sbjct: 303 KAIKKLVEADALKMEIIPNPKEVDGVKVLQLETAAGAAIRFFDNAIGVNVPRSRFLPVKA 362
Query: 362 TSDLLLVQSDLYTLADGFVTRNEARKNPANPTIELGPEFKKVGNFLSRFKSIPSIIELDS 421
TSDLLLVQSDLYTL DGFVTRN+AR NP NP IELGPEFKKV +FLSRFKSIPSI+ELDS
Sbjct: 363 TSDLLLVQSDLYTLVDGFVTRNKARTNPTNPAIELGPEFKKVASFLSRFKSIPSIVELDS 422
Query: 422 LKVTGDVWFGANITLKGKVTIAAKSGEKLEIPDGAVLENKEINGPGDL 469
LKV+GDVWFG+ + LKGKVT+ A +G KLEIPD AVLENK+INGP DL
Sbjct: 423 LKVSGDVWFGSGVVLKGKVTVKANAGTKLEIPDNAVLENKDINGPEDL 470
|
Plays a central role as a glucosyl donor in cellular metabolic pathways. Arabidopsis thaliana (taxid: 3702) EC: 2 EC: . EC: 7 EC: . EC: 7 EC: . EC: 9 |
| >sp|P19595|UGPA_SOLTU UTP--glucose-1-phosphate uridylyltransferase OS=Solanum tuberosum PE=1 SV=3 | Back alignment and function description |
|---|
Score = 812 bits (2097), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 406/467 (86%), Positives = 435/467 (93%), Gaps = 1/467 (0%)
Query: 4 DAEKLTQLKSAVAGLNQISENEKNGFINLVARYLSGEAQHVEWSKIQTPTDKIVVPCDSL 63
DAEKL LKSAVAGLNQISENEK+GFINLV RYLSGEAQH++WSKIQTPTD++VVP D L
Sbjct: 11 DAEKLNNLKSAVAGLNQISENEKSGFINLVGRYLSGEAQHIDWSKIQTPTDEVVVPYDKL 70
Query: 64 APVPEDPAETKKLLDKLVVLKLNGGLGTTMGCTGPKSVIEVRNGLTFLDLIVIQIENLNA 123
AP+ EDPAETKKLLDKLVVLKLNGGLGTTMGCTGPKSVIEVRNGLTFLDLIV QIE LNA
Sbjct: 71 APLSEDPAETKKLLDKLVVLKLNGGLGTTMGCTGPKSVIEVRNGLTFLDLIVKQIEALNA 130
Query: 124 KYGCNVPLLLMNSFNTHDDTSKIIEKYSKSNVEIHTFNQSQYPRLCADDFVPLPCKGKTD 183
K+GC+VPLLLMNSFNTHDDT KI+EKY+ SN++IHTFNQSQYPRL +DF PLPCKG +
Sbjct: 131 KFGCSVPLLLMNSFNTHDDTLKIVEKYANSNIDIHTFNQSQYPRLVTEDFAPLPCKGNSG 190
Query: 184 KDGWYPPGHGDVFPSLMNSGKLDALISQGKEYVFAANSDNLGAIVDLKILNHLIQNKNEY 243
KDGWYPPGHGDVFPSLMNSGKLDAL+++GKEYVF ANSDNLGAIVDLKILNHLI NKNEY
Sbjct: 191 KDGWYPPGHGDVFPSLMNSGKLDALLAKGKEYVFVANSDNLGAIVDLKILNHLILNKNEY 250
Query: 244 CMEVTPKTLADVKGGTLISYEGKVQLLEIAQVPDEHVNEFKSIEKFKIFNTNNLWVNLKA 303
CMEVTPKTLADVKGGTLISYEGKVQLLEIAQVPDEHVNEFKSIEKFKIFNTNNLWVNL A
Sbjct: 251 CMEVTPKTLADVKGGTLISYEGKVQLLEIAQVPDEHVNEFKSIEKFKIFNTNNLWVNLSA 310
Query: 304 IKRLVEADALKMEIIPNPKEVDGIKVLQLETAAGAAIRFFDHAIGCNVHRSRFLPVKATS 363
IKRLVEADALKMEIIPNPKEVDG+KVLQLETAAGAAI+FFD AIG NV RSRFLPVKATS
Sbjct: 311 IKRLVEADALKMEIIPNPKEVDGVKVLQLETAAGAAIKFFDRAIGANVPRSRFLPVKATS 370
Query: 364 DLLLVQSDLYTLAD-GFVTRNEARKNPANPTIELGPEFKKVGNFLSRFKSIPSIIELDSL 422
DLLLVQSDLYTL D G+V RN AR NP+NP+IELGPEFKKV NFL RFKSIPSII+LDSL
Sbjct: 371 DLLLVQSDLYTLTDEGYVIRNPARSNPSNPSIELGPEFKKVANFLGRFKSIPSIIDLDSL 430
Query: 423 KVTGDVWFGANITLKGKVTIAAKSGEKLEIPDGAVLENKEINGPGDL 469
KVTGDVWFG+ +TLKGKVT+AAKSG KLEIPDGAV+ NK+INGP D+
Sbjct: 431 KVTGDVWFGSGVTLKGKVTVAAKSGVKLEIPDGAVIANKDINGPEDI 477
|
Plays a central role as a glucosyl donor in cellular metabolic pathways. Solanum tuberosum (taxid: 4113) EC: 2 EC: . EC: 7 EC: . EC: 7 EC: . EC: 9 |
| >sp|Q9M9P3|UGPA2_ARATH Probable UTP--glucose-1-phosphate uridylyltransferase 2 OS=Arabidopsis thaliana GN=At3g03250 PE=1 SV=1 | Back alignment and function description |
|---|
Score = 805 bits (2079), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 398/469 (84%), Positives = 433/469 (92%)
Query: 1 MATDAEKLTQLKSAVAGLNQISENEKNGFINLVARYLSGEAQHVEWSKIQTPTDKIVVPC 60
MA E L QLKSAV GL ++SE+EK+GFI+LV+RYLSGEAQH+EWSKIQTPTD+IVVP
Sbjct: 1 MAATTENLPQLKSAVDGLTEMSESEKSGFISLVSRYLSGEAQHIEWSKIQTPTDEIVVPY 60
Query: 61 DSLAPVPEDPAETKKLLDKLVVLKLNGGLGTTMGCTGPKSVIEVRNGLTFLDLIVIQIEN 120
+ + PV +D AETK LLDKLVVLKLNGGLGTTMGCTGPKSVIEVR+GLTFLDLIVIQIEN
Sbjct: 61 EKMTPVSQDVAETKNLLDKLVVLKLNGGLGTTMGCTGPKSVIEVRDGLTFLDLIVIQIEN 120
Query: 121 LNAKYGCNVPLLLMNSFNTHDDTSKIIEKYSKSNVEIHTFNQSQYPRLCADDFVPLPCKG 180
LN KYGC VPL+LMNSFNTHDDT KI+EKY+ SNV+IHTFNQS+YPR+ AD+FVP P KG
Sbjct: 121 LNNKYGCKVPLVLMNSFNTHDDTHKIVEKYTNSNVDIHTFNQSKYPRVVADEFVPWPSKG 180
Query: 181 KTDKDGWYPPGHGDVFPSLMNSGKLDALISQGKEYVFAANSDNLGAIVDLKILNHLIQNK 240
KTDK+GWYPPGHGDVFP+LMNSGKLD +SQGKEYVF ANSDNLGAIVDL IL HLIQNK
Sbjct: 181 KTDKEGWYPPGHGDVFPALMNSGKLDTFLSQGKEYVFVANSDNLGAIVDLTILKHLIQNK 240
Query: 241 NEYCMEVTPKTLADVKGGTLISYEGKVQLLEIAQVPDEHVNEFKSIEKFKIFNTNNLWVN 300
NEYCMEVTPKTLADVKGGTLISYEGKVQLLEIAQVPDEHVNEFKSIEKFKIFNTNNLWVN
Sbjct: 241 NEYCMEVTPKTLADVKGGTLISYEGKVQLLEIAQVPDEHVNEFKSIEKFKIFNTNNLWVN 300
Query: 301 LKAIKRLVEADALKMEIIPNPKEVDGIKVLQLETAAGAAIRFFDHAIGCNVHRSRFLPVK 360
LKAIK+LVEADALKMEIIPNPKEVDG+KVLQLETAAGAAIRFFD+AIG NV RSRFLPVK
Sbjct: 301 LKAIKKLVEADALKMEIIPNPKEVDGVKVLQLETAAGAAIRFFDNAIGVNVPRSRFLPVK 360
Query: 361 ATSDLLLVQSDLYTLADGFVTRNEARKNPANPTIELGPEFKKVGNFLSRFKSIPSIIELD 420
A+SDLLLVQSDLYTL DGFVTRN+AR NP+NP+IELGPEFKKV FLSRFKSIPSI+ELD
Sbjct: 361 ASSDLLLVQSDLYTLVDGFVTRNKARTNPSNPSIELGPEFKKVATFLSRFKSIPSIVELD 420
Query: 421 SLKVTGDVWFGANITLKGKVTIAAKSGEKLEIPDGAVLENKEINGPGDL 469
SLKV+GDVWFG++I LKGKVT+AAKSG KLEIPD AV+ENK INGP DL
Sbjct: 421 SLKVSGDVWFGSSIVLKGKVTVAAKSGVKLEIPDRAVVENKNINGPEDL 469
|
Plays a central role as a glucosyl donor in cellular metabolic pathways. Arabidopsis thaliana (taxid: 3702) EC: 2 EC: . EC: 7 EC: . EC: 7 EC: . EC: 9 |
| >sp|Q9LKG7|UGPA_ASTPN UTP--glucose-1-phosphate uridylyltransferase OS=Astragalus penduliflorus GN=UGP PE=2 SV=1 | Back alignment and function description |
|---|
Score = 803 bits (2074), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 398/468 (85%), Positives = 427/468 (91%)
Query: 2 ATDAEKLTQLKSAVAGLNQISENEKNGFINLVARYLSGEAQHVEWSKIQTPTDKIVVPCD 61
AT ++L+ LKS+VAGLNQISENEK+GFINLVARYLSGEAQHVEWSKIQTPTD++VVP D
Sbjct: 4 ATATDRLSNLKSSVAGLNQISENEKSGFINLVARYLSGEAQHVEWSKIQTPTDEVVVPYD 63
Query: 62 SLAPVPEDPAETKKLLDKLVVLKLNGGLGTTMGCTGPKSVIEVRNGLTFLDLIVIQIENL 121
+LAP P+ E K LLDKLVVLKLNGGLGTTMGCTGPKSVIEVR+GLTFLDLIVIQIENL
Sbjct: 64 TLAPTPDGSLEIKNLLDKLVVLKLNGGLGTTMGCTGPKSVIEVRDGLTFLDLIVIQIENL 123
Query: 122 NAKYGCNVPLLLMNSFNTHDDTSKIIEKYSKSNVEIHTFNQSQYPRLCADDFVPLPCKGK 181
N+KYG NVPLLLMNSFNTHDDT I+EKY SN+EIHTFNQSQYPRL DDF+PLP KG+
Sbjct: 124 NSKYGSNVPLLLMNSFNTHDDTQTIVEKYQNSNIEIHTFNQSQYPRLVVDDFLPLPSKGR 183
Query: 182 TDKDGWYPPGHGDVFPSLMNSGKLDALISQGKEYVFAANSDNLGAIVDLKILNHLIQNKN 241
TDKDGWYPPGHG +FPSL NSGKLDALISQGKEYVF ANSDNLGAIVDLKILNHL+ +KN
Sbjct: 184 TDKDGWYPPGHGSMFPSLSNSGKLDALISQGKEYVFVANSDNLGAIVDLKILNHLVAHKN 243
Query: 242 EYCMEVTPKTLADVKGGTLISYEGKVQLLEIAQVPDEHVNEFKSIEKFKIFNTNNLWVNL 301
EYCMEVTPKTLADVKGGTLISYEG+VQLLEIAQVPDEHV EFKSIEKFKIFNTNNLWVNL
Sbjct: 244 EYCMEVTPKTLADVKGGTLISYEGRVQLLEIAQVPDEHVGEFKSIEKFKIFNTNNLWVNL 303
Query: 302 KAIKRLVEADALKMEIIPNPKEVDGIKVLQLETAAGAAIRFFDHAIGCNVHRSRFLPVKA 361
KAIKRLVEADALKMEIIPNPKEVDG+KVLQLETAAGAAIRFFD AIG NV RSRFLPVKA
Sbjct: 304 KAIKRLVEADALKMEIIPNPKEVDGVKVLQLETAAGAAIRFFDKAIGINVPRSRFLPVKA 363
Query: 362 TSDLLLVQSDLYTLADGFVTRNEARKNPANPTIELGPEFKKVGNFLSRFKSIPSIIELDS 421
TSDLLLVQSDLYT+ +G V RN+AR NP NP+IELGPEFKKV NFL RFKSIPSI+ELDS
Sbjct: 364 TSDLLLVQSDLYTVENGSVIRNKARTNPENPSIELGPEFKKVSNFLGRFKSIPSIVELDS 423
Query: 422 LKVTGDVWFGANITLKGKVTIAAKSGEKLEIPDGAVLENKEINGPGDL 469
LKV GDVWFG + LKGKV+I AKSG K+EIPDGAV+ NKEINGP DL
Sbjct: 424 LKVVGDVWFGTGVILKGKVSIVAKSGVKVEIPDGAVIANKEINGPKDL 471
|
Plays a central role as a glucosyl donor in cellular metabolic pathways. Astragalus penduliflorus (taxid: 158323) EC: 2 EC: . EC: 7 EC: . EC: 7 EC: . EC: 9 |
| >sp|O64459|UGPA_PYRPY UTP--glucose-1-phosphate uridylyltransferase OS=Pyrus pyrifolia PE=2 SV=1 | Back alignment and function description |
|---|
Score = 798 bits (2060), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 402/461 (87%), Positives = 427/461 (92%), Gaps = 1/461 (0%)
Query: 10 QLKSAVAGLNQISENEKNGFINLVARYLSGE-AQHVEWSKIQTPTDKIVVPCDSLAPVPE 68
+LKS VA L+QISENEKNGFINLV+RY+SGE AQHVEWSKIQTPTD++VVP D LAP PE
Sbjct: 11 KLKSDVASLSQISENEKNGFINLVSRYVSGEEAQHVEWSKIQTPTDEVVVPYDGLAPTPE 70
Query: 69 DPAETKKLLDKLVVLKLNGGLGTTMGCTGPKSVIEVRNGLTFLDLIVIQIENLNAKYGCN 128
DP E KKLLDKLVVLKLNGGLGTTMGCTGPKSVIEVRNGLTFLDLIVIQIENLN KYG
Sbjct: 71 DPEEIKKLLDKLVVLKLNGGLGTTMGCTGPKSVIEVRNGLTFLDLIVIQIENLNNKYGSC 130
Query: 129 VPLLLMNSFNTHDDTSKIIEKYSKSNVEIHTFNQSQYPRLCADDFVPLPCKGKTDKDGWY 188
VPLLLMNSFNTHDDT KI+EKYSKSNV+IHTFNQSQYPRL +DF PLP KG+T KDGWY
Sbjct: 131 VPLLLMNSFNTHDDTQKIVEKYSKSNVQIHTFNQSQYPRLVVEDFSPLPSKGQTGKDGWY 190
Query: 189 PPGHGDVFPSLMNSGKLDALISQGKEYVFAANSDNLGAIVDLKILNHLIQNKNEYCMEVT 248
PPGHGDVFPSL NSGKLD L+SQGKEYVF ANSDNLGA+VDLKIL+HLIQ KNEYCMEVT
Sbjct: 191 PPGHGDVFPSLKNSGKLDLLLSQGKEYVFIANSDNLGAVVDLKILHHLIQKKNEYCMEVT 250
Query: 249 PKTLADVKGGTLISYEGKVQLLEIAQVPDEHVNEFKSIEKFKIFNTNNLWVNLKAIKRLV 308
PKTLADVKGGTLISYEG+VQLLEIAQVPD+HVNEFKSIEKFKIFNTNNLWVNL AIKRLV
Sbjct: 251 PKTLADVKGGTLISYEGRVQLLEIAQVPDQHVNEFKSIEKFKIFNTNNLWVNLNAIKRLV 310
Query: 309 EADALKMEIIPNPKEVDGIKVLQLETAAGAAIRFFDHAIGCNVHRSRFLPVKATSDLLLV 368
EADALKMEIIPNPKEVDG+KVLQLETAAGAAIRFF+HAIG NV RSRFLPVKATSDLLLV
Sbjct: 311 EADALKMEIIPNPKEVDGVKVLQLETAAGAAIRFFNHAIGINVPRSRFLPVKATSDLLLV 370
Query: 369 QSDLYTLADGFVTRNEARKNPANPTIELGPEFKKVGNFLSRFKSIPSIIELDSLKVTGDV 428
QSDLYTL DGFVTRN ARKNP NPTIELGPEFKKVG++LSRFKSIPSI+EL+SLKV+GDV
Sbjct: 371 QSDLYTLQDGFVTRNSARKNPENPTIELGPEFKKVGSYLSRFKSIPSILELESLKVSGDV 430
Query: 429 WFGANITLKGKVTIAAKSGEKLEIPDGAVLENKEINGPGDL 469
WFGA + LKGKVTI AKSG KLEIPD AV+ NK+INGP DL
Sbjct: 431 WFGAGVVLKGKVTITAKSGVKLEIPDNAVIANKDINGPEDL 471
|
Plays a central role as a glucosyl donor in cellular metabolic pathways. Pyrus pyrifolia (taxid: 3767) EC: 2 EC: . EC: 7 EC: . EC: 7 EC: . EC: 9 |
| >sp|Q43772|UGPA_HORVU UTP--glucose-1-phosphate uridylyltransferase OS=Hordeum vulgare PE=2 SV=1 | Back alignment and function description |
|---|
Score = 775 bits (2001), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 384/463 (82%), Positives = 422/463 (91%)
Query: 7 KLTQLKSAVAGLNQISENEKNGFINLVARYLSGEAQHVEWSKIQTPTDKIVVPCDSLAPV 66
K+ L+ AVA L +ISENEK GFI+LV+RYLSGEA+ +EWSKIQTPTD++VVP D+LAP
Sbjct: 11 KIDGLRDAVAKLGEISENEKAGFISLVSRYLSGEAEQIEWSKIQTPTDEVVVPYDTLAPP 70
Query: 67 PEDPAETKKLLDKLVVLKLNGGLGTTMGCTGPKSVIEVRNGLTFLDLIVIQIENLNAKYG 126
PED K LLDKLVVLKLNGGLGTTMGCTGPKSVIEVRNG TFLDLIVIQIE+LN KYG
Sbjct: 71 PEDLDAMKALLDKLVVLKLNGGLGTTMGCTGPKSVIEVRNGFTFLDLIVIQIESLNKKYG 130
Query: 127 CNVPLLLMNSFNTHDDTSKIIEKYSKSNVEIHTFNQSQYPRLCADDFVPLPCKGKTDKDG 186
C+VPLLLMNSFNTHDDT KI+EKYS SN+EIHTFNQSQYPR+ +DF+PLP KG+T KDG
Sbjct: 131 CSVPLLLMNSFNTHDDTQKIVEKYSNSNIEIHTFNQSQYPRIVTEDFLPLPSKGQTGKDG 190
Query: 187 WYPPGHGDVFPSLMNSGKLDALISQGKEYVFAANSDNLGAIVDLKILNHLIQNKNEYCME 246
WYPPGHGDVFPSL NSGKLD L+SQGKEYVF ANSDNLGAIVD+KILNHLI N+NEYCME
Sbjct: 191 WYPPGHGDVFPSLNNSGKLDTLLSQGKEYVFVANSDNLGAIVDIKILNHLIHNQNEYCME 250
Query: 247 VTPKTLADVKGGTLISYEGKVQLLEIAQVPDEHVNEFKSIEKFKIFNTNNLWVNLKAIKR 306
VTPKTLADVKGGTLISYEG+VQLLEIAQVPDEHV+EFKSIEKFKIFNTNNLWVNLKAIKR
Sbjct: 251 VTPKTLADVKGGTLISYEGRVQLLEIAQVPDEHVDEFKSIEKFKIFNTNNLWVNLKAIKR 310
Query: 307 LVEADALKMEIIPNPKEVDGIKVLQLETAAGAAIRFFDHAIGCNVHRSRFLPVKATSDLL 366
LV+A+ALKMEIIPNPKEVDG+KVLQLETAAGAAIRFF+ AIG NV RSRFLPVKATSDLL
Sbjct: 311 LVDAEALKMEIIPNPKEVDGVKVLQLETAAGAAIRFFEKAIGINVPRSRFLPVKATSDLL 370
Query: 367 LVQSDLYTLADGFVTRNEARKNPANPTIELGPEFKKVGNFLSRFKSIPSIIELDSLKVTG 426
LVQSDLYTL DG+V RN AR P+NP+IELGPEFKKV NFL+RFKSIPSI+ELDSLKV+G
Sbjct: 371 LVQSDLYTLVDGYVIRNPARVKPSNPSIELGPEFKKVANFLARFKSIPSIVELDSLKVSG 430
Query: 427 DVWFGANITLKGKVTIAAKSGEKLEIPDGAVLENKEINGPGDL 469
DV FG+ + LKG VTIAAK+G KLEIPDGAVLENK+INGP D+
Sbjct: 431 DVSFGSGVVLKGNVTIAAKAGVKLEIPDGAVLENKDINGPEDI 473
|
Plays a central role as a glucosyl donor in cellular metabolic pathways. Hordeum vulgare (taxid: 4513) EC: 2 EC: . EC: 7 EC: . EC: 7 EC: . EC: 9 |
| >sp|P32861|UGPA1_YEAST UTP--glucose-1-phosphate uridylyltransferase OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) GN=UGP1 PE=1 SV=1 | Back alignment and function description |
|---|
Score = 498 bits (1282), Expect = e-140, Method: Compositional matrix adjust.
Identities = 255/449 (56%), Positives = 323/449 (71%), Gaps = 11/449 (2%)
Query: 23 ENEKNGFINLVARYLSGEAQH--VEWSKIQTPTDKIVVPCDSLAPVPEDPAETKKLLDKL 80
ENE + F L RYL ++ +EW KI++P VV + ++ PE+ + L KL
Sbjct: 49 ENELDSFFTLFRRYLVEKSSRTTLEWDKIKSPNPDEVVKYEIISQQPENVSN----LSKL 104
Query: 81 VVLKLNGGLGTTMGCTGPKSVIEVRNGLTFLDLIVIQIENLNAKYGCNVPLLLMNSFNTH 140
VLKLNGGLGT+MGC GPKSVIEVR G TFLDL V QIE LN +Y +VPLLLMNSFNT
Sbjct: 105 AVLKLNGGLGTSMGCVGPKSVIEVREGNTFLDLSVRQIEYLNRQYDSDVPLLLMNSFNTD 164
Query: 141 DDTSKIIEKYSKSNVEIHTFNQSQYPRLCADDFVPLPCKGKTDKDGWYPPGHGDVFPSLM 200
DT +I+KYS + + I +FNQS++PR+ D +P+P + + D WYPPGHGD+F SL
Sbjct: 165 KDTEHLIKKYSANRIRIRSFNQSRFPRVYKDSLLPVPTEYDSPLDAWYPPGHGDLFESLH 224
Query: 201 NSGKLDALISQGKEYVFAANSDNLGAIVDLKILNHLIQNKNEYCMEVTPKTLADVKGGTL 260
SG+LDALI+QG+E +F +N DNLGA VDLKILNH+I+ EY ME+T KT ADVKGGTL
Sbjct: 225 VSGELDALIAQGREILFVSNGDNLGATVDLKILNHMIETGAEYIMELTDKTRADVKGGTL 284
Query: 261 ISYEGKVQLLEIAQVPDEHVNEFKSIEKFKIFNTNNLWVNLKAIKRLVEADALKMEIIPN 320
ISY+G+V+LLE+AQVP EH++EFK+I KF FNTNNLW+NLKA+KRL+E+ L+MEIIPN
Sbjct: 285 ISYDGQVRLLEVAQVPKEHIDEFKNIRKFTNFNTNNLWINLKAVKRLIESSNLEMEIIPN 344
Query: 321 PKEV--DG--IKVLQLETAAGAAIRFFDHAIGCNVHRSRFLPVKATSDLLLVQSDLYTLA 376
K + DG I VLQLETA GAAIR FD A G V RSRFLPVK SDLLLV+SDL+ L
Sbjct: 345 QKTITRDGHEINVLQLETACGAAIRHFDGAHGVVVPRSRFLPVKTCSDLLLVKSDLFRLE 404
Query: 377 DGFVTRNEARKNPANPTIELGPEFKKVGNFLSRFKSIPSIIELDSLKVTGDVWFGANITL 436
G + + +R P NP I+LG FKKV F +R IP I+ELD L +TG+V+ G ++TL
Sbjct: 405 HGSLKLDPSRFGP-NPLIKLGSHFKKVSGFNARIPHIPKIVELDHLTITGNVFLGKDVTL 463
Query: 437 KGKVTIAAKSGEKLEIPDGAVLENKEING 465
+G V I G K++IP+G++LEN + G
Sbjct: 464 RGTVIIVCSDGHKIDIPNGSILENVVVTG 492
|
Plays a central role as a glucosyl donor in cellular metabolic pathways. Saccharomyces cerevisiae (strain ATCC 204508 / S288c) (taxid: 559292) EC: 2 EC: . EC: 7 EC: . EC: 7 EC: . EC: 9 |
| >sp|O35156|UGPA_CRIGR UTP--glucose-1-phosphate uridylyltransferase OS=Cricetulus griseus GN=UGP2 PE=2 SV=3 | Back alignment and function description |
|---|
Score = 494 bits (1272), Expect = e-139, Method: Compositional matrix adjust.
Identities = 252/468 (53%), Positives = 331/468 (70%), Gaps = 19/468 (4%)
Query: 11 LKSAVAGLNQISENEKNGFINLVARYLSGEAQHVEWSKIQTPTDKIVVPCDSLAPVPED- 69
L +A + + ++ + +GF L R+L + V+W KIQ P P DS+ P +
Sbjct: 40 LTTATSHEYEHTKKDLDGFRKLYHRFLQEKGPSVDWGKIQRP------PEDSIQPYEKIK 93
Query: 70 ----PAETKKLLDKLVVLKLNGGLGTTMGCTGPKSVIEVRNGLTFLDLIVIQIENLNAKY 125
P +L+KLVV+KLNGGLGT+MGC GPKS+I VRN TFLDL V QIE+LN Y
Sbjct: 94 ARGLPDNISSVLNKLVVVKLNGGLGTSMGCKGPKSLIGVRNENTFLDLTVQQIEHLNKSY 153
Query: 126 GCNVPLLLMNSFNTHDDTSKIIEKYSKSNVEIHTFNQSQYPRLCADDFVPLP---CKGKT 182
+VPL+LMNSFNT +DT KI++KY+ V+I+TFNQS+YPR+ + +P+
Sbjct: 154 NTDVPLVLMNSFNTDEDTKKILQKYNHCRVKIYTFNQSRYPRINKESLLPVAKDVSSSGE 213
Query: 183 DKDGWYPPGHGDVFPSLMNSGKLDALISQGKEYVFAANSDNLGAIVDLKILNHLIQNKN- 241
+ WYPPGHGD++ S NSG LD + +GKEY+F +N DNLGA VDL ILNHL+ N
Sbjct: 214 STEAWYPPGHGDIYASFYNSGLLDTFLEEGKEYIFVSNIDNLGATVDLYILNHLMNPPNG 273
Query: 242 ---EYCMEVTPKTLADVKGGTLISYEGKVQLLEIAQVPDEHVNEFKSIEKFKIFNTNNLW 298
E+ MEVT KT ADVKGGTL YEGK++L+EIAQVP HV+EFKS+ KFKIFNTNNLW
Sbjct: 274 KRCEFVMEVTNKTRADVKGGTLTQYEGKLRLVEIAQVPKAHVDEFKSVSKFKIFNTNNLW 333
Query: 299 VNLKAIKRLVEADALKMEIIPNPKEVDG-IKVLQLETAAGAAIRFFDHAIGCNVHRSRFL 357
++L A+KRL E +A+ MEII NPK +DG + V+QLETA GAAI+ F++++G NV RSRFL
Sbjct: 334 ISLAAVKRLQEQNAIDMEIIVNPKTLDGGLNVIQLETAVGAAIKSFENSLGINVPRSRFL 393
Query: 358 PVKATSDLLLVQSDLYTLADGFVTRNEARKNPANPTIELGPEFKKVGNFLSRFKSIPSII 417
PVK TSDLLLV S+LY+L G +T +E R+ P P ++LG F KV ++L RF+SIP ++
Sbjct: 394 PVKTTSDLLLVMSNLYSLNAGSLTMSEKREFPTVPLVKLGSSFTKVQDYLRRFESIPDML 453
Query: 418 ELDSLKVTGDVWFGANITLKGKVTIAAKSGEKLEIPDGAVLENKEING 465
ELD L V+GDV FG N++LKG V I A G++++IP GAVLENK ++G
Sbjct: 454 ELDHLTVSGDVTFGKNVSLKGTVIIIANHGDRIDIPPGAVLENKIVSG 501
|
Plays a central role as a glucosyl donor in cellular metabolic pathways. Cricetulus griseus (taxid: 10029) EC: 2 EC: . EC: 7 EC: . EC: 7 EC: . EC: 9 |
| >sp|Q91ZJ5|UGPA_MOUSE UTP--glucose-1-phosphate uridylyltransferase OS=Mus musculus GN=Ugp2 PE=2 SV=3 | Back alignment and function description |
|---|
Score = 494 bits (1271), Expect = e-139, Method: Compositional matrix adjust.
Identities = 253/468 (54%), Positives = 332/468 (70%), Gaps = 19/468 (4%)
Query: 11 LKSAVAGLNQISENEKNGFINLVARYLSGEAQHVEWSKIQTPTDKIVVPCDSLAPVPED- 69
L +A + + ++ + +GF L R+L + V+W KIQ P P DS+ P +
Sbjct: 40 LTTAASHEFEHTKKDLDGFRKLFHRFLQEKGPSVDWGKIQRP------PEDSIQPYEKIK 93
Query: 70 ----PAETKKLLDKLVVLKLNGGLGTTMGCTGPKSVIEVRNGLTFLDLIVIQIENLNAKY 125
P +L+KLVV+KLNGGLGT+MGC GPKS+I VRN TFLDL V QIE+LN Y
Sbjct: 94 ARGLPDNISSVLNKLVVVKLNGGLGTSMGCKGPKSLIGVRNENTFLDLTVQQIEHLNKTY 153
Query: 126 GCNVPLLLMNSFNTHDDTSKIIEKYSKSNVEIHTFNQSQYPRLCADDFVPLP---CKGKT 182
+VPL+LMNSFNT +DT KI++KY+ V+I+TFNQS+YPR+ + +P+
Sbjct: 154 NTDVPLVLMNSFNTDEDTKKILQKYNHCRVKIYTFNQSRYPRINKESLLPIAKDVSYSGE 213
Query: 183 DKDGWYPPGHGDVFPSLMNSGKLDALISQGKEYVFAANSDNLGAIVDLKILNHLIQNKN- 241
+ + WYPPGHGD++ S NSG LD I +GKEY+F +N DNLGA VDL ILNHL+ N
Sbjct: 214 NTEAWYPPGHGDIYASFYNSGLLDTFIEEGKEYIFVSNIDNLGATVDLYILNHLMNPPNG 273
Query: 242 ---EYCMEVTPKTLADVKGGTLISYEGKVQLLEIAQVPDEHVNEFKSIEKFKIFNTNNLW 298
E+ MEVT KT ADVKGGTL YEGK++L+EIAQVP HV+EFKS+ KFKIFNTNNLW
Sbjct: 274 KRCEFVMEVTNKTRADVKGGTLTQYEGKLRLVEIAQVPKAHVDEFKSVSKFKIFNTNNLW 333
Query: 299 VNLKAIKRLVEADALKMEIIPNPKEVDG-IKVLQLETAAGAAIRFFDHAIGCNVHRSRFL 357
++L A+KRL E +A+ MEII NPK +DG + V+QLETA GAAI+ F++++G NV RSRFL
Sbjct: 334 ISLGAVKRLQEQNAIDMEIIVNPKTLDGGLNVIQLETAVGAAIKSFENSLGINVPRSRFL 393
Query: 358 PVKATSDLLLVQSDLYTLADGFVTRNEARKNPANPTIELGPEFKKVGNFLSRFKSIPSII 417
PVK TSDLLLV S+LY+L G +T +E R+ P P ++LG F KV ++L RF+SIP ++
Sbjct: 394 PVKTTSDLLLVMSNLYSLNAGSLTMSEKREFPTVPLVKLGSSFTKVQDYLRRFESIPDML 453
Query: 418 ELDSLKVTGDVWFGANITLKGKVTIAAKSGEKLEIPDGAVLENKEING 465
ELD L V+GDV FG N++LKG V I A G++++IP GAVLENK ++G
Sbjct: 454 ELDHLTVSGDVTFGKNVSLKGTVIIIANHGDRIDIPPGAVLENKIVSG 501
|
Plays a central role as a glucosyl donor in cellular metabolic pathways. Mus musculus (taxid: 10090) EC: 2 EC: . EC: 7 EC: . EC: 7 EC: . EC: 9 |
Close Homologs in the Non-Redundant Database Detected by BLAST 
Original result of BLAST against Nonredundant Database
GI ![]() | Alignment Graph ![]() | Length ![]() |
Definition ![]() |
Q cover ![]() |
H cover ![]() |
Identity ![]() |
E-value ![]() |
| Query | 469 | ||||||
| 333035984 | 469 | UDP-glucose pyrophosphorylase [Populus d | 1.0 | 1.0 | 0.884 | 0.0 | |
| 192338746 | 476 | UTP-glucose 1 phosphate uridylyltransfer | 0.997 | 0.983 | 0.891 | 0.0 | |
| 255571289 | 470 | utp-glucose-1-phosphate uridylyltransfer | 0.995 | 0.993 | 0.895 | 0.0 | |
| 224135237 | 469 | predicted protein [Populus trichocarpa] | 1.0 | 1.0 | 0.882 | 0.0 | |
| 82659609 | 469 | UDP-glucose pyrophosphorylase [Populus t | 1.0 | 1.0 | 0.882 | 0.0 | |
| 90820120 | 476 | UDP-glucose pyrophosphorylase [Cucumis m | 0.993 | 0.978 | 0.884 | 0.0 | |
| 32527831 | 470 | UDP-glucose pyrophosphorylase [Populus t | 1.0 | 0.997 | 0.876 | 0.0 | |
| 449456208 | 476 | PREDICTED: UTP--glucose-1-phosphate urid | 0.993 | 0.978 | 0.877 | 0.0 | |
| 308445439 | 465 | UDP-glucose pyrophosphorylase [Gossypium | 0.989 | 0.997 | 0.883 | 0.0 | |
| 211906436 | 465 | UDP-D-glucose pyrophosphorylase [Gossypi | 0.989 | 0.997 | 0.881 | 0.0 |
| >gi|333035984|gb|AEF13021.1| UDP-glucose pyrophosphorylase [Populus deltoides] | Back alignment and taxonomy information |
|---|
Score = 839 bits (2168), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 415/469 (88%), Positives = 440/469 (93%)
Query: 1 MATDAEKLTQLKSAVAGLNQISENEKNGFINLVARYLSGEAQHVEWSKIQTPTDKIVVPC 60
MATD EK++QLKSAVA LNQISE+EK GF+NLV+RYLSGEAQHVEWSKIQTPTD++VVP
Sbjct: 1 MATDTEKISQLKSAVANLNQISESEKTGFVNLVSRYLSGEAQHVEWSKIQTPTDEVVVPY 60
Query: 61 DSLAPVPEDPAETKKLLDKLVVLKLNGGLGTTMGCTGPKSVIEVRNGLTFLDLIVIQIEN 120
D+L PEDP ETK LLDKLVVLKLNGGLGTTMGCTGPKSVIEVRNGLTFLDLIVIQIE+
Sbjct: 61 DTLESTPEDPEETKMLLDKLVVLKLNGGLGTTMGCTGPKSVIEVRNGLTFLDLIVIQIES 120
Query: 121 LNAKYGCNVPLLLMNSFNTHDDTSKIIEKYSKSNVEIHTFNQSQYPRLCADDFVPLPCKG 180
LN KYGC+VPLLLMNSFNTHDDT KIIEKYS SN+EIHTFNQSQYPRL ADDFVPLP KG
Sbjct: 121 LNKKYGCSVPLLLMNSFNTHDDTQKIIEKYSNSNIEIHTFNQSQYPRLVADDFVPLPSKG 180
Query: 181 KTDKDGWYPPGHGDVFPSLMNSGKLDALISQGKEYVFAANSDNLGAIVDLKILNHLIQNK 240
TDKDGWYPPGHGDVFPSL +SGKLDAL+SQGKEYVF ANSDNLGA+VDLKILNHLI+NK
Sbjct: 181 HTDKDGWYPPGHGDVFPSLKSSGKLDALLSQGKEYVFVANSDNLGAVVDLKILNHLIRNK 240
Query: 241 NEYCMEVTPKTLADVKGGTLISYEGKVQLLEIAQVPDEHVNEFKSIEKFKIFNTNNLWVN 300
NEYCMEVTPKTLADVKGGTLISYEGKVQLLEIAQVPD+HVNEFKSIEKFKIFNTNNLWVN
Sbjct: 241 NEYCMEVTPKTLADVKGGTLISYEGKVQLLEIAQVPDQHVNEFKSIEKFKIFNTNNLWVN 300
Query: 301 LKAIKRLVEADALKMEIIPNPKEVDGIKVLQLETAAGAAIRFFDHAIGCNVHRSRFLPVK 360
LKAIKRLVEADALKMEIIPNPKEVDG+KVLQLETAAGAAIRFFDHAIG NV RSRFLPVK
Sbjct: 301 LKAIKRLVEADALKMEIIPNPKEVDGVKVLQLETAAGAAIRFFDHAIGINVPRSRFLPVK 360
Query: 361 ATSDLLLVQSDLYTLADGFVTRNEARKNPANPTIELGPEFKKVGNFLSRFKSIPSIIELD 420
A+SDLLLVQSDLYT+ DGFV RN AR NPANP+IELGPEFKKV +FLSRFKS+PSIIELD
Sbjct: 361 ASSDLLLVQSDLYTVVDGFVIRNPARANPANPSIELGPEFKKVASFLSRFKSVPSIIELD 420
Query: 421 SLKVTGDVWFGANITLKGKVTIAAKSGEKLEIPDGAVLENKEINGPGDL 469
SLKV GDVWFGAN+TLKGKV+IA KSG KLEIP+G VLENKEINGP DL
Sbjct: 421 SLKVAGDVWFGANVTLKGKVSIAVKSGVKLEIPEGVVLENKEINGPEDL 469
|
Source: Populus deltoides Species: Populus deltoides Genus: Populus Family: Salicaceae Order: Malpighiales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|192338746|gb|ACF04278.1| UTP-glucose 1 phosphate uridylyltransferase [Eucalyptus grandis] | Back alignment and taxonomy information |
|---|
Score = 838 bits (2164), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 417/468 (89%), Positives = 441/468 (94%)
Query: 2 ATDAEKLTQLKSAVAGLNQISENEKNGFINLVARYLSGEAQHVEWSKIQTPTDKIVVPCD 61
A DA KL+QLKSAV+GL QISE+EKNGFINLV+RYLSGEAQHV+WSKIQTPTD+IVVP D
Sbjct: 9 APDAAKLSQLKSAVSGLGQISESEKNGFINLVSRYLSGEAQHVDWSKIQTPTDEIVVPYD 68
Query: 62 SLAPVPEDPAETKKLLDKLVVLKLNGGLGTTMGCTGPKSVIEVRNGLTFLDLIVIQIENL 121
SLAP P+DPA TK LLDKLVVLKLNGGLGTTMGCTGPKSVIEVRNGLTFLDLIVIQIENL
Sbjct: 69 SLAPTPQDPAATKSLLDKLVVLKLNGGLGTTMGCTGPKSVIEVRNGLTFLDLIVIQIENL 128
Query: 122 NAKYGCNVPLLLMNSFNTHDDTSKIIEKYSKSNVEIHTFNQSQYPRLCADDFVPLPCKGK 181
N KYGCNVPLLLMNSFNTHDDT KI+EKY+ SN++IHTFNQSQYPRL +DF+PLPCKG+
Sbjct: 129 NTKYGCNVPLLLMNSFNTHDDTLKIVEKYANSNIDIHTFNQSQYPRLVVEDFMPLPCKGQ 188
Query: 182 TDKDGWYPPGHGDVFPSLMNSGKLDALISQGKEYVFAANSDNLGAIVDLKILNHLIQNKN 241
T KDGWYPPGHGDVF SLMNSGKLDAL+SQGKEYVFAANSDNLGAIVDLKILNHL+ NKN
Sbjct: 189 TGKDGWYPPGHGDVFASLMNSGKLDALLSQGKEYVFAANSDNLGAIVDLKILNHLMTNKN 248
Query: 242 EYCMEVTPKTLADVKGGTLISYEGKVQLLEIAQVPDEHVNEFKSIEKFKIFNTNNLWVNL 301
EYCMEVTPKTLADVKGGTLISYEGKVQLLEIAQVPDEH+NEFKSIEKFKIFNTNNLWVNL
Sbjct: 249 EYCMEVTPKTLADVKGGTLISYEGKVQLLEIAQVPDEHINEFKSIEKFKIFNTNNLWVNL 308
Query: 302 KAIKRLVEADALKMEIIPNPKEVDGIKVLQLETAAGAAIRFFDHAIGCNVHRSRFLPVKA 361
KAIKRLVEA ALKMEIIPNPKEVDGIKVLQLETAAGAAI+FFD+AIG NV RSRFLPVKA
Sbjct: 309 KAIKRLVEAQALKMEIIPNPKEVDGIKVLQLETAAGAAIKFFDNAIGINVPRSRFLPVKA 368
Query: 362 TSDLLLVQSDLYTLADGFVTRNEARKNPANPTIELGPEFKKVGNFLSRFKSIPSIIELDS 421
TSDLLLVQSDLYTL DGFV RN+AR NP+NP+IELGPEFKKVGNFLSRFKSIPSIIELDS
Sbjct: 369 TSDLLLVQSDLYTLVDGFVERNKARTNPSNPSIELGPEFKKVGNFLSRFKSIPSIIELDS 428
Query: 422 LKVTGDVWFGANITLKGKVTIAAKSGEKLEIPDGAVLENKEINGPGDL 469
LKV+GDVWFG ITLKGKVTIAAK G KLEIPDG VLENKEI+GP DL
Sbjct: 429 LKVSGDVWFGTGITLKGKVTIAAKPGVKLEIPDGVVLENKEIHGPEDL 476
|
Source: Eucalyptus grandis Species: Eucalyptus grandis Genus: Eucalyptus Family: Myrtaceae Order: Myrtales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|255571289|ref|XP_002526594.1| utp-glucose-1-phosphate uridylyltransferase, putative [Ricinus communis] gi|223534088|gb|EEF35806.1| utp-glucose-1-phosphate uridylyltransferase, putative [Ricinus communis] | Back alignment and taxonomy information |
|---|
Score = 831 bits (2146), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 419/468 (89%), Positives = 442/468 (94%), Gaps = 1/468 (0%)
Query: 2 ATDAEKLTQLKSAVAGLNQISENEKNGFINLVARYLSGEAQHVEWSKIQTPTDKIVVPCD 61
ATD KLTQLKS+VA LNQISENEKNGFI+LVARYLSGEAQ VEWSKIQTPTD++VVP D
Sbjct: 4 ATD-NKLTQLKSSVAELNQISENEKNGFISLVARYLSGEAQQVEWSKIQTPTDEVVVPYD 62
Query: 62 SLAPVPEDPAETKKLLDKLVVLKLNGGLGTTMGCTGPKSVIEVRNGLTFLDLIVIQIENL 121
LAPVPEDPAETKKLLDKLVVLKLNGGLGTTMGCTGPKSVIEVRNGLTFLDLIVIQIENL
Sbjct: 63 ILAPVPEDPAETKKLLDKLVVLKLNGGLGTTMGCTGPKSVIEVRNGLTFLDLIVIQIENL 122
Query: 122 NAKYGCNVPLLLMNSFNTHDDTSKIIEKYSKSNVEIHTFNQSQYPRLCADDFVPLPCKGK 181
N+KYGC+VPLLLMNSFNTHDDT KIIEKYSKSN++IHTFNQSQYPRL +DF PLP KG+
Sbjct: 123 NSKYGCDVPLLLMNSFNTHDDTQKIIEKYSKSNIQIHTFNQSQYPRLVTEDFQPLPLKGQ 182
Query: 182 TDKDGWYPPGHGDVFPSLMNSGKLDALISQGKEYVFAANSDNLGAIVDLKILNHLIQNKN 241
+ KDGWYPPGHGDVFPSL NSGKLDAL+SQGKEYVFAANSDNLGAIVDLKILNHLI+NKN
Sbjct: 183 SGKDGWYPPGHGDVFPSLRNSGKLDALLSQGKEYVFAANSDNLGAIVDLKILNHLIRNKN 242
Query: 242 EYCMEVTPKTLADVKGGTLISYEGKVQLLEIAQVPDEHVNEFKSIEKFKIFNTNNLWVNL 301
EYCMEVTPKTLADVKGGTLISYEGKVQLLEIAQVPDEHVNEFKSIEKFKIFNTNNLWV+L
Sbjct: 243 EYCMEVTPKTLADVKGGTLISYEGKVQLLEIAQVPDEHVNEFKSIEKFKIFNTNNLWVSL 302
Query: 302 KAIKRLVEADALKMEIIPNPKEVDGIKVLQLETAAGAAIRFFDHAIGCNVHRSRFLPVKA 361
AIKRLVEADALKMEIIPNPKEVDG+KVLQLETAAGAAIRFFDHAIG NV RSRFLPVKA
Sbjct: 303 SAIKRLVEADALKMEIIPNPKEVDGVKVLQLETAAGAAIRFFDHAIGINVPRSRFLPVKA 362
Query: 362 TSDLLLVQSDLYTLADGFVTRNEARKNPANPTIELGPEFKKVGNFLSRFKSIPSIIELDS 421
TSDLLLVQSDLYTL GFV RN+ARKNPANP++ELGPEFKKV NFLSRFKSIPSIIELDS
Sbjct: 363 TSDLLLVQSDLYTLDGGFVIRNKARKNPANPSVELGPEFKKVANFLSRFKSIPSIIELDS 422
Query: 422 LKVTGDVWFGANITLKGKVTIAAKSGEKLEIPDGAVLENKEINGPGDL 469
LKV GDVWFGA + LKGKVTI+A+ G KLEIPDGAV+ENK+INGP DL
Sbjct: 423 LKVAGDVWFGAGVILKGKVTISAQPGVKLEIPDGAVVENKDINGPEDL 470
|
Source: Ricinus communis Species: Ricinus communis Genus: Ricinus Family: Euphorbiaceae Order: Malpighiales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|224135237|ref|XP_002327599.1| predicted protein [Populus trichocarpa] gi|222836153|gb|EEE74574.1| predicted protein [Populus trichocarpa] | Back alignment and taxonomy information |
|---|
Score = 830 bits (2145), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 414/469 (88%), Positives = 439/469 (93%)
Query: 1 MATDAEKLTQLKSAVAGLNQISENEKNGFINLVARYLSGEAQHVEWSKIQTPTDKIVVPC 60
MATD K++QLKSAVA LNQISE+EK GF+NLV+RYLSGEAQ VEWSKIQTPTD++VVP
Sbjct: 1 MATDTAKISQLKSAVANLNQISESEKTGFVNLVSRYLSGEAQQVEWSKIQTPTDEVVVPY 60
Query: 61 DSLAPVPEDPAETKKLLDKLVVLKLNGGLGTTMGCTGPKSVIEVRNGLTFLDLIVIQIEN 120
D+LAP PEDP ETKKLLDKLVVLKLNGGLGTTMGCTGPKSVIEVRNGLTFLDLIVIQIEN
Sbjct: 61 DTLAPTPEDPEETKKLLDKLVVLKLNGGLGTTMGCTGPKSVIEVRNGLTFLDLIVIQIEN 120
Query: 121 LNAKYGCNVPLLLMNSFNTHDDTSKIIEKYSKSNVEIHTFNQSQYPRLCADDFVPLPCKG 180
LN KYGC+VPLLLMNSFNTHDDT KI+EKYS SN+EIHTFNQSQYPRL DDFVPLP KG
Sbjct: 121 LNKKYGCSVPLLLMNSFNTHDDTQKIVEKYSNSNIEIHTFNQSQYPRLVVDDFVPLPSKG 180
Query: 181 KTDKDGWYPPGHGDVFPSLMNSGKLDALISQGKEYVFAANSDNLGAIVDLKILNHLIQNK 240
TDKDGWYPPGHGDVFPSL NSGKLDAL+S+GKEYVF ANSDNLGA+VDLKILNHLI+NK
Sbjct: 181 HTDKDGWYPPGHGDVFPSLKNSGKLDALLSKGKEYVFVANSDNLGAVVDLKILNHLIRNK 240
Query: 241 NEYCMEVTPKTLADVKGGTLISYEGKVQLLEIAQVPDEHVNEFKSIEKFKIFNTNNLWVN 300
NEYCMEVTPKTLADVKGGTLISY+GKVQLLEIAQVPD+HVNEFKSIEKFKIFNTNNLWVN
Sbjct: 241 NEYCMEVTPKTLADVKGGTLISYDGKVQLLEIAQVPDQHVNEFKSIEKFKIFNTNNLWVN 300
Query: 301 LKAIKRLVEADALKMEIIPNPKEVDGIKVLQLETAAGAAIRFFDHAIGCNVHRSRFLPVK 360
LKAIKRLVEADAL+MEIIPNPKEVDG+KVLQLETAAGAAI+FFDHAIG NV RSRFLPVK
Sbjct: 301 LKAIKRLVEADALEMEIIPNPKEVDGVKVLQLETAAGAAIKFFDHAIGINVPRSRFLPVK 360
Query: 361 ATSDLLLVQSDLYTLADGFVTRNEARKNPANPTIELGPEFKKVGNFLSRFKSIPSIIELD 420
ATSDLLLVQSDLYTL DGFV RN AR PANP+I+LGPE+KKV NFLSRFKSIPSIIELD
Sbjct: 361 ATSDLLLVQSDLYTLVDGFVIRNPARTIPANPSIDLGPEYKKVANFLSRFKSIPSIIELD 420
Query: 421 SLKVTGDVWFGANITLKGKVTIAAKSGEKLEIPDGAVLENKEINGPGDL 469
SLKV GDVWFGA ITLKGKV+I AKSG KLEIPDGAVL+NKEINGP DL
Sbjct: 421 SLKVVGDVWFGAGITLKGKVSIVAKSGVKLEIPDGAVLQNKEINGPEDL 469
|
Source: Populus trichocarpa Species: Populus trichocarpa Genus: Populus Family: Salicaceae Order: Malpighiales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|82659609|gb|ABB88893.1| UDP-glucose pyrophosphorylase [Populus tremula x Populus tremuloides] | Back alignment and taxonomy information |
|---|
Score = 829 bits (2141), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 414/469 (88%), Positives = 437/469 (93%)
Query: 1 MATDAEKLTQLKSAVAGLNQISENEKNGFINLVARYLSGEAQHVEWSKIQTPTDKIVVPC 60
MATD K++QLKSAVA L+QISE+EK GF+NLV+RYLSGEAQ VEWSKIQTPTD++VVP
Sbjct: 1 MATDTAKISQLKSAVANLDQISESEKTGFVNLVSRYLSGEAQQVEWSKIQTPTDEVVVPY 60
Query: 61 DSLAPVPEDPAETKKLLDKLVVLKLNGGLGTTMGCTGPKSVIEVRNGLTFLDLIVIQIEN 120
D+LAP PEDP ETKKLLDKLVVLKLNGGLGTTMGCTGPKSVIEVRNGLTFLDLIVIQIEN
Sbjct: 61 DTLAPTPEDPEETKKLLDKLVVLKLNGGLGTTMGCTGPKSVIEVRNGLTFLDLIVIQIEN 120
Query: 121 LNAKYGCNVPLLLMNSFNTHDDTSKIIEKYSKSNVEIHTFNQSQYPRLCADDFVPLPCKG 180
LN KYGC+VPLLLMNSFNTHDDT KI+EKYS SN+EIHTFNQSQYPRL DDFVPLP KG
Sbjct: 121 LNKKYGCSVPLLLMNSFNTHDDTQKIVEKYSNSNIEIHTFNQSQYPRLVVDDFVPLPSKG 180
Query: 181 KTDKDGWYPPGHGDVFPSLMNSGKLDALISQGKEYVFAANSDNLGAIVDLKILNHLIQNK 240
TDKDGWYPPGHGDVFPSL NSGKLD L+SQGKEYVF ANSDNLGA+VDLKILNHLI+NK
Sbjct: 181 HTDKDGWYPPGHGDVFPSLKNSGKLDDLLSQGKEYVFVANSDNLGAVVDLKILNHLIRNK 240
Query: 241 NEYCMEVTPKTLADVKGGTLISYEGKVQLLEIAQVPDEHVNEFKSIEKFKIFNTNNLWVN 300
NEYCMEVTPKTLADVKGGTLISYEGKVQLLEIAQVPD+HVNEFKSIEKFKIFNTNNLWVN
Sbjct: 241 NEYCMEVTPKTLADVKGGTLISYEGKVQLLEIAQVPDQHVNEFKSIEKFKIFNTNNLWVN 300
Query: 301 LKAIKRLVEADALKMEIIPNPKEVDGIKVLQLETAAGAAIRFFDHAIGCNVHRSRFLPVK 360
LKAIKRLVEADALKMEIIPNPKEVDG+KVLQLETAAGAAI+FFDHAIG N RSRFLPVK
Sbjct: 301 LKAIKRLVEADALKMEIIPNPKEVDGVKVLQLETAAGAAIKFFDHAIGINAPRSRFLPVK 360
Query: 361 ATSDLLLVQSDLYTLADGFVTRNEARKNPANPTIELGPEFKKVGNFLSRFKSIPSIIELD 420
ATSDLLLVQSDLYTL DGFV RN AR PANP+I+LGPE+KKV NFLSRFKSIPSIIELD
Sbjct: 361 ATSDLLLVQSDLYTLVDGFVIRNPARTIPANPSIDLGPEYKKVANFLSRFKSIPSIIELD 420
Query: 421 SLKVTGDVWFGANITLKGKVTIAAKSGEKLEIPDGAVLENKEINGPGDL 469
SLKV GDVWFGA ITLKGKV+I AKSG KLEIPDGAVL+NKEINGP DL
Sbjct: 421 SLKVAGDVWFGAGITLKGKVSIVAKSGVKLEIPDGAVLQNKEINGPEDL 469
|
Source: Populus tremula x Populus tremuloides Species: Populus tremula x Populus tremuloides Genus: Populus Family: Salicaceae Order: Malpighiales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|90820120|gb|ABD98820.1| UDP-glucose pyrophosphorylase [Cucumis melo] | Back alignment and taxonomy information |
|---|
Score = 828 bits (2140), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 412/466 (88%), Positives = 440/466 (94%)
Query: 4 DAEKLTQLKSAVAGLNQISENEKNGFINLVARYLSGEAQHVEWSKIQTPTDKIVVPCDSL 63
D EKL++LK++V+GL QISENEK+GFINLV+RYLSGEAQHVEWSKIQTPTD++VVP DSL
Sbjct: 11 DTEKLSKLKASVSGLTQISENEKSGFINLVSRYLSGEAQHVEWSKIQTPTDEVVVPYDSL 70
Query: 64 APVPEDPAETKKLLDKLVVLKLNGGLGTTMGCTGPKSVIEVRNGLTFLDLIVIQIENLNA 123
APVP DPAETKKLLDKLVVLKLNGGLGTTMGCTGPKSVIEVRNGLTFLDLIVIQIENLN+
Sbjct: 71 APVPNDPAETKKLLDKLVVLKLNGGLGTTMGCTGPKSVIEVRNGLTFLDLIVIQIENLNS 130
Query: 124 KYGCNVPLLLMNSFNTHDDTSKIIEKYSKSNVEIHTFNQSQYPRLCADDFVPLPCKGKTD 183
KYGCNVPLLLMNSFNTHDDT KIIEKY SNV+IHTFNQSQYPRL A+D++PLP KG+TD
Sbjct: 131 KYGCNVPLLLMNSFNTHDDTQKIIEKYKGSNVDIHTFNQSQYPRLVAEDYLPLPSKGRTD 190
Query: 184 KDGWYPPGHGDVFPSLMNSGKLDALISQGKEYVFAANSDNLGAIVDLKILNHLIQNKNEY 243
KDGWYPPGHGDVFPSL NSGKLDALI+QGKEYVF ANSDNLGA+VDL+ILNHLIQNKNEY
Sbjct: 191 KDGWYPPGHGDVFPSLKNSGKLDALIAQGKEYVFVANSDNLGAVVDLQILNHLIQNKNEY 250
Query: 244 CMEVTPKTLADVKGGTLISYEGKVQLLEIAQVPDEHVNEFKSIEKFKIFNTNNLWVNLKA 303
CMEVTPKTLADVKGGTLISYEGKVQLLEIAQVPDEHVNEFKSI+KFKIFNTNNLWVNLKA
Sbjct: 251 CMEVTPKTLADVKGGTLISYEGKVQLLEIAQVPDEHVNEFKSIQKFKIFNTNNLWVNLKA 310
Query: 304 IKRLVEADALKMEIIPNPKEVDGIKVLQLETAAGAAIRFFDHAIGCNVHRSRFLPVKATS 363
IKRLVEA+ALKMEIIPNPKEVDGIKVLQLETAAGAAIRFFDHAIG NV RSRFLPVKATS
Sbjct: 311 IKRLVEANALKMEIIPNPKEVDGIKVLQLETAAGAAIRFFDHAIGINVPRSRFLPVKATS 370
Query: 364 DLLLVQSDLYTLADGFVTRNEARKNPANPTIELGPEFKKVGNFLSRFKSIPSIIELDSLK 423
DLLLVQSDLYTL DGFV RN+ARK+P+NP+IELGPEFKKVGNFLSRFKSIPSIIELDSLK
Sbjct: 371 DLLLVQSDLYTLVDGFVLRNKARKDPSNPSIELGPEFKKVGNFLSRFKSIPSIIELDSLK 430
Query: 424 VTGDVWFGANITLKGKVTIAAKSGEKLEIPDGAVLENKEINGPGDL 469
V GDV FGA + LKGKVTI+AK G KL +PD AV+ NKEINGP D
Sbjct: 431 VVGDVSFGAGVVLKGKVTISAKPGTKLAVPDNAVIANKEINGPEDF 476
|
Source: Cucumis melo Species: Cucumis melo Genus: Cucumis Family: Cucurbitaceae Order: Cucurbitales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|32527831|gb|AAP86317.1| UDP-glucose pyrophosphorylase [Populus tremula x Populus tremuloides] | Back alignment and taxonomy information |
|---|
Score = 827 bits (2137), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 412/470 (87%), Positives = 436/470 (92%), Gaps = 1/470 (0%)
Query: 1 MATDAEKLTQLKSAVAGLNQISENEKNGFINLVARYLSGEAQHVEWSKIQTPTDKIVVPC 60
MATD EK++QLKSAVA LNQISE+EK GF+NLV+RYLSGEAQ VEWSKIQTPTD++VVP
Sbjct: 1 MATDTEKISQLKSAVANLNQISESEKTGFVNLVSRYLSGEAQQVEWSKIQTPTDEVVVPY 60
Query: 61 DSLAPVPEDPAETKKLLDKLVVLKLNGGLGTTMGCTGPKSVIEVRNGLTFLDLIVIQIEN 120
D+L PEDP ETK LLDKLVVLKLNGGLGTTMGCTGPKSVIEVRNGLTFLDLIVIQIE+
Sbjct: 61 DTLESTPEDPEETKMLLDKLVVLKLNGGLGTTMGCTGPKSVIEVRNGLTFLDLIVIQIES 120
Query: 121 LNAKYGCNVPLLLMNSFNTHDDTSKIIEKYSKSNVEIHTFNQSQYPRLCADDFVPLPCKG 180
LN KYGC+VPLLLMNSFNTHDDT KIIEKYS SN+EIHTFNQSQYPRL ADDFVPLP KG
Sbjct: 121 LNKKYGCSVPLLLMNSFNTHDDTQKIIEKYSNSNIEIHTFNQSQYPRLVADDFVPLPSKG 180
Query: 181 KTDKDGWYPPGHGDVFPSLMNSGKLDALISQGKEYVFAANSDNLGAIVDLKILNHLIQNK 240
TDKDGWYPPGHGDVFPSL NSGKLDAL+SQGKEYVF ANSDNLGA+VDLKILNHLI+NK
Sbjct: 181 HTDKDGWYPPGHGDVFPSLKNSGKLDALLSQGKEYVFVANSDNLGAVVDLKILNHLIRNK 240
Query: 241 NEYCMEVTPKTLADVKGGTLISYEGKVQLLEIAQVPDEHVNEFKSIEKFKIFNTNNLWVN 300
NEYCMEVTPKTLADVKGGTLISYEGKVQLLEIAQVPD+HVNEFKSIEKFKIFNTNNLWVN
Sbjct: 241 NEYCMEVTPKTLADVKGGTLISYEGKVQLLEIAQVPDQHVNEFKSIEKFKIFNTNNLWVN 300
Query: 301 LKAIKRLVEADALKMEIIPNPKEVDGIKVLQLETAAGAAIRFFDHAIGCNVHRSRFLPVK 360
LKAIKRLVEADALKMEIIPNPKEVDG+KVLQLETAAGAAIRFFDHAIG NV RSRFLPVK
Sbjct: 301 LKAIKRLVEADALKMEIIPNPKEVDGVKVLQLETAAGAAIRFFDHAIGINVPRSRFLPVK 360
Query: 361 ATSDLLLVQSDLYT-LADGFVTRNEARKNPANPTIELGPEFKKVGNFLSRFKSIPSIIEL 419
A+SDLLLVQSD+YT + DGFV RN R NPANP+IELGPEFKKV +FLSRFKSIPSIIEL
Sbjct: 361 ASSDLLLVQSDIYTPVVDGFVIRNPGRANPANPSIELGPEFKKVASFLSRFKSIPSIIEL 420
Query: 420 DSLKVTGDVWFGANITLKGKVTIAAKSGEKLEIPDGAVLENKEINGPGDL 469
DSLKV GDVWFG N+TLKGKV+I KSG KLEIP+G VLENKEINGP DL
Sbjct: 421 DSLKVAGDVWFGVNVTLKGKVSIVVKSGVKLEIPEGVVLENKEINGPKDL 470
|
Source: Populus tremula x Populus tremuloides Species: Populus tremula x Populus tremuloides Genus: Populus Family: Salicaceae Order: Malpighiales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|449456208|ref|XP_004145842.1| PREDICTED: UTP--glucose-1-phosphate uridylyltransferase-like [Cucumis sativus] gi|449496362|ref|XP_004160114.1| PREDICTED: UTP--glucose-1-phosphate uridylyltransferase-like [Cucumis sativus] | Back alignment and taxonomy information |
|---|
Score = 822 bits (2123), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 409/466 (87%), Positives = 437/466 (93%)
Query: 4 DAEKLTQLKSAVAGLNQISENEKNGFINLVARYLSGEAQHVEWSKIQTPTDKIVVPCDSL 63
D EKL++LK+AV+GL QISENEK+GFINLV+RYLSGEAQHVEWSKIQTPTD++VVP DSL
Sbjct: 11 DTEKLSKLKAAVSGLTQISENEKSGFINLVSRYLSGEAQHVEWSKIQTPTDEVVVPYDSL 70
Query: 64 APVPEDPAETKKLLDKLVVLKLNGGLGTTMGCTGPKSVIEVRNGLTFLDLIVIQIENLNA 123
APV DPAETKKLLDKLVVLKLNGGLGTTMGCTGPKSVIEVRNGLTFLDLIVIQIENLN+
Sbjct: 71 APVSNDPAETKKLLDKLVVLKLNGGLGTTMGCTGPKSVIEVRNGLTFLDLIVIQIENLNS 130
Query: 124 KYGCNVPLLLMNSFNTHDDTSKIIEKYSKSNVEIHTFNQSQYPRLCADDFVPLPCKGKTD 183
KYGCNVPLLLMNSFNTHDDT KIIEKY SNV+IHTFNQSQYPRL DD++PLP KG+TD
Sbjct: 131 KYGCNVPLLLMNSFNTHDDTQKIIEKYKGSNVDIHTFNQSQYPRLVVDDYLPLPSKGRTD 190
Query: 184 KDGWYPPGHGDVFPSLMNSGKLDALISQGKEYVFAANSDNLGAIVDLKILNHLIQNKNEY 243
KDGWYPPGHGDVFPSL NSGKLDALI+QGKEYVF ANSDNLGA+VDL+ILNHLI+NKNEY
Sbjct: 191 KDGWYPPGHGDVFPSLKNSGKLDALIAQGKEYVFVANSDNLGAVVDLQILNHLIRNKNEY 250
Query: 244 CMEVTPKTLADVKGGTLISYEGKVQLLEIAQVPDEHVNEFKSIEKFKIFNTNNLWVNLKA 303
CMEVTPKTLADVKGGTLISYEGKVQLLEIAQVPDEHVNEFKSI+KFKIFNTNNLWVNLKA
Sbjct: 251 CMEVTPKTLADVKGGTLISYEGKVQLLEIAQVPDEHVNEFKSIQKFKIFNTNNLWVNLKA 310
Query: 304 IKRLVEADALKMEIIPNPKEVDGIKVLQLETAAGAAIRFFDHAIGCNVHRSRFLPVKATS 363
IKRLVEA+ALKMEIIPNPKEVDGIKVLQLETAAGAAIRFFDHAIG NV RSRFLPVKATS
Sbjct: 311 IKRLVEANALKMEIIPNPKEVDGIKVLQLETAAGAAIRFFDHAIGINVPRSRFLPVKATS 370
Query: 364 DLLLVQSDLYTLADGFVTRNEARKNPANPTIELGPEFKKVGNFLSRFKSIPSIIELDSLK 423
DLLLVQSDLYTL DGFV RN ARK+P+NP+IELGPEFKKVGNFLSRFKSIPSIIELDSLK
Sbjct: 371 DLLLVQSDLYTLVDGFVLRNNARKDPSNPSIELGPEFKKVGNFLSRFKSIPSIIELDSLK 430
Query: 424 VTGDVWFGANITLKGKVTIAAKSGEKLEIPDGAVLENKEINGPGDL 469
V GDV FG+ + LKGKVTI+AK G KL +PD A++ NKEINGP D
Sbjct: 431 VVGDVSFGSGVVLKGKVTISAKPGTKLAVPDNALIANKEINGPEDF 476
|
Source: Cucumis sativus Species: Cucumis sativus Genus: Cucumis Family: Cucurbitaceae Order: Cucurbitales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|308445439|gb|ADO32901.1| UDP-glucose pyrophosphorylase [Gossypium hirsutum] | Back alignment and taxonomy information |
|---|
Score = 821 bits (2120), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 410/464 (88%), Positives = 434/464 (93%)
Query: 6 EKLTQLKSAVAGLNQISENEKNGFINLVARYLSGEAQHVEWSKIQTPTDKIVVPCDSLAP 65
EKL LKSAVA L++ISENEKNGFINLV+RYLSGEAQH+EWSKIQTPTD++VVP D+L+P
Sbjct: 2 EKLEHLKSAVAALSEISENEKNGFINLVSRYLSGEAQHIEWSKIQTPTDEVVVPYDTLSP 61
Query: 66 VPEDPAETKKLLDKLVVLKLNGGLGTTMGCTGPKSVIEVRNGLTFLDLIVIQIENLNAKY 125
P+DPAETKKLLDKLVVLKLNGGLGTTMGCTGPKSVIEVRNGLTFLDLIVIQIENLN+KY
Sbjct: 62 SPDDPAETKKLLDKLVVLKLNGGLGTTMGCTGPKSVIEVRNGLTFLDLIVIQIENLNSKY 121
Query: 126 GCNVPLLLMNSFNTHDDTSKIIEKYSKSNVEIHTFNQSQYPRLCADDFVPLPCKGKTDKD 185
GCNVPL+LMNSFNTHDDT KI++KYS SN+EIHTFNQSQYPRL +DF PLP KG+ KD
Sbjct: 122 GCNVPLVLMNSFNTHDDTLKIVDKYSNSNIEIHTFNQSQYPRLVVEDFAPLPSKGQHGKD 181
Query: 186 GWYPPGHGDVFPSLMNSGKLDALISQGKEYVFAANSDNLGAIVDLKILNHLIQNKNEYCM 245
GWYPPGHGDVFPSLMNSGKLDA +SQGKEYVF ANSDNLGAIVDLKILNHL+QNKNEYCM
Sbjct: 182 GWYPPGHGDVFPSLMNSGKLDAFLSQGKEYVFVANSDNLGAIVDLKILNHLVQNKNEYCM 241
Query: 246 EVTPKTLADVKGGTLISYEGKVQLLEIAQVPDEHVNEFKSIEKFKIFNTNNLWVNLKAIK 305
EVTPKTLADVKGGTLISYEGKVQLLEIAQVPDEHVNEFKSIEKFKIFNTNNLWVNL AIK
Sbjct: 242 EVTPKTLADVKGGTLISYEGKVQLLEIAQVPDEHVNEFKSIEKFKIFNTNNLWVNLNAIK 301
Query: 306 RLVEADALKMEIIPNPKEVDGIKVLQLETAAGAAIRFFDHAIGCNVHRSRFLPVKATSDL 365
RLVEAD LKMEIIPNPKEV+GIKVLQLETAAGAAIRFFDHAIG NV RSRFLPVKATSDL
Sbjct: 302 RLVEADELKMEIIPNPKEVNGIKVLQLETAAGAAIRFFDHAIGINVPRSRFLPVKATSDL 361
Query: 366 LLVQSDLYTLADGFVTRNEARKNPANPTIELGPEFKKVGNFLSRFKSIPSIIELDSLKVT 425
LLVQSDLYTL DGFV RN+ R NP NP+IELGPEFKKVGNFLSRFKSIPSII LDSLKVT
Sbjct: 362 LLVQSDLYTLVDGFVIRNKDRANPTNPSIELGPEFKKVGNFLSRFKSIPSIIGLDSLKVT 421
Query: 426 GDVWFGANITLKGKVTIAAKSGEKLEIPDGAVLENKEINGPGDL 469
GDVWFGA I LKGKV+IAAK G KLEIPDGAV+ENKEINGP D+
Sbjct: 422 GDVWFGAGIVLKGKVSIAAKPGVKLEIPDGAVIENKEINGPEDI 465
|
Source: Gossypium hirsutum Species: Gossypium hirsutum Genus: Gossypium Family: Malvaceae Order: Malvales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|211906436|gb|ACJ11711.1| UDP-D-glucose pyrophosphorylase [Gossypium hirsutum] | Back alignment and taxonomy information |
|---|
Score = 820 bits (2117), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 409/464 (88%), Positives = 434/464 (93%)
Query: 6 EKLTQLKSAVAGLNQISENEKNGFINLVARYLSGEAQHVEWSKIQTPTDKIVVPCDSLAP 65
EKL LKSAVA L++ISENEKNGFINLV+RYLSGEAQH+EWSKIQTPTD++VVP D+L+P
Sbjct: 2 EKLEHLKSAVAALSEISENEKNGFINLVSRYLSGEAQHIEWSKIQTPTDEVVVPYDTLSP 61
Query: 66 VPEDPAETKKLLDKLVVLKLNGGLGTTMGCTGPKSVIEVRNGLTFLDLIVIQIENLNAKY 125
P+DPAETKKLLDKLVVLKLNGGLGTTMGCTGPKSVIEVRNGLTFLDLIVIQIENLN+KY
Sbjct: 62 SPDDPAETKKLLDKLVVLKLNGGLGTTMGCTGPKSVIEVRNGLTFLDLIVIQIENLNSKY 121
Query: 126 GCNVPLLLMNSFNTHDDTSKIIEKYSKSNVEIHTFNQSQYPRLCADDFVPLPCKGKTDKD 185
GCNVPL+LMNSFNTHDDT KI++KYS SN+EIHTFNQSQYPRL +DF PLP KG+ KD
Sbjct: 122 GCNVPLVLMNSFNTHDDTLKIVDKYSNSNIEIHTFNQSQYPRLVVEDFAPLPSKGQHGKD 181
Query: 186 GWYPPGHGDVFPSLMNSGKLDALISQGKEYVFAANSDNLGAIVDLKILNHLIQNKNEYCM 245
GWYPPGHGDVFPSLMNSGKLDA +SQGKEYVF ANSDNLGAIVD+KILNHL+QNKNEYCM
Sbjct: 182 GWYPPGHGDVFPSLMNSGKLDAFLSQGKEYVFVANSDNLGAIVDMKILNHLVQNKNEYCM 241
Query: 246 EVTPKTLADVKGGTLISYEGKVQLLEIAQVPDEHVNEFKSIEKFKIFNTNNLWVNLKAIK 305
EVTPKTLADVKGGTLISYEGKVQLLEIAQVPDEHVNEFKSIEKFKIFNTNNLWVNL AIK
Sbjct: 242 EVTPKTLADVKGGTLISYEGKVQLLEIAQVPDEHVNEFKSIEKFKIFNTNNLWVNLNAIK 301
Query: 306 RLVEADALKMEIIPNPKEVDGIKVLQLETAAGAAIRFFDHAIGCNVHRSRFLPVKATSDL 365
RLVEADALKMEIIPNPKEV+GIKVLQLETAAGAAIRFFDHAIG NV RSRFLPVKATSDL
Sbjct: 302 RLVEADALKMEIIPNPKEVNGIKVLQLETAAGAAIRFFDHAIGINVPRSRFLPVKATSDL 361
Query: 366 LLVQSDLYTLADGFVTRNEARKNPANPTIELGPEFKKVGNFLSRFKSIPSIIELDSLKVT 425
LLVQSDLYTL DGFV RN+ R NP NP+IELGPEFKKVGNFLSRFKSIPSIIELDSLKVT
Sbjct: 362 LLVQSDLYTLVDGFVIRNKDRANPTNPSIELGPEFKKVGNFLSRFKSIPSIIELDSLKVT 421
Query: 426 GDVWFGANITLKGKVTIAAKSGEKLEIPDGAVLENKEINGPGDL 469
GDVWFGA I LKGKV+IAAK G KLEIPDGAV+E KEIN P D+
Sbjct: 422 GDVWFGAGIVLKGKVSIAAKPGVKLEIPDGAVIEKKEINVPEDI 465
|
Source: Gossypium hirsutum Species: Gossypium hirsutum Genus: Gossypium Family: Malvaceae Order: Malvales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
Prediction of Gene Ontology (GO) Terms
Close Homologs with Gene Ontology terms Detected by BLAST 
Original result of BLAST against Gene Ontology (AMIGO)
ID ![]() |
Alignment graph ![]() |
Length ![]() |
Definition ![]() |
Q cover ![]() |
H cover ![]() |
Identity ![]() |
E-value ![]() |
| Query | 469 | ||||||
| TAIR|locus:2167220 | 470 | UGP2 "AT5G17310" [Arabidopsis | 0.997 | 0.995 | 0.822 | 2.3e-206 | |
| TAIR|locus:2097785 | 469 | UGP1 "AT3G03250" [Arabidopsis | 1.0 | 1.0 | 0.808 | 1.3e-203 | |
| ZFIN|ZDB-GENE-090311-46 | 507 | ugp2a "UDP-glucose pyrophospho | 0.985 | 0.911 | 0.526 | 1.7e-123 | |
| ZFIN|ZDB-GENE-030131-6352 | 554 | ugp2b "UDP-glucose pyrophospho | 0.980 | 0.830 | 0.522 | 4.4e-123 | |
| SGD|S000001518 | 499 | UGP1 "UDP-glucose pyrophosphor | 0.933 | 0.877 | 0.538 | 8.5e-120 | |
| UNIPROTKB|G4MUC5 | 529 | MGG_01631 "UTP-glucose-1-phosp | 0.963 | 0.854 | 0.522 | 2.9e-119 | |
| UNIPROTKB|F1NNR1 | 508 | UGP2 "Uncharacterized protein" | 0.955 | 0.881 | 0.524 | 7.7e-119 | |
| UNIPROTKB|E2R5R9 | 508 | UGP2 "Uncharacterized protein" | 0.942 | 0.870 | 0.523 | 9.8e-119 | |
| UNIPROTKB|F1Q1Q8 | 497 | UGP2 "Uncharacterized protein" | 0.942 | 0.889 | 0.523 | 9.8e-119 | |
| UNIPROTKB|F1LQ84 | 507 | Ugp2 "Protein Ugp2" [Rattus no | 0.972 | 0.899 | 0.511 | 9.8e-119 |
| TAIR|locus:2167220 UGP2 "AT5G17310" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 1996 (707.7 bits), Expect = 2.3e-206, P = 2.3e-206
Identities = 385/468 (82%), Positives = 414/468 (88%)
Query: 2 ATDAEKLTQLKSAVAGLNQISENEKNGFINLVARYLSGEAQHVEWSKIQTPTDKIVVPCD 61
AT EKL QLKSAV GL ++SENEK+GFINLV+RYLSGEAQH+EWSKIQTPTD+IVVP D
Sbjct: 3 ATATEKLPQLKSAVDGLTEMSENEKSGFINLVSRYLSGEAQHIEWSKIQTPTDEIVVPYD 62
Query: 62 SLAPVPEDPAEXXXXXXXXXXXXXXXXXXXXMGCTGPKSVIEVRNGLTFLDLIVIQIENL 121
+A V ED +E MGCTGPKSVIEVR+GLTFLDLIVIQIENL
Sbjct: 63 KMANVSEDASETKYLLDKLVVLKLNGGLGTTMGCTGPKSVIEVRDGLTFLDLIVIQIENL 122
Query: 122 NAKYGCNVPLLLMNSFNTHDDTSKIIEKYSKSNVEIHTFNQSQYPRLCADDFVPLPCKGK 181
N KY C VPL+LMNSFNTHDDT KI+EKY+KSNV+IHTFNQS+YPR+ AD+FVP P KGK
Sbjct: 123 NNKYNCKVPLVLMNSFNTHDDTQKIVEKYTKSNVDIHTFNQSKYPRVVADEFVPWPSKGK 182
Query: 182 TDKDGWYPPGHGDVFPSLMNSGKLDALISQGKEYVFAANSDNLGAIVDLKILNHLIQNKN 241
TDKDGWYPPGHGDVFPSLMNSGKLDA +SQGKEYVF ANSDNLGAIVDLKIL HLIQNKN
Sbjct: 183 TDKDGWYPPGHGDVFPSLMNSGKLDAFLSQGKEYVFIANSDNLGAIVDLKILKHLIQNKN 242
Query: 242 EYCMEVTPKTLADVKGGTLISYEGKVQLLEIAQVPDEHVNEFKSIEKFKIFNTNNLWVNL 301
EYCMEVTPKTLADVKGGTLISYEGKVQLLEIAQVPDEHVNEFKSIEKFKIFNTNNLWVNL
Sbjct: 243 EYCMEVTPKTLADVKGGTLISYEGKVQLLEIAQVPDEHVNEFKSIEKFKIFNTNNLWVNL 302
Query: 302 KAIKRLVEADALKMEIIPNPKEVDGIKVLQLETAAGAAIRFFDHAIGCNVHRSRFLPVKA 361
KAIK+LVEADALKMEIIPNPKEVDG+KVLQLETAAGAAIRFFD+AIG NV RSRFLPVKA
Sbjct: 303 KAIKKLVEADALKMEIIPNPKEVDGVKVLQLETAAGAAIRFFDNAIGVNVPRSRFLPVKA 362
Query: 362 TSDLLLVQSDLYTLADGFVTRNEARKNPANPTIELGPEFKKVGNFLSRFKSIPSIIELDS 421
TSDLLLVQSDLYTL DGFVTRN+AR NP NP IELGPEFKKV +FLSRFKSIPSI+ELDS
Sbjct: 363 TSDLLLVQSDLYTLVDGFVTRNKARTNPTNPAIELGPEFKKVASFLSRFKSIPSIVELDS 422
Query: 422 LKVTGDVWFGANITLKGKVTIAAKSGEKLEIPDGAVLENKEINGPGDL 469
LKV+GDVWFG+ + LKGKVT+ A +G KLEIPD AVLENK+INGP DL
Sbjct: 423 LKVSGDVWFGSGVVLKGKVTVKANAGTKLEIPDNAVLENKDINGPEDL 470
|
|
| TAIR|locus:2097785 UGP1 "AT3G03250" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 1970 (698.5 bits), Expect = 1.3e-203, P = 1.3e-203
Identities = 379/469 (80%), Positives = 414/469 (88%)
Query: 1 MATDAEKLTQLKSAVAGLNQISENEKNGFINLVARYLSGEAQHVEWSKIQTPTDKIVVPC 60
MA E L QLKSAV GL ++SE+EK+GFI+LV+RYLSGEAQH+EWSKIQTPTD+IVVP
Sbjct: 1 MAATTENLPQLKSAVDGLTEMSESEKSGFISLVSRYLSGEAQHIEWSKIQTPTDEIVVPY 60
Query: 61 DSLAPVPEDPAEXXXXXXXXXXXXXXXXXXXXMGCTGPKSVIEVRNGLTFLDLIVIQIEN 120
+ + PV +D AE MGCTGPKSVIEVR+GLTFLDLIVIQIEN
Sbjct: 61 EKMTPVSQDVAETKNLLDKLVVLKLNGGLGTTMGCTGPKSVIEVRDGLTFLDLIVIQIEN 120
Query: 121 LNAKYGCNVPLLLMNSFNTHDDTSKIIEKYSKSNVEIHTFNQSQYPRLCADDFVPLPCKG 180
LN KYGC VPL+LMNSFNTHDDT KI+EKY+ SNV+IHTFNQS+YPR+ AD+FVP P KG
Sbjct: 121 LNNKYGCKVPLVLMNSFNTHDDTHKIVEKYTNSNVDIHTFNQSKYPRVVADEFVPWPSKG 180
Query: 181 KTDKDGWYPPGHGDVFPSLMNSGKLDALISQGKEYVFAANSDNLGAIVDLKILNHLIQNK 240
KTDK+GWYPPGHGDVFP+LMNSGKLD +SQGKEYVF ANSDNLGAIVDL IL HLIQNK
Sbjct: 181 KTDKEGWYPPGHGDVFPALMNSGKLDTFLSQGKEYVFVANSDNLGAIVDLTILKHLIQNK 240
Query: 241 NEYCMEVTPKTLADVKGGTLISYEGKVQLLEIAQVPDEHVNEFKSIEKFKIFNTNNLWVN 300
NEYCMEVTPKTLADVKGGTLISYEGKVQLLEIAQVPDEHVNEFKSIEKFKIFNTNNLWVN
Sbjct: 241 NEYCMEVTPKTLADVKGGTLISYEGKVQLLEIAQVPDEHVNEFKSIEKFKIFNTNNLWVN 300
Query: 301 LKAIKRLVEADALKMEIIPNPKEVDGIKVLQLETAAGAAIRFFDHAIGCNVHRSRFLPVK 360
LKAIK+LVEADALKMEIIPNPKEVDG+KVLQLETAAGAAIRFFD+AIG NV RSRFLPVK
Sbjct: 301 LKAIKKLVEADALKMEIIPNPKEVDGVKVLQLETAAGAAIRFFDNAIGVNVPRSRFLPVK 360
Query: 361 ATSDLLLVQSDLYTLADGFVTRNEARKNPANPTIELGPEFKKVGNFLSRFKSIPSIIELD 420
A+SDLLLVQSDLYTL DGFVTRN+AR NP+NP+IELGPEFKKV FLSRFKSIPSI+ELD
Sbjct: 361 ASSDLLLVQSDLYTLVDGFVTRNKARTNPSNPSIELGPEFKKVATFLSRFKSIPSIVELD 420
Query: 421 SLKVTGDVWFGANITLKGKVTIAAKSGEKLEIPDGAVLENKEINGPGDL 469
SLKV+GDVWFG++I LKGKVT+AAKSG KLEIPD AV+ENK INGP DL
Sbjct: 421 SLKVSGDVWFGSSIVLKGKVTVAAKSGVKLEIPDRAVVENKNINGPEDL 469
|
|
| ZFIN|ZDB-GENE-090311-46 ugp2a "UDP-glucose pyrophosphorylase 2a" [Danio rerio (taxid:7955)] | Back alignment and assigned GO terms |
|---|
Score = 1214 (432.4 bits), Expect = 1.7e-123, P = 1.7e-123
Identities = 249/473 (52%), Positives = 325/473 (68%)
Query: 1 MATDAEKLTQLKSAVAGLNQISENEKNGFINLVARYLSGEAQHVEWSKIQTPTDKIVVPC 60
M T+ EKL L +A +IS + GF L R+L + V+W+KIQ P + + P
Sbjct: 31 MHTELEKL--LSTAKTPEAEISRKDFEGFKKLFHRFLQEKGPSVDWAKIQRPPEDSIQPY 88
Query: 61 DSLAPVPEDPAEXXXXXXXXXXXXXXXXXXXXMGCTGPKSVIEVRNGLTFLDLIVIQIEN 120
+ + + PA+ MGC GPKS+I VRN TFLDL V QIE+
Sbjct: 89 EKIK-LKGLPADVASSLNKLAVLKLNGGLGTSMGCKGPKSLISVRNENTFLDLTVQQIEH 147
Query: 121 LNAKYGCNVPLLLMNSFNTHDDTSKIIEKYSKSNVEIHTFNQSQYPRLCADDFVPLPCK- 179
LN Y +VPL+LMNSFNT +DT KI++KY+ V+IHTFNQS+YPR+ + +P+
Sbjct: 148 LNKTYNADVPLVLMNSFNTDEDTKKILQKYTHHRVKIHTFNQSRYPRINKESLLPVATNM 207
Query: 180 GKT--DKDGWYPPGHGDVFPSLMNSGKLDALISQGKEYVFAANSDNLGAIVDLKILNHLI 237
G T +++ WYPPGHGD++ S NSG LD LI++GKEY+F +N DNLGA VDL ILNHL+
Sbjct: 208 GLTGENEEAWYPPGHGDIYASFYNSGLLDKLIAEGKEYIFVSNIDNLGATVDLHILNHLM 267
Query: 238 QNKN----EYCMEVTPKTLADVKGGTLISYEGKVQLLEIAQVPDEHVNEFKSIEKFKIFN 293
N E+ MEVT KT ADVKGGTL Y+GK++LLEIAQVP HV+EFKS+ KFKIFN
Sbjct: 268 SQPNDKRCEFVMEVTDKTRADVKGGTLTQYDGKLRLLEIAQVPKAHVDEFKSVTKFKIFN 327
Query: 294 TNNLWVNLKAIKRLVEADALKMEIIPNPKEVDG-IKVLQLETAAGAAIRFFDHAIGCNVH 352
TNNLW++L AIKRL E +A+ MEII NPK +DG + V+QLETA GAA++ FD+A+G NV
Sbjct: 328 TNNLWMSLPAIKRLHEKNAMDMEIIVNPKTLDGGLNVIQLETAVGAAMKSFDNALGINVP 387
Query: 353 RSRFLPVKATSDLLLVQSDLYTLADGFVTRNEARKNPANPTIELGPEFKKVGNFLSRFKS 412
RSRFLPVK TSDLLLV S+LY++ G +T + R+ P P ++LG F KV +FL RF+S
Sbjct: 388 RSRFLPVKTTSDLLLVMSNLYSMNAGSLTMSPKREFPTTPHVKLGSSFTKVRDFLKRFES 447
Query: 413 IPSIIELDSLKVTGDVWFGANITLKGKVTIAAKSGEKLEIPDGAVLENKEING 465
IP ++ELD L V+GDV FG +TLKG V I A G++++IP GA+LENK ++G
Sbjct: 448 IPDMLELDHLTVSGDVTFGKQLTLKGTVIIIANHGDRIDIPAGAMLENKIVSG 500
|
|
| ZFIN|ZDB-GENE-030131-6352 ugp2b "UDP-glucose pyrophosphorylase 2b" [Danio rerio (taxid:7955)] | Back alignment and assigned GO terms |
|---|
Score = 1210 (431.0 bits), Expect = 4.4e-123, P = 4.4e-123
Identities = 248/475 (52%), Positives = 328/475 (69%)
Query: 1 MATDAEKLTQLKSAVAGLNQISENEKNGFINLVARYLSGEAQHVEWSKIQTPTDKIVVPC 60
M + EKL L +A ++S+ + GF L R+L + VEW KI P + + P
Sbjct: 78 MHVELEKL--LSTAKGAGAEVSKKDFEGFRKLFHRFLQVKGPSVEWPKINRPPEDSIQPY 135
Query: 61 DSLAP--VPEDPAEXXXXXXXXXXXXXXXXXXXXMGCTGPKSVIEVRNGLTFLDLIVIQI 118
D + +P++ A+ MGC GPKS+I VRN TFLDL V QI
Sbjct: 136 DKIKAKGLPDNIADSLNKLVVVKLNGGLGTS---MGCKGPKSLISVRNENTFLDLTVQQI 192
Query: 119 ENLNAKYGCNVPLLLMNSFNTHDDTSKIIEKYSKSNVEIHTFNQSQYPRLCADDFVPLPC 178
E+LN Y +VPL+LMNSFNT +DT KI++KY+ V+IHTFNQS+YPR+ + +P+
Sbjct: 193 EHLNKTYNADVPLVLMNSFNTDEDTKKILQKYTHHRVKIHTFNQSRYPRINKESLLPVAK 252
Query: 179 K-GKTDKDG--WYPPGHGDVFPSLMNSGKLDALISQGKEYVFAANSDNLGAIVDLKILNH 235
G T ++G WYPPGHGD++ S NSG L+ LI++GKEY+F +N DNLGA VDL ILNH
Sbjct: 253 DMGMTGENGDVWYPPGHGDIYASFYNSGLLEQLIAEGKEYIFVSNIDNLGATVDLYILNH 312
Query: 236 LIQNKN----EYCMEVTPKTLADVKGGTLISYEGKVQLLEIAQVPDEHVNEFKSIEKFKI 291
L+ N E+ MEVT KT ADVKGGTLI Y+GK++LLEIAQVP HV+EFKS+ KFKI
Sbjct: 313 LVSQPNGKRCEFIMEVTDKTRADVKGGTLIQYDGKLRLLEIAQVPKAHVDEFKSVTKFKI 372
Query: 292 FNTNNLWVNLKAIKRLVEADALKMEIIPNPKEVDG-IKVLQLETAAGAAIRFFDHAIGCN 350
FNTNNLW++L AIKRL E +A+ MEII NPK +DG + V+QLETA GAAI+ FD+A+G N
Sbjct: 373 FNTNNLWISLSAIKRLQEQNAMDMEIIVNPKTIDGGLNVIQLETAVGAAIKCFDNALGIN 432
Query: 351 VHRSRFLPVKATSDLLLVQSDLYTLADGFVTRNEARKNPANPTIELGPEFKKVGNFLSRF 410
V RSRFLPVK TSDLLLV S+LY+L G +T +E R+ P P ++LG F KV +++RF
Sbjct: 433 VPRSRFLPVKTTSDLLLVMSNLYSLDAGSLTMSEKREFPTTPHVKLGSSFTKVQEYITRF 492
Query: 411 KSIPSIIELDSLKVTGDVWFGANITLKGKVTIAAKSGEKLEIPDGAVLENKEING 465
+SIP ++ELD L V+GDV FG +++LKG V I A G++++IP G++LENK ++G
Sbjct: 493 ESIPDMLELDHLTVSGDVTFGKHVSLKGTVIIIANHGDRIDIPAGSMLENKIVSG 547
|
|
| SGD|S000001518 UGP1 "UDP-glucose pyrophosphorylase (UGPase)" [Saccharomyces cerevisiae (taxid:4932)] | Back alignment and assigned GO terms |
|---|
Score = 1179 (420.1 bits), Expect = 8.5e-120, P = 8.5e-120
Identities = 242/449 (53%), Positives = 309/449 (68%)
Query: 23 ENEKNGFINLVARYLSGEAQH--VEWSKIQTPTDKIVVPCDSLAPVPEDPAEXXXXXXXX 80
ENE + F L RYL ++ +EW KI++P VV + ++ PE+ +
Sbjct: 49 ENELDSFFTLFRRYLVEKSSRTTLEWDKIKSPNPDEVVKYEIISQQPENVSNLSKLAVLK 108
Query: 81 XXXXXXXXXXXXMGCTGPKSVIEVRNGLTFLDLIVIQIENLNAKYGCNVPLLLMNSFNTH 140
MGC GPKSVIEVR G TFLDL V QIE LN +Y +VPLLLMNSFNT
Sbjct: 109 LNGGLGTS----MGCVGPKSVIEVREGNTFLDLSVRQIEYLNRQYDSDVPLLLMNSFNTD 164
Query: 141 DDTSKIIEKYSKSNVEIHTFNQSQYPRLCADDFVPLPCKGKTDKDGWYPPGHGDVFPSLM 200
DT +I+KYS + + I +FNQS++PR+ D +P+P + + D WYPPGHGD+F SL
Sbjct: 165 KDTEHLIKKYSANRIRIRSFNQSRFPRVYKDSLLPVPTEYDSPLDAWYPPGHGDLFESLH 224
Query: 201 NSGKLDALISQGKEYVFAANSDNLGAIVDLKILNHLIQNKNEYCMEVTPKTLADVKGGTL 260
SG+LDALI+QG+E +F +N DNLGA VDLKILNH+I+ EY ME+T KT ADVKGGTL
Sbjct: 225 VSGELDALIAQGREILFVSNGDNLGATVDLKILNHMIETGAEYIMELTDKTRADVKGGTL 284
Query: 261 ISYEGKVQLLEIAQVPDEHVNEFKSIEKFKIFNTNNLWVNLKAIKRLVEADALKMEIIPN 320
ISY+G+V+LLE+AQVP EH++EFK+I KF FNTNNLW+NLKA+KRL+E+ L+MEIIPN
Sbjct: 285 ISYDGQVRLLEVAQVPKEHIDEFKNIRKFTNFNTNNLWINLKAVKRLIESSNLEMEIIPN 344
Query: 321 PKEV--DG--IKVLQLETAAGAAIRFFDHAIGCNVHRSRFLPVKATSDLLLVQSDLYTLA 376
K + DG I VLQLETA GAAIR FD A G V RSRFLPVK SDLLLV+SDL+ L
Sbjct: 345 QKTITRDGHEINVLQLETACGAAIRHFDGAHGVVVPRSRFLPVKTCSDLLLVKSDLFRLE 404
Query: 377 DGFVTRNEARKNPANPTIELGPEFKKVGNFLSRFKSIPSIIELDSLKVTGDVWFGANITL 436
G + + +R P NP I+LG FKKV F +R IP I+ELD L +TG+V+ G ++TL
Sbjct: 405 HGSLKLDPSRFGP-NPLIKLGSHFKKVSGFNARIPHIPKIVELDHLTITGNVFLGKDVTL 463
Query: 437 KGKVTIAAKSGEKLEIPDGAVLENKEING 465
+G V I G K++IP+G++LEN + G
Sbjct: 464 RGTVIIVCSDGHKIDIPNGSILENVVVTG 492
|
|
| UNIPROTKB|G4MUC5 MGG_01631 "UTP-glucose-1-phosphate uridylyltransferase" [Magnaporthe oryzae 70-15 (taxid:242507)] | Back alignment and assigned GO terms |
|---|
Score = 1174 (418.3 bits), Expect = 2.9e-119, P = 2.9e-119
Identities = 245/469 (52%), Positives = 312/469 (66%)
Query: 8 LTQLKSAVAGLNQ--ISENEKNGFINLVARYLSGEAQH--VEWSKIQTPTDKIVVPCDSL 63
LT L V Q + E E + F L R+++ +A+ V+W +I P VV D L
Sbjct: 60 LTALAETVTDEKQKNLFETEMDNFFALFRRFVNDKAKGSTVDWDRIAPPAQGQVVDYDEL 119
Query: 64 APVPEDPAEXXXXXXXXXXXXXXXXXXXXMGCTGPKSVIEVRNGLTFLDLIVIQIENLNA 123
A +E MGC GPKSVIEVR+G++FLDL V Q+E+LN
Sbjct: 120 AN-----SESVEFLSKLAVLKLNGGLGTSMGCVGPKSVIEVRDGMSFLDLSVRQVEHLNR 174
Query: 124 KYGCNVPLLLMNSFNTHDDTSKIIEKYSKSNVEIHTFNQSQYPRLCADDFVPLPCKGKTD 183
YG NVP +LMNSFNT +DT+ II+KY NV+I TFNQS+YPR+ D +P+P ++
Sbjct: 175 TYGTNVPFILMNSFNTDEDTASIIKKYEGHNVDIMTFNQSRYPRILKDSLLPVPKSYDSN 234
Query: 184 KDGWYPPGHGDVFPSLMNSGKLDALISQGKEYVFAANSDNLGAIVDLKILNHLIQNKNEY 243
D WYPPGHGDVF SL NSG LD LI +G EY+F +N DNLGA+VDL+IL H+++ EY
Sbjct: 235 IDAWYPPGHGDVFESLYNSGVLDKLIERGIEYIFLSNVDNLGAVVDLRILQHMVETGAEY 294
Query: 244 CMEVTPKTLADVKGGTLISYEGKVQLLEIAQVPDEHVNEFKSIEKFKIFNTNNLWVNLKA 303
ME+T KT ADVKGGT+I YEGKV+LLEIAQVP EHVNEFKSI+KF+ FNTNN+W+N++A
Sbjct: 295 IMELTNKTKADVKGGTIIDYEGKVRLLEIAQVPKEHVNEFKSIKKFRYFNTNNIWMNVQA 354
Query: 304 IKRLVEADALKMEIIPNPKEVDG-------IKVLQLETAAGAAIRFFDHAIGCNVHRSRF 356
IKR+VE L+MEIIPN K + G I ++QLETA GAAIR F++A G NV R RF
Sbjct: 355 IKRVVENHELEMEIIPNGKTIPGDKKGESDISIIQLETAVGAAIRHFNNAHGVNVPRRRF 414
Query: 357 LPVKATSDLLLVQSDLYTLADGFVTRNEARKNPANPTIELGPEFKKVGNFLSRFKSIPSI 416
LPVK SDL+LV+SDLYT+ G + + AR A P I+LG +FKKV +F R SIP +
Sbjct: 415 LPVKTCSDLMLVKSDLYTVKHGQLQMSAARFGDA-PLIKLGTDFKKVSDFQKRISSIPKM 473
Query: 417 IELDSLKVTGDVWFGANITLKGKVTIAAKSGEKLEIPDGAVLENKEING 465
IELD L +TG V G +T KG V I A G+ ++IP G++LEN + G
Sbjct: 474 IELDHLTITGAVNLGRGVTFKGTVIIVATEGQTIDIPPGSILENVVVQG 522
|
|
| UNIPROTKB|F1NNR1 UGP2 "Uncharacterized protein" [Gallus gallus (taxid:9031)] | Back alignment and assigned GO terms |
|---|
Score = 1170 (416.9 bits), Expect = 7.7e-119, P = 7.7e-119
Identities = 244/465 (52%), Positives = 320/465 (68%)
Query: 14 AVAGLNQISENEKN--GFINLVARYLSGEAQHVEWSKIQTPTDKIVVPCDSLAP--VPED 69
A A N++ +K+ GF L R+L + V+W KIQ P + + P + + +P++
Sbjct: 41 ATAPSNELEHTKKDLEGFKKLFHRFLQEKGPSVDWGKIQRPPEDSIQPYEKIKARGLPDN 100
Query: 70 PAEXXXXXXXXXXXXXXXXXXXXMGCTGPKSVIEVRNGLTFLDLIVIQIENLNAKYGCNV 129
A MGC GPKS+I VRN TFLDL V QIE+LN Y +V
Sbjct: 101 IASVLNKLVVVKLNGGLGTS---MGCKGPKSLIGVRNENTFLDLTVQQIEHLNKTYNTDV 157
Query: 130 PLLLMNSFNTHDDTSKIIEKYSKSNVEIHTFNQSQYPRLCADDFVPLP----CKGKTDKD 185
PL+LMNSFNT +DT KI++KYS S V+I+TFNQS+YPR+ + +P+ G+ + +
Sbjct: 158 PLVLMNSFNTDEDTKKILQKYSLSRVKIYTFNQSRYPRINKETLLPIAKDVSYSGE-NTE 216
Query: 186 GWYPPGHGDVFPSLMNSGKLDALISQGKEYVFAANSDNLGAIVDLKILNHLIQNKN---- 241
WYPPGHGD++ S NSG LD LI++GKEY+F +N DNLGA VDL ILNHL+ N
Sbjct: 217 CWYPPGHGDIYGSFYNSGLLDNLIAEGKEYIFVSNIDNLGATVDLYILNHLMNPPNGKRC 276
Query: 242 EYCMEVTPKTLADVKGGTLISYEGKVQLLEIAQVPDEHVNEFKSIEKFKIFNTNNLWVNL 301
E+ MEVT KT ADVKGGTL YE K++L+EIAQVP HV+EFKS+ KFKIFNTNNLW+ L
Sbjct: 277 EFVMEVTNKTRADVKGGTLTQYENKLRLVEIAQVPKAHVDEFKSVSKFKIFNTNNLWIAL 336
Query: 302 KAIKRLVEADALKMEIIPNPKEVDG-IKVLQLETAAGAAIRFFDHAIGCNVHRSRFLPVK 360
AIKRL E +A+ MEII NPK +DG + V+QLETA GAAI+ F++++G NV RSRFLPVK
Sbjct: 337 SAIKRLQEKNAIDMEIIVNPKTLDGGLNVIQLETAVGAAIKSFENSLGINVPRSRFLPVK 396
Query: 361 ATSDLLLVQSDLYTLADGFVTRNEARKNPANPTIELGPEFKKVGNFLSRFKSIPSIIELD 420
TSDLLLV S+LY+L G +T +E R+ P P ++LG F KV ++L RF+SIP ++ELD
Sbjct: 397 TTSDLLLVMSNLYSLNAGSLTMSEKREFPTVPLVKLGSSFTKVQDYLRRFESIPDMLELD 456
Query: 421 SLKVTGDVWFGANITLKGKVTIAAKSGEKLEIPDGAVLENKEING 465
L V+GDV FG N++LKG V I A G++++IP GAVLENK ++G
Sbjct: 457 HLTVSGDVTFGKNVSLKGTVIIIANHGDRIDIPAGAVLENKIVSG 501
|
|
| UNIPROTKB|E2R5R9 UGP2 "Uncharacterized protein" [Canis lupus familiaris (taxid:9615)] | Back alignment and assigned GO terms |
|---|
Score = 1169 (416.6 bits), Expect = 9.8e-119, P = 9.8e-119
Identities = 237/453 (52%), Positives = 312/453 (68%)
Query: 22 SENEKNGFINLVARYLSGEAQHVEWSKIQTPTDKIVVPCDSLAPVPEDPAEXXXXXXXXX 81
++ + +GF L R+L + V+W KIQ P + + P + + P
Sbjct: 51 TKKDLDGFRKLFHRFLQEKGPSVDWGKIQRPPEDSIQPYEKIK-ARGLPDNISSVLNKLV 109
Query: 82 XXXXXXXXXXXMGCTGPKSVIEVRNGLTFLDLIVIQIENLNAKYGCNVPLLLMNSFNTHD 141
MGC GPKS+I VRN TFLDL V QIE+LN Y +VPL+LMNSFNT +
Sbjct: 110 VVKLNGGLGTSMGCKGPKSLIGVRNENTFLDLTVQQIEHLNKTYNTDVPLVLMNSFNTDE 169
Query: 142 DTSKIIEKYSKSNVEIHTFNQSQYPRLCADDFVPLP----CKGKTDKDGWYPPGHGDVFP 197
DT KI++KY+ V+I+TFNQS+YPR+ + +P+ G+ + + WYPPGHGD++
Sbjct: 170 DTKKILQKYNHCRVKIYTFNQSRYPRINKESLLPVAKDVSYSGE-NTEAWYPPGHGDIYA 228
Query: 198 SLMNSGKLDALISQGKEYVFAANSDNLGAIVDLKILNHLIQNKN----EYCMEVTPKTLA 253
S NSG LD LI +GKEY+F +N DNLGA VDL ILNHL+ N E+ MEVT KT A
Sbjct: 229 SFYNSGLLDTLIGEGKEYIFVSNIDNLGATVDLYILNHLMNPPNGKPCEFVMEVTNKTRA 288
Query: 254 DVKGGTLISYEGKVQLLEIAQVPDEHVNEFKSIEKFKIFNTNNLWVNLKAIKRLVEADAL 313
DVKGGTL YEGK++L+EIAQVP HV+EFKS+ KFKIFNTNNLW++L A+KRL E +A+
Sbjct: 289 DVKGGTLTQYEGKLRLVEIAQVPKAHVDEFKSVSKFKIFNTNNLWISLAAVKRLQEQNAI 348
Query: 314 KMEIIPNPKEVDG-IKVLQLETAAGAAIRFFDHAIGCNVHRSRFLPVKATSDLLLVQSDL 372
MEII NPK +DG + V+QLETA GAAI+ F++++G NV RSRFLPVK TSDLLLV S+L
Sbjct: 349 DMEIIVNPKTLDGGLNVIQLETAVGAAIKSFENSLGINVPRSRFLPVKTTSDLLLVMSNL 408
Query: 373 YTLADGFVTRNEARKNPANPTIELGPEFKKVGNFLSRFKSIPSIIELDSLKVTGDVWFGA 432
Y+L G +T +E R+ P P ++LG F KV ++L RF+SIP ++ELD L V+GDV FG
Sbjct: 409 YSLNAGSLTMSEKREFPTVPLVKLGSSFTKVQDYLRRFESIPDMLELDHLTVSGDVTFGK 468
Query: 433 NITLKGKVTIAAKSGEKLEIPDGAVLENKEING 465
N++LKG V I A G++++IP GAVLENK ++G
Sbjct: 469 NVSLKGTVIIIANHGDRIDIPPGAVLENKIVSG 501
|
|
| UNIPROTKB|F1Q1Q8 UGP2 "Uncharacterized protein" [Canis lupus familiaris (taxid:9615)] | Back alignment and assigned GO terms |
|---|
Score = 1169 (416.6 bits), Expect = 9.8e-119, P = 9.8e-119
Identities = 237/453 (52%), Positives = 312/453 (68%)
Query: 22 SENEKNGFINLVARYLSGEAQHVEWSKIQTPTDKIVVPCDSLAPVPEDPAEXXXXXXXXX 81
++ + +GF L R+L + V+W KIQ P + + P + + P
Sbjct: 40 TKKDLDGFRKLFHRFLQEKGPSVDWGKIQRPPEDSIQPYEKIK-ARGLPDNISSVLNKLV 98
Query: 82 XXXXXXXXXXXMGCTGPKSVIEVRNGLTFLDLIVIQIENLNAKYGCNVPLLLMNSFNTHD 141
MGC GPKS+I VRN TFLDL V QIE+LN Y +VPL+LMNSFNT +
Sbjct: 99 VVKLNGGLGTSMGCKGPKSLIGVRNENTFLDLTVQQIEHLNKTYNTDVPLVLMNSFNTDE 158
Query: 142 DTSKIIEKYSKSNVEIHTFNQSQYPRLCADDFVPLP----CKGKTDKDGWYPPGHGDVFP 197
DT KI++KY+ V+I+TFNQS+YPR+ + +P+ G+ + + WYPPGHGD++
Sbjct: 159 DTKKILQKYNHCRVKIYTFNQSRYPRINKESLLPVAKDVSYSGE-NTEAWYPPGHGDIYA 217
Query: 198 SLMNSGKLDALISQGKEYVFAANSDNLGAIVDLKILNHLIQNKN----EYCMEVTPKTLA 253
S NSG LD LI +GKEY+F +N DNLGA VDL ILNHL+ N E+ MEVT KT A
Sbjct: 218 SFYNSGLLDTLIGEGKEYIFVSNIDNLGATVDLYILNHLMNPPNGKPCEFVMEVTNKTRA 277
Query: 254 DVKGGTLISYEGKVQLLEIAQVPDEHVNEFKSIEKFKIFNTNNLWVNLKAIKRLVEADAL 313
DVKGGTL YEGK++L+EIAQVP HV+EFKS+ KFKIFNTNNLW++L A+KRL E +A+
Sbjct: 278 DVKGGTLTQYEGKLRLVEIAQVPKAHVDEFKSVSKFKIFNTNNLWISLAAVKRLQEQNAI 337
Query: 314 KMEIIPNPKEVDG-IKVLQLETAAGAAIRFFDHAIGCNVHRSRFLPVKATSDLLLVQSDL 372
MEII NPK +DG + V+QLETA GAAI+ F++++G NV RSRFLPVK TSDLLLV S+L
Sbjct: 338 DMEIIVNPKTLDGGLNVIQLETAVGAAIKSFENSLGINVPRSRFLPVKTTSDLLLVMSNL 397
Query: 373 YTLADGFVTRNEARKNPANPTIELGPEFKKVGNFLSRFKSIPSIIELDSLKVTGDVWFGA 432
Y+L G +T +E R+ P P ++LG F KV ++L RF+SIP ++ELD L V+GDV FG
Sbjct: 398 YSLNAGSLTMSEKREFPTVPLVKLGSSFTKVQDYLRRFESIPDMLELDHLTVSGDVTFGK 457
Query: 433 NITLKGKVTIAAKSGEKLEIPDGAVLENKEING 465
N++LKG V I A G++++IP GAVLENK ++G
Sbjct: 458 NVSLKGTVIIIANHGDRIDIPPGAVLENKIVSG 490
|
|
| UNIPROTKB|F1LQ84 Ugp2 "Protein Ugp2" [Rattus norvegicus (taxid:10116)] | Back alignment and assigned GO terms |
|---|
Score = 1169 (416.6 bits), Expect = 9.8e-119, P = 9.8e-119
Identities = 242/473 (51%), Positives = 323/473 (68%)
Query: 4 DAEKLTQLKSAVAGLNQISENEKNGFINLVARYLSGEAQHVEWSKIQTPTDKIVVPCDSL 63
+ EK+ L +A + + ++ + +GF L R+L + V+W KIQ P + V P + +
Sbjct: 34 ELEKI--LTTATSHEFEHTKKDLDGFRKLFHRFLQEKGPSVDWGKIQRPPEDSVSPNEKV 91
Query: 64 AP--VPEDPAEXXXXXXXXXXXXXXXXXXXXMGCTGPKSVIEVRNGLTFLDLIVIQIENL 121
+P+D MGC GPKS+I VRN TFLDL V QIE+L
Sbjct: 92 IRRGLPDD---ISSVLNKLVVVKLNGGLGTSMGCKGPKSLIGVRNENTFLDLTVQQIEHL 148
Query: 122 NAKYGCNVPLLLMNSFNTHDDTSKIIEKYSKSNVEIHTFNQSQYPRLCADDFVPLP---- 177
N Y +VPL+LMNSFNT +DT KI++KY+ V+I+TFNQS+YPR+ + +P+
Sbjct: 149 NKTYNTDVPLVLMNSFNTDEDTKKILQKYNHCRVKIYTFNQSRYPRINKESLLPIAKDVS 208
Query: 178 CKGKTDKDGWYPPGHGDVFPSLMNSGKLDALISQGKEYVFAANSDNLGAIVDLKILNHLI 237
G+ + + WYPPGHGD++ S NSG LD I +GKEY+F +N DNLGA VDL ILNHL+
Sbjct: 209 YSGE-NTEAWYPPGHGDIYASFYNSGLLDTFIEEGKEYIFVSNIDNLGATVDLYILNHLM 267
Query: 238 QNKN----EYCMEVTPKTLADVKGGTLISYEGKVQLLEIAQVPDEHVNEFKSIEKFKIFN 293
N E+ MEVT KT ADVKGGTL YEGK++L+EIAQVP HV+EFKS+ KFKIFN
Sbjct: 268 NPPNGKRCEFVMEVTNKTRADVKGGTLTQYEGKLRLVEIAQVPKAHVDEFKSVSKFKIFN 327
Query: 294 TNNLWVNLKAIKRLVEADALKMEIIPNPKEVDG-IKVLQLETAAGAAIRFFDHAIGCNVH 352
TNNLW++L A+KRL E +A+ MEII NPK +DG + V+QLETA GAAI+ F++++G NV
Sbjct: 328 TNNLWISLAAVKRLQEQNAIDMEIIVNPKTLDGGLNVIQLETAVGAAIKSFENSLGINVP 387
Query: 353 RSRFLPVKATSDLLLVQSDLYTLADGFVTRNEARKNPANPTIELGPEFKKVGNFLSRFKS 412
RSRFLPVK TSDLLLV S+LY+L G +T +E R+ P P ++LG F KV ++L RF+S
Sbjct: 388 RSRFLPVKTTSDLLLVMSNLYSLNAGSLTMSEKREFPTVPLVKLGSSFTKVQDYLRRFES 447
Query: 413 IPSIIELDSLKVTGDVWFGANITLKGKVTIAAKSGEKLEIPDGAVLENKEING 465
IP ++ELD L V+GDV FG N++LKG V I A G++++IP GAVLENK ++G
Sbjct: 448 IPDMLELDHLTVSGDVTFGKNVSLKGTVIIIANHGDRIDIPPGAVLENKIVSG 500
|
|
Prediction of Enzyme Commission (EC) Number
EC Number Prediction by Annotation Transfer from SWISS-PROT Entries 
Original result of BLAST against SWISS-PROT
ID ![]() | Name ![]() | Annotated EC number ![]() | Identity ![]() | Query coverage ![]() | Hit coverage ![]() | RBH(Q2H) ![]() | RBH(H2Q) ![]() |
| Q07130 | UGPA_BOVIN | 2, ., 7, ., 7, ., 9 | 0.5553 | 0.9232 | 0.8523 | yes | no |
| P79303 | UGPA_PIG | 2, ., 7, ., 7, ., 9 | 0.5486 | 0.9232 | 0.8523 | yes | no |
| Q16851 | UGPA_HUMAN | 2, ., 7, ., 7, ., 9 | 0.5530 | 0.9232 | 0.8523 | yes | no |
| P78811 | UGPA1_SCHPO | 2, ., 7, ., 7, ., 9 | 0.5478 | 0.9381 | 0.8695 | yes | no |
| Q91ZJ5 | UGPA_MOUSE | 2, ., 7, ., 7, ., 9 | 0.5405 | 0.9573 | 0.8838 | yes | no |
| Q9LKG7 | UGPA_ASTPN | 2, ., 7, ., 7, ., 9 | 0.8504 | 0.9978 | 0.9936 | N/A | no |
| Q54YZ0 | UGPA2_DICDI | 2, ., 7, ., 7, ., 9 | 0.5454 | 0.9573 | 0.8944 | yes | no |
| Q9M9P3 | UGPA2_ARATH | 2, ., 7, ., 7, ., 9 | 0.8486 | 1.0 | 1.0 | no | no |
| P19595 | UGPA_SOLTU | 2, ., 7, ., 7, ., 9 | 0.8693 | 0.9936 | 0.9769 | N/A | no |
| P57751 | UGPA1_ARATH | 2, ., 7, ., 7, ., 9 | 0.8632 | 0.9978 | 0.9957 | yes | no |
| O64459 | UGPA_PYRPY | 2, ., 7, ., 7, ., 9 | 0.8720 | 0.9808 | 0.9766 | N/A | no |
| Q8SSC5 | UGPA1_ENCCU | 2, ., 7, ., 7, ., 9 | 0.4783 | 0.9530 | 0.9085 | yes | no |
| Q43772 | UGPA_HORVU | 2, ., 7, ., 7, ., 9 | 0.8293 | 0.9872 | 0.9788 | N/A | no |
| Q9SDX3 | UGPA_MUSAC | 2, ., 7, ., 7, ., 9 | 0.8531 | 0.9872 | 0.9914 | N/A | no |
| P32861 | UGPA1_YEAST | 2, ., 7, ., 7, ., 9 | 0.5679 | 0.9339 | 0.8777 | yes | no |
| O35156 | UGPA_CRIGR | 2, ., 7, ., 7, ., 9 | 0.5384 | 0.9573 | 0.8838 | yes | no |
EC Number Prediction by Ezypred Server 
Original result from Ezypred Server
Fail to connect to Ezypred Server
Prediction of Functionally Associated Proteins
Functionally Associated Proteins Detected by STRING 
Original result from the STRING server
| Your Input: | |||||||||||
| eugene3.00440223 | UTP--glucose-1-phosphate uridylyltransferase (EC-2.7.7.9) (469 aa) | ||||||||||
(Populus trichocarpa) | |||||||||||
Predicted Functional Partners: | |||||||||||
| estExt_fgenesh4_pg.C_LG_XV1054 | phosphoglucomutase (EC-5.4.2.2) (551 aa) | • | • | • | 0.922 | ||||||
| estExt_fgenesh4_pm.C_LG_VIII0571 | phosphoglucomutase (EC-5.4.2.2) (582 aa) | • | • | • | 0.920 | ||||||
| estExt_fgenesh4_pg.C_LG_X0989 | phosphoglucomutase (EC-5.4.2.2) (582 aa) | • | • | • | 0.920 | ||||||
| eugene3.00121193 | phosphoglucomutase (EC-5.4.2.2) (631 aa) | • | • | • | 0.918 | ||||||
| estExt_Genewise1_v1.C_LG_IV2986 | hypothetical protein; Phosphorylase is an important allosteric enzyme in carbohydrate metabolis [...] (819 aa) | • | • | • | 0.911 | ||||||
| estExt_fgenesh4_pg.C_LG_IX1158 | hypothetical protein; Phosphorylase is an important allosteric enzyme in carbohydrate metabolis [...] (853 aa) | • | • | • | 0.909 | ||||||
| gw1.IV.2527.1 | trehalose-6-phosphate synthase (769 aa) | • | • | 0.907 | |||||||
| estExt_Genewise1_v1.C_LG_IV0101 | hypothetical protein; Phosphorylase is an important allosteric enzyme in carbohydrate metabolis [...] (950 aa) | • | • | 0.902 | |||||||
| fgenesh4_pg.C_LG_III000738 | hypothetical protein (861 aa) | • | • | 0.902 | |||||||
| eugene3.00110684 | hypothetical protein (853 aa) | • | • | 0.901 | |||||||
Conserved Domains and Related Protein Families
Conserved Domains Detected by RPS-BLAST 
Original result of RPS-BLAST against CDD database part I
ID ![]() | Alignment Graph ![]() | Length ![]() |
Definition ![]() |
E-value ![]() |
| Query | 469 | |||
| PLN02474 | 469 | PLN02474, PLN02474, UTP--glucose-1-phosphate uridy | 0.0 | |
| pfam01704 | 417 | pfam01704, UDPGP, UTP--glucose-1-phosphate uridyly | 0.0 | |
| cd00897 | 300 | cd00897, UGPase_euk, Eukaryotic UGPase catalyses t | 0.0 | |
| COG4284 | 472 | COG4284, COG4284, UDP-glucose pyrophosphorylase [C | 1e-111 | |
| cd04180 | 266 | cd04180, UGPase_euk_like, Eukaryotic UGPase-like i | 6e-94 | |
| cd04193 | 323 | cd04193, UDPGlcNAc_PPase, UDPGlcNAc pyrophosphoryl | 2e-18 | |
| cd06424 | 315 | cd06424, UGGPase, UGGPase catalyzes the synthesis | 7e-09 | |
| PTZ00339 | 482 | PTZ00339, PTZ00339, UDP-N-acetylglucosamine pyroph | 4e-07 | |
| PLN02830 | 615 | PLN02830, PLN02830, UDP-sugar pyrophosphorylase | 3e-04 | |
| PLN02435 | 493 | PLN02435, PLN02435, probable UDP-N-acetylglucosami | 4e-04 |
| >gnl|CDD|178092 PLN02474, PLN02474, UTP--glucose-1-phosphate uridylyltransferase | Back alignment and domain information |
|---|
Score = 938 bits (2425), Expect = 0.0
Identities = 422/469 (89%), Positives = 444/469 (94%)
Query: 1 MATDAEKLTQLKSAVAGLNQISENEKNGFINLVARYLSGEAQHVEWSKIQTPTDKIVVPC 60
AT EKL QL+SAVAGL+QISENEK+GFI+LV+RYLSGEAQH+EWSKIQTPTD++VVP
Sbjct: 1 AATADEKLPQLRSAVAGLDQISENEKSGFISLVSRYLSGEAQHIEWSKIQTPTDEVVVPY 60
Query: 61 DSLAPVPEDPAETKKLLDKLVVLKLNGGLGTTMGCTGPKSVIEVRNGLTFLDLIVIQIEN 120
D LAPVPEDP ETKKLLDKLVVLKLNGGLGTTMGCTGPKSVIEVRNGLTFLDLIVIQIEN
Sbjct: 61 DKLAPVPEDPEETKKLLDKLVVLKLNGGLGTTMGCTGPKSVIEVRNGLTFLDLIVIQIEN 120
Query: 121 LNAKYGCNVPLLLMNSFNTHDDTSKIIEKYSKSNVEIHTFNQSQYPRLCADDFVPLPCKG 180
LN KYGCNVPLLLMNSFNTHDDT KI+EKY+ SN+EIHTFNQSQYPR+ ADDFVP P KG
Sbjct: 121 LNKKYGCNVPLLLMNSFNTHDDTQKIVEKYTNSNIEIHTFNQSQYPRVVADDFVPWPSKG 180
Query: 181 KTDKDGWYPPGHGDVFPSLMNSGKLDALISQGKEYVFAANSDNLGAIVDLKILNHLIQNK 240
KTDKDGWYPPGHGDVFPSLMNSGKLDAL+SQGKEYVF ANSDNLGAIVDLKILNHLIQNK
Sbjct: 181 KTDKDGWYPPGHGDVFPSLMNSGKLDALLSQGKEYVFIANSDNLGAIVDLKILNHLIQNK 240
Query: 241 NEYCMEVTPKTLADVKGGTLISYEGKVQLLEIAQVPDEHVNEFKSIEKFKIFNTNNLWVN 300
NEYCMEVTPKTLADVKGGTLISYEGKVQLLEIAQVPDEHVNEFKSIEKFKIFNTNNLWVN
Sbjct: 241 NEYCMEVTPKTLADVKGGTLISYEGKVQLLEIAQVPDEHVNEFKSIEKFKIFNTNNLWVN 300
Query: 301 LKAIKRLVEADALKMEIIPNPKEVDGIKVLQLETAAGAAIRFFDHAIGCNVHRSRFLPVK 360
LKAIKRLVEADALKMEIIPNPKEVDG+KVLQLETAAGAAIRFFD+AIG NV RSRFLPVK
Sbjct: 301 LKAIKRLVEADALKMEIIPNPKEVDGVKVLQLETAAGAAIRFFDNAIGINVPRSRFLPVK 360
Query: 361 ATSDLLLVQSDLYTLADGFVTRNEARKNPANPTIELGPEFKKVGNFLSRFKSIPSIIELD 420
ATSDLLLVQSDLYTL DGFV RN+AR NP+NP+IELGPEFKKV NFLSRFKSIPSI+ELD
Sbjct: 361 ATSDLLLVQSDLYTLVDGFVIRNKARTNPSNPSIELGPEFKKVANFLSRFKSIPSIVELD 420
Query: 421 SLKVTGDVWFGANITLKGKVTIAAKSGEKLEIPDGAVLENKEINGPGDL 469
SLKV+GDVWFG+ I LKGKVTI AKSG KLEIPDGAVLENK+INGP DL
Sbjct: 421 SLKVSGDVWFGSGIVLKGKVTITAKSGVKLEIPDGAVLENKDINGPEDL 469
|
Length = 469 |
| >gnl|CDD|201928 pfam01704, UDPGP, UTP--glucose-1-phosphate uridylyltransferase | Back alignment and domain information |
|---|
Score = 619 bits (1597), Expect = 0.0
Identities = 263/418 (62%), Positives = 312/418 (74%), Gaps = 6/418 (1%)
Query: 25 EKNGFINLVARYLSGEAQHVEWSKIQTPTDKIVVPCDSLAPVPEDPAETKKLLDKLVVLK 84
E +GF L RYL+ + ++W KI+ P VV D L PED LL+KL VLK
Sbjct: 1 ELDGFFKLYHRYLNEKGHQIDWDKIREPNPDEVVDYDQLKA-PEDEDNAGSLLNKLAVLK 59
Query: 85 LNGGLGTTMGCTGPKSVIEVRNGLTFLDLIVIQIENLNAKYGCNVPLLLMNSFNTHDDTS 144
LNGGLGT+MGC GPKS+IEVRNG TFLDLIV QIE LN +Y C+VPLLLMNSFNT ++T
Sbjct: 60 LNGGLGTSMGCKGPKSMIEVRNGNTFLDLIVQQIEQLNKRYNCDVPLLLMNSFNTDEETK 119
Query: 145 KIIEKYSKSNVEIHTFNQSQYPRLCADDFVPLPCKGKTD-KDGWYPPGHGDVFPSLMNSG 203
K +EKYS S VEI TF QS+YPR+ D +P+P K + D WYPPGHGD+F SL NSG
Sbjct: 120 KFLEKYSGSKVEIKTFQQSRYPRIYKDSLLPVPKKKDSMAPDEWYPPGHGDLFRSLYNSG 179
Query: 204 KLDALISQGKEYVFAANSDNLGAIVDLKILNHLIQNKNEYCMEVTPKTLADVKGGTLISY 263
LD L++QGKEY+F +N DNLGA VDL ILNH+I EY MEVT KT ADVKGGTLISY
Sbjct: 180 LLDTLLAQGKEYIFVSNVDNLGATVDLNILNHIINKGIEYGMEVTEKTNADVKGGTLISY 239
Query: 264 EGKVQLLEIAQVPDEHVNEFKSIEKFKIFNTNNLWVNLKAIKRLVEADALKMEIIPNPKE 323
+GK++LLE AQVP EHV+EFKS KFKIFNTNN+W+NLKA+KRLVE++ L ++II N K+
Sbjct: 240 DGKLRLLEYAQVPKEHVDEFKSASKFKIFNTNNIWINLKAVKRLVESNELNLDIIVNQKK 299
Query: 324 V----DGIKVLQLETAAGAAIRFFDHAIGCNVHRSRFLPVKATSDLLLVQSDLYTLADGF 379
+ +GIKVLQLETAAGAAIR F ++ G NV R RFLPVK TSDLLLVQS+LY L G
Sbjct: 300 ITYKNNGIKVLQLETAAGAAIRQFKNSFGINVPRDRFLPVKTTSDLLLVQSNLYNLDHGS 359
Query: 380 VTRNEARKNPANPTIELGPEFKKVGNFLSRFKSIPSIIELDSLKVTGDVWFGANITLK 437
+ N R P P I+LG EFKKV FL+RF SIPSI+ELD L V+GDV+FG N+TLK
Sbjct: 360 LKLNPLRFGPTVPVIKLGSEFKKVAEFLARFPSIPSILELDHLTVSGDVYFGRNVTLK 417
|
This family consists of UTP--glucose-1-phosphate uridylyltransferases, EC:2.7.7.9. Also known as UDP-glucose pyrophosphorylase (UDPGP) and Glucose-1-phosphate uridylyltransferase. UTP--glucose-1-phosphate uridylyltransferase catalyzes the interconversion of MgUTP + glucose-1-phosphate and UDP-glucose + MgPPi. UDP-glucose is an important intermediate in mammalian carbohydrate interconversion involved in various metabolic roles depending on tissue type. In Dictyostelium (slime mold) mutants in this enzyme abort the development cycle. Also within the family is UDP-N-acetylglucosamine or AGX1 and two hypothetical proteins from Borrelia burgdorferi the lyme disease spirochaete. Length = 417 |
| >gnl|CDD|132998 cd00897, UGPase_euk, Eukaryotic UGPase catalyses the synthesis of UDP-Glucose | Back alignment and domain information |
|---|
Score = 569 bits (1468), Expect = 0.0
Identities = 212/300 (70%), Positives = 254/300 (84%), Gaps = 1/300 (0%)
Query: 77 LDKLVVLKLNGGLGTTMGCTGPKSVIEVRNGLTFLDLIVIQIENLNAKYGCNVPLLLMNS 136
L+KLVVLKLNGGLGT+MGCTGPKS+IEVR+G TFLDL V QIE+LN YG +VPL+LMNS
Sbjct: 1 LNKLVVLKLNGGLGTSMGCTGPKSLIEVRDGKTFLDLTVQQIEHLNKTYGVDVPLVLMNS 60
Query: 137 FNTHDDTSKIIEKYSKSNVEIHTFNQSQYPRLCADDFVPLPCKGKTDKDGWYPPGHGDVF 196
FNT +DT KI++KY+ NV+IHTFNQS+YPR+ + +P+P + + WYPPGHGD+F
Sbjct: 61 FNTDEDTKKILKKYAGVNVDIHTFNQSRYPRISKETLLPVPSWADSPDEEWYPPGHGDIF 120
Query: 197 PSLMNSGKLDALISQGKEYVFAANSDNLGAIVDLKILNHLIQNKNEYCMEVTPKTLADVK 256
SL NSG LD L++QGKEY+F +N DNLGA VDL+ILNH++ NK EY MEVT KT ADVK
Sbjct: 121 ESLYNSGLLDTLLAQGKEYLFVSNIDNLGATVDLRILNHMVDNKAEYIMEVTDKTRADVK 180
Query: 257 GGTLISYEGKVQLLEIAQVPDEHVNEFKSIEKFKIFNTNNLWVNLKAIKRLVEADALKME 316
GGTLI YEGK++LLEIAQVP EHV+EFKSI+KFKIFNTNNLWVNLKA+KR+VE +AL +E
Sbjct: 181 GGTLIQYEGKLRLLEIAQVPKEHVDEFKSIKKFKIFNTNNLWVNLKAVKRVVEENALDLE 240
Query: 317 IIPNPKEVDG-IKVLQLETAAGAAIRFFDHAIGCNVHRSRFLPVKATSDLLLVQSDLYTL 375
II NPK VDG + V+QLETA GAAI+ FD+A+G NV RSRFLPVK TSDLLLV+SDLY+L
Sbjct: 241 IIVNPKTVDGGLNVIQLETAVGAAIKNFDNALGVNVPRSRFLPVKTTSDLLLVRSDLYSL 300
|
UGPase (UDP-Glucose Pyrophosphorylase) catalyzes the reversible production of UDP-Glucose and pyrophosphate (PPi) from Glucose-1-phosphate and UTP. UDP-glucose plays pivotal roles in galactose utilization, in glycogen synthesis, and in the synthesis of the carbohydrate moieties of glycolipids, glycoproteins, and proteoglycans. UGPase is found in both prokaryotes and eukaryotes. Interestingly, while the prokaryotic and eukaryotic forms of UGPase catalyze the same reaction, they share low sequence similarity. This family consists of mainly eukaryotic UTP-glucose-1-phosphate uridylyltransferases. Length = 300 |
| >gnl|CDD|226734 COG4284, COG4284, UDP-glucose pyrophosphorylase [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Score = 337 bits (865), Expect = e-111
Identities = 176/466 (37%), Positives = 242/466 (51%), Gaps = 32/466 (6%)
Query: 6 EKLTQLKSAVAGLNQISENEKNGFINLVARYLSGEAQ--HVEWSKIQTPTDKIVVPCDSL 63
+KL Q A + + F L +RYL ++ EW KI+ P VV +
Sbjct: 32 DKLKQSSEKQALKSFEKLLLLDIFFFLFSRYLLNTSKASTQEWDKIRPPNPDDVVDYEKK 91
Query: 64 APVPEDPAETKKLLDKLVVLKLNGGLGTTMGCTGPKSVIEVRNGLTFLDLIVIQIENLNA 123
E K L KL VLKL GG GT +GC GPK + EV++G + DL QI+ LN
Sbjct: 92 IL--EGWGLLKIKLGKLAVLKLAGGQGTRLGCDGPKGLFEVKDGKSLFDLQAEQIKYLNR 149
Query: 124 KYGCNVPLLLMNSFNTHD-DTSKIIEKYSKSN-VEIHTFNQSQYPRLCADDFVPLPCKGK 181
+Y +VPL +M S NT + D+ Y + +I F QS +PRL +D +P
Sbjct: 150 QYNVDVPLYIMTSLNTEETDSYFKSNDYFGLDKEDIFFFVQSLFPRLLSDSGLPFLES-D 208
Query: 182 TDKDGWYPPGHGDVFPSLMNSGKLDALISQGKEYVFAANSDNLGAIVDLKILNHLIQNKN 241
WYPPG+GD+F +L +SG L+ LI+QG EY+F +N DNLGA VDLK L + +
Sbjct: 209 DSNLAWYPPGNGDLFKALKSSGILEKLIAQGIEYLFVSNIDNLGATVDLKFLGFMAETNY 268
Query: 242 EYCMEVTPKTLADVKGGTLISYEGKVQLLEIAQVPDEHVNEFKSIEKFKIFNTNNLWVNL 301
EY ME T KT AD K G L++Y+GK++LLE ++VP+EH EF S K K FNTNN+W++L
Sbjct: 269 EYLMETTDKTKADEKVGILVTYDGKLRLLEYSEVPNEHREEFTSDGKLKYFNTNNIWLHL 328
Query: 302 KAIKRLVEADALKMEIIPNPKEVDG-IKVLQLETAAGAAIRFFDHAIGCNVHRSRFLPVK 360
++K L EA L + I K++ ++QL TA G I F+ + F+P
Sbjct: 329 FSVKFLKEAAYLNLPIHKAIKKIPQLDNIIQLTTAIGKNISKFE---------NEFIP-- 377
Query: 361 ATSDLLLVQSDLYTLADGFVTRNEARKNPANPTIELGPE-FKKVGNFLSRFKSIPSIIEL 419
DL L +SD + R +P L F V F IP I+EL
Sbjct: 378 --FDLFLYKSD-----ENGGLLLVPRFGEFSPLKNLEGSHFDNVETFTCGIPRIPLILEL 430
Query: 420 DSLKVTGDVWFGANITLKGKVTIAAKSGEKLEIPDGAVLENKEING 465
+ L ++G+V FG N+TLK A L IP+ + LEN I G
Sbjct: 431 EGLTISGNVLFGRNVTLK-----YASENTSLCIPNKSFLENVIITG 471
|
Length = 472 |
| >gnl|CDD|133023 cd04180, UGPase_euk_like, Eukaryotic UGPase-like includes UDPase and UDPGlcNAc pyrophosphorylase enzymes | Back alignment and domain information |
|---|
Score = 284 bits (729), Expect = 6e-94
Identities = 96/297 (32%), Positives = 128/297 (43%), Gaps = 46/297 (15%)
Query: 80 LVVLKLNGGLGTTMGCTGPKSVIEVR--NGLTFLDLIVIQIENLN--AKYGCNVPLLLMN 135
+ V+ L GGLGT +G GPKS +V +G FL LI +I L Y C +P LMN
Sbjct: 1 VAVVLLAGGLGTRLGKDGPKSSTDVGLPSGQCFLQLIGEKILTLQEIDLYSCKIPEQLMN 60
Query: 136 SFNTHDDTSKIIEKYSKSNVEIHTFNQSQYPRLCADDFVPLPCKGKTDKDGWYPPGHGDV 195
S TH+ T EK ++ N + TF Q + P DD K +P GHGDV
Sbjct: 61 SKYTHEKTQCYFEKINQKNSYVITFMQGKLPLKNDDDARD---PHNKTKCHLFPCGHGDV 117
Query: 196 FPSLMNSGKLDALISQGKEYVFAANSDNLGAIV-DLKILNHLIQNKNEYCMEVTPKTLAD 254
+L++SG L+ L+ +G Y+ DNL V D + IQN+ +V PKT +
Sbjct: 118 VLALIHSGHLNKLLEKGYRYIHFIGVDNLLVKVADPLFIGIAIQNRKAINQKVVPKTRNE 177
Query: 255 VKGGTLISYE-GKVQLLEIAQVPDEHVNE--------FKSIEKFKIFNTNNLWVNLKAIK 305
GG I+ G+VQLLE Q+ + F +FNTNNL L K
Sbjct: 178 ESGGYRIANINGRVQLLEYDQIKKLLKQKMVNNQIPKDIDDAPFFLFNTNNLINFLVEFK 237
Query: 306 RLVEADALKMEIIPNPKEVDGIKVLQLETAAGAAIRFFDHAIGCNVHRS-RFLPVKA 361
V+ I F D +G VHR+ F PVK
Sbjct: 238 DRVD----------------------------DIIEFTDDIVGVMVHRAEEFAPVKN 266
|
This family includes UDP-Glucose Pyrophosphorylase (UDPase) and UDPGlcNAc pyrophosphorylase enzymes. The two enzymes share significant sequence and structure similarity. UDP-Glucose Pyrophosphorylase catalyzes a reversible production of UDP-Glucose and pyrophosphate (PPi) from Glucose-1-phosphate and UTP. UDP-glucose plays pivotal roles in galactose utilization, in glycogen synthesis, and in the synthesis of the carbohydrate moieties of glycolipids , glycoproteins , and proteoglycans . UDP-N-acetylglucosamine (UDPGlcNAc) pyrophosphorylase (UAP) (also named GlcNAc1P uridyltransferase), catalyzes the reversible conversion of UTP and GlcNAc1P from PPi and UDPGlcNAc, which is a key precursor of N- and O-linked glycosylations and is essential for the synthesis of chitin (a major component of the fungal cell wall) and of the glycosylphosphatidylinositol (GPI) linker anchoring a variety of cell surface proteins to the plasma membrane. In bacteria, UDPGlcNAc represents an essential precursor for both peptidoglycan and lipopolysaccharide biosynthesis. Length = 266 |
| >gnl|CDD|133036 cd04193, UDPGlcNAc_PPase, UDPGlcNAc pyrophosphorylase catalayzes the synthesis of UDPGlcNAc | Back alignment and domain information |
|---|
Score = 85.7 bits (213), Expect = 2e-18
Identities = 56/214 (26%), Positives = 94/214 (43%), Gaps = 19/214 (8%)
Query: 79 KLVVLKLNGGLGTTMGCTGPKS--VIEVRNGLTFLDLIVIQIENLNAKYG------CNVP 130
K+ VL L GG GT +G GPK + + + + L +I L G +P
Sbjct: 15 KVAVLLLAGGQGTRLGFDGPKGMFPVGLPSKKSLFQLQAERILKLQELAGEASGKKVPIP 74
Query: 131 LLLMNSFNTHDDTSKIIEK-----YSKSNVEIHTFNQSQYPRLCADDFVPLPCKGKTDKD 185
+M S TH++T K ++ V H F Q P + D + L KGK
Sbjct: 75 WYIMTSEATHEETRKFFKENNYFGLDPEQV--HFFQQGMLPCVDFDGKILLEEKGKI--- 129
Query: 186 GWYPPGHGDVFPSLMNSGKLDALISQGKEYVFAANSDN-LGAIVDLKILNHLIQNKNEYC 244
P G+G ++ +L +G L+ + +G +Y+ + DN L + D + I +
Sbjct: 130 AMAPNGNGGLYKALQTAGILEDMKKRGIKYIHVYSVDNILVKVADPVFIGFCISKGADVG 189
Query: 245 MEVTPKTLADVKGGTLISYEGKVQLLEIAQVPDE 278
+V K K G ++ +GK Q++E +++ DE
Sbjct: 190 AKVVRKRYPTEKVGVVVLVDGKPQVVEYSEISDE 223
|
UDP-N-acetylglucosamine (UDPGlcNAc) pyrophosphorylase (UAP) (also named GlcNAc1P uridyltransferase), catalyzes the reversible conversion of UTP and GlcNAc1 to PPi and UDPGlcNAc. UDP-N-acetylglucosamine (UDPGlcNAc), the activated form of GlcNAc, is a key precursor of N- and O-linked glycosylations. It is essential for the synthesis of chitin (a major component of the fungal cell wall) and of the glycosylphosphatidylinositol (GPI) linker which anchors a variety of cell surface proteins to the plasma membrane. In bacteria, UDPGlcNAc represents an essential precursor for both peptidoglycan and lipopolysaccharide biosynthesis. Human UAP has two isoforms, resulting from alternative splicing of a single gene and differing by the presence or absence of 17 amino acids. UDPGlcNAc pyrophosphorylase shares significant sequence and structure conservation with UDPglucose pyrophosphorylase. Length = 323 |
| >gnl|CDD|133046 cd06424, UGGPase, UGGPase catalyzes the synthesis of UDP-Glucose/UDP-Galactose | Back alignment and domain information |
|---|
Score = 56.7 bits (137), Expect = 7e-09
Identities = 37/143 (25%), Positives = 58/143 (40%), Gaps = 15/143 (10%)
Query: 87 GGLGTTMGCTGPKSVIEVR--NGLTFLDLIVIQI----ENLNAKYGCNVPLLLMNSFNTH 140
GGLG +G +G K + V T+L + I E +P ++M S +TH
Sbjct: 8 GGLGERLGYSGIKIGLPVELTTNTTYLQYYLNYIRAFQEASKKGEKMEIPFVIMTSDDTH 67
Query: 141 DDTSKIIEK---YSKSNVEIHTFNQSQYPRLCADD---FVPLPCKGKTDKDGWYPPGHGD 194
T K++E+ + ++H Q + L +D + P GHGD
Sbjct: 68 SKTLKLLEENNYFGLEKDQVHILKQEKVFCLIDNDAHLALDPDNTYSILTK---PHGHGD 124
Query: 195 VFPSLMNSGKLDALISQGKEYVF 217
V L NSG L I G +++
Sbjct: 125 VHTLLYNSGLLKKWIEAGYKWLV 147
|
UGGPase: UDP-Galactose/Glucose Pyrophosphorylase catalyzes the reversible production of UDP-Glucose/UDP-Galactose and pyrophosphate (PPi) from Glucose-1-phosphate/Galactose-1-phosphate and UTP. Its dual substrate specificity distinguishes it from the single substrate enzyme UDP-glucose pyrophosphorylase. It may play a key role in the galactose metabolism in raffinose oligosaccharide (RFO) metabolizing plants. RFO raffinose is a major photoassimilate and is a galactosylderivative of sucrose (Suc) containing a galactose (Gal) moiety. Upon arriving at the sink tissue, the Gal moieties of the RFOs are initially removed by alpha-galactosidase and then are phosphorylated to Gal-1-P. Gal-1-P is converted to UDP-Gal. The UDP-Gal is further metabolized to UDP-Glc via an epimerase reaction. The UDP-Glc can be directly utilized in cell wall metabolism or in Suc synthesis. However, for the Suc synthesis UDP-Glc must be further metabolized to Glc-1-P. This can be carried out either by the UGPase in the reverse direction or by the dual substrate PPase itself operating in the reverse direction. According to the latter possibility, the three-step pathway of Gal-1-P to Glc-1-P could be carried out by a single PPase, functioning sequentially in reverse directions separated by the epimerase reaction. Length = 315 |
| >gnl|CDD|240368 PTZ00339, PTZ00339, UDP-N-acetylglucosamine pyrophosphorylase; Provisional | Back alignment and domain information |
|---|
Score = 51.7 bits (124), Expect = 4e-07
Identities = 43/163 (26%), Positives = 66/163 (40%), Gaps = 29/163 (17%)
Query: 82 VLKLNGGLGTTMGCTGPKSVIEVR--NGLTFLDLIVIQIENL--------NAKYGCNVPL 131
VL L GGLGT +G PK ++E T ++ L + +
Sbjct: 109 VLILAGGLGTRLGSDKPKGLLECTPVKKKTLFQFHCEKVRRLEEMAVAVSGGGDDPTIYI 168
Query: 132 LLMNSFNTHDDTSKIIEKYS-----KSNVEIHTFNQSQYPRLCAD----DFVPL-PCKGK 181
L++ S HD T + +E+ + K V F QS P C D F+
Sbjct: 169 LVLTSSFNHDQTRQFLEENNFFGLDKEQV--IFFKQSSLP--CYDENTGRFIMSSQGSLC 224
Query: 182 TDKDGWYPPGHGDVFPSLMNSGKLDALISQGKEYVFAANSDNL 224
T P G+GDVF +L +L ++ +G +YV + DN+
Sbjct: 225 TA-----PGGNGDVFKALAKCSELMDIVRKGIKYVQVISIDNI 262
|
Length = 482 |
| >gnl|CDD|215444 PLN02830, PLN02830, UDP-sugar pyrophosphorylase | Back alignment and domain information |
|---|
Score = 42.7 bits (101), Expect = 3e-04
Identities = 45/149 (30%), Positives = 67/149 (44%), Gaps = 26/149 (17%)
Query: 87 GGLGTTMGCTGPKSVI--EVRNGLTFLDLIVIQI-------ENLNAKYGCNVPLLLMNSF 137
GGLG +G +G K + E G +L L + I + AK G +PL++M S
Sbjct: 136 GGLGERLGYSGIKVALPTETATGTCYLQLYIESILALQERAKKRKAKKGRKIPLVIMTSD 195
Query: 138 NTHDDTSKIIEK---YSKSNVEIHTFNQSQYP-------RLCADDFVPLPCKGKTDKDGW 187
+TH T K++E+ + ++ Q + RL D P + K
Sbjct: 196 DTHARTLKLLERNDYFGMDPDQVTLLKQEKVACLMDNDARLALDPNDPYKIQTK------ 249
Query: 188 YPPGHGDVFPSLMNSGKLDALISQGKEYV 216
P GHGDV L +SG LD +S GK++V
Sbjct: 250 -PHGHGDVHALLYSSGLLDKWLSAGKKWV 277
|
Length = 615 |
| >gnl|CDD|215238 PLN02435, PLN02435, probable UDP-N-acetylglucosamine pyrophosphorylase | Back alignment and domain information |
|---|
Score = 42.6 bits (100), Expect = 4e-04
Identities = 48/177 (27%), Positives = 75/177 (42%), Gaps = 23/177 (12%)
Query: 79 KLVVLKLNGGLGTTMGCTGPKSVIEVRNGL-TFLDLIVIQIENL-----------NAKYG 126
KL V+ L+GG GT +G + PK + GL + L +Q E + + G
Sbjct: 116 KLAVVLLSGGQGTRLGSSDPKGCFNI--GLPSGKSLFQLQAERILCVQRLAAQASSEGPG 173
Query: 127 CNVPL--LLMNSFNTHDDTSKIIEKYSKSNVE---IHTFNQSQYPRLCADDFVPLPCKGK 181
V + +M S T + T K E + +E + F Q P + D + K
Sbjct: 174 RPVTIHWYIMTSPFTDEATRKFFESHKYFGLEADQVTFFQQGTLPCVSKDGKFIMETPFK 233
Query: 182 TDKDGWYPPGHGDVFPSLMNSGKLDALISQGKEYVFAANSDN-LGAIVDLKILNHLI 237
K P G+G V+ +L +S L+ + S+G +YV DN L + D L + I
Sbjct: 234 VAKA---PDGNGGVYAALKSSRLLEDMASRGIKYVDCYGVDNALVRVADPTFLGYFI 287
|
Length = 493 |
Conserved Domains Detected by HHsearch 
Original result of HHsearch against CDD database
ID ![]() | Alignment Graph ![]() | Length ![]() |
Definition ![]() |
Probability ![]() |
| Query | 469 | |||
| KOG2638 | 498 | consensus UDP-glucose pyrophosphorylase [Carbohydr | 100.0 | |
| PLN02474 | 469 | UTP--glucose-1-phosphate uridylyltransferase | 100.0 | |
| PF01704 | 420 | UDPGP: UTP--glucose-1-phosphate uridylyltransferas | 100.0 | |
| PLN02830 | 615 | UDP-sugar pyrophosphorylase | 100.0 | |
| cd00897 | 300 | UGPase_euk Eukaryotic UGPase catalyses the synthes | 100.0 | |
| PLN02435 | 493 | probable UDP-N-acetylglucosamine pyrophosphorylase | 100.0 | |
| COG4284 | 472 | UDP-glucose pyrophosphorylase [Carbohydrate transp | 100.0 | |
| PTZ00339 | 482 | UDP-N-acetylglucosamine pyrophosphorylase; Provisi | 100.0 | |
| cd04193 | 323 | UDPGlcNAc_PPase UDPGlcNAc pyrophosphorylase catala | 100.0 | |
| cd06424 | 315 | UGGPase UGGPase catalyzes the synthesis of UDP-Glu | 100.0 | |
| cd04180 | 266 | UGPase_euk_like Eukaryotic UGPase-like includes UD | 100.0 | |
| KOG2388 | 477 | consensus UDP-N-acetylglucosamine pyrophosphorylas | 100.0 | |
| COG1207 | 460 | GlmU N-acetylglucosamine-1-phosphate uridyltransfe | 100.0 | |
| PRK14356 | 456 | glmU bifunctional N-acetylglucosamine-1-phosphate | 99.9 | |
| PRK14359 | 430 | glmU bifunctional N-acetylglucosamine-1-phosphate | 99.88 | |
| PRK14358 | 481 | glmU bifunctional N-acetylglucosamine-1-phosphate | 99.86 | |
| PRK09451 | 456 | glmU bifunctional N-acetylglucosamine-1-phosphate | 99.85 | |
| PRK05293 | 380 | glgC glucose-1-phosphate adenylyltransferase; Prov | 99.84 | |
| PRK14352 | 482 | glmU bifunctional N-acetylglucosamine-1-phosphate | 99.84 | |
| PRK14355 | 459 | glmU bifunctional N-acetylglucosamine-1-phosphate | 99.83 | |
| PRK00844 | 407 | glgC glucose-1-phosphate adenylyltransferase; Prov | 99.82 | |
| PRK14353 | 446 | glmU bifunctional N-acetylglucosamine-1-phosphate | 99.82 | |
| TIGR01173 | 451 | glmU UDP-N-acetylglucosamine diphosphorylase/gluco | 99.81 | |
| COG1208 | 358 | GCD1 Nucleoside-diphosphate-sugar pyrophosphorylas | 99.8 | |
| TIGR01208 | 353 | rmlA_long glucose-1-phosphate thymidylylransferase | 99.8 | |
| PRK14360 | 450 | glmU bifunctional N-acetylglucosamine-1-phosphate | 99.79 | |
| PRK00725 | 425 | glgC glucose-1-phosphate adenylyltransferase; Prov | 99.79 | |
| TIGR02092 | 369 | glgD glucose-1-phosphate adenylyltransferase, GlgD | 99.79 | |
| PRK14357 | 448 | glmU bifunctional N-acetylglucosamine-1-phosphate | 99.79 | |
| PRK14354 | 458 | glmU bifunctional N-acetylglucosamine-1-phosphate | 99.76 | |
| PRK02862 | 429 | glgC glucose-1-phosphate adenylyltransferase; Prov | 99.75 | |
| TIGR02091 | 361 | glgC glucose-1-phosphate adenylyltransferase. This | 99.74 | |
| PLN02917 | 293 | CMP-KDO synthetase | 99.69 | |
| KOG1322 | 371 | consensus GDP-mannose pyrophosphorylase/mannose-1- | 99.68 | |
| PLN02241 | 436 | glucose-1-phosphate adenylyltransferase | 99.66 | |
| KOG1460 | 407 | consensus GDP-mannose pyrophosphorylase [Carbohydr | 99.65 | |
| PF00483 | 248 | NTP_transferase: Nucleotidyl transferase This Pros | 99.62 | |
| PRK15480 | 292 | glucose-1-phosphate thymidylyltransferase RfbA; Pr | 99.58 | |
| cd02540 | 229 | GT2_GlmU_N_bac N-terminal domain of bacterial GlmU | 99.57 | |
| TIGR01105 | 297 | galF UTP-glucose-1-phosphate uridylyltransferase, | 99.56 | |
| TIGR02623 | 254 | G1P_cyt_trans glucose-1-phosphate cytidylyltransfe | 99.5 | |
| cd04189 | 236 | G1P_TT_long G1P_TT_long represents the long form o | 99.49 | |
| TIGR01207 | 286 | rmlA glucose-1-phosphate thymidylyltransferase, sh | 99.48 | |
| PRK10122 | 297 | GalU regulator GalF; Provisional | 99.48 | |
| cd02538 | 240 | G1P_TT_short G1P_TT_short is the short form of glu | 99.47 | |
| cd06426 | 220 | NTP_transferase_like_2 NTP_trnasferase_like_2 is a | 99.47 | |
| cd06428 | 257 | M1P_guanylylT_A_like_N N-terminal domain of M1P_gu | 99.43 | |
| cd06425 | 233 | M1P_guanylylT_B_like_N N-terminal domain of the M1 | 99.41 | |
| PRK05450 | 245 | 3-deoxy-manno-octulosonate cytidylyltransferase; P | 99.38 | |
| cd06915 | 223 | NTP_transferase_WcbM_like WcbM_like is a subfamily | 99.38 | |
| cd04181 | 217 | NTP_transferase NTP_transferases catalyze the tran | 99.37 | |
| COG0448 | 393 | GlgC ADP-glucose pyrophosphorylase [Carbohydrate t | 99.34 | |
| cd02517 | 239 | CMP-KDO-Synthetase CMP-KDO synthetase catalyzes th | 99.34 | |
| PRK13389 | 302 | UTP--glucose-1-phosphate uridylyltransferase subun | 99.33 | |
| cd02509 | 274 | GDP-M1P_Guanylyltransferase GDP-M1P_Guanylyltransf | 99.32 | |
| cd02541 | 267 | UGPase_prokaryotic Prokaryotic UGPase catalyses th | 99.3 | |
| cd02524 | 253 | G1P_cytidylyltransferase G1P_cytidylyltransferase | 99.28 | |
| cd02523 | 229 | PC_cytidylyltransferase Phosphocholine cytidylyltr | 99.27 | |
| COG1209 | 286 | RfbA dTDP-glucose pyrophosphorylase [Cell envelope | 99.27 | |
| TIGR01099 | 260 | galU UTP-glucose-1-phosphate uridylyltransferase. | 99.27 | |
| cd04197 | 217 | eIF-2B_epsilon_N The N-terminal domain of epsilon | 99.26 | |
| cd06422 | 221 | NTP_transferase_like_1 NTP_transferase_like_1 is a | 99.22 | |
| cd04183 | 231 | GT2_BcE_like GT2_BcbE_like is likely involved in t | 99.21 | |
| cd02508 | 200 | ADP_Glucose_PP ADP-glucose pyrophosphorylase is in | 99.19 | |
| TIGR01479 | 468 | GMP_PMI mannose-1-phosphate guanylyltransferase/ma | 99.13 | |
| TIGR00453 | 217 | ispD 2-C-methyl-D-erythritol 4-phosphate cytidylyl | 99.02 | |
| PF14134 | 513 | DUF4301: Domain of unknown function (DUF4301) | 98.91 | |
| cd04198 | 214 | eIF-2B_gamma_N The N-terminal domain of gamma subu | 98.9 | |
| PRK13368 | 238 | 3-deoxy-manno-octulosonate cytidylyltransferase; P | 98.88 | |
| cd02513 | 223 | CMP-NeuAc_Synthase CMP-NeuAc_Synthase activates N- | 98.82 | |
| PRK00155 | 227 | ispD 2-C-methyl-D-erythritol 4-phosphate cytidylyl | 98.81 | |
| PF12804 | 160 | NTP_transf_3: MobA-like NTP transferase domain; PD | 98.78 | |
| cd02516 | 218 | CDP-ME_synthetase CDP-ME synthetase is involved in | 98.69 | |
| cd02507 | 216 | eIF-2B_gamma_N_like The N-terminal of eIF-2B_gamma | 98.68 | |
| TIGR00454 | 183 | conserved hypothetical protein TIGR00454. At this | 98.62 | |
| COG1213 | 239 | Predicted sugar nucleotidyltransferases [Cell enve | 98.61 | |
| TIGR00466 | 238 | kdsB 3-deoxy-D-manno-octulosonate cytidylyltransfe | 98.52 | |
| PRK13385 | 230 | 2-C-methyl-D-erythritol 4-phosphate cytidylyltrans | 98.47 | |
| cd04182 | 186 | GT_2_like_f GT_2_like_f is a subfamily of the glyc | 98.37 | |
| KOG1462 | 433 | consensus Translation initiation factor 2B, gamma | 98.36 | |
| COG2266 | 177 | GTP:adenosylcobinamide-phosphate guanylyltransfera | 98.36 | |
| TIGR03310 | 188 | matur_ygfJ molybdenum hydroxylase accessory protei | 98.31 | |
| cd02503 | 181 | MobA MobA catalyzes the formation of molybdopterin | 98.27 | |
| COG0836 | 333 | {ManC} Mannose-1-phosphate guanylyltransferase [Ce | 98.25 | |
| PRK15460 | 478 | cpsB mannose-1-phosphate guanyltransferase; Provis | 98.21 | |
| PLN02728 | 252 | 2-C-methyl-D-erythritol 4-phosphate cytidylyltrans | 98.18 | |
| PRK09382 | 378 | ispDF bifunctional 2-C-methyl-D-erythritol 4-phosp | 98.18 | |
| PRK02726 | 200 | molybdopterin-guanine dinucleotide biosynthesis pr | 98.17 | |
| PF01128 | 221 | IspD: 2-C-methyl-D-erythritol 4-phosphate cytidyly | 98.16 | |
| PRK00560 | 196 | molybdopterin-guanine dinucleotide biosynthesis pr | 98.14 | |
| TIGR03202 | 190 | pucB xanthine dehydrogenase accessory protein pucB | 98.11 | |
| TIGR02665 | 186 | molyb_mobA molybdopterin-guanine dinucleotide bios | 98.11 | |
| PRK14489 | 366 | putative bifunctional molybdopterin-guanine dinucl | 98.06 | |
| COG0746 | 192 | MobA Molybdopterin-guanine dinucleotide biosynthes | 98.04 | |
| COG1210 | 291 | GalU UDP-glucose pyrophosphorylase [Cell envelope | 97.87 | |
| PRK14490 | 369 | putative bifunctional molybdopterin-guanine dinucl | 97.83 | |
| TIGR03584 | 222 | PseF pseudaminic acid CMP-transferase. The sequenc | 97.81 | |
| COG4750 | 231 | LicC CTP:phosphocholine cytidylyltransferase invol | 97.68 | |
| cd02518 | 233 | GT2_SpsF SpsF is a glycosyltrnasferase implicated | 97.66 | |
| COG1211 | 230 | IspD 4-diphosphocytidyl-2-methyl-D-erithritol synt | 97.61 | |
| PRK00317 | 193 | mobA molybdopterin-guanine dinucleotide biosynthes | 97.61 | |
| COG2068 | 199 | Uncharacterized MobA-related protein [General func | 97.54 | |
| PRK14500 | 346 | putative bifunctional molybdopterin-guanine dinucl | 97.3 | |
| KOG1461 | 673 | consensus Translation initiation factor 2B, epsilo | 96.53 | |
| COG1207 | 460 | GlmU N-acetylglucosamine-1-phosphate uridyltransfe | 96.16 | |
| cd03353 | 193 | LbH_GlmU_C N-acetyl-glucosamine-1-phosphate uridyl | 95.95 | |
| COG1212 | 247 | KdsB CMP-2-keto-3-deoxyoctulosonic acid synthetase | 95.82 | |
| cd05636 | 163 | LbH_G1P_TT_C_like Putative glucose-1-phosphate thy | 95.12 | |
| cd05824 | 80 | LbH_M1P_guanylylT_C Mannose-1-phosphate guanylyltr | 94.75 | |
| cd04650 | 154 | LbH_FBP Ferripyochelin Binding Protein (FBP): FBP | 94.19 | |
| cd03356 | 79 | LbH_G1P_AT_C_like Left-handed parallel beta-Helix | 93.89 | |
| PLN02472 | 246 | uncharacterized protein | 93.84 | |
| cd05636 | 163 | LbH_G1P_TT_C_like Putative glucose-1-phosphate thy | 93.4 | |
| TIGR02287 | 192 | PaaY phenylacetic acid degradation protein PaaY. M | 93.31 | |
| cd03359 | 161 | LbH_Dynactin_5 Dynactin 5 (or subunit p25); Dynact | 93.2 | |
| cd04645 | 153 | LbH_gamma_CA_like Gamma carbonic anhydrase-like: T | 93.13 | |
| PRK13627 | 196 | carnitine operon protein CaiE; Provisional | 92.99 | |
| TIGR02287 | 192 | PaaY phenylacetic acid degradation protein PaaY. M | 92.91 | |
| cd04652 | 81 | LbH_eIF2B_gamma_C eIF-2B gamma subunit, C-terminal | 92.67 | |
| cd04745 | 155 | LbH_paaY_like paaY-like: This group is composed by | 92.65 | |
| PLN02296 | 269 | carbonate dehydratase | 92.36 | |
| TIGR01853 | 324 | lipid_A_lpxD UDP-3-O-[3-hydroxymyristoyl] glucosam | 92.31 | |
| cd03351 | 254 | LbH_UDP-GlcNAc_AT UDP-N-acetylglucosamine O-acyltr | 92.3 | |
| PRK14358 | 481 | glmU bifunctional N-acetylglucosamine-1-phosphate | 92.22 | |
| cd05787 | 79 | LbH_eIF2B_epsilon eIF-2B epsilon subunit, central | 92.18 | |
| cd04645 | 153 | LbH_gamma_CA_like Gamma carbonic anhydrase-like: T | 91.96 | |
| cd04745 | 155 | LbH_paaY_like paaY-like: This group is composed by | 91.89 | |
| PF02348 | 217 | CTP_transf_3: Cytidylyltransferase; InterPro: IPR0 | 91.8 | |
| PF00132 | 36 | Hexapep: Bacterial transferase hexapeptide (six re | 91.61 | |
| COG1044 | 338 | LpxD UDP-3-O-[3-hydroxymyristoyl] | 91.53 | |
| cd00208 | 78 | LbetaH Left-handed parallel beta-Helix (LbetaH or | 91.45 | |
| cd04652 | 81 | LbH_eIF2B_gamma_C eIF-2B gamma subunit, C-terminal | 91.4 | |
| cd04650 | 154 | LbH_FBP Ferripyochelin Binding Protein (FBP): FBP | 91.4 | |
| PRK14359 | 430 | glmU bifunctional N-acetylglucosamine-1-phosphate | 91.4 | |
| cd04646 | 164 | LbH_Dynactin_6 Dynactin 6 (or subunit p27): Dynact | 91.37 | |
| PRK05289 | 262 | UDP-N-acetylglucosamine acyltransferase; Provision | 91.07 | |
| cd00710 | 167 | LbH_gamma_CA Gamma carbonic anhydrases (CA): Carbo | 91.06 | |
| COG4284 | 472 | UDP-glucose pyrophosphorylase [Carbohydrate transp | 90.83 | |
| cd05635 | 101 | LbH_unknown Uncharacterized proteins, Left-handed | 90.8 | |
| TIGR01852 | 254 | lipid_A_lpxA acyl-[acyl-carrier-protein]--UDP-N-ac | 90.64 | |
| PRK14352 | 482 | glmU bifunctional N-acetylglucosamine-1-phosphate | 90.62 | |
| cd04647 | 109 | LbH_MAT_like Maltose O-acyltransferase (MAT)-like: | 90.58 | |
| PRK14356 | 456 | glmU bifunctional N-acetylglucosamine-1-phosphate | 90.27 | |
| PLN02296 | 269 | carbonate dehydratase | 90.23 | |
| cd04651 | 104 | LbH_G1P_AT_C Glucose-1-phosphate adenylyltransfera | 90.22 | |
| COG1861 | 241 | SpsF Spore coat polysaccharide biosynthesis protei | 90.04 | |
| TIGR01852 | 254 | lipid_A_lpxA acyl-[acyl-carrier-protein]--UDP-N-ac | 90.03 | |
| PRK14355 | 459 | glmU bifunctional N-acetylglucosamine-1-phosphate | 90.02 | |
| KOG4042 | 190 | consensus Dynactin subunit p27/WS-3, involved in t | 89.98 | |
| PLN02472 | 246 | uncharacterized protein | 89.75 | |
| COG1208 | 358 | GCD1 Nucleoside-diphosphate-sugar pyrophosphorylas | 89.73 | |
| cd03351 | 254 | LbH_UDP-GlcNAc_AT UDP-N-acetylglucosamine O-acyltr | 89.69 | |
| PRK14353 | 446 | glmU bifunctional N-acetylglucosamine-1-phosphate | 89.59 | |
| COG0663 | 176 | PaaY Carbonic anhydrases/acetyltransferases, isole | 89.5 | |
| cd04651 | 104 | LbH_G1P_AT_C Glucose-1-phosphate adenylyltransfera | 89.27 | |
| PLN02694 | 294 | serine O-acetyltransferase | 89.18 | |
| TIGR01173 | 451 | glmU UDP-N-acetylglucosamine diphosphorylase/gluco | 89.13 | |
| PRK11132 | 273 | cysE serine acetyltransferase; Provisional | 88.79 | |
| KOG1461 | 673 | consensus Translation initiation factor 2B, epsilo | 88.71 | |
| TIGR01172 | 162 | cysE serine O-acetyltransferase. Cysteine biosynth | 88.62 | |
| PLN02357 | 360 | serine acetyltransferase | 88.37 | |
| cd03358 | 119 | LbH_WxcM_N_like WcxM-like, Left-handed parallel be | 88.35 | |
| TIGR01208 | 353 | rmlA_long glucose-1-phosphate thymidylylransferase | 88.35 | |
| cd03358 | 119 | LbH_WxcM_N_like WcxM-like, Left-handed parallel be | 88.13 | |
| PRK12461 | 255 | UDP-N-acetylglucosamine acyltransferase; Provision | 87.98 | |
| PF07959 | 414 | Fucokinase: L-fucokinase; InterPro: IPR012887 In t | 87.85 | |
| TIGR03308 | 204 | phn_thr-fam phosphonate metabolim protein, transfe | 87.78 | |
| cd05635 | 101 | LbH_unknown Uncharacterized proteins, Left-handed | 87.7 | |
| PRK14354 | 458 | glmU bifunctional N-acetylglucosamine-1-phosphate | 87.65 | |
| PRK05289 | 262 | UDP-N-acetylglucosamine acyltransferase; Provision | 87.45 | |
| PRK00892 | 343 | lpxD UDP-3-O-[3-hydroxymyristoyl] glucosamine N-ac | 87.38 | |
| cd03356 | 79 | LbH_G1P_AT_C_like Left-handed parallel beta-Helix | 86.5 | |
| PF14602 | 34 | Hexapep_2: Hexapeptide repeat of succinyl-transfer | 86.42 | |
| TIGR03532 | 231 | DapD_Ac 2,3,4,5-tetrahydropyridine-2,6-dicarboxyla | 85.84 | |
| TIGR03532 | 231 | DapD_Ac 2,3,4,5-tetrahydropyridine-2,6-dicarboxyla | 85.83 | |
| cd05787 | 79 | LbH_eIF2B_epsilon eIF-2B epsilon subunit, central | 85.55 | |
| cd04646 | 164 | LbH_Dynactin_6 Dynactin 6 (or subunit p27): Dynact | 85.53 | |
| TIGR01853 | 324 | lipid_A_lpxD UDP-3-O-[3-hydroxymyristoyl] glucosam | 84.74 | |
| cd05824 | 80 | LbH_M1P_guanylylT_C Mannose-1-phosphate guanylyltr | 84.17 | |
| PRK09451 | 456 | glmU bifunctional N-acetylglucosamine-1-phosphate | 84.15 | |
| COG1044 | 338 | LpxD UDP-3-O-[3-hydroxymyristoyl] | 84.09 | |
| PRK11830 | 272 | dapD 2,3,4,5-tetrahydropyridine-2,6-carboxylate N- | 83.83 | |
| KOG1462 | 433 | consensus Translation initiation factor 2B, gamma | 83.62 | |
| PRK00892 | 343 | lpxD UDP-3-O-[3-hydroxymyristoyl] glucosamine N-ac | 83.45 | |
| PRK09527 | 203 | lacA galactoside O-acetyltransferase; Reviewed | 83.44 | |
| PRK14360 | 450 | glmU bifunctional N-acetylglucosamine-1-phosphate | 83.42 | |
| cd00710 | 167 | LbH_gamma_CA Gamma carbonic anhydrases (CA): Carbo | 83.27 | |
| PLN02739 | 355 | serine acetyltransferase | 83.07 | |
| PRK00844 | 407 | glgC glucose-1-phosphate adenylyltransferase; Prov | 82.94 | |
| PRK10191 | 146 | putative acyl transferase; Provisional | 82.39 | |
| cd03353 | 193 | LbH_GlmU_C N-acetyl-glucosamine-1-phosphate uridyl | 82.29 | |
| cd03350 | 139 | LbH_THP_succinylT 2,3,4,5-tetrahydropyridine-2,6-d | 80.96 | |
| cd03357 | 169 | LbH_MAT_GAT Maltose O-acetyltransferase (MAT) and | 80.85 | |
| TIGR03570 | 201 | NeuD_NnaD sugar O-acyltransferase, sialic acid O-a | 80.75 | |
| cd03354 | 101 | LbH_SAT Serine acetyltransferase (SAT): SAT cataly | 80.37 | |
| COG1043 | 260 | LpxA Acyl-[acyl carrier protein] | 80.07 | |
| cd03352 | 205 | LbH_LpxD UDP-3-O-acyl-glucosamine N-acyltransferas | 80.02 |
| >KOG2638 consensus UDP-glucose pyrophosphorylase [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.9e-113 Score=853.08 Aligned_cols=461 Identities=62% Similarity=1.009 Sum_probs=443.3
Q ss_pred HHHHHHHHHHhh-hhcccChhHHHHHHHHHHHHhhcCCCCccCCccccCCCCccccCCCCCCCCCChhhHHHhccceeEE
Q 012172 5 AEKLTQLKSAVA-GLNQISENEKNGFINLVARYLSGEAQHVEWSKIQTPTDKIVVPCDSLAPVPEDPAETKKLLDKLVVL 83 (469)
Q Consensus 5 ~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~g~~~l~k~avv 83 (469)
+++|+++..+.+ .-+++++.+++.|.++|+||+.+....++|+.|+|++++.+++|++++.. +.+.++|+|+||+
T Consensus 32 k~~l~~l~~~~~~~~k~~~~~e~~~F~~Lf~RyL~~~~~~~~wdkI~~p~~d~vv~y~~i~~~----~~~~~~L~KLavl 107 (498)
T KOG2638|consen 32 KNELDKLLSTSEPEDKNHFKTELSGFFNLFSRYLREKAPTIDWDKIRPPPEDAVVPYDDIKNV----ELSKSLLNKLAVL 107 (498)
T ss_pred HHHHHhccccCchhhhhcchhhHHHHHHHHHHHHhccCCccchhhccCCChhhccccccccch----hhHHHhhhheEEE
Confidence 556666666653 33457789999999999999999989999999999999999999999742 6788999999999
Q ss_pred EEcCCCCCcCCCCCCccccccCCCCchHHHHHHHHHHhhhhcCCcccEEEecCCCChHHHHHHHHHhcCCCCceEEEEec
Q 012172 84 KLNGGLGTTMGCTGPKSVIEVRNGLTFLDLIVIQIENLNAKYGCNVPLLLMNSFNTHDDTSKIIEKYSKSNVEIHTFNQS 163 (469)
Q Consensus 84 iLAGG~GTRmg~~~PK~l~~v~~gks~L~~~~~~i~~l~~~~~~~iplviMtS~~t~e~t~~~~~~~~g~~~~i~~f~Q~ 163 (469)
+|+||+||.|||.+||++++|+.|.||||+.++|++.|+++|++++|+++|||++|+++|++++++|.+++.+|++|.|+
T Consensus 108 KLNGGlGttmGc~gPKS~ieVR~g~tFLDL~V~QIe~LN~~Y~~dVPlvLMNSfnTdedT~kil~ky~~~kv~i~TF~QS 187 (498)
T KOG2638|consen 108 KLNGGLGTTMGCKGPKSVIEVRDGLTFLDLTVRQIENLNKTYNVDVPLVLMNSFNTDEDTQKILKKYAGSKVDIKTFNQS 187 (498)
T ss_pred EecCCcCCccccCCCceeEEEcCCCchhHHHHHHHHHHHhhcCCCCCEEEecccccchHHHHHHHHhcCCceeEEEeccc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999988899999999
Q ss_pred CcceecCCCCcccCC-CCCCCCcccccCCCcccchhccccchHHHHHHcCCcEEEEEeCccccccccHHHHHHHHHcCCc
Q 012172 164 QYPRLCADDFVPLPC-KGKTDKDGWYPPGHGDVFPSLMNSGKLDALISQGKEYVFAANSDNLGAIVDLKILNHLIQNKNE 242 (469)
Q Consensus 164 ~~P~l~~~~~~~~~~-~~~~~~~~~~P~GhGd~~~~L~~sg~L~~l~~~G~~~v~v~n~DNL~~~~dp~~Lg~~~~~~~~ 242 (469)
++|+++.++++|++. .+++...+||||||||+|.+|+.||+|++|+++|+||+||+|+|||++++|+.+|.++++++.+
T Consensus 188 ~~PRi~~etlLPv~~~~~d~~~d~WYPPGHGd~f~sl~nSG~Ld~llaqGkEylFVSNiDNLGAtvDL~ILn~~i~~~~e 267 (498)
T KOG2638|consen 188 KYPRIDKETLLPVPKLEADSDNEAWYPPGHGDLFDSLHNSGLLDKLLAQGKEYLFVSNIDNLGATVDLNILNHVINNNIE 267 (498)
T ss_pred cCCccccccccCCCcccCCCCcccccCCCCccHHHHHhccchHHHHHhCCceEEEEeccccccceeeHHHHHHHhcCCCc
Confidence 999999999999997 5666789999999999999999999999999999999999999999999999999999999999
Q ss_pred ceEEEeeeccCCCcceEEEEeCCeeEEEEeccCChhhhhhccccccccEEEEEeEEEeHHHHHHHHHhcccccccccCCC
Q 012172 243 YCMEVTPKTLADVKGGTLISYEGKVQLLEIAQVPDEHVNEFKSIEKFKIFNTNNLWVNLKAIKRLVEADALKMEIIPNPK 322 (469)
Q Consensus 243 ~~~~v~~k~~~~~~~G~iv~~~g~~~ivEy~~~~~e~~~~~~~~~~~~~~Nt~~~~~~l~~L~~~l~~~~~~lp~~~n~K 322 (469)
+.|+|++||.+|.+||+++.++|+++++|++|+|++++++|.+.++|++|||||+|+++.++++++++..+.|++|.|+|
T Consensus 268 y~MEvTdKT~aDvKgGtLi~y~G~lrlLEiaQVP~ehv~eFkS~kkFkifNTNNlWinLkavKrlve~~~l~meIi~N~k 347 (498)
T KOG2638|consen 268 YLMEVTDKTRADVKGGTLIQYEGKLRLLEIAQVPKEHVDEFKSIKKFKIFNTNNLWINLKAVKKLVEENALNMEIIVNPK 347 (498)
T ss_pred eEEEecccchhhcccceEEeecCEEEEEEeccCChhHhhhhccceeEEEeccCCeEEehHHHHHHhhcCcccceeecChh
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cCC-CcceehhHHHhhhHhhhcccceeEeecCccccccCCchhHHHHHHHHHHhhcCceeecCCccCCCCCeEEECCCcc
Q 012172 323 EVD-GIKVLQLETAAGAAIRFFDHAIGCNVHRSRFLPVKATSDLLLVQSDLYTLADGFVTRNEARKNPANPTIELGPEFK 401 (469)
Q Consensus 323 ~~~-g~~~iqle~~~~d~~~~~~~~~~v~v~r~eF~pVKn~~dL~~~~~~~~~l~~g~l~~~~~r~~~~~p~V~l~~~~~ 401 (469)
+++ +..++||||++|+||++|+++.++.|+|+||+|||+++||++++|++|.+++|.+.++|.|+.+..|.|.|+++|+
T Consensus 348 ti~~~~~viQleTa~GaaIk~F~na~gv~VpRsRFlPVKt~sDLlLv~S~Ly~ld~Gsl~l~~~r~~~t~P~vkLg~~F~ 427 (498)
T KOG2638|consen 348 TIDRGIEVIQLETAAGAAIKFFDNAIGVNVPRSRFLPVKTCSDLLLVMSNLYDLDNGSLTLSPSRFGPTPPLVKLGSEFK 427 (498)
T ss_pred hccCCceEEEEhhhhhHHHHhCCCceeeeccccccccccccccceeeecceeeccCCeEEechhhcCCCCCeeecchhhh
Confidence 998 7889999999999999999999999999999999999999999999999999999999999988999999999999
Q ss_pred cccccccccccCCcccccCceEEEeeEEECCCcEEeeeEEEEecCCCceeeCCCCeeecceecCCCCC
Q 012172 402 KVGNFLSRFKSIPSIIELDSLKVTGDVWFGANITLKGKVTIAAKSGEKLEIPDGAVLENKEINGPGDL 469 (469)
Q Consensus 402 ~~~~~~~~i~~~p~~~~~~~l~v~G~v~fg~~V~i~g~~~I~~~~~~~~~I~~~s~le~~~v~~~~~~ 469 (469)
++++|..||+++|+|+++++|+|.|||+||+||+++|+|+|.|++|++++||+||||||++|.+||||
T Consensus 428 kv~~f~~rfp~iP~ileLdhLtVsGdV~FGknV~LkGtViIia~~~~~i~IP~gsVLEn~~v~gn~~i 495 (498)
T KOG2638|consen 428 KVEDFLGRFPGIPDILELDHLTVSGDVWFGKNVSLKGTVIIIANEGDRIDIPDGSVLENKIVSGNLRI 495 (498)
T ss_pred HHHHHHhcCCCCCccceeceEEEeccEEeccceEEeeEEEEEecCCCeeecCCCCeeecceEeccccc
Confidence 99999999999999999999999999999999999999999999999999999999999999999997
|
|
| >PLN02474 UTP--glucose-1-phosphate uridylyltransferase | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.5e-112 Score=881.78 Aligned_cols=467 Identities=90% Similarity=1.347 Sum_probs=440.8
Q ss_pred chHHHHHHHHHHhhhhcccChhHHHHHHHHHHHHhhcCCCCccCCccccCCCCccccCCCCCCCCCChhhHHHhccceeE
Q 012172 3 TDAEKLTQLKSAVAGLNQISENEKNGFINLVARYLSGEAQHVEWSKIQTPTDKIVVPCDSLAPVPEDPAETKKLLDKLVV 82 (469)
Q Consensus 3 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~g~~~l~k~av 82 (469)
+...++.++...+..+...++.+++.|.++|++|++++.+.|+|+.|+|++++.+++|++++..+.......++|+|+||
T Consensus 3 ~~~~~~~~~~~~~~~~~~~~~~e~~~f~~~~~~~~~~~~~~i~~~~i~~~~~~~~~~~~~l~~~~~~~~~~~~~L~k~av 82 (469)
T PLN02474 3 TADEKLPQLRSAVAGLDQISENEKSGFISLVSRYLSGEAQHIEWSKIQTPTDEVVVPYDKLAPVPEDPEETKKLLDKLVV 82 (469)
T ss_pred chhhHHHHHHHHHhhhhhhhHHHHHHHHHHHHHHHhCCCCeecHHHccCCchhhCcChhhccccccchhHHHHHHhcEEE
Confidence 33444555666566667777889999999999999999889999999999999999999997544344567889999999
Q ss_pred EEEcCCCCCcCCCCCCccccccCCCCchHHHHHHHHHHhhhhcCCcccEEEecCCCChHHHHHHHHHhcCCCCceEEEEe
Q 012172 83 LKLNGGLGTTMGCTGPKSVIEVRNGLTFLDLIVIQIENLNAKYGCNVPLLLMNSFNTHDDTSKIIEKYSKSNVEIHTFNQ 162 (469)
Q Consensus 83 viLAGG~GTRmg~~~PK~l~~v~~gks~L~~~~~~i~~l~~~~~~~iplviMtS~~t~e~t~~~~~~~~g~~~~i~~f~Q 162 (469)
|+||||||||||+++||++++|++|+||||++++|+++++++||++|||+||||+.||++|++||++|...+.+|++|.|
T Consensus 83 lkLnGGlGTrmG~~~PKs~i~v~~~~sfldl~~~qi~~l~~~~g~~vPl~iMtS~~T~~~T~~~l~k~~~~~~~i~~F~Q 162 (469)
T PLN02474 83 LKLNGGLGTTMGCTGPKSVIEVRNGLTFLDLIVIQIENLNKKYGCNVPLLLMNSFNTHDDTQKIVEKYTNSNIEIHTFNQ 162 (469)
T ss_pred EEecCCcccccCCCCCceeEEcCCCCcHHHHHHHHHHHHHHHcCCCceEEEECCCchhHHHHHHHHHcCCCccceEEEec
Confidence 99999999999999999999999999999999999999999999999999999999999999999998876778999999
Q ss_pred cCcceecCCCCcccCCCCCCCCcccccCCCcccchhccccchHHHHHHcCCcEEEEEeCccccccccHHHHHHHHHcCCc
Q 012172 163 SQYPRLCADDFVPLPCKGKTDKDGWYPPGHGDVFPSLMNSGKLDALISQGKEYVFAANSDNLGAIVDLKILNHLIQNKNE 242 (469)
Q Consensus 163 ~~~P~l~~~~~~~~~~~~~~~~~~~~P~GhGd~~~~L~~sg~L~~l~~~G~~~v~v~n~DNL~~~~dp~~Lg~~~~~~~~ 242 (469)
+++||++.+|+++++++....+.+|+|+||||+|.+|+.||+|++|+++|++|+||+|+|||++++||.||||++.++++
T Consensus 163 ~~~P~l~~~~~~p~~~~~~~~~~~~~P~GhGd~y~aL~~sG~Ld~l~~~G~eyifv~nvDNLga~vDp~~lg~~~~~~~e 242 (469)
T PLN02474 163 SQYPRVVADDFVPWPSKGKTDKDGWYPPGHGDVFPSLMNSGKLDALLSQGKEYVFIANSDNLGAIVDLKILNHLIQNKNE 242 (469)
T ss_pred CceeeEecCCCCcccccCCCCcceeeeCCCchHHHHHHhCChHHHHHhcCCEEEEEEecCccccccCHHHHHHHHhcCCc
Confidence 99999999999999876545678899999999999999999999999999999999999999999999999999999999
Q ss_pred ceEEEeeeccCCCcceEEEEeCCeeEEEEeccCChhhhhhccccccccEEEEEeEEEeHHHHHHHHHhcccccccccCCC
Q 012172 243 YCMEVTPKTLADVKGGTLISYEGKVQLLEIAQVPDEHVNEFKSIEKFKIFNTNNLWVNLKAIKRLVEADALKMEIIPNPK 322 (469)
Q Consensus 243 ~~~~v~~k~~~~~~~G~iv~~~g~~~ivEy~~~~~e~~~~~~~~~~~~~~Nt~~~~~~l~~L~~~l~~~~~~lp~~~n~K 322 (469)
++|+|++|+.+++++|++|+++|+++++||+|+|++++++|++..+|++||||||||++++|+++++...++++.|.|+|
T Consensus 243 ~~~ev~~Kt~~d~kgG~l~~~dgk~~lvEysqvp~e~~~~f~~~~kf~~fNtnn~w~~L~~l~~~~~~~~l~~~~I~n~k 322 (469)
T PLN02474 243 YCMEVTPKTLADVKGGTLISYEGKVQLLEIAQVPDEHVNEFKSIEKFKIFNTNNLWVNLKAIKRLVEADALKMEIIPNPK 322 (469)
T ss_pred eEEEEeecCCCCCCccEEEEECCEEEEEEEecCCHHHHHhhcccccceeeeeeeEEEEHHHHHHHhhcCCCCceeecCCC
Confidence 99999999999999999999999999999999999999999999999999999999999999999987778999999999
Q ss_pred cCCCcceehhHHHhhhHhhhcccceeEeecCccccccCCchhHHHHHHHHHHhhcCceeecCCccCCCCCeEEECCCccc
Q 012172 323 EVDGIKVLQLETAAGAAIRFFDHAIGCNVHRSRFLPVKATSDLLLVQSDLYTLADGFVTRNEARKNPANPTIELGPEFKK 402 (469)
Q Consensus 323 ~~~g~~~iqle~~~~d~~~~~~~~~~v~v~r~eF~pVKn~~dL~~~~~~~~~l~~g~l~~~~~r~~~~~p~V~l~~~~~~ 402 (469)
+++|.+++|||||+||+|++|+++.+++|+|+||+||||++||+++|||+|.+.++|+..+|.|..+..|.|+|+|.|++
T Consensus 323 ~~~g~kv~q~Et~ig~ai~~f~~~~~v~VpR~rF~PVK~~~dll~~rsdly~l~~~~l~~~~~~~~~~~p~IeL~~~f~~ 402 (469)
T PLN02474 323 EVDGVKVLQLETAAGAAIRFFDNAIGINVPRSRFLPVKATSDLLLVQSDLYTLVDGFVIRNKARTNPSNPSIELGPEFKK 402 (469)
T ss_pred CCCCeeEEEeHHHHHHHHHhCCCceEEEEchhhccCCCCCCCHHHHHHHHHHhccCeEEecCcccCCCCCcEEECccccc
Confidence 99888999999999999999999999999999999999999999999999999999999999987778899999999999
Q ss_pred ccccccccccCCcccccCceEEEeeEEECCCcEEeeeEEEEecCCCceeeCCCCeeecceecCCCCC
Q 012172 403 VGNFLSRFKSIPSIIELDSLKVTGDVWFGANITLKGKVTIAAKSGEKLEIPDGAVLENKEINGPGDL 469 (469)
Q Consensus 403 ~~~~~~~i~~~p~~~~~~~l~v~G~v~fg~~V~i~g~~~I~~~~~~~~~I~~~s~le~~~v~~~~~~ 469 (469)
+++|++||+++|||++|++|+|+|||+||+||+++|+|+|.|++|++++||+|++||+++|.+++|+
T Consensus 403 v~~f~~rf~~iPsl~~~d~LtV~Gdv~fG~~v~l~G~v~i~~~~~~~~~ip~g~~l~~~~~~~~~~~ 469 (469)
T PLN02474 403 VANFLSRFKSIPSIVELDSLKVSGDVWFGSGIVLKGKVTITAKSGVKLEIPDGAVLENKDINGPEDL 469 (469)
T ss_pred HHhHHHhcCCCCCcccCCeEEEeeeeEECCCcEEEEEEEEEcCCCCeeecCCCcEecceeecccCCC
Confidence 9999999999999999999999999999999999999999999999999999999999999999985
|
|
| >PF01704 UDPGP: UTP--glucose-1-phosphate uridylyltransferase; InterPro: IPR002618 This family consists of UTP--glucose-1-phosphate uridylyltransferases (2 | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.3e-98 Score=779.64 Aligned_cols=413 Identities=51% Similarity=0.850 Sum_probs=367.3
Q ss_pred HHHHHHHHHHHHhhc-CCCCccCCccccCCCCccccCCCCCCCCCChhhHHHhccceeEEEEcCCCCCcCCCCCCccccc
Q 012172 25 EKNGFINLVARYLSG-EAQHVEWSKIQTPTDKIVVPCDSLAPVPEDPAETKKLLDKLVVLKLNGGLGTTMGCTGPKSVIE 103 (469)
Q Consensus 25 ~~~~~~~~~~~~~~~-~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~g~~~l~k~avviLAGG~GTRmg~~~PK~l~~ 103 (469)
+++.|.++|++|+++ .++.++|+.|+|++++++.+|++++...-....+..+++|+|||+||||||||||+++||++++
T Consensus 1 e~~~f~~l~~~yl~~~~~~~~~~~~i~~~~~~~~~~~~~l~~~~~~~~~~~~~~~kvavl~LaGGlGTrlG~~~pK~~~~ 80 (420)
T PF01704_consen 1 ELDSFFSLFRRYLSESKSHQIDWDKIMPPPPEEVVDYESLKEYEWDEGLEAIALGKVAVLKLAGGLGTRLGCSGPKGLIP 80 (420)
T ss_dssp HHHHHHHHHHHHHHCCCCCS--GGGEEE-GTGCEEEHHHHHHSCHHHHHHHHHTTCEEEEEEEESBSGCCTESSBGGGSE
T ss_pred ChHHHHHHHHHHHHhcccCCcccccCCCCChhhcCChhHhcccccccchhHHhhCCEEEEEEcCcccCccCCCCCCccee
Confidence 578999999999998 5679999999999999888998886311012356777899999999999999999999999999
Q ss_pred cCCCCchHHHHHHHHHHhhhhcCCcccEEEecCCCChHHHHHHHHHhcCCCCceEEEEecCcceecCCCCcccCCCC-CC
Q 012172 104 VRNGLTFLDLIVIQIENLNAKYGCNVPLLLMNSFNTHDDTSKIIEKYSKSNVEIHTFNQSQYPRLCADDFVPLPCKG-KT 182 (469)
Q Consensus 104 v~~gks~L~~~~~~i~~l~~~~~~~iplviMtS~~t~e~t~~~~~~~~g~~~~i~~f~Q~~~P~l~~~~~~~~~~~~-~~ 182 (469)
|+.|+||||++++|+++++++||+.|||+||||+.||++|++||++|++.+.+|.+|+|+++||++.+|++++.++. ++
T Consensus 81 v~~~~t~ldl~~~qi~~l~~~~~~~iPl~iMtS~~T~~~T~~~l~kyfg~~~~v~~F~Q~~~P~i~~d~~~~l~~~~~~~ 160 (420)
T PF01704_consen 81 VREGKTFLDLIVEQIEALNKKYGVDIPLYIMTSFNTHEDTRKFLEKYFGLDVDVFFFKQSKLPAIDADGKLPLESKPKDS 160 (420)
T ss_dssp EETTEEHHHHHHHHHHHHHHHHTTT-EEEEEEETTTHHHHHHHHHHGCGSSCCEEEEEE-EEEEEETTTTCBEEETTEES
T ss_pred cCCcccHHHHHHHHHHHHhccccccceEEEecCcccHHHHHHHHHHhcCCCcceEEEeecCcceEeCCCccccccccccc
Confidence 99999999999999999999999999999999999999999999999986556999999999999999999999864 22
Q ss_pred -CCcccccCCCcccchhccccchHHHHHHcCCcEEEEEeCccccccccHHHHHHHHHcCCcceEEEeeeccCCCcceEEE
Q 012172 183 -DKDGWYPPGHGDVFPSLMNSGKLDALISQGKEYVFAANSDNLGAIVDLKILNHLIQNKNEYCMEVTPKTLADVKGGTLI 261 (469)
Q Consensus 183 -~~~~~~P~GhGd~~~~L~~sg~L~~l~~~G~~~v~v~n~DNL~~~~dp~~Lg~~~~~~~~~~~~v~~k~~~~~~~G~iv 261 (469)
...+|+|+||||+|.+|.+||+|++|+++|++|+||+|+|||++++||.+|||+++++++++|+|++|+.+++++|++|
T Consensus 161 ~~~~~w~P~GhGdi~~aL~~sG~Ld~l~~~G~eyifv~nvDNL~a~~Dp~~lG~~~~~~~~~~~evv~Kt~~dek~Gvl~ 240 (420)
T PF01704_consen 161 IAEDEWYPPGHGDIYRALYNSGLLDKLLARGIEYIFVSNVDNLGAVVDPVFLGYMIEKNADFGMEVVPKTSPDEKGGVLC 240 (420)
T ss_dssp EEEGGEEE-TGGGHHHHHHHTTHHHHHHHTT--EEEEEETTBTT-TT-HHHHHHHHHTT-SEEEEEEE-CSTTTSSEEEE
T ss_pred cchhhccCCCCcceehhhhccChHHHHHHcCCeEEEEEecCCcccccCHHHHHHHHhccchhheeeeecCCCCCceeEEE
Confidence 2457999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EeCCeeEEEEeccCChhhhhhccccccccEEEEEeEEEeHHHHHHHHHhcccccccccCCCcCC----CcceehhHHHhh
Q 012172 262 SYEGKVQLLEIAQVPDEHVNEFKSIEKFKIFNTNNLWVNLKAIKRLVEADALKMEIIPNPKEVD----GIKVLQLETAAG 337 (469)
Q Consensus 262 ~~~g~~~ivEy~~~~~e~~~~~~~~~~~~~~Nt~~~~~~l~~L~~~l~~~~~~lp~~~n~K~~~----g~~~iqle~~~~ 337 (469)
+++|+++++||+|+|++++++|++..++..|||||+||++++|+++++...+.||+|+|+|+++ +.+++|||++++
T Consensus 241 ~~~G~~~vvEysqip~~~~~~~~~~~~~~~FntnNi~~~l~~l~~~~~~~~~~Lp~h~a~Kki~~~d~~~~~~q~Et~i~ 320 (420)
T PF01704_consen 241 RYDGKLQVVEYSQIPKEHMAEFKDIKGFLLFNTNNIWFSLDFLKRLLERDELQLPIHVAKKKIPYVDNGIKVIQFETAIG 320 (420)
T ss_dssp EETTEEEEEEGGGS-HHGHHHHTSTTTSBEEEEEEEEEEHHHHHHHHHTTTCCS-EEEEEEESSEECTEEEEEEEECGGG
T ss_pred EeCCccEEEEeccCCHHHHHhhhccccceEEEeceeeEEHHHHHHHHHhccccCccEEcchhcccccCCccEEeehhhhh
Confidence 9999999999999999999999988999999999999999999999998889999999999993 678999999999
Q ss_pred hHhhhcccceeEeecCccccccCCchhHHHHHHHHHHhhcCceeecCCccCCCCCeEEECCCcccccccccccccCCccc
Q 012172 338 AAIRFFDHAIGCNVHRSRFLPVKATSDLLLVQSDLYTLADGFVTRNEARKNPANPTIELGPEFKKVGNFLSRFKSIPSII 417 (469)
Q Consensus 338 d~~~~~~~~~~v~v~r~eF~pVKn~~dL~~~~~~~~~l~~g~l~~~~~r~~~~~p~V~l~~~~~~~~~~~~~i~~~p~~~ 417 (469)
+++..|.++.+++|+|+||+||||++||+.++||+|.++.|.+.++|.|.....|.|.|++.|+++++|.+||+.+|||+
T Consensus 321 ~~i~~f~~~~~v~V~R~rF~PvKn~~dLl~~~Sd~y~~~~~~~~~~~~~~~~~~p~i~lg~~f~~v~~~~~r~~~ip~l~ 400 (420)
T PF01704_consen 321 FAIFQFDNSFAVEVPRDRFAPVKNTSDLLLVRSDLYDLDDGTLVRNPLRAFHTRPLIKLGDHFKKVDDFEKRFPSIPSLL 400 (420)
T ss_dssp GGGGGCTSEEEEEE-GGG--B-SSHHHHHHHHSTTEEEETTEEEEHCCHCSSCHHEEEECGGGSSHHHHHHHBSSS-BET
T ss_pred chHhhccCcEEEEEcHHHcCCccccCcceeeccceeccccceeeecccccCCCCCeeccCcccCchHHhhhhcCCCCCcc
Confidence 99999999999999999999999999999999999999999999999998778899999999999999999999999999
Q ss_pred ccCceEEEeeEEECCCcEEe
Q 012172 418 ELDSLKVTGDVWFGANITLK 437 (469)
Q Consensus 418 ~~~~l~v~G~v~fg~~V~i~ 437 (469)
++++|+|.|||+||+||+|+
T Consensus 401 ~~~~l~v~gdv~fg~~v~lk 420 (420)
T PF01704_consen 401 ELDSLTVSGDVTFGKNVVLK 420 (420)
T ss_dssp TEEEEEEESSEEE-TT-EEE
T ss_pred cCCcceEecceEECCCcEeC
Confidence 99999999999999999985
|
7.7.9 from EC). Also known as UDP-glucose pyrophosphorylase (UDPGP) and Glucose-1-phosphate uridylyltransferase. UTP--glucose-1-phosphate uridylyltransferase catalyses the interconversion of MgUTP + glucose-1-phosphate and UDP-glucose + MgPPi []. UDP-glucose is an important intermediate in mammalian carbohydrate interconversion involved in various metabolic roles depending on tissue type []. In Dictyostelium discoideum (Slime mold), mutants in this enzyme abort the development cycle []. Also within this family is UDP-N-acetylglucosamine pyrophosphorylase (Q16222 from SWISSPROT) [] and two hypothetical proteins from Borrelia burgdorferi, the Lyme disease spirochaete (O51893 from SWISSPROT and O51036 from SWISSPROT).; GO: 0016779 nucleotidyltransferase activity, 0008152 metabolic process; PDB: 2OEG_A 2OEF_A 2YQS_A 2YQJ_A 2YQH_B 2YQC_A 3OH4_A 3OGZ_A 3OH3_A 3OH1_A .... |
| >PLN02830 UDP-sugar pyrophosphorylase | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.1e-88 Score=729.03 Aligned_cols=453 Identities=21% Similarity=0.241 Sum_probs=401.2
Q ss_pred HHHHHHHHHHhhhhcccChhHHHHHHHHHHHHhhcC-CCCccCCccccC-CCCccccCCCCCCCCCChhhHHHhccceeE
Q 012172 5 AEKLTQLKSAVAGLNQISENEKNGFINLVARYLSGE-AQHVEWSKIQTP-TDKIVVPCDSLAPVPEDPAETKKLLDKLVV 82 (469)
Q Consensus 5 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~p~-~~~~~~~~~~~~~~~~~~~~g~~~l~k~av 82 (469)
.++.++|++++..++..|++++..|++.+++++.++ ++.++|++|+|. +++...+|++.. ...+++.|+++|+|+||
T Consensus 53 ~~e~~~L~~qL~~ld~~y~g~l~~~~~~~~~~l~~s~~~~~~~~~i~P~vp~~~~~~~~~~~-~~~~~~~Gl~~l~kvav 131 (615)
T PLN02830 53 DDDKRRLLEQVARLDESYPGGLAAYVSNAKELLADSKEGVNPFEGWTPSVPEGEVLEYGSEE-FVELEEAGLREAGNAAF 131 (615)
T ss_pred HHHHHHHHHHHHhccccccchHHHHHHHHHHHHhhcccCCCchhhcccCCCccccccccchh-hhHHHHHHHHHhCcEEE
Confidence 567889999999999899999999999999999976 679999999994 666677787753 33456789999999999
Q ss_pred EEEcCCCCCcCCCCCCcccccc--CCCCchHHHHHHHHHHhhh-------hcCCcccEEEecCCCChHHHHHHHHHh--c
Q 012172 83 LKLNGGLGTTMGCTGPKSVIEV--RNGLTFLDLIVIQIENLNA-------KYGCNVPLLLMNSFNTHDDTSKIIEKY--S 151 (469)
Q Consensus 83 viLAGG~GTRmg~~~PK~l~~v--~~gks~L~~~~~~i~~l~~-------~~~~~iplviMtS~~t~e~t~~~~~~~--~ 151 (469)
|+||||||||||+++||+++|+ ++|+||||+++++|++++. .+++.|||+||||++||++|++||++| +
T Consensus 132 llLaGGlGTRLG~~~pK~~lpv~~~~gkt~lql~~e~I~~lq~la~~~~~~~~~~IPl~IMTS~~T~~~T~~~~~~n~~F 211 (615)
T PLN02830 132 VLVAGGLGERLGYSGIKVALPTETATGTCYLQLYIESILALQERAKKRKAKKGRKIPLVIMTSDDTHARTLKLLERNDYF 211 (615)
T ss_pred EEecCCcccccCCCCCCcceecccCCCCcHHHHHHHHHHHHHHHHHHhcccCCCCceEEEECCcchhHHHHHHHHHCCcc
Confidence 9999999999999999999998 7999999999999999954 467899999999999999999999984 4
Q ss_pred C-CCCceEEEEecCcceecCC-CCcccCCCCCCCCcccccCCCcccchhccccchHHHHHHcCCcEEEEEeCcc-ccccc
Q 012172 152 K-SNVEIHTFNQSQYPRLCAD-DFVPLPCKGKTDKDGWYPPGHGDVFPSLMNSGKLDALISQGKEYVFAANSDN-LGAIV 228 (469)
Q Consensus 152 g-~~~~i~~f~Q~~~P~l~~~-~~~~~~~~~~~~~~~~~P~GhGd~~~~L~~sg~L~~l~~~G~~~v~v~n~DN-L~~~~ 228 (469)
| .+++|++|+|+++||++.+ ++++++ +.++++++|+|+||||+|.+|++||+|++|+++|++|+||+|+|| |+..+
T Consensus 212 Gl~~~~v~~F~Q~~~P~~~~~~g~~~l~-~~d~~~i~~~P~GhGdi~~aL~~sGlLd~l~~~G~~yi~v~~vDN~L~~~A 290 (615)
T PLN02830 212 GMDPDQVTLLKQEKVACLMDNDARLALD-PNDPYKIQTKPHGHGDVHALLYSSGLLDKWLSAGKKWVVFFQDTNGLVFKA 290 (615)
T ss_pred CCCccceEEEEcCcceeEecCCCccccc-CCCCCccccCCCCccHHHHHHHHCCCHHHHHHcCCEEEEEEeccchhhhcc
Confidence 6 5678999999999999876 555554 444589999999999999999999999999999999999999999 99999
Q ss_pred cHHHHHHHHHcCCcceEEEeeeccCCCcceEEEE---eCCe--eEEEEeccCChhhhhhc------cccccccEE--EEE
Q 012172 229 DLKILNHLIQNKNEYCMEVTPKTLADVKGGTLIS---YEGK--VQLLEIAQVPDEHVNEF------KSIEKFKIF--NTN 295 (469)
Q Consensus 229 dp~~Lg~~~~~~~~~~~~v~~k~~~~~~~G~iv~---~~g~--~~ivEy~~~~~e~~~~~------~~~~~~~~~--Nt~ 295 (469)
||.||||++.++++|+++|++| .+.++.|++|+ .||+ +++|||+++++...... .+...|++| |||
T Consensus 291 dp~flG~~~~~~~d~~~kvv~K-~~~E~vGvi~~~~~~dG~~l~~vVEYse~~~ll~~a~~p~g~l~~~~~~s~FPgNtN 369 (615)
T PLN02830 291 IPAALGVSATKGFDMNSLAVPR-KAKEAIGAIAKLTHKDGREMVINVEYNQLDPLLRATGHPDGDVNDETGYSPFPGNIN 369 (615)
T ss_pred cHHHhHHHHhcCCceEEEEEEC-CCCcccceEEEEecCCCCeeeEEEeecccCHHHHhccCCCcccccccccccCCCCce
Confidence 9999999999999999999999 67799999998 5777 57899999876532211 122458899 999
Q ss_pred eEEEeHHHHHHHHHhcccccccccCCCcCC-CcceehhHHHhhhHhhhcccceeE------ee--cCccccccCCc-h--
Q 012172 296 NLWVNLKAIKRLVEADALKMEIIPNPKEVD-GIKVLQLETAAGAAIRFFDHAIGC------NV--HRSRFLPVKAT-S-- 363 (469)
Q Consensus 296 ~~~~~l~~L~~~l~~~~~~lp~~~n~K~~~-g~~~iqle~~~~d~~~~~~~~~~v------~v--~r~eF~pVKn~-~-- 363 (469)
++|+++.+|+++++++.+.||+|+|+|+.+ ++.++|+|+++++||++|+++..+ .| +|.+|+||||+ +
T Consensus 370 ~L~v~L~a~~~~l~~~~~~lp~ivNpK~~d~~~~v~q~~trle~~mq~f~~~~~~~~~vg~~v~~~~~~f~PVKn~~s~a 449 (615)
T PLN02830 370 QLILKLGPYVKELAKTGGVIEEFVNPKYKDATKTAFKSPTRLECMMQDYPKTLPPSAKVGFTVFDNWLAYSPVKNSPADG 449 (615)
T ss_pred eeEeeHHHHHHHHHhCCCccceeccCcccCCCCceeecchHHHHHHHHHhhhcCcccccCceecCchheeccccCChHHh
Confidence 999999999999998889999999999998 678999999999999999987666 77 66799999999 7
Q ss_pred ------------------------hHHHHHHHHHHhhcCceeecCCccCCCCCeEEECCCcc-ccccccccc-ccCCccc
Q 012172 364 ------------------------DLLLVQSDLYTLADGFVTRNEARKNPANPTIELGPEFK-KVGNFLSRF-KSIPSII 417 (469)
Q Consensus 364 ------------------------dL~~~~~~~~~l~~g~l~~~~~r~~~~~p~V~l~~~~~-~~~~~~~~i-~~~p~~~ 417 (469)
+|++.++++|.+..+.....+.+.....|.|.|+|.|+ ++++|++|| +++|+|+
T Consensus 450 ~~k~~~~~~~~~~~s~e~d~y~~~~llL~~s~~~~~~~~~~~~~~~~~~~~~P~I~L~p~f~~~~~~~~~k~~~~~~si~ 529 (615)
T PLN02830 450 AAKVPEGNPTHSATSGEMAIYGANCLILRKAGADVEEPVEDVVFNGIEVEVGPRIVLKPAFALTFSELKKKVAPGSVKIS 529 (615)
T ss_pred hhhcccCCCccCcchhhHHHHHHHHHHHHhcCCccccCccccccCCcccCCCCeEEECchhhhHHHHHHHHhcCCCCccc
Confidence 67777778887777766555555557889999999999 999999999 9999999
Q ss_pred ccCceEEEeeEEECCCcEEeeeEEEEecCCCceeeCCCCeeecc
Q 012172 418 ELDSLKVTGDVWFGANITLKGKVTIAAKSGEKLEIPDGAVLENK 461 (469)
Q Consensus 418 ~~~~l~v~G~v~fg~~V~i~g~~~I~~~~~~~~~I~~~s~le~~ 461 (469)
++++|+|+|+++||+||+|+|+++|.+++|++++| ++++++|+
T Consensus 530 ~~s~L~v~G~~~~~~~v~LdG~viI~a~~~~~~~i-~g~~v~N~ 572 (615)
T PLN02830 530 QRSTLVLEGADIVIENLSLDGALVVRAVPGAEVTV-GGLRVKNK 572 (615)
T ss_pred CCCeEEEEeeeEEecCeEEEEEEEEEcCCCCeEEe-cCeEEecC
Confidence 99999999999999999999999999999999999 89999885
|
|
| >cd00897 UGPase_euk Eukaryotic UGPase catalyses the synthesis of UDP-Glucose | Back alignment and domain information |
|---|
Probab=100.00 E-value=3e-82 Score=629.94 Aligned_cols=299 Identities=71% Similarity=1.136 Sum_probs=287.3
Q ss_pred ccceeEEEEcCCCCCcCCCCCCccccccCCCCchHHHHHHHHHHhhhhcCCcccEEEecCCCChHHHHHHHHHhcCCCCc
Q 012172 77 LDKLVVLKLNGGLGTTMGCTGPKSVIEVRNGLTFLDLIVIQIENLNAKYGCNVPLLLMNSFNTHDDTSKIIEKYSKSNVE 156 (469)
Q Consensus 77 l~k~avviLAGG~GTRmg~~~PK~l~~v~~gks~L~~~~~~i~~l~~~~~~~iplviMtS~~t~e~t~~~~~~~~g~~~~ 156 (469)
|+|+|||+||||||||||+++||+|++|++|+||||++++|+++++++||+.|||+||||+.||++|++||++|.+.+.+
T Consensus 1 l~kvavl~LaGG~GTRLG~~~pKg~~~v~~~~s~l~l~~~~i~~l~~~~~~~iPl~iMtS~~T~~~T~~~l~~~~~~~~~ 80 (300)
T cd00897 1 LNKLVVLKLNGGLGTSMGCTGPKSLIEVRDGKTFLDLTVQQIEHLNKTYGVDVPLVLMNSFNTDEDTKKILKKYAGVNVD 80 (300)
T ss_pred CCcEEEEEecCCcccccCCCCCceeeecCCCCcHHHHHHHHHHHHHHHcCCCceEEEECCCcchHHHHHHHHHcCCCccC
Confidence 57999999999999999999999999999999999999999999999999999999999999999999999998776678
Q ss_pred eEEEEecCcceecCCCCcccCCCCCCCCcccccCCCcccchhccccchHHHHHHcCCcEEEEEeCccccccccHHHHHHH
Q 012172 157 IHTFNQSQYPRLCADDFVPLPCKGKTDKDGWYPPGHGDVFPSLMNSGKLDALISQGKEYVFAANSDNLGAIVDLKILNHL 236 (469)
Q Consensus 157 i~~f~Q~~~P~l~~~~~~~~~~~~~~~~~~~~P~GhGd~~~~L~~sg~L~~l~~~G~~~v~v~n~DNL~~~~dp~~Lg~~ 236 (469)
|.+|+|+++||++.+|+++++...++++++|+|+||||+|.+|++||+|++|+++|++|++|+|+|||++++||.||||+
T Consensus 81 v~~F~Q~~~P~~~~~~~~~l~~~~~~~~~~~~P~GhG~i~~aL~~sG~L~~l~~~G~~yi~v~nvDNL~a~~Dp~~lg~~ 160 (300)
T cd00897 81 IHTFNQSRYPRISKETLLPVPSWADSPDEEWYPPGHGDIFESLYNSGLLDTLLAQGKEYLFVSNIDNLGATVDLRILNHM 160 (300)
T ss_pred eEEEecCCcccCccccCccccccCCCcceeeccCCCchHHHHHHHCCcHHHHHhcCCEEEEEEecccccccCCHHHHHHH
Confidence 99999999999999999999844456899999999999999999999999999999999999999999999999999999
Q ss_pred HHcCCcceEEEeeeccCCCcceEEEEeCCeeEEEEeccCChhhhhhccccccccEEEEEeEEEeHHHHHHHHHhcccccc
Q 012172 237 IQNKNEYCMEVTPKTLADVKGGTLISYEGKVQLLEIAQVPDEHVNEFKSIEKFKIFNTNNLWVNLKAIKRLVEADALKME 316 (469)
Q Consensus 237 ~~~~~~~~~~v~~k~~~~~~~G~iv~~~g~~~ivEy~~~~~e~~~~~~~~~~~~~~Nt~~~~~~l~~L~~~l~~~~~~lp 316 (469)
++++++++|||++|+.+++++|++|+++|++++|||+|+|++++++|++..+|++|||||+||++++|+++++...+.||
T Consensus 161 ~~~~~~~~~evv~Kt~~dek~G~l~~~~g~~~vvEyse~p~e~~~~~~~~~~~~~~nt~n~~~~l~~L~~~~~~~~~~lp 240 (300)
T cd00897 161 VDNKAEYIMEVTDKTRADVKGGTLIQYEGKLRLLEIAQVPKEHVDEFKSIKKFKIFNTNNLWVNLKAVKRVVEENALDLE 240 (300)
T ss_pred HhcCCceEEEEeecCCCCCcccEEEEECCEEEEEEeccCCHHHHHhhcCcccceEEEEeEEEEEHHHHHHHHHhccCCCC
Confidence 99999999999999999999999999999999999999999999999998999999999999999999999987778899
Q ss_pred cccCCCcCC-CcceehhHHHhhhHhhhcccceeEeecCccccccCCchhHHHHHHHHHHh
Q 012172 317 IIPNPKEVD-GIKVLQLETAAGAAIRFFDHAIGCNVHRSRFLPVKATSDLLLVQSDLYTL 375 (469)
Q Consensus 317 ~~~n~K~~~-g~~~iqle~~~~d~~~~~~~~~~v~v~r~eF~pVKn~~dL~~~~~~~~~l 375 (469)
+|+|.|+++ +++++|||+|+||+|++|+++.+++|+|+||+||||++||+++|||+|.+
T Consensus 241 ~h~~~K~v~p~~~~~qlE~~i~da~~~~~~~~~~eV~R~rF~PvKn~~dll~~~sd~y~~ 300 (300)
T cd00897 241 IIVNPKTVDGGLNVIQLETAVGAAIKNFDNALGVNVPRSRFLPVKTTSDLLLVRSDLYSL 300 (300)
T ss_pred eeecccccCCCCCEEEeHhHhhhHHHhCCCcEEEEEChhhcCCCCChHHHHhhhhccccC
Confidence 999999996 57899999999999999999999999999999999999999999999853
|
UGPase (UDP-Glucose Pyrophosphorylase) catalyzes the reversible production of UDP-Glucose and pyrophosphate (PPi) from Glucose-1-phosphate and UTP. UDP-glucose plays pivotal roles in galactose utilization, in glycogen synthesis, and in the synthesis of the carbohydrate moieties of glycolipids, glycoproteins, and proteoglycans. UGPase is found in both prokaryotes and eukaryotes. Interestingly, while the prokaryotic and eukaryotic forms of UGPase catalyze the same reaction, they share low sequence similarity. This family consists of mainly eukaryotic UTP-glucose-1-phosphate uridylyltransferases. |
| >PLN02435 probable UDP-N-acetylglucosamine pyrophosphorylase | Back alignment and domain information |
|---|
Probab=100.00 E-value=5e-76 Score=615.69 Aligned_cols=385 Identities=19% Similarity=0.208 Sum_probs=332.0
Q ss_pred HHHHHHHHHhhhhcccChhHHHHHHHHHHHHhhcCCCCccCCccccCCCCccccCCCCCC--CCCChhhHHHhc--ccee
Q 012172 6 EKLTQLKSAVAGLNQISENEKNGFINLVARYLSGEAQHVEWSKIQTPTDKIVVPCDSLAP--VPEDPAETKKLL--DKLV 81 (469)
Q Consensus 6 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~--~~~~~~~g~~~l--~k~a 81 (469)
++.++|.++|..+ +...+.+++++.+..+ .++|+.++|+++....++++... ...+++.|+++| +++|
T Consensus 47 ~e~~~L~~qL~~i------D~~~l~~~~~~~~~~~--~~~~~~i~P~p~~~~~~~~~~~~~~~~~~~~~Gl~~I~~gkva 118 (493)
T PLN02435 47 EERDLLVRDIESL------DLPRIDRIIRCSLRSQ--GLPVPAIEPVPENSVSTVEERTPEDRERWWKMGLKAISEGKLA 118 (493)
T ss_pred HHHHHHHHHHHhc------CHHHHHHHHHHHhhcc--CCchhccCCCChhhccchhccChHHHHHHHHHHHHHHhcCCEE
Confidence 4456666666432 3444667777777432 46899999988776666655431 123456799999 6999
Q ss_pred EEEEcCCCCCcCCCCCCcccc--ccCCCCchHHHHHHHHHHhhh----------hcCCcccEEEecCCCChHHHHHHHHH
Q 012172 82 VLKLNGGLGTTMGCTGPKSVI--EVRNGLTFLDLIVIQIENLNA----------KYGCNVPLLLMNSFNTHDDTSKIIEK 149 (469)
Q Consensus 82 vviLAGG~GTRmg~~~PK~l~--~v~~gks~L~~~~~~i~~l~~----------~~~~~iplviMtS~~t~e~t~~~~~~ 149 (469)
||+||||||||||+++||+|+ ++++++||||++++++++++. .+++.|||+||||+.||++|++||++
T Consensus 119 vvlLAGGqGTRLG~~~PKg~~~Iglps~kslfql~~e~I~~lq~la~~~~~~~~~~~~~IPl~IMTS~~T~~~T~~ff~~ 198 (493)
T PLN02435 119 VVLLSGGQGTRLGSSDPKGCFNIGLPSGKSLFQLQAERILCVQRLAAQASSEGPGRPVTIHWYIMTSPFTDEATRKFFES 198 (493)
T ss_pred EEEeCCCcccccCCCCCccceecCCCCCCcHHHHHHHHHHHHHHHHHhhcccccCCCCceeEEEeCCcchhHHHHHHHHh
Confidence 999999999999999999998 568999999999999999875 24688999999999999999999998
Q ss_pred h--cC-CCCceEEEEecCcceecCCCCcccCCCCCCCCcccccCCCcccchhccccchHHHHHHcCCcEEEEEeCcc-cc
Q 012172 150 Y--SK-SNVEIHTFNQSQYPRLCADDFVPLPCKGKTDKDGWYPPGHGDVFPSLMNSGKLDALISQGKEYVFAANSDN-LG 225 (469)
Q Consensus 150 ~--~g-~~~~i~~f~Q~~~P~l~~~~~~~~~~~~~~~~~~~~P~GhGd~~~~L~~sg~L~~l~~~G~~~v~v~n~DN-L~ 225 (469)
| +| .+.+|+||+|+++||++.+|+++++++ ++++|+|+||||+|.+|.+||+|++|+++|++|++|+|+|| |+
T Consensus 199 ~~~FGl~~~~V~fF~Q~~~P~~~~dg~i~l~~~---~~i~~~P~GnGgiy~aL~~sG~Ld~l~~~Gi~yi~v~~vDN~L~ 275 (493)
T PLN02435 199 HKYFGLEADQVTFFQQGTLPCVSKDGKFIMETP---FKVAKAPDGNGGVYAALKSSRLLEDMASRGIKYVDCYGVDNALV 275 (493)
T ss_pred CCCCCCCccceEEEecCCcceECCCCCcccCCC---cccccCCCCCcHHHHHHHHCCcHHHHHhcCCEEEEEEecccccc
Confidence 4 56 567899999999999999999999865 78999999999999999999999999999999999999999 99
Q ss_pred ccccHHHHHHHHHcCCcceEEEeeeccCCCcceEEEE--eCCeeEEEEeccCChhhhhhc---cccccccEEEEEeEEEe
Q 012172 226 AIVDLKILNHLIQNKNEYCMEVTPKTLADVKGGTLIS--YEGKVQLLEIAQVPDEHVNEF---KSIEKFKIFNTNNLWVN 300 (469)
Q Consensus 226 ~~~dp~~Lg~~~~~~~~~~~~v~~k~~~~~~~G~iv~--~~g~~~ivEy~~~~~e~~~~~---~~~~~~~~~Nt~~~~~~ 300 (469)
+++||.||||++.++++++++|++|+.+++++|++|+ .+|++++|||+|++++..+.. ++...|..+|+++|+|+
T Consensus 276 ~~~DP~flG~~~~~~~d~~~kVv~K~~~~EkvG~i~~~~~~g~~~vvEYsEl~~~~~~~~~~~~g~L~~~~gnI~~h~fs 355 (493)
T PLN02435 276 RVADPTFLGYFIDKGVASAAKVVRKAYPQEKVGVFVRRGKGGPLTVVEYSELDQAMASAINQQTGRLRYCWSNVCLHMFT 355 (493)
T ss_pred cccCHHHHHHHHhcCCceEEEeeecCCCCCceeEEEEecCCCCEEEEEeccCCHHHHhccCccccccccchhhHHHhhcc
Confidence 9999999999999999999999999999999999998 589999999999998875543 35678999999999999
Q ss_pred HHHHHHHHHhcccccccccCCCcCC----CcceehhHHHhhhHhhhcccceeEeecCc-cccccCCchh-----HHHHHH
Q 012172 301 LKAIKRLVEADALKMEIIPNPKEVD----GIKVLQLETAAGAAIRFFDHAIGCNVHRS-RFLPVKATSD-----LLLVQS 370 (469)
Q Consensus 301 l~~L~~~l~~~~~~lp~~~n~K~~~----g~~~iqle~~~~d~~~~~~~~~~v~v~r~-eF~pVKn~~d-----L~~~~~ 370 (469)
+++|+++.+.....||||++.|+++ .+++||||+|+||+|++++++.+++|+|+ ||+||||+.+ ..+|+.
T Consensus 356 ~~fL~~~~~~~~~~l~~H~A~Kkip~~~~~~ngiK~E~FiFDvf~~a~~~~~~eV~R~~EFaPlKN~~g~~~Dsp~tar~ 435 (493)
T PLN02435 356 LDFLNQVANGLEKDSIYHLAEKKIPSIHGYTMGLKLEQFIFDAFPYAPSTALFEVLREEEFAPVKNANGSNFDTPESARL 435 (493)
T ss_pred HHHHHHHHHhhhhcCCceeeccccCccCCCcceEEeeeeeecchhhcCceEEEEEchhhccCcccCCCCCCCCCHHHHHH
Confidence 9999999865555699999999987 35799999999999999999999999997 9999999854 799999
Q ss_pred HHHHhhcCceeecCCccCCCC----CeEEECCCcc
Q 012172 371 DLYTLADGFVTRNEARKNPAN----PTIELGPEFK 401 (469)
Q Consensus 371 ~~~~l~~g~l~~~~~r~~~~~----p~V~l~~~~~ 401 (469)
++..++..|+..+|..+.+.. ..|+++|.++
T Consensus 436 ~l~~~~~~wl~~aG~~~~~~~~~~~~~vEisP~~s 470 (493)
T PLN02435 436 LVLRLHTRWVVAAGGFLTHSVPLYATGVEVSPLCS 470 (493)
T ss_pred HHHHHHHHHHHHcCCEecCCccccCCcEEeCCcee
Confidence 999999999999987553222 2688998865
|
|
| >COG4284 UDP-glucose pyrophosphorylase [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.5e-74 Score=588.38 Aligned_cols=435 Identities=41% Similarity=0.643 Sum_probs=384.9
Q ss_pred HHHHHHHHHHhh-hhcccChh--HHHHHHHHHHHHhhcC--CCCccCCccccCCCCccccCCCCCCCCCChhhHHHhccc
Q 012172 5 AEKLTQLKSAVA-GLNQISEN--EKNGFINLVARYLSGE--AQHVEWSKIQTPTDKIVVPCDSLAPVPEDPAETKKLLDK 79 (469)
Q Consensus 5 ~~~~~~~~~~~~-~~~~~~~~--~~~~~~~~~~~~~~~~--~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~g~~~l~k 79 (469)
+.+|+++.+..+ ..++.++. .++.|..+|++|+.+. +..++|+.++|+.++.++.|++... +.+..+...++|
T Consensus 28 ~h~l~~l~~~s~~~~~~~~~~~~~~d~~f~l~~~~ll~~s~~s~~~~~ki~~~~~d~~~~~~~~~~--~~~~l~~~~~~k 105 (472)
T COG4284 28 EHLLDKLKQSSEKQALKSFEKLLLLDIFFFLFSRYLLNTSKASTQEWDKIRPPNPDDVVDYEKKIL--EGWGLLKIKLGK 105 (472)
T ss_pred HHHHHHhhhhchHHHHhhhhhhhhhHHHHHHHHHHHhhcCcccceeecccCCCChhhhccchhhcc--chhhhhhhhcCc
Confidence 667777777665 45566666 8999999999999974 3599999999999998888887753 222223345889
Q ss_pred eeEEEEcCCCCCcCCCCCCccccccCCCCchHHHHHHHHHHhhhhcCCcccEEEecCCCChHHHHHHHHH--hcC-CCCc
Q 012172 80 LVVLKLNGGLGTTMGCTGPKSVIEVRNGLTFLDLIVIQIENLNAKYGCNVPLLLMNSFNTHDDTSKIIEK--YSK-SNVE 156 (469)
Q Consensus 80 ~avviLAGG~GTRmg~~~PK~l~~v~~gks~L~~~~~~i~~l~~~~~~~iplviMtS~~t~e~t~~~~~~--~~g-~~~~ 156 (469)
+|||+||||||||||+++||++++|+.|+||||++++|++.++++|+++|||+||||. |+++|..+|+. |++ ++.+
T Consensus 106 lAvl~LaGGqGtrlG~~gPKgl~~V~~gks~~dl~~~qIk~ln~~~~~~vP~~iMtS~-nt~~t~s~f~~~~Y~~~~k~~ 184 (472)
T COG4284 106 LAVLKLAGGQGTRLGCDGPKGLFEVKDGKSLFDLQAEQIKYLNRQYNVDVPLYIMTSL-NTEETDSYFKSNDYFGLDKED 184 (472)
T ss_pred eEEEEecCCcccccccCCCceeEEecCCCcHHHHHHHHHHHHHHHhCCCCCEEEEecC-CcHHHHHHHhhhhhcCCCHHH
Confidence 9999999999999999999999999889999999999999999999999999999995 88999999986 556 4778
Q ss_pred eEEEEecCcceecCCCCcccCCCCCCCCcccccCCCcccchhccccchHHHHHHcCCcEEEEEeCccccccccHHHHHHH
Q 012172 157 IHTFNQSQYPRLCADDFVPLPCKGKTDKDGWYPPGHGDVFPSLMNSGKLDALISQGKEYVFAANSDNLGAIVDLKILNHL 236 (469)
Q Consensus 157 i~~f~Q~~~P~l~~~~~~~~~~~~~~~~~~~~P~GhGd~~~~L~~sg~L~~l~~~G~~~v~v~n~DNL~~~~dp~~Lg~~ 236 (469)
|.||.|+.+||+..++..++.+..+++ ++|+|+||||+|.+|..||++++|.++|++|++|+|+|||++++||.+||++
T Consensus 185 I~fF~Q~~~P~~~~~sg~~~~~~~~~~-~~~~P~GnG~lf~aL~~SG~le~l~~~G~e~lfV~nIDNL~~~vD~~~lg~~ 263 (472)
T COG4284 185 IFFFVQSLFPRLLSDSGLPFLESDDSN-LAWYPPGNGDLFKALKSSGILEKLIAQGIEYLFVSNIDNLGATVDLKFLGFM 263 (472)
T ss_pred eEEEecCCcceeecccCccccccCCcc-cccCCCCCccHHHHHHhcchHHHHHhcCceEEEEecccccccccCHHHHHHH
Confidence 999999999977776666666654333 9999999999999999999999999999999999999999999999999999
Q ss_pred HHcCCcceEEEeeeccCCCcceEEEEeCCeeEEEEeccCChhhhhhccccccccEEEEEeEEEeHHHHHHHHHhcccccc
Q 012172 237 IQNKNEYCMEVTPKTLADVKGGTLISYEGKVQLLEIAQVPDEHVNEFKSIEKFKIFNTNNLWVNLKAIKRLVEADALKME 316 (469)
Q Consensus 237 ~~~~~~~~~~v~~k~~~~~~~G~iv~~~g~~~ivEy~~~~~e~~~~~~~~~~~~~~Nt~~~~~~l~~L~~~l~~~~~~lp 316 (469)
+.++++++||++.|+++++++|+++.++|+++++||+|+|++++++|++...++++|+||+|+++..++.+.+.....||
T Consensus 264 ~~~~~e~~~e~t~Kt~a~ekvG~Lv~~~g~~rllEysev~~~~~~~~~s~~~~~~~n~Nni~l~~~~~~~l~~~~~l~Lp 343 (472)
T COG4284 264 AETNYEYLMETTDKTKADEKVGILVTYDGKLRLLEYSEVPNEHREEFTSDGKLKYFNTNNIWLHLFSVKFLKEAAYLNLP 343 (472)
T ss_pred HhcCcceeEEEeecccccccceEEEEeCCceEEEEEecCChhHhhhhccccceeeeccccceeehhHHHHHHhhhccCCc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999998889999
Q ss_pred cccCCCcCCCc-ceehhHHHhhhHhhhcccceeEeecCccccccCCchhHHHHHHHHHHhhcCceeecCCccCCCCCeEE
Q 012172 317 IIPNPKEVDGI-KVLQLETAAGAAIRFFDHAIGCNVHRSRFLPVKATSDLLLVQSDLYTLADGFVTRNEARKNPANPTIE 395 (469)
Q Consensus 317 ~~~n~K~~~g~-~~iqle~~~~d~~~~~~~~~~v~v~r~eF~pVKn~~dL~~~~~~~~~l~~g~l~~~~~r~~~~~p~V~ 395 (469)
+|.|.|+++.. .++|++++++.++..|++ ||.| .||+...++ +++.+...| |.....|.+.
T Consensus 344 i~~a~Kki~~~~~~~~~~t~i~~~i~kfe~---------~FI~----fDlF~~~s~----~~~~~~~vp-R~~~f~Plkn 405 (472)
T COG4284 344 IHKAIKKIPQLDNIIQLTTAIGKNISKFEN---------EFIP----FDLFLYKSD----ENGGLLLVP-RFGEFSPLKN 405 (472)
T ss_pred chhhhcccCccccceeeccccccchhhccc---------cccc----eeeeEEEec----CCCceEecc-ccCCCCchhh
Confidence 99999999743 589999999987777754 2777 777777666 778888999 8766789999
Q ss_pred E-CCCcccccccccccccCCcccccCceEEEeeEEECCCcEEeeeEEEEecCCCceeeCCCCeeecceecCC
Q 012172 396 L-GPEFKKVGNFLSRFKSIPSIIELDSLKVTGDVWFGANITLKGKVTIAAKSGEKLEIPDGAVLENKEINGP 466 (469)
Q Consensus 396 l-~~~~~~~~~~~~~i~~~p~~~~~~~l~v~G~v~fg~~V~i~g~~~I~~~~~~~~~I~~~s~le~~~v~~~ 466 (469)
+ +..|.+++++..++..+|.+++..+++|.|+|.||++|.+. .+++...++||.++++|+++|.++
T Consensus 406 ~~~~~~~~~~~~~~~~~~~~~~~e~~~~~is~nv~~~~~~~lk-----~~~e~~~l~~~~~s~~e~~ii~~~ 472 (472)
T COG4284 406 LEGSHFDNVETFTCGIPRIPLILELEGLTISGNVLFGRNVTLK-----YASENTSLCIPNKSFLENVIITGN 472 (472)
T ss_pred ccCCCCCcHHhhhcccccccchhhhccceecCceEeeecceee-----ecCCCceEeccCCeeeeeeeEecC
Confidence 9 44588999999999999999999999999999999999998 567777788999999999999775
|
|
| >PTZ00339 UDP-N-acetylglucosamine pyrophosphorylase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.6e-69 Score=564.21 Aligned_cols=389 Identities=19% Similarity=0.246 Sum_probs=319.2
Q ss_pred HHHHHHHHHh-hhhcccChhHHHHHHHHHHHHhhc---CC------CCccCCccccCCCCccccCCCCC-CCCCChhhHH
Q 012172 6 EKLTQLKSAV-AGLNQISENEKNGFINLVARYLSG---EA------QHVEWSKIQTPTDKIVVPCDSLA-PVPEDPAETK 74 (469)
Q Consensus 6 ~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~---~~------~~~~~~~~~p~~~~~~~~~~~~~-~~~~~~~~g~ 74 (469)
++..+|..++ ..+.. .+.+.+.+++++.... .. ..+.-+.++|++++...+..+.+ ....+++.|+
T Consensus 23 ~e~~~l~~ql~~~~~~---~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~Gl 99 (482)
T PTZ00339 23 GEFTPLATQILSSLTN---VDFKHRNAVLEPKLEEYNAEAPVGIDIDSIHNCNIEPPNNNTFIDIYEKEKERKELKESGL 99 (482)
T ss_pred HHHHHHHHHHHHHhhc---cCHHHHHHHHHHHhhhhhcccccccccccccccccCCCCcccccccccCHHHHHHHHHhHH
Confidence 4445566655 43332 3445556666655532 11 11234668998875443332211 1123556799
Q ss_pred Hhcc--ceeEEEEcCCCCCcCCCCCCccccccC--CCCchHHHHHHHHHHhhhhc--------CCcccEEEecCCCChHH
Q 012172 75 KLLD--KLVVLKLNGGLGTTMGCTGPKSVIEVR--NGLTFLDLIVIQIENLNAKY--------GCNVPLLLMNSFNTHDD 142 (469)
Q Consensus 75 ~~l~--k~avviLAGG~GTRmg~~~PK~l~~v~--~gks~L~~~~~~i~~l~~~~--------~~~iplviMtS~~t~e~ 142 (469)
++|+ |+++|+||||+|||||++.||+|++|. +|+||||++++++++++..+ ++.+||+||||++|++.
T Consensus 100 ~~i~~gkvavViLAGG~GTRLg~~~PK~ll~I~~~~gksL~q~~~erI~~l~~~~~~~~~~~~~~~Ip~~IMTS~~t~~~ 179 (482)
T PTZ00339 100 EIIKKGEVAVLILAGGLGTRLGSDKPKGLLECTPVKKKTLFQFHCEKVRRLEEMAVAVSGGGDDPTIYILVLTSSFNHDQ 179 (482)
T ss_pred HHHhcCCeEEEEECCCCcCcCCCCCCCeEeeecCCCCccHHHHHHHHHHHHhhhhhcccccccCCCCCEEEEeCcchHHH
Confidence 9996 699999999999999999999999984 79999999999999997644 46799999999999999
Q ss_pred HHHHHHHh--cC-CCCceEEEEecCcceecCC-CCcccCCCCCCCCcccccCCCcccchhccccchHHHHHHcCCcEEEE
Q 012172 143 TSKIIEKY--SK-SNVEIHTFNQSQYPRLCAD-DFVPLPCKGKTDKDGWYPPGHGDVFPSLMNSGKLDALISQGKEYVFA 218 (469)
Q Consensus 143 t~~~~~~~--~g-~~~~i~~f~Q~~~P~l~~~-~~~~~~~~~~~~~~~~~P~GhGd~~~~L~~sg~L~~l~~~G~~~v~v 218 (469)
|++||++| +| .+.+|++|.|+++||++.+ |++++.++ ++++|+|+||||+|.+|.++|+|++|.++|++|++|
T Consensus 180 t~~~f~~~~~FGl~~~~V~~F~Q~~~P~i~~~~g~ill~~~---~~i~~~P~GnGgiy~aL~~sG~Ld~l~~~Gi~yi~v 256 (482)
T PTZ00339 180 TRQFLEENNFFGLDKEQVIFFKQSSLPCYDENTGRFIMSSQ---GSLCTAPGGNGDVFKALAKCSELMDIVRKGIKYVQV 256 (482)
T ss_pred HHHHHHhccccCCCcccEEEEecCCcceEecCCCCcccCCC---CceeeCCCCCcHHHHHHHHCCcHHHHHHcCCEEEEE
Confidence 99999984 46 4678999999999999865 77777655 789999999999999999999999999999999999
Q ss_pred EeCcc-ccccccHHHHHHHHHcCC-cceEEEeeeccCCCcceEEEEeCCeeEEEEeccCChhhhh---hccccccccEEE
Q 012172 219 ANSDN-LGAIVDLKILNHLIQNKN-EYCMEVTPKTLADVKGGTLISYEGKVQLLEIAQVPDEHVN---EFKSIEKFKIFN 293 (469)
Q Consensus 219 ~n~DN-L~~~~dp~~Lg~~~~~~~-~~~~~v~~k~~~~~~~G~iv~~~g~~~ivEy~~~~~e~~~---~~~~~~~~~~~N 293 (469)
+|+|| |++++||.||||++++++ +++.+|+ |+.+++++|++|+.+|++.+|||+|++++..+ .+++...|..+|
T Consensus 257 ~~vDN~L~k~~DP~flG~~~~~~~~~~~~kvv-k~~~~EkvG~~~~~~g~~~vvEYsEi~~~~~~~~~~~~g~l~f~~gn 335 (482)
T PTZ00339 257 ISIDNILAKVLDPEFIGLASSFPAHDVLNKCV-KREDDESVGVFCLKDYEWQVVEYTEINERILNNDELLTGELAFNYGN 335 (482)
T ss_pred EecCcccccccCHHHhHHHHHCCchhheeeee-cCCCCCceeEEEEeCCcccEEEEeccChhhhhcccccCCeecccccc
Confidence 99999 899999999999999999 7777777 88999999999999999999999999876543 334677889999
Q ss_pred EEeEEEeHHHHHHHHHh-cccccccccCCCcCC-------CcceehhHHHhhhHhhhcccceeEeecCc-cccccCCchh
Q 012172 294 TNNLWVNLKAIKRLVEA-DALKMEIIPNPKEVD-------GIKVLQLETAAGAAIRFFDHAIGCNVHRS-RFLPVKATSD 364 (469)
Q Consensus 294 t~~~~~~l~~L~~~l~~-~~~~lp~~~n~K~~~-------g~~~iqle~~~~d~~~~~~~~~~v~v~r~-eF~pVKn~~d 364 (469)
+|+|||++++|++++++ ....||+|++.|+++ .+++||||+|+||+|++.+++.+++|+|+ ||+||||+.+
T Consensus 336 I~~h~fsl~fl~~~~~~~~~~~l~~H~a~Kkip~~~~~~~~png~K~E~FiFDvf~~~~~~~~~ev~R~~eFsPlKNa~g 415 (482)
T PTZ00339 336 ICSHIFSLDFLKKVAANRLYESTPYHAARKKIPYINGPTDKTMGIKLEAFIFDIFRYAKNVLILEVDREDEFAPIKNADG 415 (482)
T ss_pred eEEEEEEHHHHHHHhhhhhhhcCCceeeccccCeeCCCCCCcceeeehhhhhhHHHhccccceeeechhhccccccCCCC
Confidence 99999999999998863 334699999999997 24799999999999999999999999997 9999999866
Q ss_pred -----HHHHHHHHHHhhcCceeecCCccCCC----CCeEEECCCcc
Q 012172 365 -----LLLVQSDLYTLADGFVTRNEARKNPA----NPTIELGPEFK 401 (469)
Q Consensus 365 -----L~~~~~~~~~l~~g~l~~~~~r~~~~----~p~V~l~~~~~ 401 (469)
..+|++++..++..|+..++..+.+. .-.|+++|.+.
T Consensus 416 ~~~d~p~tar~~l~~~~~~wl~~ag~~~~~~~~~~~~~~Eisp~~s 461 (482)
T PTZ00339 416 AAADTILNAQKLLLSLHTRWLEAALETVAGNPREGLNLCEISPLVS 461 (482)
T ss_pred CCCCCHHHHHHHHHHHHHHHHHHCCCeeeccccCCCceEEecCcce
Confidence 89999999999999999999865431 23578888755
|
|
| >cd04193 UDPGlcNAc_PPase UDPGlcNAc pyrophosphorylase catalayzes the synthesis of UDPGlcNAc | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.9e-68 Score=539.24 Aligned_cols=293 Identities=24% Similarity=0.360 Sum_probs=268.8
Q ss_pred CChhhHHHhcc--ceeEEEEcCCCCCcCCCCCCcccccc--CCCCchHHHHHHHHHHhhhhcC------CcccEEEecCC
Q 012172 68 EDPAETKKLLD--KLVVLKLNGGLGTTMGCTGPKSVIEV--RNGLTFLDLIVIQIENLNAKYG------CNVPLLLMNSF 137 (469)
Q Consensus 68 ~~~~~g~~~l~--k~avviLAGG~GTRmg~~~PK~l~~v--~~gks~L~~~~~~i~~l~~~~~------~~iplviMtS~ 137 (469)
++++.|+++|+ ++|+|+||||+|||||++.||+|+|| ++|+||||++++++++++..++ +.+||+||||+
T Consensus 2 ~~~~~G~~~i~~~~va~viLaGG~GTRLg~~~PK~l~pv~~~~~k~ll~~~~e~l~~l~~~~~~~~~~~~~ip~~imtS~ 81 (323)
T cd04193 2 EWEEAGLKAIAEGKVAVLLLAGGQGTRLGFDGPKGMFPVGLPSKKSLFQLQAERILKLQELAGEASGKKVPIPWYIMTSE 81 (323)
T ss_pred hHHHHhHHHHhcCCEEEEEECCCcccccCCCCCeEEEEecCCCCCcHHHHHHHHHHHHHHHHhhccCCCCCceEEEEcCh
Confidence 35678999997 99999999999999999999999998 4699999999999999987776 78999999999
Q ss_pred CChHHHHHHHHH--hcC-CCCceEEEEecCcceecCCCCcccCCCCCCCCcccccCCCcccchhccccchHHHHHHcCCc
Q 012172 138 NTHDDTSKIIEK--YSK-SNVEIHTFNQSQYPRLCADDFVPLPCKGKTDKDGWYPPGHGDVFPSLMNSGKLDALISQGKE 214 (469)
Q Consensus 138 ~t~e~t~~~~~~--~~g-~~~~i~~f~Q~~~P~l~~~~~~~~~~~~~~~~~~~~P~GhGd~~~~L~~sg~L~~l~~~G~~ 214 (469)
+||++|++||++ |+| .+++|++|.|+++||++.+|+++++.+ ++++|+|+||||+|.+|.+||+|++|+++|++
T Consensus 82 ~t~~~t~~~~~~~~~fGl~~~~i~~f~Q~~~P~~~~~g~~~l~~~---~~~~~~P~GhG~i~~aL~~sG~l~~l~~~G~~ 158 (323)
T cd04193 82 ATHEETRKFFKENNYFGLDPEQVHFFQQGMLPCVDFDGKILLEEK---GKIAMAPNGNGGLYKALQTAGILEDMKKRGIK 158 (323)
T ss_pred hHhHHHHHHHHhCCcCCCCCceEEEEecCceeeEcCCCccccCCC---CccccCCCCchHHHHHHHHCChHHHHHhCCCE
Confidence 999999999998 446 467899999999999999999998865 78999999999999999999999999999999
Q ss_pred EEEEEeCcc-ccccccHHHHHHHHHcCCcceEEEeeeccCCCcceEEEEeCCeeEEEEeccCChhhhhhcccccc--ccE
Q 012172 215 YVFAANSDN-LGAIVDLKILNHLIQNKNEYCMEVTPKTLADVKGGTLISYEGKVQLLEIAQVPDEHVNEFKSIEK--FKI 291 (469)
Q Consensus 215 ~v~v~n~DN-L~~~~dp~~Lg~~~~~~~~~~~~v~~k~~~~~~~G~iv~~~g~~~ivEy~~~~~e~~~~~~~~~~--~~~ 291 (469)
|++|+|+|| |++++||.+|||+++++++++++|++|+.+++++|++|+.+|+++++||+|+|++..+.+++... |..
T Consensus 159 yi~v~~vDN~L~~~~Dp~~lG~~~~~~~~~~~kvv~k~~~~ekvG~l~~~~g~~~vvEysel~~~~~~~~~~~g~l~f~~ 238 (323)
T cd04193 159 YIHVYSVDNILVKVADPVFIGFCISKGADVGAKVVRKRYPTEKVGVVVLVDGKPQVVEYSEISDELAEKRDADGELQYNA 238 (323)
T ss_pred EEEEEecCcccccccCHHHhHHHHHcCCceEEEEEECCCCCCceeEEEEECCeEEEEEeecCCHHHHhccCcCCcEeccc
Confidence 999999999 99999999999999999999999999999999999999999999999999999999888765444 444
Q ss_pred EEEEeEEEeHHHHHHHHHhcccccccccCCCcCC------------CcceehhHHHhhhHhhhcccceeEeecCc-cccc
Q 012172 292 FNTNNLWVNLKAIKRLVEADALKMEIIPNPKEVD------------GIKVLQLETAAGAAIRFFDHAIGCNVHRS-RFLP 358 (469)
Q Consensus 292 ~Nt~~~~~~l~~L~~~l~~~~~~lp~~~n~K~~~------------g~~~iqle~~~~d~~~~~~~~~~v~v~r~-eF~p 358 (469)
.|+++++|++++|+++++.....||+|+|.|+++ +++++|||+|+||+|++++++.+++|+|+ ||+|
T Consensus 239 ~ni~~~~fsl~fl~~~~~~~~~~l~~h~a~Kki~~~d~~~~~~~p~~~n~~klE~fifd~~~~~~~~~~~eV~R~~~F~P 318 (323)
T cd04193 239 GNIANHFFSLDFLEKAAEMEEPSLPYHIAKKKIPYVDLEGGLVKPDEPNGIKLELFIFDVFPFAKNFVCLEVDREEEFSP 318 (323)
T ss_pred chHhhheeCHHHHHHHHhhccccCCceEeccccCcccCcCcEeccCCCcEEEeHHHHHHHHHhCCceEEEEEChhhcccc
Confidence 4666677999999999987666899999999973 35799999999999999999999999998 8999
Q ss_pred cCCch
Q 012172 359 VKATS 363 (469)
Q Consensus 359 VKn~~ 363 (469)
|||+.
T Consensus 319 vKn~~ 323 (323)
T cd04193 319 LKNAD 323 (323)
T ss_pred CcCCC
Confidence 99974
|
UDP-N-acetylglucosamine (UDPGlcNAc) pyrophosphorylase (UAP) (also named GlcNAc1P uridyltransferase), catalyzes the reversible conversion of UTP and GlcNAc1 to PPi and UDPGlcNAc. UDP-N-acetylglucosamine (UDPGlcNAc), the activated form of GlcNAc, is a key precursor of N- and O-linked glycosylations. It is essential for the synthesis of chitin (a major component of the fungal cell wall) and of the glycosylphosphatidylinositol (GPI) linker which anchors a variety of cell surface proteins to the plasma membrane. In bacteria, UDPGlcNAc represents an essential precursor for both peptidoglycan and lipopolysaccharide biosynthesis. Human UAP has two isoforms, resulting from alternative splicing of a single gene and differing by the presence or absence of 17 amino acids. UDPGlcNAc pyrophosphorylase shares significant sequence and structure conservation with UDPglucose pyrophosphorylase. |
| >cd06424 UGGPase UGGPase catalyzes the synthesis of UDP-Glucose/UDP-Galactose | Back alignment and domain information |
|---|
Probab=100.00 E-value=7.1e-64 Score=499.82 Aligned_cols=281 Identities=24% Similarity=0.232 Sum_probs=247.9
Q ss_pred eeEEEEcCCCCCcCCCCCCcccccc--CCCCchHHHHHHHHHHhhh----hcCCcccEEEecCCCChHHHHHHHHHh--c
Q 012172 80 LVVLKLNGGLGTTMGCTGPKSVIEV--RNGLTFLDLIVIQIENLNA----KYGCNVPLLLMNSFNTHDDTSKIIEKY--S 151 (469)
Q Consensus 80 ~avviLAGG~GTRmg~~~PK~l~~v--~~gks~L~~~~~~i~~l~~----~~~~~iplviMtS~~t~e~t~~~~~~~--~ 151 (469)
+|+|+||||||||||+++||++++| ++|+||||++++||+++++ .+++.|||+||||+.||++|++||++| +
T Consensus 1 ~a~vllaGG~GTRLG~~~pKg~~~v~~~~~~s~f~l~~~~i~~l~~~~~~~~~~~IPl~IMTS~~Th~~T~~~fe~n~yF 80 (315)
T cd06424 1 AVFVLVAGGLGERLGYSGIKIGLPVELTTNTTYLQYYLNYIRAFQEASKKGEKMEIPFVIMTSDDTHSKTLKLLEENNYF 80 (315)
T ss_pred CEEEEecCCCccccCCCCCceeeeccCCCCCcHHHHHHHHHHHHHHHhhccCCCceeEEEECCCchhHHHHHHHHHCCcc
Confidence 5899999999999999999999987 7999999999999999997 678899999999999999999999984 4
Q ss_pred C-CCCceEEEEecCcceec-CCCCcccCCCCCCCCcccccCCCcccchhccccchHHHHHHcCCcEEEEEeCcc-ccccc
Q 012172 152 K-SNVEIHTFNQSQYPRLC-ADDFVPLPCKGKTDKDGWYPPGHGDVFPSLMNSGKLDALISQGKEYVFAANSDN-LGAIV 228 (469)
Q Consensus 152 g-~~~~i~~f~Q~~~P~l~-~~~~~~~~~~~~~~~~~~~P~GhGd~~~~L~~sg~L~~l~~~G~~~v~v~n~DN-L~~~~ 228 (469)
| .+++|++|+|+++||++ .+|++++. ..++++++|+|+||||+|.+|+++|+|++|+++|++|++|+|+|| |++.+
T Consensus 81 Gl~~~~V~fF~Q~~~P~l~~~~g~l~~~-l~~~~~i~~~P~GhGdiy~aL~~sGlLd~l~~~Gikyi~v~~vdN~L~~~a 159 (315)
T cd06424 81 GLEKDQVHILKQEKVFCLIDNDAHLALD-PDNTYSILTKPHGHGDVHTLLYNSGLLKKWIEAGYKWLVFFQDTNALAFKA 159 (315)
T ss_pred CCCcccEEEEecCceEEEecCCCCcccc-cCCCCccccCCCCchHHHHHHHHCCcHHHHHHCCCEEEEEEecchhhhhcc
Confidence 6 56789999999999997 78887531 122488999999999999999999999999999999999999999 99999
Q ss_pred cHHHHHHHHHcCCcceEEEeeeccCCCcceEEEE---eCCeeEE--EEeccCChhhhhhccc------ccccc--EEEEE
Q 012172 229 DLKILNHLIQNKNEYCMEVTPKTLADVKGGTLIS---YEGKVQL--LEIAQVPDEHVNEFKS------IEKFK--IFNTN 295 (469)
Q Consensus 229 dp~~Lg~~~~~~~~~~~~v~~k~~~~~~~G~iv~---~~g~~~i--vEy~~~~~e~~~~~~~------~~~~~--~~Nt~ 295 (469)
||.++|+++.++++++.+|++ +.+.|++|++|+ .||+.++ |||+|++++..+...+ ...++ ..|||
T Consensus 160 dP~fiG~~~~~~~d~~~k~v~-~~~~E~vG~~~~~~~~~g~~~v~nvEYsel~~~~~~~~~~~g~~~~~~~~s~f~gNi~ 238 (315)
T cd06424 160 IPAVLGVSATKSLDMNSLTVP-RKPKEAIGALCKLTKNNGKSMTINVEYNQLDPLLRASGKDDGDVDDKTGFSPFPGNIN 238 (315)
T ss_pred ChhhEEEEecCCCceEeEEEe-CCCCCceeeEEEEecCCCceEEEEEEeecCCHHHHhcCCCCCCcccccccccCCCeee
Confidence 999999999999999999998 477899999997 5688877 9999999876553311 22233 55999
Q ss_pred eEEEeHHHHHHHHHhcccccccccCCCcCCCcc-----eehhHHHhhhHhhh---cccceeEeecCc-cccccCCc
Q 012172 296 NLWVNLKAIKRLVEADALKMEIIPNPKEVDGIK-----VLQLETAAGAAIRF---FDHAIGCNVHRS-RFLPVKAT 362 (469)
Q Consensus 296 ~~~~~l~~L~~~l~~~~~~lp~~~n~K~~~g~~-----~iqle~~~~d~~~~---~~~~~~v~v~r~-eF~pVKn~ 362 (469)
+|+|++++|.+.++++...+|+|+|.|+.++.. -.+||++|+|+... ..++.+++|+|+ +|+||||.
T Consensus 239 ~~~f~l~~~~~~l~~~~~~~~~~~n~ky~d~~~~~~~~p~rlE~~m~D~~~~f~~~~~~~~~~~~r~~~fsP~KN~ 314 (315)
T cd06424 239 QLVFSLGPYMDELEKTKGAIPEFINPKYKDATKTAFKSPTRLECMMQDIPLLFEEDYRVGFTVLDRWLCFSPVKNN 314 (315)
T ss_pred eEEEeHHHHHHHHhhccccCeeeecCCcccCCCCeecCchHHHHHHHHHHHhhcccceeEEEEEchhhcccccCCC
Confidence 999999999999998888999999999987432 26999999999555 678899999998 89999995
|
UGGPase: UDP-Galactose/Glucose Pyrophosphorylase catalyzes the reversible production of UDP-Glucose/UDP-Galactose and pyrophosphate (PPi) from Glucose-1-phosphate/Galactose-1-phosphate and UTP. Its dual substrate specificity distinguishes it from the single substrate enzyme UDP-glucose pyrophosphorylase. It may play a key role in the galactose metabolism in raffinose oligosaccharide (RFO) metabolizing plants. RFO raffinose is a major photoassimilate and is a galactosylderivative of sucrose (Suc) containing a galactose (Gal) moiety. Upon arriving at the sink tissue, the Gal moieties of the RFOs are initially removed by alpha-galactosidase and then are phosphorylated to Gal-1-P. Gal-1-P is converted to UDP-Gal. The UDP-Gal is further metabolized to UDP-Glc via an epimerase reaction. The UDP-Glc can be directly utilized in cell wall metabolism or in Suc synthesis. However, for the Suc synthesis UDP-Glc must be f |
| >cd04180 UGPase_euk_like Eukaryotic UGPase-like includes UDPase and UDPGlcNAc pyrophosphorylase enzymes | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.9e-59 Score=461.51 Aligned_cols=251 Identities=38% Similarity=0.513 Sum_probs=233.5
Q ss_pred eeEEEEcCCCCCcCCCCCCccccccC--CCCchHHHHHHHHHHhhhhc--CCcccEEEecCCCChHHHHHHHHHhcCCCC
Q 012172 80 LVVLKLNGGLGTTMGCTGPKSVIEVR--NGLTFLDLIVIQIENLNAKY--GCNVPLLLMNSFNTHDDTSKIIEKYSKSNV 155 (469)
Q Consensus 80 ~avviLAGG~GTRmg~~~PK~l~~v~--~gks~L~~~~~~i~~l~~~~--~~~iplviMtS~~t~e~t~~~~~~~~g~~~ 155 (469)
+|+|+||||+|||||++.||+|++|. +|+||||++++++++++..+ +..|||+||||++|++.|++||++|.....
T Consensus 1 va~viLaGG~GtRLg~~~PK~~~~i~~~~gk~~l~~~~~~i~~~~~~~~~~~~Ip~~imts~~t~~~t~~~l~~~~~~~~ 80 (266)
T cd04180 1 VAVVLLAGGLGTRLGKDGPKSSTDVGLPSGQCFLQLIGEKILTLQEIDLYSCKIPEQLMNSKYTHEKTQCYFEKINQKNS 80 (266)
T ss_pred CEEEEECCCCccccCCCCCceeeeecCCCCCcHHHHHHHHHHHHHHHhhcCCCCCEEEEcCchhHHHHHHHHHHcCCCCC
Confidence 58999999999999999999999984 69999999999999998877 788999999999999999999999874456
Q ss_pred ceEEEEecCcceecCCCCcccCCCCCCCCcccccCCCcccchhccccchHHHHHHcCCcEEEEEeCcc-ccccccHHHHH
Q 012172 156 EIHTFNQSQYPRLCADDFVPLPCKGKTDKDGWYPPGHGDVFPSLMNSGKLDALISQGKEYVFAANSDN-LGAIVDLKILN 234 (469)
Q Consensus 156 ~i~~f~Q~~~P~l~~~~~~~~~~~~~~~~~~~~P~GhGd~~~~L~~sg~L~~l~~~G~~~v~v~n~DN-L~~~~dp~~Lg 234 (469)
++++|.|+++|+++.+|...++.+ ++++|+|+||||+|.+|..+|+|++|+++|++|++|+|+|| |+.++||.++|
T Consensus 81 ~v~~f~Q~~~P~~~~~~~~~~~~~---~~~~~~P~GnGdi~~~L~~sglLd~l~~~G~~yi~v~~vDN~la~v~DP~~lG 157 (266)
T cd04180 81 YVITFMQGKLPLKNDDDARDPHNK---TKCHLFPCGHGDVVLALIHSGHLNKLLEKGYRYIHFIGVDNLLVKVADPLFIG 157 (266)
T ss_pred ceEEEEeCCceEEeCCCCcccCCC---CceeeccCCcHHHHHHHHHCChHHHHHHcCCEEEEEEccCccCccccCHHHHH
Confidence 899999999999999998866543 77899999999999999999999999999999999999999 77777999999
Q ss_pred HHHHcCCcceEEEeeeccCCCcceEEEEeC-CeeEEEEeccCChhhhhh--------ccccccccEEEEEeEEEeHHHHH
Q 012172 235 HLIQNKNEYCMEVTPKTLADVKGGTLISYE-GKVQLLEIAQVPDEHVNE--------FKSIEKFKIFNTNNLWVNLKAIK 305 (469)
Q Consensus 235 ~~~~~~~~~~~~v~~k~~~~~~~G~iv~~~-g~~~ivEy~~~~~e~~~~--------~~~~~~~~~~Nt~~~~~~l~~L~ 305 (469)
+++.++++++++|++|+.+++++|+++..+ |+++++||+|+|++..++ +++...|.++|||||||++++|+
T Consensus 158 ~~~~~~~~~~~kvv~K~~~d~k~G~~~~~~~g~~~~vEyse~~~~~~~~~~~~~~~~~~~~~~~~~~n~~~~~~~l~~l~ 237 (266)
T cd04180 158 IAIQNRKAINQKVVPKTRNEESGGYRIANINGRVQLLEYDQIKKLLKQKMVNNQIPKDIDDAPFFLFNTNNLINFLVEFK 237 (266)
T ss_pred HHHHcCCCEEEEEEECCCCCCeEEEEEEecCCCEEEEEeccCCHHHHhccccccCcCCCCceeeccceEEEEEEEHHHHH
Confidence 999999999999999999999999999987 999999999999988765 56677899999999999999999
Q ss_pred HHHHhcccccccccCCCcCCCcceehhHHHhhhHhhhcccceeEeecCc-cccccCC
Q 012172 306 RLVEADALKMEIIPNPKEVDGIKVLQLETAAGAAIRFFDHAIGCNVHRS-RFLPVKA 361 (469)
Q Consensus 306 ~~l~~~~~~lp~~~n~K~~~g~~~iqle~~~~d~~~~~~~~~~v~v~r~-eF~pVKn 361 (469)
++++ |+|++|+++.+++|+|+ ||+||||
T Consensus 238 ~~~~----------------------------d~~~~~~~~~~~~v~r~~~F~PvKn 266 (266)
T cd04180 238 DRVD----------------------------DIIEFTDDIVGVMVHRAEEFAPVKN 266 (266)
T ss_pred HHHH----------------------------HHHhccCceEEEEeCchhccccCCC
Confidence 9874 89999999999999998 9999998
|
This family includes UDP-Glucose Pyrophosphorylase (UDPase) and UDPGlcNAc pyrophosphorylase enzymes. The two enzymes share significant sequence and structure similarity. UDP-Glucose Pyrophosphorylase catalyzes a reversible production of UDP-Glucose and pyrophosphate (PPi) from Glucose-1-phosphate and UTP. UDP-glucose plays pivotal roles in galactose utilization, in glycogen synthesis, and in the synthesis of the carbohydrate moieties of glycolipids , glycoproteins , and proteoglycans . UDP-N-acetylglucosamine (UDPGlcNAc) pyrophosphorylase (UAP) (also named GlcNAc1P uridyltransferase), catalyzes the reversible conversion of UTP and GlcNAc1P from PPi and UDPGlcNAc, which is a key precursor of N- and O-linked glycosylations and is essential for the synthesis of chitin (a major component of the fungal cell wall) and of the glycosylphosphatidylinositol (GPI) linker anchoring a variety o |
| >KOG2388 consensus UDP-N-acetylglucosamine pyrophosphorylase [Cell wall/membrane/envelope biogenesis] | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.3e-58 Score=470.68 Aligned_cols=384 Identities=20% Similarity=0.232 Sum_probs=324.0
Q ss_pred HHHHHHHHHHhhhhcccChhHHHHHHHHHHHHhhcCCCCccCCccccCCCCccccCCCCC--CCCCChhhHHHhcc--ce
Q 012172 5 AEKLTQLKSAVAGLNQISENEKNGFINLVARYLSGEAQHVEWSKIQTPTDKIVVPCDSLA--PVPEDPAETKKLLD--KL 80 (469)
Q Consensus 5 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~--~~~~~~~~g~~~l~--k~ 80 (469)
+++.++|+.+|..++-....++.. ..+.. . . .+-.+++|.++..+.++.... ..+.++..|+++++ ++
T Consensus 27 ~~~~~~l~~~ie~l~l~~~~~~~~--~~a~~----~-~-~~~~~~~p~p~~~~~~~~~~~~~d~d~~~~~G~~~i~~~~~ 98 (477)
T KOG2388|consen 27 EADKESLLDQIEVLNLSRIHGLQR--ISANE----D-S-KPVGEIRPVPESKSWPLKERGLDDVDQWWKEGLRLIAEGKV 98 (477)
T ss_pred HHHHHHHHHHHHhhcccccchhhh--cChhh----c-c-CcccccCCCCccccceecccCchhhhHHHhcChhhhhcCcc
Confidence 344456777776666555544433 11111 1 1 333677888876654443332 22335667999995 99
Q ss_pred eEEEEcCCCCCcCCCCCCcccccc--CCCCchHHHHHHHHHHhhh------hcCCcccEEEecCCCChHHHHHHHHH--h
Q 012172 81 VVLKLNGGLGTTMGCTGPKSVIEV--RNGLTFLDLIVIQIENLNA------KYGCNVPLLLMNSFNTHDDTSKIIEK--Y 150 (469)
Q Consensus 81 avviLAGG~GTRmg~~~PK~l~~v--~~gks~L~~~~~~i~~l~~------~~~~~iplviMtS~~t~e~t~~~~~~--~ 150 (469)
++++||||||||+|++.||+++++ ++|+|+||+++++|++++. ..|+.|||+||||..|+|.|.+||+. |
T Consensus 99 a~~llaGgqgtRLg~~~pkg~~~~G~~~~~slf~~qae~il~lq~~a~~~~~~~~~I~w~ImtS~~T~e~T~~~f~~~~~ 178 (477)
T KOG2388|consen 99 AVVLLAGGQGTRLGSSGPKGCYPIGLPSGKSLFQIQAERILKLQELASMAVSDGVDIPWYIMTSAFTHEATLEYFESHKY 178 (477)
T ss_pred eEEEeccCceeeeccCCCcceeecCCccccchhhhhHHHHHHHHHHHhhhhccCCceEEEEecCCCccHHhHhHHhhcCC
Confidence 999999999999999999999875 7899999999999999884 24589999999999999999999997 4
Q ss_pred cC-CCCceEEEEecCcceecCCCCcccCCCCCCCCcccccCCCcccchhccccchHHHHHHcCCcEEEEEeCcc-ccccc
Q 012172 151 SK-SNVEIHTFNQSQYPRLCADDFVPLPCKGKTDKDGWYPPGHGDVFPSLMNSGKLDALISQGKEYVFAANSDN-LGAIV 228 (469)
Q Consensus 151 ~g-~~~~i~~f~Q~~~P~l~~~~~~~~~~~~~~~~~~~~P~GhGd~~~~L~~sg~L~~l~~~G~~~v~v~n~DN-L~~~~ 228 (469)
+| .+.||++|.|+++||++.+|+++++++ .+++++|.|||++|.++.++ |.+|..+|+.|++|+|+|| |++.+
T Consensus 179 FGl~~~qv~~f~Q~~l~c~~~~gk~~le~k---~~~a~ap~gngg~y~ai~~~--l~dm~~rgi~~~hiy~VdnvL~k~a 253 (477)
T KOG2388|consen 179 FGLKPEQVTFFQQGKLPCLDLDGKFILEQK---NSLAAAPDGNGGLYRAIKDQ--LEDMAARGIFYDHIYCVDNVLLKVA 253 (477)
T ss_pred CCCChhHeeeeecccccccccCCceeccCc---cchhcCCCCCcHHHHHHHhh--hhHHHhhcccEEEEEEecceeeEec
Confidence 56 467999999999999999999888776 89999999999999999988 9999999999999999999 99999
Q ss_pred cHHHHHHHHHcCCcceEEEeeeccCCCcceEEEEeC-CeeEEEEeccCChhhhhhcc---ccccccEEEEEeEEEeHHHH
Q 012172 229 DLKILNHLIQNKNEYCMEVTPKTLADVKGGTLISYE-GKVQLLEIAQVPDEHVNEFK---SIEKFKIFNTNNLWVNLKAI 304 (469)
Q Consensus 229 dp~~Lg~~~~~~~~~~~~v~~k~~~~~~~G~iv~~~-g~~~ivEy~~~~~e~~~~~~---~~~~~~~~Nt~~~~~~l~~L 304 (469)
||.|+||++.++++++.++|+|.++.|.+|++|..+ |.+++|||+|++++...... +...+...|+++|+|.+++|
T Consensus 254 DP~fiG~~it~~~d~~~k~V~k~~p~E~vG~~~~~~~G~~~vvEYsEi~~~~a~~~~~d~g~l~~~agnI~nh~ft~dFL 333 (477)
T KOG2388|consen 254 DPVFIGFSITKEADVAAKVVPKINPGEVVGIVALKGQGTPLVVEYSELDAELAKAKAPDGGRLLFNAGNICNHFFTLDFL 333 (477)
T ss_pred ccceeeEEeechhhHhhhhccccCCCCceEEEEecCCCceeEEEecccCHHHHhhcccccCccccCCccHHHHHHhhHHH
Confidence 999999999999999999999999999999999987 99999999999988766542 34566778999999999999
Q ss_pred HHHHHhcccccccccCCCcCC------------CcceehhHHHhhhHhhhcccceeEeecCc-cccccCCc-----hhHH
Q 012172 305 KRLVEADALKMEIIPNPKEVD------------GIKVLQLETAAGAAIRFFDHAIGCNVHRS-RFLPVKAT-----SDLL 366 (469)
Q Consensus 305 ~~~l~~~~~~lp~~~n~K~~~------------g~~~iqle~~~~d~~~~~~~~~~v~v~r~-eF~pVKn~-----~dL~ 366 (469)
++........||+|.+.|+++ .+++|++|+|++|.+++.+++.+++|+|+ +|+|+||. +.+.
T Consensus 334 kk~~~~~~~~lp~H~a~kKip~~~~~g~~~kP~kpnGik~E~fifdvf~~~k~f~~meV~Re~efSPlKng~~~~~D~p~ 413 (477)
T KOG2388|consen 334 KKVTRASVPLLPYHKAEKKIPYVDSTGKLVKPTKPNGIKLEQFIFDVFPSAKKFGLMEVPREEEFSPLKNGGKSSTDNPS 413 (477)
T ss_pred HHhhhcccccchhhhhhccccccccCCcccCCCCCCceeEEeeeeeecccccceeEEecchhhhcCccccCCCCCCCChh
Confidence 999887777799999999986 24699999999999999999999999997 99999995 3589
Q ss_pred HHHHHHHHhhcCceeecCCccCCCCCeEEECCCcc
Q 012172 367 LVQSDLYTLADGFVTRNEARKNPANPTIELGPEFK 401 (469)
Q Consensus 367 ~~~~~~~~l~~g~l~~~~~r~~~~~p~V~l~~~~~ 401 (469)
+++.++-.++..|+..++..+.+..-.|+++|..+
T Consensus 414 T~~~~~l~~h~~wi~~~g~~f~~~~~~~evs~~vs 448 (477)
T KOG2388|consen 414 TARIALLRLHIRWIEKAGGIFSDAEAVVEVSPLVS 448 (477)
T ss_pred HHHHHHHHhhhhehhccCcEEecCcceEEecceee
Confidence 99999999999999999998866545688888744
|
|
| >COG1207 GlmU N-acetylglucosamine-1-phosphate uridyltransferase (contains nucleotidyltransferase and I-patch acetyltransferase domains) [Cell envelope biogenesis, outer membrane] | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.9e-43 Score=353.42 Aligned_cols=311 Identities=16% Similarity=0.239 Sum_probs=257.4
Q ss_pred ceeEEEEcCCCCCcCCCCCCccccccCCCCchHHHHHHHHHHhhhhcCCcccEEEecCCCChHHHHHHHHHhcCCCCceE
Q 012172 79 KLVVLKLNGGLGTTMGCTGPKSVIEVRNGLTFLDLIVIQIENLNAKYGCNVPLLLMNSFNTHDDTSKIIEKYSKSNVEIH 158 (469)
Q Consensus 79 k~avviLAGG~GTRmg~~~PK~l~~v~~gks~L~~~~~~i~~l~~~~~~~iplviMtS~~t~e~t~~~~~~~~g~~~~i~ 158 (469)
.+.+||||+|+||||+|+.||+||+| +||||++|+++.+..+..+ ++.+|+ ++ ..|.+++.+.+. .++.
T Consensus 2 ~~~~vILAAGkGTRMkS~lPKVLH~v-aGkpMl~hVi~~a~~l~~~---~i~vVv--Gh-~ae~V~~~~~~~----~~v~ 70 (460)
T COG1207 2 SLSAVILAAGKGTRMKSDLPKVLHPV-AGKPMLEHVIDAARALGPD---DIVVVV--GH-GAEQVREALAER----DDVE 70 (460)
T ss_pred CceEEEEecCCCccccCCCcccchhc-cCccHHHHHHHHHhhcCcc---eEEEEE--cC-CHHHHHHHhccc----cCce
Confidence 56899999999999999999999999 9999999999999999876 677777 66 889999888752 2589
Q ss_pred EEEecCcceecCCCCcccCCCCCCCCcccccCCCcccchhccccchHHHHHHcCCc-EEEEEeCcc-ccccccHH-HHHH
Q 012172 159 TFNQSQYPRLCADDFVPLPCKGKTDKDGWYPPGHGDVFPSLMNSGKLDALISQGKE-YVFAANSDN-LGAIVDLK-ILNH 235 (469)
Q Consensus 159 ~f~Q~~~P~l~~~~~~~~~~~~~~~~~~~~P~GhGd~~~~L~~sg~L~~l~~~G~~-~v~v~n~DN-L~~~~dp~-~Lg~ 235 (469)
|+.|.. |.|+|++..+.. ..+..+.+ .++|+|+|. |.....+. ++.+
T Consensus 71 ~v~Q~e------------------------qlGTgHAV~~a~------~~l~~~~~g~vLVl~GD~PLit~~TL~~L~~~ 120 (460)
T COG1207 71 FVLQEE------------------------QLGTGHAVLQAL------PALADDYDGDVLVLYGDVPLITAETLEELLAA 120 (460)
T ss_pred EEEecc------------------------cCChHHHHHhhh------hhhhcCCCCcEEEEeCCcccCCHHHHHHHHHh
Confidence 999984 589999976654 33444555 899999999 98875554 6666
Q ss_pred HHHcCCcceEEEeeeccCCCcceEEEEe-CCee-EEEEeccCChhhhhhccccccccEEEEEeEEEeHHHHHHHHHhccc
Q 012172 236 LIQNKNEYCMEVTPKTLADVKGGTLISY-EGKV-QLLEIAQVPDEHVNEFKSIEKFKIFNTNNLWVNLKAIKRLVEADAL 313 (469)
Q Consensus 236 ~~~~~~~~~~~v~~k~~~~~~~G~iv~~-~g~~-~ivEy~~~~~e~~~~~~~~~~~~~~Nt~~~~~~l~~L~~~l~~~~~ 313 (469)
+...++...+ .+.+.++|.+||||++. +|++ +|||.+|+++++ +.++++|+|+|+|+...|.+||.+
T Consensus 121 ~~~~~~~~tv-Lt~~~~dP~GYGRIvr~~~g~V~~IVE~KDA~~ee-------k~I~eiNtGiy~f~~~~L~~~L~~--- 189 (460)
T COG1207 121 HPAHGAAATV-LTAELDDPTGYGRIVRDGNGEVTAIVEEKDASEEE-------KQIKEINTGIYAFDGAALLRALPK--- 189 (460)
T ss_pred hhhcCCceEE-EEEEcCCCCCcceEEEcCCCcEEEEEEcCCCCHHH-------hcCcEEeeeEEEEcHHHHHHHHHH---
Confidence 6554544433 36667889999999997 5676 799999999999 889999999999999999999998
Q ss_pred ccccccCCCcCCCcc----eehhHHHhhhHhhhcccceeEeecC-ccccccCCchhHHHHHHHHH------HhhcCceee
Q 012172 314 KMEIIPNPKEVDGIK----VLQLETAAGAAIRFFDHAIGCNVHR-SRFLPVKATSDLLLVQSDLY------TLADGFVTR 382 (469)
Q Consensus 314 ~lp~~~n~K~~~g~~----~iqle~~~~d~~~~~~~~~~v~v~r-~eF~pVKn~~dL~~~~~~~~------~l~~g~l~~ 382 (469)
+.|+|.+ ||| ++.+...-+ ..+.++.++. +|+++|||+.+|+.+|+.|| +|.+|+.+.
T Consensus 190 ----l~nnNaq-gEYYLTDvI~i~~~~g------~~V~a~~~~d~~E~~GVN~R~qLa~~e~~~q~r~~~~~m~~GVtl~ 258 (460)
T COG1207 190 ----LSNNNAQ-GEYYLTDVIAIARNEG------EKVRAVHVDDEEEVLGVNDRVQLAEAERIMQRRIAEKLMLAGVTLI 258 (460)
T ss_pred ----hcccccc-CcEeHHHHHHHHHhCC------CeEEEEecCchHHhcCcCcHHHHHHHHHHHHHHHHHHHHHcCcEEe
Confidence 8898865 886 343333333 4667788876 49999999999999999988 578899999
Q ss_pred cCCccCCCCCeEEECCCcccccccccccccCCcccccCceEEEeeEEECCCcEEeeeEEEE-ecCCCceeeCCCCeeecc
Q 012172 383 NEARKNPANPTIELGPEFKKVGNFLSRFKSIPSIIELDSLKVTGDVWFGANITLKGKVTIA-AKSGEKLEIPDGAVLENK 461 (469)
Q Consensus 383 ~~~r~~~~~p~V~l~~~~~~~~~~~~~i~~~p~~~~~~~l~v~G~v~fg~~V~i~g~~~I~-~~~~~~~~I~~~s~le~~ 461 (469)
+|+++ ...+.|+++++.. |. .+++++|++.+|++|+|+.+|+|+ +..++.+.|.+|||||++
T Consensus 259 dP~t~-~i~~dv~ig~Dvv--------I~--------p~v~l~G~t~ig~~v~iGpg~~i~ds~I~~~a~I~~~S~ie~s 321 (460)
T COG1207 259 DPATT-YIRGDVEIGRDVV--------IE--------PNVILEGNTVIGDNVVIGPGSVIKDSVIGDNAVIKAYSVIEGS 321 (460)
T ss_pred CCCeE-EEcCcEEECCceE--------Ee--------cCcEEeeeEEECCceEECCCcEEEeeEEcCCCEEEecceeecc
Confidence 99987 4667788877766 64 789999999999999999999999 457778999999999999
Q ss_pred eecCCCCC
Q 012172 462 EINGPGDL 469 (469)
Q Consensus 462 ~v~~~~~~ 469 (469)
.|+.+..|
T Consensus 322 ~vg~~~~V 329 (460)
T COG1207 322 TVGEGATV 329 (460)
T ss_pred EecCCccc
Confidence 99987654
|
|
| >PRK14356 glmU bifunctional N-acetylglucosamine-1-phosphate uridyltransferase/glucosamine-1-phosphate acetyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.90 E-value=2.3e-21 Score=205.47 Aligned_cols=312 Identities=16% Similarity=0.207 Sum_probs=188.1
Q ss_pred ceeEEEEcCCCCCcCCCCCCccccccCCCCchHHHHHHHHHHhhhhcCCcccEEEecCCCChHHHHHHHHHhcCCCCceE
Q 012172 79 KLVVLKLNGGLGTTMGCTGPKSVIEVRNGLTFLDLIVIQIENLNAKYGCNVPLLLMNSFNTHDDTSKIIEKYSKSNVEIH 158 (469)
Q Consensus 79 k~avviLAGG~GTRmg~~~PK~l~~v~~gks~L~~~~~~i~~l~~~~~~~iplviMtS~~t~e~t~~~~~~~~g~~~~i~ 158 (469)
.+.+|+||||+||||+.+.||.|+++ .|+||++|+++++.+...+ .+++.+++ ..+.+.+++.. .++.
T Consensus 5 ~~~aiILAaG~gtR~~~~~pK~l~~i-~gkpli~~~l~~l~~~~~~-----~iivv~~~-~~~~i~~~~~~-----~~~~ 72 (456)
T PRK14356 5 TTGALILAAGKGTRMHSDKPKVLQTL-LGEPMLRFVYRALRPLFGD-----NVWTVVGH-RADMVRAAFPD-----EDAR 72 (456)
T ss_pred ceeEEEEcCCCCccCCCCCCceeccc-CCCcHHHHHHHHHHhcCCC-----cEEEEECC-CHHHHHHhccc-----cCce
Confidence 57789999999999999999999999 9999999999998775311 34444465 56666666532 1244
Q ss_pred EEEecCcceecCCCCcccCCCCCCCCcccccCCCcccchhccccchHHHHHHcCCcEEEEEeCcc-ccccccH-HHHHHH
Q 012172 159 TFNQSQYPRLCADDFVPLPCKGKTDKDGWYPPGHGDVFPSLMNSGKLDALISQGKEYVFAANSDN-LGAIVDL-KILNHL 236 (469)
Q Consensus 159 ~f~Q~~~P~l~~~~~~~~~~~~~~~~~~~~P~GhGd~~~~L~~sg~L~~l~~~G~~~v~v~n~DN-L~~~~dp-~~Lg~~ 236 (469)
+..|. .|.|+|+..... ++.|...+.++++++++|+ +....+. .++..+
T Consensus 73 ~v~~~------------------------~~~Gt~~al~~a-----~~~l~~~~~d~vlv~~gD~P~i~~~~i~~li~~~ 123 (456)
T PRK14356 73 FVLQE------------------------QQLGTGHALQCA-----WPSLTAAGLDRVLVVNGDTPLVTTDTIDDFLKEA 123 (456)
T ss_pred EEEcC------------------------CCCCcHHHHHHH-----HHHHhhcCCCcEEEEeCCcccCCHHHHHHHHHHH
Confidence 44443 146777654322 2344444568999999999 6654332 223222
Q ss_pred HHcCCcceEEEeeeccCCCcceEEEEeCCee-EEEEeccCChhhhhhccccccccEEEEEeEEEeHHHHHHHHHhccccc
Q 012172 237 IQNKNEYCMEVTPKTLADVKGGTLISYEGKV-QLLEIAQVPDEHVNEFKSIEKFKIFNTNNLWVNLKAIKRLVEADALKM 315 (469)
Q Consensus 237 ~~~~~~~~~~v~~k~~~~~~~G~iv~~~g~~-~ivEy~~~~~e~~~~~~~~~~~~~~Nt~~~~~~l~~L~~~l~~~~~~l 315 (469)
.+.+.++.+. +..++..+|++...+|++ .++|..+.++.+.. ......|+|+|+|+.+.++++++.
T Consensus 124 --~~~~~~l~~~-~~~~~~~~g~v~~~~g~V~~~~ek~~~~~~~~~-----~~~~~~~~GiY~f~~~~l~~ll~~----- 190 (456)
T PRK14356 124 --AGADLAFMTL-TLPDPGAYGRVVRRNGHVAAIVEAKDYDEALHG-----PETGEVNAGIYYLRLDAVESLLPR----- 190 (456)
T ss_pred --hcCCEEEEEE-EcCCCCCceEEEEcCCeEEEEEECCCCChHHhh-----hhcCeEEEEEEEEEHHHHHHHHHh-----
Confidence 1444444333 344567789887777877 57887776644211 123578999999999999888764
Q ss_pred ccccCCCcCCCcceehhHHHhhhHhhhcccceeEeecC-ccccccCCchhHHHHHHHHHH------hhcCceeecCCccC
Q 012172 316 EIIPNPKEVDGIKVLQLETAAGAAIRFFDHAIGCNVHR-SRFLPVKATSDLLLVQSDLYT------LADGFVTRNEARKN 388 (469)
Q Consensus 316 p~~~n~K~~~g~~~iqle~~~~d~~~~~~~~~~v~v~r-~eF~pVKn~~dL~~~~~~~~~------l~~g~l~~~~~r~~ 388 (469)
+...... ++ +.+..++..+...-.++.++.+.. ++|..|++..||..++..+.. +..++...+|.
T Consensus 191 --l~~~~~~-~e--~~ltd~i~~~~~~g~~v~~~~~~~~~~~~~I~tp~dl~~a~~~l~~~~~~~~~~~~~~i~~~~--- 262 (456)
T PRK14356 191 --LTNANKS-GE--YYITDLVGLAVAEGMNVLGVNCGEDPNLLGVNTPAELVRSEELLRARIVEKHLESGVLIHAPE--- 262 (456)
T ss_pred --ccCcccC-Cc--EEHHHHHHHHHHCCCeEEEEEcCCcCeEecCcCHHHHHHHHHHHHHHHHHHHHHcCCEEeCCC---
Confidence 3211111 22 344444444443333456666644 589999999999888776653 23345444442
Q ss_pred CCCCeEEECCCcccccccccccccCCcccccCceEEEeeEEECCCcEEeeeEEEE-ecCCCceeeCCCCeeecceecCC
Q 012172 389 PANPTIELGPEFKKVGNFLSRFKSIPSIIELDSLKVTGDVWFGANITLKGKVTIA-AKSGEKLEIPDGAVLENKEINGP 466 (469)
Q Consensus 389 ~~~p~V~l~~~~~~~~~~~~~i~~~p~~~~~~~l~v~G~v~fg~~V~i~g~~~I~-~~~~~~~~I~~~s~le~~~v~~~ 466 (469)
.+.+++...- +. ...|. ..++|.|.+++|+|++|+.+|+|. +..++.+.|.++|+|++++|+.+
T Consensus 263 ----~~~i~~~~~i-~~-~~~i~--------~~~~i~~~~~ig~~~~I~~~~~i~~~~i~~~~~I~~~~~i~~~~ig~~ 327 (456)
T PRK14356 263 ----SVRIGPRATI-EP-GAEIY--------GPCEIYGASRIARGAVIHSHCWLRDAVVSSGATIHSFSHLEGAEVGDG 327 (456)
T ss_pred ----cEEECCCcEE-CC-CCEEe--------CCcEEeCceEECCCCEECCCeEEEeeEECCCCEEeeeEEEcccceecc
Confidence 2444443220 00 01121 345566666777777776666666 23444455555555555544433
|
|
| >PRK14359 glmU bifunctional N-acetylglucosamine-1-phosphate uridyltransferase/glucosamine-1-phosphate acetyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.88 E-value=5.2e-20 Score=193.56 Aligned_cols=307 Identities=18% Similarity=0.204 Sum_probs=194.9
Q ss_pred ceeEEEEcCCCCCcCCCCCCccccccCCCCchHHHHHHHHHHhhhhcCCcccEEEecCCCChHHHHHHHHHhcCCCCceE
Q 012172 79 KLVVLKLNGGLGTTMGCTGPKSVIEVRNGLTFLDLIVIQIENLNAKYGCNVPLLLMNSFNTHDDTSKIIEKYSKSNVEIH 158 (469)
Q Consensus 79 k~avviLAGG~GTRmg~~~PK~l~~v~~gks~L~~~~~~i~~l~~~~~~~iplviMtS~~t~e~t~~~~~~~~g~~~~i~ 158 (469)
++.+||||||+||||+...||.|+|+ .|+|+++|+++++.+.. -.++|.+++ ..+.+.+++.++.. .+.
T Consensus 2 ~~~aiIlAaG~GtRl~~~~pK~Llpi-~gkPli~~~i~~l~~~~------~~i~Ivv~~-~~~~i~~~~~~~~~---~v~ 70 (430)
T PRK14359 2 KLSIIILAAGKGTRMKSSLPKVLHTI-CGKPMLFYILKEAFAIS------DDVHVVLHH-QKERIKEAVLEYFP---GVI 70 (430)
T ss_pred CccEEEEcCCCCccCCCCCCceeCEE-CCccHHHHHHHHHHHcC------CcEEEEECC-CHHHHHHHHHhcCC---ceE
Confidence 46789999999999999999999999 99999999999998752 134444565 67888888876421 355
Q ss_pred EEEecCcceecCCCCcccCCCCCCCCcccccCCCcccchhccccchHHHHHHcCCcEEEEEeCcc-ccccccHHHHHHHH
Q 012172 159 TFNQSQYPRLCADDFVPLPCKGKTDKDGWYPPGHGDVFPSLMNSGKLDALISQGKEYVFAANSDN-LGAIVDLKILNHLI 237 (469)
Q Consensus 159 ~f~Q~~~P~l~~~~~~~~~~~~~~~~~~~~P~GhGd~~~~L~~sg~L~~l~~~G~~~v~v~n~DN-L~~~~dp~~Lg~~~ 237 (469)
++.|.. +.+.|+|+++..+ +...+++++.++|+ +. ++..+..+.
T Consensus 71 ~~~~~~----------------------~~~~gt~~al~~~----------~~~~d~vlv~~gD~p~~---~~~~l~~l~ 115 (430)
T PRK14359 71 FHTQDL----------------------ENYPGTGGALMGI----------EPKHERVLILNGDMPLV---EKDELEKLL 115 (430)
T ss_pred EEEecC----------------------ccCCCcHHHHhhc----------ccCCCeEEEEECCccCC---CHHHHHHHH
Confidence 555542 1256788875431 11247999999999 54 345566666
Q ss_pred HcCCcceEEEeeeccCCCcceEEEEeCCee-EEEEeccCChhhhhhccccccccEEEEEeEEEeHHHHHHHHHhcccccc
Q 012172 238 QNKNEYCMEVTPKTLADVKGGTLISYEGKV-QLLEIAQVPDEHVNEFKSIEKFKIFNTNNLWVNLKAIKRLVEADALKME 316 (469)
Q Consensus 238 ~~~~~~~~~v~~k~~~~~~~G~iv~~~g~~-~ivEy~~~~~e~~~~~~~~~~~~~~Nt~~~~~~l~~L~~~l~~~~~~lp 316 (469)
+.+++..+.+.+.. ++..+|++..++|++ .++|....+.++ ......|+|.|+|+.+.+.++++.
T Consensus 116 ~~~~~~~v~~~~~~-~~~~~g~v~~d~g~v~~i~e~~~~~~~~-------~~~~~~~~Giyif~~~~l~~~~~~------ 181 (430)
T PRK14359 116 ENDADIVMSVFHLA-DPKGYGRVVIENGQVKKIVEQKDANEEE-------LKIKSVNAGVYLFDRKLLEEYLPL------ 181 (430)
T ss_pred hCCCCEEEEEEEcC-CCccCcEEEEcCCeEEEEEECCCCCccc-------ccceEEEeEEEEEEHHHHHHHHHh------
Confidence 66677666555443 345688876667876 577776554332 223567999999999999988764
Q ss_pred cccCCCcCCCcceehhHHHhhhHhhhcccceeEeecCccccccCCchhHHHHHHHHHHh------hcCceeecCCccCCC
Q 012172 317 IIPNPKEVDGIKVLQLETAAGAAIRFFDHAIGCNVHRSRFLPVKATSDLLLVQSDLYTL------ADGFVTRNEARKNPA 390 (469)
Q Consensus 317 ~~~n~K~~~g~~~iqle~~~~d~~~~~~~~~~v~v~r~eF~pVKn~~dL~~~~~~~~~l------~~g~l~~~~~r~~~~ 390 (469)
..+.+ .+++ +.++..+..++..-.++.+++++...+..|.+..||..++..+... ..|.+...|.++. .
T Consensus 182 -~~~~~-~~~e--~~l~d~i~~l~~~g~~v~~~~~~~~~w~dI~t~~dl~~a~~~l~~~~~~~~~~~g~~~~~~~~~~-~ 256 (430)
T PRK14359 182 -LKNQN-AQKE--YYLTDIIALAIEKGETIKAVFVDEENFMGVNSKFELAKAEEIMQERIKKNAMKQGVIMRLPETIY-I 256 (430)
T ss_pred -cCccc-ccCc--eehhhHHHHHHHcCCeEEEEEcCCCEEeCCCCHHHHHHHHHHHHHHHHHHHHHcCCEEecCCeeE-E
Confidence 22111 1122 2334444444444345566777666789999999999988765532 2344333333211 1
Q ss_pred CCe------EEECCCcccccccccccccCCcccccCceEEEeeEEECCCcEEeeeEEEEecCCCceeeCCCCeeecceec
Q 012172 391 NPT------IELGPEFKKVGNFLSRFKSIPSIIELDSLKVTGDVWFGANITLKGKVTIAAKSGEKLEIPDGAVLENKEIN 464 (469)
Q Consensus 391 ~p~------V~l~~~~~~~~~~~~~i~~~p~~~~~~~l~v~G~v~fg~~V~i~g~~~I~~~~~~~~~I~~~s~le~~~v~ 464 (469)
.+. +.++++.. |. ..+.++ ++.+|+++.|+++++..+..|..+.|.++|+|++++|+
T Consensus 257 ~~~~~i~g~~~ig~~~~--------I~--------~~~~i~-~~~i~~~~~I~~~~i~~~~ig~~~~i~~~~~i~~~~ig 319 (430)
T PRK14359 257 ESGVEFEGECELEEGVR--------IL--------GKSKIE-NSHIKAHSVIEESIIENSDVGPLAHIRPKSEIKNTHIG 319 (430)
T ss_pred CCCcEEcCceEECCCCE--------EC--------CCeEEE-eeEECCCCEEeccEEeCCEECCCCEECCCcEEeccEEc
Confidence 112 22222211 21 344454 66677777776644433556666777778888777777
Q ss_pred CCC
Q 012172 465 GPG 467 (469)
Q Consensus 465 ~~~ 467 (469)
.+.
T Consensus 320 ~~~ 322 (430)
T PRK14359 320 NFV 322 (430)
T ss_pred CcE
Confidence 654
|
|
| >PRK14358 glmU bifunctional N-acetylglucosamine-1-phosphate uridyltransferase/glucosamine-1-phosphate acetyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.86 E-value=1e-19 Score=194.54 Aligned_cols=313 Identities=18% Similarity=0.227 Sum_probs=197.0
Q ss_pred cceeEEEEcCCCCCcCCCCCCccccccCCCCchHHHHHHHHHHhhhhcCCcccEEEecCCCChHHHHHHHHHhcCCCCce
Q 012172 78 DKLVVLKLNGGLGTTMGCTGPKSVIEVRNGLTFLDLIVIQIENLNAKYGCNVPLLLMNSFNTHDDTSKIIEKYSKSNVEI 157 (469)
Q Consensus 78 ~k~avviLAGG~GTRmg~~~PK~l~~v~~gks~L~~~~~~i~~l~~~~~~~iplviMtS~~t~e~t~~~~~~~~g~~~~i 157 (469)
+++.+|+||||+||||+...||.|+|+ .|+|||+++++++.+..-+ .+++.+++ ..+.++++++. ..+
T Consensus 6 ~~~~avILAaG~gtRl~~~~pK~llpi-~gkpli~~~l~~l~~~gi~-----~ivvv~~~-~~~~i~~~~~~-----~~i 73 (481)
T PRK14358 6 RPLDVVILAAGQGTRMKSALPKVLHPV-AGRPMVAWAVKAARDLGAR-----KIVVVTGH-GAEQVEAALQG-----SGV 73 (481)
T ss_pred CCceEEEECCCCCCcCCCCCCceecEE-CCeeHHHHHHHHHHhCCCC-----eEEEEeCC-CHHHHHHHhcc-----CCc
Confidence 468899999999999998899999999 9999999999999876422 34444455 56777777642 124
Q ss_pred EEEEecCcceecCCCCcccCCCCCCCCcccccCCCcccchhccccchHHHHHHcCCcEEEEEeCcc-ccccccH-HHHHH
Q 012172 158 HTFNQSQYPRLCADDFVPLPCKGKTDKDGWYPPGHGDVFPSLMNSGKLDALISQGKEYVFAANSDN-LGAIVDL-KILNH 235 (469)
Q Consensus 158 ~~f~Q~~~P~l~~~~~~~~~~~~~~~~~~~~P~GhGd~~~~L~~sg~L~~l~~~G~~~v~v~n~DN-L~~~~dp-~~Lg~ 235 (469)
.++.|. .|.|+|+.+.... +.+ ...-+.++|.++|+ +....+. .++.+
T Consensus 74 ~~v~~~------------------------~~~Gt~~al~~~~-----~~l-~~~~~~~lV~~gD~P~i~~~~l~~ll~~ 123 (481)
T PRK14358 74 AFARQE------------------------QQLGTGDAFLSGA-----SAL-TEGDADILVLYGDTPLLRPDTLRALVAD 123 (481)
T ss_pred EEecCC------------------------CcCCcHHHHHHHH-----HHh-hCCCCcEEEEeCCeeccCHHHHHHHHHH
Confidence 443332 2578888754322 222 22224578899999 6655443 44556
Q ss_pred HHHcCCcceEEEeeeccCCCcceEEEEe-CCee-EEEEeccCChhhhhhccccccccEEEEEeEEEeHHHHHHHHHhccc
Q 012172 236 LIQNKNEYCMEVTPKTLADVKGGTLISY-EGKV-QLLEIAQVPDEHVNEFKSIEKFKIFNTNNLWVNLKAIKRLVEADAL 313 (469)
Q Consensus 236 ~~~~~~~~~~~v~~k~~~~~~~G~iv~~-~g~~-~ivEy~~~~~e~~~~~~~~~~~~~~Nt~~~~~~l~~L~~~l~~~~~ 313 (469)
+.++++++.+.+.+. +++.+||++..+ +|++ .++|..+.++.+ .....+|+|.|.|+.+. .++++.
T Consensus 124 ~~~~~~~~ti~~~~~-~~~~~yG~v~~d~~g~v~~~~Ek~~~~~~~-------~~~~~~n~Giyi~~~~~-~~~~~~--- 191 (481)
T PRK14358 124 HRAQGSAMTILTGEL-PDATGYGRIVRGADGAVERIVEQKDATDAE-------KAIGEFNSGVYVFDARA-PELARR--- 191 (481)
T ss_pred HHhcCCeEEEEEEEc-CCCCCceEEEECCCCCEEEEEECCCCChhH-------hhCCeEEEEEEEEchHH-HHHHHh---
Confidence 666666665544333 355679998764 6776 588876654433 22356899999999664 344443
Q ss_pred ccccccCCCcCCCcceehhHHHhhhHhhhcccceeEeec-CccccccCCchhHHHHHHHHH------HhhcCceeecCCc
Q 012172 314 KMEIIPNPKEVDGIKVLQLETAAGAAIRFFDHAIGCNVH-RSRFLPVKATSDLLLVQSDLY------TLADGFVTRNEAR 386 (469)
Q Consensus 314 ~lp~~~n~K~~~g~~~iqle~~~~d~~~~~~~~~~v~v~-r~eF~pVKn~~dL~~~~~~~~------~l~~g~l~~~~~r 386 (469)
+...+.. ++ +.|..++..++..-.++.++.+. .+++..++++.+|+.+++.+. .+..+.....|..
T Consensus 192 ----i~~~~~~-ge--~~l~d~i~~~~~~g~~i~~~~~~~~~~~i~~~~~~~l~~~~~~l~~~~~~~~~~~~~~~~~~~~ 264 (481)
T PRK14358 192 ----IGNDNKA-GE--YYLTDLLGLYRAGGAQVRAFKLSDPDEVLGANDRAGLAQLEATLRRRINEAHMKAGVTLQDPGT 264 (481)
T ss_pred ----cCCCccC-Ce--EEHHHHHHHHHHCCCeEEEEecCCHHHhcCCCCHHHHHHHHHHHHHHHHHHHHhCCCEEecCCe
Confidence 2222111 33 44556665555543445566554 368999999887766553332 2233444444432
Q ss_pred cCCCCCeEEECCCcccccccccccccCCcccccCceEEEeeEEECCCcEEeeeEEEE-ecCCCceeeCCCCeeecceecC
Q 012172 387 KNPANPTIELGPEFKKVGNFLSRFKSIPSIIELDSLKVTGDVWFGANITLKGKVTIA-AKSGEKLEIPDGAVLENKEING 465 (469)
Q Consensus 387 ~~~~~p~V~l~~~~~~~~~~~~~i~~~p~~~~~~~l~v~G~v~fg~~V~i~g~~~I~-~~~~~~~~I~~~s~le~~~v~~ 465 (469)
+ ...|.+.+++... |. ..++|.|++++|++++|+.+|+|. +..++.+.|.++++|++++|+.
T Consensus 265 ~-~i~~~~~Ig~~~~--------I~--------~~~~I~~~v~Ig~~~~I~~~~~i~~svI~~~~~I~~~~~i~~~~ig~ 327 (481)
T PRK14358 265 I-LIEDTVTLGRDVT--------IE--------PGVLLRGQTRVADGVTIGAYSVVTDSVLHEGAVIKPHSVLEGAEVGA 327 (481)
T ss_pred e-eccCCcEECCCCE--------Ee--------CCcEEeCCcEECCCCEECCCCEEeeeEECCCCEEeecceecCCeEeC
Confidence 2 1123344443322 42 578888888888888888888887 4466667788888888877776
Q ss_pred CCC
Q 012172 466 PGD 468 (469)
Q Consensus 466 ~~~ 468 (469)
+..
T Consensus 328 ~~~ 330 (481)
T PRK14358 328 GSD 330 (481)
T ss_pred ceE
Confidence 543
|
|
| >PRK09451 glmU bifunctional N-acetylglucosamine-1-phosphate uridyltransferase/glucosamine-1-phosphate acetyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.85 E-value=2.6e-19 Score=190.01 Aligned_cols=309 Identities=18% Similarity=0.229 Sum_probs=189.7
Q ss_pred ceeEEEEcCCCCCcCCCCCCccccccCCCCchHHHHHHHHHHhhhhcCCcccEEEecCCCChHHHHHHHHHhcCCCCceE
Q 012172 79 KLVVLKLNGGLGTTMGCTGPKSVIEVRNGLTFLDLIVIQIENLNAKYGCNVPLLLMNSFNTHDDTSKIIEKYSKSNVEIH 158 (469)
Q Consensus 79 k~avviLAGG~GTRmg~~~PK~l~~v~~gks~L~~~~~~i~~l~~~~~~~iplviMtS~~t~e~t~~~~~~~~g~~~~i~ 158 (469)
++.+|+||||+||||+...||.|+|+ .|+|+++++++++....-+ .+++.+++ ..+.+++++.. ..+.
T Consensus 5 ~~~aiIlAaG~gtRl~~~~pK~l~~i-~gkpli~~~i~~l~~~gi~-----~i~vv~~~-~~~~i~~~~~~-----~~~~ 72 (456)
T PRK09451 5 AMSVVILAAGKGTRMYSDLPKVLHTL-AGKPMVQHVIDAANELGAQ-----HVHLVYGH-GGDLLKQTLAD-----EPLN 72 (456)
T ss_pred CceEEEEcCCCCCcCCCCCChhccee-CChhHHHHHHHHHHhcCCC-----cEEEEECC-CHHHHHHhhcc-----CCcE
Confidence 57899999999999998899999999 9999999999999765321 34444465 55666666632 1345
Q ss_pred EEEecCcceecCCCCcccCCCCCCCCcccccCCCcccchhccccchHHHHHHcCCcEEEEEeCcc-ccccccH-HHHHHH
Q 012172 159 TFNQSQYPRLCADDFVPLPCKGKTDKDGWYPPGHGDVFPSLMNSGKLDALISQGKEYVFAANSDN-LGAIVDL-KILNHL 236 (469)
Q Consensus 159 ~f~Q~~~P~l~~~~~~~~~~~~~~~~~~~~P~GhGd~~~~L~~sg~L~~l~~~G~~~v~v~n~DN-L~~~~dp-~~Lg~~ 236 (469)
+..|. .+.|+|+.+.... +.+ . .-++++|.++|+ +....+. .++.++
T Consensus 73 ~i~~~------------------------~~~Gt~~al~~a~-----~~l-~-~~~~vlV~~gD~P~i~~~~i~~l~~~~ 121 (456)
T PRK09451 73 WVLQA------------------------EQLGTGHAMQQAA-----PFF-A-DDEDILMLYGDVPLISVETLQRLRDAK 121 (456)
T ss_pred EEECC------------------------CCCCcHHHHHHHH-----Hhh-c-cCCcEEEEeCCcccCCHHHHHHHHHHh
Confidence 44332 1567887643322 122 1 236899999999 6554342 222222
Q ss_pred HHcCCcceEEEeeeccCCCcceEEEEeCCee-EEEEeccCChhhhhhccccccccEEEEEeEEEeHHHHHHHHHhccccc
Q 012172 237 IQNKNEYCMEVTPKTLADVKGGTLISYEGKV-QLLEIAQVPDEHVNEFKSIEKFKIFNTNNLWVNLKAIKRLVEADALKM 315 (469)
Q Consensus 237 ~~~~~~~~~~v~~k~~~~~~~G~iv~~~g~~-~ivEy~~~~~e~~~~~~~~~~~~~~Nt~~~~~~l~~L~~~l~~~~~~l 315 (469)
.+ ...++ ++.+..++..+|++...+|++ .++|....+++. ...+..|+|+|.|+.+.|.++++.
T Consensus 122 ~~--~~~~i-~~~~~~~~~~yG~v~~~~g~V~~~~EKp~~~~~~-------~~~~~~~~GiYi~~~~~l~~~l~~----- 186 (456)
T PRK09451 122 PQ--GGIGL-LTVKLDNPTGYGRITRENGKVVGIVEQKDATDEQ-------RQIQEINTGILVANGADLKRWLAK----- 186 (456)
T ss_pred hc--CCEEE-EEEEcCCCCCceEEEecCCeEEEEEECCCCChHH-------hhccEEEEEEEEEEHHHHHHHHHh-----
Confidence 21 12222 233334556789876567777 588876554432 234578999999999999888765
Q ss_pred ccccCCCcCCCcceehhHHHhhhHhhhcccceeEeecCc-cccccCCchhHHHHHHHHHH------hhcCceeecCCccC
Q 012172 316 EIIPNPKEVDGIKVLQLETAAGAAIRFFDHAIGCNVHRS-RFLPVKATSDLLLVQSDLYT------LADGFVTRNEARKN 388 (469)
Q Consensus 316 p~~~n~K~~~g~~~iqle~~~~d~~~~~~~~~~v~v~r~-eF~pVKn~~dL~~~~~~~~~------l~~g~l~~~~~r~~ 388 (469)
+.... ..++ +.++.++..++..-.++.++...+. ++.+.++..|+...++.++. +..+..+..|.+.
T Consensus 187 --~~~~~-~~~e--~~l~d~i~~~i~~g~~v~~~~~~~~~~~~G~~~~~di~~~~~y~~~~~~~~~l~~~~~~~~p~~~- 260 (456)
T PRK09451 187 --LTNNN-AQGE--YYITDIIALAHQEGREIVAVHPQRLSEVEGVNNRLQLARLERVYQAEQAEKLLLAGVMLRDPARF- 260 (456)
T ss_pred --cCCcc-ccCc--eeHHHHHHHHHHCCCeEEEEecCCHHHhcCCCCHHHHHHHHHHHHHHHHHHHHHcCCEEeCCCEE-
Confidence 22111 1123 3345555555554344555555454 88999999999888876653 2334333344422
Q ss_pred CCCCeEEECCCcccccccccccccCCcccccCceEEEeeEEECCCcEEeeeEEEE-ecCCCceeeCCCCeeecceecCCC
Q 012172 389 PANPTIELGPEFKKVGNFLSRFKSIPSIIELDSLKVTGDVWFGANITLKGKVTIA-AKSGEKLEIPDGAVLENKEINGPG 467 (469)
Q Consensus 389 ~~~p~V~l~~~~~~~~~~~~~i~~~p~~~~~~~l~v~G~v~fg~~V~i~g~~~I~-~~~~~~~~I~~~s~le~~~v~~~~ 467 (469)
...+.+.+++... |. ..+.|+|++++|++|.|+.+|+|. +..++.+.|.++++|++++|+.+.
T Consensus 261 ~~~~~~~ig~~~~--------I~--------~~~~i~~~v~ig~~~~I~~~~~i~~~~ig~~~~I~~~~~i~~~~ig~~~ 324 (456)
T PRK09451 261 DLRGTLTHGRDVE--------ID--------TNVIIEGNVTLGNRVKIGAGCVLKNCVIGDDCEISPYSVVEDANLGAAC 324 (456)
T ss_pred EECCcEEECCCCE--------Ec--------CCeEEecCcEECCCCEECCCceEecCEEcCCCEEcCCEEEeCCccCCCc
Confidence 1122344443222 31 456777777788888887777776 335555677777777766665544
|
|
| >PRK05293 glgC glucose-1-phosphate adenylyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.84 E-value=3.7e-19 Score=184.48 Aligned_cols=326 Identities=14% Similarity=0.151 Sum_probs=193.4
Q ss_pred cceeEEEEcCCCCCcCCC---CCCccccccCCCC-chHHHHHHHHHHhhhhcCCcccEEEecCCCChHHHHHHHHHhc--
Q 012172 78 DKLVVLKLNGGLGTTMGC---TGPKSVIEVRNGL-TFLDLIVIQIENLNAKYGCNVPLLLMNSFNTHDDTSKIIEKYS-- 151 (469)
Q Consensus 78 ~k~avviLAGG~GTRmg~---~~PK~l~~v~~gk-s~L~~~~~~i~~l~~~~~~~iplviMtS~~t~e~t~~~~~~~~-- 151 (469)
+++-+||||||.||||+. +.||+|+|+ .|+ |+|+++++++...+-+ .++|.|++ ..+.++++|....
T Consensus 2 ~~m~avILAaG~GtRl~plT~~~PK~llpv-~gk~pli~~~l~~l~~~Gi~-----~i~iv~~~-~~~~i~~~~~~~~~~ 74 (380)
T PRK05293 2 KEMLAMILAGGQGTRLGKLTKNIAKPAVPF-GGKYRIIDFTLSNCANSGID-----TVGVLTQY-QPLELNNHIGIGSPW 74 (380)
T ss_pred CcEEEEEECCCCCcccchhhcCCccceeee-CCceeehhHHHHHHHhCCCC-----EEEEEecC-CHHHHHHHHhCCCcc
Confidence 367899999999999997 789999999 999 8999999999886532 34555565 7888888886421
Q ss_pred CCC---CceEEEEecCcceecCCCCcccCCCCCCCCcccccCCCcccchhccccchHHHHHHcCCcEEEEEeCccccccc
Q 012172 152 KSN---VEIHTFNQSQYPRLCADDFVPLPCKGKTDKDGWYPPGHGDVFPSLMNSGKLDALISQGKEYVFAANSDNLGAIV 228 (469)
Q Consensus 152 g~~---~~i~~f~Q~~~P~l~~~~~~~~~~~~~~~~~~~~P~GhGd~~~~L~~sg~L~~l~~~G~~~v~v~n~DNL~~~~ 228 (469)
+.. ..+.+ .|.. .. ......|.|+|+++.... +.+....-++++|+++|++....
T Consensus 75 ~~~~~~~~~~i-~~~~-----------~~-----~~~~~~~~Gta~al~~a~-----~~l~~~~~~~~lV~~gD~l~~~d 132 (380)
T PRK05293 75 DLDRINGGVTI-LPPY-----------SE-----SEGGKWYKGTAHAIYQNI-----DYIDQYDPEYVLILSGDHIYKMD 132 (380)
T ss_pred cccCCCCCEEE-eCCc-----------cc-----CCCCcccCCcHHHHHHHH-----HHHHhCCCCEEEEecCCEEEcCC
Confidence 100 01111 1100 00 000112578988754332 22322223689999999966542
Q ss_pred cHHHHHHHHHcCCcceEEEee-eccCCCcceEEEEe-CCeeEEEEeccCChhhhhhccccccccEEEEEeEEEeHHHHHH
Q 012172 229 DLKILNHLIQNKNEYCMEVTP-KTLADVKGGTLISY-EGKVQLLEIAQVPDEHVNEFKSIEKFKIFNTNNLWVNLKAIKR 306 (469)
Q Consensus 229 dp~~Lg~~~~~~~~~~~~v~~-k~~~~~~~G~iv~~-~g~~~ivEy~~~~~e~~~~~~~~~~~~~~Nt~~~~~~l~~L~~ 306 (469)
--.++..+..++++..+.+.. ....+.++|++..+ +|++.=++.+ |. . ......|+|+|+|+.+.|.+
T Consensus 133 ~~~ll~~h~~~~~~~tl~~~~~~~~~~~~yG~v~~d~~g~V~~~~eK--p~-~-------~~~~~~~~Giyi~~~~~l~~ 202 (380)
T PRK05293 133 YDKMLDYHKEKEADVTIAVIEVPWEEASRFGIMNTDENMRIVEFEEK--PK-N-------PKSNLASMGIYIFNWKRLKE 202 (380)
T ss_pred HHHHHHHHHhcCCCEEEEEEEcchhhccccCEEEECCCCcEEEEEeC--CC-C-------CCcceeeeEEEEEcHHHHHH
Confidence 235566666667776554422 23456789988764 5666323323 21 1 12356899999999999988
Q ss_pred HHHhcccccccccCCCcCCCcceehhHHHhhhHhhhc----ccceeEeecCccccccCCchhHHHHHHHHHHhhcCceee
Q 012172 307 LVEADALKMEIIPNPKEVDGIKVLQLETAAGAAIRFF----DHAIGCNVHRSRFLPVKATSDLLLVQSDLYTLADGFVTR 382 (469)
Q Consensus 307 ~l~~~~~~lp~~~n~K~~~g~~~iqle~~~~d~~~~~----~~~~~v~v~r~eF~pVKn~~dL~~~~~~~~~l~~g~l~~ 382 (469)
++++ ..+.+ . +.+.+..|+++.. .++.++.++. .+.-|.+..++..++.++.....+....
T Consensus 203 ~l~~-------~~~~~-~------~~~~~~~d~i~~l~~~~~~v~~~~~~g-~w~digt~~~~~~a~~~~l~~~~~~~~~ 267 (380)
T PRK05293 203 YLIE-------DEKNP-N------SSHDFGKNVIPLYLEEGEKLYAYPFKG-YWKDVGTIESLWEANMELLRPENPLNLF 267 (380)
T ss_pred HHHH-------HhhcC-C------chhhhHHHHHHHHhhcCCeEEEEEeCC-EEEeCCCHHHHHHHHHHHcCCCchhhhc
Confidence 8764 21111 0 1112222333321 2344554442 6788999999999988877655443222
Q ss_pred cCC-cc---CCCCCeEEECCCcccccccccccccCCcccccCceEEEe---eEEECCCcEEeeeEEEEe-cCCCceeeCC
Q 012172 383 NEA-RK---NPANPTIELGPEFKKVGNFLSRFKSIPSIIELDSLKVTG---DVWFGANITLKGKVTIAA-KSGEKLEIPD 454 (469)
Q Consensus 383 ~~~-r~---~~~~p~V~l~~~~~~~~~~~~~i~~~p~~~~~~~l~v~G---~v~fg~~V~i~g~~~I~~-~~~~~~~I~~ 454 (469)
.+. ++ ....|.+.++|... +. ++++ ..+++|.| ++++|++++|+.+|+|++ -.+..+.|.+
T Consensus 268 ~~~~~~~~~~~~~~~~~i~~~~~--------i~--~~~I-g~~~~I~~~v~~s~ig~~~~I~~~~~i~~svi~~~~~i~~ 336 (380)
T PRK05293 268 DRNWRIYSVNPNLPPQYIAENAK--------VK--NSLV-VEGCVVYGTVEHSVLFQGVQVGEGSVVKDSVIMPGAKIGE 336 (380)
T ss_pred CCCCceecCCcCCCCCEECCCCE--------Ee--cCEE-CCCCEEcceecceEEcCCCEECCCCEEECCEEeCCCEECC
Confidence 221 11 01223456665533 11 1222 25555554 457788888888777773 3556677888
Q ss_pred CCeeecceecCCCC
Q 012172 455 GAVLENKEINGPGD 468 (469)
Q Consensus 455 ~s~le~~~v~~~~~ 468 (469)
+|+|++++|+.+.+
T Consensus 337 ~~~i~~~ii~~~~~ 350 (380)
T PRK05293 337 NVVIERAIIGENAV 350 (380)
T ss_pred CeEEeEEEECCCCE
Confidence 88888887776554
|
|
| >PRK14352 glmU bifunctional N-acetylglucosamine-1-phosphate uridyltransferase/glucosamine-1-phosphate acetyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.84 E-value=1.2e-18 Score=186.30 Aligned_cols=292 Identities=15% Similarity=0.197 Sum_probs=180.8
Q ss_pred cceeEEEEcCCCCCcCCCCCCccccccCCCCchHHHHHHHHHHhhhhcCCcccEEEecCCCChHHHHHHHHHhcCCCCce
Q 012172 78 DKLVVLKLNGGLGTTMGCTGPKSVIEVRNGLTFLDLIVIQIENLNAKYGCNVPLLLMNSFNTHDDTSKIIEKYSKSNVEI 157 (469)
Q Consensus 78 ~k~avviLAGG~GTRmg~~~PK~l~~v~~gks~L~~~~~~i~~l~~~~~~~iplviMtS~~t~e~t~~~~~~~~g~~~~i 157 (469)
+.+++|+||||.||||+.+.||.|+|+ .|+|||++.++++.+..- -.+++.+++ ..+.+.++++.+. ..+
T Consensus 3 ~~~~avILAaG~gtRm~~~~pK~llpi-~gkpli~~~l~~l~~~g~-----~~iivvv~~-~~~~i~~~~~~~~---~~~ 72 (482)
T PRK14352 3 RPTAVIVLAAGAGTRMRSDTPKVLHTL-AGRSMLGHVLHAAAGLAP-----QHLVVVVGH-DRERVAPAVAELA---PEV 72 (482)
T ss_pred CCceEEEEcCCCCCcCCCCCCceecee-CCccHHHHHHHHHHhcCC-----CcEEEEECC-CHHHHHHHhhccC---Ccc
Confidence 356789999999999998899999999 999999999999988642 245555565 5667777775421 123
Q ss_pred EEEEecCcceecCCCCcccCCCCCCCCcccccCCCcccchhccccchHHHHHHcCCcEEEEEeCcc-ccccccH-HHHHH
Q 012172 158 HTFNQSQYPRLCADDFVPLPCKGKTDKDGWYPPGHGDVFPSLMNSGKLDALISQGKEYVFAANSDN-LGAIVDL-KILNH 235 (469)
Q Consensus 158 ~~f~Q~~~P~l~~~~~~~~~~~~~~~~~~~~P~GhGd~~~~L~~sg~L~~l~~~G~~~v~v~n~DN-L~~~~dp-~~Lg~ 235 (469)
.++.|. .|.|+|+.+.... +.+....-++++|+++|+ +....+. .++..
T Consensus 73 ~~~~~~------------------------~~~Gt~~si~~al-----~~l~~~~~~~vlV~~gD~P~~~~~~l~~li~~ 123 (482)
T PRK14352 73 DIAVQD------------------------EQPGTGHAVQCAL-----EALPADFDGTVVVTAGDVPLLDGETLADLVAT 123 (482)
T ss_pred EEEeCC------------------------CCCCcHHHHHHHH-----HHhccCCCCeEEEEeCCeeccCHHHHHHHHHH
Confidence 333332 2577877543222 222222346899999999 7655443 33444
Q ss_pred HHHcCCcceEEEeeeccCCCcceEEEE-eCCee-EEEEeccCChhhhhhccccccccEEEEEeEEEeHHHHHHHHHhccc
Q 012172 236 LIQNKNEYCMEVTPKTLADVKGGTLIS-YEGKV-QLLEIAQVPDEHVNEFKSIEKFKIFNTNNLWVNLKAIKRLVEADAL 313 (469)
Q Consensus 236 ~~~~~~~~~~~v~~k~~~~~~~G~iv~-~~g~~-~ivEy~~~~~e~~~~~~~~~~~~~~Nt~~~~~~l~~L~~~l~~~~~ 313 (469)
+...++++.+. +.+..++..+|++.. .+|++ .++|..+.+.++ ......|+|.|+|+.+.|.+++++
T Consensus 124 ~~~~~~~~~v~-~~~~~~p~~yg~~~~~~~g~V~~~~EKp~~~~~~-------~~~~~~~~Giy~f~~~~l~~~~~~--- 192 (482)
T PRK14352 124 HTAEGNAVTVL-TTTLDDPTGYGRILRDQDGEVTAIVEQKDATPSQ-------RAIREVNSGVYAFDAAVLRSALAR--- 192 (482)
T ss_pred HHhcCCeEEEE-EeecCCCCCCCEEEECCCCCEEEEEECCCCCHHH-------hhcceEEEEEEEEEHHHHHHHHHh---
Confidence 44445444333 334456778998776 46777 588877765544 334568999999999999888765
Q ss_pred ccccccCCCcCCCcceehhHHHhhhHhhhcccceeEeecC-ccccccCCchhHHHHHHHHH------HhhcCceeecCCc
Q 012172 314 KMEIIPNPKEVDGIKVLQLETAAGAAIRFFDHAIGCNVHR-SRFLPVKATSDLLLVQSDLY------TLADGFVTRNEAR 386 (469)
Q Consensus 314 ~lp~~~n~K~~~g~~~iqle~~~~d~~~~~~~~~~v~v~r-~eF~pVKn~~dL~~~~~~~~------~l~~g~l~~~~~r 386 (469)
+...+. .++ +.+..++..++..-.++.++.++. |+-.+.++..+|..+++.+. .+..|.....|+.
T Consensus 193 ----~~~~~~-~~e--~~l~d~i~~l~~~g~~V~~~~~~g~w~~~g~~~~~~~~~a~~~~~~~~~~~~~~~g~~~~~~~~ 265 (482)
T PRK14352 193 ----LSSDNA-QGE--LYLTDVLAIAREAGHRVGAHHADDSAEVAGVNDRVQLAALGAELNRRIVEAWMRAGVTIVDPAT 265 (482)
T ss_pred ----hCcccc-CCc--EeHHHHHHHHHHCCCeEEEEecCCcceEEcCCCHHHHHHHHHHHHHHHHHHHHhCCCEEECCCe
Confidence 332221 123 334455554554434566666644 46667777777766555443 2233444444432
Q ss_pred cCCCCCeEEECCCcccccccccccccCCcccccCceEEEeeEEECCCcEEeeeEEEE
Q 012172 387 KNPANPTIELGPEFKKVGNFLSRFKSIPSIIELDSLKVTGDVWFGANITLKGKVTIA 443 (469)
Q Consensus 387 ~~~~~p~V~l~~~~~~~~~~~~~i~~~p~~~~~~~l~v~G~v~fg~~V~i~g~~~I~ 443 (469)
. -..|.|.+++... |. ..++|.|+|++|+|++|+.+|+|.
T Consensus 266 ~-~i~~~v~ig~~~~--------I~--------~~~~i~~~v~Ig~~~~I~~~~~i~ 305 (482)
T PRK14352 266 T-WIDVDVTIGRDVV--------IH--------PGTQLLGRTTIGEDAVVGPDTTLT 305 (482)
T ss_pred E-EEeCCEEECCCcE--------Ee--------CCcEEeecCEECCCCEECCCCEEe
Confidence 2 1234466665533 42 456667777777777777777665
|
|
| >PRK14355 glmU bifunctional N-acetylglucosamine-1-phosphate uridyltransferase/glucosamine-1-phosphate acetyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.83 E-value=2.3e-18 Score=183.00 Aligned_cols=314 Identities=15% Similarity=0.150 Sum_probs=197.8
Q ss_pred ceeEEEEcCCCCCcCCCCCCccccccCCCCchHHHHHHHHHHhhhhcCCcccEEEecCCCChHHHHHHHHHhcCCCCceE
Q 012172 79 KLVVLKLNGGLGTTMGCTGPKSVIEVRNGLTFLDLIVIQIENLNAKYGCNVPLLLMNSFNTHDDTSKIIEKYSKSNVEIH 158 (469)
Q Consensus 79 k~avviLAGG~GTRmg~~~PK~l~~v~~gks~L~~~~~~i~~l~~~~~~~iplviMtS~~t~e~t~~~~~~~~g~~~~i~ 158 (469)
++..|+||||.||||+...||.|+|+ .|+|++++.++++.+.+- -.+++.+++ ..+.+.+++.+. ..+.
T Consensus 3 ~~~avIlAaG~g~Rl~~~~pK~l~pi-~g~pli~~~l~~l~~~gi-----~~iiiv~~~-~~~~i~~~~~~~----~~i~ 71 (459)
T PRK14355 3 NLAAIILAAGKGTRMKSDLVKVMHPL-AGRPMVSWPVAAAREAGA-----GRIVLVVGH-QAEKVREHFAGD----GDVS 71 (459)
T ss_pred cceEEEEcCCCCcccCCCCCceecee-CCccHHHHHHHHHHhcCC-----CeEEEEECC-CHHHHHHHhccC----CceE
Confidence 57889999999999998899999999 999999999999887642 245555565 567777777531 1344
Q ss_pred EEEecCcceecCCCCcccCCCCCCCCcccccCCCcccchhccccchHHHHHHcCCcEEEEEeCcc-cccccc-HHHHHHH
Q 012172 159 TFNQSQYPRLCADDFVPLPCKGKTDKDGWYPPGHGDVFPSLMNSGKLDALISQGKEYVFAANSDN-LGAIVD-LKILNHL 236 (469)
Q Consensus 159 ~f~Q~~~P~l~~~~~~~~~~~~~~~~~~~~P~GhGd~~~~L~~sg~L~~l~~~G~~~v~v~n~DN-L~~~~d-p~~Lg~~ 236 (469)
+..|. .|.|+|+.+.... +.+ +...++++|+++|+ +....+ -.++.++
T Consensus 72 ~~~~~------------------------~~~Gt~~al~~a~-----~~l-~~~~~~vlv~~gD~p~~~~~~i~~l~~~~ 121 (459)
T PRK14355 72 FALQE------------------------EQLGTGHAVACAA-----PAL-DGFSGTVLILCGDVPLLRAETLQGMLAAH 121 (459)
T ss_pred EEecC------------------------CCCCHHHHHHHHH-----HHh-hccCCcEEEEECCccCcCHHHHHHHHHHH
Confidence 44443 2468887644322 222 22246899999999 655445 2455555
Q ss_pred HHcCCcceEEEeeeccCCCcceEEEE-eCCee-EEEEeccCChhhhhhccccccccEEEEEeEEEeHHHHHHHHHhcccc
Q 012172 237 IQNKNEYCMEVTPKTLADVKGGTLIS-YEGKV-QLLEIAQVPDEHVNEFKSIEKFKIFNTNNLWVNLKAIKRLVEADALK 314 (469)
Q Consensus 237 ~~~~~~~~~~v~~k~~~~~~~G~iv~-~~g~~-~ivEy~~~~~e~~~~~~~~~~~~~~Nt~~~~~~l~~L~~~l~~~~~~ 314 (469)
...+++..+... +...+..+|.+.. .+|++ .++|.+..++.+ ......|+|+|+|+.+.+.+.++.
T Consensus 122 ~~~~~~~~v~~~-~~~~~~~~g~v~~d~~g~v~~~~ek~~~~~~~-------~~~~~~~~Giy~~~~~~l~~~l~~---- 189 (459)
T PRK14355 122 RATGAAVTVLTA-RLENPFGYGRIVRDADGRVLRIVEEKDATPEE-------RSIREVNSGIYCVEAAFLFDAIGR---- 189 (459)
T ss_pred HhcCCcEEEEEE-EcCCCCcCCEEEEcCCCCEEEEEEcCCCChhH-------hhccEEEEEEEEEeHHHHHHHHHH----
Confidence 555555544333 3344567888765 35666 577755433222 123467999999999988777654
Q ss_pred cccccCCCcCCCcceehhHHHhhhHhhhcccceeEeecC-ccccccCCchhHHHHHHHHHHhh------cCceeecCCcc
Q 012172 315 MEIIPNPKEVDGIKVLQLETAAGAAIRFFDHAIGCNVHR-SRFLPVKATSDLLLVQSDLYTLA------DGFVTRNEARK 387 (469)
Q Consensus 315 lp~~~n~K~~~g~~~iqle~~~~d~~~~~~~~~~v~v~r-~eF~pVKn~~dL~~~~~~~~~l~------~g~l~~~~~r~ 387 (469)
+.+.. ....+.++.++...++.-.++.+++.+. +++..+.+..++..+++.+.... .+.....|...
T Consensus 190 ---~~~~~---~~~e~~~~d~i~~l~~~g~~v~~~~~~~~~~~~~i~~~~~~~~a~~~l~~~~~~~~~~~~~~~i~~~~~ 263 (459)
T PRK14355 190 ---LGNDN---AQGEYYLTDIVAMAAAEGLRCLAFPVADPDEIMGVNDRAQLAEAARVLRRRINRELMLAGVTLIDPETT 263 (459)
T ss_pred ---cCccc---cCCceeHHHHHHHHHHCCCeEEEEEcCCHHHhcCCCCHHHHHHHHHHHHHHHHHHHHhCCCEEECCCce
Confidence 22111 1112344555555554433455666654 47899999999988866544321 22222233210
Q ss_pred CCCCCeEEECCCcccccccccccccCCcccccCceEEEeeEEECCCcEEeeeEEEE-ecCCCceeeCCCCeeecceecCC
Q 012172 388 NPANPTIELGPEFKKVGNFLSRFKSIPSIIELDSLKVTGDVWFGANITLKGKVTIA-AKSGEKLEIPDGAVLENKEINGP 466 (469)
Q Consensus 388 ~~~~p~V~l~~~~~~~~~~~~~i~~~p~~~~~~~l~v~G~v~fg~~V~i~g~~~I~-~~~~~~~~I~~~s~le~~~v~~~ 466 (469)
...+.+.+++... |. .+++|.+++++|+++.|+.+|+|. +..|+.++|.+++++++++|+.+
T Consensus 264 -~i~~~v~ig~~~~--------I~--------~~~~I~~~~~Ig~~~~I~~~~~I~~~~Ig~~~~I~~~~~i~~~~i~~~ 326 (459)
T PRK14355 264 -YIDRGVVIGRDTT--------IY--------PGVCISGDTRIGEGCTIEQGVVIKGCRIGDDVTVKAGSVLEDSVVGDD 326 (459)
T ss_pred -EECCCeEEcCCCE--------Ee--------CCcEEeCCCEECCCCEECCCCEEeCCEEcCCCEECCCeEEeCCEECCC
Confidence 0112234433322 32 567888888889999998888888 44667788888888888877766
Q ss_pred CC
Q 012172 467 GD 468 (469)
Q Consensus 467 ~~ 468 (469)
..
T Consensus 327 ~~ 328 (459)
T PRK14355 327 VA 328 (459)
T ss_pred CE
Confidence 43
|
|
| >PRK00844 glgC glucose-1-phosphate adenylyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.82 E-value=3.2e-18 Score=179.33 Aligned_cols=344 Identities=13% Similarity=0.151 Sum_probs=194.9
Q ss_pred hccceeEEEEcCCCCCcCC---CCCCccccccCCCC-chHHHHHHHHHHhhhhcCCcccEEEecCCCChHHHHHHHHHhc
Q 012172 76 LLDKLVVLKLNGGLGTTMG---CTGPKSVIEVRNGL-TFLDLIVIQIENLNAKYGCNVPLLLMNSFNTHDDTSKIIEKYS 151 (469)
Q Consensus 76 ~l~k~avviLAGG~GTRmg---~~~PK~l~~v~~gk-s~L~~~~~~i~~l~~~~~~~iplviMtS~~t~e~t~~~~~~~~ 151 (469)
+.+++.+||||||.||||+ .+.||+|+|| .|+ |+++|+++++.+.+-+ .++|.+++ ..+.+.++|....
T Consensus 2 ~~~~~~avILAaG~GtRl~PLT~~~PK~llPv-~gk~plI~~~L~~l~~~Gi~-----~i~iv~~~-~~~~i~~~~~~~~ 74 (407)
T PRK00844 2 AMPKVLAIVLAGGEGKRLMPLTADRAKPAVPF-GGSYRLIDFVLSNLVNSGYL-----RIYVLTQY-KSHSLDRHISQTW 74 (407)
T ss_pred CCCceEEEEECCCCCCccchhhcCCcccceee-CCcceEhHHHHHHHHHCCCC-----EEEEEecc-CHHHHHHHHHhCc
Confidence 3568899999999999999 7899999999 998 9999999999987533 34444455 7888999996422
Q ss_pred C-CCCceEEEEecCcceecCCCCcccCCCCCCCCcccccCCCcccchhccccchHHHHHHcCCcEEEEEeCcccccccc-
Q 012172 152 K-SNVEIHTFNQSQYPRLCADDFVPLPCKGKTDKDGWYPPGHGDVFPSLMNSGKLDALISQGKEYVFAANSDNLGAIVD- 229 (469)
Q Consensus 152 g-~~~~i~~f~Q~~~P~l~~~~~~~~~~~~~~~~~~~~P~GhGd~~~~L~~sg~L~~l~~~G~~~v~v~n~DNL~~~~d- 229 (469)
. ....+.++.+. |. . ....+..|.|+||++.... +.+.....++++|+++|++... |
T Consensus 75 ~~~~~~~~~~~~~--~~---------~----~~~~~~~~lGta~al~~a~-----~~i~~~~~~~~lv~~gD~v~~~-dl 133 (407)
T PRK00844 75 RLSGLLGNYITPV--PA---------Q----QRLGKRWYLGSADAIYQSL-----NLIEDEDPDYVVVFGADHVYRM-DP 133 (407)
T ss_pred CccccCCCeEEEC--Cc---------c----cCCCCCcccCCHHHHHHHH-----HHHHhcCCCEEEEecCCEEEcC-CH
Confidence 1 11112222110 00 0 0001123689999864332 2333333468999999997653 4
Q ss_pred HHHHHHHHHcCCcceEEEee-eccCCCcceEEEEe-CCee-EEEEeccCChhhhhhccccccccEEEEEeEEEeHHHHHH
Q 012172 230 LKILNHLIQNKNEYCMEVTP-KTLADVKGGTLISY-EGKV-QLLEIAQVPDEHVNEFKSIEKFKIFNTNNLWVNLKAIKR 306 (469)
Q Consensus 230 p~~Lg~~~~~~~~~~~~v~~-k~~~~~~~G~iv~~-~g~~-~ivEy~~~~~e~~~~~~~~~~~~~~Nt~~~~~~l~~L~~ 306 (469)
-.++.++..+++++.+.+.. ...++..+|++..+ +|++ .++|-.+-+... + ......+.|+|+|.|+.+.|.+
T Consensus 134 ~~l~~~h~~~~~~~ti~~~~~~~~~~~~~Gvv~~d~~g~v~~~~eKp~~~~~~---~-~~~~~~~~~~Giyi~~~~~l~~ 209 (407)
T PRK00844 134 RQMVDFHIESGAGVTVAAIRVPREEASAFGVIEVDPDGRIRGFLEKPADPPGL---P-DDPDEALASMGNYVFTTDALVD 209 (407)
T ss_pred HHHHHHHHhcCCcEEEEEEecchHHcccCCEEEECCCCCEEEEEECCCCcccc---c-CCCCCcEEEeEEEEEeHHHHHH
Confidence 35677777777777665543 23456778988764 5776 466542221110 0 0122457899999999999888
Q ss_pred HHHhcccccccccCCCcCCCcceehhH-HHhhhHhhhcccceeEeec-----------CccccccCCchhHHHHHHHHHH
Q 012172 307 LVEADALKMEIIPNPKEVDGIKVLQLE-TAAGAAIRFFDHAIGCNVH-----------RSRFLPVKATSDLLLVQSDLYT 374 (469)
Q Consensus 307 ~l~~~~~~lp~~~n~K~~~g~~~iqle-~~~~d~~~~~~~~~~v~v~-----------r~eF~pVKn~~dL~~~~~~~~~ 374 (469)
++++ ..+.+. +. ..++ .++..++.. .++.+++.+ +..|.-|.+..++..+..++..
T Consensus 210 ~l~~-------~~~~~~--~~--~~~~~dii~~l~~~-~~v~~~~~~~~~~~g~n~~~~g~w~Digt~~~y~~a~~~lL~ 277 (407)
T PRK00844 210 ALRR-------DAADED--SS--HDMGGDIIPRLVER-GRAYVYDFSTNEVPGATERDRGYWRDVGTIDAYYDAHMDLLS 277 (407)
T ss_pred HHHH-------hhcCCc--cc--ccchhhHHHHHhcc-CeEEEEEcccccccccccCCCCEEEECCCHHHHHHHHHHHhC
Confidence 7764 111110 00 0111 111111111 123333332 1235667777788877777653
Q ss_pred hhcCceeecCC-----ccCCCCCeEEECCC-cc-cccccccccccCCcccccCceEEEeeEEECCCcEEeeeEEEEec-C
Q 012172 375 LADGFVTRNEA-----RKNPANPTIELGPE-FK-KVGNFLSRFKSIPSIIELDSLKVTGDVWFGANITLKGKVTIAAK-S 446 (469)
Q Consensus 375 l~~g~l~~~~~-----r~~~~~p~V~l~~~-~~-~~~~~~~~i~~~p~~~~~~~l~v~G~v~fg~~V~i~g~~~I~~~-~ 446 (469)
.....-.-... +.....|....+.. .. .+. ...+ +....++ .++|++ +++|++|+|+.+|.|.++ .
T Consensus 278 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~i-g~~~~I~--~~~i~~-svIg~~~~I~~~~~i~~sii 351 (407)
T PRK00844 278 VHPVFNLYNREWPIYTSSPNLPPAKFVDGGGRVGSAQ--DSLV-SAGSIIS--GATVRN-SVLSPNVVVESGAEVEDSVL 351 (407)
T ss_pred CCCccccCCCCCcccccCCCCCCceEecCCCccceEE--eCEE-cCCCEEC--CeeeEc-CEECCCCEECCCCEEeeeEE
Confidence 22111000000 00012233333211 00 000 1112 1111221 455654 788888888888888744 6
Q ss_pred CCceeeCCCCeeecceecCCCCC
Q 012172 447 GEKLEIPDGAVLENKEINGPGDL 469 (469)
Q Consensus 447 ~~~~~I~~~s~le~~~v~~~~~~ 469 (469)
++.+.|+++|+|++++|+.+.+|
T Consensus 352 ~~~~~i~~~~~i~~~ii~~~~~i 374 (407)
T PRK00844 352 MDGVRIGRGAVVRRAILDKNVVV 374 (407)
T ss_pred CCCCEECCCCEEEeeEECCCCEE
Confidence 67789999999999998877653
|
|
| >PRK14353 glmU bifunctional N-acetylglucosamine-1-phosphate uridyltransferase/glucosamine-1-phosphate acetyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.82 E-value=7.8e-18 Score=178.05 Aligned_cols=236 Identities=15% Similarity=0.144 Sum_probs=147.8
Q ss_pred ceeEEEEcCCCCCcCCCCCCccccccCCCCchHHHHHHHHHHhhhhcCCcccEEEecCCCChHHHHHHHHHhcCCCCceE
Q 012172 79 KLVVLKLNGGLGTTMGCTGPKSVIEVRNGLTFLDLIVIQIENLNAKYGCNVPLLLMNSFNTHDDTSKIIEKYSKSNVEIH 158 (469)
Q Consensus 79 k~avviLAGG~GTRmg~~~PK~l~~v~~gks~L~~~~~~i~~l~~~~~~~iplviMtS~~t~e~t~~~~~~~~g~~~~i~ 158 (469)
++.+|+||||+||||+...||.|+++ .|+|+|++.++.+....- -.+++.+++ ..+.+.+++.++. ..+.
T Consensus 5 ~~~aiILAaG~gsR~~~~~pK~ll~v-~gkpli~~~l~~l~~~gi-----~~ivvv~~~-~~~~i~~~~~~~~---~~~~ 74 (446)
T PRK14353 5 TCLAIILAAGEGTRMKSSLPKVLHPV-AGRPMLAHVLAAAASLGP-----SRVAVVVGP-GAEAVAAAAAKIA---PDAE 74 (446)
T ss_pred cceEEEEcCCCCCccCCCCCcccCEE-CCchHHHHHHHHHHhCCC-----CcEEEEECC-CHHHHHHHhhccC---CCce
Confidence 57899999999999998889999999 999999999999987642 134444455 5677777775421 1233
Q ss_pred EEEecCcceecCCCCcccCCCCCCCCcccccCCCcccchhccccchHHHHHHcCCcEEEEEeCcc-ccccccHH-HHHHH
Q 012172 159 TFNQSQYPRLCADDFVPLPCKGKTDKDGWYPPGHGDVFPSLMNSGKLDALISQGKEYVFAANSDN-LGAIVDLK-ILNHL 236 (469)
Q Consensus 159 ~f~Q~~~P~l~~~~~~~~~~~~~~~~~~~~P~GhGd~~~~L~~sg~L~~l~~~G~~~v~v~n~DN-L~~~~dp~-~Lg~~ 236 (469)
++.|. .|.|+++.+.... +. ++.+.++++|+++|. +....+.. ++. +
T Consensus 75 ~~~~~------------------------~~~G~~~sl~~a~-----~~-l~~~~~~~lv~~~D~P~i~~~~l~~l~~-~ 123 (446)
T PRK14353 75 IFVQK------------------------ERLGTAHAVLAAR-----EA-LAGGYGDVLVLYGDTPLITAETLARLRE-R 123 (446)
T ss_pred EEEcC------------------------CCCCcHHHHHHHH-----HH-HhccCCCEEEEeCCcccCCHHHHHHHHH-h
Confidence 33332 1456666543221 22 222347899999999 66543322 222 2
Q ss_pred HHcCCcceEEEeeeccCCCcceEEEEeCCee-EEEEeccCChhhhhhccccccccEEEEEeEEEeHHHHHHHHHhccccc
Q 012172 237 IQNKNEYCMEVTPKTLADVKGGTLISYEGKV-QLLEIAQVPDEHVNEFKSIEKFKIFNTNNLWVNLKAIKRLVEADALKM 315 (469)
Q Consensus 237 ~~~~~~~~~~v~~k~~~~~~~G~iv~~~g~~-~ivEy~~~~~e~~~~~~~~~~~~~~Nt~~~~~~l~~L~~~l~~~~~~l 315 (469)
.+.+.+..+.+.+. ..+.++|.+...+|++ .+.|..+.++.+ ......|+|.|+|+.+.+.+++++
T Consensus 124 ~~~~~~~~i~~~~~-~~~~~~g~~~~~~g~v~~~~ek~~~~~~~-------~~~~~~~~Giy~~~~~~l~~~l~~----- 190 (446)
T PRK14353 124 LADGADVVVLGFRA-ADPTGYGRLIVKGGRLVAIVEEKDASDEE-------RAITLCNSGVMAADGADALALLDR----- 190 (446)
T ss_pred HhcCCcEEEEEEEe-CCCCcceEEEECCCeEEEEEECCCCChHH-------hhceEEEEEEEEEEHHHHHHHHHh-----
Confidence 33455555554443 4456788776666776 466655443322 122467999999999888777764
Q ss_pred ccccCCCcCCCcceehhHHHhhhHhhhcccceeEeecCccccccCCchhHHHHHHHHH
Q 012172 316 EIIPNPKEVDGIKVLQLETAAGAAIRFFDHAIGCNVHRSRFLPVKATSDLLLVQSDLY 373 (469)
Q Consensus 316 p~~~n~K~~~g~~~iqle~~~~d~~~~~~~~~~v~v~r~eF~pVKn~~dL~~~~~~~~ 373 (469)
+.+.. .+++ +.++..+..+++.-.++.++..+.+.+..|.+..||..++..++
T Consensus 191 --~~~~~-~~~~--~~~~d~~~~l~~~g~~v~~~~~~~~~~~~I~t~~dl~~a~~~~~ 243 (446)
T PRK14353 191 --VGNDN-AKGE--YYLTDIVAIARAEGLRVAVVEAPEDEVRGINSRAELAEAEAVWQ 243 (446)
T ss_pred --hcccC-CCCc--EeHHHHHHHHHHCCCeEEEEecChhhcccCCCHHHHHHHHHHHH
Confidence 22111 1122 33445554455544445566665667899999999988876554
|
|
| >TIGR01173 glmU UDP-N-acetylglucosamine diphosphorylase/glucosamine-1-phosphate N-acetyltransferase | Back alignment and domain information |
|---|
Probab=99.81 E-value=8.6e-18 Score=177.58 Aligned_cols=307 Identities=21% Similarity=0.257 Sum_probs=177.8
Q ss_pred eEEEEcCCCCCcCCCCCCccccccCCCCchHHHHHHHHHHhhhhcCCcccEEEecCCCChHHHHHHHHHhcCCCCceEEE
Q 012172 81 VVLKLNGGLGTTMGCTGPKSVIEVRNGLTFLDLIVIQIENLNAKYGCNVPLLLMNSFNTHDDTSKIIEKYSKSNVEIHTF 160 (469)
Q Consensus 81 avviLAGG~GTRmg~~~PK~l~~v~~gks~L~~~~~~i~~l~~~~~~~iplviMtS~~t~e~t~~~~~~~~g~~~~i~~f 160 (469)
-+|+||||+||||+.+.||.|+++ .|+|++++.++++.+..- -.+++.+++ ..+.+.+++.++ ++.++
T Consensus 2 ~aiIlAaG~g~R~~~~~pK~l~~i-~gkpli~~~l~~l~~~g~-----~~iiiv~~~-~~~~i~~~~~~~-----~i~~~ 69 (451)
T TIGR01173 2 SVVILAAGKGTRMKSDLPKVLHPL-AGKPMLEHVIDAARALGP-----QKIHVVYGH-GAEQVRKALANR-----DVNWV 69 (451)
T ss_pred eEEEEcCCCCcccCCCCchhhcee-CCccHHHHHHHHHHhCCC-----CeEEEEECC-CHHHHHHHhcCC-----CcEEE
Confidence 478999999999998899999999 999999999999987542 244555566 567777777542 24444
Q ss_pred EecCcceecCCCCcccCCCCCCCCcccccCCCcccchhccccchHHHHHHcCCcEEEEEeCcc-ccccccH-HHHHHHHH
Q 012172 161 NQSQYPRLCADDFVPLPCKGKTDKDGWYPPGHGDVFPSLMNSGKLDALISQGKEYVFAANSDN-LGAIVDL-KILNHLIQ 238 (469)
Q Consensus 161 ~Q~~~P~l~~~~~~~~~~~~~~~~~~~~P~GhGd~~~~L~~sg~L~~l~~~G~~~v~v~n~DN-L~~~~dp-~~Lg~~~~ 238 (469)
.|. .|.|+++.+.... +.+ + .-+++++.++|. +....+. .++-.+.+
T Consensus 70 ~~~------------------------~~~G~~~ai~~a~-----~~l-~-~~~~~lv~~~D~p~i~~~~~~~l~~~~~~ 118 (451)
T TIGR01173 70 LQA------------------------EQLGTGHAVLQAL-----PFL-P-DDGDVLVLYGDVPLISAETLERLLEAHRQ 118 (451)
T ss_pred EcC------------------------CCCchHHHHHHHH-----Hhc-C-CCCcEEEEECCcCCcCHHHHHHHHHHHhh
Confidence 332 1356766533221 122 1 126899999999 6544332 22222222
Q ss_pred cCCcceEEEeeeccCCCcceEEEEe-CCee-EEEEeccCChhhhhhccccccccEEEEEeEEEeHHHHHHHHHhcccccc
Q 012172 239 NKNEYCMEVTPKTLADVKGGTLISY-EGKV-QLLEIAQVPDEHVNEFKSIEKFKIFNTNNLWVNLKAIKRLVEADALKME 316 (469)
Q Consensus 239 ~~~~~~~~v~~k~~~~~~~G~iv~~-~g~~-~ivEy~~~~~e~~~~~~~~~~~~~~Nt~~~~~~l~~L~~~l~~~~~~lp 316 (469)
...++ ++.+..++..+|.+..+ +|++ .+.|....++.+ ......|+|.|+|+.+.|.+.++.
T Consensus 119 --~~~~~-~~~~~~~~~~~g~v~~d~~g~v~~~~ek~~~~~~~-------~~~~~~~~G~y~~~~~~l~~~l~~------ 182 (451)
T TIGR01173 119 --NGITL-LTAKLPDPTGYGRIIRENDGKVTAIVEDKDANAEQ-------KAIKEINTGVYVFDGAALKRWLPK------ 182 (451)
T ss_pred --CCEEE-EEEecCCCCCCCEEEEcCCCCEEEEEEcCCCChHH-------hcCcEEEEEEEEEeHHHHHHHHHh------
Confidence 12222 33334456668877653 5666 466665544322 112357999999999998877754
Q ss_pred cccCCCcCCCcceehhHHHhhhHhhhcccceeEeecC-ccccccCCchhHHHHHHHHHH------hhcCceeecCCccCC
Q 012172 317 IIPNPKEVDGIKVLQLETAAGAAIRFFDHAIGCNVHR-SRFLPVKATSDLLLVQSDLYT------LADGFVTRNEARKNP 389 (469)
Q Consensus 317 ~~~n~K~~~g~~~iqle~~~~d~~~~~~~~~~v~v~r-~eF~pVKn~~dL~~~~~~~~~------l~~g~l~~~~~r~~~ 389 (469)
....+ ..++ +.++..+...+..-.++.++..+. +++..+.++.|+..++..+.. +..+.....|... .
T Consensus 183 -~~~~~-~~~e--~~~~~~~~~l~~~g~~v~~~~~~~~~~~~~i~t~~dl~~~~~~l~~~~~~~~~~~~~~~~~~~~~-~ 257 (451)
T TIGR01173 183 -LSNNN-AQGE--YYLTDVIALAVADGETVRAVQVDDSDEVLGVNDRLQLAQLERILQRRIAKKLLLAGVTLRDPARF-D 257 (451)
T ss_pred -ccccc-ccCc--EeHHHHHHHHHHCCCeEEEEEcCChhheecCCCHHHHHHHHHHHHHHHHHHHHhCCCEEecCCeE-E
Confidence 21111 1122 334555554444433455565554 478999999998777665442 2223322223221 1
Q ss_pred CCCeEEECCCcccccccccccccCCcccccCceEEEeeEEECCCcEEeeeEEEEe-cCCCceeeCCCCeeecceecCCC
Q 012172 390 ANPTIELGPEFKKVGNFLSRFKSIPSIIELDSLKVTGDVWFGANITLKGKVTIAA-KSGEKLEIPDGAVLENKEINGPG 467 (469)
Q Consensus 390 ~~p~V~l~~~~~~~~~~~~~i~~~p~~~~~~~l~v~G~v~fg~~V~i~g~~~I~~-~~~~~~~I~~~s~le~~~v~~~~ 467 (469)
..+.+.+++... |. .+++|.|++++|+|+.|+.+|+|.+ ..++.+.|.++++|++++|+.+.
T Consensus 258 i~~~~~ig~~~~--------i~--------~~~~i~~~~~ig~~~~I~~~~~i~~~~i~~~~~I~~~~~i~~~~ig~~~ 320 (451)
T TIGR01173 258 IRGTVEIGRDVE--------ID--------PNVILEGKVKIGDDVVIGPGCVIKNSVIGSNVVIKAYSVLEGSEIGEGC 320 (451)
T ss_pred ECCccEECCCCE--------Ec--------CCeEEeCceEECCCCEECCCcEEeeeEecCCCEEeeecEEecccccCCc
Confidence 223344444322 32 4566666677777777766666663 34444555555555555555443
|
This protein is a bifunctional enzyme, GlmU, which catalyzes last two reactions in the four-step pathway of UDP-N-acetylglucosamine biosynthesis from fructose-6-phosphate. Its reaction product is required from peptidoglycan biosynthesis, LPS biosynthesis in species with LPS, and certain other processes. |
| >COG1208 GCD1 Nucleoside-diphosphate-sugar pyrophosphorylase involved in lipopolysaccharide biosynthesis/translation initiation factor 2B, gamma/epsilon subunits (eIF-2Bgamma/eIF-2Bepsilon) [Cell envelope biogenesis, outer membrane / Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=99.80 E-value=2.4e-17 Score=169.86 Aligned_cols=307 Identities=14% Similarity=0.161 Sum_probs=194.2
Q ss_pred eeEEEEcCCCCCcCCC---CCCccccccCCCCchHHHHHHHHHHhhhhcCCcccEEEecCCCChHHHHHHHHHhcCCCCc
Q 012172 80 LVVLKLNGGLGTTMGC---TGPKSVIEVRNGLTFLDLIVIQIENLNAKYGCNVPLLLMNSFNTHDDTSKIIEKYSKSNVE 156 (469)
Q Consensus 80 ~avviLAGG~GTRmg~---~~PK~l~~v~~gks~L~~~~~~i~~l~~~~~~~iplviMtS~~t~e~t~~~~~~~~g~~~~ 156 (469)
+-+|+||||.||||.- +.||+|+|+ .|||+++|+++.+.+.+-+ -+++.+++ ..+.++++|....+.+.+
T Consensus 2 mkavILagG~GtRLrPlT~~~PKPllpI-~gkPii~~~l~~L~~~Gv~-----eivi~~~y-~~~~i~~~~~d~~~~~~~ 74 (358)
T COG1208 2 MKAVILAGGYGTRLRPLTDDRPKPLLPI-AGKPLIEYVLEALAAAGVE-----EIVLVVGY-LGEQIEEYFGDGEGLGVR 74 (358)
T ss_pred ceEEEEeCCccccccccccCCCccccee-CCccHHHHHHHHHHHCCCc-----EEEEEecc-chHHHHHHHhcccccCCc
Confidence 4579999999999984 789999999 8999999999999886422 34444444 889999999875433446
Q ss_pred eEEEEecCcceecCCCCcccCCCCCCCCcccccCCCcccchhccccchHHHHHHcCCcEEEEEeCccccccccHHHHHHH
Q 012172 157 IHTFNQSQYPRLCADDFVPLPCKGKTDKDGWYPPGHGDVFPSLMNSGKLDALISQGKEYVFAANSDNLGAIVDLKILNHL 236 (469)
Q Consensus 157 i~~f~Q~~~P~l~~~~~~~~~~~~~~~~~~~~P~GhGd~~~~L~~sg~L~~l~~~G~~~v~v~n~DNL~~~~dp~~Lg~~ 236 (469)
|.+..|. .|.|+|+.+.... .++ +.+-+++.|+|++....--.++.++
T Consensus 75 I~y~~e~------------------------~~lGTag~l~~a~------~~l--~~~~f~v~~GDv~~~~dl~~l~~~~ 122 (358)
T COG1208 75 ITYVVEK------------------------EPLGTAGALKNAL------DLL--GGDDFLVLNGDVLTDLDLSELLEFH 122 (358)
T ss_pred eEEEecC------------------------CcCccHHHHHHHH------Hhc--CCCcEEEEECCeeeccCHHHHHHHH
Confidence 7765555 2789999865432 222 2278999999998875323467777
Q ss_pred HHcCCcceEEEeeeccCCCcceEEEEe-CC-ee-EEEEeccCChhhhhhccccccccEEEEEeEEEeHHHHHHHHHhccc
Q 012172 237 IQNKNEYCMEVTPKTLADVKGGTLISY-EG-KV-QLLEIAQVPDEHVNEFKSIEKFKIFNTNNLWVNLKAIKRLVEADAL 313 (469)
Q Consensus 237 ~~~~~~~~~~v~~k~~~~~~~G~iv~~-~g-~~-~ivEy~~~~~e~~~~~~~~~~~~~~Nt~~~~~~l~~L~~~l~~~~~ 313 (469)
..+++...+..+....+ ..+|++... ++ ++ ..+|...- +. ..-...|+|.|+++.+.++ .++.
T Consensus 123 ~~~~~~~~~~~~~~~~~-~~~Gvv~~~~~~~~v~~f~ekp~~--~~-------~~~~~in~Giyi~~~~v~~-~i~~--- 188 (358)
T COG1208 123 KKKGALATIALTRVLDP-SEFGVVETDDGDGRVVEFREKPGP--EE-------PPSNLINAGIYIFDPEVFD-YIEK--- 188 (358)
T ss_pred HhccCccEEEEEecCCC-CcCceEEecCCCceEEEEEecCCC--CC-------CCCceEEeEEEEECHHHhh-hccc---
Confidence 66644445544544444 678877665 33 44 35554311 11 2225789999999999988 2221
Q ss_pred ccccccCCCcCCCcceehhHHHhhh-HhhhcccceeEeecCccccccCCchhHHHHHHHHHHhhcCc--eeecCCcc---
Q 012172 314 KMEIIPNPKEVDGIKVLQLETAAGA-AIRFFDHAIGCNVHRSRFLPVKATSDLLLVQSDLYTLADGF--VTRNEARK--- 387 (469)
Q Consensus 314 ~lp~~~n~K~~~g~~~iqle~~~~d-~~~~~~~~~~v~v~r~eF~pVKn~~dL~~~~~~~~~l~~g~--l~~~~~r~--- 387 (469)
. .+..+ +.-.++ .++.-....++..+. .|..|-+..|++.+.+++....... ........
T Consensus 189 -------~----~~~~~--~~~~~~~l~~~~~~v~~~~~~g-~W~dig~p~d~~~a~~~~~~~~~~~~~~~~~~~~~~~~ 254 (358)
T COG1208 189 -------G----ERFDF--EEELLPALAAKGEDVYGYVFEG-YWLDIGTPEDLLEANELLLRGDGKSPLGPIEEPVVIIR 254 (358)
T ss_pred -------C----Ccccc--hhhHHHHHHhCCCcEEEEEeCC-eEEeCCCHHHHHHHHHHHHhcccccccccccccccccc
Confidence 0 11111 111111 111111122232222 7999999999999999887432221 11100000
Q ss_pred -CCCCCeEEECCCcccccccccccccCCcccccCceEEEeeEEECCCcEEeeeEEEEec-CCCceeeCCCCeeecceecC
Q 012172 388 -NPANPTIELGPEFKKVGNFLSRFKSIPSIIELDSLKVTGDVWFGANITLKGKVTIAAK-SGEKLEIPDGAVLENKEING 465 (469)
Q Consensus 388 -~~~~p~V~l~~~~~~~~~~~~~i~~~p~~~~~~~l~v~G~v~fg~~V~i~g~~~I~~~-~~~~~~I~~~s~le~~~v~~ 465 (469)
....+.+.+++... +. .+..|.+++.+|+|++|+.++.|+++ .-+.+.|.++|++.+++|+.
T Consensus 255 ~~~i~gp~~ig~~~~--------i~--------~~~~i~~~~~ig~~~~I~~~~~i~~Sii~~~~~i~~~~~i~~sIi~~ 318 (358)
T COG1208 255 SAYIIGPVVIGPGAK--------IG--------PGALIGPYTVIGEGVTIGNGVEIKNSIIMDNVVIGHGSYIGDSIIGE 318 (358)
T ss_pred cceEeCCEEECCCCE--------EC--------CCCEECCCcEECCCCEECCCcEEEeeEEEcCCEECCCCEEeeeEEcC
Confidence 01112234443322 42 56678888999999999999888855 55668999999999999999
Q ss_pred CCCC
Q 012172 466 PGDL 469 (469)
Q Consensus 466 ~~~~ 469 (469)
|+.|
T Consensus 319 ~~~i 322 (358)
T COG1208 319 NCKI 322 (358)
T ss_pred CcEE
Confidence 8764
|
|
| >TIGR01208 rmlA_long glucose-1-phosphate thymidylylransferase, long form | Back alignment and domain information |
|---|
Probab=99.80 E-value=2.9e-17 Score=168.69 Aligned_cols=317 Identities=15% Similarity=0.120 Sum_probs=182.4
Q ss_pred EEEEcCCCCCcCCC---CCCccccccCCCCchHHHHHHHHHHhhhhcCCcccEEEecCCCChHHHHHHHHHhcCCCCceE
Q 012172 82 VLKLNGGLGTTMGC---TGPKSVIEVRNGLTFLDLIVIQIENLNAKYGCNVPLLLMNSFNTHDDTSKIIEKYSKSNVEIH 158 (469)
Q Consensus 82 vviLAGG~GTRmg~---~~PK~l~~v~~gks~L~~~~~~i~~l~~~~~~~iplviMtS~~t~e~t~~~~~~~~g~~~~i~ 158 (469)
+|+||||+||||+. ..||.|+|+ .|+|++++.++.+...+-+ .+++++++...+.+.+++......+.++.
T Consensus 2 aiIlAaG~gtRl~plt~~~pK~l~pv-~g~pli~~~l~~l~~~gi~-----~i~vv~~~~~~~~i~~~~~~~~~~~~~~~ 75 (353)
T TIGR01208 2 ALILAAGKGTRLRPLTFTRPKQLIPV-ANKPILQYAIEDLAEAGIT-----DIGIVVGPVTGEEIKEIVGEGERFGAKIT 75 (353)
T ss_pred EEEECCcCcCccCccccCCCccccEE-CCEeHHHHHHHHHHHCCCC-----EEEEEeCCCCHHHHHHHHhcccccCceEE
Confidence 68999999999985 789999999 9999999999999876422 45556666567888888865221122344
Q ss_pred EEEecCcceecCCCCcccCCCCCCCCcccccCCCcccchhccccchHHHHHHcCCcEEEEEeCccccccccHHHHHHHHH
Q 012172 159 TFNQSQYPRLCADDFVPLPCKGKTDKDGWYPPGHGDVFPSLMNSGKLDALISQGKEYVFAANSDNLGAIVDLKILNHLIQ 238 (469)
Q Consensus 159 ~f~Q~~~P~l~~~~~~~~~~~~~~~~~~~~P~GhGd~~~~L~~sg~L~~l~~~G~~~v~v~n~DNL~~~~dp~~Lg~~~~ 238 (469)
++.|. .|.|+++.+.... +.+ . .+.++|.++|++....--.++..+.+
T Consensus 76 ~~~~~------------------------~~~G~~~al~~a~-----~~l-~--~~~~li~~gD~~~~~~l~~l~~~~~~ 123 (353)
T TIGR01208 76 YIVQG------------------------EPLGLAHAVYTAR-----DFL-G--DDDFVVYLGDNLIQDGISRFVKSFEE 123 (353)
T ss_pred EEECC------------------------CCCCHHHHHHHHH-----Hhc-C--CCCEEEEECCeecCccHHHHHHHHHh
Confidence 44343 2578888754432 122 1 24577889999554321356666777
Q ss_pred cCCcceEEEeeeccCCCcceEEEEeC-Cee-EEEEeccCChhhhhhccccccccEEEEEeEEEeHHHHHHHHHhcccccc
Q 012172 239 NKNEYCMEVTPKTLADVKGGTLISYE-GKV-QLLEIAQVPDEHVNEFKSIEKFKIFNTNNLWVNLKAIKRLVEADALKME 316 (469)
Q Consensus 239 ~~~~~~~~v~~k~~~~~~~G~iv~~~-g~~-~ivEy~~~~~e~~~~~~~~~~~~~~Nt~~~~~~l~~L~~~l~~~~~~lp 316 (469)
++++..+.+.+. .++..+|++..++ +++ .++|....+. -...|+|+|+|+.. +.+.+++
T Consensus 124 ~~~d~ti~~~~~-~~~~~~g~~~~~~~~~v~~~~ekp~~~~-----------~~~~~~Giy~~~~~-l~~~l~~------ 184 (353)
T TIGR01208 124 KDYDALILLTKV-RDPTAFGVAVLEDGKRILKLVEKPKEPP-----------SNLAVVGLYMFRPL-IFEAIKN------ 184 (353)
T ss_pred cCCCcEEEEEEC-CChhhCeEEEEcCCCcEEEEEECCCCCC-----------ccceEEEEEEECHH-HHHHHHh------
Confidence 788877666543 3456788876654 455 4676543221 14679999999994 4444443
Q ss_pred cccCCCcCCCcceehhHHHhhhHhhhcccceeEeecCccccccCCchhHHHHHHHHHHhhcCcee-ecCCccCCCCCeEE
Q 012172 317 IIPNPKEVDGIKVLQLETAAGAAIRFFDHAIGCNVHRSRFLPVKATSDLLLVQSDLYTLADGFVT-RNEARKNPANPTIE 395 (469)
Q Consensus 317 ~~~n~K~~~g~~~iqle~~~~d~~~~~~~~~~v~v~r~eF~pVKn~~dL~~~~~~~~~l~~g~l~-~~~~r~~~~~p~V~ 395 (469)
+.. . ..++ +.+..++..++..-.++.++.++. .+..|.+..||+.++.++.......+. ..+. . ...|.+.
T Consensus 185 -~~~-~-~~~e--~~l~d~l~~l~~~g~~v~~~~~~g-~w~digt~~dl~~a~~~ll~~~~~~~~~i~~~-~-~i~~~~~ 256 (353)
T TIGR01208 185 -IKP-S-WRGE--LEITDAIQWLIEKGYKVGGSKVTG-WWKDTGKPEDLLDANRLILDEVEREVQGVDDE-S-KIRGRVV 256 (353)
T ss_pred -cCC-C-CCCc--EEHHHHHHHHHHcCCeEEEEEeCc-EEEeCCCHHHHHHHHHHHHhhcccccCCcCCC-C-EEcCCEE
Confidence 111 1 1133 224455554544433455555543 478899999999999888753211111 0110 0 1223456
Q ss_pred ECCCcccccccccccccCCcccc-c---CceEEEeeEEECCCcEEeeeEEEE-ecCCCceeeCCC-CeeecceecCCCC
Q 012172 396 LGPEFKKVGNFLSRFKSIPSIIE-L---DSLKVTGDVWFGANITLKGKVTIA-AKSGEKLEIPDG-AVLENKEINGPGD 468 (469)
Q Consensus 396 l~~~~~~~~~~~~~i~~~p~~~~-~---~~l~v~G~v~fg~~V~i~g~~~I~-~~~~~~~~I~~~-s~le~~~v~~~~~ 468 (469)
++++..- . ...|.+ |..+. . .+.+|.+++++|++++|+ +++|. +..++.+.|.++ |++++++|+.+.+
T Consensus 257 i~~~~~i-~--~~~i~~-~~~Ig~~~~I~~~~i~~~~~Ig~~~~i~-~~~i~~s~i~~~~~i~~~~~~~~~~ii~~~~~ 330 (353)
T TIGR01208 257 VGEGAKI-V--NSVIRG-PAVIGEDCIIENSYIGPYTSIGEGVVIR-DAEVEHSIVLDESVIEGVQARIVDSVIGKKVR 330 (353)
T ss_pred ECCCCEE-e--CCEEEC-CcEECCCCEEcCcEECCCCEECCCCEEe-eeEEEeeEEcCCCEEcCCcceeecCEEcCCCE
Confidence 6555331 0 011111 11111 0 123455566666666665 34444 345555666666 4777777765543
|
Alternate name: dTDP-D-glucose synthase |
| >PRK14360 glmU bifunctional N-acetylglucosamine-1-phosphate uridyltransferase/glucosamine-1-phosphate acetyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.79 E-value=2.9e-17 Score=173.82 Aligned_cols=232 Identities=16% Similarity=0.188 Sum_probs=145.5
Q ss_pred eeEEEEcCCCCCcCCCCCCccccccCCCCchHHHHHHHHHHhhhhcCCcccEEEecCCCChHHHHHHHHHhcCCCCceEE
Q 012172 80 LVVLKLNGGLGTTMGCTGPKSVIEVRNGLTFLDLIVIQIENLNAKYGCNVPLLLMNSFNTHDDTSKIIEKYSKSNVEIHT 159 (469)
Q Consensus 80 ~avviLAGG~GTRmg~~~PK~l~~v~~gks~L~~~~~~i~~l~~~~~~~iplviMtS~~t~e~t~~~~~~~~g~~~~i~~ 159 (469)
+++|+||||.||||+.+.||.|+|+ .|+|+|++.++++....- ..+++.+++ ..+.+.++++++ ..+.+
T Consensus 2 ~~~iIlAaG~gsR~~~~~pK~ll~v-~gkpli~~~l~~l~~~g~-----~~iivvv~~-~~~~i~~~~~~~----~~i~~ 70 (450)
T PRK14360 2 LAVAILAAGKGTRMKSSLPKVLHPL-GGKSLVERVLDSCEELKP-----DRRLVIVGH-QAEEVEQSLAHL----PGLEF 70 (450)
T ss_pred ceEEEEeCCCCccCCCCCChhcCEE-CChhHHHHHHHHHHhCCC-----CeEEEEECC-CHHHHHHHhccc----CCeEE
Confidence 5789999999999999899999999 999999999999987642 234444455 455666666532 12444
Q ss_pred EEecCcceecCCCCcccCCCCCCCCcccccCCCcccchhccccchHHHHHHcCCcEEEEEeCcc-ccccccH-HHHHHHH
Q 012172 160 FNQSQYPRLCADDFVPLPCKGKTDKDGWYPPGHGDVFPSLMNSGKLDALISQGKEYVFAANSDN-LGAIVDL-KILNHLI 237 (469)
Q Consensus 160 f~Q~~~P~l~~~~~~~~~~~~~~~~~~~~P~GhGd~~~~L~~sg~L~~l~~~G~~~v~v~n~DN-L~~~~dp-~~Lg~~~ 237 (469)
+.|. .+.|+++.+.... +.+. ...++++|+++|. +....+. .++..+.
T Consensus 71 v~~~------------------------~~~G~~~sv~~~~-----~~l~-~~~~~vlV~~~D~P~i~~~~l~~ll~~~~ 120 (450)
T PRK14360 71 VEQQ------------------------PQLGTGHAVQQLL-----PVLK-GFEGDLLVLNGDVPLLRPETLEALLNTHR 120 (450)
T ss_pred EEeC------------------------CcCCcHHHHHHHH-----HHhh-ccCCcEEEEeCCccccCHHHHHHHHHHHH
Confidence 4433 1466766543322 2222 2235789999999 6554332 3344455
Q ss_pred HcCCcceEEEeeeccCCCcceEEEE-eCCee-EEEEeccCChhhhhhccccccccEEEEEeEEEeHHHHHHHHHhccccc
Q 012172 238 QNKNEYCMEVTPKTLADVKGGTLIS-YEGKV-QLLEIAQVPDEHVNEFKSIEKFKIFNTNNLWVNLKAIKRLVEADALKM 315 (469)
Q Consensus 238 ~~~~~~~~~v~~k~~~~~~~G~iv~-~~g~~-~ivEy~~~~~e~~~~~~~~~~~~~~Nt~~~~~~l~~L~~~l~~~~~~l 315 (469)
+.++++.+. +.+..++..+|.+.. .+|++ .++|..+..+.+ ..-.+.|+|.|+|+.+.+.+++++
T Consensus 121 ~~~~~~~~~-~~~~~~~~~~g~~~~d~~g~v~~~~ek~~~~~~~-------~~~~~~~~Giy~f~~~~l~~~~~~----- 187 (450)
T PRK14360 121 SSNADVTLL-TARLPNPKGYGRVFCDGNNLVEQIVEDRDCTPAQ-------RQNNRINAGIYCFNWPALAEVLPK----- 187 (450)
T ss_pred hcCCcEEEE-EEecCCCCCccEEEECCCCCEEEEEECCCCChhH-------hcCcEEEEEEEEEEHHHHHHHHhh-----
Confidence 555555443 333445566887655 45776 577776554433 122468999999999999888764
Q ss_pred ccccCCCcCCCcceehhHHHhhhHhhhcccceeEeecC-ccccccCCchhHHHHHHHHHH
Q 012172 316 EIIPNPKEVDGIKVLQLETAAGAAIRFFDHAIGCNVHR-SRFLPVKATSDLLLVQSDLYT 374 (469)
Q Consensus 316 p~~~n~K~~~g~~~iqle~~~~d~~~~~~~~~~v~v~r-~eF~pVKn~~dL~~~~~~~~~ 374 (469)
....+ ..++ +.++.. ++.+.+...+.+.. .+...+++..||..++.-++.
T Consensus 188 --~~~~~-~~~e--~~~td~----i~~~~~~~~~~v~~~~~~~~i~~~~dl~~~~~~l~~ 238 (450)
T PRK14360 188 --LSSNN-DQKE--YYLTDT----VSLLDPVMAVEVEDYQEINGINDRKQLAQCEEILQN 238 (450)
T ss_pred --ccccc-cCCc--eeHHHH----HHHHhhceEEecCCHHHhhcCCCHHHHHHHHHHHHH
Confidence 21111 0122 233333 33333344555654 478899999999888877653
|
|
| >PRK00725 glgC glucose-1-phosphate adenylyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.79 E-value=2.8e-17 Score=173.21 Aligned_cols=342 Identities=11% Similarity=0.095 Sum_probs=197.3
Q ss_pred HHHhccceeEEEEcCCCCCcCCC---CCCccccccCCCCc-hHHHHHHHHHHhhhhcCCcccEEEecCCCChHHHHHHHH
Q 012172 73 TKKLLDKLVVLKLNGGLGTTMGC---TGPKSVIEVRNGLT-FLDLIVIQIENLNAKYGCNVPLLLMNSFNTHDDTSKIIE 148 (469)
Q Consensus 73 g~~~l~k~avviLAGG~GTRmg~---~~PK~l~~v~~gks-~L~~~~~~i~~l~~~~~~~iplviMtS~~t~e~t~~~~~ 148 (469)
.+..-+++.+||||||.||||+. +.||.|+|+ .|+| ++++.++++...+-+ .++|.|++ ..+.+.++|.
T Consensus 9 ~~~~~~~~~aVILAaG~GtRl~pLT~~~PK~llpv-~gkp~lI~~~l~~l~~~Gi~-----~i~vv~~~-~~~~i~~~~~ 81 (425)
T PRK00725 9 ARQLTRDTLALILAGGRGSRLKELTDKRAKPAVYF-GGKFRIIDFALSNCINSGIR-----RIGVLTQY-KAHSLIRHIQ 81 (425)
T ss_pred hHhhhcceEEEEECCCCCCcchhhhCCCcceeEEE-CCEEEEhHHHHHHHHHCCCC-----eEEEEecC-CHHHHHHHHH
Confidence 34444789999999999999997 789999999 9997 999999999886422 34555565 7888888887
Q ss_pred HhcC-CC----CceEEEEecCcceecCCCCcccCCCCCCCCcccccCCCcccchhccccchHHHHHHcCCcEEEEEeCcc
Q 012172 149 KYSK-SN----VEIHTFNQSQYPRLCADDFVPLPCKGKTDKDGWYPPGHGDVFPSLMNSGKLDALISQGKEYVFAANSDN 223 (469)
Q Consensus 149 ~~~g-~~----~~i~~f~Q~~~P~l~~~~~~~~~~~~~~~~~~~~P~GhGd~~~~L~~sg~L~~l~~~G~~~v~v~n~DN 223 (469)
+..+ .+ ..+..+.+. .....+..|.|+|+++.... +.+....-++++|+++|+
T Consensus 82 ~~~~~~~~~~~~~i~i~~~~-----------------~~~~~e~~~lGTa~al~~a~-----~~l~~~~~d~~lVl~gD~ 139 (425)
T PRK00725 82 RGWSFFREELGEFVDLLPAQ-----------------QRVDEENWYRGTADAVYQNL-----DIIRRYDPKYVVILAGDH 139 (425)
T ss_pred hhhcccccCCCCeEEEeCCc-----------------ccCCCCccccCcHHHHHHHH-----HHHHhcCCCEEEEecCCe
Confidence 5211 00 011111111 00112345789999864432 233333347899999999
Q ss_pred ccccccH-HHHHHHHHcCCcceEEEeee-ccCCCcceEEEEe-CCee-EEEEeccCChhhhhhccccccccEEEEEeEEE
Q 012172 224 LGAIVDL-KILNHLIQNKNEYCMEVTPK-TLADVKGGTLISY-EGKV-QLLEIAQVPDEHVNEFKSIEKFKIFNTNNLWV 299 (469)
Q Consensus 224 L~~~~dp-~~Lg~~~~~~~~~~~~v~~k-~~~~~~~G~iv~~-~g~~-~ivEy~~~~~e~~~~~~~~~~~~~~Nt~~~~~ 299 (469)
+... |. .++.++.++++++.+.+... ..++..+|++..+ +|++ .++| +...+.. ........+.|+|+|.|
T Consensus 140 l~~~-dl~~ll~~h~~~~~~~tl~~~~~~~~~~~~yG~v~~d~~~~V~~~~E-Kp~~~~~---~~~~~~~~l~n~GIYi~ 214 (425)
T PRK00725 140 IYKM-DYSRMLADHVESGADCTVACLEVPREEASAFGVMAVDENDRITAFVE-KPANPPA---MPGDPDKSLASMGIYVF 214 (425)
T ss_pred Eecc-CHHHHHHHHHHcCCCEEEEEEecchhhcccceEEEECCCCCEEEEEE-CCCCccc---cccCccceEEEeeEEEE
Confidence 7654 43 66777777788877665432 2456788998775 5666 5787 3221110 00112345789999999
Q ss_pred eHHHHHHHHHhcccccccccC-CCcCCCcceehhHHHhhhHhhhc---ccceeEeecC----------ccccccCCchhH
Q 012172 300 NLKAIKRLVEADALKMEIIPN-PKEVDGIKVLQLETAAGAAIRFF---DHAIGCNVHR----------SRFLPVKATSDL 365 (469)
Q Consensus 300 ~l~~L~~~l~~~~~~lp~~~n-~K~~~g~~~iqle~~~~d~~~~~---~~~~~v~v~r----------~eF~pVKn~~dL 365 (469)
+.+.|.+++.+ ..+ ++ +. ..++ .|+++.. .++.++..+. .-|.-|.+..++
T Consensus 215 ~~~~L~~~L~~-------~~~~~~---~~--~~~~---~dii~~l~~~~~v~~~~~~g~~~~~~~~~~gyw~digt~~~y 279 (425)
T PRK00725 215 NADYLYELLEE-------DAEDPN---SS--HDFG---KDIIPKIVEEGKVYAHPFSDSCVRSDPEEEPYWRDVGTLDAY 279 (425)
T ss_pred eHHHHHHHHHH-------hhcCCC---cc--chhh---HHHHHHHhccCcEEEEEecCCccccccccCCeEEECCCHHHH
Confidence 99999888764 111 11 11 1111 1222221 1233444331 247889999999
Q ss_pred HHHHHHHHHhhcCc--ee-ecCC--ccCCCCCeEEE--CCCcc-cccccccccccCCcccccCceEEEeeEEECCCcEEe
Q 012172 366 LLVQSDLYTLADGF--VT-RNEA--RKNPANPTIEL--GPEFK-KVGNFLSRFKSIPSIIELDSLKVTGDVWFGANITLK 437 (469)
Q Consensus 366 ~~~~~~~~~l~~g~--l~-~~~~--r~~~~~p~V~l--~~~~~-~~~~~~~~i~~~p~~~~~~~l~v~G~v~fg~~V~i~ 437 (469)
..+..++....... .. ..|. +.....|...+ +.... .+. ...|. .+..+ ..+.|+ ++++|++|+|+
T Consensus 280 ~~an~~ll~~~~~~~~~~~~~~i~t~~~~~~~~~~~~~~~~~~~~~~--~s~i~-~~~~i--~~~~i~-~svi~~~~~I~ 353 (425)
T PRK00725 280 WQANLDLASVTPELDLYDRNWPIWTYQEQLPPAKFVFDRSGRRGMAI--NSLVS-GGCII--SGAVVR-RSVLFSRVRVN 353 (425)
T ss_pred HHHHHHHcCCCchhhccCCCCccccCCCCCCCCeEeccCCCCcceEE--eCEEc-CCcEE--cCcccc-CCEECCCCEEC
Confidence 88877765321110 00 0000 00011222221 11100 000 11121 11111 133343 46778888888
Q ss_pred eeEEEEec-CCCceeeCCCCeeecceecCCCCC
Q 012172 438 GKVTIAAK-SGEKLEIPDGAVLENKEINGPGDL 469 (469)
Q Consensus 438 g~~~I~~~-~~~~~~I~~~s~le~~~v~~~~~~ 469 (469)
.+|.|+++ ....+.|+++|+|++++|+.+.+|
T Consensus 354 ~~~~i~~svi~~~~~I~~~~~i~~~ii~~~~~i 386 (425)
T PRK00725 354 SFSNVEDSVLLPDVNVGRSCRLRRCVIDRGCVI 386 (425)
T ss_pred CCCEEeeeEEcCCCEECCCCEEeeEEECCCCEE
Confidence 77777744 556688999999999998877653
|
|
| >TIGR02092 glgD glucose-1-phosphate adenylyltransferase, GlgD subunit | Back alignment and domain information |
|---|
Probab=99.79 E-value=1.6e-17 Score=171.63 Aligned_cols=320 Identities=12% Similarity=0.101 Sum_probs=185.5
Q ss_pred ceeEEEEcCCCCCcCCC---CCCccccccCCCC-chHHHHHHHHHHhhhhcCCcccEEEecCCCChH-HHHHHHHHhcCC
Q 012172 79 KLVVLKLNGGLGTTMGC---TGPKSVIEVRNGL-TFLDLIVIQIENLNAKYGCNVPLLLMNSFNTHD-DTSKIIEKYSKS 153 (469)
Q Consensus 79 k~avviLAGG~GTRmg~---~~PK~l~~v~~gk-s~L~~~~~~i~~l~~~~~~~iplviMtS~~t~e-~t~~~~~~~~g~ 153 (469)
++.+|+||||.||||+- +.||+|+|| .|| |+|+|+++.+.+.+-+ .+++.+++ .++ .+++||.+....
T Consensus 2 ~~~avila~g~gtRL~PLT~~~PKpLlpV-~gk~PlIe~~l~~L~~~Gi~-----~I~iv~~~-~~~~~I~~~l~~~~~~ 74 (369)
T TIGR02092 2 KMSAIINLTESSKNLSPLTKVRPLASLPF-GGRYRLIDFPLSNMVNAGIR-----NVFIFFKN-KERQSLFDHLGSGREW 74 (369)
T ss_pred cEEEEEECCCCCccccccccCCccccccc-CCeeeEEEEEhhhhhccCCC-----EEEEEeCC-CcHHHHHHHHhCCCCC
Confidence 57789999999999984 889999999 999 9999999999887532 34444466 454 899999652110
Q ss_pred CCc------eEEEEecCcceecCCCCcccCCCCCCCCcccccCCCcccchhccccchHHHHHH-cCCcEEEEEeCccccc
Q 012172 154 NVE------IHTFNQSQYPRLCADDFVPLPCKGKTDKDGWYPPGHGDVFPSLMNSGKLDALIS-QGKEYVFAANSDNLGA 226 (469)
Q Consensus 154 ~~~------i~~f~Q~~~P~l~~~~~~~~~~~~~~~~~~~~P~GhGd~~~~L~~sg~L~~l~~-~G~~~v~v~n~DNL~~ 226 (469)
+.+ +.++.|+ ..|.|+|+++ ++... .+++. .+-++++|+|+|++..
T Consensus 75 ~~~~~~~~~~~~~~~e-----------------------~~~l~tg~~~-a~~~a---~~~l~~~~~~~~lvlnGD~l~~ 127 (369)
T TIGR02092 75 DLHRKRDGLFVFPYND-----------------------RDDLSEGGKR-YFSQN---LEFLKRSTSEYTVVLNSHMVCN 127 (369)
T ss_pred CcccccCcEEEEeccC-----------------------CCCcccChHH-HHHHH---HHHHHhCCCCEEEEECCCEEEe
Confidence 111 1122222 1246677764 22211 12233 2347899999999765
Q ss_pred cccH-HHHHHHHHcCCcceEEEeeec-cCCCcceEEE-E-eCCeeEEEEeccCChhhhhhccccccccEEEEEeEEEeHH
Q 012172 227 IVDL-KILNHLIQNKNEYCMEVTPKT-LADVKGGTLI-S-YEGKVQLLEIAQVPDEHVNEFKSIEKFKIFNTNNLWVNLK 302 (469)
Q Consensus 227 ~~dp-~~Lg~~~~~~~~~~~~v~~k~-~~~~~~G~iv-~-~~g~~~ivEy~~~~~e~~~~~~~~~~~~~~Nt~~~~~~l~ 302 (469)
. |. .++.++.++++++++.+.+.. .++..+|+++ . .+|++..+|..+.++.. ...|+|+|+|+.+
T Consensus 128 ~-dl~~ll~~h~~~~a~~tl~~~~v~~~~~~~~g~vv~~~~~g~v~~~~~~~~~~~~----------~~~~~Giyi~~~~ 196 (369)
T TIGR02092 128 I-DLKAVLKYHEETGKDITVVYKKVKPADASEYDTILRFDESGKVKSIGQNLNPEEE----------ENISLDIYIVSTD 196 (369)
T ss_pred c-CHHHHHHHHHHcCCCEEEEEEecCHHHccccCcEEEEcCCCCEEeccccCCCCCc----------ceeeeeEEEEEHH
Confidence 4 43 566777777777766654432 1344555444 3 34555433333322111 3469999999999
Q ss_pred HHHHHHHhcccccccccCCCcCCCcceehhHHHhhhHhhhcccceeEeecCccccccCCchhHHHHHHHHHHhhcC-cee
Q 012172 303 AIKRLVEADALKMEIIPNPKEVDGIKVLQLETAAGAAIRFFDHAIGCNVHRSRFLPVKATSDLLLVQSDLYTLADG-FVT 381 (469)
Q Consensus 303 ~L~~~l~~~~~~lp~~~n~K~~~g~~~iqle~~~~d~~~~~~~~~~v~v~r~eF~pVKn~~dL~~~~~~~~~l~~g-~l~ 381 (469)
.+.+++++ .... +. ...++.++...+.- .++.++..+ ..+.-|.+..++..|+.++...... .+.
T Consensus 197 ~l~~~l~~-------~~~~----~~-~~~~~d~i~~~~~~-~~v~~~~~~-g~w~dIgt~~~l~~a~~~~l~~~~~~~~~ 262 (369)
T TIGR02092 197 LLIELLYE-------CIQR----GK-LTSLEELIRENLKE-LNINAYEYT-GYLANINSVKSYYKANMDLLDPQNFQSLF 262 (369)
T ss_pred HHHHHHHH-------Hhhc----Cc-cccHHHHHHHHhcc-CcEEEEecC-CceeEcCCHHHHHHHHHHHhCCcchhhhc
Confidence 88777764 1111 11 01112222222211 123333332 2468999999999998886643211 111
Q ss_pred -ecCCcc---CCCCCeEEECCCcccccccccccccCCcccccCceEEEee---EEECCCcEEeeeEEEEec-CCCceeeC
Q 012172 382 -RNEARK---NPANPTIELGPEFKKVGNFLSRFKSIPSIIELDSLKVTGD---VWFGANITLKGKVTIAAK-SGEKLEIP 453 (469)
Q Consensus 382 -~~~~r~---~~~~p~V~l~~~~~~~~~~~~~i~~~p~~~~~~~l~v~G~---v~fg~~V~i~g~~~I~~~-~~~~~~I~ 453 (469)
..+..+ ....|.+.+++... ++ .+++ .++++|++. +++|++++|+++|.|+++ .+..+.|+
T Consensus 263 ~~~~~~~~~~~~~~~p~~i~~~~~--------i~--~~~I-g~~~~i~~~v~~s~i~~~~~I~~~~~i~~sii~~~~~I~ 331 (369)
T TIGR02092 263 YSSQGPIYTKVKDEPPTYYAENSK--------VE--NSLV-ANGCIIEGKVENSILSRGVHVGKDALIKNCIIMQRTVIG 331 (369)
T ss_pred CCCCCceeeccCCCCCcEEcCCCE--------EE--EeEE-cCCCEEeeEEeCCEECCCCEECCCCEEEeeEEeCCCEEC
Confidence 111100 01224456655433 21 1111 155666543 578888888888888744 44568889
Q ss_pred CCCeeecceecCCCC
Q 012172 454 DGAVLENKEINGPGD 468 (469)
Q Consensus 454 ~~s~le~~~v~~~~~ 468 (469)
+++.+++++|+.+.+
T Consensus 332 ~~~~i~~~ii~~~~~ 346 (369)
T TIGR02092 332 EGAHLENVIIDKDVV 346 (369)
T ss_pred CCCEEEEEEECCCCE
Confidence 999998888876643
|
This family is GlgD, an apparent regulatory protein that appears in an alpha2/beta2 heterotetramer with GlgC (glucose-1-phosphate adenylyltransferase, TIGR02091) in a subset of bacteria that use GlgC for glycogen biosynthesis. |
| >PRK14357 glmU bifunctional N-acetylglucosamine-1-phosphate uridyltransferase/glucosamine-1-phosphate acetyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.79 E-value=2.7e-17 Score=174.08 Aligned_cols=226 Identities=17% Similarity=0.203 Sum_probs=145.8
Q ss_pred eEEEEcCCCCCcCCCCCCccccccCCCCchHHHHHHHHHHhhhhcCCcccEEEecCCCChHHHHHHHHHhcCCCCceEEE
Q 012172 81 VVLKLNGGLGTTMGCTGPKSVIEVRNGLTFLDLIVIQIENLNAKYGCNVPLLLMNSFNTHDDTSKIIEKYSKSNVEIHTF 160 (469)
Q Consensus 81 avviLAGG~GTRmg~~~PK~l~~v~~gks~L~~~~~~i~~l~~~~~~~iplviMtS~~t~e~t~~~~~~~~g~~~~i~~f 160 (469)
.+||||||.||||+...||.|+|+ .|+|++++.++.+.... . + ++|.+++ ..+.+.+++.. .+.++
T Consensus 2 ~avIlA~G~gtRl~~~~pK~l~~v-~gkpli~~~l~~l~~~~-~---~--i~vv~~~-~~~~i~~~~~~------~~~~~ 67 (448)
T PRK14357 2 RALVLAAGKGTRMKSKIPKVLHKI-SGKPMINWVIDTAKKVA-Q---K--VGVVLGH-EAELVKKLLPE------WVKIF 67 (448)
T ss_pred eEEEECCCCCccCCCCCCceeeEE-CCeeHHHHHHHHHHhcC-C---c--EEEEeCC-CHHHHHHhccc------ccEEE
Confidence 479999999999998899999999 99999999999988753 1 2 4444454 44555555531 23444
Q ss_pred EecCcceecCCCCcccCCCCCCCCcccccCCCcccchhccccchHHHHHHcCCcEEEEEeCcc-ccccccH-HHHHHHHH
Q 012172 161 NQSQYPRLCADDFVPLPCKGKTDKDGWYPPGHGDVFPSLMNSGKLDALISQGKEYVFAANSDN-LGAIVDL-KILNHLIQ 238 (469)
Q Consensus 161 ~Q~~~P~l~~~~~~~~~~~~~~~~~~~~P~GhGd~~~~L~~sg~L~~l~~~G~~~v~v~n~DN-L~~~~dp-~~Lg~~~~ 238 (469)
.|. .|.|+++.+.... +.+ . ..+++++.++|+ +....|. .++.++.+
T Consensus 68 ~~~------------------------~~~g~~~ai~~a~-----~~l-~-~~~~vlv~~gD~p~i~~~~i~~l~~~~~~ 116 (448)
T PRK14357 68 LQE------------------------EQLGTAHAVMCAR-----DFI-E-PGDDLLILYGDVPLISENTLKRLIEEHNR 116 (448)
T ss_pred ecC------------------------CCCChHHHHHHHH-----Hhc-C-cCCeEEEEeCCcccCCHHHHHHHHHHHHh
Confidence 443 1467777643322 122 1 137899999999 6655453 35666666
Q ss_pred cCCcceEEEeeeccCCCcceEEEEeCCeeEEEEeccCChhhhhhccccccccEEEEEeEEEeHHHHHHHHHhcccccccc
Q 012172 239 NKNEYCMEVTPKTLADVKGGTLISYEGKVQLLEIAQVPDEHVNEFKSIEKFKIFNTNNLWVNLKAIKRLVEADALKMEII 318 (469)
Q Consensus 239 ~~~~~~~~v~~k~~~~~~~G~iv~~~g~~~ivEy~~~~~e~~~~~~~~~~~~~~Nt~~~~~~l~~L~~~l~~~~~~lp~~ 318 (469)
.++++++.+++ ..++..+|.+..++|++.++|...-+... ......|+|+|+|+.+.|.+++++ +
T Consensus 117 ~~~d~ti~~~~-~~~~~~~g~v~~d~g~v~~~e~~~~~~~~-------~~~~~~~~GiYv~~~~~l~~~~~~-------~ 181 (448)
T PRK14357 117 KGADVTILVAD-LEDPTGYGRIIRDGGKYRIVEDKDAPEEE-------KKIKEINTGIYVFSGDFLLEVLPK-------I 181 (448)
T ss_pred cCCeEEEEEEE-cCCCCCcEEEEEcCCeEEEEECCCCChHH-------hcCcEEEeEEEEEEHHHHHHHHHh-------h
Confidence 67776655544 34567789877667888888876544222 223468999999999998887764 2
Q ss_pred cCCCcCCCcceehhHHHhhhHhhhcccceeEeecC-ccccccCCchhHHHHHHHHH
Q 012172 319 PNPKEVDGIKVLQLETAAGAAIRFFDHAIGCNVHR-SRFLPVKATSDLLLVQSDLY 373 (469)
Q Consensus 319 ~n~K~~~g~~~iqle~~~~d~~~~~~~~~~v~v~r-~eF~pVKn~~dL~~~~~~~~ 373 (469)
.+.... +++ .+. |++....++.++.... +++.++.++.+|..+++.+.
T Consensus 182 ~~~~~~-~~~--~~~----d~i~~~~~v~~~~~~~~~~~~~i~~~~~l~~~~~~~~ 230 (448)
T PRK14357 182 KNENAK-GEY--YLT----DAVNFAEKVRVVKTEDLLEITGVNTRIQLAWLEKQLR 230 (448)
T ss_pred CcCCCC-CeE--EHH----HHHHhhhheeEEecCCHHHEEccCCHHHHHHHHHHHH
Confidence 221111 222 222 3333333444555433 57889999999988877664
|
|
| >PRK14354 glmU bifunctional N-acetylglucosamine-1-phosphate uridyltransferase/glucosamine-1-phosphate acetyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.76 E-value=2.3e-16 Score=167.34 Aligned_cols=234 Identities=15% Similarity=0.168 Sum_probs=143.8
Q ss_pred ceeEEEEcCCCCCcCCCCCCccccccCCCCchHHHHHHHHHHhhhhcCCcccEEEecCCCChHHHHHHHHHhcCCCCceE
Q 012172 79 KLVVLKLNGGLGTTMGCTGPKSVIEVRNGLTFLDLIVIQIENLNAKYGCNVPLLLMNSFNTHDDTSKIIEKYSKSNVEIH 158 (469)
Q Consensus 79 k~avviLAGG~GTRmg~~~PK~l~~v~~gks~L~~~~~~i~~l~~~~~~~iplviMtS~~t~e~t~~~~~~~~g~~~~i~ 158 (469)
+..+||||||.||||+...||.|+|+ .|+|++++.++++.+..-. .+++.+++ ..+.+.+++.. .+.
T Consensus 2 ~~~avIlAaG~g~Rl~~~~pK~ll~i-~Gkpli~~~l~~l~~~gi~-----~iivvv~~-~~~~i~~~~~~------~~~ 68 (458)
T PRK14354 2 NRYAIILAAGKGTRMKSKLPKVLHKV-CGKPMVEHVVDSVKKAGID-----KIVTVVGH-GAEEVKEVLGD------RSE 68 (458)
T ss_pred CceEEEEeCCCCcccCCCCChhhCEe-CCccHHHHHHHHHHhCCCC-----eEEEEeCC-CHHHHHHHhcC------CcE
Confidence 45789999999999998899999999 9999999999999765311 33444455 55666666532 123
Q ss_pred EEEecCcceecCCCCcccCCCCCCCCcccccCCCcccchhccccchHHHHHHcCCcEEEEEeCcc-ccccccH-HHHHHH
Q 012172 159 TFNQSQYPRLCADDFVPLPCKGKTDKDGWYPPGHGDVFPSLMNSGKLDALISQGKEYVFAANSDN-LGAIVDL-KILNHL 236 (469)
Q Consensus 159 ~f~Q~~~P~l~~~~~~~~~~~~~~~~~~~~P~GhGd~~~~L~~sg~L~~l~~~G~~~v~v~n~DN-L~~~~dp-~~Lg~~ 236 (469)
+..|. .+.|+++.+.... +.+ +...+++++.++|+ +....+. .++.++
T Consensus 69 ~~~~~------------------------~~~g~~~al~~a~-----~~l-~~~~d~vlv~~~D~p~i~~~~l~~li~~~ 118 (458)
T PRK14354 69 FALQE------------------------EQLGTGHAVMQAE-----EFL-ADKEGTTLVICGDTPLITAETLKNLIDFH 118 (458)
T ss_pred EEEcC------------------------CCCCHHHHHHHHH-----HHh-cccCCeEEEEECCccccCHHHHHHHHHHH
Confidence 22221 1456766543222 222 22236899999999 6655442 344444
Q ss_pred HHcCCcceEEEeeeccCCCcceEEEE-eCCee-EEEEeccCChhhhhhccccccccEEEEEeEEEeHHHHHHHHHhcccc
Q 012172 237 IQNKNEYCMEVTPKTLADVKGGTLIS-YEGKV-QLLEIAQVPDEHVNEFKSIEKFKIFNTNNLWVNLKAIKRLVEADALK 314 (469)
Q Consensus 237 ~~~~~~~~~~v~~k~~~~~~~G~iv~-~~g~~-~ivEy~~~~~e~~~~~~~~~~~~~~Nt~~~~~~l~~L~~~l~~~~~~ 314 (469)
...+++..+.+. ....+..+|.+.. .+|++ .++|.+...+++ ......|+|+|+|+.+.|.+.+++
T Consensus 119 ~~~~~~~t~~~~-~~~~~~~~g~v~~d~~~~V~~~~ek~~~~~~~-------~~~~~~~~Giy~f~~~~l~~~l~~---- 186 (458)
T PRK14354 119 EEHKAAATILTA-IAENPTGYGRIIRNENGEVEKIVEQKDATEEE-------KQIKEINTGTYCFDNKALFEALKK---- 186 (458)
T ss_pred HhcCCceEEEEE-EcCCCCCceEEEEcCCCCEEEEEECCCCChHH-------hcCcEEEEEEEEEEHHHHHHHHHH----
Confidence 444555544333 3345566887654 35666 577765443322 223568999999999988777754
Q ss_pred cccccCCCcCCCcceehhHHHhhhHhhhcccceeEeecC-ccccccCCchhHHHHHHHHH
Q 012172 315 MEIIPNPKEVDGIKVLQLETAAGAAIRFFDHAIGCNVHR-SRFLPVKATSDLLLVQSDLY 373 (469)
Q Consensus 315 lp~~~n~K~~~g~~~iqle~~~~d~~~~~~~~~~v~v~r-~eF~pVKn~~dL~~~~~~~~ 373 (469)
+.+.. ..+++ .+...+...+..-.++.++.++. +....+.+..||..++..++
T Consensus 187 ---~~~~~-~~~~~--~~~d~~~~l~~~g~~v~~~~~~g~~~~i~i~~~~Dl~~a~~ll~ 240 (458)
T PRK14354 187 ---ISNDN-AQGEY--YLTDVIEILKNEGEKVGAYQTEDFEESLGVNDRVALAEAEKVMR 240 (458)
T ss_pred ---hCccc-cCCcE--eHHHHHHHHHHCCCeEEEEecCCcceEEccCCHHHHHHHHHHHH
Confidence 22211 11222 23344443443334566677764 57788999999988876654
|
|
| >PRK02862 glgC glucose-1-phosphate adenylyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.75 E-value=3.9e-16 Score=164.76 Aligned_cols=336 Identities=13% Similarity=0.160 Sum_probs=186.0
Q ss_pred ceeEEEEcCCCCCcCCC---CCCccccccCCCC-chHHHHHHHHHHhhhhcCCcccEEEecCCCChHHHHHHHHHhcC-C
Q 012172 79 KLVVLKLNGGLGTTMGC---TGPKSVIEVRNGL-TFLDLIVIQIENLNAKYGCNVPLLLMNSFNTHDDTSKIIEKYSK-S 153 (469)
Q Consensus 79 k~avviLAGG~GTRmg~---~~PK~l~~v~~gk-s~L~~~~~~i~~l~~~~~~~iplviMtS~~t~e~t~~~~~~~~g-~ 153 (469)
++.+|+||||.||||.. +.||.|+|+ .|+ |+++++++++...+-+ .++|.|++ ..+.++++|.+... .
T Consensus 3 ~~~AVILAaG~GtRL~PLT~~~PK~Llpi-~gk~plI~~~L~~l~~~Gi~-----~vivv~~~-~~~~i~~~l~~~~~~~ 75 (429)
T PRK02862 3 RVLAIILGGGAGTRLYPLTKLRAKPAVPL-AGKYRLIDIPISNCINSGIN-----KIYVLTQF-NSASLNRHISQTYNFD 75 (429)
T ss_pred cEEEEEECCCCCCcchhhhcCCcceeeEE-CCeeEEeHHHHHHHHHCCCC-----EEEEEecC-CHHHHHHHHhcCcCcc
Confidence 67899999999999984 889999999 999 9999999999886422 45555565 77888899875211 0
Q ss_pred --CCceEEEEecCcceecCCCCcccCCCCCCCCcccccCCCcccchhccccchHHHHHHcCCcEEEEEeCccccccccH-
Q 012172 154 --NVEIHTFNQSQYPRLCADDFVPLPCKGKTDKDGWYPPGHGDVFPSLMNSGKLDALISQGKEYVFAANSDNLGAIVDL- 230 (469)
Q Consensus 154 --~~~i~~f~Q~~~P~l~~~~~~~~~~~~~~~~~~~~P~GhGd~~~~L~~sg~L~~l~~~G~~~v~v~n~DNL~~~~dp- 230 (469)
........+. .. .......+.|+||++.... +.+....-++++|+++|++.. .|.
T Consensus 76 ~~~~g~~~i~~~-------------~~---~~~~~~~~lGTa~al~~a~-----~~l~~~~~~~~lVl~gD~l~~-~dl~ 133 (429)
T PRK02862 76 GFSGGFVEVLAA-------------QQ---TPENPSWFQGTADAVRKYL-----WHFQEWDVDEYLILSGDQLYR-MDYR 133 (429)
T ss_pred ccCCCEEEEeCC-------------cc---cCCCCccccCcHHHHHHHH-----HHHHhcCCCEEEEecCCEEEe-CCHH
Confidence 0000000000 00 0001112379999865432 233333346899999999765 343
Q ss_pred HHHHHHHHcCCcceEEEeeec-cCCCcceEEEEe-CCee-EEEEeccCChhh-h-------hhc--cccccccEEEEEeE
Q 012172 231 KILNHLIQNKNEYCMEVTPKT-LADVKGGTLISY-EGKV-QLLEIAQVPDEH-V-------NEF--KSIEKFKIFNTNNL 297 (469)
Q Consensus 231 ~~Lg~~~~~~~~~~~~v~~k~-~~~~~~G~iv~~-~g~~-~ivEy~~~~~e~-~-------~~~--~~~~~~~~~Nt~~~ 297 (469)
.++.++.+.++++++.+.+.. ..+..+|++..+ +|++ .++|..+-+... . ... +......+.|+|+|
T Consensus 134 ~ll~~h~~~~a~~tl~~~~~~~~~~~~yG~i~~d~~g~V~~~~Ekp~~~~~~~~~~~~s~~~~~~~~~~~~~~~~n~Giy 213 (429)
T PRK02862 134 LFVQHHRETGADITLAVLPVDEKDASGFGLMKTDDDGRITEFSEKPKGDELKAMAVDTSRLGLSPEEAKGKPYLASMGIY 213 (429)
T ss_pred HHHHHHHHcCCCEEEEEEecChhhcccceEEEECCCCcEEEEEECCCccccchhcccccccccccccCCCCceEEEEEEE
Confidence 566777777777766553322 335678988764 5676 577765422110 0 000 00112347899999
Q ss_pred EEeHHHHHHHHHhcccccccccCCCcCCCcceehhHHHhhhHhhhcccceeEeecCccccccCCchhHHHHHHHHH-Hhh
Q 012172 298 WVNLKAIKRLVEADALKMEIIPNPKEVDGIKVLQLETAAGAAIRFFDHAIGCNVHRSRFLPVKATSDLLLVQSDLY-TLA 376 (469)
Q Consensus 298 ~~~l~~L~~~l~~~~~~lp~~~n~K~~~g~~~iqle~~~~d~~~~~~~~~~v~v~r~eF~pVKn~~dL~~~~~~~~-~l~ 376 (469)
+|+.+.|.+++++. .+.... ++.+++ .++.- .++.++..+ ..+.-|.+..++..+..++. ...
T Consensus 214 i~~~~vl~~~l~~~-------~~~~~~-~~dil~------~l~~~-~~v~~~~~~-g~w~digt~~~y~~an~~l~~~~~ 277 (429)
T PRK02862 214 VFSRDVLFDLLNKN-------PEYTDF-GKEIIP------EAIRD-YKVQSYLFD-GYWEDIGTIEAFYEANLALTQQPN 277 (429)
T ss_pred EEcHHHHHHHHHHC-------CChhhh-HHHHHH------HHhcc-CcEEEEEeC-CEEEeCCCHHHHHHHHHHHHcCCC
Confidence 99999998887651 000000 111221 11111 123344332 25677899999988877764 211
Q ss_pred cCceeecCCccCCCCCeEEE-CC-CcccccccccccccCCccccc----CceEEEeeEEECCCcEEeeeEEEEecCC---
Q 012172 377 DGFVTRNEARKNPANPTIEL-GP-EFKKVGNFLSRFKSIPSIIEL----DSLKVTGDVWFGANITLKGKVTIAAKSG--- 447 (469)
Q Consensus 377 ~g~l~~~~~r~~~~~p~V~l-~~-~~~~~~~~~~~i~~~p~~~~~----~~l~v~G~v~fg~~V~i~g~~~I~~~~~--- 447 (469)
...-.-.+... ....+.. .| .+. ..++. ++++.. ..+.|. ++++|++++|+.+|+|.++.-
T Consensus 278 ~~~~~~~~~~~--i~~~~~~~~~a~~~-----~~~~~--~~~ig~~~~i~~~~i~-~svi~~~~~Ig~~~~i~~svi~~~ 347 (429)
T PRK02862 278 PPFSFYDEKAP--IYTRARYLPPSKLL-----DATIT--ESIIAEGCIIKNCSIH-HSVLGIRSRIESGCTIEDTLVMGA 347 (429)
T ss_pred CcccccCCCCc--eeccCCCCCCcccc-----ccEEE--eCEECCCCEECCcEEE-EEEEeCCcEECCCCEEEeeEEecC
Confidence 11000000000 0000001 11 011 11111 111110 233443 567777777777777765432
Q ss_pred -----------------CceeeCCCCeeecceecCCCCC
Q 012172 448 -----------------EKLEIPDGAVLENKEINGPGDL 469 (469)
Q Consensus 448 -----------------~~~~I~~~s~le~~~v~~~~~~ 469 (469)
..+.|.++|+|++++|+.+++|
T Consensus 348 ~~~p~~~~~~~~~~~~~~~~~Ig~~~~i~~~ii~~~~~i 386 (429)
T PRK02862 348 DFYESSEEREELRKEGKPPLGIGEGTTIKRAIIDKNARI 386 (429)
T ss_pred cccccccccccccccCCcccEECCCCEEEEEEECCCcEE
Confidence 2477999999999988887654
|
|
| >TIGR02091 glgC glucose-1-phosphate adenylyltransferase | Back alignment and domain information |
|---|
Probab=99.74 E-value=6.3e-16 Score=159.16 Aligned_cols=331 Identities=14% Similarity=0.174 Sum_probs=191.8
Q ss_pred EEEEcCCCCCcCCC---CCCccccccCCCC-chHHHHHHHHHHhhhhcCCcccEEEecCCCChHHHHHHHHHhcCCC---
Q 012172 82 VLKLNGGLGTTMGC---TGPKSVIEVRNGL-TFLDLIVIQIENLNAKYGCNVPLLLMNSFNTHDDTSKIIEKYSKSN--- 154 (469)
Q Consensus 82 vviLAGG~GTRmg~---~~PK~l~~v~~gk-s~L~~~~~~i~~l~~~~~~~iplviMtS~~t~e~t~~~~~~~~g~~--- 154 (469)
+|+||||+||||+. +.||.|+|+ .|+ |++++.++.+.+.+-+ .++|.+++ ..+.+.++|.+..+..
T Consensus 1 aiILAaG~gtRl~plt~~~pK~llpv-~g~~pli~~~l~~l~~~gi~-----~i~iv~~~-~~~~i~~~~~~~~~~~~~~ 73 (361)
T TIGR02091 1 AMVLAGGRGSRLSPLTKRRAKPAVPF-GGKYRIIDFPLSNCINSGIR-----RIGVLTQY-KSHSLNRHIQRGWDFDGFI 73 (361)
T ss_pred CEEeCCCCCCccchhhhCCcccccee-cceeeEeeehhhhhhhcCCc-----eEEEEecc-ChHHHHHHHHhccCccCcc
Confidence 38999999999984 689999999 999 8999999999886532 34555555 6677888887522111
Q ss_pred -CceEEEEecCcceecCCCCcccCCCCCCCCcccccCCCcccchhccccchHHHHHHcCCcEEEEEeCccccccccHHHH
Q 012172 155 -VEIHTFNQSQYPRLCADDFVPLPCKGKTDKDGWYPPGHGDVFPSLMNSGKLDALISQGKEYVFAANSDNLGAIVDLKIL 233 (469)
Q Consensus 155 -~~i~~f~Q~~~P~l~~~~~~~~~~~~~~~~~~~~P~GhGd~~~~L~~sg~L~~l~~~G~~~v~v~n~DNL~~~~dp~~L 233 (469)
..+.++ |... .......|.|+|+...... +.+....-++++|.++|++....-..++
T Consensus 74 ~~~~~~~-~~~~----------------~~~~~~~~~Gt~~al~~a~-----~~~~~~~~~~~lv~~gD~l~~~~l~~~l 131 (361)
T TIGR02091 74 DGFVTLL-PAQQ----------------RESGTDWYQGTADAVYQNL-----DLIEDYDPEYVLILSGDHIYKMDYEKML 131 (361)
T ss_pred CCCEEEe-CCcc----------------cCCCCccccCcHHHHHHHH-----HHHHhcCCCEEEEecCCEEEcCCHHHHH
Confidence 012211 1000 0112234689988754322 2222223468999999996543212456
Q ss_pred HHHHHcCCcceEEEeee-ccCCCcceEEEEe-CCee-EEEEeccCChhhhhhccccccccEEEEEeEEEeHHHHHHHHHh
Q 012172 234 NHLIQNKNEYCMEVTPK-TLADVKGGTLISY-EGKV-QLLEIAQVPDEHVNEFKSIEKFKIFNTNNLWVNLKAIKRLVEA 310 (469)
Q Consensus 234 g~~~~~~~~~~~~v~~k-~~~~~~~G~iv~~-~g~~-~ivEy~~~~~e~~~~~~~~~~~~~~Nt~~~~~~l~~L~~~l~~ 310 (469)
..+..++++..+.+... ......+|++..+ +|++ .++|-..-+... ...+...+.|+|+|.|+.+.|.+.+++
T Consensus 132 ~~~~~~~~~~ti~~~~~~~~~~~~~g~v~~d~~~~v~~~~ekp~~~~~~----~~~~~~~~~~~Giyi~~~~~l~~~l~~ 207 (361)
T TIGR02091 132 DYHIESGADVTIACIPVPRKEASRFGVMQVDEDGRIVDFEEKPANPPSI----PGMPDFALASMGIYIFDKDVLKELLEE 207 (361)
T ss_pred HHHHHcCCCEEEEEEecChHhcccccEEEECCCCCEEEEEECCCCcccc----cccccccEEeeeEEEEcHHHHHHHHHH
Confidence 66655566655544332 2345678887764 4665 355422112111 001223468999999999998777664
Q ss_pred cccccccccCCCcCCCcceehhHHHhhhHhhhcccceeEeecCccccccCCchhHHHHHHHHHHhhcCc------eeecC
Q 012172 311 DALKMEIIPNPKEVDGIKVLQLETAAGAAIRFFDHAIGCNVHRSRFLPVKATSDLLLVQSDLYTLADGF------VTRNE 384 (469)
Q Consensus 311 ~~~~lp~~~n~K~~~g~~~iqle~~~~d~~~~~~~~~~v~v~r~eF~pVKn~~dL~~~~~~~~~l~~g~------l~~~~ 384 (469)
..+.+. +..-+. +.++..++.. .++.++.++ ..+.=|.+..++..+..++.....-. ....+
T Consensus 208 -------~~~~~~--~~~~~~-~d~l~~l~~~-~~v~~~~~~-~~w~digt~~~~~~a~~~~l~~~~~~~~~~~~~~~~~ 275 (361)
T TIGR02091 208 -------DADDPE--SSHDFG-KDIIPRALEE-GSVQAYLFS-GYWRDVGTIDSFWEANMDLVSVVPPFDLYDRKWPIYT 275 (361)
T ss_pred -------HhhcCC--cccccH-HHHHHHHhhc-CceEEEeeC-CEEEECCCHHHHHHHHHHHhCCCchhhccccCCceec
Confidence 211110 000111 1222222222 244555554 45788999999999888876422110 00001
Q ss_pred CccCCCCCeEEECCCcccccccccccccCCcccccCceEEEe----eEEECCCcEEeeeEEEEec-CCCceeeCCCCeee
Q 012172 385 ARKNPANPTIELGPEFKKVGNFLSRFKSIPSIIELDSLKVTG----DVWFGANITLKGKVTIAAK-SGEKLEIPDGAVLE 459 (469)
Q Consensus 385 ~r~~~~~p~V~l~~~~~~~~~~~~~i~~~p~~~~~~~l~v~G----~v~fg~~V~i~g~~~I~~~-~~~~~~I~~~s~le 459 (469)
.. ....|.+.+++... +. ...| .++++|++ ++.+|++++|+.+|+|.++ .+..+.|+++++|.
T Consensus 276 ~~-~~~~~~~~i~~~~~-i~--~~~i--------g~~~~I~~~~v~~s~i~~~~~I~~~~~i~~sii~~~~~v~~~~~l~ 343 (361)
T TIGR02091 276 YN-EFLPPAKFVDSDAQ-VV--DSLV--------SEGCIISGATVSHSVLGIRVRIGSGSTVEDSVIMGDVGIGRGAVIR 343 (361)
T ss_pred CC-CCCCCceEecCCCE-EE--CCEE--------CCCCEECCCEEEccEECCCCEECCCCEEeeeEEeCCCEECCCCEEe
Confidence 00 01235566665532 11 1123 25666666 7888899999888888744 55668899999999
Q ss_pred cceecCCCCC
Q 012172 460 NKEINGPGDL 469 (469)
Q Consensus 460 ~~~v~~~~~~ 469 (469)
+++|+.+.+|
T Consensus 344 ~~ivg~~~~i 353 (361)
T TIGR02091 344 NAIIDKNVRI 353 (361)
T ss_pred eeEECCCCEE
Confidence 9888877643
|
This enzyme, glucose-1-phosphate adenylyltransferase, is also called ADP-glucose pyrophosphorylase. The plant form is an alpha2,beta2 heterodimer, allosterically regulated in plants. Both subunits are homologous and included in this model. In bacteria, both homomeric forms of GlgC and more active heterodimers of GlgC and GlgD have been described. This model describes the GlgC subunit only. This enzyme appears in variants of glycogen synthesis pathways that use ADP-glucose, rather than UDP-glucose as in animals. |
| >PLN02917 CMP-KDO synthetase | Back alignment and domain information |
|---|
Probab=99.69 E-value=1.5e-15 Score=152.40 Aligned_cols=229 Identities=10% Similarity=0.032 Sum_probs=154.9
Q ss_pred cceeEEEEcCCCCCcCCCCCCccccccCCCCchHHHHHHHHHHhhhhcCCcccEEEecCCCChHHHHHHHHHhcCCCCce
Q 012172 78 DKLVVLKLNGGLGTTMGCTGPKSVIEVRNGLTFLDLIVIQIENLNAKYGCNVPLLLMNSFNTHDDTSKIIEKYSKSNVEI 157 (469)
Q Consensus 78 ~k~avviLAGG~GTRmg~~~PK~l~~v~~gks~L~~~~~~i~~l~~~~~~~iplviMtS~~t~e~t~~~~~~~~g~~~~i 157 (469)
.++.+||+|+|.++||+ +|.|+++ .|+||++|+++++...... +. +|+ +. ..+++.+++.++ .+
T Consensus 46 ~~i~aIIpA~G~SsR~~---~K~L~~i-~GkPLL~~vi~~a~~~~~~---~~-VVV--~~-~~e~I~~~~~~~-----~v 109 (293)
T PLN02917 46 SRVVGIIPARFASSRFE---GKPLVHI-LGKPMIQRTWERAKLATTL---DH-IVV--AT-DDERIAECCRGF-----GA 109 (293)
T ss_pred CcEEEEEecCCCCCCCC---CCCeeeE-CCEEHHHHHHHHHHcCCCC---CE-EEE--EC-ChHHHHHHHHHc-----CC
Confidence 48899999999999996 6999999 8999999999999876421 22 444 33 467787777643 23
Q ss_pred EEEEecCcceecCCCCcccCCCCCCCCcccccCCCcccchhccccchHHHHHHcCCcEEEEEeCcc-ccccccH-HHHHH
Q 012172 158 HTFNQSQYPRLCADDFVPLPCKGKTDKDGWYPPGHGDVFPSLMNSGKLDALISQGKEYVFAANSDN-LGAIVDL-KILNH 235 (469)
Q Consensus 158 ~~f~Q~~~P~l~~~~~~~~~~~~~~~~~~~~P~GhGd~~~~L~~sg~L~~l~~~G~~~v~v~n~DN-L~~~~dp-~~Lg~ 235 (469)
.++.|.. +.+.|+|++..++ +.+ +...+++++.++|. |....+. .++..
T Consensus 110 ~vi~~~~----------------------~~~~GT~~~~~a~------~~l-~~~~d~Vlil~gD~PlI~~~tI~~li~~ 160 (293)
T PLN02917 110 DVIMTSE----------------------SCRNGTERCNEAL------KKL-EKKYDIVVNIQGDEPLIEPEIIDGVVKA 160 (293)
T ss_pred EEEeCCc----------------------ccCCchHHHHHHH------Hhc-cCCCCEEEEecCCcCCCCHHHHHHHHHH
Confidence 3333321 1256788775432 222 22357999999999 8876553 23333
Q ss_pred HHHcCCcceE--EE-eeeccCCCcceEEE--Ee-CCe-e----E-EEEeccCChhhhhhccccccccEEEEEeEEEeHHH
Q 012172 236 LIQNKNEYCM--EV-TPKTLADVKGGTLI--SY-EGK-V----Q-LLEIAQVPDEHVNEFKSIEKFKIFNTNNLWVNLKA 303 (469)
Q Consensus 236 ~~~~~~~~~~--~v-~~k~~~~~~~G~iv--~~-~g~-~----~-ivEy~~~~~e~~~~~~~~~~~~~~Nt~~~~~~l~~ 303 (469)
+. .+.++.+ .+ .....++..||++. ++ +|+ + . |+|++|+++++ +...+.|+|+|+|+.++
T Consensus 161 ~~-~~~~~iv~t~~~~~~~~~~~~ygrv~vv~~~~g~alyfsr~~Ipe~kd~~~~~-------~~i~~~n~Giy~f~~~~ 232 (293)
T PLN02917 161 LQ-AAPDAVFSTAVTSLKPEDASDPNRVKCVVDNQGYAIYFSRGLIPYNKSGKVNP-------QFPYLLHLGIQSYDAKF 232 (293)
T ss_pred HH-hcCCceEEEEeeecCHHHhcCCCceEEEECCCCeEEEeecCcCCcCCCccccc-------ccceEEEEEEEEeCHHH
Confidence 32 3333322 22 22556778899884 44 576 3 3 55888877665 66788999999999999
Q ss_pred HHHHHHhcccccccccCCCcCCCcceehhHHHhhhHhhhcccceeEeecCccccccCCchhHHHHHHHHH
Q 012172 304 IKRLVEADALKMEIIPNPKEVDGIKVLQLETAAGAAIRFFDHAIGCNVHRSRFLPVKATSDLLLVQSDLY 373 (469)
Q Consensus 304 L~~~l~~~~~~lp~~~n~K~~~g~~~iqle~~~~d~~~~~~~~~~v~v~r~eF~pVKn~~dL~~~~~~~~ 373 (469)
|. .+.+ +.+.+ .+..+.||... +++.-.++.++.++ +++.+|||+.||+.+|+.++
T Consensus 233 L~-~l~~-------l~~~n---~e~e~yLtdl~--~le~G~~i~~~~~~-~~~~GVnt~~dL~~ae~~~~ 288 (293)
T PLN02917 233 LK-IYPE-------LPPTP---LQLEEDLEQLK--VLENGYKMKVIKVD-HEAHGVDTPEDVEKIEALMR 288 (293)
T ss_pred HH-HHHc-------CCCCc---ccchhccHHHH--HHhCCCceEEEEeC-CCCCCCCCHHHHHHHHHHHH
Confidence 99 6655 65655 33455556665 45554456566665 58999999999999999875
|
|
| >KOG1322 consensus GDP-mannose pyrophosphorylase/mannose-1-phosphate guanylyltransferase [Cell wall/membrane/envelope biogenesis] | Back alignment and domain information |
|---|
Probab=99.68 E-value=4.8e-15 Score=146.23 Aligned_cols=187 Identities=17% Similarity=0.234 Sum_probs=136.1
Q ss_pred cceeEEEEcCCCCCcCC---CCCCccccccCCCCchHHHHHHHHHHhhhhcCCcccEEEecCCCChHHHHHHHHHhcC-C
Q 012172 78 DKLVVLKLNGGLGTTMG---CTGPKSVIEVRNGLTFLDLIVIQIENLNAKYGCNVPLLLMNSFNTHDDTSKIIEKYSK-S 153 (469)
Q Consensus 78 ~k~avviLAGG~GTRmg---~~~PK~l~~v~~gks~L~~~~~~i~~l~~~~~~~iplviMtS~~t~e~t~~~~~~~~g-~ 153 (469)
+.++.+||-||-||||. .+.||++.|+ ++++|++|+++.+...+- -.+|+.|+++..+..+++.+.|.. .
T Consensus 8 ~~vkaiILvGG~GTRLrPLT~t~pKPlVpf-gn~pmI~hqieal~nsGi-----~~I~la~~y~s~sl~~~~~k~y~~~l 81 (371)
T KOG1322|consen 8 QSVKAIILVGGYGTRLRPLTLTRPKPLVPF-GNKPMILHQIEALINSGI-----TKIVLATQYNSESLNRHLSKAYGKEL 81 (371)
T ss_pred cceeEEEEecCCCceeeceeccCCCccccc-CcchhhHHHHHHHHhCCC-----cEEEEEEecCcHHHHHHHHHHhhhcc
Confidence 57899999999999997 5889999999 699999999999887652 256677788444455555566642 4
Q ss_pred CCceEEEEecCcceecCCCCcccCCCCCCCCcccccCCCcccchhccccchHHHHHHcCCc-EEEEEeCccccccccHHH
Q 012172 154 NVEIHTFNQSQYPRLCADDFVPLPCKGKTDKDGWYPPGHGDVFPSLMNSGKLDALISQGKE-YVFAANSDNLGAIVDLKI 232 (469)
Q Consensus 154 ~~~i~~f~Q~~~P~l~~~~~~~~~~~~~~~~~~~~P~GhGd~~~~L~~sg~L~~l~~~G~~-~v~v~n~DNL~~~~dp~~ 232 (469)
+..|.+-.|.. |.|+.|...+.. +.+...-+ .+||+|+|-+++..--.|
T Consensus 82 gVei~~s~ete------------------------plgtaGpl~laR------~~L~~~~~~~ffVLnsDvi~~~p~~~~ 131 (371)
T KOG1322|consen 82 GVEILASTETE------------------------PLGTAGPLALAR------DFLWVFEDAPFFVLNSDVICRMPYKEM 131 (371)
T ss_pred ceEEEEEeccC------------------------CCcccchHHHHH------HHhhhcCCCcEEEecCCeeecCCHHHH
Confidence 55666555541 677777754333 22322223 799999999999866789
Q ss_pred HHHHHHcCCcceEEEeeeccCCCcceEEEEeCCeeEEEEeccCChhhhhhccccccccEEEEEeEEEeHHHHHHHHH
Q 012172 233 LNHLIQNKNEYCMEVTPKTLADVKGGTLISYEGKVQLLEIAQVPDEHVNEFKSIEKFKIFNTNNLWVNLKAIKRLVE 309 (469)
Q Consensus 233 Lg~~~~~~~~~~~~v~~k~~~~~~~G~iv~~~g~~~ivEy~~~~~e~~~~~~~~~~~~~~Nt~~~~~~l~~L~~~l~ 309 (469)
+.+|.++++|..+.|++-.. +.+||+++.+.+.=+|....+=|++- .-.-.|+|+|+|+.+.|.+++.
T Consensus 132 vqfH~~~gae~TI~~t~vde-pSkyGvv~~d~~~grV~~F~EKPkd~--------vsnkinaGiYi~~~~vL~ri~~ 199 (371)
T KOG1322|consen 132 VQFHRAHGAEITIVVTKVDE-PSKYGVVVIDEDTGRVIRFVEKPKDL--------VSNKINAGIYILNPEVLDRILL 199 (371)
T ss_pred HHHHHhcCCceEEEEEeccC-ccccceEEEecCCCceeEehhCchhh--------hhccccceEEEECHHHHhHhhh
Confidence 99999999999988877655 88999887754333344444444422 2234689999999999999874
|
|
| >PLN02241 glucose-1-phosphate adenylyltransferase | Back alignment and domain information |
|---|
Probab=99.66 E-value=2.3e-14 Score=151.66 Aligned_cols=262 Identities=12% Similarity=0.148 Sum_probs=149.0
Q ss_pred cceeEEEEcCCCCCcCC---CCCCccccccCCCC-chHHHHHHHHHHhhhhcCCcccEEEecCCCChHHHHHHHHHhcCC
Q 012172 78 DKLVVLKLNGGLGTTMG---CTGPKSVIEVRNGL-TFLDLIVIQIENLNAKYGCNVPLLLMNSFNTHDDTSKIIEKYSKS 153 (469)
Q Consensus 78 ~k~avviLAGG~GTRmg---~~~PK~l~~v~~gk-s~L~~~~~~i~~l~~~~~~~iplviMtS~~t~e~t~~~~~~~~g~ 153 (469)
+++.+||||||.||||. .+.||+|+|+ .|+ |+++++++.+...+-+ + +++.+++ ..+.+.++|++....
T Consensus 2 ~~~~aIIlA~G~gtRl~PlT~~~PK~llpv-~g~~plId~~L~~l~~~Gi~---~--i~iv~~~-~~~~i~~~l~~~~~~ 74 (436)
T PLN02241 2 KSVAAIILGGGAGTRLFPLTKRRAKPAVPI-GGNYRLIDIPMSNCINSGIN---K--IYVLTQF-NSASLNRHLSRAYNF 74 (436)
T ss_pred CceEEEEEeCCCCCcchhhhcCCcccceEe-CCcceEehHHHHHHHhCCCC---E--EEEEecc-CHHHHHHHHhccCCC
Confidence 46889999999999998 5889999999 876 9999999999876533 2 3444455 778888998752110
Q ss_pred CCceEEEEecCcceecCCCCcccCCCCCCCCcccccCCCcccchhccccchHHHHHHcCCcEEEEEeCccccccccH-HH
Q 012172 154 NVEIHTFNQSQYPRLCADDFVPLPCKGKTDKDGWYPPGHGDVFPSLMNSGKLDALISQGKEYVFAANSDNLGAIVDL-KI 232 (469)
Q Consensus 154 ~~~i~~f~Q~~~P~l~~~~~~~~~~~~~~~~~~~~P~GhGd~~~~L~~sg~L~~l~~~G~~~v~v~n~DNL~~~~dp-~~ 232 (469)
+.... +.++ .+.+..+.........|.|+||++..... .+++...++.++++|.++|++... |. .+
T Consensus 75 ~~~~~-~~~~---------~~~i~~~~q~~~~~~~~lGt~~al~~~~~--~~~~~~~~~~~~~lv~~gD~v~~~-dl~~l 141 (436)
T PLN02241 75 GNGGN-FGDG---------FVEVLAATQTPGEKGWFQGTADAVRQFLW--LFEDAKNKNVEEVLILSGDHLYRM-DYMDF 141 (436)
T ss_pred CCCcc-cCCC---------CEEEcCCcccCCCCccccCcHHHHHHHHH--HHHhcccCCCCEEEEecCCeEEcc-CHHHH
Confidence 00000 0000 00000000000011248999998654321 111111112479999999997654 53 66
Q ss_pred HHHHHHcCCcceEEEeeec-cCCCcceEEEEe-CCee-EEEEeccCChhhhhh-----c-----cccccccEEEEEeEEE
Q 012172 233 LNHLIQNKNEYCMEVTPKT-LADVKGGTLISY-EGKV-QLLEIAQVPDEHVNE-----F-----KSIEKFKIFNTNNLWV 299 (469)
Q Consensus 233 Lg~~~~~~~~~~~~v~~k~-~~~~~~G~iv~~-~g~~-~ivEy~~~~~e~~~~-----~-----~~~~~~~~~Nt~~~~~ 299 (469)
+.++.++++++++.+.+.. ..+..+|++... +|++ .++|..+.+....-+ | .........|+|+|.|
T Consensus 142 l~~h~~~~a~~ti~~~~v~~~~~~~ygvv~~d~~~~v~~~~Ekp~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~GIyi~ 221 (436)
T PLN02241 142 VQKHRESGADITIACLPVDESRASDFGLMKIDDTGRIIEFSEKPKGDELKAMQVDTTVLGLSPEEAKEKPYIASMGIYVF 221 (436)
T ss_pred HHHHHHcCCCEEEEEEecchhhcCcceEEEECCCCCEEEEEECCCCcccccccccccccccccccccccceEEEeEEEEE
Confidence 7777777887766553332 234778988764 4555 456643322100000 0 0001235789999999
Q ss_pred eHHHHHHHHHhcccccccccCCCcCCCcceehhH-HHhhhHhhhcccceeEeecCccccccCCchhHHHHHHHHHH
Q 012172 300 NLKAIKRLVEADALKMEIIPNPKEVDGIKVLQLE-TAAGAAIRFFDHAIGCNVHRSRFLPVKATSDLLLVQSDLYT 374 (469)
Q Consensus 300 ~l~~L~~~l~~~~~~lp~~~n~K~~~g~~~iqle-~~~~d~~~~~~~~~~v~v~r~eF~pVKn~~dL~~~~~~~~~ 374 (469)
+.+.|..++++.. + ..+ .++ -.+..++..-.++.++.++. .+.-|.+..++..+..++..
T Consensus 222 ~~~~l~~ll~~~~---~---~~~--------~~~~dil~~l~~~g~~v~~~~~~g-yw~dIg~~~~y~~a~~~~l~ 282 (436)
T PLN02241 222 KKDVLLKLLRWRF---P---TAN--------DFGSEIIPGAIKEGYNVQAYLFDG-YWEDIGTIKSFYEANLALTK 282 (436)
T ss_pred EHHHHHHHHHhhc---c---ccc--------chhHHHHHHHhhcCCeEEEEeeCC-EEEECCCHHHHHHHHHHHhc
Confidence 9999988876410 0 000 011 11111121112344444432 56778899999888888754
|
|
| >KOG1460 consensus GDP-mannose pyrophosphorylase [Carbohydrate transport and metabolism; Cell wall/membrane/envelope biogenesis; Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=99.65 E-value=7.1e-15 Score=142.98 Aligned_cols=324 Identities=15% Similarity=0.189 Sum_probs=200.3
Q ss_pred ceeEEEEcCC--CCCcCC---CCCCccccccCCCCchHHHHHHHHHHhhhhcCCcccEEEecCCCChHHHHHHHHHhcCC
Q 012172 79 KLVVLKLNGG--LGTTMG---CTGPKSVIEVRNGLTFLDLIVIQIENLNAKYGCNVPLLLMNSFNTHDDTSKIIEKYSKS 153 (469)
Q Consensus 79 k~avviLAGG--~GTRmg---~~~PK~l~~v~~gks~L~~~~~~i~~l~~~~~~~iplviMtS~~t~e~t~~~~~~~~g~ 153 (469)
++..|||-|| +|||.+ ++.||+|+|+ +|.+|++|.+++..++. .+.-+++-+|+..+....|+..-.
T Consensus 2 ~~~AVIlVGGP~kGTRFRPLSf~vPKPLfpi-aG~pmI~Hhi~ac~qi~-----~l~eI~LvGFy~e~~f~~fis~~~-- 73 (407)
T KOG1460|consen 2 KVKAVILVGGPQKGTRFRPLSFNVPKPLFPI-AGVPMIHHHISACKQIS-----GLAEILLVGFYEERVFTDFISAIQ-- 73 (407)
T ss_pred ceEEEEEecCCCCCccccccccCCCCCcccc-CCcchhhhhHHHHhccc-----chhheeEEecccchHHHHHHHHHH--
Confidence 4667888888 799976 6899999999 99999999999998886 233344448988888888887521
Q ss_pred CCceEEEEecCcceecCCCCcccCCCCCCCCcccccCCCcccchhccccchHHHHHHcCCcEEEEEeCccccccccHHHH
Q 012172 154 NVEIHTFNQSQYPRLCADDFVPLPCKGKTDKDGWYPPGHGDVFPSLMNSGKLDALISQGKEYVFAANSDNLGAIVDLKIL 233 (469)
Q Consensus 154 ~~~i~~f~Q~~~P~l~~~~~~~~~~~~~~~~~~~~P~GhGd~~~~L~~sg~L~~l~~~G~~~v~v~n~DNL~~~~dp~~L 233 (469)
..++ +++. +--+.+|+|+||-..-+. ++.++..-+.+|++|.|.-+...-..+|
T Consensus 74 ---------~e~~-------~pvr-----YL~E~~plGtaGgLyhFr-----dqIl~g~ps~vFvlnaDVCcsfPl~~ml 127 (407)
T KOG1460|consen 74 ---------QEFK-------VPVR-----YLREDNPLGTAGGLYHFR-----DQILAGSPSAVFVLNADVCCSFPLQDML 127 (407)
T ss_pred ---------hhcc-------cchh-----hhccCCCCCcccceeehh-----hHHhcCCCceEEEEecceecCCcHHHHH
Confidence 1111 1221 445667999999865554 3555555679999999997666567889
Q ss_pred HHHHHcCCcceEEEeeec-cCCCcceEEEEeCCeeEEEEeccCChhhhhhccccccccEEEEEeEEEeHHHHHHHHH---
Q 012172 234 NHLIQNKNEYCMEVTPKT-LADVKGGTLISYEGKVQLLEIAQVPDEHVNEFKSIEKFKIFNTNNLWVNLKAIKRLVE--- 309 (469)
Q Consensus 234 g~~~~~~~~~~~~v~~k~-~~~~~~G~iv~~~g~~~ivEy~~~~~e~~~~~~~~~~~~~~Nt~~~~~~l~~L~~~l~--- 309 (469)
..+...+..+.|-++.-+ .....+|.++.+-..-+++-|-|=|.--+ -...|+|+|.|+.+.++.+-+
T Consensus 128 ~ahr~~g~~~tll~tkvs~e~asnfG~lV~dP~t~evlHYveKPsTfv--------Sd~InCGvYlF~~eif~~i~~v~~ 199 (407)
T KOG1460|consen 128 EAHRRYGGIGTLLVTKVSREQASNFGCLVEDPSTGEVLHYVEKPSTFV--------SDIINCGVYLFTPEIFNAIAEVYR 199 (407)
T ss_pred HHHhhcCCceEEEEEEecHhHhhccCeeeecCCcCceEEeecCcchhh--------hcccceeEEEecHHHHHHHHHHHH
Confidence 888888888877764432 34566898887533334566666553321 246799999999998765443
Q ss_pred hc------ccccccccCCCcCCC-cceehhHHHhhhHhhhcccceeEeecCccccccCCchhHHHHHHH----HHHhhcC
Q 012172 310 AD------ALKMEIIPNPKEVDG-IKVLQLETAAGAAIRFFDHAIGCNVHRSRFLPVKATSDLLLVQSD----LYTLADG 378 (469)
Q Consensus 310 ~~------~~~lp~~~n~K~~~g-~~~iqle~~~~d~~~~~~~~~~v~v~r~eF~pVKn~~dL~~~~~~----~~~l~~g 378 (469)
+. ..++|.+ .+| .--+.||+-+...+.-.++..+.+.++ -++-+|++--.+.|-+- ++..+.+
T Consensus 200 q~~~~~~~~~~~~~l-----~~g~~d~irLeqDvlspLag~k~lY~y~t~~-fW~QiKtagsal~as~lYLs~yk~t~p~ 273 (407)
T KOG1460|consen 200 QRQDLLEVEKDLPLL-----QPGPADFIRLEQDVLSPLAGSKQLYAYETTD-FWSQIKTAGSALYASRLYLSQYKRTHPA 273 (407)
T ss_pred HHHhhhhhhhccccc-----CCCccceEEeechhhhhhcCCCceEEEeccc-HHHHhccccceeehhhhHHHHHhhcCch
Confidence 21 0122221 113 235778887776555444444444333 25677876443222221 1222334
Q ss_pred ceeecCCccCCCCCeEEECCCcccccccccccccCCcccccCceEEEeeEEECCCcEEeeeEEEEecCC-CceeeCCCCe
Q 012172 379 FVTRNEARKNPANPTIELGPEFKKVGNFLSRFKSIPSIIELDSLKVTGDVWFGANITLKGKVTIAAKSG-EKLEIPDGAV 457 (469)
Q Consensus 379 ~l~~~~~r~~~~~p~V~l~~~~~~~~~~~~~i~~~p~~~~~~~l~v~G~v~fg~~V~i~g~~~I~~~~~-~~~~I~~~s~ 457 (469)
.+-..|....-+.+.|+++|..+ .. ....|.++|.+|.+|+|+.+|.|++++. +.+.|.++++
T Consensus 274 ~Lak~pgt~a~IigdVyIhPsak--------vh--------ptAkiGPNVSIga~vrvg~GvRl~~sIIl~d~ei~enav 337 (407)
T KOG1460|consen 274 RLAKGPGTQAEIIGDVYIHPSAK--------VH--------PTAKIGPNVSIGANVRVGPGVRLRESIILDDAEIEENAV 337 (407)
T ss_pred hhcCCCCCCceEEeeeEEcCcce--------eC--------CccccCCCceecCCceecCCceeeeeeeccCcEeeccce
Confidence 44434322111334577887755 21 3445555666666666666666664432 3366777777
Q ss_pred eecceecCC
Q 012172 458 LENKEINGP 466 (469)
Q Consensus 458 le~~~v~~~ 466 (469)
.=+++|+=+
T Consensus 338 Vl~sIigw~ 346 (407)
T KOG1460|consen 338 VLHSIIGWK 346 (407)
T ss_pred EEeeeeccc
Confidence 777777643
|
|
| >PF00483 NTP_transferase: Nucleotidyl transferase This Prosite entry is only a sub-family of the Pfam entry | Back alignment and domain information |
|---|
Probab=99.62 E-value=1.5e-14 Score=140.56 Aligned_cols=236 Identities=17% Similarity=0.201 Sum_probs=156.8
Q ss_pred EEEEcCCCCCcCC---CCCCccccccCCCC-chHHHHHHHHHHhhhhcCCcccEEEecCCCChHHHHHHHHHhcCCCCce
Q 012172 82 VLKLNGGLGTTMG---CTGPKSVIEVRNGL-TFLDLIVIQIENLNAKYGCNVPLLLMNSFNTHDDTSKIIEKYSKSNVEI 157 (469)
Q Consensus 82 vviLAGG~GTRmg---~~~PK~l~~v~~gk-s~L~~~~~~i~~l~~~~~~~iplviMtS~~t~e~t~~~~~~~~g~~~~i 157 (469)
.||||||.||||+ .+.||+|+|+ .|+ |+++++++++...+-+ ++ ++|. +.+..+.+.+++++......++
T Consensus 2 avIla~G~GtRl~plt~~~pK~ll~i-~g~~pli~~~l~~l~~~g~~---~i-i~V~-~~~~~~~i~~~~~~~~~~~~~i 75 (248)
T PF00483_consen 2 AVILAGGKGTRLRPLTDTIPKPLLPI-GGKYPLIDYVLENLANAGIK---EI-IVVV-NGYKEEQIEEHLGSGYKFGVKI 75 (248)
T ss_dssp EEEEEESCCGGGTTTTTTSSGGGSEE-TTEEEHHHHHHHHHHHTTCS---EE-EEEE-ETTTHHHHHHHHTTSGGGTEEE
T ss_pred EEEECCCCCccCchhhhcccccccee-cCCCcchhhhhhhhcccCCc---eE-EEEE-eecccccccccccccccccccc
Confidence 5789999999998 5789999999 888 9999999999987643 22 3443 4446788888887643222347
Q ss_pred EEEEecCcceecCCCCcccCCCCCCCCcccccCCCcccchhccccchHHHHHHcC-CcEEEEEeCccccccccHHHHHHH
Q 012172 158 HTFNQSQYPRLCADDFVPLPCKGKTDKDGWYPPGHGDVFPSLMNSGKLDALISQG-KEYVFAANSDNLGAIVDLKILNHL 236 (469)
Q Consensus 158 ~~f~Q~~~P~l~~~~~~~~~~~~~~~~~~~~P~GhGd~~~~L~~sg~L~~l~~~G-~~~v~v~n~DNL~~~~dp~~Lg~~ 236 (469)
.+..|.. |.|+|+++..+.. .+.... -++++|+++|++....-..++..+
T Consensus 76 ~~i~~~~------------------------~~Gta~al~~a~~-----~i~~~~~~~~~lv~~gD~i~~~~~~~~l~~~ 126 (248)
T PF00483_consen 76 EYIVQPE------------------------PLGTAGALLQALD-----FIEEEDDDEDFLVLNGDIIFDDDLQDMLEFH 126 (248)
T ss_dssp EEEEESS------------------------SSCHHHHHHHTHH-----HHTTSEE-SEEEEETTEEEESTTHHHHHHHH
T ss_pred eeeeccc------------------------ccchhHHHHHHHH-----HhhhccccceEEEEeccccccchhhhHHHhh
Confidence 7766762 4589888654432 222221 246999999997766225778888
Q ss_pred HHcCCcceEEE-eeeccCCCcceEEEEeC-Cee-EEEEeccCChhhhhhccccccccEEEEEeEEEeHHHHHHHHHhccc
Q 012172 237 IQNKNEYCMEV-TPKTLADVKGGTLISYE-GKV-QLLEIAQVPDEHVNEFKSIEKFKIFNTNNLWVNLKAIKRLVEADAL 313 (469)
Q Consensus 237 ~~~~~~~~~~v-~~k~~~~~~~G~iv~~~-g~~-~ivEy~~~~~e~~~~~~~~~~~~~~Nt~~~~~~l~~L~~~l~~~~~ 313 (469)
.+++.++.+.+ ......+..+|++..++ |++ .++|-.+.+. ...+.|+|+|+|+-+.+..+++.
T Consensus 127 ~~~~~~~~~~~~~~~~~~~~~~g~v~~d~~~~V~~~~EKP~~~~----------~~~~~~~G~Y~~~~~~~~~~~~~--- 193 (248)
T PF00483_consen 127 RESNADGTVTLLVVPVEDPSRYGVVEVDEDGRVIRIVEKPDNPN----------ASNLINTGIYIFKPEIFDFLLEM--- 193 (248)
T ss_dssp HHHSSCESEEEEEEESSGGGGSEEEEEETTSEEEEEEESCSSHS----------HSSEEEEEEEEEETHHHHHHHHH---
T ss_pred hccccccccccccccccccccceeeeeccceeEEEEeccCcccc----------cceeccCceEEEcchHHHHHhhh---
Confidence 88887654433 44456678889877754 777 4777533221 14689999999999998888642
Q ss_pred ccccccCCCcCCCcceehhHHHhhhHhhhcccceeEeecCc-cccccCCchhHHHHHHHHH
Q 012172 314 KMEIIPNPKEVDGIKVLQLETAAGAAIRFFDHAIGCNVHRS-RFLPVKATSDLLLVQSDLY 373 (469)
Q Consensus 314 ~lp~~~n~K~~~g~~~iqle~~~~d~~~~~~~~~~v~v~r~-eF~pVKn~~dL~~~~~~~~ 373 (469)
..+.. .....+..++..+++.-....++..+.. .+..|.+..++..|...+.
T Consensus 194 ----~~~~~----~~~~~l~d~i~~~~~~~~~~~~~~~~~~~~w~dig~~~~~~~a~~~~~ 246 (248)
T PF00483_consen 194 ----IKENA----RGEDFLTDAIPKLLEQGKKVYAFIFEGNAYWIDIGTPEDYLEANMDLL 246 (248)
T ss_dssp ----HHTCT----TSSHHHHHHHHHHHHTTCEEEEEEHSSEE-EEETSSHHHHHHHHHHHH
T ss_pred ----hhccc----hhhhHHHHHHHHHHHcCCceEEEEecCCeEEEECCCHHHHHHHHHHHh
Confidence 11111 1122233455555555444444455555 5999999999999887763
|
; InterPro: IPR005835 Nucleotidyl transferases transfer nucleotides from one compound to another. This domain is found in a number of enzymes that transfer nucleotides onto phosphosugars.; GO: 0016779 nucleotidyltransferase activity, 0009058 biosynthetic process; PDB: 1YP2_C 1YP4_D 1YP3_B 1H5S_D 1H5R_C 1H5T_C 2E3D_B 1JYL_C 1JYK_A 1MP5_C .... |
| >PRK15480 glucose-1-phosphate thymidylyltransferase RfbA; Provisional | Back alignment and domain information |
|---|
Probab=99.58 E-value=2.9e-13 Score=135.96 Aligned_cols=247 Identities=13% Similarity=0.104 Sum_probs=152.8
Q ss_pred ceeEEEEcCCCCCcCCC---CCCccccccCCCCchHHHHHHHHHHhhhhcCCcccEEEecCCCChHHHHHHHHHhcCCCC
Q 012172 79 KLVVLKLNGGLGTTMGC---TGPKSVIEVRNGLTFLDLIVIQIENLNAKYGCNVPLLLMNSFNTHDDTSKIIEKYSKSNV 155 (469)
Q Consensus 79 k~avviLAGG~GTRmg~---~~PK~l~~v~~gks~L~~~~~~i~~l~~~~~~~iplviMtS~~t~e~t~~~~~~~~g~~~ 155 (469)
.+-+||||||.||||+. ..||.|+|| .||||++|.++.+...+-+ .++|.+.+...+.++++|......+.
T Consensus 3 ~~kaIILAgG~GtRL~PlT~~~pK~Llpv-~gkPmI~~~l~~l~~aGi~-----~I~ii~~~~~~~~~~~~l~~g~~~g~ 76 (292)
T PRK15480 3 TRKGIILAGGSGTRLYPVTMAVSKQLLPI-YDKPMIYYPLSTLMLAGIR-----DILIISTPQDTPRFQQLLGDGSQWGL 76 (292)
T ss_pred ceEEEEECCCcccccCcccCCCCceEeEE-CCEEHHHHHHHHHHHCCCC-----EEEEEecCCchHHHHHHHcCccccCc
Confidence 46789999999999986 789999999 9999999999999876422 23334344345566667653111122
Q ss_pred ceEEEEecCcceecCCCCcccCCCCCCCCcccccCCCcccchhccccchHHHHHHcCCcEEEEEeCccccccccH-HHHH
Q 012172 156 EIHTFNQSQYPRLCADDFVPLPCKGKTDKDGWYPPGHGDVFPSLMNSGKLDALISQGKEYVFAANSDNLGAIVDL-KILN 234 (469)
Q Consensus 156 ~i~~f~Q~~~P~l~~~~~~~~~~~~~~~~~~~~P~GhGd~~~~L~~sg~L~~l~~~G~~~v~v~n~DNL~~~~dp-~~Lg 234 (469)
++.+..|. .|.|+|+++.... .++. + +.+++.++||+....|. .++.
T Consensus 77 ~i~y~~q~------------------------~~~Gta~Al~~a~------~~i~-~-~~~~lv~gD~i~~~~~l~~ll~ 124 (292)
T PRK15480 77 NLQYKVQP------------------------SPDGLAQAFIIGE------EFIG-G-DDCALVLGDNIFYGHDLPKLME 124 (292)
T ss_pred eeEEEECC------------------------CCCCHHHHHHHHH------HHhC-C-CCEEEEECCeeeeccCHHHHHH
Confidence 45555554 2789999865322 3332 2 33666789994333353 5666
Q ss_pred HHHHcCCcceEEEeeeccCCCcceEEEEe-CCeeEEEEeccCChhhhhhccccccccEEEEEeEEEeHHHHHHHHHhccc
Q 012172 235 HLIQNKNEYCMEVTPKTLADVKGGTLISY-EGKVQLLEIAQVPDEHVNEFKSIEKFKIFNTNNLWVNLKAIKRLVEADAL 313 (469)
Q Consensus 235 ~~~~~~~~~~~~v~~k~~~~~~~G~iv~~-~g~~~ivEy~~~~~e~~~~~~~~~~~~~~Nt~~~~~~l~~L~~~l~~~~~ 313 (469)
.+..++.++.+-+... .+++.+|++..+ +|++.-+|.+... ....+.|+|.|+++-+.++. +.+
T Consensus 125 ~~~~~~~~~tv~~~~v-~~p~~yGvv~~d~~g~v~~i~EKP~~----------p~s~~a~~GiY~~~~~v~~~-~~~--- 189 (292)
T PRK15480 125 AAVNKESGATVFAYHV-NDPERYGVVEFDQNGTAISLEEKPLQ----------PKSNYAVTGLYFYDNDVVEM-AKN--- 189 (292)
T ss_pred HHHhCCCCeEEEEEEc-CCcccCcEEEECCCCcEEEEEECCCC----------CCCCEEEEEEEEEChHHHHH-Hhh---
Confidence 6666666665544433 566789988764 5776433334211 22357899999999876543 332
Q ss_pred ccccccCCCcCCCcceehhHHHhhhHhhhcccceeEeecCc-cccccCCchhHHHHHHHHHHhh--cCceeecCCcc
Q 012172 314 KMEIIPNPKEVDGIKVLQLETAAGAAIRFFDHAIGCNVHRS-RFLPVKATSDLLLVQSDLYTLA--DGFVTRNEARK 387 (469)
Q Consensus 314 ~lp~~~n~K~~~g~~~iqle~~~~d~~~~~~~~~~v~v~r~-eF~pVKn~~dL~~~~~~~~~l~--~g~l~~~~~r~ 387 (469)
+.. . ..|+ +.+...+...++.- ...+....|. .|.-+-+..+|..|...++.++ .|..+..|+.+
T Consensus 190 ----~~~-~-~~ge--~~itd~~~~~l~~g-~~~~~~~~~g~~W~DiGt~~~l~~a~~~~~~~~~~~g~~~~~~e~~ 257 (292)
T PRK15480 190 ----LKP-S-ARGE--LEITDINRIYMEQG-RLSVAMMGRGYAWLDTGTHQSLIEASNFIATIEERQGLKVSCPEEI 257 (292)
T ss_pred ----cCC-C-CCCe--eEhHHHHHHHHhcC-CeEEEEecCCcEEECCCCHHHHHHHHHHHHHHHHHCCCEEEChHHH
Confidence 211 1 1133 33333333333332 1222223454 6999999999999988887544 47777777643
|
|
| >cd02540 GT2_GlmU_N_bac N-terminal domain of bacterial GlmU | Back alignment and domain information |
|---|
Probab=99.57 E-value=2.8e-13 Score=130.00 Aligned_cols=224 Identities=16% Similarity=0.180 Sum_probs=143.1
Q ss_pred EEEEcCCCCCcCCCCCCccccccCCCCchHHHHHHHHHHhhhhcCCcccEEEecCCCChHHHHHHHHHhcCCCCceEEEE
Q 012172 82 VLKLNGGLGTTMGCTGPKSVIEVRNGLTFLDLIVIQIENLNAKYGCNVPLLLMNSFNTHDDTSKIIEKYSKSNVEIHTFN 161 (469)
Q Consensus 82 vviLAGG~GTRmg~~~PK~l~~v~~gks~L~~~~~~i~~l~~~~~~~iplviMtS~~t~e~t~~~~~~~~g~~~~i~~f~ 161 (469)
+|+||||.||||+...||.|+++ .|+|+++|.++++...+- -.++|.++. .++.+.+++.+ ..+.++.
T Consensus 1 aiIlaaG~g~R~~~~~pK~l~~v-~gkpli~~~i~~l~~~~i-----~~i~iv~~~-~~~~i~~~~~~-----~~~~~~~ 68 (229)
T cd02540 1 AVILAAGKGTRMKSDLPKVLHPL-AGKPMLEHVLDAARALGP-----DRIVVVVGH-GAEQVKKALAN-----PNVEFVL 68 (229)
T ss_pred CEEEeCCCCccCCCCCChhccee-CCccHHHHHHHHHHhCCC-----CeEEEEECC-CHHHHHHHhCC-----CCcEEEE
Confidence 48999999999998889999999 999999999999987642 134444455 46777666643 1344444
Q ss_pred ecCcceecCCCCcccCCCCCCCCcccccCCCcccchhccccchHHHHHHcCCcEEEEEeCcc-ccccccH-HHHHHHHHc
Q 012172 162 QSQYPRLCADDFVPLPCKGKTDKDGWYPPGHGDVFPSLMNSGKLDALISQGKEYVFAANSDN-LGAIVDL-KILNHLIQN 239 (469)
Q Consensus 162 Q~~~P~l~~~~~~~~~~~~~~~~~~~~P~GhGd~~~~L~~sg~L~~l~~~G~~~v~v~n~DN-L~~~~dp-~~Lg~~~~~ 239 (469)
|.. +.|+++...... +.+ +.+.+++++.++|+ +....+. .++..+.+.
T Consensus 69 ~~~------------------------~~g~~~ai~~a~-----~~~-~~~~~~vli~~~D~p~~~~~~i~~l~~~~~~~ 118 (229)
T cd02540 69 QEE------------------------QLGTGHAVKQAL-----PAL-KDFEGDVLVLYGDVPLITPETLQRLLEAHREA 118 (229)
T ss_pred CCC------------------------CCCCHHHHHHHH-----Hhh-ccCCCeEEEEeCCccccCHHHHHHHHHHHHhc
Confidence 421 356666543221 222 22357899999999 5543332 233444444
Q ss_pred CCcceEEEeeeccCCCcceEEEEe-CCee-EEEEeccCChhhhhhccccccccEEEEEeEEEeHHHHHHHHHhccccccc
Q 012172 240 KNEYCMEVTPKTLADVKGGTLISY-EGKV-QLLEIAQVPDEHVNEFKSIEKFKIFNTNNLWVNLKAIKRLVEADALKMEI 317 (469)
Q Consensus 240 ~~~~~~~v~~k~~~~~~~G~iv~~-~g~~-~ivEy~~~~~e~~~~~~~~~~~~~~Nt~~~~~~l~~L~~~l~~~~~~lp~ 317 (469)
+++.++.+.+.. .+..+|.+... +|++ .+.|..+.++.+ ......|+|.++++.+.+.+.++.
T Consensus 119 ~~~~~~~~~~~~-~p~~~~~~~~~~~~~v~~~~ek~~~~~~~-------~~~~~~~~giy~~~~~~~~~~l~~------- 183 (229)
T cd02540 119 GADVTVLTAELE-DPTGYGRIIRDGNGKVLRIVEEKDATEEE-------KAIREVNAGIYAFDAEFLFEALPK------- 183 (229)
T ss_pred CCcEEEEEEEcC-CCCCccEEEEcCCCCEEEEEECCCCChHH-------HhhceEEeEEEEEEHHHHHHHHHH-------
Confidence 566655555443 45678876554 4766 577765544332 123467999999999988777754
Q ss_pred ccCCCcCCCcceehhHHHhhhHhhhcccceeEeec-CccccccCCchhH
Q 012172 318 IPNPKEVDGIKVLQLETAAGAAIRFFDHAIGCNVH-RSRFLPVKATSDL 365 (469)
Q Consensus 318 ~~n~K~~~g~~~iqle~~~~d~~~~~~~~~~v~v~-r~eF~pVKn~~dL 365 (469)
....+ ..+ .+.+..++..+++...++.++.++ -+++.+|+++.||
T Consensus 184 ~~~~~-~~~--~~~~~d~~~~~~~~g~~v~~~~~~~~~~~~~~~~~~~~ 229 (229)
T cd02540 184 LTNNN-AQG--EYYLTDIIALAVADGLKVAAVLADDEEEVLGVNDRVQL 229 (229)
T ss_pred ccccc-CCC--cEEHHHHHHHHHHCCCEEEEEEcCCcceEecCCChHhC
Confidence 22111 112 233566677677655556777776 5799999999875
|
The N-terminal domain of N-Acetylglucosamine-1-phosphate uridyltransferase (GlmU). GlmU is an essential bacterial enzyme with both an acetyltransferase and an uridyltransferase activity which have been mapped to the C-terminal and N-terminal domains, respectively. This family represents the N-terminal uridyltransferase. GlmU performs the last two steps in the synthesis of UDP-N-acetylglucosamine (UDP-GlcNAc), which is an essential precursor in both the peptidoglycan and the lipopolysaccharide metabolic pathways in Gram-positive and Gram-negative bacteria, respectively. |
| >TIGR01105 galF UTP-glucose-1-phosphate uridylyltransferase, non-catalytic GalF subunit | Back alignment and domain information |
|---|
Probab=99.56 E-value=1.2e-13 Score=139.08 Aligned_cols=232 Identities=14% Similarity=0.133 Sum_probs=143.9
Q ss_pred ceeEEEEcCCCCCcCC---CCCCccccccCCCCchHHHHHHHHHHhhhhcCCcccEEEecCCCChHHHHHHHHHhcC---
Q 012172 79 KLVVLKLNGGLGTTMG---CTGPKSVIEVRNGLTFLDLIVIQIENLNAKYGCNVPLLLMNSFNTHDDTSKIIEKYSK--- 152 (469)
Q Consensus 79 k~avviLAGG~GTRmg---~~~PK~l~~v~~gks~L~~~~~~i~~l~~~~~~~iplviMtS~~t~e~t~~~~~~~~g--- 152 (469)
.+.+||||||+||||. ...||+|+|| .|||+++|+++++...+-+ .++|.+++ ..+.+.+||.....
T Consensus 3 ~mkavILAaG~GTRL~PlT~~~PKpLvpV-~gkPiI~~vl~~l~~~Gi~-----~ivivv~~-~~~~i~~~~~~~~~~~~ 75 (297)
T TIGR01105 3 NLKAVIPVAGLGMHMLPATKAIPKEMLPI-VDKPMIQYIVDEIVAAGIK-----EIVLVTHA-SKNAVENHFDTSYELES 75 (297)
T ss_pred ceEEEEECCCCCcccCcccCCCCceeeEE-CCEEHHHHHHHHHHHCCCC-----EEEEEecC-ChHHHHHHHhchHHHHH
Confidence 4678999999999999 4789999999 9999999999999987532 34555565 78889998854210
Q ss_pred -------------------CCCceEEEEecCcceecCCCCcccCCCCCCCCcccccCCCcccchhccccchHHHHHHcCC
Q 012172 153 -------------------SNVEIHTFNQSQYPRLCADDFVPLPCKGKTDKDGWYPPGHGDVFPSLMNSGKLDALISQGK 213 (469)
Q Consensus 153 -------------------~~~~i~~f~Q~~~P~l~~~~~~~~~~~~~~~~~~~~P~GhGd~~~~L~~sg~L~~l~~~G~ 213 (469)
.+.++.+..| ..|.|+||+..... .++ +-
T Consensus 76 ~~~~~~~~~~~~~~~~~~~~~~~i~~~~q------------------------~~~lGtg~Av~~a~------~~l--~~ 123 (297)
T TIGR01105 76 LLEQRVKRQLLAEVQSICPPGVTIMNVRQ------------------------AQPLGLGHSILCAR------PVV--GD 123 (297)
T ss_pred HHHHhcchhhhhhhhhcCCCCceEEEeeC------------------------CCcCchHHHHHHHH------HHh--CC
Confidence 0112333333 34799999854432 223 22
Q ss_pred cEEEEEeCcccccc-------ccH-HHHHHHHHcCCcceEEEeeeccCCCcceEEEEe-----CCee-EEEEeccCCh--
Q 012172 214 EYVFAANSDNLGAI-------VDL-KILNHLIQNKNEYCMEVTPKTLADVKGGTLISY-----EGKV-QLLEIAQVPD-- 277 (469)
Q Consensus 214 ~~v~v~n~DNL~~~-------~dp-~~Lg~~~~~~~~~~~~v~~k~~~~~~~G~iv~~-----~g~~-~ivEy~~~~~-- 277 (469)
+.+++.++|+|... .|. .++.++.++++.. +.+......+..||++..+ +|++ +|+|.-+=|.
T Consensus 124 ~~flvv~gD~l~~~~~~~~~~~~l~~li~~~~~~~~~~-~~~~~~~~~~~~yGvv~~~~~~d~~g~v~~I~~~~EKP~~~ 202 (297)
T TIGR01105 124 NPFVVVLPDIIIDDATADPLRYNLAAMIARFNETGRSQ-VLAKRMPGDLSEYSVIQTKEPLDREGKVSRIVEFIEKPDQP 202 (297)
T ss_pred CCEEEEECCeeccccccccchhHHHHHHHHHHHhCCcE-EEEEEcCCCCccceEEEecccccCCCCeeeEeEEEECCCCc
Confidence 55778889997642 132 4455554455544 3333433457899998862 4665 5666544331
Q ss_pred hhhhhccccccccEEEEEeEEEeHHHHHHHHHhcccccccccCCCcCCCcceehhHHHhhhHhhhcccceeEeecCcccc
Q 012172 278 EHVNEFKSIEKFKIFNTNNLWVNLKAIKRLVEADALKMEIIPNPKEVDGIKVLQLETAAGAAIRFFDHAIGCNVHRSRFL 357 (469)
Q Consensus 278 e~~~~~~~~~~~~~~Nt~~~~~~l~~L~~~l~~~~~~lp~~~n~K~~~g~~~iqle~~~~d~~~~~~~~~~v~v~r~eF~ 357 (469)
+. ....+.|+|+|+|+.+.+. .++. ..+ . +...++|..++..++.- ..+.++.++ ..+.
T Consensus 203 ~~-------~~s~~~~~GiYi~~~~i~~-~l~~-------~~~-~---~~ge~~ltd~i~~l~~~-~~v~~~~~~-g~w~ 261 (297)
T TIGR01105 203 QT-------LDSDLMAVGRYVLSADIWA-ELER-------TEP-G---AWGRIQLTDAIAELAKK-QSVDAMLMT-GDSY 261 (297)
T ss_pred cc-------CCcCEEEEEEEEECHHHHH-HHhc-------CCC-C---CCCeeeHHHHHHHHHhc-CCEEEEEec-cEEE
Confidence 11 2346899999999988665 3333 211 1 11235555555555543 234444442 3577
Q ss_pred ccCCchhHHHHHHH
Q 012172 358 PVKATSDLLLVQSD 371 (469)
Q Consensus 358 pVKn~~dL~~~~~~ 371 (469)
=|-+..++..+.-.
T Consensus 262 DiG~p~~~~~a~~~ 275 (297)
T TIGR01105 262 DCGKKMGYMQAFVK 275 (297)
T ss_pred CCCCHHHHHHHHHH
Confidence 88888888776443
|
GalF is a non-catalytic subunit of the UTP-glucose pyrophosphorylase modulating the enzyme activity to increase the formation of UDP-glucose |
| >TIGR02623 G1P_cyt_trans glucose-1-phosphate cytidylyltransferase | Back alignment and domain information |
|---|
Probab=99.50 E-value=2.5e-12 Score=126.58 Aligned_cols=240 Identities=11% Similarity=0.053 Sum_probs=143.0
Q ss_pred EEEEcCCCCCcCCC---CCCccccccCCCCchHHHHHHHHHHhhhhcCCcccEEEecCCCChHHHHHHHHHhcCCCCceE
Q 012172 82 VLKLNGGLGTTMGC---TGPKSVIEVRNGLTFLDLIVIQIENLNAKYGCNVPLLLMNSFNTHDDTSKIIEKYSKSNVEIH 158 (469)
Q Consensus 82 vviLAGG~GTRmg~---~~PK~l~~v~~gks~L~~~~~~i~~l~~~~~~~iplviMtS~~t~e~t~~~~~~~~g~~~~i~ 158 (469)
+|+||||.||||+. ..||.|+|+ .|+|++++.++.+.+.+-+ .++|.+++ ..+.+.++|.++.....++.
T Consensus 2 avilaaG~gtRl~~~t~~~pK~llpv-~g~pii~~~l~~l~~~gi~-----~i~iv~~~-~~~~i~~~~~~~~~~~~~~~ 74 (254)
T TIGR02623 2 AVILAGGLGTRISEETHLRPKPMVEI-GGKPILWHIMKIYSHHGIN-----DFIICCGY-KGYVIKEYFANYFLHMSDVT 74 (254)
T ss_pred EEEEcCccccccCccccCCCcceeEE-CCEEHHHHHHHHHHHCCCC-----EEEEEcCC-CHHHHHHHHHhhhhcccCee
Confidence 58999999999976 489999999 9999999999999876421 23344454 78888899876432111233
Q ss_pred EEEec-CcceecCCCC-cccCCCCCCCCcccccCCCcccchhccccchHHHHHHcCCcEEEEEeCccccccccHHHHHHH
Q 012172 159 TFNQS-QYPRLCADDF-VPLPCKGKTDKDGWYPPGHGDVFPSLMNSGKLDALISQGKEYVFAANSDNLGAIVDLKILNHL 236 (469)
Q Consensus 159 ~f~Q~-~~P~l~~~~~-~~~~~~~~~~~~~~~P~GhGd~~~~L~~sg~L~~l~~~G~~~v~v~n~DNL~~~~dp~~Lg~~ 236 (469)
+..|. .+........ ..+. ...+..|.|+||++.... ..+ +-++++|.|+|++....--.++.++
T Consensus 75 ~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~gt~~al~~~~------~~i--~~e~flv~~gD~i~~~dl~~~~~~h 141 (254)
T TIGR02623 75 FHMADNTMEVHHKRVEPWRVT-----LVDTGESTQTGGRLKRVR------EYL--DDEAFCFTYGDGVADIDIKALIAFH 141 (254)
T ss_pred EEecccccccccccCCcccee-----eeecCCcCCcHHHHHHHH------Hhc--CCCeEEEEeCCeEecCCHHHHHHHH
Confidence 33332 1111111000 0000 011235789998864332 122 2367889999997654223566777
Q ss_pred HHcCCcceEEEeeeccCCCcceEEEEeCCee-EEEEeccCChhhhhhccccccccEEEEEeEEEeHHHHHHHHHhccccc
Q 012172 237 IQNKNEYCMEVTPKTLADVKGGTLISYEGKV-QLLEIAQVPDEHVNEFKSIEKFKIFNTNNLWVNLKAIKRLVEADALKM 315 (469)
Q Consensus 237 ~~~~~~~~~~v~~k~~~~~~~G~iv~~~g~~-~ivEy~~~~~e~~~~~~~~~~~~~~Nt~~~~~~l~~L~~~l~~~~~~l 315 (469)
.+.+++..+..+ .++..+|++..++|++ .++|. ..+ .....|+|+|.++.+.+ +.++.
T Consensus 142 ~~~~~d~tl~~~---~~~~~yG~v~~d~~~V~~~~Ek-p~~-----------~~~~i~~Giyi~~~~il-~~l~~----- 200 (254)
T TIGR02623 142 RKHGKKATVTAV---QPPGRFGALDLEGEQVTSFQEK-PLG-----------DGGWINGGFFVLNPSVL-DLIDG----- 200 (254)
T ss_pred HHcCCCEEEEEe---cCCCcccEEEECCCeEEEEEeC-CCC-----------CCCeEEEEEEEEcHHHH-hhccc-----
Confidence 777777765443 3457789987766766 46662 211 12468999999998876 44432
Q ss_pred ccccCCCcCCCcceehhHHHhhhHhhhcccceeEeecCccccccCCchhHHHHHHHHHHh
Q 012172 316 EIIPNPKEVDGIKVLQLETAAGAAIRFFDHAIGCNVHRSRFLPVKATSDLLLVQSDLYTL 375 (469)
Q Consensus 316 p~~~n~K~~~g~~~iqle~~~~d~~~~~~~~~~v~v~r~eF~pVKn~~dL~~~~~~~~~l 375 (469)
.+ . . ....++...++.. ++.+++.+ ..+..|.+..++..++..++.-
T Consensus 201 -----~~-~---~--~~~d~i~~l~~~~-~v~~~~~~-g~w~dIgt~~~~~~~~~~~~~~ 247 (254)
T TIGR02623 201 -----DA-T---V--WEQEPLETLAQRG-ELSAYEHS-GFWQPMDTLRDKNYLEELWESG 247 (254)
T ss_pred -----cC-c---h--hhhhHHHHHHhCC-CEEEEeCC-CEEecCCchHHHHHHHHHHHcC
Confidence 01 0 0 0012222233221 23344432 3689999999998888777543
|
Members of this family are the enzyme glucose-1-phosphate cytidylyltransferase, also called CDP-glucose pyrophosphorylase, the product of the rfbF gene. |
| >cd04189 G1P_TT_long G1P_TT_long represents the long form of glucose-1-phosphate thymidylyltransferase | Back alignment and domain information |
|---|
Probab=99.49 E-value=8.6e-12 Score=120.47 Aligned_cols=230 Identities=17% Similarity=0.173 Sum_probs=142.0
Q ss_pred eeEEEEcCCCCCcCC---CCCCccccccCCCCchHHHHHHHHHHhhhhcCCcccEEEecCCCChHHHHHHHHHhcCCCCc
Q 012172 80 LVVLKLNGGLGTTMG---CTGPKSVIEVRNGLTFLDLIVIQIENLNAKYGCNVPLLLMNSFNTHDDTSKIIEKYSKSNVE 156 (469)
Q Consensus 80 ~avviLAGG~GTRmg---~~~PK~l~~v~~gks~L~~~~~~i~~l~~~~~~~iplviMtS~~t~e~t~~~~~~~~g~~~~ 156 (469)
+.+||||||.||||+ ...||.|+|+ .|+|++++.++.+.+.+-+ .+++.+++ ..+.+.++++++...+.+
T Consensus 1 m~avIlAaG~g~Rl~plt~~~pK~l~~i-~g~~li~~~l~~l~~~~~~-----~i~vv~~~-~~~~~~~~~~~~~~~~~~ 73 (236)
T cd04189 1 MKGLILAGGKGTRLRPLTYTRPKQLIPV-AGKPIIQYAIEDLREAGIE-----DIGIVVGP-TGEEIKEALGDGSRFGVR 73 (236)
T ss_pred CeEEEECCCccccccccccCCCceeeEE-CCcchHHHHHHHHHHCCCC-----EEEEEcCC-CHHHHHHHhcchhhcCCe
Confidence 357999999999997 4789999999 9999999999999875322 34555566 778888888653211223
Q ss_pred eEEEEecCcceecCCCCcccCCCCCCCCcccccCCCcccchhccccchHHHHHHcCCcEEEEEeCccccccccHHHHHHH
Q 012172 157 IHTFNQSQYPRLCADDFVPLPCKGKTDKDGWYPPGHGDVFPSLMNSGKLDALISQGKEYVFAANSDNLGAIVDLKILNHL 236 (469)
Q Consensus 157 i~~f~Q~~~P~l~~~~~~~~~~~~~~~~~~~~P~GhGd~~~~L~~sg~L~~l~~~G~~~v~v~n~DNL~~~~dp~~Lg~~ 236 (469)
+.+..|. .|.|+|+.+.... .++. .+.+++.++|++....--.++..+
T Consensus 74 i~~~~~~------------------------~~~g~~~sl~~a~------~~i~--~~~~li~~~D~~~~~~~~~~~~~~ 121 (236)
T cd04189 74 ITYILQE------------------------EPLGLAHAVLAAR------DFLG--DEPFVVYLGDNLIQEGISPLVRDF 121 (236)
T ss_pred EEEEECC------------------------CCCChHHHHHHHH------HhcC--CCCEEEEECCeecCcCHHHHHHHH
Confidence 4443332 2467777643221 1222 245677899996543223455566
Q ss_pred HHcCCcceEEEeeeccCCCcceEEEEeCCee-EEEEeccCChhhhhhccccccccEEEEEeEEEeHHHHHHHHHhccccc
Q 012172 237 IQNKNEYCMEVTPKTLADVKGGTLISYEGKV-QLLEIAQVPDEHVNEFKSIEKFKIFNTNNLWVNLKAIKRLVEADALKM 315 (469)
Q Consensus 237 ~~~~~~~~~~v~~k~~~~~~~G~iv~~~g~~-~ivEy~~~~~e~~~~~~~~~~~~~~Nt~~~~~~l~~L~~~l~~~~~~l 315 (469)
...+.++++.+.+. .++..+|++..++|++ .++|. |.. ......|+|+++|+.+.++.+ ..
T Consensus 122 ~~~~~~~~~~~~~~-~~~~~~g~~~~d~~~v~~~~ek---~~~--------~~~~~~~~Giy~~~~~~~~~l-~~----- 183 (236)
T cd04189 122 LEEDADASILLAEV-EDPRRFGVAVVDDGRIVRLVEK---PKE--------PPSNLALVGVYAFTPAIFDAI-SR----- 183 (236)
T ss_pred HhcCCceEEEEEEC-CCcccceEEEEcCCeEEEEEEC---CCC--------CCCCEEEEEEEEeCHHHHHHH-Hh-----
Confidence 66677776666543 3456788776666644 34443 211 113568999999998777543 22
Q ss_pred ccccCCCcCCCcceehhHHHhhhHhhhcccceeEeecCccccccCCchhHHHHHHHHH
Q 012172 316 EIIPNPKEVDGIKVLQLETAAGAAIRFFDHAIGCNVHRSRFLPVKATSDLLLVQSDLY 373 (469)
Q Consensus 316 p~~~n~K~~~g~~~iqle~~~~d~~~~~~~~~~v~v~r~eF~pVKn~~dL~~~~~~~~ 373 (469)
.. +. ..++ +.++.++..++..-.++.+++++ ..+..|.+..|+..++..+.
T Consensus 184 --~~-~~-~~~~--~~~~d~~~~~i~~g~~v~~~~~~-~~~~~i~t~~dl~~a~~~~l 234 (236)
T cd04189 184 --LK-PS-WRGE--LEITDAIQWLIDRGRRVGYSIVT-GWWKDTGTPEDLLEANRLLL 234 (236)
T ss_pred --cC-CC-CCCe--EEHHHHHHHHHHcCCcEEEEEcC-ceEEeCCCHHHHHHHHHHHH
Confidence 11 11 1133 23345555555443345555554 24799999999998887653
|
This family is the long form of Glucose-1-phosphate thymidylyltransferase. Glucose-1-phosphate thymidylyltransferase catalyses the formation of dTDP-glucose, from dTTP and glucose 1-phosphate. It is the first enzyme in the biosynthesis of dTDP-L-rhamnose, a cell wall constituent and a feedback inhibitor of the enzyme.There are two forms of Glucose-1-phosphate thymidylyltransferase in bacteria and archeae; short form and long form. The long form, which has an extra 50 amino acids c-terminal, is found in many species for which it serves as a sugar-activating enzyme for antibiotic biosynthesis and or other, unknown pathways, and in which dTDP-L-rhamnose is not necessarily produced.The long from enzymes also have a left-handed parallel helix domain at the c-terminus, whereas, th eshort form enzymes do not have this domain. The homotetrameric, feedback inhibited short form is found in |
| >TIGR01207 rmlA glucose-1-phosphate thymidylyltransferase, short form | Back alignment and domain information |
|---|
Probab=99.48 E-value=7.3e-12 Score=125.52 Aligned_cols=242 Identities=12% Similarity=0.085 Sum_probs=149.5
Q ss_pred EEEEcCCCCCcCCC---CCCccccccCCCCchHHHHHHHHHHhhhhcCCcccEEEecCCCChHHHHHHHHHhcCCCCceE
Q 012172 82 VLKLNGGLGTTMGC---TGPKSVIEVRNGLTFLDLIVIQIENLNAKYGCNVPLLLMNSFNTHDDTSKIIEKYSKSNVEIH 158 (469)
Q Consensus 82 vviLAGG~GTRmg~---~~PK~l~~v~~gks~L~~~~~~i~~l~~~~~~~iplviMtS~~t~e~t~~~~~~~~g~~~~i~ 158 (469)
+||||||.||||.. ..||.|+|| .||||+++.++.+...+-+ .++|.+.++..+.++++|......+.++.
T Consensus 2 aIILAgG~GtRL~plT~~~pK~Llpv-~gkPmI~~~L~~l~~aGi~-----~I~iv~~~~~~~~~~~~lg~g~~~g~~i~ 75 (286)
T TIGR01207 2 GIILAGGSGTRLYPITRAVSKQLLPI-YDKPMIYYPLSTLMLAGIR-----DILIISTPQDTPRFQQLLGDGSQWGVNLS 75 (286)
T ss_pred EEEECCCCCccCCcccCCCCceeeEE-CCEEhHHHHHHHHHHCCCC-----EEEEEecCCcHHHHHHHhccccccCceEE
Confidence 58999999999986 789999999 9999999999999876422 34444455455667777753111123455
Q ss_pred EEEecCcceecCCCCcccCCCCCCCCcccccCCCcccchhccccchHHHHHHcCCcEEEEEeCcccccccc-HHHHHHHH
Q 012172 159 TFNQSQYPRLCADDFVPLPCKGKTDKDGWYPPGHGDVFPSLMNSGKLDALISQGKEYVFAANSDNLGAIVD-LKILNHLI 237 (469)
Q Consensus 159 ~f~Q~~~P~l~~~~~~~~~~~~~~~~~~~~P~GhGd~~~~L~~sg~L~~l~~~G~~~v~v~n~DNL~~~~d-p~~Lg~~~ 237 (469)
+..|. .|.|+|+++.... .++. .+.+++.++||+....| ..++..+.
T Consensus 76 ~~~q~------------------------~~~Gta~al~~a~------~~l~--~~~~~li~gD~i~~~~~l~~ll~~~~ 123 (286)
T TIGR01207 76 YAVQP------------------------SPDGLAQAFIIGE------DFIG--GDPSALVLGDNIFYGHDLSDLLKRAA 123 (286)
T ss_pred EEEcc------------------------CCCCHHHHHHHHH------HHhC--CCCEEEEECCEeccccCHHHHHHHHH
Confidence 55553 3689999864432 2332 24456668999333345 35566666
Q ss_pred HcCCcceEEEeeeccCCCcceEEEEe-CCee-EEEEeccCChhhhhhccccccccEEEEEeEEEeHHHHHHHHHhccccc
Q 012172 238 QNKNEYCMEVTPKTLADVKGGTLISY-EGKV-QLLEIAQVPDEHVNEFKSIEKFKIFNTNNLWVNLKAIKRLVEADALKM 315 (469)
Q Consensus 238 ~~~~~~~~~v~~k~~~~~~~G~iv~~-~g~~-~ivEy~~~~~e~~~~~~~~~~~~~~Nt~~~~~~l~~L~~~l~~~~~~l 315 (469)
+.+++..+-+.+. .+++.||++..+ +|++ .++|...- ....+.|+|.|+++.+.+ +++.+
T Consensus 124 ~~~~~~ti~~~~v-~~p~~yGvv~~d~~g~V~~i~EKp~~-----------~~s~~~~~GiYi~~~~i~-~~l~~----- 185 (286)
T TIGR01207 124 ARESGATVFAYQV-SDPERYGVVEFDSNGRAISIEEKPAQ-----------PKSNYAVTGLYFYDNRVV-EIARQ----- 185 (286)
T ss_pred hcCCCcEEEEEEc-cCHHHCceEEECCCCeEEEEEECCCC-----------CCCCEEEEEEEEEchHHH-HHHhh-----
Confidence 6666665544443 456789988764 6776 45553211 123578999999998864 44433
Q ss_pred ccccCCCcCCCcceehhHHHhhhHhhhcccceeEeecCc-cccccCCchhHHHHHHHHHHhhc--CceeecCCc
Q 012172 316 EIIPNPKEVDGIKVLQLETAAGAAIRFFDHAIGCNVHRS-RFLPVKATSDLLLVQSDLYTLAD--GFVTRNEAR 386 (469)
Q Consensus 316 p~~~n~K~~~g~~~iqle~~~~d~~~~~~~~~~v~v~r~-eF~pVKn~~dL~~~~~~~~~l~~--g~l~~~~~r 386 (469)
+.. . ..++. .+...+...++.- ...+....+- .|.=+.+..++..+.+.++.+++ |.....|+.
T Consensus 186 --~~~-~-~~ge~--eitdv~~~~l~~g-~l~v~~~~~g~~W~DiGt~~~l~~A~~~~~~~~~~~~~~~~~~~~ 252 (286)
T TIGR01207 186 --LKP-S-ARGEL--EITDLNRVYLEEG-RLSVELLGRGYAWLDTGTHDSLLEASNFIQTIEKRQGLKVACPEE 252 (286)
T ss_pred --cCC-C-CCCcE--eHHHHHHHHHHcC-CcEEEEecCCCEEEeCCCHHHHHHHHHHHHHHHHhcCCEEecHHH
Confidence 211 1 11332 3334444334331 1222233344 48999999999999888886554 556666653
|
This model describes a tightly conserved but broadly distributed subfamily (here designated as short form) of known and putative bacterial glucose-1-phosphate thymidylyltransferases. It is well characterized in several species as the first of four enzymes involved in the biosynthesis of dTDP-L-rhamnose, a cell wall constituent and a feedback inhibitor of the enzyme. |
| >PRK10122 GalU regulator GalF; Provisional | Back alignment and domain information |
|---|
Probab=99.48 E-value=7.8e-12 Score=125.94 Aligned_cols=236 Identities=14% Similarity=0.130 Sum_probs=143.6
Q ss_pred cceeEEEEcCCCCCcCC---CCCCccccccCCCCchHHHHHHHHHHhhhhcCCcccEEEecCCCChHHHHHHHHHhcC--
Q 012172 78 DKLVVLKLNGGLGTTMG---CTGPKSVIEVRNGLTFLDLIVIQIENLNAKYGCNVPLLLMNSFNTHDDTSKIIEKYSK-- 152 (469)
Q Consensus 78 ~k~avviLAGG~GTRmg---~~~PK~l~~v~~gks~L~~~~~~i~~l~~~~~~~iplviMtS~~t~e~t~~~~~~~~g-- 152 (469)
.++.+||||||+||||+ ...||.|+|| .|||+++++++.+...+-+ .++|.+++ ..+.+.+||.....
T Consensus 2 ~~mkavIlAaG~GtRl~PlT~~~PK~llpi-~gkpiI~~~l~~l~~~Gi~-----~i~iv~~~-~~~~i~~~~~~~~~l~ 74 (297)
T PRK10122 2 TNLKAVIPVAGLGMHMLPATKAIPKEMLPI-VDKPMIQYIVDEIVAAGIK-----EIVLVTHA-SKNAVENHFDTSYELE 74 (297)
T ss_pred CceEEEEECCcCCcccCcccCCCCceeeEE-CCEEHHHHHHHHHHHCCCC-----EEEEEcCC-ChHHHHHHHhcchhHH
Confidence 36789999999999998 4789999999 9999999999999887532 34555555 77888888852110
Q ss_pred --------------------CCCceEEEEecCcceecCCCCcccCCCCCCCCcccccCCCcccchhccccchHHHHHHcC
Q 012172 153 --------------------SNVEIHTFNQSQYPRLCADDFVPLPCKGKTDKDGWYPPGHGDVFPSLMNSGKLDALISQG 212 (469)
Q Consensus 153 --------------------~~~~i~~f~Q~~~P~l~~~~~~~~~~~~~~~~~~~~P~GhGd~~~~L~~sg~L~~l~~~G 212 (469)
.+.++.+..|. .|.|+|+++.... .++ +
T Consensus 75 ~~~~~~~k~~~l~~~~~~~~~~~~i~~~~q~------------------------~~lGtg~al~~a~------~~l--~ 122 (297)
T PRK10122 75 SLLEQRVKRQLLAEVQSICPPGVTIMNVRQG------------------------QPLGLGHSILCAR------PAI--G 122 (297)
T ss_pred HHHhhcchhhhHHhhhhccCCCceEEEeecC------------------------CcCchHHHHHHHH------HHc--C
Confidence 01123333332 3789999864432 222 2
Q ss_pred CcEEEEEeCcccccc-------ccH-HHHHHHHHcCCcceEEEeeeccCCCcceEEEEe-----CCee-EEEEeccCChh
Q 012172 213 KEYVFAANSDNLGAI-------VDL-KILNHLIQNKNEYCMEVTPKTLADVKGGTLISY-----EGKV-QLLEIAQVPDE 278 (469)
Q Consensus 213 ~~~v~v~n~DNL~~~-------~dp-~~Lg~~~~~~~~~~~~v~~k~~~~~~~G~iv~~-----~g~~-~ivEy~~~~~e 278 (469)
-+..+|.++|++... .|. .++.++.+.+++. +.+......+..||++... +|.+ +|++..+=|..
T Consensus 123 ~~~fvvi~gD~l~~~~~~~~~~~dl~~li~~h~~~~~~~-~~~~~~~~~~~~yGvv~~d~~~~~~g~v~~I~~~~EKp~~ 201 (297)
T PRK10122 123 DNPFVVVLPDVVIDDASADPLRYNLAAMIARFNETGRSQ-VLAKRMPGDLSEYSVIQTKEPLDREGKVSRIVEFIEKPDQ 201 (297)
T ss_pred CCCEEEEECCeeccCccccccchhHHHHHHHHHHhCCcE-EEEEECCCCCCCceEEEecCcccCCCCeeeEEEEEECCCC
Confidence 244667779997642 232 4566666666663 3333333467789988763 4544 45554433321
Q ss_pred hhhhccccccccEEEEEeEEEeHHHHHHHHHhcccccccccCCCcCCCcceehhHHHhhhHhhhcccceeEeecCccccc
Q 012172 279 HVNEFKSIEKFKIFNTNNLWVNLKAIKRLVEADALKMEIIPNPKEVDGIKVLQLETAAGAAIRFFDHAIGCNVHRSRFLP 358 (469)
Q Consensus 279 ~~~~~~~~~~~~~~Nt~~~~~~l~~L~~~l~~~~~~lp~~~n~K~~~g~~~iqle~~~~d~~~~~~~~~~v~v~r~eF~p 358 (469)
... ......|+|+|.|+.+.+..+.+ ..+. +...++|..++...+.- .++.++.++ ..|.-
T Consensus 202 ~~~-----~~s~~~~~GiYi~~~~i~~~l~~--------~~~~----~~~e~~ltd~i~~l~~~-~~v~~~~~~-G~w~D 262 (297)
T PRK10122 202 PQT-----LDSDLMAVGRYVLSADIWPELER--------TEPG----AWGRIQLTDAIAELAKK-QSVDAMLMT-GDSYD 262 (297)
T ss_pred ccc-----CCccEEEEEEEEECHHHHHHHHh--------CCCC----CCCeeeHHHHHHHHHhC-CCEEEEEeC-CEEEc
Confidence 100 12357899999999887665422 1110 11234455555444433 234444433 35788
Q ss_pred cCCchhHHHHHHHH
Q 012172 359 VKATSDLLLVQSDL 372 (469)
Q Consensus 359 VKn~~dL~~~~~~~ 372 (469)
|=+..++..+.-.+
T Consensus 263 iG~p~~~~~a~~~~ 276 (297)
T PRK10122 263 CGKKMGYMQAFVKY 276 (297)
T ss_pred CCCHHHHHHHHHHH
Confidence 88888887776554
|
|
| >cd02538 G1P_TT_short G1P_TT_short is the short form of glucose-1-phosphate thymidylyltransferase | Back alignment and domain information |
|---|
Probab=99.47 E-value=9.2e-12 Score=120.97 Aligned_cols=231 Identities=16% Similarity=0.090 Sum_probs=139.8
Q ss_pred eEEEEcCCCCCcCCC---CCCccccccCCCCchHHHHHHHHHHhhhhcCCcccEEEecCCCChHHHHHHHHHhcCCCCce
Q 012172 81 VVLKLNGGLGTTMGC---TGPKSVIEVRNGLTFLDLIVIQIENLNAKYGCNVPLLLMNSFNTHDDTSKIIEKYSKSNVEI 157 (469)
Q Consensus 81 avviLAGG~GTRmg~---~~PK~l~~v~~gks~L~~~~~~i~~l~~~~~~~iplviMtS~~t~e~t~~~~~~~~g~~~~i 157 (469)
.+||||||.||||+. ..||.|+|+ .|+|++++.++.+...+-+ .+++.++....+.+.+++......+.++
T Consensus 2 ~~iIlAaG~gtRl~plt~~~pK~llpv-~~~pli~~~l~~l~~~gi~-----~i~vv~~~~~~~~~~~~l~~~~~~~~~i 75 (240)
T cd02538 2 KGIILAGGSGTRLYPLTKVVSKQLLPV-YDKPMIYYPLSTLMLAGIR-----EILIISTPEDLPLFKELLGDGSDLGIRI 75 (240)
T ss_pred eEEEEcCcCcccCCccccCCCceeeEE-CCEEhHHHHHHHHHHCCCC-----EEEEEeCcchHHHHHHHHhcccccCceE
Confidence 479999999999986 789999999 8999999999999875422 3445455544567777775421111223
Q ss_pred EEEEecCcceecCCCCcccCCCCCCCCcccccCCCcccchhccccchHHHHHHcCCcEEEEEeCccccccccH-HHHHHH
Q 012172 158 HTFNQSQYPRLCADDFVPLPCKGKTDKDGWYPPGHGDVFPSLMNSGKLDALISQGKEYVFAANSDNLGAIVDL-KILNHL 236 (469)
Q Consensus 158 ~~f~Q~~~P~l~~~~~~~~~~~~~~~~~~~~P~GhGd~~~~L~~sg~L~~l~~~G~~~v~v~n~DNL~~~~dp-~~Lg~~ 236 (469)
.+..| ..|.|+|+.+.... .++. -+.++|.++|++....|. .++-++
T Consensus 76 ~~~~~------------------------~~~~G~~~al~~a~------~~~~--~~~~lv~~gD~~~~~~~~~~~~~~~ 123 (240)
T cd02538 76 TYAVQ------------------------PKPGGLAQAFIIGE------EFIG--DDPVCLILGDNIFYGQGLSPILQRA 123 (240)
T ss_pred EEeeC------------------------CCCCCHHHHHHHHH------HhcC--CCCEEEEECCEEEccHHHHHHHHHH
Confidence 32222 12578887753222 1222 256788899994332332 455556
Q ss_pred HHcCCcceEEEeeeccCCCcceEEEEe-CCee-EEEEeccCChhhhhhccccccccEEEEEeEEEeHHHHHHHHHhcccc
Q 012172 237 IQNKNEYCMEVTPKTLADVKGGTLISY-EGKV-QLLEIAQVPDEHVNEFKSIEKFKIFNTNNLWVNLKAIKRLVEADALK 314 (469)
Q Consensus 237 ~~~~~~~~~~v~~k~~~~~~~G~iv~~-~g~~-~ivEy~~~~~e~~~~~~~~~~~~~~Nt~~~~~~l~~L~~~l~~~~~~ 314 (469)
.+++.++.+.+.+. .++..+|++..+ +|++ .++|- |.. ......|+|+|+|+.+.+ +.++.
T Consensus 124 ~~~~~~~~~~~~~~-~~~~~~g~v~~d~~g~v~~~~ek---p~~--------~~~~~~~~Giyi~~~~~l-~~l~~---- 186 (240)
T cd02538 124 AAQKEGATVFGYEV-NDPERYGVVEFDENGRVLSIEEK---PKK--------PKSNYAVTGLYFYDNDVF-EIAKQ---- 186 (240)
T ss_pred HhcCCCcEEEEEEC-CchhcCceEEecCCCcEEEEEEC---CCC--------CCCCeEEEEEEEECHHHH-HHHHh----
Confidence 55667766554433 445678987664 5666 35553 211 123468999999999876 45543
Q ss_pred cccccCCCcCCCcceehhHHHhhhHhhhcccceeEeecC-ccccccCCchhHHHHHHHHHH
Q 012172 315 MEIIPNPKEVDGIKVLQLETAAGAAIRFFDHAIGCNVHR-SRFLPVKATSDLLLVQSDLYT 374 (469)
Q Consensus 315 lp~~~n~K~~~g~~~iqle~~~~d~~~~~~~~~~v~v~r-~eF~pVKn~~dL~~~~~~~~~ 374 (469)
..+.. .++ +.+..++..++..- ...+..++. ..+.-|.+..++..+.+.++.
T Consensus 187 ---~~~~~--~~~--~~l~d~~~~l~~~g-~~~~~~~~~~g~w~digt~~~~~~a~~~~~~ 239 (240)
T cd02538 187 ---LKPSA--RGE--LEITDVNNEYLEKG-KLSVELLGRGFAWLDTGTHESLLEASNFVQT 239 (240)
T ss_pred ---cCCCC--CCe--EEhHHHHHHHHHhC-CeEEEEeCCCcEEEeCCCHHHHHHHHHHHhh
Confidence 21111 122 23333444333332 233344454 478999999999998887653
|
This family is the short form of glucose-1-phosphate thymidylyltransferase. Glucose-1-phosphate thymidylyltransferase catalyses the formation of dTDP-glucose, from dTTP and glucose 1-phosphate. It is the first enzyme in the biosynthesis of dTDP-L-rhamnose, a cell wall constituent and a feedback inhibitor of the enzyme.There are two forms of Glucose-1-phosphate thymidylyltransferase in bacteria and archeae; short form and long form. The homotetrameric, feedback inhibited short form is found in numerous bacterial species that produce dTDP-L-rhamnose. The long form, which has an extra 50 amino acids c-terminal, is found in many species for which it serves as a sugar-activating enzyme for antibiotic biosynthesis and or other, unknown pathways, and in which dTDP-L-rhamnose is not necessarily produced. |
| >cd06426 NTP_transferase_like_2 NTP_trnasferase_like_2 is a member of the nucleotidyl transferase family | Back alignment and domain information |
|---|
Probab=99.47 E-value=5.7e-12 Score=120.29 Aligned_cols=215 Identities=16% Similarity=0.197 Sum_probs=134.0
Q ss_pred EEEEcCCCCCcCC---CCCCccccccCCCCchHHHHHHHHHHhhhhcCCcccEEEecCCCChHHHHHHHHHhcCCCCceE
Q 012172 82 VLKLNGGLGTTMG---CTGPKSVIEVRNGLTFLDLIVIQIENLNAKYGCNVPLLLMNSFNTHDDTSKIIEKYSKSNVEIH 158 (469)
Q Consensus 82 vviLAGG~GTRmg---~~~PK~l~~v~~gks~L~~~~~~i~~l~~~~~~~iplviMtS~~t~e~t~~~~~~~~g~~~~i~ 158 (469)
+|+||||.||||+ ...||.|+|+ .|+|++++.++++...+-+ .+++.+++ ..+.+++++.+....+.++.
T Consensus 1 ~vIlaaG~g~R~~plt~~~pK~ll~~-~g~pli~~~l~~l~~~~~~-----~iivv~~~-~~~~i~~~~~~~~~~~~~i~ 73 (220)
T cd06426 1 VVIMAGGKGTRLRPLTENTPKPMLKV-GGKPILETIIDRFIAQGFR-----NFYISVNY-LAEMIEDYFGDGSKFGVNIS 73 (220)
T ss_pred CEEecCCCccccCcccCCCCCccCeE-CCcchHHHHHHHHHHCCCc-----EEEEECcc-CHHHHHHHHCCccccCccEE
Confidence 5899999999997 3689999999 9999999999999886422 33444455 56677777754211112333
Q ss_pred EEEecCcceecCCCCcccCCCCCCCCcccccCCCcccchhccccchHHHHHHcCCcEEEEEeCccccccccHHHHHHHHH
Q 012172 159 TFNQSQYPRLCADDFVPLPCKGKTDKDGWYPPGHGDVFPSLMNSGKLDALISQGKEYVFAANSDNLGAIVDLKILNHLIQ 238 (469)
Q Consensus 159 ~f~Q~~~P~l~~~~~~~~~~~~~~~~~~~~P~GhGd~~~~L~~sg~L~~l~~~G~~~v~v~n~DNL~~~~dp~~Lg~~~~ 238 (469)
+..|. .|.|+|+.+..+. +...+.++|+++|++....--.++..+..
T Consensus 74 ~~~~~------------------------~~~g~~~~l~~~~---------~~~~~~~lv~~~D~i~~~~~~~l~~~~~~ 120 (220)
T cd06426 74 YVRED------------------------KPLGTAGALSLLP---------EKPTDPFLVMNGDILTNLNYEHLLDFHKE 120 (220)
T ss_pred EEECC------------------------CCCcchHHHHHHH---------hhCCCCEEEEcCCEeeccCHHHHHHHHHh
Confidence 33322 2567777753222 22247899999998554322345666666
Q ss_pred cCCcceEEEeeeccCCCcceEEEEeCCee-EEEEeccCChhhhhhccccccccEEEEEeEEEeHHHHHHHHHhccccccc
Q 012172 239 NKNEYCMEVTPKTLADVKGGTLISYEGKV-QLLEIAQVPDEHVNEFKSIEKFKIFNTNNLWVNLKAIKRLVEADALKMEI 317 (469)
Q Consensus 239 ~~~~~~~~v~~k~~~~~~~G~iv~~~g~~-~ivEy~~~~~e~~~~~~~~~~~~~~Nt~~~~~~l~~L~~~l~~~~~~lp~ 317 (469)
.+.+.++.+.. ..+...+|.+..++|++ .+.|. + ......|+|+++|+.+.+..+ .
T Consensus 121 ~~~~~~~~~~~-~~~~~~~g~~~~d~~~v~~~~ek---~----------~~~~~~~~Giy~~~~~~~~~i-~-------- 177 (220)
T cd06426 121 NNADATVCVRE-YEVQVPYGVVETEGGRITSIEEK---P----------THSFLVNAGIYVLEPEVLDLI-P-------- 177 (220)
T ss_pred cCCCEEEEEEE-cCCCCcceEEEECCCEEEEEEEC---C----------CCCCeEEEEEEEEcHHHHhhc-C--------
Confidence 66666655544 34556678765555655 34442 1 112467999999999876532 1
Q ss_pred ccCCCcCCCcceehhHHHhhhHhhhcccceeEeecCccccccCCchhHHHH
Q 012172 318 IPNPKEVDGIKVLQLETAAGAAIRFFDHAIGCNVHRSRFLPVKATSDLLLV 368 (469)
Q Consensus 318 ~~n~K~~~g~~~iqle~~~~d~~~~~~~~~~v~v~r~eF~pVKn~~dL~~~ 368 (469)
+ ++ .+.+..++..++..-.++.+++.+ ..+..|.+.+||..|
T Consensus 178 --~-----~~-~~~l~~~~~~~i~~~~~i~~~~~~-~~w~~igt~~dl~~a 219 (220)
T cd06426 178 --K-----NE-FFDMPDLIEKLIKEGKKVGVFPIH-EYWLDIGRPEDYEKA 219 (220)
T ss_pred --C-----CC-CcCHHHHHHHHHHCCCcEEEEEeC-CeEEeCCCHHHHHhh
Confidence 0 11 122344555555543445556655 579999999998765
|
This is a subfamily of nucleotidyl transferases. Nucleotidyl transferases transfer nucleotides onto phosphosugars. The activated sugars are precursors for synthesis of lipopolysaccharide, glycolipids and polysaccharides. Other subfamilies of nucleotidyl transferases include Alpha-D-Glucose-1-Phosphate Cytidylyltransferase, Mannose-1-phosphate guanyltransferase, and Glucose-1-phosphate thymidylyltransferase. |
| >cd06428 M1P_guanylylT_A_like_N N-terminal domain of M1P_guanylyl_A_ like proteins are likely to be a isoform of GDP-mannose pyrophosphorylase | Back alignment and domain information |
|---|
Probab=99.43 E-value=6e-12 Score=123.71 Aligned_cols=177 Identities=17% Similarity=0.195 Sum_probs=118.1
Q ss_pred EEEEcCC--CCCcCCC---CCCccccccCCCCchHHHHHHHHHHh-hhhcCCcccEEEecCCCChHHHHHHHHHhc-CCC
Q 012172 82 VLKLNGG--LGTTMGC---TGPKSVIEVRNGLTFLDLIVIQIENL-NAKYGCNVPLLLMNSFNTHDDTSKIIEKYS-KSN 154 (469)
Q Consensus 82 vviLAGG--~GTRmg~---~~PK~l~~v~~gks~L~~~~~~i~~l-~~~~~~~iplviMtS~~t~e~t~~~~~~~~-g~~ 154 (469)
+|||||| .||||+. ..||+|+|+ .|+|+++++++.+..+ +-+ .++|.+++ ..+.+.+++.+.. ..+
T Consensus 1 ~iIla~G~~~GtRl~plt~~~PK~llpv-~g~plI~~~l~~l~~~~gi~-----~i~iv~~~-~~~~i~~~l~~~~~~~~ 73 (257)
T cd06428 1 AVILVGGPQKGTRFRPLSLDVPKPLFPV-AGKPMIHHHIEACAKVPDLK-----EVLLIGFY-PESVFSDFISDAQQEFN 73 (257)
T ss_pred CEEEccCCCCCcccCCccCCCCcccCeE-CCeeHHHHHHHHHHhcCCCc-----EEEEEecC-CHHHHHHHHHhcccccC
Confidence 4799999 8999997 789999999 9999999999999875 322 23444444 6788888887532 112
Q ss_pred CceEEEEecCcceecCCCCcccCCCCCCCCcccccCCCcccchhccccchHHHHHHc-CCcEEEEEeCcccccccc-HHH
Q 012172 155 VEIHTFNQSQYPRLCADDFVPLPCKGKTDKDGWYPPGHGDVFPSLMNSGKLDALISQ-GKEYVFAANSDNLGAIVD-LKI 232 (469)
Q Consensus 155 ~~i~~f~Q~~~P~l~~~~~~~~~~~~~~~~~~~~P~GhGd~~~~L~~sg~L~~l~~~-G~~~v~v~n~DNL~~~~d-p~~ 232 (469)
..+.+..|. .|.|+|+.+.... .++.. .-++++|.++|++... | -.+
T Consensus 74 ~~i~~~~~~------------------------~~~Gt~~al~~a~------~~l~~~~~~~~lv~~gD~~~~~-dl~~~ 122 (257)
T cd06428 74 VPIRYLQEY------------------------KPLGTAGGLYHFR------DQILAGNPSAFFVLNADVCCDF-PLQEL 122 (257)
T ss_pred ceEEEecCC------------------------ccCCcHHHHHHHH------HHhhccCCCCEEEEcCCeecCC-CHHHH
Confidence 223332221 2578888754322 23332 3468999999997654 4 366
Q ss_pred HHHHHHcCCcceEEEeeec-cCCCcceEEEEe--CCee-EEEEeccCChhhhhhccccccccEEEEEeEEEeHHHHHHH
Q 012172 233 LNHLIQNKNEYCMEVTPKT-LADVKGGTLISY--EGKV-QLLEIAQVPDEHVNEFKSIEKFKIFNTNNLWVNLKAIKRL 307 (469)
Q Consensus 233 Lg~~~~~~~~~~~~v~~k~-~~~~~~G~iv~~--~g~~-~ivEy~~~~~e~~~~~~~~~~~~~~Nt~~~~~~l~~L~~~ 307 (469)
+.++.++++++++.+.+.. ..+..+|++... +|++ .++|..+ . ..-...|+|+|+|+.+.+..+
T Consensus 123 ~~~h~~~~~~~tl~~~~~~~~~~~~yg~v~~d~~~g~v~~~~Ekp~----~-------~~~~~~~~Giyi~~~~~~~~i 190 (257)
T cd06428 123 LEFHKKHGASGTILGTEASREQASNYGCIVEDPSTGEVLHYVEKPE----T-------FVSDLINCGVYLFSPEIFDTI 190 (257)
T ss_pred HHHHHHcCCCEEEEEEEccccccccccEEEEeCCCCeEEEEEeCCC----C-------cccceEEEEEEEECHHHHHHH
Confidence 7778777888766554322 346678987654 4676 5777422 1 122478999999999987544
|
N-terminal domain of the M1P-guanylyltransferase A-isoform like proteins: The proteins of this family are likely to be a isoform of GDP-mannose pyrophosphorylase. Their sequences are highly conserved with mannose-1-phosphate guanyltransferase, but generally about 40-60 bases longer. GDP-mannose pyrophosphorylase (GTP: alpha-d-mannose-1-phosphate guanyltransferase) catalyzes the formation of GDP-d-mannose from GTP and alpha-d-mannose-1-Phosphate. It contains an N-terminal catalytic domain that resembles a dinucleotide-binding Rossmann fold and a C-terminal LbH fold domain. GDP-d-mannose is the activated form of mannose for formation of cell wall lipoarabinomannan and various mannose-containing glycolipids and polysaccharides. The function of GDP-mannose pyrophosphorylase is essential for cell wall integrity, morphogenesis and viability. Repre |
| >cd06425 M1P_guanylylT_B_like_N N-terminal domain of the M1P-guanylyltransferase B-isoform like proteins | Back alignment and domain information |
|---|
Probab=99.41 E-value=2.7e-11 Score=117.19 Aligned_cols=223 Identities=18% Similarity=0.199 Sum_probs=137.5
Q ss_pred eEEEEcCCCCCcCCC---CCCccccccCCCCchHHHHHHHHHHhhhhcCCcccEEEecCCCChHHHHHHHHHhcC-CCCc
Q 012172 81 VVLKLNGGLGTTMGC---TGPKSVIEVRNGLTFLDLIVIQIENLNAKYGCNVPLLLMNSFNTHDDTSKIIEKYSK-SNVE 156 (469)
Q Consensus 81 avviLAGG~GTRmg~---~~PK~l~~v~~gks~L~~~~~~i~~l~~~~~~~iplviMtS~~t~e~t~~~~~~~~g-~~~~ 156 (469)
-+||||||.||||+. ..||.|+|+ .|+|++++.++++...+-+ .++|.|++ .++.+.+++.++.. .+..
T Consensus 2 ~~iIlAaG~g~R~~~lt~~~pK~llpv-~g~pli~~~l~~l~~~g~~-----~v~iv~~~-~~~~~~~~l~~~~~~~~~~ 74 (233)
T cd06425 2 KALILVGGYGTRLRPLTLTVPKPLVEF-CNKPMIEHQIEALAKAGVK-----EIILAVNY-RPEDMVPFLKEYEKKLGIK 74 (233)
T ss_pred cEEEecCCCccccCccccCCCCccCeE-CCcchHHHHHHHHHHCCCc-----EEEEEeee-CHHHHHHHHhcccccCCeE
Confidence 368999999999975 689999999 8999999999999886422 34555555 67788888875311 1111
Q ss_pred eEEEEecCcceecCCCCcccCCCCCCCCcccccCCCcccchhccccchHHHHHHcCCcEEEEEeCccccccccHHHHHHH
Q 012172 157 IHTFNQSQYPRLCADDFVPLPCKGKTDKDGWYPPGHGDVFPSLMNSGKLDALISQGKEYVFAANSDNLGAIVDLKILNHL 236 (469)
Q Consensus 157 i~~f~Q~~~P~l~~~~~~~~~~~~~~~~~~~~P~GhGd~~~~L~~sg~L~~l~~~G~~~v~v~n~DNL~~~~dp~~Lg~~ 236 (469)
+.+.. +..|.|+|+.+.... ..+....+-++|.++|++....-..++.++
T Consensus 75 i~~~~------------------------~~~~~G~~~al~~a~------~~~~~~~~~~lv~~~D~~~~~~~~~~~~~~ 124 (233)
T cd06425 75 ITFSI------------------------ETEPLGTAGPLALAR------DLLGDDDEPFFVLNSDVICDFPLAELLDFH 124 (233)
T ss_pred EEecc------------------------CCCCCccHHHHHHHH------HHhccCCCCEEEEeCCEeeCCCHHHHHHHH
Confidence 22111 123678887754322 222222244788899996553224678888
Q ss_pred HHcCCcceEEEeeeccCCCcceEEEEe--CCee-EEEEeccCChhhhhhccccccccEEEEEeEEEeHHHHHHHHHhccc
Q 012172 237 IQNKNEYCMEVTPKTLADVKGGTLISY--EGKV-QLLEIAQVPDEHVNEFKSIEKFKIFNTNNLWVNLKAIKRLVEADAL 313 (469)
Q Consensus 237 ~~~~~~~~~~v~~k~~~~~~~G~iv~~--~g~~-~ivEy~~~~~e~~~~~~~~~~~~~~Nt~~~~~~l~~L~~~l~~~~~ 313 (469)
..++++.++.+.+. .++..+|.+..+ +|++ .++|. |.+. .-.+.|+|+|+|+.+.++.+...
T Consensus 125 ~~~~~~~~~~~~~~-~~~~~~g~v~~d~~~~~v~~~~ek---p~~~--------~~~~~~~Giyi~~~~~l~~l~~~--- 189 (233)
T cd06425 125 KKHGAEGTILVTKV-EDPSKYGVVVHDENTGRIERFVEK---PKVF--------VGNKINAGIYILNPSVLDRIPLR--- 189 (233)
T ss_pred HHcCCCEEEEEEEc-CCccccCeEEEcCCCCEEEEEEEC---CCCC--------CCCEEEEEEEEECHHHHHhcccC---
Confidence 88888877766644 456788987654 3555 34443 2211 12468999999999988654221
Q ss_pred ccccccCCCcCCCcceehhHHHhhhHhhhcccceeEeecCccccccCCchhHHHHHHH
Q 012172 314 KMEIIPNPKEVDGIKVLQLETAAGAAIRFFDHAIGCNVHRSRFLPVKATSDLLLVQSD 371 (469)
Q Consensus 314 ~lp~~~n~K~~~g~~~iqle~~~~d~~~~~~~~~~v~v~r~eF~pVKn~~dL~~~~~~ 371 (469)
. .+.+. .++...... .++.+++.+ ..+.-|.+..++..+.+.
T Consensus 190 --------~-~~~~~-----~~~~~l~~~-~~v~~~~~~-g~w~digt~~~~~~a~~~ 231 (233)
T cd06425 190 --------P-TSIEK-----EIFPKMASE-GQLYAYELP-GFWMDIGQPKDFLKGMSL 231 (233)
T ss_pred --------c-ccchh-----hhHHHHHhc-CCEEEEeeC-CEEEcCCCHHHHHHHHHH
Confidence 0 10000 111112222 234444442 368889999998887654
|
GDP-mannose pyrophosphorylase (GTP: alpha-d-mannose-1-phosphate guanyltransferase) catalyzes the formation of GDP-d-mannose from GTP and alpha-d-mannose-1-Phosphate. It contains an N-terminal catalytic domain and a C-terminal Lefthanded-beta-Helix fold domain. GDP-d-mannose is the activated form of mannose for formation of cell wall lipoarabinomannan and various mannose-containing glycolipids and polysaccharides. The function of GDP-mannose pyrophosphorylase is essential for cell wall integrity, morphogenesis and viability. Repression of GDP-mannose pyrophosphorylase in yeast leads to phenotypes, such as cell lysis, defective cell wall, and failure of polarized growth and cell separation. |
| >PRK05450 3-deoxy-manno-octulosonate cytidylyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.38 E-value=4.3e-11 Score=116.47 Aligned_cols=235 Identities=13% Similarity=0.104 Sum_probs=138.3
Q ss_pred ceeEEEEcCCCCCcCCCCCCccccccCCCCchHHHHHHHHHHhhhhcCCcccEEEecCCCChHHHHHHHHHhcCCCCceE
Q 012172 79 KLVVLKLNGGLGTTMGCTGPKSVIEVRNGLTFLDLIVIQIENLNAKYGCNVPLLLMNSFNTHDDTSKIIEKYSKSNVEIH 158 (469)
Q Consensus 79 k~avviLAGG~GTRmg~~~PK~l~~v~~gks~L~~~~~~i~~l~~~~~~~iplviMtS~~t~e~t~~~~~~~~g~~~~i~ 158 (469)
++++|+||||.|+||+ ||.|+++ .|+|+|+|+++++...+- -.+++-| . ++.+.+++.++ + ..+.
T Consensus 2 ~~~~iIlA~g~S~R~~---~K~Ll~i-~Gkpll~~~l~~l~~~~i-----~~ivvv~-~--~~~i~~~~~~~-~--~~v~ 66 (245)
T PRK05450 2 KFLIIIPARYASTRLP---GKPLADI-GGKPMIVRVYERASKAGA-----DRVVVAT-D--DERIADAVEAF-G--GEVV 66 (245)
T ss_pred ceEEEEecCCCCCCCC---CCccccc-CCcCHHHHHHHHHHhcCC-----CeEEEEC-C--cHHHHHHHHHc-C--CEEE
Confidence 6789999999999995 7999999 999999999999987631 1233432 2 46777777542 1 1222
Q ss_pred EEEecCcceecCCCCcccCCCCCCCCcccccCCCcccchhccccchHHHHHHcCCcEEEEEeCcc-ccccccH-HHHHHH
Q 012172 159 TFNQSQYPRLCADDFVPLPCKGKTDKDGWYPPGHGDVFPSLMNSGKLDALISQGKEYVFAANSDN-LGAIVDL-KILNHL 236 (469)
Q Consensus 159 ~f~Q~~~P~l~~~~~~~~~~~~~~~~~~~~P~GhGd~~~~L~~sg~L~~l~~~G~~~v~v~n~DN-L~~~~dp-~~Lg~~ 236 (469)
+..|. .+.|++++..++ ..+...+.++++++++|+ +....+. .++..+
T Consensus 67 ~~~~~------------------------~~~gt~~~~~~~------~~~~~~~~~~vlv~~~D~Pli~~~~l~~li~~~ 116 (245)
T PRK05450 67 MTSPD------------------------HPSGTDRIAEAA------AKLGLADDDIVVNVQGDEPLIPPEIIDQVAEPL 116 (245)
T ss_pred ECCCc------------------------CCCchHHHHHHH------HhcCCCCCCEEEEecCCCCCCCHHHHHHHHHHH
Confidence 11111 245666654322 122111346899999999 7765443 344444
Q ss_pred HHcCCcceEEEeeec-----cCCCcceEEEEeCCeeE-EEEeccCChhhhhhccccccccEEEEEeEEEeHHHHHHHHHh
Q 012172 237 IQNKNEYCMEVTPKT-----LADVKGGTLISYEGKVQ-LLEIAQVPDEHVNEFKSIEKFKIFNTNNLWVNLKAIKRLVEA 310 (469)
Q Consensus 237 ~~~~~~~~~~v~~k~-----~~~~~~G~iv~~~g~~~-ivEy~~~~~e~~~~~~~~~~~~~~Nt~~~~~~l~~L~~~l~~ 310 (469)
..++.++.+-+++.. ..++.+|++...+|++. +.|.-..++.+.... ........|+|+|+|+.+.++.+.+.
T Consensus 117 ~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~d~~g~v~~~~e~~~~~~~~~~~~-~~~~~~~~~~Giy~~~~~~l~~~~~~ 195 (245)
T PRK05450 117 ANPEADMATLAVPIHDAEEAFNPNVVKVVLDADGRALYFSRAPIPYGRDAFAD-SAPTPVYRHIGIYAYRRGFLRRFVSL 195 (245)
T ss_pred hcCCCCeEeeeeecCCHHHhcCcCCCEEEeCCCCcEEEecCCCCCCCCCcccc-ccCccccEEEEEEecCHHHHHHHHhC
Confidence 444566655554442 34555676654567763 555432221110000 01335678999999999999887652
Q ss_pred cccccccccCCCcCCCcceehhHHHhhhHhhhcccceeEeecCccccccCCchhHHHHHHHH
Q 012172 311 DALKMEIIPNPKEVDGIKVLQLETAAGAAIRFFDHAIGCNVHRSRFLPVKATSDLLLVQSDL 372 (469)
Q Consensus 311 ~~~~lp~~~n~K~~~g~~~iqle~~~~d~~~~~~~~~~v~v~r~eF~pVKn~~dL~~~~~~~ 372 (469)
..+. ....-.++++ .++..-.++.++.++...+..|++..||..|++.+
T Consensus 196 -------~~~~--~~~~~~~~~~----~~~~~g~~v~~~~~~~~~w~~i~~~~dl~~a~~~~ 244 (245)
T PRK05450 196 -------PPSP--LEKIESLEQL----RALENGYRIHVVVVEEAPSIGVDTPEDLERVRALL 244 (245)
T ss_pred -------CCCc--cccchhHHHH----HHHHCCCceEEEEeCCCCCCCcCCHHHHHHHHHHh
Confidence 1000 0000111112 12333234566666667899999999999998653
|
|
| >cd06915 NTP_transferase_WcbM_like WcbM_like is a subfamily of nucleotidyl transferases | Back alignment and domain information |
|---|
Probab=99.38 E-value=4.6e-11 Score=113.65 Aligned_cols=216 Identities=17% Similarity=0.230 Sum_probs=129.3
Q ss_pred EEEEcCCCCCcCCC---CCCccccccCCCCchHHHHHHHHHHhhhhcCCcccEEEecCCCChHHHHHHHHHhcCCCCceE
Q 012172 82 VLKLNGGLGTTMGC---TGPKSVIEVRNGLTFLDLIVIQIENLNAKYGCNVPLLLMNSFNTHDDTSKIIEKYSKSNVEIH 158 (469)
Q Consensus 82 vviLAGG~GTRmg~---~~PK~l~~v~~gks~L~~~~~~i~~l~~~~~~~iplviMtS~~t~e~t~~~~~~~~g~~~~i~ 158 (469)
+||||||+||||+. ..||.|+++ .|+|+++++++++.+..- + .+++.|++ ..+.+.+++......+..+.
T Consensus 1 aiIlaaG~g~R~~~~t~~~pK~ll~i-~g~pli~~~l~~l~~~g~----~-~v~vv~~~-~~~~i~~~~~~~~~~~~~~~ 73 (223)
T cd06915 1 AVILAGGLGTRLRSVVKDLPKPLAPV-AGRPFLEYLLEYLARQGI----S-RIVLSVGY-LAEQIEEYFGDGYRGGIRIY 73 (223)
T ss_pred CEEecCCcccccCcccCCCCccccEE-CCcchHHHHHHHHHHCCC----C-EEEEEccc-CHHHHHHHHcCccccCceEE
Confidence 48999999999985 579999999 899999999999987531 1 34555554 56777777764211011222
Q ss_pred EEEecCcceecCCCCcccCCCCCCCCcccccCCCcccchhccccchHHHHHHcCCcEEEEEeCccccccccH-HHHHHHH
Q 012172 159 TFNQSQYPRLCADDFVPLPCKGKTDKDGWYPPGHGDVFPSLMNSGKLDALISQGKEYVFAANSDNLGAIVDL-KILNHLI 237 (469)
Q Consensus 159 ~f~Q~~~P~l~~~~~~~~~~~~~~~~~~~~P~GhGd~~~~L~~sg~L~~l~~~G~~~v~v~n~DNL~~~~dp-~~Lg~~~ 237 (469)
+..| ..+.|+++.+.... +.+ .-++++++++|++.. .|. .++-.+.
T Consensus 74 ~~~~------------------------~~~~G~~~~l~~a~-----~~~---~~~~~lv~~~D~~~~-~~~~~~l~~~~ 120 (223)
T cd06915 74 YVIE------------------------PEPLGTGGAIKNAL-----PKL---PEDQFLVLNGDTYFD-VDLLALLAALR 120 (223)
T ss_pred EEEC------------------------CCCCcchHHHHHHH-----hhc---CCCCEEEEECCcccC-CCHHHHHHHHH
Confidence 2121 12467776532211 122 347899999999543 232 4455555
Q ss_pred HcCCcceEEEeeeccCCCcceEEEE-eCCeeE-EEEeccCChhhhhhccccccccEEEEEeEEEeHHHHHHHHHhccccc
Q 012172 238 QNKNEYCMEVTPKTLADVKGGTLIS-YEGKVQ-LLEIAQVPDEHVNEFKSIEKFKIFNTNNLWVNLKAIKRLVEADALKM 315 (469)
Q Consensus 238 ~~~~~~~~~v~~k~~~~~~~G~iv~-~~g~~~-ivEy~~~~~e~~~~~~~~~~~~~~Nt~~~~~~l~~L~~~l~~~~~~l 315 (469)
+.+.+.++.+.+.. ....+|.+.. .+|++. +.|- +.. ......|+|+++|+.+.+..+...
T Consensus 121 ~~~~~~~~~~~~~~-~~~~~~~v~~d~~~~v~~~~ek---~~~--------~~~~~~~~Giy~~~~~~l~~~~~~----- 183 (223)
T cd06915 121 ASGADATMALRRVP-DASRYGNVTVDGDGRVIAFVEK---GPG--------AAPGLINGGVYLLRKEILAEIPAD----- 183 (223)
T ss_pred hCCCcEEEEEEECC-CCCcceeEEECCCCeEEEEEeC---CCC--------CCCCcEEEEEEEECHHHHhhCCcc-----
Confidence 56677776665543 3456776544 345653 4442 111 113467999999999988654211
Q ss_pred ccccCCCcCCCcceehhHHHhhhHhhhcccceeEeecCccccccCCchhHHHH
Q 012172 316 EIIPNPKEVDGIKVLQLETAAGAAIRFFDHAIGCNVHRSRFLPVKATSDLLLV 368 (469)
Q Consensus 316 p~~~n~K~~~g~~~iqle~~~~d~~~~~~~~~~v~v~r~eF~pVKn~~dL~~~ 368 (469)
+ . . .+..++..++... ++.+++++ ..+..|.+.+|+..|
T Consensus 184 ------~-~---~--~~~~~~~~l~~~~-~v~~~~~~-~~~~dI~t~~dl~~a 222 (223)
T cd06915 184 ------A-F---S--LEADVLPALVKRG-RLYGFEVD-GYFIDIGIPEDYARA 222 (223)
T ss_pred ------C-C---C--hHHHHHHHHHhcC-cEEEEecC-CeEEecCCHHHHHhh
Confidence 1 0 0 0112222223332 45566665 568999999998776
|
WcbM protein of Burkholderia mallei is involved in the biosynthesis, export or translocation of capsule. It is a subfamily of nucleotidyl transferases that transfer nucleotides onto phosphosugars. |
| >cd04181 NTP_transferase NTP_transferases catalyze the transfer of nucleotides onto phosphosugars | Back alignment and domain information |
|---|
Probab=99.37 E-value=1.9e-11 Score=116.01 Aligned_cols=176 Identities=18% Similarity=0.275 Sum_probs=116.7
Q ss_pred EEEEcCCCCCcCCC---CCCccccccCCCCchHHHHHHHHHHhhhhcCCcccEEEecCCCChHHHHHHHHHhcCCCCceE
Q 012172 82 VLKLNGGLGTTMGC---TGPKSVIEVRNGLTFLDLIVIQIENLNAKYGCNVPLLLMNSFNTHDDTSKIIEKYSKSNVEIH 158 (469)
Q Consensus 82 vviLAGG~GTRmg~---~~PK~l~~v~~gks~L~~~~~~i~~l~~~~~~~iplviMtS~~t~e~t~~~~~~~~g~~~~i~ 158 (469)
+||||||.||||+. ..||.|+|+ .|+|++++.++.+...+-+ .+++.+++ ..+.+.+++.++...+..+.
T Consensus 1 aiIlaaG~g~R~~~~t~~~pK~ll~v-~g~pli~~~l~~l~~~g~~-----~i~vv~~~-~~~~i~~~~~~~~~~~~~i~ 73 (217)
T cd04181 1 AVILAAGKGTRLRPLTDTRPKPLLPI-AGKPILEYIIERLARAGID-----EIILVVGY-LGEQIEEYFGDGSKFGVNIE 73 (217)
T ss_pred CEEecCCccccccccccCCCccccEE-CCeeHHHHHHHHHHHCCCC-----EEEEEecc-CHHHHHHHHcChhhcCceEE
Confidence 48999999999984 689999999 9999999999999886422 34455555 56777777765321112344
Q ss_pred EEEecCcceecCCCCcccCCCCCCCCcccccCCCcccchhccccchHHHHHHcCCcEEEEEeCccccccccHHHHHHHHH
Q 012172 159 TFNQSQYPRLCADDFVPLPCKGKTDKDGWYPPGHGDVFPSLMNSGKLDALISQGKEYVFAANSDNLGAIVDLKILNHLIQ 238 (469)
Q Consensus 159 ~f~Q~~~P~l~~~~~~~~~~~~~~~~~~~~P~GhGd~~~~L~~sg~L~~l~~~G~~~v~v~n~DNL~~~~dp~~Lg~~~~ 238 (469)
+..|. .|.|+|+.+.... +.+ ..++++|.++|++.....-.++.++..
T Consensus 74 ~~~~~------------------------~~~g~~~al~~~~-----~~~---~~~~~lv~~~D~~~~~~~~~~~~~~~~ 121 (217)
T cd04181 74 YVVQE------------------------EPLGTAGAVRNAE-----DFL---GDDDFLVVNGDVLTDLDLSELLRFHRE 121 (217)
T ss_pred EEeCC------------------------CCCccHHHHHHhh-----hhc---CCCCEEEEECCeecCcCHHHHHHHHHh
Confidence 33332 1467777754332 222 457899999999665433456666777
Q ss_pred cCCcceEEEeeeccCCCcceEEEEe-CCee-EEEEeccCChhhhhhccccccccEEEEEeEEEeHHHHHHHHH
Q 012172 239 NKNEYCMEVTPKTLADVKGGTLISY-EGKV-QLLEIAQVPDEHVNEFKSIEKFKIFNTNNLWVNLKAIKRLVE 309 (469)
Q Consensus 239 ~~~~~~~~v~~k~~~~~~~G~iv~~-~g~~-~ivEy~~~~~e~~~~~~~~~~~~~~Nt~~~~~~l~~L~~~l~ 309 (469)
++++.++.+.+. ..+..+|.+..+ +|++ .++|..+.+. -...|+|.++|+.+.+ +.++
T Consensus 122 ~~~~~~~~~~~~-~~~~~~~~v~~d~~~~v~~~~ek~~~~~-----------~~~~~~Giy~~~~~~~-~~l~ 181 (217)
T cd04181 122 KGADATIAVKEV-EDPSRYGVVELDDDGRVTRFVEKPTLPE-----------SNLANAGIYIFEPEIL-DYIP 181 (217)
T ss_pred cCCCEEEEEEEc-CCCCcceEEEEcCCCcEEEEEECCCCCC-----------CCEEEEEEEEECHHHH-Hhhh
Confidence 777776665443 366778877654 3666 4666433221 2468999999999877 4444
|
Nucleotidyltransferases transfer nucleotides onto phosphosugars. The enzyme family includes Alpha-D-Glucose-1-Phosphate Cytidylyltransferase, Mannose-1-phosphate guanyltransferase, and Glucose-1-phosphate thymidylyltransferase. The products are activated sugars that are precursors for synthesis of lipopolysaccharide, glycolipids and polysaccharides. |
| >COG0448 GlgC ADP-glucose pyrophosphorylase [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.34 E-value=8.8e-11 Score=119.89 Aligned_cols=321 Identities=16% Similarity=0.234 Sum_probs=178.5
Q ss_pred cceeEEEEcCCCCCcCCC---CCCccccccCCCCchHHHHHHHHHHhhhhcCCcccEEEecCCCChHHHHHHHHH-hc-C
Q 012172 78 DKLVVLKLNGGLGTTMGC---TGPKSVIEVRNGLTFLDLIVIQIENLNAKYGCNVPLLLMNSFNTHDDTSKIIEK-YS-K 152 (469)
Q Consensus 78 ~k~avviLAGG~GTRmg~---~~PK~l~~v~~gks~L~~~~~~i~~l~~~~~~~iplviMtS~~t~e~t~~~~~~-~~-g 152 (469)
+++-++|||||+|+||+- ..||+..|+.+.--++|..+..+..-+ --.+.+.|-+..+ ...+++.. +. +
T Consensus 4 ~~~laiILaGg~G~rL~~LT~~RakpAVpFgGkYRiIDF~LSN~vNSG-----i~~I~VltQy~~~-SL~~Hi~~G~~w~ 77 (393)
T COG0448 4 KNVLAIILAGGRGSRLSPLTKDRAKPAVPFGGKYRIIDFALSNCVNSG-----IRRIGVLTQYKSH-SLNDHIGRGWPWD 77 (393)
T ss_pred cceEEEEEcCCCCCccchhhhCccccccccCceeEEEeEEcccccccC-----CCeEEEEeccchh-HHHHHhhCCCccc
Confidence 467889999999999984 679999999444456666665554432 1245556666555 55566664 22 1
Q ss_pred ---CCCceEEEEecCcceecCCCCcccCCCCCCCCcccccCCCcccchhccccchHHHHHHcCCcEEEEEeCcccccccc
Q 012172 153 ---SNVEIHTFNQSQYPRLCADDFVPLPCKGKTDKDGWYPPGHGDVFPSLMNSGKLDALISQGKEYVFAANSDNLGAIVD 229 (469)
Q Consensus 153 ---~~~~i~~f~Q~~~P~l~~~~~~~~~~~~~~~~~~~~P~GhGd~~~~L~~sg~L~~l~~~G~~~v~v~n~DNL~~~~d 229 (469)
....+.++.+...+ ..--|+ -|+.|++. ++ +..+.+.+.+|++|+++|-+.+..-
T Consensus 78 l~~~~~~v~ilp~~~~~----------------~~~~wy-~Gtadai~---Qn--l~~i~~~~~eyvlIlsgDhIYkmDy 135 (393)
T COG0448 78 LDRKNGGVFILPAQQRE----------------GGERWY-EGTADAIY---QN--LLIIRRSDPEYVLILSGDHIYKMDY 135 (393)
T ss_pred cccccCcEEEeCchhcc----------------CCCcce-eccHHHHH---Hh--HHHHHhcCCCEEEEecCCEEEecCH
Confidence 11224433311100 122344 56777643 22 3445577889999999999999744
Q ss_pred HHHHHHHHHcCCcceEEE--eeeccCCCcceEEEEe--CCeeEEEEeccCChhhhhhccccccccEEEEEeEEEeHHHHH
Q 012172 230 LKILNHLIQNKNEYCMEV--TPKTLADVKGGTLISY--EGKVQLLEIAQVPDEHVNEFKSIEKFKIFNTNNLWVNLKAIK 305 (469)
Q Consensus 230 p~~Lg~~~~~~~~~~~~v--~~k~~~~~~~G~iv~~--~g~~~ivEy~~~~~e~~~~~~~~~~~~~~Nt~~~~~~l~~L~ 305 (469)
-.+|-+|.+.++++++.+ +++..+.+ .| +... +|++ +|..+=|.+. .....+...|+|.|+.+.|.
T Consensus 136 ~~ml~~H~~~gadiTv~~~~Vp~~eas~-fG-im~~D~~~~i--~~F~eKp~~~------~~~~~laSMgiYIf~~~~L~ 205 (393)
T COG0448 136 SDMLDFHIESGADVTVAVKEVPREEASR-FG-VMNVDENGRI--IEFVEKPADG------PPSNSLASMGIYIFNTDLLK 205 (393)
T ss_pred HHHHHHHHHcCCCEEEEEEECChHhhhh-cC-ceEECCCCCE--EeeeeccCcC------CcccceeeeeeEEEcHHHHH
Confidence 588999999999998877 44544444 45 4443 4555 4444434331 12234678999999999999
Q ss_pred HHHHhcccccccccCCCcCCCcceehhHHHhhhHhhhc---ccceeEeecCccccccCCchhHHHHHHHHH----Hhh--
Q 012172 306 RLVEADALKMEIIPNPKEVDGIKVLQLETAAGAAIRFF---DHAIGCNVHRSRFLPVKATSDLLLVQSDLY----TLA-- 376 (469)
Q Consensus 306 ~~l~~~~~~lp~~~n~K~~~g~~~iqle~~~~d~~~~~---~~~~~v~v~r~eF~pVKn~~dL~~~~~~~~----~l~-- 376 (469)
++|++. ..+++.- -.+-.+.++.. .++.+. +|.+ --.|.-+.+|-|+ .+.
T Consensus 206 ~~L~~~------~~~~~~~--------~DfgkdiIp~~~~~~~v~AY-----~f~g--Yw~dVgTi~syy~aNmdLl~~~ 264 (393)
T COG0448 206 ELLEED------AKDPNSS--------HDFGKDIIPKLLERGKVYAY-----EFSG--YWRDVGTIDSYYEANMDLLSPQ 264 (393)
T ss_pred HHHHHH------hcccCcc--------ccchHHHHHHHHhcCCEEEE-----eccc--hhhhcccHHHHHHhhHHhcCCC
Confidence 999862 1111211 01222222211 112222 2332 1112222222222 111
Q ss_pred cCceeecCC-cc----CCCCCeEEECCCcccccccccccccCCcccccCceEEEe---eEEECCCcEEeeeEEEEecCCC
Q 012172 377 DGFVTRNEA-RK----NPANPTIELGPEFKKVGNFLSRFKSIPSIIELDSLKVTG---DVWFGANITLKGKVTIAAKSGE 448 (469)
Q Consensus 377 ~g~l~~~~~-r~----~~~~p~V~l~~~~~~~~~~~~~i~~~p~~~~~~~l~v~G---~v~fg~~V~i~g~~~I~~~~~~ 448 (469)
...-.-++. ++ ...+|+-.. +-++.. -||+ +..++|+| +.++++||+|+.+++|+++.--
T Consensus 265 ~~~~lyd~~w~IyT~~~~~pPak~~-----~~s~v~------nSLv-~~GciI~G~V~nSVL~~~v~I~~gs~i~~svim 332 (393)
T COG0448 265 PELNLYDRNWPIYTKNKNLPPAKFV-----NDSEVS------NSLV-AGGCIISGTVENSVLFRGVRIGKGSVIENSVIM 332 (393)
T ss_pred CcccccCCCCceeecCCCCCCceEe-----cCceEe------eeee-eCCeEEEeEEEeeEEecCeEECCCCEEEeeEEe
Confidence 111111111 00 011222221 111100 1222 36788888 4567899999988888866544
Q ss_pred c-eeeCCCCeeecceecCCCCC
Q 012172 449 K-LEIPDGAVLENKEINGPGDL 469 (469)
Q Consensus 449 ~-~~I~~~s~le~~~v~~~~~~ 469 (469)
+ +.|+.+++|+.++|..|+.|
T Consensus 333 ~~~~IG~~~~l~~aIIDk~v~I 354 (393)
T COG0448 333 PDVEIGEGAVLRRAIIDKNVVI 354 (393)
T ss_pred CCcEECCCCEEEEEEeCCCcEe
Confidence 4 88999999999998887764
|
|
| >cd02517 CMP-KDO-Synthetase CMP-KDO synthetase catalyzes the activation of KDO which is an essential component of the lipopolysaccharide | Back alignment and domain information |
|---|
Probab=99.34 E-value=2.8e-10 Score=110.26 Aligned_cols=228 Identities=11% Similarity=0.106 Sum_probs=126.8
Q ss_pred ceeEEEEcCCCCCcCCCCCCccccccCCCCchHHHHHHHHHHhhhhcCCccc-EEEecCCCChHHHHHHHHHhcCCCCce
Q 012172 79 KLVVLKLNGGLGTTMGCTGPKSVIEVRNGLTFLDLIVIQIENLNAKYGCNVP-LLLMNSFNTHDDTSKIIEKYSKSNVEI 157 (469)
Q Consensus 79 k~avviLAGG~GTRmg~~~PK~l~~v~~gks~L~~~~~~i~~l~~~~~~~ip-lviMtS~~t~e~t~~~~~~~~g~~~~i 157 (469)
++.+|+||||.|+||+ ||.|+++ .|+|+|+|+++++.+.. .+. +++-+ . ++.+.+++..+ ++
T Consensus 1 ~~~~iIlA~g~s~R~~---~K~l~~i-~gkpll~~~l~~l~~~~-----~i~~ivvv~-~--~~~i~~~~~~~-----~~ 63 (239)
T cd02517 1 KVIVVIPARYASSRLP---GKPLADI-AGKPMIQHVYERAKKAK-----GLDEVVVAT-D--DERIADAVESF-----GG 63 (239)
T ss_pred CEEEEEecCCCCCCCC---CCCCccc-CCcCHHHHHHHHHHhCC-----CCCEEEEEC-C--cHHHHHHHHHc-----CC
Confidence 4678999999999996 7999999 99999999999998761 122 33322 2 46777777642 23
Q ss_pred EEEEecCcceecCCCCcccCCCCCCCCcccccCCCcccchhccccchHHHHHHcCCcEEEEEeCcc-ccccccH-HHHHH
Q 012172 158 HTFNQSQYPRLCADDFVPLPCKGKTDKDGWYPPGHGDVFPSLMNSGKLDALISQGKEYVFAANSDN-LGAIVDL-KILNH 235 (469)
Q Consensus 158 ~~f~Q~~~P~l~~~~~~~~~~~~~~~~~~~~P~GhGd~~~~L~~sg~L~~l~~~G~~~v~v~n~DN-L~~~~dp-~~Lg~ 235 (469)
.+..+.. ..+.|+|++..++. .+ ....+++++.++|+ +....+. .++..
T Consensus 64 ~~~~~~~----------------------~~~~gt~~~~~~~~------~~-~~~~d~vlv~~gD~Pli~~~~l~~l~~~ 114 (239)
T cd02517 64 KVVMTSP----------------------DHPSGTDRIAEVAE------KL-DADDDIVVNVQGDEPLIPPEMIDQVVAA 114 (239)
T ss_pred EEEEcCc----------------------ccCchhHHHHHHHH------hc-CCCCCEEEEecCCCCCCCHHHHHHHHHH
Confidence 3322221 12456776544331 22 11237899999999 7765443 33433
Q ss_pred HHHc-CCcceEEEeeeccC-----CCcceEEEEeCCeeE-EEEeccCChhhhhhccccccccEEEEEeEEEeHHHHHHHH
Q 012172 236 LIQN-KNEYCMEVTPKTLA-----DVKGGTLISYEGKVQ-LLEIAQVPDEHVNEFKSIEKFKIFNTNNLWVNLKAIKRLV 308 (469)
Q Consensus 236 ~~~~-~~~~~~~v~~k~~~-----~~~~G~iv~~~g~~~-ivEy~~~~~e~~~~~~~~~~~~~~Nt~~~~~~l~~L~~~l 308 (469)
+... ++++++-+++..++ ...+|++...+|++. +.|. ..+++. .. . .....+.|+|+|.|+.+.++.+.
T Consensus 115 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~v~~~~~~-~~~~~~-~~-~-~~~~~~~~~Giy~~~~~~~~~~~ 190 (239)
T cd02517 115 LKDDPGVDMATLATPISDEEELFNPNVVKVVLDKDGYALYFSRS-PIPYPR-DS-S-EDFPYYKHIGIYAYRRDFLLRFA 190 (239)
T ss_pred HHhCCCCCEEEEEEEcCCHHHccCCCCCEEEECCCCCEEEecCC-CCCCCC-CC-C-CCCceeEEEEEEEECHHHHHHHH
Confidence 3333 45554444443221 222334433456542 2221 112111 00 0 01235789999999999998875
Q ss_pred HhcccccccccCCCcCCCcceehhHHHhhhHhhhcccceeEeecCccccccCCchhHHHHHH
Q 012172 309 EADALKMEIIPNPKEVDGIKVLQLETAAGAAIRFFDHAIGCNVHRSRFLPVKATSDLLLVQS 370 (469)
Q Consensus 309 ~~~~~~lp~~~n~K~~~g~~~iqle~~~~d~~~~~~~~~~v~v~r~eF~pVKn~~dL~~~~~ 370 (469)
... . +.......+.+ ..+++.-.++.++.++. .+..|++..||..|++
T Consensus 191 ~~~-------~--~~~~~~~~~~~----~~~~~~g~~v~~~~~~~-~w~~i~t~~dl~~a~~ 238 (239)
T cd02517 191 ALP-------P--SPLEQIESLEQ----LRALENGYKIKVVETDH-ESIGVDTPEDLERVEA 238 (239)
T ss_pred hCC-------C--chhhhhhhHHH----HHHHHCCCceEEEEeCC-CCCCCCCHHHHHHHHh
Confidence 420 0 00000011111 01222222345555544 4999999999998874
|
CMP-KDO Synthetase: 3-Deoxy-D-manno-octulosonate cytidylyltransferase (CMP-KDO synthetase) catalyzes the conversion of CTP and 3-deoxy-D-manno-octulosonate into CMP-3-deoxy-D-manno-octulosonate (CMP-KDO) and pyrophosphate. KDO is an essential component of the lipopolysaccharide found in the outer surface of gram-negative eubacteria. It is also a constituent of the capsular polysaccharides of some gram-negative eubacteria. Its presence in the cell wall polysaccharides of green algae and plant were also discovered. However, they have not been found in yeast and animals. The absence of the enzyme in mammalian cells makes it an attractive target molecule for drug design. |
| >PRK13389 UTP--glucose-1-phosphate uridylyltransferase subunit GalU; Provisional | Back alignment and domain information |
|---|
Probab=99.33 E-value=3.1e-10 Score=114.60 Aligned_cols=245 Identities=11% Similarity=0.065 Sum_probs=143.5
Q ss_pred eeEEEEcCCCCCcCCC---CCCccccccCCCCchHHHHHHHHHHhhhhcCCcccEEEecCCCChHHHHHHHHHhcCCC--
Q 012172 80 LVVLKLNGGLGTTMGC---TGPKSVIEVRNGLTFLDLIVIQIENLNAKYGCNVPLLLMNSFNTHDDTSKIIEKYSKSN-- 154 (469)
Q Consensus 80 ~avviLAGG~GTRmg~---~~PK~l~~v~~gks~L~~~~~~i~~l~~~~~~~iplviMtS~~t~e~t~~~~~~~~g~~-- 154 (469)
..+||||||.||||+. ..||.|+|+ .|+|++++.++.+.+.+-+ .+++.+++ ..+.+.++|.......
T Consensus 9 ~~aiIlaaG~g~Rl~~~t~~~pK~l~pv-~g~pii~~~l~~l~~~gi~-----~i~vv~~~-~~~~i~~~~~~~~~~~~~ 81 (302)
T PRK13389 9 KKAVIPVAGLGTRMLPATKAIPKEMLPL-VDKPLIQYVVNECIAAGIT-----EIVLVTHS-SKNSIENHFDTSFELEAM 81 (302)
T ss_pred eEEEEECCcCCccCCCccCCCCceeeEE-CCEEHHHHHHHHHHHCCCC-----EEEEEeCC-CHHHHHHHHccchhhhhh
Confidence 3479999999999975 689999999 9999999999999886422 23444455 6788888886311000
Q ss_pred ----CceEEEEecCcceecCCCCcccCCCCCCCCcccccCCCcccchhccccchHHHHHHcCCcEEEEEeCccccc----
Q 012172 155 ----VEIHTFNQSQYPRLCADDFVPLPCKGKTDKDGWYPPGHGDVFPSLMNSGKLDALISQGKEYVFAANSDNLGA---- 226 (469)
Q Consensus 155 ----~~i~~f~Q~~~P~l~~~~~~~~~~~~~~~~~~~~P~GhGd~~~~L~~sg~L~~l~~~G~~~v~v~n~DNL~~---- 226 (469)
.+..+ .|+-.... ..+.. +. ......|.|+||++.... .++ +-+.++|.++|++..
T Consensus 82 l~~~~~~~~-~~e~~~i~-~~~~~-i~-----~~~q~~~~Gtg~Av~~a~------~~~--~~~~~lVl~gD~~~~~~~~ 145 (302)
T PRK13389 82 LEKRVKRQL-LDEVQSIC-PPHVT-IM-----QVRQGLAKGLGHAVLCAH------PVV--GDEPVAVILPDVILDEYES 145 (302)
T ss_pred hhhhhhhHH-HHhhhhcc-ccCce-EE-----EeecCCCCChHHHHHHHH------HHc--CCCCEEEEeCcceeccccc
Confidence 00000 00000000 00000 00 011234789999864322 222 235689999999642
Q ss_pred ---cccH-HHHHHHHHcCCcceEEEeeeccCCCcceEEEEeC--------Cee-EEEEeccCChhhhhhccccccccEEE
Q 012172 227 ---IVDL-KILNHLIQNKNEYCMEVTPKTLADVKGGTLISYE--------GKV-QLLEIAQVPDEHVNEFKSIEKFKIFN 293 (469)
Q Consensus 227 ---~~dp-~~Lg~~~~~~~~~~~~v~~k~~~~~~~G~iv~~~--------g~~-~ivEy~~~~~e~~~~~~~~~~~~~~N 293 (469)
..|. .++.++.+.+++ ++-+ .+..++..+|++...+ |++ .++|....+. ..-...|
T Consensus 146 ~~~~~dl~~l~~~h~~~~~~-tl~~-~~~~~~~~yGvv~~~~~~~~~~~~~~V~~~~EKp~~~~---------~~s~~~~ 214 (302)
T PRK13389 146 DLSQDNLAEMIRRFDETGHS-QIMV-EPVADVTAYGVVDCKGVELAPGESVPMVGVVEKPKADV---------APSNLAI 214 (302)
T ss_pred ccccccHHHHHHHHHhcCCC-EEEE-EEcccCCcceEEEecCcccccCCcceEEEEEECCCCCC---------CCccEEE
Confidence 2342 556666666665 3333 3446678899987642 234 4666433211 1124689
Q ss_pred EEeEEEeHHHHHHHHHhcccccccccCCCcCCCcceehhHHHhhhHhhhcccceeEeecCccccccCCchhHHHHHHHH
Q 012172 294 TNNLWVNLKAIKRLVEADALKMEIIPNPKEVDGIKVLQLETAAGAAIRFFDHAIGCNVHRSRFLPVKATSDLLLVQSDL 372 (469)
Q Consensus 294 t~~~~~~l~~L~~~l~~~~~~lp~~~n~K~~~g~~~iqle~~~~d~~~~~~~~~~v~v~r~eF~pVKn~~dL~~~~~~~ 372 (469)
+|+|+|+.+.+ +.++. ... . ....+.+..++..+++. .++.++.++ ..+.-|.+..++..+..++
T Consensus 215 ~GiYi~~~~il-~~l~~-------~~~-~---~~~e~~l~d~i~~l~~~-~~v~~~~~~-G~w~DIGtpe~~~~a~~~~ 279 (302)
T PRK13389 215 VGRYVLSADIW-PLLAK-------TPP-G---AGDEIQLTDAIDMLIEK-ETVEAYHMK-GKSHDCGNKLGYMQAFVEY 279 (302)
T ss_pred EEEEEECHHHH-HHHHh-------CCC-C---CCCeeeHHHHHHHHHHc-CCEEEEEee-eEEEeCCCHHHHHHHHHHH
Confidence 99999998876 55543 111 1 12235556666665554 244455443 4688999999998886664
|
|
| >cd02509 GDP-M1P_Guanylyltransferase GDP-M1P_Guanylyltransferase catalyzes the formation of GDP-Mannose | Back alignment and domain information |
|---|
Probab=99.32 E-value=4.9e-11 Score=118.79 Aligned_cols=190 Identities=14% Similarity=0.144 Sum_probs=116.4
Q ss_pred eEEEEcCCCCCcCC----CCCCccccccCCCCchHHHHHHHHHHhhhhcCCcccEEEecCCCChHHHHHHHHHhcCCCCc
Q 012172 81 VVLKLNGGLGTTMG----CTGPKSVIEVRNGLTFLDLIVIQIENLNAKYGCNVPLLLMNSFNTHDDTSKIIEKYSKSNVE 156 (469)
Q Consensus 81 avviLAGG~GTRmg----~~~PK~l~~v~~gks~L~~~~~~i~~l~~~~~~~iplviMtS~~t~e~t~~~~~~~~g~~~~ 156 (469)
.+||||||.||||. ...||.++++.+++|||++.++++..+.. .-.++|.|+....+.+++++++ .. ..
T Consensus 2 ~~vILAgG~GtRl~PlS~~~~PK~ll~l~g~~~li~~~l~~l~~~~~----~~~i~vvt~~~~~~~v~~~l~~-~~--~~ 74 (274)
T cd02509 2 YPVILAGGSGTRLWPLSRESYPKQFLKLFGDKSLLQQTLDRLKGLVP----PDRILVVTNEEYRFLVREQLPE-GL--PE 74 (274)
T ss_pred EEEEEcccccccCCcCCCCCCCceEeEcCCCCcHHHHHHHHHhcCCC----CCcEEEEechHHHHHHHHHHhh-cC--CC
Confidence 47999999999996 57899999994349999999999987731 1256666666444556666653 11 12
Q ss_pred eEEEEecCcceecCCCCcccCCCCCCCCcccccCCCcccchhccccchHHHHHH-cCCcEEEEEeCcccccc-ccH-HHH
Q 012172 157 IHTFNQSQYPRLCADDFVPLPCKGKTDKDGWYPPGHGDVFPSLMNSGKLDALIS-QGKEYVFAANSDNLGAI-VDL-KIL 233 (469)
Q Consensus 157 i~~f~Q~~~P~l~~~~~~~~~~~~~~~~~~~~P~GhGd~~~~L~~sg~L~~l~~-~G~~~v~v~n~DNL~~~-~dp-~~L 233 (469)
+.++.|. .+.|+|+...... ..+.. .+-++++|+++|.+... .+. ..+
T Consensus 75 ~~ii~ep------------------------~~~gTa~ai~~a~-----~~~~~~~~~~~vlVl~~D~~i~~~~~f~~~l 125 (274)
T cd02509 75 ENIILEP------------------------EGRNTAPAIALAA-----LYLAKRDPDAVLLVLPSDHLIEDVEAFLKAV 125 (274)
T ss_pred ceEEECC------------------------CCCCcHHHHHHHH-----HHHHhcCCCCeEEEecchhcccCHHHHHHHH
Confidence 3333222 2577888753321 12222 23468999999995532 221 123
Q ss_pred HHHH---HcCCcceEEEeeeccCCCcceEEEEeC---C---ee-EEEEeccCChhhhhhccccccccEEEEEeEEEeHHH
Q 012172 234 NHLI---QNKNEYCMEVTPKTLADVKGGTLISYE---G---KV-QLLEIAQVPDEHVNEFKSIEKFKIFNTNNLWVNLKA 303 (469)
Q Consensus 234 g~~~---~~~~~~~~~v~~k~~~~~~~G~iv~~~---g---~~-~ivEy~~~~~e~~~~~~~~~~~~~~Nt~~~~~~l~~ 303 (469)
..+. +.+..+++.+.+ +.+..+||.+...+ | ++ +++|..+....+ .+-. .+-.+.|+|+|+|+.+.
T Consensus 126 ~~~~~~~~~~~~vt~gi~p-~~~~t~yGyI~~~~~~~~~~~~V~~f~EKP~~~~a~--~~~~-~g~~~wNsGiyi~~~~~ 201 (274)
T cd02509 126 KKAVEAAEEGYLVTFGIKP-TRPETGYGYIEAGEKLGGGVYRVKRFVEKPDLETAK--EYLE-SGNYLWNSGIFLFRAKT 201 (274)
T ss_pred HHHHHHHHcCCEEEEEeee-cCCCCCeEEEEeCCcCCCCceEEeEEEECcChHHHH--HHhh-cCCeEEECceeeeeHHH
Confidence 2222 234444444444 46778899987642 2 44 467765543322 1100 12236799999999999
Q ss_pred HHHHHHh
Q 012172 304 IKRLVEA 310 (469)
Q Consensus 304 L~~~l~~ 310 (469)
+.+.+++
T Consensus 202 l~~~l~~ 208 (274)
T cd02509 202 FLEELKK 208 (274)
T ss_pred HHHHHHH
Confidence 9999876
|
GDP-mannose-1-phosphate guanylyltransferase, also called GDP-mannose pyrophosphorylase (GDP-MP), catalyzes the formation of GDP-Mannose from mannose-1-phosphate and GTP. Mannose is a key monosaccharide for glycosylation of proteins and lipids. GDP-Mannose is the activated donor for mannosylation of various biomolecules. This enzyme is known to be bifunctional, as both mannose-6-phosphate isomerase and mannose-1-phosphate guanylyltransferase. This CD covers the N-terminal GDP-mannose-1-phosphate guanylyltransferase domain, whereas the isomerase function is located at the C-terminal half. GDP-MP is a member of the nucleotidyltransferase family of enzymes. |
| >cd02541 UGPase_prokaryotic Prokaryotic UGPase catalyses the synthesis of UDP-glucose | Back alignment and domain information |
|---|
Probab=99.30 E-value=2.6e-10 Score=112.55 Aligned_cols=229 Identities=14% Similarity=0.098 Sum_probs=137.6
Q ss_pred eEEEEcCCCCCcCCC---CCCccccccCCCCchHHHHHHHHHHhhhhcCCcccEEEecCCCChHHHHHHHHHhcC-----
Q 012172 81 VVLKLNGGLGTTMGC---TGPKSVIEVRNGLTFLDLIVIQIENLNAKYGCNVPLLLMNSFNTHDDTSKIIEKYSK----- 152 (469)
Q Consensus 81 avviLAGG~GTRmg~---~~PK~l~~v~~gks~L~~~~~~i~~l~~~~~~~iplviMtS~~t~e~t~~~~~~~~g----- 152 (469)
-+||||||.||||+. ..||.|+|+ .|+|++++.++++.+.+-+ .++|.|++ ..+.+.++|.....
T Consensus 2 kaiIlAaG~gtRl~plt~~~pK~llpv-~gkpli~~~l~~l~~~gi~-----~i~iv~~~-~~~~i~~~~~~~~~~~~~~ 74 (267)
T cd02541 2 KAVIPAAGLGTRFLPATKAIPKEMLPI-VDKPVIQYIVEEAVAAGIE-----DIIIVTGR-GKRAIEDHFDRSYELEETL 74 (267)
T ss_pred eEEEEcCCCCccCCCcccCCCceeeEE-CCEEHHHHHHHHHHHCCCC-----EEEEEeCC-chHHHHHHhCCcHHHHHHH
Confidence 479999999999984 789999999 8999999999999875422 44555565 66778888753110
Q ss_pred --C--------------CCceEEEEecCcceecCCCCcccCCCCCCCCcccccCCCcccchhccccchHHHHHHcCCcEE
Q 012172 153 --S--------------NVEIHTFNQSQYPRLCADDFVPLPCKGKTDKDGWYPPGHGDVFPSLMNSGKLDALISQGKEYV 216 (469)
Q Consensus 153 --~--------------~~~i~~f~Q~~~P~l~~~~~~~~~~~~~~~~~~~~P~GhGd~~~~L~~sg~L~~l~~~G~~~v 216 (469)
. +..+.+.. +..|.|+|+.+.... ..+. .+.+
T Consensus 75 ~~~~~~~~~~~~~~~~~~~~i~~~~------------------------~~~~~Gt~~al~~~~------~~i~--~~~~ 122 (267)
T cd02541 75 EKKGKTDLLEEVRIISDLANIHYVR------------------------QKEPLGLGHAVLCAK------PFIG--DEPF 122 (267)
T ss_pred HhcccHHHhhhhhcccCCceEEEEE------------------------cCCCCChHHHHHHHH------HHhC--CCce
Confidence 0 00112111 234689988764332 2222 2678
Q ss_pred EEEeCcccccccc---HHHHHHHHHcCCcceEEEeee-ccCCCcceEEEEeC-----Cee-EEEEeccCChhhhhhcccc
Q 012172 217 FAANSDNLGAIVD---LKILNHLIQNKNEYCMEVTPK-TLADVKGGTLISYE-----GKV-QLLEIAQVPDEHVNEFKSI 286 (469)
Q Consensus 217 ~v~n~DNL~~~~d---p~~Lg~~~~~~~~~~~~v~~k-~~~~~~~G~iv~~~-----g~~-~ivEy~~~~~e~~~~~~~~ 286 (469)
+|.++|++....| -.++..+...+.+. +.+... ......+|++..++ |++ .++|-... +.
T Consensus 123 lv~~gD~~~~~~~~~~~~l~~~~~~~~~~~-~~~~~~~~~~~~~~g~v~~d~~~~~~~~v~~~~Ekp~~--~~------- 192 (267)
T cd02541 123 AVLLGDDLIDSKEPCLKQLIEAYEKTGASV-IAVEEVPPEDVSKYGIVKGEKIDGDVFKVKGLVEKPKP--EE------- 192 (267)
T ss_pred EEEECCeEEeCCchHHHHHHHHHHHhCCCE-EEEEEcChhcCccceEEEeecCCCCceEEeEEEECCCC--CC-------
Confidence 8999999554332 24556565555543 222221 12456688876542 244 35553221 11
Q ss_pred ccccEEEEEeEEEeHHHHHHHHHhcccccccccCCCcCCCcceehhHHHhhhHhhhcccceeEeecCccccccCCchhHH
Q 012172 287 EKFKIFNTNNLWVNLKAIKRLVEADALKMEIIPNPKEVDGIKVLQLETAAGAAIRFFDHAIGCNVHRSRFLPVKATSDLL 366 (469)
Q Consensus 287 ~~~~~~Nt~~~~~~l~~L~~~l~~~~~~lp~~~n~K~~~g~~~iqle~~~~d~~~~~~~~~~v~v~r~eF~pVKn~~dL~ 366 (469)
..-...|+|+|+|+.+.+..+... .+ + ..++ +.+..++..++..- ++.++.++ ..+.-|.+..++.
T Consensus 193 ~~~~~~~~Giyi~~~~~~~~l~~~--------~~-~-~~~e--~~~~d~i~~l~~~~-~v~~~~~~-g~w~digt~~~y~ 258 (267)
T cd02541 193 APSNLAIVGRYVLTPDIFDILENT--------KP-G-KGGE--IQLTDAIAKLLEEE-PVYAYVFE-GKRYDCGNKLGYL 258 (267)
T ss_pred CCCceEEEEEEEcCHHHHHHHHhC--------CC-C-CCCc--EEHHHHHHHHHhcC-CEEEEEee-eEEEeCCCHHHHH
Confidence 112467999999999876554221 11 1 1122 33445555455442 56666665 4689999999998
Q ss_pred HHHHHH
Q 012172 367 LVQSDL 372 (469)
Q Consensus 367 ~~~~~~ 372 (469)
.+..++
T Consensus 259 ~a~~~~ 264 (267)
T cd02541 259 KATVEF 264 (267)
T ss_pred HHHHHH
Confidence 887765
|
Prokaryotic UDP-Glucose Pyrophosphorylase (UGPase) catalyzes a reversible production of UDP-Glucose and pyrophosphate (PPi) from glucose-1-phosphate and UTP. UDP-glucose plays pivotal roles in galactose utilization, in glycogen synthesis, and in the synthesis of the carbohydrate moieties of glycolipids , glycoproteins , and proteoglycans. UGPase is found in both prokaryotes and eukaryotes, although prokaryotic and eukaryotic forms of UGPase catalyze the same reaction, they share low sequence similarity. |
| >cd02524 G1P_cytidylyltransferase G1P_cytidylyltransferase catalyzes the production of CDP-D-Glucose | Back alignment and domain information |
|---|
Probab=99.28 E-value=6.4e-10 Score=109.14 Aligned_cols=235 Identities=14% Similarity=0.108 Sum_probs=137.4
Q ss_pred EEEEcCCCCCcCCC---CCCccccccCCCCchHHHHHHHHHHhhhhcCCcccEEEecCCCChHHHHHHHHHhcCCCCceE
Q 012172 82 VLKLNGGLGTTMGC---TGPKSVIEVRNGLTFLDLIVIQIENLNAKYGCNVPLLLMNSFNTHDDTSKIIEKYSKSNVEIH 158 (469)
Q Consensus 82 vviLAGG~GTRmg~---~~PK~l~~v~~gks~L~~~~~~i~~l~~~~~~~iplviMtS~~t~e~t~~~~~~~~g~~~~i~ 158 (469)
+|+||||.||||+. +.||.|+|| .|+|++++.++.+...+-+ .++|.+++ ..+.++++++++.....++.
T Consensus 1 aiilaaG~g~Rl~plt~~~pK~llpv-~~~p~i~~~~~~~~~~gi~-----~i~iv~~~-~~~~i~~~~~~~~~~~~~~~ 73 (253)
T cd02524 1 VVILAGGLGTRLSEETELKPKPMVEI-GGRPILWHIMKIYSHYGHN-----DFILCLGY-KGHVIKEYFLNYFLHNSDVT 73 (253)
T ss_pred CEEEecCCccccCCccCCCCceEEEE-CCEEHHHHHHHHHHhCCCc-----eEEEECCC-CHHHHHHHHHhhhhhcCcee
Confidence 48999999999974 689999999 9999999999998876422 34444455 77889999987432111233
Q ss_pred EEEecCcceecCCCCcccCCC-CCCCC----cccccCCCcccchhccccchHHHHHHcCC-cEEEEEeCccccccccHHH
Q 012172 159 TFNQSQYPRLCADDFVPLPCK-GKTDK----DGWYPPGHGDVFPSLMNSGKLDALISQGK-EYVFAANSDNLGAIVDLKI 232 (469)
Q Consensus 159 ~f~Q~~~P~l~~~~~~~~~~~-~~~~~----~~~~P~GhGd~~~~L~~sg~L~~l~~~G~-~~v~v~n~DNL~~~~dp~~ 232 (469)
+-.|+.- +-...+ ..++. ....|.|+|+.+.... ..+ +. ++++|+|+|++....--.+
T Consensus 74 ~~~~~~~--------~~~~~~~~~~~~~~~~~~~~~~~t~~al~~a~------~~~--~~~~~~lv~~gD~i~~~dl~~l 137 (253)
T cd02524 74 IDLGTNR--------IELHNSDIEDWKVTLVDTGLNTMTGGRLKRVR------RYL--GDDETFMLTYGDGVSDVNINAL 137 (253)
T ss_pred Eeecccc--------eeeecccccccceeecccCcccccHHHHHHHH------Hhc--CCCCeEEEEcCCEEECCCHHHH
Confidence 3222100 000000 00011 1123677877743221 112 22 7999999999654321355
Q ss_pred HHHHHHcCCcceEEEeeeccCCCcceEEEEe-CCee-EEEEeccCChhhhhhccccccccEEEEEeEEEeHHHHHHHHHh
Q 012172 233 LNHLIQNKNEYCMEVTPKTLADVKGGTLISY-EGKV-QLLEIAQVPDEHVNEFKSIEKFKIFNTNNLWVNLKAIKRLVEA 310 (469)
Q Consensus 233 Lg~~~~~~~~~~~~v~~k~~~~~~~G~iv~~-~g~~-~ivEy~~~~~e~~~~~~~~~~~~~~Nt~~~~~~l~~L~~~l~~ 310 (469)
+.++...++++.+.++. ++..+|++..+ +|++ .++|..+.+ -...|+|++.++.+.++.+ .+
T Consensus 138 l~~h~~~~~~~tl~~~~---~~~~~g~v~~d~~g~V~~~~ekp~~~------------~~~i~~Giyi~~~~l~~~l-~~ 201 (253)
T cd02524 138 IEFHRSHGKLATVTAVH---PPGRFGELDLDDDGQVTSFTEKPQGD------------GGWINGGFFVLEPEVFDYI-DG 201 (253)
T ss_pred HHHHHHcCCCEEEEEec---CCCcccEEEECCCCCEEEEEECCCCC------------CceEEEEEEEECHHHHHhh-cc
Confidence 66666667777655442 45667876653 5666 466643221 1358999999998876432 22
Q ss_pred cccccccccCCCcCCCcceehhHHHhhhHhhhcccceeEeecCccccccCCchhHHHHHHHHH
Q 012172 311 DALKMEIIPNPKEVDGIKVLQLETAAGAAIRFFDHAIGCNVHRSRFLPVKATSDLLLVQSDLY 373 (469)
Q Consensus 311 ~~~~lp~~~n~K~~~g~~~iqle~~~~d~~~~~~~~~~v~v~r~eF~pVKn~~dL~~~~~~~~ 373 (469)
. + . ...+.++...++- .++.+++++- .+.-|.+..++..++..+.
T Consensus 202 ~----------~---~---~~~~d~l~~li~~-~~v~~~~~~g-~w~~I~t~~~~~~~~~~~~ 246 (253)
T cd02524 202 D----------D---T---VFEREPLERLAKD-GELMAYKHTG-FWQCMDTLRDKQTLEELWN 246 (253)
T ss_pred c----------c---c---hhhHHHHHHHHhc-CCEEEEecCC-EEEeCcCHHHHHHHHHHHH
Confidence 0 1 0 0112333333332 1344445433 5788999999999886653
|
Alpha-D-Glucose-1-phosphate Cytidylyltransferase catalyzes the production of CDP-D-Glucose from alpha-D-Glucose-1-phosphate and MgCTP as substrate. CDP-D-Glucose is the precursor for synthesizing four of the five naturally occurring 3,6-dideoxy sugars-abequose (3,6-dideoxy-D-Xylo-hexose), ascarylose (3,6-dideoxy-L-arabino-hexose), paratose (3,6-dideoxy-D-ribohexose), and tyvelose (3,6-dideoxy-D-arabino-hexose. Deoxysugars are ubiquitous in nature where they function in a variety of biological processes, including cell adhesion, immune response, determination of ABO blood groups, fertilization, antibiotic function, and microbial pathogenicity. |
| >cd02523 PC_cytidylyltransferase Phosphocholine cytidylyltransferases catalyze the synthesis of CDP-choline | Back alignment and domain information |
|---|
Probab=99.27 E-value=1.5e-10 Score=111.57 Aligned_cols=223 Identities=17% Similarity=0.193 Sum_probs=131.7
Q ss_pred EEEEcCCCCCcCCC---CCCccccccCCCCchHHHHHHHHHHhhhhcCCcccEEEecCCCChHHHHHHHHHhcCCCCceE
Q 012172 82 VLKLNGGLGTTMGC---TGPKSVIEVRNGLTFLDLIVIQIENLNAKYGCNVPLLLMNSFNTHDDTSKIIEKYSKSNVEIH 158 (469)
Q Consensus 82 vviLAGG~GTRmg~---~~PK~l~~v~~gks~L~~~~~~i~~l~~~~~~~iplviMtS~~t~e~t~~~~~~~~g~~~~i~ 158 (469)
+||||||+||||+- ..||.|+|+ .|+|++++.++++...+-+ .+++.+++ ..+.+.+++.++ ..+.
T Consensus 1 aiIlAaG~g~Rl~~lt~~~pK~l~~~-~g~~li~~~l~~l~~~gi~-----~i~vv~~~-~~~~~~~~~~~~----~~~~ 69 (229)
T cd02523 1 AIILAAGRGSRLRPLTEDRPKCLLEI-NGKPLLERQIETLKEAGID-----DIVIVTGY-KKEQIEELLKKY----PNIK 69 (229)
T ss_pred CEEEeccCccccchhhCCCCceeeeE-CCEEHHHHHHHHHHHCCCc-----eEEEEecc-CHHHHHHHHhcc----CCeE
Confidence 48999999999985 569999999 9999999999998876422 34555565 677777777642 1244
Q ss_pred EEEecCcceecCCCCcccCCCCCCCCcccccCCCcccchhccccchHHHHHHcCCcEEEEEeCccccccccHHHHHHHHH
Q 012172 159 TFNQSQYPRLCADDFVPLPCKGKTDKDGWYPPGHGDVFPSLMNSGKLDALISQGKEYVFAANSDNLGAIVDLKILNHLIQ 238 (469)
Q Consensus 159 ~f~Q~~~P~l~~~~~~~~~~~~~~~~~~~~P~GhGd~~~~L~~sg~L~~l~~~G~~~v~v~n~DNL~~~~dp~~Lg~~~~ 238 (469)
+..+.. +.+.|.++.+.... +.+ .++++|+++|++. ++.++..+.+
T Consensus 70 ~~~~~~----------------------~~~~g~~~s~~~~~-----~~~----~~~~lv~~~D~~~---~~~~~~~~~~ 115 (229)
T cd02523 70 FVYNPD----------------------YAETNNIYSLYLAR-----DFL----DEDFLLLEGDVVF---DPSILERLLS 115 (229)
T ss_pred EEeCcc----------------------hhhhCcHHHHHHHH-----HHc----CCCEEEEeCCEec---CHHHHHHHHc
Confidence 333321 12466666543221 222 3789999999964 4456777877
Q ss_pred cCCcceEEEeeecc-CCCcceEEEEeCCee-EEEEeccCChhhhhhccccccccEEEEEeEEEeHHHHHHHHHhcccccc
Q 012172 239 NKNEYCMEVTPKTL-ADVKGGTLISYEGKV-QLLEIAQVPDEHVNEFKSIEKFKIFNTNNLWVNLKAIKRLVEADALKME 316 (469)
Q Consensus 239 ~~~~~~~~v~~k~~-~~~~~G~iv~~~g~~-~ivEy~~~~~e~~~~~~~~~~~~~~Nt~~~~~~l~~L~~~l~~~~~~lp 316 (469)
.+.+.++.+.+... ....++.....+|++ .++|...-+ ......|+|++.++.+.+..+.+.
T Consensus 116 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~k~~~~----------~~~~~~~~Giy~~~~~~~~~l~~~------ 179 (229)
T cd02523 116 SPADNAILVDKKTKEWEDEYVKDLDDAGVLLGIISKAKNL----------EEIQGEYVGISKFSPEDADRLAEA------ 179 (229)
T ss_pred CCCCCeEEEccCcccccccceeeecCccceEeecccCCCc----------chhceEEEeEEEECHHHHHHHHHH------
Confidence 78887776654221 122233322222333 455533222 112468999999999998776542
Q ss_pred cccCCCcCCCcceehhHHHhhhHhhhcccceeEeecCccccccCCchhHHHH
Q 012172 317 IIPNPKEVDGIKVLQLETAAGAAIRFFDHAIGCNVHRSRFLPVKATSDLLLV 368 (469)
Q Consensus 317 ~~~n~K~~~g~~~iqle~~~~d~~~~~~~~~~v~v~r~eF~pVKn~~dL~~~ 368 (469)
+...... +.....++.++...+.. .+..+..+....+.-|.+..|+..|
T Consensus 180 -~~~~~~~-~~~~~~~~d~i~~l~~~-~~~~v~~~~~~~w~dI~~~ed~~~a 228 (229)
T cd02523 180 -LEELIEA-GRVNLYYEDALQRLISE-EGVKVKDISDGFWYEIDDLEDLERA 228 (229)
T ss_pred -HHHHHhc-ccccccHHHHHHHHHhh-cCeeEEEcCCCCEEEeCCHHHHHhh
Confidence 1110001 11223345666655542 1222223333456778888887665
|
This family contains proteins similar to prokaryotic phosphocholine (P-cho) cytidylyltransferases. Phosphocholine (PC) cytidylyltransferases catalyze the transfer of a cytidine monophosphate from CTP to phosphocholine to form CDP-choline. PC is the most abundant phospholipid in eukaryotic membranes and it is also important in prokaryotic membranes. For pathogenic prokaryotes, the cell surface PC facilitates the interaction with host surface and induces attachment and invasion. In addition cell wall PC serves as scaffold for a group of choline-binding proteins that are secreted from the cells. Phosphocholine (PC) cytidylyltransferase is a key enzyme in the prokaryotic choline metabolism pathway. It has been hypothesized to consist of a choline transport system, a choline kinase, CTP:phosphocholine cytidylyltransferase, and a choline phosphotransferase that transfers P-Cho from CDP |
| >COG1209 RfbA dTDP-glucose pyrophosphorylase [Cell envelope biogenesis, outer membrane] | Back alignment and domain information |
|---|
Probab=99.27 E-value=6.5e-10 Score=108.25 Aligned_cols=229 Identities=15% Similarity=0.145 Sum_probs=147.7
Q ss_pred EEEEcCCCCCcCC---CCCCccccccCCCCchHHHHHHHHHHhhhhcCCcccEEEecCCCChHHHHHHHHHhcCCCCceE
Q 012172 82 VLKLNGGLGTTMG---CTGPKSVIEVRNGLTFLDLIVIQIENLNAKYGCNVPLLLMNSFNTHDDTSKIIEKYSKSNVEIH 158 (469)
Q Consensus 82 vviLAGG~GTRmg---~~~PK~l~~v~~gks~L~~~~~~i~~l~~~~~~~iplviMtS~~t~e~t~~~~~~~~g~~~~i~ 158 (469)
-||||||.||||. ...||.|+|| .+|||++|.++++...+-+ +|-+++ ++.+....++++..-.....+++
T Consensus 3 giILAgG~GTRL~PlT~~~~KqLlpV-~~KPmi~y~l~~L~~aGI~---dI~II~--~~~~~~~~~~llGdgs~~gv~it 76 (286)
T COG1209 3 GVILAGGSGTRLRPLTRVVPKQLLPV-YDKPMIYYPLETLMLAGIR---DILIVV--GPEDKPTFKELLGDGSDFGVDIT 76 (286)
T ss_pred cEEecCcCccccccccccCCccccee-cCcchhHhHHHHHHHcCCc---eEEEEe--cCCchhhhhhhhcCccccCcceE
Confidence 4899999999997 5889999999 9999999999999998754 454444 56455555555543111235788
Q ss_pred EEEecCcceecCCCCcccCCCCCCCCcccccCCCcccchhccccchHHHHHHcCCcEEEEEeCccccccccHHHHHHHHH
Q 012172 159 TFNQSQYPRLCADDFVPLPCKGKTDKDGWYPPGHGDVFPSLMNSGKLDALISQGKEYVFAANSDNLGAIVDLKILNHLIQ 238 (469)
Q Consensus 159 ~f~Q~~~P~l~~~~~~~~~~~~~~~~~~~~P~GhGd~~~~L~~sg~L~~l~~~G~~~v~v~n~DNL~~~~dp~~Lg~~~~ 238 (469)
+..|.+ |.|-++++.. -+++. |-+.+.++-+||+..---..++..+.+
T Consensus 77 Y~~Q~~------------------------p~GlA~Av~~------a~~fv--~~~~f~l~LGDNi~~~~l~~~~~~~~~ 124 (286)
T COG1209 77 YAVQPE------------------------PDGLAHAVLI------AEDFV--GDDDFVLYLGDNIFQDGLSELLEHFAE 124 (286)
T ss_pred EEecCC------------------------CCcHHHHHHH------HHhhc--CCCceEEEecCceeccChHHHHHHHhc
Confidence 888883 7898888642 23444 347889999999443322344544444
Q ss_pred cCCcceEEEeeeccCCCcceEEEEe-CCee-EEEEeccCChhhhhhccccccccEEEEEeEEEeHHHHHHHHHhcccccc
Q 012172 239 NKNEYCMEVTPKTLADVKGGTLISY-EGKV-QLLEIAQVPDEHVNEFKSIEKFKIFNTNNLWVNLKAIKRLVEADALKME 316 (469)
Q Consensus 239 ~~~~~~~~v~~k~~~~~~~G~iv~~-~g~~-~ivEy~~~~~e~~~~~~~~~~~~~~Nt~~~~~~l~~L~~~l~~~~~~lp 316 (469)
.+.+..+ ...+-++|+.+|++..+ +|++ .|+|--+.|+. .+.=+|.|+++-+...-+ +.
T Consensus 125 ~~~ga~i-~~~~V~dP~rfGV~e~d~~~~v~~l~EKP~~P~S-----------NlAvtGlY~~d~~Vf~~~-~~------ 185 (286)
T COG1209 125 EGSGATI-LLYEVDDPSRYGVVEFDEDGKVIGLEEKPKEPKS-----------NLAVTGLYFYDPSVFEAI-KQ------ 185 (286)
T ss_pred cCCCcEE-EEEEcCCcccceEEEEcCCCcEEEeEECCCCCCC-----------ceeEEEEEEeChHHHHHH-Hc------
Confidence 3333322 23444688999988775 6776 47776555544 478899999998665432 21
Q ss_pred cccCCCcCC-CcceehhHHHhhhHhhhcccceeEeecCccccccCCchhHHHHHHHHHH
Q 012172 317 IIPNPKEVD-GIKVLQLETAAGAAIRFFDHAIGCNVHRSRFLPVKATSDLLLVQSDLYT 374 (469)
Q Consensus 317 ~~~n~K~~~-g~~~iqle~~~~d~~~~~~~~~~v~v~r~eF~pVKn~~dL~~~~~~~~~ 374 (469)
-|... ||..| ..++...+..-.....+.... .+.=+-+.++|+.|.+-...
T Consensus 186 ----ikPS~RGElEI--Td~i~~~i~~G~~~~~~~~~G-~WlDtGt~~slleA~~~i~~ 237 (286)
T COG1209 186 ----IKPSARGELEI--TDAIDLYIEKGYLVVAILIRG-WWLDTGTPESLLEANNFVRT 237 (286)
T ss_pred ----CCCCCCCceEe--hHHHHHHHHcCcEEEEEEccc-eEEecCChhhHHHHHHHHHH
Confidence 12111 55544 344444444443333333333 67888888998887666654
|
|
| >TIGR01099 galU UTP-glucose-1-phosphate uridylyltransferase | Back alignment and domain information |
|---|
Probab=99.27 E-value=1.4e-10 Score=113.94 Aligned_cols=195 Identities=10% Similarity=0.069 Sum_probs=112.3
Q ss_pred eEEEEcCCCCCcCCC---CCCccccccCCCCchHHHHHHHHHHhhhhcCCcccEEEecCCCChHHHHHHHHHhcCCCCce
Q 012172 81 VVLKLNGGLGTTMGC---TGPKSVIEVRNGLTFLDLIVIQIENLNAKYGCNVPLLLMNSFNTHDDTSKIIEKYSKSNVEI 157 (469)
Q Consensus 81 avviLAGG~GTRmg~---~~PK~l~~v~~gks~L~~~~~~i~~l~~~~~~~iplviMtS~~t~e~t~~~~~~~~g~~~~i 157 (469)
.+||||||.||||+. ..||.|+|+ .|+|++++.++.+...+-+ .++|.|++ ..+.+.++|.+......+.
T Consensus 2 ~avIlAaG~gtRl~plt~~~pK~llpi-~g~pli~~~l~~l~~~gi~-----~v~iv~~~-~~~~i~~~~~~~~~~~~~~ 74 (260)
T TIGR01099 2 KAVIPAAGLGTRFLPATKAIPKEMLPI-VDKPLIQYVVEEAVEAGIE-----DILIVTGR-GKRAIEDHFDTSYELEHQL 74 (260)
T ss_pred eEEEEcccCcccCCCcccCCCceeEEE-CCEEHHHHHHHHHHhCCCC-----EEEEEeCC-cHHHHHHHhcccHHHHHHH
Confidence 479999999999986 789999999 8999999999998875422 45566666 6777888885310000000
Q ss_pred EEEEecCcceecC----CCCcccCCCCCCCCcccccCCCcccchhccccchHHHHHHcCCcEEEEEeCccccccc--c-H
Q 012172 158 HTFNQSQYPRLCA----DDFVPLPCKGKTDKDGWYPPGHGDVFPSLMNSGKLDALISQGKEYVFAANSDNLGAIV--D-L 230 (469)
Q Consensus 158 ~~f~Q~~~P~l~~----~~~~~~~~~~~~~~~~~~P~GhGd~~~~L~~sg~L~~l~~~G~~~v~v~n~DNL~~~~--d-p 230 (469)
. .++....++. .....+. ......|.|+|+.+.... + ++ +-+.++|.++|++.... | -
T Consensus 75 ~--~~~~~~~~~~~~~~~~~~~i~-----~~~~~~~~G~~~al~~~~-----~-~~--~~~~~lv~~gD~~~~~~~~~~~ 139 (260)
T TIGR01099 75 E--KRGKEELLKEVRSISPLATIF-----YVRQKEQKGLGHAVLCAE-----P-FV--GDEPFAVILGDDIVVSEEPALK 139 (260)
T ss_pred H--hhhhHHHHHHhhhccccceEE-----EEecCCCCCHHHHHHHHH-----H-hh--CCCCEEEEeccceecCCcHHHH
Confidence 0 0000000000 0000000 001224688988754332 1 22 34678999999944322 3 2
Q ss_pred HHHHHHHHcCCcceEEEe-eeccCCCcceEEEEe-----CCee-EEEEeccCChhhhhhccccccccEEEEEeEEEeHHH
Q 012172 231 KILNHLIQNKNEYCMEVT-PKTLADVKGGTLISY-----EGKV-QLLEIAQVPDEHVNEFKSIEKFKIFNTNNLWVNLKA 303 (469)
Q Consensus 231 ~~Lg~~~~~~~~~~~~v~-~k~~~~~~~G~iv~~-----~g~~-~ivEy~~~~~e~~~~~~~~~~~~~~Nt~~~~~~l~~ 303 (469)
.++.++.+++++. +.+. ....+...+|++..+ +|++ .++|..... + ..-...|+|+|+|+.+.
T Consensus 140 ~l~~~~~~~~~~i-i~~~~~~~~~~~~~g~v~~d~~~~~~~~v~~~~Ekp~~~--~-------~~~~~~~~Giyi~~~~~ 209 (260)
T TIGR01099 140 QMIDLYEKYGCSI-IAVEEVPKEEVSKYGVIDGEGVEEGLYEIKDMVEKPKPE--E-------APSNLAIVGRYVLTPDI 209 (260)
T ss_pred HHHHHHHHhCCCE-EEEEECChhhcccCceEEeccccCCceeEEEEEECCCCC--C-------CCCceEEEEEEECCHHH
Confidence 5566666667765 3232 222355678887653 2455 466653211 1 11246899999999987
Q ss_pred HHHH
Q 012172 304 IKRL 307 (469)
Q Consensus 304 L~~~ 307 (469)
+..+
T Consensus 210 ~~~l 213 (260)
T TIGR01099 210 FDLL 213 (260)
T ss_pred HHHH
Confidence 6655
|
Built to distinquish between the highly similar genes galU and galF |
| >cd04197 eIF-2B_epsilon_N The N-terminal domain of epsilon subunit of the eIF-2B is a subfamily of glycosyltransferase 2 | Back alignment and domain information |
|---|
Probab=99.26 E-value=8e-11 Score=112.86 Aligned_cols=183 Identities=11% Similarity=0.146 Sum_probs=110.1
Q ss_pred eEEEEcCCCCCcCC---CCCCccccccCCCCchHHHHHHHHHHhhhhcCCcccEEEecCCCChHHHHHHHHHhcC--CC-
Q 012172 81 VVLKLNGGLGTTMG---CTGPKSVIEVRNGLTFLDLIVIQIENLNAKYGCNVPLLLMNSFNTHDDTSKIIEKYSK--SN- 154 (469)
Q Consensus 81 avviLAGG~GTRmg---~~~PK~l~~v~~gks~L~~~~~~i~~l~~~~~~~iplviMtS~~t~e~t~~~~~~~~g--~~- 154 (469)
-+||||||.||||+ ...||+|+|+ .|+|++++.++.+.+.+-+ .++|.|++ ..+.++++++++.. ..
T Consensus 2 ~aiIla~G~g~Rl~plt~~~pK~llpi-~g~piI~~~l~~l~~~Gi~-----~I~iv~~~-~~~~i~~~l~~~~~~~~~~ 74 (217)
T cd04197 2 QAVVLADSFNRRFRPLTKEKPRCLLPL-ANVPLIDYTLEFLALNGVE-----EVFVFCCS-HSDQIKEYIEKSKWSKPKS 74 (217)
T ss_pred eEEEEcCCCcccccccccCCCceeeEE-CCEehHHHHHHHHHHCCCC-----eEEEEeCC-CHHHHHHHHhhcccccccc
Confidence 36999999999998 4789999999 9999999999999886422 34455565 67889999987431 11
Q ss_pred --CceEEEEecCcceecCCCCcccCCCCCCCCcccccCCCcccchhccccchHHHHHHcCCcEEEEEeCccccccccH-H
Q 012172 155 --VEIHTFNQSQYPRLCADDFVPLPCKGKTDKDGWYPPGHGDVFPSLMNSGKLDALISQGKEYVFAANSDNLGAIVDL-K 231 (469)
Q Consensus 155 --~~i~~f~Q~~~P~l~~~~~~~~~~~~~~~~~~~~P~GhGd~~~~L~~sg~L~~l~~~G~~~v~v~n~DNL~~~~dp-~ 231 (469)
..+.+..|. .+.|.|+++..+...+.+ .+++++.++|++... |. .
T Consensus 75 ~~~~i~~~~~~------------------------~~~~~~~al~~~~~~~~~-------~~~flv~~gD~i~~~-dl~~ 122 (217)
T cd04197 75 SLMIVIIIMSE------------------------DCRSLGDALRDLDAKGLI-------RGDFILVSGDVVSNI-DLKE 122 (217)
T ss_pred CcceEEEEeCC------------------------CcCccchHHHHHhhcccc-------CCCEEEEeCCeeecc-CHHH
Confidence 123322221 246788876544322211 256889999997653 53 5
Q ss_pred HHHHHHHc-----CCcceEEEeeeccCCC-----cceEEEEe-C-Cee-EEEEeccCChhhhhhc-c----c----cccc
Q 012172 232 ILNHLIQN-----KNEYCMEVTPKTLADV-----KGGTLISY-E-GKV-QLLEIAQVPDEHVNEF-K----S----IEKF 289 (469)
Q Consensus 232 ~Lg~~~~~-----~~~~~~~v~~k~~~~~-----~~G~iv~~-~-g~~-~ivEy~~~~~e~~~~~-~----~----~~~~ 289 (469)
++.++.+. ++++.+.+.+...+.. ..|++..+ + |++ .+.|....++...... . . .-..
T Consensus 123 ~l~~h~~~~~~~~~a~~t~~~~~~~~~~~~~~~~~~~vv~~d~~~~~v~~~~ekp~~~~~~~~~~~~~~~~~~~~~~i~~ 202 (217)
T cd04197 123 ILEEHKERRKKDKNAIMTMVLKEASPPHRTRRTGEEFVIAVDPKTSRLLHYEELPGSKYRSITDLPSELLGSNSEVEIRH 202 (217)
T ss_pred HHHHHHHhhccccCceEEEEEEeCCCccccccCCCceEEEEcCCCCcEEEEecccCCCCccccccCHHHhcCCCcEEEEC
Confidence 67777663 5555554433322221 24665543 3 565 3455444443211000 0 0 1134
Q ss_pred cEEEEEeEEEeHH
Q 012172 290 KIFNTNNLWVNLK 302 (469)
Q Consensus 290 ~~~Nt~~~~~~l~ 302 (469)
.+.++++|.|+.+
T Consensus 203 ~l~d~~iYi~~~~ 215 (217)
T cd04197 203 DLLDCHIDICSPD 215 (217)
T ss_pred CceecCEEEeCCC
Confidence 5678888888754
|
N-terminal domain of epsilon subunit of the eukaryotic translation initiation factor 2B (eIF-2B): eIF-2B is a guanine nucleotide-exchange factor which mediates the exchange of GDP (bound to initiation factor eIF2) for GTP, generating active eIF2.GTP complex. EIF2B is a complex multimeric protein consisting of five subunits named alpha, beta, gamma, delta and epsilon. Subunit epsilon shares sequence similarity with gamma subunit, and with a family of bifunctional nucleotide-binding enzymes such as ADP-glucose pyrophosphorylase, suggesting that epsilon subunit may play roles in nucleotide binding activity. In yeast, eIF2B gamma enhances the activity of eIF2B-epsilon leading to the idea that these subunits form the catalytic subcomplex. |
| >cd06422 NTP_transferase_like_1 NTP_transferase_like_1 is a member of the nucleotidyl transferase family | Back alignment and domain information |
|---|
Probab=99.22 E-value=5.8e-10 Score=106.83 Aligned_cols=173 Identities=15% Similarity=0.116 Sum_probs=106.1
Q ss_pred EEEEcCCCCCcCCC---CCCccccccCCCCchHHHHHHHHHHhhhhcCCcccEEEecCCCChHHHHHHHHHhcCCCCceE
Q 012172 82 VLKLNGGLGTTMGC---TGPKSVIEVRNGLTFLDLIVIQIENLNAKYGCNVPLLLMNSFNTHDDTSKIIEKYSKSNVEIH 158 (469)
Q Consensus 82 vviLAGG~GTRmg~---~~PK~l~~v~~gks~L~~~~~~i~~l~~~~~~~iplviMtS~~t~e~t~~~~~~~~g~~~~i~ 158 (469)
+||||||.||||+. ..||.|+|+ .|+|+++++++.+.+.+-+ .+++.++ +..+.+.+++.. ...+.++.
T Consensus 2 aiIlaaG~g~Rl~plt~~~pK~llpi-~g~~li~~~l~~l~~~gi~-----~i~iv~~-~~~~~i~~~~~~-~~~~~~i~ 73 (221)
T cd06422 2 AMILAAGLGTRMRPLTDTRPKPLVPV-AGKPLIDHALDRLAAAGIR-----RIVVNTH-HLADQIEAHLGD-SRFGLRIT 73 (221)
T ss_pred EEEEcCCCCCccccccCCCCCceeeE-CCEEHHHHHHHHHHHCCCC-----EEEEEcc-CCHHHHHHHHhc-ccCCceEE
Confidence 58999999999986 689999999 8999999999999886422 2344444 477888888864 11112233
Q ss_pred EEEecCcceecCCCCcccCCCCCCCCcccccCCCcccchhccccchHHHHHHcCCcEEEEEeCccccccccHHHHHHHHH
Q 012172 159 TFNQSQYPRLCADDFVPLPCKGKTDKDGWYPPGHGDVFPSLMNSGKLDALISQGKEYVFAANSDNLGAIVDLKILNHLIQ 238 (469)
Q Consensus 159 ~f~Q~~~P~l~~~~~~~~~~~~~~~~~~~~P~GhGd~~~~L~~sg~L~~l~~~G~~~v~v~n~DNL~~~~dp~~Lg~~~~ 238 (469)
+..|. ..+.|+|+.+.... + .+ +.++++|+++|++....-..++-.+.+
T Consensus 74 ~~~~~-----------------------~~~~g~~~~l~~~~-----~-~~--~~~~~lv~~~D~i~~~~~~~~~~~~~~ 122 (221)
T cd06422 74 ISDEP-----------------------DELLETGGGIKKAL-----P-LL--GDEPFLVVNGDILWDGDLAPLLLLHAW 122 (221)
T ss_pred EecCC-----------------------CcccccHHHHHHHH-----H-hc--CCCCEEEEeCCeeeCCCHHHHHHHHHh
Confidence 22111 02467776643221 1 22 227899999999665422344555542
Q ss_pred --cCCcceEEEeeeccCCCcceEEEEe-CCeeEEEEeccCChhhhhhccccccccEEEEEeEEEeHHHHHHH
Q 012172 239 --NKNEYCMEVTPKTLADVKGGTLISY-EGKVQLLEIAQVPDEHVNEFKSIEKFKIFNTNNLWVNLKAIKRL 307 (469)
Q Consensus 239 --~~~~~~~~v~~k~~~~~~~G~iv~~-~g~~~ivEy~~~~~e~~~~~~~~~~~~~~Nt~~~~~~l~~L~~~ 307 (469)
.++.+++.+++ ......+|++..+ +|++ .+..+=++ -...|+|++.++.+.+..+
T Consensus 123 ~~~~~~~~~~~~~-~~~~~~~g~v~~d~~~~v--~~~~~~~~-----------~~~~~~Giyi~~~~~l~~l 180 (221)
T cd06422 123 RMDALLLLLPLVR-NPGHNGVGDFSLDADGRL--RRGGGGAV-----------APFTFTGIQILSPELFAGI 180 (221)
T ss_pred ccCCCceEEEEEE-cCCCCCcceEEECCCCcE--eecccCCC-----------CceEEEEEEEEcHHHHhhC
Confidence 33444443333 3345677877654 4544 33221111 1468999999998877654
|
This is a subfamily of nucleotidyl transferases. Nucleotidyl transferases transfer nucleotides onto phosphosugars. The activated sugars are precursors for synthesis of lipopolysaccharide, glycolipids and polysaccharides. Other subfamilies of nucleotidyl transferases include Alpha-D-Glucose-1-Phosphate Cytidylyltransferase, Mannose-1-phosphate guanyltransferase, and Glucose-1-phosphate thymidylyltransferase. |
| >cd04183 GT2_BcE_like GT2_BcbE_like is likely involved in the biosynthesis of the polysaccharide capsule | Back alignment and domain information |
|---|
Probab=99.21 E-value=4.6e-10 Score=108.15 Aligned_cols=222 Identities=13% Similarity=0.108 Sum_probs=121.3
Q ss_pred EEEEcCCCCCcCCC---CCCccccccCCCCchHHHHHHHHHHhhhhcCCcccEEEecCC--CChHHHHHHHHHhcCCCCc
Q 012172 82 VLKLNGGLGTTMGC---TGPKSVIEVRNGLTFLDLIVIQIENLNAKYGCNVPLLLMNSF--NTHDDTSKIIEKYSKSNVE 156 (469)
Q Consensus 82 vviLAGG~GTRmg~---~~PK~l~~v~~gks~L~~~~~~i~~l~~~~~~~iplviMtS~--~t~e~t~~~~~~~~g~~~~ 156 (469)
+|+||||.||||+. ..||.|+|+ .|+|+++++++.+...+- .-.+++ +.. ...+...+.++.+. .+.+
T Consensus 1 ~iIlAaG~g~Rl~plt~~~pK~ll~i-~g~pli~~~l~~l~~~g~----~~ivvv-~~~~~~~~~~~~~~~~~~~-~~~~ 73 (231)
T cd04183 1 IIIPMAGLGSRFKKAGYTYPKPLIEV-DGKPMIEWVIESLAKIFD----SRFIFI-CRDEHNTKFHLDESLKLLA-PNAT 73 (231)
T ss_pred CEEECCcCCccccccCCCCCceeeEE-CCEEHHHHHHHhhhccCC----ceEEEE-EChHHhhhhhHHHHHHHhC-CCCE
Confidence 58999999999964 789999999 999999999999887542 222332 322 11122222332211 1112
Q ss_pred eEEEEecCcceecCCCCcccCCCCCCCCcccccCCCcccchhccccchHHHHHHcCCcEEEEEeCccccccccHHHHHHH
Q 012172 157 IHTFNQSQYPRLCADDFVPLPCKGKTDKDGWYPPGHGDVFPSLMNSGKLDALISQGKEYVFAANSDNLGAIVDLKILNHL 236 (469)
Q Consensus 157 i~~f~Q~~~P~l~~~~~~~~~~~~~~~~~~~~P~GhGd~~~~L~~sg~L~~l~~~G~~~v~v~n~DNL~~~~dp~~Lg~~ 236 (469)
+ .+.|. .+.|+++.+.+... .+ .+.++++|.++|++....-..++-.+
T Consensus 74 i-~~~~~------------------------~~~g~~~~l~~a~~------~l-~~~~~~lv~~~D~i~~~~~~~~~~~~ 121 (231)
T cd04183 74 V-VELDG------------------------ETLGAACTVLLAAD------LI-DNDDPLLIFNCDQIVESDLLAFLAAF 121 (231)
T ss_pred E-EEeCC------------------------CCCcHHHHHHHHHh------hc-CCCCCEEEEecceeeccCHHHHHHHh
Confidence 2 12222 25777776543221 11 12468999999996543212334334
Q ss_pred HHcCCcceEEEeeeccCCCcceEEEE-eCCee-EEEEeccCChhhhhhccccccccEEEEEeEEEeHH-HHHHHHHhccc
Q 012172 237 IQNKNEYCMEVTPKTLADVKGGTLIS-YEGKV-QLLEIAQVPDEHVNEFKSIEKFKIFNTNNLWVNLK-AIKRLVEADAL 313 (469)
Q Consensus 237 ~~~~~~~~~~v~~k~~~~~~~G~iv~-~~g~~-~ivEy~~~~~e~~~~~~~~~~~~~~Nt~~~~~~l~-~L~~~l~~~~~ 313 (469)
...+.+..+-++.+ +...+|.+.. .+|++ .++|. +.. -...|+|.|+|+.+ .+.+.++..
T Consensus 122 ~~~~~~~~i~~~~~--~~~~~~~v~~d~~~~v~~~~ek-~~~------------~~~~~~Giy~~~~~~~~~~~l~~~-- 184 (231)
T cd04183 122 RERDLDGGVLTFFS--SHPRWSYVKLDENGRVIETAEK-EPI------------SDLATAGLYYFKSGSLFVEAAKKM-- 184 (231)
T ss_pred hccCCceEEEEEeC--CCCCeEEEEECCCCCEEEeEEc-CCC------------CCccEeEEEEECcHHHHHHHHHHH--
Confidence 44444544433333 3446776654 35666 45653 111 13579999999987 444555420
Q ss_pred ccccccCCCcCCCcceehhHHHhhhHhhhcccceeEeecCccccccCCchhH
Q 012172 314 KMEIIPNPKEVDGIKVLQLETAAGAAIRFFDHAIGCNVHRSRFLPVKATSDL 365 (469)
Q Consensus 314 ~lp~~~n~K~~~g~~~iqle~~~~d~~~~~~~~~~v~v~r~eF~pVKn~~dL 365 (469)
+.+.....++ +.++.++..++..-.++.++.++...|.-|.+..||
T Consensus 185 ----~~~~~~~~~~--~~~~d~i~~~~~~g~~v~~~~~~~~~w~di~t~~dl 230 (231)
T cd04183 185 ----IRKDDSVNGE--FYISPLYNELILDGKKVGIYLIDKDDYHSFGTPEDL 230 (231)
T ss_pred ----HhhcccccCc--EEEhHHHHHHHHcCCEEEEEEeccccEEEcCChHhc
Confidence 1011001122 223455555555444466666665567777777664
|
GT2_BcbE_like: The bcbE gene is one of the genes in the capsule biosynthetic locus of Pasteurella multocida. Its deducted product is likely involved in the biosynthesis of the polysaccharide capsule, which is found on surface of a wide range of bacteria. It is a subfamily of Glycosyltransferase Family GT2, which includes diverse families of glycosyltransferases with a common GT-A type structural fold, which has two tightly associated beta/alpha/beta domains that tend to form a continuous central sheet of at least eight beta-strands. These are enzymes that catalyze the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. |
| >cd02508 ADP_Glucose_PP ADP-glucose pyrophosphorylase is involved in the biosynthesis of glycogen or starch | Back alignment and domain information |
|---|
Probab=99.19 E-value=2.6e-10 Score=107.93 Aligned_cols=156 Identities=15% Similarity=0.217 Sum_probs=100.6
Q ss_pred EEEEcCCCCCcCC---CCCCccccccCCCC-chHHHHHHHHHHhhhhcCCcccEEEecCCCChHHHHHHHHHhc--CCC-
Q 012172 82 VLKLNGGLGTTMG---CTGPKSVIEVRNGL-TFLDLIVIQIENLNAKYGCNVPLLLMNSFNTHDDTSKIIEKYS--KSN- 154 (469)
Q Consensus 82 vviLAGG~GTRmg---~~~PK~l~~v~~gk-s~L~~~~~~i~~l~~~~~~~iplviMtS~~t~e~t~~~~~~~~--g~~- 154 (469)
+|+||||.||||. .+.||.|+|+ .|+ |+++++++.+...+-+ .++|.+++ ..+.+.+++.+.. +..
T Consensus 1 avILAaG~gtRl~plt~~~pK~llpv-~g~~pli~~~l~~l~~~gi~-----~iivv~~~-~~~~i~~~~~~~~~~~~~~ 73 (200)
T cd02508 1 AIILAGGEGTRLSPLTKKRAKPAVPF-GGRYRLIDFPLSNMVNSGIR-----NVGVLTQY-KSRSLNDHLGSGKEWDLDR 73 (200)
T ss_pred CEEeCCCCCcccchhhcCCcceeeEE-CCeeeeHHHHHHHHHHCCCC-----EEEEEeCC-ChHHHHHHHhCCCcccCCC
Confidence 4899999999997 4789999999 898 9999999999886422 44555566 6788888886421 100
Q ss_pred --CceEEEEecCcceecCCCCcccCCCCCCCCcccccCCCcccchhccccchHHHHHHcCCcEEEEEeCccccccccHHH
Q 012172 155 --VEIHTFNQSQYPRLCADDFVPLPCKGKTDKDGWYPPGHGDVFPSLMNSGKLDALISQGKEYVFAANSDNLGAIVDLKI 232 (469)
Q Consensus 155 --~~i~~f~Q~~~P~l~~~~~~~~~~~~~~~~~~~~P~GhGd~~~~L~~sg~L~~l~~~G~~~v~v~n~DNL~~~~dp~~ 232 (469)
..+... +... ...+..|.|+|+.+.... +.+....-++++|.++|++....--.+
T Consensus 74 ~~~~~~~~-~~~~-----------------~~~~~~~~Gta~al~~a~-----~~i~~~~~~~~lv~~gD~v~~~~~~~~ 130 (200)
T cd02508 74 KNGGLFIL-PPQQ-----------------RKGGDWYRGTADAIYQNL-----DYIERSDPEYVLILSGDHIYNMDYREM 130 (200)
T ss_pred CCCCEEEe-Cccc-----------------CCCCCcccCcHHHHHHHH-----HHHHhCCCCEEEEecCCEEEecCHHHH
Confidence 012111 1100 002235789999865433 233233347899999999655322255
Q ss_pred HHHHHHcCCcceEEEeeeccCCCcceEEEEeCCeeEEEEeccCChhhhhhccccccccEEEEEeEEEeHHHHHHHHHh
Q 012172 233 LNHLIQNKNEYCMEVTPKTLADVKGGTLISYEGKVQLLEIAQVPDEHVNEFKSIEKFKIFNTNNLWVNLKAIKRLVEA 310 (469)
Q Consensus 233 Lg~~~~~~~~~~~~v~~k~~~~~~~G~iv~~~g~~~ivEy~~~~~e~~~~~~~~~~~~~~Nt~~~~~~l~~L~~~l~~ 310 (469)
+.++.++++++++-+. .|+|.++|+.+.+.++++.
T Consensus 131 l~~~~~~~~~~t~~~~-------------------------------------------~~~g~yi~~~~~~~~~l~~ 165 (200)
T cd02508 131 LDFHIESGADITVVYK-------------------------------------------ASMGIYIFSKDLLIELLEE 165 (200)
T ss_pred HHHHHHcCCCEEEEEh-------------------------------------------hcCEEEEEEHHHHHHHHHH
Confidence 5555544433322111 7999999999999888764
|
ADP-glucose pyrophosphorylase (glucose-1-phosphate adenylyltransferase) catalyzes a very important step in the biosynthesis of alpha 1,4-glucans (glycogen or starch) in bacteria and plants: synthesis of the activated glucosyl donor, ADP-glucose, from glucose-1-phosphate and ATP. ADP-glucose pyrophosphorylase is a tetrameric allosterically regulated enzyme. While a homotetramer in bacteria, in plant chloroplasts and amyloplasts, it is a heterotetramer of two different, yet evolutionary related, subunits. There are a number of conserved regions in the sequence of bacterial and plant ADP-glucose pyrophosphorylase subunits. It is a subfamily of a very diverse glycosy transferase family 2. |
| >TIGR01479 GMP_PMI mannose-1-phosphate guanylyltransferase/mannose-6-phosphate isomerase | Back alignment and domain information |
|---|
Probab=99.13 E-value=8.8e-10 Score=117.76 Aligned_cols=190 Identities=10% Similarity=0.051 Sum_probs=110.3
Q ss_pred eEEEEcCCCCCcCC----CCCCccccccCCCCchHHHHHHHHHHhhhhcCCcccEEEecCCCChHHHHHHHHHhcCCCCc
Q 012172 81 VVLKLNGGLGTTMG----CTGPKSVIEVRNGLTFLDLIVIQIENLNAKYGCNVPLLLMNSFNTHDDTSKIIEKYSKSNVE 156 (469)
Q Consensus 81 avviLAGG~GTRmg----~~~PK~l~~v~~gks~L~~~~~~i~~l~~~~~~~iplviMtS~~t~e~t~~~~~~~~g~~~~ 156 (469)
-+||||||.||||+ .+.||.++++.+++|||++.++++..+... .++|.|+..-...+.+.++++. .+ .
T Consensus 2 ~~vILAgG~GtRl~PlS~~~~PK~~l~l~g~~~ll~~tl~~l~~~~~~-----~iviv~~~~~~~~~~~~l~~~~-~~-~ 74 (468)
T TIGR01479 2 IPVILAGGSGTRLWPLSRELYPKQFLALVGDLTMLQQTLKRLAGLPCS-----SPLVICNEEHRFIVAEQLREIG-KL-A 74 (468)
T ss_pred EEEEecCcccccCCccccCCCCCceeEcCCCCcHHHHHHHHHhcCCCc-----CcEEecCHHHHHHHHHHHHHcC-CC-c
Confidence 36899999999998 457999999955599999999998876421 2334444422234444554321 00 0
Q ss_pred eEEEEecCcceecCCCCcccCCCCCCCCcccccCCCcccchhccccchHHHHHH--cCCcEEEEEeCcccccc-ccH-HH
Q 012172 157 IHTFNQSQYPRLCADDFVPLPCKGKTDKDGWYPPGHGDVFPSLMNSGKLDALIS--QGKEYVFAANSDNLGAI-VDL-KI 232 (469)
Q Consensus 157 i~~f~Q~~~P~l~~~~~~~~~~~~~~~~~~~~P~GhGd~~~~L~~sg~L~~l~~--~G~~~v~v~n~DNL~~~-~dp-~~ 232 (469)
..++.| ..|.|+|++... . . ..+.+ .+-.+++|+++|++... .+. .+
T Consensus 75 ~~~i~E------------------------p~~~gTa~ai~~-a-a---~~~~~~~~~~~~vlVl~~D~~i~~~~~f~~~ 125 (468)
T TIGR01479 75 SNIILE------------------------PVGRNTAPAIAL-A-A---LLAARRNGEDPLLLVLAADHVITDEDAFQAA 125 (468)
T ss_pred ceEEec------------------------ccccCchHHHHH-H-H---HHHHHHHCCCcEEEEecCceeecCHHHHHHH
Confidence 122222 236788877432 1 1 11222 23457999999995432 111 23
Q ss_pred HHHH---HHcCCcceEEEeeeccCCCcceEEEEeC-------Cee-EEEEeccCChhhhhhccccccccEEEEEeEEEeH
Q 012172 233 LNHL---IQNKNEYCMEVTPKTLADVKGGTLISYE-------GKV-QLLEIAQVPDEHVNEFKSIEKFKIFNTNNLWVNL 301 (469)
Q Consensus 233 Lg~~---~~~~~~~~~~v~~k~~~~~~~G~iv~~~-------g~~-~ivEy~~~~~e~~~~~~~~~~~~~~Nt~~~~~~l 301 (469)
+..+ .+.+. ..+-.+..+.+..+||.+...+ +++ +++|..+.+..+ .+-. .+-.+.|+|+++++.
T Consensus 126 l~~~~~~a~~~~-lvtlgi~p~~p~t~YGyI~~~~~~~~~~~~~V~~f~EKP~~~~a~--~~l~-~g~~~wNsGif~~~~ 201 (468)
T TIGR01479 126 VKLAMPAAAEGK-LVTFGIVPTHPETGYGYIRRGEPLAGEDVYQVQRFVEKPDLATAQ--AYLE-SGDYYWNSGMFLFRA 201 (468)
T ss_pred HHHHHHHHhcCC-EEEEEecCCCCCCCceEEEeCCccCCCCceEEeEEEECCChHHHH--HHHh-cCCeEEEeeEEEEEH
Confidence 3322 22232 2222244456778999998641 355 578876654332 1111 111268999999999
Q ss_pred HHHHHHHHh
Q 012172 302 KAIKRLVEA 310 (469)
Q Consensus 302 ~~L~~~l~~ 310 (469)
+.|.+.+.+
T Consensus 202 ~~ll~~l~~ 210 (468)
T TIGR01479 202 SRYLAELKK 210 (468)
T ss_pred HHHHHHHHH
Confidence 988877765
|
This enzyme is known to be bifunctional, as both mannose-6-phosphate isomerase (EC 5.3.1.8) (PMI) and mannose-1-phosphate guanylyltransferase (EC 2.7.7.22) in Pseudomonas aeruginosa, Xanthomonas campestris, and Gluconacetobacter xylinus. The literature on the enzyme from E. coli attributes mannose-6-phosphate isomerase activity to an adjacent gene, but the present sequence has not been shown to lack the activity. The PMI domain is C-terminal. |
| >TIGR00453 ispD 2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase | Back alignment and domain information |
|---|
Probab=99.02 E-value=5.3e-09 Score=99.93 Aligned_cols=211 Identities=15% Similarity=0.161 Sum_probs=112.9
Q ss_pred eEEEEcCCCCCcCCCCCCccccccCCCCchHHHHHHHHHHhhhhcCCcccEEEecCCCChHHHHHHHHHhcCCCCceEEE
Q 012172 81 VVLKLNGGLGTTMGCTGPKSVIEVRNGLTFLDLIVIQIENLNAKYGCNVPLLLMNSFNTHDDTSKIIEKYSKSNVEIHTF 160 (469)
Q Consensus 81 avviLAGG~GTRmg~~~PK~l~~v~~gks~L~~~~~~i~~l~~~~~~~iplviMtS~~t~e~t~~~~~~~~g~~~~i~~f 160 (469)
++|+||||.|||||++.||.++++ .|+|+++|.++++..... .+ .+++-+++...+.+.+.+.. ...+.+.
T Consensus 1 ~aiIlAaG~s~R~~~~~~K~l~~l-~gkpll~~~l~~l~~~~~---~~-~ivVv~~~~~~~~~~~~~~~----~~~~~~~ 71 (217)
T TIGR00453 1 SAVIPAAGRGTRFGSGVPKQYLEL-GGRPLLEHTLDAFLAHPA---ID-EVVVVVSPEDQEFFQKYLVA----RAVPKIV 71 (217)
T ss_pred CEEEEcCcccccCCCCCCccEeEE-CCeEHHHHHHHHHhcCCC---CC-EEEEEEChHHHHHHHHHhhc----CCcEEEe
Confidence 468999999999999889999999 999999999999987521 01 23443333222333333321 0011111
Q ss_pred EecCcceecCCCCcccCCCCCCCCcccccCCCcccchhccccchHHHHHHc-CCcEEEEEeCcc-ccccccH-HHHHHHH
Q 012172 161 NQSQYPRLCADDFVPLPCKGKTDKDGWYPPGHGDVFPSLMNSGKLDALISQ-GKEYVFAANSDN-LGAIVDL-KILNHLI 237 (469)
Q Consensus 161 ~Q~~~P~l~~~~~~~~~~~~~~~~~~~~P~GhGd~~~~L~~sg~L~~l~~~-G~~~v~v~n~DN-L~~~~dp-~~Lg~~~ 237 (469)
+.|.+ -. .++...|... ..+++++.++|. +...-.. .++..+.
T Consensus 72 ----------------------------~~~~~-~~-----~sl~~~l~~~~~~d~vlv~~~D~P~i~~~~i~~li~~~~ 117 (217)
T TIGR00453 72 ----------------------------AGGDT-RQ-----DSVRNGLKALKDAEWVLVHDAARPFVPKELLDRLLEALR 117 (217)
T ss_pred ----------------------------CCCch-HH-----HHHHHHHHhCCCCCEEEEccCccCCCCHHHHHHHHHHHh
Confidence 12221 11 1122223222 467999999999 8765442 2222222
Q ss_pred HcCCcceEEEeeeccCCCcceEEEE-eCCee-EEEEeccCChhhhhhccccccccEEEEEeEEEeHHHHHHHHHhccccc
Q 012172 238 QNKNEYCMEVTPKTLADVKGGTLIS-YEGKV-QLLEIAQVPDEHVNEFKSIEKFKIFNTNNLWVNLKAIKRLVEADALKM 315 (469)
Q Consensus 238 ~~~~~~~~~v~~k~~~~~~~G~iv~-~~g~~-~ivEy~~~~~e~~~~~~~~~~~~~~Nt~~~~~~l~~L~~~l~~~~~~l 315 (469)
. .+...-+++.. .|+... .+|.+ .++| . ..+..+|+ .++|+...|.+++..
T Consensus 118 ~--~~~~~~~~~~~-----~~v~~~~~~g~~~~~~~-------r-------~~~~~~~~-p~~f~~~~l~~~~~~----- 170 (217)
T TIGR00453 118 K--AGAAILALPVA-----DTLKRVEADGFIVETVD-------R-------EGLWAAQT-PQAFRTELLKKALAR----- 170 (217)
T ss_pred h--CCcEEEeEecc-----ceEEEEcCCCceeecCC-------h-------HHeEEEeC-CCcccHHHHHHHHHH-----
Confidence 2 23323223221 232221 23533 2444 1 34667788 589999999998864
Q ss_pred ccccCCCcCCCcceehhHHHhhhHhhhcccceeEeecCccccccCCchhHHHHHHH
Q 012172 316 EIIPNPKEVDGIKVLQLETAAGAAIRFFDHAIGCNVHRSRFLPVKATSDLLLVQSD 371 (469)
Q Consensus 316 p~~~n~K~~~g~~~iqle~~~~d~~~~~~~~~~v~v~r~eF~pVKn~~dL~~~~~~ 371 (469)
. +++ + +.+.....-+...-.++..++++.+.+ .|+++.||..+++.
T Consensus 171 --~-~~~---~---~~~~d~~~~~~~~g~~i~~~~~~~~~~-~I~~~~Dl~~ae~~ 216 (217)
T TIGR00453 171 --A-KEE---G---FEITDDASAVEKLGGKVALVEGDALNF-KITTPEDLALAEAL 216 (217)
T ss_pred --H-Hhc---C---CCCCcHHHHHHHcCCCeEEEecCcccc-ccCCHHHHHHHHHh
Confidence 1 111 1 111100111111223444555554444 99999999998864
|
Members of this protein family are 2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase, the IspD protein of the deoxyxylulose pathway of IPP biosynthesis. In about twenty percent of bacterial genomes, this protein occurs as IspDF, a bifunctional fusion protein. |
| >PF14134 DUF4301: Domain of unknown function (DUF4301) | Back alignment and domain information |
|---|
Probab=98.91 E-value=1e-08 Score=107.05 Aligned_cols=251 Identities=21% Similarity=0.239 Sum_probs=157.3
Q ss_pred CCC-CCCccccccC-----CCCchHHHHHHHHHHhhhhcCCcccEEEecCCCCh-HHHHHHHHH----h---cCCCCceE
Q 012172 93 MGC-TGPKSVIEVR-----NGLTFLDLIVIQIENLNAKYGCNVPLLLMNSFNTH-DDTSKIIEK----Y---SKSNVEIH 158 (469)
Q Consensus 93 mg~-~~PK~l~~v~-----~gks~L~~~~~~i~~l~~~~~~~iplviMtS~~t~-e~t~~~~~~----~---~g~~~~i~ 158 (469)
|++ ..||+|++.. ...||=+|++|.++.....--+++++-| |+ .| +..++.+++ | .+-.-+|.
T Consensus 161 LnYg~lPKGLl~FH~Y~~~~rTp~EEHL~Eaa~Ya~~~g~~~lHFTV--S~-eH~~~F~~~~~~~~~~~e~~~~v~f~Is 237 (513)
T PF14134_consen 161 LNYGNLPKGLLPFHKYPDGIRTPFEEHLVEAALYAKSNGKANLHFTV--SP-EHLDLFKKEVEEVKPKYEKKYGVKFEIS 237 (513)
T ss_pred CCCCCCCceeeecccCCCCCcCcHHHHHHHHHHHHhcCCeEEEEEee--CH-HHHHHHHHHHHHHHHHHHHhhCceEEEE
Confidence 444 6799998862 4688999999999988766236789988 76 44 333444433 1 12234588
Q ss_pred EEEecCc---ceecCCCCcccCCCCCCCCcccccCCCcccchhccccchHHHHHHcCCcEEEEEeCcccc-ccccH----
Q 012172 159 TFNQSQY---PRLCADDFVPLPCKGKTDKDGWYPPGHGDVFPSLMNSGKLDALISQGKEYVFAANSDNLG-AIVDL---- 230 (469)
Q Consensus 159 ~f~Q~~~---P~l~~~~~~~~~~~~~~~~~~~~P~GhGd~~~~L~~sg~L~~l~~~G~~~v~v~n~DNL~-~~~dp---- 230 (469)
|-.|... -+++.++...... ++++...|.|||-+ ++.|.+...+.|||=|+||.+ ...-.
T Consensus 238 fS~Qk~sTDTIAv~~dN~pFR~~---dG~LlFRPgGHGAL---------ieNLN~ldaDiIFIKNIDNVvpd~~k~~t~~ 305 (513)
T PF14134_consen 238 FSEQKPSTDTIAVDPDNTPFRNE---DGSLLFRPGGHGAL---------IENLNDLDADIIFIKNIDNVVPDRLKEETVK 305 (513)
T ss_pred ecccCCCCCeeEECCCCCccCCC---CCCEEeCCCcchHH---------HhhhccccCCEEEEeCccccCCcccchhHHH
Confidence 8888752 2445554433332 47889999999977 456666777899999999944 22211
Q ss_pred ---HHHHHHHHc-------------C-------------------------------------------CcceEEEeeec
Q 012172 231 ---KILNHLIQN-------------K-------------------------------------------NEYCMEVTPKT 251 (469)
Q Consensus 231 ---~~Lg~~~~~-------------~-------------------------------------------~~~~~~v~~k~ 251 (469)
.+-|.+++- + -++-++-.-|
T Consensus 306 yKk~LaG~L~~lQ~~~F~yl~~L~~~~~~~~~l~ei~~Fl~~~L~~~~~~~~~~~~~~~~~~yL~~kLnRPiRVCGMVk- 384 (513)
T PF14134_consen 306 YKKILAGKLLELQEKIFKYLKLLDKGKYSEEELEEIKDFLEEELNIKLPDDFKKLSDEEKIEYLKEKLNRPIRVCGMVK- 384 (513)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhhCCCCcHHHHhhCHHHHHHHHHHHcCCCceeeeccc-
Confidence 222333211 0 1111111112
Q ss_pred cCCCcce--EEEE-eCCe--eEEEEeccCC---hhhhhhccccccccEEEEEeEEEeHHHHHHHHHhcccccccccCCCc
Q 012172 252 LADVKGG--TLIS-YEGK--VQLLEIAQVP---DEHVNEFKSIEKFKIFNTNNLWVNLKAIKRLVEADALKMEIIPNPKE 323 (469)
Q Consensus 252 ~~~~~~G--~iv~-~~g~--~~ivEy~~~~---~e~~~~~~~~~~~~~~Nt~~~~~~l~~L~~~l~~~~~~lp~~~n~K~ 323 (469)
+..+.|| -.++ .||. ++|||.+|++ +++..-|+ .-..||--.+++.+..++. ...+|+-++++++
T Consensus 385 NeGEPGGGPFwv~~~dG~~SLQIvEssQId~~~~~q~~if~---~~THFNPVDLVCgvkdykG----~kFdL~~fvD~~t 457 (513)
T PF14134_consen 385 NEGEPGGGPFWVKNEDGTVSLQIVESSQIDMSNPEQKEIFK---NSTHFNPVDLVCGVKDYKG----EKFDLPDFVDPNT 457 (513)
T ss_pred cCCCCCCCCeEEECCCCCEeeeeehhhhcCCCCHHHHHHHH---cCCCCCccceEeeccCCCC----CcCCchhccCCCC
Confidence 3344444 3344 4786 4899999984 45544453 3356777777777776542 2345665555554
Q ss_pred -------CCCcc--eehhHHHhhhHhhhcccceeEeecCccccccCCchhHHH
Q 012172 324 -------VDGIK--VLQLETAAGAAIRFFDHAIGCNVHRSRFLPVKATSDLLL 367 (469)
Q Consensus 324 -------~~g~~--~iqle~~~~d~~~~~~~~~~v~v~r~eF~pVKn~~dL~~ 367 (469)
.+|.. +..|.-.+.-+|..+ +.++|+||-.-|.|||+.+||+.
T Consensus 458 gFIs~KSk~Gk~LKAlELPGLWNGaMa~W-nTvFVEVPl~TFNPVKTVnDLLr 509 (513)
T PF14134_consen 458 GFISEKSKNGKELKALELPGLWNGAMADW-NTVFVEVPLITFNPVKTVNDLLR 509 (513)
T ss_pred ceeeecCCCCccchhhccCCcccchhcCC-ceEEEEeccccCCCccchhhhcc
Confidence 34544 455556677788885 67789999999999999999875
|
|
| >cd04198 eIF-2B_gamma_N The N-terminal domain of gamma subunit of the eIF-2B is a subfamily of glycosyltransferase 2 | Back alignment and domain information |
|---|
Probab=98.90 E-value=2.8e-08 Score=95.20 Aligned_cols=130 Identities=12% Similarity=0.151 Sum_probs=84.3
Q ss_pred eEEEEcCCCCCcCC---CCCCccccccCCCCchHHHHHHHHHHhhhhcCCcccEEEecCCCChHHHHHHHHHhc-CC--C
Q 012172 81 VVLKLNGGLGTTMG---CTGPKSVIEVRNGLTFLDLIVIQIENLNAKYGCNVPLLLMNSFNTHDDTSKIIEKYS-KS--N 154 (469)
Q Consensus 81 avviLAGG~GTRmg---~~~PK~l~~v~~gks~L~~~~~~i~~l~~~~~~~iplviMtS~~t~e~t~~~~~~~~-g~--~ 154 (469)
-+|+||||.||||+ ...||.|+|+ .|+|++++.++.+.+.+-+ .+++.++....+.++++++++. .. .
T Consensus 2 ~aVILAgG~g~R~~plt~~~pK~Llpv-~g~pli~~~l~~l~~~g~~-----~iivv~~~~~~~~i~~~l~~~~~~~~~~ 75 (214)
T cd04198 2 QAVILAGGGGSRLYPLTDNIPKALLPV-ANKPMIWYPLDWLEKAGFE-----DVIVVVPEEEQAEISTYLRSFPLNLKQK 75 (214)
T ss_pred EEEEEeCCCCCcCCccccCCCcccCEE-CCeeHHHHHHHHHHHCCCC-----eEEEEECHHHHHHHHHHHHhcccccCcc
Confidence 36789999999998 4789999999 9999999999999885422 3344445433356777776542 11 1
Q ss_pred CceEEEEecCcceecCCCCcccCCCCCCCCcccccCCCcccchhccccchHHHHHHcCCcEEEEEeCccccccccHHHHH
Q 012172 155 VEIHTFNQSQYPRLCADDFVPLPCKGKTDKDGWYPPGHGDVFPSLMNSGKLDALISQGKEYVFAANSDNLGAIVDLKILN 234 (469)
Q Consensus 155 ~~i~~f~Q~~~P~l~~~~~~~~~~~~~~~~~~~~P~GhGd~~~~L~~sg~L~~l~~~G~~~v~v~n~DNL~~~~dp~~Lg 234 (469)
..+.++. ...+.|+||+....... + .+.++|.++|.+....-..++.
T Consensus 76 ~~~~~~~------------------------~~~~~gt~~al~~~~~~-----i----~~d~lv~~~D~i~~~~l~~~l~ 122 (214)
T cd04198 76 LDEVTIV------------------------LDEDMGTADSLRHIRKK-----I----KKDFLVLSCDLITDLPLIELVD 122 (214)
T ss_pred eeEEEec------------------------CCCCcChHHHHHHHHhh-----c----CCCEEEEeCccccccCHHHHHH
Confidence 1111111 12368899986554431 1 3568999999765542235666
Q ss_pred HHHHcCCcceEEEee
Q 012172 235 HLIQNKNEYCMEVTP 249 (469)
Q Consensus 235 ~~~~~~~~~~~~v~~ 249 (469)
.+..+++.+++.+.+
T Consensus 123 ~h~~~~~~~t~~~~~ 137 (214)
T cd04198 123 LHRSHDASLTVLLYP 137 (214)
T ss_pred HHhccCCcEEEEEec
Confidence 666667777665544
|
N-terminal domain of gamma subunit of the eukaryotic translation initiation factor 2B (eIF-2B): eIF-2B is a guanine nucleotide-exchange factor which mediates the exchange of GDP (bound to initiation factor eIF2) for GTP, generating active eIF2.GTP complex. EIF2B is a complex multimeric protein consisting of five subunits named alpha, beta, gamma, delta and epsilon. Subunit gamma shares sequence similarity with epsilon subunit, and with a family of bifunctional nucleotide-binding enzymes such as ADP-glucose pyrophosphorylase, suggesting that epsilon subunit may play roles in nucleotide binding activity. In yeast, eIF2B gamma enhances the activity of eIF2B-epsilon leading to the idea that these subunits form the catalytic subcomplex. |
| >PRK13368 3-deoxy-manno-octulosonate cytidylyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=98.88 E-value=9.3e-08 Score=92.58 Aligned_cols=223 Identities=9% Similarity=0.095 Sum_probs=124.7
Q ss_pred ceeEEEEcCCCCCcCCCCCCccccccCCCCchHHHHHHHHHHhhhhcCCcc-cEEEecCCCChHHHHHHHHHhcCCCCce
Q 012172 79 KLVVLKLNGGLGTTMGCTGPKSVIEVRNGLTFLDLIVIQIENLNAKYGCNV-PLLLMNSFNTHDDTSKIIEKYSKSNVEI 157 (469)
Q Consensus 79 k~avviLAGG~GTRmg~~~PK~l~~v~~gks~L~~~~~~i~~l~~~~~~~i-plviMtS~~t~e~t~~~~~~~~g~~~~i 157 (469)
++++||||||.++||+ +|.|+++ .|+|+++|.++++.+.. .+ .+++.| . ++.+.++++.+ .+
T Consensus 2 ~~~aiIlA~g~s~R~~---~K~l~~i-~GkPli~~~i~~l~~~~-----~~~~ivv~t-~--~~~i~~~~~~~-----~~ 64 (238)
T PRK13368 2 KVVVVIPARYGSSRLP---GKPLLDI-LGKPMIQHVYERAAQAA-----GVEEVYVAT-D--DQRIEDAVEAF-----GG 64 (238)
T ss_pred cEEEEEecCCCCCCCC---CCccCcc-CCcCHHHHHHHHHHhcC-----CCCeEEEEC-C--hHHHHHHHHHc-----CC
Confidence 5789999999999996 5999999 99999999999998862 12 334433 2 47788888653 12
Q ss_pred EEEEecCcceecCCCCcccCCCCCCCCcccccCCCcccchhccccchHHHHHHcCCcEEEEEeCcc-ccccccH-HHHHH
Q 012172 158 HTFNQSQYPRLCADDFVPLPCKGKTDKDGWYPPGHGDVFPSLMNSGKLDALISQGKEYVFAANSDN-LGAIVDL-KILNH 235 (469)
Q Consensus 158 ~~f~Q~~~P~l~~~~~~~~~~~~~~~~~~~~P~GhGd~~~~L~~sg~L~~l~~~G~~~v~v~n~DN-L~~~~dp-~~Lg~ 235 (469)
.++.+. ...+.|++++..+ +...+.+++++.++|+ +....+. .++..
T Consensus 65 ~v~~~~----------------------~~~~~g~~~~~~a---------~~~~~~d~~lv~~~D~P~i~~~~i~~l~~~ 113 (238)
T PRK13368 65 KVVMTS----------------------DDHLSGTDRLAEV---------MLKIEADIYINVQGDEPMIRPRDIDTLIQP 113 (238)
T ss_pred eEEecC----------------------ccCCCccHHHHHH---------HHhCCCCEEEEEcCCcCcCCHHHHHHHHHH
Confidence 222211 0113455554322 2222557899999999 7765553 33444
Q ss_pred HHHcCC-cceEEEeeecc-----CCCcceEEEEeCCee-EEEEec-cCChhhhhhccccccccEEEEEeEEEeHHHHHHH
Q 012172 236 LIQNKN-EYCMEVTPKTL-----ADVKGGTLISYEGKV-QLLEIA-QVPDEHVNEFKSIEKFKIFNTNNLWVNLKAIKRL 307 (469)
Q Consensus 236 ~~~~~~-~~~~~v~~k~~-----~~~~~G~iv~~~g~~-~ivEy~-~~~~e~~~~~~~~~~~~~~Nt~~~~~~l~~L~~~ 307 (469)
+...+. .+.+.+.+... ++..+|+....+|++ .+.|.. ..+..+ .......|+|+|+|+.+.+...
T Consensus 114 ~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~g~v~~~~~~~~~~~~~~------~~~~~~~n~giy~~~~~~l~~~ 187 (238)
T PRK13368 114 MLDDPSINVATLCAPISTEEEFESPNVVKVVVDKNGDALYFSRSPIPSRRDG------ESARYLKHVGIYAFRRDVLQQF 187 (238)
T ss_pred HHHCCCccceeEEEEcCCHHHhcCcCCCEEEECCCCCEEEeeCCCCCCCCCC------CCCceeEEEEEEEeCHHHHHHH
Confidence 433333 32223332211 244455555456776 355432 111110 0112367999999999998874
Q ss_pred HHhcccccccccCCCcCCCcceehhHH-HhhhHhhhcccceeEeecCccccccCCchhHHHHHH
Q 012172 308 VEADALKMEIIPNPKEVDGIKVLQLET-AAGAAIRFFDHAIGCNVHRSRFLPVKATSDLLLVQS 370 (469)
Q Consensus 308 l~~~~~~lp~~~n~K~~~g~~~iqle~-~~~d~~~~~~~~~~v~v~r~eF~pVKn~~dL~~~~~ 370 (469)
+. ... .+. -.+|. .....+....++.++. ....+.-|.+..|+..++.
T Consensus 188 -~~-------~~~-----~~~-~~~~~~~~~~~~~~g~~v~~~~-~~~~~~DI~t~~Dl~~a~~ 236 (238)
T PRK13368 188 -SQ-------LPE-----TPL-EQIESLEQLRALEHGEKIRMVE-VAATSIGVDTPEDLERVRA 236 (238)
T ss_pred -Hc-------CCC-----Chh-hhhhhHHHHHHHHCCCceEEEE-eCCCCCCCCCHHHHHHHHH
Confidence 21 000 000 00111 1111222222344444 3446899999999998875
|
|
| >cd02513 CMP-NeuAc_Synthase CMP-NeuAc_Synthase activates N-acetylneuraminic acid by adding CMP moiety | Back alignment and domain information |
|---|
Probab=98.82 E-value=1.5e-07 Score=89.92 Aligned_cols=216 Identities=13% Similarity=0.116 Sum_probs=123.2
Q ss_pred ceeEEEEcCCCCCcCCCCCCccccccCCCCchHHHHHHHHHHhhhhcCCccc-EEEecCCCChHHHHHHHHHhcCCCCce
Q 012172 79 KLVVLKLNGGLGTTMGCTGPKSVIEVRNGLTFLDLIVIQIENLNAKYGCNVP-LLLMNSFNTHDDTSKIIEKYSKSNVEI 157 (469)
Q Consensus 79 k~avviLAGG~GTRmg~~~PK~l~~v~~gks~L~~~~~~i~~l~~~~~~~ip-lviMtS~~t~e~t~~~~~~~~g~~~~i 157 (469)
++++|+||||.|+||+ .|.++++ .|+||++|.++++.+... +. +++- . .++.+.+++.++. ..
T Consensus 1 ~~~~iIlA~G~s~R~~---~K~l~~l-~Gkpll~~~l~~l~~~~~-----~~~IvV~--~-~~~~i~~~~~~~~---~~- 64 (223)
T cd02513 1 KILAIIPARGGSKGIP---GKNIRPL-GGKPLIAWTIEAALESKL-----FDRVVVS--T-DDEEIAEVARKYG---AE- 64 (223)
T ss_pred CeEEEEecCCCCCCCC---Ccccchh-CCccHHHHHHHHHHhCCC-----CCEEEEE--C-CcHHHHHHHHHhC---CC-
Confidence 5689999999999996 5999999 999999999999987641 22 3442 2 3466666665421 10
Q ss_pred EEEEecCcceecCCCCcccCCCCCCCCcccccCCCcccchhccccchHHHHHHc--CCcEEEEEeCcc-ccccccH-HHH
Q 012172 158 HTFNQSQYPRLCADDFVPLPCKGKTDKDGWYPPGHGDVFPSLMNSGKLDALISQ--GKEYVFAANSDN-LGAIVDL-KIL 233 (469)
Q Consensus 158 ~~f~Q~~~P~l~~~~~~~~~~~~~~~~~~~~P~GhGd~~~~L~~sg~L~~l~~~--G~~~v~v~n~DN-L~~~~dp-~~L 233 (469)
..+... .....-..|.++.+... ++.+.+. +.++++++++|+ +....+. .++
T Consensus 65 ~~~~~~-------------------~~~~~~~~~~~~~i~~~-----l~~l~~~~~~~d~vlv~~~D~P~i~~~~i~~~i 120 (223)
T cd02513 65 VPFLRP-------------------AELATDTASSIDVILHA-----LDQLEELGRDFDIVVLLQPTSPLRSAEDIDEAI 120 (223)
T ss_pred ceeeCC-------------------hHHCCCCCCcHHHHHHH-----HHHHHHhCCCCCEEEEeCCCCCcCCHHHHHHHH
Confidence 111111 00000011333332221 2333332 357999999999 8776553 445
Q ss_pred HHHHHcCCcceEEEeeeccCCCcceEEEEeCCeeEEEEeccCChhhhhhccccccccEEEEEeEEEeHHHHHHHHHhccc
Q 012172 234 NHLIQNKNEYCMEVTPKTLADVKGGTLISYEGKVQLLEIAQVPDEHVNEFKSIEKFKIFNTNNLWVNLKAIKRLVEADAL 313 (469)
Q Consensus 234 g~~~~~~~~~~~~v~~k~~~~~~~G~iv~~~g~~~ivEy~~~~~e~~~~~~~~~~~~~~Nt~~~~~~l~~L~~~l~~~~~ 313 (469)
..+...+.+..+.+.+....+ ..+.....+| ...+-+.+-. ....++.......|.+.|+++.+.+.+....
T Consensus 121 ~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~-~~~~~~~~~~---~~~~q~~~~~~~~n~~~y~~~~~~~~~~~~~--- 192 (223)
T cd02513 121 ELLLSEGADSVFSVTEFHRFP-WRALGLDDNG-LEPVNYPEDK---RTRRQDLPPAYHENGAIYIAKREALLESNSF--- 192 (223)
T ss_pred HHHHhCCCCEEEEEEecCcCc-HHheeeccCC-ceeccCcccc---cCCcCCChhHeeECCEEEEEEHHHHHhcCCc---
Confidence 555555667666665543332 2222222334 3222221100 0011112344567999999999988653110
Q ss_pred ccccccCCCcCCCcceehhHHHhhhHhhhcccceeEeecCccccccCCchhHHHHHH
Q 012172 314 KMEIIPNPKEVDGIKVLQLETAAGAAIRFFDHAIGCNVHRSRFLPVKATSDLLLVQS 370 (469)
Q Consensus 314 ~lp~~~n~K~~~g~~~iqle~~~~d~~~~~~~~~~v~v~r~eF~pVKn~~dL~~~~~ 370 (469)
++ .++..+.++..+-.-|++..|+..+|.
T Consensus 193 ----------------------~g------~~~~~~~~~~~~~~dI~~~~D~~~ae~ 221 (223)
T cd02513 193 ----------------------FG------GKTGPYEMPRERSIDIDTEEDFELAEA 221 (223)
T ss_pred ----------------------cC------CCeEEEEeCccceeCCCCHHHHHHHHH
Confidence 11 344456677778899999999988875
|
CMP-N-acetylneuraminic acid synthetase (CMP-NeuAc synthetase) or acylneuraminate cytidylyltransferase catalyzes the transfer the CMP moiety of CTP to the anomeric hydroxyl group of NeuAc in the presence of Mg++. It is the second to last step in the sialylation of the oligosaccharide component of glycoconjugates by providing the activated sugar-nucleotide cytidine 5'-monophosphate N-acetylneuraminic acid (CMP-Neu5Ac), the substrate for sialyltransferases. Eukaryotic CMP-NeuAc synthetases are predominantly located in the nucleus. The activated CMP-Neu5Ac diffuses from the nucleus into the cytoplasm. |
| >PRK00155 ispD 2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase; Reviewed | Back alignment and domain information |
|---|
Probab=98.81 E-value=1.6e-07 Score=90.49 Aligned_cols=216 Identities=12% Similarity=0.139 Sum_probs=115.3
Q ss_pred cceeEEEEcCCCCCcCCCCCCccccccCCCCchHHHHHHHHHHhhhhcCCcc-cEEEecCCCCh-HHHHHHHHHhcCCCC
Q 012172 78 DKLVVLKLNGGLGTTMGCTGPKSVIEVRNGLTFLDLIVIQIENLNAKYGCNV-PLLLMNSFNTH-DDTSKIIEKYSKSNV 155 (469)
Q Consensus 78 ~k~avviLAGG~GTRmg~~~PK~l~~v~~gks~L~~~~~~i~~l~~~~~~~i-plviMtS~~t~-e~t~~~~~~~~g~~~ 155 (469)
.++.+||||||.|||||+..||.++++ .|+|+++|.++++.... .+ .+++-|+. .. +.+.+.+... . .
T Consensus 2 ~~~~~iILAaG~s~R~g~~~~K~l~~~-~g~pli~~~l~~l~~~~-----~~~~ivvv~~~-~~~~~~~~~~~~~--~-~ 71 (227)
T PRK00155 2 MMVYAIIPAAGKGSRMGADRPKQYLPL-GGKPILEHTLEAFLAHP-----RIDEIIVVVPP-DDRPDFAELLLAK--D-P 71 (227)
T ss_pred CceEEEEEcCccccccCCCCCceeeEE-CCEEHHHHHHHHHHcCC-----CCCEEEEEeCh-HHHHHHHHHhhcc--C-C
Confidence 367899999999999999899999999 99999999999998753 12 34444333 22 2222211100 0 0
Q ss_pred ceEEEEecCcceecCCCCcccCCCCCCCCcccccCCCcccchhccccchHHHHHH-cCCcEEEEEeCcc-ccccccH-HH
Q 012172 156 EIHTFNQSQYPRLCADDFVPLPCKGKTDKDGWYPPGHGDVFPSLMNSGKLDALIS-QGKEYVFAANSDN-LGAIVDL-KI 232 (469)
Q Consensus 156 ~i~~f~Q~~~P~l~~~~~~~~~~~~~~~~~~~~P~GhGd~~~~L~~sg~L~~l~~-~G~~~v~v~n~DN-L~~~~dp-~~ 232 (469)
.+. +.+.|.+ -..++ ...+.. ...+++++..+|. +....+. .+
T Consensus 72 ~~~----------------------------~~~~~~~-~~~sv-----~~~l~~~~~~d~vlv~~~D~P~i~~~~i~~l 117 (227)
T PRK00155 72 KVT----------------------------VVAGGAE-RQDSV-----LNGLQALPDDDWVLVHDAARPFLTPDDIDRL 117 (227)
T ss_pred ceE----------------------------EeCCcch-HHHHH-----HHHHHhCCCCCEEEEccCccCCCCHHHHHHH
Confidence 011 1122222 11122 122221 1346899999999 8776442 33
Q ss_pred HHHHHHcCCcceEEEeeeccCCCcceEEEEeCCee-EEEEeccCChhhhhhccccccccEEEEEeEEEeHHHHHHHHHhc
Q 012172 233 LNHLIQNKNEYCMEVTPKTLADVKGGTLISYEGKV-QLLEIAQVPDEHVNEFKSIEKFKIFNTNNLWVNLKAIKRLVEAD 311 (469)
Q Consensus 233 Lg~~~~~~~~~~~~v~~k~~~~~~~G~iv~~~g~~-~ivEy~~~~~e~~~~~~~~~~~~~~Nt~~~~~~l~~L~~~l~~~ 311 (469)
+..+... +...-+.+-.+ .++++ ..+|.+ .++| . ..+...|+ .++|+.+.|.+++..
T Consensus 118 i~~~~~~--~~~~~~~~~~~---~~~~v-~~~g~~~~~~~------r--------~~~~~~~~-p~~f~~~~l~~~~~~- 175 (227)
T PRK00155 118 IEAAEET--GAAILAVPVKD---TIKRS-DDGGGIVDTPD------R--------SGLWAAQT-PQGFRIELLREALAR- 175 (227)
T ss_pred HHHHhhC--CCEEEEEeccc---cEEEE-cCCCceeecCC------h--------HHheeeeC-CccchHHHHHHHHHH-
Confidence 3333322 22222322211 12333 223433 1222 1 22455666 789999999999864
Q ss_pred ccccccccCCCcCCCcceehhHHHhhhHhhhcccceeEeecCccccccCCchhHHHHHHHHH
Q 012172 312 ALKMEIIPNPKEVDGIKVLQLETAAGAAIRFFDHAIGCNVHRSRFLPVKATSDLLLVQSDLY 373 (469)
Q Consensus 312 ~~~lp~~~n~K~~~g~~~iqle~~~~d~~~~~~~~~~v~v~r~eF~pVKn~~dL~~~~~~~~ 373 (469)
..+ + +-+.......+. +.-.++..+..+ .+...|++..||..+|+.++
T Consensus 176 ------~~~-~---~~~~~d~~~~~~---~~~~~i~~~~~~-~~~~~Idt~~Dl~~ae~~~~ 223 (227)
T PRK00155 176 ------ALA-E---GKTITDDASAVE---RLGKPVRLVEGR-YDNIKITTPEDLALAEAILK 223 (227)
T ss_pred ------HHh-c---CCCcCcHHHHHH---HcCCCeEEEecC-cccccCCCHHHHHHHHHHHH
Confidence 111 1 112211111111 111234444433 45559999999999988765
|
|
| >PF12804 NTP_transf_3: MobA-like NTP transferase domain; PDB: 3FWW_A 2XME_D 2XMH_C 2DPW_A 2WAW_A 2OI5_B 1HV9_B 1FWY_A 2OI6_A 2OI7_B | Back alignment and domain information |
|---|
Probab=98.78 E-value=5.5e-08 Score=88.18 Aligned_cols=99 Identities=19% Similarity=0.382 Sum_probs=65.8
Q ss_pred EEEEcCCCCCcCCCCCCccccccCCCCchHHHHHHHHHHhhhhcCCcccEEEecCCCChHHHHHHHHHhcCCCCceEEEE
Q 012172 82 VLKLNGGLGTTMGCTGPKSVIEVRNGLTFLDLIVIQIENLNAKYGCNVPLLLMNSFNTHDDTSKIIEKYSKSNVEIHTFN 161 (469)
Q Consensus 82 vviLAGG~GTRmg~~~PK~l~~v~~gks~L~~~~~~i~~l~~~~~~~iplviMtS~~t~e~t~~~~~~~~g~~~~i~~f~ 161 (469)
+||||||+|+|||. ||.|+++ +|+||++++++++...+.+ ++++.+.. +++.+++..+ .+.++.
T Consensus 1 ~vILa~G~s~Rmg~--~K~l~~i-~g~~li~~~l~~l~~~~~~-----~Ivvv~~~---~~~~~~~~~~-----~~~~v~ 64 (160)
T PF12804_consen 1 AVILAAGKSSRMGG--PKALLPI-GGKPLIERVLEALREAGVD-----DIVVVTGE---EEIYEYLERY-----GIKVVV 64 (160)
T ss_dssp EEEEESSSCGGGTS--CGGGSEE-TTEEHHHHHHHHHHHHTES-----EEEEEEST---HHHHHHHTTT-----TSEEEE
T ss_pred CEEECCcCcccCCC--CccceeE-CCccHHHHHHHHhhccCCc-----eEEEecCh---HHHHHHHhcc-----CceEEE
Confidence 58999999999995 9999999 9999999999999998522 45554443 4555555432 244333
Q ss_pred ecCcceecCCCCcccCCCCCCCCcccccCCCcccchhccccchHHHHHHc-CCcEEEEEeCcc-cccc
Q 012172 162 QSQYPRLCADDFVPLPCKGKTDKDGWYPPGHGDVFPSLMNSGKLDALISQ-GKEYVFAANSDN-LGAI 227 (469)
Q Consensus 162 Q~~~P~l~~~~~~~~~~~~~~~~~~~~P~GhGd~~~~L~~sg~L~~l~~~-G~~~v~v~n~DN-L~~~ 227 (469)
.. +.+ .|...+|. ..+... +.++++|..+|. +...
T Consensus 65 ~~-------------------------~~~-~G~~~sl~-----~a~~~~~~~~~vlv~~~D~p~~~~ 101 (160)
T PF12804_consen 65 DP-------------------------EPG-QGPLASLL-----AALSQLPSSEPVLVLPCDQPFLSP 101 (160)
T ss_dssp -S-------------------------TSS-CSHHHHHH-----HHHHTSTTSSEEEEEETTETTS-H
T ss_pred ec-------------------------ccc-CChHHHHH-----HHHHhcccCCCcEEEeCCccccCH
Confidence 32 112 23322332 334433 678999999999 7544
|
... |
| >cd02516 CDP-ME_synthetase CDP-ME synthetase is involved in mevalonate-independent isoprenoid production | Back alignment and domain information |
|---|
Probab=98.69 E-value=2.7e-07 Score=87.98 Aligned_cols=42 Identities=24% Similarity=0.389 Sum_probs=38.4
Q ss_pred eeEEEEcCCCCCcCCCCCCccccccCCCCchHHHHHHHHHHhh
Q 012172 80 LVVLKLNGGLGTTMGCTGPKSVIEVRNGLTFLDLIVIQIENLN 122 (469)
Q Consensus 80 ~avviLAGG~GTRmg~~~PK~l~~v~~gks~L~~~~~~i~~l~ 122 (469)
+++|+||||.|||||...||.++++ .|+|||++.++++..+.
T Consensus 1 ~~~vILAaG~s~R~~~~~~K~l~~i-~Gkpll~~~i~~l~~~~ 42 (218)
T cd02516 1 VAAIILAAGSGSRMGADIPKQFLEL-GGKPVLEHTLEAFLAHP 42 (218)
T ss_pred CEEEEECCcccccCCCCCCcceeEE-CCeEHHHHHHHHHhcCC
Confidence 4679999999999998889999999 99999999999998763
|
4-diphosphocytidyl-2-methyl-D-erythritol synthase (CDP-ME), also called 2C-methyl-d-erythritol 4-phosphate cytidylyltransferase catalyzes the third step in the alternative (non-mevalonate) pathway of Isopentenyl diphosphate (IPP) biosynthesis: the formation of 4-diphosphocytidyl-2C-methyl-D-erythritol from CTP and 2C-methyl-D-erythritol 4-phosphate. This mevalonate independent pathway that utilizes pyruvate and glyceraldehydes 3-phosphate as starting materials for production of IPP occurs in a variety of bacteria, archaea and plant cells, but is absent in mammals. Thus, CDP-ME synthetase is an attractive targets for the structure-based design of selective antibacterial, herbicidal and antimalarial drugs. |
| >cd02507 eIF-2B_gamma_N_like The N-terminal of eIF-2B_gamma_like is predicted to have glycosyltransferase activity | Back alignment and domain information |
|---|
Probab=98.68 E-value=3.1e-07 Score=88.14 Aligned_cols=158 Identities=15% Similarity=0.186 Sum_probs=92.5
Q ss_pred EEEEcCCCCCcCCC---CCCccccccCCCCchHHHHHHHHHHhhhhcCCcccEEEecCCCChHHHHHHHHHhcC----CC
Q 012172 82 VLKLNGGLGTTMGC---TGPKSVIEVRNGLTFLDLIVIQIENLNAKYGCNVPLLLMNSFNTHDDTSKIIEKYSK----SN 154 (469)
Q Consensus 82 vviLAGG~GTRmg~---~~PK~l~~v~~gks~L~~~~~~i~~l~~~~~~~iplviMtS~~t~e~t~~~~~~~~g----~~ 154 (469)
+|+||||.|+||+. ..||.|+|+ +|+|++++.++.+.+.+-+ .++|.+++ ..+.+.+++.+... ..
T Consensus 3 avIlagg~g~rl~plt~~~pK~llpv-~g~pli~~~l~~l~~~gi~-----~i~vv~~~-~~~~~~~~~~~~~~~~~~~~ 75 (216)
T cd02507 3 AVVLADGFGSRFLPLTSDIPKALLPV-ANVPLIDYTLEWLEKAGVE-----EVFVVCCE-HSQAIIEHLLKSKWSSLSSK 75 (216)
T ss_pred EEEEeCCCccccCccccCCCcccceE-CCEEHHHHHHHHHHHCCCC-----eEEEEeCC-cHHHHHHHHHhcccccccCC
Confidence 57899999999974 789999999 9999999999998875311 34555565 56667777765211 00
Q ss_pred CceEEEEecCcceecCCCCcccCCCCCCCCcccccCCCcccchhccccchHHHHHHcCCcEEEEEeCccccccccH-HHH
Q 012172 155 VEIHTFNQSQYPRLCADDFVPLPCKGKTDKDGWYPPGHGDVFPSLMNSGKLDALISQGKEYVFAANSDNLGAIVDL-KIL 233 (469)
Q Consensus 155 ~~i~~f~Q~~~P~l~~~~~~~~~~~~~~~~~~~~P~GhGd~~~~L~~sg~L~~l~~~G~~~v~v~n~DNL~~~~dp-~~L 233 (469)
..+.. +. .....+.|+|+.... ... ++ .+.+++.++|.+... |+ .++
T Consensus 76 ~~v~~----------------~~------~~~~~~~Gta~~l~~--~~~----~i---~~dflv~~gD~i~~~-~l~~~l 123 (216)
T cd02507 76 MIVDV----------------IT------SDLCESAGDALRLRD--IRG----LI---RSDFLLLSCDLVSNI-PLSELL 123 (216)
T ss_pred ceEEE----------------EE------ccCCCCCccHHHHHH--Hhh----cC---CCCEEEEeCCEeecC-CHHHHH
Confidence 01110 00 001135677776422 111 11 357899999996654 43 334
Q ss_pred HH--HHHcCCcceEEEeeeccC--------CCcceEEEEeC--CeeEEEEeccCChh
Q 012172 234 NH--LIQNKNEYCMEVTPKTLA--------DVKGGTLISYE--GKVQLLEIAQVPDE 278 (469)
Q Consensus 234 g~--~~~~~~~~~~~v~~k~~~--------~~~~G~iv~~~--g~~~ivEy~~~~~e 278 (469)
-. ....+.++.+.+.....+ ....+.++.++ ++..++.+.+-+++
T Consensus 124 ~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~d~~~~~~~~~~~~~~~~~ 180 (216)
T cd02507 124 EERRKKDKNAIATLTVLLASPPVSTEQSKKTEEEDVIAVDSKTQRLLLLHYEEDLDE 180 (216)
T ss_pred HHHHhhCcccceEEEEEeccCCCCccccccCCCCcEEEEcCCCCceEEEechhhcCc
Confidence 32 233355555544332221 33456666543 45778888765443
|
N-terminal domain of eEIF-2B epsilon and gamma, subunits of eukaryotic translation initiators, is a subfamily of glycosyltranferase 2 and is predicted to have glycosyltranferase activity. eIF-2B is a guanine nucleotide-exchange factor which mediates the exchange of GDP (bound to initiation factor eIF2) for GTP, generating active eIF2.GTP complex. EIF2B is a complex multimeric protein consisting of five subunits named alpha, beta, gamma, delta and epsilon. Subunit epsilon shares sequence similarity with gamma subunit, and with a family of bifunctional nucleotide-binding enzymes such as ADP-glucose pyrophosphorylase, suggesting that epsilon subunit may play roles in nucleotide binding activity. In yeast, eIF2B gamma enhances the activity of eIF2B-epsilon leading to the idea that these subunits form the catalytic subcomplex. |
| >TIGR00454 conserved hypothetical protein TIGR00454 | Back alignment and domain information |
|---|
Probab=98.62 E-value=3.2e-07 Score=86.15 Aligned_cols=61 Identities=25% Similarity=0.371 Sum_probs=48.8
Q ss_pred eEEEEcCCCCCcCCCCCCccccccCCCCchHHHHHHHHHHhhhhcCCcccEEEecCCCChHHHHHHHHH
Q 012172 81 VVLKLNGGLGTTMGCTGPKSVIEVRNGLTFLDLIVIQIENLNAKYGCNVPLLLMNSFNTHDDTSKIIEK 149 (469)
Q Consensus 81 avviLAGG~GTRmg~~~PK~l~~v~~gks~L~~~~~~i~~l~~~~~~~iplviMtS~~t~e~t~~~~~~ 149 (469)
.+|+||||+|||||. .||.++++ .|+||++++++++....-. .+++.+++ ..+.++.++++
T Consensus 2 ~aIILAgG~gsRmg~-~~K~Ll~i-~GkplI~~vi~~l~~~~i~-----~I~Vv~~~-~~~~~~~~l~~ 62 (183)
T TIGR00454 2 DALIMAGGKGTRLGG-VEKPLIEV-CGRCLIDHVLSPLLKSKVN-----NIIIATSP-HTPKTEEYINS 62 (183)
T ss_pred eEEEECCccCccCCC-CCceEeEE-CCEEHHHHHHHHHHhCCCC-----EEEEEeCC-CHHHHHHHHhh
Confidence 578999999999986 79999999 8999999999999875421 34455565 56778888764
|
At this time this gene appears to be present only in Archea |
| >COG1213 Predicted sugar nucleotidyltransferases [Cell envelope biogenesis, outer membrane] | Back alignment and domain information |
|---|
Probab=98.61 E-value=3.9e-06 Score=80.68 Aligned_cols=66 Identities=18% Similarity=0.366 Sum_probs=55.5
Q ss_pred eeEEEEcCCCCCcCCCCCCccccccCCCCchHHHHHHHHHHhhhhcCCcccEEEecCCCChHHHHHHHHHhc
Q 012172 80 LVVLKLNGGLGTTMGCTGPKSVIEVRNGLTFLDLIVIQIENLNAKYGCNVPLLLMNSFNTHDDTSKIIEKYS 151 (469)
Q Consensus 80 ~avviLAGG~GTRmg~~~PK~l~~v~~gks~L~~~~~~i~~l~~~~~~~iplviMtS~~t~e~t~~~~~~~~ 151 (469)
..+||||||.|||||-+.||.|.++ .|++++++.++++.+..-+ -+|+.|+.+..+.+.+++.+|.
T Consensus 4 ~kavILAAG~GsRlg~~~PK~Lvev-~gr~ii~~~i~~L~~~gi~-----e~vvV~~g~~~~lve~~l~~~~ 69 (239)
T COG1213 4 MKAVILAAGFGSRLGPDIPKALVEV-GGREIIYRTIENLAKAGIT-----EFVVVTNGYRADLVEEFLKKYP 69 (239)
T ss_pred eeEEEEecccccccCCCCCchhhhc-CCeEeHHHHHHHHHHcCCc-----eEEEEeccchHHHHHHHHhcCC
Confidence 4579999999999999999999999 8999999999999887532 4566666668888888888763
|
|
| >TIGR00466 kdsB 3-deoxy-D-manno-octulosonate cytidylyltransferase | Back alignment and domain information |
|---|
Probab=98.52 E-value=8.6e-06 Score=79.54 Aligned_cols=225 Identities=10% Similarity=0.075 Sum_probs=116.2
Q ss_pred EEEEcCCCCCcCCCCCCccccccCCCCchHHHHHHHHHHhhhhcCCcccEEEecCCCChHHHHHHHHHhcCCCCceEEEE
Q 012172 82 VLKLNGGLGTTMGCTGPKSVIEVRNGLTFLDLIVIQIENLNAKYGCNVPLLLMNSFNTHDDTSKIIEKYSKSNVEIHTFN 161 (469)
Q Consensus 82 vviLAGG~GTRmg~~~PK~l~~v~~gks~L~~~~~~i~~l~~~~~~~iplviMtS~~t~e~t~~~~~~~~g~~~~i~~f~ 161 (469)
+||+|+|.||||+ +|.++++ .|+|+++|.++++....- + .+++-|. ++.+.+.++++. +.+..
T Consensus 2 ~iIpA~g~s~R~~---~K~L~~l-~GkPli~~~le~~~~~~~----d-~VvVvt~---~~~i~~~~~~~g-----~~~v~ 64 (238)
T TIGR00466 2 VIIPARLASSRLP---GKPLEDI-FGKPMIVHVAENANESGA----D-RCIVATD---DESVAQTCQKFG-----IEVCM 64 (238)
T ss_pred EEEecCCCCCCCC---CCeeccc-CCcCHHHHHHHHHHhCCC----C-eEEEEeC---HHHHHHHHHHcC-----CEEEE
Confidence 6899999999995 8999999 999999999999875421 1 2344332 456666665431 11111
Q ss_pred ecCcceecCCCCcccCCCCCCCCcccccCCCcccchhccccchHHHHHHcCCcEEEEEeCcc-ccccccH-HHHHHHHHc
Q 012172 162 QSQYPRLCADDFVPLPCKGKTDKDGWYPPGHGDVFPSLMNSGKLDALISQGKEYVFAANSDN-LGAIVDL-KILNHLIQN 239 (469)
Q Consensus 162 Q~~~P~l~~~~~~~~~~~~~~~~~~~~P~GhGd~~~~L~~sg~L~~l~~~G~~~v~v~n~DN-L~~~~dp-~~Lg~~~~~ 239 (469)
-. ...+.|+..+..++ ..+.....+++++.++|. |+..... .++..+...
T Consensus 65 ~~----------------------~~~~~Gt~r~~~~~------~~l~~~~~d~Vli~~gD~Pli~~~~I~~li~~~~~~ 116 (238)
T TIGR00466 65 TS----------------------KHHNSGTERLAEVV------EKLALKDDERIVNLQGDEPFIPKEIIRQVADNLATK 116 (238)
T ss_pred eC----------------------CCCCChhHHHHHHH------HHhCCCCCCEEEEEcCCcCcCCHHHHHHHHHHHhcC
Confidence 00 01133444343222 111111346899999999 8765432 223333223
Q ss_pred CCcceEEEeeeccCCC----cceEEE-EeCCeeE-EEEeccCCh--hhhhhccccc-cccEEEEEeEEEeHHHHHHHHHh
Q 012172 240 KNEYCMEVTPKTLADV----KGGTLI-SYEGKVQ-LLEIAQVPD--EHVNEFKSIE-KFKIFNTNNLWVNLKAIKRLVEA 310 (469)
Q Consensus 240 ~~~~~~~v~~k~~~~~----~~G~iv-~~~g~~~-ivEy~~~~~--e~~~~~~~~~-~~~~~Nt~~~~~~l~~L~~~l~~ 310 (469)
+.+++.-+++..++.+ ....++ ..+|+.- +.. +-+|. +.....+... ...+.|.|+|.++.++|+++..-
T Consensus 117 ~~~~a~~~~~~~d~~~~~~p~~vk~v~~~~g~alyfsr-~~ip~~R~~~~~~~tpq~~~~~~h~Giy~~~~~~L~~~~~~ 195 (238)
T TIGR00466 117 NVPMAALAVKIHDAEEAFNPNAVKVVLDSQGYALYFSR-SLIPFDRDFFAKRQTPVGDNLLRHIGIYGYRAGFIEEYVAW 195 (238)
T ss_pred CCCEEEEeeecCCHHHccCCCceEEEeCCCCeEEEecC-CCCCCCCCcccccccccccceeEEEEEEeCCHHHHHHHHhC
Confidence 3455555555444211 123333 3355431 111 11110 1000000001 12345999999999999998753
Q ss_pred cccccccccCCCcCCCcceehhHHHhhhHhhhcccceeEeecCccccccCCchhH
Q 012172 311 DALKMEIIPNPKEVDGIKVLQLETAAGAAIRFFDHAIGCNVHRSRFLPVKATSDL 365 (469)
Q Consensus 311 ~~~~lp~~~n~K~~~g~~~iqle~~~~d~~~~~~~~~~v~v~r~eF~pVKn~~dL 365 (469)
....| |..=+||+.-+ +..-.++.++.++...-.+|.|.+||
T Consensus 196 ~~~~l-----------e~~e~leqlr~--le~g~~i~~~~~~~~~~~~vdt~~d~ 237 (238)
T TIGR00466 196 KPCVL-----------EEIEKLEQLRV--LYYGEKIHVKIAQEVPSVGVDTQEDL 237 (238)
T ss_pred CCCcc-----------cccchhHHHhh--hhcCCceEEEEeCCCCCCCCCChHHc
Confidence 11111 12223343322 33333445555553323589999886
|
|
| >PRK13385 2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=98.47 E-value=3.8e-07 Score=88.30 Aligned_cols=67 Identities=10% Similarity=0.165 Sum_probs=49.5
Q ss_pred ceeEEEEcCCCCCcCCCCCCccccccCCCCchHHHHHHHHHHhhhhcCCcccEEEecCCCChHHHHHHHHHh
Q 012172 79 KLVVLKLNGGLGTTMGCTGPKSVIEVRNGLTFLDLIVIQIENLNAKYGCNVPLLLMNSFNTHDDTSKIIEKY 150 (469)
Q Consensus 79 k~avviLAGG~GTRmg~~~PK~l~~v~~gks~L~~~~~~i~~l~~~~~~~iplviMtS~~t~e~t~~~~~~~ 150 (469)
++++|+||||.|+|||++.||.++++ .|+|+|+|.++++..... --.+++.++........++++++
T Consensus 2 ~~~~iIlAaG~g~R~g~~~~K~l~~l-~gkpll~~~i~~~~~~~~----~~~ivVv~~~~~~~~~~~~~~~~ 68 (230)
T PRK13385 2 NYELIFLAAGQGKRMNAPLNKMWLDL-VGEPIFIHALRPFLADNR----CSKIIIVTQAQERKHVQDLMKQL 68 (230)
T ss_pred ceEEEEECCeeccccCCCCCcceeEE-CCeEHHHHHHHHHHcCCC----CCEEEEEeChhhHHHHHHHHHhc
Confidence 46889999999999999899999999 999999999999877531 11344444543334444555543
|
|
| >cd04182 GT_2_like_f GT_2_like_f is a subfamily of the glycosyltransferase family 2 (GT-2) with unknown function | Back alignment and domain information |
|---|
Probab=98.37 E-value=2.1e-06 Score=79.09 Aligned_cols=58 Identities=14% Similarity=0.197 Sum_probs=44.0
Q ss_pred eeEEEEcCCCCCcCCCCCCccccccCCCCchHHHHHHHHHHhhhhcCCcccEEEecCCCChHHHHHH
Q 012172 80 LVVLKLNGGLGTTMGCTGPKSVIEVRNGLTFLDLIVIQIENLNAKYGCNVPLLLMNSFNTHDDTSKI 146 (469)
Q Consensus 80 ~avviLAGG~GTRmg~~~PK~l~~v~~gks~L~~~~~~i~~l~~~~~~~iplviMtS~~t~e~t~~~ 146 (469)
+++||||||.|||||. ||.++++ .|+||++++++++..... -.+++.|++ .++...++
T Consensus 1 ~~~vIlAgG~s~R~g~--~K~l~~~-~g~~li~~~i~~l~~~~~-----~~i~vv~~~-~~~~~~~~ 58 (186)
T cd04182 1 IAAIILAAGRSSRMGG--NKLLLPL-DGKPLLRHALDAALAAGL-----SRVIVVLGA-EADAVRAA 58 (186)
T ss_pred CeEEEECCCCCCCCCC--CceeCee-CCeeHHHHHHHHHHhCCC-----CcEEEECCC-cHHHHHHH
Confidence 4689999999999986 9999999 999999999999987621 245555554 44444333
|
GT-2 includes diverse families of glycosyltransferases with a common GT-A type structural fold, which has two tightly associated beta/alpha/beta domains that tend to form a continuous central sheet of at least eight beta-strands. These are enzymes that catalyze the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. Glycosyltransferases have been classified into more than 90 distinct sequence based families. |
| >KOG1462 consensus Translation initiation factor 2B, gamma subunit (eIF-2Bgamma/GCD1) [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=98.36 E-value=4.1e-06 Score=85.16 Aligned_cols=67 Identities=15% Similarity=0.213 Sum_probs=52.4
Q ss_pred ceeEEEEcCCCCCcCC---CCCCccccccCCCCchHHHHHHHHHHhhhhcCCcccEEEecCCCChHHHHHHHHHhc
Q 012172 79 KLVVLKLNGGLGTTMG---CTGPKSVIEVRNGLTFLDLIVIQIENLNAKYGCNVPLLLMNSFNTHDDTSKIIEKYS 151 (469)
Q Consensus 79 k~avviLAGG~GTRmg---~~~PK~l~~v~~gks~L~~~~~~i~~l~~~~~~~iplviMtS~~t~e~t~~~~~~~~ 151 (469)
+.-.|++|||-||||- +..||.|+|| .++||+.|.+..+++.+.+ .+-++.| ....+++++.+.++.
T Consensus 9 efqavV~a~~ggt~~p~~~~~~pKaLLPI-gn~PMi~YpL~~L~~~gft---eiiVv~~--e~e~~~i~~al~~~~ 78 (433)
T KOG1462|consen 9 EFQAVVLAGGGGTRMPEVTSRLPKALLPI-GNKPMILYPLNSLEQAGFT---EIIVVVN--EDEKLDIESALGSNI 78 (433)
T ss_pred HhhhheeecCCceechhhhhhcchhhccc-CCcceeeeehhHHHhcCCe---EEEEEec--HHHHHHHHHHHhcCC
Confidence 4557899999999994 6889999999 9999999999999998755 4555553 334557778886643
|
|
| >COG2266 GTP:adenosylcobinamide-phosphate guanylyltransferase [Coenzyme metabolism] | Back alignment and domain information |
|---|
Probab=98.36 E-value=6.9e-07 Score=81.99 Aligned_cols=60 Identities=23% Similarity=0.418 Sum_probs=49.9
Q ss_pred eEEEEcCCCCCcCCCCCCccccccCCCCchHHHHHHHHHHhhhhcCCcccEEEecCCCChHHHHHHHHH
Q 012172 81 VVLKLNGGLGTTMGCTGPKSVIEVRNGLTFLDLIVIQIENLNAKYGCNVPLLLMNSFNTHDDTSKIIEK 149 (469)
Q Consensus 81 avviLAGG~GTRmg~~~PK~l~~v~~gks~L~~~~~~i~~l~~~~~~~iplviMtS~~t~e~t~~~~~~ 149 (469)
.+|+||||+|||||. .=|++++| +||||++++++.++..-. .+.+++ |. .+..|++|+++
T Consensus 2 ~~iiMAGGrGtRmg~-~EKPlleV-~GkpLI~~v~~al~~~~d----~i~v~i--sp-~tp~t~~~~~~ 61 (177)
T COG2266 2 MAIIMAGGRGTRMGR-PEKPLLEV-CGKPLIDRVLEALRKIVD----EIIVAI--SP-HTPKTKEYLES 61 (177)
T ss_pred ceEEecCCcccccCC-CcCcchhh-CCccHHHHHHHHHHhhcC----cEEEEe--CC-CCHhHHHHHHh
Confidence 579999999999997 67889999 999999999999988432 344444 88 67889999976
|
|
| >TIGR03310 matur_ygfJ molybdenum hydroxylase accessory protein, YgfJ family | Back alignment and domain information |
|---|
Probab=98.31 E-value=3.8e-06 Score=77.97 Aligned_cols=48 Identities=25% Similarity=0.326 Sum_probs=39.5
Q ss_pred EEEEcCCCCCcCCCCCCccccccCCCCchHHHHHHHHHHhhhhcCCcccEEEecCC
Q 012172 82 VLKLNGGLGTTMGCTGPKSVIEVRNGLTFLDLIVIQIENLNAKYGCNVPLLLMNSF 137 (469)
Q Consensus 82 vviLAGG~GTRmg~~~PK~l~~v~~gks~L~~~~~~i~~l~~~~~~~iplviMtS~ 137 (469)
+||||||.||||| .||.++++ .|+||++++++++.+..- -.+++.+++
T Consensus 2 ~iIla~G~s~R~g--~~K~ll~~-~g~pll~~~i~~l~~~~~-----~~iivv~~~ 49 (188)
T TIGR03310 2 AIILAAGLSSRMG--QNKLLLPY-KGKTILEHVVDNALRLFF-----DEVILVLGH 49 (188)
T ss_pred eEEECCCCcccCC--CCceeccc-CCeeHHHHHHHHHHHcCC-----CcEEEEeCC
Confidence 6899999999998 59999999 999999999999886531 245555555
|
Members of this protein family are probable accessory proteins for the biosynthesis of enzymes related to xanthine dehydrogenase. Comparative genomics suggests a role in the maturation of selenium-dependent molybdenum hydroxylases, although a tenuous alternative hypothesis is a role for this protein (with a requirement for SelD, the selenium donor protein in the selenocysteine and selenouridine biosynthesis pathways) metabolizing a selenium-containing substrate such as selenate. |
| >cd02503 MobA MobA catalyzes the formation of molybdopterin guanine dinucleotide | Back alignment and domain information |
|---|
Probab=98.27 E-value=6.5e-06 Score=76.17 Aligned_cols=39 Identities=26% Similarity=0.506 Sum_probs=35.7
Q ss_pred eeEEEEcCCCCCcCCCCCCccccccCCCCchHHHHHHHHHHh
Q 012172 80 LVVLKLNGGLGTTMGCTGPKSVIEVRNGLTFLDLIVIQIENL 121 (469)
Q Consensus 80 ~avviLAGG~GTRmg~~~PK~l~~v~~gks~L~~~~~~i~~l 121 (469)
+++||||||+|+|||. ||.++++ .|+||++++++++...
T Consensus 1 ~~~iILAgG~s~Rmg~--~K~ll~~-~g~~ll~~~i~~l~~~ 39 (181)
T cd02503 1 ITGVILAGGKSRRMGG--DKALLEL-GGKPLLEHVLERLKPL 39 (181)
T ss_pred CcEEEECCCccccCCC--CceeeEE-CCEEHHHHHHHHHHhh
Confidence 3579999999999996 9999999 8999999999998875
|
The prokaryotic enzyme molybdopterin-guanine dinucleotide biosynthesis protein A (MobA). All mononuclear molybdoenzymes bind molybdenum in complex with an organic cofactor termed molybdopterin (MPT). In many bacteria, including Escherichia coli, molybdopterin can be further modified by attachment of a GMP group to the terminal phosphate of molybdopterin to form molybdopterin guanine dinucleotide (MGD). This GMP attachment step is catalyzed by MobA, by linking a guanosine 5'-phosphate to MPT forming molybdopterin guanine dinucleotide. This reaction requires GTP, MgCl2, and the MPT form of the cofactor. It is a reaction unique to prokaryotes, and therefore may represent a potential drug target. |
| >COG0836 {ManC} Mannose-1-phosphate guanylyltransferase [Cell envelope biogenesis, outer membrane] | Back alignment and domain information |
|---|
Probab=98.25 E-value=3.5e-05 Score=77.24 Aligned_cols=194 Identities=17% Similarity=0.230 Sum_probs=109.1
Q ss_pred eeEEEEcCCCCCcC----CCCCCccccccCCCCchHHHHHHHHHHhhhhcCCcccEEEecCCCChHHHHHHHHHhcCCCC
Q 012172 80 LVVLKLNGGLGTTM----GCTGPKSVIEVRNGLTFLDLIVIQIENLNAKYGCNVPLLLMNSFNTHDDTSKIIEKYSKSNV 155 (469)
Q Consensus 80 ~avviLAGG~GTRm----g~~~PK~l~~v~~gks~L~~~~~~i~~l~~~~~~~iplviMtS~~t~e~t~~~~~~~~g~~~ 155 (469)
+.-||||||.|||| +...||-.+++.+++||||..++++..+... .=|++| |+..-...+++-+.+-
T Consensus 2 ~~pvIlaGG~GsRLWPLSR~~~PKQFl~L~~~~Sllq~T~~R~~~l~~~---~~~~vV-tne~~~f~v~eql~e~----- 72 (333)
T COG0836 2 MIPVILAGGSGSRLWPLSRKDYPKQFLKLFGDLSLLQQTVKRLAFLGDI---EEPLVV-TNEKYRFIVKEQLPEI----- 72 (333)
T ss_pred ceeEEEeCCCccccCCcCcccCCccceeeCCCCcHHHHHHHHHhhcCCc---cCeEEE-eCHHHHHHHHHHHhhh-----
Confidence 45689999999999 5688999999988999999999999887532 345555 3331112222222210
Q ss_pred ceEEEEecCcceecCCCCcccCCCCCCCCcccccCCCcccchhccccchHHHHHHcCCcEEEEEeCccccccccHHHHHH
Q 012172 156 EIHTFNQSQYPRLCADDFVPLPCKGKTDKDGWYPPGHGDVFPSLMNSGKLDALISQGKEYVFAANSDNLGAIVDLKILNH 235 (469)
Q Consensus 156 ~i~~f~Q~~~P~l~~~~~~~~~~~~~~~~~~~~P~GhGd~~~~L~~sg~L~~l~~~G~~~v~v~n~DNL~~~~dp~~Lg~ 235 (469)
|.=...+ ++++ |-|-=-+ +...-+.+....+.|-.-+.|+-.|-+++.. ..|...
T Consensus 73 ----------~~~~~~~-illE-----------P~gRnTA--pAIA~aa~~~~~~~~d~~~lVlpsDH~I~d~-~af~~a 127 (333)
T COG0836 73 ----------DIENAAG-IILE-----------PEGRNTA--PAIALAALSATAEGGDALVLVLPSDHVIADE-EAFLNA 127 (333)
T ss_pred ----------hhccccc-eEec-----------cCCCCcH--HHHHHHHHHHHHhCCCcEEEEecCcceeccH-HHHHHH
Confidence 0000111 2222 3332211 2222223344444553468899999977753 334332
Q ss_pred H------HHcCCcceEEE-eeeccCCCcceEEEEe----C-CeeEEEEeccCChhh-hhhccccccccEEEEEeEEEeHH
Q 012172 236 L------IQNKNEYCMEV-TPKTLADVKGGTLISY----E-GKVQLLEIAQVPDEH-VNEFKSIEKFKIFNTNNLWVNLK 302 (469)
Q Consensus 236 ~------~~~~~~~~~~v-~~k~~~~~~~G~iv~~----~-g~~~ivEy~~~~~e~-~~~~~~~~~~~~~Nt~~~~~~l~ 302 (469)
. ++++ ..+.. +.-+.|..+||-|-.- + +-..|-+.-+=|+.+ ++++-...+| +.|+|+++|+.+
T Consensus 128 v~~A~~~A~~g--~lVTfGI~Pt~PeTGYGYIe~G~~~~~~~~~~V~~FvEKPd~etA~~yv~sG~y-~WNSGmF~Fra~ 204 (333)
T COG0836 128 VKKAEKAAEEG--GIVTFGIPPTRPETGYGYIETGESIAENGVYKVDRFVEKPDLETAKKYVESGEY-LWNSGMFLFRAS 204 (333)
T ss_pred HHHHHHHHHcC--CEEEEecCCCCCccCcceeecCcccccCCceEeeeeeeCCCHHHHHHHHHcCce-EeeccceEEEHH
Confidence 2 2233 22322 4456788899987651 1 333333333333322 2223222333 679999999999
Q ss_pred HHHHHHHh
Q 012172 303 AIKRLVEA 310 (469)
Q Consensus 303 ~L~~~l~~ 310 (469)
.+.+-+.+
T Consensus 205 ~~l~e~~~ 212 (333)
T COG0836 205 VFLEELKK 212 (333)
T ss_pred HHHHHHHh
Confidence 98887776
|
|
| >PRK15460 cpsB mannose-1-phosphate guanyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=98.21 E-value=4.3e-05 Score=81.84 Aligned_cols=191 Identities=13% Similarity=0.168 Sum_probs=106.1
Q ss_pred ceeEEEEcCCCCCcCCC----CCCccccccCCCCchHHHHHHHHHHhhhhcCCcccEEEecCCCChHHHHHHHHHhcCCC
Q 012172 79 KLVVLKLNGGLGTTMGC----TGPKSVIEVRNGLTFLDLIVIQIENLNAKYGCNVPLLLMNSFNTHDDTSKIIEKYSKSN 154 (469)
Q Consensus 79 k~avviLAGG~GTRmg~----~~PK~l~~v~~gks~L~~~~~~i~~l~~~~~~~iplviMtS~~t~e~t~~~~~~~~g~~ 154 (469)
++-+||||||.||||-. ..||.++++.+++||||+.++++..+.. .=++++ |+..-.+.+++.+......
T Consensus 5 ~~~~vIlaGG~GtRlwPlS~~~~PKq~l~l~~~~sllq~t~~r~~~~~~----~~~iiv-t~~~~~~~v~~ql~~~~~~- 78 (478)
T PRK15460 5 KLYPVVMAGGSGSRLWPLSRVLYPKQFLCLKGDLTMLQTTICRLNGVEC----ESPVVI-CNEQHRFIVAEQLRQLNKL- 78 (478)
T ss_pred ceEEEEECCCCccccccCCCCCCCcceeECCCCCCHHHHHHHHHHhCCC----CCcEEE-eCHHHHHHHHHHHHhcCCc-
Confidence 36789999999999972 3699999996678999999999887642 224444 6653334444444331100
Q ss_pred CceEEEEecCcceecCCCCcccCCCCCCCCcccccCCCcccchhccccchHHHHHHc--C-CcEEEEEeCccccccccHH
Q 012172 155 VEIHTFNQSQYPRLCADDFVPLPCKGKTDKDGWYPPGHGDVFPSLMNSGKLDALISQ--G-KEYVFAANSDNLGAIVDLK 231 (469)
Q Consensus 155 ~~i~~f~Q~~~P~l~~~~~~~~~~~~~~~~~~~~P~GhGd~~~~L~~sg~L~~l~~~--G-~~~v~v~n~DNL~~~~dp~ 231 (469)
...++++ |-|..-+ +...-+.+ .+.++ + -.-++|+..|.++...+ .
T Consensus 79 ----------------~~~ii~E-----------P~~rnTA--paialaa~-~~~~~~~~~~~~v~vlPaDH~I~d~~-~ 127 (478)
T PRK15460 79 ----------------TENIILE-----------PAGRNTA--PAIALAAL-AAKRHSPESDPLMLVLAADHVIADED-A 127 (478)
T ss_pred ----------------cccEEec-----------CCCCChH--HHHHHHHH-HHHHhcCCCCCeEEEeccccccCCHH-H
Confidence 0122222 2332222 11111111 12222 2 24788999999776532 2
Q ss_pred HHHHH-----HHcCCcceEEE-eeeccCCCcceEEEEe---C-----CeeE---EEEeccCChhhhhhccccccccEEEE
Q 012172 232 ILNHL-----IQNKNEYCMEV-TPKTLADVKGGTLISY---E-----GKVQ---LLEIAQVPDEHVNEFKSIEKFKIFNT 294 (469)
Q Consensus 232 ~Lg~~-----~~~~~~~~~~v-~~k~~~~~~~G~iv~~---~-----g~~~---ivEy~~~~~e~~~~~~~~~~~~~~Nt 294 (469)
|.... ..+. ...+.. +.-+.|..+||=|-.. + +-.. .+|--+.. .+..+-. .+--+.|+
T Consensus 128 F~~~i~~A~~~A~~-~~lvt~GI~Pt~PeTgyGYI~~g~~~~~~~~~~~~~V~~F~EKPd~~--tA~~yl~-~G~y~WNs 203 (478)
T PRK15460 128 FRAAVRNAMPYAEA-GKLVTFGIVPDLPETGYGYIRRGEVSAGEQDTVAFEVAQFVEKPNLE--TAQAYVA-SGEYYWNS 203 (478)
T ss_pred HHHHHHHHHHHHhc-CCEEEEecCCCCCCCCCCeEEeCCccccccccCceEeeEEEeCCCHH--HHHHHHH-cCCEEEec
Confidence 32221 1122 333333 6667888999977542 1 2122 34443322 2223322 22225699
Q ss_pred EeEEEeHHHHHHHHHh
Q 012172 295 NNLWVNLKAIKRLVEA 310 (469)
Q Consensus 295 ~~~~~~l~~L~~~l~~ 310 (469)
|+++++.+.+.+.+++
T Consensus 204 GiF~~~a~~~l~~~~~ 219 (478)
T PRK15460 204 GMFLFRAGRYLEELKK 219 (478)
T ss_pred ceeheeHHHHHHHHHH
Confidence 9999999998777765
|
|
| >PLN02728 2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase | Back alignment and domain information |
|---|
Probab=98.18 E-value=2.1e-06 Score=84.60 Aligned_cols=43 Identities=23% Similarity=0.423 Sum_probs=40.2
Q ss_pred cceeEEEEcCCCCCcCCCCCCccccccCCCCchHHHHHHHHHHh
Q 012172 78 DKLVVLKLNGGLGTTMGCTGPKSVIEVRNGLTFLDLIVIQIENL 121 (469)
Q Consensus 78 ~k~avviLAGG~GTRmg~~~PK~l~~v~~gks~L~~~~~~i~~l 121 (469)
.++++||||||.|||||++.||.++++ .|+|+|+|.++.+..+
T Consensus 23 ~~i~aIILAAG~gsRmg~~~pKqll~l-~Gkpll~~tl~~~~~~ 65 (252)
T PLN02728 23 KSVSVILLAGGVGKRMGANMPKQYLPL-LGQPIALYSLYTFARM 65 (252)
T ss_pred CceEEEEEcccccccCCCCCCcceeEE-CCeEHHHHHHHHHHhC
Confidence 468999999999999999999999999 9999999999998875
|
|
| >PRK09382 ispDF bifunctional 2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase/2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase protein; Provisional | Back alignment and domain information |
|---|
Probab=98.18 E-value=1.8e-05 Score=82.52 Aligned_cols=44 Identities=9% Similarity=0.185 Sum_probs=40.7
Q ss_pred cceeEEEEcCCCCCcCCCCCCccccccCCCCchHHHHHHHHHHhh
Q 012172 78 DKLVVLKLNGGLGTTMGCTGPKSVIEVRNGLTFLDLIVIQIENLN 122 (469)
Q Consensus 78 ~k~avviLAGG~GTRmg~~~PK~l~~v~~gks~L~~~~~~i~~l~ 122 (469)
.++++|+||||.|||||...||.++++ .|+|+++|.++.+.+..
T Consensus 4 m~v~aIILAAG~GsRmg~~~pKqll~l-~GkPll~~tl~~l~~~~ 47 (378)
T PRK09382 4 SDISLVIVAAGRSTRFSAEVKKQWLRI-GGKPLWLHVLENLSSAP 47 (378)
T ss_pred CcceEEEECCCCCccCCCCCCeeEEEE-CCeeHHHHHHHHHhcCC
Confidence 468899999999999998899999999 99999999999998764
|
|
| >PRK02726 molybdopterin-guanine dinucleotide biosynthesis protein A; Provisional | Back alignment and domain information |
|---|
Probab=98.17 E-value=1.7e-05 Score=75.34 Aligned_cols=40 Identities=28% Similarity=0.422 Sum_probs=36.6
Q ss_pred ceeEEEEcCCCCCcCCCCCCccccccCCCCchHHHHHHHHHHh
Q 012172 79 KLVVLKLNGGLGTTMGCTGPKSVIEVRNGLTFLDLIVIQIENL 121 (469)
Q Consensus 79 k~avviLAGG~GTRmg~~~PK~l~~v~~gks~L~~~~~~i~~l 121 (469)
++.+||||||+|+|||. +|.++++ .|+|++++.++.+...
T Consensus 7 ~~~~vILAgG~s~Rmg~--~K~ll~~-~g~~ll~~~i~~l~~~ 46 (200)
T PRK02726 7 NLVALILAGGKSSRMGQ--DKALLPW-QGVPLLQRVARIAAAC 46 (200)
T ss_pred CceEEEEcCCCcccCCC--CceeeEE-CCEeHHHHHHHHHHhh
Confidence 67899999999999995 7999999 8999999999999754
|
|
| >PF01128 IspD: 2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase; InterPro: IPR001228 4-diphosphocytidyl-2C-methyl-D-erythritol synthase, a bacterial ispD protein, catalyzes the third step of the deoxyxylulose-5-phosphate pathway (DXP) of isoprenoid biosynthesis; the formation of 4-diphosphocytidyl-2C-methyl-D-erythritol from CTP and 2C-methyl-D-erythritol 4-phosphate [] | Back alignment and domain information |
|---|
Probab=98.16 E-value=3.3e-06 Score=81.65 Aligned_cols=64 Identities=19% Similarity=0.344 Sum_probs=47.2
Q ss_pred eeEEEEcCCCCCcCCCCCCccccccCCCCchHHHHHHHHHHhhhhcCCccc-EEEecCCCChHHHHHHHHH
Q 012172 80 LVVLKLNGGLGTTMGCTGPKSVIEVRNGLTFLDLIVIQIENLNAKYGCNVP-LLLMNSFNTHDDTSKIIEK 149 (469)
Q Consensus 80 ~avviLAGG~GTRmg~~~PK~l~~v~~gks~L~~~~~~i~~l~~~~~~~ip-lviMtS~~t~e~t~~~~~~ 149 (469)
+++|+||||.|+|||++.||-.+++ .|+|+|.|.++.+.+.. .+- +++..+....+.+++.+.+
T Consensus 1 V~aIilAaG~G~R~g~~~pKQf~~l-~Gkpvl~~tl~~f~~~~-----~i~~Ivvv~~~~~~~~~~~~~~~ 65 (221)
T PF01128_consen 1 VAAIILAAGSGSRMGSGIPKQFLEL-GGKPVLEYTLEAFLASP-----EIDEIVVVVPPEDIDYVEELLSK 65 (221)
T ss_dssp EEEEEEESS-STCCTSSS-GGGSEE-TTEEHHHHHHHHHHTTT-----TESEEEEEESGGGHHHHHHHHHH
T ss_pred CEEEEeCCccchhcCcCCCCeeeEE-CCeEeHHHHHHHHhcCC-----CCCeEEEEecchhHHHHHHhhcC
Confidence 5799999999999999999999999 99999999999998764 232 3333344334556666554
|
The isoprenoid pathway is a well known target for anti-infective drug development [, ].; GO: 0003824 catalytic activity, 0008299 isoprenoid biosynthetic process; PDB: 1VGW_F 1VGZ_A 1W77_A 2YC3_A 2YCM_A 2YC5_A 1VGU_A 3N9W_B 1I52_A 1H3M_B .... |
| >PRK00560 molybdopterin-guanine dinucleotide biosynthesis protein A; Provisional | Back alignment and domain information |
|---|
Probab=98.14 E-value=4.3e-06 Score=79.16 Aligned_cols=41 Identities=22% Similarity=0.424 Sum_probs=37.0
Q ss_pred cceeEEEEcCCCCCcCCCCCCccccccCCC-CchHHHHHHHHHHh
Q 012172 78 DKLVVLKLNGGLGTTMGCTGPKSVIEVRNG-LTFLDLIVIQIENL 121 (469)
Q Consensus 78 ~k~avviLAGG~GTRmg~~~PK~l~~v~~g-ks~L~~~~~~i~~l 121 (469)
.++++||||||+|+||| .||.++++ .| +|+++++++++..+
T Consensus 7 ~~i~~vILAgG~s~RmG--~~K~ll~~-~g~~~ll~~~i~~l~~~ 48 (196)
T PRK00560 7 DNIPCVILAGGKSSRMG--ENKALLPF-GSYSSLLEYQYTRLLKL 48 (196)
T ss_pred cCceEEEECCcccccCC--CCceEEEe-CCCCcHHHHHHHHHHHh
Confidence 36889999999999998 58999999 77 99999999999765
|
|
| >TIGR03202 pucB xanthine dehydrogenase accessory protein pucB | Back alignment and domain information |
|---|
Probab=98.11 E-value=8.5e-06 Score=76.31 Aligned_cols=38 Identities=18% Similarity=0.147 Sum_probs=34.2
Q ss_pred eEEEEcCCCCCcCCCCCCccccccCCCCchHHHHHHHHHHh
Q 012172 81 VVLKLNGGLGTTMGCTGPKSVIEVRNGLTFLDLIVIQIENL 121 (469)
Q Consensus 81 avviLAGG~GTRmg~~~PK~l~~v~~gks~L~~~~~~i~~l 121 (469)
++||||||+|+|||. +|.++++ .|+||+++.++.+.+.
T Consensus 2 ~~vILAgG~s~Rmg~--~K~ll~~-~g~~ll~~~i~~~~~~ 39 (190)
T TIGR03202 2 VAIYLAAGQSRRMGE--NKLALPL-GETTLGSASLKTALSS 39 (190)
T ss_pred eEEEEcCCccccCCC--Cceecee-CCccHHHHHHHHHHhC
Confidence 579999999999996 7999999 8999999999887654
|
In Bacillus subtilis the expression of this protein, located in an operon with the structural subunits of xanthine dehydrogenase, has been found to be essential for XDH activity. Some members of this family appear to have a distant relationship to the MobA protein involved in molybdopterin biosynthesis, although this may be coincidental. |
| >TIGR02665 molyb_mobA molybdopterin-guanine dinucleotide biosynthesis protein A, proteobacterial | Back alignment and domain information |
|---|
Probab=98.11 E-value=2.7e-05 Score=72.32 Aligned_cols=39 Identities=21% Similarity=0.451 Sum_probs=35.2
Q ss_pred eeEEEEcCCCCCcCCCCCCccccccCCCCchHHHHHHHHHH
Q 012172 80 LVVLKLNGGLGTTMGCTGPKSVIEVRNGLTFLDLIVIQIEN 120 (469)
Q Consensus 80 ~avviLAGG~GTRmg~~~PK~l~~v~~gks~L~~~~~~i~~ 120 (469)
+++|+||||+|||||. .||.++++ .|+||++++++.+..
T Consensus 1 ~~~iILAgG~s~Rmg~-~~K~l~~i-~g~pll~~~l~~l~~ 39 (186)
T TIGR02665 1 ISGVILAGGRARRMGG-RDKGLVEL-GGKPLIEHVLARLRP 39 (186)
T ss_pred CeEEEEcCCccccCCC-CCCceeEE-CCEEHHHHHHHHHHh
Confidence 4689999999999994 39999999 999999999999864
|
In many molybdopterin-containing enzymes, including nitrate reductase and dimethylsulfoxide reductase, the cofactor is molybdopterin-guanine dinucleotide. The family described here contains MobA, molybdopterin-guanine dinucleotide biosynthesis protein A, from the Proteobacteria only. MobA can reconstitute molybdopterin-guanine dinucleotide biosynthesis without the product of the neighboring gene MobB. The probable MobA proteins of other lineages differ sufficiently that they are not included in scope of this family. |
| >PRK14489 putative bifunctional molybdopterin-guanine dinucleotide biosynthesis protein MobA/MobB; Provisional | Back alignment and domain information |
|---|
Probab=98.06 E-value=3.1e-05 Score=80.47 Aligned_cols=42 Identities=21% Similarity=0.385 Sum_probs=37.6
Q ss_pred cceeEEEEcCCCCCcCCCCCCccccccCCCCchHHHHHHHHHHh
Q 012172 78 DKLVVLKLNGGLGTTMGCTGPKSVIEVRNGLTFLDLIVIQIENL 121 (469)
Q Consensus 78 ~k~avviLAGG~GTRmg~~~PK~l~~v~~gks~L~~~~~~i~~l 121 (469)
.++++|+||||+||||| ..||.++++ .|+||++++++++...
T Consensus 4 ~~i~~VILAgG~s~Rmg-g~~K~ll~i-~Gkpll~~~i~~l~~~ 45 (366)
T PRK14489 4 SQIAGVILAGGLSRRMN-GRDKALILL-GGKPLIERVVDRLRPQ 45 (366)
T ss_pred CCceEEEEcCCcccCCC-CCCCceeEE-CCeeHHHHHHHHHHhh
Confidence 47889999999999997 379999999 8999999999998753
|
|
| >COG0746 MobA Molybdopterin-guanine dinucleotide biosynthesis protein A [Coenzyme metabolism] | Back alignment and domain information |
|---|
Probab=98.04 E-value=9.7e-06 Score=76.74 Aligned_cols=106 Identities=21% Similarity=0.346 Sum_probs=70.9
Q ss_pred cceeEEEEcCCCCCcCCCCCCccccccCCCCchHHHHHHHHHHhhhhcCCcccEEEecCCCChHHHHHHHHHhcCCCCce
Q 012172 78 DKLVVLKLNGGLGTTMGCTGPKSVIEVRNGLTFLDLIVIQIENLNAKYGCNVPLLLMNSFNTHDDTSKIIEKYSKSNVEI 157 (469)
Q Consensus 78 ~k~avviLAGG~GTRmg~~~PK~l~~v~~gks~L~~~~~~i~~l~~~~~~~iplviMtS~~t~e~t~~~~~~~~g~~~~i 157 (469)
..+..||||||+|+|| .+|.++++ .|+|+++|++++++... . .++|. +....+. +... |
T Consensus 3 ~~~~~vILAGG~srRm---~dK~l~~~-~g~~lie~v~~~L~~~~-----~-~vvi~-~~~~~~~---~~~~--g----- 61 (192)
T COG0746 3 TPMTGVILAGGKSRRM---RDKALLPL-NGRPLIEHVIDRLRPQV-----D-VVVIS-ANRNQGR---YAEF--G----- 61 (192)
T ss_pred CCceEEEecCCccccc---ccccccee-CCeEHHHHHHHHhcccC-----C-EEEEe-CCCchhh---hhcc--C-----
Confidence 3678999999999999 89999999 99999999999998874 4 56663 2322221 2211 1
Q ss_pred EEEEecCcceecCCCCcccCCCCCCCCcccccCCCcccchhccccchHHHHHHcCCcEEEEEeCcc-ccccccHHHHHHH
Q 012172 158 HTFNQSQYPRLCADDFVPLPCKGKTDKDGWYPPGHGDVFPSLMNSGKLDALISQGKEYVFAANSDN-LGAIVDLKILNHL 236 (469)
Q Consensus 158 ~~f~Q~~~P~l~~~~~~~~~~~~~~~~~~~~P~GhGd~~~~L~~sg~L~~l~~~G~~~v~v~n~DN-L~~~~dp~~Lg~~ 236 (469)
.|.+.+ ..+|.| +| .|++..|...+.+|++|.-+|+ +... .++-++
T Consensus 62 -------~~vv~D-----------------~~~~~G----PL--~Gi~~al~~~~~~~~~v~~~D~P~i~~---~lv~~l 108 (192)
T COG0746 62 -------LPVVPD-----------------ELPGFG----PL--AGILAALRHFGTEWVLVLPCDMPFIPP---ELVERL 108 (192)
T ss_pred -------Cceeec-----------------CCCCCC----CH--HHHHHHHHhCCCCeEEEEecCCCCCCH---HHHHHH
Confidence 111110 123332 22 4667777788889999999999 7664 335555
Q ss_pred H
Q 012172 237 I 237 (469)
Q Consensus 237 ~ 237 (469)
.
T Consensus 109 ~ 109 (192)
T COG0746 109 L 109 (192)
T ss_pred H
Confidence 4
|
|
| >COG1210 GalU UDP-glucose pyrophosphorylase [Cell envelope biogenesis, outer membrane] | Back alignment and domain information |
|---|
Probab=97.87 E-value=0.0012 Score=65.12 Aligned_cols=207 Identities=16% Similarity=0.164 Sum_probs=123.6
Q ss_pred EEEEcCCCCCcCCC---CCCccccccCCCCchHHHHHHHHHHhhhhcCCcccEEEecCCCChHHHHHHHHHhc-------
Q 012172 82 VLKLNGGLGTTMGC---TGPKSVIEVRNGLTFLDLIVIQIENLNAKYGCNVPLLLMNSFNTHDDTSKIIEKYS------- 151 (469)
Q Consensus 82 vviLAGG~GTRmg~---~~PK~l~~v~~gks~L~~~~~~i~~l~~~~~~~iplviMtS~~t~e~t~~~~~~~~------- 151 (469)
+|+-|+|+|||+=- ..||=|+|| -+||.+|++++.+.+.+-+ .++|.||. ....+.+||....
T Consensus 7 AViPaAGlGTRfLPATKaiPKEMLPI-vdKP~IqYiVeEa~~aGIe-----~i~iVTgr-~K~~IeDhFD~s~ELE~~L~ 79 (291)
T COG1210 7 AVIPAAGLGTRFLPATKAIPKEMLPI-VDKPLIQYIVEEAVAAGIE-----EILIVTGR-GKRAIEDHFDTSYELENTLE 79 (291)
T ss_pred EEEEccCcccccccccccCchhhccc-cCchhHHHHHHHHHHcCCC-----EEEEEecC-CcchHHHhCcCcHHHHHHHH
Confidence 68999999999953 679999999 8899999999999888633 45555665 4445555553211
Q ss_pred ------------C--CCCceEEEEecCcceecCCCCcccCCCCCCCCcccccCCCcccchhccccchHHHHHHcCCcEEE
Q 012172 152 ------------K--SNVEIHTFNQSQYPRLCADDFVPLPCKGKTDKDGWYPPGHGDVFPSLMNSGKLDALISQGKEYVF 217 (469)
Q Consensus 152 ------------g--~~~~i~~f~Q~~~P~l~~~~~~~~~~~~~~~~~~~~P~GhGd~~~~L~~sg~L~~l~~~G~~~v~ 217 (469)
. ...++.+..|. .|.|-||+.... ..|. |-+.+.
T Consensus 80 ~~~K~~~L~~v~~i~~~~~i~~vRQ~------------------------e~~GLGhAVl~A------~~~v--g~EpFa 127 (291)
T COG1210 80 KRGKRELLEEVRSIPPLVTISFVRQK------------------------EPLGLGHAVLCA------KPFV--GDEPFA 127 (291)
T ss_pred HhCHHHHHHHHHhcccCceEEEEecC------------------------CCCcchhHHHhh------hhhc--CCCceE
Confidence 0 11346666666 379999996432 2343 558777
Q ss_pred EEeCccccccccHHHHHHHH----HcCCcc-eEEEeeeccCCCcceEEE----EeCCeeE---EEEeccCChhhhhhccc
Q 012172 218 AANSDNLGAIVDLKILNHLI----QNKNEY-CMEVTPKTLADVKGGTLI----SYEGKVQ---LLEIAQVPDEHVNEFKS 285 (469)
Q Consensus 218 v~n~DNL~~~~dp~~Lg~~~----~~~~~~-~~~v~~k~~~~~~~G~iv----~~~g~~~---ivEy~~~~~e~~~~~~~ 285 (469)
|+-.|.|+....| .+.-|+ +.+... +++=+++ ..-.+||++- ..+|..+ +||--.. ++
T Consensus 128 VlL~Ddl~~~~~~-~l~qmi~~ye~~g~svi~v~ev~~-e~v~kYGvi~~g~~~~~~~~~v~~~VEKP~~--~~------ 197 (291)
T COG1210 128 VLLPDDLVDSEKP-CLKQMIELYEETGGSVIGVEEVPP-EDVSKYGVIDPGEPVEKGVYKVKGMVEKPKP--EE------ 197 (291)
T ss_pred EEeCCeeecCCch-HHHHHHHHHHHhCCcEEEEEECCH-HHCcccceEecCccccCCeEEEEEEEECCCC--CC------
Confidence 8888885554333 333333 233322 2222322 4457899997 2344233 5665421 11
Q ss_pred cccccEEEEEeEEEeHHHHHHHHHhcccccccccCCCcCCC-cceehhHHHhhhHhhhcccceeEeec
Q 012172 286 IEKFKIFNTNNLWVNLKAIKRLVEADALKMEIIPNPKEVDG-IKVLQLETAAGAAIRFFDHAIGCNVH 352 (469)
Q Consensus 286 ~~~~~~~Nt~~~~~~l~~L~~~l~~~~~~lp~~~n~K~~~g-~~~iqle~~~~d~~~~~~~~~~v~v~ 352 (469)
..-.+.=.|-|.++-+.... |++ . .+| ...|||..++...++. ..+.++...
T Consensus 198 -APSnlai~GRYil~p~IFd~-L~~----------~--~~G~ggEiQLTDai~~L~~~-~~v~a~~~~ 250 (291)
T COG1210 198 -APSNLAIVGRYVLTPEIFDI-LEE----------T--KPGAGGEIQLTDAIKKLLKK-EPVLAYVFE 250 (291)
T ss_pred -CCcceeeeeeeecCHHHHHH-Hhh----------C--CCCCCCEeeHHHHHHHHHhh-CcEEEEEec
Confidence 11134566778888776543 332 1 112 3578888888776665 455555443
|
|
| >PRK14490 putative bifunctional molybdopterin-guanine dinucleotide biosynthesis protein MobB/MobA; Provisional | Back alignment and domain information |
|---|
Probab=97.83 E-value=8.4e-05 Score=77.30 Aligned_cols=40 Identities=23% Similarity=0.243 Sum_probs=36.3
Q ss_pred ceeEEEEcCCCCCcCCCCCCccccccCCCCchHHHHHHHHHHh
Q 012172 79 KLVVLKLNGGLGTTMGCTGPKSVIEVRNGLTFLDLIVIQIENL 121 (469)
Q Consensus 79 k~avviLAGG~GTRmg~~~PK~l~~v~~gks~L~~~~~~i~~l 121 (469)
++..||||||+|+|||. +|.++++ .|+||++++++.+...
T Consensus 174 ~i~~iILAGG~SsRmG~--~K~ll~~-~Gk~ll~~~l~~l~~~ 213 (369)
T PRK14490 174 PLSGLVLAGGRSSRMGS--DKALLSY-HESNQLVHTAALLRPH 213 (369)
T ss_pred CceEEEEcCCccccCCC--CcEEEEE-CCccHHHHHHHHHHhh
Confidence 55899999999999994 9999999 9999999999999764
|
|
| >TIGR03584 PseF pseudaminic acid CMP-transferase | Back alignment and domain information |
|---|
Probab=97.81 E-value=0.0015 Score=63.14 Aligned_cols=215 Identities=11% Similarity=0.089 Sum_probs=120.2
Q ss_pred EEEEcCCCCCcCCCCCCccccccCCCCchHHHHHHHHHHhhhhcCCcccEEEecCCCChHHHHHHHHHhcCCCCceEEEE
Q 012172 82 VLKLNGGLGTTMGCTGPKSVIEVRNGLTFLDLIVIQIENLNAKYGCNVPLLLMNSFNTHDDTSKIIEKYSKSNVEIHTFN 161 (469)
Q Consensus 82 vviLAGG~GTRmg~~~PK~l~~v~~gks~L~~~~~~i~~l~~~~~~~iplviMtS~~t~e~t~~~~~~~~g~~~~i~~f~ 161 (469)
+||+|+|.++||+ .|-+.++ .|+|+++|.++++.+... --.+++ +++ ++++.+..+++ | ..+. |.
T Consensus 2 aiIpArG~Skr~~---~Knl~~l-~GkpLi~~ti~~a~~s~~----~d~IvV-std--~~~i~~~a~~~-g--~~v~-~~ 66 (222)
T TIGR03584 2 AIIPARGGSKRIP---RKNIKPF-CGKPMIAYSIEAALNSGL----FDKVVV-STD--DEEIAEVAKSY-G--ASVP-FL 66 (222)
T ss_pred EEEccCCCCCCCC---Cccchhc-CCcCHHHHHHHHHHhCCC----CCEEEE-eCC--CHHHHHHHHHc-C--CEeE-Ee
Confidence 5899999999996 6999999 999999999999987541 112344 233 46677766654 1 1121 11
Q ss_pred ecCcceecCCCCcccCCCCCCCCcccccCCCcccchhccccchHHHHHH-cCCcEEEEEeCcc-ccccccH-HHHHHHHH
Q 012172 162 QSQYPRLCADDFVPLPCKGKTDKDGWYPPGHGDVFPSLMNSGKLDALIS-QGKEYVFAANSDN-LGAIVDL-KILNHLIQ 238 (469)
Q Consensus 162 Q~~~P~l~~~~~~~~~~~~~~~~~~~~P~GhGd~~~~L~~sg~L~~l~~-~G~~~v~v~n~DN-L~~~~dp-~~Lg~~~~ 238 (469)
- | ..+..--.|..+++. .+ ++.+.. ...++++++++|. |....+. .++..+.+
T Consensus 67 r---~----------------~~l~~d~~~~~~si~----~~-l~~l~~~~~~d~v~~l~~tsPl~~~~~I~~~i~~~~~ 122 (222)
T TIGR03584 67 R---P----------------KELADDFTGTAPVVK----HA-IEELKLQKQYDHACCIYATAPFLQAKILKEAFELLKQ 122 (222)
T ss_pred C---h----------------HHHcCCCCCchHHHH----HH-HHHHhhcCCCCEEEEecCCCCcCCHHHHHHHHHHHHh
Confidence 1 1 000000122333322 12 233322 2357899999999 8877663 33444555
Q ss_pred cCCcceEEEeeeccCCCcceEEEEeCCeeEEEEeccCChhhhhhccccccccEEEEEeEEEeHHHHHHHHHhcccccccc
Q 012172 239 NKNEYCMEVTPKTLADVKGGTLISYEGKVQLLEIAQVPDEHVNEFKSIEKFKIFNTNNLWVNLKAIKRLVEADALKMEII 318 (469)
Q Consensus 239 ~~~~~~~~v~~k~~~~~~~G~iv~~~g~~~ivEy~~~~~e~~~~~~~~~~~~~~Nt~~~~~~l~~L~~~l~~~~~~lp~~ 318 (469)
.+++..+.|++...++... .....+|++...-..... ...++....-..|.+.|+++.+.+.+- +
T Consensus 123 ~~~ds~~sv~~~~~~~~~~-~~~~~~g~~~~~~~~~~~----~~rQd~~~~y~~nga~y~~~~~~~~~~--~-------- 187 (222)
T TIGR03584 123 PNAHFVFSVTSFAFPIQRA-FKLKENGGVEMFFPEHFN----TRSQDLEEAYHDAGQFYWGKSQAWLES--G-------- 187 (222)
T ss_pred CCCCEEEEeeccCCChHHh-eEECCCCcEEecCCCccc----CCCCCCchheeeCCeEEEEEHHHHHhc--C--------
Confidence 6688888887754333211 122244555322211111 011222233345999999998877531 0
Q ss_pred cCCCcCCCcceehhHHHhhhHhhhcccceeEeecCccccccCCchhHHHHHHH
Q 012172 319 PNPKEVDGIKVLQLETAAGAAIRFFDHAIGCNVHRSRFLPVKATSDLLLVQSD 371 (469)
Q Consensus 319 ~n~K~~~g~~~iqle~~~~d~~~~~~~~~~v~v~r~eF~pVKn~~dL~~~~~~ 371 (469)
.+.+ .+...+++++.+-.=|.+..|+..||.-
T Consensus 188 ---------------~~~~------~~~~~~~m~~~~~iDID~~~D~~~ae~l 219 (222)
T TIGR03584 188 ---------------PIFS------PHSIPIVLPRHLVQDIDTLEDWERAELL 219 (222)
T ss_pred ---------------CccC------CCcEEEEeCccceeCCCCHHHHHHHHHH
Confidence 0011 3345566777766777788887777653
|
The sequences in this family include the pfam02348 (cytidyltransferase) domain and are homologous to the NeuA protein responsible for the transfer of CMP to neuraminic acid. According to, this gene is responsible for the transfer of CMP to the structurally related sugar, pseudaminic acid which is observed as a component of sugar modifications of flagellin in Campylobacter species. This gene is commonly observed in apparent operons with other genes responsible for the biosynthesis of pseudaminic acid and as a component of flagellar and exopolysaccharide biosynthesis loci. |
| >COG4750 LicC CTP:phosphocholine cytidylyltransferase involved in choline phosphorylation for cell surface LPS epitopes [Cell envelope biogenesis, outer membrane] | Back alignment and domain information |
|---|
Probab=97.68 E-value=5.4e-05 Score=70.52 Aligned_cols=61 Identities=18% Similarity=0.415 Sum_probs=47.9
Q ss_pred eEEEEcCCCCCcCC---CCCCccccccCCCCchHHHHHHHHHHhhhhcCCcccEEEecCCCChHHHHHHHHH
Q 012172 81 VVLKLNGGLGTTMG---CTGPKSVIEVRNGLTFLDLIVIQIENLNAKYGCNVPLLLMNSFNTHDDTSKIIEK 149 (469)
Q Consensus 81 avviLAGG~GTRmg---~~~PK~l~~v~~gks~L~~~~~~i~~l~~~~~~~iplviMtS~~t~e~t~~~~~~ 149 (469)
-+||||+|+|||+. .+.||+|+.| .|+|+++.+++++++.+-. +|. |.|+. -+|+. +||++
T Consensus 2 nAIIlAAG~gsR~~plT~~tpK~LlkV-~g~plIErqI~~L~e~gI~---dI~--IVvGY-lkE~F-eYLkd 65 (231)
T COG4750 2 NAIILAAGLGSRFVPLTQSTPKSLLKV-NGEPLIERQIEQLREAGID---DIT--IVVGY-LKEQF-EYLKD 65 (231)
T ss_pred ceEEEecccccccccccccCChHHHHh-cCcccHHHHHHHHHHCCCc---eEE--EEeee-hHHHH-HHHHH
Confidence 36899999999986 5889999999 9999999999999887633 344 44466 66665 56664
|
|
| >cd02518 GT2_SpsF SpsF is a glycosyltrnasferase implicated in the synthesis of the spore coat | Back alignment and domain information |
|---|
Probab=97.66 E-value=0.00048 Score=66.55 Aligned_cols=59 Identities=12% Similarity=0.128 Sum_probs=43.0
Q ss_pred EEEEcCCCCCcCCCCCCccccccCCCCchHHHHHHHHHHhhhhcCCcccEEEecCCCC-hHHHHHHHH
Q 012172 82 VLKLNGGLGTTMGCTGPKSVIEVRNGLTFLDLIVIQIENLNAKYGCNVPLLLMNSFNT-HDDTSKIIE 148 (469)
Q Consensus 82 vviLAGG~GTRmg~~~PK~l~~v~~gks~L~~~~~~i~~l~~~~~~~iplviMtS~~t-~e~t~~~~~ 148 (469)
+|+||||.++||+ +|.++++ .|+|++++.++.+..... --.+++-|+... ++.+.+++.
T Consensus 2 aiIlA~G~S~R~~---~K~ll~l-~Gkpli~~~i~~l~~~~~----~~~ivVv~~~~~~~~~i~~~~~ 61 (233)
T cd02518 2 AIIQARMGSTRLP---GKVLKPL-GGKPLLEHLLDRLKRSKL----IDEIVIATSTNEEDDPLEALAK 61 (233)
T ss_pred EEEeeCCCCCCCC---CCccccc-CCccHHHHHHHHHHhCCC----CCeEEEECCCCcccHHHHHHHH
Confidence 5899999999996 5999999 999999999999987531 013455445422 155666654
|
Spore coat polysaccharide biosynthesis protein F (spsF) is a glycosyltransferase implicated in the synthesis of the spore coat in a variety of bacteria challenged by stress as starvation. The spsF gene is expressed in the late stage of coat development responsible for a terminal step in coat formation that involves the glycosylation of the coat. SpsF gene mutation resulted in spores that appeared normal. But, the spores tended to aggregate and had abnormal adsorption properties, indicating a surface alteration. |
| >COG1211 IspD 4-diphosphocytidyl-2-methyl-D-erithritol synthase [Lipid metabolism] | Back alignment and domain information |
|---|
Probab=97.61 E-value=8.2e-05 Score=72.09 Aligned_cols=64 Identities=20% Similarity=0.290 Sum_probs=49.6
Q ss_pred cceeEEEEcCCCCCcCCCCCCccccccCCCCchHHHHHHHHHHhhhhcCCcc-cEEEecCCCChHHHHHHH
Q 012172 78 DKLVVLKLNGGLGTTMGCTGPKSVIEVRNGLTFLDLIVIQIENLNAKYGCNV-PLLLMNSFNTHDDTSKII 147 (469)
Q Consensus 78 ~k~avviLAGG~GTRmg~~~PK~l~~v~~gks~L~~~~~~i~~l~~~~~~~i-plviMtS~~t~e~t~~~~ 147 (469)
.++.+|+||||.|||||.+.||-.+++ .|+|+|+|.++.++.... + .++|.++...++.+.++.
T Consensus 3 ~~~~~vilAaG~G~R~~~~~pKq~l~l-~g~pll~~tl~~f~~~~~-----i~~Ivvv~~~~~~~~~~~~~ 67 (230)
T COG1211 3 MMVSAVILAAGFGSRMGNPVPKQYLEL-GGRPLLEHTLEAFLESPA-----IDEIVVVVSPEDDPYFEKLP 67 (230)
T ss_pred ceEEEEEEcCccccccCCCCCceEEEE-CCEEehHHHHHHHHhCcC-----CCeEEEEEChhhhHHHHHhh
Confidence 367899999999999999999999999 999999999999988752 3 344544443444444444
|
|
| >PRK00317 mobA molybdopterin-guanine dinucleotide biosynthesis protein MobA; Reviewed | Back alignment and domain information |
|---|
Probab=97.61 E-value=5.4e-05 Score=71.03 Aligned_cols=39 Identities=23% Similarity=0.404 Sum_probs=35.8
Q ss_pred ceeEEEEcCCCCCcCCCCCCccccccCCCCchHHHHHHHHH
Q 012172 79 KLVVLKLNGGLGTTMGCTGPKSVIEVRNGLTFLDLIVIQIE 119 (469)
Q Consensus 79 k~avviLAGG~GTRmg~~~PK~l~~v~~gks~L~~~~~~i~ 119 (469)
++.+||||||.|||||. .||.++++ .|+||+++.++.+.
T Consensus 3 ~~~~vILA~G~s~Rm~~-~~K~ll~~-~g~~ll~~~i~~l~ 41 (193)
T PRK00317 3 PITGVILAGGRSRRMGG-VDKGLQEL-NGKPLIQHVIERLA 41 (193)
T ss_pred CceEEEEcCCCcccCCC-CCCceeEE-CCEEHHHHHHHHHh
Confidence 67899999999999963 69999999 99999999999987
|
|
| >COG2068 Uncharacterized MobA-related protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=97.54 E-value=0.00043 Score=65.38 Aligned_cols=61 Identities=11% Similarity=0.257 Sum_probs=47.1
Q ss_pred cceeEEEEcCCCCCcCCCCCCccccccCCCCchHHHHHHHHHHhhhhcCCcccEEEecCCCChHHHHHH
Q 012172 78 DKLVVLKLNGGLGTTMGCTGPKSVIEVRNGLTFLDLIVIQIENLNAKYGCNVPLLLMNSFNTHDDTSKI 146 (469)
Q Consensus 78 ~k~avviLAGG~GTRmg~~~PK~l~~v~~gks~L~~~~~~i~~l~~~~~~~iplviMtS~~t~e~t~~~ 146 (469)
.+++.|+||+|.||||| .+|-|.|+ .|+|++.+.++++.+-.-. .+++.|++...+...+.
T Consensus 4 ~~v~~VvLAAGrssRmG--~~KlLap~-~g~plv~~~~~~a~~a~~~-----~vivV~g~~~~~~~~a~ 64 (199)
T COG2068 4 STVAAVVLAAGRSSRMG--QPKLLAPL-DGKPLVRASAETALSAGLD-----RVIVVTGHRVAEAVEAL 64 (199)
T ss_pred cceEEEEEcccccccCC--Ccceeccc-CCCcHHHHHHHHHHhcCCC-----eEEEEeCcchhhHHHhh
Confidence 36899999999999999 89999999 9999999999999874322 44555677533333333
|
|
| >PRK14500 putative bifunctional molybdopterin-guanine dinucleotide biosynthesis protein MoaC/MobA; Provisional | Back alignment and domain information |
|---|
Probab=97.30 E-value=0.00021 Score=73.61 Aligned_cols=40 Identities=23% Similarity=0.335 Sum_probs=36.5
Q ss_pred ceeEEEEcCCCCCcCCCCCCccccccCCCCchHHHHHHHHHHh
Q 012172 79 KLVVLKLNGGLGTTMGCTGPKSVIEVRNGLTFLDLIVIQIENL 121 (469)
Q Consensus 79 k~avviLAGG~GTRmg~~~PK~l~~v~~gks~L~~~~~~i~~l 121 (469)
.+..|+||||+|+||| .+|.++++ .|+||++++++.+...
T Consensus 160 ~i~~IILAGGkSsRMG--~dKaLL~~-~GkpLl~~~ie~l~~~ 199 (346)
T PRK14500 160 PLYGLVLTGGKSRRMG--KDKALLNY-QGQPHAQYLYDLLAKY 199 (346)
T ss_pred CceEEEEeccccccCC--CCccccee-CCccHHHHHHHHHHhh
Confidence 6789999999999998 59999999 8999999999888765
|
|
| >KOG1461 consensus Translation initiation factor 2B, epsilon subunit (eIF-2Bepsilon/GCD6) [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=96.53 E-value=0.39 Score=52.43 Aligned_cols=65 Identities=15% Similarity=0.281 Sum_probs=51.8
Q ss_pred cceeEEEEcCCCCCcCC---CCCCccccccCCCCchHHHHHHHHHHhhhhcCCcccEEEecCCCChHHHHHHHHH
Q 012172 78 DKLVVLKLNGGLGTTMG---CTGPKSVIEVRNGLTFLDLIVIQIENLNAKYGCNVPLLLMNSFNTHDDTSKIIEK 149 (469)
Q Consensus 78 ~k~avviLAGG~GTRmg---~~~PK~l~~v~~gks~L~~~~~~i~~l~~~~~~~iplviMtS~~t~e~t~~~~~~ 149 (469)
..+-+|+||----||.. ..+|+.|+|+ .+-||+++.++.+.+.+-. -+++.+|. ...++.+|+++
T Consensus 23 ~rLqAIllaDsf~trF~Plt~~~p~~LLPl-aNVpmIdYtL~~L~~agV~-----eVfvfc~~-~~~qi~e~i~~ 90 (673)
T KOG1461|consen 23 HRLQAILLADSFETRFRPLTLEKPRVLLPL-ANVPMIDYTLEWLERAGVE-----EVFVFCSA-HAAQIIEYIEK 90 (673)
T ss_pred cceEEEEEeccchhcccccccCCCceEeee-cCchHHHHHHHHHHhcCce-----EEEEEecc-cHHHHHHHHhh
Confidence 36788999999999976 4889999999 9999999999998876522 23444454 57889999987
|
|
| >COG1207 GlmU N-acetylglucosamine-1-phosphate uridyltransferase (contains nucleotidyltransferase and I-patch acetyltransferase domains) [Cell envelope biogenesis, outer membrane] | Back alignment and domain information |
|---|
Probab=96.16 E-value=0.0057 Score=63.65 Aligned_cols=54 Identities=20% Similarity=0.419 Sum_probs=43.1
Q ss_pred ccccCceEEEeeEEECCCcEEeeeEEEEe--cCCCceeeCCCCeeecceecCCCCC
Q 012172 416 IIELDSLKVTGDVWFGANITLKGKVTIAA--KSGEKLEIPDGAVLENKEINGPGDL 469 (469)
Q Consensus 416 ~~~~~~l~v~G~v~fg~~V~i~g~~~I~~--~~~~~~~I~~~s~le~~~v~~~~~~ 469 (469)
|..-.++.|+++|.||++|.|..+|+|++ ..|+.+.|.++|+|+++.|+.|..|
T Consensus 257 l~dP~t~~i~~dv~ig~DvvI~p~v~l~G~t~ig~~v~iGpg~~i~ds~I~~~a~I 312 (460)
T COG1207 257 LIDPATTYIRGDVEIGRDVVIEPNVILEGNTVIGDNVVIGPGSVIKDSVIGDNAVI 312 (460)
T ss_pred EeCCCeEEEcCcEEECCceEEecCcEEeeeEEECCceEECCCcEEEeeEEcCCCEE
Confidence 33446777888888888888888888883 3788899999999999999987643
|
|
| >cd03353 LbH_GlmU_C N-acetyl-glucosamine-1-phosphate uridyltransferase (GlmU), C-terminal left-handed beta-helix (LbH) acetyltransferase domain: GlmU is also known as UDP-N-acetylglucosamine pyrophosphorylase | Back alignment and domain information |
|---|
Probab=95.95 E-value=0.012 Score=55.30 Aligned_cols=47 Identities=17% Similarity=0.290 Sum_probs=26.4
Q ss_pred CceEEEeeEEECCCcEEeeeEEEEe-cCCCceeeCCCCeeecceecCC
Q 012172 420 DSLKVTGDVWFGANITLKGKVTIAA-KSGEKLEIPDGAVLENKEINGP 466 (469)
Q Consensus 420 ~~l~v~G~v~fg~~V~i~g~~~I~~-~~~~~~~I~~~s~le~~~v~~~ 466 (469)
.++.|.+++++|+|+.|..+|.|.+ ..++.+.|.+++.|++++|+.+
T Consensus 26 ~~a~i~~~~~Ig~~~~I~~~~~I~~~~Ig~~~~I~~~~~i~~~~ig~~ 73 (193)
T cd03353 26 PGVILEGKTVIGEDCVIGPNCVIKDSTIGDGVVIKASSVIEGAVIGNG 73 (193)
T ss_pred CCCEEeCcCEECCCCEECCCcEEeCCEECCCCEEcCCeEEEeeEECCC
Confidence 3455566666666666666666663 3444455555555555555443
|
It is a bifunctional bacterial enzyme that catalyzes two consecutive steps in the formation of UDP-N-acetylglucosamine (UDP-GlcNAc), an important precursor in bacterial cell wall formation. The two enzymatic activities, uridyltransferase and acetyltransferase, are carried out by two independent domains. The C-terminal LbH domain possesses the acetyltransferase activity. It catalyzes the CoA-dependent acetylation of GlcN-1-phosphate to GlcNAc-1-phosphate. The LbH domain contains 10 turns, each containing three imperfect tandem repeats of a hexapeptide repeat motif (X-[STAV]-X-[LIV]-[GAED]-X. The acetyltransferase active site is located at the interface between two subunits of the active LbH trimer. |
| >COG1212 KdsB CMP-2-keto-3-deoxyoctulosonic acid synthetase [Cell envelope biogenesis, outer membrane] | Back alignment and domain information |
|---|
Probab=95.82 E-value=0.67 Score=44.84 Aligned_cols=234 Identities=13% Similarity=0.073 Sum_probs=127.1
Q ss_pred ceeEEEEcCCCCCcCCCCCCccccccCCCCchHHHHHHHHHHhhhhcCCcccEEEecCCCChHHHHHHHHHhcCCCCceE
Q 012172 79 KLVVLKLNGGLGTTMGCTGPKSVIEVRNGLTFLDLIVIQIENLNAKYGCNVPLLLMNSFNTHDDTSKIIEKYSKSNVEIH 158 (469)
Q Consensus 79 k~avviLAGG~GTRmg~~~PK~l~~v~~gks~L~~~~~~i~~l~~~~~~~iplviMtS~~t~e~t~~~~~~~~g~~~~i~ 158 (469)
+..+||-|==..|||- =|+|-.+ .|+||++++.+++.+-+.. .+++-| .++.+.+..+++.+ .+.
T Consensus 3 ~~~viIPAR~~STRLp---gKPLadI-~GkpmI~rV~e~a~~s~~~-----rvvVAT---Dde~I~~av~~~G~---~av 67 (247)
T COG1212 3 KFVVIIPARLASTRLP---GKPLADI-GGKPMIVRVAERALKSGAD-----RVVVAT---DDERIAEAVQAFGG---EAV 67 (247)
T ss_pred ceEEEEecchhcccCC---CCchhhh-CCchHHHHHHHHHHHcCCC-----eEEEEc---CCHHHHHHHHHhCC---EEE
Confidence 5667777755555553 4778888 9999999999999876422 445544 57888888877522 111
Q ss_pred EEEecCcceecCCCCcccCCCCCCCCcccccCCCcccchhccccchHHHHHHcCCcEEEEEeCcc-cccccc-HHHHHHH
Q 012172 159 TFNQSQYPRLCADDFVPLPCKGKTDKDGWYPPGHGDVFPSLMNSGKLDALISQGKEYVFAANSDN-LGAIVD-LKILNHL 236 (469)
Q Consensus 159 ~f~Q~~~P~l~~~~~~~~~~~~~~~~~~~~P~GhGd~~~~L~~sg~L~~l~~~G~~~v~v~n~DN-L~~~~d-p~~Lg~~ 236 (469)
+.+ ...|.|+==++.++..-+. ...+++.=.|+|- ++.... ..++..+
T Consensus 68 -----------------mT~-------~~h~SGTdR~~Ev~~~l~~------~~~~iIVNvQGDeP~i~p~~I~~~~~~L 117 (247)
T COG1212 68 -----------------MTS-------KDHQSGTDRLAEVVEKLGL------PDDEIIVNVQGDEPFIEPEVIRAVAENL 117 (247)
T ss_pred -----------------ecC-------CCCCCccHHHHHHHHhcCC------CcceEEEEccCCCCCCCHHHHHHHHHHH
Confidence 111 1124555444333322111 1224666678888 766533 2344455
Q ss_pred HHcCCcceEEEeeeccCC-----CcceEEEEeCCeeEEEEeccCChhhhhhccccccccEEEEEeEEEeHHHHHHHHHhc
Q 012172 237 IQNKNEYCMEVTPKTLAD-----VKGGTLISYEGKVQLLEIAQVPDEHVNEFKSIEKFKIFNTNNLWVNLKAIKRLVEAD 311 (469)
Q Consensus 237 ~~~~~~~~~~v~~k~~~~-----~~~G~iv~~~g~~~ivEy~~~~~e~~~~~~~~~~~~~~Nt~~~~~~l~~L~~~l~~~ 311 (469)
...+++++.-+++.++.. ..+-+++..+|+.---=-+-+|-.-.+ .+ ...-+-.+|+|.++..+|++.+.-.
T Consensus 118 ~~~~~~~aTl~~~i~~~ee~~nPN~VKvV~d~~g~ALYFSRs~iP~~rd~--~~-~~p~l~HIGIYayr~~~L~~f~~~~ 194 (247)
T COG1212 118 ENSNADMATLAVKITDEEEAFNPNVVKVVLDKEGYALYFSRAPIPYGRDN--FG-GTPFLRHIGIYAYRAGFLERFVALK 194 (247)
T ss_pred HhCCcceeeeeeecCCHHHhcCCCcEEEEEcCCCcEEEEEcCCCCCcccc--cC-CcchhheeehHHhHHHHHHHHHhcC
Confidence 555677766666555433 333344333333211111123322100 00 0122349999999999999987531
Q ss_pred ccccccccCCCcCCCcceehhHHHhhhHhhhcccceeEeecCccccccCCchhHHHHHHHHH
Q 012172 312 ALKMEIIPNPKEVDGIKVLQLETAAGAAIRFFDHAIGCNVHRSRFLPVKATSDLLLVQSDLY 373 (469)
Q Consensus 312 ~~~lp~~~n~K~~~g~~~iqle~~~~d~~~~~~~~~~v~v~r~eF~pVKn~~dL~~~~~~~~ 373 (469)
. .+=|..=+||+.- ++....++.+..+...-=.+|-+.+||..+++.+.
T Consensus 195 p-----------s~LE~~E~LEQLR--~Le~G~kI~v~i~~~~p~~gVDT~EDLe~v~~~~~ 243 (247)
T COG1212 195 P-----------SPLEKIESLEQLR--VLENGEKIHVEIVKEVPSIGVDTPEDLERVRKILS 243 (247)
T ss_pred C-----------chhHHHHHHHHHH--HHHcCCeeEEEEeccCCCCCCCCHHHHHHHHHHHH
Confidence 0 0012233444432 24443444443333334489999999999998775
|
|
| >cd05636 LbH_G1P_TT_C_like Putative glucose-1-phosphate thymidylyltransferase, C-terminal Left-handed parallel beta-Helix (LbH) domain: Proteins in this family show simlarity to glucose-1-phosphate adenylyltransferases in that they contain N-terminal catalytic domains that resemble a dinucleotide-binding Rossmann fold and C-terminal LbH fold domains | Back alignment and domain information |
|---|
Probab=95.12 E-value=0.033 Score=50.88 Aligned_cols=45 Identities=9% Similarity=0.149 Sum_probs=20.4
Q ss_pred eEEEeeEEECCCcEEeeeEEEEec-CCCceeeCCCCeeecceecCC
Q 012172 422 LKVTGDVWFGANITLKGKVTIAAK-SGEKLEIPDGAVLENKEINGP 466 (469)
Q Consensus 422 l~v~G~v~fg~~V~i~g~~~I~~~-~~~~~~I~~~s~le~~~v~~~ 466 (469)
+.|.+++.+|+++.|+.++.|.++ .++.+.|.+++++++++|+.+
T Consensus 48 ~~i~~~~~Ig~~~~I~~~~~i~~siig~~~~I~~~~~i~~siIg~~ 93 (163)
T cd05636 48 AYIRGYTVLGDGCVVGNSVEVKNSIIMDGTKVPHLNYVGDSVLGEN 93 (163)
T ss_pred CEEcCCCEECCCCEECCCcEEeeeEecCCCEeccCCEEecCEECCC
Confidence 334444444444444444444422 333444555555555555444
|
Members in this family are predicted to be glucose-1-phosphate thymidylyltransferases, which are involved in the dTDP-L-rhamnose biosynthetic pathway. Glucose-1-phosphate thymidylyltransferase catalyzes the synthesis of deoxy-thymidine di-phosphate (dTDP)-L-rhamnose, an important component of the cell wall of many microorganisms. The C-terminal LbH domain contains multiple turns, each containing three imperfect tandem repeats of a hexapeptide repeat motif (X-[STAV]-X-[LIV]-[GAED]-X). Proteins containing hexapeptide repeats are often enzymes showing acyltransferase activity. |
| >cd05824 LbH_M1P_guanylylT_C Mannose-1-phosphate guanylyltransferase, C-terminal Left-handed parallel beta helix (LbH) domain: Mannose-1-phosphate guanylyltransferase is also known as GDP-mannose pyrophosphorylase | Back alignment and domain information |
|---|
Probab=94.75 E-value=0.035 Score=44.42 Aligned_cols=46 Identities=15% Similarity=0.174 Sum_probs=26.5
Q ss_pred ceEEEeeEEECCCcEEeeeEEEEec-CCCceeeCCCCeeecceecCC
Q 012172 421 SLKVTGDVWFGANITLKGKVTIAAK-SGEKLEIPDGAVLENKEINGP 466 (469)
Q Consensus 421 ~l~v~G~v~fg~~V~i~g~~~I~~~-~~~~~~I~~~s~le~~~v~~~ 466 (469)
+.+|.+++++|++++|+.+|.|.++ .++.+.|.+++.|.+++++.+
T Consensus 11 ~~~i~~~~~Ig~~~~Ig~~~~i~~sii~~~~~i~~~~~i~~sii~~~ 57 (80)
T cd05824 11 TAKIGPNVVIGPNVTIGDGVRLQRCVILSNSTVRDHSWVKSSIVGWN 57 (80)
T ss_pred CCEECCCCEECCCCEECCCcEEeeeEEcCCCEECCCCEEeCCEEeCC
Confidence 3445555556666666555555533 245566777777766666544
|
It catalyzes the synthesis of GDP-mannose from GTP and mannose-1-phosphate, and is involved in the maintenance of cell wall integrity and glycosylation. Similar to ADP-glucose pyrophosphorylase, it contains an N-terminal catalytic domain that resembles a dinucleotide-binding Rossmann fold and a C-terminal LbH fold domain, presumably with 4 turns, each containing three imperfect tandem repeats of a hexapeptide repeat motif (X-[STAV]-X-[LIV]-[GAED]-X). Proteins containing hexapeptide repeats are often enzymes showing acyltransferase activity. |
| >cd04650 LbH_FBP Ferripyochelin Binding Protein (FBP): FBP is an outer membrane protein which plays a role in iron acquisition | Back alignment and domain information |
|---|
Probab=94.19 E-value=0.1 Score=47.44 Aligned_cols=49 Identities=18% Similarity=0.323 Sum_probs=32.9
Q ss_pred CceEEEee---EEECCCcEEeeeEEEEec------CCCceeeCCCCeeecceecCCCC
Q 012172 420 DSLKVTGD---VWFGANITLKGKVTIAAK------SGEKLEIPDGAVLENKEINGPGD 468 (469)
Q Consensus 420 ~~l~v~G~---v~fg~~V~i~g~~~I~~~------~~~~~~I~~~s~le~~~v~~~~~ 468 (469)
.+.+|.|+ +++|+++.|+.+|.|.+. .++.+.|.+++.+++++|+.+.+
T Consensus 29 ~~a~I~~~~~~i~Ig~~~~Ig~~~~I~~~~~~~~~Ig~~~~I~~~~~i~~~~Ig~~~~ 86 (154)
T cd04650 29 HYAVIRGDNDSIYIGKYSNVQENVSIHTDHGYPTEIGDYVTIGHNAVVHGAKVGNYVI 86 (154)
T ss_pred CCeEEEcCCCcEEECCCCEECCCCEEEeCCCCCeEECCCCEECCCcEEECcEECCCCE
Confidence 56667665 778888888888877753 45556666666667666665543
|
It binds iron when it is complexed with pyochelin. It adopts the left-handed parallel beta-helix (LbH) structure, and contains imperfect tandem repeats of a hexapeptide repeat motif (X-[STAV]-X-[LIV]-[GAED]-X). Proteins containing hexapeptide repeats are often enzymes showing acyltransferase activity. Acyltransferase activity has not been observed in this group. |
| >cd03356 LbH_G1P_AT_C_like Left-handed parallel beta-Helix (LbH) domain of a group of proteins with similarity to glucose-1-phosphate adenylyltransferase: Included in this family are glucose-1-phosphate adenylyltransferase, mannose-1-phosphate guanylyltransferase, and the eukaryotic translation initiation factor eIF-2B subunits, epsilon and gamma | Back alignment and domain information |
|---|
Probab=93.89 E-value=0.069 Score=42.28 Aligned_cols=15 Identities=20% Similarity=0.304 Sum_probs=6.4
Q ss_pred eeeCCCCeeecceec
Q 012172 450 LEIPDGAVLENKEIN 464 (469)
Q Consensus 450 ~~I~~~s~le~~~v~ 464 (469)
+.|.++++|++++|+
T Consensus 40 ~~i~~~~~i~~svv~ 54 (79)
T cd03356 40 VTIGANSVIVDSIIG 54 (79)
T ss_pred CEECCCCEEECCEEC
Confidence 334444444444443
|
Most members of this family contains an N-terminal catalytic domain that resembles a dinucleotide-binding Rossmann fold, followed by a LbH fold domain with at least 4 turns, each containing three imperfect tandem repeats of a hexapeptide repeat motif (X-[STAV]-X-[LIV]-[GAED]-X). eIF-2B epsilon contains an additional domain of unknown function at the C-terminus. Proteins containing hexapeptide repeats are often enzymes showing acyltransferase activity. |
| >PLN02472 uncharacterized protein | Back alignment and domain information |
|---|
Probab=93.84 E-value=0.088 Score=51.85 Aligned_cols=16 Identities=6% Similarity=0.086 Sum_probs=7.2
Q ss_pred EEECCCcEEeeeEEEE
Q 012172 428 VWFGANITLKGKVTIA 443 (469)
Q Consensus 428 v~fg~~V~i~g~~~I~ 443 (469)
+++|++|+|+.+|+|.
T Consensus 127 tvIG~~v~IG~~s~L~ 142 (246)
T PLN02472 127 TLIDRYVTIGAYSLLR 142 (246)
T ss_pred cEECCCCEECCCcEEC
Confidence 4444444444444444
|
|
| >cd05636 LbH_G1P_TT_C_like Putative glucose-1-phosphate thymidylyltransferase, C-terminal Left-handed parallel beta-Helix (LbH) domain: Proteins in this family show simlarity to glucose-1-phosphate adenylyltransferases in that they contain N-terminal catalytic domains that resemble a dinucleotide-binding Rossmann fold and C-terminal LbH fold domains | Back alignment and domain information |
|---|
Probab=93.40 E-value=0.12 Score=47.13 Aligned_cols=49 Identities=14% Similarity=0.171 Sum_probs=37.6
Q ss_pred CceEEEeeEEECCCcEEeeeEEEE--ecCCCceeeCCCCeeecceecCCCC
Q 012172 420 DSLKVTGDVWFGANITLKGKVTIA--AKSGEKLEIPDGAVLENKEINGPGD 468 (469)
Q Consensus 420 ~~l~v~G~v~fg~~V~i~g~~~I~--~~~~~~~~I~~~s~le~~~v~~~~~ 468 (469)
.+.+++|++++|++++|+.++.|. +..++.+.|.++++|++++|+.+.+
T Consensus 28 ~~a~i~~~v~Ig~~~~I~~~~~i~~~~~Ig~~~~I~~~~~i~~siig~~~~ 78 (163)
T cd05636 28 SGAYIEGPVIIGKGCEIGPNAYIRGYTVLGDGCVVGNSVEVKNSIIMDGTK 78 (163)
T ss_pred CCCEEeCCeEECCCCEECCCCEEcCCCEECCCCEECCCcEEeeeEecCCCE
Confidence 456778888888888888888776 3467778888888888888876654
|
Members in this family are predicted to be glucose-1-phosphate thymidylyltransferases, which are involved in the dTDP-L-rhamnose biosynthetic pathway. Glucose-1-phosphate thymidylyltransferase catalyzes the synthesis of deoxy-thymidine di-phosphate (dTDP)-L-rhamnose, an important component of the cell wall of many microorganisms. The C-terminal LbH domain contains multiple turns, each containing three imperfect tandem repeats of a hexapeptide repeat motif (X-[STAV]-X-[LIV]-[GAED]-X). Proteins containing hexapeptide repeats are often enzymes showing acyltransferase activity. |
| >TIGR02287 PaaY phenylacetic acid degradation protein PaaY | Back alignment and domain information |
|---|
Probab=93.31 E-value=0.14 Score=48.48 Aligned_cols=48 Identities=10% Similarity=0.166 Sum_probs=27.3
Q ss_pred CceEEEe---eEEECCCcEEeeeEEEEec------CCCceeeCCCCeeecceecCCC
Q 012172 420 DSLKVTG---DVWFGANITLKGKVTIAAK------SGEKLEIPDGAVLENKEINGPG 467 (469)
Q Consensus 420 ~~l~v~G---~v~fg~~V~i~g~~~I~~~------~~~~~~I~~~s~le~~~v~~~~ 467 (469)
..++|.| .+++|+++.|+.+|+|.+. .++.+.|.++++|++++|+.+.
T Consensus 37 ~~a~I~gd~g~i~Ig~~t~Ig~~~~I~~~~~~~siIg~~~~Ig~~a~I~~siIg~~~ 93 (192)
T TIGR02287 37 PLASLRGDFGRIVLKEGANIQDNCVMHGFPGQDTVVEENGHVGHGAILHGCIVGRNA 93 (192)
T ss_pred CCcEEEccCCceEECCCCEECCCeEEeccCCCCCeECCCCEECCCCEEcCCEECCCC
Confidence 3455554 3666777777777777432 3334455555666666665543
|
Members of this family are located next to other genes organized into apparent operons for phenylacetic acid degradation. PaaY is located near the end of these gene clusters and often next to PaaX, a transcriptional regulator. |
| >cd03359 LbH_Dynactin_5 Dynactin 5 (or subunit p25); Dynactin is a major component of the activator complex that stimulates dynein-mediated vesicle transport | Back alignment and domain information |
|---|
Probab=93.20 E-value=0.16 Score=46.48 Aligned_cols=15 Identities=20% Similarity=0.140 Sum_probs=7.1
Q ss_pred EECCCcEEeeeEEEE
Q 012172 429 WFGANITLKGKVTIA 443 (469)
Q Consensus 429 ~fg~~V~i~g~~~I~ 443 (469)
+||+++.|+.+|+|.
T Consensus 44 ~IG~~~~I~~~~~I~ 58 (161)
T cd03359 44 SIGRYCILSEGCVIR 58 (161)
T ss_pred EECCCcEECCCCEEe
Confidence 444444444444444
|
Dynactin is a heterocomplex of at least eight subunits, including a 150,000-MW protein called Glued, the actin-capping protein Arp1, and dynamatin. In vitro binding experiments show that dynactin enhances dynein-dependent motility, possibly through interaction with microtubules and vesicles. Subunit p25 is part of the pointed-end subcomplex in dynactin that also includes p26, p27, and Arp11. This subcomplex interacts with membranous cargoes. p25 and p27 contain imperfect tandem repeats of a hexapeptide repeat motif (X-[STAV]-X-[LIV]-[GAED]-X), indicating a left-handed parallel beta helix (LbH) structural domain. Proteins containing hexapeptide repeats are often enzymes showing acyltransferase activity. |
| >cd04645 LbH_gamma_CA_like Gamma carbonic anhydrase-like: This family is composed of gamma carbonic anhydrase (CA), Ferripyochelin Binding Protein (FBP), E | Back alignment and domain information |
|---|
Probab=93.13 E-value=0.17 Score=45.60 Aligned_cols=47 Identities=19% Similarity=0.337 Sum_probs=25.8
Q ss_pred CceEEEee---EEECCCcEEeeeEEEEe------cCCCceeeCCCCeeecceecCC
Q 012172 420 DSLKVTGD---VWFGANITLKGKVTIAA------KSGEKLEIPDGAVLENKEINGP 466 (469)
Q Consensus 420 ~~l~v~G~---v~fg~~V~i~g~~~I~~------~~~~~~~I~~~s~le~~~v~~~ 466 (469)
+..+|.|+ ++||+++.|+.+|+|.+ ..++.+.|.+++.+++++|+.+
T Consensus 28 ~~~~I~~~~~~~~IG~~~~I~~~~~I~~~~~~~~~Ig~~~~I~~~~~i~~~~Ig~~ 83 (153)
T cd04645 28 FGAVLRGDVNPIRIGERTNIQDGSVLHVDPGYPTIIGDNVTVGHGAVLHGCTIGDN 83 (153)
T ss_pred CCeEEECCCCceEECCCCEECCCcEEecCCCCCeEEcCCcEECCCcEEeeeEECCC
Confidence 34445543 46666666666666664 2344455555555555555544
|
coli paaY protein, and similar proteins. CAs are zinc-containing enzymes that catalyze the reversible hydration of carbon dioxide in a two-step mechanism, involving the nucleophilic attack of a zinc-bound hydroxide ion on carbon dioxide, followed by the regeneration of the active site by ionization of the zinc-bound water molecule and removal of a proton from the active site. They are ubiquitous enzymes involved in fundamental processes like photosynthesis, respiration, pH homeostasis and ion transport. There are three evolutionary distinct groups - alpha, beta and gamma carbonic anhydrases - which show no significant sequence identity or structural similarity. Gamma CAs are trimeric enzymes with left-handed parallel beta helix (LbH) structural domain. |
| >PRK13627 carnitine operon protein CaiE; Provisional | Back alignment and domain information |
|---|
Probab=92.99 E-value=0.12 Score=49.18 Aligned_cols=49 Identities=22% Similarity=0.239 Sum_probs=26.6
Q ss_pred CceEEEee---EEECCCcEEeeeEEEEec------CCCceeeCCCCeeecceecCCCC
Q 012172 420 DSLKVTGD---VWFGANITLKGKVTIAAK------SGEKLEIPDGAVLENKEINGPGD 468 (469)
Q Consensus 420 ~~l~v~G~---v~fg~~V~i~g~~~I~~~------~~~~~~I~~~s~le~~~v~~~~~ 468 (469)
.+++|.|+ +.+|+++.|+.+|+|... .++.+.|.++++|++++|+.+..
T Consensus 39 ~~avIrgd~~~i~Ig~~~~Ig~~~~I~~~~~~~siIg~~~~Ig~~a~i~g~vIG~~v~ 96 (196)
T PRK13627 39 PLASLRGDYGRLIVQAGANLQDGCIMHGYCDTDTIVGENGHIGHGAILHGCVIGRDAL 96 (196)
T ss_pred CCCEEecCCccEEECCCCEECCCCEEeCCCCCCCEECCCCEECCCcEEeeEEECCCCE
Confidence 34445443 355555555555555422 34455566666666766665543
|
|
| >TIGR02287 PaaY phenylacetic acid degradation protein PaaY | Back alignment and domain information |
|---|
Probab=92.91 E-value=0.14 Score=48.43 Aligned_cols=39 Identities=21% Similarity=0.291 Sum_probs=29.8
Q ss_pred CceEEEeeEEECCCcEEeeeEEEEec-----CCCceeeCCCCee
Q 012172 420 DSLKVTGDVWFGANITLKGKVTIAAK-----SGEKLEIPDGAVL 458 (469)
Q Consensus 420 ~~l~v~G~v~fg~~V~i~g~~~I~~~-----~~~~~~I~~~s~l 458 (469)
.+.+|.|+|++|+++.|..+|+|++. .|+.+.|.++++|
T Consensus 19 ~~a~I~G~V~IG~~~~I~~~a~I~gd~g~i~Ig~~t~Ig~~~~I 62 (192)
T TIGR02287 19 PTAVLIGDVILGKRCYVGPLASLRGDFGRIVLKEGANIQDNCVM 62 (192)
T ss_pred CCCEEEeeEEECCCCEECCCcEEEccCCceEECCCCEECCCeEE
Confidence 56778899999999999999999854 3445566666666
|
Members of this family are located next to other genes organized into apparent operons for phenylacetic acid degradation. PaaY is located near the end of these gene clusters and often next to PaaX, a transcriptional regulator. |
| >cd04652 LbH_eIF2B_gamma_C eIF-2B gamma subunit, C-terminal Left-handed parallel beta-Helix (LbH) domain: eIF-2B is a eukaryotic translation initiator, a guanine nucleotide exchange factor (GEF) composed of five different subunits (alpha, beta, gamma, delta and epsilon) | Back alignment and domain information |
|---|
Probab=92.67 E-value=0.14 Score=41.01 Aligned_cols=48 Identities=17% Similarity=0.194 Sum_probs=33.6
Q ss_pred ceEEEeeEEECCCcEEeeeEEEEec-CCCceeeCCCCeeecceecCCCCC
Q 012172 421 SLKVTGDVWFGANITLKGKVTIAAK-SGEKLEIPDGAVLENKEINGPGDL 469 (469)
Q Consensus 421 ~l~v~G~v~fg~~V~i~g~~~I~~~-~~~~~~I~~~s~le~~~v~~~~~~ 469 (469)
...|+ +..+++++.|+.++.|.++ .++.+.|.+++++.+++|+.+.+|
T Consensus 28 ~~~i~-~s~i~~~~~ig~~~~l~~svi~~~~~i~~~~~v~~~ii~~~~~i 76 (81)
T cd04652 28 RVKIT-NCVIMDNVTIEDGCTLENCIIGNGAVIGEKCKLKDCLVGSGYRV 76 (81)
T ss_pred CCEEe-CcEEeCCCEECCCCEEeccEEeCCCEECCCCEEccCEECCCcEe
Confidence 34444 3556677777777777633 456688999999999999877653
|
eIF2B is important for regenerating GTP-bound eIF2 during the initiation process. This event is obligatory for eIF2 to bind initiator methionyl-tRNA, forming the ternary initiation complex. The eIF-2B gamma subunit contains an N-terminal domain that resembles a dinucleotide-binding Rossmann fold and a C-terminal LbH domain with 4 turns, each containing three imperfect tandem repeats of a hexapeptide repeat motif (X-[STAV]-X-[LIV]-[GAED]-X). The epsilon and gamma subunits form the catalytic subcomplex of eIF-2B, which binds eIF2 and catalyzes guanine nucleotide exchange. |
| >cd04745 LbH_paaY_like paaY-like: This group is composed by uncharacterized proteins with similarity to the protein product of the E | Back alignment and domain information |
|---|
Probab=92.65 E-value=0.16 Score=46.12 Aligned_cols=48 Identities=17% Similarity=0.208 Sum_probs=31.5
Q ss_pred CceEEEe---eEEECCCcEEeeeEEEEe------cCCCceeeCCCCeeecceecCCC
Q 012172 420 DSLKVTG---DVWFGANITLKGKVTIAA------KSGEKLEIPDGAVLENKEINGPG 467 (469)
Q Consensus 420 ~~l~v~G---~v~fg~~V~i~g~~~I~~------~~~~~~~I~~~s~le~~~v~~~~ 467 (469)
..++|.+ .+.+|+++.|+.+|+|.. ..++.+.|.++++|++++|+.+.
T Consensus 29 ~~~~i~~~~~~i~IG~~~~Ig~~~~I~~~~~~~~~Ig~~~~Ig~~~~i~~~~Ig~~~ 85 (155)
T cd04745 29 PHASLRGDFGRIVIRDGANVQDNCVIHGFPGQDTVLEENGHIGHGAILHGCTIGRNA 85 (155)
T ss_pred CCcEEeCCCCcEEECCCCEECCCCEEeecCCCCeEEcCCCEECCCcEEECCEECCCC
Confidence 4556655 477888888888888743 34455666666666777776554
|
coli paaY gene, which is part of the paa gene cluster responsible for phenylacetic acid degradation. Proteins in this group are expected to adopt the left-handed parallel beta-helix (LbH) structure. They contain imperfect tandem repeats of a hexapeptide repeat motif (X-[STAV]-X-[LIV]-[GAED]-X). Similarity to gamma carbonic anhydrase and Ferripyochelin Binding Protein (FBP) may suggest metal binding capacity. |
| >PLN02296 carbonate dehydratase | Back alignment and domain information |
|---|
Probab=92.36 E-value=0.19 Score=50.22 Aligned_cols=19 Identities=26% Similarity=0.471 Sum_probs=8.4
Q ss_pred CCceeeCCCCeeecceecC
Q 012172 447 GEKLEIPDGAVLENKEING 465 (469)
Q Consensus 447 ~~~~~I~~~s~le~~~v~~ 465 (469)
|+.+.|.++|+|.+++|+.
T Consensus 123 G~~v~IG~~avI~g~~Igd 141 (269)
T PLN02296 123 GDNVTIGHSAVLHGCTVED 141 (269)
T ss_pred CCCCEECCCceecCCEECC
Confidence 3334444444444444443
|
|
| >TIGR01853 lipid_A_lpxD UDP-3-O-[3-hydroxymyristoyl] glucosamine N-acyltransferase | Back alignment and domain information |
|---|
Probab=92.31 E-value=0.16 Score=52.11 Aligned_cols=35 Identities=29% Similarity=0.448 Sum_probs=14.9
Q ss_pred EEeeEEECCCcEEeeeEEEE--ecCCCceeeCCCCee
Q 012172 424 VTGDVWFGANITLKGKVTIA--AKSGEKLEIPDGAVL 458 (469)
Q Consensus 424 v~G~v~fg~~V~i~g~~~I~--~~~~~~~~I~~~s~l 458 (469)
|.+++++|+++.|..+|+|. +..|+.+.|.++++|
T Consensus 136 Ig~~~~IG~~~~I~~~~~I~~~~~IG~~~~I~~~~vI 172 (324)
T TIGR01853 136 IGDDVVIGDGSRIHPNVVIYERVQLGKNVIIHSGAVI 172 (324)
T ss_pred ECCcceeCCCceECCCcEECCCCEECCCCEECCCcEE
Confidence 33344444444444444443 233444444444444
|
This model describes LpxD, an enzyme for the biosynthesis of lipid A, a component oflipopolysaccharide (LPS) in the outer membrane outer leaflet of most Gram-negative bacteria. Some differences are found between lipid A of different species. This protein represents the third step from UDP-N-acetyl-D-glucosamine. The group added at this step generally is 14:0(3-OH) (myristate) but may vary; in Aquifex it appears to be 16:0(3-OH) (palmitate). |
| >cd03351 LbH_UDP-GlcNAc_AT UDP-N-acetylglucosamine O-acyltransferase (UDP-GlcNAc acyltransferase): Proteins in this family catalyze the transfer of (R)-3-hydroxymyristic acid from its acyl carrier protein thioester to UDP-GlcNAc | Back alignment and domain information |
|---|
Probab=92.30 E-value=0.12 Score=50.78 Aligned_cols=41 Identities=15% Similarity=0.197 Sum_probs=30.0
Q ss_pred CceEEEeeEEECCCcEEeeeEEEE--------------ecCCCceeeCCCCeeec
Q 012172 420 DSLKVTGDVWFGANITLKGKVTIA--------------AKSGEKLEIPDGAVLEN 460 (469)
Q Consensus 420 ~~l~v~G~v~fg~~V~i~g~~~I~--------------~~~~~~~~I~~~s~le~ 460 (469)
.+++|.+++++|++++|..+++|. ...|+.+.|.++++|..
T Consensus 40 ~~~~I~~~v~IG~~~~I~~~a~I~~~~~~~~~~g~~~~v~IG~~~~Ig~~~~I~~ 94 (254)
T cd03351 40 SHVVIDGPTTIGKNNRIFPFASIGEAPQDLKYKGEPTRLEIGDNNTIREFVTIHR 94 (254)
T ss_pred CCcEEeCCeEECCCCEEecceeecCcccceeecCCCceEEECCCCEECCccEEec
Confidence 567788888888888888888884 24556666666666653
|
It is the first enzyme in the lipid A biosynthetic pathway and is also referred to as LpxA. Lipid A is essential for the growth of Escherichia coli and related bacteria. It is also essential for maintaining the integrity of the outer membrane. UDP-GlcNAc acyltransferase is a homotrimer of left-handed parallel beta helix (LbH) subunits. Each subunit contains an N-terminal LbH region with 9 turns, each containing three imperfect tandem repeats of a hexapeptide repeat motif (X-[STAV]-X-[LIV]-[GAED]-X), and a C-terminal alpha-helical region. |
| >PRK14358 glmU bifunctional N-acetylglucosamine-1-phosphate uridyltransferase/glucosamine-1-phosphate acetyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=92.22 E-value=0.13 Score=55.37 Aligned_cols=54 Identities=11% Similarity=0.253 Sum_probs=44.3
Q ss_pred ccccCceEEEeeEEECCCcEEeeeEEEEe--cCCCceeeCCCCeeecceecCCCCC
Q 012172 416 IIELDSLKVTGDVWFGANITLKGKVTIAA--KSGEKLEIPDGAVLENKEINGPGDL 469 (469)
Q Consensus 416 ~~~~~~l~v~G~v~fg~~V~i~g~~~I~~--~~~~~~~I~~~s~le~~~v~~~~~~ 469 (469)
+.....+.+.+++++|+|+.|.++|+|.+ ..|..+.|.++|+|++++|+.+..|
T Consensus 259 ~~~~~~~~i~~~~~Ig~~~~I~~~~~I~~~v~Ig~~~~I~~~~~i~~svI~~~~~I 314 (481)
T PRK14358 259 LQDPGTILIEDTVTLGRDVTIEPGVLLRGQTRVADGVTIGAYSVVTDSVLHEGAVI 314 (481)
T ss_pred EecCCeeeccCCcEECCCCEEeCCcEEeCCcEECCCCEECCCCEEeeeEECCCCEE
Confidence 33345666789999999999999999984 3688899999999999999887653
|
|
| >cd05787 LbH_eIF2B_epsilon eIF-2B epsilon subunit, central Left-handed parallel beta-Helix (LbH) domain: eIF-2B is a eukaryotic translation initiator, a guanine nucleotide exchange factor (GEF) composed of five different subunits (alpha, beta, gamma, delta and epsilon) | Back alignment and domain information |
|---|
Probab=92.18 E-value=0.17 Score=39.74 Aligned_cols=39 Identities=15% Similarity=0.165 Sum_probs=18.6
Q ss_pred EECCCcEEeeeEEEE-ecCCCceeeCCCCeee-cceecCCC
Q 012172 429 WFGANITLKGKVTIA-AKSGEKLEIPDGAVLE-NKEINGPG 467 (469)
Q Consensus 429 ~fg~~V~i~g~~~I~-~~~~~~~~I~~~s~le-~~~v~~~~ 467 (469)
.+++++.|+.++.|. +..++.+.|++++++. +++|+.+.
T Consensus 35 ~i~~~~~i~~~~~i~~~~i~~~~~i~~~~~i~~~~~v~~~~ 75 (79)
T cd05787 35 YIWDDVTIEDGCTIHHSIVADGAVIGKGCTIPPGSLISFGV 75 (79)
T ss_pred EEeCCCEECCCCEEeCcEEcCCCEECCCCEECCCCEEeCCc
Confidence 344444444444444 2234445566666554 35555443
|
eIF2B is important for regenerating GTP-bound eIF2 during the initiation process. This event is obligatory for eIF2 to bind initiator methionyl-tRNA, forming the ternary initiation complex. The eIF-2B epsilon subunit contains an N-terminal domain that resembles a dinucleotide-binding Rossmann fold, a central LbH domain containing 4 turns, each containing three imperfect tandem repeats of a hexapeptide repeat motif (X-[STAV]-X-[LIV]-[GAED]-X), and a C-terminal domain of unknown function that is present in eIF-4 gamma, eIF-5, and eIF-2B epsilon. The epsilon and gamma subunits form the catalytic subcomplex of eIF-2B, which binds eIF2 and catalyzes guanine nucleotide exchange. |
| >cd04645 LbH_gamma_CA_like Gamma carbonic anhydrase-like: This family is composed of gamma carbonic anhydrase (CA), Ferripyochelin Binding Protein (FBP), E | Back alignment and domain information |
|---|
Probab=91.96 E-value=0.28 Score=44.19 Aligned_cols=41 Identities=29% Similarity=0.405 Sum_probs=30.2
Q ss_pred CceEEEeeEEECCCcEEeeeEEEEec-----CCCceeeCCCCeeec
Q 012172 420 DSLKVTGDVWFGANITLKGKVTIAAK-----SGEKLEIPDGAVLEN 460 (469)
Q Consensus 420 ~~l~v~G~v~fg~~V~i~g~~~I~~~-----~~~~~~I~~~s~le~ 460 (469)
.+.+|.|++++|+++.|.++++|.+. .|+.+.|.++++|.+
T Consensus 10 ~~a~i~g~v~ig~~~~I~~~~~I~~~~~~~~IG~~~~I~~~~~I~~ 55 (153)
T cd04645 10 PNATVIGDVTLGEGSSVWFGAVLRGDVNPIRIGERTNIQDGSVLHV 55 (153)
T ss_pred CCCEEEEeEEECCCcEEcCCeEEECCCCceEECCCCEECCCcEEec
Confidence 56788899999999999999988854 455555555555555
|
coli paaY protein, and similar proteins. CAs are zinc-containing enzymes that catalyze the reversible hydration of carbon dioxide in a two-step mechanism, involving the nucleophilic attack of a zinc-bound hydroxide ion on carbon dioxide, followed by the regeneration of the active site by ionization of the zinc-bound water molecule and removal of a proton from the active site. They are ubiquitous enzymes involved in fundamental processes like photosynthesis, respiration, pH homeostasis and ion transport. There are three evolutionary distinct groups - alpha, beta and gamma carbonic anhydrases - which show no significant sequence identity or structural similarity. Gamma CAs are trimeric enzymes with left-handed parallel beta helix (LbH) structural domain. |
| >cd04745 LbH_paaY_like paaY-like: This group is composed by uncharacterized proteins with similarity to the protein product of the E | Back alignment and domain information |
|---|
Probab=91.89 E-value=0.26 Score=44.61 Aligned_cols=40 Identities=15% Similarity=0.111 Sum_probs=21.7
Q ss_pred eEEECCCcEEeeeEEEE-ecCCCceeeCCCCeeec-ceecCC
Q 012172 427 DVWFGANITLKGKVTIA-AKSGEKLEIPDGAVLEN-KEINGP 466 (469)
Q Consensus 427 ~v~fg~~V~i~g~~~I~-~~~~~~~~I~~~s~le~-~~v~~~ 466 (469)
++.+|+++.|+.+++|. +..|+.+.|.++++|.+ ++|+.+
T Consensus 61 ~~~Ig~~~~Ig~~~~i~~~~Ig~~~~Ig~~~~I~~g~~Ig~~ 102 (155)
T cd04745 61 DTVLEENGHIGHGAILHGCTIGRNALVGMNAVVMDGAVIGEE 102 (155)
T ss_pred CeEEcCCCEECCCcEEECCEECCCCEECCCCEEeCCCEECCC
Confidence 35555666665555555 33455566666666644 455444
|
coli paaY gene, which is part of the paa gene cluster responsible for phenylacetic acid degradation. Proteins in this group are expected to adopt the left-handed parallel beta-helix (LbH) structure. They contain imperfect tandem repeats of a hexapeptide repeat motif (X-[STAV]-X-[LIV]-[GAED]-X). Similarity to gamma carbonic anhydrase and Ferripyochelin Binding Protein (FBP) may suggest metal binding capacity. |
| >PF02348 CTP_transf_3: Cytidylyltransferase; InterPro: IPR003329 Synonym(s): CMP-N-acetylneuraminic acid synthetase Acylneuraminate cytidylyltransferase (2 | Back alignment and domain information |
|---|
Probab=91.80 E-value=11 Score=35.30 Aligned_cols=172 Identities=13% Similarity=0.193 Sum_probs=86.5
Q ss_pred cCCCCC-C-ccccccCCCCchHHHHHHHHHHhhhhcCCcccEEEecCCCChHHHHHHHHHhcCCCCceEEEEecCcceec
Q 012172 92 TMGCTG-P-KSVIEVRNGLTFLDLIVIQIENLNAKYGCNVPLLLMNSFNTHDDTSKIIEKYSKSNVEIHTFNQSQYPRLC 169 (469)
Q Consensus 92 Rmg~~~-P-K~l~~v~~gks~L~~~~~~i~~l~~~~~~~iplviMtS~~t~e~t~~~~~~~~g~~~~i~~f~Q~~~P~l~ 169 (469)
||||++ | |.+.++ +|+||++|.++++++.+.- =.+++-| +++++.+.++++. ..+.++. +.
T Consensus 7 R~gS~rlp~Knl~~l-~gkpLi~~~i~~a~~s~~~----d~IvVaT---d~~~i~~~~~~~g---~~v~~~~-~~----- 69 (217)
T PF02348_consen 7 RGGSKRLPGKNLKPL-GGKPLIEYVIERAKQSKLI----DEIVVAT---DDEEIDDIAEEYG---AKVIFRR-GS----- 69 (217)
T ss_dssp -SSSSSSTTGGGSEE-TTEEHHHHHHHHHHHTTTT----SEEEEEE---SSHHHHHHHHHTT---SEEEE---TT-----
T ss_pred CCCCCCCCcchhhHh-CCccHHHHHHHHHHhCCCC----CeEEEeC---CCHHHHHHHHHcC---CeeEEcC-hh-----
Confidence 777766 3 778899 9999999999999876521 1356644 4677777887753 2333211 11
Q ss_pred CCCCcccCCCCCCCCcccccCCCcccchhccccchHHHHHHcCCc---EEEEEeCcc-ccccccH-HHHHHHHHcCCcce
Q 012172 170 ADDFVPLPCKGKTDKDGWYPPGHGDVFPSLMNSGKLDALISQGKE---YVFAANSDN-LGAIVDL-KILNHLIQNKNEYC 244 (469)
Q Consensus 170 ~~~~~~~~~~~~~~~~~~~P~GhGd~~~~L~~sg~L~~l~~~G~~---~v~v~n~DN-L~~~~dp-~~Lg~~~~~~~~~~ 244 (469)
+.+..... .+.+.....+ ++...++|+ |..+.++ ..+..+.+...++.
T Consensus 70 ----------------------~~~~~~r~-----~~~~~~~~~~~~~~vv~~~~d~Pll~~~~i~~~i~~~~~~~~~~~ 122 (217)
T PF02348_consen 70 ----------------------LADDTDRF-----IEAIKHFLADDEDIVVRLQGDSPLLDPTSIDRAIEDIREANEDYI 122 (217)
T ss_dssp ----------------------SSSHHHHH-----HHHHHHHTCSTTSEEEEESTTETT--HHHHHHHHHHHHHSTTSSE
T ss_pred ----------------------hcCCcccH-----HHHHHHhhhhHHhhccccCCeeeECCHHHHHHHHHHHhcCchhhh
Confidence 22221111 2233333334 899999999 8877665 34555555555532
Q ss_pred EE-Eeeec-----cCCCcceEEEEeCCeeEEEEeccCChhhhhhccccccccEEEEEeEEEeHH-HHHHHH
Q 012172 245 ME-VTPKT-----LADVKGGTLISYEGKVQLLEIAQVPDEHVNEFKSIEKFKIFNTNNLWVNLK-AIKRLV 308 (469)
Q Consensus 245 ~~-v~~k~-----~~~~~~G~iv~~~g~~~ivEy~~~~~e~~~~~~~~~~~~~~Nt~~~~~~l~-~L~~~l 308 (469)
.. +.... ......=.+.+.++....-+....+.--... .....+...+.+.+.+... .+.++-
T Consensus 123 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~ 192 (217)
T PF02348_consen 123 SNLVDPVGSSVEIFNFNPLKVLFDDDGLELYFSEHVIPYIRRNP-EEFKYFYIRQVGIYAFRKEMFLERFT 192 (217)
T ss_dssp EEEEEEECSHHHHTSTTSTEEEECTTSBEEEEESSESSECHHHH-CSSSSTEEEEEEEEEEEHHHHHHHHH
T ss_pred ccccccccchhhcccccceEEEeccccchhhcccCCCccccccc-cccccccccccccccccccccccccc
Confidence 22 21111 1111122233333333322222232111000 0001244678999999987 555554
|
7.7.43 from EC) (CMP-NeuAc synthetase) catalyzes the reaction of CTP and NeuAc to form CMP-NeuAc, which is the nucleotide sugar donor used by sialyltransferases []. The outer membrane lipooligosaccharides of some microorganisms contain terminal sialic acid attached to N-acetyllactosamine and so this modification may be important in pathogenesis.; GO: 0009103 lipopolysaccharide biosynthetic process; PDB: 3K8D_C 1VH1_B 3K8E_C 1QWJ_A 3EWI_A 1VIC_B 3DUV_A 1VH3_C 3TQD_A 2Y6P_C .... |
| >PF00132 Hexapep: Bacterial transferase hexapeptide (six repeats); InterPro: IPR001451 A variety of bacterial transferases contain a repeat structure composed of tandem repeats of a [LIV]-G-X(4) hexapeptide, which, in the tertiary structure of LpxA (UDP N-acetylglucosamine acyltransferase) [], has been shown to form a left-handed parallel beta helix | Back alignment and domain information |
|---|
Probab=91.61 E-value=0.14 Score=34.29 Aligned_cols=10 Identities=30% Similarity=0.348 Sum_probs=4.2
Q ss_pred eeeCCCCeee
Q 012172 450 LEIPDGAVLE 459 (469)
Q Consensus 450 ~~I~~~s~le 459 (469)
+.|.++++|.
T Consensus 26 ~~I~~~~~I~ 35 (36)
T PF00132_consen 26 CVIGPGVVIG 35 (36)
T ss_dssp EEEETTEEEE
T ss_pred CEEcCCCEEC
Confidence 3344444443
|
A number of different transferase protein families contain this repeat, such as galactoside acetyltransferase-like proteins [], the gamma-class of carbonic anhydrases [], and tetrahydrodipicolinate-N-succinlytransferases (DapD), the latter containing an extra N-terminal 3-helical domain [].; PDB: 3DK5_A 3F1X_A 2JF2_A 1LXA_A 2AQ9_A 2QIV_X 2QIA_A 2JF3_A 1T3D_C 3R8Y_F .... |
| >COG1044 LpxD UDP-3-O-[3-hydroxymyristoyl] | Back alignment and domain information |
|---|
Probab=91.53 E-value=0.23 Score=50.61 Aligned_cols=23 Identities=17% Similarity=0.358 Sum_probs=10.5
Q ss_pred ceEEEeeEEECCCcEEeeeEEEE
Q 012172 421 SLKVTGDVWFGANITLKGKVTIA 443 (469)
Q Consensus 421 ~l~v~G~v~fg~~V~i~g~~~I~ 443 (469)
+++|+.++.+|+||.|.++|+|-
T Consensus 123 ~~vI~~~v~IG~~~~I~~~~vIg 145 (338)
T COG1044 123 NVVIGAGVVIGENVVIGAGAVIG 145 (338)
T ss_pred CeEECCCCEECCCcEECCCCEEC
Confidence 44444444444444444444443
|
|
| >cd00208 LbetaH Left-handed parallel beta-Helix (LbetaH or LbH) domain: The alignment contains 5 turns, each containing three imperfect tandem repeats of a hexapeptide repeat motif (X-[STAV]-X-[LIV]-[GAED]-X) | Back alignment and domain information |
|---|
Probab=91.45 E-value=0.28 Score=38.02 Aligned_cols=24 Identities=25% Similarity=0.383 Sum_probs=15.7
Q ss_pred ceEEEeeEEECCCcEEeeeEEEEe
Q 012172 421 SLKVTGDVWFGANITLKGKVTIAA 444 (469)
Q Consensus 421 ~l~v~G~v~fg~~V~i~g~~~I~~ 444 (469)
+.+|.+.+.+|++++|.++|.|.+
T Consensus 12 ~~~i~~~~~Ig~~~~I~~~~~i~~ 35 (78)
T cd00208 12 KAVIRGPVVIGDNVNIGPGAVIGA 35 (78)
T ss_pred CCEEeCcEEECCCCEECCCCEEEe
Confidence 455566677777777777766664
|
Proteins containing hexapeptide repeats are often enzymes showing acyltransferase activity, however, some subfamilies in this hierarchy also show activities related to ion transport or translation initiation. Many are trimeric in their active forms. |
| >cd04652 LbH_eIF2B_gamma_C eIF-2B gamma subunit, C-terminal Left-handed parallel beta-Helix (LbH) domain: eIF-2B is a eukaryotic translation initiator, a guanine nucleotide exchange factor (GEF) composed of five different subunits (alpha, beta, gamma, delta and epsilon) | Back alignment and domain information |
|---|
Probab=91.40 E-value=0.23 Score=39.73 Aligned_cols=46 Identities=26% Similarity=0.299 Sum_probs=29.1
Q ss_pred eEEEeeEEECCCcEEeeeEEEEec-CCCceeeCCCCeeecceecCCCC
Q 012172 422 LKVTGDVWFGANITLKGKVTIAAK-SGEKLEIPDGAVLENKEINGPGD 468 (469)
Q Consensus 422 l~v~G~v~fg~~V~i~g~~~I~~~-~~~~~~I~~~s~le~~~v~~~~~ 468 (469)
..|. ++.+|+++.|+.++.|..+ .+..+.|.+++.|++++|+.+..
T Consensus 12 ~~i~-~~~Ig~~~~I~~~~~i~~s~i~~~~~ig~~~~l~~svi~~~~~ 58 (81)
T cd04652 12 TSIK-RSVIGANCKIGKRVKITNCVIMDNVTIEDGCTLENCIIGNGAV 58 (81)
T ss_pred CEEe-CcEECCCCEECCCCEEeCcEEeCCCEECCCCEEeccEEeCCCE
Confidence 3443 4666666666666666633 45556777778887777766543
|
eIF2B is important for regenerating GTP-bound eIF2 during the initiation process. This event is obligatory for eIF2 to bind initiator methionyl-tRNA, forming the ternary initiation complex. The eIF-2B gamma subunit contains an N-terminal domain that resembles a dinucleotide-binding Rossmann fold and a C-terminal LbH domain with 4 turns, each containing three imperfect tandem repeats of a hexapeptide repeat motif (X-[STAV]-X-[LIV]-[GAED]-X). The epsilon and gamma subunits form the catalytic subcomplex of eIF-2B, which binds eIF2 and catalyzes guanine nucleotide exchange. |
| >cd04650 LbH_FBP Ferripyochelin Binding Protein (FBP): FBP is an outer membrane protein which plays a role in iron acquisition | Back alignment and domain information |
|---|
Probab=91.40 E-value=0.35 Score=43.92 Aligned_cols=41 Identities=17% Similarity=0.228 Sum_probs=29.4
Q ss_pred CceEEEeeEEECCCcEEeeeEEEEec-----CCCceeeCCCCeeec
Q 012172 420 DSLKVTGDVWFGANITLKGKVTIAAK-----SGEKLEIPDGAVLEN 460 (469)
Q Consensus 420 ~~l~v~G~v~fg~~V~i~g~~~I~~~-----~~~~~~I~~~s~le~ 460 (469)
.+.+|.|++++|+++.|..+++|.+. .|+.+.|.++++|..
T Consensus 11 ~~~~i~~~v~iG~~~~I~~~a~I~~~~~~i~Ig~~~~Ig~~~~I~~ 56 (154)
T cd04650 11 PTSYVIGDVVIGELTSVWHYAVIRGDNDSIYIGKYSNVQENVSIHT 56 (154)
T ss_pred CCCEEEeeEEECCCCEEcCCeEEEcCCCcEEECCCCEECCCCEEEe
Confidence 55667788888888888888888853 455566666666654
|
It binds iron when it is complexed with pyochelin. It adopts the left-handed parallel beta-helix (LbH) structure, and contains imperfect tandem repeats of a hexapeptide repeat motif (X-[STAV]-X-[LIV]-[GAED]-X). Proteins containing hexapeptide repeats are often enzymes showing acyltransferase activity. Acyltransferase activity has not been observed in this group. |
| >PRK14359 glmU bifunctional N-acetylglucosamine-1-phosphate uridyltransferase/glucosamine-1-phosphate acetyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=91.40 E-value=0.21 Score=52.62 Aligned_cols=63 Identities=16% Similarity=0.127 Sum_probs=32.9
Q ss_pred CCeEEECCCcccccccccccccCCcccccCceEEEe----eEEECCCcEEeeeEEEEe-cCCCceeeCCCCeeecceecC
Q 012172 391 NPTIELGPEFKKVGNFLSRFKSIPSIIELDSLKVTG----DVWFGANITLKGKVTIAA-KSGEKLEIPDGAVLENKEING 465 (469)
Q Consensus 391 ~p~V~l~~~~~~~~~~~~~i~~~p~~~~~~~l~v~G----~v~fg~~V~i~g~~~I~~-~~~~~~~I~~~s~le~~~v~~ 465 (469)
.+.+.++|... +. ++.+ .+.+.|++ ++.+|++++|.++++|.+ ..|+.+.|+. ++++++.|+.
T Consensus 269 g~~~~I~~~~~--------i~--~~~i-~~~~~I~~~~i~~~~ig~~~~i~~~~~i~~~~ig~~~~i~~-~~~~~~~i~~ 336 (430)
T PRK14359 269 EEGVRILGKSK--------IE--NSHI-KAHSVIEESIIENSDVGPLAHIRPKSEIKNTHIGNFVETKN-AKLNGVKAGH 336 (430)
T ss_pred CCCCEECCCeE--------EE--eeEE-CCCCEEeccEEeCCEECCCCEECCCcEEeccEEcCcEEEcc-cEeccccccc
Confidence 67777777754 21 1111 13344444 455677777777776663 2344444544 3345555544
|
|
| >cd04646 LbH_Dynactin_6 Dynactin 6 (or subunit p27): Dynactin is a major component of the activator complex that stimulates dynein-mediated vesicle transport | Back alignment and domain information |
|---|
Probab=91.37 E-value=0.4 Score=44.04 Aligned_cols=17 Identities=29% Similarity=0.458 Sum_probs=9.6
Q ss_pred eEEECCCcEEeeeEEEE
Q 012172 427 DVWFGANITLKGKVTIA 443 (469)
Q Consensus 427 ~v~fg~~V~i~g~~~I~ 443 (469)
.+.+|+++.|..+|+|.
T Consensus 38 ~i~IG~~~~I~~~~~I~ 54 (164)
T cd04646 38 PIIIGENNIIEEQVTIV 54 (164)
T ss_pred CeEECCCCEECCCcEEe
Confidence 45555555555555554
|
Dynactin is a heterocomplex of at least eight subunits, including a 150,000-MW protein called Glued, the actin-capping protein Arp1, and dynamatin. In vitro binding experiments show that dynactin enhances dynein-dependent motility, possibly through interaction with microtubules and vesicles. Subunit p27 is part of the pointed-end subcomplex in dynactin that also includes p25, p26, and Arp11. This subcomplex interacts with membranous cargoes. p25 and p27 contain the imperfect tandem repeats of a hexapeptide repeat motif (X-[STAV]-X-[LIV]-[GAED]-X), indicating a left-handed parallel beta helix (LbH) structural domain. Proteins containing hexapeptide repeats are often enzymes showing acyltransferase activity. |
| >PRK05289 UDP-N-acetylglucosamine acyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=91.07 E-value=0.23 Score=49.31 Aligned_cols=41 Identities=15% Similarity=0.196 Sum_probs=28.1
Q ss_pred CceEEEeeEEECCCcEEeeeEEEEe--------------cCCCceeeCCCCeeec
Q 012172 420 DSLKVTGDVWFGANITLKGKVTIAA--------------KSGEKLEIPDGAVLEN 460 (469)
Q Consensus 420 ~~l~v~G~v~fg~~V~i~g~~~I~~--------------~~~~~~~I~~~s~le~ 460 (469)
++++|.|++++|++++|..+++|.+ ..|+.+.|.++++|..
T Consensus 43 ~~~~I~g~~~IG~~~~I~~~a~Ig~~~q~~~~~g~~~~v~IG~~~~I~e~~~I~~ 97 (262)
T PRK05289 43 SHVVIDGHTTIGKNNRIFPFASIGEDPQDLKYKGEPTRLVIGDNNTIREFVTINR 97 (262)
T ss_pred CCCEEcCccEECCCCEEcccceecCCceeecccCCCCeEEECCCCEECCCeEEec
Confidence 6777888888888888888888842 3445555555555543
|
|
| >cd00710 LbH_gamma_CA Gamma carbonic anhydrases (CA): Carbonic anhydrases are zinc-containing enzymes that catalyze the reversible hydration of carbon dioxide in a two-step mechanism, involving the nucleophilic attack of a zinc-bound hydroxide ion on carbon dioxide, followed by the regeneration of the active site by ionization of the zinc-bound water molecule and removal of a proton from the active site | Back alignment and domain information |
|---|
Probab=91.06 E-value=0.4 Score=44.08 Aligned_cols=47 Identities=26% Similarity=0.317 Sum_probs=35.5
Q ss_pred CceEEEeeEEECCCcEEeeeEEEE-ecCCCceeeCCCCeeecceecCC
Q 012172 420 DSLKVTGDVWFGANITLKGKVTIA-AKSGEKLEIPDGAVLENKEINGP 466 (469)
Q Consensus 420 ~~l~v~G~v~fg~~V~i~g~~~I~-~~~~~~~~I~~~s~le~~~v~~~ 466 (469)
..+.+.|++++|+++.|+++|.|. +..|+.+.|.++|++.++.|+.+
T Consensus 75 ~~~~i~g~~~Ig~~~~Ig~~~~I~~~~Ig~~~~Ig~~s~i~~~~i~~~ 122 (167)
T cd00710 75 HGAIVHGPAYIGDNCFIGFRSVVFNAKVGDNCVIGHNAVVDGVEIPPG 122 (167)
T ss_pred CCCEEeCCEEECCCCEECCCCEEECCEECCCCEEcCCCEEeCCEeCCC
Confidence 567777888888888888888887 44677788888888877666544
|
They are ubiquitous enzymes involved in fundamental processes like photosynthesis, respiration, pH homeostasis and ion transport. There are three distinct groups of carbonic anhydrases - alpha, beta and gamma - which show no significant sequence identity or structural similarity. Gamma CAs are homotrimeric enzymes, with each subunit containing a left-handed parallel beta helix (LbH) structural domain. |
| >COG4284 UDP-glucose pyrophosphorylase [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=90.83 E-value=0.13 Score=54.42 Aligned_cols=77 Identities=16% Similarity=0.105 Sum_probs=56.3
Q ss_pred ccccEEEEEeEEEeHHHHHHHHHhc------cccccccc----CCCcCCCcceehhHH-Hh-hhHhhhc--ccceeEeec
Q 012172 287 EKFKIFNTNNLWVNLKAIKRLVEAD------ALKMEIIP----NPKEVDGIKVLQLET-AA-GAAIRFF--DHAIGCNVH 352 (469)
Q Consensus 287 ~~~~~~Nt~~~~~~l~~L~~~l~~~------~~~lp~~~----n~K~~~g~~~iqle~-~~-~d~~~~~--~~~~~v~v~ 352 (469)
+-+..=|+++|++++++|.+..... .-.+|+.. -.+.+ +++++++|. |+ +|.|.+- .+..+..||
T Consensus 317 ~~~n~Nni~l~~~~~~~l~~~~~l~Lpi~~a~Kki~~~~~~~~~~t~i-~~~i~kfe~~FI~fDlF~~~s~~~~~~~~vp 395 (472)
T COG4284 317 KYFNTNNIWLHLFSVKFLKEAAYLNLPIHKAIKKIPQLDNIIQLTTAI-GKNISKFENEFIPFDLFLYKSDENGGLLLVP 395 (472)
T ss_pred eeeccccceeehhHHHHHHhhhccCCcchhhhcccCccccceeecccc-ccchhhccccccceeeeEEEecCCCceEecc
Confidence 3445568899999999988766531 12344331 22222 788999997 99 9999887 788999999
Q ss_pred Cc-cccccCCchh
Q 012172 353 RS-RFLPVKATSD 364 (469)
Q Consensus 353 r~-eF~pVKn~~d 364 (469)
|. ||+|+||-.+
T Consensus 396 R~~~f~Plkn~~~ 408 (472)
T COG4284 396 RFGEFSPLKNLEG 408 (472)
T ss_pred ccCCCCchhhccC
Confidence 97 7999999765
|
|
| >cd05635 LbH_unknown Uncharacterized proteins, Left-handed parallel beta-Helix (LbH) domain: Members in this group are uncharacterized bacterial proteins containing a LbH domain with multiple turns, each containing three imperfect tandem repeats of a hexapeptide repeat motif (X-[STAV]-X-[LIV]-[GAED]-X) | Back alignment and domain information |
|---|
Probab=90.80 E-value=0.35 Score=40.84 Aligned_cols=47 Identities=9% Similarity=0.114 Sum_probs=32.2
Q ss_pred CceEEEeeEEECCCcEEeeeEEEE-ecCCCceeeCCCCeeecceecCCCC
Q 012172 420 DSLKVTGDVWFGANITLKGKVTIA-AKSGEKLEIPDGAVLENKEINGPGD 468 (469)
Q Consensus 420 ~~l~v~G~v~fg~~V~i~g~~~I~-~~~~~~~~I~~~s~le~~~v~~~~~ 468 (469)
...+|++++++|++++|++ .|. +...+.+.|.++++|++++|+.+.+
T Consensus 40 ~~~~I~~~v~IG~~~~Ig~--~i~~svi~~~~~i~~~~~lg~siIg~~v~ 87 (101)
T cd05635 40 MGARIYGNTTIGPTCKIGG--EVEDSIIEGYSNKQHDGFLGHSYLGSWCN 87 (101)
T ss_pred CCCEEeCcCEECCCCEECC--EECccEEcCCCEecCcCEEeeeEECCCCE
Confidence 4567778888888888864 233 2233456688888888888887654
|
Proteins containing hexapeptide repeats are often enzymes showing acyltransferase activity. |
| >TIGR01852 lipid_A_lpxA acyl-[acyl-carrier-protein]--UDP-N-acetylglucosamine O-acyltransferase | Back alignment and domain information |
|---|
Probab=90.64 E-value=0.28 Score=48.33 Aligned_cols=40 Identities=13% Similarity=0.174 Sum_probs=29.8
Q ss_pred CceEEEeeEEECCCcEEeeeEEEE--------------ecCCCceeeCCCCeee
Q 012172 420 DSLKVTGDVWFGANITLKGKVTIA--------------AKSGEKLEIPDGAVLE 459 (469)
Q Consensus 420 ~~l~v~G~v~fg~~V~i~g~~~I~--------------~~~~~~~~I~~~s~le 459 (469)
.+++|.|++++|++++|..+++|. ...|+.+.|.++++|.
T Consensus 39 ~~~~I~~~v~IG~~~~I~~~a~I~~~~~~~~~~g~~~~v~IG~~~~I~~~~~I~ 92 (254)
T TIGR01852 39 SHVVILGHTTIGEGTRIFPGAVIGGVPQDLKYKGERTELIIGDNNTIREFVTIN 92 (254)
T ss_pred CCCEEeeeEEECCCCEECCCcEeCCCCcceeecCccceEEECCCCEECCCCEEC
Confidence 567888899999999998888885 2355556666666665
|
This model describes LpxA, an enzyme for the biosynthesis of lipid A, a component oflipopolysaccharide (LPS) in the outer membrane outer leaflet of most Gram-negative bacteria. Some differences are found between lipid A of different species, but this protein represents the first step (from UDP-N-acetyl-D-glucosamine) and appears to be conserved in function. Proteins from this family contain many copies of the bacterial transferase hexapeptide repeat (pfam00132). |
| >PRK14352 glmU bifunctional N-acetylglucosamine-1-phosphate uridyltransferase/glucosamine-1-phosphate acetyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=90.62 E-value=0.31 Score=52.50 Aligned_cols=53 Identities=13% Similarity=0.236 Sum_probs=42.2
Q ss_pred ccccCceEEEeeEEECCCcEEeeeEEEE--ecCCCceeeCCCCeeecceecCCCC
Q 012172 416 IIELDSLKVTGDVWFGANITLKGKVTIA--AKSGEKLEIPDGAVLENKEINGPGD 468 (469)
Q Consensus 416 ~~~~~~l~v~G~v~fg~~V~i~g~~~I~--~~~~~~~~I~~~s~le~~~v~~~~~ 468 (469)
+...+...|.++|++|++++|..+++|. ...|+.+.|.++++|++++|+.+..
T Consensus 260 ~~~~~~~~i~~~v~ig~~~~I~~~~~i~~~v~Ig~~~~I~~~~~i~~~~Ig~~~~ 314 (482)
T PRK14352 260 IVDPATTWIDVDVTIGRDVVIHPGTQLLGRTTIGEDAVVGPDTTLTDVTVGEGAS 314 (482)
T ss_pred EECCCeEEEeCCEEECCCcEEeCCcEEeecCEECCCCEECCCCEEecCEECCCCE
Confidence 3333567888999999999999988888 4578888899999988888877654
|
|
| >cd04647 LbH_MAT_like Maltose O-acyltransferase (MAT)-like: This family is composed of maltose O-acetyltransferase, galactoside O-acetyltransferase (GAT), xenobiotic acyltransferase (XAT) and similar proteins | Back alignment and domain information |
|---|
Probab=90.58 E-value=0.56 Score=39.11 Aligned_cols=16 Identities=19% Similarity=0.403 Sum_probs=6.5
Q ss_pred eEEECCCcEEeeeEEE
Q 012172 427 DVWFGANITLKGKVTI 442 (469)
Q Consensus 427 ~v~fg~~V~i~g~~~I 442 (469)
++.+|+++.|+.+++|
T Consensus 58 ~~~Ig~~~~ig~~~~i 73 (109)
T cd04647 58 PIVIGDDVWIGANVVI 73 (109)
T ss_pred CeEECCCCEECCCCEE
Confidence 3444444444433333
|
MAT and GAT catalyze the CoA-dependent acetylation of the 6-hydroxyl group of their respective sugar substrates. MAT acetylates maltose and glucose exclusively while GAT specifically acetylates galactopyranosides. XAT catalyzes the CoA-dependent acetylation of a variety of hydroxyl-bearing acceptors such as chloramphenicol and streptogramin, among others. XATs are implicated in inactivating xenobiotics leading to xenobiotic resistance in patients. Members of this family contain a a left-handed parallel beta-helix (LbH) domain with at least 5 turns, each containing three imperfect tandem repeats of a hexapeptide repeat motif (X-[STAV]-X-[LIV]-[GAED]-X). They are trimeric in their active form. |
| >PRK14356 glmU bifunctional N-acetylglucosamine-1-phosphate uridyltransferase/glucosamine-1-phosphate acetyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=90.27 E-value=0.27 Score=52.28 Aligned_cols=40 Identities=13% Similarity=0.121 Sum_probs=17.9
Q ss_pred EEECCCcEEeeeEEEE-ecCCCceeeCCCCeee-cceecCCC
Q 012172 428 VWFGANITLKGKVTIA-AKSGEKLEIPDGAVLE-NKEINGPG 467 (469)
Q Consensus 428 v~fg~~V~i~g~~~I~-~~~~~~~~I~~~s~le-~~~v~~~~ 467 (469)
+++|+|++|+.++.|. +..++.+.|.++++|. +++|+.+.
T Consensus 305 ~~i~~~~~I~~~~~i~~~~ig~~~~Ig~~~~i~~~~~ig~~~ 346 (456)
T PRK14356 305 AVVSSGATIHSFSHLEGAEVGDGCSVGPYARLRPGAVLEEGA 346 (456)
T ss_pred eEECCCCEEeeeEEEcccceecccEECCceEECCCCEECCCC
Confidence 3444444444444444 2233344455554443 44444443
|
|
| >PLN02296 carbonate dehydratase | Back alignment and domain information |
|---|
Probab=90.23 E-value=0.36 Score=48.14 Aligned_cols=22 Identities=23% Similarity=0.249 Sum_probs=10.2
Q ss_pred eEEEeeEEECCCcEEeeeEEEE
Q 012172 422 LKVTGDVWFGANITLKGKVTIA 443 (469)
Q Consensus 422 l~v~G~v~fg~~V~i~g~~~I~ 443 (469)
.+|.|+|.+|+++.|..+|+|.
T Consensus 65 A~V~G~V~IG~~~~I~~gavI~ 86 (269)
T PLN02296 65 ASVIGDVQVGRGSSIWYGCVLR 86 (269)
T ss_pred cEEEcceEECCCCEECCCCEEE
Confidence 3344444444444444444444
|
|
| >cd04651 LbH_G1P_AT_C Glucose-1-phosphate adenylyltransferase, C-terminal Left-handed parallel beta helix (LbH) domain: Glucose-1-phosphate adenylyltransferase is also known as ADP-glucose synthase or ADP-glucose pyrophosphorylase | Back alignment and domain information |
|---|
Probab=90.22 E-value=0.46 Score=40.10 Aligned_cols=42 Identities=10% Similarity=0.021 Sum_probs=28.3
Q ss_pred eEEECCCcEEeeeEEEE-ecCCCceeeCCCCeeecceecCCCC
Q 012172 427 DVWFGANITLKGKVTIA-AKSGEKLEIPDGAVLENKEINGPGD 468 (469)
Q Consensus 427 ~v~fg~~V~i~g~~~I~-~~~~~~~~I~~~s~le~~~v~~~~~ 468 (469)
+..+|++++|+.++.|. +-.+..+.|+++++|++++|+.+.+
T Consensus 28 ~svi~~~~~Ig~~~~I~~siI~~~~~Ig~~~~i~~siig~~~~ 70 (104)
T cd04651 28 NSVLFRGVRVGSGSVVEDSVIMPNVGIGRNAVIRRAIIDKNVV 70 (104)
T ss_pred eCEEeCCCEECCCCEEEEeEEcCCCEECCCCEEEeEEECCCCE
Confidence 34556666776666666 3345567788888888888877654
|
It catalyzes the first committed and rate-limiting step in starch biosynthesis in plants and glycogen biosynthesis in bacteria. It is the enzymatic site for regulation of storage polysaccharide accumulation in plants and bacteria. The enzyme is a homotetramer, with each subunit containing an N-terminal catalytic domain that resembles a dinucleotide-binding Rossmann fold and a C-terminal LbH fold domain with at 5 turns, each containing three imperfect tandem repeats of a hexapeptide repeat motif (X-[STAV]-X-[LIV]-[GAED]-X). The LbH domain is involved in cooperative allosteric regulation and oligomerization. |
| >COG1861 SpsF Spore coat polysaccharide biosynthesis protein F, CMP-KDO synthetase homolog [Cell envelope biogenesis, outer membrane] | Back alignment and domain information |
|---|
Probab=90.04 E-value=1 Score=43.52 Aligned_cols=61 Identities=13% Similarity=0.239 Sum_probs=42.7
Q ss_pred ceeEEEEcCCCCCcCCCCC--CccccccCCCCchHHHHHHHHHHhhhhcCCcccEEEecCCCCh-HHHHHHHHH
Q 012172 79 KLVVLKLNGGLGTTMGCTG--PKSVIEVRNGLTFLDLIVIQIENLNAKYGCNVPLLLMNSFNTH-DDTSKIIEK 149 (469)
Q Consensus 79 k~avviLAGG~GTRmg~~~--PK~l~~v~~gks~L~~~~~~i~~l~~~~~~~iplviMtS~~t~-e~t~~~~~~ 149 (469)
++++|+=| ||||+. =|+|.|+ .++||+++++++++..... =-+|+-||.... +.+.++..+
T Consensus 3 ~I~~IiQA-----RmgStRLpgKvLlpL-~~~pmI~~~lervrks~~~----d~ivvATS~~~~d~~l~~~~~~ 66 (241)
T COG1861 3 MILVIIQA-----RMGSTRLPGKVLLPL-GGEPMIEYQLERVRKSKDL----DKIVVATSDKEEDDALEEVCRS 66 (241)
T ss_pred cEEEEeee-----cccCccCCcchhhhc-CCCchHHHHHHHHhccccc----cceEEEecCCcchhHHHHHHHH
Confidence 44555544 888865 4889999 9999999999999876521 357788888333 344556555
|
|
| >TIGR01852 lipid_A_lpxA acyl-[acyl-carrier-protein]--UDP-N-acetylglucosamine O-acyltransferase | Back alignment and domain information |
|---|
Probab=90.03 E-value=0.48 Score=46.63 Aligned_cols=17 Identities=35% Similarity=0.481 Sum_probs=12.5
Q ss_pred eEEECCCcEEeeeEEEE
Q 012172 427 DVWFGANITLKGKVTIA 443 (469)
Q Consensus 427 ~v~fg~~V~i~g~~~I~ 443 (469)
.+.+|+++.|+.+|+|.
T Consensus 76 ~v~IG~~~~I~~~~~I~ 92 (254)
T TIGR01852 76 ELIIGDNNTIREFVTIN 92 (254)
T ss_pred eEEECCCCEECCCCEEC
Confidence 57777777777777776
|
This model describes LpxA, an enzyme for the biosynthesis of lipid A, a component oflipopolysaccharide (LPS) in the outer membrane outer leaflet of most Gram-negative bacteria. Some differences are found between lipid A of different species, but this protein represents the first step (from UDP-N-acetyl-D-glucosamine) and appears to be conserved in function. Proteins from this family contain many copies of the bacterial transferase hexapeptide repeat (pfam00132). |
| >PRK14355 glmU bifunctional N-acetylglucosamine-1-phosphate uridyltransferase/glucosamine-1-phosphate acetyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=90.02 E-value=0.34 Score=51.75 Aligned_cols=50 Identities=22% Similarity=0.326 Sum_probs=39.8
Q ss_pred CceEEEeeEEECCCcEEeeeEEEE--ecCCCceeeCCCCeeecceecCCCCC
Q 012172 420 DSLKVTGDVWFGANITLKGKVTIA--AKSGEKLEIPDGAVLENKEINGPGDL 469 (469)
Q Consensus 420 ~~l~v~G~v~fg~~V~i~g~~~I~--~~~~~~~~I~~~s~le~~~v~~~~~~ 469 (469)
....|.++|.+|+++.|..+|+|. +..|+.+.|.++++|++++|+.+..|
T Consensus 261 ~~~~i~~~v~ig~~~~I~~~~~I~~~~~Ig~~~~I~~~~~I~~~~Ig~~~~I 312 (459)
T PRK14355 261 ETTYIDRGVVIGRDTTIYPGVCISGDTRIGEGCTIEQGVVIKGCRIGDDVTV 312 (459)
T ss_pred CceEECCCeEEcCCCEEeCCcEEeCCCEECCCCEECCCCEEeCCEEcCCCEE
Confidence 345677888888888888888887 44678889999999999998877653
|
|
| >KOG4042 consensus Dynactin subunit p27/WS-3, involved in transport of organelles along microtubules [Intracellular trafficking, secretion, and vesicular transport; Cytoskeleton] | Back alignment and domain information |
|---|
Probab=89.98 E-value=0.29 Score=44.22 Aligned_cols=51 Identities=18% Similarity=0.223 Sum_probs=42.6
Q ss_pred ccccCCcccccCceEEEeeEEECCCcEEeeeEEEEecCCCceeeCCCCeeec
Q 012172 409 RFKSIPSIIELDSLKVTGDVWFGANITLKGKVTIAAKSGEKLEIPDGAVLEN 460 (469)
Q Consensus 409 ~i~~~p~~~~~~~l~v~G~v~fg~~V~i~g~~~I~~~~~~~~~I~~~s~le~ 460 (469)
+++-.|+-+-|..-.|.|||+|++++++-+.+++.++. .++.|..+.+||.
T Consensus 8 svkIap~AvVCvEs~irGdvti~~gcVvHP~a~~iA~a-GPI~iGEnniiEE 58 (190)
T KOG4042|consen 8 SVKIAPSAVVCVESDIRGDVTIKEGCVVHPFAVFIATA-GPIYIGENNIIEE 58 (190)
T ss_pred eeeecCceEEEEecccccceEecCCcEecceEEEEccc-CCEEEccCchhhh
Confidence 34445666667888899999999999999999999776 4688999999987
|
|
| >PLN02472 uncharacterized protein | Back alignment and domain information |
|---|
Probab=89.75 E-value=0.43 Score=46.99 Aligned_cols=49 Identities=12% Similarity=0.128 Sum_probs=34.1
Q ss_pred ceEEEee---EEECCCcEEeeeEEEE------------ecCCCceeeCCCCeeecceecCCCCC
Q 012172 421 SLKVTGD---VWFGANITLKGKVTIA------------AKSGEKLEIPDGAVLENKEINGPGDL 469 (469)
Q Consensus 421 ~l~v~G~---v~fg~~V~i~g~~~I~------------~~~~~~~~I~~~s~le~~~v~~~~~~ 469 (469)
+.+|.|+ +++|+++.|+.+|+|. ...++.+.|.++++|++++|+.+..|
T Consensus 89 gavirgd~~~I~IG~~t~Ig~~~vI~~~~~~~~~i~~~tvIG~~v~IG~~s~L~~~~Igd~v~I 152 (246)
T PLN02472 89 GAVLRGDLNKITVGFCSNVQERCVLHAAWNSPTGLPAETLIDRYVTIGAYSLLRSCTIEPECII 152 (246)
T ss_pred CCEEecCCcceEECCCCEECCCCEEeecCccccCCCCCcEECCCCEECCCcEECCeEEcCCCEE
Confidence 4566665 7777777777777775 23455677888888888888776543
|
|
| >COG1208 GCD1 Nucleoside-diphosphate-sugar pyrophosphorylase involved in lipopolysaccharide biosynthesis/translation initiation factor 2B, gamma/epsilon subunits (eIF-2Bgamma/eIF-2Bepsilon) [Cell envelope biogenesis, outer membrane / Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=89.73 E-value=0.27 Score=51.05 Aligned_cols=48 Identities=21% Similarity=0.251 Sum_probs=43.1
Q ss_pred eEEEeeEEECCCcEEeeeEEEE--ecCCCceeeCCCCeeecceecCCCCC
Q 012172 422 LKVTGDVWFGANITLKGKVTIA--AKSGEKLEIPDGAVLENKEINGPGDL 469 (469)
Q Consensus 422 l~v~G~v~fg~~V~i~g~~~I~--~~~~~~~~I~~~s~le~~~v~~~~~~ 469 (469)
..++|++++|++++|++++.|. +..|+.+.|++++.|++++|..+++|
T Consensus 256 ~~i~gp~~ig~~~~i~~~~~i~~~~~ig~~~~I~~~~~i~~Sii~~~~~i 305 (358)
T COG1208 256 AYIIGPVVIGPGAKIGPGALIGPYTVIGEGVTIGNGVEIKNSIIMDNVVI 305 (358)
T ss_pred ceEeCCEEECCCCEECCCCEECCCcEECCCCEECCCcEEEeeEEEcCCEE
Confidence 7899999999999999999998 56888899999999999999888764
|
|
| >cd03351 LbH_UDP-GlcNAc_AT UDP-N-acetylglucosamine O-acyltransferase (UDP-GlcNAc acyltransferase): Proteins in this family catalyze the transfer of (R)-3-hydroxymyristic acid from its acyl carrier protein thioester to UDP-GlcNAc | Back alignment and domain information |
|---|
Probab=89.69 E-value=0.62 Score=45.83 Aligned_cols=41 Identities=20% Similarity=0.131 Sum_probs=22.4
Q ss_pred eEEECCCcEEeeeEEEEe---------cCCCceeeCCCCee-ecceecCCC
Q 012172 427 DVWFGANITLKGKVTIAA---------KSGEKLEIPDGAVL-ENKEINGPG 467 (469)
Q Consensus 427 ~v~fg~~V~i~g~~~I~~---------~~~~~~~I~~~s~l-e~~~v~~~~ 467 (469)
.+.+|++++|+.+|+|.. ..|+.+.|.++++| .+++|+.+.
T Consensus 77 ~v~IG~~~~Ig~~~~I~~~~~~~~~~~~IG~~~~I~~~~~I~~~~~IG~~~ 127 (254)
T cd03351 77 RLEIGDNNTIREFVTIHRGTAQGGGVTRIGNNNLLMAYVHVAHDCVIGNNV 127 (254)
T ss_pred eEEECCCCEECCccEEeccccCCCCceEECCCCEECCCCEECCCCEECCCc
Confidence 566777777777777652 12333444444444 555555543
|
It is the first enzyme in the lipid A biosynthetic pathway and is also referred to as LpxA. Lipid A is essential for the growth of Escherichia coli and related bacteria. It is also essential for maintaining the integrity of the outer membrane. UDP-GlcNAc acyltransferase is a homotrimer of left-handed parallel beta helix (LbH) subunits. Each subunit contains an N-terminal LbH region with 9 turns, each containing three imperfect tandem repeats of a hexapeptide repeat motif (X-[STAV]-X-[LIV]-[GAED]-X), and a C-terminal alpha-helical region. |
| >PRK14353 glmU bifunctional N-acetylglucosamine-1-phosphate uridyltransferase/glucosamine-1-phosphate acetyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=89.59 E-value=0.29 Score=51.93 Aligned_cols=39 Identities=13% Similarity=0.176 Sum_probs=18.5
Q ss_pred EEECCCcEEeeeEEEE--ecCCCceeeCCCCeeecceecCC
Q 012172 428 VWFGANITLKGKVTIA--AKSGEKLEIPDGAVLENKEINGP 466 (469)
Q Consensus 428 v~fg~~V~i~g~~~I~--~~~~~~~~I~~~s~le~~~v~~~ 466 (469)
+.+|++++|+.+++|. +..|+.+.|.+++++.++.|+.+
T Consensus 304 ~~Ig~~~~Ig~~~~i~~~~~ig~~~~Ig~~~~i~~~~i~~~ 344 (446)
T PRK14353 304 AHVGEGAEVGPYARLRPGAELGEGAKVGNFVEVKNAKLGEG 344 (446)
T ss_pred cEECCCcEECCCeEEeccceecCCeEEcCceEEeceEECCC
Confidence 3444444444444443 33444455555555555555443
|
|
| >COG0663 PaaY Carbonic anhydrases/acetyltransferases, isoleucine patch superfamily [General function prediction only] | Back alignment and domain information |
|---|
Probab=89.50 E-value=0.71 Score=42.99 Aligned_cols=38 Identities=24% Similarity=0.341 Sum_probs=27.4
Q ss_pred CceEEEeeEEECCCcEEeeeEEEEecCCCceeeCCCCee
Q 012172 420 DSLKVTGDVWFGANITLKGKVTIAAKSGEKLEIPDGAVL 458 (469)
Q Consensus 420 ~~l~v~G~v~fg~~V~i~g~~~I~~~~~~~~~I~~~s~l 458 (469)
.+.+|-|||.+|++|.|..+++|+++. +++.|..+|.|
T Consensus 22 ~~A~viGdV~Ig~~vsIw~~aVlRgD~-~~I~IG~~tNI 59 (176)
T COG0663 22 PSATVIGDVRIGAGVSIWPGAVLRGDV-EPIRIGARTNI 59 (176)
T ss_pred CCCEEEEeEEECCCCEECCceEEEccC-CceEECCCcee
Confidence 567777888888888888777777665 55666666665
|
|
| >cd04651 LbH_G1P_AT_C Glucose-1-phosphate adenylyltransferase, C-terminal Left-handed parallel beta helix (LbH) domain: Glucose-1-phosphate adenylyltransferase is also known as ADP-glucose synthase or ADP-glucose pyrophosphorylase | Back alignment and domain information |
|---|
Probab=89.27 E-value=0.32 Score=41.06 Aligned_cols=33 Identities=21% Similarity=0.350 Sum_probs=15.8
Q ss_pred EECCCcEEeeeEEEEec-CCCceeeCCCCeeecc
Q 012172 429 WFGANITLKGKVTIAAK-SGEKLEIPDGAVLENK 461 (469)
Q Consensus 429 ~fg~~V~i~g~~~I~~~-~~~~~~I~~~s~le~~ 461 (469)
.+++++.|+.++.|.++ .++.+.|++++++++.
T Consensus 47 iI~~~~~Ig~~~~i~~siig~~~~Ig~~~~v~~~ 80 (104)
T cd04651 47 VIMPNVGIGRNAVIRRAIIDKNVVIPDGVVIGGD 80 (104)
T ss_pred EEcCCCEECCCCEEEeEEECCCCEECCCCEECCC
Confidence 34455555555555422 3344555555555443
|
It catalyzes the first committed and rate-limiting step in starch biosynthesis in plants and glycogen biosynthesis in bacteria. It is the enzymatic site for regulation of storage polysaccharide accumulation in plants and bacteria. The enzyme is a homotetramer, with each subunit containing an N-terminal catalytic domain that resembles a dinucleotide-binding Rossmann fold and a C-terminal LbH fold domain with at 5 turns, each containing three imperfect tandem repeats of a hexapeptide repeat motif (X-[STAV]-X-[LIV]-[GAED]-X). The LbH domain is involved in cooperative allosteric regulation and oligomerization. |
| >PLN02694 serine O-acetyltransferase | Back alignment and domain information |
|---|
Probab=89.18 E-value=0.52 Score=47.46 Aligned_cols=30 Identities=30% Similarity=0.425 Sum_probs=11.8
Q ss_pred EECCCcEEeeeEEEE--ecCCCceeeCCCCee
Q 012172 429 WFGANITLKGKVTIA--AKSGEKLEIPDGAVL 458 (469)
Q Consensus 429 ~fg~~V~i~g~~~I~--~~~~~~~~I~~~s~l 458 (469)
++|++|.|+.+++|. ...|+.+.|.++|++
T Consensus 214 iIGd~V~IGagA~Ilggi~IGd~a~IGAgSVV 245 (294)
T PLN02694 214 KIGDGVLIGAGATILGNVKIGEGAKIGAGSVV 245 (294)
T ss_pred EECCCeEECCeeEECCCCEECCCCEECCCCEE
Confidence 334444444443332 223344444444444
|
|
| >TIGR01173 glmU UDP-N-acetylglucosamine diphosphorylase/glucosamine-1-phosphate N-acetyltransferase | Back alignment and domain information |
|---|
Probab=89.13 E-value=0.41 Score=50.64 Aligned_cols=50 Identities=22% Similarity=0.407 Sum_probs=35.9
Q ss_pred CceEEEeeEEECCCcEEeeeEEEE--ecCCCceeeCCCCeeecceecCCCCC
Q 012172 420 DSLKVTGDVWFGANITLKGKVTIA--AKSGEKLEIPDGAVLENKEINGPGDL 469 (469)
Q Consensus 420 ~~l~v~G~v~fg~~V~i~g~~~I~--~~~~~~~~I~~~s~le~~~v~~~~~~ 469 (469)
..+.+.+.+.+|+++.|..+++|. +..|..+.|.++++|.+++|+.+++|
T Consensus 254 ~~~~i~~~~~ig~~~~i~~~~~i~~~~~ig~~~~I~~~~~i~~~~i~~~~~I 305 (451)
T TIGR01173 254 ARFDIRGTVEIGRDVEIDPNVILEGKVKIGDDVVIGPGCVIKNSVIGSNVVI 305 (451)
T ss_pred CeEEECCccEECCCCEEcCCeEEeCceEECCCCEECCCcEEeeeEecCCCEE
Confidence 345567777777777777777776 44677777888888888777776653
|
This protein is a bifunctional enzyme, GlmU, which catalyzes last two reactions in the four-step pathway of UDP-N-acetylglucosamine biosynthesis from fructose-6-phosphate. Its reaction product is required from peptidoglycan biosynthesis, LPS biosynthesis in species with LPS, and certain other processes. |
| >PRK11132 cysE serine acetyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=88.79 E-value=0.6 Score=46.66 Aligned_cols=22 Identities=9% Similarity=0.237 Sum_probs=10.1
Q ss_pred eEEEeeEEECCCcEEeeeEEEE
Q 012172 422 LKVTGDVWFGANITLKGKVTIA 443 (469)
Q Consensus 422 l~v~G~v~fg~~V~i~g~~~I~ 443 (469)
++|..++.+|++|+|..+|+|-
T Consensus 162 ivIG~~a~IGdnv~I~~~VtiG 183 (273)
T PRK11132 162 IVIGETAVIENDVSILQSVTLG 183 (273)
T ss_pred eEECCCCEECCCCEEcCCcEEe
Confidence 3444444444444444444443
|
|
| >KOG1461 consensus Translation initiation factor 2B, epsilon subunit (eIF-2Bepsilon/GCD6) [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=88.71 E-value=0.38 Score=52.51 Aligned_cols=38 Identities=21% Similarity=0.437 Sum_probs=19.8
Q ss_pred CceEEEeeEEECCCcEEeeeEEEE-ecCCCceeeCCCCee
Q 012172 420 DSLKVTGDVWFGANITLKGKVTIA-AKSGEKLEIPDGAVL 458 (469)
Q Consensus 420 ~~l~v~G~v~fg~~V~i~g~~~I~-~~~~~~~~I~~~s~l 458 (469)
+++.|.+. ++|.||+|+++|.|. |-.++.+.|+++++|
T Consensus 361 sN~~I~~S-~iw~~v~Igdnc~I~~aii~d~v~i~~~~~l 399 (673)
T KOG1461|consen 361 SNVRIKNS-FIWNNVTIGDNCRIDHAIICDDVKIGEGAIL 399 (673)
T ss_pred CceEEeee-eeecCcEECCCceEeeeEeecCcEeCCCccc
Confidence 44444443 456666666666666 333444555555444
|
|
| >TIGR01172 cysE serine O-acetyltransferase | Back alignment and domain information |
|---|
Probab=88.62 E-value=0.6 Score=42.82 Aligned_cols=21 Identities=19% Similarity=0.311 Sum_probs=8.8
Q ss_pred EEEeeEEECCCcEEeeeEEEE
Q 012172 423 KVTGDVWFGANITLKGKVTIA 443 (469)
Q Consensus 423 ~v~G~v~fg~~V~i~g~~~I~ 443 (469)
+|.+++.+|+||+|..+|.|.
T Consensus 83 ~Ig~~~~IG~~~~I~~~v~ig 103 (162)
T TIGR01172 83 VIGETAVIGDDVTIYHGVTLG 103 (162)
T ss_pred EECCCCEECCCCEEcCCCEEC
Confidence 333334444444444444443
|
Cysteine biosynthesis |
| >PLN02357 serine acetyltransferase | Back alignment and domain information |
|---|
Probab=88.37 E-value=0.62 Score=48.21 Aligned_cols=33 Identities=21% Similarity=0.277 Sum_probs=19.9
Q ss_pred EEECCCcEEeeeEEEE--ecCCCceeeCCCCeeec
Q 012172 428 VWFGANITLKGKVTIA--AKSGEKLEIPDGAVLEN 460 (469)
Q Consensus 428 v~fg~~V~i~g~~~I~--~~~~~~~~I~~~s~le~ 460 (469)
+.+|++|.|+.++.|. ...|+.+.|.++|++..
T Consensus 279 piIGd~V~IGagA~IlggV~IGdga~IGAgSVV~~ 313 (360)
T PLN02357 279 PKIGDGVLIGAGTCILGNITIGEGAKIGAGSVVLK 313 (360)
T ss_pred ceeCCCeEECCceEEECCeEECCCCEECCCCEECc
Confidence 5566666666665554 23566666777776654
|
|
| >cd03358 LbH_WxcM_N_like WcxM-like, Left-handed parallel beta-Helix (LbH) N-terminal domain: This group is composed of Xanthomonas campestris WcxM and proteins with similarity to the WcxM N-terminal domain | Back alignment and domain information |
|---|
Probab=88.35 E-value=0.49 Score=40.25 Aligned_cols=24 Identities=8% Similarity=0.177 Sum_probs=16.8
Q ss_pred CceEEEeeEEECCCcEEeeeEEEE
Q 012172 420 DSLKVTGDVWFGANITLKGKVTIA 443 (469)
Q Consensus 420 ~~l~v~G~v~fg~~V~i~g~~~I~ 443 (469)
.+..+.+++++|+++.|..+++|.
T Consensus 27 ~~~~i~~~~~Ig~~~~I~~~~~i~ 50 (119)
T cd03358 27 SNVSIYEGVTIEDDVFIGPNVVFT 50 (119)
T ss_pred CCcEEeCCeEECCCcEEcCCeEEe
Confidence 455566677777777777777765
|
WcxM is thought to be bifunctional, catalyzing both the isomerization and transacetylation reactions of keto-hexoses. It contains an N-terminal LbH domain responsible for the transacetylation function and a C-terminal isomerase domain. The LbH domain contains imperfect tandem repeats of a hexapeptide repeat motif (X-[STAV]-X-[LIV]-[GAED]-X), typical of enzymes with acyltransferase activity. |
| >TIGR01208 rmlA_long glucose-1-phosphate thymidylylransferase, long form | Back alignment and domain information |
|---|
Probab=88.35 E-value=0.69 Score=47.52 Aligned_cols=41 Identities=15% Similarity=0.110 Sum_probs=25.6
Q ss_pred eeEEECCCcEEeee-EEEE-ecCCCceeeCCCCeeec---ceecCC
Q 012172 426 GDVWFGANITLKGK-VTIA-AKSGEKLEIPDGAVLEN---KEINGP 466 (469)
Q Consensus 426 G~v~fg~~V~i~g~-~~I~-~~~~~~~~I~~~s~le~---~~v~~~ 466 (469)
.+++++++++|.++ +.|. +..++.+.|++++.+++ .++|.+
T Consensus 303 ~~s~i~~~~~i~~~~~~~~~~ii~~~~~i~~~~~~~~~~~~~~g~~ 348 (353)
T TIGR01208 303 EHSIVLDESVIEGVQARIVDSVIGKKVRIKGNRRRPGDLRLTIGDY 348 (353)
T ss_pred EeeEEcCCCEEcCCcceeecCEEcCCCEECCCcccccccceEEcCC
Confidence 37777888888766 3554 33455577777777753 345443
|
Alternate name: dTDP-D-glucose synthase |
| >cd03358 LbH_WxcM_N_like WcxM-like, Left-handed parallel beta-Helix (LbH) N-terminal domain: This group is composed of Xanthomonas campestris WcxM and proteins with similarity to the WcxM N-terminal domain | Back alignment and domain information |
|---|
Probab=88.13 E-value=0.95 Score=38.46 Aligned_cols=11 Identities=0% Similarity=0.081 Sum_probs=4.1
Q ss_pred ECCCcEEeeeE
Q 012172 430 FGANITLKGKV 440 (469)
Q Consensus 430 fg~~V~i~g~~ 440 (469)
+|+++.|+.++
T Consensus 70 Ig~~~~Ig~~~ 80 (119)
T cd03358 70 VKRGASIGANA 80 (119)
T ss_pred ECCCcEECcCC
Confidence 33333333333
|
WcxM is thought to be bifunctional, catalyzing both the isomerization and transacetylation reactions of keto-hexoses. It contains an N-terminal LbH domain responsible for the transacetylation function and a C-terminal isomerase domain. The LbH domain contains imperfect tandem repeats of a hexapeptide repeat motif (X-[STAV]-X-[LIV]-[GAED]-X), typical of enzymes with acyltransferase activity. |
| >PRK12461 UDP-N-acetylglucosamine acyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=87.98 E-value=0.55 Score=46.45 Aligned_cols=24 Identities=13% Similarity=0.219 Sum_probs=17.0
Q ss_pred CceEEEeeEEECCCcEEeeeEEEE
Q 012172 420 DSLKVTGDVWFGANITLKGKVTIA 443 (469)
Q Consensus 420 ~~l~v~G~v~fg~~V~i~g~~~I~ 443 (469)
++++|.|++++|++++|..+++|-
T Consensus 40 ~~~~I~~~~~IG~~~~I~~~a~Ig 63 (255)
T PRK12461 40 PHAVILGPTRIGKNNKIHQGAVVG 63 (255)
T ss_pred cCCEEeCCCEECCCCEEccCcEeC
Confidence 566777777777777777777664
|
|
| >PF07959 Fucokinase: L-fucokinase; InterPro: IPR012887 In the salvage pathway of GDP-L-fucose, free cytosolic fucose is phosphorylated by L-fucokinase to form L-fucose-L-phosphate, which is then further converted to GDP-L-fucose in the reaction catalysed by GDP-L-fucose pyrophosphorylase [] | Back alignment and domain information |
|---|
Probab=87.85 E-value=5.3 Score=42.38 Aligned_cols=19 Identities=16% Similarity=0.338 Sum_probs=16.5
Q ss_pred EEEEeEEEeHHHHHHHHHh
Q 012172 292 FNTNNLWVNLKAIKRLVEA 310 (469)
Q Consensus 292 ~Nt~~~~~~l~~L~~~l~~ 310 (469)
-.+|+++++-++.++++..
T Consensus 141 ldsG~~~~s~~~~e~L~~~ 159 (414)
T PF07959_consen 141 LDSGIVFFSSKAVESLLYL 159 (414)
T ss_pred ccccceeccHHHHHHHHHh
Confidence 3889999999999998875
|
; GO: 0016772 transferase activity, transferring phosphorus-containing groups |
| >TIGR03308 phn_thr-fam phosphonate metabolim protein, transferase hexapeptide repeat family | Back alignment and domain information |
|---|
Probab=87.78 E-value=0.65 Score=44.36 Aligned_cols=48 Identities=8% Similarity=0.069 Sum_probs=33.2
Q ss_pred CceEEEeeEEECCCcEEeeeEEEE-ecCCCceeeCCCCeeecceecCCCC
Q 012172 420 DSLKVTGDVWFGANITLKGKVTIA-AKSGEKLEIPDGAVLENKEINGPGD 468 (469)
Q Consensus 420 ~~l~v~G~v~fg~~V~i~g~~~I~-~~~~~~~~I~~~s~le~~~v~~~~~ 468 (469)
.+..|+ ++.+|++++|+.+|+|. ...|+.+.|.+++++.++.|+.++.
T Consensus 13 ~~a~i~-~~~IG~~~~Ig~~a~I~~s~IG~~s~I~~~~~i~~~~IG~~~~ 61 (204)
T TIGR03308 13 PTAELT-ESKLGRYTEIGERTRLREVALGDYSYVMRDCDIIYTTIGKFCS 61 (204)
T ss_pred CCcEEe-ccEeCCCcEECCCcEEeCCEECCCCEECCCcEEeeeEECCCCE
Confidence 345554 36788888888888877 3456667777887777777776654
|
This family of proteins contains copies of the Bacterial transferase hexapeptide repeat family (pfam00132) and is only found in operons encoding the phosphonate C-P lyase system (GenProp0232). Many C-P lyase operons, however, lack a homolog of this protein. |
| >cd05635 LbH_unknown Uncharacterized proteins, Left-handed parallel beta-Helix (LbH) domain: Members in this group are uncharacterized bacterial proteins containing a LbH domain with multiple turns, each containing three imperfect tandem repeats of a hexapeptide repeat motif (X-[STAV]-X-[LIV]-[GAED]-X) | Back alignment and domain information |
|---|
Probab=87.70 E-value=1.1 Score=37.84 Aligned_cols=23 Identities=22% Similarity=0.278 Sum_probs=14.1
Q ss_pred ceEEEeeEEECCCcEEeeeEEEE
Q 012172 421 SLKVTGDVWFGANITLKGKVTIA 443 (469)
Q Consensus 421 ~l~v~G~v~fg~~V~i~g~~~I~ 443 (469)
...+.|.+++|+++.|+.++.|.
T Consensus 23 ~~~i~g~v~IG~~~~Ig~~~~I~ 45 (101)
T cd05635 23 FAVIEGPVYIGPGSRVKMGARIY 45 (101)
T ss_pred CCEEeCCCEECCCCEECCCCEEe
Confidence 44556666666666666666555
|
Proteins containing hexapeptide repeats are often enzymes showing acyltransferase activity. |
| >PRK14354 glmU bifunctional N-acetylglucosamine-1-phosphate uridyltransferase/glucosamine-1-phosphate acetyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=87.65 E-value=0.59 Score=49.66 Aligned_cols=48 Identities=17% Similarity=0.236 Sum_probs=28.0
Q ss_pred CceEEEeeEEECCCcEEeeeEEEE-----------------ecCCCceeeCCCCeee-cceecCCC
Q 012172 420 DSLKVTGDVWFGANITLKGKVTIA-----------------AKSGEKLEIPDGAVLE-NKEINGPG 467 (469)
Q Consensus 420 ~~l~v~G~v~fg~~V~i~g~~~I~-----------------~~~~~~~~I~~~s~le-~~~v~~~~ 467 (469)
.+++|.|++++|+++.|..+++|. +..+..+.|.++++|. +++|+.+.
T Consensus 276 ~~~~i~~~~~Ig~~~~I~~~~~i~~~~ig~~~~I~~~~i~~~~ig~~~~Ig~~~~i~~~~~Ig~~~ 341 (458)
T PRK14354 276 PGVVIKGNTVIGEDCVIGPGSRIVDSTIGDGVTITNSVIEESKVGDNVTVGPFAHLRPGSVIGEEV 341 (458)
T ss_pred CCeEEecceEECCCCEECCCcEEeccEECCCCEEEEEEEeCCEECCCcEECCceEecCCCEEeCCc
Confidence 556666777777777776666654 2334445555555555 45555544
|
|
| >PRK05289 UDP-N-acetylglucosamine acyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=87.45 E-value=0.75 Score=45.59 Aligned_cols=40 Identities=18% Similarity=0.150 Sum_probs=22.5
Q ss_pred eEEECCCcEEeeeEEEEec---------CCCceeeCCCCeee-cceecCC
Q 012172 427 DVWFGANITLKGKVTIAAK---------SGEKLEIPDGAVLE-NKEINGP 466 (469)
Q Consensus 427 ~v~fg~~V~i~g~~~I~~~---------~~~~~~I~~~s~le-~~~v~~~ 466 (469)
.+.+|+++.|+.+|+|... .|+.+.|.++++|. +++|+.+
T Consensus 80 ~v~IG~~~~I~e~~~I~~~~~~~~~~t~IG~~~~I~~~~~I~h~~~IG~~ 129 (262)
T PRK05289 80 RLVIGDNNTIREFVTINRGTVQGGGVTRIGDNNLLMAYVHVAHDCVVGNH 129 (262)
T ss_pred eEEECCCCEECCCeEEecccccCCCeeEECCceEECCCCEECCeEEECCC
Confidence 4667777777777777632 34444455555553 4555443
|
|
| >PRK00892 lpxD UDP-3-O-[3-hydroxymyristoyl] glucosamine N-acyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=87.38 E-value=0.66 Score=47.81 Aligned_cols=40 Identities=30% Similarity=0.434 Sum_probs=25.6
Q ss_pred CceEEEeeEEECCCcEEeeeEEEE--ecCCCceeeCCCCeee
Q 012172 420 DSLKVTGDVWFGANITLKGKVTIA--AKSGEKLEIPDGAVLE 459 (469)
Q Consensus 420 ~~l~v~G~v~fg~~V~i~g~~~I~--~~~~~~~~I~~~s~le 459 (469)
.+++|.+++++|+++.|..+|+|. ...++.+.|.++++|.
T Consensus 141 ~~~~I~~~~~IG~~~~I~~~~~I~~~~~Ig~~~~I~~~~~Ig 182 (343)
T PRK00892 141 AGAVIGDGVKIGADCRLHANVTIYHAVRIGNRVIIHSGAVIG 182 (343)
T ss_pred CCCEEcCCcEECCCCEeCCCeEEcCCCEECCCCEECCCCEEe
Confidence 455566666666777776666665 2256666777777774
|
|
| >cd03356 LbH_G1P_AT_C_like Left-handed parallel beta-Helix (LbH) domain of a group of proteins with similarity to glucose-1-phosphate adenylyltransferase: Included in this family are glucose-1-phosphate adenylyltransferase, mannose-1-phosphate guanylyltransferase, and the eukaryotic translation initiation factor eIF-2B subunits, epsilon and gamma | Back alignment and domain information |
|---|
Probab=86.50 E-value=0.51 Score=37.19 Aligned_cols=41 Identities=17% Similarity=0.127 Sum_probs=25.6
Q ss_pred EEECCCcEEeeeEEEEec-CCCceeeCCCCeeec-ceecCCCC
Q 012172 428 VWFGANITLKGKVTIAAK-SGEKLEIPDGAVLEN-KEINGPGD 468 (469)
Q Consensus 428 v~fg~~V~i~g~~~I~~~-~~~~~~I~~~s~le~-~~v~~~~~ 468 (469)
..+++++.|+.++.|.++ .+..+.|.+++.+.+ ++++.+.+
T Consensus 34 svi~~~~~i~~~~~i~~svv~~~~~i~~~~~i~~~~~ig~~~~ 76 (79)
T cd03356 34 SILMDNVTIGANSVIVDSIIGDNAVIGENVRVVNLCIIGDDVV 76 (79)
T ss_pred CEEeCCCEECCCCEEECCEECCCCEECCCCEEcCCeEECCCeE
Confidence 344556666666666633 445577777777777 77776544
|
Most members of this family contains an N-terminal catalytic domain that resembles a dinucleotide-binding Rossmann fold, followed by a LbH fold domain with at least 4 turns, each containing three imperfect tandem repeats of a hexapeptide repeat motif (X-[STAV]-X-[LIV]-[GAED]-X). eIF-2B epsilon contains an additional domain of unknown function at the C-terminus. Proteins containing hexapeptide repeats are often enzymes showing acyltransferase activity. |
| >PF14602 Hexapep_2: Hexapeptide repeat of succinyl-transferase; PDB: 2P2O_B 2IC7_B 2RIJ_A 3FSY_B 3FSX_D 3CJ8_A 1QRE_A 1QRG_A 1THJ_B 1QRM_A | Back alignment and domain information |
|---|
Probab=86.42 E-value=0.36 Score=32.50 Aligned_cols=31 Identities=29% Similarity=0.394 Sum_probs=12.2
Q ss_pred EEECCCcEEeeeEEEEecCCCceeeCCCCee
Q 012172 428 VWFGANITLKGKVTIAAKSGEKLEIPDGAVL 458 (469)
Q Consensus 428 v~fg~~V~i~g~~~I~~~~~~~~~I~~~s~l 458 (469)
+.+|++|.|+.++.|-...|+.+.|.++++|
T Consensus 2 v~IG~~~~ig~~~~igi~igd~~~i~~g~~I 32 (34)
T PF14602_consen 2 VTIGDNCFIGANSTIGITIGDGVIIGAGVVI 32 (34)
T ss_dssp EEE-TTEEE-TT-EETSEE-TTEEE-TTEEE
T ss_pred eEECCCEEECcccccCCEEcCCCEECCCCEE
Confidence 4556666666655542223334444444443
|
... |
| >TIGR03532 DapD_Ac 2,3,4,5-tetrahydropyridine-2,6-dicarboxylate N-acetyltransferase | Back alignment and domain information |
|---|
Probab=85.84 E-value=0.9 Score=44.26 Aligned_cols=11 Identities=9% Similarity=0.428 Sum_probs=6.3
Q ss_pred EEEeHHHHHHH
Q 012172 297 LWVNLKAIKRL 307 (469)
Q Consensus 297 ~~~~l~~L~~~ 307 (469)
+|.+.+.|.+.
T Consensus 48 yW~Di~~yl~a 58 (231)
T TIGR03532 48 EWEDIEPFIEA 58 (231)
T ss_pred eHHHHHHHHHH
Confidence 67777444433
|
Alternate name: tetrahydrodipicolinate N-acetyltransferase. Note that IUBMB lists this alternate name as the accepted name. Unfortunately, the related succinyl transferase acting on the same substrate (EC:2.3.1.117, TIGR00695) uses the opposite standard. We have decided to give these two enzymes names which more clearly indicated that they act on the same substrate. |
| >TIGR03532 DapD_Ac 2,3,4,5-tetrahydropyridine-2,6-dicarboxylate N-acetyltransferase | Back alignment and domain information |
|---|
Probab=85.83 E-value=0.63 Score=45.36 Aligned_cols=36 Identities=22% Similarity=0.340 Sum_probs=15.4
Q ss_pred EEeeEEECCCcEEeeeEEEE--ecCCCceeeCCCCeee
Q 012172 424 VTGDVWFGANITLKGKVTIA--AKSGEKLEIPDGAVLE 459 (469)
Q Consensus 424 v~G~v~fg~~V~i~g~~~I~--~~~~~~~~I~~~s~le 459 (469)
|.+++++|+++.|+.++.|. +..++.+.|.++++|.
T Consensus 113 I~~~~~IG~~~~I~~~a~I~~~s~Ig~~~~Ig~~~~I~ 150 (231)
T TIGR03532 113 INIGAEIGEGTMIDMNAVLGGRATVGKNVHIGAGAVLA 150 (231)
T ss_pred cCCCeEECCCCEEccccccCCCcEECCCcEEcCCcEEc
Confidence 33444444444444444442 2233444444444443
|
Alternate name: tetrahydrodipicolinate N-acetyltransferase. Note that IUBMB lists this alternate name as the accepted name. Unfortunately, the related succinyl transferase acting on the same substrate (EC:2.3.1.117, TIGR00695) uses the opposite standard. We have decided to give these two enzymes names which more clearly indicated that they act on the same substrate. |
| >cd05787 LbH_eIF2B_epsilon eIF-2B epsilon subunit, central Left-handed parallel beta-Helix (LbH) domain: eIF-2B is a eukaryotic translation initiator, a guanine nucleotide exchange factor (GEF) composed of five different subunits (alpha, beta, gamma, delta and epsilon) | Back alignment and domain information |
|---|
Probab=85.55 E-value=0.57 Score=36.67 Aligned_cols=48 Identities=15% Similarity=0.252 Sum_probs=34.4
Q ss_pred CceEEEeeEEECCCcEEeeeEEEE-ecCCCceeeCCCCeeecceecCCCC
Q 012172 420 DSLKVTGDVWFGANITLKGKVTIA-AKSGEKLEIPDGAVLENKEINGPGD 468 (469)
Q Consensus 420 ~~l~v~G~v~fg~~V~i~g~~~I~-~~~~~~~~I~~~s~le~~~v~~~~~ 468 (469)
..+.|. ++.+|+++.|+.+|.|. +..+..+.|.+++.|++++|+.+.+
T Consensus 10 ~~~~i~-~s~ig~~~~ig~~~~i~~s~i~~~~~i~~~~~i~~~~i~~~~~ 58 (79)
T cd05787 10 EGTTIK-NSVIGRNCKIGKNVVIDNSYIWDDVTIEDGCTIHHSIVADGAV 58 (79)
T ss_pred CCCEEe-ccEECCCCEECCCCEEeCcEEeCCCEECCCCEEeCcEEcCCCE
Confidence 344554 46777888887777776 3345668899999999888877654
|
eIF2B is important for regenerating GTP-bound eIF2 during the initiation process. This event is obligatory for eIF2 to bind initiator methionyl-tRNA, forming the ternary initiation complex. The eIF-2B epsilon subunit contains an N-terminal domain that resembles a dinucleotide-binding Rossmann fold, a central LbH domain containing 4 turns, each containing three imperfect tandem repeats of a hexapeptide repeat motif (X-[STAV]-X-[LIV]-[GAED]-X), and a C-terminal domain of unknown function that is present in eIF-4 gamma, eIF-5, and eIF-2B epsilon. The epsilon and gamma subunits form the catalytic subcomplex of eIF-2B, which binds eIF2 and catalyzes guanine nucleotide exchange. |
| >cd04646 LbH_Dynactin_6 Dynactin 6 (or subunit p27): Dynactin is a major component of the activator complex that stimulates dynein-mediated vesicle transport | Back alignment and domain information |
|---|
Probab=85.53 E-value=1.3 Score=40.64 Aligned_cols=21 Identities=29% Similarity=0.514 Sum_probs=9.5
Q ss_pred EEEeeEEECCCcEEeeeEEEE
Q 012172 423 KVTGDVWFGANITLKGKVTIA 443 (469)
Q Consensus 423 ~v~G~v~fg~~V~i~g~~~I~ 443 (469)
+|.|++++|+++.|..+|+|.
T Consensus 13 ~i~g~v~IG~~~~I~~~a~I~ 33 (164)
T cd04646 13 EIRGDVTIGPGTVVHPRATII 33 (164)
T ss_pred EEcCceEECCCCEEcCCeEEe
Confidence 344444444444444444443
|
Dynactin is a heterocomplex of at least eight subunits, including a 150,000-MW protein called Glued, the actin-capping protein Arp1, and dynamatin. In vitro binding experiments show that dynactin enhances dynein-dependent motility, possibly through interaction with microtubules and vesicles. Subunit p27 is part of the pointed-end subcomplex in dynactin that also includes p25, p26, and Arp11. This subcomplex interacts with membranous cargoes. p25 and p27 contain the imperfect tandem repeats of a hexapeptide repeat motif (X-[STAV]-X-[LIV]-[GAED]-X), indicating a left-handed parallel beta helix (LbH) structural domain. Proteins containing hexapeptide repeats are often enzymes showing acyltransferase activity. |
| >TIGR01853 lipid_A_lpxD UDP-3-O-[3-hydroxymyristoyl] glucosamine N-acyltransferase | Back alignment and domain information |
|---|
Probab=84.74 E-value=0.96 Score=46.34 Aligned_cols=49 Identities=16% Similarity=0.182 Sum_probs=34.0
Q ss_pred CceEEEeeEEECCCcEEeeeEEEE--ecCCCceeeCCCCeee-cceecCCCC
Q 012172 420 DSLKVTGDVWFGANITLKGKVTIA--AKSGEKLEIPDGAVLE-NKEINGPGD 468 (469)
Q Consensus 420 ~~l~v~G~v~fg~~V~i~g~~~I~--~~~~~~~~I~~~s~le-~~~v~~~~~ 468 (469)
..++|.+++++|++++|..+|+|. +..|+.+.|.++++|. +++|+.+.+
T Consensus 114 ~~~~I~~~v~IG~~~~I~~~~~Ig~~~~IG~~~~I~~~~~I~~~~~IG~~~~ 165 (324)
T TIGR01853 114 PNVVIGAGVEIGENVIIGPGVVIGDDVVIGDGSRIHPNVVIYERVQLGKNVI 165 (324)
T ss_pred CCcEEccCcEECCcEEECCCCEECCcceeCCCceECCCcEECCCCEECCCCE
Confidence 556677777777777777777774 4566667777777775 677766654
|
This model describes LpxD, an enzyme for the biosynthesis of lipid A, a component oflipopolysaccharide (LPS) in the outer membrane outer leaflet of most Gram-negative bacteria. Some differences are found between lipid A of different species. This protein represents the third step from UDP-N-acetyl-D-glucosamine. The group added at this step generally is 14:0(3-OH) (myristate) but may vary; in Aquifex it appears to be 16:0(3-OH) (palmitate). |
| >cd05824 LbH_M1P_guanylylT_C Mannose-1-phosphate guanylyltransferase, C-terminal Left-handed parallel beta helix (LbH) domain: Mannose-1-phosphate guanylyltransferase is also known as GDP-mannose pyrophosphorylase | Back alignment and domain information |
|---|
Probab=84.17 E-value=2 Score=34.11 Aligned_cols=47 Identities=13% Similarity=0.110 Sum_probs=30.9
Q ss_pred ceEEEeeEEECCCcEEeeeEEEEec-CCCceeeCCCCeeec-ceecCCCC
Q 012172 421 SLKVTGDVWFGANITLKGKVTIAAK-SGEKLEIPDGAVLEN-KEINGPGD 468 (469)
Q Consensus 421 ~l~v~G~v~fg~~V~i~g~~~I~~~-~~~~~~I~~~s~le~-~~v~~~~~ 468 (469)
+..|+ +..++++++|..++.|.++ .++.+.|.+++.+.+ ++|+.+.+
T Consensus 29 ~~~i~-~sii~~~~~i~~~~~i~~sii~~~~~v~~~~~~~~~~~ig~~~~ 77 (80)
T cd05824 29 GVRLQ-RCVILSNSTVRDHSWVKSSIVGWNSTVGRWTRLENVTVLGDDVT 77 (80)
T ss_pred CcEEe-eeEEcCCCEECCCCEEeCCEEeCCCEECCCcEEecCEEECCceE
Confidence 34444 4555677777777767633 456678888888887 77776654
|
It catalyzes the synthesis of GDP-mannose from GTP and mannose-1-phosphate, and is involved in the maintenance of cell wall integrity and glycosylation. Similar to ADP-glucose pyrophosphorylase, it contains an N-terminal catalytic domain that resembles a dinucleotide-binding Rossmann fold and a C-terminal LbH fold domain, presumably with 4 turns, each containing three imperfect tandem repeats of a hexapeptide repeat motif (X-[STAV]-X-[LIV]-[GAED]-X). Proteins containing hexapeptide repeats are often enzymes showing acyltransferase activity. |
| >PRK09451 glmU bifunctional N-acetylglucosamine-1-phosphate uridyltransferase/glucosamine-1-phosphate acetyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=84.15 E-value=1.8 Score=46.11 Aligned_cols=8 Identities=13% Similarity=-0.014 Sum_probs=4.0
Q ss_pred HHHHHHHH
Q 012172 302 KAIKRLVE 309 (469)
Q Consensus 302 ~~L~~~l~ 309 (469)
+.+..+++
T Consensus 200 d~i~~~i~ 207 (456)
T PRK09451 200 DIIALAHQ 207 (456)
T ss_pred HHHHHHHH
Confidence 45555554
|
|
| >COG1044 LpxD UDP-3-O-[3-hydroxymyristoyl] | Back alignment and domain information |
|---|
Probab=84.09 E-value=1.2 Score=45.65 Aligned_cols=41 Identities=24% Similarity=0.322 Sum_probs=24.2
Q ss_pred CceEEEeeEEECCCcEEeeeEEEE--ecCCCceeeCCCCeeec
Q 012172 420 DSLKVTGDVWFGANITLKGKVTIA--AKSGEKLEIPDGAVLEN 460 (469)
Q Consensus 420 ~~l~v~G~v~fg~~V~i~g~~~I~--~~~~~~~~I~~~s~le~ 460 (469)
..++|..+|.+|+++.|.++|+|. +..|+++.|.+|++|..
T Consensus 140 ~~~vIg~~~~IG~~~~i~~~v~I~~~~~IG~~v~I~~GavIG~ 182 (338)
T COG1044 140 AGAVIGENVKIGDGTVIHPNVTIYHNVVIGNNVIIHSGAVIGA 182 (338)
T ss_pred CCCEECCCcEECCCcEEcCCCEEecCcEECCceEECCCCEEcc
Confidence 344555555555555556666665 44666666777666643
|
|
| >PRK11830 dapD 2,3,4,5-tetrahydropyridine-2,6-carboxylate N-succinyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=83.83 E-value=6.9 Score=39.16 Aligned_cols=24 Identities=8% Similarity=0.104 Sum_probs=15.7
Q ss_pred CceEEEeeEEECCCcEEeeeEEEE
Q 012172 420 DSLKVTGDVWFGANITLKGKVTIA 443 (469)
Q Consensus 420 ~~l~v~G~v~fg~~V~i~g~~~I~ 443 (469)
..+.|.|.+++++++.|+.+++|.
T Consensus 102 ~~~rI~p~a~V~~ga~Ig~gavI~ 125 (272)
T PRK11830 102 AGVRVVPGAVVRRGAYIAPNVVLM 125 (272)
T ss_pred CCcEEcCCeEECCCCEECCCcEEE
Confidence 556666666666666666666555
|
|
| >KOG1462 consensus Translation initiation factor 2B, gamma subunit (eIF-2Bgamma/GCD1) [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=83.62 E-value=1.5 Score=45.59 Aligned_cols=47 Identities=23% Similarity=0.261 Sum_probs=27.2
Q ss_pred ceEEEeeEEECCCcEEeeeEEEEec-CCCceeeCCCCeeecceecCCCC
Q 012172 421 SLKVTGDVWFGANITLKGKVTIAAK-SGEKLEIPDGAVLENKEINGPGD 468 (469)
Q Consensus 421 ~l~v~G~v~fg~~V~i~g~~~I~~~-~~~~~~I~~~s~le~~~v~~~~~ 468 (469)
.++|.+...+ +||+|+.+|.|.++ .|....|.++|.|-||.|+.+-+
T Consensus 363 ~~~v~nSilm-~nV~vg~G~~IensIIg~gA~Ig~gs~L~nC~Ig~~yv 410 (433)
T KOG1462|consen 363 RVKVANSILM-DNVVVGDGVNIENSIIGMGAQIGSGSKLKNCIIGPGYV 410 (433)
T ss_pred CcEEEeeEee-cCcEecCCcceecceecccceecCCCeeeeeEecCCcE
Confidence 3444444333 56666666666644 34446677777777777776543
|
|
| >PRK00892 lpxD UDP-3-O-[3-hydroxymyristoyl] glucosamine N-acyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=83.45 E-value=1.4 Score=45.40 Aligned_cols=18 Identities=28% Similarity=0.549 Sum_probs=9.5
Q ss_pred eeEEECCCcEEeeeEEEE
Q 012172 426 GDVWFGANITLKGKVTIA 443 (469)
Q Consensus 426 G~v~fg~~V~i~g~~~I~ 443 (469)
|.|.+|++|.|+.+++|.
T Consensus 202 g~v~Ig~~v~IGa~~~I~ 219 (343)
T PRK00892 202 GRVIIGDDVEIGANTTID 219 (343)
T ss_pred ccEEECCCcEECCCcEEe
Confidence 345555555555555553
|
|
| >PRK09527 lacA galactoside O-acetyltransferase; Reviewed | Back alignment and domain information |
|---|
Probab=83.44 E-value=3 Score=39.86 Aligned_cols=32 Identities=25% Similarity=0.413 Sum_probs=15.7
Q ss_pred EEECCCcEEeeeEEEE--ecCCCceeeCCCCeee
Q 012172 428 VWFGANITLKGKVTIA--AKSGEKLEIPDGAVLE 459 (469)
Q Consensus 428 v~fg~~V~i~g~~~I~--~~~~~~~~I~~~s~le 459 (469)
+++|++|.|+++++|. ...|+.+.|.++|++-
T Consensus 132 i~IGd~v~IG~~~~I~~gv~IG~~~vIgagsvV~ 165 (203)
T PRK09527 132 ITIGNNVWIGSHVVINPGVTIGDNSVIGAGSVVT 165 (203)
T ss_pred eEECCCcEECCCCEEcCCCEECCCCEECCCCEEc
Confidence 4555555555555444 2344445555555543
|
|
| >PRK14360 glmU bifunctional N-acetylglucosamine-1-phosphate uridyltransferase/glucosamine-1-phosphate acetyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=83.42 E-value=1.3 Score=47.07 Aligned_cols=41 Identities=22% Similarity=0.266 Sum_probs=25.1
Q ss_pred EECCCcEEeeeEEEEecCCCceeeCCCCeee-cceecCCCCC
Q 012172 429 WFGANITLKGKVTIAAKSGEKLEIPDGAVLE-NKEINGPGDL 469 (469)
Q Consensus 429 ~fg~~V~i~g~~~I~~~~~~~~~I~~~s~le-~~~v~~~~~~ 469 (469)
.+|++++|.++.+..+..++.+.|.++++|. +++|+.+.+|
T Consensus 299 ~I~~~~~I~~~~i~~~~ig~~~~I~~~~~I~~~~~Ig~~~~I 340 (450)
T PRK14360 299 QIGENVTVLYSVVSDSQIGDGVKIGPYAHLRPEAQIGSNCRI 340 (450)
T ss_pred EEcCCCEEeeeEEeeccccCCcEECCCCEECCCCEEeCceEE
Confidence 3444444433222235567778888999996 6888776643
|
|
| >cd00710 LbH_gamma_CA Gamma carbonic anhydrases (CA): Carbonic anhydrases are zinc-containing enzymes that catalyze the reversible hydration of carbon dioxide in a two-step mechanism, involving the nucleophilic attack of a zinc-bound hydroxide ion on carbon dioxide, followed by the regeneration of the active site by ionization of the zinc-bound water molecule and removal of a proton from the active site | Back alignment and domain information |
|---|
Probab=83.27 E-value=2.5 Score=38.69 Aligned_cols=47 Identities=23% Similarity=0.433 Sum_probs=26.3
Q ss_pred CceEEEe----eEEECCCcEEeeeEEEEecC------CCceeeCCCCeeec-ceecCC
Q 012172 420 DSLKVTG----DVWFGANITLKGKVTIAAKS------GEKLEIPDGAVLEN-KEINGP 466 (469)
Q Consensus 420 ~~l~v~G----~v~fg~~V~i~g~~~I~~~~------~~~~~I~~~s~le~-~~v~~~ 466 (469)
.+++|.+ .+++|+++.|..+++|.+.. |+.+.|.+++.|.+ ++|+.+
T Consensus 31 ~~~~i~~~~~~~v~IG~~~~I~~~~~i~~~~~~~v~Ig~~~~I~~~~~i~g~~~Ig~~ 88 (167)
T cd00710 31 PGASIRADEGTPIIIGANVNIQDGVVIHALEGYSVWIGKNVSIAHGAIVHGPAYIGDN 88 (167)
T ss_pred CCcEEeCCCCCcEEECCCCEECCCeEEEecCCCCEEECCCceECCCCEEeCCEEECCC
Confidence 4444444 36777777777777775432 44444555555554 555444
|
They are ubiquitous enzymes involved in fundamental processes like photosynthesis, respiration, pH homeostasis and ion transport. There are three distinct groups of carbonic anhydrases - alpha, beta and gamma - which show no significant sequence identity or structural similarity. Gamma CAs are homotrimeric enzymes, with each subunit containing a left-handed parallel beta helix (LbH) structural domain. |
| >PLN02739 serine acetyltransferase | Back alignment and domain information |
|---|
Probab=83.07 E-value=1.2 Score=46.03 Aligned_cols=31 Identities=23% Similarity=0.258 Sum_probs=17.3
Q ss_pred EEECCCcEEeeeEEEE--ecCCCceeeCCCCee
Q 012172 428 VWFGANITLKGKVTIA--AKSGEKLEIPDGAVL 458 (469)
Q Consensus 428 v~fg~~V~i~g~~~I~--~~~~~~~~I~~~s~l 458 (469)
+++|++|.|+.+++|. ...|+.+.|.++|++
T Consensus 258 p~IGd~V~IGagA~IlG~V~IGd~aiIGAGSVV 290 (355)
T PLN02739 258 PKIGDGALLGACVTILGNISIGAGAMVAAGSLV 290 (355)
T ss_pred cEECCCCEEcCCCEEeCCeEECCCCEECCCCEE
Confidence 5555555555555554 334555566666655
|
|
| >PRK00844 glgC glucose-1-phosphate adenylyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=82.94 E-value=1.3 Score=46.67 Aligned_cols=33 Identities=9% Similarity=0.182 Sum_probs=17.3
Q ss_pred EEECCCcEEeeeEEEEec-CCCceeeCCCCeeec
Q 012172 428 VWFGANITLKGKVTIAAK-SGEKLEIPDGAVLEN 460 (469)
Q Consensus 428 v~fg~~V~i~g~~~I~~~-~~~~~~I~~~s~le~ 460 (469)
+.++++++|+.+|.|.++ .++.+.|.+++++.+
T Consensus 349 sii~~~~~i~~~~~i~~~ii~~~~~i~~~~~i~~ 382 (407)
T PRK00844 349 SVLMDGVRIGRGAVVRRAILDKNVVVPPGATIGV 382 (407)
T ss_pred eEECCCCEECCCCEEEeeEECCCCEECCCCEECC
Confidence 345566666666666633 333455555555543
|
|
| >PRK10191 putative acyl transferase; Provisional | Back alignment and domain information |
|---|
Probab=82.39 E-value=1.9 Score=38.95 Aligned_cols=33 Identities=21% Similarity=0.413 Sum_probs=15.9
Q ss_pred EECCCcEEeeeEEEE--ecCCCceeeCCCCeeecc
Q 012172 429 WFGANITLKGKVTIA--AKSGEKLEIPDGAVLENK 461 (469)
Q Consensus 429 ~fg~~V~i~g~~~I~--~~~~~~~~I~~~s~le~~ 461 (469)
.+|+++.|++++.|. ...|+.+.|.++|++...
T Consensus 94 ~IGd~~~Ig~~~~I~~~v~IG~~~~Igags~V~~d 128 (146)
T PRK10191 94 HIGNGVELGANVIILGDITIGNNVTVGAGSVVLDS 128 (146)
T ss_pred EECCCcEEcCCCEEeCCCEECCCCEECCCCEECCc
Confidence 444444444444444 234444555565555544
|
|
| >cd03353 LbH_GlmU_C N-acetyl-glucosamine-1-phosphate uridyltransferase (GlmU), C-terminal left-handed beta-helix (LbH) acetyltransferase domain: GlmU is also known as UDP-N-acetylglucosamine pyrophosphorylase | Back alignment and domain information |
|---|
Probab=82.29 E-value=2.4 Score=39.60 Aligned_cols=9 Identities=22% Similarity=0.158 Sum_probs=3.3
Q ss_pred CCCcEEeee
Q 012172 431 GANITLKGK 439 (469)
Q Consensus 431 g~~V~i~g~ 439 (469)
|++++|+.+
T Consensus 71 g~~~~Ig~~ 79 (193)
T cd03353 71 GNGATVGPF 79 (193)
T ss_pred CCCCEECCc
Confidence 333333333
|
It is a bifunctional bacterial enzyme that catalyzes two consecutive steps in the formation of UDP-N-acetylglucosamine (UDP-GlcNAc), an important precursor in bacterial cell wall formation. The two enzymatic activities, uridyltransferase and acetyltransferase, are carried out by two independent domains. The C-terminal LbH domain possesses the acetyltransferase activity. It catalyzes the CoA-dependent acetylation of GlcN-1-phosphate to GlcNAc-1-phosphate. The LbH domain contains 10 turns, each containing three imperfect tandem repeats of a hexapeptide repeat motif (X-[STAV]-X-[LIV]-[GAED]-X. The acetyltransferase active site is located at the interface between two subunits of the active LbH trimer. |
| >cd03350 LbH_THP_succinylT 2,3,4,5-tetrahydropyridine-2,6-dicarboxylate (THDP) N-succinyltransferase (also called THP succinyltransferase): THDP N-succinyltransferase catalyzes the conversion of tetrahydrodipicolinate and succinyl-CoA to N-succinyltetrahydrodipicolinate and CoA | Back alignment and domain information |
|---|
Probab=80.96 E-value=1.4 Score=38.98 Aligned_cols=17 Identities=24% Similarity=0.315 Sum_probs=6.9
Q ss_pred eeEEECCCcEEeeeEEE
Q 012172 426 GDVWFGANITLKGKVTI 442 (469)
Q Consensus 426 G~v~fg~~V~i~g~~~I 442 (469)
.++++|+++.|..++.|
T Consensus 48 ~~~~IG~~~~I~~~~~i 64 (139)
T cd03350 48 SCAQIGKNVHLSAGAVI 64 (139)
T ss_pred CCCEECCCCEECCCCEE
Confidence 33444444444444333
|
It is the committed step in the succinylase pathway by which bacteria synthesize L-lysine and meso-diaminopimelate, a component of peptidoglycan. The enzyme is homotrimeric and each subunit contains an N-terminal region with alpha helices and hairpin loops, as well as a C-terminal region with a left-handed parallel alpha-helix (LbH) structural motif encoded by hexapeptide repeat motifs. |
| >cd03357 LbH_MAT_GAT Maltose O-acetyltransferase (MAT) and Galactoside O-acetyltransferase (GAT): MAT and GAT catalyze the CoA-dependent acetylation of the 6-hydroxyl group of their respective sugar substrates | Back alignment and domain information |
|---|
Probab=80.85 E-value=2.9 Score=38.36 Aligned_cols=36 Identities=25% Similarity=0.391 Sum_probs=21.8
Q ss_pred EeeEEECCCcEEeeeEEEE--ecCCCceeeCCCCeeec
Q 012172 425 TGDVWFGANITLKGKVTIA--AKSGEKLEIPDGAVLEN 460 (469)
Q Consensus 425 ~G~v~fg~~V~i~g~~~I~--~~~~~~~~I~~~s~le~ 460 (469)
.++|++|++|.|+.+++|- ...|+.+.|.++|++-.
T Consensus 116 ~~~v~IG~~~~Ig~~a~I~~gv~Ig~~~~VgagavV~~ 153 (169)
T cd03357 116 AKPITIGDNVWIGGGVIILPGVTIGDNSVIGAGSVVTK 153 (169)
T ss_pred cCCcEeCCCEEECCCCEEeCCCEECCCCEECCCCEEcc
Confidence 4466777777777666665 34455566666665543
|
MAT acetylates maltose and glucose exclusively at the C6 position of the nonreducing end glucosyl moiety. GAT specifically acetylates galactopyranosides. Furthermore, MAT shows higher affinity toward artificial substrates containing an alkyl or hydrophobic chain as well as a glucosyl unit. Active MAT and GAT are homotrimers, with each subunit consisting of an N-terminal alpha-helical region and a C-terminal left-handed parallel alpha-helix (LbH) subdomain with 6 turns, each containing three imperfect tandem repeats of a hexapeptide repeat motif (X-[STAV]-X-[LIV]-[GAED]-X). |
| >TIGR03570 NeuD_NnaD sugar O-acyltransferase, sialic acid O-acetyltransferase NeuD family | Back alignment and domain information |
|---|
Probab=80.75 E-value=2.1 Score=39.51 Aligned_cols=41 Identities=22% Similarity=0.362 Sum_probs=23.7
Q ss_pred CceEEEeeEEECCCcEEeeeEEEE--ecCCCceeeCCCCeeec
Q 012172 420 DSLKVTGDVWFGANITLKGKVTIA--AKSGEKLEIPDGAVLEN 460 (469)
Q Consensus 420 ~~l~v~G~v~fg~~V~i~g~~~I~--~~~~~~~~I~~~s~le~ 460 (469)
.++++.+++.+|+++.|+.+++|. ...++.+.|+++|++..
T Consensus 146 ~~~~i~~~~~ig~~~~ig~~~~v~~~~~i~~~~~i~~~~~v~~ 188 (201)
T TIGR03570 146 PGVTLSGGVVIGEGVFIGAGATIIQGVTIGAGAIVGAGAVVTK 188 (201)
T ss_pred CCCEEeCCcEECCCCEECCCCEEeCCCEECCCCEECCCCEECC
Confidence 455566666777777777666665 22444455555555543
|
These proteins contain repeats of the bacterial transferase hexapeptide (pfam00132), although often these do not register above the trusted cutoff. |
| >cd03354 LbH_SAT Serine acetyltransferase (SAT): SAT catalyzes the CoA-dependent acetylation of the side chain hydroxyl group of L-serine to form O-acetylserine, as the first step of a two-step biosynthetic pathway in bacteria and plants leading to the formation of L-cysteine | Back alignment and domain information |
|---|
Probab=80.37 E-value=2.9 Score=34.64 Aligned_cols=31 Identities=23% Similarity=0.396 Sum_probs=13.4
Q ss_pred EECCCcEEeeeEEEEe--cCCCceeeCCCCeee
Q 012172 429 WFGANITLKGKVTIAA--KSGEKLEIPDGAVLE 459 (469)
Q Consensus 429 ~fg~~V~i~g~~~I~~--~~~~~~~I~~~s~le 459 (469)
.+|+++.|..++.+.. ..++.+.|.++|++.
T Consensus 56 ~Ig~~~~Ig~~~~i~~~~~Ig~~~~i~~~~~i~ 88 (101)
T cd03354 56 TIGDNVVIGAGAKILGNITIGDNVKIGANAVVT 88 (101)
T ss_pred EECCCcEEcCCCEEECcCEECCCCEECCCCEEC
Confidence 3444444444444431 133444455555444
|
This reaction represents a key metabolic point of regulation for the cysteine biosynthetic pathway due to its feedback inhibition by cysteine. The enzyme is a 175 kDa homohexamer, composed of a dimer of homotrimers. Each subunit contains an N-terminal alpha helical region and a C-terminal left-handed beta-helix (LbH) subdomain with 5 turns, each containing a hexapeptide repeat motif characteristic of the acyltransferase superfamily of enzymes. The trimer interface mainly involves the C-terminal LbH subdomain while the dimer (of trimers) interface is mediated by the N-terminal alpha helical subdomain. |
| >COG1043 LpxA Acyl-[acyl carrier protein] | Back alignment and domain information |
|---|
Probab=80.07 E-value=1.8 Score=42.30 Aligned_cols=37 Identities=22% Similarity=0.205 Sum_probs=18.0
Q ss_pred eEEEeeEEECCCcEEeeeEEEE--ecCCCceeeCCCCee
Q 012172 422 LKVTGDVWFGANITLKGKVTIA--AKSGEKLEIPDGAVL 458 (469)
Q Consensus 422 l~v~G~v~fg~~V~i~g~~~I~--~~~~~~~~I~~~s~l 458 (469)
++|.++|.+|+||+|+.+|+|. .+.|....|.+|+.|
T Consensus 28 ~iIg~~V~ig~~t~l~shvvv~G~T~IG~~n~I~~~A~i 66 (260)
T COG1043 28 CIIGPNVEIGDGTVLKSHVVVEGHTTIGRNNRIFPFASI 66 (260)
T ss_pred EEECCCcEECCCcEEcccEEEeCCeEECCCCEEeccccc
Confidence 4444455555555555555555 234444445555444
|
|
| >cd03352 LbH_LpxD UDP-3-O-acyl-glucosamine N-acyltransferase (LpxD): The enzyme catalyzes the transfer of 3-hydroxymyristic acid or 3-hydroxy-arachidic acid, depending on the organism, from the acyl carrier protein (ACP) to UDP-3-O-acyl-glucosamine to produce UDP-2,3-diacyl-GlcNAc | Back alignment and domain information |
|---|
Probab=80.02 E-value=1.8 Score=40.74 Aligned_cols=21 Identities=10% Similarity=0.279 Sum_probs=9.0
Q ss_pred eEEEeeEEECCCcEEeeeEEE
Q 012172 422 LKVTGDVWFGANITLKGKVTI 442 (469)
Q Consensus 422 l~v~G~v~fg~~V~i~g~~~I 442 (469)
++|.+++++|+++.|..+++|
T Consensus 50 ~~i~~~~~Ig~~~~I~~~~~i 70 (205)
T cd03352 50 VTIYEGCIIGDRVIIHSGAVI 70 (205)
T ss_pred CEEcCCCEECCCcEECCCCEE
Confidence 333334444444444444444
|
This constitutes the third step in the lipid A biosynthetic pathway in Gram-negative bacteria. LpxD is a homotrimer, with each subunit consisting of a novel combination of an N-terminal uridine-binding domain, a core lipid-binding left-handed parallel beta helix (LbH) domain, and a C-terminal alpha-helical extension. The LbH domain contains 9 turns, each containing three imperfect tandem repeats of a hexapeptide repeat motif (X-[STAV]-X-[LIV]-[GAED]-X). |
Homologous Structure Templates
Structure Templates Detected by BLAST 
Original result of BLAST against Protein Data Bank
ID ![]() | Alignment Graph ![]() | Length ![]() |
Definition ![]() |
E-value ![]() | |
| Query | 469 | ||||
| 1z90_A | 469 | X-Ray Structure Of Gene Product From Arabidopsis Th | 0.0 | ||
| 2icx_A | 469 | Crystal Structure Of A Putative Udp-Glucose Pyropho | 0.0 | ||
| 2i5k_A | 488 | Crystal Structure Of Ugp1p Length = 488 | 1e-131 | ||
| 3r2w_A | 528 | Crystal Strucutre Of Udp-Glucose Pyrophosphorylase | 1e-129 | ||
| 3gue_A | 484 | Crystal Structure Of Udp-Glucose Phosphorylase From | 1e-66 | ||
| 2oef_A | 505 | Open And Closed Structures Of The Udp-Glucose Pyrop | 2e-53 | ||
| 3oc9_A | 405 | Crystal Structure Of Putative Udp-N-Acetylglucosami | 5e-09 |
| >pdb|1Z90|A Chain A, X-Ray Structure Of Gene Product From Arabidopsis Thaliana At3g03250, A Putative Udp-Glucose Pyrophosphorylase Length = 469 | Back alignment and structure |
|
| >pdb|2ICX|A Chain A, Crystal Structure Of A Putative Udp-Glucose Pyrophosphorylase From Arabidopsis Thaliana With Bound Utp Length = 469 | Back alignment and structure |
|
| >pdb|2I5K|A Chain A, Crystal Structure Of Ugp1p Length = 488 | Back alignment and structure |
|
| >pdb|3R2W|A Chain A, Crystal Strucutre Of Udp-Glucose Pyrophosphorylase Of Homo Sapiens Length = 528 | Back alignment and structure |
|
| >pdb|3GUE|A Chain A, Crystal Structure Of Udp-Glucose Phosphorylase From Trypanosoma Brucei, (Tb10.389.0330) Length = 484 | Back alignment and structure |
|
| >pdb|2OEF|A Chain A, Open And Closed Structures Of The Udp-Glucose Pyrophosphorylase From Leishmania Major Length = 505 | Back alignment and structure |
|
| >pdb|3OC9|A Chain A, Crystal Structure Of Putative Udp-N-Acetylglucosamine Pyrophosphorylase From Entamoeba Histolytica Length = 405 | Back alignment and structure |
|
Structure Templates Detected by RPS-BLAST 
Original result of RPS-BLAST against PDB70 database
ID ![]() | Alignment Graph ![]() | Length ![]() |
Definition ![]() |
E-value ![]() |
| Query | 469 | |||
| 2icy_A | 469 | Probable UTP-glucose-1-phosphate uridylyltransfera | 0.0 | |
| 3r3i_A | 528 | UTP--glucose-1-phosphate uridylyltransferase; ross | 1e-176 | |
| 2i5k_A | 488 | UTP--glucose-1-phosphate uridylyltransferase; LEFT | 1e-172 | |
| 2oeg_A | 505 | UTP-glucose-1-phosphate uridylyltransferase 2, put | 1e-157 | |
| 3gue_A | 484 | UTP-glucose-1-phosphate uridylyltransferase 2; pho | 1e-156 | |
| 1jv1_A | 505 | Glcnac1P uridyltransferase isoform 1: AGX1; nucleo | 6e-94 | |
| 3ogz_A | 630 | UDP-sugar pyrophosphorylase; LEFT handed beta heli | 7e-92 | |
| 3oc9_A | 405 | UDP-N-acetylglucosamine pyrophosphorylase; structu | 7e-87 | |
| 2yqc_A | 486 | UDP-N-acetylglucosamine pyrophosphorylase; uridine | 3e-80 | |
| 1vt4_I | 1221 | APAF-1 related killer DARK; drosophila apoptosome, | 2e-08 | |
| 1vt4_I | 1221 | APAF-1 related killer DARK; drosophila apoptosome, | 2e-05 |
| >3r3i_A UTP--glucose-1-phosphate uridylyltransferase; rossmann fold, beta barrel, nucleotidyltransferase; 3.57A {Homo sapiens} PDB: 3r2w_A Length = 528 | Back alignment and structure |
|---|
Score = 504 bits (1299), Expect = e-176
Identities = 250/473 (52%), Positives = 335/473 (70%), Gaps = 11/473 (2%)
Query: 1 MATDAEKLTQLKSAVAGLNQISENEKNGFINLVARYLSGEAQHVEWSKIQTPTDKIVVPC 60
+ + EK+ L +A + + ++ + +GF L R+L + V+W KIQ P + + P
Sbjct: 52 VKKELEKI--LTTASSHEFEHTKKDLDGFRKLFHRFLQEKGPSVDWGKIQRPPEDSIQPY 109
Query: 61 DSLAPVPEDPAETKKLLDKLVVLKLNGGLGTTMGCTGPKSVIEVRNGLTFLDLIVIQIEN 120
+ + P +L+KLVV+KLNGGLGT+MGC GPKS+I VRN TFLDL V QIE+
Sbjct: 110 EKIKA-RGLPDNISSVLNKLVVVKLNGGLGTSMGCKGPKSLIGVRNENTFLDLTVQQIEH 168
Query: 121 LNAKYGCNVPLLLMNSFNTHDDTSKIIEKYSKSNVEIHTFNQSQYPRLCADDFVPLPCK- 179
LN Y +VPL+LMNSFNT +DT KI++KY+ V+I+TFNQS+YPR+ + +P+
Sbjct: 169 LNKTYNTDVPLVLMNSFNTDEDTKKILQKYNHCRVKIYTFNQSRYPRINKESLLPVAKDV 228
Query: 180 --GKTDKDGWYPPGHGDVFPSLMNSGKLDALISQGKEYVFAANSDNLGAIVDLKILNHLI 237
+ + WYPPGHGD++ S NSG LD I +GKEY+F +N DNLGA VDL ILNHL+
Sbjct: 229 SYSGENTEAWYPPGHGDIYASFYNSGLLDTFIGEGKEYIFVSNIDNLGATVDLYILNHLM 288
Query: 238 Q----NKNEYCMEVTPKTLADVKGGTLISYEGKVQLLEIAQVPDEHVNEFKSIEKFKIFN 293
+ E+ MEVT KT ADVKGGTL YEGK++L+EIAQVP HV+EFKS+ KFKIFN
Sbjct: 289 NPPNGKRCEFVMEVTNKTRADVKGGTLTQYEGKLRLVEIAQVPKAHVDEFKSVSKFKIFN 348
Query: 294 TNNLWVNLKAIKRLVEADALKMEIIPNPKEVD-GIKVLQLETAAGAAIRFFDHAIGCNVH 352
TNNLW++L A+KRL E +A+ MEII N K +D G+ V+QLETA GAAI+ F++++G NV
Sbjct: 349 TNNLWISLAAVKRLQEQNAIDMEIIVNAKTLDGGLNVIQLETAVGAAIKSFENSLGINVP 408
Query: 353 RSRFLPVKATSDLLLVQSDLYTLADGFVTRNEARKNPANPTIELGPEFKKVGNFLSRFKS 412
RSRFLPVK TSDLLLV S+LY+L G +T +E R+ P P ++LG F KV ++L RF+S
Sbjct: 409 RSRFLPVKTTSDLLLVMSNLYSLNAGSLTMSEKREFPTVPLVKLGSSFTKVQDYLRRFES 468
Query: 413 IPSIIELDSLKVTGDVWFGANITLKGKVTIAAKSGEKLEIPDGAVLENKEING 465
IP ++ELD L V+GDV FG N++LKG V I A G++++IP GAVLENK ++G
Sbjct: 469 IPDMLELDHLTVSGDVTFGKNVSLKGTVIIIANHGDRIDIPPGAVLENKIVSG 521
|
| >2i5k_A UTP--glucose-1-phosphate uridylyltransferase; LEFT-handed beta-helix, SGC domain; 3.10A {Saccharomyces cerevisiae} Length = 488 | Back alignment and structure |
|---|
Score = 492 bits (1267), Expect = e-172
Identities = 256/471 (54%), Positives = 324/471 (68%), Gaps = 11/471 (2%)
Query: 1 MATDAEKLTQLKSAVAGLNQISENEKNGFINLVARYLSGEAQ--HVEWSKIQTPTDKIVV 58
M KL ENE + F L RYL ++ +EW KI++P VV
Sbjct: 16 MRNALNKLADSSKLDDAARAKFENELDSFFTLFRRYLVEKSSRTTLEWDKIKSPNPDEVV 75
Query: 59 PCDSLAPVPEDPAETKKLLDKLVVLKLNGGLGTTMGCTGPKSVIEVRNGLTFLDLIVIQI 118
+ ++ PE+ + L KL VLKLNGGLGT+MGC GPKSVIEVR G TFLDL V QI
Sbjct: 76 KYEIISQQPENVSN----LSKLAVLKLNGGLGTSMGCVGPKSVIEVREGNTFLDLSVRQI 131
Query: 119 ENLNAKYGCNVPLLLMNSFNTHDDTSKIIEKYSKSNVEIHTFNQSQYPRLCADDFVPLPC 178
E LN +Y +VPLLLMNSFNT DT +I+KYS + + I +FNQS++PR+ D +P+P
Sbjct: 132 EYLNRQYDSDVPLLLMNSFNTDKDTEHLIKKYSANRIRIRSFNQSRFPRVYKDSLLPVPT 191
Query: 179 KGKTDKDGWYPPGHGDVFPSLMNSGKLDALISQGKEYVFAANSDNLGAIVDLKILNHLIQ 238
+ + D WYPPGHGD+F SL SG+LDALI+QG+E +F +N DNLGA VDLKILNH+I+
Sbjct: 192 EYDSPLDAWYPPGHGDLFESLHVSGELDALIAQGREILFVSNGDNLGATVDLKILNHMIE 251
Query: 239 NKNEYCMEVTPKTLADVKGGTLISYEGKVQLLEIAQVPDEHVNEFKSIEKFKIFNTNNLW 298
EY ME+T KT ADVKGGTLISY+G+V+LLE+AQVP EH++EFK+I KF FNTNNLW
Sbjct: 252 TGAEYIMELTDKTRADVKGGTLISYDGQVRLLEVAQVPKEHIDEFKNIRKFTNFNTNNLW 311
Query: 299 VNLKAIKRLVEADALKMEIIPNPKEV----DGIKVLQLETAAGAAIRFFDHAIGCNVHRS 354
+NLKA+KRL+E+ L+MEIIPN K + I VLQLETA GAAIR FD A G V RS
Sbjct: 312 INLKAVKRLIESSNLEMEIIPNQKTITRDGHEINVLQLETACGAAIRHFDGAHGVVVPRS 371
Query: 355 RFLPVKATSDLLLVQSDLYTLADGFVTRNEARKNPANPTIELGPEFKKVGNFLSRFKSIP 414
RFLPVK SDLLLV+SDL+ L G + + +R P NP I+LG FKKV F +R IP
Sbjct: 372 RFLPVKTCSDLLLVKSDLFRLEHGSLKLDPSRFGP-NPLIKLGSHFKKVSGFNARIPHIP 430
Query: 415 SIIELDSLKVTGDVWFGANITLKGKVTIAAKSGEKLEIPDGAVLENKEING 465
I+ELD L +TG+V+ G ++TL+G V I G K++IP+G++LEN + G
Sbjct: 431 KIVELDHLTITGNVFLGKDVTLRGTVIIVCSDGHKIDIPNGSILENVVVTG 481
|
| >2oeg_A UTP-glucose-1-phosphate uridylyltransferase 2, putative; rossmann-fold, beta-helix, pyrophosphorylase; HET: UPG; 2.30A {Leishmania major} PDB: 2oef_A* Length = 505 | Back alignment and structure |
|---|
Score = 454 bits (1169), Expect = e-157
Identities = 157/476 (32%), Positives = 226/476 (47%), Gaps = 34/476 (7%)
Query: 23 ENEKNGFINLVARYLSGEAQHVEWSKIQTPTDKIVVPCDSLAPVPEDPAE-TKKLLDKLV 81
I V + + D ++P DSL + E +L V
Sbjct: 22 AKVNEACIRTFIAQH----VMVSKGETGSIPDSAIMPVDSLDALDSLTIECDNAVLQSTV 77
Query: 82 VLKLNGGLGTTMGCTGPKSVIEVRNGLTFLDLIVIQIENLNAKYGCNVPLLLMNSFNTHD 141
VLKLNGGLGT MG K+++EV++G TFLD +Q++ L ++ +LM+SFNT
Sbjct: 78 VLKLNGGLGTGMGLCDAKTLLEVKDGKTFLDFTALQVQYLRQHCSEHLRFMLMDSFNTSA 137
Query: 142 DTSKIIEKYSKSNVEIH----TFNQSQYPRLCADDFVPLPCKGKTDKDGWYPPGHGDVFP 197
T ++ ++ Q+Q P++ D P + W PPGHGD++
Sbjct: 138 STKSFLKARYPWLYQVFDSEVELMQNQVPKILQDTLEPAA-WAENPAYEWAPPGHGDIYT 196
Query: 198 SLMNSGKLDALISQGKEYVFAANSDNLGAIVDLKILNHLIQNKNEYCMEVTPKTLADVKG 257
+L SGKL L+ QG Y+F +N DNLGA +D ++L ++ + K ++ MEV +T +D KG
Sbjct: 197 ALYGSGKLQELVEQGYRYMFVSNGDNLGATIDKRVLAYMEKEKIDFLMEVCRRTESDKKG 256
Query: 258 GTLISYEGKV--------------QLLEIAQVPDEHVNEFKSIEKFKIFNTNNLWVNLKA 303
G L V L E AQ P + F+ I K+ FNTNNLW+ L
Sbjct: 257 GHLARQTVYVKGKDGQPDAEKRVLLLRESAQCPKADMESFQDINKYSFFNTNNLWIRLPV 316
Query: 304 IKRLVEADA--LKMEIIPNPKEVD-----GIKVLQLETAAGAAIRFFDHAIGCNVHRSRF 356
+ ++ L + +I N K VD KV QLETA GAAI F+ A V RSRF
Sbjct: 317 LLETMQEHGGTLPLPVIRNEKTVDSSNSASPKVYQLETAMGAAIAMFESASAIVVPRSRF 376
Query: 357 LPVKATSDLLLVQSDLYTLADGFVTRNEARKNPANPTIELGPE-FKKVGNFLSRFK-SIP 414
PVK +DLL ++SD Y + D F + R + P ++L +K + F + +P
Sbjct: 377 APVKTCADLLALRSDAYVVTDDFRLVLDDRCHGHPPVVDLDSAHYKMMNGFEKLVQHGVP 436
Query: 415 SIIELDSLKVTGDVWFGANITLKGKVTI-AAKSGEKLEIPDGAVLENKEINGPGDL 469
S++E + V G V FGA L G VTI S IPDGA L + +
Sbjct: 437 SLVECKRVTVKGLVQFGAGNVLTGTVTIENTDSASAFVIPDGAKLNDTTASPQQST 492
|
| >3gue_A UTP-glucose-1-phosphate uridylyltransferase 2; phosphatase, UDP, structural GE structural genomics consortium, SGC; HET: UPG PG4; 1.92A {Trypanosoma brucei} Length = 484 | Back alignment and structure |
|---|
Score = 451 bits (1160), Expect = e-156
Identities = 168/479 (35%), Positives = 252/479 (52%), Gaps = 25/479 (5%)
Query: 9 TQLKSAVAGLNQISENEKNGFINLVARYLSGEAQHVEWSKIQTPTDKIVVPCDSLAPV-- 66
+ A L + + + +G + V + +K + P +SL +
Sbjct: 4 PPSAFSGAALACLEKMQASGVEEKCIHIFLIQHALVRKGETGYIPEKSISPVESLPFLQG 63
Query: 67 PEDPAETKKLLDKLVVLKLNGGLGTTMGCTGPKSVIEVRNGLTFLDLIVIQIENLNAKYG 126
E E LL + VVLKLNGGLGT MG GPKS+++V+NG TFLD +Q+E+
Sbjct: 64 IETKGENTALLRQAVVLKLNGGLGTGMGLNGPKSLLQVKNGQTFLDFTALQLEHFRQVRN 123
Query: 127 CNVPLLLMNSFNTHDDTSKIIEKYSKSNV---EIHTFNQSQYPRLCADDFVPLPCKGKTD 183
CNVP +LMNSF+T +T + KY Q++ P++ D+F P+ +
Sbjct: 124 CNVPFMLMNSFSTSGETKNFLRKYPTLYEVFDSDIELMQNRVPKIRQDNFFPVTYEAD-P 182
Query: 184 KDGWYPPGHGDVFPSLMNSGKLDALISQGKEYVFAANSDNLGAIVDLKILNHLIQNKNEY 243
W PPGHGDV+ L +SGKLD L+ +G Y+F +N DNLGA +D+++L+++ + + +
Sbjct: 183 TCEWVPPGHGDVYTVLYSSGKLDYLLGKGYRYMFISNGDNLGATLDVRLLDYMHEKQLGF 242
Query: 244 CMEVTPKTLADVKGGTLISY----------EGKVQLLEIAQVPDEHVNEFKSIEKFKIFN 293
MEV +T +D KGG L + L E AQ P E + F++I K FN
Sbjct: 243 LMEVCRRTESDKKGGHLAYKDVIDETTGQTRRRFVLRESAQCPKEDEDSFQNIAKHCFFN 302
Query: 294 TNNLWVNLKAIKRLVEAD--ALKMEIIPNPKEVD-----GIKVLQLETAAGAAIRFFDHA 346
TNN+W+NL +K++++ L++ ++ NPK V+ KV QLE A GAAI FD +
Sbjct: 303 TNNIWINLMELKKMMDEQLGVLRLPVMRNPKTVNPQDSQSTKVYQLEVAMGAAISLFDRS 362
Query: 347 IGCNVHRSRFLPVKATSDLLLVQSDLYTLADGFVTRNEARKNPANPTIELGPE-FKKVGN 405
V R RF PVK SDLL ++SD Y + + +N P I+L E +K +
Sbjct: 363 EAVVVPRERFAPVKTCSDLLALRSDAYQVTEDQRLVLCEERNGKPPAIDLDGEHYKMIDG 422
Query: 406 FLSRFK-SIPSIIELDSLKVTGDVWFGANITLKGKVTIAAKSGEKLEIPDGAVLENKEI 463
F K +PS+ + SL V G V FGA+++++G V I E L I G VL+N+ +
Sbjct: 423 FEKLVKGGVPSLRQCTSLTVRGLVEFGADVSVRGNVVIKNLKEEPLIIGSGRVLDNEVV 481
|
| >1jv1_A Glcnac1P uridyltransferase isoform 1: AGX1; nucleotidyltransferase, alternative splicing; HET: UD1; 1.90A {Homo sapiens} SCOP: c.68.1.5 PDB: 1jv3_A* 1jvg_A* 1jvd_A* 1vm8_A* Length = 505 | Back alignment and structure |
|---|
Score = 292 bits (748), Expect = 6e-94
Identities = 84/497 (16%), Positives = 172/497 (34%), Gaps = 73/497 (14%)
Query: 16 AGLNQISENEKNGFIN--------LVARYLSGEAQHVEWSKIQTPTDKIV--VPCDSLAP 65
N++ E ++ + + + S Q D + VP + L
Sbjct: 20 RFWNELEEAQQVELYAELQAMNFEELNFFFQKAIEGFNQSSHQKNVDARMEPVPREVLGS 79
Query: 66 VPEDPAETKKLLD---------KLVVLKLNGGLGTTMGCTGPKSVIEV--RNGLTFLDLI 114
D + + K+ VL L GG GT +G PK + +V + T +
Sbjct: 80 ATRDQDQLQAWESEGLFQISQNKVAVLLLAGGQGTRLGVAYPKGMYDVGLPSRKTLFQIQ 139
Query: 115 VIQIENLNAKYG------CNVPLLLMNSFNTHDDTSKIIEKYSKSNV---EIHTFNQSQY 165
+I L C +P +M S T + T + K+ + + F Q
Sbjct: 140 AERILKLQQVAEKYYGNKCIIPWYIMTSGRTMESTKEFFTKHKYFGLKKENVIFFQQGML 199
Query: 166 PRLCADDFVPLPCKGKTDKDGWYPPGHGDVFPSLMNSGKLDALISQGKEYVFAANSDNLG 225
P + D + L K +K P G+G ++ +L ++ + +G + DN+
Sbjct: 200 PAMSFDGKIILEEK---NKVSMAPDGNGGLYRALAAQNIVEDMEQRGIWSIHVYCVDNIL 256
Query: 226 A-IVDLKILNHLIQNKNEYCMEVTPKTLADVKGGTLISYEGKVQLLEIAQVPDEHVNEFK 284
+ D + + IQ + +V KT G + +G Q++E +++ +
Sbjct: 257 VKVADPRFIGFCIQKGADCGAKVVEKTNPTEPVGVVCRVDGVYQVVEYSEISLATAQKRS 316
Query: 285 SIEK--FKIFNTNNLWVNLKAIKRLVEADALKMEIIPNPKEV------------DGIKVL 330
S + F N N + + ++ +V +++ K++ D +
Sbjct: 317 SDGRLLFNAGNIANHFFTVPFLRDVVNVYEPQLQHHVAQKKIPYVDTQGQLIKPDKPNGI 376
Query: 331 QLETAAGAAIRFFDHAIGCNVHRSR-FLPVKATSDLLLVQSDLYTLADGFVTRNEARKNP 389
++E +F + V R F P+K + T ++ +
Sbjct: 377 KMEKFVFDIFQFAKKFVVYEVLREDEFSPLKNADSQNGKDN-PTTARHALMSLH------ 429
Query: 390 ANPTIELGPEFKKVGNFLSRFKSIPSIIELDSLKVTGDVWFGANITLKGKVTIAAKSGEK 449
+ G F + SR +IP + + + + + ++ ++ A GE
Sbjct: 430 HCWVLNAGGHF--IDENGSRLPAIPRLKDANDVPIQCEI--------SPLISYA---GEG 476
Query: 450 LEIPDGAVLENKEINGP 466
LE + + +KE + P
Sbjct: 477 LE----SYVADKEFHAP 489
|
| >3ogz_A UDP-sugar pyrophosphorylase; LEFT handed beta helix, rossmann fold, UDP sugar pyrophospho transferase; 2.03A {Leishmania major} PDB: 3oh3_A* 3oh1_A* 3oh0_A* 3oh2_A* 3oh4_A* Length = 630 | Back alignment and structure |
|---|
Score = 290 bits (743), Expect = 7e-92
Identities = 90/543 (16%), Positives = 161/543 (29%), Gaps = 87/543 (16%)
Query: 1 MATDAEKLTQLKSAVAGLNQISENEKNGFINLVARYLSGEAQHVEWSKIQTPTDKIVVPC 60
+ E+ L + + + + +I L+ E++ V+++ ++ P P
Sbjct: 34 VDECNERQIALLTDLYMFSNMYPGGVAQYIRNGHELLARESEEVDFAALEMPPLIFEAPS 93
Query: 61 DSLAPVPEDPAE--TKKLLDKLVVLKLNGGLGTTMGCTGPKSVIEVRNGLTFLDLIVIQI 118
E +L K V + + GGLG +G + K + V T + +
Sbjct: 94 LHRRTAERTALENAGTAMLCKTVFVLVAGGLGERLGYSSIKVSLPV-ETATNTTYLAYYL 152
Query: 119 ENLNAKYGCNVPLLLMNSFNTHDDTSKIIEKYSKSNVEIHTFNQSQYPRLCADDFVPLPC 178
G VP ++M S +THD T +++ + +H Q Q D
Sbjct: 153 RWAQRVGGKEVPFVIMTSDDTHDRTLQLLRELQLEVPNLHVLKQGQVFCF--ADSAAHLA 210
Query: 179 KGKTDKDGWYPPGHGDVFPSLMNSGK------------------LDALISQGKEYVFAAN 220
+T K P GHGDV + N+ ++ ++ G E +
Sbjct: 211 LDETGKLLRKPHGHGDVHSLIYNATVKRDVVPDSGDGTATAQPLVNDWLAAGYESIVFIQ 270
Query: 221 SDNLGAIVDLKILNHLIQNKNEYCMEVTPKTLADVKGGTLISYEGK-------------- 266
N GA + + I L + + G L +
Sbjct: 271 DTNAGATITIPISLALSAEHSLDMNFTCIPRVPKEPIGLLCRTKKNSGDPWLVANVEYNV 330
Query: 267 -VQLLEIAQVPDEHVNEFKSIEKFKIFNTNNLWVNLKAI-KRLVEADALKMEIIPNPKEV 324
++ + + N L L + RL E+ + E I NPK
Sbjct: 331 FAEVSRALNKDGGDEVSDPTGFSPFPGSVNTLVFKLSSYVDRLRESHGIVPEFI-NPKYS 389
Query: 325 DGIK-----VLQLETAAGAAIRFFDHAIGC----NVHRSRFLPVK--------------- 360
D + ++E+ F R + PVK
Sbjct: 390 DETRRSFKKPARIESLMQDIALLFSEDDYRVGGTVFERFSYQPVKNSLEEAAGLVAQGNG 449
Query: 361 ------ATSDLLLVQSDLYTLADGFVTRNE---------ARKNPANPTIELGPEFKKVGN 405
+ +Q + + A P I L G+
Sbjct: 450 AYCAATGEAAFYELQRRRLKAIGLPLFYSSQPEVTVAKDAFGVRLFPIIVLDTVCASSGS 509
Query: 406 F--LSRFKSIPSIIELD---SLKVTGDVWFGANITLKGKVTIAAKSGEKL--EIPDGAVL 458
L+R P + +D +L V G V ++ L G +TI + + AV+
Sbjct: 510 LDDLARVFPTPEKVHIDQHSTLIVEGRVIIE-SLELYGALTIRGPTDSMALPHVVRNAVV 568
Query: 459 ENK 461
N
Sbjct: 569 RNA 571
|
| >3oc9_A UDP-N-acetylglucosamine pyrophosphorylase; structural genomics, seattle structural genomics center for infectious disease, ssgcid; 1.80A {Entamoeba histolytica} Length = 405 | Back alignment and structure |
|---|
Score = 270 bits (692), Expect = 7e-87
Identities = 73/409 (17%), Positives = 154/409 (37%), Gaps = 47/409 (11%)
Query: 52 PTDKIVVPCDSLAPVPEDPAETKKL------LDKLVVLKLNGGLGTTMGCTGPKSV--IE 103
P P D E K ++ GG G+ +G PK + +
Sbjct: 2 PGSMTYQPVDITTNTIPVTKEHYYRGLELISQGKTALITPAGGQGSRLGFEHPKGMFVLP 61
Query: 104 VRNGLTFLDLIVIQIENL-------NAKYGCNVPLLLMNSFNTHDDTSKIIEKYS---KS 153
+ + ++ L + + + LM + T ++ + +++ S
Sbjct: 62 FEIPKSIFQMTSERLLRLQELASEYSHQKNVMIHWFLMTNEETIEEINNYFKEHQYFGLS 121
Query: 154 NVEIHTFNQSQYPRLCADDFVPLPCKGKTDKDGWYPPGHGDVFPSLMNSGKLDALISQGK 213
+ +IH F Q P + + + K DK P GHG +F +L ++G L+ + +G
Sbjct: 122 SEQIHCFPQGMLPVVDFNGKILYE---KKDKPYMAPNGHGGLFKALKDNGILEFMNEKGI 178
Query: 214 EYVFAANSDN-LGAIVDLKILNHLIQNKNEYCMEVTPKTLADVKGGTLISYEGKVQLLEI 272
+Y A N DN L VD ++ ++ ++E C+++ K + K G L+ + +++++E
Sbjct: 179 KYSVAHNVDNILCKDVDPNMIGYMDLLQSEICIKIVKKGFKEEKVGVLVKEQERIKVVEY 238
Query: 273 AQVPDEHVNEFKSIEKFKIFNTNNLWVNLKAIKRLVEADALKMEIIPNPKEVDGI----- 327
++ DE + + E +N ++ +N + L +A ++ K+V +
Sbjct: 239 TELTDELNKQLSNGEFI--YNCGHISINGYSTSFLEKAAEYQLPYHIAKKKVPFVNEQGI 296
Query: 328 -------KVLQLETAAGAAIRFFDHAIGCNVHRSR-FLPVK-----ATSDLLLVQSDLYT 374
++ E + R F +K + ++ V+ D Y
Sbjct: 297 VIHPSENNGIKKEIFFFDVFPLATKVSIFEIQRFIEFSALKNSLNESFDNVNTVKRDWYR 356
Query: 375 LADGFVTRNEAR-KNPANPTIELGPEFKKVGNFLSRFK----SIPSIIE 418
L ++ + A + +P E+ L FK +P I++
Sbjct: 357 LNIYYLKKAGAIVDDSKSPICEISFRKSFEEEGLKEFKGKTIQLPFILQ 405
|
| >2yqc_A UDP-N-acetylglucosamine pyrophosphorylase; uridine-diphospho-N- acetylglucosamine, N-acetylglucosamine-1-phosphate, transferase; 1.90A {Candida albicans} PDB: 2yqh_A* 2yqj_A* 2yqs_A* Length = 486 | Back alignment and structure |
|---|
Score = 256 bits (654), Expect = 3e-80
Identities = 72/477 (15%), Positives = 166/477 (34%), Gaps = 69/477 (14%)
Query: 1 MATDAEKLTQLKSA-----VAGLNQISENEKNGF------INLVARYLSGEAQHVEWSKI 49
+ + + + K A + ++ +++ F I A+ +S Q +++S+
Sbjct: 3 VKSQQQIIDSFKQANQDQLFQYYDSLTIDQQQEFIDQLSTIEEPAKLISTVEQAIQFSQT 62
Query: 50 QTPTDKIV-VPCDSLAPVPEDPAETKKLL----------DKLVVLKLNGGLGTTMGCTGP 98
+ + +P + A + + + ++ VL + GG GT +G + P
Sbjct: 63 NSTSRNFTQLPNEQTASTLDLSKDILQNWTELGLKAIGNGEVAVLLMAGGQGTRLGSSAP 122
Query: 99 KSV--IEVRNGLTFLDLIVIQIENL--------NAKYGCNVPLLLMNSFNTHDDTSKIIE 148
K IE+ + + + +I + + + +M S T + T
Sbjct: 123 KGCFNIELPSQKSLFQIQAEKILKIEQLAQQYLKSTKKPIINWYIMTSGPTRNATESFFI 182
Query: 149 KYSKSNV---EIHTFNQSQYPRLCADDFVPLPCKGKTDKDGWYPPGHGDVFPSLMNSGKL 205
+ + + ++ FNQ P L + P G+G ++ +L ++G L
Sbjct: 183 ENNYFGLNSHQVIFFNQGTLPCFNLQGNKILLEL--KNSICQSPDGNGGLYKALKDNGIL 240
Query: 206 DALISQGKEYVFAANSDNLGAIV-DLKILNHLIQNKNEYCMEVTPKTLADVKGGTLISYE 264
D L S+G +++ DN V D + I K + +V K A+ G ++ +
Sbjct: 241 DDLNSKGIKHIHMYCVDNCLVKVADPIFIGFAIAKKFDLATKVVRKRDANESVGLIVLDQ 300
Query: 265 --GKVQLLEIAQVPDEHVNEF----KSIEKFKIFNTNNLWVNLKAIKRLVEADALKMEII 318
K ++E +++ E N+ S + N N + +++ + +++ + +
Sbjct: 301 DNQKPCVIEYSEISQELANKKDPQDSSKLFLRAANIVNHYYSVEFLNKMIPKWISSQKYL 360
Query: 319 P---NPKEVDGI-------------KVLQLETAAGAAIRFFDH--AIGCNVHRSR-FLPV 359
P K++ + ++LE + V R F P+
Sbjct: 361 PFHIAKKKIPSLNLENGEFYKPTEPNGIKLEQFIFDVFPSVELNKFGCLEVDRLDEFSPL 420
Query: 360 K-----ATSDLLLVQSDLYTLADGFVTRNEARKNPANPTIELGPEFKKVGNFLSRFK 411
K ++ + +V +N + +E+ + G L
Sbjct: 421 KNADGAKNDTPTTCRNHYLERSSKWVIQNGGVIDNQGL-VEVDSKTSYGGEGLEFVN 476
|
| >1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 | Back alignment and structure |
|---|
Score = 56.0 bits (134), Expect = 2e-08
Identities = 44/303 (14%), Positives = 99/303 (32%), Gaps = 87/303 (28%)
Query: 30 INLVARYLSGEAQHVE-WSKIQTPT-DKIVVPC-DSLAPVPEDPAETKKLLDKLVVLKLN 86
++++A + + W + I+ + L +PAE +K+ D+L V +
Sbjct: 330 LSIIAESIRDGLATWDNWKHVNCDKLTTIIESSLNVL-----EPAEYRKMFDRLSVFPPS 384
Query: 87 GGLGTTMGCTGPKSVIEV--RNGLTFLDLIVIQ-------IENLNAKYGCNVPLLLM--- 134
+ P ++ + + + ++V+ +E + ++P + +
Sbjct: 385 AHI--------PTILLSLIWFDVIKSDVMVVVNKLHKYSLVEKQPKESTISIPSIYLELK 436
Query: 135 ----NSFNTHDDTSKIIEKYSKSNVEIHTFNQSQYPR-LCADDFVPLPCKGKTDKDG--- 186
N + H I++ Y P+ +DD +P D
Sbjct: 437 VKLENEYALHR---SIVDHY-------------NIPKTFDSDDLIPPY------LDQYFY 474
Query: 187 WYPPGH---------GDVFPSL-MNSGKLDA-LISQGKEYVFAANSDNLGAIVDLKI-LN 234
+ H +F + ++ L+ + + + + N + LK
Sbjct: 475 SHIGHHLKNIEHPERMTLFRMVFLDFRFLEQKIRHDSTAWNASGSILNT--LQQLKFYKP 532
Query: 235 HLIQNKNEYCMEVTPKTLADVKGGTLISYEGKV------QLLEIA-QVPDEHVNE--FKS 285
++ N +Y V + D L E + LL IA DE + E K
Sbjct: 533 YICDNDPKYERLV--NAILDF----LPKIEENLICSKYTDLLRIALMAEDEAIFEEAHKQ 586
Query: 286 IEK 288
+++
Sbjct: 587 VQR 589
|
| >1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 | Back alignment and structure |
|---|
Score = 46.4 bits (109), Expect = 2e-05
Identities = 65/490 (13%), Positives = 131/490 (26%), Gaps = 156/490 (31%)
Query: 6 EKLTQLKSAVAGLNQISENEKNGFIN---------LVARYLSGEAQH------VEW---S 47
+ +L+ A+ L KN I+ + + W
Sbjct: 135 QPYLKLRQALLELRP----AKNVLIDGVLGSGKTWVALDVCLSYKVQCKMDFKIFWLNLK 190
Query: 48 KIQTPTDKI--------------VVPCDSLAPVPEDPAETKKLLDKLVVLKLNGGLGTTM 93
+P + D + + + L +L+ K
Sbjct: 191 NCNSPETVLEMLQKLLYQIDPNWTSRSDHSSNIKLRIHSIQAELRRLLKSKPY------- 243
Query: 94 GCTGPKSVI---EVRNG-------------LTFLDLIVIQIENLNAKYGCNVPLLLMNSF 137
++ V+N LT V L+A ++ L +
Sbjct: 244 ----ENCLLVLLNVQNAKAWNAFNLSCKILLTTRFKQVTDF--LSAATTTHISLDHHSMT 297
Query: 138 NTHDDTSKIIEKYSKSNVEIHTFNQSQYPRLCADDFVPLPCK--GKTDKDGWYPPGHGDV 195
T D+ ++ KY + PR P ++ +DG D
Sbjct: 298 LTPDEVKSLLLKYLDCRPQ-------DLPRE-VLTTNPRRLSIIAESIRDG---LATWDN 346
Query: 196 FPSLMNSGKLDALISQG---------KEY-----VFAANSDNLGAIVDLKILNHLIQNKN 241
+ + N KL +I ++ VF ++ + +L+ + +
Sbjct: 347 WKHV-NCDKLTTIIESSLNVLEPAEYRKMFDRLSVFPPSAH-----IPTILLSLIWFDVI 400
Query: 242 EYCMEVTPKTLADVKGGTLISYEGKVQLLEIAQVPDEHVNEFKSIEKFKIFNTNNLWVNL 301
+ + V L +L+ + K + I P ++ +E N
Sbjct: 401 KSDVMVVVNKLHKY---SLVEKQPKESTISI---PSIYLELKVKLE------------NE 442
Query: 302 KAI-KRLVEADALKMEIIPN---PKEVDG----------IKVLQLETAAGAAIRFFDHAI 347
A+ + +V+ + + P +D + E + F D
Sbjct: 443 YALHRSIVDHYNIPKTFDSDDLIPPYLDQYFYSHIGHHLKNIEHPERMTLFRMVFLDF-- 500
Query: 348 GCNVHRSRFLPVK---ATSDLLLVQSDLYTLAD-----GFVTRNEARKNPANPTIELGPE 399
RFL K ++ S L TL ++ N+ P E
Sbjct: 501 -------RFLEQKIRHDSTAWNASGSILNTLQQLKFYKPYICDND-------PKYER--L 544
Query: 400 FKKVGNFLSR 409
+ +FL +
Sbjct: 545 VNAILDFLPK 554
|
Structure Templates Detected by HHsearch 
Original result of HHsearch against PDB70 database
ID ![]() | Alignment Graph ![]() | Length ![]() |
Definition ![]() |
Probability ![]() |
| Query | 469 | |||
| 3r3i_A | 528 | UTP--glucose-1-phosphate uridylyltransferase; ross | 100.0 | |
| 3gue_A | 484 | UTP-glucose-1-phosphate uridylyltransferase 2; pho | 100.0 | |
| 2icy_A | 469 | Probable UTP-glucose-1-phosphate uridylyltransfera | 100.0 | |
| 2i5k_A | 488 | UTP--glucose-1-phosphate uridylyltransferase; LEFT | 100.0 | |
| 2oeg_A | 505 | UTP-glucose-1-phosphate uridylyltransferase 2, put | 100.0 | |
| 3ogz_A | 630 | UDP-sugar pyrophosphorylase; LEFT handed beta heli | 100.0 | |
| 3oc9_A | 405 | UDP-N-acetylglucosamine pyrophosphorylase; structu | 100.0 | |
| 2yqc_A | 486 | UDP-N-acetylglucosamine pyrophosphorylase; uridine | 100.0 | |
| 1jv1_A | 505 | Glcnac1P uridyltransferase isoform 1: AGX1; nucleo | 100.0 | |
| 3st8_A | 501 | Bifunctional protein GLMU; acetyltransferase, pyro | 99.96 | |
| 4fce_A | 459 | Bifunctional protein GLMU; GLMU. csgid, niaid, str | 99.87 | |
| 2v0h_A | 456 | Bifunctional protein GLMU; cell WALL, magnesium, c | 99.85 | |
| 1hm9_A | 468 | GLMU, UDP-N-acetylglucosamine-1-phosphate uridyltr | 99.81 | |
| 1yp2_A | 451 | Glucose-1-phosphate adenylyltransferase small subu | 99.76 | |
| 3brk_X | 420 | Glucose-1-phosphate adenylyltransferase; ADP-gluco | 99.75 | |
| 2ggo_A | 401 | 401AA long hypothetical glucose-1-phosphate thymid | 99.66 | |
| 3oam_A | 252 | 3-deoxy-manno-octulosonate cytidylyltransferase; c | 99.61 | |
| 3pnn_A | 303 | Conserved domain protein; structural genomics, PSI | 99.6 | |
| 4evw_A | 255 | Nucleoside-diphosphate-sugar pyrophosphorylase; st | 99.57 | |
| 4ecm_A | 269 | Glucose-1-phosphate thymidylyltransferase; HET: DA | 99.54 | |
| 3juk_A | 281 | UDP-glucose pyrophosphorylase (GALU); transfer; HE | 99.52 | |
| 3k8d_A | 264 | 3-deoxy-manno-octulosonate cytidylyltransferase; K | 99.37 | |
| 1fxo_A | 293 | Glucose-1-phosphate thymidylyltransferase; rhamnos | 99.35 | |
| 1mc3_A | 296 | Glucose-1-phosphate thymidylyltransferase; glucose | 99.35 | |
| 1tzf_A | 259 | Glucose-1-phosphate cytidylyltransferase; nucleoti | 99.34 | |
| 3tqd_A | 256 | 3-deoxy-manno-octulosonate cytidylyltransferase; c | 99.33 | |
| 1lvw_A | 295 | Glucose-1-phosphate thymidylyltransferase; protein | 99.33 | |
| 4fcu_A | 253 | 3-deoxy-manno-octulosonate cytidylyltransferase; s | 99.32 | |
| 1h7e_A | 245 | 3-deoxy-manno-octulosonate cytidylyltransferase; n | 99.31 | |
| 1jyk_A | 254 | LICC protein, CTP:phosphocholine cytidylytransfera | 99.3 | |
| 2e3d_A | 302 | UTP--glucose-1-phosphate uridylyltransferase; UDP- | 99.3 | |
| 1vic_A | 262 | 3-deoxy-manno-octulosonate cytidylyltransferase; s | 99.27 | |
| 2y6p_A | 234 | 3-deoxy-manno-octulosonate cytidylyltransferase; l | 99.25 | |
| 2qh5_A | 308 | PMI, ALGA, mannose-6-phosphate isomerase; structur | 99.24 | |
| 3f1c_A | 246 | Putative 2-C-methyl-D-erythritol 4-phosphate cytid | 99.23 | |
| 2pa4_A | 323 | UTP-glucose-1-phosphate uridylyltransferase; phosp | 99.23 | |
| 2ux8_A | 297 | Glucose-1-phosphate uridylyltransferase; UGPG, GAL | 99.18 | |
| 1ezi_A | 228 | CMP-N-acetylneuraminic acid synthetase; homodimer, | 99.13 | |
| 1qwj_A | 229 | Cytidine monophospho-N-acetylneuraminic acid synth | 99.11 | |
| 2x65_A | 336 | Mannose-1-phosphate guanylyltransferase; nucleotid | 99.02 | |
| 3q80_A | 231 | 2-C-methyl-D-erythritol 4-phosphate cytidyltransf; | 99.01 | |
| 2cu2_A | 337 | Putative mannose-1-phosphate guanylyl transferase; | 98.9 | |
| 2xwl_A | 223 | 2-C-methyl-D-erythritol 4-phosphate cytidylyltran; | 98.88 | |
| 2xme_A | 232 | CTP-inositol-1-phosphate cytidylyltransferase; CDP | 98.87 | |
| 3rsb_A | 196 | Adenosylcobinamide-phosphate guanylyltransferase; | 98.77 | |
| 2vsh_A | 236 | TARI, 2-C-methyl-D-erythritol 4-phosphate cytidyly | 98.76 | |
| 1vgw_A | 231 | 4-diphosphocytidyl-2C-methyl-D-erythritol synthas; | 98.74 | |
| 2waw_A | 199 | MOBA relate protein; unknown function; HET: PGE; 1 | 98.63 | |
| 2dpw_A | 232 | Hypothetical protein TTHA0179; transferase, struct | 98.5 | |
| 2wee_A | 197 | MOBA-related protein; unknown function; 1.65A {Myc | 98.48 | |
| 3d5n_A | 197 | Q97W15_sulso; NESG, SSR125, structural genomics, P | 98.4 | |
| 2yc3_A | 228 | 2-C-methyl-D-erythritol 4-phosphate cytidylyltran | 98.28 | |
| 1e5k_A | 201 | Molybdopterin-guanine dinucleotide biosynthesis pr | 98.27 | |
| 3ngw_A | 208 | Molybdopterin-guanine dinucleotide biosynthesis P | 98.24 | |
| 1vpa_A | 234 | 2-C-methyl-D-erythritol 4-phosphate cytidylyltran; | 98.21 | |
| 1i52_A | 236 | 4-diphosphocytidyl-2-C-methylerythritol synthase; | 98.13 | |
| 2px7_A | 236 | 2-C-methyl-D-erythritol 4-phosphate cytidylyltrans | 97.93 | |
| 2e8b_A | 201 | Probable molybdopterin-guanine dinucleotide biosy | 97.9 | |
| 1w55_A | 371 | ISPD/ISPF bifunctional enzyme; biosynthetic pathwa | 97.78 | |
| 3ixc_A | 191 | Hexapeptide transferase family protein; niaid, ssg | 95.4 | |
| 3hjj_A | 190 | Maltose O-acetyltransferase; LEFT-handed beta-heli | 94.9 | |
| 2pig_A | 334 | Putative transferase; SCR6, NESG, YDCK, structural | 94.44 | |
| 3r1w_A | 189 | Carbonic anhydrase; beta-helix, lyase; 1.73A {Unid | 94.13 | |
| 1xhd_A | 173 | Putative acetyltransferase/acyltransferase; struct | 94.07 | |
| 1xhd_A | 173 | Putative acetyltransferase/acyltransferase; struct | 93.73 | |
| 3ixc_A | 191 | Hexapeptide transferase family protein; niaid, ssg | 93.02 | |
| 1v3w_A | 173 | Ferripyochelin binding protein; beta-helix, carbon | 93.0 | |
| 3tv0_A | 194 | Dynactin subunit 6; LEFT-handed beta-helix, ARP11, | 92.99 | |
| 3nz2_A | 195 | Hexapeptide-repeat containing-acetyltransferase; s | 92.69 | |
| 3kwd_A | 213 | Carbon dioxide concentrating mechanism protein; LE | 92.63 | |
| 3r3r_A | 187 | Ferripyochelin binding protein; structural genomic | 92.62 | |
| 3vbi_A | 205 | ANTD, galactoside O-acetyltransferase; anthrose, a | 92.49 | |
| 3r3r_A | 187 | Ferripyochelin binding protein; structural genomic | 92.2 | |
| 3ftt_A | 199 | Putative acetyltransferase sacol2570; galactoside | 92.2 | |
| 2p2o_A | 185 | Maltose transacetylase; GK1921, GKA001001921.1, ge | 91.98 | |
| 3kwd_A | 213 | Carbon dioxide concentrating mechanism protein; LE | 91.79 | |
| 2wlg_A | 215 | Polysialic acid O-acetyltransferase; enzyme, LEFT- | 91.73 | |
| 3jqy_B | 252 | NEUO, polysialic acid O-acetyltransferase; LEFT-ha | 91.68 | |
| 3fs8_A | 273 | QDTC; acetyltransferase, natural product, deoxysug | 91.66 | |
| 3mc4_A | 287 | WW/RSP5/WWP domain:bacterial transferase hexapept | 91.3 | |
| 3r0s_A | 266 | Acyl-[acyl-carrier-protein]--UDP-N-acetylglucosam | 91.03 | |
| 2ggo_A | 401 | 401AA long hypothetical glucose-1-phosphate thymid | 91.02 | |
| 1v3w_A | 173 | Ferripyochelin binding protein; beta-helix, carbon | 90.99 | |
| 3r8y_A | 240 | 2,3,4,5-tetrahydropyridine-2,6-dicarboxylate N- ac | 90.92 | |
| 1ssq_A | 267 | SAT, serine acetyltransferase; LEFT-handed paralle | 90.86 | |
| 3srt_A | 188 | Maltose O-acetyltransferase; structural genomics, | 90.6 | |
| 2v0h_A | 456 | Bifunctional protein GLMU; cell WALL, magnesium, c | 90.58 | |
| 1qre_A | 247 | Carbonic anhydrase; beta-helix, lyase; 1.46A {Meth | 90.57 | |
| 3f1x_A | 310 | Serine acetyltransferase; NESG X-RAY BVR62 A6KZB9 | 90.5 | |
| 3t57_A | 305 | UDP-N-acetylglucosamine O-acyltransferase domain- | 90.5 | |
| 3eh0_A | 341 | UDP-3-O-[3-hydroxymyristoyl] glucosamine N- acyltr | 90.48 | |
| 3r1w_A | 189 | Carbonic anhydrase; beta-helix, lyase; 1.73A {Unid | 90.3 | |
| 3hsq_A | 259 | Acyl-[acyl-carrier-protein]--UDP-N- acetylglucosam | 90.22 | |
| 4e79_A | 357 | UDP-3-O-acylglucosamine N-acyltransferase; lipopol | 90.19 | |
| 3t57_A | 305 | UDP-N-acetylglucosamine O-acyltransferase domain- | 90.11 | |
| 4eqy_A | 283 | Acyl-[acyl-carrier-protein]--UDP-N-acetylglucosam | 90.02 | |
| 3c8v_A | 496 | Putative acetyltransferase; YP_390128.1, structura | 89.76 | |
| 3mqg_A | 192 | Lipopolysaccharides biosynthesis acetyltransferas; | 89.51 | |
| 3r8y_A | 240 | 2,3,4,5-tetrahydropyridine-2,6-dicarboxylate N- ac | 89.34 | |
| 1qre_A | 247 | Carbonic anhydrase; beta-helix, lyase; 1.46A {Meth | 89.29 | |
| 4eqy_A | 283 | Acyl-[acyl-carrier-protein]--UDP-N-acetylglucosam | 89.29 | |
| 4e6u_A | 265 | Acyl-[acyl-carrier-protein]--UDP-N-acetylglucosam | 89.26 | |
| 4e6u_A | 265 | Acyl-[acyl-carrier-protein]--UDP-N-acetylglucosam | 88.66 | |
| 2pig_A | 334 | Putative transferase; SCR6, NESG, YDCK, structural | 88.48 | |
| 1j2z_A | 270 | Acyl-[acyl-carrier-protein]--UDP-N-acetylglucosam | 88.38 | |
| 3vbi_A | 205 | ANTD, galactoside O-acetyltransferase; anthrose, a | 88.34 | |
| 3q1x_A | 313 | Serine acetyltransferase; cysteine biosynthesis, L | 88.23 | |
| 3pmo_A | 372 | UDP-3-O-[3-hydroxymyristoyl] glucosamine N-acyltr; | 88.22 | |
| 4fce_A | 459 | Bifunctional protein GLMU; GLMU. csgid, niaid, str | 88.03 | |
| 3r0s_A | 266 | Acyl-[acyl-carrier-protein]--UDP-N-acetylglucosam | 87.97 | |
| 3srt_A | 188 | Maltose O-acetyltransferase; structural genomics, | 87.85 | |
| 2qia_A | 262 | UDP-N-acetylglucosamine acyltransferase; LEFT-hand | 87.84 | |
| 3ftt_A | 199 | Putative acetyltransferase sacol2570; galactoside | 87.65 | |
| 3fs8_A | 273 | QDTC; acetyltransferase, natural product, deoxysug | 87.5 | |
| 2qia_A | 262 | UDP-N-acetylglucosamine acyltransferase; LEFT-hand | 87.43 | |
| 2p2o_A | 185 | Maltose transacetylase; GK1921, GKA001001921.1, ge | 87.25 | |
| 1ocx_A | 182 | Maltose O-acetyltransferase; LEFT-handed parallel | 87.18 | |
| 1t3d_A | 289 | SAT, serine acetyltransferase; LEFT-handed-beta-he | 86.9 | |
| 2wlg_A | 215 | Polysialic acid O-acetyltransferase; enzyme, LEFT- | 86.85 | |
| 3pmo_A | 372 | UDP-3-O-[3-hydroxymyristoyl] glucosamine N-acyltr; | 86.72 | |
| 2iu8_A | 374 | LPXD, UDP-3-O-[3-hydroxymyristoyl] glucosamine N-a | 86.6 | |
| 3hsq_A | 259 | Acyl-[acyl-carrier-protein]--UDP-N- acetylglucosam | 86.2 | |
| 3brk_X | 420 | Glucose-1-phosphate adenylyltransferase; ADP-gluco | 86.1 | |
| 1krr_A | 203 | Galactoside O-acetyltransferase; LEFT-handed paral | 86.02 | |
| 1j2z_A | 270 | Acyl-[acyl-carrier-protein]--UDP-N-acetylglucosam | 85.66 | |
| 3c8v_A | 496 | Putative acetyltransferase; YP_390128.1, structura | 85.53 | |
| 1hm9_A | 468 | GLMU, UDP-N-acetylglucosamine-1-phosphate uridyltr | 85.4 | |
| 3tv0_A | 194 | Dynactin subunit 6; LEFT-handed beta-helix, ARP11, | 85.34 | |
| 1ocx_A | 182 | Maltose O-acetyltransferase; LEFT-handed parallel | 85.14 | |
| 3hjj_A | 190 | Maltose O-acetyltransferase; LEFT-handed beta-heli | 84.83 | |
| 3mc4_A | 287 | WW/RSP5/WWP domain:bacterial transferase hexapept | 84.81 | |
| 4e79_A | 357 | UDP-3-O-acylglucosamine N-acyltransferase; lipopol | 84.38 | |
| 3f1x_A | 310 | Serine acetyltransferase; NESG X-RAY BVR62 A6KZB9 | 84.35 | |
| 3nz2_A | 195 | Hexapeptide-repeat containing-acetyltransferase; s | 84.26 | |
| 1yp2_A | 451 | Glucose-1-phosphate adenylyltransferase small subu | 84.13 | |
| 2iu8_A | 374 | LPXD, UDP-3-O-[3-hydroxymyristoyl] glucosamine N-a | 83.84 | |
| 3jqy_B | 252 | NEUO, polysialic acid O-acetyltransferase; LEFT-ha | 83.45 | |
| 3eh0_A | 341 | UDP-3-O-[3-hydroxymyristoyl] glucosamine N- acyltr | 83.0 | |
| 4ea9_A | 220 | Perosamine N-acetyltransferase; beta helix, acetyl | 82.71 | |
| 3gos_A | 276 | 2,3,4,5-tetrahydropyridine-2,6-dicarboxylate N- su | 82.62 | |
| 3eg4_A | 304 | 2,3,4,5-tetrahydropyridine-2,6-dicarboxylate N- su | 80.86 | |
| 3bfp_A | 194 | Acetyltransferase; LEFT-handed beta helix, COA bin | 80.83 | |
| 4hur_A | 220 | Virginiamycin A acetyltransferase; structural geno | 80.41 |
| >3r3i_A UTP--glucose-1-phosphate uridylyltransferase; rossmann fold, beta barrel, nucleotidyltransferase; 3.57A {Homo sapiens} PDB: 3r2w_A | Back alignment and structure |
|---|
Probab=100.00 E-value=6.3e-111 Score=883.12 Aligned_cols=464 Identities=53% Similarity=0.898 Sum_probs=418.7
Q ss_pred HHHHHHHHHHh-hhhcccChhHHHHHHHHHHHHhhcCCCCccCCccccCCCCccccCCCCCCCCCChhhHHHhccceeEE
Q 012172 5 AEKLTQLKSAV-AGLNQISENEKNGFINLVARYLSGEAQHVEWSKIQTPTDKIVVPCDSLAPVPEDPAETKKLLDKLVVL 83 (469)
Q Consensus 5 ~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~g~~~l~k~avv 83 (469)
+++|.+|.+.+ +..++....+++.|.++|+||+++....++|++|+|++++.+.+|++++.++ ..+....+++|+|||
T Consensus 53 ~~~l~~~~~~l~~~~~~~~~~el~~f~~lf~r~l~~~~~~~~~~~i~p~p~~~~~~~~~l~~~~-~~~~~~~~l~kvavv 131 (528)
T 3r3i_A 53 KKELEKILTTASSHEFEHTKKDLDGFRKLFHRFLQEKGPSVDWGKIQRPPEDSIQPYEKIKARG-LPDNISSVLNKLVVV 131 (528)
T ss_dssp TSSSTTTSSSCCTTTTHHHHHHHHHHHHHHHHHHHC-------CCCCCCCTTTSEEHHHHTTSC-CCCSSCTTCTTEEEE
T ss_pred HHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHHHhhccCCCCHHHCcCCCHHHccCHhhcCCcc-ccchhhhhcCceEEE
Confidence 55677777777 4566678899999999999999988779999999999999999998886422 122346789999999
Q ss_pred EEcCCCCCcCCCCCCccccccCCCCchHHHHHHHHHHhhhhcCCcccEEEecCCCChHHHHHHHHHhcCCCCceEEEEec
Q 012172 84 KLNGGLGTTMGCTGPKSVIEVRNGLTFLDLIVIQIENLNAKYGCNVPLLLMNSFNTHDDTSKIIEKYSKSNVEIHTFNQS 163 (469)
Q Consensus 84 iLAGG~GTRmg~~~PK~l~~v~~gks~L~~~~~~i~~l~~~~~~~iplviMtS~~t~e~t~~~~~~~~g~~~~i~~f~Q~ 163 (469)
+||||||||||+++||++++|++|+||||++++|+++++++||+.||||||||++||++|++||++|.+.+.+|++|+|+
T Consensus 132 lLaGGlGTRLG~~~PK~~i~V~sgktflql~~eqI~~l~~~~g~~IPl~IMTS~~T~~~T~~~f~k~~~fg~~V~~F~Q~ 211 (528)
T 3r3i_A 132 KLNGGLGTSMGCKGPKSLIGVRNENTFLDLTVQQIEHLNKTYNTDVPLVLMNSFNTDEDTKKILQKYNHCRVKIYTFNQS 211 (528)
T ss_dssp EECCCBCTTTTCSSBGGGSEEETTEEHHHHHHHHHHHHHHHHTCCCCEEEEECTTTHHHHHSSCGGGTTSSCCEEEEECC
T ss_pred EeCCCCccccCCCCCccceecCCCCcHHHHHHHHHHHHHHHhCCCCCEEEEeccchhHHHHHHHHhcCccCCCeEEEEeC
Confidence 99999999999999999999999999999999999999999999999999999999999999999987666789999999
Q ss_pred CcceecCCCCcccCCCCC---CCCcccccCCCcccchhccccchHHHHHHcCCcEEEEEeCccccccccHHHHHHHHHc-
Q 012172 164 QYPRLCADDFVPLPCKGK---TDKDGWYPPGHGDVFPSLMNSGKLDALISQGKEYVFAANSDNLGAIVDLKILNHLIQN- 239 (469)
Q Consensus 164 ~~P~l~~~~~~~~~~~~~---~~~~~~~P~GhGd~~~~L~~sg~L~~l~~~G~~~v~v~n~DNL~~~~dp~~Lg~~~~~- 239 (469)
++||++.+|+++++++.+ +++++|+|+||||+|.+|+++|+|++|+++|++|+||+|+||+++.+||.+|||++.+
T Consensus 212 ~~P~i~~dg~l~l~~~~~~~~~~~~~~~P~GhGdiy~aL~~sGlLd~l~~~Gieyi~v~nvDNlga~vDp~~Lg~~~~~~ 291 (528)
T 3r3i_A 212 RYPRINKESLLPVAKDVSYSGENTEAWYPPGHGDIYASFYNSGLLDTFIGEGKEYIFVSNIDNLGATVDLYILNHLMNPP 291 (528)
T ss_dssp CBCCEETTTCCCC-------------CBCCBTTTHHHHHHHHSHHHHHHHTTCCEEEEEETTBTTCCCCHHHHHHHSSCS
T ss_pred CeeeEecCCceecccccccCCCcceeeCcCCChHHHHHHHHCChHHHHHhcCCEEEEEEccCCcccccCHHHHHHHHhcc
Confidence 999999999999987532 5789999999999999999999999999999999999999996677899999999998
Q ss_pred ---CCcceEEEeeeccCCCcceEEEEeCCeeEEEEeccCChhhhhhccccccccEEEEEeEEEeHHHHHHHHHhcccccc
Q 012172 240 ---KNEYCMEVTPKTLADVKGGTLISYEGKVQLLEIAQVPDEHVNEFKSIEKFKIFNTNNLWVNLKAIKRLVEADALKME 316 (469)
Q Consensus 240 ---~~~~~~~v~~k~~~~~~~G~iv~~~g~~~ivEy~~~~~e~~~~~~~~~~~~~~Nt~~~~~~l~~L~~~l~~~~~~lp 316 (469)
+++++|+|++|+.+++++|++|+++|++++|||+|+|++++++|++..+|++|||||+||++++|+++++...+.||
T Consensus 292 ~~~~~d~~~kVv~Kt~~dek~Gvl~~~dGk~~vvEyseip~e~~~~~~g~~~f~~~Ntnnlw~~L~~L~~v~~~~~l~Lp 371 (528)
T 3r3i_A 292 NGKRCEFVMEVTNKTRADVKGGTLTQYEGKLRLVEIAQVPKAHVDEFKSVSKFKIFNTNNLWISLAAVKRLQEQNAIDME 371 (528)
T ss_dssp SSCCCSEEEEECCCCTTCCSSCEEECSSSSCEEECTTSSCGGGTTTSSCSSSCCCCEEEEEEEEHHHHHHHHHTTCCCCC
T ss_pred cccCCcEEEEEeEccccCCcccEEEEECCeEEEEEecCCChhHhhccCCcccCCeEEEEEEEEEHHHHHHHHHhCCCCCC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999998889999
Q ss_pred cccCCCcCC-CcceehhHHHhhhHhhhcccceeEeecCccccccCCchhHHHHHHHHHHhhcCceeecCCccCCCCCeEE
Q 012172 317 IIPNPKEVD-GIKVLQLETAAGAAIRFFDHAIGCNVHRSRFLPVKATSDLLLVQSDLYTLADGFVTRNEARKNPANPTIE 395 (469)
Q Consensus 317 ~~~n~K~~~-g~~~iqle~~~~d~~~~~~~~~~v~v~r~eF~pVKn~~dL~~~~~~~~~l~~g~l~~~~~r~~~~~p~V~ 395 (469)
+|+|+|+++ +++++|+|+++||+|++|+++.+++|+|+||+||||++||++++||+|.+.+|.+.++|+|.++..|.|.
T Consensus 372 ~ivn~K~vd~~~~viqlEt~igd~i~~f~~~~~i~VpR~rF~PvKn~sdLll~~Sdly~l~~g~l~~~~~r~~~~~P~v~ 451 (528)
T 3r3i_A 372 IIVNAKTLDGGLNVIQLETAVGAAIKSFENSLGINVPRSRFLPVKTTSDLLLVMSNLYSLNAGSLTMSEKREFPTVPLVK 451 (528)
T ss_dssp CEEEEECCSSSSCEEEEEBCSTTCSTTSSSCCCEECCGGGCCBCCSHHHHHHHHSTTSEEETTEEECCSSCSSCCCCEEE
T ss_pred ceecCcccCCCCCEEEeHHHHHHHHHhccCcEEEEEehHHcccccchHHHHHHhcceeEeeCCeEEecccccCCCCCEEE
Confidence 999999997 7889999999999999999999999999999999999999999999999999999999999878889999
Q ss_pred ECCCcccccccccccccCCcccccCceEEEeeEEECCCcEEeeeEEEEecCCCceeeCCCCeeecceecCCCCC
Q 012172 396 LGPEFKKVGNFLSRFKSIPSIIELDSLKVTGDVWFGANITLKGKVTIAAKSGEKLEIPDGAVLENKEINGPGDL 469 (469)
Q Consensus 396 l~~~~~~~~~~~~~i~~~p~~~~~~~l~v~G~v~fg~~V~i~g~~~I~~~~~~~~~I~~~s~le~~~v~~~~~~ 469 (469)
|+|.|+++++|++||+++|||+++++|+|+|||+||+||+++|+|+|.+++|.+++||+|++|||++|.+||||
T Consensus 452 L~~~~~~v~~f~~rf~~iP~l~~~~~LtV~Gdv~fg~~v~l~G~v~i~~~~g~~~~ip~g~~len~~v~g~~~~ 525 (528)
T 3r3i_A 452 LGSSFTKVQDYLRRFESIPDMLELDHLTVSGDVTFGKNVSLKGTVIIIANHGDRIDIPPGAVLENKIVSGNLRI 525 (528)
T ss_dssp ECTTSCSHHHHHHHCSSCCEEEEEEEEEEESEEECCTTCEEEEEEEEECCTTCEEECCTTCEEEEEEEC-----
T ss_pred eCcccCcHHHHHHhCCCCCCcccCCEEEEecceEECCCcEEEEEEEEEcCCCCceecCCCCEEeccEEeccccc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999997
|
| >3gue_A UTP-glucose-1-phosphate uridylyltransferase 2; phosphatase, UDP, structural GE structural genomics consortium, SGC; HET: UPG PG4; 1.92A {Trypanosoma brucei} | Back alignment and structure |
|---|
Probab=100.00 E-value=1e-104 Score=830.78 Aligned_cols=436 Identities=38% Similarity=0.618 Sum_probs=411.1
Q ss_pred cChhHHHHHHHHHHHHhhcCCCCccCCccccCCCCccccCCCCCCCCCChhhHHHhccceeEEEEcCCCCCcCCCCCCcc
Q 012172 21 ISENEKNGFINLVARYLSGEAQHVEWSKIQTPTDKIVVPCDSLAPVPEDPAETKKLLDKLVVLKLNGGLGTTMGCTGPKS 100 (469)
Q Consensus 21 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~g~~~l~k~avviLAGG~GTRmg~~~PK~ 100 (469)
..+.+++.|.++|++|++++++.|+|++|+|+. ++++|+++... . .|+++|+|+|||+||||||||||+++||+
T Consensus 24 ~~~~~~~~f~~~~~~~~~~~~~~i~~~~i~p~~--~~~~~~~l~~~---~-~G~~~L~kvavvlLaGGlGTRLG~~~pKg 97 (484)
T 3gue_A 24 VEEKCIHIFLIQHALVRKGETGYIPEKSISPVE--SLPFLQGIETK---G-ENTALLRQAVVLKLNGGLGTGMGLNGPKS 97 (484)
T ss_dssp CCHHHHHHHHHHHHHHHTTCCCCCCGGGCEECC--CCCBHHHHCCS---S-CCHHHHTTEEEEEEECCCCGGGTCSSCGG
T ss_pred CCHHHHHHHHHHHHHHhcCCCCccCHhhCCChh--ccCChhhcCCc---h-HHHHHHhhcEEEEEcCCcccccCCCCCce
Confidence 778999999999999999999999999999987 67888888631 2 69999999999999999999999999999
Q ss_pred ccccCCCCchHHHHHHHHHHhhhhcCCcccEEEecCCCChHHHHHHHHHhc--C-CCCceEEEEecCcceecCCCCcccC
Q 012172 101 VIEVRNGLTFLDLIVIQIENLNAKYGCNVPLLLMNSFNTHDDTSKIIEKYS--K-SNVEIHTFNQSQYPRLCADDFVPLP 177 (469)
Q Consensus 101 l~~v~~gks~L~~~~~~i~~l~~~~~~~iplviMtS~~t~e~t~~~~~~~~--g-~~~~i~~f~Q~~~P~l~~~~~~~~~ 177 (469)
++++.+|+||||++++|+++++++|++.|||+||||+.||++|++||++|. | .+.+|++|+|+++||++.+|+.++.
T Consensus 98 ~~~v~sgksflql~~eqI~~l~~~~~~~iPl~IMTS~~T~~~T~~~~~k~~~Fgl~~~~v~~F~Q~~~P~i~~dg~~~i~ 177 (484)
T 3gue_A 98 LLQVKNGQTFLDFTALQLEHFRQVRNCNVPFMLMNSFSTSGETKNFLRKYPTLYEVFDSDIELMQNRVPKIRQDNFFPVT 177 (484)
T ss_dssp GSEEETTEEHHHHHHHHHHHHHHHHTCCCCEEEEECTTTHHHHHHHGGGCHHHHTTCCCCCEEECCCEECEETTTCCBCC
T ss_pred eeecCCCCcHHHHHHHHHHHHHHHcCCCceEEEECCcchhHHHHHHHHhCcccCCCccceEEEEeCceeeEecCCCceee
Confidence 999999999999999999999999999999999999999999999999854 5 3568999999999999999987776
Q ss_pred CCCCCCCcccccCCCcccchhccccchHHHHHHcCCcEEEEEeCccccccccHHHHHHHHHcCCcceEEEeeeccCCCcc
Q 012172 178 CKGKTDKDGWYPPGHGDVFPSLMNSGKLDALISQGKEYVFAANSDNLGAIVDLKILNHLIQNKNEYCMEVTPKTLADVKG 257 (469)
Q Consensus 178 ~~~~~~~~~~~P~GhGd~~~~L~~sg~L~~l~~~G~~~v~v~n~DNL~~~~dp~~Lg~~~~~~~~~~~~v~~k~~~~~~~ 257 (469)
++. +++++|+|+||||+|.+|+++|+|++|+++|++|+||+|+|||++++||.+|||+++++++++++|++|+.+++++
T Consensus 178 ~~~-~~~i~~~P~GhGdiy~aL~~sGiLd~l~~~Gieyi~v~~vDNL~a~~Dp~~lG~~~~~~~d~~~kvv~Kt~~dekg 256 (484)
T 3gue_A 178 YEA-DPTCEWVPPGHGDVYTVLYSSGKLDYLLGKGYRYMFISNGDNLGATLDVRLLDYMHEKQLGFLMEVCRRTESDKKG 256 (484)
T ss_dssp CTT-CGGGGEECCCGGGHHHHHHHHSHHHHHHHTTCCEEEEEETTCTTCCCCHHHHHHHHHTTCSEEEEEEECCTTCCSS
T ss_pred cCC-CCceeeccCCchHHHHHHHhCCcHHHHHHcCCEEEEEEcCCCcccccCHHHHHHHHhcCCCEEEEEEECCCCCCce
Confidence 543 3689999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred eEEEEe----------CCeeEEEEeccCChhhhhhccccccccEEEEEeEEEeHHHHHHHHHhc--ccccccccCCCcCC
Q 012172 258 GTLISY----------EGKVQLLEIAQVPDEHVNEFKSIEKFKIFNTNNLWVNLKAIKRLVEAD--ALKMEIIPNPKEVD 325 (469)
Q Consensus 258 G~iv~~----------~g~~~ivEy~~~~~e~~~~~~~~~~~~~~Nt~~~~~~l~~L~~~l~~~--~~~lp~~~n~K~~~ 325 (469)
|++|++ +|+++++||+|+|++++++|++..++.+|||||+|+++.+|++++++. .+.||+|+|+|+++
T Consensus 257 G~l~~~~~~~~~~~~~dG~~~vvEyseip~e~~~~f~~~~g~~~FNtnNi~~~l~~l~~~l~~~~g~~~Lp~~vn~K~id 336 (484)
T 3gue_A 257 GHLAYKDVIDETTGQTRRRFVLRESAQCPKEDEDSFQNIAKHCFFNTNNIWINLMELKKMMDEQLGVLRLPVMRNPKTVN 336 (484)
T ss_dssp EEEEEEC--------CCCEEEEEEGGGSCGGGHHHHTCTTTSCEEEEEEEEEEHHHHHHHHHHTTTCCCCCCEEEEEESS
T ss_pred eEEEEEccccccccCCCCCEEEEEeccCCHHHHhhhcCCCCceEeEeeeEEEEHHHHHHHHHhccCcCCCCcEeccceec
Confidence 999998 999999999999999999998888999999999999999999999975 57899999999996
Q ss_pred -----CcceehhHHHhhhHhhhcccceeEeecCccccccCCchhHHHHHHHHHHhhc-CceeecCCccCCCCCeEEECCC
Q 012172 326 -----GIKVLQLETAAGAAIRFFDHAIGCNVHRSRFLPVKATSDLLLVQSDLYTLAD-GFVTRNEARKNPANPTIELGPE 399 (469)
Q Consensus 326 -----g~~~iqle~~~~d~~~~~~~~~~v~v~r~eF~pVKn~~dL~~~~~~~~~l~~-g~l~~~~~r~~~~~p~V~l~~~ 399 (469)
.++++|||+|+||+|++|+++.+++|+|+||+||||++||+++|||+|.+.+ |.+..+|+|. +..|.|.|+|.
T Consensus 337 ~~k~~~~~~iqlE~~~~d~~~~~~~~~~ieV~R~rF~PvKn~sdLl~~~Sdly~l~~~~~l~~~~~~~-~~~P~v~L~~~ 415 (484)
T 3gue_A 337 PQDSQSTKVYQLEVAMGAAISLFDRSEAVVVPRERFAPVKTCSDLLALRSDAYQVTEDQRLVLCEERN-GKPPAIDLDGE 415 (484)
T ss_dssp TTCTTSCEEEEEECCGGGGGTTSSSEEEEECCGGGCCCCSSHHHHHHHHSTTEEECTTSCEEECGGGT-TCCCEEEECTT
T ss_pred CCCCCCCCEeehHHHHHHHHHhCCccEEEEEChhhccccccchHHHHHhhhceeccCCceEEeccccC-CCCCeEEECch
Confidence 3679999999999999999999999999999999999999999999999998 4899999995 57899999875
Q ss_pred -ccccccccccccc-CCcccccCceEEEeeEEECCCcEEeeeEEEEecCCCceeeCCCCeeecceec
Q 012172 400 -FKKVGNFLSRFKS-IPSIIELDSLKVTGDVWFGANITLKGKVTIAAKSGEKLEIPDGAVLENKEIN 464 (469)
Q Consensus 400 -~~~~~~~~~~i~~-~p~~~~~~~l~v~G~v~fg~~V~i~g~~~I~~~~~~~~~I~~~s~le~~~v~ 464 (469)
|+++++|++||++ +|||+++++|+|+|||+||+||+++|+|+|.|++|++++||+|++|||++|.
T Consensus 416 ~~~~v~~f~~rf~~giPsl~~~~~L~V~Gdv~fg~~v~l~G~v~i~~~~g~~~~ip~g~~l~~~~~~ 482 (484)
T 3gue_A 416 HYKMIDGFEKLVKGGVPSLRQCTSLTVRGLVEFGADVSVRGNVVIKNLKEEPLIIGSGRVLDNEVVV 482 (484)
T ss_dssp TSSSHHHHHHHHTTCCCBCTTEEEEEEESSEEECTTCEEEEEEEEEECSSSCEEECTTCEEESCEEE
T ss_pred hcCcHHHHHHhcCCCCCChhhCCEEEEecceEECCCcEEEEEEEEEcCCCCeeecCCCCEecceecC
Confidence 8999999999988 9999999999999999999999999999999999999999999999999985
|
| >2i5k_A UTP--glucose-1-phosphate uridylyltransferase; LEFT-handed beta-helix, SGC domain; 3.10A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=100.00 E-value=2.4e-95 Score=770.68 Aligned_cols=460 Identities=55% Similarity=0.896 Sum_probs=423.4
Q ss_pred HHHHHHHHHHhh---hhcccChhHHHHHHHHHHHHhhcC--CCCccCCccccCCCCccccCCCCCCCCCChhhHHHhccc
Q 012172 5 AEKLTQLKSAVA---GLNQISENEKNGFINLVARYLSGE--AQHVEWSKIQTPTDKIVVPCDSLAPVPEDPAETKKLLDK 79 (469)
Q Consensus 5 ~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~g~~~l~k 79 (469)
+++|++|.++++ ..++.+..+++.|.++|++|+++. .+.++|++|+|++++.+.+|+++..+ +.|..++++
T Consensus 17 ~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~p~~~~~~~~~~~~~~~----~~~~~~~~k 92 (488)
T 2i5k_A 17 RNALNKLADSSKLDDAARAKFENELDSFFTLFRRYLVEKSSRTTLEWDKIKSPNPDEVVKYEIISQQ----PENVSNLSK 92 (488)
T ss_dssp HHHTTCCC--------CCSCTHHHHHHHHHHHHHHHHHHHSCCSCCGGGEECCCTTTEEEHHHHHSS----CCCSTTGGG
T ss_pred HHHHHHHHhhcCCCHHHHHHHHHHHHHHHHHHHHHHhcccccCCCcccccccCChhcccChhhcccc----hhhhhhcCC
Confidence 566666666654 233568899999999999999774 46999999999998888888776521 137788999
Q ss_pred eeEEEEcCCCCCcCCCCCCccccccCCCCchHHHHHHHHHHhhhhcCCcccEEEecCCCChHHHHHHHHHhcCCCCceEE
Q 012172 80 LVVLKLNGGLGTTMGCTGPKSVIEVRNGLTFLDLIVIQIENLNAKYGCNVPLLLMNSFNTHDDTSKIIEKYSKSNVEIHT 159 (469)
Q Consensus 80 ~avviLAGG~GTRmg~~~PK~l~~v~~gks~L~~~~~~i~~l~~~~~~~iplviMtS~~t~e~t~~~~~~~~g~~~~i~~ 159 (469)
++||+||||+|||||++.||+|++|.+|||||||+++++++++.++|+.|||+||||++|++.|+++|++|...+.+|.|
T Consensus 93 ~avViLAGG~GTRmgs~~PK~l~~V~~gk~~Le~~i~~i~~l~~~~G~~Ip~vImts~~t~e~t~~~~~~~~~fg~~i~~ 172 (488)
T 2i5k_A 93 LAVLKLNGGLGTSMGCVGPKSVIEVREGNTFLDLSVRQIEYLNRQYDSDVPLLLMNSFNTDKDTEHLIKKYSANRIRIRS 172 (488)
T ss_dssp EEEEEECCCBSGGGTCCSBSTTSCCBTTBCHHHHHHHHHHHHHHHHTCCCEEEEECCTTTHHHHHHHHGGGCSSSCEEEE
T ss_pred ceEEEEcCCCcccCCCCCCccccccCCCCcHHHHHHHHHHHhHHhcCCCccEEEEECCCCHHHHHHHHHhccccCceEEE
Confidence 99999999999999999999999997799999999999999999999999999999999999999999987654557999
Q ss_pred EEecCcceecCCCCcccCCCCCCCCcccccCCCcccchhccccchHHHHHHcCCcEEEEEeCccccccccHHHHHHHHHc
Q 012172 160 FNQSQYPRLCADDFVPLPCKGKTDKDGWYPPGHGDVFPSLMNSGKLDALISQGKEYVFAANSDNLGAIVDLKILNHLIQN 239 (469)
Q Consensus 160 f~Q~~~P~l~~~~~~~~~~~~~~~~~~~~P~GhGd~~~~L~~sg~L~~l~~~G~~~v~v~n~DNL~~~~dp~~Lg~~~~~ 239 (469)
|.|+++||++.+|++++.++.++++++|+|+||||+|.+|..+|+|+.|.++|.+|++|+|+|||++..||.+||++.++
T Consensus 173 f~Q~~~P~i~~d~~~~l~~~~~~~~~~~~P~GtGga~~~L~~sg~l~~l~~~g~~~v~V~ngDnL~~~~d~~~L~~~~~~ 252 (488)
T 2i5k_A 173 FNQSRFPRVYKDSLLPVPTEYDSPLDAWYPPGHGDLFESLHVSGELDALIAQGREILFVSNGDNLGATVDLKILNHMIET 252 (488)
T ss_dssp ECCCCEECEETTTCCBSCSSSSSCTTSEECCCGGGHHHHHHHHTHHHHHHHTTCCEEEEECTTBSSCCCCHHHHHHHHHS
T ss_pred EEeCccceEccccceeeccCCCCCceeeecCCCchhhhhhhhcCcHHHHHhcCCCEEEEEeCCcCCCcccHHHHHHHHhc
Confidence 99999999999999999988766789999999999999999999999999999999999999999999999999999999
Q ss_pred CCcceEEEeeeccCCCcceEEEEeCCeeEEEEeccCChhhhhhccccccccEEEEEeEEEeHHHHHHHHHhccccccccc
Q 012172 240 KNEYCMEVTPKTLADVKGGTLISYEGKVQLLEIAQVPDEHVNEFKSIEKFKIFNTNNLWVNLKAIKRLVEADALKMEIIP 319 (469)
Q Consensus 240 ~~~~~~~v~~k~~~~~~~G~iv~~~g~~~ivEy~~~~~e~~~~~~~~~~~~~~Nt~~~~~~l~~L~~~l~~~~~~lp~~~ 319 (469)
+++++++++++++++++||+|++++|+++||||+|++++++++|++...++++|||+|||++++|++++++....||+|+
T Consensus 253 ~a~~t~~v~~~~~p~~~yG~Iv~~dG~~~iVE~~e~~~e~~~~~~~~~~~~~~Ntgi~~f~~~~L~~~l~~~~~~lp~~v 332 (488)
T 2i5k_A 253 GAEYIMELTDKTRADVKGGTLISYDGQVRLLEVAQVPKEHIDEFKNIRKFTNFNTNNLWINLKAVKRLIESSNLEMEIIP 332 (488)
T ss_dssp CCSEEEEEEECCGGGSSSCEEEEETTEEEEECGGGSCTTSHHHHTCTTTCCEEEEEEEEEEHHHHHHHHHTTCCCCCCBC
T ss_pred CCcEEEEEEEecCCCCceeEEEEECCcEEEEEeccCCHHHHhhcccccccCEEEEEEEEEeHHHHHHHHhhccCCCccee
Confidence 99999999999999999999999999999999999999998888888899999999999999999999998889999999
Q ss_pred CCCcCC----CcceehhHHHhhhHhhhcccceeEeecCccccccCCchhHHHHHHHHHHhhcCceeecCCccCCCCCeEE
Q 012172 320 NPKEVD----GIKVLQLETAAGAAIRFFDHAIGCNVHRSRFLPVKATSDLLLVQSDLYTLADGFVTRNEARKNPANPTIE 395 (469)
Q Consensus 320 n~K~~~----g~~~iqle~~~~d~~~~~~~~~~v~v~r~eF~pVKn~~dL~~~~~~~~~l~~g~l~~~~~r~~~~~p~V~ 395 (469)
|+|+++ +.+++|||++|||++++|+++.+++|+|+||+||||+++|+++++++|.+++|++..++.++ ...|.|.
T Consensus 333 ~~K~i~~~~~~~~~~qlE~~~~d~~~~~~~~~~~~V~R~~F~PvKn~~~ll~~~~~~~~~~~g~~~~~~~~~-e~~P~v~ 411 (488)
T 2i5k_A 333 NQKTITRDGHEINVLQLETACGAAIRHFDGAHGVVVPRSRFLPVKTCSDLLLVKSDLFRLEHGSLKLDPSRF-GPNPLIK 411 (488)
T ss_dssp CEECCCC-----CEECCBCCGGGGGGGSSSCEEEEECGGGCCBCCSHHHHHHHTSTTEEEETTEEEECTTCC-SSCCEEE
T ss_pred cCccccCCCCCCceEEeeehhhhHHhhccCceEEEecccccccccCCccHHHHHHHHHHHhcCcEeecCCcC-CCCCeEE
Confidence 999997 67899999999999999999999999999999999999999999999999999999999884 5789999
Q ss_pred ECCCcccccccccccccCCcccccCceEEEeeEEECCCcEEeeeEEEEecCCCceeeCCCCeeecceecCCCCC
Q 012172 396 LGPEFKKVGNFLSRFKSIPSIIELDSLKVTGDVWFGANITLKGKVTIAAKSGEKLEIPDGAVLENKEINGPGDL 469 (469)
Q Consensus 396 l~~~~~~~~~~~~~i~~~p~~~~~~~l~v~G~v~fg~~V~i~g~~~I~~~~~~~~~I~~~s~le~~~v~~~~~~ 469 (469)
+++.|+++++|++||+++|+|+++++|+|+|||+||+||+++|+|+|.|++|++++||+|++|||+.|.+||||
T Consensus 412 ~~~~~~~~~~~~~rf~~~p~i~~~~~l~v~Gdv~fg~~v~l~G~v~i~a~~~~~~~ip~g~~l~n~~~~~~~~~ 485 (488)
T 2i5k_A 412 LGSHFKKVSGFNARIPHIPKIVELDHLTITGNVFLGKDVTLRGTVIIVCSDGHKIDIPNGSILENVVVTGNLQI 485 (488)
T ss_dssp ECGGGSSHHHHHHHCSSCCBCTTEEEEEEESSEEECTTCEEEEEEEEECCTTCCEEECTTCEEEEEEEEEEEEE
T ss_pred ECCcccchhhHHhhcCCCccccccceEEEEeeeEEcCCcEEEEEEEEEcCCCCeEEeCCCCEEecceeeccccc
Confidence 98889999999999999999999999999999999999999999999999999999999999999999999986
|
| >2oeg_A UTP-glucose-1-phosphate uridylyltransferase 2, putative; rossmann-fold, beta-helix, pyrophosphorylase; HET: UPG; 2.30A {Leishmania major} PDB: 2oef_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=8.6e-92 Score=742.83 Aligned_cols=448 Identities=35% Similarity=0.550 Sum_probs=410.6
Q ss_pred HHHHHHHhhhhcccChhHHHHHHHHHHHHhhcCCCCccCCccccCCCCccccCCCCCCCCCChhhHHHhccceeEEEEcC
Q 012172 8 LTQLKSAVAGLNQISENEKNGFINLVARYLSGEAQHVEWSKIQTPTDKIVVPCDSLAPVPEDPAETKKLLDKLVVLKLNG 87 (469)
Q Consensus 8 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~g~~~l~k~avviLAG 87 (469)
+++..+.+ ......+.+++.|.++|++|++++++.++|+.|+|+ +.+.+|++++. +.|+++|++++||+|||
T Consensus 12 ~~~~~~~~-~~~~~~~~~~~~f~~~~~~~~~~~~~~i~~~~i~p~--~~~~~~~~~~~-----~~g~~~l~k~avViLAG 83 (505)
T 2oeg_A 12 AQACVKKM-RDAKVNEACIRTFIAQHVMVSKGETGSIPDSAIMPV--DSLDALDSLTI-----ECDNAVLQSTVVLKLNG 83 (505)
T ss_dssp HHHHHHHH-HHTTCCHHHHHHHHHHHHHHHTTCCCCCCGGGCBCC--CCCCBGGGCCC-----CCCHHHHHTEEEEEEEC
T ss_pred HHHHHHHH-HHcCCChHHHHHHHHHHHHHHhcCCCCcChhhcCCh--hhccChhhcch-----hHHHHHHhcceEEEEcC
Confidence 44444444 345588999999999999999887789999999998 66777877752 37899999999999999
Q ss_pred CCCCcCCCCCCccccccCCCCchHHHHHHHHHHhhhhcCCcccEEEecCCCChHHHHHHHH-H--hcC-CCCceEEEEec
Q 012172 88 GLGTTMGCTGPKSVIEVRNGLTFLDLIVIQIENLNAKYGCNVPLLLMNSFNTHDDTSKIIE-K--YSK-SNVEIHTFNQS 163 (469)
Q Consensus 88 G~GTRmg~~~PK~l~~v~~gks~L~~~~~~i~~l~~~~~~~iplviMtS~~t~e~t~~~~~-~--~~g-~~~~i~~f~Q~ 163 (469)
|+|||||++.||+|+||.+|+||||++++++++++.+||+.|||+||||++|++.|++||+ + ++| .+.+|.+|.|+
T Consensus 84 GlGTRLg~~~PK~llpV~~gk~fLe~~ie~l~~~~~~~g~~ip~viMtS~~t~e~t~~~f~~~~~~fGl~~~~I~~f~Q~ 163 (505)
T 2oeg_A 84 GLGTGMGLCDAKTLLEVKDGKTFLDFTALQVQYLRQHCSEHLRFMLMDSFNTSASTKSFLKARYPWLYQVFDSEVELMQN 163 (505)
T ss_dssp CCCGGGTCCSCGGGSEEETTEEHHHHHHHHHHHHHHHTCTTCEEEEEECHHHHHHHHHHHHHHCHHHHTTCCCCCEEECC
T ss_pred CcccccCCCCCCcccccCCCCcHHHHHHHHHHHHHHhcCCCcCEEEEeCCCCHHHHHHHHhhhhhccCCCccceEEEEEc
Confidence 9999999999999999956999999999999999999999999999999999999999999 6 445 45689999999
Q ss_pred CcceecCCCCcccCCCCCCCCcccccCCCcccchhccccchHHHHHHcCCcEEEEEeCccccccccHHHHHHHHHcCCcc
Q 012172 164 QYPRLCADDFVPLPCKGKTDKDGWYPPGHGDVFPSLMNSGKLDALISQGKEYVFAANSDNLGAIVDLKILNHLIQNKNEY 243 (469)
Q Consensus 164 ~~P~l~~~~~~~~~~~~~~~~~~~~P~GhGd~~~~L~~sg~L~~l~~~G~~~v~v~n~DNL~~~~dp~~Lg~~~~~~~~~ 243 (469)
++|+++.+|..++.++.+ +.++|+|+||||+|.+|+++|+|++|+++|++|++|+|+|||++.+||.+|||+.++++++
T Consensus 164 ~~P~~~~~~~~~i~~~~~-~~~e~~P~G~Gg~~~aL~~sGlL~~l~~~G~e~i~V~N~DNL~~~~D~~llg~~~~~~ad~ 242 (505)
T 2oeg_A 164 QVPKILQDTLEPAAWAEN-PAYEWAPPGHGDIYTALYGSGKLQELVEQGYRYMFVSNGDNLGATIDKRVLAYMEKEKIDF 242 (505)
T ss_dssp CEECEETTTCCBCCCTTC-GGGGEECCCTTHHHHHHHHTTHHHHHHHTTCCEEEEECTTCTTCCCCHHHHHHHHHHTCSE
T ss_pred CEEeEecCCCceeecCCC-CccccCcCCchHHHHHHHhcChHHHHHhcCCCEEEEEECCccccccCHHHHHHHHhcCCcE
Confidence 999999999776644433 4599999999999999999999999999999999999999999999999999999999999
Q ss_pred eEEEeeeccCCCcceEEEE-------eCCe-------eEEEEeccCChhhhhhccccccccEEEEEeEEEeHHHHHHHHH
Q 012172 244 CMEVTPKTLADVKGGTLIS-------YEGK-------VQLLEIAQVPDEHVNEFKSIEKFKIFNTNNLWVNLKAIKRLVE 309 (469)
Q Consensus 244 ~~~v~~k~~~~~~~G~iv~-------~~g~-------~~ivEy~~~~~e~~~~~~~~~~~~~~Nt~~~~~~l~~L~~~l~ 309 (469)
+++|++|+.++++||+++. ++|+ ++++||+|+|+++++++++...|++|||||+||++++|+++++
T Consensus 243 ~~~v~~k~~~d~~~Gvl~~~~~~~~~~dg~~nvEyn~~~llEyse~p~e~~~~~~g~~~f~~~Ninn~~~~l~~l~~~~~ 322 (505)
T 2oeg_A 243 LMEVCRRTESDKKGGHLARQTVYVKGKDGQPDAEKRVLLLRESAQCPKADMESFQDINKYSFFNTNNLWIRLPVLLETMQ 322 (505)
T ss_dssp EEEEEECCTTCCSSEEEEEEEEEECCSSSCCCEEEEEEEEEEGGGSCGGGHHHHHCTTTTCEEEEEEEEEEHHHHHHHHH
T ss_pred EEEEEEecCCccceeEEEEecccccccCCccccccCceeEEEeccCChhhhhcccCccccCeeEEEEEEEEHHHHHHHHh
Confidence 9999999999999999998 7899 9999999999999999988999999999999999999999999
Q ss_pred h--cccccccccCCCcCC-----CcceehhHHHhhhHhhhcccceeEeecCccccccCCchhHHHHHHHHHHhhc-Ccee
Q 012172 310 A--DALKMEIIPNPKEVD-----GIKVLQLETAAGAAIRFFDHAIGCNVHRSRFLPVKATSDLLLVQSDLYTLAD-GFVT 381 (469)
Q Consensus 310 ~--~~~~lp~~~n~K~~~-----g~~~iqle~~~~d~~~~~~~~~~v~v~r~eF~pVKn~~dL~~~~~~~~~l~~-g~l~ 381 (469)
+ ..+.||+|+|.|+++ +++++|||++|||++++|+++.+++|+|+||+||||++|++++|+|+|.+++ +.+.
T Consensus 323 ~~~~~~~Lp~~vn~K~i~~~d~~~~~~~qlE~~~~d~~~~~~~~~~~~V~R~~FsPvKn~~dl~~~~sdly~~~~~~~~~ 402 (505)
T 2oeg_A 323 EHGGTLPLPVIRNEKTVDSSNSASPKVYQLETAMGAAIAMFESASAIVVPRSRFAPVKTCADLLALRSDAYVVTDDFRLV 402 (505)
T ss_dssp HTTSSCCCCCEEEEEESSSSCTTSCEEEEEECCGGGGGGSCTTCEEEECCGGGCCCCSSHHHHHHHHSTTEEECTTCCEE
T ss_pred hhcCccCCcceecccccCCCCCCCCCeEEEeEHHHHHHHhcCcceEEEeccceeecccCCCCHHHHHHHHHhhcCCceEE
Confidence 7 457899999999997 5679999999999999999999999999999999999999999999999998 6666
Q ss_pred ecCCccCCCCCeEEECCC-ccccccccccccc-CCcccccCceEEEeeEEECCCcEEeeeEEEEec-CCCceeeCCCCee
Q 012172 382 RNEARKNPANPTIELGPE-FKKVGNFLSRFKS-IPSIIELDSLKVTGDVWFGANITLKGKVTIAAK-SGEKLEIPDGAVL 458 (469)
Q Consensus 382 ~~~~r~~~~~p~V~l~~~-~~~~~~~~~~i~~-~p~~~~~~~l~v~G~v~fg~~V~i~g~~~I~~~-~~~~~~I~~~s~l 458 (469)
.+|.|+. ..|.|+|+|. |.++++|++||++ +|||+++++|+|+|+|+||+||+++|+|+|.++ +|++++||+|++|
T Consensus 403 ~~~~~~~-~~p~i~l~p~~~~~~~~~~~r~~~g~psi~~~~~L~v~G~~~f~~~v~l~G~v~i~a~~~~~~~~ip~g~~l 481 (505)
T 2oeg_A 403 LDDRCHG-HPPVVDLDSAHYKMMNGFEKLVQHGVPSLVECKRVTVKGLVQFGAGNVLTGTVTIENTDSASAFVIPDGAKL 481 (505)
T ss_dssp ECGGGTT-CCCEEEECHHHHSSHHHHHHHSTTCCCBCTTEEEEEEESSEECCTTCEEEEEEEEECCSCSSCEECCTTCEE
T ss_pred EcccccC-cCCeEEEChhHcCcHHHHHHhcCCCCCccccCcEEEEEcceEEccCcEEEEEEEEEecCCCCcEEeCCCCEE
Confidence 6888763 6789999999 6699999999988 999999999999999999999999999999998 9999999999999
Q ss_pred ecceecC
Q 012172 459 ENKEING 465 (469)
Q Consensus 459 e~~~v~~ 465 (469)
||+.|..
T Consensus 482 ~n~~~~~ 488 (505)
T 2oeg_A 482 NDTTASP 488 (505)
T ss_dssp ESCEECC
T ss_pred eCceech
Confidence 9998864
|
| >3ogz_A UDP-sugar pyrophosphorylase; LEFT handed beta helix, rossmann fold, UDP sugar pyrophospho transferase; 2.03A {Leishmania major} PDB: 3oh3_A* 3oh1_A* 3oh0_A* 3oh2_A* 3oh4_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=3.9e-80 Score=659.02 Aligned_cols=444 Identities=19% Similarity=0.218 Sum_probs=379.2
Q ss_pred HHHHHHHHHHhhhhcccChhHHHHHHHHHHHHhhcCCCCccCCccccCCCCc---cccCCCCCCCCCChhhHHHhcccee
Q 012172 5 AEKLTQLKSAVAGLNQISENEKNGFINLVARYLSGEAQHVEWSKIQTPTDKI---VVPCDSLAPVPEDPAETKKLLDKLV 81 (469)
Q Consensus 5 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~---~~~~~~~~~~~~~~~~g~~~l~k~a 81 (469)
.++.++|+++|..++..+++++..|++.+++++....+..+++.++|+|... .++.++ ++...+++.|+++|+|+|
T Consensus 38 ~~e~~~L~~qL~~~d~~~~~gl~~~~~~a~~~l~~~~~~~~~~~~~p~P~~~~~~~l~~~~-~~~~~~~~~Gl~~i~kva 116 (630)
T 3ogz_A 38 NERQIALLTDLYMFSNMYPGGVAQYIRNGHELLARESEEVDFAALEMPPLIFEAPSLHRRT-AERTALENAGTAMLCKTV 116 (630)
T ss_dssp CHHHHHHHHHHHHGGGTSTTHHHHHHHHHHHHHHHHTSCCCCSEEECCSCEEECCCTTCCC-HHHHHHHHHHHHHGGGEE
T ss_pred HHHHHHHHHHHHhhChhhhhhHHHHHHHHHHHhhccccCCcccccccCCCCCccccccCCH-HHHHHHHHHhHHHHhhce
Confidence 4567799999999998999999999999999995545677889999766421 122111 112235567999999999
Q ss_pred EEEEcCCCCCcCCCCCCcccccc--CCCCchHHHHHHHHHHhhhhcCCcccEEEecCCCChHHHHHHHHHhcC-CCCceE
Q 012172 82 VLKLNGGLGTTMGCTGPKSVIEV--RNGLTFLDLIVIQIENLNAKYGCNVPLLLMNSFNTHDDTSKIIEKYSK-SNVEIH 158 (469)
Q Consensus 82 vviLAGG~GTRmg~~~PK~l~~v--~~gks~L~~~~~~i~~l~~~~~~~iplviMtS~~t~e~t~~~~~~~~g-~~~~i~ 158 (469)
||+||||||||||++.||+++|+ ++|+||||+++++++ +.+|+.|||+||||+.||++|++||++ +| .+.+|+
T Consensus 117 vvllaGGlGTRLG~~~pK~~lpv~~~s~ks~lql~~e~i~---~~~g~~iPl~IMTS~~T~~~T~~~~~~-fgl~~~~V~ 192 (630)
T 3ogz_A 117 FVLVAGGLGERLGYSSIKVSLPVETATNTTYLAYYLRWAQ---RVGGKEVPFVIMTSDDTHDRTLQLLRE-LQLEVPNLH 192 (630)
T ss_dssp EEEECCCEEGGGTEEEEGGGSBSCTTTCCBHHHHHHHHHH---HHHCTTCCEEEEECTTTHHHHHHHHHH-TTCCCTTEE
T ss_pred EEEecCCcccccCCCCCcccceecCCCCCcHHHHHHHHHH---HHhCCCCcEEEEecccchHHHHHHHHH-hCCCcccEE
Confidence 99999999999999999999998 479999999999999 457899999999999999999999999 55 567899
Q ss_pred EEEecCcceec-CCCCcccCCCCCCCCcccccCCCcccchhccccc------------------hHHHHHHcCCcEEEEE
Q 012172 159 TFNQSQYPRLC-ADDFVPLPCKGKTDKDGWYPPGHGDVFPSLMNSG------------------KLDALISQGKEYVFAA 219 (469)
Q Consensus 159 ~f~Q~~~P~l~-~~~~~~~~~~~~~~~~~~~P~GhGd~~~~L~~sg------------------~L~~l~~~G~~~v~v~ 219 (469)
+|+|+++||++ .+|++++..+ ++++|+|+||||+|.+|+++| +|++|+++|++|+||+
T Consensus 193 ~F~Q~~~P~i~~~~g~l~l~~~---~~i~~~P~GhGdv~~aL~~sG~~~~~~~~~~~~~~~~~~lLd~l~~~Gieyi~v~ 269 (630)
T 3ogz_A 193 VLKQGQVFCFADSAAHLALDET---GKLLRKPHGHGDVHSLIYNATVKRDVVPDSGDGTATAQPLVNDWLAAGYESIVFI 269 (630)
T ss_dssp EEECCCEECBSSTTCCBCBCTT---SSBCEECCCTTHHHHHHHHCBC--------------CCBHHHHHHHTTCCEEEEE
T ss_pred EEEcCCEEEEecCCCceeecCC---CcccCCCCCCHHHHHHHHHcCCCcccccccccccccHHHHHHHHHHcCCEEEEEE
Confidence 99999999996 6788888865 699999999999999999999 9999999999999999
Q ss_pred eCcc-ccccccHHHHHHHHHcCCcceEEEeeeccCCCcceEEEEe---CCee---EEEEeccCChhhhhh-------ccc
Q 012172 220 NSDN-LGAIVDLKILNHLIQNKNEYCMEVTPKTLADVKGGTLISY---EGKV---QLLEIAQVPDEHVNE-------FKS 285 (469)
Q Consensus 220 n~DN-L~~~~dp~~Lg~~~~~~~~~~~~v~~k~~~~~~~G~iv~~---~g~~---~ivEy~~~~~e~~~~-------~~~ 285 (469)
|+|| |++++||.||||+++++++++++|++|+ +.+++|++|+. +|++ ++|||+|++++.++. +.+
T Consensus 270 ~vDN~L~~~~DP~~lG~~~~~~~d~~~kvv~r~-p~E~vG~l~~~~~~dGk~~~v~vVEYsei~~~~~~~~~~~g~~~~~ 348 (630)
T 3ogz_A 270 QDTNAGATITIPISLALSAEHSLDMNFTCIPRV-PKEPIGLLCRTKKNSGDPWLVANVEYNVFAEVSRALNKDGGDEVSD 348 (630)
T ss_dssp CTTBTTHHHHHHHHHHHHHHTTCSEEEEEECCC-SSCSSCEEEEEESSTTSCCEEEEECHHHHHHHHHHC----------
T ss_pred ccCCccccccCHHHhHHHHhcCCCEEEEEEECC-CCcceeeEEEEecCCCceeeeeEEEeccCCHhHhhccCCCcccccc
Confidence 9999 9999999999999999999999999985 67778888884 8998 569999999886652 444
Q ss_pred cccccEE--EEEeEEEeHHHHHHHHHhcccccccccCCCcCCC-----cceehhHHHhhhHhhhcc-c---ceeEeecCc
Q 012172 286 IEKFKIF--NTNNLWVNLKAIKRLVEADALKMEIIPNPKEVDG-----IKVLQLETAAGAAIRFFD-H---AIGCNVHRS 354 (469)
Q Consensus 286 ~~~~~~~--Nt~~~~~~l~~L~~~l~~~~~~lp~~~n~K~~~g-----~~~iqle~~~~d~~~~~~-~---~~~v~v~r~ 354 (469)
..+|++| ||||+||+++++.+.+.+....+|+|+|+|++++ ++++|||++|||++..|+ + +.+++|+|+
T Consensus 349 ~~~~~~f~GNtNnl~~~L~a~~~~l~~~~~~ip~~vNpK~~d~~~~~~~~~~qLEt~m~d~~~~F~~~~~~v~~~~V~R~ 428 (630)
T 3ogz_A 349 PTGFSPFPGSVNTLVFKLSSYVDRLRESHGIVPEFINPKYSDETRRSFKKPARIESLMQDIALLFSEDDYRVGGTVFERF 428 (630)
T ss_dssp --CCCSSCEEEEEEEEEHHHHHHHHHHHTTCCCCEECCCBSSSSSCCBSSCBCEECCGGGGGGGCCTTTCCEEEEECCGG
T ss_pred ccccccccccceeeeEEHHHHHHHHHhccCccceecCCcccCCcccccCcchhhhhHHHHHHHhccccCcceeEEEECCC
Confidence 5668888 9999999999999999887789999999999973 248999999999999997 4 477899999
Q ss_pred cccccCCchh--------------HHHHHHHHHHhhcCceeecCCccC----------------CCCCeEEECCCcc-c-
Q 012172 355 RFLPVKATSD--------------LLLVQSDLYTLADGFVTRNEARKN----------------PANPTIELGPEFK-K- 402 (469)
Q Consensus 355 eF~pVKn~~d--------------L~~~~~~~~~l~~g~l~~~~~r~~----------------~~~p~V~l~~~~~-~- 402 (469)
||+||||+.+ ..++|+++|.+++.|+..++.++. ...|.|.|+|.|+ +
T Consensus 429 ~F~PVKn~~~~a~~k~~~g~~~~sp~t~~~dly~~~~~~L~~aG~~v~~~~~~~~~~~~~~~~~~~~P~i~l~p~~~~~~ 508 (630)
T 3ogz_A 429 SYQPVKNSLEEAAGLVAQGNGAYCAATGEAAFYELQRRRLKAIGLPLFYSSQPEVTVAKDAFGVRLFPIIVLDTVCASSG 508 (630)
T ss_dssp GCCBCCBCHHHHHHHHHTTCCCCBHHHHHHHHHHHHHHHHHHTTCCCCCCCSCSEEETTTTEEECCCSEEEECHHHHTTC
T ss_pred eeecccCChhHhhhhhccCCCcCChHHHHHHHHHHHHHHHHHcCceecccccchhhhhcCccccCCCCEEEEeccccccc
Confidence 9999999984 578899999888777766555432 3468999999997 5
Q ss_pred -cccccccccc--CCcccccCceEEEeeEEECCCcEEeeeEEEEecCCCc----eeeCCCCeeec
Q 012172 403 -VGNFLSRFKS--IPSIIELDSLKVTGDVWFGANITLKGKVTIAAKSGEK----LEIPDGAVLEN 460 (469)
Q Consensus 403 -~~~~~~~i~~--~p~~~~~~~l~v~G~v~fg~~V~i~g~~~I~~~~~~~----~~I~~~s~le~ 460 (469)
++++.+||++ .++|...+.|+|+|+|+| +||.|+|.++|++..|+. ++|.. ++.|
T Consensus 509 ~~~~~~~k~~~~~~~~i~~~S~L~veg~v~~-~~l~LdG~lvI~a~~~~~~~~~v~~~~--~v~n 570 (630)
T 3ogz_A 509 SLDDLARVFPTPEKVHIDQHSTLIVEGRVII-ESLELYGALTIRGPTDSMALPHVVRNA--VVRN 570 (630)
T ss_dssp CHHHHHHHCSSGGGEEECTTCEEEEESSEEE-SCEEEESEEEEECCSSTTSCCEEECSE--EEEC
T ss_pred cHHHHHHHhCCCCCceecCCcEEEEEEEEEE-EEEEEeeEEEEEcCCCCccCceEEecc--eEec
Confidence 7999999988 889999999999999666 999999999999999888 76665 4444
|
| >3oc9_A UDP-N-acetylglucosamine pyrophosphorylase; structural genomics, seattle structural genomics center for infectious disease, ssgcid; 1.80A {Entamoeba histolytica} | Back alignment and structure |
|---|
Probab=100.00 E-value=1.4e-72 Score=579.95 Aligned_cols=326 Identities=19% Similarity=0.272 Sum_probs=294.8
Q ss_pred CChhhHHHhc--cceeEEEEcCCCCCcCCCCCCcccccc--CCCCchHHHHHHHHHHhhh---hc----CCcccEEEecC
Q 012172 68 EDPAETKKLL--DKLVVLKLNGGLGTTMGCTGPKSVIEV--RNGLTFLDLIVIQIENLNA---KY----GCNVPLLLMNS 136 (469)
Q Consensus 68 ~~~~~g~~~l--~k~avviLAGG~GTRmg~~~PK~l~~v--~~gks~L~~~~~~i~~l~~---~~----~~~iplviMtS 136 (469)
++++.|+++| +|+|||+||||+|||||++.||+|++| ++||||||++++++++++. ++ ++.|||+||||
T Consensus 22 ~~~~~Gl~~i~~gkvavvlLAGG~GTRLG~~~PK~~~~Vgl~~gks~lq~~~e~i~~lq~l~~~~~~~~~~~Ip~~IMtS 101 (405)
T 3oc9_A 22 EHYYRGLELISQGKTALITPAGGQGSRLGFEHPKGMFVLPFEIPKSIFQMTSERLLRLQELASEYSHQKNVMIHWFLMTN 101 (405)
T ss_dssp HHHHHHHHHHHTTCEEEEEECCSBCTTTTCCSBGGGCEECSSSCEEHHHHHHHHHHHHHHHHHHHHCCSCCCCEEEEEEC
T ss_pred HHHHHHHHHHhcCceEEEEecCCCcccccCCCCCccccccCCCCCcHHHHHHHHHHHHHHHHhhhccccCCCCCEEEEeC
Confidence 4567899999 599999999999999999999999998 8999999999999987654 33 68899999999
Q ss_pred CCChHHHHHHHHHhc--C-CCCceEEEEecCcceecCCCCcccCCCCCCCCcccccCCCcccchhccccchHHHHHHcCC
Q 012172 137 FNTHDDTSKIIEKYS--K-SNVEIHTFNQSQYPRLCADDFVPLPCKGKTDKDGWYPPGHGDVFPSLMNSGKLDALISQGK 213 (469)
Q Consensus 137 ~~t~e~t~~~~~~~~--g-~~~~i~~f~Q~~~P~l~~~~~~~~~~~~~~~~~~~~P~GhGd~~~~L~~sg~L~~l~~~G~ 213 (469)
++|++.|++||++|. | .+.+|.+|.|+++||++.+|+++++++ ++++|+|+||||+|.+|..+|+|++|.++|+
T Consensus 102 ~~t~e~t~~~f~~~~~fGl~~~~i~~f~Q~~~P~i~~dg~i~l~~~---~~i~~~P~GhGgi~~aL~~sG~Ld~l~~~Gi 178 (405)
T 3oc9_A 102 EETIEEINNYFKEHQYFGLSSEQIHCFPQGMLPVVDFNGKILYEKK---DKPYMAPNGHGGLFKALKDNGILEFMNEKGI 178 (405)
T ss_dssp TTTHHHHHHHHHHTGGGGSCTTSEEEEECCEEECBCTTSCBCEEET---TEECEEECCGGGHHHHHHHTTHHHHHHHHTC
T ss_pred CccHHHHHHHHHhCcccCCCccceEEEeeCceeEEecCCCeecCCC---CccccccCCChHHHHHHHHCCcHHHHHhcCC
Confidence 999999999999854 6 456899999999999999999999865 8999999999999999999999999999999
Q ss_pred cEEEEEeCcc-ccccccHHHHHHHHHcCCcceEEEeeeccCCCcceEEEEeCCeeEEEEeccCChhhhhhccc---cccc
Q 012172 214 EYVFAANSDN-LGAIVDLKILNHLIQNKNEYCMEVTPKTLADVKGGTLISYEGKVQLLEIAQVPDEHVNEFKS---IEKF 289 (469)
Q Consensus 214 ~~v~v~n~DN-L~~~~dp~~Lg~~~~~~~~~~~~v~~k~~~~~~~G~iv~~~g~~~ivEy~~~~~e~~~~~~~---~~~~ 289 (469)
+|++|+|+|| |++++||.||||+++++++++++|++|+.+++++|++|++||+++||||+|+|++ .++++ ...|
T Consensus 179 eyi~v~nvDN~L~~~~Dp~~lg~~~~~~~d~~~kvv~k~~~dek~Gvl~~~dg~~~vvEysei~~e--~e~~~~~g~l~f 256 (405)
T 3oc9_A 179 KYSVAHNVDNILCKDVDPNMIGYMDLLQSEICIKIVKKGFKEEKVGVLVKEQERIKVVEYTELTDE--LNKQLSNGEFIY 256 (405)
T ss_dssp CEEEEECTTBTTCCSSCHHHHHHHHHTTCSEEEEEEECCSTTCSCCEEEEETTEEEEECGGGCCTT--TTCBCTTSCBSS
T ss_pred EEEEEEeCCCcccccCCHHHHHHHHHcCCCEEEEEEECCCCCCccceEEEECCeeEEEEEeeCCHH--HhhcCCCCceee
Confidence 9999999999 9999999999999999999999999999999999999999999999999999998 44443 3455
Q ss_pred cEEEEEeEEEeHHHHHHHHHhcccccccccCCCcCC-----C-------cceehhHHHhhhHhhhcccceeEeecCc-cc
Q 012172 290 KIFNTNNLWVNLKAIKRLVEADALKMEIIPNPKEVD-----G-------IKVLQLETAAGAAIRFFDHAIGCNVHRS-RF 356 (469)
Q Consensus 290 ~~~Nt~~~~~~l~~L~~~l~~~~~~lp~~~n~K~~~-----g-------~~~iqle~~~~d~~~~~~~~~~v~v~r~-eF 356 (469)
...|+++|+|++++|++++ ...||+|+|.|+++ | ++++|||+|+||+|++++++.+++|+|+ ||
T Consensus 257 n~~Ni~~h~fs~~fL~~i~---~~~l~~h~a~Kkip~~d~~g~~~~p~~~ngiklE~fifd~f~~~~~~~~~eV~R~~eF 333 (405)
T 3oc9_A 257 NCGHISINGYSTSFLEKAA---EYQLPYHIAKKKVPFVNEQGIVIHPSENNGIKKEIFFFDVFPLATKVSIFEIQRFIEF 333 (405)
T ss_dssp CEEEEEEEEEEHHHHHHHT---TCCCCCEEEEECCCEECTTSCEECCSSCCEEEEECCGGGGGGGCSCEEEEECCHHHHC
T ss_pred ccceeEeeecCHHHHHHhh---hccCCcEEeccccCccCCCCCCcccCCcceeehHHHHHHHHHhccceEEEEEChHhcc
Confidence 6667777778999999998 45799999999985 2 4699999999999999999999999998 99
Q ss_pred cccCCc-----hhHHHHHHHHHHhhcCceeecCCccCCCC-CeEEECCCcc
Q 012172 357 LPVKAT-----SDLLLVQSDLYTLADGFVTRNEARKNPAN-PTIELGPEFK 401 (469)
Q Consensus 357 ~pVKn~-----~dL~~~~~~~~~l~~g~l~~~~~r~~~~~-p~V~l~~~~~ 401 (469)
+||||+ +++.+||++++.+++.|++.++..+.+.. ..|+++|.++
T Consensus 334 ~PlKn~~g~~~dsp~tar~~l~~~~~~wl~~ag~~~~~~~~~~~Eispl~s 384 (405)
T 3oc9_A 334 SALKNSLNESFDNVNTVKRDWYRLNIYYLKKAGAIVDDSKSPICEISFRKS 384 (405)
T ss_dssp CBCCCCTTSSSSSHHHHHHHHHHHHHHHHHHTTCEEECSSCCCEEECTTTC
T ss_pred cceecCCCCCCCCHHHHHHHHHHHHHHHHHHCCCEEcCCCCccEEeCcccc
Confidence 999998 56999999999999999999998875443 3699999865
|
| >2yqc_A UDP-N-acetylglucosamine pyrophosphorylase; uridine-diphospho-N- acetylglucosamine, N-acetylglucosamine-1-phosphate, transferase; 1.90A {Candida albicans} PDB: 2yqh_A* 2yqj_A* 2yqs_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=1.8e-69 Score=573.08 Aligned_cols=387 Identities=17% Similarity=0.201 Sum_probs=326.5
Q ss_pred HHHHHHHHHHhhhhcccChhHHHHHHHHHHHHhhcCCCCccCC-ccccCCCCccccCCCCCC--CCCChhhHHHhc--cc
Q 012172 5 AEKLTQLKSAVAGLNQISENEKNGFINLVARYLSGEAQHVEWS-KIQTPTDKIVVPCDSLAP--VPEDPAETKKLL--DK 79 (469)
Q Consensus 5 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~p~~~~~~~~~~~~~~--~~~~~~~g~~~l--~k 79 (469)
.++.++|+++|..+. +...+.++|++....++ ..+++ .++|++++.+.++.++.. ...+++.|+++| +|
T Consensus 30 ~~ek~~l~~ql~~~~-----d~~~l~~~~~~~~~~~~-~~~~~~~i~p~p~~~~~~~~~~~~~~~~~~~~~G~~~i~~gk 103 (486)
T 2yqc_A 30 IDQQQEFIDQLSTIE-----EPAKLISTVEQAIQFSQ-TNSTSRNFTQLPNEQTASTLDLSKDILQNWTELGLKAIGNGE 103 (486)
T ss_dssp HHHHHHHHHHHHTSS-----SHHHHHHHHHHHHHHTC-----CCCEECCCGGGEEETTTSCHHHHHHHHHHHHHHHHTTC
T ss_pred HHHHHHHHHHHHhCc-----CHHHHHHHHHHHHhccc-cccccccccCCChhhccccccCChHHHHHHHHHHHHHHhhCC
Confidence 455567777775430 22345555555554432 12233 499988877766665531 112446799999 48
Q ss_pred eeEEEEcCCCCCcCCCCCCccccccC--CCCchHHHHHHHHHHhhhhc----C----CcccEEEecCCCChHHHHHHHHH
Q 012172 80 LVVLKLNGGLGTTMGCTGPKSVIEVR--NGLTFLDLIVIQIENLNAKY----G----CNVPLLLMNSFNTHDDTSKIIEK 149 (469)
Q Consensus 80 ~avviLAGG~GTRmg~~~PK~l~~v~--~gks~L~~~~~~i~~l~~~~----~----~~iplviMtS~~t~e~t~~~~~~ 149 (469)
++||+||||+|||||++.||+|++|. +|+||||++++++++++..+ | +.||||||||++|++.|++||++
T Consensus 104 vavvlLaGG~GTRLg~~~PK~l~~v~l~~gk~~l~~~~e~l~~~~~~~~~~~G~~~~~~ip~~ImtS~~t~~~t~~~~~~ 183 (486)
T 2yqc_A 104 VAVLLMAGGQGTRLGSSAPKGCFNIELPSQKSLFQIQAEKILKIEQLAQQYLKSTKKPIINWYIMTSGPTRNATESFFIE 183 (486)
T ss_dssp EEEEEEEESBCGGGTCSSBGGGCBCCCTTCCBHHHHHHHHHHHHHHHHHHHHTCSSCCCCEEEEEECGGGHHHHHHHHHH
T ss_pred eEEEEEcCCccccCCCCCCCccceecCCCCCcHHHHHHHHHHHHHHHhhhhcCCCcCCccCEEEEECCCCHHHHHHHHhh
Confidence 99999999999999999999999983 69999999999999998665 6 78999999999999999999998
Q ss_pred h--cC-CCCceEEEEecCcceecCCC-CcccCCCCCCCCcccccCCCcccchhccccchHHHHHHcCCcEEEEEeCcc-c
Q 012172 150 Y--SK-SNVEIHTFNQSQYPRLCADD-FVPLPCKGKTDKDGWYPPGHGDVFPSLMNSGKLDALISQGKEYVFAANSDN-L 224 (469)
Q Consensus 150 ~--~g-~~~~i~~f~Q~~~P~l~~~~-~~~~~~~~~~~~~~~~P~GhGd~~~~L~~sg~L~~l~~~G~~~v~v~n~DN-L 224 (469)
| +| ...+|++|+|+++||++.+| +++++++ ++++|+|+||||+|.+|.++|+|++|.++|++|++|+|+|| |
T Consensus 184 ~~~fgl~~~~v~~f~Q~~~P~i~~dg~~i~l~~~---~~i~~~P~G~Ggi~~aL~~sG~Ld~l~~~G~~yi~v~~vDN~l 260 (486)
T 2yqc_A 184 NNYFGLNSHQVIFFNQGTLPCFNLQGNKILLELK---NSICQSPDGNGGLYKALKDNGILDDLNSKGIKHIHMYCVDNCL 260 (486)
T ss_dssp TGGGGSCGGGEEEEECCEEECBCTTSSSBCEEET---TEECEEECCGGGHHHHHHHTTHHHHHHHHTCCEEEEEETTBTT
T ss_pred ccccCCCcceEEEEecccceeEcCCCCccccCCC---CccccCcCCchHHHHHHHHcCcHHHHHhcCCeEEEEECCCCce
Confidence 4 46 45689999999999999999 8998875 88999999999999999999999999999999999999999 7
Q ss_pred cccccHHHHHHHHHcCCcceEEEeeeccCCCcceEEEEe--CCeeEEEEeccCChhhhhhcc----ccccccEEEEEeEE
Q 012172 225 GAIVDLKILNHLIQNKNEYCMEVTPKTLADVKGGTLISY--EGKVQLLEIAQVPDEHVNEFK----SIEKFKIFNTNNLW 298 (469)
Q Consensus 225 ~~~~dp~~Lg~~~~~~~~~~~~v~~k~~~~~~~G~iv~~--~g~~~ivEy~~~~~e~~~~~~----~~~~~~~~Nt~~~~ 298 (469)
+..+||.+|||+++++++++++|++|+.+++++|++|++ +|+++|+||+|+|++.++.+. +...+..+|||+||
T Consensus 261 ~~~~Dp~~lg~~~~~~~~~~~~vv~k~~~~e~~Gvl~~~~~dg~~~vvEy~E~~~~~~~~~~~~~~~~~~~~~~Ni~~~~ 340 (486)
T 2yqc_A 261 VKVADPIFIGFAIAKKFDLATKVVRKRDANESVGLIVLDQDNQKPCVIEYSEISQELANKKDPQDSSKLFLRAANIVNHY 340 (486)
T ss_dssp CCTTCHHHHHHHHHHTCSEEEEEEECCSTTCCCCEEEEETTTTEEEEECGGGSCHHHHHCEETTEEEEESSCEEEEEEEE
T ss_pred eeccCHHHHHHHHHcCCCEEEEEEEcCCCCCceeEEEEEecCCCEEEEEEecCCHHHhhcccccccccccccceeEEEEE
Confidence 779999999999999999999999999999999999998 999999999999998877652 33578899999999
Q ss_pred EeHHHHHHHHHhcccc---cccccCCCcCC-------------CcceehhHHHhhhHhhhcc--cceeEeecC-cccccc
Q 012172 299 VNLKAIKRLVEADALK---MEIIPNPKEVD-------------GIKVLQLETAAGAAIRFFD--HAIGCNVHR-SRFLPV 359 (469)
Q Consensus 299 ~~l~~L~~~l~~~~~~---lp~~~n~K~~~-------------g~~~iqle~~~~d~~~~~~--~~~~v~v~r-~eF~pV 359 (469)
|++++|++++.+.... ||+|+|+|+++ .++++|||++|||+|++++ ++.+++|+| +||+||
T Consensus 341 ~~l~~L~~~l~~~~~~~~~lp~~v~~Kki~~~d~~~g~~~~p~~pn~~klE~~~~d~~~~~~l~~~~~~~V~R~~~FsPv 420 (486)
T 2yqc_A 341 YSVEFLNKMIPKWISSQKYLPFHIAKKKIPSLNLENGEFYKPTEPNGIKLEQFIFDVFPSVELNKFGCLEVDRLDEFSPL 420 (486)
T ss_dssp EEHHHHHHHHHHHTTCTTTSCCEEEEECCCEECTTTCCEECCSSCCEEEEECCGGGGGGGSCGGGEEEEEECHHHHCCBC
T ss_pred EeHHHHHHHHHhhcCcccCCcceEeccccCccccccCeeccCCCCCeeeeeehHhhHHhhcccCceEEEEECcccceeee
Confidence 9999999978776666 99999999763 2358999999999999999 999999999 599999
Q ss_pred CCch-----hHHHHHHHHHHhhcCceeecCCccCCCCCeEEECCCcc
Q 012172 360 KATS-----DLLLVQSDLYTLADGFVTRNEARKNPANPTIELGPEFK 401 (469)
Q Consensus 360 Kn~~-----dL~~~~~~~~~l~~g~l~~~~~r~~~~~p~V~l~~~~~ 401 (469)
||+. ...+|+++++.+++.|+..+|..+.+ ...|+++|.+.
T Consensus 421 Kn~~~~~~dsp~ta~~~l~~~~~~~l~~aG~~~~~-~~~~eisp~~s 466 (486)
T 2yqc_A 421 KNADGAKNDTPTTCRNHYLERSSKWVIQNGGVIDN-QGLVEVDSKTS 466 (486)
T ss_dssp CSCTTSSSSSHHHHHHHHHHHHHHHHHHTTCEECT-TCCCBCCTTTC
T ss_pred cCCCCCCCCCHHHHHHHHHHHHHHHHHHCCCeecC-CCcEEEcceee
Confidence 9974 38999999999999999999987643 23578888754
|
| >1jv1_A Glcnac1P uridyltransferase isoform 1: AGX1; nucleotidyltransferase, alternative splicing; HET: UD1; 1.90A {Homo sapiens} SCOP: c.68.1.5 PDB: 1jv3_A* 1jvg_A* 1jvd_A* 1vm8_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=7e-68 Score=562.77 Aligned_cols=374 Identities=18% Similarity=0.253 Sum_probs=321.5
Q ss_pred HHHHHHHHHHhhhhcccChhHHHHHHHHHHHHhhcCC----CCccCCccccCCCCccccCCCCC-CCCCChhhHHHhc--
Q 012172 5 AEKLTQLKSAVAGLNQISENEKNGFINLVARYLSGEA----QHVEWSKIQTPTDKIVVPCDSLA-PVPEDPAETKKLL-- 77 (469)
Q Consensus 5 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~p~~~~~~~~~~~~~-~~~~~~~~g~~~l-- 77 (469)
.++.++|+++|..+ +...|.++|+++++... +...++.|+|++++.+.+|.+-+ ....+++.|++++
T Consensus 27 ~~ek~~l~~ql~~~------d~~~~~~~~~~~~~~~~~s~~~~~~~~~i~p~p~~~~~~~~~~~~~~~~~~~~Gl~~i~~ 100 (505)
T 1jv1_A 27 EAQQVELYAELQAM------NFEELNFFFQKAIEGFNQSSHQKNVDARMEPVPREVLGSATRDQDQLQAWESEGLFQISQ 100 (505)
T ss_dssp HHHHHHHHHHHHTC------CHHHHHHHHHHHHHCC-----------CCBCCCGGGEEETTTTGGGHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHh------CHHHHHHHHHHHHHhhhhccccCcccccccCCChHhcccccCChHHHHHHHHHhHHhhcc
Confidence 45566778777543 34468888888886421 11224779999888777775511 1112445799987
Q ss_pred cceeEEEEcCCCCCcCCCCCCcccccc--CCCCchHHHHHHHHHHhh----hhcC--CcccEEEecCCCChHHHHHHHHH
Q 012172 78 DKLVVLKLNGGLGTTMGCTGPKSVIEV--RNGLTFLDLIVIQIENLN----AKYG--CNVPLLLMNSFNTHDDTSKIIEK 149 (469)
Q Consensus 78 ~k~avviLAGG~GTRmg~~~PK~l~~v--~~gks~L~~~~~~i~~l~----~~~~--~~iplviMtS~~t~e~t~~~~~~ 149 (469)
+|+++|+||||+|||||++.||+|+|| ++|+||||++++++++++ +++| +.+||+||||++|++.|++||++
T Consensus 101 ~kvavViLAGG~GTRLg~~~PK~l~pv~~~~gk~~le~~~e~l~~lq~la~~~~G~~~~ip~vImtS~~t~e~t~~~f~~ 180 (505)
T 1jv1_A 101 NKVAVLLLAGGQGTRLGVAYPKGMYDVGLPSRKTLFQIQAERILKLQQVAEKYYGNKCIIPWYIMTSGRTMESTKEFFTK 180 (505)
T ss_dssp TCEEEEEECCCCCCTTSCSSCGGGCCCCCTTCCCHHHHHHHHHHHHHHHHHHHHSSCCCCCEEEEECTTTHHHHHHHHHH
T ss_pred CceEEEEEcCCccccCCCCCCCccceeecCCCCcHHHHHHHHHHHHHHHHHHhcCCCccceEEEEecCCCHHHHHHHHHh
Confidence 699999999999999999999999998 689999999999998854 4568 78999999999999999999998
Q ss_pred h--cC-CCCceEEEEecCcceecCCCCcccCCCCCCCCcccccCCCcccchhccccchHHHHHHcCCcEEEEEeCcc-cc
Q 012172 150 Y--SK-SNVEIHTFNQSQYPRLCADDFVPLPCKGKTDKDGWYPPGHGDVFPSLMNSGKLDALISQGKEYVFAANSDN-LG 225 (469)
Q Consensus 150 ~--~g-~~~~i~~f~Q~~~P~l~~~~~~~~~~~~~~~~~~~~P~GhGd~~~~L~~sg~L~~l~~~G~~~v~v~n~DN-L~ 225 (469)
| +| .+.+|++|.|+++||++.+|+++++++ ++++|+|+||||+|.+|..+|+|++|+++|++|+||+|+|| |+
T Consensus 181 ~~~fGl~~~~I~~f~Q~~~P~i~~~g~~~l~~~---~~~e~~P~GtGG~~~~L~~sg~L~~l~~~g~e~~~V~n~Dn~L~ 257 (505)
T 1jv1_A 181 HKYFGLKKENVIFFQQGMLPAMSFDGKIILEEK---NKVSMAPDGNGGLYRALAAQNIVEDMEQRGIWSIHVYCVDNILV 257 (505)
T ss_dssp TGGGGSCGGGEEEEECCEEECEETTSCBCEEET---TEECEEECCGGGHHHHHHHTTHHHHHHHTTCCEEEEEETTBTTC
T ss_pred hhhcCCCcCceEEEEecceEEEcCCCcccccCC---cccccCCCCchHHHHHHHHcCcHHHHHhcCCCEEEEEECCcccc
Confidence 5 45 345799999999999999999999765 88999999999999999999999999999999999999999 79
Q ss_pred ccccHHHHHHHHHcCCcceEEEeeeccCCCcceEEEEeCCeeEEEEeccCChhhhhhcc--ccccccEEEEEeEEEeHHH
Q 012172 226 AIVDLKILNHLIQNKNEYCMEVTPKTLADVKGGTLISYEGKVQLLEIAQVPDEHVNEFK--SIEKFKIFNTNNLWVNLKA 303 (469)
Q Consensus 226 ~~~dp~~Lg~~~~~~~~~~~~v~~k~~~~~~~G~iv~~~g~~~ivEy~~~~~e~~~~~~--~~~~~~~~Nt~~~~~~l~~ 303 (469)
+.+||.++||+..++++++++|++|+.+++++|+++.++|+++++||+|+|++.++.++ +...|+++|||+|||++++
T Consensus 258 ~~~d~~~lg~~~~~~~~~~~~v~~k~~~~e~~Gvl~~~dg~~~vvEy~E~p~~~~~~~~~~g~~~~~~~N~~~~~f~l~~ 337 (505)
T 1jv1_A 258 KVADPRFIGFCIQKGADCGAKVVEKTNPTEPVGVVCRVDGVYQVVEYSEISLATAQKRSSDGRLLFNAGNIANHFFTVPF 337 (505)
T ss_dssp CTTCHHHHHHHHHTTCSEEEEEEECCSTTCSCCEEEEETTEEEEECGGGSCHHHHHCBCTTSSBSSCEEEEEEEEEEHHH
T ss_pred ccchHHHHHHHHHcCCCEEEEEEEccCCccCcceEEEECCeEEEEEEeeCCHHHhhhcccccccccceeeEEEEEecHHH
Confidence 99999999999999999999999999999999999999999999999999998877664 4567899999999999999
Q ss_pred HHHHHHhcccccccccCCCcCC-----C-------cceehhHHHhhhHhhhcccceeEeecCc-cccccCCch------h
Q 012172 304 IKRLVEADALKMEIIPNPKEVD-----G-------IKVLQLETAAGAAIRFFDHAIGCNVHRS-RFLPVKATS------D 364 (469)
Q Consensus 304 L~~~l~~~~~~lp~~~n~K~~~-----g-------~~~iqle~~~~d~~~~~~~~~~v~v~r~-eF~pVKn~~------d 364 (469)
|+++.+.....||+|+|.|+++ | ++++|||++|||+|++++++.+++|+|+ ||+||||+. .
T Consensus 338 L~~i~~~~~~~l~~hv~~Kkip~~d~~g~~v~P~~pn~~klE~~i~d~~~~~~~~~~~~V~R~~~FsPvKn~~~~~~~ds 417 (505)
T 1jv1_A 338 LRDVVNVYEPQLQHHVAQKKIPYVDTQGQLIKPDKPNGIKMEKFVFDIFQFAKKFVVYEVLREDEFSPLKNADSQNGKDN 417 (505)
T ss_dssp HHHHHHTTGGGCCCEEEEECCCEECTTSCEECCSSCCEEEEECCGGGGGGGCSSEEEEEECHHHHCCBCCSCTTSSSSSS
T ss_pred HHHHHHhhcccCCceecccccccccCCCCCcCCCCCCceeHHHHHHHHHhhcCceEEEEECcccceeeccCCCCCCCCCC
Confidence 9999987678899999999774 2 4579999999999999999999999998 899999964 3
Q ss_pred HHHHHHHHHHhhcCceeecCCcc
Q 012172 365 LLLVQSDLYTLADGFVTRNEARK 387 (469)
Q Consensus 365 L~~~~~~~~~l~~g~l~~~~~r~ 387 (469)
..+|+++++.+++.|+..++..+
T Consensus 418 p~ta~~~l~~~~~~~l~~ag~~~ 440 (505)
T 1jv1_A 418 PTTARHALMSLHHCWVLNAGGHF 440 (505)
T ss_dssp HHHHHHHHHHHHHHHHHHTTCEE
T ss_pred HHHHHHHHHHHHHHHHHHCCCee
Confidence 88999999999999998888766
|
| >3st8_A Bifunctional protein GLMU; acetyltransferase, pyrophosphorylase, rossmann fold, LEFT-handed-beta-helix, cell shape; HET: COA GP1 UD1; 1.98A {Mycobacterium tuberculosis} PDB: 3spt_A* 3foq_A 3dk5_A 3d8v_A 3d98_A* 3dj4_A 2qkx_A* | Back alignment and structure |
|---|
Probab=99.96 E-value=1.5e-27 Score=254.24 Aligned_cols=337 Identities=14% Similarity=0.151 Sum_probs=221.4
Q ss_pred cceeEEEEcCCCCCcCCCCCCccccccCCCCchHHHHHHHHHHhhhhcCCcccEEEecCCCChHHHHHHHHHhcC-CCCc
Q 012172 78 DKLVVLKLNGGLGTTMGCTGPKSVIEVRNGLTFLDLIVIQIENLNAKYGCNVPLLLMNSFNTHDDTSKIIEKYSK-SNVE 156 (469)
Q Consensus 78 ~k~avviLAGG~GTRmg~~~PK~l~~v~~gks~L~~~~~~i~~l~~~~~~~iplviMtS~~t~e~t~~~~~~~~g-~~~~ 156 (469)
+.++|||||||+||||++..||+|+|| .|||||+|+++.+..++-+ + +++.+++ ..+.++++|.++.. .+.+
T Consensus 11 ~~~~vvILAaG~GtRm~~~~pK~l~pv-~gkp~i~~~l~~~~~~g~~---~--i~vv~~~-~~~~i~~~~~~~~~~~~~~ 83 (501)
T 3st8_A 11 GDTAVLVLAAGPGTRMRSDTPKVLHTL-AGRSMLSHVLHAIAKLAPQ---R--LIVVLGH-DHQRIAPLVGELADTLGRT 83 (501)
T ss_dssp -CEEEEEEECSCCGGGCCSSCGGGCEE-TTEEHHHHHHHHHHHHCCS---E--EEEEECT-THHHHHHHHHHHHHHHTSC
T ss_pred CCceEEEECCcCcccCCCCCCHHHeEE-CChhHHHHHHHHHHhCCCC---E--EEEEeCC-CHHHHHHHHHHHHHhcCCc
Confidence 478999999999999999999999999 9999999999999988643 3 4444466 78899999976321 2346
Q ss_pred eEEEEecCcceecCCCCcccCCCCCCCCcccccCCCcccchhccccchHHHHHHcCCcEEEEEeCcc-ccccccH-HHHH
Q 012172 157 IHTFNQSQYPRLCADDFVPLPCKGKTDKDGWYPPGHGDVFPSLMNSGKLDALISQGKEYVFAANSDN-LGAIVDL-KILN 234 (469)
Q Consensus 157 i~~f~Q~~~P~l~~~~~~~~~~~~~~~~~~~~P~GhGd~~~~L~~sg~L~~l~~~G~~~v~v~n~DN-L~~~~dp-~~Lg 234 (469)
+.++.|.. |.|+||+.....+ .+.+.-..+++++++|. |....+. .++.
T Consensus 84 i~~~~q~~------------------------~lGTa~Av~~a~~-----~l~~~~~~~~lvl~gd~~l~~~~~~~~l~~ 134 (501)
T 3st8_A 84 IDVALQDR------------------------PLGTGHAVLCGLS-----ALPDDYAGNVVVTSGDTPLLDADTLADLIA 134 (501)
T ss_dssp CEEEECSS------------------------CCCHHHHHHHHHT-----TSCTTCCSEEEEEETTCTTCCHHHHHHHHH
T ss_pred EEEEEcCC------------------------CCCcHHHHHHHHH-----HhccccccceeeecCcceeecHHHHHHHHH
Confidence 88888873 6899998543221 22222346899999999 7765433 4566
Q ss_pred HHHHcCCcceEEEeeeccCCCcceEEEE-eCCee-EEEEeccCChhhhhhccccccccEEEEEeEEEeHHHHHHHHHhcc
Q 012172 235 HLIQNKNEYCMEVTPKTLADVKGGTLIS-YEGKV-QLLEIAQVPDEHVNEFKSIEKFKIFNTNNLWVNLKAIKRLVEADA 312 (469)
Q Consensus 235 ~~~~~~~~~~~~v~~k~~~~~~~G~iv~-~~g~~-~ivEy~~~~~e~~~~~~~~~~~~~~Nt~~~~~~l~~L~~~l~~~~ 312 (469)
++...++++.+.++ +..++.+||++++ .+|++ .++|..+.++++ ...+++|+|+|+|+.+.|+.++++
T Consensus 135 ~h~~~~~~~ti~~~-~~~dp~~yG~i~~~~~g~v~~ivEk~~~~~~~-------~~i~~in~Giy~f~~~~l~~~l~~-- 204 (501)
T 3st8_A 135 THRAVSAAVTVLTT-TLDDPFGYGRILRTQDHEVMAIVEQTDATPSQ-------REIREVNAGVYAFDIAALRSALSR-- 204 (501)
T ss_dssp HHHHTTCSEEEEEE-ECSCCTTSCEEEECTTCCEEEEECGGGCCHHH-------HHCCEEEEEEEEEEHHHHHHHHTT--
T ss_pred HHhhccccceEeee-ccCCchhccccccccceeEEeeccccCCChhh-------ccceeeeceeeeecchhHHHhhhh--
Confidence 67777777666544 4467788999987 56777 699999999988 667899999999999999999876
Q ss_pred cccccccCCCcCCCcceehhHHHhhhHhhhcccceeEeecC-ccccccCCchhHHHHHHHHH------HhhcCceeecCC
Q 012172 313 LKMEIIPNPKEVDGIKVLQLETAAGAAIRFFDHAIGCNVHR-SRFLPVKATSDLLLVQSDLY------TLADGFVTRNEA 385 (469)
Q Consensus 313 ~~lp~~~n~K~~~g~~~iqle~~~~d~~~~~~~~~~v~v~r-~eF~pVKn~~dL~~~~~~~~------~l~~g~l~~~~~ 385 (469)
+.+++.. +++-. ...+.-+......+..+..+. ++..++++..+|+.++..++ .+..|....+|.
T Consensus 205 -----l~~~n~~-~e~yl--td~i~~~~~~g~~v~~~~~~~~~~~~g~n~~~~l~~~~~~~~~r~~~~~~~~gv~~~dp~ 276 (501)
T 3st8_A 205 -----LSSNNAQ-QELYL--TDVIAILRSDGQTVHASHVDDSALVAGVNNRVQLAELASELNRRVVAAHQLAGVTVVDPA 276 (501)
T ss_dssp -----CCCCSTT-CSCCT--THHHHHHHHTTCCEEEEECSSGGGGCCCSSHHHHHHHHHHHHHHHHHHHHHTTCEESCGG
T ss_pred -----hcccccc-cccch--hhHHHHHHhcCceEEEEeccchhhhcccccHHHHHHHHHHhhhhhhhhhcccCceeeeec
Confidence 6666644 44422 233332333334455556655 47899999999888776655 455677777766
Q ss_pred ccCCCCCeEEECCCcc-c----ccc-----cccccc-----------c----CC----------cccccCceEEEeeEEE
Q 012172 386 RKNPANPTIELGPEFK-K----VGN-----FLSRFK-----------S----IP----------SIIELDSLKVTGDVWF 430 (469)
Q Consensus 386 r~~~~~p~V~l~~~~~-~----~~~-----~~~~i~-----------~----~p----------~~~~~~~l~v~G~v~f 430 (469)
++. ..+.+.++++.. . +.. -..++. . .. .-.-.....+.+++.+
T Consensus 277 ~~~-i~~dv~IG~dv~I~~~v~i~g~~~Ig~~~~I~~~~~i~~~~i~~~~~i~~~~i~~~~ig~~~~ig~~~~i~~~~~i 355 (501)
T 3st8_A 277 TTW-IDVDVTIGRDTVIHPGTQLLGRTQIGGRCVVGPDTTLTDVAVGDGASVVRTHGSSSSIGDGAAVGPFTYLRPGTAL 355 (501)
T ss_dssp GEE-ECTTCEECTTCEECSSEEEETTCEECTTCEECSSCEEEEEEECTTCEECSEEEEEEEECTTCEECSSEEECTTCEE
T ss_pred ccc-ccCceEECCcceecceeeecCccccccceEEeeceeecCceEecCCEEEeecccccccccccccCCceeecCCcEE
Confidence 542 112222222211 0 000 000000 0 00 0000123445556677
Q ss_pred CCCcEEeeeEEEE-ecCCCceeeCCCCeeecceecCCCCC
Q 012172 431 GANITLKGKVTIA-AKSGEKLEIPDGAVLENKEINGPGDL 469 (469)
Q Consensus 431 g~~V~i~g~~~I~-~~~~~~~~I~~~s~le~~~v~~~~~~ 469 (469)
|++|+|+..|.|+ +..|+.+.|+..+++.+++|+.|++|
T Consensus 356 ~~~v~IG~~v~ik~s~Ig~gskI~~~~~i~d~~Ig~~v~I 395 (501)
T 3st8_A 356 GADGKLGAFVEVKNSTIGTGTKVPHLTYVGDADIGEYSNI 395 (501)
T ss_dssp CTTCEEEETEEEESCEECTTCEEEESCEEESEEECSSCEE
T ss_pred ccccccCCeEEEccceecCCcEEeccceecCceEcCCCEE
Confidence 7777777777777 34555566777777777777666543
|
| >4fce_A Bifunctional protein GLMU; GLMU. csgid, niaid, structural genomics, national institute allergy and infectious diseases; HET: GP1; 1.96A {Yersinia pseudotuberculosis} PDB: 3fww_A 1hv9_A* 2oi5_A* 2oi6_A* 2oi7_A* 1fxj_A* 1fwy_A* | Back alignment and structure |
|---|
Probab=99.87 E-value=1.6e-20 Score=196.50 Aligned_cols=310 Identities=17% Similarity=0.189 Sum_probs=200.1
Q ss_pred cceeEEEEcCCCCCcCCCCCCccccccCCCCchHHHHHHHHHHhhhhcCCcccEEEecCCCChHHHHHHHHHhcCCCCce
Q 012172 78 DKLVVLKLNGGLGTTMGCTGPKSVIEVRNGLTFLDLIVIQIENLNAKYGCNVPLLLMNSFNTHDDTSKIIEKYSKSNVEI 157 (469)
Q Consensus 78 ~k~avviLAGG~GTRmg~~~PK~l~~v~~gks~L~~~~~~i~~l~~~~~~~iplviMtS~~t~e~t~~~~~~~~g~~~~i 157 (469)
+++.+||||||.||||+.+.||.|+++ .|+|||+|.++++.+..- -.+++.|++ .++.++++++++ .+
T Consensus 7 ~~~~aiIlA~G~g~Rl~~~~pK~l~~i-~g~pli~~~l~~l~~~~~-----~~i~vv~~~-~~~~i~~~~~~~-----~~ 74 (459)
T 4fce_A 7 SSMSVVILAAGKGTRMYSDLPKVLHPL-AGKPMVQHVIDAAMKLGA-----QHVHLVYGH-GGELLKKTLADP-----SL 74 (459)
T ss_dssp CCEEEEEEECCCCGGGCCSSCGGGSEE-TTEEHHHHHHHHHHHHTC-----SCEEEEESS-CHHHHHHHC----------
T ss_pred CcceEEEECCCCCccCCCCCCcccCee-CCeeHHHHHHHHHHhCCC-----CcEEEEeCC-CHHHHHHHhccC-----Cc
Confidence 368999999999999999899999999 999999999999988742 245555565 467777776542 23
Q ss_pred EEEEecCcceecCCCCcccCCCCCCCCcccccCCCcccchhccccchHHHHHHcCCcEEEEEeCcc-ccccccHHHHHHH
Q 012172 158 HTFNQSQYPRLCADDFVPLPCKGKTDKDGWYPPGHGDVFPSLMNSGKLDALISQGKEYVFAANSDN-LGAIVDLKILNHL 236 (469)
Q Consensus 158 ~~f~Q~~~P~l~~~~~~~~~~~~~~~~~~~~P~GhGd~~~~L~~sg~L~~l~~~G~~~v~v~n~DN-L~~~~dp~~Lg~~ 236 (469)
.++.|. .+.|+++......+ .+ ...++++++++|. |....+ +..+
T Consensus 75 ~~v~~~------------------------~~~g~~~~i~~~~~-----~~--~~~~~~lv~~~D~P~i~~~~---i~~l 120 (459)
T 4fce_A 75 NWVLQA------------------------EQLGTGHAMQQAAP-----HF--ADDEDILMLYGDVPLISVDT---LQRL 120 (459)
T ss_dssp CEEECS------------------------SCCCHHHHHHHHGG-----GS--CTTSEEEEEETTCTTCCHHH---HHHH
T ss_pred EEEeCC------------------------CCCCcHHHHHHHHH-----hc--CCCCcEEEEeCCcccCCHHH---HHHH
Confidence 333332 13556554332221 11 1247999999999 765544 3333
Q ss_pred HHc--CCcceEEEeeeccCCCcceEEEEeCCee-EEEEeccCChhhhhhccccccccEEEEEeEEEeHHHHHHHHHhccc
Q 012172 237 IQN--KNEYCMEVTPKTLADVKGGTLISYEGKV-QLLEIAQVPDEHVNEFKSIEKFKIFNTNNLWVNLKAIKRLVEADAL 313 (469)
Q Consensus 237 ~~~--~~~~~~~v~~k~~~~~~~G~iv~~~g~~-~ivEy~~~~~e~~~~~~~~~~~~~~Nt~~~~~~l~~L~~~l~~~~~ 313 (469)
++. ..+.++-+++. ..+..+|++..++|++ .++|..+.++++ ....+.|+|.|+|+.+.|.++++.
T Consensus 121 ~~~~~~~~~~~~~~~~-~~~~~~g~v~~~~g~v~~~~ek~~~~~~~-------~~~~~~~~Giy~~~~~~l~~~l~~--- 189 (459)
T 4fce_A 121 LAAKPEGGIGLLTVKL-DNPSGYGRIVRENGDVVGIVEHKDASDAQ-------REINEINTGILVANGRDLKRWLSL--- 189 (459)
T ss_dssp HHHCCTTSEEEEEEEC-SCCTTSCEEEEETTEEEEEECGGGCCTTG-------GGCCEEEEEEEEEEHHHHHHHHHT---
T ss_pred HHHHhhCCEEEEEEec-CCCCcccEEEeCCCcEEEEEECCCCChHH-------hhccEEEEEEEEEEHHHHHHHHHH---
Confidence 332 23444434433 4557789888788887 477766555443 334678999999999999988875
Q ss_pred ccccccCCCcCCCcceehhHHHhhhHhhhcccceeEeecC-ccccccCCchhHHHHHHHHHH------hhcCceeecCCc
Q 012172 314 KMEIIPNPKEVDGIKVLQLETAAGAAIRFFDHAIGCNVHR-SRFLPVKATSDLLLVQSDLYT------LADGFVTRNEAR 386 (469)
Q Consensus 314 ~lp~~~n~K~~~g~~~iqle~~~~d~~~~~~~~~~v~v~r-~eF~pVKn~~dL~~~~~~~~~------l~~g~l~~~~~r 386 (469)
+.+.... +++ .+...+..+...-.++.++..+. +++..|++..||..++..+.. +..++....|..
T Consensus 190 ----~~~~~~~-~~~--~~~d~~~~~~~~g~~v~~~~~~~~~~~~~I~tp~Dl~~ae~~l~~~~~~~l~~~~~~~~~p~~ 262 (459)
T 4fce_A 190 ----LDNNNAQ-GEF--YITDIIALAHADGKKIATVHPTRLSEVEGVNNRLQLSALERVFQTEQAEKLLLAGVMLLDPSR 262 (459)
T ss_dssp ----CCCCSTT-CSC--CTTHHHHHHHHTTCCEEEECCSSGGGGCCCSSHHHHHHHHHHHHHHHHHHHHHHTCEESCGGG
T ss_pred ----hCccccC-CcE--EHHHHHHHHHHCCCeEEEEEcCCHHHhhCCCCHHHHHHHHHHHHHHHHHHHHhCCcEEeCCCe
Confidence 2222111 222 22333333334334566667764 688999999999999877653 233444444432
Q ss_pred cCCCCCeEEECCCcccccccccccccCCcccccCceEEEeeEEECCCcEEeeeEEEE-ecCCCceeeCCCCeeecceecC
Q 012172 387 KNPANPTIELGPEFKKVGNFLSRFKSIPSIIELDSLKVTGDVWFGANITLKGKVTIA-AKSGEKLEIPDGAVLENKEING 465 (469)
Q Consensus 387 ~~~~~p~V~l~~~~~~~~~~~~~i~~~p~~~~~~~l~v~G~v~fg~~V~i~g~~~I~-~~~~~~~~I~~~s~le~~~v~~ 465 (469)
. ...|.+.++++.. | ...++|.|++.+|++|.|+.+|+|. ...|+.+.|.++++|++++|+.
T Consensus 263 ~-~~~~~~~ig~~~~--------i--------~~~~~i~~~~~ig~~~~I~~~~~i~~~~Ig~~~~I~~~~~i~~~~Ig~ 325 (459)
T 4fce_A 263 F-DLRGELTHGRDIT--------I--------DTNVIIEGHVILGDRVRIGTGCVLKNCVIGDDSEISPYTVLEDARLDA 325 (459)
T ss_dssp E-EEEEEEEECSSCE--------E--------CTTEEEEEEEEECTTCEECTTCEEESCEECTTCEECSSCEEESCEECT
T ss_pred E-EEeCcEEECCCcE--------E--------CCCeeeccceEECCCCEECCCCEEeccEECCCCEECCCcEEeCCEECC
Confidence 2 1123344544433 4 2678888889999999999888888 4467778888888888877776
Q ss_pred CCC
Q 012172 466 PGD 468 (469)
Q Consensus 466 ~~~ 468 (469)
+..
T Consensus 326 ~~~ 328 (459)
T 4fce_A 326 NCT 328 (459)
T ss_dssp TCE
T ss_pred CCE
Confidence 654
|
| >2v0h_A Bifunctional protein GLMU; cell WALL, magnesium, cell shape, transferase, peptidoglycan synthesis, associative mechanism; 1.79A {Haemophilus influenzae} PDB: 2v0i_A* 2v0j_A* 2v0k_A* 2v0l_A* 2vd4_A* 2w0v_A* 2w0w_A* 3twd_A* | Back alignment and structure |
|---|
Probab=99.85 E-value=2.4e-19 Score=187.42 Aligned_cols=311 Identities=16% Similarity=0.175 Sum_probs=192.0
Q ss_pred cceeEEEEcCCCCCcCCCCCCccccccCCCCchHHHHHHHHHHhhhhcCCcccEEEecCCCChHHHHHHHHHhcCCCCce
Q 012172 78 DKLVVLKLNGGLGTTMGCTGPKSVIEVRNGLTFLDLIVIQIENLNAKYGCNVPLLLMNSFNTHDDTSKIIEKYSKSNVEI 157 (469)
Q Consensus 78 ~k~avviLAGG~GTRmg~~~PK~l~~v~~gks~L~~~~~~i~~l~~~~~~~iplviMtS~~t~e~t~~~~~~~~g~~~~i 157 (469)
.++.+||||||.||||+...||.|+++ .|+|||++.++++....- -.+++.|++ ..+.+.+++.++ .+
T Consensus 4 ~~~~aiIlA~G~g~Rl~~~~pK~l~~i-~gkpli~~~l~~l~~~~~-----~~iivv~~~-~~~~i~~~~~~~-----~~ 71 (456)
T 2v0h_A 4 KALSAVILAAGKGTRMYSDLPKVLHTI-AGKPMVKHVIDTAHQLGS-----ENIHLIYGH-GGDLMRTHLANE-----QV 71 (456)
T ss_dssp CCEEEEEECCCCCGGGCSSSCGGGSEE-TTEEHHHHHHHHHHHTTC-----SCEEEEECT-THHHHHHHTTTC-----CC
T ss_pred CcceEEEECCCCCcccCCCCCccccEE-CCccHHHHHHHHHHhCCC-----CcEEEEeCC-CHHHHHHHhhcC-----Cc
Confidence 367889999999999998889999999 999999999999987641 134555555 456666665432 24
Q ss_pred EEEEecCcceecCCCCcccCCCCCCCCcccccCCCcccchhccccchHHHHHHcCCcEEEEEeCcc-ccccccH-HHHHH
Q 012172 158 HTFNQSQYPRLCADDFVPLPCKGKTDKDGWYPPGHGDVFPSLMNSGKLDALISQGKEYVFAANSDN-LGAIVDL-KILNH 235 (469)
Q Consensus 158 ~~f~Q~~~P~l~~~~~~~~~~~~~~~~~~~~P~GhGd~~~~L~~sg~L~~l~~~G~~~v~v~n~DN-L~~~~dp-~~Lg~ 235 (469)
.++.|. .+.|+++......+ .+ ...++++++++|+ |....+. .++..
T Consensus 72 ~~v~~~------------------------~~~g~~~~~~~~~~-----~~--~~~~~vlv~~~D~P~i~~~~i~~l~~~ 120 (456)
T 2v0h_A 72 NWVLQT------------------------EQLGTAHAVQQAAP-----FF--KDNENIVVLYGDAPLITKETLEKLIEA 120 (456)
T ss_dssp EEEECS------------------------CCCCHHHHHHHHGG-----GC--CTTSEEEEEETTCTTCCHHHHHHHHHH
T ss_pred EEEeCC------------------------CCCCcHHHHHHHHH-----hc--CCCCeEEEEcCCcceeCHHHHHHHHHH
Confidence 443332 13566554322211 11 1147999999999 7665442 22222
Q ss_pred HHHcCCcceEEEeeeccCCCcceEEEEeCCee-EEEEeccCChhhhhhccccccccEEEEEeEEEeHHHHHHHHHhcccc
Q 012172 236 LIQNKNEYCMEVTPKTLADVKGGTLISYEGKV-QLLEIAQVPDEHVNEFKSIEKFKIFNTNNLWVNLKAIKRLVEADALK 314 (469)
Q Consensus 236 ~~~~~~~~~~~v~~k~~~~~~~G~iv~~~g~~-~ivEy~~~~~e~~~~~~~~~~~~~~Nt~~~~~~l~~L~~~l~~~~~~ 314 (469)
+. ..+.++-+.+ ...+..+|.+..++|++ .++|..+..+++ ......|+|.|+|+.+.|.+.++.
T Consensus 121 ~~--~~~~~~~~~~-~~~~~~~g~v~~~~g~v~~~~ek~~~~~~~-------~~~~~~~~Giy~~~~~~l~~~l~~---- 186 (456)
T 2v0h_A 121 KP--ENGIALLTVN-LDNPTGYGRIIRENGNVVAIVEQKDANAEQ-------LNIKEVNTGVMVSDGASFKKWLAR---- 186 (456)
T ss_dssp CC--TTSEEEEEEE-CSSCTTSCEEEEETTEEEEEECTTTCCHHH-------HTCCEEEEEEEEEEHHHHHHHHTT----
T ss_pred Hh--cCCEEEEEee-cCCCCccceEEEcCCcEEEEEECCCCChhH-------hcCcEEEEEEEEEEHHHHHHHHHH----
Confidence 22 1344333333 34456788777667776 477766655443 234578999999999988887754
Q ss_pred cccccCCCcCCCcceehhHHHhhhHhhhcccceeEeec-CccccccCCchhHHHHHHHHHHh------hcCceeecCCcc
Q 012172 315 MEIIPNPKEVDGIKVLQLETAAGAAIRFFDHAIGCNVH-RSRFLPVKATSDLLLVQSDLYTL------ADGFVTRNEARK 387 (469)
Q Consensus 315 lp~~~n~K~~~g~~~iqle~~~~d~~~~~~~~~~v~v~-r~eF~pVKn~~dL~~~~~~~~~l------~~g~l~~~~~r~ 387 (469)
+...+.. ++. .+...+..+.....++.++.++ .+.|..|++..||..+++.+... ..+.....|...
T Consensus 187 ---~~~~~~~-~~~--~~~d~~~~~~~~g~~v~~~~~~~~~~~~~I~tpeDl~~a~~~l~~~~~~~~~~~~~~~~~~~~~ 260 (456)
T 2v0h_A 187 ---VGNNNAQ-GEY--YLTDLIALANQDNCQVVAVQATDVMEVEGANNRLQLAALERYFQNKQASKLLLEGVMIYDPARF 260 (456)
T ss_dssp ---CCCCSTT-CCC--CGGGHHHHHHHTTCCEEEEECSCTGGGCCCSSHHHHHHHHHHHHHHHHHHHHHTTCEESCGGGE
T ss_pred ---hcccccc-ccE--EHHHHHHHHHHcCCEEEEEEeCCcceEEeCCCHHHHHHHHHHHHHHHHHHHHHcCCEEECCCcc
Confidence 2211111 222 2222222233332345666775 46899999999999988876532 223322233211
Q ss_pred CCCCCeEEECCCcccccccccccccCCcccccCceEEEeeEEECCCcEEeeeEEEE-ecCCCceeeCCCCeeecceecCC
Q 012172 388 NPANPTIELGPEFKKVGNFLSRFKSIPSIIELDSLKVTGDVWFGANITLKGKVTIA-AKSGEKLEIPDGAVLENKEINGP 466 (469)
Q Consensus 388 ~~~~p~V~l~~~~~~~~~~~~~i~~~p~~~~~~~l~v~G~v~fg~~V~i~g~~~I~-~~~~~~~~I~~~s~le~~~v~~~ 466 (469)
...|.+.++++.. |. ..++|.|++.+|+||.|+.+|+|. ...|+.+.|.++++|++++|+.+
T Consensus 261 -~i~~~~~ig~~~~--------I~--------~~~~i~~~~~Ig~~~~I~~~~~i~~~~ig~~~~I~~~~~i~~~~ig~~ 323 (456)
T 2v0h_A 261 -DLRGTLEHGKDVE--------ID--------VNVIIEGNVKLGDRVKIGTGCVLKNVVIGNDVEIKPYSVLEDSIVGEK 323 (456)
T ss_dssp -EEEEEEEECSSCE--------EC--------SSEEEEEEEEECTTCEECTTCEEEEEEECTTCEECSSCEEEEEEECTT
T ss_pred -EEcCceEECCCCE--------Ec--------CCcEEcCCcEECCCCEECCCCEEEeEEEeCCCEEcCCeEEccCcCCCC
Confidence 0123345554433 42 578888888888888888888887 44667777888887777766665
Q ss_pred CC
Q 012172 467 GD 468 (469)
Q Consensus 467 ~~ 468 (469)
..
T Consensus 324 ~~ 325 (456)
T 2v0h_A 324 AA 325 (456)
T ss_dssp CE
T ss_pred cE
Confidence 43
|
| >1hm9_A GLMU, UDP-N-acetylglucosamine-1-phosphate uridyltransfe; acetyltransferase, bifunctional, drug design; HET: ACO UD1; 1.75A {Streptococcus pneumoniae} SCOP: b.81.1.4 c.68.1.5 PDB: 1hm8_A* 1hm0_A* 4ac3_A* 4aaw_A* 1g97_A* 1g95_A* | Back alignment and structure |
|---|
Probab=99.81 E-value=1.7e-18 Score=181.88 Aligned_cols=233 Identities=15% Similarity=0.154 Sum_probs=146.0
Q ss_pred eeEEEEcCCCCCcCCCCCCccccccCCCCchHHHHHHHHHHhhhhcCCcccEEEecCCCChHHHHHHHHHhcCCCCceEE
Q 012172 80 LVVLKLNGGLGTTMGCTGPKSVIEVRNGLTFLDLIVIQIENLNAKYGCNVPLLLMNSFNTHDDTSKIIEKYSKSNVEIHT 159 (469)
Q Consensus 80 ~avviLAGG~GTRmg~~~PK~l~~v~~gks~L~~~~~~i~~l~~~~~~~iplviMtS~~t~e~t~~~~~~~~g~~~~i~~ 159 (469)
-.+||||||.||||+...||.|+++ .|+||+++.++++....- -.+++.|++ ..+.+.+++.+ .+.+
T Consensus 12 ~~~vIlAaG~g~R~~~~~pK~l~~i-~gkpli~~~l~~l~~~g~-----~~iivv~~~-~~~~i~~~~~~------~i~~ 78 (468)
T 1hm9_A 12 NFAIILAAGKGTRMKSDLPKVLHKV-AGISMLEHVFRSVGAIQP-----EKTVTVVGH-KAELVEEVLAG------QTEF 78 (468)
T ss_dssp EEEEEECCCCCGGGCCSSCGGGSEE-TTEEHHHHHHHHHHTTCC-----SEEEEEECT-THHHHHHSSSS------SSEE
T ss_pred CcEEEEcCCCCccCCCCCCcEeeEE-CCccHHHHHHHHHHhcCC-----CCEEEEECC-CHHHHHHHhCC------CcEE
Confidence 4578999999999998889999999 999999999999987631 134555555 44555444421 2444
Q ss_pred EEecCcceecCCCCcccCCCCCCCCcccccCCCcccchhccccchHHHHHHcCCcEEEEEeCcc-ccccccH-HHHHHHH
Q 012172 160 FNQSQYPRLCADDFVPLPCKGKTDKDGWYPPGHGDVFPSLMNSGKLDALISQGKEYVFAANSDN-LGAIVDL-KILNHLI 237 (469)
Q Consensus 160 f~Q~~~P~l~~~~~~~~~~~~~~~~~~~~P~GhGd~~~~L~~sg~L~~l~~~G~~~v~v~n~DN-L~~~~dp-~~Lg~~~ 237 (469)
+.|. .+.|+++.+.... +.+ ....++++++++|+ |....+. .++..+.
T Consensus 79 v~~~------------------------~~~G~~~sl~~a~-----~~~-~~~~~~vlv~~~D~P~i~~~~i~~l~~~~~ 128 (468)
T 1hm9_A 79 VTQS------------------------EQLGTGHAVMMTE-----PIL-EGLSGHTLVIAGDTPLITGESLKNLIDFHI 128 (468)
T ss_dssp EECS------------------------SCCCHHHHHHTTH-----HHH-TTCCSEEEEEETTCTTCCHHHHHHHHHHHH
T ss_pred EeCC------------------------ccCChHHHHHHHH-----HHh-ccCCCeEEEEeCCccccCHHHHHHHHHHHH
Confidence 3332 1456766543221 233 22247999999999 6665443 4555566
Q ss_pred HcCCcceEEEeeeccCCCcceEEEEe-CCee-EEEEeccCChhhhhhccccccccEEEEEeEEEeHHHHHHHHHhccccc
Q 012172 238 QNKNEYCMEVTPKTLADVKGGTLISY-EGKV-QLLEIAQVPDEHVNEFKSIEKFKIFNTNNLWVNLKAIKRLVEADALKM 315 (469)
Q Consensus 238 ~~~~~~~~~v~~k~~~~~~~G~iv~~-~g~~-~ivEy~~~~~e~~~~~~~~~~~~~~Nt~~~~~~l~~L~~~l~~~~~~l 315 (469)
+.++++++.+.+. .++..+|.+..+ +|++ .++|..+.++++ ....+.|+|.|+|+.+.|.+.+++
T Consensus 129 ~~~~~~~i~~~~~-~~~~~~g~v~~d~~g~v~~~~ek~~~~~~~-------~~~~~~~~Giy~f~~~~l~~~l~~----- 195 (468)
T 1hm9_A 129 NHKNVATILTAET-DNPFGYGRIVRNDNAEVLRIVEQKDATDFE-------KQIKEINTGTYVFDNERLFEALKN----- 195 (468)
T ss_dssp HTTCSEEEEEEEC-SCCTTSCEEEECTTCCEEEEECTTTCCTTG-------GGCCEEEEEEEEEEHHHHHHHHTT-----
T ss_pred hcCCcEEEEEecc-CCCCceeEEEECCCCCEEEEEECCCCChHH-------hcCeEEEEEEEEEEHHHHHHHHHh-----
Confidence 6677766555444 445678877654 5665 466654333222 234578999999999988877754
Q ss_pred ccccCCCcCCCcceehhHHHhhhHhhhcccceeEeecC-ccccccCCchhHHHHHHHHH
Q 012172 316 EIIPNPKEVDGIKVLQLETAAGAAIRFFDHAIGCNVHR-SRFLPVKATSDLLLVQSDLY 373 (469)
Q Consensus 316 p~~~n~K~~~g~~~iqle~~~~d~~~~~~~~~~v~v~r-~eF~pVKn~~dL~~~~~~~~ 373 (469)
+...+.. ++. .+...+..++..-.++.++.++. +....|++..|+..++..+.
T Consensus 196 --~~~~~~~-~~~--~~~d~~~~l~~~g~~v~~~~~~g~~~~i~i~t~~dl~~a~~~~~ 249 (468)
T 1hm9_A 196 --INTNNAQ-GEY--YITDVIGIFRETGEKVGAYTLKDFDESLGVNDRVALATAESVMR 249 (468)
T ss_dssp --CCSCSTT-CSC--CTTHHHHHHHHHTCCEEEEECSSGGGGCCCCSHHHHHHHHHHHH
T ss_pred --hccccCC-CeE--EHHHHHHHHHHCCCEEEEEEcCChHHhhCCCCHHHHHHHHHHHH
Confidence 2222111 221 22333333333334566667653 56788999999998887664
|
| >1yp2_A Glucose-1-phosphate adenylyltransferase small subunit; ADP-glucose synthase, ADP-glucose pyrophosphorylase, agpase B; HET: PMB; 2.11A {Solanum tuberosum} SCOP: b.81.1.4 c.68.1.6 PDB: 1yp3_A* 1yp4_A* | Back alignment and structure |
|---|
Probab=99.76 E-value=5.7e-17 Score=169.83 Aligned_cols=256 Identities=14% Similarity=0.153 Sum_probs=142.5
Q ss_pred cceeEEEEcCCCCCcCC---CCCCccccccCCCC-chHHHHHHHHHHhhhhcCCcccEEEecCCCChHHHHHHHHHhcCC
Q 012172 78 DKLVVLKLNGGLGTTMG---CTGPKSVIEVRNGL-TFLDLIVIQIENLNAKYGCNVPLLLMNSFNTHDDTSKIIEKYSKS 153 (469)
Q Consensus 78 ~k~avviLAGG~GTRmg---~~~PK~l~~v~~gk-s~L~~~~~~i~~l~~~~~~~iplviMtS~~t~e~t~~~~~~~~g~ 153 (469)
+++.+||||||+||||+ .+.||.|+|+ .|+ ||+++.++++.+.+-+ .+++.+++ .++.+.+++.+..+.
T Consensus 19 ~~~~avILAaG~gtRl~plT~~~pK~llpi-~g~~pli~~~l~~l~~~g~~-----~i~vv~~~-~~~~i~~~~~~~~~~ 91 (451)
T 1yp2_A 19 RSVLGIILGGGAGTRLYPLTKKRAKPAVPL-GANYRLIDIPVSNCLNSNIS-----KIYVLTQF-NSASLNRHLSRAYAS 91 (451)
T ss_dssp HHEEEEEC------CCTTTTTTSCGGGCEE-TTTEETTHHHHHHHHHTTCC-----EEEEEESC-CCHHHHHHHHHHCC-
T ss_pred cceEEEEECCCCCCcccchhcCCcceeeEE-CCcceeHHHHHHHHHHCCCC-----EEEEEecc-CHHHHHHHHhhhhhc
Confidence 35789999999999999 6789999999 899 9999999999876422 35555565 667888888753220
Q ss_pred CCceE-EEEecCcceecCCCCcccCCCCCCCCcccccCCCcccchhccccchHHHHHHcCCcEEEEEeCccccccccH-H
Q 012172 154 NVEIH-TFNQSQYPRLCADDFVPLPCKGKTDKDGWYPPGHGDVFPSLMNSGKLDALISQGKEYVFAANSDNLGAIVDL-K 231 (469)
Q Consensus 154 ~~~i~-~f~Q~~~P~l~~~~~~~~~~~~~~~~~~~~P~GhGd~~~~L~~sg~L~~l~~~G~~~v~v~n~DNL~~~~dp-~ 231 (469)
++. ++.+..+..+..+ .. ......+.|+|+..... ++.+...+.++++|+++|++... |. .
T Consensus 92 --~~~~~~~~~~v~i~~~~-----~~----~~~~~~~~Gt~~al~~a-----~~~~~~~~~~~~lv~~~D~~~~~-~l~~ 154 (451)
T 1yp2_A 92 --NMGGYKNEGFVEVLAAQ-----QS----PENPDWFQGTADAVRQY-----LWLFEEHTVLEYLILAGDHLYRM-DYEK 154 (451)
T ss_dssp ---------CCEEEEEESC-----SS----TTSCCCCCSHHHHHHHT-----HHHHTTSCCSEEEEECSCEECCC-CHHH
T ss_pred --ccccccccCcEEEeccc-----cc----ccccccccCcHHHHHHH-----HHHHHhcCCCeEEEecCcEEEcC-CHHH
Confidence 010 0011101100000 00 00112256887765432 22332224589999999996543 43 5
Q ss_pred HHHHHHHcCCcceEEEeeec-cCCCcceEEEEe-CCee-EEEEeccCChhhhhhcc------------ccccccEEEEEe
Q 012172 232 ILNHLIQNKNEYCMEVTPKT-LADVKGGTLISY-EGKV-QLLEIAQVPDEHVNEFK------------SIEKFKIFNTNN 296 (469)
Q Consensus 232 ~Lg~~~~~~~~~~~~v~~k~-~~~~~~G~iv~~-~g~~-~ivEy~~~~~e~~~~~~------------~~~~~~~~Nt~~ 296 (469)
++.++.++++++++.+.+.. .++..+|++..+ +|++ .++|..+.++ ...++ ......+.|+|+
T Consensus 155 l~~~~~~~~~~~tl~~~~~~~~~~~~~g~v~~d~~~~v~~~~ekp~~~~--~~~~~~~~~~l~~~~~~~~~~~~~~~~Gi 232 (451)
T 1yp2_A 155 FIQAHRETDADITVAALPMDEKRATAFGLMKIDEEGRIIEFAEKPQGEQ--LQAMKVDTTILGLDDKRAKEMPFIASMGI 232 (451)
T ss_dssp HHHHHHHTTCSEEEEEEEECHHHHTTSEEEEECTTSBEEEEEESCCHHH--HHHTCCCGGGGSCCHHHHHHCCEEEEEEE
T ss_pred HHHHHHHcCCcEEEEEEEcChhhcccCCEEEECCCCCEEEEEECCCchh--hccccccccccccccccccCCcceEEeeE
Confidence 67777777777766554432 245678987764 5666 4666543221 11110 001235779999
Q ss_pred EEEeHHHHHHHHHhcccccccccCCCcCCCcceehhHHHhhhHhhhcccceeEeecCccccccCCchhHHHHHHHHH
Q 012172 297 LWVNLKAIKRLVEADALKMEIIPNPKEVDGIKVLQLETAAGAAIRFFDHAIGCNVHRSRFLPVKATSDLLLVQSDLY 373 (469)
Q Consensus 297 ~~~~l~~L~~~l~~~~~~lp~~~n~K~~~g~~~iqle~~~~d~~~~~~~~~~v~v~r~eF~pVKn~~dL~~~~~~~~ 373 (469)
|+|+.+.|.+++++.. ...... .+.++ ..++..-.++.++.++ ..+..|.+..|+..+++++.
T Consensus 233 y~~~~~~l~~~l~~~~------~~~~~~-~~~~l------~~~i~~g~~v~~~~~~-~~w~digt~~~l~~a~~~l~ 295 (451)
T 1yp2_A 233 YVISKDVMLNLLRDKF------PGANDF-GSEVI------PGATSLGMRVQAYLYD-GYWEDIGTIEAFYNANLGIT 295 (451)
T ss_dssp EEEEHHHHHHHHHTTC------TTCCCT-TTTHH------HHHHHTTCCEEEEECC-SCCEECSSHHHHHHHHHGGG
T ss_pred EEEcHHHHHHHHHhhc------ccccch-HhhHH------HHHHhcCCceEEEEeC-CEEEECCCHHHHHHHHHHHh
Confidence 9999999988876510 011101 11222 1222221234444432 36788999999999887764
|
| >3brk_X Glucose-1-phosphate adenylyltransferase; ADP-glucose pyrophosphorylase, allostery, kinetics, structure-function relationships; 2.10A {Agrobacterium tumefaciens} | Back alignment and structure |
|---|
Probab=99.75 E-value=1.3e-16 Score=165.80 Aligned_cols=338 Identities=11% Similarity=0.073 Sum_probs=189.5
Q ss_pred cceeEEEEcCCCCCcCC---CCCCccccccCCCC-chHHHHHHHHHHhhhhcCCcccEEEecCCCChHHHHHHHHHhcCC
Q 012172 78 DKLVVLKLNGGLGTTMG---CTGPKSVIEVRNGL-TFLDLIVIQIENLNAKYGCNVPLLLMNSFNTHDDTSKIIEKYSKS 153 (469)
Q Consensus 78 ~k~avviLAGG~GTRmg---~~~PK~l~~v~~gk-s~L~~~~~~i~~l~~~~~~~iplviMtS~~t~e~t~~~~~~~~g~ 153 (469)
+++.+||||||.||||+ .+.||.|+|+ .|+ ||+++.++++.+.+-+ .+++.|++ .++.+.+++++..+.
T Consensus 11 ~~~~avILAaG~gtRl~plT~~~pK~llpi-~gk~pli~~~l~~l~~~gi~-----~i~vv~~~-~~~~i~~~~~~~~~~ 83 (420)
T 3brk_X 11 RDAMAYVLAGGRGSRLKELTDRRAKPAVYF-GGKARIIDFALSNALNSGIR-----RIGVATQY-KAHSLIRHLQRGWDF 83 (420)
T ss_dssp GGEEEEEEECCCCGGGGGGGSSSCGGGSEE-TTTEETHHHHHHHHHHTTCC-----EEEEEECT-TCHHHHHHHHHHSCC
T ss_pred hceEEEEEcCCCCCccchhhcCCccccccc-CCCCcHHHHHHHHHHhCCCC-----eEEEEeCC-ChHHHHHHHhhhhcc
Confidence 36789999999999999 7889999999 899 9999999999876411 34555555 568888888763221
Q ss_pred C-----CceEEEEecCcceecCCCCcccCCCCCCCCccccc---CCCcccchhccccchHHHHHHcCCcEEEEEeCcccc
Q 012172 154 N-----VEIHTFNQSQYPRLCADDFVPLPCKGKTDKDGWYP---PGHGDVFPSLMNSGKLDALISQGKEYVFAANSDNLG 225 (469)
Q Consensus 154 ~-----~~i~~f~Q~~~P~l~~~~~~~~~~~~~~~~~~~~P---~GhGd~~~~L~~sg~L~~l~~~G~~~v~v~n~DNL~ 225 (469)
. ..+.+.. + ......| .|+++..... ++.+...+.++++|+++|++.
T Consensus 84 ~~~~~~~~v~i~~-----------------~---~~~~~~~~~~~Gt~~al~~a-----~~~l~~~~~~~~lv~~~D~~~ 138 (420)
T 3brk_X 84 FRPERNESFDILP-----------------A---SQRVSETQWYEGTADAVYQN-----IDIIEPYAPEYMVILAGDHIY 138 (420)
T ss_dssp CCGGGTCEEEEEC-----------------C---C-------CCCCHHHHHHTT-----HHHHHHHCCSEEEEEESSCEE
T ss_pred ccccccCCEEEeC-----------------c---cccccCCccccCCHHHHHHH-----HHHHHhcCCCEEEEecccEEE
Confidence 1 0121110 0 0000012 6777765432 234433345799999999964
Q ss_pred ccccHHHHHHHHHcCCcceEEEeee-ccCCCcceEEEEe-CCee-EEEEeccCChhhhhhccccccccEEEEEeEEEeHH
Q 012172 226 AIVDLKILNHLIQNKNEYCMEVTPK-TLADVKGGTLISY-EGKV-QLLEIAQVPDEHVNEFKSIEKFKIFNTNNLWVNLK 302 (469)
Q Consensus 226 ~~~dp~~Lg~~~~~~~~~~~~v~~k-~~~~~~~G~iv~~-~g~~-~ivEy~~~~~e~~~~~~~~~~~~~~Nt~~~~~~l~ 302 (469)
...--.++..+.++++++++.+.+. ..++..+|++..+ +|++ .++|..+.+... .......+.|+|+|+|+.+
T Consensus 139 ~~~l~~l~~~~~~~~~~~tl~~~~~~~~~~~~~g~v~~d~~g~v~~~~ekp~~~~~~----~~~~~~~~~~~Giy~~~~~ 214 (420)
T 3brk_X 139 KMDYEYMLQQHVDSGADVTIGCLEVPRMEATGFGVMHVNEKDEIIDFIEKPADPPGI----PGNEGFALASMGIYVFHTK 214 (420)
T ss_dssp CBCTHHHHHHHHHTTCSEEEEEEEEETTGGGGSEEEEECTTSBEEEEEESCSSCCCB----TTBTTEEEEEEEEEEEEHH
T ss_pred chHHHHHHHHHHHcCCeEEEEEeecCccccCcccEEEECCCCcEEEeEeCCCccccc----cccccceEEeeeeEEEeHH
Confidence 4322356777777777776665443 2345678988764 5776 466643222110 0112245789999999999
Q ss_pred HHHHHHHhcccccccccCCCcCCCcceehhHHHhhhHhhhcccceeEeec----------CccccccCCchhHHHHHHHH
Q 012172 303 AIKRLVEADALKMEIIPNPKEVDGIKVLQLETAAGAAIRFFDHAIGCNVH----------RSRFLPVKATSDLLLVQSDL 372 (469)
Q Consensus 303 ~L~~~l~~~~~~lp~~~n~K~~~g~~~iqle~~~~d~~~~~~~~~~v~v~----------r~eF~pVKn~~dL~~~~~~~ 372 (469)
.|.+++++ ....+.. .+. + ...++..++... ++.++.++ ...+.-|.+..|+..++.++
T Consensus 215 ~l~~~l~~-------~~~~~~~-~~~-~-~~d~l~~li~~g-~v~~~~~~~~~~~~~~~~~~~~~dI~t~~d~~~a~~~l 283 (420)
T 3brk_X 215 FLMEAVRR-------DAADPTS-SRD-F-GKDIIPYIVEHG-KAVAHRFADSCVRSDFEHEPYWRDVGTIDAYWQANIDL 283 (420)
T ss_dssp HHHHHHTS-------SCCC-------------CTTHHHHHS-CEEEEEHHHHBCCCTTCSSCCEECCCSHHHHHHHHHHT
T ss_pred HHHHHHHH-------hcccCCc-ccc-c-hHHHHHHHhhhC-cEEEEEeccccccccccCCCEEEECCCHHHHHHHHHHH
Confidence 98877754 1111000 000 0 011111122221 34445552 34688999999999988775
Q ss_pred HHhhcCceeecCC-cc---CCCCCeEEECCC----cccccccccccccCCcccccCceEEEeeEEECCCcEEeeeEEEE-
Q 012172 373 YTLADGFVTRNEA-RK---NPANPTIELGPE----FKKVGNFLSRFKSIPSIIELDSLKVTGDVWFGANITLKGKVTIA- 443 (469)
Q Consensus 373 ~~l~~g~l~~~~~-r~---~~~~p~V~l~~~----~~~~~~~~~~i~~~p~~~~~~~l~v~G~v~fg~~V~i~g~~~I~- 443 (469)
.......-...+. .+ ....|.+.+++. -..+. ...|. ....+ ..++|+ ++++|++|+|+.+|+|.
T Consensus 284 l~~~~~~~~~~~~~~i~~~~~i~~~~~i~~~~~~~~~~i~--~~~ig-~~~~I--~~~~i~-~~~ig~~~~I~~~~~i~~ 357 (420)
T 3brk_X 284 TDVVPDLDIYDKSWPIWTYAEITPPAKFVHDDEDRRGSAV--SSVVS-GDCII--SGAALN-RSLLFTGVRANSYSRLEN 357 (420)
T ss_dssp TSSSCSSCTTCCSSCCCCCCCCCCCCEEECBCSSCBCEEE--SCEEC-SSCEE--ESCEEE-SCEECTTCEECTTCEEEE
T ss_pred hCCCchhhcCCCCCceeeccccCCCcEEecccccCCcEec--CCEEC-CCCEE--cCCEEe-CcEEcCCCEECCCCEEcc
Confidence 3221110000000 00 011233444331 00000 11121 11111 122332 48888888888888887
Q ss_pred ecCCCceeeCCCCeeecceecCCCC
Q 012172 444 AKSGEKLEIPDGAVLENKEINGPGD 468 (469)
Q Consensus 444 ~~~~~~~~I~~~s~le~~~v~~~~~ 468 (469)
+..++.+.|.++++|.+++|+.+..
T Consensus 358 ~~i~~~~~i~~~~~i~~~~ig~~~~ 382 (420)
T 3brk_X 358 AVVLPSVKIGRHAQLSNVVIDHGVV 382 (420)
T ss_dssp EEECTTCEECTTCEEEEEEECTTCE
T ss_pred eEEcCCCEECCCCEEeceEECCCCE
Confidence 4467778899999999988887754
|
| >2ggo_A 401AA long hypothetical glucose-1-phosphate thymidylyltransferase; beta barrel; 1.80A {Sulfolobus tokodaii} PDB: 2ggq_A* | Back alignment and structure |
|---|
Probab=99.66 E-value=1.1e-14 Score=149.69 Aligned_cols=307 Identities=12% Similarity=0.081 Sum_probs=169.4
Q ss_pred eEEEEcCCCCCcCC---CCCCccccccCCCCchHHHHHHHHHHhhhhcCCcccEEEecCCCChHHHHHHHHHhcCCCCce
Q 012172 81 VVLKLNGGLGTTMG---CTGPKSVIEVRNGLTFLDLIVIQIENLNAKYGCNVPLLLMNSFNTHDDTSKIIEKYSKSNVEI 157 (469)
Q Consensus 81 avviLAGG~GTRmg---~~~PK~l~~v~~gks~L~~~~~~i~~l~~~~~~~iplviMtS~~t~e~t~~~~~~~~g~~~~i 157 (469)
.+|+||||.||||+ ...||.|+++ .|+||+++.++++.+..-+ .+++.+++. +++++++.. ..+
T Consensus 2 ~aiIlA~G~g~R~~plt~~~~K~ll~i-~g~pli~~~l~~l~~~~~~-----~i~vv~~~~----i~~~~~~~~---~~i 68 (401)
T 2ggo_A 2 KAFILAAGSGERLEPITHTRPKAFVPI-LSKPLIEYQIEYLRKCGIR-----DITVIVSSK----NKEYFEKKL---KEI 68 (401)
T ss_dssp EEEEECCCCCGGGTTGGGTSCGGGCEE-TTEEHHHHHHHHHHHTTCC-----EEEEEECGG----GHHHHHHHC---TTC
T ss_pred eEEEEcCcCccccCcccCCCCcceeeE-CCEeHHHHHHHHHHHCCCC-----EEEEEeCHH----HHHHhhccC---CcE
Confidence 47899999999998 4779999999 9999999999999876411 344544442 667776531 124
Q ss_pred EEEEecCcceecCCCCcccCCCCCCCCcccccCCCcccchhccccchHHHHHHcCCcEEEEEeCccccccccHHHHHHHH
Q 012172 158 HTFNQSQYPRLCADDFVPLPCKGKTDKDGWYPPGHGDVFPSLMNSGKLDALISQGKEYVFAANSDNLGAIVDLKILNHLI 237 (469)
Q Consensus 158 ~~f~Q~~~P~l~~~~~~~~~~~~~~~~~~~~P~GhGd~~~~L~~sg~L~~l~~~G~~~v~v~n~DNL~~~~dp~~Lg~~~ 237 (469)
.++.+.. .|.|.++.+....+ .++++++++|++.. ++..+..++
T Consensus 69 ~~~~~~~-----------------------~~~g~~~~l~~~~~-----------~~~~lv~~~D~~~~--~~~~~~~l~ 112 (401)
T 2ggo_A 69 SIVTQKD-----------------------DIKGTGAAILSAKF-----------NDEALIIYGDLFFS--NEKEICNII 112 (401)
T ss_dssp EEEECCT-----------------------TCCBSTTTGGGCCC-----------SSEEEEEETTEEES--CSHHHHHHT
T ss_pred EEEeCCC-----------------------CCCChHHHHHHhcc-----------CCCEEEEeCccccc--cHHHHHHHH
Confidence 4433321 14566665443321 37899999999322 223355555
Q ss_pred HcCCcceEEEeeeccCCCcceEEEEe-CCee-EEEEeccCChhhhhhccccccccEEEEEeEEEeHHHHHHHHHhccccc
Q 012172 238 QNKNEYCMEVTPKTLADVKGGTLISY-EGKV-QLLEIAQVPDEHVNEFKSIEKFKIFNTNNLWVNLKAIKRLVEADALKM 315 (469)
Q Consensus 238 ~~~~~~~~~v~~k~~~~~~~G~iv~~-~g~~-~ivEy~~~~~e~~~~~~~~~~~~~~Nt~~~~~~l~~L~~~l~~~~~~l 315 (469)
+ ..+..+.+.+. .++.++|.+... +|++ .+.|..+. ....+.|+|.|+++.+.++. +++
T Consensus 113 ~-~~~~~i~~~~~-~~~~~~~~v~~~~~g~v~~~~ek~~~-----------~~~~~~~~Giy~~~~~~~~~-l~~----- 173 (401)
T 2ggo_A 113 T-LKENAIIGVKV-SNPKDYGVLVLDNQNNLSKIIEKPEI-----------PPSNLINAGIYKLNSDIFTY-LDK----- 173 (401)
T ss_dssp T-CSSEEEEEEEC-SCCSSSCEEEECTTSSEEEEECSCSS-----------CSCSEEEEEEEEEETHHHHH-HHH-----
T ss_pred H-hcCCEEEEEEc-CCCcceeEEEECCCCeEEEEEECCCC-----------CCCcEEEEEEEEEcHHHHHH-hhh-----
Confidence 4 34444444433 445567876654 4655 34442211 12357899999999998754 443
Q ss_pred ccccCCCcCCCcceehhHHHhhhHhhhcccceeEeecCccccccCCchhHHHHHHHHHHhhcCc----eeecCCccCCCC
Q 012172 316 EIIPNPKEVDGIKVLQLETAAGAAIRFFDHAIGCNVHRSRFLPVKATSDLLLVQSDLYTLADGF----VTRNEARKNPAN 391 (469)
Q Consensus 316 p~~~n~K~~~g~~~iqle~~~~d~~~~~~~~~~v~v~r~eF~pVKn~~dL~~~~~~~~~l~~g~----l~~~~~r~~~~~ 391 (469)
+... ..++ +.+...+..+ ....++.++..+. .|.-|++.+|+..+++.+....... .....+. ..
T Consensus 174 --~~~~--~~~~--~~~~~~~~~~-~~g~~v~~~~~~~-~~~dI~t~edl~~a~~~l~~~~~~~~~~~~i~~~~~---i~ 242 (401)
T 2ggo_A 174 --ISIS--ERGE--LELTDAINLM-AKDHRVKVIEYEG-YWMDIGKPWNIIDVNKWALDNLVFSQNLGNVEDNVK---IK 242 (401)
T ss_dssp --SCCC--SSSC--BCHHHHHHHH-HHHSCEEEEECCS-CEEECCSHHHHHHHHHHHHHHTCCCEECSEECSSCE---EE
T ss_pred --cCcC--CCCc--eEHHHHHHHH-HCCCcEEEEEecc-eEEcCCCHHHHHHHHHHHHHhcccccccceeCCCCE---Ec
Confidence 1110 1122 2222332222 2223444455443 7889999999999988875432211 0111111 11
Q ss_pred CeEEECCCcccccccccccccCCcccc----cCceEEEeeEEECCCcEEeeeEEEE-ecCCCceeeCCCCeeecceecCC
Q 012172 392 PTIELGPEFKKVGNFLSRFKSIPSIIE----LDSLKVTGDVWFGANITLKGKVTIA-AKSGEKLEIPDGAVLENKEINGP 466 (469)
Q Consensus 392 p~V~l~~~~~~~~~~~~~i~~~p~~~~----~~~l~v~G~v~fg~~V~i~g~~~I~-~~~~~~~~I~~~s~le~~~v~~~ 466 (469)
|.+.+++... +.. ...+.+.-.|-+ ...++|.+++++|++|.|+.+|.|. +..++.+.|.+++++++++|+.+
T Consensus 243 ~~~~ig~~~~-I~~-~~~i~~~~~Ig~~~~I~~~~~i~~~~~Ig~~~~ig~~~~i~~~~i~~~~~i~~~~~i~~~~Ig~~ 320 (401)
T 2ggo_A 243 GKVIIEEDAE-IKS-GTYIEGPVYIGKGSEIGPNSYLRPYTILVEKNKIGASVEVKESVIMEGSKIPHLSYVGDSVIAED 320 (401)
T ss_dssp SCEEECTTCE-ECT-TCEEESSEEECTTCEECSSCEECTTEEECSSCEEEETCEEESEEECTTCEEEESCEEESCEECTT
T ss_pred CCeEEcCCCE-ECC-CCEEeCCeEECCCCEECCCCEEcCCcEECCCCEECCCCEEecCEEcCCcEECCCceEcceEECCC
Confidence 2234433311 000 000100000000 1345566677777777777777775 33556667777777777777665
Q ss_pred CC
Q 012172 467 GD 468 (469)
Q Consensus 467 ~~ 468 (469)
..
T Consensus 321 ~~ 322 (401)
T 2ggo_A 321 VN 322 (401)
T ss_dssp CE
T ss_pred cE
Confidence 43
|
| >3oam_A 3-deoxy-manno-octulosonate cytidylyltransferase; center for structural genomics of infectious diseases; 1.75A {Vibrio cholerae o1 biovar el tor} SCOP: c.68.1.13 | Back alignment and structure |
|---|
Probab=99.61 E-value=1.4e-15 Score=147.73 Aligned_cols=235 Identities=11% Similarity=0.093 Sum_probs=145.3
Q ss_pred ceeEEEEcCCCCCcCCCCCCccccccCCCCchHHHHHHHHHHhhhhcCCcccEEEecCCCChHHHHHHHHHhcCCCCceE
Q 012172 79 KLVVLKLNGGLGTTMGCTGPKSVIEVRNGLTFLDLIVIQIENLNAKYGCNVPLLLMNSFNTHDDTSKIIEKYSKSNVEIH 158 (469)
Q Consensus 79 k~avviLAGG~GTRmg~~~PK~l~~v~~gks~L~~~~~~i~~l~~~~~~~iplviMtS~~t~e~t~~~~~~~~g~~~~i~ 158 (469)
++.+||||||.||||+ ||.|+++ .||||++|+++++...+-. .+++.| .++.+.++++++ | .++.
T Consensus 2 ~~~aiIlA~G~stRlp---~K~L~~i-~GkPli~~~l~~l~~~~~~-----~ivVv~---~~~~i~~~~~~~-g--~~v~ 66 (252)
T 3oam_A 2 SFTVVIPARYQSTRLP---GKPLADI-GGKPMIQWVYEQAMQAGAD-----RVIIAT---DDERVEQAVQAF-G--GVVC 66 (252)
T ss_dssp CEEEEEECCCCCSSST---TGGGCEE-TTEEHHHHHHHHHHHTTCS-----EEEEEE---SCHHHHHHHHHT-T--CEEE
T ss_pred ceEEEEecCcCCCCCC---CcceeeE-CCEEHHHHHHHHHHhCCCC-----eEEEEC---CHHHHHHHHHHc-C--CEEE
Confidence 6789999999999995 8999999 9999999999999876421 345544 258888888763 1 2222
Q ss_pred EEEecCcceecCCCCcccCCCCCCCCcccccCCCcccchhccccchHHHHHHcCCcEEEEEeCcc-ccccccH-HHHHHH
Q 012172 159 TFNQSQYPRLCADDFVPLPCKGKTDKDGWYPPGHGDVFPSLMNSGKLDALISQGKEYVFAANSDN-LGAIVDL-KILNHL 236 (469)
Q Consensus 159 ~f~Q~~~P~l~~~~~~~~~~~~~~~~~~~~P~GhGd~~~~L~~sg~L~~l~~~G~~~v~v~n~DN-L~~~~dp-~~Lg~~ 236 (469)
+..|. .|.|+|+++.++. .+...+.++++++++|+ |....+. .++..+
T Consensus 67 ~~~~~------------------------~~~Gt~~~~~~~~------~l~~~~~d~vlv~~gD~Pli~~~~i~~l~~~~ 116 (252)
T 3oam_A 67 MTSPN------------------------HQSGTERLAEVVA------KMAIPADHIVVNVQGDEPLIPPAIIRQVADNL 116 (252)
T ss_dssp ECCTT------------------------CCSHHHHHHHHHH------HTTCCTTSEEEECCTTCTTCCHHHHHHHHHHH
T ss_pred EcCCC------------------------CCCcHHHHHHHHH------hcCcCCCCEEEEEeCCeeecCHHHHHHHHHHH
Confidence 11121 3678888654432 22112457999999999 7765443 455666
Q ss_pred HHcCCcceEEEeeeccCCCcc-----eEEEE-eCCeeEEEEecc--CChhhhhhccc----cccccEEEEEeEEEeHHHH
Q 012172 237 IQNKNEYCMEVTPKTLADVKG-----GTLIS-YEGKVQLLEIAQ--VPDEHVNEFKS----IEKFKIFNTNNLWVNLKAI 304 (469)
Q Consensus 237 ~~~~~~~~~~v~~k~~~~~~~-----G~iv~-~~g~~~ivEy~~--~~~e~~~~~~~----~~~~~~~Nt~~~~~~l~~L 304 (469)
.++++++++.+++-. +++.+ |+++. .+|++ +..+. ++.. .+.+.. .....+.|+|+|+|+.++|
T Consensus 117 ~~~~~~~~~~~~~v~-~~~~~~~p~~g~vv~d~~g~v--~~fsr~~i~~~-~~~~~~~~~~~~~~~~~n~GiY~~~~~~l 192 (252)
T 3oam_A 117 AACSAPMATLAVEIE-DEAEVFNPNAVKVITDKSGYA--LYFSRATIPWD-RDNFAKADKAIVQPLLRHIGIYAYRAGFI 192 (252)
T ss_dssp HHSSCSEEEEEEEEC-CHHHHTCTTSCEEEECTTSBE--EEEESSCSSCC-HHHHHSSSCCCCSCEEEEEEEEEEETTHH
T ss_pred HhcCCCEEEEeeecC-CHHHhhCCCceEEEECCCCeE--EEEeCCCCCCC-CCccccccccccccceEEEEEEEcCHHHH
Confidence 666667666555443 33444 77766 46765 33332 2211 111100 0124567999999999999
Q ss_pred HHHHHhcccccccccCCCcCCCcceehhHHHhhhHhhhcccceeEeecCccccccCCchhHHHHHHHHHHh
Q 012172 305 KRLVEADALKMEIIPNPKEVDGIKVLQLETAAGAAIRFFDHAIGCNVHRSRFLPVKATSDLLLVQSDLYTL 375 (469)
Q Consensus 305 ~~~l~~~~~~lp~~~n~K~~~g~~~iqle~~~~d~~~~~~~~~~v~v~r~eF~pVKn~~dL~~~~~~~~~l 375 (469)
+.+.... .+.... .| .||... ++..-.++.++.++..++.+|+++.||+.+++.++..
T Consensus 193 ~~~~~~~-------~~~~e~-~E---~le~lr--~l~~G~~i~~~~~~~~~~~~idt~~dl~~a~~~~~~r 250 (252)
T 3oam_A 193 NTYLDWQ-------PSQLEK-IE---CLEQLR--VLWHGEKIHVAVALEAPPAGVDTPEDLEVVRRIVAER 250 (252)
T ss_dssp HHHHHSC-------CCHHHH-HH---TCTTHH--HHHTTCCEEEEECSSCCCCCCCSHHHHHHHHHHHHHT
T ss_pred HHHHcCC-------CCcccc-cc---hhHHHH--HHHCCCeEEEEEecCCCCCCCCCHHHHHHHHHHHHhh
Confidence 9987531 011100 12 112111 1222234555545556899999999999999887653
|
| >3pnn_A Conserved domain protein; structural genomics, PSI-biology, protein structure initiati midwest center for structural genomics, MCSG; HET: MSE GOL; 1.90A {Porphyromonas gingivalis} | Back alignment and structure |
|---|
Probab=99.60 E-value=5e-14 Score=140.52 Aligned_cols=267 Identities=14% Similarity=0.086 Sum_probs=160.8
Q ss_pred cceeEEEEcCCCCCcCCCCCCccccccC-CCCchHHHHHHHHHHhhhhcCCcccEEEecCCCChHHHHHHHHHhcCCCCc
Q 012172 78 DKLVVLKLNGGLGTTMGCTGPKSVIEVR-NGLTFLDLIVIQIENLNAKYGCNVPLLLMNSFNTHDDTSKIIEKYSKSNVE 156 (469)
Q Consensus 78 ~k~avviLAGG~GTRmg~~~PK~l~~v~-~gks~L~~~~~~i~~l~~~~~~~iplviMtS~~t~e~t~~~~~~~~g~~~~ 156 (469)
+++.+||||||+||||+. ||.|+|+. .|+|++++.++++...+-. .+++.|++...+.++++|........+
T Consensus 4 m~~~~vIlAaG~g~R~~~--~K~l~~ig~~g~pli~~~l~~~~~~~~~-----~i~vv~~~~~~~~~~~~~~~~~~~~~~ 76 (303)
T 3pnn_A 4 MKPTLFVLAAGMGSRYGS--LKQLDGIGPGGDTIMDYSVYDAIRAGFG-----RLVFVIRHSFEKEFREKILTKYEGRIP 76 (303)
T ss_dssp CCCEEEEECTTCBCTTSS--BCCCCCCSTTSCCHHHHHHHHHHHHTCC-----EEEEEECGGGHHHHHHHTHHHHTTTSC
T ss_pred CceEEEEECCCCcccCCC--CceEeEcCCCCeeHHHHHHHHHHHCCCC-----eEEEEcCchHHHHHHHHHHHHhccCCc
Confidence 357889999999999997 89999995 6999999999998776421 345555653247888888753222235
Q ss_pred eEEEEecCcceecCCCCcccCCCCCCCCcccccCCCcccchhccccchHHHHHHcCCcEEEEEeCccccccccH-HHHHH
Q 012172 157 IHTFNQSQYPRLCADDFVPLPCKGKTDKDGWYPPGHGDVFPSLMNSGKLDALISQGKEYVFAANSDNLGAIVDL-KILNH 235 (469)
Q Consensus 157 i~~f~Q~~~P~l~~~~~~~~~~~~~~~~~~~~P~GhGd~~~~L~~sg~L~~l~~~G~~~v~v~n~DNL~~~~dp-~~Lg~ 235 (469)
+.+..|.... +.....+.. ....|.|+|++.....+. + -+.++|+|+|++....+. .++.+
T Consensus 77 i~~~~~~~~~-~~~~~~~~~--------~~~~~~Gt~~al~~a~~~-----i----~~~~lV~~gD~l~~~~~~~~l~~~ 138 (303)
T 3pnn_A 77 VELVFQELDR-LPEGFSCPE--------GREKPWGTNHAVLMGRDA-----I----REPFAVINADDFYGRNGFEVLARK 138 (303)
T ss_dssp EEEEECCTTC-CCTTCCCCT--------TCCSCCCHHHHHHTTTTT-----C----CSCEEEEESSCBCCHHHHHHHHHH
T ss_pred EEEEeccccc-ccccccccc--------cccccCCcHHHHHHHHHh-----c----CCCEEEEECCeecCHHHHHHHHHH
Confidence 7777787321 111111111 112478999886544331 1 256889999997643222 35566
Q ss_pred HHH---cCCcceEEEeeeccCCCcc-----eEEEEe-CCee-EEEEeccCChhhh----hhccc----cccccEEEEEeE
Q 012172 236 LIQ---NKNEYCMEVTPKTLADVKG-----GTLISY-EGKV-QLLEIAQVPDEHV----NEFKS----IEKFKIFNTNNL 297 (469)
Q Consensus 236 ~~~---~~~~~~~~v~~k~~~~~~~-----G~iv~~-~g~~-~ivEy~~~~~e~~----~~~~~----~~~~~~~Nt~~~ 297 (469)
+.+ .++++++.+.+..++-..+ |++..+ +|++ .++|..+.++++- .+.++ .....+.|+|.|
T Consensus 139 ~~~~~~~~~~~~v~~~~~~~~~~~~g~~~~G~v~~d~~g~v~~i~Ekp~~~~~~~~~~~~~~~g~~~~~~~~~~i~~GiY 218 (303)
T 3pnn_A 139 LMTLEGKQGEYCMVGYRVGNTLSESGGVSRGVCQVDEKHLLTGVVERTGIERTDGTISFRDETGKICTLAEDAPVSMNMW 218 (303)
T ss_dssp HHTTTTCSSEEEEEEEEGGGSCBTTBCEEEEEEEECTTSBEEEEEEEEEEEEETTEEEEECTTSCEEEECTTCEEEEEEE
T ss_pred HHHhccccCceEEEEEECCCccCccCceeeeeEeeCCCCcEEEEEECCCCccccccccccccccccccCCCCCEEEEEEE
Confidence 654 3456655554443441444 566655 6887 5888876542110 00000 013568899999
Q ss_pred EEeHHHHHHHHHhcccccccc--cCCCcCCCcceehhHHHhhhHhhhcc-cceeEeecCccccccCCchhHHHHHHHHHH
Q 012172 298 WVNLKAIKRLVEADALKMEII--PNPKEVDGIKVLQLETAAGAAIRFFD-HAIGCNVHRSRFLPVKATSDLLLVQSDLYT 374 (469)
Q Consensus 298 ~~~l~~L~~~l~~~~~~lp~~--~n~K~~~g~~~iqle~~~~d~~~~~~-~~~~v~v~r~eF~pVKn~~dL~~~~~~~~~ 374 (469)
+|+.+.+..+-... ..++ .+.+ ..++ +.+..++..++..-. ++.++..+ ..+..|+++.|++.+++.++.
T Consensus 219 ~f~~~~~~~l~~~~---~~~l~~~~~~-~~~e--~~l~d~i~~li~~g~~~v~~~~~~-g~w~dIgt~~dl~~a~~~l~~ 291 (303)
T 3pnn_A 219 GFTPDYFDYSEELF---INFLNAHGQE-PKSE--FFIPFVVNDLIRSGRASVEVLDTT-ARWFGVTYSDDRPGVVAKLRE 291 (303)
T ss_dssp EECTHHHHHHHHHH---HHHHHHHTTC-SSCC--CCHHHHHHHHHHHTSCEEEEEECS-CCCBCCSSGGGHHHHHHHHHH
T ss_pred EECHHHHHHHHHHH---HHHHHhcCCC-cCCc--EEhHHHHHHHHHcCCCcEEEEEeC-CceECCCCHHHHHHHHHHHHH
Confidence 99998865442210 0001 1111 1133 445566665555533 45555543 579999999999999999886
Q ss_pred hh
Q 012172 375 LA 376 (469)
Q Consensus 375 l~ 376 (469)
+.
T Consensus 292 ~~ 293 (303)
T 3pnn_A 292 LT 293 (303)
T ss_dssp HH
T ss_pred HH
Confidence 53
|
| >4evw_A Nucleoside-diphosphate-sugar pyrophosphorylase; structural genomics, PSI-biology; HET: MSE; 1.90A {Vibrio cholerae} | Back alignment and structure |
|---|
Probab=99.57 E-value=1e-14 Score=142.04 Aligned_cols=231 Identities=14% Similarity=0.093 Sum_probs=138.9
Q ss_pred EEEEcCCCCCcCCC---CCCccccccCCCCchHHHHHHHHHH-hhhhcCCcccEEEecCCCChHHHHHHHHHhc---CCC
Q 012172 82 VLKLNGGLGTTMGC---TGPKSVIEVRNGLTFLDLIVIQIEN-LNAKYGCNVPLLLMNSFNTHDDTSKIIEKYS---KSN 154 (469)
Q Consensus 82 vviLAGG~GTRmg~---~~PK~l~~v~~gks~L~~~~~~i~~-l~~~~~~~iplviMtS~~t~e~t~~~~~~~~---g~~ 154 (469)
+||||||+||||+. +.||.|+|+ .|||||+++++++.. .+-+ .+++.+++ .++ +.++++++. +.+
T Consensus 2 ~iIlAaG~GtRl~plt~~~PK~llpv-~gkpli~~~l~~l~~~~gi~-----~iivv~~~-~~~-~~~~~~~~~~~~~~~ 73 (255)
T 4evw_A 2 IVIPMAGMSSRFFKAGYTQPKYMLEA-HGQTLFEHSVNSFAAYFAST-----PFLFIVRN-VYD-TAVFVREKATQLGIK 73 (255)
T ss_dssp EEEECCSCCHHHHHTTCCSCGGGCEE-TTEEHHHHHHGGGGGGTTTS-----CEEEEEES-STT-HHHHHHHHHHHHTCS
T ss_pred EEEEcCCCCcccccCCCCCCccccEE-CCeEHHHHHHHHHhccCCCc-----eEEEEECc-hhh-hHHHHHHHHHHcCCC
Confidence 68999999999974 679999999 999999999999877 3322 33333455 344 556665421 111
Q ss_pred CceEEEEecCcceecCCCCcccCCCCCCCCcccccCCCcccchhccccchHHHHHH---cCCcEEEEEeCccccccccHH
Q 012172 155 VEIHTFNQSQYPRLCADDFVPLPCKGKTDKDGWYPPGHGDVFPSLMNSGKLDALIS---QGKEYVFAANSDNLGAIVDLK 231 (469)
Q Consensus 155 ~~i~~f~Q~~~P~l~~~~~~~~~~~~~~~~~~~~P~GhGd~~~~L~~sg~L~~l~~---~G~~~v~v~n~DNL~~~~dp~ 231 (469)
.-..++.|. .|.|+|+...... +.+.+ .+-+.++|+++|++....+..
T Consensus 74 ~~~~~~~~~------------------------~~~Gt~~av~~a~-----~~l~~~~~~~~~~~lV~~gD~l~~~~~~~ 124 (255)
T 4evw_A 74 QFYIAELHT------------------------ETRGQAETVTLGL-----EELAKQGVDYQGSITVFNIDTFRPNFVFP 124 (255)
T ss_dssp SEEEEEESS------------------------CCSSHHHHHHHHH-----HHHHHTTCCCCSCEEECCTTEECTTCCCC
T ss_pred CceEEEeCC------------------------CCCCHHHHHHHHH-----HHHhhcccCCCCcEEEEeCCEEEecchhH
Confidence 111233343 2678888754332 23321 234679999999966433311
Q ss_pred HHHHHHHcCCcceEEEeeeccCCCcceEEEEe-CC--ee-EEEEeccCChhhhhhccccccccEEEEEeEEEeHH-HHHH
Q 012172 232 ILNHLIQNKNEYCMEVTPKTLADVKGGTLISY-EG--KV-QLLEIAQVPDEHVNEFKSIEKFKIFNTNNLWVNLK-AIKR 306 (469)
Q Consensus 232 ~Lg~~~~~~~~~~~~v~~k~~~~~~~G~iv~~-~g--~~-~ivEy~~~~~e~~~~~~~~~~~~~~Nt~~~~~~l~-~L~~ 306 (469)
- + .++++..+.+... ..+ ++|++..+ +| ++ .++|.... -.+.|+|.|+|+.. .+.+
T Consensus 125 ~---~-~~~~~~~i~~~~~-~~p-~yG~v~~d~~g~~~V~~i~EK~~~-------------s~~~~~GiY~f~~~~~~~~ 185 (255)
T 4evw_A 125 D---I-SQHSDGYLEVFQG-GGD-NWSFAKPEHAGSTKVIQTAEKNPI-------------SDLCSTGLYHFNRKEDYLE 185 (255)
T ss_dssp G---G-GGSSSEEEEEEEC-CSS-CSCEEEESSTTCCBEEEEESSSCS-------------SSEEEEEEEEESCHHHHHH
T ss_pred H---H-hhcCCcEEEEEec-CCC-ceeEEEECCCCCeEEEEEEeccCc-------------cCcEEEeEEEECcHHHHHH
Confidence 1 1 2455655544433 334 89988875 56 66 46665221 24789999999975 3444
Q ss_pred HHHhcccccccccCCCcC--CCcceehhHHHhhhHhhhcccceeEeecCccccccCCchhHHHHHHHHHHhh
Q 012172 307 LVEADALKMEIIPNPKEV--DGIKVLQLETAAGAAIRFFDHAIGCNVHRSRFLPVKATSDLLLVQSDLYTLA 376 (469)
Q Consensus 307 ~l~~~~~~lp~~~n~K~~--~g~~~iqle~~~~d~~~~~~~~~~v~v~r~eF~pVKn~~dL~~~~~~~~~l~ 376 (469)
++.+ ++.+.+.. ++++ .+...+..+++.-.++.++.+++..+..|.+..||..+++.-|-++
T Consensus 186 ~l~~------~i~~~~~~~~~gE~--~ltd~i~~li~~g~~v~~~~~~~~~w~digt~~~l~~~~~~~~~~~ 249 (255)
T 4evw_A 186 AYRE------YVARPSQEWERGEL--YIAPLYNELIQKGLNIHYHLIARHEVIFCGVPDEYTDFLRQPQPLE 249 (255)
T ss_dssp HHHH------HHTSCGGGCSCSCC--CSTTHHHHHHHTTCCEEEEECCGGGCEECCSHHHHHHHHHC-----
T ss_pred HHHH------HHhcccccccCCeE--ehHHHHHHHHHCCCEEEEEEeccccEEECCCHHHHHHHHhcCCcch
Confidence 5443 12222221 2443 3344444455444456667776678999999999999987766554
|
| >4ecm_A Glucose-1-phosphate thymidylyltransferase; HET: DAU; 2.30A {Bacillus anthracis} PDB: 3hl3_A* | Back alignment and structure |
|---|
Probab=99.54 E-value=3.4e-13 Score=131.82 Aligned_cols=233 Identities=10% Similarity=0.048 Sum_probs=147.7
Q ss_pred ceeEEEEcCCCCCcCCC---CCCccccccCCCCchHHHHHHHHHHhhhhcCCcccEEEecCCCChHHHHHHHHHhcCCCC
Q 012172 79 KLVVLKLNGGLGTTMGC---TGPKSVIEVRNGLTFLDLIVIQIENLNAKYGCNVPLLLMNSFNTHDDTSKIIEKYSKSNV 155 (469)
Q Consensus 79 k~avviLAGG~GTRmg~---~~PK~l~~v~~gks~L~~~~~~i~~l~~~~~~~iplviMtS~~t~e~t~~~~~~~~g~~~ 155 (469)
++.+||||||.||||+. ..||.|+|+ .|+||++++++++...+- -.++|.|++...+.+.+++......+.
T Consensus 24 ~m~aiIlAaG~g~Rl~~lt~~~pK~ll~i-~g~pli~~~l~~l~~~g~-----~~iivv~~~~~~~~~~~~~~~~~~~~~ 97 (269)
T 4ecm_A 24 AMKGIILAGGTGSRLYPITKVTNKHLLPV-GRYPMIYHAVYKLKQCDI-----TDIMIITGKEHMGDVVSFLGSGQEFGV 97 (269)
T ss_dssp CEEEEEECCSCCGGGTTTTSSSCGGGSEE-TTEEHHHHHHHHHHHTTC-----CEEEEEECTTTHHHHHHHHTTSGGGTC
T ss_pred CcEEEEECCCCccccccccCCCCceecEE-CCEEHHHHHHHHHHHCCC-----CEEEEECChhhHHHHHHHHhhccccCc
Confidence 57899999999999997 889999999 999999999999987641 134555555334667777753111112
Q ss_pred ceEEEEecCcceecCCCCcccCCCCCCCCcccccCCCcccchhccccchHHHHHHcCCcEEEEEeCccccccccHHHHHH
Q 012172 156 EIHTFNQSQYPRLCADDFVPLPCKGKTDKDGWYPPGHGDVFPSLMNSGKLDALISQGKEYVFAANSDNLGAIVDLKILNH 235 (469)
Q Consensus 156 ~i~~f~Q~~~P~l~~~~~~~~~~~~~~~~~~~~P~GhGd~~~~L~~sg~L~~l~~~G~~~v~v~n~DNL~~~~dp~~Lg~ 235 (469)
++.+..|. .+.|+|+...... +.+ . .++++|+++|++....--.++..
T Consensus 98 ~i~~~~~~------------------------~~~G~~~al~~a~-----~~~-~--~~~~lv~~~D~~~~~~l~~l~~~ 145 (269)
T 4ecm_A 98 SFTYRVQD------------------------KAGGIAQALGLCE-----DFV-G--NDRMVVILGDNIFSDDIRPYVEE 145 (269)
T ss_dssp EEEEEECS------------------------SCCCHHHHHHTTH-----HHH-T--TSEEEEEETTEEESSCSHHHHHH
T ss_pred eEEEeeCC------------------------ccCcHHHHHHHHH-----Hhc-C--CCcEEEEeCCccCccCHHHHHHH
Confidence 34443332 2467777654322 222 2 47999999999444322356777
Q ss_pred HHHcCCcceEEEeeeccCCCcceEEEEeCCeeE-EEEeccCChhhhhhccccccccEEEEEeEEEeHHHHHHHHHhcccc
Q 012172 236 LIQNKNEYCMEVTPKTLADVKGGTLISYEGKVQ-LLEIAQVPDEHVNEFKSIEKFKIFNTNNLWVNLKAIKRLVEADALK 314 (469)
Q Consensus 236 ~~~~~~~~~~~v~~k~~~~~~~G~iv~~~g~~~-ivEy~~~~~e~~~~~~~~~~~~~~Nt~~~~~~l~~L~~~l~~~~~~ 314 (469)
+.++++++++.+.+. .++..+|++...+|++. +.|..+. ....+.|+|+|+|+.+.+ +.+.+
T Consensus 146 ~~~~~~~~~~~~~~~-~~~~~~g~v~~d~g~v~~~~ekp~~-----------~~~~~~~~Giy~~~~~~l-~~l~~---- 208 (269)
T 4ecm_A 146 FTNQKEGAKVLLQSV-DDPERFGVANIQNRKIIEIEEKPKE-----------PKSSYAVTGIYLYDSKVF-SYIKE---- 208 (269)
T ss_dssp HHTSSSSEEEEEEEC-SCGGGSEEEEEETTEEEEEEESCSS-----------CSCSEEEEEEEEECTTHH-HHHTS----
T ss_pred HHhcCCCeEEEEEEC-CCCCCceEEEEcCCEEEEEEECCCC-----------CCCcEEEEEEEEECHHHH-Hhhhh----
Confidence 776777776666544 45677898888888774 5553211 234578999999998877 44432
Q ss_pred cccccCCCcCCCcceehhHHHhhhHhhhcccceeEeecCccccccCCchhHHHHHHHHHHh
Q 012172 315 MEIIPNPKEVDGIKVLQLETAAGAAIRFFDHAIGCNVHRSRFLPVKATSDLLLVQSDLYTL 375 (469)
Q Consensus 315 lp~~~n~K~~~g~~~iqle~~~~d~~~~~~~~~~v~v~r~eF~pVKn~~dL~~~~~~~~~l 375 (469)
..+. ..++ +.+...+...+... ++.++.. ...+.-|.+..|+..++..+...
T Consensus 209 ---~~~~--~~ge--~~l~d~l~~l~~~g-~v~~~~~-~~~~~dIgt~~dl~~a~~~l~~~ 260 (269)
T 4ecm_A 209 ---LKPS--ARGE--LEITDINNWYLKRG-VLTYNEM-SGWWTDAGTHVSLQRANALARDI 260 (269)
T ss_dssp ---CCBC--TTSC--BCHHHHHHHHHHTT-CEEEEEC-CSCEEECSSHHHHHHHHHHTTTC
T ss_pred ---cCCC--CCCe--eeHHHHHHHHHHcC-CEEEEEe-CCEEEeCCCHHHHHHHHHHHHhc
Confidence 1111 1133 22333444333332 3333333 34688999999999998876543
|
| >3juk_A UDP-glucose pyrophosphorylase (GALU); transfer; HET: UPG; 2.30A {Helicobacter pylori} PDB: 3juj_A* | Back alignment and structure |
|---|
Probab=99.52 E-value=5e-13 Score=131.14 Aligned_cols=233 Identities=11% Similarity=0.102 Sum_probs=146.3
Q ss_pred ceeEEEEcCCCCCcCCC---CCCccccccCCCCchHHHHHHHHHHhhhhcCCcccEEEecCCCChHHHHHHHHHhcCC--
Q 012172 79 KLVVLKLNGGLGTTMGC---TGPKSVIEVRNGLTFLDLIVIQIENLNAKYGCNVPLLLMNSFNTHDDTSKIIEKYSKS-- 153 (469)
Q Consensus 79 k~avviLAGG~GTRmg~---~~PK~l~~v~~gks~L~~~~~~i~~l~~~~~~~iplviMtS~~t~e~t~~~~~~~~g~-- 153 (469)
.+.+||||||.||||+. ..||.|+|+ .|+||++++++++...+-+ .++|.|++ ..+.+.++|......
T Consensus 2 ~~~avIlAaG~gtRl~plt~~~pK~ll~i-~gkpli~~~l~~l~~~gi~-----~i~vv~~~-~~~~i~~~~~~~~~l~~ 74 (281)
T 3juk_A 2 IKKCLFPAAGYGTRFLPITKTIPKEMLPI-VDKPLIQYAVEEAMEAGCE-----VMAIVTGR-NKRSLEDYFDTSYEIEH 74 (281)
T ss_dssp CCEEEEECCSCCGGGTTGGGTSCGGGCBS-SSSBHHHHHHHHHHHHTCC-----EEEEEECT-THHHHHHHTSCCC----
T ss_pred ceEEEEECCcCCcccCccccCCCcccceE-CCEEHHHHHHHHHHhCCCC-----EEEEEecC-CHHHHHHHHhcchhhhh
Confidence 35689999999999998 889999999 8999999999999886422 34555555 677787777542100
Q ss_pred -------------------CCceEEEEecCcceecCCCCcccCCCCCCCCcccccCCCcccchhccccchHHHHHHcCCc
Q 012172 154 -------------------NVEIHTFNQSQYPRLCADDFVPLPCKGKTDKDGWYPPGHGDVFPSLMNSGKLDALISQGKE 214 (469)
Q Consensus 154 -------------------~~~i~~f~Q~~~P~l~~~~~~~~~~~~~~~~~~~~P~GhGd~~~~L~~sg~L~~l~~~G~~ 214 (469)
+..+.+..|. .|.|+|+...... +.+ +-+
T Consensus 75 ~l~~~~~~~~~~~~~~~~~~~~i~~~~~~------------------------~~~Gt~~al~~a~-----~~l---~~~ 122 (281)
T 3juk_A 75 QIQGTNKENALKSIRNIIEKCCFSYVRQK------------------------QMKGLGHAILTGE-----ALI---GNE 122 (281)
T ss_dssp ----CCHHHHHHHHHHHHHHCEEEEEECS------------------------SCCCHHHHHHHTH-----HHH---CSS
T ss_pred hhhcccchhhhhhhhccccCccEEEEecC------------------------CCCCcHHHHHHHH-----HHc---CCC
Confidence 0122222222 2678888754322 222 237
Q ss_pred EEEEEeCccccccc----c-HHHHHHHHHcCCcceEEEee-eccCCCcceEEEEe---CC--ee-EEEEeccCChhhhhh
Q 012172 215 YVFAANSDNLGAIV----D-LKILNHLIQNKNEYCMEVTP-KTLADVKGGTLISY---EG--KV-QLLEIAQVPDEHVNE 282 (469)
Q Consensus 215 ~v~v~n~DNL~~~~----d-p~~Lg~~~~~~~~~~~~v~~-k~~~~~~~G~iv~~---~g--~~-~ivEy~~~~~e~~~~ 282 (469)
+++|.++|++.... + -.++.++.+.++ ..+.+.. ...++..+|++... +| ++ .++|..+.. .
T Consensus 123 ~~lv~~~D~~~~~~~~~~~l~~l~~~~~~~~~-~~v~~~~~~~~~~~~~g~v~~~~~~~g~~~v~~~~Ekp~~~--~--- 196 (281)
T 3juk_A 123 PFAVILADDLCISHDHPSVLKQMTSLYQKYQC-SIVAIEEVALEEVSKYGVIRGEWLEEGVYEIKDMVEKPNQE--D--- 196 (281)
T ss_dssp CEEEECTTEEEECTTSCCHHHHHHHHHHHHCS-CEEEEEECCTTTGGGSEEEEEEEEETTEEEEEEEEESCCTT--T---
T ss_pred CEEEEeCCeeccCccchHHHHHHHHHHHHcCC-CEEEEEEechhhcccCCEEEeccCCCCceEEeEEEECcCCC--C---
Confidence 89999999965543 1 245566666565 4444432 22456788988765 67 55 366644321 1
Q ss_pred ccccccccEEEEEeEEEeHHHHHHHHHhcccccccccCCCcCCCcceehhHHHhhhHhhhcccceeEeecCccccccCCc
Q 012172 283 FKSIEKFKIFNTNNLWVNLKAIKRLVEADALKMEIIPNPKEVDGIKVLQLETAAGAAIRFFDHAIGCNVHRSRFLPVKAT 362 (469)
Q Consensus 283 ~~~~~~~~~~Nt~~~~~~l~~L~~~l~~~~~~lp~~~n~K~~~g~~~iqle~~~~d~~~~~~~~~~v~v~r~eF~pVKn~ 362 (469)
......|+|+|+|+.+.+ +.+.+ . .++ ..++ +.|..++..++.. .++.++..+ ..+..|.+.
T Consensus 197 ----~~~~~~~~GiYi~~~~~l-~~l~~-------~-~~~-~~~e--~~l~d~i~~l~~~-~~v~~~~~~-g~~~dIgt~ 258 (281)
T 3juk_A 197 ----APSNLAVIGRYILTPDIF-EILSE-------T-KPG-KNNE--IQITDALRTQAKR-KRIIAYQFK-GKRYDCGSV 258 (281)
T ss_dssp ----CSCSEEEEEEEEECTTHH-HHHHT-------C-CCC-GGGS--CCHHHHHHHHHHH-SCCEEEECC-SEEEETTSH
T ss_pred ----CCcceeEEEEEEECHHHH-HHHHh-------c-CCC-CCCc--eeHHHHHHHHHhc-CCEEEEEeC-CeEEcCCCH
Confidence 234578999999999776 44443 1 111 1133 3344444444443 255555554 478999999
Q ss_pred hhHHHHHHHHHH
Q 012172 363 SDLLLVQSDLYT 374 (469)
Q Consensus 363 ~dL~~~~~~~~~ 374 (469)
.|+..++..+..
T Consensus 259 ~d~~~a~~~l~~ 270 (281)
T 3juk_A 259 EGYIEASNAYYK 270 (281)
T ss_dssp HHHHHHHHHHHH
T ss_pred HHHHHHHHHHHh
Confidence 999999887764
|
| >3k8d_A 3-deoxy-manno-octulosonate cytidylyltransferase; KDSB synthetase KDO complex, lipopolysaccharide biosynthesis magnesium, nucleotidyltransferase; HET: KDO CTP; 1.90A {Escherichia coli} SCOP: c.68.1.13 PDB: 3k8e_C 1vh1_A 3jtj_A* | Back alignment and structure |
|---|
Probab=99.37 E-value=1.4e-11 Score=120.71 Aligned_cols=234 Identities=13% Similarity=0.131 Sum_probs=139.8
Q ss_pred cceeEEEEcCCCCCcCCCCCCccccccCCCCchHHHHHHHHHHhhhhcCCcccEEEecCCCChHHHHHHHHHhcCCCCce
Q 012172 78 DKLVVLKLNGGLGTTMGCTGPKSVIEVRNGLTFLDLIVIQIENLNAKYGCNVPLLLMNSFNTHDDTSKIIEKYSKSNVEI 157 (469)
Q Consensus 78 ~k~avviLAGG~GTRmg~~~PK~l~~v~~gks~L~~~~~~i~~l~~~~~~~iplviMtS~~t~e~t~~~~~~~~g~~~~i 157 (469)
+++.+||||||.||||+ +|.|+++ .||||++|.++++...+- -.+++.| .++.+.++++++. ..+
T Consensus 17 M~~~aIIlA~G~stRlp---~K~L~~i-~GkPmi~~~l~~l~~~~i-----~~IvV~t---~~~~i~~~~~~~g---~~v 81 (264)
T 3k8d_A 17 MSFVVIIPARYASTRLP---GKPLVDI-NGKPMIVHVLERARESGA-----ERIIVAT---DHEDVARAVEAAG---GEV 81 (264)
T ss_dssp -CCEEEEECCSCCSSST---TGGGCEE-TTEEHHHHHHHHHHHTTC-----SEEEEEE---SCHHHHHHHHHTT---CEE
T ss_pred CceEEEEEcCCCCCCCC---CcceeeE-CCeEHHHHHHHHHHhCCC-----CEEEEEC---CHHHHHHHHHHcC---CEE
Confidence 46899999999999995 5999999 999999999999987641 1345544 2577888877531 122
Q ss_pred EEEEecCcceecCCCCcccCCCCCCCCcccccCCCcccchhccccchHHHHHHcCCcEEEEEeCcc-ccccccH-HHHHH
Q 012172 158 HTFNQSQYPRLCADDFVPLPCKGKTDKDGWYPPGHGDVFPSLMNSGKLDALISQGKEYVFAANSDN-LGAIVDL-KILNH 235 (469)
Q Consensus 158 ~~f~Q~~~P~l~~~~~~~~~~~~~~~~~~~~P~GhGd~~~~L~~sg~L~~l~~~G~~~v~v~n~DN-L~~~~dp-~~Lg~ 235 (469)
.+..|. .|.|+|.+..++ ..+...+.+++++.++|+ |....+. .++..
T Consensus 82 ~~~~~~------------------------~~~Gt~~i~~~~------~~l~~~~~d~vlv~~gD~Pli~~~~i~~li~~ 131 (264)
T 3k8d_A 82 CMTRAD------------------------HQSGTERLAEVV------EKCAFSDDTVIVNVQGDEPMIPATIIRQVADN 131 (264)
T ss_dssp EECCTT------------------------CCSHHHHHHHHH------HHHTCCTTCEEEEECTTCTTCCHHHHHHHHHH
T ss_pred EEecCC------------------------CCCCHHHHHHHH------HHhccCCCCEEEEEcCCcccCCHHHHHHHHHH
Confidence 211121 357777754432 222212568999999999 7765443 44555
Q ss_pred HHHcCCcceEEEeeecc-----CCCcceEEEEeCCeeEEEEeccCChhhhhhcc----ccccccEEEEEeEEEeHHHHHH
Q 012172 236 LIQNKNEYCMEVTPKTL-----ADVKGGTLISYEGKVQLLEIAQVPDEHVNEFK----SIEKFKIFNTNNLWVNLKAIKR 306 (469)
Q Consensus 236 ~~~~~~~~~~~v~~k~~-----~~~~~G~iv~~~g~~~ivEy~~~~~e~~~~~~----~~~~~~~~Nt~~~~~~l~~L~~ 306 (469)
+.+.++++++-+++-.+ ++.-+++++..+|+..-.+.+-.|. ..+.+. ......+.|+|.|+++.++|++
T Consensus 132 ~~~~~~~~~~~~~~v~d~~~~~~p~~vkVv~d~~g~~l~fsr~~ip~-~r~~~~~~~~~~~~~~~~~~GiY~y~~~~l~~ 210 (264)
T 3k8d_A 132 LAQRQVGMATLAVPIHNAEEAFNPNAVKVVLDAEGYALYFSRATIPW-DRDRFAEGLETVGDNFLRHLGIYGYRAGFIRR 210 (264)
T ss_dssp HHTSSCSEEEEEEECCSHHHHTCTTSCEEEECTTSBEEEEESSCCSC-CHHHHHHCSSCCCSCCEEECSEEEEEHHHHHH
T ss_pred HhhcCCCEEEEEEEcCCHHHccCCCceEEEECCCCeEEEEecCCCCC-CCccccccccccCCcceEEEEEEEECHHHHHH
Confidence 55556676665554332 2334456655677653222232321 111110 0012246799999999999998
Q ss_pred HHHhcccccccccCCCcCCCcc--eehhHHHhhhHhhhcccceeEeecCccccccCCchhHHHHHHHH
Q 012172 307 LVEADALKMEIIPNPKEVDGIK--VLQLETAAGAAIRFFDHAIGCNVHRSRFLPVKATSDLLLVQSDL 372 (469)
Q Consensus 307 ~l~~~~~~lp~~~n~K~~~g~~--~iqle~~~~d~~~~~~~~~~v~v~r~eF~pVKn~~dL~~~~~~~ 372 (469)
.... .+++. .=+||..- ++....++.++.+...++.+|.++.||..|++.+
T Consensus 211 ~~~~-------------~~~~lE~~e~leqlr--~le~G~~I~~~~~~~~~~~~IdtpeDl~~a~~~l 263 (264)
T 3k8d_A 211 YVNW-------------QPSPLEHIEMLEQLR--VLWYGEKIHVAVAQEVPGTGVDTPEDLERVRAEM 263 (264)
T ss_dssp HHHS-------------CCCHHHHHHTCTTHH--HHHTTCCEEEEECSCCCSCCCCSHHHHHHHHHHC
T ss_pred HHhC-------------CCChhhhHHHHHHHH--HHHCCCceEEEEeCCCCCCCCCCHHHHHHHHHHh
Confidence 8642 01211 00112111 2233334445555556889999999999998754
|
| >1fxo_A Glucose-1-phosphate thymidylyltransferase; rhamnose, nucleotidyltransferase, pyrophosphorylase, allostery; HET: TMP; 1.66A {Pseudomonas aeruginosa} SCOP: c.68.1.6 PDB: 1fzw_A 1g0r_A* 1g1l_A* 1g23_A* 1g2v_A* 1g3l_A* 1h5r_A* 1h5s_C* 1h5t_A* 1h5s_D* 1h5s_A* 1h5r_B* 1h5s_B* 1h5t_B* 1iim_A* 1iin_A* 3pkp_A* 3pkq_A* 1mp5_A* 1mp3_A* ... | Back alignment and structure |
|---|
Probab=99.35 E-value=5.5e-11 Score=117.96 Aligned_cols=234 Identities=16% Similarity=0.131 Sum_probs=140.7
Q ss_pred ceeEEEEcCCCCCcCC---CCCCccccccCCCCchHHHHHHHHHHhhhhcCCcccEEEecCCCChHHHHHHHHHhcCCCC
Q 012172 79 KLVVLKLNGGLGTTMG---CTGPKSVIEVRNGLTFLDLIVIQIENLNAKYGCNVPLLLMNSFNTHDDTSKIIEKYSKSNV 155 (469)
Q Consensus 79 k~avviLAGG~GTRmg---~~~PK~l~~v~~gks~L~~~~~~i~~l~~~~~~~iplviMtS~~t~e~t~~~~~~~~g~~~ 155 (469)
++.+||||||.||||+ ...||.|+|+ .||||+++.++.+...+- + .++|.|+....+.+++++......+.
T Consensus 2 ~~~aIILAgG~gtRl~plT~~~pK~llpi-~gkpli~~~l~~l~~~gi----~-~I~vv~~~~~~~~i~~~l~~g~~~g~ 75 (293)
T 1fxo_A 2 KRKGIILAGGSGTRLHPATLAISKQLLPV-YDKPMIYYPLSTLMLAGI----R-EILIISTPQDTPRFQQLLGDGSNWGL 75 (293)
T ss_dssp CEEEEEECCCCCTTTTTHHHHSCGGGSEE-TTEETTHHHHHHHHHTTC----C-EEEEEECTTTHHHHHHHHTTSGGGTC
T ss_pred CceEEEECCCCCCcCccccCCCCceeCeE-CCEeHHHHHHHHHHHCCC----C-EEEEEeccccHHHHHHHHhcccccCc
Confidence 4678999999999999 4679999999 999999999999976531 1 34444445456777777754110112
Q ss_pred ceEEEEecCcceecCCCCcccCCCCCCCCcccccCCCcccchhccccchHHHHHHcCCcEEEEEeCcc-cccccc-HHHH
Q 012172 156 EIHTFNQSQYPRLCADDFVPLPCKGKTDKDGWYPPGHGDVFPSLMNSGKLDALISQGKEYVFAANSDN-LGAIVD-LKIL 233 (469)
Q Consensus 156 ~i~~f~Q~~~P~l~~~~~~~~~~~~~~~~~~~~P~GhGd~~~~L~~sg~L~~l~~~G~~~v~v~n~DN-L~~~~d-p~~L 233 (469)
++.+..|. .|.|.++.+.... + ++ +-+.+++.++|| +.. .+ ..++
T Consensus 76 ~i~~~~~~------------------------~~~G~~~al~~a~-----~-~i--~~~~~~lv~gD~~~~~-~~l~~~l 122 (293)
T 1fxo_A 76 DLQYAVQP------------------------SPDGLAQAFLIGE-----S-FI--GNDLSALVLGDNLYYG-HDFHELL 122 (293)
T ss_dssp EEEEEECS------------------------SCCCGGGHHHHTH-----H-HH--TTSEEEEEETTEEEEC-TTHHHHH
T ss_pred eEEEeeCC------------------------CCCCHHHHHHHHH-----H-Hh--CCCCEEEEECChhccC-ccHHHHH
Confidence 34433333 2578887654322 2 22 225667777999 544 34 2455
Q ss_pred HHHHHcCCcceEEEeeeccCCCcceEEEEe-CCee-EEEEeccCChhhhhhccccccccEEEEEeEEEeHHHHHHHHHhc
Q 012172 234 NHLIQNKNEYCMEVTPKTLADVKGGTLISY-EGKV-QLLEIAQVPDEHVNEFKSIEKFKIFNTNNLWVNLKAIKRLVEAD 311 (469)
Q Consensus 234 g~~~~~~~~~~~~v~~k~~~~~~~G~iv~~-~g~~-~ivEy~~~~~e~~~~~~~~~~~~~~Nt~~~~~~l~~L~~~l~~~ 311 (469)
..+.+.+.+..+-+. +..++.++|++..+ +|++ .+.|..+. ..-.+.|+|.++|+.+.+..+-.
T Consensus 123 ~~~~~~~~~~~v~~~-~v~dp~~~g~v~~d~~g~v~~~~ekp~~-----------~~s~~~~~Giy~~~~~~l~~~~~-- 188 (293)
T 1fxo_A 123 GSASQRQTGASVFAY-HVLDPERYGVVEFDQGGKAISLEEKPLE-----------PKSNYAVTGLYFYDQQVVDIARD-- 188 (293)
T ss_dssp HHHHTCCSSEEEEEE-ECSCGGGSEEEEECTTSCEEEEEESCSS-----------CSSSEEEEEEEEECTTHHHHHHH--
T ss_pred HHHHhcCCCcEEEEE-ECCCcccCcEEEECCCCcEEEEEECCCC-----------CCCCeEEEEEEEEcHHHHHHHHh--
Confidence 555545555555444 34456789988654 5776 35553111 12247899999999988755432
Q ss_pred ccccccccCCCcCCCcceehhHHHhhhHhhhcccceeEeecCc-cccccCCchhHHHHHHHHHHhh
Q 012172 312 ALKMEIIPNPKEVDGIKVLQLETAAGAAIRFFDHAIGCNVHRS-RFLPVKATSDLLLVQSDLYTLA 376 (469)
Q Consensus 312 ~~~lp~~~n~K~~~g~~~iqle~~~~d~~~~~~~~~~v~v~r~-eF~pVKn~~dL~~~~~~~~~l~ 376 (469)
+.. . ..++ +.+...+...++. ....+..+++. .+.-|.+.+||..++..+..++
T Consensus 189 ------~~~-~-~~ge--~~~td~~~~~l~~-g~~~v~~~~~g~~w~Digt~edl~~a~~~~~~~~ 243 (293)
T 1fxo_A 189 ------LKP-S-PRGE--LEITDVNRAYLER-GQLSVEIMGRGYAWLDTGTHDSLLEAGQFIATLE 243 (293)
T ss_dssp ------CCC-C-TTSS--CCHHHHHHHHHHT-TCEEEEECCTTSEEEECCSHHHHHHHHHHHHHHH
T ss_pred ------cCc-c-cCCc--eeHHHHHHHHHhc-CCeEEEEeCCCCEEEcCCCHHHHHHHHHHHHHHH
Confidence 110 0 0132 2222222222222 12334445665 6899999999999988776544
|
| >1mc3_A Glucose-1-phosphate thymidylyltransferase; glucose-1-phosphate thymidylytransferase, RFFH; HET: TTP; 2.60A {Escherichia coli} SCOP: c.68.1.6 | Back alignment and structure |
|---|
Probab=99.35 E-value=1.4e-11 Score=122.40 Aligned_cols=243 Identities=13% Similarity=0.095 Sum_probs=142.9
Q ss_pred eeEEEEcCCCCCcCC---CCCCccccccCCCCchHHHHHHHHHHhhhhcCCcccEEEecCCCChHHHHHHHHHhcCCCCc
Q 012172 80 LVVLKLNGGLGTTMG---CTGPKSVIEVRNGLTFLDLIVIQIENLNAKYGCNVPLLLMNSFNTHDDTSKIIEKYSKSNVE 156 (469)
Q Consensus 80 ~avviLAGG~GTRmg---~~~PK~l~~v~~gks~L~~~~~~i~~l~~~~~~~iplviMtS~~t~e~t~~~~~~~~g~~~~ 156 (469)
+.+||||||.||||+ ...||.|+|+ .|+||+++.++.+...+- + .++|.|+....+.+++++......+.+
T Consensus 4 m~aIILAgG~GtRl~plT~~~pK~llpi-~gkpli~~~l~~l~~~gi----~-~I~vv~~~~~~~~i~~~l~~g~~~g~~ 77 (296)
T 1mc3_A 4 MKGIILAGGSGTRLHPITRGVSKQLLPI-YDKPMIYYPLSVLMLAGI----R-EILIITTPEDKGYFQRLLGDGSEFGIQ 77 (296)
T ss_dssp CEEEEECCCCCGGGHHHHTTSCGGGSEE-TTEETTHHHHHHHHHTTC----C-EEEEEECTTTHHHHHHHHTTSGGGTCE
T ss_pred cEEEEECCCCCCcCCcccCCCCceeeEE-CCeeHHHHHHHHHHhCCC----C-cEEEEechhHHHHHHHHHhcccccCce
Confidence 568999999999999 6789999999 899999999999976431 1 344445544567777777541101123
Q ss_pred eEEEEecCcceecCCCCcccCCCCCCCCcccccCCCcccchhccccchHHHHHHcCCcEEEEEeCcc-ccccccHHHHHH
Q 012172 157 IHTFNQSQYPRLCADDFVPLPCKGKTDKDGWYPPGHGDVFPSLMNSGKLDALISQGKEYVFAANSDN-LGAIVDLKILNH 235 (469)
Q Consensus 157 i~~f~Q~~~P~l~~~~~~~~~~~~~~~~~~~~P~GhGd~~~~L~~sg~L~~l~~~G~~~v~v~n~DN-L~~~~dp~~Lg~ 235 (469)
+.+..|. .|.|+++.+.... + ++. -+.+++.++|| +....-..++..
T Consensus 78 i~~~~~~------------------------~~~G~~~al~~a~-----~-~i~--~~~~~lv~gD~~~~~~~l~~~l~~ 125 (296)
T 1mc3_A 78 LEYAEQP------------------------SPDGLAQAFIIGE-----T-FLN--GEPSCLVLGDNIFFGQGFSPKLRH 125 (296)
T ss_dssp EEEEECS------------------------SCCCSTHHHHHTH-----H-HHT--TSCEEEEETTEEEECSSCHHHHHH
T ss_pred EEEeccC------------------------CCCCHHHHHHHHH-----H-HhC--CCCEEEEECCccccccCHHHHHHH
Confidence 4433333 2577877653321 2 222 24455555999 544222345555
Q ss_pred HHHcCCcceEEEeeeccCCCcceEEEEe-CCeeE-EEEeccCChhhhhhccccccccEEEEEeEEEeHHHHHHHHHhccc
Q 012172 236 LIQNKNEYCMEVTPKTLADVKGGTLISY-EGKVQ-LLEIAQVPDEHVNEFKSIEKFKIFNTNNLWVNLKAIKRLVEADAL 313 (469)
Q Consensus 236 ~~~~~~~~~~~v~~k~~~~~~~G~iv~~-~g~~~-ivEy~~~~~e~~~~~~~~~~~~~~Nt~~~~~~l~~L~~~l~~~~~ 313 (469)
+.+.+.+..+-+. +..+++++|++..+ +|++. +.| + |.. ....+.|+|.++++.+.+..+ .+
T Consensus 126 ~~~~~~~~~v~~~-~v~dp~~yg~v~~d~~g~v~~~~e-k--p~~--------~~s~~~~~Giy~~~~~~l~~~-~~--- 189 (296)
T 1mc3_A 126 VAARTEGATVFGY-QVMDPERFGVVEFDDNFRAISLEE-K--PKQ--------PKSNWAVTGLYFYDSKVVEYA-KQ--- 189 (296)
T ss_dssp HTTCCSSEEEEEE-ECSCCSSSBBCEEETTEEEEECCB-S--CSS--------CSCSEEEEEEEECCTHHHHHH-HS---
T ss_pred HHHcCCCCEEEEE-ECCCcccCCEEEECCCCcEEEEEE-C--CCC--------CCCCEEEEEEEEEcHHHHHHH-Hh---
Confidence 5444555544333 34556789987654 56553 333 2 211 123478999999999887543 22
Q ss_pred ccccccCCCcCCCcceehhHHHhhhHhhhcccceeEeecCc-cccccCCchhHHHHHHHHHHhhc--CceeecCC
Q 012172 314 KMEIIPNPKEVDGIKVLQLETAAGAAIRFFDHAIGCNVHRS-RFLPVKATSDLLLVQSDLYTLAD--GFVTRNEA 385 (469)
Q Consensus 314 ~lp~~~n~K~~~g~~~iqle~~~~d~~~~~~~~~~v~v~r~-eF~pVKn~~dL~~~~~~~~~l~~--g~l~~~~~ 385 (469)
+.. . ..++. .+...+...++. ....+..+++. .+.-|.+.+||..++..+..+++ |..+..|+
T Consensus 190 ----~~~-~-~~ge~--~~td~~~~~l~~-g~~~v~~~~~g~~w~Digt~edl~~a~~~~~~~~~~~g~~~~~~~ 255 (296)
T 1mc3_A 190 ----VKP-S-ERGEL--EITSINQMYLEA-GNLTVELLGRGFAWLDTGTHDSLIEASTFVQTVEKRQGFKIACLE 255 (296)
T ss_dssp ----CCC-C-SSSSC--CHHHHHHHHHHT-TCEEEEECCTTCEEEECCSHHHHHHHHHHHHHHHHHHSCCSSCHH
T ss_pred ----cCc-c-ccCCc--cHHHHHHHHHhc-CCeEEEEeCCCCEEEeCCCHHHHHHHHHHHHHHHHhCCceEeehH
Confidence 111 0 11332 223333322322 12344456666 69999999999999888775442 55555554
|
| >1tzf_A Glucose-1-phosphate cytidylyltransferase; nucleotidyltransferase, mixed alpha/beta fold; HET: C5G; 2.10A {Salmonella enterica subsp} SCOP: c.68.1.13 PDB: 1wvc_A* | Back alignment and structure |
|---|
Probab=99.34 E-value=9.4e-12 Score=120.00 Aligned_cols=237 Identities=14% Similarity=0.139 Sum_probs=136.2
Q ss_pred ceeEEEEcCCCCCcCCC---CCCccccccCCCCchHHHHHHHHHHhhhhcCCcccEEEecCCCChHHHHHHHHHhcCCCC
Q 012172 79 KLVVLKLNGGLGTTMGC---TGPKSVIEVRNGLTFLDLIVIQIENLNAKYGCNVPLLLMNSFNTHDDTSKIIEKYSKSNV 155 (469)
Q Consensus 79 k~avviLAGG~GTRmg~---~~PK~l~~v~~gks~L~~~~~~i~~l~~~~~~~iplviMtS~~t~e~t~~~~~~~~g~~~ 155 (469)
++.+||||||.||||+. +.||.|+|+ .|+|+++++++++.+.+- -.++|.|++ .++.+++++.++.....
T Consensus 2 ~~~avIlAaG~gtRl~~lt~~~pK~l~~i-~gkpli~~~l~~l~~~g~-----~~i~vv~~~-~~~~i~~~~~~~~~~~~ 74 (259)
T 1tzf_A 2 ASKAVILAGGLGTRLSEETIVKPKPMVEI-GGKPILWHIMKMYSVHGI-----KDFIICCGY-KGYVIKEYFANYFLHMS 74 (259)
T ss_dssp CCEEEEEECSCC--------CCCGGGCEE-TTEEHHHHHHHHHHHTTC-----CEEEEEECT-THHHHHHHHHTHHHHHS
T ss_pred CcEEEEECCCCcccCCCccCCCCccccEE-CCEEHHHHHHHHHHHCCC-----CEEEEEccc-CHHHHHHHHhhcccccc
Confidence 35689999999999997 679999999 999999999999987641 245666666 56888888875321001
Q ss_pred ceEEEEecCcceecCCCCcccCCCC-CCCCc----ccccCCCcccchhccccchHHHHHHcCCcEEEEEeCcccccccc-
Q 012172 156 EIHTFNQSQYPRLCADDFVPLPCKG-KTDKD----GWYPPGHGDVFPSLMNSGKLDALISQGKEYVFAANSDNLGAIVD- 229 (469)
Q Consensus 156 ~i~~f~Q~~~P~l~~~~~~~~~~~~-~~~~~----~~~P~GhGd~~~~L~~sg~L~~l~~~G~~~v~v~n~DNL~~~~d- 229 (469)
++.+..|+. .+ -+..+. .++.+ ...+.|+|+.+..... .+ . +.+++++.++|++.. .+
T Consensus 75 ~~~~~~~~~--~~------~~~~~~~~~~~v~~~~~~~~~gt~~al~~a~~-----~~-~-~~~~~lv~~~D~~~~-~~~ 138 (259)
T 1tzf_A 75 DVTFHMAEN--RM------EVHHKRVEPWNVTLVDTGDSSMTGGRLKRVAE-----YV-K-DDEAFLFTYGDGVAD-LDI 138 (259)
T ss_dssp CEEEEGGGT--EE------EETTCCCCCCEEEEEECCSSCCHHHHHHHTGG-----GT-T-TSSCEEEEETTEEEC-CCH
T ss_pred ccccccccc--ce------eeeeccccccceeeeecccccCcHHHHHHHHH-----hc-C-CCCcEEEEECCEecc-cCH
Confidence 244433321 00 000000 00100 1236788887544332 11 1 237899999999644 34
Q ss_pred HHHHHHHHHcCCcceEEEeeeccCCCcceEEEEeCCee-EEEEeccCChhhhhhccccccccEEEEEeEEEeHHHHHHHH
Q 012172 230 LKILNHLIQNKNEYCMEVTPKTLADVKGGTLISYEGKV-QLLEIAQVPDEHVNEFKSIEKFKIFNTNNLWVNLKAIKRLV 308 (469)
Q Consensus 230 p~~Lg~~~~~~~~~~~~v~~k~~~~~~~G~iv~~~g~~-~ivEy~~~~~e~~~~~~~~~~~~~~Nt~~~~~~l~~L~~~l 308 (469)
-.++.++.+.++++.+..+ .++..+|++...+|++ .++|.. .+ .....|+|+|+|+.+.+. .
T Consensus 139 ~~~~~~~~~~~~~~t~~~~---~~~~~~g~v~~~~g~v~~~~ekp-~~-----------~~~~~~~Giy~~~~~~l~-~- 201 (259)
T 1tzf_A 139 KATIDFHKAHGKKATLTAT---FPPGRFGALDIQAGQVRSFQEKP-KG-----------DGAMINGGFFVLNPSVID-L- 201 (259)
T ss_dssp HHHHHHHHHHCCSEEEEEE---CCCCCSEEEEEETTEEEEEEESC-SC-----------CSCCEECCCEEECGGGGG-G-
T ss_pred HHHHHHHHHhCCeEEEEEe---cCCCCccEEEEcCCEEEEEEecC-CC-----------CCceEEEEEEEeCHHHHH-h-
Confidence 2556666666666544222 3456789777667876 366621 11 124689999999998762 1
Q ss_pred HhcccccccccCCCcCCCcceehhH-HHhhhHhhhcccceeEeecCccccccCCchhHHHHHHHHH
Q 012172 309 EADALKMEIIPNPKEVDGIKVLQLE-TAAGAAIRFFDHAIGCNVHRSRFLPVKATSDLLLVQSDLY 373 (469)
Q Consensus 309 ~~~~~~lp~~~n~K~~~g~~~iqle-~~~~d~~~~~~~~~~v~v~r~eF~pVKn~~dL~~~~~~~~ 373 (469)
+.+.+ . .++ ..+..+++. .++.++.++ ..+.-|.+.+|+..++..+.
T Consensus 202 ---------l~~~~---~----~~~~~~i~~~~~~-~~v~~~~~~-~~~~dI~t~~d~~~a~~~~~ 249 (259)
T 1tzf_A 202 ---------IDNDA---T----TWEQEPLMTLAQQ-GELMAFEHP-GFWQPMDTLRDKVYLEGLWE 249 (259)
T ss_dssp ---------CCSTT---C----CTTTHHHHHHHHT-TCEEEEEEC-SCEEECCSHHHHHHHHHHHH
T ss_pred ---------hcccc---c----ccHHHHHHHHHHc-CCEEEEEeC-cEEEeCCCHHHHHHHHHHHh
Confidence 11111 0 111 112222222 244555554 37889999999999887764
|
| >3tqd_A 3-deoxy-manno-octulosonate cytidylyltransferase; cell envelope; 1.80A {Coxiella burnetii} SCOP: c.68.1.0 | Back alignment and structure |
|---|
Probab=99.33 E-value=4.2e-11 Score=116.74 Aligned_cols=232 Identities=12% Similarity=0.078 Sum_probs=135.4
Q ss_pred cceeEEEEcCCCCCcCCCCCCccccccCCCCchHHHHHHHHHHhhhhcCCcccEEEecCCCChHHHHHHHHHhcCCCCce
Q 012172 78 DKLVVLKLNGGLGTTMGCTGPKSVIEVRNGLTFLDLIVIQIENLNAKYGCNVPLLLMNSFNTHDDTSKIIEKYSKSNVEI 157 (469)
Q Consensus 78 ~k~avviLAGG~GTRmg~~~PK~l~~v~~gks~L~~~~~~i~~l~~~~~~~iplviMtS~~t~e~t~~~~~~~~g~~~~i 157 (469)
.++.+||||||.||||+ ||.|+++ .||||++|.++++.+.+-. .+++-|. ++.+.++++++ | .++
T Consensus 8 M~~~aIIlA~G~stRl~---~K~L~~i-~GkPli~~~l~~l~~~~i~-----~VvVvt~---~~~i~~~~~~~-g--~~v 72 (256)
T 3tqd_A 8 MEFRVIIPARFDSTRLP---GKALVDI-AGKPMIQHVYESAIKSGAE-----EVVIATD---DKRIRQVAEDF-G--AVV 72 (256)
T ss_dssp -CCEEEEECCCC---CT---TGGGCEE-TTEEHHHHHHHHHHHTTCS-----EEEEEES---CHHHHHHHHHT-T--CEE
T ss_pred CCceEEEEcCCCCCCCC---CCCeeeE-CCchHHHHHHHHHHhCCCC-----EEEEECC---HHHHHHHHHHc-C--CeE
Confidence 47899999999999997 9999999 9999999999999875311 3344442 57788888753 1 122
Q ss_pred EEEEecCcceecCCCCcccCCCCCCCCcccccCCCcccchhccccchHHHHHHcCCcEEEEEeCcc-ccccccH-HHHHH
Q 012172 158 HTFNQSQYPRLCADDFVPLPCKGKTDKDGWYPPGHGDVFPSLMNSGKLDALISQGKEYVFAANSDN-LGAIVDL-KILNH 235 (469)
Q Consensus 158 ~~f~Q~~~P~l~~~~~~~~~~~~~~~~~~~~P~GhGd~~~~L~~sg~L~~l~~~G~~~v~v~n~DN-L~~~~dp-~~Lg~ 235 (469)
.+..| ..|.|++.++.++ +.+...+.++++++++|+ |....+. .++..
T Consensus 73 ~~~~~------------------------~~~~Gt~~i~~a~------~~l~~~~~d~vlv~~gD~Pli~~~~i~~li~~ 122 (256)
T 3tqd_A 73 CMTSS------------------------DHQSGTERIAEAA------VALGFEDDEIIVCLQGDEPLIPPDAIRKLAED 122 (256)
T ss_dssp EECCT------------------------TCCSHHHHHHHHH------HHTTCCTTCEEEEECTTCCCCCHHHHHHHHHH
T ss_pred EEeCC------------------------CCCCcHHHHHHHH------HHhCcCCCCEEEEEeCCcccCCHHHHHHHHHH
Confidence 21111 1256777654433 222112468999999999 7755443 34455
Q ss_pred HHHc-CCcceEEEeeec-----cCCCcceEEEEeCCeeEEEEeccCChhhhhhcc-----ccccccEEEEEeEEEeHHHH
Q 012172 236 LIQN-KNEYCMEVTPKT-----LADVKGGTLISYEGKVQLLEIAQVPDEHVNEFK-----SIEKFKIFNTNNLWVNLKAI 304 (469)
Q Consensus 236 ~~~~-~~~~~~~v~~k~-----~~~~~~G~iv~~~g~~~ivEy~~~~~e~~~~~~-----~~~~~~~~Nt~~~~~~l~~L 304 (469)
+.+. +++++.-+++-. .++..+++++..+|+..-.+.+-+|... +.+. ......+.|+|+|.++.++|
T Consensus 123 ~~~~~~~~~a~l~~~v~~~~~~~~p~~vkvv~d~~g~~l~fsr~pip~~r-~~~~~~~~~~~~~~~~~~~GiY~y~~~~l 201 (256)
T 3tqd_A 123 LDEHDNVKVASLCTPITEVDELFNPHSTKVVLNRRNYALYFSHAPIPWGR-DTFSDKENLQLNGSHYRHVGIYAYRVGFL 201 (256)
T ss_dssp HHHCC--CEEEEEEECCCHHHHTCTTSCEEEECTTSBEEEEESSCSSCCT-TTTTCGGGCCCSSCCEEEEEEEEEEHHHH
T ss_pred HHhCCCCCEEEEeeEcCCHHHhhCCCccEEEECCCCEEeEEecCCCCCCC-cccccccccccCCcceEEEEEEEcCHHHH
Confidence 5443 445544444321 3455567777677876433333333110 0000 00112366999999999999
Q ss_pred HHHHHhcccccccccCCCcCCCcc--eehhHHHhhhHhhhcccceeEeecCccccccCCchhHHHHHH
Q 012172 305 KRLVEADALKMEIIPNPKEVDGIK--VLQLETAAGAAIRFFDHAIGCNVHRSRFLPVKATSDLLLVQS 370 (469)
Q Consensus 305 ~~~l~~~~~~lp~~~n~K~~~g~~--~iqle~~~~d~~~~~~~~~~v~v~r~eF~pVKn~~dL~~~~~ 370 (469)
+++.... +++. .=+||+. .++..-.++.++.++...+.+|.+.+||..+++
T Consensus 202 ~~~~~l~-------------~s~lE~~e~leql--r~le~G~~i~~~~~~~~~~~~idtpeDl~~a~~ 254 (256)
T 3tqd_A 202 EEYLSWD-------------ACPAEKMEALEQL--RILWHGGRIHMVVAKSKCPPGVDTEEDLERVRA 254 (256)
T ss_dssp HHHHHSC-------------CCHHHHHHTCTTH--HHHHTTCCCEEEECSSCCCCCCSSHHHHHHHHT
T ss_pred HHHHhCC-------------CCcccchhhhHHH--HHHHCCCeEEEEEeCCCCCCCcCCHHHHHHHHH
Confidence 9876421 1110 0011211 123344456666776667899999999998864
|
| >1lvw_A Glucose-1-phosphate thymidylyltransferase; protein nucleotide complex, nucleotide binding fold; HET: TYD; 1.70A {Methanothermobacter thermautotrophicusorganism_taxid} SCOP: c.68.1.6 | Back alignment and structure |
|---|
Probab=99.33 E-value=9.9e-11 Score=116.30 Aligned_cols=242 Identities=16% Similarity=0.109 Sum_probs=143.0
Q ss_pred eeEEEEcCCCCCcCC---CCCCccccccCCCCchHHHHHHHHHHhhhhcCCcccEEEecCCCChHHHHHHHHHhcCCCCc
Q 012172 80 LVVLKLNGGLGTTMG---CTGPKSVIEVRNGLTFLDLIVIQIENLNAKYGCNVPLLLMNSFNTHDDTSKIIEKYSKSNVE 156 (469)
Q Consensus 80 ~avviLAGG~GTRmg---~~~PK~l~~v~~gks~L~~~~~~i~~l~~~~~~~iplviMtS~~t~e~t~~~~~~~~g~~~~ 156 (469)
+.+||||||.||||+ ...||.|+|+ .||||+++.++.+...+- + .++|.|+....+.+++++......+.+
T Consensus 4 m~aIILAgG~GtRl~plT~~~pK~llpi-~gkpli~~~l~~l~~~gi----~-~Iivv~~~~~~~~i~~~l~~g~~~g~~ 77 (295)
T 1lvw_A 4 MKGIVLAGGSGTRLYPITRAVSKQLLPI-YDKPMIYYPLSVLMLAGI----R-DILIISTPRDLPLYRDLLGDGSQFGVR 77 (295)
T ss_dssp CEEEEECCCCCSTTTTTTTSSCGGGSEE-TTEETTHHHHHHHHHTTC----C-EEEEEECTTTHHHHHHHHTTSGGGTSE
T ss_pred eEEEEECCCCCCccccccCCCCceecEE-CCeeHHHHHHHHHHHCCC----C-eEEEEeccchHHHHHHHhhhccccCce
Confidence 568999999999999 5779999999 899999999999986531 1 344445544567777777541101123
Q ss_pred eEEEEecCcceecCCCCcccCCCCCCCCcccccCCCcccchhccccchHHHHHHcCCcEEEEEeCcc-cccccc-HHHHH
Q 012172 157 IHTFNQSQYPRLCADDFVPLPCKGKTDKDGWYPPGHGDVFPSLMNSGKLDALISQGKEYVFAANSDN-LGAIVD-LKILN 234 (469)
Q Consensus 157 i~~f~Q~~~P~l~~~~~~~~~~~~~~~~~~~~P~GhGd~~~~L~~sg~L~~l~~~G~~~v~v~n~DN-L~~~~d-p~~Lg 234 (469)
+.+..|. .|.|.++.+.... + ++. -+.+++.++|| +.. .+ ..++.
T Consensus 78 i~~~~~~------------------------~~~G~~~al~~a~-----~-~i~--~~~~~lv~gD~~~~~-~~l~~~l~ 124 (295)
T 1lvw_A 78 FSYRVQE------------------------EPRGIADAFIVGK-----D-FIG--DSKVALVLGDNVFYG-HRFSEILR 124 (295)
T ss_dssp EEEEECS------------------------SCCCGGGHHHHTH-----H-HHT--TSCEEEEETTCCEEC-TTHHHHHH
T ss_pred EEEeeCC------------------------CCCChHHHHHHHH-----H-HhC--CCcEEEEECCccccC-cCHHHHHH
Confidence 4433333 2567887654322 2 222 24455555999 544 34 24555
Q ss_pred HHHHcCCcceEEEeeeccCCCcceEEEEe-CCeeE-EEEeccCChhhhhhccccccccEEEEEeEEEeHHHHHHHHHhcc
Q 012172 235 HLIQNKNEYCMEVTPKTLADVKGGTLISY-EGKVQ-LLEIAQVPDEHVNEFKSIEKFKIFNTNNLWVNLKAIKRLVEADA 312 (469)
Q Consensus 235 ~~~~~~~~~~~~v~~k~~~~~~~G~iv~~-~g~~~-ivEy~~~~~e~~~~~~~~~~~~~~Nt~~~~~~l~~L~~~l~~~~ 312 (469)
.+.+.+.+..+-+.+ ..+++++|++..+ +|++. +.|..+.+ .-.+.|+|.++|+.+.+..+-.
T Consensus 125 ~~~~~~~~~~v~~~~-v~dp~~~g~v~~d~~g~v~~~~ekp~~~-----------~s~~~~~Giy~f~~~~l~~~~~--- 189 (295)
T 1lvw_A 125 RAASLEDGAVIFGYY-VRDPRPFGVVEFDSEGRVISIEEKPSRP-----------KSNYVVPGLYFYDNQVVEIARR--- 189 (295)
T ss_dssp HHHTCCSSEEEEEEE-CSCCTTSEEEEECTTSBEEEEEESCSSC-----------SCSEECCSEEEECTTHHHHHHH---
T ss_pred HHHHcCCCcEEEEEE-CCCcccCCEEEECCCCcEEEEEECCCCC-----------CCCEEEEEeEEEcHHHHHHHHh---
Confidence 555445555443333 3456689987654 57763 55532111 1247899999999988755432
Q ss_pred cccccccCCCcCCCcceehhHHHhhhHhhhcccceeEeecCc-cccccCCchhHHHHHHHHHHhhc--CceeecCC
Q 012172 313 LKMEIIPNPKEVDGIKVLQLETAAGAAIRFFDHAIGCNVHRS-RFLPVKATSDLLLVQSDLYTLAD--GFVTRNEA 385 (469)
Q Consensus 313 ~~lp~~~n~K~~~g~~~iqle~~~~d~~~~~~~~~~v~v~r~-eF~pVKn~~dL~~~~~~~~~l~~--g~l~~~~~ 385 (469)
+.. . ..++. .+...+...+.. .+..+..+++. .+.-|.+.+||..++..+..++. |.....|+
T Consensus 190 -----~~~-~-~~ge~--~~td~~~~~l~~-g~~~v~~~~~g~~w~Digt~edl~~a~~~~~~~~~~~g~~~~~~~ 255 (295)
T 1lvw_A 190 -----IEP-S-DRGEL--EITSVNEEYLRM-GKLRVELMGRGMAWLDTGTHDGLLEASSFIETIQKRQGFYIACLE 255 (295)
T ss_dssp -----CCC-C-TTSCC--CHHHHHHHHHHT-TCEEEEEECTTCEECCCSSHHHHHHHHHHHHHHHHHHCCCSSCHH
T ss_pred -----cCC-c-ccCce--eHHHHHHHHHHc-CCcEEEEeCCCCeEEeCCCHHHHHHHHHHHHHHHHhCCceecchh
Confidence 111 0 11322 222222222222 12344556776 69999999999999888775542 54444443
|
| >4fcu_A 3-deoxy-manno-octulosonate cytidylyltransferase; structural genomics, niaid, national institute of allergy AN infectious diseases; 1.90A {Acinetobacter baumannii} PDB: 3pol_A | Back alignment and structure |
|---|
Probab=99.32 E-value=1.9e-11 Score=118.93 Aligned_cols=232 Identities=10% Similarity=0.025 Sum_probs=133.6
Q ss_pred eeEEEEcCCCCCcCCCCCCccccccCCCCchHHHHH-HHHHHhhhhcCCcccEEEecCCCChHHHHHHHHHhcCCCCceE
Q 012172 80 LVVLKLNGGLGTTMGCTGPKSVIEVRNGLTFLDLIV-IQIENLNAKYGCNVPLLLMNSFNTHDDTSKIIEKYSKSNVEIH 158 (469)
Q Consensus 80 ~avviLAGG~GTRmg~~~PK~l~~v~~gks~L~~~~-~~i~~l~~~~~~~iplviMtS~~t~e~t~~~~~~~~g~~~~i~ 158 (469)
..+||||||.||||+ +|.|+++ .||||++|++ +++++.+ . -.+++-|. ++.+.++++++ | .++.
T Consensus 2 ~~aiIlA~G~stR~~---~K~L~~i-~GkPli~~~i~~~~~~~~----~-~~vvVvt~---~~~i~~~~~~~-g--~~v~ 66 (253)
T 4fcu_A 2 KHIVIPARFSSSRLP---GKPLLLI-HDRPMILRVVDQAKKVEG----F-DDLCVATD---DERIAEICRAE-G--VDVV 66 (253)
T ss_dssp EEEEEECCSCCTTST---TGGGSEE-TTEEHHHHHHHHHHTCTT----C-CEEEEEES---CHHHHHHHHTT-T--CCEE
T ss_pred eEEEEEeCCCCCCCC---CCceeeE-CCeEhHHHHHHHHHHhcC----C-CEEEEECC---HHHHHHHHHHc-C--CeEE
Confidence 468999999999998 5999999 9999999999 9886542 1 13445443 47787777653 1 1222
Q ss_pred EEEecCcceecCCCCcccCCCCCCCCcccccCCCcccchhccccchHHHHHHcCCcEEEEEeCcc-ccccccH-HHHHHH
Q 012172 159 TFNQSQYPRLCADDFVPLPCKGKTDKDGWYPPGHGDVFPSLMNSGKLDALISQGKEYVFAANSDN-LGAIVDL-KILNHL 236 (469)
Q Consensus 159 ~f~Q~~~P~l~~~~~~~~~~~~~~~~~~~~P~GhGd~~~~L~~sg~L~~l~~~G~~~v~v~n~DN-L~~~~dp-~~Lg~~ 236 (469)
+..|. .+.|++-+..+ +..+...+.++++++++|+ |....+. .++..+
T Consensus 67 ~~~~~------------------------~~~Gt~~i~~a------~~~~~~~~~d~vlv~~gD~Pli~~~~i~~li~~~ 116 (253)
T 4fcu_A 67 LTSAD------------------------HPSGTDRLSEV------ARIKGWDADDIIVNVQGDEPLLPAQLVQQVAKLL 116 (253)
T ss_dssp ECCTT------------------------CCCHHHHHHHH------HHHHTCCTTCEEEECCTTCTTCCHHHHHHHHHHH
T ss_pred EeCCC------------------------CCChHHHHHHH------HHhcCcCCCCEEEEEeCCcccCCHHHHHHHHHHH
Confidence 11111 13454333222 2233222458999999999 8765443 344555
Q ss_pred HHc-CCcceEEEee-----eccCCCcceEEEEeCCeeEEEEeccCChhhhhhccc---c-ccccEEEEEeEEEeHHHHHH
Q 012172 237 IQN-KNEYCMEVTP-----KTLADVKGGTLISYEGKVQLLEIAQVPDEHVNEFKS---I-EKFKIFNTNNLWVNLKAIKR 306 (469)
Q Consensus 237 ~~~-~~~~~~~v~~-----k~~~~~~~G~iv~~~g~~~ivEy~~~~~e~~~~~~~---~-~~~~~~Nt~~~~~~l~~L~~ 306 (469)
.+. +..++..+++ ...++..+++++..+|+..-...+-+|... +.+.. . ....+.|+|+|+|+.++|++
T Consensus 117 ~~~~~~~~at~~~~~~~~~~~~~p~~~kvv~d~~g~~l~fsr~~ip~~r-~~~~~~~~~~~~~~~~~~GiY~f~~~~l~~ 195 (253)
T 4fcu_A 117 VDKPNCSMSTLCEPIHALDEFQRDSIVKVVMSKQNEALYFSRATIPYDR-DGAKRDEPTLHTQAFRHLGLYAYRVSLLQE 195 (253)
T ss_dssp HHCTTCSEEEEEEECCCHHHHHCTTSCEEEECTTSBEEEEESSCCSCCT-TTSSSSSCCCCSCCEEEEEEEEEEHHHHHH
T ss_pred HhCCCCCEEEEeEEcCCHHHccCCCccEEEECCCCeEEEecCCCCCCCC-CcccccccccccceeEEEEEEEeCHHHHHH
Confidence 444 2344433343 124555567766667876322222233211 11100 0 11235699999999999998
Q ss_pred HHHhcccccccccCCCcCCCcce--ehhHHHhhhHhhhcccceeEeecCccccccCCchhHHHHHHHH
Q 012172 307 LVEADALKMEIIPNPKEVDGIKV--LQLETAAGAAIRFFDHAIGCNVHRSRFLPVKATSDLLLVQSDL 372 (469)
Q Consensus 307 ~l~~~~~~lp~~~n~K~~~g~~~--iqle~~~~d~~~~~~~~~~v~v~r~eF~pVKn~~dL~~~~~~~ 372 (469)
.... .+++.. =.||..- ++....++.++.++..++.+|+++.||..+++.+
T Consensus 196 ~~~~-------------~~~~le~~e~le~lr--~l~~G~~I~~~~~~~~~~~~IdtpeDL~~a~~~l 248 (253)
T 4fcu_A 196 YVTW-------------EMGKLEKLESLEQLR--VLENGHRIAIAVAEANLPPGVDTQADLDRLNNMP 248 (253)
T ss_dssp HTTS-------------CCCHHHHHHTCTTHH--HHHTTCCEEEEECSSCCCCCCCSHHHHHHHHTSC
T ss_pred HHhC-------------CCCcccchhHHHHHH--HHHCCCceEEEEeCCCCCCCCCCHHHHHHHHHHH
Confidence 7521 113210 0112111 1333345666677655689999999999998654
|
| >1h7e_A 3-deoxy-manno-octulosonate cytidylyltransferase; nucleotidyltransferase, CMP-KDO synthetase, nucleoside monophosphate glycosides; 1.83A {Escherichia coli} SCOP: c.68.1.13 PDB: 1gqc_A* 1gq9_A 1h6j_A 1h7f_A* 1h7g_A* 1h7h_A* 1h7t_A* | Back alignment and structure |
|---|
Probab=99.31 E-value=2.2e-10 Score=109.54 Aligned_cols=229 Identities=6% Similarity=0.018 Sum_probs=133.2
Q ss_pred ceeEEEEcCCCCCcCCCCCCccccccCCCCchHHHHHHHHHHhhhhcCCcccEEEecCCCChHHHHHHHHHhcCCCCceE
Q 012172 79 KLVVLKLNGGLGTTMGCTGPKSVIEVRNGLTFLDLIVIQIENLNAKYGCNVPLLLMNSFNTHDDTSKIIEKYSKSNVEIH 158 (469)
Q Consensus 79 k~avviLAGG~GTRmg~~~PK~l~~v~~gks~L~~~~~~i~~l~~~~~~~iplviMtS~~t~e~t~~~~~~~~g~~~~i~ 158 (469)
++.+||||||.||||+ ||.|+++ .|+||++|+++++..... --.+++.|++ +.+.++++++ .+.
T Consensus 2 ~~~aiIlA~G~~~R~~---~K~l~~i-~g~pli~~~i~~~~~~~~----~~~ivvv~~~---~~i~~~~~~~-----~~~ 65 (245)
T 1h7e_A 2 KAVIVIPARYGSSRLP---GKPLLDI-VGKPMIQHVYERALQVAG----VAEVWVATDD---PRVEQAVQAF-----GGK 65 (245)
T ss_dssp CEEEEEECCSCCSSST---TGGGCEE-TTEEHHHHHHHHHHTCTT----CCEEEEEESC---HHHHHHHHHT-----TCE
T ss_pred CeEEEEEcCCcCCCCC---CCccccc-CCchHHHHHHHHHHhCCC----CCeEEEECCc---HHHHHHHHHc-----CCe
Confidence 5788999999999997 9999999 999999999999987642 0145555543 6777777653 133
Q ss_pred EEEecCcceecCCCCcccCCCCCCCCcccccCCCcccchhccccchHHHHHHcCCcEEEEEeCcc-ccccccH-HHHHHH
Q 012172 159 TFNQSQYPRLCADDFVPLPCKGKTDKDGWYPPGHGDVFPSLMNSGKLDALISQGKEYVFAANSDN-LGAIVDL-KILNHL 236 (469)
Q Consensus 159 ~f~Q~~~P~l~~~~~~~~~~~~~~~~~~~~P~GhGd~~~~L~~sg~L~~l~~~G~~~v~v~n~DN-L~~~~dp-~~Lg~~ 236 (469)
++.-. ...+.|+++++.++ ...+.++++++++|+ +....+. .++..+
T Consensus 66 ~~~~~----------------------~~~~~g~~~~~~~~---------~~~~~~~~lv~~~D~P~~~~~~i~~l~~~~ 114 (245)
T 1h7e_A 66 AIMTR----------------------NDHESGTDRLVEVM---------HKVEADIYINLQGDEPMIRPRDVETLLQGM 114 (245)
T ss_dssp EEECC----------------------SCCSSHHHHHHHHH---------HHSCCSEEEECCTTCTTCCHHHHHHHHHHH
T ss_pred EEeCC----------------------CccCCcHHHHHHHH---------HhCCCCEEEEEcCCcCcCCHHHHHHHHHHH
Confidence 22200 01134555554332 222457999999999 7654442 445555
Q ss_pred HHc-CCcceEEEeeec----cCCCcceEEEEeCCeeEEEEeccCChhhhhhccccccccEEEEEeEEEeHHHHHHHHHhc
Q 012172 237 IQN-KNEYCMEVTPKT----LADVKGGTLISYEGKVQLLEIAQVPDEHVNEFKSIEKFKIFNTNNLWVNLKAIKRLVEAD 311 (469)
Q Consensus 237 ~~~-~~~~~~~v~~k~----~~~~~~G~iv~~~g~~~ivEy~~~~~e~~~~~~~~~~~~~~Nt~~~~~~l~~L~~~l~~~ 311 (469)
... ++++++.+++.. ..+...+++...+|++..+..+..+... +. ...-.+.|+|.|+|+.+.|.+.+ +
T Consensus 115 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~r-~~---~~~~~~~~~g~y~~~~~~l~~~~-~- 188 (245)
T 1h7e_A 115 RDDPALPVATLCHAISAAEAAEPSTVKVVVNTRQDALYFSRSPIPYPR-NA---EKARYLKHVGIYAYRRDVLQNYS-Q- 188 (245)
T ss_dssp HHCTTCCEEEEEEEECHHHHTCTTSCEEEECTTCBEEEEESSCSSCCT-TG---GGCCEEEEEEEEEEEHHHHHHGG-G-
T ss_pred HhCCCCCEEEEeecCCHHHhcCCCCcEEEECCCCcEEEeecCCCCCCc-cc---ccCceeEEEEEEEcCHHHHHHHH-h-
Confidence 555 566665554431 0122233333456665432222222110 00 00113569999999999887765 2
Q ss_pred ccccccccCCCcCCCcceehhHHHhhhH--hhhcccceeEeecCccccccCCchhHHHHHHHHHH
Q 012172 312 ALKMEIIPNPKEVDGIKVLQLETAAGAA--IRFFDHAIGCNVHRSRFLPVKATSDLLLVQSDLYT 374 (469)
Q Consensus 312 ~~~lp~~~n~K~~~g~~~iqle~~~~d~--~~~~~~~~~v~v~r~eF~pVKn~~dL~~~~~~~~~ 374 (469)
++ .++. .+...+... +..-.++.++.++ ..+..|.+..|+..++..+..
T Consensus 189 ---~~--------~~~~--~~td~~~~~~~~~~g~~v~~~~~~-~~~~dIdtp~Dl~~a~~~l~~ 239 (245)
T 1h7e_A 189 ---LP--------ESMP--EQAESLEQLRLMNAGINIRTFEVA-ATGPGVDTPACLEKVRALMAQ 239 (245)
T ss_dssp ---SC--------CCHH--HHHHTCTTHHHHHTTCCEEEEECC-CCCCCSSSHHHHHHHHHHHHH
T ss_pred ---CC--------CCcc--ccchhhHHHHHHHCCCeEEEEEeC-CCCCCCCCHHHHHHHHHHHHH
Confidence 00 1221 111111111 1222456666767 688999999999999877653
|
| >1jyk_A LICC protein, CTP:phosphocholine cytidylytransferase; 3D structure, CTP:phosphocholine cytidylyltransferase; 1.50A {Streptococcus pneumoniae} SCOP: c.68.1.13 PDB: 1jyl_A* | Back alignment and structure |
|---|
Probab=99.30 E-value=4.6e-11 Score=115.88 Aligned_cols=219 Identities=11% Similarity=0.121 Sum_probs=126.6
Q ss_pred ceeEEEEcCCCCCcCC---CCCCccccccCCCCchHHHHHHHHHHhhhhcCCcccEEEecCCCChHHHHHHHHHhcCCCC
Q 012172 79 KLVVLKLNGGLGTTMG---CTGPKSVIEVRNGLTFLDLIVIQIENLNAKYGCNVPLLLMNSFNTHDDTSKIIEKYSKSNV 155 (469)
Q Consensus 79 k~avviLAGG~GTRmg---~~~PK~l~~v~~gks~L~~~~~~i~~l~~~~~~~iplviMtS~~t~e~t~~~~~~~~g~~~ 155 (469)
++.+||||||.||||+ .+.||.|+++ .|+||++++++++...+-. .++|.|++ ..+.+.++.+++
T Consensus 25 ~~~aiIlAaG~gtRl~plt~~~pK~l~~i-~gkpli~~~l~~l~~~g~~-----~i~vv~~~-~~~~i~~~~~~~----- 92 (254)
T 1jyk_A 25 RVKAIILAAGLGTRLRPLTENTPKALVQV-NQKPLIEYQIEFLKEKGIN-----DIIIIVGY-LKEQFDYLKEKY----- 92 (254)
T ss_dssp CCEEEEEECSCCGGGTTTTSSSCGGGCEE-TTEEHHHHHHHHHHHTTCC-----CEEEEECT-TGGGGTHHHHHH-----
T ss_pred CceEEEECCCCcccCCcccCCCCCEEeeE-CCEEHHHHHHHHHHHCCCC-----eEEEEeCC-cHHHHHHHHHhC-----
Confidence 6789999999999999 5789999999 9999999999999876421 34555555 456665555432
Q ss_pred ceEEEEecCcceecCCCCcccCCCCCCCCcccccCCCcccchhccccchHHHHHHcCCcEEEEEeCcc-ccccccHHHHH
Q 012172 156 EIHTFNQSQYPRLCADDFVPLPCKGKTDKDGWYPPGHGDVFPSLMNSGKLDALISQGKEYVFAANSDN-LGAIVDLKILN 234 (469)
Q Consensus 156 ~i~~f~Q~~~P~l~~~~~~~~~~~~~~~~~~~~P~GhGd~~~~L~~sg~L~~l~~~G~~~v~v~n~DN-L~~~~dp~~Lg 234 (469)
.+.++.+.. +.+.|+++.+..... .+ +.++|+++|+ +.. +. +.
T Consensus 93 ~~~iv~~~~----------------------~~~~g~~~al~~a~~-----~~-----~~~lv~~~D~~~~~--~~--~~ 136 (254)
T 1jyk_A 93 GVRLVFNDK----------------------YADYNNFYSLYLVKE-----EL-----ANSYVIDADNYLFK--NM--FR 136 (254)
T ss_dssp CCEEEECTT----------------------TTTSCTHHHHHTTGG-----GC-----TTEEEEETTEEESS--CC--CC
T ss_pred CcEEEECCC----------------------ccCCCcHHHHHHHHH-----HC-----CCEEEEeCCcccCH--HH--HH
Confidence 134333321 124566554322211 11 2478999999 443 31 11
Q ss_pred HHHHcCCcceEEEeeeccCCCcceEEEEeCCee-EEEEeccCChhhhhhccccccccEEEEEeEEEeHHHH---HHHHHh
Q 012172 235 HLIQNKNEYCMEVTPKTLADVKGGTLISYEGKV-QLLEIAQVPDEHVNEFKSIEKFKIFNTNNLWVNLKAI---KRLVEA 310 (469)
Q Consensus 235 ~~~~~~~~~~~~v~~k~~~~~~~G~iv~~~g~~-~ivEy~~~~~e~~~~~~~~~~~~~~Nt~~~~~~l~~L---~~~l~~ 310 (469)
.+.+. ...+. +...++...+|+++..+|++ .+.| + + ...+.|+|+++|+.+.+ .+++++
T Consensus 137 ~~~~~--~~~~t-~~~~~~~~~~~v~~d~~g~v~~~~e-~--~-----------~~~~~~~Giy~~~~~~~~~l~~~l~~ 199 (254)
T 1jyk_A 137 NDLTR--STYFS-VYREDCTNEWFLVYGDDYKVQDIIV-D--S-----------KAGRILSGVSFWDAPTAEKIVSFIDK 199 (254)
T ss_dssp SCCCS--EEEEE-CEESSCSSCCEEEECTTCBEEEEEC-C--C-----------SSEEBCCSEEEECHHHHHHHHHHHHH
T ss_pred HHHhC--CceEE-EEcccCCCCeEEEECCCCeEEEEEE-C--C-----------CCCcEEEEEEEEcHHHHHHHHHHHHH
Confidence 11221 11122 22233333577665456766 3565 1 1 13478999999987654 344433
Q ss_pred cccccccccCCCcCCCcceehhHHHhhhHhhhcccceeEeecCccccccCCchhHHHHHHHHH
Q 012172 311 DALKMEIIPNPKEVDGIKVLQLETAAGAAIRFFDHAIGCNVHRSRFLPVKATSDLLLVQSDLY 373 (469)
Q Consensus 311 ~~~~lp~~~n~K~~~g~~~iqle~~~~d~~~~~~~~~~v~v~r~eF~pVKn~~dL~~~~~~~~ 373 (469)
..+.+.. ++. .++..+.....- .++.++.++...+..|++..||..++..+.
T Consensus 200 -------~~~~~~~-~e~--~~~d~~~~l~~~-~~v~~~~~~~~~~~~Idt~edl~~a~~~l~ 251 (254)
T 1jyk_A 200 -------AYVSGEF-VDL--YWDNMVKDNIKE-LDVYVEELEGNSIYEIDSVQDYRKLEEILK 251 (254)
T ss_dssp -------HHTTTCC-TTC--CTTHHHHTTGGG-CCEEEEECCTTSEEECCSHHHHHHHHHHHC
T ss_pred -------HHhcCCc-ccc--CHHHHHHHHHhh-CCeEEEEecCCeEEEcCCHHHHHHHHHHhh
Confidence 2222211 221 122222222211 345566676678999999999999987764
|
| >2e3d_A UTP--glucose-1-phosphate uridylyltransferase; UDP-glucose, carbohydrate, pyrophosphorylase; 1.95A {Escherichia coli} | Back alignment and structure |
|---|
Probab=99.30 E-value=1.1e-10 Score=115.63 Aligned_cols=231 Identities=13% Similarity=0.102 Sum_probs=138.9
Q ss_pred ceeEEEEcCCCCCcCCC---CCCccccccCCCCchHHHHHHHHHHhhhhcCCcccEEEecCCCChHHHHHHHHHhc----
Q 012172 79 KLVVLKLNGGLGTTMGC---TGPKSVIEVRNGLTFLDLIVIQIENLNAKYGCNVPLLLMNSFNTHDDTSKIIEKYS---- 151 (469)
Q Consensus 79 k~avviLAGG~GTRmg~---~~PK~l~~v~~gks~L~~~~~~i~~l~~~~~~~iplviMtS~~t~e~t~~~~~~~~---- 151 (469)
.+.+||||||.||||+. +.||.|+|+ .|+|+++++++++...+-+ .++|.|++ ..+.+.+++....
T Consensus 8 ~~~avIlAaG~gtRl~plt~~~pK~ll~i-~gkpli~~~l~~l~~~gi~-----~i~vv~~~-~~~~i~~~~~~~~~l~~ 80 (302)
T 2e3d_A 8 VKKAVIPVAGLGTRMLPATKAIPKEMLPL-VDKPLIQYVVNECIAAGIT-----EIVLVTHS-SKNSIENHFDTSFELEA 80 (302)
T ss_dssp CCEEEEECCSCCGGGTTTTSSSCGGGCEE-TTEEHHHHHHHHHHHTTCC-----EEEEEECG-GGHHHHHHHSCCHHHHH
T ss_pred ccEEEEECCcCcccCCccccCCCceeeEE-CCeEHHHHHHHHHHHCCCC-----EEEEEeCC-CHHHHHHHHhcchhhhh
Confidence 36789999999999986 679999999 9999999999999876411 34555555 4677877775310
Q ss_pred -----C-------------CCCceEEEEecCcceecCCCCcccCCCCCCCCcccccCCCcccchhccccchHHHHHHcCC
Q 012172 152 -----K-------------SNVEIHTFNQSQYPRLCADDFVPLPCKGKTDKDGWYPPGHGDVFPSLMNSGKLDALISQGK 213 (469)
Q Consensus 152 -----g-------------~~~~i~~f~Q~~~P~l~~~~~~~~~~~~~~~~~~~~P~GhGd~~~~L~~sg~L~~l~~~G~ 213 (469)
+ .+.++.+..|. .|.|+|+.+.... +. + +-
T Consensus 81 ~l~~~~~~~~l~~~~~~~~~~~~i~~~~~~------------------------~~~Gt~~al~~a~-----~~-~--~~ 128 (302)
T 2e3d_A 81 MLEKRVKRQLLDEVQSICPPHVTIMQVRQG------------------------LAKGLGHAVLCAH-----PV-V--GD 128 (302)
T ss_dssp HHC----CHHHHHHHHTSCTTCEEEEEECS------------------------SCCCHHHHHHHTH-----HH-H--CS
T ss_pred hhhhccchhhhhhhhhccccCcceEEeeCC------------------------ccCCHHHHHHHHH-----HH-c--CC
Confidence 0 01122222221 2578888654322 22 2 23
Q ss_pred cEEEEEeCccccc----cc---cH-HHHHHHHHcCCcceEEEeeeccCCCcceEEEE-----eCC---ee-EEEEeccCC
Q 012172 214 EYVFAANSDNLGA----IV---DL-KILNHLIQNKNEYCMEVTPKTLADVKGGTLIS-----YEG---KV-QLLEIAQVP 276 (469)
Q Consensus 214 ~~v~v~n~DNL~~----~~---dp-~~Lg~~~~~~~~~~~~v~~k~~~~~~~G~iv~-----~~g---~~-~ivEy~~~~ 276 (469)
++++|+++|++.. .. +. .++..+.+.++ .++.+. ...++..+|++.. .+| ++ .++|....
T Consensus 129 ~~~lv~~~D~~~~~~~~~~~~~~l~~l~~~~~~~~~-~~i~~~-~~~~~~~yg~v~~~~~~~~~g~~~~v~~~~ekp~~- 205 (302)
T 2e3d_A 129 EPVAVILPDVILDEYESDLSQDNLAEMIRRFDETGH-SQIMVE-PVADVTAYGVVDCKGVELAPGESVPMVGVVEKPKA- 205 (302)
T ss_dssp SCEEEECTTEEECTTSSCTTTSTHHHHHHHHHHHCC-EEEEEE-ECSCGGGSEEEECTTCCCCTTCEEEECEEEESCCT-
T ss_pred CcEEEEcCCccccCccccchHHHHHHHHHHHHhcCC-cEEEEE-EccCCCCccEEEecccccCCCCceeEEEEEECCCC-
Confidence 6899999999544 22 32 45555555555 333333 3466678998864 456 54 35664211
Q ss_pred hhhhhhccccccccEEEEEeEEEeHHHHHHHHHhcccccccccCCCcCCCcceehhHHHhhhHhhhcccceeEeecCccc
Q 012172 277 DEHVNEFKSIEKFKIFNTNNLWVNLKAIKRLVEADALKMEIIPNPKEVDGIKVLQLETAAGAAIRFFDHAIGCNVHRSRF 356 (469)
Q Consensus 277 ~e~~~~~~~~~~~~~~Nt~~~~~~l~~L~~~l~~~~~~lp~~~n~K~~~g~~~iqle~~~~d~~~~~~~~~~v~v~r~eF 356 (469)
+. ......|+|+|+|+.+.+ +.+++ +... ..++ +.+...+..+++.- ++.++.++. .+
T Consensus 206 -~~-------~~~~~~~~Giyi~~~~~l-~~l~~-------~~~~--~~~~--~~l~d~i~~l~~~~-~v~~~~~~~-~~ 263 (302)
T 2e3d_A 206 -DV-------APSNLAIVGRYVLSADIW-PLLAK-------TPPG--AGDE--IQLTDAIDMLIEKE-TVEAYHMKG-KS 263 (302)
T ss_dssp -TT-------CSCSEEEEEEEEECTTHH-HHHTC-------CCC------C--CCHHHHHHHHHHHS-CEEEEECCS-CE
T ss_pred -Cc-------cccceEEEEEEEECHHHH-HHHHh-------hCCC--CCCc--eehHHHHHHHHHhC-CEEEEEeCC-eE
Confidence 11 122478999999998866 33332 1110 1122 33444444444432 455555553 78
Q ss_pred cccCCchhHHHHHHHHH
Q 012172 357 LPVKATSDLLLVQSDLY 373 (469)
Q Consensus 357 ~pVKn~~dL~~~~~~~~ 373 (469)
.-|.+..|+..++.++.
T Consensus 264 ~DIgt~~d~~~a~~~~~ 280 (302)
T 2e3d_A 264 HDCGNKLGYMQAFVEYG 280 (302)
T ss_dssp EECSSHHHHHHHHHHHH
T ss_pred EcCCCHHHHHHHHHHHH
Confidence 89999999988876553
|
| >1vic_A 3-deoxy-manno-octulosonate cytidylyltransferase; structural genomics; 1.80A {Haemophilus influenzae} SCOP: c.68.1.13 PDB: 1vh3_A 3duv_A* | Back alignment and structure |
|---|
Probab=99.27 E-value=3.2e-10 Score=110.03 Aligned_cols=238 Identities=12% Similarity=0.096 Sum_probs=137.3
Q ss_pred ceeEEEEcCCCCCcCCCCCCccccccCCCCchHHHHHHHHHHhhhhcCCcccEEEecCCCChHHHHHHHHHhcCCCCceE
Q 012172 79 KLVVLKLNGGLGTTMGCTGPKSVIEVRNGLTFLDLIVIQIENLNAKYGCNVPLLLMNSFNTHDDTSKIIEKYSKSNVEIH 158 (469)
Q Consensus 79 k~avviLAGG~GTRmg~~~PK~l~~v~~gks~L~~~~~~i~~l~~~~~~~iplviMtS~~t~e~t~~~~~~~~g~~~~i~ 158 (469)
++.+||||||.||||+ +|.|+++ .|+||+++.++++..... -.+++.|+ ++.+.++++++ .+.
T Consensus 2 ~~~aiIlA~G~g~R~~---~K~l~~~-~gkpli~~~l~~l~~~~~-----~~ivvv~~---~~~i~~~~~~~-----~~~ 64 (262)
T 1vic_A 2 SFTVIIPARFASSRLP---GKPLADI-KGKPMIQHVFEKALQSGA-----SRVIIATD---NENVADVAKSF-----GAE 64 (262)
T ss_dssp CCEEEEECCCCCSSST---TGGGCEE-TTEEHHHHHHHHHHHTTC-----SEEEEEES---CHHHHHHHHHT-----TCE
T ss_pred CcEEEEEcCCCCCCCC---CCccccC-CCeEHHHHHHHHHHhCCC-----ceEEEECC---cHHHHHHHHhc-----CCE
Confidence 5678999999999997 5999999 999999999999987642 23455443 35677777653 233
Q ss_pred EEEecCcceecCCCCcccCCCCCCCCcccccCCCcccchhccccchHHHHHHcCCcEEEEEeCcc-ccccccH-HHHHHH
Q 012172 159 TFNQSQYPRLCADDFVPLPCKGKTDKDGWYPPGHGDVFPSLMNSGKLDALISQGKEYVFAANSDN-LGAIVDL-KILNHL 236 (469)
Q Consensus 159 ~f~Q~~~P~l~~~~~~~~~~~~~~~~~~~~P~GhGd~~~~L~~sg~L~~l~~~G~~~v~v~n~DN-L~~~~dp-~~Lg~~ 236 (469)
++.+.. ..|.|+|.+.. .+..+...+.++++++++|+ +....+. .++..+
T Consensus 65 ~~~~~~----------------------~~~~g~~~~~~------~~~~l~~~~~~~vlv~~~D~P~i~~~~i~~l~~~~ 116 (262)
T 1vic_A 65 VCMTSV----------------------NHNSGTERLAE------VVEKLAIPDNEIIVNIQGDEPLIPPVIVRQVADNL 116 (262)
T ss_dssp EEECCC----------------------SSCCHHHHHHH------HHHHTTCCTTCEEEECCTTCTTCCHHHHHHHHHHH
T ss_pred EEECCc----------------------cccCChHHHHH------HHHHhccCCCCEEEEEeCCcCccCHHHHHHHHHHH
Confidence 333210 12345553221 12233222457999999999 7665443 445555
Q ss_pred HHcCCcceEEEeeeccC----CCcceEEE-EeCCeeEEEEeccCC--hhhh-----hhccccccccEEEEEeEEEeHHHH
Q 012172 237 IQNKNEYCMEVTPKTLA----DVKGGTLI-SYEGKVQLLEIAQVP--DEHV-----NEFKSIEKFKIFNTNNLWVNLKAI 304 (469)
Q Consensus 237 ~~~~~~~~~~v~~k~~~----~~~~G~iv-~~~g~~~ivEy~~~~--~e~~-----~~~~~~~~~~~~Nt~~~~~~l~~L 304 (469)
.+.++++++.+++..++ ...++.++ ..+|++.....+-.+ .+.. ............|+|.|+++.+.+
T Consensus 117 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~v~~f~~~~~~~~r~~~~~~~~~~~~~~p~~~~~~~giy~~~~~~l 196 (262)
T 1vic_A 117 AKFNVNMASLAVKIHDAEELFNPNAVKVLTDKDGYVLYFSRSVIPYDRDQFMNLQDVQKVQLSDAYLRHIGIYAYRAGFI 196 (262)
T ss_dssp HHHTCSEEEEEEECCCHHHHTCTTSCEEEECTTSBEEEEESSCSSCCHHHHTTCSCGGGCCCCTTCEEEEEEEEEEHHHH
T ss_pred HhcCCCEEEEEEecCCHHHhcCCCceEEEECCCCCEeeeecCCCCcCCccccccccccccccccceEEEEEEEEeeHHHH
Confidence 55666766655554332 12344444 345665422222222 1110 000011223467999999999988
Q ss_pred HHHHHhcccccccccCCCcCCCcceehhHHHhhhHhhhcccceeEeecCccccccCCchhHHHHHHHHHH
Q 012172 305 KRLVEADALKMEIIPNPKEVDGIKVLQLETAAGAAIRFFDHAIGCNVHRSRFLPVKATSDLLLVQSDLYT 374 (469)
Q Consensus 305 ~~~l~~~~~~lp~~~n~K~~~g~~~iqle~~~~d~~~~~~~~~~v~v~r~eF~pVKn~~dL~~~~~~~~~ 374 (469)
..+.... .+.. -+.+. +|.. .++..-.++.++.++..++..|.+..||..++..+..
T Consensus 197 ~~~~~~~-------~~~~-~~~e~---~~~~--~~l~~g~~v~~~~~~~~~~~dI~tpeDl~~a~~~l~~ 253 (262)
T 1vic_A 197 KQYVQWA-------PTQL-ENLEK---LEQL--RVLYNGERIHVELAKEVPAVGVDTAEDLEKVRAILAA 253 (262)
T ss_dssp HHHHHSC-------CCHH-HHHHT---CTTH--HHHHTTCCEEEEECSSCCCCCCCSHHHHHHHHHHHHH
T ss_pred HHHHhCC-------CCch-hhhhh---HHHH--HHHHCCCeEEEEEeCCCCCCCCCCHHHHHHHHHHHHh
Confidence 8764320 0000 00011 1110 1222234566677766689999999999999887753
|
| >2y6p_A 3-deoxy-manno-octulosonate cytidylyltransferase; lipid A; HET: CTP; 2.10A {Aquifex aeolicus} | Back alignment and structure |
|---|
Probab=99.25 E-value=2.5e-10 Score=108.28 Aligned_cols=224 Identities=12% Similarity=0.084 Sum_probs=128.9
Q ss_pred ceeEEEEcCCCCCcCCCCCCccccccCCCCchHHHHHHHHHHhhhhcCCcccEEEecCCCChHHHHHHHHHhcCCCCceE
Q 012172 79 KLVVLKLNGGLGTTMGCTGPKSVIEVRNGLTFLDLIVIQIENLNAKYGCNVPLLLMNSFNTHDDTSKIIEKYSKSNVEIH 158 (469)
Q Consensus 79 k~avviLAGG~GTRmg~~~PK~l~~v~~gks~L~~~~~~i~~l~~~~~~~iplviMtS~~t~e~t~~~~~~~~g~~~~i~ 158 (469)
++.+||||||.||||+ ||.++++ .|+|++++.++++... -. .+++.|++ +.+.++++++ +.
T Consensus 2 ~~~aiIlA~G~g~R~~---~K~l~~i-~g~pli~~~l~~~~~~-~~-----~i~v~~~~---~~i~~~~~~~------~~ 62 (234)
T 2y6p_A 2 RRAVIIPARLGSTRLK---EKPLKNL-LGKPLIRWVVEGLVKT-GE-----RVILATDS---ERVKEVVEDL------CE 62 (234)
T ss_dssp CEEEEEECCSCCTTTT---TGGGCEE-TTEEHHHHHHHHHHTT-TS-----CEEEEESC---HHHHHHHTTT------SE
T ss_pred ceEEEEEcCCCCCCCC---CCcceeE-CCEEHHHHHHHHHHHh-CC-----EEEEECCh---HHHHHHHHhc------eE
Confidence 5778999999999998 9999999 9999999999999776 21 34554443 6666666432 12
Q ss_pred EEEecCcceecCCCCcccCCCCCCCCcccccCCCcccchhccccchHHHHHHcCCcEEEEEeCcc-ccccccH-HHHHHH
Q 012172 159 TFNQSQYPRLCADDFVPLPCKGKTDKDGWYPPGHGDVFPSLMNSGKLDALISQGKEYVFAANSDN-LGAIVDL-KILNHL 236 (469)
Q Consensus 159 ~f~Q~~~P~l~~~~~~~~~~~~~~~~~~~~P~GhGd~~~~L~~sg~L~~l~~~G~~~v~v~n~DN-L~~~~dp-~~Lg~~ 236 (469)
++... ...+.|+|+++.++. ..+.++++++++|+ +....+. .++..+
T Consensus 63 ~~~~~----------------------~~~~~g~~~~~~~~~---------~~~~~~vlv~~~D~P~~~~~~i~~l~~~~ 111 (234)
T 2y6p_A 63 VFLTP----------------------SDLPSGSDRVLYVVR---------DLDVDLIINYQGDEPFVYEEDIKLIFREL 111 (234)
T ss_dssp EEECC----------------------TTCCSHHHHHHHHHT---------TCCCSEEEECCTTCCCCCHHHHHHHHHHH
T ss_pred EEECC----------------------cccccchHHHHHHHH---------hCCCCEEEEecCCcCcCCHHHHHHHHHHH
Confidence 22111 112456776653332 22457999999999 8764443 345555
Q ss_pred HHcCCcceEEEeee---ccCCCcceEEEEeCCeeE-EEEeccCChhhhhhccccccccEEEEEeEEEeHHHHHHHHHhcc
Q 012172 237 IQNKNEYCMEVTPK---TLADVKGGTLISYEGKVQ-LLEIAQVPDEHVNEFKSIEKFKIFNTNNLWVNLKAIKRLVEADA 312 (469)
Q Consensus 237 ~~~~~~~~~~v~~k---~~~~~~~G~iv~~~g~~~-ivEy~~~~~e~~~~~~~~~~~~~~Nt~~~~~~l~~L~~~l~~~~ 312 (469)
.+.+ +...-+... ...+..++++...+|++. +.|.. .+. ..+. .+ .. .+.|+|.|+|+.+.+.++.....
T Consensus 112 ~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~g~v~~~~e~~-~~~-~~~~-~~-~~-~~~~~giy~~~~~~l~~~~~~~~ 185 (234)
T 2y6p_A 112 EKGE-RVVTLARKDKEAYERPEDVKVVLDREGYALYFSRSP-IPY-FRKN-DT-FY-PLKHVGIYGFRKETLMEFGAMPP 185 (234)
T ss_dssp HHTC-SEEEEEEECSGGGGCTTSCEEEECTTSBEEEEESSC-CSC-CSSC-CS-SC-CEEEEEEEEEEHHHHHHHHHSCC
T ss_pred HhCC-CeEEEecCCHHHhcCCCceEEEEcCCCCEeeeecCC-CCc-cccc-cc-ce-eeEEEEEEEcCHHHHHHHHhCCC
Confidence 4545 332222221 123445565444567653 44421 110 0000 00 11 24699999999999987754200
Q ss_pred cccccccCCCcCCCcceehhHHHhhhHhhhcccceeEeecCccccccCCchhHHHHHHHH
Q 012172 313 LKMEIIPNPKEVDGIKVLQLETAAGAAIRFFDHAIGCNVHRSRFLPVKATSDLLLVQSDL 372 (469)
Q Consensus 313 ~~lp~~~n~K~~~g~~~iqle~~~~d~~~~~~~~~~v~v~r~eF~pVKn~~dL~~~~~~~ 372 (469)
..... .+. + +. + ..+..-.++.++.++ ..+.-|.+..|+..++..+
T Consensus 186 -------~~~~~-~d~-~--~~-~-~~~~~g~~v~~~~~~-~~~~dI~t~~dl~~a~~~~ 231 (234)
T 2y6p_A 186 -------SKLEQ-IEG-L--EQ-L-RLLENGIKIKVLITE-NYYHGVDTEEDLKIVEEKL 231 (234)
T ss_dssp -------CHHHH-HHT-C--TH-H-HHHHTTCCCEEEECC-SCCCCCCSHHHHHHHHHHC
T ss_pred -------Cccch-hhH-H--HH-H-HHHHCCCeEEEEEeC-CcccCCCCHHHHHHHHHHH
Confidence 00000 011 1 11 0 112222455666666 6789999999999987654
|
| >2qh5_A PMI, ALGA, mannose-6-phosphate isomerase; structural genomics, PSI, protein structure initi nysgrc; 2.30A {Helicobacter pylori} | Back alignment and structure |
|---|
Probab=99.24 E-value=7.8e-11 Score=117.45 Aligned_cols=190 Identities=14% Similarity=0.118 Sum_probs=108.2
Q ss_pred ceeEEEEcCCCCCcCC--C--CCCccccccCCCCchHHHHHHHHHHhhhhcCCcccEEEecCCCChHHHHHHHHHhcCCC
Q 012172 79 KLVVLKLNGGLGTTMG--C--TGPKSVIEVRNGLTFLDLIVIQIENLNAKYGCNVPLLLMNSFNTHDDTSKIIEKYSKSN 154 (469)
Q Consensus 79 k~avviLAGG~GTRmg--~--~~PK~l~~v~~gks~L~~~~~~i~~l~~~~~~~iplviMtS~~t~e~t~~~~~~~~g~~ 154 (469)
++.+||||||.||||+ + ..||.|+++.+|+||++++++++... -. .++|.|++...+.+.++++.+.+.
T Consensus 4 ~~~avIlAgG~gtRl~plt~~~~pK~ll~i~gg~pli~~~l~~l~~~-~~-----~i~vv~~~~~~~~i~~~~~~~~~~- 76 (308)
T 2qh5_A 4 KIKNILLSGGSGKRLWPLSRSLYPKQFLKLFDHKSLFELSFKRNASL-VD-----ETLIVCNEKHYFLALEEIKNEIKN- 76 (308)
T ss_dssp CEEEEEECC-------------CCGGGCTTBTTBCHHHHHHHHHHTT-CS-----EEEEEEEGGGHHHHHHHTTTTCSS-
T ss_pred ccEEEEEcCCCCccCCccCCCCCCCEEEECCCCCCHHHHHHHHHHcc-CC-----CEEEEEChhHHHHHHHHHHHhhCC-
Confidence 4678999999999996 3 57999999955999999999999876 22 445555653335666777542111
Q ss_pred CceEEEEecCcceecCCCCcccCCCCCCCCcccccCCCcccchhccccchHHHHHHcCCcEEEEEeCcccccccc-H-HH
Q 012172 155 VEIHTFNQSQYPRLCADDFVPLPCKGKTDKDGWYPPGHGDVFPSLMNSGKLDALISQGKEYVFAANSDNLGAIVD-L-KI 232 (469)
Q Consensus 155 ~~i~~f~Q~~~P~l~~~~~~~~~~~~~~~~~~~~P~GhGd~~~~L~~sg~L~~l~~~G~~~v~v~n~DNL~~~~d-p-~~ 232 (469)
.++.++.|. .|.|+|+....... .+ ..-++++|+++|++....+ . .+
T Consensus 77 ~~~~~i~~~------------------------~~~gt~~al~~a~~-----~l--~~~~~~lv~~~D~~~~~~~~~~~~ 125 (308)
T 2qh5_A 77 KSVGFLLES------------------------LSKNTANAIALSAL-----MS--DKEDLLIVTPSDHLIKDLQAYENA 125 (308)
T ss_dssp CEEEEEEES------------------------SCCCHHHHHHHHHH-----TS--CTTSEEEEEESSCBCCCHHHHHHH
T ss_pred CccEEEeCC------------------------CCCChHHHHHHHHH-----Hh--CCCCeEEEEcCCccccCHHHHHHH
Confidence 034444443 25678777433221 11 1234799999999542222 2 34
Q ss_pred HHH---HHHcCCcceEEEeeeccCCCcceEEEEe-CCee-EEEEeccCChhhhhhccccccccEEEEEeEEEeHHHHHHH
Q 012172 233 LNH---LIQNKNEYCMEVTPKTLADVKGGTLISY-EGKV-QLLEIAQVPDEHVNEFKSIEKFKIFNTNNLWVNLKAIKRL 307 (469)
Q Consensus 233 Lg~---~~~~~~~~~~~v~~k~~~~~~~G~iv~~-~g~~-~ivEy~~~~~e~~~~~~~~~~~~~~Nt~~~~~~l~~L~~~ 307 (469)
+.. +.+.++..++.+. ...++..+|++... +|++ .++|..+.+. ...+.. ..-.+.|+|+|+|+.+.+.+.
T Consensus 126 ~~~~~~~~~~~~~~t~~~~-~~~~~~~~g~i~~d~~~~V~~~~Ekp~~~~--~~~~~~-~g~~~~n~Giy~~~~~~ll~~ 201 (308)
T 2qh5_A 126 IKKAIDLAQKGFLVTFGVS-IDKPNTEFGYIESPNGLDVKRFIEKPSLDK--AIEFQK-SGGFYFNSGMFVFQAGVFLDE 201 (308)
T ss_dssp HHHHHHHHHTTCEEEEEEE-CSSCCTTSEEEECSSSSBCSEEEESCCHHH--HHHHHH-HCCEEEEEEEEEEEHHHHHHH
T ss_pred HHHHHHHHhcCCEEEEEEe-cCCCCCCceEEEECCCCEEEEEEECCChHH--HHHHhh-cCCeEEEeEEEEEEHHHHHHH
Confidence 444 3444554444443 44566789988754 5676 5777433211 111100 112468999999999887666
Q ss_pred HHh
Q 012172 308 VEA 310 (469)
Q Consensus 308 l~~ 310 (469)
+.+
T Consensus 202 l~~ 204 (308)
T 2qh5_A 202 LKK 204 (308)
T ss_dssp HHH
T ss_pred HHH
Confidence 654
|
| >3f1c_A Putative 2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase 2; structural genomics, PSI-2, protein structure initiative; 2.30A {Listeria monocytogenes str} SCOP: c.68.1.0 | Back alignment and structure |
|---|
Probab=99.23 E-value=8.7e-11 Score=113.23 Aligned_cols=227 Identities=13% Similarity=0.112 Sum_probs=119.9
Q ss_pred ceeEEEEcCCCCCcCCC-CCCccccccCCCCchHHHHHHHHHHhhhhcCCcccEEEecCCCChHHHHHHHHHhcCCCCce
Q 012172 79 KLVVLKLNGGLGTTMGC-TGPKSVIEVRNGLTFLDLIVIQIENLNAKYGCNVPLLLMNSFNTHDDTSKIIEKYSKSNVEI 157 (469)
Q Consensus 79 k~avviLAGG~GTRmg~-~~PK~l~~v~~gks~L~~~~~~i~~l~~~~~~~iplviMtS~~t~e~t~~~~~~~~g~~~~i 157 (469)
++.+||||||.|||||+ +.||.++++ .|+|+|+|.++++..... --.+++.++....+.+.+.++++.... .+
T Consensus 3 ~~~aIIlAaG~g~Rm~~~~~pK~l~~l-~Gkpll~~~l~~~~~~~~----~~~ivvv~~~~~~~~~~~~~~~~~~~~-~~ 76 (246)
T 3f1c_A 3 LIYAQILAGGKGTRMGNVSMPKQFLPL-NGKPIIVHTVEKFILNTR----FDKILISSPKEWMNHAEDNIKKYISDD-RI 76 (246)
T ss_dssp CEEEEEECC-----C-CSSCCGGGSEE-TTEEHHHHHHHHHHTCTT----CSEEEEEECGGGHHHHHHHHHHHCCCT-TE
T ss_pred ccEEEEECCccccccCCCCCCCeEEEE-CCeeHHHHHHHHHHcCCC----CCEEEEEeCHHHHHHHHHHHHHhCCCC-CE
Confidence 57899999999999998 889999999 999999999999987641 113444445532334566666654321 23
Q ss_pred EEEEecCcceecCCCCcccCCCCCCCCcccccCCCcccchhccccchHHHHHH----cCCcEEEEEeCcc-ccccccH-H
Q 012172 158 HTFNQSQYPRLCADDFVPLPCKGKTDKDGWYPPGHGDVFPSLMNSGKLDALIS----QGKEYVFAANSDN-LGAIVDL-K 231 (469)
Q Consensus 158 ~~f~Q~~~P~l~~~~~~~~~~~~~~~~~~~~P~GhGd~~~~L~~sg~L~~l~~----~G~~~v~v~n~DN-L~~~~dp-~ 231 (469)
.+ .++ |.|-. .++.. | ++.+.. .+.++++|.++|. |....+. .
T Consensus 77 ~~-~~~---------------------------~~~~~-~sv~~-a-l~~l~~~~~~~~~~~vlv~~~d~Pli~~~~i~~ 125 (246)
T 3f1c_A 77 VV-IEG---------------------------GEDRN-ETIMN-G-IRFVEKTYGLTDDDIIVTHDAVRPFLTHRIIEE 125 (246)
T ss_dssp EE-EEC---------------------------CSSHH-HHHHH-H-HHHHHHHTCCCTTCEEEEEETTCTTCCHHHHHH
T ss_pred EE-ECC---------------------------CCchH-HHHHH-H-HHHHhhhhcCCCCCEEEEecCcccCCCHHHHHH
Confidence 22 221 12211 11111 1 234443 1358999999999 8765443 4
Q ss_pred HHHHHHHcCCcceEEEeeeccCCCcceEEEEe-C-CeeEEEEeccCChhhhhhccccccccEEEEEeEEEeHHHHHHHHH
Q 012172 232 ILNHLIQNKNEYCMEVTPKTLADVKGGTLISY-E-GKVQLLEIAQVPDEHVNEFKSIEKFKIFNTNNLWVNLKAIKRLVE 309 (469)
Q Consensus 232 ~Lg~~~~~~~~~~~~v~~k~~~~~~~G~iv~~-~-g~~~ivEy~~~~~e~~~~~~~~~~~~~~Nt~~~~~~l~~L~~~l~ 309 (469)
++..+.+.+ .++.+++..+ ++++. + |.+..+|.++. +...- .-.+|+.+.|.+.++
T Consensus 126 li~~~~~~~--a~i~~~~~~d------~i~~~~~~~~v~~~~~r~~-------------l~~~q-tpq~f~~~~L~~a~~ 183 (246)
T 3f1c_A 126 NIDAALETG--AVDTVIEALD------TIVESSNHEVITDIPVRDH-------------MYQGQ-TPQSFNMKKVFNHYQ 183 (246)
T ss_dssp HHHHHHHTS--EEEEEEECSS------CEEECSSSSBCCBCCCGGG-------------EEEEE-EEEEEEHHHHHHHHH
T ss_pred HHHHHHhcC--CEEEEEeccc------eEEEecCCCeEEEecChHH-------------hhhhc-CCceeEHHHHHHHHH
Confidence 455554433 3333333322 33442 2 33433332211 11111 224899999999887
Q ss_pred hcccccccccCCCcCCCcceehhHHHhhhHhhhcccceeEeecCccccccCCchhHHHHHHHHHHhhcC
Q 012172 310 ADALKMEIIPNPKEVDGIKVLQLETAAGAAIRFFDHAIGCNVHRSRFLPVKATSDLLLVQSDLYTLADG 378 (469)
Q Consensus 310 ~~~~~lp~~~n~K~~~g~~~iqle~~~~d~~~~~~~~~~v~v~r~eF~pVKn~~dL~~~~~~~~~l~~g 378 (469)
+ ..+. +++ .+.....-+.....++.+++.+ .+...|+++.||..+++.++...++
T Consensus 184 ~-------~~~~----~~~--~~TD~~~~~~~~g~~v~~v~~~-~~~~~Itt~~Dl~~ae~~l~~~~~~ 238 (246)
T 3f1c_A 184 N-------LTPE----KKQ--ILTDACKICLLAGDDVKLVKGE-IFNIKITTPYDLKVANAIIQERIAN 238 (246)
T ss_dssp T-------SCHH----HHH--HCCCHHHHHHHTTCCCEEEECC-TTCCCCCSHHHHHHHHHHHHHHC--
T ss_pred H-------HHHc----CCC--ccCcHHHHHHHcCCCEEEEeCC-CCccCcCCHHHHHHHHHHHhccccc
Confidence 5 2111 111 0000111111112344555554 6789999999999999988765543
|
| >2pa4_A UTP-glucose-1-phosphate uridylyltransferase; phosphorylase, nucleotidyltransferase, metabolism; HET: GUD; 2.00A {Corynebacterium glutamicum atcc 13032} | Back alignment and structure |
|---|
Probab=99.23 E-value=1.3e-10 Score=116.50 Aligned_cols=234 Identities=17% Similarity=0.125 Sum_probs=136.7
Q ss_pred eeEEEEcCCCCCcCCC---CCCccccccCCCCchHHHHHHHHHHhhhhcCCcccEEEecCCCChHHHHHHHHHhc-----
Q 012172 80 LVVLKLNGGLGTTMGC---TGPKSVIEVRNGLTFLDLIVIQIENLNAKYGCNVPLLLMNSFNTHDDTSKIIEKYS----- 151 (469)
Q Consensus 80 ~avviLAGG~GTRmg~---~~PK~l~~v~~gks~L~~~~~~i~~l~~~~~~~iplviMtS~~t~e~t~~~~~~~~----- 151 (469)
+.+||||||.||||+. ..||.|+|+ .|+||++++++++...+- . .++|.|++ ..+.+.+++....
T Consensus 13 ~~aVIlAaG~gtRl~plt~~~pK~ll~i-~gkpli~~~l~~l~~~gi----~-~iivv~~~-~~~~i~~~~~~~~~~~~~ 85 (323)
T 2pa4_A 13 KTVVVPAAGLGTRFLPATKTVPKELLPV-VDTPGIELIAAEAAELGA----T-RLAIITAP-NKAGVLAHFERSSELEET 85 (323)
T ss_dssp CEEEEECCCCCGGGTTGGGTSCGGGCEE-TTEEHHHHHHHHHHHTTC----C-EEEEEECT-TCHHHHHTTSCCHHHHHH
T ss_pred eEEEEECCCCccccCccccCCCceeeeE-CCEEHHHHHHHHHHhCCC----C-EEEEEecC-cHHHHHHHHhccchhhhh
Confidence 5689999999999986 779999999 899999999999987531 1 34555555 4566766653200
Q ss_pred ----C------------CCCceEEEEecCcceecCCCCcccCCCCCCCCcccccCCCcccchhccccchHHHHHHcCCcE
Q 012172 152 ----K------------SNVEIHTFNQSQYPRLCADDFVPLPCKGKTDKDGWYPPGHGDVFPSLMNSGKLDALISQGKEY 215 (469)
Q Consensus 152 ----g------------~~~~i~~f~Q~~~P~l~~~~~~~~~~~~~~~~~~~~P~GhGd~~~~L~~sg~L~~l~~~G~~~ 215 (469)
+ .+.++.+..|. .|.|+|+.+..... . +....++
T Consensus 86 l~~~~~~~~~~~~~~~~~g~~i~~~~~~------------------------~~~Gt~~al~~a~~-----~-l~~~~d~ 135 (323)
T 2pa4_A 86 LMERGKTDQVEIIRRAADLIKAVPVTQD------------------------KPLGLGHAVGLAES-----V-LDDDEDV 135 (323)
T ss_dssp HHHTTCHHHHHHTTHHHHHCEEEEEECS------------------------SCCCHHHHHHTTGG-----G-SCSSCCE
T ss_pred hhccchhhhhhhhhccccCcceEEEeCC------------------------ccCCcHHHHHHHHH-----H-hcCCCCe
Confidence 0 00123333332 24678887543322 1 1123356
Q ss_pred EEEEeCccccc-cccH-HHHHHHHHcCCcceEEEeee-ccCCCcceEEEEe----CC---ee-EEEEeccCChhhhhhcc
Q 012172 216 VFAANSDNLGA-IVDL-KILNHLIQNKNEYCMEVTPK-TLADVKGGTLISY----EG---KV-QLLEIAQVPDEHVNEFK 284 (469)
Q Consensus 216 v~v~n~DNL~~-~~dp-~~Lg~~~~~~~~~~~~v~~k-~~~~~~~G~iv~~----~g---~~-~ivEy~~~~~e~~~~~~ 284 (469)
++|+++|++.. ..+. .++.++.+.++ ..+.+... ..+...+|++... ++ ++ .++|.... +.
T Consensus 136 ~lv~~~D~~~~~~~~l~~l~~~~~~~~~-~~i~~~~~~~~~~~~yg~v~~d~~~~~~~~~~V~~~~Ekp~~--~~----- 207 (323)
T 2pa4_A 136 VAVMLPDDLVLPTGVMERMAQVRAEFGG-SVLCAVEVSEADVSKYGIFEIEADTKDSDVKKVKGMVEKPAI--ED----- 207 (323)
T ss_dssp EEEECTTEEEESSCHHHHHHHHHHTTCS-EEEEEEECCGGGGGGSEEEEEEECCSSTTEEEEEEEEESCCT--TT-----
T ss_pred EEEEeCCcccCchHHHHHHHHHHHhcCC-cEEEEEEecccccCCccEEEeCCcccCCCceeEEEEEECCCC--cc-----
Confidence 99999999444 2343 34555544443 23333322 1345678877654 33 44 35663211 11
Q ss_pred ccccccEEEEEeEEEeHHHHHHHHHhcccccccccCCCcCCCcceehhHHHhhhHhhhcccceeEeecCccccccCCchh
Q 012172 285 SIEKFKIFNTNNLWVNLKAIKRLVEADALKMEIIPNPKEVDGIKVLQLETAAGAAIRFFDHAIGCNVHRSRFLPVKATSD 364 (469)
Q Consensus 285 ~~~~~~~~Nt~~~~~~l~~L~~~l~~~~~~lp~~~n~K~~~g~~~iqle~~~~d~~~~~~~~~~v~v~r~eF~pVKn~~d 364 (469)
......|+|+|+|+.+.+. .+.+ .... ..+ .+.+...+...++...++.++.++. .+.-|.+..|
T Consensus 208 --~~~~~~~~GiY~~~~~~~~-~l~~-------~~~~--~~g--e~~l~d~i~~l~~~g~~v~~~~~~g-~w~DIgt~~d 272 (323)
T 2pa4_A 208 --APSRLAATGRYLLDRKIFD-ALRR-------ITPG--AGG--ELQLTDAIDLLIDEGHPVHIVIHQG-KRHDLGNPGG 272 (323)
T ss_dssp --CSCSEEEEEEEEEETHHHH-HHHH-------CCCC--GGG--CCCHHHHHHHHHHTTCCEEEEECCS-EEEECSSHHH
T ss_pred --ccccEEEEEEEEECHHHHH-HHHh-------hCCC--CCC--eEeHHHHHHHHHHcCCCEEEEEeCC-eEEeCCCHHH
Confidence 1224689999999998664 4333 1110 102 2334444444444434566666653 7889999999
Q ss_pred HHHHHHHHH
Q 012172 365 LLLVQSDLY 373 (469)
Q Consensus 365 L~~~~~~~~ 373 (469)
+..++..+.
T Consensus 273 l~~a~~~~~ 281 (323)
T 2pa4_A 273 YIPACVDFG 281 (323)
T ss_dssp HHHHHHHHH
T ss_pred HHHHHHHHh
Confidence 988876654
|
| >2ux8_A Glucose-1-phosphate uridylyltransferase; UGPG, GALU pyrophosphorylase, nucleotidyltransferase; HET: G1P; 2.65A {Sphingomonas elodea} | Back alignment and structure |
|---|
Probab=99.18 E-value=1.4e-10 Score=114.62 Aligned_cols=233 Identities=13% Similarity=0.069 Sum_probs=124.7
Q ss_pred cceeEEEEcCCCCCcCCC---CCCccccccCCCCchHHHHHHHHHHhhhhcCCcccEEEecCCCChHHHHHHHHHhc---
Q 012172 78 DKLVVLKLNGGLGTTMGC---TGPKSVIEVRNGLTFLDLIVIQIENLNAKYGCNVPLLLMNSFNTHDDTSKIIEKYS--- 151 (469)
Q Consensus 78 ~k~avviLAGG~GTRmg~---~~PK~l~~v~~gks~L~~~~~~i~~l~~~~~~~iplviMtS~~t~e~t~~~~~~~~--- 151 (469)
..+.+||||||.||||+. ..||.|+|+ .|+||++++++++...+-. .++|.|++ ..+.+.+++....
T Consensus 13 ~~~~avIlAaG~gtRl~plt~~~pK~ll~i-~gkpli~~~l~~l~~~g~~-----~i~vv~~~-~~~~i~~~~~~~~~l~ 85 (297)
T 2ux8_A 13 PLRKAVFPVAGLGTRFLPATKAMPKEMLPV-VDRPLIQYAVDEAVEAGIE-----QMIFVTGR-GKSALEDHFDIAYELE 85 (297)
T ss_dssp CCCEEEEEECCCCGGGTTTTSSSCGGGCEE-TTEEHHHHHHHHHHHTTCC-----EEEEEECT-TCHHHHHHTSCCHHHH
T ss_pred CccEEEEECCCCccccCccccCCCceeeeE-CCeEHHHHHHHHHHhCCCC-----EEEEEeCC-CHHHHHHHHhhhhhhh
Confidence 457789999999999985 679999999 8999999999999876421 34555555 4677777764310
Q ss_pred ------C-----------CCCceEEEEecCcceecCCCCcccCCCCCCCCcccccCCCcccchhccccchHHHHHHcCCc
Q 012172 152 ------K-----------SNVEIHTFNQSQYPRLCADDFVPLPCKGKTDKDGWYPPGHGDVFPSLMNSGKLDALISQGKE 214 (469)
Q Consensus 152 ------g-----------~~~~i~~f~Q~~~P~l~~~~~~~~~~~~~~~~~~~~P~GhGd~~~~L~~sg~L~~l~~~G~~ 214 (469)
+ .+.++.+..|. .|.|+|+.+.... +. + +-+
T Consensus 86 ~~l~~~~~~~~~~~~~~~~g~~i~~~~~~------------------------~~~Gt~~al~~a~-----~~-~--~~~ 133 (297)
T 2ux8_A 86 ATMAARGKSLDVLDGTRLKPGNIAYVRQQ------------------------EPMGLGHAVWCAR-----DI-V--GDE 133 (297)
T ss_dssp HHHHTTTCCGGGGTTSCCSTTSEEEEECC------------------------SCCCHHHHHHTTH-----HH-H--CSS
T ss_pred hhhhhccchhhhhhhcccCCCceEEEeCC------------------------CCCChHHHHHHHH-----HH-c--CCC
Confidence 0 00123222221 2578888754322 22 2 237
Q ss_pred EEEEEeCccccc--cccH-HHHHHHHHcCCcceEEEeee-ccCCCcceEEEEe---CC--ee-EEEEeccCChhhhhhcc
Q 012172 215 YVFAANSDNLGA--IVDL-KILNHLIQNKNEYCMEVTPK-TLADVKGGTLISY---EG--KV-QLLEIAQVPDEHVNEFK 284 (469)
Q Consensus 215 ~v~v~n~DNL~~--~~dp-~~Lg~~~~~~~~~~~~v~~k-~~~~~~~G~iv~~---~g--~~-~ivEy~~~~~e~~~~~~ 284 (469)
+++|+++|++.. ..+. .++..+.+.++ ..+.+... ..++..+|++... +| ++ .++|.... +.
T Consensus 134 ~~lv~~~D~~~~~~~~~l~~l~~~~~~~~~-~~i~~~~~~~~~~~~yg~v~~~~~~~~~~~v~~~~ekp~~--~~----- 205 (297)
T 2ux8_A 134 PFAVLLPDDFMFGQPGCLKQMVDAYNKVGG-NLICAEEVPDDQTHRYGIITPGTQDGVLTEVKGLVEKPAP--GT----- 205 (297)
T ss_dssp CEEEECTTEEEESSSCHHHHHHHHHHHHCS-EEEEEC-----------CCCCCCBCSSEEEC------------------
T ss_pred cEEEEeCCeecCCChHHHHHHHHHHHhcCC-CEEEEEecCcccCCCCCeEEecccCCCceeEEEEEECCCC--CC-----
Confidence 899999999644 2332 44555555454 33333322 1355678877543 34 44 34553211 11
Q ss_pred ccccccEEEEEeEEEeHHHHHHHHHhcccccccccCCCcCCCcceehhHHHhhhHhhhcccceeEeecCccccccCCchh
Q 012172 285 SIEKFKIFNTNNLWVNLKAIKRLVEADALKMEIIPNPKEVDGIKVLQLETAAGAAIRFFDHAIGCNVHRSRFLPVKATSD 364 (469)
Q Consensus 285 ~~~~~~~~Nt~~~~~~l~~L~~~l~~~~~~lp~~~n~K~~~g~~~iqle~~~~d~~~~~~~~~~v~v~r~eF~pVKn~~d 364 (469)
..-.+.|+|+|+|+.+.+ +.+++ +... ..++ +.+..++..+++. .++.++.++. .+.-|.+..|
T Consensus 206 --~~~~~~~~Giyi~~~~~l-~~l~~-------~~~~--~~~~--~~l~d~i~~l~~~-~~v~~~~~~~-~w~dIgt~~d 269 (297)
T 2ux8_A 206 --APSNLSVIGRYILQPEVM-RILEN-------QGKG--AGGE--IQLTDAMQRMIGD-QPFHGVTFQG-TRYDCGDKAG 269 (297)
T ss_dssp -----CCCEEEEEEECTHHH-HHHHH-------TC------------CCTTGGGGTTT-SCEEEEECSS-EEEETTSHHH
T ss_pred --CCccEEEEEEEEECHHHH-HHHHh-------hCCC--CCCe--eEHHHHHHHHHhc-CCEEEEEecc-eEEeCCCHHH
Confidence 112357999999998866 44443 1110 0012 1122222222222 2344555543 7889999999
Q ss_pred HHHHHHHHH
Q 012172 365 LLLVQSDLY 373 (469)
Q Consensus 365 L~~~~~~~~ 373 (469)
+..++.++.
T Consensus 270 l~~a~~~~~ 278 (297)
T 2ux8_A 270 FIQANLAVA 278 (297)
T ss_dssp HHHHHHHHH
T ss_pred HHHHHHHHH
Confidence 988876654
|
| >1ezi_A CMP-N-acetylneuraminic acid synthetase; homodimer, alpha-beta-alpha, transferase; 2.00A {Neisseria meningitidis} SCOP: c.68.1.13 PDB: 1eyr_A | Back alignment and structure |
|---|
Probab=99.13 E-value=4.5e-10 Score=106.42 Aligned_cols=217 Identities=7% Similarity=0.029 Sum_probs=120.5
Q ss_pred ceeEEEEcCCCCCcCCCCCCccccccCCCCchHHHHHHHHHHhhhhcCCcccEEEecCCCChHHHHHHHHHhcCCCCceE
Q 012172 79 KLVVLKLNGGLGTTMGCTGPKSVIEVRNGLTFLDLIVIQIENLNAKYGCNVPLLLMNSFNTHDDTSKIIEKYSKSNVEIH 158 (469)
Q Consensus 79 k~avviLAGG~GTRmg~~~PK~l~~v~~gks~L~~~~~~i~~l~~~~~~~iplviMtS~~t~e~t~~~~~~~~g~~~~i~ 158 (469)
++.+||||||.||||+ ||.++++ .|+||++|.++++.+... --.+++.|. ++.+.++++++ .+.
T Consensus 4 ~~~aiIlA~G~g~R~~---~K~l~~i-~gkpll~~~l~~~~~~~~----~~~ivvv~~---~~~i~~~~~~~-----~~~ 67 (228)
T 1ezi_A 4 QNIAVILARQNSKGLP---LKNLRKM-NGISLLGHTINAAISSKC----FDRIIVSTD---GGLIAEEAKNF-----GVE 67 (228)
T ss_dssp EEEEEEECCSSCSSST---TTTTCEE-TTEEHHHHHHHHHHHHCC----CSEEEEEES---CHHHHHHHHHT-----TCE
T ss_pred ceEEEEecCCCCCCCC---Cccccee-CCcCHHHHHHHHHHhCCC----CCEEEEECC---CHHHHHHHHHc-----CCE
Confidence 5789999999999999 9999999 999999999999987641 014455443 46667777653 123
Q ss_pred EEEecCcceecCCCCcccCCCCCCCCcccccCCCcccchhccccchHHHHHHcCCcEEEEEeCcc-ccccccH-HHHHHH
Q 012172 159 TFNQSQYPRLCADDFVPLPCKGKTDKDGWYPPGHGDVFPSLMNSGKLDALISQGKEYVFAANSDN-LGAIVDL-KILNHL 236 (469)
Q Consensus 159 ~f~Q~~~P~l~~~~~~~~~~~~~~~~~~~~P~GhGd~~~~L~~sg~L~~l~~~G~~~v~v~n~DN-L~~~~dp-~~Lg~~ 236 (469)
++.+.. .+ .+.|.|- ..++.. + ++.+ ....++++++++|+ +....+. .++..+
T Consensus 68 ~~~~~~-------------------~~--~~~~~g~-~~sv~~-~-l~~~-~~~~d~vlv~~~D~P~~~~~~i~~l~~~~ 122 (228)
T 1ezi_A 68 VVLRPA-------------------EL--ASDTASS-ISGVIH-A-LETI-GSNSGTVTLLQPTSPLRTGAHIREAFSLF 122 (228)
T ss_dssp EEECCC---------------------------CHH-HHHHHH-H-HHHH-TCCSEEEEECCTTCTTCCHHHHHHHHTTC
T ss_pred EEeCch-------------------HH--cCCCCCh-HHHHHH-H-HHHh-CCCCCEEEEEcCCCCcCCHHHHHHHHHHH
Confidence 232210 00 0112221 112221 1 2222 22457999999999 7664442 222222
Q ss_pred HHcCCcceEEEeeeccCCCcceEEEEeCCeeE-EEEecc-CChhhhhhccccccccEEEEEeEEEeHHHHHHHHHhcccc
Q 012172 237 IQNKNEYCMEVTPKTLADVKGGTLISYEGKVQ-LLEIAQ-VPDEHVNEFKSIEKFKIFNTNNLWVNLKAIKRLVEADALK 314 (469)
Q Consensus 237 ~~~~~~~~~~v~~k~~~~~~~G~iv~~~g~~~-ivEy~~-~~~e~~~~~~~~~~~~~~Nt~~~~~~l~~L~~~l~~~~~~ 314 (469)
.+.+++.++.+++..+.+.+.+++ ..+|.+. ++|.+. .+. ++........|.|.|+++.+.+.+.+.
T Consensus 123 ~~~~~~~~~~~~~~~~~p~~~~~~-~~~g~~~~~~~~~~~~~~-----~~~~~~~~~~~~giy~~~~~~l~~~~~----- 191 (228)
T 1ezi_A 123 DEKIKGSVVSACPMEHHPLKTLLQ-INNGEYAPMRHLSDLEQP-----RQQLPQAFRPNGAIYINDTASLIANNC----- 191 (228)
T ss_dssp CTTTCCCEEEEEECSSCTTSCEEE-CC--CEEESSCHHHHTCC-----GGGSCCEEEEEEEEEEEEHHHHHHHTS-----
T ss_pred HhcCCCEEEEEEecCCCcceeeEE-cCCCcEeeccccccccCC-----cccCchhheeeeEEEEEeHHHHhhCCc-----
Confidence 233456666665554423333332 3345542 334221 110 111112234589999999888765421
Q ss_pred cccccCCCcCCCcceehhHHHhhhHhhhcccceeEeecCccccccCCchhHHHHHHHHH
Q 012172 315 MEIIPNPKEVDGIKVLQLETAAGAAIRFFDHAIGCNVHRSRFLPVKATSDLLLVQSDLY 373 (469)
Q Consensus 315 lp~~~n~K~~~g~~~iqle~~~~d~~~~~~~~~~v~v~r~eF~pVKn~~dL~~~~~~~~ 373 (469)
++ + .++..+.++...+.-|.+..|+..++..+.
T Consensus 192 --~~------------------g------~~v~~~~~~~~~~~dIdtpeDl~~a~~~l~ 224 (228)
T 1ezi_A 192 --FF------------------I------APTKLYIMSHQDSIDIDTELDLQQAENILN 224 (228)
T ss_dssp --SC------------------C------SSCEEEECCTGGGCCCCSHHHHHHHHHHHC
T ss_pred --cc------------------C------CceEEEEeCcccccCCCCHHHHHHHHHHHH
Confidence 00 1 223445555567899999999999887653
|
| >1qwj_A Cytidine monophospho-N-acetylneuraminic acid synthetase; CMP-5-N-acetylneuraminic acid synthetase, CMP-NEU5AC, sialic acid, glycosylation; HET: NCC; 2.80A {Mus musculus} SCOP: c.68.1.13 | Back alignment and structure |
|---|
Probab=99.11 E-value=5.9e-10 Score=106.07 Aligned_cols=217 Identities=9% Similarity=0.062 Sum_probs=122.8
Q ss_pred ceeEEEEcCCCCCcCCCCCCccccccCCCCchHHHHHHHHHHhhhhcCCcccEEEecCCCChHHHHHHHHHhcCCCCceE
Q 012172 79 KLVVLKLNGGLGTTMGCTGPKSVIEVRNGLTFLDLIVIQIENLNAKYGCNVPLLLMNSFNTHDDTSKIIEKYSKSNVEIH 158 (469)
Q Consensus 79 k~avviLAGG~GTRmg~~~PK~l~~v~~gks~L~~~~~~i~~l~~~~~~~iplviMtS~~t~e~t~~~~~~~~g~~~~i~ 158 (469)
++.+||||||.||||+ +|.|+++ .|+||++|+++++.+... --.+++-| .++.+.++++++ .+.
T Consensus 3 ~~~aiIlA~G~s~R~~---~K~l~~i-~Gkpli~~~i~~~~~~~~----~~~ivv~~---~~~~i~~~~~~~-----g~~ 66 (229)
T 1qwj_A 3 HLAALVLARGGSKGIP---LKNIKRL-AGVPLIGWVLRAALDAGV----FQSVWVST---DHDEIENVAKQF-----GAQ 66 (229)
T ss_dssp CEEEEEECCSCCSSSS---CTTTSEE-TTEEHHHHHHHHHHHHTC----CSEEEEEE---SCHHHHHHHHHT-----TCE
T ss_pred cEEEEEEcCCCCCCCC---CcccceE-CCEEHHHHHHHHHHhCCC----cCEEEEEC---ChHHHHHHHHHc-----CCE
Confidence 5788999999999996 5999999 999999999999988642 01345544 356777777653 234
Q ss_pred EEEecCcceecCCCCcccCCCCCCCCcccccCCCcccchhccccchHHHHHHcCCcEEEEEeCcc-ccccccH-HHHHHH
Q 012172 159 TFNQSQYPRLCADDFVPLPCKGKTDKDGWYPPGHGDVFPSLMNSGKLDALISQGKEYVFAANSDN-LGAIVDL-KILNHL 236 (469)
Q Consensus 159 ~f~Q~~~P~l~~~~~~~~~~~~~~~~~~~~P~GhGd~~~~L~~sg~L~~l~~~G~~~v~v~n~DN-L~~~~dp-~~Lg~~ 236 (469)
++.+... + ....+.|.+.+..++. .+ .+.++++++++|+ |....+. .++..+
T Consensus 67 ~~~~~~~----------~--------~~~~~~~~~~v~~al~------~~--~~~d~vlv~~~D~Pli~~~~i~~l~~~~ 120 (229)
T 1qwj_A 67 VHRRSSE----------T--------SKDSSTSLDAIVEFLN------YH--NEVDIVGNIQATSPCLHPTDLQKVAEMI 120 (229)
T ss_dssp EEECCGG----------G--------SSTTCCHHHHHHHHHT------TC--TTCSEEEEECTTCTTCCHHHHHHHHHHH
T ss_pred EEeChhh----------h--------cCCCCcHHHHHHHHHH------hc--CCCCEEEEecCCCCcCCHHHHHHHHHHH
Confidence 3444310 0 0001122222222221 11 1457999999999 7765443 445555
Q ss_pred HHcCCcceEEEeeeccCCCcceEEEEeCCeeEEEEeccCChhh-hhhccccccccEEEEEeEEEeHHHHHHHHHhccccc
Q 012172 237 IQNKNEYCMEVTPKTLADVKGGTLISYEGKVQLLEIAQVPDEH-VNEFKSIEKFKIFNTNNLWVNLKAIKRLVEADALKM 315 (469)
Q Consensus 237 ~~~~~~~~~~v~~k~~~~~~~G~iv~~~g~~~ivEy~~~~~e~-~~~~~~~~~~~~~Nt~~~~~~l~~L~~~l~~~~~~l 315 (469)
.+.+++..+.++ +...+..+++ . +|...+.+ ++.+... ....+........|+|.|+++.+.| +.
T Consensus 121 ~~~~~~~~~~~~-~~~~p~~~~v--~-~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~n~giY~~~~~~l---~~------ 186 (229)
T 1qwj_A 121 REEGYDSVFSVV-RRHQFRWSEI--Q-KGVREVTE-PLNLNPAKRPRRQDWDGELYENGSFYFAKRHLI---EM------ 186 (229)
T ss_dssp HSSCCSEEEEEE-EECCCEECCC--C-SSTTCCCC-BSSSBTTBCCCTTTSCCEEEEEEEEEEEEHHHH---HT------
T ss_pred HhCCCCEEEEEe-eccChhHhhc--c-cccccccc-ccccccccccCCCCCCceEEEeeEEEEEEHHHh---cc------
Confidence 555666666555 3333444443 1 22111111 1111110 0000111223356999999998877 11
Q ss_pred ccccCCCcCCCcceehhHHHhhhHhhhcccceeE-eecCccccccCCchhHHHHHHHHHHh
Q 012172 316 EIIPNPKEVDGIKVLQLETAAGAAIRFFDHAIGC-NVHRSRFLPVKATSDLLLVQSDLYTL 375 (469)
Q Consensus 316 p~~~n~K~~~g~~~iqle~~~~d~~~~~~~~~~v-~v~r~eF~pVKn~~dL~~~~~~~~~l 375 (469)
.+.+.+ ...+ .++..++..|++..|+..++..+..+
T Consensus 187 -~~~~g~-----------------------~~~~~~~~~~~~~dIdt~~Dl~~a~~~~~~~ 223 (229)
T 1qwj_A 187 -GYLQGG-----------------------KMAYYEMRAEHSVDIDVDIDWPIAEQRVLRF 223 (229)
T ss_dssp -TCSSCS-----------------------SEEEEECCGGGCCCHHHHCSHHHHHHHHHHH
T ss_pred -ccccCC-----------------------eEEEEECCcccccCCCCHHHHHHHHHHHHHh
Confidence 111111 1123 44556889999999999999887655
|
| >2x65_A Mannose-1-phosphate guanylyltransferase; nucleotidyltransferase; HET: M1P; 2.10A {Thermotoga maritima} PDB: 2x5z_A* 2x60_A* 2x5s_A* | Back alignment and structure |
|---|
Probab=99.02 E-value=1.5e-09 Score=109.77 Aligned_cols=186 Identities=14% Similarity=0.141 Sum_probs=106.1
Q ss_pred eeEEEEcCCCCCcCC----CCCCccccccCCC-CchHHHHHHHHHHh-hhhcCCcccEEEecCCCChHHHHHHHHHhcCC
Q 012172 80 LVVLKLNGGLGTTMG----CTGPKSVIEVRNG-LTFLDLIVIQIENL-NAKYGCNVPLLLMNSFNTHDDTSKIIEKYSKS 153 (469)
Q Consensus 80 ~avviLAGG~GTRmg----~~~PK~l~~v~~g-ks~L~~~~~~i~~l-~~~~~~~iplviMtS~~t~e~t~~~~~~~~g~ 153 (469)
+.+||||||.||||+ ...||.++++ .| +|||++.++++..+ .-. .+++.|++...+.+.+++...
T Consensus 2 m~~VILAgG~GtRl~Pls~~~~pK~ll~l-~g~~pli~~~l~~l~~~~~~~-----~iivvt~~~~~~~i~~~l~~~--- 72 (336)
T 2x65_A 2 MKALILAGGSGERFWPLSTPETPKQFLKL-FGNKSLMRWTFERVLEEMDPK-----DVIVVTHKDYVERTKKELPEL--- 72 (336)
T ss_dssp CEEEEECCCBCGGGTTTSCTTCBGGGCCC-BTTBCHHHHHHHHHHTTCCGG-----GEEEEEEGGGHHHHHHHCTTS---
T ss_pred eEEEEECCCCCccCCCCcCCCCCceEEEC-CCCCcHHHHHHHHHhccCCCC-----cEEEEcChHHHHHHHHHhhcc---
Confidence 357899999999998 5689999999 66 99999999999876 221 344444542233455544321
Q ss_pred CCceEEEEecCcceecCCCCcccCCCCCCCCcccccCCCcccchhccccchHHHHHHcCCcEEEEEeCcccccc-ccH-H
Q 012172 154 NVEIHTFNQSQYPRLCADDFVPLPCKGKTDKDGWYPPGHGDVFPSLMNSGKLDALISQGKEYVFAANSDNLGAI-VDL-K 231 (469)
Q Consensus 154 ~~~i~~f~Q~~~P~l~~~~~~~~~~~~~~~~~~~~P~GhGd~~~~L~~sg~L~~l~~~G~~~v~v~n~DNL~~~-~dp-~ 231 (469)
+ ...++.|. .|.|+|++...... . . ..-++++|+++|.+... .+. .
T Consensus 73 ~-~~~ii~e~------------------------~~~gta~ai~~a~~-----~-~-~~~~~~lvl~~D~~~~~~~~~~~ 120 (336)
T 2x65_A 73 P-DENIIAEP------------------------MKKNTAPACFIGTK-----L-A-DDDEPVLVLPADHRIPDTKKFWK 120 (336)
T ss_dssp C-GGGEEEES------------------------SCCCHHHHHHHHHT-----T-S-CTTCEEEEEETTCBCCCHHHHHH
T ss_pred c-cceEEeCC------------------------CCCCcHHHHHHHHH-----h-h-CCCCEEEEEcCCceeccHHHHHH
Confidence 1 11112221 24677776432211 1 1 12368999999995432 121 1
Q ss_pred HHH----HHHHcCCcceEEEeeeccCCCcceEEEEeC------Cee-EEEEeccCChhhhhhccccccccEEEEEeEEEe
Q 012172 232 ILN----HLIQNKNEYCMEVTPKTLADVKGGTLISYE------GKV-QLLEIAQVPDEHVNEFKSIEKFKIFNTNNLWVN 300 (469)
Q Consensus 232 ~Lg----~~~~~~~~~~~~v~~k~~~~~~~G~iv~~~------g~~-~ivEy~~~~~e~~~~~~~~~~~~~~Nt~~~~~~ 300 (469)
++. ++.+.+...++. +..+.+..+||.+...+ +++ .++|-.+.+.. +.+-. ...-+.|+|+|+|+
T Consensus 121 ~l~~~~~~~~~~~~~vt~~-i~p~~~~~~yG~I~~~~~~~~~~~~V~~f~EKp~~~~a--~~~~~-~g~y~~n~Giy~~~ 196 (336)
T 2x65_A 121 TVKKALDALEKYDGLFTFG-IVPTRPETGYGYIEIGEELEEGVHKVAQFREKPDLETA--KKFVE-SGRFLWNSGMFLWK 196 (336)
T ss_dssp HHHHHHHHHHHHCSEEEEE-ECCCSCCSSSEEEEEEEEEETTEEEEEEEEESCCHHHH--HHHHH-HTCEEEEEEEEEEE
T ss_pred HHHHHHHHHHhcCCeEEEE-eecccCCCCceEEEECCccCCCccEEEEEEECCChHHH--HHHHh-cCCeEEEeeeEEEE
Confidence 222 233335433333 33445567899886532 444 36664332211 11100 11236799999999
Q ss_pred HHHHHHHHHh
Q 012172 301 LKAIKRLVEA 310 (469)
Q Consensus 301 l~~L~~~l~~ 310 (469)
.+.+.+.+++
T Consensus 197 ~~~ll~~l~~ 206 (336)
T 2x65_A 197 AREFIEEVKV 206 (336)
T ss_dssp HHHHHHHHHH
T ss_pred HHHHHHHHHH
Confidence 9988666654
|
| >3q80_A 2-C-methyl-D-erythritol 4-phosphate cytidyltransf; TB structural genomics consortium, TBSGC, rossman fold; HET: CDM; 2.00A {Mycobacterium tuberculosis} SCOP: c.68.1.0 PDB: 3q7u_A* 3okr_A 2xwn_A* | Back alignment and structure |
|---|
Probab=99.01 E-value=7.9e-09 Score=99.04 Aligned_cols=216 Identities=14% Similarity=0.157 Sum_probs=118.0
Q ss_pred ceeEEEEcCCCCCcCCCCCCccccccCCCCchHHHHHHHHHHhhhhcCCcccEEEecCCCChHHHHHHHHHhcCCCCceE
Q 012172 79 KLVVLKLNGGLGTTMGCTGPKSVIEVRNGLTFLDLIVIQIENLNAKYGCNVPLLLMNSFNTHDDTSKIIEKYSKSNVEIH 158 (469)
Q Consensus 79 k~avviLAGG~GTRmg~~~PK~l~~v~~gks~L~~~~~~i~~l~~~~~~~iplviMtS~~t~e~t~~~~~~~~g~~~~i~ 158 (469)
++++||||||.|||||++.||.++++ .|+||++|.++.+.+... --.+++.+++...+.+++++.. .+.
T Consensus 7 ~~~aIIlAaG~g~Rmg~~~~K~l~~l-~Gkpll~~~l~~~~~~~~----~~~ivVv~~~~~~~~~~~~~~~------~v~ 75 (231)
T 3q80_A 7 EVVAIVPAAGSGERLAVGVPKAFYQL-DGQTLIERAVDGLLDSGV----VDTVVVAVPADRTDEARQILGH------RAM 75 (231)
T ss_dssp CEEEEEECCCCCTTTCSSSCGGGCEE-TTEEHHHHHHHHHHHTSC----CCEEEEEECGGGHHHHHHHHGG------GCE
T ss_pred ceEEEEECCCCCccCCCCCCceEEEE-CCeEHHHHHHHHHHhCCC----CCeEEEECChHHHHHHHHHhcC------CeE
Confidence 68899999999999999999999999 999999999999987631 0134454454222444444421 222
Q ss_pred EEEecCcceecCCCCcccCCCCCCCCcccccCCCcccchhccccchHHHHHH-cCCcEEEEEeCcc-ccccccH-HHHHH
Q 012172 159 TFNQSQYPRLCADDFVPLPCKGKTDKDGWYPPGHGDVFPSLMNSGKLDALIS-QGKEYVFAANSDN-LGAIVDL-KILNH 235 (469)
Q Consensus 159 ~f~Q~~~P~l~~~~~~~~~~~~~~~~~~~~P~GhGd~~~~L~~sg~L~~l~~-~G~~~v~v~n~DN-L~~~~dp-~~Lg~ 235 (469)
++..+.-+ ...++.+|. .+.. ...++++|+.+|. |...... .++..
T Consensus 76 ~v~gg~~r-------------------------~~sv~~gl~------~~~~~~~~d~Vlv~~~d~Pli~~~~i~~li~~ 124 (231)
T 3q80_A 76 IVAGGSNR-------------------------TDTVNLALT------VLSGTAEPEFVLVHDAARALTPPALVARVVEA 124 (231)
T ss_dssp EEECCSSH-------------------------HHHHHHHHG------GGC---CCSEEEECCTTCTTCCHHHHHHHHHH
T ss_pred EEcCCCch-------------------------HHHHHHHHH------HhhhcCCCCEEEEEcCCcCCCCHHHHHHHHHH
Confidence 22111000 011222221 1111 1257999999999 8765432 22333
Q ss_pred HHHcCCcceEEEeeeccCCCcceEEEEeCCee-EEEEeccCChhhhhhccccccccEEEEEeEEEeHHHHHHHHHhcccc
Q 012172 236 LIQNKNEYCMEVTPKTLADVKGGTLISYEGKV-QLLEIAQVPDEHVNEFKSIEKFKIFNTNNLWVNLKAIKRLVEADALK 314 (469)
Q Consensus 236 ~~~~~~~~~~~v~~k~~~~~~~G~iv~~~g~~-~ivEy~~~~~e~~~~~~~~~~~~~~Nt~~~~~~l~~L~~~l~~~~~~ 314 (469)
+. .+.+.++-+++-.++ - +. +..+|.+ .++| ...+...+|- .+|+.+.|.+.+++
T Consensus 125 ~~-~~~~~~i~~~p~~dt-~--~~-~~~~g~v~~~~~--------------r~~l~~~qTP-q~F~~~~L~~a~~~---- 180 (231)
T 3q80_A 125 LR-DGYAAVVPVLPLSDT-I--KA-VDANGVVLGTPE--------------RAGLRAVQTP-QGFTTDLLLRSYQR---- 180 (231)
T ss_dssp HH-TTCSEEEEEECCSSC-E--EE-ECTTSBEEECCC--------------GGGEEEECSC-EEEEHHHHHHHHHH----
T ss_pred Hh-hcCCeEEEEEeccCC-E--EE-EcCCCcEEEecc--------------hhheEEEcCC-cEEEHHHHHHHHHH----
Confidence 32 224444444443332 1 11 1223443 1221 1345556774 89999999999875
Q ss_pred cccccCCCcCCCcc---eehhHHHhhhHhhhcccceeEeecCccccccCCchhHHHHHHHH
Q 012172 315 MEIIPNPKEVDGIK---VLQLETAAGAAIRFFDHAIGCNVHRSRFLPVKATSDLLLVQSDL 372 (469)
Q Consensus 315 lp~~~n~K~~~g~~---~iqle~~~~d~~~~~~~~~~v~v~r~eF~pVKn~~dL~~~~~~~ 372 (469)
..++| . +.+ ..++-...| .++..++.+ .+-..|+++.||..+++.+
T Consensus 181 ---~~~~n-~-~~~~TD~~~~~~~~g------~~v~~v~g~-~~n~kIt~p~Dl~~ae~~l 229 (231)
T 3q80_A 181 ---GSLDL-P-AAEYTDDASLVEHIG------GQVQVVDGD-PLAFKITTKLDLLLAQAIV 229 (231)
T ss_dssp ---HTC-------CCSSSHHHHHHTT------CCCEEEECC-GGGCCCCSHHHHHHHHHHH
T ss_pred ---HHhhc-C-CCCCCcHHHHHHHcC------CcEEEEECC-ccccCcCCHHHHHHHHHHh
Confidence 33322 1 111 111111112 334444433 3557899999999998765
|
| >2cu2_A Putative mannose-1-phosphate guanylyl transferase; mannose-1-phosphate geranyltransferase, thermus thermophilus structural genomics; 2.20A {Thermus thermophilus} SCOP: b.81.4.1 c.68.1.20 | Back alignment and structure |
|---|
Probab=98.90 E-value=5.2e-09 Score=105.82 Aligned_cols=185 Identities=12% Similarity=0.122 Sum_probs=103.4
Q ss_pred ceeEEEEcCCCCCcCC----CCCCccccccCCC-CchHHHHHHHHHHh-hhhcCCcccEEEecCCCChHHHHHHHHHhcC
Q 012172 79 KLVVLKLNGGLGTTMG----CTGPKSVIEVRNG-LTFLDLIVIQIENL-NAKYGCNVPLLLMNSFNTHDDTSKIIEKYSK 152 (469)
Q Consensus 79 k~avviLAGG~GTRmg----~~~PK~l~~v~~g-ks~L~~~~~~i~~l-~~~~~~~iplviMtS~~t~e~t~~~~~~~~g 152 (469)
++.+||||||.||||. ...||.++++ .| +|||++.++++..+ .-. .+++.|++...+.+ +++.+
T Consensus 2 ~m~~VILAgG~GtRl~Pls~~~~pK~ll~l-~G~~pli~~~l~~l~~~~~~~-----~iiVvt~~~~~~~i----~~~l~ 71 (337)
T 2cu2_A 2 KTYALVMAGGRGERLWPLSREDRPKPFLPL-FEGKTLLEATLERLAPLVPPE-----RTLLAVRRDQEAVA----RPYAD 71 (337)
T ss_dssp CEEEEEECCCCCGGGTTTCBTTBCGGGCBC-GGGCBHHHHHHHHHTTTSCGG-----GEEEEEEGGGHHHH----GGGCS
T ss_pred CeEEEEEcCCCcccCCccCCCCCCceEEEc-CCCChHHHHHHHHHhCcCCCC-----CEEEEcChHHHHHH----HHHhc
Confidence 4678999999999997 5679999999 66 99999999999876 222 34444444112223 33222
Q ss_pred CCCceEEEEecCcceecCCCCcccCCCCCCCCcccccCCCcccchhccccchHHHHHHcCCcEEEEEeCcccccc-ccH-
Q 012172 153 SNVEIHTFNQSQYPRLCADDFVPLPCKGKTDKDGWYPPGHGDVFPSLMNSGKLDALISQGKEYVFAANSDNLGAI-VDL- 230 (469)
Q Consensus 153 ~~~~i~~f~Q~~~P~l~~~~~~~~~~~~~~~~~~~~P~GhGd~~~~L~~sg~L~~l~~~G~~~v~v~n~DNL~~~-~dp- 230 (469)
. ..+ +.| ..|.|+|.+...... +.. ..+-++++|+++|.+... .+.
T Consensus 72 ~-~~~--i~e------------------------~~~~gta~ai~~a~~---l~~--~~~~~~~lvl~~D~~~~~~~~~~ 119 (337)
T 2cu2_A 72 G-IRL--LLE------------------------PLGRDTAGAVLLGVA---EAL--KEGAERLLVLPADHYVGDDEAYR 119 (337)
T ss_dssp S-SEE--EEE------------------------SSCCHHHHHHHHHHH---HHH--HHTCSEEEEEESSCEESCHHHHH
T ss_pred c-Cce--Eec------------------------CCCCCcHHHHHHHHH---Hhc--cCCCCEEEEEECCccCCCHHHHH
Confidence 1 011 111 124567765432211 211 113579999999994432 121
Q ss_pred HHHHHHH---HcCCcceEEEeeeccCCCcceEEEEe-C----Cee-EEEEeccCChhhhhhccccccccEEEEEeEEEeH
Q 012172 231 KILNHLI---QNKNEYCMEVTPKTLADVKGGTLISY-E----GKV-QLLEIAQVPDEHVNEFKSIEKFKIFNTNNLWVNL 301 (469)
Q Consensus 231 ~~Lg~~~---~~~~~~~~~v~~k~~~~~~~G~iv~~-~----g~~-~ivEy~~~~~e~~~~~~~~~~~~~~Nt~~~~~~l 301 (469)
..+..+. ..+..+++. +..+.++.+||.+... + +++ .++|..+.+ ....+-. .. .+.|+|+|+|+.
T Consensus 120 ~~l~~~~~~~~~~~~vt~~-i~p~~~~t~yG~I~~~~~~~~~~~V~~f~EKp~~~--~a~~~~~-~g-~~~n~Giy~f~~ 194 (337)
T 2cu2_A 120 EALATMLEAAEEGFVVALG-LRPTRPETEYGYIRLGPREGAWYRGEGFVEKPSYA--EALEYIR-KG-YVWNGGVFAFAP 194 (337)
T ss_dssp HHHHHHHHHCCTTCEEEEE-ECCSSCCSSSCEEEEEEEETTEEEEEEEECCCCHH--HHHHHHH-TT-CEEEEEEEEECH
T ss_pred HHHHHHHHHHHcCCeEEEe-eccCCCCCCceEEEECCcccccCeEEEEEeCCChH--HHHHHhh-cC-CEEEEEEEEEeH
Confidence 1232222 123322333 3344566789988653 2 444 355533221 1111111 12 468999999999
Q ss_pred HHHHHHHHh
Q 012172 302 KAIKRLVEA 310 (469)
Q Consensus 302 ~~L~~~l~~ 310 (469)
+.+.+.+++
T Consensus 195 ~~ll~~l~~ 203 (337)
T 2cu2_A 195 ATMAELFRR 203 (337)
T ss_dssp HHHHHHHHH
T ss_pred HHHHHHHHH
Confidence 988666654
|
| >2xwl_A 2-C-methyl-D-erythritol 4-phosphate cytidylyltran; transferase, MEP pathway; HET: CTP; 1.49A {Mycobacterium smegmatis} PDB: 2xwm_A* | Back alignment and structure |
|---|
Probab=98.88 E-value=3.1e-08 Score=92.87 Aligned_cols=43 Identities=16% Similarity=0.309 Sum_probs=39.5
Q ss_pred ceeEEEEcCCCCCcCCCCCCccccccCCCCchHHHHHHHHHHhh
Q 012172 79 KLVVLKLNGGLGTTMGCTGPKSVIEVRNGLTFLDLIVIQIENLN 122 (469)
Q Consensus 79 k~avviLAGG~GTRmg~~~PK~l~~v~~gks~L~~~~~~i~~l~ 122 (469)
++.+||||||.||||+...||.++++ .|+||+++.++++....
T Consensus 2 ~~~~vIlA~G~g~R~~~~~~K~l~~~-~g~pli~~~l~~l~~~~ 44 (223)
T 2xwl_A 2 ATVAVVPAAGSGERLRAGRPKAFVTL-GGTPLLEHALSGLRASG 44 (223)
T ss_dssp CEEEEEECCCCCGGGTSSSCGGGSEE-TTEEHHHHHHHHHHHHS
T ss_pred ceEEEEECCccCcccCCCCCCeeeEE-CCeEHHHHHHHHHhcCC
Confidence 57889999999999997789999999 89999999999998764
|
| >2xme_A CTP-inositol-1-phosphate cytidylyltransferase; CDP-inositol, DI-MYO-inositol phosphate; 1.89A {Archaeoglobus fulgidus} PDB: 2xmh_A* | Back alignment and structure |
|---|
Probab=98.87 E-value=4.5e-08 Score=92.83 Aligned_cols=211 Identities=12% Similarity=0.177 Sum_probs=108.8
Q ss_pred ccceeEEEEcCCCCCcCCCCCCccccccCCCCchHHHHHHHHHHhhhhcCCcccEEEecCCCChHHHHHHHHHhcCCCCc
Q 012172 77 LDKLVVLKLNGGLGTTMGCTGPKSVIEVRNGLTFLDLIVIQIENLNAKYGCNVPLLLMNSFNTHDDTSKIIEKYSKSNVE 156 (469)
Q Consensus 77 l~k~avviLAGG~GTRmg~~~PK~l~~v~~gks~L~~~~~~i~~l~~~~~~~iplviMtS~~t~e~t~~~~~~~~g~~~~ 156 (469)
..++.+||||||.|||||.. ||.++++ .|+|+++++++++... -. .+++.| . .++.+.+++.+..+ ..
T Consensus 16 m~~~~~iIlA~G~g~R~~~~-~K~l~~i-~g~pli~~~l~~l~~~-~~-----~i~vv~-~-~~~~~~~~~~~~~~--~~ 83 (232)
T 2xme_A 16 IKLMKAVILAAGLGTRLGGV-PKPLVRV-GGCEIILRTMKLLSPH-VS-----EFIIVA-S-RYADDIDAFLKDKG--FN 83 (232)
T ss_dssp CCCEEEEEEECC------CC-CGGGCEE-TTEEHHHHHHHHHGGG-EE-----EEEEEE-S-TTHHHHHHHHTTSC--CC
T ss_pred cccceEEEECCcCcCcCCCC-CcEEeEE-CCEEHHHHHHHHHHHh-CC-----EEEEEe-C-ChHHHHHHHHHhcC--Cc
Confidence 44688999999999999855 9999999 9999999999998765 21 344444 3 45666666533211 13
Q ss_pred eEEEEecCcceecCCCCcccCCCCCCCCcccccCCCcccchhccccchHHHHHHcCCcEEEEEeCccccccccHHHHHHH
Q 012172 157 IHTFNQSQYPRLCADDFVPLPCKGKTDKDGWYPPGHGDVFPSLMNSGKLDALISQGKEYVFAANSDNLGAIVDLKILNHL 236 (469)
Q Consensus 157 i~~f~Q~~~P~l~~~~~~~~~~~~~~~~~~~~P~GhGd~~~~L~~sg~L~~l~~~G~~~v~v~n~DNL~~~~dp~~Lg~~ 236 (469)
+.++.|... ..|.++.+..... .+ + +.++|.++|+.. ++.++..+
T Consensus 84 ~~~v~~~~~-----------------------~~g~~~~i~~a~~-----~~---~-~~~lv~~~D~p~---~~~~~~~l 128 (232)
T 2xme_A 84 YKIVRHDRP-----------------------EKGNGYSLLVAKN-----HV---E-DRFILTMGDHVY---SQQFIEKA 128 (232)
T ss_dssp EEEEECSCG-----------------------GGCHHHHHHTTGG-----GC---C-SSEEEEETTEEE---CHHHHHHH
T ss_pred EEEEECCCC-----------------------CCCcHHHHHHHHH-----HC---C-CCEEEEcCCccc---CHHHHHHH
Confidence 444433210 1344443322111 11 1 467789999952 45556655
Q ss_pred HHcCCcceEEEeeec---cCCCcceEEEEeCCeeE-EEEeccCChhhhhhccccccccEEEEEeEEEeHHHHHHHHHhcc
Q 012172 237 IQNKNEYCMEVTPKT---LADVKGGTLISYEGKVQ-LLEIAQVPDEHVNEFKSIEKFKIFNTNNLWVNLKAIKRLVEADA 312 (469)
Q Consensus 237 ~~~~~~~~~~v~~k~---~~~~~~G~iv~~~g~~~-ivEy~~~~~e~~~~~~~~~~~~~~Nt~~~~~~l~~L~~~l~~~~ 312 (469)
++.. . . ++... .+...++.+...+|++. +.|. + ......|+|.++++.+.+.. +.+
T Consensus 129 ~~~~-~--~-~~~~~~~~~~~~~~~~v~~~~g~v~~~~~~---~----------~~~~~~~~g~~~~~~~~~~~-l~~-- 188 (232)
T 2xme_A 129 VRGE-G--V-IADREPRFVDIGEATKIRVEDGRVAKIGKD---L----------REFDCVDTGFFVLDDSIFEH-AEK-- 188 (232)
T ss_dssp TTCC-E--E-EEESSCSSSCTTTSCEEEEETTEEEEEETT---C----------SSCSEEEEEEEEECTTHHHH-HGG--
T ss_pred HhCC-C--c-EEEccccccCCCcceEEEEcCCEEEEeecC---C----------CCcceEEEEEEEECHHHHHH-HHH--
Confidence 5432 1 2 22211 12344566655677653 3321 1 11246799999999887763 332
Q ss_pred cccccccCCCcCCCcceehhHHHhhhHhhhcccceeEeecCccccccCCchhHHHHHH
Q 012172 313 LKMEIIPNPKEVDGIKVLQLETAAGAAIRFFDHAIGCNVHRSRFLPVKATSDLLLVQS 370 (469)
Q Consensus 313 ~~lp~~~n~K~~~g~~~iqle~~~~d~~~~~~~~~~v~v~r~eF~pVKn~~dL~~~~~ 370 (469)
... .++.. +..++ +.. ++.++.++...|.-|++.+|+..+++
T Consensus 189 -----~~~----~g~~~--l~~ll----~~~-~v~~~~~~~~~~~dI~tpeDl~~a~~ 230 (232)
T 2xme_A 189 -----LRD----REEIP--LSEIV----KLA-RLPVTYVDGELWMDVDTKEDVRRANR 230 (232)
T ss_dssp -----GTT----SSCCC--HHHHH----HHH-TCBEEECCSCCEEEEECC--------
T ss_pred -----HHh----cChhH--HHHHH----HcC-CEEEEEECCCCEEeCCCHHHHHHHHh
Confidence 111 12222 22322 221 34455666557899999999887654
|
| >3rsb_A Adenosylcobinamide-phosphate guanylyltransferase; pyrophosphorylase binding motif, pyrophosphorylase; HET: GTP; 2.80A {Methanocaldococcus jannaschii} | Back alignment and structure |
|---|
Probab=98.77 E-value=3.2e-08 Score=91.26 Aligned_cols=61 Identities=25% Similarity=0.360 Sum_probs=46.8
Q ss_pred eEEEEcCCCCCcCCCCCCccccccCCCCchHHHHHHHHHHhhhhcCCcccEEEecCCCChHHHHHHHHH
Q 012172 81 VVLKLNGGLGTTMGCTGPKSVIEVRNGLTFLDLIVIQIENLNAKYGCNVPLLLMNSFNTHDDTSKIIEK 149 (469)
Q Consensus 81 avviLAGG~GTRmg~~~PK~l~~v~~gks~L~~~~~~i~~l~~~~~~~iplviMtS~~t~e~t~~~~~~ 149 (469)
.+||||||.|||||. .||.++++ .|+||++|.++++....- -.+++.|++ .++.+.+++++
T Consensus 2 ~aiIlA~G~s~R~~~-~~K~l~~~-~g~pli~~~l~~l~~~~~-----~~v~vv~~~-~~~~i~~~~~~ 62 (196)
T 3rsb_A 2 DALIMAGGKGTRMGG-VEKPLIKL-CGRCLIDYVVSPLLKSKV-----NNIFIATSP-NTPKTKEYINS 62 (196)
T ss_dssp EEEEEC----CGGGG-SCGGGCEE-TTEEHHHHHHHHHHSSSC-----CCEEEECCT-TCHHHHHHHHH
T ss_pred EEEEECCCCCCcCCC-CCccEEEE-CCEEHHHHHHHHHHHCCC-----CEEEEEeCC-ChHHHHHHHHh
Confidence 578999999999997 89999999 999999999999987641 245666666 46788888876
|
| >2vsh_A TARI, 2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase; nucleotidyltransferase; HET: 1PE PG4 P6G; 2.00A {Streptococcus pneumoniae} PDB: 2vsi_A* | Back alignment and structure |
|---|
Probab=98.76 E-value=1.7e-07 Score=88.49 Aligned_cols=66 Identities=20% Similarity=0.234 Sum_probs=40.8
Q ss_pred eeEEEEcCCCCCcCCC-CCCccccccCCCCchHHHHHHHHHHhhhhcCCcccEEEecCCCChHHHHHHHHHh
Q 012172 80 LVVLKLNGGLGTTMGC-TGPKSVIEVRNGLTFLDLIVIQIENLNAKYGCNVPLLLMNSFNTHDDTSKIIEKY 150 (469)
Q Consensus 80 ~avviLAGG~GTRmg~-~~PK~l~~v~~gks~L~~~~~~i~~l~~~~~~~iplviMtS~~t~e~t~~~~~~~ 150 (469)
+.+||||||.|||||. +.||.++++ .|+||+++.++++.+... --.+++.|++...+.+.++++++
T Consensus 3 ~~~iIlA~G~g~R~~~~~~~K~l~~i-~g~pli~~~l~~l~~~~~----~~~i~vv~~~~~~~~~~~~~~~~ 69 (236)
T 2vsh_A 3 IYAGILAGGTGTRMGISNLPKQFLEL-GDRPILIHTIEKFVLEPS----IEKIVVGVHGDWVSHAEDLVDKY 69 (236)
T ss_dssp EEEEEEEC-----------CGGGSEE-TTEEHHHHHHHHHHTCTT----CCCEEEEECGGGHHHHHHHHHHH
T ss_pred eEEEEeCCccccccCCCCCCCeeeee-CCccHHHHHHHHHHcCCC----CCeEEEEeCHHHHHHHHHHHHhc
Confidence 5689999999999996 679999999 899999999999887531 01455555553335677777653
|
| >1vgw_A 4-diphosphocytidyl-2C-methyl-D-erythritol synthas; structural genomics, transferase; 2.35A {Neisseria gonorrhoeae} SCOP: c.68.1.13 PDB: 1vgz_A | Back alignment and structure |
|---|
Probab=98.74 E-value=6.3e-07 Score=84.43 Aligned_cols=65 Identities=22% Similarity=0.282 Sum_probs=40.7
Q ss_pred cceeEEEEcCCCCCcCCCCCCccccccCCCCchHHHHHHHHHHhhhhcCCcccEEEecCCCChHHHHHHHHH
Q 012172 78 DKLVVLKLNGGLGTTMGCTGPKSVIEVRNGLTFLDLIVIQIENLNAKYGCNVPLLLMNSFNTHDDTSKIIEK 149 (469)
Q Consensus 78 ~k~avviLAGG~GTRmg~~~PK~l~~v~~gks~L~~~~~~i~~l~~~~~~~iplviMtS~~t~e~t~~~~~~ 149 (469)
.++.+||||||.|||||.+.||.++++ .|+||+++.++++..... --.+++.|++ .++.+.+ +.+
T Consensus 5 ~~~~aiIlA~G~g~R~~~~~~K~l~~~-~gkpli~~~l~~l~~~~~----~~~ivvv~~~-~~~~~~~-~~~ 69 (231)
T 1vgw_A 5 RKNIALIPAAGIGVRFGADKPKQYVEI-GSKTVLEHVLGIFERHEA----VDLTVVVVSP-EDTFADK-VQT 69 (231)
T ss_dssp CCEEEEEECC----------CCSCCEE-TTEEHHHHHHHHHHTCTT----CCEEEEECCT-TCSTHHH-HHH
T ss_pred CceEEEEEcccccccCCCCCCceEeEE-CCeEHHHHHHHHHHcCCC----CCeEEEEECc-cHHHHHH-HHh
Confidence 367899999999999998789999999 899999999999987531 0145555555 3455666 554
|
| >2waw_A MOBA relate protein; unknown function; HET: PGE; 1.60A {Mycobacterium SP} | Back alignment and structure |
|---|
Probab=98.63 E-value=1.7e-07 Score=85.92 Aligned_cols=60 Identities=15% Similarity=0.240 Sum_probs=46.5
Q ss_pred ceeEEEEcCCCCCcCCCCCCccccccCCCCchHHHHHHHHHHhhhhcCCcccEEEecCCCChHHHHHHH
Q 012172 79 KLVVLKLNGGLGTTMGCTGPKSVIEVRNGLTFLDLIVIQIENLNAKYGCNVPLLLMNSFNTHDDTSKII 147 (469)
Q Consensus 79 k~avviLAGG~GTRmg~~~PK~l~~v~~gks~L~~~~~~i~~l~~~~~~~iplviMtS~~t~e~t~~~~ 147 (469)
++.+||||||.||||| .||.++++ .|+|++++.++++....- -.+++.|++ ..+.+.+++
T Consensus 5 ~~~~iIlA~G~~~R~g--~~K~l~~~-~g~pli~~~l~~l~~~~~-----~~i~vv~~~-~~~~~~~~~ 64 (199)
T 2waw_A 5 RVTGVVLAAGYSRRLG--TPKQLLPL-GDTTLLGATLAMARRCPF-----DQLIVTLGG-AADEVLEKV 64 (199)
T ss_dssp CEEEEEEESSCCTTTT--SCGGGCEE-TTEEHHHHHHHHHHTSSC-----SEEEEEECT-THHHHHHHS
T ss_pred ceEEEEECCCCCCCCC--CCEEeCEe-CccCHHHHHHHHHHhCCC-----CcEEEEeCC-CHHHHHHHh
Confidence 5789999999999998 79999999 999999999999987631 145555554 445555444
|
| >2dpw_A Hypothetical protein TTHA0179; transferase, structural genomics, NPPSFA, national project O structural and functional analyses; 2.90A {Thermus thermophilus} SCOP: c.68.1.19 | Back alignment and structure |
|---|
Probab=98.50 E-value=3.5e-07 Score=86.96 Aligned_cols=42 Identities=17% Similarity=0.395 Sum_probs=35.5
Q ss_pred ceeEEEEcCCC---CCcCCCCCCccccccCCCCchHHHHHHHHHHhh
Q 012172 79 KLVVLKLNGGL---GTTMGCTGPKSVIEVRNGLTFLDLIVIQIENLN 122 (469)
Q Consensus 79 k~avviLAGG~---GTRmg~~~PK~l~~v~~gks~L~~~~~~i~~l~ 122 (469)
++.+||||||+ |+||| ..||.|+++ .|+||++++++++....
T Consensus 2 ~~~~vIlAaG~tRl~~r~~-~~~K~l~~i-~g~pll~~~l~~l~~~~ 46 (232)
T 2dpw_A 2 RPSAIVLAGGKEAWAERFG-VGSKALVPY-RGRPMVEWVLEALYAAG 46 (232)
T ss_dssp CCEEEEECCCBCSGGGTTT-CSBGGGSEE-TTEETHHHHHHHHHHTT
T ss_pred ceeEEEECCCCCccccccC-CCCceeeEE-CCEEHHHHHHHHHHhcC
Confidence 46789999999 55554 369999999 99999999999998764
|
| >2wee_A MOBA-related protein; unknown function; 1.65A {Mycobacterium tuberculosis H37RV} PDB: 2we9_A 2yes_A | Back alignment and structure |
|---|
Probab=98.48 E-value=4.5e-07 Score=83.09 Aligned_cols=60 Identities=15% Similarity=0.173 Sum_probs=46.4
Q ss_pred ceeEEEEcCCCCCcCCCCCCccccccCCCCchHHHHHHHHHHhhhhcCCcccEEEecCCCChHHHHHHH
Q 012172 79 KLVVLKLNGGLGTTMGCTGPKSVIEVRNGLTFLDLIVIQIENLNAKYGCNVPLLLMNSFNTHDDTSKII 147 (469)
Q Consensus 79 k~avviLAGG~GTRmg~~~PK~l~~v~~gks~L~~~~~~i~~l~~~~~~~iplviMtS~~t~e~t~~~~ 147 (469)
++.+||||||.||||| .||.++++ .|+|++++.++++....- -.+++.|++ ..+.+.+++
T Consensus 5 ~~~~iIlA~G~~~R~g--~~K~l~~~-~g~pll~~~l~~l~~~~~-----~~i~vv~~~-~~~~~~~~~ 64 (197)
T 2wee_A 5 QITGVVLAAGRSNRLG--TPKQLLPY-RDTTVLGATLDVARQAGF-----DQLILTLGG-AASAVRAAM 64 (197)
T ss_dssp EEEEEEEECCCCTTTS--SCGGGSEE-TTEEHHHHHHHHHHHTTC-----SEEEEEECT-THHHHHHHS
T ss_pred ceEEEEECCCCcccCC--CCeEcCee-CCccHHHHHHHHHHhcCC-----CcEEEEeCC-CHHHHHHHh
Confidence 5789999999999997 79999999 999999999999987641 144555555 445555444
|
| >3d5n_A Q97W15_sulso; NESG, SSR125, structural genomics, PSI-2, protein structure initiative, northeast structural genomics consortium; 2.80A {Sulfolobus solfataricus} | Back alignment and structure |
|---|
Probab=98.40 E-value=3.7e-07 Score=84.69 Aligned_cols=40 Identities=18% Similarity=0.282 Sum_probs=36.2
Q ss_pred ceeEEEEcCCCCCcCCCCCCccccccCCCCchHHHHHHHHHHh
Q 012172 79 KLVVLKLNGGLGTTMGCTGPKSVIEVRNGLTFLDLIVIQIENL 121 (469)
Q Consensus 79 k~avviLAGG~GTRmg~~~PK~l~~v~~gks~L~~~~~~i~~l 121 (469)
++.+||||||.|||||. ||.++++ .|+||++++++++...
T Consensus 2 ~~~~iIlAgG~g~Rmg~--~K~l~~i-~g~pll~~~l~~l~~~ 41 (197)
T 3d5n_A 2 NIGVIILAAGEGKRFGG--DKLLAKI-DNTPIIMRTIRIYGDL 41 (197)
T ss_dssp CEEEEEECSCCTTCCCS--SGGGSBS-SSSBHHHHHHHHTTTS
T ss_pred ceEEEEECCcCcccCCC--CeeeCEe-CceEHHHHHHHHHHhC
Confidence 46789999999999985 9999999 9999999999988654
|
| >2yc3_A 2-C-methyl-D-erythritol 4-phosphate cytidylyltran chloroplastic; transferase, non-mevalonate-pathway, herbicide, allosteric P; HET: MW5; 1.40A {Arabidopsis thaliana} PDB: 2yc5_A* 1w77_A* 2ycm_A* | Back alignment and structure |
|---|
Probab=98.28 E-value=5.3e-07 Score=84.87 Aligned_cols=42 Identities=24% Similarity=0.349 Sum_probs=32.8
Q ss_pred ceeEEEEcCCCCCcCCCCCCccccccCCCCchHHHHHHHHHHh
Q 012172 79 KLVVLKLNGGLGTTMGCTGPKSVIEVRNGLTFLDLIVIQIENL 121 (469)
Q Consensus 79 k~avviLAGG~GTRmg~~~PK~l~~v~~gks~L~~~~~~i~~l 121 (469)
++.+||||||.|||||++.||.++++ .|+|+++|.++++.+.
T Consensus 4 ~~~aiIlAaG~g~R~~~~~~K~l~~i-~g~pli~~~l~~l~~~ 45 (228)
T 2yc3_A 4 SVSVILLAGGQGKRMKMSMPKQYIPL-LGQPIALYSFFTFSRM 45 (228)
T ss_dssp CEEEEEECCCCC-------CGGGSEE-TTEEHHHHHHHHHHHC
T ss_pred ceEEEEECCccccccCCCCCccEeEE-CCEEHHHHHHHHHHcC
Confidence 57899999999999998889999999 9999999999999876
|
| >1e5k_A Molybdopterin-guanine dinucleotide biosynthesis protein A; molybdopterin nucleotidyl-transferase,; HET: CIT; 1.35A {Escherichia coli} SCOP: c.68.1.8 PDB: 1h4e_A* 1hjl_A* 1hjj_A* 1h4c_A* 1h4d_A* 1fr9_A 1frw_A* | Back alignment and structure |
|---|
Probab=98.27 E-value=3.7e-06 Score=78.26 Aligned_cols=41 Identities=22% Similarity=0.353 Sum_probs=37.4
Q ss_pred cceeEEEEcCCCCCcCCCCCCccccccCCCCchHHHHHHHHHH
Q 012172 78 DKLVVLKLNGGLGTTMGCTGPKSVIEVRNGLTFLDLIVIQIEN 120 (469)
Q Consensus 78 ~k~avviLAGG~GTRmg~~~PK~l~~v~~gks~L~~~~~~i~~ 120 (469)
.++.+||||||.||||| ..||.++++ .|+|++++.++++..
T Consensus 5 m~~~~iILAgG~s~Rmg-~~~K~ll~i-~G~pli~~~l~~l~~ 45 (201)
T 1e5k_A 5 TTITGVVLAGGKARRMG-GVDKGLLEL-NGKPLWQHVADALMT 45 (201)
T ss_dssp CSEEEEEECCCCCSSSC-SSCGGGSEE-TTEEHHHHHHHHHHH
T ss_pred CcceEEEEcCCCCCcCC-CCCCceeeE-CceeHHHHHHHHHHh
Confidence 36889999999999999 579999999 999999999999874
|
| >3ngw_A Molybdopterin-guanine dinucleotide biosynthesis P (MOBA); alpha-beta protein, structural genomics, PSI-2, protein STRU initiative; 2.31A {Archaeoglobus fulgidus} | Back alignment and structure |
|---|
Probab=98.24 E-value=3.9e-06 Score=78.83 Aligned_cols=39 Identities=21% Similarity=0.422 Sum_probs=35.5
Q ss_pred eeEEEEcCCCCCcCCCCCCccccccCCCCchHHHHHHHHHHh
Q 012172 80 LVVLKLNGGLGTTMGCTGPKSVIEVRNGLTFLDLIVIQIENL 121 (469)
Q Consensus 80 ~avviLAGG~GTRmg~~~PK~l~~v~~gks~L~~~~~~i~~l 121 (469)
+.+||||||+||||| .||.++++ .|+||++++++++...
T Consensus 1 m~aiILAgG~s~Rmg--~~K~ll~~-~G~pli~~~~~~l~~~ 39 (208)
T 3ngw_A 1 MKVAVLVGGVGRRIG--MEKTEVML-CGKKLIEWVLEKYSPF 39 (208)
T ss_dssp CEEEEECCCCCTTTT--SCGGGCEE-TTEEHHHHHHHHHTTS
T ss_pred CEEEEECCCchhhCC--CCCcccEE-CCeeHHHHHHHHhcCC
Confidence 368999999999999 79999999 9999999999998654
|
| >1vpa_A 2-C-methyl-D-erythritol 4-phosphate cytidylyltran; TM1393, JCSG, joint center for structural GENO PSI, protein structure initiative; HET: CTP; 2.67A {Thermotoga maritima} SCOP: c.68.1.13 | Back alignment and structure |
|---|
Probab=98.21 E-value=4.8e-07 Score=85.55 Aligned_cols=43 Identities=21% Similarity=0.319 Sum_probs=39.5
Q ss_pred ceeEEEEcCCCCCcCCCCCCccccccCCCCchHHHHHHHHHHhh
Q 012172 79 KLVVLKLNGGLGTTMGCTGPKSVIEVRNGLTFLDLIVIQIENLN 122 (469)
Q Consensus 79 k~avviLAGG~GTRmg~~~PK~l~~v~~gks~L~~~~~~i~~l~ 122 (469)
.+.+||||||.|||||++.||.|+++ .|+||+++.++++....
T Consensus 13 ~~~aiILAaG~s~Rm~~~~~K~l~~i-~Gkpli~~~i~~l~~~~ 55 (234)
T 1vpa_A 13 MNVAILLAAGKGERMSENVPKQFLEI-EGRMLFEYPLSTFLKSE 55 (234)
T ss_dssp CEEEEEEECCCCGGGCCSSCGGGCEE-TTEETTHHHHHHHHHCT
T ss_pred cCeEEEEcCcchhhcCCCCCceEEEE-CCeEHHHHHHHHHHcCC
Confidence 57889999999999998889999999 99999999999998753
|
| >1i52_A 4-diphosphocytidyl-2-C-methylerythritol synthase; cytidylyltransferase, deoxyxylulose-5-phosphate pathway (DXP isoprenoid biosynthesys, MEP; HET: CTP; 1.50A {Escherichia coli} SCOP: c.68.1.13 PDB: 1ini_A* 1inj_A 1vgt_A 1vgu_A 3n9w_A 1h3m_A | Back alignment and structure |
|---|
Probab=98.13 E-value=1.1e-06 Score=83.32 Aligned_cols=62 Identities=15% Similarity=0.149 Sum_probs=47.2
Q ss_pred cceeEEEEcCCCCCcCCCCCCccccccCCCCchHHHHHHHHHHhhhhcCCcccEEEecCCCChHHHHH
Q 012172 78 DKLVVLKLNGGLGTTMGCTGPKSVIEVRNGLTFLDLIVIQIENLNAKYGCNVPLLLMNSFNTHDDTSK 145 (469)
Q Consensus 78 ~k~avviLAGG~GTRmg~~~PK~l~~v~~gks~L~~~~~~i~~l~~~~~~~iplviMtS~~t~e~t~~ 145 (469)
.++.+||||||.|||||.+.||.++++ .|+||+++.++++..... --.+++.|++ .++.+.+
T Consensus 6 ~~~~~iIlA~G~g~R~~~~~~K~l~~i-~g~pll~~~i~~l~~~~~----~~~ivvv~~~-~~~~~~~ 67 (236)
T 1i52_A 6 LDVCAVVPAAGFGRRMQTECPKQYLSI-GNQTILEHSVHALLAHPR----VKRVVIAISP-GDSRFAQ 67 (236)
T ss_dssp CCEEEEEEECCCCGGGCCSSCGGGSEE-TTEEHHHHHHHHHHTSTT----EEEEEEEECT-TCCSGGG
T ss_pred CceeEEEECCcCccccCCCCCcceeeE-CCEEHHHHHHHHHHhCCC----CCeEEEEeCc-cHHHHHH
Confidence 467899999999999997789999999 999999999999987531 0144555554 3344433
|
| >2px7_A 2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase; TTHA0171, ISPD_THET8, ISPD, structural genomics PSI; 2.20A {Thermus thermophilus HB8} | Back alignment and structure |
|---|
Probab=97.93 E-value=4.8e-06 Score=79.32 Aligned_cols=38 Identities=29% Similarity=0.461 Sum_probs=28.6
Q ss_pred cceeEEEEcCCCCCcCCCCCCccccccCCCCchHHHHHHH
Q 012172 78 DKLVVLKLNGGLGTTMGCTGPKSVIEVRNGLTFLDLIVIQ 117 (469)
Q Consensus 78 ~k~avviLAGG~GTRmg~~~PK~l~~v~~gks~L~~~~~~ 117 (469)
.++.+||||||.|||||.+ ||.|+++ .|+||+++++++
T Consensus 24 M~~~aiILAgG~s~Rm~~~-~K~l~~i-~gkpli~~~l~~ 61 (236)
T 2px7_A 24 MEVSVLIPAAGNGLRLGRG-PKAFLQV-GGRTLLEWTLAA 61 (236)
T ss_dssp CCCEEEEECCC-------C-CGGGCBC-SSSBHHHHHHHH
T ss_pred CceEEEEEcCCCCccCCCC-CCeEEEE-CCEEHHHHHHHh
Confidence 3578999999999999977 9999999 999999999998
|
| >2e8b_A Probable molybdopterin-guanine dinucleotide biosy protein A; putative protein, molybdenum cofactor, structural G NPPSFA; 1.61A {Aquifex aeolicus} | Back alignment and structure |
|---|
Probab=97.90 E-value=3.1e-06 Score=78.62 Aligned_cols=40 Identities=18% Similarity=0.297 Sum_probs=37.2
Q ss_pred ceeEEEEcCCCCCcCCCCCCccccccCCCCchHHHHHHHHHHh
Q 012172 79 KLVVLKLNGGLGTTMGCTGPKSVIEVRNGLTFLDLIVIQIENL 121 (469)
Q Consensus 79 k~avviLAGG~GTRmg~~~PK~l~~v~~gks~L~~~~~~i~~l 121 (469)
++.+||||||.||||| .||.++++ .|+|+++++++++...
T Consensus 14 ~~~~iILA~G~g~Rmg--~~K~ll~i-~g~pll~~~l~~l~~~ 53 (201)
T 2e8b_A 14 VNTCYVLAGGKSKRFG--EDKLLYEI-KGKKVIERVYETAKSV 53 (201)
T ss_dssp CCEEEEEEESSCCCCS--TTHHHHHH-HHHHHHHHHHHHHHTT
T ss_pred CceEEEECCCCCccCC--CCcccceE-CceEHHHHHHHHHHHh
Confidence 5789999999999999 79999999 9999999999998775
|
| >1w55_A ISPD/ISPF bifunctional enzyme; biosynthetic pathway, isoprenoids, nonmevalonate, transferase; HET: C GPP; 2.3A {Campylobacter jejuni} SCOP: c.68.1.13 d.79.5.1 PDB: 1w57_A* | Back alignment and structure |
|---|
Probab=97.78 E-value=1.3e-05 Score=81.95 Aligned_cols=42 Identities=10% Similarity=0.167 Sum_probs=38.9
Q ss_pred ceeEEEEcCCCCCcCCCCCCccccccCCCCchHHHHHHHHHHh
Q 012172 79 KLVVLKLNGGLGTTMGCTGPKSVIEVRNGLTFLDLIVIQIENL 121 (469)
Q Consensus 79 k~avviLAGG~GTRmg~~~PK~l~~v~~gks~L~~~~~~i~~l 121 (469)
++.+||||||.|||||.+.||.++++ .|+|+++|.++++.+.
T Consensus 3 ki~aIILAaG~ssRmg~~~pK~ll~l-~GkPLi~~~l~~l~~~ 44 (371)
T 1w55_A 3 EMSLIMLAAGNSTRFNTKVKKQFLRL-GNDPLWLYATKNLSSF 44 (371)
T ss_dssp CEEEEEECCSCCTTTCSSSCGGGCEE-BTEEHHHHHHHHHHTT
T ss_pred ccEEEEECCCCCccCCCCCCcceEEE-CCeEHHHHHHHHHHcc
Confidence 57899999999999998889999999 9999999999998764
|
| >3ixc_A Hexapeptide transferase family protein; niaid, ssgcid, seattle structural genomics center for infect disease, GRAM-negative bacteria; 1.61A {Anaplasma phagocytophilum} | Back alignment and structure |
|---|
Probab=95.40 E-value=0.016 Score=52.92 Aligned_cols=38 Identities=11% Similarity=0.214 Sum_probs=19.4
Q ss_pred EECCCcEEeeeEEEE-------ecCCCceeeCCCCeeecceecCC
Q 012172 429 WFGANITLKGKVTIA-------AKSGEKLEIPDGAVLENKEINGP 466 (469)
Q Consensus 429 ~fg~~V~i~g~~~I~-------~~~~~~~~I~~~s~le~~~v~~~ 466 (469)
++|+++.|+.+|+|. ...|+.+.|.++++|.+++|+.+
T Consensus 74 ~IG~~~~I~~~~~I~~~~~~g~~~Ig~~~~Ig~~~~i~~~~Ig~~ 118 (191)
T 3ixc_A 74 EVGEGTNIQDNTVVHTDSMHGDTVIGKFVTIGHSCILHACTLGNN 118 (191)
T ss_dssp EECTTCEECTTCEECC----CCEEECTTCEECTTCEECSCEECTT
T ss_pred EECCCCEECCCCEEeecCCcCCeEECCCCEECCCCEEECCEECCC
Confidence 555555555555553 23444455555555555555444
|
| >3hjj_A Maltose O-acetyltransferase; LEFT-handed beta-helix, acyltransferase, struct genomics; 2.15A {Bacillus anthracis} SCOP: b.81.1.0 PDB: 3igj_A* | Back alignment and structure |
|---|
Probab=94.90 E-value=0.033 Score=50.85 Aligned_cols=34 Identities=29% Similarity=0.408 Sum_probs=17.2
Q ss_pred EeeEEECCCcEEeeeEEEE--ecCCCceeeCCCCee
Q 012172 425 TGDVWFGANITLKGKVTIA--AKSGEKLEIPDGAVL 458 (469)
Q Consensus 425 ~G~v~fg~~V~i~g~~~I~--~~~~~~~~I~~~s~l 458 (469)
.+.|++|++|.|+++|+|. ...|+.++|.++|++
T Consensus 132 ~~~v~IG~~v~IG~~~~I~~gv~IG~~~vIgagsvV 167 (190)
T 3hjj_A 132 GKPVKIGNNVWVGGGAIINPGVSIGDNAVIASGAVV 167 (190)
T ss_dssp ECCEEECTTCEECTTCEECTTCEECTTCEECTTCEE
T ss_pred cCCeEECCCCEECCCCEECCCCEECCCCEECCCCEE
Confidence 3445555555555555554 334444555555554
|
| >2pig_A Putative transferase; SCR6, NESG, YDCK, structural genomics, PSI-2, protein structure initiative, northeast structural genomics consortium; 2.38A {Salmonella paratyphi} PDB: 2f9c_A | Back alignment and structure |
|---|
Probab=94.44 E-value=0.012 Score=58.95 Aligned_cols=49 Identities=14% Similarity=0.212 Sum_probs=41.8
Q ss_pred CceEEEeeEEECCCcEEeeeEEEE-ecCCCceeeCCCCeeecceecCCCC
Q 012172 420 DSLKVTGDVWFGANITLKGKVTIA-AKSGEKLEIPDGAVLENKEINGPGD 468 (469)
Q Consensus 420 ~~l~v~G~v~fg~~V~i~g~~~I~-~~~~~~~~I~~~s~le~~~v~~~~~ 468 (469)
.++.|.|.+++|++++|+++|+|. +..++.+.|.++|+|++++|+++.+
T Consensus 76 ~~~~I~g~~~Ig~~~~Ig~~~~I~~~~Ig~~~~I~~~s~I~~s~I~~~~~ 125 (334)
T 2pig_A 76 GNARITQPCTLYNNVRIGDNVWIDRADISDGARISDNVTIQSSSVREECA 125 (334)
T ss_dssp TTCEEESSCEEESSCEECTTCEEESCEEESSCEECTTCEEESCEEESSEE
T ss_pred CCcEEeeeeeECCCcEECCCCEEEeEEEcCCCEEeCCcEEeccEEcCCeE
Confidence 688899999999999999999998 4477779999999999998877654
|
| >3r1w_A Carbonic anhydrase; beta-helix, lyase; 1.73A {Unidentified} | Back alignment and structure |
|---|
Probab=94.13 E-value=0.048 Score=49.19 Aligned_cols=47 Identities=19% Similarity=0.306 Sum_probs=24.4
Q ss_pred CceEEEee---EEECCCcEEeeeEEEEe-------------cCCCceeeCCCCeeecceecCC
Q 012172 420 DSLKVTGD---VWFGANITLKGKVTIAA-------------KSGEKLEIPDGAVLENKEINGP 466 (469)
Q Consensus 420 ~~l~v~G~---v~fg~~V~i~g~~~I~~-------------~~~~~~~I~~~s~le~~~v~~~ 466 (469)
.+++|.|+ +.+|++|.|+.+|+|.+ ..|+.+.|.++++|.+++|+.+
T Consensus 48 ~~~~i~~~~~~i~IG~~~~I~~~~~I~~~~~~~~~~~~~~~~Ig~~~~Ig~~~~i~~~~Ig~~ 110 (189)
T 3r1w_A 48 PLAVIRGDMHHIRIGARTSVQDGSVLHITHASDYNPGGYPLIIGDDVTIGHQAMLHGCTIGNR 110 (189)
T ss_dssp TTCEEEEEEEEEEECTTCEECTTCEEECBCCSSSSTTCBCEEECSSEEECTTCEEESCEECSS
T ss_pred CCCEEecCCCceEECCCCEECCCCEEecCCcccCCCCCCCeEECCCCEECCCCEEeCcEECCC
Confidence 34455533 36666666666666654 3444455555555555554443
|
| >1xhd_A Putative acetyltransferase/acyltransferase; structural genomics, protein structure initiative, medwest C structural genomics, MCSG; 1.90A {Bacillus cereus} SCOP: b.81.1.5 PDB: 3vnp_A 2eg0_A | Back alignment and structure |
|---|
Probab=94.07 E-value=0.056 Score=48.29 Aligned_cols=48 Identities=13% Similarity=0.256 Sum_probs=31.0
Q ss_pred CceEEEee---EEECCCcEEeeeEEEEe------cCCCceeeCCCCeeecceecCCC
Q 012172 420 DSLKVTGD---VWFGANITLKGKVTIAA------KSGEKLEIPDGAVLENKEINGPG 467 (469)
Q Consensus 420 ~~l~v~G~---v~fg~~V~i~g~~~I~~------~~~~~~~I~~~s~le~~~v~~~~ 467 (469)
..++|.++ +++|+++.|+.+|+|.+ ..|+.+.|.+++.|.+++|+.+.
T Consensus 41 ~~~~i~~~~~~v~IG~~~~I~~~~~I~~~~~~~~~Ig~~~~Ig~~~~i~~~~Ig~~~ 97 (173)
T 1xhd_A 41 FNTVIRGDVSPTIIGDRVNVQDQCTLHQSPQYPLILEDDVTVGHQVILHSCHIKKDA 97 (173)
T ss_dssp TTCEEEEEEEEEEECTTCEECTTCEEECCTTCCEEECTTCEECTTCEEESCEECTTC
T ss_pred CCcEEecCCCeEEECCCCEECCCCEEEeCCCCCeEECCCCEECCCCEEeCCEECCCC
Confidence 45566665 77788888877777762 34555666666666666666554
|
| >1xhd_A Putative acetyltransferase/acyltransferase; structural genomics, protein structure initiative, medwest C structural genomics, MCSG; 1.90A {Bacillus cereus} SCOP: b.81.1.5 PDB: 3vnp_A 2eg0_A | Back alignment and structure |
|---|
Probab=93.73 E-value=0.077 Score=47.37 Aligned_cols=32 Identities=13% Similarity=0.242 Sum_probs=16.1
Q ss_pred eEEECCCcEEeeeEEEEe-cCCCceeeCCCCee
Q 012172 427 DVWFGANITLKGKVTIAA-KSGEKLEIPDGAVL 458 (469)
Q Consensus 427 ~v~fg~~V~i~g~~~I~~-~~~~~~~I~~~s~l 458 (469)
++.+|+++.|+.++.|.. ..|+.+.|.++++|
T Consensus 73 ~~~Ig~~~~Ig~~~~i~~~~Ig~~~~Ig~~~~i 105 (173)
T 1xhd_A 73 PLILEDDVTVGHQVILHSCHIKKDALIGMGSII 105 (173)
T ss_dssp CEEECTTCEECTTCEEESCEECTTCEECTTCEE
T ss_pred CeEECCCCEECCCCEEeCCEECCCCEEcCCCEE
Confidence 455555555555555542 23444555555544
|
| >3ixc_A Hexapeptide transferase family protein; niaid, ssgcid, seattle structural genomics center for infect disease, GRAM-negative bacteria; 1.61A {Anaplasma phagocytophilum} | Back alignment and structure |
|---|
Probab=93.02 E-value=0.091 Score=47.81 Aligned_cols=21 Identities=24% Similarity=0.420 Sum_probs=8.7
Q ss_pred eEEEeeEEECCCcEEeeeEEE
Q 012172 422 LKVTGDVWFGANITLKGKVTI 442 (469)
Q Consensus 422 l~v~G~v~fg~~V~i~g~~~I 442 (469)
+.|.|++.+|+++.|..+|+|
T Consensus 46 ~~i~~~v~IG~~~~I~~~~~I 66 (191)
T 3ixc_A 46 ARIIGDVCIGKNASIWYGTVL 66 (191)
T ss_dssp CEEEEEEEECTTCEECTTCEE
T ss_pred CEEeCCcEECCCCEECCCCEE
Confidence 333444444444444444444
|
| >1v3w_A Ferripyochelin binding protein; beta-helix, carbonic anhydrase, structural genomics, riken S genomics/proteomics initiative, RSGI, lyase; 1.50A {Pyrococcus horikoshii} SCOP: b.81.1.5 PDB: 1v67_A 2fko_A | Back alignment and structure |
|---|
Probab=93.00 E-value=0.096 Score=46.81 Aligned_cols=38 Identities=18% Similarity=0.417 Sum_probs=17.9
Q ss_pred EEECCCcEEeeeEEEEe------cCCCceeeCCCCeeecceecC
Q 012172 428 VWFGANITLKGKVTIAA------KSGEKLEIPDGAVLENKEING 465 (469)
Q Consensus 428 v~fg~~V~i~g~~~I~~------~~~~~~~I~~~s~le~~~v~~ 465 (469)
+++|+++.|..+|+|.+ ..|+.+.|.+++.|.+++|+.
T Consensus 50 ~~IG~~~~I~~~~~I~~~~~~~~~Ig~~~~I~~~~~i~~~~Ig~ 93 (173)
T 1v3w_A 50 IYVGKYSNVQDNVSIHTSHGYPTEIGEYVTIGHNAMVHGAKVGN 93 (173)
T ss_dssp EEECTTCEECTTCEEECBTTBCEEECSSCEECTTCEEESCEECS
T ss_pred EEECCCCEECCCcEEEecCCCCeEECCCCEECCCCEECCCEECC
Confidence 55555555555555542 233334444444444444443
|
| >3tv0_A Dynactin subunit 6; LEFT-handed beta-helix, ARP11, cytosol, structural; 2.15A {Homo sapiens} | Back alignment and structure |
|---|
Probab=92.99 E-value=0.12 Score=47.13 Aligned_cols=25 Identities=28% Similarity=0.383 Sum_probs=19.0
Q ss_pred CceEEEeeEEECCCcEEeeeEEEEe
Q 012172 420 DSLKVTGDVWFGANITLKGKVTIAA 444 (469)
Q Consensus 420 ~~l~v~G~v~fg~~V~i~g~~~I~~ 444 (469)
.+++|.|+|++|+++.|..+|+|.+
T Consensus 23 ~~a~I~g~V~IG~~~~I~~~~~I~~ 47 (194)
T 3tv0_A 23 VESEIRGDVTIGPRTVIHPKARIIA 47 (194)
T ss_dssp TTSEEESSEEECTTCEECTTCEEEE
T ss_pred CCCEEeCCCEECCCCEECCCCEEcc
Confidence 5677777888888888877777764
|
| >3nz2_A Hexapeptide-repeat containing-acetyltransferase; structural genomics, center for structural genomics of infec diseases, csgid; HET: ACO; 2.35A {Vibrio cholerae o1 biovar eltor} SCOP: b.81.1.0 PDB: 3ect_A* | Back alignment and structure |
|---|
Probab=92.69 E-value=0.11 Score=47.70 Aligned_cols=36 Identities=14% Similarity=0.313 Sum_probs=20.8
Q ss_pred EEeeEEECCCcEEeeeEEEE--ecCCCceeeCCCCeee
Q 012172 424 VTGDVWFGANITLKGKVTIA--AKSGEKLEIPDGAVLE 459 (469)
Q Consensus 424 v~G~v~fg~~V~i~g~~~I~--~~~~~~~~I~~~s~le 459 (469)
+.+.|++|++|.|+++|+|. ...|+.++|.++|++.
T Consensus 129 ~~~~v~IG~~v~IG~~~~I~~gv~IG~~~vIgagsvV~ 166 (195)
T 3nz2_A 129 ICKPIVIEDDVWIGGNVVINQGVTIGARSVVAANSVVN 166 (195)
T ss_dssp EECCEEECTTCEECTTCEECTTCEECTTCEECTTCEEC
T ss_pred ecCCeEECCCCEEcCCCEECCCCEECCCCEECCCCEEc
Confidence 44455666666666666664 3455555566666553
|
| >3kwd_A Carbon dioxide concentrating mechanism protein; LEFT-handed beta helix, gamma carbonic anhydrase, disulfide dependent activity; 1.10A {Thermosynechococcus elongatus} PDB: 3kwe_A 3kwc_A | Back alignment and structure |
|---|
Probab=92.63 E-value=0.13 Score=47.47 Aligned_cols=47 Identities=15% Similarity=0.196 Sum_probs=34.5
Q ss_pred CceEEEeeEEECCCcEEeeeEEEE-ecCCCceeeCCCCeeecceecCC
Q 012172 420 DSLKVTGDVWFGANITLKGKVTIA-AKSGEKLEIPDGAVLENKEINGP 466 (469)
Q Consensus 420 ~~l~v~G~v~fg~~V~i~g~~~I~-~~~~~~~~I~~~s~le~~~v~~~ 466 (469)
..++|.+.+++|++|.|+.+++|. +..|+.+.|.++|++.+.+|+.+
T Consensus 122 ~~~~I~~~v~Ig~~v~IG~~a~I~~~~Ig~~~~Igags~V~~~~i~~~ 169 (213)
T 3kwd_A 122 HMALIHGPAYIGDGCFIGFRSTVFNARVGAGCVVMMHVLIQDVEIPPG 169 (213)
T ss_dssp TTCEEEEEEEECTTCEECTTCEEEEEEECTTCEECSSCEEESCEECTT
T ss_pred CCcEEcCCCEECCCCEECCCCEEeCcEECCCCEEcCCCEECCcEeCCC
Confidence 566777778888888888877777 44677788888888866555543
|
| >3r3r_A Ferripyochelin binding protein; structural genomics, csgid, center for structural genomics O infectious diseases, all beta protein; 1.20A {Salmonella enterica subsp} SCOP: b.81.1.0 PDB: 3tio_A 3tis_A | Back alignment and structure |
|---|
Probab=92.62 E-value=0.097 Score=47.12 Aligned_cols=14 Identities=14% Similarity=0.280 Sum_probs=6.8
Q ss_pred EECCCcEEeeeEEE
Q 012172 429 WFGANITLKGKVTI 442 (469)
Q Consensus 429 ~fg~~V~i~g~~~I 442 (469)
++|+++.|..+|+|
T Consensus 56 ~IG~~~~I~~~~~I 69 (187)
T 3r3r_A 56 AIGARTNIQDGSVL 69 (187)
T ss_dssp EECTTCEECTTCEE
T ss_pred EECCCCEECCCCEE
Confidence 44444444444444
|
| >3vbi_A ANTD, galactoside O-acetyltransferase; anthrose, acylated sugar, LEFT-handed beta helix, sugar N-AC transferase; HET: COA 0FX; 1.80A {Bacillus cereus} PDB: 3vbj_A* 3vbm_A* 3vbk_A* 3vbp_A* 3vbl_A* 3vbn_A* | Back alignment and structure |
|---|
Probab=92.49 E-value=0.14 Score=46.94 Aligned_cols=39 Identities=13% Similarity=0.167 Sum_probs=24.5
Q ss_pred CceEEEeeEEECCCcEEeeeEEEE-----ecCCCceeeCCCCee
Q 012172 420 DSLKVTGDVWFGANITLKGKVTIA-----AKSGEKLEIPDGAVL 458 (469)
Q Consensus 420 ~~l~v~G~v~fg~~V~i~g~~~I~-----~~~~~~~~I~~~s~l 458 (469)
..++|.|++++|++|.|..+|+|. ...|+.+.|.++++|
T Consensus 63 ~~~~I~~~v~IG~~~~I~~~~~I~~~~~~~~IG~~~~Ig~~~~I 106 (205)
T 3vbi_A 63 DFCILSGKVTIGSYSHIAAYTALYGGEVGIEMYDFANISSRTIV 106 (205)
T ss_dssp TTCEEEEEEEECSSEEECTTCEEEEEEEEEEECTTCEECTTCEE
T ss_pred CCCEEccceEECCCCEECCCeEEEcCCccEEECCCCEECCCcEE
Confidence 566667777777777777777774 234455555555555
|
| >3r3r_A Ferripyochelin binding protein; structural genomics, csgid, center for structural genomics O infectious diseases, all beta protein; 1.20A {Salmonella enterica subsp} SCOP: b.81.1.0 PDB: 3tio_A 3tis_A | Back alignment and structure |
|---|
Probab=92.20 E-value=0.12 Score=46.48 Aligned_cols=39 Identities=33% Similarity=0.462 Sum_probs=29.1
Q ss_pred CceEEEeeEEECCCcEEeeeEEEEe-----cCCCceeeCCCCee
Q 012172 420 DSLKVTGDVWFGANITLKGKVTIAA-----KSGEKLEIPDGAVL 458 (469)
Q Consensus 420 ~~l~v~G~v~fg~~V~i~g~~~I~~-----~~~~~~~I~~~s~l 458 (469)
..+.|.|++.+|+++.|..+++|.. ..|+.+.|.++++|
T Consensus 26 ~~~~i~~~v~IG~~~~I~~~~~i~~~~~~i~IG~~~~I~~~~~I 69 (187)
T 3r3r_A 26 TSSVVIGDVRLADDVGIWPLVVIRGDVNYVAIGARTNIQDGSVL 69 (187)
T ss_dssp TTCEEEEEEEECTTCEECTTCEEEEEEEEEEECTTCEECTTCEE
T ss_pred CCCEEECceEECCCCEECCCcEEEcCCccEEECCCCEECCCCEE
Confidence 4567778888888888888887764 55777777777777
|
| >3ftt_A Putative acetyltransferase sacol2570; galactoside O-acetyltransferase, enzyme, structural genomics, acyltransferase; 1.60A {Staphylococcus aureus subsp} PDB: 3v4e_A* 4dcl_A 4egg_A | Back alignment and structure |
|---|
Probab=92.20 E-value=0.27 Score=45.04 Aligned_cols=35 Identities=29% Similarity=0.473 Sum_probs=18.6
Q ss_pred EeeEEECCCcEEeeeEEEE--ecCCCceeeCCCCeee
Q 012172 425 TGDVWFGANITLKGKVTIA--AKSGEKLEIPDGAVLE 459 (469)
Q Consensus 425 ~G~v~fg~~V~i~g~~~I~--~~~~~~~~I~~~s~le 459 (469)
.+.|++|++|.|+++|+|. ...|+.++|.++|++.
T Consensus 128 ~~~v~IG~~v~IG~~~~I~~gv~IG~~~vIgagsvV~ 164 (199)
T 3ftt_A 128 AGPIHIGSNTWFGGHVAVLPGVTIGEGSVIGAGSVVT 164 (199)
T ss_dssp ECCEEECSSEEECTTCEECTTCEECTTCEECTTCEEC
T ss_pred cCCeEEcCCcEEcCCCEECCCCEECCCCEECCCCEEC
Confidence 4455555555555555554 3345555555555553
|
| >2p2o_A Maltose transacetylase; GK1921, GKA001001921.1, geobacillus kaustophilus structural genomics, PSI; 1.74A {Geobacillus kaustophilus} PDB: 2ic7_A | Back alignment and structure |
|---|
Probab=91.98 E-value=0.15 Score=46.49 Aligned_cols=35 Identities=29% Similarity=0.451 Sum_probs=21.1
Q ss_pred EeeEEECCCcEEeeeEEEE--ecCCCceeeCCCCeee
Q 012172 425 TGDVWFGANITLKGKVTIA--AKSGEKLEIPDGAVLE 459 (469)
Q Consensus 425 ~G~v~fg~~V~i~g~~~I~--~~~~~~~~I~~~s~le 459 (469)
.+++++|++|.|+++|+|. ...|+.+.|.++|++.
T Consensus 128 ~~~v~IGd~v~IG~~~~I~~gv~IG~~~vIgagsvV~ 164 (185)
T 2p2o_A 128 GKPVVIGHNVWIGGRAVINPGVTIGDNAVIASGAVVT 164 (185)
T ss_dssp ECCEEECSSCEECTTCEECTTCEECTTCEECTTCEEC
T ss_pred cCCeEEcCCeEECCCCEECCCCEECCCCEECCCCEEC
Confidence 4466666666666666665 3455556666666554
|
| >3kwd_A Carbon dioxide concentrating mechanism protein; LEFT-handed beta helix, gamma carbonic anhydrase, disulfide dependent activity; 1.10A {Thermosynechococcus elongatus} PDB: 3kwe_A 3kwc_A | Back alignment and structure |
|---|
Probab=91.79 E-value=0.19 Score=46.32 Aligned_cols=40 Identities=23% Similarity=0.308 Sum_probs=26.5
Q ss_pred EEECCCcEEeeeEEEE--ecCCCceeeCCCCeeecceecCCC
Q 012172 428 VWFGANITLKGKVTIA--AKSGEKLEIPDGAVLENKEINGPG 467 (469)
Q Consensus 428 v~fg~~V~i~g~~~I~--~~~~~~~~I~~~s~le~~~v~~~~ 467 (469)
+++|++|.|+.+|.|. ...|+.+.|.+++++.+++|+.+.
T Consensus 112 ~~IG~~v~Ig~~~~I~~~v~Ig~~v~IG~~a~I~~~~Ig~~~ 153 (213)
T 3kwd_A 112 VWIGDNVSITHMALIHGPAYIGDGCFIGFRSTVFNARVGAGC 153 (213)
T ss_dssp EEECTTCEECTTCEEEEEEEECTTCEECTTCEEEEEEECTTC
T ss_pred eEECCCcEECCCcEEcCCCEECCCCEECCCCEEeCcEECCCC
Confidence 5566666666655555 345667778888888777776654
|
| >2wlg_A Polysialic acid O-acetyltransferase; enzyme, LEFT-handed beta HEL; HET: SOP; 1.90A {Neisseria meningitidis serogroup Y} PDB: 2wld_A 2wle_A* 2wlf_A* 2wlc_A* | Back alignment and structure |
|---|
Probab=91.73 E-value=0.05 Score=50.52 Aligned_cols=15 Identities=7% Similarity=-0.024 Sum_probs=11.1
Q ss_pred cccccCCchhHHHHH
Q 012172 355 RFLPVKATSDLLLVQ 369 (469)
Q Consensus 355 eF~pVKn~~dL~~~~ 369 (469)
+..++||+-+|+.++
T Consensus 7 ~~~G~nn~i~l~~~~ 21 (215)
T 2wlg_A 7 SEQGINNTINISTTS 21 (215)
T ss_dssp EEESSSCEEEECTTC
T ss_pred EEeCCCCEEEecCCc
Confidence 567888888877665
|
| >3jqy_B NEUO, polysialic acid O-acetyltransferase; LEFT-handed beta-helix polysia; HET: PEG; 1.70A {Escherichia coli} | Back alignment and structure |
|---|
Probab=91.68 E-value=0.21 Score=47.53 Aligned_cols=24 Identities=21% Similarity=0.343 Sum_probs=14.1
Q ss_pred ceEEEe---eEEECCCcEEeeeEEEEe
Q 012172 421 SLKVTG---DVWFGANITLKGKVTIAA 444 (469)
Q Consensus 421 ~l~v~G---~v~fg~~V~i~g~~~I~~ 444 (469)
.++|.+ ++++|++|.|+.+|+|.+
T Consensus 117 ~~~I~~~~~~~~IG~~~~Ig~~~~I~~ 143 (252)
T 3jqy_B 117 GFEVVTDKCNVTIGHDCMIARDVILRA 143 (252)
T ss_dssp TCEEECSSSEEEECTTCEECSSEEEEC
T ss_pred CcEEEeCCCCeEECCCCEEcCCcEEec
Confidence 444444 666666666666666654
|
| >3fs8_A QDTC; acetyltransferase, natural product, deoxysugar; HET: ACO; 1.70A {Thermoanaerobacteriumthermosaccharolyticum} PDB: 3fsb_A* 3fsc_A* | Back alignment and structure |
|---|
Probab=91.66 E-value=0.16 Score=48.61 Aligned_cols=23 Identities=4% Similarity=0.105 Sum_probs=10.9
Q ss_pred ceEEEeeEEECCCcEEeeeEEEE
Q 012172 421 SLKVTGDVWFGANITLKGKVTIA 443 (469)
Q Consensus 421 ~l~v~G~v~fg~~V~i~g~~~I~ 443 (469)
.++|.++|++|+++.|+.+|+|.
T Consensus 32 ~~~I~~~v~Ig~~~~I~~~~~I~ 54 (273)
T 3fs8_A 32 GCIIRDNVHIKKGSFIGARSILG 54 (273)
T ss_dssp TCEECSSEEECTTCEECTTCEEE
T ss_pred CCEECCCCEECCCcEECCCcEeC
Confidence 34444444444444444444444
|
| >3mc4_A WW/RSP5/WWP domain:bacterial transferase hexapept repeat:serine O-acetyltransferase...; ssgcid, structural genomics; 1.95A {Brucella melitensis biovar abortus} | Back alignment and structure |
|---|
Probab=91.30 E-value=0.13 Score=50.33 Aligned_cols=32 Identities=16% Similarity=0.202 Sum_probs=16.8
Q ss_pred EEECCCcEEeeeEEEE--ecCCCceeeCCCCeee
Q 012172 428 VWFGANITLKGKVTIA--AKSGEKLEIPDGAVLE 459 (469)
Q Consensus 428 v~fg~~V~i~g~~~I~--~~~~~~~~I~~~s~le 459 (469)
+++|+||.|+.+++|. ...|+.+.|.++|++.
T Consensus 217 ~~IGd~v~IGaga~Il~gv~IG~~a~IGagsvV~ 250 (287)
T 3mc4_A 217 PKIRQGVLIGAGAKILGNIQVGQCSKIAAGSVVL 250 (287)
T ss_dssp CEECTTCEECTTCEEESSCEECTTCEECTTCEEC
T ss_pred CEECCCCEECCCCEECCCcEECCCCEECCCCEEc
Confidence 4555555555555554 3345555555555553
|
| >3r0s_A Acyl-[acyl-carrier-protein]--UDP-N-acetylglucosam acyltransferase; structural genomics; 2.30A {Campylobacter jejuni subsp} SCOP: b.81.1.0 | Back alignment and structure |
|---|
Probab=91.03 E-value=0.095 Score=50.39 Aligned_cols=40 Identities=13% Similarity=0.195 Sum_probs=26.8
Q ss_pred CceEEEeeEEECCCcEEeeeEEEE---------------ecCCCceeeCCCCeee
Q 012172 420 DSLKVTGDVWFGANITLKGKVTIA---------------AKSGEKLEIPDGAVLE 459 (469)
Q Consensus 420 ~~l~v~G~v~fg~~V~i~g~~~I~---------------~~~~~~~~I~~~s~le 459 (469)
.+++|.|++++|+++.|..+++|. ...|+.+.|.++++|.
T Consensus 45 ~~~~I~g~~~IG~~~~I~~~a~I~~~~~~~~~~g~~~~~v~IG~~~~Ig~~~~I~ 99 (266)
T 3r0s_A 45 QGARILSDTTIGDHSRVFSYAIVGDIPQDISYKEEQKSGVVIGKNATIREFATIN 99 (266)
T ss_dssp TTCEECSSCEECTTCEECTTCEEEECCSCSCCC----CEEEECTTCEECTTCEEE
T ss_pred CCeEEeCCcEECCCcEEccCceeccCCccccccCCcCceEEECCCCEECCceEec
Confidence 567777788888888888777773 3345555555555554
|
| >2ggo_A 401AA long hypothetical glucose-1-phosphate thymidylyltransferase; beta barrel; 1.80A {Sulfolobus tokodaii} PDB: 2ggq_A* | Back alignment and structure |
|---|
Probab=91.02 E-value=0.14 Score=51.62 Aligned_cols=39 Identities=13% Similarity=0.188 Sum_probs=28.6
Q ss_pred ceEEEeeEEECCCcEEeeeEEEE-ecCCCceeeCCCCeeec
Q 012172 421 SLKVTGDVWFGANITLKGKVTIA-AKSGEKLEIPDGAVLEN 460 (469)
Q Consensus 421 ~l~v~G~v~fg~~V~i~g~~~I~-~~~~~~~~I~~~s~le~ 460 (469)
+++| +++++|+++.|+.++.|. +..|+.+.|.+++++.+
T Consensus 292 ~~~i-~~~~i~~~~~i~~~~~i~~~~Ig~~~~Ig~~~~i~~ 331 (401)
T 2ggo_A 292 SVEV-KESVIMEGSKIPHLSYVGDSVIAEDVNFGAGTLIAN 331 (401)
T ss_dssp TCEE-ESEEECTTCEEEESCEEESCEECTTCEECTTCEECC
T ss_pred CCEE-ecCEEcCCcEECCCceEcceEECCCcEECCCcEEcC
Confidence 4445 567778888888888876 44677788888888863
|
| >1v3w_A Ferripyochelin binding protein; beta-helix, carbonic anhydrase, structural genomics, riken S genomics/proteomics initiative, RSGI, lyase; 1.50A {Pyrococcus horikoshii} SCOP: b.81.1.5 PDB: 1v67_A 2fko_A | Back alignment and structure |
|---|
Probab=90.99 E-value=0.19 Score=44.75 Aligned_cols=48 Identities=17% Similarity=0.209 Sum_probs=34.7
Q ss_pred CceEEEeeEEECCCcEEeeeEEEEe-----cCCCceeeCCCCeee-----cceecCCC
Q 012172 420 DSLKVTGDVWFGANITLKGKVTIAA-----KSGEKLEIPDGAVLE-----NKEINGPG 467 (469)
Q Consensus 420 ~~l~v~G~v~fg~~V~i~g~~~I~~-----~~~~~~~I~~~s~le-----~~~v~~~~ 467 (469)
.+.++.|++.+|+++.|..+++|.+ ..|+.+.|.++++|. +++|+.+.
T Consensus 21 ~~a~i~g~v~IG~~~~I~~~~~i~~~~~~~~IG~~~~I~~~~~I~~~~~~~~~Ig~~~ 78 (173)
T 1v3w_A 21 ENAVVIGDVVLEEKTSVWPSAVLRGDIEQIYVGKYSNVQDNVSIHTSHGYPTEIGEYV 78 (173)
T ss_dssp TTSEEEEEEEECTTCEECTTCEEEEEEEEEEECTTCEECTTCEEECBTTBCEEECSSC
T ss_pred CCCEEeCCEEECCCCEECCCeEEecCCceEEECCCCEECCCcEEEecCCCCeEECCCC
Confidence 5677788888888888888888764 456667777777776 35666554
|
| >3r8y_A 2,3,4,5-tetrahydropyridine-2,6-dicarboxylate N- acetyltransferase; structural genomics, csgid; 1.70A {Bacillus anthracis} PDB: 3cj8_A* | Back alignment and structure |
|---|
Probab=90.92 E-value=0.091 Score=49.55 Aligned_cols=47 Identities=15% Similarity=0.191 Sum_probs=29.0
Q ss_pred ceEEEeeEEECCCcEEeeeEEEEe----------cCCCceeeCCCCee-ecceecCCC
Q 012172 421 SLKVTGDVWFGANITLKGKVTIAA----------KSGEKLEIPDGAVL-ENKEINGPG 467 (469)
Q Consensus 421 ~l~v~G~v~fg~~V~i~g~~~I~~----------~~~~~~~I~~~s~l-e~~~v~~~~ 467 (469)
+++|.+++++|++|.|+.+++|.+ ..++.+.|.++++| ++++|+.+.
T Consensus 133 ~~~I~~~~~IG~~~~I~~~~~i~~~~~~~~~~~~~Ig~~~~IG~~~~I~~~~~Ig~~~ 190 (240)
T 3r8y_A 133 NAVLGGRATVGKNCHVGAGAVLAGVIEPPSAKPVIVEDDVVIGANVVVLEGVTVGKGA 190 (240)
T ss_dssp TCEECTTCEECTTCEECTTCEECCCCSCTTSCCCEECTTCEECTTCEECTTCEECTTC
T ss_pred CCEECCCCEECCCcEECCCcEECCCccCCCCCCcEECCCCEECCCCEECCCcEECCCC
Confidence 455556777777777777776643 23455666666666 566665543
|
| >1ssq_A SAT, serine acetyltransferase; LEFT-handed parallel beta helix; 1.85A {Haemophilus influenzae} SCOP: b.81.1.6 PDB: 1sst_A* 1s80_A 1ssm_A 3gvd_A* | Back alignment and structure |
|---|
Probab=90.86 E-value=0.15 Score=49.45 Aligned_cols=31 Identities=13% Similarity=0.160 Sum_probs=14.7
Q ss_pred EEECCCcEEeeeEEEE--ecCCCceeeCCCCee
Q 012172 428 VWFGANITLKGKVTIA--AKSGEKLEIPDGAVL 458 (469)
Q Consensus 428 v~fg~~V~i~g~~~I~--~~~~~~~~I~~~s~l 458 (469)
+++|++|.|+.+++|. ...|+.+.|.++|++
T Consensus 190 ~~IGd~v~IGaga~Il~gv~IG~~a~IGagsvV 222 (267)
T 1ssq_A 190 PKVREGVMIGAGAKILGNIEVGKYAKIGANSVV 222 (267)
T ss_dssp CEECTTCEECTTCEEESSCEECTTCEECTTCEE
T ss_pred eEECCCeEEcCCCEEeCCcEECCCCEECCCCEE
Confidence 4455555555444444 224444555555544
|
| >3srt_A Maltose O-acetyltransferase; structural genomics, the center structural genomics of infectious diseases, csgid; 2.50A {Clostridium difficile} PDB: 4ebh_A* | Back alignment and structure |
|---|
Probab=90.60 E-value=0.31 Score=44.26 Aligned_cols=37 Identities=27% Similarity=0.429 Sum_probs=24.6
Q ss_pred EeeEEECCCcEEeeeEEEE--ecCCCceeeCCCCeeecc
Q 012172 425 TGDVWFGANITLKGKVTIA--AKSGEKLEIPDGAVLENK 461 (469)
Q Consensus 425 ~G~v~fg~~V~i~g~~~I~--~~~~~~~~I~~~s~le~~ 461 (469)
.+.+++|++|.|+++|+|. ...|+.++|.++|++...
T Consensus 130 ~~~v~IG~~v~IG~~~~I~~gv~IG~~~vIgagsvV~~d 168 (188)
T 3srt_A 130 GSPVKIGDNVWIGGGVIITPGITIGDNVVIGAGSVVTKD 168 (188)
T ss_dssp ECCEEECSSCEECTTCEECTTCEECSSEEECTTCEECSC
T ss_pred CCCcEECCCcEEcCCCEECCCcEECCCCEECCCCEECcc
Confidence 4567777777777777765 456666677777766544
|
| >2v0h_A Bifunctional protein GLMU; cell WALL, magnesium, cell shape, transferase, peptidoglycan synthesis, associative mechanism; 1.79A {Haemophilus influenzae} PDB: 2v0i_A* 2v0j_A* 2v0k_A* 2v0l_A* 2vd4_A* 2w0v_A* 2w0w_A* 3twd_A* | Back alignment and structure |
|---|
Probab=90.58 E-value=0.24 Score=50.73 Aligned_cols=50 Identities=24% Similarity=0.450 Sum_probs=43.3
Q ss_pred CceEEEeeEEECCCcEEeeeEEEE--ecCCCceeeCCCCeeecceecCCCCC
Q 012172 420 DSLKVTGDVWFGANITLKGKVTIA--AKSGEKLEIPDGAVLENKEINGPGDL 469 (469)
Q Consensus 420 ~~l~v~G~v~fg~~V~i~g~~~I~--~~~~~~~~I~~~s~le~~~v~~~~~~ 469 (469)
....+++++.+|+++.|..+|+|. ...|+.+.|.++++|++++|+.+..|
T Consensus 258 ~~~~i~~~~~ig~~~~I~~~~~i~~~~~Ig~~~~I~~~~~i~~~~ig~~~~I 309 (456)
T 2v0h_A 258 ARFDLRGTLEHGKDVEIDVNVIIEGNVKLGDRVKIGTGCVLKNVVIGNDVEI 309 (456)
T ss_dssp GGEEEEEEEEECSSCEECSSEEEEEEEEECTTCEECTTCEEEEEEECTTCEE
T ss_pred CccEEcCceEECCCCEEcCCcEEcCCcEECCCCEECCCCEEEeEEEeCCCEE
Confidence 467889999999999999999996 56888999999999999999887653
|
| >1qre_A Carbonic anhydrase; beta-helix, lyase; 1.46A {Methanosarcina thermophila} SCOP: b.81.1.5 PDB: 1qq0_A 1qrf_A 1qrg_A 1qrm_A 1qrl_A 1thj_A 3otm_A 3ow5_A 3ou9_A 3otz_A 3oup_A | Back alignment and structure |
|---|
Probab=90.57 E-value=0.38 Score=45.53 Aligned_cols=45 Identities=13% Similarity=0.132 Sum_probs=29.0
Q ss_pred CceEEEeeEEECCCcEEeeeEEEE-ecCCCceeeCCCCeeecceec
Q 012172 420 DSLKVTGDVWFGANITLKGKVTIA-AKSGEKLEIPDGAVLENKEIN 464 (469)
Q Consensus 420 ~~l~v~G~v~fg~~V~i~g~~~I~-~~~~~~~~I~~~s~le~~~v~ 464 (469)
.+++|.+++++|++|.|+.+++|. +..|+.+.|.++|++.++.|.
T Consensus 151 ~~~~I~~~~~Ig~~v~IG~~a~I~~v~Ig~~~~IgagsvV~~~~I~ 196 (247)
T 1qre_A 151 HQSQVHGPAAVGDDTFIGMQAFVFKSKVGNNCVLEPRSAAIGVTIP 196 (247)
T ss_dssp TTCEEEEEEEECTTCEECTTCEEEEEEECTTCEECTTCEEESCEEC
T ss_pred CCCEEcCCcEECCCCEECCCCEEeceEECCCCEECCCCEECCeEeC
Confidence 456667777777777777766665 345666667777777444443
|
| >3f1x_A Serine acetyltransferase; NESG X-RAY BVR62 A6KZB9 A6KZB9_BACV8, structural genomics, P protein structure initiative; 2.00A {Bacteroides vulgatus atcc 8482} | Back alignment and structure |
|---|
Probab=90.50 E-value=0.17 Score=50.10 Aligned_cols=31 Identities=10% Similarity=0.155 Sum_probs=15.4
Q ss_pred EECCCcEEeeeEEEE--ecCCCceeeCCCCeee
Q 012172 429 WFGANITLKGKVTIA--AKSGEKLEIPDGAVLE 459 (469)
Q Consensus 429 ~fg~~V~i~g~~~I~--~~~~~~~~I~~~s~le 459 (469)
++|+||.|+.+|+|. ...|+.+.|.++|++.
T Consensus 253 ~IGd~V~IGaga~Il~gv~IGd~a~IGagsvV~ 285 (310)
T 3f1x_A 253 ILEDDVIVYSNATILGRVTIGKGATVGGNIWVT 285 (310)
T ss_dssp EECTTCEECTTCEEESSCEECTTCEECSSCEEC
T ss_pred EECCCcEEcCCCEECCCcEECCCCEECCCCEEC
Confidence 455555555555554 2344445555555553
|
| >3t57_A UDP-N-acetylglucosamine O-acyltransferase domain- protein; LEFT-handed parallel beta helix, lipid A biosynthesis, lipid synthesis; 2.10A {Arabidopsis thaliana} | Back alignment and structure |
|---|
Probab=90.50 E-value=0.12 Score=50.88 Aligned_cols=39 Identities=23% Similarity=0.185 Sum_probs=25.4
Q ss_pred CceEEEeeEEECCCcEEeeeEEEE------ecCCCceeeCCCCee
Q 012172 420 DSLKVTGDVWFGANITLKGKVTIA------AKSGEKLEIPDGAVL 458 (469)
Q Consensus 420 ~~l~v~G~v~fg~~V~i~g~~~I~------~~~~~~~~I~~~s~l 458 (469)
.+++|.|++++|+++.|..+++|. ...|+.+.|.++++|
T Consensus 48 ~~~~I~g~~~IG~~~~I~~~a~I~~d~~g~~~IG~~~~Ig~~a~I 92 (305)
T 3t57_A 48 PSSHVFGNTELGESCVLMTGAVVGDELPGYTFIGCNNIIGHHAVV 92 (305)
T ss_dssp TTCEECSSEEECTTCEECTTCEECCSSSEEEEECSSCEECTTCEE
T ss_pred CCcEECCCcEECCCcEEccCcEeccCCCCceEECCceEECCccEe
Confidence 456666677777777777766663 445566666666666
|
| >3eh0_A UDP-3-O-[3-hydroxymyristoyl] glucosamine N- acyltransferase; LPXD, LEFT-handed parallel beta helix, acyl carrier protein, antibiotic resistance; 2.60A {Escherichia coli} | Back alignment and structure |
|---|
Probab=90.48 E-value=0.11 Score=51.96 Aligned_cols=12 Identities=33% Similarity=0.598 Sum_probs=5.3
Q ss_pred CCceeeCCCCee
Q 012172 447 GEKLEIPDGAVL 458 (469)
Q Consensus 447 ~~~~~I~~~s~l 458 (469)
|+.+.|.++++|
T Consensus 167 G~~~~I~~g~~I 178 (341)
T 3eh0_A 167 GQNCLIQSGTVV 178 (341)
T ss_dssp CSSCEECTTCEE
T ss_pred CCccEEcCCcEE
Confidence 334444444444
|
| >3r1w_A Carbonic anhydrase; beta-helix, lyase; 1.73A {Unidentified} | Back alignment and structure |
|---|
Probab=90.30 E-value=0.21 Score=44.81 Aligned_cols=42 Identities=26% Similarity=0.398 Sum_probs=34.9
Q ss_pred CceEEEeeEEECCCcEEeeeEEEEe-----cCCCceeeCCCCeeecc
Q 012172 420 DSLKVTGDVWFGANITLKGKVTIAA-----KSGEKLEIPDGAVLENK 461 (469)
Q Consensus 420 ~~l~v~G~v~fg~~V~i~g~~~I~~-----~~~~~~~I~~~s~le~~ 461 (469)
....|.+++.+|+++.|..+|+|.+ ..|+.+.|.++++|..+
T Consensus 30 ~~~~i~~~v~IG~~~~I~~~~~i~~~~~~i~IG~~~~I~~~~~I~~~ 76 (189)
T 3r1w_A 30 RSSVIIGDVELGDDCSVWPLAVIRGDMHHIRIGARTSVQDGSVLHIT 76 (189)
T ss_dssp TTCEEEEEEEECTTCEECTTCEEEEEEEEEEECTTCEECTTCEEECB
T ss_pred CCCEEeeeeEECCCCEECCCCEEecCCCceEECCCCEECCCCEEecC
Confidence 5677889999999999999999973 46888888888888765
|
| >3hsq_A Acyl-[acyl-carrier-protein]--UDP-N- acetylglucosamine O-acyltransferase; L.interrogans LPXA, LPXA, LPXA acyltransferase; 2.10A {Leptospira interrogans} SCOP: b.81.1.0 PDB: 3i3a_A* 3i3x_A* | Back alignment and structure |
|---|
Probab=90.22 E-value=0.14 Score=48.95 Aligned_cols=40 Identities=10% Similarity=0.096 Sum_probs=27.1
Q ss_pred CceEEEeeEEECCCcEEeeeEEEE---------------ecCCCceeeCCCCeee
Q 012172 420 DSLKVTGDVWFGANITLKGKVTIA---------------AKSGEKLEIPDGAVLE 459 (469)
Q Consensus 420 ~~l~v~G~v~fg~~V~i~g~~~I~---------------~~~~~~~~I~~~s~le 459 (469)
.+++|.|++++|+++.|..+++|. ...|+.+.|.++++|.
T Consensus 41 ~~~~I~~~~~IG~~~~I~~~a~Ig~~~~~~~~~g~~~~~v~IG~~~~Ig~~~~I~ 95 (259)
T 3hsq_A 41 GHVKICAGSEIGKFNRFHQGAVIGVMPQDLGFNQQLLTKTVIGDHNIFREYSNIH 95 (259)
T ss_dssp TTCEECTTEEECSSCEECTTCEEEECCSCTTCCTTSCCCEEECSSCEECTTCEEE
T ss_pred CCcEEcCCcEECCCcEECCCCEECCCcccccccCccCCcEEECCCcEECCCCEEC
Confidence 567777788888888888888772 2344555566666665
|
| >4e79_A UDP-3-O-acylglucosamine N-acyltransferase; lipopolysaccaride synthesis; 2.66A {Acinetobacter baumannii} PDB: 4e75_A | Back alignment and structure |
|---|
Probab=90.19 E-value=0.11 Score=52.22 Aligned_cols=12 Identities=17% Similarity=0.479 Sum_probs=5.2
Q ss_pred CCceeeCCCCee
Q 012172 447 GEKLEIPDGAVL 458 (469)
Q Consensus 447 ~~~~~I~~~s~l 458 (469)
|+.+.|.++++|
T Consensus 172 G~~~~I~~g~~I 183 (357)
T 4e79_A 172 RDRVRIHSSTVI 183 (357)
T ss_dssp CSSCEECTTCEE
T ss_pred EeEeeccCCeEE
Confidence 333444444444
|
| >3t57_A UDP-N-acetylglucosamine O-acyltransferase domain- protein; LEFT-handed parallel beta helix, lipid A biosynthesis, lipid synthesis; 2.10A {Arabidopsis thaliana} | Back alignment and structure |
|---|
Probab=90.11 E-value=0.24 Score=48.60 Aligned_cols=16 Identities=13% Similarity=0.281 Sum_probs=7.7
Q ss_pred eEEECCCcEEeeeEEE
Q 012172 427 DVWFGANITLKGKVTI 442 (469)
Q Consensus 427 ~v~fg~~V~i~g~~~I 442 (469)
.+.+|+++.|..+++|
T Consensus 77 ~~~IG~~~~Ig~~a~I 92 (305)
T 3t57_A 77 YTFIGCNNIIGHHAVV 92 (305)
T ss_dssp EEEECSSCEECTTCEE
T ss_pred ceEECCceEECCccEe
Confidence 3444445555444444
|
| >4eqy_A Acyl-[acyl-carrier-protein]--UDP-N-acetylglucosam acyltransferase; ssgcid, beta helix, structural genomics, seattle structural center for infectious disease, transferase; 1.80A {Burkholderia thailandensis} | Back alignment and structure |
|---|
Probab=90.02 E-value=0.28 Score=47.51 Aligned_cols=23 Identities=9% Similarity=0.186 Sum_probs=13.0
Q ss_pred CceEEEeeEEECCCcEEeeeEEE
Q 012172 420 DSLKVTGDVWFGANITLKGKVTI 442 (469)
Q Consensus 420 ~~l~v~G~v~fg~~V~i~g~~~I 442 (469)
.+++|.|++++|+++.|..+++|
T Consensus 63 ~~~~I~~~~~IG~~~~I~~~a~I 85 (283)
T 4eqy_A 63 SHSVIEGHTTIGEDNRIGHYASV 85 (283)
T ss_dssp TTCEECSEEEECSSCEECTTEEE
T ss_pred CCCEECCCcEECCCcEEcCCcEE
Confidence 34555555556666655555555
|
| >3c8v_A Putative acetyltransferase; YP_390128.1, structural genomics center for structural genomics, JCSG, protein structure INI PSI-2; 2.28A {Desulfovibrio desulfuricans subsp} | Back alignment and structure |
|---|
Probab=89.76 E-value=0.17 Score=53.27 Aligned_cols=40 Identities=13% Similarity=0.306 Sum_probs=18.8
Q ss_pred eeEEECCCcEEeeeEEEE-ecCCCceeeCCCCeeecceecC
Q 012172 426 GDVWFGANITLKGKVTIA-AKSGEKLEIPDGAVLENKEING 465 (469)
Q Consensus 426 G~v~fg~~V~i~g~~~I~-~~~~~~~~I~~~s~le~~~v~~ 465 (469)
+++++|++++|+.+|+|. +..|+.+.|.++++|.+++|+.
T Consensus 307 ~~v~IG~~~~I~~~~~I~~~vIG~~~~Ig~~a~I~gv~IGd 347 (496)
T 3c8v_A 307 DNAWMGKGSNAQENCYIINSRLERNCVTAHGGKIINAHLGD 347 (496)
T ss_dssp EEEEECTTCEECTTCEEEEEEEEESCEECTTCEEESEEEEE
T ss_pred eceEecCCCEECCCceEeceEeCCCCEECCCcEEcCceECC
Confidence 455555555555444444 2233444444444444444443
|
| >3mqg_A Lipopolysaccharides biosynthesis acetyltransferas; beta helix, acetyl transferase, transferase; HET: ACO U5P UDP PE4; 1.43A {Bordetella petrii} PDB: 3mqh_A* | Back alignment and structure |
|---|
Probab=89.51 E-value=0.15 Score=46.01 Aligned_cols=18 Identities=22% Similarity=0.324 Sum_probs=6.8
Q ss_pred EeeEEECCCcEEeeeEEE
Q 012172 425 TGDVWFGANITLKGKVTI 442 (469)
Q Consensus 425 ~G~v~fg~~V~i~g~~~I 442 (469)
.+++.+|+++.|+.+++|
T Consensus 31 ~~~~~IG~~~~Ig~~~~I 48 (192)
T 3mqg_A 31 CGGAEIGEGCSLGQNVFV 48 (192)
T ss_dssp CTTCEECTTCEECTTCEE
T ss_pred CCCcEECCCCEECCCEEE
Confidence 333333333333333333
|
| >3r8y_A 2,3,4,5-tetrahydropyridine-2,6-dicarboxylate N- acetyltransferase; structural genomics, csgid; 1.70A {Bacillus anthracis} PDB: 3cj8_A* | Back alignment and structure |
|---|
Probab=89.34 E-value=0.15 Score=48.09 Aligned_cols=41 Identities=17% Similarity=0.246 Sum_probs=28.8
Q ss_pred CceEEEeeEEECCCcEEeeeEEEE--ecCCCceeeCCCCeeec
Q 012172 420 DSLKVTGDVWFGANITLKGKVTIA--AKSGEKLEIPDGAVLEN 460 (469)
Q Consensus 420 ~~l~v~G~v~fg~~V~i~g~~~I~--~~~~~~~~I~~~s~le~ 460 (469)
.+.+|.+++++|+++.|+.+|+|. +..|+.+.|.+++++.+
T Consensus 114 ~~s~I~~~~~IG~~~~I~~~~~I~~~~~IG~~~~I~~~~~i~~ 156 (240)
T 3r8y_A 114 MNATINIGAVIGEGSMIDMNAVLGGRATVGKNCHVGAGAVLAG 156 (240)
T ss_dssp TTCEECTTCEECTTCEECTTCEECTTCEECTTCEECTTCEECC
T ss_pred CCCEECCCCEECCCCEECCCCEECCCCEECCCcEECCCcEECC
Confidence 456666777778888887777774 55667777777777744
|
| >1qre_A Carbonic anhydrase; beta-helix, lyase; 1.46A {Methanosarcina thermophila} SCOP: b.81.1.5 PDB: 1qq0_A 1qrf_A 1qrg_A 1qrm_A 1qrl_A 1thj_A 3otm_A 3ow5_A 3ou9_A 3otz_A 3oup_A | Back alignment and structure |
|---|
Probab=89.29 E-value=0.29 Score=46.38 Aligned_cols=39 Identities=18% Similarity=0.307 Sum_probs=22.2
Q ss_pred EEECCCcEEeeeEEEEe--cCCCceeeCCCCeeecceecCC
Q 012172 428 VWFGANITLKGKVTIAA--KSGEKLEIPDGAVLENKEINGP 466 (469)
Q Consensus 428 v~fg~~V~i~g~~~I~~--~~~~~~~I~~~s~le~~~v~~~ 466 (469)
+++|++|.|+.+|+|.+ ..|+.+.|.++++|-+++|+.+
T Consensus 141 v~IG~~v~Ig~~~~I~~~~~Ig~~v~IG~~a~I~~v~Ig~~ 181 (247)
T 1qre_A 141 VYIGNNVSLAHQSQVHGPAAVGDDTFIGMQAFVFKSKVGNN 181 (247)
T ss_dssp EEECTTCEECTTCEEEEEEEECTTCEECTTCEEEEEEECTT
T ss_pred eEECCCCEECCCCEEcCCcEECCCCEECCCCEEeceEECCC
Confidence 55555555555555552 2455666777776655555544
|
| >4eqy_A Acyl-[acyl-carrier-protein]--UDP-N-acetylglucosam acyltransferase; ssgcid, beta helix, structural genomics, seattle structural center for infectious disease, transferase; 1.80A {Burkholderia thailandensis} | Back alignment and structure |
|---|
Probab=89.29 E-value=0.15 Score=49.43 Aligned_cols=39 Identities=26% Similarity=0.222 Sum_probs=26.9
Q ss_pred CceEEEeeEEECCCcEEeeeEEEE--ecCCCceeeCCCCee
Q 012172 420 DSLKVTGDVWFGANITLKGKVTIA--AKSGEKLEIPDGAVL 458 (469)
Q Consensus 420 ~~l~v~G~v~fg~~V~i~g~~~I~--~~~~~~~~I~~~s~l 458 (469)
..++|.++|++|+++.|..+|+|. ...|+.+.|.++++|
T Consensus 45 ~~~~I~~~v~IG~~~~I~~~~~I~~~~~IG~~~~I~~~a~I 85 (283)
T 4eqy_A 45 PYAIVGSNVTIGARTTIGSHSVIEGHTTIGEDNRIGHYASV 85 (283)
T ss_dssp TTCEECTTEEECTTCEECTTCEECSEEEECSSCEECTTEEE
T ss_pred CCCEECCCCEECCCCEECCCCEECCCcEECCCcEEcCCcEE
Confidence 566677777777777777777765 445666667777766
|
| >4e6u_A Acyl-[acyl-carrier-protein]--UDP-N-acetylglucosam acyltransferase; lipopolysaccaride synthesis; 1.41A {Acinetobacter baumannii} PDB: 4e6t_A* | Back alignment and structure |
|---|
Probab=89.26 E-value=0.19 Score=48.02 Aligned_cols=40 Identities=18% Similarity=0.142 Sum_probs=27.4
Q ss_pred CceEEEeeEEECCCcEEeeeEEE--------------EecCCCceeeCCCCeee
Q 012172 420 DSLKVTGDVWFGANITLKGKVTI--------------AAKSGEKLEIPDGAVLE 459 (469)
Q Consensus 420 ~~l~v~G~v~fg~~V~i~g~~~I--------------~~~~~~~~~I~~~s~le 459 (469)
.+++|.|++++|+++.|..+++| ....|+.+.|.++++|.
T Consensus 48 ~~~~I~~~~~IG~~~~I~~~a~Ig~~~~~~~~~g~~~~~~IG~~~~Ig~~~~I~ 101 (265)
T 4e6u_A 48 SHVVVGGFTRIGQNNEIFQFASVGEVCQDLKYKGEETWLEIGNNNLIREHCSLH 101 (265)
T ss_dssp SSCEECSSEEECSSCEECTTCEEEECCCCTTCCSCCCEEEECSSCEECTTCEEE
T ss_pred CCcEEeCCcEECCCCEEcCCcEECCccccccccCCCCeEEECCCeEECCceEEC
Confidence 46677777888888888877777 33455556666666665
|
| >4e6u_A Acyl-[acyl-carrier-protein]--UDP-N-acetylglucosam acyltransferase; lipopolysaccaride synthesis; 1.41A {Acinetobacter baumannii} PDB: 4e6t_A* | Back alignment and structure |
|---|
Probab=88.66 E-value=0.35 Score=46.17 Aligned_cols=17 Identities=12% Similarity=0.161 Sum_probs=10.7
Q ss_pred eEEECCCcEEeeeEEEE
Q 012172 427 DVWFGANITLKGKVTIA 443 (469)
Q Consensus 427 ~v~fg~~V~i~g~~~I~ 443 (469)
.+.+|+++.|+.+|.|.
T Consensus 85 ~~~IG~~~~Ig~~~~I~ 101 (265)
T 4e6u_A 85 WLEIGNNNLIREHCSLH 101 (265)
T ss_dssp EEEECSSCEECTTCEEE
T ss_pred eEEECCCeEECCceEEC
Confidence 56666666666666665
|
| >2pig_A Putative transferase; SCR6, NESG, YDCK, structural genomics, PSI-2, protein structure initiative, northeast structural genomics consortium; 2.38A {Salmonella paratyphi} PDB: 2f9c_A | Back alignment and structure |
|---|
Probab=88.48 E-value=0.31 Score=48.72 Aligned_cols=50 Identities=12% Similarity=0.143 Sum_probs=28.1
Q ss_pred cCceEEEe-eEEECCCcEEeeeEEEE--ecCCCceeeCCCCeeecceecCCCC
Q 012172 419 LDSLKVTG-DVWFGANITLKGKVTIA--AKSGEKLEIPDGAVLENKEINGPGD 468 (469)
Q Consensus 419 ~~~l~v~G-~v~fg~~V~i~g~~~I~--~~~~~~~~I~~~s~le~~~v~~~~~ 468 (469)
..++.|++ ++.+++++.|.++|.|. +..++.+.|.++++|++++|+.|.+
T Consensus 56 ~~~~~I~~~~a~I~~~a~I~~~~~I~g~~~Ig~~~~Ig~~~~I~~~~Ig~~~~ 108 (334)
T 2pig_A 56 QGDCWIYDENAMAFAGTEITGNARITQPCTLYNNVRIGDNVWIDRADISDGAR 108 (334)
T ss_dssp SSSCEECCTTCEEETTCEECTTCEEESSCEEESSCEECTTCEEESCEEESSCE
T ss_pred CCceEEcCCCeEEcCCcEECCCcEEeeeeeECCCcEECCCCEEEeEEEcCCCE
Confidence 34444444 34444444444444443 2334556788888888888877654
|
| >1j2z_A Acyl-[acyl-carrier-protein]--UDP-N-acetylglucosam acyltransferase; UDP-N-acetylglucosamine acyltransferase, LPXA, LEFT-handed B structure; HET: SOG TLA; 2.10A {Helicobacter pylori} SCOP: b.81.1.1 | Back alignment and structure |
|---|
Probab=88.38 E-value=0.18 Score=48.56 Aligned_cols=23 Identities=13% Similarity=0.353 Sum_probs=18.2
Q ss_pred CceEEEeeEEECCCcEEeeeEEE
Q 012172 420 DSLKVTGDVWFGANITLKGKVTI 442 (469)
Q Consensus 420 ~~l~v~G~v~fg~~V~i~g~~~I 442 (469)
.+++|.|++++|+++.|..+|+|
T Consensus 42 ~~~~I~g~~~IG~~~~I~~~~~I 64 (270)
T 1j2z_A 42 NNVTLQGHTFVGKNTEIFPFAVL 64 (270)
T ss_dssp TTCEECSEEEECTTCEECTTCEE
T ss_pred CCcEEeCCeEEcCCCEEEeeeEE
Confidence 56777788888888888877777
|
| >3vbi_A ANTD, galactoside O-acetyltransferase; anthrose, acylated sugar, LEFT-handed beta helix, sugar N-AC transferase; HET: COA 0FX; 1.80A {Bacillus cereus} PDB: 3vbj_A* 3vbm_A* 3vbk_A* 3vbp_A* 3vbl_A* 3vbn_A* | Back alignment and structure |
|---|
Probab=88.34 E-value=0.31 Score=44.55 Aligned_cols=42 Identities=14% Similarity=0.158 Sum_probs=25.1
Q ss_pred eEEECCCcEEeeeEEEE--ecCCCceeeCCCCeee----cceecCCCC
Q 012172 427 DVWFGANITLKGKVTIA--AKSGEKLEIPDGAVLE----NKEINGPGD 468 (469)
Q Consensus 427 ~v~fg~~V~i~g~~~I~--~~~~~~~~I~~~s~le----~~~v~~~~~ 468 (469)
++.+|++|.|..+|+|. ...|+.+.|.++++|. +.+|+.++.
T Consensus 52 ~v~IG~~~~I~~~~~I~~~v~IG~~~~I~~~~~I~~~~~~~~IG~~~~ 99 (205)
T 3vbi_A 52 VISIGNNVRIDDFCILSGKVTIGSYSHIAAYTALYGGEVGIEMYDFAN 99 (205)
T ss_dssp GEEECSSEEECTTCEEEEEEEECSSEEECTTCEEEEEEEEEEECTTCE
T ss_pred eeEECCCCEECCCCEEccceEECCCCEECCCeEEEcCCccEEECCCCE
Confidence 45555555555555554 3457778888888883 356665543
|
| >3q1x_A Serine acetyltransferase; cysteine biosynthesis, LEFT handed helix, OASS; 1.59A {Entamoeba histolytica} PDB: 3p47_A 3p1b_A | Back alignment and structure |
|---|
Probab=88.23 E-value=0.23 Score=49.20 Aligned_cols=30 Identities=13% Similarity=0.198 Sum_probs=14.0
Q ss_pred EECCCcEEeeeEEEE--ecCCCceeeCCCCee
Q 012172 429 WFGANITLKGKVTIA--AKSGEKLEIPDGAVL 458 (469)
Q Consensus 429 ~fg~~V~i~g~~~I~--~~~~~~~~I~~~s~l 458 (469)
++|++|.|+.+|+|. ...|+.+.|.++|++
T Consensus 225 ~IGd~v~IGaga~Ilggv~IG~~a~IGagsvV 256 (313)
T 3q1x_A 225 TVGDYVTIGTGAKVLGNIIVGSHVRIGANCWI 256 (313)
T ss_dssp EECSSCEECTTCEEESSCEECSSEEECTTCEE
T ss_pred EECCCCEECCCCEECCCcEECCCCEECCCCEE
Confidence 344444444444443 233455556666555
|
| >3pmo_A UDP-3-O-[3-hydroxymyristoyl] glucosamine N-acyltr; lipid A biosynthesis pathway, transferase; 1.30A {Pseudomonas aeruginosa} | Back alignment and structure |
|---|
Probab=88.22 E-value=0.21 Score=50.65 Aligned_cols=12 Identities=17% Similarity=0.038 Sum_probs=7.0
Q ss_pred EEeHHHHHHHHH
Q 012172 298 WVNLKAIKRLVE 309 (469)
Q Consensus 298 ~~~l~~L~~~l~ 309 (469)
-+++..|.+++.
T Consensus 25 ~~~~~~ia~~~~ 36 (372)
T 3pmo_A 25 SYTLGQLAAHVG 36 (372)
T ss_dssp EEEHHHHHHHHT
T ss_pred cccHHHHHHHhC
Confidence 355666666654
|
| >4fce_A Bifunctional protein GLMU; GLMU. csgid, niaid, structural genomics, national institute allergy and infectious diseases; HET: GP1; 1.96A {Yersinia pseudotuberculosis} PDB: 3fww_A 1hv9_A* 2oi5_A* 2oi6_A* 2oi7_A* 1fxj_A* 1fwy_A* | Back alignment and structure |
|---|
Probab=88.03 E-value=0.45 Score=48.65 Aligned_cols=52 Identities=25% Similarity=0.474 Sum_probs=43.7
Q ss_pred ccCceEEEeeEEECCCcEEeeeEEEE--ecCCCceeeCCCCeeecceecCCCCC
Q 012172 418 ELDSLKVTGDVWFGANITLKGKVTIA--AKSGEKLEIPDGAVLENKEINGPGDL 469 (469)
Q Consensus 418 ~~~~l~v~G~v~fg~~V~i~g~~~I~--~~~~~~~~I~~~s~le~~~v~~~~~~ 469 (469)
......+++++.+|+++.|..+|+|. +..|+.+.|.++++|++++|+.+..|
T Consensus 259 ~p~~~~~~~~~~ig~~~~i~~~~~i~~~~~ig~~~~I~~~~~i~~~~Ig~~~~I 312 (459)
T 4fce_A 259 DPSRFDLRGELTHGRDITIDTNVIIEGHVILGDRVRIGTGCVLKNCVIGDDSEI 312 (459)
T ss_dssp CGGGEEEEEEEEECSSCEECTTEEEEEEEEECTTCEECTTCEEESCEECTTCEE
T ss_pred CCCeEEEeCcEEECCCcEECCCeeeccceEECCCCEECCCCEEeccEECCCCEE
Confidence 34567788999999999999999886 56788899999999999999887653
|
| >3r0s_A Acyl-[acyl-carrier-protein]--UDP-N-acetylglucosam acyltransferase; structural genomics; 2.30A {Campylobacter jejuni subsp} SCOP: b.81.1.0 | Back alignment and structure |
|---|
Probab=87.97 E-value=0.31 Score=46.69 Aligned_cols=18 Identities=33% Similarity=0.403 Sum_probs=12.3
Q ss_pred eeEEECCCcEEeeeEEEE
Q 012172 426 GDVWFGANITLKGKVTIA 443 (469)
Q Consensus 426 G~v~fg~~V~i~g~~~I~ 443 (469)
+.+.+|+++.|+.+|+|.
T Consensus 82 ~~v~IG~~~~Ig~~~~I~ 99 (266)
T 3r0s_A 82 SGVVIGKNATIREFATIN 99 (266)
T ss_dssp CEEEECTTCEECTTCEEE
T ss_pred ceEEECCCCEECCceEec
Confidence 466677777777777666
|
| >3srt_A Maltose O-acetyltransferase; structural genomics, the center structural genomics of infectious diseases, csgid; 2.50A {Clostridium difficile} PDB: 4ebh_A* | Back alignment and structure |
|---|
Probab=87.85 E-value=0.49 Score=42.91 Aligned_cols=15 Identities=13% Similarity=0.516 Sum_probs=6.3
Q ss_pred eEEEeeEEECCCcEE
Q 012172 422 LKVTGDVWFGANITL 436 (469)
Q Consensus 422 l~v~G~v~fg~~V~i 436 (469)
++|..+|.||++|+|
T Consensus 97 i~IG~~~~Ig~~v~I 111 (188)
T 3srt_A 97 IEIGDNVMLAPNVQI 111 (188)
T ss_dssp EEECSSCEECTTCEE
T ss_pred eEECCeeEECCCcEE
Confidence 333334444444444
|
| >2qia_A UDP-N-acetylglucosamine acyltransferase; LEFT-handed parallel beta helix; HET: U20; 1.74A {Escherichia coli K12} SCOP: b.81.1.1 PDB: 1lxa_A 2jf3_A* 2aq9_A* 2qiv_X* 2jf2_A | Back alignment and structure |
|---|
Probab=87.84 E-value=0.47 Score=45.08 Aligned_cols=23 Identities=17% Similarity=0.235 Sum_probs=14.4
Q ss_pred CceEEEeeEEECCCcEEeeeEEE
Q 012172 420 DSLKVTGDVWFGANITLKGKVTI 442 (469)
Q Consensus 420 ~~l~v~G~v~fg~~V~i~g~~~I 442 (469)
.+++|.|++++|+++.|..+|+|
T Consensus 46 ~~~~I~~~~~IG~~~~I~~~~~I 68 (262)
T 2qia_A 46 SHVVVNGHTKIGRDNEIYQFASI 68 (262)
T ss_dssp SSCEECSEEEECSSCEECTTCEE
T ss_pred CCCEECCCcEECCCCEEecceEE
Confidence 45556666666666666666666
|
| >3ftt_A Putative acetyltransferase sacol2570; galactoside O-acetyltransferase, enzyme, structural genomics, acyltransferase; 1.60A {Staphylococcus aureus subsp} PDB: 3v4e_A* 4dcl_A 4egg_A | Back alignment and structure |
|---|
Probab=87.65 E-value=0.45 Score=43.53 Aligned_cols=15 Identities=13% Similarity=0.277 Sum_probs=7.0
Q ss_pred EEECCCcEEeeeEEE
Q 012172 428 VWFGANITLKGKVTI 442 (469)
Q Consensus 428 v~fg~~V~i~g~~~I 442 (469)
+++|++|.|+.+|.|
T Consensus 95 v~IG~~v~Ig~~~~I 109 (199)
T 3ftt_A 95 ITIGDNVFIGPNCGF 109 (199)
T ss_dssp EEECSSEEECTTCEE
T ss_pred EEECCCCEECCCCEE
Confidence 444444444444444
|
| >3fs8_A QDTC; acetyltransferase, natural product, deoxysugar; HET: ACO; 1.70A {Thermoanaerobacteriumthermosaccharolyticum} PDB: 3fsb_A* 3fsc_A* | Back alignment and structure |
|---|
Probab=87.50 E-value=0.28 Score=46.82 Aligned_cols=6 Identities=17% Similarity=0.230 Sum_probs=2.4
Q ss_pred cceecC
Q 012172 460 NKEING 465 (469)
Q Consensus 460 ~~~v~~ 465 (469)
+++|+.
T Consensus 88 ~~~Ig~ 93 (273)
T 3fs8_A 88 DTIIGD 93 (273)
T ss_dssp SCEECT
T ss_pred CCEECC
Confidence 344433
|
| >2qia_A UDP-N-acetylglucosamine acyltransferase; LEFT-handed parallel beta helix; HET: U20; 1.74A {Escherichia coli K12} SCOP: b.81.1.1 PDB: 1lxa_A 2jf3_A* 2aq9_A* 2qiv_X* 2jf2_A | Back alignment and structure |
|---|
Probab=87.43 E-value=0.31 Score=46.39 Aligned_cols=40 Identities=28% Similarity=0.210 Sum_probs=25.9
Q ss_pred CceEEEeeEEECCCcEEeeeEEEE--ecCCCceeeCCCCeee
Q 012172 420 DSLKVTGDVWFGANITLKGKVTIA--AKSGEKLEIPDGAVLE 459 (469)
Q Consensus 420 ~~l~v~G~v~fg~~V~i~g~~~I~--~~~~~~~~I~~~s~le 459 (469)
..+.|.+++++|+++.|..+|+|. ...|+.+.|.++++|.
T Consensus 28 ~~~~I~~~v~IG~~~~I~~~~~I~~~~~IG~~~~I~~~~~I~ 69 (262)
T 2qia_A 28 PFCIVGPHVEIGEGTVLKSHVVVNGHTKIGRDNEIYQFASIG 69 (262)
T ss_dssp TTCEECTTEEECTTCEECSSCEECSEEEECSSCEECTTCEEE
T ss_pred CCCEECCCCEECCCcEECCCCEECCCcEECCCCEEecceEEC
Confidence 455566666666666666666665 4456667777777774
|
| >2p2o_A Maltose transacetylase; GK1921, GKA001001921.1, geobacillus kaustophilus structural genomics, PSI; 1.74A {Geobacillus kaustophilus} PDB: 2ic7_A | Back alignment and structure |
|---|
Probab=87.25 E-value=0.52 Score=42.75 Aligned_cols=23 Identities=17% Similarity=0.115 Sum_probs=13.1
Q ss_pred ceEEE--eeEEECCCcEEeeeEEEE
Q 012172 421 SLKVT--GDVWFGANITLKGKVTIA 443 (469)
Q Consensus 421 ~l~v~--G~v~fg~~V~i~g~~~I~ 443 (469)
.++|. +.+++|++|.|+.+|.|.
T Consensus 86 ~~~i~~~~~i~IG~~v~Ig~~v~I~ 110 (185)
T 2p2o_A 86 DGVILDVCEVRIGDHCFIGPGVHIY 110 (185)
T ss_dssp SEEEECSSCEEECTTCEECTTCEEE
T ss_pred CeEEEeccceEECCCcEEeCCCEEE
Confidence 44443 456666666666666663
|
| >1ocx_A Maltose O-acetyltransferase; LEFT-handed parallel beta-helix; 2.15A {Escherichia coli} SCOP: b.81.1.3 | Back alignment and structure |
|---|
Probab=87.18 E-value=0.62 Score=42.14 Aligned_cols=35 Identities=26% Similarity=0.467 Sum_probs=21.0
Q ss_pred EeeEEECCCcEEeeeEEEE--ecCCCceeeCCCCeee
Q 012172 425 TGDVWFGANITLKGKVTIA--AKSGEKLEIPDGAVLE 459 (469)
Q Consensus 425 ~G~v~fg~~V~i~g~~~I~--~~~~~~~~I~~~s~le 459 (469)
.+++++|++|.|+++|+|. ...|+.++|.++|++.
T Consensus 126 ~~~v~IG~~v~Ig~~a~I~~gv~IG~~~vIgagsvV~ 162 (182)
T 1ocx_A 126 GKPVTIGNNVWIGGRAVINPGVTIGDNVVVASGAVVT 162 (182)
T ss_dssp ECCEEECTTCEECTTCEECTTCEECTTCEECTTCEEC
T ss_pred cCCeEEeCCeEECCCCEECCCcEECCCCEECCCCEEC
Confidence 4466666666666666665 3355556666666554
|
| >1t3d_A SAT, serine acetyltransferase; LEFT-handed-beta-helix, dimer of trimers; 2.20A {Escherichia coli} SCOP: b.81.1.6 | Back alignment and structure |
|---|
Probab=86.90 E-value=0.4 Score=46.94 Aligned_cols=31 Identities=16% Similarity=0.238 Sum_probs=14.9
Q ss_pred EEECCCcEEeeeEEEE--ecCCCceeeCCCCee
Q 012172 428 VWFGANITLKGKVTIA--AKSGEKLEIPDGAVL 458 (469)
Q Consensus 428 v~fg~~V~i~g~~~I~--~~~~~~~~I~~~s~l 458 (469)
+++|++|.|+.+++|. ...|+.+.|.++|++
T Consensus 210 ~~IGd~v~IGaga~Ilggv~IG~~a~IGagsvV 242 (289)
T 1t3d_A 210 PKIREGVMIGAGAKILGNIEVGRGAKIGAGSVV 242 (289)
T ss_dssp CEECTTCEECTTCEEESSCEECTTCEECTTCEE
T ss_pred eEECCCeEECCCCEEecCcEECCCCEECCCCEE
Confidence 4455555555444444 224444555555544
|
| >2wlg_A Polysialic acid O-acetyltransferase; enzyme, LEFT-handed beta HEL; HET: SOP; 1.90A {Neisseria meningitidis serogroup Y} PDB: 2wld_A 2wle_A* 2wlf_A* 2wlc_A* | Back alignment and structure |
|---|
Probab=86.85 E-value=0.78 Score=42.25 Aligned_cols=34 Identities=15% Similarity=0.170 Sum_probs=18.1
Q ss_pred eEEECCCcEEeeeEEEE-----ecCCCceeeCCCCeeec
Q 012172 427 DVWFGANITLKGKVTIA-----AKSGEKLEIPDGAVLEN 460 (469)
Q Consensus 427 ~v~fg~~V~i~g~~~I~-----~~~~~~~~I~~~s~le~ 460 (469)
.+.+|+++.|+..+++. ...|+.+.|.++++|.+
T Consensus 79 ~~~IG~~~~Ig~~~ii~~~~~~i~IG~~~~Ig~~~~I~~ 117 (215)
T 2wlg_A 79 SLQIQAKTTMGNGEITIAEKGKISIGKDCMLAHGYEIRN 117 (215)
T ss_dssp EEEECTTCEECSEEEEECTTCEEEECTTCEECTTEEEES
T ss_pred eEEEcCCCEECCEEEEEeCCCCEEECCCCEEcCCEEEEC
Confidence 47777777777655442 22344444444444443
|
| >3pmo_A UDP-3-O-[3-hydroxymyristoyl] glucosamine N-acyltr; lipid A biosynthesis pathway, transferase; 1.30A {Pseudomonas aeruginosa} | Back alignment and structure |
|---|
Probab=86.72 E-value=0.27 Score=49.78 Aligned_cols=32 Identities=28% Similarity=0.382 Sum_probs=13.6
Q ss_pred eEEECCCcEEeeeEEEE--ecCCCceeeCCCCee
Q 012172 427 DVWFGANITLKGKVTIA--AKSGEKLEIPDGAVL 458 (469)
Q Consensus 427 ~v~fg~~V~i~g~~~I~--~~~~~~~~I~~~s~l 458 (469)
+|.+|+++.|..+|+|. +..|+.+.|.++++|
T Consensus 167 ~v~IG~~~~I~~~~~I~~~~~IG~~v~I~~g~~I 200 (372)
T 3pmo_A 167 RSVIGEGGWLAPRVTLYHDVTIGARVSIQSGAVI 200 (372)
T ss_dssp TCEECTTCEECTTCEECTTEEECTTCEECTTCEE
T ss_pred CCEECCCcccCCCcEEEeeeEECceeeccCCcEE
Confidence 33333444444333333 224444555555554
|
| >2iu8_A LPXD, UDP-3-O-[3-hydroxymyristoyl] glucosamine N-acyltransferase; UDP-3- O-acyl-glucosamine N-acyltransferase, lipid A biosynthesis; HET: PLM UD1; 2.2A {Chlamydia trachomatis} PDB: 2iu9_A* 2iua_A* | Back alignment and structure |
|---|
Probab=86.60 E-value=0.28 Score=49.46 Aligned_cols=16 Identities=6% Similarity=0.115 Sum_probs=12.5
Q ss_pred cEEEEEeEEEeHHHHH
Q 012172 290 KIFNTNNLWVNLKAIK 305 (469)
Q Consensus 290 ~~~Nt~~~~~~l~~L~ 305 (469)
...|+++|.|+.+.+.
T Consensus 74 ~~~~aGiyI~~~~~l~ 89 (374)
T 2iu8_A 74 KSSEAGAIIISRTQFQ 89 (374)
T ss_dssp HTCCCSEEEEEHHHHH
T ss_pred hcCCcEEEEeChhHhh
Confidence 3468899999988764
|
| >3hsq_A Acyl-[acyl-carrier-protein]--UDP-N- acetylglucosamine O-acyltransferase; L.interrogans LPXA, LPXA, LPXA acyltransferase; 2.10A {Leptospira interrogans} SCOP: b.81.1.0 PDB: 3i3a_A* 3i3x_A* | Back alignment and structure |
|---|
Probab=86.20 E-value=0.4 Score=45.65 Aligned_cols=19 Identities=11% Similarity=0.092 Sum_probs=11.0
Q ss_pred EeeEEECCCcEEeeeEEEE
Q 012172 425 TGDVWFGANITLKGKVTIA 443 (469)
Q Consensus 425 ~G~v~fg~~V~i~g~~~I~ 443 (469)
.+.+.+|+++.|+.+|.|.
T Consensus 77 ~~~v~IG~~~~Ig~~~~I~ 95 (259)
T 3hsq_A 77 LTKTVIGDHNIFREYSNIH 95 (259)
T ss_dssp CCCEEECSSCEECTTCEEE
T ss_pred CCcEEECCCcEECCCCEEC
Confidence 3455566666666666555
|
| >3brk_X Glucose-1-phosphate adenylyltransferase; ADP-glucose pyrophosphorylase, allostery, kinetics, structure-function relationships; 2.10A {Agrobacterium tumefaciens} | Back alignment and structure |
|---|
Probab=86.10 E-value=0.46 Score=48.33 Aligned_cols=41 Identities=7% Similarity=0.222 Sum_probs=26.8
Q ss_pred CceEEEeeEEECCCcEEeeeEEEE-ecCCCceeeCCCCeeecc
Q 012172 420 DSLKVTGDVWFGANITLKGKVTIA-AKSGEKLEIPDGAVLENK 461 (469)
Q Consensus 420 ~~l~v~G~v~fg~~V~i~g~~~I~-~~~~~~~~I~~~s~le~~ 461 (469)
.+++|+ ++++|+++.|+.+|+|. +..|+.+.|++++++.+.
T Consensus 351 ~~~~i~-~~~i~~~~~i~~~~~i~~~~ig~~~~i~~~~~i~~~ 392 (420)
T 3brk_X 351 SYSRLE-NAVVLPSVKIGRHAQLSNVVIDHGVVIPEGLIVGED 392 (420)
T ss_dssp TTCEEE-EEEECTTCEECTTCEEEEEEECTTCEECTTCEESSC
T ss_pred CCCEEc-ceEEcCCCEECCCCEEeceEECCCCEECCCCEEeCC
Confidence 344443 56777888887777776 335666777777777643
|
| >1krr_A Galactoside O-acetyltransferase; LEFT-handed parallel beta helix; HET: ACO; 2.50A {Escherichia coli} SCOP: b.81.1.3 PDB: 1kqa_A* 1kru_A* 1krv_A* | Back alignment and structure |
|---|
Probab=86.02 E-value=1 Score=41.49 Aligned_cols=36 Identities=19% Similarity=0.314 Sum_probs=22.5
Q ss_pred EEeeEEECCCcEEeeeEEEE--ecCCCceeeCCCCeee
Q 012172 424 VTGDVWFGANITLKGKVTIA--AKSGEKLEIPDGAVLE 459 (469)
Q Consensus 424 v~G~v~fg~~V~i~g~~~I~--~~~~~~~~I~~~s~le 459 (469)
+.+++++|++|.|+++|+|. ...|+.++|.++|++-
T Consensus 128 ~~~~v~IGd~v~IG~~a~I~~gv~IG~~~vIgagsvV~ 165 (203)
T 1krr_A 128 YSFPITIGNNVWIGSHVVINPGVTIGDNSVIGAGSIVT 165 (203)
T ss_dssp EECCEEECTTCEECTTCEECTTCEECTTCEECTTCEEC
T ss_pred eCCCcEECCCeEECCCCEEeCCeEECCCCEECCCCEEC
Confidence 44566777777777766665 3455566666666653
|
| >1j2z_A Acyl-[acyl-carrier-protein]--UDP-N-acetylglucosam acyltransferase; UDP-N-acetylglucosamine acyltransferase, LPXA, LEFT-handed B structure; HET: SOG TLA; 2.10A {Helicobacter pylori} SCOP: b.81.1.1 | Back alignment and structure |
|---|
Probab=85.66 E-value=0.56 Score=45.10 Aligned_cols=16 Identities=13% Similarity=0.214 Sum_probs=6.8
Q ss_pred EEECCCcEEeeeEEEE
Q 012172 428 VWFGANITLKGKVTIA 443 (469)
Q Consensus 428 v~fg~~V~i~g~~~I~ 443 (469)
+.+|+++.|+.+|+|.
T Consensus 80 ~~IG~~~~I~~~~~I~ 95 (270)
T 1j2z_A 80 LIIGEDNLIREFCMIN 95 (270)
T ss_dssp EEECSSCEECTTCEEC
T ss_pred eEECCCCEECCCeEEc
Confidence 3344444444444443
|
| >3c8v_A Putative acetyltransferase; YP_390128.1, structural genomics center for structural genomics, JCSG, protein structure INI PSI-2; 2.28A {Desulfovibrio desulfuricans subsp} | Back alignment and structure |
|---|
Probab=85.53 E-value=0.36 Score=50.88 Aligned_cols=42 Identities=14% Similarity=0.056 Sum_probs=29.3
Q ss_pred eEEECCCcEEeeeEEEE-ecCCCceeeCCCCeeecc-----eecCCCC
Q 012172 427 DVWFGANITLKGKVTIA-AKSGEKLEIPDGAVLENK-----EINGPGD 468 (469)
Q Consensus 427 ~v~fg~~V~i~g~~~I~-~~~~~~~~I~~~s~le~~-----~v~~~~~ 468 (469)
++++|++|.|+.+++|. +..|+.+.|.++|+|.+. +|+.+..
T Consensus 325 ~~vIG~~~~Ig~~a~I~gv~IGd~v~IG~~a~I~~~~~~~v~IG~~a~ 372 (496)
T 3c8v_A 325 NSRLERNCVTAHGGKIINAHLGDMIFTGFNSFLQGSESSPLKIGDGCV 372 (496)
T ss_dssp EEEEEESCEECTTCEEESEEEEETCEECTTCEEECCSSSCEEECTTCE
T ss_pred ceEeCCCCEECCCcEEcCceECCCcEECCCCEEeCCCCcceEECCCCE
Confidence 55666667776666666 445667888888888776 7777654
|
| >1hm9_A GLMU, UDP-N-acetylglucosamine-1-phosphate uridyltransfe; acetyltransferase, bifunctional, drug design; HET: ACO UD1; 1.75A {Streptococcus pneumoniae} SCOP: b.81.1.4 c.68.1.5 PDB: 1hm8_A* 1hm0_A* 4ac3_A* 4aaw_A* 1g97_A* 1g95_A* | Back alignment and structure |
|---|
Probab=85.40 E-value=0.38 Score=49.48 Aligned_cols=24 Identities=17% Similarity=0.296 Sum_probs=13.5
Q ss_pred CceEEEeeEEECCCcEEeeeEEEE
Q 012172 420 DSLKVTGDVWFGANITLKGKVTIA 443 (469)
Q Consensus 420 ~~l~v~G~v~fg~~V~i~g~~~I~ 443 (469)
.+..|.+++.+|+++.|+.+|+|.
T Consensus 285 ~~~~i~~~~~ig~~~~I~~~~~i~ 308 (468)
T 1hm9_A 285 ANVILKGQTKIGAETVLTNGTYVV 308 (468)
T ss_dssp SSCEEESSCEECTTCEECTTCEEE
T ss_pred CCcEECCCCEECCCCEECCCCEEe
Confidence 345555556666666555555554
|
| >3tv0_A Dynactin subunit 6; LEFT-handed beta-helix, ARP11, cytosol, structural; 2.15A {Homo sapiens} | Back alignment and structure |
|---|
Probab=85.34 E-value=1.1 Score=40.59 Aligned_cols=15 Identities=13% Similarity=0.266 Sum_probs=8.1
Q ss_pred EEECCCcEEeeeEEE
Q 012172 428 VWFGANITLKGKVTI 442 (469)
Q Consensus 428 v~fg~~V~i~g~~~I 442 (469)
+++|+++.|..+|+|
T Consensus 52 i~IG~~~~I~~~~~I 66 (194)
T 3tv0_A 52 IVIGEGNLIEEQALI 66 (194)
T ss_dssp EEECTTCEECTTCEE
T ss_pred eEECCCccccCCccc
Confidence 455555555555555
|
| >1ocx_A Maltose O-acetyltransferase; LEFT-handed parallel beta-helix; 2.15A {Escherichia coli} SCOP: b.81.1.3 | Back alignment and structure |
|---|
Probab=85.14 E-value=0.79 Score=41.42 Aligned_cols=18 Identities=28% Similarity=0.261 Sum_probs=11.0
Q ss_pred eeEEECCCcEEeeeEEEE
Q 012172 426 GDVWFGANITLKGKVTIA 443 (469)
Q Consensus 426 G~v~fg~~V~i~g~~~I~ 443 (469)
+.++||++|.|+.+|.|.
T Consensus 91 ~~i~IG~~v~Ig~~v~I~ 108 (182)
T 1ocx_A 91 CPIRIGDNCMLAPGVHIY 108 (182)
T ss_dssp SCEEECTTCEECTTCEEE
T ss_pred cceEEcCCcEEeCCcEEE
Confidence 456666666666666663
|
| >3hjj_A Maltose O-acetyltransferase; LEFT-handed beta-helix, acyltransferase, struct genomics; 2.15A {Bacillus anthracis} SCOP: b.81.1.0 PDB: 3igj_A* | Back alignment and structure |
|---|
Probab=84.83 E-value=0.59 Score=42.31 Aligned_cols=61 Identities=20% Similarity=0.155 Sum_probs=30.8
Q ss_pred HHHHHHHHHHhhc-CceeecCCccCCCCCeEEECCCcccccccccccccCCcccccCceEEEe--eEEECCCcEEeeeEE
Q 012172 365 LLLVQSDLYTLAD-GFVTRNEARKNPANPTIELGPEFKKVGNFLSRFKSIPSIIELDSLKVTG--DVWFGANITLKGKVT 441 (469)
Q Consensus 365 L~~~~~~~~~l~~-g~l~~~~~r~~~~~p~V~l~~~~~~~~~~~~~i~~~p~~~~~~~l~v~G--~v~fg~~V~i~g~~~ 441 (469)
+..+++.+..+.. +.....|... +..+.+.+++++. |. .+++|.. .+++|++|.|+.+|.
T Consensus 50 ~~~~~~~~~~~~~~~~~I~~~~~~-~~g~~v~IG~~~~--------I~--------~~~~i~~~~~v~IG~~~~Ig~~~~ 112 (190)
T 3hjj_A 50 FTLLNQLLGSSADGKAQINPDFRC-DYGYNIHVGKSFF--------AN--------FNCVILDVCEVRIGDHCMFAPGVH 112 (190)
T ss_dssp HHHHHHHSSEESSSCCEECSSCEE-SSSTTEEECTTCE--------EC--------TTCEEECSSCEEECTTCEECTTCE
T ss_pred HHHHHHHhhhcCCCCcEECCCEEE-EeCCceEECCcee--------eC--------CCeEEEeCCCeEECCceEEcCCcE
Confidence 3444433333444 4555555443 2334567766644 32 3444442 556666666666666
Q ss_pred E
Q 012172 442 I 442 (469)
Q Consensus 442 I 442 (469)
|
T Consensus 113 I 113 (190)
T 3hjj_A 113 I 113 (190)
T ss_dssp E
T ss_pred E
Confidence 6
|
| >3mc4_A WW/RSP5/WWP domain:bacterial transferase hexapept repeat:serine O-acetyltransferase...; ssgcid, structural genomics; 1.95A {Brucella melitensis biovar abortus} | Back alignment and structure |
|---|
Probab=84.81 E-value=0.69 Score=45.21 Aligned_cols=47 Identities=21% Similarity=0.212 Sum_probs=27.0
Q ss_pred ceEEEeeEEECCCcEEeeeEEEEe----------cCCCceeeCCCCeee-cceecCCC
Q 012172 421 SLKVTGDVWFGANITLKGKVTIAA----------KSGEKLEIPDGAVLE-NKEINGPG 467 (469)
Q Consensus 421 ~l~v~G~v~fg~~V~i~g~~~I~~----------~~~~~~~I~~~s~le-~~~v~~~~ 467 (469)
.++|..++++|++|+|..+|+|.+ ..|+.+.|.++++|- +++|+.|.
T Consensus 184 gvvIG~~~~IGd~v~I~~gvtIg~~~~~~~~r~~~IGd~v~IGaga~Il~gv~IG~~a 241 (287)
T 3mc4_A 184 GLVVGETAVVEDNVSILHGVTLGGTGKSSGDRHPKIRQGVLIGAGAKILGNIQVGQCS 241 (287)
T ss_dssp TCEECTTCEECSSCEEETTCEEEC-----CCCSCEECTTCEECTTCEEESSCEECTTC
T ss_pred CeEECCCeEECCCCEEcCCCEEcCCcccCCCcCCEECCCCEECCCCEECCCcEECCCC
Confidence 455555566666666666666553 345556666666654 35555544
|
| >4e79_A UDP-3-O-acylglucosamine N-acyltransferase; lipopolysaccaride synthesis; 2.66A {Acinetobacter baumannii} PDB: 4e75_A | Back alignment and structure |
|---|
Probab=84.38 E-value=0.51 Score=47.42 Aligned_cols=48 Identities=8% Similarity=0.163 Sum_probs=24.5
Q ss_pred CceEEEeeEEECCCcEEeeeEEEE--ecCCCceeeCCCCee-ecceecCCC
Q 012172 420 DSLKVTGDVWFGANITLKGKVTIA--AKSGEKLEIPDGAVL-ENKEINGPG 467 (469)
Q Consensus 420 ~~l~v~G~v~fg~~V~i~g~~~I~--~~~~~~~~I~~~s~l-e~~~v~~~~ 467 (469)
..++|.+++++|++|.|.++|+|. +..|+.+.|.++++| ++++|+.++
T Consensus 125 ~~~~I~~~~~IG~~~~I~~~~~I~~~~~IG~~~~I~~~~~I~~~~~IG~~~ 175 (357)
T 4e79_A 125 HYVVIGENCVVGDNTVIQSHTKLDDNVEVGKDCFIDSYVTITGSSKLRDRV 175 (357)
T ss_dssp TTCEECTTCEECTTCEECTTCEECTTCEECSSCEECTTCEECTTCEECSSC
T ss_pred CCCEECCCCEECCCCEECCCCEECCCCEECCCCEECCCcEEecccEEEeEe
Confidence 445555555555555555555554 334444555555555 344444443
|
| >3f1x_A Serine acetyltransferase; NESG X-RAY BVR62 A6KZB9 A6KZB9_BACV8, structural genomics, P protein structure initiative; 2.00A {Bacteroides vulgatus atcc 8482} | Back alignment and structure |
|---|
Probab=84.35 E-value=0.63 Score=45.98 Aligned_cols=22 Identities=9% Similarity=0.054 Sum_probs=12.1
Q ss_pred CCCceeeCCCCeee-cceecCCC
Q 012172 446 SGEKLEIPDGAVLE-NKEINGPG 467 (469)
Q Consensus 446 ~~~~~~I~~~s~le-~~~v~~~~ 467 (469)
.|+.+.|.++++|- +++|+.|.
T Consensus 254 IGd~V~IGaga~Il~gv~IGd~a 276 (310)
T 3f1x_A 254 LEDDVIVYSNATILGRVTIGKGA 276 (310)
T ss_dssp ECTTCEECTTCEEESSCEECTTC
T ss_pred ECCCcEEcCCCEECCCcEECCCC
Confidence 45556666666654 45555443
|
| >3nz2_A Hexapeptide-repeat containing-acetyltransferase; structural genomics, center for structural genomics of infec diseases, csgid; HET: ACO; 2.35A {Vibrio cholerae o1 biovar eltor} SCOP: b.81.1.0 PDB: 3ect_A* | Back alignment and structure |
|---|
Probab=84.26 E-value=0.49 Score=43.14 Aligned_cols=17 Identities=6% Similarity=0.163 Sum_probs=9.7
Q ss_pred eEEECCCcEEeeeEEEE
Q 012172 427 DVWFGANITLKGKVTIA 443 (469)
Q Consensus 427 ~v~fg~~V~i~g~~~I~ 443 (469)
.+++|++|.|+.+|.|.
T Consensus 96 ~i~IG~~~~Ig~~~~I~ 112 (195)
T 3nz2_A 96 PITIGDHVLIGPSTQFY 112 (195)
T ss_dssp CEEECTTCEECTTCEEE
T ss_pred eEEECCCCEECCCCEEe
Confidence 45566666666555554
|
| >1yp2_A Glucose-1-phosphate adenylyltransferase small subunit; ADP-glucose synthase, ADP-glucose pyrophosphorylase, agpase B; HET: PMB; 2.11A {Solanum tuberosum} SCOP: b.81.1.4 c.68.1.6 PDB: 1yp3_A* 1yp4_A* | Back alignment and structure |
|---|
Probab=84.13 E-value=0.61 Score=47.80 Aligned_cols=19 Identities=11% Similarity=0.167 Sum_probs=12.9
Q ss_pred eeeCCCCeeecceecCCCC
Q 012172 450 LEIPDGAVLENKEINGPGD 468 (469)
Q Consensus 450 ~~I~~~s~le~~~v~~~~~ 468 (469)
+.|.+++.|++++|+.+..
T Consensus 389 ~~Ig~~~~i~~~~Ig~~~~ 407 (451)
T 1yp2_A 389 IGIGKNCHIKRAIIDKNAR 407 (451)
T ss_dssp SEECTTCEEESEEECTTCE
T ss_pred EEECCCCEEeccEeCCCcE
Confidence 5677777777777766543
|
| >2iu8_A LPXD, UDP-3-O-[3-hydroxymyristoyl] glucosamine N-acyltransferase; UDP-3- O-acyl-glucosamine N-acyltransferase, lipid A biosynthesis; HET: PLM UD1; 2.2A {Chlamydia trachomatis} PDB: 2iu9_A* 2iua_A* | Back alignment and structure |
|---|
Probab=83.84 E-value=0.41 Score=48.28 Aligned_cols=21 Identities=14% Similarity=0.142 Sum_probs=9.1
Q ss_pred eEEEeeEEECCCcEEeeeEEE
Q 012172 422 LKVTGDVWFGANITLKGKVTI 442 (469)
Q Consensus 422 l~v~G~v~fg~~V~i~g~~~I 442 (469)
++|.+++.+|+++.|.++|+|
T Consensus 149 ~~I~~~~~IG~~~~I~~~~~I 169 (374)
T 2iu8_A 149 AVVCQHAHVGSACHIGSGSVI 169 (374)
T ss_dssp CEECTTCEECTTCEECTTCEE
T ss_pred CEECCCCEECCCCEECCCcEE
Confidence 334444444444444444444
|
| >3jqy_B NEUO, polysialic acid O-acetyltransferase; LEFT-handed beta-helix polysia; HET: PEG; 1.70A {Escherichia coli} | Back alignment and structure |
|---|
Probab=83.45 E-value=1 Score=42.58 Aligned_cols=35 Identities=17% Similarity=0.283 Sum_probs=26.2
Q ss_pred eEEECCCcEEeeeEEEE-----ecCCCceeeCCCCeeecc
Q 012172 427 DVWFGANITLKGKVTIA-----AKSGEKLEIPDGAVLENK 461 (469)
Q Consensus 427 ~v~fg~~V~i~g~~~I~-----~~~~~~~~I~~~s~le~~ 461 (469)
++++|+++.|+.+|+|. ...|+.+.|.++++|.++
T Consensus 105 ~v~IG~~~~Ig~~~~I~~~~~~~~IG~~~~Ig~~~~I~~~ 144 (252)
T 3jqy_B 105 KVIIGRRTTIGAGFEVVTDKCNVTIGHDCMIARDVILRAS 144 (252)
T ss_dssp EEEECTTCEECTTCEEECSSSEEEECTTCEECSSEEEECS
T ss_pred EEEECCCCEECCCcEEEeCCCCeEECCCCEEcCCcEEecC
Confidence 77778888888777775 456677778888888775
|
| >3eh0_A UDP-3-O-[3-hydroxymyristoyl] glucosamine N- acyltransferase; LPXD, LEFT-handed parallel beta helix, acyl carrier protein, antibiotic resistance; 2.60A {Escherichia coli} | Back alignment and structure |
|---|
Probab=83.00 E-value=0.42 Score=47.62 Aligned_cols=49 Identities=12% Similarity=0.151 Sum_probs=32.0
Q ss_pred CceEEEeeEEECCCcEEeeeEEEE--ecCCCceeeCCCCee-ecceecCCCC
Q 012172 420 DSLKVTGDVWFGANITLKGKVTIA--AKSGEKLEIPDGAVL-ENKEINGPGD 468 (469)
Q Consensus 420 ~~l~v~G~v~fg~~V~i~g~~~I~--~~~~~~~~I~~~s~l-e~~~v~~~~~ 468 (469)
..++|.+++++|+++.|.++|+|. +..|+.+.|.++++| ++++|+.++.
T Consensus 120 ~~~~I~~~v~IG~~~~I~~~~~Ig~~~~IG~~~~I~~~~~I~~~~~IG~~~~ 171 (341)
T 3eh0_A 120 ANAVIESGVELGDNVIIGAGCFVGKNSKIGAGSRLWANVTIYHEIQIGQNCL 171 (341)
T ss_dssp TTCEECTTCEECTTCEECTTCEECTTCEECTTCEECSSCEECTTCEECSSCE
T ss_pred CCcEECCCcEECCCcEECCCcEECCCCEECCCcEECCCcEECCCCEECCccE
Confidence 566677777777777777777774 445555666666666 5666666543
|
| >4ea9_A Perosamine N-acetyltransferase; beta helix, acetyl coenzyme A, GDP-perosa transferase; HET: JBT; 0.90A {Caulobacter vibrioides} PDB: 4ea8_A* 4ea7_A* 4eaa_A* 4eab_A* | Back alignment and structure |
|---|
Probab=82.71 E-value=0.47 Score=43.85 Aligned_cols=22 Identities=14% Similarity=0.475 Sum_probs=9.6
Q ss_pred ceEEEeeEEECCCcEEeeeEEE
Q 012172 421 SLKVTGDVWFGANITLKGKVTI 442 (469)
Q Consensus 421 ~l~v~G~v~fg~~V~i~g~~~I 442 (469)
.++|.+++++|+++.|..+++|
T Consensus 123 ~~~i~~~~~IG~~~~I~~~~~I 144 (220)
T 4ea9_A 123 GVAINADSWIGDLAIINTGAVV 144 (220)
T ss_dssp TCEECTTCEECTTCEECTTCEE
T ss_pred CCEECCCCEECCCCEECCCCEE
Confidence 3334444444444444444444
|
| >3gos_A 2,3,4,5-tetrahydropyridine-2,6-dicarboxylate N- succinyltransferase; 2,3,4,5-tetrahydropyridine-2-carboxylate N-succinyltransfera acyltransferase; 1.80A {Yersinia pestis} SCOP: b.81.1.2 PDB: 1kgq_A* 1kgt_A* 2tdt_A* 3tdt_A* 3bxy_A 1tdt_A | Back alignment and structure |
|---|
Probab=82.62 E-value=0.65 Score=44.94 Aligned_cols=15 Identities=7% Similarity=0.102 Sum_probs=5.8
Q ss_pred EEECCCcEEeeeEEE
Q 012172 428 VWFGANITLKGKVTI 442 (469)
Q Consensus 428 v~fg~~V~i~g~~~I 442 (469)
+++|++|.|+.+|+|
T Consensus 178 v~IGd~v~IG~~a~I 192 (276)
T 3gos_A 178 TIIEDNCFVGARSEV 192 (276)
T ss_dssp CEECTTCEECTTCEE
T ss_pred eEECCCCEECCCCEE
Confidence 333444444333333
|
| >3eg4_A 2,3,4,5-tetrahydropyridine-2,6-dicarboxylate N- succinyltransferase; ssgcid, beta helix, acyltransferase, amino-acid biosynthesis, cytoplasm; 1.87A {Brucella suis} | Back alignment and structure |
|---|
Probab=80.86 E-value=0.73 Score=45.34 Aligned_cols=13 Identities=8% Similarity=0.067 Sum_probs=5.2
Q ss_pred EEECCCcEEeeeE
Q 012172 428 VWFGANITLKGKV 440 (469)
Q Consensus 428 v~fg~~V~i~g~~ 440 (469)
+++|++|.|+.+|
T Consensus 203 v~IGd~v~IG~~a 215 (304)
T 3eg4_A 203 TIIEDNCFIGARS 215 (304)
T ss_dssp CEECTTCEECTTC
T ss_pred eEEcCCCEECCCC
Confidence 3334444443333
|
| >3bfp_A Acetyltransferase; LEFT-handed beta helix, COA binding protein, N-glycan biosynthesis, bacillosamine, structural genomics, MKBSGI; HET: FLC; 1.75A {Campylobacter jejuni} SCOP: b.81.1.8 PDB: 2vhe_A* 3bsw_A* 3bss_A* 3bsy_A* 2npo_A | Back alignment and structure |
|---|
Probab=80.83 E-value=0.62 Score=42.31 Aligned_cols=48 Identities=15% Similarity=0.121 Sum_probs=27.5
Q ss_pred CceEEEeeEEECCCcEEeeeEEEE--ecCCCceeeCCCCeeec-ceecCCC
Q 012172 420 DSLKVTGDVWFGANITLKGKVTIA--AKSGEKLEIPDGAVLEN-KEINGPG 467 (469)
Q Consensus 420 ~~l~v~G~v~fg~~V~i~g~~~I~--~~~~~~~~I~~~s~le~-~~v~~~~ 467 (469)
.+++|.+++++|+++.|..+++|. +..|+.+.|.++++|.+ ++|+.+.
T Consensus 100 ~~~~I~~~~~IG~~~~I~~~~~i~~~~~Ig~~~~I~~~~~i~~~~~Ig~~~ 150 (194)
T 3bfp_A 100 PYVVINAKAKIEKGVILNTSSVIEHECVIGEFSHVSVGAKCAGNVKIGKNC 150 (194)
T ss_dssp TTCEECTTCEECTTCEECTTCEECTTCEECTTCEECTTCEECTTCEECTTC
T ss_pred CCCEECCCCEECCCCEECCCCEEcCCCEECCCCEECCCCEECCCcEECCCC
Confidence 345666667777777776666664 23444455555555554 5555443
|
| >4hur_A Virginiamycin A acetyltransferase; structural genomics, antibiotic resistance, center for struc genomics of infectious diseases (csgid); HET: ACO; 2.15A {Staphylococcus aureus} PDB: 4hus_A* 4e8l_A | Back alignment and structure |
|---|
Probab=80.41 E-value=0.53 Score=43.76 Aligned_cols=38 Identities=32% Similarity=0.452 Sum_probs=26.2
Q ss_pred eEEEeeEEECCCcEEeeeEEEE--ecCCCceeeCCCCeee
Q 012172 422 LKVTGDVWFGANITLKGKVTIA--AKSGEKLEIPDGAVLE 459 (469)
Q Consensus 422 l~v~G~v~fg~~V~i~g~~~I~--~~~~~~~~I~~~s~le 459 (469)
+.+.|+|++|++|.|+.+|+|. ...|+.+.|.++|++-
T Consensus 114 ~~~~g~v~IG~~v~IG~~a~I~~gv~IG~gavIgagsvV~ 153 (220)
T 4hur_A 114 LPLKGDIEIGNDVWIGRDVTIMPGVKIGDGAIIAAEAVVT 153 (220)
T ss_dssp SCCCCCEEECSSCEECTTCEECTTCEECTTCEECTTCEEC
T ss_pred ccccCCeEECCCcEECCCCEEeCCCEECCCCEEcCCCEEc
Confidence 4456777777777777777776 4456667777777774
|
Homologous Structure Domains
Structure Domains Detected by RPS-BLAST 
Original result of RPS-BLAST against SCOP70(version1.75) database
ID ![]() | Alignment Graph ![]() | Length ![]() |
Definition ![]() |
E-value ![]() |
| 469 | ||||
| d2icya2 | 378 | c.68.1.5 (A:6-383) UDP-glucose pyrophosphorylase 2 | 1e-168 | |
| d1jv1a_ | 501 | c.68.1.5 (A:) UDP-N-acetylglucosamine pyrophosphor | 3e-95 | |
| d2icya1 | 83 | b.81.1.4 (A:384-466) UDP-glucose pyrophosphorylase | 3e-41 |
| >d1jv1a_ c.68.1.5 (A:) UDP-N-acetylglucosamine pyrophosphorylase {Human (Homo sapiens), AGX1 [TaxId: 9606]} Length = 501 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Nucleotide-diphospho-sugar transferases superfamily: Nucleotide-diphospho-sugar transferases family: UDP-glucose pyrophosphorylase domain: UDP-N-acetylglucosamine pyrophosphorylase species: Human (Homo sapiens), AGX1 [TaxId: 9606]
Score = 294 bits (754), Expect = 3e-95
Identities = 77/465 (16%), Positives = 160/465 (34%), Gaps = 70/465 (15%)
Query: 16 AGLNQISENEKNGFINLVARYLSGEAQHV---------EWSKIQTPTDKI-VVPCDSLAP 65
N++ E ++ + E + S + ++ VP + L
Sbjct: 20 RFWNELEEAQQVELYAELQAMNFEELNFFFQKAIEGFNQSSHQKNVDARMEPVPREVLGS 79
Query: 66 VPEDPAETKKLLD---------KLVVLKLNGGLGTTMGCTGPKSVIEV--RNGLTFLDLI 114
D + + K+ VL L GG GT +G PK + +V + T +
Sbjct: 80 ATRDQDQLQAWESEGLFQISQNKVAVLLLAGGQGTRLGVAYPKGMYDVGLPSRKTLFQIQ 139
Query: 115 VIQIENLN------AKYGCNVPLLLMNSFNTHDDTSKIIEKYSKSNVE---IHTFNQSQY 165
+I L C +P +M S T + T + K+ ++ + F Q
Sbjct: 140 AERILKLQQVAEKYYGNKCIIPWYIMTSGRTMESTKEFFTKHKYFGLKKENVIFFQQGML 199
Query: 166 PRLCADDFVPLPCKGKTDKDGWYPPGHGDVFPSLMNSGKLDALISQGKEYVFAANSDN-L 224
P + D + L K +K P G+G ++ +L ++ + +G + DN L
Sbjct: 200 PAMSFDGKIILEEK---NKVSMAPDGNGGLYRALAAQNIVEDMEQRGIWSIHVYCVDNIL 256
Query: 225 GAIVDLKILNHLIQNKNEYCMEVTPKTLADVKGGTLISYEGKVQLLEIAQVPDEHVNEFK 284
+ D + + IQ + +V KT G + +G Q++E +++ +
Sbjct: 257 VKVADPRFIGFCIQKGADCGAKVVEKTNPTEPVGVVCRVDGVYQVVEYSEISLATAQKRS 316
Query: 285 SIEK--FKIFNTNNLWVNLKAIKRLVEADALKMEIIPNPKEVDGI------------KVL 330
S + F N N + + ++ +V +++ K++ + +
Sbjct: 317 SDGRLLFNAGNIANHFFTVPFLRDVVNVYEPQLQHHVAQKKIPYVDTQGQLIKPDKPNGI 376
Query: 331 QLETAAGAAIRFFDHAIGCNVHRS-RFLPVKATSDLLLV------QSDLYTLADGFVTRN 383
++E +F + V R F P+K + L +L +V
Sbjct: 377 KMEKFVFDIFQFAKKFVVYEVLREDEFSPLKNADSQNGKDNPTTARHALMSLHHCWV--- 433
Query: 384 EARKNPANPTIELGPEFKKVGNFLSRFKSIPSIIELDSLKVTGDV 428
+ G F + SR +IP + + + + + ++
Sbjct: 434 ----------LNAGGHF--IDENGSRLPAIPRLKDANDVPIQCEI 466
|
| >d2icya1 b.81.1.4 (A:384-466) UDP-glucose pyrophosphorylase 2 (UDPGP 2) {Thale cress (Arabidopsis thaliana) [TaxId: 3702]} Length = 83 | Back information, alignment and structure |
|---|
class: All beta proteins fold: Single-stranded left-handed beta-helix superfamily: Trimeric LpxA-like enzymes family: GlmU C-terminal domain-like domain: UDP-glucose pyrophosphorylase 2 (UDPGP 2) species: Thale cress (Arabidopsis thaliana) [TaxId: 3702]
Score = 139 bits (353), Expect = 3e-41
Identities = 67/83 (80%), Positives = 76/83 (91%)
Query: 384 EARKNPANPTIELGPEFKKVGNFLSRFKSIPSIIELDSLKVTGDVWFGANITLKGKVTIA 443
+AR NP+NP+IELGPEFKKV FLSRFKSIPSI+ELDSLKV+GDVWFG++I LKGKVT+A
Sbjct: 1 KARTNPSNPSIELGPEFKKVATFLSRFKSIPSIVELDSLKVSGDVWFGSSIVLKGKVTVA 60
Query: 444 AKSGEKLEIPDGAVLENKEINGP 466
AKSG KLEIPD AV+ENK INGP
Sbjct: 61 AKSGVKLEIPDRAVVENKNINGP 83
|
Homologous Domains Detected by HHsearch 
Original result of HHsearch against SCOP70(version1.75) database
ID ![]() | Alignment Graph ![]() | Length ![]() |
Definition ![]() |
Probability ![]() |
| Query | 469 | |||
| d2icya2 | 378 | UDP-glucose pyrophosphorylase 2 (UDPGP 2) {Thale c | 100.0 | |
| d1jv1a_ | 501 | UDP-N-acetylglucosamine pyrophosphorylase {Human ( | 100.0 | |
| d2icya1 | 83 | UDP-glucose pyrophosphorylase 2 (UDPGP 2) {Thale c | 99.84 | |
| d2oi6a2 | 248 | N-acetylglucosamine 1-phosphate uridyltransferase | 99.72 | |
| d1g97a2 | 250 | N-acetylglucosamine 1-phosphate uridyltransferase | 99.71 | |
| d1fxoa_ | 292 | RmlA (RfbA) {Pseudomonas aeruginosa [TaxId: 287]} | 99.55 | |
| d1lvwa_ | 295 | RmlA (RfbA) {Archaeon Methanobacterium thermoautot | 99.52 | |
| d1mc3a_ | 291 | RffH {Escherichia coli [TaxId: 562]} | 99.51 | |
| d2cu2a2 | 268 | Putative mannose-1-phosphate guanylyl transferase | 99.48 | |
| d1yp2a2 | 307 | Glucose-1-phosphate adenylyltransferase small subu | 99.39 | |
| d1jyka_ | 229 | CTP:phosphocholine cytidylytransferase LicC {Strep | 99.32 | |
| d1w77a1 | 226 | 4-diphosphocytidyl-2C-methyl-D-erythritol (CDP-me) | 99.21 | |
| d1vpaa_ | 221 | 4-diphosphocytidyl-2C-methyl-D-erythritol (CDP-me) | 99.16 | |
| d1tzfa_ | 259 | Glucose-1-phosphate cytidylyltransferase RfbF {Sal | 99.16 | |
| d1i52a_ | 225 | 4-diphosphocytidyl-2C-methyl-D-erythritol (CDP-me) | 99.15 | |
| d1vgwa_ | 226 | 4-diphosphocytidyl-2C-methyl-D-erythritol (CDP-me) | 99.09 | |
| d1fxja1 | 78 | N-acetylglucosamine 1-phosphate uridyltransferase | 98.6 | |
| d1w55a1 | 205 | IspD/IspF bifunctional enzyme, CDP-me synthase dom | 98.6 | |
| d1e5ka_ | 188 | Molybdenum cofactor biosynthesis protein MobA {Esc | 98.52 | |
| d1h7ea_ | 245 | CMP:2-keto-3-deoxy-manno-octonic acid (CMP-KDO)syn | 98.18 | |
| d1vh1a_ | 246 | CMP:2-keto-3-deoxy-manno-octonic acid (CMP-KDO)syn | 98.05 | |
| d2dpwa1 | 231 | Uncharacterized protein TTHA0179 {Thermus thermoph | 98.04 | |
| d1vica_ | 255 | CMP:2-keto-3-deoxy-manno-octonic acid (CMP-KDO)syn | 98.0 | |
| d1fxja1 | 78 | N-acetylglucosamine 1-phosphate uridyltransferase | 97.61 | |
| d1eyra_ | 225 | CMP acylneuraminate synthetase {Neisseria meningit | 97.58 | |
| d1qwja_ | 228 | CMP acylneuraminate synthetase {Mouse (Mus musculu | 97.44 | |
| d2oi6a1 | 201 | N-acetylglucosamine 1-phosphate uridyltransferase | 96.63 | |
| d1qrea_ | 210 | gamma-carbonic anhydrase {Archaeon Methanosarcina | 95.46 | |
| d1g97a1 | 196 | N-acetylglucosamine 1-phosphate uridyltransferase | 93.76 | |
| d1qrea_ | 210 | gamma-carbonic anhydrase {Archaeon Methanosarcina | 92.48 | |
| d1yp2a1 | 135 | Glucose-1-phosphate adenylyltransferase small subu | 89.32 | |
| d1xata_ | 208 | Xenobiotic acetyltransferase {Pseudomonas aerugino | 86.15 | |
| d1j2za_ | 259 | UDP N-acetylglucosamine acyltransferase {Helicobac | 85.53 | |
| d2jf2a1 | 262 | UDP N-acetylglucosamine acyltransferase {Escherich | 85.08 | |
| d1xhda_ | 172 | Putative acetyltransferase/acyltransferase BC4754 | 84.57 | |
| d1v3wa_ | 173 | Ferripyochelin binding protein {Archaeon Pyrococcu | 83.61 | |
| d1yp2a1 | 135 | Glucose-1-phosphate adenylyltransferase small subu | 83.39 | |
| d1j2za_ | 259 | UDP N-acetylglucosamine acyltransferase {Helicobac | 82.76 |
| >d1jv1a_ c.68.1.5 (A:) UDP-N-acetylglucosamine pyrophosphorylase {Human (Homo sapiens), AGX1 [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Nucleotide-diphospho-sugar transferases superfamily: Nucleotide-diphospho-sugar transferases family: UDP-glucose pyrophosphorylase domain: UDP-N-acetylglucosamine pyrophosphorylase species: Human (Homo sapiens), AGX1 [TaxId: 9606]
Probab=100.00 E-value=5.1e-78 Score=635.27 Aligned_cols=406 Identities=18% Similarity=0.248 Sum_probs=338.0
Q ss_pred HHHHHHHHHHhhhhcccChhHHHHHHHHHHHHhh---cC-CCCccCCccccCCCCccccCCCC-CCCCCChhhHHHhc--
Q 012172 5 AEKLTQLKSAVAGLNQISENEKNGFINLVARYLS---GE-AQHVEWSKIQTPTDKIVVPCDSL-APVPEDPAETKKLL-- 77 (469)
Q Consensus 5 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~-~~~~~~~~~~p~~~~~~~~~~~~-~~~~~~~~~g~~~l-- 77 (469)
.++.++|.++|..++ +..+.++|++.+. ++ ....+|+.++|++++.......- .....+++.|+++|
T Consensus 27 ~~ek~~L~~qL~~id------~~~l~~~~~~a~~~~~~~~~~~~~~~~~~p~p~~~~~~~~~~~~~~~~~~~~G~~~i~~ 100 (501)
T d1jv1a_ 27 EAQQVELYAELQAMN------FEELNFFFQKAIEGFNQSSHQKNVDARMEPVPREVLGSATRDQDQLQAWESEGLFQISQ 100 (501)
T ss_dssp HHHHHHHHHHHHTCC------HHHHHHHHHHHHHCC-----------CCBCCCGGGEEETTTTGGGHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHhcC------HHHHHHHHHHHHHHhhhcccccCccccccCCChhhhcccccChHHHHHHHHhhHHHHhc
Confidence 355567777765432 3444455555544 33 35889999999987643222111 11123456799999
Q ss_pred cceeEEEEcCCCCCcCCCCCCcccccc--CCCCchHHHHHHHHHHhhh------hcCCcccEEEecCCCChHHHHHHHHH
Q 012172 78 DKLVVLKLNGGLGTTMGCTGPKSVIEV--RNGLTFLDLIVIQIENLNA------KYGCNVPLLLMNSFNTHDDTSKIIEK 149 (469)
Q Consensus 78 ~k~avviLAGG~GTRmg~~~PK~l~~v--~~gks~L~~~~~~i~~l~~------~~~~~iplviMtS~~t~e~t~~~~~~ 149 (469)
+|+|||+||||+|||||+++||+++|| ++|+||||+++++++++++ .+++.|||+||||+.||++|++||++
T Consensus 101 gkvavvllaGG~GTRLG~~~pK~~~~v~~~~~ksllql~~e~i~~l~~~a~~~~~~~~~iPl~IMtS~~T~~~t~~~l~~ 180 (501)
T d1jv1a_ 101 NKVAVLLLAGGQGTRLGVAYPKGMYDVGLPSRKTLFQIQAERILKLQQVAEKYYGNKCIIPWYIMTSGRTMESTKEFFTK 180 (501)
T ss_dssp TCEEEEEECCCCCCTTSCSSCGGGCCCCCTTCCCHHHHHHHHHHHHHHHHHHHHSSCCCCCEEEEECTTTHHHHHHHHHH
T ss_pred CCEEEEEECCCccccCCCCCCceeeeeccCCCCcHHHHHHHHHHHHHHHHHHhcCCCCCceEEEECChhHhHHHHHHHHh
Confidence 599999999999999999999999987 8999999999999999975 25688999999999999999999998
Q ss_pred h--cC-CCCceEEEEecCcceecCCCCcccCCCCCCCCcccccCCCcccchhccccchHHHHHHcCCcEEEEEeCcc-cc
Q 012172 150 Y--SK-SNVEIHTFNQSQYPRLCADDFVPLPCKGKTDKDGWYPPGHGDVFPSLMNSGKLDALISQGKEYVFAANSDN-LG 225 (469)
Q Consensus 150 ~--~g-~~~~i~~f~Q~~~P~l~~~~~~~~~~~~~~~~~~~~P~GhGd~~~~L~~sg~L~~l~~~G~~~v~v~n~DN-L~ 225 (469)
| +| .+++|++|+|+++||++.+|+++++++ ++++|+|+||||+|.+|.++|+|++|.++|++|++|+|+|| |+
T Consensus 181 ~~~FGl~~~~v~~f~Q~~~P~~~~~g~i~~~~~---~~i~~~P~GhG~i~~aL~~sG~ld~l~~~Gi~yi~v~~vDN~l~ 257 (501)
T d1jv1a_ 181 HKYFGLKKENVIFFQQGMLPAMSFDGKIILEEK---NKVSMAPDGNGGLYRALAAQNIVEDMEQRGIWSIHVYCVDNILV 257 (501)
T ss_dssp TGGGGSCGGGEEEEECCEEECEETTSCBCEEET---TEECEEECCGGGHHHHHHHTTHHHHHHHTTCCEEEEEETTBTTC
T ss_pred ccccCCCcCceEEEEecCcceECCCCCcccCCC---CcccccCCCchHHHHHHHHCCcHHHHHHCCCEEEEEEecCCccc
Confidence 5 46 467899999999999999999999876 89999999999999999999999999999999999999999 88
Q ss_pred ccccHHHHHHHHHcCCcceEEEeeeccCCCcceEEEEeCCeeEEEEeccCChhhhhhccccc--cccEEEEEeEEEeHHH
Q 012172 226 AIVDLKILNHLIQNKNEYCMEVTPKTLADVKGGTLISYEGKVQLLEIAQVPDEHVNEFKSIE--KFKIFNTNNLWVNLKA 303 (469)
Q Consensus 226 ~~~dp~~Lg~~~~~~~~~~~~v~~k~~~~~~~G~iv~~~g~~~ivEy~~~~~e~~~~~~~~~--~~~~~Nt~~~~~~l~~ 303 (469)
+++||.+|||++.++++++++|++|+.+++++|++|+.+|++++|||+|+|++..+++++.. .|+.+|||||||++++
T Consensus 258 ~~~Dp~~lG~~~~~~~~~~~kvv~k~~~~e~~G~l~~~dg~~~vvEysel~~~~~~~~~~~g~l~f~~~Ni~~~~fsl~f 337 (501)
T d1jv1a_ 258 KVADPRFIGFCIQKGADCGAKVVEKTNPTEPVGVVCRVDGVYQVVEYSEISLATAQKRSSDGRLLFNAGNIANHFFTVPF 337 (501)
T ss_dssp CTTCHHHHHHHHHTTCSEEEEEEECCSTTCSCCEEEEETTEEEEECGGGSCHHHHHCBCTTSSBSSCEEEEEEEEEEHHH
T ss_pred cccCHHHHHHHHhcccceeEEEEEcCCCCcccceEEEECCeEEEEEeccCCHHHHhhccCCCcccccccceeheeeEHHH
Confidence 99999999999999999999999999999999999999999999999999999988886544 5888999999999999
Q ss_pred HHHHHHhcccccccccCCCcCC------------CcceehhHHHhhhHhhhcccceeEeecCc-cccccCCchh------
Q 012172 304 IKRLVEADALKMEIIPNPKEVD------------GIKVLQLETAAGAAIRFFDHAIGCNVHRS-RFLPVKATSD------ 364 (469)
Q Consensus 304 L~~~l~~~~~~lp~~~n~K~~~------------g~~~iqle~~~~d~~~~~~~~~~v~v~r~-eF~pVKn~~d------ 364 (469)
|++++++....||+|+|+|+++ ++++||||+||||+|++++++.+++|+|+ ||+||||+++
T Consensus 338 l~~~~~~~~~~l~~hva~Kki~~~d~~~~~~~p~~~n~iklE~fifD~~~~~~~~~~~~V~R~~eFaPvKN~~~~~~~ds 417 (501)
T d1jv1a_ 338 LRDVVNVYEPQLQHHVAQKKIPYVDTQGQLIKPDKPNGIKMEKFVFDIFQFAKKFVVYEVLREDEFSPLKNADSQNGKDN 417 (501)
T ss_dssp HHHHHHTTGGGCCCEEEEECCCEECTTSCEECCSSCCEEEEECCGGGGGGGCSSEEEEEECHHHHCCBCCSCTTSSSSSS
T ss_pred HHHHHHhcccCCCceEeccccCccCCCCCcccCCCCcchhHHHHHHHHHHhccceEEEEEchhhccccccCCCCCCCCCC
Confidence 9999988778999999999885 35689999999999999999999999996 9999999753
Q ss_pred HHHHHHHHHHhhcCceeecCCccCCCCCeEEECCCcccccccccccccCCcccccCceEEEeeE-----EECCCc
Q 012172 365 LLLVQSDLYTLADGFVTRNEARKNPANPTIELGPEFKKVGNFLSRFKSIPSIIELDSLKVTGDV-----WFGANI 434 (469)
Q Consensus 365 L~~~~~~~~~l~~g~l~~~~~r~~~~~p~V~l~~~~~~~~~~~~~i~~~p~~~~~~~l~v~G~v-----~fg~~V 434 (469)
..+|+.+++.+++.|+..+|..+ ++++..|++.+|.+.+..++.+.++| ++|+|.
T Consensus 418 p~ta~~~l~~~~~~wl~~aG~~~---------------~~~~~~~~~~~~~~~~~~~~~~~~EIsp~~sy~GEgL 477 (501)
T d1jv1a_ 418 PTTARHALMSLHHCWVLNAGGHF---------------IDENGSRLPAIPRLKDANDVPIQCEISPLISYAGEGL 477 (501)
T ss_dssp HHHHHHHHHHHHHHHHHHTTCEE---------------BCTTCCBCCSSCCCCSTTCCCCCEEECTTTCSSSCSC
T ss_pred HHHHHHHHHHHhHHHHHHcCCeE---------------ecccccccccccccccccCCCceEEECCcccccccCH
Confidence 67899999999999999998532 22345567677777777777777666 456554
|
| >d2icya1 b.81.1.4 (A:384-466) UDP-glucose pyrophosphorylase 2 (UDPGP 2) {Thale cress (Arabidopsis thaliana) [TaxId: 3702]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Single-stranded left-handed beta-helix superfamily: Trimeric LpxA-like enzymes family: GlmU C-terminal domain-like domain: UDP-glucose pyrophosphorylase 2 (UDPGP 2) species: Thale cress (Arabidopsis thaliana) [TaxId: 3702]
Probab=99.84 E-value=1.2e-21 Score=154.41 Aligned_cols=80 Identities=81% Similarity=1.266 Sum_probs=76.2
Q ss_pred ccCCCCCeEEECCCcccccccccccccCCcccccCceEEEeeEEECCCcEEeeeEEEEecCCCceeeCCCCeeecceecC
Q 012172 386 RKNPANPTIELGPEFKKVGNFLSRFKSIPSIIELDSLKVTGDVWFGANITLKGKVTIAAKSGEKLEIPDGAVLENKEING 465 (469)
Q Consensus 386 r~~~~~p~V~l~~~~~~~~~~~~~i~~~p~~~~~~~l~v~G~v~fg~~V~i~g~~~I~~~~~~~~~I~~~s~le~~~v~~ 465 (469)
|..+..|.|.|+++|+++++|++||+++|||++|++|+|+|||+||+||+++|+|+|.|+.|++++||+|++|||++|.+
T Consensus 3 r~~~~~P~I~L~~~fkkv~~f~~rf~~iPsl~e~d~LtV~GdV~FG~~V~lkG~V~I~a~~g~~~~IPdG~vLenk~v~g 82 (83)
T d2icya1 3 RTNPSNPSIELGPEFKKVATFLSRFKSIPSIVELDSLKVSGDVWFGSSIVLKGKVTVAAKSGVKLEIPDRAVVENKNING 82 (83)
T ss_dssp CCSSSCCEEEECGGGCSHHHHHHTBSSCCBCTTEEEEEEESEEEECSSCEEEEEEEEECCTTCEEEECTTCEEESCEECC
T ss_pred ccCCCCCEEEcchhhheHHHHHHhcCCCCChhhCCEEEEEeeEEECCCCEEEEEEEEEeCCCCeEecCCCCEEcCcEeeC
Confidence 44457799999999999999999999999999999999999999999999999999999999999999999999999976
|
| >d2oi6a2 c.68.1.5 (A:4-251) N-acetylglucosamine 1-phosphate uridyltransferase GlmU, N-terminal domain {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Nucleotide-diphospho-sugar transferases superfamily: Nucleotide-diphospho-sugar transferases family: UDP-glucose pyrophosphorylase domain: N-acetylglucosamine 1-phosphate uridyltransferase GlmU, N-terminal domain species: Escherichia coli [TaxId: 562]
Probab=99.72 E-value=1.8e-16 Score=148.76 Aligned_cols=238 Identities=17% Similarity=0.145 Sum_probs=153.5
Q ss_pred ceeEEEEcCCCCCcCCCCCCccccccCCCCchHHHHHHHHHHhhhhcCCcccEEEecCCCChHHHHHHHHHhcCCCCceE
Q 012172 79 KLVVLKLNGGLGTTMGCTGPKSVIEVRNGLTFLDLIVIQIENLNAKYGCNVPLLLMNSFNTHDDTSKIIEKYSKSNVEIH 158 (469)
Q Consensus 79 k~avviLAGG~GTRmg~~~PK~l~~v~~gks~L~~~~~~i~~l~~~~~~~iplviMtS~~t~e~t~~~~~~~~g~~~~i~ 158 (469)
.+.|||||||+||||+++.||+|++| .|+|+++|+++.+....-. .++|.+++ ..+...+++.. ....
T Consensus 2 ~MkvIILAAG~GtRm~~~~PKpli~i-~gkpiie~~i~~l~~~~~~-----~iiiv~~~-~~~~~~~~~~~-----~~~~ 69 (248)
T d2oi6a2 2 AMSVVILAAGKGTRMYSDLPKVLHTL-AGKAMVQHVIDAANELGAA-----HVHLVYGH-GGDLLKQALKD-----DNLN 69 (248)
T ss_dssp CEEEEEECCSCCGGGCCSSCGGGSEE-TTEEHHHHHHHHHHHHTCS-----CEEEEESS-CHHHHHHHCCC-----TTEE
T ss_pred CceEEEECCCCCCCCCCCCCeeeEEE-CChhHHHHHHHHHHHcCCc-----EEEeccCc-ccceeeeeccc-----cccc
Confidence 46799999999999999999999999 9999999999999887532 44454455 55555444322 1233
Q ss_pred EEEecCcceecCCCCcccCCCCCCCCcccccCCCcccchhccccchHHHHHHcCCcEEEEEeCccccccccHHHHHHHHH
Q 012172 159 TFNQSQYPRLCADDFVPLPCKGKTDKDGWYPPGHGDVFPSLMNSGKLDALISQGKEYVFAANSDNLGAIVDLKILNHLIQ 238 (469)
Q Consensus 159 ~f~Q~~~P~l~~~~~~~~~~~~~~~~~~~~P~GhGd~~~~L~~sg~L~~l~~~G~~~v~v~n~DNL~~~~dp~~Lg~~~~ 238 (469)
...|. .|.|+++.+..+... +. .-..+++.++|.... ++..+.....
T Consensus 70 ~~~~~------------------------~~~g~~~~~~~~~~~------i~-~~~~~~i~~~d~~~~--~~~~~~~~~~ 116 (248)
T d2oi6a2 70 WVLQA------------------------EQLGTGHAMQQAAPF------FA-DDEDILMLYGDVPLI--SVETLQRLRD 116 (248)
T ss_dssp EEECS------------------------SCCCHHHHHHHHGGG------SC-TTSEEEEEETTCTTC--CHHHHHHHHH
T ss_pred ccccc------------------------cCcccHHHHHhhhhh------hc-cccceeeecCccccc--cchhHHHHHH
Confidence 33332 357777765444321 11 224677777777433 2333443433
Q ss_pred cCCcc-eEEEeeeccCCCcceEEEEeCCee-EEEEeccCChhhhhhccccccccEEEEEeEEEeHHHHHHHHHhcccccc
Q 012172 239 NKNEY-CMEVTPKTLADVKGGTLISYEGKV-QLLEIAQVPDEHVNEFKSIEKFKIFNTNNLWVNLKAIKRLVEADALKME 316 (469)
Q Consensus 239 ~~~~~-~~~v~~k~~~~~~~G~iv~~~g~~-~ivEy~~~~~e~~~~~~~~~~~~~~Nt~~~~~~l~~L~~~l~~~~~~lp 316 (469)
..... .+.++.+..++..++.++..+|.. .+++....++.+ ......+++.++|+...|.+.+..
T Consensus 117 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-------~~~~~~~~~~~~~~~~~l~~~l~~------ 183 (248)
T d2oi6a2 117 AKPQGGIGLLTVKLDDPTGYGRITRENGKVTGIVEHKDATDEQ-------RQIQEINTGILIANGADMKRWLAK------ 183 (248)
T ss_dssp HCCTTSEEEEEEECSCCTTSCEEEEETTEEEEEECGGGCCTTG-------GGCCEEEEEEEEEEHHHHHHHHTT------
T ss_pred HhhccccceeEEEecCCccccccccccCccceeeeccCCChhh-------hhhhhhhhhhhccchHHHHHHHHH------
Confidence 33233 334455666778888888777765 455555444333 445678999999999999888754
Q ss_pred cccCCCcCCCcceehhHHHhhhHhhhcccceeEeecCc-cccccCCchhHHHHHHHHHHhhcC
Q 012172 317 IIPNPKEVDGIKVLQLETAAGAAIRFFDHAIGCNVHRS-RFLPVKATSDLLLVQSDLYTLADG 378 (469)
Q Consensus 317 ~~~n~K~~~g~~~iqle~~~~d~~~~~~~~~~v~v~r~-eF~pVKn~~dL~~~~~~~~~l~~g 378 (469)
+...+ ....+.++..+.-+++.-.++.++.++.+ ++.+|+|+.||..||+.++.....
T Consensus 184 -~~~~~---~~~e~~ltd~~~~~~~~g~~v~~v~~~~~~e~~gI~t~eDL~~ae~i~~~~~~~ 242 (248)
T d2oi6a2 184 -LTNNN---AQGEYYITDIIALAYQEGREIVAVHPQRLSEVEGVNNRLQLSRLERVYQSEQAE 242 (248)
T ss_dssp -CCCCS---TTCSCCTTHHHHHHHHTTCCEEEECCSSGGGGCCCSSHHHHHHHHHHHHHHHHH
T ss_pred -hhccc---cchhhhhhHHHHHHHHCCCeEEEEEcCCHHHhCCCCCHHHHHHHHHHHHHHHHH
Confidence 32222 12233445555555555456667777665 789999999999999988765443
|
| >d1g97a2 c.68.1.5 (A:2-251) N-acetylglucosamine 1-phosphate uridyltransferase GlmU, N-terminal domain {Streptococcus pneumoniae [TaxId: 1313]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Nucleotide-diphospho-sugar transferases superfamily: Nucleotide-diphospho-sugar transferases family: UDP-glucose pyrophosphorylase domain: N-acetylglucosamine 1-phosphate uridyltransferase GlmU, N-terminal domain species: Streptococcus pneumoniae [TaxId: 1313]
Probab=99.71 E-value=2.8e-16 Score=146.92 Aligned_cols=233 Identities=15% Similarity=0.164 Sum_probs=145.1
Q ss_pred EEEEcCCCCCcCCCCCCccccccCCCCchHHHHHHHHHHhhhhcCCcccEEEecCCCChHHHHHHHHHhcCCCCceEEEE
Q 012172 82 VLKLNGGLGTTMGCTGPKSVIEVRNGLTFLDLIVIQIENLNAKYGCNVPLLLMNSFNTHDDTSKIIEKYSKSNVEIHTFN 161 (469)
Q Consensus 82 vviLAGG~GTRmg~~~PK~l~~v~~gks~L~~~~~~i~~l~~~~~~~iplviMtS~~t~e~t~~~~~~~~g~~~~i~~f~ 161 (469)
+||||||.||||+.+.||+|++| .|+|||+|+++++.+.+.. .+++.|++ ..+....++.. .+.+..
T Consensus 4 AIIlAaG~GtRl~~~~PK~L~~i-~Gkpli~~~l~~l~~~~~~-----~iivv~~~-~~~~~~~~~~~------~~~~~~ 70 (250)
T d1g97a2 4 AIILAAGKGTRMKSDLPKVLHKV-AGISMLEHVFRSVGAIQPE-----KTVTVVGH-KAELVEEVLAG------QTEFVT 70 (250)
T ss_dssp EEEECCCCCGGGCCSSCGGGSEE-TTEEHHHHHHHHHGGGCCS-----EEEEEECT-THHHHHHHTTT------TSEEEE
T ss_pred EEEECCCCCCCCCCCCCceeeEE-CCeeHHHHHHHHHHHcCCC-----eEEEeccc-ccchhhhhccc------cccccc
Confidence 46899999999999999999999 9999999999999887532 34444455 55544444322 233222
Q ss_pred ecCcceecCCCCcccCCCCCCCCcccccCCCcccchhccccchHHHHHHcCCcEEEEE-eCccccccccH-HHHHHHHHc
Q 012172 162 QSQYPRLCADDFVPLPCKGKTDKDGWYPPGHGDVFPSLMNSGKLDALISQGKEYVFAA-NSDNLGAIVDL-KILNHLIQN 239 (469)
Q Consensus 162 Q~~~P~l~~~~~~~~~~~~~~~~~~~~P~GhGd~~~~L~~sg~L~~l~~~G~~~v~v~-n~DNL~~~~dp-~~Lg~~~~~ 239 (469)
+. .|.|+++..... +. .+.....+.++. +.|.+....+. .++.++...
T Consensus 71 ~~------------------------~~~g~~~~~~~a-----~~-~l~~~~~~~~~i~~~~~~~~~~~l~~l~~~~~~~ 120 (250)
T d1g97a2 71 QS------------------------EQLGTGHAVMMT-----EP-ILEGLSGHTLVIAGDTPLITGESLKNLIDFHINH 120 (250)
T ss_dssp CS------------------------SCCCHHHHHHTT-----HH-HHTTCCSEEEEEETTCTTCCHHHHHHHHHHHHHT
T ss_pred cc------------------------cccccchHHHHH-----HH-hhhcccCcceEEecCCCccCHHHHHHHHHHHhhh
Confidence 22 245555543221 12 233444444444 44546554342 345556666
Q ss_pred CCcceEEEeeeccCCCcceEEEEe-CCee-EEEEeccCChhhhhhccccccccEEEEEeEEEeHHHHHHHHHhccccccc
Q 012172 240 KNEYCMEVTPKTLADVKGGTLISY-EGKV-QLLEIAQVPDEHVNEFKSIEKFKIFNTNNLWVNLKAIKRLVEADALKMEI 317 (469)
Q Consensus 240 ~~~~~~~v~~k~~~~~~~G~iv~~-~g~~-~ivEy~~~~~e~~~~~~~~~~~~~~Nt~~~~~~l~~L~~~l~~~~~~lp~ 317 (469)
+....+.+. +...+..+|.++.. ++.+ .+.|..+.+... ....+.++|.++|+...|.+.++.
T Consensus 121 ~~~~~~~~~-~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~-------~~~~~~~~g~y~f~~~~l~~~l~~------- 185 (250)
T d1g97a2 121 KNVATILTA-ETDNPFGYGRIVRNDNAEVLRIVEQKDATDFE-------KQIKEINTGTYVFDNERLFEALKN------- 185 (250)
T ss_dssp TCSEEEEEE-ECSCCTTSCEEEECTTCCEEEEECGGGCCHHH-------HTCCEEEEEEEEEEHHHHHHHHTT-------
T ss_pred ccccccccc-eecccCCCceEEEeeceEEEEeeccccccccc-------cccceeeeeeeecchHHHHHHHHH-------
Confidence 655555444 44455667766654 3344 456666665544 556789999999999999988765
Q ss_pred ccCCCcCCCcceehhHHHhhhHhhhcccceeEeecC-ccccccCCchhHHHHHHHHHHh
Q 012172 318 IPNPKEVDGIKVLQLETAAGAAIRFFDHAIGCNVHR-SRFLPVKATSDLLLVQSDLYTL 375 (469)
Q Consensus 318 ~~n~K~~~g~~~iqle~~~~d~~~~~~~~~~v~v~r-~eF~pVKn~~dL~~~~~~~~~l 375 (469)
+...+.. + .+.++..+.-+++.-.++.++.++. +++.+|+|..||+.||+.++..
T Consensus 186 ~~~~~~~-~--~~~~~~~~~~~~~~g~~V~~~~~~~~~~~~gInt~~dL~~ae~~~~~~ 241 (250)
T d1g97a2 186 INTNNAQ-G--EYYITDVIGIFRETGEKVGAYTLKDFDESLGVNDRVALATAESVMRRR 241 (250)
T ss_dssp CCCCSTT-C--SCCGGGHHHHHHHTTCCEEEEECSSGGGGCCCSSHHHHHHHHHHHHHH
T ss_pred hccCcch-h--hHHHhHHHHHHHHCCCeEEEEEcCCcceecCCCCHHHHHHHHHHHHHH
Confidence 3332311 2 2222333333444434566777766 4889999999999999998843
|
| >d1fxoa_ c.68.1.6 (A:) RmlA (RfbA) {Pseudomonas aeruginosa [TaxId: 287]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Nucleotide-diphospho-sugar transferases superfamily: Nucleotide-diphospho-sugar transferases family: glucose-1-phosphate thymidylyltransferase domain: RmlA (RfbA) species: Pseudomonas aeruginosa [TaxId: 287]
Probab=99.55 E-value=7.2e-14 Score=136.51 Aligned_cols=233 Identities=14% Similarity=0.094 Sum_probs=153.2
Q ss_pred eEEEEcCCCCCcCC---CCCCccccccCCCCchHHHHHHHHHHhhhhcCCcccEEEecCCCChHHHHHHHHHhcCCCCce
Q 012172 81 VVLKLNGGLGTTMG---CTGPKSVIEVRNGLTFLDLIVIQIENLNAKYGCNVPLLLMNSFNTHDDTSKIIEKYSKSNVEI 157 (469)
Q Consensus 81 avviLAGG~GTRmg---~~~PK~l~~v~~gks~L~~~~~~i~~l~~~~~~~iplviMtS~~t~e~t~~~~~~~~g~~~~i 157 (469)
-+||||||+||||+ .+.||.|+|| .|+||++|.++.+...+-+ -++|.|.+..++.+++++......+.++
T Consensus 3 KavILAgG~GtRl~plT~~~pKpllpi-~gkPiI~~~l~~l~~~Gi~-----ei~ii~~~~~~~~i~~~~~~~~~~g~~I 76 (292)
T d1fxoa_ 3 KGIILAGGSGTRLHPATLAISKQLLPV-YDKPMIYYPLSTLMLAGIR-----EILIISTPQDTPRFQQLLGDGSNWGLDL 76 (292)
T ss_dssp EEEEECCCCCTTTTTHHHHSCGGGSEE-TTEETTHHHHHHHHHTTCC-----EEEEEECTTTHHHHHHHHTTSGGGTCEE
T ss_pred EEEEECCCCCCcCChhhcCCCcccCEE-CCEehHHHHHHHHHHCCCC-----EEEEEeCcCCHHHHHHHhccccccCeEE
Confidence 47999999999998 5889999999 9999999999999876522 3445567667777877776422223467
Q ss_pred EEEEecCcceecCCCCcccCCCCCCCCcccccCCCcccchhccccchHHHHHHcCCcEEEEEeCccccccccHHHHHHHH
Q 012172 158 HTFNQSQYPRLCADDFVPLPCKGKTDKDGWYPPGHGDVFPSLMNSGKLDALISQGKEYVFAANSDNLGAIVDLKILNHLI 237 (469)
Q Consensus 158 ~~f~Q~~~P~l~~~~~~~~~~~~~~~~~~~~P~GhGd~~~~L~~sg~L~~l~~~G~~~v~v~n~DNL~~~~dp~~Lg~~~ 237 (469)
++..|.. |.|+||++... .+++.. -+.++++++|++...--..+|.++.
T Consensus 77 ~y~~q~~------------------------~~Gta~ai~~a------~~~i~~-~~~~lil~dD~~~~~dl~~ll~~h~ 125 (292)
T d1fxoa_ 77 QYAVQPS------------------------PDGLAQAFLIG------ESFIGN-DLSALVLGDNLYYGHDFHELLGSAS 125 (292)
T ss_dssp EEEECSS------------------------CCCGGGHHHHT------HHHHTT-SEEEEEETTEEEECTTHHHHHHHHH
T ss_pred EEccCCC------------------------CCcHHHHHHhh------hhhcCC-CceEEEEccccccCcCHHHHHHHHH
Confidence 8777763 68999996543 234432 2355666666655542247888888
Q ss_pred HcCCcceEEEeeeccCCCcceEEEE-eCCee-EEEEeccCChhhhhhccccccccEEEEEeEEEeHHHHHHHHHhccccc
Q 012172 238 QNKNEYCMEVTPKTLADVKGGTLIS-YEGKV-QLLEIAQVPDEHVNEFKSIEKFKIFNTNNLWVNLKAIKRLVEADALKM 315 (469)
Q Consensus 238 ~~~~~~~~~v~~k~~~~~~~G~iv~-~~g~~-~ivEy~~~~~e~~~~~~~~~~~~~~Nt~~~~~~l~~L~~~l~~~~~~l 315 (469)
++++.+.+-+.+ ..+++.+|++.. .+|++ .++|-..- ..-.+.++|.|+|+-+.++.+- +
T Consensus 126 ~~~~~~~i~~~~-V~~p~~yGV~~~d~~~ki~~~~EKP~~-----------p~Snla~~G~Y~f~~~~~~~~~-~----- 187 (292)
T d1fxoa_ 126 QRQTGASVFAYH-VLDPERYGVVEFDQGGKAISLEEKPLE-----------PKSNYAVTGLYFYDQQVVDIAR-D----- 187 (292)
T ss_dssp TCCSSEEEEEEE-CSCGGGSEEEEECTTSCEEEEEESCSS-----------CSSSEEEEEEEEECTTHHHHHH-H-----
T ss_pred hCCCCcEEEEEE-CCCHHHCeEEEEcCCCCEeEEEECCCC-----------CCCCcEEEEEEEEChHHHHHHH-h-----
Confidence 888777665543 355689999966 57787 57774322 2235799999999988865432 2
Q ss_pred ccccCCCcCCCcceehhHHHhhhHhhhcccceeEeecCc-cccccCCchhHHHHHHHHHHh
Q 012172 316 EIIPNPKEVDGIKVLQLETAAGAAIRFFDHAIGCNVHRS-RFLPVKATSDLLLVQSDLYTL 375 (469)
Q Consensus 316 p~~~n~K~~~g~~~iqle~~~~d~~~~~~~~~~v~v~r~-eF~pVKn~~dL~~~~~~~~~l 375 (469)
+...+ - || +++..++...++.. +..+...+|. -+.=+.+.++|..|-..+..+
T Consensus 188 --l~~s~-r-gE--~eitD~~~~~l~~~-~~~~~~~~~~~~W~D~Gt~~~l~~a~~~v~~~ 241 (292)
T d1fxoa_ 188 --LKPSP-R-GE--LEITDVNRAYLERG-QLSVEIMGRGYAWLDTGTHDSLLEAGQFIATL 241 (292)
T ss_dssp --CCCCT-T-SS--CCHHHHHHHHHHTT-CEEEEECCTTSEEEECCSHHHHHHHHHHHHHH
T ss_pred --CCCCC-C-Cc--hhhHHHHHHHHHcC-CeEEEEeCCCCEEEeCCCHHHHHHHHHHHHHH
Confidence 11111 0 33 33344444444432 2333445665 588899999988876555443
|
| >d1lvwa_ c.68.1.6 (A:) RmlA (RfbA) {Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Nucleotide-diphospho-sugar transferases superfamily: Nucleotide-diphospho-sugar transferases family: glucose-1-phosphate thymidylyltransferase domain: RmlA (RfbA) species: Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]
Probab=99.52 E-value=3.3e-13 Score=131.57 Aligned_cols=236 Identities=14% Similarity=0.098 Sum_probs=144.4
Q ss_pred eeEEEEcCCCCCcCC---CCCCccccccCCCCchHHHHHHHHHHhhhhcCCcccEEEecCCCChHHHHHHHHHhcCCCCc
Q 012172 80 LVVLKLNGGLGTTMG---CTGPKSVIEVRNGLTFLDLIVIQIENLNAKYGCNVPLLLMNSFNTHDDTSKIIEKYSKSNVE 156 (469)
Q Consensus 80 ~avviLAGG~GTRmg---~~~PK~l~~v~~gks~L~~~~~~i~~l~~~~~~~iplviMtS~~t~e~t~~~~~~~~g~~~~ 156 (469)
+=+||||||.||||+ .+.||.|+|| .|+|||+++++++...+-+ -++|.|++...+.+++++......+.+
T Consensus 4 MkavIlagG~GtRl~p~t~~~PK~ll~i-~~kpii~~~l~~l~~~g~~-----~i~Iv~~~~~~~~~~~~~~~~~~~~~~ 77 (295)
T d1lvwa_ 4 MKGIVLAGGSGTRLYPITRAVSKQLLPI-YDKPMIYYPLSVLMLAGIR-----DILIISTPRDLPLYRDLLGDGSQFGVR 77 (295)
T ss_dssp CEEEEECCCCCSTTTTTTTSSCGGGSEE-TTEETTHHHHHHHHHTTCC-----EEEEEECTTTHHHHHHHHTTSGGGTSE
T ss_pred cEEEEECCCCcccCCcccCCCCcccCeE-CCEEHHHHHHHHHHHCCCC-----eEEEEeCcccHHHHHHHhccchhcCCE
Confidence 447899999999998 6789999999 9999999999998876522 244555665556667777542222235
Q ss_pred eEEEEecCcceecCCCCcccCCCCCCCCcccccCCCcccchhccccchHHHHHHcCCcEEEEEeCccccccccHHHHHHH
Q 012172 157 IHTFNQSQYPRLCADDFVPLPCKGKTDKDGWYPPGHGDVFPSLMNSGKLDALISQGKEYVFAANSDNLGAIVDLKILNHL 236 (469)
Q Consensus 157 i~~f~Q~~~P~l~~~~~~~~~~~~~~~~~~~~P~GhGd~~~~L~~sg~L~~l~~~G~~~v~v~n~DNL~~~~dp~~Lg~~ 236 (469)
+.++.|. .|.|+|+++.... ..+. .-+.++|+++|.+....-..++-.+
T Consensus 78 i~~v~e~------------------------~~~gta~Al~~a~------~~l~-~~~~~li~~~d~~~~~~~~~~~~~~ 126 (295)
T d1lvwa_ 78 FSYRVQE------------------------EPRGIADAFIVGK------DFIG-DSKVALVLGDNVFYGHRFSEILRRA 126 (295)
T ss_dssp EEEEECS------------------------SCCCGGGHHHHTH------HHHT-TSCEEEEETTCCEECTTHHHHHHHH
T ss_pred EEEEECC------------------------CCCCHHHHHHHHH------HHcC-CCCEEEEeCCcceechhHHHHHHHH
Confidence 6666665 2688998864322 2222 2246777777766543222344445
Q ss_pred HHcCCcceEEEeeeccCCCcceEEEE-eCCee-EEEEeccCChhhhhhccccccccEEEEEeEEEeHHHHHHHHHhcccc
Q 012172 237 IQNKNEYCMEVTPKTLADVKGGTLIS-YEGKV-QLLEIAQVPDEHVNEFKSIEKFKIFNTNNLWVNLKAIKRLVEADALK 314 (469)
Q Consensus 237 ~~~~~~~~~~v~~k~~~~~~~G~iv~-~~g~~-~ivEy~~~~~e~~~~~~~~~~~~~~Nt~~~~~~l~~L~~~l~~~~~~ 314 (469)
...+.++.+-+. ...+++.+|++.. .+|++ .++|-.+-+ .-.++|+|+|+++...+... .+
T Consensus 127 ~~~~~~~ti~~~-~~~~~~~yG~i~~~~~~~v~~~~EKp~~~-----------~s~~~~~Giy~~n~~if~~~-~~---- 189 (295)
T d1lvwa_ 127 ASLEDGAVIFGY-YVRDPRPFGVVEFDSEGRVISIEEKPSRP-----------KSNYVVPGLYFYDNQVVEIA-RR---- 189 (295)
T ss_dssp HTCCSSEEEEEE-ECSCCTTSEEEEECTTSBEEEEEESCSSC-----------SCSEECCSEEEECTTHHHHH-HH----
T ss_pred HhCCCCeEEEEE-EcCCCccccEEEECCCCcEEEEeecccCc-----------ccceeecceEEECHHHHHHH-Hh----
Confidence 555555555444 4466778999876 46676 466644322 22478999999998876433 22
Q ss_pred cccccCCCcCCCcceehhHHHhhhHhhhcccceeEeecCc-cccccCCchhHHHHHHHHHHhhc
Q 012172 315 MEIIPNPKEVDGIKVLQLETAAGAAIRFFDHAIGCNVHRS-RFLPVKATSDLLLVQSDLYTLAD 377 (469)
Q Consensus 315 lp~~~n~K~~~g~~~iqle~~~~d~~~~~~~~~~v~v~r~-eF~pVKn~~dL~~~~~~~~~l~~ 377 (469)
+.... . ++ +++...+...+..- ....-..+.. .+.-+.|.++|..+..+...++.
T Consensus 190 ---~~~~~-~-~e--~~~~~~~~~~~~~~-~~~~~~~~~~~~w~Digt~~~l~~~s~~i~~~ek 245 (295)
T d1lvwa_ 190 ---IEPSD-R-GE--LEITSVNEEYLRMG-KLRVELMGRGMAWLDTGTHDGLLEASSFIETIQK 245 (295)
T ss_dssp ---CCCCT-T-SC--CCHHHHHHHHHHTT-CEEEEEECTTCEECCCSSHHHHHHHHHHHHHHHH
T ss_pred ---cCCCc-C-CC--eeccchHHHHHHhC-CCeEEEcCCCcEEeCCCChHHHHHHHHHHHHHHH
Confidence 11111 0 22 22233333333321 1112222443 68889999999999888776654
|
| >d1mc3a_ c.68.1.6 (A:) RffH {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Nucleotide-diphospho-sugar transferases superfamily: Nucleotide-diphospho-sugar transferases family: glucose-1-phosphate thymidylyltransferase domain: RffH species: Escherichia coli [TaxId: 562]
Probab=99.51 E-value=1.6e-13 Score=133.83 Aligned_cols=232 Identities=11% Similarity=0.088 Sum_probs=146.6
Q ss_pred eEEEEcCCCCCcCC---CCCCccccccCCCCchHHHHHHHHHHhhhhcCCcccEEEecCCCChHHHHHHHHHhcCCCCce
Q 012172 81 VVLKLNGGLGTTMG---CTGPKSVIEVRNGLTFLDLIVIQIENLNAKYGCNVPLLLMNSFNTHDDTSKIIEKYSKSNVEI 157 (469)
Q Consensus 81 avviLAGG~GTRmg---~~~PK~l~~v~~gks~L~~~~~~i~~l~~~~~~~iplviMtS~~t~e~t~~~~~~~~g~~~~i 157 (469)
-+||||||.||||. ...||.|+|| .|+||+++.++++...+-+ -++|.|++...+.++++|......+.+|
T Consensus 3 kaiIlagG~GtRl~p~t~~~pK~llpi-~~kp~i~~~l~~l~~~gi~-----~i~iv~~~~~~~~~~~~~~~g~~~gi~I 76 (291)
T d1mc3a_ 3 KGIILAGGSGTRLHPITRGVSKQLLPI-YDKPMIYYPLSVLMLAGIR-----EILIITTPEDKGYFQRLLGDGSEFGIQL 76 (291)
T ss_dssp EEEEECCCCCGGGHHHHTTSCGGGSEE-TTEETTHHHHHHHHHTTCC-----EEEEEECTTTHHHHHHHHTTSGGGTCEE
T ss_pred cEEEECCcCccccchhhcCCCccccEE-CCEehHHHHHHHHHHcCCC-----EEEEEeCcccHHHHHHHhCchHhhCcEE
Confidence 37899999999998 7899999999 9999999999999887532 3334446645556666665311123568
Q ss_pred EEEEecCcceecCCCCcccCCCCCCCCcccccCCCcccchhccccchHHHHHHcCCcEEEEEeCccccccccHHHHHHHH
Q 012172 158 HTFNQSQYPRLCADDFVPLPCKGKTDKDGWYPPGHGDVFPSLMNSGKLDALISQGKEYVFAANSDNLGAIVDLKILNHLI 237 (469)
Q Consensus 158 ~~f~Q~~~P~l~~~~~~~~~~~~~~~~~~~~P~GhGd~~~~L~~sg~L~~l~~~G~~~v~v~n~DNL~~~~dp~~Lg~~~ 237 (469)
.+..|.+ |.|+||++... .+++.. -..++|+++|.+....-..++-++.
T Consensus 77 ~y~~Q~~------------------------plGta~Ai~~a------~~fi~~-~~~~lvlgddi~~~~~~~~~l~~~~ 125 (291)
T d1mc3a_ 77 EYAEQPS------------------------PDGLAQAFIIG------ETFLNG-EPSCLVLGDNIFFGQGFSPKLRHVA 125 (291)
T ss_dssp EEEECSS------------------------CCCSTHHHHHT------HHHHTT-SCEEEEETTEEEECSSCHHHHHHHT
T ss_pred EEEECCC------------------------CCchHHHHHHH------HHHhCC-CCeEEEECCCcccCcCHHHHHHHHH
Confidence 8888873 79999997432 344432 2345555555454432346677777
Q ss_pred HcCCcceEEEeeeccCCCcceEEEEe-CCeeE-EEEeccCChhhhhhccccccccEEEEEeEEEeHHHHHHHHHhccccc
Q 012172 238 QNKNEYCMEVTPKTLADVKGGTLISY-EGKVQ-LLEIAQVPDEHVNEFKSIEKFKIFNTNNLWVNLKAIKRLVEADALKM 315 (469)
Q Consensus 238 ~~~~~~~~~v~~k~~~~~~~G~iv~~-~g~~~-ivEy~~~~~e~~~~~~~~~~~~~~Nt~~~~~~l~~L~~~l~~~~~~l 315 (469)
+++.++.+-+. +..++..+|++..+ +|++. ++|-.+-| .-...|+|.|+|+-+.++.+ .+
T Consensus 126 ~~~~~atI~~~-~V~dP~~yGVve~d~~g~i~~i~EKP~~p-----------~Sn~a~~GiY~f~~~v~~~~-~~----- 187 (291)
T d1mc3a_ 126 ARTEGATVFGY-QVMDPERFGVVEFDDNFRAISLEEKPKQP-----------KSNWAVTGLYFYDSKVVEYA-KQ----- 187 (291)
T ss_dssp TCCSSEEEEEE-ECSCCSSSBBCEEETTEEEEECCBSCSSC-----------SCSEEEEEEEECCTHHHHHH-HS-----
T ss_pred hCcCCcEEEEE-ECCCcccCCCceeccCcceeEEEECCCCC-----------CCCeEEEEEEEeChHHHHHH-hc-----
Confidence 66666555444 44678899988665 56763 55543322 23578999999998776544 32
Q ss_pred ccccCCCcCCCcceehhHHHhhhHhhhcccceeEeecCc-cccccCCchhHHHHHHHHHH
Q 012172 316 EIIPNPKEVDGIKVLQLETAAGAAIRFFDHAIGCNVHRS-RFLPVKATSDLLLVQSDLYT 374 (469)
Q Consensus 316 p~~~n~K~~~g~~~iqle~~~~d~~~~~~~~~~v~v~r~-eF~pVKn~~dL~~~~~~~~~ 374 (469)
+...+ .||.. +.......++. .+.......|. .+..+=+.++|..|-.-.+.
T Consensus 188 --lk~s~--rgE~E--Itdl~~~~l~~-~~~~~~~~~~g~~W~D~Gt~~~l~~a~~~v~~ 240 (291)
T d1mc3a_ 188 --VKPSE--RGELE--ITSINQMYLEA-GNLTVELLGRGFAWLDTGTHDSLIEASTFVQT 240 (291)
T ss_dssp --CCCCS--SSSCC--HHHHHHHHHHT-TCEEEEECCTTCEEEECCSHHHHHHHHHHHHH
T ss_pred --CCCCC--CCcee--ehHHHHHHHHc-CCceEEEecCCCEEEeCCCHHHHHHHHHHHHH
Confidence 11111 14432 23333333333 22333345665 68999999998877655443
|
| >d2cu2a2 c.68.1.20 (A:1-268) Putative mannose-1-phosphate guanylyl transferase (GDP)/mannose-6-phosphate isomerase TTHA1750 {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Nucleotide-diphospho-sugar transferases superfamily: Nucleotide-diphospho-sugar transferases family: mannose-1-phosphate guanylyl transferase domain: Putative mannose-1-phosphate guanylyl transferase (GDP)/mannose-6-phosphate isomerase TTHA1750 species: Thermus thermophilus [TaxId: 274]
Probab=99.48 E-value=2.5e-13 Score=130.92 Aligned_cols=191 Identities=14% Similarity=0.088 Sum_probs=113.2
Q ss_pred cceeEEEEcCCCCCcC----CCCCCccccccCCCCchHHHHHHHHHHhhhhcCCcccEEEecCCCChHHHHHHHHHhcCC
Q 012172 78 DKLVVLKLNGGLGTTM----GCTGPKSVIEVRNGLTFLDLIVIQIENLNAKYGCNVPLLLMNSFNTHDDTSKIIEKYSKS 153 (469)
Q Consensus 78 ~k~avviLAGG~GTRm----g~~~PK~l~~v~~gks~L~~~~~~i~~l~~~~~~~iplviMtS~~t~e~t~~~~~~~~g~ 153 (469)
+|+-.||||||.|||| .++.||.|+|+.+++||||+.++++..+... . .+++-+.. .++. +.++.+.
T Consensus 1 MKi~aVILAGG~GtRL~PlS~~~~PK~ll~i~g~k~ll~~~i~rl~~~~~~---~-~i~i~~~~-~~~~----~~~~~~~ 71 (268)
T d2cu2a2 1 MKTYALVMAGGRGERLWPLSREDRPKPFLPLFEGKTLLEATLERLAPLVPP---E-RTLLAVRR-DQEA----VARPYAD 71 (268)
T ss_dssp CCEEEEEECCCCCGGGTTTCBTTBCGGGCBCGGGCBHHHHHHHHHTTTSCG---G-GEEEEEEG-GGHH----HHGGGCS
T ss_pred CCceEEEecCCCcccCCCcccCCCCceeeecCCCCCHHHHHHHHhhCcCCc---c-chhhhhhH-HHHH----Hhhhhcc
Confidence 3566789999999999 6788999999857899999999988765311 2 23333333 3333 3343332
Q ss_pred CCceEEEEecCcceecCCCCcccCCCCCCCCcccccCCCcccchhccccchHHHHHHcCCcEEEEEeCccccccccHHH-
Q 012172 154 NVEIHTFNQSQYPRLCADDFVPLPCKGKTDKDGWYPPGHGDVFPSLMNSGKLDALISQGKEYVFAANSDNLGAIVDLKI- 232 (469)
Q Consensus 154 ~~~i~~f~Q~~~P~l~~~~~~~~~~~~~~~~~~~~P~GhGd~~~~L~~sg~L~~l~~~G~~~v~v~n~DNL~~~~dp~~- 232 (469)
+ +.++.|. .|.|+|+..... +..+...+-+.++|+++|++... |..+
T Consensus 72 ~--~~ii~E~------------------------~~~~t~~a~~~~-----~~~~~~~~~~~vlvl~~D~~~~~-~~~~~ 119 (268)
T d2cu2a2 72 G--IRLLLEP------------------------LGRDTAGAVLLG-----VAEALKEGAERLLVLPADHYVGD-DEAYR 119 (268)
T ss_dssp S--SEEEEES------------------------SCCHHHHHHHHH-----HHHHHHHTCSEEEEEESSCEESC-HHHHH
T ss_pred c--cceeeee------------------------ecCCcccchhhH-----HHHHhccCCceeEEEecchhhcc-cHHHH
Confidence 2 2332222 245666653221 22344556789999999996664 2221
Q ss_pred --HHH-HHH-cCCcceEEEeeeccCCCcceEEEEeC--C-eeEEEEeccCChhhhhhccccccccEEEEEeEEEeHHHHH
Q 012172 233 --LNH-LIQ-NKNEYCMEVTPKTLADVKGGTLISYE--G-KVQLLEIAQVPDEHVNEFKSIEKFKIFNTNNLWVNLKAIK 305 (469)
Q Consensus 233 --Lg~-~~~-~~~~~~~~v~~k~~~~~~~G~iv~~~--g-~~~ivEy~~~~~e~~~~~~~~~~~~~~Nt~~~~~~l~~L~ 305 (469)
+.. ... +.....+-.+....++.+||++...+ + ..++....+=|+........... .+.|+|+|+|+.+.|.
T Consensus 120 ~~i~~~~~~~~~~~~~~~~~~~~~~~~~yG~i~~~~~~~~~~~v~~f~EKp~~~~~~~~~~~~-~~~N~Giy~f~~~~l~ 198 (268)
T d2cu2a2 120 EALATMLEAAEEGFVVALGLRPTRPETEYGYIRLGPREGAWYRGEGFVEKPSYAEALEYIRKG-YVWNGGVFAFAPATMA 198 (268)
T ss_dssp HHHHHHHHHCCTTCEEEEEECCSSCCSSSCEEEEEEEETTEEEEEEEECCCCHHHHHHHHHTT-CEEEEEEEEECHHHHH
T ss_pred HHHHHHHHHHhcCCeEeeeccccccccccceEEeccccccchhhheeecccchhhhhhhhccC-cccchhhhhcchHHHH
Confidence 111 111 22222333366677888999887632 2 23455555544433221111122 4689999999999988
Q ss_pred HHHHh
Q 012172 306 RLVEA 310 (469)
Q Consensus 306 ~~l~~ 310 (469)
+.+.+
T Consensus 199 ~~~~~ 203 (268)
T d2cu2a2 199 ELFRR 203 (268)
T ss_dssp HHHHH
T ss_pred HHHHh
Confidence 77765
|
| >d1yp2a2 c.68.1.6 (A:10-316) Glucose-1-phosphate adenylyltransferase small subunit, catalytic domain {Potato (Solanum tuberosum) [TaxId: 4113]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Nucleotide-diphospho-sugar transferases superfamily: Nucleotide-diphospho-sugar transferases family: glucose-1-phosphate thymidylyltransferase domain: Glucose-1-phosphate adenylyltransferase small subunit, catalytic domain species: Potato (Solanum tuberosum) [TaxId: 4113]
Probab=99.39 E-value=5.2e-12 Score=122.24 Aligned_cols=253 Identities=12% Similarity=0.106 Sum_probs=146.0
Q ss_pred cceeEEEEcCCCCCcCC---CCCCccccccCCC-CchHHHHHHHHHHhhhhcCCcccEEEecCCCChHHHHHHHHHhc-C
Q 012172 78 DKLVVLKLNGGLGTTMG---CTGPKSVIEVRNG-LTFLDLIVIQIENLNAKYGCNVPLLLMNSFNTHDDTSKIIEKYS-K 152 (469)
Q Consensus 78 ~k~avviLAGG~GTRmg---~~~PK~l~~v~~g-ks~L~~~~~~i~~l~~~~~~~iplviMtS~~t~e~t~~~~~~~~-g 152 (469)
+++-.||||||.||||+ .+.||.|+|| .| +||++++++++.+.+-+ .++|-+++ ..+.+.++|.... .
T Consensus 10 ~~~~AIILAaG~GtRL~plT~~~PK~llpv-~g~~plI~~~l~~l~~~gi~-----~I~Iv~~~-~~~~i~~~l~~~~~~ 82 (307)
T d1yp2a2 10 RSVLGIILGGGAGTRLYPLTKKRAKPAVPL-GANYRLIDIPVSNCLNSNIS-----KIYVLTQF-NSASLNRHLSRAYAS 82 (307)
T ss_dssp HHEEEEEC------CCTTTTTTSCGGGCEE-TTTEETTHHHHHHHHHTTCC-----EEEEEESC-CCHHHHHHHHHHCC-
T ss_pred CceEEEEECCCCcccCChhhcCCCcceEEE-CCCCCHHHHHHHHHHHcCCC-----EEEEEecc-ccccchhhhhccccc
Confidence 36788999999999999 5789999999 66 59999999999876522 34444566 6677777876532 1
Q ss_pred C-----CCceEEEEecCcceecCCCCcccCCCCCCCCcccccCCCcccchhccccchHHHHHHcCCcEEEEEeCcccccc
Q 012172 153 S-----NVEIHTFNQSQYPRLCADDFVPLPCKGKTDKDGWYPPGHGDVFPSLMNSGKLDALISQGKEYVFAANSDNLGAI 227 (469)
Q Consensus 153 ~-----~~~i~~f~Q~~~P~l~~~~~~~~~~~~~~~~~~~~P~GhGd~~~~L~~sg~L~~l~~~G~~~v~v~n~DNL~~~ 227 (469)
. ...+..+.... ........+.|+|++.... ++.+.+...+.++++++|++...
T Consensus 83 ~l~~~~~~~~~~~~~~~----------------~~~~~~~~~~g~~~ai~~~-----~~~i~~~~~~~~iv~~~D~~~~~ 141 (307)
T d1yp2a2 83 NMGGYKNEGFVEVLAAQ----------------QSPENPDWFQGTADAVRQY-----LWLFEEHTVLEYLILAGDHLYRM 141 (307)
T ss_dssp -------CCEEEEEESC----------------SSTTSCCCCCSHHHHHHHT-----HHHHTTSCCSEEEEECSCEECCC
T ss_pred ccccccccccceeecee----------------eeccccccccchhHHHHHh-----HHhhhccccceEEEecCcceecc
Confidence 0 11111111110 0012223356777764322 23444555678999999997776
Q ss_pred ccHHHHHHHHHcCCcceEEEeee-ccCCCcceEEEE-eCCee-EEEEeccCChhhhh----------hccccccccEEEE
Q 012172 228 VDLKILNHLIQNKNEYCMEVTPK-TLADVKGGTLIS-YEGKV-QLLEIAQVPDEHVN----------EFKSIEKFKIFNT 294 (469)
Q Consensus 228 ~dp~~Lg~~~~~~~~~~~~v~~k-~~~~~~~G~iv~-~~g~~-~ivEy~~~~~e~~~----------~~~~~~~~~~~Nt 294 (469)
....++..+..++.++.+..... ......+|++.. .+|++ .++|..+.+..... ...........|+
T Consensus 142 d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gvv~~d~~~~v~~~~Ek~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 221 (307)
T d1yp2a2 142 DYEKFIQAHRETDADITVAALPMDEKRATAFGLMKIDEEGRIIEFAEKPQGEQLQAMKVDTTILGLDDKRAKEMPFIASM 221 (307)
T ss_dssp CHHHHHHHHHHTTCSEEEEEEEECHHHHTTSEEEEECTTSBEEEEEESCCHHHHHHTCCCGGGGSCCHHHHHHCCEEEEE
T ss_pred chhhhhhhhhhccccceEEEEecccccccccceEEECCCCcEEEEEECCCCcccccccccccccccccchhhcccchhhC
Confidence 55677888888888876655332 334456887765 45666 46665442211000 0001123457799
Q ss_pred EeEEEeHHHHHHHHHhcccccccccCCCcCCCcceehhHHHhhhHhhhcccceeEeecCccccccCCchhHHHHHHHH
Q 012172 295 NNLWVNLKAIKRLVEADALKMEIIPNPKEVDGIKVLQLETAAGAAIRFFDHAIGCNVHRSRFLPVKATSDLLLVQSDL 372 (469)
Q Consensus 295 ~~~~~~l~~L~~~l~~~~~~lp~~~n~K~~~g~~~iqle~~~~d~~~~~~~~~~v~v~r~eF~pVKn~~dL~~~~~~~ 372 (469)
|++.|+.+.+...+... .++.+-+. ...+..++..-.++.++.++ ..+.-|.|..++..|..++
T Consensus 222 giyi~~~~~l~~~~~~~------------~~~~~~~~-~d~i~~li~~g~~v~~~~~~-g~W~Digt~~~~~~a~~~l 285 (307)
T d1yp2a2 222 GIYVISKDVMLNLLRDK------------FPGANDFG-SEVIPGATSLGMRVQAYLYD-GYWEDIGTIEAFYNANLGI 285 (307)
T ss_dssp EEEEEEHHHHHHHHHTT------------CTTCCCTT-TTHHHHHHHTTCCEEEEECC-SCCEECSSHHHHHHHHHGG
T ss_pred ceEEECHHHHHHHhhhc------------cccccchH-HHHHHHHHHCCCcEEEEEeC-CeEEECcCHHHHHHHHHHH
Confidence 99999999998887641 11111111 11222223332345555553 2578899999988877664
|
| >d1jyka_ c.68.1.13 (A:) CTP:phosphocholine cytidylytransferase LicC {Streptococcus pneumoniae [TaxId: 1313]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Nucleotide-diphospho-sugar transferases superfamily: Nucleotide-diphospho-sugar transferases family: Cytidylytransferase domain: CTP:phosphocholine cytidylytransferase LicC species: Streptococcus pneumoniae [TaxId: 1313]
Probab=99.32 E-value=1e-11 Score=114.48 Aligned_cols=220 Identities=14% Similarity=0.139 Sum_probs=119.5
Q ss_pred ceeEEEEcCCCCCcCC---CCCCccccccCCCCchHHHHHHHHHHhhhhcCCcccEEEecCCCChHHHHHHHHHhcCCCC
Q 012172 79 KLVVLKLNGGLGTTMG---CTGPKSVIEVRNGLTFLDLIVIQIENLNAKYGCNVPLLLMNSFNTHDDTSKIIEKYSKSNV 155 (469)
Q Consensus 79 k~avviLAGG~GTRmg---~~~PK~l~~v~~gks~L~~~~~~i~~l~~~~~~~iplviMtS~~t~e~t~~~~~~~~g~~~ 155 (469)
|+-+||||||.||||+ ...||.|++| .|+||++|+++.+.+.+-+ -++|.|++ ..+.+..+.+++ + .
T Consensus 3 ~mkaiIlaaG~GtRl~p~t~~~pK~ll~i-~gkpli~~~i~~l~~~g~~-----~i~iv~g~-~~e~i~~~~~~~-~--i 72 (229)
T d1jyka_ 3 RVKAIILAAGLGTRLRPLTENTPKALVQV-NQKPLIEYQIEFLKEKGIN-----DIIIIVGY-LKEQFDYLKEKY-G--V 72 (229)
T ss_dssp CCEEEEEECSCCGGGTTTTSSSCGGGCEE-TTEEHHHHHHHHHHHTTCC-----CEEEEECT-TGGGGTHHHHHH-C--C
T ss_pred ceeEEEECCCCcccCCccccCCCcceeEE-CCEEHHHHHHHHHHHhCCc-----cccccccc-chhhhhhhhhhc-c--c
Confidence 5669999999999998 5789999999 9999999999999876522 35555566 566775554443 1 2
Q ss_pred ceEEEEecCcceecCCCCcccCCCCCCCCcccccCCCcccchhccccchHHHHHHcCCcEEEEEeCcc-ccccccHHHHH
Q 012172 156 EIHTFNQSQYPRLCADDFVPLPCKGKTDKDGWYPPGHGDVFPSLMNSGKLDALISQGKEYVFAANSDN-LGAIVDLKILN 234 (469)
Q Consensus 156 ~i~~f~Q~~~P~l~~~~~~~~~~~~~~~~~~~~P~GhGd~~~~L~~sg~L~~l~~~G~~~v~v~n~DN-L~~~~dp~~Lg 234 (469)
++.+ . .++.|.|+|+...... +.+ +-.+|.+.|+ +... . +
T Consensus 73 ~i~~-~-----------------------~~~~~~Gt~~sl~~a~-----~~l-----~~~~ii~~dd~~~~~-~--~-- 113 (229)
T d1jyka_ 73 RLVF-N-----------------------DKYADYNNFYSLYLVK-----EEL-----ANSYVIDADNYLFKN-M--F-- 113 (229)
T ss_dssp EEEE-C-----------------------TTTTTSCTHHHHHTTG-----GGC-----TTEEEEETTEEESSC-C--C--
T ss_pred cccc-c-----------------------ccccccccccccccch-----hhh-----ccccccccccccccc-c--h--
Confidence 2221 1 1234677766533221 111 1234556666 4321 1 0
Q ss_pred HHHHcCCcceEEEeeeccCCCcceEEEE-eCCeeE-EEEeccCChhhhhhccccccccEEEEEeEEEeHHHHHHHHHhcc
Q 012172 235 HLIQNKNEYCMEVTPKTLADVKGGTLIS-YEGKVQ-LLEIAQVPDEHVNEFKSIEKFKIFNTNNLWVNLKAIKRLVEADA 312 (469)
Q Consensus 235 ~~~~~~~~~~~~v~~k~~~~~~~G~iv~-~~g~~~-ivEy~~~~~e~~~~~~~~~~~~~~Nt~~~~~~l~~L~~~l~~~~ 312 (469)
.+.-.....-.+.+. ++..+|.++. .++++. +.|. ..-..+++|.++++....+.+.+.
T Consensus 114 --~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~i~~~~~~--------------~~~~~~~~gi~~~~~~~~~~~~~~-- 174 (229)
T d1jyka_ 114 --RNDLTRSTYFSVYRE-DCTNEWFLVYGDDYKVQDIIVD--------------SKAGRILSGVSFWDAPTAEKIVSF-- 174 (229)
T ss_dssp --CSCCCSEEEEECEES-SCSSCCEEEECTTCBEEEEECC--------------CSSEEBCCSEEEECHHHHHHHHHH--
T ss_pred --hhhhhccccceeeee-eccccceeEEccCCceeeEEEe--------------cccceEEEEEEEEcHHHHHHHHHH--
Confidence 011111222223333 3445555554 456653 3321 122456789999987765544432
Q ss_pred cccccccCCCcCCCcceehhHHHhhhHhhhcccceeEeecCccccccCCchhHHHHHHHH
Q 012172 313 LKMEIIPNPKEVDGIKVLQLETAAGAAIRFFDHAIGCNVHRSRFLPVKATSDLLLVQSDL 372 (469)
Q Consensus 313 ~~lp~~~n~K~~~g~~~iqle~~~~d~~~~~~~~~~v~v~r~eF~pVKn~~dL~~~~~~~ 372 (469)
+..........-..++..+...+.. .++.+..+....+..|.+.+||..++..+
T Consensus 175 -----~~~~~~~~~~~~~~~~~~~~~~l~~-~~~~~~~~~~~~~~~I~t~edl~~a~~~~ 228 (229)
T d1jyka_ 175 -----IDKAYVSGEFVDLYWDNMVKDNIKE-LDVYVEELEGNSIYEIDSVQDYRKLEEIL 228 (229)
T ss_dssp -----HHHHHTTTCCTTCCTTHHHHTTGGG-CCEEEEECCTTSEEECCSHHHHHHHHHHH
T ss_pred -----HHHhhcccccchhHHHHHHHHHHHh-CCceEEEecCCCEEecCCHHHHHHHHHhh
Confidence 1100000010111223444433333 23334455656788999999999887653
|
| >d1w77a1 c.68.1.13 (A:75-300) 4-diphosphocytidyl-2C-methyl-D-erythritol (CDP-me) synthase (IspD, YgbP) {Thale cress (Arabidopsis thaliana), chloroplast [TaxId: 3702]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Nucleotide-diphospho-sugar transferases superfamily: Nucleotide-diphospho-sugar transferases family: Cytidylytransferase domain: 4-diphosphocytidyl-2C-methyl-D-erythritol (CDP-me) synthase (IspD, YgbP) species: Thale cress (Arabidopsis thaliana), chloroplast [TaxId: 3702]
Probab=99.21 E-value=5.8e-11 Score=110.58 Aligned_cols=43 Identities=23% Similarity=0.334 Sum_probs=33.6
Q ss_pred ceeEEEEcCCCCCcCCCCCCccccccCCCCchHHHHHHHHHHhh
Q 012172 79 KLVVLKLNGGLGTTMGCTGPKSVIEVRNGLTFLDLIVIQIENLN 122 (469)
Q Consensus 79 k~avviLAGG~GTRmg~~~PK~l~~v~~gks~L~~~~~~i~~l~ 122 (469)
++++||||||.|||||++.||.+++| .|+|+|+|.++.+.+..
T Consensus 4 ~i~~IIlAaG~GtRm~~~~pK~l~~l-~Gkpli~~~l~~~~~~~ 46 (226)
T d1w77a1 4 SVSVILLAGGQGKRMKMSMPKQYIPL-LGQPIALYSFFTFSRMP 46 (226)
T ss_dssp CEEEEEECCC-------CCCTTTSEE-TTEEHHHHHHHHHHTCT
T ss_pred ceEEEEeCCccCccCcCCCCceeeEE-CCeeHHHHHHHHHHhhc
Confidence 58999999999999999999999999 99999999999998774
|
| >d1vpaa_ c.68.1.13 (A:) 4-diphosphocytidyl-2C-methyl-D-erythritol (CDP-me) synthase (IspD, YgbP) {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Nucleotide-diphospho-sugar transferases superfamily: Nucleotide-diphospho-sugar transferases family: Cytidylytransferase domain: 4-diphosphocytidyl-2C-methyl-D-erythritol (CDP-me) synthase (IspD, YgbP) species: Thermotoga maritima [TaxId: 2336]
Probab=99.16 E-value=1.7e-10 Score=106.76 Aligned_cols=42 Identities=19% Similarity=0.355 Sum_probs=38.4
Q ss_pred ceeEEEEcCCCCCcCCCCCCccccccCCCCchHHHHHHHHHHhh
Q 012172 79 KLVVLKLNGGLGTTMGCTGPKSVIEVRNGLTFLDLIVIQIENLN 122 (469)
Q Consensus 79 k~avviLAGG~GTRmg~~~PK~l~~v~~gks~L~~~~~~i~~l~ 122 (469)
++ +||||||.|||||++.||.|++| .|+|+++|+++.+.+..
T Consensus 4 ~i-AIILAaG~gtRm~~~~pK~l~~i-~gkpli~~~i~~~~~~~ 45 (221)
T d1vpaa_ 4 NV-AILLAAGKGERMSENVPKQFLEI-EGRMLFEYPLSTFLKSE 45 (221)
T ss_dssp EE-EEEEECCCCGGGCCSSCGGGCEE-TTEETTHHHHHHHHHCT
T ss_pred eE-EEEccCcCcccCCCCCCcceeEE-CCEEHHHHHHHHHHhcc
Confidence 45 47999999999999999999999 99999999999998864
|
| >d1tzfa_ c.68.1.13 (A:) Glucose-1-phosphate cytidylyltransferase RfbF {Salmonella typhimurium [TaxId: 90371]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Nucleotide-diphospho-sugar transferases superfamily: Nucleotide-diphospho-sugar transferases family: Cytidylytransferase domain: Glucose-1-phosphate cytidylyltransferase RfbF species: Salmonella typhimurium [TaxId: 90371]
Probab=99.16 E-value=1.4e-10 Score=108.22 Aligned_cols=238 Identities=13% Similarity=0.098 Sum_probs=126.0
Q ss_pred EEEEcCCCCCcCC---CCCCccccccCCCCchHHHHHHHHHHhhhhcCCcccEEEecCCCChHHHHHHHHHhcCCCCceE
Q 012172 82 VLKLNGGLGTTMG---CTGPKSVIEVRNGLTFLDLIVIQIENLNAKYGCNVPLLLMNSFNTHDDTSKIIEKYSKSNVEIH 158 (469)
Q Consensus 82 vviLAGG~GTRmg---~~~PK~l~~v~~gks~L~~~~~~i~~l~~~~~~~iplviMtS~~t~e~t~~~~~~~~g~~~~i~ 158 (469)
+||||||.||||+ .+.||+|+|| .|+|+++|+++++.+.+-+ +|.++ |++ ..+.++++|.........+.
T Consensus 5 AiILAAG~GtRl~~lT~~~PK~Ll~i-~gkplI~~~i~~l~~~gi~---~i~iv--~gy-~~~~i~~~~~~~~~~~~~i~ 77 (259)
T d1tzfa_ 5 AVILAGGLGTRLSEETIVKPKPMVEI-GGKPILWHIMKMYSVHGIK---DFIIC--CGY-KGYVIKEYFANYFLHMSDVT 77 (259)
T ss_dssp EEEEECSCC--------CCCGGGCEE-TTEEHHHHHHHHHHHTTCC---EEEEE--ECT-THHHHHHHHHTHHHHHSCEE
T ss_pred EEEECCCccccCChhhCCCCccceEE-CCEEHHHHHHHHHHHcCCC---eeeec--cch-hHHHHHHHHhcchhcccccc
Confidence 7999999999999 7889999999 9999999999999987633 34444 355 88999999875221000111
Q ss_pred EEEecCcceec----CCC-CcccCCCCCCCCcccccCCCcccchhccccchHHHHHHcCCcEEEEEeCccccccccHHHH
Q 012172 159 TFNQSQYPRLC----ADD-FVPLPCKGKTDKDGWYPPGHGDVFPSLMNSGKLDALISQGKEYVFAANSDNLGAIVDLKIL 233 (469)
Q Consensus 159 ~f~Q~~~P~l~----~~~-~~~~~~~~~~~~~~~~P~GhGd~~~~L~~sg~L~~l~~~G~~~v~v~n~DNL~~~~dp~~L 233 (469)
........... ... ...+ .+-.+.|+++....+... ...-+.+++.++|++.......++
T Consensus 78 ~~~~~~~~~~~~~~~~~~~~~~~--------~~~~~~~~~~~~~~~~~~-------~~~~~~~~~~~~d~~~~~~~~~~~ 142 (259)
T d1tzfa_ 78 FHMAENRMEVHHKRVEPWNVTLV--------DTGDSSMTGGRLKRVAEY-------VKDDEAFLFTYGDGVADLDIKATI 142 (259)
T ss_dssp EEGGGTEEEETTCCCCCCEEEEE--------ECCSSCCHHHHHHHTGGG-------TTTSSCEEEEETTEEECCCHHHHH
T ss_pred chhccccchhhhccccccceeEE--------eccccccccchhhhhhhh-------ccCCCceEEeccccccccchhhhh
Confidence 11111000000 000 0011 111244455443322211 112367889999997665444556
Q ss_pred HHHHHcCCcceEEEeeeccCCCcceEEEEeCCeeE-EEEeccCChhhhhhccccccccEEEEEeEEEeHHHHHHHHHhcc
Q 012172 234 NHLIQNKNEYCMEVTPKTLADVKGGTLISYEGKVQ-LLEIAQVPDEHVNEFKSIEKFKIFNTNNLWVNLKAIKRLVEADA 312 (469)
Q Consensus 234 g~~~~~~~~~~~~v~~k~~~~~~~G~iv~~~g~~~-ivEy~~~~~e~~~~~~~~~~~~~~Nt~~~~~~l~~L~~~l~~~~ 312 (469)
.++......+....+ .+...+|.+....++.. ..+..+. ....+++|.++++-+..+.
T Consensus 143 ~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~i~~~~~~~~~------------~~~~~~~G~y~~~~~~~~~------ 201 (259)
T d1tzfa_ 143 DFHKAHGKKATLTAT---FPPGRFGALDIQAGQVRSFQEKPKG------------DGAMINGGFFVLNPSVIDL------ 201 (259)
T ss_dssp HHHHHHCCSEEEEEE---CCCCCSEEEEEETTEEEEEEESCSC------------CSCCEECCCEEECGGGGGG------
T ss_pred hhhcccccceeeccc---cccccCCceecccceEEeeeecccc------------ceeeecceeccccchhhhh------
Confidence 666655555544433 34455676666556553 3332221 2235788999888553221
Q ss_pred cccccccCCCcCCCcceehhHHHhhhHhhhcccceeEeecCccccccCCchhHHHHHHHHHHh
Q 012172 313 LKMEIIPNPKEVDGIKVLQLETAAGAAIRFFDHAIGCNVHRSRFLPVKATSDLLLVQSDLYTL 375 (469)
Q Consensus 313 ~~lp~~~n~K~~~g~~~iqle~~~~d~~~~~~~~~~v~v~r~eF~pVKn~~dL~~~~~~~~~l 375 (469)
+ ..+...-+ ...+..+++. .++.++.++. .+.-|.|..|+..+++.+..-
T Consensus 202 -----i-~~~~~~~~-----~~~l~~l~~~-~~v~~~~~~g-~W~didt~~d~~~~~~~~~~~ 251 (259)
T d1tzfa_ 202 -----I-DNDATTWE-----QEPLMTLAQQ-GELMAFEHPG-FWQPMDTLRDKVYLEGLWEKG 251 (259)
T ss_dssp -----C-CSTTCCTT-----THHHHHHHHT-TCEEEEEECS-CEEECCSHHHHHHHHHHHHTT
T ss_pred -----c-ccCcCccH-----HHHHHHHHhc-CCeEEEEeCC-EEEECCCHHHHHHHHHHHHcC
Confidence 1 11111000 1122223333 2444555533 467799999999888877644
|
| >d1i52a_ c.68.1.13 (A:) 4-diphosphocytidyl-2C-methyl-D-erythritol (CDP-me) synthase (IspD, YgbP) {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Nucleotide-diphospho-sugar transferases superfamily: Nucleotide-diphospho-sugar transferases family: Cytidylytransferase domain: 4-diphosphocytidyl-2C-methyl-D-erythritol (CDP-me) synthase (IspD, YgbP) species: Escherichia coli [TaxId: 562]
Probab=99.15 E-value=2.4e-10 Score=105.41 Aligned_cols=44 Identities=18% Similarity=0.240 Sum_probs=41.2
Q ss_pred cceeEEEEcCCCCCcCCCCCCccccccCCCCchHHHHHHHHHHhh
Q 012172 78 DKLVVLKLNGGLGTTMGCTGPKSVIEVRNGLTFLDLIVIQIENLN 122 (469)
Q Consensus 78 ~k~avviLAGG~GTRmg~~~PK~l~~v~~gks~L~~~~~~i~~l~ 122 (469)
+++++||||||.|||||++.||+|++| +|+|||+|+++.+.+..
T Consensus 2 M~i~AIILAaG~gtRm~~~~pK~L~~i-~gkplI~~~i~~~~~~~ 45 (225)
T d1i52a_ 2 LDVCAVVPAAGFGRRMQTECPKQYLSI-GNQTILEHSVHALLAHP 45 (225)
T ss_dssp CCEEEEEEECCCCGGGCCSSCGGGSEE-TTEEHHHHHHHHHHTST
T ss_pred CCEEEEEeCCCcceeCCCCCCcceeEE-CCEEHHHHHHHHHHhCc
Confidence 478999999999999999999999999 99999999999998764
|
| >d1vgwa_ c.68.1.13 (A:) 4-diphosphocytidyl-2C-methyl-D-erythritol (CDP-me) synthase (IspD, YgbP) {Neisseria gonorrhoeae [TaxId: 485]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Nucleotide-diphospho-sugar transferases superfamily: Nucleotide-diphospho-sugar transferases family: Cytidylytransferase domain: 4-diphosphocytidyl-2C-methyl-D-erythritol (CDP-me) synthase (IspD, YgbP) species: Neisseria gonorrhoeae [TaxId: 485]
Probab=99.09 E-value=1.6e-09 Score=100.45 Aligned_cols=44 Identities=25% Similarity=0.414 Sum_probs=30.7
Q ss_pred cceeEEEEcCCCCCcCCCCCCccccccCCCCchHHHHHHHHHHhh
Q 012172 78 DKLVVLKLNGGLGTTMGCTGPKSVIEVRNGLTFLDLIVIQIENLN 122 (469)
Q Consensus 78 ~k~avviLAGG~GTRmg~~~PK~l~~v~~gks~L~~~~~~i~~l~ 122 (469)
+|..+||||||.|||||++.||.|+++ .|+|+++|.++.+++..
T Consensus 2 ~K~iAIIlAaG~gtRm~~~~pK~l~~i-~gkpli~~~i~~~~~~~ 45 (226)
T d1vgwa_ 2 RKNIALIPAAGIGVRFGADKPKQYVEI-GSKTVLEHVLGIFERHE 45 (226)
T ss_dssp CCEEEEEECC----------CCSCCEE-TTEEHHHHHHHHHHTCT
T ss_pred CceEEEEeCCCCcccCCcCCCeeeeEE-CCEEHHHHHHHHHHhCC
Confidence 366778999999999999999999999 99999999999998875
|
| >d1fxja1 b.81.1.4 (A:252-329) N-acetylglucosamine 1-phosphate uridyltransferase GlmU, C-terminal domain {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Single-stranded left-handed beta-helix superfamily: Trimeric LpxA-like enzymes family: GlmU C-terminal domain-like domain: N-acetylglucosamine 1-phosphate uridyltransferase GlmU, C-terminal domain species: Escherichia coli [TaxId: 562]
Probab=98.60 E-value=1.5e-08 Score=78.83 Aligned_cols=73 Identities=19% Similarity=0.339 Sum_probs=61.8
Q ss_pred eeecCCccCCCCCeEEECCCcccccccccccccCCcccccCceEEEeeEEECCCcEEeeeEEEE-ecCCCceeeCCCCee
Q 012172 380 VTRNEARKNPANPTIELGPEFKKVGNFLSRFKSIPSIIELDSLKVTGDVWFGANITLKGKVTIA-AKSGEKLEIPDGAVL 458 (469)
Q Consensus 380 l~~~~~r~~~~~p~V~l~~~~~~~~~~~~~i~~~p~~~~~~~l~v~G~v~fg~~V~i~g~~~I~-~~~~~~~~I~~~s~l 458 (469)
++.+|+|+ ...+.|.++++.. |. .+++++|++++|+||+|+.+|+|+ +..++.+.|.++|+|
T Consensus 2 ~~~dP~~~-~I~g~v~IG~~~~--------I~--------~~~~i~g~~~IG~~v~Ig~~~~i~~~~Ig~~~~I~~~s~i 64 (78)
T d1fxja1 2 MLRDPARF-DLRGTLTHGRDVE--------ID--------TNVIIEGNVTLGHRVKIGTGCVIKNSVIGDDCEISPYTVV 64 (78)
T ss_dssp EESCGGGE-EEEEEEEECSSCE--------EC--------TTEEEEEEEEECTTCEECTTCEEESCEECTTCEECTTCEE
T ss_pred EEECCCeE-EEeccEEECCCCE--------EC--------CccEEeCCcEECCCCEECCCeEEecCEECCCCEEcCCcEE
Confidence 56778876 3556788887766 63 799999999999999999999999 557888999999999
Q ss_pred ecceecCCCCC
Q 012172 459 ENKEINGPGDL 469 (469)
Q Consensus 459 e~~~v~~~~~~ 469 (469)
|+++|+.+..|
T Consensus 65 ~~~~Ig~~~~I 75 (78)
T d1fxja1 65 EDANLAAACTI 75 (78)
T ss_dssp ESEEECTTCEE
T ss_pred ECCEECCCCEE
Confidence 99999998754
|
| >d1w55a1 c.68.1.13 (A:3-207) IspD/IspF bifunctional enzyme, CDP-me synthase domain {Campylobacter jejuni [TaxId: 197]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Nucleotide-diphospho-sugar transferases superfamily: Nucleotide-diphospho-sugar transferases family: Cytidylytransferase domain: IspD/IspF bifunctional enzyme, CDP-me synthase domain species: Campylobacter jejuni [TaxId: 197]
Probab=98.60 E-value=1.9e-08 Score=92.42 Aligned_cols=43 Identities=9% Similarity=0.152 Sum_probs=39.9
Q ss_pred ceeEEEEcCCCCCcCCCCCCccccccCCCCchHHHHHHHHHHhh
Q 012172 79 KLVVLKLNGGLGTTMGCTGPKSVIEVRNGLTFLDLIVIQIENLN 122 (469)
Q Consensus 79 k~avviLAGG~GTRmg~~~PK~l~~v~~gks~L~~~~~~i~~l~ 122 (469)
.+++|+||||.|||||++.||.++++ .|+|+++|.++.+....
T Consensus 1 ~is~IILAaG~g~Rmg~~~pK~~~~i-~gkpii~~~l~~~~~~~ 43 (205)
T d1w55a1 1 EMSLIMLAAGNSTRFNTKVKKQFLRL-GNDPLWLYATKNLSSFY 43 (205)
T ss_dssp CEEEEEECCSCCTTTCSSSCGGGCEE-BTEEHHHHHHHHHHTTS
T ss_pred CeEEEEeCCccCeeCCcCCCceeEEE-CCEEHHHHHHHHHHhhc
Confidence 36899999999999999999999999 99999999999988764
|
| >d1e5ka_ c.68.1.8 (A:) Molybdenum cofactor biosynthesis protein MobA {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Nucleotide-diphospho-sugar transferases superfamily: Nucleotide-diphospho-sugar transferases family: Molybdenum cofactor biosynthesis protein MobA domain: Molybdenum cofactor biosynthesis protein MobA species: Escherichia coli [TaxId: 562]
Probab=98.52 E-value=3.2e-07 Score=81.32 Aligned_cols=41 Identities=22% Similarity=0.332 Sum_probs=36.8
Q ss_pred ceeEEEEcCCCCCcCCCCCCccccccCCCCchHHHHHHHHHHh
Q 012172 79 KLVVLKLNGGLGTTMGCTGPKSVIEVRNGLTFLDLIVIQIENL 121 (469)
Q Consensus 79 k~avviLAGG~GTRmg~~~PK~l~~v~~gks~L~~~~~~i~~l 121 (469)
.++.||||||+|||||. .||.++++ .|+|||+|+++.+...
T Consensus 3 ~i~~iILAgG~ssRmG~-~~K~ll~~-~g~~ll~~~l~~l~~~ 43 (188)
T d1e5ka_ 3 TITGVVLAGGKARRMGG-VDKGLLEL-NGKPLWQHVADALMTQ 43 (188)
T ss_dssp SEEEEEECCCCCSSSCS-SCGGGSEE-TTEEHHHHHHHHHHHH
T ss_pred ceeEEEEcCCCCcCCCC-CCcccCEE-CCEehhHHHHhhhccc
Confidence 57899999999999995 48999999 9999999999887664
|
| >d1h7ea_ c.68.1.13 (A:) CMP:2-keto-3-deoxy-manno-octonic acid (CMP-KDO)synthetase {Escherichia coli, KpsU [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Nucleotide-diphospho-sugar transferases superfamily: Nucleotide-diphospho-sugar transferases family: Cytidylytransferase domain: CMP:2-keto-3-deoxy-manno-octonic acid (CMP-KDO)synthetase species: Escherichia coli, KpsU [TaxId: 562]
Probab=98.18 E-value=0.00021 Score=65.02 Aligned_cols=229 Identities=9% Similarity=0.042 Sum_probs=117.7
Q ss_pred cceeEEEEcCCCCCcCCCCC-C-ccccccCCCCchHHHHHHHHHHhhhhcCCcccEEEecCCCChHHHHHHHHHhcCCCC
Q 012172 78 DKLVVLKLNGGLGTTMGCTG-P-KSVIEVRNGLTFLDLIVIQIENLNAKYGCNVPLLLMNSFNTHDDTSKIIEKYSKSNV 155 (469)
Q Consensus 78 ~k~avviLAGG~GTRmg~~~-P-K~l~~v~~gks~L~~~~~~i~~l~~~~~~~iplviMtS~~t~e~t~~~~~~~~g~~~ 155 (469)
+|..+||+| ||||+. | |.++++ .|+||++|++++++.... +--++.+++ ++.+....+.+.
T Consensus 1 ~k~i~iIpA-----R~~SkRl~~Knl~~i-~GkPli~~~i~~a~~~~~-----~d~Iiv~td--~~~i~~~~~~~~---- 63 (245)
T d1h7ea_ 1 SKAVIVIPA-----RYGSSRLPGKPLLDI-VGKPMIQHVYERALQVAG-----VAEVWVATD--DPRVEQAVQAFG---- 63 (245)
T ss_dssp CCEEEEEEC-----CSCCSSSTTGGGCEE-TTEEHHHHHHHHHHTCTT-----CCEEEEEES--CHHHHHHHHHTT----
T ss_pred CCEEEEEcC-----CCCCcCCCCcccccc-CCccHHHHHHHHHHhCCC-----CCeEEEecc--cccchhhhhhcC----
Confidence 377899999 666653 5 999999 999999999999988752 333333333 555655555542
Q ss_pred ceEEEEecCcceecCCCCcccCCCCCCCCcccccCCCcccchhccccchHHHHHHcCCcEEEEEeCcc-ccccccH-HHH
Q 012172 156 EIHTFNQSQYPRLCADDFVPLPCKGKTDKDGWYPPGHGDVFPSLMNSGKLDALISQGKEYVFAANSDN-LGAIVDL-KIL 233 (469)
Q Consensus 156 ~i~~f~Q~~~P~l~~~~~~~~~~~~~~~~~~~~P~GhGd~~~~L~~sg~L~~l~~~G~~~v~v~n~DN-L~~~~dp-~~L 233 (469)
+.+..+. .-+.+.. ...++.+.....++++.+++|. +....+. .++
T Consensus 64 -~~~~~~~--------------------------~~~~~~~-----~~~~~~~~~~~~d~vv~l~~~~p~~~~~~i~~~~ 111 (245)
T d1h7ea_ 64 -GKAIMTR--------------------------NDHESGT-----DRLVEVMHKVEADIYINLQGDEPMIRPRDVETLL 111 (245)
T ss_dssp -CEEEECC--------------------------SCCSSHH-----HHHHHHHHHSCCSEEEECCTTCTTCCHHHHHHHH
T ss_pred -ceEEEec--------------------------Ccccccc-----HHHHHHHHhcCCCEEEEecchhhhcccccchhhh
Confidence 1222221 0022221 1224455555678999999999 6554332 233
Q ss_pred HHHHHcCCcceEEEeeecc----CCCcceEEEEeCCeeEEEEeccCChhhhhhccccccccEEEEEeEEEeHHHHHHHHH
Q 012172 234 NHLIQNKNEYCMEVTPKTL----ADVKGGTLISYEGKVQLLEIAQVPDEHVNEFKSIEKFKIFNTNNLWVNLKAIKRLVE 309 (469)
Q Consensus 234 g~~~~~~~~~~~~v~~k~~----~~~~~G~iv~~~g~~~ivEy~~~~~e~~~~~~~~~~~~~~Nt~~~~~~l~~L~~~l~ 309 (469)
..+..........+..... ................+.......... .+........+.|.++++.++|++...
T Consensus 112 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~vk~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~g~~~~~~~~l~~~~~ 188 (245)
T d1h7ea_ 112 QGMRDDPALPVATLCHAISAAEAAEPSTVKVVVNTRQDALYFSRSPIPYP---RNAEKARYLKHVGIYAYRRDVLQNYSQ 188 (245)
T ss_dssp HHHHHCTTCCEEEEEEEECHHHHTCTTSCEEEECTTCBEEEEESSCSSCC---TTGGGCCEEEEEEEEEEEHHHHHHGGG
T ss_pred hcccccccccccccccccccccccCCcceeeccchhhhhhhhhhhhhhhh---hcccccccceeeeeEEeeecccccccc
Confidence 4444333333222211111 111111112111111122221111110 111245567799999999999887643
Q ss_pred hcccccccccCCCcCCCcc--eehhHHHhhhHhhhcccceeEeecCccccccCCchhHHHHHHHHHH
Q 012172 310 ADALKMEIIPNPKEVDGIK--VLQLETAAGAAIRFFDHAIGCNVHRSRFLPVKATSDLLLVQSDLYT 374 (469)
Q Consensus 310 ~~~~~lp~~~n~K~~~g~~--~iqle~~~~d~~~~~~~~~~v~v~r~eF~pVKn~~dL~~~~~~~~~ 374 (469)
- . + ++. .-.+|.. .++..--++.++.++ .+...|++..||..||..+..
T Consensus 189 ~--------~--~---s~~e~~e~ie~l--r~l~ng~~I~~~~~~-~~~~~IDt~~Dl~~a~~il~~ 239 (245)
T d1h7ea_ 189 L--------P--E---SMPEQAESLEQL--RLMNAGINIRTFEVA-ATGPGVDTPACLEKVRALMAQ 239 (245)
T ss_dssp S--------C--C---CHHHHHHTCTTH--HHHHTTCCEEEEECC-CCCCCSSSHHHHHHHHHHHHH
T ss_pred c--------c--C---ChhhhhhhHHHH--HHHHCCCeEEEEEeC-CCCCCCCCHHHHHHHHHHHHh
Confidence 1 0 0 110 1111210 122222334445554 355589999999999888753
|
| >d1vh1a_ c.68.1.13 (A:) CMP:2-keto-3-deoxy-manno-octonic acid (CMP-KDO)synthetase {Escherichia coli, KdsB [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Nucleotide-diphospho-sugar transferases superfamily: Nucleotide-diphospho-sugar transferases family: Cytidylytransferase domain: CMP:2-keto-3-deoxy-manno-octonic acid (CMP-KDO)synthetase species: Escherichia coli, KdsB [TaxId: 562]
Probab=98.05 E-value=4.5e-05 Score=69.99 Aligned_cols=231 Identities=13% Similarity=0.156 Sum_probs=125.3
Q ss_pred eEEEEcCCCCCcCCCCC-C-ccccccCCCCchHHHHHHHHHHhhhhcCCcccEEEecCCCChHHHHHHHHHhcCCCCceE
Q 012172 81 VVLKLNGGLGTTMGCTG-P-KSVIEVRNGLTFLDLIVIQIENLNAKYGCNVPLLLMNSFNTHDDTSKIIEKYSKSNVEIH 158 (469)
Q Consensus 81 avviLAGG~GTRmg~~~-P-K~l~~v~~gks~L~~~~~~i~~l~~~~~~~iplviMtS~~t~e~t~~~~~~~~g~~~~i~ 158 (469)
.+||.| ||||.+ | |.|+++ +|+||++|++++++..+- =.+++-| .++.+.++.+++. .++.
T Consensus 3 i~iIpA-----R~gSkrip~KnL~~i-~GkpLI~~~i~~a~~s~i-----~~iiVsT---d~~~i~~~~~~~g---~~v~ 65 (246)
T d1vh1a_ 3 VVIIPA-----RYASTRLPGKPLVDI-NGKPMIVHVLERARESGA-----ERIIVAT---DHEDVARAVEAAG---GEVC 65 (246)
T ss_dssp EEEEEC-----CCCCC--CCTTTCEE-TTEEHHHHHHHHHHHTTC-----SEEEEEE---SCHHHHHHHHHTT---CEEE
T ss_pred EEEEec-----CCCCcCCCCchhhhc-CCccHHHHHHHHHHHcCC-----CcEEEEe---cCccccchhhccc---ccce
Confidence 577888 788774 8 999999 999999999999987531 2566644 4677777777652 2343
Q ss_pred EEEecCcceecCCCCcccCCCCCCCCcccccCCCcccchhccccchHHHHHHcCCcEEEEEeCcc-ccccccH-HHHHHH
Q 012172 159 TFNQSQYPRLCADDFVPLPCKGKTDKDGWYPPGHGDVFPSLMNSGKLDALISQGKEYVFAANSDN-LGAIVDL-KILNHL 236 (469)
Q Consensus 159 ~f~Q~~~P~l~~~~~~~~~~~~~~~~~~~~P~GhGd~~~~L~~sg~L~~l~~~G~~~v~v~n~DN-L~~~~dp-~~Lg~~ 236 (469)
+..+.. ..|+..+..+ +..+.....++++..++|. |....++ .++-.+
T Consensus 66 ~~~~~~------------------------~~~~~~~~~~------~~~~~~~~~~~i~~~~~d~pl~~~~~i~~~i~~~ 115 (246)
T d1vh1a_ 66 MTRADH------------------------QSGTERLAEV------VEKCAFSDDTVIVNVQGDEPMIPATIIRQVADNL 115 (246)
T ss_dssp ECC-----------------------------CHHHHHHH------HHHTTCCTTCEEEECCTTCTTCCHHHHHHHHHHH
T ss_pred eecccc------------------------cccchHHHHH------HHhhcccccceeeeeccccccchhhHHHHHhhhh
Confidence 322221 1122222111 1222223456899999999 7665554 334555
Q ss_pred HHcCCcceEEEeeeccCCC----cce-EEEEeCCeeEEEEeccCChhhhhh---ccccccccEEEEEeEEEeHHHHHHHH
Q 012172 237 IQNKNEYCMEVTPKTLADV----KGG-TLISYEGKVQLLEIAQVPDEHVNE---FKSIEKFKIFNTNNLWVNLKAIKRLV 308 (469)
Q Consensus 237 ~~~~~~~~~~v~~k~~~~~----~~G-~iv~~~g~~~ivEy~~~~~e~~~~---~~~~~~~~~~Nt~~~~~~l~~L~~~l 308 (469)
.....+....++....... ... .+...+|.....-....+...... +......-+-|.|+|+|+.+.|.+..
T Consensus 116 ~~~~~~~~~~~~~~~~~~~~~~~~~vk~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~giy~~~~~~l~~~~ 195 (246)
T d1vh1a_ 116 AQRQVGMATLAVPIHNAEEAFNPNAVKVVLDAEGYALYFSRATIPWDRDRFAEGLETVGDNFLRHLGIYGYRAGFIRRYV 195 (246)
T ss_dssp HHSSSSEEEEEEECCCHHHHTCTTSCEEEECTTSBEEEEESSCSSCCHHHHSSCCCCCCSCCEEEEEEEEEEHHHHHHHH
T ss_pred cccccccccccccccchhcccCCCcceeeecccCcccccccccchhhhhhhhhhhhccchhhheecceeeechhhhhhhc
Confidence 5566666555554432211 111 222234554322222222211111 11112233458999999999998775
Q ss_pred HhcccccccccCCCcCCCcceehhHHHhhhHhhhcccceeEeecCccccccCCchhHHHHHHH
Q 012172 309 EADALKMEIIPNPKEVDGIKVLQLETAAGAAIRFFDHAIGCNVHRSRFLPVKATSDLLLVQSD 371 (469)
Q Consensus 309 ~~~~~~lp~~~n~K~~~g~~~iqle~~~~d~~~~~~~~~~v~v~r~eF~pVKn~~dL~~~~~~ 371 (469)
.-. ..+ -|..-.+|+. -++....++.++.++..+-..|.+..||..||..
T Consensus 196 ~~~--------~s~---~E~~e~le~l--R~i~~g~~i~~~~~~~~~~~~IDt~~Dl~~a~k~ 245 (246)
T d1vh1a_ 196 NWQ--------PSP---LEHIEMLEQL--RVLWYGEKIHVAVAQEVPGTGVDTPEDLERVRAE 245 (246)
T ss_dssp HSC--------CCH---HHHHHTCTTH--HHHHTTCCEEEEECSSCCCCCCCSHHHHHHHHHH
T ss_pred cCC--------CCh---HHHHHhHHHH--HHHHCCCceEEEEecCCCCCCCCCHHHHHHHHhc
Confidence 420 000 0111112211 1122334455667777777899999999999875
|
| >d2dpwa1 c.68.1.19 (A:1-231) Uncharacterized protein TTHA0179 {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Nucleotide-diphospho-sugar transferases superfamily: Nucleotide-diphospho-sugar transferases family: TTHA0179-like domain: Uncharacterized protein TTHA0179 species: Thermus thermophilus [TaxId: 274]
Probab=98.04 E-value=1.6e-06 Score=79.57 Aligned_cols=44 Identities=14% Similarity=0.237 Sum_probs=37.4
Q ss_pred cceeEEEEcCCCCCcCC-CC-CCccccccCCCCchHHHHHHHHHHhh
Q 012172 78 DKLVVLKLNGGLGTTMG-CT-GPKSVIEVRNGLTFLDLIVIQIENLN 122 (469)
Q Consensus 78 ~k~avviLAGG~GTRmg-~~-~PK~l~~v~~gks~L~~~~~~i~~l~ 122 (469)
+|.+.||||||+||||. +. .||.|+++ .|+|||+|+++++...+
T Consensus 1 M~~~avIlA~G~~~r~~r~g~~~K~L~~i-~Gkpli~~~~~~l~~~~ 46 (231)
T d2dpwa1 1 MRPSAIVLAGGKEAWAERFGVGSKALVPY-RGRPMVEWVLEALYAAG 46 (231)
T ss_dssp CCCEEEEECCCBCSGGGTTTCSBGGGSEE-TTEETHHHHHHHHHHTT
T ss_pred CCceEEEECCCCCCCCCCCCCCCceeeEE-CCeeHHHHHHHHHHhcC
Confidence 36789999999999884 23 36999999 99999999999987764
|
| >d1vica_ c.68.1.13 (A:) CMP:2-keto-3-deoxy-manno-octonic acid (CMP-KDO)synthetase {Haemophilus influenzae [TaxId: 727]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Nucleotide-diphospho-sugar transferases superfamily: Nucleotide-diphospho-sugar transferases family: Cytidylytransferase domain: CMP:2-keto-3-deoxy-manno-octonic acid (CMP-KDO)synthetase species: Haemophilus influenzae [TaxId: 727]
Probab=98.00 E-value=0.00021 Score=65.46 Aligned_cols=234 Identities=11% Similarity=0.084 Sum_probs=123.8
Q ss_pred eeEEEEcCCCCCcCCCC-CC-ccccccCCCCchHHHHHHHHHHhhhhcCCcccEEEecCCCChHHHHHHHHHhcCCCCce
Q 012172 80 LVVLKLNGGLGTTMGCT-GP-KSVIEVRNGLTFLDLIVIQIENLNAKYGCNVPLLLMNSFNTHDDTSKIIEKYSKSNVEI 157 (469)
Q Consensus 80 ~avviLAGG~GTRmg~~-~P-K~l~~v~~gks~L~~~~~~i~~l~~~~~~~iplviMtS~~t~e~t~~~~~~~~g~~~~i 157 (469)
..+||+| ||||+ .| |.++++ +|+||++|.++++++.+ .+ .+++-| .++++.+..++|. ..+
T Consensus 2 ~~~iIpA-----R~gSkRlp~Knl~~i-~GkpLI~~~i~~a~~s~----i~-~IiVsT---d~~~i~~~~~~~~---~~~ 64 (255)
T d1vica_ 2 FTVIIPA-----RFASSRLPGKPLADI-KGKPMIQHVFEKALQSG----AS-RVIIAT---DNENVADVAKSFG---AEV 64 (255)
T ss_dssp CEEEEEC-----CCCCSSSTTGGGCEE-TTEEHHHHHHHHHHHTT----CS-EEEEEE---SCHHHHHHHHHTT---CEE
T ss_pred EEEEEec-----CCCCCCCCCchhhhh-CCcCHHHHHHHHHHHCC----CC-eEEEEc---CCcccchhhhhhc---ccc
Confidence 3578898 88876 47 999999 99999999999997753 12 445544 3556666666642 123
Q ss_pred EEEEecCcceecCCCCcccCCCCCCCCcccccCCCcccchhccccchHHHHHHcCCcEEEEEeCcc-ccccccHH-HHHH
Q 012172 158 HTFNQSQYPRLCADDFVPLPCKGKTDKDGWYPPGHGDVFPSLMNSGKLDALISQGKEYVFAANSDN-LGAIVDLK-ILNH 235 (469)
Q Consensus 158 ~~f~Q~~~P~l~~~~~~~~~~~~~~~~~~~~P~GhGd~~~~L~~sg~L~~l~~~G~~~v~v~n~DN-L~~~~dp~-~Lg~ 235 (469)
.+..|. .+.|++.+..+ .+........++..+++|. +....+.. ++-.
T Consensus 65 ~~~~~~------------------------~~~~~~~~~~~------~~~~~~~~~~~iv~~~~d~p~~~~~~i~~~i~~ 114 (255)
T d1vica_ 65 CMTSVN------------------------HNSGTERLAEV------VEKLAIPDNEIIVNIQGDEPLIPPVIVRQVADN 114 (255)
T ss_dssp EECCCS------------------------SCCHHHHHHHH------HHHTTCCTTCEEEECCTTCTTCCHHHHHHHHHH
T ss_pred ceeeec------------------------cCCcchhhHHH------HHHhhccCCceEEEEecchhhhhhhhhhhhhhh
Confidence 322222 11223222211 1223333456899999999 66654432 3444
Q ss_pred HHHcCCcceEEEeeecc----CCCcce-EEEEeCCeeEE-EEecc-CChhhhhh-----ccccccccEEEEEeEEEeHHH
Q 012172 236 LIQNKNEYCMEVTPKTL----ADVKGG-TLISYEGKVQL-LEIAQ-VPDEHVNE-----FKSIEKFKIFNTNNLWVNLKA 303 (469)
Q Consensus 236 ~~~~~~~~~~~v~~k~~----~~~~~G-~iv~~~g~~~i-vEy~~-~~~e~~~~-----~~~~~~~~~~Nt~~~~~~l~~ 303 (469)
+..........++.... .+..+. .+...++...- .+... ........ .......-.-|.+.++++..+
T Consensus 115 ~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~ 194 (255)
T d1vica_ 115 LAKFNVNMASLAVKIHDAEELFNPNAVKVLTDKDGYVLYFSRSVIPYDRDQFMNLQDVQKVQLSDAYLRHIGIYAYRAGF 194 (255)
T ss_dssp HHHHTCSEEEEEEECCCHHHHTCTTSCEEEECTTSBEEEEESSCSSCCHHHHTTCSCGGGCCCCTTCEEEEEEEEEEHHH
T ss_pred cccccccccceeeeccchhhccCccceeeeeccCCcccccccccccccchhhhhccchhhcccccchheeeeeecccHHH
Confidence 55555555555443322 122222 22323444321 11111 11111000 011123334589999999999
Q ss_pred HHHHHHhcccccccccCCCcCCCcceehhHHHhhhHhhhcccceeEeecCccccccCCchhHHHHHHHHH
Q 012172 304 IKRLVEADALKMEIIPNPKEVDGIKVLQLETAAGAAIRFFDHAIGCNVHRSRFLPVKATSDLLLVQSDLY 373 (469)
Q Consensus 304 L~~~l~~~~~~lp~~~n~K~~~g~~~iqle~~~~d~~~~~~~~~~v~v~r~eF~pVKn~~dL~~~~~~~~ 373 (469)
+.+.... .+.. -+..-.||..- .+..-.++.++.++..+...|++..||..||..+-
T Consensus 195 l~~~~~~----------~~~~-le~~e~le~lr--~l~ng~~I~~~~~~~~~~idIDt~eDl~~ae~ilk 251 (255)
T d1vica_ 195 IKQYVQW----------APTQ-LENLEKLEQLR--VLYNGERIHVELAKEVPAVGVDTAEDLEKVRAILA 251 (255)
T ss_dssp HHHHHHS----------CCCH-HHHHHTCTTHH--HHHTTCCEEEEECSSCCCCCCCSHHHHHHHHHHHH
T ss_pred Hhhhhcc----------CCCh-hHHHHhHHHHH--HHHCCCceeEEEeCCCCCcCCCCHHHHHHHHHHHH
Confidence 9887542 0000 00111122210 12222344555667778889999999999987653
|
| >d1fxja1 b.81.1.4 (A:252-329) N-acetylglucosamine 1-phosphate uridyltransferase GlmU, C-terminal domain {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Single-stranded left-handed beta-helix superfamily: Trimeric LpxA-like enzymes family: GlmU C-terminal domain-like domain: N-acetylglucosamine 1-phosphate uridyltransferase GlmU, C-terminal domain species: Escherichia coli [TaxId: 562]
Probab=97.61 E-value=3.1e-05 Score=59.46 Aligned_cols=50 Identities=20% Similarity=0.444 Sum_probs=44.7
Q ss_pred CceEEEeeEEECCCcEEeeeEEEE--ecCCCceeeCCCCeeecceecCCCCC
Q 012172 420 DSLKVTGDVWFGANITLKGKVTIA--AKSGEKLEIPDGAVLENKEINGPGDL 469 (469)
Q Consensus 420 ~~l~v~G~v~fg~~V~i~g~~~I~--~~~~~~~~I~~~s~le~~~v~~~~~~ 469 (469)
+++.++|+|.+|+|+.|+.+|+|. ...|+.+.|.++|+|++++|+.|.+|
T Consensus 7 ~~~~I~g~v~IG~~~~I~~~~~i~g~~~IG~~v~Ig~~~~i~~~~Ig~~~~I 58 (78)
T d1fxja1 7 ARFDLRGTLTHGRDVEIDTNVIIEGNVTLGHRVKIGTGCVIKNSVIGDDCEI 58 (78)
T ss_dssp GGEEEEEEEEECSSCEECTTEEEEEEEEECTTCEECTTCEEESCEECTTCEE
T ss_pred CeEEEeccEEECCCCEECCccEEeCCcEECCCCEECCCeEEecCEECCCCEE
Confidence 678899999999999999999999 45889999999999999999987653
|
| >d1eyra_ c.68.1.13 (A:) CMP acylneuraminate synthetase {Neisseria meningitidis [TaxId: 487]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Nucleotide-diphospho-sugar transferases superfamily: Nucleotide-diphospho-sugar transferases family: Cytidylytransferase domain: CMP acylneuraminate synthetase species: Neisseria meningitidis [TaxId: 487]
Probab=97.58 E-value=0.00059 Score=60.85 Aligned_cols=218 Identities=10% Similarity=0.067 Sum_probs=118.1
Q ss_pred ceeEEEEcCCCCCcCCCCCCccccccCCCCchHHHHHHHHHHhhhhcCCcccEEEecCCCChHHHHHHHHHhcCCCCceE
Q 012172 79 KLVVLKLNGGLGTTMGCTGPKSVIEVRNGLTFLDLIVIQIENLNAKYGCNVPLLLMNSFNTHDDTSKIIEKYSKSNVEIH 158 (469)
Q Consensus 79 k~avviLAGG~GTRmg~~~PK~l~~v~~gks~L~~~~~~i~~l~~~~~~~iplviMtS~~t~e~t~~~~~~~~g~~~~i~ 158 (469)
+..+||+|.|..||+- -|.++++ .|+||++|.+++++....- --+++ ++ ..+.+.+..+.|. ..+
T Consensus 4 ~~iaiIpar~~S~R~p---~K~l~~i-~gkpLi~~~i~~~~~s~~~----~~Iiv-~t--d~~~i~~i~~~~~---~~~- 68 (225)
T d1eyra_ 4 QNIAVILARQNSKGLP---LKNLRKM-NGISLLGHTINAAISSKCF----DRIIV-ST--DGGLIAEEAKNFG---VEV- 68 (225)
T ss_dssp EEEEEEECCSCCSSST---TGGGCEE-TTEEHHHHHHHHHHHHTCC----SEEEE-EE--SCHHHHHHHHHTT---CEE-
T ss_pred CEEEEEccCCCCcCCC---Ccccccc-CCeEHHHHHHHHHHHcCCC----ceEEE-ee--ccchhhhhhhhhc---cee-
Confidence 4456889999888874 3999999 9999999999999987521 13444 33 3667777766642 122
Q ss_pred EEEecCcceecCCCCcccCCCCCCCCcccccCCCcccchhccccchHHHHHHcCCcEEEEEeCcc-ccccccH-HHHHHH
Q 012172 159 TFNQSQYPRLCADDFVPLPCKGKTDKDGWYPPGHGDVFPSLMNSGKLDALISQGKEYVFAANSDN-LGAIVDL-KILNHL 236 (469)
Q Consensus 159 ~f~Q~~~P~l~~~~~~~~~~~~~~~~~~~~P~GhGd~~~~L~~sg~L~~l~~~G~~~v~v~n~DN-L~~~~dp-~~Lg~~ 236 (469)
+.-... + -.++.+....... .+ .......+++..+++|+ |...-+. .++-.+
T Consensus 69 -~~~~~~--~--------------------~~~~~~~~~~~~~--~~-~~~~~~~d~ii~~~~~~P~~~~~~I~~~i~~~ 122 (225)
T d1eyra_ 69 -VLRPAE--L--------------------ASDTASSISGVIH--AL-ETIGSNSGTVTLLQPTSPLRTGAHIREAFSLF 122 (225)
T ss_dssp -EECCHH--H--------------------HSTTCCHHHHHHH--HH-HHHTCCSEEEEECCTTCTTCCHHHHHHHHTTC
T ss_pred -eeeccc--c--------------------ccccccchhhccc--cc-cccccccceEEEeeccccccccccccccceee
Confidence 211100 0 0112222111111 11 12234567999999999 7654331 223334
Q ss_pred HHcCCcceEEEeeeccCCCcceEEEEeCCeeEEEEeccCChhhhhhccccccccEEEEEeEEEeHHHHHHHHHhcccccc
Q 012172 237 IQNKNEYCMEVTPKTLADVKGGTLISYEGKVQLLEIAQVPDEHVNEFKSIEKFKIFNTNNLWVNLKAIKRLVEADALKME 316 (469)
Q Consensus 237 ~~~~~~~~~~v~~k~~~~~~~G~iv~~~g~~~ivEy~~~~~e~~~~~~~~~~~~~~Nt~~~~~~l~~L~~~l~~~~~~lp 316 (469)
...+.+..+.++.....+... .....+|.... ..+..... ...+.....-..|.+.++++.+.+.+.-.
T Consensus 123 ~~~~~d~~~~~~~~~~~~~~~-~~~~~~~~~~~--~~~~~~~~-~~~~~~~~~y~~~g~iy~~~~~~l~~~~~------- 191 (225)
T d1eyra_ 123 DEKIKGSVVSACPMEHHPLKT-LLQINNGEYAP--MRHLSDLE-QPRQQLPQAFRPNGAIYINDTASLIANNC------- 191 (225)
T ss_dssp CTTTCCCEEEEEECSSCTTSC-EEECSSSCEEE--SSCGGGGT-SCGGGSCCEEEEEEEEEEEEHHHHHHHTS-------
T ss_pred ccccccccceeeccccccccc-ccccccccccc--cccccccc-cccccCcceeeecceeEEeeHHHHHHcCC-------
Confidence 445667777666554433322 22224454421 11111111 00111122224588899999888765311
Q ss_pred cccCCCcCCCcceehhHHHhhhHhhhcccceeEeecCccccccCCchhHHHHHHHH
Q 012172 317 IIPNPKEVDGIKVLQLETAAGAAIRFFDHAIGCNVHRSRFLPVKATSDLLLVQSDL 372 (469)
Q Consensus 317 ~~~n~K~~~g~~~iqle~~~~d~~~~~~~~~~v~v~r~eF~pVKn~~dL~~~~~~~ 372 (469)
+ . + .+...++++..+..-|++..|+..||..+
T Consensus 192 -~-----~-~-----------------~~~~~~~i~~~~~~dIdt~eDl~~ae~i~ 223 (225)
T d1eyra_ 192 -F-----F-I-----------------APTKLYIMSHQDSIDIDTELDLQQAENIL 223 (225)
T ss_dssp -S-----C-C-----------------SSCEEEECCTTTTCCCCSHHHHHHHHHHH
T ss_pred -c-----c-C-----------------CCeEEEEcCccceECCCCHHHHHHHHHHh
Confidence 0 1 1 22344566666667799999999988654
|
| >d1qwja_ c.68.1.13 (A:) CMP acylneuraminate synthetase {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Nucleotide-diphospho-sugar transferases superfamily: Nucleotide-diphospho-sugar transferases family: Cytidylytransferase domain: CMP acylneuraminate synthetase species: Mouse (Mus musculus) [TaxId: 10090]
Probab=97.44 E-value=0.0013 Score=58.76 Aligned_cols=129 Identities=13% Similarity=0.182 Sum_probs=79.3
Q ss_pred cceeEEEEcCCCCCcCCCCCCccccccCCCCchHHHHHHHHHHhhhhcCCcccEEEecCCCChHHHHHHHHHhcCCCCce
Q 012172 78 DKLVVLKLNGGLGTTMGCTGPKSVIEVRNGLTFLDLIVIQIENLNAKYGCNVPLLLMNSFNTHDDTSKIIEKYSKSNVEI 157 (469)
Q Consensus 78 ~k~avviLAGG~GTRmg~~~PK~l~~v~~gks~L~~~~~~i~~l~~~~~~~iplviMtS~~t~e~t~~~~~~~~g~~~~i 157 (469)
.|+++||+|.|.+||+. =|.+.++ .|+||++|.+++++... .+--++.+++ .+.+.+...+| .+
T Consensus 2 ~ki~aiIpaR~~S~Rlp---~K~l~~i-~gkpLi~~~i~~~~ks~-----~id~Iivstd--~~~i~~~~~~~-----~~ 65 (228)
T d1qwja_ 2 PHLAALVLARGGSKGIP---LKNIKRL-AGVPLIGWVLRAALDAG-----VFQSVWVSTD--HDEIENVAKQF-----GA 65 (228)
T ss_dssp CCEEEEEECCSCCSSSS---CTTTSEE-TTEEHHHHHHHHHHHHT-----CCSEEEEEES--CHHHHHHHHHT-----TC
T ss_pred CCEEEEeccCCCCCCCC---Ccchhhh-CCeeHHHHHHHHHHhcC-----CcceEEEecc--hhhhhhhhhhc-----Cc
Confidence 37899999999999984 2889999 99999999999998875 3444444444 56677777664 24
Q ss_pred EEEEecCcceecCCCCcccCCCCCCCCcccccCCCcccchhccccchHHHHHHcC--CcEEEEEeCcc-ccccccH-HHH
Q 012172 158 HTFNQSQYPRLCADDFVPLPCKGKTDKDGWYPPGHGDVFPSLMNSGKLDALISQG--KEYVFAANSDN-LGAIVDL-KIL 233 (469)
Q Consensus 158 ~~f~Q~~~P~l~~~~~~~~~~~~~~~~~~~~P~GhGd~~~~L~~sg~L~~l~~~G--~~~v~v~n~DN-L~~~~dp-~~L 233 (469)
.++.+... ..+|....+ ..+....... .+++.+.+.|+ |...-+. .++
T Consensus 66 ~~~~~~~~-------------------------~~~~~~~~~---~~i~~~~~~~~~~~~iv~~~~~~P~~~~~~I~~~i 117 (228)
T d1qwja_ 66 QVHRRSSE-------------------------TSKDSSTSL---DAIVEFLNYHNEVDIVGNIQATSPCLHPTDLQKVA 117 (228)
T ss_dssp EEEECCGG-------------------------GSSTTCCHH---HHHHHHHTTCTTCSEEEEECTTCTTCCHHHHHHHH
T ss_pred cccccccc-------------------------cccccchhh---hhhhhccccccccceeeeecccccccCchhhhhhh
Confidence 44444421 012221111 0112222222 46788888999 7654332 344
Q ss_pred HHHHHcCCcceEEEeee
Q 012172 234 NHLIQNKNEYCMEVTPK 250 (469)
Q Consensus 234 g~~~~~~~~~~~~v~~k 250 (469)
..+...+++.++.+...
T Consensus 118 ~~~~~~~~d~~~~~~~~ 134 (228)
T d1qwja_ 118 EMIREEGYDSVFSVVRR 134 (228)
T ss_dssp HHHHSSCCSEEEEEEEE
T ss_pred hhhhccCcccccccccc
Confidence 55566778877766443
|
| >d2oi6a1 b.81.1.4 (A:252-452) N-acetylglucosamine 1-phosphate uridyltransferase GlmU, C-terminal domain {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Single-stranded left-handed beta-helix superfamily: Trimeric LpxA-like enzymes family: GlmU C-terminal domain-like domain: N-acetylglucosamine 1-phosphate uridyltransferase GlmU, C-terminal domain species: Escherichia coli [TaxId: 562]
Probab=96.63 E-value=0.00073 Score=59.73 Aligned_cols=71 Identities=20% Similarity=0.335 Sum_probs=53.1
Q ss_pred eeecCCccCCCCCeEEECCCcccccccccccccCCcccccCceEEEeeEEECCCcEEeeeEEEE-ecCCCceeeCCCCee
Q 012172 380 VTRNEARKNPANPTIELGPEFKKVGNFLSRFKSIPSIIELDSLKVTGDVWFGANITLKGKVTIA-AKSGEKLEIPDGAVL 458 (469)
Q Consensus 380 l~~~~~r~~~~~p~V~l~~~~~~~~~~~~~i~~~p~~~~~~~l~v~G~v~fg~~V~i~g~~~I~-~~~~~~~~I~~~s~l 458 (469)
...+|+|+ ...+.|+++++.. |. .+++|+|+|+||+|++|.++|+|. ...+....+...++.
T Consensus 2 ~~~dp~~~-~i~~~v~IG~~v~--------Ig--------~~vvI~~~v~IG~~~~I~~~~~I~~~~~~~~~~~~~~~~~ 64 (201)
T d2oi6a1 2 MLRDPARF-DLRGTLTHGRDVE--------ID--------TNVIIEGNVTLGHRVKIGTGCVIKNSVIGDDCEISPYTVV 64 (201)
T ss_dssp EESCGGGE-EEEEEEEECSSCE--------EC--------TTEEEEEEEEECTTCEECTTCEEESCEECTTCEECSSCEE
T ss_pred EEeCCCeE-EECceEEECCCCE--------EC--------CCCEECCceEECCCcEECCCEEEeeeccCCceeeeeeecc
Confidence 45567665 4667788887766 63 789999999999999999999998 445566667777777
Q ss_pred ecceecCCC
Q 012172 459 ENKEINGPG 467 (469)
Q Consensus 459 e~~~v~~~~ 467 (469)
+++.++.+.
T Consensus 65 ~~~~i~~~~ 73 (201)
T d2oi6a1 65 EDANLAAAC 73 (201)
T ss_dssp ESCEECTTC
T ss_pred ccccccccc
Confidence 777776654
|
| >d1qrea_ b.81.1.5 (A:) gamma-carbonic anhydrase {Archaeon Methanosarcina thermophila [TaxId: 2210]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Single-stranded left-handed beta-helix superfamily: Trimeric LpxA-like enzymes family: gamma-carbonic anhydrase-like domain: gamma-carbonic anhydrase species: Archaeon Methanosarcina thermophila [TaxId: 2210]
Probab=95.46 E-value=0.0083 Score=53.72 Aligned_cols=45 Identities=20% Similarity=0.333 Sum_probs=37.9
Q ss_pred CceEEEeeEEECCCcEEeeeEEEEecCCCceeeCCCCee-ecceec
Q 012172 420 DSLKVTGDVWFGANITLKGKVTIAAKSGEKLEIPDGAVL-ENKEIN 464 (469)
Q Consensus 420 ~~l~v~G~v~fg~~V~i~g~~~I~~~~~~~~~I~~~s~l-e~~~v~ 464 (469)
.+.+|.|+|.+|+|+.|+.+|+|++..+..+.|.++++| ++++|.
T Consensus 33 p~A~i~g~V~IG~~~~Igp~~vIrgd~~~~i~IG~~~~I~~~~~I~ 78 (210)
T d1qrea_ 33 PQASVIGEVTIGANVMVSPMASIRSDEGMPIFVGDRSNVQDGVVLH 78 (210)
T ss_dssp TTCEEEESEEECTTCEECTTCEEEESSSCCEEECTTCEECTTCEEE
T ss_pred CCCEEecceEECCCCEEccCeeeecccCCceEEcccceeeeeeEec
Confidence 667889999999999999999999888888888888888 445553
|
| >d1g97a1 b.81.1.4 (A:252-447) N-acetylglucosamine 1-phosphate uridyltransferase GlmU, C-terminal domain {Streptococcus pneumoniae [TaxId: 1313]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Single-stranded left-handed beta-helix superfamily: Trimeric LpxA-like enzymes family: GlmU C-terminal domain-like domain: N-acetylglucosamine 1-phosphate uridyltransferase GlmU, C-terminal domain species: Streptococcus pneumoniae [TaxId: 1313]
Probab=93.76 E-value=0.018 Score=49.71 Aligned_cols=24 Identities=17% Similarity=0.327 Sum_probs=17.0
Q ss_pred CceEEEeeEEECCCcEEeeeEEEE
Q 012172 420 DSLKVTGDVWFGANITLKGKVTIA 443 (469)
Q Consensus 420 ~~l~v~G~v~fg~~V~i~g~~~I~ 443 (469)
..++|+++|++|++++|+.+++|.
T Consensus 25 ~~vvI~~~v~IG~~~~I~~~~~i~ 48 (196)
T d1g97a1 25 ANVTLKGQTKIGAETVLTNGTYVV 48 (196)
T ss_dssp TTCEEESSCEECTTCEECTTCEEE
T ss_pred CCCEECCCcEECCCceEcCceEee
Confidence 567777777777777777777665
|
| >d1qrea_ b.81.1.5 (A:) gamma-carbonic anhydrase {Archaeon Methanosarcina thermophila [TaxId: 2210]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Single-stranded left-handed beta-helix superfamily: Trimeric LpxA-like enzymes family: gamma-carbonic anhydrase-like domain: gamma-carbonic anhydrase species: Archaeon Methanosarcina thermophila [TaxId: 2210]
Probab=92.48 E-value=0.046 Score=48.56 Aligned_cols=47 Identities=13% Similarity=0.116 Sum_probs=37.3
Q ss_pred CceEEEeeEEECCCcEEeeeEEEE-ecCCCceeeCCCCeeecceecCC
Q 012172 420 DSLKVTGDVWFGANITLKGKVTIA-AKSGEKLEIPDGAVLENKEINGP 466 (469)
Q Consensus 420 ~~l~v~G~v~fg~~V~i~g~~~I~-~~~~~~~~I~~~s~le~~~v~~~ 466 (469)
..++|.|+|++|++|.|+.+++|. +..|+.+.|.+++++.+++|..+
T Consensus 114 ~~~~i~g~~~IGd~~~IG~gs~i~~~~IG~~~vIg~~svv~g~~i~~g 161 (210)
T d1qrea_ 114 HQSQVHGPAAVGDDTFIGMQAFVFKSKVGNNCVLEPRSAAIGVTIPDG 161 (210)
T ss_dssp TTCEEEEEEEECTTCEECTTCEEEEEEECTTCEECTTCEEESCEECTT
T ss_pred cccccccCCcccCCcEeeCCccccccccccCcEEecCcEecCcEeCCC
Confidence 567788899999999999877776 56777788888888887777654
|
| >d1yp2a1 b.81.1.4 (A:317-451) Glucose-1-phosphate adenylyltransferase small subunit, C-terminal domain {Potato (Solanum tuberosum) [TaxId: 4113]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Single-stranded left-handed beta-helix superfamily: Trimeric LpxA-like enzymes family: GlmU C-terminal domain-like domain: Glucose-1-phosphate adenylyltransferase small subunit, C-terminal domain species: Potato (Solanum tuberosum) [TaxId: 4113]
Probab=89.32 E-value=0.095 Score=42.90 Aligned_cols=23 Identities=9% Similarity=0.148 Sum_probs=16.2
Q ss_pred CCceeeCCCCeeecceecCCCCC
Q 012172 447 GEKLEIPDGAVLENKEINGPGDL 469 (469)
Q Consensus 447 ~~~~~I~~~s~le~~~v~~~~~~ 469 (469)
++.+.|.++|.|++++|+.|.+|
T Consensus 70 ~~~v~Ig~~~~I~~~iIg~~~~I 92 (135)
T d1yp2a1 70 SVPIGIGKNCHIKRAIIDKNARI 92 (135)
T ss_dssp CCCSEECTTCEEESEEECTTCEE
T ss_pred CCCCEECcceEeccceecCCCEE
Confidence 44567888888887777766543
|
| >d1xata_ b.81.1.3 (A:) Xenobiotic acetyltransferase {Pseudomonas aeruginosa [TaxId: 287]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Single-stranded left-handed beta-helix superfamily: Trimeric LpxA-like enzymes family: Galactoside acetyltransferase-like domain: Xenobiotic acetyltransferase species: Pseudomonas aeruginosa [TaxId: 287]
Probab=86.15 E-value=0.13 Score=45.53 Aligned_cols=38 Identities=16% Similarity=0.277 Sum_probs=27.0
Q ss_pred eEEEeeEEECCCcEEeeeEEEE--ecCCCceeeCCCCeee
Q 012172 422 LKVTGDVWFGANITLKGKVTIA--AKSGEKLEIPDGAVLE 459 (469)
Q Consensus 422 l~v~G~v~fg~~V~i~g~~~I~--~~~~~~~~I~~~s~le 459 (469)
..+.|+|++|++|.|+++|+|. ...|+.+.|.++|++-
T Consensus 103 ~~~~g~v~Igd~v~IG~~s~I~~gv~IG~~~vIgagSvVt 142 (208)
T d1xata_ 103 YQPAGDTLIGHEVWIGTEAMFMPGVRVGHGAIIGSRALVT 142 (208)
T ss_dssp CCCCCCEEECTTCEECTTCEECTTCEECTTCEECTTCEEC
T ss_pred ccccCCEEEcCCeEECccccccCCeEeCCCCEEeCceEEe
Confidence 3445677777777777777776 4567778888888873
|
| >d1j2za_ b.81.1.1 (A:) UDP N-acetylglucosamine acyltransferase {Helicobacter pylori [TaxId: 210]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Single-stranded left-handed beta-helix superfamily: Trimeric LpxA-like enzymes family: UDP N-acetylglucosamine acyltransferase domain: UDP N-acetylglucosamine acyltransferase species: Helicobacter pylori [TaxId: 210]
Probab=85.53 E-value=0.25 Score=44.94 Aligned_cols=39 Identities=26% Similarity=0.259 Sum_probs=19.5
Q ss_pred CceEEEeeEEECCCcEEeeeEEEE--ecCCCceeeCCCCee
Q 012172 420 DSLKVTGDVWFGANITLKGKVTIA--AKSGEKLEIPDGAVL 458 (469)
Q Consensus 420 ~~l~v~G~v~fg~~V~i~g~~~I~--~~~~~~~~I~~~s~l 458 (469)
..++|.++|.+|++++|+.+|+|. ...|+...|.++++|
T Consensus 23 ~~~vIg~~v~Ig~~~~I~~~v~I~~~t~IG~~~~i~~~~~I 63 (259)
T d1j2za_ 23 EFCVIGDGVKLDEGVKLHNNVTLQGHTFVGKNTEIFPFAVL 63 (259)
T ss_dssp TTCEECTTCEECTTCEECTTCEECSEEEECTTCEECTTCEE
T ss_pred CCCEECCCCEECCCCEECCCEEEeCCCEEeeecccCCccEE
Confidence 344444455555555555555444 234455555555555
|
| >d2jf2a1 b.81.1.1 (A:1-262) UDP N-acetylglucosamine acyltransferase {Escherichia coli, gene lpxA [TaxId: 562]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Single-stranded left-handed beta-helix superfamily: Trimeric LpxA-like enzymes family: UDP N-acetylglucosamine acyltransferase domain: UDP N-acetylglucosamine acyltransferase species: Escherichia coli, gene lpxA [TaxId: 562]
Probab=85.08 E-value=0.26 Score=45.03 Aligned_cols=37 Identities=30% Similarity=0.215 Sum_probs=17.2
Q ss_pred ceEEEeeEEECCCcEEeeeEEEE--ecCCCceeeCCCCe
Q 012172 421 SLKVTGDVWFGANITLKGKVTIA--AKSGEKLEIPDGAV 457 (469)
Q Consensus 421 ~l~v~G~v~fg~~V~i~g~~~I~--~~~~~~~~I~~~s~ 457 (469)
.++|.++|.+|+|+.|+.+|+|. +..+....|.++++
T Consensus 29 ~~~I~~~v~Ig~~~~I~~~~~I~~~~~ig~~~~i~~~~~ 67 (262)
T d2jf2a1 29 FCIVGPHVEIGEGTVLKSHVVVNGHTKIGRDNEIYQFAS 67 (262)
T ss_dssp TCEECTTEEECTTCEECSSCEECSEEEECSSCEECTTCE
T ss_pred CCEECCCCEECCCCEEeCCEEEcCCccccccceeeeecc
Confidence 44445555555555555555554 22333344444433
|
| >d1xhda_ b.81.1.5 (A:) Putative acetyltransferase/acyltransferase BC4754 {Bacillus cereus [TaxId: 1396]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Single-stranded left-handed beta-helix superfamily: Trimeric LpxA-like enzymes family: gamma-carbonic anhydrase-like domain: Putative acetyltransferase/acyltransferase BC4754 species: Bacillus cereus [TaxId: 1396]
Probab=84.57 E-value=0.53 Score=39.59 Aligned_cols=25 Identities=28% Similarity=0.470 Sum_probs=18.1
Q ss_pred CceEEEeeEEECCCcEEeeeEEEEe
Q 012172 420 DSLKVTGDVWFGANITLKGKVTIAA 444 (469)
Q Consensus 420 ~~l~v~G~v~fg~~V~i~g~~~I~~ 444 (469)
+.++|.|+|++|+++.|+.+|+|.+
T Consensus 23 ~~a~I~~~v~IG~~~~Ig~~~~I~~ 47 (172)
T d1xhda_ 23 DYVTITGDVYVGEESSIWFNTVIRG 47 (172)
T ss_dssp TTCEEEEEEEECTTCEECTTCEEEE
T ss_pred CCCEEeCCEEECCCcEecCCccccc
Confidence 5667777777777777777777753
|
| >d1v3wa_ b.81.1.5 (A:) Ferripyochelin binding protein {Archaeon Pyrococcus horikoshii [TaxId: 53953]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Single-stranded left-handed beta-helix superfamily: Trimeric LpxA-like enzymes family: gamma-carbonic anhydrase-like domain: Ferripyochelin binding protein species: Archaeon Pyrococcus horikoshii [TaxId: 53953]
Probab=83.61 E-value=0.5 Score=39.73 Aligned_cols=40 Identities=13% Similarity=0.207 Sum_probs=27.7
Q ss_pred CceEEEeeEEECCCcEEeeeEEEEecCCCceeeCCCCeeec
Q 012172 420 DSLKVTGDVWFGANITLKGKVTIAAKSGEKLEIPDGAVLEN 460 (469)
Q Consensus 420 ~~l~v~G~v~fg~~V~i~g~~~I~~~~~~~~~I~~~s~le~ 460 (469)
.+.+|.|+|++|+++.|+.+|+|.+.. ..+.|.+++.+..
T Consensus 21 ~~a~I~g~v~IG~~~~Ig~~~~I~~~~-~~v~i~~~~~i~~ 60 (173)
T d1v3wa_ 21 ENAVVIGDVVLEEKTSVWPSAVLRGDI-EQIYVGKYSNVQD 60 (173)
T ss_dssp TTSEEEEEEEECTTCEECTTCEEEEEE-EEEEECTTCEECT
T ss_pred CCCEEeCceEECCCCEECCCccccccc-ccccccccccccc
Confidence 577888999999999999999887432 2344555544443
|
| >d1yp2a1 b.81.1.4 (A:317-451) Glucose-1-phosphate adenylyltransferase small subunit, C-terminal domain {Potato (Solanum tuberosum) [TaxId: 4113]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Single-stranded left-handed beta-helix superfamily: Trimeric LpxA-like enzymes family: GlmU C-terminal domain-like domain: Glucose-1-phosphate adenylyltransferase small subunit, C-terminal domain species: Potato (Solanum tuberosum) [TaxId: 4113]
Probab=83.39 E-value=0.65 Score=37.53 Aligned_cols=40 Identities=23% Similarity=0.324 Sum_probs=31.0
Q ss_pred eEEECCCcEEeeeEEEEecCCCceeeCCCCeeecceecCC
Q 012172 427 DVWFGANITLKGKVTIAAKSGEKLEIPDGAVLENKEINGP 466 (469)
Q Consensus 427 ~v~fg~~V~i~g~~~I~~~~~~~~~I~~~s~le~~~v~~~ 466 (469)
++.+|+|+.|++..+..+..|..+.|.+++.|+++++.++
T Consensus 14 ~s~Ig~g~~I~~~~i~~s~IG~~~~Ig~~~~I~~~~i~~~ 53 (135)
T d1yp2a1 14 DSVIGEGCVIKNCKIHHSVVGLRSCISEGAIIEDSLLMGA 53 (135)
T ss_dssp EEEECTTCEEEEEEEESCEECTTCEECTTCEEESCEECCC
T ss_pred eCEECCCCEEeCCEEeccccCCcEEECCCCEEEcCEEECC
Confidence 5789999999865544466788888999999988877654
|
| >d1j2za_ b.81.1.1 (A:) UDP N-acetylglucosamine acyltransferase {Helicobacter pylori [TaxId: 210]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Single-stranded left-handed beta-helix superfamily: Trimeric LpxA-like enzymes family: UDP N-acetylglucosamine acyltransferase domain: UDP N-acetylglucosamine acyltransferase species: Helicobacter pylori [TaxId: 210]
Probab=82.76 E-value=0.24 Score=45.02 Aligned_cols=23 Identities=13% Similarity=0.353 Sum_probs=12.3
Q ss_pred CceEEEeeEEECCCcEEeeeEEE
Q 012172 420 DSLKVTGDVWFGANITLKGKVTI 442 (469)
Q Consensus 420 ~~l~v~G~v~fg~~V~i~g~~~I 442 (469)
++++|.+++++|+++.|..+++|
T Consensus 41 ~~v~I~~~t~IG~~~~i~~~~~I 63 (259)
T d1j2za_ 41 NNVTLQGHTFVGKNTEIFPFAVL 63 (259)
T ss_dssp TTCEECSEEEECTTCEECTTCEE
T ss_pred CCEEEeCCCEEeeecccCCccEE
Confidence 44555555555555555555554
|