Citrus Sinensis ID: 012186

---

Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350-------360-------370-------380-------390-------400-------410-------420-------430-------440-------450-------460-------47
Protein Sequence
MLPRDISQQIFNELVYSRCLTEVSLEAFRDCALQDLCLGQYPGVNDKWMDVIASQGSSLLSVDLSGSDVTDSGLIHLKDCSNLQSLDFNFCIQISDGGLEHLRGLSNLTSLSFRRNNAITAQGMKAFAGLINLVKLDLERCTRIHGGLVNLKGLMKLESLNIKWCNCITDSDMKPLSGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACLDSLSALGSLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNLDSCGIGDEGLVNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISDGSLRKLAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLFGARITDSGAAYLRNFKNLRSLEICGGGLTDAGVKHIKDLSSLTLLNLSQNCNLTDKTLELISGLTGLVSLNVSNSRITSAGLRHLNHAR
Secondary Structure (PSIPRED)
cccHHHHHHHHHHHHHccccccccHHccccccccEEEccccccccHHHHHHHHHccccccEEEcccccccccccHHccccccccEEEccccccccccccccccccccccEEEccccccccHHcHHHHHccccccEEEcccccccccccccccccccccEEEccccccccccccccccccccccEEEccccccccccHHHccccccccEEEccccccccccHHHHHccccccEEEccccccccccHHHHHccccccEEEccccccccccHHHHHccccccEEEccccccccccHHHHHccccccEEEcccccccccccHHccccccccEEEccccccccccHHHHHccccccEEEccccccccHHHHHHHccccccEEEccccccccccHHHHHccccccEEEccccccccHHHHHccccccccEEEccccccccHHHHHHHHccccccEEEcccccccHHHHHHHHccc
Secondary Structure Prediction (SSPRO)
cccHHHHHHHHHHHccccccccccHHHHccccccEEEcccccccccccccHHHccccccEEEEcccccccccccHHHcccccccEEEEcccccccccccHHHccccccEEEEccccccccccccHHHcccccccEEEcccccccccccHHHcccccccEEEEccccccccccHHHHcccccccEEEEccccccccccHHHcccccccEEEcccccccccccHHHcccccccEEEEccccccccccHHHccccccEEEEEccccccccccHHHcccccccEEEEccccccccccHHHcccccccEEEEccccccccccHHHccccccEEEEEccccccccccHHHcccccccEEEcccccccccccHHHcccccccEEEcccccccccccHHHcccccccEEEcccccccccccHHHccccccEEEEccccccccccccHHHccccccEEEEcccccccccccHHHHccc
Coil and Loop (DISEMBL)
MLPRDISQQIFNELVYSRCLTEVSLEAFRDCALqdlclgqypgvndkWMDVIASQGSSLlsvdlsgsdvtdsglihlkdcsnlqsldfnFCIQisdgglehlrglsnltslsfRRNNAITAQGMKAFAGLINLVKLDLERCTRIHGGLVNLKGLMKLESLNIkwcncitdsdmkplsgltnlkslQISCSKVTDSGIAYLKGLQKLTllnlegcpvtAACLDSLSALGSLFYLnlnrcqlsddgcekfskigslkvlnlgfneITDECLVHLkgltnleslnldscgigdeglvnltglcnlkclelsdtqvgssglrhlsgltnlesinlsftgisdgslrklaglsslkslnldarQITDTGLAALtsltglthldlfgaritDSGAAYLRNFKNLRSLEIcgggltdagvkhikdlssltllnlsqncnltdkTLELISGLTGlvslnvsnsritSAGLRHLNHAR
Flexible Loop (DISEMBL)
mlprdisqqIFNELVYSRCLTEVSLEAFRDCALQDLCLGQYPGVNDKWMDVIASQGSSLLSVDLSGSDVTDSGLIHLKDCSNLQSLDFNFCIQISDGGLEHLRGLSNLTSLSFRRNNAITAQGMKAFAGLINLVKLDLERCTRIHGGlvnlkglmkLESLNIKWCNCITDSDMKPLSGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACLDSLSALGSLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNLDSCGIGDEGLVNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISDGSLRKLAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLFGARITDSGAAYLRNFKNLRSLEICGGGLTDAGVKHIKDLSSLTLLNLSQNCNLTDKTLELISGLTGlvslnvsnsritsaglrhlnhar
Low Complexity Region (SEG)
MLPRDISQQIFNELVYSRCLTEVSLEAFRDCALQDLCLGQYPGVNDKWMDVIASQgssllsvdlsgsdvtdsglIHLKDCSNLQSLDFNFCIQISDGGLEHLRGLSNLTSLSFRRNNAITAQGMKAFAGLINLVKLDLERCTRIHGGLVNLKGLMKLESLNIKWCNCITDSDMKPLSGLTNLKSLQISCSKVTDSGIAYlkglqkltllnlEGCPVTAACLDSLSALGSLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNLDSCGIGDEGLVNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISDGSLRKLAGLSSLKSLNLDARQItdtglaaltsltglthlDLFGARITDSGAAYLRNFKNLRSLEICGGGLTDAGVKHIKDlssltllnlsqncnlTDKTLELISGLTGLVSLNVSNSRITSAGLRHLNHAR
Disordered region (IsUnstruct)
********QIFNELVYSRCLTEVSLEAFRDCALQDLCLGQYPGVNDKWMDVIASQGSSLLSVDLSGSDVTDSGLIHLKDCSNLQSLDFNFCIQISDGGLEHLRGLSNLTSLSFRRNNAITAQGMKAFAGLINLVKLDLERCTRIHGGLVNLKGLMKLESLNIKWCNCITDSDMKPLSGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACLDSLSALGSLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNLDSCGIGDEGLVNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISDGSLRKLAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLFGARITDSGAAYLRNFKNLRSLEICGGGLTDAGVKHIKDLSSLTLLNLSQNCNLTDKTLELISGLTGLVSLNVSN***************
Disordered Region (DISOPRED)
MLPRDISQQIFNELVYSRCLTEVSLEAFRDCALQDLCLGQYPGVNDKWMDVIASQGSSLLSVDLSGSDVTDSGLIHLKDCSNLQSLDFNFCIQISDGGLEHLRGLSNLTSLSFRRNNAITAQGMKAFAGLINLVKLDLERCTRIHGGLVNLKGLMKLESLNIKWCNCITDSDMKPLSGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACLDSLSALGSLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNLDSCGIGDEGLVNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISDGSLRKLAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLFGARITDSGAAYLRNFKNLRSLEICGGGLTDAGVKHIKDLSSLTLLNLSQNCNLTDKTLELISGLTGLVSLNVSNSRITSAGLRHLNHA*
Disordered Region (DISEMBL)
MLPRDISQQIFNELVYSRCLTEVSLEAFRDCALQDLCLGQYPGVNDKWMDVIASQGSSLLSVDLSGSDVTDSGLIHLKDCSNLQSLDFNFCIQISDGGLEHLRGLSNLTSLSFRRNNAITAQGMKAFAGLINLVKLDLERCTRIHGGLVNLKGLMKLESLNIKWCNCITDSDMKPLSGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACLDSLSALGSLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNLDSCGIGDEGLVNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISDGSLRKLAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLFGARITDSGAAYLRNFKNLRSLEICGGGLTDAGVKHIKDLSSLTLLNLSQNCNLTDKTLELISGLTGLVSLNVSNSRITSAGLRHLNHAR
Disordered Region (DISPRO)
MLPRDISQQIFNELVYSRCLTEVSLEAFRDCALQDLCLGQYPGVNDKWMDVIASQGSSLLSVDLSGSDVTDSGLIHLKDCSNLQSLDFNFCIQISDGGLEHLRGLSNLTSLSFRRNNAITAQGMKAFAGLINLVKLDLERCTRIHGGLVNLKGLMKLESLNIKWCNCITDSDMKPLSGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACLDSLSALGSLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNLDSCGIGDEGLVNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISDGSLRKLAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLFGARITDSGAAYLRNFKNLRSLEICGGGLTDAGVKHIKDLSSLTLLNLSQNCNLTDKTLELISGLTGLVSLNVSNSRITSAGLRHL*HAR
Transmembrane Helix (TMHMM)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (MEMSAT)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhhhhhooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (MEMSAT_SVM)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhoooooooooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (Phobius)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx
Signal Peptide (SignalP NN Mode)
xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx
Coiled Coils (COILS)
MLPRDISQQIFNELVYSRCLTEVSLEAFRDCALQDLCLGQYPGVNDKWMDVIASQGSSLLSVDLSGSDVTDSGLIHLKDCSNLQSLDFNFCIQISDGGLEHLRGLSNLTSLSFRRNNAITAQGMKAFAGLINLVKLDLERCTRIHGGLVNLKGLMKLESLNIKWCNCITDSDMKPLSGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACLDSLSALGSLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNLDSCGIGDEGLVNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISDGSLRKLAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLFGARITDSGAAYLRNFKNLRSLEICGGGLTDAGVKHIKDLSSLTLLNLSQNCNLTDKTLELISGLTGLVSLNVSNSRITSAGLRHLNHAR
Positional Conservation
no confident homologs detected

---

Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	469	2.2.26 [Sep-21-2011]
Q8BID8	400	F-box/LRR-repeat protein	yes	no	0.573	0.672	0.331	1e-16
Q17R01	400	F-box/LRR-repeat protein	yes	no	0.573	0.672	0.331	1e-16
Q8N1E6	418	F-box/LRR-repeat protein	yes	no	0.573	0.643	0.331	2e-16
Q723K6	800	Internalin-A OS=Listeria	yes	no	0.705	0.413	0.317	9e-15
G2K3G6	800	Internalin-A OS=Listeria	yes	no	0.705	0.413	0.314	1e-14
P0DJM0	800	Internalin-A OS=Listeria	yes	no	0.705	0.413	0.312	6e-14
Q723X5	1775	Internalin-I OS=Listeria	no	no	0.680	0.179	0.279	8e-12
Q8NEE6	735	F-box/LRR-repeat protein	no	no	0.773	0.493	0.249	4e-11
P23799	630	Putative adenylate cyclas	N/A	no	0.799	0.595	0.290	4e-10
Q8YA32	1778	Internalin-I OS=Listeria	no	no	0.724	0.191	0.256	7e-10

>sp|Q8BID8|FXL14_MOUSE F-box/LRR-repeat protein 14 OS=Mus musculus GN=Fbxl14 PE=2 SV=1

 Score = 88.2 bits (217), Expect = 1e-16,   Method: Compositional matrix adjust.
 Identities = 105/317 (33%), Positives = 169/317 (53%), Gaps = 48/317 (15%)

Query: 176 LSGLTNLKSLQIS-CSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACLDSLSALGSLFYLN 234
           + G+ N++SL +S C  +TD+G+ +                        +  +GSL  LN
Sbjct: 86  IQGMANIESLNLSGCYNLTDNGLGH----------------------AFVQEIGSLRALN 123

Query: 235 LNRC-QLSDDGCEKFSK-IGSLKVLNLG-FNEITDECLVHLK-GLTNLESLNLDSC-GIG 289
           L+ C Q++D    + ++ +  L+VL LG  + IT+  L+ +  GL  L+SLNL SC  + 
Sbjct: 124 LSLCKQITDSSLGRIAQYLKGLEVLELGGCSNITNTGLLLIAWGLQRLKSLNLRSCRHLS 183

Query: 290 DEGLVNLTGLCN--------LKCLELSDTQ-VGSSGLRHLS-GLTNLESINLSFTG-ISD 338
           D G+ +L G+          L+ L L D Q +    L+H+S GLT L  +NLSF G ISD
Sbjct: 184 DVGIGHLAGMTRSAAEGCLGLEQLTLQDCQKLTDLSLKHISRGLTGLRLLNLSFCGGISD 243

Query: 339 GSLRKLAGLSSLKSLNLDA-RQITDTGLA--ALTSLTGLTHLDL-FGARITDSGAAYL-R 393
             L  L+ + SL+SLNL +   I+DTG+   A+ SL  L+ LD+ F  ++ D   AY+ +
Sbjct: 244 AGLLHLSHMGSLRSLNLRSCDNISDTGIMHLAMGSLR-LSGLDVSFCDKVGDQSLAYIAQ 302

Query: 394 NFKNLRSLEICGGGLTDAGV-KHIKDLSSLTLLNLSQNCNLTDKTLELIS-GLTGLVSLN 451
               L+SL +C   ++D G+ + ++ +  L  LN+ Q   +TDK LELI+  L+ L  ++
Sbjct: 303 GLDGLKSLSLCSCHISDDGINRMVRQMHGLRTLNIGQCVRITDKGLELIAEHLSQLTGID 362

Query: 452 VSN-SRITSAGLRHLNH 467
           +   +RIT  GL  +  
Sbjct: 363 LYGCTRITKRGLERITQ 379

Substrate-recognition component of some (SKP1-CUL1-F-box protein)-type E3 ubiquitin-protein ligase complexes. The SCF(FBXL14) complex acts by mediating ubiquitination and subsequent degradation of SNAI1.
Mus musculus (taxid: 10090)

>sp|Q17R01|FXL14_BOVIN F-box/LRR-repeat protein 14 OS=Bos taurus GN=FBXL14 PE=2 SV=1

 Score = 88.2 bits (217), Expect = 1e-16,   Method: Compositional matrix adjust.
 Identities = 105/317 (33%), Positives = 169/317 (53%), Gaps = 48/317 (15%)

Query: 176 LSGLTNLKSLQIS-CSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACLDSLSALGSLFYLN 234
           + G+ N++SL +S C  +TD+G+ +                        +  +GSL  LN
Sbjct: 86  IQGMANIESLNLSGCYNLTDNGLGH----------------------AFVQEIGSLRALN 123

Query: 235 LNRC-QLSDDGCEKFSK-IGSLKVLNLG-FNEITDECLVHLK-GLTNLESLNLDSC-GIG 289
           L+ C Q++D    + ++ +  L+VL LG  + IT+  L+ +  GL  L+SLNL SC  + 
Sbjct: 124 LSLCKQITDSSLGRIAQYLKGLEVLELGGCSNITNTGLLLIAWGLQRLKSLNLRSCRHLS 183

Query: 290 DEGLVNLTGLCN--------LKCLELSDTQ-VGSSGLRHLS-GLTNLESINLSFTG-ISD 338
           D G+ +L G+          L+ L L D Q +    L+H+S GLT L  +NLSF G ISD
Sbjct: 184 DVGIGHLAGMTRSAAEGCLGLEQLTLQDCQKLTDLSLKHISRGLTGLRLLNLSFCGGISD 243

Query: 339 GSLRKLAGLSSLKSLNLDA-RQITDTGLA--ALTSLTGLTHLDL-FGARITDSGAAYL-R 393
             L  L+ + SL+SLNL +   I+DTG+   A+ SL  L+ LD+ F  ++ D   AY+ +
Sbjct: 244 AGLLHLSHMGSLRSLNLRSCDNISDTGIMHLAMGSLR-LSGLDVSFCDKVGDQSLAYIAQ 302

Query: 394 NFKNLRSLEICGGGLTDAGV-KHIKDLSSLTLLNLSQNCNLTDKTLELIS-GLTGLVSLN 451
               L+SL +C   ++D G+ + ++ +  L  LN+ Q   +TDK LELI+  L+ L  ++
Sbjct: 303 GLDGLKSLSLCSCHISDDGINRMVRQMHGLRTLNIGQCVRITDKGLELIAEHLSQLTGID 362

Query: 452 VSN-SRITSAGLRHLNH 467
           +   +RIT  GL  +  
Sbjct: 363 LYGCTRITKRGLERITQ 379

Substrate-recognition component of some SCF (SKP1-CUL1-F-box protein)-type E3 ubiquitin-protein ligase complexes. The SCF(FBXL14) complex acts by mediating ubiquitination and subsequent degradation of SNAI1.

Bos taurus (taxid: 9913)

>sp|Q8N1E6|FXL14_HUMAN F-box/LRR-repeat protein 14 OS=Homo sapiens GN=FBXL14 PE=1 SV=1

 Score = 87.8 bits (216), Expect = 2e-16,   Method: Compositional matrix adjust.
 Identities = 105/317 (33%), Positives = 169/317 (53%), Gaps = 48/317 (15%)

Query: 176 LSGLTNLKSLQIS-CSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACLDSLSALGSLFYLN 234
           + G+ N++SL +S C  +TD+G+ +                        +  +GSL  LN
Sbjct: 86  IQGMANIESLNLSGCYNLTDNGLGH----------------------AFVQEIGSLRALN 123

Query: 235 LNRC-QLSDDGCEKFSK-IGSLKVLNLG-FNEITDECLVHLK-GLTNLESLNLDSC-GIG 289
           L+ C Q++D    + ++ +  L+VL LG  + IT+  L+ +  GL  L+SLNL SC  + 
Sbjct: 124 LSLCKQITDSSLGRIAQYLKGLEVLELGGCSNITNTGLLLIAWGLQRLKSLNLRSCRHLS 183

Query: 290 DEGLVNLTGLCN--------LKCLELSDTQ-VGSSGLRHLS-GLTNLESINLSFTG-ISD 338
           D G+ +L G+          L+ L L D Q +    L+H+S GLT L  +NLSF G ISD
Sbjct: 184 DVGIGHLAGMTRSAAEGCLGLEQLTLQDCQKLTDLSLKHISRGLTGLRLLNLSFCGGISD 243

Query: 339 GSLRKLAGLSSLKSLNLDA-RQITDTGLA--ALTSLTGLTHLDL-FGARITDSGAAYL-R 393
             L  L+ + SL+SLNL +   I+DTG+   A+ SL  L+ LD+ F  ++ D   AY+ +
Sbjct: 244 AGLLHLSHMGSLRSLNLRSCDNISDTGIMHLAMGSLR-LSGLDVSFCDKVGDQSLAYIAQ 302

Query: 394 NFKNLRSLEICGGGLTDAGV-KHIKDLSSLTLLNLSQNCNLTDKTLELIS-GLTGLVSLN 451
               L+SL +C   ++D G+ + ++ +  L  LN+ Q   +TDK LELI+  L+ L  ++
Sbjct: 303 GLDGLKSLSLCSCHISDDGINRMVRQMHGLRTLNIGQCVRITDKGLELIAEHLSQLTGID 362

Query: 452 VSN-SRITSAGLRHLNH 467
           +   +RIT  GL  +  
Sbjct: 363 LYGCTRITKRGLERITQ 379

Substrate-recognition component of some SCF (SKP1-CUL1-F-box protein)-type E3 ubiquitin-protein ligase complexes. The SCF(FBXL14) complex acts by mediating ubiquitination and subsequent degradation of SNAI1.

Homo sapiens (taxid: 9606)

>sp|Q723K6|INLA_LISMF Internalin-A OS=Listeria monocytogenes serotype 4b (strain F2365) GN=inlA PE=3 SV=1

 Score = 82.0 bits (201), Expect = 9e-15,   Method: Compositional matrix adjust.
 Identities = 124/391 (31%), Positives = 181/391 (46%), Gaps = 60/391 (15%)

Query: 59  LLSVDLSGSDVTDSGLIHLKDCSNLQSLDFNFCIQISDGGLEHLRGLSNLTSLSFRRNNA 118
           L  ++ S + +TD  +  LKD + L  +  N   QI+D  +  L  LSNLT L+   NN 
Sbjct: 100 LTQINFSNNQLTD--ITPLKDLTKLVDILMNNN-QIAD--ITPLANLSNLTGLTLF-NNQ 153

Query: 119 ITAQGMKAFAGLINLVKLDLERCTRIHGGLVNLKGLMKLESLNIKWCNCITDSDMKPLSG 178
           IT   +     L NL +L+L   T     +  L GL  L+ L+    N +TD  +KPL+ 
Sbjct: 154 IT--DIDPLKNLTNLNRLELSSNTI--SDISALSGLTSLQQLSF--GNQVTD--LKPLAN 205

Query: 179 LTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACLDSLSALG---SLFYLNL 235
           LT L+ L IS +KV+D  +     L KLT  NLE    T   +  ++ LG   +L  L+L
Sbjct: 206 LTTLERLDISSNKVSDISV-----LAKLT--NLESLIATNNQISDITPLGILTNLDELSL 258

Query: 236 NRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNLDSCGIGDEGLVN 295
           N  QL D G    + + +L  L+L  N+I++  L  L GLT L  L L +  I +  +  
Sbjct: 259 NGNQLKDIGT--LASLTNLTDLDLANNQISN--LAPLSGLTKLTELKLGANQISN--ISP 312

Query: 296 LTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISD----GSLRK-------- 343
           L GL  L  LEL++ Q+    +  +S L NL  + L F  ISD     SL K        
Sbjct: 313 LAGLTALTNLELNENQL--EDISPISNLKNLTYLTLYFNNISDISPVSSLTKLQRLFFYN 370

Query: 344 --------LAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLFGARITDSGAAYLRN- 394
                   LA L+++  L+    QI+D  L  L +LT +T L L     T+    Y  N 
Sbjct: 371 NKVSDVSSLANLTNINWLSAGHNQISD--LTPLANLTRITQLGLNDQEWTNPPVNYKVNV 428

Query: 395 -----FKNLRSLEICGGGLTDAGVKHIKDLS 420
                 KN+    I    ++D G     D++
Sbjct: 429 SIPNTVKNVTGALIAPATISDGGSYAEPDIT 459

Mediates the entry of Listeria monocytogenes into cells.

Listeria monocytogenes serotype 4b (strain F2365) (taxid: 265669)

>sp|G2K3G6|INLA_LISM4 Internalin-A OS=Listeria monocytogenes serotype 1/2a (strain 10403S) GN=inlA PE=3 SV=1

 Score = 81.6 bits (200), Expect = 1e-14,   Method: Compositional matrix adjust.
 Identities = 123/391 (31%), Positives = 182/391 (46%), Gaps = 60/391 (15%)

Query: 59  LLSVDLSGSDVTDSGLIHLKDCSNLQSLDFNFCIQISDGGLEHLRGLSNLTSLSFRRNNA 118
           L  ++ S + +TD  +  LKD + L  +  N   QI+D  +  L  L+NLT L+   NN 
Sbjct: 100 LTQINFSNNQLTD--ITPLKDLTKLVDILMNNN-QIAD--ITPLANLTNLTGLTLF-NNQ 153

Query: 119 ITAQGMKAFAGLINLVKLDLERCTRIHGGLVNLKGLMKLESLNIKWCNCITDSDMKPLSG 178
           IT   +     L NL +L+L   T     +  L GL  L+ L+    N +TD  +KPL+ 
Sbjct: 154 IT--DIDPLKNLTNLNRLELSSNTI--SDISALSGLTNLQQLSF--GNQVTD--LKPLAN 205

Query: 179 LTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACLDSLSALG---SLFYLNL 235
           LT L+ L IS +KV+D  +     L KLT  NLE    T   +  ++ LG   +L  L+L
Sbjct: 206 LTTLERLDISSNKVSDISV-----LAKLT--NLESLIATNNQISDITPLGILTNLDELSL 258

Query: 236 NRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNLDSCGIGDEGLVN 295
           N  QL D G    + + +L  L+L  N+I++  L  L GLT L  L L +  I +  +  
Sbjct: 259 NGNQLKDIGT--LASLTNLTDLDLANNQISN--LAPLSGLTKLTELKLGANQISN--ISP 312

Query: 296 LTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISD----GSLRK-------- 343
           L GL  L  LEL++ Q+    +  +S L NL  + L F  ISD     SL K        
Sbjct: 313 LAGLTALTNLELNENQL--EDISPISNLKNLTYLTLYFNNISDISPVSSLTKLQRLFFYN 370

Query: 344 --------LAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLFGARITDSGAAYLRN- 394
                   LA L+++  L+    QI+D  L  L +LT +T L L     T++   Y  N 
Sbjct: 371 NKVSDVSSLANLTNINWLSAGHNQISD--LTPLANLTRITQLGLNDQAWTNAPVNYKANV 428

Query: 395 -----FKNLRSLEICGGGLTDAGVKHIKDLS 420
                 KN+    I    ++D G     D++
Sbjct: 429 SIPNTVKNVTGALIAPATISDGGSYAEPDIT 459

Mediates the entry of Listeria monocytogenes into cells.

Listeria monocytogenes serotype 1/2a (strain 10403S) (taxid: 393133)

>sp|P0DJM0|INLA_LISMO Internalin-A OS=Listeria monocytogenes serovar 1/2a (strain ATCC BAA-679 / EGD-e) GN=inlA PE=1 SV=1

 Score = 79.3 bits (194), Expect = 6e-14,   Method: Compositional matrix adjust.
 Identities = 122/391 (31%), Positives = 182/391 (46%), Gaps = 60/391 (15%)

Query: 59  LLSVDLSGSDVTDSGLIHLKDCSNLQSLDFNFCIQISDGGLEHLRGLSNLTSLSFRRNNA 118
           L  ++ S + +TD  +  LK+ + L  +  N   QI+D  +  L  L+NLT L+   NN 
Sbjct: 100 LTQINFSNNQLTD--ITPLKNLTKLVDILMNNN-QIAD--ITPLANLTNLTGLTLF-NNQ 153

Query: 119 ITAQGMKAFAGLINLVKLDLERCTRIHGGLVNLKGLMKLESLNIKWCNCITDSDMKPLSG 178
           IT   +     L NL +L+L   T     +  L GL  L+ L+    N +TD  +KPL+ 
Sbjct: 154 IT--DIDPLKNLTNLNRLELSSNTI--SDISALSGLTSLQQLSF--GNQVTD--LKPLAN 205

Query: 179 LTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACLDSLSALG---SLFYLNL 235
           LT L+ L IS +KV+D  +     L KLT  NLE    T   +  ++ LG   +L  L+L
Sbjct: 206 LTTLERLDISSNKVSDISV-----LAKLT--NLESLIATNNQISDITPLGILTNLDELSL 258

Query: 236 NRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNLDSCGIGDEGLVN 295
           N  QL D G    + + +L  L+L  N+I++  L  L GLT L  L L +  I +  +  
Sbjct: 259 NGNQLKDIGT--LASLTNLTDLDLANNQISN--LAPLSGLTKLTELKLGANQISN--ISP 312

Query: 296 LTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISD----GSLRK-------- 343
           L GL  L  LEL++ Q+    +  +S L NL  + L F  ISD     SL K        
Sbjct: 313 LAGLTALTNLELNENQL--EDISPISNLKNLTYLTLYFNNISDISPVSSLTKLQRLFFYN 370

Query: 344 --------LAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLFGARITDSGAAYLRN- 394
                   LA L+++  L+    QI+D  L  L +LT +T L L     T++   Y  N 
Sbjct: 371 NKVSDVSSLANLTNINWLSAGHNQISD--LTPLANLTRITQLGLNDQAWTNAPVNYKANV 428

Query: 395 -----FKNLRSLEICGGGLTDAGVKHIKDLS 420
                 KN+    I    ++D G     D++
Sbjct: 429 SIPNTVKNVTGALIAPATISDGGSYTEPDIT 459

Mediates the entry of L.monocytogenes into cells.

Listeria monocytogenes serovar 1/2a (strain ATCC BAA-679 / EGD-e) (taxid: 169963)

>sp|Q723X5|INLI_LISMF Internalin-I OS=Listeria monocytogenes serotype 4b (strain F2365) GN=inlI PE=3 SV=1

 Score = 72.0 bits (175), Expect = 8e-12,   Method: Composition-based stats.
 Identities = 108/386 (27%), Positives = 172/386 (44%), Gaps = 67/386 (17%)

Query: 99  LEHLRGLSNLTSLSFRRNNAITAQGMKAFAGLINLVKLDLERCTRIHGGLVNLKGLMKLE 158
           +E L+ L NLTSL+   NN      +     L+NLV L+L      +  LVNL G     
Sbjct: 172 IEGLQYLENLTSLNLSENN---ISDLAPIKDLVNLVSLNLSS----NRTLVNLSG----- 219

Query: 159 SLNIKWCNCITDSDMKPLSGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTA 218
                            + GL NL+ L +S +K  +  I+ +  L  L  ++ +GC +  
Sbjct: 220 -----------------VEGLVNLQELNVSANKALED-ISQVAALPVLKEISAQGCNIKT 261

Query: 219 ACLDSLSA--LGSLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLT 276
             LD+ +   L  L    L    L+D      +K+  LK L +  N  + + L  LKG T
Sbjct: 262 LELDNPAGAILPELETFYLQENDLTD--LTSLAKLPKLKNLYIKGNA-SLKSLATLKGAT 318

Query: 277 NLESLNLDSCGIGDEGLVNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLES-INLSFTG 335
            L+ ++  +C    E L +++GL  L+ ++LS    G S L+ ++ L +L + +N++   
Sbjct: 319 KLQLIDASNC-TDLETLGDISGLSELEMIQLS----GCSKLKEITSLKDLPNLVNITADS 373

Query: 336 ISDGSLRKLAGLSSLKSLNL-DARQITDTGLAALTSLTGLTHLDLFGARITDSGAAYLRN 394
            +   L  L  L  L++L L D + +T+  + A+T +  L  L L G  IT  G   L N
Sbjct: 374 CAIEDLGTLNNLPKLQTLILSDNKDLTN--INAITDMPQLKTLALDGCGITSIGT--LDN 429

Query: 395 FKNLRSLEICGGGLTDAGVKHIKDLSSLTLLNLSQN----------------CNLTDKTL 438
              L  L++    LT   +  I DL  L+ L++S N                 N++   L
Sbjct: 430 LPKLEKLDLKENQLTS--ISEINDLPRLSYLDVSVNYLTTIGELKKLPLLEWLNVSSNRL 487

Query: 439 ELISGLTGLVSL---NVSNSRITSAG 461
             +S LT   SL   NVSN+ I + G
Sbjct: 488 SDVSTLTNFPSLNYINVSNNVIRTVG 513

Unknown. A role in virulence could not be demonstrated.

Listeria monocytogenes serotype 4b (strain F2365) (taxid: 265669)

>sp|Q8NEE6|FXL13_HUMAN F-box/LRR-repeat protein 13 OS=Homo sapiens GN=FBXL13 PE=2 SV=3

 Score = 69.7 bits (169), Expect = 4e-11,   Method: Compositional matrix adjust.
 Identities = 112/449 (24%), Positives = 197/449 (43%), Gaps = 86/449 (19%)

Query: 33  LQDLCLGQYPGVNDKWMDVIASQGSSLLSVDLSGSDVTDSGLIHL-KDCSNLQSLDFNFC 91
           LQ+L +   P   D+ M  I+     +L ++LS + +T+  +  L +   NLQ+L   +C
Sbjct: 247 LQELNVSDCPTFTDESMRHISEGCPGVLCLNLSNTTITNRTMRLLPRHFHNLQNLSLAYC 306

Query: 92  IQISDGGLEHLR---GLSNLTSLSFRRNNAITAQGMKAFA----GLINL----------- 133
            + +D GL++L    G   L  L       I+ QG +  A    G+++L           
Sbjct: 307 RRFTDKGLQYLNLGNGCHKLIYLDLSGCTQISVQGFRYIANSCTGIMHLTINDMPTLTDN 366

Query: 134 -VKLDLERCTRI---------HGGLVNLKGL--MKLESLNIKWCNCITDSDMKPL-SGLT 180
            VK  +E+C+RI         H      + L   KL  +  +    +TD+  K +     
Sbjct: 367 CVKALVEKCSRITSLVFTGAPHISDCTFRALSACKLRKIRFEGNKRVTDASFKFIDKNYP 426

Query: 181 NLKSLQIS-CSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACLDSLSALGSLFYLNLNRCQ 239
           NL  + ++ C  +TDS +  L  L++LT+LNL  C                         
Sbjct: 427 NLSHIYMADCKGITDSSLRSLSPLKQLTVLNLANC------------------------- 461

Query: 240 LSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNLDSC-GIGDEGLVNLTG 298
                         +++ ++G  +  D           +  LNL +C  + D  ++ L+ 
Sbjct: 462 --------------VRIGDMGLKQFLDG-----PASMRIRELNLSNCVRLSDASVMKLSE 502

Query: 299 LC-NLKCLELSDTQ-VGSSGLRHLSGLTNLESINLSFTGISDGSLRKLAGLSSLKSLNL- 355
            C NL  L L + + + + G+ ++  + +L SI+LS T IS+  L  L+    LK L++ 
Sbjct: 503 RCPNLNYLSLRNCEHLTAQGIGYIVNIFSLVSIDLSGTDISNEGLNVLSRHKKLKELSVS 562

Query: 356 DARQITDTGLAAL-TSLTGLTHLDL-FGARITDSGAAYLRNF-KNLRSLEICG-GGLTDA 411
           +  +ITD G+ A   S   L HLD+ + ++++D     L  +  NL SL I G   +TD+
Sbjct: 563 ECYRITDDGIQAFCKSSLILEHLDVSYCSQLSDMIIKALAIYCINLTSLSIAGCPKITDS 622

Query: 412 GVKHIK-DLSSLTLLNLSQNCNLTDKTLE 439
            ++ +      L +L++S    LTD+ LE
Sbjct: 623 AMEMLSAKCHYLHILDISGCVLLTDQILE 651

Substrate-recognition component of the SCF (SKP1-CUL1-F-box protein)-type E3 ubiquitin ligase complex.

Homo sapiens (taxid: 9606)

>sp|P23799|ESAG8_TRYBB Putative adenylate cyclase regulatory protein OS=Trypanosoma brucei brucei GN=ESAG8 PE=2 SV=1

 Score = 66.6 bits (161), Expect = 4e-10,   Method: Compositional matrix adjust.
 Identities = 125/431 (29%), Positives = 188/431 (43%), Gaps = 56/431 (12%)

Query: 57  SSLLSVDLSGSDVTDSGLIHLKDCSNLQSLDFNFCIQISDGGLEHLRGLSNLTSLSFRRN 116
             L S+ L  ++VTD  L  +     L+ LD + C +I+D  L  + G+ +L  LS    
Sbjct: 230 PQLTSLSLCQTNVTDKDLRCIHPDGKLKMLDISSCHEITD--LTAIGGVRSLEKLSLSGC 287

Query: 117 NAITAQGMKAFAGLINLVKLDLERCTRIHGGLVNLKGLMKLESLNIKWCNCITDSDMKPL 176
             +T +G++      NL +LD+  C  + G  V LK L+ L+ L++   NC    D+  L
Sbjct: 288 WNVT-KGLEELCKFSNLRELDISGCL-VLGSAVVLKNLINLKVLSVS--NCKNFKDLNGL 343

Query: 177 SGLTNLKSLQIS-CSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACLDSLSALGSLFYLNL 235
             L NL+ L +S C  V  S + ++  L  L  L++ GC  +  C D L  L +L  L L
Sbjct: 344 ERLVNLEKLNLSGCHGV--SSLGFVANLSNLKELDISGCE-SLVCFDGLQDLNNLEVLYL 400

Query: 236 NRCQLSDDGCEKFSKIGSLKVLNL-------GFNEITDECLVHLKGLTNLESLNLDSCGI 288
              +        F+ +G++K L+        G   IT   L  L+ L  LE L+L+ CG 
Sbjct: 401 RDVK-------SFTNVGAIKNLSKMRELDLSGCERITS--LSGLETLKGLEELSLEGCG- 450

Query: 289 GDEGLVNLTGLCNLKCLELSDTQVGSSGLRHLSG---LTNLESINL-------SFTGISD 338
                  +  L +L+ L +S+       L  LSG   LT LE + L       +F  I +
Sbjct: 451 EIMSFDPIWSLYHLRVLYVSEC----GNLEDLSGLQCLTGLEEMYLHGCRKCTNFGPIWN 506

Query: 339 GSLRKLAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLFGA-RITDSGAAYLRNFKN 397
             LR +  L      NLD        L+ L  LTGL  L L G   IT  G   + N +N
Sbjct: 507 --LRNVCVLELSCCENLD-------DLSGLQCLTGLEELYLIGCEEITTIGV--VGNLRN 555

Query: 398 LRSLEICG-GGLTDAGVKHIKDLSSLTLLNLSQNCNLTDKTLELISGLTGLVSLNVSNSR 456
           L+ L  C    L + G   ++ L +L  L+LS  C L+      +  L  L       SR
Sbjct: 556 LKCLSTCWCANLKELG--GLERLVNLEKLDLSGCCGLSSSVFMELMSLPKLQWFYGFGSR 613

Query: 457 ITSAGLRHLNH 467
           +    L+ L  
Sbjct: 614 VPDIVLKELKR 624

May be involved in the postranscriptional regulation of genes in VSG expression sites.

Trypanosoma brucei brucei (taxid: 5702)

>sp|Q8YA32|INLI_LISMO Internalin-I OS=Listeria monocytogenes serovar 1/2a (strain ATCC BAA-679 / EGD-e) GN=inlI PE=4 SV=1

 Score = 65.9 bits (159), Expect = 7e-10,   Method: Composition-based stats.
 Identities = 101/393 (25%), Positives = 172/393 (43%), Gaps = 53/393 (13%)

Query: 99  LEHLRGLSNLTSLSFRRNNAITAQGMKAFAGLINLVKLDLERCTRIHGGLVNLKGLMKLE 158
           +E L+ L NLTSL+   NN      +     L+NLV L+L      +  LVNL G+  L 
Sbjct: 175 IEGLQYLENLTSLNLSENN---ISDLAPLKDLVNLVSLNLSS----NRTLVNLSGVEDL- 226

Query: 159 SLNIKWCNCITDSDMKPLSGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTA 218
            +N++  N   +  ++ +S + +L  L+   ++  +     LK      L  LE   +  
Sbjct: 227 -VNLQELNVSANKALEDISQVASLPVLKEISAQGCNIKTLELKNPAGAVLPELETFYLQE 285

Query: 219 ACLDSLSALGSL-----FYLNLN-------------RCQLSD-DGCEKFSKIGSLKVLN- 258
             L +L++L  L      Y+  N             + QL D   C     +G +  L+ 
Sbjct: 286 NDLTNLTSLAKLPKLKNLYIKGNASLKSLETLNGATKLQLIDASNCTDLETLGDISGLSE 345

Query: 259 ------LGFNEITDECLVHLKGLTNLESLNLDSCGIGDEGLVNLTGLCNLKCLELSDTQV 312
                  G +++ +  +  LK L NL ++  DSC I D G +N   L  L+ L LSD + 
Sbjct: 346 LEMIQLSGCSKLKE--ITSLKNLPNLVNITADSCAIEDLGTLN--NLPKLQTLVLSDNE- 400

Query: 313 GSSGLRHLSGLTNLESI-NLSFTGISDGSLRKLAGLSSLKSLNLDARQITDTGLAALTSL 371
               L +++ +T+L  +  L+  G    S+  L  L  L+ L+L   QIT   ++ +T L
Sbjct: 401 ---NLTNITAITDLPQLKTLTLDGCGITSIGTLDNLPKLEKLDLKENQITS--ISEITDL 455

Query: 372 TGLTHLDLFGARITDSGAAYLRNFKNLRSLEICGGGLTDAGVKHIKDLSSLTLLNLSQNC 431
             L++LD+    +T  G   L+    L  L +    L+D  V  + +  SL  +N+S N 
Sbjct: 456 PRLSYLDVSVNNLTTIGD--LKKLPLLEWLNVSSNRLSD--VSTLTNFPSLNYINISNN- 510

Query: 432 NLTDKTLELISGLTGLVSLNVSNSRITSAGLRH 464
               +T+  ++ L  L      N+ I+   + H
Sbjct: 511 --VIRTVGKMTELPSLKEFYAQNNSISDISMIH 541

Unknown. A role in virulence could not be demonstrated.

Listeria monocytogenes serovar 1/2a (strain ATCC BAA-679 / EGD-e) (taxid: 169963)

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	469
225463572	578	PREDICTED: F-box/LRR-repeat protein 14 [	0.829	0.673	0.793	0.0
449436168	578	PREDICTED: F-box/LRR-repeat protein 14-l	0.940	0.762	0.784	0.0
359484681	578	PREDICTED: insulin-like growth factor-bi	0.980	0.795	0.750	0.0
356519276	577	PREDICTED: F-box/LRR-repeat protein 14-l	0.933	0.759	0.791	0.0
357458869	585	F-box/LRR-repeat protein [Medicago trunc	0.991	0.794	0.744	0.0
388500850	577	unknown [Medicago truncatula]	0.933	0.759	0.750	0.0
224120462	576	predicted protein [Populus trichocarpa]	0.989	0.805	0.737	0.0
182407840	580	F-box-containing protein 1 [Malus x dome	0.931	0.753	0.739	0.0
357468127	573	F-box/LRR-repeat protein [Medicago trunc	0.978	0.801	0.743	0.0
297844484	578	leucine-rich repeat family protein [Arab	0.989	0.802	0.774	0.0

>gi|225463572|ref|XP_002270172.1| PREDICTED: F-box/LRR-repeat protein 14 [Vitis vinifera] gi|297743556|emb|CBI36423.3| unnamed protein product [Vitis vinifera]

 Score =  695 bits (1793), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 372/469 (79%), Positives = 424/469 (90%)

Query: 1   MLPRDISQQIFNELVYSRCLTEVSLEAFRDCALQDLCLGQYPGVNDKWMDVIASQGSSLL 60
           MLPRDISQQIFNELV+S+CLT+VSL+AF+DCALQD+ LG+YPGV+D WMDVI+SQG SLL
Sbjct: 76  MLPRDISQQIFNELVFSQCLTDVSLKAFQDCALQDIYLGEYPGVSDSWMDVISSQGVSLL 135

Query: 61  SVDLSGSDVTDSGLIHLKDCSNLQSLDFNFCIQISDGGLEHLRGLSNLTSLSFRRNNAIT 120
           SVDLSGS++T+SGLIHLKDC+NLQ+L+ N+C QISD GL+H+ GLSNLT+LSFRRNNAIT
Sbjct: 136 SVDLSGSEITNSGLIHLKDCTNLQALNLNYCDQISDHGLKHISGLSNLTTLSFRRNNAIT 195

Query: 121 AQGMKAFAGLINLVKLDLERCTRIHGGLVNLKGLMKLESLNIKWCNCITDSDMKPLSGLT 180
           AQGM AF+ L+NLVKLDLERC  IHGGL++LKGL KLESLNI  C+CITD+D+KPLSGLT
Sbjct: 196 AQGMSAFSSLVNLVKLDLERCPGIHGGLIHLKGLTKLESLNINMCHCITDADLKPLSGLT 255

Query: 181 NLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACLDSLSALGSLFYLNLNRCQL 240
           NLK L+IS SKVTD G+AYLKGL KL LLN+EGCPVTAACL+SLS L SL  LNLNR  L
Sbjct: 256 NLKGLEISRSKVTDDGVAYLKGLHKLALLNMEGCPVTAACLESLSDLPSLLSLNLNRSML 315

Query: 241 SDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNLDSCGIGDEGLVNLTGLC 300
           SDDGCE F++  +L+VLNLGFN++TD CLVHLKGLTNLESLNLDSC I DEGL NLTGL 
Sbjct: 316 SDDGCENFARQENLRVLNLGFNDLTDACLVHLKGLTNLESLNLDSCRICDEGLANLTGLR 375

Query: 301 NLKCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISDGSLRKLAGLSSLKSLNLDARQI 360
           +LKCLELSDT+VGS+GLRHLSGL NLESINLSFT ++D  LRKL+ LSSLKSLNLDARQI
Sbjct: 376 HLKCLELSDTEVGSNGLRHLSGLANLESINLSFTAVTDSGLRKLSALSSLKSLNLDARQI 435

Query: 361 TDTGLAALTSLTGLTHLDLFGARITDSGAAYLRNFKNLRSLEICGGGLTDAGVKHIKDLS 420
           TD GLAALTSLTGLTHLDLFGARITDSG +YLRNFKNL+SLEICGGGLTDAGVK+IKDL+
Sbjct: 436 TDAGLAALTSLTGLTHLDLFGARITDSGTSYLRNFKNLQSLEICGGGLTDAGVKNIKDLT 495

Query: 421 SLTLLNLSQNCNLTDKTLELISGLTGLVSLNVSNSRITSAGLRHLNHAR 469
            LT+LNLSQNCNLTDK+LELISGLT LVSL+VSNSRIT+AGL+HL   +
Sbjct: 496 CLTVLNLSQNCNLTDKSLELISGLTALVSLSVSNSRITNAGLQHLKQLK 544

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|449436168|ref|XP_004135866.1| PREDICTED: F-box/LRR-repeat protein 14-like [Cucumis sativus] gi|449509305|ref|XP_004163550.1| PREDICTED: F-box/LRR-repeat protein 14-like [Cucumis sativus]

 Score =  691 bits (1782), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 365/465 (78%), Positives = 416/465 (89%)

Query: 1   MLPRDISQQIFNELVYSRCLTEVSLEAFRDCALQDLCLGQYPGVNDKWMDVIASQGSSLL 60
           MLPRD+SQ I NELVYS+ LT++S++AFRDCALQDL  G+ PGVND W+DVI+SQGSS+L
Sbjct: 76  MLPRDLSQLILNELVYSQLLTDISIQAFRDCALQDLHFGECPGVNDAWIDVISSQGSSVL 135

Query: 61  SVDLSGSDVTDSGLIHLKDCSNLQSLDFNFCIQISDGGLEHLRGLSNLTSLSFRRNNAIT 120
           SVDLSGS+VTDSGL++L++CSNLQSL+ NFC  ISD GL H+ G S LTSLSFR+N+ IT
Sbjct: 136 SVDLSGSEVTDSGLMNLRNCSNLQSLNLNFCEHISDRGLAHIGGFSRLTSLSFRKNSEIT 195

Query: 121 AQGMKAFAGLINLVKLDLERCTRIHGGLVNLKGLMKLESLNIKWCNCITDSDMKPLSGLT 180
           AQGM  FA L+NL++LDLE+C  IHGGLV+L+GL KLESLNIKWCNCITDSD+KPLSGLT
Sbjct: 196 AQGMSVFAHLVNLIRLDLEKCPGIHGGLVHLQGLRKLESLNIKWCNCITDSDIKPLSGLT 255

Query: 181 NLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACLDSLSALGSLFYLNLNRCQL 240
           NLK LQISCSKVTD+GIAYLKGL KL+LLNLEGCPVTAACL +LSALG+L YLNL+RC +
Sbjct: 256 NLKGLQISCSKVTDAGIAYLKGLHKLSLLNLEGCPVTAACLYTLSALGALQYLNLSRCHI 315

Query: 241 SDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNLDSCGIGDEGLVNLTGLC 300
           +DDG E+FS +G+LK+LNLGFN+ITDECLVHLKGLTNLESLNLDSC I D+GLVNL  L 
Sbjct: 316 TDDGSEQFSGLGALKILNLGFNDITDECLVHLKGLTNLESLNLDSCRIEDDGLVNLKALH 375

Query: 301 NLKCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISDGSLRKLAGLSSLKSLNLDARQI 360
            LKCLELSDT VGS+GLRHLSGL NLE +NLSFT ++D  L+KL+GLSSLKSLNLD RQI
Sbjct: 376 RLKCLELSDTDVGSNGLRHLSGLFNLEKLNLSFTVVTDIGLKKLSGLSSLKSLNLDTRQI 435

Query: 361 TDTGLAALTSLTGLTHLDLFGARITDSGAAYLRNFKNLRSLEICGGGLTDAGVKHIKDLS 420
           TD GLA+LT L GLTHLDLFGARITDSG  YLRNFKNL+SLEICGGGLTDAGVK+IKDLS
Sbjct: 436 TDIGLASLTGLVGLTHLDLFGARITDSGTNYLRNFKNLQSLEICGGGLTDAGVKNIKDLS 495

Query: 421 SLTLLNLSQNCNLTDKTLELISGLTGLVSLNVSNSRITSAGLRHL 465
           SL +LNLSQN NLTDK+LELISGLTGLVSLN+SNSRITSAGLRHL
Sbjct: 496 SLMVLNLSQNGNLTDKSLELISGLTGLVSLNISNSRITSAGLRHL 540

Source: Cucumis sativus

Species: Cucumis sativus

Genus: Cucumis

Family: Cucurbitaceae

Order: Cucurbitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|359484681|ref|XP_002262830.2| PREDICTED: insulin-like growth factor-binding protein complex acid labile subunit-like [Vitis vinifera] gi|296084545|emb|CBI25566.3| unnamed protein product [Vitis vinifera]

 Score =  684 bits (1766), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 352/469 (75%), Positives = 408/469 (86%)

Query: 1   MLPRDISQQIFNELVYSRCLTEVSLEAFRDCALQDLCLGQYPGVNDKWMDVIASQGSSLL 60
           MLPRDISQQIF+  V S CLT  SLEAFRDCA+QD+ LG+YP VND WMD+I+SQG SLL
Sbjct: 76  MLPRDISQQIFDNFVDSHCLTSASLEAFRDCAIQDVNLGEYPEVNDSWMDIISSQGLSLL 135

Query: 61  SVDLSGSDVTDSGLIHLKDCSNLQSLDFNFCIQISDGGLEHLRGLSNLTSLSFRRNNAIT 120
           SVDLSGS VTD GL  LKDCSN+Q L FN+C QIS+ GL+++ GLSNLTSLSF+++N +T
Sbjct: 136 SVDLSGSSVTDDGLSLLKDCSNIQVLSFNYCDQISEPGLKNISGLSNLTSLSFKKSNTVT 195

Query: 121 AQGMKAFAGLINLVKLDLERCTRIHGGLVNLKGLMKLESLNIKWCNCITDSDMKPLSGLT 180
           A+GM+AF+ L+NL KLDLERC+RIHGGL++LKGL KLESLNI++C CITDSD+K LSGLT
Sbjct: 196 AEGMRAFSSLVNLAKLDLERCSRIHGGLIHLKGLTKLESLNIRYCKCITDSDLKALSGLT 255

Query: 181 NLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACLDSLSALGSLFYLNLNRCQL 240
           +LK LQ+SCS +TD GI+YLKGL KL LL++EGC VT +CLDSLSAL +L YLNLNRC L
Sbjct: 256 SLKELQMSCSNITDIGISYLKGLCKLMLLDVEGCHVTTSCLDSLSALVALSYLNLNRCGL 315

Query: 241 SDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNLDSCGIGDEGLVNLTGLC 300
           SD GCEKFS + +LKVLN+GFN ITD CLVHLKGLTNLESLNLDSC I DEGL NLTGL 
Sbjct: 316 SDVGCEKFSGLKNLKVLNMGFNNITDACLVHLKGLTNLESLNLDSCSIEDEGLANLTGLS 375

Query: 301 NLKCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISDGSLRKLAGLSSLKSLNLDARQI 360
            LKCLELSDT+VGS+GL HLSGLT LES+NLSFT ++D  L+KL GL+SLKSLNLDARQI
Sbjct: 376 LLKCLELSDTKVGSNGLCHLSGLTKLESLNLSFTLVTDSGLKKLCGLTSLKSLNLDARQI 435

Query: 361 TDTGLAALTSLTGLTHLDLFGARITDSGAAYLRNFKNLRSLEICGGGLTDAGVKHIKDLS 420
           TD GLAA+TSLTGLTHLDLFGARI+D+G   LR+FKNL++LEICGGGLTDAGVK+IK L+
Sbjct: 436 TDAGLAAITSLTGLTHLDLFGARISDAGTNCLRHFKNLQTLEICGGGLTDAGVKNIKGLA 495

Query: 421 SLTLLNLSQNCNLTDKTLELISGLTGLVSLNVSNSRITSAGLRHLNHAR 469
           SLTLLNLSQNCNLTDKTLE+ISGLT LVSLNVSNSRIT+ GL+HL   +
Sbjct: 496 SLTLLNLSQNCNLTDKTLEMISGLTALVSLNVSNSRITNNGLQHLKPLK 544

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356519276|ref|XP_003528299.1| PREDICTED: F-box/LRR-repeat protein 14-like isoform 1 [Glycine max]

 Score =  673 bits (1736), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 368/465 (79%), Positives = 405/465 (87%)

Query: 1   MLPRDISQQIFNELVYSRCLTEVSLEAFRDCALQDLCLGQYPGVNDKWMDVIASQGSSLL 60
           MLPRDISQ IFN LVYSR LT  SLEAFRDCALQDL LG+Y GVND WM VI+SQGSSLL
Sbjct: 75  MLPRDISQLIFNNLVYSRRLTSASLEAFRDCALQDLYLGEYDGVNDNWMGVISSQGSSLL 134

Query: 61  SVDLSGSDVTDSGLIHLKDCSNLQSLDFNFCIQISDGGLEHLRGLSNLTSLSFRRNNAIT 120
           SVDLSGSDVTD GL +LKDC +L SL+ N+C QISD GLE + GLSNLTSLSFRRN++I+
Sbjct: 135 SVDLSGSDVTDFGLTYLKDCESLISLNLNYCDQISDRGLECISGLSNLTSLSFRRNDSIS 194

Query: 121 AQGMKAFAGLINLVKLDLERCTRIHGGLVNLKGLMKLESLNIKWCNCITDSDMKPLSGLT 180
           AQGM AF+GL+NLVKLDLERC  IHGGLV+L+GL KLESLN+KWCNCITD DMKPLS L 
Sbjct: 195 AQGMSAFSGLVNLVKLDLERCPGIHGGLVHLRGLTKLESLNLKWCNCITDYDMKPLSELA 254

Query: 181 NLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACLDSLSALGSLFYLNLNRCQL 240
           +LKSL+IS SKVTD GI++LKGLQKL LLNLEGC VTAACLDSL+ L +L  LNLNRC L
Sbjct: 255 SLKSLEISSSKVTDFGISFLKGLQKLALLNLEGCLVTAACLDSLAELPALSNLNLNRCNL 314

Query: 241 SDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNLDSCGIGDEGLVNLTGLC 300
           SD+GC+K S++ +LKVLNLGFN ITD CLVHLKGLT LESLNLDSC IGDEGLVNL GL 
Sbjct: 315 SDNGCKKISRLENLKVLNLGFNVITDACLVHLKGLTKLESLNLDSCKIGDEGLVNLAGLE 374

Query: 301 NLKCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISDGSLRKLAGLSSLKSLNLDARQI 360
            L CLELSDT+VGS+GL HLSGL++L+ INLSFT ISD SLRKL+GLSSLKSLNLDA QI
Sbjct: 375 QLNCLELSDTEVGSNGLHHLSGLSSLQKINLSFTMISDSSLRKLSGLSSLKSLNLDAYQI 434

Query: 361 TDTGLAALTSLTGLTHLDLFGARITDSGAAYLRNFKNLRSLEICGGGLTDAGVKHIKDLS 420
           TD GLA LTSLTGLT LDLFGARITD G  YL+ FKNLRSLEICGG LTDAGVK+IK+LS
Sbjct: 435 TDAGLANLTSLTGLTDLDLFGARITDFGTNYLKKFKNLRSLEICGGVLTDAGVKNIKELS 494

Query: 421 SLTLLNLSQNCNLTDKTLELISGLTGLVSLNVSNSRITSAGLRHL 465
           SL  LNLSQN NLTDKTLELISGLTGLVSLNVSNSRIT+AGL+HL
Sbjct: 495 SLVCLNLSQNSNLTDKTLELISGLTGLVSLNVSNSRITNAGLQHL 539

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|357458869|ref|XP_003599715.1| F-box/LRR-repeat protein [Medicago truncatula] gi|355488763|gb|AES69966.1| F-box/LRR-repeat protein [Medicago truncatula]

 Score =  663 bits (1711), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 352/473 (74%), Positives = 396/473 (83%), Gaps = 8/473 (1%)

Query: 1   MLPRDISQQIFNELVYSRCLTEVSLEAFRDCALQDLCLGQYPGVNDKWMDVIASQGSSLL 60
           MLPRDISQQI N LVYSR LT  SLEAFRDCALQDL LG+Y GV+D WMDVI+SQGSSLL
Sbjct: 75  MLPRDISQQILNNLVYSRRLTGDSLEAFRDCALQDLYLGEYAGVDDSWMDVISSQGSSLL 134

Query: 61  SVDLSGSDVTDSGLIHLKDCSNLQSLDFNFCIQISDGGLEHLRGLSNLTSLSFRRNNAIT 120
           SVDLS SDVTD GL +L+DC +L SL+ N+C QISD GLE + GLSNLTSLSFRRN++I+
Sbjct: 135 SVDLSASDVTDFGLTYLQDCRSLISLNLNYCDQISDHGLECISGLSNLTSLSFRRNDSIS 194

Query: 121 AQGMKAFAGLINLVKLDLERCTRIHGGLVNLKGLMKLESLNIKWCNCITDSDMKPLSGLT 180
           AQGM AF+ L+NLVKLDLERC  IHGG V+L+GL KLESLN+KWCNCITDSD+KPLS L 
Sbjct: 195 AQGMSAFSRLVNLVKLDLERCPGIHGGTVHLQGLTKLESLNMKWCNCITDSDIKPLSELA 254

Query: 181 NLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACLDSLSA--------LGSLFY 232
           +L SL+ISCSKVTD GI++L+GLQKL LLNLEGC VT+ACLDSLS         L +L  
Sbjct: 255 SLTSLEISCSKVTDFGISFLRGLQKLALLNLEGCLVTSACLDSLSGCHEHTIPKLPALSN 314

Query: 233 LNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNLDSCGIGDEG 292
           LNLNRC +SD GCE+FS++  LKVLNLGFN+I D CL H+KGLT LESLNLDSC IGDEG
Sbjct: 315 LNLNRCNISDRGCERFSRLEKLKVLNLGFNDIGDRCLAHMKGLTKLESLNLDSCKIGDEG 374

Query: 293 LVNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISDGSLRKLAGLSSLKS 352
           L NL G   L CLELSDT+VG+ GL HLSGL++LE INLSFT +SD  LRKL GLSSLKS
Sbjct: 375 LENLAGHKQLICLELSDTEVGNHGLEHLSGLSSLEKINLSFTVVSDSGLRKLCGLSSLKS 434

Query: 353 LNLDARQITDTGLAALTSLTGLTHLDLFGARITDSGAAYLRNFKNLRSLEICGGGLTDAG 412
           LNLDA QITD GLA LTSLTGLT LDLFGARITD G  YL+ FKNLRSLEIC GGLTDAG
Sbjct: 435 LNLDAYQITDAGLATLTSLTGLTDLDLFGARITDVGTNYLKKFKNLRSLEICSGGLTDAG 494

Query: 413 VKHIKDLSSLTLLNLSQNCNLTDKTLELISGLTGLVSLNVSNSRITSAGLRHL 465
           VK+IK+LSSL  LNLSQN NLTDKT+ELI+GLT LVSLN+SN+RITSAGL+HL
Sbjct: 495 VKNIKELSSLMCLNLSQNSNLTDKTVELIAGLTALVSLNLSNTRITSAGLQHL 547

Source: Medicago truncatula

Species: Medicago truncatula

Genus: Medicago

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|388500850|gb|AFK38491.1| unknown [Medicago truncatula]

 Score =  663 bits (1711), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 349/465 (75%), Positives = 393/465 (84%)

Query: 1   MLPRDISQQIFNELVYSRCLTEVSLEAFRDCALQDLCLGQYPGVNDKWMDVIASQGSSLL 60
           MLPRDISQQI N LVYSR LT  SLEAFRDCALQDL LG+Y GV+D WMDVI+SQGSSLL
Sbjct: 75  MLPRDISQQILNNLVYSRRLTGDSLEAFRDCALQDLYLGEYAGVDDSWMDVISSQGSSLL 134

Query: 61  SVDLSGSDVTDSGLIHLKDCSNLQSLDFNFCIQISDGGLEHLRGLSNLTSLSFRRNNAIT 120
           SVDLS SDVTD GL +L+DC +L SL+ N+C QISD GLE + GLSNLTSLSFRRN++I+
Sbjct: 135 SVDLSASDVTDFGLTYLQDCRSLISLNLNYCDQISDHGLECISGLSNLTSLSFRRNDSIS 194

Query: 121 AQGMKAFAGLINLVKLDLERCTRIHGGLVNLKGLMKLESLNIKWCNCITDSDMKPLSGLT 180
           AQGM AF+ L+NLVKLDLERC  IHGG V+L+GL KLESLN+KWCNCITDSD+KPLS L 
Sbjct: 195 AQGMSAFSRLVNLVKLDLERCPGIHGGTVHLQGLTKLESLNMKWCNCITDSDIKPLSELA 254

Query: 181 NLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACLDSLSALGSLFYLNLNRCQL 240
           +L SL+ISCSKVTD GI++L+GLQKL LLNLEGC VT+ACLDSLS L +L  LNLNRC +
Sbjct: 255 SLTSLEISCSKVTDFGISFLRGLQKLALLNLEGCLVTSACLDSLSELPALSNLNLNRCNI 314

Query: 241 SDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNLDSCGIGDEGLVNLTGLC 300
           S  GCE+FS++  LKVLNLGFN+I D CL H+KGLT LESLNLDSC IGDEGL NL G  
Sbjct: 315 SGRGCERFSRLEKLKVLNLGFNDIGDRCLAHMKGLTKLESLNLDSCKIGDEGLENLAGHK 374

Query: 301 NLKCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISDGSLRKLAGLSSLKSLNLDARQI 360
            L CLELSDT+VG+ GL HLSGL++LE INLSFT +SD  LRKL GLSSLKSLNLDA QI
Sbjct: 375 QLICLELSDTEVGNHGLEHLSGLSSLEKINLSFTVVSDSGLRKLCGLSSLKSLNLDAYQI 434

Query: 361 TDTGLAALTSLTGLTHLDLFGARITDSGAAYLRNFKNLRSLEICGGGLTDAGVKHIKDLS 420
           TD GLA LTSLTGLT LDLFGARITD G  YL+ FKNLR LEIC GGLTDAGVK+IK+LS
Sbjct: 435 TDAGLATLTSLTGLTDLDLFGARITDVGTNYLKKFKNLRPLEICSGGLTDAGVKNIKELS 494

Query: 421 SLTLLNLSQNCNLTDKTLELISGLTGLVSLNVSNSRITSAGLRHL 465
           SL  LNLSQN NLTDKT+ELI+GLT LVSLN+SN+RIT AGL+HL
Sbjct: 495 SLMCLNLSQNSNLTDKTVELIAGLTALVSLNLSNTRITFAGLQHL 539

Source: Medicago truncatula

Species: Medicago truncatula

Genus: Medicago

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224120462|ref|XP_002331054.1| predicted protein [Populus trichocarpa] gi|222872984|gb|EEF10115.1| predicted protein [Populus trichocarpa]

 Score =  660 bits (1704), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 343/465 (73%), Positives = 398/465 (85%), Gaps = 1/465 (0%)

Query: 1   MLPRDISQQIFNELVYSRCLTEVSLEAFRDCALQDLCLGQYPGVNDKWMDVIASQGSSLL 60
           MLPRD+SQQIFNELV S  LT  SLEAFRDCALQD+ LG+YPGV D WMDVI+SQGSSLL
Sbjct: 75  MLPRDLSQQIFNELVISHSLTAASLEAFRDCALQDVLLGEYPGVMDSWMDVISSQGSSLL 134

Query: 61  SVDLSGSDVTDSGLIHLKDCSNLQSLDFNFCIQISDGGLEHLRGLSNLTSLSFRRNNAIT 120
           SVDLS SDVTD+GL  LKDCSNLQ++  N+C  ISD GL+HL GL+N+TSLS +++ ++T
Sbjct: 135 SVDLSDSDVTDAGLGLLKDCSNLQAIALNYCNNISDNGLKHLSGLTNITSLSLKKSCSVT 194

Query: 121 AQGMKAFAGLINLVKLDLERCTRIHGGLVNLKGLMKLESLNIKWCNCITDSDMKPLSGLT 180
           A+GM+AF+ L+NL  LD+ERC+ IHGGLV+LKGL KLESLNI+ C CITD DMK +SGLT
Sbjct: 195 AEGMRAFSTLLNLENLDMERCSGIHGGLVHLKGLKKLESLNIRCCKCITDMDMKAISGLT 254

Query: 181 NLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACLDSLSALGSLFYLNLNRCQL 240
           NLK LQIS + VTD G++YL+GLQKL +LNLEGC +T ACLDS+SAL +L YLNLNRC L
Sbjct: 255 NLKELQISNTNVTDVGVSYLRGLQKLIMLNLEGCNITTACLDSISALATLAYLNLNRCHL 314

Query: 241 SDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNLDSCGIGDEGLVNLTGLC 300
            DDGC+KFS + +LKVL+L FN++TD CLVHLKGL NLESLNLDSC IGDEG+ NL GL 
Sbjct: 315 PDDGCDKFSGLKNLKVLSLAFNDVTDACLVHLKGLKNLESLNLDSCRIGDEGIANLAGL- 373

Query: 301 NLKCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISDGSLRKLAGLSSLKSLNLDARQI 360
            LK LELSDT VGSSGLRHLSG+ +LE++NLSFT ++DG LRKL+GL+SL+SLNLDARQI
Sbjct: 374 PLKSLELSDTIVGSSGLRHLSGIPHLENLNLSFTLVTDGGLRKLSGLTSLRSLNLDARQI 433

Query: 361 TDTGLAALTSLTGLTHLDLFGARITDSGAAYLRNFKNLRSLEICGGGLTDAGVKHIKDLS 420
           TD GL ALTSLTGLT LDLFGARITDSG   L+ FKNL+SLEICGGGLTDAGVK+IKDL 
Sbjct: 434 TDAGLTALTSLTGLTRLDLFGARITDSGTNCLKYFKNLKSLEICGGGLTDAGVKNIKDLV 493

Query: 421 SLTLLNLSQNCNLTDKTLELISGLTGLVSLNVSNSRITSAGLRHL 465
            LT+LNLSQN NLTDKTLELISGLT LVSLNVSNS IT+ GLR+L
Sbjct: 494 HLTVLNLSQNTNLTDKTLELISGLTELVSLNVSNSLITNEGLRYL 538

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|182407840|gb|ACB87911.1| F-box-containing protein 1 [Malus x domestica]

 Score =  655 bits (1691), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 344/465 (73%), Positives = 410/465 (88%)

Query: 1   MLPRDISQQIFNELVYSRCLTEVSLEAFRDCALQDLCLGQYPGVNDKWMDVIASQGSSLL 60
           MLPRD+SQQIFNELV S  LT+VSLEAFRDCAL+D+ LG+YP V D WM VI+SQGSSLL
Sbjct: 78  MLPRDVSQQIFNELVCSNSLTDVSLEAFRDCALEDIGLGEYPDVKDSWMGVISSQGSSLL 137

Query: 61  SVDLSGSDVTDSGLIHLKDCSNLQSLDFNFCIQISDGGLEHLRGLSNLTSLSFRRNNAIT 120
           SVDLSGS+VTDSGL  LK CSNLQ+L +N+C  +S+ GL+H+ GLSNLTSLSF+R++AI+
Sbjct: 138 SVDLSGSEVTDSGLALLKGCSNLQALAYNYCDHVSEQGLKHISGLSNLTSLSFKRSDAIS 197

Query: 121 AQGMKAFAGLINLVKLDLERCTRIHGGLVNLKGLMKLESLNIKWCNCITDSDMKPLSGLT 180
           A+GM+AF+GL+NL KLDLERC+ IHGG V+LKGL KL+SLN++ C CITDSD+K +SGL 
Sbjct: 198 AEGMRAFSGLLNLEKLDLERCSAIHGGFVHLKGLKKLKSLNVRCCRCITDSDLKTISGLI 257

Query: 181 NLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACLDSLSALGSLFYLNLNRCQL 240
           +L  LQ+S   +TDSGI+YLKGL KL +LNLEGC VTA+CL S+SAL +L YLNLNRC L
Sbjct: 258 DLNELQLSNCNITDSGISYLKGLHKLRMLNLEGCNVTASCLQSISALVALAYLNLNRCSL 317

Query: 241 SDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNLDSCGIGDEGLVNLTGLC 300
           SD+GC+KFS + +LKVL+LGFNEITD CL++LKGLT+LESLNLDSC IGDEGL NL GL 
Sbjct: 318 SDEGCDKFSGLTNLKVLSLGFNEITDACLMYLKGLTSLESLNLDSCKIGDEGLANLAGLT 377

Query: 301 NLKCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISDGSLRKLAGLSSLKSLNLDARQI 360
           +LK LELSDT+VGS+GLRHLSGL NLES+NLSFT ++D SL++L+GL+SLKSLNLDARQI
Sbjct: 378 HLKNLELSDTEVGSNGLRHLSGLKNLESLNLSFTLVTDSSLKRLSGLTSLKSLNLDARQI 437

Query: 361 TDTGLAALTSLTGLTHLDLFGARITDSGAAYLRNFKNLRSLEICGGGLTDAGVKHIKDLS 420
           TD GLAA+TSLTGLTHLDLFGARI+DSGA +L+ FKNL+SLEICGGGLTDAGVK+IKDL 
Sbjct: 438 TDAGLAAITSLTGLTHLDLFGARISDSGANHLKYFKNLQSLEICGGGLTDAGVKNIKDLV 497

Query: 421 SLTLLNLSQNCNLTDKTLELISGLTGLVSLNVSNSRITSAGLRHL 465
            LT LN+SQNCNLT+K+LELISGLT LVSLNVSNSRIT+ GL+HL
Sbjct: 498 CLTWLNISQNCNLTNKSLELISGLTALVSLNVSNSRITNEGLQHL 542

Source: Malus x domestica

Species: Malus x domestica

Genus: Malus

Family: Rosaceae

Order: Rosales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|357468127|ref|XP_003604348.1| F-box/LRR-repeat protein [Medicago truncatula] gi|355505403|gb|AES86545.1| F-box/LRR-repeat protein [Medicago truncatula]

 Score =  652 bits (1681), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 347/467 (74%), Positives = 390/467 (83%), Gaps = 8/467 (1%)

Query: 1   MLPRDISQQIFNELVYSRCLTEVSLEAFRDCALQDLCLGQYPGVNDKWMDVIASQGSSLL 60
           MLPRDISQQI N LVYSR LT  SLEAFRDCALQDL LG+Y GV+D WMDVI+SQGSSLL
Sbjct: 75  MLPRDISQQILNNLVYSRRLTGDSLEAFRDCALQDLYLGEYAGVDDSWMDVISSQGSSLL 134

Query: 61  SVDLSGSDVTDSGLIHLKDCSNLQSLDFNFC--IQISDGGLEHLRGLSNLTSLSFRRNNA 118
           SVDLS SDVTD GL +L+DC +L SL+ N+C   QI D  L      SNLTSLSFRRN++
Sbjct: 135 SVDLSASDVTDFGLTYLQDCRSLISLNLNYCDKFQIMDWSL------SNLTSLSFRRNDS 188

Query: 119 ITAQGMKAFAGLINLVKLDLERCTRIHGGLVNLKGLMKLESLNIKWCNCITDSDMKPLSG 178
           I+AQGM AF+ L+NLVKLDLERC  IHGG V+L+GL KLESLN+KWCNCITDSD+KPLS 
Sbjct: 189 ISAQGMSAFSRLVNLVKLDLERCPGIHGGTVHLQGLTKLESLNMKWCNCITDSDIKPLSE 248

Query: 179 LTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACLDSLSALGSLFYLNLNRC 238
           L +L SL+ISCSKVTD GI++L+GLQKL LLNLEGC VT+ACLDSLS L +L  LNLNRC
Sbjct: 249 LASLTSLEISCSKVTDFGISFLRGLQKLALLNLEGCLVTSACLDSLSELPALSNLNLNRC 308

Query: 239 QLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNLDSCGIGDEGLVNLTG 298
            +SD GCE+FS++  LKVLNLGFN+I D CL H+KGLT LESLNLDSC IGDEGL NL G
Sbjct: 309 NISDRGCERFSRLEKLKVLNLGFNDIGDRCLAHMKGLTKLESLNLDSCKIGDEGLENLAG 368

Query: 299 LCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISDGSLRKLAGLSSLKSLNLDAR 358
              L CLELSDT+VG+ GL HLSGL++LE INLSFT +SD  LRKL GLSSLKSLNLDA 
Sbjct: 369 HKQLICLELSDTEVGNHGLEHLSGLSSLEKINLSFTVVSDSGLRKLCGLSSLKSLNLDAY 428

Query: 359 QITDTGLAALTSLTGLTHLDLFGARITDSGAAYLRNFKNLRSLEICGGGLTDAGVKHIKD 418
           QITD GLA LTSLTGLT LDLFGARITD G  YL+ FKNLRSLEIC GGLTDAGVK+IK+
Sbjct: 429 QITDAGLATLTSLTGLTDLDLFGARITDVGTNYLKKFKNLRSLEICSGGLTDAGVKNIKE 488

Query: 419 LSSLTLLNLSQNCNLTDKTLELISGLTGLVSLNVSNSRITSAGLRHL 465
           LSSL  LNLSQN NLTDKT+ELI+GLT LVSLN+SN+RITSAGL+HL
Sbjct: 489 LSSLMCLNLSQNSNLTDKTVELIAGLTALVSLNLSNTRITSAGLQHL 535

Source: Medicago truncatula

Species: Medicago truncatula

Genus: Medicago

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|297844484|ref|XP_002890123.1| leucine-rich repeat family protein [Arabidopsis lyrata subsp. lyrata] gi|297335965|gb|EFH66382.1| leucine-rich repeat family protein [Arabidopsis lyrata subsp. lyrata]

 Score =  649 bits (1673), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 360/465 (77%), Positives = 413/465 (88%), Gaps = 1/465 (0%)

Query: 2   LPRDISQQIFNELVYSRCLTEVSLEAFRDCALQDLCLGQYPGVNDKWMDVIASQGSSLLS 61
           LPRDISQQIF+ELVYS+ LT  SLEAFRDCA+QDLCLG+YPGVND WMDVI+SQ +SLLS
Sbjct: 76  LPRDISQQIFDELVYSQRLTLKSLEAFRDCAIQDLCLGEYPGVNDDWMDVISSQSTSLLS 135

Query: 62  VDLSGSDVTDSGLIHLKDCSNLQSLDFNFCIQISDGGLEHLRGLSNLTSLSFRRNNAITA 121
           VD SGSD+TDSGL+ LK C+NL+SL+FNFC QIS+ GLEHL GLSNLTSLSFRRN AITA
Sbjct: 136 VDFSGSDITDSGLVSLKGCTNLESLNFNFCDQISNRGLEHLSGLSNLTSLSFRRNAAITA 195

Query: 122 QGMKAFAGLINLVKLDLERCTRIHGGLVNLKGLMKLESLNIKWCNCITDSDMKPLSGLTN 181
           QGM+A + L+N+ KLDLE+C  IHGGLV+L+GL KLESLNIKWCNCITD+DM+PLS LTN
Sbjct: 196 QGMRALSNLVNMKKLDLEKCPGIHGGLVHLRGLTKLESLNIKWCNCITDADMEPLSELTN 255

Query: 182 LKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCP-VTAACLDSLSALGSLFYLNLNRCQL 240
           L+SLQI CS++TD GI+YLKGL KL LLNLEGC  VTAACLD+L+AL  L +LNLNRC  
Sbjct: 256 LRSLQICCSRITDIGISYLKGLNKLNLLNLEGCRHVTAACLDTLTALTGLMFLNLNRCNF 315

Query: 241 SDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNLDSCGIGDEGLVNLTGLC 300
           SD GCEKFS + +LK+LNLG N IT+ CLVHL+GLT LESLNLDSC IGDEGLV+L+G+ 
Sbjct: 316 SDSGCEKFSDLINLKILNLGMNSITNSCLVHLRGLTKLESLNLDSCRIGDEGLVHLSGML 375

Query: 301 NLKCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISDGSLRKLAGLSSLKSLNLDARQI 360
            LK LELSDT+VGS+GLRHLSGL+NLESINLSFT ++D  LRKL+GL+SL++LNLDAR +
Sbjct: 376 ELKSLELSDTEVGSNGLRHLSGLSNLESINLSFTVVTDSGLRKLSGLTSLRTLNLDARHV 435

Query: 361 TDTGLAALTSLTGLTHLDLFGARITDSGAAYLRNFKNLRSLEICGGGLTDAGVKHIKDLS 420
           TD GL+ALTSLTGLTHLDLFGARITDSG  +LRN K L+SLEICGGGLTD GVK+IKDLS
Sbjct: 436 TDAGLSALTSLTGLTHLDLFGARITDSGTNHLRNLKKLQSLEICGGGLTDTGVKNIKDLS 495

Query: 421 SLTLLNLSQNCNLTDKTLELISGLTGLVSLNVSNSRITSAGLRHL 465
           SLTLLNLSQN NLTDKTLELISGLTGLVSLNVSNSR++S+GLRHL
Sbjct: 496 SLTLLNLSQNSNLTDKTLELISGLTGLVSLNVSNSRVSSSGLRHL 540

Source: Arabidopsis lyrata subsp. lyrata

Species: Arabidopsis lyrata

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	469
TAIR|locus:2036199	585	AT1G15740 [Arabidopsis thalian	0.989	0.793	0.658	3.3e-157
TAIR|locus:2138131	597	AT4G23840 "AT4G23840" [Arabido	0.724	0.569	0.254	8.8e-22
DICTYBASE|DDB_G0291424	902	DDB_G0291424 "Transcription fa	0.639	0.332	0.280	3.5e-18
UNIPROTKB|F1NMM1	345	FBXL14 "Uncharacterized protei	0.614	0.834	0.308	3.9e-17
UNIPROTKB|Q17R01	400	FBXL14 "F-box/LRR-repeat prote	0.571	0.67	0.296	1e-16
MGI|MGI:2141676	400	Fbxl14 "F-box and leucine-rich	0.571	0.67	0.296	1e-16
RGD|1305523	400	Fbxl14 "F-box and leucine-rich	0.571	0.67	0.296	1e-16
UNIPROTKB|Q8N1E6	418	FBXL14 "F-box/LRR-repeat prote	0.571	0.641	0.296	1.2e-16
FB|FBgn0020257	538	ppa "partner of paired" [Droso	0.539	0.470	0.308	1.5e-16
ZFIN|ZDB-GENE-030131-3556	400	fbxl14b "F-box and leucine-ric	0.503	0.59	0.314	4e-16

TAIR|locus:2036199 AT1G15740 [Arabidopsis thaliana (taxid:3702)]

 Score = 1532 (544.3 bits), Expect = 3.3e-157, P = 3.3e-157
 Identities = 306/465 (65%), Positives = 352/465 (75%)

Query:     2 LPRDISQQIFNELVYSRCLTEVSLEAFRDCALQDLCLGQYPGVNDKWMDVIASQXXXXXX 61
             LPRDISQQIF+ELVYS+ LT  SLEAFRDCA+QDL LG+YPGVND WMDVI+SQ      
Sbjct:    83 LPRDISQQIFDELVYSQRLTLKSLEAFRDCAIQDLYLGEYPGVNDDWMDVISSQSTSLLS 142

Query:    62 XXXXXXXXXXXXXIHLKDCSNLQSLDFNFCIQISDGGLEHLRGLSNLTSLSFRRNNAITA 121
                          + LK C+NL+SL+FNFC QIS+ GL HL GLSNLTSLSFRRN AITA
Sbjct:   143 VDFSGSDITDSGLVSLKGCTNLESLNFNFCDQISNRGLVHLSGLSNLTSLSFRRNAAITA 202

Query:   122 QGMKAFAGLINLVKLDLERCTRIHGGLVNLKGLMKLESLNIKWCNCITDSDMKPLSGLTN 181
             QGM+A + L+NL KLDLE+C  I GGLV+L+ L KLESLNIKWCNCITD+DM+PLS LTN
Sbjct:   203 QGMRALSNLVNLKKLDLEKCPGIDGGLVHLRALTKLESLNIKWCNCITDADMEPLSVLTN 262

Query:   182 LKSLQISCSKVTDSGIAYXXXXXXXXXXXXEGCP-VTAACLDSLSALGSLFYLNLNRCQL 240
             L+SLQI CSK+TD GI+Y            EGC  VTAACLD+L+AL  L YLNLNRC  
Sbjct:   263 LRSLQICCSKITDIGISYLKGLNKLNLLNLEGCRHVTAACLDTLTALAGLMYLNLNRCNF 322

Query:   241 SDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNLDSCGIGDEGLVNLTGLC 300
             SD GCEKFS + +LK+LNLG N IT+ CLVHLKGLT LESLNLDSC IGDEGLV+L+G+ 
Sbjct:   323 SDSGCEKFSDLINLKILNLGMNNITNSCLVHLKGLTKLESLNLDSCRIGDEGLVHLSGML 382

Query:   301 NLKCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISDGSLRKLAGLSSLKSLNLDARQI 360
              LK LELSDT+VGS+GLRHLSGL+NLESINLSFT ++D  LRKL+GL+SL++LNLDAR +
Sbjct:   383 ELKSLELSDTEVGSNGLRHLSGLSNLESINLSFTVVTDSGLRKLSGLTSLRTLNLDARHV 442

Query:   361 XXXXXXXXXXXXXXXXXDLFGARITDSGAAYLRNFKNLRSLEICGGGLTDAGVKHIKDXX 420
                              DLFGARITDSG  +LRN K L+SLEICGGGLTD GVK+IKD  
Sbjct:   443 TDAGLSALTSLTGLTHLDLFGARITDSGTNHLRNLKKLQSLEICGGGLTDTGVKNIKDLS 502

Query:   421 XXXXXXXXXXXXXTDKTLELISGLTGLVSLNVSNSRITSAGLRHL 465
                          TDKTLELISGLTGLVSLNVSNSR++S+GLRHL
Sbjct:   503 SLTLLNLSQNSNLTDKTLELISGLTGLVSLNVSNSRVSSSGLRHL 547

GO:0005886 "plasma membrane" evidence=ISM

TAIR|locus:2138131 AT4G23840 "AT4G23840" [Arabidopsis thaliana (taxid:3702)]

 Score = 253 (94.1 bits), Expect = 8.8e-22, Sum P(2) = 8.8e-22
 Identities = 92/361 (25%), Positives = 159/361 (44%)

Query:     2 LPRDISQQIFNELVYSRCLTEVSLEAFRDCALQDLCLGQYPGVNDKWMDVIASQXXXXXX 61
             LP  ++  +   L+  R L    LE F+  +++++ L     VN +WM  I         
Sbjct:    33 LPPHLADALLRRLLKKRLLFPSLLEGFK-YSVENIDLRGKSSVNAEWMAYIGGFVNLITL 91

Query:    62 XXXXXXXXXXXXXIHLKDCSNLQSLDFNFCIQISDGGLEHLRGLSNLTSLSFRRNNAITA 121
                            +   ++L  LD + C +++D G++HL+ + NL  L   +   +T 
Sbjct:    92 NLSDCQRINSSTLWPITGLTSLTELDLSRCFKVTDAGMKHLQSVVNLKKLWISQTG-VTE 150

Query:   122 QGMKAFAGLINLVKLDLERCTRIHGGLVNLKGLMKLESLNIKWCNCITDSDMKPLSGLTN 181
              G+   A L  L  LDL         L++L+ L KLE L+I W + +T+     +   +N
Sbjct:   151 VGISLLASLKKLSLLDLGGLPVTDQNLISLQALTKLEYLDI-WGSNVTNQGAVSILKFSN 209

Query:   182 LKSLQISCSKVTDSGIAYXXXXXXXXXXXXEGCPVTAACLDSLSAL---GSLFYLNLNRC 238
             L  L +S + +T +                   P T + L SL  L   G+ F       
Sbjct:   210 LSFLNLSWTSITQTPNIPHLECLHMNTCTIVSEPKTHSSLASLKKLVLSGANFSAETESL 269

Query:   239 QLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNLDSCGIGDE--GLVNL 296
               ++  C  +  +    + N  F          L+ + NLE L+L S   GD+  G V  
Sbjct:   270 SFTNKSCITYLDVSKTSLKNFSF----------LETMFNLEHLDLSSTAFGDDSVGFVAC 319

Query:   297 TGLCNLKCLELSDTQVGSSGLRHLSG-LTNLESINLSFTGISDGSLRKLAG-LSSLKSLN 354
              G  NLK L +SDTQ+  SG+ +L+G +  LE++++S T + D S+  ++  +  +K+L+
Sbjct:   320 VGE-NLKNLNVSDTQITPSGVGNLAGHVPQLETLSMSQTFVDDLSILLISTTMPCIKALD 378

Query:   355 L 355
             L
Sbjct:   379 L 379

GO:0005575 "cellular_component" evidence=ND

DICTYBASE|DDB_G0291424 DDB_G0291424 "Transcription factor SKN7" [Dictyostelium discoideum (taxid:44689)]

 Score = 249 (92.7 bits), Expect = 3.5e-18, P = 3.5e-18
 Identities = 89/317 (28%), Positives = 136/317 (42%)

Query:     2 LPRDISQQIFNELVYSRCLTEVSLEAFRDCALQDLCL-GQYPGVNDKWMDVIAS--QXXX 58
             LP ++ Q+I       + L+  +L  FR+C L  L L G+   +ND+W+++     +   
Sbjct:   381 LPDELCQKIIPLFQRRKILSLKTLSLFRNCKLSRLELYGKEIAINDEWLNITKGLMKSTL 440

Query:    59 XXXXXXXXXXXXXXXXIHLKDCSNLQSLDFNFCIQISDGGLEHL--RGLSNLTSLSFRRN 116
                               L   + L SLD ++C +I   GLE L   G+  L  L    N
Sbjct:   441 SSINISKNNSLTDQGIASLSSLAKLSSLDISYCEKIDGTGLEPLVDAGVP-LQKLHMEGN 499

Query:   117 NAITAQGMKAFAGLINLVKLDLERC---TRIHGGLVN-LKGLMKLESLNIKWCNCITDSD 172
             +++    +K F  L  L  L+   C   T I   +   L  L  L  L++     + +  
Sbjct:   500 SSLNL--VKVFNSLSKLKTLN-SLCVGNTNITDDMCKPLSLLTTLTHLDVARNTQLGNQG 556

Query:   173 MKPLSGLTNLKSLQISC-SKVTDSGIAYXXXXXXXXXXXXEGCPVTAACLDSLSALGSLF 231
             ++ +S   NL  L ISC +K+   GI +            E C +    +  +  L SL 
Sbjct:   557 LESISKCVNLIDLDISCCTKINALGIRHLGSLSNLQSLSAENCAIDDESMKYIGTLKSLS 616

Query:   232 YLNLNRCQLSDDGCEKFSKIGSLKVLNLGF-NEITDECLVHLKGLTNLESLNLDSCG-IG 289
              L+L     SD G +    +  L  L+L     ITD  LVH K LT +  LNL+ CG + 
Sbjct:   617 SLSLINNPFSDTGAKNIGNLTLLTTLDLSMCANITDAALVHFKNLTQISKLNLNFCGNLT 676

Query:   290 DEGLVNLTG-LCNLKCL 305
             D G+ +LTG L  LK L
Sbjct:   677 DSGVTSLTGGLGQLKTL 693

GO:0035556 "intracellular signal transduction" evidence=IEA

GO:0006355 "regulation of transcription, DNA-dependent" evidence=IEA

GO:0000160 "phosphorelay signal transduction system" evidence=IEA

GO:0000156 "phosphorelay response regulator activity" evidence=IEA

UNIPROTKB|F1NMM1 FBXL14 "Uncharacterized protein" [Gallus gallus (taxid:9031)]

 Score = 229 (85.7 bits), Expect = 3.9e-17, P = 3.9e-17
 Identities = 100/324 (30%), Positives = 155/324 (47%)

Query:   102 LRGLSNLTSLSFRRNNAITAQGM-KAF-AGLINLVKLDLERCTRI-HGGLVNLKGLMK-L 157
             ++G++++ SL+      +T  G+  AF A + +L  L+L  C +I    L  +   +K L
Sbjct:    19 IQGMADIESLNLSGCYNLTDNGLGHAFVAEISSLRSLNLSLCKQITDSSLGRIAQYLKGL 78

Query:   158 ESLNIKWCNCITDSDMKPLS-GLTNLKSLQI-SCSKVTDSGIAYXXXXXXXXXXXXEGCP 215
             E L +  C+ IT++ +  ++ GL  LKSL + SC  ++D GI +            EGC 
Sbjct:    79 EVLELGGCSNITNTGLLLIAWGLQRLKSLNLRSCRHLSDVGIGHLAGMTRSAA---EGC- 134

Query:   216 VTAACLDSLSALGSLFYLNLNRCQ-LSDDGCEKFSK-IGSLKVLNLGF-NEITDECLVHL 272
                        LG L  L L  CQ LSD   +  ++ +G L+ LNL F   I+D  L+HL
Sbjct:   135 -----------LG-LEQLTLQDCQKLSDLSIKHLARGLGRLRQLNLSFCGGISDAGLLHL 182

Query:   273 KGLTNLESLNLDSC-GIGDEGLVNLT-GLCNLKCLELSDT-QVGSSGLRHLS-GLTNLES 328
               +++L SLNL SC  I D G+++L  G   L  L++S   +VG   L +++ GL  L S
Sbjct:   183 SHMSSLRSLNLRSCDNISDTGIMHLAMGSLRLSGLDVSFCDKVGDQSLAYIAQGLDGLRS 242

Query:   329 INLSFTGISD-GSLRKLAGLSSLKSLNLD--ARQIXXXXXXXXXXXXXXXXXDLFGA-RI 384
             ++L    ISD G  R +  +  L++LN+    R                   DL+G  RI
Sbjct:   243 LSLCSCHISDEGINRMVRQMHGLRTLNIGQCVRITDKGLELIAEHLSQLTGIDLYGCTRI 302

Query:   385 TDSGAAYLRNFKNLRSLEICGGGL 408
             T  G   L     L  L++   GL
Sbjct:   303 TKRG---LERITQLPCLKVLNLGL 323

GO:0004842 "ubiquitin-protein ligase activity" evidence=IEA

GO:0005737 "cytoplasm" evidence=IEA

GO:0042787 "protein ubiquitination involved in ubiquitin-dependent protein catabolic process" evidence=IEA

UNIPROTKB|Q17R01 FBXL14 "F-box/LRR-repeat protein 14" [Bos taurus (taxid:9913)]

 Score = 229 (85.7 bits), Expect = 1.0e-16, P = 1.0e-16
 Identities = 93/314 (29%), Positives = 148/314 (47%)

Query:   176 LSGLTNLKSLQIS-CSKVTDSGIAYXXXXXXXXXXXXEGCPVTAACLDSLSALGSLFYLN 234
             + G+ N++SL +S C  +TD+G+ +                        +  +GSL  LN
Sbjct:    86 IQGMANIESLNLSGCYNLTDNGLGHAF----------------------VQEIGSLRALN 123

Query:   235 LNRC-QLSDDGCEKFSK-IGSLKVLNLG-FNEITDECLVHLK-GLTNLESLNLDSCG-IG 289
             L+ C Q++D    + ++ +  L+VL LG  + IT+  L+ +  GL  L+SLNL SC  + 
Sbjct:   124 LSLCKQITDSSLGRIAQYLKGLEVLELGGCSNITNTGLLLIAWGLQRLKSLNLRSCRHLS 183

Query:   290 DEGLVNLTGL-------C-NLKCLELSDTQ-VGSSGLRHLS-GLTNLESINLSFTG-ISD 338
             D G+ +L G+       C  L+ L L D Q +    L+H+S GLT L  +NLSF G ISD
Sbjct:   184 DVGIGHLAGMTRSAAEGCLGLEQLTLQDCQKLTDLSLKHISRGLTGLRLLNLSFCGGISD 243

Query:   339 GSLRKLAGLSSLKSLNLDARQIXXXXXXXXXXXXXXXXXDL---FGARITDSGAAYL-RN 394
               L  L+ + SL+SLNL +                     L   F  ++ D   AY+ + 
Sbjct:   244 AGLLHLSHMGSLRSLNLRSCDNISDTGIMHLAMGSLRLSGLDVSFCDKVGDQSLAYIAQG 303

Query:   395 FKNLRSLEICGGGLTDAGVKH-IKDXXXXXXXXXXXXXXXTDKTLELISG-LTGLVSLNV 452
                L+SL +C   ++D G+   ++                TDK LELI+  L+ L  +++
Sbjct:   304 LDGLKSLSLCSCHISDDGINRMVRQMHGLRTLNIGQCVRITDKGLELIAEHLSQLTGIDL 363

Query:   453 SN-SRITSAGLRHL 465
                +RIT  GL  +
Sbjct:   364 YGCTRITKRGLERI 377

GO:0004842 "ubiquitin-protein ligase activity" evidence=ISS

GO:0005737 "cytoplasm" evidence=ISS

GO:0042787 "protein ubiquitination involved in ubiquitin-dependent protein catabolic process" evidence=ISS

MGI|MGI:2141676 Fbxl14 "F-box and leucine-rich repeat protein 14" [Mus musculus (taxid:10090)]

 Score = 229 (85.7 bits), Expect = 1.0e-16, P = 1.0e-16
 Identities = 93/314 (29%), Positives = 148/314 (47%)

Query:   176 LSGLTNLKSLQIS-CSKVTDSGIAYXXXXXXXXXXXXEGCPVTAACLDSLSALGSLFYLN 234
             + G+ N++SL +S C  +TD+G+ +                        +  +GSL  LN
Sbjct:    86 IQGMANIESLNLSGCYNLTDNGLGHAF----------------------VQEIGSLRALN 123

Query:   235 LNRC-QLSDDGCEKFSK-IGSLKVLNLG-FNEITDECLVHLK-GLTNLESLNLDSCG-IG 289
             L+ C Q++D    + ++ +  L+VL LG  + IT+  L+ +  GL  L+SLNL SC  + 
Sbjct:   124 LSLCKQITDSSLGRIAQYLKGLEVLELGGCSNITNTGLLLIAWGLQRLKSLNLRSCRHLS 183

Query:   290 DEGLVNLTGL-------C-NLKCLELSDTQ-VGSSGLRHLS-GLTNLESINLSFTG-ISD 338
             D G+ +L G+       C  L+ L L D Q +    L+H+S GLT L  +NLSF G ISD
Sbjct:   184 DVGIGHLAGMTRSAAEGCLGLEQLTLQDCQKLTDLSLKHISRGLTGLRLLNLSFCGGISD 243

Query:   339 GSLRKLAGLSSLKSLNLDARQIXXXXXXXXXXXXXXXXXDL---FGARITDSGAAYL-RN 394
               L  L+ + SL+SLNL +                     L   F  ++ D   AY+ + 
Sbjct:   244 AGLLHLSHMGSLRSLNLRSCDNISDTGIMHLAMGSLRLSGLDVSFCDKVGDQSLAYIAQG 303

Query:   395 FKNLRSLEICGGGLTDAGVKH-IKDXXXXXXXXXXXXXXXTDKTLELISG-LTGLVSLNV 452
                L+SL +C   ++D G+   ++                TDK LELI+  L+ L  +++
Sbjct:   304 LDGLKSLSLCSCHISDDGINRMVRQMHGLRTLNIGQCVRITDKGLELIAEHLSQLTGIDL 363

Query:   453 SN-SRITSAGLRHL 465
                +RIT  GL  +
Sbjct:   364 YGCTRITKRGLERI 377

GO:0004842 "ubiquitin-protein ligase activity" evidence=ISO

GO:0005737 "cytoplasm" evidence=ISO

GO:0042787 "protein ubiquitination involved in ubiquitin-dependent protein catabolic process" evidence=ISO

RGD|1305523 Fbxl14 "F-box and leucine-rich repeat protein 14" [Rattus norvegicus (taxid:10116)]

 Score = 229 (85.7 bits), Expect = 1.0e-16, P = 1.0e-16
 Identities = 93/314 (29%), Positives = 148/314 (47%)

Query:   176 LSGLTNLKSLQIS-CSKVTDSGIAYXXXXXXXXXXXXEGCPVTAACLDSLSALGSLFYLN 234
             + G+ N++SL +S C  +TD+G+ +                        +  +GSL  LN
Sbjct:    86 IQGMANIESLNLSGCYNLTDNGLGHAF----------------------VQEIGSLRALN 123

Query:   235 LNRC-QLSDDGCEKFSK-IGSLKVLNLG-FNEITDECLVHLK-GLTNLESLNLDSCG-IG 289
             L+ C Q++D    + ++ +  L+VL LG  + IT+  L+ +  GL  L+SLNL SC  + 
Sbjct:   124 LSLCKQITDSSLGRIAQYLKGLEVLELGGCSNITNTGLLLIAWGLQRLKSLNLRSCRHLS 183

Query:   290 DEGLVNLTGL-------C-NLKCLELSDTQ-VGSSGLRHLS-GLTNLESINLSFTG-ISD 338
             D G+ +L G+       C  L+ L L D Q +    L+H+S GLT L  +NLSF G ISD
Sbjct:   184 DVGIGHLAGMTRSAAEGCLGLEQLTLQDCQKLTDLSLKHISRGLTGLRLLNLSFCGGISD 243

Query:   339 GSLRKLAGLSSLKSLNLDARQIXXXXXXXXXXXXXXXXXDL---FGARITDSGAAYL-RN 394
               L  L+ + SL+SLNL +                     L   F  ++ D   AY+ + 
Sbjct:   244 AGLLHLSHMGSLRSLNLRSCDNISDTGIMHLAMGSLRLSGLDVSFCDKVGDQSLAYIAQG 303

Query:   395 FKNLRSLEICGGGLTDAGVKH-IKDXXXXXXXXXXXXXXXTDKTLELISG-LTGLVSLNV 452
                L+SL +C   ++D G+   ++                TDK LELI+  L+ L  +++
Sbjct:   304 LDGLKSLSLCSCHISDDGINRMVRQMHGLRTLNIGQCVRITDKGLELIAEHLSQLTGIDL 363

Query:   453 SN-SRITSAGLRHL 465
                +RIT  GL  +
Sbjct:   364 YGCTRITKRGLERI 377

GO:0004842 "ubiquitin-protein ligase activity" evidence=ISO

GO:0005737 "cytoplasm" evidence=ISO

GO:0042787 "protein ubiquitination involved in ubiquitin-dependent protein catabolic process" evidence=ISO

UNIPROTKB|Q8N1E6 FBXL14 "F-box/LRR-repeat protein 14" [Homo sapiens (taxid:9606)]

 Score = 229 (85.7 bits), Expect = 1.2e-16, P = 1.2e-16
 Identities = 93/314 (29%), Positives = 148/314 (47%)

Query:   176 LSGLTNLKSLQIS-CSKVTDSGIAYXXXXXXXXXXXXEGCPVTAACLDSLSALGSLFYLN 234
             + G+ N++SL +S C  +TD+G+ +                        +  +GSL  LN
Sbjct:    86 IQGMANIESLNLSGCYNLTDNGLGHAF----------------------VQEIGSLRALN 123

Query:   235 LNRC-QLSDDGCEKFSK-IGSLKVLNLG-FNEITDECLVHLK-GLTNLESLNLDSCG-IG 289
             L+ C Q++D    + ++ +  L+VL LG  + IT+  L+ +  GL  L+SLNL SC  + 
Sbjct:   124 LSLCKQITDSSLGRIAQYLKGLEVLELGGCSNITNTGLLLIAWGLQRLKSLNLRSCRHLS 183

Query:   290 DEGLVNLTGL-------C-NLKCLELSDTQ-VGSSGLRHLS-GLTNLESINLSFTG-ISD 338
             D G+ +L G+       C  L+ L L D Q +    L+H+S GLT L  +NLSF G ISD
Sbjct:   184 DVGIGHLAGMTRSAAEGCLGLEQLTLQDCQKLTDLSLKHISRGLTGLRLLNLSFCGGISD 243

Query:   339 GSLRKLAGLSSLKSLNLDARQIXXXXXXXXXXXXXXXXXDL---FGARITDSGAAYL-RN 394
               L  L+ + SL+SLNL +                     L   F  ++ D   AY+ + 
Sbjct:   244 AGLLHLSHMGSLRSLNLRSCDNISDTGIMHLAMGSLRLSGLDVSFCDKVGDQSLAYIAQG 303

Query:   395 FKNLRSLEICGGGLTDAGVKH-IKDXXXXXXXXXXXXXXXTDKTLELISG-LTGLVSLNV 452
                L+SL +C   ++D G+   ++                TDK LELI+  L+ L  +++
Sbjct:   304 LDGLKSLSLCSCHISDDGINRMVRQMHGLRTLNIGQCVRITDKGLELIAEHLSQLTGIDL 363

Query:   453 SN-SRITSAGLRHL 465
                +RIT  GL  +
Sbjct:   364 YGCTRITKRGLERI 377

GO:0005515 "protein binding" evidence=IPI

GO:0042787 "protein ubiquitination involved in ubiquitin-dependent protein catabolic process" evidence=IDA

GO:0005737 "cytoplasm" evidence=IDA

GO:0004842 "ubiquitin-protein ligase activity" evidence=IDA

FB|FBgn0020257 ppa "partner of paired" [Drosophila melanogaster (taxid:7227)]

 Score = 231 (86.4 bits), Expect = 1.5e-16, P = 1.5e-16
 Identities = 92/298 (30%), Positives = 150/298 (50%)

Query:    79 DCSNLQSLDFNFCIQISDGGLEHL-RGLSNLTSLSFRRNNAITAQGMKAFA-GLINLVKL 136
             D  NL++LD + C QI+D  L  + + L NL +L       IT  G+   A GL  L  L
Sbjct:   259 DLPNLKTLDLSLCKQITDTSLGRIAQHLRNLETLELGGCCNITNTGLLLIAWGLKKLKHL 318

Query:   137 DLERCTRIHG-GLVNLKGL--------MKLESLNIKWCNCITDSDMKPLS-GLTNLKSLQ 186
             +L  C  I   G+ +L G         ++LE L ++ C  ++D  +  ++ GLT+LKS+ 
Sbjct:   319 NLRSCWHISDQGIGHLAGFSRETAEGNLQLEYLGLQDCQRLSDEALGHIAQGLTSLKSIN 378

Query:   187 IS-CSKVTDSGIAYXXXXXXXXXXXXEGCPVTAACLDSLSALGSLFYLNLNRCQ-LSDDG 244
             +S C  VTDSG+ +                        L+ +  L  LNL  C  +SD G
Sbjct:   379 LSFCVSVTDSGLKH------------------------LARMPKLEQLNLRSCDNISDIG 414

Query:   245 CEKFSKIGS-LKVLNLGF-NEITDECLVHL-KGLTNLESLNLDSCGIGDEGLVNLT-GLC 300
                 ++ GS +  L++ F ++I+D+ L H+ +GL  L SL+L+ C I D G++ +   L 
Sbjct:   415 MAYLTEGGSGINSLDVSFCDKISDQALTHIAQGLYRLRSLSLNQCQITDHGMLKIAKALH 474

Query:   301 NLKCLELSD-TQVGSSGLRHLS-GLTNLESINL-SFTGISDGSLRKLAGLSSLKSLNL 355
              L+ L +   +++   GL+ L+  LTNL++I+L   T +S   +  +  L  L+ LNL
Sbjct:   475 ELENLNIGQCSRITDKGLQTLAEDLTNLKTIDLYGCTQLSSKGIDIIMKLPKLQKLNL 532

GO:0000152 "nuclear ubiquitin ligase complex" evidence=ISS

GO:0006511 "ubiquitin-dependent protein catabolic process" evidence=NAS

GO:0019005 "SCF ubiquitin ligase complex" evidence=NAS

ZFIN|ZDB-GENE-030131-3556 fbxl14b "F-box and leucine-rich repeat protein 14b" [Danio rerio (taxid:7955)]

 Score = 224 (83.9 bits), Expect = 4.0e-16, P = 4.0e-16
 Identities = 83/264 (31%), Positives = 133/264 (50%)

Query:   103 RGLSNLTSLSFRRNNAITAQGMKAFAGLINLVKLDLERCTRI--HG-GLVNLKGLMKLES 159
             RG+  +  LS RR+ +   QGM       N+  L+L  C  +  +G G   ++ +  L  
Sbjct:    68 RGIRRVQILSLRRSLSYVIQGMP------NIESLNLSGCYNLTDNGLGHAFVQEIPSLRV 121

Query:   160 LNIKWCNCITDSDMKPLSG-LTNLKSLQIS-CSKVTDSGIAYXX-XXXXXXXXXXEGCP- 215
             LN+  C  ITDS +  ++  L NL+ L++  CS +T++G+                 C  
Sbjct:   122 LNLSLCKQITDSSLGRIAQYLKNLEVLELGGCSNITNTGLLLIAWGLHRLKSLNLRSCRH 181

Query:   216 VTAACLDSLSAL------G--SLFYLNLNRCQ-LSDDGCEKFSK-IGSLKVLNLGF-NEI 264
             V+   +  L+ +      G  SL YL L  CQ L+D   +  SK +  LKVLNL F   I
Sbjct:   182 VSDVGIGHLAGMTRSAAEGCLSLEYLTLQDCQKLTDLSLKHISKGLTKLKVLNLSFCGGI 241

Query:   265 TDECLVHLKGLTNLESLNLDSC-GIGDEGLVNLT-GLCNLKCLELSDT-QVGSSGLRHLS 321
             +D  ++HL  +T+L SLNL SC  I D G+++L  G   L  L++S   ++G   L +++
Sbjct:   242 SDAGMIHLSHMTSLWSLNLRSCDNISDTGIMHLAMGTLRLSGLDVSFCDKIGDQSLAYIA 301

Query:   322 -GLTNLESINLSFTGISDGSLRKL 344
              GL  L+S++L    ISD  + ++
Sbjct:   302 QGLYQLKSLSLCSCHISDDGINRM 325

GO:0004842 "ubiquitin-protein ligase activity" evidence=IC

GO:0019005 "SCF ubiquitin ligase complex" evidence=IPI

GO:0016567 "protein ubiquitination" evidence=IC

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Your Input:
	GSVIVG00003249001	SubName- Full=Chromosome undetermined scaffold_141, whole genome shotgun sequence; (578 aa)
		(Vitis vinifera)
Predicted Functional Partners:
	GSVIVG00037306001	SubName- Full=Chromosome undetermined scaffold_87, whole genome shotgun sequence; (446 aa)			•						0.412

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Length	Definition	E-value
Query	469
cd00116	319	cd00116, LRR_RI, Leucine-rich repeats (LRRs), ribo	2e-09
PLN00113	968	PLN00113, PLN00113, leucine-rich repeat receptor-l	4e-07
cd09293	226	cd09293, AMN1, Antagonist of mitotic exit network	5e-06
PLN00113	968	PLN00113, PLN00113, leucine-rich repeat receptor-l	7e-06
PLN00113	968	PLN00113, PLN00113, leucine-rich repeat receptor-l	8e-06
cd09293	226	cd09293, AMN1, Antagonist of mitotic exit network	9e-06
cd00116	319	cd00116, LRR_RI, Leucine-rich repeats (LRRs), ribo	7e-05
cd09293	226	cd09293, AMN1, Antagonist of mitotic exit network	6e-04
cd00116	319	cd00116, LRR_RI, Leucine-rich repeats (LRRs), ribo	0.001
cd09293	226	cd09293, AMN1, Antagonist of mitotic exit network	0.001
pfam13855	60	pfam13855, LRR_8, Leucine rich repeat	0.003

>gnl|CDD|238064 cd00116, LRR_RI, Leucine-rich repeats (LRRs), ribonuclease inhibitor (RI)-like subfamily

 Score = 58.5 bits (142), Expect = 2e-09
 Identities = 68/252 (26%), Positives = 100/252 (39%), Gaps = 46/252 (18%)

Query: 206 LTLLNLEGCP-VTAACLDSLSALGSLFYLNLNRCQLSDDGC---EKFSKIGSLKVLNLGF 261
           L+L      P    + L  L+    L  L+L+   L  DGC   E   +  SL+ L L  
Sbjct: 58  LSLNETGRIPRGLQSLLQGLTKGCGLQELDLSDNALGPDGCGVLESLLRSSSLQELKLNN 117

Query: 262 NEITDECLVHL-KGLT----NLESLNLDSCGIGDEGLVNLTGL----CNLKCLELSDTQV 312
           N + D  L  L KGL      LE L L    +       L        +LK L L++  +
Sbjct: 118 NGLGDRGLRLLAKGLKDLPPALEKLVLGRNRLEGASCEALAKALRANRDLKELNLANNGI 177

Query: 313 GSSGLRHLSGLTNLESINLSFTGISDGSLRKLAGLSSLKSLNLDARQITDTGLAALT--- 369
           G +G+R L                       L    +L+ L+L+   +TD G +AL    
Sbjct: 178 GDAGIRAL--------------------AEGLKANCNLEVLDLNNNGLTDEGASALAETL 217

Query: 370 -SLTGLTHLDLFGARITDSGAAYLRN-----FKNLRSLEICGGGLTDAGVKH----IKDL 419
            SL  L  L+L    +TD+GAA L +       +L +L +    +TD G K     + + 
Sbjct: 218 ASLKSLEVLNLGDNNLTDAGAAALASALLSPNISLLTLSLSCNDITDDGAKDLAEVLAEK 277

Query: 420 SSLTLLNLSQNC 431
            SL  L+L  N 
Sbjct: 278 ESLLELDLRGNK 289

LRRs are 20-29 residue sequence motifs present in many proteins that participate in protein-protein interactions and have different functions and cellular locations. LRRs correspond to structural units consisting of a beta strand (LxxLxLxxN/CxL conserved pattern) and an alpha helix. This alignment contains 12 strands corresponding to 11 full repeats, consistent with the extent observed in the subfamily acting as Ran GTPase Activating Proteins (RanGAP1). Length = 319

>gnl|CDD|215061 PLN00113, PLN00113, leucine-rich repeat receptor-like protein kinase; Provisional

 Score = 52.5 bits (126), Expect = 4e-07
 Identities = 62/235 (26%), Positives = 105/235 (44%)

Query: 175 PLSGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACLDSLSALGSLFYLN 234
           P   + NL++L +S + ++      +     L +L+L G  +     +SL+ L SL +L 
Sbjct: 135 PRGSIPNLETLDLSNNMLSGEIPNDIGSFSSLKVLDLGGNVLVGKIPNSLTNLTSLEFLT 194

Query: 235 LNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNLDSCGIGDEGLV 294
           L   QL      +  ++ SLK + LG+N ++ E    + GLT+L  L+L    +      
Sbjct: 195 LASNQLVGQIPRELGQMKSLKWIYLGYNNLSGEIPYEIGGLTSLNHLDLVYNNLTGPIPS 254

Query: 295 NLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISDGSLRKLAGLSSLKSLN 354
           +L  L NL+ L L   ++       +  L  L S++LS   +S      +  L +L+ L+
Sbjct: 255 SLGNLKNLQYLFLYQNKLSGPIPPSIFSLQKLISLDLSDNSLSGEIPELVIQLQNLEILH 314

Query: 355 LDARQITDTGLAALTSLTGLTHLDLFGARITDSGAAYLRNFKNLRSLEICGGGLT 409
           L +   T     ALTSL  L  L L+  + +      L    NL  L++    LT
Sbjct: 315 LFSNNFTGKIPVALTSLPRLQVLQLWSNKFSGEIPKNLGKHNNLTVLDLSTNNLT 369

Length = 968

>gnl|CDD|187754 cd09293, AMN1, Antagonist of mitotic exit network protein 1

 Score = 47.3 bits (113), Expect = 5e-06
 Identities = 52/163 (31%), Positives = 77/163 (47%), Gaps = 11/163 (6%)

Query: 301 NLKCLELSDTQVGSSGLRHLSGLTNLESINL-SFTGISDGSLRKLA-GLSSLKSLNLDA- 357
            L+ LEL    +    L  LS    L+ + L     I D  L  LA    +L+ L+L A 
Sbjct: 29  GLEWLELYMCPISDPPLDQLSNCNKLKKLILPGSKLIDDEGLIALAQSCPNLQVLDLRAC 88

Query: 358 RQITDTGLAAL-TSLTGLTHLDL----FGARITDSGAAYL-RNFKNLRSLEICGGGLTDA 411
             ITD+G+ AL T+   L  ++L     G  ITD   + L +N   L+++   G  +TD 
Sbjct: 89  ENITDSGIVALATNCPKLQTINLGRHRNGHLITDVSLSALGKNCTFLQTVGFAGCDVTDK 148

Query: 412 GVKHIKDLSSLTLLNLSQN-C-NLTDKTLELISGLTGLVSLNV 452
           GV  +    S +L  LS N C NLTD+++  I       +L+V
Sbjct: 149 GVWELASGCSKSLERLSLNNCRNLTDQSIPAILASNYFPNLSV 191

Amn1 has been functionally characterized in Saccharomyces cerevisiae as a component of the Antagonist of MEN pathway (AMEN). The AMEN network is activated by MEN (mitotic exit network) via an active Cdc14, and in turn switches off MEN. Amn1 constitutes one of the alternative mechanisms by which MEN may be disrupted. Specifically, Amn1 binds Tem1 (Termination of M-phase, a GTPase that belongs to the RAS superfamily), and disrupts its association with Cdc15, the primary downstream target. Amn1 is a leucine-rich repeat (LRR) protein, with 12 repeats in the S. cerevisiae ortholog. As a negative regulator of the signal transduction pathway MEN, overexpression of AMN1 slows the growth of wild type cells. The function of the vertebrate members of this family has not been determined experimentally, they have fewer LRRs that determine the extent of this model. Length = 226

>gnl|CDD|215061 PLN00113, PLN00113, leucine-rich repeat receptor-like protein kinase; Provisional

 Score = 48.3 bits (115), Expect = 7e-06
 Identities = 56/230 (24%), Positives = 111/230 (48%), Gaps = 3/230 (1%)

Query: 229 SLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNLDSCGI 288
           SL YLNL+    +  G      I +L+ L+L  N ++ E    +   ++L+ L+L    +
Sbjct: 119 SLRYLNLSNNNFT--GSIPRGSIPNLETLDLSNNMLSGEIPNDIGSFSSLKVLDLGGNVL 176

Query: 289 GDEGLVNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISDGSLRKLAGLS 348
             +   +LT L +L+ L L+  Q+     R L  + +L+ I L +  +S     ++ GL+
Sbjct: 177 VGKIPNSLTNLTSLEFLTLASNQLVGQIPRELGQMKSLKWIYLGYNNLSGEIPYEIGGLT 236

Query: 349 SLKSLNLDARQITDTGLAALTSLTGLTHLDLFGARITDSGAAYLRNFKNLRSLEICGGGL 408
           SL  L+L    +T    ++L +L  L +L L+  +++      + + + L SL++    L
Sbjct: 237 SLNHLDLVYNNLTGPIPSSLGNLKNLQYLFLYQNKLSGPIPPSIFSLQKLISLDLSDNSL 296

Query: 409 TDAGVKHIKDLSSLTLLNLSQNCNLTDKTLELISGLTGLVSLNVSNSRIT 458
           +    + +  L +L +L+L  N N T K    ++ L  L  L + +++ +
Sbjct: 297 SGEIPELVIQLQNLEILHLFSN-NFTGKIPVALTSLPRLQVLQLWSNKFS 345

Length = 968

>gnl|CDD|215061 PLN00113, PLN00113, leucine-rich repeat receptor-like protein kinase; Provisional

 Score = 48.3 bits (115), Expect = 8e-06
 Identities = 80/355 (22%), Positives = 146/355 (41%), Gaps = 33/355 (9%)

Query: 105 LSNLTSLS--FRRNNAITAQGMKAFAGLINLVKLDLERCTRIHGGLVNLKGLMKLESLNI 162
           L NL +L   F   N ++     +   L  L+ LDL     + G +  L  +++L++L I
Sbjct: 256 LGNLKNLQYLFLYQNKLSGPIPPSIFSLQKLISLDLSD-NSLSGEIPEL--VIQLQNLEI 312

Query: 163 K--WCNCITDSDMKPLSGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAAC 220
              + N  T      L+ L  L+ LQ+  +K +      L     LT+L+L    +T   
Sbjct: 313 LHLFSNNFTGKIPVALTSLPRLQVLQLWSNKFSGEIPKNLGKHNNLTVLDLSTNNLTGEI 372

Query: 221 LDSLSALGSLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLES 280
            + L + G+LF L L    L  +  +      SL+ + L  N  + E       L  +  
Sbjct: 373 PEGLCSSGNLFKLILFSNSLEGEIPKSLGACRSLRRVRLQDNSFSGELPSEFTKLPLVYF 432

Query: 281 LNLDSCGIGDEGLVNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISDGS 340
           L++ +         NL G  N +  ++                 +L+ ++L+      G 
Sbjct: 433 LDISNN--------NLQGRINSRKWDM----------------PSLQMLSLARNKFF-GG 467

Query: 341 LRKLAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLFGARITDSGAAYLRNFKNLRS 400
           L    G   L++L+L   Q +      L SL+ L  L L   +++      L + K L S
Sbjct: 468 LPDSFGSKRLENLDLSRNQFSGAVPRKLGSLSELMQLKLSENKLSGEIPDELSSCKKLVS 527

Query: 401 LEICGGGLTDAGVKHIKDLSSLTLLNLSQNCNLTDKTLELISGLTGLVSLNVSNS 455
           L++    L+        ++  L+ L+LSQN  L+ +  + +  +  LV +N+S++
Sbjct: 528 LDLSHNQLSGQIPASFSEMPVLSQLDLSQN-QLSGEIPKNLGNVESLVQVNISHN 581

Length = 968

>gnl|CDD|187754 cd09293, AMN1, Antagonist of mitotic exit network protein 1

 Score = 46.6 bits (111), Expect = 9e-06
 Identities = 55/214 (25%), Positives = 88/214 (41%), Gaps = 40/214 (18%)

Query: 190 SKVTDSGIAYLKGL--QKLTLLNLEGCPVTAACLDSLSALGSLFYLNLNRCQLSDDGCEK 247
            ++T S I+ L  +    L  L L  CP++   LD LS    L  L L   +L       
Sbjct: 12  GQITQSNISQLLRILHSGLEWLELYMCPISDPPLDQLSNCNKLKKLILPGSKL------- 64

Query: 248 FSKIGSLKVLNLGFNEITDECLVHL-KGLTNLESLNLDSC-GIGDEGLVNLTGLC-NLKC 304
                           I DE L+ L +   NL+ L+L +C  I D G+V L   C  L+ 
Sbjct: 65  ----------------IDDEGLIALAQSCPNLQVLDLRACENITDSGIVALATNCPKLQT 108

Query: 305 LELSDTQVGSS----GLRHLSGL-TNLESINLSFTGISDGSLRKLAGLSS--LKSLNLD- 356
           + L   + G       L  L    T L+++  +   ++D  + +LA   S  L+ L+L+ 
Sbjct: 109 INLGRHRNGHLITDVSLSALGKNCTFLQTVGFAGCDVTDKGVWELASGCSKSLERLSLNN 168

Query: 357 ARQITDTGLAALTSLTGLTHLDLF----GARITD 386
            R +TD  + A+ +     +L +        ITD
Sbjct: 169 CRNLTDQSIPAILASNYFPNLSVLEFRGCPLITD 202

Amn1 has been functionally characterized in Saccharomyces cerevisiae as a component of the Antagonist of MEN pathway (AMEN). The AMEN network is activated by MEN (mitotic exit network) via an active Cdc14, and in turn switches off MEN. Amn1 constitutes one of the alternative mechanisms by which MEN may be disrupted. Specifically, Amn1 binds Tem1 (Termination of M-phase, a GTPase that belongs to the RAS superfamily), and disrupts its association with Cdc15, the primary downstream target. Amn1 is a leucine-rich repeat (LRR) protein, with 12 repeats in the S. cerevisiae ortholog. As a negative regulator of the signal transduction pathway MEN, overexpression of AMN1 slows the growth of wild type cells. The function of the vertebrate members of this family has not been determined experimentally, they have fewer LRRs that determine the extent of this model. Length = 226

>gnl|CDD|238064 cd00116, LRR_RI, Leucine-rich repeats (LRRs), ribonuclease inhibitor (RI)-like subfamily

 Score = 44.3 bits (105), Expect = 7e-05
 Identities = 57/219 (26%), Positives = 87/219 (39%), Gaps = 43/219 (19%)

Query: 99  LEHLRGLSNLTSLSFRRNNAITAQGMKAFAGL---INLVKLDLERCTRIHGGLVNL-KGL 154
           L+ L     L  L    +NA+   G      L    +L +L L        GL  L KGL
Sbjct: 74  LQGLTKGCGLQELD-LSDNALGPDGCGVLESLLRSSSLQELKLNNNGLGDRGLRLLAKGL 132

Query: 155 ----MKLESLNIKWCNCITDSDMKPLSGL----TNLKSLQISCSKVTDSGIAYLKGLQKL 206
                 LE L +   N +  +  + L+       +LK L ++ + + D+GI  L      
Sbjct: 133 KDLPPALEKL-VLGRNRLEGASCEALAKALRANRDLKELNLANNGIGDAGIRALA----- 186

Query: 207 TLLNLEGCPVTAACLDSLSALGSLFYLNLNRCQLSDDG----CEKFSKIGSLKVLNLGFN 262
                          + L A  +L  L+LN   L+D+G     E  + + SL+VLNLG N
Sbjct: 187 ---------------EGLKANCNLEVLDLNNNGLTDEGASALAETLASLKSLEVLNLGDN 231

Query: 263 EITDECLVHL-----KGLTNLESLNLDSCGIGDEGLVNL 296
            +TD     L         +L +L+L    I D+G  +L
Sbjct: 232 NLTDAGAAALASALLSPNISLLTLSLSCNDITDDGAKDL 270

LRRs are 20-29 residue sequence motifs present in many proteins that participate in protein-protein interactions and have different functions and cellular locations. LRRs correspond to structural units consisting of a beta strand (LxxLxLxxN/CxL conserved pattern) and an alpha helix. This alignment contains 12 strands corresponding to 11 full repeats, consistent with the extent observed in the subfamily acting as Ran GTPase Activating Proteins (RanGAP1). Length = 319

>gnl|CDD|187754 cd09293, AMN1, Antagonist of mitotic exit network protein 1

 Score = 40.8 bits (96), Expect = 6e-04
 Identities = 43/160 (26%), Positives = 72/160 (45%), Gaps = 25/160 (15%)

Query: 168 ITDSDMKPLSGL--TNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCP-VTAACLDSL 224
           IT S++  L  +  + L+ L++    ++D  +  L    KL  L L G   +    L +L
Sbjct: 14  ITQSNISQLLRILHSGLEWLELYMCPISDPPLDQLSNCNKLKKLILPGSKLIDDEGLIAL 73

Query: 225 -SALGSLFYLNLNRC-QLSDDG-------CEKFSKIGSLKVLNLGFNE----ITDECLVH 271
             +  +L  L+L  C  ++D G       C K      L+ +NLG +     ITD  L  
Sbjct: 74  AQSCPNLQVLDLRACENITDSGIVALATNCPK------LQTINLGRHRNGHLITDVSLSA 127

Query: 272 L-KGLTNLESLNLDSCGIGDEGLVNLTGLC--NLKCLELS 308
           L K  T L+++    C + D+G+  L   C  +L+ L L+
Sbjct: 128 LGKNCTFLQTVGFAGCDVTDKGVWELASGCSKSLERLSLN 167

Amn1 has been functionally characterized in Saccharomyces cerevisiae as a component of the Antagonist of MEN pathway (AMEN). The AMEN network is activated by MEN (mitotic exit network) via an active Cdc14, and in turn switches off MEN. Amn1 constitutes one of the alternative mechanisms by which MEN may be disrupted. Specifically, Amn1 binds Tem1 (Termination of M-phase, a GTPase that belongs to the RAS superfamily), and disrupts its association with Cdc15, the primary downstream target. Amn1 is a leucine-rich repeat (LRR) protein, with 12 repeats in the S. cerevisiae ortholog. As a negative regulator of the signal transduction pathway MEN, overexpression of AMN1 slows the growth of wild type cells. The function of the vertebrate members of this family has not been determined experimentally, they have fewer LRRs that determine the extent of this model. Length = 226

>gnl|CDD|238064 cd00116, LRR_RI, Leucine-rich repeats (LRRs), ribonuclease inhibitor (RI)-like subfamily

 Score = 40.0 bits (94), Expect = 0.001
 Identities = 62/225 (27%), Positives = 94/225 (41%), Gaps = 31/225 (13%)

Query: 271 HLKGLTNLESLNLDSCGIGDEGLV----NLTGLCNLKCLELSDTQVGS---------SGL 317
            L  L  L+ L L+   +G+E        L    +LK L LS  + G           GL
Sbjct: 18  LLPKLLCLQVLRLEGNTLGEEAAKALASALRPQPSLKELCLSLNETGRIPRGLQSLLQGL 77

Query: 318 RHLSGLTNLESINLSFTGISDGSLRKLAGLSSLKSLNLDARQITDTGLA----ALTSLT- 372
               GL  L+  + +      G L  L   SSL+ L L+   + D GL      L  L  
Sbjct: 78  TKGCGLQELDLSDNALGPDGCGVLESLLRSSSLQELKLNNNGLGDRGLRLLAKGLKDLPP 137

Query: 373 GLTHLDLFGARITDSG----AAYLRNFKNLRSLEICGGGLTDAGVKHI----KDLSSLTL 424
            L  L L   R+  +     A  LR  ++L+ L +   G+ DAG++ +    K   +L +
Sbjct: 138 ALEKLVLGRNRLEGASCEALAKALRANRDLKELNLANNGIGDAGIRALAEGLKANCNLEV 197

Query: 425 LNLSQNCNLTDKTL----ELISGLTGLVSLNVSNSRITSAGLRHL 465
           L+L  N  LTD+      E ++ L  L  LN+ ++ +T AG   L
Sbjct: 198 LDL-NNNGLTDEGASALAETLASLKSLEVLNLGDNNLTDAGAAAL 241

LRRs are 20-29 residue sequence motifs present in many proteins that participate in protein-protein interactions and have different functions and cellular locations. LRRs correspond to structural units consisting of a beta strand (LxxLxLxxN/CxL conserved pattern) and an alpha helix. This alignment contains 12 strands corresponding to 11 full repeats, consistent with the extent observed in the subfamily acting as Ran GTPase Activating Proteins (RanGAP1). Length = 319

>gnl|CDD|187754 cd09293, AMN1, Antagonist of mitotic exit network protein 1

 Score = 40.0 bits (94), Expect = 0.001
 Identities = 22/83 (26%), Positives = 37/83 (44%), Gaps = 5/83 (6%)

Query: 43  GVNDKWMDVIASQGSSLLSVDLSGSDVTDSGLIHL--KDCSNLQSLDFNFCIQISDGGLE 100
            + D  +  +    + L +V  +G DVTD G+  L      +L+ L  N C  ++D  + 
Sbjct: 119 LITDVSLSALGKNCTFLQTVGFAGCDVTDKGVWELASGCSKSLERLSLNNCRNLTDQSIP 178

Query: 101 HLRGLS---NLTSLSFRRNNAIT 120
            +   +   NL+ L FR    IT
Sbjct: 179 AILASNYFPNLSVLEFRGCPLIT 201

Amn1 has been functionally characterized in Saccharomyces cerevisiae as a component of the Antagonist of MEN pathway (AMEN). The AMEN network is activated by MEN (mitotic exit network) via an active Cdc14, and in turn switches off MEN. Amn1 constitutes one of the alternative mechanisms by which MEN may be disrupted. Specifically, Amn1 binds Tem1 (Termination of M-phase, a GTPase that belongs to the RAS superfamily), and disrupts its association with Cdc15, the primary downstream target. Amn1 is a leucine-rich repeat (LRR) protein, with 12 repeats in the S. cerevisiae ortholog. As a negative regulator of the signal transduction pathway MEN, overexpression of AMN1 slows the growth of wild type cells. The function of the vertebrate members of this family has not been determined experimentally, they have fewer LRRs that determine the extent of this model. Length = 226

>gnl|CDD|206026 pfam13855, LRR_8, Leucine rich repeat

 Score = 35.6 bits (83), Expect = 0.003
 Identities = 24/61 (39%), Positives = 35/61 (57%), Gaps = 1/61 (1%)

Query: 397 NLRSLEICGGGLTDAGVKHIKDLSSLTLLNLSQNCNLTDKTLELISGLTGLVSLNVSNSR 456
           NL+SL++    LT       K L +L +L+LS N NLT  + E  SGL  L SL++S + 
Sbjct: 1   NLKSLDLSNNRLTVIPDGAFKGLPNLKVLDLSGN-NLTSISPEAFSGLPSLRSLDLSGNN 59

Query: 457 I 457
           +
Sbjct: 60  L 60

Length = 60

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	469
PLN00113	968	leucine-rich repeat receptor-like protein kinase;	100.0
PLN00113	968	leucine-rich repeat receptor-like protein kinase;	100.0
KOG4194	873	consensus Membrane glycoprotein LIG-1 [Signal tran	100.0
KOG4194	873	consensus Membrane glycoprotein LIG-1 [Signal tran	100.0
KOG0444	1255	consensus Cytoskeletal regulator Flightless-I (con	99.95
KOG0444	1255	consensus Cytoskeletal regulator Flightless-I (con	99.94
KOG0618	1081	consensus Serine/threonine phosphatase 2C containi	99.92
KOG0472	565	consensus Leucine-rich repeat protein [Function un	99.91
KOG0618	1081	consensus Serine/threonine phosphatase 2C containi	99.9
PLN03210	1153	Resistant to P. syringae 6; Provisional	99.89
KOG0472	565	consensus Leucine-rich repeat protein [Function un	99.89
PLN03210	1153	Resistant to P. syringae 6; Provisional	99.88
cd00116	319	LRR_RI Leucine-rich repeats (LRRs), ribonuclease i	99.84
cd00116	319	LRR_RI Leucine-rich repeats (LRRs), ribonuclease i	99.84
KOG4237	498	consensus Extracellular matrix protein slit, conta	99.8
KOG4237	498	consensus Extracellular matrix protein slit, conta	99.79
PRK15387	788	E3 ubiquitin-protein ligase SspH2; Provisional	99.67
PRK15387	788	E3 ubiquitin-protein ligase SspH2; Provisional	99.66
PRK15370	754	E3 ubiquitin-protein ligase SlrP; Provisional	99.58
KOG1909	382	consensus Ran GTPase-activating protein [RNA proce	99.56
KOG1909	382	consensus Ran GTPase-activating protein [RNA proce	99.55
PRK15370	754	E3 ubiquitin-protein ligase SlrP; Provisional	99.5
KOG4658	889	consensus Apoptotic ATPase [Signal transduction me	99.49
KOG4341	483	consensus F-box protein containing LRR [General fu	99.46
KOG4341	483	consensus F-box protein containing LRR [General fu	99.38
KOG0617	264	consensus Ras suppressor protein (contains leucine	99.3
KOG2120	419	consensus SCF ubiquitin ligase, Skp2 component [Po	99.29
KOG3207	505	consensus Beta-tubulin folding cofactor E [Posttra	99.27
KOG0617	264	consensus Ras suppressor protein (contains leucine	99.26
KOG4658	889	consensus Apoptotic ATPase [Signal transduction me	99.19
KOG3207	505	consensus Beta-tubulin folding cofactor E [Posttra	99.15
PF14580	175	LRR_9: Leucine-rich repeat; PDB: 2JE1_D 2JE0_A 2JQ	99.12
KOG2120	419	consensus SCF ubiquitin ligase, Skp2 component [Po	99.1
KOG1259	490	consensus Nischarin, modulator of integrin alpha5	98.92
COG5238	388	RNA1 Ran GTPase-activating protein (RanGAP) involv	98.9
PF14580	175	LRR_9: Leucine-rich repeat; PDB: 2JE1_D 2JE0_A 2JQ	98.88
KOG1259	490	consensus Nischarin, modulator of integrin alpha5	98.81
KOG3665	699	consensus ZYG-1-like serine/threonine protein kina	98.75
COG5238	388	RNA1 Ran GTPase-activating protein (RanGAP) involv	98.72
PLN03150	623	hypothetical protein; Provisional	98.71
PF13855	61	LRR_8: Leucine rich repeat; PDB: 2O6S_A 3A79_B 3RF	98.67
PLN03150	623	hypothetical protein; Provisional	98.67
PF13855	61	LRR_8: Leucine rich repeat; PDB: 2O6S_A 3A79_B 3RF	98.64
COG4886	394	Leucine-rich repeat (LRR) protein [Function unknow	98.58
KOG1859	1096	consensus Leucine-rich repeat proteins [General fu	98.57
COG4886	394	Leucine-rich repeat (LRR) protein [Function unknow	98.54
KOG3665	699	consensus ZYG-1-like serine/threonine protein kina	98.5
KOG0532	722	consensus Leucine-rich repeat (LRR) protein, conta	98.47
KOG2982	418	consensus Uncharacterized conserved protein [Funct	98.43
KOG2982	418	consensus Uncharacterized conserved protein [Funct	98.42
KOG1947	482	consensus Leucine rich repeat proteins, some prote	98.38
KOG0531	414	consensus Protein phosphatase 1, regulatory subuni	98.34
KOG0531	414	consensus Protein phosphatase 1, regulatory subuni	98.33
KOG0532	722	consensus Leucine-rich repeat (LRR) protein, conta	98.31
KOG1859	1096	consensus Leucine-rich repeat proteins [General fu	98.2
KOG1947	482	consensus Leucine rich repeat proteins, some prote	97.99
KOG4579	177	consensus Leucine-rich repeat (LRR) protein associ	97.95
KOG2123	388	consensus Uncharacterized conserved protein [Funct	97.83
KOG4579	177	consensus Leucine-rich repeat (LRR) protein associ	97.79
PF12799	44	LRR_4: Leucine Rich repeats (2 copies); PDB: 2OMT_	97.57
KOG3864	221	consensus Uncharacterized conserved protein [Funct	97.55
KOG1644	233	consensus U2-associated snRNP A' protein [RNA proc	97.52
PF12799	44	LRR_4: Leucine Rich repeats (2 copies); PDB: 2OMT_	97.51
PRK15386	426	type III secretion protein GogB; Provisional	97.44
PF13306	129	LRR_5: Leucine rich repeats (6 copies); PDB: 3ZYJ_	97.4
KOG1644	233	consensus U2-associated snRNP A' protein [RNA proc	97.35
KOG2739	260	consensus Leucine-rich acidic nuclear protein [Cel	97.23
KOG3864	221	consensus Uncharacterized conserved protein [Funct	97.22
PF13306	129	LRR_5: Leucine rich repeats (6 copies); PDB: 3ZYJ_	97.18
KOG2123	388	consensus Uncharacterized conserved protein [Funct	97.15
PRK15386	426	type III secretion protein GogB; Provisional	97.05
KOG4308	478	consensus LRR-containing protein [Function unknown	96.95
KOG4308	478	consensus LRR-containing protein [Function unknown	96.94
PF13516	24	LRR_6: Leucine Rich repeat; PDB: 3RGZ_A 3RJ0_A 3RI	96.65
KOG2739	260	consensus Leucine-rich acidic nuclear protein [Cel	96.62
smart00368	28	LRR_RI Leucine rich repeat, ribonuclease inhibitor	96.03
smart00367	26	LRR_CC Leucine-rich repeat - CC (cysteine-containi	95.95
smart00367	26	LRR_CC Leucine-rich repeat - CC (cysteine-containi	94.36
PF13516	24	LRR_6: Leucine Rich repeat; PDB: 3RGZ_A 3RJ0_A 3RI	92.74
PF00560	22	LRR_1: Leucine Rich Repeat; InterPro: IPR001611 Le	91.92
PF13504	17	LRR_7: Leucine rich repeat; PDB: 3OJA_B 3G06_A 1OO	91.65
smart00370	26	LRR Leucine-rich repeats, outliers.	82.42
smart00369	26	LRR_TYP Leucine-rich repeats, typical (most popula	82.42

>PLN00113 leucine-rich repeat receptor-like protein kinase; Provisional

Probab=100.00  E-value=4.5e-41  Score=352.25  Aligned_cols=400  Identities=21%  Similarity=0.219  Sum_probs=228.3

Q ss_pred             cCCCccEEEecCCCCChHhhHhhhcCCCCCEEecCCCcccChhHhHhhhCCCCCCEEeCCCCCcCcHHHHHHHhCCCCCC
Q 012186           55 QGSSLLSVDLSGSDVTDSGLIHLKDCSNLQSLDFNFCIQISDGGLEHLRGLSNLTSLSFRRNNAITAQGMKAFAGLINLV  134 (469)
Q Consensus        55 ~~~~l~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~l~~L~  134 (469)
                      ..+++++|++++|.+++..|..+..+++|++|++++| .+....+..+.++++|++|++++|.. ....|..++++++|+
T Consensus       138 ~l~~L~~L~Ls~n~~~~~~p~~~~~l~~L~~L~L~~n-~l~~~~p~~~~~l~~L~~L~L~~n~l-~~~~p~~l~~l~~L~  215 (968)
T PLN00113        138 SIPNLETLDLSNNMLSGEIPNDIGSFSSLKVLDLGGN-VLVGKIPNSLTNLTSLEFLTLASNQL-VGQIPRELGQMKSLK  215 (968)
T ss_pred             ccCCCCEEECcCCcccccCChHHhcCCCCCEEECccC-cccccCChhhhhCcCCCeeeccCCCC-cCcCChHHcCcCCcc
Confidence            3567888888888777777777788888888888774 45555666777777888888877763 344566777777777


Q ss_pred             EEecccccccccccccccCCCCccEEEccCCCCCChhhhhcccCCCCCCEEEecccccChhhhhhccCCCCCCeeeccCC
Q 012186          135 KLDLERCTRIHGGLVNLKGLMKLESLNIKWCNCITDSDMKPLSGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGC  214 (469)
Q Consensus       135 ~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~  214 (469)
                      +|++++|......+..+.++++|++|++.+|. +....+..+..+++|+.|++++|.+.+..+..+..+++|++|++++|
T Consensus       216 ~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~-l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~n  294 (968)
T PLN00113        216 WIYLGYNNLSGEIPYEIGGLTSLNHLDLVYNN-LTGPIPSSLGNLKNLQYLFLYQNKLSGPIPPSIFSLQKLISLDLSDN  294 (968)
T ss_pred             EEECcCCccCCcCChhHhcCCCCCEEECcCce-eccccChhHhCCCCCCEEECcCCeeeccCchhHhhccCcCEEECcCC
Confidence            77777765444555666777777777777643 33344555666666666666666655544455555566666666665


Q ss_pred             CCchhhHHhhhcCCCCcEEECCCCCCChhHHHHhhcCCCccEEEccCCCCchHHHHHhhCCCCCCEEecCCCCCC-----
Q 012186          215 PVTAACLDSLSALGSLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNLDSCGIG-----  289 (469)
Q Consensus       215 ~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~-----  289 (469)
                      .+....+..+..+++|+.|++.+|.+....+..+..+++|+.|++++|.+.+..+..+..+++|+.|++++|.+.     
T Consensus       295 ~l~~~~p~~~~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~p~~l~~~~~L~~L~Ls~n~l~~~~p~  374 (968)
T PLN00113        295 SLSGEIPELVIQLQNLEILHLFSNNFTGKIPVALTSLPRLQVLQLWSNKFSGEIPKNLGKHNNLTVLDLSTNNLTGEIPE  374 (968)
T ss_pred             eeccCCChhHcCCCCCcEEECCCCccCCcCChhHhcCCCCCEEECcCCCCcCcCChHHhCCCCCcEEECCCCeeEeeCCh
Confidence            555444555555555555555555554444444555555555555555544444444444444555544444333     


Q ss_pred             -------------------hHHHHHhhCCCCCCEEeccCCCCChhhHHHhhCCCCCcEEecccCCCCchHHHhhhCCCC-
Q 012186          290 -------------------DEGLVNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISDGSLRKLAGLSS-  349 (469)
Q Consensus       290 -------------------~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~-  349 (469)
                                         ...+..+..+++|+.|++.+|.+....+..+..+++|+.|++++|.+....+..+..+++ 
T Consensus       375 ~~~~~~~L~~L~l~~n~l~~~~p~~~~~~~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L  454 (968)
T PLN00113        375 GLCSSGNLFKLILFSNSLEGEIPKSLGACRSLRRVRLQDNSFSGELPSEFTKLPLVYFLDISNNNLQGRINSRKWDMPSL  454 (968)
T ss_pred             hHhCcCCCCEEECcCCEecccCCHHHhCCCCCCEEECcCCEeeeECChhHhcCCCCCEEECcCCcccCccChhhccCCCC
Confidence                               233333444455555555555444444444444555555555554444333333333333 


Q ss_pred             ----------------------CcEEEccCCCCCHHHHHHHhcCCCCCEeecCCCCCChhHHHHhHcCCCCCeeeeCCCC
Q 012186          350 ----------------------LKSLNLDARQITDTGLAALTSLTGLTHLDLFGARITDSGAAYLRNFKNLRSLEICGGG  407 (469)
Q Consensus       350 ----------------------L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~  407 (469)
                                            |+.|++++|.++...+..+..+++|+.|++++|.+.+..|..+..+++|+.|++++|.
T Consensus       455 ~~L~L~~n~~~~~~p~~~~~~~L~~L~ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~  534 (968)
T PLN00113        455 QMLSLARNKFFGGLPDSFGSKRLENLDLSRNQFSGAVPRKLGSLSELMQLKLSENKLSGEIPDELSSCKKLVSLDLSHNQ  534 (968)
T ss_pred             cEEECcCceeeeecCcccccccceEEECcCCccCCccChhhhhhhccCEEECcCCcceeeCChHHcCccCCCEEECCCCc
Confidence                                  4444444444444434444455555555555555555555555555555555555555


Q ss_pred             CCHHHHHHHhcCCCCCeeeccCCCCCChhHHHHHHhCcccccccccCCCCC
Q 012186          408 LTDAGVKHIKDLSSLTLLNLSQNCNLTDKTLELISGLTGLVSLNVSNSRIT  458 (469)
Q Consensus       408 ~~~~~~~~l~~~~~L~~L~l~~~~~l~~~~~~~l~~l~~L~~L~l~~~~~~  458 (469)
                      +++..|..+..+++|+.|++++| .+.+..|..+.++++|+.|++++|++.
T Consensus       535 l~~~~p~~~~~l~~L~~L~Ls~N-~l~~~~p~~l~~l~~L~~l~ls~N~l~  584 (968)
T PLN00113        535 LSGQIPASFSEMPVLSQLDLSQN-QLSGEIPKNLGNVESLVQVNISHNHLH  584 (968)
T ss_pred             ccccCChhHhCcccCCEEECCCC-cccccCChhHhcCcccCEEeccCCcce
Confidence            55555555555555666666655 455555555555555666666555543

>PLN00113 leucine-rich repeat receptor-like protein kinase; Provisional

Probab=100.00  E-value=4.7e-41  Score=352.13  Aligned_cols=407  Identities=19%  Similarity=0.186  Sum_probs=225.2

Q ss_pred             CHHHHHHHHhcCCCccEEEecCCCCChHhhHhhhcCCCCCEEecCCCcccChhHhHhh-hCCCCCCEEeCCCCCcCcHHH
Q 012186           45 NDKWMDVIASQGSSLLSVDLSGSDVTDSGLIHLKDCSNLQSLDFNFCIQISDGGLEHL-RGLSNLTSLSFRRNNAITAQG  123 (469)
Q Consensus        45 ~~~~~~~~~~~~~~l~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~l-~~~~~L~~L~l~~~~~~~~~~  123 (469)
                      ++.|..+.+....+++.|+++++.+++..+..+..+++|++|++++| .+....+..+ ..+++|++|++++|.+. ...
T Consensus        57 ~c~w~gv~c~~~~~v~~L~L~~~~i~~~~~~~~~~l~~L~~L~Ls~n-~~~~~ip~~~~~~l~~L~~L~Ls~n~l~-~~~  134 (968)
T PLN00113         57 VCLWQGITCNNSSRVVSIDLSGKNISGKISSAIFRLPYIQTINLSNN-QLSGPIPDDIFTTSSSLRYLNLSNNNFT-GSI  134 (968)
T ss_pred             CCcCcceecCCCCcEEEEEecCCCccccCChHHhCCCCCCEEECCCC-ccCCcCChHHhccCCCCCEEECcCCccc-ccc
Confidence            45666666655567888888888887777777888888888888874 4544444443 37777777777776542 222


Q ss_pred             HHHHhCCCCCCEEecccccccccccccccCCCCccEEEccCCCCCChhhhhcccCCCCCCEEEecccccChhhhhhccCC
Q 012186          124 MKAFAGLINLVKLDLERCTRIHGGLVNLKGLMKLESLNIKWCNCITDSDMKPLSGLTNLKSLQISCSKVTDSGIAYLKGL  203 (469)
Q Consensus       124 ~~~~~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~l  203 (469)
                      |  .+.+++|++|++++|......+..+.++++|++|++++|. +....+..+.++++|++|++++|.+....+..+..+
T Consensus       135 p--~~~l~~L~~L~Ls~n~~~~~~p~~~~~l~~L~~L~L~~n~-l~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~l~~l  211 (968)
T PLN00113        135 P--RGSIPNLETLDLSNNMLSGEIPNDIGSFSSLKVLDLGGNV-LVGKIPNSLTNLTSLEFLTLASNQLVGQIPRELGQM  211 (968)
T ss_pred             C--ccccCCCCEEECcCCcccccCChHHhcCCCCCEEECccCc-ccccCChhhhhCcCCCeeeccCCCCcCcCChHHcCc
Confidence            2  1345566666666654333344455566666666665533 222344455555666666666555554445555555


Q ss_pred             CCCCeeeccCCCCchhhHHhhhcCCCCcEEECCCCCCChhHHHHhhcCCCccEEEccCCCCchHHHHHhhCCCCCCEEec
Q 012186          204 QKLTLLNLEGCPVTAACLDSLSALGSLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNL  283 (469)
Q Consensus       204 ~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l  283 (469)
                      ++|+.|++++|.+....+..+..+++|++|++.+|.+....+..+..+++|+.|++++|.+.+..+..+..+++|+.|++
T Consensus       212 ~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L  291 (968)
T PLN00113        212 KSLKWIYLGYNNLSGEIPYEIGGLTSLNHLDLVYNNLTGPIPSSLGNLKNLQYLFLYQNKLSGPIPPSIFSLQKLISLDL  291 (968)
T ss_pred             CCccEEECcCCccCCcCChhHhcCCCCCEEECcCceeccccChhHhCCCCCCEEECcCCeeeccCchhHhhccCcCEEEC
Confidence            56666666555555444555555555666666555555444555555555555555555555444445555555555555


Q ss_pred             CCCCCChHHHHHhhCCCCCCEEeccCCCCChhhHHHhhCCCCCcEEecccCCCCchHHHhhhCCCCCcEEEccCCCCCH-
Q 012186          284 DSCGIGDEGLVNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISDGSLRKLAGLSSLKSLNLDARQITD-  362 (469)
Q Consensus       284 ~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~-  362 (469)
                      ++|.+....+..+..+++|+.|++.+|.+....+..+..+++|+.|++++|.+....+..+..+++|+.|++++|.++. 
T Consensus       292 s~n~l~~~~p~~~~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~p~~l~~~~~L~~L~Ls~n~l~~~  371 (968)
T PLN00113        292 SDNSLSGEIPELVIQLQNLEILHLFSNNFTGKIPVALTSLPRLQVLQLWSNKFSGEIPKNLGKHNNLTVLDLSTNNLTGE  371 (968)
T ss_pred             cCCeeccCCChhHcCCCCCcEEECCCCccCCcCChhHhcCCCCCEEECcCCCCcCcCChHHhCCCCCcEEECCCCeeEee
Confidence            5555444444444555555555555555544444445555555555555555544444444555555555555554443 


Q ss_pred             -----------------------HHHHHHhcCCCCCEeecCCCCCChhHHHHhHcCCCCCeeeeCCCCCCHHHHHHHhcC
Q 012186          363 -----------------------TGLAALTSLTGLTHLDLFGARITDSGAAYLRNFKNLRSLEICGGGLTDAGVKHIKDL  419 (469)
Q Consensus       363 -----------------------~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~  419 (469)
                                             ..+..+..+++|+.|++++|.+++..|..+..++.|+.|++++|.+++..+..+..+
T Consensus       372 ~p~~~~~~~~L~~L~l~~n~l~~~~p~~~~~~~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l  451 (968)
T PLN00113        372 IPEGLCSSGNLFKLILFSNSLEGEIPKSLGACRSLRRVRLQDNSFSGELPSEFTKLPLVYFLDISNNNLQGRINSRKWDM  451 (968)
T ss_pred             CChhHhCcCCCCEEECcCCEecccCCHHHhCCCCCCEEECcCCEeeeECChhHhcCCCCCEEECcCCcccCccChhhccC
Confidence                                   334444445555555555555554444555555555555555555555444444455


Q ss_pred             CCCCeeeccCCCCCChhHHHHHHhCcccccccccCCCCC
Q 012186          420 SSLTLLNLSQNCNLTDKTLELISGLTGLVSLNVSNSRIT  458 (469)
Q Consensus       420 ~~L~~L~l~~~~~l~~~~~~~l~~l~~L~~L~l~~~~~~  458 (469)
                      ++|+.|++++| .+.+..|..+ ..++|+.|++++|+++
T Consensus       452 ~~L~~L~L~~n-~~~~~~p~~~-~~~~L~~L~ls~n~l~  488 (968)
T PLN00113        452 PSLQMLSLARN-KFFGGLPDSF-GSKRLENLDLSRNQFS  488 (968)
T ss_pred             CCCcEEECcCc-eeeeecCccc-ccccceEEECcCCccC
Confidence            55555555555 3333333322 2355666666666655

>KOG4194 consensus Membrane glycoprotein LIG-1 [Signal transduction mechanisms]

Probab=100.00  E-value=7.8e-37  Score=274.78  Aligned_cols=391  Identities=24%  Similarity=0.250  Sum_probs=272.2

Q ss_pred             CccEEEecCCCCChHhhHhhhcC--CCCCEEecCCCcccChhHhHhhhCCCCCCEEeCCCCCcCcHHHHHHHhCCCCCCE
Q 012186           58 SLLSVDLSGSDVTDSGLIHLKDC--SNLQSLDFNFCIQISDGGLEHLRGLSNLTSLSFRRNNAITAQGMKAFAGLINLVK  135 (469)
Q Consensus        58 ~l~~L~l~~~~~~~~~~~~~~~~--~~L~~L~l~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~  135 (469)
                      ..+.|+.++..+.......+..+  +.-+.|++++ +.+....+..|.++++|+.+++..|..  ..+|.......+|+.
T Consensus        53 ~~~lldcs~~~lea~~~~~l~g~lp~~t~~Ldlsn-Nkl~~id~~~f~nl~nLq~v~l~~N~L--t~IP~f~~~sghl~~  129 (873)
T KOG4194|consen   53 NTRLLDCSDRELEAIDKSRLKGFLPSQTQTLDLSN-NKLSHIDFEFFYNLPNLQEVNLNKNEL--TRIPRFGHESGHLEK  129 (873)
T ss_pred             CceeeecCccccccccccccCCcCccceeeeeccc-cccccCcHHHHhcCCcceeeeeccchh--hhcccccccccceeE
Confidence            44556666665543222222221  3455677777 467777777777777777777777754  445555555556777


Q ss_pred             EecccccccccccccccCCCCccEEEccCCCCCChhhhhcccCCCCCCEEEecccccChhhhhhccCCCCCCeeeccCCC
Q 012186          136 LDLERCTRIHGGLVNLKGLMKLESLNIKWCNCITDSDMKPLSGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCP  215 (469)
Q Consensus       136 L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~  215 (469)
                      |++.+|-.......+++.++.||.|+++. +.+.......+..-.++++|++++|.++......|.++.+|.+|.++.|.
T Consensus       130 L~L~~N~I~sv~se~L~~l~alrslDLSr-N~is~i~~~sfp~~~ni~~L~La~N~It~l~~~~F~~lnsL~tlkLsrNr  208 (873)
T KOG4194|consen  130 LDLRHNLISSVTSEELSALPALRSLDLSR-NLISEIPKPSFPAKVNIKKLNLASNRITTLETGHFDSLNSLLTLKLSRNR  208 (873)
T ss_pred             EeeeccccccccHHHHHhHhhhhhhhhhh-chhhcccCCCCCCCCCceEEeeccccccccccccccccchheeeecccCc
Confidence            77777654445556677777777777776 44555555566666777777777777777777777777777777777777


Q ss_pred             CchhhHHhhhcCCCCcEEECCCCCCChhHHHHhhcCCCccEEEccCCCCchHHHHHhhCCCCCCEEecCCCCCChHHHHH
Q 012186          216 VTAACLDSLSALGSLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNLDSCGIGDEGLVN  295 (469)
Q Consensus       216 ~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~  295 (469)
                      ++...+..|.++++|+.|++..|.+...-...|..+++|+.|.+..|.+.......|..+.++++|++..|++.......
T Consensus       209 ittLp~r~Fk~L~~L~~LdLnrN~irive~ltFqgL~Sl~nlklqrN~I~kL~DG~Fy~l~kme~l~L~~N~l~~vn~g~  288 (873)
T KOG4194|consen  209 ITTLPQRSFKRLPKLESLDLNRNRIRIVEGLTFQGLPSLQNLKLQRNDISKLDDGAFYGLEKMEHLNLETNRLQAVNEGW  288 (873)
T ss_pred             ccccCHHHhhhcchhhhhhccccceeeehhhhhcCchhhhhhhhhhcCcccccCcceeeecccceeecccchhhhhhccc
Confidence            77777777777777777777777766544456677777777777777776555556667777777777777766554445


Q ss_pred             hhCCCCCCEEeccCCCCChhhHHHhhCCCCCcEEecccCCCCchHHHhhhCCCCCcEEEccCCCCCHHHHHHHhcCCCCC
Q 012186          296 LTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISDGSLRKLAGLSSLKSLNLDARQITDTGLAALTSLTGLT  375 (469)
Q Consensus       296 ~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~  375 (469)
                      +.++.+|+.|+++.|.+....+..+..+++|+.|+++.|.++...+..+..+..|++|.++.|.+.......|..+.+|+
T Consensus       289 lfgLt~L~~L~lS~NaI~rih~d~WsftqkL~~LdLs~N~i~~l~~~sf~~L~~Le~LnLs~Nsi~~l~e~af~~lssL~  368 (873)
T KOG4194|consen  289 LFGLTSLEQLDLSYNAIQRIHIDSWSFTQKLKELDLSSNRITRLDEGSFRVLSQLEELNLSHNSIDHLAEGAFVGLSSLH  368 (873)
T ss_pred             ccccchhhhhccchhhhheeecchhhhcccceeEeccccccccCChhHHHHHHHhhhhcccccchHHHHhhHHHHhhhhh
Confidence            56677777777777777776677777777788888877777777777777777777888877777777667777777788


Q ss_pred             EeecCCCCCChhH---HHHhHcCCCCCeeeeCCCCCCHHHHHHHhcCCCCCeeeccCCCCCChhHHHHHHhCcccccccc
Q 012186          376 HLDLFGARITDSG---AAYLRNFKNLRSLEICGGGLTDAGVKHIKDLSSLTLLNLSQNCNLTDKTLELISGLTGLVSLNV  452 (469)
Q Consensus       376 ~L~l~~~~~~~~~---~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~l~~~~~~~l~~l~~L~~L~l  452 (469)
                      +|++.+|.++..+   ...+..+++|+.|++.+|++..+.-..|.+++.|++|++.+| .+..+-++.|..+ .|++|.+
T Consensus       369 ~LdLr~N~ls~~IEDaa~~f~gl~~LrkL~l~gNqlk~I~krAfsgl~~LE~LdL~~N-aiaSIq~nAFe~m-~Lk~Lv~  446 (873)
T KOG4194|consen  369 KLDLRSNELSWCIEDAAVAFNGLPSLRKLRLTGNQLKSIPKRAFSGLEALEHLDLGDN-AIASIQPNAFEPM-ELKELVM  446 (873)
T ss_pred             hhcCcCCeEEEEEecchhhhccchhhhheeecCceeeecchhhhccCcccceecCCCC-cceeecccccccc-hhhhhhh
Confidence            8888777665432   445666777888888888777776677777788888888887 6777777777777 7777776


Q ss_pred             cC
Q 012186          453 SN  454 (469)
Q Consensus       453 ~~  454 (469)
                      ..
T Consensus       447 nS  448 (873)
T KOG4194|consen  447 NS  448 (873)
T ss_pred             cc
Confidence            43

>KOG4194 consensus Membrane glycoprotein LIG-1 [Signal transduction mechanisms]

Probab=100.00  E-value=1.2e-35  Score=267.14  Aligned_cols=379  Identities=22%  Similarity=0.246  Sum_probs=330.7

Q ss_pred             HHHHHHHhcCCCccEEEecCCCCChHhhHhhhcCCCCCEEecCCCcccChhHhHhhhCCCCCCEEeCCCCCcCcHHHHHH
Q 012186           47 KWMDVIASQGSSLLSVDLSGSDVTDSGLIHLKDCSNLQSLDFNFCIQISDGGLEHLRGLSNLTSLSFRRNNAITAQGMKA  126 (469)
Q Consensus        47 ~~~~~~~~~~~~l~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~  126 (469)
                      +|....+--++..+.|++++|.+....+..|..+++|+.+.+..| .++. .|....-..+|+.|+|.+|. ++......
T Consensus        68 ~~~~l~g~lp~~t~~LdlsnNkl~~id~~~f~nl~nLq~v~l~~N-~Lt~-IP~f~~~sghl~~L~L~~N~-I~sv~se~  144 (873)
T KOG4194|consen   68 DKSRLKGFLPSQTQTLDLSNNKLSHIDFEFFYNLPNLQEVNLNKN-ELTR-IPRFGHESGHLEKLDLRHNL-ISSVTSEE  144 (873)
T ss_pred             cccccCCcCccceeeeeccccccccCcHHHHhcCCcceeeeeccc-hhhh-cccccccccceeEEeeeccc-cccccHHH
Confidence            444434445678889999999999888899999999999999883 4443 35555556689999999986 45566788


Q ss_pred             HhCCCCCCEEecccccccccccccccCCCCccEEEccCCCCCChhhhhcccCCCCCCEEEecccccChhhhhhccCCCCC
Q 012186          127 FAGLINLVKLDLERCTRIHGGLVNLKGLMKLESLNIKWCNCITDSDMKPLSGLTNLKSLQISCSKVTDSGIAYLKGLQKL  206 (469)
Q Consensus       127 ~~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~l~~L  206 (469)
                      ++.++.||+|+++.|...+..-..+..-.++++|++.+ +.++......|..+.+|..|.++.|.++..+...|.++++|
T Consensus       145 L~~l~alrslDLSrN~is~i~~~sfp~~~ni~~L~La~-N~It~l~~~~F~~lnsL~tlkLsrNrittLp~r~Fk~L~~L  223 (873)
T KOG4194|consen  145 LSALPALRSLDLSRNLISEIPKPSFPAKVNIKKLNLAS-NRITTLETGHFDSLNSLLTLKLSRNRITTLPQRSFKRLPKL  223 (873)
T ss_pred             HHhHhhhhhhhhhhchhhcccCCCCCCCCCceEEeecc-ccccccccccccccchheeeecccCcccccCHHHhhhcchh
Confidence            88999999999999865555557788888999999999 56777788889999999999999999999999999999999


Q ss_pred             CeeeccCCCCchhhHHhhhcCCCCcEEECCCCCCChhHHHHhhcCCCccEEEccCCCCchHHHHHhhCCCCCCEEecCCC
Q 012186          207 TLLNLEGCPVTAACLDSLSALGSLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNLDSC  286 (469)
Q Consensus       207 ~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~  286 (469)
                      +.|++..|.+....-..|.++++|+.|.+..|++.......|..+.++++|++..|++......|+.+++.|+.|+++.|
T Consensus       224 ~~LdLnrN~irive~ltFqgL~Sl~nlklqrN~I~kL~DG~Fy~l~kme~l~L~~N~l~~vn~g~lfgLt~L~~L~lS~N  303 (873)
T KOG4194|consen  224 ESLDLNRNRIRIVEGLTFQGLPSLQNLKLQRNDISKLDDGAFYGLEKMEHLNLETNRLQAVNEGWLFGLTSLEQLDLSYN  303 (873)
T ss_pred             hhhhccccceeeehhhhhcCchhhhhhhhhhcCcccccCcceeeecccceeecccchhhhhhcccccccchhhhhccchh
Confidence            99999999887765567899999999999999988877778889999999999999998777788899999999999999


Q ss_pred             CCChHHHHHhhCCCCCCEEeccCCCCChhhHHHhhCCCCCcEEecccCCCCchHHHhhhCCCCCcEEEccCCCCCH---H
Q 012186          287 GIGDEGLVNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISDGSLRKLAGLSSLKSLNLDARQITD---T  363 (469)
Q Consensus       287 ~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~---~  363 (469)
                      .+.......+..+++|+.|+++.|.+.......+..+..|++|.++.|.++......|..+.+|++|+++.|.+..   .
T Consensus       304 aI~rih~d~WsftqkL~~LdLs~N~i~~l~~~sf~~L~~Le~LnLs~Nsi~~l~e~af~~lssL~~LdLr~N~ls~~IED  383 (873)
T KOG4194|consen  304 AIQRIHIDSWSFTQKLKELDLSSNRITRLDEGSFRVLSQLEELNLSHNSIDHLAEGAFVGLSSLHKLDLRSNELSWCIED  383 (873)
T ss_pred             hhheeecchhhhcccceeEeccccccccCChhHHHHHHHhhhhcccccchHHHHhhHHHHhhhhhhhcCcCCeEEEEEec
Confidence            9888888889999999999999999999999999999999999999999988888888899999999999988764   2


Q ss_pred             HHHHHhcCCCCCEeecCCCCCChhHHHHhHcCCCCCeeeeCCCCCCHHHHHHHhcCCCCCeeeccCC
Q 012186          364 GLAALTSLTGLTHLDLFGARITDSGAAYLRNFKNLRSLEICGGGLTDAGVKHIKDLSSLTLLNLSQN  430 (469)
Q Consensus       364 ~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~  430 (469)
                      ....+.++++|++|.+.||++..+.-.+|..++.|+.|++.+|.+..+.+..|..+ .|++|.+..-
T Consensus       384 aa~~f~gl~~LrkL~l~gNqlk~I~krAfsgl~~LE~LdL~~NaiaSIq~nAFe~m-~Lk~Lv~nSs  449 (873)
T KOG4194|consen  384 AAVAFNGLPSLRKLRLTGNQLKSIPKRAFSGLEALEHLDLGDNAIASIQPNAFEPM-ELKELVMNSS  449 (873)
T ss_pred             chhhhccchhhhheeecCceeeecchhhhccCcccceecCCCCcceeecccccccc-hhhhhhhccc
Confidence            34567789999999999999999988999999999999999999999999999888 8998887654

>KOG0444 consensus Cytoskeletal regulator Flightless-I (contains leucine-rich and gelsolin repeats) [Cytoskeleton]

Probab=99.95  E-value=6.1e-30  Score=232.74  Aligned_cols=365  Identities=21%  Similarity=0.206  Sum_probs=261.6

Q ss_pred             CCccEEEecCCCCC-hHhhHhhhcCCCCCEEecCCCcccChhHhHhhhCCCCCCEEeCCCCCcCcHHHHHHHhCCCCCCE
Q 012186           57 SSLLSVDLSGSDVT-DSGLIHLKDCSNLQSLDFNFCIQISDGGLEHLRGLSNLTSLSFRRNNAITAQGMKAFAGLINLVK  135 (469)
Q Consensus        57 ~~l~~L~l~~~~~~-~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~  135 (469)
                      +=++.+|+++|.++ +..|.....+..++-|.+.. .++. ..|+.++.+.+|++|.+.+|..  ...-..++.++.||.
T Consensus         7 pFVrGvDfsgNDFsg~~FP~~v~qMt~~~WLkLnr-t~L~-~vPeEL~~lqkLEHLs~~HN~L--~~vhGELs~Lp~LRs   82 (1255)
T KOG0444|consen    7 PFVRGVDFSGNDFSGDRFPHDVEQMTQMTWLKLNR-TKLE-QVPEELSRLQKLEHLSMAHNQL--ISVHGELSDLPRLRS   82 (1255)
T ss_pred             ceeecccccCCcCCCCcCchhHHHhhheeEEEech-hhhh-hChHHHHHHhhhhhhhhhhhhh--HhhhhhhccchhhHH
Confidence            45778889998887 46677788888888888875 3333 3577888888888888888875  344566778888888


Q ss_pred             Eecccccccc-cccccccCCCCccEEEccCCCCCChhhhhcccCCCCCCEEEecccccChhhhhhccCCCCCCeeeccCC
Q 012186          136 LDLERCTRIH-GGLVNLKGLMKLESLNIKWCNCITDSDMKPLSGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGC  214 (469)
Q Consensus       136 L~l~~~~~~~-~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~  214 (469)
                      +.++.|..-. +.|+.+-++..|.+|+++++. +. ..+..+...+++-.|++++|++..++...+-++..|-.|++++|
T Consensus        83 v~~R~N~LKnsGiP~diF~l~dLt~lDLShNq-L~-EvP~~LE~AKn~iVLNLS~N~IetIPn~lfinLtDLLfLDLS~N  160 (1255)
T KOG0444|consen   83 VIVRDNNLKNSGIPTDIFRLKDLTILDLSHNQ-LR-EVPTNLEYAKNSIVLNLSYNNIETIPNSLFINLTDLLFLDLSNN  160 (1255)
T ss_pred             HhhhccccccCCCCchhcccccceeeecchhh-hh-hcchhhhhhcCcEEEEcccCccccCCchHHHhhHhHhhhccccc
Confidence            8888765333 445667788888888888743 33 25667777788888888888888777777778888888888888


Q ss_pred             CCchhhHHhhhcCCCCcEEECCCCCCChhHHHHhhcCCCccEEEccCCCCc-hHHHHHhhCCCCCCEEecCCCCCChHHH
Q 012186          215 PVTAACLDSLSALGSLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEIT-DECLVHLKGLTNLESLNLDSCGIGDEGL  293 (469)
Q Consensus       215 ~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~-~~~~~~~~~l~~L~~L~l~~~~~~~~~~  293 (469)
                      .+... |..+..+..|+.|.+++|.+.......+..+.+|+.|.+++.+-+ ..+|..+..+.+|+.++++.|.+.. .+
T Consensus       161 rLe~L-PPQ~RRL~~LqtL~Ls~NPL~hfQLrQLPsmtsL~vLhms~TqRTl~N~Ptsld~l~NL~dvDlS~N~Lp~-vP  238 (1255)
T KOG0444|consen  161 RLEML-PPQIRRLSMLQTLKLSNNPLNHFQLRQLPSMTSLSVLHMSNTQRTLDNIPTSLDDLHNLRDVDLSENNLPI-VP  238 (1255)
T ss_pred             hhhhc-CHHHHHHhhhhhhhcCCChhhHHHHhcCccchhhhhhhcccccchhhcCCCchhhhhhhhhccccccCCCc-ch
Confidence            77665 445677788888888888776666666667777777777776543 2345556667788888888777653 45


Q ss_pred             HHhhCCCCCCEEeccCCCCChhhHHHhhCCCCCcEEecccCCCCchHHHhhhCCCCCcEEEccCCCCCHH-HHHHHhcCC
Q 012186          294 VNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISDGSLRKLAGLSSLKSLNLDARQITDT-GLAALTSLT  372 (469)
Q Consensus       294 ~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~-~~~~l~~~~  372 (469)
                      +.+..+++|+.|++++|.++.... ..+...+|+.|+++.|+++. .|.++.+++.|+.|.+.+|+++-. .+..++.+.
T Consensus       239 ecly~l~~LrrLNLS~N~iteL~~-~~~~W~~lEtLNlSrNQLt~-LP~avcKL~kL~kLy~n~NkL~FeGiPSGIGKL~  316 (1255)
T KOG0444|consen  239 ECLYKLRNLRRLNLSGNKITELNM-TEGEWENLETLNLSRNQLTV-LPDAVCKLTKLTKLYANNNKLTFEGIPSGIGKLI  316 (1255)
T ss_pred             HHHhhhhhhheeccCcCceeeeec-cHHHHhhhhhhccccchhcc-chHHHhhhHHHHHHHhccCcccccCCccchhhhh
Confidence            566777888888888887665332 23455677777777777765 456777777777777777776643 245666777


Q ss_pred             CCCEeecCCCCCChhHHHHhHcCCCCCeeeeCCCCCCHHHHHHHhcCCCCCeeeccCCCCC
Q 012186          373 GLTHLDLFGARITDSGAAYLRNFKNLRSLEICGGGLTDAGVKHIKDLSSLTLLNLSQNCNL  433 (469)
Q Consensus       373 ~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~l  433 (469)
                      +|+.+..++|.+.- .|+.+..|+.|+.|.++.|.+... |+.+.-++.|+.|++..|+++
T Consensus       317 ~Levf~aanN~LEl-VPEglcRC~kL~kL~L~~NrLiTL-PeaIHlL~~l~vLDlreNpnL  375 (1255)
T KOG0444|consen  317 QLEVFHAANNKLEL-VPEGLCRCVKLQKLKLDHNRLITL-PEAIHLLPDLKVLDLRENPNL  375 (1255)
T ss_pred             hhHHHHhhcccccc-CchhhhhhHHHHHhcccccceeec-hhhhhhcCCcceeeccCCcCc
Confidence            77777777766543 467777777777777777776655 667777777777777777654

>KOG0444 consensus Cytoskeletal regulator Flightless-I (contains leucine-rich and gelsolin repeats) [Cytoskeleton]

Probab=99.94  E-value=1.5e-29  Score=230.28  Aligned_cols=367  Identities=21%  Similarity=0.196  Sum_probs=289.7

Q ss_pred             cCCCCCEEecCCCcccChhHhHhhhCCCCCCEEeCCCCCcCcHHHHHHHhCCCCCCEEecccccccccccccccCCCCcc
Q 012186           79 DCSNLQSLDFNFCIQISDGGLEHLRGLSNLTSLSFRRNNAITAQGMKAFAGLINLVKLDLERCTRIHGGLVNLKGLMKLE  158 (469)
Q Consensus        79 ~~~~L~~L~l~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~  158 (469)
                      -+|-+|-.+++++..-.+..|.....|.+++-|.|.+...  ...|..++.+.+|+.|.+..|. +......+..++.|+
T Consensus         5 VLpFVrGvDfsgNDFsg~~FP~~v~qMt~~~WLkLnrt~L--~~vPeEL~~lqkLEHLs~~HN~-L~~vhGELs~Lp~LR   81 (1255)
T KOG0444|consen    5 VLPFVRGVDFSGNDFSGDRFPHDVEQMTQMTWLKLNRTKL--EQVPEELSRLQKLEHLSMAHNQ-LISVHGELSDLPRLR   81 (1255)
T ss_pred             ccceeecccccCCcCCCCcCchhHHHhhheeEEEechhhh--hhChHHHHHHhhhhhhhhhhhh-hHhhhhhhccchhhH
Confidence            4566777888885433366678888999999999988765  6778999999999999998864 444556678889999


Q ss_pred             EEEccCCCCCChhhhhcccCCCCCCEEEecccccChhhhhhccCCCCCCeeeccCCCCchhhHHhhhcCCCCcEEECCCC
Q 012186          159 SLNIKWCNCITDSDMKPLSGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACLDSLSALGSLFYLNLNRC  238 (469)
Q Consensus       159 ~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~  238 (469)
                      .+.++.++--..-.+..+..+..|..|+++.|.+.. .+..+...+++-.|++++|++..+....+.+++.|-.|++++|
T Consensus        82 sv~~R~N~LKnsGiP~diF~l~dLt~lDLShNqL~E-vP~~LE~AKn~iVLNLS~N~IetIPn~lfinLtDLLfLDLS~N  160 (1255)
T KOG0444|consen   82 SVIVRDNNLKNSGIPTDIFRLKDLTILDLSHNQLRE-VPTNLEYAKNSIVLNLSYNNIETIPNSLFINLTDLLFLDLSNN  160 (1255)
T ss_pred             HHhhhccccccCCCCchhcccccceeeecchhhhhh-cchhhhhhcCcEEEEcccCccccCCchHHHhhHhHhhhccccc
Confidence            999988665555567788889999999999998874 4567888888999999999988876677788889999999999


Q ss_pred             CCChhHHHHhhcCCCccEEEccCCCCchHHHHHhhCCCCCCEEecCCCCCC-hHHHHHhhCCCCCCEEeccCCCCChhhH
Q 012186          239 QLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNLDSCGIG-DEGLVNLTGLCNLKCLELSDTQVGSSGL  317 (469)
Q Consensus       239 ~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~-~~~~~~~~~~~~L~~L~l~~~~~~~~~~  317 (469)
                      .+.. .|..+..+..|++|++++|.+.......+..+++|+.|.+++..-+ ...+..+..+.+|..++++.|.+.. .|
T Consensus       161 rLe~-LPPQ~RRL~~LqtL~Ls~NPL~hfQLrQLPsmtsL~vLhms~TqRTl~N~Ptsld~l~NL~dvDlS~N~Lp~-vP  238 (1255)
T KOG0444|consen  161 RLEM-LPPQIRRLSMLQTLKLSNNPLNHFQLRQLPSMTSLSVLHMSNTQRTLDNIPTSLDDLHNLRDVDLSENNLPI-VP  238 (1255)
T ss_pred             hhhh-cCHHHHHHhhhhhhhcCCChhhHHHHhcCccchhhhhhhcccccchhhcCCCchhhhhhhhhccccccCCCc-ch
Confidence            8765 4455677889999999999887665666677777888888876432 2234556778889999999987765 46


Q ss_pred             HHhhCCCCCcEEecccCCCCchHHHhhhCCCCCcEEEccCCCCCHHHHHHHhcCCCCCEeecCCCCCCh-hHHHHhHcCC
Q 012186          318 RHLSGLTNLESINLSFTGISDGSLRKLAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLFGARITD-SGAAYLRNFK  396 (469)
Q Consensus       318 ~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~-~~~~~~~~~~  396 (469)
                      ..+-.+++|+.|++++|.+++... ......+|++|+++.|+++.. +.++..+++|++|.+.+|+++- -+|..++.+.
T Consensus       239 ecly~l~~LrrLNLS~N~iteL~~-~~~~W~~lEtLNlSrNQLt~L-P~avcKL~kL~kLy~n~NkL~FeGiPSGIGKL~  316 (1255)
T KOG0444|consen  239 ECLYKLRNLRRLNLSGNKITELNM-TEGEWENLETLNLSRNQLTVL-PDAVCKLTKLTKLYANNNKLTFEGIPSGIGKLI  316 (1255)
T ss_pred             HHHhhhhhhheeccCcCceeeeec-cHHHHhhhhhhccccchhccc-hHHHhhhHHHHHHHhccCcccccCCccchhhhh
Confidence            677788999999999998876432 234457899999999999876 6788889999999999987763 2477788889


Q ss_pred             CCCeeeeCCCCCCHHHHHHHhcCCCCCeeeccCCCCCChhHHHHHHhCcccccccccCCC
Q 012186          397 NLRSLEICGGGLTDAGVKHIKDLSSLTLLNLSQNCNLTDKTLELISGLTGLVSLNVSNSR  456 (469)
Q Consensus       397 ~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~l~~~~~~~l~~l~~L~~L~l~~~~  456 (469)
                      .|+++..++|.+.-. |+.+..|+.|+.|.++.| .+.. .|+.+--++.|+.||++.|+
T Consensus       317 ~Levf~aanN~LElV-PEglcRC~kL~kL~L~~N-rLiT-LPeaIHlL~~l~vLDlreNp  373 (1255)
T KOG0444|consen  317 QLEVFHAANNKLELV-PEGLCRCVKLQKLKLDHN-RLIT-LPEAIHLLPDLKVLDLRENP  373 (1255)
T ss_pred             hhHHHHhhccccccC-chhhhhhHHHHHhccccc-ceee-chhhhhhcCCcceeeccCCc
Confidence            999999998877554 888999999999999998 4433 57788888999999998875

>KOG0618 consensus Serine/threonine phosphatase 2C containing leucine-rich repeats, similar to SCN circadian oscillatory protein (SCOP) [Signal transduction mechanisms]

Probab=99.92  E-value=2.3e-27  Score=225.00  Aligned_cols=379  Identities=24%  Similarity=0.253  Sum_probs=217.9

Q ss_pred             CccEEEecCCCCChHhhHhhhcCCCCCEEecCCCcccChhHhHhhhCCCCCCEEeCCCCCcCcHHHHHHHhCCCCCCEEe
Q 012186           58 SLLSVDLSGSDVTDSGLIHLKDCSNLQSLDFNFCIQISDGGLEHLRGLSNLTSLSFRRNNAITAQGMKAFAGLINLVKLD  137 (469)
Q Consensus        58 ~l~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~  137 (469)
                      ++++|+++++.+. ..|..+..+++|+.|.++.+ .+ ...+.+..++.+|+++.|.++..  ...|..+..+++|++|+
T Consensus        46 ~L~~l~lsnn~~~-~fp~~it~l~~L~~ln~s~n-~i-~~vp~s~~~~~~l~~lnL~~n~l--~~lP~~~~~lknl~~Ld  120 (1081)
T KOG0618|consen   46 KLKSLDLSNNQIS-SFPIQITLLSHLRQLNLSRN-YI-RSVPSSCSNMRNLQYLNLKNNRL--QSLPASISELKNLQYLD  120 (1081)
T ss_pred             eeEEeeccccccc-cCCchhhhHHHHhhcccchh-hH-hhCchhhhhhhcchhheeccchh--hcCchhHHhhhcccccc
Confidence            4777777777665 35555667777777777763 23 23346667777777777776654  55677777777777777


Q ss_pred             cccccccccccccccCCCCccEEEccCC------------------CCCChhhhhcccCCCCCCEEEecccccChhhhhh
Q 012186          138 LERCTRIHGGLVNLKGLMKLESLNIKWC------------------NCITDSDMKPLSGLTNLKSLQISCSKVTDSGIAY  199 (469)
Q Consensus       138 l~~~~~~~~~~~~l~~l~~L~~L~l~~~------------------~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~  199 (469)
                      ++.|. +...|..+..+..++.+..+++                  +.+......++..+.+  .+++.+|.+...   .
T Consensus       121 lS~N~-f~~~Pl~i~~lt~~~~~~~s~N~~~~~lg~~~ik~~~l~~n~l~~~~~~~i~~l~~--~ldLr~N~~~~~---d  194 (1081)
T KOG0618|consen  121 LSFNH-FGPIPLVIEVLTAEEELAASNNEKIQRLGQTSIKKLDLRLNVLGGSFLIDIYNLTH--QLDLRYNEMEVL---D  194 (1081)
T ss_pred             cchhc-cCCCchhHHhhhHHHHHhhhcchhhhhhccccchhhhhhhhhcccchhcchhhhhe--eeecccchhhhh---h
Confidence            77753 2222322222222222222221                  1111112222222222  355555554421   1


Q ss_pred             ccCCCC--------------------CCeeeccCCCCchhhHHhhhcCCCCcEEECCCCCCChhHHHHhhcCCCccEEEc
Q 012186          200 LKGLQK--------------------LTLLNLEGCPVTAACLDSLSALGSLFYLNLNRCQLSDDGCEKFSKIGSLKVLNL  259 (469)
Q Consensus       200 l~~l~~--------------------L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l  259 (469)
                      +..+++                    ++.|..+.|.+....+  ...-.+|++++++.+.+.... +++..+.+|+.++.
T Consensus       195 ls~~~~l~~l~c~rn~ls~l~~~g~~l~~L~a~~n~l~~~~~--~p~p~nl~~~dis~n~l~~lp-~wi~~~~nle~l~~  271 (1081)
T KOG0618|consen  195 LSNLANLEVLHCERNQLSELEISGPSLTALYADHNPLTTLDV--HPVPLNLQYLDISHNNLSNLP-EWIGACANLEALNA  271 (1081)
T ss_pred             hhhccchhhhhhhhcccceEEecCcchheeeeccCcceeecc--ccccccceeeecchhhhhcch-HHHHhcccceEecc
Confidence            222222                    3333333333221110  111246777777777766543 66777777777777


Q ss_pred             cCCCCchHHHHHhhCCCCCCEEecCCCCCChHHHHHhhCCCCCCEEeccCCCCChhhHHHh-------------------
Q 012186          260 GFNEITDECLVHLKGLTNLESLNLDSCGIGDEGLVNLTGLCNLKCLELSDTQVGSSGLRHL-------------------  320 (469)
Q Consensus       260 ~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~-------------------  320 (469)
                      .+|.++ ..+..+....+|+.+....|.+... +.....+.+|++|++..|.+.......+                   
T Consensus       272 n~N~l~-~lp~ri~~~~~L~~l~~~~nel~yi-p~~le~~~sL~tLdL~~N~L~~lp~~~l~v~~~~l~~ln~s~n~l~~  349 (1081)
T KOG0618|consen  272 NHNRLV-ALPLRISRITSLVSLSAAYNELEYI-PPFLEGLKSLRTLDLQSNNLPSLPDNFLAVLNASLNTLNVSSNKLST  349 (1081)
T ss_pred             cchhHH-hhHHHHhhhhhHHHHHhhhhhhhhC-CCcccccceeeeeeehhccccccchHHHhhhhHHHHHHhhhhccccc
Confidence            777764 3344444555666666666554322 2233445566666666665544332222                   


Q ss_pred             ------hCCCCCcEEecccCCCCchHHHhhhCCCCCcEEEccCCCCCHHHHHHHhcCCCCCEeecCCCCCChhHHHHhHc
Q 012186          321 ------SGLTNLESINLSFTGISDGSLRKLAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLFGARITDSGAAYLRN  394 (469)
Q Consensus       321 ------~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~  394 (469)
                            ...+.|+.|.+.+|.+++.....+.++++|+.|++++|.+...+...+.+++.|++|+++||+++.. |..+..
T Consensus       350 lp~~~e~~~~~Lq~LylanN~Ltd~c~p~l~~~~hLKVLhLsyNrL~~fpas~~~kle~LeeL~LSGNkL~~L-p~tva~  428 (1081)
T KOG0618|consen  350 LPSYEENNHAALQELYLANNHLTDSCFPVLVNFKHLKVLHLSYNRLNSFPASKLRKLEELEELNLSGNKLTTL-PDTVAN  428 (1081)
T ss_pred             cccccchhhHHHHHHHHhcCcccccchhhhccccceeeeeecccccccCCHHHHhchHHhHHHhcccchhhhh-hHHHHh
Confidence                  1234566666777777776666677777777777777777776666777777777777777777764 466677


Q ss_pred             CCCCCeeeeCCCCCCHHHHHHHhcCCCCCeeeccCCCCCChhHHHHHHhCcccccccccCCC
Q 012186          395 FKNLRSLEICGGGLTDAGVKHIKDLSSLTLLNLSQNCNLTDKTLELISGLTGLVSLNVSNSR  456 (469)
Q Consensus       395 ~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~l~~~~~~~l~~l~~L~~L~l~~~~  456 (469)
                      ++.|++|...+|++... | .+..++.|+.+|++.| ++...........|+|++||++||.
T Consensus       429 ~~~L~tL~ahsN~l~~f-P-e~~~l~qL~~lDlS~N-~L~~~~l~~~~p~p~LkyLdlSGN~  487 (1081)
T KOG0618|consen  429 LGRLHTLRAHSNQLLSF-P-ELAQLPQLKVLDLSCN-NLSEVTLPEALPSPNLKYLDLSGNT  487 (1081)
T ss_pred             hhhhHHHhhcCCceeec-h-hhhhcCcceEEecccc-hhhhhhhhhhCCCcccceeeccCCc
Confidence            77777777777776655 4 5666777777777777 6666554433333677777777775

>KOG0472 consensus Leucine-rich repeat protein [Function unknown]

Probab=99.91  E-value=2.4e-27  Score=204.69  Aligned_cols=385  Identities=21%  Similarity=0.224  Sum_probs=260.5

Q ss_pred             CCccEEEecCCCCChHhhHhhhcCCCCCEEecCCCcccChhHhHhhhCCCCCCEEeCCCCCcCcHHHHHHHhCCCCCCEE
Q 012186           57 SSLLSVDLSGSDVTDSGLIHLKDCSNLQSLDFNFCIQISDGGLEHLRGLSNLTSLSFRRNNAITAQGMKAFAGLINLVKL  136 (469)
Q Consensus        57 ~~l~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L  136 (469)
                      ..+..++.+.+.+. .+|+.+....+++.++.+.+. .. ..+..++.+..|..++..+|.+  ...|..+..+.+|..+
T Consensus        91 ~~l~~l~vs~n~ls-~lp~~i~s~~~l~~l~~s~n~-~~-el~~~i~~~~~l~dl~~~~N~i--~slp~~~~~~~~l~~l  165 (565)
T KOG0472|consen   91 EALKSLNVSHNKLS-ELPEQIGSLISLVKLDCSSNE-LK-ELPDSIGRLLDLEDLDATNNQI--SSLPEDMVNLSKLSKL  165 (565)
T ss_pred             HHHHHhhcccchHh-hccHHHhhhhhhhhhhccccc-ee-ecCchHHHHhhhhhhhcccccc--ccCchHHHHHHHHHHh
Confidence            35677888888776 577788888888888888743 32 3466777788888888888775  4567777777788888


Q ss_pred             ecccccccccccccccCCCCccEEEccCCCCCChhhhhcccCCCCCCEEEecccccChhhhhhccCCCCCCeeeccCCCC
Q 012186          137 DLERCTRIHGGLVNLKGLMKLESLNIKWCNCITDSDMKPLSGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPV  216 (469)
Q Consensus       137 ~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~  216 (469)
                      ++.++ .....++..-+++.|++|+...+  .-...|..++.+.+|..|++..|.+...+  .|.+|..|.++.++.|.+
T Consensus       166 ~~~~n-~l~~l~~~~i~m~~L~~ld~~~N--~L~tlP~~lg~l~~L~~LyL~~Nki~~lP--ef~gcs~L~Elh~g~N~i  240 (565)
T KOG0472|consen  166 DLEGN-KLKALPENHIAMKRLKHLDCNSN--LLETLPPELGGLESLELLYLRRNKIRFLP--EFPGCSLLKELHVGENQI  240 (565)
T ss_pred             hcccc-chhhCCHHHHHHHHHHhcccchh--hhhcCChhhcchhhhHHHHhhhcccccCC--CCCccHHHHHHHhcccHH
Confidence            88775 34445544444777777777652  22346677777777877877777776432  677777777777777777


Q ss_pred             chhhHHhhhcCCCCcEEECCCCCCChhHHHHhhcCCCccEEEccCCCCchHHHHHhhCCCCCCEEecCCCCCChHHHHH-
Q 012186          217 TAACLDSLSALGSLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNLDSCGIGDEGLVN-  295 (469)
Q Consensus       217 ~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~-  295 (469)
                      .....+....++++..|++.+|++.+ .|+.+..+.+|+.|++++|.++. .|..++++ .|+.|.+.+|.+...-.+. 
T Consensus       241 ~~lpae~~~~L~~l~vLDLRdNklke-~Pde~clLrsL~rLDlSNN~is~-Lp~sLgnl-hL~~L~leGNPlrTiRr~ii  317 (565)
T KOG0472|consen  241 EMLPAEHLKHLNSLLVLDLRDNKLKE-VPDEICLLRSLERLDLSNNDISS-LPYSLGNL-HLKFLALEGNPLRTIRREII  317 (565)
T ss_pred             HhhHHHHhcccccceeeecccccccc-CchHHHHhhhhhhhcccCCcccc-CCcccccc-eeeehhhcCCchHHHHHHHH
Confidence            66544555567777778887777754 45566677777777877777764 45566666 6777777776542211000 


Q ss_pred             ----------------------------------------hhCCCCCCEEeccCCCCChhhHHHhh--CCCCCcEEeccc
Q 012186          296 ----------------------------------------LTGLCNLKCLELSDTQVGSSGLRHLS--GLTNLESINLSF  333 (469)
Q Consensus       296 ----------------------------------------~~~~~~L~~L~l~~~~~~~~~~~~~~--~~~~L~~L~l~~  333 (469)
                                                              .....+.+.|++++-+.+......|.  .-.-....+++.
T Consensus       318 ~~gT~~vLKyLrs~~~~dglS~se~~~e~~~t~~~~~~~~~~~~i~tkiL~~s~~qlt~VPdEVfea~~~~~Vt~Vnfsk  397 (565)
T KOG0472|consen  318 SKGTQEVLKYLRSKIKDDGLSQSEGGTETAMTLPSESFPDIYAIITTKILDVSDKQLTLVPDEVFEAAKSEIVTSVNFSK  397 (565)
T ss_pred             cccHHHHHHHHHHhhccCCCCCCcccccccCCCCCCcccchhhhhhhhhhcccccccccCCHHHHHHhhhcceEEEeccc
Confidence                                                    00112345555555554444333332  112234444444


Q ss_pred             CCCC-----------------------chHHHhhhCCCCCcEEEccCCCCCHHHHHHHhcCCCCCEeecCCCCCChhHHH
Q 012186          334 TGIS-----------------------DGSLRKLAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLFGARITDSGAA  390 (469)
Q Consensus       334 ~~~~-----------------------~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~  390 (469)
                      |++.                       +..+..+..+++|..|++++|-+... |..++.+..|+.++++.|++.. .|.
T Consensus       398 NqL~elPk~L~~lkelvT~l~lsnn~isfv~~~l~~l~kLt~L~L~NN~Ln~L-P~e~~~lv~Lq~LnlS~NrFr~-lP~  475 (565)
T KOG0472|consen  398 NQLCELPKRLVELKELVTDLVLSNNKISFVPLELSQLQKLTFLDLSNNLLNDL-PEEMGSLVRLQTLNLSFNRFRM-LPE  475 (565)
T ss_pred             chHhhhhhhhHHHHHHHHHHHhhcCccccchHHHHhhhcceeeecccchhhhc-chhhhhhhhhheeccccccccc-chH
Confidence            4332                       22344556778888888888776665 4445566778889998887665 466


Q ss_pred             HhHcCCCCCeeeeCCCCCCHHHHHHHhcCCCCCeeeccCCCCCChhHHHHHHhCcccccccccCCCCC
Q 012186          391 YLRNFKNLRSLEICGGGLTDAGVKHIKDLSSLTLLNLSQNCNLTDKTLELISGLTGLVSLNVSNSRIT  458 (469)
Q Consensus       391 ~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~l~~~~~~~l~~l~~L~~L~l~~~~~~  458 (469)
                      .+..+..++.+-.++|++....+..+.++.+|..|++.+| .+.. +|..+++|.+|++|++++|+|.
T Consensus       476 ~~y~lq~lEtllas~nqi~~vd~~~l~nm~nL~tLDL~nN-dlq~-IPp~LgnmtnL~hLeL~gNpfr  541 (565)
T KOG0472|consen  476 CLYELQTLETLLASNNQIGSVDPSGLKNMRNLTTLDLQNN-DLQQ-IPPILGNMTNLRHLELDGNPFR  541 (565)
T ss_pred             HHhhHHHHHHHHhccccccccChHHhhhhhhcceeccCCC-chhh-CChhhccccceeEEEecCCccC
Confidence            6666677777777888888888888899999999999999 5554 5567899999999999999987

>KOG0618 consensus Serine/threonine phosphatase 2C containing leucine-rich repeats, similar to SCN circadian oscillatory protein (SCOP) [Signal transduction mechanisms]

Probab=99.90  E-value=6.4e-26  Score=215.34  Aligned_cols=386  Identities=22%  Similarity=0.248  Sum_probs=289.3

Q ss_pred             ccEEEecCCCCChHhhHhhhcCCCCCEEecCCCcccChhHhHhhhCCCCCCEEeCCCCCcCcHHHHHHHhCCCCCCEEec
Q 012186           59 LLSVDLSGSDVTDSGLIHLKDCSNLQSLDFNFCIQISDGGLEHLRGLSNLTSLSFRRNNAITAQGMKAFAGLINLVKLDL  138 (469)
Q Consensus        59 l~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~l  138 (469)
                      +..|+++.|-+-....+...++-+|++|+++++ .+.+ .+..+..+.+|+.|.++.|.+  ...|....++.+|+++.+
T Consensus        23 ~~~ln~~~N~~l~~pl~~~~~~v~L~~l~lsnn-~~~~-fp~~it~l~~L~~ln~s~n~i--~~vp~s~~~~~~l~~lnL   98 (1081)
T KOG0618|consen   23 LQILNLRRNSLLSRPLEFVEKRVKLKSLDLSNN-QISS-FPIQITLLSHLRQLNLSRNYI--RSVPSSCSNMRNLQYLNL   98 (1081)
T ss_pred             HHhhhccccccccCchHHhhheeeeEEeecccc-cccc-CCchhhhHHHHhhcccchhhH--hhCchhhhhhhcchhhee
Confidence            677788876554333455567777999999984 4444 477788899999999999976  667788999999999999


Q ss_pred             ccccccccccccccCCCCccEEEccCCCCCChhhhhcccCCC-------------------CCCEEEecccccChhhhhh
Q 012186          139 ERCTRIHGGLVNLKGLMKLESLNIKWCNCITDSDMKPLSGLT-------------------NLKSLQISCSKVTDSGIAY  199 (469)
Q Consensus       139 ~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~-------------------~L~~L~l~~~~~~~~~~~~  199 (469)
                      .++ ..+..|..+..+++|+.|+++++....  .+..+..+.                   .++.+++..+.+.......
T Consensus        99 ~~n-~l~~lP~~~~~lknl~~LdlS~N~f~~--~Pl~i~~lt~~~~~~~s~N~~~~~lg~~~ik~~~l~~n~l~~~~~~~  175 (1081)
T KOG0618|consen   99 KNN-RLQSLPASISELKNLQYLDLSFNHFGP--IPLVIEVLTAEEELAASNNEKIQRLGQTSIKKLDLRLNVLGGSFLID  175 (1081)
T ss_pred             ccc-hhhcCchhHHhhhcccccccchhccCC--CchhHHhhhHHHHHhhhcchhhhhhccccchhhhhhhhhcccchhcc
Confidence            885 678888899999999999999865432  112222222                   2445555555554444444


Q ss_pred             ccCCCCCCeeeccCCCCchhhHHhhhcC--------------------CCCcEEECCCCCCChhHHHHhhcCCCccEEEc
Q 012186          200 LKGLQKLTLLNLEGCPVTAACLDSLSAL--------------------GSLFYLNLNRCQLSDDGCEKFSKIGSLKVLNL  259 (469)
Q Consensus       200 l~~l~~L~~L~l~~~~~~~~~~~~~~~~--------------------~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l  259 (469)
                      +..+.+  .|++..|.+...   .+..+                    ++++.|....|.+..  ...-....+|+.+++
T Consensus       176 i~~l~~--~ldLr~N~~~~~---dls~~~~l~~l~c~rn~ls~l~~~g~~l~~L~a~~n~l~~--~~~~p~p~nl~~~di  248 (1081)
T KOG0618|consen  176 IYNLTH--QLDLRYNEMEVL---DLSNLANLEVLHCERNQLSELEISGPSLTALYADHNPLTT--LDVHPVPLNLQYLDI  248 (1081)
T ss_pred             hhhhhe--eeecccchhhhh---hhhhccchhhhhhhhcccceEEecCcchheeeeccCccee--eccccccccceeeec
Confidence            455554  577877766522   12222                    344444444444331  111234578999999


Q ss_pred             cCCCCchHHHHHhhCCCCCCEEecCCCCCChHHHHHhhCCCCCCEEeccCCCCChhhHHHhhCCCCCcEEecccCCCCch
Q 012186          260 GFNEITDECLVHLKGLTNLESLNLDSCGIGDEGLVNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISDG  339 (469)
Q Consensus       260 ~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~  339 (469)
                      +++.+.. .|.|+..+.+|+.+...+|.+.. .+..+....+|+.+.+..|.+.... ........|+.|++..|.+...
T Consensus       249 s~n~l~~-lp~wi~~~~nle~l~~n~N~l~~-lp~ri~~~~~L~~l~~~~nel~yip-~~le~~~sL~tLdL~~N~L~~l  325 (1081)
T KOG0618|consen  249 SHNNLSN-LPEWIGACANLEALNANHNRLVA-LPLRISRITSLVSLSAAYNELEYIP-PFLEGLKSLRTLDLQSNNLPSL  325 (1081)
T ss_pred             chhhhhc-chHHHHhcccceEecccchhHHh-hHHHHhhhhhHHHHHhhhhhhhhCC-Ccccccceeeeeeehhcccccc
Confidence            9999885 45999999999999999998854 4556667889999999999777643 3456789999999999877654


Q ss_pred             HHHhhh-------------------------CCCCCcEEEccCCCCCHHHHHHHhcCCCCCEeecCCCCCChhHHHHhHc
Q 012186          340 SLRKLA-------------------------GLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLFGARITDSGAAYLRN  394 (469)
Q Consensus       340 ~~~~~~-------------------------~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~  394 (469)
                      ....+.                         .++.|+.|.+.+|.+++..+..+.++++|+.|++++|++...+...+.+
T Consensus       326 p~~~l~v~~~~l~~ln~s~n~l~~lp~~~e~~~~~Lq~LylanN~Ltd~c~p~l~~~~hLKVLhLsyNrL~~fpas~~~k  405 (1081)
T KOG0618|consen  326 PDNFLAVLNASLNTLNVSSNKLSTLPSYEENNHAALQELYLANNHLTDSCFPVLVNFKHLKVLHLSYNRLNSFPASKLRK  405 (1081)
T ss_pred             chHHHhhhhHHHHHHhhhhccccccccccchhhHHHHHHHHhcCcccccchhhhccccceeeeeecccccccCCHHHHhc
Confidence            322111                         1246788889999999999999999999999999999999998999999


Q ss_pred             CCCCCeeeeCCCCCCHHHHHHHhcCCCCCeeeccCCCCCChhHHHHHHhCcccccccccCCCCCHHHHHhh
Q 012186          395 FKNLRSLEICGGGLTDAGVKHIKDLSSLTLLNLSQNCNLTDKTLELISGLTGLVSLNVSNSRITSAGLRHL  465 (469)
Q Consensus       395 ~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~l~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~l  465 (469)
                      ++.|++|++++|.++.. |..+..+..|+.|...+| .+...+  .+..+++|+.+|++.|++++..+..-
T Consensus       406 le~LeeL~LSGNkL~~L-p~tva~~~~L~tL~ahsN-~l~~fP--e~~~l~qL~~lDlS~N~L~~~~l~~~  472 (1081)
T KOG0618|consen  406 LEELEELNLSGNKLTTL-PDTVANLGRLHTLRAHSN-QLLSFP--ELAQLPQLKVLDLSCNNLSEVTLPEA  472 (1081)
T ss_pred             hHHhHHHhcccchhhhh-hHHHHhhhhhHHHhhcCC-ceeech--hhhhcCcceEEecccchhhhhhhhhh
Confidence            99999999999999987 688889999999999999 677654  68899999999999999998776553

>PLN03210 Resistant to P

Probab=99.89  E-value=2e-22  Score=212.02  Aligned_cols=362  Identities=21%  Similarity=0.181  Sum_probs=249.6

Q ss_pred             CCccEEEecCCCCC--hHhhHhhhcCCCCCEEecCCCc-----ccChhHhHhhhCCC-CCCEEeCCCCCcCcHHHHHHHh
Q 012186           57 SSLLSVDLSGSDVT--DSGLIHLKDCSNLQSLDFNFCI-----QISDGGLEHLRGLS-NLTSLSFRRNNAITAQGMKAFA  128 (469)
Q Consensus        57 ~~l~~L~l~~~~~~--~~~~~~~~~~~~L~~L~l~~~~-----~~~~~~~~~l~~~~-~L~~L~l~~~~~~~~~~~~~~~  128 (469)
                      .+++.+.+....+.  ......|.+|++|+.|.+....     .+....+..+..++ +|+.|.+.++..  ...|..+ 
T Consensus       532 ~~v~~i~l~~~~~~~~~i~~~aF~~m~~L~~L~~~~~~~~~~~~~~~~lp~~~~~lp~~Lr~L~~~~~~l--~~lP~~f-  608 (1153)
T PLN03210        532 KKVLGITLDIDEIDELHIHENAFKGMRNLLFLKFYTKKWDQKKEVRWHLPEGFDYLPPKLRLLRWDKYPL--RCMPSNF-  608 (1153)
T ss_pred             ceeeEEEeccCccceeeecHHHHhcCccccEEEEecccccccccceeecCcchhhcCcccEEEEecCCCC--CCCCCcC-
Confidence            35565555433332  1234668899999999986421     11222344555554 799999998764  4456555 


Q ss_pred             CCCCCCEEecccccccccccccccCCCCccEEEccCCCCCChhhhhcccCCCCCCEEEecccccChhhhhhccCCCCCCe
Q 012186          129 GLINLVKLDLERCTRIHGGLVNLKGLMKLESLNIKWCNCITDSDMKPLSGLTNLKSLQISCSKVTDSGIAYLKGLQKLTL  208 (469)
Q Consensus       129 ~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~l~~L~~  208 (469)
                      ...+|+.|+++++ .+...+..+..+++|+.|+++++..+...  ..+..+++|+.|++.+|......+..+..+++|+.
T Consensus       609 ~~~~L~~L~L~~s-~l~~L~~~~~~l~~Lk~L~Ls~~~~l~~i--p~ls~l~~Le~L~L~~c~~L~~lp~si~~L~~L~~  685 (1153)
T PLN03210        609 RPENLVKLQMQGS-KLEKLWDGVHSLTGLRNIDLRGSKNLKEI--PDLSMATNLETLKLSDCSSLVELPSSIQYLNKLED  685 (1153)
T ss_pred             CccCCcEEECcCc-cccccccccccCCCCCEEECCCCCCcCcC--CccccCCcccEEEecCCCCccccchhhhccCCCCE
Confidence            5689999999986 46666677788999999999987665533  35778899999999987655555667888999999


Q ss_pred             eeccCCCCchhhHHhhhcCCCCcEEECCCCCCChhHHHHhhcCCCccEEEccCCCCchHHHHHhhCCCCCCEEecCCCCC
Q 012186          209 LNLEGCPVTAACLDSLSALGSLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNLDSCGI  288 (469)
Q Consensus       209 L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~  288 (469)
                      |++++|......|..+ .+++|+.|++++|......+.   ..++|+.|+++++.+.. .|..+ .+++|++|.+.++..
T Consensus       686 L~L~~c~~L~~Lp~~i-~l~sL~~L~Lsgc~~L~~~p~---~~~nL~~L~L~~n~i~~-lP~~~-~l~~L~~L~l~~~~~  759 (1153)
T PLN03210        686 LDMSRCENLEILPTGI-NLKSLYRLNLSGCSRLKSFPD---ISTNISWLDLDETAIEE-FPSNL-RLENLDELILCEMKS  759 (1153)
T ss_pred             EeCCCCCCcCccCCcC-CCCCCCEEeCCCCCCcccccc---ccCCcCeeecCCCcccc-ccccc-cccccccccccccch
Confidence            9999875443334433 688999999998864433332   24688999999888753 33333 467888888876421


Q ss_pred             Ch-------HHHHHhhCCCCCCEEeccCCCCChhhHHHhhCCCCCcEEecccCCCCchHHHhhhCCCCCcEEEccCCCCC
Q 012186          289 GD-------EGLVNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISDGSLRKLAGLSSLKSLNLDARQIT  361 (469)
Q Consensus       289 ~~-------~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~  361 (469)
                      ..       ..+.....+++|+.|++.+|......+..++.+++|+.|++++|......|..+ .+++|+.|++++|...
T Consensus       760 ~~l~~~~~~l~~~~~~~~~sL~~L~Ls~n~~l~~lP~si~~L~~L~~L~Ls~C~~L~~LP~~~-~L~sL~~L~Ls~c~~L  838 (1153)
T PLN03210        760 EKLWERVQPLTPLMTMLSPSLTRLFLSDIPSLVELPSSIQNLHKLEHLEIENCINLETLPTGI-NLESLESLDLSGCSRL  838 (1153)
T ss_pred             hhccccccccchhhhhccccchheeCCCCCCccccChhhhCCCCCCEEECCCCCCcCeeCCCC-CccccCEEECCCCCcc
Confidence            11       111112345688999998887666667778889999999998875433333333 5788999999886543


Q ss_pred             HHHHHHHhcCCCCCEeecCCCCCChhHHHHhHcCCCCCeeeeCCCCCCHHHHHHHhcCCCCCeeeccCCCCCCh
Q 012186          362 DTGLAALTSLTGLTHLDLFGARITDSGAAYLRNFKNLRSLEICGGGLTDAGVKHIKDLSSLTLLNLSQNCNLTD  435 (469)
Q Consensus       362 ~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~l~~  435 (469)
                      ...+.   ...+|+.|++++|.++. +|.++..+++|+.|++++|.-....|..+..+++|+.+++++|+.+..
T Consensus       839 ~~~p~---~~~nL~~L~Ls~n~i~~-iP~si~~l~~L~~L~L~~C~~L~~l~~~~~~L~~L~~L~l~~C~~L~~  908 (1153)
T PLN03210        839 RTFPD---ISTNISDLNLSRTGIEE-VPWWIEKFSNLSFLDMNGCNNLQRVSLNISKLKHLETVDFSDCGALTE  908 (1153)
T ss_pred             ccccc---cccccCEeECCCCCCcc-ChHHHhcCCCCCEEECCCCCCcCccCcccccccCCCeeecCCCccccc
Confidence            32121   23578899999888876 477788889999999988654444455667788888899998876654

syringae 6; Provisional

>KOG0472 consensus Leucine-rich repeat protein [Function unknown]

Probab=99.89  E-value=2.2e-26  Score=198.78  Aligned_cols=386  Identities=19%  Similarity=0.210  Sum_probs=271.4

Q ss_pred             CCCccEEEecCCCCChHhhHhhhcCCCCCEEecCCCcccChhHhHhhhCCCCCCEEeCCCCCcCcHHHHHHHhCCCCCCE
Q 012186           56 GSSLLSVDLSGSDVTDSGLIHLKDCSNLQSLDFNFCIQISDGGLEHLRGLSNLTSLSFRRNNAITAQGMKAFAGLINLVK  135 (469)
Q Consensus        56 ~~~l~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~  135 (469)
                      ...+++++++++..+ ..|.+++++..++.++++++ ++ ...+..++...+|+.++.+.+..  ...+..++.+..|..
T Consensus        67 L~~l~vl~~~~n~l~-~lp~aig~l~~l~~l~vs~n-~l-s~lp~~i~s~~~l~~l~~s~n~~--~el~~~i~~~~~l~d  141 (565)
T KOG0472|consen   67 LACLTVLNVHDNKLS-QLPAAIGELEALKSLNVSHN-KL-SELPEQIGSLISLVKLDCSSNEL--KELPDSIGRLLDLED  141 (565)
T ss_pred             ccceeEEEeccchhh-hCCHHHHHHHHHHHhhcccc-hH-hhccHHHhhhhhhhhhhccccce--eecCchHHHHhhhhh
Confidence            355677777777665 45666777777777777773 33 33567777778888888887765  445667777778888


Q ss_pred             EecccccccccccccccCCCCccEEEccCCCCCChhhhhcccCCCCCCEEEecccccChhhhhhccCCCCCCeeeccCCC
Q 012186          136 LDLERCTRIHGGLVNLKGLMKLESLNIKWCNCITDSDMKPLSGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCP  215 (469)
Q Consensus       136 L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~  215 (469)
                      ++..+| .+...|..+.++.++..+++.++ .+....+..+. ++.|++++...|-+. ..+..++++.+|+.|.+..|+
T Consensus       142 l~~~~N-~i~slp~~~~~~~~l~~l~~~~n-~l~~l~~~~i~-m~~L~~ld~~~N~L~-tlP~~lg~l~~L~~LyL~~Nk  217 (565)
T KOG0472|consen  142 LDATNN-QISSLPEDMVNLSKLSKLDLEGN-KLKALPENHIA-MKRLKHLDCNSNLLE-TLPPELGGLESLELLYLRRNK  217 (565)
T ss_pred             hhcccc-ccccCchHHHHHHHHHHhhcccc-chhhCCHHHHH-HHHHHhcccchhhhh-cCChhhcchhhhHHHHhhhcc
Confidence            887775 56677777788888888888773 34443444444 888888888777766 445678888999999999998


Q ss_pred             CchhhHHhhhcCCCCcEEECCCCCCChhHHHHhhcCCCccEEEccCCCCchHHHHHhhCCCCCCEEecCCCCCChHHHHH
Q 012186          216 VTAACLDSLSALGSLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNLDSCGIGDEGLVN  295 (469)
Q Consensus       216 ~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~  295 (469)
                      +... | .|.++..|+++++..|++.-...+....++++..|+++.|++. ..|..+.-+.+|..|++++|.++.. +..
T Consensus       218 i~~l-P-ef~gcs~L~Elh~g~N~i~~lpae~~~~L~~l~vLDLRdNklk-e~Pde~clLrsL~rLDlSNN~is~L-p~s  293 (565)
T KOG0472|consen  218 IRFL-P-EFPGCSLLKELHVGENQIEMLPAEHLKHLNSLLVLDLRDNKLK-EVPDEICLLRSLERLDLSNNDISSL-PYS  293 (565)
T ss_pred             cccC-C-CCCccHHHHHHHhcccHHHhhHHHHhcccccceeeeccccccc-cCchHHHHhhhhhhhcccCCccccC-Ccc
Confidence            8764 3 7888999999999998887655566678999999999999998 4677788888999999999988764 446


Q ss_pred             hhCCCCCCEEeccCCCCChhhHHHh-----------------------------------------hCCCCCcEEecccC
Q 012186          296 LTGLCNLKCLELSDTQVGSSGLRHL-----------------------------------------SGLTNLESINLSFT  334 (469)
Q Consensus       296 ~~~~~~L~~L~l~~~~~~~~~~~~~-----------------------------------------~~~~~L~~L~l~~~  334 (469)
                      ++++ +|+.|.+.||++...-...+                                         ...-+.+.|++++-
T Consensus       294 Lgnl-hL~~L~leGNPlrTiRr~ii~~gT~~vLKyLrs~~~~dglS~se~~~e~~~t~~~~~~~~~~~~i~tkiL~~s~~  372 (565)
T KOG0472|consen  294 LGNL-HLKFLALEGNPLRTIRREIISKGTQEVLKYLRSKIKDDGLSQSEGGTETAMTLPSESFPDIYAIITTKILDVSDK  372 (565)
T ss_pred             cccc-eeeehhhcCCchHHHHHHHHcccHHHHHHHHHHhhccCCCCCCcccccccCCCCCCcccchhhhhhhhhhccccc
Confidence            7888 89999999987533211110                                         11234667777766


Q ss_pred             CCCchHHHhhhC--CCCCcEEEccCCCCCHH-----------------------HHHHHhcCCCCCEeecCCCCCChhHH
Q 012186          335 GISDGSLRKLAG--LSSLKSLNLDARQITDT-----------------------GLAALTSLTGLTHLDLFGARITDSGA  389 (469)
Q Consensus       335 ~~~~~~~~~~~~--~~~L~~L~l~~~~~~~~-----------------------~~~~l~~~~~L~~L~l~~~~~~~~~~  389 (469)
                      +++....+.|..  -.-....+++.|++.+.                       .+..+..+++|.-|++++|.+.+ .|
T Consensus       373 qlt~VPdEVfea~~~~~Vt~VnfskNqL~elPk~L~~lkelvT~l~lsnn~isfv~~~l~~l~kLt~L~L~NN~Ln~-LP  451 (565)
T KOG0472|consen  373 QLTLVPDEVFEAAKSEIVTSVNFSKNQLCELPKRLVELKELVTDLVLSNNKISFVPLELSQLQKLTFLDLSNNLLND-LP  451 (565)
T ss_pred             ccccCCHHHHHHhhhcceEEEecccchHhhhhhhhHHHHHHHHHHHhhcCccccchHHHHhhhcceeeecccchhhh-cc
Confidence            655544333321  12255666666665443                       22334456777777777776655 45


Q ss_pred             HHhHcCCCCCeeeeCCCCCCHHHHHHHhcCCCCCeeeccCCCCCChhHHHHHHhCcccccccccCCCCC
Q 012186          390 AYLRNFKNLRSLEICGGGLTDAGVKHIKDLSSLTLLNLSQNCNLTDKTLELISGLTGLVSLNVSNSRIT  458 (469)
Q Consensus       390 ~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~l~~~~~~~l~~l~~L~~L~l~~~~~~  458 (469)
                      ..+..+..||.|+++.|.+... |+.+.....++.+-.++| ++....+..+..+..|..||+.+|.+.
T Consensus       452 ~e~~~lv~Lq~LnlS~NrFr~l-P~~~y~lq~lEtllas~n-qi~~vd~~~l~nm~nL~tLDL~nNdlq  518 (565)
T KOG0472|consen  452 EEMGSLVRLQTLNLSFNRFRML-PECLYELQTLETLLASNN-QIGSVDPSGLKNMRNLTTLDLQNNDLQ  518 (565)
T ss_pred             hhhhhhhhhheecccccccccc-hHHHhhHHHHHHHHhccc-cccccChHHhhhhhhcceeccCCCchh
Confidence            5666677777777777777665 665555666666666667 777777777888888888888888754

>PLN03210 Resistant to P

Probab=99.88  E-value=8.2e-22  Score=207.38  Aligned_cols=342  Identities=21%  Similarity=0.173  Sum_probs=248.4

Q ss_pred             HhHhhhCCCCCCEEeCCCCCc-----CcHHHHHHHhCCC-CCCEEecccccccccccccccCCCCccEEEccCCCCCChh
Q 012186           98 GLEHLRGLSNLTSLSFRRNNA-----ITAQGMKAFAGLI-NLVKLDLERCTRIHGGLVNLKGLMKLESLNIKWCNCITDS  171 (469)
Q Consensus        98 ~~~~l~~~~~L~~L~l~~~~~-----~~~~~~~~~~~l~-~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~  171 (469)
                      ...+|.+|++|+.|++..+..     .....|..+..++ +|+.|.+.+++ ....|..+ ...+|+.|++.++. +.. 
T Consensus       550 ~~~aF~~m~~L~~L~~~~~~~~~~~~~~~~lp~~~~~lp~~Lr~L~~~~~~-l~~lP~~f-~~~~L~~L~L~~s~-l~~-  625 (1153)
T PLN03210        550 HENAFKGMRNLLFLKFYTKKWDQKKEVRWHLPEGFDYLPPKLRLLRWDKYP-LRCMPSNF-RPENLVKLQMQGSK-LEK-  625 (1153)
T ss_pred             cHHHHhcCccccEEEEecccccccccceeecCcchhhcCcccEEEEecCCC-CCCCCCcC-CccCCcEEECcCcc-ccc-
Confidence            456788999999999865421     1123445555554 69999998864 45555555 56899999999854 432 


Q ss_pred             hhhcccCCCCCCEEEecccccChhhhhhccCCCCCCeeeccCCCCchhhHHhhhcCCCCcEEECCCCCCChhHHHHhhcC
Q 012186          172 DMKPLSGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACLDSLSALGSLFYLNLNRCQLSDDGCEKFSKI  251 (469)
Q Consensus       172 ~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~  251 (469)
                      .+..+..+++|+.++++++...... ..+..+++|++|++++|......|..+..+++|+.|++.+|......+..+ .+
T Consensus       626 L~~~~~~l~~Lk~L~Ls~~~~l~~i-p~ls~l~~Le~L~L~~c~~L~~lp~si~~L~~L~~L~L~~c~~L~~Lp~~i-~l  703 (1153)
T PLN03210        626 LWDGVHSLTGLRNIDLRGSKNLKEI-PDLSMATNLETLKLSDCSSLVELPSSIQYLNKLEDLDMSRCENLEILPTGI-NL  703 (1153)
T ss_pred             cccccccCCCCCEEECCCCCCcCcC-CccccCCcccEEEecCCCCccccchhhhccCCCCEEeCCCCCCcCccCCcC-CC
Confidence            3455678999999999876432222 247788999999999986656667888999999999999876433344333 68


Q ss_pred             CCccEEEccCCCCchHHHHHhhCCCCCCEEecCCCCCChHHHHHhhCCCCCCEEeccCCCCCh-------hhHHHhhCCC
Q 012186          252 GSLKVLNLGFNEITDECLVHLKGLTNLESLNLDSCGIGDEGLVNLTGLCNLKCLELSDTQVGS-------SGLRHLSGLT  324 (469)
Q Consensus       252 ~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~-------~~~~~~~~~~  324 (469)
                      ++|+.|++++|......+.   ...+|+.|+++++.+... +.. ..+++|+.|.+.++....       ..+.....++
T Consensus       704 ~sL~~L~Lsgc~~L~~~p~---~~~nL~~L~L~~n~i~~l-P~~-~~l~~L~~L~l~~~~~~~l~~~~~~l~~~~~~~~~  778 (1153)
T PLN03210        704 KSLYRLNLSGCSRLKSFPD---ISTNISWLDLDETAIEEF-PSN-LRLENLDELILCEMKSEKLWERVQPLTPLMTMLSP  778 (1153)
T ss_pred             CCCCEEeCCCCCCcccccc---ccCCcCeeecCCCccccc-ccc-ccccccccccccccchhhccccccccchhhhhccc
Confidence            8999999999864433332   246899999999876543 222 257788888887643211       1111223468


Q ss_pred             CCcEEecccCCCCchHHHhhhCCCCCcEEEccCCCCCHHHHHHHhcCCCCCEeecCCCCCChhHHHHhHcCCCCCeeeeC
Q 012186          325 NLESINLSFTGISDGSLRKLAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLFGARITDSGAAYLRNFKNLRSLEIC  404 (469)
Q Consensus       325 ~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~  404 (469)
                      +|+.|.+++|......|..+.++++|+.|++++|......+..+ .+++|+.|++++|......|..   .++|+.|+++
T Consensus       779 sL~~L~Ls~n~~l~~lP~si~~L~~L~~L~Ls~C~~L~~LP~~~-~L~sL~~L~Ls~c~~L~~~p~~---~~nL~~L~Ls  854 (1153)
T PLN03210        779 SLTRLFLSDIPSLVELPSSIQNLHKLEHLEIENCINLETLPTGI-NLESLESLDLSGCSRLRTFPDI---STNISDLNLS  854 (1153)
T ss_pred             cchheeCCCCCCccccChhhhCCCCCCEEECCCCCCcCeeCCCC-CccccCEEECCCCCcccccccc---ccccCEeECC
Confidence            99999999997766678889999999999999975433323333 6899999999998655444432   4789999999


Q ss_pred             CCCCCHHHHHHHhcCCCCCeeeccCCCCCChhHHHHHHhCcccccccccCCC
Q 012186          405 GGGLTDAGVKHIKDLSSLTLLNLSQNCNLTDKTLELISGLTGLVSLNVSNSR  456 (469)
Q Consensus       405 ~~~~~~~~~~~l~~~~~L~~L~l~~~~~l~~~~~~~l~~l~~L~~L~l~~~~  456 (469)
                      +|.+++. |.++..+++|+.|++++|.++... +..+..+++|+.+++++|.
T Consensus       855 ~n~i~~i-P~si~~l~~L~~L~L~~C~~L~~l-~~~~~~L~~L~~L~l~~C~  904 (1153)
T PLN03210        855 RTGIEEV-PWWIEKFSNLSFLDMNGCNNLQRV-SLNISKLKHLETVDFSDCG  904 (1153)
T ss_pred             CCCCccC-hHHHhcCCCCCEEECCCCCCcCcc-CcccccccCCCeeecCCCc
Confidence            9999875 778999999999999999888774 4456778899999999884

syringae 6; Provisional

>cd00116 LRR_RI Leucine-rich repeats (LRRs), ribonuclease inhibitor (RI)-like subfamily

Probab=99.84  E-value=8e-19  Score=161.29  Aligned_cols=209  Identities=29%  Similarity=0.393  Sum_probs=110.5

Q ss_pred             hhcCCCccEEEccCCCCchHHHHHhhCC---CCCCEEecCCCCCChHHH----HHhhCC-CCCCEEeccCCCCChh----
Q 012186          248 FSKIGSLKVLNLGFNEITDECLVHLKGL---TNLESLNLDSCGIGDEGL----VNLTGL-CNLKCLELSDTQVGSS----  315 (469)
Q Consensus       248 ~~~~~~L~~L~l~~~~~~~~~~~~~~~l---~~L~~L~l~~~~~~~~~~----~~~~~~-~~L~~L~l~~~~~~~~----  315 (469)
                      +..+++|+.|+++++.+....+..+..+   ++|+.|++++|.+.....    ..+..+ ++|+.|++.+|.+...    
T Consensus        77 l~~~~~L~~L~l~~~~~~~~~~~~~~~l~~~~~L~~L~ls~~~~~~~~~~~l~~~l~~~~~~L~~L~L~~n~l~~~~~~~  156 (319)
T cd00116          77 LTKGCGLQELDLSDNALGPDGCGVLESLLRSSSLQELKLNNNGLGDRGLRLLAKGLKDLPPALEKLVLGRNRLEGASCEA  156 (319)
T ss_pred             HHhcCceeEEEccCCCCChhHHHHHHHHhccCcccEEEeeCCccchHHHHHHHHHHHhCCCCceEEEcCCCcCCchHHHH
Confidence            3445555555555555543223332222   236666666555542221    123334 5566666666655422    


Q ss_pred             hHHHhhCCCCCcEEecccCCCCchHH----HhhhCCCCCcEEEccCCCCCHHHHH----HHhcCCCCCEeecCCCCCChh
Q 012186          316 GLRHLSGLTNLESINLSFTGISDGSL----RKLAGLSSLKSLNLDARQITDTGLA----ALTSLTGLTHLDLFGARITDS  387 (469)
Q Consensus       316 ~~~~~~~~~~L~~L~l~~~~~~~~~~----~~~~~~~~L~~L~l~~~~~~~~~~~----~l~~~~~L~~L~l~~~~~~~~  387 (469)
                      ....+..+++|+.|++++|.+.+...    ..+..+++|+.|++++|.++.....    .+..+++|++|++++|.+++.
T Consensus       157 ~~~~~~~~~~L~~L~l~~n~l~~~~~~~l~~~l~~~~~L~~L~L~~n~i~~~~~~~l~~~~~~~~~L~~L~ls~n~l~~~  236 (319)
T cd00116         157 LAKALRANRDLKELNLANNGIGDAGIRALAEGLKANCNLEVLDLNNNGLTDEGASALAETLASLKSLEVLNLGDNNLTDA  236 (319)
T ss_pred             HHHHHHhCCCcCEEECcCCCCchHHHHHHHHHHHhCCCCCEEeccCCccChHHHHHHHHHhcccCCCCEEecCCCcCchH
Confidence            12233455566666666666654322    2233445677777776666544332    334566677777777776654


Q ss_pred             HHHHhHc-----CCCCCeeeeCCCCCCHHH----HHHHhcCCCCCeeeccCCCCCChhHHH----HHHhC-ccccccccc
Q 012186          388 GAAYLRN-----FKNLRSLEICGGGLTDAG----VKHIKDLSSLTLLNLSQNCNLTDKTLE----LISGL-TGLVSLNVS  453 (469)
Q Consensus       388 ~~~~~~~-----~~~L~~L~l~~~~~~~~~----~~~l~~~~~L~~L~l~~~~~l~~~~~~----~l~~l-~~L~~L~l~  453 (469)
                      ....+..     .+.|+.|++++|.+++..    ...+..+++|+++++++| .+......    .+... +.|+++++.
T Consensus       237 ~~~~l~~~~~~~~~~L~~L~l~~n~i~~~~~~~l~~~~~~~~~L~~l~l~~N-~l~~~~~~~~~~~~~~~~~~~~~~~~~  315 (319)
T cd00116         237 GAAALASALLSPNISLLTLSLSCNDITDDGAKDLAEVLAEKESLLELDLRGN-KFGEEGAQLLAESLLEPGNELESLWVK  315 (319)
T ss_pred             HHHHHHHHHhccCCCceEEEccCCCCCcHHHHHHHHHHhcCCCccEEECCCC-CCcHHHHHHHHHHHhhcCCchhhcccC
Confidence            4333321     257777777777776322    233445567777777777 56654332    22333 567777777


Q ss_pred             CCCC
Q 012186          454 NSRI  457 (469)
Q Consensus       454 ~~~~  457 (469)
                      ++++
T Consensus       316 ~~~~  319 (319)
T cd00116         316 DDSF  319 (319)
T ss_pred             CCCC
Confidence            7654

LRRs are 20-29 residue sequence motifs present in many proteins that participate in protein-protein interactions and have different functions and cellular locations. LRRs correspond to structural units consisting of a beta strand (LxxLxLxxN/CxL conserved pattern) and an alpha helix. This alignment contains 12 strands corresponding to 11 full repeats, consistent with the extent observed in the subfamily acting as Ran GTPase Activating Proteins (RanGAP1).

>cd00116 LRR_RI Leucine-rich repeats (LRRs), ribonuclease inhibitor (RI)-like subfamily

Probab=99.84  E-value=6.5e-19  Score=161.92  Aligned_cols=246  Identities=30%  Similarity=0.407  Sum_probs=178.6

Q ss_pred             HhhhcCCCCcEEECCCCCCChhH----HHHhhcCCCccEEEccCCCCc------hHHHHHhhCCCCCCEEecCCCCCChH
Q 012186          222 DSLSALGSLFYLNLNRCQLSDDG----CEKFSKIGSLKVLNLGFNEIT------DECLVHLKGLTNLESLNLDSCGIGDE  291 (469)
Q Consensus       222 ~~~~~~~~L~~L~l~~~~~~~~~----~~~~~~~~~L~~L~l~~~~~~------~~~~~~~~~l~~L~~L~l~~~~~~~~  291 (469)
                      ..+..+++|+.+.+.++.+....    +..+...++++.++++++.+.      ...+..+..+++|+.|++++|.+...
T Consensus        17 ~~~~~l~~L~~l~l~~~~l~~~~~~~i~~~l~~~~~l~~l~l~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~   96 (319)
T cd00116          17 ELLPKLLCLQVLRLEGNTLGEEAAKALASALRPQPSLKELCLSLNETGRIPRGLQSLLQGLTKGCGLQELDLSDNALGPD   96 (319)
T ss_pred             HHHHHHhhccEEeecCCCCcHHHHHHHHHHHhhCCCceEEeccccccCCcchHHHHHHHHHHhcCceeEEEccCCCCChh
Confidence            34444555666666666654432    223345566777777766554      22345667789999999999988755


Q ss_pred             HHHHhhCCC---CCCEEeccCCCCChhhH----HHhhCC-CCCcEEecccCCCCchH----HHhhhCCCCCcEEEccCCC
Q 012186          292 GLVNLTGLC---NLKCLELSDTQVGSSGL----RHLSGL-TNLESINLSFTGISDGS----LRKLAGLSSLKSLNLDARQ  359 (469)
Q Consensus       292 ~~~~~~~~~---~L~~L~l~~~~~~~~~~----~~~~~~-~~L~~L~l~~~~~~~~~----~~~~~~~~~L~~L~l~~~~  359 (469)
                      ....+..+.   +|++|++++|.+.....    ..+..+ ++|+.|++++|.+....    ...+..+++|++|++++|.
T Consensus        97 ~~~~~~~l~~~~~L~~L~ls~~~~~~~~~~~l~~~l~~~~~~L~~L~L~~n~l~~~~~~~~~~~~~~~~~L~~L~l~~n~  176 (319)
T cd00116          97 GCGVLESLLRSSSLQELKLNNNGLGDRGLRLLAKGLKDLPPALEKLVLGRNRLEGASCEALAKALRANRDLKELNLANNG  176 (319)
T ss_pred             HHHHHHHHhccCcccEEEeeCCccchHHHHHHHHHHHhCCCCceEEEcCCCcCCchHHHHHHHHHHhCCCcCEEECcCCC
Confidence            555555444   49999999998874333    334566 89999999999988433    3345667899999999999


Q ss_pred             CCHHHH----HHHhcCCCCCEeecCCCCCChhHH----HHhHcCCCCCeeeeCCCCCCHHHHHHHhc-----CCCCCeee
Q 012186          360 ITDTGL----AALTSLTGLTHLDLFGARITDSGA----AYLRNFKNLRSLEICGGGLTDAGVKHIKD-----LSSLTLLN  426 (469)
Q Consensus       360 ~~~~~~----~~l~~~~~L~~L~l~~~~~~~~~~----~~~~~~~~L~~L~l~~~~~~~~~~~~l~~-----~~~L~~L~  426 (469)
                      ++....    ..+..+++|++|++++|.+++...    ..+..+++|+.|++++|.+++..+..+..     .+.|++|+
T Consensus       177 l~~~~~~~l~~~l~~~~~L~~L~L~~n~i~~~~~~~l~~~~~~~~~L~~L~ls~n~l~~~~~~~l~~~~~~~~~~L~~L~  256 (319)
T cd00116         177 IGDAGIRALAEGLKANCNLEVLDLNNNGLTDEGASALAETLASLKSLEVLNLGDNNLTDAGAAALASALLSPNISLLTLS  256 (319)
T ss_pred             CchHHHHHHHHHHHhCCCCCEEeccCCccChHHHHHHHHHhcccCCCCEEecCCCcCchHHHHHHHHHHhccCCCceEEE
Confidence            985433    344567799999999999886544    34567889999999999999865555532     37999999


Q ss_pred             ccCCCCCChh----HHHHHHhCcccccccccCCCCCHHHHHhhhhc
Q 012186          427 LSQNCNLTDK----TLELISGLTGLVSLNVSNSRITSAGLRHLNHA  468 (469)
Q Consensus       427 l~~~~~l~~~----~~~~l~~l~~L~~L~l~~~~~~~~~~~~l~~~  468 (469)
                      +++| .++..    ....+..+++|+.+++++|++++.+...++.+
T Consensus       257 l~~n-~i~~~~~~~l~~~~~~~~~L~~l~l~~N~l~~~~~~~~~~~  301 (319)
T cd00116         257 LSCN-DITDDGAKDLAEVLAEKESLLELDLRGNKFGEEGAQLLAES  301 (319)
T ss_pred             ccCC-CCCcHHHHHHHHHHhcCCCccEEECCCCCCcHHHHHHHHHH
Confidence            9999 67632    33455677899999999999999988877643

LRRs are 20-29 residue sequence motifs present in many proteins that participate in protein-protein interactions and have different functions and cellular locations. LRRs correspond to structural units consisting of a beta strand (LxxLxLxxN/CxL conserved pattern) and an alpha helix. This alignment contains 12 strands corresponding to 11 full repeats, consistent with the extent observed in the subfamily acting as Ran GTPase Activating Proteins (RanGAP1).

>KOG4237 consensus Extracellular matrix protein slit, contains leucine-rich and EGF-like repeats [Extracellular structures; Signal transduction mechanisms]

Probab=99.80  E-value=1.2e-21  Score=169.27  Aligned_cols=393  Identities=22%  Similarity=0.163  Sum_probs=240.6

Q ss_pred             hcCCCccEEEecCCCCChHhhHhhhcCCCCCEEecCCCcccChhHhHhhhCCCCCCEEeCCCCCcCcHHHHHHHhCCCCC
Q 012186           54 SQGSSLLSVDLSGSDVTDSGLIHLKDCSNLQSLDFNFCIQISDGGLEHLRGLSNLTSLSFRRNNAITAQGMKAFAGLINL  133 (469)
Q Consensus        54 ~~~~~l~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~l~~L  133 (469)
                      .-++....|.|..|+|+...+..|+.+++||+|+|++ +.|+.+.+.+|..+++|..|-+.++..+.+.....|+.+..|
T Consensus        64 ~LP~~tveirLdqN~I~~iP~~aF~~l~~LRrLdLS~-N~Is~I~p~AF~GL~~l~~Lvlyg~NkI~~l~k~~F~gL~sl  142 (498)
T KOG4237|consen   64 NLPPETVEIRLDQNQISSIPPGAFKTLHRLRRLDLSK-NNISFIAPDAFKGLASLLSLVLYGNNKITDLPKGAFGGLSSL  142 (498)
T ss_pred             cCCCcceEEEeccCCcccCChhhccchhhhceecccc-cchhhcChHhhhhhHhhhHHHhhcCCchhhhhhhHhhhHHHH
Confidence            4567889999999999988889999999999999999 589999999999999999888887555667767899999999


Q ss_pred             CEEecccccccccccccccCCCCccEEEccCCCCCChhhhhcccCCCCCCEEEecccccCh------------hhhhhcc
Q 012186          134 VKLDLERCTRIHGGLVNLKGLMKLESLNIKWCNCITDSDMKPLSGLTNLKSLQISCSKVTD------------SGIAYLK  201 (469)
Q Consensus       134 ~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~------------~~~~~l~  201 (469)
                      +-|.+.-|...-.....+..+++|..|.+.. +.+.......+..+..++.+++..+.+..            ..+..++
T Consensus       143 qrLllNan~i~Cir~~al~dL~~l~lLslyD-n~~q~i~~~tf~~l~~i~tlhlA~np~icdCnL~wla~~~a~~~iets  221 (498)
T KOG4237|consen  143 QRLLLNANHINCIRQDALRDLPSLSLLSLYD-NKIQSICKGTFQGLAAIKTLHLAQNPFICDCNLPWLADDLAMNPIETS  221 (498)
T ss_pred             HHHhcChhhhcchhHHHHHHhhhcchhcccc-hhhhhhccccccchhccchHhhhcCccccccccchhhhHHhhchhhcc
Confidence            9999887655555567788999999999887 33444444577778888888876554221            0111112


Q ss_pred             CCCCCCeeeccCCCCchhhHHhhhc-CCCCcEEECCCCCC-ChhHHHHhhcCCCccEEEccCCCCchHHHHHhhCCCCCC
Q 012186          202 GLQKLTLLNLEGCPVTAACLDSLSA-LGSLFYLNLNRCQL-SDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLE  279 (469)
Q Consensus       202 ~l~~L~~L~l~~~~~~~~~~~~~~~-~~~L~~L~l~~~~~-~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~  279 (469)
                      ...-..-..+...++.......+.. ...+.+--...+.. .......|..+++|+.+++++|.++.....+|.....++
T Consensus       222 garc~~p~rl~~~Ri~q~~a~kf~c~~esl~s~~~~~d~~d~~cP~~cf~~L~~L~~lnlsnN~i~~i~~~aFe~~a~l~  301 (498)
T KOG4237|consen  222 GARCVSPYRLYYKRINQEDARKFLCSLESLPSRLSSEDFPDSICPAKCFKKLPNLRKLNLSNNKITRIEDGAFEGAAELQ  301 (498)
T ss_pred             cceecchHHHHHHHhcccchhhhhhhHHhHHHhhccccCcCCcChHHHHhhcccceEeccCCCccchhhhhhhcchhhhh
Confidence            2222222222222221111111111 11111111111111 111224467788888888888888877777888888888


Q ss_pred             EEecCCCCCChHHHHHhhCCCCCCEEeccCCCCChhhHHHhhCCCCCcEEecccCCCC-----chHHHhhh--------C
Q 012186          280 SLNLDSCGIGDEGLVNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSFTGIS-----DGSLRKLA--------G  346 (469)
Q Consensus       280 ~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~-----~~~~~~~~--------~  346 (469)
                      .|.+..|.+.......|..+..|+.|++++|+++...+..|.....|..|.+-.|.+.     .+..+++.        .
T Consensus       302 eL~L~~N~l~~v~~~~f~~ls~L~tL~L~~N~it~~~~~aF~~~~~l~~l~l~~Np~~CnC~l~wl~~Wlr~~~~~~~~~  381 (498)
T KOG4237|consen  302 ELYLTRNKLEFVSSGMFQGLSGLKTLSLYDNQITTVAPGAFQTLFSLSTLNLLSNPFNCNCRLAWLGEWLRKKSVVGNPR  381 (498)
T ss_pred             hhhcCcchHHHHHHHhhhccccceeeeecCCeeEEEecccccccceeeeeehccCcccCccchHHHHHHHhhCCCCCCCC
Confidence            8888888776666666777888888888888888777777777777777777654321     11122221        1


Q ss_pred             C---CCCcEEEccCCCCCHH---HHHHHh---------cCCCCCEeecCCCCCChhHHHHhHcCCCCCeeeeCCCCCCHH
Q 012186          347 L---SSLKSLNLDARQITDT---GLAALT---------SLTGLTHLDLFGARITDSGAAYLRNFKNLRSLEICGGGLTDA  411 (469)
Q Consensus       347 ~---~~L~~L~l~~~~~~~~---~~~~l~---------~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~  411 (469)
                      |   ..++.+.++...+.+.   .+....         .++.+.++.=..|+.....|..+  ...-.++.+.+|.++.+
T Consensus       382 Cq~p~~~~~~~~~dv~~~~~~c~~~ee~~~~~s~~cP~~c~c~~tVvRcSnk~lk~lp~~i--P~d~telyl~gn~~~~v  459 (498)
T KOG4237|consen  382 CQSPGFVRQIPISDVAFGDFRCGGPEELGCLTSSPCPPPCTCLDTVVRCSNKLLKLLPRGI--PVDVTELYLDGNAITSV  459 (498)
T ss_pred             CCCCchhccccchhccccccccCCccccCCCCCCCCCCCcchhhhhHhhcccchhhcCCCC--CchhHHHhcccchhccc
Confidence            1   1344444443222211   111110         11222222111112222122111  23445677888887776


Q ss_pred             HHHHHhcCCCCCeeeccCCCCCChhHHHHHHhCcccccccccCC
Q 012186          412 GVKHIKDLSSLTLLNLSQNCNLTDKTLELISGLTGLVSLNVSNS  455 (469)
Q Consensus       412 ~~~~l~~~~~L~~L~l~~~~~l~~~~~~~l~~l~~L~~L~l~~~  455 (469)
                      ..+   .+.+| .+++++| .+.......|..+.+|..|-|++|
T Consensus       460 p~~---~~~~l-~~dls~n-~i~~Lsn~tf~n~tql~tlilsyn  498 (498)
T KOG4237|consen  460 PDE---LLRSL-LLDLSNN-RISSLSNYTFSNMTQLSTLILSYN  498 (498)
T ss_pred             CHH---HHhhh-hcccccC-ceehhhcccccchhhhheeEEecC
Confidence            443   34566 7888888 566656566777777777777654

>KOG4237 consensus Extracellular matrix protein slit, contains leucine-rich and EGF-like repeats [Extracellular structures; Signal transduction mechanisms]

Probab=99.79  E-value=5.6e-21  Score=165.23  Aligned_cols=130  Identities=23%  Similarity=0.255  Sum_probs=75.3

Q ss_pred             CCCEEEecccccChhhhhhccCCCCCCeeeccCCCCchhhHHhhhcCCCCcEEECCC-CCCChhHHHHhhcCCCccEEEc
Q 012186          181 NLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACLDSLSALGSLFYLNLNR-CQLSDDGCEKFSKIGSLKVLNL  259 (469)
Q Consensus       181 ~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~-~~~~~~~~~~~~~~~~L~~L~l  259 (469)
                      .-..+++..|.++..+...|..+++|+.|++++|.++.+.+.+|.+++++.+|-+.+ |+++......|..+..++.|.+
T Consensus        68 ~tveirLdqN~I~~iP~~aF~~l~~LRrLdLS~N~Is~I~p~AF~GL~~l~~Lvlyg~NkI~~l~k~~F~gL~slqrLll  147 (498)
T KOG4237|consen   68 ETVEIRLDQNQISSIPPGAFKTLHRLRRLDLSKNNISFIAPDAFKGLASLLSLVLYGNNKITDLPKGAFGGLSSLQRLLL  147 (498)
T ss_pred             cceEEEeccCCcccCChhhccchhhhceecccccchhhcChHhhhhhHhhhHHHhhcCCchhhhhhhHhhhHHHHHHHhc
Confidence            344556666666666666666666666666666666666666666666666555544 5565555556666666666666


Q ss_pred             cCCCCchHHHHHhhCCCCCCEEecCCCCCChHHHHHhhCCCCCCEEeccCC
Q 012186          260 GFNEITDECLVHLKGLTNLESLNLDSCGIGDEGLVNLTGLCNLKCLELSDT  310 (469)
Q Consensus       260 ~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~  310 (469)
                      .-+.+.-.....+..++++..|.+..|.+....-.++..+..++.+.+..+
T Consensus       148 Nan~i~Cir~~al~dL~~l~lLslyDn~~q~i~~~tf~~l~~i~tlhlA~n  198 (498)
T KOG4237|consen  148 NANHINCIRQDALRDLPSLSLLSLYDNKIQSICKGTFQGLAAIKTLHLAQN  198 (498)
T ss_pred             ChhhhcchhHHHHHHhhhcchhcccchhhhhhccccccchhccchHhhhcC
Confidence            655555555555666666666666555443332233444455555555444

>PRK15387 E3 ubiquitin-protein ligase SspH2; Provisional

Probab=99.67  E-value=3.1e-16  Score=154.04  Aligned_cols=266  Identities=21%  Similarity=0.113  Sum_probs=167.1

Q ss_pred             CCCCEEecccccccccccccccCCCCccEEEccCCCCCChhhhhcccCCCCCCEEEecccccChhhhhhccCCCCCCeee
Q 012186          131 INLVKLDLERCTRIHGGLVNLKGLMKLESLNIKWCNCITDSDMKPLSGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLN  210 (469)
Q Consensus       131 ~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~  210 (469)
                      .+-..|+++.+ .+...|..+.  ++|+.|++.++. ++.. +.   ..++|++|++++|.++..+ .   ..++|+.|+
T Consensus       201 ~~~~~LdLs~~-~LtsLP~~l~--~~L~~L~L~~N~-Lt~L-P~---lp~~Lk~LdLs~N~LtsLP-~---lp~sL~~L~  268 (788)
T PRK15387        201 NGNAVLNVGES-GLTTLPDCLP--AHITTLVIPDNN-LTSL-PA---LPPELRTLEVSGNQLTSLP-V---LPPGLLELS  268 (788)
T ss_pred             CCCcEEEcCCC-CCCcCCcchh--cCCCEEEccCCc-CCCC-CC---CCCCCcEEEecCCccCccc-C---cccccceee
Confidence            45667777776 3445555443  478888887743 4322 11   2577888888888777542 1   245778888


Q ss_pred             ccCCCCchhhHHhhhcCCCCcEEECCCCCCChhHHHHhhcCCCccEEEccCCCCchHHHHHhhCCCCCCEEecCCCCCCh
Q 012186          211 LEGCPVTAACLDSLSALGSLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNLDSCGIGD  290 (469)
Q Consensus       211 l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~  290 (469)
                      +.+|.+... +.   ...+|+.|++.+|.+.... .   .+++|+.|++++|.+... +.   ...+|+.|.+++|.+..
T Consensus       269 Ls~N~L~~L-p~---lp~~L~~L~Ls~N~Lt~LP-~---~p~~L~~LdLS~N~L~~L-p~---lp~~L~~L~Ls~N~L~~  336 (788)
T PRK15387        269 IFSNPLTHL-PA---LPSGLCKLWIFGNQLTSLP-V---LPPGLQELSVSDNQLASL-PA---LPSELCKLWAYNNQLTS  336 (788)
T ss_pred             ccCCchhhh-hh---chhhcCEEECcCCcccccc-c---cccccceeECCCCccccC-CC---CcccccccccccCcccc
Confidence            888776543 22   1256778888887776432 1   246788888888877642 21   12357777777777653


Q ss_pred             HHHHHhhCCCCCCEEeccCCCCChhhHHHhhCCCCCcEEecccCCCCchHHHhhhCCCCCcEEEccCCCCCHHHHHHHhc
Q 012186          291 EGLVNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISDGSLRKLAGLSSLKSLNLDARQITDTGLAALTS  370 (469)
Q Consensus       291 ~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~  370 (469)
                      .+  .  -.++|+.|++++|.+.....    ..++|+.|.+++|.+... +..   ..+|+.|++++|+++..+.    .
T Consensus       337 LP--~--lp~~Lq~LdLS~N~Ls~LP~----lp~~L~~L~Ls~N~L~~L-P~l---~~~L~~LdLs~N~Lt~LP~----l  400 (788)
T PRK15387        337 LP--T--LPSGLQELSVSDNQLASLPT----LPSELYKLWAYNNRLTSL-PAL---PSGLKELIVSGNRLTSLPV----L  400 (788)
T ss_pred             cc--c--cccccceEecCCCccCCCCC----CCcccceehhhccccccC-ccc---ccccceEEecCCcccCCCC----c
Confidence            22  1  12467888888887665321    235677777777776642 211   2467888888877775321    2


Q ss_pred             CCCCCEeecCCCCCChhHHHHhHcCCCCCeeeeCCCCCCHHHHHHHhcCCCCCeeeccCCCCCChhHHHHHH
Q 012186          371 LTGLTHLDLFGARITDSGAAYLRNFKNLRSLEICGGGLTDAGVKHIKDLSSLTLLNLSQNCNLTDKTLELIS  442 (469)
Q Consensus       371 ~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~l~~~~~~~l~  442 (469)
                      .++|+.|++++|.++.. |..   ..+|+.|++++|+++.. |..+..+++|+.|++++| .++...+..+.
T Consensus       401 ~s~L~~LdLS~N~LssI-P~l---~~~L~~L~Ls~NqLt~L-P~sl~~L~~L~~LdLs~N-~Ls~~~~~~L~  466 (788)
T PRK15387        401 PSELKELMVSGNRLTSL-PML---PSGLLSLSVYRNQLTRL-PESLIHLSSETTVNLEGN-PLSERTLQALR  466 (788)
T ss_pred             ccCCCEEEccCCcCCCC-Ccc---hhhhhhhhhccCccccc-ChHHhhccCCCeEECCCC-CCCchHHHHHH
Confidence            35778888888877763 322   34667778888877754 666777788888888888 67766666553

>PRK15387 E3 ubiquitin-protein ligase SspH2; Provisional

Probab=99.66  E-value=1.3e-15  Score=149.68  Aligned_cols=264  Identities=16%  Similarity=0.064  Sum_probs=129.7

Q ss_pred             CCCEEeCCCCCcCcHHHHHHHhCCCCCCEEecccccccccccccccCCCCccEEEccCCCCCChhhhhcccCCCCCCEEE
Q 012186          107 NLTSLSFRRNNAITAQGMKAFAGLINLVKLDLERCTRIHGGLVNLKGLMKLESLNIKWCNCITDSDMKPLSGLTNLKSLQ  186 (469)
Q Consensus       107 ~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~  186 (469)
                      .-..|+++++.+ . .+|..+.  ++|+.|.+..|. +...+.   ..++|++|++++|. ++.. +.   ..++|+.|+
T Consensus       202 ~~~~LdLs~~~L-t-sLP~~l~--~~L~~L~L~~N~-Lt~LP~---lp~~Lk~LdLs~N~-LtsL-P~---lp~sL~~L~  268 (788)
T PRK15387        202 GNAVLNVGESGL-T-TLPDCLP--AHITTLVIPDNN-LTSLPA---LPPELRTLEVSGNQ-LTSL-PV---LPPGLLELS  268 (788)
T ss_pred             CCcEEEcCCCCC-C-cCCcchh--cCCCEEEccCCc-CCCCCC---CCCCCcEEEecCCc-cCcc-cC---cccccceee
Confidence            445566666543 2 2344333  256666666542 333221   23566666666532 3321 11   134566666


Q ss_pred             ecccccChhhhhhccCCCCCCeeeccCCCCchhhHHhhhcCCCCcEEECCCCCCChhHHHHhhcCCCccEEEccCCCCch
Q 012186          187 ISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACLDSLSALGSLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITD  266 (469)
Q Consensus       187 l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~  266 (469)
                      +.+|.+...+.    ..++|+.|++++|.++.. |.   ..++|+.|++++|++.... .   ...+|+.|++++|.++.
T Consensus       269 Ls~N~L~~Lp~----lp~~L~~L~Ls~N~Lt~L-P~---~p~~L~~LdLS~N~L~~Lp-~---lp~~L~~L~Ls~N~L~~  336 (788)
T PRK15387        269 IFSNPLTHLPA----LPSGLCKLWIFGNQLTSL-PV---LPPGLQELSVSDNQLASLP-A---LPSELCKLWAYNNQLTS  336 (788)
T ss_pred             ccCCchhhhhh----chhhcCEEECcCCccccc-cc---cccccceeECCCCccccCC-C---CcccccccccccCcccc
Confidence            66665543221    123455666666655543 21   1345666666666554321 1   12345556666665543


Q ss_pred             HHHHHhhCCCCCCEEecCCCCCChHHHHHhhCCCCCCEEeccCCCCChhhHHHhhCCCCCcEEecccCCCCchHHHhhhC
Q 012186          267 ECLVHLKGLTNLESLNLDSCGIGDEGLVNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISDGSLRKLAG  346 (469)
Q Consensus       267 ~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~  346 (469)
                       .+.   ...+|+.|++++|.+...+.    ..++|+.|++.+|.+.... .   ..++|+.|++++|.+.... .   .
T Consensus       337 -LP~---lp~~Lq~LdLS~N~Ls~LP~----lp~~L~~L~Ls~N~L~~LP-~---l~~~L~~LdLs~N~Lt~LP-~---l  400 (788)
T PRK15387        337 -LPT---LPSGLQELSVSDNQLASLPT----LPSELYKLWAYNNRLTSLP-A---LPSGLKELIVSGNRLTSLP-V---L  400 (788)
T ss_pred             -ccc---cccccceEecCCCccCCCCC----CCcccceehhhccccccCc-c---cccccceEEecCCcccCCC-C---c
Confidence             111   11356666666665543211    1235556666666554321 1   1245666666666554321 1   1


Q ss_pred             CCCCcEEEccCCCCCHHHHHHHhcCCCCCEeecCCCCCChhHHHHhHcCCCCCeeeeCCCCCCHHHHHHH
Q 012186          347 LSSLKSLNLDARQITDTGLAALTSLTGLTHLDLFGARITDSGAAYLRNFKNLRSLEICGGGLTDAGVKHI  416 (469)
Q Consensus       347 ~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l  416 (469)
                      .++|+.|++++|.++..+.    ...+|+.|++++|+++. +|..+..++.|+.|++++|.+++..+..+
T Consensus       401 ~s~L~~LdLS~N~LssIP~----l~~~L~~L~Ls~NqLt~-LP~sl~~L~~L~~LdLs~N~Ls~~~~~~L  465 (788)
T PRK15387        401 PSELKELMVSGNRLTSLPM----LPSGLLSLSVYRNQLTR-LPESLIHLSSETTVNLEGNPLSERTLQAL  465 (788)
T ss_pred             ccCCCEEEccCCcCCCCCc----chhhhhhhhhccCcccc-cChHHhhccCCCeEECCCCCCCchHHHHH
Confidence            2456666666666654321    12345566666666654 35555566666666666666665555444

>PRK15370 E3 ubiquitin-protein ligase SlrP; Provisional

Probab=99.58  E-value=7e-15  Score=145.45  Aligned_cols=244  Identities=15%  Similarity=0.135  Sum_probs=112.5

Q ss_pred             CccEEEccCCCCCChhhhhcccCCCCCCEEEecccccChhhhhhccCCCCCCeeeccCCCCchhhHHhhhcCCCCcEEEC
Q 012186          156 KLESLNIKWCNCITDSDMKPLSGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACLDSLSALGSLFYLNL  235 (469)
Q Consensus       156 ~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l  235 (469)
                      +...|++++.. ++. .+..+  .++|+.|++++|.++..+...   .++|++|++++|.+... |..+.  ++|+.|++
T Consensus       179 ~~~~L~L~~~~-Lts-LP~~I--p~~L~~L~Ls~N~LtsLP~~l---~~nL~~L~Ls~N~LtsL-P~~l~--~~L~~L~L  248 (754)
T PRK15370        179 NKTELRLKILG-LTT-IPACI--PEQITTLILDNNELKSLPENL---QGNIKTLYANSNQLTSI-PATLP--DTIQEMEL  248 (754)
T ss_pred             CceEEEeCCCC-cCc-CCccc--ccCCcEEEecCCCCCcCChhh---ccCCCEEECCCCccccC-Chhhh--ccccEEEC
Confidence            45566666532 222 12222  245667777766666433222   23666677766665543 22222  35666666


Q ss_pred             CCCCCChhHHHHhhcCCCccEEEccCCCCchHHHHHhhCCCCCCEEecCCCCCChHHHHHhhCCCCCCEEeccCCCCChh
Q 012186          236 NRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNLDSCGIGDEGLVNLTGLCNLKCLELSDTQVGSS  315 (469)
Q Consensus       236 ~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~  315 (469)
                      ++|.+.. .+..+.  .+|+.|++++|.+.. .+..+.  ++|+.|++++|.+...+ ..+  .++|+.|++.+|.+...
T Consensus       249 s~N~L~~-LP~~l~--s~L~~L~Ls~N~L~~-LP~~l~--~sL~~L~Ls~N~Lt~LP-~~l--p~sL~~L~Ls~N~Lt~L  319 (754)
T PRK15370        249 SINRITE-LPERLP--SALQSLDLFHNKISC-LPENLP--EELRYLSVYDNSIRTLP-AHL--PSGITHLNVQSNSLTAL  319 (754)
T ss_pred             cCCccCc-CChhHh--CCCCEEECcCCccCc-cccccC--CCCcEEECCCCccccCc-ccc--hhhHHHHHhcCCccccC
Confidence            6666553 222222  356666666666553 232221  35666666666554321 111  12455555555544432


Q ss_pred             hHHHhhCCCCCcEEecccCCCCchHHHhhhCCCCCcEEEccCCCCCHHHHHHHhcCCCCCEeecCCCCCChhHHHHhHcC
Q 012186          316 GLRHLSGLTNLESINLSFTGISDGSLRKLAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLFGARITDSGAAYLRNF  395 (469)
Q Consensus       316 ~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~  395 (469)
                      .. .  ..++|+.|.+++|.++.. +..+.  ++|+.|++++|+++.. +..+  .++|+.|++++|.++..+ ..+.  
T Consensus       320 P~-~--l~~sL~~L~Ls~N~Lt~L-P~~l~--~sL~~L~Ls~N~L~~L-P~~l--p~~L~~LdLs~N~Lt~LP-~~l~--  387 (754)
T PRK15370        320 PE-T--LPPGLKTLEAGENALTSL-PASLP--PELQVLDVSKNQITVL-PETL--PPTITTLDVSRNALTNLP-ENLP--  387 (754)
T ss_pred             Cc-c--ccccceeccccCCccccC-Chhhc--CcccEEECCCCCCCcC-Chhh--cCCcCEEECCCCcCCCCC-HhHH--
Confidence            11 1  124555555555554432 22221  4555555555555432 1122  235555555555555432 2221  


Q ss_pred             CCCCeeeeCCCCCCHH---HHHHHhcCCCCCeeeccCC
Q 012186          396 KNLRSLEICGGGLTDA---GVKHIKDLSSLTLLNLSQN  430 (469)
Q Consensus       396 ~~L~~L~l~~~~~~~~---~~~~l~~~~~L~~L~l~~~  430 (469)
                      ..|+.|++++|+++..   .|.....++.+..|++.+|
T Consensus       388 ~sL~~LdLs~N~L~~LP~sl~~~~~~~~~l~~L~L~~N  425 (754)
T PRK15370        388 AALQIMQASRNNLVRLPESLPHFRGEGPQPTRIIVEYN  425 (754)
T ss_pred             HHHHHHhhccCCcccCchhHHHHhhcCCCccEEEeeCC
Confidence            2355555555554432   1112223345555555555

>KOG1909 consensus Ran GTPase-activating protein [RNA processing and modification; Nuclear structure; Signal transduction mechanisms]

Probab=99.56  E-value=5.9e-14  Score=120.44  Aligned_cols=257  Identities=23%  Similarity=0.300  Sum_probs=130.2

Q ss_pred             hhhccCCCCCCeeeccCCCCchhhH----HhhhcCCCCcEEECCCC---CCChhHH-------HHhhcCCCccEEEccCC
Q 012186          197 IAYLKGLQKLTLLNLEGCPVTAACL----DSLSALGSLFYLNLNRC---QLSDDGC-------EKFSKIGSLKVLNLGFN  262 (469)
Q Consensus       197 ~~~l~~l~~L~~L~l~~~~~~~~~~----~~~~~~~~L~~L~l~~~---~~~~~~~-------~~~~~~~~L~~L~l~~~  262 (469)
                      ...+.....+++++++||.+...-.    ..+.+.++|+..++++-   ....+.+       ..+..+|+|+.++++.|
T Consensus        23 ~~~~~~~~s~~~l~lsgnt~G~EAa~~i~~~L~~~~~L~~v~~sd~ftGR~~~Ei~e~L~~l~~aL~~~~~L~~ldLSDN  102 (382)
T KOG1909|consen   23 EEELEPMDSLTKLDLSGNTFGTEAARAIAKVLASKKELREVNLSDMFTGRLKDEIPEALKMLSKALLGCPKLQKLDLSDN  102 (382)
T ss_pred             HHHhcccCceEEEeccCCchhHHHHHHHHHHHhhcccceeeehHhhhcCCcHHHHHHHHHHHHHHHhcCCceeEeecccc
Confidence            3455667778888888887755322    33445667777766542   1222222       22344567777777777


Q ss_pred             CCchHHHH----HhhCCCCCCEEecCCCCCChHHHHHhhCCCCCCEEeccCCCCChhhHHHhhCCCCCcEEecccCCCCc
Q 012186          263 EITDECLV----HLKGLTNLESLNLDSCGIGDEGLVNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISD  338 (469)
Q Consensus       263 ~~~~~~~~----~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~  338 (469)
                      .+....+.    .+.++..|++|.+.+|+++......++.  .|..+.         .....+..+.|+++...+|++.+
T Consensus       103 A~G~~g~~~l~~ll~s~~~L~eL~L~N~Glg~~ag~~l~~--al~~l~---------~~kk~~~~~~Lrv~i~~rNrlen  171 (382)
T KOG1909|consen  103 AFGPKGIRGLEELLSSCTDLEELYLNNCGLGPEAGGRLGR--ALFELA---------VNKKAASKPKLRVFICGRNRLEN  171 (382)
T ss_pred             ccCccchHHHHHHHHhccCHHHHhhhcCCCChhHHHHHHH--HHHHHH---------HHhccCCCcceEEEEeecccccc
Confidence            65543322    2355667777777777665443333221  000000         00112234555555555555444


Q ss_pred             hHHH----hhhCCCCCcEEEccCCCCCHHHH----HHHhcCCCCCEeecCCCCCChhHHH----HhHcCCCCCeeeeCCC
Q 012186          339 GSLR----KLAGLSSLKSLNLDARQITDTGL----AALTSLTGLTHLDLFGARITDSGAA----YLRNFKNLRSLEICGG  406 (469)
Q Consensus       339 ~~~~----~~~~~~~L~~L~l~~~~~~~~~~----~~l~~~~~L~~L~l~~~~~~~~~~~----~~~~~~~L~~L~l~~~  406 (469)
                      .+..    .+...+.|+.+.+..|.+...+.    ..+..|++|+.|++..|-++.....    .+..++.|+++++++|
T Consensus       172 ~ga~~~A~~~~~~~~leevr~~qN~I~~eG~~al~eal~~~~~LevLdl~DNtft~egs~~LakaL~s~~~L~El~l~dc  251 (382)
T KOG1909|consen  172 GGATALAEAFQSHPTLEEVRLSQNGIRPEGVTALAEALEHCPHLEVLDLRDNTFTLEGSVALAKALSSWPHLRELNLGDC  251 (382)
T ss_pred             ccHHHHHHHHHhccccceEEEecccccCchhHHHHHHHHhCCcceeeecccchhhhHHHHHHHHHhcccchheeeccccc
Confidence            3322    22334555666555555543322    3344566666666666555443322    2344556666666666


Q ss_pred             CCCHHHHHHH-----hcCCCCCeeeccCCCCCChhHHH----HHHhCcccccccccCCCC--CHHHHHhh
Q 012186          407 GLTDAGVKHI-----KDLSSLTLLNLSQNCNLTDKTLE----LISGLTGLVSLNVSNSRI--TSAGLRHL  465 (469)
Q Consensus       407 ~~~~~~~~~l-----~~~~~L~~L~l~~~~~l~~~~~~----~l~~l~~L~~L~l~~~~~--~~~~~~~l  465 (469)
                      .+...+...+     ...|+|+.|.+.+| .++.....    .+...|.|+.|+|++|.+  .+.++..+
T Consensus       252 ll~~~Ga~a~~~al~~~~p~L~vl~l~gN-eIt~da~~~la~~~~ek~dL~kLnLngN~l~e~de~i~ei  320 (382)
T KOG1909|consen  252 LLENEGAIAFVDALKESAPSLEVLELAGN-EITRDAALALAACMAEKPDLEKLNLNGNRLGEKDEGIDEI  320 (382)
T ss_pred             ccccccHHHHHHHHhccCCCCceeccCcc-hhHHHHHHHHHHHHhcchhhHHhcCCcccccccchhHHHH
Confidence            5554433333     23566666666666 44443322    223456666666666666  44554444

>KOG1909 consensus Ran GTPase-activating protein [RNA processing and modification; Nuclear structure; Signal transduction mechanisms]

Probab=99.55  E-value=1.1e-13  Score=118.83  Aligned_cols=236  Identities=20%  Similarity=0.230  Sum_probs=145.2

Q ss_pred             hhcccCCCCCCEEEecccccChhh----hhhccCCCCCCeeeccCCC---Cchhh-------HHhhhcCCCCcEEECCCC
Q 012186          173 MKPLSGLTNLKSLQISCSKVTDSG----IAYLKGLQKLTLLNLEGCP---VTAAC-------LDSLSALGSLFYLNLNRC  238 (469)
Q Consensus       173 ~~~~~~~~~L~~L~l~~~~~~~~~----~~~l~~l~~L~~L~l~~~~---~~~~~-------~~~~~~~~~L~~L~l~~~  238 (469)
                      ...+..+..++.+++++|.+....    ...+.+.++|+..++++-.   .....       ..++..+|+|+++++++|
T Consensus        23 ~~~~~~~~s~~~l~lsgnt~G~EAa~~i~~~L~~~~~L~~v~~sd~ftGR~~~Ei~e~L~~l~~aL~~~~~L~~ldLSDN  102 (382)
T KOG1909|consen   23 EEELEPMDSLTKLDLSGNTFGTEAARAIAKVLASKKELREVNLSDMFTGRLKDEIPEALKMLSKALLGCPKLQKLDLSDN  102 (382)
T ss_pred             HHHhcccCceEEEeccCCchhHHHHHHHHHHHhhcccceeeehHhhhcCCcHHHHHHHHHHHHHHHhcCCceeEeecccc
Confidence            344557889999999999887543    3456778899999988642   22222       235567889999999999


Q ss_pred             CCChhHHHHh----hcCCCccEEEccCCCCchHHHHHh-------------hCCCCCCEEecCCCCCChHHH----HHhh
Q 012186          239 QLSDDGCEKF----SKIGSLKVLNLGFNEITDECLVHL-------------KGLTNLESLNLDSCGIGDEGL----VNLT  297 (469)
Q Consensus       239 ~~~~~~~~~~----~~~~~L~~L~l~~~~~~~~~~~~~-------------~~l~~L~~L~l~~~~~~~~~~----~~~~  297 (469)
                      .+....+..|    .++..|+.|.+.+|.+.......+             ..-+.|+.+...+|.+.+.+.    ..+.
T Consensus       103 A~G~~g~~~l~~ll~s~~~L~eL~L~N~Glg~~ag~~l~~al~~l~~~kk~~~~~~Lrv~i~~rNrlen~ga~~~A~~~~  182 (382)
T KOG1909|consen  103 AFGPKGIRGLEELLSSCTDLEELYLNNCGLGPEAGGRLGRALFELAVNKKAASKPKLRVFICGRNRLENGGATALAEAFQ  182 (382)
T ss_pred             ccCccchHHHHHHHHhccCHHHHhhhcCCCChhHHHHHHHHHHHHHHHhccCCCcceEEEEeeccccccccHHHHHHHHH
Confidence            9877665544    678999999999998864332222             334677777777776654332    2345


Q ss_pred             CCCCCCEEeccCCCCChhhH----HHhhCCCCCcEEecccCCCCchHHH----hhhCCCCCcEEEccCCCCCHHHHHHHh
Q 012186          298 GLCNLKCLELSDTQVGSSGL----RHLSGLTNLESINLSFTGISDGSLR----KLAGLSSLKSLNLDARQITDTGLAALT  369 (469)
Q Consensus       298 ~~~~L~~L~l~~~~~~~~~~----~~~~~~~~L~~L~l~~~~~~~~~~~----~~~~~~~L~~L~l~~~~~~~~~~~~l~  369 (469)
                      ..+.|+.+.+..|.+.....    ..+..+++|+.|++.+|.++.....    .++.+++|+.+.+++|.+...+...+.
T Consensus       183 ~~~~leevr~~qN~I~~eG~~al~eal~~~~~LevLdl~DNtft~egs~~LakaL~s~~~L~El~l~dcll~~~Ga~a~~  262 (382)
T KOG1909|consen  183 SHPTLEEVRLSQNGIRPEGVTALAEALEHCPHLEVLDLRDNTFTLEGSVALAKALSSWPHLRELNLGDCLLENEGAIAFV  262 (382)
T ss_pred             hccccceEEEecccccCchhHHHHHHHHhCCcceeeecccchhhhHHHHHHHHHhcccchheeecccccccccccHHHHH
Confidence            56677777777765544333    2344666666666666665544333    233455666666666665544333322


Q ss_pred             -----cCCCCCEeecCCCCCChhHHH----HhHcCCCCCeeeeCCCCC
Q 012186          370 -----SLTGLTHLDLFGARITDSGAA----YLRNFKNLRSLEICGGGL  408 (469)
Q Consensus       370 -----~~~~L~~L~l~~~~~~~~~~~----~~~~~~~L~~L~l~~~~~  408 (469)
                           ..|+|+.+.+.+|.++.....    .+...+.|..|++++|.+
T Consensus       263 ~al~~~~p~L~vl~l~gNeIt~da~~~la~~~~ek~dL~kLnLngN~l  310 (382)
T KOG1909|consen  263 DALKESAPSLEVLELAGNEITRDAALALAACMAEKPDLEKLNLNGNRL  310 (382)
T ss_pred             HHHhccCCCCceeccCcchhHHHHHHHHHHHHhcchhhHHhcCCcccc
Confidence                 345556666655555543222    223345555555555555

>PRK15370 E3 ubiquitin-protein ligase SlrP; Provisional

Probab=99.50  E-value=1.5e-13  Score=136.21  Aligned_cols=205  Identities=18%  Similarity=0.148  Sum_probs=79.8

Q ss_pred             CCCEEEecccccChhhhhhccCCCCCCeeeccCCCCchhhHHhhhcCCCCcEEECCCCCCChhHHHHhhcCCCccEEEcc
Q 012186          181 NLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACLDSLSALGSLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLG  260 (469)
Q Consensus       181 ~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~  260 (469)
                      +|+.|++++|.++..+. .+  .++|+.|++++|.+... |..+.  .+|+.|++++|.+.. .+..+  .++|+.|+++
T Consensus       221 nL~~L~Ls~N~LtsLP~-~l--~~~L~~L~Ls~N~L~~L-P~~l~--s~L~~L~Ls~N~L~~-LP~~l--~~sL~~L~Ls  291 (754)
T PRK15370        221 NIKTLYANSNQLTSIPA-TL--PDTIQEMELSINRITEL-PERLP--SALQSLDLFHNKISC-LPENL--PEELRYLSVY  291 (754)
T ss_pred             CCCEEECCCCccccCCh-hh--hccccEEECcCCccCcC-ChhHh--CCCCEEECcCCccCc-ccccc--CCCCcEEECC
Confidence            45555555444443211 11  12345555555544432 22221  245555555444432 12211  1345555555


Q ss_pred             CCCCchHHHHHhhCCCCCCEEecCCCCCChHHHHHhhCCCCCCEEeccCCCCChhhHHHhhCCCCCcEEecccCCCCchH
Q 012186          261 FNEITDECLVHLKGLTNLESLNLDSCGIGDEGLVNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISDGS  340 (469)
Q Consensus       261 ~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~  340 (469)
                      +|.++.. +..+.  ++|+.|++++|.+...+ ..  -.++|+.|++.+|.+.... ..+  +++|+.|++++|.+... 
T Consensus       292 ~N~Lt~L-P~~lp--~sL~~L~Ls~N~Lt~LP-~~--l~~sL~~L~Ls~N~Lt~LP-~~l--~~sL~~L~Ls~N~L~~L-  361 (754)
T PRK15370        292 DNSIRTL-PAHLP--SGITHLNVQSNSLTALP-ET--LPPGLKTLEAGENALTSLP-ASL--PPELQVLDVSKNQITVL-  361 (754)
T ss_pred             CCccccC-cccch--hhHHHHHhcCCccccCC-cc--ccccceeccccCCccccCC-hhh--cCcccEEECCCCCCCcC-
Confidence            5444421 11111  23444445444443211 11  1134455555554443321 111  23455555555544321 


Q ss_pred             HHhhhCCCCCcEEEccCCCCCHHHHHHHhcCCCCCEeecCCCCCChh---HHHHhHcCCCCCeeeeCCCCCC
Q 012186          341 LRKLAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLFGARITDS---GAAYLRNFKNLRSLEICGGGLT  409 (469)
Q Consensus       341 ~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~---~~~~~~~~~~L~~L~l~~~~~~  409 (469)
                      +..+.  ++|+.|++++|.++..+. .+.  ..|+.|++++|++...   ++.....++.+..|++.+|.+.
T Consensus       362 P~~lp--~~L~~LdLs~N~Lt~LP~-~l~--~sL~~LdLs~N~L~~LP~sl~~~~~~~~~l~~L~L~~Npls  428 (754)
T PRK15370        362 PETLP--PTITTLDVSRNALTNLPE-NLP--AALQIMQASRNNLVRLPESLPHFRGEGPQPTRIIVEYNPFS  428 (754)
T ss_pred             Chhhc--CCcCEEECCCCcCCCCCH-hHH--HHHHHHhhccCCcccCchhHHHHhhcCCCccEEEeeCCCcc
Confidence            12221  345555555554443321 111  1344455555544421   1112222344455555555444

>KOG4658 consensus Apoptotic ATPase [Signal transduction mechanisms]

Probab=99.49  E-value=1.5e-15  Score=152.55  Aligned_cols=208  Identities=19%  Similarity=0.156  Sum_probs=144.1

Q ss_pred             CcHHHHHHHHHHHHhccCCCHHhHH-hhccCceeEEecCCCCCCCH-----HHHHHH-----------HhcCCCccEEEe
Q 012186            2 LPRDISQQIFNELVYSRCLTEVSLE-AFRDCALQDLCLGQYPGVND-----KWMDVI-----------ASQGSSLLSVDL   64 (469)
Q Consensus         2 ~~~e~~~~~~~~lv~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~-----~~~~~~-----------~~~~~~l~~L~l   64 (469)
                      ..++.|..|+.+||++++++..... .+..|+|||+..+.+-....     .-....           ......+|.+.+
T Consensus       451 ~~~d~G~~~i~~LV~~~Ll~~~~~~~~~~~~kmHDvvRe~al~ias~~~~~~e~~iv~~~~~~~~~~~~~~~~~~rr~s~  530 (889)
T KOG4658|consen  451 TAEDVGYDYIEELVRASLLIEERDEGRKETVKMHDVVREMALWIASDFGKQEENQIVSDGVGLSEIPQVKSWNSVRRMSL  530 (889)
T ss_pred             chhcchHHHHHHHHHHHHHhhcccccceeEEEeeHHHHHHHHHHhccccccccceEEECCcCccccccccchhheeEEEE
Confidence            4578999999999999999988754 56678899886542211111     000000           012235677777


Q ss_pred             cCCCCChHhhHhhhcCCCCCEEecCCCcc-cChhHhHhhhCCCCCCEEeCCCCCcCcHHHHHHHhCCCCCCEEecccccc
Q 012186           65 SGSDVTDSGLIHLKDCSNLQSLDFNFCIQ-ISDGGLEHLRGLSNLTSLSFRRNNAITAQGMKAFAGLINLVKLDLERCTR  143 (469)
Q Consensus        65 ~~~~~~~~~~~~~~~~~~L~~L~l~~~~~-~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~  143 (469)
                      .++.+...  ..-..+++|++|-+..+.. +.......|..++.|++||+++|. .....|..++.+.+||+|++++. .
T Consensus       531 ~~~~~~~~--~~~~~~~~L~tLll~~n~~~l~~is~~ff~~m~~LrVLDLs~~~-~l~~LP~~I~~Li~LryL~L~~t-~  606 (889)
T KOG4658|consen  531 MNNKIEHI--AGSSENPKLRTLLLQRNSDWLLEISGEFFRSLPLLRVLDLSGNS-SLSKLPSSIGELVHLRYLDLSDT-G  606 (889)
T ss_pred             eccchhhc--cCCCCCCccceEEEeecchhhhhcCHHHHhhCcceEEEECCCCC-ccCcCChHHhhhhhhhcccccCC-C
Confidence            77665321  2224777899999987432 555556678899999999999876 34567999999999999999994 6


Q ss_pred             cccccccccCCCCccEEEccCCCCCChhhhhcccCCCCCCEEEecccc--cChhhhhhccCCCCCCeeeccCC
Q 012186          144 IHGGLVNLKGLMKLESLNIKWCNCITDSDMKPLSGLTNLKSLQISCSK--VTDSGIAYLKGLQKLTLLNLEGC  214 (469)
Q Consensus       144 ~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~--~~~~~~~~l~~l~~L~~L~l~~~  214 (469)
                      +...|..+++++.|.+|++..+...... +.....+++|++|.+....  .+......+..+.+|+.+.+...
T Consensus       607 I~~LP~~l~~Lk~L~~Lnl~~~~~l~~~-~~i~~~L~~Lr~L~l~~s~~~~~~~~l~el~~Le~L~~ls~~~~  678 (889)
T KOG4658|consen  607 ISHLPSGLGNLKKLIYLNLEVTGRLESI-PGILLELQSLRVLRLPRSALSNDKLLLKELENLEHLENLSITIS  678 (889)
T ss_pred             ccccchHHHHHHhhheeccccccccccc-cchhhhcccccEEEeeccccccchhhHHhhhcccchhhheeecc
Confidence            7788899999999999999886654433 4555568999999986543  33334455566667776666443

>KOG4341 consensus F-box protein containing LRR [General function prediction only]

Probab=99.46  E-value=2.2e-13  Score=119.65  Aligned_cols=359  Identities=24%  Similarity=0.352  Sum_probs=187.2

Q ss_pred             CCcHHHHHHHHHHHHhccCCCHHhHH-hhccCce-----eEEecCCCC-CCCHHHHHHHHh-cCCCccEEEecCCCC-Ch
Q 012186            1 MLPRDISQQIFNELVYSRCLTEVSLE-AFRDCAL-----QDLCLGQYP-GVNDKWMDVIAS-QGSSLLSVDLSGSDV-TD   71 (469)
Q Consensus         1 ~~~~e~~~~~~~~lv~~~~~~~~~~~-~~~~~~~-----~~l~~~~~~-~~~~~~~~~~~~-~~~~l~~L~l~~~~~-~~   71 (469)
                      .+|+|+.-.+|..|-....-+-...- .|..|++     +++.+-.++ ++.......+.. ...-+++|.+.+..- .+
T Consensus        74 ~LPpEl~lkvFS~LDtksl~r~a~~c~~~n~~AlD~~~~q~idL~t~~rDv~g~VV~~~~~Rcgg~lk~LSlrG~r~v~~  153 (483)
T KOG4341|consen   74 SLPPELLLKVFSMLDTKSLCRAAQCCTMWNKLALDGSCWQHIDLFTFQRDVDGGVVENMISRCGGFLKELSLRGCRAVGD  153 (483)
T ss_pred             cCCHHHHHHHHHHHhHHHHHHHHHHHHHhhhhhhccccceeeehhcchhcCCCcceehHhhhhccccccccccccccCCc
Confidence            37888888888877665555443322 2223322     222221111 222222222222 235788888887653 33


Q ss_pred             HhhHhh-hcCCCCCEEecCCCcccChhHhHhh-hCCCCCCEEeCCCCCcCcHHHHHHH-hCCCCCCEEecccccccccc-
Q 012186           72 SGLIHL-KDCSNLQSLDFNFCIQISDGGLEHL-RGLSNLTSLSFRRNNAITAQGMKAF-AGLINLVKLDLERCTRIHGG-  147 (469)
Q Consensus        72 ~~~~~~-~~~~~L~~L~l~~~~~~~~~~~~~l-~~~~~L~~L~l~~~~~~~~~~~~~~-~~l~~L~~L~l~~~~~~~~~-  147 (469)
                      .....+ ..||+++.|++.+|..+++.....+ ..|++|+++++..|..++......+ ..+++|++|+++.|+.+.+. 
T Consensus       154 sslrt~~~~CpnIehL~l~gc~~iTd~s~~sla~~C~~l~~l~L~~c~~iT~~~Lk~la~gC~kL~~lNlSwc~qi~~~g  233 (483)
T KOG4341|consen  154 SSLRTFASNCPNIEHLALYGCKKITDSSLLSLARYCRKLRHLNLHSCSSITDVSLKYLAEGCRKLKYLNLSWCPQISGNG  233 (483)
T ss_pred             chhhHHhhhCCchhhhhhhcceeccHHHHHHHHHhcchhhhhhhcccchhHHHHHHHHHHhhhhHHHhhhccCchhhcCc
Confidence            333333 6889999999999888888877777 4688999999998877666666544 46889999999888766652 


Q ss_pred             c-ccccCCCCccEEEccCCCCCChhhhhcc-cCCCCCCEEEeccc-ccChhhhhhc-cCCCCCCeeeccCC-CCchhhHH
Q 012186          148 L-VNLKGLMKLESLNIKWCNCITDSDMKPL-SGLTNLKSLQISCS-KVTDSGIAYL-KGLQKLTLLNLEGC-PVTAACLD  222 (469)
Q Consensus       148 ~-~~l~~l~~L~~L~l~~~~~~~~~~~~~~-~~~~~L~~L~l~~~-~~~~~~~~~l-~~l~~L~~L~l~~~-~~~~~~~~  222 (469)
                      . .-...+..++.+..+||........... ..++.+..+++..+ .+++.....+ ..+..|+.+..+++ .+......
T Consensus       234 v~~~~rG~~~l~~~~~kGC~e~~le~l~~~~~~~~~i~~lnl~~c~~lTD~~~~~i~~~c~~lq~l~~s~~t~~~d~~l~  313 (483)
T KOG4341|consen  234 VQALQRGCKELEKLSLKGCLELELEALLKAAAYCLEILKLNLQHCNQLTDEDLWLIACGCHALQVLCYSSCTDITDEVLW  313 (483)
T ss_pred             chHHhccchhhhhhhhcccccccHHHHHHHhccChHhhccchhhhccccchHHHHHhhhhhHhhhhcccCCCCCchHHHH
Confidence            1 2234566677777777766554333222 24455555555444 3343322222 44566677766665 33332222


Q ss_pred             hhh-cCCCCcEEECCCCC-CChhHHHHh-hcCCCccEEEccCCCCchH--HHHHhhCCCCCCEEecCCCC-CChHHHHHh
Q 012186          223 SLS-ALGSLFYLNLNRCQ-LSDDGCEKF-SKIGSLKVLNLGFNEITDE--CLVHLKGLTNLESLNLDSCG-IGDEGLVNL  296 (469)
Q Consensus       223 ~~~-~~~~L~~L~l~~~~-~~~~~~~~~-~~~~~L~~L~l~~~~~~~~--~~~~~~~l~~L~~L~l~~~~-~~~~~~~~~  296 (469)
                      .++ ++++|+.+-+..++ +++.....+ .+.+.|+.+++..+.....  ....-.+++.|+.+.+++|. ++++....+
T Consensus       314 aLg~~~~~L~~l~l~~c~~fsd~~ft~l~rn~~~Le~l~~e~~~~~~d~tL~sls~~C~~lr~lslshce~itD~gi~~l  393 (483)
T KOG4341|consen  314 ALGQHCHNLQVLELSGCQQFSDRGFTMLGRNCPHLERLDLEECGLITDGTLASLSRNCPRLRVLSLSHCELITDEGIRHL  393 (483)
T ss_pred             HHhcCCCceEEEeccccchhhhhhhhhhhcCChhhhhhcccccceehhhhHhhhccCCchhccCChhhhhhhhhhhhhhh
Confidence            332 35666666665554 333222222 2344555555544432211  11111234455555555442 122211111


Q ss_pred             hCCCCCCEEeccCCCCChhhHHHhhCCCCCcEEecccCC-CCchHHHhhhCCCCCcEEEccCC-CCCHHHHHHHh-cCCC
Q 012186          297 TGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSFTG-ISDGSLRKLAGLSSLKSLNLDAR-QITDTGLAALT-SLTG  373 (469)
Q Consensus       297 ~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~-~~~~~~~~~~~~~~L~~L~l~~~-~~~~~~~~~l~-~~~~  373 (469)
                      ..                    .-.....|+.+.++++. +++.....+..+++|+.+++-++ +++......+. .+|+
T Consensus       394 ~~--------------------~~c~~~~l~~lEL~n~p~i~d~~Le~l~~c~~Leri~l~~~q~vtk~~i~~~~~~lp~  453 (483)
T KOG4341|consen  394 SS--------------------SSCSLEGLEVLELDNCPLITDATLEHLSICRNLERIELIDCQDVTKEAISRFATHLPN  453 (483)
T ss_pred             hh--------------------ccccccccceeeecCCCCchHHHHHHHhhCcccceeeeechhhhhhhhhHHHHhhCcc
Confidence            11                    00133455566666653 33444455556666666666553 33333333332 5566


Q ss_pred             CCEeec
Q 012186          374 LTHLDL  379 (469)
Q Consensus       374 L~~L~l  379 (469)
                      ++...+
T Consensus       454 i~v~a~  459 (483)
T KOG4341|consen  454 IKVHAY  459 (483)
T ss_pred             ceehhh
Confidence            555444

>KOG4341 consensus F-box protein containing LRR [General function prediction only]

Probab=99.38  E-value=3.5e-13  Score=118.38  Aligned_cols=301  Identities=30%  Similarity=0.438  Sum_probs=213.9

Q ss_pred             eeEEecCCCCCCCHHHHHHHHhcCCCccEEEecCC-CCChHhhHhh-hcCCCCCEEecCCCcccChhHhHhh-hCCCCCC
Q 012186           33 LQDLCLGQYPGVNDKWMDVIASQGSSLLSVDLSGS-DVTDSGLIHL-KDCSNLQSLDFNFCIQISDGGLEHL-RGLSNLT  109 (469)
Q Consensus        33 ~~~l~~~~~~~~~~~~~~~~~~~~~~l~~L~l~~~-~~~~~~~~~~-~~~~~L~~L~l~~~~~~~~~~~~~l-~~~~~L~  109 (469)
                      ++.+.+..+.++.+.-.......++++++|.+.++ .+++....++ ..|++|+.+++..|..+++...+.+ ..|++|.
T Consensus       140 lk~LSlrG~r~v~~sslrt~~~~CpnIehL~l~gc~~iTd~s~~sla~~C~~l~~l~L~~c~~iT~~~Lk~la~gC~kL~  219 (483)
T KOG4341|consen  140 LKELSLRGCRAVGDSSLRTFASNCPNIEHLALYGCKKITDSSLLSLARYCRKLRHLNLHSCSSITDVSLKYLAEGCRKLK  219 (483)
T ss_pred             cccccccccccCCcchhhHHhhhCCchhhhhhhcceeccHHHHHHHHHhcchhhhhhhcccchhHHHHHHHHHHhhhhHH
Confidence            77788888888888888888889999999999875 5677666666 5899999999999999999888855 5899999


Q ss_pred             EEeCCCCCcCcHHHHH-HHhCCCCCCEEeccccccccccc--ccccCCCCccEEEccCCCCCChhhhhccc-CCCCCCEE
Q 012186          110 SLSFRRNNAITAQGMK-AFAGLINLVKLDLERCTRIHGGL--VNLKGLMKLESLNIKWCNCITDSDMKPLS-GLTNLKSL  185 (469)
Q Consensus       110 ~L~l~~~~~~~~~~~~-~~~~l~~L~~L~l~~~~~~~~~~--~~l~~l~~L~~L~l~~~~~~~~~~~~~~~-~~~~L~~L  185 (469)
                      |++++.|+.+.+.... ....+..++.+..++|...+...  ..-+.++.+-.+++..|..+++.....+. ++..|+.+
T Consensus       220 ~lNlSwc~qi~~~gv~~~~rG~~~l~~~~~kGC~e~~le~l~~~~~~~~~i~~lnl~~c~~lTD~~~~~i~~~c~~lq~l  299 (483)
T KOG4341|consen  220 YLNLSWCPQISGNGVQALQRGCKELEKLSLKGCLELELEALLKAAAYCLEILKLNLQHCNQLTDEDLWLIACGCHALQVL  299 (483)
T ss_pred             HhhhccCchhhcCcchHHhccchhhhhhhhcccccccHHHHHHHhccChHhhccchhhhccccchHHHHHhhhhhHhhhh
Confidence            9999999876654333 34567778888888876544332  22245566777777788888876654443 67889999


Q ss_pred             Eeccc-ccChhhhhhc-cCCCCCCeeeccCC-CCchhhHHhhh-cCCCCcEEECCCCCCChhH-HHHh-hcCCCccEEEc
Q 012186          186 QISCS-KVTDSGIAYL-KGLQKLTLLNLEGC-PVTAACLDSLS-ALGSLFYLNLNRCQLSDDG-CEKF-SKIGSLKVLNL  259 (469)
Q Consensus       186 ~l~~~-~~~~~~~~~l-~~l~~L~~L~l~~~-~~~~~~~~~~~-~~~~L~~L~l~~~~~~~~~-~~~~-~~~~~L~~L~l  259 (469)
                      ..+++ .+++.....+ .++++|+.+.+.++ +++......++ +++.|+.+++..+...... ...+ .+++.|+.+.+
T Consensus       300 ~~s~~t~~~d~~l~aLg~~~~~L~~l~l~~c~~fsd~~ft~l~rn~~~Le~l~~e~~~~~~d~tL~sls~~C~~lr~lsl  379 (483)
T KOG4341|consen  300 CYSSCTDITDEVLWALGQHCHNLQVLELSGCQQFSDRGFTMLGRNCPHLERLDLEECGLITDGTLASLSRNCPRLRVLSL  379 (483)
T ss_pred             cccCCCCCchHHHHHHhcCCCceEEEeccccchhhhhhhhhhhcCChhhhhhcccccceehhhhHhhhccCCchhccCCh
Confidence            98765 4565555555 57789999999998 45554344444 4789999999887643322 2222 46899999999


Q ss_pred             cCCCC-chHHHHHh----hCCCCCCEEecCCCCC-ChHHHHHhhCCCCCCEEeccCCC-CChhhHHHh-hCCCCCcEEec
Q 012186          260 GFNEI-TDECLVHL----KGLTNLESLNLDSCGI-GDEGLVNLTGLCNLKCLELSDTQ-VGSSGLRHL-SGLTNLESINL  331 (469)
Q Consensus       260 ~~~~~-~~~~~~~~----~~l~~L~~L~l~~~~~-~~~~~~~~~~~~~L~~L~l~~~~-~~~~~~~~~-~~~~~L~~L~l  331 (469)
                      +++.. ++.....+    .....+..+.++++.. ++...+.+..+++|+.+++.+++ +.......+ ..+|++++..+
T Consensus       380 shce~itD~gi~~l~~~~c~~~~l~~lEL~n~p~i~d~~Le~l~~c~~Leri~l~~~q~vtk~~i~~~~~~lp~i~v~a~  459 (483)
T KOG4341|consen  380 SHCELITDEGIRHLSSSSCSLEGLEVLELDNCPLITDATLEHLSICRNLERIELIDCQDVTKEAISRFATHLPNIKVHAY  459 (483)
T ss_pred             hhhhhhhhhhhhhhhhccccccccceeeecCCCCchHHHHHHHhhCcccceeeeechhhhhhhhhHHHHhhCccceehhh
Confidence            98753 33322222    3456788888988854 44556667788899999988873 333333333 46777777666


Q ss_pred             cc
Q 012186          332 SF  333 (469)
Q Consensus       332 ~~  333 (469)
                      ..
T Consensus       460 ~a  461 (483)
T KOG4341|consen  460 FA  461 (483)
T ss_pred             cc
Confidence            54

>KOG0617 consensus Ras suppressor protein (contains leucine-rich repeats) [Signal transduction mechanisms]

Probab=99.30  E-value=2.3e-14  Score=110.29  Aligned_cols=157  Identities=18%  Similarity=0.176  Sum_probs=96.8

Q ss_pred             cCCCCCEEecCCCcccChhHhHhhhCCCCCCEEeCCCCCcCcHHHHHHHhCCCCCCEEecccccccccccccccCCCCcc
Q 012186           79 DCSNLQSLDFNFCIQISDGGLEHLRGLSNLTSLSFRRNNAITAQGMKAFAGLINLVKLDLERCTRIHGGLVNLKGLMKLE  158 (469)
Q Consensus        79 ~~~~L~~L~l~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~  158 (469)
                      .+.++..|.++++ +++. .+..+..+.+|+.|+++++.+  ...|..++.+++|+.|+++-+ .....|..++.+|.|+
T Consensus        31 ~~s~ITrLtLSHN-Kl~~-vppnia~l~nlevln~~nnqi--e~lp~~issl~klr~lnvgmn-rl~~lprgfgs~p~le  105 (264)
T KOG0617|consen   31 NMSNITRLTLSHN-KLTV-VPPNIAELKNLEVLNLSNNQI--EELPTSISSLPKLRILNVGMN-RLNILPRGFGSFPALE  105 (264)
T ss_pred             chhhhhhhhcccC-ceee-cCCcHHHhhhhhhhhcccchh--hhcChhhhhchhhhheecchh-hhhcCccccCCCchhh
Confidence            4556666666663 3433 345566667777777776665  556667777777777777654 4555566677777777


Q ss_pred             EEEccCCCCCChhhhhcccCCCCCCEEEecccccChhhhhhccCCCCCCeeeccCCCCchhhHHhhhcCCCCcEEECCCC
Q 012186          159 SLNIKWCNCITDSDMKPLSGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACLDSLSALGSLFYLNLNRC  238 (469)
Q Consensus       159 ~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~  238 (469)
                      +|++.+++--....+..+..+..|+.|.+.+|.+. ..+..++++++|+.|.+..|.+... |..++.++.|++|++.+|
T Consensus       106 vldltynnl~e~~lpgnff~m~tlralyl~dndfe-~lp~dvg~lt~lqil~lrdndll~l-pkeig~lt~lrelhiqgn  183 (264)
T KOG0617|consen  106 VLDLTYNNLNENSLPGNFFYMTTLRALYLGDNDFE-ILPPDVGKLTNLQILSLRDNDLLSL-PKEIGDLTRLRELHIQGN  183 (264)
T ss_pred             hhhccccccccccCCcchhHHHHHHHHHhcCCCcc-cCChhhhhhcceeEEeeccCchhhC-cHHHHHHHHHHHHhcccc
Confidence            77777755444455566666666777777666665 3344556666666666666655443 455556666666666666


Q ss_pred             CCCh
Q 012186          239 QLSD  242 (469)
Q Consensus       239 ~~~~  242 (469)
                      .++.
T Consensus       184 rl~v  187 (264)
T KOG0617|consen  184 RLTV  187 (264)
T ss_pred             eeee
Confidence            5543

>KOG2120 consensus SCF ubiquitin ligase, Skp2 component [Posttranslational modification, protein turnover, chaperones]

Probab=99.29  E-value=3.6e-12  Score=107.21  Aligned_cols=263  Identities=22%  Similarity=0.245  Sum_probs=152.3

Q ss_pred             CcHHHHHHHHHHHHhccCCCHHhHHhhccCceeEEecCCCCCCCHHHHHHHHhcCCCccEEEecCCCCChHhhHhhhcCC
Q 012186            2 LPRDISQQIFNELVYSRCLTEVSLEAFRDCALQDLCLGQYPGVNDKWMDVIASQGSSLLSVDLSGSDVTDSGLIHLKDCS   81 (469)
Q Consensus         2 ~~~e~~~~~~~~lv~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~l~~L~l~~~~~~~~~~~~~~~~~   81 (469)
                      +|.|+..++|.-|...-++....                   ++..|. .++......+.+|+.+-.|.......+. =.
T Consensus       101 lpDEill~IFs~L~kk~LL~~~~-------------------VC~Rfy-r~~~de~lW~~lDl~~r~i~p~~l~~l~-~r  159 (419)
T KOG2120|consen  101 LPDEILLGIFSCLCKKELLKVSG-------------------VCKRFY-RLASDESLWQTLDLTGRNIHPDVLGRLL-SR  159 (419)
T ss_pred             CCHHHHHHHHHhccHHHHHHHHH-------------------HHHHHh-hccccccceeeeccCCCccChhHHHHHH-hC
Confidence            68888888887766555554331                   122222 1233445677788877666533222221 12


Q ss_pred             CCCEEecCCCcccChh-HhHhhhCC-CCCCEEeCCCCCcCcHHHHHHHhCCCCCCEEecccccccccccccccCCCCccE
Q 012186           82 NLQSLDFNFCIQISDG-GLEHLRGL-SNLTSLSFRRNNAITAQGMKAFAGLINLVKLDLERCTRIHGGLVNLKGLMKLES  159 (469)
Q Consensus        82 ~L~~L~l~~~~~~~~~-~~~~l~~~-~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~  159 (469)
                      .+.++.+.. ..+... ..+.+.-+ .+|++|||++..+.....-..++.|.+|+.|++.+....+.....+++-.+|+.
T Consensus       160 gV~v~Rlar-~~~~~prlae~~~~frsRlq~lDLS~s~it~stl~~iLs~C~kLk~lSlEg~~LdD~I~~~iAkN~~L~~  238 (419)
T KOG2120|consen  160 GVIVFRLAR-SFMDQPRLAEHFSPFRSRLQHLDLSNSVITVSTLHGILSQCSKLKNLSLEGLRLDDPIVNTIAKNSNLVR  238 (419)
T ss_pred             CeEEEEcch-hhhcCchhhhhhhhhhhhhHHhhcchhheeHHHHHHHHHHHHhhhhccccccccCcHHHHHHhcccccee
Confidence            344444432 111111 12222222 368899999887766777788888999999999887655555566777888888


Q ss_pred             EEccCCCCCChhhhh-cccCCCCCCEEEecccccChhhhhhc--cCCCCCCeeeccCCC--CchhhHH-hhhcCCCCcEE
Q 012186          160 LNIKWCNCITDSDMK-PLSGLTNLKSLQISCSKVTDSGIAYL--KGLQKLTLLNLEGCP--VTAACLD-SLSALGSLFYL  233 (469)
Q Consensus       160 L~l~~~~~~~~~~~~-~~~~~~~L~~L~l~~~~~~~~~~~~l--~~l~~L~~L~l~~~~--~~~~~~~-~~~~~~~L~~L  233 (469)
                      |+++.|+.++..... .+..+..|..|+++.+.+........  +--++|..|+++|+.  +.....+ ...++|+|..|
T Consensus       239 lnlsm~sG~t~n~~~ll~~scs~L~~LNlsWc~l~~~~Vtv~V~hise~l~~LNlsG~rrnl~~sh~~tL~~rcp~l~~L  318 (419)
T KOG2120|consen  239 LNLSMCSGFTENALQLLLSSCSRLDELNLSWCFLFTEKVTVAVAHISETLTQLNLSGYRRNLQKSHLSTLVRRCPNLVHL  318 (419)
T ss_pred             eccccccccchhHHHHHHHhhhhHhhcCchHhhccchhhhHHHhhhchhhhhhhhhhhHhhhhhhHHHHHHHhCCceeee
Confidence            888888877765443 34577888888888776554333222  223567777777762  2111112 22356777777


Q ss_pred             ECCCCC-CChhHHHHhhcCCCccEEEccCCCCc-hHHHHHhhCCCCCCEEecCCC
Q 012186          234 NLNRCQ-LSDDGCEKFSKIGSLKVLNLGFNEIT-DECLVHLKGLTNLESLNLDSC  286 (469)
Q Consensus       234 ~l~~~~-~~~~~~~~~~~~~~L~~L~l~~~~~~-~~~~~~~~~l~~L~~L~l~~~  286 (469)
                      +++++. +.......|..++.|++|.++.|..- ....-.+...|.|.+|++.++
T Consensus       319 DLSD~v~l~~~~~~~~~kf~~L~~lSlsRCY~i~p~~~~~l~s~psl~yLdv~g~  373 (419)
T KOG2120|consen  319 DLSDSVMLKNDCFQEFFKFNYLQHLSLSRCYDIIPETLLELNSKPSLVYLDVFGC  373 (419)
T ss_pred             ccccccccCchHHHHHHhcchheeeehhhhcCCChHHeeeeccCcceEEEEeccc
Confidence            776654 44444455566677777777665421 111112345566666666665

>KOG3207 consensus Beta-tubulin folding cofactor E [Posttranslational modification, protein turnover, chaperones]

Probab=99.27  E-value=8.9e-13  Score=116.55  Aligned_cols=212  Identities=21%  Similarity=0.234  Sum_probs=123.8

Q ss_pred             hcCCCccEEEccCCCCchHHH-HHhhCCCCCCEEecCCCCCCh--HHHHHhhCCCCCCEEeccCCCCChhhHHH-hhCCC
Q 012186          249 SKIGSLKVLNLGFNEITDECL-VHLKGLTNLESLNLDSCGIGD--EGLVNLTGLCNLKCLELSDTQVGSSGLRH-LSGLT  324 (469)
Q Consensus       249 ~~~~~L~~L~l~~~~~~~~~~-~~~~~l~~L~~L~l~~~~~~~--~~~~~~~~~~~L~~L~l~~~~~~~~~~~~-~~~~~  324 (469)
                      ..+.+|+.+.+.++....... .....+++++.|+++.|-+..  ........+|+|+.|+++.|.+....... -..++
T Consensus       118 sn~kkL~~IsLdn~~V~~~~~~~~~k~~~~v~~LdLS~NL~~nw~~v~~i~eqLp~Le~LNls~Nrl~~~~~s~~~~~l~  197 (505)
T KOG3207|consen  118 SNLKKLREISLDNYRVEDAGIEEYSKILPNVRDLDLSRNLFHNWFPVLKIAEQLPSLENLNLSSNRLSNFISSNTTLLLS  197 (505)
T ss_pred             hhHHhhhheeecCccccccchhhhhhhCCcceeecchhhhHHhHHHHHHHHHhcccchhcccccccccCCccccchhhhh
Confidence            345666666666655443221 234566777777777664332  12223346677777777776543322111 12557


Q ss_pred             CCcEEecccCCCCchHHHh-hhCCCCCcEEEccCCCCCHHHHHHHhcCCCCCEeecCCCCCChhH-HHHhHcCCCCCeee
Q 012186          325 NLESINLSFTGISDGSLRK-LAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLFGARITDSG-AAYLRNFKNLRSLE  402 (469)
Q Consensus       325 ~L~~L~l~~~~~~~~~~~~-~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~-~~~~~~~~~L~~L~  402 (469)
                      .|+.|.++.|.++...... +..+|+|+.|.+..|............+..|++|++++|.+.+.. ......++.|..|+
T Consensus       198 ~lK~L~l~~CGls~k~V~~~~~~fPsl~~L~L~~N~~~~~~~~~~~i~~~L~~LdLs~N~li~~~~~~~~~~l~~L~~Ln  277 (505)
T KOG3207|consen  198 HLKQLVLNSCGLSWKDVQWILLTFPSLEVLYLEANEIILIKATSTKILQTLQELDLSNNNLIDFDQGYKVGTLPGLNQLN  277 (505)
T ss_pred             hhheEEeccCCCCHHHHHHHHHhCCcHHHhhhhcccccceecchhhhhhHHhhccccCCcccccccccccccccchhhhh
Confidence            7777777777776543333 345788888888776321111222334556778888877665432 23456677888888


Q ss_pred             eCCCCCCHHHH-H-----HHhcCCCCCeeeccCCCCCChhHHHHHHhCcccccccccCCCCCHH
Q 012186          403 ICGGGLTDAGV-K-----HIKDLSSLTLLNLSQNCNLTDKTLELISGLTGLVSLNVSNSRITSA  460 (469)
Q Consensus       403 l~~~~~~~~~~-~-----~l~~~~~L~~L~l~~~~~l~~~~~~~l~~l~~L~~L~l~~~~~~~~  460 (469)
                      ++.+.+..... .     -...+++|++|++..|+.........+..+++|+.|.+..|+++.+
T Consensus       278 ls~tgi~si~~~d~~s~~kt~~f~kL~~L~i~~N~I~~w~sl~~l~~l~nlk~l~~~~n~ln~e  341 (505)
T KOG3207|consen  278 LSSTGIASIAEPDVESLDKTHTFPKLEYLNISENNIRDWRSLNHLRTLENLKHLRITLNYLNKE  341 (505)
T ss_pred             ccccCcchhcCCCccchhhhcccccceeeecccCccccccccchhhccchhhhhhccccccccc
Confidence            88877765321 1     1234788888888888432333445566677888888777777653

>KOG0617 consensus Ras suppressor protein (contains leucine-rich repeats) [Signal transduction mechanisms]

Probab=99.26  E-value=2.1e-14  Score=110.50  Aligned_cols=158  Identities=23%  Similarity=0.253  Sum_probs=102.2

Q ss_pred             CCCCCEEecCCCCCChHHHHHhhCCCCCCEEeccCCCCChhhHHHhhCCCCCcEEecccCCCCchHHHhhhCCCCCcEEE
Q 012186          275 LTNLESLNLDSCGIGDEGLVNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISDGSLRKLAGLSSLKSLN  354 (469)
Q Consensus       275 l~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~  354 (469)
                      +.+++.|.+++|.++.. ++.++.+.+|+.|++.+|++.. .+..++.+++|+.|+++-|.+.. .|..|+.+|.|+.|+
T Consensus        32 ~s~ITrLtLSHNKl~~v-ppnia~l~nlevln~~nnqie~-lp~~issl~klr~lnvgmnrl~~-lprgfgs~p~levld  108 (264)
T KOG0617|consen   32 MSNITRLTLSHNKLTVV-PPNIAELKNLEVLNLSNNQIEE-LPTSISSLPKLRILNVGMNRLNI-LPRGFGSFPALEVLD  108 (264)
T ss_pred             hhhhhhhhcccCceeec-CCcHHHhhhhhhhhcccchhhh-cChhhhhchhhhheecchhhhhc-CccccCCCchhhhhh
Confidence            34555566666665432 3345566666666666666554 34456666777777766555432 456677777777777


Q ss_pred             ccCCCCCHH-HHHHHhcCCCCCEeecCCCCCChhHHHHhHcCCCCCeeeeCCCCCCHHHHHHHhcCCCCCeeeccCCCCC
Q 012186          355 LDARQITDT-GLAALTSLTGLTHLDLFGARITDSGAAYLRNFKNLRSLEICGGGLTDAGVKHIKDLSSLTLLNLSQNCNL  433 (469)
Q Consensus       355 l~~~~~~~~-~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~l  433 (469)
                      +.+|++.+. .+..|..+..|+-|.++.|.+.- .|..++++.+||.|.+..|.+... |..++.++.|++|+|++| .+
T Consensus       109 ltynnl~e~~lpgnff~m~tlralyl~dndfe~-lp~dvg~lt~lqil~lrdndll~l-pkeig~lt~lrelhiqgn-rl  185 (264)
T KOG0617|consen  109 LTYNNLNENSLPGNFFYMTTLRALYLGDNDFEI-LPPDVGKLTNLQILSLRDNDLLSL-PKEIGDLTRLRELHIQGN-RL  185 (264)
T ss_pred             ccccccccccCCcchhHHHHHHHHHhcCCCccc-CChhhhhhcceeEEeeccCchhhC-cHHHHHHHHHHHHhcccc-ee
Confidence            777666542 23445566667777777776654 456677788888888888777665 667777888888888888 55


Q ss_pred             ChhHH
Q 012186          434 TDKTL  438 (469)
Q Consensus       434 ~~~~~  438 (469)
                      +-.+|
T Consensus       186 ~vlpp  190 (264)
T KOG0617|consen  186 TVLPP  190 (264)
T ss_pred             eecCh
Confidence            55444

>KOG4658 consensus Apoptotic ATPase [Signal transduction mechanisms]

Probab=99.19  E-value=6.2e-12  Score=126.80  Aligned_cols=243  Identities=23%  Similarity=0.242  Sum_probs=148.9

Q ss_pred             cCCCccEEEecCCC--CChHhhHhhhcCCCCCEEecCCCcccChhHhHhhhCCCCCCEEeCCCCCcCcHHHHHHHhCCCC
Q 012186           55 QGSSLLSVDLSGSD--VTDSGLIHLKDCSNLQSLDFNFCIQISDGGLEHLRGLSNLTSLSFRRNNAITAQGMKAFAGLIN  132 (469)
Q Consensus        55 ~~~~l~~L~l~~~~--~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~l~~  132 (469)
                      .++++++|-+.++.  +.......|..++.|++|++++|... ...|..++.+-+||||+++++.+  ..+|..++++.+
T Consensus       543 ~~~~L~tLll~~n~~~l~~is~~ff~~m~~LrVLDLs~~~~l-~~LP~~I~~Li~LryL~L~~t~I--~~LP~~l~~Lk~  619 (889)
T KOG4658|consen  543 ENPKLRTLLLQRNSDWLLEISGEFFRSLPLLRVLDLSGNSSL-SKLPSSIGELVHLRYLDLSDTGI--SHLPSGLGNLKK  619 (889)
T ss_pred             CCCccceEEEeecchhhhhcCHHHHhhCcceEEEECCCCCcc-CcCChHHhhhhhhhcccccCCCc--cccchHHHHHHh
Confidence            45679999999875  44444566889999999999986544 34689999999999999999986  578999999999


Q ss_pred             CCEEecccccccccccccccCCCCccEEEccCCC-CCChhhhhcccCCCCCCEEEecccccChhhhhhccCCCCCCe---
Q 012186          133 LVKLDLERCTRIHGGLVNLKGLMKLESLNIKWCN-CITDSDMKPLSGLTNLKSLQISCSKVTDSGIAYLKGLQKLTL---  208 (469)
Q Consensus       133 L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~-~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~l~~L~~---  208 (469)
                      |.+|++..+......+.....+++||+|.+.... ..+......+..+.+|+.+.+.....  .....+...+.|.+   
T Consensus       620 L~~Lnl~~~~~l~~~~~i~~~L~~Lr~L~l~~s~~~~~~~~l~el~~Le~L~~ls~~~~s~--~~~e~l~~~~~L~~~~~  697 (889)
T KOG4658|consen  620 LIYLNLEVTGRLESIPGILLELQSLRVLRLPRSALSNDKLLLKELENLEHLENLSITISSV--LLLEDLLGMTRLRSLLQ  697 (889)
T ss_pred             hheeccccccccccccchhhhcccccEEEeeccccccchhhHHhhhcccchhhheeecchh--HhHhhhhhhHHHHHHhH
Confidence            9999999876555555556779999999998754 33334455566777777777643332  11222333333332   


Q ss_pred             -eeccCCCCchhhHHhhhcCCCCcEEECCCCCCChhHHHHhhc------CCCccEEEccCCCCchHHHHHhhCCCCCCEE
Q 012186          209 -LNLEGCPVTAACLDSLSALGSLFYLNLNRCQLSDDGCEKFSK------IGSLKVLNLGFNEITDECLVHLKGLTNLESL  281 (469)
Q Consensus       209 -L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~------~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L  281 (469)
                       +.+.++... .....+..+.+|+.|.+.++...+........      ++++..+.+.++... ..+.+....++|+.|
T Consensus       698 ~l~~~~~~~~-~~~~~~~~l~~L~~L~i~~~~~~e~~~~~~~~~~~~~~f~~l~~~~~~~~~~~-r~l~~~~f~~~L~~l  775 (889)
T KOG4658|consen  698 SLSIEGCSKR-TLISSLGSLGNLEELSILDCGISEIVIEWEESLIVLLCFPNLSKVSILNCHML-RDLTWLLFAPHLTSL  775 (889)
T ss_pred             hhhhcccccc-eeecccccccCcceEEEEcCCCchhhcccccccchhhhHHHHHHHHhhccccc-cccchhhccCcccEE
Confidence             222222222 22445667788888888887765432211111      112222222222111 112223344667777


Q ss_pred             ecCCCCCChHHHHHhhCCCCCCE
Q 012186          282 NLDSCGIGDEGLVNLTGLCNLKC  304 (469)
Q Consensus       282 ~l~~~~~~~~~~~~~~~~~~L~~  304 (469)
                      .+..|....++++....+..++.
T Consensus       776 ~l~~~~~~e~~i~~~k~~~~l~~  798 (889)
T KOG4658|consen  776 SLVSCRLLEDIIPKLKALLELKE  798 (889)
T ss_pred             EEecccccccCCCHHHHhhhccc
Confidence            77666554444444444444443

>KOG3207 consensus Beta-tubulin folding cofactor E [Posttranslational modification, protein turnover, chaperones]

Probab=99.15  E-value=2.1e-11  Score=108.07  Aligned_cols=135  Identities=22%  Similarity=0.242  Sum_probs=54.4

Q ss_pred             CCCCCEEeccccccccccc-ccccCCCCccEEEccCCCCCChhhhhcccCCCCCCEEEecccccChhh-hhhccCCCCCC
Q 012186          130 LINLVKLDLERCTRIHGGL-VNLKGLMKLESLNIKWCNCITDSDMKPLSGLTNLKSLQISCSKVTDSG-IAYLKGLQKLT  207 (469)
Q Consensus       130 l~~L~~L~l~~~~~~~~~~-~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~-~~~l~~l~~L~  207 (469)
                      +++|+.|.++.|....... ..+..+|+|+.|++.++..+. ........+..|+.|++++|.+.+.. ......++.|+
T Consensus       196 l~~lK~L~l~~CGls~k~V~~~~~~fPsl~~L~L~~N~~~~-~~~~~~~i~~~L~~LdLs~N~li~~~~~~~~~~l~~L~  274 (505)
T KOG3207|consen  196 LSHLKQLVLNSCGLSWKDVQWILLTFPSLEVLYLEANEIIL-IKATSTKILQTLQELDLSNNNLIDFDQGYKVGTLPGLN  274 (505)
T ss_pred             hhhhheEEeccCCCCHHHHHHHHHhCCcHHHhhhhcccccc-eecchhhhhhHHhhccccCCcccccccccccccccchh
Confidence            3445555555543332222 113344555555554432111 01111122344555555544433221 12234445555


Q ss_pred             eeeccCCCCchhhH------HhhhcCCCCcEEECCCCCCChh-HHHHhhcCCCccEEEccCCCCc
Q 012186          208 LLNLEGCPVTAACL------DSLSALGSLFYLNLNRCQLSDD-GCEKFSKIGSLKVLNLGFNEIT  265 (469)
Q Consensus       208 ~L~l~~~~~~~~~~------~~~~~~~~L~~L~l~~~~~~~~-~~~~~~~~~~L~~L~l~~~~~~  265 (469)
                      .|+++.+.+...-.      .....+++|++|++..|++.+- ....+..+++|+.|.+..+.++
T Consensus       275 ~Lnls~tgi~si~~~d~~s~~kt~~f~kL~~L~i~~N~I~~w~sl~~l~~l~nlk~l~~~~n~ln  339 (505)
T KOG3207|consen  275 QLNLSSTGIASIAEPDVESLDKTHTFPKLEYLNISENNIRDWRSLNHLRTLENLKHLRITLNYLN  339 (505)
T ss_pred             hhhccccCcchhcCCCccchhhhcccccceeeecccCccccccccchhhccchhhhhhccccccc
Confidence            55555444333110      1122345566666655554221 1123334455555555444443

>PF14580 LRR_9: Leucine-rich repeat; PDB: 2JE1_D 2JE0_A 2JQD_A

Probab=99.12  E-value=4e-11  Score=96.73  Aligned_cols=126  Identities=29%  Similarity=0.349  Sum_probs=36.1

Q ss_pred             CCCCcEEecccCCCCchHHHhhh-CCCCCcEEEccCCCCCHHHHHHHhcCCCCCEeecCCCCCChhHHHHhHcCCCCCee
Q 012186          323 LTNLESINLSFTGISDGSLRKLA-GLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLFGARITDSGAAYLRNFKNLRSL  401 (469)
Q Consensus       323 ~~~L~~L~l~~~~~~~~~~~~~~-~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L  401 (469)
                      +.++++|++.++.++..  ..++ .+.+|+.|++++|.++..  ..+..++.|+.|++++|.+++........+|+|+.|
T Consensus        18 ~~~~~~L~L~~n~I~~I--e~L~~~l~~L~~L~Ls~N~I~~l--~~l~~L~~L~~L~L~~N~I~~i~~~l~~~lp~L~~L   93 (175)
T PF14580_consen   18 PVKLRELNLRGNQISTI--ENLGATLDKLEVLDLSNNQITKL--EGLPGLPRLKTLDLSNNRISSISEGLDKNLPNLQEL   93 (175)
T ss_dssp             --------------------S--TT-TT--EEE-TTS--S----TT----TT--EEE--SS---S-CHHHHHH-TT--EE
T ss_pred             ccccccccccccccccc--cchhhhhcCCCEEECCCCCCccc--cCccChhhhhhcccCCCCCCccccchHHhCCcCCEE
Confidence            33455555555555432  2233 345566666666666552  344555666666666666665433222346666666


Q ss_pred             eeCCCCCCHHH-HHHHhcCCCCCeeeccCCCCC--ChhHHHHHHhCcccccccc
Q 012186          402 EICGGGLTDAG-VKHIKDLSSLTLLNLSQNCNL--TDKTLELISGLTGLVSLNV  452 (469)
Q Consensus       402 ~l~~~~~~~~~-~~~l~~~~~L~~L~l~~~~~l--~~~~~~~l~~l~~L~~L~l  452 (469)
                      ++++|++.+.. ...+..+++|+.|++.+||..  ...-...+..+|+|+.||-
T Consensus        94 ~L~~N~I~~l~~l~~L~~l~~L~~L~L~~NPv~~~~~YR~~vi~~lP~Lk~LD~  147 (175)
T PF14580_consen   94 YLSNNKISDLNELEPLSSLPKLRVLSLEGNPVCEKKNYRLFVIYKLPSLKVLDG  147 (175)
T ss_dssp             E-TTS---SCCCCGGGGG-TT--EEE-TT-GGGGSTTHHHHHHHH-TT-SEETT
T ss_pred             ECcCCcCCChHHhHHHHcCCCcceeeccCCcccchhhHHHHHHHHcChhheeCC
Confidence            66666554421 123455666777777666421  1112233456677776664

>KOG2120 consensus SCF ubiquitin ligase, Skp2 component [Posttranslational modification, protein turnover, chaperones]

Probab=99.10  E-value=6.6e-11  Score=99.75  Aligned_cols=206  Identities=23%  Similarity=0.261  Sum_probs=143.1

Q ss_pred             HHHHHhcCCCccEEEecCCCCChHhh-HhhhcCCCCCEEecCCCcccChhHhHhhhCCCCCCEEeCCCCCcCcHHHH-HH
Q 012186           49 MDVIASQGSSLLSVDLSGSDVTDSGL-IHLKDCSNLQSLDFNFCIQISDGGLEHLRGLSNLTSLSFRRNNAITAQGM-KA  126 (469)
Q Consensus        49 ~~~~~~~~~~l~~L~l~~~~~~~~~~-~~~~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~-~~  126 (469)
                      .+......+.++++||+...|+.... ..++.|.+|+.|+++| ..+.+.....+.+-.+|+.|+++.|..++.... -.
T Consensus       177 ae~~~~frsRlq~lDLS~s~it~stl~~iLs~C~kLk~lSlEg-~~LdD~I~~~iAkN~~L~~lnlsm~sG~t~n~~~ll  255 (419)
T KOG2120|consen  177 AEHFSPFRSRLQHLDLSNSVITVSTLHGILSQCSKLKNLSLEG-LRLDDPIVNTIAKNSNLVRLNLSMCSGFTENALQLL  255 (419)
T ss_pred             hhhhhhhhhhhHHhhcchhheeHHHHHHHHHHHHhhhhccccc-cccCcHHHHHHhccccceeeccccccccchhHHHHH
Confidence            33444444678999999888876444 5568999999999998 578888888888889999999999887766544 45


Q ss_pred             HhCCCCCCEEeccccccccccccc-cc-CCCCccEEEccCCCCCC-hhhhhcc-cCCCCCCEEEeccc-ccChhhhhhcc
Q 012186          127 FAGLINLVKLDLERCTRIHGGLVN-LK-GLMKLESLNIKWCNCIT-DSDMKPL-SGLTNLKSLQISCS-KVTDSGIAYLK  201 (469)
Q Consensus       127 ~~~l~~L~~L~l~~~~~~~~~~~~-l~-~l~~L~~L~l~~~~~~~-~~~~~~~-~~~~~L~~L~l~~~-~~~~~~~~~l~  201 (469)
                      +..|..|..|+++.|......... +. --++|..|+++|+...- ......+ ..+|+|.+|+++++ .++......+.
T Consensus       256 ~~scs~L~~LNlsWc~l~~~~Vtv~V~hise~l~~LNlsG~rrnl~~sh~~tL~~rcp~l~~LDLSD~v~l~~~~~~~~~  335 (419)
T KOG2120|consen  256 LSSCSRLDELNLSWCFLFTEKVTVAVAHISETLTQLNLSGYRRNLQKSHLSTLVRRCPNLVHLDLSDSVMLKNDCFQEFF  335 (419)
T ss_pred             HHhhhhHhhcCchHhhccchhhhHHHhhhchhhhhhhhhhhHhhhhhhHHHHHHHhCCceeeeccccccccCchHHHHHH
Confidence            678999999999998655544322 22 23678888888864322 1122222 47899999999876 56666677888


Q ss_pred             CCCCCCeeeccCCCCch-hhHHhhhcCCCCcEEECCCCCCChhHHHHh-hcCCCccE
Q 012186          202 GLQKLTLLNLEGCPVTA-ACLDSLSALGSLFYLNLNRCQLSDDGCEKF-SKIGSLKV  256 (469)
Q Consensus       202 ~l~~L~~L~l~~~~~~~-~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~-~~~~~L~~  256 (469)
                      +++.|++|.++.|.... ...-.+...|.|.+|++.++--.. ..+.+ ..+++|+.
T Consensus       336 kf~~L~~lSlsRCY~i~p~~~~~l~s~psl~yLdv~g~vsdt-~mel~~e~~~~lki  391 (419)
T KOG2120|consen  336 KFNYLQHLSLSRCYDIIPETLLELNSKPSLVYLDVFGCVSDT-TMELLKEMLSHLKI  391 (419)
T ss_pred             hcchheeeehhhhcCCChHHeeeeccCcceEEEEeccccCch-HHHHHHHhCccccc
Confidence            89999999999884322 222235567999999998864332 22222 34555544

>KOG1259 consensus Nischarin, modulator of integrin alpha5 subunit action [Signal transduction mechanisms; Cytoskeleton]

Probab=98.92  E-value=4.3e-10  Score=95.08  Aligned_cols=126  Identities=26%  Similarity=0.354  Sum_probs=58.9

Q ss_pred             CCCeeeccCCCCchhhHHhhhcCCCCcEEECCCCCCChhHHHHhhcCCCccEEEccCCCCchHHHHHhhCCCCCCEEecC
Q 012186          205 KLTLLNLEGCPVTAACLDSLSALGSLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNLD  284 (469)
Q Consensus       205 ~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~  284 (469)
                      .|+++++++|.++.+ .++..-.|.++.|+++.|.+....  .++.+++|+.|++++|.++. ...|-..+-|+++|.+.
T Consensus       285 ~LtelDLS~N~I~~i-DESvKL~Pkir~L~lS~N~i~~v~--nLa~L~~L~~LDLS~N~Ls~-~~Gwh~KLGNIKtL~La  360 (490)
T KOG1259|consen  285 ELTELDLSGNLITQI-DESVKLAPKLRRLILSQNRIRTVQ--NLAELPQLQLLDLSGNLLAE-CVGWHLKLGNIKTLKLA  360 (490)
T ss_pred             hhhhccccccchhhh-hhhhhhccceeEEeccccceeeeh--hhhhcccceEeecccchhHh-hhhhHhhhcCEeeeehh
Confidence            455555555554442 233344455555555555544322  24455555555555555442 22222334455555555


Q ss_pred             CCCCChHHHHHhhCCCCCCEEeccCCCCChh-hHHHhhCCCCCcEEecccCCC
Q 012186          285 SCGIGDEGLVNLTGLCNLKCLELSDTQVGSS-GLRHLSGLTNLESINLSFTGI  336 (469)
Q Consensus       285 ~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~-~~~~~~~~~~L~~L~l~~~~~  336 (469)
                      .|.+..  ...+..+-+|..|++.+|++... ....++++|.|+.+.+.+|.+
T Consensus       361 ~N~iE~--LSGL~KLYSLvnLDl~~N~Ie~ldeV~~IG~LPCLE~l~L~~NPl  411 (490)
T KOG1259|consen  361 QNKIET--LSGLRKLYSLVNLDLSSNQIEELDEVNHIGNLPCLETLRLTGNPL  411 (490)
T ss_pred             hhhHhh--hhhhHhhhhheeccccccchhhHHHhcccccccHHHHHhhcCCCc
Confidence            554321  22333444555555555544332 123344555555555554443

>COG5238 RNA1 Ran GTPase-activating protein (RanGAP) involved in mRNA processing and transport [Signal transduction mechanisms / RNA processing and modification]

Probab=98.90  E-value=1.5e-08  Score=84.66  Aligned_cols=251  Identities=22%  Similarity=0.245  Sum_probs=116.1

Q ss_pred             hccCCCCCCeeeccCCCCchhhHHhhh----cCCCCcEEECCCCC---CChhH-------HHHhhcCCCccEEEccCCCC
Q 012186          199 YLKGLQKLTLLNLEGCPVTAACLDSLS----ALGSLFYLNLNRCQ---LSDDG-------CEKFSKIGSLKVLNLGFNEI  264 (469)
Q Consensus       199 ~l~~l~~L~~L~l~~~~~~~~~~~~~~----~~~~L~~L~l~~~~---~~~~~-------~~~~~~~~~L~~L~l~~~~~  264 (469)
                      .+..+..+..++++||.+...-..+++    +-.+|+..+++.-.   ..+..       ...+..||+|+..+++.|.+
T Consensus        25 el~~~d~~~evdLSGNtigtEA~e~l~~~ia~~~~L~vvnfsd~ftgr~kde~~~~L~~Ll~aLlkcp~l~~v~LSDNAf  104 (388)
T COG5238          25 ELEMMDELVEVDLSGNTIGTEAMEELCNVIANVRNLRVVNFSDAFTGRDKDELYSNLVMLLKALLKCPRLQKVDLSDNAF  104 (388)
T ss_pred             HHHhhcceeEEeccCCcccHHHHHHHHHHHhhhcceeEeehhhhhhcccHHHHHHHHHHHHHHHhcCCcceeeecccccc
Confidence            344466677777777766554333333    33555555554321   11111       12334556666666665554


Q ss_pred             chHHH----HHhhCCCCCCEEecCCCCCChHHHHHhhCCCCCCEEeccCCCCChhhHHHhhCCCCCcEEecccCCCCchH
Q 012186          265 TDECL----VHLKGLTNLESLNLDSCGIGDEGLVNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISDGS  340 (469)
Q Consensus       265 ~~~~~----~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~  340 (469)
                      ....+    ..++..+.|.+|.+++|+++......++.-  |.+|         .-......-|.|+......|++....
T Consensus       105 g~~~~e~L~d~is~~t~l~HL~l~NnGlGp~aG~rigka--l~~l---------a~nKKaa~kp~Le~vicgrNRlengs  173 (388)
T COG5238         105 GSEFPEELGDLISSSTDLVHLKLNNNGLGPIAGGRIGKA--LFHL---------AYNKKAADKPKLEVVICGRNRLENGS  173 (388)
T ss_pred             CcccchHHHHHHhcCCCceeEEeecCCCCccchhHHHHH--HHHH---------HHHhhhccCCCceEEEeccchhccCc
Confidence            43222    223444556666666655432211111100  0000         00001123355555555555443322


Q ss_pred             HHh----hhCCCCCcEEEccCCCCCHHHHH-----HHhcCCCCCEeecCCCCCChhHH----HHhHcCCCCCeeeeCCCC
Q 012186          341 LRK----LAGLSSLKSLNLDARQITDTGLA-----ALTSLTGLTHLDLFGARITDSGA----AYLRNFKNLRSLEICGGG  407 (469)
Q Consensus       341 ~~~----~~~~~~L~~L~l~~~~~~~~~~~-----~l~~~~~L~~L~l~~~~~~~~~~----~~~~~~~~L~~L~l~~~~  407 (469)
                      ...    +..-..|+.+.+..|.|...+..     .+..+.+|+.|++..|-++-...    ..+..++.|+.|.+..|-
T Consensus       174 ~~~~a~~l~sh~~lk~vki~qNgIrpegv~~L~~~gl~y~~~LevLDlqDNtft~~gS~~La~al~~W~~lrEL~lnDCl  253 (388)
T COG5238         174 KELSAALLESHENLKEVKIQQNGIRPEGVTMLAFLGLFYSHSLEVLDLQDNTFTLEGSRYLADALCEWNLLRELRLNDCL  253 (388)
T ss_pred             HHHHHHHHHhhcCceeEEeeecCcCcchhHHHHHHHHHHhCcceeeeccccchhhhhHHHHHHHhcccchhhhccccchh
Confidence            211    11224556666665555543222     23355666666666665543322    233445566666666665


Q ss_pred             CCHHHHHHH------hcCCCCCeeeccCCCCC----ChhHHHHH--HhCcccccccccCCCCCHH
Q 012186          408 LTDAGVKHI------KDLSSLTLLNLSQNCNL----TDKTLELI--SGLTGLVSLNVSNSRITSA  460 (469)
Q Consensus       408 ~~~~~~~~l------~~~~~L~~L~l~~~~~l----~~~~~~~l--~~l~~L~~L~l~~~~~~~~  460 (469)
                      +...+...+      ...|+|..|....|..-    .......+  +.+|-|..+.+.+|.+.+.
T Consensus       254 ls~~G~~~v~~~f~e~~~p~l~~L~~~Yne~~~~~i~~~~l~~~e~~~~p~L~~le~ngNr~~E~  318 (388)
T COG5238         254 LSNEGVKSVLRRFNEKFVPNLMPLPGDYNERRGGIILDISLNEFEQDAVPLLVDLERNGNRIKEL  318 (388)
T ss_pred             hccccHHHHHHHhhhhcCCCccccccchhhhcCceeeeechhhhhhcccHHHHHHHHccCcchhH
Confidence            554433322      12566666666666311    11111112  2467777777777777664

>PF14580 LRR_9: Leucine-rich repeat; PDB: 2JE1_D 2JE0_A 2JQD_A

Probab=98.88  E-value=4.9e-10  Score=90.43  Aligned_cols=110  Identities=28%  Similarity=0.368  Sum_probs=44.5

Q ss_pred             CCCCCcEEEccCCCCCHHHHHHHh-cCCCCCEeecCCCCCChhHHHHhHcCCCCCeeeeCCCCCCHHHHHHHhcCCCCCe
Q 012186          346 GLSSLKSLNLDARQITDTGLAALT-SLTGLTHLDLFGARITDSGAAYLRNFKNLRSLEICGGGLTDAGVKHIKDLSSLTL  424 (469)
Q Consensus       346 ~~~~L~~L~l~~~~~~~~~~~~l~-~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~  424 (469)
                      +..+++.|++.++.++..  ..+. .+.+|+.|++++|.++..  +.+..++.|+.|++++|.++.........+|+|++
T Consensus        17 n~~~~~~L~L~~n~I~~I--e~L~~~l~~L~~L~Ls~N~I~~l--~~l~~L~~L~~L~L~~N~I~~i~~~l~~~lp~L~~   92 (175)
T PF14580_consen   17 NPVKLRELNLRGNQISTI--ENLGATLDKLEVLDLSNNQITKL--EGLPGLPRLKTLDLSNNRISSISEGLDKNLPNLQE   92 (175)
T ss_dssp             ---------------------S--TT-TT--EEE-TTS--S----TT----TT--EEE--SS---S-CHHHHHH-TT--E
T ss_pred             cccccccccccccccccc--cchhhhhcCCCEEECCCCCCccc--cCccChhhhhhcccCCCCCCccccchHHhCCcCCE
Confidence            345789999999999874  4454 578999999999999974  35777999999999999999874432246899999


Q ss_pred             eeccCCCCCChh-HHHHHHhCcccccccccCCCCCHH
Q 012186          425 LNLSQNCNLTDK-TLELISGLTGLVSLNVSNSRITSA  460 (469)
Q Consensus       425 L~l~~~~~l~~~-~~~~l~~l~~L~~L~l~~~~~~~~  460 (469)
                      |++++| .+... ....+..+|+|+.|++.+|++++.
T Consensus        93 L~L~~N-~I~~l~~l~~L~~l~~L~~L~L~~NPv~~~  128 (175)
T PF14580_consen   93 LYLSNN-KISDLNELEPLSSLPKLRVLSLEGNPVCEK  128 (175)
T ss_dssp             EE-TTS----SCCCCGGGGG-TT--EEE-TT-GGGGS
T ss_pred             EECcCC-cCCChHHhHHHHcCCCcceeeccCCcccch
Confidence            999999 55443 224577899999999999999864

>KOG1259 consensus Nischarin, modulator of integrin alpha5 subunit action [Signal transduction mechanisms; Cytoskeleton]

Probab=98.81  E-value=1.4e-09  Score=92.11  Aligned_cols=131  Identities=26%  Similarity=0.293  Sum_probs=100.7

Q ss_pred             CCCCCCEEEecccccChhhhhhccCCCCCCeeeccCCCCchhhHHhhhcCCCCcEEECCCCCCChhHHHHhhcCCCccEE
Q 012186          178 GLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACLDSLSALGSLFYLNLNRCQLSDDGCEKFSKIGSLKVL  257 (469)
Q Consensus       178 ~~~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L  257 (469)
                      ..+.|+.+++++|.++.. .....-.|+++.|+++.|.+...  ..++.+++|+.|++++|.+... ...-..+.+++.|
T Consensus       282 TWq~LtelDLS~N~I~~i-DESvKL~Pkir~L~lS~N~i~~v--~nLa~L~~L~~LDLS~N~Ls~~-~Gwh~KLGNIKtL  357 (490)
T KOG1259|consen  282 TWQELTELDLSGNLITQI-DESVKLAPKLRRLILSQNRIRTV--QNLAELPQLQLLDLSGNLLAEC-VGWHLKLGNIKTL  357 (490)
T ss_pred             hHhhhhhccccccchhhh-hhhhhhccceeEEeccccceeee--hhhhhcccceEeecccchhHhh-hhhHhhhcCEeee
Confidence            345688899999888753 23456678999999999988774  4488899999999999887652 2233567899999


Q ss_pred             EccCCCCchHHHHHhhCCCCCCEEecCCCCCChH-HHHHhhCCCCCCEEeccCCCCCh
Q 012186          258 NLGFNEITDECLVHLKGLTNLESLNLDSCGIGDE-GLVNLTGLCNLKCLELSDTQVGS  314 (469)
Q Consensus       258 ~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~-~~~~~~~~~~L~~L~l~~~~~~~  314 (469)
                      .+.+|.+..  .+.+..+-+|..|++.+|++... ....++++|-|+.+.+.+|++..
T Consensus       358 ~La~N~iE~--LSGL~KLYSLvnLDl~~N~Ie~ldeV~~IG~LPCLE~l~L~~NPl~~  413 (490)
T KOG1259|consen  358 KLAQNKIET--LSGLRKLYSLVNLDLSSNQIEELDEVNHIGNLPCLETLRLTGNPLAG  413 (490)
T ss_pred             ehhhhhHhh--hhhhHhhhhheeccccccchhhHHHhcccccccHHHHHhhcCCCccc
Confidence            999988753  45677788899999999987542 34458899999999999997654

>KOG3665 consensus ZYG-1-like serine/threonine protein kinases [General function prediction only]

Probab=98.75  E-value=3.9e-08  Score=97.18  Aligned_cols=141  Identities=26%  Similarity=0.367  Sum_probs=77.8

Q ss_pred             CCCcEEecccC-CCCchHHHhhhC-CCCCcEEEccCCCCCHHHH-HHHhcCCCCCEeecCCCCCChhHHHHhHcCCCCCe
Q 012186          324 TNLESINLSFT-GISDGSLRKLAG-LSSLKSLNLDARQITDTGL-AALTSLTGLTHLDLFGARITDSGAAYLRNFKNLRS  400 (469)
Q Consensus       324 ~~L~~L~l~~~-~~~~~~~~~~~~-~~~L~~L~l~~~~~~~~~~-~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~  400 (469)
                      .+|+.|++++. .+...++..++. +|+|++|.+++-.+....+ ....++|+|..||+++..++..  ..+..+++|++
T Consensus       122 ~nL~~LdI~G~~~~s~~W~~kig~~LPsL~sL~i~~~~~~~~dF~~lc~sFpNL~sLDIS~TnI~nl--~GIS~LknLq~  199 (699)
T KOG3665|consen  122 QNLQHLDISGSELFSNGWPKKIGTMLPSLRSLVISGRQFDNDDFSQLCASFPNLRSLDISGTNISNL--SGISRLKNLQV  199 (699)
T ss_pred             HhhhhcCccccchhhccHHHHHhhhCcccceEEecCceecchhHHHHhhccCccceeecCCCCccCc--HHHhccccHHH
Confidence            45666666664 233334444443 5667766666654443322 2334666777777776666653  45556666666


Q ss_pred             eeeCCCCCCH-HHHHHHhcCCCCCeeeccCCCCCChh-HHH-HH---HhCcccccccccCCCCCHHHHHhhh
Q 012186          401 LEICGGGLTD-AGVKHIKDLSSLTLLNLSQNCNLTDK-TLE-LI---SGLTGLVSLNVSNSRITSAGLRHLN  466 (469)
Q Consensus       401 L~l~~~~~~~-~~~~~l~~~~~L~~L~l~~~~~l~~~-~~~-~l---~~l~~L~~L~l~~~~~~~~~~~~l~  466 (469)
                      |.+.+-.+.. .....+..+++|+.||+|.-.+.... ... .+   ..+|.||.||.++..+++..++.+-
T Consensus       200 L~mrnLe~e~~~~l~~LF~L~~L~vLDIS~~~~~~~~~ii~qYlec~~~LpeLrfLDcSgTdi~~~~le~ll  271 (699)
T KOG3665|consen  200 LSMRNLEFESYQDLIDLFNLKKLRVLDISRDKNNDDTKIIEQYLECGMVLPELRFLDCSGTDINEEILEELL  271 (699)
T ss_pred             HhccCCCCCchhhHHHHhcccCCCeeeccccccccchHHHHHHHHhcccCccccEEecCCcchhHHHHHHHH
Confidence            6666655543 22334455667777777766433332 111 11   2356777777777766666655543

>COG5238 RNA1 Ran GTPase-activating protein (RanGAP) involved in mRNA processing and transport [Signal transduction mechanisms / RNA processing and modification]

Probab=98.72  E-value=2.8e-07  Score=77.26  Aligned_cols=182  Identities=23%  Similarity=0.229  Sum_probs=91.0

Q ss_pred             hcCCCccEEEccCCCCchHHHHHhh----CCCCCCEEecCCCC---CChH-------HHHHhhCCCCCCEEeccCCCCCh
Q 012186          249 SKIGSLKVLNLGFNEITDECLVHLK----GLTNLESLNLDSCG---IGDE-------GLVNLTGLCNLKCLELSDTQVGS  314 (469)
Q Consensus       249 ~~~~~L~~L~l~~~~~~~~~~~~~~----~l~~L~~L~l~~~~---~~~~-------~~~~~~~~~~L~~L~l~~~~~~~  314 (469)
                      ..+..+..+++++|.+......++.    +-.+|+..+++.--   ..+.       ...++..||+|+..++++|.++.
T Consensus        27 ~~~d~~~evdLSGNtigtEA~e~l~~~ia~~~~L~vvnfsd~ftgr~kde~~~~L~~Ll~aLlkcp~l~~v~LSDNAfg~  106 (388)
T COG5238          27 EMMDELVEVDLSGNTIGTEAMEELCNVIANVRNLRVVNFSDAFTGRDKDELYSNLVMLLKALLKCPRLQKVDLSDNAFGS  106 (388)
T ss_pred             HhhcceeEEeccCCcccHHHHHHHHHHHhhhcceeEeehhhhhhcccHHHHHHHHHHHHHHHhcCCcceeeeccccccCc
Confidence            3355555666666655544444432    22344444444321   1111       12345577777777777776655


Q ss_pred             hhHHH----hhCCCCCcEEecccCCCCchHHHhh-------------hCCCCCcEEEccCCCCCHHHH----HHHhcCCC
Q 012186          315 SGLRH----LSGLTNLESINLSFTGISDGSLRKL-------------AGLSSLKSLNLDARQITDTGL----AALTSLTG  373 (469)
Q Consensus       315 ~~~~~----~~~~~~L~~L~l~~~~~~~~~~~~~-------------~~~~~L~~L~l~~~~~~~~~~----~~l~~~~~  373 (469)
                      ..+..    ++.-..|++|.+++|.+....-..+             +.-|.|+.+....|.+..-+.    ..+....+
T Consensus       107 ~~~e~L~d~is~~t~l~HL~l~NnGlGp~aG~rigkal~~la~nKKaa~kp~Le~vicgrNRlengs~~~~a~~l~sh~~  186 (388)
T COG5238         107 EFPEELGDLISSSTDLVHLKLNNNGLGPIAGGRIGKALFHLAYNKKAADKPKLEVVICGRNRLENGSKELSAALLESHEN  186 (388)
T ss_pred             ccchHHHHHHhcCCCceeEEeecCCCCccchhHHHHHHHHHHHHhhhccCCCceEEEeccchhccCcHHHHHHHHHhhcC
Confidence            44333    3456777777777776543222111             123566666666555443211    22223345


Q ss_pred             CCEeecCCCCCChhHHH-----HhHcCCCCCeeeeCCCCCCHHHHHHHhc----CCCCCeeeccCC
Q 012186          374 LTHLDLFGARITDSGAA-----YLRNFKNLRSLEICGGGLTDAGVKHIKD----LSSLTLLNLSQN  430 (469)
Q Consensus       374 L~~L~l~~~~~~~~~~~-----~~~~~~~L~~L~l~~~~~~~~~~~~l~~----~~~L~~L~l~~~  430 (469)
                      |+++.+..|.|...+..     .+..+.+|++|+++.|-++..+...++.    -+.|+.|.+.+|
T Consensus       187 lk~vki~qNgIrpegv~~L~~~gl~y~~~LevLDlqDNtft~~gS~~La~al~~W~~lrEL~lnDC  252 (388)
T COG5238         187 LKEVKIQQNGIRPEGVTMLAFLGLFYSHSLEVLDLQDNTFTLEGSRYLADALCEWNLLRELRLNDC  252 (388)
T ss_pred             ceeEEeeecCcCcchhHHHHHHHHHHhCcceeeeccccchhhhhHHHHHHHhcccchhhhccccch
Confidence            66666666655543322     1234556666666666555443333321    234566666666

>PLN03150 hypothetical protein; Provisional

Probab=98.71  E-value=1.8e-08  Score=99.90  Aligned_cols=105  Identities=23%  Similarity=0.273  Sum_probs=48.2

Q ss_pred             CcEEecccCCCCchHHHhhhCCCCCcEEEccCCCCCHHHHHHHhcCCCCCEeecCCCCCChhHHHHhHcCCCCCeeeeCC
Q 012186          326 LESINLSFTGISDGSLRKLAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLFGARITDSGAAYLRNFKNLRSLEICG  405 (469)
Q Consensus       326 L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~  405 (469)
                      ++.|+++++.+....+..+..+++|+.|++++|.+.+..+..+..+++|+.|++++|.+++.+|..+..+++|+.|++++
T Consensus       420 v~~L~L~~n~L~g~ip~~i~~L~~L~~L~Ls~N~l~g~iP~~~~~l~~L~~LdLs~N~lsg~iP~~l~~L~~L~~L~Ls~  499 (623)
T PLN03150        420 IDGLGLDNQGLRGFIPNDISKLRHLQSINLSGNSIRGNIPPSLGSITSLEVLDLSYNSFNGSIPESLGQLTSLRILNLNG  499 (623)
T ss_pred             EEEEECCCCCccccCCHHHhCCCCCCEEECCCCcccCcCChHHhCCCCCCEEECCCCCCCCCCchHHhcCCCCCEEECcC
Confidence            34444444444444444444444444444444444443344444444444444444444444444444444444444444


Q ss_pred             CCCCHHHHHHHhcC-CCCCeeeccCC
Q 012186          406 GGLTDAGVKHIKDL-SSLTLLNLSQN  430 (469)
Q Consensus       406 ~~~~~~~~~~l~~~-~~L~~L~l~~~  430 (469)
                      |.+++..|..+... .++..+++.+|
T Consensus       500 N~l~g~iP~~l~~~~~~~~~l~~~~N  525 (623)
T PLN03150        500 NSLSGRVPAALGGRLLHRASFNFTDN  525 (623)
T ss_pred             CcccccCChHHhhccccCceEEecCC
Confidence            44444444444321 23344444444

>PF13855 LRR_8: Leucine rich repeat; PDB: 2O6S_A 3A79_B 3RFS_A 3G39_A 3VQ2_A 3VQ1_B 2Z64_A 2Z66_C 3FXI_A 2Z63_A

Probab=98.67  E-value=1.5e-09  Score=71.89  Aligned_cols=59  Identities=29%  Similarity=0.447  Sum_probs=35.6

Q ss_pred             CCCCEeecCCCCCChhHHHHhHcCCCCCeeeeCCCCCCHHHHHHHhcCCCCCeeeccCC
Q 012186          372 TGLTHLDLFGARITDSGAAYLRNFKNLRSLEICGGGLTDAGVKHIKDLSSLTLLNLSQN  430 (469)
Q Consensus       372 ~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~  430 (469)
                      |+|++|++++|+++...+.++..+++|+.|++++|.++...+..|.++++|++|++++|
T Consensus         1 p~L~~L~l~~n~l~~i~~~~f~~l~~L~~L~l~~N~l~~i~~~~f~~l~~L~~L~l~~N   59 (61)
T PF13855_consen    1 PNLESLDLSNNKLTEIPPDSFSNLPNLETLDLSNNNLTSIPPDAFSNLPNLRYLDLSNN   59 (61)
T ss_dssp             TTESEEEETSSTESEECTTTTTTGTTESEEEETSSSESEEETTTTTTSTTESEEEETSS
T ss_pred             CcCcEEECCCCCCCccCHHHHcCCCCCCEeEccCCccCccCHHHHcCCCCCCEEeCcCC
Confidence            45566666666666555555566666666666666666555555556666666666655

...

>PLN03150 hypothetical protein; Provisional

Probab=98.67  E-value=3.9e-08  Score=97.49  Aligned_cols=107  Identities=21%  Similarity=0.302  Sum_probs=87.8

Q ss_pred             CCcEEEccCCCCCHHHHHHHhcCCCCCEeecCCCCCChhHHHHhHcCCCCCeeeeCCCCCCHHHHHHHhcCCCCCeeecc
Q 012186          349 SLKSLNLDARQITDTGLAALTSLTGLTHLDLFGARITDSGAAYLRNFKNLRSLEICGGGLTDAGVKHIKDLSSLTLLNLS  428 (469)
Q Consensus       349 ~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~  428 (469)
                      .++.|+++++.+.+..+..+..+++|+.|++++|.+.+.+|..+..+++|+.|++++|++++..|..++.+++|+.|+++
T Consensus       419 ~v~~L~L~~n~L~g~ip~~i~~L~~L~~L~Ls~N~l~g~iP~~~~~l~~L~~LdLs~N~lsg~iP~~l~~L~~L~~L~Ls  498 (623)
T PLN03150        419 FIDGLGLDNQGLRGFIPNDISKLRHLQSINLSGNSIRGNIPPSLGSITSLEVLDLSYNSFNGSIPESLGQLTSLRILNLN  498 (623)
T ss_pred             EEEEEECCCCCccccCCHHHhCCCCCCEEECCCCcccCcCChHHhCCCCCCEEECCCCCCCCCCchHHhcCCCCCEEECc
Confidence            37788888888887777788888999999999998888888888888999999999998888888888888999999999


Q ss_pred             CCCCCChhHHHHHHhC-cccccccccCCC
Q 012186          429 QNCNLTDKTLELISGL-TGLVSLNVSNSR  456 (469)
Q Consensus       429 ~~~~l~~~~~~~l~~l-~~L~~L~l~~~~  456 (469)
                      +| .+....|..+... .++..+++.+|+
T Consensus       499 ~N-~l~g~iP~~l~~~~~~~~~l~~~~N~  526 (623)
T PLN03150        499 GN-SLSGRVPAALGGRLLHRASFNFTDNA  526 (623)
T ss_pred             CC-cccccCChHHhhccccCceEEecCCc
Confidence            98 6777777777653 456677777654

>PF13855 LRR_8: Leucine rich repeat; PDB: 2O6S_A 3A79_B 3RFS_A 3G39_A 3VQ2_A 3VQ1_B 2Z64_A 2Z66_C 3FXI_A 2Z63_A

Probab=98.64  E-value=3.6e-09  Score=70.06  Aligned_cols=60  Identities=35%  Similarity=0.486  Sum_probs=34.3

Q ss_pred             CCCeeeeCCCCCCHHHHHHHhcCCCCCeeeccCCCCCChhHHHHHHhCcccccccccCCCC
Q 012186          397 NLRSLEICGGGLTDAGVKHIKDLSSLTLLNLSQNCNLTDKTLELISGLTGLVSLNVSNSRI  457 (469)
Q Consensus       397 ~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~l~~~~~~~l~~l~~L~~L~l~~~~~  457 (469)
                      +|+.|++++|+++...+..|.++++|++|++++| .+....+..+.++++|+.|++++|++
T Consensus         2 ~L~~L~l~~n~l~~i~~~~f~~l~~L~~L~l~~N-~l~~i~~~~f~~l~~L~~L~l~~N~l   61 (61)
T PF13855_consen    2 NLESLDLSNNKLTEIPPDSFSNLPNLETLDLSNN-NLTSIPPDAFSNLPNLRYLDLSNNNL   61 (61)
T ss_dssp             TESEEEETSSTESEECTTTTTTGTTESEEEETSS-SESEEETTTTTTSTTESEEEETSSSB
T ss_pred             cCcEEECCCCCCCccCHHHHcCCCCCCEeEccCC-ccCccCHHHHcCCCCCCEEeCcCCcC
Confidence            4555566665555554455555556666666655 55555555555556666666655543

...

>COG4886 Leucine-rich repeat (LRR) protein [Function unknown]

Probab=98.58  E-value=3.3e-08  Score=93.60  Aligned_cols=197  Identities=30%  Similarity=0.380  Sum_probs=124.6

Q ss_pred             EEECCCCCCChhHHHHhhcCCCccEEEccCCCCchHHHHHhhCCC-CCCEEecCCCCCChHHHHHhhCCCCCCEEeccCC
Q 012186          232 YLNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLT-NLESLNLDSCGIGDEGLVNLTGLCNLKCLELSDT  310 (469)
Q Consensus       232 ~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~-~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~  310 (469)
                      .+....+.+.... ..+...+.++.+++.++.++.. +....... +|+.|+++++.+.... ..+..+++|+.|++++|
T Consensus        97 ~l~~~~~~~~~~~-~~~~~~~~l~~L~l~~n~i~~i-~~~~~~~~~nL~~L~l~~N~i~~l~-~~~~~l~~L~~L~l~~N  173 (394)
T COG4886          97 SLDLNLNRLRSNI-SELLELTNLTSLDLDNNNITDI-PPLIGLLKSNLKELDLSDNKIESLP-SPLRNLPNLKNLDLSFN  173 (394)
T ss_pred             eeeccccccccCc-hhhhcccceeEEecCCcccccC-ccccccchhhcccccccccchhhhh-hhhhccccccccccCCc
Confidence            4566665542222 2334457788888888777643 33444443 7888888888775432 34667788888888888


Q ss_pred             CCChhhHHHhhCCCCCcEEecccCCCCchHHHhhhCCCCCcEEEccCCCCCHHHHHHHhcCCCCCEeecCCCCCChhHHH
Q 012186          311 QVGSSGLRHLSGLTNLESINLSFTGISDGSLRKLAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLFGARITDSGAA  390 (469)
Q Consensus       311 ~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~  390 (469)
                      ++..... ..+..+.|+.|.++++.+.+.... ......|+++.+++|..... +..+..+.++..+.+.+|++... +.
T Consensus       174 ~l~~l~~-~~~~~~~L~~L~ls~N~i~~l~~~-~~~~~~L~~l~~~~N~~~~~-~~~~~~~~~l~~l~l~~n~~~~~-~~  249 (394)
T COG4886         174 DLSDLPK-LLSNLSNLNNLDLSGNKISDLPPE-IELLSALEELDLSNNSIIEL-LSSLSNLKNLSGLELSNNKLEDL-PE  249 (394)
T ss_pred             hhhhhhh-hhhhhhhhhheeccCCccccCchh-hhhhhhhhhhhhcCCcceec-chhhhhcccccccccCCceeeec-cc
Confidence            7765432 223677788888888877664332 22334577777777743222 34455667777777777766653 45


Q ss_pred             HhHcCCCCCeeeeCCCCCCHHHHHHHhcCCCCCeeeccCCCCCChhHH
Q 012186          391 YLRNFKNLRSLEICGGGLTDAGVKHIKDLSSLTLLNLSQNCNLTDKTL  438 (469)
Q Consensus       391 ~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~l~~~~~  438 (469)
                      .+..++.++.|++++|.++....  ++...+++.|+++++ .+....+
T Consensus       250 ~~~~l~~l~~L~~s~n~i~~i~~--~~~~~~l~~L~~s~n-~~~~~~~  294 (394)
T COG4886         250 SIGNLSNLETLDLSNNQISSISS--LGSLTNLRELDLSGN-SLSNALP  294 (394)
T ss_pred             hhccccccceecccccccccccc--ccccCccCEEeccCc-cccccch
Confidence            56667778888888887777644  666777888888877 4444443

>KOG1859 consensus Leucine-rich repeat proteins [General function prediction only]

Probab=98.57  E-value=8.7e-09  Score=97.57  Aligned_cols=176  Identities=25%  Similarity=0.302  Sum_probs=118.1

Q ss_pred             hhCCCCCCEEecCCCCCChHHHHHhhCC-CCCCEEeccCCCCChhhHHHhh----------CCCCCcEEecccCCCCchH
Q 012186          272 LKGLTNLESLNLDSCGIGDEGLVNLTGL-CNLKCLELSDTQVGSSGLRHLS----------GLTNLESINLSFTGISDGS  340 (469)
Q Consensus       272 ~~~l~~L~~L~l~~~~~~~~~~~~~~~~-~~L~~L~l~~~~~~~~~~~~~~----------~~~~L~~L~l~~~~~~~~~  340 (469)
                      +..+..|+.|.+.+|.+..  ...+..+ ..|++|...+. ... ....|.          ...+|...+.++|.+... 
T Consensus       105 ifpF~sLr~LElrg~~L~~--~~GL~~lr~qLe~LIC~~S-l~A-l~~v~ascggd~~ns~~Wn~L~~a~fsyN~L~~m-  179 (1096)
T KOG1859|consen  105 IFPFRSLRVLELRGCDLST--AKGLQELRHQLEKLICHNS-LDA-LRHVFASCGGDISNSPVWNKLATASFSYNRLVLM-  179 (1096)
T ss_pred             eccccceeeEEecCcchhh--hhhhHHHHHhhhhhhhhcc-HHH-HHHHHHHhccccccchhhhhHhhhhcchhhHHhH-
Confidence            4456688888888887643  1222211 24554443322 111 111111          123566677777765432 


Q ss_pred             HHhhhCCCCCcEEEccCCCCCHHHHHHHhcCCCCCEeecCCCCCChhHHHHhHcCCCCCeeeeCCCCCCHHHHHHHhcCC
Q 012186          341 LRKLAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLFGARITDSGAAYLRNFKNLRSLEICGGGLTDAGVKHIKDLS  420 (469)
Q Consensus       341 ~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~  420 (469)
                      ...+.-++.|++|+++.|+++..  +.+..|++|++|||+.|.+....--....+. |+.|.+++|.++..  ..+.++.
T Consensus       180 D~SLqll~ale~LnLshNk~~~v--~~Lr~l~~LkhLDlsyN~L~~vp~l~~~gc~-L~~L~lrnN~l~tL--~gie~Lk  254 (1096)
T KOG1859|consen  180 DESLQLLPALESLNLSHNKFTKV--DNLRRLPKLKHLDLSYNCLRHVPQLSMVGCK-LQLLNLRNNALTTL--RGIENLK  254 (1096)
T ss_pred             HHHHHHHHHhhhhccchhhhhhh--HHHHhcccccccccccchhccccccchhhhh-heeeeecccHHHhh--hhHHhhh
Confidence            23455568999999999999985  5788999999999999987764333333455 99999999998875  4677899


Q ss_pred             CCCeeeccCCCCCChh-HHHHHHhCcccccccccCCCCC
Q 012186          421 SLTLLNLSQNCNLTDK-TLELISGLTGLVSLNVSNSRIT  458 (469)
Q Consensus       421 ~L~~L~l~~~~~l~~~-~~~~l~~l~~L~~L~l~~~~~~  458 (469)
                      +|+.|+++.| .+.+. -.+.+..+.+|+.|+|.||++.
T Consensus       255 sL~~LDlsyN-ll~~hseL~pLwsLs~L~~L~LeGNPl~  292 (1096)
T KOG1859|consen  255 SLYGLDLSYN-LLSEHSELEPLWSLSSLIVLWLEGNPLC  292 (1096)
T ss_pred             hhhccchhHh-hhhcchhhhHHHHHHHHHHHhhcCCccc
Confidence            9999999999 33332 2344667889999999999975

>COG4886 Leucine-rich repeat (LRR) protein [Function unknown]

Probab=98.54  E-value=7.4e-08  Score=91.17  Aligned_cols=201  Identities=27%  Similarity=0.370  Sum_probs=146.6

Q ss_pred             CeeeccCCCCchhhHHhhhcCCCCcEEECCCCCCChhHHHHhhcC-CCccEEEccCCCCchHHHHHhhCCCCCCEEecCC
Q 012186          207 TLLNLEGCPVTAACLDSLSALGSLFYLNLNRCQLSDDGCEKFSKI-GSLKVLNLGFNEITDECLVHLKGLTNLESLNLDS  285 (469)
Q Consensus       207 ~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~-~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~  285 (469)
                      ..+....+.+... ...+...+.++.+.+.++.+.... ...... ++|+.|+++++.+.. .+..+..+++|+.|+++.
T Consensus        96 ~~l~~~~~~~~~~-~~~~~~~~~l~~L~l~~n~i~~i~-~~~~~~~~nL~~L~l~~N~i~~-l~~~~~~l~~L~~L~l~~  172 (394)
T COG4886          96 PSLDLNLNRLRSN-ISELLELTNLTSLDLDNNNITDIP-PLIGLLKSNLKELDLSDNKIES-LPSPLRNLPNLKNLDLSF  172 (394)
T ss_pred             ceeeccccccccC-chhhhcccceeEEecCCcccccCc-cccccchhhcccccccccchhh-hhhhhhccccccccccCC
Confidence            3566666665332 334455688999999998877643 333445 389999999998874 335678899999999999


Q ss_pred             CCCChHHHHHhhCCCCCCEEeccCCCCChhhHHHhhCCCCCcEEecccCCCCchHHHhhhCCCCCcEEEccCCCCCHHHH
Q 012186          286 CGIGDEGLVNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISDGSLRKLAGLSSLKSLNLDARQITDTGL  365 (469)
Q Consensus       286 ~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~  365 (469)
                      |.+..... ..+..+.|+.|+++++.+..... .......|+.+.++++.... .+..+..++++..+.+.++++... +
T Consensus       173 N~l~~l~~-~~~~~~~L~~L~ls~N~i~~l~~-~~~~~~~L~~l~~~~N~~~~-~~~~~~~~~~l~~l~l~~n~~~~~-~  248 (394)
T COG4886         173 NDLSDLPK-LLSNLSNLNNLDLSGNKISDLPP-EIELLSALEELDLSNNSIIE-LLSSLSNLKNLSGLELSNNKLEDL-P  248 (394)
T ss_pred             chhhhhhh-hhhhhhhhhheeccCCccccCch-hhhhhhhhhhhhhcCCccee-cchhhhhcccccccccCCceeeec-c
Confidence            98865433 33377899999999998876443 23445569999999885322 234566778888888888877653 4


Q ss_pred             HHHhcCCCCCEeecCCCCCChhHHHHhHcCCCCCeeeeCCCCCCHHHHHHH
Q 012186          366 AALTSLTGLTHLDLFGARITDSGAAYLRNFKNLRSLEICGGGLTDAGVKHI  416 (469)
Q Consensus       366 ~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l  416 (469)
                      ..+..+++++.|++++|.++....  +....+++.|+++++.+....+...
T Consensus       249 ~~~~~l~~l~~L~~s~n~i~~i~~--~~~~~~l~~L~~s~n~~~~~~~~~~  297 (394)
T COG4886         249 ESIGNLSNLETLDLSNNQISSISS--LGSLTNLRELDLSGNSLSNALPLIA  297 (394)
T ss_pred             chhccccccceecccccccccccc--ccccCccCEEeccCccccccchhhh
Confidence            566788889999999999888654  7788999999999998887655544

>KOG3665 consensus ZYG-1-like serine/threonine protein kinases [General function prediction only]

Probab=98.50  E-value=1.5e-07  Score=93.19  Aligned_cols=137  Identities=24%  Similarity=0.244  Sum_probs=68.7

Q ss_pred             CCCCEEecCCCcccChhHhHhhh-CCCCCCEEeCCCCCcCcHHHHHHHhCCCCCCEEecccccccccccccccCCCCccE
Q 012186           81 SNLQSLDFNFCIQISDGGLEHLR-GLSNLTSLSFRRNNAITAQGMKAFAGLINLVKLDLERCTRIHGGLVNLKGLMKLES  159 (469)
Q Consensus        81 ~~L~~L~l~~~~~~~~~~~~~l~-~~~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~  159 (469)
                      .+|+.|+++|...+....+..++ .+|.|+.|.+.+-.+..+.......++++|+.||++++. +... ..++++++|++
T Consensus       122 ~nL~~LdI~G~~~~s~~W~~kig~~LPsL~sL~i~~~~~~~~dF~~lc~sFpNL~sLDIS~Tn-I~nl-~GIS~LknLq~  199 (699)
T KOG3665|consen  122 QNLQHLDISGSELFSNGWPKKIGTMLPSLRSLVISGRQFDNDDFSQLCASFPNLRSLDISGTN-ISNL-SGISRLKNLQV  199 (699)
T ss_pred             HhhhhcCccccchhhccHHHHHhhhCcccceEEecCceecchhHHHHhhccCccceeecCCCC-ccCc-HHHhccccHHH
Confidence            35666666654444444444443 355666666665444344444444556666666666532 2211 34555666666


Q ss_pred             EEccCCCCCChhhhhcccCCCCCCEEEecccccChhh------hhhccCCCCCCeeeccCCCCchh
Q 012186          160 LNIKWCNCITDSDMKPLSGLTNLKSLQISCSKVTDSG------IAYLKGLQKLTLLNLEGCPVTAA  219 (469)
Q Consensus       160 L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~------~~~l~~l~~L~~L~l~~~~~~~~  219 (469)
                      |.+.+-.........++..+++|+.||++........      ...-..+|+|+.|+.+++.+...
T Consensus       200 L~mrnLe~e~~~~l~~LF~L~~L~vLDIS~~~~~~~~~ii~qYlec~~~LpeLrfLDcSgTdi~~~  265 (699)
T KOG3665|consen  200 LSMRNLEFESYQDLIDLFNLKKLRVLDISRDKNNDDTKIIEQYLECGMVLPELRFLDCSGTDINEE  265 (699)
T ss_pred             HhccCCCCCchhhHHHHhcccCCCeeeccccccccchHHHHHHHHhcccCccccEEecCCcchhHH
Confidence            6665544333344455556666666666543222111      11113455666666666555443

>KOG0532 consensus Leucine-rich repeat (LRR) protein, contains calponin homology domain [Cytoskeleton]

Probab=98.47  E-value=3.6e-09  Score=97.33  Aligned_cols=188  Identities=23%  Similarity=0.230  Sum_probs=111.4

Q ss_pred             EECCCCCCChhHHHHhhcCCCccEEEccCCCCchHHHHHhhCCCCCCEEecCCCCCChHHHHHhhCCCCCCEEeccCCCC
Q 012186          233 LNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNLDSCGIGDEGLVNLTGLCNLKCLELSDTQV  312 (469)
Q Consensus       233 L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~  312 (469)
                      .+++.|.+.. .+..+..+-.|+.+.++.|.+. ..+..+.++..|+.++++.|.+... +..++.+| |+.|.+++|.+
T Consensus        80 aDlsrNR~~e-lp~~~~~f~~Le~liLy~n~~r-~ip~~i~~L~~lt~l~ls~NqlS~l-p~~lC~lp-Lkvli~sNNkl  155 (722)
T KOG0532|consen   80 ADLSRNRFSE-LPEEACAFVSLESLILYHNCIR-TIPEAICNLEALTFLDLSSNQLSHL-PDGLCDLP-LKVLIVSNNKL  155 (722)
T ss_pred             hhcccccccc-CchHHHHHHHHHHHHHHhccce-ecchhhhhhhHHHHhhhccchhhcC-ChhhhcCc-ceeEEEecCcc
Confidence            3444444433 2233334445555555555544 2344555666666666666655432 22344443 66666666665


Q ss_pred             ChhhHHHhhCCCCCcEEecccCCCCchHHHhhhCCCCCcEEEccCCCCCHHHHHHHhcCCCCCEeecCCCCCChhHHHHh
Q 012186          313 GSSGLRHLSGLTNLESINLSFTGISDGSLRKLAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLFGARITDSGAAYL  392 (469)
Q Consensus       313 ~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~  392 (469)
                      .. .+..++..++|..|+.+.|.+.. .+..++.+.+|+.|.+..|.+...+ ..+. .-.|.+||+++|+++. +|..|
T Consensus       156 ~~-lp~~ig~~~tl~~ld~s~nei~s-lpsql~~l~slr~l~vrRn~l~~lp-~El~-~LpLi~lDfScNkis~-iPv~f  230 (722)
T KOG0532|consen  156 TS-LPEEIGLLPTLAHLDVSKNEIQS-LPSQLGYLTSLRDLNVRRNHLEDLP-EELC-SLPLIRLDFSCNKISY-LPVDF  230 (722)
T ss_pred             cc-CCcccccchhHHHhhhhhhhhhh-chHHhhhHHHHHHHHHhhhhhhhCC-HHHh-CCceeeeecccCceee-cchhh
Confidence            54 34445566677777777776654 3445666677777777777766653 3333 3347778888887776 46677


Q ss_pred             HcCCCCCeeeeCCCCCCHHHHHHH---hcCCCCCeeeccCC
Q 012186          393 RNFKNLRSLEICGGGLTDAGVKHI---KDLSSLTLLNLSQN  430 (469)
Q Consensus       393 ~~~~~L~~L~l~~~~~~~~~~~~l---~~~~~L~~L~l~~~  430 (469)
                      .+++.||+|.+.+|.++.. |..+   +..--.++|+++-|
T Consensus       231 r~m~~Lq~l~LenNPLqSP-PAqIC~kGkVHIFKyL~~qA~  270 (722)
T KOG0532|consen  231 RKMRHLQVLQLENNPLQSP-PAQICEKGKVHIFKYLSTQAC  270 (722)
T ss_pred             hhhhhheeeeeccCCCCCC-hHHHHhccceeeeeeecchhc
Confidence            7788888888888877764 3333   33344677777777

>KOG2982 consensus Uncharacterized conserved protein [Function unknown]

Probab=98.43  E-value=1.5e-07  Score=79.86  Aligned_cols=202  Identities=19%  Similarity=0.174  Sum_probs=116.1

Q ss_pred             CCcEEECCCCCCChhHH-HHh-hcCCCccEEEccCCCCchH--HHHHhhCCCCCCEEecCCCCCChHHHHHh-hCCCCCC
Q 012186          229 SLFYLNLNRCQLSDDGC-EKF-SKIGSLKVLNLGFNEITDE--CLVHLKGLTNLESLNLDSCGIGDEGLVNL-TGLCNLK  303 (469)
Q Consensus       229 ~L~~L~l~~~~~~~~~~-~~~-~~~~~L~~L~l~~~~~~~~--~~~~~~~l~~L~~L~l~~~~~~~~~~~~~-~~~~~L~  303 (469)
                      .+.-+.+.++.+..+.. ..| ..+..++.+++.+|.+++.  ....+.++|.|+.|+++.|.+..... .+ ....+|+
T Consensus        46 a~ellvln~~~id~~gd~~~~~~~~~~v~elDL~~N~iSdWseI~~ile~lP~l~~LNls~N~L~s~I~-~lp~p~~nl~  124 (418)
T KOG2982|consen   46 ALELLVLNGSIIDNEGDVMLFGSSVTDVKELDLTGNLISDWSEIGAILEQLPALTTLNLSCNSLSSDIK-SLPLPLKNLR  124 (418)
T ss_pred             chhhheecCCCCCcchhHHHHHHHhhhhhhhhcccchhccHHHHHHHHhcCccceEeeccCCcCCCccc-cCcccccceE
Confidence            34455555666554332 223 4567889999999988864  33456788999999999887754322 22 2455888


Q ss_pred             EEeccCCCCChhh-HHHhhCCCCCcEEecccCCCCch--HHHhhh-CCCCCcEEEccCCCCCHHH--HHHHhcCCCCCEe
Q 012186          304 CLELSDTQVGSSG-LRHLSGLTNLESINLSFTGISDG--SLRKLA-GLSSLKSLNLDARQITDTG--LAALTSLTGLTHL  377 (469)
Q Consensus       304 ~L~l~~~~~~~~~-~~~~~~~~~L~~L~l~~~~~~~~--~~~~~~-~~~~L~~L~l~~~~~~~~~--~~~l~~~~~L~~L  377 (469)
                      .|.+.+..+.-.. -..+..+|+++.|.++.|.+...  ...... .-+.++++++..|......  ...-.-+|++..+
T Consensus       125 ~lVLNgT~L~w~~~~s~l~~lP~vtelHmS~N~~rq~n~Dd~c~e~~s~~v~tlh~~~c~~~~w~~~~~l~r~Fpnv~sv  204 (418)
T KOG2982|consen  125 VLVLNGTGLSWTQSTSSLDDLPKVTELHMSDNSLRQLNLDDNCIEDWSTEVLTLHQLPCLEQLWLNKNKLSRIFPNVNSV  204 (418)
T ss_pred             EEEEcCCCCChhhhhhhhhcchhhhhhhhccchhhhhccccccccccchhhhhhhcCCcHHHHHHHHHhHHhhcccchhe
Confidence            8888887654332 23345778888888877732110  001111 1145555655555433211  1112246777777


Q ss_pred             ecCCCCCChhHHH-HhHcCCCCCeeeeCCCCCCH-HHHHHHhcCCCCCeeeccCCC
Q 012186          378 DLFGARITDSGAA-YLRNFKNLRSLEICGGGLTD-AGVKHIKDLSSLTLLNLSQNC  431 (469)
Q Consensus       378 ~l~~~~~~~~~~~-~~~~~~~L~~L~l~~~~~~~-~~~~~l~~~~~L~~L~l~~~~  431 (469)
                      .+..|++.+...+ ....+|.+..|+++.+++.. .....+.+++.|.-|.++++|
T Consensus       205 ~v~e~PlK~~s~ek~se~~p~~~~LnL~~~~idswasvD~Ln~f~~l~dlRv~~~P  260 (418)
T KOG2982|consen  205 FVCEGPLKTESSEKGSEPFPSLSCLNLGANNIDSWASVDALNGFPQLVDLRVSENP  260 (418)
T ss_pred             eeecCcccchhhcccCCCCCcchhhhhcccccccHHHHHHHcCCchhheeeccCCc
Confidence            7777766554322 23445666666666666643 223455666777777777664

>KOG2982 consensus Uncharacterized conserved protein [Function unknown]

Probab=98.42  E-value=2.4e-07  Score=78.67  Aligned_cols=185  Identities=16%  Similarity=0.156  Sum_probs=104.1

Q ss_pred             CCCCCCEEeCCCCCcCc-HHHHHHHhCCCCCCEEecccccccccccccc-cCCCCccEEEccCCCCCChhhhhcccCCCC
Q 012186          104 GLSNLTSLSFRRNNAIT-AQGMKAFAGLINLVKLDLERCTRIHGGLVNL-KGLMKLESLNIKWCNCITDSDMKPLSGLTN  181 (469)
Q Consensus       104 ~~~~L~~L~l~~~~~~~-~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~l-~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~  181 (469)
                      .+..++.+++.+|.+.. ..+...+.++|.|++|+++.|+ ....+..+ ....+|++|.+.|..--.......+..+|.
T Consensus        69 ~~~~v~elDL~~N~iSdWseI~~ile~lP~l~~LNls~N~-L~s~I~~lp~p~~nl~~lVLNgT~L~w~~~~s~l~~lP~  147 (418)
T KOG2982|consen   69 SVTDVKELDLTGNLISDWSEIGAILEQLPALTTLNLSCNS-LSSDIKSLPLPLKNLRVLVLNGTGLSWTQSTSSLDDLPK  147 (418)
T ss_pred             HhhhhhhhhcccchhccHHHHHHHHhcCccceEeeccCCc-CCCccccCcccccceEEEEEcCCCCChhhhhhhhhcchh
Confidence            45667777777665422 2333445577777777777754 22222233 245677888777744333444455567777


Q ss_pred             CCEEEecccccChhhhh--hcc-CCCCCCeeeccCCCCchh--hHHhhhcCCCCcEEECCCCCCChhHH-HHhhcCCCcc
Q 012186          182 LKSLQISCSKVTDSGIA--YLK-GLQKLTLLNLEGCPVTAA--CLDSLSALGSLFYLNLNRCQLSDDGC-EKFSKIGSLK  255 (469)
Q Consensus       182 L~~L~l~~~~~~~~~~~--~l~-~l~~L~~L~l~~~~~~~~--~~~~~~~~~~L~~L~l~~~~~~~~~~-~~~~~~~~L~  255 (469)
                      ++.|+++.|++......  ... --+.+++++..+|....-  ....-..+|++..+-+..|.+..... .....+|.+.
T Consensus       148 vtelHmS~N~~rq~n~Dd~c~e~~s~~v~tlh~~~c~~~~w~~~~~l~r~Fpnv~sv~v~e~PlK~~s~ek~se~~p~~~  227 (418)
T KOG2982|consen  148 VTELHMSDNSLRQLNLDDNCIEDWSTEVLTLHQLPCLEQLWLNKNKLSRIFPNVNSVFVCEGPLKTESSEKGSEPFPSLS  227 (418)
T ss_pred             hhhhhhccchhhhhccccccccccchhhhhhhcCCcHHHHHHHHHhHHhhcccchheeeecCcccchhhcccCCCCCcch
Confidence            88887777744322111  111 223566666666633211  01111235777777777776544332 3345566777


Q ss_pred             EEEccCCCCchH-HHHHhhCCCCCCEEecCCCCCC
Q 012186          256 VLNLGFNEITDE-CLVHLKGLTNLESLNLDSCGIG  289 (469)
Q Consensus       256 ~L~l~~~~~~~~-~~~~~~~l~~L~~L~l~~~~~~  289 (469)
                      .|+++.+++... ..+.+..++.|+.|.++++.+.
T Consensus       228 ~LnL~~~~idswasvD~Ln~f~~l~dlRv~~~Pl~  262 (418)
T KOG2982|consen  228 CLNLGANNIDSWASVDALNGFPQLVDLRVSENPLS  262 (418)
T ss_pred             hhhhcccccccHHHHHHHcCCchhheeeccCCccc
Confidence            777777776543 2345667777888887777554

>KOG1947 consensus Leucine rich repeat proteins, some proteins contain F-box [General function prediction only]

Probab=98.38  E-value=9.7e-07  Score=86.26  Aligned_cols=60  Identities=38%  Similarity=0.506  Sum_probs=25.4

Q ss_pred             CCCccEEEccCCC-CchHHHHHhh-CCCCCCEEecCCCC-CChHHHHHhh-CCCCCCEEeccCC
Q 012186          251 IGSLKVLNLGFNE-ITDECLVHLK-GLTNLESLNLDSCG-IGDEGLVNLT-GLCNLKCLELSDT  310 (469)
Q Consensus       251 ~~~L~~L~l~~~~-~~~~~~~~~~-~l~~L~~L~l~~~~-~~~~~~~~~~-~~~~L~~L~l~~~  310 (469)
                      +++|+.++++++. +++.....+. .+++|+.|.+.+|. +++.....+. .+++|++|+++++
T Consensus       242 ~~~L~~l~l~~~~~isd~~l~~l~~~c~~L~~L~l~~c~~lt~~gl~~i~~~~~~L~~L~l~~c  305 (482)
T KOG1947|consen  242 CRKLKSLDLSGCGLVTDIGLSALASRCPNLETLSLSNCSNLTDEGLVSIAERCPSLRELDLSGC  305 (482)
T ss_pred             cCCcCccchhhhhccCchhHHHHHhhCCCcceEccCCCCccchhHHHHHHHhcCcccEEeeecC
Confidence            3445555554444 3333322222 24455555544443 3333333322 3444555555544

>KOG0531 consensus Protein phosphatase 1, regulatory subunit, and related proteins [Signal transduction mechanisms]

Probab=98.34  E-value=2.2e-08  Score=94.86  Aligned_cols=107  Identities=33%  Similarity=0.378  Sum_probs=47.4

Q ss_pred             ccCCCCCCEEEecccccChhhhhhccCCCCCCeeeccCCCCchhhHHhhhcCCCCcEEECCCCCCChhHHHHhhcCCCcc
Q 012186          176 LSGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACLDSLSALGSLFYLNLNRCQLSDDGCEKFSKIGSLK  255 (469)
Q Consensus       176 ~~~~~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~  255 (469)
                      +..+.+|+.+++.++.+..... .+..+++|++|++++|.++..  ..+..++.|+.|++.+|.+...  ..+..++.|+
T Consensus        91 l~~~~~l~~l~l~~n~i~~i~~-~l~~~~~L~~L~ls~N~I~~i--~~l~~l~~L~~L~l~~N~i~~~--~~~~~l~~L~  165 (414)
T KOG0531|consen   91 LSKLKSLEALDLYDNKIEKIEN-LLSSLVNLQVLDLSFNKITKL--EGLSTLTLLKELNLSGNLISDI--SGLESLKSLK  165 (414)
T ss_pred             cccccceeeeeccccchhhccc-chhhhhcchheeccccccccc--cchhhccchhhheeccCcchhc--cCCccchhhh
Confidence            4445555555555555543211 144455555555555555442  2334444455555555544321  2223344455


Q ss_pred             EEEccCCCCchHHHHHhhCCCCCCEEecCCCC
Q 012186          256 VLNLGFNEITDECLVHLKGLTNLESLNLDSCG  287 (469)
Q Consensus       256 ~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~  287 (469)
                      .+++++|.+..........+.+++.+.+.++.
T Consensus       166 ~l~l~~n~i~~ie~~~~~~~~~l~~l~l~~n~  197 (414)
T KOG0531|consen  166 LLDLSYNRIVDIENDELSELISLEELDLGGNS  197 (414)
T ss_pred             cccCCcchhhhhhhhhhhhccchHHHhccCCc
Confidence            55555544443221002334444444444443

>KOG0531 consensus Protein phosphatase 1, regulatory subunit, and related proteins [Signal transduction mechanisms]

Probab=98.33  E-value=2.6e-08  Score=94.32  Aligned_cols=244  Identities=31%  Similarity=0.327  Sum_probs=143.8

Q ss_pred             CCCCCCeeeccCCCCchhhHHhhhcCCCCcEEECCCCCCChhHHHHhhcCCCccEEEccCCCCchHHHHHhhCCCCCCEE
Q 012186          202 GLQKLTLLNLEGCPVTAACLDSLSALGSLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESL  281 (469)
Q Consensus       202 ~l~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L  281 (469)
                      .+..++.+.+..+.+... ...+..+.+++.+++.+|.+..... .+..+++|+.|++++|.++..  ..+..++.|+.|
T Consensus        70 ~l~~l~~l~l~~n~i~~~-~~~l~~~~~l~~l~l~~n~i~~i~~-~l~~~~~L~~L~ls~N~I~~i--~~l~~l~~L~~L  145 (414)
T KOG0531|consen   70 SLTSLKELNLRQNLIAKI-LNHLSKLKSLEALDLYDNKIEKIEN-LLSSLVNLQVLDLSFNKITKL--EGLSTLTLLKEL  145 (414)
T ss_pred             HhHhHHhhccchhhhhhh-hcccccccceeeeeccccchhhccc-chhhhhcchheeccccccccc--cchhhccchhhh
Confidence            445555666666655441 2335667888888888887765321 156678888888888877653  335556668888


Q ss_pred             ecCCCCCChHHHHHhhCCCCCCEEeccCCCCChhhH-HHhhCCCCCcEEecccCCCCchHHHhhhCCCCCcEEEccCCCC
Q 012186          282 NLDSCGIGDEGLVNLTGLCNLKCLELSDTQVGSSGL-RHLSGLTNLESINLSFTGISDGSLRKLAGLSSLKSLNLDARQI  360 (469)
Q Consensus       282 ~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~-~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~  360 (469)
                      ++.+|.+...  ..+..++.|+.+++.+|.+..... . ...+.+++.+.+.++.+....  .+..+..+..+.+..+.+
T Consensus       146 ~l~~N~i~~~--~~~~~l~~L~~l~l~~n~i~~ie~~~-~~~~~~l~~l~l~~n~i~~i~--~~~~~~~l~~~~l~~n~i  220 (414)
T KOG0531|consen  146 NLSGNLISDI--SGLESLKSLKLLDLSYNRIVDIENDE-LSELISLEELDLGGNSIREIE--GLDLLKKLVLLSLLDNKI  220 (414)
T ss_pred             eeccCcchhc--cCCccchhhhcccCCcchhhhhhhhh-hhhccchHHHhccCCchhccc--chHHHHHHHHhhcccccc
Confidence            8888876542  344456777888888777665443 2 456777777777777654432  122223333445555555


Q ss_pred             CHHHHHHHhcCC--CCCEeecCCCCCChhHHHHhHcCCCCCeeeeCCCCCCHHHHHHHhcCCCCCeeeccCCCCCChh-H
Q 012186          361 TDTGLAALTSLT--GLTHLDLFGARITDSGAAYLRNFKNLRSLEICGGGLTDAGVKHIKDLSSLTLLNLSQNCNLTDK-T  437 (469)
Q Consensus       361 ~~~~~~~l~~~~--~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~l~~~-~  437 (469)
                      +..  ..+..+.  +|+.+++.+|.+.... ..+..+..+..+++.++.+....  .+...+.+..+....+...... .
T Consensus       221 ~~~--~~l~~~~~~~L~~l~l~~n~i~~~~-~~~~~~~~l~~l~~~~n~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~  295 (414)
T KOG0531|consen  221 SKL--EGLNELVMLHLRELYLSGNRISRSP-EGLENLKNLPVLDLSSNRISNLE--GLERLPKLSELWLNDNKLALSEAI  295 (414)
T ss_pred             eec--cCcccchhHHHHHHhcccCcccccc-ccccccccccccchhhccccccc--cccccchHHHhccCcchhcchhhh
Confidence            542  1122222  3778888888777532 44556777888888887765532  2334455666666666322111 1


Q ss_pred             HHH--HHhCcccccccccCCCCCH
Q 012186          438 LEL--ISGLTGLVSLNVSNSRITS  459 (469)
Q Consensus       438 ~~~--l~~l~~L~~L~l~~~~~~~  459 (469)
                      .+.  ....+.++.+.+..++...
T Consensus       296 ~~~~~~~~~~~~~~~~~~~~~~~~  319 (414)
T KOG0531|consen  296 SQEYITSAAPTLVTLTLELNPIRK  319 (414)
T ss_pred             hccccccccccccccccccCcccc
Confidence            111  3455677777777776544

>KOG0532 consensus Leucine-rich repeat (LRR) protein, contains calponin homology domain [Cytoskeleton]

Probab=98.31  E-value=2.3e-08  Score=92.19  Aligned_cols=172  Identities=19%  Similarity=0.110  Sum_probs=124.1

Q ss_pred             ccEEEecCCCCChHhhHhhhcCCCCCEEecCCCcccChhHhHhhhCCCCCCEEeCCCCCcCcHHHHHHHhCCCCCCEEec
Q 012186           59 LLSVDLSGSDVTDSGLIHLKDCSNLQSLDFNFCIQISDGGLEHLRGLSNLTSLSFRRNNAITAQGMKAFAGLINLVKLDL  138 (469)
Q Consensus        59 l~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~l  138 (469)
                      -...|++.|.+. ++|..+..|..|..+.+..+ . ....+..+.++..|.+++++.|..  ...|..+..++ |+.|.+
T Consensus        77 t~~aDlsrNR~~-elp~~~~~f~~Le~liLy~n-~-~r~ip~~i~~L~~lt~l~ls~Nql--S~lp~~lC~lp-Lkvli~  150 (722)
T KOG0532|consen   77 TVFADLSRNRFS-ELPEEACAFVSLESLILYHN-C-IRTIPEAICNLEALTFLDLSSNQL--SHLPDGLCDLP-LKVLIV  150 (722)
T ss_pred             hhhhhccccccc-cCchHHHHHHHHHHHHHHhc-c-ceecchhhhhhhHHHHhhhccchh--hcCChhhhcCc-ceeEEE
Confidence            344566776665 56777777777888877652 2 234577788888888889888875  55566666554 888888


Q ss_pred             ccccccccccccccCCCCccEEEccCCCCCChhhhhcccCCCCCCEEEecccccChhhhhhccCCCCCCeeeccCCCCch
Q 012186          139 ERCTRIHGGLVNLKGLMKLESLNIKWCNCITDSDMKPLSGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTA  218 (469)
Q Consensus       139 ~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~  218 (469)
                      ++| .+...+..++..+.|..|+.+.|+..+  .+..++++.+|+.|.+..|.+...+ ..+..++ |.+|+++.|++..
T Consensus       151 sNN-kl~~lp~~ig~~~tl~~ld~s~nei~s--lpsql~~l~slr~l~vrRn~l~~lp-~El~~Lp-Li~lDfScNkis~  225 (722)
T KOG0532|consen  151 SNN-KLTSLPEEIGLLPTLAHLDVSKNEIQS--LPSQLGYLTSLRDLNVRRNHLEDLP-EELCSLP-LIRLDFSCNKISY  225 (722)
T ss_pred             ecC-ccccCCcccccchhHHHhhhhhhhhhh--chHHhhhHHHHHHHHHhhhhhhhCC-HHHhCCc-eeeeecccCceee
Confidence            875 566777777888888888888765444  5677778888888888887776443 3344444 7788888888776


Q ss_pred             hhHHhhhcCCCCcEEECCCCCCCh
Q 012186          219 ACLDSLSALGSLFYLNLNRCQLSD  242 (469)
Q Consensus       219 ~~~~~~~~~~~L~~L~l~~~~~~~  242 (469)
                      + |..|.++..|++|.+.+|.+..
T Consensus       226 i-Pv~fr~m~~Lq~l~LenNPLqS  248 (722)
T KOG0532|consen  226 L-PVDFRKMRHLQVLQLENNPLQS  248 (722)
T ss_pred             c-chhhhhhhhheeeeeccCCCCC
Confidence            5 6678888888888888888765

>KOG1859 consensus Leucine-rich repeat proteins [General function prediction only]

Probab=98.20  E-value=4.2e-08  Score=93.10  Aligned_cols=125  Identities=23%  Similarity=0.256  Sum_probs=55.6

Q ss_pred             CCEEecCCCCCChHHHHHhhCCCCCCEEeccCCCCChhhHHHhhCCCCCcEEecccCCCCchHHHhhhCCCCCcEEEccC
Q 012186          278 LESLNLDSCGIGDEGLVNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISDGSLRKLAGLSSLKSLNLDA  357 (469)
Q Consensus       278 L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~  357 (469)
                      |...+.+.|.+.. ...++.-++.++.|+++.|.+.+..  .+..+++|+.|+|++|.+....--....|. |..|.+++
T Consensus       166 L~~a~fsyN~L~~-mD~SLqll~ale~LnLshNk~~~v~--~Lr~l~~LkhLDlsyN~L~~vp~l~~~gc~-L~~L~lrn  241 (1096)
T KOG1859|consen  166 LATASFSYNRLVL-MDESLQLLPALESLNLSHNKFTKVD--NLRRLPKLKHLDLSYNCLRHVPQLSMVGCK-LQLLNLRN  241 (1096)
T ss_pred             HhhhhcchhhHHh-HHHHHHHHHHhhhhccchhhhhhhH--HHHhcccccccccccchhccccccchhhhh-heeeeecc
Confidence            3344444443321 2233444455555566555554422  455555555555555544332211111222 55555555


Q ss_pred             CCCCHHHHHHHhcCCCCCEeecCCCCCChhH-HHHhHcCCCCCeeeeCCCCC
Q 012186          358 RQITDTGLAALTSLTGLTHLDLFGARITDSG-AAYLRNFKNLRSLEICGGGL  408 (469)
Q Consensus       358 ~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~-~~~~~~~~~L~~L~l~~~~~  408 (469)
                      |.++.  ...+.++.+|+.||++.|-+.+.- ...+..+..|.+|++.+|.+
T Consensus       242 N~l~t--L~gie~LksL~~LDlsyNll~~hseL~pLwsLs~L~~L~LeGNPl  291 (1096)
T KOG1859|consen  242 NALTT--LRGIENLKSLYGLDLSYNLLSEHSELEPLWSLSSLIVLWLEGNPL  291 (1096)
T ss_pred             cHHHh--hhhHHhhhhhhccchhHhhhhcchhhhHHHHHHHHHHHhhcCCcc
Confidence            55544  233445555555555555433211 11122344455555555443

>KOG1947 consensus Leucine rich repeat proteins, some proteins contain F-box [General function prediction only]

Probab=97.99  E-value=1.8e-05  Score=77.34  Aligned_cols=187  Identities=30%  Similarity=0.290  Sum_probs=97.2

Q ss_pred             cCCCccEEEccCCC-CchH-HHHHhhCCCCCCEEecCCC-C-CChH---HHHHhhCCCCCCEEeccCCC-CChhhHHHhh
Q 012186          250 KIGSLKVLNLGFNE-ITDE-CLVHLKGLTNLESLNLDSC-G-IGDE---GLVNLTGLCNLKCLELSDTQ-VGSSGLRHLS  321 (469)
Q Consensus       250 ~~~~L~~L~l~~~~-~~~~-~~~~~~~l~~L~~L~l~~~-~-~~~~---~~~~~~~~~~L~~L~l~~~~-~~~~~~~~~~  321 (469)
                      ..+.|+.+.+.++. +... .......++.|+.|+++++ . ....   .......+++|+.+++..+. +++.....+.
T Consensus       186 ~~~~L~~l~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~L~~l~l~~~~~isd~~l~~l~  265 (482)
T KOG1947|consen  186 SCPLLKRLSLSGCSKITDDSLDALALKCPNLEELDLSGCCLLITLSPLLLLLLLSICRKLKSLDLSGCGLVTDIGLSALA  265 (482)
T ss_pred             hCchhhHhhhcccccCChhhHHHHHhhCchhheecccCcccccccchhHhhhhhhhcCCcCccchhhhhccCchhHHHHH
Confidence            45677777766553 2221 2334456677777777652 1 1111   11122345666777776665 5555554444


Q ss_pred             -CCCCCcEEecccCC-CCchHHHhhh-CCCCCcEEEccCCCCC-HHH-HHHHhcCCCCCEeecCCCCCChhHHHHhHcCC
Q 012186          322 -GLTNLESINLSFTG-ISDGSLRKLA-GLSSLKSLNLDARQIT-DTG-LAALTSLTGLTHLDLFGARITDSGAAYLRNFK  396 (469)
Q Consensus       322 -~~~~L~~L~l~~~~-~~~~~~~~~~-~~~~L~~L~l~~~~~~-~~~-~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~  396 (469)
                       .+++|+.|.+.+|. +++.....+. .+++|++|+++++... ... .....++++++.+.+....-          ++
T Consensus       266 ~~c~~L~~L~l~~c~~lt~~gl~~i~~~~~~L~~L~l~~c~~~~d~~l~~~~~~c~~l~~l~~~~~~~----------c~  335 (482)
T KOG1947|consen  266 SRCPNLETLSLSNCSNLTDEGLVSIAERCPSLRELDLSGCHGLTDSGLEALLKNCPNLRELKLLSLNG----------CP  335 (482)
T ss_pred             hhCCCcceEccCCCCccchhHHHHHHHhcCcccEEeeecCccchHHHHHHHHHhCcchhhhhhhhcCC----------Cc
Confidence             36677777766664 4555544443 4666777777665432 221 12233466666555443321          33


Q ss_pred             CCCeeeeCCCCC---CHHHHHHHhcCCCCCeeeccCCCCCChhH-HHHHHhCccc
Q 012186          397 NLRSLEICGGGL---TDAGVKHIKDLSSLTLLNLSQNCNLTDKT-LELISGLTGL  447 (469)
Q Consensus       397 ~L~~L~l~~~~~---~~~~~~~l~~~~~L~~L~l~~~~~l~~~~-~~~l~~l~~L  447 (469)
                      .++.+.+.++..   ..........++.++.+.+..+. ..... ...+.+++.|
T Consensus       336 ~l~~~~l~~~~~~~~d~~~~~~~~~~~~l~~~~l~~~~-~~~~~~~~~l~gc~~l  389 (482)
T KOG1947|consen  336 SLTDLSLSGLLTLTSDDLAELILRSCPKLTDLSLSYCG-ISDLGLELSLRGCPNL  389 (482)
T ss_pred             cHHHHHHHHhhccCchhHhHHHHhcCCCcchhhhhhhh-ccCcchHHHhcCCccc
Confidence            333344333222   12222344678888888888885 55544 3555667666

>KOG4579 consensus Leucine-rich repeat (LRR) protein associated with apoptosis in muscle tissue [General function prediction only]

Probab=97.95  E-value=4.7e-06  Score=62.53  Aligned_cols=109  Identities=20%  Similarity=0.195  Sum_probs=65.9

Q ss_pred             CCcEEecccCCCCc--hHHHhhhCCCCCcEEEccCCCCCHHHHHHHhcCCCCCEeecCCCCCChhHHHHhHcCCCCCeee
Q 012186          325 NLESINLSFTGISD--GSLRKLAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLFGARITDSGAAYLRNFKNLRSLE  402 (469)
Q Consensus       325 ~L~~L~l~~~~~~~--~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~  402 (469)
                      .+..++++.|++..  ..+..+.....|+..++++|.+...+...-..+|.++.+++.+|.+++. |+.+..++.|+.|+
T Consensus        28 E~h~ldLssc~lm~i~davy~l~~~~el~~i~ls~N~fk~fp~kft~kf~t~t~lNl~~neisdv-PeE~Aam~aLr~lN  106 (177)
T KOG4579|consen   28 ELHFLDLSSCQLMYIADAVYMLSKGYELTKISLSDNGFKKFPKKFTIKFPTATTLNLANNEISDV-PEELAAMPALRSLN  106 (177)
T ss_pred             HhhhcccccchhhHHHHHHHHHhCCceEEEEecccchhhhCCHHHhhccchhhhhhcchhhhhhc-hHHHhhhHHhhhcc
Confidence            34556666665432  1233444556666677777777665555445666677777777777664 44466777777777


Q ss_pred             eCCCCCCHHHHHHHhcCCCCCeeeccCCCCCChh
Q 012186          403 ICGGGLTDAGVKHIKDLSSLTLLNLSQNCNLTDK  436 (469)
Q Consensus       403 l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~l~~~  436 (469)
                      +++|.+... |+.+..+.+|-.|+..+| .+..+
T Consensus       107 l~~N~l~~~-p~vi~~L~~l~~Lds~~n-a~~ei  138 (177)
T KOG4579|consen  107 LRFNPLNAE-PRVIAPLIKLDMLDSPEN-ARAEI  138 (177)
T ss_pred             cccCccccc-hHHHHHHHhHHHhcCCCC-ccccC
Confidence            777766554 555555666666766666 44433

>KOG2123 consensus Uncharacterized conserved protein [Function unknown]

Probab=97.83  E-value=4.6e-06  Score=70.40  Aligned_cols=101  Identities=23%  Similarity=0.239  Sum_probs=64.6

Q ss_pred             CCCCcEEEccCCCCCHHHHHHHhcCCCCCEeecCCCCCChhHHHHhHcCCCCCeeeeCCCCCCHHH-HHHHhcCCCCCee
Q 012186          347 LSSLKSLNLDARQITDTGLAALTSLTGLTHLDLFGARITDSGAAYLRNFKNLRSLEICGGGLTDAG-VKHIKDLSSLTLL  425 (469)
Q Consensus       347 ~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~-~~~l~~~~~L~~L  425 (469)
                      +.+.++|++++|.+.++  .....||.|+.|.++-|+|+..  ..+..|.+|++|.+..|.|.... .+.+.++|+|+.|
T Consensus        18 l~~vkKLNcwg~~L~DI--sic~kMp~lEVLsLSvNkIssL--~pl~rCtrLkElYLRkN~I~sldEL~YLknlpsLr~L   93 (388)
T KOG2123|consen   18 LENVKKLNCWGCGLDDI--SICEKMPLLEVLSLSVNKISSL--APLQRCTRLKELYLRKNCIESLDELEYLKNLPSLRTL   93 (388)
T ss_pred             HHHhhhhcccCCCccHH--HHHHhcccceeEEeeccccccc--hhHHHHHHHHHHHHHhcccccHHHHHHHhcCchhhhH
Confidence            34566777777777764  3345777777777777777763  34556777777777777776542 2345677777777


Q ss_pred             eccCCCCCChhHHH----HHHhCccccccc
Q 012186          426 NLSQNCNLTDKTLE----LISGLTGLVSLN  451 (469)
Q Consensus       426 ~l~~~~~l~~~~~~----~l~~l~~L~~L~  451 (469)
                      .|..|+.....++.    .+.-+|+|+.||
T Consensus        94 WL~ENPCc~~ag~nYR~~VLR~LPnLkKLD  123 (388)
T KOG2123|consen   94 WLDENPCCGEAGQNYRRKVLRVLPNLKKLD  123 (388)
T ss_pred             hhccCCcccccchhHHHHHHHHcccchhcc
Confidence            77777655444432    345567776664

>KOG4579 consensus Leucine-rich repeat (LRR) protein associated with apoptosis in muscle tissue [General function prediction only]

Probab=97.79  E-value=7.8e-06  Score=61.41  Aligned_cols=112  Identities=21%  Similarity=0.212  Sum_probs=77.1

Q ss_pred             CCEEeccCCCCCh--hhHHHhhCCCCCcEEecccCCCCchHHHhhhCCCCCcEEEccCCCCCHHHHHHHhcCCCCCEeec
Q 012186          302 LKCLELSDTQVGS--SGLRHLSGLTNLESINLSFTGISDGSLRKLAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDL  379 (469)
Q Consensus       302 L~~L~l~~~~~~~--~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l  379 (469)
                      +-.++++.|++..  ..+..+.....|+..++++|.+.+..+.....+|..+.+++++|.+.+.+. .++.+|.|+.|++
T Consensus        29 ~h~ldLssc~lm~i~davy~l~~~~el~~i~ls~N~fk~fp~kft~kf~t~t~lNl~~neisdvPe-E~Aam~aLr~lNl  107 (177)
T KOG4579|consen   29 LHFLDLSSCQLMYIADAVYMLSKGYELTKISLSDNGFKKFPKKFTIKFPTATTLNLANNEISDVPE-ELAAMPALRSLNL  107 (177)
T ss_pred             hhhcccccchhhHHHHHHHHHhCCceEEEEecccchhhhCCHHHhhccchhhhhhcchhhhhhchH-HHhhhHHhhhccc
Confidence            3455666665442  223445566777888888887776665555667788888888888887744 4888888888888


Q ss_pred             CCCCCChhHHHHhHcCCCCCeeeeCCCCCCHHHHHH
Q 012186          380 FGARITDSGAAYLRNFKNLRSLEICGGGLTDAGVKH  415 (469)
Q Consensus       380 ~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~  415 (469)
                      ..|++... |..+..+.++-.|+..+|...++....
T Consensus       108 ~~N~l~~~-p~vi~~L~~l~~Lds~~na~~eid~dl  142 (177)
T KOG4579|consen  108 RFNPLNAE-PRVIAPLIKLDMLDSPENARAEIDVDL  142 (177)
T ss_pred             ccCccccc-hHHHHHHHhHHHhcCCCCccccCcHHH
Confidence            88887765 344444777778888887776664443

>PF12799 LRR_4: Leucine Rich repeats (2 copies); PDB: 2OMT_A 1XEU_A 2OMX_A 2OMU_A 2UZY_A 2WQU_D 1D0B_A 2WQW_A 1OTO_A 2WQV_B

Probab=97.57  E-value=6.6e-05  Score=45.25  Aligned_cols=33  Identities=36%  Similarity=0.557  Sum_probs=14.1

Q ss_pred             CCCeeeeCCCCCCHHHHHHHhcCCCCCeeeccCC
Q 012186          397 NLRSLEICGGGLTDAGVKHIKDLSSLTLLNLSQN  430 (469)
Q Consensus       397 ~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~  430 (469)
                      +|++|++++|++++..+ .++++++|+.|++++|
T Consensus         2 ~L~~L~l~~N~i~~l~~-~l~~l~~L~~L~l~~N   34 (44)
T PF12799_consen    2 NLEELDLSNNQITDLPP-ELSNLPNLETLNLSNN   34 (44)
T ss_dssp             T-SEEEETSSS-SSHGG-HGTTCTTSSEEEETSS
T ss_pred             cceEEEccCCCCcccCc-hHhCCCCCCEEEecCC
Confidence            34444444444444322 3444445555555544

...

>KOG3864 consensus Uncharacterized conserved protein [Function unknown]

Probab=97.55  E-value=8.4e-05  Score=60.01  Aligned_cols=84  Identities=23%  Similarity=0.318  Sum_probs=51.9

Q ss_pred             CCcEEEccCCCCCHHHHHHHhcCCCCCEeecCCCCCChh-HHHHhH-cCCCCCeeeeCCC-CCCHHHHHHHhcCCCCCee
Q 012186          349 SLKSLNLDARQITDTGLAALTSLTGLTHLDLFGARITDS-GAAYLR-NFKNLRSLEICGG-GLTDAGVKHIKDLSSLTLL  425 (469)
Q Consensus       349 ~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~-~~~~~~-~~~~L~~L~l~~~-~~~~~~~~~l~~~~~L~~L  425 (469)
                      .++.++-+++.+...+...+.+++.++.|.+.+|+..+. ..+.+. -.++|+.|++++| +||+.+..++..+++|+.|
T Consensus       102 ~IeaVDAsds~I~~eGle~L~~l~~i~~l~l~~ck~~dD~~L~~l~~~~~~L~~L~lsgC~rIT~~GL~~L~~lknLr~L  181 (221)
T KOG3864|consen  102 KIEAVDASDSSIMYEGLEHLRDLRSIKSLSLANCKYFDDWCLERLGGLAPSLQDLDLSGCPRITDGGLACLLKLKNLRRL  181 (221)
T ss_pred             eEEEEecCCchHHHHHHHHHhccchhhhheeccccchhhHHHHHhcccccchheeeccCCCeechhHHHHHHHhhhhHHH
Confidence            356677777777777777777777777777777754332 222222 2356666666654 4666666666666666666


Q ss_pred             eccCCCC
Q 012186          426 NLSQNCN  432 (469)
Q Consensus       426 ~l~~~~~  432 (469)
                      .+.+=+.
T Consensus       182 ~l~~l~~  188 (221)
T KOG3864|consen  182 HLYDLPY  188 (221)
T ss_pred             HhcCchh
Confidence            6665543

>KOG1644 consensus U2-associated snRNP A' protein [RNA processing and modification]

Probab=97.52  E-value=4.5e-05  Score=61.47  Aligned_cols=79  Identities=23%  Similarity=0.313  Sum_probs=36.7

Q ss_pred             CcEEEccCCCCCHHHHHHHhcCCCCCEeecCCCCCChhHHHHhHcCCCCCeeeeCCCCCCHHHH-HHHhcCCCCCeeecc
Q 012186          350 LKSLNLDARQITDTGLAALTSLTGLTHLDLFGARITDSGAAYLRNFKNLRSLEICGGGLTDAGV-KHIKDLSSLTLLNLS  428 (469)
Q Consensus       350 L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~-~~l~~~~~L~~L~l~  428 (469)
                      ...+++++|++..  ...+..++.|.+|.+.+|.++.+.|..-.-++.|+.|.+.+|.+.+... .-+..||+|++|.+-
T Consensus        44 ~d~iDLtdNdl~~--l~~lp~l~rL~tLll~nNrIt~I~p~L~~~~p~l~~L~LtnNsi~~l~dl~pLa~~p~L~~Ltll  121 (233)
T KOG1644|consen   44 FDAIDLTDNDLRK--LDNLPHLPRLHTLLLNNNRITRIDPDLDTFLPNLKTLILTNNSIQELGDLDPLASCPKLEYLTLL  121 (233)
T ss_pred             cceecccccchhh--cccCCCccccceEEecCCcceeeccchhhhccccceEEecCcchhhhhhcchhccCCccceeeec
Confidence            3344444444443  2334444555555555555554443333334555555555555444321 123445555555555


Q ss_pred             CC
Q 012186          429 QN  430 (469)
Q Consensus       429 ~~  430 (469)
                      +|
T Consensus       122 ~N  123 (233)
T KOG1644|consen  122 GN  123 (233)
T ss_pred             CC
Confidence            55

>PF12799 LRR_4: Leucine Rich repeats (2 copies); PDB: 2OMT_A 1XEU_A 2OMX_A 2OMU_A 2UZY_A 2WQU_D 1D0B_A 2WQW_A 1OTO_A 2WQV_B

Probab=97.51  E-value=9.8e-05  Score=44.48  Aligned_cols=35  Identities=34%  Similarity=0.504  Sum_probs=12.8

Q ss_pred             CCEeecCCCCCChhHHHHhHcCCCCCeeeeCCCCCC
Q 012186          374 LTHLDLFGARITDSGAAYLRNFKNLRSLEICGGGLT  409 (469)
Q Consensus       374 L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~  409 (469)
                      |++|++++|++++. +..+.++++|+.|++++|+++
T Consensus         3 L~~L~l~~N~i~~l-~~~l~~l~~L~~L~l~~N~i~   37 (44)
T PF12799_consen    3 LEELDLSNNQITDL-PPELSNLPNLETLNLSNNPIS   37 (44)
T ss_dssp             -SEEEETSSS-SSH-GGHGTTCTTSSEEEETSSCCS
T ss_pred             ceEEEccCCCCccc-CchHhCCCCCCEEEecCCCCC
Confidence            34444444444432 122334444444444444433

...

>PRK15386 type III secretion protein GogB; Provisional

Probab=97.44  E-value=0.00015  Score=66.54  Aligned_cols=137  Identities=12%  Similarity=0.107  Sum_probs=64.3

Q ss_pred             hhcCCCccEEEccCCCCchHHHHHhhCCCCCCEEecCCCCCChHHHHHhhCCCCCCEEeccCC-CCChhhHHHhhCCCCC
Q 012186          248 FSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNLDSCGIGDEGLVNLTGLCNLKCLELSDT-QVGSSGLRHLSGLTNL  326 (469)
Q Consensus       248 ~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~-~~~~~~~~~~~~~~~L  326 (469)
                      +..+.+++.|++++|.+... |   .-.++|+.|.+++|.--...+..+  .++|+.|.+.+| .+..       -.+.|
T Consensus        48 ~~~~~~l~~L~Is~c~L~sL-P---~LP~sLtsL~Lsnc~nLtsLP~~L--P~nLe~L~Ls~Cs~L~s-------LP~sL  114 (426)
T PRK15386         48 IEEARASGRLYIKDCDIESL-P---VLPNELTEITIENCNNLTTLPGSI--PEGLEKLTVCHCPEISG-------LPESV  114 (426)
T ss_pred             HHHhcCCCEEEeCCCCCccc-C---CCCCCCcEEEccCCCCcccCCchh--hhhhhheEccCcccccc-------ccccc
Confidence            34467777777777765532 2   122357777777653211222222  246777777766 2221       12456


Q ss_pred             cEEecccCCCCchHHHhhhCC-CCCcEEEccCCC-CCHHHHHHHhcCCCCCEeecCCCCCChhHHHHhHcCCCCCeeeeC
Q 012186          327 ESINLSFTGISDGSLRKLAGL-SSLKSLNLDARQ-ITDTGLAALTSLTGLTHLDLFGARITDSGAAYLRNFKNLRSLEIC  404 (469)
Q Consensus       327 ~~L~l~~~~~~~~~~~~~~~~-~~L~~L~l~~~~-~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~  404 (469)
                      +.|.+.++....     +..+ ++|+.|.+.+++ ........ .-.++|++|++++|.... .|..+  ..+|+.|.++
T Consensus       115 e~L~L~~n~~~~-----L~~LPssLk~L~I~~~n~~~~~~lp~-~LPsSLk~L~Is~c~~i~-LP~~L--P~SLk~L~ls  185 (426)
T PRK15386        115 RSLEIKGSATDS-----IKNVPNGLTSLSINSYNPENQARIDN-LISPSLKTLSLTGCSNII-LPEKL--PESLQSITLH  185 (426)
T ss_pred             ceEEeCCCCCcc-----cccCcchHhheecccccccccccccc-ccCCcccEEEecCCCccc-Ccccc--cccCcEEEec
Confidence            666665443321     1122 356666654322 10000000 011466777776665432 12222  2466666666


Q ss_pred             CC
Q 012186          405 GG  406 (469)
Q Consensus       405 ~~  406 (469)
                      .+
T Consensus       186 ~n  187 (426)
T PRK15386        186 IE  187 (426)
T ss_pred             cc
Confidence            54

>PF13306 LRR_5: Leucine rich repeats (6 copies); PDB: 3ZYJ_A 3V47_B 3V44_A 3ZYN_A 3ZYO_A 3SB4_A

Probab=97.40  E-value=7e-05  Score=58.36  Aligned_cols=9  Identities=33%  Similarity=0.630  Sum_probs=3.2

Q ss_pred             CCCCCEeec
Q 012186          371 LTGLTHLDL  379 (469)
Q Consensus       371 ~~~L~~L~l  379 (469)
                      +++|+.+.+
T Consensus        80 ~~~l~~i~~   88 (129)
T PF13306_consen   80 CTNLKNIDI   88 (129)
T ss_dssp             -TTECEEEE
T ss_pred             ccccccccc
Confidence            334444443

>KOG1644 consensus U2-associated snRNP A' protein [RNA processing and modification]

Probab=97.35  E-value=0.00028  Score=57.04  Aligned_cols=105  Identities=22%  Similarity=0.177  Sum_probs=65.7

Q ss_pred             CCccEEEecCCCCChHhhHhhhcCCCCCEEecCCCcccChhHhHhhhCCCCCCEEeCCCCCcCcHHHHHHHhCCCCCCEE
Q 012186           57 SSLLSVDLSGSDVTDSGLIHLKDCSNLQSLDFNFCIQISDGGLEHLRGLSNLTSLSFRRNNAITAQGMKAFAGLINLVKL  136 (469)
Q Consensus        57 ~~l~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L  136 (469)
                      .+...+||++|++..  ..-|.++++|..|.+++ +.|+...+.--.-+++|..|.+.+|.+..-....-+..|++|++|
T Consensus        42 d~~d~iDLtdNdl~~--l~~lp~l~rL~tLll~n-NrIt~I~p~L~~~~p~l~~L~LtnNsi~~l~dl~pLa~~p~L~~L  118 (233)
T KOG1644|consen   42 DQFDAIDLTDNDLRK--LDNLPHLPRLHTLLLNN-NRITRIDPDLDTFLPNLKTLILTNNSIQELGDLDPLASCPKLEYL  118 (233)
T ss_pred             cccceecccccchhh--cccCCCccccceEEecC-CcceeeccchhhhccccceEEecCcchhhhhhcchhccCCcccee
Confidence            466778888877643  24467778888888877 467766555555567788888887765333333445667777777


Q ss_pred             eccccccccccc---ccccCCCCccEEEccC
Q 012186          137 DLERCTRIHGGL---VNLKGLMKLESLNIKW  164 (469)
Q Consensus       137 ~l~~~~~~~~~~---~~l~~l~~L~~L~l~~  164 (469)
                      .+-+|+.-...-   -.+.++|+|++|+..+
T Consensus       119 tll~Npv~~k~~YR~yvl~klp~l~~LDF~k  149 (233)
T KOG1644|consen  119 TLLGNPVEHKKNYRLYVLYKLPSLRTLDFQK  149 (233)
T ss_pred             eecCCchhcccCceeEEEEecCcceEeehhh
Confidence            776654322211   2345666666666654

>KOG2739 consensus Leucine-rich acidic nuclear protein [Cell cycle control, cell division, chromosome partitioning; General function prediction only]

Probab=97.23  E-value=0.00014  Score=61.33  Aligned_cols=105  Identities=25%  Similarity=0.340  Sum_probs=51.2

Q ss_pred             CCCCcEEecccCCCCchHHHhhhCCCCCcEEEccCC--CCCHHHHHHHhcCCCCCEeecCCCCCChhH-HHHhHcCCCCC
Q 012186          323 LTNLESINLSFTGISDGSLRKLAGLSSLKSLNLDAR--QITDTGLAALTSLTGLTHLDLFGARITDSG-AAYLRNFKNLR  399 (469)
Q Consensus       323 ~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~--~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~-~~~~~~~~~L~  399 (469)
                      +..|+.+++.++.++.  ...++.+|+|+.|.++.|  .+..........+|+|+++++++|++.... ...+..+++|.
T Consensus        42 ~~~le~ls~~n~gltt--~~~~P~Lp~LkkL~lsdn~~~~~~~l~vl~e~~P~l~~l~ls~Nki~~lstl~pl~~l~nL~  119 (260)
T KOG2739|consen   42 FVELELLSVINVGLTT--LTNFPKLPKLKKLELSDNYRRVSGGLEVLAEKAPNLKVLNLSGNKIKDLSTLRPLKELENLK  119 (260)
T ss_pred             ccchhhhhhhccceee--cccCCCcchhhhhcccCCcccccccceehhhhCCceeEEeecCCccccccccchhhhhcchh
Confidence            3445555555544432  234455667777777766  333222222234577777777777665311 12234455566


Q ss_pred             eeeeCCCCCCHHH---HHHHhcCCCCCeeeccC
Q 012186          400 SLEICGGGLTDAG---VKHIKDLSSLTLLNLSQ  429 (469)
Q Consensus       400 ~L~l~~~~~~~~~---~~~l~~~~~L~~L~l~~  429 (469)
                      .|++.+|..+...   -..|.-+++|++|+-.+
T Consensus       120 ~Ldl~n~~~~~l~dyre~vf~ll~~L~~LD~~d  152 (260)
T KOG2739|consen  120 SLDLFNCSVTNLDDYREKVFLLLPSLKYLDGCD  152 (260)
T ss_pred             hhhcccCCccccccHHHHHHHHhhhhccccccc
Confidence            6666665544311   11223345555554433

>KOG3864 consensus Uncharacterized conserved protein [Function unknown]

Probab=97.22  E-value=0.00024  Score=57.51  Aligned_cols=84  Identities=32%  Similarity=0.430  Sum_probs=65.0

Q ss_pred             CccEEEecCCCCChHhhHhhhcCCCCCEEecCCCcccChhHhHhhhC-CCCCCEEeCCCCCcCcHHHHHHHhCCCCCCEE
Q 012186           58 SLLSVDLSGSDVTDSGLIHLKDCSNLQSLDFNFCIQISDGGLEHLRG-LSNLTSLSFRRNNAITAQGMKAFAGLINLVKL  136 (469)
Q Consensus        58 ~l~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~l~~-~~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L  136 (469)
                      .++.++-+++.|..+....+..++.++.|.+.+|..+.+...+.+++ .++|+.|++++|..+++.....+.++++|+.|
T Consensus       102 ~IeaVDAsds~I~~eGle~L~~l~~i~~l~l~~ck~~dD~~L~~l~~~~~~L~~L~lsgC~rIT~~GL~~L~~lknLr~L  181 (221)
T KOG3864|consen  102 KIEAVDASDSSIMYEGLEHLRDLRSIKSLSLANCKYFDDWCLERLGGLAPSLQDLDLSGCPRITDGGLACLLKLKNLRRL  181 (221)
T ss_pred             eEEEEecCCchHHHHHHHHHhccchhhhheeccccchhhHHHHHhcccccchheeeccCCCeechhHHHHHHHhhhhHHH
Confidence            46777777888877777888888888888888887777777777654 45888888888887777777778888888888


Q ss_pred             ecccc
Q 012186          137 DLERC  141 (469)
Q Consensus       137 ~l~~~  141 (469)
                      .+.+-
T Consensus       182 ~l~~l  186 (221)
T KOG3864|consen  182 HLYDL  186 (221)
T ss_pred             HhcCc
Confidence            77663

>PF13306 LRR_5: Leucine rich repeats (6 copies); PDB: 3ZYJ_A 3V47_B 3V44_A 3ZYN_A 3ZYO_A 3SB4_A

Probab=97.18  E-value=0.00046  Score=53.66  Aligned_cols=36  Identities=25%  Similarity=0.283  Sum_probs=11.1

Q ss_pred             ccCCCCccEEEccCCCCCChhhhhcccCCCCCCEEEec
Q 012186          151 LKGLMKLESLNIKWCNCITDSDMKPLSGLTNLKSLQIS  188 (469)
Q Consensus       151 l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~  188 (469)
                      +..+.+|+.+.+..  .+.......+.++++|+.+.+.
T Consensus         8 F~~~~~l~~i~~~~--~~~~I~~~~F~~~~~l~~i~~~   43 (129)
T PF13306_consen    8 FYNCSNLESITFPN--TIKKIGENAFSNCTSLKSINFP   43 (129)
T ss_dssp             TTT-TT--EEEETS--T--EE-TTTTTT-TT-SEEEES
T ss_pred             HhCCCCCCEEEECC--CeeEeChhhccccccccccccc
Confidence            33444444444432  1222233334444444444443

>KOG2123 consensus Uncharacterized conserved protein [Function unknown]

Probab=97.15  E-value=4.8e-05  Score=64.45  Aligned_cols=101  Identities=20%  Similarity=0.188  Sum_probs=70.1

Q ss_pred             CCCccEEEecCCCCChHhhHhhhcCCCCCEEecCCCcccChhHhHhhhCCCCCCEEeCCCCCcCcHHHHHHHhCCCCCCE
Q 012186           56 GSSLLSVDLSGSDVTDSGLIHLKDCSNLQSLDFNFCIQISDGGLEHLRGLSNLTSLSFRRNNAITAQGMKAFAGLINLVK  135 (469)
Q Consensus        56 ~~~l~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~  135 (469)
                      ..+++.|++-++.+++.  ....+++.|++|.|+- ++|+.  ...+..|++|++|+|..|.+........+.++++|++
T Consensus        18 l~~vkKLNcwg~~L~DI--sic~kMp~lEVLsLSv-NkIss--L~pl~rCtrLkElYLRkN~I~sldEL~YLknlpsLr~   92 (388)
T KOG2123|consen   18 LENVKKLNCWGCGLDDI--SICEKMPLLEVLSLSV-NKISS--LAPLQRCTRLKELYLRKNCIESLDELEYLKNLPSLRT   92 (388)
T ss_pred             HHHhhhhcccCCCccHH--HHHHhcccceeEEeec-ccccc--chhHHHHHHHHHHHHHhcccccHHHHHHHhcCchhhh
Confidence            45778888888888764  3346888888888887 35544  5567788888888888887655555677788888888


Q ss_pred             Eeccccccccccc-----ccccCCCCccEEE
Q 012186          136 LDLERCTRIHGGL-----VNLKGLMKLESLN  161 (469)
Q Consensus       136 L~l~~~~~~~~~~-----~~l~~l~~L~~L~  161 (469)
                      |-+..|+......     ..+..+|+|+.|+
T Consensus        93 LWL~ENPCc~~ag~nYR~~VLR~LPnLkKLD  123 (388)
T KOG2123|consen   93 LWLDENPCCGEAGQNYRRKVLRVLPNLKKLD  123 (388)
T ss_pred             HhhccCCcccccchhHHHHHHHHcccchhcc
Confidence            8887776544333     2244566666665

>PRK15386 type III secretion protein GogB; Provisional

Probab=97.05  E-value=0.001  Score=61.14  Aligned_cols=137  Identities=15%  Similarity=0.166  Sum_probs=86.2

Q ss_pred             HhhCCCCCCEEecCCCCCChHHHHHhhCCCCCCEEeccCCCCChhhHHHhhCCCCCcEEecccC-CCCchHHHhhhCCCC
Q 012186          271 HLKGLTNLESLNLDSCGIGDEGLVNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSFT-GISDGSLRKLAGLSS  349 (469)
Q Consensus       271 ~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~-~~~~~~~~~~~~~~~  349 (469)
                      .+..+.+++.|++++|.+...+  .  -.++|+.|.+.+|..-...+..+  .++|+.|.+++| .+.. .|      ++
T Consensus        47 r~~~~~~l~~L~Is~c~L~sLP--~--LP~sLtsL~Lsnc~nLtsLP~~L--P~nLe~L~Ls~Cs~L~s-LP------~s  113 (426)
T PRK15386         47 QIEEARASGRLYIKDCDIESLP--V--LPNELTEITIENCNNLTTLPGSI--PEGLEKLTVCHCPEISG-LP------ES  113 (426)
T ss_pred             HHHHhcCCCEEEeCCCCCcccC--C--CCCCCcEEEccCCCCcccCCchh--hhhhhheEccCcccccc-cc------cc
Confidence            3556789999999999776442  1  23479999998874433333322  368999999988 4432 22      56


Q ss_pred             CcEEEccCCCCCHHHHHHHhcC-CCCCEeecCCCCCC-h-hHHHHhHcCCCCCeeeeCCCCCCHHHHHHHhcCCCCCeee
Q 012186          350 LKSLNLDARQITDTGLAALTSL-TGLTHLDLFGARIT-D-SGAAYLRNFKNLRSLEICGGGLTDAGVKHIKDLSSLTLLN  426 (469)
Q Consensus       350 L~~L~l~~~~~~~~~~~~l~~~-~~L~~L~l~~~~~~-~-~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~  426 (469)
                      |+.|.+..+....     +..+ ++|+.|.+.++... . ..+..  -.++|+.|++++|..... |..+  ..+|+.|+
T Consensus       114 Le~L~L~~n~~~~-----L~~LPssLk~L~I~~~n~~~~~~lp~~--LPsSLk~L~Is~c~~i~L-P~~L--P~SLk~L~  183 (426)
T PRK15386        114 VRSLEIKGSATDS-----IKNVPNGLTSLSINSYNPENQARIDNL--ISPSLKTLSLTGCSNIIL-PEKL--PESLQSIT  183 (426)
T ss_pred             cceEEeCCCCCcc-----cccCcchHhheeccccccccccccccc--cCCcccEEEecCCCcccC-cccc--cccCcEEE
Confidence            8888887655443     2223 36788887543211 1 01111  136899999999886543 3322  35899999


Q ss_pred             ccCC
Q 012186          427 LSQN  430 (469)
Q Consensus       427 l~~~  430 (469)
                      ++.+
T Consensus       184 ls~n  187 (426)
T PRK15386        184 LHIE  187 (426)
T ss_pred             eccc
Confidence            9876

>KOG4308 consensus LRR-containing protein [Function unknown]

Probab=96.95  E-value=0.00028  Score=67.24  Aligned_cols=177  Identities=32%  Similarity=0.438  Sum_probs=90.2

Q ss_pred             ccEEEccCCCCchHH----HHHhhCCCCCCEEecCCCCCChHHHHHhh----CC-CCCCEEeccCCCCChhhHH----Hh
Q 012186          254 LKVLNLGFNEITDEC----LVHLKGLTNLESLNLDSCGIGDEGLVNLT----GL-CNLKCLELSDTQVGSSGLR----HL  320 (469)
Q Consensus       254 L~~L~l~~~~~~~~~----~~~~~~l~~L~~L~l~~~~~~~~~~~~~~----~~-~~L~~L~l~~~~~~~~~~~----~~  320 (469)
                      +..+.+.+|.+.+..    ...+...+.|..|++++|.+++.....+.    .. +.+++|.+..|.+......    .+
T Consensus        89 l~~L~L~~~~l~~~~~~~l~~~l~t~~~L~~L~l~~n~l~~~g~~~l~~~l~~~~~~l~~L~l~~c~l~~~g~~~l~~~L  168 (478)
T KOG4308|consen   89 LLHLSLANNRLGDRGAEELAQALKTLPTLGQLDLSGNNLGDEGARLLCEGLRLPQCLLQTLELVSCSLTSEGAAPLAAVL  168 (478)
T ss_pred             HHHhhhhhCccccchHHHHHHHhcccccHhHhhcccCCCccHhHHHHHhhcccchHHHHHHHhhcccccccchHHHHHHH
Confidence            667777777765432    23446667888888888877755544433    11 3455666666655443322    23


Q ss_pred             hCCCCCcEEecccCCCCchHH----Hhhh----CCCCCcEEEccCCCCCHHHH----HHHhcCCC-CCEeecCCCCCChh
Q 012186          321 SGLTNLESINLSFTGISDGSL----RKLA----GLSSLKSLNLDARQITDTGL----AALTSLTG-LTHLDLFGARITDS  387 (469)
Q Consensus       321 ~~~~~L~~L~l~~~~~~~~~~----~~~~----~~~~L~~L~l~~~~~~~~~~----~~l~~~~~-L~~L~l~~~~~~~~  387 (469)
                      ...+.++.++++.|.+.....    ..+.    ...++++|++.+|.++....    ..+...+. +.++++.+|++.+.
T Consensus       169 ~~~~~l~~l~l~~n~l~~~g~~~l~~~l~~~~~~~~~le~L~L~~~~~t~~~c~~l~~~l~~~~~~~~el~l~~n~l~d~  248 (478)
T KOG4308|consen  169 EKNEHLTELDLSLNGLIELGLLVLSQALESAASPLSSLETLKLSRCGVTSSSCALLDEVLASGESLLRELDLASNKLGDV  248 (478)
T ss_pred             hcccchhHHHHHhcccchhhhHHHhhhhhhhhcccccHHHHhhhhcCcChHHHHHHHHHHhccchhhHHHHHHhcCcchH
Confidence            345666777776665532221    1122    23456666666665554322    12223333 44556666555543


Q ss_pred             HHH----HhHcC-CCCCeeeeCCCCCCHHHHHHH----hcCCCCCeeeccCC
Q 012186          388 GAA----YLRNF-KNLRSLEICGGGLTDAGVKHI----KDLSSLTLLNLSQN  430 (469)
Q Consensus       388 ~~~----~~~~~-~~L~~L~l~~~~~~~~~~~~l----~~~~~L~~L~l~~~  430 (469)
                      +..    .+..+ +.+++++++.|.+++.....+    ..++.++.+.++.|
T Consensus       249 g~~~L~~~l~~~~~~l~~l~l~~nsi~~~~~~~L~~~l~~~~~l~~l~l~~n  300 (478)
T KOG4308|consen  249 GVEKLLPCLSVLSETLRVLDLSRNSITEKGVRDLAEVLVSCRQLEELSLSNN  300 (478)
T ss_pred             HHHHHHHHhcccchhhhhhhhhcCCccccchHHHHHHHhhhHHHHHhhcccC
Confidence            222    12222 344555555555554333222    23445555555555

>KOG4308 consensus LRR-containing protein [Function unknown]

Probab=96.94  E-value=0.00032  Score=66.88  Aligned_cols=108  Identities=32%  Similarity=0.456  Sum_probs=50.4

Q ss_pred             CCCCcEEecccCCCCchHHH----hhhCCCC-CcEEEccCCCCCHHHHHH----HhcC-CCCCEeecCCCCCChhHHH--
Q 012186          323 LTNLESINLSFTGISDGSLR----KLAGLSS-LKSLNLDARQITDTGLAA----LTSL-TGLTHLDLFGARITDSGAA--  390 (469)
Q Consensus       323 ~~~L~~L~l~~~~~~~~~~~----~~~~~~~-L~~L~l~~~~~~~~~~~~----l~~~-~~L~~L~l~~~~~~~~~~~--  390 (469)
                      ..+++.|++.+|.++.....    .+...+. +..+++..|.+.+.+...    +..+ +.+++++++.|.+++....  
T Consensus       203 ~~~le~L~L~~~~~t~~~c~~l~~~l~~~~~~~~el~l~~n~l~d~g~~~L~~~l~~~~~~l~~l~l~~nsi~~~~~~~L  282 (478)
T KOG4308|consen  203 LSSLETLKLSRCGVTSSSCALLDEVLASGESLLRELDLASNKLGDVGVEKLLPCLSVLSETLRVLDLSRNSITEKGVRDL  282 (478)
T ss_pred             cccHHHHhhhhcCcChHHHHHHHHHHhccchhhHHHHHHhcCcchHHHHHHHHHhcccchhhhhhhhhcCCccccchHHH
Confidence            34455555555554433222    1222233 444555555555443322    2223 3456666666665543332  


Q ss_pred             --HhHcCCCCCeeeeCCCCCCHHHHHHH----hcCCCCCeeeccCC
Q 012186          391 --YLRNFKNLRSLEICGGGLTDAGVKHI----KDLSSLTLLNLSQN  430 (469)
Q Consensus       391 --~~~~~~~L~~L~l~~~~~~~~~~~~l----~~~~~L~~L~l~~~  430 (469)
                        .+..++.++.+.+.+|.+.+......    .....+.++.+.++
T Consensus       283 ~~~l~~~~~l~~l~l~~n~l~~~~~~~~~~~l~~~~~~~~~~l~~~  328 (478)
T KOG4308|consen  283 AEVLVSCRQLEELSLSNNPLTDYGVELLLEALERKTPLLHLVLGGT  328 (478)
T ss_pred             HHHHhhhHHHHHhhcccCccccHHHHHHHHHhhhcccchhhhcccc
Confidence              33445566666666666655433222    22344555555544

>PF13516 LRR_6: Leucine Rich repeat; PDB: 3RGZ_A 3RJ0_A 3RIZ_A 3RGX_A 1DFJ_I 2BNH_A 3VQ1_A 3VQ2_A 2Z64_A 2OMX_A

Probab=96.65  E-value=0.00092  Score=34.21  Aligned_cols=24  Identities=33%  Similarity=0.470  Sum_probs=18.6

Q ss_pred             CcccccccccCCCCCHHHHHhhhh
Q 012186          444 LTGLVSLNVSNSRITSAGLRHLNH  467 (469)
Q Consensus       444 l~~L~~L~l~~~~~~~~~~~~l~~  467 (469)
                      +++|+.|+|++|+++++|+..|++
T Consensus         1 ~~~L~~L~l~~n~i~~~g~~~l~~   24 (24)
T PF13516_consen    1 NPNLETLDLSNNQITDEGASALAN   24 (24)
T ss_dssp             -TT-SEEE-TSSBEHHHHHHHHHH
T ss_pred             CCCCCEEEccCCcCCHHHHHHhCC
Confidence            478899999999999999998874

...

>KOG2739 consensus Leucine-rich acidic nuclear protein [Cell cycle control, cell division, chromosome partitioning; General function prediction only]

Probab=96.62  E-value=0.00089  Score=56.60  Aligned_cols=15  Identities=33%  Similarity=0.487  Sum_probs=7.2

Q ss_pred             ccCCCCCCEEEeccc
Q 012186          176 LSGLTNLKSLQISCS  190 (469)
Q Consensus       176 ~~~~~~L~~L~l~~~  190 (469)
                      +..+++|++|.+++|
T Consensus        61 ~P~Lp~LkkL~lsdn   75 (260)
T KOG2739|consen   61 FPKLPKLKKLELSDN   75 (260)
T ss_pred             CCCcchhhhhcccCC
Confidence            334445555555544

>smart00368 LRR_RI Leucine rich repeat, ribonuclease inhibitor type

Probab=96.03  E-value=0.005  Score=32.78  Aligned_cols=24  Identities=33%  Similarity=0.533  Sum_probs=21.4

Q ss_pred             cccccccccCCCCCHHHHHhhhhc
Q 012186          445 TGLVSLNVSNSRITSAGLRHLNHA  468 (469)
Q Consensus       445 ~~L~~L~l~~~~~~~~~~~~l~~~  468 (469)
                      ++|+.|+|++|.++++|...|+++
T Consensus         2 ~~L~~LdL~~N~i~~~G~~~L~~~   25 (28)
T smart00368        2 PSLRELDLSNNKLGDEGARALAEA   25 (28)
T ss_pred             CccCEEECCCCCCCHHHHHHHHHH
Confidence            578999999999999999998874

>smart00367 LRR_CC Leucine-rich repeat - CC (cysteine-containing) subfamily

Probab=95.95  E-value=0.0072  Score=31.54  Aligned_cols=24  Identities=33%  Similarity=0.484  Sum_probs=17.3

Q ss_pred             CcccccccccCC-CCCHHHHHhhhh
Q 012186          444 LTGLVSLNVSNS-RITSAGLRHLNH  467 (469)
Q Consensus       444 l~~L~~L~l~~~-~~~~~~~~~l~~  467 (469)
                      +++|+.|+|++| ++++.|+.++++
T Consensus         1 c~~L~~L~l~~C~~itD~gl~~l~~   25 (26)
T smart00367        1 CPNLRELDLSGCTNITDEGLQALAK   25 (26)
T ss_pred             CCCCCEeCCCCCCCcCHHHHHHHhc
Confidence            467777777777 477777777765

>smart00367 LRR_CC Leucine-rich repeat - CC (cysteine-containing) subfamily

Probab=94.36  E-value=0.05  Score=28.29  Aligned_cols=24  Identities=46%  Similarity=0.884  Sum_probs=15.9

Q ss_pred             CCCCCEEecCCCcccChhHhHhhh
Q 012186           80 CSNLQSLDFNFCIQISDGGLEHLR  103 (469)
Q Consensus        80 ~~~L~~L~l~~~~~~~~~~~~~l~  103 (469)
                      |++|+.|++++|..+++.+...+.
T Consensus         1 c~~L~~L~l~~C~~itD~gl~~l~   24 (26)
T smart00367        1 CPNLRELDLSGCTNITDEGLQALA   24 (26)
T ss_pred             CCCCCEeCCCCCCCcCHHHHHHHh
Confidence            566777777777777776655543

>PF13516 LRR_6: Leucine Rich repeat; PDB: 3RGZ_A 3RJ0_A 3RIZ_A 3RGX_A 1DFJ_I 2BNH_A 3VQ1_A 3VQ2_A 2Z64_A 2OMX_A

Probab=92.74  E-value=0.082  Score=26.81  Aligned_cols=14  Identities=50%  Similarity=0.636  Sum_probs=4.6

Q ss_pred             CCCEeecCCCCCCh
Q 012186          373 GLTHLDLFGARITD  386 (469)
Q Consensus       373 ~L~~L~l~~~~~~~  386 (469)
                      +|++|++++|++++
T Consensus         3 ~L~~L~l~~n~i~~   16 (24)
T PF13516_consen    3 NLETLDLSNNQITD   16 (24)
T ss_dssp             T-SEEE-TSSBEHH
T ss_pred             CCCEEEccCCcCCH
Confidence            33333443333333

...

>PF00560 LRR_1: Leucine Rich Repeat; InterPro: IPR001611 Leucine-rich repeats (LRR) consist of 2-45 motifs of 20-30 amino acids in length that generally folds into an arc or horseshoe shape []

Probab=91.92  E-value=0.053  Score=26.87  Aligned_cols=18  Identities=39%  Similarity=0.397  Sum_probs=9.1

Q ss_pred             ccEEEecCCCCChHhhHhh
Q 012186           59 LLSVDLSGSDVTDSGLIHL   77 (469)
Q Consensus        59 l~~L~l~~~~~~~~~~~~~   77 (469)
                      +++|++++|.++ .+|..|
T Consensus         2 L~~Ldls~n~l~-~ip~~~   19 (22)
T PF00560_consen    2 LEYLDLSGNNLT-SIPSSF   19 (22)
T ss_dssp             ESEEEETSSEES-EEGTTT
T ss_pred             ccEEECCCCcCE-eCChhh
Confidence            455555555555 344333

LRRs occur in proteins ranging from viruses to eukaryotes, and appear to provide a structural framework for the formation of protein-protein interactions [, ].Proteins containing LRRs include tyrosine kinase receptors, cell-adhesion molecules, virulence factors, and extracellular matrix-binding glycoproteins, and are involved in a variety of biological processes, including signal transduction, cell adhesion, DNA repair, recombination, transcription, RNA processing, disease resistance, apoptosis, and the immune response []. Sequence analyses of LRR proteins suggested the existence of several different subfamilies of LRRs. The significance of this classification is that repeats from different subfamilies never occur simultaneously and have most probably evolved independently. It is, however, now clear that all major classes of LRR have curved horseshoe structures with a parallel beta sheet on the concave side and mostly helical elements on the convex side. At least six families of LRR proteins, characterised by different lengths and consensus sequences of the repeats, have been identified. Eleven-residue segments of the LRRs (LxxLxLxxN/CxL), corresponding to the beta-strand and adjacent loop regions, are conserved in LRR proteins, whereas the remaining parts of the repeats (herein termed variable) may be very different. Despite the differences, each of the variable parts contains two half-turns at both ends and a "linear" segment (as the chain follows a linear path overall), usually formed by a helix, in the middle. The concave face and the adjacent loops are the most common protein interaction surfaces on LRR proteins. 3D structure of some LRR proteins-ligand complexes show that the concave surface of LRR domain is ideal for interaction with alpha-helix, thus supporting earlier conclusions that the elongated and curved LRR structure provides an outstanding framework for achieving diverse protein-protein interactions []. Molecular modeling suggests that the conserved pattern LxxLxL, which is shorter than the previously proposed LxxLxLxxN/CxL is sufficient to impart the characteristic horseshoe curvature to proteins with 20- to 30-residue repeats []. ; GO: 0005515 protein binding; PDB: 4ECO_B 2A0Z_A 3ULU_A 1ZIW_A 3ULV_A 1DCE_C 1LTX_A 3J0A_B 3A79_B 4FCG_A ....

>PF13504 LRR_7: Leucine rich repeat; PDB: 3OJA_B 3G06_A 1OOK_G 1QYY_G 1SQ0_B 1P9A_G 1GWB_A 1P8V_A 1M0Z_A 1U0N_D

Probab=91.65  E-value=0.071  Score=24.47  Aligned_cols=13  Identities=46%  Similarity=0.738  Sum_probs=5.5

Q ss_pred             ccccccccCCCCC
Q 012186          446 GLVSLNVSNSRIT  458 (469)
Q Consensus       446 ~L~~L~l~~~~~~  458 (469)
                      +|+.|++++|+++
T Consensus         2 ~L~~L~l~~n~L~   14 (17)
T PF13504_consen    2 NLRTLDLSNNRLT   14 (17)
T ss_dssp             T-SEEEETSS--S
T ss_pred             ccCEEECCCCCCC
Confidence            4555555555554

...

>smart00370 LRR Leucine-rich repeats, outliers

Probab=82.42  E-value=1.2  Score=22.93  Aligned_cols=14  Identities=29%  Similarity=0.498  Sum_probs=5.7

Q ss_pred             CCCEeecCCCCCCh
Q 012186          373 GLTHLDLFGARITD  386 (469)
Q Consensus       373 ~L~~L~l~~~~~~~  386 (469)
                      +|+.|++++|.+..
T Consensus         3 ~L~~L~L~~N~l~~   16 (26)
T smart00370        3 NLRELDLSNNQLSS   16 (26)
T ss_pred             CCCEEECCCCcCCc
Confidence            34444444444333

>smart00369 LRR_TYP Leucine-rich repeats, typical (most populated) subfamily

Probab=82.42  E-value=1.2  Score=22.93  Aligned_cols=14  Identities=29%  Similarity=0.498  Sum_probs=5.7

Q ss_pred             CCCEeecCCCCCCh
Q 012186          373 GLTHLDLFGARITD  386 (469)
Q Consensus       373 ~L~~L~l~~~~~~~  386 (469)
                      +|+.|++++|.+..
T Consensus         3 ~L~~L~L~~N~l~~   16 (26)
T smart00369        3 NLRELDLSNNQLSS   16 (26)
T ss_pred             CCCEEECCCCcCCc
Confidence            34444444444333

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

ID	Length	Definition	E-value
Query	469
2omy_A	461	Crystal Structure Of Inla S192n/hec1 Complex Length		3e-11
2omv_A	461	Crystal Structure Of Inla S192n Y369s/hec1 Complex		3e-11
1o6s_A	466	Internalin (Listeria Monocytogenes) E-Cadherin (Hum		1e-10
2omz_A	466	Crystal Structure Of Inla Y369a/hec1 Complex Length		1e-10
2omx_A	462	Crystal Structure Of Inla S192n G194s+sHEC1 COMPLEX		1e-10
2omt_A	462	Crystal Structure Of Inla G194s+sHEC1 COMPLEX Lengt		2e-10
2omu_A	462	Crystal Structure Of Inla G194s+s Y369s/hec1 Comple		2e-10
4fmz_A	347	Crystal Structure Of An Internalin (Inlf) From List		5e-08
2a0z_A	705	The Molecular Structure Of Toll-like Receptor 3 Lig		1e-04
3ulu_A	694	Structure Of Quaternary Complex Of Human Tlr3ecd Wi		1e-04
1ziw_A	680	Human Toll-Like Receptor 3 Extracellular Domain Str		2e-04
1h6u_A	308	Internalin H: Crystal Structure Of Fused N-Terminal		2e-04
4aw4_A	311	Engineered Variant Of Listeria Monocytogenes Inlb I		6e-04
3zyn_A	321	Crystal Structure Of The N-Terminal Leucine Rich Re		7e-04
1m9s_A	605	Crystal Structure Of Internalin B (Inlb), A Listeri		8e-04
3cig_A	697	Crystal Structure Of Mouse Tlr3 Ectodomain Length =		9e-04

>pdb|2OMY|A Chain A, Crystal Structure Of Inla S192n/hec1 Complex Length = 461

Iteration: 1
 Score = 66.6 bits (161), Expect = 3e-11,   Method: Compositional matrix adjust.
 Identities = 86/264 (32%), Positives = 129/264 (48%), Gaps = 31/264 (11%)
Query: 93  QISDGGLEHLRGLSNLTSLSFRRNNAITAQGMKAFAGLINLVKLDLERCTRIHGGLVNLK 152
           QI+D  +  L  L+NLT L+   NN IT   +     L NL +L+L   T     +  L 
Sbjct: 96  QIAD--ITPLANLTNLTGLTLF-NNQIT--DIDPLKNLTNLNRLELSSNTI--SDISALS 148
Query: 153 GLMKLESLNIKWCNCITDSDMKPLSGLTNLKSLQISCSKVTDSGIAYXXXXXXXXXXXXE 212
           GL  L+ LN  + N +TD  +KPL+ LT L+ L IS +KV+D  +              E
Sbjct: 149 GLTSLQQLN--FGNQVTD--LKPLANLTTLERLDISSNKVSDISV-------LAKLTNLE 197
Query: 213 GCPVTAACLDSLSALG---SLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECL 269
               T   +  ++ LG   +L  L+LN  QL D G    + + +L  L+L  N+I++  L
Sbjct: 198 SLIATNNQISDITPLGILTNLDELSLNGNQLKDIGT--LASLTNLTDLDLANNQISN--L 253
Query: 270 VHLKGLTNLESLNLDSCGIGDEGLVNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESI 329
             L GLT L  L L +  I +  +  L GL  L  LEL++ Q+    +  +S L NL  +
Sbjct: 254 APLSGLTKLTELKLGANQISN--ISPLAGLTALTNLELNENQL--EDISPISNLKNLTYL 309
Query: 330 NLSFTGISDGSLRKLAGLSSLKSL 353
            L F  ISD  +  ++ L+ L+ L
Sbjct: 310 TLYFNNISD--ISPVSSLTKLQRL 331

>pdb|2OMV|A Chain A, Crystal Structure Of Inla S192n Y369s/hec1 Complex Length = 461

Iteration: 1
 Score = 66.2 bits (160), Expect = 3e-11,   Method: Compositional matrix adjust.
 Identities = 86/264 (32%), Positives = 129/264 (48%), Gaps = 31/264 (11%)
Query: 93  QISDGGLEHLRGLSNLTSLSFRRNNAITAQGMKAFAGLINLVKLDLERCTRIHGGLVNLK 152
           QI+D  +  L  L+NLT L+   NN IT   +     L NL +L+L   T     +  L 
Sbjct: 96  QIAD--ITPLANLTNLTGLTLF-NNQIT--DIDPLKNLTNLNRLELSSNTI--SDISALS 148
Query: 153 GLMKLESLNIKWCNCITDSDMKPLSGLTNLKSLQISCSKVTDSGIAYXXXXXXXXXXXXE 212
           GL  L+ LN  + N +TD  +KPL+ LT L+ L IS +KV+D  +              E
Sbjct: 149 GLTSLQQLN--FGNQVTD--LKPLANLTTLERLDISSNKVSDISV-------LAKLTNLE 197
Query: 213 GCPVTAACLDSLSALG---SLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECL 269
               T   +  ++ LG   +L  L+LN  QL D G    + + +L  L+L  N+I++  L
Sbjct: 198 SLIATNNQISDITPLGILTNLDELSLNGNQLKDIGT--LASLTNLTDLDLANNQISN--L 253
Query: 270 VHLKGLTNLESLNLDSCGIGDEGLVNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESI 329
             L GLT L  L L +  I +  +  L GL  L  LEL++ Q+    +  +S L NL  +
Sbjct: 254 APLSGLTKLTELKLGANQISN--ISPLAGLTALTNLELNENQL--EDISPISNLKNLTYL 309
Query: 330 NLSFTGISDGSLRKLAGLSSLKSL 353
            L F  ISD  +  ++ L+ L+ L
Sbjct: 310 TLYFNNISD--ISPVSSLTKLQRL 331

>pdb|1O6S|A Chain A, Internalin (Listeria Monocytogenes) E-Cadherin (Human) Recognition Complex Length = 466

Iteration: 1
 Score = 64.3 bits (155), Expect = 1e-10,   Method: Compositional matrix adjust.
 Identities = 85/264 (32%), Positives = 128/264 (48%), Gaps = 31/264 (11%)
Query: 93  QISDGGLEHLRGLSNLTSLSFRRNNAITAQGMKAFAGLINLVKLDLERCTRIHGGLVNLK 152
           QI+D  +  L  L+NLT L+   NN IT   +     L NL +L+L   T     +  L 
Sbjct: 101 QIAD--ITPLANLTNLTGLTLF-NNQIT--DIDPLKNLTNLNRLELSSNTI--SDISALS 153
Query: 153 GLMKLESLNIKWCNCITDSDMKPLSGLTNLKSLQISCSKVTDSGIAYXXXXXXXXXXXXE 212
           GL  L+ L   + N +TD  +KPL+ LT L+ L IS +KV+D  +              E
Sbjct: 154 GLTSLQQL--SFGNQVTD--LKPLANLTTLERLDISSNKVSDISV-------LAKLTNLE 202
Query: 213 GCPVTAACLDSLSALG---SLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECL 269
               T   +  ++ LG   +L  L+LN  QL D G    + + +L  L+L  N+I++  L
Sbjct: 203 SLIATNNQISDITPLGILTNLDELSLNGNQLKDIGT--LASLTNLTDLDLANNQISN--L 258
Query: 270 VHLKGLTNLESLNLDSCGIGDEGLVNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESI 329
             L GLT L  L L +  I +  +  L GL  L  LEL++ Q+    +  +S L NL  +
Sbjct: 259 APLSGLTKLTELKLGANQISN--ISPLAGLTALTNLELNENQL--EDISPISNLKNLTYL 314
Query: 330 NLSFTGISDGSLRKLAGLSSLKSL 353
            L F  ISD  +  ++ L+ L+ L
Sbjct: 315 TLYFNNISD--ISPVSSLTKLQRL 336

>pdb|2OMZ|A Chain A, Crystal Structure Of Inla Y369a/hec1 Complex Length = 466

Iteration: 1
 Score = 64.3 bits (155), Expect = 1e-10,   Method: Compositional matrix adjust.
 Identities = 85/264 (32%), Positives = 128/264 (48%), Gaps = 31/264 (11%)
Query: 93  QISDGGLEHLRGLSNLTSLSFRRNNAITAQGMKAFAGLINLVKLDLERCTRIHGGLVNLK 152
           QI+D  +  L  L+NLT L+   NN IT   +     L NL +L+L   T     +  L 
Sbjct: 100 QIAD--ITPLANLTNLTGLTLF-NNQIT--DIDPLKNLTNLNRLELSSNTI--SDISALS 152
Query: 153 GLMKLESLNIKWCNCITDSDMKPLSGLTNLKSLQISCSKVTDSGIAYXXXXXXXXXXXXE 212
           GL  L+ L   + N +TD  +KPL+ LT L+ L IS +KV+D  +              E
Sbjct: 153 GLTSLQQL--SFGNQVTD--LKPLANLTTLERLDISSNKVSDISV-------LAKLTNLE 201
Query: 213 GCPVTAACLDSLSALG---SLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECL 269
               T   +  ++ LG   +L  L+LN  QL D G    + + +L  L+L  N+I++  L
Sbjct: 202 SLIATNNQISDITPLGILTNLDELSLNGNQLKDIGT--LASLTNLTDLDLANNQISN--L 257
Query: 270 VHLKGLTNLESLNLDSCGIGDEGLVNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESI 329
             L GLT L  L L +  I +  +  L GL  L  LEL++ Q+    +  +S L NL  +
Sbjct: 258 APLSGLTKLTELKLGANQISN--ISPLAGLTALTNLELNENQL--EDISPISNLKNLTYL 313
Query: 330 NLSFTGISDGSLRKLAGLSSLKSL 353
            L F  ISD  +  ++ L+ L+ L
Sbjct: 314 TLYFNNISD--ISPVSSLTKLQRL 335

>pdb|2OMX|A Chain A, Crystal Structure Of Inla S192n G194s+sHEC1 COMPLEX Length = 462

Iteration: 1
 Score = 64.3 bits (155), Expect = 1e-10,   Method: Compositional matrix adjust.
 Identities = 83/271 (30%), Positives = 127/271 (46%), Gaps = 45/271 (16%)
Query: 92  IQISDGGLEHLRGLSNLTSLS--FRRNNAITAQGMKAFAGLINLVKLDLERCTRIHGGLV 149
           I  S+  L  +  L NLT L      NN I    +   A L NL  L L      +  + 
Sbjct: 68  INFSNNQLTDITPLKNLTKLVDILMNNNQIA--DITPLANLTNLTGLTL-----FNNQIT 120
Query: 150 NLKGLMKLESLNIKWCNCITDSDMKPLSGLTNLKSLQISCSKVTDSGIAYXXXXXXXXXX 209
           ++  L  L +LN    +  T SD+  LSGLT+L+ L  S ++VTD               
Sbjct: 121 DIDPLKNLTNLNRLELSSNTISDISALSGLTSLQQLNFSSNQVTD--------------- 165
Query: 210 XXEGCPVTAACLDSLSALGSLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECL 269
                      L  L+ L +L  L+++  ++SD      +K+ +L+ L    N+I+D  +
Sbjct: 166 -----------LKPLANLTTLERLDISSNKVSD--ISVLAKLTNLESLIATNNQISD--I 210
Query: 270 VHLKGLTNLESLNLDSCGIGDEGLVNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESI 329
             L  LTNL+ L+L+   + D G   L  L NL  L+L++ Q+  S L  LSGLT L  +
Sbjct: 211 TPLGILTNLDELSLNGNQLKDIG--TLASLTNLTDLDLANNQI--SNLAPLSGLTKLTEL 266
Query: 330 NLSFTGISDGSLRKLAGLSSLKSLNLDARQI 360
            L    IS+  +  LAGL++L +L L+  Q+
Sbjct: 267 KLGANQISN--ISPLAGLTALTNLELNENQL 295

>pdb|2OMT|A Chain A, Crystal Structure Of Inla G194s+sHEC1 COMPLEX Length = 462

Iteration: 1
 Score = 64.3 bits (155), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 83/271 (30%), Positives = 127/271 (46%), Gaps = 45/271 (16%)
Query: 92  IQISDGGLEHLRGLSNLTSLS--FRRNNAITAQGMKAFAGLINLVKLDLERCTRIHGGLV 149
           I  S+  L  +  L NLT L      NN I    +   A L NL  L L      +  + 
Sbjct: 68  INFSNNQLTDITPLKNLTKLVDILMNNNQIA--DITPLANLTNLTGLTL-----FNNQIT 120
Query: 150 NLKGLMKLESLNIKWCNCITDSDMKPLSGLTNLKSLQISCSKVTDSGIAYXXXXXXXXXX 209
           ++  L  L +LN    +  T SD+  LSGLT+L+ L  S ++VTD               
Sbjct: 121 DIDPLKNLTNLNRLELSSNTISDISALSGLTSLQQLSFSSNQVTD--------------- 165
Query: 210 XXEGCPVTAACLDSLSALGSLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECL 269
                      L  L+ L +L  L+++  ++SD      +K+ +L+ L    N+I+D  +
Sbjct: 166 -----------LKPLANLTTLERLDISSNKVSD--ISVLAKLTNLESLIATNNQISD--I 210
Query: 270 VHLKGLTNLESLNLDSCGIGDEGLVNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESI 329
             L  LTNL+ L+L+   + D G   L  L NL  L+L++ Q+  S L  LSGLT L  +
Sbjct: 211 TPLGILTNLDELSLNGNQLKDIG--TLASLTNLTDLDLANNQI--SNLAPLSGLTKLTEL 266
Query: 330 NLSFTGISDGSLRKLAGLSSLKSLNLDARQI 360
            L    IS+  +  LAGL++L +L L+  Q+
Sbjct: 267 KLGANQISN--ISPLAGLTALTNLELNENQL 295

>pdb|2OMU|A Chain A, Crystal Structure Of Inla G194s+s Y369s/hec1 Complex Length = 462

Iteration: 1
 Score = 63.9 bits (154), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 83/271 (30%), Positives = 127/271 (46%), Gaps = 45/271 (16%)
Query: 92  IQISDGGLEHLRGLSNLTSLS--FRRNNAITAQGMKAFAGLINLVKLDLERCTRIHGGLV 149
           I  S+  L  +  L NLT L      NN I    +   A L NL  L L      +  + 
Sbjct: 68  INFSNNQLTDITPLKNLTKLVDILMNNNQIA--DITPLANLTNLTGLTL-----FNNQIT 120
Query: 150 NLKGLMKLESLNIKWCNCITDSDMKPLSGLTNLKSLQISCSKVTDSGIAYXXXXXXXXXX 209
           ++  L  L +LN    +  T SD+  LSGLT+L+ L  S ++VTD               
Sbjct: 121 DIDPLKNLTNLNRLELSSNTISDISALSGLTSLQQLSFSSNQVTD--------------- 165
Query: 210 XXEGCPVTAACLDSLSALGSLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECL 269
                      L  L+ L +L  L+++  ++SD      +K+ +L+ L    N+I+D  +
Sbjct: 166 -----------LKPLANLTTLERLDISSNKVSD--ISVLAKLTNLESLIATNNQISD--I 210
Query: 270 VHLKGLTNLESLNLDSCGIGDEGLVNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESI 329
             L  LTNL+ L+L+   + D G   L  L NL  L+L++ Q+  S L  LSGLT L  +
Sbjct: 211 TPLGILTNLDELSLNGNQLKDIG--TLASLTNLTDLDLANNQI--SNLAPLSGLTKLTEL 266
Query: 330 NLSFTGISDGSLRKLAGLSSLKSLNLDARQI 360
            L    IS+  +  LAGL++L +L L+  Q+
Sbjct: 267 KLGANQISN--ISPLAGLTALTNLELNENQL 295

>pdb|4FMZ|A Chain A, Crystal Structure Of An Internalin (Inlf) From Listeria Monocytogenes Str. 4b F2365 At 1.91 A Resolution Length = 347

Iteration: 1
 Score = 55.8 bits (133), Expect = 5e-08,   Method: Compositional matrix adjust.
 Identities = 90/303 (29%), Positives = 135/303 (44%), Gaps = 47/303 (15%)
Query: 81  SNLQSLDFNFCIQISDGGLEHLRGLSNLTSLS--FRRNNAITAQGMKAFAGLINLVKLDL 138
           +NL+ L+ N   QI+D     +  LSNL  L+  +   N IT   + A   L NL +L L
Sbjct: 66  TNLEYLNLNGN-QITD-----ISPLSNLVKLTNLYIGTNKIT--DISALQNLTNLRELYL 117
Query: 139 ERCTRIHGGLVNLKGLMKLESLNIKWCNCITDSDMKPLSGLTNLKSLQISCSKVTD-SGI 197
                    +  L  L K  SLN+   + +  SD+ PLS  T L  L ++ SKV D + I
Sbjct: 118 NEDNI--SDISPLANLTKXYSLNLGANHNL--SDLSPLSNXTGLNYLTVTESKVKDVTPI 173
Query: 198 AYXXXXXXXXXXXXEGCPVTAACLDSLSALGSLFYLNLNRCQLSD-DGCEKFSKIGSLKV 256
           A             +        +  L++L SL Y      Q++D       +++ SLK+
Sbjct: 174 ANLTDLYSLSLNYNQ-----IEDISPLASLTSLHYFTAYVNQITDITPVANXTRLNSLKI 228
Query: 257 -------------------LNLGFNEITDECLVHLKGLTNLESLNLDSCGIGDEGLVNLT 297
                              L +G N+I+D   V  K LT L+ LN+ S  I D  ++N  
Sbjct: 229 GNNKITDLSPLANLSQLTWLEIGTNQISDINAV--KDLTKLKXLNVGSNQISDISVLN-- 284
Query: 298 GLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISDGSLRKLAGLSSLKSLNLDA 357
            L  L  L L++ Q+G+     + GLTNL ++ LS   I+D  +R LA LS   S +  A
Sbjct: 285 NLSQLNSLFLNNNQLGNEDXEVIGGLTNLTTLFLSQNHITD--IRPLASLSKXDSADF-A 341
Query: 358 RQI 360
            Q+
Sbjct: 342 NQV 344

>pdb|2A0Z|A Chain A, The Molecular Structure Of Toll-like Receptor 3 Ligand Binding Domain Length = 705

Iteration: 1
 Score = 44.3 bits (103), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 73/290 (25%), Positives = 111/290 (38%), Gaps = 67/290 (23%)
Query: 113 FRRNNAITAQGMKAFAGLINLVKLDLERCTRIHGGLVNLKGLMKLESLNIKWCNCITDSD 172
           F   N I      +  GL N+  L+L+R        ++L  L K++  + +W  C+   +
Sbjct: 283 FLEYNNIQHLFSHSLHGLFNVRYLNLKRSFTKQS--ISLASLPKIDDFSFQWLKCLEHLN 340
Query: 173 MK----P------LSGLTNLKSLQISCSKVTDSGIAYXXXXXXXXXXXXEGCPVTAACLD 222
           M+    P       +GL NLK L +S S  +   +                   T     
Sbjct: 341 MEDNDIPGIKSNMFTGLINLKYLSLSNSFTSLRTL-------------------TNETFV 381
Query: 223 SLSALGSLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECL-VHLKGLTN---- 277
           SL A   L  LNL + ++S    + FS +G L+VL+LG NEI  E      +GL N    
Sbjct: 382 SL-AHSPLHILNLTKNKISKIESDAFSWLGHLEVLDLGLNEIGQELTGQEWRGLENIFEI 440
Query: 278 --------------------LESLNLDSCGIG--DEGLVNLTGLCNLKCLELSDTQVGSS 315
                               L+ L L    +   D        L NL  L+LS+  + + 
Sbjct: 441 YLSYNKYLQLTRNSFALVPSLQRLMLRRVALKNVDSSPSPFQPLRNLTILDLSNNNIANI 500
Query: 316 GLRHLSGLTNLESINLSFTGISD--------GSLRKLAGLSSLKSLNLDA 357
               L GL  LE ++L    ++         G +  L GLS L  LNL++
Sbjct: 501 NDDMLEGLEKLEILDLQHNNLARLWKHANPGGPIYFLKGLSHLHILNLES 550

>pdb|3ULU|A Chain A, Structure Of Quaternary Complex Of Human Tlr3ecd With Three Fabs (Form1) Length = 694

Iteration: 1
 Score = 44.3 bits (103), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 73/290 (25%), Positives = 111/290 (38%), Gaps = 67/290 (23%)
Query: 113 FRRNNAITAQGMKAFAGLINLVKLDLERCTRIHGGLVNLKGLMKLESLNIKWCNCITDSD 172
           F   N I      +  GL N+  L+L+R        ++L  L K++  + +W  C+   +
Sbjct: 288 FLEYNNIQHLFSHSLHGLFNVRYLNLKRSFTKQS--ISLASLPKIDDFSFQWLKCLEHLN 345
Query: 173 MK----P------LSGLTNLKSLQISCSKVTDSGIAYXXXXXXXXXXXXEGCPVTAACLD 222
           M+    P       +GL NLK L +S S  +   +                   T     
Sbjct: 346 MEDNDIPGIKSNMFTGLINLKYLSLSNSFTSLRTL-------------------TNETFV 386
Query: 223 SLSALGSLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECL-VHLKGLTN---- 277
           SL A   L  LNL + ++S    + FS +G L+VL+LG NEI  E      +GL N    
Sbjct: 387 SL-AHSPLHILNLTKNKISKIESDAFSWLGHLEVLDLGLNEIGQELTGQEWRGLENIFEI 445
Query: 278 --------------------LESLNLDSCGIG--DEGLVNLTGLCNLKCLELSDTQVGSS 315
                               L+ L L    +   D        L NL  L+LS+  + + 
Sbjct: 446 YLSYNKYLQLTRNSFALVPSLQRLMLRRVALKNVDSSPSPFQPLRNLTILDLSNNNIANI 505
Query: 316 GLRHLSGLTNLESINLSFTGISD--------GSLRKLAGLSSLKSLNLDA 357
               L GL  LE ++L    ++         G +  L GLS L  LNL++
Sbjct: 506 NDDMLEGLEKLEILDLQHNNLARLWKHANPGGPIYFLKGLSHLHILNLES 555

>pdb|1ZIW|A Chain A, Human Toll-Like Receptor 3 Extracellular Domain Structure Length = 680

Iteration: 1
 Score = 44.3 bits (103), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 73/290 (25%), Positives = 111/290 (38%), Gaps = 67/290 (23%)
Query: 113 FRRNNAITAQGMKAFAGLINLVKLDLERCTRIHGGLVNLKGLMKLESLNIKWCNCITDSD 172
           F   N I      +  GL N+  L+L+R        ++L  L K++  + +W  C+   +
Sbjct: 278 FLEYNNIQHLFSHSLHGLFNVRYLNLKRSFTKQS--ISLASLPKIDDFSFQWLKCLEHLN 335
Query: 173 MK----P------LSGLTNLKSLQISCSKVTDSGIAYXXXXXXXXXXXXEGCPVTAACLD 222
           M+    P       +GL NLK L +S S  +   +                   T     
Sbjct: 336 MEDNDIPGIKSNMFTGLINLKYLSLSNSFTSLRTL-------------------TNETFV 376
Query: 223 SLSALGSLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECL-VHLKGLTN---- 277
           SL A   L  LNL + ++S    + FS +G L+VL+LG NEI  E      +GL N    
Sbjct: 377 SL-AHSPLHILNLTKNKISKIESDAFSWLGHLEVLDLGLNEIGQELTGQEWRGLENIFEI 435
Query: 278 --------------------LESLNLDSCGIG--DEGLVNLTGLCNLKCLELSDTQVGSS 315
                               L+ L L    +   D        L NL  L+LS+  + + 
Sbjct: 436 YLSYNKYLQLTRNSFALVPSLQRLMLRRVALKNVDSSPSPFQPLRNLTILDLSNNNIANI 495
Query: 316 GLRHLSGLTNLESINLSFTGISD--------GSLRKLAGLSSLKSLNLDA 357
               L GL  LE ++L    ++         G +  L GLS L  LNL++
Sbjct: 496 NDDMLEGLEKLEILDLQHNNLARLWKHANPGGPIYFLKGLSHLHILNLES 545

>pdb|1H6U|A Chain A, Internalin H: Crystal Structure Of Fused N-Terminal Domains Length = 308

Iteration: 1
 Score = 43.5 bits (101), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 50/157 (31%), Positives = 81/157 (51%), Gaps = 18/157 (11%)
Query: 216 VTAACLD---SLSALGS-------LFYLN-LNRCQLSDDGCEKFSKIGSL-KVLNLGFNE 263
           VT A LD   +LSA G+       + YLN L   +L D+     + + +L K+  L  + 
Sbjct: 35  VTQADLDGITTLSAFGTGVTTIEGVQYLNNLIGLELKDNQITDLAPLKNLTKITELELSG 94
Query: 264 ITDECLVHLKGLTNLESLNLDSCGIGDEGLVNLTGLCNLKCLELSDTQVGSSGLRHLSGL 323
              + +  + GL ++++L+L S  I D  +  L GL NL+ L L   Q+  + +  L+GL
Sbjct: 95  NPLKNVSAIAGLQSIKTLDLTSTQITD--VTPLAGLSNLQVLYLDLNQI--TNISPLAGL 150
Query: 324 TNLESINLSFTGISDGSLRKLAGLSSLKSLNLDARQI 360
           TNL+ +++    +SD  L  LA LS L +L  D  +I
Sbjct: 151 TNLQYLSIGNAQVSD--LTPLANLSKLTTLKADDNKI 185

>pdb|4AW4|A Chain A, Engineered Variant Of Listeria Monocytogenes Inlb Internalin Domain With An Additional Leucine Rich Repeat Inserted Length = 311

Iteration: 1
 Score = 42.4 bits (98), Expect = 6e-04,   Method: Compositional matrix adjust.
 Identities = 64/194 (32%), Positives = 93/194 (47%), Gaps = 19/194 (9%)
Query: 170 DSDMKPLSG---LTNLKSLQISCSKVTD-SGIAYXXXXXXXXXXXXEGCPVTAACLDSLS 225
           +SD+K + G   L NL SL +S +++TD S I Y            +   +    L +L 
Sbjct: 53  NSDIKSVQGIQYLPNLTSLNLSNNQITDISPIQYLPNVTKLFLNGNKLTDIKP--LANLK 110
Query: 226 ALGSLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNLDS 285
            LG LF L+ N+ +      +           N G ++I    LVHL     LESL L +
Sbjct: 111 NLGWLF-LDENKVKDLSSLKDLKKLKSLSLEHN-GISDIN--GLVHLP---QLESLYLGN 163
Query: 286 CGIGDEGLVNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISDGSLRKLA 345
             I D  +  L+ L  L  L L D Q+  S +  L+GLT L+++ LS   ISD  LR LA
Sbjct: 164 NKITD--ITVLSRLTKLDTLSLEDNQI--SDIVPLAGLTKLQNLYLSKNHISD--LRALA 217
Query: 346 GLSSLKSLNLDARQ 359
           GL +L  L L +++
Sbjct: 218 GLKNLDVLELFSQE 231

>pdb|3ZYN|A Chain A, Crystal Structure Of The N-Terminal Leucine Rich Repeats Of Netrin-G Ligand-3 Length = 321

Iteration: 1
 Score = 42.0 bits (97), Expect = 7e-04,   Method: Compositional matrix adjust.
 Identities = 41/141 (29%), Positives = 61/141 (43%), Gaps = 6/141 (4%)
Query: 216 VTAACLDSLSALGSLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLG-FNEITDECLVHLKG 274
           V     + LS L  L+   L    +       F+++ SL+ L+LG    +        +G
Sbjct: 98  VPTQAFEYLSKLRELW---LRNNPIESIPSYAFNRVPSLRRLDLGELKRLEYISEAAFEG 154
Query: 275 LTNLESLNLDSCGIGDEGLVNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSFT 334
           L NL  LNL  C + D  + NLT L  L+ LELS  ++         GLT+L  + L   
Sbjct: 155 LVNLRYLNLGMCNLKD--IPNLTALVRLEELELSGNRLDLIRPGSFQGLTSLRKLWLMHA 212
Query: 335 GISDGSLRKLAGLSSLKSLNL 355
            ++         L SL+ LNL
Sbjct: 213 QVATIERNAFDDLKSLEELNL 233

>pdb|1M9S|A Chain A, Crystal Structure Of Internalin B (Inlb), A Listeria Monocytogenes Virulence Protein Containing Sh3-Like Domains Length = 605

Iteration: 1
 Score = 42.0 bits (97), Expect = 8e-04,   Method: Compositional matrix adjust.
 Identities = 38/91 (41%), Positives = 51/91 (56%), Gaps = 9/91 (9%)
Query: 269 LVHLKGLTNLESLNLDSCGIGDEGLVNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLES 328
           LVHL     LESL L +  I D  +  L+ L  L  L L D Q+  S +  L+GLT L++
Sbjct: 127 LVHL---PQLESLYLGNNKITD--ITVLSRLTKLDTLSLEDNQI--SDIVPLAGLTKLQN 179
Query: 329 INLSFTGISDGSLRKLAGLSSLKSLNLDARQ 359
           + LS   ISD  LR LAGL +L  L L +++
Sbjct: 180 LYLSKNHISD--LRALAGLKNLDVLELFSQE 208

>pdb|3CIG|A Chain A, Crystal Structure Of Mouse Tlr3 Ectodomain Length = 697

Iteration: 1
 Score = 41.6 bits (96), Expect = 9e-04,   Method: Compositional matrix adjust.
 Identities = 78/323 (24%), Positives = 120/323 (37%), Gaps = 69/323 (21%)
Query: 80  CSNLQSLDFNFCIQISDGGLEHLRGLSNLTSLSFRRNNAITAQGMKAFAGLINLVKLDLE 139
            +NL  LD ++   + D G      L +L  LS   NN I     ++F GL NL  L L+
Sbjct: 247 WTNLTQLDLSYN-NLHDVGNGSFSYLPSLRYLSLEYNN-IQRLSPRSFYGLSNLRYLSLK 304
Query: 140 RCTRIHGGLVNLKGLMKLESLNIKWC----------NCITDSDMKPLSGLTNLKSLQISC 189
           R        V+L     ++  + +W           N I  +     +GL +LK L +S 
Sbjct: 305 RAFTKQS--VSLASHPNIDDFSFQWLKYLEYLNMDDNNIPSTKSNTFTGLVSLKYLSLSK 362
Query: 190 SKVTDSGIAYXXXXXXXXXXXXEGCPVTAACLDSLSALGSLFYLNLNRCQLSDDGCEKFS 249
           +  +   +                   T     SL A   L  LNL +  +S      FS
Sbjct: 363 TFTSLQTL-------------------TNETFVSL-AHSPLLTLNLTKNHISKIANGTFS 402
Query: 250 KIGSLKVLNLGFNEITDECL-VHLKGLTNL--------ESLNLDSCGIG----------- 289
            +G L++L+LG NEI  +      +GL N+        + L L +               
Sbjct: 403 WLGQLRILDLGLNEIEQKLSGQEWRGLRNIFEIYLSYNKYLQLSTSSFALVPSLQRLMLR 462
Query: 290 -------DEGLVNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISD---- 338
                  D        L NL  L+LS+  + +     L GL NLE ++     ++     
Sbjct: 463 RVALKNVDISPSPFRPLRNLTILDLSNNNIANINEDLLEGLENLEILDFQHNNLARLWKR 522
Query: 339 ----GSLRKLAGLSSLKSLNLDA 357
               G +  L GLS L  LNL++
Sbjct: 523 ANPGGPVNFLKGLSHLHILNLES 545

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	469
3ogk_B	592	Coronatine-insensitive protein 1; leucine rich rep	3e-48
3ogk_B	592	Coronatine-insensitive protein 1; leucine rich rep	1e-36
3ogk_B	592	Coronatine-insensitive protein 1; leucine rich rep	7e-30
3ogk_B	592	Coronatine-insensitive protein 1; leucine rich rep	2e-26
3ogk_B	592	Coronatine-insensitive protein 1; leucine rich rep	1e-23
3ogk_B	592	Coronatine-insensitive protein 1; leucine rich rep	7e-14
2p1m_B	594	Transport inhibitor response 1 protein; F-BOX, leu	3e-47
2p1m_B	594	Transport inhibitor response 1 protein; F-BOX, leu	5e-35
2p1m_B	594	Transport inhibitor response 1 protein; F-BOX, leu	4e-29
2p1m_B	594	Transport inhibitor response 1 protein; F-BOX, leu	3e-23
2p1m_B	594	Transport inhibitor response 1 protein; F-BOX, leu	6e-13
1o6v_A	466	Internalin A; bacterial infection, extracellular r	2e-45
1o6v_A	466	Internalin A; bacterial infection, extracellular r	2e-42
1o6v_A	466	Internalin A; bacterial infection, extracellular r	5e-42
1o6v_A	466	Internalin A; bacterial infection, extracellular r	6e-39
4fmz_A	347	Internalin; leucine rich repeat, structural genomi	6e-43
4fmz_A	347	Internalin; leucine rich repeat, structural genomi	6e-42
4fmz_A	347	Internalin; leucine rich repeat, structural genomi	1e-41
4fmz_A	347	Internalin; leucine rich repeat, structural genomi	3e-38
4fmz_A	347	Internalin; leucine rich repeat, structural genomi	5e-37
1z7x_W	461	Ribonuclease inhibitor; leucine-rich repeat, enzym	2e-38
1z7x_W	461	Ribonuclease inhibitor; leucine-rich repeat, enzym	5e-35
1z7x_W	461	Ribonuclease inhibitor; leucine-rich repeat, enzym	7e-33
1m9s_A	605	Internalin B; cell invasion, GW domains, SH3 domai	1e-33
1m9s_A	605	Internalin B; cell invasion, GW domains, SH3 domai	2e-27
1m9s_A	605	Internalin B; cell invasion, GW domains, SH3 domai	4e-26
1ziw_A	680	TOLL-like receptor 3; innate immunity, immune syst	3e-33
1ziw_A	680	TOLL-like receptor 3; innate immunity, immune syst	2e-32
1ziw_A	680	TOLL-like receptor 3; innate immunity, immune syst	2e-31
1ziw_A	680	TOLL-like receptor 3; innate immunity, immune syst	2e-30
1ziw_A	680	TOLL-like receptor 3; innate immunity, immune syst	5e-29
1ziw_A	680	TOLL-like receptor 3; innate immunity, immune syst	1e-24
1ziw_A	680	TOLL-like receptor 3; innate immunity, immune syst	2e-21
1ziw_A	680	TOLL-like receptor 3; innate immunity, immune syst	7e-15
1ziw_A	680	TOLL-like receptor 3; innate immunity, immune syst	5e-10
1h6u_A	308	Internalin H; cell adhesion, leucine rich repeat,	2e-32
1h6u_A	308	Internalin H; cell adhesion, leucine rich repeat,	7e-24
1h6u_A	308	Internalin H; cell adhesion, leucine rich repeat,	1e-07
3t6q_A	606	CD180 antigen; protein-protein complex, leucine ri	1e-29
3t6q_A	606	CD180 antigen; protein-protein complex, leucine ri	3e-29
3t6q_A	606	CD180 antigen; protein-protein complex, leucine ri	9e-29
3t6q_A	606	CD180 antigen; protein-protein complex, leucine ri	1e-28
3t6q_A	606	CD180 antigen; protein-protein complex, leucine ri	4e-27
3t6q_A	606	CD180 antigen; protein-protein complex, leucine ri	2e-25
2id5_A	477	Lingo-1, leucine rich repeat neuronal 6A; CNS-spec	9e-29
2id5_A	477	Lingo-1, leucine rich repeat neuronal 6A; CNS-spec	2e-27
2id5_A	477	Lingo-1, leucine rich repeat neuronal 6A; CNS-spec	5e-24
2id5_A	477	Lingo-1, leucine rich repeat neuronal 6A; CNS-spec	5e-14
2id5_A	477	Lingo-1, leucine rich repeat neuronal 6A; CNS-spec	1e-11
2id5_A	477	Lingo-1, leucine rich repeat neuronal 6A; CNS-spec	2e-07
3j0a_A	844	TOLL-like receptor 5; membrane protein, leucine-ri	1e-28
3j0a_A	844	TOLL-like receptor 5; membrane protein, leucine-ri	1e-27
3j0a_A	844	TOLL-like receptor 5; membrane protein, leucine-ri	4e-27
3j0a_A	844	TOLL-like receptor 5; membrane protein, leucine-ri	9e-25
3j0a_A	844	TOLL-like receptor 5; membrane protein, leucine-ri	8e-15
3j0a_A	844	TOLL-like receptor 5; membrane protein, leucine-ri	1e-07
2ast_B	336	S-phase kinase-associated protein 2; SCF-substrate	3e-27
2ast_B	336	S-phase kinase-associated protein 2; SCF-substrate	4e-27
2ast_B	336	S-phase kinase-associated protein 2; SCF-substrate	7e-26
2ast_B	336	S-phase kinase-associated protein 2; SCF-substrate	3e-22
3vq2_A	606	TLR4, TOLL-like receptor 4; leucine rich repeat MD	3e-27
3vq2_A	606	TLR4, TOLL-like receptor 4; leucine rich repeat MD	6e-23
3vq2_A	606	TLR4, TOLL-like receptor 4; leucine rich repeat MD	8e-21
3vq2_A	606	TLR4, TOLL-like receptor 4; leucine rich repeat MD	3e-19
3vq2_A	606	TLR4, TOLL-like receptor 4; leucine rich repeat MD	9e-14
3vq2_A	606	TLR4, TOLL-like receptor 4; leucine rich repeat MD	1e-06
4ezg_A	197	Putative uncharacterized protein; internalin-A, le	4e-27
4ezg_A	197	Putative uncharacterized protein; internalin-A, le	8e-24
4ezg_A	197	Putative uncharacterized protein; internalin-A, le	3e-23
4ezg_A	197	Putative uncharacterized protein; internalin-A, le	5e-19
4ezg_A	197	Putative uncharacterized protein; internalin-A, le	9e-15
4ezg_A	197	Putative uncharacterized protein; internalin-A, le	7e-11
1h6t_A	291	Internalin B; cell adhesion, leucine rich repeat,	5e-27
1h6t_A	291	Internalin B; cell adhesion, leucine rich repeat,	5e-25
1h6t_A	291	Internalin B; cell adhesion, leucine rich repeat,	8e-23
1h6t_A	291	Internalin B; cell adhesion, leucine rich repeat,	4e-22
1h6t_A	291	Internalin B; cell adhesion, leucine rich repeat,	3e-17
1h6t_A	291	Internalin B; cell adhesion, leucine rich repeat,	1e-11
3fxi_A	605	TLR4, htoll, TOLL-like receptor 4; leucine rich re	2e-25
3fxi_A	605	TLR4, htoll, TOLL-like receptor 4; leucine rich re	6e-23
3fxi_A	605	TLR4, htoll, TOLL-like receptor 4; leucine rich re	4e-20
3fxi_A	605	TLR4, htoll, TOLL-like receptor 4; leucine rich re	1e-15
3fxi_A	605	TLR4, htoll, TOLL-like receptor 4; leucine rich re	4e-15
3fxi_A	605	TLR4, htoll, TOLL-like receptor 4; leucine rich re	2e-06
3goz_A	362	Leucine-rich repeat-containing protein; LEGL7, NES	6e-25
3goz_A	362	Leucine-rich repeat-containing protein; LEGL7, NES	2e-23
3goz_A	362	Leucine-rich repeat-containing protein; LEGL7, NES	2e-15
3goz_A	362	Leucine-rich repeat-containing protein; LEGL7, NES	7e-08
3goz_A	362	Leucine-rich repeat-containing protein; LEGL7, NES	2e-06
2z81_A	549	CD282 antigen, TOLL-like receptor 2, variable lymp	6e-24
2z81_A	549	CD282 antigen, TOLL-like receptor 2, variable lymp	3e-22
2z81_A	549	CD282 antigen, TOLL-like receptor 2, variable lymp	2e-20
2z81_A	549	CD282 antigen, TOLL-like receptor 2, variable lymp	8e-19
1xeu_A	263	Internalin C; cellular invasion, leucine-rich repe	1e-23
1xeu_A	263	Internalin C; cellular invasion, leucine-rich repe	1e-22
1xeu_A	263	Internalin C; cellular invasion, leucine-rich repe	5e-16
1xeu_A	263	Internalin C; cellular invasion, leucine-rich repe	7e-10
3un9_A	372	NLR family member X1; leucine rich repeat (LRR), a	2e-23
3un9_A	372	NLR family member X1; leucine rich repeat (LRR), a	4e-22
3un9_A	372	NLR family member X1; leucine rich repeat (LRR), a	3e-16
3un9_A	372	NLR family member X1; leucine rich repeat (LRR), a	5e-12
3un9_A	372	NLR family member X1; leucine rich repeat (LRR), a	2e-11
3un9_A	372	NLR family member X1; leucine rich repeat (LRR), a	2e-06
2z63_A	570	TOLL-like receptor 4, variable lymphocyte recepto;	8e-23
2z63_A	570	TOLL-like receptor 4, variable lymphocyte recepto;	1e-21
2z63_A	570	TOLL-like receptor 4, variable lymphocyte recepto;	3e-19
2z63_A	570	TOLL-like receptor 4, variable lymphocyte recepto;	8e-16
2z63_A	570	TOLL-like receptor 4, variable lymphocyte recepto;	1e-12
2z63_A	570	TOLL-like receptor 4, variable lymphocyte recepto;	1e-06
3o6n_A	390	APL1; leucine-rich repeat, protein binding; HET: N	3e-22
3o6n_A	390	APL1; leucine-rich repeat, protein binding; HET: N	3e-13
3o6n_A	390	APL1; leucine-rich repeat, protein binding; HET: N	4e-07
3oja_B	597	Anopheles plasmodium-responsive leucine-rich REPE	2e-21
3oja_B	597	Anopheles plasmodium-responsive leucine-rich REPE	4e-18
3oja_B	597	Anopheles plasmodium-responsive leucine-rich REPE	2e-12
3v47_A	455	TOLL-like receptor 5B and variable lymphocyte REC	4e-21
3v47_A	455	TOLL-like receptor 5B and variable lymphocyte REC	1e-15
3v47_A	455	TOLL-like receptor 5B and variable lymphocyte REC	6e-13
2ca6_A	386	RAN GTPase-activating protein 1; GAP, GTPase activ	6e-21
2ca6_A	386	RAN GTPase-activating protein 1; GAP, GTPase activ	2e-18
2ca6_A	386	RAN GTPase-activating protein 1; GAP, GTPase activ	8e-16
4ecn_A	876	Leucine-rich repeat protein; leucine-rich repeats,	1e-20
4ecn_A	876	Leucine-rich repeat protein; leucine-rich repeats,	1e-19
4ecn_A	876	Leucine-rich repeat protein; leucine-rich repeats,	4e-13
4ecn_A	876	Leucine-rich repeat protein; leucine-rich repeats,	5e-12
4ecn_A	876	Leucine-rich repeat protein; leucine-rich repeats,	3e-11
4ecn_A	876	Leucine-rich repeat protein; leucine-rich repeats,	2e-09
3bz5_A	457	Internalin-J, INLJ; leucine rich repeat (LRR), cys	2e-20
3bz5_A	457	Internalin-J, INLJ; leucine rich repeat (LRR), cys	2e-17
3bz5_A	457	Internalin-J, INLJ; leucine rich repeat (LRR), cys	7e-14
3bz5_A	457	Internalin-J, INLJ; leucine rich repeat (LRR), cys	4e-10
1xku_A	330	Decorin; proteoglycan, leucine-rich repeat, struct	7e-20
1xku_A	330	Decorin; proteoglycan, leucine-rich repeat, struct	5e-19
1xku_A	330	Decorin; proteoglycan, leucine-rich repeat, struct	2e-15
1xku_A	330	Decorin; proteoglycan, leucine-rich repeat, struct	2e-08
3oja_A	487	Leucine-rich immune molecule 1; coiled-coil, helix	2e-19
3oja_A	487	Leucine-rich immune molecule 1; coiled-coil, helix	1e-17
3oja_A	487	Leucine-rich immune molecule 1; coiled-coil, helix	1e-17
3oja_A	487	Leucine-rich immune molecule 1; coiled-coil, helix	4e-17
3oja_A	487	Leucine-rich immune molecule 1; coiled-coil, helix	3e-16
3oja_A	487	Leucine-rich immune molecule 1; coiled-coil, helix	3e-14
3zyj_A	440	Leucine-rich repeat-containing protein 4C; cell ad	2e-19
3zyj_A	440	Leucine-rich repeat-containing protein 4C; cell ad	4e-18
3zyj_A	440	Leucine-rich repeat-containing protein 4C; cell ad	1e-17
3zyj_A	440	Leucine-rich repeat-containing protein 4C; cell ad	2e-15
3zyj_A	440	Leucine-rich repeat-containing protein 4C; cell ad	3e-11
3zyj_A	440	Leucine-rich repeat-containing protein 4C; cell ad	3e-10
3zyj_A	440	Leucine-rich repeat-containing protein 4C; cell ad	1e-08
3o53_A	317	Protein LRIM1, AGAP006348-PA; leucine-rich repeat,	3e-19
3o53_A	317	Protein LRIM1, AGAP006348-PA; leucine-rich repeat,	6e-19
3o53_A	317	Protein LRIM1, AGAP006348-PA; leucine-rich repeat,	3e-18
3o53_A	317	Protein LRIM1, AGAP006348-PA; leucine-rich repeat,	3e-15
3o53_A	317	Protein LRIM1, AGAP006348-PA; leucine-rich repeat,	3e-04
3e4g_A	176	ATP synthase subunit S, mitochondrial; leucine-ric	4e-19
3e4g_A	176	ATP synthase subunit S, mitochondrial; leucine-ric	9e-16
3e4g_A	176	ATP synthase subunit S, mitochondrial; leucine-ric	5e-15
3e4g_A	176	ATP synthase subunit S, mitochondrial; leucine-ric	1e-14
3e4g_A	176	ATP synthase subunit S, mitochondrial; leucine-ric	2e-13
3e4g_A	176	ATP synthase subunit S, mitochondrial; leucine-ric	1e-12
3e4g_A	176	ATP synthase subunit S, mitochondrial; leucine-ric	3e-11
3e4g_A	176	ATP synthase subunit S, mitochondrial; leucine-ric	5e-07
3zyi_A	452	Leucine-rich repeat-containing protein 4; cell adh	1e-18
3zyi_A	452	Leucine-rich repeat-containing protein 4; cell adh	6e-18
3zyi_A	452	Leucine-rich repeat-containing protein 4; cell adh	3e-16
3zyi_A	452	Leucine-rich repeat-containing protein 4; cell adh	4e-16
3zyi_A	452	Leucine-rich repeat-containing protein 4; cell adh	3e-11
3zyi_A	452	Leucine-rich repeat-containing protein 4; cell adh	1e-08
2z66_A	306	Variable lymphocyte receptor B, TOLL-like recepto;	1e-17
2z66_A	306	Variable lymphocyte receptor B, TOLL-like recepto;	3e-17
2z66_A	306	Variable lymphocyte receptor B, TOLL-like recepto;	3e-17
2z66_A	306	Variable lymphocyte receptor B, TOLL-like recepto;	1e-15
2z66_A	306	Variable lymphocyte receptor B, TOLL-like recepto;	2e-12
2z66_A	306	Variable lymphocyte receptor B, TOLL-like recepto;	1e-10
2z66_A	306	Variable lymphocyte receptor B, TOLL-like recepto;	4e-04
2z80_A	353	TOLL-like receptor 2, variable lymphocyte recepto;	5e-17
2z80_A	353	TOLL-like receptor 2, variable lymphocyte recepto;	2e-14
3rgz_A	768	Protein brassinosteroid insensitive 1; phytohormon	8e-17
3rgz_A	768	Protein brassinosteroid insensitive 1; phytohormon	7e-15
3rgz_A	768	Protein brassinosteroid insensitive 1; phytohormon	1e-14
3rgz_A	768	Protein brassinosteroid insensitive 1; phytohormon	1e-11
3rgz_A	768	Protein brassinosteroid insensitive 1; phytohormon	3e-04
2ft3_A	332	Biglycan; proteoglycan, dimer interface, structura	9e-17
2ft3_A	332	Biglycan; proteoglycan, dimer interface, structura	3e-15
2ft3_A	332	Biglycan; proteoglycan, dimer interface, structura	1e-13
2ft3_A	332	Biglycan; proteoglycan, dimer interface, structura	3e-06
2z7x_B	520	TOLL-like receptor 1, variable lymphocyte recepto;	2e-16
2z7x_B	520	TOLL-like receptor 1, variable lymphocyte recepto;	2e-13
2z7x_B	520	TOLL-like receptor 1, variable lymphocyte recepto;	2e-12
2z7x_B	520	TOLL-like receptor 1, variable lymphocyte recepto;	4e-10
2z7x_B	520	TOLL-like receptor 1, variable lymphocyte recepto;	6e-05
4eco_A	636	Uncharacterized protein; leucine-rich repeats, pro	4e-16
4eco_A	636	Uncharacterized protein; leucine-rich repeats, pro	1e-15
4eco_A	636	Uncharacterized protein; leucine-rich repeats, pro	4e-13
2ra8_A	362	Uncharacterized protein Q64V53_bacfr; WGR domain,	1e-15
2ra8_A	362	Uncharacterized protein Q64V53_bacfr; WGR domain,	2e-11
2ra8_A	362	Uncharacterized protein Q64V53_bacfr; WGR domain,	2e-11
1ozn_A	285	Reticulon 4 receptor; NOGO receptor, MAD, myelinat	2e-14
1ozn_A	285	Reticulon 4 receptor; NOGO receptor, MAD, myelinat	8e-14
1ozn_A	285	Reticulon 4 receptor; NOGO receptor, MAD, myelinat	8e-14
1ozn_A	285	Reticulon 4 receptor; NOGO receptor, MAD, myelinat	4e-13
1ozn_A	285	Reticulon 4 receptor; NOGO receptor, MAD, myelinat	5e-11
1jl5_A	454	Outer protein YOPM; leucine-rich repeat, molecular	7e-13
1jl5_A	454	Outer protein YOPM; leucine-rich repeat, molecular	7e-08
4fcg_A	328	Uncharacterized protein; structural genomics, PSI-	2e-12
4fcg_A	328	Uncharacterized protein; structural genomics, PSI-	3e-05
4fcg_A	328	Uncharacterized protein; structural genomics, PSI-	4e-05
4fcg_A	328	Uncharacterized protein; structural genomics, PSI-	5e-05
2z62_A	276	TOLL-like receptor 4, variable lymphocyte recepto;	1e-11
2z62_A	276	TOLL-like receptor 4, variable lymphocyte recepto;	1e-10
2z62_A	276	TOLL-like receptor 4, variable lymphocyte recepto;	7e-08
2z62_A	276	TOLL-like receptor 4, variable lymphocyte recepto;	4e-05
2z62_A	276	TOLL-like receptor 4, variable lymphocyte recepto;	1e-04
3a79_B	562	TLR6, VLRB.59, TOLL-like receptor 6, variable lymp	3e-11
3a79_B	562	TLR6, VLRB.59, TOLL-like receptor 6, variable lymp	1e-10
1a9n_A	176	U2A', U2A'; complex (nuclear protein/RNA), RNA, sn	3e-11
1a9n_A	176	U2A', U2A'; complex (nuclear protein/RNA), RNA, sn	6e-07
1a9n_A	176	U2A', U2A'; complex (nuclear protein/RNA), RNA, sn	3e-06
1a9n_A	176	U2A', U2A'; complex (nuclear protein/RNA), RNA, sn	4e-06
1a9n_A	176	U2A', U2A'; complex (nuclear protein/RNA), RNA, sn	6e-04
3g06_A	622	SSPH2 (leucine-rich repeat protein); E3 ubiquitin	5e-11
3g06_A	622	SSPH2 (leucine-rich repeat protein); E3 ubiquitin	8e-10
3g06_A	622	SSPH2 (leucine-rich repeat protein); E3 ubiquitin	4e-06
1dce_A	567	Protein (RAB geranylgeranyltransferase alpha subun	2e-10
1dce_A	567	Protein (RAB geranylgeranyltransferase alpha subun	2e-09
1dce_A	567	Protein (RAB geranylgeranyltransferase alpha subun	9e-09
4ay9_X	350	Follicle-stimulating hormone receptor; hormone-rec	2e-10
4ay9_X	350	Follicle-stimulating hormone receptor; hormone-rec	4e-10
4ay9_X	350	Follicle-stimulating hormone receptor; hormone-rec	4e-10
4ay9_X	350	Follicle-stimulating hormone receptor; hormone-rec	2e-05
2je0_A	149	Acidic leucine-rich nuclear phosphoprotein 32 FAM	2e-09
2je0_A	149	Acidic leucine-rich nuclear phosphoprotein 32 FAM	3e-07
2je0_A	149	Acidic leucine-rich nuclear phosphoprotein 32 FAM	3e-07
2je0_A	149	Acidic leucine-rich nuclear phosphoprotein 32 FAM	2e-04
1io0_A	185	Tropomodulin; LRR protein, right-handed super-heli	5e-09
1io0_A	185	Tropomodulin; LRR protein, right-handed super-heli	7e-08
1io0_A	185	Tropomodulin; LRR protein, right-handed super-heli	8e-08
1io0_A	185	Tropomodulin; LRR protein, right-handed super-heli	6e-07
1io0_A	185	Tropomodulin; LRR protein, right-handed super-heli	1e-04
2ell_A	168	Acidic leucine-rich nuclear phosphoprotein 32 FAM	8e-09
2ell_A	168	Acidic leucine-rich nuclear phosphoprotein 32 FAM	8e-07
2ell_A	168	Acidic leucine-rich nuclear phosphoprotein 32 FAM	1e-06
2ell_A	168	Acidic leucine-rich nuclear phosphoprotein 32 FAM	4e-06
2ell_A	168	Acidic leucine-rich nuclear phosphoprotein 32 FAM	3e-05
2ell_A	168	Acidic leucine-rich nuclear phosphoprotein 32 FAM	2e-04
1ds9_A	198	Outer arm dynein; leucine-rich repeat, beta-BETA-a	1e-08
1ds9_A	198	Outer arm dynein; leucine-rich repeat, beta-BETA-a	7e-08
1ds9_A	198	Outer arm dynein; leucine-rich repeat, beta-BETA-a	1e-07
1ds9_A	198	Outer arm dynein; leucine-rich repeat, beta-BETA-a	8e-05
1wwl_A	312	Monocyte differentiation antigen CD14; LPS, immune	2e-08
1wwl_A	312	Monocyte differentiation antigen CD14; LPS, immune	1e-06
1wwl_A	312	Monocyte differentiation antigen CD14; LPS, immune	2e-06
1wwl_A	312	Monocyte differentiation antigen CD14; LPS, immune	5e-06
1wwl_A	312	Monocyte differentiation antigen CD14; LPS, immune	9e-05
2xot_A	361	Amphoterin-induced protein 1; cell adhesion, neuro	3e-08
2xot_A	361	Amphoterin-induced protein 1; cell adhesion, neuro	1e-07
2xot_A	361	Amphoterin-induced protein 1; cell adhesion, neuro	4e-07
1p9a_G	290	Platelet glycoprotein IB alpha chain precursor; pl	8e-08
1p9a_G	290	Platelet glycoprotein IB alpha chain precursor; pl	2e-06
1p9a_G	290	Platelet glycoprotein IB alpha chain precursor; pl	2e-05
1p9a_G	290	Platelet glycoprotein IB alpha chain precursor; pl	2e-04
1vt4_I	1221	APAF-1 related killer DARK; drosophila apoptosome,	9e-08
2o6q_A	270	Variable lymphocyte receptor A; leucine-rich repea	3e-07
2o6q_A	270	Variable lymphocyte receptor A; leucine-rich repea	5e-07
2o6q_A	270	Variable lymphocyte receptor A; leucine-rich repea	3e-06
2o6q_A	270	Variable lymphocyte receptor A; leucine-rich repea	3e-05
2o6q_A	270	Variable lymphocyte receptor A; leucine-rich repea	9e-05
2o6q_A	270	Variable lymphocyte receptor A; leucine-rich repea	6e-04
2v70_A	220	SLIT-2, SLIT homolog 2 protein N-product; neurogen	8e-07
2v70_A	220	SLIT-2, SLIT homolog 2 protein N-product; neurogen	2e-04
3cvr_A	571	Invasion plasmid antigen; leucine rich repeat and	1e-06
3cvr_A	571	Invasion plasmid antigen; leucine rich repeat and	1e-05
3cvr_A	571	Invasion plasmid antigen; leucine rich repeat and	5e-05
2xwt_C	239	Thyrotropin receptor; signaling protein-immune sys	3e-06
2xwt_C	239	Thyrotropin receptor; signaling protein-immune sys	2e-05
2xwt_C	239	Thyrotropin receptor; signaling protein-immune sys	5e-05
3m19_A	251	Variable lymphocyte receptor A diversity region; a	2e-05
1ogq_A	313	PGIP-2, polygalacturonase inhibiting protein; inhi	3e-05
2ifg_A	347	High affinity nerve growth factor receptor; TRK, T	1e-04
2ifg_A	347	High affinity nerve growth factor receptor; TRK, T	1e-04
2ifg_A	347	High affinity nerve growth factor receptor; TRK, T	3e-04
2v9t_B	220	SLIT homolog 2 protein N-product; structural prote	2e-04
1pgv_A	197	TMD-1, tropomodulin TMD-1; structural genomics, PS	6e-04
3jqh_A	167	C-type lectin domain family 4 member M; DC-signr,	7e-04

>3ogk_B Coronatine-insensitive protein 1; leucine rich repeat, ubiquitin ligase, SCF, protein binding; HET: OGK; 2.80A {Arabidopsis thaliana} PDB: 3ogl_B* 3ogm_B* Length = 592

 Score =  173 bits (441), Expect = 3e-48
 Identities = 94/503 (18%), Positives = 172/503 (34%), Gaps = 71/503 (14%)

Query: 10  IFNELVYSRC--LTEVSLEAFRDCALQDLCLGQYPGVNDKWMDVIASQGSSLLSVDLSGS 67
              + +  R   L  + L+     A+ +L    + G    W+  I++    L SV     
Sbjct: 63  ATPDRLSRRFPNLRSLKLKGKPRAAMFNLIPENWGGYVTPWVTEISNNLRQLKSVHFRRM 122

Query: 68  DVTDSGLIHL--KDCSNLQSLDFNFCIQISDGGLEHLRGLSNLTSLSFRRNNAITAQGMK 125
            V+D  L  L      +L++L  + C   +  GL  +                       
Sbjct: 123 IVSDLDLDRLAKARADDLETLKLDKCSGFTTDGLLSI----------------------- 159

Query: 126 AFAGLINLVKLDLERCTRIHGGLVNL----KGLMKLESLNIKWCNC--ITDSDMKPL-SG 178
                  +  L +E  +        L    +    LE LN        I+  D++ +   
Sbjct: 160 -VTHCRKIKTLLMEESSFSEKDGKWLHELAQHNTSLEVLNFYMTEFAKISPKDLETIARN 218

Query: 179 LTNLKSLQIS-CSKVTDSGI-AYLKGLQKLTLLNLEGCPVTAACLDSLSALGSLFYLNLN 236
             +L S+++     +   G       L++    +L           +L     L  L L+
Sbjct: 219 CRSLVSVKVGDFEILELVGFFKAAANLEEFCGGSLNEDIGMPEKYMNLVFPRKLCRLGLS 278

Query: 237 RCQLSDDGCEKFSKIG-SLKVLNLGFNE-ITDECLVHLKGLTNLESLNLDSCGIGDEGLV 294
                 +           ++ L+L +    T++    ++   NLE L   +  IGD GL 
Sbjct: 279 YM--GPNEMPILFPFAAQIRKLDLLYALLETEDHCTLIQKCPNLEVLETRNV-IGDRGLE 335

Query: 295 NLTGLC-NLKCLELS-----------DTQVGSSGLRHLS-GLTNLESINLSFTGISDGSL 341
            L   C  LK L +            +  V   GL  L+ G   LE + +  + I++ SL
Sbjct: 336 VLAQYCKQLKRLRIERGADEQGMEDEEGLVSQRGLIALAQGCQELEYMAVYVSDITNESL 395

Query: 342 RKLA-GLSSLKSLNL----DARQITDTGL-----AALTSLTGLTHLDLFG--ARITDSGA 389
             +   L +L    L       +ITD  L     + L     L     +     +TD G 
Sbjct: 396 ESIGTYLKNLCDFRLVLLDREERITDLPLDNGVRSLLIGCKKLRRFAFYLRQGGLTDLGL 455

Query: 390 AYL-RNFKNLRSLEICGGGLTDAGVKHI-KDLSSLTLLNLSQNCNLTDKTLE-LISGLTG 446
           +Y+ +   N+R + +   G +D G+    +   +L  L +   C  +++ +   ++ L  
Sbjct: 456 SYIGQYSPNVRWMLLGYVGESDEGLMEFSRGCPNLQKLEMR-GCCFSERAIAAAVTKLPS 514

Query: 447 LVSLNVSNSRITSAGLRHLNHAR 469
           L  L V   R +  G   +  AR
Sbjct: 515 LRYLWVQGYRASMTGQDLMQMAR 537

>3ogk_B Coronatine-insensitive protein 1; leucine rich repeat, ubiquitin ligase, SCF, protein binding; HET: OGK; 2.80A {Arabidopsis thaliana} PDB: 3ogl_B* 3ogm_B* Length = 592

 Score =  141 bits (356), Expect = 1e-36
 Identities = 74/425 (17%), Positives = 147/425 (34%), Gaps = 44/425 (10%)

Query: 33  LQDLCLGQYPGVNDKWMDVIASQGSSLLSVDLSGSDVTDSGLIHL----KDCSNLQSLDF 88
           L+ L L +  G     +  I +    + ++ +  S  ++     L    +  ++L+ L+F
Sbjct: 140 LETLKLDKCSGFTTDGLLSIVTHCRKIKTLLMEESSFSEKDGKWLHELAQHNTSLEVLNF 199

Query: 89  NF--CIQISDGGLEHL-RGLSNLTSLSFRRNNAITAQGMKAFAGLINLVKLDLERCTRIH 145
                 +IS   LE + R   +L S+       +   G   F    NL +          
Sbjct: 200 YMTEFAKISPKDLETIARNCRSLVSVKVGDFEILELVGF--FKAAANLEEFCGGSLNEDI 257

Query: 146 GGLVNLKGLMKLESLNIKWCNCITDSDMKPL-SGLTNLKSLQIS-CSKVTDSGIAYLKGL 203
           G       L+    L     + +  ++M  L      ++ L +      T+     ++  
Sbjct: 258 GMPEKYMNLVFPRKLCRLGLSYMGPNEMPILFPFAAQIRKLDLLYALLETEDHCTLIQKC 317

Query: 204 QKLTLLNLEGCPVTAACLDSLSALGS-LFYLNLNRCQLSDDGCEKFSKIG---------- 252
             L +L      +    L+ L+     L  L + R        ++   +           
Sbjct: 318 PNLEVLETRNV-IGDRGLEVLAQYCKQLKRLRIERGADEQGMEDEEGLVSQRGLIALAQG 376

Query: 253 --SLKVLNLGFNEITDECLVHL----KGLTNLESLNLDSC-GIGDEGLVN-----LTGLC 300
              L+ + +  ++IT+E L  +    K L +   + LD    I D  L N     L G  
Sbjct: 377 CQELEYMAVYVSDITNESLESIGTYLKNLCDFRLVLLDREERITDLPLDNGVRSLLIGCK 436

Query: 301 NLKCLELSD--TQVGSSGLRHL-SGLTNLESINLSFTGISDGSLRKLA-GLSSLKSLNLD 356
            L+          +   GL ++     N+  + L + G SD  L + + G  +L+ L + 
Sbjct: 437 KLRRFAFYLRQGGLTDLGLSYIGQYSPNVRWMLLGYVGESDEGLMEFSRGCPNLQKLEMR 496

Query: 357 ARQITDTGLAAL-TSLTGLTHLDLFGARITDSGAAYL---RNFKNLRSLEICG-GGLTDA 411
               ++  +AA  T L  L +L + G R + +G   +   R + N+  +       +   
Sbjct: 497 GCCFSERAIAAAVTKLPSLRYLWVQGYRASMTGQDLMQMARPYWNIELIPSRRVPEVNQQ 556

Query: 412 GVKHI 416
           G    
Sbjct: 557 GEIRE 561

>3ogk_B Coronatine-insensitive protein 1; leucine rich repeat, ubiquitin ligase, SCF, protein binding; HET: OGK; 2.80A {Arabidopsis thaliana} PDB: 3ogl_B* 3ogm_B* Length = 592

 Score =  121 bits (305), Expect = 7e-30
 Identities = 59/347 (17%), Positives = 121/347 (34%), Gaps = 41/347 (11%)

Query: 23  VSLEAFRDCA--LQDLCLGQYPGVNDKWMDVIASQGSSLLSVDLSGSDVTDSGLIHL-KD 79
           + L  F   A  L++ C G     +    +   +         L  S +  + +  L   
Sbjct: 233 LELVGFFKAAANLEEFCGGSLNE-DIGMPEKYMNLVFPRKLCRLGLSYMGPNEMPILFPF 291

Query: 80  CSNLQSLDFNFCIQISDGGLEHLRGLSNLTSLSFRRNNAITAQGMKAFA-GLINLVKLDL 138
            + ++ LD  + +  ++     ++   NL  L  R  N I  +G++  A     L +L +
Sbjct: 292 AAQIRKLDLLYALLETEDHCTLIQKCPNLEVLETR--NVIGDRGLEVLAQYCKQLKRLRI 349

Query: 139 ERCTRIHGGLVNLKGLMKLESLNIKWCNCITDSDMKPLS-GLTNLKSLQISCSKVTDSGI 197
           ER     G                     ++   +  L+ G   L+ + +  S +T+  +
Sbjct: 350 ERGADEQGMEDE--------------EGLVSQRGLIALAQGCQELEYMAVYVSDITNESL 395

Query: 198 AYL----KGLQKLTLLNLEGCP-VTAACLDS-----LSALGSLFYLNLNRC--QLSDDGC 245
             +    K L    L+ L+    +T   LD+     L     L           L+D G 
Sbjct: 396 ESIGTYLKNLCDFRLVLLDREERITDLPLDNGVRSLLIGCKKLRRFAFYLRQGGLTDLGL 455

Query: 246 EKFSKIG-SLKVLNLGFNEITDECLVHL-KGLTNLESLNLDSCGIGDEGLVNL-TGLCNL 302
               +   +++ + LG+   +DE L+   +G  NL+ L +  C   +  +    T L +L
Sbjct: 456 SYIGQYSPNVRWMLLGYVGESDEGLMEFSRGCPNLQKLEMRGCCFSERAIAAAVTKLPSL 515

Query: 303 KCLELSDTQVGSSGLRHLS---GLTNLESINLSF-TGISDGSLRKLA 345
           + L +   +   +G   +       N+E I       ++     +  
Sbjct: 516 RYLWVQGYRASMTGQDLMQMARPYWNIELIPSRRVPEVNQQGEIREM 562

>3ogk_B Coronatine-insensitive protein 1; leucine rich repeat, ubiquitin ligase, SCF, protein binding; HET: OGK; 2.80A {Arabidopsis thaliana} PDB: 3ogl_B* 3ogm_B* Length = 592

 Score =  111 bits (278), Expect = 2e-26
 Identities = 75/420 (17%), Positives = 141/420 (33%), Gaps = 59/420 (14%)

Query: 101 HLRGLSNLTSLSFRRNNAITAQGMKAFAGLINLVKLDLERCTRI---------------H 145
               + + T          TA   +      NL  L L+   R                 
Sbjct: 43  RWFKIDSETREHVTMALCYTATPDRLSRRFPNLRSLKLKGKPRAAMFNLIPENWGGYVTP 102

Query: 146 GGLVNLKGLMKLESLNIKWCNCITDSDMKPL--SGLTNLKSLQIS-CSKVTDSGIAYL-K 201
                   L +L+S++ +    ++D D+  L  +   +L++L++  CS  T  G+  +  
Sbjct: 103 WVTEISNNLRQLKSVHFRRMI-VSDLDLDRLAKARADDLETLKLDKCSGFTTDGLLSIVT 161

Query: 202 GLQKLTLLNLEGCPVTAACLDSLSALG----SLFYLNLNRC---QLSDDGCEKFSKIG-S 253
             +K+  L +E    +      L  L     SL  LN       ++S    E  ++   S
Sbjct: 162 HCRKIKTLLMEESSFSEKDGKWLHELAQHNTSLEVLNFYMTEFAKISPKDLETIARNCRS 221

Query: 254 LKVLNLGFNEITDE--CLVHLKGLTNLESLNLDSCGIGDEGLVNLTGLCNLKCLELSDTQ 311
           L  + +G  EI +          L      +L+      E  +NL     L  L LS   
Sbjct: 222 LVSVKVGDFEILELVGFFKAAANLEEFCGGSLNEDIGMPEKYMNLVFPRKLCRLGLSY-- 279

Query: 312 VGSSGLRHL-SGLTNLESINLSF-TGISDGSLRKLAGLSSLKSLNLDARQITDTGLAALT 369
           +G + +  L      +  ++L +    ++     +    +L+ L      I D GL  L 
Sbjct: 280 MGPNEMPILFPFAAQIRKLDLLYALLETEDHCTLIQKCPNLEVLETR-NVIGDRGLEVLA 338

Query: 370 SL-TGLTHLDLFG-----------ARITDSGAAYL-RNFKNLRSLEICGGGLTDAGVKHI 416
                L  L +               ++  G   L +  + L  + +    +T+  ++ I
Sbjct: 339 QYCKQLKRLRIERGADEQGMEDEEGLVSQRGLIALAQGCQELEYMAVYVSDITNESLESI 398

Query: 417 ----KDLSSLTLLNLSQNCNLTDKTLE-----LISGLTGLVSLNVSN--SRITSAGLRHL 465
               K+L    L+ L +   +TD  L+     L+ G   L           +T  GL ++
Sbjct: 399 GTYLKNLCDFRLVLLDREERITDLPLDNGVRSLLIGCKKLRRFAFYLRQGGLTDLGLSYI 458

>3ogk_B Coronatine-insensitive protein 1; leucine rich repeat, ubiquitin ligase, SCF, protein binding; HET: OGK; 2.80A {Arabidopsis thaliana} PDB: 3ogl_B* 3ogm_B* Length = 592

 Score =  103 bits (257), Expect = 1e-23
 Identities = 61/360 (16%), Positives = 123/360 (34%), Gaps = 49/360 (13%)

Query: 152 KGLMKLESLNIKW---CNCITDSDMKPLSGLTNLKSLQIS--------------CSKVTD 194
           +   K++S   +      C T +  +      NL+SL++                     
Sbjct: 42  RRWFKIDSETREHVTMALCYTATPDRLSRRFPNLRSLKLKGKPRAAMFNLIPENWGGYVT 101

Query: 195 SGIAYL-KGLQKLTLLNLEGCPVTAACLDSLSALG--SLFYLNLNRC-QLSDDGCEKFSK 250
             +  +   L++L  ++     V+   LD L+      L  L L++C   + DG      
Sbjct: 102 PWVTEISNNLRQLKSVHFRRMIVSDLDLDRLAKARADDLETLKLDKCSGFTTDGLLSIVT 161

Query: 251 I-GSLKVLNLGFNEITDECLVHL----KGLTNLESLNLDSCG---IGDEGLVNLTGLC-N 301
               +K L +  +  +++    L    +  T+LE LN        I  + L  +   C +
Sbjct: 162 HCRKIKTLLMEESSFSEKDGKWLHELAQHNTSLEVLNFYMTEFAKISPKDLETIARNCRS 221

Query: 302 LKCLELSDTQVGS--SGLRHLSGLTNLESINLSFTGISDGSLRKLAGLSSLKSLNLDARQ 359
           L  +++ D ++       +  + L      +L+           L     L  L L    
Sbjct: 222 LVSVKVGDFEILELVGFFKAAANLEEFCGGSLNEDIGMPEKYMNLVFPRKLCRLGL--SY 279

Query: 360 ITDTGLAALTSL-TGLTHLDLFGAR-ITDSGAAYLRNFKNLRSLEICGGGLTDAGVKHI- 416
           +    +  L      +  LDL  A   T+     ++   NL  LE     + D G++ + 
Sbjct: 280 MGPNEMPILFPFAAQIRKLDLLYALLETEDHCTLIQKCPNLEVLETR-NVIGDRGLEVLA 338

Query: 417 KDLSSLTLLNLSQNCN----------LTDKTLELIS-GLTGLVSLNVSNSRITSAGLRHL 465
           +    L  L + +  +          ++ + L  ++ G   L  + V  S IT+  L  +
Sbjct: 339 QYCKQLKRLRIERGADEQGMEDEEGLVSQRGLIALAQGCQELEYMAVYVSDITNESLESI 398

>3ogk_B Coronatine-insensitive protein 1; leucine rich repeat, ubiquitin ligase, SCF, protein binding; HET: OGK; 2.80A {Arabidopsis thaliana} PDB: 3ogl_B* 3ogm_B* Length = 592

 Score = 73.1 bits (179), Expect = 7e-14
 Identities = 35/227 (15%), Positives = 81/227 (35%), Gaps = 29/227 (12%)

Query: 17  SRCLTEVSLEAF------------RDCALQDLCLGQYPGVNDKWMDVIASQGSSLLSVDL 64
              + +  LE                 A +     +   V+ + +  +A     L  + +
Sbjct: 326 RNVIGDRGLEVLAQYCKQLKRLRIERGADEQGMEDEEGLVSQRGLIALAQGCQELEYMAV 385

Query: 65  SGSDVTDSGLIHL----KDCSNLQSLDFNFCIQISDGGLEH-----LRGLSNLTSLSFRR 115
             SD+T+  L  +    K+  + + +  +   +I+D  L++     L G   L   +F  
Sbjct: 386 YVSDITNESLESIGTYLKNLCDFRLVLLDREERITDLPLDNGVRSLLIGCKKLRRFAFYL 445

Query: 116 N-NAITAQGMKAFA-GLINLVKLDLERCTRIHGGLVNL-KGLMKLESLNIKWCNCITDSD 172
               +T  G+        N+  + L        GL+   +G   L+ L ++ C C ++  
Sbjct: 446 RQGGLTDLGLSYIGQYSPNVRWMLLGYVGESDEGLMEFSRGCPNLQKLEMRGC-CFSERA 504

Query: 173 MKPL-SGLTNLKSLQISCSKVTDSGIAYL---KGLQKLTLLNLEGCP 215
           +    + L +L+ L +   + + +G   +   +    + L+     P
Sbjct: 505 IAAAVTKLPSLRYLWVQGYRASMTGQDLMQMARPYWNIELIPSRRVP 551

>2p1m_B Transport inhibitor response 1 protein; F-BOX, leucine rich repeat, signaling protein; HET: IHP; 1.80A {Arabidopsis thaliana} PDB: 2p1n_B* 2p1o_B* 2p1p_B* 2p1q_B* 3c6n_B* 3c6o_B* 3c6p_B* Length = 594

 Score =  171 bits (434), Expect = 3e-47
 Identities = 97/492 (19%), Positives = 173/492 (35%), Gaps = 82/492 (16%)

Query: 10  IFNELVYSRC--LTEVSLEAFRDCALQDLCLGQYPGVNDKWMDVIASQGSSLLSVDLSGS 67
           +    V  R   +  V L+     A  +L    + G    W++ ++S  + L  + L   
Sbjct: 56  VSPATVIRRFPKVRSVELKGKPHFADFNLVPDGWGGYVYPWIEAMSSSYTWLEEIRLKRM 115

Query: 68  DVTDSGLIHL-KDCSNLQSLDFNFCIQISDGGLEHLRGLSNLTSLSFRRNNAITAQGMKA 126
            VTD  L  + K   N + L  + C   S  GL  +                        
Sbjct: 116 VVTDDCLELIAKSFKNFKVLVLSSCEGFSTDGLAAI------------------------ 151

Query: 127 FAGLINLVKLDLERCTRIHGGLVNL----KGLMKLESLNIKWCNC-ITDSDMKPL-SGLT 180
            A   NL +LDL            L         L SLNI      ++ S ++ L +   
Sbjct: 152 AATCRNLKELDLRESDVDDVSGHWLSHFPDTYTSLVSLNISCLASEVSFSALERLVTRCP 211

Query: 181 NLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACLDSLSALGSLFYLNLNRCQL 240
           NLKSL+++ +   +     L+   +L  L   G        +    + S   + L+ C+ 
Sbjct: 212 NLKSLKLNRAVPLEKLATLLQRAPQLEELGTGGY-----TAEVRPDVYSGLSVALSGCK- 265

Query: 241 SDDGCEKFSKIGSLKVLNLGFNEITDECLVHL-KGLTNLESLNLDSCGIGDEGLVNLTGL 299
                        L+ L+ GF +     L  +    + L +LNL    +    LV L   
Sbjct: 266 ------------ELRCLS-GFWDAVPAYLPAVYSVCSRLTTLNLSYATVQSYDLVKLLCQ 312

Query: 300 C-NLKCLELSDTQVGSSGLRHL-SGLTNLESINLS---------FTGISDGSLRKLA-GL 347
           C  L+ L + D  +  +GL  L S   +L  + +             +++  L  ++ G 
Sbjct: 313 CPKLQRLWVLD-YIEDAGLEVLASTCKDLRELRVFPSEPFVMEPNVALTEQGLVSVSMGC 371

Query: 348 SSLKSLNLDARQITDTGLAAL-TSLTGLTHLDLFG----------ARITDSGAAYL-RNF 395
             L+S+    RQ+T+  L  +  +   +T   L                D G   +  + 
Sbjct: 372 PKLESVLYFCRQMTNAALITIARNRPNMTRFRLCIIEPKAPDYLTLEPLDIGFGAIVEHC 431

Query: 396 KNLRSLEICGGGLTDAGVKHI-KDLSSLTLLNLSQNCNLTDKTLE-LISGLTGLVSLNVS 453
           K+LR L +  G LTD   ++I      + +L+++     +D  +  ++SG   L  L + 
Sbjct: 432 KDLRRLSLS-GLLTDKVFEYIGTYAKKMEMLSVA-FAGDSDLGMHHVLSGCDSLRKLEIR 489

Query: 454 NSRITSAGLRHL 465
           +       L   
Sbjct: 490 DCPFGDKALLAN 501

>2p1m_B Transport inhibitor response 1 protein; F-BOX, leucine rich repeat, signaling protein; HET: IHP; 1.80A {Arabidopsis thaliana} PDB: 2p1n_B* 2p1o_B* 2p1p_B* 2p1q_B* 3c6n_B* 3c6o_B* 3c6p_B* Length = 594

 Score =  136 bits (344), Expect = 5e-35
 Identities = 82/434 (18%), Positives = 143/434 (32%), Gaps = 46/434 (10%)

Query: 19  CLTEVSLEAFRDC--ALQDLCLGQYPGVNDKWMDVIASQGSSLLSVDLSGSDVTDSGLIH 76
            +T+  LE         + L L    G +   +  IA+   +L  +DL  SDV D     
Sbjct: 116 VVTDDCLELIAKSFKNFKVLVLSSCEGFSTDGLAAIAATCRNLKELDLRESDVDDVSGHW 175

Query: 77  LKD----CSNLQSLDFNFC-IQISDGGLEHL-RGLSNLTSLSFRRNNAITAQGMKAFAGL 130
           L       ++L SL+ +    ++S   LE L     NL SL   R   +           
Sbjct: 176 LSHFPDTYTSLVSLNISCLASEVSFSALERLVTRCPNLKSLKLNRAVPLEK-LATLLQRA 234

Query: 131 INLVKLDLERCTRI------HGGLVNLKGLMKLESLNIKWCNCITDSDMKPL-SGLTNLK 183
             L +L     T         G  V L G  +L  L+         + +  + S  + L 
Sbjct: 235 PQLEELGTGGYTAEVRPDVYSGLSVALSGCKELRCLSG--FWDAVPAYLPAVYSVCSRLT 292

Query: 184 SLQISCSKVTDSGIAYL-KGLQKLTLLNLEGCPVTAACLDSLSALGSLFYLNLNRC-QLS 241
           +L +S + V    +  L     KL  L +      A      S    L  L +       
Sbjct: 293 TLNLSYATVQSYDLVKLLCQCPKLQRLWVLDYIEDAGLEVLASTCKDLRELRVFPSEPFV 352

Query: 242 DDGCEKFSKIG---------SLKVLNLGFNEITDECLVHL-KGLTNLESLNLDSC----- 286
            +     ++ G          L+ +     ++T+  L+ + +   N+    L        
Sbjct: 353 MEPNVALTEQGLVSVSMGCPKLESVLYFCRQMTNAALITIARNRPNMTRFRLCIIEPKAP 412

Query: 287 -----GIGDEGLVNLTGLC-NLKCLELSDTQVGSSGLRHLS-GLTNLESINLSFTGISDG 339
                   D G   +   C +L+ L LS   +      ++      +E ++++F G SD 
Sbjct: 413 DYLTLEPLDIGFGAIVEHCKDLRRLSLSG-LLTDKVFEYIGTYAKKMEMLSVAFAGDSDL 471

Query: 340 SLRKLA-GLSSLKSLNL-DARQITDTGLAALTSLTGLTHLDLFGARITDSGAAYL-RNFK 396
            +  +  G  SL+ L + D        LA  + L  +  L +    ++      L +   
Sbjct: 472 GMHHVLSGCDSLRKLEIRDCPFGDKALLANASKLETMRSLWMSSCSVSFGACKLLGQKMP 531

Query: 397 NLRSLEICGGGLTD 410
            L    I   G  D
Sbjct: 532 KLNVEVIDERGAPD 545

>2p1m_B Transport inhibitor response 1 protein; F-BOX, leucine rich repeat, signaling protein; HET: IHP; 1.80A {Arabidopsis thaliana} PDB: 2p1n_B* 2p1o_B* 2p1p_B* 2p1q_B* 3c6n_B* 3c6o_B* 3c6p_B* Length = 594

 Score =  119 bits (300), Expect = 4e-29
 Identities = 79/441 (17%), Positives = 134/441 (30%), Gaps = 84/441 (19%)

Query: 105 LSNLTSLSFRRNNAITAQGMKAFAGLINLVKLDLERCTRI---------------HGGLV 149
           +           N               +  ++L+                         
Sbjct: 40  IERWCRRKVFIGNCYAVSPATVIRRFPKVRSVELKGKPHFADFNLVPDGWGGYVYPWIEA 99

Query: 150 NLKGLMKLESLNIKWCNCITDSDMKPLS-GLTNLKSLQIS-CSKVTDSGIAYL-KGLQKL 206
                  LE + +K    +TD  ++ ++    N K L +S C   +  G+A +    + L
Sbjct: 100 MSSSYTWLEEIRLKRM-VVTDDCLELIAKSFKNFKVLVLSSCEGFSTDGLAAIAATCRNL 158

Query: 207 TLLNLEGCPVTAACLDSLSALG----SLFYLNLNRC--QLSDDGCEKFSK-IGSLKVLNL 259
             L+L    V       LS       SL  LN++    ++S    E+      +LK L L
Sbjct: 159 KELDLRESDVDDVSGHWLSHFPDTYTSLVSLNISCLASEVSFSALERLVTRCPNLKSLKL 218

Query: 260 GFNEITDECLVHLKGLTNLESLNLDSC-----------------------------GIGD 290
                 ++    L+    LE L                                      
Sbjct: 219 NRAVPLEKLATLLQRAPQLEELGTGGYTAEVRPDVYSGLSVALSGCKELRCLSGFWDAVP 278

Query: 291 EGLVNLTGLC-NLKCLELSDTQVGSSGLRHL-SGLTNLESINLSFTGISDGSLRKLA-GL 347
             L  +  +C  L  L LS   V S  L  L      L+ + +    I D  L  LA   
Sbjct: 279 AYLPAVYSVCSRLTTLNLSYATVQSYDLVKLLCQCPKLQRLWV-LDYIEDAGLEVLASTC 337

Query: 348 SSLKSLNLDA---------RQITDTGLAAL-TSLTGLTHLDLFGARITDSGAAYL-RNFK 396
             L+ L +             +T+ GL ++      L  +  F  ++T++    + RN  
Sbjct: 338 KDLRELRVFPSEPFVMEPNVALTEQGLVSVSMGCPKLESVLYFCRQMTNAALITIARNRP 397

Query: 397 NLRSLEICG----------GGLTDAGVKHI-KDLSSLTLLNLSQNCNLTDKTLELIS-GL 444
           N+    +C               D G   I +    L  L+LS    LTDK  E I    
Sbjct: 398 NMTRFRLCIIEPKAPDYLTLEPLDIGFGAIVEHCKDLRRLSLS--GLLTDKVFEYIGTYA 455

Query: 445 TGLVSLNVSNSRITSAGLRHL 465
             +  L+V+ +  +  G+ H+
Sbjct: 456 KKMEMLSVAFAGDSDLGMHHV 476

>2p1m_B Transport inhibitor response 1 protein; F-BOX, leucine rich repeat, signaling protein; HET: IHP; 1.80A {Arabidopsis thaliana} PDB: 2p1n_B* 2p1o_B* 2p1p_B* 2p1q_B* 3c6n_B* 3c6o_B* 3c6p_B* Length = 594

 Score =  101 bits (253), Expect = 3e-23
 Identities = 62/330 (18%), Positives = 116/330 (35%), Gaps = 37/330 (11%)

Query: 13  ELVYSRCLTEVSLEAF--RDCALQDLCLGQYPGVNDKWMDVIASQGSSLLS--VDLSG-S 67
            L  +R +    L     R   L++L  G Y       +    S   S       LSG  
Sbjct: 215 SLKLNRAVPLEKLATLLQRAPQLEELGTGGYTAEVRPDVYSGLSVALSGCKELRCLSGFW 274

Query: 68  DVTDSGLIHL-KDCSNLQSLDFNFCIQISDGGLEHLRGLSNLTSLSFRRNNAITAQGMKA 126
           D   + L  +   CS L +L+ ++    S   ++ L     L  L       I   G++ 
Sbjct: 275 DAVPAYLPAVYSVCSRLTTLNLSYATVQSYDLVKLLCQCPKLQRLWVLDY--IEDAGLEV 332

Query: 127 FA-GLINLVKLDLERCTRIHG---------GLVNL-KGLMKLESLNIKWCNCITDSDMKP 175
            A    +L +L +                 GLV++  G  KLES+ + +C  +T++ +  
Sbjct: 333 LASTCKDLRELRVFPSEPFVMEPNVALTEQGLVSVSMGCPKLESV-LYFCRQMTNAALIT 391

Query: 176 LS-GLTNLKSLQIS----------CSKVTDSGIAYL-KGLQKLTLLNLEGCPVTAACLDS 223
           ++    N+   ++             +  D G   + +  + L  L+L G  +T    + 
Sbjct: 392 IARNRPNMTRFRLCIIEPKAPDYLTLEPLDIGFGAIVEHCKDLRRLSLSGL-LTDKVFEY 450

Query: 224 LSALG-SLFYLNLNRCQLSDDGCEKFSKI-GSLKVLNLGFNEITDECLV-HLKGLTNLES 280
           +      +  L++     SD G         SL+ L +      D+ L+ +   L  + S
Sbjct: 451 IGTYAKKMEMLSVAFAGDSDLGMHHVLSGCDSLRKLEIRDCPFGDKALLANASKLETMRS 510

Query: 281 LNLDSCGIGDEGLVNL-TGLCNLKCLELSD 309
           L + SC +       L   +  L    + +
Sbjct: 511 LWMSSCSVSFGACKLLGQKMPKLNVEVIDE 540

>2p1m_B Transport inhibitor response 1 protein; F-BOX, leucine rich repeat, signaling protein; HET: IHP; 1.80A {Arabidopsis thaliana} PDB: 2p1n_B* 2p1o_B* 2p1p_B* 2p1q_B* 3c6n_B* 3c6o_B* 3c6p_B* Length = 594

 Score = 69.9 bits (171), Expect = 6e-13
 Identities = 34/241 (14%), Positives = 78/241 (32%), Gaps = 28/241 (11%)

Query: 13  ELVYSRCLTEVSLEAFRDC--ALQDLCLGQY--------PGVNDKWMDVIASQGSSLLSV 62
            L     + +  LE        L++L +             + ++ +  ++     L SV
Sbjct: 318 RLWVLDYIEDAGLEVLASTCKDLRELRVFPSEPFVMEPNVALTEQGLVSVSMGCPKLESV 377

Query: 63  DLSGSDVTDSGLIHL-KDCSNLQSLD---------FNFCIQISDGGLEHL-RGLSNLTSL 111
                 +T++ LI + ++  N+                 ++  D G   +     +L  L
Sbjct: 378 LYFCRQMTNAALITIARNRPNMTRFRLCIIEPKAPDYLTLEPLDIGFGAIVEHCKDLRRL 437

Query: 112 SFRRNNAITAQGMKAFA-GLINLVKLDLERCTRIHGGLVNL-KGLMKLESLNIKWCNCIT 169
           S      +T +  +        +  L +        G+ ++  G   L  L I+ C    
Sbjct: 438 SLS--GLLTDKVFEYIGTYAKKMEMLSVAFAGDSDLGMHHVLSGCDSLRKLEIRDCPFGD 495

Query: 170 DSDMKPLSGLTNLKSLQISCSKVTDSGIAYLK---GLQKLTLLNLEGCPVTAACLDSLSA 226
            + +   S L  ++SL +S   V+      L        + +++  G P +      +  
Sbjct: 496 KALLANASKLETMRSLWMSSCSVSFGACKLLGQKMPKLNVEVIDERGAPDSRPESCPVER 555

Query: 227 L 227
           +
Sbjct: 556 V 556

>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A Length = 466

 Score =  163 bits (415), Expect = 2e-45
 Identities = 109/403 (27%), Positives = 198/403 (49%), Gaps = 37/403 (9%)

Query: 57  SSLLSVDLSGSDVTDSGLIHLKDCSNLQSLDFNFCIQISDGGLEHLRGLSNLTSLSFRRN 116
           +  +   L  ++VTD   +   D   + +L  +    I    ++ +  L+NLT ++F  N
Sbjct: 24  AEKMKTVLGKTNVTD--TVSQTDLDQVTTLQADRL-GIKS--IDGVEYLNNLTQINFSNN 78

Query: 117 NAITAQGMKAFAGLINLVKLDLERCTRIHGGLVNLKGLMKLESLNIKWCNCITDSDMKPL 176
             +T   +     L  LV + +    +I   +  L  L  L  L + + N ITD D  PL
Sbjct: 79  Q-LT--DITPLKNLTKLVDILMNNN-QIA-DITPLANLTNLTGLTL-FNNQITDID--PL 130

Query: 177 SGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACLDSLSALGSLFYLNLN 236
             LTNL  L++S + ++D  I+ L GL  L  L+          L  L+ L +L  L+++
Sbjct: 131 KNLTNLNRLELSSNTISD--ISALSGLTSLQQLSFGNQVTD---LKPLANLTTLERLDIS 185

Query: 237 RCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNLDSCGIGDEGLVNL 296
             ++SD      +K+ +L+ L    N+I+D  +  L  LTNL+ L+L+   +  + +  L
Sbjct: 186 SNKVSD--ISVLAKLTNLESLIATNNQISD--ITPLGILTNLDELSLNGNQL--KDIGTL 239

Query: 297 TGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISDGSLRKLAGLSSLKSLNLD 356
             L NL  L+L++ Q+  S L  LSGLT L  + L    IS+  +  LAGL++L +L L+
Sbjct: 240 ASLTNLTDLDLANNQI--SNLAPLSGLTKLTELKLGANQISN--ISPLAGLTALTNLELN 295

Query: 357 ARQITDTGLAALTSLTGLTHLDLFGARITDSGAAYLRNFKNLRSLEICGGGLTDAGVKHI 416
             Q+ D  ++ +++L  LT+L L+   I+D     + +   L+ L      ++D  V  +
Sbjct: 296 ENQLED--ISPISNLKNLTYLTLYFNNISDISP--VSSLTKLQRLFFYNNKVSD--VSSL 349

Query: 417 KDLSSLTLLNLSQNCNLTDKTLELISGLTGLVSLNVSNSRITS 459
            +L+++  L+   N  ++D  L  ++ LT +  L +++   T+
Sbjct: 350 ANLTNINWLSAGHN-QISD--LTPLANLTRITQLGLNDQAWTN 389

>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A Length = 466

 Score =  155 bits (393), Expect = 2e-42
 Identities = 109/403 (27%), Positives = 185/403 (45%), Gaps = 35/403 (8%)

Query: 57  SSLLSVDLSGSDVTDSGLIHLKDCSNLQSLDFNFCIQISDGGLEHLRGLSNLTSLSFRRN 116
           ++L  ++ S + +TD  +  LK+ + L  +  N   QI+D  +  L  L+NLT L+   N
Sbjct: 68  NNLTQINFSNNQLTD--ITPLKNLTKLVDILMNNN-QIAD--ITPLANLTNLTGLTLFNN 122

Query: 117 NAITAQGMKAFAGLINLVKLDLERCTRIHGGLVNLKGLMKLESLNIKWCNCITDSDMKPL 176
             IT   +     L NL +L+L     I   +  L GL  L+ L+    N +TD   KPL
Sbjct: 123 Q-IT--DIDPLKNLTNLNRLELSSN-TISD-ISALSGLTSLQQLSFG--NQVTDL--KPL 173

Query: 177 SGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACLDSLSALGSLFYLNLN 236
           + LT L+ L IS +KV+D  I+ L  L  L  L      ++   +  L  L +L  L+LN
Sbjct: 174 ANLTTLERLDISSNKVSD--ISVLAKLTNLESLIATNNQISD--ITPLGILTNLDELSLN 229

Query: 237 RCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNLDSCGIGDEGLVNL 296
             QL D      + + +L  L+L  N+I++  L  L GLT L  L L +  I    +  L
Sbjct: 230 GNQLKDI--GTLASLTNLTDLDLANNQISN--LAPLSGLTKLTELKLGANQI--SNISPL 283

Query: 297 TGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISDGSLRKLAGLSSLKSLNLD 356
            GL  L  LEL++ Q+    +  +S L NL  + L F  ISD  +  ++ L+ L+ L   
Sbjct: 284 AGLTALTNLELNENQL--EDISPISNLKNLTYLTLYFNNISD--ISPVSSLTKLQRLFFY 339

Query: 357 ARQITDTGLAALTSLTGLTHLDLFGARITDSGAAYLRNFKNLRSLEICGGGLTDAGVKHI 416
             +++D  +++L +LT +  L     +I+D     L N   +  L +     T+     +
Sbjct: 340 NNKVSD--VSSLANLTNINWLSAGHNQISDLTP--LANLTRITQLGLNDQAWTN---APV 392

Query: 417 KDLSSLTLLNLSQNCNLTDKTLELISGLTGLVSLNVSNSRITS 459
              +++++ N  +N          IS        +++ +  + 
Sbjct: 393 NYKANVSIPNTVKNVTGALIAPATISDGGSYTEPDITWNLPSY 435

>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A Length = 466

 Score =  154 bits (391), Expect = 5e-42
 Identities = 100/386 (25%), Positives = 175/386 (45%), Gaps = 35/386 (9%)

Query: 74  LIHLKDCSNLQSLDFNFCIQISDGGLEHLRGLSNLTSLSFRRNNAITAQGMKAFAGLINL 133
           +      +            ++D        L  +T+L   R   I    +     L NL
Sbjct: 17  IFTDTALAEKMKTVLGKT-NVTD--TVSQTDLDQVTTLQADRLG-IK--SIDGVEYLNNL 70

Query: 134 VKLDLERCTRIHGGLVNLKGLMKLESLNIKWCNCITDSDMKPLSGLTNLKSLQISCSKVT 193
            +++     ++   +  LK L KL  + +   N I   D+ PL+ LTNL  L +  +++T
Sbjct: 71  TQINF-SNNQLT-DITPLKNLTKLVDILMNN-NQIA--DITPLANLTNLTGLTLFNNQIT 125

Query: 194 DSGIAYLKGLQKLTLLNLEGCPVTAACLDSLSALGSLFYLNLNRCQLSDDGCEKFSKIGS 253
           D  I  LK L  L  L L    ++   + +LS L SL  L+              + + +
Sbjct: 126 D--IDPLKNLTNLNRLELSSNTISD--ISALSGLTSLQQLSFGNQVTDLKP---LANLTT 178

Query: 254 LKVLNLGFNEITDECLVHLKGLTNLESLNLDSCGIGDEGLVNLTGLCNLKCLELSDTQVG 313
           L+ L++  N+++D  +  L  LTNLESL   +  I    +  L  L NL  L L+  Q+ 
Sbjct: 179 LERLDISSNKVSD--ISVLAKLTNLESLIATNNQI--SDITPLGILTNLDELSLNGNQL- 233

Query: 314 SSGLRHLSGLTNLESINLSFTGISDGSLRKLAGLSSLKSLNLDARQITDTGLAALTSLTG 373
              +  L+ LTNL  ++L+   IS+  L  L+GL+ L  L L A QI++  ++ L  LT 
Sbjct: 234 -KDIGTLASLTNLTDLDLANNQISN--LAPLSGLTKLTELKLGANQISN--ISPLAGLTA 288

Query: 374 LTHLDLFGARITDSGAAYLRNFKNLRSLEICGGGLTDAGVKHIKDLSSLTLLNLSQNCNL 433
           LT+L+L   ++ D   + + N KNL  L +    ++D  +  +  L+ L  L    N  +
Sbjct: 289 LTNLELNENQLEDI--SPISNLKNLTYLTLYFNNISD--ISPVSSLTKLQRLFFYNN-KV 343

Query: 434 TDKTLELISGLTGLVSLNVSNSRITS 459
           +D  +  ++ LT +  L+  +++I+ 
Sbjct: 344 SD--VSSLANLTNINWLSAGHNQISD 367

>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A Length = 466

 Score =  145 bits (369), Expect = 6e-39
 Identities = 94/403 (23%), Positives = 177/403 (43%), Gaps = 35/403 (8%)

Query: 57  SSLLSVDLSGSDVTDSGLIHLKDCSNLQSLDFNFCIQISDGGLEHLRGLSNLTSLSFRRN 116
             + ++      +    +  ++  +NL  ++F+   Q++D  +  L+ L+ L  +    N
Sbjct: 46  DQVTTLQADRLGIKS--IDGVEYLNNLTQINFSNN-QLTD--ITPLKNLTKLVDILMNNN 100

Query: 117 NAITAQGMKAFAGLINLVKLDLERCTRIHGGLVNLKGLMKLESLNIKWCNCITDSDMKPL 176
             I    +   A L NL  L L    +I   +  LK L  L  L +        SD+  L
Sbjct: 101 Q-IA--DITPLANLTNLTGLTLFNN-QITD-IDPLKNLTNLNRLELSSNTI---SDISAL 152

Query: 177 SGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACLDSLSALGSLFYLNLN 236
           SGLT+L+ L         + +  L  L  L  L++    V+   +  L+ L +L  L   
Sbjct: 153 SGLTSLQQLSFGNQV---TDLKPLANLTTLERLDISSNKVSD--ISVLAKLTNLESLIAT 207

Query: 237 RCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNLDSCGIGDEGLVNL 296
             Q+SD        + +L  L+L  N++ D  +  L  LTNL  L+L +  I    L  L
Sbjct: 208 NNQISDI--TPLGILTNLDELSLNGNQLKD--IGTLASLTNLTDLDLANNQI--SNLAPL 261

Query: 297 TGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISDGSLRKLAGLSSLKSLNLD 356
           +GL  L  L+L   Q+  S +  L+GLT L ++ L+   + D  +  ++ L +L  L L 
Sbjct: 262 SGLTKLTELKLGANQI--SNISPLAGLTALTNLELNENQLED--ISPISNLKNLTYLTLY 317

Query: 357 ARQITDTGLAALTSLTGLTHLDLFGARITDSGAAYLRNFKNLRSLEICGGGLTDAGVKHI 416
              I+D  ++ ++SLT L  L  +  +++D  +  L N  N+  L      ++D  +  +
Sbjct: 318 FNNISD--ISPVSSLTKLQRLFFYNNKVSDVSS--LANLTNINWLSAGHNQISD--LTPL 371

Query: 417 KDLSSLTLLNLSQNCNLTDKTLELISGLTGLVSLNVSNSRITS 459
            +L+ +T L L+ +   T+  +   + ++   ++      + +
Sbjct: 372 ANLTRITQLGLN-DQAWTNAPVNYKANVSIPNTVKNVTGALIA 413

>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B} Length = 347

 Score =  153 bits (390), Expect = 6e-43
 Identities = 90/356 (25%), Positives = 167/356 (46%), Gaps = 31/356 (8%)

Query: 104 GLSNLTSLSFRRNNAITAQGMKAFAGLINLVKLDLERCTRIHGGLVNLKGLMKLESLNIK 163
           G + L +L       I    +   A L   ++  L++   +   +V  + L  +  L + 
Sbjct: 1   GAATLATL----PAPIN--QIFPDADLAEGIRAVLQKA-SVTD-VVTQEELESITKLVVA 52

Query: 164 WCNCITDSDMKPLSGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACLDS 223
               +    ++ +  LTNL+ L ++ +++TD  I+ L  L KLT L +    +T   + +
Sbjct: 53  G-EKVAS--IQGIEYLTNLEYLNLNGNQITD--ISPLSNLVKLTNLYIGTNKIT--DISA 105

Query: 224 LSALGSLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNL 283
           L  L +L  L LN   +SD      + +  +  LNLG N    + L  L  +T L  L +
Sbjct: 106 LQNLTNLRELYLNEDNISD--ISPLANLTKMYSLNLGANHNLSD-LSPLSNMTGLNYLTV 162

Query: 284 DSCGIGDEGLVNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISDGSLRK 343
               +  + +  +  L +L  L L+  Q+    +  L+ LT+L         I+D  +  
Sbjct: 163 TESKV--KDVTPIANLTDLYSLSLNYNQI--EDISPLASLTSLHYFTAYVNQITD--ITP 216

Query: 344 LAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLFGARITDSGAAYLRNFKNLRSLEI 403
           +A ++ L SL +   +ITD  L+ L +L+ LT L++   +I+D  A  +++   L+ L +
Sbjct: 217 VANMTRLNSLKIGNNKITD--LSPLANLSQLTWLEIGTNQISDINA--VKDLTKLKMLNV 272

Query: 404 CGGGLTDAGVKHIKDLSSLTLLNLSQNCNLTDKTLELISGLTGLVSLNVSNSRITS 459
               ++D  +  + +LS L  L L+ N  L ++ +E+I GLT L +L +S + IT 
Sbjct: 273 GSNQISD--ISVLNNLSQLNSLFLNNN-QLGNEDMEVIGGLTNLTTLFLSQNHITD 325

>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B} Length = 347

 Score =  151 bits (384), Expect = 6e-42
 Identities = 82/372 (22%), Positives = 157/372 (42%), Gaps = 30/372 (8%)

Query: 59  LLSVDLSGSDVTDSGLIHLKDCSNLQSLDFNFCIQISDGGLEHLRGLSNLTSLSFRRNNA 118
             ++    + +    +    D +            ++D  +     L ++T L       
Sbjct: 2   AATLATLPAPINQ--IFPDADLAEGIRAVLQKA-SVTD--VVTQEELESITKLVVAGEK- 55

Query: 119 ITAQGMKAFAGLINLVKLDLERCTRIHGGLVNLKGLMKLESLNIKWCNCITDSDMKPLSG 178
           +    ++    L NL  L+L    +I   +  L  L+KL +L I   N ITD  +  L  
Sbjct: 56  VA--SIQGIEYLTNLEYLNLNGN-QITD-ISPLSNLVKLTNLYIGT-NKITD--ISALQN 108

Query: 179 LTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACLDSLSALGSLFYLNLNRC 238
           LTNL+ L ++   ++D  I+ L  L K+  LNL      +  L  LS +  L YL +   
Sbjct: 109 LTNLRELYLNEDNISD--ISPLANLTKMYSLNLGANHNLSD-LSPLSNMTGLNYLTVTES 165

Query: 239 QLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNLDSCGIGDEGLVNLTG 298
           ++ D      + +  L  L+L +N+I D  +  L  LT+L         I    +  +  
Sbjct: 166 KVKD--VTPIANLTDLYSLSLNYNQIED--ISPLASLTSLHYFTAYVNQI--TDITPVAN 219

Query: 299 LCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISDGSLRKLAGLSSLKSLNLDAR 358
           +  L  L++ + ++  + L  L+ L+ L  + +    ISD  +  +  L+ LK LN+ + 
Sbjct: 220 MTRLNSLKIGNNKI--TDLSPLANLSQLTWLEIGTNQISD--INAVKDLTKLKMLNVGSN 275

Query: 359 QITDTGLAALTSLTGLTHLDLFGARITDSGAAYLRNFKNLRSLEICGGGLTDAGVKHIKD 418
           QI+D  ++ L +L+ L  L L   ++ +     +    NL +L +    +TD  ++ +  
Sbjct: 276 QISD--ISVLNNLSQLNSLFLNNNQLGNEDMEVIGGLTNLTTLFLSQNHITD--IRPLAS 331

Query: 419 LSSLTLLNLSQN 430
           LS +   + +  
Sbjct: 332 LSKMDSADFANQ 343

>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B} Length = 347

 Score =  150 bits (382), Expect = 1e-41
 Identities = 97/376 (25%), Positives = 171/376 (45%), Gaps = 31/376 (8%)

Query: 83  LQSLDFNFCIQISDGGLEHLRGLSNLTSLSFRRNNAITAQGMKAFAGLINLVKLDLERCT 142
             +L       I+   +     L+       ++ + +T   +     L ++ KL +    
Sbjct: 2   AATLATLPA-PINQ--IFPDADLAEGIRAVLQKAS-VT--DVVTQEELESITKLVV-AGE 54

Query: 143 RIHGGLVNLKGLMKLESLNIKWCNCITDSDMKPLSGLTNLKSLQISCSKVTDSGIAYLKG 202
           ++   +  ++ L  LE LN+   N ITD  + PLS L  L +L I  +K+TD  I+ L+ 
Sbjct: 55  KVAS-IQGIEYLTNLEYLNLNG-NQITD--ISPLSNLVKLTNLYIGTNKITD--ISALQN 108

Query: 203 LQKLTLLNLEGCPVTAACLDSLSALGSLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFN 262
           L  L  L L    ++   +  L+ L  ++ LNL       D     S +  L  L +  +
Sbjct: 109 LTNLRELYLNEDNISD--ISPLANLTKMYSLNLGANHNLSD-LSPLSNMTGLNYLTVTES 165

Query: 263 EITDECLVHLKGLTNLESLNLDSCGIGDEGLVNLTGLCNLKCLELSDTQVGSSGLRHLSG 322
           ++ D  +  +  LT+L SL+L+   I  E +  L  L +L        Q+  + +  ++ 
Sbjct: 166 KVKD--VTPIANLTDLYSLSLNYNQI--EDISPLASLTSLHYFTAYVNQI--TDITPVAN 219

Query: 323 LTNLESINLSFTGISDGSLRKLAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLFGA 382
           +T L S+ +    I+D  L  LA LS L  L +   QI+D  + A+  LT L  L++   
Sbjct: 220 MTRLNSLKIGNNKITD--LSPLANLSQLTWLEIGTNQISD--INAVKDLTKLKMLNVGSN 275

Query: 383 RITDSGAAYLRNFKNLRSLEICGGGLTDAGVKHIKDLSSLTLLNLSQNCNLTDKTLELIS 442
           +I+D     L N   L SL +    L +  ++ I  L++LT L LSQN ++TD  +  ++
Sbjct: 276 QISDISV--LNNLSQLNSLFLNNNQLGNEDMEVIGGLTNLTTLFLSQN-HITD--IRPLA 330

Query: 443 GLTGLVSLNVSNSRIT 458
            L+ + S + +N  I 
Sbjct: 331 SLSKMDSADFANQVIK 346

>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B} Length = 347

 Score =  141 bits (358), Expect = 3e-38
 Identities = 91/329 (27%), Positives = 150/329 (45%), Gaps = 26/329 (7%)

Query: 57  SSLLSVDLSGSDVTDSGLIHLKDCSNLQSLDFNFCIQISDGGLEHLRGLSNLTSLSFRRN 116
            S+  + ++G  V    +  ++  +NL+ L+ N   QI+D  +  L  L  LT+L     
Sbjct: 44  ESITKLVVAGEKVAS--IQGIEYLTNLEYLNLNGN-QITD--ISPLSNLVKLTNLYIG-T 97

Query: 117 NAITAQGMKAFAGLINLVKLDLERCTRIHGGLVNLKGLMKLESLNIKWCNCITDSDMKPL 176
           N IT   + A   L NL +L L     I   +  L  L K+ SLN+   + +  SD+ PL
Sbjct: 98  NKIT--DISALQNLTNLRELYLNED-NISD-ISPLANLTKMYSLNLGANHNL--SDLSPL 151

Query: 177 SGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACLDSLSALGSLFYLNLN 236
           S +T L  L ++ SKV D  +  +  L  L  L+L    +    +  L++L SL Y    
Sbjct: 152 SNMTGLNYLTVTESKVKD--VTPIANLTDLYSLSLNYNQIED--ISPLASLTSLHYFTAY 207

Query: 237 RCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNLDSCGIGDEGLVNL 296
             Q++D      + +  L  L +G N+ITD  L  L  L+ L  L + +  I    +  +
Sbjct: 208 VNQITDI--TPVANMTRLNSLKIGNNKITD--LSPLANLSQLTWLEIGTNQI--SDINAV 261

Query: 297 TGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISDGSLRKLAGLSSLKSLNLD 356
             L  LK L +   Q+  S +  L+ L+ L S+ L+   + +  +  + GL++L +L L 
Sbjct: 262 KDLTKLKMLNVGSNQI--SDISVLNNLSQLNSLFLNNNQLGNEDMEVIGGLTNLTTLFLS 319

Query: 357 ARQITDTGLAALTSLTGLTHLDLFGARIT 385
              ITD  +  L SL+ +   D     I 
Sbjct: 320 QNHITD--IRPLASLSKMDSADFANQVIK 346

>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B} Length = 347

 Score =  138 bits (349), Expect = 5e-37
 Identities = 85/347 (24%), Positives = 151/347 (43%), Gaps = 31/347 (8%)

Query: 57  SSLLSVDLSGSDVTDSGLIHLKDCSNLQSLDFNFCIQISDGGLEHLRGLSNLTSLSFRRN 116
           +  +   L  + VTD  ++  ++  ++  L      +++   ++ +  L+NL  L+   N
Sbjct: 22  AEGIRAVLQKASVTD--VVTQEELESITKLVVAGE-KVAS--IQGIEYLTNLEYLNLNGN 76

Query: 117 NAITAQGMKAFAGLINLVKLDLERCTRIHGGLVNLKGLMKLESLNIKWCNCITDSDMKPL 176
             IT   +   + L+ L  L +    +I   +  L+ L  L  L +   + I+D    PL
Sbjct: 77  Q-IT--DISPLSNLVKLTNLYI-GTNKITD-ISALQNLTNLRELYL-NEDNISDIS--PL 128

Query: 177 SGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACLDSLSALGSLFYLNLN 236
           + LT + SL +  +    S ++ L  +  L  L +    V    +  ++ L  L+ L+LN
Sbjct: 129 ANLTKMYSLNLGANHNL-SDLSPLSNMTGLNYLTVTESKVKD--VTPIANLTDLYSLSLN 185

Query: 237 RCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNLDSCGIGDEGLVNL 296
             Q+ D      + + SL       N+ITD  +  +  +T L SL + +  I    L  L
Sbjct: 186 YNQIEDI--SPLASLTSLHYFTAYVNQITD--ITPVANMTRLNSLKIGNNKI--TDLSPL 239

Query: 297 TGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISDGSLRKLAGLSSLKSLNLD 356
             L  L  LE+   Q+  S +  +  LT L+ +N+    ISD  +  L  LS L SL L+
Sbjct: 240 ANLSQLTWLEIGTNQI--SDINAVKDLTKLKMLNVGSNQISD--ISVLNNLSQLNSLFLN 295

Query: 357 ARQITDTGLAALTSLTGLTHLDLFGARITDSGAAYLRNFKNLRSLEI 403
             Q+ +  +  +  LT LT L L    ITD     +R   +L  ++ 
Sbjct: 296 NNQLGNEDMEVIGGLTNLTTLFLSQNHITD-----IRPLASLSKMDS 337

>1z7x_W Ribonuclease inhibitor; leucine-rich repeat, enzyme- inhibitor complex, structural genomics, protein structure initiative, PSI, CESG; HET: CIT; 1.95A {Homo sapiens} SCOP: c.10.1.1 PDB: 2q4g_W* 2bex_A 1a4y_A 2bnh_A 1dfj_I Length = 461

 Score =  143 bits (364), Expect = 2e-38
 Identities = 87/463 (18%), Positives = 167/463 (36%), Gaps = 72/463 (15%)

Query: 57  SSLLSVDLSGSDVTDSGLIHL-KDCSNLQSLDFNFCIQISDGGLEH----LRGLSNLTSL 111
             + S+D+   +++D+    L       Q +  + C  +++   +     LR    L  L
Sbjct: 3   LDIQSLDIQCEELSDARWAELLPLLQQCQVVRLDDC-GLTEARCKDISSALRVNPALAEL 61

Query: 112 SFRRNNAITAQGMKAFAGLI-----NLVKLDLERCTRIHGGLVNLKGLMK----LESLNI 162
           +  R+N +   G+      +      + KL L+ C     G   L   ++    L+ L++
Sbjct: 62  NL-RSNELGDVGVHCVLQGLQTPSCKIQKLSLQNCCLTGAGCGVLSSTLRTLPTLQELHL 120

Query: 163 KWCNCITDSDMKPLSGL-----TNLKSLQISCSKVTDSGIAY----LKGLQKLTLLNLEG 213
              N + D+ ++ L          L+ LQ+    ++ +        L+       L +  
Sbjct: 121 SD-NLLGDAGLQLLCEGLLDPQCRLEKLQLEYCSLSAASCEPLASVLRAKPDFKELTVSN 179

Query: 214 CPVTAACLDSLSAL-----GSLFYLNLNRCQLSDDGCEKFSKI----GSLKVLNLGFNEI 264
             +  A +  L          L  L L  C ++ D C     I     SL+ L LG N++
Sbjct: 180 NDINEAGVRVLCQGLKDSPCQLEALKLESCGVTSDNCRDLCGIVASKASLRELALGSNKL 239

Query: 265 TDECLVHL-----KGLTNLESLNLDSCGIGDEGLVNLT----GLCNLKCLELSDTQVGSS 315
            D  +  L        + L +L +  CGI  +G  +L        +LK L L+  ++G  
Sbjct: 240 GDVGMAELCPGLLHPSSRLRTLWIWECGITAKGCGDLCRVLRAKESLKELSLAGNELGDE 299

Query: 316 GLRHLSGL-----TNLESINLSFTGISDGSLRKLAGL----SSLKSLNLDARQITDTGLA 366
           G R L          LES+ +     +       + +      L  L +   ++ D G+ 
Sbjct: 300 GARLLCETLLEPGCQLESLWVKSCSFTAACCSHFSSVLAQNRFLLELQISNNRLEDAGVR 359

Query: 367 AL-----TSLTGLTHLDLFGARITDSGAAY----LRNFKNLRSLEICGGGLTDAGVKHIK 417
            L        + L  L L    ++DS  +     L    +LR L++    L DAG+  + 
Sbjct: 360 ELCQGLGQPGSVLRVLWLADCDVSDSSCSSLAATLLANHSLRELDLSNNCLGDAGILQLV 419

Query: 418 DL-----SSLTLLNLSQNCNLTDKTLELISGL----TGLVSLN 451
           +        L  L L  +   +++  + +  L      L  ++
Sbjct: 420 ESVRQPGCLLEQLVLY-DIYWSEEMEDRLQALEKDKPSLRVIS 461

>1z7x_W Ribonuclease inhibitor; leucine-rich repeat, enzyme- inhibitor complex, structural genomics, protein structure initiative, PSI, CESG; HET: CIT; 1.95A {Homo sapiens} SCOP: c.10.1.1 PDB: 2q4g_W* 2bex_A 1a4y_A 2bnh_A 1dfj_I Length = 461

 Score =  135 bits (341), Expect = 5e-35
 Identities = 76/332 (22%), Positives = 131/332 (39%), Gaps = 47/332 (14%)

Query: 180 TNLKSLQISCSKVTDSGIAYL-KGLQKLTLLNLEGCPVTAACLDSLSAL----GSLFYLN 234
            +++SL I C +++D+  A L   LQ+  ++ L+ C +T A    +S+      +L  LN
Sbjct: 3   LDIQSLDIQCEELSDARWAELLPLLQQCQVVRLDDCGLTEARCKDISSALRVNPALAELN 62

Query: 235 LNRCQLSDDGCEKFSKI-----GSLKVLNLGFNEITDECLVH----LKGLTNLESLNLDS 285
           L   +L D G     +        ++ L+L    +T          L+ L  L+ L+L  
Sbjct: 63  LRSNELGDVGVHCVLQGLQTPSCKIQKLSLQNCCLTGAGCGVLSSTLRTLPTLQELHLSD 122

Query: 286 CGIGDEGLVNLTGL-----CNLKCLELSDTQVGSSGLRH----LSGLTNLESINLSFTGI 336
             +GD GL  L        C L+ L+L    + ++        L    + + + +S   I
Sbjct: 123 NLLGDAGLQLLCEGLLDPQCRLEKLQLEYCSLSAASCEPLASVLRAKPDFKELTVSNNDI 182

Query: 337 SDGSLRKLAGL-----SSLKSLNLDARQITDTGLA----ALTSLTGLTHLDLFGARITDS 387
           ++  +R L          L++L L++  +T          + S   L  L L   ++ D 
Sbjct: 183 NEAGVRVLCQGLKDSPCQLEALKLESCGVTSDNCRDLCGIVASKASLRELALGSNKLGDV 242

Query: 388 GA-----AYLRNFKNLRSLEICGGGLTDAGVKHI----KDLSSLTLLNLSQNCNLTDKTL 438
           G        L     LR+L I   G+T  G   +    +   SL  L+L+ N  L D+  
Sbjct: 243 GMAELCPGLLHPSSRLRTLWIWECGITAKGCGDLCRVLRAKESLKELSLAGN-ELGDEGA 301

Query: 439 ELISGL-----TGLVSLNVSNSRITSAGLRHL 465
            L+          L SL V +   T+A   H 
Sbjct: 302 RLLCETLLEPGCQLESLWVKSCSFTAACCSHF 333

>1z7x_W Ribonuclease inhibitor; leucine-rich repeat, enzyme- inhibitor complex, structural genomics, protein structure initiative, PSI, CESG; HET: CIT; 1.95A {Homo sapiens} SCOP: c.10.1.1 PDB: 2q4g_W* 2bex_A 1a4y_A 2bnh_A 1dfj_I Length = 461

 Score =  128 bits (325), Expect = 7e-33
 Identities = 80/414 (19%), Positives = 145/414 (35%), Gaps = 80/414 (19%)

Query: 106 SNLTSLSFRRNNAITAQGMKAFAGLINLVKLDLERCTRIHGGLVNLKGLMKLESLNIKWC 165
            ++ SL  +    ++                              L  L + + + +  C
Sbjct: 3   LDIQSLDIQCEE-LSDARWAEL-----------------------LPLLQQCQVVRLDDC 38

Query: 166 NCITDSDMKPLSGL----TNLKSLQISCSKVTDSGIAYL-KGLQ----KLTLLNLEGCPV 216
             +T++  K +S        L  L +  +++ D G+  + +GLQ    K+  L+L+ C +
Sbjct: 39  G-LTEARCKDISSALRVNPALAELNLRSNELGDVGVHCVLQGLQTPSCKIQKLSLQNCCL 97

Query: 217 TAACLDSLSAL----GSLFYLNLNRCQLSDDGCEKFSKIG-----SLKVLNLGFNEITDE 267
           T A    LS+      +L  L+L+   L D G +   +        L+ L L +  ++  
Sbjct: 98  TGAGCGVLSSTLRTLPTLQELHLSDNLLGDAGLQLLCEGLLDPQCRLEKLQLEYCSLSAA 157

Query: 268 CLVH----LKGLTNLESLNLDSCGIGDEGLVNLTGL-----CNLKCLELSDTQVGSSGLR 318
                   L+   + + L + +  I + G+  L        C L+ L+L    V S   R
Sbjct: 158 SCEPLASVLRAKPDFKELTVSNNDINEAGVRVLCQGLKDSPCQLEALKLESCGVTSDNCR 217

Query: 319 HLSGL----TNLESINLSFTGISDGSLRKLA-----GLSSLKSLNLDARQITDTGLAALT 369
            L G+     +L  + L    + D  + +L        S L++L +    IT  G   L 
Sbjct: 218 DLCGIVASKASLRELALGSNKLGDVGMAELCPGLLHPSSRLRTLWIWECGITAKGCGDLC 277

Query: 370 SL----TGLTHLDLFGARITDSGAAYL-----RNFKNLRSLEICGGGLTDAGVKHI---- 416
            +      L  L L G  + D GA  L          L SL +     T A   H     
Sbjct: 278 RVLRAKESLKELSLAGNELGDEGARLLCETLLEPGCQLESLWVKSCSFTAACCSHFSSVL 337

Query: 417 KDLSSLTLLNLSQNCNLTDKTLELIS-----GLTGLVSLNVSNSRITSAGLRHL 465
                L  L +S N  L D  +  +        + L  L +++  ++ +    L
Sbjct: 338 AQNRFLLELQISNN-RLEDAGVRELCQGLGQPGSVLRVLWLADCDVSDSSCSSL 390

>1m9s_A Internalin B; cell invasion, GW domains, SH3 domains, signaling protein; 2.65A {Listeria monocytogenes} SCOP: b.1.18.15 b.34.11.1 b.34.11.1 b.34.11.1 c.10.2.1 PDB: 2y5q_A Length = 605

 Score =  132 bits (334), Expect = 1e-33
 Identities = 64/260 (24%), Positives = 110/260 (42%), Gaps = 18/260 (6%)

Query: 171 SDMKPLSGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACLDSLSALGSL 230
             + P           +    VTD        L  +  +      + +  +  +  L ++
Sbjct: 12  KQIFPDDAFAETIKDNLKKKSVTD--AVTQNELNSIDQIIANNSDIKS--VQGIQYLPNV 67

Query: 231 FYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNLDSCGIGD 290
             L LN  +L+D   +  + + +L  L L  N+I D  L  LK L  L+SL+L+  GI D
Sbjct: 68  TKLFLNGNKLTD--IKPLTNLKNLGWLFLDENKIKD--LSSLKDLKKLKSLSLEHNGISD 123

Query: 291 EGLVNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISDGSLRKLAGLSSL 350
             +  L  L  L+ L L + ++  + +  LS LT L++++L    ISD  +  LAGL+ L
Sbjct: 124 --INGLVHLPQLESLYLGNNKI--TDITVLSRLTKLDTLSLEDNQISD--IVPLAGLTKL 177

Query: 351 KSLNLDARQITDTGLAALTSLTGLTHLDLFGARITDSGAAYLRNFKNLRSLEICGGGLTD 410
           ++L L    I+D  L AL  L  L  L+LF     +    +  N     +++   G  + 
Sbjct: 178 QNLYLSKNHISD--LRALAGLKNLDVLELFSQECLNKPINHQSNLVVPNTVKNTDG--SL 233

Query: 411 AGVKHIKDLSSLTLLNLSQN 430
              + I D       N+  +
Sbjct: 234 VTPEIISDDGDYEKPNVKWH 253

>1m9s_A Internalin B; cell invasion, GW domains, SH3 domains, signaling protein; 2.65A {Listeria monocytogenes} SCOP: b.1.18.15 b.34.11.1 b.34.11.1 b.34.11.1 c.10.2.1 PDB: 2y5q_A Length = 605

 Score =  114 bits (286), Expect = 2e-27
 Identities = 64/277 (23%), Positives = 110/277 (39%), Gaps = 45/277 (16%)

Query: 57  SSLLSVDLSGSDVTDSGLIHLKDCSNLQSLDFNFCIQISDGGLEHLRGLSNLTSLSFRRN 116
           +  +  +L    VTD   +   + +++  +  N    I    ++ ++ L N+T L    N
Sbjct: 21  AETIKDNLKKKSVTD--AVTQNELNSIDQIIANNS-DIKS--VQGIQYLPNVTKLFLNGN 75

Query: 117 NAITAQGMKAFAGLINLVKLDLERCTRIHGGLVNLKGLMKLESLNIKWCNCITDSDMKPL 176
             +T   +K    L NL  L L+                          N I D  +  L
Sbjct: 76  K-LT--DIKPLTNLKNLGWLFLDE-------------------------NKIKD--LSSL 105

Query: 177 SGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACLDSLSALGSLFYLNLN 236
             L  LKSL +  + ++D  I  L  L +L  L L    +T   +  LS L  L  L+L 
Sbjct: 106 KDLKKLKSLSLEHNGISD--INGLVHLPQLESLYLGNNKIT--DITVLSRLTKLDTLSLE 161

Query: 237 RCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNLDSCGIGDEGLVNL 296
             Q+SD      + +  L+ L L  N I+D  L  L GL NL+ L L S    ++ + + 
Sbjct: 162 DNQISD--IVPLAGLTKLQNLYLSKNHISD--LRALAGLKNLDVLELFSQECLNKPINHQ 217

Query: 297 TGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSF 333
           + L     ++ +D  + +     +S   + E  N+ +
Sbjct: 218 SNLVVPNTVKNTDGSLVT--PEIISDDGDYEKPNVKW 252

>1m9s_A Internalin B; cell invasion, GW domains, SH3 domains, signaling protein; 2.65A {Listeria monocytogenes} SCOP: b.1.18.15 b.34.11.1 b.34.11.1 b.34.11.1 c.10.2.1 PDB: 2y5q_A Length = 605

 Score =  110 bits (276), Expect = 4e-26
 Identities = 49/216 (22%), Positives = 92/216 (42%), Gaps = 20/216 (9%)

Query: 254 LKVLNLGFNEITDECLVHLKGLTNLESLNLDSCGIGDEGLVNLTGLCNLKCLELSDTQVG 313
           +         I    +            NL    + D   V    L ++  +  +++ + 
Sbjct: 1   MGETITVSTPIKQ--IFPDDAFAETIKDNLKKKSVTD--AVTQNELNSIDQIIANNSDIK 56

Query: 314 SSGLRHLSGLTNLESINLSFTGISDGSLRKLAGLSSLKSLNLDARQITDTGLAALTSLTG 373
           S  ++ +  L N+  + L+   ++D  ++ L  L +L  L LD  +I D  L++L  L  
Sbjct: 57  S--VQGIQYLPNVTKLFLNGNKLTD--IKPLTNLKNLGWLFLDENKIKD--LSSLKDLKK 110

Query: 374 LTHLDLFGARITD-SGAAYLRNFKNLRSLEICGGGLTDAGVKHIKDLSSLTLLNLSQNCN 432
           L  L L    I+D +G   L +   L SL +    +TD  +  +  L+ L  L+L  N  
Sbjct: 111 LKSLSLEHNGISDING---LVHLPQLESLYLGNNKITD--ITVLSRLTKLDTLSLEDN-Q 164

Query: 433 LTDKTLELISGLTGLVSLNVSNSRITS-AGLRHLNH 467
           ++D  +  ++GLT L +L +S + I+    L  L +
Sbjct: 165 ISD--IVPLAGLTKLQNLYLSKNHISDLRALAGLKN 198

>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A* Length = 680

 Score =  132 bits (333), Expect = 3e-33
 Identities = 88/425 (20%), Positives = 152/425 (35%), Gaps = 27/425 (6%)

Query: 57  SSLLSVDLSGSDVTDSGLIHLKDCSNLQSLDFNFCIQISDGGLEHLRGLSNLTSLSFRRN 116
           +++  ++L+ + +      +    S L SLD  F   IS    E  + L  L  L+ + N
Sbjct: 25  TNITVLNLTHNQLRRLPAANFTRYSQLTSLDVGFN-TISKLEPELCQKLPMLKVLNLQHN 83

Query: 117 NAITAQGMKAFAGLINLVKLDLERC--TRIHGGLVNLKGLMKLESLNIKWCNCITDSDMK 174
             ++    K FA   NL +L L      +I            L +L++   N ++ + + 
Sbjct: 84  E-LSQLSDKTFAFCTNLTELHLMSNSIQKIKNNP--FVKQKNLITLDLSH-NGLSSTKLG 139

Query: 175 PLSGLTNLKSLQISCSKVTD--SGIAYLKGLQKLTLLNLEGCPVTAACLDSLSALGSLFY 232
               L NL+ L +S +K+    S    +     L  L L    +         A+G LF 
Sbjct: 140 TQVQLENLQELLLSNNKIQALKSEELDIFANSSLKKLELSSNQIKEFSPGCFHAIGRLFG 199

Query: 233 LNLNRCQLSDDGCEKFSKIG---SLKVLNLGFNEITDECLVHLKGL--TNLESLNLDSCG 287
           L LN  QL     EK        S++ L+L  ++++        GL  TNL  L+L    
Sbjct: 200 LFLNNVQLGPSLTEKLCLELANTSIRNLSLSNSQLSTTSNTTFLGLKWTNLTMLDLSYNN 259

Query: 288 IGDEGLVNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINL---------SFTGISD 338
           +   G  +   L  L+   L    +       L GL N+  +NL         S   +  
Sbjct: 260 LNVVGNDSFAWLPQLEYFFLEYNNIQHLFSHSLHGLFNVRYLNLKRSFTKQSISLASLPK 319

Query: 339 GSLRKLAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLFGARIT----DSGAAYLRN 394
                   L  L+ LN++   I        T L  L +L L  +  +     +       
Sbjct: 320 IDDFSFQWLKCLEHLNMEDNDIPGIKSNMFTGLINLKYLSLSNSFTSLRTLTNETFVSLA 379

Query: 395 FKNLRSLEICGGGLTDAGVKHIKDLSSLTLLNLSQNCNLTDKTLELISGLTGLVSLNVSN 454
              L  L +    ++         L  L +L+L  N    + T +   GL  +  + +S 
Sbjct: 380 HSPLHILNLTKNKISKIESDAFSWLGHLEVLDLGLNEIGQELTGQEWRGLENIFEIYLSY 439

Query: 455 SRITS 459
           ++   
Sbjct: 440 NKYLQ 444

>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A* Length = 680

 Score =  129 bits (327), Expect = 2e-32
 Identities = 96/457 (21%), Positives = 158/457 (34%), Gaps = 57/457 (12%)

Query: 57  SSLLSVDLSGSDVTDSGLIHLKDCSNLQSLDFNFC-IQISDGGLEHLRGLSNLTSLSFRR 115
            +L+++DLS + ++ + L       NLQ L  +   IQ        +   S+L  L    
Sbjct: 121 KNLITLDLSHNGLSSTKLGTQVQLENLQELLLSNNKIQALKSEELDIFANSSLKKLELSS 180

Query: 116 NNAITAQGMKAFAGLINLVKLDLERC---TRIHGGLVNLKGLMKLESLNIKWCNCITDSD 172
           N  I       F  +  L  L L        +   L        + +L++     ++ + 
Sbjct: 181 NQ-IKEFSPGCFHAIGRLFGLFLNNVQLGPSLTEKLCLELANTSIRNLSLSNSQ-LSTTS 238

Query: 173 MKPLSGL--TNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACLDSLSALGSL 230
                GL  TNL  L +S + +   G      L +L    LE   +      SL  L ++
Sbjct: 239 NTTFLGLKWTNLTMLDLSYNNLNVVGNDSFAWLPQLEYFFLEYNNIQHLFSHSLHGLFNV 298

Query: 231 FYLNLNR---------CQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESL 281
            YLNL R           L       F  +  L+ LN+  N+I         GL NL+ L
Sbjct: 299 RYLNLKRSFTKQSISLASLPKIDDFSFQWLKCLEHLNMEDNDIPGIKSNMFTGLINLKYL 358

Query: 282 NLDSCGIGDEGLVNLT----------------------------GLCNLKCLELSDTQVG 313
           +L +       L N T                             L +L+ L+L   ++G
Sbjct: 359 SLSNSFTSLRTLTNETFVSLAHSPLHILNLTKNKISKIESDAFSWLGHLEVLDLGLNEIG 418

Query: 314 SSGLRH-LSGLTNLESINLSFTGISDGSLRKLAGLSSLKSLNLDARQIT--DTGLAALTS 370
                    GL N+  I LS+      +    A + SL+ L L    +   D+  +    
Sbjct: 419 QELTGQEWRGLENIFEIYLSYNKYLQLTRNSFALVPSLQRLMLRRVALKNVDSSPSPFQP 478

Query: 371 LTGLTHLDLFGARITDSGAAYLRNFKNLRSL--------EICGGGLTDAGVKHIKDLSSL 422
           L  LT LDL    I +     L   + L  L         +         +  +K LS L
Sbjct: 479 LRNLTILDLSNNNIANINDDMLEGLEKLEILDLQHNNLARLWKHANPGGPIYFLKGLSHL 538

Query: 423 TLLNLSQNCNLTDKTLELISGLTGLVSLNVSNSRITS 459
            +LNL  N    +  +E+   L  L  +++  + + +
Sbjct: 539 HILNLESN-GFDEIPVEVFKDLFELKIIDLGLNNLNT 574

>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A* Length = 680

 Score =  126 bits (319), Expect = 2e-31
 Identities = 80/406 (19%), Positives = 140/406 (34%), Gaps = 27/406 (6%)

Query: 77  LKDCSNLQSLDFNFCIQISDGGLEHLRGLSNLTSLSFRRNNAITAQGMKAFAGLINLVKL 136
              C+NL  L       I            NL +L    N  +++  +     L NL +L
Sbjct: 93  FAFCTNLTELHLMSN-SIQKIKNNPFVKQKNLITLDLSHNG-LSSTKLGTQVQLENLQEL 150

Query: 137 DLERC--TRIHGGLVNLKGLMKLESLNIKWCNCITDSDMKPLSGLTNLKSLQISCSKVTD 194
            L       +    +++     L+ L +   N I +        +  L  L ++  ++  
Sbjct: 151 LLSNNKIQALKSEELDIFANSSLKKLELSS-NQIKEFSPGCFHAIGRLFGLFLNNVQLGP 209

Query: 195 S---GIAYLKGLQKLTLLNLEGCPVTAACLDSLSALG--SLFYLNLNRCQLSDDGCEKFS 249
           S    +        +  L+L    ++     +   L   +L  L+L+   L+  G + F+
Sbjct: 210 SLTEKLCLELANTSIRNLSLSNSQLSTTSNTTFLGLKWTNLTMLDLSYNNLNVVGNDSFA 269

Query: 250 KIGSLKVLNLGFNEITDECLVHLKGLTNLESLNLDS---------CGIGDEGLVNLTGLC 300
            +  L+   L +N I       L GL N+  LNL             +      +   L 
Sbjct: 270 WLPQLEYFFLEYNNIQHLFSHSLHGLFNVRYLNLKRSFTKQSISLASLPKIDDFSFQWLK 329

Query: 301 NLKCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISDGSLRKLA----GLSSLKSLNLD 356
            L+ L + D  +        +GL NL+ ++LS +  S  +L          S L  LNL 
Sbjct: 330 CLEHLNMEDNDIPGIKSNMFTGLINLKYLSLSNSFTSLRTLTNETFVSLAHSPLHILNLT 389

Query: 357 ARQITDTGLAALTSLTGLTHLDLFGARITDSGAAY-LRNFKNLRSLEICGGGLTDAGVKH 415
             +I+     A + L  L  LDL    I         R  +N+  + +            
Sbjct: 390 KNKISKIESDAFSWLGHLEVLDLGLNEIGQELTGQEWRGLENIFEIYLSYNKYLQLTRNS 449

Query: 416 IKDLSSLTLLNLSQNCNLT--DKTLELISGLTGLVSLNVSNSRITS 459
              + SL  L L +   L   D +      L  L  L++SN+ I +
Sbjct: 450 FALVPSLQRLMLRRV-ALKNVDSSPSPFQPLRNLTILDLSNNNIAN 494

>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A* Length = 680

 Score =  123 bits (311), Expect = 2e-30
 Identities = 77/376 (20%), Positives = 145/376 (38%), Gaps = 25/376 (6%)

Query: 105 LSNLTSLSFRRNNAITAQGMKAFAGLINLVKLDLERC--TRIHGGLVNLKGLMKLESLNI 162
            +N+T L+   N  +       F     L  LD+     +++   L   + L  L+ LN+
Sbjct: 24  PTNITVLNLTHNQ-LRRLPAANFTRYSQLTSLDVGFNTISKLEPEL--CQKLPMLKVLNL 80

Query: 163 KWCNCITDSDMKPLSGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACLD 222
           +    ++    K  +  TNL  L +  + +           + L  L+L    +++  L 
Sbjct: 81  QHNE-LSQLSDKTFAFCTNLTELHLMSNSIQKIKNNPFVKQKNLITLDLSHNGLSSTKLG 139

Query: 223 SLSALGSLFYLNLNRCQLSDDGCEKFSKIG--SLKVLNLGFNEITDECLVHLKGLTNLES 280
           +   L +L  L L+  ++     E+       SLK L L  N+I +        +  L  
Sbjct: 140 TQVQLENLQELLLSNNKIQALKSEELDIFANSSLKKLELSSNQIKEFSPGCFHAIGRLFG 199

Query: 281 LNLDSCGIGD---EGLVNLTGLCNLKCLELSDTQVGSSGLRHLSGL--TNLESINLSFTG 335
           L L++  +G    E L       +++ L LS++Q+ ++      GL  TNL  ++LS+  
Sbjct: 200 LFLNNVQLGPSLTEKLCLELANTSIRNLSLSNSQLSTTSNTTFLGLKWTNLTMLDLSYNN 259

Query: 336 ISDGSLRKLAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDL---------FGARITD 386
           ++       A L  L+   L+   I      +L  L  + +L+L           A +  
Sbjct: 260 LNVVGNDSFAWLPQLEYFFLEYNNIQHLFSHSLHGLFNVRYLNLKRSFTKQSISLASLPK 319

Query: 387 SGAAYLRNFKNLRSLEICGGGLTDAGVKHIKDLSSLTLLNLSQNC-NLTDKTLELISGL- 444
                 +  K L  L +    +          L +L  L+LS +  +L   T E    L 
Sbjct: 320 IDDFSFQWLKCLEHLNMEDNDIPGIKSNMFTGLINLKYLSLSNSFTSLRTLTNETFVSLA 379

Query: 445 -TGLVSLNVSNSRITS 459
            + L  LN++ ++I+ 
Sbjct: 380 HSPLHILNLTKNKISK 395

>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A* Length = 680

 Score =  119 bits (301), Expect = 5e-29
 Identities = 90/431 (20%), Positives = 155/431 (35%), Gaps = 32/431 (7%)

Query: 57  SSLLSVDLSG---SDVTDSGLIHLKDCSNLQSLDFNFC--IQISDGGLEHLRGLSNLTSL 111
             L  + L+           L      +++++L  +       S+     L+  +NLT L
Sbjct: 195 GRLFGLFLNNVQLGPSLTEKLCLELANTSIRNLSLSNSQLSTTSNTTFLGLK-WTNLTML 253

Query: 112 SFRRNNAITAQGMKAFAGLINLVKLDLERCTRIHGGLVNLKGLMKLESLNIK-------- 163
               NN +   G  +FA L  L    LE     H    +L GL  +  LN+K        
Sbjct: 254 DLSYNN-LNVVGNDSFAWLPQLEYFFLEYNNIQHLFSHSLHGLFNVRYLNLKRSFTKQSI 312

Query: 164 WCNCITDSDMKPLSGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACLDS 223
               +   D      L  L+ L +  + +         GL  L  L+L     +   L +
Sbjct: 313 SLASLPKIDDFSFQWLKCLEHLNMEDNDIPGIKSNMFTGLINLKYLSLSNSFTSLRTLTN 372

Query: 224 LS----ALGSLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVH-LKGLTNL 278
            +    A   L  LNL + ++S    + FS +G L+VL+LG NEI  E      +GL N+
Sbjct: 373 ETFVSLAHSPLHILNLTKNKISKIESDAFSWLGHLEVLDLGLNEIGQELTGQEWRGLENI 432

Query: 279 ESLNLDSCGIGDEGLVNLTGLCNLKCLELSDTQVGS--SGLRHLSGLTNLESINLSFTGI 336
             + L           +   + +L+ L L    + +  S       L NL  ++LS   I
Sbjct: 433 FEIYLSYNKYLQLTRNSFALVPSLQRLMLRRVALKNVDSSPSPFQPLRNLTILDLSNNNI 492

Query: 337 SDGSLRKLAGLSSLKSLNL--------DARQITDTGLAALTSLTGLTHLDLFGARITDSG 388
           ++ +   L GL  L+ L+L                 +  L  L+ L  L+L      +  
Sbjct: 493 ANINDDMLEGLEKLEILDLQHNNLARLWKHANPGGPIYFLKGLSHLHILNLESNGFDEIP 552

Query: 389 AAYLRNFKNLRSLEICGGGLTDAGVKHIKDLSSLTLLNLSQNCNLTDKTLE-LISGLTGL 447
               ++   L+ +++    L         +  SL  LNL +N  +T    +        L
Sbjct: 553 VEVFKDLFELKIIDLGLNNLNTLPASVFNNQVSLKSLNLQKN-LITSVEKKVFGPAFRNL 611

Query: 448 VSLNVSNSRIT 458
             L++  +   
Sbjct: 612 TELDMRFNPFD 622

>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A* Length = 680

 Score =  106 bits (267), Expect = 1e-24
 Identities = 71/375 (18%), Positives = 138/375 (36%), Gaps = 30/375 (8%)

Query: 55  QGSSLLSVDLSGSDVTDSGLIHLKDCSNLQSLDFNFCIQISDGGLEHLRGLSNLTSLSFR 114
           + ++L  +DLS +++   G         L+     +   I       L GL N+  L+ +
Sbjct: 246 KWTNLTMLDLSYNNLNVVGNDSFAWLPQLEYFFLEYN-NIQHLFSHSLHGLFNVRYLNLK 304

Query: 115 RN--------NAITAQGMKAFAGLINLVKLDLERC--TRIHGGLVNLKGLMKLESLNIKW 164
           R+         ++      +F  L  L  L++E      I   +    GL+ L+ L++  
Sbjct: 305 RSFTKQSISLASLPKIDDFSFQWLKCLEHLNMEDNDIPGIKSNM--FTGLINLKYLSLSN 362

Query: 165 CNCITDSDMKPLS----GLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAA- 219
            +  +   +   +      + L  L ++ +K++         L  L +L+L    +    
Sbjct: 363 -SFTSLRTLTNETFVSLAHSPLHILNLTKNKISKIESDAFSWLGHLEVLDLGLNEIGQEL 421

Query: 220 CLDSLSALGSLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEIT--DECLVHLKGLTN 277
                  L ++F + L+  +        F+ + SL+ L L    +   D      + L N
Sbjct: 422 TGQEWRGLENIFEIYLSYNKYLQLTRNSFALVPSLQRLMLRRVALKNVDSSPSPFQPLRN 481

Query: 278 LESLNLDSCGIGDEGLVNLTGLCNLKCLELSDTQ--------VGSSGLRHLSGLTNLESI 329
           L  L+L +  I +     L GL  L+ L+L                 +  L GL++L  +
Sbjct: 482 LTILDLSNNNIANINDDMLEGLEKLEILDLQHNNLARLWKHANPGGPIYFLKGLSHLHIL 541

Query: 330 NLSFTGISDGSLRKLAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLFGARITD-SG 388
           NL   G  +  +     L  LK ++L    +     +   +   L  L+L    IT    
Sbjct: 542 NLESNGFDEIPVEVFKDLFELKIIDLGLNNLNTLPASVFNNQVSLKSLNLQKNLITSVEK 601

Query: 389 AAYLRNFKNLRSLEI 403
             +   F+NL  L++
Sbjct: 602 KVFGPAFRNLTELDM 616

>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A* Length = 680

 Score = 96.6 bits (241), Expect = 2e-21
 Identities = 63/291 (21%), Positives = 110/291 (37%), Gaps = 8/291 (2%)

Query: 175 PLSGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACLDSLSALGSLFYLN 234
           P    TN+  L ++ +++     A      +LT L++    ++    +    L  L  LN
Sbjct: 20  PDDLPTNITVLNLTHNQLRRLPAANFTRYSQLTSLDVGFNTISKLEPELCQKLPMLKVLN 79

Query: 235 LNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNLDSCGIGDEGLV 294
           L   +LS    + F+   +L  L+L  N I            NL +L+L   G+    L 
Sbjct: 80  LQHNELSQLSDKTFAFCTNLTELHLMSNSIQKIKNNPFVKQKNLITLDLSHNGLSSTKLG 139

Query: 295 NLTGLCNLKCLELSDTQ--VGSSGLRHLSGLTNLESINLSFTGISDGSLRKLAGLSSLKS 352
               L NL+ L LS+ +     S    +   ++L+ + LS   I + S      +  L  
Sbjct: 140 TQVQLENLQELLLSNNKIQALKSEELDIFANSSLKKLELSSNQIKEFSPGCFHAIGRLFG 199

Query: 353 LNLDARQITDT---GLAALTSLTGLTHLDLFGARITDSGAAYLRNFK--NLRSLEICGGG 407
           L L+  Q+  +    L    + T + +L L  ++++ +        K  NL  L++    
Sbjct: 200 LFLNNVQLGPSLTEKLCLELANTSIRNLSLSNSQLSTTSNTTFLGLKWTNLTMLDLSYNN 259

Query: 408 LTDAGVKHIKDLSSLTLLNLSQNCNLTDKTLELISGLTGLVSLNVSNSRIT 458
           L   G      L  L    L  N N+       + GL  +  LN+  S   
Sbjct: 260 LNVVGNDSFAWLPQLEYFFLEYN-NIQHLFSHSLHGLFNVRYLNLKRSFTK 309

>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A* Length = 680

 Score = 76.2 bits (188), Expect = 7e-15
 Identities = 43/215 (20%), Positives = 77/215 (35%), Gaps = 6/215 (2%)

Query: 253 SLKVLNLGFNEITDECLVHLKGLTNLESLNLDSCGIGDEGLVNLTGLCNLKCLELSDTQV 312
           S +V +    ++T    V     TN+  LNL    +      N T    L  L++    +
Sbjct: 5   SHEVADCSHLKLTQ---VPDDLPTNITVLNLTHNQLRRLPAANFTRYSQLTSLDVGFNTI 61

Query: 313 GSSGLRHLSGLTNLESINLSFTGISDGSLRKLAGLSSLKSLNLDARQITDTGLAALTSLT 372
                     L  L+ +NL    +S  S +  A  ++L  L+L +  I            
Sbjct: 62  SKLEPELCQKLPMLKVLNLQHNELSQLSDKTFAFCTNLTELHLMSNSIQKIKNNPFVKQK 121

Query: 373 GLTHLDLFGARITDSGAAYLRNFKNLRSLEICGGGLTD--AGVKHIKDLSSLTLLNLSQN 430
            L  LDL    ++ +        +NL+ L +    +    +    I   SSL  L LS N
Sbjct: 122 NLITLDLSHNGLSSTKLGTQVQLENLQELLLSNNKIQALKSEELDIFANSSLKKLELSSN 181

Query: 431 CNLTDKTLELISGLTGLVSLNVSNSRITSAGLRHL 465
             + + +      +  L  L ++N ++  +    L
Sbjct: 182 -QIKEFSPGCFHAIGRLFGLFLNNVQLGPSLTEKL 215

>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A* Length = 680

 Score = 60.8 bits (148), Expect = 5e-10
 Identities = 41/222 (18%), Positives = 77/222 (34%), Gaps = 11/222 (4%)

Query: 57  SSLLSVDLSGSDVTDSGLIH-LKDCSNLQSLDFNFCIQISDGGLEHLRGLSNLTSLSFRR 115
             L  +DL  +++         +   N+  +  ++  +           + +L  L  RR
Sbjct: 405 GHLEVLDLGLNEIGQELTGQEWRGLENIFEIYLSYN-KYLQLTRNSFALVPSLQRLMLRR 463

Query: 116 NN-AITAQGMKAFAGLINLVKLDLERC---TRIHGGLVNLKGLMKLE----SLNIKWCNC 167
                       F  L NL  LDL            L  L+ L  L+    +L   W + 
Sbjct: 464 VALKNVDSSPSPFQPLRNLTILDLSNNNIANINDDMLEGLEKLEILDLQHNNLARLWKHA 523

Query: 168 ITDSDMKPLSGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACLDSLSAL 227
                +  L GL++L  L +  +   +  +   K L +L +++L    +        +  
Sbjct: 524 NPGGPIYFLKGLSHLHILNLESNGFDEIPVEVFKDLFELKIIDLGLNNLNTLPASVFNNQ 583

Query: 228 GSLFYLNLNRCQLSDDGCEKFSKI-GSLKVLNLGFNEITDEC 268
            SL  LNL +  ++    + F     +L  L++ FN     C
Sbjct: 584 VSLKSLNLQKNLITSVEKKVFGPAFRNLTELDMRFNPFDCTC 625

>1h6u_A Internalin H; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.8A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 Length = 308

 Score =  124 bits (314), Expect = 2e-32
 Identities = 73/291 (25%), Positives = 130/291 (44%), Gaps = 21/291 (7%)

Query: 171 SDMKPLSGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACLDSLSALGSL 230
           + + P   L N   +    S VTD        L  +T L+  G  VT   ++ +  L +L
Sbjct: 10  NVIFPDPALANAIKIAAGKSNVTD--TVTQADLDGITTLSAFGTGVTT--IEGVQYLNNL 65

Query: 231 FYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNLDSCGIGD 290
             L L   Q++D        +  +  L L  N + +  +  + GL ++++L+L S  I D
Sbjct: 66  IGLELKDNQITD--LAPLKNLTKITELELSGNPLKN--VSAIAGLQSIKTLDLTSTQITD 121

Query: 291 EGLVNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISDGSLRKLAGLSSL 350
             +  L GL NL+ L L   Q+  + +  L+GLTNL+ +++    +SD  L  LA LS L
Sbjct: 122 --VTPLAGLSNLQVLYLDLNQI--TNISPLAGLTNLQYLSIGNAQVSD--LTPLANLSKL 175

Query: 351 KSLNLDARQITDTGLAALTSLTGLTHLDLFGARITDSGAAYLRNFKNLRSLEICGGGLTD 410
            +L  D  +I+D  ++ L SL  L  + L   +I+D     L N  NL  + +    +T+
Sbjct: 176 TTLKADDNKISD--ISPLASLPNLIEVHLKNNQISDVSP--LANTSNLFIVTLTNQTITN 231

Query: 411 AGVKHIKDLSSLTLLNLSQNCNLTDKTLELISGLTGLVSLNVSNSRITSAG 461
              + +   ++L + N+ +  +        IS      S N++ +  +   
Sbjct: 232 ---QPVFYNNNLVVPNVVKGPSGAPIAPATISDNGTYASPNLTWNLTSFIN 279

>1h6u_A Internalin H; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.8A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 Length = 308

 Score =  100 bits (251), Expect = 7e-24
 Identities = 57/259 (22%), Positives = 115/259 (44%), Gaps = 25/259 (9%)

Query: 74  LIHLKDCSNLQSLDFNFCIQISDGGLEHLRGLSNLTSLSFRRNNAITAQGMKAFAGLINL 133
           +      +N   +       ++D        L  +T+LS      +T   ++    L NL
Sbjct: 12  IFPDPALANAIKIAAGKS-NVTD--TVTQADLDGITTLSAFGTG-VTT--IEGVQYLNNL 65

Query: 134 VKLDLE--RCTRIHGGLVNLKGLMKLESLNIKWCNCITDSDMKPLSGLTNLKSLQISCSK 191
           + L+L+  + T +      LK L K+  L +   N + +  +  ++GL ++K+L ++ ++
Sbjct: 66  IGLELKDNQITDL----APLKNLTKITELEL-SGNPLKN--VSAIAGLQSIKTLDLTSTQ 118

Query: 192 VTDSGIAYLKGLQKLTLLNLEGCPVTAACLDSLSALGSLFYLNLNRCQLSDDGCEKFSKI 251
           +TD  +  L GL  L +L L+   +T   +  L+ L +L YL++   Q+SD      + +
Sbjct: 119 ITD--VTPLAGLSNLQVLYLDLNQITN--ISPLAGLTNLQYLSIGNAQVSD--LTPLANL 172

Query: 252 GSLKVLNLGFNEITDECLVHLKGLTNLESLNLDSCGIGDEGLVNLTGLCNLKCLELSDTQ 311
             L  L    N+I+D  +  L  L NL  ++L +  I D  +  L    NL  + L++  
Sbjct: 173 SKLTTLKADDNKISD--ISPLASLPNLIEVHLKNNQISD--VSPLANTSNLFIVTLTNQT 228

Query: 312 VGSSGLRHLSGLTNLESIN 330
           + +  + + + L     + 
Sbjct: 229 ITNQPVFYNNNLVVPNVVK 247

>1h6u_A Internalin H; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.8A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 Length = 308

 Score = 52.4 bits (126), Expect = 1e-07
 Identities = 43/180 (23%), Positives = 77/180 (42%), Gaps = 17/180 (9%)

Query: 58  SLLSVDLSGSDVTDSGLIHLKDCSNLQSLDFNFCIQISDGGLEHLRGLSNLTSLSFRRNN 117
           S+ ++DL+ + +TD  +  L   SNLQ L  +   QI++  +  L GL+NL  LS   N 
Sbjct: 108 SIKTLDLTSTQITD--VTPLAGLSNLQVLYLDLN-QITN--ISPLAGLTNLQYLSIG-NA 161

Query: 118 AITAQGMKAFAGLINLVKLDLERCTRIHGGLVNLKGLMKLESLNIKWCNCITDSDMKPLS 177
            ++   +   A L  L  L  +        + ++  L  L +L          SD+ PL+
Sbjct: 162 QVS--DLTPLANLSKLTTLKAD-----DNKISDISPLASLPNLIEVHLKNNQISDVSPLA 214

Query: 178 GLTNLKSLQISCSKVTDSGIAYLKGLQKL-TLLNLEGCPVTAACLDSLSALGSLFYLNLN 236
             +NL  + ++   +T+  + Y   L     +    G P+      ++S  G+    NL 
Sbjct: 215 NTSNLFIVTLTNQTITNQPVFYNNNLVVPNVVKGPSGAPIA---PATISDNGTYASPNLT 271

>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A* Length = 606

 Score =  121 bits (305), Expect = 1e-29
 Identities = 85/415 (20%), Positives = 154/415 (37%), Gaps = 17/415 (4%)

Query: 57  SSLLSVDLSGSDVTDSGLIHLKDCSNLQSLDFNFCIQISDGGLEHLRGLSNLTSLSFRRN 116
            +L  +    + ++    I L +   L+SL       IS   L        L  L F+ N
Sbjct: 105 KALKHLFFIQTGISSIDFIPLHNQKTLESLYLGSN-HISSIKLPKGFPTEKLKVLDFQ-N 162

Query: 117 NAITAQGMKAFAGLINLVKLDLE-RCTRIHGGLVNLKGLMKLESLNIKWCNCITDSDMKP 175
           NAI     +  + L     L L      I G           +SLN            K 
Sbjct: 163 NAIHYLSKEDMSSLQQATNLSLNLNGNDIAGIEPGAFDSAVFQSLNFGG-TQNLLVIFKG 221

Query: 176 LSG--LTNLKSLQISCSKVTDSGIAYLKGLQKLTL--LNLEGCPVTAACLDSLSALGSLF 231
           L    + +L           D   A  +GL ++++  +NL+         ++      L 
Sbjct: 222 LKNSTIQSLWLGTFEDMDDEDISPAVFEGLCEMSVESINLQKHYFFNISSNTFHCFSGLQ 281

Query: 232 YLNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNLDSCGI-GD 290
            L+L    LS+        + +LK L L  N+  + C +      +L  L++       +
Sbjct: 282 ELDLTATHLSE-LPSGLVGLSTLKKLVLSANKFENLCQISASNFPSLTHLSIKGNTKRLE 340

Query: 291 EGLVNLTGLCNLKCLELSDTQVGSSGLRH--LSGLTNLESINLSFTGISDGSLRKLAGLS 348
            G   L  L NL+ L+LS   + +S   +  L  L++L+S+NLS+               
Sbjct: 341 LGTGCLENLENLRELDLSHDDIETSDCCNLQLRNLSHLQSLNLSYNEPLSLKTEAFKECP 400

Query: 349 SLKSLNLDARQITD-TGLAALTSLTGLTHLDLFGARITDSGAAYLRNFKNLRSLEICGGG 407
            L+ L+L   ++      +   +L  L  L+L  + +  S          L+ L + G  
Sbjct: 401 QLELLDLAFTRLKVKDAQSPFQNLHLLKVLNLSHSLLDISSEQLFDGLPALQHLNLQGNH 460

Query: 408 LTDAGVKH---IKDLSSLTLLNLSQNCNLTDKTLELISGLTGLVSLNVSNSRITS 459
                ++    ++ L  L +L LS  C+L+       + L  +  +++S++R+TS
Sbjct: 461 FPKGNIQKTNSLQTLGRLEILVLS-FCDLSSIDQHAFTSLKMMNHVDLSHNRLTS 514

>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A* Length = 606

 Score =  119 bits (301), Expect = 3e-29
 Identities = 83/390 (21%), Positives = 148/390 (37%), Gaps = 19/390 (4%)

Query: 81  SNLQSLDFNFCIQISDGGLEHLRGLSNLTSLSFRRNNAITAQGMKAFAGLINLVKLDLER 140
           ++ + L+F+F   +          L NLT L   R   I       F     L  L L  
Sbjct: 33  NSTECLEFSFN-VLPTIQNTTFSRLINLTFLDLTRCQ-IYWIHEDTFQSQHRLDTLVLTA 90

Query: 141 C--TRIHGGLVNLKGLMKLESLNIKWCNCITDSDMKPLSGLTNLKSLQISCSKVTDSGIA 198
                +      L G   L+ L       I+  D  PL     L+SL +  + ++   + 
Sbjct: 91  NPLIFMAETA--LSGPKALKHLFFIQTG-ISSIDFIPLHNQKTLESLYLGSNHISSIKLP 147

Query: 199 YLKGLQKLTLLNLEGCPVTAACLDSLSALGSL--FYLNLNRCQLSDDGCEKFSKIGSLKV 256
                +KL +L+ +   +     + +S+L       LNLN   ++      F      + 
Sbjct: 148 KGFPTEKLKVLDFQNNAIHYLSKEDMSSLQQATNLSLNLNGNDIAGIEPGAFDSA-VFQS 206

Query: 257 LNLGFNEITDECLVHLKG--LTNLESLNLDSCGIGDEGLVNLTGLC--NLKCLELSDTQV 312
           LN G  +        LK   + +L     +     D       GLC  +++ + L     
Sbjct: 207 LNFGGTQNLLVIFKGLKNSTIQSLWLGTFEDMDDEDISPAVFEGLCEMSVESINLQKHYF 266

Query: 313 GSSGLRHLSGLTNLESINLSFTGISDGSLRKLAGLSSLKSLNLDARQITDTGLAALTSLT 372
            +         + L+ ++L+ T +S+     L GLS+LK L L A +  +    + ++  
Sbjct: 267 FNISSNTFHCFSGLQELDLTATHLSELP-SGLVGLSTLKKLVLSANKFENLCQISASNFP 325

Query: 373 GLTHLDLFG-ARITDSGAAYLRNFKNLRSLEICGGGLTDAGVKH--IKDLSSLTLLNLSQ 429
            LTHL + G  +  + G   L N +NLR L++    +  +   +  +++LS L  LNLS 
Sbjct: 326 SLTHLSIKGNTKRLELGTGCLENLENLRELDLSHDDIETSDCCNLQLRNLSHLQSLNLSY 385

Query: 430 NCNLTDKTLELISGLTGLVSLNVSNSRITS 459
           N        E       L  L+++ +R+  
Sbjct: 386 N-EPLSLKTEAFKECPQLELLDLAFTRLKV 414

>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A* Length = 606

 Score =  118 bits (298), Expect = 9e-29
 Identities = 88/415 (21%), Positives = 142/415 (34%), Gaps = 20/415 (4%)

Query: 57  SSLLSVDLSGSDVTDSGLIHLKDCSNLQSLDFNFCIQISDGGLEHLRGLSNLTSLSFRRN 116
           +S   ++ S + +            NL  LD   C QI     +  +    L +L    N
Sbjct: 33  NSTECLEFSFNVLPTIQNTTFSRLINLTFLDLTRC-QIYWIHEDTFQSQHRLDTLVLTAN 91

Query: 117 NAITAQGMKAFAGLINLVKLDLERC--TRIHGGLVNLKGLMKLESLNIKWCNCITDSDMK 174
             +      A +G   L  L   +   + I      L     LESL +   N I+   + 
Sbjct: 92  P-LIFMAETALSGPKALKHLFFIQTGISSIDFIP--LHNQKTLESLYLGS-NHISSIKLP 147

Query: 175 PLSGLTNLKSLQISC---SKVTDSGIAYLKGLQKLTLLNLEGCPVTAACLDSLSALGSLF 231
                  LK L         ++   ++ L+    L+ LNL G  +               
Sbjct: 148 KGFPTEKLKVLDFQNNAIHYLSKEDMSSLQQATNLS-LNLNGNDIAGIE-PGAFDSAVFQ 205

Query: 232 YLNLNRCQLSDDGCE--KFSKIGSLKVLNLGFNEITDECLVHLKGL--TNLESLNLDSCG 287
            LN    Q      +  K S I SL +      +  D      +GL   ++ES+NL    
Sbjct: 206 SLNFGGTQNLLVIFKGLKNSTIQSLWLGTFEDMDDEDISPAVFEGLCEMSVESINLQKHY 265

Query: 288 IGDEGLVNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISDGSLRKLAGL 347
             +           L+ L+L+ T + S     L GL+ L+ + LS     +      +  
Sbjct: 266 FFNISSNTFHCFSGLQELDLTATHL-SELPSGLVGLSTLKKLVLSANKFENLCQISASNF 324

Query: 348 SSLKSLNLDA-RQITDTGLAALTSLTGLTHLDLFGARITDSGAAY--LRNFKNLRSLEIC 404
            SL  L++    +  + G   L +L  L  LDL    I  S      LRN  +L+SL + 
Sbjct: 325 PSLTHLSIKGNTKRLELGTGCLENLENLRELDLSHDDIETSDCCNLQLRNLSHLQSLNLS 384

Query: 405 GGGLTDAGVKHIKDLSSLTLLNLSQNCNLTDKTLELISGLTGLVSLNVSNSRITS 459
                    +  K+   L LL+L+               L  L  LN+S+S +  
Sbjct: 385 YNEPLSLKTEAFKECPQLELLDLAFTRLKVKDAQSPFQNLHLLKVLNLSHSLLDI 439

>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A* Length = 606

 Score =  117 bits (296), Expect = 1e-28
 Identities = 83/420 (19%), Positives = 143/420 (34%), Gaps = 40/420 (9%)

Query: 57  SSLLSVDLSGSDVTDSGLIHLKDCSNLQSLDFNFCIQISDGGLEHLRGLSNLTSLSFRRN 116
             L ++ L+ + +       L     L+ L F     IS      L     L SL    N
Sbjct: 81  HRLDTLVLTANPLIFMAETALSGPKALKHLFFIQT-GISSIDFIPLHNQKTLESLYLGSN 139

Query: 117 NAITAQGMKAFAGLINLVKLDLERC--TRIHGG-LVNLKGLMKLESLNIKWCNCITDSDM 173
           + I++  +        L  LD +      +    + +L+      SLN+   N I   + 
Sbjct: 140 H-ISSIKLPKGFPTEKLKVLDFQNNAIHYLSKEDMSSLQQA-TNLSLNLNG-NDIAGIEP 196

Query: 174 KPLSGLT----NLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACLDSLSALGS 229
                      N    Q           + ++ L   T  +++   ++ A  + L  + S
Sbjct: 197 GAFDSAVFQSLNFGGTQNLLVIFKGLKNSTIQSLWLGTFEDMDDEDISPAVFEGLCEM-S 255

Query: 230 LFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNLDSCGIG 289
           +  +NL +    +     F     L+ L+L    ++ E    L GL+ L+ L L +    
Sbjct: 256 VESINLQKHYFFNISSNTFHCFSGLQELDLTATHLS-ELPSGLVGLSTLKKLVLSANKFE 314

Query: 290 DEGLVNLTGLCNLKCLELSD-TQVGSSGLRHLSGLTNLESINLSFTGISDGSLRK--LAG 346
           +   ++ +   +L  L +   T+    G   L  L NL  ++LS   I         L  
Sbjct: 315 NLCQISASNFPSLTHLSIKGNTKRLELGTGCLENLENLRELDLSHDDIETSDCCNLQLRN 374

Query: 347 LSSLKSLNLDARQITDTGLAALTSLTGLTHLDLFGARITDSGAAYLRNFKNLRSLEICGG 406
           LS L+SLNL   +       A      L  LDL   R+    A                 
Sbjct: 375 LSHLQSLNLSYNEPLSLKTEAFKECPQLELLDLAFTRLKVKDAQSP-------------- 420

Query: 407 GLTDAGVKHIKDLSSLTLLNLSQNCNLTDKTLELISGLTGLVSLNVSNSRITSAGLRHLN 466
                     ++L  L +LNLS +  L   + +L  GL  L  LN+  +      ++  N
Sbjct: 421 ---------FQNLHLLKVLNLSHS-LLDISSEQLFDGLPALQHLNLQGNHFPKGNIQKTN 470

>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A* Length = 606

 Score =  113 bits (285), Expect = 4e-27
 Identities = 82/365 (22%), Positives = 131/365 (35%), Gaps = 16/365 (4%)

Query: 105 LSNLTSLSFRRNNAITAQGMKAFAGLINLVKLDLERC--TRIHGGLVNLKGLMKLESLNI 162
            ++   L F  N  +       F+ LINL  LDL RC    IH      +   +L++L +
Sbjct: 32  PNSTECLEFSFNV-LPTIQNTTFSRLINLTFLDLTRCQIYWIHEDT--FQSQHRLDTLVL 88

Query: 163 KWCNCITDSDMKPLSGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACLD 222
              N +       LSG   LK L    + ++      L   + L  L L    +++  L 
Sbjct: 89  TA-NPLIFMAETALSGPKALKHLFFIQTGISSIDFIPLHNQKTLESLYLGSNHISSIKLP 147

Query: 223 SLSALGSLFYLNLNRCQLSDDGCEKFSKIGSLKV--LNLGFNEITDECLVHLKGLTNLES 280
                  L  L+     +     E  S +       LNL  N+I              +S
Sbjct: 148 KGFPTEKLKVLDFQNNAIHYLSKEDMSSLQQATNLSLNLNGNDIAGIEP-GAFDSAVFQS 206

Query: 281 LNLDSCGIGDEGLVNLTG--LCNLKCLELSDTQVGSSGLRHLSGL--TNLESINLSFTGI 336
           LN             L    + +L      D            GL   ++ESINL     
Sbjct: 207 LNFGGTQNLLVIFKGLKNSTIQSLWLGTFEDMDDEDISPAVFEGLCEMSVESINLQKHYF 266

Query: 337 SDGSLRKLAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLFGARITDSGAAYLRNFK 396
            + S       S L+ L+L A  +++   + L  L+ L  L L   +  +       NF 
Sbjct: 267 FNISSNTFHCFSGLQELDLTATHLSEL-PSGLVGLSTLKKLVLSANKFENLCQISASNFP 325

Query: 397 NLRSLEICG-GGLTDAGVKHIKDLSSLTLLNLSQNC-NLTDKTLELISGLTGLVSLNVSN 454
           +L  L I G     + G   +++L +L  L+LS +    +D     +  L+ L SLN+S 
Sbjct: 326 SLTHLSIKGNTKRLELGTGCLENLENLRELDLSHDDIETSDCCNLQLRNLSHLQSLNLSY 385

Query: 455 SRITS 459
           +   S
Sbjct: 386 NEPLS 390

>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A* Length = 606

 Score =  108 bits (271), Expect = 2e-25
 Identities = 80/424 (18%), Positives = 144/424 (33%), Gaps = 19/424 (4%)

Query: 20  LTEVSLEAFRDCALQDLCLGQYPGVNDKWMDVIASQGSSLLSVDLSGSDVTDSGLIHLKD 79
           +  +   AF     Q L  G    +   +  +  S   SL        D  D      + 
Sbjct: 191 IAGIEPGAFDSAVFQSLNFGGTQNLLVIFKGLKNSTIQSLWLGTFEDMDDEDISPAVFEG 250

Query: 80  CS--NLQSLDFNFCIQISDGGLEHLRGLSNLTSLSFRRNNAITAQGMKAFAGLINLVKLD 137
               +++S++        +         S L  L     + ++ +      GL  L KL 
Sbjct: 251 LCEMSVESINLQKH-YFFNISSNTFHCFSGLQELDLTATH-LS-ELPSGLVGLSTLKKLV 307

Query: 138 LERC--TRIHGGLVNLKGLMKLESLNIKWCNCITDSDMKPLSGLTNLKSLQISCSKVTDS 195
           L       +     +      L  L+IK      +     L  L NL+ L +S   +  S
Sbjct: 308 LSANKFENLCQI--SASNFPSLTHLSIKGNTKRLELGTGCLENLENLRELDLSHDDIETS 365

Query: 196 GIAY--LKGLQKLTLLNLEGCPVTAACLDSLSALGSLFYLNLNRCQLSD-DGCEKFSKIG 252
                 L+ L  L  LNL      +   ++      L  L+L   +L   D    F  + 
Sbjct: 366 DCCNLQLRNLSHLQSLNLSYNEPLSLKTEAFKECPQLELLDLAFTRLKVKDAQSPFQNLH 425

Query: 253 SLKVLNLGFNEITDECLVHLKGLTNLESLNLDSCGIGDEGLV---NLTGLCNLKCLELSD 309
            LKVLNL  + +         GL  L+ LNL         +    +L  L  L+ L LS 
Sbjct: 426 LLKVLNLSHSLLDISSEQLFDGLPALQHLNLQGNHFPKGNIQKTNSLQTLGRLEILVLSF 485

Query: 310 TQVGSSGLRHLSGLTNLESINLSFTGISDGSLRKLAGLSSLKSLNLDARQITDTGLAALT 369
             + S      + L  +  ++LS   ++  S+  L+ L  +  LNL +  I+    + L 
Sbjct: 486 CDLSSIDQHAFTSLKMMNHVDLSHNRLTSSSIEALSHLKGIY-LNLASNHISIILPSLLP 544

Query: 370 SLTGLTHLDLFGARIT-DSGAAYLRNFKNLRSLEICGGGLTDAGVKHIKDLSSLTLLNLS 428
            L+    ++L    +       Y   +      ++      D   ++   L  + L +++
Sbjct: 545 ILSQQRTINLRQNPLDCTCSNIYFLEWYKENMQKL--EDTEDTLCENPPLLRGVRLSDVT 602

Query: 429 QNCN 432
            +C+
Sbjct: 603 LSCS 606

>2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens} Length = 477

 Score =  117 bits (295), Expect = 9e-29
 Identities = 75/303 (24%), Positives = 115/303 (37%), Gaps = 7/303 (2%)

Query: 81  SNLQSLDFNFCIQISDGGLEHLRGLSNLTSLSFRRNNAITAQGMKAFAGLINLVKLDLER 140
           +  + LD     +I     +      +L  L    N  ++A    AF  L NL  L L  
Sbjct: 32  TETRLLDLGKN-RIKTLNQDEFASFPHLEELELNENI-VSAVEPGAFNNLFNLRTLGLRS 89

Query: 141 C--TRIHGGLVNLKGLMKLESLNIKWCNCITDSDMKPLSGLTNLKSLQISCSKVTDSGIA 198
                I  G+    GL  L  L+I   N I          L NLKSL++  + +      
Sbjct: 90  NRLKLIPLGV--FTGLSNLTKLDISE-NKIVILLDYMFQDLYNLKSLEVGDNDLVYISHR 146

Query: 199 YLKGLQKLTLLNLEGCPVTAACLDSLSALGSLFYLNLNRCQLSDDGCEKFSKIGSLKVLN 258
              GL  L  L LE C +T+   ++LS L  L  L L    ++      F ++  LKVL 
Sbjct: 147 AFSGLNSLEQLTLEKCNLTSIPTEALSHLHGLIVLRLRHLNINAIRDYSFKRLYRLKVLE 206

Query: 259 LGFNEITDECLVHLKGLTNLESLNLDSCGIGDEGLVNLTGLCNLKCLELSDTQVGSSGLR 318
           +      D    +     NL SL++  C +     + +  L  L+ L LS   + +    
Sbjct: 207 ISHWPYLDTMTPNCLYGLNLTSLSITHCNLTAVPYLAVRHLVYLRFLNLSYNPISTIEGS 266

Query: 319 HLSGLTNLESINLSFTGISDGSLRKLAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLD 378
            L  L  L+ I L    ++        GL+ L+ LN+   Q+T    +   S+  L  L 
Sbjct: 267 MLHELLRLQEIQLVGGQLAVVEPYAFRGLNYLRVLNVSGNQLTTLEESVFHSVGNLETLI 326

Query: 379 LFG 381
           L  
Sbjct: 327 LDS 329

>2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens} Length = 477

 Score =  113 bits (285), Expect = 2e-27
 Identities = 60/289 (20%), Positives = 112/289 (38%), Gaps = 1/289 (0%)

Query: 166 NCITDSDMKPLSGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACLDSLS 225
           N I   +    +   +L+ L+++ + V+         L  L  L L    +    L   +
Sbjct: 42  NRIKTLNQDEFASFPHLEELELNENIVSAVEPGAFNNLFNLRTLGLRSNRLKLIPLGVFT 101

Query: 226 ALGSLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNLDS 285
            L +L  L+++  ++       F  + +LK L +G N++         GL +LE L L+ 
Sbjct: 102 GLSNLTKLDISENKIVILLDYMFQDLYNLKSLEVGDNDLVYISHRAFSGLNSLEQLTLEK 161

Query: 286 CGIGDEGLVNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISDGSLRKLA 345
           C +       L+ L  L  L L    + +        L  L+ + +S     D       
Sbjct: 162 CNLTSIPTEALSHLHGLIVLRLRHLNINAIRDYSFKRLYRLKVLEISHWPYLDTMTPNCL 221

Query: 346 GLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLFGARITDSGAAYLRNFKNLRSLEICG 405
              +L SL++    +T     A+  L  L  L+L    I+    + L     L+ +++ G
Sbjct: 222 YGLNLTSLSITHCNLTAVPYLAVRHLVYLRFLNLSYNPISTIEGSMLHELLRLQEIQLVG 281

Query: 406 GGLTDAGVKHIKDLSSLTLLNLSQNCNLTDKTLELISGLTGLVSLNVSN 454
           G L        + L+ L +LN+S N  LT     +   +  L +L + +
Sbjct: 282 GQLAVVEPYAFRGLNYLRVLNVSGN-QLTTLEESVFHSVGNLETLILDS 329

>2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens} Length = 477

 Score =  103 bits (258), Expect = 5e-24
 Identities = 60/280 (21%), Positives = 101/280 (36%), Gaps = 1/280 (0%)

Query: 180 TNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACLDSLSALGSLFYLNLNRCQ 239
           T  + L +  +++             L  L L    V+A    + + L +L  L L   +
Sbjct: 32  TETRLLDLGKNRIKTLNQDEFASFPHLEELELNENIVSAVEPGAFNNLFNLRTLGLRSNR 91

Query: 240 LSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNLDSCGIGDEGLVNLTGL 299
           L       F+ + +L  L++  N+I        + L NL+SL +    +        +GL
Sbjct: 92  LKLIPLGVFTGLSNLTKLDISENKIVILLDYMFQDLYNLKSLEVGDNDLVYISHRAFSGL 151

Query: 300 CNLKCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISDGSLRKLAGLSSLKSLNLDARQ 359
            +L+ L L    + S     LS L  L  + L    I+         L  LK L +    
Sbjct: 152 NSLEQLTLEKCNLTSIPTEALSHLHGLIVLRLRHLNINAIRDYSFKRLYRLKVLEISHWP 211

Query: 360 ITDTGLAALTSLTGLTHLDLFGARITDSGAAYLRNFKNLRSLEICGGGLTDAGVKHIKDL 419
             DT          LT L +    +T      +R+   LR L +    ++      + +L
Sbjct: 212 YLDTMTPNCLYGLNLTSLSITHCNLTAVPYLAVRHLVYLRFLNLSYNPISTIEGSMLHEL 271

Query: 420 SSLTLLNLSQNCNLTDKTLELISGLTGLVSLNVSNSRITS 459
             L  + L     L         GL  L  LNVS +++T+
Sbjct: 272 LRLQEIQLVGG-QLAVVEPYAFRGLNYLRVLNVSGNQLTT 310

>2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens} Length = 477

 Score = 72.8 bits (179), Expect = 5e-14
 Identities = 41/173 (23%), Positives = 72/173 (41%), Gaps = 7/173 (4%)

Query: 301 NLKCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISDGSLRKLAGLSSLKSLNLDARQI 360
             + L+L   ++ +      +   +LE + L+   +S         L +L++L L + ++
Sbjct: 33  ETRLLDLGKNRIKTLNQDEFASFPHLEELELNENIVSAVEPGAFNNLFNLRTLGLRSNRL 92

Query: 361 TDTGLAALTSLTGLTHLDLFGARITDSGAAYLRNFKNLRSLEICGGGLTDAGVKHIKDLS 420
               L   T L+ LT LD+   +I        ++  NL+SLE+    L     +    L+
Sbjct: 93  KLIPLGVFTGLSNLTKLDISENKIVILLDYMFQDLYNLKSLEVGDNDLVYISHRAFSGLN 152

Query: 421 SLTLLNLSQNCNLTDKTLELISGLTGLVSLNVSNSRITS------AGLRHLNH 467
           SL  L L +  NLT    E +S L GL+ L + +  I +        L  L  
Sbjct: 153 SLEQLTLEKC-NLTSIPTEALSHLHGLIVLRLRHLNINAIRDYSFKRLYRLKV 204

>2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens} Length = 477

 Score = 65.9 bits (161), Expect = 1e-11
 Identities = 46/188 (24%), Positives = 77/188 (40%), Gaps = 3/188 (1%)

Query: 81  SNLQSLDFNFCIQISDGGLEHLRGLSNLTSLSFRRNNAITAQGMKAFAGLINLVKLDLER 140
           ++L+ L    C  ++    E L  L  L  L  R  N I A    +F  L  L  L++  
Sbjct: 152 NSLEQLTLEKC-NLTSIPTEALSHLHGLIVLRLRHLN-INAIRDYSFKRLYRLKVLEISH 209

Query: 141 CTRIHGGLVNLKGLMKLESLNIKWCNCITDSDMKPLSGLTNLKSLQISCSKVTDSGIAYL 200
              +     N    + L SL+I  CN +T      +  L  L+ L +S + ++    + L
Sbjct: 210 WPYLDTMTPNCLYGLNLTSLSITHCN-LTAVPYLAVRHLVYLRFLNLSYNPISTIEGSML 268

Query: 201 KGLQKLTLLNLEGCPVTAACLDSLSALGSLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLG 260
             L +L  + L G  +      +   L  L  LN++  QL+      F  +G+L+ L L 
Sbjct: 269 HELLRLQEIQLVGGQLAVVEPYAFRGLNYLRVLNVSGNQLTTLEESVFHSVGNLETLILD 328

Query: 261 FNEITDEC 268
            N +  +C
Sbjct: 329 SNPLACDC 336

>2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens} Length = 477

 Score = 52.0 bits (125), Expect = 2e-07
 Identities = 28/126 (22%), Positives = 48/126 (38%), Gaps = 7/126 (5%)

Query: 348 SSLKSLNLDARQITDTGLAALTSLTGLTHLDLFGARITDSGAAYLRNFKNLRSLEICGGG 407
           +  + L+L   +I         S   L  L+L    ++        N  NLR+L +    
Sbjct: 32  TETRLLDLGKNRIKTLNQDEFASFPHLEELELNENIVSAVEPGAFNNLFNLRTLGLRSNR 91

Query: 408 LTDAGVKHIKDLSSLTLLNLSQNCNLTDKTLELISGLTGLVSLNVSNSRITS------AG 461
           L    +     LS+LT L++S+N  +      +   L  L SL V ++ +        +G
Sbjct: 92  LKLIPLGVFTGLSNLTKLDISEN-KIVILLDYMFQDLYNLKSLEVGDNDLVYISHRAFSG 150

Query: 462 LRHLNH 467
           L  L  
Sbjct: 151 LNSLEQ 156

>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens} Length = 844

 Score =  119 bits (299), Expect = 1e-28
 Identities = 87/433 (20%), Positives = 156/433 (36%), Gaps = 41/433 (9%)

Query: 57  SSLLSVDLSGSDVTDSGLIH--LKDCSNLQSLDFNFCIQISDGGLEHLRGLSNLTSLSFR 114
             L  + L    ++D+ L     ++   L  LD +     S         L++L S+ F 
Sbjct: 97  FHLFELRLYFCGLSDAVLKDGYFRNLKALTRLDLSKNQIRSLYLHPSFGKLNSLKSIDFS 156

Query: 115 RNNAITAQGMKAFAGL--INLVKLDL------ERCTRIHGGLVNLKGLMKLESLNIKW-- 164
            +N I          L    L    L       R +   G  +N    M LE L++    
Sbjct: 157 -SNQIFLVCEHELEPLQGKTLSFFSLAANSLYSRVSVDWGKCMNPFRNMVLEILDVSGNG 215

Query: 165 ---------CNCITDSDMKPLSGLTNLKSLQISCSKVTDSGIAYLKGLQKLTL--LNLEG 213
                     N I+ S    L    ++         + D       GL + ++  L+L  
Sbjct: 216 WTVDITGNFSNAISKSQAFSLILAHHIMGAGFGFHNIKDPDQNTFAGLARSSVRHLDLSH 275

Query: 214 CPVTAACLDSLSALGSLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLK 273
             V +        L  L  LNL   +++    E F  + +L+VLNL +N + +    +  
Sbjct: 276 GFVFSLNSRVFETLKDLKVLNLAYNKINKIADEAFYGLDNLQVLNLSYNLLGELYSSNFY 335

Query: 274 GLTNLESLNLDSCGIGDEGLVNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSF 333
           GL  +  ++L    I          L  L+ L+L D       L  +  + ++  I LS 
Sbjct: 336 GLPKVAYIDLQKNHIAIIQDQTFKFLEKLQTLDLRDNA-----LTTIHFIPSIPDIFLSG 390

Query: 334 TGISDGSLRKLAGLSSLKSLNLDARQITDTGLAA-LTSLTGLTHLDLFGARITD-SGAAY 391
             +   +L K+    +   ++L   ++ +  +   L  +  L  L L   R +  SG   
Sbjct: 391 NKLV--TLPKIN--LTANLIHLSENRLENLDILYFLLRVPHLQILILNQNRFSSCSGDQT 446

Query: 392 LRNFKNLRSLEICGGGLTDAGVKHI-----KDLSSLTLLNLSQNCNLTDKTLELISGLTG 446
                +L  L +    L  A    +     + LS L +L L+ +  L      + S LT 
Sbjct: 447 PSENPSLEQLFLGENMLQLAWETELCWDVFEGLSHLQVLYLN-HNYLNSLPPGVFSHLTA 505

Query: 447 LVSLNVSNSRITS 459
           L  L+++++R+T 
Sbjct: 506 LRGLSLNSNRLTV 518

>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens} Length = 844

 Score =  115 bits (290), Expect = 1e-27
 Identities = 81/429 (18%), Positives = 149/429 (34%), Gaps = 38/429 (8%)

Query: 57  SSLLSVDLSGSDVTDSGLIHLKDCSNLQSLDFNFCIQISDGGLEHLRGLSNLTSLSFRRN 116
           ++   + LS + +             LQ L+            E  R L NL  L    +
Sbjct: 24  NTTERLLLSFNYIRTVTASSFPFLEQLQLLELGSQYTPLTIDKEAFRNLPNLRILDLGSS 83

Query: 117 NAITAQGMKAFAGLINLVKLDLERCTRIHGGLVN---LKGLMKLESLNIKWCNCITDSDM 173
             I      AF GL +L +L L  C  +   ++     + L  L  L++      +    
Sbjct: 84  K-IYFLHPDAFQGLFHLFELRLYFC-GLSDAVLKDGYFRNLKALTRLDLSKNQIRSLYLH 141

Query: 174 KPLSGLTNLKSLQISCSKVTDSGIAYLKGLQKLTL--LNLEGCPVTAACLDSLSALGSLF 231
                L +LKS+  S +++       L+ LQ  TL   +L    + +          + F
Sbjct: 142 PSFGKLNSLKSIDFSSNQIFLVCEHELEPLQGKTLSFFSLAANSLYSRVSVDWGKCMNPF 201

Query: 232 ------YLNLNRCQLSDDGCEKFSKIGS------------LKVLNLGFNEITDECLVHLK 273
                  L+++    + D    FS   S            +     GF+ I D       
Sbjct: 202 RNMVLEILDVSGNGWTVDITGNFSNAISKSQAFSLILAHHIMGAGFGFHNIKDPDQNTFA 261

Query: 274 GL--TNLESLNLDSCGIGDEGLVNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINL 331
           GL  +++  L+L    +          L +LK L L+  ++         GL NL+ +NL
Sbjct: 262 GLARSSVRHLDLSHGFVFSLNSRVFETLKDLKVLNLAYNKINKIADEAFYGLDNLQVLNL 321

Query: 332 SFTGISDGSLRKLAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLFGARITDSGAAY 391
           S+  + +       GL  +  ++L    I          L  L  LDL    +T      
Sbjct: 322 SYNLLGELYSSNFYGLPKVAYIDLQKNHIAIIQDQTFKFLEKLQTLDLRDNALTT----- 376

Query: 392 LRNFKNLRSLEICGGGLTDAGVKHIKDLS-SLTLLNLSQNCNLTDKTLELISGLTGLVSL 450
           +    ++  + + G  L       +  ++ +  L++LS+N       L  +  +  L  L
Sbjct: 377 IHFIPSIPDIFLSGNKLV-----TLPKINLTANLIHLSENRLENLDILYFLLRVPHLQIL 431

Query: 451 NVSNSRITS 459
            ++ +R +S
Sbjct: 432 ILNQNRFSS 440

>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens} Length = 844

 Score =  114 bits (286), Expect = 4e-27
 Identities = 71/409 (17%), Positives = 138/409 (33%), Gaps = 44/409 (10%)

Query: 80  CSNLQSLDFNFCIQISDGGLEHL-RGLSNLTSLSFRRNNAITAQGMKAFAGLINLVKLDL 138
           CS    + F          L  + + L+    L    N  I      +F  L  L  L+L
Sbjct: 2   CSFDGRIAFY-----RFCNLTQVPQVLNTTERLLLSFNY-IRTVTASSFPFLEQLQLLEL 55

Query: 139 ERC---TRIHGGLVNLKGLMKLESLNIKWCNCITDSDMKPLSGLTNLKSLQISCSKVTDS 195
                   I       + L  L  L++   + I         GL +L  L++    ++D+
Sbjct: 56  GSQYTPLTIDKEA--FRNLPNLRILDLGS-SKIYFLHPDAFQGLFHLFELRLYFCGLSDA 112

Query: 196 GI--AYLKGLQKLTLLNLEGCPVTAACL-DSLSALGSLFYLNLNRCQLSDDGCEKFSKIG 252
            +   Y + L+ LT L+L    + +  L  S   L SL  ++ +  Q+      +   + 
Sbjct: 113 VLKDGYFRNLKALTRLDLSKNQIRSLYLHPSFGKLNSLKSIDFSSNQIFLVCEHELEPLQ 172

Query: 253 --SLKVLNLGFNEITDECLVHLKGLTN------LESLNLDSCGIGDE------------G 292
             +L   +L  N +     V      N      LE L++   G   +             
Sbjct: 173 GKTLSFFSLAANSLYSRVSVDWGKCMNPFRNMVLEILDVSGNGWTVDITGNFSNAISKSQ 232

Query: 293 LVNLTGLCNLKCLELSDTQVGSSGLRHLSGL--TNLESINLSFTGISDGSLRKLAGLSSL 350
             +L    ++         +        +GL  +++  ++LS   +   + R    L  L
Sbjct: 233 AFSLILAHHIMGAGFGFHNIKDPDQNTFAGLARSSVRHLDLSHGFVFSLNSRVFETLKDL 292

Query: 351 KSLNLDARQITDTGLAALTSLTGLTHLDLFGARITDSGAAYLRNFKNLRSLEICGGGLTD 410
           K LNL   +I      A   L  L  L+L    + +  ++       +  +++    +  
Sbjct: 293 KVLNLAYNKINKIADEAFYGLDNLQVLNLSYNLLGELYSSNFYGLPKVAYIDLQKNHIAI 352

Query: 411 AGVKHIKDLSSLTLLNLSQNCNLTDKTLELISGLTGLVSLNVSNSRITS 459
              +  K L  L  L+L  N       L  I  +  +  + +S +++ +
Sbjct: 353 IQDQTFKFLEKLQTLDLRDNA------LTTIHFIPSIPDIFLSGNKLVT 395

>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens} Length = 844

 Score =  106 bits (267), Expect = 9e-25
 Identities = 77/376 (20%), Positives = 133/376 (35%), Gaps = 28/376 (7%)

Query: 75  IHLKDCSNLQSLDFNFCIQISDGGLEHLRGLSNLTSLSFRRNNAITAQGMKAFAGL--IN 132
           + +        +  NF   IS      L    ++    F  +N I       FAGL   +
Sbjct: 209 LDVSGNGWTVDITGNFSNAISKSQAFSLILAHHIMGAGFGFHN-IKDPDQNTFAGLARSS 267

Query: 133 LVKLDLERC--TRIHGGLVNLKGLMKLESLNIKWCNCITDSDMKPLSGLTNLKSLQISCS 190
           +  LDL       ++  +   + L  L+ LN+ + N I     +   GL NL+ L +S +
Sbjct: 268 VRHLDLSHGFVFSLNSRV--FETLKDLKVLNLAY-NKINKIADEAFYGLDNLQVLNLSYN 324

Query: 191 KVTDSGIAYLKGLQKLTLLNLEGCPVTAACLDSLSALGSLFYLNLNRCQLSDDGCEKFSK 250
            + +   +   GL K+  ++L+   +      +   L  L  L+L    L+         
Sbjct: 325 LLGELYSSNFYGLPKVAYIDLQKNHIAIIQDQTFKFLEKLQTLDLRDNALTT-----IHF 379

Query: 251 IGSLKVLNLGFNEITDECLVHLKGLT-NLESLNLDSCGI-GDEGLVNLTGLCNLKCLELS 308
           I S+  + L  N++       L  +      ++L    +   + L  L  + +L+ L L+
Sbjct: 380 IPSIPDIFLSGNKLV-----TLPKINLTANLIHLSENRLENLDILYFLLRVPHLQILILN 434

Query: 309 DTQVGSSGLRHL-SGLTNLESINLSFTGISDGSLRKL-----AGLSSLKSLNLDARQITD 362
             +  S       S   +LE + L    +      +L      GLS L+ L L+   +  
Sbjct: 435 QNRFSSCSGDQTPSENPSLEQLFLGENMLQLAWETELCWDVFEGLSHLQVLYLNHNYLNS 494

Query: 363 TGLAALTSLTGLTHLDLFGARITDSGAAYLRNFKNLRSLEICGGGLTDAGVKHIKDLSSL 422
                 + LT L  L L   R+T      L    NL  L+I    L          LS L
Sbjct: 495 LPPGVFSHLTALRGLSLNSNRLTVLSHNDL--PANLEILDISRNQLLAPNPDVFVSLSVL 552

Query: 423 TLLNLSQNCNLTDKTL 438
            + +    C     T 
Sbjct: 553 DITHNKFICECELSTF 568

>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens} Length = 844

 Score = 76.0 bits (187), Expect = 8e-15
 Identities = 49/251 (19%), Positives = 91/251 (36%), Gaps = 27/251 (10%)

Query: 57  SSLLSVDLSGSDVTDSGLIHLKDCSNLQSLDFNFCIQISDGGLEHLRGLSNLTSLSFRRN 116
             L  ++L+ + +            NLQ L+ ++   + +    +  GL  +  +  ++N
Sbjct: 290 KDLKVLNLAYNKINKIADEAFYGLDNLQVLNLSYN-LLGELYSSNFYGLPKVAYIDLQKN 348

Query: 117 NAITAQGMKAFAGLINLVKLDLERC--TRIHGGLVNLKGL--------------MKLESL 160
           + I     + F  L  L  LDL     T IH  + ++  +              +    +
Sbjct: 349 H-IAIIQDQTFKFLEKLQTLDLRDNALTTIHF-IPSIPDIFLSGNKLVTLPKINLTANLI 406

Query: 161 NIKWCNCITDSDMKPLSGLTNLKSLQISCSKVTD-SGIAYLKGLQKLTLLNLEGC----- 214
           ++          +  L  + +L+ L ++ ++ +  SG         L  L L        
Sbjct: 407 HLSENRLENLDILYFLLRVPHLQILILNQNRFSSCSGDQTPSENPSLEQLFLGENMLQLA 466

Query: 215 PVTAACLDSLSALGSLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKG 274
             T  C D    L  L  L LN   L+      FS + +L+ L+L  N +T   L H   
Sbjct: 467 WETELCWDVFEGLSHLQVLYLNHNYLNSLPPGVFSHLTALRGLSLNSNRLT--VLSHNDL 524

Query: 275 LTNLESLNLDS 285
             NLE L++  
Sbjct: 525 PANLEILDISR 535

>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens} Length = 844

 Score = 52.9 bits (127), Expect = 1e-07
 Identities = 30/135 (22%), Positives = 48/135 (35%), Gaps = 8/135 (5%)

Query: 336 ISDGSLRKL----AGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLFGARITDS-GAA 390
           I+      L      L++ + L L    I     ++   L  L  L+L       +    
Sbjct: 8   IAFYRFCNLTQVPQVLNTTERLLLSFNYIRTVTASSFPFLEQLQLLELGSQYTPLTIDKE 67

Query: 391 YLRNFKNLRSLEICGGGLTDAGVKHIKDLSSLTLLNLSQNCNLTDKTLE--LISGLTGLV 448
             RN  NLR L++    +        + L  L  L L     L+D  L+      L  L 
Sbjct: 68  AFRNLPNLRILDLGSSKIYFLHPDAFQGLFHLFELRLYFC-GLSDAVLKDGYFRNLKALT 126

Query: 449 SLNVSNSRITSAGLR 463
            L++S ++I S  L 
Sbjct: 127 RLDLSKNQIRSLYLH 141

>2ast_B S-phase kinase-associated protein 2; SCF-substrate complex, LRR, cell cycle, protein turnover COM ligase-ligase inhibitor complex; HET: TPO; 2.30A {Homo sapiens} SCOP: a.158.1.1 c.10.1.3 PDB: 2ass_B 1fqv_A* 1fs2_A Length = 336

 Score =  110 bits (277), Expect = 3e-27
 Identities = 60/305 (19%), Positives = 104/305 (34%), Gaps = 19/305 (6%)

Query: 138 LERCTRIHGGLVNLKGLMKLESLNIKWCNCITDSDMKPLSGLTNLKSLQI----SCSKVT 193
           L     +    V  K   +L S    W                 L S  +          
Sbjct: 24  LCLPELLKVSGVC-KRWYRLASDESLWQTLDLTGKNLHPDVTGRLLSQGVIAFRCPRSFM 82

Query: 194 DSGIAYLKGLQKLTLLNLEGCPVTAACLDSL-SALGSLFYLNLNRCQLSDDGCEKFSKIG 252
           D  +A      ++  ++L    +  + L  + S    L  L+L   +LSD      +K  
Sbjct: 83  DQPLAEHFSPFRVQHMDLSNSVIEVSTLHGILSQCSKLQNLSLEGLRLSDPIVNTLAKNS 142

Query: 253 SLKVLNL-GFNEITDECLVHL-KGLTNLESLNLDSC-GIGDEGLVNLTGLC--NLKCLEL 307
           +L  LNL G +  ++  L  L    + L+ LNL  C    ++ +          +  L L
Sbjct: 143 NLVRLNLSGCSGFSEFALQTLLSSCSRLDELNLSWCFDFTEKHVQVAVAHVSETITQLNL 202

Query: 308 SD--TQVGSSGLRHLS-GLTNLESINLSF-TGISDGSLRKLAGLSSLKSLNLDA-RQITD 362
           S     +  S L  L     NL  ++LS    + +   ++   L+ L+ L+L     I  
Sbjct: 203 SGYRKNLQKSDLSTLVRRCPNLVHLDLSDSVMLKNDCFQEFFQLNYLQHLSLSRCYDIIP 262

Query: 363 TGLAALTSLTGLTHLDLFGARITDSGAAYLRNFKNLRSLEICGGGLTDAGVKHIKDLSSL 422
             L  L  +  L  L +FG  + D     L+  + L  L+I     T      I +  + 
Sbjct: 263 ETLLELGEIPTLKTLQVFGI-VPDGTLQLLK--EALPHLQINCSHFTTIARPTIGNKKNQ 319

Query: 423 TLLNL 427
            +  +
Sbjct: 320 EIWGI 324

>2ast_B S-phase kinase-associated protein 2; SCF-substrate complex, LRR, cell cycle, protein turnover COM ligase-ligase inhibitor complex; HET: TPO; 2.30A {Homo sapiens} SCOP: a.158.1.1 c.10.1.3 PDB: 2ass_B 1fqv_A* 1fs2_A Length = 336

 Score =  110 bits (276), Expect = 4e-27
 Identities = 49/266 (18%), Positives = 95/266 (35%), Gaps = 11/266 (4%)

Query: 1   MLPRDISQQIFNELVYSRCLTEVSLEAFRDCALQDLCLGQYPGVNDKWMDVIASQGSSLL 60
           +  R +SQ +         + +   E F    +Q + L     +    +  I SQ S L 
Sbjct: 63  VTGRLLSQGVIAFRCPRSFMDQPLAEHFSPFRVQHMDLS-NSVIEVSTLHGILSQCSKLQ 121

Query: 61  SVDLSGSDVTDSGLIHLKDCSNLQSLDFNFCIQISDGGLEHL-RGLSNLTSLSFRRNNAI 119
           ++ L G  ++D  +  L   SNL  L+ + C   S+  L+ L    S L  L+       
Sbjct: 122 NLSLEGLRLSDPIVNTLAKNSNLVRLNLSGCSGFSEFALQTLLSSCSRLDELNLSWCFDF 181

Query: 120 TAQGMKAFA--GLINLVKLDLERCTRI--HGGLVNL-KGLMKLESLNIKWCNCITDSDMK 174
           T + ++         + +L+L    +      L  L +    L  L++     + +   +
Sbjct: 182 TEKHVQVAVAHVSETITQLNLSGYRKNLQKSDLSTLVRRCPNLVHLDLSDSVMLKNDCFQ 241

Query: 175 PLSGLTNLKSLQIS-CSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACLDSLSALGSLFYL 233
               L  L+ L +S C  +    +  L  +  L  L + G  V    L  L    +L +L
Sbjct: 242 EFFQLNYLQHLSLSRCYDIIPETLLELGEIPTLKTLQVFGI-VPDGTLQLLKE--ALPHL 298

Query: 234 NLNRCQLSDDGCEKFSKIGSLKVLNL 259
            +N    +           + ++  +
Sbjct: 299 QINCSHFTTIARPTIGNKKNQEIWGI 324

>2ast_B S-phase kinase-associated protein 2; SCF-substrate complex, LRR, cell cycle, protein turnover COM ligase-ligase inhibitor complex; HET: TPO; 2.30A {Homo sapiens} SCOP: a.158.1.1 c.10.1.3 PDB: 2ass_B 1fqv_A* 1fs2_A Length = 336

 Score =  106 bits (267), Expect = 7e-26
 Identities = 53/243 (21%), Positives = 96/243 (39%), Gaps = 13/243 (5%)

Query: 233 LNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNLDSCGIGDEG 292
           L+L    L  D   +    G +           D+ L        ++ ++L +  I    
Sbjct: 52  LDLTGKNLHPDVTGRLLSQGVIAFRCPRS--FMDQPLAEHFSPFRVQHMDLSNSVIEVST 109

Query: 293 LVNLTGLC-NLKCLELSDTQVGSSGLRHLSGLTNLESINLSF-TGISDGSLRKLA-GLSS 349
           L  +   C  L+ L L   ++    +  L+  +NL  +NLS  +G S+ +L+ L    S 
Sbjct: 110 LHGILSQCSKLQNLSLEGLRLSDPIVNTLAKNSNLVRLNLSGCSGFSEFALQTLLSSCSR 169

Query: 350 LKSLNL-DARQITDTGLAALTS--LTGLTHLDLFG--ARITDSGAAYL-RNFKNLRSLEI 403
           L  LNL      T+  +    +     +T L+L G    +  S  + L R   NL  L++
Sbjct: 170 LDELNLSWCFDFTEKHVQVAVAHVSETITQLNLSGYRKNLQKSDLSTLVRRCPNLVHLDL 229

Query: 404 CG-GGLTDAGVKHIKDLSSLTLLNLSQNCNLTDKTLELISGLTGLVSLNVSNSRITSAGL 462
                L +   +    L+ L  L+LS+  ++  +TL  +  +  L +L V    +    L
Sbjct: 230 SDSVMLKNDCFQEFFQLNYLQHLSLSRCYDIIPETLLELGEIPTLKTLQVFGI-VPDGTL 288

Query: 463 RHL 465
           + L
Sbjct: 289 QLL 291

>2ast_B S-phase kinase-associated protein 2; SCF-substrate complex, LRR, cell cycle, protein turnover COM ligase-ligase inhibitor complex; HET: TPO; 2.30A {Homo sapiens} SCOP: a.158.1.1 c.10.1.3 PDB: 2ass_B 1fqv_A* 1fs2_A Length = 336

 Score = 96.5 bits (240), Expect = 3e-22
 Identities = 52/333 (15%), Positives = 100/333 (30%), Gaps = 58/333 (17%)

Query: 4   RDISQQIFNELVYSRCLTEVSLEAFRDCALQDLCLGQYPGVNDKWMDVIASQGSSLLSVD 63
             ++               +  +       Q +   + P                +  +D
Sbjct: 40  YRLASDESLWQTLDLTGKNLHPDVTGRLLSQGVIAFRCPRSFMDQPLAEHFSPFRVQHMD 99

Query: 64  LSGSDVTDSGLI-HLKDCSNLQSLDFNFCIQISDGGLEHLRGLSNLTSLSFRRNNAITAQ 122
           LS S +  S L   L  CS LQ+L      ++SD  +  L   SNL  L+    +  +  
Sbjct: 100 LSNSVIEVSTLHGILSQCSKLQNLSLEGL-RLSDPIVNTLAKNSNLVRLNLSGCSGFSEF 158

Query: 123 GMKAFAGLINLVKLDLERCTRIHGGLVNLKGLMKLESLNIKWCNCITDSDMKPL--SGLT 180
            ++                              +L+ LN+ WC   T+  ++        
Sbjct: 159 ALQTLL-----------------------SSCSRLDELNLSWCFDFTEKHVQVAVAHVSE 195

Query: 181 NLKSLQIS--CSKVTDSGIAYL-KGLQKLTLLNLEGCP-VTAACLDSLSALGSLFYLNLN 236
            +  L +S     +  S ++ L +    L  L+L     +   C      L  L +L+L+
Sbjct: 196 TITQLNLSGYRKNLQKSDLSTLVRRCPNLVHLDLSDSVMLKNDCFQEFFQLNYLQHLSLS 255

Query: 237 RCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNLDSCGIGDEGLVNL 296
           RC                        +I  E L+ L  +  L++L +    + D  L  L
Sbjct: 256 RC-----------------------YDIIPETLLELGEIPTLKTLQVFGI-VPDGTLQLL 291

Query: 297 TGLC---NLKCLELSDTQVGSSGLRHLSGLTNL 326
                   + C   +     + G +    +  +
Sbjct: 292 KEALPHLQINCSHFTTIARPTIGNKKNQEIWGI 324

>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A* Length = 606

 Score =  113 bits (286), Expect = 3e-27
 Identities = 78/420 (18%), Positives = 142/420 (33%), Gaps = 29/420 (6%)

Query: 57  SSLLSVDLSGSDVTDSGLIHLKDCSNLQSLDFNFCIQISDGGLEHLRGLSNLTSLSFRRN 116
             L ++ L+G+ +           ++L++L      +++      +  L  L  L+   N
Sbjct: 80  HHLSNLILTGNPIQSFSPGSFSGLTSLENLVAVET-KLASLESFPIGQLITLKKLNVAHN 138

Query: 117 NAITAQGMKAFAGLINLVKLDLERC--TRIHGG-LVNLKGL-MKLESLNIKWCNCITDSD 172
              + +    F+ L NLV +DL       I    L  L+       SL++     I    
Sbjct: 139 FIHSCKLPAYFSNLTNLVHVDLSYNYIQTITVNDLQFLRENPQVNLSLDMSLNP-IDFIQ 197

Query: 173 MKPLSGLTNLKSLQISC----SKVTDSGIAYLKGLQKLTLLNLEGCPVTAACLDSLSALG 228
            +   G+  L  L +      S +  + +  L GL    L+  E        +   S + 
Sbjct: 198 DQAFQGI-KLHELTLRGNFNSSNIMKTCLQNLAGLHVHRLILGEFKDERNLEIFEPSIME 256

Query: 229 SLF-----YLNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNL 283
            L         L       D   KF  + ++  ++L    I    L  +      +SL++
Sbjct: 257 GLCDVTIDEFRLTYTNDFSDDIVKFHCLANVSAMSLAGVSIKY--LEDVPKHFKWQSLSI 314

Query: 284 DSCGIGDEGLVNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLS---FTGISDGS 340
             C +          L  LK L L+  +   S       L +L  ++LS    +     S
Sbjct: 315 IRCQLKQ---FPTLDLPFLKSLTLTMNK--GSISFKKVALPSLSYLDLSRNALSFSGCCS 369

Query: 341 LRKLAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLFGARITDSGAAY-LRNFKNLR 399
              L G +SL+ L+L          A    L  L HLD   + +          + + L 
Sbjct: 370 YSDL-GTNSLRHLDLSFNGAIIMS-ANFMGLEELQHLDFQHSTLKRVTEFSAFLSLEKLL 427

Query: 400 SLEICGGGLTDAGVKHIKDLSSLTLLNLSQNCNLTDKTLELISGLTGLVSLNVSNSRITS 459
            L+I               L+SL  L ++ N    +    + +  T L  L++S  ++  
Sbjct: 428 YLDISYTNTKIDFDGIFLGLTSLNTLKMAGNSFKDNTLSNVFANTTNLTFLDLSKCQLEQ 487

>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A* Length = 606

 Score =  100 bits (252), Expect = 6e-23
 Identities = 72/360 (20%), Positives = 129/360 (35%), Gaps = 20/360 (5%)

Query: 82  NLQSLDFNFCIQISDGGLEHLRGLSNLTSLS-----FRRNNAITAQGMKAFAGLINLVK- 135
            L  L        S+     L+ L+ L         F+    +         GL ++   
Sbjct: 205 KLHELTLRGNFNSSNIMKTCLQNLAGLHVHRLILGEFKDERNLEIFEPSIMEGLCDVTID 264

Query: 136 -LDLERCTRIHGGLVNLKGLMKLESLNIKWCNCITDSDMKPLSGLTNLKSLQISCSKVTD 194
              L         +V    L  + ++++     I    ++ +      +SL I   ++  
Sbjct: 265 EFRLTYTNDFSDDIVKFHCLANVSAMSLAG-VSIKY--LEDVPKHFKWQSLSIIRCQLKQ 321

Query: 195 SGIAYLKGLQKLTLLNLEGCPVTAACLDSLSALGSLFYLNLNRCQLSDDGCEKFSKIG-- 252
                L  L+ LTL   +G     +      AL SL YL+L+R  LS  GC  +S +G  
Sbjct: 322 FPTLDLPFLKSLTLTMNKG-----SISFKKVALPSLSYLDLSRNALSFSGCCSYSDLGTN 376

Query: 253 SLKVLNLGFNEITDECLVHLKGLTNLESLNLDSCGIGD-EGLVNLTGLCNLKCLELSDTQ 311
           SL+ L+L FN        +  GL  L+ L+     +           L  L  L++S T 
Sbjct: 377 SLRHLDLSFNGAIIMSA-NFMGLEELQHLDFQHSTLKRVTEFSAFLSLEKLLYLDISYTN 435

Query: 312 VGSSGLRHLSGLTNLESINLSFTGISDGSLRK-LAGLSSLKSLNLDARQITDTGLAALTS 370
                     GLT+L ++ ++     D +L    A  ++L  L+L   Q+         +
Sbjct: 436 TKIDFDGIFLGLTSLNTLKMAGNSFKDNTLSNVFANTTNLTFLDLSKCQLEQISWGVFDT 495

Query: 371 LTGLTHLDLFGARITDSGAAYLRNFKNLRSLEICGGGLTDAGVKHIKDLSSLTLLNLSQN 430
           L  L  L++    +    +++     +L +L+     +  +         SL   NL+ N
Sbjct: 496 LHRLQLLNMSHNNLLFLDSSHYNQLYSLSTLDCSFNRIETSKGILQHFPKSLAFFNLTNN 555

>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A* Length = 606

 Score = 94.3 bits (235), Expect = 8e-21
 Identities = 69/360 (19%), Positives = 121/360 (33%), Gaps = 44/360 (12%)

Query: 55  QGSSLLSVDLSGSDVTDSGL-IHLKDCSNLQSLD-----FNFCIQISDGGLEHLRGLSNL 108
           QG  L  + L G+  + + +   L++ + L         F     +       + GL ++
Sbjct: 202 QGIKLHELTLRGNFNSSNIMKTCLQNLAGLHVHRLILGEFKDERNLEIFEPSIMEGLCDV 261

Query: 109 TSLSFRRN-NAITAQGMKAFAGLINLVKLDLERCTRIHGGLVNLKGLMKLESLNIKWCNC 167
           T   FR       +  +  F  L N+  + L     I   L ++    K +SL+I     
Sbjct: 262 TIDEFRLTYTNDFSDDIVKFHCLANVSAMSLAGV-SIKY-LEDVPKHFKWQSLSIIR-CQ 318

Query: 168 ITDSDMKPLSGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACLDSLSAL 227
           +      P   L  LKSL ++ +K + S       L  L+ L+L    ++ +   S S L
Sbjct: 319 LKQF---PTLDLPFLKSLTLTMNKGSISFK--KVALPSLSYLDLSRNALSFSGCCSYSDL 373

Query: 228 G--SLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITD-ECLVHLKGLTNLESLNLD 284
           G  SL +L+L+           F  +  L+ L+   + +           L  L  L++ 
Sbjct: 374 GTNSLRHLDLSFNGAIIMSAN-FMGLEELQHLDFQHSTLKRVTEFSAFLSLEKLLYLDIS 432

Query: 285 SCGIGD------EGLVNLT-------------------GLCNLKCLELSDTQVGSSGLRH 319
                        GL +L                       NL  L+LS  Q+       
Sbjct: 433 YTNTKIDFDGIFLGLTSLNTLKMAGNSFKDNTLSNVFANTTNLTFLDLSKCQLEQISWGV 492

Query: 320 LSGLTNLESINLSFTGISDGSLRKLAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDL 379
              L  L+ +N+S   +          L SL +L+    +I  +          L   +L
Sbjct: 493 FDTLHRLQLLNMSHNNLLFLDSSHYNQLYSLSTLDCSFNRIETSKGILQHFPKSLAFFNL 552

>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A* Length = 606

 Score = 89.7 bits (223), Expect = 3e-19
 Identities = 63/368 (17%), Positives = 113/368 (30%), Gaps = 49/368 (13%)

Query: 106 SNLTSLSFRRNNAITAQGMKAFAGLINLVKLDLERCTRIHGGLVNLKGLMKLESLNIKWC 165
           S+  ++    N  +      +F+    L  LDL R                         
Sbjct: 32  SSTKNIDLSFNP-LKILKSYSFSNFSELQWLDLSR------------------------- 65

Query: 166 NCITDSDMKPLSGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACLDSLS 225
             I   + K   GL +L +L ++ + +         GL  L  L      + +     + 
Sbjct: 66  CEIETIEDKAWHGLHHLSNLILTGNPIQSFSPGSFSGLTSLENLVAVETKLASLESFPIG 125

Query: 226 ALGSLFYLNLNRCQLSDDGCEK-FSKIGSLKVLNLGFNEITDECLVHLKGLTNL----ES 280
            L +L  LN+    +        FS + +L  ++L +N I    +  L+ L        S
Sbjct: 126 QLITLKKLNVAHNFIHSCKLPAYFSNLTNLVHVDLSYNYIQTITVNDLQFLRENPQVNLS 185

Query: 281 LNLDSCGIGDEGLVNLTGLCNLKCLELSD----TQVGSSGLRHLSGLTNLESINLSFTG- 335
           L++    I         G+  L  L L      + +  + L++L+GL     I   F   
Sbjct: 186 LDMSLNPIDFIQDQAFQGI-KLHELTLRGNFNSSNIMKTCLQNLAGLHVHRLILGEFKDE 244

Query: 336 --ISDGSLRKLAGLSSLKSLNLDAR--QITDTGLAALTSLTGLTHLDLFGARITDSGAAY 391
             +       + GL  +                +     L  ++ + L G  I       
Sbjct: 245 RNLEIFEPSIMEGLCDVTIDEFRLTYTNDFSDDIVKFHCLANVSAMSLAGVSIKYLE--D 302

Query: 392 LRNFKNLRSLEICGGGLTDAGVKHIKDLSSLTLLNLSQNCNLTDKTLELISGLTGLVSLN 451
           +      +SL I    L         DL  L  L L+ N             L  L  L+
Sbjct: 303 VPKHFKWQSLSIIRCQLKQ---FPTLDLPFLKSLTLTMNKGSISFKK---VALPSLSYLD 356

Query: 452 VSNSRITS 459
           +S + ++ 
Sbjct: 357 LSRNALSF 364

>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A* Length = 606

 Score = 72.4 bits (178), Expect = 9e-14
 Identities = 53/262 (20%), Positives = 87/262 (33%), Gaps = 24/262 (9%)

Query: 206 LTLLNLEGCPVTAACLDSLSALGSLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEIT 265
              ++L   P+      S S    L +L+L+RC++     + +  +  L  L L  N I 
Sbjct: 34  TKNIDLSFNPLKILKSYSFSNFSELQWLDLSRCEIETIEDKAWHGLHHLSNLILTGNPIQ 93

Query: 266 DECLVHLKGLTNLESLNLDSCGIGDEGLVNLTGLCNLKCLELSDTQVGSSGL-RHLSGLT 324
                   GLT+LE+L      +       +  L  LK L ++   + S  L  + S LT
Sbjct: 94  SFSPGSFSGLTSLENLVAVETKLASLESFPIGQLITLKKLNVAHNFIHSCKLPAYFSNLT 153

Query: 325 NLESINLS---FTGISDGSLRKLAGLS-SLKSLNLDARQITDTGLAALTSLTGLTHLDLF 380
           NL  ++LS      I+   L+ L        SL++    I      A   +  L  L L 
Sbjct: 154 NLVHVDLSYNYIQTITVNDLQFLRENPQVNLSLDMSLNPIDFIQDQAFQGIK-LHELTLR 212

Query: 381 GARITDSGAAYLRNFKNLRSLEICGGGLTDAGVKHIKDLSSLTLLNLSQNCNLTDKTLEL 440
           G   + +        +NL  L +                  L L       NL      +
Sbjct: 213 GNFNSSNIMKTC--LQNLAGLHV----------------HRLILGEFKDERNLEIFEPSI 254

Query: 441 ISGLTGLVSLNVSNSRITSAGL 462
           + GL  +       +       
Sbjct: 255 MEGLCDVTIDEFRLTYTNDFSD 276

>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A* Length = 606

 Score = 50.0 bits (120), Expect = 1e-06
 Identities = 26/115 (22%), Positives = 43/115 (37%), Gaps = 1/115 (0%)

Query: 348 SSLKSLNLDARQITDTGLAALTSLTGLTHLDLFGARITDSGAAYLRNFKNLRSLEICGGG 407
           SS K+++L    +      + ++ + L  LDL    I            +L +L + G  
Sbjct: 32  SSTKNIDLSFNPLKILKSYSFSNFSELQWLDLSRCEIETIEDKAWHGLHHLSNLILTGNP 91

Query: 408 LTDAGVKHIKDLSSLTLLNLSQNCNLTDKTLELISGLTGLVSLNVSNSRITSAGL 462
           +          L+SL  L   +   L       I  L  L  LNV+++ I S  L
Sbjct: 92  IQSFSPGSFSGLTSLENLVAVET-KLASLESFPIGQLITLKKLNVAHNFIHSCKL 145

>4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes} Length = 197

 Score =  106 bits (267), Expect = 4e-27
 Identities = 46/190 (24%), Positives = 79/190 (41%), Gaps = 15/190 (7%)

Query: 198 AYLKGLQKLTLLNLEGCPVTAACLDSLSALGSLFYLNLNRCQLSDDGCEKFSKIGSLKVL 257
           +  K      L       +T A ++SL+      Y+ L    ++D          ++K L
Sbjct: 20  STFKAYLNGLLGQSSTANITEAQMNSLT------YITLANINVTD--LTGIEYAHNIKDL 71

Query: 258 NLGFNEITDECLVHLKGLTNLESLNLDSCGIGDEGLVNLTGLCNLKCLELSDTQVGSSGL 317
            +     T+     + GL+NLE L +    +  + + NL+GL +L  L++S +    S L
Sbjct: 72  TINNIHATN--YNPISGLSNLERLRIMGKDVTSDKIPNLSGLTSLTLLDISHSAHDDSIL 129

Query: 318 RHLSGLTNLESINLSF-TGISDGSLRKLAGLSSLKSLNLDARQITDTGLAALTSLTGLTH 376
             ++ L  + SI+LS+   I+D  +  L  L  LKSLN+    + D     +     L  
Sbjct: 130 TKINTLPKVNSIDLSYNGAITD--IMPLKTLPELKSLNIQFDGVHD--YRGIEDFPKLNQ 185

Query: 377 LDLFGARITD 386
           L  F   I  
Sbjct: 186 LYAFSQTIGG 195

>4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes} Length = 197

 Score = 97.3 bits (243), Expect = 8e-24
 Identities = 36/196 (18%), Positives = 75/196 (38%), Gaps = 13/196 (6%)

Query: 265 TDECLVHLKGLTNLESLNLDSCGIGDEGLVNLTGLCNLKCLELSDTQVGSSGLRHLSGLT 324
            D   +         +  L      +   +    + +L  + L++  V    L  +    
Sbjct: 12  QDNVNIPDSTFKAYLNGLLGQSSTAN---ITEAQMNSLTYITLANINVTD--LTGIEYAH 66

Query: 325 NLESINLSFTGISDGSLRKLAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLFGARI 384
           N++ + ++    ++     ++GLS+L+ L +  + +T   +  L+ LT LT LD+  +  
Sbjct: 67  NIKDLTINNIHATN--YNPISGLSNLERLRIMGKDVTSDKIPNLSGLTSLTLLDISHSAH 124

Query: 385 TDSGAAYLRNFKNLRSLEICG-GGLTDAGVKHIKDLSSLTLLNLSQNCNLTDKTLELISG 443
            DS    +     + S+++   G +TD  +  +K L  L  LN+     + D     I  
Sbjct: 125 DDSILTKINTLPKVNSIDLSYNGAITD--IMPLKTLPELKSLNIQ-FDGVHD--YRGIED 179

Query: 444 LTGLVSLNVSNSRITS 459
              L  L   +  I  
Sbjct: 180 FPKLNQLYAFSQTIGG 195

>4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes} Length = 197

 Score = 96.2 bits (240), Expect = 3e-23
 Identities = 43/168 (25%), Positives = 74/168 (44%), Gaps = 10/168 (5%)

Query: 50  DVIASQGSSLLSVDLSGSDVTDSGLIHLKDCSNLQSLDFNFCIQISDGGLEHLRGLSNLT 109
           ++  +Q +SL  + L+  +VTD  L  ++   N++ L  N     ++     + GLSNL 
Sbjct: 37  NITEAQMNSLTYITLANINVTD--LTGIEYAHNIKDLTINNI-HATN--YNPISGLSNLE 91

Query: 110 SLSFRRNNAITAQGMKAFAGLINLVKLDLERCTRIHGGLVNLKGLMKLESLNIKWCNCIT 169
            L     + +T+  +   +GL +L  LD+         L  +  L K+ S+++ +   IT
Sbjct: 92  RLRIMGKD-VTSDKIPNLSGLTSLTLLDISHSAHDDSILTKINTLPKVNSIDLSYNGAIT 150

Query: 170 DSDMKPLSGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVT 217
             D+ PL  L  LKSL I    V D     ++   KL  L      + 
Sbjct: 151 --DIMPLKTLPELKSLNIQFDGVHD--YRGIEDFPKLNQLYAFSQTIG 194

>4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes} Length = 197

 Score = 84.2 bits (209), Expect = 5e-19
 Identities = 41/210 (19%), Positives = 67/210 (31%), Gaps = 37/210 (17%)

Query: 58  SLLSVDLSGSDVTDSGLIHLKDCSNLQSLDFNFCIQISDGGLEHLRGLSNLTSLSFRRNN 117
           + L+  L  S   +   I     ++L  +       ++D  L  +    N+  L+   N 
Sbjct: 24  AYLNGLLGQSSTAN---ITEAQMNSLTYITLANI-NVTD--LTGIEYAHNIKDLTI-NNI 76

Query: 118 AITAQGMKAFAGLINLVKLDLERCTRIHGGLVNLKGLMKLESLNIKWCNCITDSDMKPLS 177
             T       +GL NL +L +                             +T   +  LS
Sbjct: 77  HAT--NYNPISGLSNLERLRIMG-------------------------KDVTSDKIPNLS 109

Query: 178 GLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACLDSLSALGSLFYLNLNR 237
           GLT+L  L IS S   DS +  +  L K+  ++L         +  L  L  L  LN+  
Sbjct: 110 GLTSLTLLDISHSAHDDSILTKINTLPKVNSIDLSYNGAITD-IMPLKTLPELKSLNIQF 168

Query: 238 CQLSDDGCEKFSKIGSLKVLNLGFNEITDE 267
             + D           L  L      I  +
Sbjct: 169 DGVHD--YRGIEDFPKLNQLYAFSQTIGGK 196

>4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes} Length = 197

 Score = 71.9 bits (177), Expect = 9e-15
 Identities = 26/138 (18%), Positives = 54/138 (39%), Gaps = 8/138 (5%)

Query: 57  SSLLSVDLSGSDVTDSGLIHLKDCSNLQSLDFNFCIQISDGGLEHLRGLSNLTSLSFRRN 116
            ++  + ++    T+     +   SNL+ L       ++   + +L GL++LT L    +
Sbjct: 66  HNIKDLTINNIHATN--YNPISGLSNLERLRIMGK-DVTSDKIPNLSGLTSLTLLDISHS 122

Query: 117 NAITAQGMKAFAGLINLVKLDLERCTRIHGGLVNLKGLMKLESLNIKWCNCITDSDMKPL 176
                  +     L  +  +DL     I   ++ LK L +L+SLNI++   +   D + +
Sbjct: 123 A-HDDSILTKINTLPKVNSIDLSYNGAI-TDIMPLKTLPELKSLNIQFDG-VH--DYRGI 177

Query: 177 SGLTNLKSLQISCSKVTD 194
                L  L      +  
Sbjct: 178 EDFPKLNQLYAFSQTIGG 195

>4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes} Length = 197

 Score = 60.4 bits (147), Expect = 7e-11
 Identities = 28/125 (22%), Positives = 51/125 (40%), Gaps = 8/125 (6%)

Query: 343 KLAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLFGARITDSGAAYLRNFKNLRSLE 402
             +   +  +  L      +   A + SLT   ++ L    +TD     +    N++ L 
Sbjct: 18  PDSTFKAYLNGLLGQSSTANITEAQMNSLT---YITLANINVTD--LTGIEYAHNIKDLT 72

Query: 403 ICGGGLTDAGVKHIKDLSSLTLLNLSQNCNLTDKTLELISGLTGLVSLNVSNSRITSAGL 462
           I     T+     I  LS+L  L +    ++T   +  +SGLT L  L++S+S    + L
Sbjct: 73  INNIHATN--YNPISGLSNLERLRIMGK-DVTSDKIPNLSGLTSLTLLDISHSAHDDSIL 129

Query: 463 RHLNH 467
             +N 
Sbjct: 130 TKINT 134

>1h6t_A Internalin B; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.6A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 2wqu_A 2uzy_A 2uzx_A 2wqv_A* 2wqw_A 2wqx_A 1d0b_A 1otn_A 1oto_A 1otm_A Length = 291

 Score =  109 bits (274), Expect = 5e-27
 Identities = 62/237 (26%), Positives = 107/237 (45%), Gaps = 17/237 (7%)

Query: 150 NLKGLMKLESLNIKWCNCITDSDMKPLSGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLL 209
           +     +    N+K    +TD      + L ++  +  + S +    +  ++ L  +T L
Sbjct: 19  SDDAFAETIKDNLKK-KSVTD--AVTQNELNSIDQIIANNSDIKS--VQGIQYLPNVTKL 73

Query: 210 NLEGCPVTAACLDSLSALGSLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECL 269
            L G  +T   +  L+ L +L +L L+  ++ D        +  LK L+L  N I+D  +
Sbjct: 74  FLNGNKLTD--IKPLANLKNLGWLFLDENKVKD--LSSLKDLKKLKSLSLEHNGISD--I 127

Query: 270 VHLKGLTNLESLNLDSCGIGDEGLVNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESI 329
             L  L  LESL L +  I D  +  L+ L  L  L L D Q+  S +  L+GLT L+++
Sbjct: 128 NGLVHLPQLESLYLGNNKITD--ITVLSRLTKLDTLSLEDNQI--SDIVPLAGLTKLQNL 183

Query: 330 NLSFTGISDGSLRKLAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLFGARITD 386
            LS   ISD  LR LAGL +L  L L +++  +  +   ++L     +      +  
Sbjct: 184 YLSKNHISD--LRALAGLKNLDVLELFSQECLNKPINHQSNLVVPNTVKNTDGSLVT 238

>1h6t_A Internalin B; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.6A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 2wqu_A 2uzy_A 2uzx_A 2wqv_A* 2wqw_A 2wqx_A 1d0b_A 1otn_A 1oto_A 1otm_A Length = 291

 Score =  103 bits (259), Expect = 5e-25
 Identities = 67/270 (24%), Positives = 113/270 (41%), Gaps = 20/270 (7%)

Query: 108 LTSLSFRRNNAITAQGMKAFAGLINLVKLDLERCTRIHGGLVNLKGLMKLESLNIKWCNC 167
           L S +      I    + +       +K +L++ +      V    L  ++ +     + 
Sbjct: 3   LGSETITVPTPIKQ--IFSDDAFAETIKDNLKKKSVTD--AVTQNELNSIDQIIANN-SD 57

Query: 168 ITDSDMKPLSGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACLDSLSAL 227
           I    ++ +  L N+  L ++ +K+TD  I  L  L+ L  L L+   V    L SL  L
Sbjct: 58  IKS--VQGIQYLPNVTKLFLNGNKLTD--IKPLANLKNLGWLFLDENKVK--DLSSLKDL 111

Query: 228 GSLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNLDSCG 287
             L  L+L    +SD        +  L+ L LG N+ITD  +  L  LT L++L+L+   
Sbjct: 112 KKLKSLSLEHNGISD--INGLVHLPQLESLYLGNNKITD--ITVLSRLTKLDTLSLEDNQ 167

Query: 288 IGDEGLVNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISDGSLRKLAGL 347
           I D  +V L GL  L+ L LS   +  S LR L+GL NL+ + L      +  +   + L
Sbjct: 168 ISD--IVPLAGLTKLQNLYLSKNHI--SDLRALAGLKNLDVLELFSQECLNKPINHQSNL 223

Query: 348 SSLKSL-NLDARQITDTGLAALTSLTGLTH 376
               ++ N D   +T   ++          
Sbjct: 224 VVPNTVKNTDGSLVTPEIISDDGDYEKPNV 253

>1h6t_A Internalin B; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.6A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 2wqu_A 2uzy_A 2uzx_A 2wqv_A* 2wqw_A 2wqx_A 1d0b_A 1otn_A 1oto_A 1otm_A Length = 291

 Score = 97.0 bits (242), Expect = 8e-23
 Identities = 57/261 (21%), Positives = 105/261 (40%), Gaps = 21/261 (8%)

Query: 77  LKDCSNLQSLDFNFCIQISDGGLEHLRGLSNLTSLSFRRNNAITAQGMKAFAGLINLVKL 136
               +     +      ++D        L+++  +    ++ I +  ++    L N+ KL
Sbjct: 20  DDAFAETIKDNLKKK-SVTD--AVTQNELNSIDQIIANNSD-IKS--VQGIQYLPNVTKL 73

Query: 137 DLERCTRIHGGLVNLKGLMKLESLNIKWCNCITDSDMKPLSGLTNLKSLQISCSKVTDSG 196
            L    ++   +  L  L  L  L +   N + D  +  L  L  LKSL +  + ++D  
Sbjct: 74  FLNG-NKLTD-IKPLANLKNLGWLFLD-ENKVKD--LSSLKDLKKLKSLSLEHNGISD-- 126

Query: 197 IAYLKGLQKLTLLNLEGCPVTAACLDSLSALGSLFYLNLNRCQLSDDGCEKFSKIGSLKV 256
           I  L  L +L  L L    +T   +  LS L  L  L+L   Q+SD      + +  L+ 
Sbjct: 127 INGLVHLPQLESLYLGNNKIT--DITVLSRLTKLDTLSLEDNQISD--IVPLAGLTKLQN 182

Query: 257 LNLGFNEITDECLVHLKGLTNLESLNLDSCGIGDEGLVNLTGLCNLKCLELSDTQVGSSG 316
           L L  N I+D  L  L GL NL+ L L S    ++ + + + L     ++ +D  + +  
Sbjct: 183 LYLSKNHISD--LRALAGLKNLDVLELFSQECLNKPINHQSNLVVPNTVKNTDGSLVT-- 238

Query: 317 LRHLSGLTNLESINLSFTGIS 337
              +S   + E  N+ +    
Sbjct: 239 PEIISDDGDYEKPNVKWHLPE 259

>1h6t_A Internalin B; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.6A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 2wqu_A 2uzy_A 2uzx_A 2wqv_A* 2wqw_A 2wqx_A 1d0b_A 1otn_A 1oto_A 1otm_A Length = 291

 Score = 95.1 bits (237), Expect = 4e-22
 Identities = 51/217 (23%), Positives = 92/217 (42%), Gaps = 23/217 (10%)

Query: 254 LKVLNLGFNEITDECLVHLKGLTNLESLNLDSCGIGDEGLVNLTGLCNLKCLELSDTQVG 313
               NL    +TD   V    L +++ +  ++  I    +  +  L N+  L L+  ++ 
Sbjct: 26  TIKDNLKKKSVTD--AVTQNELNSIDQIIANNSDIKS--VQGIQYLPNVTKLFLNGNKLT 81

Query: 314 SSGLRHLSGLTNLESINLSFTGISDGSLRKLAGLSSLKSLNLDARQITDTGLAALTSLTG 373
              ++ L+ L NL  + L    + D  L  L  L  LKSL+L+   I+D  +  L  L  
Sbjct: 82  D--IKPLANLKNLGWLFLDENKVKD--LSSLKDLKKLKSLSLEHNGISD--INGLVHLPQ 135

Query: 374 LTHLDLFGARITDSGAAYLRNFKNLRSLEICGGGLTDAGVKHIKDLSSLTLLNLSQNCNL 433
           L  L L   +ITD     L     L +L +    ++D  +  +  L+ L  L LS+N ++
Sbjct: 136 LESLYLGNNKITDITV--LSRLTKLDTLSLEDNQISD--IVPLAGLTKLQNLYLSKN-HI 190

Query: 434 TDKTLELISGLTG---LVSLNVSNSRITSAGLRHLNH 467
           +D     +  L G   L  L + +    +  + H ++
Sbjct: 191 SD-----LRALAGLKNLDVLELFSQECLNKPINHQSN 222

>1h6t_A Internalin B; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.6A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 2wqu_A 2uzy_A 2uzx_A 2wqv_A* 2wqw_A 2wqx_A 1d0b_A 1otn_A 1oto_A 1otm_A Length = 291

 Score = 80.9 bits (200), Expect = 3e-17
 Identities = 40/198 (20%), Positives = 78/198 (39%), Gaps = 39/198 (19%)

Query: 262 NEITDECLVHLKGLTNLESLNLDSCGIGDEGLVNLTGLCNLKCLELSDTQVGSSGLRHLS 321
             I    +            NL    + D   V    L ++  +  +++ + S  ++ + 
Sbjct: 12  TPIKQ--IFSDDAFAETIKDNLKKKSVTD--AVTQNELNSIDQIIANNSDIKS--VQGIQ 65

Query: 322 GLTNLESINLSFTGISDGSLRKLAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLFG 381
            L N+  + L+   ++D  ++ LA L +L  L LD  ++ D  L++L  L  L  L L  
Sbjct: 66  YLPNVTKLFLNGNKLTD--IKPLANLKNLGWLFLDENKVKD--LSSLKDLKKLKSLSLEH 121

Query: 382 ARITDSGAAYLRNFKNLRSLEICGGGLTDAGVKHIKDLSSLTLLNLSQNCNLTDKTLELI 441
             I+D                          +  +  L  L  L L  N  +TD  + ++
Sbjct: 122 NGISD--------------------------INGLVHLPQLESLYLGNN-KITD--ITVL 152

Query: 442 SGLTGLVSLNVSNSRITS 459
           S LT L +L++ +++I+ 
Sbjct: 153 SRLTKLDTLSLEDNQISD 170

>1h6t_A Internalin B; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.6A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 2wqu_A 2uzy_A 2uzx_A 2wqv_A* 2wqw_A 2wqx_A 1d0b_A 1otn_A 1oto_A 1otm_A Length = 291

 Score = 63.9 bits (156), Expect = 1e-11
 Identities = 54/181 (29%), Positives = 80/181 (44%), Gaps = 17/181 (9%)

Query: 57  SSLLSVDLSGSDVTDSGLIHLKDCSNLQSLDFNFCIQISDGGLEHLRGLSNLTSLSFRRN 116
            +L  + L  + V D  L  LKD   L+SL       ISD  +  L  L  L SL    N
Sbjct: 90  KNLGWLFLDENKVKD--LSSLKDLKKLKSLSLEHN-GISD--INGLVHLPQLESLYLGNN 144

Query: 117 NAITAQGMKAFAGLINLVKLDLERCTRIHGGLVNLKGLMKLESLNIKWCNCITDSDMKPL 176
             IT   +   + L  L  L LE   +I   +V L GL KL++L +   N I+D  ++ L
Sbjct: 145 K-IT--DITVLSRLTKLDTLSLED-NQISD-IVPLAGLTKLQNLYLS-KNHISD--LRAL 196

Query: 177 SGLTNLKSLQISCSKVTDSGIAYLKGLQKL-TLLNLEGCPVTAACLDSLSALGSLFYLNL 235
           +GL NL  L++   +  +  I +   L    T+ N +G  VT    + +S  G     N+
Sbjct: 197 AGLKNLDVLELFSQECLNKPINHQSNLVVPNTVKNTDGSLVT---PEIISDDGDYEKPNV 253

Query: 236 N 236
            
Sbjct: 254 K 254

>3fxi_A TLR4, htoll, TOLL-like receptor 4; leucine rich repeat, glycoprotein, immune response, inflamma response, innate immunity, membrane, receptor; HET: PA1 KDO GMH FTT DAO MYR NAG GCS; 3.10A {Homo sapiens} Length = 605

 Score =  108 bits (272), Expect = 2e-25
 Identities = 86/420 (20%), Positives = 151/420 (35%), Gaps = 28/420 (6%)

Query: 57  SSLLSVDLSGSDVTDSGLIHLKDCSNLQSLDFNFCIQISDGGLEHLRGLSNLTSLSFRRN 116
           S L ++ L+G+ +    L      S+LQ L       ++      +  L  L  L+   N
Sbjct: 76  SHLSTLILTGNPIQSLALGAFSGLSSLQKLVAVET-NLASLENFPIGHLKTLKELNVAHN 134

Query: 117 NAITAQGMKAFAGLINLVKLDLERC---TRIHGGLVNLKGL-MKLESLNIKWCNCITDSD 172
              + +  + F+ L NL  LDL      +     L  L  + +   SL++   N +    
Sbjct: 135 LIQSFKLPEYFSNLTNLEHLDLSSNKIQSIYCTDLRVLHQMPLLNLSLDLSL-NPMNFIQ 193

Query: 173 MKPLSGLTNLKSLQISCSK----VTDSGIAYLKGLQKLTLLNLEGCPVTAACLDSLSALG 228
                 +  L  L +  +     V  + I  L GL+   L+  E            SAL 
Sbjct: 194 PGAFKEI-RLHKLTLRNNFDSLNVMKTCIQGLAGLEVHRLVLGEFRNEGNLEKFDKSALE 252

Query: 229 SLFYLNLNRCQLS------DDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLN 282
            L  L +   +L+      DD  + F+ + ++   +L    I    +         + L 
Sbjct: 253 GLCNLTIEEFRLAYLDYYLDDIIDLFNCLTNVSSFSLVSVTIER--VKDFSYNFGWQHLE 310

Query: 283 LDSCGIGDEGLVNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISDGSL- 341
           L +C  G         L       L+ T            L +LE ++LS  G+S     
Sbjct: 311 LVNCKFG-----QFPTLKLKSLKRLTFTSNKGGNAFSEVDLPSLEFLDLSRNGLSFKGCC 365

Query: 342 -RKLAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLFGARITD-SGAAYLRNFKNLR 399
            +   G +SLK L+L    +     +    L  L HLD   + +   S  +   + +NL 
Sbjct: 366 SQSDFGTTSLKYLDLSFNGVITMS-SNFLGLEQLEHLDFQHSNLKQMSEFSVFLSLRNLI 424

Query: 400 SLEICGGGLTDAGVKHIKDLSSLTLLNLSQNCNLTDKTLELISGLTGLVSLNVSNSRITS 459
            L+I       A       LSSL +L ++ N    +   ++ + L  L  L++S  ++  
Sbjct: 425 YLDISHTHTRVAFNGIFNGLSSLEVLKMAGNSFQENFLPDIFTELRNLTFLDLSQCQLEQ 484

>3fxi_A TLR4, htoll, TOLL-like receptor 4; leucine rich repeat, glycoprotein, immune response, inflamma response, innate immunity, membrane, receptor; HET: PA1 KDO GMH FTT DAO MYR NAG GCS; 3.10A {Homo sapiens} Length = 605

 Score =  100 bits (252), Expect = 6e-23
 Identities = 77/372 (20%), Positives = 136/372 (36%), Gaps = 30/372 (8%)

Query: 106 SNLTSLSFRRNNAITAQGMKAFAGLINLVKLDLERC--TRIHGGLVNLKGLMKLESLNIK 163
            +  +L    N  +   G  +F     L  LDL RC    I  G    + L  L +L + 
Sbjct: 28  FSTKNLDLSFNP-LRHLGSYSFFSFPELQVLDLSRCEIQTIEDGA--YQSLSHLSTLILT 84

Query: 164 WCNCITDSDMKPLSGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACL-D 222
             N I    +   SGL++L+ L    + +       +  L+ L  LN+    + +  L +
Sbjct: 85  G-NPIQSLALGAFSGLSSLQKLVAVETNLASLENFPIGHLKTLKELNVAHNLIQSFKLPE 143

Query: 223 SLSALGSLFYLNLNRCQLSDDGCEKFSKIGSLKV----LNLGFNEITDECLVHLKGLTNL 278
             S L +L +L+L+  ++    C     +  + +    L+L  N +        K +  L
Sbjct: 144 YFSNLTNLEHLDLSSNKIQSIYCTDLRVLHQMPLLNLSLDLSLNPMNFIQPGAFKEI-RL 202

Query: 279 ESLNLDSCGIGDEGLVN-LTGLCNLKCLELSDTQVGSSG------LRHLSGLTNLESINL 331
             L L +       +   + GL  L+   L   +  + G         L GL NL     
Sbjct: 203 HKLTLRNNFDSLNVMKTCIQGLAGLEVHRLVLGEFRNEGNLEKFDKSALEGLCNLTIEEF 262

Query: 332 SFTGIS---DGSLRKLAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLFGARITDSG 388
               +    D  +     L+++ S +L +  I    +   +   G  HL+L   +     
Sbjct: 263 RLAYLDYYLDDIIDLFNCLTNVSSFSLVSVTI--ERVKDFSYNFGWQHLELVNCKFGQFP 320

Query: 389 AAYLRNFKNLRSLEICGGGLTDAGVKHIKDLSSLTLLNLSQN-CNLTDKTLELISGLTGL 447
              L++ K L      GG           DL SL  L+LS+N  +      +   G T L
Sbjct: 321 TLKLKSLKRLTFTSNKGGNAF-----SEVDLPSLEFLDLSRNGLSFKGCCSQSDFGTTSL 375

Query: 448 VSLNVSNSRITS 459
             L++S + + +
Sbjct: 376 KYLDLSFNGVIT 387

>3fxi_A TLR4, htoll, TOLL-like receptor 4; leucine rich repeat, glycoprotein, immune response, inflamma response, innate immunity, membrane, receptor; HET: PA1 KDO GMH FTT DAO MYR NAG GCS; 3.10A {Homo sapiens} Length = 605

 Score = 92.0 bits (229), Expect = 4e-20
 Identities = 66/363 (18%), Positives = 107/363 (29%), Gaps = 24/363 (6%)

Query: 55  QGSSLLSVDLSG-------SDVTDSGLIHLKDCSNLQSLDFNFCIQISDGGLEHLRGLSN 107
           +   L  + L               GL  L+    L   +F     +       L GL N
Sbjct: 198 KEIRLHKLTLRNNFDSLNVMKTCIQGLAGLE-VHRLVLGEFRNEGNLEKFDKSALEGLCN 256

Query: 108 LT--SLSFRRNNAITAQGMKAFAGLINLVKLDLERCTRIHGGLVNLKGLMKLESLNIKWC 165
           LT         +      +  F  L N+    L   T     + +       + L +  C
Sbjct: 257 LTIEEFRLAYLDYYLDDIIDLFNCLTNVSSFSLVSVT--IERVKDFSYNFGWQHLELVNC 314

Query: 166 NCITDSDMKPLSGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTA--ACLDS 223
                     L  L  L                    L  L  L+L    ++    C  S
Sbjct: 315 K-FGQFPTLKLKSLKRLTFTSNKGGNAFS-----EVDLPSLEFLDLSRNGLSFKGCCSQS 368

Query: 224 LSALGSLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDEC-LVHLKGLTNLESLN 282
                SL YL+L+   +       F  +  L+ L+   + +           L NL  L+
Sbjct: 369 DFGTTSLKYLDLSFNGVITMS-SNFLGLEQLEHLDFQHSNLKQMSEFSVFLSLRNLIYLD 427

Query: 283 LDSCGIGDEGLVNLTGLCNLKCLELSDTQ-VGSSGLRHLSGLTNLESINLSFTGISDGSL 341
           +              GL +L+ L+++      +      + L NL  ++LS   +   S 
Sbjct: 428 ISHTHTRVAFNGIFNGLSSLEVLKMAGNSFQENFLPDIFTELRNLTFLDLSQCQLEQLSP 487

Query: 342 RKLAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLFGARITDSGAAYLRN-FKNLRS 400
                LSSL+ LN+               L  L  LD     I  S    L++   +L  
Sbjct: 488 TAFNSLSSLQVLNMSHNNFFSLDTFPYKCLNSLQVLDYSLNHIMTSKKQELQHFPSSLAF 547

Query: 401 LEI 403
           L +
Sbjct: 548 LNL 550

>3fxi_A TLR4, htoll, TOLL-like receptor 4; leucine rich repeat, glycoprotein, immune response, inflamma response, innate immunity, membrane, receptor; HET: PA1 KDO GMH FTT DAO MYR NAG GCS; 3.10A {Homo sapiens} Length = 605

 Score = 78.5 bits (194), Expect = 1e-15
 Identities = 56/235 (23%), Positives = 88/235 (37%), Gaps = 11/235 (4%)

Query: 54  SQGSSLLSVDLSGSDVTDSGLIHLKDCSNLQSLDFNFCIQISDGGLEHLRGLSNLTSLSF 113
           S       ++L          + LK    L           S+  L  L  L     LS 
Sbjct: 301 SYNFGWQHLELVNCKFGQFPTLKLKSLKRLTFTSNKGGNAFSEVDLPSLEFL----DLS- 355

Query: 114 RRNNAITAQGM--KAFAGLINLVKLDLERCTRIHGGLVNLKGLMKLESLNIKWCNCITDS 171
              N ++ +G   ++  G  +L  LDL     +     N  GL +LE L+ +  N    S
Sbjct: 356 --RNGLSFKGCCSQSDFGTTSLKYLDLSFN-GVITMSSNFLGLEQLEHLDFQHSNLKQMS 412

Query: 172 DMKPLSGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAA-CLDSLSALGSL 230
           +      L NL  L IS +    +      GL  L +L + G         D  + L +L
Sbjct: 413 EFSVFLSLRNLIYLDISHTHTRVAFNGIFNGLSSLEVLKMAGNSFQENFLPDIFTELRNL 472

Query: 231 FYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNLDS 285
            +L+L++CQL       F+ + SL+VLN+  N          K L +L+ L+   
Sbjct: 473 TFLDLSQCQLEQLSPTAFNSLSSLQVLNMSHNNFFSLDTFPYKCLNSLQVLDYSL 527

>3fxi_A TLR4, htoll, TOLL-like receptor 4; leucine rich repeat, glycoprotein, immune response, inflamma response, innate immunity, membrane, receptor; HET: PA1 KDO GMH FTT DAO MYR NAG GCS; 3.10A {Homo sapiens} Length = 605

 Score = 76.6 bits (189), Expect = 4e-15
 Identities = 67/345 (19%), Positives = 112/345 (32%), Gaps = 45/345 (13%)

Query: 157 LESLNIKWCNCITDSDMKPLSGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPV 216
            ++L++ + N +             L+ L +S  ++        + L  L+ L L G P+
Sbjct: 30  TKNLDLSF-NPLRHLGSYSFFSFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNPI 88

Query: 217 TAACLDSLSALGSLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVH-LKGL 275
            +  L + S L SL  L      L+         + +LK LN+  N I    L      L
Sbjct: 89  QSLALGAFSGLSSLQKLVAVETNLASLENFPIGHLKTLKELNVAHNLIQSFKLPEYFSNL 148

Query: 276 TNLESLNLDSCGIGDEGLVNLTGLCNLKC----LELSDTQVGSSGLRHLSGLTNLESINL 331
           TNLE L+L S  I      +L  L  +      L+LS   +          +  L  + L
Sbjct: 149 TNLEHLDLSSNKIQSIYCTDLRVLHQMPLLNLSLDLSLNPMNFIQPGAFKEI-RLHKLTL 207

Query: 332 SFTGISDGSLRK-LAGLSSLKSLNLDARQITDTG---------LAALTSLTG----LTHL 377
                S   ++  + GL+ L+   L   +  + G         L  L +LT     L +L
Sbjct: 208 RNNFDSLNVMKTCIQGLAGLEVHRLVLGEFRNEGNLEKFDKSALEGLCNLTIEEFRLAYL 267

Query: 378 DLFGARITDSGAAYLRNFKNLRSLEICGGGLTDAGVKHIKDLSSLTLLNLSQN------- 430
           D +   I D          N+ S  +    +    VK          L L          
Sbjct: 268 DYYLDDIIDL----FNCLTNVSSFSLVSVTIE--RVKDFSYNFGWQHLELVNCKFGQFPT 321

Query: 431 -----------CNLTDKTLELISGLTGLVSLNVSNSRITSAGLRH 464
                       +           L  L  L++S + ++  G   
Sbjct: 322 LKLKSLKRLTFTSNKGGNAFSEVDLPSLEFLDLSRNGLSFKGCCS 366

>3fxi_A TLR4, htoll, TOLL-like receptor 4; leucine rich repeat, glycoprotein, immune response, inflamma response, innate immunity, membrane, receptor; HET: PA1 KDO GMH FTT DAO MYR NAG GCS; 3.10A {Homo sapiens} Length = 605

 Score = 48.9 bits (117), Expect = 2e-06
 Identities = 30/115 (26%), Positives = 45/115 (39%), Gaps = 1/115 (0%)

Query: 348 SSLKSLNLDARQITDTGLAALTSLTGLTHLDLFGARITDSGAAYLRNFKNLRSLEICGGG 407
            S K+L+L    +   G  +  S   L  LDL    I        ++  +L +L + G  
Sbjct: 28  FSTKNLDLSFNPLRHLGSYSFFSFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNP 87

Query: 408 LTDAGVKHIKDLSSLTLLNLSQNCNLTDKTLELISGLTGLVSLNVSNSRITSAGL 462
           +    +     LSSL  L   +  NL       I  L  L  LNV+++ I S  L
Sbjct: 88  IQSLALGAFSGLSSLQKLVAVET-NLASLENFPIGHLKTLKELNVAHNLIQSFKL 141

>3goz_A Leucine-rich repeat-containing protein; LEGL7, NESG, LGR148, structural genomics, PSI-2, protein structure initiative; 2.10A {Legionella pneumophila subsp} Length = 362

 Score =  104 bits (261), Expect = 6e-25
 Identities = 46/287 (16%), Positives = 91/287 (31%), Gaps = 45/287 (15%)

Query: 224 LSALGSLFYLNLNRCQLSDDGCEKFSKI-----GSLKVLNLGFNEITDECLVHL-----K 273
            S    +  L+L+   L      +  +       S+  LNL  N +  +    L      
Sbjct: 18  TSIPHGVTSLDLSLNNLYSISTVELIQAFANTPASVTSLNLSGNSLGFKNSDELVQILAA 77

Query: 274 GLTNLESLNLDSCGIGDEGLVNLTGL-----CNLKCLELSDTQVGSSGLRHLSGL----- 323
              N+ SLNL    +  +    L          +  L+L      S              
Sbjct: 78  IPANVTSLNLSGNFLSYKSSDELVKTLAAIPFTITVLDLGWNDFSSKSSSEFKQAFSNLP 137

Query: 324 TNLESINLSFTGISDGSLRKLAGL-----SSLKSLNLDARQITDTGLAALTSL-----TG 373
            ++ S+NL    +   S  +L  +     +++ SLNL    +     A L          
Sbjct: 138 ASITSLNLRGNDLGIKSSDELIQILAAIPANVNSLNLRGNNLASKNCAELAKFLASIPAS 197

Query: 374 LTHLDLFGARITDSGAAYL-----RNFKNLRSLEICGGGLTDAGVKHIKDL----SSLTL 424
           +T LDL    +     A L         ++ SL +C   L    ++++K L      L  
Sbjct: 198 VTSLDLSANLLGLKSYAELAYIFSSIPNHVVSLNLCLNCLHGPSLENLKLLKDSLKHLQT 257

Query: 425 LNLSQN--CNLTDKTL----ELISGLTGLVSLNVSNSRITSAGLRHL 465
           + L  +   N++ +           +  ++ ++ +   I  +    +
Sbjct: 258 VYLDYDIVKNMSKEQCKALGAAFPNIQKIILVDKNGKEIHPSHSIPI 304

>3goz_A Leucine-rich repeat-containing protein; LEGL7, NESG, LGR148, structural genomics, PSI-2, protein structure initiative; 2.10A {Legionella pneumophila subsp} Length = 362

 Score =  100 bits (250), Expect = 2e-23
 Identities = 57/336 (16%), Positives = 108/336 (32%), Gaps = 57/336 (16%)

Query: 151 LKGLMKLESLNIKWCNCITDSDMKPLSGL-----TNLKSLQISCSKVTDSGIAYL----- 200
                 + SL++   N +       L         ++ SL +S + +       L     
Sbjct: 18  TSIPHGVTSLDLSLNN-LYSISTVELIQAFANTPASVTSLNLSGNSLGFKNSDELVQILA 76

Query: 201 KGLQKLTLLNLEGCPVTAACLDSLSAL-----GSLFYLNLNRCQLSDDGCEKFSKI---- 251
                +T LNL G  ++    D L         ++  L+L     S     +F +     
Sbjct: 77  AIPANVTSLNLSGNFLSYKSSDELVKTLAAIPFTITVLDLGWNDFSSKSSSEFKQAFSNL 136

Query: 252 -GSLKVLNLGFNEITDECLVHL-KGL----TNLESLNLDSCGIGDEGLVNLTGL-----C 300
             S+  LNL  N++  +    L + L     N+ SLNL    +  +    L         
Sbjct: 137 PASITSLNLRGNDLGIKSSDELIQILAAIPANVNSLNLRGNNLASKNCAELAKFLASIPA 196

Query: 301 NLKCLELSDTQVGSSGLRHLSGL-----TNLESINLSFTGISDGSLRKLAGL----SSLK 351
           ++  L+LS   +G      L+ +      ++ S+NL    +   SL  L  L      L+
Sbjct: 197 SVTSLDLSANLLGLKSYAELAYIFSSIPNHVVSLNLCLNCLHGPSLENLKLLKDSLKHLQ 256

Query: 352 SLNLDARQITDTG-------LAALTSLTGLTHLDLFGARITDSGAAYLRNF-----KNLR 399
           ++ LD   + +          AA  ++  +  +D  G  I  S +  + N          
Sbjct: 257 TVYLDYDIVKNMSKEQCKALGAAFPNIQKIILVDKNGKEIHPSHSIPISNLIRELSGKAD 316

Query: 400 SLEICGGGLTDAG-----VKHIKDLSSLTLLNLSQN 430
              +    L  A      ++ +     L     +  
Sbjct: 317 VPSLLNQCLIFAQKHQTNIEDLNIPDELRESIQTCK 352

>3goz_A Leucine-rich repeat-containing protein; LEGL7, NESG, LGR148, structural genomics, PSI-2, protein structure initiative; 2.10A {Legionella pneumophila subsp} Length = 362

 Score = 76.7 bits (189), Expect = 2e-15
 Identities = 44/304 (14%), Positives = 95/304 (31%), Gaps = 54/304 (17%)

Query: 57  SSLLSVDLSGSDVTDSGLIHL-----KDCSNLQSLDFNFCIQISDGGLEHL-----RGLS 106
             + S+DLS +++     + L        +++ SL+ +    +     + L        +
Sbjct: 22  HGVTSLDLSLNNLYSISTVELIQAFANTPASVTSLNLSGN-SLGFKNSDELVQILAAIPA 80

Query: 107 NLTSLSFRRNNAITAQGMKAFAGLI-----NLVKLDLERCTRIHGGLVNLKGLMK----- 156
           N+TSL+   N  ++ +        +      +  LDL             K         
Sbjct: 81  NVTSLNLSGNF-LSYKSSDELVKTLAAIPFTITVLDLGWNDFSSKSSSEFKQAFSNLPAS 139

Query: 157 LESLNIKWCNCITDSDMKPLSGL-----TNLKSLQISCSKVTDSGIAYL-KGL----QKL 206
           + SLN+   N +       L  +      N+ SL +  + +     A L K L      +
Sbjct: 140 ITSLNL-RGNDLGIKSSDELIQILAAIPANVNSLNLRGNNLASKNCAELAKFLASIPASV 198

Query: 207 TLLNLEGCPVTAACLDSLSAL-----GSLFYLNLNRCQLSDDGCEKFSKIG----SLKVL 257
           T L+L    +       L+ +       +  LNL    L     E    +      L+ +
Sbjct: 199 TSLDLSANLLGLKSYAELAYIFSSIPNHVVSLNLCLNCLHGPSLENLKLLKDSLKHLQTV 258

Query: 258 NLGFN---EITDECLVH----LKGLTNLESLNLDSCGIGDEGLVNLTGL-----CNLKCL 305
            L ++    ++ E           +  +  ++ +   I     + ++ L           
Sbjct: 259 YLDYDIVKNMSKEQCKALGAAFPNIQKIILVDKNGKEIHPSHSIPISNLIRELSGKADVP 318

Query: 306 ELSD 309
            L +
Sbjct: 319 SLLN 322

>3goz_A Leucine-rich repeat-containing protein; LEGL7, NESG, LGR148, structural genomics, PSI-2, protein structure initiative; 2.10A {Legionella pneumophila subsp} Length = 362

 Score = 53.2 bits (128), Expect = 7e-08
 Identities = 33/269 (12%), Positives = 83/269 (30%), Gaps = 67/269 (24%)

Query: 50  DVIASQGSSLLSVDLSGSDVTDSGLIHLKDCSNLQSLDFNFCIQISDGGLEHLRGLSNLT 109
             +A+   ++  +DL  +D +              +L                   +++T
Sbjct: 102 KTLAAIPFTITVLDLGWNDFSSKSSSEF--KQAFSNLP------------------ASIT 141

Query: 110 SLSFRRNNAITAQGMKAFAGLINLVKLDLERCTRIHGGLVNLKGLMKLESLNIKWCNCIT 169
           SL+ R N+ +  +       ++  +                      + SLN+   N + 
Sbjct: 142 SLNLRGND-LGIKSSDELIQILAAIPA-------------------NVNSLNL-RGNNLA 180

Query: 170 DSDMKPLSGL-----TNLKSLQISCSKVTDSGIAYL-KGLQ----KLTLLNLEGCPVTAA 219
             +   L+        ++ SL +S + +     A L          +  LNL    +   
Sbjct: 181 SKNCAELAKFLASIPASVTSLDLSANLLGLKSYAELAYIFSSIPNHVVSLNLCLNCLHGP 240

Query: 220 CLDSLSALG----SLFYLNLNRCQLSDDGCEKFSKIGS-------LKVLNLGFNEITDEC 268
            L++L  L      L  + L+   + +   E+   +G+       + +++    EI    
Sbjct: 241 SLENLKLLKDSLKHLQTVYLDYDIVKNMSKEQCKALGAAFPNIQKIILVDKNGKEIHPSH 300

Query: 269 LVHL-----KGLTNLESLNLDSCGIGDEG 292
            + +     +     +  +L +  +    
Sbjct: 301 SIPISNLIRELSGKADVPSLLNQCLIFAQ 329

>3goz_A Leucine-rich repeat-containing protein; LEGL7, NESG, LGR148, structural genomics, PSI-2, protein structure initiative; 2.10A {Legionella pneumophila subsp} Length = 362

 Score = 48.5 bits (116), Expect = 2e-06
 Identities = 20/118 (16%), Positives = 40/118 (33%), Gaps = 16/118 (13%)

Query: 366 AALTSLTGLTHLDLFGARITDSGAAYL-----RNFKNLRSLEICGGGLTDAGVKHIKDL- 419
              +   G+T LDL    +       L         ++ SL + G  L       +  + 
Sbjct: 16  EFTSIPHGVTSLDLSLNNLYSISTVELIQAFANTPASVTSLNLSGNSLGFKNSDELVQIL 75

Query: 420 ----SSLTLLNLSQNCNLTDKTLELISGL-----TGLVSLNVSNSRITSAGLRHLNHA 468
               +++T LNLS    L+ K+ + +          +  L++  +  +S        A
Sbjct: 76  AAIPANVTSLNLS-GNFLSYKSSDELVKTLAAIPFTITVLDLGWNDFSSKSSSEFKQA 132

>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A* Length = 549

 Score =  103 bits (259), Expect = 6e-24
 Identities = 74/413 (17%), Positives = 146/413 (35%), Gaps = 26/413 (6%)

Query: 57  SSLLSVDLSGSDVTD--SGLIHLKDCSNLQSLDFNFCIQISDGGLEHLRGLSNLTSLSFR 114
            +    D      T   SGL      + ++SLD +F  +I+  G   LR  +NL  L  +
Sbjct: 5   DASGVCDGRSRSFTSIPSGL-----TAAMKSLDLSFN-KITYIGHGDLRACANLQVLILK 58

Query: 115 RNNAITAQGMKAFAGLINLVKLDLERC--TRIHGGLVNLKGLMKLESLNIKWCNCITDSD 172
            +  I      AF  L +L  LDL     + +         L  L+ LN+      T   
Sbjct: 59  SSR-INTIEGDAFYSLGSLEHLDLSDNHLSSLSSSW--FGPLSSLKYLNLMGNPYQTLGV 115

Query: 173 MKPLSGLTNLKSLQIS-CSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACLDSLSALGSLF 231
                 LTNL++L+I      ++       GL  L  L ++   +      SL ++  + 
Sbjct: 116 TSLFPNLTNLQTLRIGNVETFSEIRRIDFAGLTSLNELEIKALSLRNYQSQSLKSIRDIH 175

Query: 232 YLNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNLDSCGIGDE 291
           +L L+  + +         + S++ L L    +       L        +   +      
Sbjct: 176 HLTLHLSESAFLLEIFADILSSVRYLELRDTNLARFQFSPLPVDEVSSPMKKLAFRGSVL 235

Query: 292 GLVNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISDGSLRKLAGLSSLK 351
              +   L  L    L  ++V               S +   + +            +++
Sbjct: 236 TDESFNELLKLLRYILELSEVEFDDCTLNGLGDFNPSESDVVSELG------KVETVTIR 289

Query: 352 SLNLDARQITDTGLAALTSLTGLTHLDLFGARITDSGAAYLRNFKNLRSLEICGGGLTDA 411
            L++    +        + L  +  + +  +++     ++ ++ K+L  L++    + + 
Sbjct: 290 RLHIPQFYLFYDLSTVYSLLEKVKRITVENSKVFLVPCSFSQHLKSLEFLDLSENLMVEE 349

Query: 412 GVKH---IKDLSSLTLLNLSQNCNLTD--KTLELISGLTGLVSLNVSNSRITS 459
            +K+        SL  L LSQN +L    KT E++  L  L SL++S +    
Sbjct: 350 YLKNSACKGAWPSLQTLVLSQN-HLRSMQKTGEILLTLKNLTSLDISRNTFHP 401

>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A* Length = 549

 Score = 98.6 bits (246), Expect = 3e-22
 Identities = 79/426 (18%), Positives = 148/426 (34%), Gaps = 50/426 (11%)

Query: 57  SSLLSVDLSGSDVTDSGLIHLKDCSNLQSLDFNFCIQISDGGLEHLRGLSNLTSLSFRRN 116
           +++ S+DLS + +T  G   L+ C+NLQ L      +I+    +    L +L  L    +
Sbjct: 26  AAMKSLDLSFNKITYIGHGDLRACANLQVLILKSS-RINTIEGDAFYSLGSLEHLDLS-D 83

Query: 117 NAITAQGMKAFAGLINLVKLDLERC--TRIHGGLVNLKGLMKLESLNIKWCNCITDSDMK 174
           N +++     F  L +L  L+L       +    +    L  L++L I      ++    
Sbjct: 84  NHLSSLSSSWFGPLSSLKYLNLMGNPYQTLGVTSL-FPNLTNLQTLRIGNVETFSEIRRI 142

Query: 175 PLSGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACLDSLSALGSLFYLN 234
             +GLT+L  L+I    + +     LK ++ +  L L               L S+ YL 
Sbjct: 143 DFAGLTSLNELEIKALSLRNYQSQSLKSIRDIHHLTLHLSESAFLLEIFADILSSVRYLE 202

Query: 235 LNRCQLSDDGCEKFSK---IGSLKVLNLGFNEITDECLVHL----KGLTNLESLNLDSCG 287
           L    L+               +K L    + +TDE    L    + +  L  +  D C 
Sbjct: 203 LRDTNLARFQFSPLPVDEVSSPMKKLAFRGSVLTDESFNELLKLLRYILELSEVEFDDCT 262

Query: 288 IGDEGLVNLT-----------GLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSFTGI 336
           +   G  N +               ++ L +    +        S L  ++ I +  + +
Sbjct: 263 LNGLGDFNPSESDVVSELGKVETVTIRRLHIPQFYLFYDLSTVYSLLEKVKRITVENSKV 322

Query: 337 SDGSLRKLAGLSSLKSLNLDARQITDTGL---AALTSLTGLTHLDLFGARITDSGAAYLR 393
                     L SL+ L+L    + +  L   A   +   L  L L    +         
Sbjct: 323 FLVPCSFSQHLKSLEFLDLSENLMVEEYLKNSACKGAWPSLQTLVLSQNHLR-------- 374

Query: 394 NFKNLRSLEICGGGLTDAGVKHIKDLSSLTLLNLSQNCNLTDKTLELISGLTGLVSLNVS 453
                 S++  G          +  L +LT L++S+N        +       +  LN+S
Sbjct: 375 ------SMQKTGE--------ILLTLKNLTSLDISRN-TFHPMP-DSCQWPEKMRFLNLS 418

Query: 454 NSRITS 459
           ++ I  
Sbjct: 419 STGIRV 424

>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A* Length = 549

 Score = 93.3 bits (232), Expect = 2e-20
 Identities = 68/428 (15%), Positives = 150/428 (35%), Gaps = 39/428 (9%)

Query: 57  SSLLSVDLSGSDVTDSGLIHLKDCSNLQSLDFNFCIQISDGGLEHLRGLSNLTSLSFRRN 116
            SL  +DLS + ++          S+L+ L+       + G       L+NL +L     
Sbjct: 74  GSLEHLDLSDNHLSSLSSSWFGPLSSLKYLNLMGNPYQTLGVTSLFPNLTNLQTLRIGNV 133

Query: 117 NAITAQGMKAFAGLINLVKLDLERC--TRIHGGLVNLKGLMKLESLNIKWCNCITDSDMK 174
              +      FAGL +L +L+++             LK +  +  L +            
Sbjct: 134 ETFSEIRRIDFAGLTSLNELEIKALSLRNYQSQS--LKSIRDIHHLTLHLSE-SAFLLEI 190

Query: 175 PLSGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACLDSLSALGSLFYLN 234
               L++++ L++  + +     + L   +  + +       +    +S + L  L    
Sbjct: 191 FADILSSVRYLELRDTNLARFQFSPLPVDEVSSPMKKLAFRGSVLTDESFNELLKLLRYI 250

Query: 235 LNRCQLSDDGC-------------EKFSKIGSLKVLNLGFNEITDECLVHL-----KGLT 276
           L   ++  D C             +  S++G ++ + +    I    L +        L 
Sbjct: 251 LELSEVEFDDCTLNGLGDFNPSESDVVSELGKVETVTIRRLHIPQFYLFYDLSTVYSLLE 310

Query: 277 NLESLNLDSCGIGDEGLVNLTGLCNLKCLELSDTQVGSSGLRH---LSGLTNLESINLSF 333
            ++ + +++  +          L +L+ L+LS+  +    L++        +L+++ LS 
Sbjct: 311 KVKRITVENSKVFLVPCSFSQHLKSLEFLDLSENLMVEEYLKNSACKGAWPSLQTLVLSQ 370

Query: 334 TGISD--GSLRKLAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLFGARITDSGAAY 391
             +     +   L  L +L SL++           +      +  L+L    I       
Sbjct: 371 NHLRSMQKTGEILLTLKNLTSLDISRNTFH-PMPDSCQWPEKMRFLNLSSTGIRVVKTCI 429

Query: 392 LRNFKNLRSLEICGGGLTDAGVKHIKDLSSLTLLNLSQNCNLTDKTLELISGLTGLVSLN 451
               + L  L++    L    +     L  L  L +S+N  L   TL   S    L+ + 
Sbjct: 430 ---PQTLEVLDVSNNNLDSFSL----FLPRLQELYISRN-KLK--TLPDASLFPVLLVMK 479

Query: 452 VSNSRITS 459
           +S +++ S
Sbjct: 480 ISRNQLKS 487

>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A* Length = 549

 Score = 88.2 bits (219), Expect = 8e-19
 Identities = 63/426 (14%), Positives = 132/426 (30%), Gaps = 68/426 (15%)

Query: 57  SSLLSVDLSG---SDVTDSGLIHLKDCSNLQSLDFNFCIQISDGGLEHLRGLSNLTSLSF 113
           SSL  ++L G     +  + L    + +NLQ+L        S+       GL++L  L  
Sbjct: 98  SSLKYLNLMGNPYQTLGVTSLFP--NLTNLQTLRIGNVETFSEIRRIDFAGLTSLNELEI 155

Query: 114 RRNNAITAQGMKAFAGLINLVKLDLERCTRIHGGLVNLKGLMKLESLNIKWCNCITDSDM 173
           +  + +     ++   + ++  L L          +    L  +  L ++    +     
Sbjct: 156 KALS-LRNYQSQSLKSIRDIHHLTLHLSESAFLLEIFADILSSVRYLELR-DTNLARFQF 213

Query: 174 KPLSGLTNLKSLQISC----------------------------------------SKVT 193
            PL        ++                                           +   
Sbjct: 214 SPLPVDEVSSPMKKLAFRGSVLTDESFNELLKLLRYILELSEVEFDDCTLNGLGDFNPSE 273

Query: 194 DSGIAYLKGLQKLTL--LNLEGCPVTAACLDSLSALGSLFYLNLNRCQLSDDGCEKFSKI 251
              ++ L  ++ +T+  L++    +        S L  +  + +   ++    C     +
Sbjct: 274 SDVVSELGKVETVTIRRLHIPQFYLFYDLSTVYSLLEKVKRITVENSKVFLVPCSFSQHL 333

Query: 252 GSLKVLNLGFNEITDECLVH---LKGLTNLESLNLDSCGIGDEGLVN--LTGLCNLKCLE 306
            SL+ L+L  N + +E L +        +L++L L    +         L  L NL  L+
Sbjct: 334 KSLEFLDLSENLMVEEYLKNSACKGAWPSLQTLVLSQNHLRSMQKTGEILLTLKNLTSLD 393

Query: 307 LSDTQVGSSGLRHLSGLTNLESINLSFTGISDGSLRKLAGLSSLKSLNLDARQITDTGLA 366
           +S                 +  +NLS TGI    ++      +L+ L++    +      
Sbjct: 394 ISRNTFHPMP-DSCQWPEKMRFLNLSSTGIR--VVKT-CIPQTLEVLDVSNNNLDSFS-- 447

Query: 367 ALTSLTGLTHLDLFGARIT--DSGAAYLRNFKNLRSLEICGGGLTDAGVKHIKDLSSLTL 424
               L  L  L +   ++      +     F  L  ++I    L          L+SL  
Sbjct: 448 --LFLPRLQELYISRNKLKTLPDAS----LFPVLLVMKISRNQLKSVPDGIFDRLTSLQK 501

Query: 425 LNLSQN 430
           + L  N
Sbjct: 502 IWLHTN 507

>1xeu_A Internalin C; cellular invasion, leucine-rich repeat, cell invasion; 2.05A {Listeria monocytogenes} Length = 263

 Score = 98.9 bits (247), Expect = 1e-23
 Identities = 46/241 (19%), Positives = 89/241 (36%), Gaps = 18/241 (7%)

Query: 221 LDSLSALGSLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLES 280
           +     L +    NL +  ++D       ++  ++  N   + I    L  ++  TNL+ 
Sbjct: 12  VFPDPGLANAVKQNLGKQSVTD--LVSQKELSGVQNFNGDNSNIQS--LAGMQFFTNLKE 67

Query: 281 LNLDSCGIGDEGLVNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISDGS 340
           L+L    I D  L  L  L  L+ L ++  ++    L  +     L  + L    + D  
Sbjct: 68  LHLSHNQISD--LSPLKDLTKLEELSVNRNRL--KNLNGIPSA-CLSRLFLDNNELRD-- 120

Query: 341 LRKLAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLFGARITDSGAAYLRNFKNLRS 400
              L  L +L+ L++   ++    +  L  L+ L  LDL G  IT+     L   K +  
Sbjct: 121 TDSLIHLKNLEILSIRNNKLKS--IVMLGFLSKLEVLDLHGNEITN--TGGLTRLKKVNW 176

Query: 401 LEICGGGLTDAGVKHIKDLSSLTLLNLSQNCNLTDKTLELISGLTGLVSLNVSNSRITSA 460
           +++ G    +   + +K    L + N  ++ +    +   IS     V   V        
Sbjct: 177 IDLTGQKCVN---EPVKYQPELYITNTVKDPDGRWISPYYISNGGSYVDGCVLWELPVYT 233

Query: 461 G 461
            
Sbjct: 234 D 234

>1xeu_A Internalin C; cellular invasion, leucine-rich repeat, cell invasion; 2.05A {Listeria monocytogenes} Length = 263

 Score = 96.2 bits (240), Expect = 1e-22
 Identities = 44/218 (20%), Positives = 87/218 (39%), Gaps = 16/218 (7%)

Query: 171 SDMKPLSGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACLDSLSALGSL 230
           + + P  GL N     +    VTD  +   K L  +   N +   + +  L  +    +L
Sbjct: 10  NQVFPDPGLANAVKQNLGKQSVTD--LVSQKELSGVQNFNGDNSNIQS--LAGMQFFTNL 65

Query: 231 FYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNLDSCGIGD 290
             L+L+  Q+SD        +  L+ L++  N + +  L  +     L  L LD+  + D
Sbjct: 66  KELHLSHNQISD--LSPLKDLTKLEELSVNRNRLKN--LNGIPSA-CLSRLFLDNNELRD 120

Query: 291 EGLVNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISDGSLRKLAGLSSL 350
               +L  L NL+ L + + ++    +  L  L+ LE ++L    I++     L  L  +
Sbjct: 121 --TDSLIHLKNLEILSIRNNKL--KSIVMLGFLSKLEVLDLHGNEITN--TGGLTRLKKV 174

Query: 351 KSLNLDARQITDTGLAALTSLTGLTHL-DLFGARITDS 387
             ++L  ++  +  +     L     + D  G  I+  
Sbjct: 175 NWIDLTGQKCVNEPVKYQPELYITNTVKDPDGRWISPY 212

>1xeu_A Internalin C; cellular invasion, leucine-rich repeat, cell invasion; 2.05A {Listeria monocytogenes} Length = 263

 Score = 76.6 bits (189), Expect = 5e-16
 Identities = 38/231 (16%), Positives = 90/231 (38%), Gaps = 19/231 (8%)

Query: 74  LIHLKDCSNLQSLDFNFCIQISDGGLEHLRGLSNLTSLSFRRNNAITAQGMKAFAGLINL 133
           +      +N    +      ++D  L   + LS + + +   +N  +   +       NL
Sbjct: 12  VFPDPGLANAVKQNLGKQ-SVTD--LVSQKELSGVQNFNGDNSNIQS---LAGMQFFTNL 65

Query: 134 VKLDLERCTRIHGGLVNLKGLMKLESLNIKWCNCITDSDMKPLSGLTNLKSLQISCSKVT 193
            +L L    +I   L  LK L KLE L++   N + +  +  +     L  L +  +++ 
Sbjct: 66  KELHLSHN-QISD-LSPLKDLTKLEELSVNR-NRLKN--LNGIPSA-CLSRLFLDNNELR 119

Query: 194 DSGIAYLKGLQKLTLLNLEGCPVTAACLDSLSALGSLFYLNLNRCQLSDDGCEKFSKIGS 253
           D     L  L+ L +L++    + +  +  L  L  L  L+L+  ++++      +++  
Sbjct: 120 D--TDSLIHLKNLEILSIRNNKLKS--IVMLGFLSKLEVLDLHGNEITNT--GGLTRLKK 173

Query: 254 LKVLNLGFNEITDECLVHLKGLTNLESL-NLDSCGIGDEGLVNLTGLCNLK 303
           +  ++L   +  +E + +   L    ++ + D   I    + N     +  
Sbjct: 174 VNWIDLTGQKCVNEPVKYQPELYITNTVKDPDGRWISPYYISNGGSYVDGC 224

>1xeu_A Internalin C; cellular invasion, leucine-rich repeat, cell invasion; 2.05A {Listeria monocytogenes} Length = 263

 Score = 58.5 bits (142), Expect = 7e-10
 Identities = 45/230 (19%), Positives = 84/230 (36%), Gaps = 47/230 (20%)

Query: 57  SSLLSVDLSGSDVTDSGLIHLKDCSNLQSLDFNFCIQISDGGLEHLRGLSNLTSLSFRRN 116
           S + + +   S++    L  ++  +NL+ L  +   QISD  L  L+ L+ L  LS  RN
Sbjct: 41  SGVQNFNGDNSNIQS--LAGMQFFTNLKELHLSHN-QISD--LSPLKDLTKLEELSVNRN 95

Query: 117 --------------------NAITAQGMKAFAGLINLVKLDLERCTRIHGGLVNLKGLMK 156
                               N +      +   L NL  L +    ++   +V L  L K
Sbjct: 96  RLKNLNGIPSACLSRLFLDNNELR--DTDSLIHLKNLEILSIRNN-KLKS-IVMLGFLSK 151

Query: 157 LESLNIKWCNCITDSDMKPLSGLTNLKSLQISCSKVTDSGIAYLKGLQKL-TLLNLEGCP 215
           LE L++   N IT+     L+ L  +  + ++  K  +  + Y   L    T+ + +G  
Sbjct: 152 LEVLDL-HGNEITN--TGGLTRLKKVNWIDLTGQKCVNEPVKYQPELYITNTVKDPDGRW 208

Query: 216 VTAACLDSLSALGSLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEIT 265
           ++      +S  GS     +            +        ++  F+E  
Sbjct: 209 IS---PYYISNGGSYVDGCV-----------LWELPVYTDEVSYKFSEYI 244

>3un9_A NLR family member X1; leucine rich repeat (LRR), antiviral signaling, MAVS, TRAF6, UQCRC2, immune system; 2.65A {Homo sapiens} Length = 372

 Score =  100 bits (251), Expect = 2e-23
 Identities = 61/372 (16%), Positives = 118/372 (31%), Gaps = 48/372 (12%)

Query: 108 LTSLSFRRNNAITAQGMKAFAGLINLVKLDLERCTRIHGGLVNLKGLMKLESLNIKWCNC 167
           L  L    N A+ AQ       + NL  L+  +  +   G +  + L   E L+  + + 
Sbjct: 3   LVGLLSAHNRAVLAQ---LGCPIKNLDALENAQAIKKKLGKLGRQVLPPSELLDHLFFHY 59

Query: 168 ITDSDMKPLSGLTNLKSLQISCSKVTDSGIAYL-KGLQ----KLTLLNLEGCPVTAACLD 222
              +       L++L+ L ++  ++T      +   L      L  +NL  C +  A L 
Sbjct: 60  EFQNQRFSAEVLSSLRQLNLAGVRMTPVKCTVVAAVLGSGRHALDEVNLASCQLDPAGLR 119

Query: 223 SL-SALGSLFYLNLNRCQLSDDGCEKFSKI-----GSLKVLNLGFNEITDECLVH----L 272
           +L         L L    L  + C+    +       +  L L  N +T   +      L
Sbjct: 120 TLLPVFLRARKLGLQLNSLGPEACKDLRDLLLHDQCQITTLRLSNNPLTAAGVAVLMEGL 179

Query: 273 KGLTNLESLNLDSCGIGDEGLVN----LTGLCNLKCLELSDTQVGSSGLRHLSGL----T 324
            G T++  L+L   G+GDEGL      L     L+ L ++    G +    L+       
Sbjct: 180 AGNTSVTHLSLLHTGLGDEGLELLAAQLDRNRQLQELNVAYNGAGDTAALALARAAREHP 239

Query: 325 NLESINLSFTGISDGSLRKLA-------GLSSLKSLNLDARQITDTGLAALTS-LTGLTH 376
           +LE ++L F  +S    + L        G + +     +   +++     L+     L  
Sbjct: 240 SLELLHLYFNELSSEGRQVLRDLGGAAEGGARVVVSLTEGTAVSEYWSVILSEVQRNLNS 299

Query: 377 LDLFGARITDSGAAYLRNFKNLRSLEICGGGLTDAGVKHI----KDLSSLTLLNLSQNCN 432
            D             ++    L   ++                 +    +  L      +
Sbjct: 300 WDRAR----------VQRHLELLLRDLEDSRGATLNPWRKAQLLRVEGEVRALLEQLGSS 349

Query: 433 LTDKTLELISGL 444
            +          
Sbjct: 350 GSPSGSWSHPQF 361

>3un9_A NLR family member X1; leucine rich repeat (LRR), antiviral signaling, MAVS, TRAF6, UQCRC2, immune system; 2.65A {Homo sapiens} Length = 372

 Score = 96.7 bits (241), Expect = 4e-22
 Identities = 62/341 (18%), Positives = 110/341 (32%), Gaps = 50/341 (14%)

Query: 173 MKPLSGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACLDSLSALGSLFY 232
             P+  L  L++ Q    K+   G   L   + L  L             S   L SL  
Sbjct: 19  GCPIKNLDALENAQAIKKKLGKLGRQVLPPSELLDHLFFHYE--FQNQRFSAEVLSSLRQ 76

Query: 233 LNLNRCQLSDDGCEKFSKI-----GSLKVLNLGFNEITDECLVHL-KGLTNLESLNLDSC 286
           LNL   +++   C   + +      +L  +NL   ++    L  L         L L   
Sbjct: 77  LNLAGVRMTPVKCTVVAAVLGSGRHALDEVNLASCQLDPAGLRTLLPVFLRARKLGLQLN 136

Query: 287 GIGDEGLVNLTGL-----CNLKCLELSDTQVGSSGLRHLSGL----TNLESINLSFTGIS 337
            +G E   +L  L     C +  L LS+  + ++G+  L       T++  ++L  TG+ 
Sbjct: 137 SLGPEACKDLRDLLLHDQCQITTLRLSNNPLTAAGVAVLMEGLAGNTSVTHLSLLHTGLG 196

Query: 338 DGSLRKLAGL----SSLKSLNLDARQITDTGLAALTSL----TGLTHLDLFGARITDSGA 389
           D  L  LA        L+ LN+      DT   AL         L  L L+   ++  G 
Sbjct: 197 DEGLELLAAQLDRNRQLQELNVAYNGAGDTAALALARAAREHPSLELLHLYFNELSSEGR 256

Query: 390 AYL-------RNFKNLRSLEICGGGLTDAGVKHI----KDLSSLTLLNLSQNCNLTDKTL 438
             L            +      G  +++     +    ++L+S     + ++  L  + L
Sbjct: 257 QVLRDLGGAAEGGARVVVSLTEGTAVSEYWSVILSEVQRNLNSWDRARVQRHLELLLRDL 316

Query: 439 --------------ELISGLTGLVSLNVSNSRITSAGLRHL 465
                         +L+     + +L        S      
Sbjct: 317 EDSRGATLNPWRKAQLLRVEGEVRALLEQLGSSGSPSGSWS 357

>3un9_A NLR family member X1; leucine rich repeat (LRR), antiviral signaling, MAVS, TRAF6, UQCRC2, immune system; 2.65A {Homo sapiens} Length = 372

 Score = 79.4 bits (196), Expect = 3e-16
 Identities = 52/351 (14%), Positives = 103/351 (29%), Gaps = 82/351 (23%)

Query: 57  SSLLSVDLSGSDVTDSGLIHL-----KDCSNLQSLDFNFCIQISDGGLEHL-RGLSNLTS 110
           SSL  ++L+G  +T      +          L  ++   C Q+   GL  L         
Sbjct: 72  SSLRQLNLAGVRMTPVKCTVVAAVLGSGRHALDEVNLASC-QLDPAGLRTLLPVFLRARK 130

Query: 111 LSFRRNNAITAQGMKAFAGLINLVKLDLERCTRIHGGLVNLKGLMKLESLNIKWCNCITD 170
           L  + N+ +  +  K    L     L  ++C               + +L +   N +T 
Sbjct: 131 LGLQLNS-LGPEACKDLRDL-----LLHDQCQ--------------ITTLRL-SNNPLTA 169

Query: 171 SDMKPLSGL----TNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACLDSLSA 226
           + +  L       T++  L +  + + D G+  L                       L  
Sbjct: 170 AGVAVLMEGLAGNTSVTHLSLLHTGLGDEGLELL--------------------AAQLDR 209

Query: 227 LGSLFYLNLNRCQLSDDGCEKFSKI----GSLKVLNLGFNEITD-------ECLVHLKGL 275
              L  LN+      D      ++      SL++L+L FNE++        +     +G 
Sbjct: 210 NRQLQELNVAYNGAGDTAALALARAAREHPSLELLHLYFNELSSEGRQVLRDLGGAAEGG 269

Query: 276 TNLESLNLDSCGIGDEGLVNLT-GLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSFT 334
             +     +   + +   V L+    NL   + +  Q              L   +L  +
Sbjct: 270 ARVVVSLTEGTAVSEYWSVILSEVQRNLNSWDRARVQRH----------LELLLRDLEDS 319

Query: 335 GISDGSLRKLAGL----SSLKSLNLDARQITDTG----LAALTSLTGLTHL 377
             +  +  + A L      +++L                       G  H 
Sbjct: 320 RGATLNPWRKAQLLRVEGEVRALLEQLGSSGSPSGSWSHPQFEKGAGHHHH 370

>3un9_A NLR family member X1; leucine rich repeat (LRR), antiviral signaling, MAVS, TRAF6, UQCRC2, immune system; 2.65A {Homo sapiens} Length = 372

 Score = 66.3 bits (162), Expect = 5e-12
 Identities = 41/240 (17%), Positives = 70/240 (29%), Gaps = 52/240 (21%)

Query: 239 QLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNLDSCGIGDEGLVNLTG 298
           +L   G +       L  L     E  ++     + L++L  LNL    +       +  
Sbjct: 37  KLGKLGRQVLPPSELLDHLFF-HYEFQNQRFS-AEVLSSLRQLNLAGVRMTPVKCTVV-- 92

Query: 299 LCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISDGSLRKLA-GLSSLKSLNLDA 357
                          ++ L        L+ +NL+   +    LR L       + L L  
Sbjct: 93  ---------------AAVLGSGR--HALDEVNLASCQLDPAGLRTLLPVFLRARKLGLQL 135

Query: 358 RQITDTGLAALTSL-----TGLTHLDLFGARITDSGAAY----LRNFKNLRSLEICGGGL 408
             +       L  L       +T L L    +T +G A     L    ++  L +   GL
Sbjct: 136 NSLGPEACKDLRDLLLHDQCQITTLRLSNNPLTAAGVAVLMEGLAGNTSVTHLSLLHTGL 195

Query: 409 TDAGVKHIKDLSSLTLLNLSQNCNLTDKTLELISGLTGLVSLNVSNSRITSAGLRHLNHA 468
            D G++ +          L +N  L                LNV+ +         L  A
Sbjct: 196 GDEGLELLAAQ-------LDRNRQLQ--------------ELNVAYNGAGDTAALALARA 234

>3un9_A NLR family member X1; leucine rich repeat (LRR), antiviral signaling, MAVS, TRAF6, UQCRC2, immune system; 2.65A {Homo sapiens} Length = 372

 Score = 64.0 bits (156), Expect = 2e-11
 Identities = 39/287 (13%), Positives = 88/287 (30%), Gaps = 57/287 (19%)

Query: 30  DCALQDLCLGQYPGVNDKWMDVIASQGSSLLSVDLSGSDVTDSGLIHL-----KDCSNLQ 84
             AL ++ L     ++   +  +         + L  + +       L      D   + 
Sbjct: 100 RHALDEVNLASC-QLDPAGLRTLLPVFLRARKLGLQLNSLGPEACKDLRDLLLHDQCQIT 158

Query: 85  SLDFNFCIQISDGGLEHL-RGLS---NLTSLSFRRNNAITAQGMKAFAGLINLVKLDLER 140
           +L  +    ++  G+  L  GL+   ++T LS   +  +  +G++  A            
Sbjct: 159 TLRLSNN-PLTAAGVAVLMEGLAGNTSVTHLSL-LHTGLGDEGLELLAAQ---------- 206

Query: 141 CTRIHGGLVNLKGLMKLESLNIKWCNCITDSDMKPLSGL----TNLKSLQISCSKVTDSG 196
                     L    +L+ LN+   N   D+    L+       +L+ L +  ++++  G
Sbjct: 207 ----------LDRNRQLQELNV-AYNGAGDTAALALARAAREHPSLELLHLYFNELSSEG 255

Query: 197 IAYL-------KGLQKLTLLNLEGCPVTAACLDSLSALGSLFYLNLNRCQLSDDGCEKFS 249
              L       +G  ++ +   EG  V+      LS +              D    +  
Sbjct: 256 RQVLRDLGGAAEGGARVVVSLTEGTAVSEYWSVILSEV-------QRNLNSWDRA--RVQ 306

Query: 250 KIGSLKVLNLGFNEITDECLVH----LKGLTNLESLNLDSCGIGDEG 292
           +   L + +L  +             L+    + +L       G   
Sbjct: 307 RHLELLLRDLEDSRGATLNPWRKAQLLRVEGEVRALLEQLGSSGSPS 353

>3un9_A NLR family member X1; leucine rich repeat (LRR), antiviral signaling, MAVS, TRAF6, UQCRC2, immune system; 2.65A {Homo sapiens} Length = 372

 Score = 48.6 bits (116), Expect = 2e-06
 Identities = 27/165 (16%), Positives = 52/165 (31%), Gaps = 14/165 (8%)

Query: 317 LRHLSGLTNLESINLSFTGISDGSLRKLAG-LSSLKSLNLDARQITDTGLA-ALTSLTGL 374
           L  L           +   I     +     L   + L+             +   L+ L
Sbjct: 15  LAQLGCPIKNLDALENAQAIKKKLGKLGRQVLPPSELLDHLFFHYEFQNQRFSAEVLSSL 74

Query: 375 THLDLFGARITDSGAAYL-----RNFKNLRSLEICGGGLTDAGVKHI-KDLSSLTLLNLS 428
             L+L G R+T      +          L  + +    L  AG++ +         L L 
Sbjct: 75  RQLNLAGVRMTPVKCTVVAAVLGSGRHALDEVNLASCQLDPAGLRTLLPVFLRARKLGLQ 134

Query: 429 QNCNLTDKTLELISGL-----TGLVSLNVSNSRITSAGLRHLNHA 468
              +L  +  + +  L       + +L +SN+ +T+AG+  L   
Sbjct: 135 -LNSLGPEACKDLRDLLLHDQCQITTLRLSNNPLTAAGVAVLMEG 178

>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens} Length = 570

 Score =  100 bits (251), Expect = 8e-23
 Identities = 89/423 (21%), Positives = 159/423 (37%), Gaps = 34/423 (8%)

Query: 57  SSLLSVDLSGSDVTDSGLIHLKDCSNLQSLDFNFCIQISDGGLEHLRGLSNLTSLSFRRN 116
           S L ++ L+G+ +    L      S+LQ L       ++      +  L  L  L+   N
Sbjct: 76  SHLSTLILTGNPIQSLALGAFSGLSSLQKLVAVET-NLASLENFPIGHLKTLKELNVAHN 134

Query: 117 NAITAQGMKAFAGLINLVKLDLERC--TRIHGGLVNLKGLMKLESLNIKW---CNCITDS 171
              + +  + F+ L NL  LDL       I+    +L+ L ++  LN+      N +   
Sbjct: 135 LIQSFKLPEYFSNLTNLEHLDLSSNKIQSIYCT--DLRVLHQMPLLNLSLDLSLNPMNFI 192

Query: 172 DMKPLSGLTNLKSLQISCSK----VTDSGIAYLKGLQKLTLLNLEGCPVTAACLDSLSAL 227
                  +  L  L +  +     V  + I  L GL+   L+  E            SAL
Sbjct: 193 QPGAFKEI-RLHKLTLRNNFDSLNVMKTCIQGLAGLEVHRLVLGEFRNEGNLEKFDKSAL 251

Query: 228 GSLFYLNLNRCQLS------DDGCEKFSKIGSLKVLNLGFNEITD-ECLVHLKGLTNLES 280
             L  L +   +L+      DD  + F+ + ++   +L    I   +   +  G  +LE 
Sbjct: 252 EGLCNLTIEEFRLAYLDYYLDDIIDLFNCLTNVSSFSLVSVTIERVKDFSYNFGWQHLEL 311

Query: 281 LNLDSCGIGDEGLVNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISDGS 340
           +N          L       +LK L  +  + G+        L +LE ++LS  G+S   
Sbjct: 312 VNCKFGQFPTLKLK------SLKRLTFTSNKGGN--AFSEVDLPSLEFLDLSRNGLSFKG 363

Query: 341 LRKLA--GLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLFGARITDSGAAY-LRNFKN 397
               +  G +SLK L+L    +     +    L  L HLD   + +          + +N
Sbjct: 364 CCSQSDFGTTSLKYLDLSFNGVITMS-SNFLGLEQLEHLDFQHSNLKQMSEFSVFLSLRN 422

Query: 398 LRSLEICGGGLTDAGVKHIKDLSSLTLLNLSQNCNLTDKTL-ELISGLTGLVSLNVSNSR 456
           L  L+I       A       LSSL +L ++ N +  +  L ++ + L  L  L++S  +
Sbjct: 423 LIYLDISHTHTRVAFNGIFNGLSSLEVLKMAGN-SFQENFLPDIFTELRNLTFLDLSQCQ 481

Query: 457 ITS 459
           +  
Sbjct: 482 LEQ 484

>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens} Length = 570

 Score = 96.7 bits (241), Expect = 1e-21
 Identities = 82/440 (18%), Positives = 140/440 (31%), Gaps = 69/440 (15%)

Query: 81  SNLQSLDFNFCIQISDGGLEHLRGLSNLTSLSFRRNNAITAQGMKAFAGLINLVKLDLER 140
            + ++LD +F   +   G         L  L   R   I      A+  L +L  L L  
Sbjct: 28  FSTKNLDLSFN-PLRHLGSYSFFSFPELQVLDLSRCE-IQTIEDGAYQSLSHLSTLILTG 85

Query: 141 C--TRIHGGLVNLKGLMKLESLNIKWCNCITDSDMKPLSGLTNLKSLQISCSKVTDSGI- 197
                +  G     GL  L+ L     N +   +  P+  L  LK L ++ + +    + 
Sbjct: 86  NPIQSLALGA--FSGLSSLQKLVAVETN-LASLENFPIGHLKTLKELNVAHNLIQSFKLP 142

Query: 198 AYLKGLQKLTLLNLEGCPVTAACLDSLSALGSL----FYLNLNRCQLSDDGCEKFSKIGS 253
            Y   L  L  L+L    + +     L  L  +      L+L+   ++      F +I  
Sbjct: 143 EYFSNLTNLEHLDLSSNKIQSIYCTDLRVLHQMPLLNLSLDLSLNPMNFIQPGAFKEI-R 201

Query: 254 LKVLNLGFNEITDECL-VHLKGLTNLESLNLDSCGIGDEGLVN------LTGLCNLKCLE 306
           L  L L  N  +   +   ++GL  LE   L      +EG +       L GLCNL   E
Sbjct: 202 LHKLTLRNNFDSLNVMKTCIQGLAGLEVHRLVLGEFRNEGNLEKFDKSALEGLCNLTIEE 261

Query: 307 LSDTQVGSSGLR----------------------------HLSGLTNLESINLSFTGISD 338
                +                                  +  G  +LE +N  F     
Sbjct: 262 FRLAYLDYYLDDIIDLFNCLTNVSSFSLVSVTIERVKDFSYNFGWQHLELVNCKFGQFPT 321

Query: 339 GSLRKL----------------AGLSSLKSLNLDARQITDTGL--AALTSLTGLTHLDLF 380
             L+ L                  L SL+ L+L    ++  G    +    T L +LDL 
Sbjct: 322 LKLKSLKRLTFTSNKGGNAFSEVDLPSLEFLDLSRNGLSFKGCCSQSDFGTTSLKYLDLS 381

Query: 381 GARITDSGAAYLRNFKNLRSLEICGGGLTD-AGVKHIKDLSSLTLLNLSQNCNLTDKTLE 439
              +    +      + L  L+     L   +       L +L  L++S   +       
Sbjct: 382 FNGVITMSSN-FLGLEQLEHLDFQHSNLKQMSEFSVFLSLRNLIYLDISHT-HTRVAFNG 439

Query: 440 LISGLTGLVSLNVSNSRITS 459
           + +GL+ L  L ++ +    
Sbjct: 440 IFNGLSSLEVLKMAGNSFQE 459

>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens} Length = 570

 Score = 89.4 bits (222), Expect = 3e-19
 Identities = 74/372 (19%), Positives = 123/372 (33%), Gaps = 26/372 (6%)

Query: 72  SGLIHLKDCSNLQSLDFNFCIQISDGGLEHLRGLSNLTSLSFRRNNAITAQGMKAFAGLI 131
             L  +   +    L  N    I  G  + +     L  L+ R N            GL 
Sbjct: 170 RVLHQMPLLNLSLDLSLNPMNFIQPGAFKEI----RLHKLTLRNNFDSLNVMKTCIQGLA 225

Query: 132 NLVKLDLE--------RCTRIHGGLVNLKGLMKLESLNIKWCNCITDSDMKPLSGLTNLK 183
            L    L            +     +     + +E   + + +   D  +   + LTN+ 
Sbjct: 226 GLEVHRLVLGEFRNEGNLEKFDKSALEGLCNLTIEEFRLAYLDYYLDDIIDLFNCLTNVS 285

Query: 184 SLQISCSKVTD-SGIAYLKGLQKLTLLNLEGCPVTAACLDSLSALGSLFYLNLNRCQLSD 242
           S  +    +      +Y  G Q L L+N +        L SL        L     +  +
Sbjct: 286 SFSLVSVTIERVKDFSYNFGWQHLELVNCKFGQFPTLKLKSLK------RLTFTSNKGGN 339

Query: 243 DGCEKFSKIGSLKVLNLGFNEIT--DECLVHLKGLTNLESLNLDSCGIGDEGLVNLTGLC 300
                   + SL+ L+L  N ++    C     G T+L+ L+L   G+      N  GL 
Sbjct: 340 AFS--EVDLPSLEFLDLSRNGLSFKGCCSQSDFGTTSLKYLDLSFNGVITMS-SNFLGLE 396

Query: 301 NLKCLELSDTQVGS-SGLRHLSGLTNLESINLSFTGISDGSLRKLAGLSSLKSLNLDARQ 359
            L+ L+   + +   S       L NL  +++S T           GLSSL+ L +    
Sbjct: 397 QLEHLDFQHSNLKQMSEFSVFLSLRNLIYLDISHTHTRVAFNGIFNGLSSLEVLKMAGNS 456

Query: 360 ITDTGLA-ALTSLTGLTHLDLFGARITDSGAAYLRNFKNLRSLEICGGGLTDAGVKHIKD 418
             +  L    T L  LT LDL   ++         +  +L+ L +    L          
Sbjct: 457 FQENFLPDIFTELRNLTFLDLSQCQLEQLSPTAFNSLSSLQVLNMASNQLKSVPDGIFDR 516

Query: 419 LSSLTLLNLSQN 430
           L+SL  + L  N
Sbjct: 517 LTSLQKIWLHTN 528

>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens} Length = 570

 Score = 79.0 bits (195), Expect = 8e-16
 Identities = 62/308 (20%), Positives = 106/308 (34%), Gaps = 16/308 (5%)

Query: 166 NCITDSDMKPLSGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACLDSLS 225
           N +             L+ L +S  ++        + L  L+ L L G P+ +  L + S
Sbjct: 38  NPLRHLGSYSFFSFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNPIQSLALGAFS 97

Query: 226 ALGSLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVH-LKGLTNLESLNLD 284
            L SL  L      L+         + +LK LN+  N I    L      LTNLE L+L 
Sbjct: 98  GLSSLQKLVAVETNLASLENFPIGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLS 157

Query: 285 SCGIGDEGLVNLTGLCNLKC----LELSDTQVGSSGLRHLSGLTNLESINLSFTGISDGS 340
           S  I      +L  L  +      L+LS   +          +  L  + L     S   
Sbjct: 158 SNKIQSIYCTDLRVLHQMPLLNLSLDLSLNPMNFIQPGAFKEI-RLHKLTLRNNFDSLNV 216

Query: 341 LRK-LAGLSSLKSLNL------DARQITDTGLAALTSLTGLTHLDLFGARITDSGAAYLR 393
           ++  + GL+ L+   L      +   +     +AL  L  LT  +   A +       + 
Sbjct: 217 MKTCIQGLAGLEVHRLVLGEFRNEGNLEKFDKSALEGLCNLTIEEFRLAYLDYYLDDIID 276

Query: 394 NFKNLRSLEICGGGLTDAGVKHIKDLSSLTLLNLSQNCNLTDKTLELISGLTGLVSLNVS 453
            F  L ++      L    ++ +KD S        +  N        +  L  L  L  +
Sbjct: 277 LFNCLTNVSS--FSLVSVTIERVKDFSYNFGWQHLELVNCKFGQFPTLK-LKSLKRLTFT 333

Query: 454 NSRITSAG 461
           +++  +A 
Sbjct: 334 SNKGGNAF 341

>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens} Length = 570

 Score = 69.0 bits (169), Expect = 1e-12
 Identities = 66/343 (19%), Positives = 121/343 (35%), Gaps = 35/343 (10%)

Query: 20  LTEVSLEAFRDCALQDLCLGQYPGVNDKWMDVIASQGSSLLSVDLSGSDVTDSGLIHLKD 79
           +  +   AF++  L  L L       +     I    + L    L   +  + G +   D
Sbjct: 189 MNFIQPGAFKEIRLHKLTLRNNFDSLNVMKTCIQGL-AGLEVHRLVLGEFRNEGNLEKFD 247

Query: 80  CS--------NLQSLDFNFCIQISDGGLEHLRGLSNLTSLSFRRNNAITAQGMKAFAGLI 131
            S         ++     +     D  ++    L+N++S S         +      G  
Sbjct: 248 KSALEGLCNLTIEEFRLAYLDYYLDDIIDLFNCLTNVSSFSLVSVTIERVKDFSYNFGWQ 307

Query: 132 NLVKLDLERCTRIHGGLVNLK----------------GLMKLESLNIKWCNCITDSDMKP 175
           +L  ++ +        L +LK                 L  LE L++   N ++      
Sbjct: 308 HLELVNCKFGQFPTLKLKSLKRLTFTSNKGGNAFSEVDLPSLEFLDLS-RNGLSFKGCCS 366

Query: 176 LS--GLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACLDSLSA---LGSL 230
            S  G T+LK L +S + V     +   GL++L  L+ +   +    +   S    L +L
Sbjct: 367 QSDFGTTSLKYLDLSFNGVITMS-SNFLGLEQLEHLDFQHSNLKQ--MSEFSVFLSLRNL 423

Query: 231 FYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVH-LKGLTNLESLNLDSCGIG 289
            YL+++           F+ + SL+VL +  N   +  L      L NL  L+L  C + 
Sbjct: 424 IYLDISHTHTRVAFNGIFNGLSSLEVLKMAGNSFQENFLPDIFTELRNLTFLDLSQCQLE 483

Query: 290 DEGLVNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLS 332
                    L +L+ L ++  Q+ S        LT+L+ I L 
Sbjct: 484 QLSPTAFNSLSSLQVLNMASNQLKSVPDGIFDRLTSLQKIWLH 526

>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens} Length = 570

 Score = 49.7 bits (119), Expect = 1e-06
 Identities = 30/115 (26%), Positives = 45/115 (39%), Gaps = 1/115 (0%)

Query: 348 SSLKSLNLDARQITDTGLAALTSLTGLTHLDLFGARITDSGAAYLRNFKNLRSLEICGGG 407
            S K+L+L    +   G  +  S   L  LDL    I        ++  +L +L + G  
Sbjct: 28  FSTKNLDLSFNPLRHLGSYSFFSFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNP 87

Query: 408 LTDAGVKHIKDLSSLTLLNLSQNCNLTDKTLELISGLTGLVSLNVSNSRITSAGL 462
           +    +     LSSL  L   +  NL       I  L  L  LNV+++ I S  L
Sbjct: 88  IQSLALGAFSGLSSLQKLVAVET-NLASLENFPIGHLKTLKELNVAHNLIQSFKL 141

>3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae} Length = 390

 Score = 97.4 bits (243), Expect = 3e-22
 Identities = 57/350 (16%), Positives = 108/350 (30%), Gaps = 25/350 (7%)

Query: 83  LQSLDFNFCIQISDGGLEHLRGLSNLTSLSFRRNNAITAQGMKAFAGLINLVKLDLERC- 141
              +  +   Q    G E +  L+N   ++F+ +  +             +  L+L    
Sbjct: 23  FYDVHIDMQTQDVYFGFEDIT-LNNQKIVTFKNST-MRKLPAALLDSFRQVELLNLNDLQ 80

Query: 142 -TRIHGGLVNLKGLMKLESLNIKWCNCITDSDMKPLSGLTNLKSLQISCSKVTDSGIAYL 200
              I            ++ L +   N I          +  L  L +  + ++       
Sbjct: 81  IEEIDTYA--FAYAHTIQKLYM-GFNAIRYLPPHVFQNVPLLTVLVLERNDLSSLPRGIF 137

Query: 201 KGLQKLTLLNLEGCPVTAACLDSLSALGSLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLG 260
               KLT L++    +     D+  A  SL  L L+  +L+       S I SL   N+ 
Sbjct: 138 HNTPKLTTLSMSNNNLERIEDDTFQATTSLQNLQLSSNRLTHVD---LSLIPSLFHANVS 194

Query: 261 FNEITDECLVHLKGLTNLESLNLDSCGIGDEGLVNLTGLCNLKCLELSDTQVGSSGLRHL 320
           +N ++      L     +E L+     I     V       L  L+L    +  +    L
Sbjct: 195 YNLLST-----LAIPIAVEELDASHNSINV---VRGPVNVELTILKLQHNNLTDTAW--L 244

Query: 321 SGLTNLESINLSFTGISDGSLRKLAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLF 380
                L  ++LS+  +          +  L+ L +   ++          +  L  LDL 
Sbjct: 245 LNYPGLVEVDLSYNELEKIMYHPFVKMQRLERLYISNNRLVALN-LYGQPIPTLKVLDLS 303

Query: 381 GARITDSGAAYLRNFKNLRSLEICGGGLTDAGVKHIKDLSSLTLLNLSQN 430
              +          F  L +L +    +       +    +L  L LS N
Sbjct: 304 HNHLLHVERN-QPQFDRLENLYLDHNSIVTL---KLSTHHTLKNLTLSHN 349

>3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae} Length = 390

 Score = 70.1 bits (172), Expect = 3e-13
 Identities = 30/198 (15%), Positives = 65/198 (32%), Gaps = 15/198 (7%)

Query: 275 LTNLESLNLDSCGIGDEGLVNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSFT 334
           L N + +   +  +       L     ++ L L+D Q+        +    ++ + + F 
Sbjct: 44  LNNQKIVTFKNSTMRKLPAALLDSFRQVELLNLNDLQIEEIDTYAFAYAHTIQKLYMGFN 103

Query: 335 GISDGSLRKLAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLFGARITDSGAAYLRN 394
            I          +  L  L L+   ++        +   LT L +    +        + 
Sbjct: 104 AIRYLPPHVFQNVPLLTVLVLERNDLSSLPRGIFHNTPKLTTLSMSNNNLERIEDDTFQA 163

Query: 395 FKNLRSLEICGGGLTDAGVKHIKDLSSLTLLNLSQNCNLTDKTLELISGLTGLVSLNVSN 454
             +L++L++    LT      +  + SL   N+S N       L  ++    +  L+ S+
Sbjct: 164 TTSLQNLQLSSNRLTHV---DLSLIPSLFHANVSYNL------LSTLAIPIAVEELDASH 214

Query: 455 SRITS------AGLRHLN 466
           + I          L  L 
Sbjct: 215 NSINVVRGPVNVELTILK 232

>3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae} Length = 390

 Score = 51.2 bits (123), Expect = 4e-07
 Identities = 20/140 (14%), Positives = 49/140 (35%), Gaps = 1/140 (0%)

Query: 320 LSGLTNLESINLSFTGISDGSLRKLAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDL 379
           L        +++           +   L++ K +      +     A L S   +  L+L
Sbjct: 17  LQYDCVFYDVHIDMQTQDVYFGFEDITLNNQKIVTFKNSTMRKLPAALLDSFRQVELLNL 76

Query: 380 FGARITDSGAAYLRNFKNLRSLEICGGGLTDAGVKHIKDLSSLTLLNLSQNCNLTDKTLE 439
              +I +           ++ L +    +        +++  LT+L L +N +L+     
Sbjct: 77  NDLQIEEIDTYAFAYAHTIQKLYMGFNAIRYLPPHVFQNVPLLTVLVLERN-DLSSLPRG 135

Query: 440 LISGLTGLVSLNVSNSRITS 459
           +      L +L++SN+ +  
Sbjct: 136 IFHNTPKLTTLSMSNNNLER 155

>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae} Length = 597

 Score = 96.5 bits (240), Expect = 2e-21
 Identities = 65/369 (17%), Positives = 127/369 (34%), Gaps = 33/369 (8%)

Query: 106 SNLTSLSFRRNNAITAQGMKAFAG-----LINLVKLDLERC--TRIHGGLVNLKGLMKLE 158
           SNL       +  I  Q    + G     L N   +  +     ++   L  L    ++E
Sbjct: 21  SNLQYDCVFYDVHIDMQTQDVYFGFEDITLNNQKIVTFKNSTMRKLPAAL--LDSFRQVE 78

Query: 159 SLNIKWCNCITDSDMKPLSGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTA 218
            LN+     I + D    +    ++ L +  + +        + +  LT+L LE   +++
Sbjct: 79  LLNLND-LQIEEIDTYAFAYAHTIQKLYMGFNAIRYLPPHVFQNVPLLTVLVLERNDLSS 137

Query: 219 ACLDSLSALGSLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNL 278
                      L  L+++   L     + F    SL+ L L  N +T    V L  + +L
Sbjct: 138 LPRGIFHNTPKLTTLSMSNNNLERIEDDTFQATTSLQNLQLSSNRLTH---VDLSLIPSL 194

Query: 279 ESLNLDSCGIGDEGLVNLTGLCNLKCLELSDTQVGSSGLRHLSG--LTNLESINLSFTGI 336
              N+    +       L     ++ L+ S        +  + G     L  + L    +
Sbjct: 195 FHANVSYNLLS-----TLAIPIAVEELDASHNS-----INVVRGPVNVELTILKLQHNNL 244

Query: 337 SDGSLRKLAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLFGARITDSGAAYLRNFK 396
           +D     L     L  ++L   ++          +  L  L +   R+  +   Y +   
Sbjct: 245 TD--TAWLLNYPGLVEVDLSYNELEKIMYHPFVKMQRLERLYISNNRLV-ALNLYGQPIP 301

Query: 397 NLRSLEICGGGLTDAGVKHIKDLSSLTLLNLSQNCNLTDKTLELISGLTGLVSLNVSNSR 456
            L+ L++    L     ++      L  L L  N ++   TL+ +S    L +L +S++ 
Sbjct: 302 TLKVLDLSHNHLLHVE-RNQPQFDRLENLYLDHN-SIV--TLK-LSTHHTLKNLTLSHND 356

Query: 457 ITSAGLRHL 465
                LR L
Sbjct: 357 WDCNSLRAL 365

>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae} Length = 597

 Score = 86.1 bits (213), Expect = 4e-18
 Identities = 58/426 (13%), Positives = 129/426 (30%), Gaps = 61/426 (14%)

Query: 57  SSLLSVDLSGSDVTDSGLIHLKDCSNLQSLDFNFCIQISDGGLEHLRGLSNLTSLSFRRN 116
             +  ++L+   + +           +Q L   F   I        + +  LT L     
Sbjct: 75  RQVELLNLNDLQIEEIDTYAFAYAHTIQKLYMGFN-AIRYLPPHVFQNVPLLTVLVL-ER 132

Query: 117 NAITAQGMKAFAGLINLVKLDLERCTRIHGGLVNLKGLMKLESLNIKWCNCITDSDMKPL 176
           N +++     F     L  L +                           N +   +    
Sbjct: 133 NDLSSLPRGIFHNTPKLTTLSMSN-------------------------NNLERIEDDTF 167

Query: 177 SGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACLDSLSALGSLFYLNLN 236
              T+L++LQ+S +++T   ++ +  L    +            L +L+   ++  L+ +
Sbjct: 168 QATTSLQNLQLSSNRLTHVDLSLIPSLFHANVSYNL--------LSTLAIPIAVEELDAS 219

Query: 237 RCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNLDSCGIGDEGLVNL 296
              ++            L +L L  N +TD     L     L  ++L    +        
Sbjct: 220 HNSINVVRGPVNV---ELTILKLQHNNLTD--TAWLLNYPGLVEVDLSYNELEKIMYHPF 274

Query: 297 TGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISDGSLRKLAGLSSLKSLNLD 356
             +  L+ L +S+ ++  +   +   +  L+ ++LS   +     R       L++L LD
Sbjct: 275 VKMQRLERLYISNNRL-VALNLYGQPIPTLKVLDLSHNHLLHVE-RNQPQFDRLENLYLD 332

Query: 357 ARQITDTGLAALTSLTGLTHLDLFGARIT-DSGAAYLRNFKNLRSLEI------------ 403
              I       L++   L +L L       +S  A  RN       +             
Sbjct: 333 HNSIVT---LKLSTHHTLKNLTLSHNDWDCNSLRALFRNVARPAVDDADQHCKIDYQLEH 389

Query: 404 ---CGGGLTDAGVKHIKDLSSLTLLNLSQNCNLTDKTLELISGLTGLVSLNVSNSRITSA 460
              C         + ++ ++  +++   Q         + I+ +  L         +   
Sbjct: 390 GLCCKESDKPYLDRLLQYIALTSVVEKVQRAQGRCSATDTINSVQSLSHYITQQGGVPLQ 449

Query: 461 GLRHLN 466
           G   L 
Sbjct: 450 GNEQLE 455

>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae} Length = 597

 Score = 68.4 bits (167), Expect = 2e-12
 Identities = 30/198 (15%), Positives = 65/198 (32%), Gaps = 15/198 (7%)

Query: 275 LTNLESLNLDSCGIGDEGLVNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSFT 334
           L N + +   +  +       L     ++ L L+D Q+        +    ++ + + F 
Sbjct: 50  LNNQKIVTFKNSTMRKLPAALLDSFRQVELLNLNDLQIEEIDTYAFAYAHTIQKLYMGFN 109

Query: 335 GISDGSLRKLAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLFGARITDSGAAYLRN 394
            I          +  L  L L+   ++        +   LT L +    +        + 
Sbjct: 110 AIRYLPPHVFQNVPLLTVLVLERNDLSSLPRGIFHNTPKLTTLSMSNNNLERIEDDTFQA 169

Query: 395 FKNLRSLEICGGGLTDAGVKHIKDLSSLTLLNLSQNCNLTDKTLELISGLTGLVSLNVSN 454
             +L++L++    LT      +  + SL   N+S N       L  ++    +  L+ S+
Sbjct: 170 TTSLQNLQLSSNRLTHV---DLSLIPSLFHANVSYNL------LSTLAIPIAVEELDASH 220

Query: 455 SRITS------AGLRHLN 466
           + I          L  L 
Sbjct: 221 NSINVVRGPVNVELTILK 238

>3v47_A TOLL-like receptor 5B and variable lymphocyte REC chimeric protein; innate immunity, leucine-rich repeat, innate immune receptor system; HET: NAG; 2.47A {Danio rerio} PDB: 3v44_A* Length = 455

 Score = 94.4 bits (235), Expect = 4e-21
 Identities = 69/380 (18%), Positives = 128/380 (33%), Gaps = 34/380 (8%)

Query: 81  SNLQSLDFNFCIQISDGGLEHLRGLSNLTSLSFRRNNAITAQGMKAFAGLINLVKLDLER 140
           +++  +D +    I++        L +L  L   +           F GL +L+ L L+ 
Sbjct: 30  AHVNYVDLSLN-SIAELNETSFSRLQDLQFLKVEQQTPGLVIRNNTFRGLSSLIILKLDY 88

Query: 141 C--TRIHGGLVNLKGLMKLESLNIKWCNCITDSDMKP--LSGLTNLKSLQISCSKVTD-S 195
               ++  G     GL  LE L +     +  + +       LT+L+ L +  + +    
Sbjct: 89  NQFLQLETGA--FNGLANLEVLTLTQ-CNLDGAVLSGNFFKPLTSLEMLVLRDNNIKKIQ 145

Query: 196 GIAYLKGLQKLTLLNLEGCPVTAACLDSLSALGSLF----------YLNLNRCQLSDDGC 245
             ++   +++  +L+L    V + C + L                   ++N   L  + C
Sbjct: 146 PASFFLNMRRFHVLDLTFNKVKSICEEDLLNFQGKHFTLLRLSSITLQDMNEYWLGWEKC 205

Query: 246 EKFSKIGSLKVLNLGFNEIT---DECLVHLKGLTNLESLNLDSCGIGDEGLVNLTGLC-- 300
               K  S+  L+L  N       +        T ++SL L +         +       
Sbjct: 206 GNPFKNTSITTLDLSGNGFKESMAKRFFDAIAGTKIQSLILSNSYNMGSSFGHTNFKDPD 265

Query: 301 ----------NLKCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISDGSLRKLAGLSSL 350
                      +K  +LS +++ +      S  T+LE + L+   I+        GL+ L
Sbjct: 266 NFTFKGLEASGVKTCDLSKSKIFALLKSVFSHFTDLEQLTLAQNEINKIDDNAFWGLTHL 325

Query: 351 KSLNLDARQITDTGLAALTSLTGLTHLDLFGARITDSGAAYLRNFKNLRSLEICGGGLTD 410
             LNL    +         +L  L  LDL    I   G        NL+ L +    L  
Sbjct: 326 LKLNLSQNFLGSIDSRMFENLDKLEVLDLSYNHIRALGDQSFLGLPNLKELALDTNQLKS 385

Query: 411 AGVKHIKDLSSLTLLNLSQN 430
                   L+SL  + L  N
Sbjct: 386 VPDGIFDRLTSLQKIWLHTN 405

>3v47_A TOLL-like receptor 5B and variable lymphocyte REC chimeric protein; innate immunity, leucine-rich repeat, innate immune receptor system; HET: NAG; 2.47A {Danio rerio} PDB: 3v44_A* Length = 455

 Score = 78.2 bits (193), Expect = 1e-15
 Identities = 59/327 (18%), Positives = 108/327 (33%), Gaps = 33/327 (10%)

Query: 151 LKGLMKLESLNIKWCNCITDSDMKPLSGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLN 210
              L  L+ L ++              GL++L  L++  ++          GL  L +L 
Sbjct: 50  FSRLQDLQFLKVEQQTPGLVIRNNTFRGLSSLIILKLDYNQFLQLETGAFNGLANLEVLT 109

Query: 211 LEGCPVTAACL--DSLSALGSLFYLNLNRCQLSD-DGCEKFSKIGSLKVLNLGFNEITDE 267
           L  C +  A L  +    L SL  L L    +        F  +    VL+L FN++   
Sbjct: 110 LTQCNLDGAVLSGNFFKPLTSLEMLVLRDNNIKKIQPASFFLNMRRFHVLDLTFNKVKSI 169

Query: 268 CLVHLKGLTNLESLNLDSCGIGDEGLVNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLE 327
           C   L          L               L ++   ++++  +G     +    T++ 
Sbjct: 170 CEEDLLNFQGKHFTLLR--------------LSSITLQDMNEYWLGWEKCGNPFKNTSIT 215

Query: 328 SINLS---FTGISDGSLRKLAGLSSLKSLNLDARQITDTGLAALT------------SLT 372
           +++LS   F              + ++SL L       +                    +
Sbjct: 216 TLDLSGNGFKESMAKRFFDAIAGTKIQSLILSNSYNMGSSFGHTNFKDPDNFTFKGLEAS 275

Query: 373 GLTHLDLFGARITDSGAAYLRNFKNLRSLEICGGGLTDAGVKHIKDLSSLTLLNLSQNCN 432
           G+   DL  ++I     +   +F +L  L +    +          L+ L  LNLSQN  
Sbjct: 276 GVKTCDLSKSKIFALLKSVFSHFTDLEQLTLAQNEINKIDDNAFWGLTHLLKLNLSQN-F 334

Query: 433 LTDKTLELISGLTGLVSLNVSNSRITS 459
           L      +   L  L  L++S + I +
Sbjct: 335 LGSIDSRMFENLDKLEVLDLSYNHIRA 361

>3v47_A TOLL-like receptor 5B and variable lymphocyte REC chimeric protein; innate immunity, leucine-rich repeat, innate immune receptor system; HET: NAG; 2.47A {Danio rerio} PDB: 3v44_A* Length = 455

 Score = 69.4 bits (170), Expect = 6e-13
 Identities = 50/266 (18%), Positives = 86/266 (32%), Gaps = 30/266 (11%)

Query: 223 SLSALGSLFYLNLNRCQLSDD-GCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESL 281
           S S L  L +L + +           F  + SL +L L +N+          GL NLE L
Sbjct: 49  SFSRLQDLQFLKVEQQTPGLVIRNNTFRGLSSLIILKLDYNQFLQLETGAFNGLANLEVL 108

Query: 282 NLDSCGIGDEGLVN--LTGLCNLKCLELSDTQVGSSGLRHL-SGLTNLESINLS---FTG 335
            L  C +    L       L +L+ L L D  +           +     ++L+      
Sbjct: 109 TLTQCNLDGAVLSGNFFKPLTSLEMLVLRDNNIKKIQPASFFLNMRRFHVLDLTFNKVKS 168

Query: 336 ISDGSLRKLAG-------LSSLKSLNLDARQITDTGLAALTSLTGLTHLDLFGARITDSG 388
           I +  L    G       LSS+   +++   +           T +T LDL G    +S 
Sbjct: 169 ICEEDLLNFQGKHFTLLRLSSITLQDMNEYWLGWEKCGNPFKNTSITTLDLSGNGFKESM 228

Query: 389 AAYLRNFKNLRSLE--------ICGGGLTDAGVKHIKDL-------SSLTLLNLSQNCNL 433
           A    +      ++          G        K   +        S +   +LS++  +
Sbjct: 229 AKRFFDAIAGTKIQSLILSNSYNMGSSFGHTNFKDPDNFTFKGLEASGVKTCDLSKS-KI 287

Query: 434 TDKTLELISGLTGLVSLNVSNSRITS 459
                 + S  T L  L ++ + I  
Sbjct: 288 FALLKSVFSHFTDLEQLTLAQNEINK 313

>2ca6_A RAN GTPase-activating protein 1; GAP, GTPase activation, hemihedral twinning, leucine-rich repeat protein, LRR, merohedral twinning; 2.2A {Schizosaccharomyces pombe} SCOP: c.10.1.2 PDB: 1k5g_C* 1k5d_C 1yrg_A Length = 386

 Score = 93.2 bits (232), Expect = 6e-21
 Identities = 47/330 (14%), Positives = 95/330 (28%), Gaps = 66/330 (20%)

Query: 58  SLLSVDLSGSDVTDSGLIH----LKDCSNLQSLDFNFCIQISDGGLEH----LRGLSNLT 109
           S+    L    +T          L +  +++ +  +    I           +    +L 
Sbjct: 5   SIEGKSLKLDAITTEDEKSVFAVLLEDDSVKEIVLSGN-TIGTEAARWLSENIASKKDLE 63

Query: 110 SLSFRRNNAITAQGMKAFAGLINLVKLDLERCTRIHGGLVNLKGLMKLESLNIKWCNCIT 169
              F  +        +    L  L++               L    KL ++ +   N   
Sbjct: 64  IAEFS-DIFTGRVKDEIPEALRLLLQA--------------LLKCPKLHTVRL-SDNAFG 107

Query: 170 DSDMKPLSGL----TNLKSLQISCSKVTDSGIAYL-------------KGLQKLTLLNLE 212
            +  +PL       T L+ L +  + +     A +             K    L  +   
Sbjct: 108 PTAQEPLIDFLSKHTPLEHLYLHNNGLGPQAGAKIARALQELAVNKKAKNAPPLRSIICG 167

Query: 213 GCPVTAACL----DSLSALGSLFYLNLNRCQLSDDGCEK-----FSKIGSLKVLNLGFNE 263
              +    +     +  +   L  + + +  +  +G E       +    LKVL+L  N 
Sbjct: 168 RNRLENGSMKEWAKTFQSHRLLHTVKMVQNGIRPEGIEHLLLEGLAYCQELKVLDLQDNT 227

Query: 264 ITDECLVH----LKGLTNLESLNLDSCGIGDEGLVNL------TGLCNLKCLELSDTQVG 313
            T          LK   NL  L L+ C +   G   +           L+ L L   ++ 
Sbjct: 228 FTHLGSSALAIALKSWPNLRELGLNDCLLSARGAAAVVDAFSKLENIGLQTLRLQYNEIE 287

Query: 314 SSGLRHL-----SGLTNLESINLSFTGISD 338
              +R L       + +L  + L+    S+
Sbjct: 288 LDAVRTLKTVIDEKMPDLLFLELNGNRFSE 317

>2ca6_A RAN GTPase-activating protein 1; GAP, GTPase activation, hemihedral twinning, leucine-rich repeat protein, LRR, merohedral twinning; 2.2A {Schizosaccharomyces pombe} SCOP: c.10.1.2 PDB: 1k5g_C* 1k5d_C 1yrg_A Length = 386

 Score = 85.9 bits (213), Expect = 2e-18
 Identities = 44/247 (17%), Positives = 76/247 (30%), Gaps = 49/247 (19%)

Query: 253 SLKVLNLGFNEITDECLVH----LKGLTNLESLNLDSCGIGDEGLVN----LTGLCNLKC 304
           S++  +L  + IT E        L    +++ + L    IG E        +    +L+ 
Sbjct: 5   SIEGKSLKLDAITTEDEKSVFAVLLEDDSVKEIVLSGNTIGTEAARWLSENIASKKDLEI 64

Query: 305 LELSDTQVGSSGLRHLSGLTNLESINLSFTGISDGSLRKLAGLSSLKSLNLDARQITDTG 364
            E SD   G         L  L              L+ L     L ++ L       T 
Sbjct: 65  AEFSDIFTGRVKDEIPEALRLL--------------LQALLKCPKLHTVRLSDNAFGPTA 110

Query: 365 LAALTSL----TGLTHLDLFGARITDSGAAYL-------------RNFKNLRSLEICGGG 407
              L       T L HL L    +     A +             +N   LRS+      
Sbjct: 111 QEPLIDFLSKHTPLEHLYLHNNGLGPQAGAKIARALQELAVNKKAKNAPPLRSIICGRNR 170

Query: 408 LTDAGVKHI----KDLSSLTLLNLSQNCNLTDKTL-----ELISGLTGLVSLNVSNSRIT 458
           L +  +K      +    L  + + QN  +  + +     E ++    L  L++ ++  T
Sbjct: 171 LENGSMKEWAKTFQSHRLLHTVKMVQN-GIRPEGIEHLLLEGLAYCQELKVLDLQDNTFT 229

Query: 459 SAGLRHL 465
             G   L
Sbjct: 230 HLGSSAL 236

>2ca6_A RAN GTPase-activating protein 1; GAP, GTPase activation, hemihedral twinning, leucine-rich repeat protein, LRR, merohedral twinning; 2.2A {Schizosaccharomyces pombe} SCOP: c.10.1.2 PDB: 1k5g_C* 1k5d_C 1yrg_A Length = 386

 Score = 77.8 bits (192), Expect = 8e-16
 Identities = 46/296 (15%), Positives = 87/296 (29%), Gaps = 79/296 (26%)

Query: 33  LQDLCLGQYPGVNDKWMDVIAS---QGSSLLSVDLSGSDVTDSGLIH----LKDCSNLQS 85
             D+  G+      + + ++     +   L +V LS +    +        L   + L+ 
Sbjct: 67  FSDIFTGRVKDEIPEALRLLLQALLKCPKLHTVRLSDNAFGPTAQEPLIDFLSKHTPLEH 126

Query: 86  LDFNFCIQISDGGLEHL-------------RGLSNLTSLSFRRNNAITAQGMKAFAGLIN 132
           L  +    +       +             +    L S+   RN  +    MK +A    
Sbjct: 127 LYLHNN-GLGPQAGAKIARALQELAVNKKAKNAPPLRSIICGRNR-LENGSMKEWAKT-- 182

Query: 133 LVKLDLERCTRIHGGLVNLKGLMKLESLNIKWCNCITDSDMKP-----LSGLTNLKSLQI 187
                              +    L ++ +   N I    ++      L+    LK L +
Sbjct: 183 ------------------FQSHRLLHTVKM-VQNGIRPEGIEHLLLEGLAYCQELKVLDL 223

Query: 188 SCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACLDSLSALGSLFYLNLNRCQLSDDGCEK 247
             +  T  G + L                      +L +  +L  L LN C LS  G   
Sbjct: 224 QDNTFTHLGSSALA--------------------IALKSWPNLRELGLNDCLLSARGAAA 263

Query: 248 FSKI------GSLKVLNLGFNEITDECLVHL-----KGLTNLESLNLDSCGIGDEG 292
                       L+ L L +NEI  + +  L     + + +L  L L+     +E 
Sbjct: 264 VVDAFSKLENIGLQTLRLQYNEIELDAVRTLKTVIDEKMPDLLFLELNGNRFSEED 319

>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron} Length = 876

 Score = 94.2 bits (234), Expect = 1e-20
 Identities = 54/440 (12%), Positives = 114/440 (25%), Gaps = 39/440 (8%)

Query: 48  WMDVIASQGSSLLSVDLSGSDVTDSGLIHLKDCSNLQSLDFNFCIQISDGGLEHLRGLSN 107
              V       +  + L+G          +   + L+ L F      +  G         
Sbjct: 314 QPGVDLDNNGRVTGLSLAGFGAKGRVPDAIGQLTELKVLSFGTH-SETVSGRLFGDEELT 372

Query: 108 LTSLSFRRNNAITAQGMKAFAGLINLVKLDLERCTRIH----GGLVNLKGLMKLESLNIK 163
                 R++                L   DL +           +     +   ++    
Sbjct: 373 PDMSEERKHRIRMHYKKMFLDYDQRLNLSDLLQDAINRNPEMKPIKKDSRISLKDTQIGN 432

Query: 164 WCNCITDSDMKPLSGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACLDS 223
             N IT    K +  LT L+ +  + S        Y          N +          S
Sbjct: 433 LTNRITFIS-KAIQRLTKLQIIYFANSP-----FTYDNIAVDWEDANSDYAKQYENEELS 486

Query: 224 LSALGSLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVH---------LKG 274
            S L  L  + L  C       +    +  L+ LN+  N       +             
Sbjct: 487 WSNLKDLTDVELYNCPNMTQLPDFLYDLPELQSLNIACNRGISAAQLKADWTRLADDEDT 546

Query: 275 LTNLESLNLDSC---GIGDEGLVNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINL 331
              ++   +              +L  +  L  L+    +V    L        L  + L
Sbjct: 547 GPKIQIFYMGYNNLEEFPASA--SLQKMVKLGLLDCVHNKV--RHLEAFGTNVKLTDLKL 602

Query: 332 SFTGISDGSLRKLAGLSSLKSLNLDARQITD-TGLAALTSLTGLTHLDLFGARITD---- 386
            +  I +      A    ++ L     ++     +    S+  +  +D    +I      
Sbjct: 603 DYNQIEEIPEDFCAFTDQVEGLGFSHNKLKYIPNIFNAKSVYVMGSVDFSYNKIGSEGRN 662

Query: 387 -SGAAYLRNFKNLRSLEICGGGLTDAGVKHIKDLSSLTLLNLSQNC------NLTDKTLE 439
            S +       N  ++ +    +     +     S ++ + LS N       N       
Sbjct: 663 ISCSMDDYKGINASTVTLSYNEIQKFPTELFATGSPISTIILSNNLMTSIPENSLKPKDG 722

Query: 440 LISGLTGLVSLNVSNSRITS 459
                  L ++++  +++TS
Sbjct: 723 NYKNTYLLTTIDLRFNKLTS 742

>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron} Length = 876

 Score = 91.1 bits (226), Expect = 1e-19
 Identities = 51/411 (12%), Positives = 124/411 (30%), Gaps = 62/411 (15%)

Query: 77  LKDCSNLQSLDFNFCIQISDGGLEHLRGLSNLTSLSFRRNNAITAQGMKAFAGLINLVKL 136
           ++  + LQ +        ++    +     +    +         +   +++ L +L  +
Sbjct: 444 IQRLTKLQIIY------FANSPFTYDNIAVDWEDANSDYAKQYENEE-LSWSNLKDLTDV 496

Query: 137 DLERCTRIH------GGLVNLKGLM----KLESLNIKWCNCITDSDMKPLSGLTNLKSLQ 186
           +L  C  +         L  L+ L     +  S      +    +D         ++   
Sbjct: 497 ELYNCPNMTQLPDFLYDLPELQSLNIACNRGISAAQLKADWTRLADD--EDTGPKIQIFY 554

Query: 187 ISCSKVTDSGI-AYLKGLQKLTLLNLEGCPVTAACLDSLSALGSLFYLNLNRCQLSDDGC 245
           +  + + +    A L+ + KL LL+     V    L++      L  L L+  Q+ +   
Sbjct: 555 MGYNNLEEFPASASLQKMVKLGLLDCVHNKVRH--LEAFGTNVKLTDLKLDYNQIEEIPE 612

Query: 246 EKFSKIGSLKVLNLGFNEITD-ECLVHLKGLTNLESLNLDSCGIGDEGLVNLTGLCNLKC 304
           +  +    ++ L    N++     + + K +  + S++     IG EG      + + K 
Sbjct: 613 DFCAFTDQVEGLGFSHNKLKYIPNIFNAKSVYVMGSVDFSYNKIGSEGRNISCSMDDYK- 671

Query: 305 LELSDTQVGSSGLRHLSGLTNLESINLS---FTGISDGSLRKLAGLSSLKSLNLDARQIT 361
                               N  ++ LS                  S + ++ L    +T
Sbjct: 672 ------------------GINASTVTLSYNEIQKFPTELFATG---SPISTIILSNNLMT 710

Query: 362 D-------TGLAALTSLTGLTHLDLFGARITD-SGAAYLRNFKNLRSLEICGGGLTDAGV 413
                          +   LT +DL   ++T  S          L ++++     +    
Sbjct: 711 SIPENSLKPKDGNYKNTYLLTTIDLRFNKLTSLSDDFRATTLPYLSNMDVSYNCFSSF-P 769

Query: 414 KHIKDLSSLTLLNLSQNCNLTDKTL-----ELISGLTGLVSLNVSNSRITS 459
               + S L    +    +     +       I+    L+ L + ++ I  
Sbjct: 770 TQPLNSSQLKAFGIRHQRDAEGNRILRQWPTGITTCPSLIQLQIGSNDIRK 820

>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron} Length = 876

 Score = 70.7 bits (173), Expect = 4e-13
 Identities = 30/334 (8%), Positives = 86/334 (25%), Gaps = 36/334 (10%)

Query: 77  LKDCSNLQSLDFNFCIQISDGGLE-HLRGLSNLTSLSFRRNNAITAQGMKAFAGLINLVK 135
                 +Q     +   + +      L+ +  L  L    N  +    ++AF   + L  
Sbjct: 544 EDTGPKIQIFYMGYN-NLEEFPASASLQKMVKLGLLDCVHNK-VRH--LEAFGTNVKLTD 599

Query: 136 LDLERC--TRIHGGLVNLKGLMKLESLNIKWCNCITDSDMKPLSGLTNLKSLQISC---S 190
           L L+      I           ++E L           ++     +  + S+  S     
Sbjct: 600 LKLDYNQIEEIPEDF--CAFTDQVEGLGFSHNKLKYIPNIFNAKSVYVMGSVDFSYNKIG 657

Query: 191 KVTDSGIAYLKGLQ--KLTLLNLEGCPVTAACLDSLSALGSLFYLNLNRCQLSD------ 242
               +    +   +    + + L    +     +  +    +  + L+   ++       
Sbjct: 658 SEGRNISCSMDDYKGINASTVTLSYNEIQKFPTELFATGSPISTIILSNNLMTSIPENSL 717

Query: 243 -DGCEKFSKIGSLKVLNLGFNEITDECL-VHLKGLTNLESLNLDSCGIGD-----EGLVN 295
                 +     L  ++L FN++T          L  L ++++                 
Sbjct: 718 KPKDGNYKNTYLLTTIDLRFNKLTSLSDDFRATTLPYLSNMDVSYNCFSSFPTQPLNSSQ 777

Query: 296 LTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLS---FTGISDGSLRKLAGLSSLKS 352
           L         +    ++       ++   +L  + +       + +           L  
Sbjct: 778 LKAFGIRHQRDAEGNRILRQWPTGITTCPSLIQLQIGSNDIRKVDEKLT------PQLYI 831

Query: 353 LNLDARQITDTGLAALTSLTGLTHLDLFGARITD 386
           L++         + ++          L   +  D
Sbjct: 832 LDIADNPNISIDVTSVCPYIEAGMYVLLYDKTQD 865

>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron} Length = 876

 Score = 67.2 bits (164), Expect = 5e-12
 Identities = 43/289 (14%), Positives = 88/289 (30%), Gaps = 29/289 (10%)

Query: 200 LKGLQKLTLLNLEGCPVTAACLDSLSALGSLFYLNLNRCQLSDDGCEKFSKIGSLKVLNL 259
           L    ++T L+L G        D++  L  L  L+      +  G     +  +  +   
Sbjct: 319 LDNNGRVTGLSLAGFGAKGRVPDAIGQLTELKVLSFGTHSETVSGRLFGDEELTPDMSEE 378

Query: 260 GFNEITDE-CLVHLKGLTNLESLNLDSCGIGDEGLVNLTGLCNLKCLELSDTQVGSSGLR 318
             + I      + L     L   +L    I       +  +     + L DTQ+G+   R
Sbjct: 379 RKHRIRMHYKKMFLDYDQRLNLSDLLQDAI--NRNPEMKPIKKDSRISLKDTQIGNLTNR 436

Query: 319 ------HLSGLTNLESINLSFTGISDGSLRKLAGLSSLKSLNLDARQITDTGLAALTSLT 372
                  +  LT L+ I  +     +            +  N D  +  +    + ++L 
Sbjct: 437 ITFISKAIQRLTKLQIIYFA-----NSPFTYDNIAVDWEDANSDYAKQYENEELSWSNLK 491

Query: 373 GLTHLDLFGARITDSGAAYLRNFKNLRSLEICGGGLTDAGVKH---------IKDLSSLT 423
            LT ++L+          +L +   L+SL I       A                   + 
Sbjct: 492 DLTDVELYNCPNMTQLPDFLYDLPELQSLNIACNRGISAAQLKADWTRLADDEDTGPKIQ 551

Query: 424 LLNLSQNCNLTDKTLEL-ISGLTGLVSLNVSNSRITS----AGLRHLNH 467
           +  +  N NL +      +  +  L  L+  ++++           L  
Sbjct: 552 IFYMGYN-NLEEFPASASLQKMVKLGLLDCVHNKVRHLEAFGTNVKLTD 599

>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron} Length = 876

 Score = 64.5 bits (157), Expect = 3e-11
 Identities = 38/332 (11%), Positives = 98/332 (29%), Gaps = 34/332 (10%)

Query: 54  SQGSSLLSVDLSGSDVTDSGL-IHLKDCSNLQSLDFNFCIQISDGGLEHLRGLSNLTSLS 112
             G  +    +  +++ +      L+    L  LD     ++    LE       LT L 
Sbjct: 545 DTGPKIQIFYMGYNNLEEFPASASLQKMVKLGLLDCVHN-KVRH--LEAFGTNVKLTDLK 601

Query: 113 FRRNNAITAQGMKAFAGLINLVKLDLERCTRIHG--GLVNLKGLMKLESLNIKWCNCITD 170
              N  I        A    +  L      ++     + N K +  + S++  + N I  
Sbjct: 602 LDYNQ-IEEIPEDFCAFTDQVEGLGFSHN-KLKYIPNIFNAKSVYVMGSVDFSY-NKIGS 658

Query: 171 -----SDMKPLSGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTA------- 218
                S         N  ++ +S +++             ++ + L    +T+       
Sbjct: 659 EGRNISCSMDDYKGINASTVTLSYNEIQKFPTELFATGSPISTIILSNNLMTSIPENSLK 718

Query: 219 ACLDSLSALGSLFYLNLNRCQLSD-DGCEKFSKIGSLKVLNLGFNEITD--ECLVHLKGL 275
               +      L  ++L   +L+      + + +  L  +++ +N  +      ++   L
Sbjct: 719 PKDGNYKNTYLLTTIDLRFNKLTSLSDDFRATTLPYLSNMDVSYNCFSSFPTQPLNSSQL 778

Query: 276 TNL---ESLNLDSCGIGDEGLVNLTGLCNLKCLELSDTQVGSSGLRHL--SGLTNLESIN 330
                    + +   I  +    +T   +L  L++         +R +       L  ++
Sbjct: 779 KAFGIRHQRDAEGNRILRQWPTGITTCPSLIQLQIGSND-----IRKVDEKLTPQLYILD 833

Query: 331 LSFTGISDGSLRKLAGLSSLKSLNLDARQITD 362
           ++        +  +          L   +  D
Sbjct: 834 IADNPNISIDVTSVCPYIEAGMYVLLYDKTQD 865

>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron} Length = 876

 Score = 59.1 bits (143), Expect = 2e-09
 Identities = 41/242 (16%), Positives = 70/242 (28%), Gaps = 11/242 (4%)

Query: 233 LNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNLD----SCGI 288
            N       D         G +  L+L            +  LT L+ L+      +   
Sbjct: 304 FNKELDMWGDQPGVDLDNNGRVTGLSLAGFGAKGRVPDAIGQLTELKVLSFGTHSETVSG 363

Query: 289 GDEGLVNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISDGSLRKLAGLS 348
              G   LT   + +             L +   L   + +  +     +    K     
Sbjct: 364 RLFGDEELTPDMSEERKHRIRMHYKKMFLDYDQRLNLSDLLQDAINRNPEMKPIKKDSRI 423

Query: 349 SLKSLNLDARQITDTGL-AALTSLTGLTHLDLFGARITDSGAAYLRNFKNLRSLEICGGG 407
           SLK   +       T +  A+  LT L  +    +  T    A      N    +     
Sbjct: 424 SLKDTQIGNLTNRITFISKAIQRLTKLQIIYFANSPFTYDNIAVDWEDANSDYAK----- 478

Query: 408 LTDAGVKHIKDLSSLTLLNLSQNCNLTDKTLELISGLTGLVSLNVSNSRITSAGLRHLNH 467
             +       +L  LT + L  NC    +  + +  L  L SLN++ +R  SA     + 
Sbjct: 479 QYENEELSWSNLKDLTDVELY-NCPNMTQLPDFLYDLPELQSLNIACNRGISAAQLKADW 537

Query: 468 AR 469
            R
Sbjct: 538 TR 539

>3bz5_A Internalin-J, INLJ; leucine rich repeat (LRR), cysteine ladder, asparagine ladder, virulence factor, solenoid, cell WALL; 2.70A {Listeria monocytogenes} Length = 457

 Score = 92.4 bits (230), Expect = 2e-20
 Identities = 75/401 (18%), Positives = 140/401 (34%), Gaps = 45/401 (11%)

Query: 59  LLSVDLSGSDVTDSGLIHLKDCSNLQSLDFNFCIQISDGGLEHLRGLSNLTSLSFRRNNA 118
             S   +  ++  +  I  +  + L SLD +    I+D  +  +  L+ LT L    NN 
Sbjct: 20  FASEVAAAFEMQATDTISEEQLATLTSLDCHNS-SITD--MTGIEKLTGLTKLICTSNN- 75

Query: 119 ITAQGMKAFAGLINLVKLDLERCTRIHGGLVNLKGLMKLESLNIKWCNCITDSDMKPLSG 178
           IT       +   NL  L  +   ++    +++  L KL  LN    N +T      +S 
Sbjct: 76  ITTL---DLSQNTNLTYLACDSN-KLTN--LDVTPLTKLTYLNC-DTNKLTKL---DVSQ 125

Query: 179 LTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACLDSLSALGSLFYLNLNRC 238
              L  L  + + +T+  +++   L +L     +           ++    L  L+ +  
Sbjct: 126 NPLLTYLNCARNTLTEIDVSHNTQLTELDCHLNKKIT-----KLDVTPQTQLTTLDCSFN 180

Query: 239 QLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNLDSCGIGDEGLVNLTG 298
           ++++      S+   L  LN   N IT    + L     L  L+  S  + +   +++T 
Sbjct: 181 KITE---LDVSQNKLLNRLNCDTNNITK---LDLNQNIQLTFLDCSSNKLTE---IDVTP 231

Query: 299 LCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISDGSLRKLAGLSSLKSLNLDAR 358
           L  L   + S   +    +  LS LT L  I      I      +L        +   A 
Sbjct: 232 LTQLTYFDCSVNPLTELDVSTLSKLTTLHCIQTDLLEIDLTHNTQL--------IYFQAE 283

Query: 359 QITDTGLAALTSLTGLTHLDLFGARITDSGAAYLRNFKNLRSLEICGGGLTDAGVKHIKD 418
                    +T  T L  LD   A IT+     L     L  L +    LT+     +  
Sbjct: 284 GCRKIKELDVTHNTQLYLLDCQAAGITEL---DLSQNPKLVYLYLNNTELTEL---DVSH 337

Query: 419 LSSLTLLNLSQNCNLTDKTLELISGLTGLVSLNVSNSRITS 459
            + L  L+     ++ D     +  +  L +   +  +  +
Sbjct: 338 NTKLKSLSCVNA-HIQD--FSSVGKIPALNNNFEAEGQTIT 375

>3bz5_A Internalin-J, INLJ; leucine rich repeat (LRR), cysteine ladder, asparagine ladder, virulence factor, solenoid, cell WALL; 2.70A {Listeria monocytogenes} Length = 457

 Score = 83.2 bits (206), Expect = 2e-17
 Identities = 66/406 (16%), Positives = 151/406 (37%), Gaps = 45/406 (11%)

Query: 57  SSLLSVDLSGSDVTDSGLIHLKDCSNLQSLDFNFCIQISDGGLEHLRGLSNLTSLSFRRN 116
           + L  +  + +++T    + L   +NL  L  +   ++++     +  L+ LT L+    
Sbjct: 64  TGLTKLICTSNNITT---LDLSQNTNLTYLACDSN-KLTN---LDVTPLTKLTYLNCD-T 115

Query: 117 NAITAQGMKAFAGLINLVKLDLERCTRIHGGLVNLKGLMKLESLNIKWCNCITDSDMKPL 176
           N +T       +    L  L+  R        +++    +L  L+   C+         +
Sbjct: 116 NKLTKLD---VSQNPLLTYLNCARN---TLTEIDVSHNTQLTELD---CHLNKKITKLDV 166

Query: 177 SGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACLDSLSALGSLFYLNLN 236
           +  T L +L  S +K+T+  ++     + L  LN +   +T      L+    L +L+ +
Sbjct: 167 TPQTQLTTLDCSFNKITELDVS---QNKLLNRLNCDTNNITKL---DLNQNIQLTFLDCS 220

Query: 237 RCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNLDSCGIGDEGLVNL 296
             +L++      + +  L   +   N +T+   + +  L+ L +L+     + +  L + 
Sbjct: 221 SNKLTE---IDVTPLTQLTYFDCSVNPLTE---LDVSTLSKLTTLHCIQTDLLEIDLTHN 274

Query: 297 TGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISDGSLRKLAGLSSLKSLNLD 356
           T L   +       +        ++  T L  ++    GI++  L +      L  L L+
Sbjct: 275 TQLIYFQAEGCRKIKELD-----VTHNTQLYLLDCQAAGITELDLSQ---NPKLVYLYLN 326

Query: 357 ARQITDTGLAALTSLTGLTHLDLFGARITDSGAAYLRNFKNLRSLEICGGGLTDAGVKHI 416
             ++T+  ++  T    L  L    A I D  +  +     L +     G       + +
Sbjct: 327 NTELTELDVSHNTK---LKSLSCVNAHIQDFSS--VGKIPALNNNFEAEGQTITMPKETL 381

Query: 417 KDLSSLTLLNLSQNCNLTDKTLELISGLTGLVSLNVSNSRITSAGL 462
              +SLT+       +     + +  G  G+   + + + IT   L
Sbjct: 382 T-NNSLTIAVSPDLLDQFGNPMNIEPGDGGV--YDQATNTITWENL 424

>3bz5_A Internalin-J, INLJ; leucine rich repeat (LRR), cysteine ladder, asparagine ladder, virulence factor, solenoid, cell WALL; 2.70A {Listeria monocytogenes} Length = 457

 Score = 72.4 bits (178), Expect = 7e-14
 Identities = 43/235 (18%), Positives = 85/235 (36%), Gaps = 23/235 (9%)

Query: 233 LNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNLDSCGIGDEG 292
                 ++         ++ +L  L+   + ITD  +  ++ LT L  L   S  I    
Sbjct: 23  EVAAAFEMQATDTISEEQLATLTSLDCHNSSITD--MTGIEKLTGLTKLICTSNNITT-- 78

Query: 293 LVNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISDGSLRKLAGLSSLKS 352
            ++L+   NL  L     ++ +     ++ LT L  +N     ++   +   +    L  
Sbjct: 79  -LDLSQNTNLTYLACDSNKLTNL---DVTPLTKLTYLNCDTNKLTKLDV---SQNPLLTY 131

Query: 353 LNLDARQITDTGLAALTSLTGLTHLDLFGARITDSGAAYLRNFKNLRSLEICGGGLTDAG 412
           LN     +T+  ++  T LT    LD    +        +     L +L+     +T+  
Sbjct: 132 LNCARNTLTEIDVSHNTQLT---ELDCHLNKKITKLD--VTPQTQLTTLDCSFNKITEL- 185

Query: 413 VKHIKDLSSLTLLNLSQNCNLTDKTLELISGLTGLVSLNVSNSRITSAGLRHLNH 467
              +     L  LN   N N+T   L   +    L  L+ S++++T   +  L  
Sbjct: 186 --DVSQNKLLNRLNCDTN-NITKLDL---NQNIQLTFLDCSSNKLTEIDVTPLTQ 234

>3bz5_A Internalin-J, INLJ; leucine rich repeat (LRR), cysteine ladder, asparagine ladder, virulence factor, solenoid, cell WALL; 2.70A {Listeria monocytogenes} Length = 457

 Score = 60.9 bits (148), Expect = 4e-10
 Identities = 38/183 (20%), Positives = 75/183 (40%), Gaps = 17/183 (9%)

Query: 277 NLESLNLDSCGIGDEGLVNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSFTGI 336
           N  S    +  +     ++   L  L  L+  ++ +  + +  +  LT L  +  +   I
Sbjct: 19  NFASEVAAAFEMQATDTISEEQLATLTSLDCHNSSI--TDMTGIEKLTGLTKLICTSNNI 76

Query: 337 SDGSLRKLAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLFGARITDSGAAYLRNFK 396
           +      L+  ++L  L  D+ ++T+     +T LT LT+L+    ++T      +    
Sbjct: 77  TTLD---LSQNTNLTYLACDSNKLTNL---DVTPLTKLTYLNCDTNKLTKLD---VSQNP 127

Query: 397 NLRSLEICGGGLTDAGVKHIKDLSSLTLLNLSQNCNLTDKTLELISGLTGLVSLNVSNSR 456
            L  L      LT+  V H    + LT L+   N  +T      ++  T L +L+ S ++
Sbjct: 128 LLTYLNCARNTLTEIDVSH---NTQLTELDCHLNKKITKLD---VTPQTQLTTLDCSFNK 181

Query: 457 ITS 459
           IT 
Sbjct: 182 ITE 184

>1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein; HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A* 1xcd_A* Length = 330

 Score = 89.3 bits (222), Expect = 7e-20
 Identities = 52/290 (17%), Positives = 111/290 (38%), Gaps = 28/290 (9%)

Query: 81  SNLQSLDFNFCIQISDGGLEHLRGLSNLTSLSFRRNNAITAQGMKAFAGLINLVKLDLE- 139
            +   LD     +I++      + L NL +L    NN I+     AFA L+ L +L L  
Sbjct: 52  PDTALLDLQNN-KITEIKDGDFKNLKNLHTLILI-NNKISKISPGAFAPLVKLERLYLSK 109

Query: 140 -RCTRIHGGLVNLKGLMKLESLNIKWCNCITDSDMKPLSGLTNLKSLQISCSKVTDSGI- 197
            +   +   +        L+ L +   N IT       +GL  +  +++  + +  SGI 
Sbjct: 110 NQLKELPEKM-----PKTLQELRVHE-NEITKVRKSVFNGLNQMIVVELGTNPLKSSGIE 163

Query: 198 -AYLKGLQKLTLLNLEGCPVTAACLDSLSALGSLFYLNLNRCQLSDDGCEKFSKIGSLKV 256
               +G++KL+ + +    +T           SL  L+L+  +++         + +L  
Sbjct: 164 NGAFQGMKKLSYIRIADTNITTI---PQGLPPSLTELHLDGNKITKVDAASLKGLNNLAK 220

Query: 257 LNLGFNEITDECLVHLKGLTNLESLNLDSCGIG--DEGLVNLTGLCNLKCLELSD---TQ 311
           L L FN I+      L    +L  L+L++  +     GL +      ++ + L +   + 
Sbjct: 221 LGLSFNSISAVDNGSLANTPHLRELHLNNNKLVKVPGGLADHK---YIQVVYLHNNNISA 277

Query: 312 VGSSGLRH---LSGLTNLESINLSFTGISDGSLRKLA--GLSSLKSLNLD 356
           +GS+        +   +   ++L    +    ++      +    ++ L 
Sbjct: 278 IGSNDFCPPGYNTKKASYSGVSLFSNPVQYWEIQPSTFRCVYVRAAVQLG 327

>1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein; HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A* 1xcd_A* Length = 330

 Score = 86.6 bits (215), Expect = 5e-19
 Identities = 51/295 (17%), Positives = 102/295 (34%), Gaps = 30/295 (10%)

Query: 166 NCITDSDMKPLSGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACLDSLS 225
           N IT+        L NL +L +  +K++         L KL  L L    +         
Sbjct: 62  NKITEIKDGDFKNLKNLHTLILINNKISKISPGAFAPLVKLERLYLSKNQLKEL---PEK 118

Query: 226 ALGSLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVH--LKGLTNLESLNL 283
              +L  L ++  +++      F+ +  + V+ LG N +    + +   +G+  L  + +
Sbjct: 119 MPKTLQELRVHENEITKVRKSVFNGLNQMIVVELGTNPLKSSGIENGAFQGMKKLSYIRI 178

Query: 284 DSCGIGDEGLVNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISDGSLRK 343
               I     +      +L  L L   ++       L GL NL  + LSF  IS      
Sbjct: 179 ADTNITT---IPQGLPPSLTELHLDGNKITKVDAASLKGLNNLAKLGLSFNSISAVDNGS 235

Query: 344 LAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLFGARITDSGAAYLRNFKNLRSLEI 403
           LA    L+ L+L+  ++       L     +  + L    I+            + S + 
Sbjct: 236 LANTPHLRELHLNNNKLVKVP-GGLADHKYIQVVYLHNNNIS-----------AIGSNDF 283

Query: 404 CGGGLTDAGVKHIKDLSSLTLLNLSQNCNLTDKTLE--LISGLTGLVSLNVSNSR 456
           C  G            +S + ++L  N  +    ++      +    ++ + N +
Sbjct: 284 CPPGYNT-------KKASYSGVSLFSN-PVQYWEIQPSTFRCVYVRAAVQLGNYK 330

>1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein; HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A* 1xcd_A* Length = 330

 Score = 75.8 bits (187), Expect = 2e-15
 Identities = 46/229 (20%), Positives = 88/229 (38%), Gaps = 28/229 (12%)

Query: 253 SLKVLNLGFNEITDECLVHLKGLTNLESLNLDSCGIGDEGLVNLTGLCNLKCLELSDTQV 312
              +L+L  N+IT+      K L NL +L L +  I          L  L+ L LS  Q 
Sbjct: 53  DTALLDLQNNKITEIKDGDFKNLKNLHTLILINNKISKISPGAFAPLVKLERLYLSKNQ- 111

Query: 313 GSSGLRHLSG--LTNLESINLS---FTGISDGSLRKLAGLSSLKSLNLDARQITDTGL-- 365
               L+ L       L+ + +     T +         GL+ +  + L    +  +G+  
Sbjct: 112 ----LKELPEKMPKTLQELRVHENEITKVRKSVF---NGLNQMIVVELGTNPLKSSGIEN 164

Query: 366 AALTSLTGLTHLDLFGARIT--DSGAAYLRNFKNLRSLEICGGGLTDAGVKHIKDLSSLT 423
            A   +  L+++ +    IT    G        +L  L + G  +T      +K L++L 
Sbjct: 165 GAFQGMKKLSYIRIADTNITTIPQGL-----PPSLTELHLDGNKITKVDAASLKGLNNLA 219

Query: 424 LLNLSQNCNLTDKTLELISGLTGLVSLNVSNSRITS-----AGLRHLNH 467
            L LS N  ++      ++    L  L+++N+++       A  +++  
Sbjct: 220 KLGLSFNS-ISAVDNGSLANTPHLRELHLNNNKLVKVPGGLADHKYIQV 267

>1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein; HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A* 1xcd_A* Length = 330

 Score = 54.6 bits (132), Expect = 2e-08
 Identities = 27/153 (17%), Positives = 55/153 (35%), Gaps = 16/153 (10%)

Query: 324 TNLESINLSFTGISDGSLRKLAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLFGAR 383
            +   ++L    I++        L +L +L L   +I+     A   L  L  L L   +
Sbjct: 52  PDTALLDLQNNKITEIKDGDFKNLKNLHTLILINNKISKISPGAFAPLVKLERLYLSKNQ 111

Query: 384 ITD--SGAAYLRNFKNLRSLEICGGGLTDAGVKHIKDLSSLTLLNLSQNCNLTDKTLE-- 439
           + +           K L+ L +    +T         L+ + ++ L  N  L    +E  
Sbjct: 112 LKELPEKM-----PKTLQELRVHENEITKVRKSVFNGLNQMIVVELGTNP-LKSSGIENG 165

Query: 440 LISGLTGLVSLNVSNSRITS------AGLRHLN 466
              G+  L  + ++++ IT+        L  L+
Sbjct: 166 AFQGMKKLSYIRIADTNITTIPQGLPPSLTELH 198

>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae} Length = 487

 Score = 89.9 bits (223), Expect = 2e-19
 Identities = 49/386 (12%), Positives = 124/386 (32%), Gaps = 28/386 (7%)

Query: 81  SNLQSLDFNFCIQISDGGLEHLRGLSNLTSLSFRRNNAITAQGMKAFAGLINLVKLDLER 140
           +  +         +        +   N+  L    N  ++       A    L  L+L  
Sbjct: 10  NRYKIEKVTDS-SLKQALASLRQSAWNVKELDLSGNP-LSQISAADLAPFTKLELLNLSS 67

Query: 141 CTRIHGGLVNLKGLMKLESLNIKWCNCITDSDMKPLSGLTNLKSLQISCSKVTDSGIAYL 200
              ++   ++L+ L  L +L++   N + +     L    ++++L  + + ++    +  
Sbjct: 68  N-VLY-ETLDLESLSTLRTLDLNN-NYVQE-----LLVGPSIETLHAANNNISRVSCSRG 119

Query: 201 KGLQKLTLLNLEGCPVTAACLDSLSALGSLFYLNLNRCQLSD-DGCEKFSKIGSLKVLNL 259
           +G +    + L    +T            + YL+L   ++   +  E  +   +L+ LNL
Sbjct: 120 QGKKN---IYLANNKITMLRDLDEGCRSRVQYLDLKLNEIDTVNFAELAASSDTLEHLNL 176

Query: 260 GFNEITDECLVHLKGLTNLESLNLDSCGIG--DEGLVNLTGLCNLKCLELSDTQVGSSGL 317
            +N I D  +        L++L+L S  +        +      +  + L + ++     
Sbjct: 177 QYNFIYD--VKGQVVFAKLKTLDLSSNKLAFMGPEFQSAA---GVTWISLRNNKL-VLIE 230

Query: 318 RHLSGLTNLESINLSFTGISDGSLRKLAGLSSLKSLNLDARQITDTGLAALTSLTGLTHL 377
           + L    NLE  +L   G   G+LR      + +   +  + +           T  T  
Sbjct: 231 KALRFSQNLEHFDLRGNGFHCGTLRDF-FSKNQRVQTVAKQTVKKLTGQNEEECTVPTLG 289

Query: 378 DLFGARITDSGAAYLRNFKNLRSLEICGGGLTDAGVKHIK----DLSSLTLLNLSQNCNL 433
                   D  A +      L+  E        +  + ++    + +    ++  +    
Sbjct: 290 HYGAYCCEDLPAPFADRLIALKRKEHALLSGQGSETERLECERENQARQREIDALKE-QY 348

Query: 434 TDKTLELISGLTGLVSLNVSNSRITS 459
                ++       ++L      +  
Sbjct: 349 RTVIDQVTLRKQAKITLEQKKKALDE 374

>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae} Length = 487

 Score = 84.5 bits (209), Expect = 1e-17
 Identities = 44/274 (16%), Positives = 101/274 (36%), Gaps = 15/274 (5%)

Query: 179 LTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACLDSLSALGSLFYLNLNRC 238
               K  +++ S +  +  +  +    +  L+L G P++      L+    L  LNL+  
Sbjct: 9   GNRYKIEKVTDSSLKQALASLRQSAWNVKELDLSGNPLSQISAADLAPFTKLELLNLSSN 68

Query: 239 QLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNLDSCGIGDEGLVNLTG 298
            L +        + +L+ L+L  N + +     L    ++E+L+  +  I     V+ + 
Sbjct: 69  VLYE--TLDLESLSTLRTLDLNNNYVQE-----LLVGPSIETLHAANNNISR---VSCSR 118

Query: 299 LCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISDGSLRKLAG-LSSLKSLNLDA 357
               K + L++ ++           + ++ ++L    I   +  +LA    +L+ LNL  
Sbjct: 119 GQGKKNIYLANNKITMLRDLDEGCRSRVQYLDLKLNEIDTVNFAELAASSDTLEHLNLQY 178

Query: 358 RQITDTGLAALTSLTGLTHLDLFGARITDSGAAYLRNFKNLRSLEICGGGLTDAGVKHIK 417
             I D  +        L  LDL   ++   G    ++   +  + +    L     K ++
Sbjct: 179 NFIYD--VKGQVVFAKLKTLDLSSNKLAFMGPE-FQSAAGVTWISLRNNKLVLIE-KALR 234

Query: 418 DLSSLTLLNLSQNCNLTDKTLELISGLTGLVSLN 451
              +L   +L  N        +  S    + ++ 
Sbjct: 235 FSQNLEHFDLRGNGFHCGTLRDFFSKNQRVQTVA 268

>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae} Length = 487

 Score = 84.1 bits (208), Expect = 1e-17
 Identities = 54/314 (17%), Positives = 111/314 (35%), Gaps = 17/314 (5%)

Query: 156 KLESLNIKWCNCITDSDMKPLSGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCP 215
           + +   +   + +  +         N+K L +S + ++    A L    KL LLNL    
Sbjct: 11  RYKIEKVT-DSSLKQALASLRQSAWNVKELDLSGNPLSQISAADLAPFTKLELLNLSSNV 69

Query: 216 VTAACLDSLSALGSLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGL 275
           +       L +L +L  L+LN   + +          S++ L+   N I+    V     
Sbjct: 70  LYE--TLDLESLSTLRTLDLNNNYVQE-----LLVGPSIETLHAANNNISR---VSCSRG 119

Query: 276 TNLESLNLDSCGIGDEGLVNLTGLCNLKCLELSDTQVGSSGLRHLSG-LTNLESINLSFT 334
              +++ L +  I     ++      ++ L+L   ++ +     L+     LE +NL + 
Sbjct: 120 QGKKNIYLANNKITMLRDLDEGCRSRVQYLDLKLNEIDTVNFAELAASSDTLEHLNLQYN 179

Query: 335 GISDGSLRKLAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLFGARITDSGAAYLRN 394
            I    ++     + LK+L+L + ++   G     S  G+T + L   ++     A LR 
Sbjct: 180 FIY--DVKGQVVFAKLKTLDLSSNKLAFMG-PEFQSAAGVTWISLRNNKLVLIEKA-LRF 235

Query: 395 FKNLRSLEICGGGL-TDAGVKHIKDLSSLTLLNLSQNCNLTDKTLELISGLTGLVSLNVS 453
            +NL   ++ G G               +  +       LT +  E  +  T        
Sbjct: 236 SQNLEHFDLRGNGFHCGTLRDFFSKNQRVQTVAKQTVKKLTGQNEEECTVPTLGHYGAYC 295

Query: 454 NSRITSAGLRHLNH 467
              + +     L  
Sbjct: 296 CEDLPAPFADRLIA 309

>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae} Length = 487

 Score = 82.6 bits (204), Expect = 4e-17
 Identities = 46/239 (19%), Positives = 88/239 (36%), Gaps = 15/239 (6%)

Query: 222 DSLSALGSLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESL 281
           +            +    L            ++K L+L  N ++      L   T LE L
Sbjct: 4   EIKQNGNRYKIEKVTDSSLKQALASLRQSAWNVKELDLSGNPLSQISAADLAPFTKLELL 63

Query: 282 NLDSCGIGDEGLVNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISDGSL 341
           NL S  +     ++L  L  L+ L+L++       ++ L    ++E+++ +   IS  S 
Sbjct: 64  NLSSNVL--YETLDLESLSTLRTLDLNNNY-----VQELLVGPSIETLHAANNNISRVSC 116

Query: 342 RKLAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLFGARITD-SGAAYLRNFKNLRS 400
            +       K++ L   +IT          + + +LDL    I   + A    +   L  
Sbjct: 117 SR---GQGKKNIYLANNKITMLRDLDEGCRSRVQYLDLKLNEIDTVNFAELAASSDTLEH 173

Query: 401 LEICGGGLTDAGVKHIKDLSSLTLLNLSQNCNLTDKTLELISGLTGLVSLNVSNSRITS 459
           L +    + D  VK     + L  L+LS N  L     E      G+  +++ N+++  
Sbjct: 174 LNLQYNFIYD--VKGQVVFAKLKTLDLSSN-KLAFMGPE-FQSAAGVTWISLRNNKLVL 228

>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae} Length = 487

 Score = 79.9 bits (197), Expect = 3e-16
 Identities = 45/265 (16%), Positives = 97/265 (36%), Gaps = 18/265 (6%)

Query: 203 LQKLTLLNLEGCPVTAACLDSLSALGSLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFN 262
             +  +  +    +  A      +  ++  L+L+   LS       +    L++LNL  N
Sbjct: 9   GNRYKIEKVTDSSLKQALASLRQSAWNVKELDLSGNPLSQISAADLAPFTKLELLNLSSN 68

Query: 263 EITDECLVHLKGLTNLESLNLDSCGIGDEGLVNLTGLCNLKCLELSDTQVGSSGLRHLSG 322
            + +   + L+ L+ L +L+L++  + +     L    +++ L  ++  +         G
Sbjct: 69  VLYE--TLDLESLSTLRTLDLNNNYVQE-----LLVGPSIETLHAANNNISRVSCSRGQG 121

Query: 323 LTNLESINLSFTGISDGSLRKLAGLSSLKSLNLDARQITDTGLAALTS-LTGLTHLDLFG 381
             N+    L+   I+          S ++ L+L   +I     A L +    L HL+L  
Sbjct: 122 KKNI---YLANNKITMLRDLDEGCRSRVQYLDLKLNEIDTVNFAELAASSDTLEHLNLQY 178

Query: 382 ARITD-SGAAYLRNFKNLRSLEICGGGLTDAGVKHIKDLSSLTLLNLSQNCNLTDKTLEL 440
             I D  G         L++L++    L   G    +  + +T ++L  N  L     + 
Sbjct: 179 NFIYDVKGQVVF---AKLKTLDLSSNKLAFMG-PEFQSAAGVTWISLRNN-KLVLIE-KA 232

Query: 441 ISGLTGLVSLNVSNSRITSAGLRHL 465
           +     L   ++  +      LR  
Sbjct: 233 LRFSQNLEHFDLRGNGFHCGTLRDF 257

>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae} Length = 487

 Score = 73.3 bits (180), Expect = 3e-14
 Identities = 52/431 (12%), Positives = 119/431 (27%), Gaps = 46/431 (10%)

Query: 57  SSLLSVDLSGSDVTDSGLIHLKDCSNLQSLDFNFCIQISDGGLEHLRGLSNLTSLSFRRN 116
            ++  +DLSG+ ++      L   + L+ L+ +    + +     L  LS L +L    N
Sbjct: 34  WNVKELDLSGNPLSQISAADLAPFTKLELLNLSSN-VLYE--TLDLESLSTLRTLDLNNN 90

Query: 117 NAITAQGMKAFAGLINLVKLDLERCTRIHGGLVNLKGLMKLESLNIKWCNCITDSDMKPL 176
                  ++      ++  L       I    V+       +++ +   N IT       
Sbjct: 91  Y------VQELLVGPSIETLHAAN-NNISR--VSCSRGQGKKNIYLAN-NKITMLRDLDE 140

Query: 177 SGLTNLKSLQISCSKVTD-SGIAYLKGLQKLTLLNLEGCPVTAACLDSLSALGSLFYLNL 235
              + ++ L +  +++   +          L  LNL+   +    +        L  L+L
Sbjct: 141 GCRSRVQYLDLKLNEIDTVNFAELAASSDTLEHLNLQYNFIYD--VKGQVVFAKLKTLDL 198

Query: 236 NRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNLD----SCGIGDE 291
           +  +L+  G  +F     +  ++L  N++       L+   NLE  +L      CG   +
Sbjct: 199 SSNKLAFMG-PEFQSAAGVTWISLRNNKLV-LIEKALRFSQNLEHFDLRGNGFHCGTLRD 256

Query: 292 GLVNLTGLCNLKC-------------------LELSDTQVGSSGLRHLSGLTNLESINLS 332
                  +  +                                       L  L+    +
Sbjct: 257 FFSKNQRVQTVAKQTVKKLTGQNEEECTVPTLGHYGAYCCEDLPAPFADRLIALKRKEHA 316

Query: 333 FTGISDGSLRKL----AGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLFGARITDSG 388
                     +L       +  + ++    Q                 L+     + +  
Sbjct: 317 LLSGQGSETERLECERENQARQREIDALKEQYRTVIDQVTLRKQAKITLEQKKKALDEQV 376

Query: 389 AAYLRNFKNLRSLEICGGGLTDAGVKHIKDLSSLTLLNLSQNCNLTDKTLELISGLTGLV 448
           +   R    L        G  +      ++ S L LL             +       + 
Sbjct: 377 SNGRRAHAELDGTLQQAVGQIEL-QHATEEQSPLQLLRAIVKRYEEMYVEQQSVQNNAIR 435

Query: 449 SLNVSNSRITS 459
             ++   + T 
Sbjct: 436 DWDMYQHKETQ 446

>3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens} Length = 440

 Score = 89.0 bits (221), Expect = 2e-19
 Identities = 47/226 (20%), Positives = 84/226 (37%), Gaps = 3/226 (1%)

Query: 206 LTLLNLEGCPVTAACLDSLSALGSLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEIT 265
             LLNL    +    ++S   L  L  L L+R  +       F+ + +L  L L  N +T
Sbjct: 66  TRLLNLHENQIQIIKVNSFKHLRHLEILQLSRNHIRTIEIGAFNGLANLNTLELFDNRLT 125

Query: 266 DECLVHLKGLTNLESLNLDSCGIGDEGLVNLTGLCNLKCLELSDT-QVGSSGLRHLSGLT 324
                    L+ L+ L L +  I          + +L+ L+L +  ++         GL+
Sbjct: 126 TIPNGAFVYLSKLKELWLRNNPIESIPSYAFNRIPSLRRLDLGELKRLSYISEGAFEGLS 185

Query: 325 NLESINLSFTGISDGSLRKLAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLFGARI 384
           NL  +NL+   +    +  L  L  L  L+L    ++     +   L  L  L +  ++I
Sbjct: 186 NLRYLNLAMCNLR--EIPNLTPLIKLDELDLSGNHLSAIRPGSFQGLMHLQKLWMIQSQI 243

Query: 385 TDSGAAYLRNFKNLRSLEICGGGLTDAGVKHIKDLSSLTLLNLSQN 430
                    N ++L  + +    LT         L  L  ++L  N
Sbjct: 244 QVIERNAFDNLQSLVEINLAHNNLTLLPHDLFTPLHHLERIHLHHN 289

>3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens} Length = 440

 Score = 85.2 bits (211), Expect = 4e-18
 Identities = 47/208 (22%), Positives = 86/208 (41%), Gaps = 4/208 (1%)

Query: 253 SLKVLNLGFNEITDECLVHLKGLTNLESLNLDSCGIGDEGLVNLTGLCNLKCLELSDTQV 312
           + ++LNL  N+I    +   K L +LE L L    I    +    GL NL  LEL D ++
Sbjct: 65  NTRLLNLHENQIQIIKVNSFKHLRHLEILQLSRNHIRTIEIGAFNGLANLNTLELFDNRL 124

Query: 313 GSSGLRHLSGLTNLESINLSFTGISDGSLRKLAGLSSLKSLNL-DARQITDTGLAALTSL 371
            +        L+ L+ + L    I          + SL+ L+L + ++++     A   L
Sbjct: 125 TTIPNGAFVYLSKLKELWLRNNPIESIPSYAFNRIPSLRRLDLGELKRLSYISEGAFEGL 184

Query: 372 TGLTHLDLFGARITDSGAAYLRNFKNLRSLEICGGGLTDAGVKHIKDLSSLTLLNLSQNC 431
           + L +L+L    + +     L     L  L++ G  L+       + L  L  L + Q+ 
Sbjct: 185 SNLRYLNLAMCNLREIPN--LTPLIKLDELDLSGNHLSAIRPGSFQGLMHLQKLWMIQS- 241

Query: 432 NLTDKTLELISGLTGLVSLNVSNSRITS 459
            +          L  LV +N++++ +T 
Sbjct: 242 QIQVIERNAFDNLQSLVEINLAHNNLTL 269

>3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens} Length = 440

 Score = 84.0 bits (208), Expect = 1e-17
 Identities = 55/217 (25%), Positives = 86/217 (39%), Gaps = 3/217 (1%)

Query: 166 NCITDSDMKPLSGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACLDSLS 225
           N I    +     L +L+ LQ+S + +    I    GL  L  L L    +T     +  
Sbjct: 74  NQIQIIKVNSFKHLRHLEILQLSRNHIRTIEIGAFNGLANLNTLELFDNRLTTIPNGAFV 133

Query: 226 ALGSLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLG-FNEITDECLVHLKGLTNLESLNLD 284
            L  L  L L    +       F++I SL+ L+LG    ++       +GL+NL  LNL 
Sbjct: 134 YLSKLKELWLRNNPIESIPSYAFNRIPSLRRLDLGELKRLSYISEGAFEGLSNLRYLNLA 193

Query: 285 SCGIGDEGLVNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISDGSLRKL 344
            C + +  + NLT L  L  L+LS   + +       GL +L+ + +  + I        
Sbjct: 194 MCNLRE--IPNLTPLIKLDELDLSGNHLSAIRPGSFQGLMHLQKLWMIQSQIQVIERNAF 251

Query: 345 AGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLFG 381
             L SL  +NL    +T       T L  L  + L  
Sbjct: 252 DNLQSLVEINLAHNNLTLLPHDLFTPLHHLERIHLHH 288

>3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens} Length = 440

 Score = 77.1 bits (190), Expect = 2e-15
 Identities = 55/229 (24%), Positives = 88/229 (38%), Gaps = 28/229 (12%)

Query: 81  SNLQSLDFNFCIQISDGGLEHLRGLSNLTSLSFRRNNAITAQGMKAFAGLINLVKLDLER 140
           +N + L+ +   QI    +   + L +L  L   RN+ I    + AF GL NL  L+L  
Sbjct: 64  TNTRLLNLHEN-QIQIIKVNSFKHLRHLEILQLSRNH-IRTIEIGAFNGLANLNTLELFD 121

Query: 141 C--TRIH----GGLVNLK------------------GLMKLESLNIKWCNCITDSDMKPL 176
              T I       L  LK                   +  L  L++     ++       
Sbjct: 122 NRLTTIPNGAFVYLSKLKELWLRNNPIESIPSYAFNRIPSLRRLDLGELKRLSYISEGAF 181

Query: 177 SGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACLDSLSALGSLFYLNLN 236
            GL+NL+ L ++   + +  I  L  L KL  L+L G  ++A    S   L  L  L + 
Sbjct: 182 EGLSNLRYLNLAMCNLRE--IPNLTPLIKLDELDLSGNHLSAIRPGSFQGLMHLQKLWMI 239

Query: 237 RCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNLDS 285
           + Q+       F  + SL  +NL  N +T         L +LE ++L  
Sbjct: 240 QSQIQVIERNAFDNLQSLVEINLAHNNLTLLPHDLFTPLHHLERIHLHH 288

>3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens} Length = 440

 Score = 64.4 bits (157), Expect = 3e-11
 Identities = 42/174 (24%), Positives = 72/174 (41%), Gaps = 10/174 (5%)

Query: 301 NLKCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISDGSLRKLAGLSSLKSLNLDARQI 360
           N + L L + Q+    +     L +LE + LS   I    +    GL++L +L L   ++
Sbjct: 65  NTRLLNLHENQIQIIKVNSFKHLRHLEILQLSRNHIRTIEIGAFNGLANLNTLELFDNRL 124

Query: 361 TDTGLAALTSLTGLTHLDLFGARITDSGAAYLRNFKNLRSLEICGG-GLTDAGVKHIKDL 419
           T     A   L+ L  L L    I    +       +LR L++     L+       + L
Sbjct: 125 TTIPNGAFVYLSKLKELWLRNNPIESIPSYAFNRIPSLRRLDLGELKRLSYISEGAFEGL 184

Query: 420 SSLTLLNLSQNCNLTDKTLELISGLTGLVSLNVSNSRITS------AGLRHLNH 467
           S+L  LNL+   NL    +  ++ L  L  L++S + +++       GL HL  
Sbjct: 185 SNLRYLNLAMC-NLR--EIPNLTPLIKLDELDLSGNHLSAIRPGSFQGLMHLQK 235

>3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens} Length = 440

 Score = 60.9 bits (148), Expect = 3e-10
 Identities = 41/185 (22%), Positives = 74/185 (40%), Gaps = 14/185 (7%)

Query: 57  SSLLSVDLSG---SDVTDSGLIHLKDCSNLQSLDFNFCIQISDGGLEHLRGLSNLTSLSF 113
           ++L +++L     + + +   ++L   S L+ L       I          + +L  L  
Sbjct: 112 ANLNTLELFDNRLTTIPNGAFVYL---SKLKELWLRNN-PIESIPSYAFNRIPSLRRLDL 167

Query: 114 RRNNAITAQGMKAFAGLINLVKLDLERC--TRIHGGLVNLKGLMKLESLNIKWCNCITDS 171
                ++     AF GL NL  L+L  C    I     NL  L+KL+ L++   N ++  
Sbjct: 168 GELKRLSYISEGAFEGLSNLRYLNLAMCNLREIP----NLTPLIKLDELDLSG-NHLSAI 222

Query: 172 DMKPLSGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACLDSLSALGSLF 231
                 GL +L+ L +  S++          LQ L  +NL    +T    D  + L  L 
Sbjct: 223 RPGSFQGLMHLQKLWMIQSQIQVIERNAFDNLQSLVEINLAHNNLTLLPHDLFTPLHHLE 282

Query: 232 YLNLN 236
            ++L+
Sbjct: 283 RIHLH 287

>3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens} Length = 440

 Score = 55.9 bits (135), Expect = 1e-08
 Identities = 32/148 (21%), Positives = 51/148 (34%), Gaps = 4/148 (2%)

Query: 324 TNLESINLSFTGISDGSLRKLAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLFGAR 383
           TN   +NL    I    +     L  L+ L L    I    + A   L  L  L+LF  R
Sbjct: 64  TNTRLLNLHENQIQIIKVNSFKHLRHLEILQLSRNHIRTIEIGAFNGLANLNTLELFDNR 123

Query: 384 ITDSGAAYLRNFKNLRSLEICGGGLTDAGVKHIKDLSSLTLLNLSQNCNLTDKTLELISG 443
           +T            L+ L +    +          + SL  L+L +   L+  +     G
Sbjct: 124 LTTIPNGAFVYLSKLKELWLRNNPIESIPSYAFNRIPSLRRLDLGELKRLSYISEGAFEG 183

Query: 444 LTGLVSLNVSNSRITS----AGLRHLNH 467
           L+ L  LN++   +        L  L+ 
Sbjct: 184 LSNLRYLNLAMCNLREIPNLTPLIKLDE 211

>3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae} Length = 317

 Score = 87.4 bits (217), Expect = 3e-19
 Identities = 46/239 (19%), Positives = 88/239 (36%), Gaps = 15/239 (6%)

Query: 222 DSLSALGSLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESL 281
           +            +    L            ++K L+L  N ++      L   T LE L
Sbjct: 4   EIKQNGNRYKIEKVTDSSLKQALASLRQSAWNVKELDLSGNPLSQISAADLAPFTKLELL 63

Query: 282 NLDSCGIGDEGLVNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISDGSL 341
           NL S  +     ++L  L  L+ L+L++       ++ L    ++E+++ +   IS  S 
Sbjct: 64  NLSSNVL--YETLDLESLSTLRTLDLNNNY-----VQELLVGPSIETLHAANNNISRVSC 116

Query: 342 RKLAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLFGARITD-SGAAYLRNFKNLRS 400
            +       K++ L   +IT          + + +LDL    I   + A    +   L  
Sbjct: 117 SR---GQGKKNIYLANNKITMLRDLDEGCRSRVQYLDLKLNEIDTVNFAELAASSDTLEH 173

Query: 401 LEICGGGLTDAGVKHIKDLSSLTLLNLSQNCNLTDKTLELISGLTGLVSLNVSNSRITS 459
           L +    + D  VK     + L  L+LS N  L     E      G+  +++ N+++  
Sbjct: 174 LNLQYNFIYD--VKGQVVFAKLKTLDLSSN-KLAFMGPE-FQSAAGVTWISLRNNKLVL 228

>3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae} Length = 317

 Score = 86.2 bits (214), Expect = 6e-19
 Identities = 46/266 (17%), Positives = 98/266 (36%), Gaps = 20/266 (7%)

Query: 203 LQKLTLLNLEGCPVTAACLDSLSALGSLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFN 262
             +  +  +    +  A      +  ++  L+L+   LS       +    L++LNL  N
Sbjct: 9   GNRYKIEKVTDSSLKQALASLRQSAWNVKELDLSGNPLSQISAADLAPFTKLELLNLSSN 68

Query: 263 EITDECLVHLKGLTNLESLNLDSCGIGDEGLVNLTGLCNLKCLELSDTQVGSSGLRHLSG 322
            + +   + L+ L+ L +L+L++  + +     L    +++ L  ++  +         G
Sbjct: 69  VLYE--TLDLESLSTLRTLDLNNNYVQE-----LLVGPSIETLHAANNNISRVSCSRGQG 121

Query: 323 LTNLESINLSFTGISDGSLRKLAGLSSLKSLNLDARQITDTGLAAL-TSLTGLTHLDLFG 381
             N+    L+   I+          S ++ L+L   +I     A L  S   L HL+L  
Sbjct: 122 KKNI---YLANNKITMLRDLDEGCRSRVQYLDLKLNEIDTVNFAELAASSDTLEHLNLQY 178

Query: 382 ARITD-SGAAYLRNFKNLRSLEICGGGLTDAGVKHIKDLSSLTLLNLSQNCNLTDKTL-E 439
             I D  G         L++L++    L   G    +  + +T ++L  N  L    + +
Sbjct: 179 NFIYDVKGQVVF---AKLKTLDLSSNKLAFMG-PEFQSAAGVTWISLRNN-KLV--LIEK 231

Query: 440 LISGLTGLVSLNVSNSRITSAGLRHL 465
            +     L   ++  +      LR  
Sbjct: 232 ALRFSQNLEHFDLRGNGFHCGTLRDF 257

>3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae} Length = 317

 Score = 84.3 bits (209), Expect = 3e-18
 Identities = 52/291 (17%), Positives = 107/291 (36%), Gaps = 17/291 (5%)

Query: 154 LMKLESLNIKWCNCITDSDMKPLSGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEG 213
             + +   +   + +  +         N+K L +S + ++    A L    KL LLNL  
Sbjct: 9   GNRYKIEKV-TDSSLKQALASLRQSAWNVKELDLSGNPLSQISAADLAPFTKLELLNLSS 67

Query: 214 CPVTAACLDSLSALGSLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLK 273
             +       L +L +L  L+LN   + +          S++ L+   N I+    V   
Sbjct: 68  NVLYE--TLDLESLSTLRTLDLNNNYVQE-----LLVGPSIETLHAANNNISR---VSCS 117

Query: 274 GLTNLESLNLDSCGIGDEGLVNLTGLCNLKCLELSDTQVGSSGLRHLSG-LTNLESINLS 332
                +++ L +  I     ++      ++ L+L   ++ +     L+     LE +NL 
Sbjct: 118 RGQGKKNIYLANNKITMLRDLDEGCRSRVQYLDLKLNEIDTVNFAELAASSDTLEHLNLQ 177

Query: 333 FTGISDGSLRKLAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLFGARITDSGAAYL 392
           +  I    ++     + LK+L+L + ++   G     S  G+T + L   ++     A L
Sbjct: 178 YNFIY--DVKGQVVFAKLKTLDLSSNKLAFMG-PEFQSAAGVTWISLRNNKLVLIEKA-L 233

Query: 393 RNFKNLRSLEICGGGLT-DAGVKHIKDLSSLTLLNLSQNCNLTDKTLELIS 442
           R  +NL   ++ G G               +  +       LT +  E  +
Sbjct: 234 RFSQNLEHFDLRGNGFHCGTLRDFFSKNQRVQTVAKQTVKKLTGQNEEECT 284

>3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae} Length = 317

 Score = 75.4 bits (186), Expect = 3e-15
 Identities = 47/326 (14%), Positives = 107/326 (32%), Gaps = 23/326 (7%)

Query: 81  SNLQSLDFNFCIQISDGGLEHLRGLSNLTSLSFRRNNAITAQGMKAFAGLINLVKLDLER 140
           +  +         +        +   N+  L    N  ++       A    L  L+L  
Sbjct: 10  NRYKIEKVTDS-SLKQALASLRQSAWNVKELDLSGNP-LSQISAADLAPFTKLELLNLSS 67

Query: 141 CTRIHGGLVNLKGLMKLESLNIKWCNCITDSDMKPLSGLTNLKSLQISCSKVTDSGIAYL 200
              ++   ++L+ L  L +L++   N + +     L    ++++L  + + ++    +  
Sbjct: 68  N-VLY-ETLDLESLSTLRTLDLNN-NYVQE-----LLVGPSIETLHAANNNISRVSCSRG 119

Query: 201 KGLQKLTLLNLEGCPVTAACLDSLSALGSLFYLNLNRCQLSD-DGCEKFSKIGSLKVLNL 259
           +G +    + L    +T            + YL+L   ++   +  E  +   +L+ LNL
Sbjct: 120 QGKKN---IYLANNKITMLRDLDEGCRSRVQYLDLKLNEIDTVNFAELAASSDTLEHLNL 176

Query: 260 GFNEITDECLVHLKGLTNLESLNLDSCGIG--DEGLVNLTGLCNLKCLELSDTQVGSSGL 317
            +N I D  +        L++L+L S  +        +      +  + L + ++     
Sbjct: 177 QYNFIYD--VKGQVVFAKLKTLDLSSNKLAFMGPEFQSAA---GVTWISLRNNKL-VLIE 230

Query: 318 RHLSGLTNLESINLSFTGISDGSLRKLAGLSSLKSLNLDARQITDTGLAALTSLTGLTHL 377
           + L    NLE  +L   G   G+LR      + +   +  + +           T  T  
Sbjct: 231 KALRFSQNLEHFDLRGNGFHCGTLRDFF-SKNQRVQTVAKQTVKKLTGQNEEECTVPTLG 289

Query: 378 DLFGARITDSGAAYLRNFKNLRSLEI 403
                   D  A +      L     
Sbjct: 290 HYGAYCCEDLPAPFADRLIALGHHHH 315

>3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae} Length = 317

 Score = 41.9 bits (99), Expect = 3e-04
 Identities = 18/101 (17%), Positives = 44/101 (43%), Gaps = 7/101 (6%)

Query: 370 SLTGLTHLDLFGARITDSGAAYLRNFKNLRSLEICGGGLTDAGVKHIKDLSSLTLLNLSQ 429
           +        +  + +  + A+  ++  N++ L++ G  L+      +   + L LLNLS 
Sbjct: 8   NGNRYKIEKVTDSSLKQALASLRQSAWNVKELDLSGNPLSQISAADLAPFTKLELLNLSS 67

Query: 430 NCNLTDKTLELISGLTGLVSLNVSNSRITS----AGLRHLN 466
           N  L +     +  L+ L +L+++N+ +        +  L+
Sbjct: 68  N-VLYE--TLDLESLSTLRTLDLNNNYVQELLVGPSIETLH 105

>3e4g_A ATP synthase subunit S, mitochondrial; leucine-rich repeat, CF0, hydrogen ION transport, inner membrane, ION transport, membrane, mitochondrion; 0.96A {Bos taurus} PDB: 3e3z_A 3dze_A 3e2j_A Length = 176

 Score = 83.7 bits (207), Expect = 4e-19
 Identities = 23/132 (17%), Positives = 52/132 (39%), Gaps = 22/132 (16%)

Query: 59  LLSVDLSGSDVTDSGLIHLKDCSNLQSLDFNFCIQISDGGLEHLRGLSNLTSLSFRRNNA 118
           + ++D + S +   G  H++    ++ +    C  I DG LE L  L NL          
Sbjct: 63  IQAIDATDSCIMSIGFDHMEGLQYVEKIRLCKCHYIEDGCLERLSQLENLQK-------- 114

Query: 119 ITAQGMKAFAGLINLVKLDLERCTRI-HGGLVNLKGLMKLESLNIKWCNCITDSDMKPLS 177
                        +++++++  C  +   G++ L     L+ L +     + + +    +
Sbjct: 115 -------------SMLEMEIISCGNVTDKGIIALHHFRNLKYLFLSDLPGVKEKEKIVQA 161

Query: 178 GLTNLKSLQISC 189
             T+L SL++  
Sbjct: 162 FKTSLPSLELKL 173

>3e4g_A ATP synthase subunit S, mitochondrial; leucine-rich repeat, CF0, hydrogen ION transport, inner membrane, ION transport, membrane, mitochondrion; 0.96A {Bos taurus} PDB: 3e3z_A 3dze_A 3e2j_A Length = 176

 Score = 74.1 bits (182), Expect = 9e-16
 Identities = 21/110 (19%), Positives = 42/110 (38%), Gaps = 7/110 (6%)

Query: 277 NLESLNLDSCGIGDEGLVNLTGLCNLKCLELSD-TQVGSSGLRHLSGLTN----LESINL 331
            +++++     I   G  ++ GL  ++ + L     +    L  LS L N    +  + +
Sbjct: 62  KIQAIDATDSCIMSIGFDHMEGLQYVEKIRLCKCHYIEDGCLERLSQLENLQKSMLEMEI 121

Query: 332 SF-TGISDGSLRKLAGLSSLKSLNL-DARQITDTGLAALTSLTGLTHLDL 379
                ++D  +  L    +LK L L D   + +         T L  L+L
Sbjct: 122 ISCGNVTDKGIIALHHFRNLKYLFLSDLPGVKEKEKIVQAFKTSLPSLEL 171

>3e4g_A ATP synthase subunit S, mitochondrial; leucine-rich repeat, CF0, hydrogen ION transport, inner membrane, ION transport, membrane, mitochondrion; 0.96A {Bos taurus} PDB: 3e3z_A 3dze_A 3e2j_A Length = 176

 Score = 72.2 bits (177), Expect = 5e-15
 Identities = 29/116 (25%), Positives = 46/116 (39%), Gaps = 6/116 (5%)

Query: 127 FAGLINLVKLDLERCTRIHGGLVNLKGLMKLESLNIKWCNCITDSDMKPLSGLTN----L 182
                 +  +D      +  G  +++GL  +E + +  C+ I D  ++ LS L N    +
Sbjct: 57  PLDKYKIQAIDATDSCIMSIGFDHMEGLQYVEKIRLCKCHYIEDGCLERLSQLENLQKSM 116

Query: 183 KSLQIS-CSKVTDSGIAYLKGLQKLTLLNLEGCP-VTAACLDSLSALGSLFYLNLN 236
             ++I  C  VTD GI  L   + L  L L   P V        +   SL  L L 
Sbjct: 117 LEMEIISCGNVTDKGIIALHHFRNLKYLFLSDLPGVKEKEKIVQAFKTSLPSLELK 172

>3e4g_A ATP synthase subunit S, mitochondrial; leucine-rich repeat, CF0, hydrogen ION transport, inner membrane, ION transport, membrane, mitochondrion; 0.96A {Bos taurus} PDB: 3e3z_A 3dze_A 3e2j_A Length = 176

 Score = 71.0 bits (174), Expect = 1e-14
 Identities = 28/113 (24%), Positives = 50/113 (44%), Gaps = 7/113 (6%)

Query: 298 GLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSF-TGISDGSLRKLAGLS----SLKS 352
               ++ ++ +D+ + S G  H+ GL  +E I L     I DG L +L+ L     S+  
Sbjct: 59  DKYKIQAIDATDSCIMSIGFDHMEGLQYVEKIRLCKCHYIEDGCLERLSQLENLQKSMLE 118

Query: 353 LNLDA-RQITDTGLAALTSLTGLTHLDLFG-ARITDSGAAYLRNFKNLRSLEI 403
           + + +   +TD G+ AL     L +L L     + +          +L SLE+
Sbjct: 119 MEIISCGNVTDKGIIALHHFRNLKYLFLSDLPGVKEKEKIVQAFKTSLPSLEL 171

>3e4g_A ATP synthase subunit S, mitochondrial; leucine-rich repeat, CF0, hydrogen ION transport, inner membrane, ION transport, membrane, mitochondrion; 0.96A {Bos taurus} PDB: 3e3z_A 3dze_A 3e2j_A Length = 176

 Score = 67.2 bits (164), Expect = 2e-13
 Identities = 31/146 (21%), Positives = 56/146 (38%), Gaps = 23/146 (15%)

Query: 167 CITDSDMKPLSGLTNLK--SLQISCSKVTDSGIAYLKGLQKLTLLNLEGCP-VTAACLDS 223
              D +  P   L   K  ++  + S +   G  +++GLQ +  + L  C  +   CL+ 
Sbjct: 46  WQKDYNHLPTGPLDKYKIQAIDATDSCIMSIGFDHMEGLQYVEKIRLCKCHYIEDGCLER 105

Query: 224 LSALGSLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNL 283
           LS L +L    L   ++    C                  +TD+ ++ L    NL+ L L
Sbjct: 106 LSQLENLQKSML---EMEIISCGN----------------VTDKGIIALHHFRNLKYLFL 146

Query: 284 DSC-GIGDEGLVNLTGLCNLKCLELS 308
               G+ ++  +      +L  LEL 
Sbjct: 147 SDLPGVKEKEKIVQAFKTSLPSLELK 172

>3e4g_A ATP synthase subunit S, mitochondrial; leucine-rich repeat, CF0, hydrogen ION transport, inner membrane, ION transport, membrane, mitochondrion; 0.96A {Bos taurus} PDB: 3e3z_A 3dze_A 3e2j_A Length = 176

 Score = 65.2 bits (159), Expect = 1e-12
 Identities = 26/131 (19%), Positives = 49/131 (37%), Gaps = 22/131 (16%)

Query: 325 NLESINLSFTGISDGSLRKLAGLSSLKSLNL-DARQITDTGLAALTSLTGLTHLDLFGAR 383
            +++I+ + + I       + GL  ++ + L     I D  L  L+ L  L         
Sbjct: 62  KIQAIDATDSCIMSIGFDHMEGLQYVEKIRLCKCHYIEDGCLERLSQLENLQK------- 114

Query: 384 ITDSGAAYLRNFKNLRSLEICG-GGLTDAGVKHIKDLSSLTLLNLSQNCNLTDKTLELIS 442
                        ++  +EI   G +TD G+  +    +L  L LS    + +K   + +
Sbjct: 115 -------------SMLEMEIISCGNVTDKGIIALHHFRNLKYLFLSDLPGVKEKEKIVQA 161

Query: 443 GLTGLVSLNVS 453
             T L SL + 
Sbjct: 162 FKTSLPSLELK 172

>3e4g_A ATP synthase subunit S, mitochondrial; leucine-rich repeat, CF0, hydrogen ION transport, inner membrane, ION transport, membrane, mitochondrion; 0.96A {Bos taurus} PDB: 3e3z_A 3dze_A 3e2j_A Length = 176

 Score = 61.0 bits (148), Expect = 3e-11
 Identities = 14/99 (14%), Positives = 36/99 (36%), Gaps = 6/99 (6%)

Query: 373 GLTHLDLFGARITDSGAAYLRNFKNLRSLEICG-GGLTDAGVKHIKDLS----SLTLLNL 427
            +  +D   + I   G  ++   + +  + +C    + D  ++ +  L     S+  + +
Sbjct: 62  KIQAIDATDSCIMSIGFDHMEGLQYVEKIRLCKCHYIEDGCLERLSQLENLQKSMLEMEI 121

Query: 428 SQNCNLTDKTLELISGLTGLVSLNVSN-SRITSAGLRHL 465
               N+TDK +  +     L  L +S+   +        
Sbjct: 122 ISCGNVTDKGIIALHHFRNLKYLFLSDLPGVKEKEKIVQ 160

>3e4g_A ATP synthase subunit S, mitochondrial; leucine-rich repeat, CF0, hydrogen ION transport, inner membrane, ION transport, membrane, mitochondrion; 0.96A {Bos taurus} PDB: 3e3z_A 3dze_A 3e2j_A Length = 176

 Score = 49.1 bits (117), Expect = 5e-07
 Identities = 13/76 (17%), Positives = 34/76 (44%), Gaps = 5/76 (6%)

Query: 397 NLRSLEICGGGLTDAGVKHIKDLSSLTLLNLSQNCNLTDKTLELISGLTG----LVSLNV 452
            +++++     +   G  H++ L  +  + L +   + D  LE +S L      ++ + +
Sbjct: 62  KIQAIDATDSCIMSIGFDHMEGLQYVEKIRLCKCHYIEDGCLERLSQLENLQKSMLEMEI 121

Query: 453 SN-SRITSAGLRHLNH 467
            +   +T  G+  L+H
Sbjct: 122 ISCGNVTDKGIIALHH 137

>3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A Length = 452

 Score = 87.1 bits (216), Expect = 1e-18
 Identities = 47/228 (20%), Positives = 80/228 (35%), Gaps = 7/228 (3%)

Query: 206 LTLLNLEGCPVTAACLDSLSALGSLFYLNLNRCQLS--DDGCEKFSKIGSLKVLNLGFNE 263
              LNL    +     D+   L  L  L L R  +   + G   F+ + SL  L L  N 
Sbjct: 77  TRYLNLMENNIQMIQADTFRHLHHLEVLQLGRNSIRQIEVGA--FNGLASLNTLELFDNW 134

Query: 264 ITDECLVHLKGLTNLESLNLDSCGIGDEGLVNLTGLCNLKCLELSDT-QVGSSGLRHLSG 322
           +T       + L+ L  L L +  I          + +L  L+L +  ++         G
Sbjct: 135 LTVIPSGAFEYLSKLRELWLRNNPIESIPSYAFNRVPSLMRLDLGELKKLEYISEGAFEG 194

Query: 323 LTNLESINLSFTGISDGSLRKLAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLFGA 382
           L NL+ +NL    I    +  L  L  L+ L +      +    +   L+ L  L +  +
Sbjct: 195 LFNLKYLNLGMCNIK--DMPNLTPLVGLEELEMSGNHFPEIRPGSFHGLSSLKKLWVMNS 252

Query: 383 RITDSGAAYLRNFKNLRSLEICGGGLTDAGVKHIKDLSSLTLLNLSQN 430
           +++           +L  L +    L+         L  L  L+L  N
Sbjct: 253 QVSLIERNAFDGLASLVELNLAHNNLSSLPHDLFTPLRYLVELHLHHN 300

>3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A Length = 452

 Score = 84.8 bits (210), Expect = 6e-18
 Identities = 51/210 (24%), Positives = 80/210 (38%), Gaps = 8/210 (3%)

Query: 253 SLKVLNLGFNEITDECLVHLKGLTNLESLNLDSCGIG--DEGLVNLTGLCNLKCLELSDT 310
           + + LNL  N I        + L +LE L L    I   + G     GL +L  LEL D 
Sbjct: 76  NTRYLNLMENNIQMIQADTFRHLHHLEVLQLGRNSIRQIEVGA--FNGLASLNTLELFDN 133

Query: 311 QVGSSGLRHLSGLTNLESINLSFTGISDGSLRKLAGLSSLKSLNL-DARQITDTGLAALT 369
            +          L+ L  + L    I          + SL  L+L + +++      A  
Sbjct: 134 WLTVIPSGAFEYLSKLRELWLRNNPIESIPSYAFNRVPSLMRLDLGELKKLEYISEGAFE 193

Query: 370 SLTGLTHLDLFGARITDSGAAYLRNFKNLRSLEICGGGLTDAGVKHIKDLSSLTLLNLSQ 429
            L  L +L+L    I D     L     L  LE+ G    +        LSSL  L +  
Sbjct: 194 GLFNLKYLNLGMCNIKDMPN--LTPLVGLEELEMSGNHFPEIRPGSFHGLSSLKKLWVMN 251

Query: 430 NCNLTDKTLELISGLTGLVSLNVSNSRITS 459
           +  ++        GL  LV LN++++ ++S
Sbjct: 252 S-QVSLIERNAFDGLASLVELNLAHNNLSS 280

>3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A Length = 452

 Score = 79.8 bits (197), Expect = 3e-16
 Identities = 50/230 (21%), Positives = 84/230 (36%), Gaps = 9/230 (3%)

Query: 106 SNLTSLSFRRNNAITAQGMKAFAGLINLVKLDLERC--TRIHGGLVNLKGLMKLESLNIK 163
           SN   L+   NN I       F  L +L  L L R    +I  G     GL  L +L + 
Sbjct: 75  SNTRYLNLMENN-IQMIQADTFRHLHHLEVLQLGRNSIRQIEVGA--FNGLASLNTLELF 131

Query: 164 WCNCITDSDMKPLSGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCP-VTAACLD 222
             N +T         L+ L+ L +  + +          +  L  L+L     +      
Sbjct: 132 D-NWLTVIPSGAFEYLSKLRELWLRNNPIESIPSYAFNRVPSLMRLDLGELKKLEYISEG 190

Query: 223 SLSALGSLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLN 282
           +   L +L YLNL  C + D      + +  L+ L +  N   +       GL++L+ L 
Sbjct: 191 AFEGLFNLKYLNLGMCNIKDM--PNLTPLVGLEELEMSGNHFPEIRPGSFHGLSSLKKLW 248

Query: 283 LDSCGIGDEGLVNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLS 332
           + +  +         GL +L  L L+   + S      + L  L  ++L 
Sbjct: 249 VMNSQVSLIERNAFDGLASLVELNLAHNNLSSLPHDLFTPLRYLVELHLH 298

>3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A Length = 452

 Score = 79.4 bits (196), Expect = 4e-16
 Identities = 48/207 (23%), Positives = 70/207 (33%), Gaps = 8/207 (3%)

Query: 81  SNLQSLDFNFCIQISDGGLEHLRGLSNLTSLSFRRNNAITAQGMKAFAGLINLVKLDLER 140
            +L+ L       I    +    GL++L +L    N  +T     AF  L  L +L L  
Sbjct: 99  HHLEVLQLGRN-SIRQIEVGAFNGLASLNTLELFDNW-LTVIPSGAFEYLSKLRELWLRN 156

Query: 141 C--TRIHGGLVNLKGLMKLESLNIKWCNCITDSDMKPLSGLTNLKSLQISCSKVTDSGIA 198
                I         +  L  L++     +         GL NLK L +    + D  + 
Sbjct: 157 NPIESIPSYA--FNRVPSLMRLDLGELKKLEYISEGAFEGLFNLKYLNLGMCNIKD--MP 212

Query: 199 YLKGLQKLTLLNLEGCPVTAACLDSLSALGSLFYLNLNRCQLSDDGCEKFSKIGSLKVLN 258
            L  L  L  L + G         S   L SL  L +   Q+S      F  + SL  LN
Sbjct: 213 NLTPLVGLEELEMSGNHFPEIRPGSFHGLSSLKKLWVMNSQVSLIERNAFDGLASLVELN 272

Query: 259 LGFNEITDECLVHLKGLTNLESLNLDS 285
           L  N ++         L  L  L+L  
Sbjct: 273 LAHNNLSSLPHDLFTPLRYLVELHLHH 299

>3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A Length = 452

 Score = 64.0 bits (156), Expect = 3e-11
 Identities = 39/174 (22%), Positives = 61/174 (35%), Gaps = 10/174 (5%)

Query: 301 NLKCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISDGSLRKLAGLSSLKSLNLDARQI 360
           N + L L +  +          L +LE + L    I    +    GL+SL +L L    +
Sbjct: 76  NTRYLNLMENNIQMIQADTFRHLHHLEVLQLGRNSIRQIEVGAFNGLASLNTLELFDNWL 135

Query: 361 TDTGLAALTSLTGLTHLDLFGARITDSGAAYLRNFKNLRSLEICGGG-LTDAGVKHIKDL 419
           T     A   L+ L  L L    I    +       +L  L++     L        + L
Sbjct: 136 TVIPSGAFEYLSKLRELWLRNNPIESIPSYAFNRVPSLMRLDLGELKKLEYISEGAFEGL 195

Query: 420 SSLTLLNLSQNCNLTDKTLELISGLTGLVSLNVSNSRITS------AGLRHLNH 467
            +L  LNL    N+ D  +  ++ L GL  L +S +           GL  L  
Sbjct: 196 FNLKYLNLGMC-NIKD--MPNLTPLVGLEELEMSGNHFPEIRPGSFHGLSSLKK 246

>3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A Length = 452

 Score = 55.5 bits (134), Expect = 1e-08
 Identities = 32/148 (21%), Positives = 46/148 (31%), Gaps = 4/148 (2%)

Query: 324 TNLESINLSFTGISDGSLRKLAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLFGAR 383
           +N   +NL    I          L  L+ L L    I    + A   L  L  L+LF   
Sbjct: 75  SNTRYLNLMENNIQMIQADTFRHLHHLEVLQLGRNSIRQIEVGAFNGLASLNTLELFDNW 134

Query: 384 ITDSGAAYLRNFKNLRSLEICGGGLTDAGVKHIKDLSSLTLLNLSQNCNLTDKTLELISG 443
           +T   +        LR L +    +          + SL  L+L +   L   +     G
Sbjct: 135 LTVIPSGAFEYLSKLRELWLRNNPIESIPSYAFNRVPSLMRLDLGELKKLEYISEGAFEG 194

Query: 444 LTGLVSLNVSNSRITS----AGLRHLNH 467
           L  L  LN+    I        L  L  
Sbjct: 195 LFNLKYLNLGMCNIKDMPNLTPLVGLEE 222

>2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like receptor, MD-2, LPS, leucine-rich repeat, glycoprotein, immune response; HET: NAG BMA FUL; 1.90A {Eptatretus burgeri} Length = 306

 Score = 82.0 bits (203), Expect = 1e-17
 Identities = 48/211 (22%), Positives = 78/211 (36%), Gaps = 6/211 (2%)

Query: 253 SLKVLNLGFNEITDECLVHLKGLTNLESLNLDSCGIGDEGLVNLT--GLCNLKCLELSDT 310
           S   L L  N++          LT L  L+L S G+  +G  + +  G  +LK L+LS  
Sbjct: 29  SATRLELESNKLQSLPHGVFDKLTQLTKLSLSSNGLSFKGCCSQSDFGTTSLKYLDLSFN 88

Query: 311 QVGSSGLRHLSGLTNLESINLSFTGISD-GSLRKLAGLSSLKSLNLDARQITDTGLAALT 369
            V +    +  GL  LE ++   + +           L +L  L++              
Sbjct: 89  GVITMS-SNFLGLEQLEHLDFQHSNLKQMSEFSVFLSLRNLIYLDISHTHTRVAFNGIFN 147

Query: 370 SLTGLTHLDLFGARITDSGAAY-LRNFKNLRSLEICGGGLTDAGVKHIKDLSSLTLLNLS 428
            L+ L  L + G    ++         +NL  L++    L          LSSL +LN+S
Sbjct: 148 GLSSLEVLKMAGNSFQENFLPDIFTELRNLTFLDLSQCQLEQLSPTAFNSLSSLQVLNMS 207

Query: 429 QNCNLTDKTLELISGLTGLVSLNVSNSRITS 459
            N N           L  L  L+ S + I +
Sbjct: 208 HN-NFFSLDTFPYKCLNSLQVLDYSLNHIMT 237

>2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like receptor, MD-2, LPS, leucine-rich repeat, glycoprotein, immune response; HET: NAG BMA FUL; 1.90A {Eptatretus burgeri} Length = 306

 Score = 81.6 bits (202), Expect = 3e-17
 Identities = 51/233 (21%), Positives = 87/233 (37%), Gaps = 11/233 (4%)

Query: 229 SLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEIT--DECLVHLKGLTNLESLNLDSC 286
           S   L L   +L       F K+  L  L+L  N ++    C     G T+L+ L+L   
Sbjct: 29  SATRLELESNKLQSLPHGVFDKLTQLTKLSLSSNGLSFKGCCSQSDFGTTSLKYLDLSFN 88

Query: 287 GIGD--EGLVNLTGLCNLKCLELSDTQVGS-SGLRHLSGLTNLESINLSFTGISDGSLRK 343
           G+       + L     L+ L+   + +   S       L NL  +++S T         
Sbjct: 89  GVITMSSNFLGLE---QLEHLDFQHSNLKQMSEFSVFLSLRNLIYLDISHTHTRVAFNGI 145

Query: 344 LAGLSSLKSLNLDA-RQITDTGLAALTSLTGLTHLDLFGARITDSGAAYLRNFKNLRSLE 402
             GLSSL+ L +       +      T L  LT LDL   ++         +  +L+ L 
Sbjct: 146 FNGLSSLEVLKMAGNSFQENFLPDIFTELRNLTFLDLSQCQLEQLSPTAFNSLSSLQVLN 205

Query: 403 ICGGGLTDAGVKHIKDLSSLTLLNLSQNCNLTDKTLELISGL-TGLVSLNVSN 454
           +             K L+SL +L+ S N ++     + +    + L  LN++ 
Sbjct: 206 MSHNNFFSLDTFPYKCLNSLQVLDYSLN-HIMTSKKQELQHFPSSLAFLNLTQ 257

>2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like receptor, MD-2, LPS, leucine-rich repeat, glycoprotein, immune response; HET: NAG BMA FUL; 1.90A {Eptatretus burgeri} Length = 306

 Score = 81.2 bits (201), Expect = 3e-17
 Identities = 54/236 (22%), Positives = 91/236 (38%), Gaps = 18/236 (7%)

Query: 206 LTLLNLEGCPVTAACLDSLSALGSLFYLNLNRCQLSDDGCEK--FSKIGSLKVLNLGFNE 263
            T L LE   + +        L  L  L+L+   LS  GC         SLK L+L FN 
Sbjct: 30  ATRLELESNKLQSLPHGVFDKLTQLTKLSLSSNGLSFKGCCSQSDFGTTSLKYLDLSFNG 89

Query: 264 ITDECL-VHLKGLTNLESLNLDSCGIG---DEGLVNLTGLCNLKCLELSDTQVGSSGLRH 319
           +    +  +  GL  LE L+     +    +  +     L NL  L++S T    +    
Sbjct: 90  VIT--MSSNFLGLEQLEHLDFQHSNLKQMSEFSV--FLSLRNLIYLDISHTHTRVAFNGI 145

Query: 320 LSGLTNLESINLSF----TGISDGSLRKLAGLSSLKSLNLDARQITDTGLAALTSLTGLT 375
            +GL++LE + ++                  L +L  L+L   Q+      A  SL+ L 
Sbjct: 146 FNGLSSLEVLKMAGNSFQENFLPDIFT---ELRNLTFLDLSQCQLEQLSPTAFNSLSSLQ 202

Query: 376 HLDLFGARITDSGAAYLRNFKNLRSLEICGGGLTDAGVKHIKDL-SSLTLLNLSQN 430
            L++             +   +L+ L+     +  +  + ++   SSL  LNL+QN
Sbjct: 203 VLNMSHNNFFSLDTFPYKCLNSLQVLDYSLNHIMTSKKQELQHFPSSLAFLNLTQN 258

>2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like receptor, MD-2, LPS, leucine-rich repeat, glycoprotein, immune response; HET: NAG BMA FUL; 1.90A {Eptatretus burgeri} Length = 306

 Score = 76.6 bits (189), Expect = 1e-15
 Identities = 54/258 (20%), Positives = 89/258 (34%), Gaps = 36/258 (13%)

Query: 106 SNLTSLSFRRNNAITAQGMKAFAGLINLVKLDLERCTRIHGGLVNLKGLMKLESLNIKWC 165
           S+ T L    N  + +     F  L  L KL L                           
Sbjct: 28  SSATRLELESNK-LQSLPHGVFDKLTQLTKLSLSS------------------------- 61

Query: 166 NCITDSDMKP--LSGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTA-ACLD 222
           N ++          G T+LK L +S + V     +   GL++L  L+ +   +   +   
Sbjct: 62  NGLSFKGCCSQSDFGTTSLKYLDLSFNGVITMS-SNFLGLEQLEHLDFQHSNLKQMSEFS 120

Query: 223 SLSALGSLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVH-LKGLTNLESL 281
              +L +L YL+++           F+ + SL+VL +  N   +  L      L NL  L
Sbjct: 121 VFLSLRNLIYLDISHTHTRVAFNGIFNGLSSLEVLKMAGNSFQENFLPDIFTELRNLTFL 180

Query: 282 NLDSCGIGDEGLVNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSF---TGISD 338
           +L  C +          L +L+ L +S     S        L +L+ ++ S         
Sbjct: 181 DLSQCQLEQLSPTAFNSLSSLQVLNMSHNNFFSLDTFPYKCLNSLQVLDYSLNHIMTSKK 240

Query: 339 GSLRKLAGLSSLKSLNLD 356
             L+     SSL  LNL 
Sbjct: 241 QELQHF--PSSLAFLNLT 256

>2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like receptor, MD-2, LPS, leucine-rich repeat, glycoprotein, immune response; HET: NAG BMA FUL; 1.90A {Eptatretus burgeri} Length = 306

 Score = 67.0 bits (164), Expect = 2e-12
 Identities = 48/213 (22%), Positives = 77/213 (36%), Gaps = 13/213 (6%)

Query: 57  SSLLSVDLSGSDVTDSGLIH--LKDCSNLQSLD--FNFCIQISDGGLEHLRGLSNLTSLS 112
           + L  + LS + ++  G         ++L+ LD  FN  I +S        GL  L  L 
Sbjct: 52  TQLTKLSLSSNGLSFKGCCSQSDFGTTSLKYLDLSFNGVITMSSN----FLGLEQLEHLD 107

Query: 113 FRRNNAITAQGMKAFAGLINLVKLDLERC--TRIHGGLVNLKGLMKLESLNIKWCNCITD 170
           F+ +N         F  L NL+ LD+          G+    GL  LE L +   +   +
Sbjct: 108 FQHSNLKQMSEFSVFLSLRNLIYLDISHTHTRVAFNGI--FNGLSSLEVLKMAGNSFQEN 165

Query: 171 SDMKPLSGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACLDSLSALGSL 230
                 + L NL  L +S  ++          L  L +LN+      +        L SL
Sbjct: 166 FLPDIFTELRNLTFLDLSQCQLEQLSPTAFNSLSSLQVLNMSHNNFFSLDTFPYKCLNSL 225

Query: 231 FYLNLNRCQLSDDGCEKFSKI-GSLKVLNLGFN 262
             L+ +   +     ++      SL  LNL  N
Sbjct: 226 QVLDYSLNHIMTSKKQELQHFPSSLAFLNLTQN 258

>2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like receptor, MD-2, LPS, leucine-rich repeat, glycoprotein, immune response; HET: NAG BMA FUL; 1.90A {Eptatretus burgeri} Length = 306

 Score = 61.6 bits (150), Expect = 1e-10
 Identities = 40/176 (22%), Positives = 68/176 (38%), Gaps = 10/176 (5%)

Query: 301 NLKCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISDGSLRKLA--GLSSLKSLNLDAR 358
           +   LEL   ++ S        LT L  ++LS  G+S       +  G +SLK L+L   
Sbjct: 29  SATRLELESNKLQSLPHGVFDKLTQLTKLSLSSNGLSFKGCCSQSDFGTTSLKYLDLSFN 88

Query: 359 QITDTGLAALTSLTGLTHLDLFGARITD-SGAAYLRNFKNLRSLEICGGGLTDAGVKHIK 417
            +     +    L  L HLD   + +   S  +   + +NL  L+I       A      
Sbjct: 89  GVITMS-SNFLGLEQLEHLDFQHSNLKQMSEFSVFLSLRNLIYLDISHTHTRVAFNGIFN 147

Query: 418 DLSSLTLLNLSQNCNLTDKTLELISGLTGLVSLNVSNSRITS------AGLRHLNH 467
            LSSL +L ++ N    +   ++ + L  L  L++S  ++          L  L  
Sbjct: 148 GLSSLEVLKMAGNSFQENFLPDIFTELRNLTFLDLSQCQLEQLSPTAFNSLSSLQV 203

>2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like receptor, MD-2, LPS, leucine-rich repeat, glycoprotein, immune response; HET: NAG BMA FUL; 1.90A {Eptatretus burgeri} Length = 306

 Score = 41.2 bits (97), Expect = 4e-04
 Identities = 23/128 (17%), Positives = 44/128 (34%), Gaps = 9/128 (7%)

Query: 348 SSLKSLNLDARQITDTGLAALTSLTGLTHLDLFGARIT--DSGAAYLRNFKNLRSLEICG 405
           SS   L L++ ++          LT LT L L    ++     +       +L+ L++  
Sbjct: 28  SSATRLELESNKLQSLPHGVFDKLTQLTKLSLSSNGLSFKGCCSQSDFGTTSLKYLDLSF 87

Query: 406 GGLTDAGVKHIKDLSSLTLLNLSQNCNLTDKTLELISGLTGLVSLNVSNSRITS------ 459
            G+      +   L  L  L+   +         +   L  L+ L++S++          
Sbjct: 88  NGVITM-SSNFLGLEQLEHLDFQHSNLKQMSEFSVFLSLRNLIYLDISHTHTRVAFNGIF 146

Query: 460 AGLRHLNH 467
            GL  L  
Sbjct: 147 NGLSSLEV 154

>2z80_A TOLL-like receptor 2, variable lymphocyte recepto; TLR2, lipopeptide, innate immunity, glycoprotein, immune RES inflammatory response; HET: NAG; 1.80A {Homo sapiens} Length = 353

 Score = 81.3 bits (201), Expect = 5e-17
 Identities = 46/280 (16%), Positives = 84/280 (30%), Gaps = 25/280 (8%)

Query: 106 SNLTSLSFRRNNAITAQGMKAFAGLINLVKLDLERC--TRIHGGLVNLKGLMKLESLNIK 163
             + SL    N  IT          +NL  L L       I         L  LE L++ 
Sbjct: 52  EAVKSLDLSNNR-ITYISNSDLQRCVNLQALVLTSNGINTIEEDS--FSSLGSLEHLDLS 108

Query: 164 WCNCITDSDMKPLSGLTNLKSLQISCSKVTD-SGIAYLKGLQKLTLLNLEGCP-VTAACL 221
           + N +++        L++L  L +  +        +    L KL +L +      T    
Sbjct: 109 Y-NYLSNLSSSWFKPLSSLTFLNLLGNPYKTLGETSLFSHLTKLQILRVGNMDTFTKIQR 167

Query: 222 DSLSALGSLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESL 281
              + L  L  L ++   L     +    I ++  L L   +      + +   +++E L
Sbjct: 168 KDFAGLTFLEELEIDASDLQSYEPKSLKSIQNVSHLILHMKQHILLLEIFVDVTSSVECL 227

Query: 282 NLDSCGIGDEGLVNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISDGSL 341
            L    +       L+                ++ L       N++  + S   +     
Sbjct: 228 ELRDTDLDTFHFSELSTGE-------------TNSLIKKFTFRNVKITDESLFQVMKL-- 272

Query: 342 RKLAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLFG 381
             L  +S L  L     Q+          LT L  + L  
Sbjct: 273 --LNQISGLLELEFSRNQLKSVPDGIFDRLTSLQKIWLHT 310

>2z80_A TOLL-like receptor 2, variable lymphocyte recepto; TLR2, lipopeptide, innate immunity, glycoprotein, immune RES inflammatory response; HET: NAG; 1.80A {Homo sapiens} Length = 353

 Score = 73.2 bits (180), Expect = 2e-14
 Identities = 56/260 (21%), Positives = 105/260 (40%), Gaps = 28/260 (10%)

Query: 206 LTLLNLEGCPVTAACLDSLSALGSLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEIT 265
           +  L+L    +T      L    +L  L L    ++    + FS +GSL+ L+L +N ++
Sbjct: 54  VKSLDLSNNRITYISNSDLQRCVNLQALVLTSNGINTIEEDSFSSLGSLEHLDLSYNYLS 113

Query: 266 DECLVHLKGLTNLESLNLDSCGIGDEGLVNLTGLCNLKCLELSDTQVGSSGLRHLSGLTN 325
           +      K L++L  LNL                   K L  +      S L  L  L  
Sbjct: 114 NLSSSWFKPLSSLTFLNLLGN--------------PYKTLGETSL---FSHLTKLQILRV 156

Query: 326 LESINLSFTGISDGSLRKLAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLFGARIT 385
                 +FT I        AGL+ L+ L +DA  +      +L S+  ++HL L   +  
Sbjct: 157 GN--MDTFTKIQRKDF---AGLTFLEELEIDASDLQSYEPKSLKSIQNVSHLILHMKQHI 211

Query: 386 DSGAAYLRNFKNLRSLEICGGGLTDAGVKHIKDLSSLTLLNLS--QNCNLTDKTL----E 439
                ++    ++  LE+    L       +    + +L+     +N  +TD++L    +
Sbjct: 212 LLLEIFVDVTSSVECLELRDTDLDTFHFSELSTGETNSLIKKFTFRNVKITDESLFQVMK 271

Query: 440 LISGLTGLVSLNVSNSRITS 459
           L++ ++GL+ L  S +++ S
Sbjct: 272 LLNQISGLLELEFSRNQLKS 291

>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A* Length = 768

 Score = 82.3 bits (204), Expect = 8e-17
 Identities = 93/411 (22%), Positives = 150/411 (36%), Gaps = 40/411 (9%)

Query: 57  SSLLSVDLSGSDVTDS--GLIHLKDCSNLQSLDFNFCIQISDGGLEHLRGLSNLTSLSFR 114
           +SL S+DLS + ++     L  L  CS L+ L+ +       G +     L++L  L   
Sbjct: 100 ASLTSLDLSRNSLSGPVTTLTSLGSCSGLKFLNVSSNTLDFPGKVSGGLKLNSLEVLDLS 159

Query: 115 RNNAITAQGMKAFAGLINLVKLDLERCTRIHGGLVNLKGLMKLESLNIKWCNCITDSDMK 174
            N+          +G                 G V   G  +L+ L I     I+     
Sbjct: 160 ANS---------ISG-------------ANVVGWVLSDGCGELKHLAISGNK-ISGD--V 194

Query: 175 PLSGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACLDSLSALGSLFYLN 234
            +S   NL+ L +S +  +   I +L     L  L++ G  ++     ++S    L  LN
Sbjct: 195 DVSRCVNLEFLDVSSNNFSTG-IPFLGDCSALQHLDISGNKLSGDFSRAISTCTELKLLN 253

Query: 235 LNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKG-LTNLESLNLDSCGIGDEGL 293
           ++  Q    G      + SL+ L+L  N+ T E    L G    L  L+L          
Sbjct: 254 ISSNQFV--GPIPPLPLKSLQYLSLAENKFTGEIPDFLSGACDTLTGLDLSGNHFYGAVP 311

Query: 294 VNLTGLCNLKCLELSDTQ-VGSSGLRHLSGLTNLESINLSFTGISDG---SLRKLAGLSS 349
                   L+ L LS     G   +  L  +  L+ ++LSF   S     SL  L   +S
Sbjct: 312 PFFGSCSLLESLALSSNNFSGELPMDTLLKMRGLKVLDLSFNEFSGELPESLTNL--SAS 369

Query: 350 LKSLNLDARQITDTGLAAL--TSLTGLTHLDLFGARITDSGAAYLRNFKNLRSLEICGGG 407
           L +L+L +   +   L  L       L  L L     T      L N   L SL +    
Sbjct: 370 LLTLDLSSNNFSGPILPNLCQNPKNTLQELYLQNNGFTGKIPPTLSNCSELVSLHLSFNY 429

Query: 408 LTDAGVKHIKDLSSLTLLNLSQNCNLTDKTLELISGLTGLVSLNVSNSRIT 458
           L+      +  LS L  L L  N  L  +  + +  +  L +L +  + +T
Sbjct: 430 LSGTIPSSLGSLSKLRDLKLWLN-MLEGEIPQELMYVKTLETLILDFNDLT 479

>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A* Length = 768

 Score = 76.1 bits (188), Expect = 7e-15
 Identities = 59/265 (22%), Positives = 105/265 (39%), Gaps = 17/265 (6%)

Query: 204 QKLTLLNLEGCPVTAAC---LDSLSALGSLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLG 260
            K+T ++L   P+         SL +L  L  L L+   ++      F    SL  L+L 
Sbjct: 50  DKVTSIDLSSKPLNVGFSAVSSSLLSLTGLESLFLSNSHINGS-VSGFKCSASLTSLDLS 108

Query: 261 FNEITDE--CLVHLKGLTNLESLNLDSCGIGDEGLV-NLTGLCNLKCLELSDTQ---VGS 314
            N ++     L  L   + L+ LN+ S  +   G V     L +L+ L+LS         
Sbjct: 109 RNSLSGPVTTLTSLGSCSGLKFLNVSSNTLDFPGKVSGGLKLNSLEVLDLSANSISGANV 168

Query: 315 SGLRHLSGLTNLESINLSFTGISDGSLRKLAGLSSLKSLNLDARQITDTGLAALTSLTGL 374
            G     G   L+ + +S   IS G +  ++   +L+ L++ +   +   +  L   + L
Sbjct: 169 VGWVLSDGCGELKHLAISGNKIS-GDV-DVSRCVNLEFLDVSSNNFSTG-IPFLGDCSAL 225

Query: 375 THLDLFGARITDSGAAYLRNFKNLRSLEICGGGLTDAGVKHIKDLSSLTLLNLSQNCNLT 434
            HLD+ G +++   +  +     L+ L I        G      L SL  L+L++N   T
Sbjct: 226 QHLDISGNKLSGDFSRAISTCTELKLLNISSNQFV--GPIPPLPLKSLQYLSLAEN-KFT 282

Query: 435 DK-TLELISGLTGLVSLNVSNSRIT 458
            +    L      L  L++S +   
Sbjct: 283 GEIPDFLSGACDTLTGLDLSGNHFY 307

>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A* Length = 768

 Score = 75.3 bits (186), Expect = 1e-14
 Identities = 80/414 (19%), Positives = 160/414 (38%), Gaps = 44/414 (10%)

Query: 57  SSLLSVDLSGSDVT-DSGLI--HLKDCSNLQSLDFNFCIQISDGGLEHLRGLSNLTSLSF 113
             + S+DLS   +      +   L   + L+SL  +    I+ G +   +  ++LTSL  
Sbjct: 50  DKVTSIDLSSKPLNVGFSAVSSSLLSLTGLESLFLSNS-HIN-GSVSGFKCSASLTSLDL 107

Query: 114 RRNNAITAQGMKAFAGLINLVKLDLERCTRIHGGLVNLKGLMKLESLNIKWCNCITDSDM 173
            RN+          +G +                L +L     L+ LN+          +
Sbjct: 108 SRNS---------LSGPVT--------------TLTSLGSCSGLKFLNVSSNTLDFPGKV 144

Query: 174 KPLSGLTNLKSLQISCSKVTDS---GIAYLKGLQKLTLLNLEGCPVTAACLDSLSALGSL 230
                L +L+ L +S + ++ +   G     G  +L  L + G  ++      +S   +L
Sbjct: 145 SGGLKLNSLEVLDLSANSISGANVVGWVLSDGCGELKHLAISGNKISGD--VDVSRCVNL 202

Query: 231 FYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNLDSCGIGD 290
            +L+++    S           +L+ L++  N+++ +    +   T L+ LN+ S     
Sbjct: 203 EFLDVSSNNFSTGIPF-LGDCSALQHLDISGNKLSGDFSRAISTCTELKLLNISSNQF-- 259

Query: 291 EGLVNLTGLCNLKCLELSDTQ-VGSSGLRHLSGLTNLESINLSFTGISDGSL-RKLAGLS 348
            G +    L +L+ L L++ +  G            L  ++LS      G++       S
Sbjct: 260 VGPIPPLPLKSLQYLSLAENKFTGEIPDFLSGACDTLTGLDLSGNHFY-GAVPPFFGSCS 318

Query: 349 SLKSLNLDARQITDT-GLAALTSLTGLTHLDLFGARITDSGAAYLRNFK-NLRSLEICGG 406
            L+SL L +   +    +  L  + GL  LDL     +      L N   +L +L++   
Sbjct: 319 LLESLALSSNNFSGELPMDTLLKMRGLKVLDLSFNEFSGELPESLTNLSASLLTLDLSSN 378

Query: 407 GLTDAGVKHI--KDLSSLTLLNLSQNCNLTDKTLELISGLTGLVSLNVSNSRIT 458
             +   + ++     ++L  L L  N   T K    +S  + LVSL++S + ++
Sbjct: 379 NFSGPILPNLCQNPKNTLQELYLQNN-GFTGKIPPTLSNCSELVSLHLSFNYLS 431

>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A* Length = 768

 Score = 65.7 bits (161), Expect = 1e-11
 Identities = 79/426 (18%), Positives = 143/426 (33%), Gaps = 64/426 (15%)

Query: 52  IASQGSSLLSVDLSGSDVTDSGLI--HLKDCSNLQSLDFNFCIQISDGGL--EHLRGLSN 107
           ++    +L  +DLSG+     G +      CS L+SL  +     S G L  + L  +  
Sbjct: 289 LSGACDTLTGLDLSGNHF--YGAVPPFFGSCSLLESLALSSN-NFS-GELPMDTLLKMRG 344

Query: 108 LTSLSFRRNNAITAQGMKAFAGLI---------NLVKLDLERCTRIHGGL---VNLKGLM 155
           L  L    N          F+G +         +L+ LDL       G +   +      
Sbjct: 345 LKVLDLSFNE---------FSGELPESLTNLSASLLTLDLSSN-NFSGPILPNLCQNPKN 394

Query: 156 KLESLNIKWCNCITDSDMKPLSGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCP 215
            L+ L ++  N  T      LS  + L SL +S + ++ +  + L  L KL  L L    
Sbjct: 395 TLQELYLQN-NGFTGKIPPTLSNCSELVSLHLSFNYLSGTIPSSLGSLSKLRDLKLWLNM 453

Query: 216 VTAACLDSLSALGSLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGL 275
           +       L  + +L  L L+   L+ +     S   +L  ++L  N +T E    +  L
Sbjct: 454 LEGEIPQELMYVKTLETLILDFNDLTGEIPSGLSNCTNLNWISLSNNRLTGEIPKWIGRL 513

Query: 276 TNLESLNLDSCGIGDEGLVNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSFTG 335
            NL  L L +         + +G        +            L    +L  ++L+   
Sbjct: 514 ENLAILKLSNN--------SFSG-------NIPAE---------LGDCRSLIWLDLNTNL 549

Query: 336 ISDGSL-RKLAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLFGARITDSGA--AYL 392
            + G++   +   S   + N     I       + +          G  +   G     L
Sbjct: 550 FN-GTIPAAMFKQSGKIAAN----FIAGKRYVYIKNDGMKKECHGAGNLLEFQGIRSEQL 604

Query: 393 RNFKNLRSLEICGGGLTDAGVKHIKDLSSLTLLNLSQNCNLTDKTLELISGLTGLVSLNV 452
                     I              +  S+  L++S N  L+    + I  +  L  LN+
Sbjct: 605 NRLSTRNPCNITSRVYGGHTSPTFDNNGSMMFLDMSYN-MLSGYIPKEIGSMPYLFILNL 663

Query: 453 SNSRIT 458
            ++ I+
Sbjct: 664 GHNDIS 669

>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A* Length = 768

 Score = 42.2 bits (100), Expect = 3e-04
 Identities = 57/291 (19%), Positives = 102/291 (35%), Gaps = 51/291 (17%)

Query: 54  SQGSSLLSVDLSGSDVTDSGLI--HLKDCSNLQSLDFNFCIQISDGGLEHLRGLSNLTSL 111
               +L ++ L  +D+T  G I   L +C+NL  +  +   +++    + +  L NL  L
Sbjct: 463 MYVKTLETLILDFNDLT--GEIPSGLSNCTNLNWISLSNN-RLTGEIPKWIGRLENLAIL 519

Query: 112 SFRRNN---AITAQGMKAFAGLINLVKLDLERCTRIHG----GLVNLKGLMKLESLNIKW 164
               N+    I A+         +L+ LDL      +G     +    G +         
Sbjct: 520 KLSNNSFSGNIPAE----LGDCRSLIWLDLNT-NLFNGTIPAAMFKQSGKIAA------- 567

Query: 165 CNCITDSDMKPLSGLTNLKSLQISCSKVTDSGI--AYLKGLQKLTLLNLEGCPVTAACLD 222
            N I       +      K    + + +   GI    L  L      N+           
Sbjct: 568 -NFIAGKRYVYIKNDGMKKECHGAGNLLEFQGIRSEQLNRLSTRNPCNITSRVYGGHTSP 626

Query: 223 SLSALGSLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLN 282
           +    GS+ +L+++   LS    ++   +  L +LNLG N+I+      +  L  L  L+
Sbjct: 627 TFDNNGSMMFLDMSYNMLSGYIPKEIGSMPYLFILNLGHNDISGSIPDEVGDLRGLNILD 686

Query: 283 LDSCGIGDEGLVNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSF 333
           L S          L G            ++  +    +S LT L  I+LS 
Sbjct: 687 L-SSN-------KLDG------------RIPQA----MSALTMLTEIDLSN 713

>2ft3_A Biglycan; proteoglycan, dimer interface, structural protein, signaling; HET: NAG FLC; 3.40A {Bos taurus} Length = 332

 Score = 80.1 bits (198), Expect = 9e-17
 Identities = 62/290 (21%), Positives = 102/290 (35%), Gaps = 29/290 (10%)

Query: 81  SNLQSLDFNFCIQISDGGLEHLRGLSNLTSLSFRRNNAITAQGMKAFAGLINLVKLDLE- 139
            +   LD      IS+   +  +GL +L +L    NN I+    KAF+ L  L KL +  
Sbjct: 54  PDTTLLDLQNN-DISELRKDDFKGLQHLYALVLV-NNKISKIHEKAFSPLRKLQKLYISK 111

Query: 140 -RCTRIHGGLVNLKGLMKLESLNIKWCNCITDSDMKPLSGLTNLKSLQISCSKVTDSGIA 198
                I   L        L  L I   N I        SGL N+  +++  + + +SG  
Sbjct: 112 NHLVEIPPNL-----PSSLVELRIHD-NRIRKVPKGVFSGLRNMNCIEMGGNPLENSGFE 165

Query: 199 Y--LKGLQKLTLLNLEGCPVTAACLDSLSALGSLFYLNLNRCQLSDDGCEKFSKIGSLKV 256
                GL KL  L +    +T    D    L  L +L+ N+ Q  +       +   L  
Sbjct: 166 PGAFDGL-KLNYLRISEAKLTGIPKDLPETLNEL-HLDHNKIQAIELED--LLRYSKLYR 221

Query: 257 LNLGFNEITDECLVHLKGLTNLESLNLDSCGIGD--EGLVNLTGLCNLKCLELSDTQVGS 314
           L LG N+I       L  L  L  L+LD+  +     GL +L     L+ + L    +  
Sbjct: 222 LGLGHNQIRMIENGSLSFLPTLRELHLDNNKLSRVPAGLPDLK---LLQVVYLHTNNITK 278

Query: 315 ------SGLRHLSGLTNLESINLSFTGISDGSLRKLA--GLSSLKSLNLD 356
                   +           I+L    +    ++      ++   ++   
Sbjct: 279 VGVNDFCPVGFGVKRAYYNGISLFNNPVPYWEVQPATFRCVTDRLAIQFG 328

>2ft3_A Biglycan; proteoglycan, dimer interface, structural protein, signaling; HET: NAG FLC; 3.40A {Bos taurus} Length = 332

 Score = 75.8 bits (187), Expect = 3e-15
 Identities = 50/266 (18%), Positives = 89/266 (33%), Gaps = 17/266 (6%)

Query: 200 LKGLQKLTLLNLEGCPVTAACLDSLSALGSLFYLNLNRCQLSDDGCEKFSKIGSLKVLNL 259
            KGLQ L  L L    ++     + S L  L  L +++  L +      S   SL  L +
Sbjct: 74  FKGLQHLYALVLVNNKISKIHEKAFSPLRKLQKLYISKNHLVEIPPNLPS---SLVELRI 130

Query: 260 GFNEITDECLVHLKGLTNLESLNLDSCGIGDEGLVNLT-GLCNLKCLELSDTQVGSSGLR 318
             N I         GL N+  + +    + + G          L  L +S+ ++      
Sbjct: 131 HDNRIRKVPKGVFSGLRNMNCIEMGGNPLENSGFEPGAFDGLKLNYLRISEAKLTGIPKD 190

Query: 319 HLSGLTNLESINLSFTGISDGSLRKLAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLD 378
               L  L   +     I    L      S L  L L   QI      +L+ L  L  L 
Sbjct: 191 LPETLNELHLDHNKIQAIELEDLL---RYSKLYRLGLGHNQIRMIENGSLSFLPTLRELH 247

Query: 379 LFGARITDSGAAYLRNFKNLRSLEICGGGLTD------AGVKHIKDLSSLTLLNLSQNCN 432
           L   +++    A L + K L+ + +    +T         V      +    ++L  N  
Sbjct: 248 LDNNKLS-RVPAGLPDLKLLQVVYLHTNNITKVGVNDFCPVGFGVKRAYYNGISLFNN-P 305

Query: 433 LTDKTLE--LISGLTGLVSLNVSNSR 456
           +    ++      +T  +++   N +
Sbjct: 306 VPYWEVQPATFRCVTDRLAIQFGNYK 331

>2ft3_A Biglycan; proteoglycan, dimer interface, structural protein, signaling; HET: NAG FLC; 3.40A {Bos taurus} Length = 332

 Score = 71.2 bits (175), Expect = 1e-13
 Identities = 48/254 (18%), Positives = 86/254 (33%), Gaps = 31/254 (12%)

Query: 206 LTLLNLEGCPVTAACLDSLSALGSLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEIT 265
            TLL+L+   ++    D    L  L+ L L   ++S    + FS +  L+ L +  N + 
Sbjct: 56  TTLLDLQNNDISELRKDDFKGLQHLYALVLVNNKISKIHEKAFSPLRKLQKLYISKNHLV 115

Query: 266 DECLVHLKGLTNLESLNLDSCGIGDEGLVNLTGLCNLKCLELSDTQVGSSGLRHLSGLTN 325
           +   +     ++L  L +    I        +GL N+ C+E+                  
Sbjct: 116 E---IPPNLPSSLVELRIHDNRIRKVPKGVFSGLRNMNCIEMGGNP-------------- 158

Query: 326 LESINLSFTGISDGSLRKLAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLFGARIT 385
                L  +G   G+   L     L  L +   ++T        +L     L L   +I 
Sbjct: 159 -----LENSGFEPGAFDGL----KLNYLRISEAKLTGIPKDLPETLN---ELHLDHNKIQ 206

Query: 386 DSGAAYLRNFKNLRSLEICGGGLTDAGVKHIKDLSSLTLLNLSQNCNLTDKTLELISGLT 445
                 L  +  L  L +    +       +  L +L  L+L  N  L+     L   L 
Sbjct: 207 AIELEDLLRYSKLYRLGLGHNQIRMIENGSLSFLPTLRELHLDNN-KLSRVPAGL-PDLK 264

Query: 446 GLVSLNVSNSRITS 459
            L  + +  + IT 
Sbjct: 265 LLQVVYLHTNNITK 278

>2ft3_A Biglycan; proteoglycan, dimer interface, structural protein, signaling; HET: NAG FLC; 3.40A {Bos taurus} Length = 332

 Score = 48.1 bits (115), Expect = 3e-06
 Identities = 26/140 (18%), Positives = 48/140 (34%), Gaps = 11/140 (7%)

Query: 324 TNLESINLSFTGISDGSLRKLAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLFGAR 383
            +   ++L    IS+       GL  L +L L   +I+     A + L  L  L +    
Sbjct: 54  PDTTLLDLQNNDISELRKDDFKGLQHLYALVLVNNKISKIHEKAFSPLRKLQKLYISKNH 113

Query: 384 ITD--SGAAYLRNFKNLRSLEICGGGLTDAGVKHIKDLSSLTLLNLSQNCNLTDKTLE-- 439
           + +            +L  L I    +          L ++  + +  N  L +   E  
Sbjct: 114 LVEIPPNL-----PSSLVELRIHDNRIRKVPKGVFSGLRNMNCIEMGGNP-LENSGFEPG 167

Query: 440 LISGLTGLVSLNVSNSRITS 459
              GL  L  L +S +++T 
Sbjct: 168 AFDGLK-LNYLRISEAKLTG 186

>2z7x_B TOLL-like receptor 1, variable lymphocyte recepto; TLR2, TLR1, lipopeptide, innate immunity, glycoPro immune response, inflammatory response, leucine-rich repeat membrane, receptor; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens} Length = 520

 Score = 80.7 bits (199), Expect = 2e-16
 Identities = 66/404 (16%), Positives = 132/404 (32%), Gaps = 24/404 (5%)

Query: 81  SNLQSLDFNFCIQISDGGLEHLRGLSNLTSLSFRRNNAITAQGMKAFAGLINLVKLDLER 140
                L+ +    IS+     +  LS L  L    +N I    +  F     L  LDL  
Sbjct: 21  QKTTILNISQN-YISELWTSDILSLSKLRILII-SHNRIQYLDISVFKFNQELEYLDLSH 78

Query: 141 CTRIHGGLVNLKGLMKLESLNIKWCNCITDSDMKPLSGLTNLKSLQISCSKVTDSGIAYL 200
             ++    ++    + L+ L++ +         K    ++ LK L +S + +  S +  +
Sbjct: 79  -NKLVK--ISCHPTVNLKHLDLSFNAFDALPICKEFGNMSQLKFLGLSTTHLEKSSVLPI 135

Query: 201 KGLQKLTL-LNLEGCPVTAACLDSLSALG--SLFYLNLNRCQLSDDGCEKFSKIGSLKVL 257
             L    + L L          + L      SL  +     +           + +L++ 
Sbjct: 136 AHLNISKVLLVLGETYGEKEDPEGLQDFNTESLHIVFPTNKEFHFILDVSVKTVANLELS 195

Query: 258 NLGFNEITDECLVHLKGLTNLE------SLNLDSCGIGDEGLV---NLTGLCNLKCLELS 308
           N+      ++C   L  L  L+      +L L++        +    L     +    +S
Sbjct: 196 NIKCVLEDNKCSYFLSILAKLQTNPKLSNLTLNNIETTWNSFIRILQLVWHTTVWYFSIS 255

Query: 309 DTQVGSSGLRHLSGLTNLESINLSFTGISDGSLRKLA-----GLSSLKSLNLDARQITDT 363
           + ++           +      LS   +                S++   N         
Sbjct: 256 NVKLQGQLDFRDFDYSGTSLKALSIHQVVSDVFGFPQSYIYEIFSNMNIKNFTVSGTRMV 315

Query: 364 GLAALTSLTGLTHLDLFGARITDSGAAYLRNFKNLRSLEICGGGLT--DAGVKHIKDLSS 421
            +   + ++   HLD     +TD+      +   L +L +    L       +    + S
Sbjct: 316 HMLCPSKISPFLHLDFSNNLLTDTVFENCGHLTELETLILQMNQLKELSKIAEMTTQMKS 375

Query: 422 LTLLNLSQNCNLTDKTLELISGLTGLVSLNVSNSRITSAGLRHL 465
           L  L++SQN    D+     S    L+SLN+S++ +T    R L
Sbjct: 376 LQQLDISQNSVSYDEKKGDCSWTKSLLSLNMSSNILTDTIFRCL 419

>2z7x_B TOLL-like receptor 1, variable lymphocyte recepto; TLR2, TLR1, lipopeptide, innate immunity, glycoPro immune response, inflammatory response, leucine-rich repeat membrane, receptor; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens} Length = 520

 Score = 71.0 bits (174), Expect = 2e-13
 Identities = 54/368 (14%), Positives = 122/368 (33%), Gaps = 28/368 (7%)

Query: 57  SSLLSVDLSGSDVTDSGLIHLKDCSNLQSLDFNFCIQISDGGLEHLRGLSNLT-SLSFRR 115
           S L  + LS + +  S ++ +   +  + L             E L+  +  +  + F  
Sbjct: 115 SQLKFLGLSTTHLEKSSVLPIAHLNISKVLLVLGETYGEKEDPEGLQDFNTESLHIVFPT 174

Query: 116 NNAITAQGMKAFAGLINLVKLDLERCTRIHGGLVNLKGLMKLESLNIKWCNCITDSDMKP 175
           N         +   + NL   +++     +     L  L KL++        + + +   
Sbjct: 175 NKEFHFILDVSVKTVANLELSNIKCVLEDNKCSYFLSILAKLQTNPKLSNLTLNNIETTW 234

Query: 176 LSGLT-------------NLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACLD 222
            S +              ++ ++++               L+ L++  +           
Sbjct: 235 NSFIRILQLVWHTTVWYFSISNVKLQGQLDFRDFDYSGTSLKALSIHQVVSDVFGFPQSY 294

Query: 223 SLSALGSLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLN 282
                 ++   N              SKI     L+   N +TD    +   LT LE+L 
Sbjct: 295 IYEIFSNMNIKNFTVSGTRMVHMLCPSKISPFLHLDFSNNLLTDTVFENCGHLTELETLI 354

Query: 283 LDSCGIGDEGLVNLTG----LCNLKCLELSDTQVGSSGLR-HLSGLTNLESINLSFTGIS 337
           L    +  + L  +      + +L+ L++S   V     +   S   +L S+N+S   ++
Sbjct: 355 LQMNQL--KELSKIAEMTTQMKSLQQLDISQNSVSYDEKKGDCSWTKSLLSLNMSSNILT 412

Query: 338 DGSLRKLAGLSSLKSLNLDARQIT--DTGLAALTSLTGLTHLDLFGARITDSGAAYLRNF 395
           D   R L     +K L+L + +I      +  L +L     L++   ++           
Sbjct: 413 DTIFRCL--PPRIKVLDLHSNKIKSIPKQVVKLEALQ---ELNVASNQLKSVPDGIFDRL 467

Query: 396 KNLRSLEI 403
            +L+ + +
Sbjct: 468 TSLQKIWL 475

>2z7x_B TOLL-like receptor 1, variable lymphocyte recepto; TLR2, TLR1, lipopeptide, innate immunity, glycoPro immune response, inflammatory response, leucine-rich repeat membrane, receptor; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens} Length = 520

 Score = 68.0 bits (166), Expect = 2e-12
 Identities = 47/312 (15%), Positives = 104/312 (33%), Gaps = 16/312 (5%)

Query: 81  SNLQSLDFNFCIQISDGGLEHLRGLSNLTSLSFRRNNAITAQGMKAFAGLINLVKLDLER 140
               + +F+F + +S   + +L  LSN+  +      +     +        L  L L  
Sbjct: 171 VFPTNKEFHFILDVSVKTVANLE-LSNIKCVLEDNKCSYFLSILAKLQTNPKLSNLTLNN 229

Query: 141 CT---RIHGGLVNLKGLMKLESLNIKWCNCITDSDMKPLSG----LTNLKSLQISCSKVT 193
                     ++ L     +   +I         D +        L  L   Q+      
Sbjct: 230 IETTWNSFIRILQLVWHTTVWYFSISNVKLQGQLDFRDFDYSGTSLKALSIHQVVSDVFG 289

Query: 194 DSGIAYLKGLQKLTLLNLEGCPVTAACLDSLSALGSLFYLNLNRCQLSDDGCEKFSKIGS 253
                  +    + + N          +   S +    +L+ +   L+D   E    +  
Sbjct: 290 FPQSYIYEIFSNMNIKNFTVSGTRMVHMLCPSKISPFLHLDFSNNLLTDTVFENCGHLTE 349

Query: 254 LKVLNLGFNEIT--DECLVHLKGLTNLESLNLDSCGIG-DEGLVNLTGLCNLKCLELSDT 310
           L+ L L  N++    +       + +L+ L++    +  DE   + +   +L  L +S  
Sbjct: 350 LETLILQMNQLKELSKIAEMTTQMKSLQQLDISQNSVSYDEKKGDCSWTKSLLSLNMSSN 409

Query: 311 QVGSSGLRHLSGLTNLESINLSFTGISDGSL-RKLAGLSSLKSLNLDARQITDTGLAALT 369
            +  +  R L     ++ ++L    I   S+ +++  L +L+ LN+ + Q+         
Sbjct: 410 ILTDTIFRCL--PPRIKVLDLHSNKIK--SIPKQVVKLEALQELNVASNQLKSVPDGIFD 465

Query: 370 SLTGLTHLDLFG 381
            LT L  + L  
Sbjct: 466 RLTSLQKIWLHT 477

>2z7x_B TOLL-like receptor 1, variable lymphocyte recepto; TLR2, TLR1, lipopeptide, innate immunity, glycoPro immune response, inflammatory response, leucine-rich repeat membrane, receptor; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens} Length = 520

 Score = 60.6 bits (147), Expect = 4e-10
 Identities = 63/399 (15%), Positives = 131/399 (32%), Gaps = 36/399 (9%)

Query: 81  SNLQSLD--FNFCIQISDGGLEHLRGLSNLTSLSFRRNNAITAQGMKAFAGLINL-VKLD 137
            NL+ LD  FN    +          +S L  L     + +    +   A L    V L 
Sbjct: 90  VNLKHLDLSFNAFDALPICKE--FGNMSQLKFLGLSTTH-LEKSSVLPIAHLNISKVLLV 146

Query: 138 LERCTRIHGGLVNLKGLMKLE-SLNIKWCNCITDSDMKPLSGLTNLKSLQISCSKVTD-- 194
           L            L+        +               +  + NL+   I C    +  
Sbjct: 147 LGETYGEKEDPEGLQDFNTESLHIVFPTNKEFHFILDVSVKTVANLELSNIKCVLEDNKC 206

Query: 195 ----SGIAYLKGLQKLTLLNLEGCPVTAACLDSLSAL---GSLFYLNLNRCQLSDDGCEK 247
               S +A L+   KL+ L L     T      +  L    +++Y +++  +L      +
Sbjct: 207 SYFLSILAKLQTNPKLSNLTLNNIETTWNSFIRILQLVWHTTVWYFSISNVKLQGQLDFR 266

Query: 248 -----FSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNLDSCGIGDEGLVNLTGLCNL 302
                 + + +L +  +  +          +  +N+   N    G     ++  + +   
Sbjct: 267 DFDYSGTSLKALSIHQVVSDVFGFPQSYIYEIFSNMNIKNFTVSGTRMVHMLCPSKISPF 326

Query: 303 KCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISDGSLRKLAG----LSSLKSLNLDAR 358
             L+ S+  +  +   +   LT LE++ L    +    L K+A     + SL+ L++   
Sbjct: 327 LHLDFSNNLLTDTVFENCGHLTELETLILQMNQLK--ELSKIAEMTTQMKSLQQLDISQN 384

Query: 359 QITDTGLA-ALTSLTGLTHLDLFGARITDSGAAYLRNFKNLRSLEICGGGLT--DAGVKH 415
            ++        +    L  L++    +TD+    L     ++ L++    +      V  
Sbjct: 385 SVSYDEKKGDCSWTKSLLSLNMSSNILTDTIFRCL--PPRIKVLDLHSNKIKSIPKQVVK 442

Query: 416 IKDLSSLTLLNLSQNCNLTDKTLELISGLTGLVSLNVSN 454
              L +L  LN++ N  L      +   LT L  + +  
Sbjct: 443 ---LEALQELNVASN-QLKSVPDGIFDRLTSLQKIWLHT 477

>2z7x_B TOLL-like receptor 1, variable lymphocyte recepto; TLR2, TLR1, lipopeptide, innate immunity, glycoPro immune response, inflammatory response, leucine-rich repeat membrane, receptor; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens} Length = 520

 Score = 44.5 bits (105), Expect = 6e-05
 Identities = 35/165 (21%), Positives = 61/165 (36%), Gaps = 14/165 (8%)

Query: 104 GLSNLTSLSFRRNNAITAQGMKAFAGLINLVKLDLERC--TRIHGGLVNLKGLMKLESLN 161
            +S    L F  NN +T    +    L  L  L L+      +         +  L+ L+
Sbjct: 322 KISPFLHLDFS-NNLLTDTVFENCGHLTELETLILQMNQLKELSKIAEMTTQMKSLQQLD 380

Query: 162 IKWCNCITDSDMKPLSGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACL 221
           I   +   D      S   +L SL +S + +TD    +     ++ +L+L         +
Sbjct: 381 ISQNSVSYDEKKGDCSWTKSLLSLNMSSNILTD--TIFRCLPPRIKVLDLHSNK-----I 433

Query: 222 DSLSA----LGSLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFN 262
            S+      L +L  LN+   QL       F ++ SL+ + L  N
Sbjct: 434 KSIPKQVVKLEALQELNVASNQLKSVPDGIFDRLTSLQKIWLHTN 478

>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697} Length = 636

 Score = 79.7 bits (197), Expect = 4e-16
 Identities = 61/422 (14%), Positives = 140/422 (33%), Gaps = 49/422 (11%)

Query: 77  LKDCSNLQSLDFNFCIQISDGGLEHLRGLSNLTSLSFRRNNAITAQGMKAFAGLINLVKL 136
           +   + L+              +       N       +   +       +  L +L  +
Sbjct: 202 VMRLTKLRQFYMGNS-PFVAENICEAWENENSEYAQQYKTEDLK------WDNLKDLTDV 254

Query: 137 DLERC---TRIHGGLVNLKGLMKLESLNIKWCNCITDSDMKPLSG--------LTNLKSL 185
           ++  C   T++   L  L    +++ +N+  CN     +                 ++ +
Sbjct: 255 EVYNCPNLTKLPTFLKALP---EMQLINV-ACNRGISGEQLKDDWQALADAPVGEKIQII 310

Query: 186 QISCSKVTDSGI-AYLKGLQKLTLLNLEGCPVTAACLDSLSALGSLFYLNLNRCQLSDDG 244
            I  + +    +   L+ ++KL +L      +    L +  +   L  LNL   Q+++  
Sbjct: 311 YIGYNNLKTFPVETSLQKMKKLGMLECLYNQLEG-KLPAFGSEIKLASLNLAYNQITEIP 369

Query: 245 CEKFSKIGSLKVLNLGFNEITD-ECLVHLKGLTNLESLNLDSC---GIGDEGLVNLT--- 297
                    ++ L+   N++     +   K ++ + +++        +  +    L    
Sbjct: 370 ANFCGFTEQVENLSFAHNKLKYIPNIFDAKSVSVMSAIDFSYNEIGSVDGKNFDPLDPTP 429

Query: 298 -GLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLS---FTGISDGSLRK----LAGLSS 349
               N+  + LS+ Q+        S  + L SINL     T I   SL+           
Sbjct: 430 FKGINVSSINLSNNQISKFPKELFSTGSPLSSINLMGNMLTEIPKNSLKDENENFKNTYL 489

Query: 350 LKSLNLDARQITDTGLA-ALTSLTGLTHLDLFGARITD-----SGAAYLRNFKNLRSLEI 403
           L S++L   ++T        T+L  L  +DL     +        ++ L+ F      + 
Sbjct: 490 LTSIDLRFNKLTKLSDDFRATTLPYLVGIDLSYNSFSKFPTQPLNSSTLKGFGIRNQRDA 549

Query: 404 CGGGLTDAGVKHIKDLSSLTLLNLSQNCNLTDKTLELISGLTGLVSLNVSNSRITSAGLR 463
            G        + I    SLT L +  N ++     ++      +  L++ ++   S  L 
Sbjct: 550 QGNRTLREWPEGITLCPSLTQLQIGSN-DIRKVNEKI---TPNISVLDIKDNPNISIDLS 605

Query: 464 HL 465
           ++
Sbjct: 606 YV 607

>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697} Length = 636

 Score = 78.2 bits (193), Expect = 1e-15
 Identities = 53/408 (12%), Positives = 128/408 (31%), Gaps = 34/408 (8%)

Query: 75  IHLKDCSNLQSLD---FNFCIQISDGGLEHLRGLSNLTSLSFRRNNAITAQGMKAFAGLI 131
           + L     +  L    F    ++ D     +  L+ L  L+   +     + +    G+ 
Sbjct: 75  VSLNSNGRVTGLSLEGFGASGRVPD----AIGQLTELEVLALGSHGEKVNERLFGPKGIS 130

Query: 132 NLVKLDLERCTRIHGGLVNLKGLMKLESLNIKWC--NCITDSDMKPLSGLTNLKSLQISC 189
             +  + ++  R+H     +    + +  ++     N          S    LK  QI  
Sbjct: 131 ANMSDEQKQKMRMHYQKTFVDYDPREDFSDLIKDCINSDPQQKSIKKSSRITLKDTQIGQ 190

Query: 190 SKVTDSGI-AYLKGLQKLTLLNLEGCPVTAACLDSLSALGSLFYLNLNRCQLSDDGCEKF 248
                + +   +  L KL    +   P  A  +       +  Y    + +        +
Sbjct: 191 LSNNITFVSKAVMRLTKLRQFYMGNSPFVAENICEAWENENSEYAQQYKTEDLK-----W 245

Query: 249 SKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNLDSCGI--------GDEGLVNLTGLC 300
             +  L  + +       +    LK L  ++ +N+               + L +     
Sbjct: 246 DNLKDLTDVEVYNCPNLTKLPTFLKALPEMQLINVACNRGISGEQLKDDWQALADAPVGE 305

Query: 301 NLKCLELSDTQVGSSGL-RHLSGLTNLESINLSFTGISDGSLRKLAGLSSLKSLNLDARQ 359
            ++ + +    + +  +   L  +  L  +   +  +  G L        L SLNL   Q
Sbjct: 306 KIQIIYIGYNNLKTFPVETSLQKMKKLGMLECLYNQLE-GKLPAFGSEIKLASLNLAYNQ 364

Query: 360 ITDTGLAALTSLTGLTHLDLFGARITD-SGAAYLRNFKNLRSLEICGGGLTDAGVKH--- 415
           IT+           + +L     ++         ++   + +++     +     K+   
Sbjct: 365 ITEIPANFCGFTEQVENLSFAHNKLKYIPNIFDAKSVSVMSAIDFSYNEIGSVDGKNFDP 424

Query: 416 ----IKDLSSLTLLNLSQNCNLTDKTLELISGLTGLVSLNVSNSRITS 459
                    +++ +NLS N  ++    EL S  + L S+N+  + +T 
Sbjct: 425 LDPTPFKGINVSSINLSNN-QISKFPKELFSTGSPLSSINLMGNMLTE 471

>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697} Length = 636

 Score = 70.5 bits (173), Expect = 4e-13
 Identities = 59/381 (15%), Positives = 116/381 (30%), Gaps = 55/381 (14%)

Query: 77  LKDCSNLQSLDFNFC-------IQISDGGLEHLRGLSNLTSLSFRRNNAITAQGMKAFAG 129
           LK    +Q ++           ++     L        +  +    NN  T     +   
Sbjct: 269 LKALPEMQLINVACNRGISGEQLKDDWQALADAPVGEKIQIIYIGYNNLKTFPVETSLQK 328

Query: 130 LINLVKLDLERCTRIHGGLVNLKGLMKLESLNIKWCNCITDSDMKPLSGLTNLKSLQISC 189
           +  L  L+     ++ G L      +KL SLN+   N IT+           +++L  + 
Sbjct: 329 MKKLGMLECLYN-QLEGKLPAFGSEIKLASLNL-AYNQITEIPANFCGFTEQVENLSFAH 386

Query: 190 SKVTD-SGIAYLKGLQKLTLLNLEGCPVT-------AACLDSLSALGSLFYLNLNRCQLS 241
           +K+     I   K +  ++ ++     +             +     ++  +NL+  Q+S
Sbjct: 387 NKLKYIPNIFDAKSVSVMSAIDFSYNEIGSVDGKNFDPLDPTPFKGINVSSINLSNNQIS 446

Query: 242 DDGCEKFSKIGSLKVLNLGFNEITD-------ECLVHLKGLTNLESLNLDSCGIGDEGLV 294
               E FS    L  +NL  N +T+       +   + K    L S++L           
Sbjct: 447 KFPKELFSTGSPLSSINLMGNMLTEIPKNSLKDENENFKNTYLLTSIDLRFN-------- 498

Query: 295 NLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLS---FTGISD--GSLRKLAGLSS 349
            LT L +    +              + L  L  I+LS   F+       +   L G   
Sbjct: 499 KLTKLSD----DFR-----------ATTLPYLVGIDLSYNSFSKFPTQPLNSSTLKGFGI 543

Query: 350 LKSLNLDARQITDTGLAALTSLTGLTHLDLFGARITDSGAAYLRNFKNLRSLEICGGGLT 409
               +    +        +T    LT L +    I            N+  L+I      
Sbjct: 544 RNQRDAQGNRTLREWPEGITLCPSLTQLQIGSNDIRKVNEK---ITPNISVLDIKDNPNI 600

Query: 410 DAGVKHIKDLSSLTLLNLSQN 430
              + ++       +  L  +
Sbjct: 601 SIDLSYVCPYIEAGMYMLFYD 621

>2ra8_A Uncharacterized protein Q64V53_bacfr; WGR domain, LRR domain, leucine rich repeats, BFR43, structural genomics, PSI-2; 1.95A {Bacteroides fragilis} Length = 362

 Score = 76.9 bits (188), Expect = 1e-15
 Identities = 40/179 (22%), Positives = 74/179 (41%), Gaps = 23/179 (12%)

Query: 151 LKGLMKLESLNIKWCNCITDSDMKPLSGLTNLKSLQISCSKVTDSGI-----AYLKGLQK 205
           L  +  L +L IK  N ++           NLKSL+I    + DS +     + L  L+K
Sbjct: 168 LDAMPLLNNLKIKGTNNLSIGKKP----RPNLKSLEIISGGLPDSVVEDILGSDLPNLEK 223

Query: 206 LTL---LNLEGCPVTAACLDSL---SALGSLFYLNLNRCQLSDDGCEKFSK---IGSLKV 256
           L L   +   G          L       +L +L +   +  +   E F +   +  L+ 
Sbjct: 224 LVLYVGVEDYGFDGDMNVFRPLFSKDRFPNLKWLGIVDAEEQNVVVEMFLESDILPQLET 283

Query: 257 LNLGFNEITDE----CLVHLKGLTNLESLNLDSCGIGDEGLVNLTGLCNLKCLELSDTQ 311
           +++    +TDE     L H+  + +L+ +N+    + DE    L     +K +++SD+Q
Sbjct: 284 MDISAGVLTDEGARLLLDHVDKIKHLKFINMKYNYLSDEMKKELQKSLPMK-IDVSDSQ 341

>2ra8_A Uncharacterized protein Q64V53_bacfr; WGR domain, LRR domain, leucine rich repeats, BFR43, structural genomics, PSI-2; 1.95A {Bacteroides fragilis} Length = 362

 Score = 64.6 bits (156), Expect = 2e-11
 Identities = 26/138 (18%), Positives = 53/138 (38%), Gaps = 18/138 (13%)

Query: 275 LTNLESLNLDSCGIGDEGLVNLTG--LCNLKCLEL---SDTQVGSSGLRHLSGL------ 323
             NL+SL + S G+ D  + ++ G  L NL+ L L    +       +     L      
Sbjct: 192 RPNLKSLEIISGGLPDSVVEDILGSDLPNLEKLVLYVGVEDYGFDGDMNVFRPLFSKDRF 251

Query: 324 TNLESINLSFTGISDGSLRKLAG---LSSLKSLNLDARQITDTGLAAL----TSLTGLTH 376
            NL+ + +      +  +        L  L+++++ A  +TD G   L      +  L  
Sbjct: 252 PNLKWLGIVDAEEQNVVVEMFLESDILPQLETMDISAGVLTDEGARLLLDHVDKIKHLKF 311

Query: 377 LDLFGARITDSGAAYLRN 394
           +++    ++D     L+ 
Sbjct: 312 INMKYNYLSDEMKKELQK 329

>2ra8_A Uncharacterized protein Q64V53_bacfr; WGR domain, LRR domain, leucine rich repeats, BFR43, structural genomics, PSI-2; 1.95A {Bacteroides fragilis} Length = 362

 Score = 64.2 bits (155), Expect = 2e-11
 Identities = 35/190 (18%), Positives = 61/190 (32%), Gaps = 29/190 (15%)

Query: 272 LKGLTNLESLNLDSCGIGDEGLVNLTGLCNLKCLELSDTQVGSSGLRHL--SGLTNLESI 329
           L  +  L +L +        G        NLK LE+    +  S +  +  S L NLE +
Sbjct: 168 LDAMPLLNNLKIKGTNNLSIGKK---PRPNLKSLEIISGGLPDSVVEDILGSDLPNLEKL 224

Query: 330 NLSFTGISDGSLRKLAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLFGARITDSGA 389
            L       G    +     L                +      L  L +  A   +   
Sbjct: 225 VLYVGVEDYGFDGDMNVFRPL---------------FSKDRFPNLKWLGIVDAEEQNVVV 269

Query: 390 AYL---RNFKNLRSLEICGGGLTDAGVKHI----KDLSSLTLLNLSQNCNLTDKTLE-LI 441
                      L +++I  G LTD G + +      +  L  +N+  N  L+D+  + L 
Sbjct: 270 EMFLESDILPQLETMDISAGVLTDEGARLLLDHVDKIKHLKFINMKYN-YLSDEMKKELQ 328

Query: 442 SGLTGLVSLN 451
             L   + ++
Sbjct: 329 KSLPMKIDVS 338

>1ozn_A Reticulon 4 receptor; NOGO receptor, MAD, myelination inhibition, OMGP, MAG, NOGO- signal transduction, neuronal regeneration, ligand binding; HET: NDG MAN NAG BMA; 1.52A {Homo sapiens} SCOP: c.10.2.7 PDB: 1p8t_A* 3kj4_A* Length = 285

 Score = 72.7 bits (179), Expect = 2e-14
 Identities = 50/229 (21%), Positives = 77/229 (33%), Gaps = 29/229 (12%)

Query: 106 SNLTSLSFRRNNAITAQGMKAFAGLINLVKLDLERC--TRIHGGLVNLKGLMKLESLNIK 163
           +    +    N  I+     +F    NL  L L      RI        GL  LE L+  
Sbjct: 32  AASQRIFLHGNR-ISHVPAASFRACRNLTILWLHSNVLARIDAAA--FTGLALLEQLD-- 86

Query: 164 WCNCITDSDMKPLSGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACLDS 223
                       LS    L+S+  +             GL +L  L+L+ C +       
Sbjct: 87  ------------LSDNAQLRSVDPAT----------FHGLGRLHTLHLDRCGLQELGPGL 124

Query: 224 LSALGSLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNL 283
              L +L YL L    L     + F  +G+L  L L  N I+       +GL +L+ L L
Sbjct: 125 FRGLAALQYLYLQDNALQALPDDTFRDLGNLTHLFLHGNRISSVPERAFRGLHSLDRLLL 184

Query: 284 DSCGIGDEGLVNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLS 332
               +          L  L  L L    + +     L+ L  L+ + L+
Sbjct: 185 HQNRVAHVHPHAFRDLGRLMTLYLFANNLSALPTEALAPLRALQYLRLN 233

>1ozn_A Reticulon 4 receptor; NOGO receptor, MAD, myelination inhibition, OMGP, MAG, NOGO- signal transduction, neuronal regeneration, ligand binding; HET: NDG MAN NAG BMA; 1.52A {Homo sapiens} SCOP: c.10.2.7 PDB: 1p8t_A* 3kj4_A* Length = 285

 Score = 70.8 bits (174), Expect = 8e-14
 Identities = 43/207 (20%), Positives = 73/207 (35%), Gaps = 24/207 (11%)

Query: 253 SLKVLNLGFNEITDECLVHLKGLTNLESLNLDSCGIGDEGLVNLTGLCNLKCLELSDTQV 312
           + + + L  N I+       +   NL  L L S  +        TGL  L+ L+LSD   
Sbjct: 33  ASQRIFLHGNRISHVPAASFRACRNLTILWLHSNVLARIDAAAFTGLALLEQLDLSD--- 89

Query: 313 GSSGLRHLSGLTNLESINLSFTGISDGSLRKLAGLSSLKSLNLDARQITDTGLAALTSLT 372
                            N     +   +     GL  L +L+LD   + + G      L 
Sbjct: 90  -----------------NAQLRSVDPATFH---GLGRLHTLHLDRCGLQELGPGLFRGLA 129

Query: 373 GLTHLDLFGARITDSGAAYLRNFKNLRSLEICGGGLTDAGVKHIKDLSSLTLLNLSQNCN 432
            L +L L    +        R+  NL  L + G  ++    +  + L SL  L L QN  
Sbjct: 130 ALQYLYLQDNALQALPDDTFRDLGNLTHLFLHGNRISSVPERAFRGLHSLDRLLLHQN-R 188

Query: 433 LTDKTLELISGLTGLVSLNVSNSRITS 459
           +          L  L++L +  + +++
Sbjct: 189 VAHVHPHAFRDLGRLMTLYLFANNLSA 215

>1ozn_A Reticulon 4 receptor; NOGO receptor, MAD, myelination inhibition, OMGP, MAG, NOGO- signal transduction, neuronal regeneration, ligand binding; HET: NDG MAN NAG BMA; 1.52A {Homo sapiens} SCOP: c.10.2.7 PDB: 1p8t_A* 3kj4_A* Length = 285

 Score = 70.8 bits (174), Expect = 8e-14
 Identities = 44/207 (21%), Positives = 72/207 (34%), Gaps = 9/207 (4%)

Query: 229 SLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNLDSCGI 288
           +   + L+  ++S      F    +L +L L  N +         GL  LE L+L     
Sbjct: 33  ASQRIFLHGNRISHVPAASFRACRNLTILWLHSNVLARIDAAAFTGLALLEQLDLSD--- 89

Query: 289 GDEGLVNL-----TGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISDGSLRK 343
            +  L ++      GL  L  L L    +   G     GL  L+ + L    +       
Sbjct: 90  -NAQLRSVDPATFHGLGRLHTLHLDRCGLQELGPGLFRGLAALQYLYLQDNALQALPDDT 148

Query: 344 LAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLFGARITDSGAAYLRNFKNLRSLEI 403
              L +L  L L   +I+     A   L  L  L L   R+        R+   L +L +
Sbjct: 149 FRDLGNLTHLFLHGNRISSVPERAFRGLHSLDRLLLHQNRVAHVHPHAFRDLGRLMTLYL 208

Query: 404 CGGGLTDAGVKHIKDLSSLTLLNLSQN 430
               L+    + +  L +L  L L+ N
Sbjct: 209 FANNLSALPTEALAPLRALQYLRLNDN 235

>1ozn_A Reticulon 4 receptor; NOGO receptor, MAD, myelination inhibition, OMGP, MAG, NOGO- signal transduction, neuronal regeneration, ligand binding; HET: NDG MAN NAG BMA; 1.52A {Homo sapiens} SCOP: c.10.2.7 PDB: 1p8t_A* 3kj4_A* Length = 285

 Score = 68.5 bits (168), Expect = 4e-13
 Identities = 48/208 (23%), Positives = 79/208 (37%), Gaps = 6/208 (2%)

Query: 57  SSLLSVDLSGSDVTDSGLIHLKDCSNLQSLDFNFCIQISDGGLEHLRGLSNLTSLSFRRN 116
           ++   + L G+ ++       + C NL  L  +    ++        GL+ L  L    N
Sbjct: 32  AASQRIFLHGNRISHVPAASFRACRNLTILWLHSN-VLARIDAAAFTGLALLEQLDLSDN 90

Query: 117 NAITAQGMKAFAGLINLVKLDLERC--TRIHGGLVNLKGLMKLESLNIKWCNCITDSDMK 174
             + +     F GL  L  L L+RC    +  GL   +GL  L+ L ++  N +      
Sbjct: 91  AQLRSVDPATFHGLGRLHTLHLDRCGLQELGPGL--FRGLAALQYLYLQD-NALQALPDD 147

Query: 175 PLSGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACLDSLSALGSLFYLN 234
               L NL  L +  ++++       +GL  L  L L    V      +   LG L  L 
Sbjct: 148 TFRDLGNLTHLFLHGNRISSVPERAFRGLHSLDRLLLHQNRVAHVHPHAFRDLGRLMTLY 207

Query: 235 LNRCQLSDDGCEKFSKIGSLKVLNLGFN 262
           L    LS    E  + + +L+ L L  N
Sbjct: 208 LFANNLSALPTEALAPLRALQYLRLNDN 235

>1ozn_A Reticulon 4 receptor; NOGO receptor, MAD, myelination inhibition, OMGP, MAG, NOGO- signal transduction, neuronal regeneration, ligand binding; HET: NDG MAN NAG BMA; 1.52A {Homo sapiens} SCOP: c.10.2.7 PDB: 1p8t_A* 3kj4_A* Length = 285

 Score = 62.3 bits (152), Expect = 5e-11
 Identities = 34/175 (19%), Positives = 56/175 (32%), Gaps = 8/175 (4%)

Query: 300 CNLKCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISDGSLRKLAGLSSLKSLNLDA-R 358
              + + L   ++            NL  + L    ++        GL+ L+ L+L    
Sbjct: 32  AASQRIFLHGNRISHVPAASFRACRNLTILWLHSNVLARIDAAAFTGLALLEQLDLSDNA 91

Query: 359 QITDTGLAALTSLTGLTHLDLFGARITDSGAAYLRNFKNLRSLEICGGGLTDAGVKHIKD 418
           Q+     A    L  L  L L    + + G    R    L+ L +    L        +D
Sbjct: 92  QLRSVDPATFHGLGRLHTLHLDRCGLQELGPGLFRGLAALQYLYLQDNALQALPDDTFRD 151

Query: 419 LSSLTLLNLSQNCNLTDKTLELISGLTGLVSLNVSNSRITS------AGLRHLNH 467
           L +LT L L  N  ++        GL  L  L +  +R+          L  L  
Sbjct: 152 LGNLTHLFLHGN-RISSVPERAFRGLHSLDRLLLHQNRVAHVHPHAFRDLGRLMT 205

>1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A Length = 454

 Score = 69.3 bits (170), Expect = 7e-13
 Identities = 80/476 (16%), Positives = 156/476 (32%), Gaps = 89/476 (18%)

Query: 3   PRDISQQIFNELV-YSRCLTEVSLEAFRDCALQDLCLGQYPGVNDKWMDVIASQGSSLLS 61
           PR++S     E + +S  LTE+ +EA    +  +                  +      +
Sbjct: 5   PRNVSNTFLQEPLRHSSNLTEMPVEAENVKSKTEYYN---------------AWSEWERN 49

Query: 62  VDLSGSDVTDSGLIHLKDC--SNLQSLDFNFCIQISDGGLEHL-RGLSNLTSLSFRRNNA 118
                 +  +  +  L+DC       L+      +++ GL  L     +L SL    N+ 
Sbjct: 50  APPGNGEQREMAVSRLRDCLDRQAHELE------LNNLGLSSLPELPPHLESLVASCNSL 103

Query: 119 ITAQGMKAFAGLINLVKLDLERCTRIHGGLVNLKGLM-KLESLNIKWCNCITDSDMKPLS 177
                 +    L +L+  +          L  L  L   LE L +   N +       L 
Sbjct: 104 TELP--ELPQSLKSLLVDNNN--------LKALSDLPPLLEYLGVS-NNQLEKLP--ELQ 150

Query: 178 GLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACLDSLSALGSLFYLNLNR 237
             + LK + +  + +             L  +      +    L  L  L  L  +  + 
Sbjct: 151 NSSFLKIIDVDNNSLKK----LPDLPPSLEFIAAGNNQLEE--LPELQNLPFLTAIYADN 204

Query: 238 CQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNLDSCGIGDEGLVNLT 297
             L     +      SL+ +  G N + +  L  L+ L  L ++  D+  +  + L +L 
Sbjct: 205 NSLK----KLPDLPLSLESIVAGNNILEE--LPELQNLPFLTTIYADNNLL--KTLPDL- 255

Query: 298 GLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISD--GSLRKL----------- 344
              +L+ L + D  + +        LT L+     F+G+S+   +L  L           
Sbjct: 256 -PPSLEALNVRDNYL-TDLPELPQSLTFLDVSENIFSGLSELPPNLYYLNASSNEIRSLC 313

Query: 345 AGLSSLKSLNLDARQITDTGLAAL-TSLTGLTHLDLFGARITDSGAAYLRNFKNLRSLEI 403
               SL+ LN+   ++ +     L      L  L      + +         +NL+ L +
Sbjct: 314 DLPPSLEELNVSNNKLIE-----LPALPPRLERLIASFNHLAEVPE----LPQNLKQLHV 364

Query: 404 CGGGLTDAGVKHIKDLSSLTLLNLSQNCNLTDKTLELISGLTGLVSLNVSNSRITS 459
               L         D+   ++ +L  N +L     E+      L  L+V  + +  
Sbjct: 365 EYNPLR-----EFPDIPE-SVEDLRMNSHLA----EVPELPQNLKQLHVETNPLRE 410

>1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A Length = 454

 Score = 53.5 bits (129), Expect = 7e-08
 Identities = 52/351 (14%), Positives = 117/351 (33%), Gaps = 62/351 (17%)

Query: 57  SSLLSVDLSGSDVTDSGLIHLKDCSNLQSLDFNFCIQISDGGLEHL-RGLSNLTSLSFRR 115
             L  + +S + +    L  L++ S L+ +D      + +  L+ L     +L  ++   
Sbjct: 131 PLLEYLGVSNNQLEK--LPELQNSSFLKIID------VDNNSLKKLPDLPPSLEFIAAG- 181

Query: 116 NNAITAQGMKAFAGLINLVKLDLERC--TRIHGGLVNLK----------------GLMKL 157
           NN +    +     L  L  +  +     ++    ++L+                 L  L
Sbjct: 182 NNQLEE--LPELQNLPFLTAIYADNNSLKKLPDLPLSLESIVAGNNILEELPELQNLPFL 239

Query: 158 ESLNIKWCNCITDSDMKPLSGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVT 217
            ++     N +            +L++L +  + +T       + L  L +       ++
Sbjct: 240 TTIYAD-NNLLKTLP----DLPPSLEALNVRDNYLT-DLPELPQSLTFLDVSENIFSGLS 293

Query: 218 AACLDSLSALGSLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHL-KGLT 276
                      +L+YLN +  ++            SL+ LN+  N++       L     
Sbjct: 294 -------ELPPNLYYLNASSNEIR----SLCDLPPSLEELNVSNNKLI-----ELPALPP 337

Query: 277 NLESLNLDSCGIGD--EGLVNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESI----- 329
            LE L      + +  E   NL  L +++   L +       +  L   ++L  +     
Sbjct: 338 RLERLIASFNHLAEVPELPQNLKQL-HVEYNPLREFPDIPESVEDLRMNSHLAEVPELPQ 396

Query: 330 NLSFTGISDGSLRKL-AGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDL 379
           NL    +    LR+      S++ L +++ ++ D    A  +   L     
Sbjct: 397 NLKQLHVETNPLREFPDIPESVEDLRMNSERVVDPYEFAHETTDKLEDDVF 447

>4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV} Length = 328

 Score = 66.9 bits (164), Expect = 2e-12
 Identities = 56/351 (15%), Positives = 104/351 (29%), Gaps = 69/351 (19%)

Query: 130 LINLVKLDLERCTRIHGGLVNLKGLMKLESLNIKWCNCITDSDMKPLSGLTNLKSLQISC 189
                 L  +  T +      L    +  + +    +          +   N +    + 
Sbjct: 11  SSGRENLYFQGSTALRPYHDVLSQWQRHYNADRNRWHSAWR-----QANSNNPQIETRTG 65

Query: 190 SKVTD--SGIAYLKGLQKLTLLNLEGCPVTAACLDSLSALGSLFYLNLNRCQLSDDGCEK 247
             +      +           L L   P+     D    L  L ++ ++   L +   + 
Sbjct: 66  RALKATADLLEDAT-QPGRVALELRSVPLPQ-FPDQAFRLSHLQHMTIDAAGLMEL-PDT 122

Query: 248 FSKIGSLKVLNLGFNEIT---DECLVHLKGLTNLESLNLDSC--------GIGD-EGLVN 295
             +   L+ L L  N +          +  L  L  L++ +C         +   +    
Sbjct: 123 MQQFAGLETLTLARNPLRALPAS----IASLNRLRELSIRACPELTELPEPLASTDASGE 178

Query: 296 LTGLCNLKCLELSDTQVGSSGLRHL----SGLTNLESINLSFTGISDGSL-RKLAGLSSL 350
             GL NL+ L L  T      +R L    + L NL+S+ +  + +S  +L   +  L  L
Sbjct: 179 HQGLVNLQSLRLEWTG-----IRSLPASIANLQNLKSLKIRNSPLS--ALGPAIHHLPKL 231

Query: 351 KSLNLDARQITDTGLAALTSLTGLTHLDLFGARITDSGAAYLRNFKNLRSL--EICGGGL 408
           + L+L                  L  L L             ++  NL +L  +I     
Sbjct: 232 EELDLRGCTALRNYPPIFGGRAPLKRLIL-------------KDCSNLLTLPLDIH---- 274

Query: 409 TDAGVKHIKDLSSLTLLNLSQNCNLTDKTL-ELISGLTGLVSLNVSNSRIT 458
                     L+ L  L+L    NL+   L  LI+ L     + V      
Sbjct: 275 ---------RLTQLEKLDLRGCVNLS--RLPSLIAQLPANCIILVPPHLQA 314

>4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV} Length = 328

 Score = 44.9 bits (107), Expect = 3e-05
 Identities = 32/207 (15%), Positives = 59/207 (28%), Gaps = 34/207 (16%)

Query: 271 HLKGLTNLESLNLDSCGIGDEGLVNL-TGLCNLKCLELSDTQVGSSGLRHLSGLTNLESI 329
           H    +  E+L           L      L   +    +D           +   N +  
Sbjct: 7   HHHHSSGRENLYFQGS----TALRPYHDVLSQWQRHYNADRN-RWHSAWRQANSNNPQIE 61

Query: 330 NLSFTGISD--GSLRKLAGLSSLKSLNLDARQITDTGL-AALTSLTGLTHLDLFGARIT- 385
             +   +      L          +L L +  +           L+ L H+ +  A +  
Sbjct: 62  TRTGRALKATADLLEDAT-QPGRVALELRSVPLPQ--FPDQAFRLSHLQHMTIDAAGLME 118

Query: 386 --DSGAAYLRNFKNLRSLEICGGGLT---DAGVKHIKDLSSLTLLNLSQNCNLTD----- 435
             D+    ++ F  L +L +    L     +    I  L+ L  L++     LT+     
Sbjct: 119 LPDT----MQQFAGLETLTLARNPLRALPAS----IASLNRLRELSIRACPELTELPEPL 170

Query: 436 ---KTLELISGLTGLVSLNVSNSRITS 459
                     GL  L SL +  + I S
Sbjct: 171 ASTDASGEHQGLVNLQSLRLEWTGIRS 197

>4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV} Length = 328

 Score = 44.6 bits (106), Expect = 4e-05
 Identities = 37/253 (14%), Positives = 70/253 (27%), Gaps = 45/253 (17%)

Query: 218 AACLDSLSALGSLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTN 277
            +             L            +  S+       +                  N
Sbjct: 2   GSSHHHHHHSSGRENLYFQGSTALRPYHDVLSQWQRHYNADRNRWHS----AWRQANSNN 57

Query: 278 LESLNLDSCGIGD--EGLVNLTGLCNLKCLELSDTQVGSSGLRHL----SGLTNLESINL 331
            +        +    + L + T       LEL         L         L++L+ + +
Sbjct: 58  PQIETRTGRALKATADLLEDAT-QPGRVALELRSVP-----LPQFPDQAFRLSHLQHMTI 111

Query: 332 SFTGISDGSL-RKLAGLSSLKSLNLDARQITDTGL-AALTSLTGLTHLDLFGARITDSGA 389
              G+    L   +   + L++L L    +    L A++ SL  L  L            
Sbjct: 112 DAAGLM--ELPDTMQQFAGLETLTLARNPLRA--LPASIASLNRLRELS----------- 156

Query: 390 AYLRNFKNLRSL--EICGGGLTDAGVKHIKDLSSLTLLNLSQNCNLTDKTL-ELISGLTG 446
             +R    L  L   +     +       + L +L  L L     +   +L   I+ L  
Sbjct: 157 --IRACPELTELPEPLASTDASGE----HQGLVNLQSLRLEWT-GIR--SLPASIANLQN 207

Query: 447 LVSLNVSNSRITS 459
           L SL + NS +++
Sbjct: 208 LKSLKIRNSPLSA 220

>4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV} Length = 328

 Score = 44.2 bits (105), Expect = 5e-05
 Identities = 49/222 (22%), Positives = 81/222 (36%), Gaps = 46/222 (20%)

Query: 77  LKDCSNLQSLDFNFCIQISDGGLEHL----RGLSNLTSLSFRRNN--AITAQGMKAFAGL 130
               S+LQ +  +        GL  L    +  + L +L+  RN   A+ A    + A L
Sbjct: 100 AFRLSHLQHMTIDAA------GLMELPDTMQQFAGLETLTLARNPLRALPA----SIASL 149

Query: 131 INLVKLDLERCTRIHGGLVNLKGLMKLESLNIKWCNCITDSDMKPLSGLTNLKSLQISCS 190
             L +L +  C              +L  L     +           GL NL+SL++  +
Sbjct: 150 NRLRELSIRACP-------------ELTELPEPLAST---DASGEHQGLVNLQSLRLEWT 193

Query: 191 KVTD--SGIAYLKGLQKLTLLNLEGCPVTAACLDSLSALGSLFYLNLNRCQLSDDGCEKF 248
            +    + IA L+    L  L +   P++ A   ++  L  L  L+L  C    +    F
Sbjct: 194 GIRSLPASIANLQ---NLKSLKIRNSPLS-ALGPAIHHLPKLEELDLRGCTALRNYPPIF 249

Query: 249 SKIGSLKVLNL-GFNEIT---DECLVHLKGLTNLESLNLDSC 286
                LK L L   + +     +    +  LT LE L+L  C
Sbjct: 250 GGRAPLKRLILKDCSNLLTLPLD----IHRLTQLEKLDLRGC 287

>2z62_A TOLL-like receptor 4, variable lymphocyte recepto; TLR, VLR hybrid, MD-2, LPS, glycoprotein response, inflammatory response, innate immunity; HET: NAG FUL BMA; 1.70A {Homo sapiens} PDB: 2z65_A* 3ul8_A* 3ula_A* 3ul7_A* Length = 276

 Score = 64.2 bits (157), Expect = 1e-11
 Identities = 48/212 (22%), Positives = 76/212 (35%), Gaps = 17/212 (8%)

Query: 253 SLKVLNLGFNEITDECLVHLKGLTNLESLNLDSCGIGDEGLVNLTGLCNLKCLELSDTQV 312
           S K L+L FN +             L+ L+L  C I          L +L  L L+   +
Sbjct: 29  STKNLDLSFNPLRHLGSYSFFSFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNPI 88

Query: 313 GSSGLRHLSGLTNLESINLSFTGISDGSLRKLAGLSSLKSLNLDARQITDTGLA-ALTSL 371
            S  L   SGL++L+ +    T ++      +  L +LK LN+    I    L    ++L
Sbjct: 89  QSLALGAFSGLSSLQKLVAVETNLASLENFPIGHLKTLKELNVAHNLIQSFKLPEYFSNL 148

Query: 372 TGLTHLDLFGARITD--SGAAYLRNFKNLRSLEICGGGLTDAGVKHIKDLS-------SL 422
           T L HLDL   +I             + L  + +    L D  +  +  +         L
Sbjct: 149 TNLEHLDLSSNKIQSIYCTD-----LRVLHQMPLLNLSL-DLSLNPMNFIQPGAFKEIRL 202

Query: 423 TLLNLSQNCNLTDKTLELISGLTGLVSLNVSN 454
             L L  N  L      +   LT L  + +  
Sbjct: 203 KELALDTN-QLKSVPDGIFDRLTSLQKIWLHT 233

>2z62_A TOLL-like receptor 4, variable lymphocyte recepto; TLR, VLR hybrid, MD-2, LPS, glycoprotein response, inflammatory response, innate immunity; HET: NAG FUL BMA; 1.70A {Homo sapiens} PDB: 2z65_A* 3ul8_A* 3ula_A* 3ul7_A* Length = 276

 Score = 61.1 bits (149), Expect = 1e-10
 Identities = 41/190 (21%), Positives = 67/190 (35%), Gaps = 16/190 (8%)

Query: 202 GLQKLTLLNLEGCPVTAACLDSLSALGSLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGF 261
              +L +L+L  C +      +  +L  L  L L    +       FS + SL+ L    
Sbjct: 50  SFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNPIQSLALGAFSGLSSLQKLVAVE 109

Query: 262 NEITDECLVHLKGLTNLESLNLDS---CGIGDEGLVNLTGLCNLKCLELSDTQVGSSGLR 318
             +       +  L  L+ LN+                + L NL+ L+LS  ++ S    
Sbjct: 110 TNLASLENFPIGHLKTLKELNVAHNLIQSFKLPEY--FSNLTNLEHLDLSSNKIQSIYCT 167

Query: 319 HLSGLTNLESINLS-------FTGISDGSLRKLAGLSSLKSLNLDARQITDTGLAALTSL 371
            L  L  +  +NLS          I  G+ +++     LK L LD  Q+          L
Sbjct: 168 DLRVLHQMPLLNLSLDLSLNPMNFIQPGAFKEI----RLKELALDTNQLKSVPDGIFDRL 223

Query: 372 TGLTHLDLFG 381
           T L  + L  
Sbjct: 224 TSLQKIWLHT 233

>2z62_A TOLL-like receptor 4, variable lymphocyte recepto; TLR, VLR hybrid, MD-2, LPS, glycoprotein response, inflammatory response, innate immunity; HET: NAG FUL BMA; 1.70A {Homo sapiens} PDB: 2z65_A* 3ul8_A* 3ula_A* 3ul7_A* Length = 276

 Score = 52.7 bits (127), Expect = 7e-08
 Identities = 45/207 (21%), Positives = 72/207 (34%), Gaps = 15/207 (7%)

Query: 86  LDFNFCIQISDGGLEHLRGLSNLTSLSFRRNNAITAQGMKAFAGLINLVKLDLE--RCTR 143
           L FN    +   G         L  L   R   I      A+  L +L  L L       
Sbjct: 35  LSFN---PLRHLGSYSFFSFPELQVLDLSRCE-IQTIEDGAYQSLSHLSTLILTGNPIQS 90

Query: 144 IHGGLVNLKGLMKLESLNIKWCNCITDSDMKPLSGLTNLKSLQISCSKVTDSGIA-YLKG 202
           +  G     GL  L+ L     N +   +  P+  L  LK L ++ + +    +  Y   
Sbjct: 91  LALGA--FSGLSSLQKLVAVETN-LASLENFPIGHLKTLKELNVAHNLIQSFKLPEYFSN 147

Query: 203 LQKLTLLNLEGCPVT---AACLDSLSALGSLFY-LNLNRCQLSDDGCEKFSKIGSLKVLN 258
           L  L  L+L    +       L  L  +  L   L+L+   ++      F +I  LK L 
Sbjct: 148 LTNLEHLDLSSNKIQSIYCTDLRVLHQMPLLNLSLDLSLNPMNFIQPGAFKEI-RLKELA 206

Query: 259 LGFNEITDECLVHLKGLTNLESLNLDS 285
           L  N++          LT+L+ + L +
Sbjct: 207 LDTNQLKSVPDGIFDRLTSLQKIWLHT 233

>2z62_A TOLL-like receptor 4, variable lymphocyte recepto; TLR, VLR hybrid, MD-2, LPS, glycoprotein response, inflammatory response, innate immunity; HET: NAG FUL BMA; 1.70A {Homo sapiens} PDB: 2z65_A* 3ul8_A* 3ula_A* 3ul7_A* Length = 276

 Score = 44.2 bits (105), Expect = 4e-05
 Identities = 33/168 (19%), Positives = 61/168 (36%), Gaps = 14/168 (8%)

Query: 301 NLKCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISDGSLRKLAGLSSLKSLNLDARQI 360
           + K L+LS   +   G         L+ ++LS   I          LS L +L L    I
Sbjct: 29  STKNLDLSFNPLRHLGSYSFFSFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNPI 88

Query: 361 TDTGLAALTSLTGLTHLDLFGARIT--DSGAAYLRNFKNLRSLEICGGGLT---DAGVKH 415
               L A + L+ L  L      +   ++      + K L+ L +    +          
Sbjct: 89  QSLALGAFSGLSSLQKLVAVETNLASLENFPI--GHLKTLKELNVAHNLIQSFKLPEY-- 144

Query: 416 IKDLSSLTLLNLSQNCNLTDKTLELISGLTGL----VSLNVSNSRITS 459
             +L++L  L+LS N  +       +  L  +    +SL++S + +  
Sbjct: 145 FSNLTNLEHLDLSSN-KIQSIYCTDLRVLHQMPLLNLSLDLSLNPMNF 191

>2z62_A TOLL-like receptor 4, variable lymphocyte recepto; TLR, VLR hybrid, MD-2, LPS, glycoprotein response, inflammatory response, innate immunity; HET: NAG FUL BMA; 1.70A {Homo sapiens} PDB: 2z65_A* 3ul8_A* 3ula_A* 3ul7_A* Length = 276

 Score = 42.7 bits (101), Expect = 1e-04
 Identities = 29/112 (25%), Positives = 43/112 (38%), Gaps = 1/112 (0%)

Query: 348 SSLKSLNLDARQITDTGLAALTSLTGLTHLDLFGARITDSGAAYLRNFKNLRSLEICGGG 407
            S K+L+L    +   G  +  S   L  LDL    I        ++  +L +L + G  
Sbjct: 28  FSTKNLDLSFNPLRHLGSYSFFSFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNP 87

Query: 408 LTDAGVKHIKDLSSLTLLNLSQNCNLTDKTLELISGLTGLVSLNVSNSRITS 459
           +    +     LSSL  L      NL       I  L  L  LNV+++ I S
Sbjct: 88  IQSLALGAFSGLSSLQKLVAV-ETNLASLENFPIGHLKTLKELNVAHNLIQS 138

>3a79_B TLR6, VLRB.59, TOLL-like receptor 6, variable lymphocyte recepto; diacyl lipopeptide, innate immunity, Leu repeat, cell membrane, cytoplasmic vesicle; HET: PXS NAG BMA NDG; 2.90A {Mus musculus} Length = 562

 Score = 64.5 bits (157), Expect = 3e-11
 Identities = 69/398 (17%), Positives = 134/398 (33%), Gaps = 26/398 (6%)

Query: 81  SNLQSLDFNFCIQISDGGLEHLRGLSNLTSLSFRRNNAITAQGMKAFAGLINLVKLDLER 140
              ++L  +    IS+  +  +  LS L  L    N  I +     F    +L  LD+  
Sbjct: 52  PRTKALSLSQN-SISELRMPDISFLSELRVLRLSHNR-IRSLDFHVFLFNQDLEYLDVS- 108

Query: 141 CTRIHGGLVNL--KGLMKLESLNIKWCNCITDSDMKPLSGLTNLKSLQISCSKVTDSGIA 198
               H  L N+    +  L  L++ + +       K    LT L  L +S +K     + 
Sbjct: 109 ----HNRLQNISCCPMASLRHLDLSFNDFDVLPVCKEFGNLTKLTFLGLSAAKFRQLDLL 164

Query: 199 YLKGLQKLTL-LNLEGCPVTAACLDSLSALGSLF-YLNLNRCQL-SDDGCEKFSKIGSLK 255
            +  L    + L+L    +     +SL    +   +L  +   L S       + +G L+
Sbjct: 165 PVAHLHLSCILLDLVSYHIKGGETESLQIPNTTVLHLVFHPNSLFSVQVNMSVNALGHLQ 224

Query: 256 VLNLGFNEITDECL----VHLKGLTNLESLNLDSCGIGDEGLVNLTGLCNLKCLE---LS 308
           + N+  N+   + L      L     L ++ L       +  V L      + +E   + 
Sbjct: 225 LSNIKLNDENCQRLMTFLSELTRGPTLLNVTLQHIETTWKCSVKLFQFFWPRPVEYLNIY 284

Query: 309 DTQVGSSGLRHLSGLTNLESINLSFTGISDGSLRKLA-----GLSSLKSLNLDARQITDT 363
           +  +     R     +     +L    + +              + +    L        
Sbjct: 285 NLTITERIDREEFTYSETALKSLMIEHVKNQVFLFSKEALYSVFAEMNIKMLSISDTPFI 344

Query: 364 GLAALTSLTGLTHLDLFGARITDSGAAYLRNFKNLRSLEICGGGLT--DAGVKHIKDLSS 421
            +    S +  T L+      TDS        K L++L +   GL          K++SS
Sbjct: 345 HMVCPPSPSSFTFLNFTQNVFTDSVFQGCSTLKRLQTLILQRNGLKNFFKVALMTKNMSS 404

Query: 422 LTLLNLSQNCNLTDKTLELISGLTGLVSLNVSNSRITS 459
           L  L++S N   +       +    ++ LN+S++ +T 
Sbjct: 405 LETLDVSLNSLNSHAYDRTCAWAESILVLNLSSNMLTG 442

>3a79_B TLR6, VLRB.59, TOLL-like receptor 6, variable lymphocyte recepto; diacyl lipopeptide, innate immunity, Leu repeat, cell membrane, cytoplasmic vesicle; HET: PXS NAG BMA NDG; 2.90A {Mus musculus} Length = 562

 Score = 62.6 bits (152), Expect = 1e-10
 Identities = 54/367 (14%), Positives = 116/367 (31%), Gaps = 22/367 (5%)

Query: 81  SNLQSLDFNFCIQISDGGLEHLRGLSNLTSLSFRRNNAITAQGMKAFAGLINLVKLDLER 140
           + L  L      +     L  +  L     L    +  I     ++   + N   L L  
Sbjct: 146 TKLTFLGL-SAAKFRQLDLLPVAHLHLSCILLDLVSYHIKGGETESLQ-IPNTTVLHLVF 203

Query: 141 CTRIHGGLVNLKGLMKLESLNIKWCNCITDSDMKPLSGLT------NLKSLQISCSKVTD 194
                  +     +  L  L +       ++  + ++ L+       L ++ +   + T 
Sbjct: 204 HPNSLFSVQVNMSVNALGHLQLSNIKLNDENCQRLMTFLSELTRGPTLLNVTLQHIETTW 263

Query: 195 SGI------AYLKGLQKLTLLN--LEGCPVTAACLDSLSALGSLFYLNLNRCQLSDDGCE 246
                     + + ++ L + N  +           S +AL SL   ++           
Sbjct: 264 KCSVKLFQFFWPRPVEYLNIYNLTITERIDREEFTYSETALKSLMIEHVKNQVFLFSKEA 323

Query: 247 KFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNLDSCGIGDEGLVNLTGLCNLKCLE 306
            +S    + +  L  ++     +V     ++   LN       D      + L  L+ L 
Sbjct: 324 LYSVFAEMNIKMLSISDTPFIHMVCPPSPSSFTFLNFTQNVFTDSVFQGCSTLKRLQTLI 383

Query: 307 LSDTQVGS--SGLRHLSGLTNLESINLSFTGISDGSLRKL-AGLSSLKSLNLDARQITDT 363
           L    + +          +++LE++++S   ++  +  +  A   S+  LNL +  +T +
Sbjct: 384 LQRNGLKNFFKVALMTKNMSSLETLDVSLNSLNSHAYDRTCAWAESILVLNLSSNMLTGS 443

Query: 364 GLAALTSLTGLTHLDLFGARITDSGAAYLRNFKNLRSLEICGGGLTDAGVKHIKDLSSLT 423
               L     +  LDL   RI           + L+ L +    L          L+SL 
Sbjct: 444 VFRCLPPK--VKVLDLHNNRIMSIPKDVTH-LQALQELNVASNQLKSVPDGVFDRLTSLQ 500

Query: 424 LLNLSQN 430
            + L  N
Sbjct: 501 YIWLHDN 507

>1a9n_A U2A', U2A'; complex (nuclear protein/RNA), RNA, snRNP, ribonucleoprotein, RNA binding protein/RNA complex; 2.38A {Homo sapiens} SCOP: c.10.2.4 Length = 176

 Score = 60.8 bits (148), Expect = 3e-11
 Identities = 25/128 (19%), Positives = 41/128 (32%), Gaps = 8/128 (6%)

Query: 256 VLNLGFNEITDECLVHLKGLTNLESLNLDSCGIGD-EGLVNLTGLCNLKCLELSDTQVGS 314
           ++ L    I                L+L    I   E L     L     ++ SD ++  
Sbjct: 1   MVKLTAELIEQ--AAQYTNAVRDRELDLRGYKIPVIENLGAT--LDQFDAIDFSDNEIRK 56

Query: 315 SGLRHLSGLTNLESINLSFTGISDGSLRKLAGLSSLKSLNLDARQITD-TGLAALTSLTG 373
             L     L  L+++ ++   I          L  L  L L    + +   L  L SL  
Sbjct: 57  --LDGFPLLRRLKTLLVNNNRICRIGEGLDQALPDLTELILTNNSLVELGDLDPLASLKS 114

Query: 374 LTHLDLFG 381
           LT+L +  
Sbjct: 115 LTYLCILR 122

>1a9n_A U2A', U2A'; complex (nuclear protein/RNA), RNA, snRNP, ribonucleoprotein, RNA binding protein/RNA complex; 2.38A {Homo sapiens} SCOP: c.10.2.4 Length = 176

 Score = 48.5 bits (116), Expect = 6e-07
 Identities = 23/119 (19%), Positives = 39/119 (32%), Gaps = 6/119 (5%)

Query: 100 EHLRGLSNLTSLSFRRNNAITAQGMKAFAGLINLVKLDLERCTRIHGGLVNLKGLMKLES 159
                      L  R       + + A   L     +D      I   L     L +L++
Sbjct: 13  AQYTNAVRDRELDLRGYKIPVIENLGA--TLDQFDAIDFSDN-EIRK-LDGFPLLRRLKT 68

Query: 160 LNIKWCNCITDSDMKPLSGLTNLKSLQISCSKVTD-SGIAYLKGLQKLTLLNLEGCPVT 217
           L +   N I          L +L  L ++ + + +   +  L  L+ LT L +   PVT
Sbjct: 69  LLVN-NNRICRIGEGLDQALPDLTELILTNNSLVELGDLDPLASLKSLTYLCILRNPVT 126

>1a9n_A U2A', U2A'; complex (nuclear protein/RNA), RNA, snRNP, ribonucleoprotein, RNA binding protein/RNA complex; 2.38A {Homo sapiens} SCOP: c.10.2.4 Length = 176

 Score = 46.2 bits (110), Expect = 3e-06
 Identities = 21/115 (18%), Positives = 43/115 (37%), Gaps = 6/115 (5%)

Query: 197 IAYLKGLQKLTLLNLEGCPVTAACLDSL-SALGSLFYLNLNRCQLSDDGCEKFSKIGSLK 255
            A      +   L+L G  +    +++L + L     ++ +  ++     + F  +  LK
Sbjct: 12  AAQYTNAVRDRELDLRGYKIPV--IENLGATLDQFDAIDFSDNEIRK--LDGFPLLRRLK 67

Query: 256 VLNLGFNEITDECLVHLKGLTNLESLNLDSCGIGD-EGLVNLTGLCNLKCLELSD 309
            L +  N I        + L +L  L L +  + +   L  L  L +L  L +  
Sbjct: 68  TLLVNNNRICRIGEGLDQALPDLTELILTNNSLVELGDLDPLASLKSLTYLCILR 122

>1a9n_A U2A', U2A'; complex (nuclear protein/RNA), RNA, snRNP, ribonucleoprotein, RNA binding protein/RNA complex; 2.38A {Homo sapiens} SCOP: c.10.2.4 Length = 176

 Score = 46.2 bits (110), Expect = 4e-06
 Identities = 21/115 (18%), Positives = 38/115 (33%), Gaps = 6/115 (5%)

Query: 176 LSGLTNLKSLQISCSKVTDSGIAYL-KGLQKLTLLNLEGCPVTAACLDSLSALGSLFYLN 234
            +     + L +   K+    I  L   L +   ++     +    LD    L  L  L 
Sbjct: 15  YTNAVRDRELDLRGYKIPV--IENLGATLDQFDAIDFSDNEIRK--LDGFPLLRRLKTLL 70

Query: 235 LNRCQLSDDGCEKFSKIGSLKVLNLGFNEITD-ECLVHLKGLTNLESLNLDSCGI 288
           +N  ++   G      +  L  L L  N + +   L  L  L +L  L +    +
Sbjct: 71  VNNNRICRIGEGLDQALPDLTELILTNNSLVELGDLDPLASLKSLTYLCILRNPV 125

>1a9n_A U2A', U2A'; complex (nuclear protein/RNA), RNA, snRNP, ribonucleoprotein, RNA binding protein/RNA complex; 2.38A {Homo sapiens} SCOP: c.10.2.4 Length = 176

 Score = 39.6 bits (93), Expect = 6e-04
 Identities = 20/137 (14%), Positives = 48/137 (35%), Gaps = 13/137 (9%)

Query: 150 NLKGLMKLESLNIKWCNCITDSDMKPL-SGLTNLKSLQISCSKVTDSGIAYLKGLQKLTL 208
                ++   L++     I    ++ L + L    ++  S +++    +     L++L  
Sbjct: 14  QYTNAVRDRELDL-RGYKIPV--IENLGATLDQFDAIDFSDNEIRK--LDGFPLLRRLKT 68

Query: 209 LNLEGCPVTAACLDSLSALGSLFYLNLNRCQLSD-DGCEKFSKIGSLKVLNLGFNEITDE 267
           L +    +         AL  L  L L    L +    +  + + SL  L +  N +T++
Sbjct: 69  LLVNNNRICRIGEGLDQALPDLTELILTNNSLVELGDLDPLASLKSLTYLCILRNPVTNK 128

Query: 268 C------LVHLKGLTNL 278
                  +  +  +  L
Sbjct: 129 KHYRLYVIYKVPQVRVL 145

>3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium} Length = 622

 Score = 63.8 bits (155), Expect = 5e-11
 Identities = 58/286 (20%), Positives = 97/286 (33%), Gaps = 54/286 (18%)

Query: 179 LTNLKSLQISCSKVTD--SGIAYLKGLQKLTLLNLEGCPVTAACLDSL-SALGSLFYLNL 235
                 L +  S +T     +        +T L +         L SL +    L  L +
Sbjct: 39  NNGNAVLNVGESGLTTLPDCL-----PAHITTLVIPDNN-----LTSLPALPPELRTLEV 88

Query: 236 NRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNLDSCGIGDEGLVN 295
           +  QL+         +  L + +     +           + L  L +    +    L  
Sbjct: 89  SGNQLTSLPVL-PPGLLELSIFSNPLTHLPAL-------PSGLCKLWIFGNQLTS--LPV 138

Query: 296 LTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISDGSLRKLAGLSSLKSLNL 355
           L     L+ L +SD Q+ +S     S L  L + N   T +           S L+ L++
Sbjct: 139 L--PPGLQELSVSDNQL-ASLPALPSELCKLWAYNNQLTSLPML-------PSGLQELSV 188

Query: 356 DARQITDTGLAAL-TSLTGLTHLDLFGARITDSGAAYLRNF-KNLRSLEICGGGLTDAGV 413
              Q+      +L T  + L  L  +  R+T      L      L+ L + G  LT    
Sbjct: 189 SDNQLA-----SLPTLPSELYKLWAYNNRLTS-----LPALPSGLKELIVSGNRLTSLP- 237

Query: 414 KHIKDLSSLTLLNLSQNCNLTDKTLELISGLTGLVSLNVSNSRITS 459
                 S L  L +S N  LT     L    +GL+SL+V  +++T 
Sbjct: 238 ---VLPSELKELMVSGN-RLT----SLPMLPSGLLSLSVYRNQLTR 275

>3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium} Length = 622

 Score = 59.9 bits (145), Expect = 8e-10
 Identities = 59/313 (18%), Positives = 100/313 (31%), Gaps = 54/313 (17%)

Query: 175 PLSGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACL-DSLSALGSLFYL 233
           P     ++ +L I  + +T           +L  L + G  +T   L      L  L   
Sbjct: 56  PDCLPAHITTLVIPDNNLTS----LPALPPELRTLEVSGNQLT--SLPVLPPGLLELSIF 109

Query: 234 NLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNLDSCGIGDEGL 293
           +     L             L  L +  N++T            L+ L++    +     
Sbjct: 110 SNPLTHLPAL-------PSGLCKLWIFGNQLTS----LPVLPPGLQELSVSDNQLASL-- 156

Query: 294 VNLTGLCNLKCLELSDTQVGSSGLRHL-SGLTNLESINLSFTGISD-----GSLRKL--- 344
                   L  L   + Q     L  L    + L+ +++S   ++        L KL   
Sbjct: 157 --PALPSELCKLWAYNNQ-----LTSLPMLPSGLQELSVSDNQLASLPTLPSELYKLWAY 209

Query: 345 --------AGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLFGARITDSGAAYLRNFK 396
                   A  S LK L +   ++T          + L  L + G R+T           
Sbjct: 210 NNRLTSLPALPSGLKELIVSGNRLTSLP----VLPSELKELMVSGNRLTS----LPMLPS 261

Query: 397 NLRSLEICGGGLTDAGVKHIKDLSSLTLLNLSQNCNLTDKTLELISGLTGLVSLNVSNSR 456
            L SL +    LT    + +  LSS T +NL  N  L+++TL+ +  +T     +    R
Sbjct: 262 GLLSLSVYRNQLTRLP-ESLIHLSSETTVNLEGN-PLSERTLQALREITSAPGYSGPIIR 319

Query: 457 ITSAGLRHLNHAR 469
              AG       R
Sbjct: 320 FDMAGASAPRETR 332

>3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium} Length = 622

 Score = 48.4 bits (115), Expect = 4e-06
 Identities = 57/358 (15%), Positives = 109/358 (30%), Gaps = 63/358 (17%)

Query: 57  SSLLSVDLSGSDVTDSGLIHLKDCSNLQSLDFNFCIQISDGGLEHL-RGLSNLTSLSFRR 115
           +    +++  S +T    +     +++ +L       I D  L  L      L +L    
Sbjct: 40  NGNAVLNVGESGLTT---LPDCLPAHITTLV------IPDNNLTSLPALPPELRTLEVS- 89

Query: 116 NNAITAQGMKAFAGLINLVKLDLE--RCTRIHGGLVNL-----------KGLMKLESLNI 162
            N +T+       GL+ L            +  GL  L                L+ L++
Sbjct: 90  GNQLTSLP-VLPPGLLELSIFSNPLTHLPALPSGLCKLWIFGNQLTSLPVLPPGLQELSV 148

Query: 163 KWCNCITDSDMKPLSGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLN--LEGCPVTAAC 220
              N +        +  + L  L    +++T        GLQ+L++ +  L   P   + 
Sbjct: 149 -SDNQLASLP----ALPSELCKLWAYNNQLTSLP-MLPSGLQELSVSDNQLASLPTLPSE 202

Query: 221 LDSLSAL-----------GSLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECL 269
           L  L A              L  L ++  +L+            LK L +  N +T    
Sbjct: 203 LYKLWAYNNRLTSLPALPSGLKELIVSGNRLTSLPVL----PSELKELMVSGNRLTS--- 255

Query: 270 VHL-KGLTNLESLNLDSCGIGD--EGLVNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNL 326
             L    + L SL++    +    E L++L+   +   + L    +    L+ L  +T+ 
Sbjct: 256 --LPMLPSGLLSLSVYRNQLTRLPESLIHLS---SETTVNLEGNPLSERTLQALREITSA 310

Query: 327 ESINLSFTGISDGSLRKLAGLSSLKSLNLD----ARQITDTGLAALTSLTGLTHLDLF 380
              +                  +L     D    AR+                + D F
Sbjct: 311 PGYSGPIIRFDMAGASAPRETRALHLAAADWLVPAREGEPAPADRWHMFGQEDNADAF 368

>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A* Length = 567

 Score = 62.1 bits (150), Expect = 2e-10
 Identities = 35/190 (18%), Positives = 69/190 (36%), Gaps = 13/190 (6%)

Query: 176 LSGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACLDSLSALGSLFYLNL 235
           L     L+ L+        + I  ++ L  L          T     +L A+  +    L
Sbjct: 368 LESCKELQELEPENKWCLLTIILLMRALDPLLYEKE-----TLQYFSTLKAVDPMRAAYL 422

Query: 236 NRCQLSDDGCEKFSKI--GSLKVLNLGFNEITDECLVHLKGLTNLESLNLDSCGIGDEGL 293
           +  +          K+    ++VL+L   ++T   L HL+ L  +  L+L    +     
Sbjct: 423 DDLRSKFLLENSVLKMEYADVRVLHLAHKDLT--VLCHLEQLLLVTHLDLSHNRL-RALP 479

Query: 294 VNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISD-GSLRKLAGLSSLKS 352
             L  L  L+ L+ SD  + +  +  ++ L  L+ + L    +    +++ L     L  
Sbjct: 480 PALAALRCLEVLQASDNALEN--VDGVANLPRLQELLLCNNRLQQSAAIQPLVSCPRLVL 537

Query: 353 LNLDARQITD 362
           LNL    +  
Sbjct: 538 LNLQGNSLCQ 547

>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A* Length = 567

 Score = 59.0 bits (142), Expect = 2e-09
 Identities = 42/222 (18%), Positives = 75/222 (33%), Gaps = 23/222 (10%)

Query: 245 CEKFSKIGSLKVLNLGFNEIT--DECLVHLKGLTNLESLNLDSCGIGDEGLVNLTGLCNL 302
           C   +    L    L   + T     L   K L  LE          +     LT +  +
Sbjct: 342 CRDSATDEQLFRCELSVEKSTVLQSELESCKELQELEP---------ENKWCLLTIILLM 392

Query: 303 KCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISDGSLRKLAGLS-----SLKSLNLDA 357
           + L+          L++ S L  ++ +  ++             +       ++ L+L  
Sbjct: 393 RALDPL--LYEKETLQYFSTLKAVDPMRAAYLDDLRSKFLLENSVLKMEYADVRVLHLAH 450

Query: 358 RQITDTGLAALTSLTGLTHLDLFGARITDSGAAYLRNFKNLRSLEICGGGLTDAGVKHIK 417
           + +T   L  L  L  +THLDL   R+     A L   + L  L+     L +  V  + 
Sbjct: 451 KDLTV--LCHLEQLLLVTHLDLSHNRLRALPPA-LAALRCLEVLQASDNALEN--VDGVA 505

Query: 418 DLSSLTLLNLSQNCNLTDKTLELISGLTGLVSLNVSNSRITS 459
           +L  L  L L  N       ++ +     LV LN+  + +  
Sbjct: 506 NLPRLQELLLCNNRLQQSAAIQPLVSCPRLVLLNLQGNSLCQ 547

>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A* Length = 567

 Score = 56.7 bits (136), Expect = 9e-09
 Identities = 40/211 (18%), Positives = 73/211 (34%), Gaps = 13/211 (6%)

Query: 58  SLLSVDLSGSDVTDSGLIHLKDCSNLQSLDFNFCIQISDGGLEHLRGLSNLTSLSFRRNN 117
            L   +LS  + +      L+ C  LQ L+      +    L  +  +  L  L + +  
Sbjct: 350 QLFRCELS-VEKSTVLQSELESCKELQELEPENKWCL----LTIILLMRALDPLLYEKET 404

Query: 118 AITAQGMKAFAGLINLVKLDLERCTRIHGGLVNLKGLMKLESLNIKWCNCITDSDMKPLS 177
                 +KA   +     LD  R   +    V       +  L++     +T   +  L 
Sbjct: 405 LQYFSTLKAVDPM-RAAYLDDLRSKFLLENSVLKMEYADVRVLHLA-HKDLTV--LCHLE 460

Query: 178 GLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACLDSLSALGSLFYLNLNR 237
            L  +  L +S +++     A L  L+ L +L      +    +D ++ L  L  L L  
Sbjct: 461 QLLLVTHLDLSHNRLRALPPA-LAALRCLEVLQASDNALEN--VDGVANLPRLQELLLCN 517

Query: 238 CQLSD-DGCEKFSKIGSLKVLNLGFNEITDE 267
            +L      +       L +LNL  N +  E
Sbjct: 518 NRLQQSAAIQPLVSCPRLVLLNLQGNSLCQE 548

>4ay9_X Follicle-stimulating hormone receptor; hormone-receptor complex, leucine-rich repeats, LRR, GPCR; HET: TYS NAG; 2.50A {Homo sapiens} PDB: 1xwd_C* Length = 350

 Score = 61.0 bits (148), Expect = 2e-10
 Identities = 34/251 (13%), Positives = 71/251 (28%), Gaps = 29/251 (11%)

Query: 206 LTLLNLEGCPVTAACLDSLSALGSLFYLNLNRCQ-LSDDGCEKFSKIGSLKVLNL-GFNE 263
              L      +      + S  G L  + +++   L     + FS +  L  + +   N 
Sbjct: 32  AIELRFVLTKLRVIQKGAFSGFGDLEKIEISQNDVLEVIEADVFSNLPKLHEIRIEKANN 91

Query: 264 ITDECLVHLKGLTNLESLNLDSCGIGDEGLVNLTGLCNLKCLELSDTQVGSSGLRHLSGL 323
           +        + L NL+ L + + GI     V+         L++ D              
Sbjct: 92  LLYINPEAFQNLPNLQYLLISNTGIKHLPDVHKIHSLQKVLLDIQD-------------- 137

Query: 324 TNLESINLSFTGISDGSLRKLAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLFGAR 383
                 N++   I   S   L+       L L+   I +   +A                
Sbjct: 138 ------NINIHTIERNSFVGLSFE--SVILWLNKNGIQEIHNSAFNGTQLDELNLSDNNN 189

Query: 384 ITDSGAAYLRNFKNLRSLEICGGGLTDAGVKHIKDLSSLTLLNLSQNCNLTDKTLELISG 443
           + +              L+I    +       +++L  L   +         K L  +  
Sbjct: 190 LEELPNDVFHGASGPVILDISRTRIHSLPSYGLENLKKLRARSTYNL-----KKLPTLEK 244

Query: 444 LTGLVSLNVSN 454
           L  L+  +++ 
Sbjct: 245 LVALMEASLTY 255

>4ay9_X Follicle-stimulating hormone receptor; hormone-receptor complex, leucine-rich repeats, LRR, GPCR; HET: TYS NAG; 2.50A {Homo sapiens} PDB: 1xwd_C* Length = 350

 Score = 60.2 bits (146), Expect = 4e-10
 Identities = 46/304 (15%), Positives = 86/304 (28%), Gaps = 64/304 (21%)

Query: 106 SNLTSLSFRRNNAITAQGMKAFAGLINLVKLDLERC---TRIHGGLVNLKGLMKLESLNI 162
            N   L F     +      AF+G  +L K+++ +      I   +     L KL  + I
Sbjct: 30  RNAIELRFVLTK-LRVIQKGAFSGFGDLEKIEISQNDVLEVIEADV--FSNLPKLHEIRI 86

Query: 163 KWCNCITDSDMKPLSGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCP----VTA 218
           +  N +   + +    L NL+ L IS + +      +     +  LL+++       +  
Sbjct: 87  EKANNLLYINPEAFQNLPNLQYLLISNTGIKHLPDVHKIHSLQKVLLDIQDNINIHTIER 146

Query: 219 ACLDSLSALGSLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNL 278
                LS       L LN+  + +     F+     ++     N +              
Sbjct: 147 NSFVGLSFE--SVILWLNKNGIQEIHNSAFNGTQLDELNLSDNNNLE------------- 191

Query: 279 ESLNLDSCGIGDEGLVNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISD 338
             L  D                                     G +    +++S T I  
Sbjct: 192 -ELPNDV----------------------------------FHGASGPVILDISRTRIHS 216

Query: 339 GSLRKLAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLFGARITDSGAAYLRNFKNL 398
                L  L  L++ +     +    L  L  L  L    L       + A + R    L
Sbjct: 217 LPSYGLENLKKLRARST--YNLKK--LPTLEKLVALMEASLTYPSHCCAFANWRRQISEL 272

Query: 399 RSLE 402
             + 
Sbjct: 273 HPIC 276

>4ay9_X Follicle-stimulating hormone receptor; hormone-receptor complex, leucine-rich repeats, LRR, GPCR; HET: TYS NAG; 2.50A {Homo sapiens} PDB: 1xwd_C* Length = 350

 Score = 60.2 bits (146), Expect = 4e-10
 Identities = 36/257 (14%), Positives = 78/257 (30%), Gaps = 37/257 (14%)

Query: 81  SNLQSLDFNFCIQISDGGLEHLRGLSNLTSLSFRRNNAITAQGMKAFAGLINLVKLDLER 140
            N   L F    ++         G  +L  +   +N+ +       F+ L  L ++ +E+
Sbjct: 30  RNAIELRFVLT-KLRVIQKGAFSGFGDLEKIEISQNDVLEVIEADVFSNLPKLHEIRIEK 88

Query: 141 CTRIHGGLVNLKGLMKLESLNIKWCNCITDSDMKPLSGLTNLKSLQISCSKVTDSGIAYL 200
                                    N +   + +    L NL+ L IS + +      + 
Sbjct: 89  ------------------------ANNLLYINPEAFQNLPNLQYLLISNTGIKHLPDVHK 124

Query: 201 KGLQKLTLLNLEGCP----VTAACLDSLSALGSLFYLNLNRCQLSDDGCEKFSKIGSLKV 256
               +  LL+++       +       LS       L LN+  + +     F+     ++
Sbjct: 125 IHSLQKVLLDIQDNINIHTIERNSFVGLSFE--SVILWLNKNGIQEIHNSAFNGTQLDEL 182

Query: 257 LNLGFNEITDECLVHLKGLTNLESLNLDSCGIGDEGLVNLTGLCNLKCLELSD-TQVGSS 315
                N + +       G +    L++    I       L  L  L+     +  ++ + 
Sbjct: 183 NLSDNNNLEELPNDVFHGASGPVILDISRTRIHSLPSYGLENLKKLRARSTYNLKKLPT- 241

Query: 316 GLRHLSGLTNLESINLS 332
               L  L  L   +L+
Sbjct: 242 ----LEKLVALMEASLT 254

>4ay9_X Follicle-stimulating hormone receptor; hormone-receptor complex, leucine-rich repeats, LRR, GPCR; HET: TYS NAG; 2.50A {Homo sapiens} PDB: 1xwd_C* Length = 350

 Score = 45.2 bits (107), Expect = 2e-05
 Identities = 41/227 (18%), Positives = 68/227 (29%), Gaps = 42/227 (18%)

Query: 253 SLKVLNLGFNEITDECLVHLKGLTNLESLNLDSCGIGD-------EGLVNLTGLCNLKCL 305
           +   L     ++         G  +LE + +    + +         L  L  +   K  
Sbjct: 31  NAIELRFVLTKLRVIQKGAFSGFGDLEKIEISQNDVLEVIEADVFSNLPKLHEIRIEKAN 90

Query: 306 ELSDTQVGSSGLRHLSGLTNLESINLSFTGISDGSLRKLAGLSSLKSLNL-DARQITDTG 364
            L               L NL+ + +S TGI                L++ D   I    
Sbjct: 91  NLLYINPE-----AFQNLPNLQYLLISNTGIKHLPDVHKIHSLQKVLLDIQDNINIHTIE 145

Query: 365 LAALTSLTG-LTHLDLFGARITDSGAAYLRNFKNLRSLEICGGGLTDAGVKHIKDLSSLT 423
             +   L+     L L    I +                               + + L 
Sbjct: 146 RNSFVGLSFESVILWLNKNGIQEIHN-------------------------SAFNGTQLD 180

Query: 424 LLNLSQNCNLTDKTLELISGLTGLVSLNVSNSRITS---AGLRHLNH 467
            LNLS N NL +   ++  G +G V L++S +RI S    GL +L  
Sbjct: 181 ELNLSDNNNLEELPNDVFHGASGPVILDISRTRIHSLPSYGLENLKK 227

>2je0_A Acidic leucine-rich nuclear phosphoprotein 32 FAM member A; nuclear protein; 2.40A {Homo sapiens} PDB: 2je1_A Length = 149

 Score = 55.1 bits (133), Expect = 2e-09
 Identities = 29/111 (26%), Positives = 48/111 (43%), Gaps = 4/111 (3%)

Query: 273 KGLTNLESLNLDSCGIGDEGLVNLTG-LCNLKCLELSDTQVGSSGLRHLSGLTNLESINL 331
           +  ++++ L LD+    +  L  LT     L+ L   +  + S  + +L  L  L+ + L
Sbjct: 14  RTPSDVKELVLDNSRSNEGKLEGLTDEFEELEFLSTINVGLTS--IANLPKLNKLKKLEL 71

Query: 332 SFTGISDGSLRKLAGLSSLKSLNLDARQITD-TGLAALTSLTGLTHLDLFG 381
           S   +S G         +L  LNL   +I D + +  L  L  L  LDLF 
Sbjct: 72  SDNRVSGGLEVLAEKCPNLTHLNLSGNKIKDLSTIEPLKKLENLKSLDLFN 122

>2je0_A Acidic leucine-rich nuclear phosphoprotein 32 FAM member A; nuclear protein; 2.40A {Homo sapiens} PDB: 2je1_A Length = 149

 Score = 48.9 bits (117), Expect = 3e-07
 Identities = 28/111 (25%), Positives = 42/111 (37%), Gaps = 4/111 (3%)

Query: 201 KGLQKLTLLNLEGCPVTAACLDSL-SALGSLFYLNLNRCQLSDDGCEKFSKIGSLKVLNL 259
           +    +  L L+        L+ L      L +L+     L+        K+  LK L L
Sbjct: 14  RTPSDVKELVLDNSRSNEGKLEGLTDEFEELEFLSTINVGLTS--IANLPKLNKLKKLEL 71

Query: 260 GFNEITDECLVHLKGLTNLESLNLDSCGIGD-EGLVNLTGLCNLKCLELSD 309
             N ++    V  +   NL  LNL    I D   +  L  L NLK L+L +
Sbjct: 72  SDNRVSGGLEVLAEKCPNLTHLNLSGNKIKDLSTIEPLKKLENLKSLDLFN 122

>2je0_A Acidic leucine-rich nuclear phosphoprotein 32 FAM member A; nuclear protein; 2.40A {Homo sapiens} PDB: 2je1_A Length = 149

 Score = 48.9 bits (117), Expect = 3e-07
 Identities = 31/118 (26%), Positives = 45/118 (38%), Gaps = 8/118 (6%)

Query: 103 RGLSNLTSLSFRRNNAITAQGMKAFAGLINLVKLDLERC--TRIHGGLVNLKGLMKLESL 160
           R  S++  L    + +   +          L  L       T I     NL  L KL+ L
Sbjct: 14  RTPSDVKELVLDNSRSNEGKLEGLTDEFEELEFLSTINVGLTSIA----NLPKLNKLKKL 69

Query: 161 NIKWCNCITDSDMKPLSGLTNLKSLQISCSKVTD-SGIAYLKGLQKLTLLNLEGCPVT 217
            +   N ++           NL  L +S +K+ D S I  LK L+ L  L+L  C VT
Sbjct: 70  ELS-DNRVSGGLEVLAEKCPNLTHLNLSGNKIKDLSTIEPLKKLENLKSLDLFNCEVT 126

>2je0_A Acidic leucine-rich nuclear phosphoprotein 32 FAM member A; nuclear protein; 2.40A {Homo sapiens} PDB: 2je1_A Length = 149

 Score = 40.8 bits (96), Expect = 2e-04
 Identities = 32/114 (28%), Positives = 48/114 (42%), Gaps = 5/114 (4%)

Query: 347 LSSLKSLNLDARQITDTGLAALT-SLTGLTHLDLFGARITDSGAAYLRNFKNLRSLEICG 405
            S +K L LD  +  +  L  LT     L  L      +T    A L     L+ LE+  
Sbjct: 16  PSDVKELVLDNSRSNEGKLEGLTDEFEELEFLSTINVGLTS--IANLPKLNKLKKLELSD 73

Query: 406 GGLTDAGVKHIKDLSSLTLLNLSQNCNLTD-KTLELISGLTGLVSLNVSNSRIT 458
             ++       +   +LT LNLS N  + D  T+E +  L  L SL++ N  +T
Sbjct: 74  NRVSGGLEVLAEKCPNLTHLNLSGN-KIKDLSTIEPLKKLENLKSLDLFNCEVT 126

>1io0_A Tropomodulin; LRR protein, right-handed super-helix, protein binding; 1.45A {Gallus gallus} SCOP: c.10.1.1 Length = 185

 Score = 55.0 bits (133), Expect = 5e-09
 Identities = 24/132 (18%), Positives = 47/132 (35%), Gaps = 18/132 (13%)

Query: 348 SSLKSLNL-DARQITDTGLA----ALTSLTGLTHLDLFGARITDSGAAY----LRNFKNL 398
             L+ +NL +   I    L     AL + T +    + G R  D  A      L+    L
Sbjct: 36  PDLEEVNLNNIMNIPVPTLKACAEALKTNTYVKKFSIVGTRSNDPVAFALAEMLKVNNTL 95

Query: 399 RSLEICGGGLTDAGVKHI----KDLSSLTLLNLSQNCN-LTDKTLELISGL----TGLVS 449
           +SL +    ++ +G+  +    +  +SL  L +      L +     I+ +    T L+ 
Sbjct: 96  KSLNVESNFISGSGILALVEALQSNTSLIELRIDNQSQPLGNNVEMEIANMLEKNTTLLK 155

Query: 450 LNVSNSRITSAG 461
                ++     
Sbjct: 156 FGYHFTQQGPRL 167

>1io0_A Tropomodulin; LRR protein, right-handed super-helix, protein binding; 1.45A {Gallus gallus} SCOP: c.10.1.1 Length = 185

 Score = 51.5 bits (124), Expect = 7e-08
 Identities = 24/138 (17%), Positives = 45/138 (32%), Gaps = 19/138 (13%)

Query: 272 LKGLTNLESLNL-DSCGIGDEGLVNL-TGLCN---LKCLELSDTQVGSSGLRHLSGL--- 323
                +LE +NL +   I    L      L     +K   +  T+        L+ +   
Sbjct: 32  QNNDPDLEEVNLNNIMNIPVPTLKACAEALKTNTYVKKFSIVGTRSNDPVAFALAEMLKV 91

Query: 324 -TNLESINLSFTGISDGSLRKLA-GL---SSLKSLNLDAR--QITDTGLAALTSL----T 372
              L+S+N+    IS   +  L   L   +SL  L +D +   + +     + ++    T
Sbjct: 92  NNTLKSLNVESNFISGSGILALVEALQSNTSLIELRIDNQSQPLGNNVEMEIANMLEKNT 151

Query: 373 GLTHLDLFGARITDSGAA 390
            L        +      A
Sbjct: 152 TLLKFGYHFTQQGPRLRA 169

>1io0_A Tropomodulin; LRR protein, right-handed super-helix, protein binding; 1.45A {Gallus gallus} SCOP: c.10.1.1 Length = 185

 Score = 51.1 bits (123), Expect = 8e-08
 Identities = 24/130 (18%), Positives = 46/130 (35%), Gaps = 21/130 (16%)

Query: 229 SLFYLNLNR-CQLSDDGCEKFSKI----GSLKVLNLGFNEITDECLVH----LKGLTNLE 279
            L  +NLN    +     +  ++       +K  ++      D         LK    L+
Sbjct: 37  DLEEVNLNNIMNIPVPTLKACAEALKTNTYVKKFSIVGTRSNDPVAFALAEMLKVNNTLK 96

Query: 280 SLNLDSCGIGDEGLVNL-------TGLCNLKCLELSDTQVGSSGLRHLSGL----TNLES 328
           SLN++S  I   G++ L       T L  L+ ++     +G++    ++ +    T L  
Sbjct: 97  SLNVESNFISGSGILALVEALQSNTSLIELR-IDNQSQPLGNNVEMEIANMLEKNTTLLK 155

Query: 329 INLSFTGISD 338
               FT    
Sbjct: 156 FGYHFTQQGP 165

>1io0_A Tropomodulin; LRR protein, right-handed super-helix, protein binding; 1.45A {Gallus gallus} SCOP: c.10.1.1 Length = 185

 Score = 48.8 bits (117), Expect = 6e-07
 Identities = 28/146 (19%), Positives = 50/146 (34%), Gaps = 19/146 (13%)

Query: 305 LELSDTQVGSSGLRHLSGLTNLESINLS-FTGISDGSLRKLAGL----SSLKSLNLDARQ 359
            E + T V  +  R  +   +LE +NL+    I   +L+  A      + +K  ++   +
Sbjct: 17  EEPNSTDVEETLKRIQNNDPDLEEVNLNNIMNIPVPTLKACAEALKTNTYVKKFSIVGTR 76

Query: 360 ITDTG---LA-ALTSLTGLTHLDLFGARITDSGAAYLRNF----KNLRSLEI--CGGGLT 409
             D     LA  L     L  L++    I+ SG   L        +L  L I      L 
Sbjct: 77  SNDPVAFALAEMLKVNNTLKSLNVESNFISGSGILALVEALQSNTSLIELRIDNQSQPLG 136

Query: 410 DAGVKHIKDL----SSLTLLNLSQNC 431
           +     I ++    ++L         
Sbjct: 137 NNVEMEIANMLEKNTTLLKFGYHFTQ 162

>1io0_A Tropomodulin; LRR protein, right-handed super-helix, protein binding; 1.45A {Gallus gallus} SCOP: c.10.1.1 Length = 185

 Score = 41.9 bits (99), Expect = 1e-04
 Identities = 25/170 (14%), Positives = 49/170 (28%), Gaps = 47/170 (27%)

Query: 106 SNLTSLSFRRNNAITAQGMKAFAGLINLVKLDLERCTRIHGGLVNLKGLMKLESLNIKWC 165
            +L  ++      I    +KA A                      LK    ++  +I   
Sbjct: 36  PDLEEVNLNNIMNIPVPTLKACAEA--------------------LKTNTYVKKFSIVG- 74

Query: 166 NCITDSDMKPLSGL----TNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACL 221
               D     L+ +      LKSL +  + ++ SGI  L                    L
Sbjct: 75  TRSNDPVAFALAEMLKVNNTLKSLNVESNFISGSGILAL-----------------VEAL 117

Query: 222 DSLSALGSLFYLNLNRCQLSDDGCEKFSKI----GSLKVLNLGFNEITDE 267
            S ++L  L  ++     L ++   + + +     +L      F +    
Sbjct: 118 QSNTSLIEL-RIDNQSQPLGNNVEMEIANMLEKNTTLLKFGYHFTQQGPR 166

>2ell_A Acidic leucine-rich nuclear phosphoprotein 32 FAM B; phapi2 protein, silver-stainable protein SSP29, acidic prote in leucines, structural genomics; NMR {Homo sapiens} PDB: 2rr6_A 2jqd_A Length = 168

 Score = 54.0 bits (130), Expect = 8e-09
 Identities = 34/114 (29%), Positives = 49/114 (42%), Gaps = 4/114 (3%)

Query: 275 LTNLESLNLDSCGIGDEGLVNLTG-LCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSF 333
              +  L LD+C   D  +  LT    NL+ L L +  + S  + +L  L  L+ + LS 
Sbjct: 23  PAAVRELVLDNCKSNDGKIEGLTAEFVNLEFLSLINVGLIS--VSNLPKLPKLKKLELSE 80

Query: 334 TGISDGSLRKLAGLSSLKSLNLDARQITDTG-LAALTSLTGLTHLDLFGARITD 386
             I  G       L +L  LNL   ++ D   L  L  L  L  LDLF   +T+
Sbjct: 81  NRIFGGLDMLAEKLPNLTHLNLSGNKLKDISTLEPLKKLECLKSLDLFNCEVTN 134

>2ell_A Acidic leucine-rich nuclear phosphoprotein 32 FAM B; phapi2 protein, silver-stainable protein SSP29, acidic prote in leucines, structural genomics; NMR {Homo sapiens} PDB: 2rr6_A 2jqd_A Length = 168

 Score = 48.2 bits (115), Expect = 8e-07
 Identities = 29/112 (25%), Positives = 47/112 (41%), Gaps = 4/112 (3%)

Query: 179 LTNLKSLQISCSKVTDSGIAYLKG-LQKLTLLNLEGCPVTAACLDSLSALGSLFYLNLNR 237
              ++ L +   K  D  I  L      L  L+L    +    + +L  L  L  L L+ 
Sbjct: 23  PAAVRELVLDNCKSNDGKIEGLTAEFVNLEFLSLINVGLI--SVSNLPKLPKLKKLELSE 80

Query: 238 CQLSDDGCEKFSKIGSLKVLNLGFNEITD-ECLVHLKGLTNLESLNLDSCGI 288
            ++         K+ +L  LNL  N++ D   L  LK L  L+SL+L +C +
Sbjct: 81  NRIFGGLDMLAEKLPNLTHLNLSGNKLKDISTLEPLKKLECLKSLDLFNCEV 132

>2ell_A Acidic leucine-rich nuclear phosphoprotein 32 FAM B; phapi2 protein, silver-stainable protein SSP29, acidic prote in leucines, structural genomics; NMR {Homo sapiens} PDB: 2rr6_A 2jqd_A Length = 168

 Score = 47.4 bits (113), Expect = 1e-06
 Identities = 29/109 (26%), Positives = 43/109 (39%), Gaps = 4/109 (3%)

Query: 203 LQKLTLLNLEGCPVTAACLDSL-SALGSLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGF 261
              +  L L+ C      ++ L +   +L +L+L    L         K+  LK L L  
Sbjct: 23  PAAVRELVLDNCKSNDGKIEGLTAEFVNLEFLSLINVGLIS--VSNLPKLPKLKKLELSE 80

Query: 262 NEITDECLVHLKGLTNLESLNLDSCGIGD-EGLVNLTGLCNLKCLELSD 309
           N I     +  + L NL  LNL    + D   L  L  L  LK L+L +
Sbjct: 81  NRIFGGLDMLAEKLPNLTHLNLSGNKLKDISTLEPLKKLECLKSLDLFN 129

>2ell_A Acidic leucine-rich nuclear phosphoprotein 32 FAM B; phapi2 protein, silver-stainable protein SSP29, acidic prote in leucines, structural genomics; NMR {Homo sapiens} PDB: 2rr6_A 2jqd_A Length = 168

 Score = 45.9 bits (109), Expect = 4e-06
 Identities = 32/116 (27%), Positives = 47/116 (40%), Gaps = 4/116 (3%)

Query: 103 RGLSNLTSLSFRRNNAITAQGMKAFAGLINLVKLDLERCTRIHGGLVNLKGLMKLESLNI 162
           R  + +  L      +   +     A  +NL  L L     +   + NL  L KL+ L +
Sbjct: 21  RTPAAVRELVLDNCKSNDGKIEGLTAEFVNLEFLSLINV-GLIS-VSNLPKLPKLKKLEL 78

Query: 163 KWCNCITDSDMKPLSGLTNLKSLQISCSKVTD-SGIAYLKGLQKLTLLNLEGCPVT 217
              N I          L NL  L +S +K+ D S +  LK L+ L  L+L  C VT
Sbjct: 79  S-ENRIFGGLDMLAEKLPNLTHLNLSGNKLKDISTLEPLKKLECLKSLDLFNCEVT 133

>2ell_A Acidic leucine-rich nuclear phosphoprotein 32 FAM B; phapi2 protein, silver-stainable protein SSP29, acidic prote in leucines, structural genomics; NMR {Homo sapiens} PDB: 2rr6_A 2jqd_A Length = 168

 Score = 43.6 bits (103), Expect = 3e-05
 Identities = 32/133 (24%), Positives = 56/133 (42%), Gaps = 5/133 (3%)

Query: 233 LNLNRCQLSDDGCEKF-SKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNLDSCGIGDE 291
           L L+ C+ +D   E   ++  +L+ L+L    +    + +L  L  L+ L L    I   
Sbjct: 29  LVLDNCKSNDGKIEGLTAEFVNLEFLSLINVGLIS--VSNLPKLPKLKKLELSENRIFGG 86

Query: 292 GLVNLTGLCNLKCLELSDTQVGS-SGLRHLSGLTNLESINLSFTGISDGSLRKLAGLSSL 350
             +    L NL  L LS  ++   S L  L  L  L+S++L    +++ +  + +    L
Sbjct: 87  LDMLAEKLPNLTHLNLSGNKLKDISTLEPLKKLECLKSLDLFNCEVTNLNDYRESVFKLL 146

Query: 351 KSLN-LDARQITD 362
             L  LD     D
Sbjct: 147 PQLTYLDGYDRED 159

>2ell_A Acidic leucine-rich nuclear phosphoprotein 32 FAM B; phapi2 protein, silver-stainable protein SSP29, acidic prote in leucines, structural genomics; NMR {Homo sapiens} PDB: 2rr6_A 2jqd_A Length = 168

 Score = 41.3 bits (97), Expect = 2e-04
 Identities = 32/115 (27%), Positives = 51/115 (44%), Gaps = 5/115 (4%)

Query: 347 LSSLKSLNLDARQITDTGLAALTS-LTGLTHLDLFGARITDSGAAYLRNFKNLRSLEICG 405
            ++++ L LD  +  D  +  LT+    L  L L    +     + L     L+ LE+  
Sbjct: 23  PAAVRELVLDNCKSNDGKIEGLTAEFVNLEFLSLINVGLIS--VSNLPKLPKLKKLELSE 80

Query: 406 GGLTDAGVKHIKDLSSLTLLNLSQNCNLTD-KTLELISGLTGLVSLNVSNSRITS 459
             +        + L +LT LNLS N  L D  TLE +  L  L SL++ N  +T+
Sbjct: 81  NRIFGGLDMLAEKLPNLTHLNLSGN-KLKDISTLEPLKKLECLKSLDLFNCEVTN 134

>1ds9_A Outer arm dynein; leucine-rich repeat, beta-BETA-alpha cylinder, flagella, contractIle protein; NMR {Chlamydomonas reinhardtii} SCOP: c.10.3.1 PDB: 1m9l_A Length = 198

 Score = 53.9 bits (130), Expect = 1e-08
 Identities = 35/145 (24%), Positives = 56/145 (38%), Gaps = 12/145 (8%)

Query: 76  HLKDCSNLQSLDFNFCIQISDGGLEHLRGLSNLTSLSFRRNNAITAQGMKAFAGLINLVK 135
                +  + ++ +  I   +     L  L     L+    N I    + + +G+ NL  
Sbjct: 18  KSVVATEAEKVELHGMIPPIEKMDATLSTLKACKHLALS-TNNIEK--ISSLSGMENLRI 74

Query: 136 LDLERC--TRIHGGLVNLKGLMKLESLNIKWCNCITDSDMKPLSGLTNLKSLQISCSKVT 193
           L L R    +I            LE L I   N I  + +  +  L NL+ L +S +K+T
Sbjct: 75  LSLGRNLIKKIENLDAVAD---TLEELWIS-YNQI--ASLSGIEKLVNLRVLYMSNNKIT 128

Query: 194 D-SGIAYLKGLQKLTLLNLEGCPVT 217
           +   I  L  L KL  L L G P+ 
Sbjct: 129 NWGEIDKLAALDKLEDLLLAGNPLY 153

>1ds9_A Outer arm dynein; leucine-rich repeat, beta-BETA-alpha cylinder, flagella, contractIle protein; NMR {Chlamydomonas reinhardtii} SCOP: c.10.3.1 PDB: 1m9l_A Length = 198

 Score = 51.6 bits (124), Expect = 7e-08
 Identities = 33/150 (22%), Positives = 64/150 (42%), Gaps = 16/150 (10%)

Query: 223 SLSALGSLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTN-LESL 281
           +LS L +  +L L+   +        S + +L++L+LG N I    + +L  + + LE L
Sbjct: 43  TLSTLKACKHLALSTNNIEK--ISSLSGMENLRILSLGRNLIKK--IENLDAVADTLEEL 98

Query: 282 NLDSCGIGDEGLVNLTGLCNLKCLELSDTQVGS-SGLRHLSGLTNLESINLSFTGISDGS 340
            +    I    L  +  L NL+ L +S+ ++ +   +  L+ L  LE + L+   + +  
Sbjct: 99  WISYNQIAS--LSGIEKLVNLRVLYMSNNKITNWGEIDKLAALDKLEDLLLAGNPLYNDY 156

Query: 341 LRKLAG-------LSSLKSLN-LDARQITD 362
               A        +  L +L  LD   +  
Sbjct: 157 KENNATSEYRIEVVKRLPNLKKLDGMPVDV 186

>1ds9_A Outer arm dynein; leucine-rich repeat, beta-BETA-alpha cylinder, flagella, contractIle protein; NMR {Chlamydomonas reinhardtii} SCOP: c.10.3.1 PDB: 1m9l_A Length = 198

 Score = 51.2 bits (123), Expect = 1e-07
 Identities = 28/113 (24%), Positives = 45/113 (39%), Gaps = 8/113 (7%)

Query: 295 NLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISD-GSLRKLAGLSSLKSL 353
            L+ L   K L LS   +    +  LSG+ NL  ++L    I    +L  +    +L+ L
Sbjct: 43  TLSTLKACKHLALSTNNIEK--ISSLSGMENLRILSLGRNLIKKIENLDAV--ADTLEEL 98

Query: 354 NLDARQITDTGLAALTSLTGLTHLDLFGARITD-SGAAYLRNFKNLRSLEICG 405
            +   QI    L+ +  L  L  L +   +IT+      L     L  L + G
Sbjct: 99  WISYNQIAS--LSGIEKLVNLRVLYMSNNKITNWGEIDKLAALDKLEDLLLAG 149

>1ds9_A Outer arm dynein; leucine-rich repeat, beta-BETA-alpha cylinder, flagella, contractIle protein; NMR {Chlamydomonas reinhardtii} SCOP: c.10.3.1 PDB: 1m9l_A Length = 198

 Score = 42.7 bits (101), Expect = 8e-05
 Identities = 26/137 (18%), Positives = 48/137 (35%), Gaps = 31/137 (22%)

Query: 319 HLSGLTNLESINLSFTGISDGSLRKLAGLSSLKSLNLDARQITD-TGLAALTSLTGLTHL 377
            LS L   + + LS   I    +  L+G+ +L+ L+L    I     L A+     L  L
Sbjct: 43  TLSTLKACKHLALSTNNIE--KISSLSGMENLRILSLGRNLIKKIENLDAVADT--LEEL 98

Query: 378 DLFGARITDSGAAYLRNFKNLRSLEICGGGLTDAGVKHIKDLSSLTLLNLSQNCNLTDKT 437
            +   +I                            +  I+ L +L +L +S N       
Sbjct: 99  WISYNQIAS--------------------------LSGIEKLVNLRVLYMSNNKITNWGE 132

Query: 438 LELISGLTGLVSLNVSN 454
           ++ ++ L  L  L ++ 
Sbjct: 133 IDKLAALDKLEDLLLAG 149

>1wwl_A Monocyte differentiation antigen CD14; LPS, immune system; HET: NAG; 2.50A {Mus musculus} Length = 312

 Score = 54.5 bits (131), Expect = 2e-08
 Identities = 46/283 (16%), Positives = 90/283 (31%), Gaps = 27/283 (9%)

Query: 99  LEHLRGLSNLTSLSFRRNNAITAQGMKAFAGLINLVKLDLERCT---RIHGGLVNLKGLM 155
           +E   G  +L  L  R +              ++L +L +       RI  G + + G+ 
Sbjct: 36  VELYGGGRSLEYLLKRVDTEADLGQFTDIIKSLSLKRLTVRAARIPSRILFGALRVLGIS 95

Query: 156 KLESLNIKWCNCITDSDMKPLSGLTNLKSLQISCSKVTDSGIAYLKG------LQKLTLL 209
            L+ L ++    +T +   PL   T      ++   V+ +                L +L
Sbjct: 96  GLQELTLENLE-VTGTAPPPLLEATGPDLNILNLRNVSWATRDAWLAELQQWLKPGLKVL 154

Query: 210 NLEGCPVTAACLDSLSALGSLFYLNLNRCQLSDDGC-------EKFSKIGSLKVLNLGFN 262
           ++          + +    +L  L+L+      +          KF  +  L + N G  
Sbjct: 155 SIAQAHSLNFSCEQVRVFPALSTLDLSDNPELGERGLISALCPLKFPTLQVLALRNAGME 214

Query: 263 EITDECLVHLKGLTNLESLNLDSCGI-GDEGLVNLTGLCNLKCLELSDTQVGSSGLRHLS 321
             +  C         L+ L+L    +    G  +      L  L LS T      L+ + 
Sbjct: 215 TPSGVCSALAAARVQLQGLDLSHNSLRDAAGAPSCDWPSQLNSLNLSFTG-----LKQVP 269

Query: 322 G--LTNLESINLSFTGISDGSLRKLAGLSSLKSLNLDARQITD 362
                 L  ++LS+  +          L  + +L+L      D
Sbjct: 270 KGLPAKLSVLDLSYNRLD--RNPSPDELPQVGNLSLKGNPFLD 310

>1wwl_A Monocyte differentiation antigen CD14; LPS, immune system; HET: NAG; 2.50A {Mus musculus} Length = 312

 Score = 49.5 bits (118), Expect = 1e-06
 Identities = 45/249 (18%), Positives = 77/249 (30%), Gaps = 27/249 (10%)

Query: 229 SLFYLNLNRCQLSDDGCEKFSKIGS---LKVLNLGFNEITDECLVHLKGLT--NLESLNL 283
           SL  L +   ++         ++     L+ L L   E+T      L   T  +L  LNL
Sbjct: 69  SLKRLTVRAARIPSRILFGALRVLGISGLQELTLENLEVTGTAPPPLLEATGPDLNILNL 128

Query: 284 DSCGIGDEGL----VNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISDG 339
            +            +       LK L ++     +     +     L +++LS       
Sbjct: 129 RNVSWATRDAWLAELQQWLKPGLKVLSIAQAHSLNFSCEQVRVFPALSTLDLSDNPELGE 188

Query: 340 S-------LRKLAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLFGARITDS-GAAY 391
                     K   L  L   N      +    A   +   L  LDL    + D+ GA  
Sbjct: 189 RGLISALCPLKFPTLQVLALRNAGMETPSGVCSALAAARVQLQGLDLSHNSLRDAAGAPS 248

Query: 392 LRNFKNLRSLEICGGGLTDAGVKHIKD--LSSLTLLNLSQNCNLTDKTLELISGLTGLVS 449
                 L SL +   GL       +     + L++L+LS N  L          L  + +
Sbjct: 249 CDWPSQLNSLNLSFTGLK-----QVPKGLPAKLSVLDLSYN-RLD--RNPSPDELPQVGN 300

Query: 450 LNVSNSRIT 458
           L++  +   
Sbjct: 301 LSLKGNPFL 309

>1wwl_A Monocyte differentiation antigen CD14; LPS, immune system; HET: NAG; 2.50A {Mus musculus} Length = 312

 Score = 48.7 bits (116), Expect = 2e-06
 Identities = 39/222 (17%), Positives = 64/222 (28%), Gaps = 28/222 (12%)

Query: 248 FSKIGSLKVLNLGFNEITDECLVHLK---GLTNLESLNLDSCGIGDEGLVNLTGLCNLKC 304
             K  SLK L +    I    L       G++ L+ L L++  +       L        
Sbjct: 64  IIKSLSLKRLTVRAARIPSRILFGALRVLGISGLQELTLENLEVTGTAPPPLLEATGPDL 123

Query: 305 LELSDTQVGSSGLRHLSGLTNLESINLSFTGISDGSLRKLAGLSSLKSLNLDARQITDTG 364
             L+        LR++S  T    +      +             LK L++      +  
Sbjct: 124 NILN--------LRNVSWATRDAWLAELQQWL----------KPGLKVLSIAQAHSLNFS 165

Query: 365 LAALTSLTGLTHLDL----FGARITDSGAAYLRNFKNLRSLEICGGGLT---DAGVKHIK 417
              +     L+ LDL             A     F  L+ L +   G+            
Sbjct: 166 CEQVRVFPALSTLDLSDNPELGERGLISALCPLKFPTLQVLALRNAGMETPSGVCSALAA 225

Query: 418 DLSSLTLLNLSQNCNLTDKTLELISGLTGLVSLNVSNSRITS 459
               L  L+LS N              + L SLN+S + +  
Sbjct: 226 ARVQLQGLDLSHNSLRDAAGAPSCDWPSQLNSLNLSFTGLKQ 267

>1wwl_A Monocyte differentiation antigen CD14; LPS, immune system; HET: NAG; 2.50A {Mus musculus} Length = 312

 Score = 47.2 bits (112), Expect = 5e-06
 Identities = 49/246 (19%), Positives = 84/246 (34%), Gaps = 20/246 (8%)

Query: 155 MKLESLNIKWCNCITDSDMKPLSGLTNL--KSLQISCSKVTDSGIAYLKGLQKLTLLNLE 212
           + + +  I          +  +SGL  L  ++L+++ +       A    L  L L N+ 
Sbjct: 73  LTVRAARIPSRILFGALRVLGISGLQELTLENLEVTGTAPPPLLEATGPDLNILNLRNVS 132

Query: 213 GCPVTAACLDSLSALG-SLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDE---- 267
                A   +    L   L  L++ +    +  CE+     +L  L+L  N    E    
Sbjct: 133 WATRDAWLAELQQWLKPGLKVLSIAQAHSLNFSCEQVRVFPALSTLDLSDNPELGERGLI 192

Query: 268 ---CLVHLKGLTNLESLNLDSCGIGDEGLVNLTGLCNLKCLELSDTQ-VGSSGLRHLSGL 323
              C +    L  L   N                   L+ L+LS      ++G       
Sbjct: 193 SALCPLKFPTLQVLALRNAGMETPSGVCSALAAARVQLQGLDLSHNSLRDAAGAPSCDWP 252

Query: 324 TNLESINLSFTGIS--DGSLRKLAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLFG 381
           + L S+NLSFTG+      L      + L  L+L   ++      +   L  + +L L G
Sbjct: 253 SQLNSLNLSFTGLKQVPKGL-----PAKLSVLDLSYNRLD--RNPSPDELPQVGNLSLKG 305

Query: 382 ARITDS 387
               DS
Sbjct: 306 NPFLDS 311

>1wwl_A Monocyte differentiation antigen CD14; LPS, immune system; HET: NAG; 2.50A {Mus musculus} Length = 312

 Score = 43.3 bits (102), Expect = 9e-05
 Identities = 32/162 (19%), Positives = 58/162 (35%), Gaps = 10/162 (6%)

Query: 307 LSDTQVGSSGLRHLSGLTNLESINLSFTGISDGSLRKLAGLSSLKSLNLDARQITDTGLA 366
            +D    +  ++ LS L  L                ++ G+S L+ L L+  ++T T   
Sbjct: 55  EADLGQFTDIIKSLS-LKRLTVRAARIPSRILFGALRVLGISGLQELTLENLEVTGTAPP 113

Query: 367 ALTSLTG--LTHLDLFGARITDSGAAYLRNF----KNLRSLEICGGGLTDAGVKHIKDLS 420
            L   TG  L  L+L         A            L+ L I      +   + ++   
Sbjct: 114 PLLEATGPDLNILNLRNVSWATRDAWLAELQQWLKPGLKVLSIAQAHSLNFSCEQVRVFP 173

Query: 421 SLTLLNLSQNCNLTDKTLE---LISGLTGLVSLNVSNSRITS 459
           +L+ L+LS N  L ++ L           L  L + N+ + +
Sbjct: 174 ALSTLDLSDNPELGERGLISALCPLKFPTLQVLALRNAGMET 215

>2xot_A Amphoterin-induced protein 1; cell adhesion, neuronal protein, neurite growth regulation; HET: NAG BMA; 2.00A {Mus musculus} Length = 361

 Score = 54.1 bits (130), Expect = 3e-08
 Identities = 27/155 (17%), Positives = 46/155 (29%), Gaps = 28/155 (18%)

Query: 253 SLKVLNLGFNEITD-ECLVHLKGLTNLESLNLDSCGIGD------EGLVNLT-------- 297
              +L+L  N ++          LTNL SL L    +          + NL         
Sbjct: 40  YTALLDLSHNNLSRLRAEWTPTRLTNLHSLLLSHNHLNFISSEAFVPVPNLRYLDLSSNH 99

Query: 298 ----------GLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLS---FTGISDGSLRKL 344
                      L  L+ L L +  +          +  L+ + LS    +      ++  
Sbjct: 100 LHTLDEFLFSDLQALEVLLLYNNHIVVVDRNAFEDMAQLQKLYLSQNQISRFPVELIKDG 159

Query: 345 AGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDL 379
             L  L  L+L + ++    L  L  L       L
Sbjct: 160 NKLPKLMLLDLSSNKLKKLPLTDLQKLPAWVKNGL 194

>2xot_A Amphoterin-induced protein 1; cell adhesion, neuronal protein, neurite growth regulation; HET: NAG BMA; 2.00A {Mus musculus} Length = 361

 Score = 52.5 bits (126), Expect = 1e-07
 Identities = 37/156 (23%), Positives = 57/156 (36%), Gaps = 11/156 (7%)

Query: 86  LDFNFCIQISDGGLEHLRGLSNLTSLSFRRNNAITAQGMKAFAGLINLVKLDLERC--TR 143
           L  N   ++          L+NL SL    +N +     +AF  + NL  LDL       
Sbjct: 46  LSHNNLSRLRAEWT--PTRLTNLHSLLLS-HNHLNFISSEAFVPVPNLRYLDLSSNHLHT 102

Query: 144 IHGGLVNLKGLMKLESLNIKWCNCITDSDMKPLSGLTNLKSLQISCSKVT---DSGIAYL 200
           +   L     L  LE L + + N I   D      +  L+ L +S ++++      I   
Sbjct: 103 LDEFL--FSDLQALEVLLL-YNNHIVVVDRNAFEDMAQLQKLYLSQNQISRFPVELIKDG 159

Query: 201 KGLQKLTLLNLEGCPVTAACLDSLSALGSLFYLNLN 236
             L KL LL+L    +    L  L  L +     L 
Sbjct: 160 NKLPKLMLLDLSSNKLKKLPLTDLQKLPAWVKNGLY 195

>2xot_A Amphoterin-induced protein 1; cell adhesion, neuronal protein, neurite growth regulation; HET: NAG BMA; 2.00A {Mus musculus} Length = 361

 Score = 51.0 bits (122), Expect = 4e-07
 Identities = 33/184 (17%), Positives = 56/184 (30%), Gaps = 32/184 (17%)

Query: 106 SNLTSLSFRRNNAITAQGMKAFAGLINLVKLDLERC--TRIHGGLVNLKGLMKLESLNIK 163
           S    L    NN    +       L NL  L L       I                   
Sbjct: 39  SYTALLDLSHNNLSRLRAEWTPTRLTNLHSLLLSHNHLNFISSEA--------------- 83

Query: 164 WCNCITDSDMKPLSGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACLDS 223
                          + NL+ L +S + +          LQ L +L L    +     ++
Sbjct: 84  ------------FVPVPNLRYLDLSSNHLHTLDEFLFSDLQALEVLLLYNNHIVVVDRNA 131

Query: 224 LSALGSLFYLNLNRCQLS---DDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLES 280
              +  L  L L++ Q+S    +  +  +K+  L +L+L  N++    L  L+ L     
Sbjct: 132 FEDMAQLQKLYLSQNQISRFPVELIKDGNKLPKLMLLDLSSNKLKKLPLTDLQKLPAWVK 191

Query: 281 LNLD 284
             L 
Sbjct: 192 NGLY 195

>1p9a_G Platelet glycoprotein IB alpha chain precursor; platelet receptors, glycocalicin, leucine rich repeats, BLOO clotting; HET: NAG BMA; 1.70A {Homo sapiens} SCOP: c.10.2.7 PDB: 1ook_G* 1qyy_A* 3pmh_G* 1m0z_A 1m10_B 1sq0_B 1gwb_A* 1p8v_A* 1u0n_D 3p72_A Length = 290

 Score = 52.4 bits (126), Expect = 8e-08
 Identities = 41/181 (22%), Positives = 70/181 (38%), Gaps = 14/181 (7%)

Query: 206 LTLLNLEGCPVTAACLDSLSALGSLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEIT 265
            T+L+L    +    L +L     L  LNL+R +L+    +    +  L  L+L  N++ 
Sbjct: 33  TTILHLSENLLYTFSLATLMPYTRLTQLNLDRAELTK--LQVDGTLPVLGTLDLSHNQLQ 90

Query: 266 DECLVHLKGLTNLESLNLDSCGIGD--EGLVNLTGLCNLKCLELSDTQVGSSGLRHLSGL 323
              L+  + L  L  L++    +     G   L GL  L+ L L   ++ +     L+  
Sbjct: 91  SLPLL-GQTLPALTVLDVSFNRLTSLPLGA--LRGLGELQELYLKGNELKTLPPGLLTPT 147

Query: 324 TNLESINLS---FTGISDGSLRKLAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLF 380
             LE ++L+    T +  G L  L    +L +L L    +         S   L    L 
Sbjct: 148 PKLEKLSLANNNLTELPAGLLNGL---ENLDTLLLQENSLYTIPKGFFGSHL-LPFAFLH 203

Query: 381 G 381
           G
Sbjct: 204 G 204

>1p9a_G Platelet glycoprotein IB alpha chain precursor; platelet receptors, glycocalicin, leucine rich repeats, BLOO clotting; HET: NAG BMA; 1.70A {Homo sapiens} SCOP: c.10.2.7 PDB: 1ook_G* 1qyy_A* 3pmh_G* 1m0z_A 1m10_B 1sq0_B 1gwb_A* 1p8v_A* 1u0n_D 3p72_A Length = 290

 Score = 48.6 bits (116), Expect = 2e-06
 Identities = 38/158 (24%), Positives = 60/158 (37%), Gaps = 9/158 (5%)

Query: 276 TNLESLNLDSCGIGDEGLVNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSFTG 335
            +   L+L    +    L  L     L  L L   ++    L+    L  L +++LS   
Sbjct: 31  KDTTILHLSENLLYTFSLATLMPYTRLTQLNLDRAELTK--LQVDGTLPVLGTLDLSHNQ 88

Query: 336 ISDGSL-RKLAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLFGARITDSGAAYLRN 394
           +   SL      L +L  L++   ++T   L AL  L  L  L L G  +       L  
Sbjct: 89  LQ--SLPLLGQTLPALTVLDVSFNRLTSLPLGALRGLGELQELYLKGNELKTLPPGLLTP 146

Query: 395 FKNLRSLEICGGGLTD--AGVKHIKDLSSLTLLNLSQN 430
              L  L +    LT+  AG+  +  L +L  L L +N
Sbjct: 147 TPKLEKLSLANNNLTELPAGL--LNGLENLDTLLLQEN 182

>1p9a_G Platelet glycoprotein IB alpha chain precursor; platelet receptors, glycocalicin, leucine rich repeats, BLOO clotting; HET: NAG BMA; 1.70A {Homo sapiens} SCOP: c.10.2.7 PDB: 1ook_G* 1qyy_A* 3pmh_G* 1m0z_A 1m10_B 1sq0_B 1gwb_A* 1p8v_A* 1u0n_D 3p72_A Length = 290

 Score = 45.5 bits (108), Expect = 2e-05
 Identities = 34/138 (24%), Positives = 56/138 (40%), Gaps = 8/138 (5%)

Query: 324 TNLESINLSFTGISDGSLRKLAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLFGAR 383
            +   ++LS   +   SL  L   + L  LNLD  ++T   L    +L  L  LDL   +
Sbjct: 31  KDTTILHLSENLLYTFSLATLMPYTRLTQLNLDRAELTK--LQVDGTLPVLGTLDLSHNQ 88

Query: 384 ITDSGAAYLRNFKNLRSLEICGGGLTD--AGVKHIKDLSSLTLLNLSQNCNLTDKTLELI 441
           +  S     +    L  L++    LT    G   ++ L  L  L L  N  L      L+
Sbjct: 89  LQ-SLPLLGQTLPALTVLDVSFNRLTSLPLGA--LRGLGELQELYLKGN-ELKTLPPGLL 144

Query: 442 SGLTGLVSLNVSNSRITS 459
           +    L  L+++N+ +T 
Sbjct: 145 TPTPKLEKLSLANNNLTE 162

>1p9a_G Platelet glycoprotein IB alpha chain precursor; platelet receptors, glycocalicin, leucine rich repeats, BLOO clotting; HET: NAG BMA; 1.70A {Homo sapiens} SCOP: c.10.2.7 PDB: 1ook_G* 1qyy_A* 3pmh_G* 1m0z_A 1m10_B 1sq0_B 1gwb_A* 1p8v_A* 1u0n_D 3p72_A Length = 290

 Score = 42.4 bits (100), Expect = 2e-04
 Identities = 39/180 (21%), Positives = 67/180 (37%), Gaps = 29/180 (16%)

Query: 106 SNLTSLSFRRNNAITAQGMKAFAGLINLVKLDLERCTRIHGGLVNLKGLMKLESLNIKWC 165
            + T L    N  +    +        L +L+L+R               +L  L +   
Sbjct: 31  KDTTILHLSENL-LYTFSLATLMPYTRLTQLNLDRA--------------ELTKLQVDG- 74

Query: 166 NCITDSDMKPLSGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACLDSLS 225
                        L  L +L +S +++  S     + L  LT+L++    +T+  L +L 
Sbjct: 75  ------------TLPVLGTLDLSHNQLQ-SLPLLGQTLPALTVLDVSFNRLTSLPLGALR 121

Query: 226 ALGSLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNLDS 285
            LG L  L L   +L        +    L+ L+L  N +T+     L GL NL++L L  
Sbjct: 122 GLGELQELYLKGNELKTLPPGLLTPTPKLEKLSLANNNLTELPAGLLNGLENLDTLLLQE 181

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221

 Score = 53.7 bits (128), Expect = 9e-08
 Identities = 56/302 (18%), Positives = 90/302 (29%), Gaps = 75/302 (24%)

Query: 174 KPLSGLTN-LKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACLDS--LSAL-GS 229
           +P   L   L  L+     V   G   + G  K  +           CL       +   
Sbjct: 135 QPYLKLRQALLELR-PAKNVLIDG---VLGSGKTWV-------ALDVCLSYKVQCKMDFK 183

Query: 230 LFYLNLNRC---------------QLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKG 274
           +F+LNL  C               Q+  +   +     ++K   L  + I  E    LK 
Sbjct: 184 IFWLNLKNCNSPETVLEMLQKLLYQIDPNWTSRSDHSSNIK---LRIHSIQAELRRLLKS 240

Query: 275 LTNLESL-NLDSCGIGDEGLVNLTGLCNLKCLEL---SDTQV----GSSGLRHLSGLTNL 326
                 L  L    + +    N     NL C  L      QV     ++   H+S    L
Sbjct: 241 KPYENCLLVLL--NVQNAKAWNAF---NLSCKILLTTRFKQVTDFLSAATTTHIS----L 291

Query: 327 ESINLSFTGISDGSLRKLAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLFGARITD 386
           +  +++ T   D     L      K L+   +      L      T    L +    I D
Sbjct: 292 DHHSMTLT--PDEVKSLLL-----KYLDCRPQD-----LPREVLTTNPRRLSIIAESIRD 339

Query: 387 SGAAYLRNFKNL------RSLEICGGGLTDAGVKHI-KDLSSLTLLNLSQNCNLTDKTLE 439
            G A   N+K++        +E     L  A  + +   LS         + ++    L 
Sbjct: 340 -GLATWDNWKHVNCDKLTTIIESSLNVLEPAEYRKMFDRLSV-----FPPSAHIPTILLS 393

Query: 440 LI 441
           LI
Sbjct: 394 LI 395

>2o6q_A Variable lymphocyte receptor A; leucine-rich repeat protein, LRR, immune system; 2.50A {Eptatretus burgeri} Length = 270

 Score = 50.7 bits (122), Expect = 3e-07
 Identities = 45/175 (25%), Positives = 69/175 (39%), Gaps = 10/175 (5%)

Query: 232 YLNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNLDSCGIG-- 289
            L+L   +LS    + F ++  L++L L  N++        K L NLE+L +    +   
Sbjct: 41  KLDLQSNKLSSLPSKAFHRLTKLRLLYLNDNKLQTLPAGIFKELKNLETLWVTDNKLQAL 100

Query: 290 DEGLVNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLS---FTGISDGSLRKLAG 346
             G+     L NL  L L   Q+ S   R    LT L  ++L       +  G   KL  
Sbjct: 101 PIGV--FDQLVNLAELRLDRNQLKSLPPRVFDSLTKLTYLSLGYNELQSLPKGVFDKL-- 156

Query: 347 LSSLKSLNLDARQITDTGLAALTSLTGLTHLDLFGARITDSGAAYLRNFKNLRSL 401
            +SLK L L   Q+      A   LT L  L L   ++         + + L+ L
Sbjct: 157 -TSLKELRLYNNQLKRVPEGAFDKLTELKTLKLDNNQLKRVPEGAFDSLEKLKML 210

>2o6q_A Variable lymphocyte receptor A; leucine-rich repeat protein, LRR, immune system; 2.50A {Eptatretus burgeri} Length = 270

 Score = 50.0 bits (120), Expect = 5e-07
 Identities = 41/185 (22%), Positives = 59/185 (31%), Gaps = 34/185 (18%)

Query: 202 GLQKLTLLNLEGCPVTAACLDSLSALGSLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGF 261
            L KL LL L    +          L +L  L +   +L       F ++ +L  L L  
Sbjct: 59  RLTKLRLLYLNDNKLQTLPAGIFKELKNLETLWVTDNKLQALPIGVFDQLVNLAELRLDR 118

Query: 262 NEITDECLVHL-----KGLTNLESLNLDSCGIGDEGLVNLTGLCNLKCLELSDTQVGSSG 316
           N++       L       LT L  L+L            L  L                G
Sbjct: 119 NQLK-----SLPPRVFDSLTKLTYLSLGYN--------ELQSL--------------PKG 151

Query: 317 LRHLSGLTNLESINLSFTGISDGSLRKLAGLSSLKSLNLDARQITDTGLAALTSLTGLTH 376
           +     LT+L+ + L    +          L+ LK+L LD  Q+      A  SL  L  
Sbjct: 152 V--FDKLTSLKELRLYNNQLKRVPEGAFDKLTELKTLKLDNNQLKRVPEGAFDSLEKLKM 209

Query: 377 LDLFG 381
           L L  
Sbjct: 210 LQLQE 214

>2o6q_A Variable lymphocyte receptor A; leucine-rich repeat protein, LRR, immune system; 2.50A {Eptatretus burgeri} Length = 270

 Score = 47.7 bits (114), Expect = 3e-06
 Identities = 39/184 (21%), Positives = 62/184 (33%), Gaps = 11/184 (5%)

Query: 276 TNLESLNLDSCGIGDEGLVNLTGLCNLKCLELSDTQVGSSGLRHLS-----GLTNLESIN 330
            + + L+L S  +          L  L+ L L+D +     L+ L       L NLE++ 
Sbjct: 37  ADTKKLDLQSNKLSSLPSKAFHRLTKLRLLYLNDNK-----LQTLPAGIFKELKNLETLW 91

Query: 331 LSFTGISDGSLRKLAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLFGARITDSGAA 390
           ++   +    +     L +L  L LD  Q+         SLT LT+L L    +      
Sbjct: 92  VTDNKLQALPIGVFDQLVNLAELRLDRNQLKSLPPRVFDSLTKLTYLSLGYNELQSLPKG 151

Query: 391 YLRNFKNLRSLEICGGGLTDAGVKHIKDLSSLTLLNLSQNCNLTDKTLELISGLTGLVSL 450
                 +L+ L +    L          L+ L  L L  N  L          L  L  L
Sbjct: 152 VFDKLTSLKELRLYNNQLKRVPEGAFDKLTELKTLKLDNN-QLKRVPEGAFDSLEKLKML 210

Query: 451 NVSN 454
            +  
Sbjct: 211 QLQE 214

>2o6q_A Variable lymphocyte receptor A; leucine-rich repeat protein, LRR, immune system; 2.50A {Eptatretus burgeri} Length = 270

 Score = 44.6 bits (106), Expect = 3e-05
 Identities = 42/174 (24%), Positives = 65/174 (37%), Gaps = 9/174 (5%)

Query: 116 NNAITAQGMKAFAGLINLVKLDLERC--TRIHGGLVNLKGLMKLESLNIKWCNCITDSDM 173
           +N +++   KAF  L  L  L L       +  G+     L  LE+L +   N +    +
Sbjct: 46  SNKLSSLPSKAFHRLTKLRLLYLNDNKLQTLPAGIFK--ELKNLETLWVTD-NKLQALPI 102

Query: 174 KPLSGLTNLKSLQISCSKVTD--SGIAYLKGLQKLTLLNLEGCPVTAACLDSLSALGSLF 231
                L NL  L++  +++      +     L KLT L+L    + +        L SL 
Sbjct: 103 GVFDQLVNLAELRLDRNQLKSLPPRV--FDSLTKLTYLSLGYNELQSLPKGVFDKLTSLK 160

Query: 232 YLNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNLDS 285
            L L   QL       F K+  LK L L  N++          L  L+ L L  
Sbjct: 161 ELRLYNNQLKRVPEGAFDKLTELKTLKLDNNQLKRVPEGAFDSLEKLKMLQLQE 214

>2o6q_A Variable lymphocyte receptor A; leucine-rich repeat protein, LRR, immune system; 2.50A {Eptatretus burgeri} Length = 270

 Score = 43.0 bits (102), Expect = 9e-05
 Identities = 26/138 (18%), Positives = 48/138 (34%), Gaps = 5/138 (3%)

Query: 324 TNLESINLSFTGISDGSLRKLAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLFGAR 383
            + + ++L    +S    +    L+ L+ L L+  ++          L  L  L +   +
Sbjct: 37  ADTKKLDLQSNKLSSLPSKAFHRLTKLRLLYLNDNKLQTLPAGIFKELKNLETLWVTDNK 96

Query: 384 ITDSGAAYLRNFKNLRSLEICGGGLTD--AGVKHIKDLSSLTLLNLSQNCNLTDKTLELI 441
           +            NL  L +    L      V     L+ LT L+L  N  L      + 
Sbjct: 97  LQALPIGVFDQLVNLAELRLDRNQLKSLPPRV--FDSLTKLTYLSLGYN-ELQSLPKGVF 153

Query: 442 SGLTGLVSLNVSNSRITS 459
             LT L  L + N+++  
Sbjct: 154 DKLTSLKELRLYNNQLKR 171

>2o6q_A Variable lymphocyte receptor A; leucine-rich repeat protein, LRR, immune system; 2.50A {Eptatretus burgeri} Length = 270

 Score = 40.7 bits (96), Expect = 6e-04
 Identities = 36/166 (21%), Positives = 53/166 (31%), Gaps = 14/166 (8%)

Query: 103 RGLSNLTSLSFRRNNAITAQGMKAFAGLINLVKLDLERC------TRIHGGLVNLKGLMK 156
             L+ L  L    +N +       F  L NL  L +           +   LVNL  L  
Sbjct: 58  HRLTKLRLLYLN-DNKLQTLPAGIFKELKNLETLWVTDNKLQALPIGVFDQLVNLAEL-- 114

Query: 157 LESLNIKWCNCITDSDMKPLSGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPV 216
              L+    N +     +    LT L  L +  +++          L  L  L L    +
Sbjct: 115 --RLD---RNQLKSLPPRVFDSLTKLTYLSLGYNELQSLPKGVFDKLTSLKELRLYNNQL 169

Query: 217 TAACLDSLSALGSLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFN 262
                 +   L  L  L L+  QL       F  +  LK+L L  N
Sbjct: 170 KRVPEGAFDKLTELKTLKLDNNQLKRVPEGAFDSLEKLKMLQLQEN 215

>2v70_A SLIT-2, SLIT homolog 2 protein N-product; neurogenesis, glycoprotein, secreted, chemotaxis, LRR structural protein, differentiation; HET: NAG; 3.01A {Homo sapiens} Length = 220

 Score = 48.9 bits (117), Expect = 8e-07
 Identities = 35/135 (25%), Positives = 56/135 (41%), Gaps = 11/135 (8%)

Query: 253 SLKVLNLGFNEITD-ECLVHLKGLTNLESLNLDSCGIGD--EGLVNLTGLCNLKCLELSD 309
               L L  NE T  E     K L  L  +N  +  I D  EG     G   +  + L+ 
Sbjct: 33  YTAELRLNNNEFTVLEATGIFKKLPQLRKINFSNNKITDIEEGA--FEGASGVNEILLTS 90

Query: 310 TQVGSSGLRHLSGLTNLESINLSF---TGISDGSLRKLAGLSSLKSLNLDARQITDTGLA 366
            ++ +   +   GL +L+++ L     T + + S      LSS++ L+L   QIT     
Sbjct: 91  NRLENVQHKMFKGLESLKTLMLRSNRITCVGNDSFIG---LSSVRLLSLYDNQITTVAPG 147

Query: 367 ALTSLTGLTHLDLFG 381
           A  +L  L+ L+L  
Sbjct: 148 AFDTLHSLSTLNLLA 162

>2v70_A SLIT-2, SLIT homolog 2 protein N-product; neurogenesis, glycoprotein, secreted, chemotaxis, LRR structural protein, differentiation; HET: NAG; 3.01A {Homo sapiens} Length = 220

 Score = 41.6 bits (98), Expect = 2e-04
 Identities = 32/131 (24%), Positives = 53/131 (40%), Gaps = 11/131 (8%)

Query: 85  SLDFNFCIQISDGGLEHLRGLSNLTSLSFRRNNAITAQGMKAFAGLINLVKLDLE--RCT 142
            L+ N    +   G+   + L  L  ++F  NN IT     AF G   + ++ L   R  
Sbjct: 38  RLNNNEFTVLEATGI--FKKLPQLRKINFS-NNKITDIEEGAFEGASGVNEILLTSNRLE 94

Query: 143 RIHGGLVNLKGLMKLESLNIKWCNCITDSDMKPLSGLTNLKSLQISC---SKVTDSGIAY 199
            +   +   KGL  L++L ++  N IT        GL++++ L +     + V       
Sbjct: 95  NVQHKM--FKGLESLKTLMLR-SNRITCVGNDSFIGLSSVRLLSLYDNQITTVAPGAFDT 151

Query: 200 LKGLQKLTLLN 210
           L  L  L LL 
Sbjct: 152 LHSLSTLNLLA 162

>3cvr_A Invasion plasmid antigen; leucine rich repeat and alpha fold, ligase; 2.80A {Shigella flexneri 2A} Length = 571

 Score = 49.6 bits (118), Expect = 1e-06
 Identities = 42/232 (18%), Positives = 78/232 (33%), Gaps = 30/232 (12%)

Query: 233 LNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKG--LTNLESLNLDSCGIGD 290
            N     +S    + FS     +   L   E  +E +  LK   +     L L+   +  
Sbjct: 15  QNSFYNTISGTYADYFSAWDKWEKQAL-PGENRNEAVSLLKECLINQFSELQLNRLNLSS 73

Query: 291 EGLVNLTGLCNLKCLELSDTQVGSSGLRHL-SGLTNLESINLSFTGISDGSLRKLAGLSS 349
              +       +  LE++        L  L     +LE ++     +S  +L +L   +S
Sbjct: 74  ---LPDNLPPQITVLEITQNA-----LISLPELPASLEYLDACDNRLS--TLPEL--PAS 121

Query: 350 LKSLNLDARQITDTGLAALTSLTGLTHLDLFGARITDSGAAYLRNFKNLRSLEICGGGLT 409
           LK L++D  Q+T            L +++    ++T           +L  L +    LT
Sbjct: 122 LKHLDVDNNQLTMLP----ELPALLEYINADNNQLTMLPEL----PTSLEVLSVRNNQLT 173

Query: 410 DAGVKHIKDLSSLTLLNLSQNC--NLTDKTLELISGLTGLVSLNVSNSRITS 459
                  +   SL  L++S N   +L    +         +      +RIT 
Sbjct: 174 FL----PELPESLEALDVSTNLLESLPAVPVRNHHSEETEIFFRCRENRITH 221

>3cvr_A Invasion plasmid antigen; leucine rich repeat and alpha fold, ligase; 2.80A {Shigella flexneri 2A} Length = 571

 Score = 46.5 bits (110), Expect = 1e-05
 Identities = 54/309 (17%), Positives = 94/309 (30%), Gaps = 46/309 (14%)

Query: 173 MKPLSGLTNLKSLQISC--SKVTDSGIAYLKGLQKLTLLNLEGCPVTAACLDSLSALGSL 230
           M P++   +L         S       +     +K  L         +   + L  +   
Sbjct: 4   MLPINNNFSLSQNSFYNTISGTYADYFSAWDKWEKQALPGENRNEAVSLLKECL--INQF 61

Query: 231 FYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHL-KGLTNLESLNLDSCGIG 289
             L LNR  LS            + VL +  N +       L +   +LE L+       
Sbjct: 62  SELQLNRLNLSSLPDNLPP---QITVLEITQNALI-----SLPELPASLEYLDACDN--- 110

Query: 290 DEGLVNLTGL----CNLKCLELSDTQVGSSGLRHL-SGLTNLESINLSFTGISDGSLRKL 344
                 L+ L     +LK L++ + Q     L  L      LE IN          L  L
Sbjct: 111 -----RLSTLPELPASLKHLDVDNNQ-----LTMLPELPALLEYINADNN-----QLTML 155

Query: 345 -AGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLFGARITD--SGAAYLRNFKNLR-S 400
               +SL+ L++   Q+T   L  L     L  LD+    +    +      + +     
Sbjct: 156 PELPTSLEVLSVRNNQLTF--LPEL--PESLEALDVSTNLLESLPAVPVRNHHSEETEIF 211

Query: 401 LEICGGGLTDAGVKHIKDLSSLTLLNLSQNCNLTDKTLELISGLTGLVSLNVSNSRITSA 460
                  +T    ++I  L     + L  N  L+ +  E +S  T     +      + +
Sbjct: 212 FRCRENRITHIP-ENILSLDPTCTIILEDN-PLSSRIRESLSQQTAQPDYHGPRIYFSMS 269

Query: 461 GLRHLNHAR 469
             +     R
Sbjct: 270 DGQQNTLHR 278

>3cvr_A Invasion plasmid antigen; leucine rich repeat and alpha fold, ligase; 2.80A {Shigella flexneri 2A} Length = 571

 Score = 45.0 bits (106), Expect = 5e-05
 Identities = 47/288 (16%), Positives = 96/288 (33%), Gaps = 48/288 (16%)

Query: 106 SNLTSLS-FRRNNAITAQGMKAFAGLINLVKLDLERCTRIHG-GLVNLKGLMKLESLNIK 163
           +N  SLS     N I+      F+      K  L    R     L+    + +   L + 
Sbjct: 8   NNNFSLSQNSFYNTISGTYADYFSAWDKWEKQALPGENRNEAVSLLKECLINQFSELQLN 67

Query: 164 WCNCITDSDMKPLSGLTNLKSLQISCSKVT---DSGIAYLKGLQKLTLLNLEGCPVTAAC 220
               ++     P +    +  L+I+ + +    +        L+ L   +          
Sbjct: 68  -RLNLSSL---PDNLPPQITVLEITQNALISLPEL----PASLEYLDACDNR-------- 111

Query: 221 LDSL-SALGSLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLE 279
           L +L     SL +L+++  QL+            L+ +N   N++T   L  L   T+LE
Sbjct: 112 LSTLPELPASLKHLDVDNNQLTMLP----ELPALLEYINADNNQLT--MLPEL--PTSLE 163

Query: 280 SLNLDSCGIGDEGLVNLTGLCNLKCLELSDTQVGSSGLRHL----SGLTNLESINLSFTG 335
            L++ +  +    L  L    +L+ L++S        L  L        + E   + F  
Sbjct: 164 VLSVRNNQLTF--LPEL--PESLEALDVSTNL-----LESLPAVPVRNHHSEETEIFF-R 213

Query: 336 ISDGSLRKL----AGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDL 379
             +  +  +      L    ++ L+   ++     +L+  T       
Sbjct: 214 CRENRITHIPENILSLDPTCTIILEDNPLSSRIRESLSQQTAQPDYHG 261

>2xwt_C Thyrotropin receptor; signaling protein-immune system complex, GPCR, graves' disea autoimmunity, receptor-autoantibody complex; HET: NAG BMA MAN; 1.90A {Homo sapiens} PDB: 3g04_C* Length = 239

 Score = 47.7 bits (114), Expect = 3e-06
 Identities = 42/233 (18%), Positives = 77/233 (33%), Gaps = 52/233 (22%)

Query: 253 SLKVLNLGFNEITDECLVHLKGLTNLESLNLDSCG----IGDEGLVNLTGLCNLKCLELS 308
           S + L L    +          L N+  + +        +      NL+    +  +E+ 
Sbjct: 32  STQTLKLIETHLRTIPSHAFSNLPNISRIYVSIDVTLQQLESHSFYNLS---KVTHIEIR 88

Query: 309 DTQVGSSGLRHLS-----GLTNLESINLSFTGISD-GSLRKLAGLSSLKSLNL-DARQIT 361
           +T+     L ++       L  L+ + +  TG+     L K+        L + D   +T
Sbjct: 89  NTR----NLTYIDPDALKELPLLKFLGIFNTGLKMFPDLTKVYSTDIFFILEITDNPYMT 144

Query: 362 DTGLAALTSLTGLT-HLDLFGARIT--DSGAAYLRNFKNLRSLEICGGGLTDAGVKHIKD 418
              + A   L   T  L L+    T     A     F                      +
Sbjct: 145 SIPVNAFQGLCNETLTLKLYNNGFTSVQGYA-----F----------------------N 177

Query: 419 LSSLTLLNLSQNCNLTDKTLELISGL-TGLVSLNVSNSRITS---AGLRHLNH 467
            + L  + L++N  LT    +   G+ +G   L+VS + +T+    GL HL  
Sbjct: 178 GTKLDAVYLNKNKYLTVIDKDAFGGVYSGPSLLDVSQTSVTALPSKGLEHLKE 230

>2xwt_C Thyrotropin receptor; signaling protein-immune system complex, GPCR, graves' disea autoimmunity, receptor-autoantibody complex; HET: NAG BMA MAN; 1.90A {Homo sapiens} PDB: 3g04_C* Length = 239

 Score = 45.0 bits (107), Expect = 2e-05
 Identities = 34/210 (16%), Positives = 74/210 (35%), Gaps = 22/210 (10%)

Query: 206 LTLLNLEGCPVTAACLDSLSALGSLFYLNLNR-CQLSDDGCEKFSKIGSLKVLNLGFNEI 264
              L L    +      + S L ++  + ++    L       F  +  +  + +     
Sbjct: 33  TQTLKLIETHLRTIPSHAFSNLPNISRIYVSIDVTLQQLESHSFYNLSKVTHIEIRNTRN 92

Query: 265 TDECLVHL-----KGLTNLESLNLDSCGIGD-EGLVNLTGLCNLKCLELSD-TQVGSSGL 317
               L ++     K L  L+ L + + G+     L  +        LE++D   + S  +
Sbjct: 93  ----LTYIDPDALKELPLLKFLGIFNTGLKMFPDLTKVYSTDIFFILEITDNPYMTSIPV 148

Query: 318 RHLSGLTN-LESINLS---FTGISDGSLRKLAGLSSLKSLNLDA-RQITDTGLAALTSL- 371
               GL N   ++ L    FT +   +       + L ++ L+  + +T     A   + 
Sbjct: 149 NAFQGLCNETLTLKLYNNGFTSVQGYAFN----GTKLDAVYLNKNKYLTVIDKDAFGGVY 204

Query: 372 TGLTHLDLFGARITDSGAAYLRNFKNLRSL 401
           +G + LD+    +T   +  L + K L + 
Sbjct: 205 SGPSLLDVSQTSVTALPSKGLEHLKELIAR 234

>2xwt_C Thyrotropin receptor; signaling protein-immune system complex, GPCR, graves' disea autoimmunity, receptor-autoantibody complex; HET: NAG BMA MAN; 1.90A {Homo sapiens} PDB: 3g04_C* Length = 239

 Score = 43.8 bits (104), Expect = 5e-05
 Identities = 36/210 (17%), Positives = 71/210 (33%), Gaps = 11/210 (5%)

Query: 81  SNLQSLDFNFCIQISDGGLEHLRGLSNLTSLSFRRNNAITAQGMKAFAGLINLVKLDLER 140
            + Q+L       +          L N++ +    +  +      +F  L  +  +++  
Sbjct: 31  PSTQTLKLIET-HLRTIPSHAFSNLPNISRIYVSIDVTLQQLESHSFYNLSKVTHIEIRN 89

Query: 141 C---TRIHGGLVNLKGLMKLESLNIKWCNCITDSDMKPLSGLTNLKSLQISC-SKVTDSG 196
               T I      LK L  L+ L I         D+  +        L+I+    +T   
Sbjct: 90  TRNLTYIDPDA--LKELPLLKFLGIFNTGLKMFPDLTKVYSTDIFFILEITDNPYMTSIP 147

Query: 197 IAYLKGLQKLTL-LNLEGCPVTAACLDSLSALGSLFYLNLNRCQLSDDGCEK-FSKIGS- 253
           +   +GL   TL L L     T+    + +    L  + LN+ +      +  F  + S 
Sbjct: 148 VNAFQGLCNETLTLKLYNNGFTSVQGYAFNGT-KLDAVYLNKNKYLTVIDKDAFGGVYSG 206

Query: 254 LKVLNLGFNEITDECLVHLKGLTNLESLNL 283
             +L++    +T      L+ L  L + N 
Sbjct: 207 PSLLDVSQTSVTALPSKGLEHLKELIARNT 236

>3m19_A Variable lymphocyte receptor A diversity region; adaptive immunity, antibody, T cell, leucine-rich repeat, immune system; 1.70A {Petromyzon marinus} PDB: 3m18_A Length = 251

 Score = 45.1 bits (107), Expect = 2e-05
 Identities = 40/159 (25%), Positives = 61/159 (38%), Gaps = 20/159 (12%)

Query: 233 LNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNLDS------- 285
           L+L    L+      F  +  L  LNL +N++          LT L +L L +       
Sbjct: 40  LDLQSTGLATLSDATFRGLTKLTWLNLDYNQLQTLSAGVFDDLTELGTLGLANNQLASLP 99

Query: 286 CGIGDEGLVNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLS---FTGISDGSLR 342
            G+ D        L  L  L L   Q+ S        LT L+ + L+      I  G+  
Sbjct: 100 LGVFD-------HLTQLDKLYLGGNQLKSLPSGVFDRLTKLKELRLNTNQLQSIPAGAFD 152

Query: 343 KLAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLFG 381
           KL   ++L++L+L   Q+      A   L  L  + LFG
Sbjct: 153 KL---TNLQTLSLSTNQLQSVPHGAFDRLGKLQTITLFG 188

>1ogq_A PGIP-2, polygalacturonase inhibiting protein; inhibitor; HET: NAG; 1.7A {Phaseolus vulgaris} SCOP: c.10.2.8 Length = 313

 Score = 44.8 bits (107), Expect = 3e-05
 Identities = 49/247 (19%), Positives = 90/247 (36%), Gaps = 49/247 (19%)

Query: 245 CEKFSKIGSLKVLNLGFNEITDECLV--HLKGLTNLESLNLDSCGIGDEGLVNLTG---- 298
           C+  ++   +  L+L    +     +   L  L  L  L +        G+ NL G    
Sbjct: 43  CDTDTQTYRVNNLDLSGLNLPKPYPIPSSLANLPYLNFLYI-------GGINNLVGPIPP 95

Query: 299 ----LCNLKCLELSDTQVGSSGL--RHLSGLTNLESINLSFTGISDGSL-RKLAGLSSLK 351
               L  L  L ++ T V  SG     LS +  L +++ S+  +S G+L   ++ L +L 
Sbjct: 96  AIAKLTQLHYLYITHTNV--SGAIPDFLSQIKTLVTLDFSYNALS-GTLPPSISSLPNLV 152

Query: 352 SLNLDARQITDT---GLAALTSL-----------TG----------LTHLDLFGARITDS 387
            +  D  +I+        + + L           TG          L  +DL    +   
Sbjct: 153 GITFDGNRISGAIPDSYGSFSKLFTSMTISRNRLTGKIPPTFANLNLAFVDLSRNMLEGD 212

Query: 388 GAAYLRNFKNLRSLEICGGGLTDAGVKHIKDLSSLTLLNLSQNCNLTDKTLELISGLTGL 447
            +    + KN + + +    L    +  +    +L  L+L  N  +     + ++ L  L
Sbjct: 213 ASVLFGSDKNTQKIHLAKNSLAFD-LGKVGLSKNLNGLDLRNN-RIYGTLPQGLTQLKFL 270

Query: 448 VSLNVSN 454
            SLNVS 
Sbjct: 271 HSLNVSF 277

>2ifg_A High affinity nerve growth factor receptor; TRK, TRKA, receptor-ligand complex transferase; HET: NAG NDG MAN BMA; 3.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 c.10.2.7 Length = 347

 Score = 42.8 bits (100), Expect = 1e-04
 Identities = 16/85 (18%), Positives = 25/85 (29%), Gaps = 6/85 (7%)

Query: 80  CSNLQSLDFNFCIQISDGGLEHLRGLSNLTSLSFRRNNAITAQGMKAFAGLINLVKLDLE 139
                 L       +    L HL G  NLT L       +    ++   GL  L  L + 
Sbjct: 7   PHGSSGLRCTRDGALDS--LHHLPGAENLTELYIENQQHLQHLELRDLRGLGELRNLTIV 64

Query: 140 RC--TRIHGGLVNLKGLMKLESLNI 162
           +     +           +L  LN+
Sbjct: 65  KSGLRFVAPDA--FHFTPRLSRLNL 87

>2ifg_A High affinity nerve growth factor receptor; TRK, TRKA, receptor-ligand complex transferase; HET: NAG NDG MAN BMA; 3.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 c.10.2.7 Length = 347

 Score = 42.8 bits (100), Expect = 1e-04
 Identities = 18/89 (20%), Positives = 29/89 (32%), Gaps = 11/89 (12%)

Query: 301 NLKCLELSDTQVGSSGLRHLSGLTNLESINLS----FTGISDGSLRKLAGLSSLKSLNLD 356
            L+C            L HL G  NL  + +        +    LR   GL  L++L + 
Sbjct: 12  GLRCTRDGALDS----LHHLPGAENLTELYIENQQHLQHLELRDLR---GLGELRNLTIV 64

Query: 357 ARQITDTGLAALTSLTGLTHLDLFGARIT 385
              +      A      L+ L+L    + 
Sbjct: 65  KSGLRFVAPDAFHFTPRLSRLNLSFNALE 93

>2ifg_A High affinity nerve growth factor receptor; TRK, TRKA, receptor-ligand complex transferase; HET: NAG NDG MAN BMA; 3.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 c.10.2.7 Length = 347

 Score = 41.6 bits (97), Expect = 3e-04
 Identities = 23/99 (23%), Positives = 33/99 (33%), Gaps = 4/99 (4%)

Query: 72  SGLIHLKDCSNLQSLDFNFCIQISDGGLEHLRGLSNLTSLSFRRNNAITAQGMKAFAGLI 131
             L HL    NL  L       +    L  LRGL  L +L+    + +      AF    
Sbjct: 22  DSLHHLPGAENLTELYIENQQHLQHLELRDLRGLGELRNLTI-VKSGLRFVAPDAFHFTP 80

Query: 132 NLVKLDLERC--TRIHGGLVNLKGLMKLESLNIKW-CNC 167
            L +L+L       +    V    L +L        C+C
Sbjct: 81  RLSRLNLSFNALESLSWKTVQGLSLQELVLSGNPLHCSC 119

>2v9t_B SLIT homolog 2 protein N-product; structural protein-receptor complex, developmental protein, domain, roundabout, chemotaxis, LRR domain; 1.70A {Homo sapiens} PDB: 2v9s_A Length = 220

 Score = 41.6 bits (98), Expect = 2e-04
 Identities = 32/134 (23%), Positives = 50/134 (37%), Gaps = 5/134 (3%)

Query: 305 LELSDTQVGSSGLRHLSGLTNLESINLSFTGISDGSLRKLAGLSSLKSLNLDARQITDTG 364
           + L    +        S    L  I+LS   IS+ +     GL SL SL L   +IT+  
Sbjct: 37  IRLEQNTIKVIPPGAFSPYKKLRRIDLSNNQISELAPDAFQGLRSLNSLVLYGNKITELP 96

Query: 365 LAALTSLTGLTHLDLFGARITDSGAAYLRNFKNLRSLEICGGGLTDAGVKHIKDLSSLTL 424
            +    L  L  L L   +I        ++  NL  L +    L          L ++  
Sbjct: 97  KSLFEGLFSLQLLLLNANKINCLRVDAFQDLHNLNLLSLYDNKLQTIAKGTFSPLRAIQT 156

Query: 425 LNLSQN-----CNL 433
           ++L+QN     C+L
Sbjct: 157 MHLAQNPFICDCHL 170

>1pgv_A TMD-1, tropomodulin TMD-1; structural genomics, PSI, protein structure initiative, southeast collaboratory for structural genomics secsg; 1.80A {Caenorhabditis elegans} SCOP: c.10.1.1 Length = 197

 Score = 40.2 bits (94), Expect = 6e-04
 Identities = 29/165 (17%), Positives = 56/165 (33%), Gaps = 34/165 (20%)

Query: 266 DECLVHLK-GLTNLESLNLDSC-GIGDEGLVNLTGLCNLKCLELSDTQVGSSGLRHLSGL 323
           + C+  L+   T+L+ +N+++   +  E + +L                           
Sbjct: 30  ESCINRLREDDTDLKEVNINNMKRVSKERIRSLI--------------------EAACNS 69

Query: 324 TNLESINLSFTGISDGSLRKLAGL----SSLKSLNLDARQITDTGLA----ALTSLTGLT 375
            ++E  +L+ T ISD   R L  L     SL+ LN+++  +T   LA    +      + 
Sbjct: 70  KHIEKFSLANTAISDSEARGLIELIETSPSLRVLNVESNFLTPELLARLLRSTLVTQSIV 129

Query: 376 HLDLFGARITDSGAAYLRNF----KNLRSLEICGGGLTDAGVKHI 416
                  R +  G     +     +   SL   G        +H 
Sbjct: 130 EFKADNQRQSVLGNQVEMDMMMAIEENESLLRVGISFASMEARHR 174

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	469
3t6q_A	606	CD180 antigen; protein-protein complex, leucine ri	100.0
3rgz_A	768	Protein brassinosteroid insensitive 1; phytohormon	100.0
3t6q_A	606	CD180 antigen; protein-protein complex, leucine ri	100.0
3rgz_A	768	Protein brassinosteroid insensitive 1; phytohormon	100.0
4eco_A	636	Uncharacterized protein; leucine-rich repeats, pro	100.0
3vq2_A	606	TLR4, TOLL-like receptor 4; leucine rich repeat MD	100.0
2z81_A	549	CD282 antigen, TOLL-like receptor 2, variable lymp	100.0
2z63_A	570	TOLL-like receptor 4, variable lymphocyte recepto;	100.0
4ecn_A	876	Leucine-rich repeat protein; leucine-rich repeats,	100.0
1ziw_A	680	TOLL-like receptor 3; innate immunity, immune syst	100.0
3j0a_A	844	TOLL-like receptor 5; membrane protein, leucine-ri	100.0
1ziw_A	680	TOLL-like receptor 3; innate immunity, immune syst	100.0
3vq2_A	606	TLR4, TOLL-like receptor 4; leucine rich repeat MD	100.0
2z7x_B	520	TOLL-like receptor 1, variable lymphocyte recepto;	100.0
3v47_A	455	TOLL-like receptor 5B and variable lymphocyte REC	100.0
3j0a_A	844	TOLL-like receptor 5; membrane protein, leucine-ri	100.0
1z7x_W	461	Ribonuclease inhibitor; leucine-rich repeat, enzym	100.0
1z7x_W	461	Ribonuclease inhibitor; leucine-rich repeat, enzym	100.0
4eco_A	636	Uncharacterized protein; leucine-rich repeats, pro	100.0
2z7x_B	520	TOLL-like receptor 1, variable lymphocyte recepto;	100.0
2z81_A	549	CD282 antigen, TOLL-like receptor 2, variable lymp	100.0
3v47_A	455	TOLL-like receptor 5B and variable lymphocyte REC	100.0
2z63_A	570	TOLL-like receptor 4, variable lymphocyte recepto;	100.0
3a79_B	562	TLR6, VLRB.59, TOLL-like receptor 6, variable lymp	100.0
1o6v_A	466	Internalin A; bacterial infection, extracellular r	100.0
4ecn_A	876	Leucine-rich repeat protein; leucine-rich repeats,	100.0
2p1m_B	594	Transport inhibitor response 1 protein; F-BOX, leu	100.0
1o6v_A	466	Internalin A; bacterial infection, extracellular r	100.0
4fmz_A	347	Internalin; leucine rich repeat, structural genomi	100.0
3ogk_B	592	Coronatine-insensitive protein 1; leucine rich rep	100.0
4g8a_A	635	TOLL-like receptor 4; leucine rich repeat MD-2 rel	100.0
3ogk_B	592	Coronatine-insensitive protein 1; leucine rich rep	100.0
2id5_A	477	Lingo-1, leucine rich repeat neuronal 6A; CNS-spec	100.0
4fmz_A	347	Internalin; leucine rich repeat, structural genomi	99.98
3a79_B	562	TLR6, VLRB.59, TOLL-like receptor 6, variable lymp	99.98
2p1m_B	594	Transport inhibitor response 1 protein; F-BOX, leu	99.97
2id5_A	477	Lingo-1, leucine rich repeat neuronal 6A; CNS-spec	99.97
3o6n_A	390	APL1; leucine-rich repeat, protein binding; HET: N	99.97
3o6n_A	390	APL1; leucine-rich repeat, protein binding; HET: N	99.97
3oja_B	597	Anopheles plasmodium-responsive leucine-rich REPE	99.97
3bz5_A	457	Internalin-J, INLJ; leucine rich repeat (LRR), cys	99.97
3oja_B	597	Anopheles plasmodium-responsive leucine-rich REPE	99.96
4g8a_A	635	TOLL-like receptor 4; leucine rich repeat MD-2 rel	99.96
3bz5_A	457	Internalin-J, INLJ; leucine rich repeat (LRR), cys	99.96
1xku_A	330	Decorin; proteoglycan, leucine-rich repeat, struct	99.95
1jl5_A	454	Outer protein YOPM; leucine-rich repeat, molecular	99.95
1xku_A	330	Decorin; proteoglycan, leucine-rich repeat, struct	99.95
2ft3_A	332	Biglycan; proteoglycan, dimer interface, structura	99.94
2ft3_A	332	Biglycan; proteoglycan, dimer interface, structura	99.94
1ogq_A	313	PGIP-2, polygalacturonase inhibiting protein; inhi	99.94
1ogq_A	313	PGIP-2, polygalacturonase inhibiting protein; inhi	99.94
2z80_A	353	TOLL-like receptor 2, variable lymphocyte recepto;	99.94
1jl5_A	454	Outer protein YOPM; leucine-rich repeat, molecular	99.93
2z80_A	353	TOLL-like receptor 2, variable lymphocyte recepto;	99.92
2ca6_A	386	RAN GTPase-activating protein 1; GAP, GTPase activ	99.92
3o53_A	317	Protein LRIM1, AGAP006348-PA; leucine-rich repeat,	99.92
3zyi_A	452	Leucine-rich repeat-containing protein 4; cell adh	99.91
3zyj_A	440	Leucine-rich repeat-containing protein 4C; cell ad	99.91
1ozn_A	285	Reticulon 4 receptor; NOGO receptor, MAD, myelinat	99.91
3zyj_A	440	Leucine-rich repeat-containing protein 4C; cell ad	99.91
3zyi_A	452	Leucine-rich repeat-containing protein 4; cell adh	99.91
1ozn_A	285	Reticulon 4 receptor; NOGO receptor, MAD, myelinat	99.91
2z66_A	306	Variable lymphocyte receptor B, TOLL-like recepto;	99.91
2ca6_A	386	RAN GTPase-activating protein 1; GAP, GTPase activ	99.91
2ast_B	336	S-phase kinase-associated protein 2; SCF-substrate	99.9
2ast_B	336	S-phase kinase-associated protein 2; SCF-substrate	99.9
2z66_A	306	Variable lymphocyte receptor B, TOLL-like recepto;	99.9
4fcg_A	328	Uncharacterized protein; structural genomics, PSI-	99.89
3o53_A	317	Protein LRIM1, AGAP006348-PA; leucine-rich repeat,	99.89
1wwl_A	312	Monocyte differentiation antigen CD14; LPS, immune	99.89
4fcg_A	328	Uncharacterized protein; structural genomics, PSI-	99.89
3goz_A	362	Leucine-rich repeat-containing protein; LEGL7, NES	99.89
3oja_A	487	Leucine-rich immune molecule 1; coiled-coil, helix	99.89
3goz_A	362	Leucine-rich repeat-containing protein; LEGL7, NES	99.87
3g06_A	622	SSPH2 (leucine-rich repeat protein); E3 ubiquitin	99.87
3g06_A	622	SSPH2 (leucine-rich repeat protein); E3 ubiquitin	99.87
1wwl_A	312	Monocyte differentiation antigen CD14; LPS, immune	99.87
3oja_A	487	Leucine-rich immune molecule 1; coiled-coil, helix	99.87
2z62_A	276	TOLL-like receptor 4, variable lymphocyte recepto;	99.85
2o6q_A	270	Variable lymphocyte receptor A; leucine-rich repea	99.85
2z62_A	276	TOLL-like receptor 4, variable lymphocyte recepto;	99.83
4glp_A	310	Monocyte differentiation antigen CD14; alpha beta	99.83
3rfs_A	272	Internalin B, repeat modules, variable lymphocyte	99.83
1h6u_A	308	Internalin H; cell adhesion, leucine rich repeat,	99.83
2o6q_A	270	Variable lymphocyte receptor A; leucine-rich repea	99.82
3rfs_A	272	Internalin B, repeat modules, variable lymphocyte	99.82
1h6u_A	308	Internalin H; cell adhesion, leucine rich repeat,	99.81
1p9a_G	290	Platelet glycoprotein IB alpha chain precursor; pl	99.79
4glp_A	310	Monocyte differentiation antigen CD14; alpha beta	99.79
1p9a_G	290	Platelet glycoprotein IB alpha chain precursor; pl	99.78
2xwt_C	239	Thyrotropin receptor; signaling protein-immune sys	99.78
2xwt_C	239	Thyrotropin receptor; signaling protein-immune sys	99.77
3m19_A	251	Variable lymphocyte receptor A diversity region; a	99.77
3m19_A	251	Variable lymphocyte receptor A diversity region; a	99.75
1h6t_A	291	Internalin B; cell adhesion, leucine rich repeat,	99.73
4ezg_A	197	Putative uncharacterized protein; internalin-A, le	99.7
1h6t_A	291	Internalin B; cell adhesion, leucine rich repeat,	99.69
1m9s_A	605	Internalin B; cell invasion, GW domains, SH3 domai	99.68
4ezg_A	197	Putative uncharacterized protein; internalin-A, le	99.66
2o6s_A	208	Variable lymphocyte receptor B; leucine-rich repea	99.66
2xot_A	361	Amphoterin-induced protein 1; cell adhesion, neuro	99.65
1m9s_A	605	Internalin B; cell invasion, GW domains, SH3 domai	99.65
3sb4_A	329	Hypothetical leucine rich repeat protein; LRR, rig	99.63
2o6s_A	208	Variable lymphocyte receptor B; leucine-rich repea	99.63
3sb4_A	329	Hypothetical leucine rich repeat protein; LRR, rig	99.63
2v9t_B	220	SLIT homolog 2 protein N-product; structural prote	99.63
2v70_A	220	SLIT-2, SLIT homolog 2 protein N-product; neurogen	99.62
3un9_A	372	NLR family member X1; leucine rich repeat (LRR), a	99.62
4ay9_X	350	Follicle-stimulating hormone receptor; hormone-rec	99.61
3un9_A	372	NLR family member X1; leucine rich repeat (LRR), a	99.61
3e6j_A	229	Variable lymphocyte receptor diversity region; var	99.6
2xot_A	361	Amphoterin-induced protein 1; cell adhesion, neuro	99.6
3cvr_A	571	Invasion plasmid antigen; leucine rich repeat and	99.6
2v9t_B	220	SLIT homolog 2 protein N-product; structural prote	99.59
1xeu_A	263	Internalin C; cellular invasion, leucine-rich repe	99.58
4ay9_X	350	Follicle-stimulating hormone receptor; hormone-rec	99.58
2v70_A	220	SLIT-2, SLIT homolog 2 protein N-product; neurogen	99.58
2je0_A	149	Acidic leucine-rich nuclear phosphoprotein 32 FAM	99.58
3cvr_A	571	Invasion plasmid antigen; leucine rich repeat and	99.56
1xeu_A	263	Internalin C; cellular invasion, leucine-rich repe	99.55
2ell_A	168	Acidic leucine-rich nuclear phosphoprotein 32 FAM	99.54
3e6j_A	229	Variable lymphocyte receptor diversity region; var	99.54
2je0_A	149	Acidic leucine-rich nuclear phosphoprotein 32 FAM	99.53
1dce_A	567	Protein (RAB geranylgeranyltransferase alpha subun	99.52
4fdw_A	401	Leucine rich hypothetical protein; putative cell s	99.5
4fs7_A	394	Uncharacterized protein; leucine-rich repeats, pro	99.5
1dce_A	567	Protein (RAB geranylgeranyltransferase alpha subun	99.48
2ell_A	168	Acidic leucine-rich nuclear phosphoprotein 32 FAM	99.46
4fdw_A	401	Leucine rich hypothetical protein; putative cell s	99.46
4fs7_A	394	Uncharacterized protein; leucine-rich repeats, pro	99.45
1a9n_A	176	U2A', U2A'; complex (nuclear protein/RNA), RNA, sn	99.45
1w8a_A	192	SLIT protein; signaling protein, secreted protein,	99.4
1ds9_A	198	Outer arm dynein; leucine-rich repeat, beta-BETA-a	99.38
1a9n_A	176	U2A', U2A'; complex (nuclear protein/RNA), RNA, sn	99.38
2o6r_A	177	Variable lymphocyte receptor B; leucine-rich repea	99.37
2wfh_A	193	SLIT homolog 2 protein C-product; developmental pr	99.36
4b8c_D	727	Glucose-repressible alcohol dehydrogenase transcr	99.35
1w8a_A	192	SLIT protein; signaling protein, secreted protein,	99.33
2o6r_A	177	Variable lymphocyte receptor B; leucine-rich repea	99.33
2wfh_A	193	SLIT homolog 2 protein C-product; developmental pr	99.3
4b8c_D	727	Glucose-repressible alcohol dehydrogenase transcr	99.3
1ds9_A	198	Outer arm dynein; leucine-rich repeat, beta-BETA-a	99.3
2ra8_A	362	Uncharacterized protein Q64V53_bacfr; WGR domain,	99.29
4gt6_A	394	Cell surface protein; leucine rich repeats, putati	99.24
4gt6_A	394	Cell surface protein; leucine rich repeats, putati	99.18
2ra8_A	362	Uncharacterized protein Q64V53_bacfr; WGR domain,	99.17
3g39_A	170	Variable lymphocyte receptor VLRB.2D; antibody, X-	99.13
2r9u_A	174	Variable lymphocyte receptor; adaptive immunity, V	99.08
1io0_A	185	Tropomodulin; LRR protein, right-handed super-heli	99.07
3e4g_A	176	ATP synthase subunit S, mitochondrial; leucine-ric	99.06
3g39_A	170	Variable lymphocyte receptor VLRB.2D; antibody, X-	99.01
3e4g_A	176	ATP synthase subunit S, mitochondrial; leucine-ric	99.0
4h09_A	379	Hypothetical leucine rich repeat protein; two LRR_	98.95
2r9u_A	174	Variable lymphocyte receptor; adaptive immunity, V	98.95
4h09_A	379	Hypothetical leucine rich repeat protein; two LRR_	98.92
1io0_A	185	Tropomodulin; LRR protein, right-handed super-heli	98.9
2ifg_A	347	High affinity nerve growth factor receptor; TRK, T	98.82
2ifg_A	347	High affinity nerve growth factor receptor; TRK, T	98.77
3rw6_A	267	Nuclear RNA export factor 1; retroviral constituti	98.18
1pgv_A	197	TMD-1, tropomodulin TMD-1; structural genomics, PS	98.08
3rw6_A	267	Nuclear RNA export factor 1; retroviral constituti	97.96
1pgv_A	197	TMD-1, tropomodulin TMD-1; structural genomics, PS	97.88
3rfe_A	130	Platelet glycoprotein IB beta chain; platelet surf	95.2
3rfe_A	130	Platelet glycoprotein IB beta chain; platelet surf	94.56

>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A*

Probab=100.00  E-value=1e-42  Score=347.17  Aligned_cols=397  Identities=22%  Similarity=0.253  Sum_probs=192.8

Q ss_pred             CCccEEEecCCCCChHhhHhhhcCCCCCEEecCCCcccChhHhHhhhCCCCCCEEeCCCCCcCcHHHHHHHhCCCCCCEE
Q 012186           57 SSLLSVDLSGSDVTDSGLIHLKDCSNLQSLDFNFCIQISDGGLEHLRGLSNLTSLSFRRNNAITAQGMKAFAGLINLVKL  136 (469)
Q Consensus        57 ~~l~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L  136 (469)
                      +++++|+++++.+++..+..|.++++|++|++++| .+....+..|.++++|++|++++|.+ ....|..++.+++|++|
T Consensus        33 ~~l~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n-~i~~~~~~~~~~l~~L~~L~Ls~n~l-~~~~~~~~~~l~~L~~L  110 (606)
T 3t6q_A           33 NSTECLEFSFNVLPTIQNTTFSRLINLTFLDLTRC-QIYWIHEDTFQSQHRLDTLVLTANPL-IFMAETALSGPKALKHL  110 (606)
T ss_dssp             TTCCEEECTTCCCSEECTTTSTTCTTCSEEECTTC-CCCEECTTTTTTCTTCCEEECTTCCC-SEECTTTTSSCTTCCEE
T ss_pred             CcCcEEEccCCccCcCChhHhccCccceEEECCCC-ccceeChhhccCccccCeeeCCCCcc-cccChhhhcccccccEe
Confidence            45666666666666555555666666666666653 45555555566666666666666542 23334455566666666


Q ss_pred             ecccccccccccccccCCCCccEEEccCCCCCChhhhhcccCCCCCCEEEecccccChhhhhhccCCCCCC--eeeccCC
Q 012186          137 DLERCTRIHGGLVNLKGLMKLESLNIKWCNCITDSDMKPLSGLTNLKSLQISCSKVTDSGIAYLKGLQKLT--LLNLEGC  214 (469)
Q Consensus       137 ~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~l~~L~--~L~l~~~  214 (469)
                      ++++|......+..+..+++|++|++++|. +.......+..+++|++|++++|.++...+..+..+++|+  .|++++|
T Consensus       111 ~L~~n~i~~l~~~~~~~l~~L~~L~L~~n~-l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~l~L~l~~n  189 (606)
T 3t6q_A          111 FFIQTGISSIDFIPLHNQKTLESLYLGSNH-ISSIKLPKGFPTEKLKVLDFQNNAIHYLSKEDMSSLQQATNLSLNLNGN  189 (606)
T ss_dssp             ECTTSCCSCGGGSCCTTCTTCCEEECCSSC-CCCCCCCTTCCCTTCCEEECCSSCCCEECHHHHHTTTTCCSEEEECTTC
T ss_pred             eccccCcccCCcchhccCCcccEEECCCCc-ccccCcccccCCcccCEEEcccCcccccChhhhhhhcccceeEEecCCC
Confidence            666554333233445555566666665533 2222222222355555555555554443333344444444  3333333


Q ss_pred             CCc---------------------------------------------------------------------------hh
Q 012186          215 PVT---------------------------------------------------------------------------AA  219 (469)
Q Consensus       215 ~~~---------------------------------------------------------------------------~~  219 (469)
                      .+.                                                                           ..
T Consensus       190 ~l~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~l~~l~~~~~~~~~~~~i~~~~~~~l~~~~L~~L~l~~n~l~~~  269 (606)
T 3t6q_A          190 DIAGIEPGAFDSAVFQSLNFGGTQNLLVIFKGLKNSTIQSLWLGTFEDMDDEDISPAVFEGLCEMSVESINLQKHYFFNI  269 (606)
T ss_dssp             CCCEECTTTTTTCEEEEEECTTCSCHHHHHHHTTTCEEEEEECCCCTTSCCCCCCGGGGGGGGGSEEEEEECTTCCCSSC
T ss_pred             ccCccChhHhhhccccccccCCchhHHHHhhhccccchhheechhhccccccccChhHhchhhcCceeEEEeecCccCcc
Confidence            222                                                                           22


Q ss_pred             hHHhhhcCCCCcEEECCCCCCChhHHHHhhcCCCccEEEccCCCCchHHHHHhhCCCCCCEEecCCC-------------
Q 012186          220 CLDSLSALGSLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNLDSC-------------  286 (469)
Q Consensus       220 ~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~-------------  286 (469)
                      .+..+..+++|++|++++|.+.. .+..+..+++|+.|++++|.+....+..+..+++|+.|++++|             
T Consensus       270 ~~~~~~~l~~L~~L~l~~n~l~~-lp~~l~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~  348 (606)
T 3t6q_A          270 SSNTFHCFSGLQELDLTATHLSE-LPSGLVGLSTLKKLVLSANKFENLCQISASNFPSLTHLSIKGNTKRLELGTGCLEN  348 (606)
T ss_dssp             CTTTTTTCTTCSEEECTTSCCSC-CCSSCCSCTTCCEEECTTCCCSBGGGGCGGGCTTCSEEECCSCSSCCBCCSSTTTT
T ss_pred             CHHHhccccCCCEEeccCCccCC-CChhhcccccCCEEECccCCcCcCchhhhhccCcCCEEECCCCCcccccchhhhhc
Confidence            12223344455555555554442 2233444455555555555444433333444444444444444             


Q ss_pred             ------------CCChHH--HHHhhCCCCCCEEeccCCCCChhhHHHhhCCCCCcEEecccCCCCchHH-HhhhCCCCCc
Q 012186          287 ------------GIGDEG--LVNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISDGSL-RKLAGLSSLK  351 (469)
Q Consensus       287 ------------~~~~~~--~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~-~~~~~~~~L~  351 (469)
                                  .+....  +..+..+++|++|++++|.+....+..+..+++|+.|++++|.+....+ ..+..+++|+
T Consensus       349 l~~L~~L~l~~n~l~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~  428 (606)
T 3t6q_A          349 LENLRELDLSHDDIETSDCCNLQLRNLSHLQSLNLSYNEPLSLKTEAFKECPQLELLDLAFTRLKVKDAQSPFQNLHLLK  428 (606)
T ss_dssp             CTTCCEEECCSSCCCEEEESTTTTTTCTTCCEEECCSCSCEEECTTTTTTCTTCSEEECTTCCEECCTTCCTTTTCTTCC
T ss_pred             cCcCCEEECCCCccccccCcchhcccCCCCCEEECCCCcCCcCCHHHhcCCccCCeEECCCCcCCCcccchhhhCcccCC
Confidence                        333221  2223344444444444444433333334444444444444444433222 1234445555


Q ss_pred             EEEccCCCCCHHHHHHHhcCCCCCEeecCCCCCChhH---HHHhHcCCCCCeeeeCCCCCCHHHHHHHhcCCCCCeeecc
Q 012186          352 SLNLDARQITDTGLAALTSLTGLTHLDLFGARITDSG---AAYLRNFKNLRSLEICGGGLTDAGVKHIKDLSSLTLLNLS  428 (469)
Q Consensus       352 ~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~---~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~  428 (469)
                      .|++++|.++...+..+..+++|++|++++|++++..   +..+..+++|+.|++++|.+++..|..+..+++|++|+++
T Consensus       429 ~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls  508 (606)
T 3t6q_A          429 VLNLSHSLLDISSEQLFDGLPALQHLNLQGNHFPKGNIQKTNSLQTLGRLEILVLSFCDLSSIDQHAFTSLKMMNHVDLS  508 (606)
T ss_dssp             EEECTTCCCBTTCTTTTTTCTTCCEEECTTCBCGGGEECSSCGGGGCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECC
T ss_pred             EEECCCCccCCcCHHHHhCCCCCCEEECCCCCCCccccccchhhccCCCccEEECCCCccCccChhhhccccCCCEEECC
Confidence            5555555554444444445555555555555554311   1334555555555555555555555555555556666666


Q ss_pred             CCCCCChhHHHHHHhCcccccccccCCCCCH
Q 012186          429 QNCNLTDKTLELISGLTGLVSLNVSNSRITS  459 (469)
Q Consensus       429 ~~~~l~~~~~~~l~~l~~L~~L~l~~~~~~~  459 (469)
                      +| .++...++.+.++++| .|++++|+++.
T Consensus       509 ~N-~l~~~~~~~l~~l~~L-~L~L~~N~l~~  537 (606)
T 3t6q_A          509 HN-RLTSSSIEALSHLKGI-YLNLASNHISI  537 (606)
T ss_dssp             SS-CCCGGGGGGGTTCCSC-EEECCSSCCCC
T ss_pred             CC-ccCcCChhHhCccccc-EEECcCCcccc
Confidence            55 5555555555555555 55666555543

>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A*

Probab=100.00  E-value=1.3e-43  Score=361.18  Aligned_cols=401  Identities=23%  Similarity=0.220  Sum_probs=242.0

Q ss_pred             cCCCccEEEecCCCCChHhhHhhhcCCCCCEEecCCCcccChhHhHhhhCCCCCCEEeCCCCCcCcH-------------
Q 012186           55 QGSSLLSVDLSGSDVTDSGLIHLKDCSNLQSLDFNFCIQISDGGLEHLRGLSNLTSLSFRRNNAITA-------------  121 (469)
Q Consensus        55 ~~~~l~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~-------------  121 (469)
                      ..+++++|++++|.+++..|. +..+++|++|++++| .++...+..+.++++|++|++++|.+...             
T Consensus       198 ~l~~L~~L~Ls~n~l~~~~~~-l~~l~~L~~L~Ls~n-~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~~l~~L~~L~  275 (768)
T 3rgz_A          198 RCVNLEFLDVSSNNFSTGIPF-LGDCSALQHLDISGN-KLSGDFSRAISTCTELKLLNISSNQFVGPIPPLPLKSLQYLS  275 (768)
T ss_dssp             TCTTCCEEECCSSCCCSCCCB-CTTCCSCCEEECCSS-CCCSCHHHHTTTCSSCCEEECCSSCCEESCCCCCCTTCCEEE
T ss_pred             cCCcCCEEECcCCcCCCCCcc-cccCCCCCEEECcCC-cCCCcccHHHhcCCCCCEEECCCCcccCccCccccCCCCEEE
Confidence            456777777777777665554 667777777777764 45555666667777777777766653211             


Q ss_pred             --------HHHHHHhC-CCCCCEEecccccccccccccccCCCCccEEEccCCCCCChhhhhcccCCCCCCEEEeccccc
Q 012186          122 --------QGMKAFAG-LINLVKLDLERCTRIHGGLVNLKGLMKLESLNIKWCNCITDSDMKPLSGLTNLKSLQISCSKV  192 (469)
Q Consensus       122 --------~~~~~~~~-l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~  192 (469)
                              ..|..+.. +++|++|++++|......+..+..+++|++|++++|..........+..+++|++|++++|.+
T Consensus       276 L~~n~l~~~ip~~~~~~~~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~ip~~~l~~l~~L~~L~Ls~n~l  355 (768)
T 3rgz_A          276 LAENKFTGEIPDFLSGACDTLTGLDLSGNHFYGAVPPFFGSCSLLESLALSSNNFSGELPMDTLLKMRGLKVLDLSFNEF  355 (768)
T ss_dssp             CCSSEEEESCCCCSCTTCTTCSEEECCSSEEEECCCGGGGGCTTCCEEECCSSEEEEECCHHHHTTCTTCCEEECCSSEE
T ss_pred             CcCCccCCccCHHHHhhcCcCCEEECcCCcCCCccchHHhcCCCccEEECCCCcccCcCCHHHHhcCCCCCEEeCcCCcc
Confidence                    11222222 244444444444332233344444555555555543221111122244455555555555444


Q ss_pred             ChhhhhhccC---------------------------CCCCCeeeccCCCCchhhHHhhhcCCCCcEEECCCCCCChhHH
Q 012186          193 TDSGIAYLKG---------------------------LQKLTLLNLEGCPVTAACLDSLSALGSLFYLNLNRCQLSDDGC  245 (469)
Q Consensus       193 ~~~~~~~l~~---------------------------l~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~  245 (469)
                      .+..+..+..                           +++|++|++++|.+....+..+..+++|+.|++++|.+....+
T Consensus       356 ~~~~p~~l~~l~~~L~~L~Ls~N~l~~~~~~~~~~~~~~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p  435 (768)
T 3rgz_A          356 SGELPESLTNLSASLLTLDLSSNNFSGPILPNLCQNPKNTLQELYLQNNGFTGKIPPTLSNCSELVSLHLSFNYLSGTIP  435 (768)
T ss_dssp             EECCCTTHHHHTTTCSEEECCSSEEEEECCTTTTCSTTCCCCEEECCSSEEEEECCGGGGGCTTCCEEECCSSEEESCCC
T ss_pred             CccccHHHHhhhcCCcEEEccCCCcCCCcChhhhhcccCCccEEECCCCccccccCHHHhcCCCCCEEECcCCcccCccc
Confidence            3222222221                           3344445555444444444555556666666666665555555


Q ss_pred             HHhhcCCCccEEEccCCCCchHHHHHhhCCCCCCEEecCCCCCChHHHHHhhCCCCCCEEeccCCCCChhhHHHhhCCCC
Q 012186          246 EKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNLDSCGIGDEGLVNLTGLCNLKCLELSDTQVGSSGLRHLSGLTN  325 (469)
Q Consensus       246 ~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~  325 (469)
                      ..+..+++|+.|++++|.+.+..+..+..+++|+.|++++|.+.+..+..+..+++|+.|++++|.+....+..++.+++
T Consensus       436 ~~l~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~L~~N~l~~~~p~~~~~l~~  515 (768)
T 3rgz_A          436 SSLGSLSKLRDLKLWLNMLEGEIPQELMYVKTLETLILDFNDLTGEIPSGLSNCTNLNWISLSNNRLTGEIPKWIGRLEN  515 (768)
T ss_dssp             GGGGGCTTCCEEECCSSCCCSCCCGGGGGCTTCCEEECCSSCCCSCCCGGGGGCTTCCEEECCSSCCCSCCCGGGGGCTT
T ss_pred             HHHhcCCCCCEEECCCCcccCcCCHHHcCCCCceEEEecCCcccCcCCHHHhcCCCCCEEEccCCccCCcCChHHhcCCC
Confidence            55666666666666666666555555666666666666666665555555666677777777777666556666667777


Q ss_pred             CcEEecccCCCCchHHHhhhCCCCCcEEEccCCCCCHHHHHH--------------------------------------
Q 012186          326 LESINLSFTGISDGSLRKLAGLSSLKSLNLDARQITDTGLAA--------------------------------------  367 (469)
Q Consensus       326 L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~--------------------------------------  367 (469)
                      |++|++++|.+....+..+..+++|+.|++++|.+++..+..                                      
T Consensus       516 L~~L~L~~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~g~ip~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  595 (768)
T 3rgz_A          516 LAILKLSNNSFSGNIPAELGDCRSLIWLDLNTNLFNGTIPAAMFKQSGKIAANFIAGKRYVYIKNDGMKKECHGAGNLLE  595 (768)
T ss_dssp             CCEEECCSSCCEEECCGGGGGCTTCCEEECCSSEEESBCCGGGGTTTTCBCCSTTCSCEEEEEECCSCCTTCCSSEEEEE
T ss_pred             CCEEECCCCcccCcCCHHHcCCCCCCEEECCCCccCCcCChHHhcccchhhhhccccccccccccccccccccccccccc
Confidence            777777777666666666667777777777766554222211                                      


Q ss_pred             --------------------------------HhcCCCCCEeecCCCCCChhHHHHhHcCCCCCeeeeCCCCCCHHHHHH
Q 012186          368 --------------------------------LTSLTGLTHLDLFGARITDSGAAYLRNFKNLRSLEICGGGLTDAGVKH  415 (469)
Q Consensus       368 --------------------------------l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~  415 (469)
                                                      +..+++|+.|++++|++++.+|..+..++.|+.|++++|.+++..|..
T Consensus       596 ~~~~~~~~~~~l~~~~~~~l~~~~~~g~~~~~~~~l~~L~~LdLs~N~l~g~ip~~l~~l~~L~~L~Ls~N~l~g~ip~~  675 (768)
T 3rgz_A          596 FQGIRSEQLNRLSTRNPCNITSRVYGGHTSPTFDNNGSMMFLDMSYNMLSGYIPKEIGSMPYLFILNLGHNDISGSIPDE  675 (768)
T ss_dssp             CTTCCGGGGGGGGGTCCSCTTSCEEEEECCCSCSSSBCCCEEECCSSCCBSCCCGGGGGCTTCCEEECCSSCCCSCCCGG
T ss_pred             cccccchhhhccccccccccccceecccCchhhhccccccEEECcCCcccccCCHHHhccccCCEEeCcCCccCCCCChH
Confidence                                            122456777777777777777777778888888888888888777777


Q ss_pred             HhcCCCCCeeeccCCCCCChhHHHHHHhCcccccccccCCCCC
Q 012186          416 IKDLSSLTLLNLSQNCNLTDKTLELISGLTGLVSLNVSNSRIT  458 (469)
Q Consensus       416 l~~~~~L~~L~l~~~~~l~~~~~~~l~~l~~L~~L~l~~~~~~  458 (469)
                      ++.+++|+.|++++| .+++.+|..+..+++|+.|++++|+++
T Consensus       676 l~~L~~L~~LdLs~N-~l~g~ip~~l~~l~~L~~L~ls~N~l~  717 (768)
T 3rgz_A          676 VGDLRGLNILDLSSN-KLDGRIPQAMSALTMLTEIDLSNNNLS  717 (768)
T ss_dssp             GGGCTTCCEEECCSS-CCEECCCGGGGGCCCCSEEECCSSEEE
T ss_pred             HhCCCCCCEEECCCC-cccCcCChHHhCCCCCCEEECcCCccc
Confidence            888888888888888 777777777788888888888888765

>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A*

Probab=100.00  E-value=1.1e-41  Score=339.85  Aligned_cols=279  Identities=20%  Similarity=0.256  Sum_probs=222.0

Q ss_pred             cCCCCCCEEEecccccChhhhhhccCCCCCCeeeccCCCCchhhHHhhhcCCCCcEEECCCCCCChhH-HHHhhcCCCcc
Q 012186          177 SGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACLDSLSALGSLFYLNLNRCQLSDDG-CEKFSKIGSLK  255 (469)
Q Consensus       177 ~~~~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~-~~~~~~~~~L~  255 (469)
                      ..+++|++|+++++.++. .+..+..+++|++|++++|.+....+..+..+++|++|++.+|.+.... ...+..+++|+
T Consensus       275 ~~l~~L~~L~l~~n~l~~-lp~~l~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~l~~L~  353 (606)
T 3t6q_A          275 HCFSGLQELDLTATHLSE-LPSGLVGLSTLKKLVLSANKFENLCQISASNFPSLTHLSIKGNTKRLELGTGCLENLENLR  353 (606)
T ss_dssp             TTCTTCSEEECTTSCCSC-CCSSCCSCTTCCEEECTTCCCSBGGGGCGGGCTTCSEEECCSCSSCCBCCSSTTTTCTTCC
T ss_pred             ccccCCCEEeccCCccCC-CChhhcccccCCEEECccCCcCcCchhhhhccCcCCEEECCCCCcccccchhhhhccCcCC
Confidence            344555555555555542 2334555566666666666665555555666666666666666554322 23466778888


Q ss_pred             EEEccCCCCchHH--HHHhhCCCCCCEEecCCCCCChHHHHHhhCCCCCCEEeccCCCCChhhH-HHhhCCCCCcEEecc
Q 012186          256 VLNLGFNEITDEC--LVHLKGLTNLESLNLDSCGIGDEGLVNLTGLCNLKCLELSDTQVGSSGL-RHLSGLTNLESINLS  332 (469)
Q Consensus       256 ~L~l~~~~~~~~~--~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~-~~~~~~~~L~~L~l~  332 (469)
                      .|++++|.+.+..  +..+..+++|+.|++++|.+....+..+..+++|+.|++++|.+....+ ..+..+++|+.|+++
T Consensus       354 ~L~l~~n~l~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~  433 (606)
T 3t6q_A          354 ELDLSHDDIETSDCCNLQLRNLSHLQSLNLSYNEPLSLKTEAFKECPQLELLDLAFTRLKVKDAQSPFQNLHLLKVLNLS  433 (606)
T ss_dssp             EEECCSSCCCEEEESTTTTTTCTTCCEEECCSCSCEEECTTTTTTCTTCSEEECTTCCEECCTTCCTTTTCTTCCEEECT
T ss_pred             EEECCCCccccccCcchhcccCCCCCEEECCCCcCCcCCHHHhcCCccCCeEECCCCcCCCcccchhhhCcccCCEEECC
Confidence            8888888776543  5567889999999999998877767778899999999999998765443 347889999999999


Q ss_pred             cCCCCchHHHhhhCCCCCcEEEccCCCCCHHH---HHHHhcCCCCCEeecCCCCCChhHHHHhHcCCCCCeeeeCCCCCC
Q 012186          333 FTGISDGSLRKLAGLSSLKSLNLDARQITDTG---LAALTSLTGLTHLDLFGARITDSGAAYLRNFKNLRSLEICGGGLT  409 (469)
Q Consensus       333 ~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~---~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~  409 (469)
                      +|.+....+..+..+++|+.|++++|.+++..   ...+..+++|++|++++|.+++..+..+..+++|+.|++++|+++
T Consensus       434 ~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~  513 (606)
T 3t6q_A          434 HSLLDISSEQLFDGLPALQHLNLQGNHFPKGNIQKTNSLQTLGRLEILVLSFCDLSSIDQHAFTSLKMMNHVDLSHNRLT  513 (606)
T ss_dssp             TCCCBTTCTTTTTTCTTCCEEECTTCBCGGGEECSSCGGGGCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCC
T ss_pred             CCccCCcCHHHHhCCCCCCEEECCCCCCCccccccchhhccCCCccEEECCCCccCccChhhhccccCCCEEECCCCccC
Confidence            99998877888889999999999999987632   245788999999999999999988899999999999999999999


Q ss_pred             HHHHHHHhcCCCCCeeeccCCCCCChhHHHHHHhCcccccccccCCCCC
Q 012186          410 DAGVKHIKDLSSLTLLNLSQNCNLTDKTLELISGLTGLVSLNVSNSRIT  458 (469)
Q Consensus       410 ~~~~~~l~~~~~L~~L~l~~~~~l~~~~~~~l~~l~~L~~L~l~~~~~~  458 (469)
                      +..|..+..++.| +|++++| .++...+..+..+++|+.|++++|++.
T Consensus       514 ~~~~~~l~~l~~L-~L~L~~N-~l~~~~~~~~~~l~~L~~L~l~~N~~~  560 (606)
T 3t6q_A          514 SSSIEALSHLKGI-YLNLASN-HISIILPSLLPILSQQRTINLRQNPLD  560 (606)
T ss_dssp             GGGGGGGTTCCSC-EEECCSS-CCCCCCGGGHHHHHTSSEEECTTCCEE
T ss_pred             cCChhHhCccccc-EEECcCC-cccccCHhhcccCCCCCEEeCCCCCcc
Confidence            9999999999999 9999999 888888888999999999999999875

>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A*

Probab=100.00  E-value=4.4e-43  Score=357.28  Aligned_cols=396  Identities=21%  Similarity=0.171  Sum_probs=310.2

Q ss_pred             CCccEEEecCCCCChHhhHhhhc-CCCCCEEecCCCcccChhHhHhhhCCCCCCEEeCCCCCcCcHHHHHHHhCCCCCCE
Q 012186           57 SSLLSVDLSGSDVTDSGLIHLKD-CSNLQSLDFNFCIQISDGGLEHLRGLSNLTSLSFRRNNAITAQGMKAFAGLINLVK  135 (469)
Q Consensus        57 ~~l~~L~l~~~~~~~~~~~~~~~-~~~L~~L~l~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~  135 (469)
                      +++++|++++|.+++.+|..+.. +++|++|++++| .++...+..+.++++|++|++++|..........+..+++|++
T Consensus       269 ~~L~~L~L~~n~l~~~ip~~~~~~~~~L~~L~Ls~n-~l~~~~p~~~~~l~~L~~L~L~~n~l~~~ip~~~l~~l~~L~~  347 (768)
T 3rgz_A          269 KSLQYLSLAENKFTGEIPDFLSGACDTLTGLDLSGN-HFYGAVPPFFGSCSLLESLALSSNNFSGELPMDTLLKMRGLKV  347 (768)
T ss_dssp             TTCCEEECCSSEEEESCCCCSCTTCTTCSEEECCSS-EEEECCCGGGGGCTTCCEEECCSSEEEEECCHHHHTTCTTCCE
T ss_pred             CCCCEEECcCCccCCccCHHHHhhcCcCCEEECcCC-cCCCccchHHhcCCCccEEECCCCcccCcCCHHHHhcCCCCCE
Confidence            34444455544444445544443 366777777663 4555556667777777777777776432322344777777777


Q ss_pred             EecccccccccccccccCCC-CccEEEccCCCCCChhhhhcccC--CCCCCEEEecccccChhhhhhccCCCCCCeeecc
Q 012186          136 LDLERCTRIHGGLVNLKGLM-KLESLNIKWCNCITDSDMKPLSG--LTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLE  212 (469)
Q Consensus       136 L~l~~~~~~~~~~~~l~~l~-~L~~L~l~~~~~~~~~~~~~~~~--~~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~  212 (469)
                      |++++|......+..+..++ +|++|++++|. +.+..+..+..  +++|++|++.+|.+++..+..+..+++|++|+++
T Consensus       348 L~Ls~n~l~~~~p~~l~~l~~~L~~L~Ls~N~-l~~~~~~~~~~~~~~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls  426 (768)
T 3rgz_A          348 LDLSFNEFSGELPESLTNLSASLLTLDLSSNN-FSGPILPNLCQNPKNTLQELYLQNNGFTGKIPPTLSNCSELVSLHLS  426 (768)
T ss_dssp             EECCSSEEEECCCTTHHHHTTTCSEEECCSSE-EEEECCTTTTCSTTCCCCEEECCSSEEEEECCGGGGGCTTCCEEECC
T ss_pred             EeCcCCccCccccHHHHhhhcCCcEEEccCCC-cCCCcChhhhhcccCCccEEECCCCccccccCHHHhcCCCCCEEECc
Confidence            77777654445555566665 77777777743 33333444444  7789999999998887777888999999999999


Q ss_pred             CCCCchhhHHhhhcCCCCcEEECCCCCCChhHHHHhhcCCCccEEEccCCCCchHHHHHhhCCCCCCEEecCCCCCChHH
Q 012186          213 GCPVTAACLDSLSALGSLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNLDSCGIGDEG  292 (469)
Q Consensus       213 ~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~  292 (469)
                      +|.+....+..+..+++|+.|++.+|.+....+..+..+++|+.|++++|.+.+..+..+..+++|+.|++++|.+.+..
T Consensus       427 ~N~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~L~~N~l~~~~  506 (768)
T 3rgz_A          427 FNYLSGTIPSSLGSLSKLRDLKLWLNMLEGEIPQELMYVKTLETLILDFNDLTGEIPSGLSNCTNLNWISLSNNRLTGEI  506 (768)
T ss_dssp             SSEEESCCCGGGGGCTTCCEEECCSSCCCSCCCGGGGGCTTCCEEECCSSCCCSCCCGGGGGCTTCCEEECCSSCCCSCC
T ss_pred             CCcccCcccHHHhcCCCCCEEECCCCcccCcCCHHHcCCCCceEEEecCCcccCcCCHHHhcCCCCCEEEccCCccCCcC
Confidence            99888777888999999999999999998888888999999999999999998877888999999999999999988777


Q ss_pred             HHHhhCCCCCCEEeccCCCCChhhHHHhhCCCCCcEEecccCCCCchHHHh-----------------------------
Q 012186          293 LVNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISDGSLRK-----------------------------  343 (469)
Q Consensus       293 ~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~-----------------------------  343 (469)
                      +..++.+++|++|++++|.+....+..++.+++|+.|++++|.+....|..                             
T Consensus       507 p~~~~~l~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~g~ip~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  586 (768)
T 3rgz_A          507 PKWIGRLENLAILKLSNNSFSGNIPAELGDCRSLIWLDLNTNLFNGTIPAAMFKQSGKIAANFIAGKRYVYIKNDGMKKE  586 (768)
T ss_dssp             CGGGGGCTTCCEEECCSSCCEEECCGGGGGCTTCCEEECCSSEEESBCCGGGGTTTTCBCCSTTCSCEEEEEECCSCCTT
T ss_pred             ChHHhcCCCCCEEECCCCcccCcCCHHHcCCCCCCEEECCCCccCCcCChHHhcccchhhhhcccccccccccccccccc
Confidence            778889999999999999998778888999999999999998655332222                             


Q ss_pred             -----------------------------------------hhCCCCCcEEEccCCCCCHHHHHHHhcCCCCCEeecCCC
Q 012186          344 -----------------------------------------LAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLFGA  382 (469)
Q Consensus       344 -----------------------------------------~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~  382 (469)
                                                               +..+++|+.|++++|.+++..+..++.+++|+.|++++|
T Consensus       587 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~l~~~~~~g~~~~~~~~l~~L~~LdLs~N~l~g~ip~~l~~l~~L~~L~Ls~N  666 (768)
T 3rgz_A          587 CHGAGNLLEFQGIRSEQLNRLSTRNPCNITSRVYGGHTSPTFDNNGSMMFLDMSYNMLSGYIPKEIGSMPYLFILNLGHN  666 (768)
T ss_dssp             CCSSEEEEECTTCCGGGGGGGGGTCCSCTTSCEEEEECCCSCSSSBCCCEEECCSSCCBSCCCGGGGGCTTCCEEECCSS
T ss_pred             ccccccccccccccchhhhccccccccccccceecccCchhhhccccccEEECcCCcccccCCHHHhccccCCEEeCcCC
Confidence                                                     223578999999999999888889999999999999999


Q ss_pred             CCChhHHHHhHcCCCCCeeeeCCCCCCHHHHHHHhcCCCCCeeeccCCCCCChhHHHHHHhCcccccccccCCC
Q 012186          383 RITDSGAAYLRNFKNLRSLEICGGGLTDAGVKHIKDLSSLTLLNLSQNCNLTDKTLELISGLTGLVSLNVSNSR  456 (469)
Q Consensus       383 ~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~l~~~~~~~l~~l~~L~~L~l~~~~  456 (469)
                      .+++.+|..+..+++|+.|++++|++++..|..+..+++|++|++++| .+++.+|+. +.+..+....+.+|+
T Consensus       667 ~l~g~ip~~l~~L~~L~~LdLs~N~l~g~ip~~l~~l~~L~~L~ls~N-~l~g~iP~~-~~~~~~~~~~~~gN~  738 (768)
T 3rgz_A          667 DISGSIPDEVGDLRGLNILDLSSNKLDGRIPQAMSALTMLTEIDLSNN-NLSGPIPEM-GQFETFPPAKFLNNP  738 (768)
T ss_dssp             CCCSCCCGGGGGCTTCCEEECCSSCCEECCCGGGGGCCCCSEEECCSS-EEEEECCSS-SSGGGSCGGGGCSCT
T ss_pred             ccCCCCChHHhCCCCCCEEECCCCcccCcCChHHhCCCCCCEEECcCC-cccccCCCc-hhhccCCHHHhcCCc
Confidence            999999999999999999999999999999999999999999999999 777766642 334555555566653

>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697}

Probab=100.00  E-value=1.9e-42  Score=344.69  Aligned_cols=406  Identities=17%  Similarity=0.170  Sum_probs=332.1

Q ss_pred             CHHH---HHHHHhcCCCccEEEecCCCCChHhhHhhhcCCCCCEEecCCCc-----------------------------
Q 012186           45 NDKW---MDVIASQGSSLLSVDLSGSDVTDSGLIHLKDCSNLQSLDFNFCI-----------------------------   92 (469)
Q Consensus        45 ~~~~---~~~~~~~~~~l~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~-----------------------------   92 (469)
                      .+.|   .++.|....+++.|+|+++.+++.+|..++++++|++|++++|.                             
T Consensus        66 ~c~w~~~~GV~C~~~~~V~~L~L~~~~l~g~lp~~l~~L~~L~~L~Ls~N~~~~~~~~~~~~~~~~~~~~~~~~~l~l~l  145 (636)
T 4eco_A           66 LDMWGAQPGVSLNSNGRVTGLSLEGFGASGRVPDAIGQLTELEVLALGSHGEKVNERLFGPKGISANMSDEQKQKMRMHY  145 (636)
T ss_dssp             GGGTTCCTTEEECTTCCEEEEECTTSCCEEEECGGGGGCTTCCEEESCCGGGGGTCCSBSTTSBCTTCCHHHHHHHHTHH
T ss_pred             cccccCCCCeEEcCCCCEEEEEecCcccCCcCChHHhcCccceEEECcCCccccCCccccccccccCchHHHHHHHHhhH
Confidence            4566   55555444699999999999999999999999999999999862                             


Q ss_pred             ------------------------------------------------ccChhHhHhhhCCCCCCEEeCCCCCcCcHH--
Q 012186           93 ------------------------------------------------QISDGGLEHLRGLSNLTSLSFRRNNAITAQ--  122 (469)
Q Consensus        93 ------------------------------------------------~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~--  122 (469)
                                                                      .++. .|..++++++|++|++++|.+ ...  
T Consensus       146 ~~~~l~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~l~~l~l~~~~n~l~~-ip~~l~~l~~L~~L~Ls~n~l-~~~~~  223 (636)
T 4eco_A          146 QKTFVDYDPREDFSDLIKDCINSDPQQKSIKKSSRITLKDTQIGQLSNNITF-VSKAVMRLTKLRQFYMGNSPF-VAENI  223 (636)
T ss_dssp             HHHHTCCCGGGGSCHHHHHHHHHCTTSCCCCCCCCCCCCTTTTTCCSCEEEE-ECGGGGGCTTCCEEEEESCCC-CGGGB
T ss_pred             HHhhhccCchhhHHHHHHHHhhcCccccccccccccchhhhhhccccCCCcc-CCHHHhcccCCCEEECcCCcc-ccccc
Confidence                                                            2223 466788999999999999984 442  


Q ss_pred             ---------------HHHHHh--CCCCCCEEecccccccccccccccCCCCccEEEccCCCCCCh-hhhhcccCC-----
Q 012186          123 ---------------GMKAFA--GLINLVKLDLERCTRIHGGLVNLKGLMKLESLNIKWCNCITD-SDMKPLSGL-----  179 (469)
Q Consensus       123 ---------------~~~~~~--~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~-~~~~~~~~~-----  179 (469)
                                     .|..++  ++++|++|++++|......|..+.++++|++|++++|..+.. ..+..++.+     
T Consensus       224 ~~~~~~~~~~~~~~~ip~~l~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~n~~l~~~~lp~~~~~L~~~~~  303 (636)
T 4eco_A          224 CEAWENENSEYAQQYKTEDLKWDNLKDLTDVEVYNCPNLTKLPTFLKALPEMQLINVACNRGISGEQLKDDWQALADAPV  303 (636)
T ss_dssp             SSSCSCTTSHHHHHHTTSCCCGGGCTTCCEEEEECCTTCSSCCTTTTTCSSCCEEECTTCTTSCHHHHHHHHHHHHHSGG
T ss_pred             cccccccccchhcccCchhhhhcccCCCCEEEecCCcCCccChHHHhcCCCCCEEECcCCCCCccccchHHHHhhhcccc
Confidence                           788888  999999999999877777788899999999999999664665 566666665     


Q ss_pred             -CCCCEEEecccccChhhhh--hccCCCCCCeeeccCCCCchhhHHhhhcCCCCcEEECCCCCCChhHHHHhhcCCC-cc
Q 012186          180 -TNLKSLQISCSKVTDSGIA--YLKGLQKLTLLNLEGCPVTAACLDSLSALGSLFYLNLNRCQLSDDGCEKFSKIGS-LK  255 (469)
Q Consensus       180 -~~L~~L~l~~~~~~~~~~~--~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~-L~  255 (469)
                       ++|++|++++|.++ ..+.  .+..+++|++|++++|.+....+ .+..+++|+.|++++|.+. ..+..+..+++ |+
T Consensus       304 l~~L~~L~L~~n~l~-~ip~~~~l~~l~~L~~L~L~~N~l~g~ip-~~~~l~~L~~L~L~~N~l~-~lp~~l~~l~~~L~  380 (636)
T 4eco_A          304 GEKIQIIYIGYNNLK-TFPVETSLQKMKKLGMLECLYNQLEGKLP-AFGSEIKLASLNLAYNQIT-EIPANFCGFTEQVE  380 (636)
T ss_dssp             GGTCCEEECCSSCCS-SCCCHHHHTTCTTCCEEECCSCCCEEECC-CCEEEEEESEEECCSSEEE-ECCTTSEEECTTCC
T ss_pred             CCCCCEEECCCCcCC-ccCchhhhccCCCCCEEeCcCCcCccchh-hhCCCCCCCEEECCCCccc-cccHhhhhhcccCc
Confidence             99999999999998 4444  78999999999999999885455 8888999999999999887 45566888888 99


Q ss_pred             EEEccCCCCchHHHHHhhCC--CCCCEEecCCCCCChHHHHHhh-------CCCCCCEEeccCCCCChhhHHHhhCCCCC
Q 012186          256 VLNLGFNEITDECLVHLKGL--TNLESLNLDSCGIGDEGLVNLT-------GLCNLKCLELSDTQVGSSGLRHLSGLTNL  326 (469)
Q Consensus       256 ~L~l~~~~~~~~~~~~~~~l--~~L~~L~l~~~~~~~~~~~~~~-------~~~~L~~L~l~~~~~~~~~~~~~~~~~~L  326 (469)
                      .|++++|.++ ..+..+...  ++|+.|++++|.+....+..+.       .+++|+.|++++|.+.......+..+++|
T Consensus       381 ~L~Ls~N~l~-~lp~~~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~~~~~~~~~~~L~~L~Ls~N~l~~lp~~~~~~l~~L  459 (636)
T 4eco_A          381 NLSFAHNKLK-YIPNIFDAKSVSVMSAIDFSYNEIGSVDGKNFDPLDPTPFKGINVSSINLSNNQISKFPKELFSTGSPL  459 (636)
T ss_dssp             EEECCSSCCS-SCCSCCCTTCSSCEEEEECCSSCTTTTTTCSSCTTCSSCCCCCCEEEEECCSSCCCSCCTHHHHTTCCC
T ss_pred             EEEccCCcCc-ccchhhhhcccCccCEEECcCCcCCCcchhhhcccccccccCCCCCEEECcCCccCcCCHHHHccCCCC
Confidence            9999999988 455555544  4899999999988776666666       67799999999999887666667789999


Q ss_pred             cEEecccCCCCchHHHhhhCC-------CCCcEEEccCCCCCHHHHHHHh--cCCCCCEeecCCCCCChhHHHHhHcCCC
Q 012186          327 ESINLSFTGISDGSLRKLAGL-------SSLKSLNLDARQITDTGLAALT--SLTGLTHLDLFGARITDSGAAYLRNFKN  397 (469)
Q Consensus       327 ~~L~l~~~~~~~~~~~~~~~~-------~~L~~L~l~~~~~~~~~~~~l~--~~~~L~~L~l~~~~~~~~~~~~~~~~~~  397 (469)
                      +.|++++|.+.......+...       ++|+.|++++|.++.. +..+.  .+++|++|++++|++++ +|..+..+++
T Consensus       460 ~~L~Ls~N~l~~i~~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~l-p~~~~~~~l~~L~~L~Ls~N~l~~-ip~~~~~l~~  537 (636)
T 4eco_A          460 SSINLMGNMLTEIPKNSLKDENENFKNTYLLTSIDLRFNKLTKL-SDDFRATTLPYLVGIDLSYNSFSK-FPTQPLNSST  537 (636)
T ss_dssp             SEEECCSSCCSBCCSSSSEETTEECTTGGGCCEEECCSSCCCBC-CGGGSTTTCTTCCEEECCSSCCSS-CCCGGGGCSS
T ss_pred             CEEECCCCCCCCcCHHHhccccccccccCCccEEECcCCcCCcc-ChhhhhccCCCcCEEECCCCCCCC-cChhhhcCCC
Confidence            999999998885443333322       3999999999999954 45554  89999999999999998 6788889999


Q ss_pred             CCeeee------CCCCCCHHHHHHHhcCCCCCeeeccCCCCCChhHHHHHHhCcccccccccCCCCCHHHH
Q 012186          398 LRSLEI------CGGGLTDAGVKHIKDLSSLTLLNLSQNCNLTDKTLELISGLTGLVSLNVSNSRITSAGL  462 (469)
Q Consensus       398 L~~L~l------~~~~~~~~~~~~l~~~~~L~~L~l~~~~~l~~~~~~~l~~l~~L~~L~l~~~~~~~~~~  462 (469)
                      |+.|++      ++|.+.+..|..+..+++|++|++++| .++.. |..+.  ++|+.|++++|++...++
T Consensus       538 L~~L~Ls~N~~ls~N~l~~~~p~~l~~l~~L~~L~Ls~N-~l~~i-p~~~~--~~L~~L~Ls~N~l~~~~~  604 (636)
T 4eco_A          538 LKGFGIRNQRDAQGNRTLREWPEGITLCPSLTQLQIGSN-DIRKV-NEKIT--PNISVLDIKDNPNISIDL  604 (636)
T ss_dssp             CCEEECCSCBCTTCCBCCCCCCTTGGGCSSCCEEECCSS-CCCBC-CSCCC--TTCCEEECCSCTTCEEEC
T ss_pred             CCEEECCCCcccccCcccccChHHHhcCCCCCEEECCCC-cCCcc-CHhHh--CcCCEEECcCCCCccccH
Confidence            999999      457778888889999999999999999 66554 43333  899999999998876543

>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A*

Probab=100.00  E-value=3.4e-41  Score=336.16  Aligned_cols=397  Identities=23%  Similarity=0.232  Sum_probs=251.3

Q ss_pred             CCCccEEEecCCCCChHhhHhhhcCCCCCEEecCCCcccChhHhHhhhCCCCCCEEeCCCCCcCcHHHHHHHhCCCCCCE
Q 012186           56 GSSLLSVDLSGSDVTDSGLIHLKDCSNLQSLDFNFCIQISDGGLEHLRGLSNLTSLSFRRNNAITAQGMKAFAGLINLVK  135 (469)
Q Consensus        56 ~~~l~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~  135 (469)
                      ++++++|+++++.+++..+..|.++++|++|++++| .++...+..|.++++|++|++++|.+ ....|..++.+++|++
T Consensus        31 ~~~l~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n-~l~~i~~~~~~~l~~L~~L~Ls~n~l-~~~~p~~~~~l~~L~~  108 (606)
T 3vq2_A           31 PSSTKNIDLSFNPLKILKSYSFSNFSELQWLDLSRC-EIETIEDKAWHGLHHLSNLILTGNPI-QSFSPGSFSGLTSLEN  108 (606)
T ss_dssp             CTTCCEEECTTSCCCEECTTTTTTCTTCCEEECTTC-CCCEECTTTTTTCTTCCEEECTTCCC-CCCCTTSSTTCTTCCE
T ss_pred             CCCcCEEECCCCCcCEeChhhccCCccCcEEeCCCC-cccccCHHHhhchhhcCEeECCCCcc-cccChhhcCCcccCCE
Confidence            468889999988888777778888899999999884 67777777888888999999988874 4455777888889999


Q ss_pred             EecccccccccccccccCCCCccEEEccCCCCCChhhhhcccCCCCCCEEEecccccChhhhhhccCCC-----------
Q 012186          136 LDLERCTRIHGGLVNLKGLMKLESLNIKWCNCITDSDMKPLSGLTNLKSLQISCSKVTDSGIAYLKGLQ-----------  204 (469)
Q Consensus       136 L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~l~-----------  204 (469)
                      |++++|......+..+.++++|++|++++|.......+..++++++|++|++++|.++...+..+..++           
T Consensus       109 L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~lp~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~~l~~L~l  188 (606)
T 3vq2_A          109 LVAVETKLASLESFPIGQLITLKKLNVAHNFIHSCKLPAYFSNLTNLVHVDLSYNYIQTITVNDLQFLRENPQVNLSLDM  188 (606)
T ss_dssp             EECTTSCCCCSSSSCCTTCTTCCEEECCSSCCCCCCCCGGGGTCTTCCEEECCSSCCCEECTTTTHHHHHCTTCCCEEEC
T ss_pred             EEccCCccccccccccCCCCCCCEEeCCCCcccceechHhHhhcCCCCEEEccCCcceecChhhhhhhhccccccceeec
Confidence            999887544444466888888999998885533323467788888888888888877665443332222           


Q ss_pred             ----------------CCCeeeccCCCCch-hhHHh--------------------------------------------
Q 012186          205 ----------------KLTLLNLEGCPVTA-ACLDS--------------------------------------------  223 (469)
Q Consensus       205 ----------------~L~~L~l~~~~~~~-~~~~~--------------------------------------------  223 (469)
                                      +|+.|++++|.+.. ..+..                                            
T Consensus       189 ~~n~l~~~~~~~~~~~~L~~L~L~~n~~~~~~~~~~~~~l~~L~~l~l~~~~~~~~~~l~~~~~~~~~~l~~l~l~~l~l  268 (606)
T 3vq2_A          189 SLNPIDFIQDQAFQGIKLHELTLRGNFNSSNIMKTCLQNLAGLHVHRLILGEFKDERNLEIFEPSIMEGLCDVTIDEFRL  268 (606)
T ss_dssp             TTCCCCEECTTTTTTCEEEEEEEESCCSCHHHHHHHHHTTTTCEEEEEEEECCTTSCCCSCCCGGGGTTGGGSEEEEEEE
T ss_pred             cCCCcceeCcccccCceeeeeeccCCccchhHHHHHhccccccccccccccccccCCcccccChHHhhhhhhccHhheec
Confidence                            34445554443321 11111                                            


Q ss_pred             ----------------------------------hhcCCCCcEEECCCCCCChhHHH--------------------Hhh
Q 012186          224 ----------------------------------LSALGSLFYLNLNRCQLSDDGCE--------------------KFS  249 (469)
Q Consensus       224 ----------------------------------~~~~~~L~~L~l~~~~~~~~~~~--------------------~~~  249 (469)
                                                        +..+++|+.|++.+|.+.. .+.                    .+.
T Consensus       269 ~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~l~~l~~~~~L~~L~l~~n~l~~-lp~~~l~~L~~L~l~~n~~~~~~~~~  347 (606)
T 3vq2_A          269 TYTNDFSDDIVKFHCLANVSAMSLAGVSIKYLEDVPKHFKWQSLSIIRCQLKQ-FPTLDLPFLKSLTLTMNKGSISFKKV  347 (606)
T ss_dssp             CCCTTCCGGGGSCGGGTTCSEEEEESCCCCCCCCCCTTCCCSEEEEESCCCSS-CCCCCCSSCCEEEEESCSSCEECCCC
T ss_pred             cccccccccccccccCCCCCEEEecCccchhhhhccccccCCEEEcccccCcc-cccCCCCccceeeccCCcCccchhhc
Confidence                                              1122334444444443311 110                    112


Q ss_pred             cCCCccEEEccCCCCchH--HHHHhhCCCCCCEEecCCCCCChHHHHHhhCCCCCCEEeccCCCCChhhH-HHhhCCCCC
Q 012186          250 KIGSLKVLNLGFNEITDE--CLVHLKGLTNLESLNLDSCGIGDEGLVNLTGLCNLKCLELSDTQVGSSGL-RHLSGLTNL  326 (469)
Q Consensus       250 ~~~~L~~L~l~~~~~~~~--~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~-~~~~~~~~L  326 (469)
                      .+++|+.|++++|.+.+.  .+..+..+++|+.|++++|.+.... ..+..+++|+.|++++|.+....+ ..+..+++|
T Consensus       348 ~l~~L~~L~ls~n~l~~~~~~~~~~~~~~~L~~L~L~~n~l~~~~-~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L  426 (606)
T 3vq2_A          348 ALPSLSYLDLSRNALSFSGCCSYSDLGTNSLRHLDLSFNGAIIMS-ANFMGLEELQHLDFQHSTLKRVTEFSAFLSLEKL  426 (606)
T ss_dssp             CCTTCCEEECCSSCEEEEEECCHHHHCCSCCCEEECCSCSEEEEC-CCCTTCTTCCEEECTTSEEESTTTTTTTTTCTTC
T ss_pred             cCCCCCEEECcCCccCCCcchhhhhccCCcccEeECCCCccccch-hhccCCCCCCeeECCCCccCCccChhhhhccccC
Confidence            334444444444444332  1334455555555555555443322 344555666666666665544433 345566777


Q ss_pred             cEEecccCCCCchHHHhhhCCCCCcEEEccCCCCCHH-HHHHHhcCCCCCEeecCCCCCChhHHHHhHcCCCCCeeeeCC
Q 012186          327 ESINLSFTGISDGSLRKLAGLSSLKSLNLDARQITDT-GLAALTSLTGLTHLDLFGARITDSGAAYLRNFKNLRSLEICG  405 (469)
Q Consensus       327 ~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~-~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~  405 (469)
                      +.|++++|.+....+..+..+++|+.|++++|.+++. .+..+..+++|++|++++|.+++..+..+..+++|+.|++++
T Consensus       427 ~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~  506 (606)
T 3vq2_A          427 LYLDISYTNTKIDFDGIFLGLTSLNTLKMAGNSFKDNTLSNVFANTTNLTFLDLSKCQLEQISWGVFDTLHRLQLLNMSH  506 (606)
T ss_dssp             CEEECTTSCCEECCTTTTTTCTTCCEEECTTCEEGGGEECSCCTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCS
T ss_pred             CEEECcCCCCCccchhhhcCCCCCCEEECCCCcCCCcchHHhhccCCCCCEEECCCCcCCccChhhhcccccCCEEECCC
Confidence            7777777766665556666677777777777766652 344556677777777777777776666677777777777777


Q ss_pred             CCCCHHHHHHHhcCCCCCeeeccCCCCCChhHHHHHHhCc-ccccccccCCCCC
Q 012186          406 GGLTDAGVKHIKDLSSLTLLNLSQNCNLTDKTLELISGLT-GLVSLNVSNSRIT  458 (469)
Q Consensus       406 ~~~~~~~~~~l~~~~~L~~L~l~~~~~l~~~~~~~l~~l~-~L~~L~l~~~~~~  458 (469)
                      |++++..|..+..+++|++|++++| .++..+.. +..++ +|+.|++++|++.
T Consensus       507 N~l~~~~~~~~~~l~~L~~L~l~~N-~l~~~p~~-~~~l~~~L~~l~l~~N~~~  558 (606)
T 3vq2_A          507 NNLLFLDSSHYNQLYSLSTLDCSFN-RIETSKGI-LQHFPKSLAFFNLTNNSVA  558 (606)
T ss_dssp             SCCSCEEGGGTTTCTTCCEEECTTS-CCCCEESC-GGGSCTTCCEEECCSCCCC
T ss_pred             CcCCCcCHHHccCCCcCCEEECCCC-cCcccCHh-HhhhcccCcEEEccCCCcc
Confidence            7777766667777777777777777 56643333 66665 4777777777654

>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A*

Probab=100.00  E-value=1.9e-38  Score=312.72  Aligned_cols=391  Identities=21%  Similarity=0.191  Sum_probs=283.8

Q ss_pred             CCCccEEEecCCCCChHhhHhhhcCCCCCEEecCCCcccChhHhHhhhCCCCCCEEeCCCCCcCcHHHHHHHhCCCCCCE
Q 012186           56 GSSLLSVDLSGSDVTDSGLIHLKDCSNLQSLDFNFCIQISDGGLEHLRGLSNLTSLSFRRNNAITAQGMKAFAGLINLVK  135 (469)
Q Consensus        56 ~~~l~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~  135 (469)
                      ++++++|+++++.+++..+..+.++++|++|++++| .++...+..|.++++|++|++++|.+ ....+..++.+++|++
T Consensus        25 ~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n-~i~~~~~~~~~~l~~L~~L~Ls~n~l-~~~~~~~~~~l~~L~~  102 (549)
T 2z81_A           25 TAAMKSLDLSFNKITYIGHGDLRACANLQVLILKSS-RINTIEGDAFYSLGSLEHLDLSDNHL-SSLSSSWFGPLSSLKY  102 (549)
T ss_dssp             CTTCCEEECCSSCCCEECSSTTSSCTTCCEEECTTS-CCCEECTTTTTTCTTCCEEECTTSCC-CSCCHHHHTTCTTCCE
T ss_pred             CCCccEEECcCCccCccChhhhhcCCcccEEECCCC-CcCccChhhccccccCCEEECCCCcc-CccCHHHhccCCCCcE
Confidence            368999999999998877888899999999999984 67777778899999999999999874 5556677899999999


Q ss_pred             Eecccccccc-cccccccCCCCccEEEccCCCCCChhhhhcccCCCCCCEEEecccccChhhhhhccCCCCCCeeeccCC
Q 012186          136 LDLERCTRIH-GGLVNLKGLMKLESLNIKWCNCITDSDMKPLSGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGC  214 (469)
Q Consensus       136 L~l~~~~~~~-~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~  214 (469)
                      |++++|.... ..+..+.++++|++|+++++..........+..+++|++|++++|.++...+..+..+++|++|+++++
T Consensus       103 L~Ls~n~l~~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~l~~n  182 (549)
T 2z81_A          103 LNLMGNPYQTLGVTSLFPNLTNLQTLRIGNVETFSEIRRIDFAGLTSLNELEIKALSLRNYQSQSLKSIRDIHHLTLHLS  182 (549)
T ss_dssp             EECTTCCCSSSCSSCSCTTCTTCCEEEEEESSSCCEECTTTTTTCCEEEEEEEEETTCCEECTTTTTTCSEEEEEEEECS
T ss_pred             EECCCCcccccchhhhhhccCCccEEECCCCccccccCHhhhhcccccCeeeccCCcccccChhhhhccccCceEecccC
Confidence            9999985433 234678889999999999876566555567888999999999998888777777777777888887777


Q ss_pred             CCchhhHHhhhcCCCCcEEECCCCCCChh---------------------------HHHH----hhc-------------
Q 012186          215 PVTAACLDSLSALGSLFYLNLNRCQLSDD---------------------------GCEK----FSK-------------  250 (469)
Q Consensus       215 ~~~~~~~~~~~~~~~L~~L~l~~~~~~~~---------------------------~~~~----~~~-------------  250 (469)
                      .+.......+..+++|++|++++|.+...                           .+..    +..             
T Consensus       183 ~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~l~~~~~~~~~L~~l~l~~~~  262 (549)
T 2z81_A          183 ESAFLLEIFADILSSVRYLELRDTNLARFQFSPLPVDEVSSPMKKLAFRGSVLTDESFNELLKLLRYILELSEVEFDDCT  262 (549)
T ss_dssp             BSTTHHHHHHHSTTTBSEEEEESCBCTTCCCCCCSSCCCCCCCCEEEEESCEEEHHHHHHHHGGGGGCTTCCEEEEESCE
T ss_pred             cccccchhhHhhcccccEEEccCCccccccccccchhhhhhcccceeccccccchhHHHHHHHHhhhhcccccccccccc
Confidence            66554343445567777777777665431                           0000    011             


Q ss_pred             ----------------------------------------------CCCccEEEccCCCCchHHHHHhhCCCCCCEEecC
Q 012186          251 ----------------------------------------------IGSLKVLNLGFNEITDECLVHLKGLTNLESLNLD  284 (469)
Q Consensus       251 ----------------------------------------------~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~  284 (469)
                                                                    .++|+.|++++|.+.......+..+++|+.|+++
T Consensus       263 ~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~i~~~~~~~~l~~~~~~~~~L~~L~l~~n~l~~ip~~~~~~l~~L~~L~Ls  342 (549)
T 2z81_A          263 LNGLGDFNPSESDVVSELGKVETVTIRRLHIPQFYLFYDLSTVYSLLEKVKRITVENSKVFLVPCSFSQHLKSLEFLDLS  342 (549)
T ss_dssp             EECCSCCCCCTTTCCCCCTTCCEEEEESCBCSCGGGSCCCCHHHHHSTTCCEEEEESSCCCCCCHHHHHHCTTCCEEECC
T ss_pred             ccccccccccchhhhhhhcccccccccccccchhhhcccchhhhhhcccceEEEeccCccccCCHHHHhcCccccEEEcc
Confidence                                                          1234444444444432222223457777777777


Q ss_pred             CCCCChHHHHH---hhCCCCCCEEeccCCCCChhhH--HHhhCCCCCcEEecccCCCCchHHHhhhCCCCCcEEEccCCC
Q 012186          285 SCGIGDEGLVN---LTGLCNLKCLELSDTQVGSSGL--RHLSGLTNLESINLSFTGISDGSLRKLAGLSSLKSLNLDARQ  359 (469)
Q Consensus       285 ~~~~~~~~~~~---~~~~~~L~~L~l~~~~~~~~~~--~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~  359 (469)
                      +|.+.+..+..   ++.+++|+.|++++|.+.....  ..+..+++|+.|++++|.+.. .+..+..+++|+.|++++|.
T Consensus       343 ~N~l~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~~l~~L~~L~Ls~N~l~~-lp~~~~~~~~L~~L~Ls~N~  421 (549)
T 2z81_A          343 ENLMVEEYLKNSACKGAWPSLQTLVLSQNHLRSMQKTGEILLTLKNLTSLDISRNTFHP-MPDSCQWPEKMRFLNLSSTG  421 (549)
T ss_dssp             SSCCCHHHHHHHTCTTSSTTCCEEECTTSCCCCHHHHHHHGGGCTTCCEEECTTCCCCC-CCSCCCCCTTCCEEECTTSC
T ss_pred             CCccccccccchhhhhccccCcEEEccCCcccccccchhhhhcCCCCCEEECCCCCCcc-CChhhcccccccEEECCCCC
Confidence            77776654332   4567777788887777765432  446677778888887777663 33445566777888887777


Q ss_pred             CCHHHHHHHhcCCCCCEeecCCCCCChhHHHHhHcCCCCCeeeeCCCCCCHHHHHHHhcCCCCCeeeccCCCCCChhHHH
Q 012186          360 ITDTGLAALTSLTGLTHLDLFGARITDSGAAYLRNFKNLRSLEICGGGLTDAGVKHIKDLSSLTLLNLSQNCNLTDKTLE  439 (469)
Q Consensus       360 ~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~l~~~~~~  439 (469)
                      ++.... .  -.++|++|++++|++++..    ..+++|+.|++++|+++.. |. ...+++|++|++++| .++...++
T Consensus       422 l~~l~~-~--~~~~L~~L~Ls~N~l~~~~----~~l~~L~~L~Ls~N~l~~i-p~-~~~l~~L~~L~Ls~N-~l~~~~~~  491 (549)
T 2z81_A          422 IRVVKT-C--IPQTLEVLDVSNNNLDSFS----LFLPRLQELYISRNKLKTL-PD-ASLFPVLLVMKISRN-QLKSVPDG  491 (549)
T ss_dssp             CSCCCT-T--SCTTCSEEECCSSCCSCCC----CCCTTCCEEECCSSCCSSC-CC-GGGCTTCCEEECCSS-CCCCCCTT
T ss_pred             cccccc-h--hcCCceEEECCCCChhhhc----ccCChhcEEECCCCccCcC-CC-cccCccCCEEecCCC-ccCCcCHH
Confidence            764321 1  1257888888888777642    4689999999999999854 43 457899999999999 88888888


Q ss_pred             HHHhCcccccccccCCCCCH
Q 012186          440 LISGLTGLVSLNVSNSRITS  459 (469)
Q Consensus       440 ~l~~l~~L~~L~l~~~~~~~  459 (469)
                      .+..+++|+.|++++|++.-
T Consensus       492 ~~~~l~~L~~L~l~~N~~~~  511 (549)
T 2z81_A          492 IFDRLTSLQKIWLHTNPWDC  511 (549)
T ss_dssp             GGGGCTTCCEEECCSSCBCC
T ss_pred             HHhcCcccCEEEecCCCccC
Confidence            88999999999999999764

>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens}

Probab=100.00  E-value=1.5e-40  Score=329.31  Aligned_cols=398  Identities=21%  Similarity=0.208  Sum_probs=289.5

Q ss_pred             CCCccEEEecCCCCChHhhHhhhcCCCCCEEecCCCcccChhHhHhhhCCCCCCEEeCCCCCcCcHHHHHHHhCCCCCCE
Q 012186           56 GSSLLSVDLSGSDVTDSGLIHLKDCSNLQSLDFNFCIQISDGGLEHLRGLSNLTSLSFRRNNAITAQGMKAFAGLINLVK  135 (469)
Q Consensus        56 ~~~l~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~  135 (469)
                      ++++++|+++++.+++..+..|.++++|++|++++| .++...+..|.++++|++|++++|.+ ....+..|..+++|++
T Consensus        27 ~~~l~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n-~i~~i~~~~~~~l~~L~~L~L~~n~l-~~~~~~~~~~l~~L~~  104 (570)
T 2z63_A           27 PFSTKNLDLSFNPLRHLGSYSFFSFPELQVLDLSRC-EIQTIEDGAYQSLSHLSTLILTGNPI-QSLALGAFSGLSSLQK  104 (570)
T ss_dssp             CSSCCEEECCSCCCCEECTTTTTTCSSCCEEECTTC-CCCEECTTTTTTCTTCCEEECTTCCC-CEECTTTTTTCTTCCE
T ss_pred             cccccEEEccCCccCccChhHhhCCCCceEEECCCC-cCCccCcccccCchhCCEEeCcCCcC-CccCHhhhcCcccccc
Confidence            457899999998888877778889999999999885 57776677888899999999998873 4445577888999999


Q ss_pred             EecccccccccccccccCCCCccEEEccCCCCCChhhhhcccCCCCCCEEEecccccChhhhhhccCCCCC----Ceeec
Q 012186          136 LDLERCTRIHGGLVNLKGLMKLESLNIKWCNCITDSDMKPLSGLTNLKSLQISCSKVTDSGIAYLKGLQKL----TLLNL  211 (469)
Q Consensus       136 L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~l~~L----~~L~l  211 (469)
                      |++++|.........+..+++|++|+++++.......+..++++++|++|++++|.++......+..+++|    +.+++
T Consensus       105 L~L~~n~l~~l~~~~~~~l~~L~~L~L~~n~l~~~~lp~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~~~~~L~l  184 (570)
T 2z63_A          105 LVAVETNLASLENFPIGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQSIYCTDLRVLHQMPLLNLSLDL  184 (570)
T ss_dssp             EECTTSCCCCSTTCSCTTCTTCCEEECCSSCCCCCCCCGGGGGCTTCCEEECTTSCCCEECGGGGHHHHTCTTCCCEEEC
T ss_pred             ccccccccccCCCccccccccccEEecCCCccceecChhhhcccCCCCEEeCcCCccceecHHHccchhccchhhhhccc
Confidence            99988753333334588889999999988543322346678888899999998888876655556555555    66676


Q ss_pred             cCCCCchhhHH---------------------------------------------------------------------
Q 012186          212 EGCPVTAACLD---------------------------------------------------------------------  222 (469)
Q Consensus       212 ~~~~~~~~~~~---------------------------------------------------------------------  222 (469)
                      ++|.+....+.                                                                     
T Consensus       185 ~~n~l~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~l~~l~~~~l~~~~~~~~~~l~~~~~~~~~~l~~l~l~~l~l  264 (570)
T 2z63_A          185 SLNPMNFIQPGAFKEIRLHKLTLRNNFDSLNVMKTCIQGLAGLEVHRLVLGEFRNEGNLEKFDKSALEGLCNLTIEEFRL  264 (570)
T ss_dssp             TTCCCCEECTTTTTTCEEEEEEEESCCSCTTHHHHHHHTTTTCEEEEEEEEECCCCSSCEECCTTTTGGGGGSEEEEEEE
T ss_pred             CCCCceecCHHHhccCcceeEecccccccccchhhhhcCccccceeeeccccccCchhhhhcchhhhccccccchhhhhh
Confidence            66655433222                                                                     


Q ss_pred             ------------hhhcCCCCcEEECCCCCCChhHHHHhhcCCCccEEEccCCCCchHHHH-------------------H
Q 012186          223 ------------SLSALGSLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLV-------------------H  271 (469)
Q Consensus       223 ------------~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~-------------------~  271 (469)
                                  .+..+++|+.|++.++.+.. .+..+..+ +|+.|++++|.+......                   .
T Consensus       265 ~~~~~~~~~~~~~~~~l~~L~~L~l~~~~l~~-l~~~~~~~-~L~~L~l~~n~~~~l~~~~l~~L~~L~l~~n~~~~~~~  342 (570)
T 2z63_A          265 AYLDYYLDDIIDLFNCLTNVSSFSLVSVTIER-VKDFSYNF-GWQHLELVNCKFGQFPTLKLKSLKRLTFTSNKGGNAFS  342 (570)
T ss_dssp             EETTEEESCSTTTTGGGTTCSEEEEESCEECS-CCBCCSCC-CCSEEEEESCBCSSCCBCBCSSCCEEEEESCBSCCBCC
T ss_pred             hcchhhhhhchhhhcCcCcccEEEecCccchh-hhhhhccC-CccEEeeccCcccccCcccccccCEEeCcCCccccccc
Confidence                        23334556666665554432 22222333 444444444433311000                   0


Q ss_pred             hhCCCCCCEEecCCCCCChHH--HHHhhCCCCCCEEeccCCCCChhhHHHhhCCCCCcEEecccCCCCchHH-HhhhCCC
Q 012186          272 LKGLTNLESLNLDSCGIGDEG--LVNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISDGSL-RKLAGLS  348 (469)
Q Consensus       272 ~~~l~~L~~L~l~~~~~~~~~--~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~-~~~~~~~  348 (469)
                      ...+++|+.|++++|.+....  +..+..+++|++|++++|.+...... +..+++|+.|++++|.+....+ ..+..++
T Consensus       343 ~~~~~~L~~L~l~~n~l~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~-~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~  421 (570)
T 2z63_A          343 EVDLPSLEFLDLSRNGLSFKGCCSQSDFGTTSLKYLDLSFNGVITMSSN-FLGLEQLEHLDFQHSNLKQMSEFSVFLSLR  421 (570)
T ss_dssp             CCBCTTCCEEECCSSCCBEEEEEEHHHHTCSCCCEEECCSCSEEEEEEE-EETCTTCCEEECTTSEEESCTTSCTTTTCT
T ss_pred             cccCCCCCEEeCcCCccCccccccccccccCccCEEECCCCcccccccc-ccccCCCCEEEccCCccccccchhhhhcCC
Confidence            035677777777777765432  34566788888888888876654433 6788888888888887665443 4567889


Q ss_pred             CCcEEEccCCCCCHHHHHHHhcCCCCCEeecCCCCCC-hhHHHHhHcCCCCCeeeeCCCCCCHHHHHHHhcCCCCCeeec
Q 012186          349 SLKSLNLDARQITDTGLAALTSLTGLTHLDLFGARIT-DSGAAYLRNFKNLRSLEICGGGLTDAGVKHIKDLSSLTLLNL  427 (469)
Q Consensus       349 ~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~-~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l  427 (469)
                      +|+.|++++|.+....+..+..+++|++|++++|.++ +..|..+..+++|+.|++++|++++..|..+..+++|++|++
T Consensus       422 ~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~p~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l  501 (570)
T 2z63_A          422 NLIYLDISHTHTRVAFNGIFNGLSSLEVLKMAGNSFQENFLPDIFTELRNLTFLDLSQCQLEQLSPTAFNSLSSLQVLNM  501 (570)
T ss_dssp             TCCEEECTTSCCEECCTTTTTTCTTCCEEECTTCEEGGGEECSCCTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEEC
T ss_pred             CCCEEeCcCCcccccchhhhhcCCcCcEEECcCCcCccccchhhhhcccCCCEEECCCCccccCChhhhhcccCCCEEeC
Confidence            9999999999888776777888999999999999887 456777888999999999999999888888889999999999


Q ss_pred             cCCCCCChhHHHHHHhCcccccccccCCCCCH
Q 012186          428 SQNCNLTDKTLELISGLTGLVSLNVSNSRITS  459 (469)
Q Consensus       428 ~~~~~l~~~~~~~l~~l~~L~~L~l~~~~~~~  459 (469)
                      ++| .++...+..+..+++|+.|++++|+++.
T Consensus       502 ~~n-~l~~~~~~~~~~l~~L~~L~l~~N~~~~  532 (570)
T 2z63_A          502 ASN-QLKSVPDGIFDRLTSLQKIWLHTNPWDC  532 (570)
T ss_dssp             CSS-CCSCCCTTTTTTCTTCCEEECCSSCBCC
T ss_pred             CCC-cCCCCCHHHhhcccCCcEEEecCCcccC
Confidence            999 7888877788899999999999988763

>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron}

Probab=100.00  E-value=1.2e-40  Score=336.94  Aligned_cols=403  Identities=17%  Similarity=0.149  Sum_probs=320.8

Q ss_pred             HHHHHhcCCCccEEEecCCCCChHhhHhhhcCCCCCEEecCCCcccChh-------------------------------
Q 012186           49 MDVIASQGSSLLSVDLSGSDVTDSGLIHLKDCSNLQSLDFNFCIQISDG-------------------------------   97 (469)
Q Consensus        49 ~~~~~~~~~~l~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~-------------------------------   97 (469)
                      ..+.|....+++.|+|+++.+.+.+|..++++++|++|+++.++.+...                               
T Consensus       315 ~GV~C~~~~~V~~L~Ls~~~L~G~ip~~l~~L~~L~~LdLss~N~lsG~~~~~~~~~~~~l~~~~l~~lr~~~~~~~l~~  394 (876)
T 4ecn_A          315 PGVDLDNNGRVTGLSLAGFGAKGRVPDAIGQLTELKVLSFGTHSETVSGRLFGDEELTPDMSEERKHRIRMHYKKMFLDY  394 (876)
T ss_dssp             TTEEECTTSCEEEEECTTTCCEEEECGGGGGCTTCCEEESCCTTHHHHTTCBTTBCCCSSCCHHHHHHHHTHHHHHHTCC
T ss_pred             CceEecCCCCEEEEECccCCCCCcCchHHhccccceEeeecccccccccccccccccccccchhHHHHHHHhhhhhhhcc
Confidence            3444443478999999999999999999999999999999332322111                               


Q ss_pred             ---------------------------------------------HhHhhhCCCCCCEEeCCCCCcCcH-----------
Q 012186           98 ---------------------------------------------GLEHLRGLSNLTSLSFRRNNAITA-----------  121 (469)
Q Consensus        98 ---------------------------------------------~~~~l~~~~~L~~L~l~~~~~~~~-----------  121 (469)
                                                                   .|..++++++|++|++++|.+...           
T Consensus       395 ~~~~~~s~l~~~~l~~~~~~~~i~~~~~l~l~~l~l~~~~N~L~~IP~~l~~L~~L~~L~Ls~N~Lsg~~i~~~~~~~s~  474 (876)
T 4ecn_A          395 DQRLNLSDLLQDAINRNPEMKPIKKDSRISLKDTQIGNLTNRITFISKAIQRLTKLQIIYFANSPFTYDNIAVDWEDANS  474 (876)
T ss_dssp             CGGGGSCHHHHHHHHTCTTSCCCCCCCCCCCCTTTTTCCSCEEEEECGGGGGCTTCCEEEEESCCCCGGGBSSSCSCTTS
T ss_pred             CcchhhhHHHHHHhhhCccccccccccccchhhceeccccCcccchhHHHhcCCCCCEEECcCCcCCCCccccccccccc
Confidence                                                         456788999999999999985331           


Q ss_pred             -----HHHHHHh--CCCCCCEEecccccccccccccccCCCCccEEEccCCCCCCh-hhhhccc-------CCCCCCEEE
Q 012186          122 -----QGMKAFA--GLINLVKLDLERCTRIHGGLVNLKGLMKLESLNIKWCNCITD-SDMKPLS-------GLTNLKSLQ  186 (469)
Q Consensus       122 -----~~~~~~~--~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~-~~~~~~~-------~~~~L~~L~  186 (469)
                           .+|..++  ++++|++|++++|......|..+.++++|++|++++|..+.. ..+..+.       .+++|+.|+
T Consensus       475 n~~~g~iP~~l~f~~L~~L~~L~Ls~N~l~~~iP~~l~~L~~L~~L~Ls~N~~lsg~~iP~~i~~L~~~~~~l~~L~~L~  554 (876)
T 4ecn_A          475 DYAKQYENEELSWSNLKDLTDVELYNCPNMTQLPDFLYDLPELQSLNIACNRGISAAQLKADWTRLADDEDTGPKIQIFY  554 (876)
T ss_dssp             HHHHHHTTSCCCGGGCTTCCEEEEESCTTCCSCCGGGGGCSSCCEEECTTCTTSCHHHHHHHHHHHHHCTTTTTTCCEEE
T ss_pred             ccccccCChhhhhccCCCCCEEECcCCCCCccChHHHhCCCCCCEEECcCCCCcccccchHHHHhhhhcccccCCccEEE
Confidence                 3677766  999999999999877777788899999999999999664665 4554444       456999999


Q ss_pred             ecccccChhhhh--hccCCCCCCeeeccCCCCchhhHHhhhcCCCCcEEECCCCCCChhHHHHhhcCCC-ccEEEccCCC
Q 012186          187 ISCSKVTDSGIA--YLKGLQKLTLLNLEGCPVTAACLDSLSALGSLFYLNLNRCQLSDDGCEKFSKIGS-LKVLNLGFNE  263 (469)
Q Consensus       187 l~~~~~~~~~~~--~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~-L~~L~l~~~~  263 (469)
                      +++|.+. ..+.  .+..+++|+.|++++|.+.. .| .+..+++|+.|++++|.+. ..+..+..+++ |+.|++++|.
T Consensus       555 Ls~N~L~-~ip~~~~l~~L~~L~~L~Ls~N~l~~-lp-~~~~L~~L~~L~Ls~N~l~-~lp~~l~~l~~~L~~L~Ls~N~  630 (876)
T 4ecn_A          555 MGYNNLE-EFPASASLQKMVKLGLLDCVHNKVRH-LE-AFGTNVKLTDLKLDYNQIE-EIPEDFCAFTDQVEGLGFSHNK  630 (876)
T ss_dssp             CCSSCCC-BCCCHHHHTTCTTCCEEECTTSCCCB-CC-CCCTTSEESEEECCSSCCS-CCCTTSCEECTTCCEEECCSSC
T ss_pred             eeCCcCC-ccCChhhhhcCCCCCEEECCCCCccc-ch-hhcCCCcceEEECcCCccc-cchHHHhhccccCCEEECcCCC
Confidence            9999998 4444  78999999999999999884 35 8889999999999999988 56667888888 9999999999


Q ss_pred             CchHHHHHhhCCC--CCCEEecCCCCCChHHHH---Hhh--CCCCCCEEeccCCCCChhhHHHhhCCCCCcEEecccCCC
Q 012186          264 ITDECLVHLKGLT--NLESLNLDSCGIGDEGLV---NLT--GLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSFTGI  336 (469)
Q Consensus       264 ~~~~~~~~~~~l~--~L~~L~l~~~~~~~~~~~---~~~--~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~  336 (469)
                      +. ..+..+..++  +|+.|++++|.+.+..+.   .+.  .+++|+.|++++|.+.......+..+++|+.|++++|.+
T Consensus       631 L~-~lp~~~~~~~~~~L~~L~Ls~N~l~g~ip~l~~~l~~~~~~~L~~L~Ls~N~L~~lp~~~~~~l~~L~~L~Ls~N~L  709 (876)
T 4ecn_A          631 LK-YIPNIFNAKSVYVMGSVDFSYNKIGSEGRNISCSMDDYKGINASTVTLSYNEIQKFPTELFATGSPISTIILSNNLM  709 (876)
T ss_dssp             CC-SCCSCCCTTCSSCEEEEECCSSCTTTTSSSCSSCTTTCCCCCEEEEECCSSCCCSCCHHHHHTTCCCSEEECCSCCC
T ss_pred             CC-cCchhhhccccCCCCEEECcCCcCCCccccchhhhccccCCCcCEEEccCCcCCccCHHHHccCCCCCEEECCCCcC
Confidence            88 4455555444  499999999988653221   112  345899999999999876666667899999999999988


Q ss_pred             CchHHHhhh-------CCCCCcEEEccCCCCCHHHHHHHh--cCCCCCEeecCCCCCChhHHHHhHcCCCCCeeeeCC--
Q 012186          337 SDGSLRKLA-------GLSSLKSLNLDARQITDTGLAALT--SLTGLTHLDLFGARITDSGAAYLRNFKNLRSLEICG--  405 (469)
Q Consensus       337 ~~~~~~~~~-------~~~~L~~L~l~~~~~~~~~~~~l~--~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~--  405 (469)
                      .......+.       ++++|+.|++++|.++.. +..+.  .+++|+.|++++|.+++ +|..+..+++|+.|++++  
T Consensus       710 ~~ip~~~~~~~~~~l~nl~~L~~L~Ls~N~L~~l-p~~l~~~~l~~L~~L~Ls~N~L~~-lp~~l~~L~~L~~L~Ls~N~  787 (876)
T 4ecn_A          710 TSIPENSLKPKDGNYKNTYLLTTIDLRFNKLTSL-SDDFRATTLPYLSNMDVSYNCFSS-FPTQPLNSSQLKAFGIRHQR  787 (876)
T ss_dssp             SCCCTTSSSCTTSCCTTGGGCCEEECCSSCCCCC-CGGGSTTTCTTCCEEECCSSCCSS-CCCGGGGCTTCCEEECCCCB
T ss_pred             CccChHHhccccccccccCCccEEECCCCCCccc-hHHhhhccCCCcCEEEeCCCCCCc-cchhhhcCCCCCEEECCCCC
Confidence            754333332       223999999999999954 45555  89999999999999998 577888999999999976  


Q ss_pred             ----CCCCHHHHHHHhcCCCCCeeeccCCCCCChhHHHHHHhCcccccccccCCCCCHHHH
Q 012186          406 ----GGLTDAGVKHIKDLSSLTLLNLSQNCNLTDKTLELISGLTGLVSLNVSNSRITSAGL  462 (469)
Q Consensus       406 ----~~~~~~~~~~l~~~~~L~~L~l~~~~~l~~~~~~~l~~l~~L~~L~l~~~~~~~~~~  462 (469)
                          |.+.+..|..+..+++|+.|++++| .+.. +|..+  .++|+.|+|++|++.....
T Consensus       788 ~ls~N~l~~~ip~~l~~L~~L~~L~Ls~N-~L~~-Ip~~l--~~~L~~LdLs~N~l~~i~~  844 (876)
T 4ecn_A          788 DAEGNRILRQWPTGITTCPSLIQLQIGSN-DIRK-VDEKL--TPQLYILDIADNPNISIDV  844 (876)
T ss_dssp             CTTCCBCCCCCCTTGGGCSSCCEEECCSS-CCCB-CCSCC--CSSSCEEECCSCTTCEEEC
T ss_pred             CcccccccccChHHHhcCCCCCEEECCCC-CCCc-cCHhh--cCCCCEEECCCCCCCccCh
Confidence                7778888889999999999999999 6654 44333  3799999999999876543

>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A*

Probab=100.00  E-value=3.6e-39  Score=325.78  Aligned_cols=399  Identities=21%  Similarity=0.233  Sum_probs=198.0

Q ss_pred             CCCccEEEecCCCCChHhhHhhhcCCCCCEEecCCCcccChhHhHhhhCCCCCCEEeCCCCCcCcHHHHHHHhCCCCCCE
Q 012186           56 GSSLLSVDLSGSDVTDSGLIHLKDCSNLQSLDFNFCIQISDGGLEHLRGLSNLTSLSFRRNNAITAQGMKAFAGLINLVK  135 (469)
Q Consensus        56 ~~~l~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~  135 (469)
                      .+++++|+++++.+++..+..+.++++|++|++++| .++......|.++++|++|++++|.+ ....+..++++++|++
T Consensus        48 l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n-~l~~l~~~~~~~l~~L~~L~L~~n~l-~~~~~~~~~~l~~L~~  125 (680)
T 1ziw_A           48 YSQLTSLDVGFNTISKLEPELCQKLPMLKVLNLQHN-ELSQLSDKTFAFCTNLTELHLMSNSI-QKIKNNPFVKQKNLIT  125 (680)
T ss_dssp             GTTCSEEECCSSCCCCCCTTHHHHCTTCCEEECCSS-CCCCCCTTTTTTCTTCSEEECCSSCC-CCCCSCTTTTCTTCCE
T ss_pred             CCcCcEEECCCCccCccCHHHHhcccCcCEEECCCC-ccCccChhhhccCCCCCEEECCCCcc-CccChhHccccCCCCE
Confidence            345555555555555544555555555555555553 34433333455555555555555542 2222334555555555


Q ss_pred             EecccccccccccccccCCCCccEEEccCCCCCChhhhhcc--cCCCCCCEEEecccccChhhhhhccCC----------
Q 012186          136 LDLERCTRIHGGLVNLKGLMKLESLNIKWCNCITDSDMKPL--SGLTNLKSLQISCSKVTDSGIAYLKGL----------  203 (469)
Q Consensus       136 L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~--~~~~~L~~L~l~~~~~~~~~~~~l~~l----------  203 (469)
                      |++++|......+..+.++++|++|+++++. +....+..+  ..+++|+.|++++|.+....+..+..+          
T Consensus       126 L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~-l~~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~  204 (680)
T 1ziw_A          126 LDLSHNGLSSTKLGTQVQLENLQELLLSNNK-IQALKSEELDIFANSSLKKLELSSNQIKEFSPGCFHAIGRLFGLFLNN  204 (680)
T ss_dssp             EECCSSCCSCCCCCSSSCCTTCCEEECCSSC-CCCBCHHHHGGGTTCEESEEECTTCCCCCBCTTGGGGSSEECEEECTT
T ss_pred             EECCCCcccccCchhhcccccCCEEEccCCc-ccccCHHHhhccccccccEEECCCCcccccChhhhhhhhhhhhhhccc
Confidence            5555543333333444555555555555532 222222222  133555555555555444333333222          


Q ss_pred             -----------------CCCCeeeccCCCCchhhHHhhhcCC--CCcEEECCCCCCChhHHHHhhcCCCccEEEccCCCC
Q 012186          204 -----------------QKLTLLNLEGCPVTAACLDSLSALG--SLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEI  264 (469)
Q Consensus       204 -----------------~~L~~L~l~~~~~~~~~~~~~~~~~--~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~  264 (469)
                                       ++|+.|+++++.+....+..+..++  +|+.|++++|.+....+..+..+++|+.|++++|.+
T Consensus       205 ~~l~~~~~~~~~~~l~~~~L~~L~L~~n~l~~~~~~~~~~l~~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l  284 (680)
T 1ziw_A          205 VQLGPSLTEKLCLELANTSIRNLSLSNSQLSTTSNTTFLGLKWTNLTMLDLSYNNLNVVGNDSFAWLPQLEYFFLEYNNI  284 (680)
T ss_dssp             CCCHHHHHHHHHHHHTTSCCCEEECTTSCCCEECTTTTGGGGGSCCCEEECTTSCCCEECTTTTTTCTTCCEEECCSCCB
T ss_pred             cccChhhHHHHHHHhhhccccEEEccCCcccccChhHhhccCcCCCCEEECCCCCcCccCcccccCcccccEeeCCCCcc
Confidence                             3344444444444444344444443  377777777777666566677777888888887777


Q ss_pred             chHHHHHhhCCCCCCEEecCCCCCChH---------HHHHhhCCCCCCEEeccCCCCChhhHHHhhCCCCCcEEeccc--
Q 012186          265 TDECLVHLKGLTNLESLNLDSCGIGDE---------GLVNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSF--  333 (469)
Q Consensus       265 ~~~~~~~~~~l~~L~~L~l~~~~~~~~---------~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~--  333 (469)
                      .+..+..+..+++|+.|+++++.....         ....+..+++|++|++.+|.+....+..+..+++|++|++++  
T Consensus       285 ~~~~~~~~~~l~~L~~L~L~~~~~~~~~~~~~lp~i~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~  364 (680)
T 1ziw_A          285 QHLFSHSLHGLFNVRYLNLKRSFTKQSISLASLPKIDDFSFQWLKCLEHLNMEDNDIPGIKSNMFTGLINLKYLSLSNSF  364 (680)
T ss_dssp             SEECTTTTTTCTTCCEEECTTCBCCC------CCEECTTTTTTCTTCCEEECCSCCBCCCCTTTTTTCTTCCEEECTTCB
T ss_pred             CccChhhhcCCCCccEEeccchhhhcccccccccccChhhcccCCCCCEEECCCCccCCCChhHhccccCCcEEECCCCc
Confidence            655555555556666666554321110         001234455566666665555544444444444444444443  


Q ss_pred             --------------------------CCCCchHHHhhhCCCCCcEEEccCCCCCHHH-HHHHhcCCCCCEeecCCCCCCh
Q 012186          334 --------------------------TGISDGSLRKLAGLSSLKSLNLDARQITDTG-LAALTSLTGLTHLDLFGARITD  386 (469)
Q Consensus       334 --------------------------~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~-~~~l~~~~~L~~L~l~~~~~~~  386 (469)
                                                |.+....+..+..+++|+.|++++|.++... ...+..+++|++|++++|++.+
T Consensus       365 ~~~~~l~~~~f~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~~l~~L~~L~Ls~n~l~~  444 (680)
T 1ziw_A          365 TSLRTLTNETFVSLAHSPLHILNLTKNKISKIESDAFSWLGHLEVLDLGLNEIGQELTGQEWRGLENIFEIYLSYNKYLQ  444 (680)
T ss_dssp             SCCCEECTTTTGGGTTSCCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCEEECCSGGGTTCTTCCEEECCSCSEEE
T ss_pred             hhhhhcchhhhcccccCcCceEECCCCCCCeEChhhhhCCCCCCEEeCCCCcCccccCcccccCcccccEEecCCCCcce
Confidence                                      3333333344455556666666665554321 1334455555555555554443


Q ss_pred             hH--------------------------HHHhHcCCCCCeeeeCCCCCCHHHHHHHhcCCCCCeeeccCCCCCChhHH--
Q 012186          387 SG--------------------------AAYLRNFKNLRSLEICGGGLTDAGVKHIKDLSSLTLLNLSQNCNLTDKTL--  438 (469)
Q Consensus       387 ~~--------------------------~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~l~~~~~--  438 (469)
                      ..                          |..+..+++|+.|++++|.+++..+..+.++++|++|++++| .++....  
T Consensus       445 ~~~~~~~~~~~L~~L~l~~n~l~~~~~~p~~~~~l~~L~~L~Ls~N~l~~i~~~~~~~l~~L~~L~Ls~N-~l~~~~~~~  523 (680)
T 1ziw_A          445 LTRNSFALVPSLQRLMLRRVALKNVDSSPSPFQPLRNLTILDLSNNNIANINDDMLEGLEKLEILDLQHN-NLARLWKHA  523 (680)
T ss_dssp             CCTTTTTTCTTCCEEECTTSCCBCTTCSSCTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSS-CCGGGGSTT
T ss_pred             eChhhhhcCcccccchhccccccccccCCcccccCCCCCEEECCCCCCCcCChhhhccccccCEEeCCCC-Cccccchhh
Confidence            33                          333444455555555555555444444455555555555555 3433211  


Q ss_pred             ------HHHHhCcccccccccCCCCC
Q 012186          439 ------ELISGLTGLVSLNVSNSRIT  458 (469)
Q Consensus       439 ------~~l~~l~~L~~L~l~~~~~~  458 (469)
                            ..+.++++|+.|++++|+++
T Consensus       524 ~~~~~~~~~~~l~~L~~L~L~~N~l~  549 (680)
T 1ziw_A          524 NPGGPIYFLKGLSHLHILNLESNGFD  549 (680)
T ss_dssp             STTSCCCTTTTCTTCCEEECCSSCCC
T ss_pred             ccCCcchhhcCCCCCCEEECCCCCCC
Confidence                  11344555555555555554

>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens}

Probab=100.00  E-value=3.5e-40  Score=339.27  Aligned_cols=397  Identities=21%  Similarity=0.200  Sum_probs=241.6

Q ss_pred             cCCCccEEEecCCCCChHhhHhhhcCCCCCEEecCCCcccChhHhHhhhCCCCCCEEeCCCCCcCcHHHHHHHhCCCCCC
Q 012186           55 QGSSLLSVDLSGSDVTDSGLIHLKDCSNLQSLDFNFCIQISDGGLEHLRGLSNLTSLSFRRNNAITAQGMKAFAGLINLV  134 (469)
Q Consensus        55 ~~~~l~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~l~~L~  134 (469)
                      .++++++|++++|.+++..+..|.++++|++|++++|..+....+..|.++++|++|++++|.+ ....|..|..+++|+
T Consensus        22 lp~~l~~LdLs~N~i~~i~~~~~~~l~~L~~LdLs~n~~~~~i~~~~f~~L~~L~~L~Ls~N~l-~~~~p~~~~~l~~L~  100 (844)
T 3j0a_A           22 VLNTTERLLLSFNYIRTVTASSFPFLEQLQLLELGSQYTPLTIDKEAFRNLPNLRILDLGSSKI-YFLHPDAFQGLFHLF  100 (844)
T ss_dssp             SCTTCCEEEEESCCCCEECSSSCSSCCSCSEEEECTTCCCCEECTTTTSSCTTCCEEECTTCCC-CEECTTSSCSCSSCC
T ss_pred             CCCCcCEEECCCCcCCccChhHCcccccCeEEeCCCCCCccccCHHHhcCCCCCCEEECCCCcC-cccCHhHccCCcccC
Confidence            4578999999999999888888999999999999997555555678899999999999999874 455678899999999


Q ss_pred             EEeccccccccccccc--ccCCCCccEEEccCCCCCChhhhhcccCCCCCCEEEecccccChhhhhhccCC--CCCCeee
Q 012186          135 KLDLERCTRIHGGLVN--LKGLMKLESLNIKWCNCITDSDMKPLSGLTNLKSLQISCSKVTDSGIAYLKGL--QKLTLLN  210 (469)
Q Consensus       135 ~L~l~~~~~~~~~~~~--l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~l--~~L~~L~  210 (469)
                      +|++++|......+..  +.++++|++|++++|..........++++++|++|++++|.+.......+..+  ++|+.|+
T Consensus       101 ~L~Ls~n~l~~~~~~~~~~~~L~~L~~L~Ls~N~l~~~~~~~~~~~L~~L~~L~Ls~N~i~~~~~~~l~~l~~~~L~~L~  180 (844)
T 3j0a_A          101 ELRLYFCGLSDAVLKDGYFRNLKALTRLDLSKNQIRSLYLHPSFGKLNSLKSIDFSSNQIFLVCEHELEPLQGKTLSFFS  180 (844)
T ss_dssp             CEECTTCCCSSCCSTTCCCSSCSSCCEEEEESCCCCCCCCCGGGGTCSSCCEEEEESSCCCCCCSGGGHHHHHCSSCCCE
T ss_pred             EeeCcCCCCCcccccCccccccCCCCEEECCCCcccccccchhHhhCCCCCEEECCCCcCCeeCHHHcccccCCccceEE
Confidence            9999998544433433  88999999999999664443333578899999999999988766544444333  4444444


Q ss_pred             ccCCCCchhhHHhhhcC---------------------------------------------------------------
Q 012186          211 LEGCPVTAACLDSLSAL---------------------------------------------------------------  227 (469)
Q Consensus       211 l~~~~~~~~~~~~~~~~---------------------------------------------------------------  227 (469)
                      +++|.+....+..+..+                                                               
T Consensus       181 L~~n~l~~~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~~l~~~~l~~L~l~~~~~~~~~~~~~l~~~~~~~f  260 (844)
T 3j0a_A          181 LAANSLYSRVSVDWGKCMNPFRNMVLEILDVSGNGWTVDITGNFSNAISKSQAFSLILAHHIMGAGFGFHNIKDPDQNTF  260 (844)
T ss_dssp             ECCSBSCCCCCCCCCSSSCTTTTCCBSEEBCSSCCSSTTTTSGGGGTSCSCCBSEEECCSSCCBCSSSCSSSTTGGGTTT
T ss_pred             CCCCccccccccchhhcCCccccCceeEEecCCCcCchhHHHHHHhhcCcccccceecccccccccccccccCCCChhhh
Confidence            44443332222111111                                                               


Q ss_pred             -----CCCcEEECCCCCCChhHHHHhhcCCCccEEEccCCCCchHHHHHhhCCCCCCEEecCCCCCChHHHHHhhCCCCC
Q 012186          228 -----GSLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNLDSCGIGDEGLVNLTGLCNL  302 (469)
Q Consensus       228 -----~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~L  302 (469)
                           ++|+.|++++|.+....+..+..+++|+.|++++|.+....+..+..+++|+.|++++|.+....+..+..+++|
T Consensus       261 ~~l~~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L  340 (844)
T 3j0a_A          261 AGLARSSVRHLDLSHGFVFSLNSRVFETLKDLKVLNLAYNKINKIADEAFYGLDNLQVLNLSYNLLGELYSSNFYGLPKV  340 (844)
T ss_dssp             TTTTTSCCCEEECTTCCCCEECSCCSSSCCCCCEEEEESCCCCEECTTTTTTCSSCCEEEEESCCCSCCCSCSCSSCTTC
T ss_pred             hccccCCccEEECCCCcccccChhhhhcCCCCCEEECCCCcCCCCChHHhcCCCCCCEEECCCCCCCccCHHHhcCCCCC
Confidence                 455555665555554444455556666666666666655445555666666666666666554444455566666


Q ss_pred             CEEeccCCCCChhhHHHhhCCCCCcEEecccCCCCchHHHhhhCCCCCcEEEccCCCC--------------------CH
Q 012186          303 KCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISDGSLRKLAGLSSLKSLNLDARQI--------------------TD  362 (469)
Q Consensus       303 ~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~--------------------~~  362 (469)
                      +.|++++|.+....+..+..+++|+.|++++|.+....     .+++|+.|.+++|.+                    +.
T Consensus       341 ~~L~L~~N~i~~~~~~~~~~l~~L~~L~Ls~N~l~~i~-----~~~~L~~L~l~~N~l~~l~~~~~~l~~L~ls~N~l~~  415 (844)
T 3j0a_A          341 AYIDLQKNHIAIIQDQTFKFLEKLQTLDLRDNALTTIH-----FIPSIPDIFLSGNKLVTLPKINLTANLIHLSENRLEN  415 (844)
T ss_dssp             CEEECCSCCCCCCCSSCSCSCCCCCEEEEETCCSCCCS-----SCCSCSEEEEESCCCCCCCCCCTTCCEEECCSCCCCS
T ss_pred             CEEECCCCCCCccChhhhcCCCCCCEEECCCCCCCccc-----CCCCcchhccCCCCcccccccccccceeecccCcccc
Confidence            66666666655544445556666666666666554311     123333333333222                    22


Q ss_pred             H-HHHHHhcCCCCCEeecCCCCCChhHHH-HhHcCCCCCeeeeCCCCCCHH-----HHHHHhcCCCCCeeeccCCCCCCh
Q 012186          363 T-GLAALTSLTGLTHLDLFGARITDSGAA-YLRNFKNLRSLEICGGGLTDA-----GVKHIKDLSSLTLLNLSQNCNLTD  435 (469)
Q Consensus       363 ~-~~~~l~~~~~L~~L~l~~~~~~~~~~~-~~~~~~~L~~L~l~~~~~~~~-----~~~~l~~~~~L~~L~l~~~~~l~~  435 (469)
                      . ....+..+++|+.|++++|++++..+. .+..+++|+.|++++|.++..     .+..+.++++|+.|++++| .++.
T Consensus       416 l~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~~~~L~~L~Ls~N~l~~~~~~~~~~~~~~~l~~L~~L~Ls~N-~l~~  494 (844)
T 3j0a_A          416 LDILYFLLRVPHLQILILNQNRFSSCSGDQTPSENPSLEQLFLGENMLQLAWETELCWDVFEGLSHLQVLYLNHN-YLNS  494 (844)
T ss_dssp             STTHHHHTTCTTCCEEEEESCCCCCCCSSSSSCSCTTCCBCEEESCCCSSSCCSCCCSSCSSCBCCEECCCCCHH-HHTT
T ss_pred             CchhhhhhcCCccceeeCCCCcccccccccccccCCccccccCCCCccccccccccchhhhcCcccccEEECCCC-cccc
Confidence            1 122234566666666666665542211 122344555555555544321     1122344555555555555 4555


Q ss_pred             hHHHHHHhCcccccccccCCCCC
Q 012186          436 KTLELISGLTGLVSLNVSNSRIT  458 (469)
Q Consensus       436 ~~~~~l~~l~~L~~L~l~~~~~~  458 (469)
                      ..+..+.++++|+.|++++|+++
T Consensus       495 ~~~~~~~~l~~L~~L~Ls~N~l~  517 (844)
T 3j0a_A          495 LPPGVFSHLTALRGLSLNSNRLT  517 (844)
T ss_dssp             CCTTSSSSCCSCSEEEEESCCCS
T ss_pred             cChhHccchhhhheeECCCCCCC
Confidence            55555555556666666665554

>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A*

Probab=100.00  E-value=3.3e-38  Score=318.75  Aligned_cols=349  Identities=23%  Similarity=0.257  Sum_probs=252.4

Q ss_pred             CCEEeCCCCCcCcHHHHHHHhCCCCCCEEecccccccccccccccCCCCccEEEccCCCCC--------ChhhhhcccCC
Q 012186          108 LTSLSFRRNNAITAQGMKAFAGLINLVKLDLERCTRIHGGLVNLKGLMKLESLNIKWCNCI--------TDSDMKPLSGL  179 (469)
Q Consensus       108 L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~--------~~~~~~~~~~~  179 (469)
                      |++|++++|.+ ....+..++.+++|++|++++|......+..+..+++|++|++.++...        .......+..+
T Consensus       250 L~~L~Ls~n~l-~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~~~~~~~~~~~~lp~i~~~~~~~l  328 (680)
T 1ziw_A          250 LTMLDLSYNNL-NVVGNDSFAWLPQLEYFFLEYNNIQHLFSHSLHGLFNVRYLNLKRSFTKQSISLASLPKIDDFSFQWL  328 (680)
T ss_dssp             CCEEECTTSCC-CEECTTTTTTCTTCCEEECCSCCBSEECTTTTTTCTTCCEEECTTCBCCC------CCEECTTTTTTC
T ss_pred             CCEEECCCCCc-CccCcccccCcccccEeeCCCCccCccChhhhcCCCCccEEeccchhhhcccccccccccChhhcccC
Confidence            66666666542 3333445566666666666665443334445666666666666543211        11111245566


Q ss_pred             CCCCEEEecccccChhhhhhccCCCCCCeeeccCCCCc--hhhHHhhhc--CCCCcEEECCCCCCChhHHHHhhcCCCcc
Q 012186          180 TNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVT--AACLDSLSA--LGSLFYLNLNRCQLSDDGCEKFSKIGSLK  255 (469)
Q Consensus       180 ~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~--~~~~~~~~~--~~~L~~L~l~~~~~~~~~~~~~~~~~~L~  255 (469)
                      ++|++|++++|.+.......+..+++|++|++++|.+.  ......+..  .++|+.|++++|.+....+..+..+++|+
T Consensus       329 ~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~~~~~~l~~~~f~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~  408 (680)
T 1ziw_A          329 KCLEHLNMEDNDIPGIKSNMFTGLINLKYLSLSNSFTSLRTLTNETFVSLAHSPLHILNLTKNKISKIESDAFSWLGHLE  408 (680)
T ss_dssp             TTCCEEECCSCCBCCCCTTTTTTCTTCCEEECTTCBSCCCEECTTTTGGGTTSCCCEEECTTSCCCEECTTTTTTCTTCC
T ss_pred             CCCCEEECCCCccCCCChhHhccccCCcEEECCCCchhhhhcchhhhcccccCcCceEECCCCCCCeEChhhhhCCCCCC
Confidence            77777777777776666666677777777777776432  111122222  25777777777777776667778888888


Q ss_pred             EEEccCCCCchHHH-HHhhCCCCCCEEecCCCCCChHHHHHhhCCCCCCEEeccCCCCC--hhhHHHhhCCCCCcEEecc
Q 012186          256 VLNLGFNEITDECL-VHLKGLTNLESLNLDSCGIGDEGLVNLTGLCNLKCLELSDTQVG--SSGLRHLSGLTNLESINLS  332 (469)
Q Consensus       256 ~L~l~~~~~~~~~~-~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~--~~~~~~~~~~~~L~~L~l~  332 (469)
                      .|++++|.+.+..+ ..+..+++|+.|++++|.+....+..+..+++|+.|++.+|.+.  ...+..+..+++|+.|+++
T Consensus       409 ~L~L~~N~l~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~p~~~~~l~~L~~L~Ls  488 (680)
T 1ziw_A          409 VLDLGLNEIGQELTGQEWRGLENIFEIYLSYNKYLQLTRNSFALVPSLQRLMLRRVALKNVDSSPSPFQPLRNLTILDLS  488 (680)
T ss_dssp             EEECCSSCCEEECCSGGGTTCTTCCEEECCSCSEEECCTTTTTTCTTCCEEECTTSCCBCTTCSSCTTTTCTTCCEEECC
T ss_pred             EEeCCCCcCccccCcccccCcccccEEecCCCCcceeChhhhhcCcccccchhccccccccccCCcccccCCCCCEEECC
Confidence            88888888765333 46778888889998888776655666778889999999888654  2345567788999999999


Q ss_pred             cCCCCchHHHhhhCCCCCcEEEccCCCCCHHHHH--------HHhcCCCCCEeecCCCCCChhHHHHhHcCCCCCeeeeC
Q 012186          333 FTGISDGSLRKLAGLSSLKSLNLDARQITDTGLA--------ALTSLTGLTHLDLFGARITDSGAAYLRNFKNLRSLEIC  404 (469)
Q Consensus       333 ~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~--------~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~  404 (469)
                      +|.+....+..+..+++|+.|++++|.++.....        .+..+++|+.|++++|.++...+..+..+++|+.|+++
T Consensus       489 ~N~l~~i~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~~~~~~~~l~~L~~L~L~~N~l~~i~~~~~~~l~~L~~L~Ls  568 (680)
T 1ziw_A          489 NNNIANINDDMLEGLEKLEILDLQHNNLARLWKHANPGGPIYFLKGLSHLHILNLESNGFDEIPVEVFKDLFELKIIDLG  568 (680)
T ss_dssp             SSCCCCCCTTTTTTCTTCCEEECCSSCCGGGGSTTSTTSCCCTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECC
T ss_pred             CCCCCcCChhhhccccccCEEeCCCCCccccchhhccCCcchhhcCCCCCCEEECCCCCCCCCCHHHcccccCcceeECC
Confidence            9988887777788899999999999988765322        25678999999999999997766678899999999999


Q ss_pred             CCCCCHHHHHHHhcCCCCCeeeccCCCCCChhHHHHHH-hCcccccccccCCCCC
Q 012186          405 GGGLTDAGVKHIKDLSSLTLLNLSQNCNLTDKTLELIS-GLTGLVSLNVSNSRIT  458 (469)
Q Consensus       405 ~~~~~~~~~~~l~~~~~L~~L~l~~~~~l~~~~~~~l~-~l~~L~~L~l~~~~~~  458 (469)
                      +|+++...+..|..+++|+.|++++| .++...+..+. .+++|+.|++++|++.
T Consensus       569 ~N~l~~l~~~~~~~l~~L~~L~L~~N-~l~~~~~~~~~~~~~~L~~l~l~~N~~~  622 (680)
T 1ziw_A          569 LNNLNTLPASVFNNQVSLKSLNLQKN-LITSVEKKVFGPAFRNLTELDMRFNPFD  622 (680)
T ss_dssp             SSCCCCCCTTTTTTCTTCCEEECTTS-CCCBCCHHHHHHHHTTCSEEECTTCCCC
T ss_pred             CCCCCcCCHhHhCCCCCCCEEECCCC-cCCccChhHhcccccccCEEEccCCCcc
Confidence            99999887777788999999999999 88888888887 7899999999998764

>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A*

Probab=100.00  E-value=6.4e-39  Score=319.73  Aligned_cols=392  Identities=20%  Similarity=0.194  Sum_probs=278.0

Q ss_pred             ccEEEecCCCCChHhhHhhhcCCCCCEEecCCCcccChhHhHhhhCCCCCCEEeCCCCCcCcHHHHHHHhCCCCCCEEec
Q 012186           59 LLSVDLSGSDVTDSGLIHLKDCSNLQSLDFNFCIQISDGGLEHLRGLSNLTSLSFRRNNAITAQGMKAFAGLINLVKLDL  138 (469)
Q Consensus        59 l~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~l  138 (469)
                      -++++.++..++. +|..+.  +++++|++++ +.++...+..|.++++|++|++++|.+ ....|..|.++++|++|++
T Consensus        13 ~~~~~c~~~~l~~-ip~~~~--~~l~~L~Ls~-n~l~~~~~~~~~~l~~L~~L~Ls~n~l-~~i~~~~~~~l~~L~~L~L   87 (606)
T 3vq2_A           13 NITYQCMDQKLSK-VPDDIP--SSTKNIDLSF-NPLKILKSYSFSNFSELQWLDLSRCEI-ETIEDKAWHGLHHLSNLIL   87 (606)
T ss_dssp             TTEEECTTSCCSS-CCTTSC--TTCCEEECTT-SCCCEECTTTTTTCTTCCEEECTTCCC-CEECTTTTTTCTTCCEEEC
T ss_pred             CCceEccCCCccc-CCCCCC--CCcCEEECCC-CCcCEeChhhccCCccCcEEeCCCCcc-cccCHHHhhchhhcCEeEC
Confidence            4578888888874 454443  8999999999 468887778899999999999999974 4555778999999999999


Q ss_pred             ccccccccccccccCCCCccEEEccCCCCCChhhhhcccCCCCCCEEEecccccChh-hhhhccCCCCCCeeeccCCCCc
Q 012186          139 ERCTRIHGGLVNLKGLMKLESLNIKWCNCITDSDMKPLSGLTNLKSLQISCSKVTDS-GIAYLKGLQKLTLLNLEGCPVT  217 (469)
Q Consensus       139 ~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~-~~~~l~~l~~L~~L~l~~~~~~  217 (469)
                      ++|......+..+.++++|++|++++|. +....+..++.+++|++|++++|.+... .+..+.++++|++|++++|.+.
T Consensus        88 s~n~l~~~~p~~~~~l~~L~~L~L~~n~-l~~~~~~~~~~l~~L~~L~L~~n~l~~~~lp~~~~~l~~L~~L~Ls~n~l~  166 (606)
T 3vq2_A           88 TGNPIQSFSPGSFSGLTSLENLVAVETK-LASLESFPIGQLITLKKLNVAHNFIHSCKLPAYFSNLTNLVHVDLSYNYIQ  166 (606)
T ss_dssp             TTCCCCCCCTTSSTTCTTCCEEECTTSC-CCCSSSSCCTTCTTCCEEECCSSCCCCCCCCGGGGTCTTCCEEECCSSCCC
T ss_pred             CCCcccccChhhcCCcccCCEEEccCCc-cccccccccCCCCCCCEEeCCCCcccceechHhHhhcCCCCEEEccCCcce
Confidence            9986555557889999999999999955 5555556789999999999999998763 4678899999999999999887


Q ss_pred             hhhHHhhhcCCCC----cEEECCCCCCChhHHHHh---------------------------------------------
Q 012186          218 AACLDSLSALGSL----FYLNLNRCQLSDDGCEKF---------------------------------------------  248 (469)
Q Consensus       218 ~~~~~~~~~~~~L----~~L~l~~~~~~~~~~~~~---------------------------------------------  248 (469)
                      ...+..+..+++|    ..+++++|.+.......+                                             
T Consensus       167 ~~~~~~~~~l~~L~~~l~~L~l~~n~l~~~~~~~~~~~~L~~L~L~~n~~~~~~~~~~~~~l~~L~~l~l~~~~~~~~~~  246 (606)
T 3vq2_A          167 TITVNDLQFLRENPQVNLSLDMSLNPIDFIQDQAFQGIKLHELTLRGNFNSSNIMKTCLQNLAGLHVHRLILGEFKDERN  246 (606)
T ss_dssp             EECTTTTHHHHHCTTCCCEEECTTCCCCEECTTTTTTCEEEEEEEESCCSCHHHHHHHHHTTTTCEEEEEEEECCTTSCC
T ss_pred             ecChhhhhhhhccccccceeeccCCCcceeCcccccCceeeeeeccCCccchhHHHHHhccccccccccccccccccCCc
Confidence            6544444333222    244444444332211111                                             


Q ss_pred             ---------------------------------------------------------hcCCCccEEEccCCCCchHHHH-
Q 012186          249 ---------------------------------------------------------SKIGSLKVLNLGFNEITDECLV-  270 (469)
Q Consensus       249 ---------------------------------------------------------~~~~~L~~L~l~~~~~~~~~~~-  270 (469)
                                                                               ..+++|+.|++++|.+. ..+. 
T Consensus       247 l~~~~~~~~~~l~~l~l~~l~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~l~~l~~~~~L~~L~l~~n~l~-~lp~~  325 (606)
T 3vq2_A          247 LEIFEPSIMEGLCDVTIDEFRLTYTNDFSDDIVKFHCLANVSAMSLAGVSIKYLEDVPKHFKWQSLSIIRCQLK-QFPTL  325 (606)
T ss_dssp             CSCCCGGGGTTGGGSEEEEEEECCCTTCCGGGGSCGGGTTCSEEEEESCCCCCCCCCCTTCCCSEEEEESCCCS-SCCCC
T ss_pred             ccccChHHhhhhhhccHhheeccccccccccccccccCCCCCEEEecCccchhhhhccccccCCEEEcccccCc-ccccC
Confidence                                                                     11123333333333321 1110 


Q ss_pred             -------------------HhhCCCCCCEEecCCCCCChHH--HHHhhCCCCCCEEeccCCCCChhhHHHhhCCCCCcEE
Q 012186          271 -------------------HLKGLTNLESLNLDSCGIGDEG--LVNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESI  329 (469)
Q Consensus       271 -------------------~~~~l~~L~~L~l~~~~~~~~~--~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L  329 (469)
                                         .+..+++|+.|++++|.+....  +..+..+++|+.|++++|.+.... ..+..+++|+.|
T Consensus       326 ~l~~L~~L~l~~n~~~~~~~~~~l~~L~~L~ls~n~l~~~~~~~~~~~~~~~L~~L~L~~n~l~~~~-~~~~~l~~L~~L  404 (606)
T 3vq2_A          326 DLPFLKSLTLTMNKGSISFKKVALPSLSYLDLSRNALSFSGCCSYSDLGTNSLRHLDLSFNGAIIMS-ANFMGLEELQHL  404 (606)
T ss_dssp             CCSSCCEEEEESCSSCEECCCCCCTTCCEEECCSSCEEEEEECCHHHHCCSCCCEEECCSCSEEEEC-CCCTTCTTCCEE
T ss_pred             CCCccceeeccCCcCccchhhccCCCCCEEECcCCccCCCcchhhhhccCCcccEeECCCCccccch-hhccCCCCCCee
Confidence                               1122344444444444433221  334455566666666666544322 345566777777


Q ss_pred             ecccCCCCchHH-HhhhCCCCCcEEEccCCCCCHHHHHHHhcCCCCCEeecCCCCCCh-hHHHHhHcCCCCCeeeeCCCC
Q 012186          330 NLSFTGISDGSL-RKLAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLFGARITD-SGAAYLRNFKNLRSLEICGGG  407 (469)
Q Consensus       330 ~l~~~~~~~~~~-~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~-~~~~~~~~~~~L~~L~l~~~~  407 (469)
                      ++++|.+....+ ..+..+++|+.|++++|.++...+..+..+++|++|++++|.+++ ..+..+..+++|+.|++++|.
T Consensus       405 ~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~Ls~n~  484 (606)
T 3vq2_A          405 DFQHSTLKRVTEFSAFLSLEKLLYLDISYTNTKIDFDGIFLGLTSLNTLKMAGNSFKDNTLSNVFANTTNLTFLDLSKCQ  484 (606)
T ss_dssp             ECTTSEEESTTTTTTTTTCTTCCEEECTTSCCEECCTTTTTTCTTCCEEECTTCEEGGGEECSCCTTCTTCCEEECTTSC
T ss_pred             ECCCCccCCccChhhhhccccCCEEECcCCCCCccchhhhcCCCCCCEEECCCCcCCCcchHHhhccCCCCCEEECCCCc
Confidence            777776655544 466777888888888888877666677788888888888888877 356777888999999999999


Q ss_pred             CCHHHHHHHhcCCCCCeeeccCCCCCChhHHHHHHhCcccccccccCCCCCH
Q 012186          408 LTDAGVKHIKDLSSLTLLNLSQNCNLTDKTLELISGLTGLVSLNVSNSRITS  459 (469)
Q Consensus       408 ~~~~~~~~l~~~~~L~~L~l~~~~~l~~~~~~~l~~l~~L~~L~l~~~~~~~  459 (469)
                      +++..|..+..+++|++|++++| .++...|..+..+++|+.|++++|+++.
T Consensus       485 l~~~~~~~~~~l~~L~~L~Ls~N-~l~~~~~~~~~~l~~L~~L~l~~N~l~~  535 (606)
T 3vq2_A          485 LEQISWGVFDTLHRLQLLNMSHN-NLLFLDSSHYNQLYSLSTLDCSFNRIET  535 (606)
T ss_dssp             CCEECTTTTTTCTTCCEEECCSS-CCSCEEGGGTTTCTTCCEEECTTSCCCC
T ss_pred             CCccChhhhcccccCCEEECCCC-cCCCcCHHHccCCCcCCEEECCCCcCcc
Confidence            88887888888899999999999 7888878888889999999999998874

>2z7x_B TOLL-like receptor 1, variable lymphocyte recepto; TLR2, TLR1, lipopeptide, innate immunity, glycoPro immune response, inflammatory response, leucine-rich repeat membrane, receptor; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens}

Probab=100.00  E-value=5e-38  Score=307.36  Aligned_cols=387  Identities=14%  Similarity=0.143  Sum_probs=277.5

Q ss_pred             CCccEEEecCCCCChHhhHhhhcCCCCCEEecCCCcccChhHhHhhhCCCCCCEEeCCCCCcCcHHHHHHHhCCCCCCEE
Q 012186           57 SSLLSVDLSGSDVTDSGLIHLKDCSNLQSLDFNFCIQISDGGLEHLRGLSNLTSLSFRRNNAITAQGMKAFAGLINLVKL  136 (469)
Q Consensus        57 ~~l~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L  136 (469)
                      +++++|+++++.+++..+..+.++++|++|++++| .++...+..|.++++|++|++++|.+.  .+|..  .+++|++|
T Consensus        21 ~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n-~l~~~~~~~~~~l~~L~~L~Ls~N~l~--~lp~~--~l~~L~~L   95 (520)
T 2z7x_B           21 QKTTILNISQNYISELWTSDILSLSKLRILIISHN-RIQYLDISVFKFNQELEYLDLSHNKLV--KISCH--PTVNLKHL   95 (520)
T ss_dssp             TTCSEEECCSSCCCCCCHHHHTTCTTCCEEECCSS-CCCEEEGGGGTTCTTCCEEECCSSCCC--EEECC--CCCCCSEE
T ss_pred             ccccEEECCCCcccccChhhccccccccEEecCCC-ccCCcChHHhhcccCCCEEecCCCcee--ecCcc--ccCCccEE
Confidence            68899999988888877788888999999999884 677777788888999999999988753  23433  78889999


Q ss_pred             ecccccccc-cccccccCCCCccEEEccCCCCCChhhhhcccCCCCC--CEEEeccccc--Chhhhhhc-----------
Q 012186          137 DLERCTRIH-GGLVNLKGLMKLESLNIKWCNCITDSDMKPLSGLTNL--KSLQISCSKV--TDSGIAYL-----------  200 (469)
Q Consensus       137 ~l~~~~~~~-~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~L--~~L~l~~~~~--~~~~~~~l-----------  200 (469)
                      ++++|.... ..+..+..+++|++|+++++. +..   ..+..+++|  +.|++.+|.+  ....+..+           
T Consensus        96 ~L~~N~l~~~~~p~~~~~l~~L~~L~L~~n~-l~~---~~~~~l~~L~L~~L~l~~n~l~~~~~~~~~l~~l~~~~l~l~  171 (520)
T 2z7x_B           96 DLSFNAFDALPICKEFGNMSQLKFLGLSTTH-LEK---SSVLPIAHLNISKVLLVLGETYGEKEDPEGLQDFNTESLHIV  171 (520)
T ss_dssp             ECCSSCCSSCCCCGGGGGCTTCCEEEEEESS-CCG---GGGGGGTTSCEEEEEEEECTTTTSSCCTTTTTTCCEEEEEEE
T ss_pred             eccCCccccccchhhhccCCcceEEEecCcc-cch---hhccccccceeeEEEeecccccccccccccccccccceEEEE
Confidence            998875443 245678888899999998854 443   345556666  8888887766  33322222           


Q ss_pred             ---------------cCCCCCCeeeccCCC-------CchhhHHhhhcCCCCcEEECCCCCCChhHHHHh---hcCCCcc
Q 012186          201 ---------------KGLQKLTLLNLEGCP-------VTAACLDSLSALGSLFYLNLNRCQLSDDGCEKF---SKIGSLK  255 (469)
Q Consensus       201 ---------------~~l~~L~~L~l~~~~-------~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~---~~~~~L~  255 (469)
                                     ..+++|+.+++++|.       +.... ..+..+++|+.|++.++.+.......+   ...++|+
T Consensus       172 l~~n~~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~-~~l~~l~~L~~L~l~~~~l~~~~~~~~~~~~~~~~L~  250 (520)
T 2z7x_B          172 FPTNKEFHFILDVSVKTVANLELSNIKCVLEDNKCSYFLSIL-AKLQTNPKLSNLTLNNIETTWNSFIRILQLVWHTTVW  250 (520)
T ss_dssp             CCSSSCCCCCCCCCCTTCSEEEECCEEECCSTTTTHHHHHHH-HGGGGCTTCCEEEEEEEEEEHHHHHHHHHHHHTSSCS
T ss_pred             eccCcchhhhhhhhhhcccceeeccccccccccccceeecch-hhhccccchhhccccccccCHHHHHHHHHHhhhCccc
Confidence                           235566666666654       22222 245566666666666655544322211   1134555


Q ss_pred             EEEccCCCCchHHHHHh-----hCC--------------------------CCCCEEecCCCCCChHHHHHhhCCCCCCE
Q 012186          256 VLNLGFNEITDECLVHL-----KGL--------------------------TNLESLNLDSCGIGDEGLVNLTGLCNLKC  304 (469)
Q Consensus       256 ~L~l~~~~~~~~~~~~~-----~~l--------------------------~~L~~L~l~~~~~~~~~~~~~~~~~~L~~  304 (469)
                      .|++++|.+.+..+..+     ..+                          ++|+.|++++|.+....  ....+++|++
T Consensus       251 ~L~l~~n~l~~~~p~~~~~~~~~~l~~L~~l~l~~n~~~~p~~~~~~~~~~~~L~~L~l~~n~l~~~~--~~~~l~~L~~  328 (520)
T 2z7x_B          251 YFSISNVKLQGQLDFRDFDYSGTSLKALSIHQVVSDVFGFPQSYIYEIFSNMNIKNFTVSGTRMVHML--CPSKISPFLH  328 (520)
T ss_dssp             EEEEEEEEEESCCCCCCCCCCSCCCCEEEEEEEEECCCCSCTHHHHHHHHTCCCSEEEEESSCCCCCC--CCSSCCCCCE
T ss_pred             EEEeecccccCccccchhhcccccCceeEeccccccceecchhhhhcccccCceeEEEcCCCcccccc--chhhCCcccE
Confidence            55555555443222222     223                          34666666666543321  1257889999


Q ss_pred             EeccCCCCChhhHHHhhCCCCCcEEecccCCCCc--hHHHhhhCCCCCcEEEccCCCCCH-HHHHHHhcCCCCCEeecCC
Q 012186          305 LELSDTQVGSSGLRHLSGLTNLESINLSFTGISD--GSLRKLAGLSSLKSLNLDARQITD-TGLAALTSLTGLTHLDLFG  381 (469)
Q Consensus       305 L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~--~~~~~~~~~~~L~~L~l~~~~~~~-~~~~~l~~~~~L~~L~l~~  381 (469)
                      |++++|.+....+..++.+++|+.|++++|.+.+  ..+..+..+++|+.|++++|.++. .+...+..+++|++|++++
T Consensus       329 L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~l~~~~~~~~~l~~L~~L~Ls~N~l~~~l~~~~~~~l~~L~~L~Ls~  408 (520)
T 2z7x_B          329 LDFSNNLLTDTVFENCGHLTELETLILQMNQLKELSKIAEMTTQMKSLQQLDISQNSVSYDEKKGDCSWTKSLLSLNMSS  408 (520)
T ss_dssp             EECCSSCCCTTTTTTCCCCSSCCEEECCSSCCCBHHHHHHHHTTCTTCCEEECCSSCCBCCGGGCSCCCCTTCCEEECCS
T ss_pred             EEeECCccChhhhhhhccCCCCCEEEccCCccCccccchHHHhhCCCCCEEECCCCcCCcccccchhccCccCCEEECcC
Confidence            9999999888777788899999999999999987  445778899999999999999987 4444567889999999999


Q ss_pred             CCCChhHHHHhHcCCCCCeeeeCCCCCCHHHHHHHhcCCCCCeeeccCCCCCChhHHHHHHhCcccccccccCCCCCH
Q 012186          382 ARITDSGAAYLRNFKNLRSLEICGGGLTDAGVKHIKDLSSLTLLNLSQNCNLTDKTLELISGLTGLVSLNVSNSRITS  459 (469)
Q Consensus       382 ~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~l~~~~~~~l~~l~~L~~L~l~~~~~~~  459 (469)
                      |.+++..+..+.  ++|+.|++++|+++.. |..+..+++|++|++++| .++...+..+..+++|+.|++++|++.-
T Consensus       409 N~l~~~~~~~l~--~~L~~L~Ls~N~l~~i-p~~~~~l~~L~~L~L~~N-~l~~l~~~~~~~l~~L~~L~l~~N~~~c  482 (520)
T 2z7x_B          409 NILTDTIFRCLP--PRIKVLDLHSNKIKSI-PKQVVKLEALQELNVASN-QLKSVPDGIFDRLTSLQKIWLHTNPWDC  482 (520)
T ss_dssp             SCCCGGGGGSCC--TTCCEEECCSSCCCCC-CGGGGGCTTCCEEECCSS-CCCCCCTTTTTTCTTCCEEECCSSCBCC
T ss_pred             CCCCcchhhhhc--ccCCEEECCCCccccc-chhhhcCCCCCEEECCCC-cCCccCHHHhccCCcccEEECcCCCCcc
Confidence            999877665542  7999999999999854 666778999999999999 7887655558889999999999999864

>3v47_A TOLL-like receptor 5B and variable lymphocyte REC chimeric protein; innate immunity, leucine-rich repeat, innate immune receptor system; HET: NAG; 2.47A {Danio rerio} PDB: 3v44_A*

Probab=100.00  E-value=6.8e-37  Score=294.42  Aligned_cols=357  Identities=23%  Similarity=0.199  Sum_probs=199.5

Q ss_pred             CCccEEEecCCCCChHhhHhhhcCCCCCEEecCCCcccChhHhHhhhCCCCCCEEeCCCCCcCcHHHHHHHhCCCCCCEE
Q 012186           57 SSLLSVDLSGSDVTDSGLIHLKDCSNLQSLDFNFCIQISDGGLEHLRGLSNLTSLSFRRNNAITAQGMKAFAGLINLVKL  136 (469)
Q Consensus        57 ~~l~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L  136 (469)
                      +++++|+++++.+++..+..+.++++|++|++++|.......+..|.++++|++|++++|.+ ....|..++.+++|++|
T Consensus        30 ~~l~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~n~~~~~i~~~~~~~l~~L~~L~Ls~n~l-~~~~~~~~~~l~~L~~L  108 (455)
T 3v47_A           30 AHVNYVDLSLNSIAELNETSFSRLQDLQFLKVEQQTPGLVIRNNTFRGLSSLIILKLDYNQF-LQLETGAFNGLANLEVL  108 (455)
T ss_dssp             TTCCEEECCSSCCCEECTTTTSSCTTCCEEECCCCSTTCEECTTTTTTCTTCCEEECTTCTT-CEECTTTTTTCTTCCEE
T ss_pred             CccCEEEecCCccCcCChhHhccCccccEEECcCCcccceECcccccccccCCEEeCCCCcc-CccChhhccCcccCCEE
Confidence            45666666666665555555566666666666654221122344455555666666655542 23334445555555555


Q ss_pred             eccccccccccccc--ccCCCCccEEEccCCCCCChhhhhc-ccCCCCCCEEEecccccChhhhhhccCC--CCCCeeec
Q 012186          137 DLERCTRIHGGLVN--LKGLMKLESLNIKWCNCITDSDMKP-LSGLTNLKSLQISCSKVTDSGIAYLKGL--QKLTLLNL  211 (469)
Q Consensus       137 ~l~~~~~~~~~~~~--l~~l~~L~~L~l~~~~~~~~~~~~~-~~~~~~L~~L~l~~~~~~~~~~~~l~~l--~~L~~L~l  211 (469)
                      ++++|......+..  +..+++|++|++++|. +....+.. +..+++|++|++++|.+....+..+..+  .+|+.|++
T Consensus       109 ~L~~n~l~~~~~~~~~~~~l~~L~~L~L~~n~-l~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~~~L~~L~l  187 (455)
T 3v47_A          109 TLTQCNLDGAVLSGNFFKPLTSLEMLVLRDNN-IKKIQPASFFLNMRRFHVLDLTFNKVKSICEEDLLNFQGKHFTLLRL  187 (455)
T ss_dssp             ECTTSCCBTHHHHSSTTTTCTTCCEEECCSSB-CCSCCCCGGGGGCTTCCEEECTTCCBSCCCTTTSGGGTTCEEEEEEC
T ss_pred             eCCCCCCCccccCcccccCcccCCEEECCCCc-cCccCcccccCCCCcccEEeCCCCcccccChhhhhcccccccccccc
Confidence            55554322212222  4445555555555433 22222222 4444555555555554444333333322  34444444


Q ss_pred             cCCCCchhhHHhhhcCCCCcEEECCCCCCChhHHHHhhcCCCccEEEccCCCCchHHHHHhhC---CCCCCEEecCCCCC
Q 012186          212 EGCPVTAACLDSLSALGSLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKG---LTNLESLNLDSCGI  288 (469)
Q Consensus       212 ~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~---l~~L~~L~l~~~~~  288 (469)
                      +++.+....+..+.                ......+..+++|+.|++++|.+.+..+..+..   .++|+.|+++++..
T Consensus       188 ~~n~l~~~~~~~~~----------------~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~~~~~~~L~~L~l~~~~~  251 (455)
T 3v47_A          188 SSITLQDMNEYWLG----------------WEKCGNPFKNTSITTLDLSGNGFKESMAKRFFDAIAGTKIQSLILSNSYN  251 (455)
T ss_dssp             TTCBCTTCSTTCTT----------------HHHHCCTTTTCEEEEEECTTSCCCHHHHHHHHHHTTTCCEEEEECTTCTT
T ss_pred             ccCcccccchhhcc----------------ccccccccccceeeeEecCCCcccccchhhhhccccccceeeEeeccccc
Confidence            44433322111000                000011123355555566555555444443322   24555555555432


Q ss_pred             ChH----------HHHHhh--CCCCCCEEeccCCCCChhhHHHhhCCCCCcEEecccCCCCchHHHhhhCCCCCcEEEcc
Q 012186          289 GDE----------GLVNLT--GLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISDGSLRKLAGLSSLKSLNLD  356 (469)
Q Consensus       289 ~~~----------~~~~~~--~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~  356 (469)
                      ...          ....+.  ..++|+.|++++|.+....+..++.+++|+.|++++|.+.+..+..+..+++|+.|+++
T Consensus       252 ~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls  331 (455)
T 3v47_A          252 MGSSFGHTNFKDPDNFTFKGLEASGVKTCDLSKSKIFALLKSVFSHFTDLEQLTLAQNEINKIDDNAFWGLTHLLKLNLS  331 (455)
T ss_dssp             TSCCTTCCSSCCCCTTTTGGGTTSCCCEEECCSSCCCEECTTTTTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECC
T ss_pred             cccccchhhhccCcccccccccccCceEEEecCccccccchhhcccCCCCCEEECCCCcccccChhHhcCcccCCEEECC
Confidence            110          000111  23578888888887777666667778888888888887777666677777888888888


Q ss_pred             CCCCCHHHHHHHhcCCCCCEeecCCCCCChhHHHHhHcCCCCCeeeeCCCCCCHHHHHHHhcCCCCCeeeccCCC
Q 012186          357 ARQITDTGLAALTSLTGLTHLDLFGARITDSGAAYLRNFKNLRSLEICGGGLTDAGVKHIKDLSSLTLLNLSQNC  431 (469)
Q Consensus       357 ~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~  431 (469)
                      +|.++...+..+..+++|++|++++|.+++..+..+..+++|+.|++++|++++..+..+..+++|++|++++|+
T Consensus       332 ~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~  406 (455)
T 3v47_A          332 QNFLGSIDSRMFENLDKLEVLDLSYNHIRALGDQSFLGLPNLKELALDTNQLKSVPDGIFDRLTSLQKIWLHTNP  406 (455)
T ss_dssp             SSCCCEECGGGGTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSC
T ss_pred             CCccCCcChhHhcCcccCCEEECCCCcccccChhhccccccccEEECCCCccccCCHhHhccCCcccEEEccCCC
Confidence            887777666667777888888888888877777777777888888888888777665566777788888888873

>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens}

Probab=100.00  E-value=2.6e-38  Score=325.47  Aligned_cols=394  Identities=20%  Similarity=0.141  Sum_probs=258.7

Q ss_pred             cCCCccEEEecCCCCChHh-hHhhhcCCCCCEEecCCCcccChhHhHhhhCCCCCCEEeCCCCCcCcHHHHH--HHhCCC
Q 012186           55 QGSSLLSVDLSGSDVTDSG-LIHLKDCSNLQSLDFNFCIQISDGGLEHLRGLSNLTSLSFRRNNAITAQGMK--AFAGLI  131 (469)
Q Consensus        55 ~~~~l~~L~l~~~~~~~~~-~~~~~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~--~~~~l~  131 (469)
                      ..+++++|+++++.....+ +..|.++++|++|++++| .+....+..|.++++|++|++++|... ...+.  .+.+++
T Consensus        46 ~l~~L~~LdLs~n~~~~~i~~~~f~~L~~L~~L~Ls~N-~l~~~~p~~~~~l~~L~~L~Ls~n~l~-~~~~~~~~~~~L~  123 (844)
T 3j0a_A           46 FLEQLQLLELGSQYTPLTIDKEAFRNLPNLRILDLGSS-KIYFLHPDAFQGLFHLFELRLYFCGLS-DAVLKDGYFRNLK  123 (844)
T ss_dssp             SCCSCSEEEECTTCCCCEECTTTTSSCTTCCEEECTTC-CCCEECTTSSCSCSSCCCEECTTCCCS-SCCSTTCCCSSCS
T ss_pred             ccccCeEEeCCCCCCccccCHHHhcCCCCCCEEECCCC-cCcccCHhHccCCcccCEeeCcCCCCC-cccccCccccccC
Confidence            4567888888877544433 566778888888888774 566666777778888888888877642 22232  367778


Q ss_pred             CCCEEeccccccccccc-ccccCCCCccEEEccCCCCCChhhhh--------------------------cccCCC----
Q 012186          132 NLVKLDLERCTRIHGGL-VNLKGLMKLESLNIKWCNCITDSDMK--------------------------PLSGLT----  180 (469)
Q Consensus       132 ~L~~L~l~~~~~~~~~~-~~l~~l~~L~~L~l~~~~~~~~~~~~--------------------------~~~~~~----  180 (469)
                      +|++|++++|......+ ..+.++++|++|+++++. +....+.                          .+..++    
T Consensus       124 ~L~~L~Ls~N~l~~~~~~~~~~~L~~L~~L~Ls~N~-i~~~~~~~l~~l~~~~L~~L~L~~n~l~~~~~~~~~~~~~~~~  202 (844)
T 3j0a_A          124 ALTRLDLSKNQIRSLYLHPSFGKLNSLKSIDFSSNQ-IFLVCEHELEPLQGKTLSFFSLAANSLYSRVSVDWGKCMNPFR  202 (844)
T ss_dssp             SCCEEEEESCCCCCCCCCGGGGTCSSCCEEEEESSC-CCCCCSGGGHHHHHCSSCCCEECCSBSCCCCCCCCCSSSCTTT
T ss_pred             CCCEEECCCCcccccccchhHhhCCCCCEEECCCCc-CCeeCHHHcccccCCccceEECCCCccccccccchhhcCCccc
Confidence            88888887765433333 457778888888887743 2221111                          122222    


Q ss_pred             --CCCEEEecccccChhhhhhc------------------------------------cC--CCCCCeeeccCCCCchhh
Q 012186          181 --NLKSLQISCSKVTDSGIAYL------------------------------------KG--LQKLTLLNLEGCPVTAAC  220 (469)
Q Consensus       181 --~L~~L~l~~~~~~~~~~~~l------------------------------------~~--l~~L~~L~l~~~~~~~~~  220 (469)
                        .|+.|++++|.+....+..+                                    .+  .++|+.|++++|.+....
T Consensus       203 ~~~L~~L~Ls~n~l~~~~~~~~~~~l~~~~l~~L~l~~~~~~~~~~~~~l~~~~~~~f~~l~~~~L~~L~Ls~n~l~~~~  282 (844)
T 3j0a_A          203 NMVLEILDVSGNGWTVDITGNFSNAISKSQAFSLILAHHIMGAGFGFHNIKDPDQNTFAGLARSSVRHLDLSHGFVFSLN  282 (844)
T ss_dssp             TCCBSEEBCSSCCSSTTTTSGGGGTSCSCCBSEEECCSSCCBCSSSCSSSTTGGGTTTTTTTTSCCCEEECTTCCCCEEC
T ss_pred             cCceeEEecCCCcCchhHHHHHHhhcCcccccceecccccccccccccccCCCChhhhhccccCCccEEECCCCcccccC
Confidence              27788887775443222111                                    11  267999999999888776


Q ss_pred             HHhhhcCCCCcEEECCCCCCChhHHHHhhcCCCccEEEccCCCCchHHHHHhhCCCCCCEEecCCCCCChHHHHHhhCCC
Q 012186          221 LDSLSALGSLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNLDSCGIGDEGLVNLTGLC  300 (469)
Q Consensus       221 ~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~  300 (469)
                      +..+..+++|+.|++++|.+....+..+..+++|+.|++++|.+....+..+..+++|+.|++++|.+....+..+..++
T Consensus       283 ~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~i~~~~~~~~~~l~  362 (844)
T 3j0a_A          283 SRVFETLKDLKVLNLAYNKINKIADEAFYGLDNLQVLNLSYNLLGELYSSNFYGLPKVAYIDLQKNHIAIIQDQTFKFLE  362 (844)
T ss_dssp             SCCSSSCCCCCEEEEESCCCCEECTTTTTTCSSCCEEEEESCCCSCCCSCSCSSCTTCCEEECCSCCCCCCCSSCSCSCC
T ss_pred             hhhhhcCCCCCEEECCCCcCCCCChHHhcCCCCCCEEECCCCCCCccCHHHhcCCCCCCEEECCCCCCCccChhhhcCCC
Confidence            77888999999999999999887778899999999999999999876677888999999999999988776666688899


Q ss_pred             CCCEEeccCCCCChhhHHHhhCCCCCcEEecccCCCC--------------------ch-HHHhhhCCCCCcEEEccCCC
Q 012186          301 NLKCLELSDTQVGSSGLRHLSGLTNLESINLSFTGIS--------------------DG-SLRKLAGLSSLKSLNLDARQ  359 (469)
Q Consensus       301 ~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~--------------------~~-~~~~~~~~~~L~~L~l~~~~  359 (469)
                      +|+.|++++|.+...     ..+++|+.|.+++|.+.                    .. ....+..+++|+.|++++|.
T Consensus       363 ~L~~L~Ls~N~l~~i-----~~~~~L~~L~l~~N~l~~l~~~~~~l~~L~ls~N~l~~l~~~~~~~~l~~L~~L~Ls~N~  437 (844)
T 3j0a_A          363 KLQTLDLRDNALTTI-----HFIPSIPDIFLSGNKLVTLPKINLTANLIHLSENRLENLDILYFLLRVPHLQILILNQNR  437 (844)
T ss_dssp             CCCEEEEETCCSCCC-----SSCCSCSEEEEESCCCCCCCCCCTTCCEEECCSCCCCSSTTHHHHTTCTTCCEEEEESCC
T ss_pred             CCCEEECCCCCCCcc-----cCCCCcchhccCCCCcccccccccccceeecccCccccCchhhhhhcCCccceeeCCCCc
Confidence            999999999977642     22445555554444332                    21 12234467777777777777


Q ss_pred             CCHHHHH-HHhcCCCCCEeecCCCCCCh-----hHHHHhHcCCCCCeeeeCCCCCCHHHHHHHhcCCCCCeeeccCCCCC
Q 012186          360 ITDTGLA-ALTSLTGLTHLDLFGARITD-----SGAAYLRNFKNLRSLEICGGGLTDAGVKHIKDLSSLTLLNLSQNCNL  433 (469)
Q Consensus       360 ~~~~~~~-~l~~~~~L~~L~l~~~~~~~-----~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~l  433 (469)
                      ++..... .+..+++|+.|++++|.++.     ..+..+..+++|+.|++++|.+++..+..+..+++|+.|++++| .+
T Consensus       438 l~~~~~~~~~~~~~~L~~L~Ls~N~l~~~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N-~l  516 (844)
T 3j0a_A          438 FSSCSGDQTPSENPSLEQLFLGENMLQLAWETELCWDVFEGLSHLQVLYLNHNYLNSLPPGVFSHLTALRGLSLNSN-RL  516 (844)
T ss_dssp             CCCCCSSSSSCSCTTCCBCEEESCCCSSSCCSCCCSSCSSCBCCEECCCCCHHHHTTCCTTSSSSCCSCSEEEEESC-CC
T ss_pred             ccccccccccccCCccccccCCCCccccccccccchhhhcCcccccEEECCCCcccccChhHccchhhhheeECCCC-CC
Confidence            6643211 22345666666666666542     22233455566666666666666555555556666666666666 55


Q ss_pred             ChhHHHHHHhCcccccccccCCCCCH
Q 012186          434 TDKTLELISGLTGLVSLNVSNSRITS  459 (469)
Q Consensus       434 ~~~~~~~l~~l~~L~~L~l~~~~~~~  459 (469)
                      +...+..+.  ++|+.|++++|+++.
T Consensus       517 ~~l~~~~~~--~~L~~L~Ls~N~l~~  540 (844)
T 3j0a_A          517 TVLSHNDLP--ANLEILDISRNQLLA  540 (844)
T ss_dssp             SSCCCCCCC--SCCCEEEEEEECCCC
T ss_pred             CccChhhhh--ccccEEECCCCcCCC
Confidence            544433322  455555555555543

>1z7x_W Ribonuclease inhibitor; leucine-rich repeat, enzyme- inhibitor complex, structural genomics, protein structure initiative, PSI, CESG; HET: CIT; 1.95A {Homo sapiens} SCOP: c.10.1.1 PDB: 2q4g_W* 2bex_A 1a4y_A 2bnh_A 1dfj_I

Probab=100.00  E-value=2.1e-33  Score=270.67  Aligned_cols=372  Identities=24%  Similarity=0.314  Sum_probs=217.7

Q ss_pred             CCCccEEEecCCCCChHhhHh-hhcCCCCCEEecCCCcccChhH----hHhhhCCCCCCEEeCCCCCcCcHHHHHHH-hC
Q 012186           56 GSSLLSVDLSGSDVTDSGLIH-LKDCSNLQSLDFNFCIQISDGG----LEHLRGLSNLTSLSFRRNNAITAQGMKAF-AG  129 (469)
Q Consensus        56 ~~~l~~L~l~~~~~~~~~~~~-~~~~~~L~~L~l~~~~~~~~~~----~~~l~~~~~L~~L~l~~~~~~~~~~~~~~-~~  129 (469)
                      ++++++|+++++.+++..... +..+++|++|++++| .+++..    +..+..+++|++|++++|.+ ....+..+ ..
T Consensus         2 ~~~l~~L~Ls~~~l~~~~~~~~~~~~~~L~~L~L~~~-~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~l-~~~~~~~l~~~   79 (461)
T 1z7x_W            2 SLDIQSLDIQCEELSDARWAELLPLLQQCQVVRLDDC-GLTEARCKDISSALRVNPALAELNLRSNEL-GDVGVHCVLQG   79 (461)
T ss_dssp             CEEEEEEEEESCCCCHHHHHHHHHHHTTCSEEEEESS-CCCHHHHHHHHHHHHTCTTCCEEECTTCCC-HHHHHHHHHHT
T ss_pred             CccceehhhhhcccCchhHHHHHhhcCCccEEEccCC-CCCHHHHHHHHHHHHhCCCcCEEeCCCCcC-ChHHHHHHHHH
Confidence            457899999999998765544 788999999999986 466543    45567889999999999874 44444333 34


Q ss_pred             CC----CCCEEeccccccccc----ccccccCCCCccEEEccCCCCCChhhhhccc-----CCCCCCEEEecccccChhh
Q 012186          130 LI----NLVKLDLERCTRIHG----GLVNLKGLMKLESLNIKWCNCITDSDMKPLS-----GLTNLKSLQISCSKVTDSG  196 (469)
Q Consensus       130 l~----~L~~L~l~~~~~~~~----~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~-----~~~~L~~L~l~~~~~~~~~  196 (469)
                      ++    +|++|++++|.....    .+..+..+++|++|++++|. +.+..+..+.     ..++|++|++++|.++...
T Consensus        80 l~~~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~L~~L~Ls~n~-i~~~~~~~l~~~l~~~~~~L~~L~L~~n~l~~~~  158 (461)
T 1z7x_W           80 LQTPSCKIQKLSLQNCCLTGAGCGVLSSTLRTLPTLQELHLSDNL-LGDAGLQLLCEGLLDPQCRLEKLQLEYCSLSAAS  158 (461)
T ss_dssp             TCSTTCCCCEEECTTSCCBGGGHHHHHHHTTSCTTCCEEECCSSB-CHHHHHHHHHHHHTSTTCCCCEEECTTSCCBGGG
T ss_pred             HhhCCCceeEEEccCCCCCHHHHHHHHHHHccCCceeEEECCCCc-CchHHHHHHHHHHhcCCCcceEEECCCCCCCHHH
Confidence            55    688888888754432    24566777888888887754 4433333222     2456777777777666533


Q ss_pred             ----hhhccCCCCCCeeeccCCCCchhhHHhhh-----cCCCCcEEECCCCCCChhH----HHHhhcCCCccEEEccCCC
Q 012186          197 ----IAYLKGLQKLTLLNLEGCPVTAACLDSLS-----ALGSLFYLNLNRCQLSDDG----CEKFSKIGSLKVLNLGFNE  263 (469)
Q Consensus       197 ----~~~l~~l~~L~~L~l~~~~~~~~~~~~~~-----~~~~L~~L~l~~~~~~~~~----~~~~~~~~~L~~L~l~~~~  263 (469)
                          ...+..+++|++|++++|.+....+..+.     ..++|++|++++|.+....    +..+..+++|+.|++++|.
T Consensus       159 ~~~l~~~l~~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~  238 (461)
T 1z7x_W          159 CEPLASVLRAKPDFKELTVSNNDINEAGVRVLCQGLKDSPCQLEALKLESCGVTSDNCRDLCGIVASKASLRELALGSNK  238 (461)
T ss_dssp             HHHHHHHHHHCTTCCEEECCSSBCHHHHHHHHHHHHHHSCCCCCEEECTTSCCBTTHHHHHHHHHHHCTTCCEEECCSSB
T ss_pred             HHHHHHHHhhCCCCCEEECcCCCcchHHHHHHHHHHhcCCCCceEEEccCCCCcHHHHHHHHHHHHhCCCccEEeccCCc
Confidence                33445566777777777766554333332     2456777777766665532    3444556666666666666


Q ss_pred             CchHHHHH-----hhCCCCCCEEecCCCCCChHH----HHHhhCCCCCCEEeccCCCCChhhHHHhh-----CCCCCcEE
Q 012186          264 ITDECLVH-----LKGLTNLESLNLDSCGIGDEG----LVNLTGLCNLKCLELSDTQVGSSGLRHLS-----GLTNLESI  329 (469)
Q Consensus       264 ~~~~~~~~-----~~~l~~L~~L~l~~~~~~~~~----~~~~~~~~~L~~L~l~~~~~~~~~~~~~~-----~~~~L~~L  329 (469)
                      +.+.....     +..+++|++|++++|.++...    +..+..+++|++|++++|.+.......+.     ..++|+.|
T Consensus       239 l~~~~~~~l~~~~~~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~i~~~~~~~l~~~l~~~~~~L~~L  318 (461)
T 1z7x_W          239 LGDVGMAELCPGLLHPSSRLRTLWIWECGITAKGCGDLCRVLRAKESLKELSLAGNELGDEGARLLCETLLEPGCQLESL  318 (461)
T ss_dssp             CHHHHHHHHHHHHTSTTCCCCEEECTTSCCCHHHHHHHHHHHHHCTTCCEEECTTCCCHHHHHHHHHHHHTSTTCCCCEE
T ss_pred             CChHHHHHHHHHHhcCCCCceEEECcCCCCCHHHHHHHHHHHhhCCCcceEECCCCCCchHHHHHHHHHhccCCccceee
Confidence            55432211     224566666666666665542    23344456666666666655544433332     12466666


Q ss_pred             ecccCCCCchH----HHhhhCCCCCcEEEccCCCCCHHHHHHHhc-----CCCCCEeecCCCCCCh----hHHHHhHcCC
Q 012186          330 NLSFTGISDGS----LRKLAGLSSLKSLNLDARQITDTGLAALTS-----LTGLTHLDLFGARITD----SGAAYLRNFK  396 (469)
Q Consensus       330 ~l~~~~~~~~~----~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~-----~~~L~~L~l~~~~~~~----~~~~~~~~~~  396 (469)
                      ++++|.++...    +..+..+++|+.|++++|.++..++..+..     .++|++|++++|.+++    .++..+..++
T Consensus       319 ~L~~n~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~i~~~~~~~l~~~l~~~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~  398 (461)
T 1z7x_W          319 WVKSCSFTAACCSHFSSVLAQNRFLLELQISNNRLEDAGVRELCQGLGQPGSVLRVLWLADCDVSDSSCSSLAATLLANH  398 (461)
T ss_dssp             ECTTSCCBGGGHHHHHHHHHHCSSCCEEECCSSBCHHHHHHHHHHHHTSTTCCCCEEECTTSCCCHHHHHHHHHHHHHCC
T ss_pred             EcCCCCCchHHHHHHHHHHhhCCCccEEEccCCccccccHHHHHHHHcCCCCceEEEECCCCCCChhhHHHHHHHHHhCC
Confidence            66666555442    233344556666666665555544433332     4455555555555554    3444455555


Q ss_pred             CCCeeeeCCCCCCHHHHHHHhc-----CCCCCeeeccCC
Q 012186          397 NLRSLEICGGGLTDAGVKHIKD-----LSSLTLLNLSQN  430 (469)
Q Consensus       397 ~L~~L~l~~~~~~~~~~~~l~~-----~~~L~~L~l~~~  430 (469)
                      +|+.|++++|.+++.....+..     ..+|+.|.+.++
T Consensus       399 ~L~~L~l~~N~i~~~~~~~l~~~l~~~~~~L~~L~~~~~  437 (461)
T 1z7x_W          399 SLRELDLSNNCLGDAGILQLVESVRQPGCLLEQLVLYDI  437 (461)
T ss_dssp             CCCEEECCSSSCCHHHHHHHHHHHTSTTCCCCEEECTTC
T ss_pred             CccEEECCCCCCCHHHHHHHHHHhccCCcchhheeeccc
Confidence            5555555555555544333321     224555555555

>1z7x_W Ribonuclease inhibitor; leucine-rich repeat, enzyme- inhibitor complex, structural genomics, protein structure initiative, PSI, CESG; HET: CIT; 1.95A {Homo sapiens} SCOP: c.10.1.1 PDB: 2q4g_W* 2bex_A 1a4y_A 2bnh_A 1dfj_I

Probab=100.00  E-value=6.6e-34  Score=274.14  Aligned_cols=379  Identities=23%  Similarity=0.240  Sum_probs=294.7

Q ss_pred             CCCCEEecCCCcccChhHhHh-hhCCCCCCEEeCCCCCcCcH---HHHHHHhCCCCCCEEecccccccccccccc-cCCC
Q 012186           81 SNLQSLDFNFCIQISDGGLEH-LRGLSNLTSLSFRRNNAITA---QGMKAFAGLINLVKLDLERCTRIHGGLVNL-KGLM  155 (469)
Q Consensus        81 ~~L~~L~l~~~~~~~~~~~~~-l~~~~~L~~L~l~~~~~~~~---~~~~~~~~l~~L~~L~l~~~~~~~~~~~~l-~~l~  155 (469)
                      ++|++|+++++ .+++..... +..+++|++|++++|.+...   ..+..+..+++|++|++++|......+..+ ..++
T Consensus         3 ~~l~~L~Ls~~-~l~~~~~~~~~~~~~~L~~L~L~~~~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~   81 (461)
T 1z7x_W            3 LDIQSLDIQCE-ELSDARWAELLPLLQQCQVVRLDDCGLTEARCKDISSALRVNPALAELNLRSNELGDVGVHCVLQGLQ   81 (461)
T ss_dssp             EEEEEEEEESC-CCCHHHHHHHHHHHTTCSEEEEESSCCCHHHHHHHHHHHHTCTTCCEEECTTCCCHHHHHHHHHHTTC
T ss_pred             ccceehhhhhc-ccCchhHHHHHhhcCCccEEEccCCCCCHHHHHHHHHHHHhCCCcCEEeCCCCcCChHHHHHHHHHHh
Confidence            57899999884 577666554 78899999999999985322   456778889999999999986444333332 3344


Q ss_pred             ----CccEEEccCCCCCCh----hhhhcccCCCCCCEEEecccccChhhhhhc-----cCCCCCCeeeccCCCCchhh--
Q 012186          156 ----KLESLNIKWCNCITD----SDMKPLSGLTNLKSLQISCSKVTDSGIAYL-----KGLQKLTLLNLEGCPVTAAC--  220 (469)
Q Consensus       156 ----~L~~L~l~~~~~~~~----~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l-----~~l~~L~~L~l~~~~~~~~~--  220 (469)
                          +|++|++++|. +.+    ..+..+..+++|++|++++|.+.+.....+     ...++|++|++++|.+....  
T Consensus        82 ~~~~~L~~L~L~~n~-i~~~~~~~l~~~l~~~~~L~~L~Ls~n~i~~~~~~~l~~~l~~~~~~L~~L~L~~n~l~~~~~~  160 (461)
T 1z7x_W           82 TPSCKIQKLSLQNCC-LTGAGCGVLSSTLRTLPTLQELHLSDNLLGDAGLQLLCEGLLDPQCRLEKLQLEYCSLSAASCE  160 (461)
T ss_dssp             STTCCCCEEECTTSC-CBGGGHHHHHHHTTSCTTCCEEECCSSBCHHHHHHHHHHHHTSTTCCCCEEECTTSCCBGGGHH
T ss_pred             hCCCceeEEEccCCC-CCHHHHHHHHHHHccCCceeEEECCCCcCchHHHHHHHHHHhcCCCcceEEECCCCCCCHHHHH
Confidence                79999999965 443    346677899999999999999876554433     23568999999999887643  


Q ss_pred             --HHhhhcCCCCcEEECCCCCCChhHHHHhh-----cCCCccEEEccCCCCchH----HHHHhhCCCCCCEEecCCCCCC
Q 012186          221 --LDSLSALGSLFYLNLNRCQLSDDGCEKFS-----KIGSLKVLNLGFNEITDE----CLVHLKGLTNLESLNLDSCGIG  289 (469)
Q Consensus       221 --~~~~~~~~~L~~L~l~~~~~~~~~~~~~~-----~~~~L~~L~l~~~~~~~~----~~~~~~~l~~L~~L~l~~~~~~  289 (469)
                        +..+..+++|++|++++|.+.......+.     ..++|+.|++++|.+++.    .+..+..+++|++|++++|.+.
T Consensus       161 ~l~~~l~~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~l~  240 (461)
T 1z7x_W          161 PLASVLRAKPDFKELTVSNNDINEAGVRVLCQGLKDSPCQLEALKLESCGVTSDNCRDLCGIVASKASLRELALGSNKLG  240 (461)
T ss_dssp             HHHHHHHHCTTCCEEECCSSBCHHHHHHHHHHHHHHSCCCCCEEECTTSCCBTTHHHHHHHHHHHCTTCCEEECCSSBCH
T ss_pred             HHHHHHhhCCCCCEEECcCCCcchHHHHHHHHHHhcCCCCceEEEccCCCCcHHHHHHHHHHHHhCCCccEEeccCCcCC
Confidence              55667789999999999998776655553     367999999999998864    4566778899999999999887


Q ss_pred             hHHHHHh-----hCCCCCCEEeccCCCCChhh----HHHhhCCCCCcEEecccCCCCchHHHhhhC-----CCCCcEEEc
Q 012186          290 DEGLVNL-----TGLCNLKCLELSDTQVGSSG----LRHLSGLTNLESINLSFTGISDGSLRKLAG-----LSSLKSLNL  355 (469)
Q Consensus       290 ~~~~~~~-----~~~~~L~~L~l~~~~~~~~~----~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~-----~~~L~~L~l  355 (469)
                      ......+     ..+++|++|++++|.+....    +..+..+++|+.|++++|.+.+..+..+..     .++|+.|++
T Consensus       241 ~~~~~~l~~~~~~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~i~~~~~~~l~~~l~~~~~~L~~L~L  320 (461)
T 1z7x_W          241 DVGMAELCPGLLHPSSRLRTLWIWECGITAKGCGDLCRVLRAKESLKELSLAGNELGDEGARLLCETLLEPGCQLESLWV  320 (461)
T ss_dssp             HHHHHHHHHHHTSTTCCCCEEECTTSCCCHHHHHHHHHHHHHCTTCCEEECTTCCCHHHHHHHHHHHHTSTTCCCCEEEC
T ss_pred             hHHHHHHHHHHhcCCCCceEEECcCCCCCHHHHHHHHHHHhhCCCcceEECCCCCCchHHHHHHHHHhccCCccceeeEc
Confidence            6544333     25889999999999988763    445667999999999999988776665553     379999999


Q ss_pred             cCCCCCHHH----HHHHhcCCCCCEeecCCCCCChhHHHHhHc-----CCCCCeeeeCCCCCCH----HHHHHHhcCCCC
Q 012186          356 DARQITDTG----LAALTSLTGLTHLDLFGARITDSGAAYLRN-----FKNLRSLEICGGGLTD----AGVKHIKDLSSL  422 (469)
Q Consensus       356 ~~~~~~~~~----~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~-----~~~L~~L~l~~~~~~~----~~~~~l~~~~~L  422 (469)
                      ++|.++...    +..+..+++|++|++++|.+++..+..+..     .++|+.|++++|.+++    ..+..+..+++|
T Consensus       321 ~~n~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~i~~~~~~~l~~~l~~~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~L  400 (461)
T 1z7x_W          321 KSCSFTAACCSHFSSVLAQNRFLLELQISNNRLEDAGVRELCQGLGQPGSVLRVLWLADCDVSDSSCSSLAATLLANHSL  400 (461)
T ss_dssp             TTSCCBGGGHHHHHHHHHHCSSCCEEECCSSBCHHHHHHHHHHHHTSTTCCCCEEECTTSCCCHHHHHHHHHHHHHCCCC
T ss_pred             CCCCCchHHHHHHHHHHhhCCCccEEEccCCccccccHHHHHHHHcCCCCceEEEECCCCCCChhhHHHHHHHHHhCCCc
Confidence            999998763    455667899999999999998877766643     6799999999999997    567778889999


Q ss_pred             CeeeccCCCCCChhHHHHHHh-----CcccccccccCCCCCHHHH
Q 012186          423 TLLNLSQNCNLTDKTLELISG-----LTGLVSLNVSNSRITSAGL  462 (469)
Q Consensus       423 ~~L~l~~~~~l~~~~~~~l~~-----l~~L~~L~l~~~~~~~~~~  462 (469)
                      ++|++++| .++......+..     .++|+.|++.++.+++..-
T Consensus       401 ~~L~l~~N-~i~~~~~~~l~~~l~~~~~~L~~L~~~~~~~~~~~~  444 (461)
T 1z7x_W          401 RELDLSNN-CLGDAGILQLVESVRQPGCLLEQLVLYDIYWSEEME  444 (461)
T ss_dssp             CEEECCSS-SCCHHHHHHHHHHHTSTTCCCCEEECTTCCCCHHHH
T ss_pred             cEEECCCC-CCCHHHHHHHHHHhccCCcchhheeecccccCHHHH
Confidence            99999999 788876655542     2358888887777765443

>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697}

Probab=100.00  E-value=1.7e-37  Score=309.02  Aligned_cols=368  Identities=20%  Similarity=0.196  Sum_probs=300.8

Q ss_pred             CCCCEEecCCCcccChhHhHhhhCCCCCCEEeCCCCCc------------------------------------------
Q 012186           81 SNLQSLDFNFCIQISDGGLEHLRGLSNLTSLSFRRNNA------------------------------------------  118 (469)
Q Consensus        81 ~~L~~L~l~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~------------------------------------------  118 (469)
                      .+++.|+++++ .+....+.+++++++|++|++++|..                                          
T Consensus        81 ~~V~~L~L~~~-~l~g~lp~~l~~L~~L~~L~Ls~N~~~~~~~~~~~~~~~~~~~~~~~~~l~l~l~~~~l~~~~~~~~~  159 (636)
T 4eco_A           81 GRVTGLSLEGF-GASGRVPDAIGQLTELEVLALGSHGEKVNERLFGPKGISANMSDEQKQKMRMHYQKTFVDYDPREDFS  159 (636)
T ss_dssp             CCEEEEECTTS-CCEEEECGGGGGCTTCCEEESCCGGGGGTCCSBSTTSBCTTCCHHHHHHHHTHHHHHHTCCCGGGGSC
T ss_pred             CCEEEEEecCc-ccCCcCChHHhcCccceEEECcCCccccCCccccccccccCchHHHHHHHHhhHHHhhhccCchhhHH
Confidence            58999999984 67777889999999999999998842                                          


Q ss_pred             -----------------------------------CcHHHHHHHhCCCCCCEEeccccccccc-----------------
Q 012186          119 -----------------------------------ITAQGMKAFAGLINLVKLDLERCTRIHG-----------------  146 (469)
Q Consensus       119 -----------------------------------~~~~~~~~~~~l~~L~~L~l~~~~~~~~-----------------  146 (469)
                                                         ++. +|..++++++|++|++++|. +..                 
T Consensus       160 ~~~~~l~~~~l~~~~~~~~~~~~l~~l~l~~~~n~l~~-ip~~l~~l~~L~~L~Ls~n~-l~~~~~~~~~~~~~~~~~~~  237 (636)
T 4eco_A          160 DLIKDCINSDPQQKSIKKSSRITLKDTQIGQLSNNITF-VSKAVMRLTKLRQFYMGNSP-FVAENICEAWENENSEYAQQ  237 (636)
T ss_dssp             HHHHHHHHHCTTSCCCCCCCCCCCCTTTTTCCSCEEEE-ECGGGGGCTTCCEEEEESCC-CCGGGBSSSCSCTTSHHHHH
T ss_pred             HHHHHHhhcCccccccccccccchhhhhhccccCCCcc-CCHHHhcccCCCEEECcCCc-cccccccccccccccchhcc
Confidence                                               112 56678899999999999986 444                 


Q ss_pred             -cccccc--CCCCccEEEccCCCCCChhhhhcccCCCCCCEEEecccc-cCh-hhhhhccCC------CCCCeeeccCCC
Q 012186          147 -GLVNLK--GLMKLESLNIKWCNCITDSDMKPLSGLTNLKSLQISCSK-VTD-SGIAYLKGL------QKLTLLNLEGCP  215 (469)
Q Consensus       147 -~~~~l~--~l~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~-~~~-~~~~~l~~l------~~L~~L~l~~~~  215 (469)
                       .|..+.  ++++|++|++++|. +....+..+.++++|++|++++|. +++ ..+..+..+      ++|++|++++|.
T Consensus       238 ~ip~~l~~~~l~~L~~L~L~~n~-l~~~~p~~l~~l~~L~~L~Ls~n~~l~~~~lp~~~~~L~~~~~l~~L~~L~L~~n~  316 (636)
T 4eco_A          238 YKTEDLKWDNLKDLTDVEVYNCP-NLTKLPTFLKALPEMQLINVACNRGISGEQLKDDWQALADAPVGEKIQIIYIGYNN  316 (636)
T ss_dssp             HTTSCCCGGGCTTCCEEEEECCT-TCSSCCTTTTTCSSCCEEECTTCTTSCHHHHHHHHHHHHHSGGGGTCCEEECCSSC
T ss_pred             cCchhhhhcccCCCCEEEecCCc-CCccChHHHhcCCCCCEEECcCCCCCccccchHHHHhhhccccCCCCCEEECCCCc
Confidence             677778  99999999999865 444566788899999999999998 886 556666554      899999999998


Q ss_pred             CchhhHH--hhhcCCCCcEEECCCCCCChhHHHHhhcCCCccEEEccCCCCchHHHHHhhCCCC-CCEEecCCCCCChHH
Q 012186          216 VTAACLD--SLSALGSLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTN-LESLNLDSCGIGDEG  292 (469)
Q Consensus       216 ~~~~~~~--~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~-L~~L~l~~~~~~~~~  292 (469)
                      +.. .|.  .+..+++|+.|++++|.+.+..+ .+..+++|+.|++++|.+. ..+..+..+++ |+.|++++|.+.. .
T Consensus       317 l~~-ip~~~~l~~l~~L~~L~L~~N~l~g~ip-~~~~l~~L~~L~L~~N~l~-~lp~~l~~l~~~L~~L~Ls~N~l~~-l  392 (636)
T 4eco_A          317 LKT-FPVETSLQKMKKLGMLECLYNQLEGKLP-AFGSEIKLASLNLAYNQIT-EIPANFCGFTEQVENLSFAHNKLKY-I  392 (636)
T ss_dssp             CSS-CCCHHHHTTCTTCCEEECCSCCCEEECC-CCEEEEEESEEECCSSEEE-ECCTTSEEECTTCCEEECCSSCCSS-C
T ss_pred             CCc-cCchhhhccCCCCCEEeCcCCcCccchh-hhCCCCCCCEEECCCCccc-cccHhhhhhcccCcEEEccCCcCcc-c
Confidence            884 455  78899999999999999885555 7888899999999999887 45666888888 9999999998873 3


Q ss_pred             HHHhhCC--CCCCEEeccCCCCChhhHHHhh-------CCCCCcEEecccCCCCchHHHhhhCCCCCcEEEccCCCCCHH
Q 012186          293 LVNLTGL--CNLKCLELSDTQVGSSGLRHLS-------GLTNLESINLSFTGISDGSLRKLAGLSSLKSLNLDARQITDT  363 (469)
Q Consensus       293 ~~~~~~~--~~L~~L~l~~~~~~~~~~~~~~-------~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~  363 (469)
                      +..+...  ++|+.|++++|.+....+..+.       .+++|+.|++++|.+.......+..+++|+.|++++|.++..
T Consensus       393 p~~~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~~~~~~~~~~~L~~L~Ls~N~l~~lp~~~~~~l~~L~~L~Ls~N~l~~i  472 (636)
T 4eco_A          393 PNIFDAKSVSVMSAIDFSYNEIGSVDGKNFDPLDPTPFKGINVSSINLSNNQISKFPKELFSTGSPLSSINLMGNMLTEI  472 (636)
T ss_dssp             CSCCCTTCSSCEEEEECCSSCTTTTTTCSSCTTCSSCCCCCCEEEEECCSSCCCSCCTHHHHTTCCCSEEECCSSCCSBC
T ss_pred             chhhhhcccCccCEEECcCCcCCCcchhhhcccccccccCCCCCEEECcCCccCcCCHHHHccCCCCCEEECCCCCCCCc
Confidence            4444443  4899999999998877666666       778999999999999876666677789999999999999855


Q ss_pred             HHHHHhcC-------CCCCEeecCCCCCChhHHHHhH--cCCCCCeeeeCCCCCCHHHHHHHhcCCCCCeeeccC-----
Q 012186          364 GLAALTSL-------TGLTHLDLFGARITDSGAAYLR--NFKNLRSLEICGGGLTDAGVKHIKDLSSLTLLNLSQ-----  429 (469)
Q Consensus       364 ~~~~l~~~-------~~L~~L~l~~~~~~~~~~~~~~--~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~-----  429 (469)
                      ....+...       ++|++|++++|.++. +|..+.  .+++|+.|++++|.+++ .|..+..+++|++|++++     
T Consensus       473 ~~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~-lp~~~~~~~l~~L~~L~Ls~N~l~~-ip~~~~~l~~L~~L~Ls~N~~ls  550 (636)
T 4eco_A          473 PKNSLKDENENFKNTYLLTSIDLRFNKLTK-LSDDFRATTLPYLVGIDLSYNSFSK-FPTQPLNSSTLKGFGIRNQRDAQ  550 (636)
T ss_dssp             CSSSSEETTEECTTGGGCCEEECCSSCCCB-CCGGGSTTTCTTCCEEECCSSCCSS-CCCGGGGCSSCCEEECCSCBCTT
T ss_pred             CHHHhccccccccccCCccEEECcCCcCCc-cChhhhhccCCCcCEEECCCCCCCC-cChhhhcCCCCCEEECCCCcccc
Confidence            43333333       289999999999995 556665  89999999999999998 578888999999999954     


Q ss_pred             -CCCCChhHHHHHHhCcccccccccCCCCCH
Q 012186          430 -NCNLTDKTLELISGLTGLVSLNVSNSRITS  459 (469)
Q Consensus       430 -~~~l~~~~~~~l~~l~~L~~L~l~~~~~~~  459 (469)
                       | .+....|..+..+++|+.|++++|+++.
T Consensus       551 ~N-~l~~~~p~~l~~l~~L~~L~Ls~N~l~~  580 (636)
T 4eco_A          551 GN-RTLREWPEGITLCPSLTQLQIGSNDIRK  580 (636)
T ss_dssp             CC-BCCCCCCTTGGGCSSCCEEECCSSCCCB
T ss_pred             cC-cccccChHHHhcCCCCCEEECCCCcCCc
Confidence             5 5677778889999999999999999854

>2z7x_B TOLL-like receptor 1, variable lymphocyte recepto; TLR2, TLR1, lipopeptide, innate immunity, glycoPro immune response, inflammatory response, leucine-rich repeat membrane, receptor; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens}

Probab=100.00  E-value=2.5e-36  Score=295.31  Aligned_cols=384  Identities=18%  Similarity=0.151  Sum_probs=291.4

Q ss_pred             cEEEecCCCCChHhhHhhhcCCCCCEEecCCCcccChhHhHhhhCCCCCCEEeCCCCCcCcHHHHHHHhCCCCCCEEecc
Q 012186           60 LSVDLSGSDVTDSGLIHLKDCSNLQSLDFNFCIQISDGGLEHLRGLSNLTSLSFRRNNAITAQGMKAFAGLINLVKLDLE  139 (469)
Q Consensus        60 ~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~l~  139 (469)
                      ++|+++++.++. +|..+.  ++|++|++++| .++...+..|.++++|++|++++|.+ ....|..++.+++|++|+++
T Consensus         3 ~~l~ls~n~l~~-ip~~~~--~~L~~L~Ls~n-~i~~~~~~~~~~l~~L~~L~Ls~n~l-~~~~~~~~~~l~~L~~L~Ls   77 (520)
T 2z7x_B            3 FLVDRSKNGLIH-VPKDLS--QKTTILNISQN-YISELWTSDILSLSKLRILIISHNRI-QYLDISVFKFNQELEYLDLS   77 (520)
T ss_dssp             CEEECTTSCCSS-CCCSCC--TTCSEEECCSS-CCCCCCHHHHTTCTTCCEEECCSSCC-CEEEGGGGTTCTTCCEEECC
T ss_pred             ceEecCCCCccc-cccccc--ccccEEECCCC-cccccChhhccccccccEEecCCCcc-CCcChHHhhcccCCCEEecC
Confidence            689999999984 665554  89999999995 67777788999999999999999974 55567889999999999999


Q ss_pred             cccccccccccccCCCCccEEEccCCCCCChhhhhcccCCCCCCEEEecccccChhhhhhccCCCCC--CeeeccCCCC-
Q 012186          140 RCTRIHGGLVNLKGLMKLESLNIKWCNCITDSDMKPLSGLTNLKSLQISCSKVTDSGIAYLKGLQKL--TLLNLEGCPV-  216 (469)
Q Consensus       140 ~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~l~~L--~~L~l~~~~~-  216 (469)
                      +|. +...+..  .+++|++|++++|.......+..++.+++|++|++++|.+...   .+..+++|  ++|++++|.+ 
T Consensus        78 ~N~-l~~lp~~--~l~~L~~L~L~~N~l~~~~~p~~~~~l~~L~~L~L~~n~l~~~---~~~~l~~L~L~~L~l~~n~l~  151 (520)
T 2z7x_B           78 HNK-LVKISCH--PTVNLKHLDLSFNAFDALPICKEFGNMSQLKFLGLSTTHLEKS---SVLPIAHLNISKVLLVLGETY  151 (520)
T ss_dssp             SSC-CCEEECC--CCCCCSEEECCSSCCSSCCCCGGGGGCTTCCEEEEEESSCCGG---GGGGGTTSCEEEEEEEECTTT
T ss_pred             CCc-eeecCcc--ccCCccEEeccCCccccccchhhhccCCcceEEEecCcccchh---hccccccceeeEEEeeccccc
Confidence            984 4444444  8999999999996543323567889999999999999998863   45666777  9999999877 


Q ss_pred             -chhhHHhhhc--------------------------CCCCcEEECCCCC-------CChhHHHHhhcCCCccEEEccCC
Q 012186          217 -TAACLDSLSA--------------------------LGSLFYLNLNRCQ-------LSDDGCEKFSKIGSLKVLNLGFN  262 (469)
Q Consensus       217 -~~~~~~~~~~--------------------------~~~L~~L~l~~~~-------~~~~~~~~~~~~~~L~~L~l~~~  262 (469)
                       ....+..+..                          +++|+.+++++|.       +.+.. ..+..+++|+.|+++++
T Consensus       152 ~~~~~~~~l~~l~~~~l~l~l~~n~~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~-~~l~~l~~L~~L~l~~~  230 (520)
T 2z7x_B          152 GEKEDPEGLQDFNTESLHIVFPTNKEFHFILDVSVKTVANLELSNIKCVLEDNKCSYFLSIL-AKLQTNPKLSNLTLNNI  230 (520)
T ss_dssp             TSSCCTTTTTTCCEEEEEEECCSSSCCCCCCCCCCTTCSEEEECCEEECCSTTTTHHHHHHH-HGGGGCTTCCEEEEEEE
T ss_pred             ccccccccccccccceEEEEeccCcchhhhhhhhhhcccceeeccccccccccccceeecch-hhhccccchhhcccccc
Confidence             4433444433                          5667777777664       33322 36778889999999888


Q ss_pred             CCchHHHHHh---hCCCCCCEEecCCCCCChHHHHHh-----hCCCCCC--------------------------EEecc
Q 012186          263 EITDECLVHL---KGLTNLESLNLDSCGIGDEGLVNL-----TGLCNLK--------------------------CLELS  308 (469)
Q Consensus       263 ~~~~~~~~~~---~~l~~L~~L~l~~~~~~~~~~~~~-----~~~~~L~--------------------------~L~l~  308 (469)
                      .+.+.....+   ...++|+.|++++|.+.+..+..+     ..+++|+                          .|+++
T Consensus       231 ~l~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~p~~~~~~~~~~l~~L~~l~l~~n~~~~p~~~~~~~~~~~~L~~L~l~  310 (520)
T 2z7x_B          231 ETTWNSFIRILQLVWHTTVWYFSISNVKLQGQLDFRDFDYSGTSLKALSIHQVVSDVFGFPQSYIYEIFSNMNIKNFTVS  310 (520)
T ss_dssp             EEEHHHHHHHHHHHHTSSCSEEEEEEEEEESCCCCCCCCCCSCCCCEEEEEEEEECCCCSCTHHHHHHHHTCCCSEEEEE
T ss_pred             ccCHHHHHHHHHHhhhCcccEEEeecccccCccccchhhcccccCceeEeccccccceecchhhhhcccccCceeEEEcC
Confidence            7775433322   124689999988876553333333     3444444                          44444


Q ss_pred             CCCCChhhHHHhhCCCCCcEEecccCCCCchHHHhhhCCCCCcEEEccCCCCCHH--HHHHHhcCCCCCEeecCCCCCCh
Q 012186          309 DTQVGSSGLRHLSGLTNLESINLSFTGISDGSLRKLAGLSSLKSLNLDARQITDT--GLAALTSLTGLTHLDLFGARITD  386 (469)
Q Consensus       309 ~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~--~~~~l~~~~~L~~L~l~~~~~~~  386 (469)
                      +|.+....  ....+++|++|++++|.+.+..+..+..+++|+.|++++|.++..  .+..+..+++|++|++++|.+++
T Consensus       311 ~n~l~~~~--~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~l~~~~~~~~~l~~L~~L~Ls~N~l~~  388 (520)
T 2z7x_B          311 GTRMVHML--CPSKISPFLHLDFSNNLLTDTVFENCGHLTELETLILQMNQLKELSKIAEMTTQMKSLQQLDISQNSVSY  388 (520)
T ss_dssp             SSCCCCCC--CCSSCCCCCEEECCSSCCCTTTTTTCCCCSSCCEEECCSSCCCBHHHHHHHHTTCTTCCEEECCSSCCBC
T ss_pred             CCcccccc--chhhCCcccEEEeECCccChhhhhhhccCCCCCEEEccCCccCccccchHHHhhCCCCCEEECCCCcCCc
Confidence            44333211  115789999999999999887778888999999999999999973  34678899999999999999998


Q ss_pred             hHH-HHhHcCCCCCeeeeCCCCCCHHHHHHHhcCCCCCeeeccCCCCCChhHHHHHHhCcccccccccCCCCCHHH
Q 012186          387 SGA-AYLRNFKNLRSLEICGGGLTDAGVKHIKDLSSLTLLNLSQNCNLTDKTLELISGLTGLVSLNVSNSRITSAG  461 (469)
Q Consensus       387 ~~~-~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~l~~~~~~~l~~l~~L~~L~l~~~~~~~~~  461 (469)
                      .+| ..+..+++|+.|++++|.+++..|..+.  ++|+.|++++| .++. .|..+..+++|+.|++++|+++...
T Consensus       389 ~l~~~~~~~l~~L~~L~Ls~N~l~~~~~~~l~--~~L~~L~Ls~N-~l~~-ip~~~~~l~~L~~L~L~~N~l~~l~  460 (520)
T 2z7x_B          389 DEKKGDCSWTKSLLSLNMSSNILTDTIFRCLP--PRIKVLDLHSN-KIKS-IPKQVVKLEALQELNVASNQLKSVP  460 (520)
T ss_dssp             CGGGCSCCCCTTCCEEECCSSCCCGGGGGSCC--TTCCEEECCSS-CCCC-CCGGGGGCTTCCEEECCSSCCCCCC
T ss_pred             ccccchhccCccCCEEECcCCCCCcchhhhhc--ccCCEEECCCC-cccc-cchhhhcCCCCCEEECCCCcCCccC
Confidence            444 3477889999999999999887665442  79999999999 7774 4555669999999999999988643

>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A*

Probab=100.00  E-value=9.4e-36  Score=293.44  Aligned_cols=395  Identities=20%  Similarity=0.162  Sum_probs=257.4

Q ss_pred             CCccEEEecCCCCChHhhHhhhcCCCCCEEecCCCcccChhHhHhhhCCCCCCEEeCCCCCcCcHHHHHHHhCCCCCCEE
Q 012186           57 SSLLSVDLSGSDVTDSGLIHLKDCSNLQSLDFNFCIQISDGGLEHLRGLSNLTSLSFRRNNAITAQGMKAFAGLINLVKL  136 (469)
Q Consensus        57 ~~l~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L  136 (469)
                      +.....+.+++.++. +|..+  .++|++|++++| .++...+..+.++++|++|++++|.+ ....+..+..+++|++|
T Consensus         5 ~~~~~c~~~~~~l~~-ip~~~--~~~L~~L~Ls~n-~l~~~~~~~~~~l~~L~~L~Ls~n~i-~~~~~~~~~~l~~L~~L   79 (549)
T 2z81_A            5 DASGVCDGRSRSFTS-IPSGL--TAAMKSLDLSFN-KITYIGHGDLRACANLQVLILKSSRI-NTIEGDAFYSLGSLEHL   79 (549)
T ss_dssp             CTTSEEECTTSCCSS-CCSCC--CTTCCEEECCSS-CCCEECSSTTSSCTTCCEEECTTSCC-CEECTTTTTTCTTCCEE
T ss_pred             CCCceEECCCCcccc-ccccC--CCCccEEECcCC-ccCccChhhhhcCCcccEEECCCCCc-CccChhhccccccCCEE
Confidence            334446777777763 45433  379999999995 67877778899999999999999974 45566789999999999


Q ss_pred             ecccccccccccccccCCCCccEEEccCCCCCChhhhhcccCCCCCCEEEecccc-cChhhhhhccCCCCCCeeeccCCC
Q 012186          137 DLERCTRIHGGLVNLKGLMKLESLNIKWCNCITDSDMKPLSGLTNLKSLQISCSK-VTDSGIAYLKGLQKLTLLNLEGCP  215 (469)
Q Consensus       137 ~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~-~~~~~~~~l~~l~~L~~L~l~~~~  215 (469)
                      ++++|......+..+..+++|++|++++|.......+..+..+++|++|++++|. +.......+..+++|++|++++|.
T Consensus        80 ~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~~~~~l~~L~~L~L~~n~  159 (549)
T 2z81_A           80 DLSDNHLSSLSSSWFGPLSSLKYLNLMGNPYQTLGVTSLFPNLTNLQTLRIGNVETFSEIRRIDFAGLTSLNELEIKALS  159 (549)
T ss_dssp             ECTTSCCCSCCHHHHTTCTTCCEEECTTCCCSSSCSSCSCTTCTTCCEEEEEESSSCCEECTTTTTTCCEEEEEEEEETT
T ss_pred             ECCCCccCccCHHHhccCCCCcEEECCCCcccccchhhhhhccCCccEEECCCCccccccCHhhhhcccccCeeeccCCc
Confidence            9999865444445699999999999999654332345678899999999999997 555555678999999999999999


Q ss_pred             CchhhHHhhhcCCCCcEEECCCCCCChhHHHHhhcCCCccEEEccCCCCchHH---HHHhhCCCCCCEEecCCCCCChHH
Q 012186          216 VTAACLDSLSALGSLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDEC---LVHLKGLTNLESLNLDSCGIGDEG  292 (469)
Q Consensus       216 ~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~---~~~~~~l~~L~~L~l~~~~~~~~~  292 (469)
                      +....+..+..+++|+.|++.++.+.......+..+++|+.|++++|.+.+..   ......+++|+.|++.++.+.+..
T Consensus       160 l~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~  239 (549)
T 2z81_A          160 LRNYQSQSLKSIRDIHHLTLHLSESAFLLEIFADILSSVRYLELRDTNLARFQFSPLPVDEVSSPMKKLAFRGSVLTDES  239 (549)
T ss_dssp             CCEECTTTTTTCSEEEEEEEECSBSTTHHHHHHHSTTTBSEEEEESCBCTTCCCCCCSSCCCCCCCCEEEEESCEEEHHH
T ss_pred             ccccChhhhhccccCceEecccCcccccchhhHhhcccccEEEccCCccccccccccchhhhhhcccceeccccccchhH
Confidence            98877888999999999999999887654444567899999999988776421   001112233333333333222211


Q ss_pred             HHHh---------------------------------------------------------------hCCCCCCEEeccC
Q 012186          293 LVNL---------------------------------------------------------------TGLCNLKCLELSD  309 (469)
Q Consensus       293 ~~~~---------------------------------------------------------------~~~~~L~~L~l~~  309 (469)
                      +..+                                                               ...++|+.|++.+
T Consensus       240 ~~~l~~~~~~~~~L~~l~l~~~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~i~~~~~~~~l~~~~~~~~~L~~L~l~~  319 (549)
T 2z81_A          240 FNELLKLLRYILELSEVEFDDCTLNGLGDFNPSESDVVSELGKVETVTIRRLHIPQFYLFYDLSTVYSLLEKVKRITVEN  319 (549)
T ss_dssp             HHHHHGGGGGCTTCCEEEEESCEEECCSCCCCCTTTCCCCCTTCCEEEEESCBCSCGGGSCCCCHHHHHSTTCCEEEEES
T ss_pred             HHHHHHHhhhhccccccccccccccccccccccchhhhhhhcccccccccccccchhhhcccchhhhhhcccceEEEecc
Confidence            1111                                                               1112344444444


Q ss_pred             CCCChhhHHHhhCCCCCcEEecccCCCCchHHHh---hhCCCCCcEEEccCCCCCHHHH--HHHhcCCCCCEeecCCCCC
Q 012186          310 TQVGSSGLRHLSGLTNLESINLSFTGISDGSLRK---LAGLSSLKSLNLDARQITDTGL--AALTSLTGLTHLDLFGARI  384 (469)
Q Consensus       310 ~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~---~~~~~~L~~L~l~~~~~~~~~~--~~l~~~~~L~~L~l~~~~~  384 (469)
                      |.+.......+..+++|++|++++|.+.+..+..   +..+++|+.|++++|.++....  ..+..+++|++|++++|++
T Consensus       320 n~l~~ip~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~~l~~L~~L~Ls~N~l  399 (549)
T 2z81_A          320 SKVFLVPCSFSQHLKSLEFLDLSENLMVEEYLKNSACKGAWPSLQTLVLSQNHLRSMQKTGEILLTLKNLTSLDISRNTF  399 (549)
T ss_dssp             SCCCCCCHHHHHHCTTCCEEECCSSCCCHHHHHHHTCTTSSTTCCEEECTTSCCCCHHHHHHHGGGCTTCCEEECTTCCC
T ss_pred             CccccCCHHHHhcCccccEEEccCCccccccccchhhhhccccCcEEEccCCcccccccchhhhhcCCCCCEEECCCCCC
Confidence            4444333333345666666666666665544322   3455666666666666655432  3355566666666666655


Q ss_pred             ChhHHHHhHcCCCCCeeeeCCCCCCHHHHH-----------------HHhcCCCCCeeeccCCCCCChhHHHHHHhCccc
Q 012186          385 TDSGAAYLRNFKNLRSLEICGGGLTDAGVK-----------------HIKDLSSLTLLNLSQNCNLTDKTLELISGLTGL  447 (469)
Q Consensus       385 ~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~-----------------~l~~~~~L~~L~l~~~~~l~~~~~~~l~~l~~L  447 (469)
                      +. +|..+..+++|+.|++++|.++.....                 .+..+++|++|++++| .++....  ...+++|
T Consensus       400 ~~-lp~~~~~~~~L~~L~Ls~N~l~~l~~~~~~~L~~L~Ls~N~l~~~~~~l~~L~~L~Ls~N-~l~~ip~--~~~l~~L  475 (549)
T 2z81_A          400 HP-MPDSCQWPEKMRFLNLSSTGIRVVKTCIPQTLEVLDVSNNNLDSFSLFLPRLQELYISRN-KLKTLPD--ASLFPVL  475 (549)
T ss_dssp             CC-CCSCCCCCTTCCEEECTTSCCSCCCTTSCTTCSEEECCSSCCSCCCCCCTTCCEEECCSS-CCSSCCC--GGGCTTC
T ss_pred             cc-CChhhcccccccEEECCCCCcccccchhcCCceEEECCCCChhhhcccCChhcEEECCCC-ccCcCCC--cccCccC
Confidence            53 233444445555555555544322100                 0135677888888888 6664332  3567888


Q ss_pred             ccccccCCCCCHH
Q 012186          448 VSLNVSNSRITSA  460 (469)
Q Consensus       448 ~~L~l~~~~~~~~  460 (469)
                      +.|++++|+++..
T Consensus       476 ~~L~Ls~N~l~~~  488 (549)
T 2z81_A          476 LVMKISRNQLKSV  488 (549)
T ss_dssp             CEEECCSSCCCCC
T ss_pred             CEEecCCCccCCc
Confidence            8888888887753

>3v47_A TOLL-like receptor 5B and variable lymphocyte REC chimeric protein; innate immunity, leucine-rich repeat, innate immune receptor system; HET: NAG; 2.47A {Danio rerio} PDB: 3v44_A*

Probab=100.00  E-value=1.1e-35  Score=286.03  Aligned_cols=341  Identities=16%  Similarity=0.146  Sum_probs=240.9

Q ss_pred             hcCCCccEEEecCCCCChHh-hHhhhcCCCCCEEecCCCcccChhHhHhhhCCCCCCEEeCCCCCcCcHHHHHH--HhCC
Q 012186           54 SQGSSLLSVDLSGSDVTDSG-LIHLKDCSNLQSLDFNFCIQISDGGLEHLRGLSNLTSLSFRRNNAITAQGMKA--FAGL  130 (469)
Q Consensus        54 ~~~~~l~~L~l~~~~~~~~~-~~~~~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~--~~~l  130 (469)
                      ...+++++|+++++.+.+.+ +..|..+++|++|++++| .++...+..+.++++|++|++++|.+ ....+..  +..+
T Consensus        51 ~~l~~L~~L~L~~n~~~~~i~~~~~~~l~~L~~L~Ls~n-~l~~~~~~~~~~l~~L~~L~L~~n~l-~~~~~~~~~~~~l  128 (455)
T 3v47_A           51 SRLQDLQFLKVEQQTPGLVIRNNTFRGLSSLIILKLDYN-QFLQLETGAFNGLANLEVLTLTQCNL-DGAVLSGNFFKPL  128 (455)
T ss_dssp             SSCTTCCEEECCCCSTTCEECTTTTTTCTTCCEEECTTC-TTCEECTTTTTTCTTCCEEECTTSCC-BTHHHHSSTTTTC
T ss_pred             ccCccccEEECcCCcccceECcccccccccCCEEeCCCC-ccCccChhhccCcccCCEEeCCCCCC-CccccCcccccCc
Confidence            35689999999999887544 567899999999999995 67777788999999999999999985 4434544  8899


Q ss_pred             CCCCEEeccccccccccccc-ccCCCCccEEEccCCCCCChhhhhcccCC--CCCCEEEecccccChhhhhh--------
Q 012186          131 INLVKLDLERCTRIHGGLVN-LKGLMKLESLNIKWCNCITDSDMKPLSGL--TNLKSLQISCSKVTDSGIAY--------  199 (469)
Q Consensus       131 ~~L~~L~l~~~~~~~~~~~~-l~~l~~L~~L~l~~~~~~~~~~~~~~~~~--~~L~~L~l~~~~~~~~~~~~--------  199 (469)
                      ++|++|++++|......+.. +..+++|++|+++++. +....+..+..+  .+|+.++++++.+.......        
T Consensus       129 ~~L~~L~L~~n~l~~~~~~~~~~~l~~L~~L~L~~n~-l~~~~~~~l~~l~~~~L~~L~l~~n~l~~~~~~~~~~~~~~~  207 (455)
T 3v47_A          129 TSLEMLVLRDNNIKKIQPASFFLNMRRFHVLDLTFNK-VKSICEEDLLNFQGKHFTLLRLSSITLQDMNEYWLGWEKCGN  207 (455)
T ss_dssp             TTCCEEECCSSBCCSCCCCGGGGGCTTCCEEECTTCC-BSCCCTTTSGGGTTCEEEEEECTTCBCTTCSTTCTTHHHHCC
T ss_pred             ccCCEEECCCCccCccCcccccCCCCcccEEeCCCCc-ccccChhhhhccccccccccccccCcccccchhhcccccccc
Confidence            99999999998654444544 8899999999999955 454455555544  78999999998877643322        


Q ss_pred             ccCCCCCCeeeccCCCCchhhHHhhhcC---CCCcEEECCCCCCChhHHHHhhcCCCccEEEccCCCCchHHHHHh--hC
Q 012186          200 LKGLQKLTLLNLEGCPVTAACLDSLSAL---GSLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHL--KG  274 (469)
Q Consensus       200 l~~l~~L~~L~l~~~~~~~~~~~~~~~~---~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~--~~  274 (469)
                      +..+++|++|++++|.+....+..+...   ++|+.|++.++........              .+.+.......+  ..
T Consensus       208 ~~~~~~L~~L~Ls~n~l~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~--------------~~~~~~~~~~~~~~~~  273 (455)
T 3v47_A          208 PFKNTSITTLDLSGNGFKESMAKRFFDAIAGTKIQSLILSNSYNMGSSFG--------------HTNFKDPDNFTFKGLE  273 (455)
T ss_dssp             TTTTCEEEEEECTTSCCCHHHHHHHHHHTTTCCEEEEECTTCTTTSCCTT--------------CCSSCCCCTTTTGGGT
T ss_pred             ccccceeeeEecCCCcccccchhhhhccccccceeeEeeccccccccccc--------------hhhhccCccccccccc
Confidence            2355678888888888777666655443   7777888777654321100              000000000011  12


Q ss_pred             CCCCCEEecCCCCCChHHHHHhhCCCCCCEEeccCCCCChhhHHHhhCCCCCcEEecccCCCCchHHHhhhCCCCCcEEE
Q 012186          275 LTNLESLNLDSCGIGDEGLVNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISDGSLRKLAGLSSLKSLN  354 (469)
Q Consensus       275 l~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~  354 (469)
                      .++|+.|++++|.+....+..+..+++|+.|++++|.+....+..+..+++|+.|++++|.+.+..+..+..+++|+.|+
T Consensus       274 ~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~  353 (455)
T 3v47_A          274 ASGVKTCDLSKSKIFALLKSVFSHFTDLEQLTLAQNEINKIDDNAFWGLTHLLKLNLSQNFLGSIDSRMFENLDKLEVLD  353 (455)
T ss_dssp             TSCCCEEECCSSCCCEECTTTTTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCEECGGGGTTCTTCCEEE
T ss_pred             ccCceEEEecCccccccchhhcccCCCCCEEECCCCcccccChhHhcCcccCCEEECCCCccCCcChhHhcCcccCCEEE
Confidence            35677777777766655555566677777777777777666666667777777777777777666666677777777777


Q ss_pred             ccCCCCCHHHHHHHhcCCCCCEeecCCCCCChhHHHHhHcCCCCCeeeeCCCCCCHH
Q 012186          355 LDARQITDTGLAALTSLTGLTHLDLFGARITDSGAAYLRNFKNLRSLEICGGGLTDA  411 (469)
Q Consensus       355 l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~  411 (469)
                      +++|.++...+..+..+++|++|++++|++++..+..+..+++|+.|++++|.++..
T Consensus       354 Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~l~~~  410 (455)
T 3v47_A          354 LSYNHIRALGDQSFLGLPNLKELALDTNQLKSVPDGIFDRLTSLQKIWLHTNPWDCS  410 (455)
T ss_dssp             CCSSCCCEECTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSCBCCC
T ss_pred             CCCCcccccChhhccccccccEEECCCCccccCCHhHhccCCcccEEEccCCCcccC
Confidence            777777776666677777777777777777776666667777788888877776543

>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens}

Probab=100.00  E-value=3e-37  Score=305.67  Aligned_cols=393  Identities=20%  Similarity=0.239  Sum_probs=290.9

Q ss_pred             ccEEEecCCCCChHhhHhhhcCCCCCEEecCCCcccChhHhHhhhCCCCCCEEeCCCCCcCcHHHHHHHhCCCCCCEEec
Q 012186           59 LLSVDLSGSDVTDSGLIHLKDCSNLQSLDFNFCIQISDGGLEHLRGLSNLTSLSFRRNNAITAQGMKAFAGLINLVKLDL  138 (469)
Q Consensus        59 l~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~l  138 (469)
                      .+.++.++.+++. +|..+  .++++.|++++| .++...+..|.++++|++|++++|.+ ....+..|.++++|++|++
T Consensus         9 ~~~~~c~~~~l~~-ip~~l--~~~l~~L~Ls~n-~l~~~~~~~~~~l~~L~~L~Ls~n~i-~~i~~~~~~~l~~L~~L~L   83 (570)
T 2z63_A            9 NITYQCMELNFYK-IPDNL--PFSTKNLDLSFN-PLRHLGSYSFFSFPELQVLDLSRCEI-QTIEDGAYQSLSHLSTLIL   83 (570)
T ss_dssp             TTEEECCSSCCSS-CCSSS--CSSCCEEECCSC-CCCEECTTTTTTCSSCCEEECTTCCC-CEECTTTTTTCTTCCEEEC
T ss_pred             CcEEEeCCCCccc-cCCCc--cccccEEEccCC-ccCccChhHhhCCCCceEEECCCCcC-CccCcccccCchhCCEEeC
Confidence            4556777666653 44433  358999999994 67777778899999999999999974 4555678899999999999


Q ss_pred             ccccccccccccccCCCCccEEEccCCCCCChhhhhcccCCCCCCEEEecccccChh-hhhhccCCCCCCeeeccCCCCc
Q 012186          139 ERCTRIHGGLVNLKGLMKLESLNIKWCNCITDSDMKPLSGLTNLKSLQISCSKVTDS-GIAYLKGLQKLTLLNLEGCPVT  217 (469)
Q Consensus       139 ~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~-~~~~l~~l~~L~~L~l~~~~~~  217 (469)
                      ++|......+..+..+++|++|+++++. +.......++.+++|++|++++|.+... .+..+.++++|++|++++|.+.
T Consensus        84 ~~n~l~~~~~~~~~~l~~L~~L~L~~n~-l~~l~~~~~~~l~~L~~L~L~~n~l~~~~lp~~~~~l~~L~~L~l~~n~l~  162 (570)
T 2z63_A           84 TGNPIQSLALGAFSGLSSLQKLVAVETN-LASLENFPIGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQ  162 (570)
T ss_dssp             TTCCCCEECTTTTTTCTTCCEEECTTSC-CCCSTTCSCTTCTTCCEEECCSSCCCCCCCCGGGGGCTTCCEEECTTSCCC
T ss_pred             cCCcCCccCHhhhcCccccccccccccc-cccCCCccccccccccEEecCCCccceecChhhhcccCCCCEEeCcCCccc
Confidence            9986544445789999999999999954 5544445688999999999999988863 4677899999999999999988


Q ss_pred             hhhHHhhhcCCCC----cEEECCCCCCChhHHHHh---------------------------------------------
Q 012186          218 AACLDSLSALGSL----FYLNLNRCQLSDDGCEKF---------------------------------------------  248 (469)
Q Consensus       218 ~~~~~~~~~~~~L----~~L~l~~~~~~~~~~~~~---------------------------------------------  248 (469)
                      ...+..+..+++|    ..+++.+|.+....+..+                                             
T Consensus       163 ~~~~~~~~~l~~L~~~~~~L~l~~n~l~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~l~~l~~~~l~~~~~~~~~~  242 (570)
T 2z63_A          163 SIYCTDLRVLHQMPLLNLSLDLSLNPMNFIQPGAFKEIRLHKLTLRNNFDSLNVMKTCIQGLAGLEVHRLVLGEFRNEGN  242 (570)
T ss_dssp             EECGGGGHHHHTCTTCCCEEECTTCCCCEECTTTTTTCEEEEEEEESCCSCTTHHHHHHHTTTTCEEEEEEEEECCCCSS
T ss_pred             eecHHHccchhccchhhhhcccCCCCceecCHHHhccCcceeEecccccccccchhhhhcCccccceeeeccccccCchh
Confidence            7766667766666    778888776654333222                                             


Q ss_pred             ------------------------------------hcCCCccEEEccCCCCchHHHHHhhCCCCCCEEecCCCCCChHH
Q 012186          249 ------------------------------------SKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNLDSCGIGDEG  292 (469)
Q Consensus       249 ------------------------------------~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~  292 (469)
                                                          ..+++|+.|+++++.+.. .+..+..+ +|+.|++++|.+....
T Consensus       243 l~~~~~~~~~~l~~l~l~~l~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~l~~-l~~~~~~~-~L~~L~l~~n~~~~l~  320 (570)
T 2z63_A          243 LEKFDKSALEGLCNLTIEEFRLAYLDYYLDDIIDLFNCLTNVSSFSLVSVTIER-VKDFSYNF-GWQHLELVNCKFGQFP  320 (570)
T ss_dssp             CEECCTTTTGGGGGSEEEEEEEEETTEEESCSTTTTGGGTTCSEEEEESCEECS-CCBCCSCC-CCSEEEEESCBCSSCC
T ss_pred             hhhcchhhhccccccchhhhhhhcchhhhhhchhhhcCcCcccEEEecCccchh-hhhhhccC-CccEEeeccCcccccC
Confidence                                                234555555555554442 22333333 5555555555433111


Q ss_pred             HHH-------------------hhCCCCCCEEeccCCCCChhh--HHHhhCCCCCcEEecccCCCCchHHHhhhCCCCCc
Q 012186          293 LVN-------------------LTGLCNLKCLELSDTQVGSSG--LRHLSGLTNLESINLSFTGISDGSLRKLAGLSSLK  351 (469)
Q Consensus       293 ~~~-------------------~~~~~~L~~L~l~~~~~~~~~--~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~  351 (469)
                      ...                   ...+++|+.|++++|.+....  +..+..+++|++|++++|.+....+. +..+++|+
T Consensus       321 ~~~l~~L~~L~l~~n~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~-~~~l~~L~  399 (570)
T 2z63_A          321 TLKLKSLKRLTFTSNKGGNAFSEVDLPSLEFLDLSRNGLSFKGCCSQSDFGTTSLKYLDLSFNGVITMSSN-FLGLEQLE  399 (570)
T ss_dssp             BCBCSSCCEEEEESCBSCCBCCCCBCTTCCEEECCSSCCBEEEEEEHHHHTCSCCCEEECCSCSEEEEEEE-EETCTTCC
T ss_pred             cccccccCEEeCcCCccccccccccCCCCCEEeCcCCccCccccccccccccCccCEEECCCCcccccccc-ccccCCCC
Confidence            100                   034567777777777665443  45566778888888888776654433 67788888


Q ss_pred             EEEccCCCCCHHHH-HHHhcCCCCCEeecCCCCCChhHHHHhHcCCCCCeeeeCCCCCC-HHHHHHHhcCCCCCeeeccC
Q 012186          352 SLNLDARQITDTGL-AALTSLTGLTHLDLFGARITDSGAAYLRNFKNLRSLEICGGGLT-DAGVKHIKDLSSLTLLNLSQ  429 (469)
Q Consensus       352 ~L~l~~~~~~~~~~-~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~-~~~~~~l~~~~~L~~L~l~~  429 (469)
                      .|++++|.+....+ ..+..+++|++|++++|.+.+..+..+..+++|+.|++++|.++ +..|..+..+++|++|++++
T Consensus       400 ~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~p~~~~~l~~L~~L~l~~  479 (570)
T 2z63_A          400 HLDFQHSNLKQMSEFSVFLSLRNLIYLDISHTHTRVAFNGIFNGLSSLEVLKMAGNSFQENFLPDIFTELRNLTFLDLSQ  479 (570)
T ss_dssp             EEECTTSEEESCTTSCTTTTCTTCCEEECTTSCCEECCTTTTTTCTTCCEEECTTCEEGGGEECSCCTTCTTCCEEECTT
T ss_pred             EEEccCCccccccchhhhhcCCCCCEEeCcCCcccccchhhhhcCCcCcEEECcCCcCccccchhhhhcccCCCEEECCC
Confidence            88888887766433 35678899999999999988888888888999999999999987 45677788899999999999


Q ss_pred             CCCCChhHHHHHHhCcccccccccCCCCCHHH
Q 012186          430 NCNLTDKTLELISGLTGLVSLNVSNSRITSAG  461 (469)
Q Consensus       430 ~~~l~~~~~~~l~~l~~L~~L~l~~~~~~~~~  461 (469)
                      | .++...+..+..+++|+.|++++|+++...
T Consensus       480 n-~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~  510 (570)
T 2z63_A          480 C-QLEQLSPTAFNSLSSLQVLNMASNQLKSVP  510 (570)
T ss_dssp             S-CCCEECTTTTTTCTTCCEEECCSSCCSCCC
T ss_pred             C-ccccCChhhhhcccCCCEEeCCCCcCCCCC
Confidence            9 788888888899999999999999987654

>3a79_B TLR6, VLRB.59, TOLL-like receptor 6, variable lymphocyte recepto; diacyl lipopeptide, innate immunity, Leu repeat, cell membrane, cytoplasmic vesicle; HET: PXS NAG BMA NDG; 2.90A {Mus musculus}

Probab=100.00  E-value=1.3e-35  Score=292.57  Aligned_cols=390  Identities=16%  Similarity=0.139  Sum_probs=280.2

Q ss_pred             CCCccEEEecCCCCChHhhHhhhcCCCCCEEecCCCcccChhHhHhhhCCCCCCEEeCCCCCcCcHHHHHHHhCCCCCCE
Q 012186           56 GSSLLSVDLSGSDVTDSGLIHLKDCSNLQSLDFNFCIQISDGGLEHLRGLSNLTSLSFRRNNAITAQGMKAFAGLINLVK  135 (469)
Q Consensus        56 ~~~l~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~  135 (469)
                      ++++++|++++|.+++..+..|.++++|++|++++| .++...+..|.++++|++|++++|.+.  .+|..  .+++|++
T Consensus        51 ~~~L~~L~Ls~N~i~~~~~~~~~~l~~L~~L~Ls~N-~l~~~~~~~~~~l~~L~~L~Ls~N~l~--~lp~~--~l~~L~~  125 (562)
T 3a79_B           51 PPRTKALSLSQNSISELRMPDISFLSELRVLRLSHN-RIRSLDFHVFLFNQDLEYLDVSHNRLQ--NISCC--PMASLRH  125 (562)
T ss_dssp             CTTCCEEECCSSCCCCCCGGGTTTCTTCCEEECCSC-CCCEECTTTTTTCTTCCEEECTTSCCC--EECSC--CCTTCSE
T ss_pred             CCCcCEEECCCCCccccChhhhccCCCccEEECCCC-CCCcCCHHHhCCCCCCCEEECCCCcCC--ccCcc--ccccCCE
Confidence            378999999999988877788899999999999984 677777788889999999999998753  33433  7889999


Q ss_pred             Eecccccccccc-cccccCCCCccEEEccCCCCCChhhhhcccCCCCCCEEEeccccc--Chhhhhhcc-----------
Q 012186          136 LDLERCTRIHGG-LVNLKGLMKLESLNIKWCNCITDSDMKPLSGLTNLKSLQISCSKV--TDSGIAYLK-----------  201 (469)
Q Consensus       136 L~l~~~~~~~~~-~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~--~~~~~~~l~-----------  201 (469)
                      |++++|...... +..+.++++|++|+++++. +.......+..+ +|+.|++++|.+  ....+..+.           
T Consensus       126 L~Ls~N~l~~l~~p~~~~~l~~L~~L~L~~n~-l~~~~~~~l~~L-~L~~L~L~~n~l~~~~~~~~~l~~l~~~~l~l~l  203 (562)
T 3a79_B          126 LDLSFNDFDVLPVCKEFGNLTKLTFLGLSAAK-FRQLDLLPVAHL-HLSCILLDLVSYHIKGGETESLQIPNTTVLHLVF  203 (562)
T ss_dssp             EECCSSCCSBCCCCGGGGGCTTCCEEEEECSB-CCTTTTGGGTTS-CEEEEEEEESSCCCCSSSCCEEEECCEEEEEEEE
T ss_pred             EECCCCCccccCchHhhcccCcccEEecCCCc-cccCchhhhhhc-eeeEEEeecccccccccCcccccccCcceEEEEe
Confidence            999987544322 3678889999999998844 443333333333 349999988877  433333332           


Q ss_pred             ---------------CCCCCCeeeccCCCCc----hhhHHhhhcCCCCcEEECCCCCCChhHHHHh---hcCCCccEEEc
Q 012186          202 ---------------GLQKLTLLNLEGCPVT----AACLDSLSALGSLFYLNLNRCQLSDDGCEKF---SKIGSLKVLNL  259 (469)
Q Consensus       202 ---------------~l~~L~~L~l~~~~~~----~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~---~~~~~L~~L~l  259 (469)
                                     .+++|+.+++++|...    ......+..+++|+.+++.++.+.......+   ...++|+.|++
T Consensus       204 ~~n~~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~l~~~~~~l~~l~~L~~L~L~~~~l~~~~~~~~~~~~~~~~L~~L~l  283 (562)
T 3a79_B          204 HPNSLFSVQVNMSVNALGHLQLSNIKLNDENCQRLMTFLSELTRGPTLLNVTLQHIETTWKCSVKLFQFFWPRPVEYLNI  283 (562)
T ss_dssp             CSSSCCCCCCEEEESSEEEEEEEEEECCSTTHHHHHHHHHHHHSCSSCEEEEEEEEEECHHHHHHHHHHHTTSSEEEEEE
T ss_pred             cCccchhhhhhhcccccceEEEecccccccccchHHHHHHHHhccCcceEEEecCCcCcHHHHHHHHHhhhcccccEEEE
Confidence                           3456777777766311    1123345666777766666665544322111   22346777777


Q ss_pred             cCCCCchHHHHHh-------------------------------hCCCCCCEEecCCCCCChHHHHHhhCCCCCCEEecc
Q 012186          260 GFNEITDECLVHL-------------------------------KGLTNLESLNLDSCGIGDEGLVNLTGLCNLKCLELS  308 (469)
Q Consensus       260 ~~~~~~~~~~~~~-------------------------------~~l~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~  308 (469)
                      ++|.+.+..+..+                               ....+|+.|+++++.+....  ....+++|++|+++
T Consensus       284 ~~n~l~~~ip~~~~~~~~~~L~~L~~~~~~~~~~~~p~~~~~~~~~~~~L~~L~l~~n~~~~~~--~~~~l~~L~~L~l~  361 (562)
T 3a79_B          284 YNLTITERIDREEFTYSETALKSLMIEHVKNQVFLFSKEALYSVFAEMNIKMLSISDTPFIHMV--CPPSPSSFTFLNFT  361 (562)
T ss_dssp             EEEEECSCCCCCCCCCCSCSCCEEEEEEEEECCCSSCHHHHHHHHHTCCCSEEEEESSCCCCCC--CCSSCCCCCEEECC
T ss_pred             eccEeeccccchhhhcccccchheehhhcccceeecChhhhhhhhccCcceEEEccCCCccccc--CccCCCCceEEECC
Confidence            6665543222211                               11245777777777654321  12578899999999


Q ss_pred             CCCCChhhHHHhhCCCCCcEEecccCCCCc--hHHHhhhCCCCCcEEEccCCCCCH-HHHHHHhcCCCCCEeecCCCCCC
Q 012186          309 DTQVGSSGLRHLSGLTNLESINLSFTGISD--GSLRKLAGLSSLKSLNLDARQITD-TGLAALTSLTGLTHLDLFGARIT  385 (469)
Q Consensus       309 ~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~--~~~~~~~~~~~L~~L~l~~~~~~~-~~~~~l~~~~~L~~L~l~~~~~~  385 (469)
                      +|.+....+..++.+++|+.|++++|.+..  ..+..+..+++|+.|++++|.++. .....+..+++|++|++++|+++
T Consensus       362 ~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~~l~~L~~L~l~~n~l~  441 (562)
T 3a79_B          362 QNVFTDSVFQGCSTLKRLQTLILQRNGLKNFFKVALMTKNMSSLETLDVSLNSLNSHAYDRTCAWAESILVLNLSSNMLT  441 (562)
T ss_dssp             SSCCCTTTTTTCCSCSSCCEEECCSSCCCBTTHHHHTTTTCTTCCEEECTTSCCBSCCSSCCCCCCTTCCEEECCSSCCC
T ss_pred             CCccccchhhhhcccCCCCEEECCCCCcCCcccchhhhcCCCCCCEEECCCCcCCCccChhhhcCcccCCEEECCCCCCC
Confidence            999888777778899999999999998886  345668889999999999999887 43445667899999999999998


Q ss_pred             hhHHHHhHcCCCCCeeeeCCCCCCHHHHHHHhcCCCCCeeeccCCCCCChhHHHHHHhCcccccccccCCCCC
Q 012186          386 DSGAAYLRNFKNLRSLEICGGGLTDAGVKHIKDLSSLTLLNLSQNCNLTDKTLELISGLTGLVSLNVSNSRIT  458 (469)
Q Consensus       386 ~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~l~~~~~~~l~~l~~L~~L~l~~~~~~  458 (469)
                      +..+..+.  ++|+.|++++|+++.. |..+..+++|++|++++| .++...+..+..+++|+.|++++|++.
T Consensus       442 ~~~~~~l~--~~L~~L~L~~N~l~~i-p~~~~~l~~L~~L~L~~N-~l~~l~~~~~~~l~~L~~L~l~~N~~~  510 (562)
T 3a79_B          442 GSVFRCLP--PKVKVLDLHNNRIMSI-PKDVTHLQALQELNVASN-QLKSVPDGVFDRLTSLQYIWLHDNPWD  510 (562)
T ss_dssp             GGGGSSCC--TTCSEEECCSSCCCCC-CTTTTSSCCCSEEECCSS-CCCCCCTTSTTTCTTCCCEECCSCCBC
T ss_pred             cchhhhhc--CcCCEEECCCCcCccc-ChhhcCCCCCCEEECCCC-CCCCCCHHHHhcCCCCCEEEecCCCcC
Confidence            76655432  7999999999999865 555668999999999999 788655555888999999999999986

>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A

Probab=100.00  E-value=3.2e-33  Score=268.92  Aligned_cols=340  Identities=28%  Similarity=0.342  Sum_probs=254.3

Q ss_pred             CCccEEEecCCCCChHhhHhhhcCCCCCEEecCCCcccChhHhHhhhCCCCCCEEeCCCCCcCcHHHHHHHhCCCCCCEE
Q 012186           57 SSLLSVDLSGSDVTDSGLIHLKDCSNLQSLDFNFCIQISDGGLEHLRGLSNLTSLSFRRNNAITAQGMKAFAGLINLVKL  136 (469)
Q Consensus        57 ~~l~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L  136 (469)
                      +++++|+++++.+.. ++ .+..+++|++|++++| .++...+  +.++++|++|++++|.+. ...+  +..+++|++|
T Consensus        46 ~~l~~L~l~~~~i~~-l~-~~~~l~~L~~L~Ls~n-~l~~~~~--~~~l~~L~~L~l~~n~l~-~~~~--~~~l~~L~~L  117 (466)
T 1o6v_A           46 DQVTTLQADRLGIKS-ID-GVEYLNNLTQINFSNN-QLTDITP--LKNLTKLVDILMNNNQIA-DITP--LANLTNLTGL  117 (466)
T ss_dssp             HTCCEEECCSSCCCC-CT-TGGGCTTCCEEECCSS-CCCCCGG--GTTCTTCCEEECCSSCCC-CCGG--GTTCTTCCEE
T ss_pred             ccccEEecCCCCCcc-Cc-chhhhcCCCEEECCCC-ccCCchh--hhccccCCEEECCCCccc-cChh--hcCCCCCCEE
Confidence            478999999888764 33 4778899999999885 4555433  888999999999988753 3223  8889999999


Q ss_pred             ecccccccccccccccCCCCccEEEccCCCCCChhhhhcccCCCCCCEEEecccccChhhhhhccCCCCCCeeeccCCCC
Q 012186          137 DLERCTRIHGGLVNLKGLMKLESLNIKWCNCITDSDMKPLSGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPV  216 (469)
Q Consensus       137 ~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~  216 (469)
                      ++++|. +...+ .+.++++|++|++++|. +..  ...+..+++|+.|++.+ .+...  ..+..+++|++|++++|.+
T Consensus       118 ~L~~n~-l~~~~-~~~~l~~L~~L~l~~n~-l~~--~~~~~~l~~L~~L~l~~-~~~~~--~~~~~l~~L~~L~l~~n~l  189 (466)
T 1o6v_A          118 TLFNNQ-ITDID-PLKNLTNLNRLELSSNT-ISD--ISALSGLTSLQQLSFGN-QVTDL--KPLANLTTLERLDISSNKV  189 (466)
T ss_dssp             ECCSSC-CCCCG-GGTTCTTCSEEEEEEEE-ECC--CGGGTTCTTCSEEEEEE-SCCCC--GGGTTCTTCCEEECCSSCC
T ss_pred             ECCCCC-CCCCh-HHcCCCCCCEEECCCCc-cCC--ChhhccCCcccEeecCC-cccCc--hhhccCCCCCEEECcCCcC
Confidence            998874 33333 37888999999998854 332  23577888899998863 33332  2377888889999988877


Q ss_pred             chhhHHhhhcCCCCcEEECCCCCCChhHHHHhhcCCCccEEEccCCCCchHHHHHhhCCCCCCEEecCCCCCChHHHHHh
Q 012186          217 TAACLDSLSALGSLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNLDSCGIGDEGLVNL  296 (469)
Q Consensus       217 ~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~  296 (469)
                      ...  ..+..+++|++|++++|.+....+  +..+++|+.|++++|.+.+.  ..+..+++|+.|++++|.+....+  +
T Consensus       190 ~~~--~~l~~l~~L~~L~l~~n~l~~~~~--~~~l~~L~~L~l~~n~l~~~--~~l~~l~~L~~L~l~~n~l~~~~~--~  261 (466)
T 1o6v_A          190 SDI--SVLAKLTNLESLIATNNQISDITP--LGILTNLDELSLNGNQLKDI--GTLASLTNLTDLDLANNQISNLAP--L  261 (466)
T ss_dssp             CCC--GGGGGCTTCSEEECCSSCCCCCGG--GGGCTTCCEEECCSSCCCCC--GGGGGCTTCSEEECCSSCCCCCGG--G
T ss_pred             CCC--hhhccCCCCCEEEecCCccccccc--ccccCCCCEEECCCCCcccc--hhhhcCCCCCEEECCCCccccchh--h
Confidence            664  347788888888888888776543  66788888888888887753  356778888888888887765433  6


Q ss_pred             hCCCCCCEEeccCCCCChhhHHHhhCCCCCcEEecccCCCCchHHHhhhCCCCCcEEEccCCCCCHHHHHHHhcCCCCCE
Q 012186          297 TGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISDGSLRKLAGLSSLKSLNLDARQITDTGLAALTSLTGLTH  376 (469)
Q Consensus       297 ~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~  376 (469)
                      ..+++|+.|++++|.+....+  +..+++|+.|++++|.+.+..+  +..+++|+.|++++|.+++..+  +..+++|++
T Consensus       262 ~~l~~L~~L~l~~n~l~~~~~--~~~l~~L~~L~L~~n~l~~~~~--~~~l~~L~~L~L~~n~l~~~~~--~~~l~~L~~  335 (466)
T 1o6v_A          262 SGLTKLTELKLGANQISNISP--LAGLTALTNLELNENQLEDISP--ISNLKNLTYLTLYFNNISDISP--VSSLTKLQR  335 (466)
T ss_dssp             TTCTTCSEEECCSSCCCCCGG--GTTCTTCSEEECCSSCCSCCGG--GGGCTTCSEEECCSSCCSCCGG--GGGCTTCCE
T ss_pred             hcCCCCCEEECCCCccCcccc--ccCCCccCeEEcCCCcccCchh--hcCCCCCCEEECcCCcCCCchh--hccCccCCE
Confidence            778888888888887776543  6778888888888887776543  6677888888888888776544  667888888


Q ss_pred             eecCCCCCChhHHHHhHcCCCCCeeeeCCCCCCHHHHHHHhcCCCCCeeeccCC
Q 012186          377 LDLFGARITDSGAAYLRNFKNLRSLEICGGGLTDAGVKHIKDLSSLTLLNLSQN  430 (469)
Q Consensus       377 L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~  430 (469)
                      |++++|++++.  ..+..+++|+.|++++|++++..|  +..+++|+.|++++|
T Consensus       336 L~l~~n~l~~~--~~l~~l~~L~~L~l~~n~l~~~~~--~~~l~~L~~L~l~~n  385 (466)
T 1o6v_A          336 LFFYNNKVSDV--SSLANLTNINWLSAGHNQISDLTP--LANLTRITQLGLNDQ  385 (466)
T ss_dssp             EECCSSCCCCC--GGGTTCTTCCEEECCSSCCCBCGG--GTTCTTCCEEECCCE
T ss_pred             eECCCCccCCc--hhhccCCCCCEEeCCCCccCccch--hhcCCCCCEEeccCC
Confidence            88888887775  356778888888888888877665  677888888888888

>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron}

Probab=100.00  E-value=3.3e-36  Score=304.53  Aligned_cols=370  Identities=15%  Similarity=0.101  Sum_probs=287.5

Q ss_pred             hhHhhhcCCCCCEEecCCCcccCh-----------------hHhHhhh--CCCCCCEEeCCCCCcCcHHHHHHHhCCCCC
Q 012186           73 GLIHLKDCSNLQSLDFNFCIQISD-----------------GGLEHLR--GLSNLTSLSFRRNNAITAQGMKAFAGLINL  133 (469)
Q Consensus        73 ~~~~~~~~~~L~~L~l~~~~~~~~-----------------~~~~~l~--~~~~L~~L~l~~~~~~~~~~~~~~~~l~~L  133 (469)
                      +|..+.++++|+.|++++| .++.                 ..|..++  ++++|++|++++|.. ....|..+.++++|
T Consensus       440 IP~~l~~L~~L~~L~Ls~N-~Lsg~~i~~~~~~~s~n~~~g~iP~~l~f~~L~~L~~L~Ls~N~l-~~~iP~~l~~L~~L  517 (876)
T 4ecn_A          440 ISKAIQRLTKLQIIYFANS-PFTYDNIAVDWEDANSDYAKQYENEELSWSNLKDLTDVELYNCPN-MTQLPDFLYDLPEL  517 (876)
T ss_dssp             ECGGGGGCTTCCEEEEESC-CCCGGGBSSSCSCTTSHHHHHHTTSCCCGGGCTTCCEEEEESCTT-CCSCCGGGGGCSSC
T ss_pred             hhHHHhcCCCCCEEECcCC-cCCCCcccccccccccccccccCChhhhhccCCCCCEEECcCCCC-CccChHHHhCCCCC
Confidence            6778899999999999995 5666                 3677776  999999999999974 45567889999999


Q ss_pred             CEEeccccccccc--ccccc-------cCCCCccEEEccCCCCCChhhhh--cccCCCCCCEEEecccccChhhhhhccC
Q 012186          134 VKLDLERCTRIHG--GLVNL-------KGLMKLESLNIKWCNCITDSDMK--PLSGLTNLKSLQISCSKVTDSGIAYLKG  202 (469)
Q Consensus       134 ~~L~l~~~~~~~~--~~~~l-------~~l~~L~~L~l~~~~~~~~~~~~--~~~~~~~L~~L~l~~~~~~~~~~~~l~~  202 (469)
                      ++|++++|..+..  .|..+       ..+++|++|++++|. +. ..+.  .+..+++|+.|++++|.+... + .+..
T Consensus       518 ~~L~Ls~N~~lsg~~iP~~i~~L~~~~~~l~~L~~L~Ls~N~-L~-~ip~~~~l~~L~~L~~L~Ls~N~l~~l-p-~~~~  593 (876)
T 4ecn_A          518 QSLNIACNRGISAAQLKADWTRLADDEDTGPKIQIFYMGYNN-LE-EFPASASLQKMVKLGLLDCVHNKVRHL-E-AFGT  593 (876)
T ss_dssp             CEEECTTCTTSCHHHHHHHHHHHHHCTTTTTTCCEEECCSSC-CC-BCCCHHHHTTCTTCCEEECTTSCCCBC-C-CCCT
T ss_pred             CEEECcCCCCcccccchHHHHhhhhcccccCCccEEEeeCCc-CC-ccCChhhhhcCCCCCEEECCCCCcccc-h-hhcC
Confidence            9999999863443  44433       455699999999965 44 3455  789999999999999998843 3 7899


Q ss_pred             CCCCCeeeccCCCCchhhHHhhhcCCC-CcEEECCCCCCChhHHHHhhcCC--CccEEEccCCCCchHHHHH---hh--C
Q 012186          203 LQKLTLLNLEGCPVTAACLDSLSALGS-LFYLNLNRCQLSDDGCEKFSKIG--SLKVLNLGFNEITDECLVH---LK--G  274 (469)
Q Consensus       203 l~~L~~L~l~~~~~~~~~~~~~~~~~~-L~~L~l~~~~~~~~~~~~~~~~~--~L~~L~l~~~~~~~~~~~~---~~--~  274 (469)
                      +++|+.|++++|.+. ..+..+..+++ |+.|++++|.+. ..+..+...+  +|+.|++++|.+.+..+..   +.  .
T Consensus       594 L~~L~~L~Ls~N~l~-~lp~~l~~l~~~L~~L~Ls~N~L~-~lp~~~~~~~~~~L~~L~Ls~N~l~g~ip~l~~~l~~~~  671 (876)
T 4ecn_A          594 NVKLTDLKLDYNQIE-EIPEDFCAFTDQVEGLGFSHNKLK-YIPNIFNAKSVYVMGSVDFSYNKIGSEGRNISCSMDDYK  671 (876)
T ss_dssp             TSEESEEECCSSCCS-CCCTTSCEECTTCCEEECCSSCCC-SCCSCCCTTCSSCEEEEECCSSCTTTTSSSCSSCTTTCC
T ss_pred             CCcceEEECcCCccc-cchHHHhhccccCCEEECcCCCCC-cCchhhhccccCCCCEEECcCCcCCCccccchhhhcccc
Confidence            999999999999988 45677888998 999999999988 4455555544  4999999999987643321   12  3


Q ss_pred             CCCCCEEecCCCCCChHHHHHhhCCCCCCEEeccCCCCChhhHHHhh-------CCCCCcEEecccCCCCchHHHhhh--
Q 012186          275 LTNLESLNLDSCGIGDEGLVNLTGLCNLKCLELSDTQVGSSGLRHLS-------GLTNLESINLSFTGISDGSLRKLA--  345 (469)
Q Consensus       275 l~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~-------~~~~L~~L~l~~~~~~~~~~~~~~--  345 (469)
                      +++|+.|++++|.+...+...+..+++|+.|++++|.+.......+.       ++++|+.|++++|.+.. .+..+.  
T Consensus       672 ~~~L~~L~Ls~N~L~~lp~~~~~~l~~L~~L~Ls~N~L~~ip~~~~~~~~~~l~nl~~L~~L~Ls~N~L~~-lp~~l~~~  750 (876)
T 4ecn_A          672 GINASTVTLSYNEIQKFPTELFATGSPISTIILSNNLMTSIPENSLKPKDGNYKNTYLLTTIDLRFNKLTS-LSDDFRAT  750 (876)
T ss_dssp             CCCEEEEECCSSCCCSCCHHHHHTTCCCSEEECCSCCCSCCCTTSSSCTTSCCTTGGGCCEEECCSSCCCC-CCGGGSTT
T ss_pred             CCCcCEEEccCCcCCccCHHHHccCCCCCEEECCCCcCCccChHHhccccccccccCCccEEECCCCCCcc-chHHhhhc
Confidence            45899999999998865555566899999999999988754333332       22399999999999884 455665  


Q ss_pred             CCCCCcEEEccCCCCCHHHHHHHhcCCCCCEeecCC------CCCChhHHHHhHcCCCCCeeeeCCCCCCHHHHHHHhcC
Q 012186          346 GLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLFG------ARITDSGAAYLRNFKNLRSLEICGGGLTDAGVKHIKDL  419 (469)
Q Consensus       346 ~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~------~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~  419 (469)
                      .+++|+.|++++|.++.. +..+..+++|+.|++++      |.+.+.+|..+..+++|+.|++++|.+.. .|..+  .
T Consensus       751 ~l~~L~~L~Ls~N~L~~l-p~~l~~L~~L~~L~Ls~N~~ls~N~l~~~ip~~l~~L~~L~~L~Ls~N~L~~-Ip~~l--~  826 (876)
T 4ecn_A          751 TLPYLSNMDVSYNCFSSF-PTQPLNSSQLKAFGIRHQRDAEGNRILRQWPTGITTCPSLIQLQIGSNDIRK-VDEKL--T  826 (876)
T ss_dssp             TCTTCCEEECCSSCCSSC-CCGGGGCTTCCEEECCCCBCTTCCBCCCCCCTTGGGCSSCCEEECCSSCCCB-CCSCC--C
T ss_pred             cCCCcCEEEeCCCCCCcc-chhhhcCCCCCEEECCCCCCcccccccccChHHHhcCCCCCEEECCCCCCCc-cCHhh--c
Confidence            899999999999999884 56677999999999976      77888889999999999999999999954 45554  3


Q ss_pred             CCCCeeeccCCCCCChhHHHHHHhCcccccccccCCC
Q 012186          420 SSLTLLNLSQNCNLTDKTLELISGLTGLVSLNVSNSR  456 (469)
Q Consensus       420 ~~L~~L~l~~~~~l~~~~~~~l~~l~~L~~L~l~~~~  456 (469)
                      ++|+.|+|++| .+....+..+.....+..+.+.+++
T Consensus       827 ~~L~~LdLs~N-~l~~i~~~~~~~~~~~~~~~L~~n~  862 (876)
T 4ecn_A          827 PQLYILDIADN-PNISIDVTSVCPYIEAGMYVLLYDK  862 (876)
T ss_dssp             SSSCEEECCSC-TTCEEECGGGHHHHHTTCCEEECCT
T ss_pred             CCCCEEECCCC-CCCccChHHccccccchheeecCCC
Confidence            79999999999 5555443333333333444444433

>2p1m_B Transport inhibitor response 1 protein; F-BOX, leucine rich repeat, signaling protein; HET: IHP; 1.80A {Arabidopsis thaliana} PDB: 2p1n_B* 2p1o_B* 2p1p_B* 2p1q_B* 3c6n_B* 3c6o_B* 3c6p_B*

Probab=100.00  E-value=6.1e-32  Score=268.96  Aligned_cols=459  Identities=21%  Similarity=0.215  Sum_probs=323.2

Q ss_pred             CCcHHHHHHHHHHHH-hccCCCH--HhHHhh--ccCceeEEecCCCCCCCHHHHHHHHhcCCCccEEEecCCCCCh----
Q 012186            1 MLPRDISQQIFNELV-YSRCLTE--VSLEAF--RDCALQDLCLGQYPGVNDKWMDVIASQGSSLLSVDLSGSDVTD----   71 (469)
Q Consensus         1 ~~~~e~~~~~~~~lv-~~~~~~~--~~~~~~--~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~l~~L~l~~~~~~~----   71 (469)
                      .+|+|+...+|..|- .+.....  +.....  .....+++.+..+......   ....+.+++++|+++++....    
T Consensus         8 ~LPdevL~~If~~L~~~~d~~~~s~vck~W~~~~~~~~~~l~~~~~~~~~~~---~~~~~~~~L~~L~L~~~~~~~~~~l   84 (594)
T 2p1m_B            8 SFPEEVLEHVFSFIQLDKDRNSVSLVCKSWYEIERWCRRKVFIGNCYAVSPA---TVIRRFPKVRSVELKGKPHFADFNL   84 (594)
T ss_dssp             --CHHHHHHHHHTCCCHHHHHHHHTSCHHHHHHHHHHCCEEEESSTTSSCHH---HHHHHCTTCCEEEEECSCGGGGGTC
T ss_pred             hCCHHHHHHHHhhcCCchhHHHHHHHHHHHHHhhhhhceEEeeccccccCHH---HHHhhCCCceEEeccCCCchhhccc
Confidence            379999999997654 2111100  000000  0112445666665544433   344567899999999864211    


Q ss_pred             -----------HhhHhhhcCCCCCEEecCCCcccChhHhHhhh-CCCCCCEEeCCCCCcCcHH-HHHHHhCCCCCCEEec
Q 012186           72 -----------SGLIHLKDCSNLQSLDFNFCIQISDGGLEHLR-GLSNLTSLSFRRNNAITAQ-GMKAFAGLINLVKLDL  138 (469)
Q Consensus        72 -----------~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~l~-~~~~L~~L~l~~~~~~~~~-~~~~~~~l~~L~~L~l  138 (469)
                                 .+......+++|+.|++++| .+++..+..+. .+++|++|++++|..++.. .+.....+++|++|++
T Consensus        85 ~~~~~~~~~~~~l~~l~~~~~~L~~L~L~~~-~~~~~~~~~l~~~~~~L~~L~L~~~~~~~~~~l~~~~~~~~~L~~L~L  163 (594)
T 2p1m_B           85 VPDGWGGYVYPWIEAMSSSYTWLEEIRLKRM-VVTDDCLELIAKSFKNFKVLVLSSCEGFSTDGLAAIAATCRNLKELDL  163 (594)
T ss_dssp             SCTTSCCBCHHHHHHHHHHCTTCCEEEEESC-BCCHHHHHHHHHHCTTCCEEEEESCEEEEHHHHHHHHHHCTTCCEEEC
T ss_pred             ccccccchhhHHHHHHHHhCCCCCeEEeeCc-EEcHHHHHHHHHhCCCCcEEeCCCcCCCCHHHHHHHHHhCCCCCEEeC
Confidence                       11233468999999999996 57887777775 7999999999999545544 4455558999999999


Q ss_pred             cccccccccccc----ccCCCCccEEEccCCC-CCChhhhhc-ccCCCCCCEEEecccccChhhhhhccCCCCCCeeecc
Q 012186          139 ERCTRIHGGLVN----LKGLMKLESLNIKWCN-CITDSDMKP-LSGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLE  212 (469)
Q Consensus       139 ~~~~~~~~~~~~----l~~l~~L~~L~l~~~~-~~~~~~~~~-~~~~~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~  212 (469)
                      ++|......+..    ...+++|++|++++|. .+....... ...+++|++|++.++.........+..+++|+.|+++
T Consensus       164 ~~~~i~~~~~~~l~~~~~~~~~L~~L~l~~~~~~~~~~~l~~l~~~~~~L~~L~L~~~~~~~~l~~~~~~~~~L~~L~l~  243 (594)
T 2p1m_B          164 RESDVDDVSGHWLSHFPDTYTSLVSLNISCLASEVSFSALERLVTRCPNLKSLKLNRAVPLEKLATLLQRAPQLEELGTG  243 (594)
T ss_dssp             TTCEEECCCGGGGGGSCTTCCCCCEEECTTCCSCCCHHHHHHHHHHCTTCCEEECCTTSCHHHHHHHHHHCTTCSEEECS
T ss_pred             cCCccCCcchHHHHHHhhcCCcCcEEEecccCCcCCHHHHHHHHHhCCCCcEEecCCCCcHHHHHHHHhcCCcceEcccc
Confidence            998633333222    3477899999999875 233222222 3457999999999883333355667889999999977


Q ss_pred             CCCC--c----hhhHHhhhcCCCCcEEE-CCCCCCChhHHHHhhcCCCccEEEccCCCCchHHHH-HhhCCCCCCEEecC
Q 012186          213 GCPV--T----AACLDSLSALGSLFYLN-LNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLV-HLKGLTNLESLNLD  284 (469)
Q Consensus       213 ~~~~--~----~~~~~~~~~~~~L~~L~-l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~-~~~~l~~L~~L~l~  284 (469)
                      ++..  .    ...+..+.++++|+.+. +.... ....+..+..+++|+.|++++|.+++.... .+..+++|+.|++.
T Consensus       244 ~~~~~~~~~~~~~l~~~l~~~~~L~~Ls~~~~~~-~~~l~~~~~~~~~L~~L~L~~~~l~~~~l~~~~~~~~~L~~L~l~  322 (594)
T 2p1m_B          244 GYTAEVRPDVYSGLSVALSGCKELRCLSGFWDAV-PAYLPAVYSVCSRLTTLNLSYATVQSYDLVKLLCQCPKLQRLWVL  322 (594)
T ss_dssp             BCCCCCCHHHHHHHHHHHHTCTTCCEEECCBTCC-GGGGGGGHHHHTTCCEEECTTCCCCHHHHHHHHTTCTTCCEEEEE
T ss_pred             cccCccchhhHHHHHHHHhcCCCcccccCCcccc-hhhHHHHHHhhCCCCEEEccCCCCCHHHHHHHHhcCCCcCEEeCc
Confidence            6532  1    12344678899999993 43322 122333445789999999999988765433 35788999999999


Q ss_pred             CCCCChHHHHHhh-CCCCCCEEeccC---------CCCChhhHHHhh-CCCCCcEEecccCCCCchHHHhhh-CCCCCcE
Q 012186          285 SCGIGDEGLVNLT-GLCNLKCLELSD---------TQVGSSGLRHLS-GLTNLESINLSFTGISDGSLRKLA-GLSSLKS  352 (469)
Q Consensus       285 ~~~~~~~~~~~~~-~~~~L~~L~l~~---------~~~~~~~~~~~~-~~~~L~~L~l~~~~~~~~~~~~~~-~~~~L~~  352 (469)
                      +| +.......+. .+++|++|++.+         +.++......+. .+++|+.|.+..+.+++.....+. .+++|+.
T Consensus       323 ~~-~~~~~l~~l~~~~~~L~~L~L~~~~~~g~~~~~~l~~~~l~~l~~~~~~L~~L~~~~~~l~~~~~~~l~~~~~~L~~  401 (594)
T 2p1m_B          323 DY-IEDAGLEVLASTCKDLRELRVFPSEPFVMEPNVALTEQGLVSVSMGCPKLESVLYFCRQMTNAALITIARNRPNMTR  401 (594)
T ss_dssp             GG-GHHHHHHHHHHHCTTCCEEEEECSCTTCSSCSSCCCHHHHHHHHHHCTTCCEEEEEESCCCHHHHHHHHHHCTTCCE
T ss_pred             Cc-cCHHHHHHHHHhCCCCCEEEEecCcccccccCCCCCHHHHHHHHHhchhHHHHHHhcCCcCHHHHHHHHhhCCCcce
Confidence            88 5444444443 589999999833         456655555554 589999998888899887777776 5899999


Q ss_pred             EEcc--C----CCCC----HHH-HHHHhcCCCCCEeecCCCCCChhHHHHhHc-CCCCCeeeeCCCCCCHHHHHHH-hcC
Q 012186          353 LNLD--A----RQIT----DTG-LAALTSLTGLTHLDLFGARITDSGAAYLRN-FKNLRSLEICGGGLTDAGVKHI-KDL  419 (469)
Q Consensus       353 L~l~--~----~~~~----~~~-~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~-~~~L~~L~l~~~~~~~~~~~~l-~~~  419 (469)
                      |+++  +    +.++    ... ...+..+++|++|++++ .+++..+..+.. +++|+.|++++|.+++..+..+ .++
T Consensus       402 L~L~~~~~~~~~~l~~~~~~~~~~~l~~~~~~L~~L~L~~-~l~~~~~~~l~~~~~~L~~L~L~~~~i~~~~~~~l~~~~  480 (594)
T 2p1m_B          402 FRLCIIEPKAPDYLTLEPLDIGFGAIVEHCKDLRRLSLSG-LLTDKVFEYIGTYAKKMEMLSVAFAGDSDLGMHHVLSGC  480 (594)
T ss_dssp             EEEEESSTTCCCTTTCCCTHHHHHHHHHHCTTCCEEECCS-SCCHHHHHHHHHHCTTCCEEEEESCCSSHHHHHHHHHHC
T ss_pred             eEeecccCCCcccccCCchhhHHHHHHhhCCCccEEeecC-cccHHHHHHHHHhchhccEeeccCCCCcHHHHHHHHhcC
Confidence            9998  3    5666    222 23466899999999988 788877777765 8999999999999998877776 679


Q ss_pred             CCCCeeeccCCCCCChhHHHH-HHhCcccccccccCCCCCHHHHHhhhh
Q 012186          420 SSLTLLNLSQNCNLTDKTLEL-ISGLTGLVSLNVSNSRITSAGLRHLNH  467 (469)
Q Consensus       420 ~~L~~L~l~~~~~l~~~~~~~-l~~l~~L~~L~l~~~~~~~~~~~~l~~  467 (469)
                      ++|++|++++| .++...+.. +..+++|+.|++++|++++.|++.+++
T Consensus       481 ~~L~~L~L~~n-~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~l~~  528 (594)
T 2p1m_B          481 DSLRKLEIRDC-PFGDKALLANASKLETMRSLWMSSCSVSFGACKLLGQ  528 (594)
T ss_dssp             TTCCEEEEESC-SCCHHHHHHTGGGGGGSSEEEEESSCCBHHHHHHHHH
T ss_pred             CCcCEEECcCC-CCcHHHHHHHHHhCCCCCEEeeeCCCCCHHHHHHHHH
Confidence            99999999999 557666553 346899999999999999999998854

>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A

Probab=100.00  E-value=2.1e-32  Score=263.12  Aligned_cols=345  Identities=29%  Similarity=0.406  Sum_probs=179.0

Q ss_pred             CCCCCEEecCCCcccChhHhHhhhCCCCCCEEeCCCCCcCcHHHHHHHhCCCCCCEEecccccccccccccccCCCCccE
Q 012186           80 CSNLQSLDFNFCIQISDGGLEHLRGLSNLTSLSFRRNNAITAQGMKAFAGLINLVKLDLERCTRIHGGLVNLKGLMKLES  159 (469)
Q Consensus        80 ~~~L~~L~l~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~  159 (469)
                      +++++.|++.++ .+..  ...+..+++|++|++++|.+. ...+  +..+++|++|++++|. +...+. +.++++|++
T Consensus        45 l~~l~~L~l~~~-~i~~--l~~~~~l~~L~~L~Ls~n~l~-~~~~--~~~l~~L~~L~l~~n~-l~~~~~-~~~l~~L~~  116 (466)
T 1o6v_A           45 LDQVTTLQADRL-GIKS--IDGVEYLNNLTQINFSNNQLT-DITP--LKNLTKLVDILMNNNQ-IADITP-LANLTNLTG  116 (466)
T ss_dssp             HHTCCEEECCSS-CCCC--CTTGGGCTTCCEEECCSSCCC-CCGG--GTTCTTCCEEECCSSC-CCCCGG-GTTCTTCCE
T ss_pred             hccccEEecCCC-CCcc--CcchhhhcCCCEEECCCCccC-Cchh--hhccccCCEEECCCCc-cccChh-hcCCCCCCE
Confidence            445556665553 2322  123455556666666655432 2112  5556666666665543 222222 555666666


Q ss_pred             EEccCCCCCChhhhhcccCCCCCCEEEecccccChhhhhhccCCCCCCeeeccCCCCchhhHHhhhcCCCCcEEECCCCC
Q 012186          160 LNIKWCNCITDSDMKPLSGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACLDSLSALGSLFYLNLNRCQ  239 (469)
Q Consensus       160 L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~  239 (469)
                      |++++|. +....  .+..+++|++|++++|.+...  ..+..+++|+.|++.+ .+...  ..+..+++|+.|++++|.
T Consensus       117 L~L~~n~-l~~~~--~~~~l~~L~~L~l~~n~l~~~--~~~~~l~~L~~L~l~~-~~~~~--~~~~~l~~L~~L~l~~n~  188 (466)
T 1o6v_A          117 LTLFNNQ-ITDID--PLKNLTNLNRLELSSNTISDI--SALSGLTSLQQLSFGN-QVTDL--KPLANLTTLERLDISSNK  188 (466)
T ss_dssp             EECCSSC-CCCCG--GGTTCTTCSEEEEEEEEECCC--GGGTTCTTCSEEEEEE-SCCCC--GGGTTCTTCCEEECCSSC
T ss_pred             EECCCCC-CCCCh--HHcCCCCCCEEECCCCccCCC--hhhccCCcccEeecCC-cccCc--hhhccCCCCCEEECcCCc
Confidence            6665533 22221  255556666666655555432  2355555666665542 22221  125555666666666655


Q ss_pred             CChhHHHHhhcCCCccEEEccCCCCchHHHHHhhCCCCCCEEecCCCCCChHHHHHhhCCCCCCEEeccCCCCChhhHHH
Q 012186          240 LSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNLDSCGIGDEGLVNLTGLCNLKCLELSDTQVGSSGLRH  319 (469)
Q Consensus       240 ~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~  319 (469)
                      +...  ..+..+++|+.|++++|.+.+..+  +..+++|+.|++++|.+...  ..+..+++|+.|++++|.+....+  
T Consensus       189 l~~~--~~l~~l~~L~~L~l~~n~l~~~~~--~~~l~~L~~L~l~~n~l~~~--~~l~~l~~L~~L~l~~n~l~~~~~--  260 (466)
T 1o6v_A          189 VSDI--SVLAKLTNLESLIATNNQISDITP--LGILTNLDELSLNGNQLKDI--GTLASLTNLTDLDLANNQISNLAP--  260 (466)
T ss_dssp             CCCC--GGGGGCTTCSEEECCSSCCCCCGG--GGGCTTCCEEECCSSCCCCC--GGGGGCTTCSEEECCSSCCCCCGG--
T ss_pred             CCCC--hhhccCCCCCEEEecCCccccccc--ccccCCCCEEECCCCCcccc--hhhhcCCCCCEEECCCCccccchh--
Confidence            5432  234555566666666555554322  44455566666665555432  234455566666666655544332  


Q ss_pred             hhCCCCCcEEecccCCCCchHHHhhhCCCCCcEEEccCCCCCHHHHHHHhcCCCCCEeecCCCCCChhHHHHhHcCCCCC
Q 012186          320 LSGLTNLESINLSFTGISDGSLRKLAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLFGARITDSGAAYLRNFKNLR  399 (469)
Q Consensus       320 ~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~  399 (469)
                      +..+++|+.|++++|.+....+  +..+++|+.|++++|.++...+  +..+++|+.|++++|.+++..+  +..+++|+
T Consensus       261 ~~~l~~L~~L~l~~n~l~~~~~--~~~l~~L~~L~L~~n~l~~~~~--~~~l~~L~~L~L~~n~l~~~~~--~~~l~~L~  334 (466)
T 1o6v_A          261 LSGLTKLTELKLGANQISNISP--LAGLTALTNLELNENQLEDISP--ISNLKNLTYLTLYFNNISDISP--VSSLTKLQ  334 (466)
T ss_dssp             GTTCTTCSEEECCSSCCCCCGG--GTTCTTCSEEECCSSCCSCCGG--GGGCTTCSEEECCSSCCSCCGG--GGGCTTCC
T ss_pred             hhcCCCCCEEECCCCccCcccc--ccCCCccCeEEcCCCcccCchh--hcCCCCCCEEECcCCcCCCchh--hccCccCC
Confidence            4555666666666665554333  4555666666666655554322  4555666666666665555443  44556666


Q ss_pred             eeeeCCCCCCHHHHHHHhcCCCCCeeeccCCCCCChhHHHHHHhCcccccccccCCCCCH
Q 012186          400 SLEICGGGLTDAGVKHIKDLSSLTLLNLSQNCNLTDKTLELISGLTGLVSLNVSNSRITS  459 (469)
Q Consensus       400 ~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~l~~~~~~~l~~l~~L~~L~l~~~~~~~  459 (469)
                      .|++++|.+++.  ..+..+++|+.|++++| .+.+..|  +..+++|+.|++++|+++.
T Consensus       335 ~L~l~~n~l~~~--~~l~~l~~L~~L~l~~n-~l~~~~~--~~~l~~L~~L~l~~n~~~~  389 (466)
T 1o6v_A          335 RLFFYNNKVSDV--SSLANLTNINWLSAGHN-QISDLTP--LANLTRITQLGLNDQAWTN  389 (466)
T ss_dssp             EEECCSSCCCCC--GGGTTCTTCCEEECCSS-CCCBCGG--GTTCTTCCEEECCCEEEEC
T ss_pred             EeECCCCccCCc--hhhccCCCCCEEeCCCC-ccCccch--hhcCCCCCEEeccCCcccC
Confidence            666666655554  23455566666666666 4554444  5555666666666555443

>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B}

Probab=100.00  E-value=6.6e-32  Score=250.02  Aligned_cols=307  Identities=29%  Similarity=0.346  Sum_probs=183.7

Q ss_pred             hCCCCCCEEeCCCCCcCcHHHHHHHhCCCCCCEEecccccccccccccccCCCCccEEEccCCCCCChhhhhcccCCCCC
Q 012186          103 RGLSNLTSLSFRRNNAITAQGMKAFAGLINLVKLDLERCTRIHGGLVNLKGLMKLESLNIKWCNCITDSDMKPLSGLTNL  182 (469)
Q Consensus       103 ~~~~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~L  182 (469)
                      ..+++|++|+++++.+..  .+ .+..+++|++|++++|. +...+. +..+++|++|++++|. +..  ...+..+++|
T Consensus        41 ~~l~~L~~L~l~~~~i~~--~~-~~~~~~~L~~L~l~~n~-i~~~~~-~~~l~~L~~L~L~~n~-i~~--~~~~~~l~~L  112 (347)
T 4fmz_A           41 EELESITKLVVAGEKVAS--IQ-GIEYLTNLEYLNLNGNQ-ITDISP-LSNLVKLTNLYIGTNK-ITD--ISALQNLTNL  112 (347)
T ss_dssp             HHHTTCSEEECCSSCCCC--CT-TGGGCTTCCEEECCSSC-CCCCGG-GTTCTTCCEEECCSSC-CCC--CGGGTTCTTC
T ss_pred             hhcccccEEEEeCCcccc--ch-hhhhcCCccEEEccCCc-cccchh-hhcCCcCCEEEccCCc-ccC--chHHcCCCcC
Confidence            345666666666665321  11 25556666666666653 222222 5555555555555532 221  1234455555


Q ss_pred             CEEEecccccChhhhhhccCCCCCCeeeccCCCCchhhHHhhhcCCCCcEEECCCCCCChhHHHHhhcCCCccEEEccCC
Q 012186          183 KSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACLDSLSALGSLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFN  262 (469)
Q Consensus       183 ~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~  262 (469)
                      ++|+++++.+.....  +..++                        +|+.|++++|...... ..+..+++|+.|+++++
T Consensus       113 ~~L~l~~n~i~~~~~--~~~l~------------------------~L~~L~l~~n~~~~~~-~~~~~l~~L~~L~l~~~  165 (347)
T 4fmz_A          113 RELYLNEDNISDISP--LANLT------------------------KMYSLNLGANHNLSDL-SPLSNMTGLNYLTVTES  165 (347)
T ss_dssp             SEEECTTSCCCCCGG--GTTCT------------------------TCCEEECTTCTTCCCC-GGGTTCTTCCEEECCSS
T ss_pred             CEEECcCCcccCchh--hccCC------------------------ceeEEECCCCCCcccc-cchhhCCCCcEEEecCC
Confidence            555555554443221  44444                        4444444444322211 12445555555555555


Q ss_pred             CCchHHHHHhhCCCCCCEEecCCCCCChHHHHHhhCCCCCCEEeccCCCCChhhHHHhhCCCCCcEEecccCCCCchHHH
Q 012186          263 EITDECLVHLKGLTNLESLNLDSCGIGDEGLVNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISDGSLR  342 (469)
Q Consensus       263 ~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~  342 (469)
                      .+....+  +..+++|+.|++++|.+.....  +..+++|+.+++.+|.+.....  +..+++|+.|++++|.+....+ 
T Consensus       166 ~~~~~~~--~~~l~~L~~L~l~~n~l~~~~~--~~~l~~L~~L~l~~n~l~~~~~--~~~~~~L~~L~l~~n~l~~~~~-  238 (347)
T 4fmz_A          166 KVKDVTP--IANLTDLYSLSLNYNQIEDISP--LASLTSLHYFTAYVNQITDITP--VANMTRLNSLKIGNNKITDLSP-  238 (347)
T ss_dssp             CCCCCGG--GGGCTTCSEEECTTSCCCCCGG--GGGCTTCCEEECCSSCCCCCGG--GGGCTTCCEEECCSSCCCCCGG-
T ss_pred             CcCCchh--hccCCCCCEEEccCCccccccc--ccCCCccceeecccCCCCCCch--hhcCCcCCEEEccCCccCCCcc-
Confidence            5443222  4555666666666665543322  5556666666666666555433  5666777777777776665543 


Q ss_pred             hhhCCCCCcEEEccCCCCCHHHHHHHhcCCCCCEeecCCCCCChhHHHHhHcCCCCCeeeeCCCCCCHHHHHHHhcCCCC
Q 012186          343 KLAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLFGARITDSGAAYLRNFKNLRSLEICGGGLTDAGVKHIKDLSSL  422 (469)
Q Consensus       343 ~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L  422 (469)
                       +..+++|+.|++++|.++..  ..+..+++|++|++++|.+++.  ..+..+++|+.|++++|.+++..+..+..+++|
T Consensus       239 -~~~l~~L~~L~l~~n~l~~~--~~~~~l~~L~~L~l~~n~l~~~--~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L  313 (347)
T 4fmz_A          239 -LANLSQLTWLEIGTNQISDI--NAVKDLTKLKMLNVGSNQISDI--SVLNNLSQLNSLFLNNNQLGNEDMEVIGGLTNL  313 (347)
T ss_dssp             -GTTCTTCCEEECCSSCCCCC--GGGTTCTTCCEEECCSSCCCCC--GGGGGCTTCSEEECCSSCCCGGGHHHHHTCTTC
T ss_pred             -hhcCCCCCEEECCCCccCCC--hhHhcCCCcCEEEccCCccCCC--hhhcCCCCCCEEECcCCcCCCcChhHhhccccC
Confidence             66777777777777777664  3466778888888888877775  356778888888888888888878888888888


Q ss_pred             CeeeccCCCCCChhHHHHHHhCcccccccccCCCCCH
Q 012186          423 TLLNLSQNCNLTDKTLELISGLTGLVSLNVSNSRITS  459 (469)
Q Consensus       423 ~~L~l~~~~~l~~~~~~~l~~l~~L~~L~l~~~~~~~  459 (469)
                      ++|++++| .++...+  +..+++|+.|++++|++++
T Consensus       314 ~~L~L~~n-~l~~~~~--~~~l~~L~~L~l~~N~i~~  347 (347)
T 4fmz_A          314 TTLFLSQN-HITDIRP--LASLSKMDSADFANQVIKK  347 (347)
T ss_dssp             SEEECCSS-SCCCCGG--GGGCTTCSEESSSCC----
T ss_pred             CEEEccCC-ccccccC--hhhhhccceeehhhhcccC
Confidence            88888888 5776665  7788888888888888763

>3ogk_B Coronatine-insensitive protein 1; leucine rich repeat, ubiquitin ligase, SCF, protein binding; HET: OGK; 2.80A {Arabidopsis thaliana} PDB: 3ogl_B* 3ogm_B*

Probab=100.00  E-value=1.2e-31  Score=266.74  Aligned_cols=413  Identities=20%  Similarity=0.209  Sum_probs=298.5

Q ss_pred             HHHhcCCCccEEEecCCCC--------------Ch-HhhHhhhcCCCCCEEecCCCcccChhHhHhhhC-CCC-CCEEeC
Q 012186           51 VIASQGSSLLSVDLSGSDV--------------TD-SGLIHLKDCSNLQSLDFNFCIQISDGGLEHLRG-LSN-LTSLSF  113 (469)
Q Consensus        51 ~~~~~~~~l~~L~l~~~~~--------------~~-~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~l~~-~~~-L~~L~l  113 (469)
                      ....+.+++++|+++++..              .. ........+++|++|++++| .+++..+..+.. +++ |++|++
T Consensus        67 ~~~~~~~~L~~L~L~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~L~~L~L~~~-~i~~~~~~~l~~~~~~~L~~L~L  145 (592)
T 3ogk_B           67 RLSRRFPNLRSLKLKGKPRAAMFNLIPENWGGYVTPWVTEISNNLRQLKSVHFRRM-IVSDLDLDRLAKARADDLETLKL  145 (592)
T ss_dssp             HHHHHCTTCSEEEEECSCGGGGGTCSCTTSCCBCHHHHHHHHHHCTTCCEEEEESC-BCCHHHHHHHHHHHGGGCCEEEE
T ss_pred             HHHHhCCCCeEEEecCCcchhhcccccccccccchHHHHHHHhhCCCCCeEEeecc-EecHHHHHHHHHhccccCcEEEC
Confidence            3455678899999976321              11 12233348999999999986 677777777765 444 999999


Q ss_pred             CCCCcCcHH-HHHHHhCCCCCCEEecccccccccc----cccccCCCCccEEEccCCCCC--C-hhhhhcccCCCCCCEE
Q 012186          114 RRNNAITAQ-GMKAFAGLINLVKLDLERCTRIHGG----LVNLKGLMKLESLNIKWCNCI--T-DSDMKPLSGLTNLKSL  185 (469)
Q Consensus       114 ~~~~~~~~~-~~~~~~~l~~L~~L~l~~~~~~~~~----~~~l~~l~~L~~L~l~~~~~~--~-~~~~~~~~~~~~L~~L  185 (469)
                      ++|...... .+.....+++|++|++++|......    ......+++|++|+++++...  . ......+..+++|+.|
T Consensus       146 ~~~~~~~~~~l~~~~~~~~~L~~L~L~~~~~~~~~~~~l~~~~~~~~~L~~L~L~~n~~~~~~~~~l~~~~~~~~~L~~L  225 (592)
T 3ogk_B          146 DKCSGFTTDGLLSIVTHCRKIKTLLMEESSFSEKDGKWLHELAQHNTSLEVLNFYMTEFAKISPKDLETIARNCRSLVSV  225 (592)
T ss_dssp             ESCEEEEHHHHHHHHHHCTTCSEEECTTCEEECCCSHHHHHHHHHCCCCCEEECTTCCCSSCCHHHHHHHHHHCTTCCEE
T ss_pred             cCCCCcCHHHHHHHHhhCCCCCEEECccccccCcchhHHHHHHhcCCCccEEEeeccCCCccCHHHHHHHHhhCCCCcEE
Confidence            988744333 3344558899999999998543332    223467889999999885542  1 2233445678999999


Q ss_pred             EecccccChhhhhhccCCCCCCeeeccCCCCc---hhhHHhhhcCCCCcEEECCCCCCChhHHHHhhcCCCccEEEccCC
Q 012186          186 QISCSKVTDSGIAYLKGLQKLTLLNLEGCPVT---AACLDSLSALGSLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFN  262 (469)
Q Consensus       186 ~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~---~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~  262 (469)
                      ++.++.+.+. +..+..+++|+.|++++....   ......+..+++|+.+.+.++.. ...+..+..+++|+.|++++|
T Consensus       226 ~L~~~~~~~l-~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~-~~l~~~~~~~~~L~~L~Ls~~  303 (592)
T 3ogk_B          226 KVGDFEILEL-VGFFKAAANLEEFCGGSLNEDIGMPEKYMNLVFPRKLCRLGLSYMGP-NEMPILFPFAAQIRKLDLLYA  303 (592)
T ss_dssp             ECSSCBGGGG-HHHHHHCTTCCEEEECBCCCCTTCTTSSSCCCCCTTCCEEEETTCCT-TTGGGGGGGGGGCCEEEETTC
T ss_pred             eccCccHHHH-HHHHhhhhHHHhhcccccccccchHHHHHHhhccccccccCccccch-hHHHHHHhhcCCCcEEecCCC
Confidence            9998887753 466788899999999754222   11223456778999999887532 334555677889999999998


Q ss_pred             CCchHHH-HHhhCCCCCCEEecCCCCCChHHHHHh-hCCCCCCEEeccC-----------CCCChhhHHH-hhCCCCCcE
Q 012186          263 EITDECL-VHLKGLTNLESLNLDSCGIGDEGLVNL-TGLCNLKCLELSD-----------TQVGSSGLRH-LSGLTNLES  328 (469)
Q Consensus       263 ~~~~~~~-~~~~~l~~L~~L~l~~~~~~~~~~~~~-~~~~~L~~L~l~~-----------~~~~~~~~~~-~~~~~~L~~  328 (469)
                      .+++... ..+..+++|+.|++. +.+.......+ ..+++|++|++.+           +.++...... ...+++|++
T Consensus       304 ~l~~~~~~~~~~~~~~L~~L~L~-~~~~~~~l~~~~~~~~~L~~L~L~~g~~~~~~~~~~~~~~~~~~~~l~~~~~~L~~  382 (592)
T 3ogk_B          304 LLETEDHCTLIQKCPNLEVLETR-NVIGDRGLEVLAQYCKQLKRLRIERGADEQGMEDEEGLVSQRGLIALAQGCQELEY  382 (592)
T ss_dssp             CCCHHHHHHHHTTCTTCCEEEEE-GGGHHHHHHHHHHHCTTCCEEEEECCCCSSTTSSTTCCCCHHHHHHHHHHCTTCSE
T ss_pred             cCCHHHHHHHHHhCcCCCEEecc-CccCHHHHHHHHHhCCCCCEEEeecCccccccccccCccCHHHHHHHHhhCccCeE
Confidence            8776544 446789999999998 33444444443 5788999999983           4566554444 456899999


Q ss_pred             EecccCCCCchHHHhhhC-CCCCcEEEcc----CCCCCHH-----HHHHHhcCCCCCEeecCCCC--CChhHHHHhH-cC
Q 012186          329 INLSFTGISDGSLRKLAG-LSSLKSLNLD----ARQITDT-----GLAALTSLTGLTHLDLFGAR--ITDSGAAYLR-NF  395 (469)
Q Consensus       329 L~l~~~~~~~~~~~~~~~-~~~L~~L~l~----~~~~~~~-----~~~~l~~~~~L~~L~l~~~~--~~~~~~~~~~-~~  395 (469)
                      |.++.+.+++..+..++. +++|+.|+++    .+.++..     ....+.++++|++|+++.|.  +++.....+. .+
T Consensus       383 L~l~~~~l~~~~~~~l~~~~~~L~~L~l~~~~~~n~l~~~p~~~~~~~~~~~~~~L~~L~L~~~~~~l~~~~~~~~~~~~  462 (592)
T 3ogk_B          383 MAVYVSDITNESLESIGTYLKNLCDFRLVLLDREERITDLPLDNGVRSLLIGCKKLRRFAFYLRQGGLTDLGLSYIGQYS  462 (592)
T ss_dssp             EEEEESCCCHHHHHHHHHHCCSCCEEEEEECSCCSCCSSCCCHHHHHHHHHHCTTCCEEEEECCGGGCCHHHHHHHHHSC
T ss_pred             EEeecCCccHHHHHHHHhhCCCCcEEEEeecCCCccccCchHHHHHHHHHHhCCCCCEEEEecCCCCccHHHHHHHHHhC
Confidence            999888898888877776 8999999996    4566642     33456679999999997654  7777666664 48


Q ss_pred             CCCCeeeeCCCCCCHHHH-HHHhcCCCCCeeeccCCCCCChhHH-HHHHhCcccccccccCCCCCHHHHHhhhhc
Q 012186          396 KNLRSLEICGGGLTDAGV-KHIKDLSSLTLLNLSQNCNLTDKTL-ELISGLTGLVSLNVSNSRITSAGLRHLNHA  468 (469)
Q Consensus       396 ~~L~~L~l~~~~~~~~~~-~~l~~~~~L~~L~l~~~~~l~~~~~-~~l~~l~~L~~L~l~~~~~~~~~~~~l~~~  468 (469)
                      ++|+.|++++|++++... ..+.++++|++|++++|+ ++.... ..+..+++|+.|++++|++++.|++.+++.
T Consensus       463 ~~L~~L~L~~n~l~~~~~~~~~~~~~~L~~L~l~~n~-l~~~~~~~~~~~l~~L~~L~ls~n~it~~~~~~l~~~  536 (592)
T 3ogk_B          463 PNVRWMLLGYVGESDEGLMEFSRGCPNLQKLEMRGCC-FSERAIAAAVTKLPSLRYLWVQGYRASMTGQDLMQMA  536 (592)
T ss_dssp             TTCCEEEECSCCSSHHHHHHHHTCCTTCCEEEEESCC-CBHHHHHHHHHHCSSCCEEEEESCBCCTTCTTGGGGC
T ss_pred             ccceEeeccCCCCCHHHHHHHHhcCcccCeeeccCCC-CcHHHHHHHHHhcCccCeeECcCCcCCHHHHHHHHHh
Confidence            999999999999988554 445788999999999994 776544 445689999999999999999999888754

>4g8a_A TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, immune system; HET: NAG LP4 LP5 DAO MYR KDO; 2.40A {Homo sapiens} PDB: 3fxi_A*

Probab=100.00  E-value=2.2e-34  Score=289.06  Aligned_cols=399  Identities=22%  Similarity=0.227  Sum_probs=272.2

Q ss_pred             cCCCccEEEecCCCCChHhhHhhhcCCCCCEEecCCCcccChhHhHhhhCCCCCCEEeCCCCCcCcHHHHHHHhCCCCCC
Q 012186           55 QGSSLLSVDLSGSDVTDSGLIHLKDCSNLQSLDFNFCIQISDGGLEHLRGLSNLTSLSFRRNNAITAQGMKAFAGLINLV  134 (469)
Q Consensus        55 ~~~~l~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~l~~L~  134 (469)
                      -++++++|+|++|.++...+..|.++++|++|++++| .++...+.+|.++++|++|+|++|.+ ....+..|..+++|+
T Consensus        50 lp~~~~~LdLs~N~i~~l~~~~f~~l~~L~~L~Ls~N-~i~~i~~~~f~~L~~L~~L~Ls~N~l-~~l~~~~f~~L~~L~  127 (635)
T 4g8a_A           50 LPFSTKNLDLSFNPLRHLGSYSFFSFPELQVLDLSRC-EIQTIEDGAYQSLSHLSTLILTGNPI-QSLALGAFSGLSSLQ  127 (635)
T ss_dssp             SCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECTTC-CCCEECTTTTTTCTTCCEEECTTCCC-CEECGGGGTTCTTCC
T ss_pred             CCcCCCEEEeeCCCCCCCCHHHHhCCCCCCEEECCCC-cCCCcChhHhcCCCCCCEEEccCCcC-CCCCHHHhcCCCCCC
Confidence            3568999999999999877788999999999999995 68887788899999999999999974 455567789999999


Q ss_pred             EEecccccccccccccccCCCCccEEEccCCCCCChhhhhcccCCCCCCEEEecccccChhhhhhccCCCCC----Ceee
Q 012186          135 KLDLERCTRIHGGLVNLKGLMKLESLNIKWCNCITDSDMKPLSGLTNLKSLQISCSKVTDSGIAYLKGLQKL----TLLN  210 (469)
Q Consensus       135 ~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~l~~L----~~L~  210 (469)
                      +|++++|......+..+.++++|++|+++++.......+..+..+++|++|++++|.++......+..++++    ..++
T Consensus       128 ~L~Ls~N~l~~l~~~~~~~L~~L~~L~Ls~N~l~~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~l~~L~~l~~~~~~~~  207 (635)
T 4g8a_A          128 KLVAVETNLASLENFPIGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQSIYCTDLRVLHQMPLLNLSLD  207 (635)
T ss_dssp             EEECTTSCCCCSTTCCCTTCTTCCEEECCSSCCCCCCCCGGGGGCTTCCEEECCSSCCCEECGGGGHHHHTCTTCCCEEE
T ss_pred             EEECCCCcCCCCChhhhhcCcccCeeccccCccccCCCchhhccchhhhhhcccCccccccccccccchhhhhhhhhhhh
Confidence            999999854444445689999999999999654443455677889999999999998876554444332221    1222


Q ss_pred             ccCCCCch------------------------hhHHhhhcCCCC------------------------------------
Q 012186          211 LEGCPVTA------------------------ACLDSLSALGSL------------------------------------  230 (469)
Q Consensus       211 l~~~~~~~------------------------~~~~~~~~~~~L------------------------------------  230 (469)
                      ++.+.+..                        .....+..++.+                                    
T Consensus       208 ls~n~l~~i~~~~~~~~~~~~l~l~~n~~~~~~~~~~~~~l~~l~~~~l~~~~~~~~~~l~~~~~~~~~~~~~l~~~~l~  287 (635)
T 4g8a_A          208 LSLNPMNFIQPGAFKEIRLHKLTLRNNFDSLNVMKTCIQGLAGLEVHRLVLGEFRNEGNLEKFDKSALEGLCNLTIEEFR  287 (635)
T ss_dssp             CTTCCCCEECTTTTTTCEEEEEEEESCCSSHHHHHHHHHTTTTCEEEEEEEECCTTSCCCSCCCTTTTGGGGGSEEEEEE
T ss_pred             cccCcccccCcccccchhhhhhhhhcccccccccchhhcCCcccccccccccccccccccccccccccccccchhhhhhh
Confidence            22222110                        111111122211                                    


Q ss_pred             ---------------------cEEECCCCCCChhHHHHhhcCCCccEEEccCCCCchHHH-------------------H
Q 012186          231 ---------------------FYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECL-------------------V  270 (469)
Q Consensus       231 ---------------------~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~-------------------~  270 (469)
                                           +.+.+..+.+..  ...+.....++.|++.++.+.....                   .
T Consensus       288 ~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~--~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~L~~l~l~~n~~~~~~  365 (635)
T 4g8a_A          288 LAYLDYYLDGIIDLFNCLTNVSSFSLVSVTIER--VKDFSYNFGWQHLELVNCKFGQFPTLKLKSLKRLTFTSNKGGNAF  365 (635)
T ss_dssp             EECCCSCEEECTTTTGGGTTCSEEEEESCEEEE--CGGGGSCCCCSEEEEESCEESSCCCCBCTTCCEEEEESCCSCCBC
T ss_pred             hhhhcccccchhhhhhhhccccccccccccccc--ccccccchhhhhhhcccccccCcCcccchhhhhcccccccCCCCc
Confidence                                 112111111110  0112233344444443332211000                   0


Q ss_pred             HhhCCCCCCEEecCCCCCChH--HH-----------------------HHhhCCCCCCEEeccCCCCChh-hHHHhhCCC
Q 012186          271 HLKGLTNLESLNLDSCGIGDE--GL-----------------------VNLTGLCNLKCLELSDTQVGSS-GLRHLSGLT  324 (469)
Q Consensus       271 ~~~~l~~L~~L~l~~~~~~~~--~~-----------------------~~~~~~~~L~~L~l~~~~~~~~-~~~~~~~~~  324 (469)
                      ....+++|+.++++.+.+...  .+                       ..+..+++|+.+++..+..... ....+..++
T Consensus       366 ~~~~l~~L~~L~ls~n~l~~~~~~~~~~~~~~~L~~L~~~~~~~~~~~~~~~~l~~L~~l~l~~~~~~~~~~~~~~~~l~  445 (635)
T 4g8a_A          366 SEVDLPSLEFLDLSRNGLSFKGCCSQSDFGTISLKYLDLSFNGVITMSSNFLGLEQLEHLDFQHSNLKQMSEFSVFLSLR  445 (635)
T ss_dssp             CCCBCTTCCEEECCSSCCBEEEECCHHHHSCSCCCEEECCSCSEEEECSCCTTCTTCCEEECTTSEEESTTSSCTTTTCT
T ss_pred             ccccccccccchhhccccccccccccchhhhhhhhhhhccccccccccccccccccccchhhhhcccccccccccccccc
Confidence            112344555555555443211  11                       1233445556666555432221 122355778


Q ss_pred             CCcEEecccCCCCchHHHhhhCCCCCcEEEccCCCCCH-HHHHHHhcCCCCCEeecCCCCCChhHHHHhHcCCCCCeeee
Q 012186          325 NLESINLSFTGISDGSLRKLAGLSSLKSLNLDARQITD-TGLAALTSLTGLTHLDLFGARITDSGAAYLRNFKNLRSLEI  403 (469)
Q Consensus       325 ~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~-~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l  403 (469)
                      +++.++++.|.+....+..+..+++++.|++++|.... ..+..+..+++|++|++++|++++..|..+..+++|+.|++
T Consensus       446 ~l~~l~ls~n~l~~~~~~~~~~~~~L~~L~Ls~N~~~~~~~~~~~~~l~~L~~L~Ls~N~L~~l~~~~f~~l~~L~~L~L  525 (635)
T 4g8a_A          446 NLIYLDISHTHTRVAFNGIFNGLSSLEVLKMAGNSFQENFLPDIFTELRNLTFLDLSQCQLEQLSPTAFNSLSSLQVLNM  525 (635)
T ss_dssp             TCCEEECTTSCCEECCTTTTTTCTTCCEEECTTCEEGGGEECSCCTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEEC
T ss_pred             ccccccccccccccccccccccchhhhhhhhhhcccccccCchhhhhccccCEEECCCCccCCcChHHHcCCCCCCEEEC
Confidence            88888888888777666777788999999999886443 34556778899999999999999988888999999999999


Q ss_pred             CCCCCCHHHHHHHhcCCCCCeeeccCCCCCChhHHHHHHhC-cccccccccCCCCC
Q 012186          404 CGGGLTDAGVKHIKDLSSLTLLNLSQNCNLTDKTLELISGL-TGLVSLNVSNSRIT  458 (469)
Q Consensus       404 ~~~~~~~~~~~~l~~~~~L~~L~l~~~~~l~~~~~~~l~~l-~~L~~L~l~~~~~~  458 (469)
                      ++|++++..+..|.++++|+.|++++| .++...++.+..+ ++|+.|++++|++.
T Consensus       526 s~N~l~~l~~~~~~~l~~L~~L~Ls~N-~l~~~~~~~l~~l~~~L~~L~L~~Np~~  580 (635)
T 4g8a_A          526 SHNNFFSLDTFPYKCLNSLQVLDYSLN-HIMTSKKQELQHFPSSLAFLNLTQNDFA  580 (635)
T ss_dssp             TTSCCCBCCCGGGTTCTTCCEEECTTS-CCCBCCSSCTTCCCTTCCEEECTTCCBC
T ss_pred             CCCcCCCCChhHHhCCCCCCEEECCCC-cCCCCCHHHHHhhhCcCCEEEeeCCCCc
Confidence            999999988888889999999999999 8888888888887 68999999998874

>3ogk_B Coronatine-insensitive protein 1; leucine rich repeat, ubiquitin ligase, SCF, protein binding; HET: OGK; 2.80A {Arabidopsis thaliana} PDB: 3ogl_B* 3ogm_B*

Probab=100.00  E-value=1.6e-31  Score=265.71  Aligned_cols=408  Identities=18%  Similarity=0.153  Sum_probs=307.8

Q ss_pred             CCCHHHHHHHHhcCCCccEEEecCCCCChHhhHhhhc-CCC-CCEEecCCCcccChhHhHhh-hCCCCCCEEeCCCCCcC
Q 012186           43 GVNDKWMDVIASQGSSLLSVDLSGSDVTDSGLIHLKD-CSN-LQSLDFNFCIQISDGGLEHL-RGLSNLTSLSFRRNNAI  119 (469)
Q Consensus        43 ~~~~~~~~~~~~~~~~l~~L~l~~~~~~~~~~~~~~~-~~~-L~~L~l~~~~~~~~~~~~~l-~~~~~L~~L~l~~~~~~  119 (469)
                      +....|...+...++++++|+++++.+++..+..+.+ +++ |++|++++|..++......+ .++++|++|++++|.+.
T Consensus        98 ~~~~~~l~~l~~~~~~L~~L~L~~~~i~~~~~~~l~~~~~~~L~~L~L~~~~~~~~~~l~~~~~~~~~L~~L~L~~~~~~  177 (592)
T 3ogk_B           98 GYVTPWVTEISNNLRQLKSVHFRRMIVSDLDLDRLAKARADDLETLKLDKCSGFTTDGLLSIVTHCRKIKTLLMEESSFS  177 (592)
T ss_dssp             CBCHHHHHHHHHHCTTCCEEEEESCBCCHHHHHHHHHHHGGGCCEEEEESCEEEEHHHHHHHHHHCTTCSEEECTTCEEE
T ss_pred             ccchHHHHHHHhhCCCCCeEEeeccEecHHHHHHHHHhccccCcEEECcCCCCcCHHHHHHHHhhCCCCCEEECcccccc
Confidence            4456788888888999999999999999888887765 555 99999999876665554443 58999999999999642


Q ss_pred             cH---HHHHHHhCCCCCCEEeccccccc----ccccccccCCCCccEEEccCCCCCChhhhhcccCCCCCCEEEeccccc
Q 012186          120 TA---QGMKAFAGLINLVKLDLERCTRI----HGGLVNLKGLMKLESLNIKWCNCITDSDMKPLSGLTNLKSLQISCSKV  192 (469)
Q Consensus       120 ~~---~~~~~~~~l~~L~~L~l~~~~~~----~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~  192 (469)
                      ..   ..+.....+++|++|+++++...    ...+..+.++++|++|++.+|.. .. .+..+..+++|++|++.....
T Consensus       178 ~~~~~~l~~~~~~~~~L~~L~L~~n~~~~~~~~~l~~~~~~~~~L~~L~L~~~~~-~~-l~~~~~~~~~L~~L~l~~~~~  255 (592)
T 3ogk_B          178 EKDGKWLHELAQHNTSLEVLNFYMTEFAKISPKDLETIARNCRSLVSVKVGDFEI-LE-LVGFFKAAANLEEFCGGSLNE  255 (592)
T ss_dssp             CCCSHHHHHHHHHCCCCCEEECTTCCCSSCCHHHHHHHHHHCTTCCEEECSSCBG-GG-GHHHHHHCTTCCEEEECBCCC
T ss_pred             CcchhHHHHHHhcCCCccEEEeeccCCCccCHHHHHHHHhhCCCCcEEeccCccH-HH-HHHHHhhhhHHHhhccccccc
Confidence            21   14556678999999999987543    12234466899999999998653 32 446778899999999975432


Q ss_pred             C---hhhhhhccCCCCCCeeeccCCCCchhhHHhhhcCCCCcEEECCCCCCChhHH-HHhhcCCCccEEEccCCCCchH-
Q 012186          193 T---DSGIAYLKGLQKLTLLNLEGCPVTAACLDSLSALGSLFYLNLNRCQLSDDGC-EKFSKIGSLKVLNLGFNEITDE-  267 (469)
Q Consensus       193 ~---~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~-~~~~~~~~L~~L~l~~~~~~~~-  267 (469)
                      .   ......+..+++|+.+.++++... ..+..+..+++|++|++++|.+..... ..+..+++|+.|++++ .+.+. 
T Consensus       256 ~~~~~~~~~~l~~~~~L~~L~l~~~~~~-~l~~~~~~~~~L~~L~Ls~~~l~~~~~~~~~~~~~~L~~L~L~~-~~~~~~  333 (592)
T 3ogk_B          256 DIGMPEKYMNLVFPRKLCRLGLSYMGPN-EMPILFPFAAQIRKLDLLYALLETEDHCTLIQKCPNLEVLETRN-VIGDRG  333 (592)
T ss_dssp             CTTCTTSSSCCCCCTTCCEEEETTCCTT-TGGGGGGGGGGCCEEEETTCCCCHHHHHHHHTTCTTCCEEEEEG-GGHHHH
T ss_pred             ccchHHHHHHhhccccccccCccccchh-HHHHHHhhcCCCcEEecCCCcCCHHHHHHHHHhCcCCCEEeccC-ccCHHH
Confidence            2   223345678889999999886433 335667788999999999999877655 3468899999999994 44433 


Q ss_pred             HHHHhhCCCCCCEEecCC-----------CCCChHHHHH-hhCCCCCCEEeccCCCCChhhHHHhhC-CCCCcEEecc--
Q 012186          268 CLVHLKGLTNLESLNLDS-----------CGIGDEGLVN-LTGLCNLKCLELSDTQVGSSGLRHLSG-LTNLESINLS--  332 (469)
Q Consensus       268 ~~~~~~~l~~L~~L~l~~-----------~~~~~~~~~~-~~~~~~L~~L~l~~~~~~~~~~~~~~~-~~~L~~L~l~--  332 (469)
                      .+.....+++|++|++++           +.++...... ...+++|++|++..+.++......++. +++|+.|+++  
T Consensus       334 l~~~~~~~~~L~~L~L~~g~~~~~~~~~~~~~~~~~~~~l~~~~~~L~~L~l~~~~l~~~~~~~l~~~~~~L~~L~l~~~  413 (592)
T 3ogk_B          334 LEVLAQYCKQLKRLRIERGADEQGMEDEEGLVSQRGLIALAQGCQELEYMAVYVSDITNESLESIGTYLKNLCDFRLVLL  413 (592)
T ss_dssp             HHHHHHHCTTCCEEEEECCCCSSTTSSTTCCCCHHHHHHHHHHCTTCSEEEEEESCCCHHHHHHHHHHCCSCCEEEEEEC
T ss_pred             HHHHHHhCCCCCEEEeecCccccccccccCccCHHHHHHHHhhCccCeEEEeecCCccHHHHHHHHhhCCCCcEEEEeec
Confidence            334456789999999994           4666655544 346899999999888888887777765 9999999997  


Q ss_pred             --cCCCCch-----HHHhhhCCCCCcEEEccCC--CCCHHHHHHHh-cCCCCCEeecCCCCCChhH-HHHhHcCCCCCee
Q 012186          333 --FTGISDG-----SLRKLAGLSSLKSLNLDAR--QITDTGLAALT-SLTGLTHLDLFGARITDSG-AAYLRNFKNLRSL  401 (469)
Q Consensus       333 --~~~~~~~-----~~~~~~~~~~L~~L~l~~~--~~~~~~~~~l~-~~~~L~~L~l~~~~~~~~~-~~~~~~~~~L~~L  401 (469)
                        .+.+++.     ....+..+++|+.|+++.|  .++...+..+. .+++|++|++++|.+++.. +..+..+++|+.|
T Consensus       414 ~~~n~l~~~p~~~~~~~~~~~~~~L~~L~L~~~~~~l~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~~~~~L~~L  493 (592)
T 3ogk_B          414 DREERITDLPLDNGVRSLLIGCKKLRRFAFYLRQGGLTDLGLSYIGQYSPNVRWMLLGYVGESDEGLMEFSRGCPNLQKL  493 (592)
T ss_dssp             SCCSCCSSCCCHHHHHHHHHHCTTCCEEEEECCGGGCCHHHHHHHHHSCTTCCEEEECSCCSSHHHHHHHHTCCTTCCEE
T ss_pred             CCCccccCchHHHHHHHHHHhCCCCCEEEEecCCCCccHHHHHHHHHhCccceEeeccCCCCCHHHHHHHHhcCcccCee
Confidence              4456542     3444667999999999864  47777666665 4899999999999999854 4556889999999


Q ss_pred             eeCCCCCCHHHHHH-HhcCCCCCeeeccCCCCCChhHHHHHH-hCcccccccccCC
Q 012186          402 EICGGGLTDAGVKH-IKDLSSLTLLNLSQNCNLTDKTLELIS-GLTGLVSLNVSNS  455 (469)
Q Consensus       402 ~l~~~~~~~~~~~~-l~~~~~L~~L~l~~~~~l~~~~~~~l~-~l~~L~~L~l~~~  455 (469)
                      ++++|.+++..+.. ...+++|++|++++| .++......+. .+|.+....+..+
T Consensus       494 ~l~~n~l~~~~~~~~~~~l~~L~~L~ls~n-~it~~~~~~l~~~~p~l~~~~~~~~  548 (592)
T 3ogk_B          494 EMRGCCFSERAIAAAVTKLPSLRYLWVQGY-RASMTGQDLMQMARPYWNIELIPSR  548 (592)
T ss_dssp             EEESCCCBHHHHHHHHHHCSSCCEEEEESC-BCCTTCTTGGGGCCTTEEEEEECCC
T ss_pred             eccCCCCcHHHHHHHHHhcCccCeeECcCC-cCCHHHHHHHHHhCCCcEEEEecCc
Confidence            99999998765544 467999999999999 57776544443 5677766655544

>2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens}

Probab=100.00  E-value=1.4e-33  Score=272.71  Aligned_cols=300  Identities=21%  Similarity=0.197  Sum_probs=233.5

Q ss_pred             CCCCEEecccccccccccccccCCCCccEEEccCCCCCChhhhhcccCCCCCCEEEecccccChhhhhhccCCCCCCeee
Q 012186          131 INLVKLDLERCTRIHGGLVNLKGLMKLESLNIKWCNCITDSDMKPLSGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLN  210 (469)
Q Consensus       131 ~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~  210 (469)
                      +++++|++++|......+..+.++++|++|+++++ .+....+..+.++++|++|++++|.++......+.++++|++|+
T Consensus        32 ~~l~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n-~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~  110 (477)
T 2id5_A           32 TETRLLDLGKNRIKTLNQDEFASFPHLEELELNEN-IVSAVEPGAFNNLFNLRTLGLRSNRLKLIPLGVFTGLSNLTKLD  110 (477)
T ss_dssp             TTCSEEECCSSCCCEECTTTTTTCTTCCEEECTTS-CCCEECTTTTTTCTTCCEEECCSSCCCSCCTTSSTTCTTCCEEE
T ss_pred             CCCcEEECCCCccceECHhHccCCCCCCEEECCCC-ccCEeChhhhhCCccCCEEECCCCcCCccCcccccCCCCCCEEE
Confidence            57888998887544444567888888888888884 46656667788888888888888888877666778888888888


Q ss_pred             ccCCCCchhhHHhhhcCCCCcEEECCCCCCChhHHHHhhcCCCccEEEccCCCCchHHHHHhhCCCCCCEEecCCCCCCh
Q 012186          211 LEGCPVTAACLDSLSALGSLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNLDSCGIGD  290 (469)
Q Consensus       211 l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~  290 (469)
                      +++|.+....+..+..+++|++|++.+|.+....+..+..+++|+.|++++|.++...+..+..+++|+.|++++|.+..
T Consensus       111 Ls~n~i~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~i~~  190 (477)
T 2id5_A          111 ISENKIVILLDYMFQDLYNLKSLEVGDNDLVYISHRAFSGLNSLEQLTLEKCNLTSIPTEALSHLHGLIVLRLRHLNINA  190 (477)
T ss_dssp             CTTSCCCEECTTTTTTCTTCCEEEECCTTCCEECTTSSTTCTTCCEEEEESCCCSSCCHHHHTTCTTCCEEEEESCCCCE
T ss_pred             CCCCccccCChhHccccccCCEEECCCCccceeChhhccCCCCCCEEECCCCcCcccChhHhcccCCCcEEeCCCCcCcE
Confidence            88888877767778888888888888888877666677788888888888888877666677888888888888887776


Q ss_pred             HHHHHhhCCCCCCEEeccCCCCChhhHHHhhCCCCCcEEecccCCCCchHHHhhhCCCCCcEEEccCCCCCHHHHHHHhc
Q 012186          291 EGLVNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISDGSLRKLAGLSSLKSLNLDARQITDTGLAALTS  370 (469)
Q Consensus       291 ~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~  370 (469)
                      .....+..+++|+.|+++++......+.......+|+.|++++|.+.......+..+++|+.|++++|.++......+..
T Consensus       191 ~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~  270 (477)
T 2id5_A          191 IRDYSFKRLYRLKVLEISHWPYLDTMTPNCLYGLNLTSLSITHCNLTAVPYLAVRHLVYLRFLNLSYNPISTIEGSMLHE  270 (477)
T ss_dssp             ECTTCSCSCTTCCEEEEECCTTCCEECTTTTTTCCCSEEEEESSCCCSCCHHHHTTCTTCCEEECCSSCCCEECTTSCTT
T ss_pred             eChhhcccCcccceeeCCCCccccccCcccccCccccEEECcCCcccccCHHHhcCccccCeeECCCCcCCccChhhccc
Confidence            55556777888888888887655444444444557888888888877766667778888888888888887766666777


Q ss_pred             CCCCCEeecCCCCCChhHHHHhHcCCCCCeeeeCCCCCCHHHHHHHhcCCCCCeeeccCCC
Q 012186          371 LTGLTHLDLFGARITDSGAAYLRNFKNLRSLEICGGGLTDAGVKHIKDLSSLTLLNLSQNC  431 (469)
Q Consensus       371 ~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~  431 (469)
                      +++|++|++++|.+++..+..+..+++|+.|++++|.++...+..|..+++|++|++++|+
T Consensus       271 l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~  331 (477)
T 2id5_A          271 LLRLQEIQLVGGQLAVVEPYAFRGLNYLRVLNVSGNQLTTLEESVFHSVGNLETLILDSNP  331 (477)
T ss_dssp             CTTCCEEECCSSCCSEECTTTBTTCTTCCEEECCSSCCSCCCGGGBSCGGGCCEEECCSSC
T ss_pred             cccCCEEECCCCccceECHHHhcCcccCCEEECCCCcCceeCHhHcCCCcccCEEEccCCC
Confidence            8888888888888887777777788888888888888877766666777888888888884

>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B}

Probab=99.98  E-value=2.2e-30  Score=239.79  Aligned_cols=303  Identities=30%  Similarity=0.355  Sum_probs=172.7

Q ss_pred             CCccEEEecCCCCChHhhHhhhcCCCCCEEecCCCcccChhHhHhhhCCCCCCEEeCCCCCcCcHHHHHHHhCCCCCCEE
Q 012186           57 SSLLSVDLSGSDVTDSGLIHLKDCSNLQSLDFNFCIQISDGGLEHLRGLSNLTSLSFRRNNAITAQGMKAFAGLINLVKL  136 (469)
Q Consensus        57 ~~l~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L  136 (469)
                      +++++|+++++.+...  ..+..+++|++|++++| .++...+  +..+++|++|++++|.+..  . ..+..+++|++|
T Consensus        44 ~~L~~L~l~~~~i~~~--~~~~~~~~L~~L~l~~n-~i~~~~~--~~~l~~L~~L~L~~n~i~~--~-~~~~~l~~L~~L  115 (347)
T 4fmz_A           44 ESITKLVVAGEKVASI--QGIEYLTNLEYLNLNGN-QITDISP--LSNLVKLTNLYIGTNKITD--I-SALQNLTNLREL  115 (347)
T ss_dssp             TTCSEEECCSSCCCCC--TTGGGCTTCCEEECCSS-CCCCCGG--GTTCTTCCEEECCSSCCCC--C-GGGTTCTTCSEE
T ss_pred             ccccEEEEeCCccccc--hhhhhcCCccEEEccCC-ccccchh--hhcCCcCCEEEccCCcccC--c-hHHcCCCcCCEE
Confidence            4566666666665432  23556666666666664 3443322  5566666666666664322  1 235556666666


Q ss_pred             ecccccccccccccccCCCCccEEEccCCCCCChhhhhcccCCCCCCEEEecccccChhhhhhccCCCCCCeeeccCCCC
Q 012186          137 DLERCTRIHGGLVNLKGLMKLESLNIKWCNCITDSDMKPLSGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPV  216 (469)
Q Consensus       137 ~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~  216 (469)
                      ++++|. +...+. +..+++|++|++++|.....  ...+..+++|++|+++++.+.....                   
T Consensus       116 ~l~~n~-i~~~~~-~~~l~~L~~L~l~~n~~~~~--~~~~~~l~~L~~L~l~~~~~~~~~~-------------------  172 (347)
T 4fmz_A          116 YLNEDN-ISDISP-LANLTKMYSLNLGANHNLSD--LSPLSNMTGLNYLTVTESKVKDVTP-------------------  172 (347)
T ss_dssp             ECTTSC-CCCCGG-GTTCTTCCEEECTTCTTCCC--CGGGTTCTTCCEEECCSSCCCCCGG-------------------
T ss_pred             ECcCCc-ccCchh-hccCCceeEEECCCCCCccc--ccchhhCCCCcEEEecCCCcCCchh-------------------
Confidence            665543 222221 55555555555555433332  1224445555555555544443221                   


Q ss_pred             chhhHHhhhcCCCCcEEECCCCCCChhHHHHhhcCCCccEEEccCCCCchHHHHHhhCCCCCCEEecCCCCCChHHHHHh
Q 012186          217 TAACLDSLSALGSLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNLDSCGIGDEGLVNL  296 (469)
Q Consensus       217 ~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~  296 (469)
                             +..+++|+.|++++|.+.....  +..+++|+.++++++.+.+..+  +..+++|+.|++++|.+....+  +
T Consensus       173 -------~~~l~~L~~L~l~~n~l~~~~~--~~~l~~L~~L~l~~n~l~~~~~--~~~~~~L~~L~l~~n~l~~~~~--~  239 (347)
T 4fmz_A          173 -------IANLTDLYSLSLNYNQIEDISP--LASLTSLHYFTAYVNQITDITP--VANMTRLNSLKIGNNKITDLSP--L  239 (347)
T ss_dssp             -------GGGCTTCSEEECTTSCCCCCGG--GGGCTTCCEEECCSSCCCCCGG--GGGCTTCCEEECCSSCCCCCGG--G
T ss_pred             -------hccCCCCCEEEccCCccccccc--ccCCCccceeecccCCCCCCch--hhcCCcCCEEEccCCccCCCcc--h
Confidence                   4444555555555554443222  4455555555555555543222  4555566666666665544322  5


Q ss_pred             hCCCCCCEEeccCCCCChhhHHHhhCCCCCcEEecccCCCCchHHHhhhCCCCCcEEEccCCCCCHHHHHHHhcCCCCCE
Q 012186          297 TGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISDGSLRKLAGLSSLKSLNLDARQITDTGLAALTSLTGLTH  376 (469)
Q Consensus       297 ~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~  376 (469)
                      ..+++|+.|++++|.+...  ..+..+++|+.|++++|.+.+.  ..+..+++|+.|++++|.++...+..+..+++|++
T Consensus       240 ~~l~~L~~L~l~~n~l~~~--~~~~~l~~L~~L~l~~n~l~~~--~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~  315 (347)
T 4fmz_A          240 ANLSQLTWLEIGTNQISDI--NAVKDLTKLKMLNVGSNQISDI--SVLNNLSQLNSLFLNNNQLGNEDMEVIGGLTNLTT  315 (347)
T ss_dssp             TTCTTCCEEECCSSCCCCC--GGGTTCTTCCEEECCSSCCCCC--GGGGGCTTCSEEECCSSCCCGGGHHHHHTCTTCSE
T ss_pred             hcCCCCCEEECCCCccCCC--hhHhcCCCcCEEEccCCccCCC--hhhcCCCCCCEEECcCCcCCCcChhHhhccccCCE
Confidence            5666666666666655543  2456677777777777766654  34667778888888888887777777778888888


Q ss_pred             eecCCCCCChhHHHHhHcCCCCCeeeeCCCCCC
Q 012186          377 LDLFGARITDSGAAYLRNFKNLRSLEICGGGLT  409 (469)
Q Consensus       377 L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~  409 (469)
                      |++++|++++..+  +..+++|+.|++++|.++
T Consensus       316 L~L~~n~l~~~~~--~~~l~~L~~L~l~~N~i~  346 (347)
T 4fmz_A          316 LFLSQNHITDIRP--LASLSKMDSADFANQVIK  346 (347)
T ss_dssp             EECCSSSCCCCGG--GGGCTTCSEESSSCC---
T ss_pred             EEccCCccccccC--hhhhhccceeehhhhccc
Confidence            8888888877655  667888888888888765

>3a79_B TLR6, VLRB.59, TOLL-like receptor 6, variable lymphocyte recepto; diacyl lipopeptide, innate immunity, Leu repeat, cell membrane, cytoplasmic vesicle; HET: PXS NAG BMA NDG; 2.90A {Mus musculus}

Probab=99.98  E-value=5.5e-33  Score=273.82  Aligned_cols=371  Identities=18%  Similarity=0.148  Sum_probs=263.5

Q ss_pred             hcCCCccEEEecCCCCChHhhHhhhcCCCCCEEecCCCcccChhHhHhhhCCCCCCEEeCCCCCcCcHHHHHHHhCCCCC
Q 012186           54 SQGSSLLSVDLSGSDVTDSGLIHLKDCSNLQSLDFNFCIQISDGGLEHLRGLSNLTSLSFRRNNAITAQGMKAFAGLINL  133 (469)
Q Consensus        54 ~~~~~l~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~l~~L  133 (469)
                      ...+++++|++++|.+++..|..|..+++|++|++++| .++.. +..  .+++|++|++++|.+.....|..++++++|
T Consensus        73 ~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N-~l~~l-p~~--~l~~L~~L~Ls~N~l~~l~~p~~~~~l~~L  148 (562)
T 3a79_B           73 SFLSELRVLRLSHNRIRSLDFHVFLFNQDLEYLDVSHN-RLQNI-SCC--PMASLRHLDLSFNDFDVLPVCKEFGNLTKL  148 (562)
T ss_dssp             TTCTTCCEEECCSCCCCEECTTTTTTCTTCCEEECTTS-CCCEE-CSC--CCTTCSEEECCSSCCSBCCCCGGGGGCTTC
T ss_pred             ccCCCccEEECCCCCCCcCCHHHhCCCCCCCEEECCCC-cCCcc-Ccc--ccccCCEEECCCCCccccCchHhhcccCcc
Confidence            35689999999999999888899999999999999995 56643 333  799999999999986433345789999999


Q ss_pred             CEEecccccccccccccccCCCCccEEEccCCCCC-Chhhhhcc--------------------------cCCCCCCEEE
Q 012186          134 VKLDLERCTRIHGGLVNLKGLMKLESLNIKWCNCI-TDSDMKPL--------------------------SGLTNLKSLQ  186 (469)
Q Consensus       134 ~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~-~~~~~~~~--------------------------~~~~~L~~L~  186 (469)
                      ++|++++|.........+.++ +|++|+++++... ....+..+                          ..+++|+.++
T Consensus       149 ~~L~L~~n~l~~~~~~~l~~L-~L~~L~L~~n~l~~~~~~~~~l~~l~~~~l~l~l~~n~~~~~~~~~~~~~l~~L~~L~  227 (562)
T 3a79_B          149 TFLGLSAAKFRQLDLLPVAHL-HLSCILLDLVSYHIKGGETESLQIPNTTVLHLVFHPNSLFSVQVNMSVNALGHLQLSN  227 (562)
T ss_dssp             CEEEEECSBCCTTTTGGGTTS-CEEEEEEEESSCCCCSSSCCEEEECCEEEEEEEECSSSCCCCCCEEEESSEEEEEEEE
T ss_pred             cEEecCCCccccCchhhhhhc-eeeEEEeecccccccccCcccccccCcceEEEEecCccchhhhhhhcccccceEEEec
Confidence            999999975443333333333 4499999986530 22222222                          2355677777


Q ss_pred             ecccccC----hhhhhhccCCCCCCeeeccCCCCchhhHHh---hhcCCCCcEEECCCCCCChhHH--------------
Q 012186          187 ISCSKVT----DSGIAYLKGLQKLTLLNLEGCPVTAACLDS---LSALGSLFYLNLNRCQLSDDGC--------------  245 (469)
Q Consensus       187 l~~~~~~----~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~---~~~~~~L~~L~l~~~~~~~~~~--------------  245 (469)
                      ++++...    ......+..+++|+.+++.++.+.......   ....++|++|++++|.+.+..+              
T Consensus       228 l~~n~~~~~~l~~~~~~l~~l~~L~~L~L~~~~l~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~ip~~~~~~~~~~L~~L  307 (562)
T 3a79_B          228 IKLNDENCQRLMTFLSELTRGPTLLNVTLQHIETTWKCSVKLFQFFWPRPVEYLNIYNLTITERIDREEFTYSETALKSL  307 (562)
T ss_dssp             EECCSTTHHHHHHHHHHHHSCSSCEEEEEEEEEECHHHHHHHHHHHTTSSEEEEEEEEEEECSCCCCCCCCCCSCSCCEE
T ss_pred             ccccccccchHHHHHHHHhccCcceEEEecCCcCcHHHHHHHHHhhhcccccEEEEeccEeeccccchhhhcccccchhe
Confidence            7765311    112234455666666665555443321111   1122355555555554432111              


Q ss_pred             -----------------HHhhcCCCccEEEccCCCCchHHHHHhhCCCCCCEEecCCCCCChHHHHHhhCCCCCCEEecc
Q 012186          246 -----------------EKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNLDSCGIGDEGLVNLTGLCNLKCLELS  308 (469)
Q Consensus       246 -----------------~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~  308 (469)
                                       ..+....+|+.|+++++.+....  ....+++|++|++++|.+.+..+..+..+++|+.|+++
T Consensus       308 ~~~~~~~~~~~~p~~~~~~~~~~~~L~~L~l~~n~~~~~~--~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~  385 (562)
T 3a79_B          308 MIEHVKNQVFLFSKEALYSVFAEMNIKMLSISDTPFIHMV--CPPSPSSFTFLNFTQNVFTDSVFQGCSTLKRLQTLILQ  385 (562)
T ss_dssp             EEEEEEECCCSSCHHHHHHHHHTCCCSEEEEESSCCCCCC--CCSSCCCCCEEECCSSCCCTTTTTTCCSCSSCCEEECC
T ss_pred             ehhhcccceeecChhhhhhhhccCcceEEEccCCCccccc--CccCCCCceEEECCCCccccchhhhhcccCCCCEEECC
Confidence                             11122356888888888775321  12678899999999999887667778899999999999


Q ss_pred             CCCCChh--hHHHhhCCCCCcEEecccCCCCc-hHHHhhhCCCCCcEEEccCCCCCHHHHHHHhcCCCCCEeecCCCCCC
Q 012186          309 DTQVGSS--GLRHLSGLTNLESINLSFTGISD-GSLRKLAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLFGARIT  385 (469)
Q Consensus       309 ~~~~~~~--~~~~~~~~~~L~~L~l~~~~~~~-~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~  385 (469)
                      +|.+...  .+..+..+++|+.|++++|.+.. .....+..+++|+.|++++|.+++..+..+.  ++|++|++++|+++
T Consensus       386 ~N~l~~~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~l~--~~L~~L~L~~N~l~  463 (562)
T 3a79_B          386 RNGLKNFFKVALMTKNMSSLETLDVSLNSLNSHAYDRTCAWAESILVLNLSSNMLTGSVFRCLP--PKVKVLDLHNNRIM  463 (562)
T ss_dssp             SSCCCBTTHHHHTTTTCTTCCEEECTTSCCBSCCSSCCCCCCTTCCEEECCSSCCCGGGGSSCC--TTCSEEECCSSCCC
T ss_pred             CCCcCCcccchhhhcCCCCCCEEECCCCcCCCccChhhhcCcccCCEEECCCCCCCcchhhhhc--CcCCEEECCCCcCc
Confidence            9998873  34668899999999999999877 3334567789999999999999875443322  69999999999999


Q ss_pred             hhHHHHhHcCCCCCeeeeCCCCCCHHHHHHHhcCCCCCeeeccCCCCCC
Q 012186          386 DSGAAYLRNFKNLRSLEICGGGLTDAGVKHIKDLSSLTLLNLSQNCNLT  434 (469)
Q Consensus       386 ~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~l~  434 (469)
                      .. |..+..+++|+.|++++|+++...+..+..+++|+.|++++|+...
T Consensus       464 ~i-p~~~~~l~~L~~L~L~~N~l~~l~~~~~~~l~~L~~L~l~~N~~~c  511 (562)
T 3a79_B          464 SI-PKDVTHLQALQELNVASNQLKSVPDGVFDRLTSLQYIWLHDNPWDC  511 (562)
T ss_dssp             CC-CTTTTSSCCCSEEECCSSCCCCCCTTSTTTCTTCCCEECCSCCBCC
T ss_pred             cc-ChhhcCCCCCCEEECCCCCCCCCCHHHHhcCCCCCEEEecCCCcCC
Confidence            64 5555589999999999999997644448889999999999995433

>2p1m_B Transport inhibitor response 1 protein; F-BOX, leucine rich repeat, signaling protein; HET: IHP; 1.80A {Arabidopsis thaliana} PDB: 2p1n_B* 2p1o_B* 2p1p_B* 2p1q_B* 3c6n_B* 3c6o_B* 3c6p_B*

Probab=99.97  E-value=2.4e-30  Score=257.45  Aligned_cols=419  Identities=19%  Similarity=0.181  Sum_probs=312.1

Q ss_pred             ceeEEecCCCC-------------CCCHHHHHHHHhcCCCccEEEecCCCCChHhhHhhh-cCCCCCEEecCCCcccChh
Q 012186           32 ALQDLCLGQYP-------------GVNDKWMDVIASQGSSLLSVDLSGSDVTDSGLIHLK-DCSNLQSLDFNFCIQISDG   97 (469)
Q Consensus        32 ~~~~l~~~~~~-------------~~~~~~~~~~~~~~~~l~~L~l~~~~~~~~~~~~~~-~~~~L~~L~l~~~~~~~~~   97 (469)
                      .++.+.+..++             +....|...+...++++++|+++++.+++..+..+. .+++|++|++++|..++..
T Consensus        67 ~L~~L~L~~~~~~~~~~l~~~~~~~~~~~~l~~l~~~~~~L~~L~L~~~~~~~~~~~~l~~~~~~L~~L~L~~~~~~~~~  146 (594)
T 2p1m_B           67 KVRSVELKGKPHFADFNLVPDGWGGYVYPWIEAMSSSYTWLEEIRLKRMVVTDDCLELIAKSFKNFKVLVLSSCEGFSTD  146 (594)
T ss_dssp             TCCEEEEECSCGGGGGTCSCTTSCCBCHHHHHHHHHHCTTCCEEEEESCBCCHHHHHHHHHHCTTCCEEEEESCEEEEHH
T ss_pred             CceEEeccCCCchhhcccccccccchhhHHHHHHHHhCCCCCeEEeeCcEEcHHHHHHHHHhCCCCcEEeCCCcCCCCHH
Confidence            36666665543             334567777888899999999999999998888775 7999999999998777776


Q ss_pred             HhHhh-hCCCCCCEEeCCCCCcCcHHHHH----HHhCCCCCCEEeccccc-ccc-ccc-ccccCCCCccEEEccCCCCCC
Q 012186           98 GLEHL-RGLSNLTSLSFRRNNAITAQGMK----AFAGLINLVKLDLERCT-RIH-GGL-VNLKGLMKLESLNIKWCNCIT  169 (469)
Q Consensus        98 ~~~~l-~~~~~L~~L~l~~~~~~~~~~~~----~~~~l~~L~~L~l~~~~-~~~-~~~-~~l~~l~~L~~L~l~~~~~~~  169 (469)
                      ....+ .++++|++|++++|.+ +...+.    ....+++|++|++++|. .+. ... .....+++|++|++.+|....
T Consensus       147 ~l~~~~~~~~~L~~L~L~~~~i-~~~~~~~l~~~~~~~~~L~~L~l~~~~~~~~~~~l~~l~~~~~~L~~L~L~~~~~~~  225 (594)
T 2p1m_B          147 GLAAIAATCRNLKELDLRESDV-DDVSGHWLSHFPDTYTSLVSLNISCLASEVSFSALERLVTRCPNLKSLKLNRAVPLE  225 (594)
T ss_dssp             HHHHHHHHCTTCCEEECTTCEE-ECCCGGGGGGSCTTCCCCCEEECTTCCSCCCHHHHHHHHHHCTTCCEEECCTTSCHH
T ss_pred             HHHHHHHhCCCCCEEeCcCCcc-CCcchHHHHHHhhcCCcCcEEEecccCCcCCHHHHHHHHHhCCCCcEEecCCCCcHH
Confidence            55554 5899999999999873 222222    23367899999999875 111 111 223568999999999975544


Q ss_pred             hhhhhcccCCCCCCEEEecccc-------cChhhhhhccCCCCCCee-eccCCCCchhhHHhhhcCCCCcEEECCCCCCC
Q 012186          170 DSDMKPLSGLTNLKSLQISCSK-------VTDSGIAYLKGLQKLTLL-NLEGCPVTAACLDSLSALGSLFYLNLNRCQLS  241 (469)
Q Consensus       170 ~~~~~~~~~~~~L~~L~l~~~~-------~~~~~~~~l~~l~~L~~L-~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~  241 (469)
                      . .+..+..+++|+.|++..+.       +.. ....+.++++|+.+ .+.+... ...+..+..+++|++|++++|.+.
T Consensus       226 ~-l~~~~~~~~~L~~L~l~~~~~~~~~~~~~~-l~~~l~~~~~L~~Ls~~~~~~~-~~l~~~~~~~~~L~~L~L~~~~l~  302 (594)
T 2p1m_B          226 K-LATLLQRAPQLEELGTGGYTAEVRPDVYSG-LSVALSGCKELRCLSGFWDAVP-AYLPAVYSVCSRLTTLNLSYATVQ  302 (594)
T ss_dssp             H-HHHHHHHCTTCSEEECSBCCCCCCHHHHHH-HHHHHHTCTTCCEEECCBTCCG-GGGGGGHHHHTTCCEEECTTCCCC
T ss_pred             H-HHHHHhcCCcceEcccccccCccchhhHHH-HHHHHhcCCCcccccCCcccch-hhHHHHHHhhCCCCEEEccCCCCC
Confidence            4 55666789999999976543       222 23467889999999 4444322 223444456899999999999987


Q ss_pred             hhHHHH-hhcCCCccEEEccCCCCchHHHH-HhhCCCCCCEEecC---------CCCCChHHHHHhh-CCCCCCEEeccC
Q 012186          242 DDGCEK-FSKIGSLKVLNLGFNEITDECLV-HLKGLTNLESLNLD---------SCGIGDEGLVNLT-GLCNLKCLELSD  309 (469)
Q Consensus       242 ~~~~~~-~~~~~~L~~L~l~~~~~~~~~~~-~~~~l~~L~~L~l~---------~~~~~~~~~~~~~-~~~~L~~L~l~~  309 (469)
                      ...... +..+++|+.|++.++ +.+.... ....+++|+.|++.         .+.++......+. .+++|+.|.+..
T Consensus       303 ~~~l~~~~~~~~~L~~L~l~~~-~~~~~l~~l~~~~~~L~~L~L~~~~~~g~~~~~~l~~~~l~~l~~~~~~L~~L~~~~  381 (594)
T 2p1m_B          303 SYDLVKLLCQCPKLQRLWVLDY-IEDAGLEVLASTCKDLRELRVFPSEPFVMEPNVALTEQGLVSVSMGCPKLESVLYFC  381 (594)
T ss_dssp             HHHHHHHHTTCTTCCEEEEEGG-GHHHHHHHHHHHCTTCCEEEEECSCTTCSSCSSCCCHHHHHHHHHHCTTCCEEEEEE
T ss_pred             HHHHHHHHhcCCCcCEEeCcCc-cCHHHHHHHHHhCCCCCEEEEecCcccccccCCCCCHHHHHHHHHhchhHHHHHHhc
Confidence            665443 568999999999988 4433333 33568999999993         3466666665555 489999999988


Q ss_pred             CCCChhhHHHhh-CCCCCcEEecc--c----CCCC----ch-HHHhhhCCCCCcEEEccCCCCCHHHHHHHhc-CCCCCE
Q 012186          310 TQVGSSGLRHLS-GLTNLESINLS--F----TGIS----DG-SLRKLAGLSSLKSLNLDARQITDTGLAALTS-LTGLTH  376 (469)
Q Consensus       310 ~~~~~~~~~~~~-~~~~L~~L~l~--~----~~~~----~~-~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~-~~~L~~  376 (469)
                      +.++......+. .+++|+.|+++  +    +.++    +. ....+..+++|+.|++++ .++...+..+.. +++|+.
T Consensus       382 ~~l~~~~~~~l~~~~~~L~~L~L~~~~~~~~~~l~~~~~~~~~~~l~~~~~~L~~L~L~~-~l~~~~~~~l~~~~~~L~~  460 (594)
T 2p1m_B          382 RQMTNAALITIARNRPNMTRFRLCIIEPKAPDYLTLEPLDIGFGAIVEHCKDLRRLSLSG-LLTDKVFEYIGTYAKKMEM  460 (594)
T ss_dssp             SCCCHHHHHHHHHHCTTCCEEEEEESSTTCCCTTTCCCTHHHHHHHHHHCTTCCEEECCS-SCCHHHHHHHHHHCTTCCE
T ss_pred             CCcCHHHHHHHHhhCCCcceeEeecccCCCcccccCCchhhHHHHHHhhCCCccEEeecC-cccHHHHHHHHHhchhccE
Confidence            888887776665 69999999999  3    3555    22 223356789999999987 888877777765 999999


Q ss_pred             eecCCCCCChhHHHHh-HcCCCCCeeeeCCCCCCHHHHHHH-hcCCCCCeeeccCCCCCChhHHHHH-HhCccccccccc
Q 012186          377 LDLFGARITDSGAAYL-RNFKNLRSLEICGGGLTDAGVKHI-KDLSSLTLLNLSQNCNLTDKTLELI-SGLTGLVSLNVS  453 (469)
Q Consensus       377 L~l~~~~~~~~~~~~~-~~~~~L~~L~l~~~~~~~~~~~~l-~~~~~L~~L~l~~~~~l~~~~~~~l-~~l~~L~~L~l~  453 (469)
                      |++++|.+++.....+ ..+++|+.|++++|.+++..+..+ ..+++|++|++++| .++......+ ..+|.|+...+.
T Consensus       461 L~L~~~~i~~~~~~~l~~~~~~L~~L~L~~n~~~~~~~~~~~~~l~~L~~L~l~~~-~~~~~~~~~l~~~lp~l~i~~~~  539 (594)
T 2p1m_B          461 LSVAFAGDSDLGMHHVLSGCDSLRKLEIRDCPFGDKALLANASKLETMRSLWMSSC-SVSFGACKLLGQKMPKLNVEVID  539 (594)
T ss_dssp             EEEESCCSSHHHHHHHHHHCTTCCEEEEESCSCCHHHHHHTGGGGGGSSEEEEESS-CCBHHHHHHHHHHCTTEEEEEEC
T ss_pred             eeccCCCCcHHHHHHHHhcCCCcCEEECcCCCCcHHHHHHHHHhCCCCCEEeeeCC-CCCHHHHHHHHHhCCCCEEEEec
Confidence            9999999998777766 779999999999999988766544 56899999999999 5577666666 578888776666


Q ss_pred             CCCC
Q 012186          454 NSRI  457 (469)
Q Consensus       454 ~~~~  457 (469)
                      .+.-
T Consensus       540 ~~~~  543 (594)
T 2p1m_B          540 ERGA  543 (594)
T ss_dssp             SSSC
T ss_pred             CCCc
Confidence            5543

>2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens}

Probab=99.97  E-value=2.3e-32  Score=264.17  Aligned_cols=302  Identities=22%  Similarity=0.219  Sum_probs=263.7

Q ss_pred             CCCCEEeCCCCCcCcHHHHHHHhCCCCCCEEecccccccccccccccCCCCccEEEccCCCCCChhhhhcccCCCCCCEE
Q 012186          106 SNLTSLSFRRNNAITAQGMKAFAGLINLVKLDLERCTRIHGGLVNLKGLMKLESLNIKWCNCITDSDMKPLSGLTNLKSL  185 (469)
Q Consensus       106 ~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L  185 (469)
                      +++++|++++|.+ ....+..|..+++|++|++++|......+..+.++++|++|+++++. +.......+.++++|++|
T Consensus        32 ~~l~~L~L~~n~l-~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~-l~~~~~~~~~~l~~L~~L  109 (477)
T 2id5_A           32 TETRLLDLGKNRI-KTLNQDEFASFPHLEELELNENIVSAVEPGAFNNLFNLRTLGLRSNR-LKLIPLGVFTGLSNLTKL  109 (477)
T ss_dssp             TTCSEEECCSSCC-CEECTTTTTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSC-CCSCCTTSSTTCTTCCEE
T ss_pred             CCCcEEECCCCcc-ceECHhHccCCCCCCEEECCCCccCEeChhhhhCCccCCEEECCCCc-CCccCcccccCCCCCCEE
Confidence            5899999999974 45556788999999999999986555557789999999999999854 565556678899999999


Q ss_pred             EecccccChhhhhhccCCCCCCeeeccCCCCchhhHHhhhcCCCCcEEECCCCCCChhHHHHhhcCCCccEEEccCCCCc
Q 012186          186 QISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACLDSLSALGSLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEIT  265 (469)
Q Consensus       186 ~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~  265 (469)
                      ++++|.+.......+..+++|++|++++|.+....+..+..+++|+.|++.+|.+.......+..+++|+.|++++|.+.
T Consensus       110 ~Ls~n~i~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~i~  189 (477)
T 2id5_A          110 DISENKIVILLDYMFQDLYNLKSLEVGDNDLVYISHRAFSGLNSLEQLTLEKCNLTSIPTEALSHLHGLIVLRLRHLNIN  189 (477)
T ss_dssp             ECTTSCCCEECTTTTTTCTTCCEEEECCTTCCEECTTSSTTCTTCCEEEEESCCCSSCCHHHHTTCTTCCEEEEESCCCC
T ss_pred             ECCCCccccCChhHccccccCCEEECCCCccceeChhhccCCCCCCEEECCCCcCcccChhHhcccCCCcEEeCCCCcCc
Confidence            99999998877788899999999999999988877778999999999999999998877778899999999999999988


Q ss_pred             hHHHHHhhCCCCCCEEecCCCCCChHHHHHhhCCCCCCEEeccCCCCChhhHHHhhCCCCCcEEecccCCCCchHHHhhh
Q 012186          266 DECLVHLKGLTNLESLNLDSCGIGDEGLVNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISDGSLRKLA  345 (469)
Q Consensus       266 ~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~  345 (469)
                      ...+..+..+++|+.|++++|......+.......+|+.|++++|.+.......+..+++|+.|++++|.+....+..+.
T Consensus       190 ~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~  269 (477)
T 2id5_A          190 AIRDYSFKRLYRLKVLEISHWPYLDTMTPNCLYGLNLTSLSITHCNLTAVPYLAVRHLVYLRFLNLSYNPISTIEGSMLH  269 (477)
T ss_dssp             EECTTCSCSCTTCCEEEEECCTTCCEECTTTTTTCCCSEEEEESSCCCSCCHHHHTTCTTCCEEECCSSCCCEECTTSCT
T ss_pred             EeChhhcccCcccceeeCCCCccccccCcccccCccccEEECcCCcccccCHHHhcCccccCeeECCCCcCCccChhhcc
Confidence            76666788899999999999865544444444556999999999999888778889999999999999999888777888


Q ss_pred             CCCCCcEEEccCCCCCHHHHHHHhcCCCCCEeecCCCCCChhHHHHhHcCCCCCeeeeCCCCCC
Q 012186          346 GLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLFGARITDSGAAYLRNFKNLRSLEICGGGLT  409 (469)
Q Consensus       346 ~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~  409 (469)
                      .+++|+.|++++|.++...+..+..+++|++|++++|.+++..+..+..+++|+.|++++|.+.
T Consensus       270 ~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~l~  333 (477)
T 2id5_A          270 ELLRLQEIQLVGGQLAVVEPYAFRGLNYLRVLNVSGNQLTTLEESVFHSVGNLETLILDSNPLA  333 (477)
T ss_dssp             TCTTCCEEECCSSCCSEECTTTBTTCTTCCEEECCSSCCSCCCGGGBSCGGGCCEEECCSSCEE
T ss_pred             ccccCCEEECCCCccceECHHHhcCcccCCEEECCCCcCceeCHhHcCCCcccCEEEccCCCcc
Confidence            9999999999999999887788889999999999999999988888888999999999999876

>3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae}

Probab=99.97  E-value=1.5e-31  Score=251.52  Aligned_cols=313  Identities=16%  Similarity=0.163  Sum_probs=240.9

Q ss_pred             CCCCCCEEeCCCCCcCcHHHHHHHhCCCCCCEEecccccccccccccccCCCCccEEEccCCCCCChhhhhcccCCCCCC
Q 012186          104 GLSNLTSLSFRRNNAITAQGMKAFAGLINLVKLDLERCTRIHGGLVNLKGLMKLESLNIKWCNCITDSDMKPLSGLTNLK  183 (469)
Q Consensus       104 ~~~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~L~  183 (469)
                      .++++++|+++++.+ ....+..+..+++|++|++++|......+..+..+++|++|+++++. +....+..+..+++|+
T Consensus        43 ~l~~l~~l~l~~~~l-~~l~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~-l~~~~~~~~~~l~~L~  120 (390)
T 3o6n_A           43 TLNNQKIVTFKNSTM-RKLPAALLDSFRQVELLNLNDLQIEEIDTYAFAYAHTIQKLYMGFNA-IRYLPPHVFQNVPLLT  120 (390)
T ss_dssp             GGCCCSEEEEESCEE-SEECTHHHHHCCCCSEEECTTSCCCEECTTTTTTCTTCCEEECCSSC-CCCCCTTTTTTCTTCC
T ss_pred             ccCCceEEEecCCch-hhCChhHhcccccCcEEECCCCcccccChhhccCCCCcCEEECCCCC-CCcCCHHHhcCCCCCC
Confidence            467899999998864 44445667889999999999986444444578899999999999854 5556667788899999


Q ss_pred             EEEecccccChhhhhhccCCCCCCeeeccCCCCchhhHHhhhcCCCCcEEECCCCCCChhHHHHhhcCCCccEEEccCCC
Q 012186          184 SLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACLDSLSALGSLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFNE  263 (469)
Q Consensus       184 ~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~  263 (469)
                      +|++++|.++..+...+..+++|++|++++|.+....+..+..+++|+.|++++|.+...   .+..+++|+.+++++|.
T Consensus       121 ~L~L~~n~l~~l~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~---~~~~l~~L~~L~l~~n~  197 (390)
T 3o6n_A          121 VLVLERNDLSSLPRGIFHNTPKLTTLSMSNNNLERIEDDTFQATTSLQNLQLSSNRLTHV---DLSLIPSLFHANVSYNL  197 (390)
T ss_dssp             EEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCBCCTTTTSSCTTCCEEECCSSCCSBC---CGGGCTTCSEEECCSSC
T ss_pred             EEECCCCccCcCCHHHhcCCCCCcEEECCCCccCccChhhccCCCCCCEEECCCCcCCcc---ccccccccceeeccccc
Confidence            999999988876666678899999999999988877677788899999999999888764   25667889999999887


Q ss_pred             CchHHHHHhhCCCCCCEEecCCCCCChHHHHHhhCCCCCCEEeccCCCCChhhHHHhhCCCCCcEEecccCCCCchHHHh
Q 012186          264 ITDECLVHLKGLTNLESLNLDSCGIGDEGLVNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISDGSLRK  343 (469)
Q Consensus       264 ~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~  343 (469)
                      +..     +...++|+.|++++|.+.....   ...++|+.|++.+|.+...  ..+..+++|+.|++++|.+.+..+..
T Consensus       198 l~~-----~~~~~~L~~L~l~~n~l~~~~~---~~~~~L~~L~l~~n~l~~~--~~l~~l~~L~~L~Ls~n~l~~~~~~~  267 (390)
T 3o6n_A          198 LST-----LAIPIAVEELDASHNSINVVRG---PVNVELTILKLQHNNLTDT--AWLLNYPGLVEVDLSYNELEKIMYHP  267 (390)
T ss_dssp             CSE-----EECCSSCSEEECCSSCCCEEEC---CCCSSCCEEECCSSCCCCC--GGGGGCTTCSEEECCSSCCCEEESGG
T ss_pred             ccc-----cCCCCcceEEECCCCeeeeccc---cccccccEEECCCCCCccc--HHHcCCCCccEEECCCCcCCCcChhH
Confidence            764     3455688899998887765421   2356888888888877764  46778888888888888888777777


Q ss_pred             hhCCCCCcEEEccCCCCCHHHHHHHhcCCCCCEeecCCCCCChhHHHHhHcCCCCCeeeeCCCCCCHHHHHHHhcCCCCC
Q 012186          344 LAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLFGARITDSGAAYLRNFKNLRSLEICGGGLTDAGVKHIKDLSSLT  423 (469)
Q Consensus       344 ~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~  423 (469)
                      +..+++|+.|++++|.++... ..+..+++|++|++++|+++.. +..+..+++|+.|++++|.++...   +..+++|+
T Consensus       268 ~~~l~~L~~L~L~~n~l~~~~-~~~~~l~~L~~L~L~~n~l~~~-~~~~~~l~~L~~L~L~~N~i~~~~---~~~~~~L~  342 (390)
T 3o6n_A          268 FVKMQRLERLYISNNRLVALN-LYGQPIPTLKVLDLSHNHLLHV-ERNQPQFDRLENLYLDHNSIVTLK---LSTHHTLK  342 (390)
T ss_dssp             GTTCSSCCEEECCSSCCCEEE-CSSSCCTTCCEEECCSSCCCCC-GGGHHHHTTCSEEECCSSCCCCCC---CCTTCCCS
T ss_pred             ccccccCCEEECCCCcCcccC-cccCCCCCCCEEECCCCcceec-CccccccCcCCEEECCCCccceeC---chhhccCC
Confidence            888888888888888887642 2335678888888888887754 445667788888888888877652   55677888


Q ss_pred             eeeccCCCCCChhH
Q 012186          424 LLNLSQNCNLTDKT  437 (469)
Q Consensus       424 ~L~l~~~~~l~~~~  437 (469)
                      +|++++| .+....
T Consensus       343 ~L~l~~N-~~~~~~  355 (390)
T 3o6n_A          343 NLTLSHN-DWDCNS  355 (390)
T ss_dssp             EEECCSS-CEEHHH
T ss_pred             EEEcCCC-Cccchh
Confidence            8888888 455433

>3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae}

Probab=99.97  E-value=3.2e-30  Score=242.47  Aligned_cols=317  Identities=16%  Similarity=0.113  Sum_probs=257.6

Q ss_pred             cCCCCCEEecCCCcccChhHhHhhhCCCCCCEEeCCCCCcCcHHHHHHHhCCCCCCEEecccccccccccccccCCCCcc
Q 012186           79 DCSNLQSLDFNFCIQISDGGLEHLRGLSNLTSLSFRRNNAITAQGMKAFAGLINLVKLDLERCTRIHGGLVNLKGLMKLE  158 (469)
Q Consensus        79 ~~~~L~~L~l~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~  158 (469)
                      .+++++.|+++++ .++......+..+++|++|++++|.+ ....+..+..+++|++|++++|......+..+..+++|+
T Consensus        43 ~l~~l~~l~l~~~-~l~~l~~~~~~~l~~L~~L~L~~n~i-~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~  120 (390)
T 3o6n_A           43 TLNNQKIVTFKNS-TMRKLPAALLDSFRQVELLNLNDLQI-EEIDTYAFAYAHTIQKLYMGFNAIRYLPPHVFQNVPLLT  120 (390)
T ss_dssp             GGCCCSEEEEESC-EESEECTHHHHHCCCCSEEECTTSCC-CEECTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCC
T ss_pred             ccCCceEEEecCC-chhhCChhHhcccccCcEEECCCCcc-cccChhhccCCCCcCEEECCCCCCCcCCHHHhcCCCCCC
Confidence            5689999999984 57776667788999999999999874 445556788999999999999865545556688999999


Q ss_pred             EEEccCCCCCChhhhhcccCCCCCCEEEecccccChhhhhhccCCCCCCeeeccCCCCchhhHHhhhcCCCCcEEECCCC
Q 012186          159 SLNIKWCNCITDSDMKPLSGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACLDSLSALGSLFYLNLNRC  238 (469)
Q Consensus       159 ~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~  238 (469)
                      +|+++++. +.......+..+++|++|++++|.+....+..+..+++|++|++++|.+...   .+..+++|+.+++++|
T Consensus       121 ~L~L~~n~-l~~l~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~---~~~~l~~L~~L~l~~n  196 (390)
T 3o6n_A          121 VLVLERND-LSSLPRGIFHNTPKLTTLSMSNNNLERIEDDTFQATTSLQNLQLSSNRLTHV---DLSLIPSLFHANVSYN  196 (390)
T ss_dssp             EEECCSSC-CCCCCTTTTTTCTTCCEEECCSSCCCBCCTTTTSSCTTCCEEECCSSCCSBC---CGGGCTTCSEEECCSS
T ss_pred             EEECCCCc-cCcCCHHHhcCCCCCcEEECCCCccCccChhhccCCCCCCEEECCCCcCCcc---ccccccccceeecccc
Confidence            99999854 5544445568899999999999999877777789999999999999988765   3567899999999998


Q ss_pred             CCChhHHHHhhcCCCccEEEccCCCCchHHHHHhhCCCCCCEEecCCCCCChHHHHHhhCCCCCCEEeccCCCCChhhHH
Q 012186          239 QLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNLDSCGIGDEGLVNLTGLCNLKCLELSDTQVGSSGLR  318 (469)
Q Consensus       239 ~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~  318 (469)
                      .+..     +...++|+.|++++|.+....   ....++|+.|++++|.+...  ..+..+++|++|++++|.+....+.
T Consensus       197 ~l~~-----~~~~~~L~~L~l~~n~l~~~~---~~~~~~L~~L~l~~n~l~~~--~~l~~l~~L~~L~Ls~n~l~~~~~~  266 (390)
T 3o6n_A          197 LLST-----LAIPIAVEELDASHNSINVVR---GPVNVELTILKLQHNNLTDT--AWLLNYPGLVEVDLSYNELEKIMYH  266 (390)
T ss_dssp             CCSE-----EECCSSCSEEECCSSCCCEEE---CCCCSSCCEEECCSSCCCCC--GGGGGCTTCSEEECCSSCCCEEESG
T ss_pred             cccc-----cCCCCcceEEECCCCeeeecc---ccccccccEEECCCCCCccc--HHHcCCCCccEEECCCCcCCCcChh
Confidence            8764     345678999999999887542   13357899999999988764  4678899999999999999887778


Q ss_pred             HhhCCCCCcEEecccCCCCchHHHhhhCCCCCcEEEccCCCCCHHHHHHHhcCCCCCEeecCCCCCChhHHHHhHcCCCC
Q 012186          319 HLSGLTNLESINLSFTGISDGSLRKLAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLFGARITDSGAAYLRNFKNL  398 (469)
Q Consensus       319 ~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L  398 (469)
                      .+..+++|+.|++++|.+.... ..+..+++|+.|++++|.++.. +..+..+++|++|++++|++++..   +..+++|
T Consensus       267 ~~~~l~~L~~L~L~~n~l~~~~-~~~~~l~~L~~L~L~~n~l~~~-~~~~~~l~~L~~L~L~~N~i~~~~---~~~~~~L  341 (390)
T 3o6n_A          267 PFVKMQRLERLYISNNRLVALN-LYGQPIPTLKVLDLSHNHLLHV-ERNQPQFDRLENLYLDHNSIVTLK---LSTHHTL  341 (390)
T ss_dssp             GGTTCSSCCEEECCSSCCCEEE-CSSSCCTTCCEEECCSSCCCCC-GGGHHHHTTCSEEECCSSCCCCCC---CCTTCCC
T ss_pred             HccccccCCEEECCCCcCcccC-cccCCCCCCCEEECCCCcceec-CccccccCcCCEEECCCCccceeC---chhhccC
Confidence            8889999999999999887643 3446789999999999998865 334667899999999999988763   6678999


Q ss_pred             CeeeeCCCCCCHHHHHHH
Q 012186          399 RSLEICGGGLTDAGVKHI  416 (469)
Q Consensus       399 ~~L~l~~~~~~~~~~~~l  416 (469)
                      +.|++++|.+.......+
T Consensus       342 ~~L~l~~N~~~~~~~~~~  359 (390)
T 3o6n_A          342 KNLTLSHNDWDCNSLRAL  359 (390)
T ss_dssp             SEEECCSSCEEHHHHHHH
T ss_pred             CEEEcCCCCccchhHHHH
Confidence            999999999987655443

>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}

Probab=99.97  E-value=1.5e-30  Score=257.65  Aligned_cols=313  Identities=16%  Similarity=0.157  Sum_probs=251.9

Q ss_pred             CCCCCCEEeCCCCCcCcHHHHHHHhCCCCCCEEecccccccccccccccCCCCccEEEccCCCCCChhhhhcccCCCCCC
Q 012186          104 GLSNLTSLSFRRNNAITAQGMKAFAGLINLVKLDLERCTRIHGGLVNLKGLMKLESLNIKWCNCITDSDMKPLSGLTNLK  183 (469)
Q Consensus       104 ~~~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~L~  183 (469)
                      .+.+++.++++++.+ ....+..+..+++|++|++++|......+..+..+++|++|++++|. +....+..++.+++|+
T Consensus        49 ~l~~l~~l~l~~~~l-~~lp~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~-l~~~~~~~~~~l~~L~  126 (597)
T 3oja_B           49 TLNNQKIVTFKNSTM-RKLPAALLDSFRQVELLNLNDLQIEEIDTYAFAYAHTIQKLYMGFNA-IRYLPPHVFQNVPLLT  126 (597)
T ss_dssp             GGCCCSEEEESSCEE-SEECTHHHHHCCCCSEEECTTSCCCEECTTTTTTCTTCCEEECCSSC-CCCCCTTTTTTCTTCC
T ss_pred             cCCCceEEEeeCCCC-CCcCHHHHccCCCCcEEECCCCCCCCCChHHhcCCCCCCEEECCCCc-CCCCCHHHHcCCCCCC
Confidence            367899999998864 44555678889999999999986444444588999999999999854 6666667788999999


Q ss_pred             EEEecccccChhhhhhccCCCCCCeeeccCCCCchhhHHhhhcCCCCcEEECCCCCCChhHHHHhhcCCCccEEEccCCC
Q 012186          184 SLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACLDSLSALGSLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFNE  263 (469)
Q Consensus       184 ~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~  263 (469)
                      +|++++|.++..+...+..+++|++|++++|.+....+..+..+++|+.|++++|.+....   +..+++|+.|++++|.
T Consensus       127 ~L~L~~n~l~~l~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~---~~~l~~L~~L~l~~n~  203 (597)
T 3oja_B          127 VLVLERNDLSSLPRGIFHNTPKLTTLSMSNNNLERIEDDTFQATTSLQNLQLSSNRLTHVD---LSLIPSLFHANVSYNL  203 (597)
T ss_dssp             EEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCBCCTTTTTTCTTCCEEECTTSCCSBCC---GGGCTTCSEEECCSSC
T ss_pred             EEEeeCCCCCCCCHHHhccCCCCCEEEeeCCcCCCCChhhhhcCCcCcEEECcCCCCCCcC---hhhhhhhhhhhcccCc
Confidence            9999999998777777889999999999999988877778899999999999999887643   5667899999999988


Q ss_pred             CchHHHHHhhCCCCCCEEecCCCCCChHHHHHhhCCCCCCEEeccCCCCChhhHHHhhCCCCCcEEecccCCCCchHHHh
Q 012186          264 ITDECLVHLKGLTNLESLNLDSCGIGDEGLVNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISDGSLRK  343 (469)
Q Consensus       264 ~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~  343 (469)
                      +..     +...++|+.|++++|.+.....   ...++|+.|++++|.+...  ..+..+++|+.|++++|.+....+..
T Consensus       204 l~~-----l~~~~~L~~L~ls~n~l~~~~~---~~~~~L~~L~L~~n~l~~~--~~l~~l~~L~~L~Ls~N~l~~~~~~~  273 (597)
T 3oja_B          204 LST-----LAIPIAVEELDASHNSINVVRG---PVNVELTILKLQHNNLTDT--AWLLNYPGLVEVDLSYNELEKIMYHP  273 (597)
T ss_dssp             CSE-----EECCTTCSEEECCSSCCCEEEC---SCCSCCCEEECCSSCCCCC--GGGGGCTTCSEEECCSSCCCEEESGG
T ss_pred             ccc-----ccCCchhheeeccCCccccccc---ccCCCCCEEECCCCCCCCC--hhhccCCCCCEEECCCCccCCCCHHH
Confidence            764     4556789999999988764322   2346899999999988763  56788899999999999888887788


Q ss_pred             hhCCCCCcEEEccCCCCCHHHHHHHhcCCCCCEeecCCCCCChhHHHHhHcCCCCCeeeeCCCCCCHHHHHHHhcCCCCC
Q 012186          344 LAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLFGARITDSGAAYLRNFKNLRSLEICGGGLTDAGVKHIKDLSSLT  423 (469)
Q Consensus       344 ~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~  423 (469)
                      +..+++|+.|++++|.++.. +..+..+++|+.|++++|.++. +|..+..+++|+.|++++|.++...   +..+++|+
T Consensus       274 ~~~l~~L~~L~Ls~N~l~~l-~~~~~~l~~L~~L~Ls~N~l~~-i~~~~~~l~~L~~L~L~~N~l~~~~---~~~~~~L~  348 (597)
T 3oja_B          274 FVKMQRLERLYISNNRLVAL-NLYGQPIPTLKVLDLSHNHLLH-VERNQPQFDRLENLYLDHNSIVTLK---LSTHHTLK  348 (597)
T ss_dssp             GTTCSSCCEEECTTSCCCEE-ECSSSCCTTCCEEECCSSCCCC-CGGGHHHHTTCSEEECCSSCCCCCC---CCTTCCCS
T ss_pred             hcCccCCCEEECCCCCCCCC-CcccccCCCCcEEECCCCCCCc-cCcccccCCCCCEEECCCCCCCCcC---hhhcCCCC
Confidence            88889999999999888875 3334568899999999998885 4556778889999999998887762   56688899


Q ss_pred             eeeccCCCCCChhH
Q 012186          424 LLNLSQNCNLTDKT  437 (469)
Q Consensus       424 ~L~l~~~~~l~~~~  437 (469)
                      .|++++| .+....
T Consensus       349 ~L~l~~N-~~~~~~  361 (597)
T 3oja_B          349 NLTLSHN-DWDCNS  361 (597)
T ss_dssp             EEECCSS-CEEHHH
T ss_pred             EEEeeCC-CCCChh
Confidence            9999998 444433

>3bz5_A Internalin-J, INLJ; leucine rich repeat (LRR), cysteine ladder, asparagine ladder, virulence factor, solenoid, cell WALL; 2.70A {Listeria monocytogenes}

Probab=99.97  E-value=9.1e-30  Score=242.68  Aligned_cols=337  Identities=19%  Similarity=0.139  Sum_probs=220.5

Q ss_pred             CCCccEEEecCCCCChHhhHhhhcCCCCCEEecCCCcccChhHhHhhhCCCCCCEEeCCCCCcCcHHHHHHHhCCCCCCE
Q 012186           56 GSSLLSVDLSGSDVTDSGLIHLKDCSNLQSLDFNFCIQISDGGLEHLRGLSNLTSLSFRRNNAITAQGMKAFAGLINLVK  135 (469)
Q Consensus        56 ~~~l~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~  135 (469)
                      .+++++|+++++.+++. | .+..+++|++|++++| .++..   .++.+++|++|++++|.+...  +  ++.+++|++
T Consensus        41 l~~L~~L~Ls~n~l~~~-~-~l~~l~~L~~L~Ls~n-~l~~~---~~~~l~~L~~L~Ls~N~l~~~--~--~~~l~~L~~  110 (457)
T 3bz5_A           41 LATLTSLDCHNSSITDM-T-GIEKLTGLTKLICTSN-NITTL---DLSQNTNLTYLACDSNKLTNL--D--VTPLTKLTY  110 (457)
T ss_dssp             HTTCCEEECCSSCCCCC-T-TGGGCTTCSEEECCSS-CCSCC---CCTTCTTCSEEECCSSCCSCC--C--CTTCTTCCE
T ss_pred             cCCCCEEEccCCCcccC-h-hhcccCCCCEEEccCC-cCCeE---ccccCCCCCEEECcCCCCcee--e--cCCCCcCCE
Confidence            46889999998888764 4 6788899999999885 46554   278888999999998875332  2  778889999


Q ss_pred             EecccccccccccccccCCCCccEEEccCCCCCChhhhhcccCCCCCCEEEecccccChhhhhhccCCCCCCeeeccCCC
Q 012186          136 LDLERCTRIHGGLVNLKGLMKLESLNIKWCNCITDSDMKPLSGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCP  215 (469)
Q Consensus       136 L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~  215 (469)
                      |++++|. +...+  +..+++|++|+++++. +...   .++.+++|++|++++|...+..  .+..+++|++|++++|.
T Consensus       111 L~L~~N~-l~~l~--~~~l~~L~~L~l~~N~-l~~l---~l~~l~~L~~L~l~~n~~~~~~--~~~~l~~L~~L~ls~n~  181 (457)
T 3bz5_A          111 LNCDTNK-LTKLD--VSQNPLLTYLNCARNT-LTEI---DVSHNTQLTELDCHLNKKITKL--DVTPQTQLTTLDCSFNK  181 (457)
T ss_dssp             EECCSSC-CSCCC--CTTCTTCCEEECTTSC-CSCC---CCTTCTTCCEEECTTCSCCCCC--CCTTCTTCCEEECCSSC
T ss_pred             EECCCCc-CCeec--CCCCCcCCEEECCCCc-ccee---ccccCCcCCEEECCCCCccccc--ccccCCcCCEEECCCCc
Confidence            9998874 33332  7888889999998854 4432   3677888999998888433222  46778888899998888


Q ss_pred             CchhhHHhhhcCCCCcEEECCCCCCChhHHHHhhcCCCccEEEccCCCCchHHHHHhhCCCCCCEEecCCCCCChHHHHH
Q 012186          216 VTAACLDSLSALGSLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNLDSCGIGDEGLVN  295 (469)
Q Consensus       216 ~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~  295 (469)
                      ++...   +..+++|+.|++++|.+...   .+..+++|+.|++++|.+++. +  +..+++|+.|++++|.+....   
T Consensus       182 l~~l~---l~~l~~L~~L~l~~N~l~~~---~l~~l~~L~~L~Ls~N~l~~i-p--~~~l~~L~~L~l~~N~l~~~~---  249 (457)
T 3bz5_A          182 ITELD---VSQNKLLNRLNCDTNNITKL---DLNQNIQLTFLDCSSNKLTEI-D--VTPLTQLTYFDCSVNPLTELD---  249 (457)
T ss_dssp             CCCCC---CTTCTTCCEEECCSSCCSCC---CCTTCTTCSEEECCSSCCSCC-C--CTTCTTCSEEECCSSCCSCCC---
T ss_pred             cceec---cccCCCCCEEECcCCcCCee---ccccCCCCCEEECcCCccccc-C--ccccCCCCEEEeeCCcCCCcC---
Confidence            77742   77788888898888887764   367788888888888888763 3  677888888888888776543   


Q ss_pred             hhCCCCCCEEeccCCCCC----------hhhHHHhhCCCCCcEEecccCCCCchHHHhhhCCCCCcEEEccCCCCCHHHH
Q 012186          296 LTGLCNLKCLELSDTQVG----------SSGLRHLSGLTNLESINLSFTGISDGSLRKLAGLSSLKSLNLDARQITDTGL  365 (469)
Q Consensus       296 ~~~~~~L~~L~l~~~~~~----------~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~  365 (469)
                      +..+++|+.|++.++.+.          ...+  ++.+++|+.|++++|......+.   ..++|+.|++          
T Consensus       250 ~~~l~~L~~L~l~~n~L~~L~l~~n~~~~~~~--~~~l~~L~~L~Ls~n~~l~~l~~---~~~~L~~L~l----------  314 (457)
T 3bz5_A          250 VSTLSKLTTLHCIQTDLLEIDLTHNTQLIYFQ--AEGCRKIKELDVTHNTQLYLLDC---QAAGITELDL----------  314 (457)
T ss_dssp             CTTCTTCCEEECTTCCCSCCCCTTCTTCCEEE--CTTCTTCCCCCCTTCTTCCEEEC---TTCCCSCCCC----------
T ss_pred             HHHCCCCCEEeccCCCCCEEECCCCccCCccc--ccccccCCEEECCCCcccceecc---CCCcceEech----------
Confidence            345666666655543221          1111  23445555555555533222211   1122222222          


Q ss_pred             HHHhcCCCCCEeecCCCCCChhHHHHhHcCCCCCeeeeCCCCCCHHHHHHHhcCCCCCeeeccCCCCCChhHHHHHHhCc
Q 012186          366 AALTSLTGLTHLDLFGARITDSGAAYLRNFKNLRSLEICGGGLTDAGVKHIKDLSSLTLLNLSQNCNLTDKTLELISGLT  445 (469)
Q Consensus       366 ~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~l~~~~~~~l~~l~  445 (469)
                         ..+++|++|++++|++++.   .+..+++|+.|++++|++++        ++.|..|.+++| .+.+.     +.+.
T Consensus       315 ---~~~~~L~~L~L~~N~l~~l---~l~~l~~L~~L~l~~N~l~~--------l~~L~~L~l~~n-~l~g~-----~~~~  374 (457)
T 3bz5_A          315 ---SQNPKLVYLYLNNTELTEL---DVSHNTKLKSLSCVNAHIQD--------FSSVGKIPALNN-NFEAE-----GQTI  374 (457)
T ss_dssp             ---TTCTTCCEEECTTCCCSCC---CCTTCTTCSEEECCSSCCCB--------CTTGGGSSGGGT-SEEEE-----EEEE
T ss_pred             ---hhcccCCEEECCCCccccc---ccccCCcCcEEECCCCCCCC--------ccccccccccCC-cEEec-----ceee
Confidence               2335666666666666663   25566666666666666654        244555555555 33332     2445


Q ss_pred             ccccccccCCCCC
Q 012186          446 GLVSLNVSNSRIT  458 (469)
Q Consensus       446 ~L~~L~l~~~~~~  458 (469)
                      +|+.+++++|+++
T Consensus       375 ~l~~l~l~~N~l~  387 (457)
T 3bz5_A          375 TMPKETLTNNSLT  387 (457)
T ss_dssp             ECCCBCCBTTBEE
T ss_pred             ecCccccccCcEE
Confidence            5666666666654

>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}

Probab=99.96  E-value=1.6e-29  Score=250.38  Aligned_cols=317  Identities=16%  Similarity=0.109  Sum_probs=265.1

Q ss_pred             cCCCCCEEecCCCcccChhHhHhhhCCCCCCEEeCCCCCcCcHHHHHHHhCCCCCCEEecccccccccccccccCCCCcc
Q 012186           79 DCSNLQSLDFNFCIQISDGGLEHLRGLSNLTSLSFRRNNAITAQGMKAFAGLINLVKLDLERCTRIHGGLVNLKGLMKLE  158 (469)
Q Consensus        79 ~~~~L~~L~l~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~  158 (469)
                      .+.+++.++++++ .+....+..+..+++|++|++++|.+ ....+..++.+++|++|++++|......+..+..+++|+
T Consensus        49 ~l~~l~~l~l~~~-~l~~lp~~~~~~l~~L~~L~L~~n~l-~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~  126 (597)
T 3oja_B           49 TLNNQKIVTFKNS-TMRKLPAALLDSFRQVELLNLNDLQI-EEIDTYAFAYAHTIQKLYMGFNAIRYLPPHVFQNVPLLT  126 (597)
T ss_dssp             GGCCCSEEEESSC-EESEECTHHHHHCCCCSEEECTTSCC-CEECTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCC
T ss_pred             cCCCceEEEeeCC-CCCCcCHHHHccCCCCcEEECCCCCC-CCCChHHhcCCCCCCEEECCCCcCCCCCHHHHcCCCCCC
Confidence            5689999999984 67777777789999999999999974 555566899999999999999865555556689999999


Q ss_pred             EEEccCCCCCChhhhhcccCCCCCCEEEecccccChhhhhhccCCCCCCeeeccCCCCchhhHHhhhcCCCCcEEECCCC
Q 012186          159 SLNIKWCNCITDSDMKPLSGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACLDSLSALGSLFYLNLNRC  238 (469)
Q Consensus       159 ~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~  238 (469)
                      +|++++|. +....+..+..+++|++|++++|.+....+..+..+++|++|++++|.+...   .+..+++|+.|++++|
T Consensus       127 ~L~L~~n~-l~~l~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~---~~~~l~~L~~L~l~~n  202 (597)
T 3oja_B          127 VLVLERND-LSSLPRGIFHNTPKLTTLSMSNNNLERIEDDTFQATTSLQNLQLSSNRLTHV---DLSLIPSLFHANVSYN  202 (597)
T ss_dssp             EEECCSSC-CCCCCTTTTTTCTTCCEEECCSSCCCBCCTTTTTTCTTCCEEECTTSCCSBC---CGGGCTTCSEEECCSS
T ss_pred             EEEeeCCC-CCCCCHHHhccCCCCCEEEeeCCcCCCCChhhhhcCCcCcEEECcCCCCCCc---ChhhhhhhhhhhcccC
Confidence            99999954 5555555678999999999999999988888899999999999999988775   3567899999999999


Q ss_pred             CCChhHHHHhhcCCCccEEEccCCCCchHHHHHhhCCCCCCEEecCCCCCChHHHHHhhCCCCCCEEeccCCCCChhhHH
Q 012186          239 QLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNLDSCGIGDEGLVNLTGLCNLKCLELSDTQVGSSGLR  318 (469)
Q Consensus       239 ~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~  318 (469)
                      .+..     +...++|+.|++++|.+.....   ...++|+.|++++|.+.+.  ..+..+++|+.|++++|.+....+.
T Consensus       203 ~l~~-----l~~~~~L~~L~ls~n~l~~~~~---~~~~~L~~L~L~~n~l~~~--~~l~~l~~L~~L~Ls~N~l~~~~~~  272 (597)
T 3oja_B          203 LLST-----LAIPIAVEELDASHNSINVVRG---PVNVELTILKLQHNNLTDT--AWLLNYPGLVEVDLSYNELEKIMYH  272 (597)
T ss_dssp             CCSE-----EECCTTCSEEECCSSCCCEEEC---SCCSCCCEEECCSSCCCCC--GGGGGCTTCSEEECCSSCCCEEESG
T ss_pred             cccc-----ccCCchhheeeccCCccccccc---ccCCCCCEEECCCCCCCCC--hhhccCCCCCEEECCCCccCCCCHH
Confidence            8765     3456789999999998875322   2246899999999988763  5688899999999999999988888


Q ss_pred             HhhCCCCCcEEecccCCCCchHHHhhhCCCCCcEEEccCCCCCHHHHHHHhcCCCCCEeecCCCCCChhHHHHhHcCCCC
Q 012186          319 HLSGLTNLESINLSFTGISDGSLRKLAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLFGARITDSGAAYLRNFKNL  398 (469)
Q Consensus       319 ~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L  398 (469)
                      .++.+++|+.|++++|.+... +..+..+++|+.|++++|.++.. +..+..+++|+.|++++|.+++..   +..+++|
T Consensus       273 ~~~~l~~L~~L~Ls~N~l~~l-~~~~~~l~~L~~L~Ls~N~l~~i-~~~~~~l~~L~~L~L~~N~l~~~~---~~~~~~L  347 (597)
T 3oja_B          273 PFVKMQRLERLYISNNRLVAL-NLYGQPIPTLKVLDLSHNHLLHV-ERNQPQFDRLENLYLDHNSIVTLK---LSTHHTL  347 (597)
T ss_dssp             GGTTCSSCCEEECTTSCCCEE-ECSSSCCTTCCEEECCSSCCCCC-GGGHHHHTTCSEEECCSSCCCCCC---CCTTCCC
T ss_pred             HhcCccCCCEEECCCCCCCCC-CcccccCCCCcEEECCCCCCCcc-CcccccCCCCCEEECCCCCCCCcC---hhhcCCC
Confidence            899999999999999998874 34456789999999999999865 445678899999999999998763   6678999


Q ss_pred             CeeeeCCCCCCHHHHHHH
Q 012186          399 RSLEICGGGLTDAGVKHI  416 (469)
Q Consensus       399 ~~L~l~~~~~~~~~~~~l  416 (469)
                      +.|++++|.+....+..+
T Consensus       348 ~~L~l~~N~~~~~~~~~~  365 (597)
T 3oja_B          348 KNLTLSHNDWDCNSLRAL  365 (597)
T ss_dssp             SEEECCSSCEEHHHHHHH
T ss_pred             CEEEeeCCCCCChhHHHH
Confidence            999999999987654433

>4g8a_A TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, immune system; HET: NAG LP4 LP5 DAO MYR KDO; 2.40A {Homo sapiens} PDB: 3fxi_A*

Probab=99.96  E-value=2.7e-30  Score=259.44  Aligned_cols=393  Identities=19%  Similarity=0.189  Sum_probs=274.5

Q ss_pred             cEEEecCCCCChHhhHhhhcCCCCCEEecCCCcccChhHhHhhhCCCCCCEEeCCCCCcCcHHHHHHHhCCCCCCEEecc
Q 012186           60 LSVDLSGSDVTDSGLIHLKDCSNLQSLDFNFCIQISDGGLEHLRGLSNLTSLSFRRNNAITAQGMKAFAGLINLVKLDLE  139 (469)
Q Consensus        60 ~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~l~  139 (469)
                      +..+.++.+++ .+|..+.  +++++|++++ +.++...+.+|.++++|++|++++|.+ ....+.+|.++++|++|+++
T Consensus        34 ~~~~c~~~~l~-~vP~~lp--~~~~~LdLs~-N~i~~l~~~~f~~l~~L~~L~Ls~N~i-~~i~~~~f~~L~~L~~L~Ls  108 (635)
T 4g8a_A           34 ITYQCMELNFY-KIPDNLP--FSTKNLDLSF-NPLRHLGSYSFFSFPELQVLDLSRCEI-QTIEDGAYQSLSHLSTLILT  108 (635)
T ss_dssp             TEEECTTSCCS-SCCSSSC--TTCCEEECTT-SCCCEECTTTTTTCTTCCEEECTTCCC-CEECTTTTTTCTTCCEEECT
T ss_pred             CEEECCCCCcC-ccCCCCC--cCCCEEEeeC-CCCCCCCHHHHhCCCCCCEEECCCCcC-CCcChhHhcCCCCCCEEEcc
Confidence            34556655565 3454331  4799999999 578888788999999999999999974 45556789999999999999


Q ss_pred             cccccccccccccCCCCccEEEccCCCCCChhhhhcccCCCCCCEEEecccccChh-hhhhccCCCCCCeeeccCCCCch
Q 012186          140 RCTRIHGGLVNLKGLMKLESLNIKWCNCITDSDMKPLSGLTNLKSLQISCSKVTDS-GIAYLKGLQKLTLLNLEGCPVTA  218 (469)
Q Consensus       140 ~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~-~~~~l~~l~~L~~L~l~~~~~~~  218 (469)
                      +|......+..+..+++|++|++++|. +.......++++++|++|++++|.+... .+..+..+++|++|++++|.+..
T Consensus       109 ~N~l~~l~~~~f~~L~~L~~L~Ls~N~-l~~l~~~~~~~L~~L~~L~Ls~N~l~~~~~~~~~~~l~~L~~L~L~~N~l~~  187 (635)
T 4g8a_A          109 GNPIQSLALGAFSGLSSLQKLVAVETN-LASLENFPIGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQS  187 (635)
T ss_dssp             TCCCCEECGGGGTTCTTCCEEECTTSC-CCCSTTCCCTTCTTCCEEECCSSCCCCCCCCGGGGGCTTCCEEECCSSCCCE
T ss_pred             CCcCCCCCHHHhcCCCCCCEEECCCCc-CCCCChhhhhcCcccCeeccccCccccCCCchhhccchhhhhhcccCccccc
Confidence            985433344668999999999999954 5655666789999999999999988764 34667889999999999998877


Q ss_pred             hhHHhhhcCCC----CcEEECCCCCCChh------------------------HHHHhhcCCCccEEEc-----------
Q 012186          219 ACLDSLSALGS----LFYLNLNRCQLSDD------------------------GCEKFSKIGSLKVLNL-----------  259 (469)
Q Consensus       219 ~~~~~~~~~~~----L~~L~l~~~~~~~~------------------------~~~~~~~~~~L~~L~l-----------  259 (469)
                      ..+..+..+.+    ...+++..+.+...                        ....+..++.++...+           
T Consensus       188 ~~~~~l~~L~~l~~~~~~~~ls~n~l~~i~~~~~~~~~~~~l~l~~n~~~~~~~~~~~~~l~~l~~~~l~~~~~~~~~~l  267 (635)
T 4g8a_A          188 IYCTDLRVLHQMPLLNLSLDLSLNPMNFIQPGAFKEIRLHKLTLRNNFDSLNVMKTCIQGLAGLEVHRLVLGEFRNEGNL  267 (635)
T ss_dssp             ECGGGGHHHHTCTTCCCEEECTTCCCCEECTTTTTTCEEEEEEEESCCSSHHHHHHHHHTTTTCEEEEEEEECCTTSCCC
T ss_pred             cccccccchhhhhhhhhhhhcccCcccccCcccccchhhhhhhhhcccccccccchhhcCCccccccccccccccccccc
Confidence            65555443322    22445544433211                        1122233333333222           


Q ss_pred             ----------------------------------------------cCCCCchHHHHHhhCCCCCCEEecCCCCCChHH-
Q 012186          260 ----------------------------------------------GFNEITDECLVHLKGLTNLESLNLDSCGIGDEG-  292 (469)
Q Consensus       260 ----------------------------------------------~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~-  292 (469)
                                                                    .++.+..  ...+.....++.|++.++.+.... 
T Consensus       268 ~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~--~~~~~~~~~L~~L~l~~~~~~~~~~  345 (635)
T 4g8a_A          268 EKFDKSALEGLCNLTIEEFRLAYLDYYLDGIIDLFNCLTNVSSFSLVSVTIER--VKDFSYNFGWQHLELVNCKFGQFPT  345 (635)
T ss_dssp             SCCCTTTTGGGGGSEEEEEEEECCCSCEEECTTTTGGGTTCSEEEEESCEEEE--CGGGGSCCCCSEEEEESCEESSCCC
T ss_pred             ccccccccccccchhhhhhhhhhhcccccchhhhhhhhccccccccccccccc--ccccccchhhhhhhcccccccCcCc
Confidence                                                          1111111  012233456777777665332111 


Q ss_pred             ------------------HHHhhCCCCCCEEeccCCCCChh--hHHHhhCC-----------------------CCCcEE
Q 012186          293 ------------------LVNLTGLCNLKCLELSDTQVGSS--GLRHLSGL-----------------------TNLESI  329 (469)
Q Consensus       293 ------------------~~~~~~~~~L~~L~l~~~~~~~~--~~~~~~~~-----------------------~~L~~L  329 (469)
                                        ......+++|+.++++++.+...  .+.....+                       ++|+.+
T Consensus       346 ~~l~~L~~l~l~~n~~~~~~~~~~l~~L~~L~ls~n~l~~~~~~~~~~~~~~~L~~L~~~~~~~~~~~~~~~~l~~L~~l  425 (635)
T 4g8a_A          346 LKLKSLKRLTFTSNKGGNAFSEVDLPSLEFLDLSRNGLSFKGCCSQSDFGTISLKYLDLSFNGVITMSSNFLGLEQLEHL  425 (635)
T ss_dssp             CBCTTCCEEEEESCCSCCBCCCCBCTTCCEEECCSSCCBEEEECCHHHHSCSCCCEEECCSCSEEEECSCCTTCTTCCEE
T ss_pred             ccchhhhhcccccccCCCCcccccccccccchhhccccccccccccchhhhhhhhhhhccccccccccccccccccccch
Confidence                              01123567899999988865432  12223334                       444444


Q ss_pred             ecccCCCCch-HHHhhhCCCCCcEEEccCCCCCHHHHHHHhcCCCCCEeecCCCCCC-hhHHHHhHcCCCCCeeeeCCCC
Q 012186          330 NLSFTGISDG-SLRKLAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLFGARIT-DSGAAYLRNFKNLRSLEICGGG  407 (469)
Q Consensus       330 ~l~~~~~~~~-~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~-~~~~~~~~~~~~L~~L~l~~~~  407 (469)
                      .+..+..... ....+..+++++.++++.|.+....+..+..++.|+.|++++|... ...|..+..+++|+.|++++|+
T Consensus       426 ~l~~~~~~~~~~~~~~~~l~~l~~l~ls~n~l~~~~~~~~~~~~~L~~L~Ls~N~~~~~~~~~~~~~l~~L~~L~Ls~N~  505 (635)
T 4g8a_A          426 DFQHSNLKQMSEFSVFLSLRNLIYLDISHTHTRVAFNGIFNGLSSLEVLKMAGNSFQENFLPDIFTELRNLTFLDLSQCQ  505 (635)
T ss_dssp             ECTTSEEESTTSSCTTTTCTTCCEEECTTSCCEECCTTTTTTCTTCCEEECTTCEEGGGEECSCCTTCTTCCEEECTTSC
T ss_pred             hhhhccccccccccccccccccccccccccccccccccccccchhhhhhhhhhcccccccCchhhhhccccCEEECCCCc
Confidence            4444322211 1234456778888888888887766677778899999999999744 4456778889999999999999


Q ss_pred             CCHHHHHHHhcCCCCCeeeccCCCCCChhHHHHHHhCcccccccccCCCCCHHH
Q 012186          408 LTDAGVKHIKDLSSLTLLNLSQNCNLTDKTLELISGLTGLVSLNVSNSRITSAG  461 (469)
Q Consensus       408 ~~~~~~~~l~~~~~L~~L~l~~~~~l~~~~~~~l~~l~~L~~L~l~~~~~~~~~  461 (469)
                      +++..|..|.++++|++|++++| .++...+..+.++++|+.|++++|+++...
T Consensus       506 L~~l~~~~f~~l~~L~~L~Ls~N-~l~~l~~~~~~~l~~L~~L~Ls~N~l~~~~  558 (635)
T 4g8a_A          506 LEQLSPTAFNSLSSLQVLNMSHN-NFFSLDTFPYKCLNSLQVLDYSLNHIMTSK  558 (635)
T ss_dssp             CCEECTTTTTTCTTCCEEECTTS-CCCBCCCGGGTTCTTCCEEECTTSCCCBCC
T ss_pred             cCCcChHHHcCCCCCCEEECCCC-cCCCCChhHHhCCCCCCEEECCCCcCCCCC
Confidence            99998889999999999999999 899988888999999999999999987643

>3bz5_A Internalin-J, INLJ; leucine rich repeat (LRR), cysteine ladder, asparagine ladder, virulence factor, solenoid, cell WALL; 2.70A {Listeria monocytogenes}

Probab=99.96  E-value=3.6e-29  Score=238.52  Aligned_cols=329  Identities=19%  Similarity=0.145  Sum_probs=240.4

Q ss_pred             HhhHhhhcCCCCCEEecCCCcccChhHhHhhhCCCCCCEEeCCCCCcCcHHHHHHHhCCCCCCEEecccccccccccccc
Q 012186           72 SGLIHLKDCSNLQSLDFNFCIQISDGGLEHLRGLSNLTSLSFRRNNAITAQGMKAFAGLINLVKLDLERCTRIHGGLVNL  151 (469)
Q Consensus        72 ~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~l  151 (469)
                      ..+..+.++++|++|+++++ .++.. + .+..+++|++|++++|.+..  .+  ++.+++|++|++++|. +...  .+
T Consensus        33 ~~~~~~~~l~~L~~L~Ls~n-~l~~~-~-~l~~l~~L~~L~Ls~n~l~~--~~--~~~l~~L~~L~Ls~N~-l~~~--~~  102 (457)
T 3bz5_A           33 TDTISEEQLATLTSLDCHNS-SITDM-T-GIEKLTGLTKLICTSNNITT--LD--LSQNTNLTYLACDSNK-LTNL--DV  102 (457)
T ss_dssp             TSEEEHHHHTTCCEEECCSS-CCCCC-T-TGGGCTTCSEEECCSSCCSC--CC--CTTCTTCSEEECCSSC-CSCC--CC
T ss_pred             ccccChhHcCCCCEEEccCC-CcccC-h-hhcccCCCCEEEccCCcCCe--Ec--cccCCCCCEEECcCCC-Ccee--ec
Confidence            34456788999999999985 56654 3 68899999999999998533  23  8889999999999975 4333  28


Q ss_pred             cCCCCccEEEccCCCCCChhhhhcccCCCCCCEEEecccccChhhhhhccCCCCCCeeeccCCCCchhhHHhhhcCCCCc
Q 012186          152 KGLMKLESLNIKWCNCITDSDMKPLSGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACLDSLSALGSLF  231 (469)
Q Consensus       152 ~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~L~  231 (469)
                      ..+++|++|+++++. +...   .+..+++|++|++++|.++..   .+..+++|++|++++|......  .+..+++|+
T Consensus       103 ~~l~~L~~L~L~~N~-l~~l---~~~~l~~L~~L~l~~N~l~~l---~l~~l~~L~~L~l~~n~~~~~~--~~~~l~~L~  173 (457)
T 3bz5_A          103 TPLTKLTYLNCDTNK-LTKL---DVSQNPLLTYLNCARNTLTEI---DVSHNTQLTELDCHLNKKITKL--DVTPQTQLT  173 (457)
T ss_dssp             TTCTTCCEEECCSSC-CSCC---CCTTCTTCCEEECTTSCCSCC---CCTTCTTCCEEECTTCSCCCCC--CCTTCTTCC
T ss_pred             CCCCcCCEEECCCCc-CCee---cCCCCCcCCEEECCCCcccee---ccccCCcCCEEECCCCCccccc--ccccCCcCC
Confidence            889999999999864 4433   378899999999999988874   3778899999999998443322  477889999


Q ss_pred             EEECCCCCCChhHHHHhhcCCCccEEEccCCCCchHHHHHhhCCCCCCEEecCCCCCChHHHHHhhCCCCCCEEeccCCC
Q 012186          232 YLNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNLDSCGIGDEGLVNLTGLCNLKCLELSDTQ  311 (469)
Q Consensus       232 ~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~  311 (469)
                      .|++++|.+....   +..+++|+.|++++|.+++.   .+..+++|+.|++++|.+...+   +..+++|+.|++++|.
T Consensus       174 ~L~ls~n~l~~l~---l~~l~~L~~L~l~~N~l~~~---~l~~l~~L~~L~Ls~N~l~~ip---~~~l~~L~~L~l~~N~  244 (457)
T 3bz5_A          174 TLDCSFNKITELD---VSQNKLLNRLNCDTNNITKL---DLNQNIQLTFLDCSSNKLTEID---VTPLTQLTYFDCSVNP  244 (457)
T ss_dssp             EEECCSSCCCCCC---CTTCTTCCEEECCSSCCSCC---CCTTCTTCSEEECCSSCCSCCC---CTTCTTCSEEECCSSC
T ss_pred             EEECCCCccceec---cccCCCCCEEECcCCcCCee---ccccCCCCCEEECcCCcccccC---ccccCCCCEEEeeCCc
Confidence            9999999887742   67889999999999988864   3778889999999999887632   7788899999999998


Q ss_pred             CChhhHHHhhCCCCCcEEecccCCCCchHHHhhhCCCCCcEEEccCCCCCHHHHHHHhcCCCCCEeecCCCCCChhHHH-
Q 012186          312 VGSSGLRHLSGLTNLESINLSFTGISDGSLRKLAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLFGARITDSGAA-  390 (469)
Q Consensus       312 ~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~-  390 (469)
                      +....   ++.+++|+.|.++.+              +|+.|++++|.+.+..+  ...+++|+.|++++|...+.+|. 
T Consensus       245 l~~~~---~~~l~~L~~L~l~~n--------------~L~~L~l~~n~~~~~~~--~~~l~~L~~L~Ls~n~~l~~l~~~  305 (457)
T 3bz5_A          245 LTELD---VSTLSKLTTLHCIQT--------------DLLEIDLTHNTQLIYFQ--AEGCRKIKELDVTHNTQLYLLDCQ  305 (457)
T ss_dssp             CSCCC---CTTCTTCCEEECTTC--------------CCSCCCCTTCTTCCEEE--CTTCTTCCCCCCTTCTTCCEEECT
T ss_pred             CCCcC---HHHCCCCCEEeccCC--------------CCCEEECCCCccCCccc--ccccccCCEEECCCCcccceeccC
Confidence            87653   456677777766554              23344444443332211  23445555555555543332221 


Q ss_pred             -------HhHcCCCCCeeeeCCCCCCHHHHHHHhcCCCCCeeeccCCCCCChhHHHHHHhCcccccccccCCCCCH
Q 012186          391 -------YLRNFKNLRSLEICGGGLTDAGVKHIKDLSSLTLLNLSQNCNLTDKTLELISGLTGLVSLNVSNSRITS  459 (469)
Q Consensus       391 -------~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~l~~~~~~~l~~l~~L~~L~l~~~~~~~  459 (469)
                             .+..+++|+.|++++|++++.   .+..+++|+.|++++| .+.+        +++|+.|++++|.+..
T Consensus       306 ~~~L~~L~l~~~~~L~~L~L~~N~l~~l---~l~~l~~L~~L~l~~N-~l~~--------l~~L~~L~l~~n~l~g  369 (457)
T 3bz5_A          306 AAGITELDLSQNPKLVYLYLNNTELTEL---DVSHNTKLKSLSCVNA-HIQD--------FSSVGKIPALNNNFEA  369 (457)
T ss_dssp             TCCCSCCCCTTCTTCCEEECTTCCCSCC---CCTTCTTCSEEECCSS-CCCB--------CTTGGGSSGGGTSEEE
T ss_pred             CCcceEechhhcccCCEEECCCCccccc---ccccCCcCcEEECCCC-CCCC--------ccccccccccCCcEEe
Confidence                   123347888899999988885   3778889999999998 6665        4677788888877653

>1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein; HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A* 1xcd_A*

Probab=99.95  E-value=2.6e-28  Score=223.97  Aligned_cols=269  Identities=19%  Similarity=0.199  Sum_probs=161.0

Q ss_pred             CCCCEEEecccccChhhhhhccCCCCCCeeeccCCCCchhhHHhhhcCCCCcEEECCCCCCChhHHHHhhcCCCccEEEc
Q 012186          180 TNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACLDSLSALGSLFYLNLNRCQLSDDGCEKFSKIGSLKVLNL  259 (469)
Q Consensus       180 ~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l  259 (469)
                      ++++.|+++++.++......+..+++|++|++++|.+....+..+..+++|++|++++|.+.... ..+  .++|+.|++
T Consensus        52 ~~l~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~l~-~~~--~~~L~~L~l  128 (330)
T 1xku_A           52 PDTALLDLQNNKITEIKDGDFKNLKNLHTLILINNKISKISPGAFAPLVKLERLYLSKNQLKELP-EKM--PKTLQELRV  128 (330)
T ss_dssp             TTCCEEECCSSCCCCBCTTTTTTCTTCCEEECCSSCCCCBCTTTTTTCTTCCEEECCSSCCSBCC-SSC--CTTCCEEEC
T ss_pred             CCCeEEECCCCcCCEeChhhhccCCCCCEEECCCCcCCeeCHHHhcCCCCCCEEECCCCcCCccC-hhh--cccccEEEC
Confidence            34555555555555444444555555555555555554444445555555555555555544321 111  245666666


Q ss_pred             cCCCCchHHHHHhhCCCCCCEEecCCCCCCh--HHHHHhhCCCCCCEEeccCCCCChhhHHHhhCCCCCcEEecccCCCC
Q 012186          260 GFNEITDECLVHLKGLTNLESLNLDSCGIGD--EGLVNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSFTGIS  337 (469)
Q Consensus       260 ~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~--~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~  337 (469)
                      ++|.+....+..+..+++|+.|++++|.+..  ..+..+..+++|+.|++++|.+.....   ...++|+.|++++|.+.
T Consensus       129 ~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~l~~L~~L~l~~n~l~~l~~---~~~~~L~~L~l~~n~l~  205 (330)
T 1xku_A          129 HENEITKVRKSVFNGLNQMIVVELGTNPLKSSGIENGAFQGMKKLSYIRIADTNITTIPQ---GLPPSLTELHLDGNKIT  205 (330)
T ss_dssp             CSSCCCBBCHHHHTTCTTCCEEECCSSCCCGGGBCTTGGGGCTTCCEEECCSSCCCSCCS---SCCTTCSEEECTTSCCC
T ss_pred             CCCcccccCHhHhcCCccccEEECCCCcCCccCcChhhccCCCCcCEEECCCCccccCCc---cccccCCEEECCCCcCC
Confidence            6666555545555566666666666665532  223345556666666666665554221   12267777777777777


Q ss_pred             chHHHhhhCCCCCcEEEccCCCCCHHHHHHHhcCCCCCEeecCCCCCChhHHHHhHcCCCCCeeeeCCCCCCHHHHHHHh
Q 012186          338 DGSLRKLAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLFGARITDSGAAYLRNFKNLRSLEICGGGLTDAGVKHIK  417 (469)
Q Consensus       338 ~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~  417 (469)
                      ...+..+..+++|+.|++++|.++...+..+..+++|++|++++|+++. +|.++..+++|+.|++++|.+++..+..|.
T Consensus       206 ~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~-lp~~l~~l~~L~~L~l~~N~i~~~~~~~f~  284 (330)
T 1xku_A          206 KVDAASLKGLNNLAKLGLSFNSISAVDNGSLANTPHLRELHLNNNKLVK-VPGGLADHKYIQVVYLHNNNISAIGSNDFC  284 (330)
T ss_dssp             EECTGGGTTCTTCCEEECCSSCCCEECTTTGGGSTTCCEEECCSSCCSS-CCTTTTTCSSCCEEECCSSCCCCCCTTSSS
T ss_pred             ccCHHHhcCCCCCCEEECCCCcCceeChhhccCCCCCCEEECCCCcCcc-CChhhccCCCcCEEECCCCcCCccChhhcC
Confidence            6666667777777777777777776655566777778888888777774 455667777888888888877776555543


Q ss_pred             c------CCCCCeeeccCCCCCCh--hHHHHHHhCcccccccccCCC
Q 012186          418 D------LSSLTLLNLSQNCNLTD--KTLELISGLTGLVSLNVSNSR  456 (469)
Q Consensus       418 ~------~~~L~~L~l~~~~~l~~--~~~~~l~~l~~L~~L~l~~~~  456 (469)
                      .      .+.++.|++++|+ +..  ..+..+..+++++.+++++|+
T Consensus       285 ~~~~~~~~~~l~~l~l~~N~-~~~~~i~~~~f~~~~~l~~l~L~~N~  330 (330)
T 1xku_A          285 PPGYNTKKASYSGVSLFSNP-VQYWEIQPSTFRCVYVRAAVQLGNYK  330 (330)
T ss_dssp             CSSCCTTSCCCSEEECCSSS-SCGGGSCGGGGTTCCCGGGEEC----
T ss_pred             CcccccccccccceEeecCc-ccccccCccccccccceeEEEecccC
Confidence            2      3678888888884 332  344567778888888888774

>1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A

Probab=99.95  E-value=3.2e-29  Score=238.69  Aligned_cols=303  Identities=18%  Similarity=0.115  Sum_probs=175.6

Q ss_pred             CCCCEEeCCCCCcCcHHHHHHHhCCCCCCEEecccccccccccccccCC-CCccEEEccCCCCCChhhhhcccCCCCCCE
Q 012186          106 SNLTSLSFRRNNAITAQGMKAFAGLINLVKLDLERCTRIHGGLVNLKGL-MKLESLNIKWCNCITDSDMKPLSGLTNLKS  184 (469)
Q Consensus       106 ~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~l~~l-~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~  184 (469)
                      ++|++|++++|.+..  .|.   .+++|++|++++|. +...    ... ++|++|++++|. +.. .+ .++.+++|++
T Consensus        91 ~~L~~L~l~~n~l~~--lp~---~~~~L~~L~l~~n~-l~~l----~~~~~~L~~L~L~~n~-l~~-lp-~~~~l~~L~~  157 (454)
T 1jl5_A           91 PHLESLVASCNSLTE--LPE---LPQSLKSLLVDNNN-LKAL----SDLPPLLEYLGVSNNQ-LEK-LP-ELQNSSFLKI  157 (454)
T ss_dssp             TTCSEEECCSSCCSS--CCC---CCTTCCEEECCSSC-CSCC----CSCCTTCCEEECCSSC-CSS-CC-CCTTCTTCCE
T ss_pred             CCCCEEEccCCcCCc--ccc---ccCCCcEEECCCCc-cCcc----cCCCCCCCEEECcCCC-CCC-Cc-ccCCCCCCCE
Confidence            455666665554321  221   23556666666542 2221    112 567777776643 332 22 4666777777


Q ss_pred             EEecccccChhhhhhccCCCCCCeeeccCCCCchhhHHhhhcCCCCcEEECCCCCCChhHHHHhhcCCCccEEEccCCCC
Q 012186          185 LQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACLDSLSALGSLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEI  264 (469)
Q Consensus       185 L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~  264 (469)
                      |++++|.++..+ .   ..++|++|++++|.+... + .+..+++|+.|++++|.+....    ...++|+.|++++|.+
T Consensus       158 L~l~~N~l~~lp-~---~~~~L~~L~L~~n~l~~l-~-~~~~l~~L~~L~l~~N~l~~l~----~~~~~L~~L~l~~n~l  227 (454)
T 1jl5_A          158 IDVDNNSLKKLP-D---LPPSLEFIAAGNNQLEEL-P-ELQNLPFLTAIYADNNSLKKLP----DLPLSLESIVAGNNIL  227 (454)
T ss_dssp             EECCSSCCSCCC-C---CCTTCCEEECCSSCCSSC-C-CCTTCTTCCEEECCSSCCSSCC----CCCTTCCEEECCSSCC
T ss_pred             EECCCCcCcccC-C---CcccccEEECcCCcCCcC-c-cccCCCCCCEEECCCCcCCcCC----CCcCcccEEECcCCcC
Confidence            777777665421 1   224677777777766653 2 4666777777777777665411    1234677777777776


Q ss_pred             chHHHHHhhCCCCCCEEecCCCCCChHHHHHhhCCCCCCEEeccCCCCChhhHHHhhCCCCCcEEecccCCCCchHHHhh
Q 012186          265 TDECLVHLKGLTNLESLNLDSCGIGDEGLVNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISDGSLRKL  344 (469)
Q Consensus       265 ~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~  344 (469)
                      .. .+ .+..+++|+.|++++|.+....    ..+++|+.|++++|.+....    ..+++|+.|++++|.+.+..  .+
T Consensus       228 ~~-lp-~~~~l~~L~~L~l~~N~l~~l~----~~~~~L~~L~l~~N~l~~l~----~~~~~L~~L~ls~N~l~~l~--~~  295 (454)
T 1jl5_A          228 EE-LP-ELQNLPFLTTIYADNNLLKTLP----DLPPSLEALNVRDNYLTDLP----ELPQSLTFLDVSENIFSGLS--EL  295 (454)
T ss_dssp             SS-CC-CCTTCTTCCEEECCSSCCSSCC----SCCTTCCEEECCSSCCSCCC----CCCTTCCEEECCSSCCSEES--CC
T ss_pred             Cc-cc-ccCCCCCCCEEECCCCcCCccc----ccccccCEEECCCCcccccC----cccCcCCEEECcCCccCccc--Cc
Confidence            63 23 3667777777777777665421    12467777777777665421    13467888888877766521  11


Q ss_pred             hCCCCCcEEEccCCCCCHHHHHHHhcC-CCCCEeecCCCCCChhHHHHhHcCCCCCeeeeCCCCCCHHHHHHHhcCCCCC
Q 012186          345 AGLSSLKSLNLDARQITDTGLAALTSL-TGLTHLDLFGARITDSGAAYLRNFKNLRSLEICGGGLTDAGVKHIKDLSSLT  423 (469)
Q Consensus       345 ~~~~~L~~L~l~~~~~~~~~~~~l~~~-~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~  423 (469)
                        .++|+.|++++|.++..     ..+ ++|++|++++|++++. |.   .+++|+.|++++|.++.. |.   .+++|+
T Consensus       296 --~~~L~~L~l~~N~l~~i-----~~~~~~L~~L~Ls~N~l~~l-p~---~~~~L~~L~L~~N~l~~l-p~---~l~~L~  360 (454)
T 1jl5_A          296 --PPNLYYLNASSNEIRSL-----CDLPPSLEELNVSNNKLIEL-PA---LPPRLERLIASFNHLAEV-PE---LPQNLK  360 (454)
T ss_dssp             --CTTCCEEECCSSCCSEE-----CCCCTTCCEEECCSSCCSCC-CC---CCTTCCEEECCSSCCSCC-CC---CCTTCC
T ss_pred             --CCcCCEEECcCCcCCcc-----cCCcCcCCEEECCCCccccc-cc---cCCcCCEEECCCCccccc-cc---hhhhcc
Confidence              25788888888877752     234 4888888888888763 32   258889999998888864 33   478899


Q ss_pred             eeeccCCCCCCh--hHHHHHHhC-------------cccccccccCCCCCH
Q 012186          424 LLNLSQNCNLTD--KTLELISGL-------------TGLVSLNVSNSRITS  459 (469)
Q Consensus       424 ~L~l~~~~~l~~--~~~~~l~~l-------------~~L~~L~l~~~~~~~  459 (469)
                      +|++++| .+.+  ..|..+..+             ++|+.|++++|+++.
T Consensus       361 ~L~L~~N-~l~~l~~ip~~l~~L~~n~~~~~i~~~~~~L~~L~ls~N~l~~  410 (454)
T 1jl5_A          361 QLHVEYN-PLREFPDIPESVEDLRMNSHLAEVPELPQNLKQLHVETNPLRE  410 (454)
T ss_dssp             EEECCSS-CCSSCCCCCTTCCEEECCC------------------------
T ss_pred             EEECCCC-CCCcCCCChHHHHhhhhcccccccccccCcCCEEECCCCcCCc
Confidence            9999998 6666  445555555             788999999988875

>1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein; HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A* 1xcd_A*

Probab=99.95  E-value=2e-27  Score=218.11  Aligned_cols=290  Identities=16%  Similarity=0.154  Sum_probs=154.7

Q ss_pred             CCCEEeCCCCCcCcHHHHHHHhCCCCCCEEecccccccccccccccCCCCccEEEccCCCCCChhhhhcccCCCCCCEEE
Q 012186          107 NLTSLSFRRNNAITAQGMKAFAGLINLVKLDLERCTRIHGGLVNLKGLMKLESLNIKWCNCITDSDMKPLSGLTNLKSLQ  186 (469)
Q Consensus       107 ~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~  186 (469)
                      ++++++++++...  ..|..+  .+++++|++++|......+..+.++++|++|+++++. +....+..+..+++|++|+
T Consensus        32 ~l~~l~~~~~~l~--~lp~~~--~~~l~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~-l~~~~~~~~~~l~~L~~L~  106 (330)
T 1xku_A           32 HLRVVQCSDLGLE--KVPKDL--PPDTALLDLQNNKITEIKDGDFKNLKNLHTLILINNK-ISKISPGAFAPLVKLERLY  106 (330)
T ss_dssp             ETTEEECTTSCCC--SCCCSC--CTTCCEEECCSSCCCCBCTTTTTTCTTCCEEECCSSC-CCCBCTTTTTTCTTCCEEE
T ss_pred             CCeEEEecCCCcc--ccCccC--CCCCeEEECCCCcCCEeChhhhccCCCCCEEECCCCc-CCeeCHHHhcCCCCCCEEE
Confidence            5666666655431  122211  2456666666653222222345555566666665532 3333344555555555555


Q ss_pred             ecccccChhhhhhccCCCCCCeeeccCCCCchhhHHhhhcCCCCcEEECCCCCCChhHHHHhhcCCCccEEEccCCCCch
Q 012186          187 ISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACLDSLSALGSLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITD  266 (469)
Q Consensus       187 l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~  266 (469)
                      +++|.++..+...   .++|++|++++|.+....+..+..+++|+.|++++|.+...                      +
T Consensus       107 Ls~n~l~~l~~~~---~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~----------------------~  161 (330)
T 1xku_A          107 LSKNQLKELPEKM---PKTLQELRVHENEITKVRKSVFNGLNQMIVVELGTNPLKSS----------------------G  161 (330)
T ss_dssp             CCSSCCSBCCSSC---CTTCCEEECCSSCCCBBCHHHHTTCTTCCEEECCSSCCCGG----------------------G
T ss_pred             CCCCcCCccChhh---cccccEEECCCCcccccCHhHhcCCccccEEECCCCcCCcc----------------------C
Confidence            5555554322111   14455555555555444444444555555555555444321                      0


Q ss_pred             HHHHHhhCCCCCCEEecCCCCCChHHHHHhhCCCCCCEEeccCCCCChhhHHHhhCCCCCcEEecccCCCCchHHHhhhC
Q 012186          267 ECLVHLKGLTNLESLNLDSCGIGDEGLVNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISDGSLRKLAG  346 (469)
Q Consensus       267 ~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~  346 (469)
                      ..+..+..+++|+.|++++|.+..... .  ..++|++|++++|.+....+..+..+++|+.|++++|.+....+..+..
T Consensus       162 ~~~~~~~~l~~L~~L~l~~n~l~~l~~-~--~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~  238 (330)
T 1xku_A          162 IENGAFQGMKKLSYIRIADTNITTIPQ-G--LPPSLTELHLDGNKITKVDAASLKGLNNLAKLGLSFNSISAVDNGSLAN  238 (330)
T ss_dssp             BCTTGGGGCTTCCEEECCSSCCCSCCS-S--CCTTCSEEECTTSCCCEECTGGGTTCTTCCEEECCSSCCCEECTTTGGG
T ss_pred             cChhhccCCCCcCEEECCCCccccCCc-c--ccccCCEEECCCCcCCccCHHHhcCCCCCCEEECCCCcCceeChhhccC
Confidence            122334445555555555554432111 1  1245666666666655555555666666666666666666555555666


Q ss_pred             CCCCcEEEccCCCCCHHHHHHHhcCCCCCEeecCCCCCChhHHHHhHc------CCCCCeeeeCCCCCCH--HHHHHHhc
Q 012186          347 LSSLKSLNLDARQITDTGLAALTSLTGLTHLDLFGARITDSGAAYLRN------FKNLRSLEICGGGLTD--AGVKHIKD  418 (469)
Q Consensus       347 ~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~------~~~L~~L~l~~~~~~~--~~~~~l~~  418 (469)
                      +++|+.|++++|.++.. +..+..+++|++|++++|++++..+..+..      .+.++.|++++|.+..  ..|..+..
T Consensus       239 l~~L~~L~L~~N~l~~l-p~~l~~l~~L~~L~l~~N~i~~~~~~~f~~~~~~~~~~~l~~l~l~~N~~~~~~i~~~~f~~  317 (330)
T 1xku_A          239 TPHLRELHLNNNKLVKV-PGGLADHKYIQVVYLHNNNISAIGSNDFCPPGYNTKKASYSGVSLFSNPVQYWEIQPSTFRC  317 (330)
T ss_dssp             STTCCEEECCSSCCSSC-CTTTTTCSSCCEEECCSSCCCCCCTTSSSCSSCCTTSCCCSEEECCSSSSCGGGSCGGGGTT
T ss_pred             CCCCCEEECCCCcCccC-ChhhccCCCcCEEECCCCcCCccChhhcCCcccccccccccceEeecCcccccccCcccccc
Confidence            66777777777666643 334556677777777777776655544422      3677788888887754  44556777


Q ss_pred             CCCCCeeeccCC
Q 012186          419 LSSLTLLNLSQN  430 (469)
Q Consensus       419 ~~~L~~L~l~~~  430 (469)
                      +.+++.+++++|
T Consensus       318 ~~~l~~l~L~~N  329 (330)
T 1xku_A          318 VYVRAAVQLGNY  329 (330)
T ss_dssp             CCCGGGEEC---
T ss_pred             ccceeEEEeccc
Confidence            788888888877

>2ft3_A Biglycan; proteoglycan, dimer interface, structural protein, signaling; HET: NAG FLC; 3.40A {Bos taurus}

Probab=99.94  E-value=2.4e-28  Score=224.34  Aligned_cols=288  Identities=18%  Similarity=0.199  Sum_probs=152.0

Q ss_pred             CCCEEecccccccccccccccCCCCccEEEccCCCCCChhhhhcccCCCCCCEEEecccccChhhhhhccCCCCCCeeec
Q 012186          132 NLVKLDLERCTRIHGGLVNLKGLMKLESLNIKWCNCITDSDMKPLSGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNL  211 (469)
Q Consensus       132 ~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l  211 (469)
                      +++.++++++. +...+..+  .++|++|+++++. +....+..+..+++|++|++++|.++...+..+..+++|++|++
T Consensus        34 ~l~~l~~~~~~-l~~ip~~~--~~~l~~L~l~~n~-i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L  109 (332)
T 2ft3_A           34 HLRVVQCSDLG-LKAVPKEI--SPDTTLLDLQNND-ISELRKDDFKGLQHLYALVLVNNKISKIHEKAFSPLRKLQKLYI  109 (332)
T ss_dssp             ETTEEECCSSC-CSSCCSCC--CTTCCEEECCSSC-CCEECTTTTTTCTTCCEEECCSSCCCEECGGGSTTCTTCCEEEC
T ss_pred             cCCEEECCCCC-ccccCCCC--CCCCeEEECCCCc-CCccCHhHhhCCCCCcEEECCCCccCccCHhHhhCcCCCCEEEC
Confidence            45666665542 22222222  2455555555532 33333344555555555555555555444444555555555555


Q ss_pred             cCCCCchhhHHhhhcCCCCcEEECCCCCCChhHHHHhhcCCCccEEEccCCCCchHHHHHhhCCCCCCEEecCCCCCCh-
Q 012186          212 EGCPVTAACLDSLSALGSLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNLDSCGIGD-  290 (469)
Q Consensus       212 ~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~-  290 (469)
                      ++|.+... +..+.  ++|++|++++|.+....+..                        +..+++|+.|++++|.+.. 
T Consensus       110 ~~n~l~~l-~~~~~--~~L~~L~l~~n~i~~~~~~~------------------------~~~l~~L~~L~l~~n~l~~~  162 (332)
T 2ft3_A          110 SKNHLVEI-PPNLP--SSLVELRIHDNRIRKVPKGV------------------------FSGLRNMNCIEMGGNPLENS  162 (332)
T ss_dssp             CSSCCCSC-CSSCC--TTCCEEECCSSCCCCCCSGG------------------------GSSCSSCCEEECCSCCCBGG
T ss_pred             CCCcCCcc-Ccccc--ccCCEEECCCCccCccCHhH------------------------hCCCccCCEEECCCCccccC
Confidence            55544432 11111  44455555444444333333                        4444455555555444432 


Q ss_pred             -HHHHHhhCCCCCCEEeccCCCCChhhHHHhhCCCCCcEEecccCCCCchHHHhhhCCCCCcEEEccCCCCCHHHHHHHh
Q 012186          291 -EGLVNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISDGSLRKLAGLSSLKSLNLDARQITDTGLAALT  369 (469)
Q Consensus       291 -~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~  369 (469)
                       ..+..+..+ +|+.|++++|.+.....   ...++|+.|++++|.+....+..+..+++|+.|++++|.++...+..+.
T Consensus       163 ~~~~~~~~~l-~L~~L~l~~n~l~~l~~---~~~~~L~~L~l~~n~i~~~~~~~l~~l~~L~~L~L~~N~l~~~~~~~~~  238 (332)
T 2ft3_A          163 GFEPGAFDGL-KLNYLRISEAKLTGIPK---DLPETLNELHLDHNKIQAIELEDLLRYSKLYRLGLGHNQIRMIENGSLS  238 (332)
T ss_dssp             GSCTTSSCSC-CCSCCBCCSSBCSSCCS---SSCSSCSCCBCCSSCCCCCCTTSSTTCTTCSCCBCCSSCCCCCCTTGGG
T ss_pred             CCCcccccCC-ccCEEECcCCCCCccCc---cccCCCCEEECCCCcCCccCHHHhcCCCCCCEEECCCCcCCcCChhHhh
Confidence             112223333 55555555554443211   1125666666666666655555566666777777777666665555566


Q ss_pred             cCCCCCEeecCCCCCChhHHHHhHcCCCCCeeeeCCCCCCHHHHHHHhc------CCCCCeeeccCCCCCC--hhHHHHH
Q 012186          370 SLTGLTHLDLFGARITDSGAAYLRNFKNLRSLEICGGGLTDAGVKHIKD------LSSLTLLNLSQNCNLT--DKTLELI  441 (469)
Q Consensus       370 ~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~------~~~L~~L~l~~~~~l~--~~~~~~l  441 (469)
                      .+++|++|++++|+++. +|..+..+++|+.|++++|.++...+..+..      .+.|+.|++++|+ +.  ...+..+
T Consensus       239 ~l~~L~~L~L~~N~l~~-lp~~l~~l~~L~~L~l~~N~l~~~~~~~~~~~~~~~~~~~l~~L~l~~N~-~~~~~~~~~~~  316 (332)
T 2ft3_A          239 FLPTLRELHLDNNKLSR-VPAGLPDLKLLQVVYLHTNNITKVGVNDFCPVGFGVKRAYYNGISLFNNP-VPYWEVQPATF  316 (332)
T ss_dssp             GCTTCCEEECCSSCCCB-CCTTGGGCTTCCEEECCSSCCCBCCTTSSSCSSCCSSSCCBSEEECCSSS-SCGGGSCGGGG
T ss_pred             CCCCCCEEECCCCcCee-cChhhhcCccCCEEECCCCCCCccChhHccccccccccccccceEeecCc-ccccccCcccc
Confidence            67777777777776664 3455666777777777777777665544433      3567778888874 43  3445566


Q ss_pred             HhCcccccccccCCC
Q 012186          442 SGLTGLVSLNVSNSR  456 (469)
Q Consensus       442 ~~l~~L~~L~l~~~~  456 (469)
                      ..+++|+.+++++|+
T Consensus       317 ~~l~~L~~l~l~~n~  331 (332)
T 2ft3_A          317 RCVTDRLAIQFGNYK  331 (332)
T ss_dssp             TTBCCSTTEEC----
T ss_pred             cccchhhhhhccccc
Confidence            677788888877764

>2ft3_A Biglycan; proteoglycan, dimer interface, structural protein, signaling; HET: NAG FLC; 3.40A {Bos taurus}

Probab=99.94  E-value=1.5e-27  Score=218.94  Aligned_cols=287  Identities=19%  Similarity=0.166  Sum_probs=184.4

Q ss_pred             CCCEEeCCCCCcCcHHHHHHHhCCCCCCEEecccccccccccccccCCCCccEEEccCCCCCChhhhhcccCCCCCCEEE
Q 012186          107 NLTSLSFRRNNAITAQGMKAFAGLINLVKLDLERCTRIHGGLVNLKGLMKLESLNIKWCNCITDSDMKPLSGLTNLKSLQ  186 (469)
Q Consensus       107 ~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~  186 (469)
                      ++++++++++..  ...|..+  .++|++|++++|......+..+.++++|++|++++| .+....+..+..+++|++|+
T Consensus        34 ~l~~l~~~~~~l--~~ip~~~--~~~l~~L~l~~n~i~~~~~~~~~~l~~L~~L~L~~n-~l~~~~~~~~~~l~~L~~L~  108 (332)
T 2ft3_A           34 HLRVVQCSDLGL--KAVPKEI--SPDTTLLDLQNNDISELRKDDFKGLQHLYALVLVNN-KISKIHEKAFSPLRKLQKLY  108 (332)
T ss_dssp             ETTEEECCSSCC--SSCCSCC--CTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSS-CCCEECGGGSTTCTTCCEEE
T ss_pred             cCCEEECCCCCc--cccCCCC--CCCCeEEECCCCcCCccCHhHhhCCCCCcEEECCCC-ccCccCHhHhhCcCCCCEEE
Confidence            689999998875  2334333  369999999998644444567999999999999995 46666678899999999999


Q ss_pred             ecccccChhhhhhccCCCCCCeeeccCCCCchhhHHhhhcCCCCcEEECCCCCCCh--hHHHHhhcCCCccEEEccCCCC
Q 012186          187 ISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACLDSLSALGSLFYLNLNRCQLSD--DGCEKFSKIGSLKVLNLGFNEI  264 (469)
Q Consensus       187 l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~--~~~~~~~~~~~L~~L~l~~~~~  264 (469)
                      +++|.++..+....   ++|++|++++|.+....+..+..+++|+.|++.+|.+..  ..+..+..+ +|+.|++++|.+
T Consensus       109 L~~n~l~~l~~~~~---~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~l-~L~~L~l~~n~l  184 (332)
T 2ft3_A          109 ISKNHLVEIPPNLP---SSLVELRIHDNRIRKVPKGVFSGLRNMNCIEMGGNPLENSGFEPGAFDGL-KLNYLRISEAKL  184 (332)
T ss_dssp             CCSSCCCSCCSSCC---TTCCEEECCSSCCCCCCSGGGSSCSSCCEEECCSCCCBGGGSCTTSSCSC-CCSCCBCCSSBC
T ss_pred             CCCCcCCccCcccc---ccCCEEECCCCccCccCHhHhCCCccCCEEECCCCccccCCCCcccccCC-ccCEEECcCCCC
Confidence            99998885443322   799999999999988766778999999999999998864  233444455 777777777766


Q ss_pred             chHHHHHhhCCCCCCEEecCCCCCChHHHHHhhCCCCCCEEeccCCCCChhhHHHhhCCCCCcEEecccCCCCchHHHhh
Q 012186          265 TDECLVHLKGLTNLESLNLDSCGIGDEGLVNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISDGSLRKL  344 (469)
Q Consensus       265 ~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~  344 (469)
                      +.. +..+  .++|+.|++++|.+....+..+..+++|+.|++++|.+....+..+..+                     
T Consensus       185 ~~l-~~~~--~~~L~~L~l~~n~i~~~~~~~l~~l~~L~~L~L~~N~l~~~~~~~~~~l---------------------  240 (332)
T 2ft3_A          185 TGI-PKDL--PETLNELHLDHNKIQAIELEDLLRYSKLYRLGLGHNQIRMIENGSLSFL---------------------  240 (332)
T ss_dssp             SSC-CSSS--CSSCSCCBCCSSCCCCCCTTSSTTCTTCSCCBCCSSCCCCCCTTGGGGC---------------------
T ss_pred             Ccc-Cccc--cCCCCEEECCCCcCCccCHHHhcCCCCCCEEECCCCcCCcCChhHhhCC---------------------
Confidence            542 1111  1456666666665554433344455555555555554444333334444                     


Q ss_pred             hCCCCCcEEEccCCCCCHHHHHHHhcCCCCCEeecCCCCCChhHHHHhHc------CCCCCeeeeCCCCCC--HHHHHHH
Q 012186          345 AGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLFGARITDSGAAYLRN------FKNLRSLEICGGGLT--DAGVKHI  416 (469)
Q Consensus       345 ~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~------~~~L~~L~l~~~~~~--~~~~~~l  416 (469)
                         ++|+.|++++|.++.. +..+..+++|++|++++|++++..+..+..      .+.|+.|++++|.+.  +..+..+
T Consensus       241 ---~~L~~L~L~~N~l~~l-p~~l~~l~~L~~L~l~~N~l~~~~~~~~~~~~~~~~~~~l~~L~l~~N~~~~~~~~~~~~  316 (332)
T 2ft3_A          241 ---PTLRELHLDNNKLSRV-PAGLPDLKLLQVVYLHTNNITKVGVNDFCPVGFGVKRAYYNGISLFNNPVPYWEVQPATF  316 (332)
T ss_dssp             ---TTCCEEECCSSCCCBC-CTTGGGCTTCCEEECCSSCCCBCCTTSSSCSSCCSSSCCBSEEECCSSSSCGGGSCGGGG
T ss_pred             ---CCCCEEECCCCcCeec-ChhhhcCccCCEEECCCCCCCccChhHccccccccccccccceEeecCcccccccCcccc
Confidence               4555555554444432 223445555555555555555443333322      345666666666665  4445556


Q ss_pred             hcCCCCCeeeccCC
Q 012186          417 KDLSSLTLLNLSQN  430 (469)
Q Consensus       417 ~~~~~L~~L~l~~~  430 (469)
                      ..+++|+.+++++|
T Consensus       317 ~~l~~L~~l~l~~n  330 (332)
T 2ft3_A          317 RCVTDRLAIQFGNY  330 (332)
T ss_dssp             TTBCCSTTEEC---
T ss_pred             cccchhhhhhcccc
Confidence            66777777777766

>1ogq_A PGIP-2, polygalacturonase inhibiting protein; inhibitor; HET: NAG; 1.7A {Phaseolus vulgaris} SCOP: c.10.2.8

Probab=99.94  E-value=3.3e-29  Score=227.44  Aligned_cols=248  Identities=17%  Similarity=0.190  Sum_probs=152.4

Q ss_pred             CCCCEEEecccccCh--hhhhhccCCCCCCeeeccC-CCCchhhHHhhhcCCCCcEEECCCCCCChhHHHHhhcCCCccE
Q 012186          180 TNLKSLQISCSKVTD--SGIAYLKGLQKLTLLNLEG-CPVTAACLDSLSALGSLFYLNLNRCQLSDDGCEKFSKIGSLKV  256 (469)
Q Consensus       180 ~~L~~L~l~~~~~~~--~~~~~l~~l~~L~~L~l~~-~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~  256 (469)
                      .+++.|+++++.+.+  ..+..+..+++|++|++++ +.+....+..+..+++|++|++++|.+....+..+..+++|++
T Consensus        50 ~~l~~L~L~~~~l~~~~~~~~~l~~l~~L~~L~L~~~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~  129 (313)
T 1ogq_A           50 YRVNNLDLSGLNLPKPYPIPSSLANLPYLNFLYIGGINNLVGPIPPAIAKLTQLHYLYITHTNVSGAIPDFLSQIKTLVT  129 (313)
T ss_dssp             CCEEEEEEECCCCSSCEECCGGGGGCTTCSEEEEEEETTEESCCCGGGGGCTTCSEEEEEEECCEEECCGGGGGCTTCCE
T ss_pred             ceEEEEECCCCCccCCcccChhHhCCCCCCeeeCCCCCcccccCChhHhcCCCCCEEECcCCeeCCcCCHHHhCCCCCCE
Confidence            578888888888876  5667788888888888885 6666656777788888888888888877666667777888888


Q ss_pred             EEccCCCCchHHHHHhhCCCCCCEEecCCCCCChHHHHHhhCCC-CCCEEeccCCCCChhhHHHhhCCCCCcEEecccCC
Q 012186          257 LNLGFNEITDECLVHLKGLTNLESLNLDSCGIGDEGLVNLTGLC-NLKCLELSDTQVGSSGLRHLSGLTNLESINLSFTG  335 (469)
Q Consensus       257 L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~-~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~  335 (469)
                      |++++|.+.+..+..+..+++|++|++++|.+.+..+..+..++ +|+.|++++|.+....+..+..++ |+.|++++|.
T Consensus       130 L~Ls~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~l~~l~~~L~~L~L~~N~l~~~~~~~~~~l~-L~~L~Ls~N~  208 (313)
T 1ogq_A          130 LDFSYNALSGTLPPSISSLPNLVGITFDGNRISGAIPDSYGSFSKLFTSMTISRNRLTGKIPPTFANLN-LAFVDLSRNM  208 (313)
T ss_dssp             EECCSSEEESCCCGGGGGCTTCCEEECCSSCCEEECCGGGGCCCTTCCEEECCSSEEEEECCGGGGGCC-CSEEECCSSE
T ss_pred             EeCCCCccCCcCChHHhcCCCCCeEECcCCcccCcCCHHHhhhhhcCcEEECcCCeeeccCChHHhCCc-ccEEECcCCc
Confidence            88888777765566677777777777777776644455566665 666666666655544444455444 6666666655


Q ss_pred             CCchHHHhhhCCCCCcEEEccCCCCCHHHHHHHhcCCCCCEeecCCCCCChhHHHHhHcCCCCCeeeeCCCCCCHHHHHH
Q 012186          336 ISDGSLRKLAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLFGARITDSGAAYLRNFKNLRSLEICGGGLTDAGVKH  415 (469)
Q Consensus       336 ~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~  415 (469)
                      +....+..+..+++|+.|++++|.++...+. +..+++|++|++++|.+++..|.++..+++|+.|++++|.+++..|..
T Consensus       209 l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~-~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~ip~~  287 (313)
T 1ogq_A          209 LEGDASVLFGSDKNTQKIHLAKNSLAFDLGK-VGLSKNLNGLDLRNNRIYGTLPQGLTQLKFLHSLNVSFNNLCGEIPQG  287 (313)
T ss_dssp             EEECCGGGCCTTSCCSEEECCSSEECCBGGG-CCCCTTCCEEECCSSCCEECCCGGGGGCTTCCEEECCSSEEEEECCCS
T ss_pred             ccCcCCHHHhcCCCCCEEECCCCceeeecCc-ccccCCCCEEECcCCcccCcCChHHhcCcCCCEEECcCCcccccCCCC
Confidence            5544444455555555555555555433221 334444555555544444444444444444444444444444333322


Q ss_pred             HhcCCCCCeeeccCC
Q 012186          416 IKDLSSLTLLNLSQN  430 (469)
Q Consensus       416 l~~~~~L~~L~l~~~  430 (469)
                       ..+++|+.+++++|
T Consensus       288 -~~l~~L~~l~l~~N  301 (313)
T 1ogq_A          288 -GNLQRFDVSAYANN  301 (313)
T ss_dssp             -TTGGGSCGGGTCSS
T ss_pred             -ccccccChHHhcCC
Confidence             33344444444444

>1ogq_A PGIP-2, polygalacturonase inhibiting protein; inhibitor; HET: NAG; 1.7A {Phaseolus vulgaris} SCOP: c.10.2.8

Probab=99.94  E-value=7.6e-29  Score=225.11  Aligned_cols=248  Identities=16%  Similarity=0.176  Sum_probs=137.0

Q ss_pred             CCCeeeccCCCCch--hhHHhhhcCCCCcEEECCC-CCCChhHHHHhhcCCCccEEEccCCCCchHHHHHhhCCCCCCEE
Q 012186          205 KLTLLNLEGCPVTA--ACLDSLSALGSLFYLNLNR-CQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESL  281 (469)
Q Consensus       205 ~L~~L~l~~~~~~~--~~~~~~~~~~~L~~L~l~~-~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L  281 (469)
                      +++.|+++++.+..  ..+..+..+++|++|++++ +.+....+..+..+++|++|++++|.+.+..+..+..+++|++|
T Consensus        51 ~l~~L~L~~~~l~~~~~~~~~l~~l~~L~~L~L~~~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L  130 (313)
T 1ogq_A           51 RVNNLDLSGLNLPKPYPIPSSLANLPYLNFLYIGGINNLVGPIPPAIAKLTQLHYLYITHTNVSGAIPDFLSQIKTLVTL  130 (313)
T ss_dssp             CEEEEEEECCCCSSCEECCGGGGGCTTCSEEEEEEETTEESCCCGGGGGCTTCSEEEEEEECCEEECCGGGGGCTTCCEE
T ss_pred             eEEEEECCCCCccCCcccChhHhCCCCCCeeeCCCCCcccccCChhHhcCCCCCEEECcCCeeCCcCCHHHhCCCCCCEE
Confidence            45556666655554  3445555566666666653 55444444555556666666666655554444555555666666


Q ss_pred             ecCCCCCChHHHHHhhCCCCCCEEeccCCCCChhhHHHhhCCC-CCcEEecccCCCCchHHHhhhCCCCCcEEEccCCCC
Q 012186          282 NLDSCGIGDEGLVNLTGLCNLKCLELSDTQVGSSGLRHLSGLT-NLESINLSFTGISDGSLRKLAGLSSLKSLNLDARQI  360 (469)
Q Consensus       282 ~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~-~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~  360 (469)
                      ++++|.+....+..+..+++|++|++++|.+....+..+..++ +|+.|++++|.+....+..+..++ |+.|++++|.+
T Consensus       131 ~Ls~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~l~~l~~~L~~L~L~~N~l~~~~~~~~~~l~-L~~L~Ls~N~l  209 (313)
T 1ogq_A          131 DFSYNALSGTLPPSISSLPNLVGITFDGNRISGAIPDSYGSFSKLFTSMTISRNRLTGKIPPTFANLN-LAFVDLSRNML  209 (313)
T ss_dssp             ECCSSEEESCCCGGGGGCTTCCEEECCSSCCEEECCGGGGCCCTTCCEEECCSSEEEEECCGGGGGCC-CSEEECCSSEE
T ss_pred             eCCCCccCCcCChHHhcCCCCCeEECcCCcccCcCCHHHhhhhhcCcEEECcCCeeeccCChHHhCCc-ccEEECcCCcc
Confidence            6665555433344455556666666666655544444555554 566666666555544444555544 66666666555


Q ss_pred             CHHHHHHHhcCCCCCEeecCCCCCChhHHHHhHcCCCCCeeeeCCCCCCHHHHHHHhcCCCCCeeeccCCCCCChhHHHH
Q 012186          361 TDTGLAALTSLTGLTHLDLFGARITDSGAAYLRNFKNLRSLEICGGGLTDAGVKHIKDLSSLTLLNLSQNCNLTDKTLEL  440 (469)
Q Consensus       361 ~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~l~~~~~~~  440 (469)
                      +...+..+..+++|+.|++++|.+++..+. +..+++|+.|++++|.+++..|..+..+++|++|++++| .+++..|..
T Consensus       210 ~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~-~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N-~l~~~ip~~  287 (313)
T 1ogq_A          210 EGDASVLFGSDKNTQKIHLAKNSLAFDLGK-VGLSKNLNGLDLRNNRIYGTLPQGLTQLKFLHSLNVSFN-NLCGEIPQG  287 (313)
T ss_dssp             EECCGGGCCTTSCCSEEECCSSEECCBGGG-CCCCTTCCEEECCSSCCEECCCGGGGGCTTCCEEECCSS-EEEEECCCS
T ss_pred             cCcCCHHHhcCCCCCEEECCCCceeeecCc-ccccCCCCEEECcCCcccCcCChHHhcCcCCCEEECcCC-cccccCCCC
Confidence            544444555556666666666655544333 445556666666666655555555555666666666666 444444433


Q ss_pred             HHhCcccccccccCCC
Q 012186          441 ISGLTGLVSLNVSNSR  456 (469)
Q Consensus       441 l~~l~~L~~L~l~~~~  456 (469)
                       ..+++|+.+++++|+
T Consensus       288 -~~l~~L~~l~l~~N~  302 (313)
T 1ogq_A          288 -GNLQRFDVSAYANNK  302 (313)
T ss_dssp             -TTGGGSCGGGTCSSS
T ss_pred             -ccccccChHHhcCCC
Confidence             455566666666554

>2z80_A TOLL-like receptor 2, variable lymphocyte recepto; TLR2, lipopeptide, innate immunity, glycoprotein, immune RES inflammatory response; HET: NAG; 1.80A {Homo sapiens}

Probab=99.94  E-value=6.5e-27  Score=216.71  Aligned_cols=251  Identities=23%  Similarity=0.195  Sum_probs=151.5

Q ss_pred             CCCCEEEecccccChhhhhhccCCCCCCeeeccCCCCchhhHHhhhcCCCCcEEECCCCCCChhHHHHhhcCCCccEEEc
Q 012186          180 TNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACLDSLSALGSLFYLNLNRCQLSDDGCEKFSKIGSLKVLNL  259 (469)
Q Consensus       180 ~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l  259 (469)
                      ++|++|+++++.++......+..+++|++|++++|.+....+..+..+++|++|++++|.+.......+..+++|++|++
T Consensus        52 ~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L  131 (353)
T 2z80_A           52 EAVKSLDLSNNRITYISNSDLQRCVNLQALVLTSNGINTIEEDSFSSLGSLEHLDLSYNYLSNLSSSWFKPLSSLTFLNL  131 (353)
T ss_dssp             TTCCEEECTTSCCCEECTTTTTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCSSCCHHHHTTCTTCSEEEC
T ss_pred             ccCcEEECCCCcCcccCHHHhccCCCCCEEECCCCccCccCHhhcCCCCCCCEEECCCCcCCcCCHhHhCCCccCCEEEC
Confidence            46777777777777665556677777777777777776655556667777777777777766655555666777777777


Q ss_pred             cCCCCchHHH-HHhhCCCCCCEEecCCC-CCChHHHHHhhCCCCCCEEeccCCCCChhhHHHhhCCCCCcEEecccCCCC
Q 012186          260 GFNEITDECL-VHLKGLTNLESLNLDSC-GIGDEGLVNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSFTGIS  337 (469)
Q Consensus       260 ~~~~~~~~~~-~~~~~l~~L~~L~l~~~-~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~  337 (469)
                      ++|.+..... ..+..+++|+.|++++| .+....+..+..+++|++|++++|.+....+..+..+++|++|++++|.+.
T Consensus       132 ~~n~l~~l~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~  211 (353)
T 2z80_A          132 LGNPYKTLGETSLFSHLTKLQILRVGNMDTFTKIQRKDFAGLTFLEELEIDASDLQSYEPKSLKSIQNVSHLILHMKQHI  211 (353)
T ss_dssp             TTCCCSSSCSSCSCTTCTTCCEEEEEESSSCCEECTTTTTTCCEEEEEEEEETTCCEECTTTTTTCSEEEEEEEECSCST
T ss_pred             CCCCCcccCchhhhccCCCCcEEECCCCccccccCHHHccCCCCCCEEECCCCCcCccCHHHHhccccCCeecCCCCccc
Confidence            7766654322 24556666777776666 344433444556666666666666665555555666666666666666665


Q ss_pred             chHHHhhhCCCCCcEEEccCCCCCHHHHH---HHhcCCCCCEeecCCCCCChh----HHHHhHcCCCCCeeeeCCCCCCH
Q 012186          338 DGSLRKLAGLSSLKSLNLDARQITDTGLA---ALTSLTGLTHLDLFGARITDS----GAAYLRNFKNLRSLEICGGGLTD  410 (469)
Q Consensus       338 ~~~~~~~~~~~~L~~L~l~~~~~~~~~~~---~l~~~~~L~~L~l~~~~~~~~----~~~~~~~~~~L~~L~l~~~~~~~  410 (469)
                      ......+..+++|+.|++++|.++...+.   .....+.++.+++.++.+.+.    +|.++..+++|+.|++++|+++.
T Consensus       212 ~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~l~~~~~~~~l~~l~L~~~~l~~~~l~~l~~~l~~l~~L~~L~Ls~N~l~~  291 (353)
T 2z80_A          212 LLLEIFVDVTSSVECLELRDTDLDTFHFSELSTGETNSLIKKFTFRNVKITDESLFQVMKLLNQISGLLELEFSRNQLKS  291 (353)
T ss_dssp             THHHHHHHHTTTEEEEEEESCBCTTCCCC------CCCCCCEEEEESCBCCHHHHHHHHHHHHTCTTCCEEECCSSCCCC
T ss_pred             cchhhhhhhcccccEEECCCCccccccccccccccccchhhccccccccccCcchhhhHHHHhcccCCCEEECCCCCCCc
Confidence            54444444556666666666665543221   122345556666666655542    34455566666666666666664


Q ss_pred             HHHHHHhcCCCCCeeeccCC
Q 012186          411 AGVKHIKDLSSLTLLNLSQN  430 (469)
Q Consensus       411 ~~~~~l~~~~~L~~L~l~~~  430 (469)
                      ..+..+..+++|++|++++|
T Consensus       292 i~~~~~~~l~~L~~L~L~~N  311 (353)
T 2z80_A          292 VPDGIFDRLTSLQKIWLHTN  311 (353)
T ss_dssp             CCTTTTTTCTTCCEEECCSS
T ss_pred             cCHHHHhcCCCCCEEEeeCC
Confidence            43323455666666666666

>1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A

Probab=99.93  E-value=4.8e-25  Score=209.96  Aligned_cols=341  Identities=17%  Similarity=0.111  Sum_probs=200.8

Q ss_pred             CCccEEEecCCCCChHhhHhhhcCCCCCEEecCCCcccChhHhHhhhCCCCCCEEeCCCCCcCcHHHHHHHhCC-CCCCE
Q 012186           57 SSLLSVDLSGSDVTDSGLIHLKDCSNLQSLDFNFCIQISDGGLEHLRGLSNLTSLSFRRNNAITAQGMKAFAGL-INLVK  135 (469)
Q Consensus        57 ~~l~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~l-~~L~~  135 (469)
                      .++++|+++++.+++ +|.   -.++|++|++++| .++. .+.   .+++|++|++++|.+..      +... ++|++
T Consensus        71 ~~l~~L~l~~~~l~~-lp~---~~~~L~~L~l~~n-~l~~-lp~---~~~~L~~L~l~~n~l~~------l~~~~~~L~~  135 (454)
T 1jl5_A           71 RQAHELELNNLGLSS-LPE---LPPHLESLVASCN-SLTE-LPE---LPQSLKSLLVDNNNLKA------LSDLPPLLEY  135 (454)
T ss_dssp             HTCSEEECTTSCCSC-CCS---CCTTCSEEECCSS-CCSS-CCC---CCTTCCEEECCSSCCSC------CCSCCTTCCE
T ss_pred             cCCCEEEecCCcccc-CCC---CcCCCCEEEccCC-cCCc-ccc---ccCCCcEEECCCCccCc------ccCCCCCCCE
Confidence            356788888877765 222   2367888888774 4444 222   24678888888876422      1122 57888


Q ss_pred             EecccccccccccccccCCCCccEEEccCCCCCChhhhhcccCCCCCCEEEecccccChhhhhhccCCCCCCeeeccCCC
Q 012186          136 LDLERCTRIHGGLVNLKGLMKLESLNIKWCNCITDSDMKPLSGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCP  215 (469)
Q Consensus       136 L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~  215 (469)
                      |++++|. +...+ .+..+++|++|+++++. +.. .+.   ..++|++|++++|.++...  .+..+++|++|++++|.
T Consensus       136 L~L~~n~-l~~lp-~~~~l~~L~~L~l~~N~-l~~-lp~---~~~~L~~L~L~~n~l~~l~--~~~~l~~L~~L~l~~N~  206 (454)
T 1jl5_A          136 LGVSNNQ-LEKLP-ELQNSSFLKIIDVDNNS-LKK-LPD---LPPSLEFIAAGNNQLEELP--ELQNLPFLTAIYADNNS  206 (454)
T ss_dssp             EECCSSC-CSSCC-CCTTCTTCCEEECCSSC-CSC-CCC---CCTTCCEEECCSSCCSSCC--CCTTCTTCCEEECCSSC
T ss_pred             EECcCCC-CCCCc-ccCCCCCCCEEECCCCc-Ccc-cCC---CcccccEEECcCCcCCcCc--cccCCCCCCEEECCCCc
Confidence            8888864 33333 57788888888888754 332 111   2357888888888777632  57778888888888887


Q ss_pred             CchhhHHhhhcCCCCcEEECCCCCCChhHHHHhhcCCCccEEEccCCCCchHHHHHhhCCCCCCEEecCCCCCChHHHHH
Q 012186          216 VTAACLDSLSALGSLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNLDSCGIGDEGLVN  295 (469)
Q Consensus       216 ~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~  295 (469)
                      +... +.   ..++|++|++++|.+.. .+ .+..+++|+.|++++|.+.+. +   ...++|+.|++++|.+....   
T Consensus       207 l~~l-~~---~~~~L~~L~l~~n~l~~-lp-~~~~l~~L~~L~l~~N~l~~l-~---~~~~~L~~L~l~~N~l~~l~---  273 (454)
T 1jl5_A          207 LKKL-PD---LPLSLESIVAGNNILEE-LP-ELQNLPFLTTIYADNNLLKTL-P---DLPPSLEALNVRDNYLTDLP---  273 (454)
T ss_dssp             CSSC-CC---CCTTCCEEECCSSCCSS-CC-CCTTCTTCCEEECCSSCCSSC-C---SCCTTCCEEECCSSCCSCCC---
T ss_pred             CCcC-CC---CcCcccEEECcCCcCCc-cc-ccCCCCCCCEEECCCCcCCcc-c---ccccccCEEECCCCcccccC---
Confidence            6652 11   23578888888887763 33 367788888888888877642 1   12467888888888765421   


Q ss_pred             hhCCCCCCEEeccCCCCChhhHHHhhCCCCCcEEecccCCCCchHHHhhhCC-CCCcEEEccCCCCCHHHHHHHhcCCCC
Q 012186          296 LTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISDGSLRKLAGL-SSLKSLNLDARQITDTGLAALTSLTGL  374 (469)
Q Consensus       296 ~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~-~~L~~L~l~~~~~~~~~~~~l~~~~~L  374 (469)
                       ..+++|+.|++++|.+....    ...++|+.|++++|.+...     ..+ ++|+.|++++|.+++...    .+++|
T Consensus       274 -~~~~~L~~L~ls~N~l~~l~----~~~~~L~~L~l~~N~l~~i-----~~~~~~L~~L~Ls~N~l~~lp~----~~~~L  339 (454)
T 1jl5_A          274 -ELPQSLTFLDVSENIFSGLS----ELPPNLYYLNASSNEIRSL-----CDLPPSLEELNVSNNKLIELPA----LPPRL  339 (454)
T ss_dssp             -CCCTTCCEEECCSSCCSEES----CCCTTCCEEECCSSCCSEE-----CCCCTTCCEEECCSSCCSCCCC----CCTTC
T ss_pred             -cccCcCCEEECcCCccCccc----CcCCcCCEEECcCCcCCcc-----cCCcCcCCEEECCCCccccccc----cCCcC
Confidence             12467888888888766521    1236788888888877652     233 478888888887775321    35778


Q ss_pred             CEeecCCCCCChhHHHHhHcCCCCCeeeeCCCCCCH--HHHHHHhcC-------------CCCCeeeccCCCCCCh--hH
Q 012186          375 THLDLFGARITDSGAAYLRNFKNLRSLEICGGGLTD--AGVKHIKDL-------------SSLTLLNLSQNCNLTD--KT  437 (469)
Q Consensus       375 ~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~--~~~~~l~~~-------------~~L~~L~l~~~~~l~~--~~  437 (469)
                      ++|++++|.++... .   .+++|+.|++++|.+++  ..|.++..+             ++|++|++++| .+.+  ..
T Consensus       340 ~~L~L~~N~l~~lp-~---~l~~L~~L~L~~N~l~~l~~ip~~l~~L~~n~~~~~i~~~~~~L~~L~ls~N-~l~~~~~i  414 (454)
T 1jl5_A          340 ERLIASFNHLAEVP-E---LPQNLKQLHVEYNPLREFPDIPESVEDLRMNSHLAEVPELPQNLKQLHVETN-PLREFPDI  414 (454)
T ss_dssp             CEEECCSSCCSCCC-C---CCTTCCEEECCSSCCSSCCCCCTTCCEEECCC-----------------------------
T ss_pred             CEEECCCCcccccc-c---hhhhccEEECCCCCCCcCCCChHHHHhhhhcccccccccccCcCCEEECCCC-cCCccccc
Confidence            88888888777533 2   36788888888888777  445555555             78999999999 5655  22


Q ss_pred             HHHHHhCcccccccccCCCCCH
Q 012186          438 LELISGLTGLVSLNVSNSRITS  459 (469)
Q Consensus       438 ~~~l~~l~~L~~L~l~~~~~~~  459 (469)
                      |      ++++.|.+.+|.+..
T Consensus       415 P------~sl~~L~~~~~~~~~  430 (454)
T 1jl5_A          415 P------ESVEDLRMNSERVVD  430 (454)
T ss_dssp             ----------------------
T ss_pred             h------hhHhheeCcCcccCC
Confidence            2      456777777776544

>2z80_A TOLL-like receptor 2, variable lymphocyte recepto; TLR2, lipopeptide, innate immunity, glycoprotein, immune RES inflammatory response; HET: NAG; 1.80A {Homo sapiens}

Probab=99.92  E-value=1.1e-25  Score=208.33  Aligned_cols=278  Identities=19%  Similarity=0.166  Sum_probs=159.1

Q ss_pred             CCCCCEEecccccccccccccccCCCCccEEEccCCCCCChhhhhcccCCCCCCEEEecccccChhhhhhccCCCCCCee
Q 012186          130 LINLVKLDLERCTRIHGGLVNLKGLMKLESLNIKWCNCITDSDMKPLSGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLL  209 (469)
Q Consensus       130 l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L  209 (469)
                      |+.....+.+++ .+...|..+.  ++|++|+++++. +.......+..+++|++|++++|.++...+..+..+++|++|
T Consensus        30 C~~~~~c~~~~~-~l~~iP~~~~--~~L~~L~l~~n~-i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L  105 (353)
T 2z80_A           30 CDRNGICKGSSG-SLNSIPSGLT--EAVKSLDLSNNR-ITYISNSDLQRCVNLQALVLTSNGINTIEEDSFSSLGSLEHL  105 (353)
T ss_dssp             ECTTSEEECCST-TCSSCCTTCC--TTCCEEECTTSC-CCEECTTTTTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEE
T ss_pred             CCCCeEeeCCCC-Cccccccccc--ccCcEEECCCCc-CcccCHHHhccCCCCCEEECCCCccCccCHhhcCCCCCCCEE
Confidence            444444555443 2333333222  466666666633 444444456666666666666666665555556666666666


Q ss_pred             eccCCCCchhhHHhhhcCCCCcEEECCCCCCChhHH-HHhhcCCCccEEEccCCC-CchHHHHHhhCCCCCCEEecCCCC
Q 012186          210 NLEGCPVTAACLDSLSALGSLFYLNLNRCQLSDDGC-EKFSKIGSLKVLNLGFNE-ITDECLVHLKGLTNLESLNLDSCG  287 (469)
Q Consensus       210 ~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~-~~~~~~~~L~~L~l~~~~-~~~~~~~~~~~l~~L~~L~l~~~~  287 (469)
                      ++++|.+....+..+..+++|++|++++|.+..... ..+..+++|+.|++++|. +....+..+..+++|+.|++++|.
T Consensus       106 ~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~l~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~l~~L~~L~l~~n~  185 (353)
T 2z80_A          106 DLSYNYLSNLSSSWFKPLSSLTFLNLLGNPYKTLGETSLFSHLTKLQILRVGNMDTFTKIQRKDFAGLTFLEELEIDASD  185 (353)
T ss_dssp             ECCSSCCSSCCHHHHTTCTTCSEEECTTCCCSSSCSSCSCTTCTTCCEEEEEESSSCCEECTTTTTTCCEEEEEEEEETT
T ss_pred             ECCCCcCCcCCHhHhCCCccCCEEECCCCCCcccCchhhhccCCCCcEEECCCCccccccCHHHccCCCCCCEEECCCCC
Confidence            666666666555556666666666666666654332 245566666666666652 443334455666666666666666


Q ss_pred             CChHHHHHhhCCCCCCEEeccCCCCChhhHHHhhCCCCCcEEecccCCCCchHHHhh---hCCCCCcEEEccCCCCCHH-
Q 012186          288 IGDEGLVNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISDGSLRKL---AGLSSLKSLNLDARQITDT-  363 (469)
Q Consensus       288 ~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~---~~~~~L~~L~l~~~~~~~~-  363 (469)
                      +....+..+..+++|++|++++|.+.......+..+++|+.|++++|.+....+..+   ...+.++.+++.++.+... 
T Consensus       186 l~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~l~~~~~~~~l~~l~L~~~~l~~~~  265 (353)
T 2z80_A          186 LQSYEPKSLKSIQNVSHLILHMKQHILLLEIFVDVTSSVECLELRDTDLDTFHFSELSTGETNSLIKKFTFRNVKITDES  265 (353)
T ss_dssp             CCEECTTTTTTCSEEEEEEEECSCSTTHHHHHHHHTTTEEEEEEESCBCTTCCCC------CCCCCCEEEEESCBCCHHH
T ss_pred             cCccCHHHHhccccCCeecCCCCccccchhhhhhhcccccEEECCCCccccccccccccccccchhhccccccccccCcc
Confidence            655445556666666666666666655444444556666666666665554322221   2345566666666666553 


Q ss_pred             ---HHHHHhcCCCCCEeecCCCCCChhHHHHhHcCCCCCeeeeCCCCCCHH
Q 012186          364 ---GLAALTSLTGLTHLDLFGARITDSGAAYLRNFKNLRSLEICGGGLTDA  411 (469)
Q Consensus       364 ---~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~  411 (469)
                         .+..+..+++|++|++++|+++......+..+++|+.|++++|.+...
T Consensus       266 l~~l~~~l~~l~~L~~L~Ls~N~l~~i~~~~~~~l~~L~~L~L~~N~~~~~  316 (353)
T 2z80_A          266 LFQVMKLLNQISGLLELEFSRNQLKSVPDGIFDRLTSLQKIWLHTNPWDCS  316 (353)
T ss_dssp             HHHHHHHHHTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCBCCC
T ss_pred             hhhhHHHHhcccCCCEEECCCCCCCccCHHHHhcCCCCCEEEeeCCCccCc
Confidence               233455666666666666666654333345666666666666666543

>2ca6_A RAN GTPase-activating protein 1; GAP, GTPase activation, hemihedral twinning, leucine-rich repeat protein, LRR, merohedral twinning; 2.2A {Schizosaccharomyces pombe} SCOP: c.10.1.2 PDB: 1k5g_C* 1k5d_C 1yrg_A

Probab=99.92  E-value=1.7e-23  Score=196.16  Aligned_cols=256  Identities=18%  Similarity=0.180  Sum_probs=162.9

Q ss_pred             hhccCCCCCCeeeccCCCCchhhHHh----hhcCCCCcEEECCCCCCC---hhHHH-------HhhcCCCccEEEccCCC
Q 012186          198 AYLKGLQKLTLLNLEGCPVTAACLDS----LSALGSLFYLNLNRCQLS---DDGCE-------KFSKIGSLKVLNLGFNE  263 (469)
Q Consensus       198 ~~l~~l~~L~~L~l~~~~~~~~~~~~----~~~~~~L~~L~l~~~~~~---~~~~~-------~~~~~~~L~~L~l~~~~  263 (469)
                      ..+..+++|++|++++|.+....+..    +..+++|++|++++|.+.   ...+.       .+..+++|+.|++++|.
T Consensus        26 ~~l~~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~L~~L~Ls~~~~~~l~~~~~~~~~~l~~~l~~~~~L~~L~Ls~n~  105 (386)
T 2ca6_A           26 AVLLEDDSVKEIVLSGNTIGTEAARWLSENIASKKDLEIAEFSDIFTGRVKDEIPEALRLLLQALLKCPKLHTVRLSDNA  105 (386)
T ss_dssp             HHHHHCSCCCEEECTTSEECHHHHHHHHHTTTTCTTCCEEECCSCCTTSCGGGSHHHHHHHHHHHTTCTTCCEEECCSCC
T ss_pred             HHHhcCCCccEEECCCCCCCHHHHHHHHHHHHhCCCccEEeCcccccCccccchhHHHHHHHHHHhhCCcccEEECCCCc
Confidence            45567788888888888877654433    557888888888886433   22222       23577888888888888


Q ss_pred             Cch----HHHHHhhCCCCCCEEecCCCCCChHHHHHhhC----C---------CCCCEEeccCCCCChhhH----HHhhC
Q 012186          264 ITD----ECLVHLKGLTNLESLNLDSCGIGDEGLVNLTG----L---------CNLKCLELSDTQVGSSGL----RHLSG  322 (469)
Q Consensus       264 ~~~----~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~----~---------~~L~~L~l~~~~~~~~~~----~~~~~  322 (469)
                      +..    ..+..+..+++|+.|++++|.++...+..+..    +         ++|++|++++|.+.....    ..+..
T Consensus       106 l~~~~~~~l~~~l~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~l~~~~~~~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~  185 (386)
T 2ca6_A          106 FGPTAQEPLIDFLSKHTPLEHLYLHNNGLGPQAGAKIARALQELAVNKKAKNAPPLRSIICGRNRLENGSMKEWAKTFQS  185 (386)
T ss_dssp             CCTTTHHHHHHHHHHCTTCCEEECCSSCCHHHHHHHHHHHHHHHHHHHHHHTCCCCCEEECCSSCCTGGGHHHHHHHHHH
T ss_pred             CCHHHHHHHHHHHHhCCCCCEEECcCCCCCHHHHHHHHHHHHHHhhhhhcccCCCCcEEECCCCCCCcHHHHHHHHHHHh
Confidence            776    35566777788888888888776544433332    2         677777777777763322    24556


Q ss_pred             CCCCcEEecccCCCCchH----HH-hhhCCCCCcEEEccCCCCC----HHHHHHHhcCCCCCEeecCCCCCChh----HH
Q 012186          323 LTNLESINLSFTGISDGS----LR-KLAGLSSLKSLNLDARQIT----DTGLAALTSLTGLTHLDLFGARITDS----GA  389 (469)
Q Consensus       323 ~~~L~~L~l~~~~~~~~~----~~-~~~~~~~L~~L~l~~~~~~----~~~~~~l~~~~~L~~L~l~~~~~~~~----~~  389 (469)
                      +++|+.|++++|.+....    .. .+..+++|+.|++++|.++    ...+..+..+++|++|++++|.+++.    ++
T Consensus       186 ~~~L~~L~L~~n~l~~~g~~~l~~~~l~~~~~L~~L~Ls~n~l~~~g~~~l~~~l~~~~~L~~L~L~~n~i~~~~~~~l~  265 (386)
T 2ca6_A          186 HRLLHTVKMVQNGIRPEGIEHLLLEGLAYCQELKVLDLQDNTFTHLGSSALAIALKSWPNLRELGLNDCLLSARGAAAVV  265 (386)
T ss_dssp             CTTCCEEECCSSCCCHHHHHHHHHTTGGGCTTCCEEECCSSCCHHHHHHHHHHHGGGCTTCCEEECTTCCCCHHHHHHHH
T ss_pred             CCCcCEEECcCCCCCHhHHHHHHHHHhhcCCCccEEECcCCCCCcHHHHHHHHHHccCCCcCEEECCCCCCchhhHHHHH
Confidence            777777777777776432    22 4556677777777777775    33344556677777777777777765    23


Q ss_pred             HHhHc--CCCCCeeeeCCCCCCH----HHHHHH-hcCCCCCeeeccCCCCCChhHH--HHH-HhCcccccccccC
Q 012186          390 AYLRN--FKNLRSLEICGGGLTD----AGVKHI-KDLSSLTLLNLSQNCNLTDKTL--ELI-SGLTGLVSLNVSN  454 (469)
Q Consensus       390 ~~~~~--~~~L~~L~l~~~~~~~----~~~~~l-~~~~~L~~L~l~~~~~l~~~~~--~~l-~~l~~L~~L~l~~  454 (469)
                      ..+..  +++|+.|++++|.++.    ..|..+ .++++|++|++++| .++...+  ..+ ..+++++.+++..
T Consensus       266 ~~l~~~~~~~L~~L~L~~n~i~~~g~~~l~~~l~~~l~~L~~L~l~~N-~l~~~~~~~~~l~~~l~~~~~~~l~~  339 (386)
T 2ca6_A          266 DAFSKLENIGLQTLRLQYNEIELDAVRTLKTVIDEKMPDLLFLELNGN-RFSEEDDVVDEIREVFSTRGRGELDE  339 (386)
T ss_dssp             HHHHTCSSCCCCEEECCSSCCBHHHHHHHHHHHHHHCTTCCEEECTTS-BSCTTSHHHHHHHHHHHHHTCCEECC
T ss_pred             HHHhhccCCCeEEEECcCCcCCHHHHHHHHHHHHhcCCCceEEEccCC-cCCcchhHHHHHHHHhhhcCcchhhh
Confidence            44433  6777777777777776    345555 45677777777777 4554442  222 2345555454443

>3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae}

Probab=99.92  E-value=3e-26  Score=208.58  Aligned_cols=251  Identities=17%  Similarity=0.186  Sum_probs=154.2

Q ss_pred             cccccChhhhhhccCCCCCCeeeccCCCCchhhHHhhhcCCCCcEEECCCCCCChhHHHHhhcCCCccEEEccCCCCchH
Q 012186          188 SCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACLDSLSALGSLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDE  267 (469)
Q Consensus       188 ~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~  267 (469)
                      +.+.+.......+..+++|++|++++|.+....+..+..+++|++|++++|.+....+  +..+++|+.|++++|.+++ 
T Consensus        18 s~~~l~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~--~~~l~~L~~L~Ls~n~l~~-   94 (317)
T 3o53_A           18 TDSSLKQALASLRQSAWNVKELDLSGNPLSQISAADLAPFTKLELLNLSSNVLYETLD--LESLSTLRTLDLNNNYVQE-   94 (317)
T ss_dssp             CTTTHHHHHHHHHTTGGGCSEEECTTSCCCCCCHHHHTTCTTCCEEECTTSCCEEEEE--ETTCTTCCEEECCSSEEEE-
T ss_pred             cccchhhhHHHHhccCCCCCEEECcCCccCcCCHHHhhCCCcCCEEECCCCcCCcchh--hhhcCCCCEEECcCCcccc-
Confidence            3333433333334445566666666666655555556666666666666666544332  5556666666666666553 


Q ss_pred             HHHHhhCCCCCCEEecCCCCCChHHHHHhhCCCCCCEEeccCCCCChhhHHHhhCCCCCcEEecccCCCCchHHHhhh-C
Q 012186          268 CLVHLKGLTNLESLNLDSCGIGDEGLVNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISDGSLRKLA-G  346 (469)
Q Consensus       268 ~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~-~  346 (469)
                          +...++|+.|++++|.+.....   ..+++|+.|++++|.+....+..++.+++|+.|++++|.+....+..+. .
T Consensus        95 ----l~~~~~L~~L~l~~n~l~~~~~---~~~~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~  167 (317)
T 3o53_A           95 ----LLVGPSIETLHAANNNISRVSC---SRGQGKKNIYLANNKITMLRDLDEGCRSRVQYLDLKLNEIDTVNFAELAAS  167 (317)
T ss_dssp             ----EEECTTCCEEECCSSCCSEEEE---CCCSSCEEEECCSSCCCSGGGBCTGGGSSEEEEECTTSCCCEEEGGGGGGG
T ss_pred             ----ccCCCCcCEEECCCCccCCcCc---cccCCCCEEECCCCCCCCccchhhhccCCCCEEECCCCCCCcccHHHHhhc
Confidence                2233566666666666554321   2356677777777766665555566667777777777776665555443 5


Q ss_pred             CCCCcEEEccCCCCCHHHHHHHhcCCCCCEeecCCCCCChhHHHHhHcCCCCCeeeeCCCCCCHHHHHHHhcCCCCCeee
Q 012186          347 LSSLKSLNLDARQITDTGLAALTSLTGLTHLDLFGARITDSGAAYLRNFKNLRSLEICGGGLTDAGVKHIKDLSSLTLLN  426 (469)
Q Consensus       347 ~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~  426 (469)
                      +++|+.|++++|.++..  .....+++|++|++++|.+++..+ .+..+++|+.|++++|.++.. |..+..+++|+.|+
T Consensus       168 l~~L~~L~L~~N~l~~~--~~~~~l~~L~~L~Ls~N~l~~l~~-~~~~l~~L~~L~L~~N~l~~l-~~~~~~l~~L~~L~  243 (317)
T 3o53_A          168 SDTLEHLNLQYNFIYDV--KGQVVFAKLKTLDLSSNKLAFMGP-EFQSAAGVTWISLRNNKLVLI-EKALRFSQNLEHFD  243 (317)
T ss_dssp             TTTCCEEECTTSCCCEE--ECCCCCTTCCEEECCSSCCCEECG-GGGGGTTCSEEECTTSCCCEE-CTTCCCCTTCCEEE
T ss_pred             cCcCCEEECCCCcCccc--ccccccccCCEEECCCCcCCcchh-hhcccCcccEEECcCCcccch-hhHhhcCCCCCEEE
Confidence            67777777777777654  222246777777777777776433 366677777777777777754 44566677777777


Q ss_pred             ccCCCCCC-hhHHHHHHhCccccccccc
Q 012186          427 LSQNCNLT-DKTLELISGLTGLVSLNVS  453 (469)
Q Consensus       427 l~~~~~l~-~~~~~~l~~l~~L~~L~l~  453 (469)
                      +++| .+. ...+..+..+++|+.|+++
T Consensus       244 l~~N-~~~~~~~~~~~~~~~~L~~l~l~  270 (317)
T 3o53_A          244 LRGN-GFHCGTLRDFFSKNQRVQTVAKQ  270 (317)
T ss_dssp             CTTC-CCBHHHHHHHHHTCHHHHHHHHH
T ss_pred             ccCC-CccCcCHHHHHhccccceEEECC
Confidence            7777 444 5566667777777777765

>3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A

Probab=99.91  E-value=1e-25  Score=215.70  Aligned_cols=245  Identities=19%  Similarity=0.186  Sum_probs=196.2

Q ss_pred             CCEEEecccccChhhhhhccCCCCCCeeeccCCCCchhhHHhhhcCCCCcEEECCCCCCChhHHHHhhcCCCccEEEccC
Q 012186          182 LKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACLDSLSALGSLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGF  261 (469)
Q Consensus       182 L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~  261 (469)
                      ...++..+..++..+. .  -.+++++|++++|.+....+..|..+++|+.|++++|.+....+..|..+++|+.|++++
T Consensus        56 ~~~v~c~~~~l~~iP~-~--~~~~l~~L~L~~n~i~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~  132 (452)
T 3zyi_A           56 FSKVVCTRRGLSEVPQ-G--IPSNTRYLNLMENNIQMIQADTFRHLHHLEVLQLGRNSIRQIEVGAFNGLASLNTLELFD  132 (452)
T ss_dssp             SCEEECCSSCCSSCCS-C--CCTTCSEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCS
T ss_pred             CcEEEECCCCcCccCC-C--CCCCccEEECcCCcCceECHHHcCCCCCCCEEECCCCccCCcChhhccCcccCCEEECCC
Confidence            4566666666664332 2  236899999999998887778888999999999999998887777888899999999999


Q ss_pred             CCCchHHHHHhhCCCCCCEEecCCCCCChHHHHHhhCCCCCCEEeccCC-CCChhhHHHhhCCCCCcEEecccCCCCchH
Q 012186          262 NEITDECLVHLKGLTNLESLNLDSCGIGDEGLVNLTGLCNLKCLELSDT-QVGSSGLRHLSGLTNLESINLSFTGISDGS  340 (469)
Q Consensus       262 ~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~-~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~  340 (469)
                      |.++...+..+..+++|+.|++++|.+.......+..+++|+.|++.++ .+.......+..+++|+.|++++|.+... 
T Consensus       133 n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~~~~l~~i~~~~~~~l~~L~~L~L~~n~l~~~-  211 (452)
T 3zyi_A          133 NWLTVIPSGAFEYLSKLRELWLRNNPIESIPSYAFNRVPSLMRLDLGELKKLEYISEGAFEGLFNLKYLNLGMCNIKDM-  211 (452)
T ss_dssp             SCCSBCCTTTSSSCTTCCEEECCSCCCCEECTTTTTTCTTCCEEECCCCTTCCEECTTTTTTCTTCCEEECTTSCCSSC-
T ss_pred             CcCCccChhhhcccCCCCEEECCCCCcceeCHhHHhcCCcccEEeCCCCCCccccChhhccCCCCCCEEECCCCccccc-
Confidence            9888766666788899999999999887666667788899999999884 45444445677888899999988887764 


Q ss_pred             HHhhhCCCCCcEEEccCCCCCHHHHHHHhcCCCCCEeecCCCCCChhHHHHhHcCCCCCeeeeCCCCCCHHHHHHHhcCC
Q 012186          341 LRKLAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLFGARITDSGAAYLRNFKNLRSLEICGGGLTDAGVKHIKDLS  420 (469)
Q Consensus       341 ~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~  420 (469)
                       ..+..+++|+.|++++|.++...+..+..+++|++|++++|.+++..+..+..+++|+.|++++|.++...+..+..++
T Consensus       212 -~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~  290 (452)
T 3zyi_A          212 -PNLTPLVGLEELEMSGNHFPEIRPGSFHGLSSLKKLWVMNSQVSLIERNAFDGLASLVELNLAHNNLSSLPHDLFTPLR  290 (452)
T ss_dssp             -CCCTTCTTCCEEECTTSCCSEECGGGGTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCSCCCTTSSTTCT
T ss_pred             -ccccccccccEEECcCCcCcccCcccccCccCCCEEEeCCCcCceECHHHhcCCCCCCEEECCCCcCCccChHHhcccc
Confidence             2466778888888888888887777788888888888888888887777788888888888888888877666677788


Q ss_pred             CCCeeeccCCC
Q 012186          421 SLTLLNLSQNC  431 (469)
Q Consensus       421 ~L~~L~l~~~~  431 (469)
                      +|+.|++++|+
T Consensus       291 ~L~~L~L~~Np  301 (452)
T 3zyi_A          291 YLVELHLHHNP  301 (452)
T ss_dssp             TCCEEECCSSC
T ss_pred             CCCEEEccCCC
Confidence            88888888885

>3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens}

Probab=99.91  E-value=1.1e-25  Score=214.86  Aligned_cols=245  Identities=19%  Similarity=0.212  Sum_probs=201.1

Q ss_pred             CCEEEecccccChhhhhhccCCCCCCeeeccCCCCchhhHHhhhcCCCCcEEECCCCCCChhHHHHhhcCCCccEEEccC
Q 012186          182 LKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACLDSLSALGSLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGF  261 (469)
Q Consensus       182 L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~  261 (469)
                      .+.++..+..++..+. .+  .++++.|++++|.+....+..|..+++|++|++++|.+....+..|..+++|+.|++++
T Consensus        45 ~~~v~c~~~~l~~iP~-~~--~~~l~~L~L~~n~i~~~~~~~~~~l~~L~~L~Ls~n~i~~i~~~~~~~l~~L~~L~L~~  121 (440)
T 3zyj_A           45 FSKVICVRKNLREVPD-GI--STNTRLLNLHENQIQIIKVNSFKHLRHLEILQLSRNHIRTIEIGAFNGLANLNTLELFD  121 (440)
T ss_dssp             SCEEECCSCCCSSCCS-CC--CTTCSEEECCSCCCCEECTTTTSSCSSCCEEECCSSCCCEECGGGGTTCSSCCEEECCS
T ss_pred             CCEEEeCCCCcCcCCC-CC--CCCCcEEEccCCcCCeeCHHHhhCCCCCCEEECCCCcCCccChhhccCCccCCEEECCC
Confidence            4566666666664432 22  36789999999998887778889999999999999999887778888999999999999


Q ss_pred             CCCchHHHHHhhCCCCCCEEecCCCCCChHHHHHhhCCCCCCEEeccCC-CCChhhHHHhhCCCCCcEEecccCCCCchH
Q 012186          262 NEITDECLVHLKGLTNLESLNLDSCGIGDEGLVNLTGLCNLKCLELSDT-QVGSSGLRHLSGLTNLESINLSFTGISDGS  340 (469)
Q Consensus       262 ~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~-~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~  340 (469)
                      |.++...+..+..+++|+.|++++|.+.......+..+++|+.|++.++ .+.......+..+++|+.|++++|.+....
T Consensus       122 n~l~~~~~~~~~~l~~L~~L~L~~N~i~~~~~~~~~~l~~L~~L~l~~~~~l~~i~~~~~~~l~~L~~L~L~~n~l~~~~  201 (440)
T 3zyj_A          122 NRLTTIPNGAFVYLSKLKELWLRNNPIESIPSYAFNRIPSLRRLDLGELKRLSYISEGAFEGLSNLRYLNLAMCNLREIP  201 (440)
T ss_dssp             SCCSSCCTTTSCSCSSCCEEECCSCCCCEECTTTTTTCTTCCEEECCCCTTCCEECTTTTTTCSSCCEEECTTSCCSSCC
T ss_pred             CcCCeeCHhHhhccccCceeeCCCCcccccCHHHhhhCcccCEeCCCCCCCcceeCcchhhcccccCeecCCCCcCcccc
Confidence            9988766667888999999999999888766667888999999999885 455444556788899999999999877543


Q ss_pred             HHhhhCCCCCcEEEccCCCCCHHHHHHHhcCCCCCEeecCCCCCChhHHHHhHcCCCCCeeeeCCCCCCHHHHHHHhcCC
Q 012186          341 LRKLAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLFGARITDSGAAYLRNFKNLRSLEICGGGLTDAGVKHIKDLS  420 (469)
Q Consensus       341 ~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~  420 (469)
                        .+..+++|+.|++++|.++...+..+..+++|++|++++|.+++..+..+..+++|+.|++++|+++...+..+..++
T Consensus       202 --~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~  279 (440)
T 3zyj_A          202 --NLTPLIKLDELDLSGNHLSAIRPGSFQGLMHLQKLWMIQSQIQVIERNAFDNLQSLVEINLAHNNLTLLPHDLFTPLH  279 (440)
T ss_dssp             --CCTTCSSCCEEECTTSCCCEECTTTTTTCTTCCEEECTTCCCCEECTTSSTTCTTCCEEECTTSCCCCCCTTTTSSCT
T ss_pred             --ccCCCcccCEEECCCCccCccChhhhccCccCCEEECCCCceeEEChhhhcCCCCCCEEECCCCCCCccChhHhcccc
Confidence              466788899999999988887777888889999999999988888788888889999999999988887777777888


Q ss_pred             CCCeeeccCCC
Q 012186          421 SLTLLNLSQNC  431 (469)
Q Consensus       421 ~L~~L~l~~~~  431 (469)
                      +|+.|++++|+
T Consensus       280 ~L~~L~L~~Np  290 (440)
T 3zyj_A          280 HLERIHLHHNP  290 (440)
T ss_dssp             TCCEEECCSSC
T ss_pred             CCCEEEcCCCC
Confidence            89999999885

>1ozn_A Reticulon 4 receptor; NOGO receptor, MAD, myelination inhibition, OMGP, MAG, NOGO- signal transduction, neuronal regeneration, ligand binding; HET: NDG MAN NAG BMA; 1.52A {Homo sapiens} SCOP: c.10.2.7 PDB: 1p8t_A* 3kj4_A*

Probab=99.91  E-value=1e-25  Score=202.22  Aligned_cols=206  Identities=20%  Similarity=0.234  Sum_probs=107.4

Q ss_pred             CCCCEEEecccccChhhhhhccCCCCCCeeeccCCCCchhhHHhhhcCCCCcEEECCCCC-CChhHHHHhhcCCCccEEE
Q 012186          180 TNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACLDSLSALGSLFYLNLNRCQ-LSDDGCEKFSKIGSLKVLN  258 (469)
Q Consensus       180 ~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~-~~~~~~~~~~~~~~L~~L~  258 (469)
                      ++|++|+++++.++......+..+++|++|++++|.+....+..+..+++|++|++++|. +....+..+..+++|+.|+
T Consensus        32 ~~l~~L~l~~n~i~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~~l~~~~~~~~~~l~~L~~L~  111 (285)
T 1ozn_A           32 AASQRIFLHGNRISHVPAASFRACRNLTILWLHSNVLARIDAAAFTGLALLEQLDLSDNAQLRSVDPATFHGLGRLHTLH  111 (285)
T ss_dssp             TTCSEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSCTTCCCCCTTTTTTCTTCCEEE
T ss_pred             CCceEEEeeCCcCCccCHHHcccCCCCCEEECCCCccceeCHhhcCCccCCCEEeCCCCCCccccCHHHhcCCcCCCEEE
Confidence            466666666666665555555666666666666665555444555555666666666554 4443344455555555555


Q ss_pred             ccCCCCchHHHHHhhCCCCCCEEecCCCCCChHHHHHhhCCCCCCEEeccCCCCChhhHHHhhCCCCCcEEecccCCCCc
Q 012186          259 LGFNEITDECLVHLKGLTNLESLNLDSCGIGDEGLVNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISD  338 (469)
Q Consensus       259 l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~  338 (469)
                      +++|.+....+..+..+++|++|++++|.+..                        .....++.+++|+.|++++|.+..
T Consensus       112 l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~------------------------~~~~~~~~l~~L~~L~l~~n~l~~  167 (285)
T 1ozn_A          112 LDRCGLQELGPGLFRGLAALQYLYLQDNALQA------------------------LPDDTFRDLGNLTHLFLHGNRISS  167 (285)
T ss_dssp             CTTSCCCCCCTTTTTTCTTCCEEECCSSCCCC------------------------CCTTTTTTCTTCCEEECCSSCCCE
T ss_pred             CCCCcCCEECHhHhhCCcCCCEEECCCCcccc------------------------cCHhHhccCCCccEEECCCCcccc
Confidence            55555544333344445555555555554443                        333333444444444444444444


Q ss_pred             hHHHhhhCCCCCcEEEccCCCCCHHHHHHHhcCCCCCEeecCCCCCChhHHHHhHcCCCCCeeeeCCCCCC
Q 012186          339 GSLRKLAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLFGARITDSGAAYLRNFKNLRSLEICGGGLT  409 (469)
Q Consensus       339 ~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~  409 (469)
                      ..+..+..+++|+.|++++|.++...+..+..+++|+.|++++|.+++..+..+..+++|+.|++++|.+.
T Consensus       168 ~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~N~~~  238 (285)
T 1ozn_A          168 VPERAFRGLHSLDRLLLHQNRVAHVHPHAFRDLGRLMTLYLFANNLSALPTEALAPLRALQYLRLNDNPWV  238 (285)
T ss_dssp             ECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCSCCCHHHHTTCTTCCEEECCSSCEE
T ss_pred             cCHHHhcCccccCEEECCCCcccccCHhHccCcccccEeeCCCCcCCcCCHHHcccCcccCEEeccCCCcc
Confidence            33333444455555555555554444444445555555555555555544445555555555555555443

>3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens}

Probab=99.91  E-value=7.4e-25  Score=209.00  Aligned_cols=246  Identities=19%  Similarity=0.202  Sum_probs=211.1

Q ss_pred             ccEEEccCCCCCChhhhhcccCCCCCCEEEecccccChhhhhhccCCCCCCeeeccCCCCchhhHHhhhcCCCCcEEECC
Q 012186          157 LESLNIKWCNCITDSDMKPLSGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACLDSLSALGSLFYLNLN  236 (469)
Q Consensus       157 L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~  236 (469)
                      .+.++..+ ..+.. .+..+  .++++.|++++|.+.......+..+++|++|++++|.+....+..|..+++|++|+++
T Consensus        45 ~~~v~c~~-~~l~~-iP~~~--~~~l~~L~L~~n~i~~~~~~~~~~l~~L~~L~Ls~n~i~~i~~~~~~~l~~L~~L~L~  120 (440)
T 3zyj_A           45 FSKVICVR-KNLRE-VPDGI--STNTRLLNLHENQIQIIKVNSFKHLRHLEILQLSRNHIRTIEIGAFNGLANLNTLELF  120 (440)
T ss_dssp             SCEEECCS-CCCSS-CCSCC--CTTCSEEECCSCCCCEECTTTTSSCSSCCEEECCSSCCCEECGGGGTTCSSCCEEECC
T ss_pred             CCEEEeCC-CCcCc-CCCCC--CCCCcEEEccCCcCCeeCHHHhhCCCCCCEEECCCCcCCccChhhccCCccCCEEECC
Confidence            44555554 22332 22333  3789999999999998888889999999999999999988877889999999999999


Q ss_pred             CCCCChhHHHHhhcCCCccEEEccCCCCchHHHHHhhCCCCCCEEecCCC-CCChHHHHHhhCCCCCCEEeccCCCCChh
Q 012186          237 RCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNLDSC-GIGDEGLVNLTGLCNLKCLELSDTQVGSS  315 (469)
Q Consensus       237 ~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~-~~~~~~~~~~~~~~~L~~L~l~~~~~~~~  315 (469)
                      +|.+.......+..+++|+.|++++|.+.......+..+++|+.|+++++ .+.......+..+++|+.|++++|.+...
T Consensus       121 ~n~l~~~~~~~~~~l~~L~~L~L~~N~i~~~~~~~~~~l~~L~~L~l~~~~~l~~i~~~~~~~l~~L~~L~L~~n~l~~~  200 (440)
T 3zyj_A          121 DNRLTTIPNGAFVYLSKLKELWLRNNPIESIPSYAFNRIPSLRRLDLGELKRLSYISEGAFEGLSNLRYLNLAMCNLREI  200 (440)
T ss_dssp             SSCCSSCCTTTSCSCSSCCEEECCSCCCCEECTTTTTTCTTCCEEECCCCTTCCEECTTTTTTCSSCCEEECTTSCCSSC
T ss_pred             CCcCCeeCHhHhhccccCceeeCCCCcccccCHHHhhhCcccCEeCCCCCCCcceeCcchhhcccccCeecCCCCcCccc
Confidence            99998776677889999999999999998766667889999999999985 45544455688899999999999988764


Q ss_pred             hHHHhhCCCCCcEEecccCCCCchHHHhhhCCCCCcEEEccCCCCCHHHHHHHhcCCCCCEeecCCCCCChhHHHHhHcC
Q 012186          316 GLRHLSGLTNLESINLSFTGISDGSLRKLAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLFGARITDSGAAYLRNF  395 (469)
Q Consensus       316 ~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~  395 (469)
                      .  .+..+++|+.|++++|.+....+..+..+++|+.|++++|.++...+..+..+++|+.|++++|++++..+..+..+
T Consensus       201 ~--~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l  278 (440)
T 3zyj_A          201 P--NLTPLIKLDELDLSGNHLSAIRPGSFQGLMHLQKLWMIQSQIQVIERNAFDNLQSLVEINLAHNNLTLLPHDLFTPL  278 (440)
T ss_dssp             C--CCTTCSSCCEEECTTSCCCEECTTTTTTCTTCCEEECTTCCCCEECTTSSTTCTTCCEEECTTSCCCCCCTTTTSSC
T ss_pred             c--ccCCCcccCEEECCCCccCccChhhhccCccCCEEECCCCceeEEChhhhcCCCCCCEEECCCCCCCccChhHhccc
Confidence            3  47789999999999999998888889999999999999999998878888899999999999999999888888899


Q ss_pred             CCCCeeeeCCCCC
Q 012186          396 KNLRSLEICGGGL  408 (469)
Q Consensus       396 ~~L~~L~l~~~~~  408 (469)
                      ++|+.|++++|.+
T Consensus       279 ~~L~~L~L~~Np~  291 (440)
T 3zyj_A          279 HHLERIHLHHNPW  291 (440)
T ss_dssp             TTCCEEECCSSCE
T ss_pred             cCCCEEEcCCCCc
Confidence            9999999999765

>3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A

Probab=99.91  E-value=6.9e-25  Score=209.98  Aligned_cols=227  Identities=21%  Similarity=0.213  Sum_probs=203.5

Q ss_pred             CCCCEEEecccccChhhhhhccCCCCCCeeeccCCCCchhhHHhhhcCCCCcEEECCCCCCChhHHHHhhcCCCccEEEc
Q 012186          180 TNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACLDSLSALGSLFYLNLNRCQLSDDGCEKFSKIGSLKVLNL  259 (469)
Q Consensus       180 ~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l  259 (469)
                      +++++|++++|.++......+..+++|++|++++|.+....+..+..+++|++|++++|.+....+..+..+++|+.|++
T Consensus        75 ~~l~~L~L~~n~i~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L  154 (452)
T 3zyi_A           75 SNTRYLNLMENNIQMIQADTFRHLHHLEVLQLGRNSIRQIEVGAFNGLASLNTLELFDNWLTVIPSGAFEYLSKLRELWL  154 (452)
T ss_dssp             TTCSEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCSBCCTTTSSSCTTCCEEEC
T ss_pred             CCccEEECcCCcCceECHHHcCCCCCCCEEECCCCccCCcChhhccCcccCCEEECCCCcCCccChhhhcccCCCCEEEC
Confidence            68999999999999888888999999999999999998887788999999999999999998877777889999999999


Q ss_pred             cCCCCchHHHHHhhCCCCCCEEecCCC-CCChHHHHHhhCCCCCCEEeccCCCCChhhHHHhhCCCCCcEEecccCCCCc
Q 012186          260 GFNEITDECLVHLKGLTNLESLNLDSC-GIGDEGLVNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISD  338 (469)
Q Consensus       260 ~~~~~~~~~~~~~~~l~~L~~L~l~~~-~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~  338 (469)
                      ++|.+.......+..+++|+.|+++++ .+.......+..+++|+.|++++|.+....  .+..+++|+.|++++|.+.+
T Consensus       155 ~~N~l~~~~~~~~~~l~~L~~L~l~~~~~l~~i~~~~~~~l~~L~~L~L~~n~l~~~~--~~~~l~~L~~L~Ls~N~l~~  232 (452)
T 3zyi_A          155 RNNPIESIPSYAFNRVPSLMRLDLGELKKLEYISEGAFEGLFNLKYLNLGMCNIKDMP--NLTPLVGLEELEMSGNHFPE  232 (452)
T ss_dssp             CSCCCCEECTTTTTTCTTCCEEECCCCTTCCEECTTTTTTCTTCCEEECTTSCCSSCC--CCTTCTTCCEEECTTSCCSE
T ss_pred             CCCCcceeCHhHHhcCCcccEEeCCCCCCccccChhhccCCCCCCEEECCCCcccccc--cccccccccEEECcCCcCcc
Confidence            999998766667889999999999985 455444556788999999999999887643  57789999999999999999


Q ss_pred             hHHHhhhCCCCCcEEEccCCCCCHHHHHHHhcCCCCCEeecCCCCCChhHHHHhHcCCCCCeeeeCCCCC
Q 012186          339 GSLRKLAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLFGARITDSGAAYLRNFKNLRSLEICGGGL  408 (469)
Q Consensus       339 ~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~  408 (469)
                      ..+..+..+++|+.|++++|.++...+..+..+++|+.|++++|++++..+..+..+++|+.|++++|.+
T Consensus       233 ~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~Np~  302 (452)
T 3zyi_A          233 IRPGSFHGLSSLKKLWVMNSQVSLIERNAFDGLASLVELNLAHNNLSSLPHDLFTPLRYLVELHLHHNPW  302 (452)
T ss_dssp             ECGGGGTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCSCCCTTSSTTCTTCCEEECCSSCE
T ss_pred             cCcccccCccCCCEEEeCCCcCceECHHHhcCCCCCCEEECCCCcCCccChHHhccccCCCEEEccCCCc
Confidence            8888999999999999999999988788888999999999999999988878888999999999999864

>1ozn_A Reticulon 4 receptor; NOGO receptor, MAD, myelination inhibition, OMGP, MAG, NOGO- signal transduction, neuronal regeneration, ligand binding; HET: NDG MAN NAG BMA; 1.52A {Homo sapiens} SCOP: c.10.2.7 PDB: 1p8t_A* 3kj4_A*

Probab=99.91  E-value=6.5e-25  Score=196.92  Aligned_cols=223  Identities=20%  Similarity=0.208  Sum_probs=183.2

Q ss_pred             CeeeccCCCCchhhHHhhhcCCCCcEEECCCCCCChhHHHHhhcCCCccEEEccCCCCchHHHHHhhCCCCCCEEecCCC
Q 012186          207 TLLNLEGCPVTAACLDSLSALGSLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNLDSC  286 (469)
Q Consensus       207 ~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~  286 (469)
                      ++++.+++.+... |.  ...++++.|+++++.+....+..+..+++|+.|++++|.+....+..+..+++|+.|++++|
T Consensus        14 ~~~~c~~~~l~~i-p~--~~~~~l~~L~l~~n~i~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n   90 (285)
T 1ozn_A           14 VTTSCPQQGLQAV-PV--GIPAASQRIFLHGNRISHVPAASFRACRNLTILWLHSNVLARIDAAAFTGLALLEQLDLSDN   90 (285)
T ss_dssp             CEEECCSSCCSSC-CT--TCCTTCSEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSC
T ss_pred             eEEEcCcCCcccC-Cc--CCCCCceEEEeeCCcCCccCHHHcccCCCCCEEECCCCccceeCHhhcCCccCCCEEeCCCC
Confidence            5677777766654 22  23478999999999988877677888999999999999888766777888899999999988


Q ss_pred             C-CChHHHHHhhCCCCCCEEeccCCCCChhhHHHhhCCCCCcEEecccCCCCchHHHhhhCCCCCcEEEccCCCCCHHHH
Q 012186          287 G-IGDEGLVNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISDGSLRKLAGLSSLKSLNLDARQITDTGL  365 (469)
Q Consensus       287 ~-~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~  365 (469)
                      . +....+..+..+++|++|++.+|.+....+..+..+++|++|++++|.+....+..+..+++|+.|++++|.++....
T Consensus        91 ~~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~  170 (285)
T 1ozn_A           91 AQLRSVDPATFHGLGRLHTLHLDRCGLQELGPGLFRGLAALQYLYLQDNALQALPDDTFRDLGNLTHLFLHGNRISSVPE  170 (285)
T ss_dssp             TTCCCCCTTTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCEECT
T ss_pred             CCccccCHHHhcCCcCCCEEECCCCcCCEECHhHhhCCcCCCEEECCCCcccccCHhHhccCCCccEEECCCCcccccCH
Confidence            6 666556677888899999999998887767778888999999999998887766677888899999999988887766


Q ss_pred             HHHhcCCCCCEeecCCCCCChhHHHHhHcCCCCCeeeeCCCCCCHHHHHHHhcCCCCCeeeccCCCC
Q 012186          366 AALTSLTGLTHLDLFGARITDSGAAYLRNFKNLRSLEICGGGLTDAGVKHIKDLSSLTLLNLSQNCN  432 (469)
Q Consensus       366 ~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~  432 (469)
                      ..+..+++|++|++++|.+++..+..+..+++|+.|++++|.+++..+..+..+++|++|++++|+.
T Consensus       171 ~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~N~~  237 (285)
T 1ozn_A          171 RAFRGLHSLDRLLLHQNRVAHVHPHAFRDLGRLMTLYLFANNLSALPTEALAPLRALQYLRLNDNPW  237 (285)
T ss_dssp             TTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCSCCCHHHHTTCTTCCEEECCSSCE
T ss_pred             HHhcCccccCEEECCCCcccccCHhHccCcccccEeeCCCCcCCcCCHHHcccCcccCEEeccCCCc
Confidence            6677888999999999988888788888888999999999988888777788888999999998853

>2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like receptor, MD-2, LPS, leucine-rich repeat, glycoprotein, immune response; HET: NAG BMA FUL; 1.90A {Eptatretus burgeri}

Probab=99.91  E-value=2e-25  Score=202.58  Aligned_cols=228  Identities=20%  Similarity=0.192  Sum_probs=132.7

Q ss_pred             CCCCEEEecccccChhhhhhccCCCCCCeeeccCCCCchhh--HHhhhcCCCCcEEECCCCCCChhHHHHhhcCCCccEE
Q 012186          180 TNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAAC--LDSLSALGSLFYLNLNRCQLSDDGCEKFSKIGSLKVL  257 (469)
Q Consensus       180 ~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~--~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L  257 (469)
                      ++|++|+++++.++......+..+++|++|++++|.+....  +..+..+++|++|++++|.+.. .+..+..+++|+.|
T Consensus        28 ~~l~~L~L~~n~l~~i~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~L~~L~Ls~n~i~~-l~~~~~~l~~L~~L  106 (306)
T 2z66_A           28 SSATRLELESNKLQSLPHGVFDKLTQLTKLSLSSNGLSFKGCCSQSDFGTTSLKYLDLSFNGVIT-MSSNFLGLEQLEHL  106 (306)
T ss_dssp             TTCCEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCEEEEEEHHHHSCSCCCEEECCSCSEEE-EEEEEETCTTCCEE
T ss_pred             CCCCEEECCCCccCccCHhHhhccccCCEEECCCCccCcccCcccccccccccCEEECCCCcccc-ChhhcCCCCCCCEE
Confidence            57777888777777655555677777777777777665321  3344556777777777776653 23335566777777


Q ss_pred             EccCCCCchHHH-HHhhCCCCCCEEecCCCCCChHHHHHhhCCCCCCEEeccCCCCCh-hhHHHhhCCCCCcEEecccCC
Q 012186          258 NLGFNEITDECL-VHLKGLTNLESLNLDSCGIGDEGLVNLTGLCNLKCLELSDTQVGS-SGLRHLSGLTNLESINLSFTG  335 (469)
Q Consensus       258 ~l~~~~~~~~~~-~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~-~~~~~~~~~~~L~~L~l~~~~  335 (469)
                      ++++|.+..... ..+..+++|+.|++++|.+....+..+..+++|++|++++|.+.. ..+..+..+++|+.|++++|.
T Consensus       107 ~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~Ls~n~  186 (306)
T 2z66_A          107 DFQHSNLKQMSEFSVFLSLRNLIYLDISHTHTRVAFNGIFNGLSSLEVLKMAGNSFQENFLPDIFTELRNLTFLDLSQCQ  186 (306)
T ss_dssp             ECTTSEEESSTTTTTTTTCTTCCEEECTTSCCEECSTTTTTTCTTCCEEECTTCEEGGGEECSCCTTCTTCCEEECTTSC
T ss_pred             ECCCCcccccccchhhhhccCCCEEECCCCcCCccchhhcccCcCCCEEECCCCccccccchhHHhhCcCCCEEECCCCC
Confidence            777766654332 345566666666666666554444445556666666666665443 233344555566666666655


Q ss_pred             CCchHHHhhhCCCCCcEEEccCCCCCHHHHHHHhcCCCCCEeecCCCCCChhHHHHhHcCC-CCCeeeeCCCCC
Q 012186          336 ISDGSLRKLAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLFGARITDSGAAYLRNFK-NLRSLEICGGGL  408 (469)
Q Consensus       336 ~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~-~L~~L~l~~~~~  408 (469)
                      +.+..+..+..+++|+.|++++|.++......+..+++|+.|++++|.+++..+..+..++ +|+.|++++|.+
T Consensus       187 l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~~~~~L~~L~L~~N~~  260 (306)
T 2z66_A          187 LEQLSPTAFNSLSSLQVLNMSHNNFFSLDTFPYKCLNSLQVLDYSLNHIMTSKKQELQHFPSSLAFLNLTQNDF  260 (306)
T ss_dssp             CCEECTTTTTTCTTCCEEECTTSCCSBCCSGGGTTCTTCCEEECTTSCCCBCSSSSCCCCCTTCCEEECTTCCE
T ss_pred             cCCcCHHHhcCCCCCCEEECCCCccCccChhhccCcccCCEeECCCCCCcccCHHHHHhhhccCCEEEccCCCe
Confidence            5554444555555555555555555544333444555555555555555554444444442 555555555544

>2ca6_A RAN GTPase-activating protein 1; GAP, GTPase activation, hemihedral twinning, leucine-rich repeat protein, LRR, merohedral twinning; 2.2A {Schizosaccharomyces pombe} SCOP: c.10.1.2 PDB: 1k5g_C* 1k5d_C 1yrg_A

Probab=99.91  E-value=1.8e-22  Score=189.28  Aligned_cols=237  Identities=16%  Similarity=0.186  Sum_probs=123.4

Q ss_pred             ccCCCCCCEEEecccccChhhhhh----ccCCCCCCeeeccCCCCc---hhhHH-------hhhcCCCCcEEECCCCCCC
Q 012186          176 LSGLTNLKSLQISCSKVTDSGIAY----LKGLQKLTLLNLEGCPVT---AACLD-------SLSALGSLFYLNLNRCQLS  241 (469)
Q Consensus       176 ~~~~~~L~~L~l~~~~~~~~~~~~----l~~l~~L~~L~l~~~~~~---~~~~~-------~~~~~~~L~~L~l~~~~~~  241 (469)
                      +..+++|++|++++|.+.......    +..+++|++|++++|.+.   ...|.       .+..+++|++|++++|.+.
T Consensus        28 l~~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~L~~L~Ls~~~~~~l~~~~~~~~~~l~~~l~~~~~L~~L~Ls~n~l~  107 (386)
T 2ca6_A           28 LLEDDSVKEIVLSGNTIGTEAARWLSENIASKKDLEIAEFSDIFTGRVKDEIPEALRLLLQALLKCPKLHTVRLSDNAFG  107 (386)
T ss_dssp             HHHCSCCCEEECTTSEECHHHHHHHHHTTTTCTTCCEEECCSCCTTSCGGGSHHHHHHHHHHHTTCTTCCEEECCSCCCC
T ss_pred             HhcCCCccEEECCCCCCCHHHHHHHHHHHHhCCCccEEeCcccccCccccchhHHHHHHHHHHhhCCcccEEECCCCcCC
Confidence            344556666666666555443322    445566666666654222   11122       2245566666666666655


Q ss_pred             h----hHHHHhhcCCCccEEEccCCCCchHHHHHh----hCC---------CCCCEEecCCCCCChHHH----HHhhCCC
Q 012186          242 D----DGCEKFSKIGSLKVLNLGFNEITDECLVHL----KGL---------TNLESLNLDSCGIGDEGL----VNLTGLC  300 (469)
Q Consensus       242 ~----~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~----~~l---------~~L~~L~l~~~~~~~~~~----~~~~~~~  300 (469)
                      .    ..+..+..+++|+.|++++|.+....+..+    ..+         ++|++|++++|.++....    ..+..++
T Consensus       108 ~~~~~~l~~~l~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~l~~~~~~~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~  187 (386)
T 2ca6_A          108 PTAQEPLIDFLSKHTPLEHLYLHNNGLGPQAGAKIARALQELAVNKKAKNAPPLRSIICGRNRLENGSMKEWAKTFQSHR  187 (386)
T ss_dssp             TTTHHHHHHHHHHCTTCCEEECCSSCCHHHHHHHHHHHHHHHHHHHHHHTCCCCCEEECCSSCCTGGGHHHHHHHHHHCT
T ss_pred             HHHHHHHHHHHHhCCCCCEEECcCCCCCHHHHHHHHHHHHHHhhhhhcccCCCCcEEECCCCCCCcHHHHHHHHHHHhCC
Confidence            5    233445556666666666666543322222    222         566666666665542221    2344555


Q ss_pred             CCCEEeccCCCCChhh----HH-HhhCCCCCcEEecccCCCC----chHHHhhhCCCCCcEEEccCCCCCHHHH----HH
Q 012186          301 NLKCLELSDTQVGSSG----LR-HLSGLTNLESINLSFTGIS----DGSLRKLAGLSSLKSLNLDARQITDTGL----AA  367 (469)
Q Consensus       301 ~L~~L~l~~~~~~~~~----~~-~~~~~~~L~~L~l~~~~~~----~~~~~~~~~~~~L~~L~l~~~~~~~~~~----~~  367 (469)
                      +|++|++++|.+....    .. .+..+++|+.|++++|.++    ...+..+..+++|+.|++++|.++..+.    ..
T Consensus       188 ~L~~L~L~~n~l~~~g~~~l~~~~l~~~~~L~~L~Ls~n~l~~~g~~~l~~~l~~~~~L~~L~L~~n~i~~~~~~~l~~~  267 (386)
T 2ca6_A          188 LLHTVKMVQNGIRPEGIEHLLLEGLAYCQELKVLDLQDNTFTHLGSSALAIALKSWPNLRELGLNDCLLSARGAAAVVDA  267 (386)
T ss_dssp             TCCEEECCSSCCCHHHHHHHHHTTGGGCTTCCEEECCSSCCHHHHHHHHHHHGGGCTTCCEEECTTCCCCHHHHHHHHHH
T ss_pred             CcCEEECcCCCCCHhHHHHHHHHHhhcCCCccEEECcCCCCCcHHHHHHHHHHccCCCcCEEECCCCCCchhhHHHHHHH
Confidence            6666666666555321    11 3445566666666666654    2233444555666666666666655422    22


Q ss_pred             Hhc--CCCCCEeecCCCCCCh----hHHHHh-HcCCCCCeeeeCCCCCCHHH
Q 012186          368 LTS--LTGLTHLDLFGARITD----SGAAYL-RNFKNLRSLEICGGGLTDAG  412 (469)
Q Consensus       368 l~~--~~~L~~L~l~~~~~~~----~~~~~~-~~~~~L~~L~l~~~~~~~~~  412 (469)
                      +..  +++|++|++++|.+++    .++..+ .++++|+.|++++|.+++..
T Consensus       268 l~~~~~~~L~~L~L~~n~i~~~g~~~l~~~l~~~l~~L~~L~l~~N~l~~~~  319 (386)
T 2ca6_A          268 FSKLENIGLQTLRLQYNEIELDAVRTLKTVIDEKMPDLLFLELNGNRFSEED  319 (386)
T ss_dssp             HHTCSSCCCCEEECCSSCCBHHHHHHHHHHHHHHCTTCCEEECTTSBSCTTS
T ss_pred             HhhccCCCeEEEECcCCcCCHHHHHHHHHHHHhcCCCceEEEccCCcCCcch
Confidence            222  5666666666666665    244444 44566666666666665544

>2ast_B S-phase kinase-associated protein 2; SCF-substrate complex, LRR, cell cycle, protein turnover COM ligase-ligase inhibitor complex; HET: TPO; 2.30A {Homo sapiens} SCOP: a.158.1.1 c.10.1.3 PDB: 2ass_B 1fqv_A* 1fs2_A

Probab=99.90  E-value=1.4e-23  Score=193.28  Aligned_cols=237  Identities=18%  Similarity=0.185  Sum_probs=146.5

Q ss_pred             CCcHHHHHHHHHHHHhccCCCHHhHHhhccCceeEEecCCCCCCCHHHHHHHHhcCCCccEEEecCCCCChHhhHhhhcC
Q 012186            1 MLPRDISQQIFNELVYSRCLTEVSLEAFRDCALQDLCLGQYPGVNDKWMDVIASQGSSLLSVDLSGSDVTDSGLIHLKDC   80 (469)
Q Consensus         1 ~~~~e~~~~~~~~lv~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~l~~L~l~~~~~~~~~~~~~~~~   80 (469)
                      .+|+|+...+|..+-.      .+             +..+..++..|...... +..++.++++++.+.+   ..+.++
T Consensus        11 ~LP~eil~~If~~L~~------~d-------------~~~~~~vc~~W~~~~~~-~~~~~~l~l~~~~~~~---~~~~~~   67 (336)
T 2ast_B           11 SLPDELLLGIFSCLCL------PE-------------LLKVSGVCKRWYRLASD-ESLWQTLDLTGKNLHP---DVTGRL   67 (336)
T ss_dssp             SSCHHHHHHHHTTSCH------HH-------------HHHTTSSCHHHHHHHTC-STTSSEEECTTCBCCH---HHHHHH
T ss_pred             hCCHHHHHHHHHhCCH------HH-------------HHHHHHHHHHHHHHhcC-chhheeeccccccCCH---HHHHhh
Confidence            4799999988875421      11             11234567888876653 6679999999988873   455666


Q ss_pred             --CCCCEEecCCCcccChhHhHhhhCCCCCCEEeCCCCCcCcHHHHHHHhCCCCCCEEecccccccccccccccCCCCcc
Q 012186           81 --SNLQSLDFNFCIQISDGGLEHLRGLSNLTSLSFRRNNAITAQGMKAFAGLINLVKLDLERCTRIHGGLVNLKGLMKLE  158 (469)
Q Consensus        81 --~~L~~L~l~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~  158 (469)
                        ++++.|+++++ .+....+ .+..+++|++|++++|.+.....+..+..+++|++|++++|......+..+..+++|+
T Consensus        68 ~~~~l~~L~l~~n-~l~~~~~-~~~~~~~L~~L~L~~~~l~~~~~~~~~~~~~~L~~L~L~~~~l~~~~~~~l~~~~~L~  145 (336)
T 2ast_B           68 LSQGVIAFRCPRS-FMDQPLA-EHFSPFRVQHMDLSNSVIEVSTLHGILSQCSKLQNLSLEGLRLSDPIVNTLAKNSNLV  145 (336)
T ss_dssp             HHTTCSEEECTTC-EECSCCC-SCCCCBCCCEEECTTCEECHHHHHHHHTTBCCCSEEECTTCBCCHHHHHHHTTCTTCS
T ss_pred             hhccceEEEcCCc-cccccch-hhccCCCCCEEEccCCCcCHHHHHHHHhhCCCCCEEeCcCcccCHHHHHHHhcCCCCC
Confidence              89999999984 4555433 3567899999999999753344778888899999999988754434555667777777


Q ss_pred             EEEccCCCCCChh-hhhcccCCCCCCEEEeccc-ccChh-hhhhccCCC-CCCeeeccCC--CCc-hhhHHhhhcCCCCc
Q 012186          159 SLNIKWCNCITDS-DMKPLSGLTNLKSLQISCS-KVTDS-GIAYLKGLQ-KLTLLNLEGC--PVT-AACLDSLSALGSLF  231 (469)
Q Consensus       159 ~L~l~~~~~~~~~-~~~~~~~~~~L~~L~l~~~-~~~~~-~~~~l~~l~-~L~~L~l~~~--~~~-~~~~~~~~~~~~L~  231 (469)
                      +|++++|..+.+. .+..+..+++|++|++++| .+++. ....+..++ +|++|++++|  .+. ...+..+..+++|+
T Consensus       146 ~L~L~~~~~l~~~~l~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~l~~~L~~L~l~~~~~~~~~~~l~~~~~~~~~L~  225 (336)
T 2ast_B          146 RLNLSGCSGFSEFALQTLLSSCSRLDELNLSWCFDFTEKHVQVAVAHVSETITQLNLSGYRKNLQKSDLSTLVRRCPNLV  225 (336)
T ss_dssp             EEECTTCBSCCHHHHHHHHHHCTTCCEEECCCCTTCCHHHHHHHHHHSCTTCCEEECCSCGGGSCHHHHHHHHHHCTTCS
T ss_pred             EEECCCCCCCCHHHHHHHHhcCCCCCEEcCCCCCCcChHHHHHHHHhcccCCCEEEeCCCcccCCHHHHHHHHhhCCCCC
Confidence            7777776445542 2333455666666666666 55543 233344555 5555555555  233 22233344455555


Q ss_pred             EEECCCCC-CChhHHHHhhcCCCccEEEccCC
Q 012186          232 YLNLNRCQ-LSDDGCEKFSKIGSLKVLNLGFN  262 (469)
Q Consensus       232 ~L~l~~~~-~~~~~~~~~~~~~~L~~L~l~~~  262 (469)
                      +|++++|. +++..+..+..+++|+.|++++|
T Consensus       226 ~L~l~~~~~l~~~~~~~l~~l~~L~~L~l~~~  257 (336)
T 2ast_B          226 HLDLSDSVMLKNDCFQEFFQLNYLQHLSLSRC  257 (336)
T ss_dssp             EEECTTCTTCCGGGGGGGGGCTTCCEEECTTC
T ss_pred             EEeCCCCCcCCHHHHHHHhCCCCCCEeeCCCC
Confidence            55555544 33333334444444444444444

>2ast_B S-phase kinase-associated protein 2; SCF-substrate complex, LRR, cell cycle, protein turnover COM ligase-ligase inhibitor complex; HET: TPO; 2.30A {Homo sapiens} SCOP: a.158.1.1 c.10.1.3 PDB: 2ass_B 1fqv_A* 1fs2_A

Probab=99.90  E-value=1.5e-22  Score=186.23  Aligned_cols=227  Identities=19%  Similarity=0.218  Sum_probs=121.4

Q ss_pred             CCCcEEECCCCCCChhHHHHhhcCCCccEEEccCCCCchH-HHHHhhCCCCCCEEecCCCCCChHHHHHhhCCCCCCEEe
Q 012186          228 GSLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDE-CLVHLKGLTNLESLNLDSCGIGDEGLVNLTGLCNLKCLE  306 (469)
Q Consensus       228 ~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~-~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~  306 (469)
                      ++++.+++.++.+....+. +..+++|+.|++++|.+.+. .+..+..+++|++|++++|.+.+..+..++.+++|++|+
T Consensus        70 ~~l~~L~l~~n~l~~~~~~-~~~~~~L~~L~L~~~~l~~~~~~~~~~~~~~L~~L~L~~~~l~~~~~~~l~~~~~L~~L~  148 (336)
T 2ast_B           70 QGVIAFRCPRSFMDQPLAE-HFSPFRVQHMDLSNSVIEVSTLHGILSQCSKLQNLSLEGLRLSDPIVNTLAKNSNLVRLN  148 (336)
T ss_dssp             TTCSEEECTTCEECSCCCS-CCCCBCCCEEECTTCEECHHHHHHHHTTBCCCSEEECTTCBCCHHHHHHHTTCTTCSEEE
T ss_pred             ccceEEEcCCccccccchh-hccCCCCCEEEccCCCcCHHHHHHHHhhCCCCCEEeCcCcccCHHHHHHHhcCCCCCEEE
Confidence            4455555544444332221 23445555555555555433 444455555666666665555555555555556666666


Q ss_pred             ccCC-CCChh-hHHHhhCCCCCcEEecccC-CCCch-HHHhhhCCC-CCcEEEccCC--CCC-HHHHHHHhcCCCCCEee
Q 012186          307 LSDT-QVGSS-GLRHLSGLTNLESINLSFT-GISDG-SLRKLAGLS-SLKSLNLDAR--QIT-DTGLAALTSLTGLTHLD  378 (469)
Q Consensus       307 l~~~-~~~~~-~~~~~~~~~~L~~L~l~~~-~~~~~-~~~~~~~~~-~L~~L~l~~~--~~~-~~~~~~l~~~~~L~~L~  378 (469)
                      +++| .+... .+..+..+++|++|++++| .+++. .+..+..++ +|+.|++++|  .++ ...+..+..+++|++|+
T Consensus       149 L~~~~~l~~~~l~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~l~~~L~~L~l~~~~~~~~~~~l~~~~~~~~~L~~L~  228 (336)
T 2ast_B          149 LSGCSGFSEFALQTLLSSCSRLDELNLSWCFDFTEKHVQVAVAHVSETITQLNLSGYRKNLQKSDLSTLVRRCPNLVHLD  228 (336)
T ss_dssp             CTTCBSCCHHHHHHHHHHCTTCCEEECCCCTTCCHHHHHHHHHHSCTTCCEEECCSCGGGSCHHHHHHHHHHCTTCSEEE
T ss_pred             CCCCCCCCHHHHHHHHhcCCCCCEEcCCCCCCcChHHHHHHHHhcccCCCEEEeCCCcccCCHHHHHHHHhhCCCCCEEe
Confidence            6655 44432 2333455666666666666 55543 234455566 6666666665  444 22234445666666666


Q ss_pred             cCCCC-CChhHHHHhHcCCCCCeeeeCCC-CCCHHHHHHHhcCCCCCeeeccCCCCCChhHHHHHHhCcccccccccCCC
Q 012186          379 LFGAR-ITDSGAAYLRNFKNLRSLEICGG-GLTDAGVKHIKDLSSLTLLNLSQNCNLTDKTLELISGLTGLVSLNVSNSR  456 (469)
Q Consensus       379 l~~~~-~~~~~~~~~~~~~~L~~L~l~~~-~~~~~~~~~l~~~~~L~~L~l~~~~~l~~~~~~~l~~l~~L~~L~l~~~~  456 (469)
                      +++|. +++..+..+..+++|+.|++++| .+.......+..+++|++|++++|  ++......+.  .+++.|++++|+
T Consensus       229 l~~~~~l~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~l~~~~~L~~L~l~~~--i~~~~~~~l~--~~l~~L~l~~n~  304 (336)
T 2ast_B          229 LSDSVMLKNDCFQEFFQLNYLQHLSLSRCYDIIPETLLELGEIPTLKTLQVFGI--VPDGTLQLLK--EALPHLQINCSH  304 (336)
T ss_dssp             CTTCTTCCGGGGGGGGGCTTCCEEECTTCTTCCGGGGGGGGGCTTCCEEECTTS--SCTTCHHHHH--HHSTTSEESCCC
T ss_pred             CCCCCcCCHHHHHHHhCCCCCCEeeCCCCCCCCHHHHHHHhcCCCCCEEeccCc--cCHHHHHHHH--hhCcceEEeccc
Confidence            66666 55555556666666666666666 344433334556666666666666  3333322222  234455566666


Q ss_pred             CCH
Q 012186          457 ITS  459 (469)
Q Consensus       457 ~~~  459 (469)
                      ++.
T Consensus       305 l~~  307 (336)
T 2ast_B          305 FTT  307 (336)
T ss_dssp             SCC
T ss_pred             Ccc
Confidence            654

>2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like receptor, MD-2, LPS, leucine-rich repeat, glycoprotein, immune response; HET: NAG BMA FUL; 1.90A {Eptatretus burgeri}

Probab=99.90  E-value=1.9e-24  Score=196.01  Aligned_cols=249  Identities=23%  Similarity=0.244  Sum_probs=163.8

Q ss_pred             cEEEecCCCCChHhhHhhhcCCCCCEEecCCCcccChhHhHhhhCCCCCCEEeCCCCCcCcH-HHHHHHhCCCCCCEEec
Q 012186           60 LSVDLSGSDVTDSGLIHLKDCSNLQSLDFNFCIQISDGGLEHLRGLSNLTSLSFRRNNAITA-QGMKAFAGLINLVKLDL  138 (469)
Q Consensus        60 ~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~-~~~~~~~~l~~L~~L~l  138 (469)
                      +.++.+++.++. +|..+  .++|++|++++| .++......+.++++|++|++++|.+... ..+..+..+++|++|++
T Consensus        10 ~~l~c~~~~l~~-ip~~~--~~~l~~L~L~~n-~l~~i~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~L~~L~L   85 (306)
T 2z66_A           10 TEIRCNSKGLTS-VPTGI--PSSATRLELESN-KLQSLPHGVFDKLTQLTKLSLSSNGLSFKGCCSQSDFGTTSLKYLDL   85 (306)
T ss_dssp             TEEECCSSCCSS-CCSCC--CTTCCEEECCSS-CCCCCCTTTTTTCTTCSEEECCSSCCCEEEEEEHHHHSCSCCCEEEC
T ss_pred             CEEEcCCCCccc-CCCCC--CCCCCEEECCCC-ccCccCHhHhhccccCCEEECCCCccCcccCcccccccccccCEEEC
Confidence            467777766653 33322  367888888874 56655555677888888888888764211 11345567888888888


Q ss_pred             ccccccccccccccCCCCccEEEccCCCCCChhhhhcccCCCCCCEEEecccccChhhhhhccCCCCCCeeeccCCCCch
Q 012186          139 ERCTRIHGGLVNLKGLMKLESLNIKWCNCITDSDMKPLSGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTA  218 (469)
Q Consensus       139 ~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~  218 (469)
                      ++|. +...+..+..+++|++|+++++..........+..+++|++|++++|.+.......+..+++|++|++++|.+..
T Consensus        86 s~n~-i~~l~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~  164 (306)
T 2z66_A           86 SFNG-VITMSSNFLGLEQLEHLDFQHSNLKQMSEFSVFLSLRNLIYLDISHTHTRVAFNGIFNGLSSLEVLKMAGNSFQE  164 (306)
T ss_dssp             CSCS-EEEEEEEEETCTTCCEEECTTSEEESSTTTTTTTTCTTCCEEECTTSCCEECSTTTTTTCTTCCEEECTTCEEGG
T ss_pred             CCCc-cccChhhcCCCCCCCEEECCCCcccccccchhhhhccCCCEEECCCCcCCccchhhcccCcCCCEEECCCCcccc
Confidence            8864 444555677788888888887543222222456677888888888777776666667777788888888777654


Q ss_pred             -hhHHhhhcCCCCcEEECCCCCCChhHHHHhhcCCCccEEEccCCCCchHHHHHhhCCCCCCEEecCCCCCChHHHHHhh
Q 012186          219 -ACLDSLSALGSLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNLDSCGIGDEGLVNLT  297 (469)
Q Consensus       219 -~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~  297 (469)
                       ..+..+..+++|++|++++|.+....+..+..+++|+.|++++|.+.+..+..+..+++|+.|++++|.+....+..+.
T Consensus       165 ~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~  244 (306)
T 2z66_A          165 NFLPDIFTELRNLTFLDLSQCQLEQLSPTAFNSLSSLQVLNMSHNNFFSLDTFPYKCLNSLQVLDYSLNHIMTSKKQELQ  244 (306)
T ss_dssp             GEECSCCTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECTTSCCSBCCSGGGTTCTTCCEEECTTSCCCBCSSSSCC
T ss_pred             ccchhHHhhCcCCCEEECCCCCcCCcCHHHhcCCCCCCEEECCCCccCccChhhccCcccCCEeECCCCCCcccCHHHHH
Confidence             3455666777777777777777665556666677777777777766654444556666777777777766554444455


Q ss_pred             CCC-CCCEEeccCCCCC
Q 012186          298 GLC-NLKCLELSDTQVG  313 (469)
Q Consensus       298 ~~~-~L~~L~l~~~~~~  313 (469)
                      .++ +|+.|++++|++.
T Consensus       245 ~~~~~L~~L~L~~N~~~  261 (306)
T 2z66_A          245 HFPSSLAFLNLTQNDFA  261 (306)
T ss_dssp             CCCTTCCEEECTTCCEE
T ss_pred             hhhccCCEEEccCCCee
Confidence            553 6666666666543

>4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV}

Probab=99.89  E-value=3.6e-25  Score=201.99  Aligned_cols=235  Identities=22%  Similarity=0.224  Sum_probs=142.7

Q ss_pred             CCCCCeeeccCCCCchhhHHhhhcCCCCcEEECCCCCCChhHHHHhhcCCCccEEEccCCCCchHHHHHhhCCCCCCEEe
Q 012186          203 LQKLTLLNLEGCPVTAACLDSLSALGSLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLN  282 (469)
Q Consensus       203 l~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~  282 (469)
                      .++++.|+++++.+... +..+..+++|++|++++|.+. ..+..+..+++|+.|++++|.+. ..+..+..+++|+.|+
T Consensus        80 ~~~l~~L~L~~n~l~~l-p~~l~~l~~L~~L~L~~n~l~-~lp~~~~~l~~L~~L~Ls~n~l~-~lp~~l~~l~~L~~L~  156 (328)
T 4fcg_A           80 QPGRVALELRSVPLPQF-PDQAFRLSHLQHMTIDAAGLM-ELPDTMQQFAGLETLTLARNPLR-ALPASIASLNRLRELS  156 (328)
T ss_dssp             STTCCEEEEESSCCSSC-CSCGGGGTTCSEEEEESSCCC-CCCSCGGGGTTCSEEEEESCCCC-CCCGGGGGCTTCCEEE
T ss_pred             ccceeEEEccCCCchhc-ChhhhhCCCCCEEECCCCCcc-chhHHHhccCCCCEEECCCCccc-cCcHHHhcCcCCCEEE
Confidence            45566666666665533 444555666666666666655 34445556666666666666655 3344555566666666


Q ss_pred             cCCCCCChHHHHHhhCCCCCCEEeccCCCCChhhHHHhhCCCCCcEEecccCCCCchHHHhhhCCCCCcEEEccCCCCCH
Q 012186          283 LDSCGIGDEGLVNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISDGSLRKLAGLSSLKSLNLDARQITD  362 (469)
Q Consensus       283 l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~  362 (469)
                      +++|......+..+..      ..+.         ..+..+++|++|++++|.+. ..+..+..+++|+.|++++|.++.
T Consensus       157 L~~n~~~~~~p~~~~~------~~~~---------~~~~~l~~L~~L~L~~n~l~-~lp~~l~~l~~L~~L~L~~N~l~~  220 (328)
T 4fcg_A          157 IRACPELTELPEPLAS------TDAS---------GEHQGLVNLQSLRLEWTGIR-SLPASIANLQNLKSLKIRNSPLSA  220 (328)
T ss_dssp             EEEETTCCCCCSCSEE------EC-C---------CCEEESTTCCEEEEEEECCC-CCCGGGGGCTTCCEEEEESSCCCC
T ss_pred             CCCCCCccccChhHhh------ccch---------hhhccCCCCCEEECcCCCcC-cchHhhcCCCCCCEEEccCCCCCc
Confidence            6654332222211111      0000         01234667777777777665 334456667777777777777665


Q ss_pred             HHHHHHhcCCCCCEeecCCCCCChhHHHHhHcCCCCCeeeeCCCCCCHHHHHHHhcCCCCCeeeccCCCCCChhHHHHHH
Q 012186          363 TGLAALTSLTGLTHLDLFGARITDSGAAYLRNFKNLRSLEICGGGLTDAGVKHIKDLSSLTLLNLSQNCNLTDKTLELIS  442 (469)
Q Consensus       363 ~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~l~~~~~~~l~  442 (469)
                      . +..+..+++|++|++++|.+.+..|..+..+++|+.|++++|.+.+..|..+..+++|++|++++| .+.+..|+.+.
T Consensus       221 l-~~~l~~l~~L~~L~Ls~n~~~~~~p~~~~~l~~L~~L~L~~n~~~~~~p~~~~~l~~L~~L~L~~n-~~~~~iP~~l~  298 (328)
T 4fcg_A          221 L-GPAIHHLPKLEELDLRGCTALRNYPPIFGGRAPLKRLILKDCSNLLTLPLDIHRLTQLEKLDLRGC-VNLSRLPSLIA  298 (328)
T ss_dssp             C-CGGGGGCTTCCEEECTTCTTCCBCCCCTTCCCCCCEEECTTCTTCCBCCTTGGGCTTCCEEECTTC-TTCCCCCGGGG
T ss_pred             C-chhhccCCCCCEEECcCCcchhhhHHHhcCCCCCCEEECCCCCchhhcchhhhcCCCCCEEeCCCC-CchhhccHHHh
Confidence            4 234666777777777777777666666777777777777777776666666777777777777777 55555666677


Q ss_pred             hCcccccccccCCCCC
Q 012186          443 GLTGLVSLNVSNSRIT  458 (469)
Q Consensus       443 ~l~~L~~L~l~~~~~~  458 (469)
                      ++++|+.+++..+.+.
T Consensus       299 ~L~~L~~l~l~~~~~~  314 (328)
T 4fcg_A          299 QLPANCIILVPPHLQA  314 (328)
T ss_dssp             GSCTTCEEECCGGGSC
T ss_pred             hccCceEEeCCHHHHH
Confidence            7777777777665443

>3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae}

Probab=99.89  E-value=4.2e-25  Score=201.05  Aligned_cols=239  Identities=20%  Similarity=0.209  Sum_probs=135.3

Q ss_pred             CCCCCCEEEecccccChhhhhhccCCCCCCeeeccCCCCchhhHHhhhcCCCCcEEECCCCCCChhHHHHhhcCCCccEE
Q 012186          178 GLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACLDSLSALGSLFYLNLNRCQLSDDGCEKFSKIGSLKVL  257 (469)
Q Consensus       178 ~~~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L  257 (469)
                      .+++|++|++++|.++...+..+..+++|++|++++|.+....+  +..+++|++|++++|.+...     ...++|+.|
T Consensus        32 ~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~--~~~l~~L~~L~Ls~n~l~~l-----~~~~~L~~L  104 (317)
T 3o53_A           32 SAWNVKELDLSGNPLSQISAADLAPFTKLELLNLSSNVLYETLD--LESLSTLRTLDLNNNYVQEL-----LVGPSIETL  104 (317)
T ss_dssp             TGGGCSEEECTTSCCCCCCHHHHTTCTTCCEEECTTSCCEEEEE--ETTCTTCCEEECCSSEEEEE-----EECTTCCEE
T ss_pred             cCCCCCEEECcCCccCcCCHHHhhCCCcCCEEECCCCcCCcchh--hhhcCCCCEEECcCCccccc-----cCCCCcCEE
Confidence            33445555555554444444444455555555555554443222  44455555555555544321     123555555


Q ss_pred             EccCCCCchHHHHHhhCCCCCCEEecCCCCCChHHHHHhhCCCCCCEEeccCCCCChhhHHHh-hCCCCCcEEecccCCC
Q 012186          258 NLGFNEITDECLVHLKGLTNLESLNLDSCGIGDEGLVNLTGLCNLKCLELSDTQVGSSGLRHL-SGLTNLESINLSFTGI  336 (469)
Q Consensus       258 ~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~-~~~~~L~~L~l~~~~~  336 (469)
                      ++++|.+....   ...+++|+.|++++|.+....+..+..+++|+.|++++|.+....+..+ ..+++|++|++++|.+
T Consensus       105 ~l~~n~l~~~~---~~~~~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~l~~L~~L~L~~N~l  181 (317)
T 3o53_A          105 HAANNNISRVS---CSRGQGKKNIYLANNKITMLRDLDEGCRSRVQYLDLKLNEIDTVNFAELAASSDTLEHLNLQYNFI  181 (317)
T ss_dssp             ECCSSCCSEEE---ECCCSSCEEEECCSSCCCSGGGBCTGGGSSEEEEECTTSCCCEEEGGGGGGGTTTCCEEECTTSCC
T ss_pred             ECCCCccCCcC---ccccCCCCEEECCCCCCCCccchhhhccCCCCEEECCCCCCCcccHHHHhhccCcCCEEECCCCcC
Confidence            55555554322   1234556666666665554444445555666666666666555444433 3566666666666666


Q ss_pred             CchHHHhhhCCCCCcEEEccCCCCCHHHHHHHhcCCCCCEeecCCCCCChhHHHHhHcCCCCCeeeeCCCCCC-HHHHHH
Q 012186          337 SDGSLRKLAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLFGARITDSGAAYLRNFKNLRSLEICGGGLT-DAGVKH  415 (469)
Q Consensus       337 ~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~-~~~~~~  415 (469)
                      ....  ....+++|+.|++++|.++...+. +..+++|++|++++|.++. +|..+..+++|+.|++++|.+. +..+.+
T Consensus       182 ~~~~--~~~~l~~L~~L~Ls~N~l~~l~~~-~~~l~~L~~L~L~~N~l~~-l~~~~~~l~~L~~L~l~~N~~~~~~~~~~  257 (317)
T 3o53_A          182 YDVK--GQVVFAKLKTLDLSSNKLAFMGPE-FQSAAGVTWISLRNNKLVL-IEKALRFSQNLEHFDLRGNGFHCGTLRDF  257 (317)
T ss_dssp             CEEE--CCCCCTTCCEEECCSSCCCEECGG-GGGGTTCSEEECTTSCCCE-ECTTCCCCTTCCEEECTTCCCBHHHHHHH
T ss_pred             cccc--cccccccCCEEECCCCcCCcchhh-hcccCcccEEECcCCcccc-hhhHhhcCCCCCEEEccCCCccCcCHHHH
Confidence            5441  222366777777777777665333 6667777777777777775 3455666777777777777777 556666


Q ss_pred             HhcCCCCCeeeccCC
Q 012186          416 IKDLSSLTLLNLSQN  430 (469)
Q Consensus       416 l~~~~~L~~L~l~~~  430 (469)
                      +..+++|+.|++++|
T Consensus       258 ~~~~~~L~~l~l~~~  272 (317)
T 3o53_A          258 FSKNQRVQTVAKQTV  272 (317)
T ss_dssp             HHTCHHHHHHHHHHH
T ss_pred             HhccccceEEECCCc
Confidence            777777777777655

>1wwl_A Monocyte differentiation antigen CD14; LPS, immune system; HET: NAG; 2.50A {Mus musculus}

Probab=99.89  E-value=7.3e-26  Score=205.59  Aligned_cols=248  Identities=21%  Similarity=0.183  Sum_probs=169.8

Q ss_pred             CCCCCCeeeccCCCCchhhHHhhhcCCCCcEEECCCCCCCh-hHHHH-------hhcCCCccEEEccCCCCchHHHHHh-
Q 012186          202 GLQKLTLLNLEGCPVTAACLDSLSALGSLFYLNLNRCQLSD-DGCEK-------FSKIGSLKVLNLGFNEITDECLVHL-  272 (469)
Q Consensus       202 ~l~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~-~~~~~-------~~~~~~L~~L~l~~~~~~~~~~~~~-  272 (469)
                      ..++|+.++++++.+ . .|..+...  ++.|+++++.+.. ..+..       +..+++|++|++++|.+++..+..+ 
T Consensus        41 ~~~~L~~l~l~~n~l-~-~p~~~~~~--L~~L~L~~n~l~~~~~~~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~  116 (312)
T 1wwl_A           41 GGRSLEYLLKRVDTE-A-DLGQFTDI--IKSLSLKRLTVRAARIPSRILFGALRVLGISGLQELTLENLEVTGTAPPPLL  116 (312)
T ss_dssp             EEEECTTHHHHCCTT-C-CCHHHHHH--HHHCCCCEEEEEEEECBHHHHHHHHHHHTTSCCCEEEEEEEBCBSCCCCCSS
T ss_pred             cCCCceeEeeccccc-c-cHHHHHHH--HhhcccccccccCCCcCHHHHHHHHHhcCcCCccEEEccCCcccchhHHHHH
Confidence            344555555555555 2 22222222  5555555554421 11111       1256777777777777765444443 


Q ss_pred             -hCCCCCCEEecCCCCCChHHHHHhhCC-----CCCCEEeccCCCCChhhHHHhhCCCCCcEEecccCCCCch--HHHhh
Q 012186          273 -KGLTNLESLNLDSCGIGDEGLVNLTGL-----CNLKCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISDG--SLRKL  344 (469)
Q Consensus       273 -~~l~~L~~L~l~~~~~~~~~~~~~~~~-----~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~--~~~~~  344 (469)
                       ..+++|++|++++|.+... +..+..+     ++|++|++++|.+....+..++.+++|++|++++|.+...  .+..+
T Consensus       117 ~~~l~~L~~L~Ls~N~l~~~-~~~~~~l~~~~~~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~  195 (312)
T 1wwl_A          117 EATGPDLNILNLRNVSWATR-DAWLAELQQWLKPGLKVLSIAQAHSLNFSCEQVRVFPALSTLDLSDNPELGERGLISAL  195 (312)
T ss_dssp             SCCSCCCSEEEEESCBCSSS-SSHHHHHHTTCCTTCCEEEEESCSCCCCCTTTCCCCSSCCEEECCSCTTCHHHHHHHHS
T ss_pred             HhcCCCccEEEccCCCCcch-hHHHHHHHHhhcCCCcEEEeeCCCCccchHHHhccCCCCCEEECCCCCcCcchHHHHHH
Confidence             6677777777777766654 3333333     7888888888887776667777888888888888876654  23344


Q ss_pred             --hCCCCCcEEEccCCCCCH---HHHHHHhcCCCCCEeecCCCCCChhHH-HHhHcCCCCCeeeeCCCCCCHHHHHHHhc
Q 012186          345 --AGLSSLKSLNLDARQITD---TGLAALTSLTGLTHLDLFGARITDSGA-AYLRNFKNLRSLEICGGGLTDAGVKHIKD  418 (469)
Q Consensus       345 --~~~~~L~~L~l~~~~~~~---~~~~~l~~~~~L~~L~l~~~~~~~~~~-~~~~~~~~L~~L~l~~~~~~~~~~~~l~~  418 (469)
                        ..+++|+.|++++|.++.   .....+..+++|++|++++|.+++..+ ..+..+++|+.|++++|.++.. |..+. 
T Consensus       196 ~~~~l~~L~~L~L~~N~l~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~l~~L~~L~Ls~N~l~~i-p~~~~-  273 (312)
T 1wwl_A          196 CPLKFPTLQVLALRNAGMETPSGVCSALAAARVQLQGLDLSHNSLRDAAGAPSCDWPSQLNSLNLSFTGLKQV-PKGLP-  273 (312)
T ss_dssp             CTTSCTTCCEEECTTSCCCCHHHHHHHHHHTTCCCSEEECTTSCCCSSCCCSCCCCCTTCCEEECTTSCCSSC-CSSCC-
T ss_pred             HhccCCCCCEEECCCCcCcchHHHHHHHHhcCCCCCEEECCCCcCCcccchhhhhhcCCCCEEECCCCccChh-hhhcc-
Confidence              678899999999998883   333455678999999999999888653 3455678999999999999844 54443 


Q ss_pred             CCCCCeeeccCCCCCChhHHHHHHhCcccccccccCCCCCHH
Q 012186          419 LSSLTLLNLSQNCNLTDKTLELISGLTGLVSLNVSNSRITSA  460 (469)
Q Consensus       419 ~~~L~~L~l~~~~~l~~~~~~~l~~l~~L~~L~l~~~~~~~~  460 (469)
                       ++|++|++++| .++.. |. +..+++|+.|++++|++++.
T Consensus       274 -~~L~~L~Ls~N-~l~~~-p~-~~~l~~L~~L~L~~N~l~~~  311 (312)
T 1wwl_A          274 -AKLSVLDLSYN-RLDRN-PS-PDELPQVGNLSLKGNPFLDS  311 (312)
T ss_dssp             -SEEEEEECCSS-CCCSC-CC-TTTSCEEEEEECTTCTTTCC
T ss_pred             -CCceEEECCCC-CCCCC-hh-HhhCCCCCEEeccCCCCCCC
Confidence             78999999999 77776 33 78899999999999998864

>4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV}

Probab=99.89  E-value=8e-24  Score=193.10  Aligned_cols=223  Identities=20%  Similarity=0.201  Sum_probs=135.6

Q ss_pred             cCCCccEEEecCCCCChHhhHhhhcCCCCCEEecCCCcccChhHhHhhhCCCCCCEEeCCCCCcCcHHHHHHHhCCCCCC
Q 012186           55 QGSSLLSVDLSGSDVTDSGLIHLKDCSNLQSLDFNFCIQISDGGLEHLRGLSNLTSLSFRRNNAITAQGMKAFAGLINLV  134 (469)
Q Consensus        55 ~~~~l~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~l~~L~  134 (469)
                      ..+++++|+++++.++ .+|..+.++++|++|++++| .++ ..+..+.++++|++|++++|.+.  .+|..+..+++|+
T Consensus        79 ~~~~l~~L~L~~n~l~-~lp~~l~~l~~L~~L~L~~n-~l~-~lp~~~~~l~~L~~L~Ls~n~l~--~lp~~l~~l~~L~  153 (328)
T 4fcg_A           79 TQPGRVALELRSVPLP-QFPDQAFRLSHLQHMTIDAA-GLM-ELPDTMQQFAGLETLTLARNPLR--ALPASIASLNRLR  153 (328)
T ss_dssp             TSTTCCEEEEESSCCS-SCCSCGGGGTTCSEEEEESS-CCC-CCCSCGGGGTTCSEEEEESCCCC--CCCGGGGGCTTCC
T ss_pred             cccceeEEEccCCCch-hcChhhhhCCCCCEEECCCC-Ccc-chhHHHhccCCCCEEECCCCccc--cCcHHHhcCcCCC
Confidence            4578999999998887 56777888999999999884 565 55677888899999999988753  5577788888899


Q ss_pred             EEecccccccccccccccC---------CCCccEEEccCCCCCChhhhhcccCCCCCCEEEecccccChhhhhhccCCCC
Q 012186          135 KLDLERCTRIHGGLVNLKG---------LMKLESLNIKWCNCITDSDMKPLSGLTNLKSLQISCSKVTDSGIAYLKGLQK  205 (469)
Q Consensus       135 ~L~l~~~~~~~~~~~~l~~---------l~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~l~~  205 (469)
                      +|++++|......+..+..         +++|++|++++|. +. ..+..+..+++|++|++++|.+... +..+..+++
T Consensus       154 ~L~L~~n~~~~~~p~~~~~~~~~~~~~~l~~L~~L~L~~n~-l~-~lp~~l~~l~~L~~L~L~~N~l~~l-~~~l~~l~~  230 (328)
T 4fcg_A          154 ELSIRACPELTELPEPLASTDASGEHQGLVNLQSLRLEWTG-IR-SLPASIANLQNLKSLKIRNSPLSAL-GPAIHHLPK  230 (328)
T ss_dssp             EEEEEEETTCCCCCSCSEEEC-CCCEEESTTCCEEEEEEEC-CC-CCCGGGGGCTTCCEEEEESSCCCCC-CGGGGGCTT
T ss_pred             EEECCCCCCccccChhHhhccchhhhccCCCCCEEECcCCC-cC-cchHhhcCCCCCCEEEccCCCCCcC-chhhccCCC
Confidence            9988887666555544432         5555555555532 22 2333455555555555555555532 223455555


Q ss_pred             CCeeeccCCCCchhhHHhhhcCCCCcEEECCCCCCChhHHHHhhcCCCccEEEccCCCCchHHHHHhhCCCCCCEEecCC
Q 012186          206 LTLLNLEGCPVTAACLDSLSALGSLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNLDS  285 (469)
Q Consensus       206 L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~  285 (469)
                      |++|++++|.+....+..+..+++|++|++++|.+....+..+..+++|+.|++++|.+.+..|..+..+++++.+.+..
T Consensus       231 L~~L~Ls~n~~~~~~p~~~~~l~~L~~L~L~~n~~~~~~p~~~~~l~~L~~L~L~~n~~~~~iP~~l~~L~~L~~l~l~~  310 (328)
T 4fcg_A          231 LEELDLRGCTALRNYPPIFGGRAPLKRLILKDCSNLLTLPLDIHRLTQLEKLDLRGCVNLSRLPSLIAQLPANCIILVPP  310 (328)
T ss_dssp             CCEEECTTCTTCCBCCCCTTCCCCCCEEECTTCTTCCBCCTTGGGCTTCCEEECTTCTTCCCCCGGGGGSCTTCEEECCG
T ss_pred             CCEEECcCCcchhhhHHHhcCCCCCCEEECCCCCchhhcchhhhcCCCCCEEeCCCCCchhhccHHHhhccCceEEeCCH
Confidence            55555555544444444445555555555555544444444444455555555555444444444444555555554443

>3goz_A Leucine-rich repeat-containing protein; LEGL7, NESG, LGR148, structural genomics, PSI-2, protein structure initiative; 2.10A {Legionella pneumophila subsp}

Probab=99.89  E-value=3.6e-23  Score=191.93  Aligned_cols=251  Identities=15%  Similarity=0.194  Sum_probs=145.7

Q ss_pred             EEecccccChhhhhhccCCCCCCeeeccCCCCchhhH----HhhhcCC-CCcEEECCCCCCChhHHHHhhcC-----CCc
Q 012186          185 LQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACL----DSLSALG-SLFYLNLNRCQLSDDGCEKFSKI-----GSL  254 (469)
Q Consensus       185 L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~----~~~~~~~-~L~~L~l~~~~~~~~~~~~~~~~-----~~L  254 (469)
                      ++++.+.+++..+..+...++|++|++++|.+....+    ..+..++ +|++|++++|.+....+..+..+     ++|
T Consensus         3 ~~ls~n~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~~~l~~~l~~~~~~L   82 (362)
T 3goz_A            3 YKLTLHPGSNPVEEFTSIPHGVTSLDLSLNNLYSISTVELIQAFANTPASVTSLNLSGNSLGFKNSDELVQILAAIPANV   82 (362)
T ss_dssp             EECCCCTTCCHHHHHHTSCTTCCEEECTTSCGGGSCHHHHHHHHHTCCTTCCEEECCSSCGGGSCHHHHHHHHHTSCTTC
T ss_pred             cccccccchHHHHHHHhCCCCceEEEccCCCCChHHHHHHHHHHHhCCCceeEEECcCCCCCHHHHHHHHHHHhccCCCc
Confidence            4566677776655555666668888888887766554    5666677 78888887777766555545443     777


Q ss_pred             cEEEccCCCCchHHHH----HhhCC-CCCCEEecCCCCCChHHHHHh----hC-CCCCCEEeccCCCCChhhHH----Hh
Q 012186          255 KVLNLGFNEITDECLV----HLKGL-TNLESLNLDSCGIGDEGLVNL----TG-LCNLKCLELSDTQVGSSGLR----HL  320 (469)
Q Consensus       255 ~~L~l~~~~~~~~~~~----~~~~l-~~L~~L~l~~~~~~~~~~~~~----~~-~~~L~~L~l~~~~~~~~~~~----~~  320 (469)
                      +.|++++|.+++..+.    .+..+ ++|+.|++++|.++......+    .. .++|++|++++|.+......    .+
T Consensus        83 ~~L~Ls~n~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~~~l~~~l  162 (362)
T 3goz_A           83 TSLNLSGNFLSYKSSDELVKTLAAIPFTITVLDLGWNDFSSKSSSEFKQAFSNLPASITSLNLRGNDLGIKSSDELIQIL  162 (362)
T ss_dssp             CEEECCSSCGGGSCHHHHHHHHHTSCTTCCEEECCSSCGGGSCHHHHHHHHTTSCTTCCEEECTTSCGGGSCHHHHHHHH
T ss_pred             cEEECcCCcCChHHHHHHHHHHHhCCCCccEEECcCCcCCcHHHHHHHHHHHhCCCceeEEEccCCcCCHHHHHHHHHHH
Confidence            7777777776654333    23344 677777777776655443332    23 24777777777766643322    23


Q ss_pred             hCCC-CCcEEecccCCCCchHHHhh----hCC-CCCcEEEccCCCCCHHH----HHHHhc-CCCCCEeecCCCCCChhHH
Q 012186          321 SGLT-NLESINLSFTGISDGSLRKL----AGL-SSLKSLNLDARQITDTG----LAALTS-LTGLTHLDLFGARITDSGA  389 (469)
Q Consensus       321 ~~~~-~L~~L~l~~~~~~~~~~~~~----~~~-~~L~~L~l~~~~~~~~~----~~~l~~-~~~L~~L~l~~~~~~~~~~  389 (469)
                      ..++ +|++|++++|.+++..+..+    ..+ ++|+.|++++|.++..+    +..+.. .++|++|++++|.+++..+
T Consensus       163 ~~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~i~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~  242 (362)
T 3goz_A          163 AAIPANVNSLNLRGNNLASKNCAELAKFLASIPASVTSLDLSANLLGLKSYAELAYIFSSIPNHVVSLNLCLNCLHGPSL  242 (362)
T ss_dssp             HTSCTTCCEEECTTSCGGGSCHHHHHHHHHTSCTTCCEEECTTSCGGGSCHHHHHHHHHHSCTTCCEEECCSSCCCCCCH
T ss_pred             hcCCccccEeeecCCCCchhhHHHHHHHHHhCCCCCCEEECCCCCCChhHHHHHHHHHhcCCCCceEEECcCCCCCcHHH
Confidence            3444 67777777776655444333    334 36777777766666522    223333 3466666666666665443


Q ss_pred             HH----hHcCCCCCeeeeCCCC---CCHHHHH----HHhcCCCCCeeeccCCCCCChh
Q 012186          390 AY----LRNFKNLRSLEICGGG---LTDAGVK----HIKDLSSLTLLNLSQNCNLTDK  436 (469)
Q Consensus       390 ~~----~~~~~~L~~L~l~~~~---~~~~~~~----~l~~~~~L~~L~l~~~~~l~~~  436 (469)
                      ..    +..+++|+.|++++|.   ++.....    .+..+++|+.|++++| .+...
T Consensus       243 ~~l~~~~~~l~~L~~L~L~~n~l~~i~~~~~~~l~~~~~~l~~L~~LdL~~N-~l~~~  299 (362)
T 3goz_A          243 ENLKLLKDSLKHLQTVYLDYDIVKNMSKEQCKALGAAFPNIQKIILVDKNGK-EIHPS  299 (362)
T ss_dssp             HHHHHTTTTTTTCSEEEEEHHHHTTCCHHHHHHHHTTSTTCCEEEEECTTSC-BCCGG
T ss_pred             HHHHHHHhcCCCccEEEeccCCccccCHHHHHHHHHHhccCCceEEEecCCC-cCCCc
Confidence            22    2445666666666665   3322221    2234455666666666 44443

>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}

Probab=99.89  E-value=4.8e-24  Score=205.07  Aligned_cols=235  Identities=17%  Similarity=0.190  Sum_probs=128.2

Q ss_pred             CCCeeeccCCCCchhhHHhhhcCCCCcEEECCCCCCChhHHHHhhcCCCccEEEccCCCCchHHHHHhhCCCCCCEEecC
Q 012186          205 KLTLLNLEGCPVTAACLDSLSALGSLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNLD  284 (469)
Q Consensus       205 ~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~  284 (469)
                      +|++|++++|.+....+..+..+++|++|++++|.+....+  +..+++|+.|++++|.+++     +...++|+.|+++
T Consensus        35 ~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~--l~~l~~L~~L~Ls~N~l~~-----l~~~~~L~~L~L~  107 (487)
T 3oja_A           35 NVKELDLSGNPLSQISAADLAPFTKLELLNLSSNVLYETLD--LESLSTLRTLDLNNNYVQE-----LLVGPSIETLHAA  107 (487)
T ss_dssp             GCCEEECCSSCCCCCCGGGGTTCTTCCEEECTTSCCEEEEE--CTTCTTCCEEECCSSEEEE-----EEECTTCCEEECC
T ss_pred             CccEEEeeCCcCCCCCHHHHhCCCCCCEEEeeCCCCCCCcc--cccCCCCCEEEecCCcCCC-----CCCCCCcCEEECc
Confidence            34444444444444333344444444444444444433222  4444555555555554432     1122455555555


Q ss_pred             CCCCChHHHHHhhCCCCCCEEeccCCCCChhhHHHhhCCCCCcEEecccCCCCchHHHhhh-CCCCCcEEEccCCCCCHH
Q 012186          285 SCGIGDEGLVNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISDGSLRKLA-GLSSLKSLNLDARQITDT  363 (469)
Q Consensus       285 ~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~-~~~~L~~L~l~~~~~~~~  363 (469)
                      +|.+....+   ..+++|+.|++++|.+....+..++.+++|+.|++++|.+....+..+. .+++|+.|++++|.++..
T Consensus       108 ~N~l~~~~~---~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~l~~~l~~L~~L~Ls~N~l~~~  184 (487)
T 3oja_A          108 NNNISRVSC---SRGQGKKNIYLANNKITMLRDLDEGCRSRVQYLDLKLNEIDTVNFAELAASSDTLEHLNLQYNFIYDV  184 (487)
T ss_dssp             SSCCCCEEE---CCCSSCEEEECCSSCCCSGGGBCGGGGSSEEEEECTTSCCCEEEGGGGGGGTTTCCEEECTTSCCCEE
T ss_pred             CCcCCCCCc---cccCCCCEEECCCCCCCCCCchhhcCCCCCCEEECCCCCCCCcChHHHhhhCCcccEEecCCCccccc
Confidence            555443221   2345566666666665555444555666666666666666655555444 466666666666666654


Q ss_pred             HHHHHhcCCCCCEeecCCCCCChhHHHHhHcCCCCCeeeeCCCCCCHHHHHHHhcCCCCCeeeccCCCCCChhHHHHHHh
Q 012186          364 GLAALTSLTGLTHLDLFGARITDSGAAYLRNFKNLRSLEICGGGLTDAGVKHIKDLSSLTLLNLSQNCNLTDKTLELISG  443 (469)
Q Consensus       364 ~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~l~~~~~~~l~~  443 (469)
                      .  ....+++|+.|++++|.+++.++ .+..+++|+.|++++|.+++. |..+..+++|+.|++++|+......+..+..
T Consensus       185 ~--~~~~l~~L~~L~Ls~N~l~~~~~-~~~~l~~L~~L~Ls~N~l~~l-p~~l~~l~~L~~L~l~~N~l~c~~~~~~~~~  260 (487)
T 3oja_A          185 K--GQVVFAKLKTLDLSSNKLAFMGP-EFQSAAGVTWISLRNNKLVLI-EKALRFSQNLEHFDLRGNGFHCGTLRDFFSK  260 (487)
T ss_dssp             E--CCCCCTTCCEEECCSSCCCEECG-GGGGGTTCSEEECTTSCCCEE-CTTCCCCTTCCEEECTTCCBCHHHHHHHHTT
T ss_pred             c--ccccCCCCCEEECCCCCCCCCCH-hHcCCCCccEEEecCCcCccc-chhhccCCCCCEEEcCCCCCcCcchHHHHHh
Confidence            1  22246667777777776666433 356667777777777776653 4455666777777777773332455566666


Q ss_pred             Cccccccccc
Q 012186          444 LTGLVSLNVS  453 (469)
Q Consensus       444 l~~L~~L~l~  453 (469)
                      ++.|+.++++
T Consensus       261 l~~L~~l~~~  270 (487)
T 3oja_A          261 NQRVQTVAKQ  270 (487)
T ss_dssp             CHHHHHHHHH
T ss_pred             CCCCcEEecc
Confidence            6666666663

>3goz_A Leucine-rich repeat-containing protein; LEGL7, NESG, LGR148, structural genomics, PSI-2, protein structure initiative; 2.10A {Legionella pneumophila subsp}

Probab=99.87  E-value=1.8e-22  Score=187.24  Aligned_cols=251  Identities=20%  Similarity=0.219  Sum_probs=152.5

Q ss_pred             EccCCCCCChhhhhcccCCCCCCEEEecccccChhhh----hhccCCC-CCCeeeccCCCCchhhHHhhhcC-----CCC
Q 012186          161 NIKWCNCITDSDMKPLSGLTNLKSLQISCSKVTDSGI----AYLKGLQ-KLTLLNLEGCPVTAACLDSLSAL-----GSL  230 (469)
Q Consensus       161 ~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~----~~l~~l~-~L~~L~l~~~~~~~~~~~~~~~~-----~~L  230 (469)
                      .+++ +.+....+..+...++|++|++++|.+++...    ..+..++ +|++|++++|.+....+..+..+     ++|
T Consensus         4 ~ls~-n~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~~~l~~~l~~~~~~L   82 (362)
T 3goz_A            4 KLTL-HPGSNPVEEFTSIPHGVTSLDLSLNNLYSISTVELIQAFANTPASVTSLNLSGNSLGFKNSDELVQILAAIPANV   82 (362)
T ss_dssp             ECCC-CTTCCHHHHHHTSCTTCCEEECTTSCGGGSCHHHHHHHHHTCCTTCCEEECCSSCGGGSCHHHHHHHHHTSCTTC
T ss_pred             cccc-ccchHHHHHHHhCCCCceEEEccCCCCChHHHHHHHHHHHhCCCceeEEECcCCCCCHHHHHHHHHHHhccCCCc
Confidence            4444 23444444444555557777777777766555    5566666 77777777777766545444443     777


Q ss_pred             cEEECCCCCCChhHHHH----hhcC-CCccEEEccCCCCchHHHHH----hhC-CCCCCEEecCCCCCChH----HHHHh
Q 012186          231 FYLNLNRCQLSDDGCEK----FSKI-GSLKVLNLGFNEITDECLVH----LKG-LTNLESLNLDSCGIGDE----GLVNL  296 (469)
Q Consensus       231 ~~L~l~~~~~~~~~~~~----~~~~-~~L~~L~l~~~~~~~~~~~~----~~~-l~~L~~L~l~~~~~~~~----~~~~~  296 (469)
                      ++|++++|.+....+..    +..+ ++|+.|++++|.+++.....    +.. .++|++|++++|.++..    ....+
T Consensus        83 ~~L~Ls~n~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~~~l~~~l  162 (362)
T 3goz_A           83 TSLNLSGNFLSYKSSDELVKTLAAIPFTITVLDLGWNDFSSKSSSEFKQAFSNLPASITSLNLRGNDLGIKSSDELIQIL  162 (362)
T ss_dssp             CEEECCSSCGGGSCHHHHHHHHHTSCTTCCEEECCSSCGGGSCHHHHHHHHTTSCTTCCEEECTTSCGGGSCHHHHHHHH
T ss_pred             cEEECcCCcCChHHHHHHHHHHHhCCCCccEEECcCCcCCcHHHHHHHHHHHhCCCceeEEEccCCcCCHHHHHHHHHHH
Confidence            77777777766544443    3333 67777777777776544333    333 34777777777766632    23334


Q ss_pred             hCCC-CCCEEeccCCCCChhhHHHh----hCC-CCCcEEecccCCCCchHH----HhhhC-CCCCcEEEccCCCCCHHHH
Q 012186          297 TGLC-NLKCLELSDTQVGSSGLRHL----SGL-TNLESINLSFTGISDGSL----RKLAG-LSSLKSLNLDARQITDTGL  365 (469)
Q Consensus       297 ~~~~-~L~~L~l~~~~~~~~~~~~~----~~~-~~L~~L~l~~~~~~~~~~----~~~~~-~~~L~~L~l~~~~~~~~~~  365 (469)
                      ..++ +|++|++++|.+....+..+    ..+ ++|+.|++++|.+.+...    ..+.. .++|+.|++++|.++..+.
T Consensus       163 ~~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~i~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~  242 (362)
T 3goz_A          163 AAIPANVNSLNLRGNNLASKNCAELAKFLASIPASVTSLDLSANLLGLKSYAELAYIFSSIPNHVVSLNLCLNCLHGPSL  242 (362)
T ss_dssp             HTSCTTCCEEECTTSCGGGSCHHHHHHHHHTSCTTCCEEECTTSCGGGSCHHHHHHHHHHSCTTCCEEECCSSCCCCCCH
T ss_pred             hcCCccccEeeecCCCCchhhHHHHHHHHHhCCCCCCEEECCCCCCChhHHHHHHHHHhcCCCCceEEECcCCCCCcHHH
Confidence            4554 77777777777665554333    344 477777777777766332    23333 3577777777777776444


Q ss_pred             HH----HhcCCCCCEeecCCCCCC---hhH----HHHhHcCCCCCeeeeCCCCCCHHH
Q 012186          366 AA----LTSLTGLTHLDLFGARIT---DSG----AAYLRNFKNLRSLEICGGGLTDAG  412 (469)
Q Consensus       366 ~~----l~~~~~L~~L~l~~~~~~---~~~----~~~~~~~~~L~~L~l~~~~~~~~~  412 (469)
                      ..    +..+++|++|++++|.+.   ...    +..+..+++|+.|++++|.+....
T Consensus       243 ~~l~~~~~~l~~L~~L~L~~n~l~~i~~~~~~~l~~~~~~l~~L~~LdL~~N~l~~~~  300 (362)
T 3goz_A          243 ENLKLLKDSLKHLQTVYLDYDIVKNMSKEQCKALGAAFPNIQKIILVDKNGKEIHPSH  300 (362)
T ss_dssp             HHHHHTTTTTTTCSEEEEEHHHHTTCCHHHHHHHHTTSTTCCEEEEECTTSCBCCGGG
T ss_pred             HHHHHHHhcCCCccEEEeccCCccccCHHHHHHHHHHhccCCceEEEecCCCcCCCcc
Confidence            32    245677777777777633   221    123345666777777777776653

>3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium}

Probab=99.87  E-value=8.4e-22  Score=193.23  Aligned_cols=270  Identities=21%  Similarity=0.121  Sum_probs=213.2

Q ss_pred             CCCCEEecccccccccccccccCCCCccEEEccCCCCCChhhhhcccCCCCCCEEEecccccChhhhhhccCCCCCCeee
Q 012186          131 INLVKLDLERCTRIHGGLVNLKGLMKLESLNIKWCNCITDSDMKPLSGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLN  210 (469)
Q Consensus       131 ~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~  210 (469)
                      .++++|+++++. +...+..+.  ++|++|++++|. +.... .   .+++|++|++++|.++..+.    .+++|++|+
T Consensus        40 ~~l~~L~ls~n~-L~~lp~~l~--~~L~~L~L~~N~-l~~lp-~---~l~~L~~L~Ls~N~l~~lp~----~l~~L~~L~  107 (622)
T 3g06_A           40 NGNAVLNVGESG-LTTLPDCLP--AHITTLVIPDNN-LTSLP-A---LPPELRTLEVSGNQLTSLPV----LPPGLLELS  107 (622)
T ss_dssp             HCCCEEECCSSC-CSCCCSCCC--TTCSEEEECSCC-CSCCC-C---CCTTCCEEEECSCCCSCCCC----CCTTCCEEE
T ss_pred             CCCcEEEecCCC-cCccChhhC--CCCcEEEecCCC-CCCCC-C---cCCCCCEEEcCCCcCCcCCC----CCCCCCEEE
Confidence            469999999974 445555454  899999999965 44322 2   57899999999999886433    779999999


Q ss_pred             ccCCCCchhhHHhhhcCCCCcEEECCCCCCChhHHHHhhcCCCccEEEccCCCCchHHHHHhhCCCCCCEEecCCCCCCh
Q 012186          211 LEGCPVTAACLDSLSALGSLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNLDSCGIGD  290 (469)
Q Consensus       211 l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~  290 (469)
                      +++|.+.....    .+++|+.|++++|.+.....    .+++|+.|++++|.++.. +   ..+++|+.|++++|.+..
T Consensus       108 Ls~N~l~~l~~----~l~~L~~L~L~~N~l~~lp~----~l~~L~~L~Ls~N~l~~l-~---~~~~~L~~L~L~~N~l~~  175 (622)
T 3g06_A          108 IFSNPLTHLPA----LPSGLCKLWIFGNQLTSLPV----LPPGLQELSVSDNQLASL-P---ALPSELCKLWAYNNQLTS  175 (622)
T ss_dssp             ECSCCCCCCCC----CCTTCCEEECCSSCCSCCCC----CCTTCCEEECCSSCCSCC-C---CCCTTCCEEECCSSCCSC
T ss_pred             CcCCcCCCCCC----CCCCcCEEECCCCCCCcCCC----CCCCCCEEECcCCcCCCc-C---CccCCCCEEECCCCCCCC
Confidence            99998877432    57899999999998876322    358999999999988752 1   245789999999998876


Q ss_pred             HHHHHhhCCCCCCEEeccCCCCChhhHHHhhCCCCCcEEecccCCCCchHHHhhhCCCCCcEEEccCCCCCHHHHHHHhc
Q 012186          291 EGLVNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISDGSLRKLAGLSSLKSLNLDARQITDTGLAALTS  370 (469)
Q Consensus       291 ~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~  370 (469)
                      ..    ..+++|+.|++++|.+....    ..+++|+.|.+++|.+....    ..+++|+.|++++|.++..+    ..
T Consensus       176 l~----~~~~~L~~L~Ls~N~l~~l~----~~~~~L~~L~L~~N~l~~l~----~~~~~L~~L~Ls~N~L~~lp----~~  239 (622)
T 3g06_A          176 LP----MLPSGLQELSVSDNQLASLP----TLPSELYKLWAYNNRLTSLP----ALPSGLKELIVSGNRLTSLP----VL  239 (622)
T ss_dssp             CC----CCCTTCCEEECCSSCCSCCC----CCCTTCCEEECCSSCCSSCC----CCCTTCCEEECCSSCCSCCC----CC
T ss_pred             Cc----ccCCCCcEEECCCCCCCCCC----CccchhhEEECcCCcccccC----CCCCCCCEEEccCCccCcCC----CC
Confidence            33    45789999999999877532    24589999999999887533    23588999999999998753    56


Q ss_pred             CCCCCEeecCCCCCChhHHHHhHcCCCCCeeeeCCCCCCHHHHHHHhcCCCCCeeeccCCCCCChhHHHHHHhCcc
Q 012186          371 LTGLTHLDLFGARITDSGAAYLRNFKNLRSLEICGGGLTDAGVKHIKDLSSLTLLNLSQNCNLTDKTLELISGLTG  446 (469)
Q Consensus       371 ~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~l~~~~~~~l~~l~~  446 (469)
                      +++|+.|++++|.++....    .+++|+.|++++|.++.. |..+..+++|+.|++++| .+.+..+..+..+++
T Consensus       240 l~~L~~L~Ls~N~L~~lp~----~~~~L~~L~Ls~N~L~~l-p~~l~~l~~L~~L~L~~N-~l~~~~~~~l~~L~~  309 (622)
T 3g06_A          240 PSELKELMVSGNRLTSLPM----LPSGLLSLSVYRNQLTRL-PESLIHLSSETTVNLEGN-PLSERTLQALREITS  309 (622)
T ss_dssp             CTTCCEEECCSSCCSCCCC----CCTTCCEEECCSSCCCSC-CGGGGGSCTTCEEECCSC-CCCHHHHHHHHHHHH
T ss_pred             CCcCcEEECCCCCCCcCCc----ccccCcEEeCCCCCCCcC-CHHHhhccccCEEEecCC-CCCCcCHHHHHhccc
Confidence            7899999999999886433    578999999999999955 677889999999999999 788888887776543

>3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium}

Probab=99.87  E-value=2.1e-21  Score=190.43  Aligned_cols=268  Identities=15%  Similarity=0.079  Sum_probs=213.4

Q ss_pred             CCCCEEeCCCCCcCcHHHHHHHhCCCCCCEEecccccccccccccccCCCCccEEEccCCCCCChhhhhcccCCCCCCEE
Q 012186          106 SNLTSLSFRRNNAITAQGMKAFAGLINLVKLDLERCTRIHGGLVNLKGLMKLESLNIKWCNCITDSDMKPLSGLTNLKSL  185 (469)
Q Consensus       106 ~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L  185 (469)
                      .++++|+++++.+.  .+|..+.  ++|++|++++|. +...+.   .+++|++|++++|. +.... .   .+++|++|
T Consensus        40 ~~l~~L~ls~n~L~--~lp~~l~--~~L~~L~L~~N~-l~~lp~---~l~~L~~L~Ls~N~-l~~lp-~---~l~~L~~L  106 (622)
T 3g06_A           40 NGNAVLNVGESGLT--TLPDCLP--AHITTLVIPDNN-LTSLPA---LPPELRTLEVSGNQ-LTSLP-V---LPPGLLEL  106 (622)
T ss_dssp             HCCCEEECCSSCCS--CCCSCCC--TTCSEEEECSCC-CSCCCC---CCTTCCEEEECSCC-CSCCC-C---CCTTCCEE
T ss_pred             CCCcEEEecCCCcC--ccChhhC--CCCcEEEecCCC-CCCCCC---cCCCCCEEEcCCCc-CCcCC-C---CCCCCCEE
Confidence            46999999998752  4454443  799999999984 444443   67999999999965 44322 2   67999999


Q ss_pred             EecccccChhhhhhccCCCCCCeeeccCCCCchhhHHhhhcCCCCcEEECCCCCCChhHHHHhhcCCCccEEEccCCCCc
Q 012186          186 QISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACLDSLSALGSLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEIT  265 (469)
Q Consensus       186 ~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~  265 (469)
                      ++++|.++..+.    .+++|++|++++|.+.... .   .+++|++|++++|.+....    ..+++|+.|++++|.++
T Consensus       107 ~Ls~N~l~~l~~----~l~~L~~L~L~~N~l~~lp-~---~l~~L~~L~Ls~N~l~~l~----~~~~~L~~L~L~~N~l~  174 (622)
T 3g06_A          107 SIFSNPLTHLPA----LPSGLCKLWIFGNQLTSLP-V---LPPGLQELSVSDNQLASLP----ALPSELCKLWAYNNQLT  174 (622)
T ss_dssp             EECSCCCCCCCC----CCTTCCEEECCSSCCSCCC-C---CCTTCCEEECCSSCCSCCC----CCCTTCCEEECCSSCCS
T ss_pred             ECcCCcCCCCCC----CCCCcCEEECCCCCCCcCC-C---CCCCCCEEECcCCcCCCcC----CccCCCCEEECCCCCCC
Confidence            999998886433    6789999999999887642 2   3589999999999887532    24678999999999988


Q ss_pred             hHHHHHhhCCCCCCEEecCCCCCChHHHHHhhCCCCCCEEeccCCCCChhhHHHhhCCCCCcEEecccCCCCchHHHhhh
Q 012186          266 DECLVHLKGLTNLESLNLDSCGIGDEGLVNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISDGSLRKLA  345 (469)
Q Consensus       266 ~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~  345 (469)
                      .. +   ..+++|+.|++++|.+....    ..+++|+.|++.+|.+....    ..+++|+.|++++|.+....    .
T Consensus       175 ~l-~---~~~~~L~~L~Ls~N~l~~l~----~~~~~L~~L~L~~N~l~~l~----~~~~~L~~L~Ls~N~L~~lp----~  238 (622)
T 3g06_A          175 SL-P---MLPSGLQELSVSDNQLASLP----TLPSELYKLWAYNNRLTSLP----ALPSGLKELIVSGNRLTSLP----V  238 (622)
T ss_dssp             CC-C---CCCTTCCEEECCSSCCSCCC----CCCTTCCEEECCSSCCSSCC----CCCTTCCEEECCSSCCSCCC----C
T ss_pred             CC-c---ccCCCCcEEECCCCCCCCCC----CccchhhEEECcCCcccccC----CCCCCCCEEEccCCccCcCC----C
Confidence            63 2   55789999999999886522    23579999999999877543    24689999999999887643    4


Q ss_pred             CCCCCcEEEccCCCCCHHHHHHHhcCCCCCEeecCCCCCChhHHHHhHcCCCCCeeeeCCCCCCHHHHHHHhcC
Q 012186          346 GLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLFGARITDSGAAYLRNFKNLRSLEICGGGLTDAGVKHIKDL  419 (469)
Q Consensus       346 ~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~  419 (469)
                      .+++|+.|++++|.++..+.    .+++|+.|++++|.++. +|..+..+++|+.|++++|.+++..|..+..+
T Consensus       239 ~l~~L~~L~Ls~N~L~~lp~----~~~~L~~L~Ls~N~L~~-lp~~l~~l~~L~~L~L~~N~l~~~~~~~l~~L  307 (622)
T 3g06_A          239 LPSELKELMVSGNRLTSLPM----LPSGLLSLSVYRNQLTR-LPESLIHLSSETTVNLEGNPLSERTLQALREI  307 (622)
T ss_dssp             CCTTCCEEECCSSCCSCCCC----CCTTCCEEECCSSCCCS-CCGGGGGSCTTCEEECCSCCCCHHHHHHHHHH
T ss_pred             CCCcCcEEECCCCCCCcCCc----ccccCcEEeCCCCCCCc-CCHHHhhccccCEEEecCCCCCCcCHHHHHhc
Confidence            56899999999999987533    67899999999999995 47789999999999999999999988877543

>1wwl_A Monocyte differentiation antigen CD14; LPS, immune system; HET: NAG; 2.50A {Mus musculus}

Probab=99.87  E-value=1e-23  Score=191.47  Aligned_cols=253  Identities=21%  Similarity=0.252  Sum_probs=111.2

Q ss_pred             hhCCCCCCEEeCCCCCcCcHHHHHHHhCCCCCCEEeccccccccc-cccccc-------CCCCccEEEccCCCCCChhhh
Q 012186          102 LRGLSNLTSLSFRRNNAITAQGMKAFAGLINLVKLDLERCTRIHG-GLVNLK-------GLMKLESLNIKWCNCITDSDM  173 (469)
Q Consensus       102 l~~~~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~-~~~~l~-------~l~~L~~L~l~~~~~~~~~~~  173 (469)
                      ++..++|++|+++++.+   ..|..+...  |++|+++++..... .+..+.       .+++|++|+++++. +.+..+
T Consensus        39 ~~~~~~L~~l~l~~n~l---~~p~~~~~~--L~~L~L~~n~l~~~~~~~~~~~~~~~~~~l~~L~~L~L~~n~-l~~~~~  112 (312)
T 1wwl_A           39 YGGGRSLEYLLKRVDTE---ADLGQFTDI--IKSLSLKRLTVRAARIPSRILFGALRVLGISGLQELTLENLE-VTGTAP  112 (312)
T ss_dssp             EEEEEECTTHHHHCCTT---CCCHHHHHH--HHHCCCCEEEEEEEECBHHHHHHHHHHHTTSCCCEEEEEEEB-CBSCCC
T ss_pred             EccCCCceeEeeccccc---ccHHHHHHH--HhhcccccccccCCCcCHHHHHHHHHhcCcCCccEEEccCCc-ccchhH
Confidence            34556777777777764   334434332  77777776543221 111111       35555555555532 222222


Q ss_pred             hcc--cCCCCCCEEEecccccChhhhhhccCCCCCCeeeccCCCCchhhHHhhhcCCCCcEEECCCCCCChhHHHHhhcC
Q 012186          174 KPL--SGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACLDSLSALGSLFYLNLNRCQLSDDGCEKFSKI  251 (469)
Q Consensus       174 ~~~--~~~~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~  251 (469)
                      ..+  ..+++|++|++++|.+++. +..+..+                   .....++|++|++++|.+....+..+..+
T Consensus       113 ~~~~~~~l~~L~~L~Ls~N~l~~~-~~~~~~l-------------------~~~~~~~L~~L~L~~N~l~~~~~~~~~~l  172 (312)
T 1wwl_A          113 PPLLEATGPDLNILNLRNVSWATR-DAWLAEL-------------------QQWLKPGLKVLSIAQAHSLNFSCEQVRVF  172 (312)
T ss_dssp             CCSSSCCSCCCSEEEEESCBCSSS-SSHHHHH-------------------HTTCCTTCCEEEEESCSCCCCCTTTCCCC
T ss_pred             HHHHHhcCCCccEEEccCCCCcch-hHHHHHH-------------------HHhhcCCCcEEEeeCCCCccchHHHhccC
Confidence            222  4445555555555544433 2222222                   00001444444444444444333444444


Q ss_pred             CCccEEEccCCCCchH--HHHHh--hCCCCCCEEecCCCCCCh---HHHHHhhCCCCCCEEeccCCCCChhhH-HHhhCC
Q 012186          252 GSLKVLNLGFNEITDE--CLVHL--KGLTNLESLNLDSCGIGD---EGLVNLTGLCNLKCLELSDTQVGSSGL-RHLSGL  323 (469)
Q Consensus       252 ~~L~~L~l~~~~~~~~--~~~~~--~~l~~L~~L~l~~~~~~~---~~~~~~~~~~~L~~L~l~~~~~~~~~~-~~~~~~  323 (469)
                      ++|+.|++++|.+.+.  .+..+  ..+++|+.|++++|.+..   .....+..+++|+.|++++|.+....+ ..+..+
T Consensus       173 ~~L~~L~Ls~N~l~~~~~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~l  252 (312)
T 1wwl_A          173 PALSTLDLSDNPELGERGLISALCPLKFPTLQVLALRNAGMETPSGVCSALAAARVQLQGLDLSHNSLRDAAGAPSCDWP  252 (312)
T ss_dssp             SSCCEEECCSCTTCHHHHHHHHSCTTSCTTCCEEECTTSCCCCHHHHHHHHHHTTCCCSEEECTTSCCCSSCCCSCCCCC
T ss_pred             CCCCEEECCCCCcCcchHHHHHHHhccCCCCCEEECCCCcCcchHHHHHHHHhcCCCCCEEECCCCcCCcccchhhhhhc
Confidence            5555555555544332  12222  445555555555555442   111222344555555555554443221 122334


Q ss_pred             CCCcEEecccCCCCchHHHhhhCCCCCcEEEccCCCCCHHHHHHHhcCCCCCEeecCCCCCC
Q 012186          324 TNLESINLSFTGISDGSLRKLAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLFGARIT  385 (469)
Q Consensus       324 ~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~  385 (469)
                      ++|+.|++++|.++. .+..+.  ++|+.|++++|+++.. +. +..+++|++|++++|+++
T Consensus       253 ~~L~~L~Ls~N~l~~-ip~~~~--~~L~~L~Ls~N~l~~~-p~-~~~l~~L~~L~L~~N~l~  309 (312)
T 1wwl_A          253 SQLNSLNLSFTGLKQ-VPKGLP--AKLSVLDLSYNRLDRN-PS-PDELPQVGNLSLKGNPFL  309 (312)
T ss_dssp             TTCCEEECTTSCCSS-CCSSCC--SEEEEEECCSSCCCSC-CC-TTTSCEEEEEECTTCTTT
T ss_pred             CCCCEEECCCCccCh-hhhhcc--CCceEEECCCCCCCCC-hh-HhhCCCCCEEeccCCCCC
Confidence            555555555554442 122221  4455555555555443 11 444455555555555444

>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}

Probab=99.87  E-value=3.3e-23  Score=199.28  Aligned_cols=236  Identities=17%  Similarity=0.156  Sum_probs=127.4

Q ss_pred             CCCCccEEEccCCCCCChhhhhcccCCCCCCEEEecccccChhhhhhccCCCCCCeeeccCCCCchhhHHhhhcCCCCcE
Q 012186          153 GLMKLESLNIKWCNCITDSDMKPLSGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACLDSLSALGSLFY  232 (469)
Q Consensus       153 ~l~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~L~~  232 (469)
                      .+++|++|+++++ .+....+..+..+++|++|++++|.+++..+  +..+++|++|++++|.+...     ...++|+.
T Consensus        32 ~~~~L~~L~Ls~n-~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~--l~~l~~L~~L~Ls~N~l~~l-----~~~~~L~~  103 (487)
T 3oja_A           32 SAWNVKELDLSGN-PLSQISAADLAPFTKLELLNLSSNVLYETLD--LESLSTLRTLDLNNNYVQEL-----LVGPSIET  103 (487)
T ss_dssp             TGGGCCEEECCSS-CCCCCCGGGGTTCTTCCEEECTTSCCEEEEE--CTTCTTCCEEECCSSEEEEE-----EECTTCCE
T ss_pred             cCCCccEEEeeCC-cCCCCCHHHHhCCCCCCEEEeeCCCCCCCcc--cccCCCCCEEEecCCcCCCC-----CCCCCcCE
Confidence            3446777777764 3444455566677777777777776654332  66667777777777665542     22366666


Q ss_pred             EECCCCCCChhHHHHhhcCCCccEEEccCCCCchHHHHHhhCCCCCCEEecCCCCCChHHHHHhh-CCCCCCEEeccCCC
Q 012186          233 LNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNLDSCGIGDEGLVNLT-GLCNLKCLELSDTQ  311 (469)
Q Consensus       233 L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~-~~~~L~~L~l~~~~  311 (469)
                      |++++|.+....+   ..+++|+.|++++|.+++..+..+..+++|+.|++++|.+....+..+. .+++|+.|++++|.
T Consensus       104 L~L~~N~l~~~~~---~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~l~~~l~~L~~L~Ls~N~  180 (487)
T 3oja_A          104 LHAANNNISRVSC---SRGQGKKNIYLANNKITMLRDLDEGCRSRVQYLDLKLNEIDTVNFAELAASSDTLEHLNLQYNF  180 (487)
T ss_dssp             EECCSSCCCCEEE---CCCSSCEEEECCSSCCCSGGGBCGGGGSSEEEEECTTSCCCEEEGGGGGGGTTTCCEEECTTSC
T ss_pred             EECcCCcCCCCCc---cccCCCCEEECCCCCCCCCCchhhcCCCCCCEEECCCCCCCCcChHHHhhhCCcccEEecCCCc
Confidence            6666666655332   2345666666666666554444555556666666666655544343443 45566666666665


Q ss_pred             CChhhHHHhhCCCCCcEEecccCCCCchHHHhhhCCCCCcEEEccCCCCCHHHHHHHhcCCCCCEeecCCCCCC-hhHHH
Q 012186          312 VGSSGLRHLSGLTNLESINLSFTGISDGSLRKLAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLFGARIT-DSGAA  390 (469)
Q Consensus       312 ~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~-~~~~~  390 (469)
                      +....  ....+++|+.|++++|.++...+ .+..+++|+.|++++|.++.. +..+..+++|+.|++++|++. +..+.
T Consensus       181 l~~~~--~~~~l~~L~~L~Ls~N~l~~~~~-~~~~l~~L~~L~Ls~N~l~~l-p~~l~~l~~L~~L~l~~N~l~c~~~~~  256 (487)
T 3oja_A          181 IYDVK--GQVVFAKLKTLDLSSNKLAFMGP-EFQSAAGVTWISLRNNKLVLI-EKALRFSQNLEHFDLRGNGFHCGTLRD  256 (487)
T ss_dssp             CCEEE--CCCCCTTCCEEECCSSCCCEECG-GGGGGTTCSEEECTTSCCCEE-CTTCCCCTTCCEEECTTCCBCHHHHHH
T ss_pred             ccccc--ccccCCCCCEEECCCCCCCCCCH-hHcCCCCccEEEecCCcCccc-chhhccCCCCCEEEcCCCCCcCcchHH
Confidence            54431  12235555555555555544332 244455555555555555542 222344455555555555554 33344


Q ss_pred             HhHcCCCCCeeee
Q 012186          391 YLRNFKNLRSLEI  403 (469)
Q Consensus       391 ~~~~~~~L~~L~l  403 (469)
                      ++..++.|+.+++
T Consensus       257 ~~~~l~~L~~l~~  269 (487)
T 3oja_A          257 FFSKNQRVQTVAK  269 (487)
T ss_dssp             HHTTCHHHHHHHH
T ss_pred             HHHhCCCCcEEec
Confidence            4444444444433

>2z62_A TOLL-like receptor 4, variable lymphocyte recepto; TLR, VLR hybrid, MD-2, LPS, glycoprotein response, inflammatory response, innate immunity; HET: NAG FUL BMA; 1.70A {Homo sapiens} PDB: 2z65_A* 3ul8_A* 3ula_A* 3ul7_A*

Probab=99.85  E-value=1e-22  Score=181.72  Aligned_cols=203  Identities=23%  Similarity=0.188  Sum_probs=161.0

Q ss_pred             CCCcEEECCCCCCChhHHHHhhcCCCccEEEccCCCCchHHHHHhhCCCCCCEEecCCCCCChHHHHHhhCCCCCCEEec
Q 012186          228 GSLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNLDSCGIGDEGLVNLTGLCNLKCLEL  307 (469)
Q Consensus       228 ~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l  307 (469)
                      +++++|++++|.+....+..+..+++|+.|++++|.+....+..+..+++|+.|++++|.+....+..+..+++|++|++
T Consensus        28 ~~l~~L~ls~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l  107 (276)
T 2z62_A           28 FSTKNLDLSFNPLRHLGSYSFFSFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNPIQSLALGAFSGLSSLQKLVA  107 (276)
T ss_dssp             TTCCEEECTTCCCCEECTTTTTTCTTCSEEECTTCCCCEECTTTTTTCTTCCEEECTTCCCCEECTTTTTTCTTCCEEEC
T ss_pred             CCccEEECCCCcccccCHhHhccccCCcEEECCCCcCCccCHHHccCCcCCCEEECCCCccCccChhhhcCCccccEEEC
Confidence            57999999999988776667888999999999999888766667888899999999999887766667888899999999


Q ss_pred             cCCCCChhhHHHhhCCCCCcEEecccCCCCch-HHHhhhCCCCCcEEEccCCCCCHHHHHHHhcCCCCC----EeecCCC
Q 012186          308 SDTQVGSSGLRHLSGLTNLESINLSFTGISDG-SLRKLAGLSSLKSLNLDARQITDTGLAALTSLTGLT----HLDLFGA  382 (469)
Q Consensus       308 ~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~-~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~----~L~l~~~  382 (469)
                      .+|.+.......++.+++|+.|++++|.+... .+..+..+++|+.|++++|.++...+..+..+++|+    +|++++|
T Consensus       108 ~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~l~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~l~l~L~ls~n  187 (276)
T 2z62_A          108 VETNLASLENFPIGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQSIYCTDLRVLHQMPLLNLSLDLSLN  187 (276)
T ss_dssp             TTSCCCCSTTCCCTTCTTCCEEECCSSCCCCCCCCGGGGGCTTCCEEECCSSCCCEECGGGGHHHHTCTTCCEEEECCSS
T ss_pred             CCCCccccCchhcccCCCCCEEECcCCccceecCchhhccCCCCCEEECCCCCCCcCCHHHhhhhhhccccceeeecCCC
Confidence            99888776655678889999999999888764 366778888999999999888875444444444444    7888888


Q ss_pred             CCChhHHHHhHcCCCCCeeeeCCCCCCHHHHHHHhcCCCCCeeeccCCC
Q 012186          383 RITDSGAAYLRNFKNLRSLEICGGGLTDAGVKHIKDLSSLTLLNLSQNC  431 (469)
Q Consensus       383 ~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~  431 (469)
                      .+++..+..+. ..+|+.|++++|.++...+..+..+++|++|++++|+
T Consensus       188 ~l~~~~~~~~~-~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~N~  235 (276)
T 2z62_A          188 PMNFIQPGAFK-EIRLKELALDTNQLKSVPDGIFDRLTSLQKIWLHTNP  235 (276)
T ss_dssp             CCCEECTTSSC-SCCEEEEECCSSCCSCCCTTTTTTCCSCCEEECCSSC
T ss_pred             cccccCccccC-CCcccEEECCCCceeecCHhHhcccccccEEEccCCc
Confidence            88876554443 3478889999888887766667788889999998884

>2o6q_A Variable lymphocyte receptor A; leucine-rich repeat protein, LRR, immune system; 2.50A {Eptatretus burgeri}

Probab=99.85  E-value=2e-22  Score=178.93  Aligned_cols=201  Identities=18%  Similarity=0.217  Sum_probs=170.2

Q ss_pred             CCCcEEECCCCCCChhHHHHhhcCCCccEEEccCCCCchHHHHHhhCCCCCCEEecCCCCCChHHHHHhhCCCCCCEEec
Q 012186          228 GSLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNLDSCGIGDEGLVNLTGLCNLKCLEL  307 (469)
Q Consensus       228 ~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l  307 (469)
                      .+.+.++++++.+... +..+  .++++.|+++++.+....+..+..+++|++|++++|.+.......+..+++|++|++
T Consensus        16 ~~~~~l~~~~~~l~~i-p~~~--~~~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~i~~~~~~~l~~L~~L~l   92 (270)
T 2o6q_A           16 NNKNSVDCSSKKLTAI-PSNI--PADTKKLDLQSNKLSSLPSKAFHRLTKLRLLYLNDNKLQTLPAGIFKELKNLETLWV   92 (270)
T ss_dssp             TTTTEEECTTSCCSSC-CSCC--CTTCSEEECCSSCCSCCCTTSSSSCTTCCEEECCSSCCSCCCTTTTSSCTTCCEEEC
T ss_pred             CCCCEEEccCCCCCcc-CCCC--CCCCCEEECcCCCCCeeCHHHhcCCCCCCEEECCCCccCeeChhhhcCCCCCCEEEC
Confidence            4577899988887653 2222  367999999999988766667888999999999999887665556778999999999


Q ss_pred             cCCCCChhhHHHhhCCCCCcEEecccCCCCchHHHhhhCCCCCcEEEccCCCCCHHHHHHHhcCCCCCEeecCCCCCChh
Q 012186          308 SDTQVGSSGLRHLSGLTNLESINLSFTGISDGSLRKLAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLFGARITDS  387 (469)
Q Consensus       308 ~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~  387 (469)
                      ++|.+.......+..+++|++|++++|.+....+..+..+++|+.|++++|.++......+..+++|++|++++|.+++.
T Consensus        93 ~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~  172 (270)
T 2o6q_A           93 TDNKLQALPIGVFDQLVNLAELRLDRNQLKSLPPRVFDSLTKLTYLSLGYNELQSLPKGVFDKLTSLKELRLYNNQLKRV  172 (270)
T ss_dssp             CSSCCCCCCTTTTTTCSSCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCSCC
T ss_pred             CCCcCCcCCHhHcccccCCCEEECCCCccCeeCHHHhCcCcCCCEEECCCCcCCccCHhHccCCcccceeEecCCcCcEe
Confidence            99988877777778899999999999998887777788899999999999999887666688899999999999999987


Q ss_pred             HHHHhHcCCCCCeeeeCCCCCCHHHHHHHhcCCCCCeeeccCCC
Q 012186          388 GAAYLRNFKNLRSLEICGGGLTDAGVKHIKDLSSLTLLNLSQNC  431 (469)
Q Consensus       388 ~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~  431 (469)
                      .+..+..+++|+.|++++|.++...+..+..+++|+.|++++|+
T Consensus       173 ~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~  216 (270)
T 2o6q_A          173 PEGAFDKLTELKTLKLDNNQLKRVPEGAFDSLEKLKMLQLQENP  216 (270)
T ss_dssp             CTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSC
T ss_pred             ChhHhccCCCcCEEECCCCcCCcCCHHHhccccCCCEEEecCCC
Confidence            77778889999999999999988766677889999999999995

>2z62_A TOLL-like receptor 4, variable lymphocyte recepto; TLR, VLR hybrid, MD-2, LPS, glycoprotein response, inflammatory response, innate immunity; HET: NAG FUL BMA; 1.70A {Homo sapiens} PDB: 2z65_A* 3ul8_A* 3ula_A* 3ul7_A*

Probab=99.83  E-value=1.5e-21  Score=174.04  Aligned_cols=206  Identities=20%  Similarity=0.176  Sum_probs=112.5

Q ss_pred             CCCCEEEecccccChhhhhhccCCCCCCeeeccCCCCchhhHHhhhcCCCCcEEECCCCCCChhHHHHhhcCCCccEEEc
Q 012186          180 TNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACLDSLSALGSLFYLNLNRCQLSDDGCEKFSKIGSLKVLNL  259 (469)
Q Consensus       180 ~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l  259 (469)
                      ++|++|+++++.++......+..+++|++|++++|.+....+..+..+++|++|++++|.+....+..+..+++|+.|++
T Consensus        28 ~~l~~L~ls~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l  107 (276)
T 2z62_A           28 FSTKNLDLSFNPLRHLGSYSFFSFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNPIQSLALGAFSGLSSLQKLVA  107 (276)
T ss_dssp             TTCCEEECTTCCCCEECTTTTTTCTTCSEEECTTCCCCEECTTTTTTCTTCCEEECTTCCCCEECTTTTTTCTTCCEEEC
T ss_pred             CCccEEECCCCcccccCHhHhccccCCcEEECCCCcCCccCHHHccCCcCCCEEECCCCccCccChhhhcCCccccEEEC
Confidence            45777777777776655556666777777777777666555555666666666666666665554455556666666666


Q ss_pred             cCCCCchHHHHHhhCCCCCCEEecCCCCCChHHHHHhhCCCCCCEEeccCCCCChhhHHHhhCCCCCcEEecccCCCCch
Q 012186          260 GFNEITDECLVHLKGLTNLESLNLDSCGIGDEGLVNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISDG  339 (469)
Q Consensus       260 ~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~  339 (469)
                      ++|.+....+..+..+++|+.|++++|.+....                       .+..++.+++|+.|++++|.+...
T Consensus       108 ~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~-----------------------l~~~~~~l~~L~~L~Ls~N~l~~~  164 (276)
T 2z62_A          108 VETNLASLENFPIGHLKTLKELNVAHNLIQSFK-----------------------LPEYFSNLTNLEHLDLSSNKIQSI  164 (276)
T ss_dssp             TTSCCCCSTTCCCTTCTTCCEEECCSSCCCCCC-----------------------CCGGGGGCTTCCEEECCSSCCCEE
T ss_pred             CCCCccccCchhcccCCCCCEEECcCCccceec-----------------------CchhhccCCCCCEEECCCCCCCcC
Confidence            666555433323445555555555555443311                       123344445555555555544443


Q ss_pred             HHHhhhCCCCCc----EEEccCCCCCHHHHHHHhcCCCCCEeecCCCCCChhHHHHhHcCCCCCeeeeCCCCCC
Q 012186          340 SLRKLAGLSSLK----SLNLDARQITDTGLAALTSLTGLTHLDLFGARITDSGAAYLRNFKNLRSLEICGGGLT  409 (469)
Q Consensus       340 ~~~~~~~~~~L~----~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~  409 (469)
                      .+..+..+++|+    .|++++|.++......+ ...+|++|++++|.+++..+..+..+++|+.|++++|.++
T Consensus       165 ~~~~~~~l~~L~~l~l~L~ls~n~l~~~~~~~~-~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~N~~~  237 (276)
T 2z62_A          165 YCTDLRVLHQMPLLNLSLDLSLNPMNFIQPGAF-KEIRLKELALDTNQLKSVPDGIFDRLTSLQKIWLHTNPWD  237 (276)
T ss_dssp             CGGGGHHHHTCTTCCEEEECCSSCCCEECTTSS-CSCCEEEEECCSSCCSCCCTTTTTTCCSCCEEECCSSCBC
T ss_pred             CHHHhhhhhhccccceeeecCCCcccccCcccc-CCCcccEEECCCCceeecCHhHhcccccccEEEccCCccc
Confidence            333333222232    55555555554432222 2235666666666665554444555666666666665544

>4glp_A Monocyte differentiation antigen CD14; alpha beta BENT solenoid, LRR, lipopolysaccharide, serum, CD leucine-rich repeat, pattern recognition; 4.00A {Homo sapiens}

Probab=99.83  E-value=1.5e-21  Score=177.01  Aligned_cols=227  Identities=17%  Similarity=0.103  Sum_probs=152.9

Q ss_pred             CCcEEECCCCCCChhHHHH---hhcCCCccEEEccCCCCchHHHHHh--hCCCCCCEEecCCCCCChH----HHHHhhCC
Q 012186          229 SLFYLNLNRCQLSDDGCEK---FSKIGSLKVLNLGFNEITDECLVHL--KGLTNLESLNLDSCGIGDE----GLVNLTGL  299 (469)
Q Consensus       229 ~L~~L~l~~~~~~~~~~~~---~~~~~~L~~L~l~~~~~~~~~~~~~--~~l~~L~~L~l~~~~~~~~----~~~~~~~~  299 (469)
                      .++.+.+.++.+.......   +..+++|+.|++++|.+.+..+..+  ..+++|+.|++++|.+...    ....+..+
T Consensus        65 ~l~~l~l~~~~~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~~~~L~~L~Ls~n~i~~~~~~~~~~~~~~~  144 (310)
T 4glp_A           65 RVRRLTVGAAQVPAQLLVGALRVLAYSRLKELTLEDLKITGTMPPLPLEATGLALSSLRLRNVSWATGRSWLAELQQWLK  144 (310)
T ss_dssp             CCCEEEECSCCCBHHHHHHHHHHHHHSCCCEEEEESCCCBSCCCCCSSSCCCBCCSSCEEESCCCSSTTSSHHHHHTTBC
T ss_pred             ceeEEEEeCCcCCHHHHHHHHHhcccCceeEEEeeCCEeccchhhhhhhccCCCCCEEEeecccccchhhhhHHHHhhhc
Confidence            3445555554443322211   1223456666666666655444444  5666777777777765541    12334467


Q ss_pred             CCCCEEeccCCCCChhhHHHhhCCCCCcEEecccCCCCchHH----HhhhCCCCCcEEEccCCCCCHHHHH---HHhcCC
Q 012186          300 CNLKCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISDGSL----RKLAGLSSLKSLNLDARQITDTGLA---ALTSLT  372 (469)
Q Consensus       300 ~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~----~~~~~~~~L~~L~l~~~~~~~~~~~---~l~~~~  372 (469)
                      ++|++|++++|.+....+..++.+++|++|++++|.+.....    ..+..+++|+.|++++|.++.....   .+..++
T Consensus       145 ~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~l~~~~~~l~~~l~  224 (310)
T 4glp_A          145 PGLKVLSIAQAHSPAFSCEQVRAFPALTSLDLSDNPGLGERGLMAALCPHKFPAIQNLALRNTGMETPTGVCAALAAAGV  224 (310)
T ss_dssp             SCCCEEEEECCSSCCCCTTSCCCCTTCCEEECCSCTTCHHHHHHTTSCTTSSCCCCSCBCCSSCCCCHHHHHHHHHHHTC
T ss_pred             cCCCEEEeeCCCcchhhHHHhccCCCCCEEECCCCCCccchhhhHHHhhhcCCCCCEEECCCCCCCchHHHHHHHHhcCC
Confidence            777788887777766666667777888888888887654211    1224678889999998888753221   356789


Q ss_pred             CCCEeecCCCCCChhHHHHhHcC---CCCCeeeeCCCCCCHHHHHHHhcCCCCCeeeccCCCCCChhHHHHHHhCccccc
Q 012186          373 GLTHLDLFGARITDSGAAYLRNF---KNLRSLEICGGGLTDAGVKHIKDLSSLTLLNLSQNCNLTDKTLELISGLTGLVS  449 (469)
Q Consensus       373 ~L~~L~l~~~~~~~~~~~~~~~~---~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~l~~~~~~~l~~l~~L~~  449 (469)
                      +|++|++++|.+++..|..+..+   ++|+.|++++|+++.. |..+  .++|++|++++| .++....  +..+++|+.
T Consensus       225 ~L~~L~Ls~N~l~~~~p~~~~~~~~~~~L~~L~Ls~N~l~~l-p~~~--~~~L~~L~Ls~N-~l~~~~~--~~~l~~L~~  298 (310)
T 4glp_A          225 QPHSLDLSHNSLRATVNPSAPRCMWSSALNSLNLSFAGLEQV-PKGL--PAKLRVLDLSSN-RLNRAPQ--PDELPEVDN  298 (310)
T ss_dssp             CCSSEECTTSCCCCCCCSCCSSCCCCTTCCCEECCSSCCCSC-CSCC--CSCCSCEECCSC-CCCSCCC--TTSCCCCSC
T ss_pred             CCCEEECCCCCCCccchhhHHhccCcCcCCEEECCCCCCCch-hhhh--cCCCCEEECCCC-cCCCCch--hhhCCCccE
Confidence            99999999999888766656555   6999999999999854 5444  379999999999 7776422  567899999


Q ss_pred             ccccCCCCCHHH
Q 012186          450 LNVSNSRITSAG  461 (469)
Q Consensus       450 L~l~~~~~~~~~  461 (469)
                      |++++|++++.|
T Consensus       299 L~L~~N~l~~~g  310 (310)
T 4glp_A          299 LTLDGNPFLVPG  310 (310)
T ss_dssp             EECSSTTTSCCC
T ss_pred             EECcCCCCCCCC
Confidence            999999988653

>3rfs_A Internalin B, repeat modules, variable lymphocyte B; LRR, protein binding, plasma; 1.70A {Listeria monocytogenes} PDB: 3rfj_A

Probab=99.83  E-value=1.8e-21  Score=172.93  Aligned_cols=209  Identities=21%  Similarity=0.200  Sum_probs=146.5

Q ss_pred             hhcCCCCcEEECCCCCCChhHHHHhhcCCCccEEEccCCCCchHHHHHhhCCCCCCEEecCCCCCChHHHHHhhCCCCCC
Q 012186          224 LSALGSLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNLDSCGIGDEGLVNLTGLCNLK  303 (469)
Q Consensus       224 ~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~L~  303 (469)
                      ...+++|+.|++.++.+...  ..+..+++|+.|++++|.+.+.  ..+..+++|++|++++|.+....+..+..+++|+
T Consensus        37 ~~~l~~L~~L~l~~~~i~~~--~~l~~l~~L~~L~l~~n~l~~~--~~l~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~  112 (272)
T 3rfs_A           37 QNELNSIDQIIANNSDIKSV--QGIQYLPNVRYLALGGNKLHDI--SALKELTNLTYLILTGNQLQSLPNGVFDKLTNLK  112 (272)
T ss_dssp             HHHHTTCCEEECTTSCCCCC--TTGGGCTTCCEEECTTSCCCCC--GGGTTCTTCCEEECTTSCCCCCCTTTTTTCTTCC
T ss_pred             cccccceeeeeeCCCCcccc--cccccCCCCcEEECCCCCCCCc--hhhcCCCCCCEEECCCCccCccChhHhcCCcCCC
Confidence            34567888888888776642  3466778888888888877653  3567778888888888877665555567777888


Q ss_pred             EEeccCCCCChhhHHHhhCCCCCcEEecccCCCCchHHHhhhCCCCCcEEEccCCCCCHHHHHHHhcCCCCCEeecCCCC
Q 012186          304 CLELSDTQVGSSGLRHLSGLTNLESINLSFTGISDGSLRKLAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLFGAR  383 (469)
Q Consensus       304 ~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~  383 (469)
                      +|++++|.+....+..++.+++|++|++++|.+....+..+..+++|+.|++++|.++...+..+..+++|++|++++|.
T Consensus       113 ~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~N~  192 (272)
T 3rfs_A          113 ELVLVENQLQSLPDGVFDKLTNLTYLNLAHNQLQSLPKGVFDKLTNLTELDLSYNQLQSLPEGVFDKLTQLKDLRLYQNQ  192 (272)
T ss_dssp             EEECTTSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSC
T ss_pred             EEECCCCcCCccCHHHhccCCCCCEEECCCCccCccCHHHhccCccCCEEECCCCCcCccCHHHhcCCccCCEEECCCCc
Confidence            88888877776655556777777888877777776655556677777777777777776655556677777777777777


Q ss_pred             CChhHHHHhHcCCCCCeeeeCCCCCCHHHHHHHhcCCCCCeeeccCCCCCChhHHHHHHhC
Q 012186          384 ITDSGAAYLRNFKNLRSLEICGGGLTDAGVKHIKDLSSLTLLNLSQNCNLTDKTLELISGL  444 (469)
Q Consensus       384 ~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~l~~~~~~~l~~l  444 (469)
                      +++..+..+..+++|+.|++++|.+..       .++.|+.|+++.| .+.+..|..++.+
T Consensus       193 l~~~~~~~~~~l~~L~~L~l~~N~~~~-------~~~~l~~l~~~~n-~~~g~ip~~~~~~  245 (272)
T 3rfs_A          193 LKSVPDGVFDRLTSLQYIWLHDNPWDC-------TCPGIRYLSEWIN-KHSGVVRNSAGSV  245 (272)
T ss_dssp             CSCCCTTTTTTCTTCCEEECCSSCBCC-------CTTTTHHHHHHHH-HTGGGBBCTTSCB
T ss_pred             CCccCHHHHhCCcCCCEEEccCCCccc-------cCcHHHHHHHHHH-hCCCcccCccccc
Confidence            777666666777777777777776542       3566777777766 5555555544443

>1h6u_A Internalin H; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.8A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1

Probab=99.83  E-value=2.1e-20  Score=169.02  Aligned_cols=194  Identities=28%  Similarity=0.396  Sum_probs=154.2

Q ss_pred             hcCCCCcEEECCCCCCChhHHHHhhcCCCccEEEccCCCCchHHHHHhhCCCCCCEEecCCCCCChHHHHHhhCCCCCCE
Q 012186          225 SALGSLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNLDSCGIGDEGLVNLTGLCNLKC  304 (469)
Q Consensus       225 ~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~L~~  304 (469)
                      ..+++|++|++.++.+...  ..+..+++|+.|++++|.+.+..+  +..+++|+.|++++|.+...  ..+..+++|+.
T Consensus        38 ~~l~~L~~L~l~~~~i~~l--~~~~~l~~L~~L~L~~n~i~~~~~--~~~l~~L~~L~L~~n~l~~~--~~~~~l~~L~~  111 (308)
T 1h6u_A           38 ADLDGITTLSAFGTGVTTI--EGVQYLNNLIGLELKDNQITDLAP--LKNLTKITELELSGNPLKNV--SAIAGLQSIKT  111 (308)
T ss_dssp             HHHHTCCEEECTTSCCCCC--TTGGGCTTCCEEECCSSCCCCCGG--GTTCCSCCEEECCSCCCSCC--GGGTTCTTCCE
T ss_pred             HHcCCcCEEEeeCCCccCc--hhhhccCCCCEEEccCCcCCCChh--HccCCCCCEEEccCCcCCCc--hhhcCCCCCCE
Confidence            3567899999999887753  257788999999999998876544  78889999999999887654  35778889999


Q ss_pred             EeccCCCCChhhHHHhhCCCCCcEEecccCCCCchHHHhhhCCCCCcEEEccCCCCCHHHHHHHhcCCCCCEeecCCCCC
Q 012186          305 LELSDTQVGSSGLRHLSGLTNLESINLSFTGISDGSLRKLAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLFGARI  384 (469)
Q Consensus       305 L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~  384 (469)
                      |++++|.+....  .+..+++|+.|++++|.+....+  +..+++|+.|++++|.++....  +..+++|+.|++++|.+
T Consensus       112 L~l~~n~l~~~~--~l~~l~~L~~L~l~~n~l~~~~~--l~~l~~L~~L~l~~n~l~~~~~--l~~l~~L~~L~l~~n~l  185 (308)
T 1h6u_A          112 LDLTSTQITDVT--PLAGLSNLQVLYLDLNQITNISP--LAGLTNLQYLSIGNAQVSDLTP--LANLSKLTTLKADDNKI  185 (308)
T ss_dssp             EECTTSCCCCCG--GGTTCTTCCEEECCSSCCCCCGG--GGGCTTCCEEECCSSCCCCCGG--GTTCTTCCEEECCSSCC
T ss_pred             EECCCCCCCCch--hhcCCCCCCEEECCCCccCcCcc--ccCCCCccEEEccCCcCCCChh--hcCCCCCCEEECCCCcc
Confidence            999998877643  37888899999999888876544  7788889999998888887544  77888888999988888


Q ss_pred             ChhHHHHhHcCCCCCeeeeCCCCCCHHHHHHHhcCCCCCeeeccCCCCCCh
Q 012186          385 TDSGAAYLRNFKNLRSLEICGGGLTDAGVKHIKDLSSLTLLNLSQNCNLTD  435 (469)
Q Consensus       385 ~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~l~~  435 (469)
                      ++..+  +..+++|+.|++++|.+++..+  +..+++|+.|++++| .++.
T Consensus       186 ~~~~~--l~~l~~L~~L~L~~N~l~~~~~--l~~l~~L~~L~l~~N-~i~~  231 (308)
T 1h6u_A          186 SDISP--LASLPNLIEVHLKNNQISDVSP--LANTSNLFIVTLTNQ-TITN  231 (308)
T ss_dssp             CCCGG--GGGCTTCCEEECTTSCCCBCGG--GTTCTTCCEEEEEEE-EEEC
T ss_pred             CcChh--hcCCCCCCEEEccCCccCcccc--ccCCCCCCEEEccCC-eeec
Confidence            87554  7788888888888888887653  677888888888888 4443

>2o6q_A Variable lymphocyte receptor A; leucine-rich repeat protein, LRR, immune system; 2.50A {Eptatretus burgeri}

Probab=99.82  E-value=1.2e-20  Score=167.48  Aligned_cols=134  Identities=23%  Similarity=0.225  Sum_probs=53.4

Q ss_pred             cCCCccEEEccCCCCchHHHHHhhCCCCCCEEecCCCCCChHHHHHhhCCCCCCEEeccCCCCChhhHHHhhCCCCCcEE
Q 012186          250 KIGSLKVLNLGFNEITDECLVHLKGLTNLESLNLDSCGIGDEGLVNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESI  329 (469)
Q Consensus       250 ~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L  329 (469)
                      .+++|+.|++++|.+....+..+..+++|+.|++++|.+....+..+..+++|++|++++|.+.......+..+++|+.|
T Consensus        83 ~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L  162 (270)
T 2o6q_A           83 ELKNLETLWVTDNKLQALPIGVFDQLVNLAELRLDRNQLKSLPPRVFDSLTKLTYLSLGYNELQSLPKGVFDKLTSLKEL  162 (270)
T ss_dssp             SCTTCCEEECCSSCCCCCCTTTTTTCSSCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEE
T ss_pred             CCCCCCEEECCCCcCCcCCHhHcccccCCCEEECCCCccCeeCHHHhCcCcCCCEEECCCCcCCccCHhHccCCccccee
Confidence            33444444444433332222223333444444444443333222223334444444444443333322233344444444


Q ss_pred             ecccCCCCchHHHhhhCCCCCcEEEccCCCCCHHHHHHHhcCCCCCEeecCCCC
Q 012186          330 NLSFTGISDGSLRKLAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLFGAR  383 (469)
Q Consensus       330 ~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~  383 (469)
                      ++++|.+....+..+..+++|+.|++++|.++......+..+++|+.|++++|+
T Consensus       163 ~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~  216 (270)
T 2o6q_A          163 RLYNNQLKRVPEGAFDKLTELKTLKLDNNQLKRVPEGAFDSLEKLKMLQLQENP  216 (270)
T ss_dssp             ECCSSCCSCCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSC
T ss_pred             EecCCcCcEeChhHhccCCCcCEEECCCCcCCcCCHHHhccccCCCEEEecCCC
Confidence            444444443333333444444444444444443333333344444444444443

>3rfs_A Internalin B, repeat modules, variable lymphocyte B; LRR, protein binding, plasma; 1.70A {Listeria monocytogenes} PDB: 3rfj_A

Probab=99.82  E-value=6.1e-21  Score=169.52  Aligned_cols=182  Identities=24%  Similarity=0.180  Sum_probs=76.6

Q ss_pred             cCCCCCCeeeccCCCCchhhHHhhhcCCCCcEEECCCCCCChhHHHHhhcCCCccEEEccCCCCchHHHHHhhCCCCCCE
Q 012186          201 KGLQKLTLLNLEGCPVTAACLDSLSALGSLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLES  280 (469)
Q Consensus       201 ~~l~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~  280 (469)
                      ..+++|++|++++|.+...  ..+..+++|++|++++|.+....+..+..+++|+.|++++|.+....+..+..+++|+.
T Consensus        60 ~~l~~L~~L~l~~n~l~~~--~~l~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~  137 (272)
T 3rfs_A           60 QYLPNVRYLALGGNKLHDI--SALKELTNLTYLILTGNQLQSLPNGVFDKLTNLKELVLVENQLQSLPDGVFDKLTNLTY  137 (272)
T ss_dssp             GGCTTCCEEECTTSCCCCC--GGGTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCE
T ss_pred             ccCCCCcEEECCCCCCCCc--hhhcCCCCCCEEECCCCccCccChhHhcCCcCCCEEECCCCcCCccCHHHhccCCCCCE
Confidence            3344444444444433331  13334444444444444444333333344444444444444444333333344444444


Q ss_pred             EecCCCCCChHHHHHhhCCCCCCEEeccCCCCChhhHHHhhCCCCCcEEecccCCCCchHHHhhhCCCCCcEEEccCCCC
Q 012186          281 LNLDSCGIGDEGLVNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISDGSLRKLAGLSSLKSLNLDARQI  360 (469)
Q Consensus       281 L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~  360 (469)
                      |++++|.+....+..+..+++|+.|++++|.+....+..++.+++|+.|++++|.+....+..+..+++|+.|++++|.+
T Consensus       138 L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~~  217 (272)
T 3rfs_A          138 LNLAHNQLQSLPKGVFDKLTNLTELDLSYNQLQSLPEGVFDKLTQLKDLRLYQNQLKSVPDGVFDRLTSLQYIWLHDNPW  217 (272)
T ss_dssp             EECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSCB
T ss_pred             EECCCCccCccCHHHhccCccCCEEECCCCCcCccCHHHhcCCccCCEEECCCCcCCccCHHHHhCCcCCCEEEccCCCc
Confidence            44444444333222233444444444444444433333334444444444444444443333344444444444444443


Q ss_pred             CHHHHHHHhcCCCCCEeecCCCCCChhHHHH
Q 012186          361 TDTGLAALTSLTGLTHLDLFGARITDSGAAY  391 (469)
Q Consensus       361 ~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~  391 (469)
                      ..       .+++|+.++++.|.+++.+|.+
T Consensus       218 ~~-------~~~~l~~l~~~~n~~~g~ip~~  241 (272)
T 3rfs_A          218 DC-------TCPGIRYLSEWINKHSGVVRNS  241 (272)
T ss_dssp             CC-------CTTTTHHHHHHHHHTGGGBBCT
T ss_pred             cc-------cCcHHHHHHHHHHhCCCcccCc
Confidence            32       2344444444444444443333

>1h6u_A Internalin H; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.8A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1

Probab=99.81  E-value=1.8e-19  Score=162.78  Aligned_cols=196  Identities=30%  Similarity=0.390  Sum_probs=167.9

Q ss_pred             ccCCCCCCeeeccCCCCchhhHHhhhcCCCCcEEECCCCCCChhHHHHhhcCCCccEEEccCCCCchHHHHHhhCCCCCC
Q 012186          200 LKGLQKLTLLNLEGCPVTAACLDSLSALGSLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLE  279 (469)
Q Consensus       200 l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~  279 (469)
                      ...+++|+.|+++++.+...  ..+..+++|++|++++|.+....+  +..+++|+.|++++|.+.+.  ..+..+++|+
T Consensus        37 ~~~l~~L~~L~l~~~~i~~l--~~~~~l~~L~~L~L~~n~i~~~~~--~~~l~~L~~L~L~~n~l~~~--~~~~~l~~L~  110 (308)
T 1h6u_A           37 QADLDGITTLSAFGTGVTTI--EGVQYLNNLIGLELKDNQITDLAP--LKNLTKITELELSGNPLKNV--SAIAGLQSIK  110 (308)
T ss_dssp             HHHHHTCCEEECTTSCCCCC--TTGGGCTTCCEEECCSSCCCCCGG--GTTCCSCCEEECCSCCCSCC--GGGTTCTTCC
T ss_pred             HHHcCCcCEEEeeCCCccCc--hhhhccCCCCEEEccCCcCCCChh--HccCCCCCEEEccCCcCCCc--hhhcCCCCCC
Confidence            34577899999999988774  268889999999999999887554  88999999999999998864  3688899999


Q ss_pred             EEecCCCCCChHHHHHhhCCCCCCEEeccCCCCChhhHHHhhCCCCCcEEecccCCCCchHHHhhhCCCCCcEEEccCCC
Q 012186          280 SLNLDSCGIGDEGLVNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISDGSLRKLAGLSSLKSLNLDARQ  359 (469)
Q Consensus       280 ~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~  359 (469)
                      .|++++|.+....  .+..+++|+.|++++|.+.....  +..+++|+.|++++|.+.+..+  +..+++|+.|++++|.
T Consensus       111 ~L~l~~n~l~~~~--~l~~l~~L~~L~l~~n~l~~~~~--l~~l~~L~~L~l~~n~l~~~~~--l~~l~~L~~L~l~~n~  184 (308)
T 1h6u_A          111 TLDLTSTQITDVT--PLAGLSNLQVLYLDLNQITNISP--LAGLTNLQYLSIGNAQVSDLTP--LANLSKLTTLKADDNK  184 (308)
T ss_dssp             EEECTTSCCCCCG--GGTTCTTCCEEECCSSCCCCCGG--GGGCTTCCEEECCSSCCCCCGG--GTTCTTCCEEECCSSC
T ss_pred             EEECCCCCCCCch--hhcCCCCCCEEECCCCccCcCcc--ccCCCCccEEEccCCcCCCChh--hcCCCCCCEEECCCCc
Confidence            9999999887643  48899999999999998877554  7899999999999999887654  8889999999999999


Q ss_pred             CCHHHHHHHhcCCCCCEeecCCCCCChhHHHHhHcCCCCCeeeeCCCCCCHH
Q 012186          360 ITDTGLAALTSLTGLTHLDLFGARITDSGAAYLRNFKNLRSLEICGGGLTDA  411 (469)
Q Consensus       360 ~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~  411 (469)
                      ++....  +..+++|++|++++|++++..  .+..+++|+.|++++|.++..
T Consensus       185 l~~~~~--l~~l~~L~~L~L~~N~l~~~~--~l~~l~~L~~L~l~~N~i~~~  232 (308)
T 1h6u_A          185 ISDISP--LASLPNLIEVHLKNNQISDVS--PLANTSNLFIVTLTNQTITNQ  232 (308)
T ss_dssp             CCCCGG--GGGCTTCCEEECTTSCCCBCG--GGTTCTTCCEEEEEEEEEECC
T ss_pred             cCcChh--hcCCCCCCEEEccCCccCccc--cccCCCCCCEEEccCCeeecC
Confidence            987644  789999999999999999866  378899999999999988653

>1p9a_G Platelet glycoprotein IB alpha chain precursor; platelet receptors, glycocalicin, leucine rich repeats, BLOO clotting; HET: NAG BMA; 1.70A {Homo sapiens} SCOP: c.10.2.7 PDB: 1ook_G* 1qyy_A* 3pmh_G* 1m0z_A 1m10_B 1sq0_B 1gwb_A* 1p8v_A* 1u0n_D 3p72_A

Probab=99.79  E-value=2.4e-20  Score=166.82  Aligned_cols=204  Identities=20%  Similarity=0.106  Sum_probs=148.8

Q ss_pred             hccCCCCCCeeeccCCCCchhhHHhhhcCCCCcEEECCCCCCChhHHHHhhcCCCccEEEccCCCCchHHHHHhhCCCCC
Q 012186          199 YLKGLQKLTLLNLEGCPVTAACLDSLSALGSLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNL  278 (469)
Q Consensus       199 ~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L  278 (469)
                      .+..++++++++++++.++.. |..+  .++++.|++++|.+....+..+..+++|+.|++++|.++....  ...+++|
T Consensus         5 ~~~~l~~l~~l~~~~~~l~~i-p~~~--~~~l~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~--~~~l~~L   79 (290)
T 1p9a_G            5 EVSKVASHLEVNCDKRNLTAL-PPDL--PKDTTILHLSENLLYTFSLATLMPYTRLTQLNLDRAELTKLQV--DGTLPVL   79 (290)
T ss_dssp             EEECSTTCCEEECTTSCCSSC-CSCC--CTTCCEEECTTSCCSEEEGGGGTTCTTCCEEECTTSCCCEEEC--CSCCTTC
T ss_pred             cccccCCccEEECCCCCCCcC-CCCC--CCCCCEEEcCCCcCCccCHHHhhcCCCCCEEECCCCccCcccC--CCCCCcC
Confidence            456788899999998887764 3222  3688899999988887777778888889999998888775322  2577888


Q ss_pred             CEEecCCCCCChHHHHHhhCCCCCCEEeccCCCCChhhHHHhhCCCCCcEEecccCCCCchHHHhhhCCCCCcEEEccCC
Q 012186          279 ESLNLDSCGIGDEGLVNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISDGSLRKLAGLSSLKSLNLDAR  358 (469)
Q Consensus       279 ~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~  358 (469)
                      +.|++++|.+... +..+..+++|+.|++++|.+....+..+..+++|+.|++++|.+....+..+..+++|+.|++++|
T Consensus        80 ~~L~Ls~N~l~~l-~~~~~~l~~L~~L~l~~N~l~~l~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N  158 (290)
T 1p9a_G           80 GTLDLSHNQLQSL-PLLGQTLPALTVLDVSFNRLTSLPLGALRGLGELQELYLKGNELKTLPPGLLTPTPKLEKLSLANN  158 (290)
T ss_dssp             CEEECCSSCCSSC-CCCTTTCTTCCEEECCSSCCCCCCSSTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECTTS
T ss_pred             CEEECCCCcCCcC-chhhccCCCCCEEECCCCcCcccCHHHHcCCCCCCEEECCCCCCCccChhhcccccCCCEEECCCC
Confidence            8888888877632 334567778888888888777666566777788888888888777666666667777888888777


Q ss_pred             CCCHHHHHHHhcCCCCCEeecCCCCCChhHHHHhHcCCCCCeeeeCCCCCC
Q 012186          359 QITDTGLAALTSLTGLTHLDLFGARITDSGAAYLRNFKNLRSLEICGGGLT  409 (469)
Q Consensus       359 ~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~  409 (469)
                      +++......+..+++|+.|++++|+++.. |..+...++|+.+++++|.+.
T Consensus       159 ~l~~l~~~~~~~l~~L~~L~L~~N~l~~i-p~~~~~~~~L~~l~L~~Np~~  208 (290)
T 1p9a_G          159 NLTELPAGLLNGLENLDTLLLQENSLYTI-PKGFFGSHLLPFAFLHGNPWL  208 (290)
T ss_dssp             CCSCCCTTTTTTCTTCCEEECCSSCCCCC-CTTTTTTCCCSEEECCSCCBC
T ss_pred             cCCccCHHHhcCcCCCCEEECCCCcCCcc-ChhhcccccCCeEEeCCCCcc
Confidence            77766555566777777778777777753 444555667777777776654

>4glp_A Monocyte differentiation antigen CD14; alpha beta BENT solenoid, LRR, lipopolysaccharide, serum, CD leucine-rich repeat, pattern recognition; 4.00A {Homo sapiens}

Probab=99.79  E-value=4.9e-20  Score=167.09  Aligned_cols=33  Identities=27%  Similarity=0.401  Sum_probs=16.1

Q ss_pred             CCCCeeeeCCCCCCHHHHHHHhcCCCCCeeeccCC
Q 012186          396 KNLRSLEICGGGLTDAGVKHIKDLSSLTLLNLSQN  430 (469)
Q Consensus       396 ~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~  430 (469)
                      ++|+.|++++|++++. |. +..+++|+.|++++|
T Consensus       272 ~~L~~L~Ls~N~l~~~-~~-~~~l~~L~~L~L~~N  304 (310)
T 4glp_A          272 AKLRVLDLSSNRLNRA-PQ-PDELPEVDNLTLDGN  304 (310)
T ss_dssp             SCCSCEECCSCCCCSC-CC-TTSCCCCSCEECSST
T ss_pred             CCCCEEECCCCcCCCC-ch-hhhCCCccEEECcCC
Confidence            4555555555555443 11 334555555555555

>1p9a_G Platelet glycoprotein IB alpha chain precursor; platelet receptors, glycocalicin, leucine rich repeats, BLOO clotting; HET: NAG BMA; 1.70A {Homo sapiens} SCOP: c.10.2.7 PDB: 1ook_G* 1qyy_A* 3pmh_G* 1m0z_A 1m10_B 1sq0_B 1gwb_A* 1p8v_A* 1u0n_D 3p72_A

Probab=99.78  E-value=2e-19  Score=160.91  Aligned_cols=203  Identities=21%  Similarity=0.178  Sum_probs=107.0

Q ss_pred             ccCCCCccEEEccCCCCCChhhhhcccCCCCCCEEEecccccChhhhhhccCCCCCCeeeccCCCCchhhHHhhhcCCCC
Q 012186          151 LKGLMKLESLNIKWCNCITDSDMKPLSGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACLDSLSALGSL  230 (469)
Q Consensus       151 l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~L  230 (469)
                      +.++++++++++.++. +.. .+..+  .++++.|++++|.++......+..+++|++|++++|.+.....  ...+++ 
T Consensus         6 ~~~l~~l~~l~~~~~~-l~~-ip~~~--~~~l~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~--~~~l~~-   78 (290)
T 1p9a_G            6 VSKVASHLEVNCDKRN-LTA-LPPDL--PKDTTILHLSENLLYTFSLATLMPYTRLTQLNLDRAELTKLQV--DGTLPV-   78 (290)
T ss_dssp             EECSTTCCEEECTTSC-CSS-CCSCC--CTTCCEEECTTSCCSEEEGGGGTTCTTCCEEECTTSCCCEEEC--CSCCTT-
T ss_pred             ccccCCccEEECCCCC-CCc-CCCCC--CCCCCEEEcCCCcCCccCHHHhhcCCCCCEEECCCCccCcccC--CCCCCc-
Confidence            4455556666665522 222 11122  1455555555555554444455555555555555555443211  133444 


Q ss_pred             cEEECCCCCCChhHHHHhhcCCCccEEEccCCCCchHHHHHhhCCCCCCEEecCCCCCChHHHHHhhCCCCCCEEeccCC
Q 012186          231 FYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNLDSCGIGDEGLVNLTGLCNLKCLELSDT  310 (469)
Q Consensus       231 ~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~  310 (469)
                                             |+.|++++|.+.. .+..+..+++|+.|++++|.+....+..+..+++|+.|++++|
T Consensus        79 -----------------------L~~L~Ls~N~l~~-l~~~~~~l~~L~~L~l~~N~l~~l~~~~~~~l~~L~~L~L~~N  134 (290)
T 1p9a_G           79 -----------------------LGTLDLSHNQLQS-LPLLGQTLPALTVLDVSFNRLTSLPLGALRGLGELQELYLKGN  134 (290)
T ss_dssp             -----------------------CCEEECCSSCCSS-CCCCTTTCTTCCEEECCSSCCCCCCSSTTTTCTTCCEEECTTS
T ss_pred             -----------------------CCEEECCCCcCCc-CchhhccCCCCCEEECCCCcCcccCHHHHcCCCCCCEEECCCC
Confidence                                   4555554444432 2223344555555555555554443344555556666666666


Q ss_pred             CCChhhHHHhhCCCCCcEEecccCCCCchHHHhhhCCCCCcEEEccCCCCCHHHHHHHhcCCCCCEeecCCCCCC
Q 012186          311 QVGSSGLRHLSGLTNLESINLSFTGISDGSLRKLAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLFGARIT  385 (469)
Q Consensus       311 ~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~  385 (469)
                      .+....+..+..+++|+.|++++|.+.......+..+++|+.|++++|.++.. +..+..+++|+.+++.+|++.
T Consensus       135 ~l~~~~~~~~~~l~~L~~L~L~~N~l~~l~~~~~~~l~~L~~L~L~~N~l~~i-p~~~~~~~~L~~l~L~~Np~~  208 (290)
T 1p9a_G          135 ELKTLPPGLLTPTPKLEKLSLANNNLTELPAGLLNGLENLDTLLLQENSLYTI-PKGFFGSHLLPFAFLHGNPWL  208 (290)
T ss_dssp             CCCCCCTTTTTTCTTCCEEECTTSCCSCCCTTTTTTCTTCCEEECCSSCCCCC-CTTTTTTCCCSEEECCSCCBC
T ss_pred             CCCccChhhcccccCCCEEECCCCcCCccCHHHhcCcCCCCEEECCCCcCCcc-ChhhcccccCCeEEeCCCCcc
Confidence            55554444455566666666666666655545555666677777776666643 333445566777777776554

>2xwt_C Thyrotropin receptor; signaling protein-immune system complex, GPCR, graves' disea autoimmunity, receptor-autoantibody complex; HET: NAG BMA MAN; 1.90A {Homo sapiens} PDB: 3g04_C*

Probab=99.78  E-value=8.7e-21  Score=165.27  Aligned_cols=179  Identities=15%  Similarity=0.118  Sum_probs=87.3

Q ss_pred             CCcEEECCCCCCChhHHHHhhcCCCccEEEccCCC-CchHHHHHhhCCCCCCEEecCC-CCCChHHHHHhhCCCCCCEEe
Q 012186          229 SLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFNE-ITDECLVHLKGLTNLESLNLDS-CGIGDEGLVNLTGLCNLKCLE  306 (469)
Q Consensus       229 ~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~-~~~~~~~~~~~l~~L~~L~l~~-~~~~~~~~~~~~~~~~L~~L~  306 (469)
                      ++++|++++|.+....+..+..+++|+.|++++|. ++...+..+..+++|+.|++++ +.+....+..+..+++|++|+
T Consensus        32 ~l~~L~l~~n~l~~i~~~~~~~l~~L~~L~l~~n~~l~~i~~~~f~~l~~L~~L~l~~~n~l~~i~~~~f~~l~~L~~L~  111 (239)
T 2xwt_C           32 STQTLKLIETHLRTIPSHAFSNLPNISRIYVSIDVTLQQLESHSFYNLSKVTHIEIRNTRNLTYIDPDALKELPLLKFLG  111 (239)
T ss_dssp             TCCEEEEESCCCSEECTTTTTTCTTCCEEEEECCSSCCEECTTTEESCTTCCEEEEEEETTCCEECTTSEECCTTCCEEE
T ss_pred             cccEEEEeCCcceEECHHHccCCCCCcEEeCCCCCCcceeCHhHcCCCcCCcEEECCCCCCeeEcCHHHhCCCCCCCEEe
Confidence            56666666666655444455556666666666664 5443333455555666666655 555444333445555555555


Q ss_pred             ccCCCCChhhHHHhhCCCCCc---EEecccC-CCCchHHHhhhCCCCCc-EEEccCCCCCHHHHHHHhcCCCCCEeecCC
Q 012186          307 LSDTQVGSSGLRHLSGLTNLE---SINLSFT-GISDGSLRKLAGLSSLK-SLNLDARQITDTGLAALTSLTGLTHLDLFG  381 (469)
Q Consensus       307 l~~~~~~~~~~~~~~~~~~L~---~L~l~~~-~~~~~~~~~~~~~~~L~-~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~  381 (469)
                      +.+|.+.....  +..+++|+   .|++++| .+....+..+..+++|+ .|++++|.++......+.. ++|++|++++
T Consensus       112 l~~n~l~~lp~--~~~l~~L~~L~~L~l~~N~~l~~i~~~~~~~l~~L~~~L~l~~n~l~~i~~~~~~~-~~L~~L~L~~  188 (239)
T 2xwt_C          112 IFNTGLKMFPD--LTKVYSTDIFFILEITDNPYMTSIPVNAFQGLCNETLTLKLYNNGFTSVQGYAFNG-TKLDAVYLNK  188 (239)
T ss_dssp             EEEECCCSCCC--CTTCCBCCSEEEEEEESCTTCCEECTTTTTTTBSSEEEEECCSCCCCEECTTTTTT-CEEEEEECTT
T ss_pred             CCCCCCccccc--cccccccccccEEECCCCcchhhcCcccccchhcceeEEEcCCCCCcccCHhhcCC-CCCCEEEcCC
Confidence            55554443211  34444444   5555555 44444333444445555 5555554444332222222 4444444444


Q ss_pred             CC-CChhHHHHhHcC-CCCCeeeeCCCCCCH
Q 012186          382 AR-ITDSGAAYLRNF-KNLRSLEICGGGLTD  410 (469)
Q Consensus       382 ~~-~~~~~~~~~~~~-~~L~~L~l~~~~~~~  410 (469)
                      |+ +++..+..+..+ ++|+.|++++|.++.
T Consensus       189 n~~l~~i~~~~~~~l~~~L~~L~l~~N~l~~  219 (239)
T 2xwt_C          189 NKYLTVIDKDAFGGVYSGPSLLDVSQTSVTA  219 (239)
T ss_dssp             CTTCCEECTTTTTTCSBCCSEEECTTCCCCC
T ss_pred             CCCcccCCHHHhhccccCCcEEECCCCcccc
Confidence            42 444333344444 444444444444443

>2xwt_C Thyrotropin receptor; signaling protein-immune system complex, GPCR, graves' disea autoimmunity, receptor-autoantibody complex; HET: NAG BMA MAN; 1.90A {Homo sapiens} PDB: 3g04_C*

Probab=99.77  E-value=2e-20  Score=162.97  Aligned_cols=179  Identities=18%  Similarity=0.200  Sum_probs=83.0

Q ss_pred             CCCeeeccCCCCchhhHHhhhcCCCCcEEECCCCC-CChhHHHHhhcCCCccEEEccC-CCCchHHHHHhhCCCCCCEEe
Q 012186          205 KLTLLNLEGCPVTAACLDSLSALGSLFYLNLNRCQ-LSDDGCEKFSKIGSLKVLNLGF-NEITDECLVHLKGLTNLESLN  282 (469)
Q Consensus       205 ~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~-~~~~~~~~~~~~~~L~~L~l~~-~~~~~~~~~~~~~l~~L~~L~  282 (469)
                      ++++|+++++.++...+..+..+++|++|++++|. +....+..|..+++|+.|++++ |.++...+..+..+++|+.|+
T Consensus        32 ~l~~L~l~~n~l~~i~~~~~~~l~~L~~L~l~~n~~l~~i~~~~f~~l~~L~~L~l~~~n~l~~i~~~~f~~l~~L~~L~  111 (239)
T 2xwt_C           32 STQTLKLIETHLRTIPSHAFSNLPNISRIYVSIDVTLQQLESHSFYNLSKVTHIEIRNTRNLTYIDPDALKELPLLKFLG  111 (239)
T ss_dssp             TCCEEEEESCCCSEECTTTTTTCTTCCEEEEECCSSCCEECTTTEESCTTCCEEEEEEETTCCEECTTSEECCTTCCEEE
T ss_pred             cccEEEEeCCcceEECHHHccCCCCCcEEeCCCCCCcceeCHhHcCCCcCCcEEECCCCCCeeEcCHHHhCCCCCCCEEe
Confidence            45555555555444433344445555555555553 4443333444455555555554 444433333444455555555


Q ss_pred             cCCCCCChHHHHHhhCCCCCC---EEeccCC-CCChhhHHHhhCCCCCc-EEecccCCCCchHHHhhhCCCCCcEEEccC
Q 012186          283 LDSCGIGDEGLVNLTGLCNLK---CLELSDT-QVGSSGLRHLSGLTNLE-SINLSFTGISDGSLRKLAGLSSLKSLNLDA  357 (469)
Q Consensus       283 l~~~~~~~~~~~~~~~~~~L~---~L~l~~~-~~~~~~~~~~~~~~~L~-~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~  357 (469)
                      +++|.+...+  .+..+++|+   .|++++| .+.......+..+++|+ .|++++|.+.......+.. ++|+.|++++
T Consensus       112 l~~n~l~~lp--~~~~l~~L~~L~~L~l~~N~~l~~i~~~~~~~l~~L~~~L~l~~n~l~~i~~~~~~~-~~L~~L~L~~  188 (239)
T 2xwt_C          112 IFNTGLKMFP--DLTKVYSTDIFFILEITDNPYMTSIPVNAFQGLCNETLTLKLYNNGFTSVQGYAFNG-TKLDAVYLNK  188 (239)
T ss_dssp             EEEECCCSCC--CCTTCCBCCSEEEEEEESCTTCCEECTTTTTTTBSSEEEEECCSCCCCEECTTTTTT-CEEEEEECTT
T ss_pred             CCCCCCcccc--ccccccccccccEEECCCCcchhhcCcccccchhcceeEEEcCCCCCcccCHhhcCC-CCCCEEEcCC
Confidence            5554443311  134444444   5555555 44444333444455555 5555555444332222222 4455555555


Q ss_pred             CC-CCHHHHHHHhcC-CCCCEeecCCCCCCh
Q 012186          358 RQ-ITDTGLAALTSL-TGLTHLDLFGARITD  386 (469)
Q Consensus       358 ~~-~~~~~~~~l~~~-~~L~~L~l~~~~~~~  386 (469)
                      |. ++......+..+ ++|+.|++++|++++
T Consensus       189 n~~l~~i~~~~~~~l~~~L~~L~l~~N~l~~  219 (239)
T 2xwt_C          189 NKYLTVIDKDAFGGVYSGPSLLDVSQTSVTA  219 (239)
T ss_dssp             CTTCCEECTTTTTTCSBCCSEEECTTCCCCC
T ss_pred             CCCcccCCHHHhhccccCCcEEECCCCcccc
Confidence            52 444433444444 555555555554443

>3m19_A Variable lymphocyte receptor A diversity region; adaptive immunity, antibody, T cell, leucine-rich repeat, immune system; 1.70A {Petromyzon marinus} PDB: 3m18_A

Probab=99.77  E-value=5.7e-20  Score=161.25  Aligned_cols=177  Identities=20%  Similarity=0.247  Sum_probs=145.1

Q ss_pred             CCccEEEccCCCCchHHHHHhhCCCCCCEEecCCCCCChHHHHHhhCCCCCCEEeccCCCCChhhHHHhhCCCCCcEEec
Q 012186          252 GSLKVLNLGFNEITDECLVHLKGLTNLESLNLDSCGIGDEGLVNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINL  331 (469)
Q Consensus       252 ~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l  331 (469)
                      ...+.++++++.++. .|..+  .++++.|+++++.+....+..+..+++|++|++++|.+....+..+..+++|++|++
T Consensus        14 ~~~~~l~~~~~~l~~-~p~~~--~~~l~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L   90 (251)
T 3m19_A           14 EGKKEVDCQGKSLDS-VPSGI--PADTEKLDLQSTGLATLSDATFRGLTKLTWLNLDYNQLQTLSAGVFDDLTELGTLGL   90 (251)
T ss_dssp             GGGTEEECTTCCCSS-CCSCC--CTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEEC
T ss_pred             CCCeEEecCCCCccc-cCCCC--CCCCCEEEccCCCcCccCHhHhcCcccCCEEECCCCcCCccCHhHhccCCcCCEEEC
Confidence            456788888887764 23322  257899999999887766667888899999999999888777777888899999999


Q ss_pred             ccCCCCchHHHhhhCCCCCcEEEccCCCCCHHHHHHHhcCCCCCEeecCCCCCChhHHHHhHcCCCCCeeeeCCCCCCHH
Q 012186          332 SFTGISDGSLRKLAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLFGARITDSGAAYLRNFKNLRSLEICGGGLTDA  411 (469)
Q Consensus       332 ~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~  411 (469)
                      ++|.+....+..+..+++|+.|++++|.++......+..+++|++|++++|.+++..+..+..+++|+.|++++|.++..
T Consensus        91 ~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~  170 (251)
T 3m19_A           91 ANNQLASLPLGVFDHLTQLDKLYLGGNQLKSLPSGVFDRLTKLKELRLNTNQLQSIPAGAFDKLTNLQTLSLSTNQLQSV  170 (251)
T ss_dssp             TTSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCSCC
T ss_pred             CCCcccccChhHhcccCCCCEEEcCCCcCCCcChhHhccCCcccEEECcCCcCCccCHHHcCcCcCCCEEECCCCcCCcc
Confidence            99988877777778889999999999988877666677888999999999988887777788889999999999988887


Q ss_pred             HHHHHhcCCCCCeeeccCCC
Q 012186          412 GVKHIKDLSSLTLLNLSQNC  431 (469)
Q Consensus       412 ~~~~l~~~~~L~~L~l~~~~  431 (469)
                      .+..+..+++|++|++++|+
T Consensus       171 ~~~~~~~l~~L~~L~l~~N~  190 (251)
T 3m19_A          171 PHGAFDRLGKLQTITLFGNQ  190 (251)
T ss_dssp             CTTTTTTCTTCCEEECCSCC
T ss_pred             CHHHHhCCCCCCEEEeeCCc
Confidence            77677888899999999984

>3m19_A Variable lymphocyte receptor A diversity region; adaptive immunity, antibody, T cell, leucine-rich repeat, immune system; 1.70A {Petromyzon marinus} PDB: 3m18_A

Probab=99.75  E-value=3.2e-19  Score=156.40  Aligned_cols=181  Identities=20%  Similarity=0.218  Sum_probs=156.4

Q ss_pred             CCCcEEECCCCCCChhHHHHhhcCCCccEEEccCCCCchHHHHHhhCCCCCCEEecCCCCCChHHHHHhhCCCCCCEEec
Q 012186          228 GSLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNLDSCGIGDEGLVNLTGLCNLKCLEL  307 (469)
Q Consensus       228 ~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l  307 (469)
                      .+.+.+++.++.+.... ..+  .++++.|+++++.+....+..+..+++|+.|++++|.+....+..+..+++|+.|++
T Consensus        14 ~~~~~l~~~~~~l~~~p-~~~--~~~l~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L   90 (251)
T 3m19_A           14 EGKKEVDCQGKSLDSVP-SGI--PADTEKLDLQSTGLATLSDATFRGLTKLTWLNLDYNQLQTLSAGVFDDLTELGTLGL   90 (251)
T ss_dssp             GGGTEEECTTCCCSSCC-SCC--CTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEEC
T ss_pred             CCCeEEecCCCCccccC-CCC--CCCCCEEEccCCCcCccCHhHhcCcccCCEEECCCCcCCccCHhHhccCCcCCEEEC
Confidence            45678888888776532 222  368999999999998777777889999999999999988776667889999999999


Q ss_pred             cCCCCChhhHHHhhCCCCCcEEecccCCCCchHHHhhhCCCCCcEEEccCCCCCHHHHHHHhcCCCCCEeecCCCCCChh
Q 012186          308 SDTQVGSSGLRHLSGLTNLESINLSFTGISDGSLRKLAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLFGARITDS  387 (469)
Q Consensus       308 ~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~  387 (469)
                      ++|.+....+..+..+++|++|++++|.+....+..+..+++|+.|++++|.++...+..+..+++|++|++++|.+++.
T Consensus        91 ~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~  170 (251)
T 3m19_A           91 ANNQLASLPLGVFDHLTQLDKLYLGGNQLKSLPSGVFDRLTKLKELRLNTNQLQSIPAGAFDKLTNLQTLSLSTNQLQSV  170 (251)
T ss_dssp             TTSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCSCC
T ss_pred             CCCcccccChhHhcccCCCCEEEcCCCcCCCcChhHhccCCcccEEECcCCcCCccCHHHcCcCcCCCEEECCCCcCCcc
Confidence            99999887777788999999999999999887777788899999999999999987766788999999999999999988


Q ss_pred             HHHHhHcCCCCCeeeeCCCCCCHH
Q 012186          388 GAAYLRNFKNLRSLEICGGGLTDA  411 (469)
Q Consensus       388 ~~~~~~~~~~L~~L~l~~~~~~~~  411 (469)
                      .+..+..+++|+.|++++|.+...
T Consensus       171 ~~~~~~~l~~L~~L~l~~N~~~c~  194 (251)
T 3m19_A          171 PHGAFDRLGKLQTITLFGNQFDCS  194 (251)
T ss_dssp             CTTTTTTCTTCCEEECCSCCBCTT
T ss_pred             CHHHHhCCCCCCEEEeeCCceeCC
Confidence            877888999999999999988654

>1h6t_A Internalin B; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.6A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 2wqu_A 2uzy_A 2uzx_A 2wqv_A* 2wqw_A 2wqx_A 1d0b_A 1otn_A 1oto_A 1otm_A

Probab=99.73  E-value=2e-18  Score=154.48  Aligned_cols=168  Identities=29%  Similarity=0.367  Sum_probs=124.7

Q ss_pred             hcCCCccEEEccCCCCchHHHHHhhCCCCCCEEecCCCCCChHHHHHhhCCCCCCEEeccCCCCChhhHHHhhCCCCCcE
Q 012186          249 SKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNLDSCGIGDEGLVNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLES  328 (469)
Q Consensus       249 ~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~  328 (469)
                      ..+++|+.|+++++.+...  ..+..+++|+.|++++|.+....+  +..+++|+.|++++|.+....  .+..+++|+.
T Consensus        43 ~~l~~L~~L~l~~~~i~~~--~~~~~l~~L~~L~L~~n~l~~~~~--l~~l~~L~~L~l~~n~l~~~~--~l~~l~~L~~  116 (291)
T 1h6t_A           43 NELNSIDQIIANNSDIKSV--QGIQYLPNVTKLFLNGNKLTDIKP--LANLKNLGWLFLDENKVKDLS--SLKDLKKLKS  116 (291)
T ss_dssp             HHHHTCCEEECTTSCCCCC--TTGGGCTTCCEEECCSSCCCCCGG--GTTCTTCCEEECCSSCCCCGG--GGTTCTTCCE
T ss_pred             hhcCcccEEEccCCCcccC--hhHhcCCCCCEEEccCCccCCCcc--cccCCCCCEEECCCCcCCCCh--hhccCCCCCE
Confidence            4567788888888877653  246778888888888887765443  777888888888888776632  3777888888


Q ss_pred             EecccCCCCchHHHhhhCCCCCcEEEccCCCCCHHHHHHHhcCCCCCEeecCCCCCChhHHHHhHcCCCCCeeeeCCCCC
Q 012186          329 INLSFTGISDGSLRKLAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLFGARITDSGAAYLRNFKNLRSLEICGGGL  408 (469)
Q Consensus       329 L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~  408 (469)
                      |++++|.+.+.  ..+..+++|+.|++++|.++..  ..+..+++|+.|++++|.+++..+  +..+++|+.|++++|.+
T Consensus       117 L~L~~n~i~~~--~~l~~l~~L~~L~l~~n~l~~~--~~l~~l~~L~~L~L~~N~l~~~~~--l~~l~~L~~L~L~~N~i  190 (291)
T 1h6t_A          117 LSLEHNGISDI--NGLVHLPQLESLYLGNNKITDI--TVLSRLTKLDTLSLEDNQISDIVP--LAGLTKLQNLYLSKNHI  190 (291)
T ss_dssp             EECTTSCCCCC--GGGGGCTTCCEEECCSSCCCCC--GGGGGCTTCSEEECCSSCCCCCGG--GTTCTTCCEEECCSSCC
T ss_pred             EECCCCcCCCC--hhhcCCCCCCEEEccCCcCCcc--hhhccCCCCCEEEccCCccccchh--hcCCCccCEEECCCCcC
Confidence            88888877664  3566778888888888877765  456677888888888887777554  67778888888888877


Q ss_pred             CHHHHHHHhcCCCCCeeeccCC
Q 012186          409 TDAGVKHIKDLSSLTLLNLSQN  430 (469)
Q Consensus       409 ~~~~~~~l~~~~~L~~L~l~~~  430 (469)
                      ++..  .+..+++|+.|++++|
T Consensus       191 ~~l~--~l~~l~~L~~L~l~~n  210 (291)
T 1h6t_A          191 SDLR--ALAGLKNLDVLELFSQ  210 (291)
T ss_dssp             CBCG--GGTTCTTCSEEEEEEE
T ss_pred             CCCh--hhccCCCCCEEECcCC
Confidence            7652  3667778888888877

>4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes}

Probab=99.70  E-value=1.8e-17  Score=139.42  Aligned_cols=151  Identities=22%  Similarity=0.320  Sum_probs=79.6

Q ss_pred             CCCCEEeccCCCCChhhHHHhhCCCCCcEEecccCCCCchHHHhhhCCCCCcEEEccCCCCCHHHHHHHhcCCCCCEeec
Q 012186          300 CNLKCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISDGSLRKLAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDL  379 (469)
Q Consensus       300 ~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l  379 (469)
                      ++|+.|+++++.+....  .+..+++|++|++++|.+...  ..+..+++|+.|++++|.++...+..+..+++|++|++
T Consensus        44 ~~L~~L~l~~n~i~~l~--~l~~l~~L~~L~l~~n~~~~~--~~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~L  119 (197)
T 4ezg_A           44 NSLTYITLANINVTDLT--GIEYAHNIKDLTINNIHATNY--NPISGLSNLERLRIMGKDVTSDKIPNLSGLTSLTLLDI  119 (197)
T ss_dssp             HTCCEEEEESSCCSCCT--TGGGCTTCSEEEEESCCCSCC--GGGTTCTTCCEEEEECTTCBGGGSCCCTTCTTCCEEEC
T ss_pred             CCccEEeccCCCccChH--HHhcCCCCCEEEccCCCCCcc--hhhhcCCCCCEEEeECCccCcccChhhcCCCCCCEEEe
Confidence            34445555444444222  344455555555555544332  23445555555555555555444444555566666666


Q ss_pred             CCCCCChhHHHHhHcCCCCCeeeeCCCC-CCHHHHHHHhcCCCCCeeeccCCCCCChhHHHHHHhCcccccccccCCCCC
Q 012186          380 FGARITDSGAAYLRNFKNLRSLEICGGG-LTDAGVKHIKDLSSLTLLNLSQNCNLTDKTLELISGLTGLVSLNVSNSRIT  458 (469)
Q Consensus       380 ~~~~~~~~~~~~~~~~~~L~~L~l~~~~-~~~~~~~~l~~~~~L~~L~l~~~~~l~~~~~~~l~~l~~L~~L~l~~~~~~  458 (469)
                      ++|.+++..+..+..+++|+.|++++|. ++.. + .+..+++|++|++++| .++...  .+..+++|+.|++++|++.
T Consensus       120 s~n~i~~~~~~~l~~l~~L~~L~L~~n~~i~~~-~-~l~~l~~L~~L~l~~n-~i~~~~--~l~~l~~L~~L~l~~N~i~  194 (197)
T 4ezg_A          120 SHSAHDDSILTKINTLPKVNSIDLSYNGAITDI-M-PLKTLPELKSLNIQFD-GVHDYR--GIEDFPKLNQLYAFSQTIG  194 (197)
T ss_dssp             CSSBCBGGGHHHHTTCSSCCEEECCSCTBCCCC-G-GGGGCSSCCEEECTTB-CCCCCT--TGGGCSSCCEEEECBC---
T ss_pred             cCCccCcHhHHHHhhCCCCCEEEccCCCCcccc-H-hhcCCCCCCEEECCCC-CCcChH--HhccCCCCCEEEeeCcccC
Confidence            6666655555555566666666666665 4443 2 3556666666666666 454432  3556666666666666654


Q ss_pred             H
Q 012186          459 S  459 (469)
Q Consensus       459 ~  459 (469)
                      +
T Consensus       195 ~  195 (197)
T 4ezg_A          195 G  195 (197)
T ss_dssp             -
T ss_pred             C
Confidence            3

>1h6t_A Internalin B; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.6A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 2wqu_A 2uzy_A 2uzx_A 2wqv_A* 2wqw_A 2wqx_A 1d0b_A 1otn_A 1oto_A 1otm_A

Probab=99.69  E-value=7.6e-17  Score=144.25  Aligned_cols=173  Identities=30%  Similarity=0.318  Sum_probs=146.3

Q ss_pred             hcCCCCcEEECCCCCCChhHHHHhhcCCCccEEEccCCCCchHHHHHhhCCCCCCEEecCCCCCChHHHHHhhCCCCCCE
Q 012186          225 SALGSLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNLDSCGIGDEGLVNLTGLCNLKC  304 (469)
Q Consensus       225 ~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~L~~  304 (469)
                      ..+++|+.|++++|.+...  ..+..+++|+.|++++|.+.+..+  +..+++|+.|++++|.+...  ..+..+++|+.
T Consensus        43 ~~l~~L~~L~l~~~~i~~~--~~~~~l~~L~~L~L~~n~l~~~~~--l~~l~~L~~L~l~~n~l~~~--~~l~~l~~L~~  116 (291)
T 1h6t_A           43 NELNSIDQIIANNSDIKSV--QGIQYLPNVTKLFLNGNKLTDIKP--LANLKNLGWLFLDENKVKDL--SSLKDLKKLKS  116 (291)
T ss_dssp             HHHHTCCEEECTTSCCCCC--TTGGGCTTCCEEECCSSCCCCCGG--GTTCTTCCEEECCSSCCCCG--GGGTTCTTCCE
T ss_pred             hhcCcccEEEccCCCcccC--hhHhcCCCCCEEEccCCccCCCcc--cccCCCCCEEECCCCcCCCC--hhhccCCCCCE
Confidence            4578899999999988764  347889999999999999886544  88899999999999988763  34888999999


Q ss_pred             EeccCCCCChhhHHHhhCCCCCcEEecccCCCCchHHHhhhCCCCCcEEEccCCCCCHHHHHHHhcCCCCCEeecCCCCC
Q 012186          305 LELSDTQVGSSGLRHLSGLTNLESINLSFTGISDGSLRKLAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLFGARI  384 (469)
Q Consensus       305 L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~  384 (469)
                      |++++|.+...  ..+..+++|+.|++++|.+.+.  ..+..+++|+.|++++|.++...+  +..+++|+.|++++|.+
T Consensus       117 L~L~~n~i~~~--~~l~~l~~L~~L~l~~n~l~~~--~~l~~l~~L~~L~L~~N~l~~~~~--l~~l~~L~~L~L~~N~i  190 (291)
T 1h6t_A          117 LSLEHNGISDI--NGLVHLPQLESLYLGNNKITDI--TVLSRLTKLDTLSLEDNQISDIVP--LAGLTKLQNLYLSKNHI  190 (291)
T ss_dssp             EECTTSCCCCC--GGGGGCTTCCEEECCSSCCCCC--GGGGGCTTCSEEECCSSCCCCCGG--GTTCTTCCEEECCSSCC
T ss_pred             EECCCCcCCCC--hhhcCCCCCCEEEccCCcCCcc--hhhccCCCCCEEEccCCccccchh--hcCCCccCEEECCCCcC
Confidence            99999988774  4678899999999999988875  567889999999999999988654  88999999999999999


Q ss_pred             ChhHHHHhHcCCCCCeeeeCCCCCCHH
Q 012186          385 TDSGAAYLRNFKNLRSLEICGGGLTDA  411 (469)
Q Consensus       385 ~~~~~~~~~~~~~L~~L~l~~~~~~~~  411 (469)
                      ++..  .+..+++|+.|++++|.++..
T Consensus       191 ~~l~--~l~~l~~L~~L~l~~n~i~~~  215 (291)
T 1h6t_A          191 SDLR--ALAGLKNLDVLELFSQECLNK  215 (291)
T ss_dssp             CBCG--GGTTCTTCSEEEEEEEEEECC
T ss_pred             CCCh--hhccCCCCCEEECcCCcccCC
Confidence            8853  478899999999999887654

>1m9s_A Internalin B; cell invasion, GW domains, SH3 domains, signaling protein; 2.65A {Listeria monocytogenes} SCOP: b.1.18.15 b.34.11.1 b.34.11.1 b.34.11.1 c.10.2.1 PDB: 2y5q_A

Probab=99.68  E-value=2.2e-17  Score=161.74  Aligned_cols=173  Identities=28%  Similarity=0.362  Sum_probs=133.5

Q ss_pred             hhcCCCccEEEccCCCCchHHHHHhhCCCCCCEEecCCCCCChHHHHHhhCCCCCCEEeccCCCCChhhHHHhhCCCCCc
Q 012186          248 FSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNLDSCGIGDEGLVNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLE  327 (469)
Q Consensus       248 ~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~  327 (469)
                      +..+++|+.|+++++.+...  ..+..+++|+.|++++|.+....+  +..+++|+.|++++|.+....  .+..+++|+
T Consensus        39 ~~~L~~L~~L~l~~n~i~~l--~~l~~l~~L~~L~Ls~N~l~~~~~--l~~l~~L~~L~Ls~N~l~~l~--~l~~l~~L~  112 (605)
T 1m9s_A           39 QNELNSIDQIIANNSDIKSV--QGIQYLPNVTKLFLNGNKLTDIKP--LTNLKNLGWLFLDENKIKDLS--SLKDLKKLK  112 (605)
T ss_dssp             HHHHTTCCCCBCTTCCCCCC--TTGGGCTTCCEEECTTSCCCCCGG--GGGCTTCCEEECCSSCCCCCT--TSTTCTTCC
T ss_pred             hhcCCCCCEEECcCCCCCCC--hHHccCCCCCEEEeeCCCCCCChh--hccCCCCCEEECcCCCCCCCh--hhccCCCCC
Confidence            35667888888888887653  247788889999998888766443  778888888888888777632  577888888


Q ss_pred             EEecccCCCCchHHHhhhCCCCCcEEEccCCCCCHHHHHHHhcCCCCCEeecCCCCCChhHHHHhHcCCCCCeeeeCCCC
Q 012186          328 SINLSFTGISDGSLRKLAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLFGARITDSGAAYLRNFKNLRSLEICGGG  407 (469)
Q Consensus       328 ~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~  407 (469)
                      .|++++|.+...  ..+..+++|+.|++++|.++..  ..+..+++|+.|++++|.+.+..+  +..+++|+.|++++|.
T Consensus       113 ~L~Ls~N~l~~l--~~l~~l~~L~~L~Ls~N~l~~l--~~l~~l~~L~~L~Ls~N~l~~~~~--l~~l~~L~~L~Ls~N~  186 (605)
T 1m9s_A          113 SLSLEHNGISDI--NGLVHLPQLESLYLGNNKITDI--TVLSRLTKLDTLSLEDNQISDIVP--LAGLTKLQNLYLSKNH  186 (605)
T ss_dssp             EEECTTSCCCCC--GGGGGCTTCSEEECCSSCCCCC--GGGGSCTTCSEEECCSSCCCCCGG--GTTCTTCCEEECCSSC
T ss_pred             EEEecCCCCCCC--ccccCCCccCEEECCCCccCCc--hhhcccCCCCEEECcCCcCCCchh--hccCCCCCEEECcCCC
Confidence            888888887764  3577788888888888888775  567788888888888888887655  7778888888888888


Q ss_pred             CCHHHHHHHhcCCCCCeeeccCCCCCCh
Q 012186          408 LTDAGVKHIKDLSSLTLLNLSQNCNLTD  435 (469)
Q Consensus       408 ~~~~~~~~l~~~~~L~~L~l~~~~~l~~  435 (469)
                      +.+.  ..+..+++|+.|++++| .+..
T Consensus       187 i~~l--~~l~~l~~L~~L~L~~N-~l~~  211 (605)
T 1m9s_A          187 ISDL--RALAGLKNLDVLELFSQ-ECLN  211 (605)
T ss_dssp             CCBC--GGGTTCTTCSEEECCSE-EEEC
T ss_pred             CCCC--hHHccCCCCCEEEccCC-cCcC
Confidence            8775  24777888888888888 4444

>4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes}

Probab=99.66  E-value=1.7e-16  Score=133.41  Aligned_cols=147  Identities=25%  Similarity=0.353  Sum_probs=92.0

Q ss_pred             CCCCEEecCCCCCChHHHHHhhCCCCCCEEeccCCCCChhhHHHhhCCCCCcEEecccCCCCchHHHhhhCCCCCcEEEc
Q 012186          276 TNLESLNLDSCGIGDEGLVNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISDGSLRKLAGLSSLKSLNL  355 (469)
Q Consensus       276 ~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l  355 (469)
                      ++|+.|+++++.+....  .+..+++|++|++++|.+...  ..+..+++|++|++++|.+....+..+..+++|+.|++
T Consensus        44 ~~L~~L~l~~n~i~~l~--~l~~l~~L~~L~l~~n~~~~~--~~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~L  119 (197)
T 4ezg_A           44 NSLTYITLANINVTDLT--GIEYAHNIKDLTINNIHATNY--NPISGLSNLERLRIMGKDVTSDKIPNLSGLTSLTLLDI  119 (197)
T ss_dssp             HTCCEEEEESSCCSCCT--TGGGCTTCSEEEEESCCCSCC--GGGTTCTTCCEEEEECTTCBGGGSCCCTTCTTCCEEEC
T ss_pred             CCccEEeccCCCccChH--HHhcCCCCCEEEccCCCCCcc--hhhhcCCCCCEEEeECCccCcccChhhcCCCCCCEEEe
Confidence            34455555554443211  344455555555555543332  24556666666666666666555555666777777777


Q ss_pred             cCCCCCHHHHHHHhcCCCCCEeecCCCC-CChhHHHHhHcCCCCCeeeeCCCCCCHHHHHHHhcCCCCCeeeccCC
Q 012186          356 DARQITDTGLAALTSLTGLTHLDLFGAR-ITDSGAAYLRNFKNLRSLEICGGGLTDAGVKHIKDLSSLTLLNLSQN  430 (469)
Q Consensus       356 ~~~~~~~~~~~~l~~~~~L~~L~l~~~~-~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~  430 (469)
                      ++|.++...+..+..+++|++|++++|. +++. + .+..+++|+.|++++|.+++..  .+..+++|++|++++|
T Consensus       120 s~n~i~~~~~~~l~~l~~L~~L~L~~n~~i~~~-~-~l~~l~~L~~L~l~~n~i~~~~--~l~~l~~L~~L~l~~N  191 (197)
T 4ezg_A          120 SHSAHDDSILTKINTLPKVNSIDLSYNGAITDI-M-PLKTLPELKSLNIQFDGVHDYR--GIEDFPKLNQLYAFSQ  191 (197)
T ss_dssp             CSSBCBGGGHHHHTTCSSCCEEECCSCTBCCCC-G-GGGGCSSCCEEECTTBCCCCCT--TGGGCSSCCEEEECBC
T ss_pred             cCCccCcHhHHHHhhCCCCCEEEccCCCCcccc-H-hhcCCCCCCEEECCCCCCcChH--HhccCCCCCEEEeeCc
Confidence            7777776556667777777777777776 5553 2 5667777777777777777643  5667778888888877

>2o6s_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 1.50A {Eptatretus burgeri}

Probab=99.66  E-value=8.6e-18  Score=142.89  Aligned_cols=158  Identities=17%  Similarity=0.157  Sum_probs=69.4

Q ss_pred             CCCEEecCCCCCChHHHHHhhCCCCCCEEeccCCCCChhhHHHhhCCCCCcEEecccCCCCchHHHhhhCCCCCcEEEcc
Q 012186          277 NLESLNLDSCGIGDEGLVNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISDGSLRKLAGLSSLKSLNLD  356 (469)
Q Consensus       277 ~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~  356 (469)
                      +++.|+++++.+.......+..+++|++|++.+|.+.......+..+++|++|++++|.+....+..+..+++|+.|+++
T Consensus        29 ~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~  108 (208)
T 2o6s_A           29 QTTYLDLETNSLKSLPNGVFDELTSLTQLYLGGNKLQSLPNGVFNKLTSLTYLNLSTNQLQSLPNGVFDKLTQLKELALN  108 (208)
T ss_dssp             TCSEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECC
T ss_pred             CCcEEEcCCCccCcCChhhhcccccCcEEECCCCccCccChhhcCCCCCcCEEECCCCcCCccCHhHhcCccCCCEEEcC
Confidence            34444444443332222223334444444444444333333333444444444444444443333334444455555555


Q ss_pred             CCCCCHHHHHHHhcCCCCCEeecCCCCCChhHHHHhHcCCCCCeeeeCCCCCCHHHHHHHhcCCCCCeeeccCCCCCChh
Q 012186          357 ARQITDTGLAALTSLTGLTHLDLFGARITDSGAAYLRNFKNLRSLEICGGGLTDAGVKHIKDLSSLTLLNLSQNCNLTDK  436 (469)
Q Consensus       357 ~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~l~~~  436 (469)
                      +|.++......+..+++|++|++++|.+++..+..+..+++|+.|++++|.+..       .+++|++|+++.| .+++.
T Consensus       109 ~N~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~l~~N~~~~-------~~~~l~~L~~~~n-~~~g~  180 (208)
T 2o6s_A          109 TNQLQSLPDGVFDKLTQLKDLRLYQNQLKSVPDGVFDRLTSLQYIWLHDNPWDC-------TCPGIRYLSEWIN-KHSGV  180 (208)
T ss_dssp             SSCCCCCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSCCBCC-------CTTTTHHHHHHHH-HCTTT
T ss_pred             CCcCcccCHhHhccCCcCCEEECCCCccceeCHHHhccCCCccEEEecCCCeec-------CCCCHHHHHHHHH-hCCce
Confidence            544444333334445555555555555544444344445555555555554331       2444555555555 44444


Q ss_pred             HHHHHH
Q 012186          437 TLELIS  442 (469)
Q Consensus       437 ~~~~l~  442 (469)
                      .|..++
T Consensus       181 ip~~~~  186 (208)
T 2o6s_A          181 VRNSAG  186 (208)
T ss_dssp             BBCTTS
T ss_pred             eeccCc
Confidence            443333

>2xot_A Amphoterin-induced protein 1; cell adhesion, neuronal protein, neurite growth regulation; HET: NAG BMA; 2.00A {Mus musculus}

Probab=99.65  E-value=5.6e-17  Score=150.06  Aligned_cols=174  Identities=18%  Similarity=0.175  Sum_probs=106.0

Q ss_pred             cEEEccCCCCchHHHHHhhCCCCCCEEecCCCCCChHHHHHhh-CCCCCCEEeccCCCCChhhHHHhhCCCCCcEEeccc
Q 012186          255 KVLNLGFNEITDECLVHLKGLTNLESLNLDSCGIGDEGLVNLT-GLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSF  333 (469)
Q Consensus       255 ~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~-~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~  333 (469)
                      +.++++++.++. .|..+  .+.++.|++++|.+.......+. .+++|+.|++++|.+....+..+..+++|+.|++++
T Consensus        21 ~~l~c~~~~l~~-iP~~~--~~~l~~L~Ls~N~l~~l~~~~~~~~l~~L~~L~L~~N~i~~i~~~~~~~l~~L~~L~Ls~   97 (361)
T 2xot_A           21 NILSCSKQQLPN-VPQSL--PSYTALLDLSHNNLSRLRAEWTPTRLTNLHSLLLSHNHLNFISSEAFVPVPNLRYLDLSS   97 (361)
T ss_dssp             TEEECCSSCCSS-CCSSC--CTTCSEEECCSSCCCEECTTSSSSCCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCS
T ss_pred             CEEEeCCCCcCc-cCccC--CCCCCEEECCCCCCCccChhhhhhcccccCEEECCCCcCCccChhhccCCCCCCEEECCC
Confidence            466777666653 22222  23567777777776655444454 667777777777766665555566667777777777


Q ss_pred             CCCCchHHHhhhCCCCCcEEEccCCCCCHHHHHHHhcCCCCCEeecCCCCCChhHHHHh---HcCCCCCeeeeCCCCCCH
Q 012186          334 TGISDGSLRKLAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLFGARITDSGAAYL---RNFKNLRSLEICGGGLTD  410 (469)
Q Consensus       334 ~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~---~~~~~L~~L~l~~~~~~~  410 (469)
                      |.+....+..+..+++|+.|++++|.++...+..+..+++|+.|++++|.++...+..+   ..+++|+.|++++|.++.
T Consensus        98 N~l~~~~~~~~~~l~~L~~L~L~~N~i~~~~~~~~~~l~~L~~L~L~~N~l~~l~~~~~~~~~~l~~L~~L~L~~N~l~~  177 (361)
T 2xot_A           98 NHLHTLDEFLFSDLQALEVLLLYNNHIVVVDRNAFEDMAQLQKLYLSQNQISRFPVELIKDGNKLPKLMLLDLSSNKLKK  177 (361)
T ss_dssp             SCCCEECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCSCCGGGTC----CTTCCEEECCSSCCCC
T ss_pred             CcCCcCCHHHhCCCcCCCEEECCCCcccEECHHHhCCcccCCEEECCCCcCCeeCHHHhcCcccCCcCCEEECCCCCCCc
Confidence            76666555556666666666666666666555556666666666666666665444333   345666666666666665


Q ss_pred             HHHHHHhcCCC--CCeeeccCCC
Q 012186          411 AGVKHIKDLSS--LTLLNLSQNC  431 (469)
Q Consensus       411 ~~~~~l~~~~~--L~~L~l~~~~  431 (469)
                      ..+..+..++.  ++.|++++|+
T Consensus       178 l~~~~~~~l~~~~l~~l~l~~N~  200 (361)
T 2xot_A          178 LPLTDLQKLPAWVKNGLYLHNNP  200 (361)
T ss_dssp             CCHHHHHHSCHHHHTTEECCSSC
T ss_pred             cCHHHhhhccHhhcceEEecCCC
Confidence            55555555554  3566666663

>1m9s_A Internalin B; cell invasion, GW domains, SH3 domains, signaling protein; 2.65A {Listeria monocytogenes} SCOP: b.1.18.15 b.34.11.1 b.34.11.1 b.34.11.1 c.10.2.1 PDB: 2y5q_A

Probab=99.65  E-value=7.4e-17  Score=158.07  Aligned_cols=189  Identities=31%  Similarity=0.306  Sum_probs=156.1

Q ss_pred             CeeeccCCCCchhhHHhhhcCCCCcEEECCCCCCChhHHHHhhcCCCccEEEccCCCCchHHHHHhhCCCCCCEEecCCC
Q 012186          207 TLLNLEGCPVTAACLDSLSALGSLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNLDSC  286 (469)
Q Consensus       207 ~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~  286 (469)
                      ..+.+..+.+....  .+..+++|+.|++.++.+...  ..+..+++|+.|++++|.+.+..+  +..+++|+.|++++|
T Consensus        24 ~~l~l~~~~i~~~~--~~~~L~~L~~L~l~~n~i~~l--~~l~~l~~L~~L~Ls~N~l~~~~~--l~~l~~L~~L~Ls~N   97 (605)
T 1m9s_A           24 IKDNLKKKSVTDAV--TQNELNSIDQIIANNSDIKSV--QGIQYLPNVTKLFLNGNKLTDIKP--LTNLKNLGWLFLDEN   97 (605)
T ss_dssp             HHHHTTCSCTTSEE--CHHHHTTCCCCBCTTCCCCCC--TTGGGCTTCCEEECTTSCCCCCGG--GGGCTTCCEEECCSS
T ss_pred             HHHhccCCCccccc--chhcCCCCCEEECcCCCCCCC--hHHccCCCCCEEEeeCCCCCCChh--hccCCCCCEEECcCC
Confidence            33444444444322  245678999999999988764  357889999999999999887544  889999999999999


Q ss_pred             CCChHHHHHhhCCCCCCEEeccCCCCChhhHHHhhCCCCCcEEecccCCCCchHHHhhhCCCCCcEEEccCCCCCHHHHH
Q 012186          287 GIGDEGLVNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISDGSLRKLAGLSSLKSLNLDARQITDTGLA  366 (469)
Q Consensus       287 ~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~  366 (469)
                      .+...  +.+..+++|+.|++++|.+...  ..+..+++|+.|++++|.+...  ..+..+++|+.|++++|.+....+ 
T Consensus        98 ~l~~l--~~l~~l~~L~~L~Ls~N~l~~l--~~l~~l~~L~~L~Ls~N~l~~l--~~l~~l~~L~~L~Ls~N~l~~~~~-  170 (605)
T 1m9s_A           98 KIKDL--SSLKDLKKLKSLSLEHNGISDI--NGLVHLPQLESLYLGNNKITDI--TVLSRLTKLDTLSLEDNQISDIVP-  170 (605)
T ss_dssp             CCCCC--TTSTTCTTCCEEECTTSCCCCC--GGGGGCTTCSEEECCSSCCCCC--GGGGSCTTCSEEECCSSCCCCCGG-
T ss_pred             CCCCC--hhhccCCCCCEEEecCCCCCCC--ccccCCCccCEEECCCCccCCc--hhhcccCCCCEEECcCCcCCCchh-
Confidence            88753  3688899999999999988864  4588999999999999998875  568899999999999999988655 


Q ss_pred             HHhcCCCCCEeecCCCCCChhHHHHhHcCCCCCeeeeCCCCCCHH
Q 012186          367 ALTSLTGLTHLDLFGARITDSGAAYLRNFKNLRSLEICGGGLTDA  411 (469)
Q Consensus       367 ~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~  411 (469)
                       +..+++|+.|++++|.+++.  ..+..+++|+.|++++|.+.+.
T Consensus       171 -l~~l~~L~~L~Ls~N~i~~l--~~l~~l~~L~~L~L~~N~l~~~  212 (605)
T 1m9s_A          171 -LAGLTKLQNLYLSKNHISDL--RALAGLKNLDVLELFSQECLNK  212 (605)
T ss_dssp             -GTTCTTCCEEECCSSCCCBC--GGGTTCTTCSEEECCSEEEECC
T ss_pred             -hccCCCCCEEECcCCCCCCC--hHHccCCCCCEEEccCCcCcCC
Confidence             88999999999999999985  4688899999999999988764

>3sb4_A Hypothetical leucine rich repeat protein; LRR, right-handed beta-alpha superhelix, leucine-rich repeat structural genomics; HET: MSE PG4; 1.99A {Bacteroides thetaiotaomicron}

Probab=99.63  E-value=3.3e-17  Score=149.67  Aligned_cols=283  Identities=14%  Similarity=0.090  Sum_probs=122.0

Q ss_pred             CCCCEEecccccccccccccccC-CCCccEEEccCCCCCChhhhhcccCCCCCCEEEecccccChhhhhhccC-------
Q 012186          131 INLVKLDLERCTRIHGGLVNLKG-LMKLESLNIKWCNCITDSDMKPLSGLTNLKSLQISCSKVTDSGIAYLKG-------  202 (469)
Q Consensus       131 ~~L~~L~l~~~~~~~~~~~~l~~-l~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~-------  202 (469)
                      .+++.|.+++.- .......+.. +++|++|+++++.. .... ..-+.++.++.+.+..+.+.   ...|.+       
T Consensus        25 ~~l~~L~l~g~i-~~~~~~~l~~~l~~L~~LdLs~n~i-~~~~-~~~~~~~~~~~~~~~~~~I~---~~aF~~~~~~~~~   98 (329)
T 3sb4_A           25 NSITHLTLTGKL-NAEDFRHLRDEFPSLKVLDISNAEI-KMYS-GKAGTYPNGKFYIYMANFVP---AYAFSNVVNGVTK   98 (329)
T ss_dssp             HHCSEEEEEEEE-CHHHHHHHHHSCTTCCEEEEEEEEE-CCEE-ESSSSSGGGCCEEECTTEEC---TTTTEEEETTEEE
T ss_pred             CceeEEEEeccc-cHHHHHHHHHhhccCeEEecCccee-EEec-CccccccccccccccccccC---HHHhccccccccc
Confidence            466777776531 1111222333 66777777776432 2000 00011222333333333222   234455       


Q ss_pred             -CCCCCeeeccCCCCchhhHHhhhcCCCCcEEECCCCCCChhHHHHhhcCCCccEEEccCCCC----chHHHHHhhCCCC
Q 012186          203 -LQKLTLLNLEGCPVTAACLDSLSALGSLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEI----TDECLVHLKGLTN  277 (469)
Q Consensus       203 -l~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~----~~~~~~~~~~l~~  277 (469)
                       +++|+.+.+.+ .++.....+|.++++|+.+++..+.+.......|..+.++..+.......    .......+..+..
T Consensus        99 g~~~L~~l~L~~-~i~~I~~~aF~~~~~L~~l~l~~n~i~~i~~~aF~~~~~l~~l~~~~~~~~~~~~~i~~~~f~~~~~  177 (329)
T 3sb4_A           99 GKQTLEKVILSE-KIKNIEDAAFKGCDNLKICQIRKKTAPNLLPEALADSVTAIFIPLGSSDAYRFKNRWEHFAFIEGEP  177 (329)
T ss_dssp             ECTTCCC-CBCT-TCCEECTTTTTTCTTCCEEEBCCSSCCEECTTSSCTTTCEEEECTTCTHHHHTSTTTTTSCEEESCC
T ss_pred             ccCCCcEEECCc-cccchhHHHhhcCcccceEEcCCCCccccchhhhcCCCceEEecCcchhhhhccccccccccccccc
Confidence             77777777766 55555556677777777777777666555555555555555554433110    0000111233344


Q ss_pred             CC-EEecCCCCCChHHHHHhh---CCCCCCEEeccCCCCChhhHHHhh-CCCCCcEEecccCCCCchHHHhhhCCCCCcE
Q 012186          278 LE-SLNLDSCGIGDEGLVNLT---GLCNLKCLELSDTQVGSSGLRHLS-GLTNLESINLSFTGISDGSLRKLAGLSSLKS  352 (469)
Q Consensus       278 L~-~L~l~~~~~~~~~~~~~~---~~~~L~~L~l~~~~~~~~~~~~~~-~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~  352 (469)
                      |+ .+.+.....  .....+.   ...++..+.+.+.- .......+. .+++|+.+++++|.+......+|.++++|+.
T Consensus       178 L~~~i~~~~~~~--l~~~~~~~~~~~~~~~~l~~~~~l-~~~~~~~l~~~~~~L~~l~L~~n~i~~I~~~aF~~~~~L~~  254 (329)
T 3sb4_A          178 LETTIQVGAMGK--LEDEIMKAGLQPRDINFLTIEGKL-DNADFKLIRDYMPNLVSLDISKTNATTIPDFTFAQKKYLLK  254 (329)
T ss_dssp             CEEEEEECTTCC--HHHHHHHTTCCGGGCSEEEEEECC-CHHHHHHHHHHCTTCCEEECTTBCCCEECTTTTTTCTTCCE
T ss_pred             cceeEEecCCCc--HHHHHhhcccCccccceEEEeeee-cHHHHHHHHHhcCCCeEEECCCCCcceecHhhhhCCCCCCE
Confidence            44 233322211  1111111   12334444443331 111111111 2444555555444444444444444444444


Q ss_pred             EEccCCCCCHHHHHHHhcCCCCC-EeecCCCCCChhHHHHhHcCCCCCeeeeCCCCCCHHHHHHHhcCCCCCee
Q 012186          353 LNLDARQITDTGLAALTSLTGLT-HLDLFGARITDSGAAYLRNFKNLRSLEICGGGLTDAGVKHIKDLSSLTLL  425 (469)
Q Consensus       353 L~l~~~~~~~~~~~~l~~~~~L~-~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L  425 (469)
                      +.+.++ ++.....+|.+|++|+ .+++.+ .++.+.+.+|.+|++|+.+++.++.++.+....|.++++|+.+
T Consensus       255 l~l~~n-i~~I~~~aF~~~~~L~~~l~l~~-~l~~I~~~aF~~c~~L~~l~l~~n~i~~I~~~aF~~~~~L~~l  326 (329)
T 3sb4_A          255 IKLPHN-LKTIGQRVFSNCGRLAGTLELPA-SVTAIEFGAFMGCDNLRYVLATGDKITTLGDELFGNGVPSKLI  326 (329)
T ss_dssp             EECCTT-CCEECTTTTTTCTTCCEEEEECT-TCCEECTTTTTTCTTEEEEEECSSCCCEECTTTTCTTCCCCEE
T ss_pred             EECCcc-cceehHHHhhCChhccEEEEEcc-cceEEchhhhhCCccCCEEEeCCCccCccchhhhcCCcchhhh
Confidence            444443 3333334444444444 444444 3433333444444444444444444444434444444444443

>2o6s_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 1.50A {Eptatretus burgeri}

Probab=99.63  E-value=6.9e-17  Score=137.28  Aligned_cols=131  Identities=24%  Similarity=0.197  Sum_probs=49.9

Q ss_pred             CCcEEECCCCCCChhHHHHhhcCCCccEEEccCCCCchHHHHHhhCCCCCCEEecCCCCCChHHHHHhhCCCCCCEEecc
Q 012186          229 SLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNLDSCGIGDEGLVNLTGLCNLKCLELS  308 (469)
Q Consensus       229 ~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~  308 (469)
                      ++++|++++|.+.......+..+++|+.|++++|.+....+..+..+++|++|++++|.+.......+..+++|++|+++
T Consensus        29 ~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~  108 (208)
T 2o6s_A           29 QTTYLDLETNSLKSLPNGVFDELTSLTQLYLGGNKLQSLPNGVFNKLTSLTYLNLSTNQLQSLPNGVFDKLTQLKELALN  108 (208)
T ss_dssp             TCSEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECC
T ss_pred             CCcEEEcCCCccCcCChhhhcccccCcEEECCCCccCccChhhcCCCCCcCEEECCCCcCCccCHhHhcCccCCCEEEcC
Confidence            33344444333333222223333444444444443332222223334444444444443332222223334444444444


Q ss_pred             CCCCChhhHHHhhCCCCCcEEecccCCCCchHHHhhhCCCCCcEEEccCCC
Q 012186          309 DTQVGSSGLRHLSGLTNLESINLSFTGISDGSLRKLAGLSSLKSLNLDARQ  359 (469)
Q Consensus       309 ~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~  359 (469)
                      +|.+.......+..+++|+.|++++|.+....+..+..+++|+.|++++|.
T Consensus       109 ~N~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~l~~N~  159 (208)
T 2o6s_A          109 TNQLQSLPDGVFDKLTQLKDLRLYQNQLKSVPDGVFDRLTSLQYIWLHDNP  159 (208)
T ss_dssp             SSCCCCCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSCC
T ss_pred             CCcCcccCHhHhccCCcCCEEECCCCccceeCHHHhccCCCccEEEecCCC
Confidence            443333222223334444444444444433333333334444444444443

>3sb4_A Hypothetical leucine rich repeat protein; LRR, right-handed beta-alpha superhelix, leucine-rich repeat structural genomics; HET: MSE PG4; 1.99A {Bacteroides thetaiotaomicron}

Probab=99.63  E-value=1.4e-16  Score=145.52  Aligned_cols=124  Identities=18%  Similarity=0.193  Sum_probs=72.5

Q ss_pred             CCCCEEecCCCCCChHHHHHhh-CCCCCCEEeccCCCCChhhHHHhhCCCCCcEEecccCCCCchHHHhhhCCCCCc-EE
Q 012186          276 TNLESLNLDSCGIGDEGLVNLT-GLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISDGSLRKLAGLSSLK-SL  353 (469)
Q Consensus       276 ~~L~~L~l~~~~~~~~~~~~~~-~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~-~L  353 (469)
                      .+++.+.+.+. +.......+. .+++|+.+++.+|.+.......|.+|++|+.+.++.+ +......+|.++++|+ .+
T Consensus       202 ~~~~~l~~~~~-l~~~~~~~l~~~~~~L~~l~L~~n~i~~I~~~aF~~~~~L~~l~l~~n-i~~I~~~aF~~~~~L~~~l  279 (329)
T 3sb4_A          202 RDINFLTIEGK-LDNADFKLIRDYMPNLVSLDISKTNATTIPDFTFAQKKYLLKIKLPHN-LKTIGQRVFSNCGRLAGTL  279 (329)
T ss_dssp             GGCSEEEEEEC-CCHHHHHHHHHHCTTCCEEECTTBCCCEECTTTTTTCTTCCEEECCTT-CCEECTTTTTTCTTCCEEE
T ss_pred             cccceEEEeee-ecHHHHHHHHHhcCCCeEEECCCCCcceecHhhhhCCCCCCEEECCcc-cceehHHHhhCChhccEEE
Confidence            44555555443 2222222222 3566666666665555555555666666666666655 5555555666666666 66


Q ss_pred             EccCCCCCHHHHHHHhcCCCCCEeecCCCCCChhHHHHhHcCCCCCeee
Q 012186          354 NLDARQITDTGLAALTSLTGLTHLDLFGARITDSGAAYLRNFKNLRSLE  402 (469)
Q Consensus       354 ~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~  402 (469)
                      .+.+ .++.....+|.+|++|+.+++.++.++...+.+|.++++|+.++
T Consensus       280 ~l~~-~l~~I~~~aF~~c~~L~~l~l~~n~i~~I~~~aF~~~~~L~~ly  327 (329)
T 3sb4_A          280 ELPA-SVTAIEFGAFMGCDNLRYVLATGDKITTLGDELFGNGVPSKLIY  327 (329)
T ss_dssp             EECT-TCCEECTTTTTTCTTEEEEEECSSCCCEECTTTTCTTCCCCEEE
T ss_pred             EEcc-cceEEchhhhhCCccCCEEEeCCCccCccchhhhcCCcchhhhc
Confidence            6665 55555556666667777777666666666666666666666654

>2v9t_B SLIT homolog 2 protein N-product; structural protein-receptor complex, developmental protein, domain, roundabout, chemotaxis, LRR domain; 1.70A {Homo sapiens} PDB: 2v9s_A

Probab=99.63  E-value=4.1e-17  Score=139.56  Aligned_cols=150  Identities=22%  Similarity=0.239  Sum_probs=124.0

Q ss_pred             CEEecCCCCCChHHHHHhhCCCCCCEEeccCCCCChhhHHHhhCCCCCcEEecccCCCCchHHHhhhCCCCCcEEEccCC
Q 012186          279 ESLNLDSCGIGDEGLVNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISDGSLRKLAGLSSLKSLNLDAR  358 (469)
Q Consensus       279 ~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~  358 (469)
                      +.++.+++.+...+ ..+  .++++.|++.+|.+....+..+..+++|+.|++++|.+....+..+..+++|+.|++++|
T Consensus        14 ~~v~c~~~~l~~iP-~~l--~~~l~~L~l~~n~i~~i~~~~~~~l~~L~~L~Ls~N~i~~~~~~~~~~l~~L~~L~Ls~N   90 (220)
T 2v9t_B           14 NIVDCRGKGLTEIP-TNL--PETITEIRLEQNTIKVIPPGAFSPYKKLRRIDLSNNQISELAPDAFQGLRSLNSLVLYGN   90 (220)
T ss_dssp             TEEECTTSCCSSCC-SSC--CTTCCEEECCSSCCCEECTTSSTTCTTCCEEECCSSCCCEECTTTTTTCSSCCEEECCSS
T ss_pred             CEEEcCCCCcCcCC-Ccc--CcCCCEEECCCCcCCCcCHhHhhCCCCCCEEECCCCcCCCcCHHHhhCCcCCCEEECCCC
Confidence            56777777665432 122  358899999999888777667888899999999999988877788888999999999999


Q ss_pred             CCCHHHHHHHhcCCCCCEeecCCCCCChhHHHHhHcCCCCCeeeeCCCCCCHHHHHHHhcCCCCCeeeccCCC
Q 012186          359 QITDTGLAALTSLTGLTHLDLFGARITDSGAAYLRNFKNLRSLEICGGGLTDAGVKHIKDLSSLTLLNLSQNC  431 (469)
Q Consensus       359 ~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~  431 (469)
                      .++......+..+++|++|++++|.+++..+..+..+++|+.|++++|.++...+..+..+++|++|++++|+
T Consensus        91 ~l~~l~~~~f~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~  163 (220)
T 2v9t_B           91 KITELPKSLFEGLFSLQLLLLNANKINCLRVDAFQDLHNLNLLSLYDNKLQTIAKGTFSPLRAIQTMHLAQNP  163 (220)
T ss_dssp             CCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSC
T ss_pred             cCCccCHhHccCCCCCCEEECCCCCCCEeCHHHcCCCCCCCEEECCCCcCCEECHHHHhCCCCCCEEEeCCCC
Confidence            9887766667788999999999999988878888888999999999999888877778888899999999985

>2v70_A SLIT-2, SLIT homolog 2 protein N-product; neurogenesis, glycoprotein, secreted, chemotaxis, LRR structural protein, differentiation; HET: NAG; 3.01A {Homo sapiens}

Probab=99.62  E-value=8.1e-17  Score=137.74  Aligned_cols=150  Identities=20%  Similarity=0.221  Sum_probs=119.4

Q ss_pred             CEEecCCCCCChHHHHHhhCCCCCCEEeccCCCCChhhH-HHhhCCCCCcEEecccCCCCchHHHhhhCCCCCcEEEccC
Q 012186          279 ESLNLDSCGIGDEGLVNLTGLCNLKCLELSDTQVGSSGL-RHLSGLTNLESINLSFTGISDGSLRKLAGLSSLKSLNLDA  357 (469)
Q Consensus       279 ~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~-~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~  357 (469)
                      +.++++++.++..+ ..+  .+.++.|++++|.+....+ ..+..+++|+.|++++|.+....+..+..+++|+.|++++
T Consensus        14 ~~l~~s~n~l~~iP-~~~--~~~~~~L~L~~N~l~~~~~~~~~~~l~~L~~L~L~~N~i~~i~~~~~~~l~~L~~L~Ls~   90 (220)
T 2v70_A           14 TTVDCSNQKLNKIP-EHI--PQYTAELRLNNNEFTVLEATGIFKKLPQLRKINFSNNKITDIEEGAFEGASGVNEILLTS   90 (220)
T ss_dssp             TEEECCSSCCSSCC-SCC--CTTCSEEECCSSCCCEECCCCCGGGCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCS
T ss_pred             CEeEeCCCCcccCc-cCC--CCCCCEEEcCCCcCCccCchhhhccCCCCCEEECCCCcCCEECHHHhCCCCCCCEEECCC
Confidence            57888888776432 222  3467889998888876533 3467888899999988888877777788888889999988


Q ss_pred             CCCCHHHHHHHhcCCCCCEeecCCCCCChhHHHHhHcCCCCCeeeeCCCCCCHHHHHHHhcCCCCCeeeccCCC
Q 012186          358 RQITDTGLAALTSLTGLTHLDLFGARITDSGAAYLRNFKNLRSLEICGGGLTDAGVKHIKDLSSLTLLNLSQNC  431 (469)
Q Consensus       358 ~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~  431 (469)
                      |.++...+..+..+++|++|++++|.+++..+..+..+++|+.|++++|.+++..|..|..+++|+.|++++|+
T Consensus        91 N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~  164 (220)
T 2v70_A           91 NRLENVQHKMFKGLESLKTLMLRSNRITCVGNDSFIGLSSVRLLSLYDNQITTVAPGAFDTLHSLSTLNLLANP  164 (220)
T ss_dssp             SCCCCCCGGGGTTCSSCCEEECTTSCCCCBCTTSSTTCTTCSEEECTTSCCCCBCTTTTTTCTTCCEEECCSCC
T ss_pred             CccCccCHhHhcCCcCCCEEECCCCcCCeECHhHcCCCccCCEEECCCCcCCEECHHHhcCCCCCCEEEecCcC
Confidence            88888777778888888888888888888777788888888888888888888777778888888888888884

>3un9_A NLR family member X1; leucine rich repeat (LRR), antiviral signaling, MAVS, TRAF6, UQCRC2, immune system; 2.65A {Homo sapiens}

Probab=99.62  E-value=5.9e-15  Score=136.15  Aligned_cols=190  Identities=23%  Similarity=0.328  Sum_probs=143.7

Q ss_pred             CCCCCEEecCCCCCChHHHHHhhC-----CCCCCEEeccCCCCChhhHHHhh-CCCCCcEEecccCCCCchHHHhhh---
Q 012186          275 LTNLESLNLDSCGIGDEGLVNLTG-----LCNLKCLELSDTQVGSSGLRHLS-GLTNLESINLSFTGISDGSLRKLA---  345 (469)
Q Consensus       275 l~~L~~L~l~~~~~~~~~~~~~~~-----~~~L~~L~l~~~~~~~~~~~~~~-~~~~L~~L~l~~~~~~~~~~~~~~---  345 (469)
                      .+.|+.|++++|.++......+..     .++|++|++++|.++......+. .+++|+.|++++|.+++.....+.   
T Consensus        71 ~~~L~~L~Ls~n~l~~~~~~~l~~~L~~~~~~L~~L~Ls~n~l~~~~~~~l~~~L~~L~~L~Ls~n~l~~~~~~~L~~~L  150 (372)
T 3un9_A           71 LSSLRQLNLAGVRMTPVKCTVVAAVLGSGRHALDEVNLASCQLDPAGLRTLLPVFLRARKLGLQLNSLGPEACKDLRDLL  150 (372)
T ss_dssp             HTTCCEEECTTSCCCHHHHHHHHHHHSSCSSCEEEEECTTCCCCHHHHHHTHHHHHTEEEEECCSSCCCHHHHHHHHHHH
T ss_pred             HhhCCEEEecCCCCCHHHHHHHHHHHhhCCCCceEEEecCCCCCHHHHHHHHHHHHhccHhhcCCCCCCHHHHHHHHHHH
Confidence            467999999999998766655442     36899999999998876655543 567899999999999887766653   


Q ss_pred             --CCCCCcEEEccCCCCCHHHHHH----HhcCCCCCEeecCCCCCChhH----HHHhHcCCCCCeeeeCCCCCCHHHHHH
Q 012186          346 --GLSSLKSLNLDARQITDTGLAA----LTSLTGLTHLDLFGARITDSG----AAYLRNFKNLRSLEICGGGLTDAGVKH  415 (469)
Q Consensus       346 --~~~~L~~L~l~~~~~~~~~~~~----l~~~~~L~~L~l~~~~~~~~~----~~~~~~~~~L~~L~l~~~~~~~~~~~~  415 (469)
                        ..++|+.|++++|.++..+...    +..+++|++|++++|.+++..    +..+..+++|+.|++++|.+++.....
T Consensus       151 ~~~~~~L~~L~Ls~n~l~~~~~~~l~~~L~~~~~L~~L~Ls~N~l~~~g~~~L~~~L~~~~~L~~L~Ls~N~i~~~g~~~  230 (372)
T 3un9_A          151 LHDQCQITTLRLSNNPLTAAGVAVLMEGLAGNTSVTHLSLLHTGLGDEGLELLAAQLDRNRQLQELNVAYNGAGDTAALA  230 (372)
T ss_dssp             HSTTCCCCEEECCSSCCHHHHHHHHHHHHHTCSSCCEEECTTSSCHHHHHHHHHHHGGGCSCCCEEECCSSCCCHHHHHH
T ss_pred             HhcCCccceeeCCCCCCChHHHHHHHHHHhcCCCcCEEeCCCCCCCcHHHHHHHHHHhcCCCcCeEECCCCCCCHHHHHH
Confidence              4688999999999998755444    367889999999999988765    455677889999999999998865544


Q ss_pred             H----hcCCCCCeeeccCCCCCChhHHHHHHhCc--c---ccccc--ccCCCCCHHHHHhh
Q 012186          416 I----KDLSSLTLLNLSQNCNLTDKTLELISGLT--G---LVSLN--VSNSRITSAGLRHL  465 (469)
Q Consensus       416 l----~~~~~L~~L~l~~~~~l~~~~~~~l~~l~--~---L~~L~--l~~~~~~~~~~~~l  465 (469)
                      +    ..+++|++|++++| .++......+..+.  .   |+.+.  +..+.+++.....+
T Consensus       231 l~~~L~~~~~L~~L~Ls~N-~i~~~g~~~L~~~~~~~~~~L~~l~~ll~~~~~~~~~~~~l  290 (372)
T 3un9_A          231 LARAAREHPSLELLHLYFN-ELSSEGRQVLRDLGGAAEGGARVVVSLTEGTAVSEYWSVIL  290 (372)
T ss_dssp             HHHHHHHCSSCCEEECTTS-SCCHHHHHHHHHCC------CEEECCCC----CHHHHHHHH
T ss_pred             HHHHHHhCCCCCEEeccCC-CCCHHHHHHHHHHhcCCCccchhhHhhhcCCccCHHHHHHH
Confidence            3    45789999999999 78888887776542  2   77777  77788877654443

>4ay9_X Follicle-stimulating hormone receptor; hormone-receptor complex, leucine-rich repeats, LRR, GPCR; HET: TYS NAG; 2.50A {Homo sapiens} PDB: 1xwd_C*

Probab=99.61  E-value=8.2e-18  Score=155.03  Aligned_cols=240  Identities=18%  Similarity=0.137  Sum_probs=167.9

Q ss_pred             CEEEecccccChhhhhhccCCCCCCeeeccCCCCchhhHHhhhcCCCCcEEECCCCCCChh-HHHHhhcCCCccE-EEcc
Q 012186          183 KSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACLDSLSALGSLFYLNLNRCQLSDD-GCEKFSKIGSLKV-LNLG  260 (469)
Q Consensus       183 ~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~-~~~~~~~~~~L~~-L~l~  260 (469)
                      +.++.+++.++..+. .+  .+++++|++++|+++...+..|.++++|++|++++|.+... ....|..++++.. +.+.
T Consensus        12 ~~v~C~~~~Lt~iP~-~l--~~~l~~L~Ls~N~i~~i~~~~f~~l~~L~~L~Ls~N~i~~~i~~~~f~~L~~l~~~l~~~   88 (350)
T 4ay9_X           12 RVFLCQESKVTEIPS-DL--PRNAIELRFVLTKLRVIQKGAFSGFGDLEKIEISQNDVLEVIEADVFSNLPKLHEIRIEK   88 (350)
T ss_dssp             TEEEEESTTCCSCCT-TC--CTTCSEEEEESCCCSEECTTSSTTCTTCCEEEEECCTTCCEECTTSBCSCTTCCEEEEEE
T ss_pred             CEEEecCCCCCccCc-Cc--CCCCCEEEccCCcCCCcCHHHHcCCCCCCEEECcCCCCCCccChhHhhcchhhhhhhccc
Confidence            456677777775432 22  36799999999999887667889999999999999987543 3346777888765 4555


Q ss_pred             CCCCchHHHHHhhCCCCCCEEecCCCCCChHHHHHhhCCCCCCEEeccCC-CCChhhHHHhhCC-CCCcEEecccCCCCc
Q 012186          261 FNEITDECLVHLKGLTNLESLNLDSCGIGDEGLVNLTGLCNLKCLELSDT-QVGSSGLRHLSGL-TNLESINLSFTGISD  338 (469)
Q Consensus       261 ~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~-~~~~~~~~~~~~~-~~L~~L~l~~~~~~~  338 (469)
                      +|.+....+..+..+++|+.|++++|.+.......+....++..+++.++ .+.......+..+ ..++.|.+++|.+..
T Consensus        89 ~N~l~~l~~~~f~~l~~L~~L~l~~n~l~~~~~~~~~~~~~l~~l~l~~~~~i~~l~~~~f~~~~~~l~~L~L~~N~i~~  168 (350)
T 4ay9_X           89 ANNLLYINPEAFQNLPNLQYLLISNTGIKHLPDVHKIHSLQKVLLDIQDNINIHTIERNSFVGLSFESVILWLNKNGIQE  168 (350)
T ss_dssp             ETTCCEECTTSBCCCTTCCEEEEEEECCSSCCCCTTCCBSSCEEEEEESCTTCCEECTTSSTTSBSSCEEEECCSSCCCE
T ss_pred             CCcccccCchhhhhccccccccccccccccCCchhhcccchhhhhhhccccccccccccchhhcchhhhhhccccccccC
Confidence            67777666777888999999999998876554444445556777887654 4554444444544 468888998888876


Q ss_pred             hHHHhhhCCCCCcEEEccC-CCCCHHHHHHHhcCCCCCEeecCCCCCChhHHHHhHcCCCCCeeeeCCCCCCHHHHHHHh
Q 012186          339 GSLRKLAGLSSLKSLNLDA-RQITDTGLAALTSLTGLTHLDLFGARITDSGAAYLRNFKNLRSLEICGGGLTDAGVKHIK  417 (469)
Q Consensus       339 ~~~~~~~~~~~L~~L~l~~-~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~  417 (469)
                      .....+ ...+|+.+.+.+ +.++......+..+++|++|++++|+++...+..   +..|+.|.+.++.-....| .+.
T Consensus       169 i~~~~f-~~~~L~~l~l~~~n~l~~i~~~~f~~l~~L~~LdLs~N~l~~lp~~~---~~~L~~L~~l~~~~l~~lP-~l~  243 (350)
T 4ay9_X          169 IHNSAF-NGTQLDELNLSDNNNLEELPNDVFHGASGPVILDISRTRIHSLPSYG---LENLKKLRARSTYNLKKLP-TLE  243 (350)
T ss_dssp             ECTTSS-TTEEEEEEECTTCTTCCCCCTTTTTTEECCSEEECTTSCCCCCCSSS---CTTCCEEECTTCTTCCCCC-CTT
T ss_pred             CChhhc-cccchhHHhhccCCcccCCCHHHhccCcccchhhcCCCCcCccChhh---hccchHhhhccCCCcCcCC-Cch
Confidence            544333 446788888875 6677666667788888999999998888765433   4556666655543322234 366


Q ss_pred             cCCCCCeeeccCC
Q 012186          418 DLSSLTLLNLSQN  430 (469)
Q Consensus       418 ~~~~L~~L~l~~~  430 (469)
                      .+++|+.+++.++
T Consensus       244 ~l~~L~~l~l~~~  256 (350)
T 4ay9_X          244 KLVALMEASLTYP  256 (350)
T ss_dssp             TCCSCCEEECSCH
T ss_pred             hCcChhhCcCCCC
Confidence            7888888888764

>3un9_A NLR family member X1; leucine rich repeat (LRR), antiviral signaling, MAVS, TRAF6, UQCRC2, immune system; 2.65A {Homo sapiens}

Probab=99.61  E-value=1.1e-14  Score=134.44  Aligned_cols=184  Identities=23%  Similarity=0.310  Sum_probs=140.4

Q ss_pred             CCCccEEEccCCCCchHHHHHhh-----CCCCCCEEecCCCCCChHHHHHhh-CCCCCCEEeccCCCCChhhHHHhh---
Q 012186          251 IGSLKVLNLGFNEITDECLVHLK-----GLTNLESLNLDSCGIGDEGLVNLT-GLCNLKCLELSDTQVGSSGLRHLS---  321 (469)
Q Consensus       251 ~~~L~~L~l~~~~~~~~~~~~~~-----~l~~L~~L~l~~~~~~~~~~~~~~-~~~~L~~L~l~~~~~~~~~~~~~~---  321 (469)
                      ++.|+.|++++|.++......+.     ..++|+.|++++|.++......+. .+++|+.|++++|.++......+.   
T Consensus        71 ~~~L~~L~Ls~n~l~~~~~~~l~~~L~~~~~~L~~L~Ls~n~l~~~~~~~l~~~L~~L~~L~Ls~n~l~~~~~~~L~~~L  150 (372)
T 3un9_A           71 LSSLRQLNLAGVRMTPVKCTVVAAVLGSGRHALDEVNLASCQLDPAGLRTLLPVFLRARKLGLQLNSLGPEACKDLRDLL  150 (372)
T ss_dssp             HTTCCEEECTTSCCCHHHHHHHHHHHSSCSSCEEEEECTTCCCCHHHHHHTHHHHHTEEEEECCSSCCCHHHHHHHHHHH
T ss_pred             HhhCCEEEecCCCCCHHHHHHHHHHHhhCCCCceEEEecCCCCCHHHHHHHHHHHHhccHhhcCCCCCCHHHHHHHHHHH
Confidence            57899999999999875544442     236899999999999876665554 467899999999999887766653   


Q ss_pred             --CCCCCcEEecccCCCCchHHHhh----hCCCCCcEEEccCCCCCHHHH----HHHhcCCCCCEeecCCCCCChhHHH-
Q 012186          322 --GLTNLESINLSFTGISDGSLRKL----AGLSSLKSLNLDARQITDTGL----AALTSLTGLTHLDLFGARITDSGAA-  390 (469)
Q Consensus       322 --~~~~L~~L~l~~~~~~~~~~~~~----~~~~~L~~L~l~~~~~~~~~~----~~l~~~~~L~~L~l~~~~~~~~~~~-  390 (469)
                        ..++|+.|++++|.+++.....+    ..+++|++|++++|.++..+.    ..+..+++|++|++++|.+++.... 
T Consensus       151 ~~~~~~L~~L~Ls~n~l~~~~~~~l~~~L~~~~~L~~L~Ls~N~l~~~g~~~L~~~L~~~~~L~~L~Ls~N~i~~~g~~~  230 (372)
T 3un9_A          151 LHDQCQITTLRLSNNPLTAAGVAVLMEGLAGNTSVTHLSLLHTGLGDEGLELLAAQLDRNRQLQELNVAYNGAGDTAALA  230 (372)
T ss_dssp             HSTTCCCCEEECCSSCCHHHHHHHHHHHHHTCSSCCEEECTTSSCHHHHHHHHHHHGGGCSCCCEEECCSSCCCHHHHHH
T ss_pred             HhcCCccceeeCCCCCCChHHHHHHHHHHhcCCCcCEEeCCCCCCCcHHHHHHHHHHhcCCCcCeEECCCCCCCHHHHHH
Confidence              46899999999999987655444    678999999999999987664    4456788999999999999986543 


Q ss_pred             ---HhHcCCCCCeeeeCCCCCCHHHHHHHhcCCC-----CCeee--ccCCCCCCh
Q 012186          391 ---YLRNFKNLRSLEICGGGLTDAGVKHIKDLSS-----LTLLN--LSQNCNLTD  435 (469)
Q Consensus       391 ---~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~-----L~~L~--l~~~~~l~~  435 (469)
                         .+..+++|+.|++++|.+++.+...+..+..     |+.+.  +..+ .+..
T Consensus       231 l~~~L~~~~~L~~L~Ls~N~i~~~g~~~L~~~~~~~~~~L~~l~~ll~~~-~~~~  284 (372)
T 3un9_A          231 LARAAREHPSLELLHLYFNELSSEGRQVLRDLGGAAEGGARVVVSLTEGT-AVSE  284 (372)
T ss_dssp             HHHHHHHCSSCCEEECTTSSCCHHHHHHHHHCC------CEEECCCC-----CHH
T ss_pred             HHHHHHhCCCCCEEeccCCCCCHHHHHHHHHHhcCCCccchhhHhhhcCC-ccCH
Confidence               4456799999999999999988887765422     66666  5555 4443

>3e6j_A Variable lymphocyte receptor diversity region; variable lymphocyte receptors, VLR, leucine-rich repeat, LRR adaptive immunity, immune system; HET: DR2; 1.67A {Petromyzon marinus}

Probab=99.60  E-value=2e-16  Score=136.20  Aligned_cols=150  Identities=21%  Similarity=0.151  Sum_probs=107.4

Q ss_pred             CCEEecCCCCCChHHHHHhhCCCCCCEEeccCCCCChhhHHHhhCCCCCcEEecccCCCCchHHHhhhCCCCCcEEEccC
Q 012186          278 LESLNLDSCGIGDEGLVNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISDGSLRKLAGLSSLKSLNLDA  357 (469)
Q Consensus       278 L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~  357 (469)
                      .+.++.+++.+...+.   .-.++|+.|++++|.+....+..+..+++|+.|++++|.+....+..+..+++|+.|++++
T Consensus        21 ~~~v~c~~~~l~~ip~---~~~~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~N~l~~i~~~~~~~l~~L~~L~Ls~   97 (229)
T 3e6j_A           21 GTTVDCRSKRHASVPA---GIPTNAQILYLHDNQITKLEPGVFDSLINLKELYLGSNQLGALPVGVFDSLTQLTVLDLGT   97 (229)
T ss_dssp             TTEEECTTSCCSSCCS---CCCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCS
T ss_pred             CCEeEccCCCcCccCC---CCCCCCCEEEcCCCccCccCHHHhhCccCCcEEECCCCCCCCcChhhcccCCCcCEEECCC
Confidence            4566666665543321   1236788888888877776666677788888888888877666556667778888888888


Q ss_pred             CCCCHHHHHHHhcCCCCCEeecCCCCCChhHHHHhHcCCCCCeeeeCCCCCCHHHHHHHhcCCCCCeeeccCCC
Q 012186          358 RQITDTGLAALTSLTGLTHLDLFGARITDSGAAYLRNFKNLRSLEICGGGLTDAGVKHIKDLSSLTLLNLSQNC  431 (469)
Q Consensus       358 ~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~  431 (469)
                      |.++......+..+++|++|++++|+++. +|..+..+++|+.|++++|.++...+..+..+++|+.|++++|+
T Consensus        98 N~l~~l~~~~~~~l~~L~~L~Ls~N~l~~-lp~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~  170 (229)
T 3e6j_A           98 NQLTVLPSAVFDRLVHLKELFMCCNKLTE-LPRGIERLTHLTHLALDQNQLKSIPHGAFDRLSSLTHAYLFGNP  170 (229)
T ss_dssp             SCCCCCCTTTTTTCTTCCEEECCSSCCCS-CCTTGGGCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECTTSC
T ss_pred             CcCCccChhHhCcchhhCeEeccCCcccc-cCcccccCCCCCEEECCCCcCCccCHHHHhCCCCCCEEEeeCCC
Confidence            87777655566677888888888887774 45566777888888888887777655566777788888888874

>2xot_A Amphoterin-induced protein 1; cell adhesion, neuronal protein, neurite growth regulation; HET: NAG BMA; 2.00A {Mus musculus}

Probab=99.60  E-value=3.9e-16  Score=144.42  Aligned_cols=176  Identities=21%  Similarity=0.181  Sum_probs=142.7

Q ss_pred             cEEECCCCCCChhHHHHhhcCCCccEEEccCCCCchHHHHHhh-CCCCCCEEecCCCCCChHHHHHhhCCCCCCEEeccC
Q 012186          231 FYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLK-GLTNLESLNLDSCGIGDEGLVNLTGLCNLKCLELSD  309 (469)
Q Consensus       231 ~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~-~l~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~  309 (469)
                      +.++.+++.+... |..  -.+.++.|++++|.++...+..+. .+++|+.|++++|.+....+..+..+++|+.|++++
T Consensus        21 ~~l~c~~~~l~~i-P~~--~~~~l~~L~Ls~N~l~~l~~~~~~~~l~~L~~L~L~~N~i~~i~~~~~~~l~~L~~L~Ls~   97 (361)
T 2xot_A           21 NILSCSKQQLPNV-PQS--LPSYTALLDLSHNNLSRLRAEWTPTRLTNLHSLLLSHNHLNFISSEAFVPVPNLRYLDLSS   97 (361)
T ss_dssp             TEEECCSSCCSSC-CSS--CCTTCSEEECCSSCCCEECTTSSSSCCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCS
T ss_pred             CEEEeCCCCcCcc-Ccc--CCCCCCEEECCCCCCCccChhhhhhcccccCEEECCCCcCCccChhhccCCCCCCEEECCC
Confidence            4677777776653 222  235689999999998876666666 889999999999988877666788899999999999


Q ss_pred             CCCChhhHHHhhCCCCCcEEecccCCCCchHHHhhhCCCCCcEEEccCCCCCHHHHHHH---hcCCCCCEeecCCCCCCh
Q 012186          310 TQVGSSGLRHLSGLTNLESINLSFTGISDGSLRKLAGLSSLKSLNLDARQITDTGLAAL---TSLTGLTHLDLFGARITD  386 (469)
Q Consensus       310 ~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l---~~~~~L~~L~l~~~~~~~  386 (469)
                      |.+.......+..+++|+.|++++|.+....+..+..+++|+.|++++|.++......+   ..+++|+.|++++|+++.
T Consensus        98 N~l~~~~~~~~~~l~~L~~L~L~~N~i~~~~~~~~~~l~~L~~L~L~~N~l~~l~~~~~~~~~~l~~L~~L~L~~N~l~~  177 (361)
T 2xot_A           98 NHLHTLDEFLFSDLQALEVLLLYNNHIVVVDRNAFEDMAQLQKLYLSQNQISRFPVELIKDGNKLPKLMLLDLSSNKLKK  177 (361)
T ss_dssp             SCCCEECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCSCCGGGTC----CTTCCEEECCSSCCCC
T ss_pred             CcCCcCCHHHhCCCcCCCEEECCCCcccEECHHHhCCcccCCEEECCCCcCCeeCHHHhcCcccCCcCCEEECCCCCCCc
Confidence            99888777778889999999999999988777888889999999999999887655544   568999999999999998


Q ss_pred             hHHHHhHcCCC--CCeeeeCCCCCC
Q 012186          387 SGAAYLRNFKN--LRSLEICGGGLT  409 (469)
Q Consensus       387 ~~~~~~~~~~~--L~~L~l~~~~~~  409 (469)
                      ..+..+..++.  ++.|++++|.+.
T Consensus       178 l~~~~~~~l~~~~l~~l~l~~N~~~  202 (361)
T 2xot_A          178 LPLTDLQKLPAWVKNGLYLHNNPLE  202 (361)
T ss_dssp             CCHHHHHHSCHHHHTTEECCSSCEE
T ss_pred             cCHHHhhhccHhhcceEEecCCCcc
Confidence            87788888887  488999998765

>3cvr_A Invasion plasmid antigen; leucine rich repeat and alpha fold, ligase; 2.80A {Shigella flexneri 2A}

Probab=99.60  E-value=5.2e-16  Score=150.37  Aligned_cols=186  Identities=15%  Similarity=0.092  Sum_probs=116.3

Q ss_pred             CCCeeeccCCCCchhhHHhhhcCCCCcEEECCCCCCChhHHHHhhcCCCccEEEccCCCCchHHHHHhhCCCCCCEEecC
Q 012186          205 KLTLLNLEGCPVTAACLDSLSALGSLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNLD  284 (469)
Q Consensus       205 ~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~  284 (469)
                      +++.|+++++.+... |..+  .++|++|++++|.+... +   ..+++|+.|++++|.+++ .+. +..  +|+.|+++
T Consensus        60 ~L~~L~Ls~n~L~~l-p~~l--~~~L~~L~Ls~N~l~~i-p---~~l~~L~~L~Ls~N~l~~-ip~-l~~--~L~~L~Ls  128 (571)
T 3cvr_A           60 QFSELQLNRLNLSSL-PDNL--PPQITVLEITQNALISL-P---ELPASLEYLDACDNRLST-LPE-LPA--SLKHLDVD  128 (571)
T ss_dssp             TCSEEECCSSCCSCC-CSCC--CTTCSEEECCSSCCSCC-C---CCCTTCCEEECCSSCCSC-CCC-CCT--TCCEEECC
T ss_pred             CccEEEeCCCCCCcc-CHhH--cCCCCEEECcCCCCccc-c---cccCCCCEEEccCCCCCC-cch-hhc--CCCEEECC
Confidence            788888888777653 3322  36788888888777642 2   446777888888777765 233 332  77777777


Q ss_pred             CCCCChHHHHHhhCCCCCCEEeccCCCCChhhHHHhhCCCCCcEEecccCCCCchHHHhhhCCCCCcEEEccCCCCCHHH
Q 012186          285 SCGIGDEGLVNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISDGSLRKLAGLSSLKSLNLDARQITDTG  364 (469)
Q Consensus       285 ~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~  364 (469)
                      +|.+...+.    .+++|+.|++++|.+.....    .+++|+.|++++|.+.....  +.  ++|+.|++++|.++..+
T Consensus       129 ~N~l~~lp~----~l~~L~~L~Ls~N~l~~lp~----~l~~L~~L~Ls~N~L~~lp~--l~--~~L~~L~Ls~N~L~~lp  196 (571)
T 3cvr_A          129 NNQLTMLPE----LPALLEYINADNNQLTMLPE----LPTSLEVLSVRNNQLTFLPE--LP--ESLEALDVSTNLLESLP  196 (571)
T ss_dssp             SSCCSCCCC----CCTTCCEEECCSSCCSCCCC----CCTTCCEEECCSSCCSCCCC--CC--TTCCEEECCSSCCSSCC
T ss_pred             CCcCCCCCC----cCccccEEeCCCCccCcCCC----cCCCcCEEECCCCCCCCcch--hh--CCCCEEECcCCCCCchh
Confidence            777665222    46677777777776665322    45677777777776665322  33  67777777777766432


Q ss_pred             HHHHhcCCCC-------CEeecCCCCCChhHHHHhHcCCCCCeeeeCCCCCCHHHHHHHhc
Q 012186          365 LAALTSLTGL-------THLDLFGARITDSGAAYLRNFKNLRSLEICGGGLTDAGVKHIKD  418 (469)
Q Consensus       365 ~~~l~~~~~L-------~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~  418 (469)
                      .  +..  +|       +.|++++|.++. +|..+..+++|+.|++++|.+++..|..+..
T Consensus       197 ~--~~~--~L~~~~~~L~~L~Ls~N~l~~-lp~~l~~l~~L~~L~L~~N~l~~~~p~~l~~  252 (571)
T 3cvr_A          197 A--VPV--RNHHSEETEIFFRCRENRITH-IPENILSLDPTCTIILEDNPLSSRIRESLSQ  252 (571)
T ss_dssp             C--CC----------CCEEEECCSSCCCC-CCGGGGGSCTTEEEECCSSSCCHHHHHHHHH
T ss_pred             h--HHH--hhhcccccceEEecCCCccee-cCHHHhcCCCCCEEEeeCCcCCCcCHHHHHH
Confidence            2  222  44       677777776665 3444555677777777777777666666544

>2v9t_B SLIT homolog 2 protein N-product; structural protein-receptor complex, developmental protein, domain, roundabout, chemotaxis, LRR domain; 1.70A {Homo sapiens} PDB: 2v9s_A

Probab=99.59  E-value=3.1e-16  Score=134.14  Aligned_cols=152  Identities=18%  Similarity=0.254  Sum_probs=131.7

Q ss_pred             cEEEccCCCCchHHHHHhhCCCCCCEEecCCCCCChHHHHHhhCCCCCCEEeccCCCCChhhHHHhhCCCCCcEEecccC
Q 012186          255 KVLNLGFNEITDECLVHLKGLTNLESLNLDSCGIGDEGLVNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSFT  334 (469)
Q Consensus       255 ~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~  334 (469)
                      +.++++++.++.. |..+  .++++.|++++|.+....+..+..+++|+.|++++|.+....+..+..+++|++|++++|
T Consensus        14 ~~v~c~~~~l~~i-P~~l--~~~l~~L~l~~n~i~~i~~~~~~~l~~L~~L~Ls~N~i~~~~~~~~~~l~~L~~L~Ls~N   90 (220)
T 2v9t_B           14 NIVDCRGKGLTEI-PTNL--PETITEIRLEQNTIKVIPPGAFSPYKKLRRIDLSNNQISELAPDAFQGLRSLNSLVLYGN   90 (220)
T ss_dssp             TEEECTTSCCSSC-CSSC--CTTCCEEECCSSCCCEECTTSSTTCTTCCEEECCSSCCCEECTTTTTTCSSCCEEECCSS
T ss_pred             CEEEcCCCCcCcC-CCcc--CcCCCEEECCCCcCCCcCHhHhhCCCCCCEEECCCCcCCCcCHHHhhCCcCCCEEECCCC
Confidence            5778888777642 3222  268999999999988776667888999999999999998887888999999999999999


Q ss_pred             CCCchHHHhhhCCCCCcEEEccCCCCCHHHHHHHhcCCCCCEeecCCCCCChhHHHHhHcCCCCCeeeeCCCCCC
Q 012186          335 GISDGSLRKLAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLFGARITDSGAAYLRNFKNLRSLEICGGGLT  409 (469)
Q Consensus       335 ~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~  409 (469)
                      .+.......+..+++|+.|++++|.++...+..+..+++|+.|++++|.+++..+..+..+++|+.|++++|.+.
T Consensus        91 ~l~~l~~~~f~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~~~  165 (220)
T 2v9t_B           91 KITELPKSLFEGLFSLQLLLLNANKINCLRVDAFQDLHNLNLLSLYDNKLQTIAKGTFSPLRAIQTMHLAQNPFI  165 (220)
T ss_dssp             CCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSCEE
T ss_pred             cCCccCHhHccCCCCCCEEECCCCCCCEeCHHHcCCCCCCCEEECCCCcCCEECHHHHhCCCCCCEEEeCCCCcC
Confidence            998877777888999999999999999887788889999999999999999988888889999999999998764

>1xeu_A Internalin C; cellular invasion, leucine-rich repeat, cell invasion; 2.05A {Listeria monocytogenes}

Probab=99.58  E-value=2.3e-16  Score=138.82  Aligned_cols=168  Identities=23%  Similarity=0.332  Sum_probs=129.5

Q ss_pred             CCccEEEccCCCCchHHHHHhhCCCCCCEEecCCCCCChHHHHHhhCCCCCCEEeccCCCCChhhHHHhhCCCCCcEEec
Q 012186          252 GSLKVLNLGFNEITDECLVHLKGLTNLESLNLDSCGIGDEGLVNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINL  331 (469)
Q Consensus       252 ~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l  331 (469)
                      .++..++++++.+++..  .+..+++|+.|++++|.+....  .+..+++|+.|++++|.+....+  +..+++|+.|++
T Consensus        19 ~~l~~l~l~~~~i~~~~--~~~~l~~L~~L~l~~n~i~~l~--~l~~l~~L~~L~L~~N~i~~~~~--l~~l~~L~~L~L   92 (263)
T 1xeu_A           19 ANAVKQNLGKQSVTDLV--SQKELSGVQNFNGDNSNIQSLA--GMQFFTNLKELHLSHNQISDLSP--LKDLTKLEELSV   92 (263)
T ss_dssp             HHHHHHHHTCSCTTSEE--CHHHHTTCSEEECTTSCCCCCT--TGGGCTTCCEEECCSSCCCCCGG--GTTCSSCCEEEC
T ss_pred             HHHHHHHhcCCCccccc--chhhcCcCcEEECcCCCcccch--HHhhCCCCCEEECCCCccCCChh--hccCCCCCEEEC
Confidence            44556667777666433  3566788999999998876543  57788899999999998887654  788899999999


Q ss_pred             ccCCCCchHHHhhhCCCCCcEEEccCCCCCHHHHHHHhcCCCCCEeecCCCCCChhHHHHhHcCCCCCeeeeCCCCCCHH
Q 012186          332 SFTGISDGSLRKLAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLFGARITDSGAAYLRNFKNLRSLEICGGGLTDA  411 (469)
Q Consensus       332 ~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~  411 (469)
                      ++|.+.+...  +.. ++|+.|++++|.++..  ..+..+++|+.|++++|++++..  .+..+++|+.|++++|.+++.
T Consensus        93 ~~N~l~~l~~--~~~-~~L~~L~L~~N~l~~~--~~l~~l~~L~~L~Ls~N~i~~~~--~l~~l~~L~~L~L~~N~i~~~  165 (263)
T 1xeu_A           93 NRNRLKNLNG--IPS-ACLSRLFLDNNELRDT--DSLIHLKNLEILSIRNNKLKSIV--MLGFLSKLEVLDLHGNEITNT  165 (263)
T ss_dssp             CSSCCSCCTT--CCC-SSCCEEECCSSCCSBS--GGGTTCTTCCEEECTTSCCCBCG--GGGGCTTCCEEECTTSCCCBC
T ss_pred             CCCccCCcCc--ccc-CcccEEEccCCccCCC--hhhcCcccccEEECCCCcCCCCh--HHccCCCCCEEECCCCcCcch
Confidence            9998876432  333 8899999999888875  35778889999999999888753  677888999999999888876


Q ss_pred             HHHHHhcCCCCCeeeccCCCCCCh
Q 012186          412 GVKHIKDLSSLTLLNLSQNCNLTD  435 (469)
Q Consensus       412 ~~~~l~~~~~L~~L~l~~~~~l~~  435 (469)
                        ..+..+++|+.|++++| .+..
T Consensus       166 --~~l~~l~~L~~L~l~~N-~~~~  186 (263)
T 1xeu_A          166 --GGLTRLKKVNWIDLTGQ-KCVN  186 (263)
T ss_dssp             --TTSTTCCCCCEEEEEEE-EEEC
T ss_pred             --HHhccCCCCCEEeCCCC-cccC
Confidence              45777888999999888 4443

>4ay9_X Follicle-stimulating hormone receptor; hormone-receptor complex, leucine-rich repeats, LRR, GPCR; HET: TYS NAG; 2.50A {Homo sapiens} PDB: 1xwd_C*

Probab=99.58  E-value=4.7e-16  Score=143.26  Aligned_cols=239  Identities=18%  Similarity=0.118  Sum_probs=129.8

Q ss_pred             cEEEecCCCCChHhhHhhhcCCCCCEEecCCCcccChhHhHhhhCCCCCCEEeCCCCCcCcHHHHHHHhCCCCCCEEecc
Q 012186           60 LSVDLSGSDVTDSGLIHLKDCSNLQSLDFNFCIQISDGGLEHLRGLSNLTSLSFRRNNAITAQGMKAFAGLINLVKLDLE  139 (469)
Q Consensus        60 ~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~l~  139 (469)
                      ++++.++++++ .+|..+  .+++++|++++ +.++.....+|.++++|++|++++|.+.....+..|.++++++++...
T Consensus        12 ~~v~C~~~~Lt-~iP~~l--~~~l~~L~Ls~-N~i~~i~~~~f~~l~~L~~L~Ls~N~i~~~i~~~~f~~L~~l~~~l~~   87 (350)
T 4ay9_X           12 RVFLCQESKVT-EIPSDL--PRNAIELRFVL-TKLRVIQKGAFSGFGDLEKIEISQNDVLEVIEADVFSNLPKLHEIRIE   87 (350)
T ss_dssp             TEEEEESTTCC-SCCTTC--CTTCSEEEEES-CCCSEECTTSSTTCTTCCEEEEECCTTCCEECTTSBCSCTTCCEEEEE
T ss_pred             CEEEecCCCCC-ccCcCc--CCCCCEEEccC-CcCCCcCHHHHcCCCCCCEEECcCCCCCCccChhHhhcchhhhhhhcc
Confidence            34555665555 234333  24666666666 355555555666666777777766654333333455566666554433


Q ss_pred             cccccccc-cccccCCCCccEEEccCCCCCChhhhhcccCCCCCCEEEecc-cccChhhhhhccCCC-CCCeeeccCCCC
Q 012186          140 RCTRIHGG-LVNLKGLMKLESLNIKWCNCITDSDMKPLSGLTNLKSLQISC-SKVTDSGIAYLKGLQ-KLTLLNLEGCPV  216 (469)
Q Consensus       140 ~~~~~~~~-~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~-~~~~~~~~~~l~~l~-~L~~L~l~~~~~  216 (469)
                      .+..+... +..+..+++|++|+++++. +.......+....++..+++.+ +.+.......+..+. .++.|++++|.+
T Consensus        88 ~~N~l~~l~~~~f~~l~~L~~L~l~~n~-l~~~~~~~~~~~~~l~~l~l~~~~~i~~l~~~~f~~~~~~l~~L~L~~N~i  166 (350)
T 4ay9_X           88 KANNLLYINPEAFQNLPNLQYLLISNTG-IKHLPDVHKIHSLQKVLLDIQDNINIHTIERNSFVGLSFESVILWLNKNGI  166 (350)
T ss_dssp             EETTCCEECTTSBCCCTTCCEEEEEEEC-CSSCCCCTTCCBSSCEEEEEESCTTCCEECTTSSTTSBSSCEEEECCSSCC
T ss_pred             cCCcccccCchhhhhccccccccccccc-cccCCchhhcccchhhhhhhccccccccccccchhhcchhhhhhccccccc
Confidence            32233333 3456667777777776633 3333333333445556666644 345444444444443 466777777776


Q ss_pred             chhhHHhhhcCCCCcEEECCC-CCCChhHHHHhhcCCCccEEEccCCCCchHHHHHhhCCCCCCEEecCCCC-CChHHHH
Q 012186          217 TAACLDSLSALGSLFYLNLNR-CQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNLDSCG-IGDEGLV  294 (469)
Q Consensus       217 ~~~~~~~~~~~~~L~~L~l~~-~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~-~~~~~~~  294 (469)
                      +...+..+ ...+|+.+.+.+ +.+.......|..+++|+.|++++|.++.....   .+.+|+.|.+.++. +...  +
T Consensus       167 ~~i~~~~f-~~~~L~~l~l~~~n~l~~i~~~~f~~l~~L~~LdLs~N~l~~lp~~---~~~~L~~L~~l~~~~l~~l--P  240 (350)
T 4ay9_X          167 QEIHNSAF-NGTQLDELNLSDNNNLEELPNDVFHGASGPVILDISRTRIHSLPSY---GLENLKKLRARSTYNLKKL--P  240 (350)
T ss_dssp             CEECTTSS-TTEEEEEEECTTCTTCCCCCTTTTTTEECCSEEECTTSCCCCCCSS---SCTTCCEEECTTCTTCCCC--C
T ss_pred             cCCChhhc-cccchhHHhhccCCcccCCCHHHhccCcccchhhcCCCCcCccChh---hhccchHhhhccCCCcCcC--C
Confidence            65433333 345677777754 445544445567777777777777777643222   24455565554442 2211  1


Q ss_pred             HhhCCCCCCEEeccC
Q 012186          295 NLTGLCNLKCLELSD  309 (469)
Q Consensus       295 ~~~~~~~L~~L~l~~  309 (469)
                      .+..+++|+.+++.+
T Consensus       241 ~l~~l~~L~~l~l~~  255 (350)
T 4ay9_X          241 TLEKLVALMEASLTY  255 (350)
T ss_dssp             CTTTCCSCCEEECSC
T ss_pred             CchhCcChhhCcCCC
Confidence            355677777777754

>2v70_A SLIT-2, SLIT homolog 2 protein N-product; neurogenesis, glycoprotein, secreted, chemotaxis, LRR structural protein, differentiation; HET: NAG; 3.01A {Homo sapiens}

Probab=99.58  E-value=7.6e-16  Score=131.68  Aligned_cols=153  Identities=17%  Similarity=0.244  Sum_probs=131.4

Q ss_pred             ccEEEccCCCCchHHHHHhhCCCCCCEEecCCCCCChHHH-HHhhCCCCCCEEeccCCCCChhhHHHhhCCCCCcEEecc
Q 012186          254 LKVLNLGFNEITDECLVHLKGLTNLESLNLDSCGIGDEGL-VNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLS  332 (469)
Q Consensus       254 L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~-~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~  332 (469)
                      -+.++++++.++. .|..+  .+.++.|++++|.+....+ ..+..+++|+.|++++|.+....+..+..+++|++|+++
T Consensus        13 ~~~l~~s~n~l~~-iP~~~--~~~~~~L~L~~N~l~~~~~~~~~~~l~~L~~L~L~~N~i~~i~~~~~~~l~~L~~L~Ls   89 (220)
T 2v70_A           13 GTTVDCSNQKLNK-IPEHI--PQYTAELRLNNNEFTVLEATGIFKKLPQLRKINFSNNKITDIEEGAFEGASGVNEILLT   89 (220)
T ss_dssp             TTEEECCSSCCSS-CCSCC--CTTCSEEECCSSCCCEECCCCCGGGCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECC
T ss_pred             CCEeEeCCCCccc-CccCC--CCCCCEEEcCCCcCCccCchhhhccCCCCCEEECCCCcCCEECHHHhCCCCCCCEEECC
Confidence            3588999888775 23322  3467899999998876533 347789999999999999988777788999999999999


Q ss_pred             cCCCCchHHHhhhCCCCCcEEEccCCCCCHHHHHHHhcCCCCCEeecCCCCCChhHHHHhHcCCCCCeeeeCCCCCC
Q 012186          333 FTGISDGSLRKLAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLFGARITDSGAAYLRNFKNLRSLEICGGGLT  409 (469)
Q Consensus       333 ~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~  409 (469)
                      +|.+....+..+..+++|+.|++++|.++...+..+..+++|+.|++++|.+++..+..+..+++|+.|++++|.+.
T Consensus        90 ~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~  166 (220)
T 2v70_A           90 SNRLENVQHKMFKGLESLKTLMLRSNRITCVGNDSFIGLSSVRLLSLYDNQITTVAPGAFDTLHSLSTLNLLANPFN  166 (220)
T ss_dssp             SSCCCCCCGGGGTTCSSCCEEECTTSCCCCBCTTSSTTCTTCSEEECTTSCCCCBCTTTTTTCTTCCEEECCSCCEE
T ss_pred             CCccCccCHhHhcCCcCCCEEECCCCcCCeECHhHcCCCccCCEEECCCCcCCEECHHHhcCCCCCCEEEecCcCCc
Confidence            99998888888899999999999999999887778889999999999999999988888999999999999999875

>2je0_A Acidic leucine-rich nuclear phosphoprotein 32 FAM member A; nuclear protein; 2.40A {Homo sapiens} PDB: 2je1_A

Probab=99.58  E-value=1.7e-15  Score=121.22  Aligned_cols=128  Identities=20%  Similarity=0.233  Sum_probs=82.2

Q ss_pred             CCCcEEecccCCCC-chHHHhhhCCCCCcEEEccCCCCCHHHHHHHhcCCCCCEeecCCCCCChhHHHHhHcCCCCCeee
Q 012186          324 TNLESINLSFTGIS-DGSLRKLAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLFGARITDSGAAYLRNFKNLRSLE  402 (469)
Q Consensus       324 ~~L~~L~l~~~~~~-~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~  402 (469)
                      ++|+.|++++|.+. ...+..+..+++|+.|++++|.++..  ..+..+++|++|++++|.+++..|..+..+++|+.|+
T Consensus        17 ~~l~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~--~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~   94 (149)
T 2je0_A           17 SDVKELVLDNSRSNEGKLEGLTDEFEELEFLSTINVGLTSI--ANLPKLNKLKKLELSDNRVSGGLEVLAEKCPNLTHLN   94 (149)
T ss_dssp             GGCSEEECTTCBCBTTBCCSCCTTCTTCCEEECTTSCCCCC--TTCCCCTTCCEEECCSSCCCSCTHHHHHHCTTCCEEE
T ss_pred             ccCeEEEccCCcCChhHHHHHHhhcCCCcEEECcCCCCCCc--hhhhcCCCCCEEECCCCcccchHHHHhhhCCCCCEEE
Confidence            45666666666554 23333445566666666666666654  4455667777777777777665566666677777777


Q ss_pred             eCCCCCCHH-HHHHHhcCCCCCeeeccCCCCCChhHH---HHHHhCcccccccccC
Q 012186          403 ICGGGLTDA-GVKHIKDLSSLTLLNLSQNCNLTDKTL---ELISGLTGLVSLNVSN  454 (469)
Q Consensus       403 l~~~~~~~~-~~~~l~~~~~L~~L~l~~~~~l~~~~~---~~l~~l~~L~~L~l~~  454 (469)
                      +++|.+++. .+..+..+++|++|++++| .++...+   ..+..+++|+.|++++
T Consensus        95 ls~N~i~~~~~~~~~~~l~~L~~L~l~~N-~l~~~~~~~~~~~~~l~~L~~L~l~d  149 (149)
T 2je0_A           95 LSGNKIKDLSTIEPLKKLENLKSLDLFNC-EVTNLNDYRENVFKLLPQLTYLDGYD  149 (149)
T ss_dssp             CTTSCCCSHHHHGGGGGCTTCCEEECTTC-GGGGSTTHHHHHHHHCTTCCEETTBC
T ss_pred             CCCCcCCChHHHHHHhhCCCCCEEeCcCC-cccchHHHHHHHHHHCCCcccccCCC
Confidence            777777664 2356667777777777777 5555544   4667777777777653

>3cvr_A Invasion plasmid antigen; leucine rich repeat and alpha fold, ligase; 2.80A {Shigella flexneri 2A}

Probab=99.56  E-value=5.9e-15  Score=142.97  Aligned_cols=134  Identities=20%  Similarity=0.147  Sum_probs=80.6

Q ss_pred             CccEEEccCCCCCChhhhhcccCCCCCCEEEecccccChhhhhhccCCCCCCeeeccCCCCchhhHHhhhcCCCCcEEEC
Q 012186          156 KLESLNIKWCNCITDSDMKPLSGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACLDSLSALGSLFYLNL  235 (469)
Q Consensus       156 ~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l  235 (469)
                      +|+.|+++++. +.. .+..+  .++|++|++++|.++..+    ..+++|++|++++|.++.. +. +..  +|+.|++
T Consensus        60 ~L~~L~Ls~n~-L~~-lp~~l--~~~L~~L~Ls~N~l~~ip----~~l~~L~~L~Ls~N~l~~i-p~-l~~--~L~~L~L  127 (571)
T 3cvr_A           60 QFSELQLNRLN-LSS-LPDNL--PPQITVLEITQNALISLP----ELPASLEYLDACDNRLSTL-PE-LPA--SLKHLDV  127 (571)
T ss_dssp             TCSEEECCSSC-CSC-CCSCC--CTTCSEEECCSSCCSCCC----CCCTTCCEEECCSSCCSCC-CC-CCT--TCCEEEC
T ss_pred             CccEEEeCCCC-CCc-cCHhH--cCCCCEEECcCCCCcccc----cccCCCCEEEccCCCCCCc-ch-hhc--CCCEEEC
Confidence            78888887744 443 22323  367888888887777433    4467777777777776663 32 333  7777777


Q ss_pred             CCCCCChhHHHHhhcCCCccEEEccCCCCchHHHHHhhCCCCCCEEecCCCCCChHHHHHhhCCCCCCEEeccCCCCC
Q 012186          236 NRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNLDSCGIGDEGLVNLTGLCNLKCLELSDTQVG  313 (469)
Q Consensus       236 ~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~  313 (469)
                      ++|.+... +.   .+++|+.|++++|.++.. +.   .+++|+.|++++|.+...+.  +.  ++|+.|++++|.+.
T Consensus       128 s~N~l~~l-p~---~l~~L~~L~Ls~N~l~~l-p~---~l~~L~~L~Ls~N~L~~lp~--l~--~~L~~L~Ls~N~L~  193 (571)
T 3cvr_A          128 DNNQLTML-PE---LPALLEYINADNNQLTML-PE---LPTSLEVLSVRNNQLTFLPE--LP--ESLEALDVSTNLLE  193 (571)
T ss_dssp             CSSCCSCC-CC---CCTTCCEEECCSSCCSCC-CC---CCTTCCEEECCSSCCSCCCC--CC--TTCCEEECCSSCCS
T ss_pred             CCCcCCCC-CC---cCccccEEeCCCCccCcC-CC---cCCCcCEEECCCCCCCCcch--hh--CCCCEEECcCCCCC
Confidence            77776652 22   456677777777666542 21   34566666666666554221  32  56666666666554

>1xeu_A Internalin C; cellular invasion, leucine-rich repeat, cell invasion; 2.05A {Listeria monocytogenes}

Probab=99.55  E-value=1.3e-15  Score=133.95  Aligned_cols=169  Identities=21%  Similarity=0.267  Sum_probs=139.0

Q ss_pred             CCCcEEECCCCCCChhHHHHhhcCCCccEEEccCCCCchHHHHHhhCCCCCCEEecCCCCCChHHHHHhhCCCCCCEEec
Q 012186          228 GSLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNLDSCGIGDEGLVNLTGLCNLKCLEL  307 (469)
Q Consensus       228 ~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l  307 (469)
                      .++..+++.++.+.+..  .+..+++|+.|+++++.+....  .+..+++|+.|++++|.+....+  +..+++|+.|++
T Consensus        19 ~~l~~l~l~~~~i~~~~--~~~~l~~L~~L~l~~n~i~~l~--~l~~l~~L~~L~L~~N~i~~~~~--l~~l~~L~~L~L   92 (263)
T 1xeu_A           19 ANAVKQNLGKQSVTDLV--SQKELSGVQNFNGDNSNIQSLA--GMQFFTNLKELHLSHNQISDLSP--LKDLTKLEELSV   92 (263)
T ss_dssp             HHHHHHHHTCSCTTSEE--CHHHHTTCSEEECTTSCCCCCT--TGGGCTTCCEEECCSSCCCCCGG--GTTCSSCCEEEC
T ss_pred             HHHHHHHhcCCCccccc--chhhcCcCcEEECcCCCcccch--HHhhCCCCCEEECCCCccCCChh--hccCCCCCEEEC
Confidence            44556667777766533  4677899999999999987542  67889999999999998876554  889999999999


Q ss_pred             cCCCCChhhHHHhhCCCCCcEEecccCCCCchHHHhhhCCCCCcEEEccCCCCCHHHHHHHhcCCCCCEeecCCCCCChh
Q 012186          308 SDTQVGSSGLRHLSGLTNLESINLSFTGISDGSLRKLAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLFGARITDS  387 (469)
Q Consensus       308 ~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~  387 (469)
                      ++|.+.....  +.. ++|+.|++++|.+.+.  ..+..+++|+.|++++|.++...  .+..+++|+.|++++|++++.
T Consensus        93 ~~N~l~~l~~--~~~-~~L~~L~L~~N~l~~~--~~l~~l~~L~~L~Ls~N~i~~~~--~l~~l~~L~~L~L~~N~i~~~  165 (263)
T 1xeu_A           93 NRNRLKNLNG--IPS-ACLSRLFLDNNELRDT--DSLIHLKNLEILSIRNNKLKSIV--MLGFLSKLEVLDLHGNEITNT  165 (263)
T ss_dssp             CSSCCSCCTT--CCC-SSCCEEECCSSCCSBS--GGGTTCTTCCEEECTTSCCCBCG--GGGGCTTCCEEECTTSCCCBC
T ss_pred             CCCccCCcCc--ccc-CcccEEEccCCccCCC--hhhcCcccccEEECCCCcCCCCh--HHccCCCCCEEECCCCcCcch
Confidence            9998876432  333 8999999999998875  35888999999999999998863  688999999999999999986


Q ss_pred             HHHHhHcCCCCCeeeeCCCCCCHH
Q 012186          388 GAAYLRNFKNLRSLEICGGGLTDA  411 (469)
Q Consensus       388 ~~~~~~~~~~L~~L~l~~~~~~~~  411 (469)
                        ..+..+++|+.|++++|.++..
T Consensus       166 --~~l~~l~~L~~L~l~~N~~~~~  187 (263)
T 1xeu_A          166 --GGLTRLKKVNWIDLTGQKCVNE  187 (263)
T ss_dssp             --TTSTTCCCCCEEEEEEEEEECC
T ss_pred             --HHhccCCCCCEEeCCCCcccCC
Confidence              6678899999999999987655

>2ell_A Acidic leucine-rich nuclear phosphoprotein 32 FAM B; phapi2 protein, silver-stainable protein SSP29, acidic prote in leucines, structural genomics; NMR {Homo sapiens} PDB: 2rr6_A 2jqd_A

Probab=99.54  E-value=1.1e-15  Score=124.94  Aligned_cols=133  Identities=20%  Similarity=0.205  Sum_probs=69.8

Q ss_pred             CCCcEEecccCCCC-chHHHhhhCCCCCcEEEccCCCCCHHHHHHHhcCCCCCEeecCCCCCChhHHHHhHcCCCCCeee
Q 012186          324 TNLESINLSFTGIS-DGSLRKLAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLFGARITDSGAAYLRNFKNLRSLE  402 (469)
Q Consensus       324 ~~L~~L~l~~~~~~-~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~  402 (469)
                      ++|+.|++++|.+. ...+..+..+++|+.|++++|.++..  ..+..+++|++|++++|.+++..+..+..+++|+.|+
T Consensus        24 ~~L~~L~l~~n~l~~~~i~~~~~~l~~L~~L~l~~n~l~~~--~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~  101 (168)
T 2ell_A           24 AAVRELVLDNCKSNDGKIEGLTAEFVNLEFLSLINVGLISV--SNLPKLPKLKKLELSENRIFGGLDMLAEKLPNLTHLN  101 (168)
T ss_dssp             TSCSEEECCSCBCBTTBCSSCCGGGGGCCEEEEESSCCCCC--SSCCCCSSCCEEEEESCCCCSCCCHHHHHCTTCCEEE
T ss_pred             ccCCEEECCCCCCChhhHHHHHHhCCCCCEEeCcCCCCCCh--hhhccCCCCCEEECcCCcCchHHHHHHhhCCCCCEEe
Confidence            44444444444443 12222334445555555555555443  3344555555555555555554444555556666666


Q ss_pred             eCCCCCCHHH-HHHHhcCCCCCeeeccCCCCCChhHH---HHHHhCcccccccccCCCCCH
Q 012186          403 ICGGGLTDAG-VKHIKDLSSLTLLNLSQNCNLTDKTL---ELISGLTGLVSLNVSNSRITS  459 (469)
Q Consensus       403 l~~~~~~~~~-~~~l~~~~~L~~L~l~~~~~l~~~~~---~~l~~l~~L~~L~l~~~~~~~  459 (469)
                      +++|.+++.. +..+..+++|++|++++| .++...+   ..+..+++|+.|++++|.+.+
T Consensus       102 Ls~N~l~~~~~~~~l~~l~~L~~L~l~~N-~l~~~~~~~~~~~~~l~~L~~L~l~~n~~~~  161 (168)
T 2ell_A          102 LSGNKLKDISTLEPLKKLECLKSLDLFNC-EVTNLNDYRESVFKLLPQLTYLDGYDREDQE  161 (168)
T ss_dssp             CBSSSCCSSGGGGGGSSCSCCCEEECCSS-GGGTSTTHHHHHHTTCSSCCEETTEETTSCB
T ss_pred             ccCCccCcchhHHHHhcCCCCCEEEeeCC-cCcchHHHHHHHHHhCccCcEecCCCCChhh
Confidence            6666555532 244555666666666666 4444433   355566666666666665543

>3e6j_A Variable lymphocyte receptor diversity region; variable lymphocyte receptors, VLR, leucine-rich repeat, LRR adaptive immunity, immune system; HET: DR2; 1.67A {Petromyzon marinus}

Probab=99.54  E-value=2.2e-15  Score=129.76  Aligned_cols=153  Identities=21%  Similarity=0.169  Sum_probs=121.3

Q ss_pred             CccEEEccCCCCchHHHHHhhCCCCCCEEecCCCCCChHHHHHhhCCCCCCEEeccCCCCChhhHHHhhCCCCCcEEecc
Q 012186          253 SLKVLNLGFNEITDECLVHLKGLTNLESLNLDSCGIGDEGLVNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLS  332 (469)
Q Consensus       253 ~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~  332 (469)
                      ..+.++.+++.+... |..  -.++|+.|++++|.+....+..+..+++|+.|++++|.+.......+..+++|+.|+++
T Consensus        20 s~~~v~c~~~~l~~i-p~~--~~~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~N~l~~i~~~~~~~l~~L~~L~Ls   96 (229)
T 3e6j_A           20 SGTTVDCRSKRHASV-PAG--IPTNAQILYLHDNQITKLEPGVFDSLINLKELYLGSNQLGALPVGVFDSLTQLTVLDLG   96 (229)
T ss_dssp             ETTEEECTTSCCSSC-CSC--CCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECC
T ss_pred             eCCEeEccCCCcCcc-CCC--CCCCCCEEEcCCCccCccCHHHhhCccCCcEEECCCCCCCCcChhhcccCCCcCEEECC
Confidence            356777777766532 222  23788999999988877666677888899999999998877666667888999999999


Q ss_pred             cCCCCchHHHhhhCCCCCcEEEccCCCCCHHHHHHHhcCCCCCEeecCCCCCChhHHHHhHcCCCCCeeeeCCCCCC
Q 012186          333 FTGISDGSLRKLAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLFGARITDSGAAYLRNFKNLRSLEICGGGLT  409 (469)
Q Consensus       333 ~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~  409 (469)
                      +|.+....+..+..+++|+.|++++|.++.. +..+..+++|+.|++++|++++..+..+..+++|+.|++++|.+.
T Consensus        97 ~N~l~~l~~~~~~~l~~L~~L~Ls~N~l~~l-p~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~~~  172 (229)
T 3e6j_A           97 TNQLTVLPSAVFDRLVHLKELFMCCNKLTEL-PRGIERLTHLTHLALDQNQLKSIPHGAFDRLSSLTHAYLFGNPWD  172 (229)
T ss_dssp             SSCCCCCCTTTTTTCTTCCEEECCSSCCCSC-CTTGGGCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECTTSCBC
T ss_pred             CCcCCccChhHhCcchhhCeEeccCCccccc-CcccccCCCCCEEECCCCcCCccCHHHHhCCCCCCEEEeeCCCcc
Confidence            9988877666777888999999999888854 455678889999999999888877777888889999999988776

>2je0_A Acidic leucine-rich nuclear phosphoprotein 32 FAM member A; nuclear protein; 2.40A {Homo sapiens} PDB: 2je1_A

Probab=99.53  E-value=1.2e-14  Score=116.26  Aligned_cols=128  Identities=24%  Similarity=0.288  Sum_probs=84.2

Q ss_pred             CCCCEEeccCCCCC-hhhHHHhhCCCCCcEEecccCCCCchHHHhhhCCCCCcEEEccCCCCCHHHHHHHhcCCCCCEee
Q 012186          300 CNLKCLELSDTQVG-SSGLRHLSGLTNLESINLSFTGISDGSLRKLAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLD  378 (469)
Q Consensus       300 ~~L~~L~l~~~~~~-~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~  378 (469)
                      ++++.|++++|.+. ...+..+..+++|+.|++++|.+...  ..+..+++|+.|++++|.++...+..+..+++|++|+
T Consensus        17 ~~l~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~--~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~   94 (149)
T 2je0_A           17 SDVKELVLDNSRSNEGKLEGLTDEFEELEFLSTINVGLTSI--ANLPKLNKLKKLELSDNRVSGGLEVLAEKCPNLTHLN   94 (149)
T ss_dssp             GGCSEEECTTCBCBTTBCCSCCTTCTTCCEEECTTSCCCCC--TTCCCCTTCCEEECCSSCCCSCTHHHHHHCTTCCEEE
T ss_pred             ccCeEEEccCCcCChhHHHHHHhhcCCCcEEECcCCCCCCc--hhhhcCCCCCEEECCCCcccchHHHHhhhCCCCCEEE
Confidence            45555555555554 22233445566666666666666554  4556667777777777777764455666677777777


Q ss_pred             cCCCCCChh-HHHHhHcCCCCCeeeeCCCCCCHHHH---HHHhcCCCCCeeeccC
Q 012186          379 LFGARITDS-GAAYLRNFKNLRSLEICGGGLTDAGV---KHIKDLSSLTLLNLSQ  429 (469)
Q Consensus       379 l~~~~~~~~-~~~~~~~~~~L~~L~l~~~~~~~~~~---~~l~~~~~L~~L~l~~  429 (469)
                      +++|.+++. .+..+..+++|+.|++++|.+++..+   ..+..+++|+.|++++
T Consensus        95 ls~N~i~~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~~~~l~~L~~L~l~d  149 (149)
T 2je0_A           95 LSGNKIKDLSTIEPLKKLENLKSLDLFNCEVTNLNDYRENVFKLLPQLTYLDGYD  149 (149)
T ss_dssp             CTTSCCCSHHHHGGGGGCTTCCEEECTTCGGGGSTTHHHHHHHHCTTCCEETTBC
T ss_pred             CCCCcCCChHHHHHHhhCCCCCEEeCcCCcccchHHHHHHHHHHCCCcccccCCC
Confidence            777777764 34667777888888888877776544   4667788888887763

>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A*

Probab=99.52  E-value=9.6e-17  Score=156.35  Aligned_cols=122  Identities=20%  Similarity=0.291  Sum_probs=85.7

Q ss_pred             CCcEEecccCCCCchHHHhhhCCCCCcEEEccCCCCCHHHHHHHhcCCCCCEeecCCCCCChhHHHHhHcCCCCCeeeeC
Q 012186          325 NLESINLSFTGISDGSLRKLAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLFGARITDSGAAYLRNFKNLRSLEIC  404 (469)
Q Consensus       325 ~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~  404 (469)
                      .|+.|++++|.++.. +. +..+++|+.|++++|.++.. +..+..+++|+.|++++|.+++. | .+..+++|+.|+++
T Consensus       442 ~L~~L~Ls~n~l~~l-p~-~~~l~~L~~L~Ls~N~l~~l-p~~~~~l~~L~~L~Ls~N~l~~l-p-~l~~l~~L~~L~Ls  516 (567)
T 1dce_A          442 DVRVLHLAHKDLTVL-CH-LEQLLLVTHLDLSHNRLRAL-PPALAALRCLEVLQASDNALENV-D-GVANLPRLQELLLC  516 (567)
T ss_dssp             TCSEEECTTSCCSSC-CC-GGGGTTCCEEECCSSCCCCC-CGGGGGCTTCCEEECCSSCCCCC-G-GGTTCSSCCEEECC
T ss_pred             CceEEEecCCCCCCC-cC-ccccccCcEeecCccccccc-chhhhcCCCCCEEECCCCCCCCC-c-ccCCCCCCcEEECC
Confidence            577777777777653 22 66777788888887777743 45677777888888888877773 3 67777888888888


Q ss_pred             CCCCCHHH-HHHHhcCCCCCeeeccCCCCCChhHH---HHHHhCcccccccc
Q 012186          405 GGGLTDAG-VKHIKDLSSLTLLNLSQNCNLTDKTL---ELISGLTGLVSLNV  452 (469)
Q Consensus       405 ~~~~~~~~-~~~l~~~~~L~~L~l~~~~~l~~~~~---~~l~~l~~L~~L~l  452 (469)
                      +|.+++.. |..++.+++|+.|++++| .++..++   ..+..+|+|+.|++
T Consensus       517 ~N~l~~~~~p~~l~~l~~L~~L~L~~N-~l~~~~~~~~~l~~~lp~L~~L~l  567 (567)
T 1dce_A          517 NNRLQQSAAIQPLVSCPRLVLLNLQGN-SLCQEEGIQERLAEMLPSVSSILT  567 (567)
T ss_dssp             SSCCCSSSTTGGGGGCTTCCEEECTTS-GGGGSSSCTTHHHHHCTTCSEEEC
T ss_pred             CCCCCCCCCcHHHhcCCCCCEEEecCC-cCCCCccHHHHHHHHCcccCccCC
Confidence            88777765 677777888888888887 5555432   23445777777753

>4fdw_A Leucine rich hypothetical protein; putative cell surface protein, BIG3 domain, LRR domain, STRU genomics; 2.05A {Bacteroides ovatus} PDB: 4fd0_A

Probab=99.50  E-value=1.5e-14  Score=134.68  Aligned_cols=262  Identities=10%  Similarity=0.096  Sum_probs=119.7

Q ss_pred             CCccEEEccCCCCCChhhhhcccCCCCCCEEEecccccChhhhhhccCCCCCCeeeccCCCCchhhHHhhhcCCCCcEEE
Q 012186          155 MKLESLNIKWCNCITDSDMKPLSGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACLDSLSALGSLFYLN  234 (469)
Q Consensus       155 ~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~  234 (469)
                      ..++.+.+..  .+......++.++ +|+.+.+..+ ++......|.++ +|+.+.+.. .+.......|..+++|+.++
T Consensus       113 ~~l~~i~ip~--~i~~I~~~aF~~~-~L~~i~l~~~-i~~I~~~aF~~~-~L~~i~lp~-~l~~I~~~aF~~c~~L~~l~  186 (401)
T 4fdw_A          113 KGYNEIILPN--SVKSIPKDAFRNS-QIAKVVLNEG-LKSIGDMAFFNS-TVQEIVFPS-TLEQLKEDIFYYCYNLKKAD  186 (401)
T ss_dssp             SSCSEEECCT--TCCEECTTTTTTC-CCSEEECCTT-CCEECTTTTTTC-CCCEEECCT-TCCEECSSTTTTCTTCCEEE
T ss_pred             CCccEEEECC--ccCEehHhhcccC-CccEEEeCCC-ccEECHHhcCCC-CceEEEeCC-CccEehHHHhhCcccCCeee
Confidence            4455555442  2333333444443 4555555433 333333344442 355555543 23333334455555555555


Q ss_pred             CCCCCCChhHHHHhhcCCCccEEEccCCCCchHHHHHhhCCCCCCEEecCCCCCChHHHHHhhCCCCCCEEeccCCCCCh
Q 012186          235 LNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNLDSCGIGDEGLVNLTGLCNLKCLELSDTQVGS  314 (469)
Q Consensus       235 l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~  314 (469)
                      +..+.+.......|. ..+|+.+.+..+ +.......|..+++|+.+.+..+ +......+|.. .+|+.+.+.+ .+..
T Consensus       187 l~~n~l~~I~~~aF~-~~~L~~l~lp~~-l~~I~~~aF~~~~~L~~l~l~~~-l~~I~~~aF~~-~~L~~i~lp~-~i~~  261 (401)
T 4fdw_A          187 LSKTKITKLPASTFV-YAGIEEVLLPVT-LKEIGSQAFLKTSQLKTIEIPEN-VSTIGQEAFRE-SGITTVKLPN-GVTN  261 (401)
T ss_dssp             CTTSCCSEECTTTTT-TCCCSEEECCTT-CCEECTTTTTTCTTCCCEECCTT-CCEECTTTTTT-CCCSEEEEET-TCCE
T ss_pred             cCCCcceEechhhEe-ecccCEEEeCCc-hheehhhHhhCCCCCCEEecCCC-ccCcccccccc-CCccEEEeCC-CccE
Confidence            555544443333333 345555555432 33233344555555555555543 22222333433 4555555532 2333


Q ss_pred             hhHHHhhCCCCCcEEecccCCCC-----chHHHhhhCCCCCcEEEccCCCCCHHHHHHHhcCCCCCEeecCCCCCChhHH
Q 012186          315 SGLRHLSGLTNLESINLSFTGIS-----DGSLRKLAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLFGARITDSGA  389 (469)
Q Consensus       315 ~~~~~~~~~~~L~~L~l~~~~~~-----~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~  389 (469)
                      .....|..|++|+.+.+.++...     .....+|..|++|+.+.+.. .++.....+|.+|.+|+.+.+..+ ++.+..
T Consensus       262 I~~~aF~~c~~L~~l~l~~~~~~~~~~~~I~~~aF~~c~~L~~l~l~~-~i~~I~~~aF~~c~~L~~l~lp~~-l~~I~~  339 (401)
T 4fdw_A          262 IASRAFYYCPELAEVTTYGSTFNDDPEAMIHPYCLEGCPKLARFEIPE-SIRILGQGLLGGNRKVTQLTIPAN-VTQINF  339 (401)
T ss_dssp             ECTTTTTTCTTCCEEEEESSCCCCCTTCEECTTTTTTCTTCCEECCCT-TCCEECTTTTTTCCSCCEEEECTT-CCEECT
T ss_pred             EChhHhhCCCCCCEEEeCCccccCCcccEECHHHhhCCccCCeEEeCC-ceEEEhhhhhcCCCCccEEEECcc-ccEEcH
Confidence            33444555555555555554332     22334445555555555552 344444444555555555555332 444444


Q ss_pred             HHhHcCCCCCeeeeCCCCCCHHHHHHHhcCC-CCCeeeccCC
Q 012186          390 AYLRNFKNLRSLEICGGGLTDAGVKHIKDLS-SLTLLNLSQN  430 (469)
Q Consensus       390 ~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~-~L~~L~l~~~  430 (469)
                      .+|.++ +|+.+.+.+|.........|.+++ .++.|.+..+
T Consensus       340 ~aF~~~-~L~~l~l~~n~~~~l~~~~F~~~~~~l~~l~vp~~  380 (401)
T 4fdw_A          340 SAFNNT-GIKEVKVEGTTPPQVFEKVWYGFPDDITVIRVPAE  380 (401)
T ss_dssp             TSSSSS-CCCEEEECCSSCCBCCCSSCCCSCTTCCEEEECGG
T ss_pred             HhCCCC-CCCEEEEcCCCCcccccccccCCCCCccEEEeCHH
Confidence            445555 555555555544443333333342 4445544443

>4fs7_A Uncharacterized protein; leucine-rich repeats, protein binding, extracellular protein structural genomics; HET: MSE; 1.19A {Bacteroides ovatus}

Probab=99.50  E-value=1.1e-14  Score=136.35  Aligned_cols=315  Identities=16%  Similarity=0.133  Sum_probs=161.8

Q ss_pred             HhhHhhhcCCCCCEEecCCCcccChhHhHhhhCCCCCCEEeCCCCCcCcHHHHHHHhCCCCCCEEecccccccccccccc
Q 012186           72 SGLIHLKDCSNLQSLDFNFCIQISDGGLEHLRGLSNLTSLSFRRNNAITAQGMKAFAGLINLVKLDLERCTRIHGGLVNL  151 (469)
Q Consensus        72 ~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~l  151 (469)
                      ....+|..|.+|+.+.+..  .++.....+|.+|.+|+.+++..+  +.......|..+.+|+.+.+... .......++
T Consensus        62 Ig~~AF~~c~~L~~i~lp~--~i~~I~~~aF~~c~~L~~i~lp~~--l~~I~~~aF~~c~~L~~i~~p~~-l~~i~~~aF  136 (394)
T 4fs7_A           62 IGYAAFQGCRKVTEIKIPS--TVREIGEFAFENCSKLEIINIPDS--VKMIGRCTFSGCYALKSILLPLM-LKSIGVEAF  136 (394)
T ss_dssp             ECTTTTTTCTTEEEEECCT--TCCEECTTTTTTCTTCCEECCCTT--CCEECTTTTTTCTTCCCCCCCTT-CCEECTTTT
T ss_pred             hHHHHhhCCCCceEEEeCC--CccCcchhHhhCCCCCcEEEeCCC--ceEccchhhcccccchhhcccCc-eeeecceee
Confidence            3346788888999988864  467777778888888998888765  23344566778888888777653 222233445


Q ss_pred             cCCCCccEEEccCCCCCChhhhhcccCCCCCCEEEecccccChhhhhhccCCCCCCeeeccCCCCchhhHHhhhcCCCCc
Q 012186          152 KGLMKLESLNIKWCNCITDSDMKPLSGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACLDSLSALGSLF  231 (469)
Q Consensus       152 ~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~L~  231 (469)
                      ..+..++......   .......++.++++|+.+.+.++. .......|.++++|+.+.+..+ +.......+..+..|+
T Consensus       137 ~~~~~~~~~~~~~---~~~i~~~aF~~c~~L~~i~l~~~~-~~I~~~~F~~c~~L~~i~l~~~-~~~I~~~~F~~~~~L~  211 (394)
T 4fs7_A          137 KGCDFKEITIPEG---VTVIGDEAFATCESLEYVSLPDSM-ETLHNGLFSGCGKLKSIKLPRN-LKIIRDYCFAECILLE  211 (394)
T ss_dssp             TTCCCSEEECCTT---CCEECTTTTTTCTTCCEEECCTTC-CEECTTTTTTCTTCCBCCCCTT-CCEECTTTTTTCTTCC
T ss_pred             ecccccccccCcc---ccccchhhhcccCCCcEEecCCcc-ceeccccccCCCCceEEEcCCC-ceEeCchhhccccccc
Confidence            5554433333222   223334566777778887776442 3344456677777777777654 3333344566666666


Q ss_pred             EEECCCCCCChhHHHHhhcCCCccEEEccCCCCchHHHHHhhCCCCCCEEecCCCCCChHHHHHhhCCCCCCEEeccCCC
Q 012186          232 YLNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNLDSCGIGDEGLVNLTGLCNLKCLELSDTQ  311 (469)
Q Consensus       232 ~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~  311 (469)
                      .+.+..+...-  .........|+.+.+.... .......+..+..++.+.+..+.. ......+..+..++.+..... 
T Consensus       212 ~i~~~~~~~~i--~~~~~~~~~l~~i~ip~~~-~~i~~~~f~~~~~l~~~~~~~~~~-~i~~~~F~~~~~l~~~~~~~~-  286 (394)
T 4fs7_A          212 NMEFPNSLYYL--GDFALSKTGVKNIIIPDSF-TELGKSVFYGCTDLESISIQNNKL-RIGGSLFYNCSGLKKVIYGSV-  286 (394)
T ss_dssp             BCCCCTTCCEE--CTTTTTTCCCCEEEECTTC-CEECSSTTTTCSSCCEEEECCTTC-EECSCTTTTCTTCCEEEECSS-
T ss_pred             eeecCCCceEe--ehhhcccCCCceEEECCCc-eecccccccccccceeEEcCCCcc-eeeccccccccccceeccCce-
Confidence            66554432110  0111223445555543221 111122334445555555544321 111223334444444443332 


Q ss_pred             CChhhHHHhhCCCCCcEEecccCCCCchHHHhhhCCCCCcEEEccCCCCCHHHHHHHhcCCCCCEeecCCCCCChhHHHH
Q 012186          312 VGSSGLRHLSGLTNLESINLSFTGISDGSLRKLAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLFGARITDSGAAY  391 (469)
Q Consensus       312 ~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~  391 (469)
                                             .+.+   ..+..+.+|+.+.+..+ ++..+..++.+|.+|+.+++.++ ++.+...+
T Consensus       287 -----------------------~i~~---~~F~~~~~L~~i~l~~~-i~~I~~~aF~~c~~L~~i~lp~~-v~~I~~~a  338 (394)
T 4fs7_A          287 -----------------------IVPE---KTFYGCSSLTEVKLLDS-VKFIGEEAFESCTSLVSIDLPYL-VEEIGKRS  338 (394)
T ss_dssp             -----------------------EECT---TTTTTCTTCCEEEECTT-CCEECTTTTTTCTTCCEECCCTT-CCEECTTT
T ss_pred             -----------------------eecc---ccccccccccccccccc-cceechhhhcCCCCCCEEEeCCc-ccEEhHHh
Confidence                                   2111   22334444555444332 33333344445555555555432 44444445


Q ss_pred             hHcCCCCCeeeeCCCCCCHHHHHHHhcCCCCCeeeccCC
Q 012186          392 LRNFKNLRSLEICGGGLTDAGVKHIKDLSSLTLLNLSQN  430 (469)
Q Consensus       392 ~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~  430 (469)
                      |.+|.+|+.+.+..+ ++......|.+|++|+.+++..+
T Consensus       339 F~~c~~L~~i~lp~~-l~~I~~~aF~~C~~L~~i~lp~~  376 (394)
T 4fs7_A          339 FRGCTSLSNINFPLS-LRKIGANAFQGCINLKKVELPKR  376 (394)
T ss_dssp             TTTCTTCCEECCCTT-CCEECTTTBTTCTTCCEEEEEGG
T ss_pred             ccCCCCCCEEEECcc-ccEehHHHhhCCCCCCEEEECCC
Confidence            555555655555543 44444445556666666666544

>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A*

Probab=99.48  E-value=1.2e-15  Score=148.59  Aligned_cols=209  Identities=16%  Similarity=0.121  Sum_probs=130.3

Q ss_pred             cCCCCCCeeeccCCCCchhhHHhhhcCCCCcEEECCCCCCChhHHHHhhcCCCccEEEccCCCCchHHHHHhhCCCCCCE
Q 012186          201 KGLQKLTLLNLEGCPVTAACLDSLSALGSLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLES  280 (469)
Q Consensus       201 ~~l~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~  280 (469)
                      ..+++|+.|++++|.+.. .|..++.+++|+.|++.++......+..+.           .+...+..+..+..+++|+.
T Consensus       346 ~~~~~L~~L~Ls~n~L~~-Lp~~i~~l~~L~~L~l~~n~~l~~l~~ll~-----------~~~~~~~~~~~l~~l~~L~~  413 (567)
T 1dce_A          346 ATDEQLFRCELSVEKSTV-LQSELESCKELQELEPENKWCLLTIILLMR-----------ALDPLLYEKETLQYFSTLKA  413 (567)
T ss_dssp             STTTTSSSCCCCHHHHHH-HHHHHHHHHHHHHHCTTCHHHHHHHHHHHH-----------HHCTGGGHHHHHHHHHHHHH
T ss_pred             ccCccceeccCChhhHHh-hHHHHHHHHHHHHhccccchhhhhHHHHHH-----------hcccccCCHHHHHHHHhccc
Confidence            456677777777776654 366777777777777754421000000000           00112223334444444444


Q ss_pred             Ee-cCCCCCChH--------HHHHhhCCCCCCEEeccCCCCChhhHHHhhCCCCCcEEecccCCCCchHHHhhhCCCCCc
Q 012186          281 LN-LDSCGIGDE--------GLVNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISDGSLRKLAGLSSLK  351 (469)
Q Consensus       281 L~-l~~~~~~~~--------~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~  351 (469)
                      |+ ++.+.+...        ....+. ...|+.|++++|.+.... . ++.+++|+.|++++|.+.. .|..++.+++|+
T Consensus       414 L~~l~~n~~~~L~~l~l~~n~i~~l~-~~~L~~L~Ls~n~l~~lp-~-~~~l~~L~~L~Ls~N~l~~-lp~~~~~l~~L~  489 (567)
T 1dce_A          414 VDPMRAAYLDDLRSKFLLENSVLKME-YADVRVLHLAHKDLTVLC-H-LEQLLLVTHLDLSHNRLRA-LPPALAALRCLE  489 (567)
T ss_dssp             HCGGGHHHHHHHHHHHHHHHHHHHHH-HTTCSEEECTTSCCSSCC-C-GGGGTTCCEEECCSSCCCC-CCGGGGGCTTCC
T ss_pred             CcchhhcccchhhhhhhhcccccccC-ccCceEEEecCCCCCCCc-C-ccccccCcEeecCcccccc-cchhhhcCCCCC
Confidence            44 222211110        011111 135778888888776643 2 7778888888888887774 456777888888


Q ss_pred             EEEccCCCCCHHHHHHHhcCCCCCEeecCCCCCChhH-HHHhHcCCCCCeeeeCCCCCCHHHH---HHHhcCCCCCeeec
Q 012186          352 SLNLDARQITDTGLAALTSLTGLTHLDLFGARITDSG-AAYLRNFKNLRSLEICGGGLTDAGV---KHIKDLSSLTLLNL  427 (469)
Q Consensus       352 ~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~-~~~~~~~~~L~~L~l~~~~~~~~~~---~~l~~~~~L~~L~l  427 (469)
                      .|++++|.++..+  .+..+++|+.|++++|.+++.. |..+..+++|+.|++++|.+++..+   ..+..+|+|+.|++
T Consensus       490 ~L~Ls~N~l~~lp--~l~~l~~L~~L~Ls~N~l~~~~~p~~l~~l~~L~~L~L~~N~l~~~~~~~~~l~~~lp~L~~L~l  567 (567)
T 1dce_A          490 VLQASDNALENVD--GVANLPRLQELLLCNNRLQQSAAIQPLVSCPRLVLLNLQGNSLCQEEGIQERLAEMLPSVSSILT  567 (567)
T ss_dssp             EEECCSSCCCCCG--GGTTCSSCCEEECCSSCCCSSSTTGGGGGCTTCCEEECTTSGGGGSSSCTTHHHHHCTTCSEEEC
T ss_pred             EEECCCCCCCCCc--ccCCCCCCcEEECCCCCCCCCCCcHHHhcCCCCCEEEecCCcCCCCccHHHHHHHHCcccCccCC
Confidence            8888888888753  6778888888888888888876 7788888888888888888876533   23345888888864

>2ell_A Acidic leucine-rich nuclear phosphoprotein 32 FAM B; phapi2 protein, silver-stainable protein SSP29, acidic prote in leucines, structural genomics; NMR {Homo sapiens} PDB: 2rr6_A 2jqd_A

Probab=99.46  E-value=1.9e-14  Score=117.55  Aligned_cols=129  Identities=25%  Similarity=0.279  Sum_probs=84.1

Q ss_pred             CCCCEEeccCCCCC-hhhHHHhhCCCCCcEEecccCCCCchHHHhhhCCCCCcEEEccCCCCCHHHHHHHhcCCCCCEee
Q 012186          300 CNLKCLELSDTQVG-SSGLRHLSGLTNLESINLSFTGISDGSLRKLAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLD  378 (469)
Q Consensus       300 ~~L~~L~l~~~~~~-~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~  378 (469)
                      ++|+.|++.+|.+. ...+..+..+++|+.|++++|.+...  ..+..+++|+.|++++|.++...+..+..+++|+.|+
T Consensus        24 ~~L~~L~l~~n~l~~~~i~~~~~~l~~L~~L~l~~n~l~~~--~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~  101 (168)
T 2ell_A           24 AAVRELVLDNCKSNDGKIEGLTAEFVNLEFLSLINVGLISV--SNLPKLPKLKKLELSENRIFGGLDMLAEKLPNLTHLN  101 (168)
T ss_dssp             TSCSEEECCSCBCBTTBCSSCCGGGGGCCEEEEESSCCCCC--SSCCCCSSCCEEEEESCCCCSCCCHHHHHCTTCCEEE
T ss_pred             ccCCEEECCCCCCChhhHHHHHHhCCCCCEEeCcCCCCCCh--hhhccCCCCCEEECcCCcCchHHHHHHhhCCCCCEEe
Confidence            45555555555544 12233345566666777766666554  4555667777777777777664455555677777777


Q ss_pred             cCCCCCChhH-HHHhHcCCCCCeeeeCCCCCCHHHH---HHHhcCCCCCeeeccCC
Q 012186          379 LFGARITDSG-AAYLRNFKNLRSLEICGGGLTDAGV---KHIKDLSSLTLLNLSQN  430 (469)
Q Consensus       379 l~~~~~~~~~-~~~~~~~~~L~~L~l~~~~~~~~~~---~~l~~~~~L~~L~l~~~  430 (469)
                      +++|.+++.. +..+..+++|+.|++++|.+++..+   ..+..+++|++|++++|
T Consensus       102 Ls~N~l~~~~~~~~l~~l~~L~~L~l~~N~l~~~~~~~~~~~~~l~~L~~L~l~~n  157 (168)
T 2ell_A          102 LSGNKLKDISTLEPLKKLECLKSLDLFNCEVTNLNDYRESVFKLLPQLTYLDGYDR  157 (168)
T ss_dssp             CBSSSCCSSGGGGGGSSCSCCCEEECCSSGGGTSTTHHHHHHTTCSSCCEETTEET
T ss_pred             ccCCccCcchhHHHHhcCCCCCEEEeeCCcCcchHHHHHHHHHhCccCcEecCCCC
Confidence            7777777643 2566677778888888877766544   46677888888888888

>4fdw_A Leucine rich hypothetical protein; putative cell surface protein, BIG3 domain, LRR domain, STRU genomics; 2.05A {Bacteroides ovatus} PDB: 4fd0_A

Probab=99.46  E-value=6.9e-14  Score=130.28  Aligned_cols=241  Identities=11%  Similarity=0.114  Sum_probs=135.0

Q ss_pred             CccEEEccCCCCCChhhhhcccCCCCCCEEEecccccChhhhhhccCCCCCCeeeccCCCCchhhHHhhhcCCCCcEEEC
Q 012186          156 KLESLNIKWCNCITDSDMKPLSGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACLDSLSALGSLFYLNL  235 (469)
Q Consensus       156 ~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l  235 (469)
                      +|+.+.+..  .+......++.++ +|+.+.+.. .+.......|.+|++|+.+++.++.+.......|. +.+|+.+.+
T Consensus       136 ~L~~i~l~~--~i~~I~~~aF~~~-~L~~i~lp~-~l~~I~~~aF~~c~~L~~l~l~~n~l~~I~~~aF~-~~~L~~l~l  210 (401)
T 4fdw_A          136 QIAKVVLNE--GLKSIGDMAFFNS-TVQEIVFPS-TLEQLKEDIFYYCYNLKKADLSKTKITKLPASTFV-YAGIEEVLL  210 (401)
T ss_dssp             CCSEEECCT--TCCEECTTTTTTC-CCCEEECCT-TCCEECSSTTTTCTTCCEEECTTSCCSEECTTTTT-TCCCSEEEC
T ss_pred             CccEEEeCC--CccEECHHhcCCC-CceEEEeCC-CccEehHHHhhCcccCCeeecCCCcceEechhhEe-ecccCEEEe
Confidence            455555443  1333333344442 455555543 33333344555555555555555555444334444 355666655


Q ss_pred             CCCCCChhHHHHhhcCCCccEEEccCCCCchHHHHHhhCCCCCCEEecCCCCCChHHHHHhhCCCCCCEEeccCCCCC--
Q 012186          236 NRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNLDSCGIGDEGLVNLTGLCNLKCLELSDTQVG--  313 (469)
Q Consensus       236 ~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~--  313 (469)
                      ..+ +.......|..+++|+.+.+..+ +.......|.. .+|+.+.+.++ +......+|..|++|+.+.+.++...  
T Consensus       211 p~~-l~~I~~~aF~~~~~L~~l~l~~~-l~~I~~~aF~~-~~L~~i~lp~~-i~~I~~~aF~~c~~L~~l~l~~~~~~~~  286 (401)
T 4fdw_A          211 PVT-LKEIGSQAFLKTSQLKTIEIPEN-VSTIGQEAFRE-SGITTVKLPNG-VTNIASRAFYYCPELAEVTTYGSTFNDD  286 (401)
T ss_dssp             CTT-CCEECTTTTTTCTTCCCEECCTT-CCEECTTTTTT-CCCSEEEEETT-CCEECTTTTTTCTTCCEEEEESSCCCCC
T ss_pred             CCc-hheehhhHhhCCCCCCEEecCCC-ccCcccccccc-CCccEEEeCCC-ccEEChhHhhCCCCCCEEEeCCccccCC
Confidence            432 43334445555666666666543 22222334444 46666666433 44444455666777777777665433  


Q ss_pred             ---hhhHHHhhCCCCCcEEecccCCCCchHHHhhhCCCCCcEEEccCCCCCHHHHHHHhcCCCCCEeecCCCCCChhHHH
Q 012186          314 ---SSGLRHLSGLTNLESINLSFTGISDGSLRKLAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLFGARITDSGAA  390 (469)
Q Consensus       314 ---~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~  390 (469)
                         ......|.+|++|+.+.+.. .+......+|.+|++|+.+.+.. .++.....+|.+| +|+.+.+.+|........
T Consensus       287 ~~~~I~~~aF~~c~~L~~l~l~~-~i~~I~~~aF~~c~~L~~l~lp~-~l~~I~~~aF~~~-~L~~l~l~~n~~~~l~~~  363 (401)
T 4fdw_A          287 PEAMIHPYCLEGCPKLARFEIPE-SIRILGQGLLGGNRKVTQLTIPA-NVTQINFSAFNNT-GIKEVKVEGTTPPQVFEK  363 (401)
T ss_dssp             TTCEECTTTTTTCTTCCEECCCT-TCCEECTTTTTTCCSCCEEEECT-TCCEECTTSSSSS-CCCEEEECCSSCCBCCCS
T ss_pred             cccEECHHHhhCCccCCeEEeCC-ceEEEhhhhhcCCCCccEEEECc-cccEEcHHhCCCC-CCCEEEEcCCCCcccccc
Confidence               33445567777777777773 46555666777778888888754 3555555667777 888888887766655445


Q ss_pred             HhHcCC-CCCeeeeCCCCC
Q 012186          391 YLRNFK-NLRSLEICGGGL  408 (469)
Q Consensus       391 ~~~~~~-~L~~L~l~~~~~  408 (469)
                      .+..++ .++.|.+..+.+
T Consensus       364 ~F~~~~~~l~~l~vp~~~~  382 (401)
T 4fdw_A          364 VWYGFPDDITVIRVPAESV  382 (401)
T ss_dssp             SCCCSCTTCCEEEECGGGH
T ss_pred             cccCCCCCccEEEeCHHHH
Confidence            555553 677777776543

>4fs7_A Uncharacterized protein; leucine-rich repeats, protein binding, extracellular protein structural genomics; HET: MSE; 1.19A {Bacteroides ovatus}

Probab=99.45  E-value=4.5e-14  Score=132.23  Aligned_cols=306  Identities=16%  Similarity=0.148  Sum_probs=196.0

Q ss_pred             cCCCccEEEecCCCCChHhhHhhhcCCCCCEEecCCCcccChhHhHhhhCCCCCCEEeCCCCCcCcHHHHHHHhCCCCCC
Q 012186           55 QGSSLLSVDLSGSDVTDSGLIHLKDCSNLQSLDFNFCIQISDGGLEHLRGLSNLTSLSFRRNNAITAQGMKAFAGLINLV  134 (469)
Q Consensus        55 ~~~~l~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~l~~L~  134 (469)
                      .+.+|+++.+.. .++.....+|..|.+|+.+++..  .++.....+|..+.+|+.+.+...-  ......+|..+..+.
T Consensus        69 ~c~~L~~i~lp~-~i~~I~~~aF~~c~~L~~i~lp~--~l~~I~~~aF~~c~~L~~i~~p~~l--~~i~~~aF~~~~~~~  143 (394)
T 4fs7_A           69 GCRKVTEIKIPS-TVREIGEFAFENCSKLEIINIPD--SVKMIGRCTFSGCYALKSILLPLML--KSIGVEAFKGCDFKE  143 (394)
T ss_dssp             TCTTEEEEECCT-TCCEECTTTTTTCTTCCEECCCT--TCCEECTTTTTTCTTCCCCCCCTTC--CEECTTTTTTCCCSE
T ss_pred             CCCCceEEEeCC-CccCcchhHhhCCCCCcEEEeCC--CceEccchhhcccccchhhcccCce--eeecceeeecccccc
Confidence            467899999974 36655667899999999999975  3677777889999999998887542  233445566665544


Q ss_pred             EEecccccccccccccccCCCCccEEEccCCCCCChhhhhcccCCCCCCEEEecccccChhhhhhccCCCCCCeeeccCC
Q 012186          135 KLDLERCTRIHGGLVNLKGLMKLESLNIKWCNCITDSDMKPLSGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGC  214 (469)
Q Consensus       135 ~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~  214 (469)
                      .......  ......++..+++|+.+.+..  .........+.++.+|+.+.+..+ ++......+..+..|+.+.+..+
T Consensus       144 ~~~~~~~--~~i~~~aF~~c~~L~~i~l~~--~~~~I~~~~F~~c~~L~~i~l~~~-~~~I~~~~F~~~~~L~~i~~~~~  218 (394)
T 4fs7_A          144 ITIPEGV--TVIGDEAFATCESLEYVSLPD--SMETLHNGLFSGCGKLKSIKLPRN-LKIIRDYCFAECILLENMEFPNS  218 (394)
T ss_dssp             EECCTTC--CEECTTTTTTCTTCCEEECCT--TCCEECTTTTTTCTTCCBCCCCTT-CCEECTTTTTTCTTCCBCCCCTT
T ss_pred             cccCccc--cccchhhhcccCCCcEEecCC--ccceeccccccCCCCceEEEcCCC-ceEeCchhhccccccceeecCCC
Confidence            4443332  222345688999999999975  244455677888999999988765 44455567788889998888765


Q ss_pred             CCchhhHHhhhcCCCCcEEECCCCCCChhHHHHhhcCCCccEEEccCCCCchHHHHHhhCCCCCCEEecCCCCCChHHHH
Q 012186          215 PVTAACLDSLSALGSLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNLDSCGIGDEGLV  294 (469)
Q Consensus       215 ~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~  294 (469)
                      ....  ........+|+.+.+... ........+..+..++.+.+..+... .....+..+..++.+......+.   ..
T Consensus       219 ~~~i--~~~~~~~~~l~~i~ip~~-~~~i~~~~f~~~~~l~~~~~~~~~~~-i~~~~F~~~~~l~~~~~~~~~i~---~~  291 (394)
T 4fs7_A          219 LYYL--GDFALSKTGVKNIIIPDS-FTELGKSVFYGCTDLESISIQNNKLR-IGGSLFYNCSGLKKVIYGSVIVP---EK  291 (394)
T ss_dssp             CCEE--CTTTTTTCCCCEEEECTT-CCEECSSTTTTCSSCCEEEECCTTCE-ECSCTTTTCTTCCEEEECSSEEC---TT
T ss_pred             ceEe--ehhhcccCCCceEEECCC-ceecccccccccccceeEEcCCCcce-eeccccccccccceeccCceeec---cc
Confidence            3322  122334578888887643 23333345677888999988765432 23345677888888877654332   23


Q ss_pred             HhhCCCCCCEEeccCCCCChhhHHHhhCCCCCcEEecccCCCCchHHHhhhCCCCCcEEEccCCCCCHHHHHHHhcCCCC
Q 012186          295 NLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISDGSLRKLAGLSSLKSLNLDARQITDTGLAALTSLTGL  374 (469)
Q Consensus       295 ~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L  374 (469)
                      .+..+.+|+.+.+..+ +.......|.+|.+|+.+.+..+ +......+|.+|.+|+.+.+..+ ++..+..+|.+|++|
T Consensus       292 ~F~~~~~L~~i~l~~~-i~~I~~~aF~~c~~L~~i~lp~~-v~~I~~~aF~~c~~L~~i~lp~~-l~~I~~~aF~~C~~L  368 (394)
T 4fs7_A          292 TFYGCSSLTEVKLLDS-VKFIGEEAFESCTSLVSIDLPYL-VEEIGKRSFRGCTSLSNINFPLS-LRKIGANAFQGCINL  368 (394)
T ss_dssp             TTTTCTTCCEEEECTT-CCEECTTTTTTCTTCCEECCCTT-CCEECTTTTTTCTTCCEECCCTT-CCEECTTTBTTCTTC
T ss_pred             cccccccccccccccc-cceechhhhcCCCCCCEEEeCCc-ccEEhHHhccCCCCCCEEEECcc-ccEehHHHhhCCCCC
Confidence            4667778888877654 44444445666677777766532 44444445555566666655443 443334445555555


Q ss_pred             CEeecC
Q 012186          375 THLDLF  380 (469)
Q Consensus       375 ~~L~l~  380 (469)
                      +.+++.
T Consensus       369 ~~i~lp  374 (394)
T 4fs7_A          369 KKVELP  374 (394)
T ss_dssp             CEEEEE
T ss_pred             CEEEEC
Confidence            555553

>1a9n_A U2A', U2A'; complex (nuclear protein/RNA), RNA, snRNP, ribonucleoprotein, RNA binding protein/RNA complex; 2.38A {Homo sapiens} SCOP: c.10.2.4

Probab=99.45  E-value=3.2e-14  Score=117.10  Aligned_cols=108  Identities=19%  Similarity=0.297  Sum_probs=47.7

Q ss_pred             CCcEEEccCCCCCHHHHHHHhcCCCCCEeecCCCCCChhHHHHhHcCCCCCeeeeCCCCCCHHHH-HHHhcCCCCCeeec
Q 012186          349 SLKSLNLDARQITDTGLAALTSLTGLTHLDLFGARITDSGAAYLRNFKNLRSLEICGGGLTDAGV-KHIKDLSSLTLLNL  427 (469)
Q Consensus       349 ~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~-~~l~~~~~L~~L~l  427 (469)
                      +|+.|++++|.++..  ..+..+++|++|++++|.+++..+..+..+++|+.|++++|.+..... ..+..+++|+.|++
T Consensus        43 ~L~~L~Ls~N~l~~~--~~l~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~i~~~~~~~~l~~l~~L~~L~l  120 (176)
T 1a9n_A           43 QFDAIDFSDNEIRKL--DGFPLLRRLKTLLVNNNRICRIGEGLDQALPDLTELILTNNSLVELGDLDPLASLKSLTYLCI  120 (176)
T ss_dssp             CCSEEECCSSCCCEE--CCCCCCSSCCEEECCSSCCCEECSCHHHHCTTCCEEECCSCCCCCGGGGGGGGGCTTCCEEEC
T ss_pred             CCCEEECCCCCCCcc--cccccCCCCCEEECCCCcccccCcchhhcCCCCCEEECCCCcCCcchhhHhhhcCCCCCEEEe
Confidence            444444444444432  233344444444444444444333333444555555555554443221 13444555555555


Q ss_pred             cCCCCCChhHHH---HHHhCcccccccccCCCCCH
Q 012186          428 SQNCNLTDKTLE---LISGLTGLVSLNVSNSRITS  459 (469)
Q Consensus       428 ~~~~~l~~~~~~---~l~~l~~L~~L~l~~~~~~~  459 (469)
                      ++| .+......   .+..+++|+.|++++|...+
T Consensus       121 ~~N-~i~~~~~~~~~~~~~l~~L~~Ld~~~n~~~~  154 (176)
T 1a9n_A          121 LRN-PVTNKKHYRLYVIYKVPQVRVLDFQKVKLKE  154 (176)
T ss_dssp             CSS-GGGGSTTHHHHHHHHCTTCSEETTEECCHHH
T ss_pred             cCC-CCCCcHhHHHHHHHHCCccceeCCCcCCHHH
Confidence            555 23322211   24455555555555555443

>1w8a_A SLIT protein; signaling protein, secreted protein, AXON guidance, leucine-rich repeat glycoprotein, EGF-like domain, signal protein; 2.8A {Drosophila melanogaster} SCOP: c.10.2.7

Probab=99.40  E-value=1.8e-14  Score=120.31  Aligned_cols=127  Identities=17%  Similarity=0.162  Sum_probs=102.6

Q ss_pred             CCEEeccCCCCChhhHHHhhCCCCCcEEecccCCCCchHHH-hhhCCCCCcEEEccCCCCCHHHHHHHhcCCCCCEeecC
Q 012186          302 LKCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISDGSLR-KLAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLF  380 (469)
Q Consensus       302 L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~-~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~  380 (469)
                      .+.++++++.+..... .  -.++++.|++++|.+....+. .+..+++|+.|++++|.++...+..+..+++|++|+++
T Consensus        10 ~~~l~~s~~~l~~ip~-~--~~~~l~~L~l~~n~i~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls   86 (192)
T 1w8a_A           10 GTTVDCTGRGLKEIPR-D--IPLHTTELLLNDNELGRISSDGLFGRLPHLVKLELKRNQLTGIEPNAFEGASHIQELQLG   86 (192)
T ss_dssp             TTEEECTTSCCSSCCS-C--CCTTCSEEECCSCCCCSBCCSCSGGGCTTCCEEECCSSCCCCBCTTTTTTCTTCCEEECC
T ss_pred             CCEEEcCCCCcCcCcc-C--CCCCCCEEECCCCcCCccCCccccccCCCCCEEECCCCCCCCcCHhHcCCcccCCEEECC
Confidence            3678888887755332 1  234889999999988776543 47788899999999999888777778888999999999


Q ss_pred             CCCCChhHHHHhHcCCCCCeeeeCCCCCCHHHHHHHhcCCCCCeeeccCCC
Q 012186          381 GARITDSGAAYLRNFKNLRSLEICGGGLTDAGVKHIKDLSSLTLLNLSQNC  431 (469)
Q Consensus       381 ~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~  431 (469)
                      +|++++..+..+..+++|+.|++++|++++..|..+..+++|++|++++|+
T Consensus        87 ~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~  137 (192)
T 1w8a_A           87 ENKIKEISNKMFLGLHQLKTLNLYDNQISCVMPGSFEHLNSLTSLNLASNP  137 (192)
T ss_dssp             SCCCCEECSSSSTTCTTCCEEECCSSCCCEECTTSSTTCTTCCEEECTTCC
T ss_pred             CCcCCccCHHHhcCCCCCCEEECCCCcCCeeCHHHhhcCCCCCEEEeCCCC
Confidence            999988877778888999999999999888877788888899999999984

>1ds9_A Outer arm dynein; leucine-rich repeat, beta-BETA-alpha cylinder, flagella, contractIle protein; NMR {Chlamydomonas reinhardtii} SCOP: c.10.3.1 PDB: 1m9l_A

Probab=99.38  E-value=5.7e-15  Score=124.19  Aligned_cols=133  Identities=23%  Similarity=0.253  Sum_probs=78.0

Q ss_pred             HhhCCCCCcEEecccCCCCchHHHhhhCCCCCcEEEccCCCCCHHHHHHHhcCCCCCEeecCCCCCChhHHHHhHcCCCC
Q 012186          319 HLSGLTNLESINLSFTGISDGSLRKLAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLFGARITDSGAAYLRNFKNL  398 (469)
Q Consensus       319 ~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L  398 (469)
                      .+..+++|++|++++|.+... + .+..+++|+.|++++|.++.. +..+..+++|++|++++|.+++. + .+..+++|
T Consensus        43 ~~~~l~~L~~L~ls~n~l~~l-~-~~~~l~~L~~L~l~~n~l~~l-~~~~~~~~~L~~L~L~~N~l~~l-~-~~~~l~~L  117 (198)
T 1ds9_A           43 TLSTLKACKHLALSTNNIEKI-S-SLSGMENLRILSLGRNLIKKI-ENLDAVADTLEELWISYNQIASL-S-GIEKLVNL  117 (198)
T ss_dssp             HHHHTTTCSEEECSEEEESCC-C-CHHHHTTCCEEEEEEEEECSC-SSHHHHHHHCSEEEEEEEECCCH-H-HHHHHHHS
T ss_pred             HHhcCCCCCEEECCCCCCccc-c-ccccCCCCCEEECCCCCcccc-cchhhcCCcCCEEECcCCcCCcC-C-ccccCCCC
Confidence            455556666666666555442 2 455556666666666655533 23334456666666666666663 2 45566667


Q ss_pred             CeeeeCCCCCCHHHH-HHHhcCCCCCeeeccCCCCCChhHH----------HHHHhCcccccccccCCCCCH
Q 012186          399 RSLEICGGGLTDAGV-KHIKDLSSLTLLNLSQNCNLTDKTL----------ELISGLTGLVSLNVSNSRITS  459 (469)
Q Consensus       399 ~~L~l~~~~~~~~~~-~~l~~~~~L~~L~l~~~~~l~~~~~----------~~l~~l~~L~~L~l~~~~~~~  459 (469)
                      +.|++++|.++...+ ..+..+++|++|++++| .+....+          ..+..+++|+.|+  ++++++
T Consensus       118 ~~L~l~~N~i~~~~~~~~l~~l~~L~~L~l~~N-~l~~~~~~~~~~~~~~~~~~~~l~~L~~Ld--~~~i~~  186 (198)
T 1ds9_A          118 RVLYMSNNKITNWGEIDKLAALDKLEDLLLAGN-PLYNDYKENNATSEYRIEVVKRLPNLKKLD--GMPVDV  186 (198)
T ss_dssp             SEEEESEEECCCHHHHHHHTTTTTCSEEEECSC-HHHHHHHTTTTHHHHHHHHHHHCSSCSEEC--CGGGTT
T ss_pred             CEEECCCCcCCchhHHHHHhcCCCCCEEEecCC-ccccccccccchHHHHHHHHHhCCCcEEEC--CcccCH
Confidence            777777766665433 45566677777777777 4433322          2356778888776  555554

>1a9n_A U2A', U2A'; complex (nuclear protein/RNA), RNA, snRNP, ribonucleoprotein, RNA binding protein/RNA complex; 2.38A {Homo sapiens} SCOP: c.10.2.4

Probab=99.38  E-value=2.5e-13  Score=111.69  Aligned_cols=128  Identities=21%  Similarity=0.233  Sum_probs=71.2

Q ss_pred             CCCCCEEeccCCCCChhhHHHhhC-CCCCcEEecccCCCCchHHHhhhCCCCCcEEEccCCCCCHHHHHHHhcCCCCCEe
Q 012186          299 LCNLKCLELSDTQVGSSGLRHLSG-LTNLESINLSFTGISDGSLRKLAGLSSLKSLNLDARQITDTGLAALTSLTGLTHL  377 (469)
Q Consensus       299 ~~~L~~L~l~~~~~~~~~~~~~~~-~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L  377 (469)
                      +++|+.|++++|.+... + .+.. .++|+.|++++|.+.+.  ..+..+++|+.|++++|.++...+..+..+++|++|
T Consensus        18 ~~~L~~L~l~~n~l~~i-~-~~~~~~~~L~~L~Ls~N~l~~~--~~l~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L   93 (176)
T 1a9n_A           18 AVRDRELDLRGYKIPVI-E-NLGATLDQFDAIDFSDNEIRKL--DGFPLLRRLKTLLVNNNRICRIGEGLDQALPDLTEL   93 (176)
T ss_dssp             TTSCEEEECTTSCCCSC-C-CGGGGTTCCSEEECCSSCCCEE--CCCCCCSSCCEEECCSSCCCEECSCHHHHCTTCCEE
T ss_pred             cCCceEEEeeCCCCchh-H-HhhhcCCCCCEEECCCCCCCcc--cccccCCCCCEEECCCCcccccCcchhhcCCCCCEE
Confidence            34444455544444432 1 1222 23555555555555543  345555666666666666665433444566666666


Q ss_pred             ecCCCCCChhHH-HHhHcCCCCCeeeeCCCCCCHHHHH---HHhcCCCCCeeeccCC
Q 012186          378 DLFGARITDSGA-AYLRNFKNLRSLEICGGGLTDAGVK---HIKDLSSLTLLNLSQN  430 (469)
Q Consensus       378 ~l~~~~~~~~~~-~~~~~~~~L~~L~l~~~~~~~~~~~---~l~~~~~L~~L~l~~~  430 (469)
                      ++++|.++.... ..+..+++|+.|++++|.++.....   .+..+++|+.|++++|
T Consensus        94 ~L~~N~i~~~~~~~~l~~l~~L~~L~l~~N~i~~~~~~~~~~~~~l~~L~~Ld~~~n  150 (176)
T 1a9n_A           94 ILTNNSLVELGDLDPLASLKSLTYLCILRNPVTNKKHYRLYVIYKVPQVRVLDFQKV  150 (176)
T ss_dssp             ECCSCCCCCGGGGGGGGGCTTCCEEECCSSGGGGSTTHHHHHHHHCTTCSEETTEEC
T ss_pred             ECCCCcCCcchhhHhhhcCCCCCEEEecCCCCCCcHhHHHHHHHHCCccceeCCCcC
Confidence            666666655322 2556667777777777666543221   3566777777777777

>2o6r_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 2.30A {Eptatretus burgeri}

Probab=99.37  E-value=9.9e-14  Score=114.35  Aligned_cols=132  Identities=17%  Similarity=0.130  Sum_probs=105.6

Q ss_pred             CCCEEeccCCCCChhhHHHhhCCCCCcEEecccCCCCchHHHhhhCCCCCcEEEccCCCCCHHHHHHHhcCCCCCEeecC
Q 012186          301 NLKCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISDGSLRKLAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLF  380 (469)
Q Consensus       301 ~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~  380 (469)
                      +.+.+++.++.+....   ....++|+.|++++|.+....+..+..+++|+.|++++|.++......+..+++|++|+++
T Consensus         8 ~~~~l~~~~~~l~~~p---~~~~~~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~   84 (177)
T 2o6r_A            8 SGTEIRCNSKGLTSVP---TGIPSSATRLELESNKLQSLPHGVFDKLTQLTKLSLSQNQIQSLPDGVFDKLTKLTILYLH   84 (177)
T ss_dssp             ETTEEECCSSCCSSCC---TTCCTTCSEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECC
T ss_pred             CCCEEEecCCCCccCC---CCCCCCCcEEEeCCCcccEeCHHHhcCcccccEEECCCCcceEeChhHccCCCccCEEECC
Confidence            3567888887766543   2234789999999998887666677888999999999999887766667788999999999


Q ss_pred             CCCCChhHHHHhHcCCCCCeeeeCCCCCCHHHHHHHhcCCCCCeeeccCCCCCChh
Q 012186          381 GARITDSGAAYLRNFKNLRSLEICGGGLTDAGVKHIKDLSSLTLLNLSQNCNLTDK  436 (469)
Q Consensus       381 ~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~l~~~  436 (469)
                      +|.+++..+..+..+++|+.|++++|.+++..+..+..+++|++|++++| .+...
T Consensus        85 ~N~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~l~~N-~~~~~  139 (177)
T 2o6r_A           85 ENKLQSLPNGVFDKLTQLKELALDTNQLKSVPDGIFDRLTSLQKIWLHTN-PWDCS  139 (177)
T ss_dssp             SSCCCCCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSS-CBCCC
T ss_pred             CCCccccCHHHhhCCcccCEEECcCCcceEeCHHHhcCCcccCEEEecCC-Ceecc
Confidence            99998877777788899999999999988776666677899999999999 44443

>2wfh_A SLIT homolog 2 protein C-product; developmental protein, neurogenesis, splicing, glycoprotein, leucine-rich repeat, disulfide bond, differentiation; 1.80A {Homo sapiens}

Probab=99.36  E-value=1.2e-13  Score=115.28  Aligned_cols=125  Identities=18%  Similarity=0.193  Sum_probs=98.2

Q ss_pred             CEEeccCCCCChhhHHHhhCCCCCcEEecccCCCCchHHHhhhCCCCCcEEEccCCCCCHHHHHHHhcCCCCCEeecCCC
Q 012186          303 KCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISDGSLRKLAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLFGA  382 (469)
Q Consensus       303 ~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~  382 (469)
                      +.++++++.+.....   .-.++|+.|++++|.+.... ..+..+++|+.|++++|.++......+..+++|++|++++|
T Consensus        13 ~~l~~~~~~l~~ip~---~~~~~l~~L~L~~n~i~~ip-~~~~~l~~L~~L~Ls~N~i~~i~~~~f~~l~~L~~L~Ls~N   88 (193)
T 2wfh_A           13 TVVRCSNKGLKVLPK---GIPRDVTELYLDGNQFTLVP-KELSNYKHLTLIDLSNNRISTLSNQSFSNMTQLLTLILSYN   88 (193)
T ss_dssp             TEEECTTSCCSSCCS---CCCTTCCEEECCSSCCCSCC-GGGGGCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSS
T ss_pred             CEEEcCCCCCCcCCC---CCCCCCCEEECCCCcCchhH-HHhhcccCCCEEECCCCcCCEeCHhHccCCCCCCEEECCCC
Confidence            567777776665331   12468888998888887543 67778888888888888888876677888888888888888


Q ss_pred             CCChhHHHHhHcCCCCCeeeeCCCCCCHHHHHHHhcCCCCCeeeccCCC
Q 012186          383 RITDSGAAYLRNFKNLRSLEICGGGLTDAGVKHIKDLSSLTLLNLSQNC  431 (469)
Q Consensus       383 ~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~  431 (469)
                      .++...+..+..+++|+.|++++|.++...+..|..+++|+.|++++|+
T Consensus        89 ~l~~i~~~~f~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~  137 (193)
T 2wfh_A           89 RLRCIPPRTFDGLKSLRLLSLHGNDISVVPEGAFNDLSALSHLAIGANP  137 (193)
T ss_dssp             CCCBCCTTTTTTCTTCCEEECCSSCCCBCCTTTTTTCTTCCEEECCSSC
T ss_pred             ccCEeCHHHhCCCCCCCEEECCCCCCCeeChhhhhcCccccEEEeCCCC
Confidence            8888777778888888888888888887766667778888888888885

>4b8c_D Glucose-repressible alcohol dehydrogenase transcr effector; hydrolase-cell cycle complex; 3.41A {Saccharomyces cerevisiae S288C}

Probab=99.35  E-value=3.9e-14  Score=142.40  Aligned_cols=137  Identities=15%  Similarity=0.046  Sum_probs=71.2

Q ss_pred             HHhhCCCCCCEEecCCCCCChHHHHHhhCCCCCCEEeccCCCCChhhHHHhhCCCCCcEEecccCCCCchHHHhhhCCCC
Q 012186          270 VHLKGLTNLESLNLDSCGIGDEGLVNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISDGSLRKLAGLSS  349 (469)
Q Consensus       270 ~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~  349 (469)
                      ..+..++.|+.|++++|.+... +..+..+++|++|++++|.+. ..+..++.+++|+.|++++|.+.. .+..+..+++
T Consensus       218 ~~~~~l~~L~~L~Ls~n~l~~l-~~~~~~l~~L~~L~Ls~N~l~-~lp~~~~~l~~L~~L~Ls~N~l~~-lp~~~~~l~~  294 (727)
T 4b8c_D          218 DSKYDDQLWHALDLSNLQIFNI-SANIFKYDFLTRLYLNGNSLT-ELPAEIKNLSNLRVLDLSHNRLTS-LPAELGSCFQ  294 (727)
T ss_dssp             ----CCCCCCEEECTTSCCSCC-CGGGGGCCSCSCCBCTTSCCS-CCCGGGGGGTTCCEEECTTSCCSS-CCSSGGGGTT
T ss_pred             hhhccCCCCcEEECCCCCCCCC-ChhhcCCCCCCEEEeeCCcCc-ccChhhhCCCCCCEEeCcCCcCCc-cChhhcCCCC
Confidence            3445555566666666555422 223335556666666666555 233445566666666666665552 3445555666


Q ss_pred             CcEEEccCCCCCHHHHHHHhcCCCCCEeecCCCCCChhHHHHhHcCCC-CCeeeeCCCCCCH
Q 012186          350 LKSLNLDARQITDTGLAALTSLTGLTHLDLFGARITDSGAAYLRNFKN-LRSLEICGGGLTD  410 (469)
Q Consensus       350 L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~-L~~L~l~~~~~~~  410 (469)
                      |+.|++++|.++.. +..+..+++|+.|++++|.+++.+|..+..+.. +..+++++|.+++
T Consensus       295 L~~L~L~~N~l~~l-p~~~~~l~~L~~L~L~~N~l~~~~p~~~~~~~~~~~~l~l~~N~l~~  355 (727)
T 4b8c_D          295 LKYFYFFDNMVTTL-PWEFGNLCNLQFLGVEGNPLEKQFLKILTEKSVTGLIFYLRDNRPEI  355 (727)
T ss_dssp             CSEEECCSSCCCCC-CSSTTSCTTCCCEECTTSCCCSHHHHHHHHHHHHHHHHHHHHCCCCC
T ss_pred             CCEEECCCCCCCcc-ChhhhcCCCccEEeCCCCccCCCChHHHhhcchhhhHHhhccCcccC
Confidence            66666666666543 333556666666666666666655555433211 1124455555543

>1w8a_A SLIT protein; signaling protein, secreted protein, AXON guidance, leucine-rich repeat glycoprotein, EGF-like domain, signal protein; 2.8A {Drosophila melanogaster} SCOP: c.10.2.7

Probab=99.33  E-value=1.9e-13  Score=114.02  Aligned_cols=129  Identities=16%  Similarity=0.258  Sum_probs=111.5

Q ss_pred             CEEecCCCCCChHHHHHhhCCCCCCEEeccCCCCChhhHH-HhhCCCCCcEEecccCCCCchHHHhhhCCCCCcEEEccC
Q 012186          279 ESLNLDSCGIGDEGLVNLTGLCNLKCLELSDTQVGSSGLR-HLSGLTNLESINLSFTGISDGSLRKLAGLSSLKSLNLDA  357 (469)
Q Consensus       279 ~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~-~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~  357 (469)
                      +.++++++.+...+ ..+  .++++.|++.+|.+....+. .++.+++|++|++++|.+....+..+..+++|+.|++++
T Consensus        11 ~~l~~s~~~l~~ip-~~~--~~~l~~L~l~~n~i~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~   87 (192)
T 1w8a_A           11 TTVDCTGRGLKEIP-RDI--PLHTTELLLNDNELGRISSDGLFGRLPHLVKLELKRNQLTGIEPNAFEGASHIQELQLGE   87 (192)
T ss_dssp             TEEECTTSCCSSCC-SCC--CTTCSEEECCSCCCCSBCCSCSGGGCTTCCEEECCSSCCCCBCTTTTTTCTTCCEEECCS
T ss_pred             CEEEcCCCCcCcCc-cCC--CCCCCEEECCCCcCCccCCccccccCCCCCEEECCCCCCCCcCHhHcCCcccCCEEECCC
Confidence            78899988876432 222  34899999999988876553 478999999999999999988888899999999999999


Q ss_pred             CCCCHHHHHHHhcCCCCCEeecCCCCCChhHHHHhHcCCCCCeeeeCCCCCCH
Q 012186          358 RQITDTGLAALTSLTGLTHLDLFGARITDSGAAYLRNFKNLRSLEICGGGLTD  410 (469)
Q Consensus       358 ~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~  410 (469)
                      |.++...+..+..+++|++|++++|++++..+..+..+++|+.|++++|.+..
T Consensus        88 N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~c  140 (192)
T 1w8a_A           88 NKIKEISNKMFLGLHQLKTLNLYDNQISCVMPGSFEHLNSLTSLNLASNPFNC  140 (192)
T ss_dssp             CCCCEECSSSSTTCTTCCEEECCSSCCCEECTTSSTTCTTCCEEECTTCCBCC
T ss_pred             CcCCccCHHHhcCCCCCCEEECCCCcCCeeCHHHhhcCCCCCEEEeCCCCccC
Confidence            99998877778899999999999999999888889999999999999998874

>2o6r_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 2.30A {Eptatretus burgeri}

Probab=99.33  E-value=7.5e-13  Score=109.03  Aligned_cols=132  Identities=17%  Similarity=0.127  Sum_probs=105.1

Q ss_pred             CCEEecCCCCCChHHHHHhhCCCCCCEEeccCCCCChhhHHHhhCCCCCcEEecccCCCCchHHHhhhCCCCCcEEEccC
Q 012186          278 LESLNLDSCGIGDEGLVNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISDGSLRKLAGLSSLKSLNLDA  357 (469)
Q Consensus       278 L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~  357 (469)
                      .+.++++++.+...+   ....++|+.|++++|.+.......+..+++|++|++++|.+....+..+..+++|+.|++++
T Consensus         9 ~~~l~~~~~~l~~~p---~~~~~~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~   85 (177)
T 2o6r_A            9 GTEIRCNSKGLTSVP---TGIPSSATRLELESNKLQSLPHGVFDKLTQLTKLSLSQNQIQSLPDGVFDKLTKLTILYLHE   85 (177)
T ss_dssp             TTEEECCSSCCSSCC---TTCCTTCSEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCS
T ss_pred             CCEEEecCCCCccCC---CCCCCCCcEEEeCCCcccEeCHHHhcCcccccEEECCCCcceEeChhHccCCCccCEEECCC
Confidence            467788777765432   12346889999999988776666678889999999999988877666678889999999999


Q ss_pred             CCCCHHHHHHHhcCCCCCEeecCCCCCChhHHHHhHcCCCCCeeeeCCCCCCHHH
Q 012186          358 RQITDTGLAALTSLTGLTHLDLFGARITDSGAAYLRNFKNLRSLEICGGGLTDAG  412 (469)
Q Consensus       358 ~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~  412 (469)
                      |.++......+..+++|++|++++|.+++..+..+..+++|+.|++++|.+....
T Consensus        86 N~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~l~~N~~~~~~  140 (177)
T 2o6r_A           86 NKLQSLPNGVFDKLTQLKELALDTNQLKSVPDGIFDRLTSLQKIWLHTNPWDCSC  140 (177)
T ss_dssp             SCCCCCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSCBCCCH
T ss_pred             CCccccCHHHhhCCcccCEEECcCCcceEeCHHHhcCCcccCEEEecCCCeeccC
Confidence            9888776666778899999999999888876666778899999999999887543

>2wfh_A SLIT homolog 2 protein C-product; developmental protein, neurogenesis, splicing, glycoprotein, leucine-rich repeat, disulfide bond, differentiation; 1.80A {Homo sapiens}

Probab=99.30  E-value=1.6e-12  Score=108.36  Aligned_cols=127  Identities=20%  Similarity=0.180  Sum_probs=107.5

Q ss_pred             CEEecCCCCCChHHHHHhhCCCCCCEEeccCCCCChhhHHHhhCCCCCcEEecccCCCCchHHHhhhCCCCCcEEEccCC
Q 012186          279 ESLNLDSCGIGDEGLVNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISDGSLRKLAGLSSLKSLNLDAR  358 (469)
Q Consensus       279 ~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~  358 (469)
                      +.++++++.+...+ ..  -.++++.|++.+|.+.... ..+..+++|+.|++++|.+....+..+..+++|+.|++++|
T Consensus        13 ~~l~~~~~~l~~ip-~~--~~~~l~~L~L~~n~i~~ip-~~~~~l~~L~~L~Ls~N~i~~i~~~~f~~l~~L~~L~Ls~N   88 (193)
T 2wfh_A           13 TVVRCSNKGLKVLP-KG--IPRDVTELYLDGNQFTLVP-KELSNYKHLTLIDLSNNRISTLSNQSFSNMTQLLTLILSYN   88 (193)
T ss_dssp             TEEECTTSCCSSCC-SC--CCTTCCEEECCSSCCCSCC-GGGGGCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSS
T ss_pred             CEEEcCCCCCCcCC-CC--CCCCCCEEECCCCcCchhH-HHhhcccCCCEEECCCCcCCEeCHhHccCCCCCCEEECCCC
Confidence            57888888776432 22  2368999999999887544 67889999999999999998887788899999999999999


Q ss_pred             CCCHHHHHHHhcCCCCCEeecCCCCCChhHHHHhHcCCCCCeeeeCCCCCC
Q 012186          359 QITDTGLAALTSLTGLTHLDLFGARITDSGAAYLRNFKNLRSLEICGGGLT  409 (469)
Q Consensus       359 ~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~  409 (469)
                      .++...+..+..+++|+.|++++|.++...+..+..+++|+.|++++|.+.
T Consensus        89 ~l~~i~~~~f~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~~~  139 (193)
T 2wfh_A           89 RLRCIPPRTFDGLKSLRLLSLHGNDISVVPEGAFNDLSALSHLAIGANPLY  139 (193)
T ss_dssp             CCCBCCTTTTTTCTTCCEEECCSSCCCBCCTTTTTTCTTCCEEECCSSCEE
T ss_pred             ccCEeCHHHhCCCCCCCEEECCCCCCCeeChhhhhcCccccEEEeCCCCee
Confidence            999887778889999999999999999877777888999999999998764

>4b8c_D Glucose-repressible alcohol dehydrogenase transcr effector; hydrolase-cell cycle complex; 3.41A {Saccharomyces cerevisiae S288C}

Probab=99.30  E-value=1.6e-13  Score=138.00  Aligned_cols=138  Identities=17%  Similarity=0.112  Sum_probs=72.5

Q ss_pred             HHhhcCCCccEEEccCCCCchHHHHHhhCCCCCCEEecCCCCCChHHHHHhhCCCCCCEEeccCCCCChhhHHHhhCCCC
Q 012186          246 EKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNLDSCGIGDEGLVNLTGLCNLKCLELSDTQVGSSGLRHLSGLTN  325 (469)
Q Consensus       246 ~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~  325 (469)
                      ..+..++.|+.|++++|.+.. .+..+..+++|+.|++++|.+. ..+..+..+++|+.|++++|.+.. .+..++.+++
T Consensus       218 ~~~~~l~~L~~L~Ls~n~l~~-l~~~~~~l~~L~~L~Ls~N~l~-~lp~~~~~l~~L~~L~Ls~N~l~~-lp~~~~~l~~  294 (727)
T 4b8c_D          218 DSKYDDQLWHALDLSNLQIFN-ISANIFKYDFLTRLYLNGNSLT-ELPAEIKNLSNLRVLDLSHNRLTS-LPAELGSCFQ  294 (727)
T ss_dssp             ----CCCCCCEEECTTSCCSC-CCGGGGGCCSCSCCBCTTSCCS-CCCGGGGGGTTCCEEECTTSCCSS-CCSSGGGGTT
T ss_pred             hhhccCCCCcEEECCCCCCCC-CChhhcCCCCCCEEEeeCCcCc-ccChhhhCCCCCCEEeCcCCcCCc-cChhhcCCCC
Confidence            344555556666666555542 2233335566666666666555 223445556666666666665552 3444566666


Q ss_pred             CcEEecccCCCCchHHHhhhCCCCCcEEEccCCCCCHHHHHHHhcCC-CCCEeecCCCCCChh
Q 012186          326 LESINLSFTGISDGSLRKLAGLSSLKSLNLDARQITDTGLAALTSLT-GLTHLDLFGARITDS  387 (469)
Q Consensus       326 L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~-~L~~L~l~~~~~~~~  387 (469)
                      |++|++++|.+... +..+..+++|+.|++++|.+++..+..+..+. .+..+++.+|.+++.
T Consensus       295 L~~L~L~~N~l~~l-p~~~~~l~~L~~L~L~~N~l~~~~p~~~~~~~~~~~~l~l~~N~l~~~  356 (727)
T 4b8c_D          295 LKYFYFFDNMVTTL-PWEFGNLCNLQFLGVEGNPLEKQFLKILTEKSVTGLIFYLRDNRPEIP  356 (727)
T ss_dssp             CSEEECCSSCCCCC-CSSTTSCTTCCCEECTTSCCCSHHHHHHHHHHHHHHHHHHHHCCCCCC
T ss_pred             CCEEECCCCCCCcc-ChhhhcCCCccEEeCCCCccCCCChHHHhhcchhhhHHhhccCcccCc
Confidence            66666666665532 33456666666666666666655554443221 112245555555543

>1ds9_A Outer arm dynein; leucine-rich repeat, beta-BETA-alpha cylinder, flagella, contractIle protein; NMR {Chlamydomonas reinhardtii} SCOP: c.10.3.1 PDB: 1m9l_A

Probab=99.30  E-value=5e-14  Score=118.38  Aligned_cols=127  Identities=26%  Similarity=0.285  Sum_probs=79.6

Q ss_pred             HhhCCCCCCEEeccCCCCChhhHHHhhCCCCCcEEecccCCCCchHHHhhhCCCCCcEEEccCCCCCHHHHHHHhcCCCC
Q 012186          295 NLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISDGSLRKLAGLSSLKSLNLDARQITDTGLAALTSLTGL  374 (469)
Q Consensus       295 ~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L  374 (469)
                      .+..+++|++|++++|.+....  .+..+++|+.|++++|.+... +..+..+++|+.|++++|.++...  .+..+++|
T Consensus        43 ~~~~l~~L~~L~ls~n~l~~l~--~~~~l~~L~~L~l~~n~l~~l-~~~~~~~~~L~~L~L~~N~l~~l~--~~~~l~~L  117 (198)
T 1ds9_A           43 TLSTLKACKHLALSTNNIEKIS--SLSGMENLRILSLGRNLIKKI-ENLDAVADTLEELWISYNQIASLS--GIEKLVNL  117 (198)
T ss_dssp             HHHHTTTCSEEECSEEEESCCC--CHHHHTTCCEEEEEEEEECSC-SSHHHHHHHCSEEEEEEEECCCHH--HHHHHHHS
T ss_pred             HHhcCCCCCEEECCCCCCcccc--ccccCCCCCEEECCCCCcccc-cchhhcCCcCCEEECcCCcCCcCC--ccccCCCC
Confidence            4555666666666666554422  455666667777766655532 233444566777777777776642  46666777


Q ss_pred             CEeecCCCCCChhHH-HHhHcCCCCCeeeeCCCCCCHHHHH----------HHhcCCCCCeee
Q 012186          375 THLDLFGARITDSGA-AYLRNFKNLRSLEICGGGLTDAGVK----------HIKDLSSLTLLN  426 (469)
Q Consensus       375 ~~L~l~~~~~~~~~~-~~~~~~~~L~~L~l~~~~~~~~~~~----------~l~~~~~L~~L~  426 (469)
                      +.|++++|.+++..+ ..+..+++|+.|++++|.+.+..|.          .+..+++|+.|+
T Consensus       118 ~~L~l~~N~i~~~~~~~~l~~l~~L~~L~l~~N~l~~~~~~~~~~~~~~~~~~~~l~~L~~Ld  180 (198)
T 1ds9_A          118 RVLYMSNNKITNWGEIDKLAALDKLEDLLLAGNPLYNDYKENNATSEYRIEVVKRLPNLKKLD  180 (198)
T ss_dssp             SEEEESEEECCCHHHHHHHTTTTTCSEEEECSCHHHHHHHTTTTHHHHHHHHHHHCSSCSEEC
T ss_pred             CEEECCCCcCCchhHHHHHhcCCCCCEEEecCCccccccccccchHHHHHHHHHhCCCcEEEC
Confidence            777777777776443 4566777777777777776554332          366788888886

>2ra8_A Uncharacterized protein Q64V53_bacfr; WGR domain, LRR domain, leucine rich repeats, BFR43, structural genomics, PSI-2; 1.95A {Bacteroides fragilis}

Probab=99.29  E-value=2.7e-11  Score=110.71  Aligned_cols=144  Identities=21%  Similarity=0.236  Sum_probs=74.4

Q ss_pred             hhCCCCCcEEecccCCCCchHHHhhhCCCCCcEEEccCCCCCHHHHHHHh--cCCCCCEeecCC--CCC-Ch----hHHH
Q 012186          320 LSGLTNLESINLSFTGISDGSLRKLAGLSSLKSLNLDARQITDTGLAALT--SLTGLTHLDLFG--ARI-TD----SGAA  390 (469)
Q Consensus       320 ~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~--~~~~L~~L~l~~--~~~-~~----~~~~  390 (469)
                      +..+|+|+.|.+.++.-....  .+ ..++|+.|.+..+.++......+.  .+|+|++|+++.  +.. .+    .+..
T Consensus       168 l~~~P~L~~L~L~g~~~l~l~--~~-~~~~L~~L~L~~~~l~~~~l~~l~~~~lp~L~~L~L~~~~~~~~~~~~~~~l~~  244 (362)
T 2ra8_A          168 LDAMPLLNNLKIKGTNNLSIG--KK-PRPNLKSLEIISGGLPDSVVEDILGSDLPNLEKLVLYVGVEDYGFDGDMNVFRP  244 (362)
T ss_dssp             HHTCTTCCEEEEECCBTCBCC--SC-BCTTCSEEEEECSBCCHHHHHHHHHSBCTTCCEEEEECBCGGGTCCSCGGGTGG
T ss_pred             HhcCCCCcEEEEeCCCCceec--cc-cCCCCcEEEEecCCCChHHHHHHHHccCCCCcEEEEeccccccccchhHHHHHH
Confidence            345555555555554111100  11 245666666666665555444443  456666666532  110 00    0001


Q ss_pred             Hh--HcCCCCCeeeeCCCCCCHHHHHHHh---cCCCCCeeeccCCCCCChhHHHHH----HhCcccccccccCCCCCHHH
Q 012186          391 YL--RNFKNLRSLEICGGGLTDAGVKHIK---DLSSLTLLNLSQNCNLTDKTLELI----SGLTGLVSLNVSNSRITSAG  461 (469)
Q Consensus       391 ~~--~~~~~L~~L~l~~~~~~~~~~~~l~---~~~~L~~L~l~~~~~l~~~~~~~l----~~l~~L~~L~l~~~~~~~~~  461 (469)
                      .+  ..+|+|+.|++.+|.+.+..+..+.   .+++|++|+++.| .+++..+..+    ..+++|+.|++++|.+++.+
T Consensus       245 ~l~~~~~p~Lr~L~L~~~~i~~~~~~~la~a~~~~~L~~LdLs~n-~L~d~G~~~L~~~L~~l~~L~~L~L~~n~i~d~~  323 (362)
T 2ra8_A          245 LFSKDRFPNLKWLGIVDAEEQNVVVEMFLESDILPQLETMDISAG-VLTDEGARLLLDHVDKIKHLKFINMKYNYLSDEM  323 (362)
T ss_dssp             GSCTTTCTTCCEEEEESCTTHHHHHHHHHHCSSGGGCSEEECCSS-CCBHHHHHHHHTTHHHHTTCSEEECCSBBCCHHH
T ss_pred             HHhcCCCCCcCEEeCCCCCCchHHHHHHHhCccCCCCCEEECCCC-CCChHHHHHHHhhcccCCcceEEECCCCcCCHHH
Confidence            11  2356666666666666654444343   3556777777666 5666443333    34566777777777777777


Q ss_pred             HHhhhh
Q 012186          462 LRHLNH  467 (469)
Q Consensus       462 ~~~l~~  467 (469)
                      ++.+++
T Consensus       324 ~~~l~~  329 (362)
T 2ra8_A          324 KKELQK  329 (362)
T ss_dssp             HHHHHH
T ss_pred             HHHHHH
Confidence            766665

>4gt6_A Cell surface protein; leucine rich repeats, putative protein binding, extracellula protein, structural genomics; HET: MSE; 1.80A {Faecalibacterium prausnitzii a2-165}

Probab=99.24  E-value=3.5e-11  Score=112.60  Aligned_cols=153  Identities=15%  Similarity=0.115  Sum_probs=71.6

Q ss_pred             HhhhcCC-CCCEEecCCCcccChhHhHhhhCCCCCCEEeCCCCC--cCcHHHHHHHhCCCCCCEEecccccccccccccc
Q 012186           75 IHLKDCS-NLQSLDFNFCIQISDGGLEHLRGLSNLTSLSFRRNN--AITAQGMKAFAGLINLVKLDLERCTRIHGGLVNL  151 (469)
Q Consensus        75 ~~~~~~~-~L~~L~l~~~~~~~~~~~~~l~~~~~L~~L~l~~~~--~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~l  151 (469)
                      .+|..|. .|+.+.+..  .++.....+|.+|.+|+.+.+..+.  .+......+|..+.+|+.+.+..+ .......++
T Consensus        57 ~aF~~~~~~L~sI~iP~--svt~Ig~~AF~~C~~L~~i~~~~n~p~~l~~Ig~~aF~~c~~L~~i~~~~~-~~~I~~~aF  133 (394)
T 4gt6_A           57 RVFCNYKYVLTSVQIPD--TVTEIGSNAFYNCTSLKRVTIQDNKPSCVKKIGRQAFMFCSELTDIPILDS-VTEIDSEAF  133 (394)
T ss_dssp             TTTTTCCSCCCEEEECT--TCCEECTTTTTTCTTCCEEEEGGGCCCCCCEECTTTTTTCTTCCBCGGGTT-CSEECTTTT
T ss_pred             hhccCCCCcCEEEEECC--CeeEEhHHHhhCCccCceEeecCCCCCeeeEechhhchhcccceeeccCCc-cceehhhhh
Confidence            4455553 466666654  3555556666666666666664321  122223344555666666555442 122222345


Q ss_pred             cCCCCccEEEccCCCCCChhhhhcccCCCCCCEEEecccccChhhhhhccCCCCCCeeeccCCCCchhhHHhhhcCCCCc
Q 012186          152 KGLMKLESLNIKWCNCITDSDMKPLSGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACLDSLSALGSLF  231 (469)
Q Consensus       152 ~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~L~  231 (469)
                      ..+.+|+.+.+..  .........+..+..|+.+.+..+ +.......|.. ..|+.+.+...- .......+..+.++.
T Consensus       134 ~~c~~L~~i~lp~--~~~~I~~~~F~~c~~L~~i~~~~~-~~~I~~~aF~~-~~l~~i~ip~~~-~~i~~~af~~c~~l~  208 (394)
T 4gt6_A          134 HHCEELDTVTIPE--GVTSVADGMFSYCYSLHTVTLPDS-VTAIEERAFTG-TALTQIHIPAKV-TRIGTNAFSECFALS  208 (394)
T ss_dssp             TTCTTCCEEECCT--TCCEECTTTTTTCTTCCEEECCTT-CCEECTTTTTT-CCCSEEEECTTC-CEECTTTTTTCTTCC
T ss_pred             hhhcccccccccc--eeeeecccceecccccccccccce-eeEeccccccc-cceeEEEECCcc-cccccchhhhccccc
Confidence            5566666666542  233333344555566666655433 22222223322 345555554331 111123344445555


Q ss_pred             EEEC
Q 012186          232 YLNL  235 (469)
Q Consensus       232 ~L~l  235 (469)
                      ....
T Consensus       209 ~~~~  212 (394)
T 4gt6_A          209 TITS  212 (394)
T ss_dssp             EEEE
T ss_pred             eecc
Confidence            4443

>4gt6_A Cell surface protein; leucine rich repeats, putative protein binding, extracellula protein, structural genomics; HET: MSE; 1.80A {Faecalibacterium prausnitzii a2-165}

Probab=99.18  E-value=7.8e-11  Score=110.19  Aligned_cols=323  Identities=15%  Similarity=0.156  Sum_probs=180.2

Q ss_pred             CCccEEEecCCCCChHhhHhhhcCCCCCEEecCCC--cccChhHhHhhhCCCCCCEEeCCCCCcCcHHHHHHHhCCCCCC
Q 012186           57 SSLLSVDLSGSDVTDSGLIHLKDCSNLQSLDFNFC--IQISDGGLEHLRGLSNLTSLSFRRNNAITAQGMKAFAGLINLV  134 (469)
Q Consensus        57 ~~l~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~--~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~l~~L~  134 (469)
                      ..++++.+..+ ++.....+|..|.+|+.+.+..+  ..++.....+|..|.+|+.+.+..+  +.......|..+.+|+
T Consensus        64 ~~L~sI~iP~s-vt~Ig~~AF~~C~~L~~i~~~~n~p~~l~~Ig~~aF~~c~~L~~i~~~~~--~~~I~~~aF~~c~~L~  140 (394)
T 4gt6_A           64 YVLTSVQIPDT-VTEIGSNAFYNCTSLKRVTIQDNKPSCVKKIGRQAFMFCSELTDIPILDS--VTEIDSEAFHHCEELD  140 (394)
T ss_dssp             SCCCEEEECTT-CCEECTTTTTTCTTCCEEEEGGGCCCCCCEECTTTTTTCTTCCBCGGGTT--CSEECTTTTTTCTTCC
T ss_pred             CcCEEEEECCC-eeEEhHHHhhCCccCceEeecCCCCCeeeEechhhchhcccceeeccCCc--cceehhhhhhhhcccc
Confidence            35889999754 66666688999999999998652  2466677788889999998888765  2344456778899999


Q ss_pred             EEecccccccccccccccCCCCccEEEccCCCCCChhhhhcccCCCCCCEEEecccccChhhhhhccCCCCCCeeeccCC
Q 012186          135 KLDLERCTRIHGGLVNLKGLMKLESLNIKWCNCITDSDMKPLSGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGC  214 (469)
Q Consensus       135 ~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~  214 (469)
                      .+.+... .......++..+..|+.+.+..  .+......++.. ..|+.+.+.... .......+..+..+........
T Consensus       141 ~i~lp~~-~~~I~~~~F~~c~~L~~i~~~~--~~~~I~~~aF~~-~~l~~i~ip~~~-~~i~~~af~~c~~l~~~~~~~~  215 (394)
T 4gt6_A          141 TVTIPEG-VTSVADGMFSYCYSLHTVTLPD--SVTAIEERAFTG-TALTQIHIPAKV-TRIGTNAFSECFALSTITSDSE  215 (394)
T ss_dssp             EEECCTT-CCEECTTTTTTCTTCCEEECCT--TCCEECTTTTTT-CCCSEEEECTTC-CEECTTTTTTCTTCCEEEECCS
T ss_pred             cccccce-eeeecccceecccccccccccc--eeeEeccccccc-cceeEEEECCcc-cccccchhhhccccceeccccc
Confidence            9999763 3333446688899999999875  244444455543 578898886543 2234456777888887766554


Q ss_pred             CCchhhHHhhhcCCCCcEEECCCCCCChhHHHHhhcCCCccEEEccCCCCchHHHHHhhCCCCCCEEecCCCCCChHHHH
Q 012186          215 PVTAACLDSLSALGSLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNLDSCGIGDEGLV  294 (469)
Q Consensus       215 ~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~  294 (469)
                      .........+...........           .+.....+..+.+... +.......|..+..|+.+.+.... ......
T Consensus       216 ~~~~~~~~~~~~~~~~~~~~~-----------~~~~~~~~~~~~ip~~-v~~i~~~aF~~c~~L~~i~lp~~~-~~I~~~  282 (394)
T 4gt6_A          216 SYPAIDNVLYEKSANGDYALI-----------RYPSQREDPAFKIPNG-VARIETHAFDSCAYLASVKMPDSV-VSIGTG  282 (394)
T ss_dssp             SSCBSSSCEEEECTTSCEEEE-----------ECCTTCCCSEEECCTT-EEEECTTTTTTCSSCCEEECCTTC-CEECTT
T ss_pred             ccccccceeeccccccccccc-----------ccccccccceEEcCCc-ceEcccceeeecccccEEeccccc-ceecCc
Confidence            322210000111110000000           0011122222322211 111112345555666666665432 122233


Q ss_pred             HhhCCCCCCEEeccCCCCChhhHHHhhCCCCCcEEecccCCCCchHHHhhhCCCCCcEEEccCCCCCHHHHHHHhcCCCC
Q 012186          295 NLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISDGSLRKLAGLSSLKSLNLDARQITDTGLAALTSLTGL  374 (469)
Q Consensus       295 ~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L  374 (469)
                      ++..+++|+.+.+.. .+.......|.+|.+|+.+.+..+ +......+|.+|.+|+.+.+.. .++..+..+|.+|.+|
T Consensus       283 aF~~c~~L~~i~l~~-~i~~I~~~aF~~c~~L~~i~lp~~-v~~I~~~aF~~C~~L~~i~ip~-sv~~I~~~aF~~C~~L  359 (394)
T 4gt6_A          283 AFMNCPALQDIEFSS-RITELPESVFAGCISLKSIDIPEG-ITQILDDAFAGCEQLERIAIPS-SVTKIPESAFSNCTAL  359 (394)
T ss_dssp             TTTTCTTCCEEECCT-TCCEECTTTTTTCTTCCEEECCTT-CCEECTTTTTTCTTCCEEEECT-TCCBCCGGGGTTCTTC
T ss_pred             ccccccccccccCCC-cccccCceeecCCCCcCEEEeCCc-ccEehHhHhhCCCCCCEEEECc-ccCEEhHhHhhCCCCC
Confidence            455666666666643 233334445666666666666543 4444445666677777777753 2444445566677777


Q ss_pred             CEeecCCCCCChhHHHHhHcCCCCCeeeeCCC
Q 012186          375 THLDLFGARITDSGAAYLRNFKNLRSLEICGG  406 (469)
Q Consensus       375 ~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~  406 (469)
                      +.+++.++...   ...+..+..|+.+.+..+
T Consensus       360 ~~i~~~~~~~~---~~~~~~~~~L~~i~i~~~  388 (394)
T 4gt6_A          360 NNIEYSGSRSQ---WNAISTDSGLQNLPVAPG  388 (394)
T ss_dssp             CEEEESSCHHH---HHTCBCCCCC--------
T ss_pred             CEEEECCceee---hhhhhccCCCCEEEeCCC
Confidence            77777665321   234445666666666543

>2ra8_A Uncharacterized protein Q64V53_bacfr; WGR domain, LRR domain, leucine rich repeats, BFR43, structural genomics, PSI-2; 1.95A {Bacteroides fragilis}

Probab=99.17  E-value=1.7e-10  Score=105.33  Aligned_cols=154  Identities=22%  Similarity=0.331  Sum_probs=82.3

Q ss_pred             hhCCCCCCEEeccCCCCChhhHHHhhCCCCCcEEecccCCCCchHHHhhh--CCCCCcEEEccCC--C------CCHHHH
Q 012186          296 LTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISDGSLRKLA--GLSSLKSLNLDAR--Q------ITDTGL  365 (469)
Q Consensus       296 ~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~--~~~~L~~L~l~~~--~------~~~~~~  365 (469)
                      +..+|+|+.|.+.++.-....  .+ ..++|+.|.+..|.+.......+.  .+|+|+.|+|+.+  .      +.... 
T Consensus       168 l~~~P~L~~L~L~g~~~l~l~--~~-~~~~L~~L~L~~~~l~~~~l~~l~~~~lp~L~~L~L~~~~~~~~~~~~~~~l~-  243 (362)
T 2ra8_A          168 LDAMPLLNNLKIKGTNNLSIG--KK-PRPNLKSLEIISGGLPDSVVEDILGSDLPNLEKLVLYVGVEDYGFDGDMNVFR-  243 (362)
T ss_dssp             HHTCTTCCEEEEECCBTCBCC--SC-BCTTCSEEEEECSBCCHHHHHHHHHSBCTTCCEEEEECBCGGGTCCSCGGGTG-
T ss_pred             HhcCCCCcEEEEeCCCCceec--cc-cCCCCcEEEEecCCCChHHHHHHHHccCCCCcEEEEeccccccccchhHHHHH-
Confidence            344555666655554111100  01 245666666666666555444443  4566666665321  1      10000 


Q ss_pred             HHH--hcCCCCCEeecCCCCCChhHHHHhH---cCCCCCeeeeCCCCCCHHHHHHH----hcCCCCCeeeccCCCCCChh
Q 012186          366 AAL--TSLTGLTHLDLFGARITDSGAAYLR---NFKNLRSLEICGGGLTDAGVKHI----KDLSSLTLLNLSQNCNLTDK  436 (469)
Q Consensus       366 ~~l--~~~~~L~~L~l~~~~~~~~~~~~~~---~~~~L~~L~l~~~~~~~~~~~~l----~~~~~L~~L~l~~~~~l~~~  436 (469)
                      ..+  ..+|+|+.|++.+|.+.+..+..+.   .+++|+.|+++.|.+.+.++..+    ..+++|+.|++++| .++..
T Consensus       244 ~~l~~~~~p~Lr~L~L~~~~i~~~~~~~la~a~~~~~L~~LdLs~n~L~d~G~~~L~~~L~~l~~L~~L~L~~n-~i~d~  322 (362)
T 2ra8_A          244 PLFSKDRFPNLKWLGIVDAEEQNVVVEMFLESDILPQLETMDISAGVLTDEGARLLLDHVDKIKHLKFINMKYN-YLSDE  322 (362)
T ss_dssp             GGSCTTTCTTCCEEEEESCTTHHHHHHHHHHCSSGGGCSEEECCSSCCBHHHHHHHHTTHHHHTTCSEEECCSB-BCCHH
T ss_pred             HHHhcCCCCCcCEEeCCCCCCchHHHHHHHhCccCCCCCEEECCCCCCChHHHHHHHhhcccCCcceEEECCCC-cCCHH
Confidence            011  2366777777777766655444443   35677777777777776554433    34577777777777 56666


Q ss_pred             HHHHHHh-CcccccccccCCC
Q 012186          437 TLELISG-LTGLVSLNVSNSR  456 (469)
Q Consensus       437 ~~~~l~~-l~~L~~L~l~~~~  456 (469)
                      ....+.. +  ..++++++++
T Consensus       323 ~~~~l~~al--g~~~~~~~~~  341 (362)
T 2ra8_A          323 MKKELQKSL--PMKIDVSDSQ  341 (362)
T ss_dssp             HHHHHHHHC--CSEEECCSBC
T ss_pred             HHHHHHHHc--CCEEEecCCc
Confidence            6555553 3  2446666655

>3g39_A Variable lymphocyte receptor VLRB.2D; antibody, X-RAY, crystallography, immune system; 1.55A {Petromyzon marinus} PDB: 3g3a_A 3g3b_A 3twi_D

Probab=99.13  E-value=5.1e-12  Score=103.00  Aligned_cols=104  Identities=23%  Similarity=0.213  Sum_probs=86.8

Q ss_pred             CCcEEecccCCCCchHHHhhhCCCCCcEEEccCCCCCHHHHHHHhcCCCCCEeecCCCCCChhHHHHhHcCCCCCeeeeC
Q 012186          325 NLESINLSFTGISDGSLRKLAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLFGARITDSGAAYLRNFKNLRSLEIC  404 (469)
Q Consensus       325 ~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~  404 (469)
                      ..+.++++++.+.... ..+  .++|+.|++++|.++...+..+..+++|++|++++|++++..+..+..+++|+.|+++
T Consensus        10 ~~~~l~~s~n~l~~ip-~~~--~~~l~~L~L~~N~i~~~~~~~~~~l~~L~~L~Ls~N~l~~l~~~~f~~l~~L~~L~L~   86 (170)
T 3g39_A           10 SGTTVDCSGKSLASVP-TGI--PTTTQVLYLYDNQITKLEPGVFDRLTQLTRLDLDNNQLTVLPAGVFDKLTQLTQLSLN   86 (170)
T ss_dssp             ETTEEECTTSCCSSCC-SCC--CTTCSEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECC
T ss_pred             CCCEEEeCCCCcCccC-ccC--CCCCcEEEcCCCcCCccChhhhcCcccCCEEECCCCCcCccChhhccCCCCCCEEECC
Confidence            3578888888776643 222  3789999999999998877778889999999999999998877778889999999999


Q ss_pred             CCCCCHHHHHHHhcCCCCCeeeccCCC
Q 012186          405 GGGLTDAGVKHIKDLSSLTLLNLSQNC  431 (469)
Q Consensus       405 ~~~~~~~~~~~l~~~~~L~~L~l~~~~  431 (469)
                      +|+++...+..|..+++|++|++++|+
T Consensus        87 ~N~l~~~~~~~~~~l~~L~~L~L~~N~  113 (170)
T 3g39_A           87 DNQLKSIPRGAFDNLKSLTHIWLLNNP  113 (170)
T ss_dssp             SSCCCCCCTTTTTTCTTCCEEECCSSC
T ss_pred             CCccCEeCHHHhcCCCCCCEEEeCCCC
Confidence            999988877678889999999999994

>2r9u_A Variable lymphocyte receptor; adaptive immunity, VLR, leucine-rich repeat, LRR, system; 2.10A {Petromyzon marinus}

Probab=99.08  E-value=1.2e-11  Score=101.18  Aligned_cols=102  Identities=19%  Similarity=0.215  Sum_probs=82.8

Q ss_pred             cEEecccCCCCchHHHhhhCCCCCcEEEccCCCCCHHHHHHHhcCCCCCEeecCCCCCChhHHHHhHcCCCCCeeeeCCC
Q 012186          327 ESINLSFTGISDGSLRKLAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLFGARITDSGAAYLRNFKNLRSLEICGG  406 (469)
Q Consensus       327 ~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~  406 (469)
                      +.++++++.+.... ..+.  ++|+.|++++|.++...+..+..+++|++|++++|++++..+..+..+++|+.|++++|
T Consensus        15 ~~l~~~~n~l~~iP-~~~~--~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~i~~~~~~~l~~L~~L~L~~N   91 (174)
T 2r9u_A           15 TLVNCQNIRLASVP-AGIP--TDKQRLWLNNNQITKLEPGVFDHLVNLQQLYFNSNKLTAIPTGVFDKLTQLTQLDLNDN   91 (174)
T ss_dssp             SEEECCSSCCSSCC-SCCC--TTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSS
T ss_pred             cEEEeCCCCCCccC-CCcC--CCCcEEEeCCCCccccCHHHhcCCcCCCEEECCCCCCCccChhHhCCcchhhEEECCCC
Confidence            67888888775532 2232  78999999999998877777888899999999999998876666788899999999999


Q ss_pred             CCCHHHHHHHhcCCCCCeeeccCCC
Q 012186          407 GLTDAGVKHIKDLSSLTLLNLSQNC  431 (469)
Q Consensus       407 ~~~~~~~~~l~~~~~L~~L~l~~~~  431 (469)
                      +++...+..|..+++|++|++++|+
T Consensus        92 ~l~~l~~~~~~~l~~L~~L~L~~N~  116 (174)
T 2r9u_A           92 HLKSIPRGAFDNLKSLTHIYLYNNP  116 (174)
T ss_dssp             CCCCCCTTTTTTCTTCSEEECCSSC
T ss_pred             ccceeCHHHhccccCCCEEEeCCCC
Confidence            9888766667888999999999984

>1io0_A Tropomodulin; LRR protein, right-handed super-helix, protein binding; 1.45A {Gallus gallus} SCOP: c.10.1.1

Probab=99.07  E-value=2e-09  Score=88.73  Aligned_cols=118  Identities=19%  Similarity=0.227  Sum_probs=71.4

Q ss_pred             hhhCCCCCcEEEccCC-CCCHHHHH----HHhcCCCCCEeecCCCCCChhHH----HHhHcCCCCCeeeeCCCCCCHHHH
Q 012186          343 KLAGLSSLKSLNLDAR-QITDTGLA----ALTSLTGLTHLDLFGARITDSGA----AYLRNFKNLRSLEICGGGLTDAGV  413 (469)
Q Consensus       343 ~~~~~~~L~~L~l~~~-~~~~~~~~----~l~~~~~L~~L~l~~~~~~~~~~----~~~~~~~~L~~L~l~~~~~~~~~~  413 (469)
                      .+...+.|++|++++| .+...+..    .+...++|++|++++|.+.+...    ..+...++|+.|++++|.+.+.+.
T Consensus        31 ~l~~~~~L~~L~L~~n~~i~~~g~~~l~~~L~~~~~L~~L~Ls~n~i~~~g~~~l~~~L~~n~~L~~L~L~~N~i~~~g~  110 (185)
T 1io0_A           31 IQNNDPDLEEVNLNNIMNIPVPTLKACAEALKTNTYVKKFSIVGTRSNDPVAFALAEMLKVNNTLKSLNVESNFISGSGI  110 (185)
T ss_dssp             HHTTCTTCCEEECTTCTTCCHHHHHHHHHHHTTCCSCCEEECTTSCCCHHHHHHHHHHHHHCSSCCEEECCSSCCCHHHH
T ss_pred             HHhcCCCCCEEEecCCCCCCHHHHHHHHHHHHhCCCcCEEECcCCCCChHHHHHHHHHHHhCCCcCEEECcCCcCCHHHH
Confidence            3344555555555555 55544332    23345666666666666665443    334455677777777777776543


Q ss_pred             H----HHhcCCCCCeeec--cCCCCCChhHHH----HHHhCcccccccccCCCCCHHH
Q 012186          414 K----HIKDLSSLTLLNL--SQNCNLTDKTLE----LISGLTGLVSLNVSNSRITSAG  461 (469)
Q Consensus       414 ~----~l~~~~~L~~L~l--~~~~~l~~~~~~----~l~~l~~L~~L~l~~~~~~~~~  461 (469)
                      .    .+...++|++|++  ++| .++.....    .+...++|++|++++|++.+.|
T Consensus       111 ~~l~~~L~~n~~L~~L~L~~~~N-~i~~~g~~~l~~~L~~n~~L~~L~L~~n~i~~~~  167 (185)
T 1io0_A          111 LALVEALQSNTSLIELRIDNQSQ-PLGNNVEMEIANMLEKNTTLLKFGYHFTQQGPRL  167 (185)
T ss_dssp             HHHHHGGGGCSSCCEEECCCCSS-CCCHHHHHHHHHHHHHCSSCCEEECCCSSHHHHH
T ss_pred             HHHHHHHHhCCCceEEEecCCCC-CCCHHHHHHHHHHHHhCCCcCEEeccCCCCChHH
Confidence            3    3345667888888  667 66665443    3445578888888888887776

>3e4g_A ATP synthase subunit S, mitochondrial; leucine-rich repeat, CF0, hydrogen ION transport, inner membrane, ION transport, membrane, mitochondrion; 0.96A {Bos taurus} PDB: 3e3z_A 3dze_A 3e2j_A

Probab=99.06  E-value=3.6e-10  Score=90.40  Aligned_cols=90  Identities=21%  Similarity=0.320  Sum_probs=72.7

Q ss_pred             CCccEEEecCCCCChHhhHhhhcCCCCCEEecCCCcccChhHhHhhhCC----CCCCEEeCCCCCcCcHHHHHHHhCCCC
Q 012186           57 SSLLSVDLSGSDVTDSGLIHLKDCSNLQSLDFNFCIQISDGGLEHLRGL----SNLTSLSFRRNNAITAQGMKAFAGLIN  132 (469)
Q Consensus        57 ~~l~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~l~~~----~~L~~L~l~~~~~~~~~~~~~~~~l~~  132 (469)
                      -.+++|+++++.+++.....+..|++|+.|++++|..+++.....+..+    ++|++|++++|..+++.....+.++++
T Consensus        61 ~~L~~LDLs~~~Itd~GL~~L~~~~~L~~L~L~~C~~ItD~gL~~L~~~~~~~~~L~~L~Ls~C~~ITD~Gl~~L~~~~~  140 (176)
T 3e4g_A           61 YKIQAIDATDSCIMSIGFDHMEGLQYVEKIRLCKCHYIEDGCLERLSQLENLQKSMLEMEIISCGNVTDKGIIALHHFRN  140 (176)
T ss_dssp             CCEEEEEEESCCCCGGGGGGGTTCSCCCEEEEESCTTCCHHHHHHHHTCHHHHHHCCEEEEESCTTCCHHHHHHGGGCTT
T ss_pred             ceEeEEeCcCCCccHHHHHHhcCCCCCCEEEeCCCCccCHHHHHHHHhcccccCCCCEEEcCCCCcCCHHHHHHHhcCCC
Confidence            3688888888888888777888888888888888888888888888775    478888888887777777777888888


Q ss_pred             CCEEeccccccccc
Q 012186          133 LVKLDLERCTRIHG  146 (469)
Q Consensus       133 L~~L~l~~~~~~~~  146 (469)
                      |++|++++|+.+..
T Consensus       141 L~~L~L~~c~~Itd  154 (176)
T 3e4g_A          141 LKYLFLSDLPGVKE  154 (176)
T ss_dssp             CCEEEEESCTTCCC
T ss_pred             CCEEECCCCCCCCc
Confidence            88888888765554

>3g39_A Variable lymphocyte receptor VLRB.2D; antibody, X-RAY, crystallography, immune system; 1.55A {Petromyzon marinus} PDB: 3g3a_A 3g3b_A 3twi_D

Probab=99.01  E-value=6.6e-11  Score=96.33  Aligned_cols=106  Identities=20%  Similarity=0.168  Sum_probs=90.9

Q ss_pred             CCCEEeccCCCCChhhHHHhhCCCCCcEEecccCCCCchHHHhhhCCCCCcEEEccCCCCCHHHHHHHhcCCCCCEeecC
Q 012186          301 NLKCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISDGSLRKLAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLF  380 (469)
Q Consensus       301 ~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~  380 (469)
                      ..+.++++++.+.... ..  -.++|+.|++++|.+....+..+..+++|+.|++++|.++......+..+++|++|+++
T Consensus        10 ~~~~l~~s~n~l~~ip-~~--~~~~l~~L~L~~N~i~~~~~~~~~~l~~L~~L~Ls~N~l~~l~~~~f~~l~~L~~L~L~   86 (170)
T 3g39_A           10 SGTTVDCSGKSLASVP-TG--IPTTTQVLYLYDNQITKLEPGVFDRLTQLTRLDLDNNQLTVLPAGVFDKLTQLTQLSLN   86 (170)
T ss_dssp             ETTEEECTTSCCSSCC-SC--CCTTCSEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECC
T ss_pred             CCCEEEeCCCCcCccC-cc--CCCCCcEEEcCCCcCCccChhhhcCcccCCEEECCCCCcCccChhhccCCCCCCEEECC
Confidence            4578999988777643 22  24889999999999988878888899999999999999998777778899999999999


Q ss_pred             CCCCChhHHHHhHcCCCCCeeeeCCCCCC
Q 012186          381 GARITDSGAAYLRNFKNLRSLEICGGGLT  409 (469)
Q Consensus       381 ~~~~~~~~~~~~~~~~~L~~L~l~~~~~~  409 (469)
                      +|++++..+..+..+++|+.|++++|.++
T Consensus        87 ~N~l~~~~~~~~~~l~~L~~L~L~~N~~~  115 (170)
T 3g39_A           87 DNQLKSIPRGAFDNLKSLTHIWLLNNPWD  115 (170)
T ss_dssp             SSCCCCCCTTTTTTCTTCCEEECCSSCBC
T ss_pred             CCccCEeCHHHhcCCCCCCEEEeCCCCCC
Confidence            99999887777889999999999999875

>3e4g_A ATP synthase subunit S, mitochondrial; leucine-rich repeat, CF0, hydrogen ION transport, inner membrane, ION transport, membrane, mitochondrion; 0.96A {Bos taurus} PDB: 3e3z_A 3dze_A 3e2j_A

Probab=99.00  E-value=8.7e-10  Score=88.18  Aligned_cols=100  Identities=21%  Similarity=0.333  Sum_probs=60.8

Q ss_pred             CCcEEEccCCCCCHHHHHHHhcCCCCCEeecCCC-CCChhHHHHhHcC----CCCCeeeeCCCC-CCHHHHHHHhcCCCC
Q 012186          349 SLKSLNLDARQITDTGLAALTSLTGLTHLDLFGA-RITDSGAAYLRNF----KNLRSLEICGGG-LTDAGVKHIKDLSSL  422 (469)
Q Consensus       349 ~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~-~~~~~~~~~~~~~----~~L~~L~l~~~~-~~~~~~~~l~~~~~L  422 (469)
                      .|+.|++++|.++..+...+..|++|++|++++| .+++.....+..+    ++|+.|++++|. +++.+...+..+++|
T Consensus        62 ~L~~LDLs~~~Itd~GL~~L~~~~~L~~L~L~~C~~ItD~gL~~L~~~~~~~~~L~~L~Ls~C~~ITD~Gl~~L~~~~~L  141 (176)
T 3e4g_A           62 KIQAIDATDSCIMSIGFDHMEGLQYVEKIRLCKCHYIEDGCLERLSQLENLQKSMLEMEIISCGNVTDKGIIALHHFRNL  141 (176)
T ss_dssp             CEEEEEEESCCCCGGGGGGGTTCSCCCEEEEESCTTCCHHHHHHHHTCHHHHHHCCEEEEESCTTCCHHHHHHGGGCTTC
T ss_pred             eEeEEeCcCCCccHHHHHHhcCCCCCCEEEeCCCCccCHHHHHHHHhcccccCCCCEEEcCCCCcCCHHHHHHHhcCCCC
Confidence            4555555555555555555555666666666665 3555555555442    467777777763 777777777777888


Q ss_pred             CeeeccCCCCCChhHH--HHH-HhCcccc
Q 012186          423 TLLNLSQNCNLTDKTL--ELI-SGLTGLV  448 (469)
Q Consensus       423 ~~L~l~~~~~l~~~~~--~~l-~~l~~L~  448 (469)
                      ++|++++|+.+++...  ..+ ..+|+++
T Consensus       142 ~~L~L~~c~~Itd~gl~~~~L~~~lP~l~  170 (176)
T 3e4g_A          142 KYLFLSDLPGVKEKEKIVQAFKTSLPSLE  170 (176)
T ss_dssp             CEEEEESCTTCCCHHHHHHHHHHHCTTCE
T ss_pred             CEEECCCCCCCCchHHHHHHHHHHCCCcE
Confidence            8888888877776432  222 2456543

>4h09_A Hypothetical leucine rich repeat protein; two LRR_5 domains, PF13306 family, structural genomics, JOIN for structural genomics, JCSG; 2.50A {Eubacterium ventriosum}

Probab=98.95  E-value=7.3e-10  Score=103.12  Aligned_cols=106  Identities=19%  Similarity=0.208  Sum_probs=47.3

Q ss_pred             hhCCCCCCEEeccCCCCChhhHHHhhCCCCCcEEecccCCCCchHHHhhhCCCCCcEEEccCCCCCHHHHHHHhcCCCCC
Q 012186          296 LTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISDGSLRKLAGLSSLKSLNLDARQITDTGLAALTSLTGLT  375 (469)
Q Consensus       296 ~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~  375 (469)
                      +..+..|+.+.+..+ +.......+..+.+|+.+.+... +......++..|++|+.+.+.++.++.....+|.+|.+|+
T Consensus       236 f~~~~~L~~i~lp~~-v~~I~~~aF~~~~~l~~i~l~~~-i~~i~~~aF~~c~~L~~i~l~~~~i~~I~~~aF~~c~~L~  313 (379)
T 4h09_A          236 FYGMKALDEIAIPKN-VTSIGSFLLQNCTALKTLNFYAK-VKTVPYLLCSGCSNLTKVVMDNSAIETLEPRVFMDCVKLS  313 (379)
T ss_dssp             TTTCSSCCEEEECTT-CCEECTTTTTTCTTCCEEEECCC-CSEECTTTTTTCTTCCEEEECCTTCCEECTTTTTTCTTCC
T ss_pred             ccCCccceEEEcCCC-ccEeCccccceeehhcccccccc-ceeccccccccccccccccccccccceehhhhhcCCCCCC
Confidence            344444555544332 22222333444445555544322 2222333444455555555554444444444455555555


Q ss_pred             EeecCCCCCChhHHHHhHcCCCCCeeeeC
Q 012186          376 HLDLFGARITDSGAAYLRNFKNLRSLEIC  404 (469)
Q Consensus       376 ~L~l~~~~~~~~~~~~~~~~~~L~~L~l~  404 (469)
                      .+.+..+ ++.+...+|.+|.+|+.+.+.
T Consensus       314 ~i~lp~~-l~~I~~~aF~~C~~L~~i~ip  341 (379)
T 4h09_A          314 SVTLPTA-LKTIQVYAFKNCKALSTISYP  341 (379)
T ss_dssp             EEECCTT-CCEECTTTTTTCTTCCCCCCC
T ss_pred             EEEcCcc-ccEEHHHHhhCCCCCCEEEEC
Confidence            5555432 333334444555555555554

>2r9u_A Variable lymphocyte receptor; adaptive immunity, VLR, leucine-rich repeat, LRR, system; 2.10A {Petromyzon marinus}

Probab=98.95  E-value=2.9e-10  Score=92.85  Aligned_cols=86  Identities=20%  Similarity=0.243  Sum_probs=50.7

Q ss_pred             CCCcEEecccCCCCchHHHhhhCCCCCcEEEccCCCCCHHHHHHHhcCCCCCEeecCCCCCChhHHHHhHcCCCCCeeee
Q 012186          324 TNLESINLSFTGISDGSLRKLAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLFGARITDSGAAYLRNFKNLRSLEI  403 (469)
Q Consensus       324 ~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l  403 (469)
                      ++|+.|++++|.+....+..+..+++|+.|++++|+++......+..+++|+.|++++|.+++..+..+..+++|+.|++
T Consensus        33 ~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~i~~~~~~~l~~L~~L~L~~N~l~~l~~~~~~~l~~L~~L~L  112 (174)
T 2r9u_A           33 TDKQRLWLNNNQITKLEPGVFDHLVNLQQLYFNSNKLTAIPTGVFDKLTQLTQLDLNDNHLKSIPRGAFDNLKSLTHIYL  112 (174)
T ss_dssp             TTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCSEEEC
T ss_pred             CCCcEEEeCCCCccccCHHHhcCCcCCCEEECCCCCCCccChhHhCCcchhhEEECCCCccceeCHHHhccccCCCEEEe
Confidence            45555555555555554455555666666666666665544444555666666666666666554445566666666666


Q ss_pred             CCCCCC
Q 012186          404 CGGGLT  409 (469)
Q Consensus       404 ~~~~~~  409 (469)
                      ++|.+.
T Consensus       113 ~~N~~~  118 (174)
T 2r9u_A          113 YNNPWD  118 (174)
T ss_dssp             CSSCBC
T ss_pred             CCCCcc
Confidence            666554

>4h09_A Hypothetical leucine rich repeat protein; two LRR_5 domains, PF13306 family, structural genomics, JOIN for structural genomics, JCSG; 2.50A {Eubacterium ventriosum}

Probab=98.92  E-value=2.5e-09  Score=99.48  Aligned_cols=146  Identities=18%  Similarity=0.162  Sum_probs=93.3

Q ss_pred             HhhcCCCccEEEccCCCCchHHHHHhhCCCCCCEEecCCCCCChHHHHHhhCCCCCCEEeccCCCCChhhHHHhhCCCCC
Q 012186          247 KFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNLDSCGIGDEGLVNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNL  326 (469)
Q Consensus       247 ~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L  326 (469)
                      .+..+.+|+.+.+..+ +.......+..+..|+.+.+..+ +......++..+.+|+.+.+... +.......+..|++|
T Consensus       212 ~f~~~~~l~~i~~~~~-~~~i~~~~f~~~~~L~~i~lp~~-v~~I~~~aF~~~~~l~~i~l~~~-i~~i~~~aF~~c~~L  288 (379)
T 4h09_A          212 GFSYGKNLKKITITSG-VTTLGDGAFYGMKALDEIAIPKN-VTSIGSFLLQNCTALKTLNFYAK-VKTVPYLLCSGCSNL  288 (379)
T ss_dssp             TTTTCSSCSEEECCTT-CCEECTTTTTTCSSCCEEEECTT-CCEECTTTTTTCTTCCEEEECCC-CSEECTTTTTTCTTC
T ss_pred             ccccccccceeeeccc-eeEEccccccCCccceEEEcCCC-ccEeCccccceeehhcccccccc-ceecccccccccccc
Confidence            3445566666666543 22222344566777777777654 33344445667777887777543 444444566778888


Q ss_pred             cEEecccCCCCchHHHhhhCCCCCcEEEccCCCCCHHHHHHHhcCCCCCEeecCCCCCChhHHHHhHcCCC
Q 012186          327 ESINLSFTGISDGSLRKLAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLFGARITDSGAAYLRNFKN  397 (469)
Q Consensus       327 ~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~  397 (469)
                      +.+.+..+.+......+|.+|.+|+.+.+.. .++.....+|.+|.+|+.+.+..+ ++.+...+|.+++.
T Consensus       289 ~~i~l~~~~i~~I~~~aF~~c~~L~~i~lp~-~l~~I~~~aF~~C~~L~~i~ip~~-v~~I~~~aF~~c~~  357 (379)
T 4h09_A          289 TKVVMDNSAIETLEPRVFMDCVKLSSVTLPT-ALKTIQVYAFKNCKALSTISYPKS-ITLIESGAFEGSSI  357 (379)
T ss_dssp             CEEEECCTTCCEECTTTTTTCTTCCEEECCT-TCCEECTTTTTTCTTCCCCCCCTT-CCEECTTTTTTSSC
T ss_pred             ccccccccccceehhhhhcCCCCCCEEEcCc-cccEEHHHHhhCCCCCCEEEECCc-cCEEchhHhhCCCC
Confidence            8888877777666667777888888888864 355555667778888888888653 55555556655543

>1io0_A Tropomodulin; LRR protein, right-handed super-helix, protein binding; 1.45A {Gallus gallus} SCOP: c.10.1.1

Probab=98.90  E-value=1.5e-08  Score=83.37  Aligned_cols=114  Identities=18%  Similarity=0.166  Sum_probs=66.7

Q ss_pred             hCCCCCcEEecccC-CCCchHHH----hhhCCCCCcEEEccCCCCCHHHHH----HHhcCCCCCEeecCCCCCChhH---
Q 012186          321 SGLTNLESINLSFT-GISDGSLR----KLAGLSSLKSLNLDARQITDTGLA----ALTSLTGLTHLDLFGARITDSG---  388 (469)
Q Consensus       321 ~~~~~L~~L~l~~~-~~~~~~~~----~~~~~~~L~~L~l~~~~~~~~~~~----~l~~~~~L~~L~l~~~~~~~~~---  388 (469)
                      ...+.|++|++++| .+.+....    .+...++|++|++++|.+...+..    .+...++|++|++++|.+.+..   
T Consensus        33 ~~~~~L~~L~L~~n~~i~~~g~~~l~~~L~~~~~L~~L~Ls~n~i~~~g~~~l~~~L~~n~~L~~L~L~~N~i~~~g~~~  112 (185)
T 1io0_A           33 NNDPDLEEVNLNNIMNIPVPTLKACAEALKTNTYVKKFSIVGTRSNDPVAFALAEMLKVNNTLKSLNVESNFISGSGILA  112 (185)
T ss_dssp             TTCTTCCEEECTTCTTCCHHHHHHHHHHHTTCCSCCEEECTTSCCCHHHHHHHHHHHHHCSSCCEEECCSSCCCHHHHHH
T ss_pred             hcCCCCCEEEecCCCCCCHHHHHHHHHHHHhCCCcCEEECcCCCCChHHHHHHHHHHHhCCCcCEEECcCCcCCHHHHHH
Confidence            34444555555554 44443322    223345666666666666554432    2334566777777777776654   


Q ss_pred             -HHHhHcCCCCCeeee--CCCCCCHHHHHH----HhcCCCCCeeeccCCCCCCh
Q 012186          389 -AAYLRNFKNLRSLEI--CGGGLTDAGVKH----IKDLSSLTLLNLSQNCNLTD  435 (469)
Q Consensus       389 -~~~~~~~~~L~~L~l--~~~~~~~~~~~~----l~~~~~L~~L~l~~~~~l~~  435 (469)
                       ...+...++|+.|++  ++|.+.+.+...    +...++|++|++++| .+..
T Consensus       113 l~~~L~~n~~L~~L~L~~~~N~i~~~g~~~l~~~L~~n~~L~~L~L~~n-~i~~  165 (185)
T 1io0_A          113 LVEALQSNTSLIELRIDNQSQPLGNNVEMEIANMLEKNTTLLKFGYHFT-QQGP  165 (185)
T ss_dssp             HHHGGGGCSSCCEEECCCCSSCCCHHHHHHHHHHHHHCSSCCEEECCCS-SHHH
T ss_pred             HHHHHHhCCCceEEEecCCCCCCCHHHHHHHHHHHHhCCCcCEEeccCC-CCCh
Confidence             334456677888888  677777665433    345678888888888 4443

>2ifg_A High affinity nerve growth factor receptor; TRK, TRKA, receptor-ligand complex transferase; HET: NAG NDG MAN BMA; 3.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 c.10.2.7

Probab=98.82  E-value=7.2e-10  Score=101.84  Aligned_cols=101  Identities=20%  Similarity=0.230  Sum_probs=83.6

Q ss_pred             EEecccC-CCCchHHHhhhCCCCCcEEEccC-CCCCHHHHHHHhcCCCCCEeecCCCCCChhHHHHhHcCCCCCeeeeCC
Q 012186          328 SINLSFT-GISDGSLRKLAGLSSLKSLNLDA-RQITDTGLAALTSLTGLTHLDLFGARITDSGAAYLRNFKNLRSLEICG  405 (469)
Q Consensus       328 ~L~l~~~-~~~~~~~~~~~~~~~L~~L~l~~-~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~  405 (469)
                      .++.+++ .+... |. ++.+++|+.|+|++ |.++...+..+..+++|+.|+|++|.+++..+..|..+++|+.|+|++
T Consensus        12 ~v~~~~~n~l~~i-p~-l~~~~~L~~L~l~~~n~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~l~~   89 (347)
T 2ifg_A           12 GLRCTRDGALDSL-HH-LPGAENLTELYIENQQHLQHLELRDLRGLGELRNLTIVKSGLRFVAPDAFHFTPRLSRLNLSF   89 (347)
T ss_dssp             CEECCSSCCCTTT-TT-SCSCSCCSEEECCSCSSCCEECGGGSCSCCCCSEEECCSSCCCEECTTGGGSCSCCCEEECCS
T ss_pred             EEEcCCCCCCCcc-CC-CCCCCCeeEEEccCCCCCCCcChhHhccccCCCEEECCCCccceeCHHHhcCCcCCCEEeCCC
Confidence            4566666 67663 44 88888999999996 999988777888999999999999999998888889999999999999


Q ss_pred             CCCCHHHHHHHhcCCCCCeeeccCCC
Q 012186          406 GGLTDAGVKHIKDLSSLTLLNLSQNC  431 (469)
Q Consensus       406 ~~~~~~~~~~l~~~~~L~~L~l~~~~  431 (469)
                      |+++...+..+..++ |+.|++.+|+
T Consensus        90 N~l~~~~~~~~~~~~-L~~l~l~~N~  114 (347)
T 2ifg_A           90 NALESLSWKTVQGLS-LQELVLSGNP  114 (347)
T ss_dssp             SCCSCCCSTTTCSCC-CCEEECCSSC
T ss_pred             CccceeCHHHcccCC-ceEEEeeCCC
Confidence            999887655555554 9999999994

>2ifg_A High affinity nerve growth factor receptor; TRK, TRKA, receptor-ligand complex transferase; HET: NAG NDG MAN BMA; 3.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 c.10.2.7

Probab=98.77  E-value=2.5e-09  Score=98.23  Aligned_cols=104  Identities=20%  Similarity=0.249  Sum_probs=89.3

Q ss_pred             CEEeccCC-CCChhhHHHhhCCCCCcEEeccc-CCCCchHHHhhhCCCCCcEEEccCCCCCHHHHHHHhcCCCCCEeecC
Q 012186          303 KCLELSDT-QVGSSGLRHLSGLTNLESINLSF-TGISDGSLRKLAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLF  380 (469)
Q Consensus       303 ~~L~l~~~-~~~~~~~~~~~~~~~L~~L~l~~-~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~  380 (469)
                      ..+++.++ .+... +. +..+++|+.|++++ |.+....+..+..+++|+.|+|++|.++...+..|..+++|+.|+|+
T Consensus        11 ~~v~~~~~n~l~~i-p~-l~~~~~L~~L~l~~~n~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~l~   88 (347)
T 2ifg_A           11 SGLRCTRDGALDSL-HH-LPGAENLTELYIENQQHLQHLELRDLRGLGELRNLTIVKSGLRFVAPDAFHFTPRLSRLNLS   88 (347)
T ss_dssp             SCEECCSSCCCTTT-TT-SCSCSCCSEEECCSCSSCCEECGGGSCSCCCCSEEECCSSCCCEECTTGGGSCSCCCEEECC
T ss_pred             CEEEcCCCCCCCcc-CC-CCCCCCeeEEEccCCCCCCCcChhHhccccCCCEEECCCCccceeCHHHhcCCcCCCEEeCC
Confidence            45677777 67664 44 88899999999996 99998888889999999999999999999888888999999999999


Q ss_pred             CCCCChhHHHHhHcCCCCCeeeeCCCCCC
Q 012186          381 GARITDSGAAYLRNFKNLRSLEICGGGLT  409 (469)
Q Consensus       381 ~~~~~~~~~~~~~~~~~L~~L~l~~~~~~  409 (469)
                      +|++++..+..+..++ |+.|++.+|.+.
T Consensus        89 ~N~l~~~~~~~~~~~~-L~~l~l~~N~~~  116 (347)
T 2ifg_A           89 FNALESLSWKTVQGLS-LQELVLSGNPLH  116 (347)
T ss_dssp             SSCCSCCCSTTTCSCC-CCEEECCSSCCC
T ss_pred             CCccceeCHHHcccCC-ceEEEeeCCCcc
Confidence            9999987666666555 999999999876

>3rw6_A Nuclear RNA export factor 1; retroviral constitutive transport element (CTE), RNA recogni motif (RRM); HET: GTP CCC; 2.30A {Homo sapiens} PDB: 3rw7_A 1koo_A 1koh_A 1ft8_A 1fo1_A

Probab=98.18  E-value=8.8e-07  Score=76.53  Aligned_cols=80  Identities=21%  Similarity=0.343  Sum_probs=49.9

Q ss_pred             hcCCCCCEeecCCCCCCh--hHHHHhHcCCCCCeeeeCCCCCCHHHHHHHhcCC--CCCeeeccCCCCCChh-------H
Q 012186          369 TSLTGLTHLDLFGARITD--SGAAYLRNFKNLRSLEICGGGLTDAGVKHIKDLS--SLTLLNLSQNCNLTDK-------T  437 (469)
Q Consensus       369 ~~~~~L~~L~l~~~~~~~--~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~--~L~~L~l~~~~~l~~~-------~  437 (469)
                      .++++|+.|++++|.+++  .++..+..+++|+.|++++|.+.+.  ..+..+.  +|++|++++|+ +...       .
T Consensus       167 ~~l~~L~~L~Ls~N~l~~l~~l~~~~~~l~~L~~L~Ls~N~i~~~--~~l~~l~~l~L~~L~L~~Np-l~~~~~~~~~y~  243 (267)
T 3rw6_A          167 ENIPELLSLNLSNNRLYRLDDMSSIVQKAPNLKILNLSGNELKSE--RELDKIKGLKLEELWLDGNS-LCDTFRDQSTYI  243 (267)
T ss_dssp             HHCTTCCEEECTTSCCCCCGGGTTHHHHSTTCCEEECTTSCCCSG--GGGGGGTTSCCSEEECTTST-TGGGCSSHHHHH
T ss_pred             hhCCCCCEEECCCCCCCCCccchhHHhhCCCCCEEECCCCccCCc--hhhhhcccCCcceEEccCCc-CccccCcchhHH
Confidence            356777777777777766  3345556677777777777777664  2233333  77778887774 4321       2


Q ss_pred             HHHHHhCccccccc
Q 012186          438 LELISGLTGLVSLN  451 (469)
Q Consensus       438 ~~~l~~l~~L~~L~  451 (469)
                      ...+..+|+|+.||
T Consensus       244 ~~il~~~P~L~~LD  257 (267)
T 3rw6_A          244 SAIRERFPKLLRLD  257 (267)
T ss_dssp             HHHHHHCTTCCEES
T ss_pred             HHHHHHCcccCeEC
Confidence            23456777777765

>1pgv_A TMD-1, tropomodulin TMD-1; structural genomics, PSI, protein structure initiative, southeast collaboratory for structural genomics secsg; 1.80A {Caenorhabditis elegans} SCOP: c.10.1.1

Probab=98.08  E-value=7.7e-05  Score=60.79  Aligned_cols=88  Identities=17%  Similarity=0.187  Sum_probs=40.7

Q ss_pred             CCCCCEeecCCCCCChhHH----HHhHcCCCCCeeeeCCCCCCHHHHHHH----hcCCCCCeeeccCCC--CCChh----
Q 012186          371 LTGLTHLDLFGARITDSGA----AYLRNFKNLRSLEICGGGLTDAGVKHI----KDLSSLTLLNLSQNC--NLTDK----  436 (469)
Q Consensus       371 ~~~L~~L~l~~~~~~~~~~----~~~~~~~~L~~L~l~~~~~~~~~~~~l----~~~~~L~~L~l~~~~--~l~~~----  436 (469)
                      -..|++|++++|.+.+...    ..+..-++|+.|++++|.|.+.+...+    ..-+.|++|++++|.  .+...    
T Consensus        69 N~~L~~L~L~~n~igd~ga~alA~aL~~N~tL~~L~L~~N~Ig~~Ga~ala~aL~~N~tL~~L~L~n~~~~~ig~~g~~~  148 (197)
T 1pgv_A           69 SKHIEKFSLANTAISDSEARGLIELIETSPSLRVLNVESNFLTPELLARLLRSTLVTQSIVEFKADNQRQSVLGNQVEMD  148 (197)
T ss_dssp             CSCCCEEECTTSCCBHHHHTTHHHHHHHCSSCCEEECCSSBCCHHHHHHHHHHTTTTCCCSEEECCCCSSCCCCHHHHHH
T ss_pred             CCCcCEEEccCCCCChHHHHHHHHHHhcCCccCeEecCCCcCCHHHHHHHHHHHhhCCceeEEECCCCcCcCcCHHHHHH
Confidence            3445555555555544332    223344555555555555555443333    223446666665432  23332    


Q ss_pred             HHHHHHhCcccccccccCCCCC
Q 012186          437 TLELISGLTGLVSLNVSNSRIT  458 (469)
Q Consensus       437 ~~~~l~~l~~L~~L~l~~~~~~  458 (469)
                      +.+.+..-+.|+.|+++.+...
T Consensus       149 ia~aL~~N~tL~~L~l~~~~~g  170 (197)
T 1pgv_A          149 MMMAIEENESLLRVGISFASME  170 (197)
T ss_dssp             HHHHHHHCSSCCEEECCCCCHH
T ss_pred             HHHHHHhCCCcCeEeccCCCcc
Confidence            2233344455666666544433

>3rw6_A Nuclear RNA export factor 1; retroviral constitutive transport element (CTE), RNA recogni motif (RRM); HET: GTP CCC; 2.30A {Homo sapiens} PDB: 3rw7_A 1koo_A 1koh_A 1ft8_A 1fo1_A

Probab=97.96  E-value=3.4e-05  Score=66.59  Aligned_cols=85  Identities=21%  Similarity=0.250  Sum_probs=56.3

Q ss_pred             HHhcCCCccEEEecCCCCCh--HhhHhhhcCCCCCEEecCCCcccChh-HhHhhhCCCCCCEEeCCCCCcCc------HH
Q 012186           52 IASQGSSLLSVDLSGSDVTD--SGLIHLKDCSNLQSLDFNFCIQISDG-GLEHLRGLSNLTSLSFRRNNAIT------AQ  122 (469)
Q Consensus        52 ~~~~~~~l~~L~l~~~~~~~--~~~~~~~~~~~L~~L~l~~~~~~~~~-~~~~l~~~~~L~~L~l~~~~~~~------~~  122 (469)
                      +....+++++|+|++|.+++  .++..+..+++|+.|+|++| .++.. ....+..+ +|++|++++|.+..      ..
T Consensus       165 ~~~~l~~L~~L~Ls~N~l~~l~~l~~~~~~l~~L~~L~Ls~N-~i~~~~~l~~l~~l-~L~~L~L~~Npl~~~~~~~~~y  242 (267)
T 3rw6_A          165 IEENIPELLSLNLSNNRLYRLDDMSSIVQKAPNLKILNLSGN-ELKSERELDKIKGL-KLEELWLDGNSLCDTFRDQSTY  242 (267)
T ss_dssp             HHHHCTTCCEEECTTSCCCCCGGGTTHHHHSTTCCEEECTTS-CCCSGGGGGGGTTS-CCSEEECTTSTTGGGCSSHHHH
T ss_pred             HHhhCCCCCEEECCCCCCCCCccchhHHhhCCCCCEEECCCC-ccCCchhhhhcccC-CcceEEccCCcCccccCcchhH
Confidence            33467888888888888876  44566678888888888884 55543 23333334 88888888887532      12


Q ss_pred             HHHHHhCCCCCCEEec
Q 012186          123 GMKAFAGLINLVKLDL  138 (469)
Q Consensus       123 ~~~~~~~l~~L~~L~l  138 (469)
                      ....+..+++|+.|+=
T Consensus       243 ~~~il~~~P~L~~LDg  258 (267)
T 3rw6_A          243 ISAIRERFPKLLRLDG  258 (267)
T ss_dssp             HHHHHHHCTTCCEESS
T ss_pred             HHHHHHHCcccCeECC
Confidence            2345567777777763

>1pgv_A TMD-1, tropomodulin TMD-1; structural genomics, PSI, protein structure initiative, southeast collaboratory for structural genomics secsg; 1.80A {Caenorhabditis elegans} SCOP: c.10.1.1

Probab=97.88  E-value=0.00021  Score=58.24  Aligned_cols=37  Identities=14%  Similarity=0.069  Sum_probs=18.3

Q ss_pred             cCCCCCeeeeCCC---CCCHHH----HHHHhcCCCCCeeeccCC
Q 012186          394 NFKNLRSLEICGG---GLTDAG----VKHIKDLSSLTLLNLSQN  430 (469)
Q Consensus       394 ~~~~L~~L~l~~~---~~~~~~----~~~l~~~~~L~~L~l~~~  430 (469)
                      .-+.|+.|+++++   .+....    .+.+..-++|++|+++.|
T Consensus       124 ~N~tL~~L~L~n~~~~~ig~~g~~~ia~aL~~N~tL~~L~l~~~  167 (197)
T 1pgv_A          124 VTQSIVEFKADNQRQSVLGNQVEMDMMMAIEENESLLRVGISFA  167 (197)
T ss_dssp             TTCCCSEEECCCCSSCCCCHHHHHHHHHHHHHCSSCCEEECCCC
T ss_pred             hCCceeEEECCCCcCcCcCHHHHHHHHHHHHhCCCcCeEeccCC
Confidence            3445555555543   333322    233344566666666655

>3rfe_A Platelet glycoprotein IB beta chain; platelet surface receptor, GPIX, cell adhesion; HET: NAG; 1.25A {Homo sapiens} PDB: 3rez_A*

Probab=95.20  E-value=0.0044  Score=46.98  Aligned_cols=57  Identities=21%  Similarity=0.103  Sum_probs=43.4

Q ss_pred             CEeecCCCCCC-hhHHHHhHcCCCCCeeeeCCCCCCHHHHHHHhcCCCCCeeeccCCCCC
Q 012186          375 THLDLFGARIT-DSGAAYLRNFKNLRSLEICGGGLTDAGVKHIKDLSSLTLLNLSQNCNL  433 (469)
Q Consensus       375 ~~L~l~~~~~~-~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~l  433 (469)
                      ..++.+++.++ ..+|..+  .++|+.|+|++|.++.+.+..|..+++|+.|+|++|+..
T Consensus        11 ~~v~Cs~~~L~~~~vP~~l--p~~l~~L~Ls~N~l~~l~~~~f~~l~~L~~L~L~~NP~~   68 (130)
T 3rfe_A           11 TLVDCGRRGLTWASLPTAF--PVDTTELVLTGNNLTALPPGLLDALPALRTAHLGANPWR   68 (130)
T ss_dssp             TEEECCSSCCCTTTSCSCC--CTTCSEEECTTSCCSSCCTTTGGGCTTCCEEECCSSCCB
T ss_pred             CEEEeCCCCCccccCCCCC--CcCCCEEECCCCcCCccChhhhhhccccCEEEecCCCee
Confidence            36777777776 1233322  457999999999999887777888999999999999743

>3rfe_A Platelet glycoprotein IB beta chain; platelet surface receptor, GPIX, cell adhesion; HET: NAG; 1.25A {Homo sapiens} PDB: 3rez_A*

Probab=94.56  E-value=0.012  Score=44.54  Aligned_cols=55  Identities=18%  Similarity=0.224  Sum_probs=43.6

Q ss_pred             cEEEccCCCCC--HHHHHHHhcC-CCCCEeecCCCCCChhHHHHhHcCCCCCeeeeCCCCCC
Q 012186          351 KSLNLDARQIT--DTGLAALTSL-TGLTHLDLFGARITDSGAAYLRNFKNLRSLEICGGGLT  409 (469)
Q Consensus       351 ~~L~l~~~~~~--~~~~~~l~~~-~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~  409 (469)
                      ..++.++..++  ..+ .   .+ ++|+.|+|++|.++...+..|..+++|+.|++.+|.+.
T Consensus        11 ~~v~Cs~~~L~~~~vP-~---~lp~~l~~L~Ls~N~l~~l~~~~f~~l~~L~~L~L~~NP~~   68 (130)
T 3rfe_A           11 TLVDCGRRGLTWASLP-T---AFPVDTTELVLTGNNLTALPPGLLDALPALRTAHLGANPWR   68 (130)
T ss_dssp             TEEECCSSCCCTTTSC-S---CCCTTCSEEECTTSCCSSCCTTTGGGCTTCCEEECCSSCCB
T ss_pred             CEEEeCCCCCccccCC-C---CCCcCCCEEECCCCcCCccChhhhhhccccCEEEecCCCee
Confidence            36677777776  432 1   23 47999999999999988888999999999999998654

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

ID	Length	Definition	E-value
Query	469
d2omza2	384	c.10.2.1 (A:33-416) Internalin A {Listeria monocyt	1e-13
d2omza2	384	c.10.2.1 (A:33-416) Internalin A {Listeria monocyt	7e-08
d2omza2	384	c.10.2.1 (A:33-416) Internalin A {Listeria monocyt	0.002
d1z7xw1	460	c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (	1e-09
d1z7xw1	460	c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (	3e-08
d1z7xw1	460	c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (	9e-08
d1z7xw1	460	c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (	2e-07
d1z7xw1	460	c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (	3e-07
d1z7xw1	460	c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (	9e-07
d1z7xw1	460	c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (	1e-06
d1z7xw1	460	c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (	3e-06
d1z7xw1	460	c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (	8e-06
d1z7xw1	460	c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (	2e-05
d1z7xw1	460	c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (	5e-05
d1z7xw1	460	c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (	5e-05
d1z7xw1	460	c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (	6e-05
d1z7xw1	460	c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (	8e-05
d1xkua_	305	c.10.2.7 (A:) Decorin {Cow (Bos taurus) [TaxId: 99	9e-09
d1xkua_	305	c.10.2.7 (A:) Decorin {Cow (Bos taurus) [TaxId: 99	4e-08
d1xkua_	305	c.10.2.7 (A:) Decorin {Cow (Bos taurus) [TaxId: 99	4e-06
d1xkua_	305	c.10.2.7 (A:) Decorin {Cow (Bos taurus) [TaxId: 99	1e-05
d1xkua_	305	c.10.2.7 (A:) Decorin {Cow (Bos taurus) [TaxId: 99	2e-05
d1xkua_	305	c.10.2.7 (A:) Decorin {Cow (Bos taurus) [TaxId: 99	3e-04
d2astb2	284	c.10.1.3 (B:2136-2419) Cyclin A/CDK2-associated p1	1e-08
d2astb2	284	c.10.1.3 (B:2136-2419) Cyclin A/CDK2-associated p1	1e-08
d2astb2	284	c.10.1.3 (B:2136-2419) Cyclin A/CDK2-associated p1	7e-07
d2astb2	284	c.10.1.3 (B:2136-2419) Cyclin A/CDK2-associated p1	2e-06
d2astb2	284	c.10.1.3 (B:2136-2419) Cyclin A/CDK2-associated p1	9e-06
d1h6ua2	227	c.10.2.1 (A:36-262) Internalin H {Listeria monocyt	3e-06
d1h6ua2	227	c.10.2.1 (A:36-262) Internalin H {Listeria monocyt	7e-06
d1h6ua2	227	c.10.2.1 (A:36-262) Internalin H {Listeria monocyt	9e-05
d1h6ua2	227	c.10.2.1 (A:36-262) Internalin H {Listeria monocyt	3e-04
d1h6ta2	210	c.10.2.1 (A:31-240) Internalin B {Listeria monocyt	4e-06
d1h6ta2	210	c.10.2.1 (A:31-240) Internalin B {Listeria monocyt	6e-05
d1h6ta2	210	c.10.2.1 (A:31-240) Internalin B {Listeria monocyt	2e-04
d1h6ta2	210	c.10.2.1 (A:31-240) Internalin B {Listeria monocyt	0.004
d2omxa2	199	c.10.2.1 (A:37-235) Internalin B {Listeria monocyt	1e-04
d2omxa2	199	c.10.2.1 (A:37-235) Internalin B {Listeria monocyt	0.001
d2ca6a1	344	c.10.1.2 (A:2-345) Rna1p (RanGAP1), N-terminal dom	3e-04
d2ca6a1	344	c.10.1.2 (A:2-345) Rna1p (RanGAP1), N-terminal dom	0.004
d1dcea3	124	c.10.2.2 (A:444-567) Rab geranylgeranyltransferase	0.002

>d2omza2 c.10.2.1 (A:33-416) Internalin A {Listeria monocytogenes [TaxId: 1639]} Length = 384

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin A
species: Listeria monocytogenes [TaxId: 1639]

 Score = 70.4 bits (171), Expect = 1e-13
 Identities = 80/386 (20%), Positives = 141/386 (36%), Gaps = 36/386 (9%)

Query: 57  SSLLSVDLSGSDVTDSGLIHLKDCSNLQSLDFNFCIQISDGGLEHLRGLSNLTSLSFRRN 116
           +  +   L  ++VTD   +   D   + +L  +    I    ++ +  L+NLT ++F  N
Sbjct: 22  AEKMKTVLGKTNVTD--TVSQTDLDQVTTLQADRL-GIKS--IDGVEYLNNLTQINFSNN 76

Query: 117 NAITAQGMKAFAGLINLVKLDLERCTRIHGGLVNLKGLMKLESLNIKWCNCITDSDMKPL 176
                  +     L  LV + +          +     +   +L       I        
Sbjct: 77  QL---TDITPLKNLTKLVDILMNNNQIADITPLANLTNLTGLTLFNNQITDIDPLKNLTN 133

Query: 177 SGLTNLKSLQISCSKVTDSGIAYLKG------LQKLTLLNLEGCPVTAACL------DSL 224
                L S  IS         +  +            L NL                  L
Sbjct: 134 LNRLELSSNTISDISALSGLTSLQQLSFGNQVTDLKPLANLTTLERLDISSNKVSDISVL 193

Query: 225 SALGSLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNLD 284
           + L +L  L     Q+S         + +L  L+L  N++ D  +  L  LTNL  L+L 
Sbjct: 194 AKLTNLESLIATNNQIS--DITPLGILTNLDELSLNGNQLKD--IGTLASLTNLTDLDLA 249

Query: 285 SCGIGDEGLVNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISDGSLRKL 344
           +  I    L  L+GL  L  L+L   Q+  S +  L+GLT L ++ L+   + D S    
Sbjct: 250 NNQI--SNLAPLSGLTKLTELKLGANQI--SNISPLAGLTALTNLELNENQLEDISPIS- 304

Query: 345 AGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLFGARITDSGAAYLRNFKNLRSLEIC 404
             L +L  L L    I+   ++ ++SLT L  L     +++D  +  L N  N+  L   
Sbjct: 305 -NLKNLTYLTLYFNNIS--DISPVSSLTKLQRLFFANNKVSDVSS--LANLTNINWLSAG 359

Query: 405 GGGLTDAGVKHIKDLSSLTLLNLSQN 430
              ++   +  + +L+ +T L L+  
Sbjct: 360 HNQIS--DLTPLANLTRITQLGLNDQ 383

>d2omza2 c.10.2.1 (A:33-416) Internalin A {Listeria monocytogenes [TaxId: 1639]} Length = 384

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin A
species: Listeria monocytogenes [TaxId: 1639]

 Score = 51.9 bits (123), Expect = 7e-08
 Identities = 71/358 (19%), Positives = 139/358 (38%), Gaps = 51/358 (14%)

Query: 130 LINLVKLDLERCTRIHGGLVNLKGLMKLESLNIKWCNCITDSDMKPLSGLTNLKSLQISC 189
           L  +  L  +R      G+ ++ G+  L +L     +    +D+ PL  LT L  + ++ 
Sbjct: 43  LDQVTTLQADRL-----GIKSIDGVEYLNNLTQINFSNNQLTDITPLKNLTKLVDILMNN 97

Query: 190 SKVTDSGIAYLKGLQKLTLLNLEGCPVTAACLD------------SLSALGSLFYLNLNR 237
           +++ D              L            +            ++S + +L  L   +
Sbjct: 98  NQIADITPLANLTNLTGLTLFNNQITDIDPLKNLTNLNRLELSSNTISDISALSGLTSLQ 157

Query: 238 CQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKG-LTNLESLNLDSCGIGDEGLVNL 296
                +       + +L  L            + +   LTNLESL   +  I    +  L
Sbjct: 158 QLSFGNQVTDLKPLANLTTLERLDISSNKVSDISVLAKLTNLESLIATNNQI--SDITPL 215

Query: 297 TGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISDGSLRKLAGLSSLKSLNLD 356
             L NL  L L+  Q+    +  L+ LTNL  ++L+   IS+  L  L+GL+ L  L L 
Sbjct: 216 GILTNLDELSLNGNQL--KDIGTLASLTNLTDLDLANNQISN--LAPLSGLTKLTELKLG 271

Query: 357 ARQITD--------------------TGLAALTSLTGLTHLDLFGARITDSGAAYLRNFK 396
           A QI++                      ++ +++L  LT+L L+   I+D     + +  
Sbjct: 272 ANQISNISPLAGLTALTNLELNENQLEDISPISNLKNLTYLTLYFNNISDISP--VSSLT 329

Query: 397 NLRSLEICGGGLTDAGVKHIKDLSSLTLLNLSQNCNLTDKTLELISGLTGLVSLNVSN 454
            L+ L      ++   V  + +L+++  L+   N  ++D  L  ++ LT +  L +++
Sbjct: 330 KLQRLFFANNKVS--DVSSLANLTNINWLSAGHN-QISD--LTPLANLTRITQLGLND 382

>d2omza2 c.10.2.1 (A:33-416) Internalin A {Listeria monocytogenes [TaxId: 1639]} Length = 384

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin A
species: Listeria monocytogenes [TaxId: 1639]

 Score = 38.4 bits (88), Expect = 0.002
 Identities = 20/102 (19%), Positives = 36/102 (35%), Gaps = 8/102 (7%)

Query: 37  CLGQYPGVNDKWMDVIASQGSSLLSVDLSGSDVTDSGLIHLKDCSNLQSLDFNFCIQISD 96
                   N        S   +L  + L  +++  S +  +   + LQ L F    ++S 
Sbjct: 287 LTNLELNENQLEDISPISNLKNLTYLTLYFNNI--SDISPVSSLTKLQRLFFANN-KVS- 342

Query: 97  GGLEHLRGLSNLTSLSFRRNNAITAQGMKAFAGLINLVKLDL 138
             +  L  L+N+  LS   N       +   A L  + +L L
Sbjct: 343 -DVSSLANLTNINWLSAGHNQ---ISDLTPLANLTRITQLGL 380

>d1z7xw1 c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (Homo sapiens) [TaxId: 9606]} Length = 460

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: 28-residue LRR
domain: Ribonuclease inhibitor
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 58.1 bits (138), Expect = 1e-09
 Identities = 15/90 (16%), Positives = 37/90 (41%), Gaps = 10/90 (11%)

Query: 253 SLKVLNLGFNEITDECLVHL-KGLTNLESLNLDSCGIGDEGLVNLT----GLCNLKCLEL 307
            ++ L++   E++D     L   L   + + LD CG+ +    +++        L  L L
Sbjct: 3   DIQSLDIQCEELSDARWAELLPLLQQCQVVRLDDCGLTEARCKDISSALRVNPALAELNL 62

Query: 308 SDTQVGSSGLRHL-----SGLTNLESINLS 332
              ++G  G+  +     +    ++ ++L 
Sbjct: 63  RSNELGDVGVHCVLQGLQTPSCKIQKLSLQ 92

>d1z7xw1 c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (Homo sapiens) [TaxId: 9606]} Length = 460

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: 28-residue LRR
domain: Ribonuclease inhibitor
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 53.4 bits (126), Expect = 3e-08
 Identities = 16/91 (17%), Positives = 35/91 (38%), Gaps = 10/91 (10%)

Query: 325 NLESINLSFTGISDGSLRKLA-GLSSLKSLNLDARQITDTGL----AALTSLTGLTHLDL 379
           +++S+++    +SD    +L   L   + + LD   +T+       +AL     L  L+L
Sbjct: 3   DIQSLDIQCEELSDARWAELLPLLQQCQVVRLDDCGLTEARCKDISSALRVNPALAELNL 62

Query: 380 FGARITDSGAAYL-----RNFKNLRSLEICG 405
               + D G   +          ++ L +  
Sbjct: 63  RSNELGDVGVHCVLQGLQTPSCKIQKLSLQN 93

>d1z7xw1 c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (Homo sapiens) [TaxId: 9606]} Length = 460

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: 28-residue LRR
domain: Ribonuclease inhibitor
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 51.9 bits (122), Expect = 9e-08
 Identities = 13/91 (14%), Positives = 36/91 (39%), Gaps = 10/91 (10%)

Query: 301 NLKCLELSDTQVGSSGLRHL-SGLTNLESINLSFTGISDGSLRKLA----GLSSLKSLNL 355
           +++ L++   ++  +    L   L   + + L   G+++   + ++       +L  LNL
Sbjct: 3   DIQSLDIQCEELSDARWAELLPLLQQCQVVRLDDCGLTEARCKDISSALRVNPALAELNL 62

Query: 356 DARQITDTGLAALTSL-----TGLTHLDLFG 381
            + ++ D G+  +          +  L L  
Sbjct: 63  RSNELGDVGVHCVLQGLQTPSCKIQKLSLQN 93

>d1z7xw1 c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (Homo sapiens) [TaxId: 9606]} Length = 460

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: 28-residue LRR
domain: Ribonuclease inhibitor
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 51.1 bits (120), Expect = 2e-07
 Identities = 24/116 (20%), Positives = 44/116 (37%), Gaps = 32/116 (27%)

Query: 181 NLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACLDSLSALGSLFYLNLNRCQL 240
           +++SL I C +++D+  A L                       L  L     + L+ C L
Sbjct: 3   DIQSLDIQCEELSDARWAEL-----------------------LPLLQQCQVVRLDDCGL 39

Query: 241 SDDGCEKFSKI----GSLKVLNLGFNEITDECLVHL-----KGLTNLESLNLDSCG 287
           ++  C+  S       +L  LNL  NE+ D  +  +          ++ L+L +C 
Sbjct: 40  TEARCKDISSALRVNPALAELNLRSNELGDVGVHCVLQGLQTPSCKIQKLSLQNCC 95

>d1z7xw1 c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (Homo sapiens) [TaxId: 9606]} Length = 460

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: 28-residue LRR
domain: Ribonuclease inhibitor
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 50.4 bits (118), Expect = 3e-07
 Identities = 20/80 (25%), Positives = 31/80 (38%), Gaps = 9/80 (11%)

Query: 253 SLKVLNLGFNEITDECLVH----LKGLTNLESLNLDSCGIGDEGLVNLTG-----LCNLK 303
            L+VL L   +++D         L    +L  L+L +  +GD G++ L        C L+
Sbjct: 370 VLRVLWLADCDVSDSSCSSLAATLLANHSLRELDLSNNCLGDAGILQLVESVRQPGCLLE 429

Query: 304 CLELSDTQVGSSGLRHLSGL 323
            L L D          L  L
Sbjct: 430 QLVLYDIYWSEEMEDRLQAL 449

>d1z7xw1 c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (Homo sapiens) [TaxId: 9606]} Length = 460

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: 28-residue LRR
domain: Ribonuclease inhibitor
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 48.8 bits (114), Expect = 9e-07
 Identities = 21/80 (26%), Positives = 29/80 (36%), Gaps = 9/80 (11%)

Query: 229 SLFYLNLNRCQLSDDGCEK----FSKIGSLKVLNLGFNEITDECLVHL-----KGLTNLE 279
            L  L L  C +SD  C           SL+ L+L  N + D  ++ L     +    LE
Sbjct: 370 VLRVLWLADCDVSDSSCSSLAATLLANHSLRELDLSNNCLGDAGILQLVESVRQPGCLLE 429

Query: 280 SLNLDSCGIGDEGLVNLTGL 299
            L L      +E    L  L
Sbjct: 430 QLVLYDIYWSEEMEDRLQAL 449

>d1z7xw1 c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (Homo sapiens) [TaxId: 9606]} Length = 460

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: 28-residue LRR
domain: Ribonuclease inhibitor
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 48.0 bits (112), Expect = 1e-06
 Identities = 20/90 (22%), Positives = 34/90 (37%), Gaps = 9/90 (10%)

Query: 271 HLKGLTNLESLNLDSCGIGDEGLVN----LTGLCNLKCLELSDTQVGSSGLRHLSG---- 322
             +  + L  L L  C + D    +    L    +L+ L+LS+  +G +G+  L      
Sbjct: 364 LGQPGSVLRVLWLADCDVSDSSCSSLAATLLANHSLRELDLSNNCLGDAGILQLVESVRQ 423

Query: 323 -LTNLESINLSFTGISDGSLRKLAGLSSLK 351
               LE + L     S+    +L  L   K
Sbjct: 424 PGCLLEQLVLYDIYWSEEMEDRLQALEKDK 453

>d1z7xw1 c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (Homo sapiens) [TaxId: 9606]} Length = 460

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: 28-residue LRR
domain: Ribonuclease inhibitor
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 47.3 bits (110), Expect = 3e-06
 Identities = 20/91 (21%), Positives = 38/91 (41%), Gaps = 11/91 (12%)

Query: 374 LTHLDLFGARITDSGAAYL-RNFKNLRSLEICGGGLTDAGVKHI----KDLSSLTLLNLS 428
           +  LD+    ++D+  A L    +  + + +   GLT+A  K I    +   +L  LNL 
Sbjct: 4   IQSLDIQCEELSDARWAELLPLLQQCQVVRLDDCGLTEARCKDISSALRVNPALAELNLR 63

Query: 429 QNCNLTDKTLELI-----SGLTGLVSLNVSN 454
            N  L D  +  +     +    +  L++ N
Sbjct: 64  SN-ELGDVGVHCVLQGLQTPSCKIQKLSLQN 93

>d1z7xw1 c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (Homo sapiens) [TaxId: 9606]} Length = 460

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: 28-residue LRR
domain: Ribonuclease inhibitor
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 45.7 bits (106), Expect = 8e-06
 Identities = 17/77 (22%), Positives = 34/77 (44%), Gaps = 6/77 (7%)

Query: 397 NLRSLEICGGGLTDAGVKHI-KDLSSLTLLNLSQNCNLTDKTLELIS----GLTGLVSLN 451
           +++SL+I    L+DA    +   L    ++ L  +C LT+   + IS        L  LN
Sbjct: 3   DIQSLDIQCEELSDARWAELLPLLQQCQVVRLD-DCGLTEARCKDISSALRVNPALAELN 61

Query: 452 VSNSRITSAGLRHLNHA 468
           + ++ +   G+  +   
Sbjct: 62  LRSNELGDVGVHCVLQG 78

>d1z7xw1 c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (Homo sapiens) [TaxId: 9606]} Length = 460

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: 28-residue LRR
domain: Ribonuclease inhibitor
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 44.6 bits (103), Expect = 2e-05
 Identities = 16/81 (19%), Positives = 30/81 (37%), Gaps = 9/81 (11%)

Query: 348 SSLKSLNLDARQITDTGLA----ALTSLTGLTHLDLFGARITDSGAAYL-----RNFKNL 398
           S L+ L L    ++D+  +     L +   L  LDL    + D+G   L     +    L
Sbjct: 369 SVLRVLWLADCDVSDSSCSSLAATLLANHSLRELDLSNNCLGDAGILQLVESVRQPGCLL 428

Query: 399 RSLEICGGGLTDAGVKHIKDL 419
             L +     ++     ++ L
Sbjct: 429 EQLVLYDIYWSEEMEDRLQAL 449

>d1z7xw1 c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (Homo sapiens) [TaxId: 9606]} Length = 460

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: 28-residue LRR
domain: Ribonuclease inhibitor
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 43.0 bits (99), Expect = 5e-05
 Identities = 14/94 (14%), Positives = 35/94 (37%), Gaps = 6/94 (6%)

Query: 157 LESLNIKWCNCITDSDMKPL-SGLTNLKSLQISCSKVTDSGIAY----LKGLQKLTLLNL 211
           ++SL+I+ C  ++D+    L   L   + +++    +T++        L+    L  LNL
Sbjct: 4   IQSLDIQ-CEELSDARWAELLPLLQQCQVVRLDDCGLTEARCKDISSALRVNPALAELNL 62

Query: 212 EGCPVTAACLDSLSALGSLFYLNLNRCQLSDDGC 245
               +    +  +          + +  L +   
Sbjct: 63  RSNELGDVGVHCVLQGLQTPSCKIQKLSLQNCCL 96

>d1z7xw1 c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (Homo sapiens) [TaxId: 9606]} Length = 460

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: 28-residue LRR
domain: Ribonuclease inhibitor
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 43.0 bits (99), Expect = 5e-05
 Identities = 17/90 (18%), Positives = 33/90 (36%), Gaps = 7/90 (7%)

Query: 82  NLQSLDFNFCIQISDGGLEHL-RGLSNLTSLSFRRNNAITAQGMKAFAGLI----NLVKL 136
           ++QSLD   C ++SD     L   L     +       +T    K  +  +     L +L
Sbjct: 3   DIQSLDIQ-CEELSDARWAELLPLLQQCQVVRLDDCG-LTEARCKDISSALRVNPALAEL 60

Query: 137 DLERCTRIHGGLVNLKGLMKLESLNIKWCN 166
           +L        G+  +   ++  S  I+  +
Sbjct: 61  NLRSNELGDVGVHCVLQGLQTPSCKIQKLS 90

>d1z7xw1 c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (Homo sapiens) [TaxId: 9606]} Length = 460

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: 28-residue LRR
domain: Ribonuclease inhibitor
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 43.0 bits (99), Expect = 6e-05
 Identities = 21/95 (22%), Positives = 35/95 (36%), Gaps = 10/95 (10%)

Query: 319 HLSGLTNLESINLSFTGISDGSLRKLA----GLSSLKSLNLDARQITDTGLAALTS---- 370
                + L  + L+   +SD S   LA       SL+ L+L    + D G+  L      
Sbjct: 364 LGQPGSVLRVLWLADCDVSDSSCSSLAATLLANHSLRELDLSNNCLGDAGILQLVESVRQ 423

Query: 371 -LTGLTHLDLFGARITDSGAAYLRN-FKNLRSLEI 403
               L  L L+    ++     L+   K+  SL +
Sbjct: 424 PGCLLEQLVLYDIYWSEEMEDRLQALEKDKPSLRV 458

>d1z7xw1 c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (Homo sapiens) [TaxId: 9606]} Length = 460

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: 28-residue LRR
domain: Ribonuclease inhibitor
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 42.3 bits (97), Expect = 8e-05
 Identities = 20/87 (22%), Positives = 33/87 (37%), Gaps = 9/87 (10%)

Query: 198 AYLKGLQKLTLLNLEGCPVTAACL----DSLSALGSLFYLNLNRCQLSDDGCEKFSKI-- 251
              +    L +L L  C V+ +       +L A  SL  L+L+   L D G  +  +   
Sbjct: 363 GLGQPGSVLRVLWLADCDVSDSSCSSLAATLLANHSLRELDLSNNCLGDAGILQLVESVR 422

Query: 252 ---GSLKVLNLGFNEITDECLVHLKGL 275
                L+ L L     ++E    L+ L
Sbjct: 423 QPGCLLEQLVLYDIYWSEEMEDRLQAL 449

>d1xkua_ c.10.2.7 (A:) Decorin {Cow (Bos taurus) [TaxId: 9913]} Length = 305

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Decorin
species: Cow (Bos taurus) [TaxId: 9913]

 Score = 54.3 bits (129), Expect = 9e-09
 Identities = 53/282 (18%), Positives = 93/282 (32%), Gaps = 15/282 (5%)

Query: 106 SNLTSLSFRRNNAITAQGMKAFAGLINLVKLDLERCTRIHGGLVNLKGLMKLESLNIKWC 165
            +   L  + N  IT      F  L NL  L L               L+KLE L +   
Sbjct: 31  PDTALLDLQNNK-ITEIKDGDFKNLKNLHTLILINNKISKISPGAFAPLVKLERLYL-SK 88

Query: 166 NCITDSDMKPLSGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACLDSLS 225
           N + +   K    L  L+  +   +KV  S    L  +  + L        +     +  
Sbjct: 89  NQLKELPEKMPKTLQELRVHENEITKVRKSVFNGLNQMIVVELGT-NPLKSSGIENGAFQ 147

Query: 226 ALGSLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNLDS 285
            +  L Y+ +    ++           SL  L+L  N+IT      LKGL NL  L L  
Sbjct: 148 GMKKLSYIRIADTNITTIPQGLPP---SLTELHLDGNKITKVDAASLKGLNNLAKLGLSF 204

Query: 286 CGIGDEGLVNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISD------G 339
             I      +L    +L+ L L++ ++       L+    ++ + L    IS        
Sbjct: 205 NSISAVDNGSLANTPHLRELHLNNNKL-VKVPGGLADHKYIQVVYLHNNNISAIGSNDFC 263

Query: 340 SLRKLAGLSSLKSLNLDARQITDTGL--AALTSLTGLTHLDL 379
                   +S   ++L +  +    +  +    +     + L
Sbjct: 264 PPGYNTKKASYSGVSLFSNPVQYWEIQPSTFRCVYVRAAVQL 305

>d1xkua_ c.10.2.7 (A:) Decorin {Cow (Bos taurus) [TaxId: 9913]} Length = 305

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Decorin
species: Cow (Bos taurus) [TaxId: 9913]

 Score = 52.3 bits (124), Expect = 4e-08
 Identities = 41/258 (15%), Positives = 91/258 (35%), Gaps = 11/258 (4%)

Query: 180 TNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACLDSLSALGSLFYLNLNRCQ 239
            +   L +  +K+T+      K L+ L  L L    ++     + + L  L  L L++ Q
Sbjct: 31  PDTALLDLQNNKITEIKDGDFKNLKNLHTLILINNKISKISPGAFAPLVKLERLYLSKNQ 90

Query: 240 LSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNLDSCGIGDEGLVNLTGL 299
           L +   +    +  L+V      ++       L  +  +E L  +             G+
Sbjct: 91  LKELPEKMPKTLQELRVHENEITKVRKSVFNGLNQMIVVE-LGTNPLKSSGIENGAFQGM 149

Query: 300 CNLKCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISDGSLRKLAGLSSLKSLNLDARQ 359
             L  + ++DT + +          +L  ++L    I+      L GL++L  L L    
Sbjct: 150 KKLSYIRIADTNITTI---PQGLPPSLTELHLDGNKITKVDAASLKGLNNLAKLGLSFNS 206

Query: 360 ITDTGLAALTSLTGLTHLDLFGARITDSGAAYLRNFKNLRSLEICGGGLTD------AGV 413
           I+     +L +   L  L L   ++         + K ++ + +    ++          
Sbjct: 207 ISAVDNGSLANTPHLRELHLNNNKLVKVPGGL-ADHKYIQVVYLHNNNISAIGSNDFCPP 265

Query: 414 KHIKDLSSLTLLNLSQNC 431
            +    +S + ++L  N 
Sbjct: 266 GYNTKKASYSGVSLFSNP 283

>d1xkua_ c.10.2.7 (A:) Decorin {Cow (Bos taurus) [TaxId: 9913]} Length = 305

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Decorin
species: Cow (Bos taurus) [TaxId: 9913]

 Score = 46.2 bits (108), Expect = 4e-06
 Identities = 38/180 (21%), Positives = 64/180 (35%), Gaps = 4/180 (2%)

Query: 253 SLKVLNLGFNEITDECLVHLKGLTNLESLNLDSCGIGDEGLVNLTGLCNLKCLELSDTQV 312
              +L+L  N+IT+      K L NL +L L +  I          L  L+ L LS  Q+
Sbjct: 32  DTALLDLQNNKITEIKDGDFKNLKNLHTLILINNKISKISPGAFAPLVKLERLYLSKNQL 91

Query: 313 GSSGLRHLSGLTNLESINLSFTGISDGSLRKLAGLSSLKSLNLDARQITDTGLAALTSLT 372
                +    L  L       T +       L  +  +  L  +  + +     A   + 
Sbjct: 92  KELPEKMPKTLQELRVHENEITKVRKSVFNGLNQMIVV-ELGTNPLKSSGIENGAFQGMK 150

Query: 373 GLTHLDLFGARITDSGAAYLRNFKNLRSLEICGGGLTDAGVKHIKDLSSLTLLNLSQNCN 432
            L+++ +    IT           +L  L + G  +T      +K L++L  L LS N  
Sbjct: 151 KLSYIRIADTNITTIPQG---LPPSLTELHLDGNKITKVDAASLKGLNNLAKLGLSFNSI 207

>d1xkua_ c.10.2.7 (A:) Decorin {Cow (Bos taurus) [TaxId: 9913]} Length = 305

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Decorin
species: Cow (Bos taurus) [TaxId: 9913]

 Score = 44.6 bits (104), Expect = 1e-05
 Identities = 46/258 (17%), Positives = 81/258 (31%), Gaps = 34/258 (13%)

Query: 157 LESLNIKWCNCITDSDMKPLSGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPV 216
              L+++  N IT+        L NL +L +  +K++         L KL  L L    +
Sbjct: 33  TALLDLQN-NKITEIKDGDFKNLKNLHTLILINNKISKISPGAFAPLVKLERLYLSKNQL 91

Query: 217 TA---------------------ACLDSLSALGSLFYLNLNRCQLSDDGCEK--FSKIGS 253
                                        + L  +  + L    L   G E   F  +  
Sbjct: 92  KELPEKMPKTLQELRVHENEITKVRKSVFNGLNQMIVVELGTNPLKSSGIENGAFQGMKK 151

Query: 254 LKVLNLGFNEITDECLVHLKGLTNLESLNLDSCGIGDEGLVNLTGLCNLKCLELSDTQVG 313
           L  + +    IT    +      +L  L+LD   I      +L GL NL  L LS   + 
Sbjct: 152 LSYIRIADTNITT---IPQGLPPSLTELHLDGNKITKVDAASLKGLNNLAKLGLSFNSIS 208

Query: 314 SSGLRHLSGLTNLESINLSFTGISDGSLRKLAGLSSLKSLNLDARQITD------TGLAA 367
           +     L+   +L  ++L+   +       LA    ++ + L    I+            
Sbjct: 209 AVDNGSLANTPHLRELHLNNNKLVK-VPGGLADHKYIQVVYLHNNNISAIGSNDFCPPGY 267

Query: 368 LTSLTGLTHLDLFGARIT 385
            T     + + LF   + 
Sbjct: 268 NTKKASYSGVSLFSNPVQ 285

>d1xkua_ c.10.2.7 (A:) Decorin {Cow (Bos taurus) [TaxId: 9913]} Length = 305

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Decorin
species: Cow (Bos taurus) [TaxId: 9913]

 Score = 43.9 bits (102), Expect = 2e-05
 Identities = 46/283 (16%), Positives = 90/283 (31%), Gaps = 16/283 (5%)

Query: 57  SSLLSVDLSGSDVTDSGLIHLKDCSNLQSLDFNFCIQISDGGLEHLRGLSNLTSLSFRRN 116
                +DL  + +T+      K+  NL +L      +IS         L  L  L   +N
Sbjct: 31  PDTALLDLQNNKITEIKDGDFKNLKNLHTLILINN-KISKISPGAFAPLVKLERLYLSKN 89

Query: 117 NAITAQGMKAFAGLINLVKLDLERCTRIHGGLVNLKGLMKLESLNIKWCNCITDSDMKPL 176
             +     K    L  L   + E           L  ++ +E          +  +    
Sbjct: 90  Q-LKELPEKMPKTLQELRVHENEITKVRKSVFNGLNQMIVVELGT--NPLKSSGIENGAF 146

Query: 177 SGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACLDSLSALGSLFYLNLN 236
            G+  L  ++I+ + +T         L +   L+L+G  +T     SL  L +L  L L+
Sbjct: 147 QGMKKLSYIRIADTNITTIPQGLPPSLTE---LHLDGNKITKVDAASLKGLNNLAKLGLS 203

Query: 237 RCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNLDSCGIGD------ 290
              +S       +    L+ L+L  N++       L     ++ + L +  I        
Sbjct: 204 FNSISAVDNGSLANTPHLRELHLNNNKLVK-VPGGLADHKYIQVVYLHNNNISAIGSNDF 262

Query: 291 EGLVNLTGLCNLKCLELSDTQVGSSGLRH--LSGLTNLESINL 331
                 T   +   + L    V    ++      +    ++ L
Sbjct: 263 CPPGYNTKKASYSGVSLFSNPVQYWEIQPSTFRCVYVRAAVQL 305

>d1xkua_ c.10.2.7 (A:) Decorin {Cow (Bos taurus) [TaxId: 9913]} Length = 305

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Decorin
species: Cow (Bos taurus) [TaxId: 9913]

 Score = 40.4 bits (93), Expect = 3e-04
 Identities = 20/136 (14%), Positives = 47/136 (34%), Gaps = 2/136 (1%)

Query: 324 TNLESINLSFTGISDGSLRKLAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLFGAR 383
            +   ++L    I++        L +L +L L   +I+     A   L  L  L L   +
Sbjct: 31  PDTALLDLQNNKITEIKDGDFKNLKNLHTLILINNKISKISPGAFAPLVKLERLYLSKNQ 90

Query: 384 ITDSGAAYLRNFKNLRSLEICGGGLTDAGVKHIKDLSSLTLLNLSQNCNLTDKTLELISG 443
           + +      +  + LR  E     +  +    +  +  + L         +        G
Sbjct: 91  LKELPEKMPKTLQELRVHENEITKVRKSVFNGLNQMIVVELGT--NPLKSSGIENGAFQG 148

Query: 444 LTGLVSLNVSNSRITS 459
           +  L  + ++++ IT+
Sbjct: 149 MKKLSYIRIADTNITT 164

>d2astb2 c.10.1.3 (B:2136-2419) Cyclin A/CDK2-associated p19, Skp2 {Human (Homo sapiens) [TaxId: 9606]} Length = 284

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: Cyclin A/CDK2-associated p19, Skp2
domain: Cyclin A/CDK2-associated p19, Skp2
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 54.0 bits (128), Expect = 1e-08
 Identities = 39/265 (14%), Positives = 82/265 (30%), Gaps = 23/265 (8%)

Query: 58  SLLSVDLSGSDVTDSGLIHLKDCSNLQSLDFNFCIQISDGGLEHLRGLSNLTSLSFRRNN 117
            +++     S +      H      +Q +D +  +         L   S L +LS     
Sbjct: 24  GVIAFRCPRSFMDQPLAEHFS-PFRVQHMDLSNSVIEVSTLHGILSQCSKLQNLSLEGLR 82

Query: 118 AITAQGMKAFAGLINLVKLDLERCTRIHGGLVNLKGLMKLESLNIKWCNCITDSDMKPLS 177
            ++   +   A   NLV+L+L  C+                   +  C+ + + ++    
Sbjct: 83  -LSDPIVNTLAKNSNLVRLNLSGCSGFS---------EFALQTLLSSCSRLDELNLSWCF 132

Query: 178 GLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACLDSLSALGSLFYLNLNR 237
             T                   L G +K    +     V             +     + 
Sbjct: 133 DFTEKHVQVAVAHVSETITQLNLSGYRKNLQKSDLSTLVRRCP-------NLVHLDLSDS 185

Query: 238 CQLSDDGCEKFSKIGSLKVLNL-GFNEITDECLVHLKGLTNLESLNLDSCGIGDEGLVNL 296
             L +D  ++F ++  L+ L+L    +I  E L+ L  +  L++L +    + D  L  L
Sbjct: 186 VMLKNDCFQEFFQLNYLQHLSLSRCYDIIPETLLELGEIPTLKTLQVFGI-VPDGTLQLL 244

Query: 297 TGLC---NLKCLELSDTQVGSSGLR 318
                   + C   +     + G +
Sbjct: 245 KEALPHLQINCSHFTTIARPTIGNK 269

>d2astb2 c.10.1.3 (B:2136-2419) Cyclin A/CDK2-associated p19, Skp2 {Human (Homo sapiens) [TaxId: 9606]} Length = 284

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: Cyclin A/CDK2-associated p19, Skp2
domain: Cyclin A/CDK2-associated p19, Skp2
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 53.6 bits (127), Expect = 1e-08
 Identities = 38/243 (15%), Positives = 81/243 (33%), Gaps = 14/243 (5%)

Query: 132 NLVKLDLERCTRIHGGLVNLKGLMKLESLNIKWCNCITDSDMKPLSGLTNLKSLQISCSK 191
            ++     R   +   L       +++ +++        +    LS  + L++L +   +
Sbjct: 24  GVIAFRCPRS-FMDQPLAEHFSPFRVQHMDLSNSVIEVSTLHGILSQCSKLQNLSLEGLR 82

Query: 192 VTDSGIAYLKGLQKLTLLNLEGC--------PVTAACLDSLSALGSLFYLNLNRCQLSDD 243
           ++D  +  L     L  LNL GC            +    L  L   +  +     +   
Sbjct: 83  LSDPIVNTLAKNSNLVRLNLSGCSGFSEFALQTLLSSCSRLDELNLSWCFDFTEKHVQVA 142

Query: 244 GCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNLDSC-GIGDEGLVNLTGLCNL 302
                  I  L +     N    +    ++   NL  L+L     + ++       L  L
Sbjct: 143 VAHVSETITQLNLSGYRKNLQKSDLSTLVRRCPNLVHLDLSDSVMLKNDCFQEFFQLNYL 202

Query: 303 KCLELSD-TQVGSSGLRHLSGLTNLESINLSFTGISDGSLRKLAGLSSLKSLNLDARQIT 361
           + L LS    +    L  L  +  L+++ +    + DG+L+ L    +L  L ++    T
Sbjct: 203 QHLSLSRCYDIIPETLLELGEIPTLKTLQVFGI-VPDGTLQLLK--EALPHLQINCSHFT 259

Query: 362 DTG 364
              
Sbjct: 260 TIA 262

>d2astb2 c.10.1.3 (B:2136-2419) Cyclin A/CDK2-associated p19, Skp2 {Human (Homo sapiens) [TaxId: 9606]} Length = 284

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: Cyclin A/CDK2-associated p19, Skp2
domain: Cyclin A/CDK2-associated p19, Skp2
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 48.2 bits (113), Expect = 7e-07
 Identities = 39/251 (15%), Positives = 78/251 (31%), Gaps = 12/251 (4%)

Query: 102 LRGLSNLTSLSFRRNNAITAQGMKAFAGLINLVKLDLERCTRIHGGLVN-LKGLMKLESL 160
              L +   ++FR   +   Q +        +  +DL         L   L    KL++L
Sbjct: 17  TGRLLSQGVIAFRCPRSFMDQPLAEHFSPFRVQHMDLSNSVIEVSTLHGILSQCSKLQNL 76

Query: 161 NIKWCNCITDSDMKPLSGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAAC 220
           +++    ++D  +  L+  +NL  L +S                   L  L         
Sbjct: 77  SLEGLR-LSDPIVNTLAKNSNLVRLNLSGCSGFSEFALQTLLSSCSRLDELNLSWCFDFT 135

Query: 221 LDSLSALGSLFYLNLNRCQLSD---------DGCEKFSKIGSLKVLNLGFNEITDECLVH 271
              +    +     + +  LS                     + +       + ++C   
Sbjct: 136 EKHVQVAVAHVSETITQLNLSGYRKNLQKSDLSTLVRRCPNLVHLDLSDSVMLKNDCFQE 195

Query: 272 LKGLTNLESLNLDSC-GIGDEGLVNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESIN 330
              L  L+ L+L  C  I  E L+ L  +  LK L++       +       L +L+   
Sbjct: 196 FFQLNYLQHLSLSRCYDIIPETLLELGEIPTLKTLQVFGIVPDGTLQLLKEALPHLQINC 255

Query: 331 LSFTGISDGSL 341
             FT I+  ++
Sbjct: 256 SHFTTIARPTI 266

>d2astb2 c.10.1.3 (B:2136-2419) Cyclin A/CDK2-associated p19, Skp2 {Human (Homo sapiens) [TaxId: 9606]} Length = 284

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: Cyclin A/CDK2-associated p19, Skp2
domain: Cyclin A/CDK2-associated p19, Skp2
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 47.0 bits (110), Expect = 2e-06
 Identities = 49/302 (16%), Positives = 96/302 (31%), Gaps = 25/302 (8%)

Query: 135 KLDLERCTRIHGGLVNLKGLMKLESLNIKWCNCITDSDMKPLSGLTNLKSLQISCSKVTD 194
            LDL     +H  +     L+    +  +      D  +        ++ + +S S +  
Sbjct: 4   TLDLTGKN-LHPDV--TGRLLSQGVIAFRCPRSFMDQPLAEHFSPFRVQHMDLSNSVIEV 60

Query: 195 SGI-AYLKGLQKLTLLNLEGCPVTAACLDSLSALGSLFYLNLNRCQLSDDGCEKFSKIGS 253
           S +   L    KL  L+LEG  ++   +++L+   +L  LNL+ C    +   +      
Sbjct: 61  STLHGILSQCSKLQNLSLEGLRLSDPIVNTLAKNSNLVRLNLSGCSGFSEFALQTLLSSC 120

Query: 254 LKVLNLGFNEITDECLVHLKGLTNLESLNLDSCGIGDEGLVNLTGLCNLKCLELSDTQVG 313
            +        + +  L      T        +        +NL+G           T   
Sbjct: 121 SR--------LDELNLSWCFDFTEKHVQVAVAHVSETITQLNLSGYRKNLQKSDLSTL-- 170

Query: 314 SSGLRHLSGLTNLESINLSFTGISDGSLRKLAGLSSLKSLNL-DARQITDTGLAALTSLT 372
                       +         + +   ++   L+ L+ L+L     I    L  L  + 
Sbjct: 171 -----VRRCPNLVHLDLSDSVMLKNDCFQEFFQLNYLQHLSLSRCYDIIPETLLELGEIP 225

Query: 373 GLTHLDLFGARITDSGAAYLRNFKNLRSLEICGGGLTDAGVKHIKDLSSLTLLNLSQNCN 432
            L  L +FG  + D     L+  + L  L+I     T      I +  +  +  +   C 
Sbjct: 226 TLKTLQVFGI-VPDGTLQLLK--EALPHLQINCSHFTTIARPTIGNKKNQEIWGIK--CR 280

Query: 433 LT 434
           LT
Sbjct: 281 LT 282

>d2astb2 c.10.1.3 (B:2136-2419) Cyclin A/CDK2-associated p19, Skp2 {Human (Homo sapiens) [TaxId: 9606]} Length = 284

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: Cyclin A/CDK2-associated p19, Skp2
domain: Cyclin A/CDK2-associated p19, Skp2
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 45.1 bits (105), Expect = 9e-06
 Identities = 44/246 (17%), Positives = 83/246 (33%), Gaps = 13/246 (5%)

Query: 233 LNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNLDSCGIGDEG 292
           L+L    L  D   +    G +       + + D+ L        ++ ++L +  I    
Sbjct: 5   LDLTGKNLHPDVTGRLLSQG-VIAFRCPRSFM-DQPLAEHFSPFRVQHMDLSNSVIEVST 62

Query: 293 LVNLTGLC-NLKCLELSDTQVGSSGLRHLSGLTNLESINLSF-----TGISDGSLRKLAG 346
           L  +   C  L+ L L   ++    +  L+  +NL  +NLS             L   + 
Sbjct: 63  LHGILSQCSKLQNLSLEGLRLSDPIVNTLAKNSNLVRLNLSGCSGFSEFALQTLLSSCSR 122

Query: 347 LSSLKSLNLDARQITDTGLAALTSLTGLTHLDLFG----ARITDSGAAYLRNFKNLRSLE 402
           L  L              +A       +T L+L G     + +D      R    +    
Sbjct: 123 LDELNLSWCFDFTEKHVQVAVAHVSETITQLNLSGYRKNLQKSDLSTLVRRCPNLVHLDL 182

Query: 403 ICGGGLTDAGVKHIKDLSSLTLLNLSQNCNLTDKTLELISGLTGLVSLNVSNSRITSAGL 462
                L +   +    L+ L  L+LS+  ++  +TL  +  +  L +L V    +    L
Sbjct: 183 SDSVMLKNDCFQEFFQLNYLQHLSLSRCYDIIPETLLELGEIPTLKTLQVFGI-VPDGTL 241

Query: 463 RHLNHA 468
           + L  A
Sbjct: 242 QLLKEA 247

>d1h6ua2 c.10.2.1 (A:36-262) Internalin H {Listeria monocytogenes [TaxId: 1639]} Length = 227

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin H
species: Listeria monocytogenes [TaxId: 1639]

 Score = 46.2 bits (108), Expect = 3e-06
 Identities = 45/227 (19%), Positives = 91/227 (40%), Gaps = 21/227 (9%)

Query: 57  SSLLSVDLSGSDVTDSGLIHLKDCSNLQSLDFNFCIQISDGGLEHLRGLSNLTSLSFRRN 116
           ++ + +    S+VTD   +   D   + +L       ++   +E ++ L+NL  L  + N
Sbjct: 19  ANAIKIAAGKSNVTD--TVTQADLDGITTLSAFGT-GVTT--IEGVQYLNNLIGLELKDN 73

Query: 117 NAITAQGMKAFAGLINLVKLDLERCTRIHGGLVNLKGLMKLESLNIKWCNCITDSDMKPL 176
                  +K      NL K+     +      V+    ++           ITD  + PL
Sbjct: 74  QITDLAPLK------NLTKITELELSGNPLKNVSAIAGLQSIKTLDLTSTQITD--VTPL 125

Query: 177 SGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACLDSLSALGSLFYLNLN 236
           +GL+NL+ L +  +++T+          +     L       + L  L+ L  L  L  +
Sbjct: 126 AGLSNLQVLYLDLNQITNISPLAGLTNLQ----YLSIGNAQVSDLTPLANLSKLTTLKAD 181

Query: 237 RCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNL 283
             ++SD      + + +L  ++L  N+I+D  +  L   +NL  + L
Sbjct: 182 DNKISD--ISPLASLPNLIEVHLKNNQISD--VSPLANTSNLFIVTL 224

>d1h6ua2 c.10.2.1 (A:36-262) Internalin H {Listeria monocytogenes [TaxId: 1639]} Length = 227

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin H
species: Listeria monocytogenes [TaxId: 1639]

 Score = 44.6 bits (104), Expect = 7e-06
 Identities = 48/219 (21%), Positives = 76/219 (34%), Gaps = 22/219 (10%)

Query: 175 PLSGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACLDSLSALGSLFYLN 234
           P   L N   +    S VTD        L  +T L+  G  VT   ++ +  L +L  L 
Sbjct: 14  PDPALANAIKIAAGKSNVTD--TVTQADLDGITTLSAFGTGVTT--IEGVQYLNNLIGLE 69

Query: 235 LNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNLDSCGIGDEGLV 294
           L   Q++D    K     +   L+    +            T   +    +      GL 
Sbjct: 70  LKDNQITDLAPLKNLTKITELELSGNPLKNVSAIAGLQSIKTLDLTSTQITDVTPLAGLS 129

Query: 295 NLTGL--------------CNLKCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISDGS 340
           NL  L                     LS      S L  L+ L+ L ++      ISD  
Sbjct: 130 NLQVLYLDLNQITNISPLAGLTNLQYLSIGNAQVSDLTPLANLSKLTTLKADDNKISD-- 187

Query: 341 LRKLAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDL 379
           +  LA L +L  ++L   QI+D  ++ L + + L  + L
Sbjct: 188 ISPLASLPNLIEVHLKNNQISD--VSPLANTSNLFIVTL 224

>d1h6ua2 c.10.2.1 (A:36-262) Internalin H {Listeria monocytogenes [TaxId: 1639]} Length = 227

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin H
species: Listeria monocytogenes [TaxId: 1639]

 Score = 41.6 bits (96), Expect = 9e-05
 Identities = 37/228 (16%), Positives = 68/228 (29%), Gaps = 19/228 (8%)

Query: 128 AGLINLVKLDLERCTRIHGGLVNLKGLMKLESLNIKWCNCITDSDMKPLSGLTNLKSLQI 187
             L N +K+   +        V    L  + +L+         + ++ +  L NL  L++
Sbjct: 16  PALANAIKIAAGKSNVT--DTVTQADLDGITTLSAFGTGV---TTIEGVQYLNNLIGLEL 70

Query: 188 SCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACLDSLSALGSLFYLNLNRCQLSDDGCEK 247
             +++TD              L+       +A     S                  G   
Sbjct: 71  KDNQITDLAPLKNLTKITELELSGNPLKNVSAIAGLQSIKTLDLTSTQITDVTPLAGLSN 130

Query: 248 FSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNLDSCGIGDEGLVNLTGLCNLKCLEL 307
              +          + +     +            L         L  L  L  L  L+ 
Sbjct: 131 LQVLYLDLNQITNISPLAGLTNLQ----------YLSIGNAQVSDLTPLANLSKLTTLKA 180

Query: 308 SDTQVGSSGLRHLSGLTNLESINLSFTGISDGSLRKLAGLSSLKSLNL 355
            D ++  S +  L+ L NL  ++L    ISD  +  LA  S+L  + L
Sbjct: 181 DDNKI--SDISPLASLPNLIEVHLKNNQISD--VSPLANTSNLFIVTL 224

>d1h6ua2 c.10.2.1 (A:36-262) Internalin H {Listeria monocytogenes [TaxId: 1639]} Length = 227

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin H
species: Listeria monocytogenes [TaxId: 1639]

 Score = 39.6 bits (91), Expect = 3e-04
 Identities = 32/212 (15%), Positives = 70/212 (33%), Gaps = 23/212 (10%)

Query: 257 LNLGFNEITDECLVHLKGLTNLESLNLDSCGIGDEGLVNLTGLCNLKCLELSDTQVGSSG 316
           +  G + +TD   V    L  + +L+    G+    +  +  L NL  LEL D Q+    
Sbjct: 24  IAAGKSNVTDT--VTQADLDGITTLSAFGTGVTT--IEGVQYLNNLIGLELKDNQITDLA 79

Query: 317 LRHLSGLTNLESINLSFTGISDGSLRKLAGLSSLKSLNLDARQITDTGLAALTSLTGLTH 376
                       ++ +            +  +   +           GL+ L  L    +
Sbjct: 80  PLKNLTKITELELSGNPLKNVSAIAGLQSIKTLDLTSTQITDVTPLAGLSNLQVLYLDLN 139

Query: 377 LDLFGARITD--------------SGAAYLRNFKNLRSLEICGGGLTDAGVKHIKDLSSL 422
                + +                S    L N   L +L+     ++D  +  +  L +L
Sbjct: 140 QITNISPLAGLTNLQYLSIGNAQVSDLTPLANLSKLTTLKADDNKISD--ISPLASLPNL 197

Query: 423 TLLNLSQNCNLTDKTLELISGLTGLVSLNVSN 454
             ++L  N  ++D  +  ++  + L  + ++N
Sbjct: 198 IEVHLK-NNQISD--VSPLANTSNLFIVTLTN 226

>d1h6ta2 c.10.2.1 (A:31-240) Internalin B {Listeria monocytogenes [TaxId: 1639]} Length = 210

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin B
species: Listeria monocytogenes [TaxId: 1639]

 Score = 45.4 bits (106), Expect = 4e-06
 Identities = 36/211 (17%), Positives = 64/211 (30%), Gaps = 16/211 (7%)

Query: 171 SDMKPLSGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACLDSLSALGSL 230
             +             +    VTD        L  +  +      +    +  +  L ++
Sbjct: 15  KQIFSDDAFAETIKDNLKKKSVTD--AVTQNELNSIDQIIANNSDIK--SVQGIQYLPNV 70

Query: 231 FYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNLDSCGIGD 290
             L LN  +L+D        + +LK L   F +      +                    
Sbjct: 71  TKLFLNGNKLTDIKP-----LANLKNLGWLFLDENKVKDLSSLKDLKKLKSLSLEHNGIS 125

Query: 291 EGLVNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISDGSLRKLAGLSSL 350
           +    +           ++     + L  L+ L  L   +   + I       LAGL+ L
Sbjct: 126 DINGLVHLPQLESLYLGNNKITDITVLSRLTKLDTLSLEDNQISDIVP-----LAGLTKL 180

Query: 351 KSLNLDARQITDTGLAALTSLTGLTHLDLFG 381
           ++L L    I+D  L AL  L  L  L+LF 
Sbjct: 181 QNLYLSKNHISD--LRALAGLKNLDVLELFS 209

>d1h6ta2 c.10.2.1 (A:31-240) Internalin B {Listeria monocytogenes [TaxId: 1639]} Length = 210

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin B
species: Listeria monocytogenes [TaxId: 1639]

 Score = 41.9 bits (97), Expect = 6e-05
 Identities = 39/204 (19%), Positives = 66/204 (32%), Gaps = 17/204 (8%)

Query: 129 GLINLVKLDLERCTRIHGGLVNLKGLMKLESLNIKWCNCITDSDMKPLSGLTNLKSLQIS 188
                +K +L++ +      V    L  ++ +     +      ++ +  L N+  L ++
Sbjct: 22  AFAETIKDNLKKKS--VTDAVTQNELNSIDQIIANNSDI---KSVQGIQYLPNVTKLFLN 76

Query: 189 CSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACLDSLSALGSLFYLNLNRCQLSDDGCEKF 248
            +K+T   I  L  L+ L  L L+   V                L  N     +      
Sbjct: 77  GNKLT--DIKPLANLKNLGWLFLDENKVKDLSSLKDLKKLKSLSLEHNGISDINGLVHLP 134

Query: 249 SKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNLDSCGIGDEGLVNLTGLCNLKCLELS 308
                    N   +      L  L          L         +V L GL  L+ L LS
Sbjct: 135 QLESLYLGNNKITDITVLSRLTKLD--------TLSLEDNQISDIVPLAGLTKLQNLYLS 186

Query: 309 DTQVGSSGLRHLSGLTNLESINLS 332
              +  S LR L+GL NL+ + L 
Sbjct: 187 KNHI--SDLRALAGLKNLDVLELF 208

>d1h6ta2 c.10.2.1 (A:31-240) Internalin B {Listeria monocytogenes [TaxId: 1639]} Length = 210

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin B
species: Listeria monocytogenes [TaxId: 1639]

 Score = 40.4 bits (93), Expect = 2e-04
 Identities = 41/198 (20%), Positives = 80/198 (40%), Gaps = 17/198 (8%)

Query: 257 LNLGFNEITDECLVHLKGLTNLESLNLDSCGIGDEGLVNLTGLCNLKCLELSDTQVGSSG 316
            NL    +TD   V    L +++ +  ++  I  + +  +  L N+  L L+  ++  + 
Sbjct: 29  DNLKKKSVTD--AVTQNELNSIDQIIANNSDI--KSVQGIQYLPNVTKLFLNGNKL--TD 82

Query: 317 LRHLSGLTNLESINLSFTGISDGSLRKLAGLSSLKSLNLDARQITDTGLAALTSLTGLTH 376
           ++ L+ L NL  + L    + D S  K       K  +L       + +  L  L  L  
Sbjct: 83  IKPLANLKNLGWLFLDENKVKDLSSLK----DLKKLKSLSLEHNGISDINGLVHLPQLES 138

Query: 377 LDLFGARITDSGAAYLRNFKNLRSLEICGGGLTDAGVKHIKDLSSLTLLNLSQNCNLTDK 436
           L L   +ITD         +  +   +       + +  +  L+ L  L LS+N +++D 
Sbjct: 139 LYLGNNKITD----ITVLSRLTKLDTLSLEDNQISDIVPLAGLTKLQNLYLSKN-HISD- 192

Query: 437 TLELISGLTGLVSLNVSN 454
            L  ++GL  L  L + +
Sbjct: 193 -LRALAGLKNLDVLELFS 209

>d1h6ta2 c.10.2.1 (A:31-240) Internalin B {Listeria monocytogenes [TaxId: 1639]} Length = 210

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin B
species: Listeria monocytogenes [TaxId: 1639]

 Score = 36.1 bits (82), Expect = 0.004
 Identities = 42/229 (18%), Positives = 68/229 (29%), Gaps = 43/229 (18%)

Query: 57  SSLLSVDLSGSDVTDSGLIHLKDCSNLQSLDFNFCIQISDGGLEHLRGLSNLTSLSFRRN 116
           +  +  +L    VTD   +   + +++  +  N     S  G+++L    N+T L    N
Sbjct: 24  AETIKDNLKKKSVTD--AVTQNELNSIDQIIANNSDIKSVQGIQYL---PNVTKLFLNGN 78

Query: 117 NAITAQGMKAFAGLINLVKLDLERCTRIHGGLVNLKGLMKLESLNIKWCNCITDSDMKPL 176
                  +K  A L NL  L L+         +     +K  SL     + I        
Sbjct: 79  KL---TDIKPLANLKNLGWLFLDENKVKDLSSLKDLKKLKSLSLEHNGISDINGLVH--- 132

Query: 177 SGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACLDSLSALGSLFYLNLN 236
                          +               L  L+   +    +  +  L  L      
Sbjct: 133 ---------LPQLESLYLGNNKITDITVLSRLTKLDTLSLEDNQISDIVPLAGL------ 177

Query: 237 RCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNLDS 285
                            L+ L L  N I+D  L  L GL NL+ L L S
Sbjct: 178 ---------------TKLQNLYLSKNHISD--LRALAGLKNLDVLELFS 209

>d2omxa2 c.10.2.1 (A:37-235) Internalin B {Listeria monocytogenes [TaxId: 1639]} Length = 199

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin B
species: Listeria monocytogenes [TaxId: 1639]

 Score = 40.8 bits (94), Expect = 1e-04
 Identities = 36/193 (18%), Positives = 67/193 (34%), Gaps = 20/193 (10%)

Query: 175 PLSGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACLDSLSALGSLFYLN 234
             + L       +  + VTD        L ++T L  +   + +  +D +  L +L  +N
Sbjct: 13  TDTALAEKMKTVLGKTNVTD--TVSQTDLDQVTTLQADRLGIKS--IDGVEYLNNLTQIN 68

Query: 235 LNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNLDSCGIGDEGLV 294
            +  QL+D    K        ++N                       N  +     + L 
Sbjct: 69  FSNNQLTDITPLKNLTKLVDILMNNNQIADITPLANLTNLTGLTLFNNQITDIDPLKNLT 128

Query: 295 NLTGLCNLKCLELSDTQVGS--------------SGLRHLSGLTNLESINLSFTGISDGS 340
           NL  L          + +                + L+ L+ LT LE +++S   +SD  
Sbjct: 129 NLNRLELSSNTISDISALSGLTSLQQLNFSSNQVTDLKPLANLTTLERLDISSNKVSD-- 186

Query: 341 LRKLAGLSSLKSL 353
           +  LA L++L+SL
Sbjct: 187 ISVLAKLTNLESL 199

>d2omxa2 c.10.2.1 (A:37-235) Internalin B {Listeria monocytogenes [TaxId: 1639]} Length = 199

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin B
species: Listeria monocytogenes [TaxId: 1639]

 Score = 37.7 bits (86), Expect = 0.001
 Identities = 38/187 (20%), Positives = 67/187 (35%), Gaps = 42/187 (22%)

Query: 57  SSLLSVDLSGSDVTDSGLIHLKDCSNLQSLDFNFCIQISDGGLEHLRGLSNLTSLSFRRN 116
           +  +   L  ++VTD   +   D   + +L  +    I    ++ +  L+NLT ++F  N
Sbjct: 18  AEKMKTVLGKTNVTD--TVSQTDLDQVTTLQADRL-GIKS--IDGVEYLNNLTQINFSNN 72

Query: 117 NA------------------------------------ITAQGMKAFAGLINLVKLDLER 140
                                                 +T    +           +L R
Sbjct: 73  QLTDITPLKNLTKLVDILMNNNQIADITPLANLTNLTGLTLFNNQITDIDPLKNLTNLNR 132

Query: 141 CTRIHGGLVNLKGLMKLESLNIKWCNCITDSDMKPLSGLTNLKSLQISCSKVTD-SGIAY 199
                  + ++  L  L SL     +    +D+KPL+ LT L+ L IS +KV+D S +A 
Sbjct: 133 LELSSNTISDISALSGLTSLQQLNFSSNQVTDLKPLANLTTLERLDISSNKVSDISVLAK 192

Query: 200 LKGLQKL 206
           L  L+ L
Sbjct: 193 LTNLESL 199

>d2ca6a1 c.10.1.2 (A:2-345) Rna1p (RanGAP1), N-terminal domain {Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]} Length = 344

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: Rna1p (RanGAP1), N-terminal domain
domain: Rna1p (RanGAP1), N-terminal domain
species: Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]

 Score = 40.6 bits (93), Expect = 3e-04
 Identities = 18/73 (24%), Positives = 27/73 (36%), Gaps = 11/73 (15%)

Query: 231 FYLNLNRCQLSDDGCEKFSKI------GSLKVLNLGFNEITDECLVHL-----KGLTNLE 279
             L LN C LS  G               L+ L L +NEI  + +  L     + + +L 
Sbjct: 246 RELGLNDCLLSARGAAAVVDAFSKLENIGLQTLRLQYNEIELDAVRTLKTVIDEKMPDLL 305

Query: 280 SLNLDSCGIGDEG 292
            L L+     +E 
Sbjct: 306 FLELNGNRFSEED 318

>d2ca6a1 c.10.1.2 (A:2-345) Rna1p (RanGAP1), N-terminal domain {Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]} Length = 344

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: Rna1p (RanGAP1), N-terminal domain
domain: Rna1p (RanGAP1), N-terminal domain
species: Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]

 Score = 36.8 bits (83), Expect = 0.004
 Identities = 15/67 (22%), Positives = 26/67 (38%), Gaps = 8/67 (11%)

Query: 253 SLKVLNLGFNEITDECLVH----LKGLTNLESLNLDSCGIGDEGLV----NLTGLCNLKC 304
           S++  +L  + IT E        L    +++ + L    IG E       N+    +L+ 
Sbjct: 4   SIEGKSLKLDAITTEDEKSVFAVLLEDDSVKEIVLSGNTIGTEAARWLSENIASKKDLEI 63

Query: 305 LELSDTQ 311
            E SD  
Sbjct: 64  AEFSDIF 70

>d1dcea3 c.10.2.2 (A:444-567) Rab geranylgeranyltransferase alpha-subunit, C-terminal domain {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 124

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Rab geranylgeranyltransferase alpha-subunit, C-terminal domain
domain: Rab geranylgeranyltransferase alpha-subunit, C-terminal domain
species: Rat (Rattus norvegicus) [TaxId: 10116]

 Score = 36.2 bits (83), Expect = 0.002
 Identities = 22/110 (20%), Positives = 38/110 (34%), Gaps = 8/110 (7%)

Query: 255 KVLNLGFNEITDECLVHLKGLTNLESLNLDSCGIGD--EGLVNLTGLCNLKCLELSDTQV 312
           +VL+L   ++T   L HL+ L  +  L+L    +      L  L  L  L+  + +   V
Sbjct: 1   RVLHLAHKDLTV--LCHLEQLLLVTHLDLSHNRLRALPPALAALRCLEVLQASDNALENV 58

Query: 313 GSSGLRHLSGLTNLESINLSFTGISDGSLRKLAGLSSLKSLNLDARQITD 362
                        L +  L        +++ L     L  LNL    +  
Sbjct: 59  DGVANLPRLQELLLCNNRLQ----QSAAIQPLVSCPRLVLLNLQGNSLCQ 104

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	469
d2omza2	384	Internalin A {Listeria monocytogenes [TaxId: 1639]	99.93
d2omza2	384	Internalin A {Listeria monocytogenes [TaxId: 1639]	99.93
d1z7xw1	460	Ribonuclease inhibitor {Human (Homo sapiens) [TaxI	99.89
d1z7xw1	460	Ribonuclease inhibitor {Human (Homo sapiens) [TaxI	99.88
d1ogqa_	313	Polygalacturonase inhibiting protein PGIP {Kidney	99.87
d1ogqa_	313	Polygalacturonase inhibiting protein PGIP {Kidney	99.86
d1xkua_	305	Decorin {Cow (Bos taurus) [TaxId: 9913]}	99.85
d1xkua_	305	Decorin {Cow (Bos taurus) [TaxId: 9913]}	99.83
d1ozna_	284	Reticulon 4 receptor (Nogo-66 receptor, Ngr) {Huma	99.83
d1ozna_	284	Reticulon 4 receptor (Nogo-66 receptor, Ngr) {Huma	99.81
d2astb2	284	Cyclin A/CDK2-associated p19, Skp2 {Human (Homo sa	99.8
d2astb2	284	Cyclin A/CDK2-associated p19, Skp2 {Human (Homo sa	99.78
d1p9ag_	266	von Willebrand factor binding domain of glycoprote	99.76
d1p9ag_	266	von Willebrand factor binding domain of glycoprote	99.74
d2ca6a1	344	Rna1p (RanGAP1), N-terminal domain {Fission yeast	99.71
d1h6ua2	227	Internalin H {Listeria monocytogenes [TaxId: 1639]	99.69
d1h6ua2	227	Internalin H {Listeria monocytogenes [TaxId: 1639]	99.68
d2ca6a1	344	Rna1p (RanGAP1), N-terminal domain {Fission yeast	99.68
d1h6ta2	210	Internalin B {Listeria monocytogenes [TaxId: 1639]	99.61
d2omxa2	199	Internalin B {Listeria monocytogenes [TaxId: 1639]	99.6
d2omxa2	199	Internalin B {Listeria monocytogenes [TaxId: 1639]	99.6
d1h6ta2	210	Internalin B {Listeria monocytogenes [TaxId: 1639]	99.59
d1xwdc1	242	Follicle-stimulating hormone receptor {Human (Homo	99.53
d1jl5a_	353	Leucine rich effector protein YopM {Yersinia pesti	99.52
d1xwdc1	242	Follicle-stimulating hormone receptor {Human (Homo	99.48
d1jl5a_	353	Leucine rich effector protein YopM {Yersinia pesti	99.47
d1a9na_	162	Splicesomal U2A' protein {Human (Homo sapiens) [Ta	99.47
d1a9na_	162	Splicesomal U2A' protein {Human (Homo sapiens) [Ta	99.39
d1w8aa_	192	Slit {Fruit fly (Drosophila melanogaster) [TaxId:	99.36
d1w8aa_	192	Slit {Fruit fly (Drosophila melanogaster) [TaxId:	99.35
d1dcea3	124	Rab geranylgeranyltransferase alpha-subunit, C-ter	99.26
d1dcea3	124	Rab geranylgeranyltransferase alpha-subunit, C-ter	99.23
d1m9la_	198	Outer arm dynein light chain 1 {Green algae (Chlam	99.18
d1m9la_	198	Outer arm dynein light chain 1 {Green algae (Chlam	99.09
d2ifga3	156	High affinity nerve growth factor receptor, N-term	98.91
d2ifga3	156	High affinity nerve growth factor receptor, N-term	98.8
d1pgva_	167	Tropomodulin C-terminal domain {nematode (Caenorha	98.42
d1pgva_	167	Tropomodulin C-terminal domain {nematode (Caenorha	98.25
d1io0a_	166	Tropomodulin C-terminal domain {Chicken (Gallus ga	98.23
d1io0a_	166	Tropomodulin C-terminal domain {Chicken (Gallus ga	98.13
d1koha1	162	mRNA export factor tap {Human (Homo sapiens) [TaxI	98.11
d1koha1	162	mRNA export factor tap {Human (Homo sapiens) [TaxI	97.97

>d2omza2 c.10.2.1 (A:33-416) Internalin A {Listeria monocytogenes [TaxId: 1639]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin A
species: Listeria monocytogenes [TaxId: 1639]

Probab=99.93  E-value=6.1e-24  Score=197.32  Aligned_cols=190  Identities=31%  Similarity=0.452  Sum_probs=97.5

Q ss_pred             hcCCCccEEEccCCCCchHHHHHhhCCCCCCEEecCCCCCChHHHHHhhCCCCCCEEeccCCCCChhhHHHhhCCCCCcE
Q 012186          249 SKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNLDSCGIGDEGLVNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLES  328 (469)
Q Consensus       249 ~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~  328 (469)
                      ..+++++.++++++.+++..+  ....++|+.|++++|.+...  ..+..+++|+.+++.+|.+....  .++.+++|+.
T Consensus       194 ~~l~~~~~l~l~~n~i~~~~~--~~~~~~L~~L~l~~n~l~~~--~~l~~l~~L~~L~l~~n~l~~~~--~~~~~~~L~~  267 (384)
T d2omza2         194 AKLTNLESLIATNNQISDITP--LGILTNLDELSLNGNQLKDI--GTLASLTNLTDLDLANNQISNLA--PLSGLTKLTE  267 (384)
T ss_dssp             GGCTTCSEEECCSSCCCCCGG--GGGCTTCCEEECCSSCCCCC--GGGGGCTTCSEEECCSSCCCCCG--GGTTCTTCSE
T ss_pred             ccccccceeeccCCccCCCCc--ccccCCCCEEECCCCCCCCc--chhhcccccchhccccCccCCCC--cccccccCCE
Confidence            334444444444444443221  23334455555555544332  13344455555555555444322  2445555555


Q ss_pred             EecccCCCCchHHHhhhCCCCCcEEEccCCCCCHHHHHHHhcCCCCCEeecCCCCCChhHHHHhHcCCCCCeeeeCCCCC
Q 012186          329 INLSFTGISDGSLRKLAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLFGARITDSGAAYLRNFKNLRSLEICGGGL  408 (469)
Q Consensus       329 L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~  408 (469)
                      |+++++.+....  .+..++.++.+.+..+.++..  ..+..+++++.|++++|++++..  .+..+++|+.|++++|++
T Consensus       268 L~l~~~~l~~~~--~~~~~~~l~~l~~~~n~l~~~--~~~~~~~~l~~L~ls~n~l~~l~--~l~~l~~L~~L~L~~n~l  341 (384)
T d2omza2         268 LKLGANQISNIS--PLAGLTALTNLELNENQLEDI--SPISNLKNLTYLTLYFNNISDIS--PVSSLTKLQRLFFANNKV  341 (384)
T ss_dssp             EECCSSCCCCCG--GGTTCTTCSEEECCSSCCSCC--GGGGGCTTCSEEECCSSCCSCCG--GGGGCTTCCEEECCSSCC
T ss_pred             eeccCcccCCCC--ccccccccccccccccccccc--cccchhcccCeEECCCCCCCCCc--ccccCCCCCEEECCCCCC
Confidence            555555544322  244555556666655555542  23445566666666666665532  245566666666666666


Q ss_pred             CHHHHHHHhcCCCCCeeeccCCCCCChhHHHHHHhCcccccccccCC
Q 012186          409 TDAGVKHIKDLSSLTLLNLSQNCNLTDKTLELISGLTGLVSLNVSNS  455 (469)
Q Consensus       409 ~~~~~~~l~~~~~L~~L~l~~~~~l~~~~~~~l~~l~~L~~L~l~~~  455 (469)
                      ++..  .+..+++|++|++++| .+++..+  +.++++|+.|+|++|
T Consensus       342 ~~l~--~l~~l~~L~~L~l~~N-~l~~l~~--l~~l~~L~~L~L~~N  383 (384)
T d2omza2         342 SDVS--SLANLTNINWLSAGHN-QISDLTP--LANLTRITQLGLNDQ  383 (384)
T ss_dssp             CCCG--GGGGCTTCCEEECCSS-CCCBCGG--GTTCTTCSEEECCCE
T ss_pred             CCCh--hHcCCCCCCEEECCCC-cCCCChh--hccCCCCCEeeCCCC
Confidence            5532  3556666666666666 5555443  556666666666654

>d2omza2 c.10.2.1 (A:33-416) Internalin A {Listeria monocytogenes [TaxId: 1639]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin A
species: Listeria monocytogenes [TaxId: 1639]

Probab=99.93  E-value=3.6e-24  Score=198.91  Aligned_cols=340  Identities=26%  Similarity=0.325  Sum_probs=232.0

Q ss_pred             CCccEEEecCCCCChHhhHhhhcCCCCCEEecCCCcccChhHhHhhhCCCCCCEEeCCCCCcCcHHHHHHHhCCCCCCEE
Q 012186           57 SSLLSVDLSGSDVTDSGLIHLKDCSNLQSLDFNFCIQISDGGLEHLRGLSNLTSLSFRRNNAITAQGMKAFAGLINLVKL  136 (469)
Q Consensus        57 ~~l~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L  136 (469)
                      .++++|++++++|++.  +.+..+++|++|++++| .+++..  .++++++|++|++++|.+.. ..  .++.+++|+.|
T Consensus        44 ~~l~~L~l~~~~I~~l--~gl~~L~nL~~L~Ls~N-~l~~l~--~l~~L~~L~~L~L~~n~i~~-i~--~l~~l~~L~~L  115 (384)
T d2omza2          44 DQVTTLQADRLGIKSI--DGVEYLNNLTQINFSNN-QLTDIT--PLKNLTKLVDILMNNNQIAD-IT--PLANLTNLTGL  115 (384)
T ss_dssp             TTCCEEECCSSCCCCC--TTGGGCTTCCEEECCSS-CCCCCG--GGTTCTTCCEEECCSSCCCC-CG--GGTTCTTCCEE
T ss_pred             CCCCEEECCCCCCCCc--cccccCCCCCEEeCcCC-cCCCCc--cccCCccccccccccccccc-cc--ccccccccccc
Confidence            4677777777777642  34667777777777774 455532  36677777777777776422 11  26667777777


Q ss_pred             ecccccccccccccccCCCCccEEEccCCCCCChhhhhcccCCCCCCEEEecccccChhhhhhccCCCCCCeeeccCCCC
Q 012186          137 DLERCTRIHGGLVNLKGLMKLESLNIKWCNCITDSDMKPLSGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPV  216 (469)
Q Consensus       137 ~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~  216 (469)
                      +++++.....  ........+.......+. +.......  .....+........   .....+...+.........+..
T Consensus       116 ~~~~~~~~~~--~~~~~~~~~~~~~~~~~~-l~~~~~~~--~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~  187 (384)
T d2omza2         116 TLFNNQITDI--DPLKNLTNLNRLELSSNT-ISDISALS--GLTSLQQLSFGNQV---TDLKPLANLTTLERLDISSNKV  187 (384)
T ss_dssp             ECCSSCCCCC--GGGTTCTTCSEEEEEEEE-ECCCGGGT--TCTTCSEEEEEESC---CCCGGGTTCTTCCEEECCSSCC
T ss_pred             cccccccccc--cccccccccccccccccc-cccccccc--cccccccccccccc---chhhhhcccccccccccccccc
Confidence            7766432221  112233344444333311 11111111  11111111111110   1112233344444444444433


Q ss_pred             chhhHHhhhcCCCCcEEECCCCCCChhHHHHhhcCCCccEEEccCCCCchHHHHHhhCCCCCCEEecCCCCCChHHHHHh
Q 012186          217 TAACLDSLSALGSLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNLDSCGIGDEGLVNL  296 (469)
Q Consensus       217 ~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~  296 (469)
                      ..  ......+++++.+.+.++.+....+  +..+++|+.++++++.+++.  ..+..+++|+.+++++|.+.+..  .+
T Consensus       188 ~~--~~~~~~l~~~~~l~l~~n~i~~~~~--~~~~~~L~~L~l~~n~l~~~--~~l~~l~~L~~L~l~~n~l~~~~--~~  259 (384)
T d2omza2         188 SD--ISVLAKLTNLESLIATNNQISDITP--LGILTNLDELSLNGNQLKDI--GTLASLTNLTDLDLANNQISNLA--PL  259 (384)
T ss_dssp             CC--CGGGGGCTTCSEEECCSSCCCCCGG--GGGCTTCCEEECCSSCCCCC--GGGGGCTTCSEEECCSSCCCCCG--GG
T ss_pred             cc--ccccccccccceeeccCCccCCCCc--ccccCCCCEEECCCCCCCCc--chhhcccccchhccccCccCCCC--cc
Confidence            32  3456778999999999998876543  46678999999999998763  35788999999999999887543  47


Q ss_pred             hCCCCCCEEeccCCCCChhhHHHhhCCCCCcEEecccCCCCchHHHhhhCCCCCcEEEccCCCCCHHHHHHHhcCCCCCE
Q 012186          297 TGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISDGSLRKLAGLSSLKSLNLDARQITDTGLAALTSLTGLTH  376 (469)
Q Consensus       297 ~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~  376 (469)
                      ..+++|+.++++++.+....  .+..++.++.+.+..+.+.+.  ..+..+++++.|++++|.+++..  .+..+++|++
T Consensus       260 ~~~~~L~~L~l~~~~l~~~~--~~~~~~~l~~l~~~~n~l~~~--~~~~~~~~l~~L~ls~n~l~~l~--~l~~l~~L~~  333 (384)
T d2omza2         260 SGLTKLTELKLGANQISNIS--PLAGLTALTNLELNENQLEDI--SPISNLKNLTYLTLYFNNISDIS--PVSSLTKLQR  333 (384)
T ss_dssp             TTCTTCSEEECCSSCCCCCG--GGTTCTTCSEEECCSSCCSCC--GGGGGCTTCSEEECCSSCCSCCG--GGGGCTTCCE
T ss_pred             cccccCCEeeccCcccCCCC--ccccccccccccccccccccc--cccchhcccCeEECCCCCCCCCc--ccccCCCCCE
Confidence            78999999999999887643  477899999999999988764  34778899999999999998753  4789999999


Q ss_pred             eecCCCCCChhHHHHhHcCCCCCeeeeCCCCCCHHHHHHHhcCCCCCeeeccCC
Q 012186          377 LDLFGARITDSGAAYLRNFKNLRSLEICGGGLTDAGVKHIKDLSSLTLLNLSQN  430 (469)
Q Consensus       377 L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~  430 (469)
                      |++++|++++..  .+..+++|+.|++++|++++..|  +.++++|+.|+|++|
T Consensus       334 L~L~~n~l~~l~--~l~~l~~L~~L~l~~N~l~~l~~--l~~l~~L~~L~L~~N  383 (384)
T d2omza2         334 LFFANNKVSDVS--SLANLTNINWLSAGHNQISDLTP--LANLTRITQLGLNDQ  383 (384)
T ss_dssp             EECCSSCCCCCG--GGGGCTTCCEEECCSSCCCBCGG--GTTCTTCSEEECCCE
T ss_pred             EECCCCCCCCCh--hHcCCCCCCEEECCCCcCCCChh--hccCCCCCEeeCCCC
Confidence            999999998743  68899999999999999998754  788999999999987

>d1z7xw1 c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: 28-residue LRR
domain: Ribonuclease inhibitor
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.89  E-value=3.9e-20  Score=175.59  Aligned_cols=353  Identities=24%  Similarity=0.316  Sum_probs=174.0

Q ss_pred             CCccEEEecCCCCChHh-hHhhhcCCCCCEEecCCCcccChhHh----HhhhCCCCCCEEeCCCCCcCcHHHHHHHhC--
Q 012186           57 SSLLSVDLSGSDVTDSG-LIHLKDCSNLQSLDFNFCIQISDGGL----EHLRGLSNLTSLSFRRNNAITAQGMKAFAG--  129 (469)
Q Consensus        57 ~~l~~L~l~~~~~~~~~-~~~~~~~~~L~~L~l~~~~~~~~~~~----~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~--  129 (469)
                      .++++||++++++++.. ...+..++++++|++++| .+++...    ..+..+++|++|++++|.+ +......+..  
T Consensus         2 ~~l~~ld~~~~~i~~~~~~~l~~~l~~l~~L~L~~~-~i~~~~~~~l~~~L~~~~~L~~LdLs~N~i-~~~~~~~l~~~l   79 (460)
T d1z7xw1           2 LDIQSLDIQCEELSDARWAELLPLLQQCQVVRLDDC-GLTEARCKDISSALRVNPALAELNLRSNEL-GDVGVHCVLQGL   79 (460)
T ss_dssp             EEEEEEEEESCCCCHHHHHHHHHHHTTCSEEEEESS-CCCHHHHHHHHHHHHTCTTCCEEECTTCCC-HHHHHHHHHHTT
T ss_pred             CCCCEEEeeCCcCChHHHHHHHHhCCCCCEEEeCCC-CCCHHHHHHHHHHHhcCCCCCEEECcCCcC-ChHHHHHHHHHH
Confidence            46889999999998754 455678899999999997 5776554    3456889999999998874 4333333332  


Q ss_pred             ---CCCCCEEecccccccccc----cccccCCCCccEEEccCCCCCChhhhhccc-----CCCCCCEEEecccccChhh-
Q 012186          130 ---LINLVKLDLERCTRIHGG----LVNLKGLMKLESLNIKWCNCITDSDMKPLS-----GLTNLKSLQISCSKVTDSG-  196 (469)
Q Consensus       130 ---l~~L~~L~l~~~~~~~~~----~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~-----~~~~L~~L~l~~~~~~~~~-  196 (469)
                         ..+|++|++++|......    ...+..+++|++|++.++. +.+.....+.     ................... 
T Consensus        80 ~~~~~~L~~L~L~~n~it~~~~~~l~~~l~~~~~L~~L~L~~N~-i~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~  158 (460)
T d1z7xw1          80 QTPSCKIQKLSLQNCCLTGAGCGVLSSTLRTLPTLQELHLSDNL-LGDAGLQLLCEGLLDPQCRLEKLQLEYCSLSAASC  158 (460)
T ss_dssp             CSTTCCCCEEECTTSCCBGGGHHHHHHHTTSCTTCCEEECCSSB-CHHHHHHHHHHHHTSTTCCCCEEECTTSCCBGGGH
T ss_pred             hcCCCCCCEEECCCCCccccccccccchhhcccccccccccccc-chhhhhhhhhhcccccccccccccccccccchhhh
Confidence               246888888887533222    2345667777777777643 3332222211     1122233333322222111 


Q ss_pred             ---hhhccCCCCCCeeeccCCCCchhhHH----hhh-cCCCCcEEECCCCCCChhHH----HHhhcCCCccEEEccCCCC
Q 012186          197 ---IAYLKGLQKLTLLNLEGCPVTAACLD----SLS-ALGSLFYLNLNRCQLSDDGC----EKFSKIGSLKVLNLGFNEI  264 (469)
Q Consensus       197 ---~~~l~~l~~L~~L~l~~~~~~~~~~~----~~~-~~~~L~~L~l~~~~~~~~~~----~~~~~~~~L~~L~l~~~~~  264 (469)
                         ...+...+.++.+.++++........    .+. .......+.+.++.......    ..+...+.++.+.+.++..
T Consensus       159 ~~~~~~l~~~~~~~~~~ls~~~~~~~~~~~~~~~l~~~~~~~~~l~~~~~~~~~~~~~~~~~~l~~~~~~~~l~~~~n~~  238 (460)
T d1z7xw1         159 EPLASVLRAKPDFKELTVSNNDINEAGVRVLCQGLKDSPCQLEALKLESCGVTSDNCRDLCGIVASKASLRELALGSNKL  238 (460)
T ss_dssp             HHHHHHHHHCTTCCEEECCSSBCHHHHHHHHHHHHHHSCCCCCEEECTTSCCBTTHHHHHHHHHHHCTTCCEEECCSSBC
T ss_pred             cccccccccccccccccccccccccccccccccccccccccccccccccccccchhhhcccccccccccccccchhhccc
Confidence               12234445566666665544322111    111 12344455555554432221    2233455566666655544


Q ss_pred             chHH-----HHHhhCCCCCCEEecCCCCCChHHH----HHhhCCCCCCEEeccCCCCChhhHHHhh-----CCCCCcEEe
Q 012186          265 TDEC-----LVHLKGLTNLESLNLDSCGIGDEGL----VNLTGLCNLKCLELSDTQVGSSGLRHLS-----GLTNLESIN  330 (469)
Q Consensus       265 ~~~~-----~~~~~~l~~L~~L~l~~~~~~~~~~----~~~~~~~~L~~L~l~~~~~~~~~~~~~~-----~~~~L~~L~  330 (469)
                      ....     .........++.+++++|.+.....    ..+...+.++.++++++.+.......+.     ..+.|+.+.
T Consensus       239 ~~~~~~~~~~~~~~~~~~l~~l~l~~n~i~~~~~~~~~~~l~~~~~l~~l~l~~n~i~~~~~~~l~~~l~~~~~~L~~l~  318 (460)
T d1z7xw1         239 GDVGMAELCPGLLHPSSRLRTLWIWECGITAKGCGDLCRVLRAKESLKELSLAGNELGDEGARLLCETLLEPGCQLESLW  318 (460)
T ss_dssp             HHHHHHHHHHHHTSTTCCCCEEECTTSCCCHHHHHHHHHHHHHCTTCCEEECTTCCCHHHHHHHHHHHHTSTTCCCCEEE
T ss_pred             cccccchhhcccccccccccccccccccccccccccccccccccccccccccccccccccccchhhcccccccccccccc
Confidence            3221     1112334456666666555543322    1123445555555555555443332221     223455555


Q ss_pred             cccCCCCchHHHhhh----CCCCCcEEEccCCCCCHHHHHHHh-----cCCCCCEeecCCCCCChhH----HHHhHcCCC
Q 012186          331 LSFTGISDGSLRKLA----GLSSLKSLNLDARQITDTGLAALT-----SLTGLTHLDLFGARITDSG----AAYLRNFKN  397 (469)
Q Consensus       331 l~~~~~~~~~~~~~~----~~~~L~~L~l~~~~~~~~~~~~l~-----~~~~L~~L~l~~~~~~~~~----~~~~~~~~~  397 (469)
                      ++++.++......++    ..++|++|++++|+++..+...+.     ..+.|++|++++|.+++..    +..+..+++
T Consensus       319 l~~~~l~~~~~~~l~~~~~~~~~L~~L~Ls~N~i~~~g~~~l~~~l~~~~~~L~~L~Ls~n~i~~~~~~~l~~~l~~~~~  398 (460)
T d1z7xw1         319 VKSCSFTAACCSHFSSVLAQNRFLLELQISNNRLEDAGVRELCQGLGQPGSVLRVLWLADCDVSDSSCSSLAATLLANHS  398 (460)
T ss_dssp             CTTSCCBGGGHHHHHHHHHHCSSCCEEECCSSBCHHHHHHHHHHHHTSTTCCCCEEECTTSCCCHHHHHHHHHHHHHCCC
T ss_pred             ccccchhhhhhhhcccccccccchhhhheeeecccCcccchhhhhhhcccCCCCEEECCCCCCChHHHHHHHHHHhcCCC
Confidence            555544443333222    234455555555544433222221     2233445555544444322    122333444


Q ss_pred             CCeeeeCCCCCCHHH
Q 012186          398 LRSLEICGGGLTDAG  412 (469)
Q Consensus       398 L~~L~l~~~~~~~~~  412 (469)
                      |++|++++|++++.+
T Consensus       399 L~~L~Ls~N~i~~~g  413 (460)
T d1z7xw1         399 LRELDLSNNCLGDAG  413 (460)
T ss_dssp             CCEEECCSSSCCHHH
T ss_pred             CCEEECCCCcCCHHH
Confidence            444444444444433

>d1z7xw1 c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: 28-residue LRR
domain: Ribonuclease inhibitor
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.88  E-value=4.2e-20  Score=175.33  Aligned_cols=382  Identities=22%  Similarity=0.228  Sum_probs=271.1

Q ss_pred             CCCEEecCCCcccChhHhHh-hhCCCCCCEEeCCCCCcCcH----HHHHHHhCCCCCCEEeccccccccccccc----cc
Q 012186           82 NLQSLDFNFCIQISDGGLEH-LRGLSNLTSLSFRRNNAITA----QGMKAFAGLINLVKLDLERCTRIHGGLVN----LK  152 (469)
Q Consensus        82 ~L~~L~l~~~~~~~~~~~~~-l~~~~~L~~L~l~~~~~~~~----~~~~~~~~l~~L~~L~l~~~~~~~~~~~~----l~  152 (469)
                      +|+.|++++ +.+++..... +..++++++|+|++|.+ +.    .+...+..+++|++|++++|.........    +.
T Consensus         3 ~l~~ld~~~-~~i~~~~~~~l~~~l~~l~~L~L~~~~i-~~~~~~~l~~~L~~~~~L~~LdLs~N~i~~~~~~~l~~~l~   80 (460)
T d1z7xw1           3 DIQSLDIQC-EELSDARWAELLPLLQQCQVVRLDDCGL-TEARCKDISSALRVNPALAELNLRSNELGDVGVHCVLQGLQ   80 (460)
T ss_dssp             EEEEEEEES-CCCCHHHHHHHHHHHTTCSEEEEESSCC-CHHHHHHHHHHHHTCTTCCEEECTTCCCHHHHHHHHHHTTC
T ss_pred             CCCEEEeeC-CcCChHHHHHHHHhCCCCCEEEeCCCCC-CHHHHHHHHHHHhcCCCCCEEECcCCcCChHHHHHHHHHHh
Confidence            689999987 6788876544 67899999999999974 43    33456789999999999998543322222    22


Q ss_pred             -CCCCccEEEccCCCCCChhh----hhcccCCCCCCEEEecccccChhhhhhc-----cCCCCCCeeeccCCCCchh---
Q 012186          153 -GLMKLESLNIKWCNCITDSD----MKPLSGLTNLKSLQISCSKVTDSGIAYL-----KGLQKLTLLNLEGCPVTAA---  219 (469)
Q Consensus       153 -~l~~L~~L~l~~~~~~~~~~----~~~~~~~~~L~~L~l~~~~~~~~~~~~l-----~~l~~L~~L~l~~~~~~~~---  219 (469)
                       ...+|++|++++|. +++..    ...+..+++|++|++++|.+.......+     ...................   
T Consensus        81 ~~~~~L~~L~L~~n~-it~~~~~~l~~~l~~~~~L~~L~L~~N~i~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~  159 (460)
T d1z7xw1          81 TPSCKIQKLSLQNCC-LTGAGCGVLSSTLRTLPTLQELHLSDNLLGDAGLQLLCEGLLDPQCRLEKLQLEYCSLSAASCE  159 (460)
T ss_dssp             STTCCCCEEECTTSC-CBGGGHHHHHHHTTSCTTCCEEECCSSBCHHHHHHHHHHHHTSTTCCCCEEECTTSCCBGGGHH
T ss_pred             cCCCCCCEEECCCCC-ccccccccccchhhccccccccccccccchhhhhhhhhhcccccccccccccccccccchhhhc
Confidence             24589999999975 55433    3456788999999999998876544333     1222344455544433321   


Q ss_pred             -hHHhhhcCCCCcEEECCCCCCChhHHHH----h-hcCCCccEEEccCCCCchH----HHHHhhCCCCCCEEecCCCCCC
Q 012186          220 -CLDSLSALGSLFYLNLNRCQLSDDGCEK----F-SKIGSLKVLNLGFNEITDE----CLVHLKGLTNLESLNLDSCGIG  289 (469)
Q Consensus       220 -~~~~~~~~~~L~~L~l~~~~~~~~~~~~----~-~~~~~L~~L~l~~~~~~~~----~~~~~~~l~~L~~L~l~~~~~~  289 (469)
                       ....+...+.++.+.+.++.........    + ........+.+..+.....    ....+...+.++.+.+.++...
T Consensus       160 ~~~~~l~~~~~~~~~~ls~~~~~~~~~~~~~~~l~~~~~~~~~l~~~~~~~~~~~~~~~~~~l~~~~~~~~l~~~~n~~~  239 (460)
T d1z7xw1         160 PLASVLRAKPDFKELTVSNNDINEAGVRVLCQGLKDSPCQLEALKLESCGVTSDNCRDLCGIVASKASLRELALGSNKLG  239 (460)
T ss_dssp             HHHHHHHHCTTCCEEECCSSBCHHHHHHHHHHHHHHSCCCCCEEECTTSCCBTTHHHHHHHHHHHCTTCCEEECCSSBCH
T ss_pred             ccccccccccccccccccccccccccccccccccccccccccccccccccccchhhhcccccccccccccccchhhcccc
Confidence             2334556789999999988765543222    2 2335677888887765532    2234566788999999998765


Q ss_pred             hHHH-----HHhhCCCCCCEEeccCCCCChhhHH----HhhCCCCCcEEecccCCCCchHHHhhh-----CCCCCcEEEc
Q 012186          290 DEGL-----VNLTGLCNLKCLELSDTQVGSSGLR----HLSGLTNLESINLSFTGISDGSLRKLA-----GLSSLKSLNL  355 (469)
Q Consensus       290 ~~~~-----~~~~~~~~L~~L~l~~~~~~~~~~~----~~~~~~~L~~L~l~~~~~~~~~~~~~~-----~~~~L~~L~l  355 (469)
                      ....     ........++.+++.+|.+......    .+...+.++.++++++.+.+.....+.     ..+.|+.+.+
T Consensus       240 ~~~~~~~~~~~~~~~~~l~~l~l~~n~i~~~~~~~~~~~l~~~~~l~~l~l~~n~i~~~~~~~l~~~l~~~~~~L~~l~l  319 (460)
T d1z7xw1         240 DVGMAELCPGLLHPSSRLRTLWIWECGITAKGCGDLCRVLRAKESLKELSLAGNELGDEGARLLCETLLEPGCQLESLWV  319 (460)
T ss_dssp             HHHHHHHHHHHTSTTCCCCEEECTTSCCCHHHHHHHHHHHHHCTTCCEEECTTCCCHHHHHHHHHHHHTSTTCCCCEEEC
T ss_pred             ccccchhhcccccccccccccccccccccccccccccccccccccccccccccccccccccchhhccccccccccccccc
Confidence            4322     2234567899999999988765432    345789999999999998776555443     3468999999


Q ss_pred             cCCCCCHHHHHHH----hcCCCCCEeecCCCCCChhHHHHh----H-cCCCCCeeeeCCCCCCHHHHH----HHhcCCCC
Q 012186          356 DARQITDTGLAAL----TSLTGLTHLDLFGARITDSGAAYL----R-NFKNLRSLEICGGGLTDAGVK----HIKDLSSL  422 (469)
Q Consensus       356 ~~~~~~~~~~~~l----~~~~~L~~L~l~~~~~~~~~~~~~----~-~~~~L~~L~l~~~~~~~~~~~----~l~~~~~L  422 (469)
                      +++.++......+    ...++|++|++++|++++.....+    . ..+.|+.|++++|.+++....    .+..+++|
T Consensus       320 ~~~~l~~~~~~~l~~~~~~~~~L~~L~Ls~N~i~~~g~~~l~~~l~~~~~~L~~L~Ls~n~i~~~~~~~l~~~l~~~~~L  399 (460)
T d1z7xw1         320 KSCSFTAACCSHFSSVLAQNRFLLELQISNNRLEDAGVRELCQGLGQPGSVLRVLWLADCDVSDSSCSSLAATLLANHSL  399 (460)
T ss_dssp             TTSCCBGGGHHHHHHHHHHCSSCCEEECCSSBCHHHHHHHHHHHHTSTTCCCCEEECTTSCCCHHHHHHHHHHHHHCCCC
T ss_pred             cccchhhhhhhhcccccccccchhhhheeeecccCcccchhhhhhhcccCCCCEEECCCCCCChHHHHHHHHHHhcCCCC
Confidence            9999887655444    467899999999999987654433    2 467899999999999976443    45678999


Q ss_pred             CeeeccCCCCCChhHHHHHH-----hCcccccccccCCCCCHHHHHhhhh
Q 012186          423 TLLNLSQNCNLTDKTLELIS-----GLTGLVSLNVSNSRITSAGLRHLNH  467 (469)
Q Consensus       423 ~~L~l~~~~~l~~~~~~~l~-----~l~~L~~L~l~~~~~~~~~~~~l~~  467 (469)
                      ++|+|++| .++......+.     ....|+.|++.++++.+++...+.+
T Consensus       400 ~~L~Ls~N-~i~~~g~~~l~~~l~~~~~~L~~l~l~~~~~~~~~~~~l~~  448 (460)
T d1z7xw1         400 RELDLSNN-CLGDAGILQLVESVRQPGCLLEQLVLYDIYWSEEMEDRLQA  448 (460)
T ss_dssp             CEEECCSS-SCCHHHHHHHHHHHTSTTCCCCEEECTTCCCCHHHHHHHHH
T ss_pred             CEEECCCC-cCCHHHHHHHHHHHHhCCCccCEEECCCCCCCHHHHHHHHH
Confidence            99999999 88887666553     2347999999999999988877754

>d1ogqa_ c.10.2.8 (A:) Polygalacturonase inhibiting protein PGIP {Kidney bean (Phaseolus vulgaris) [TaxId: 3885]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Polygalacturonase inhibiting protein PGIP
domain: Polygalacturonase inhibiting protein PGIP
species: Kidney bean (Phaseolus vulgaris) [TaxId: 3885]

Probab=99.87  E-value=1.6e-23  Score=188.38  Aligned_cols=259  Identities=17%  Similarity=0.129  Sum_probs=198.0

Q ss_pred             HHHHHHhcC---CCccEEEecCCCCCh--HhhHhhhcCCCCCEEecCCCcccChhHhHhhhCCCCCCEEeCCCCCcCcHH
Q 012186           48 WMDVIASQG---SSLLSVDLSGSDVTD--SGLIHLKDCSNLQSLDFNFCIQISDGGLEHLRGLSNLTSLSFRRNNAITAQ  122 (469)
Q Consensus        48 ~~~~~~~~~---~~l~~L~l~~~~~~~--~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~  122 (469)
                      |..+.|...   .+|++|+|+++.+++  .+|..+.++++|++|++++++.++...|..|+++++|++|++++|.+ ...
T Consensus        38 w~gv~C~~~~~~~~v~~L~L~~~~l~g~~~lp~~l~~L~~L~~L~Ls~~N~l~g~iP~~i~~L~~L~~L~Ls~N~l-~~~  116 (313)
T d1ogqa_          38 WLGVLCDTDTQTYRVNNLDLSGLNLPKPYPIPSSLANLPYLNFLYIGGINNLVGPIPPAIAKLTQLHYLYITHTNV-SGA  116 (313)
T ss_dssp             STTEEECCSSSCCCEEEEEEECCCCSSCEECCGGGGGCTTCSEEEEEEETTEESCCCGGGGGCTTCSEEEEEEECC-EEE
T ss_pred             CCCeEEeCCCCcEEEEEEECCCCCCCCCCCCChHHhcCccccccccccccccccccccccccccccchhhhccccc-ccc
Confidence            555555422   369999999998876  46789999999999999876677766788999999999999999874 444


Q ss_pred             HHHHHhCCCCCCEEecccccccccccccccCCCCccEEEccCCCCCChhhhhcccCCCCC-CEEEecccccChhhhhhcc
Q 012186          123 GMKAFAGLINLVKLDLERCTRIHGGLVNLKGLMKLESLNIKWCNCITDSDMKPLSGLTNL-KSLQISCSKVTDSGIAYLK  201 (469)
Q Consensus       123 ~~~~~~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~L-~~L~l~~~~~~~~~~~~l~  201 (469)
                      .+..+..+.+|++++++.|......+..+.+++++++++++++. +....+..+..+..+ +.+.+.++.++...+..+.
T Consensus       117 ~~~~~~~~~~L~~l~l~~N~~~~~~p~~l~~l~~L~~l~l~~n~-l~~~ip~~~~~l~~l~~~l~~~~n~l~~~~~~~~~  195 (313)
T d1ogqa_         117 IPDFLSQIKTLVTLDFSYNALSGTLPPSISSLPNLVGITFDGNR-ISGAIPDSYGSFSKLFTSMTISRNRLTGKIPPTFA  195 (313)
T ss_dssp             CCGGGGGCTTCCEEECCSSEEESCCCGGGGGCTTCCEEECCSSC-CEEECCGGGGCCCTTCCEEECCSSEEEEECCGGGG
T ss_pred             ccccccchhhhcccccccccccccCchhhccCcccceeeccccc-ccccccccccccccccccccccccccccccccccc
Confidence            56678889999999999987777777889999999999998844 554556666666665 7788888888776666666


Q ss_pred             CCCCCCeeeccCCCCchhhHHhhhcCCCCcEEECCCCCCChhHHHHhhcCCCccEEEccCCCCchHHHHHhhCCCCCCEE
Q 012186          202 GLQKLTLLNLEGCPVTAACLDSLSALGSLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESL  281 (469)
Q Consensus       202 ~l~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L  281 (469)
                      .+..+ .+++..+......+..+..+++++.+++.++.+.... ..+..+++|+.|++++|++++..|..+..+++|++|
T Consensus       196 ~l~~~-~l~l~~~~~~~~~~~~~~~~~~l~~l~~~~~~l~~~~-~~~~~~~~L~~L~Ls~N~l~g~iP~~l~~L~~L~~L  273 (313)
T d1ogqa_         196 NLNLA-FVDLSRNMLEGDASVLFGSDKNTQKIHLAKNSLAFDL-GKVGLSKNLNGLDLRNNRIYGTLPQGLTQLKFLHSL  273 (313)
T ss_dssp             GCCCS-EEECCSSEEEECCGGGCCTTSCCSEEECCSSEECCBG-GGCCCCTTCCEEECCSSCCEECCCGGGGGCTTCCEE
T ss_pred             ccccc-ccccccccccccccccccccccccccccccccccccc-cccccccccccccCccCeecccCChHHhCCCCCCEE
Confidence            66544 6788877666666667777888888888888776543 356777888888888888887777778888888888


Q ss_pred             ecCCCCCChHHHHHhhCCCCCCEEeccCCC
Q 012186          282 NLDSCGIGDEGLVNLTGLCNLKCLELSDTQ  311 (469)
Q Consensus       282 ~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~  311 (469)
                      ++++|.+.+..+ .++.+++|+.+++.+|+
T Consensus       274 ~Ls~N~l~g~iP-~~~~L~~L~~l~l~~N~  302 (313)
T d1ogqa_         274 NVSFNNLCGEIP-QGGNLQRFDVSAYANNK  302 (313)
T ss_dssp             ECCSSEEEEECC-CSTTGGGSCGGGTCSSS
T ss_pred             ECcCCcccccCC-CcccCCCCCHHHhCCCc
Confidence            888887764333 34556667767776664

>d1ogqa_ c.10.2.8 (A:) Polygalacturonase inhibiting protein PGIP {Kidney bean (Phaseolus vulgaris) [TaxId: 3885]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Polygalacturonase inhibiting protein PGIP
domain: Polygalacturonase inhibiting protein PGIP
species: Kidney bean (Phaseolus vulgaris) [TaxId: 3885]

Probab=99.86  E-value=2.6e-24  Score=193.54  Aligned_cols=248  Identities=17%  Similarity=0.189  Sum_probs=148.5

Q ss_pred             CCCCEEEecccccChh--hhhhccCCCCCCeeeccC-CCCchhhHHhhhcCCCCcEEECCCCCCChhHHHHhhcCCCccE
Q 012186          180 TNLKSLQISCSKVTDS--GIAYLKGLQKLTLLNLEG-CPVTAACLDSLSALGSLFYLNLNRCQLSDDGCEKFSKIGSLKV  256 (469)
Q Consensus       180 ~~L~~L~l~~~~~~~~--~~~~l~~l~~L~~L~l~~-~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~  256 (469)
                      .+++.|+++++.+.+.  .+..+.++++|++|++++ |.+....|..+.++++|++|++++|.+....+..+..+.+|+.
T Consensus        50 ~~v~~L~L~~~~l~g~~~lp~~l~~L~~L~~L~Ls~~N~l~g~iP~~i~~L~~L~~L~Ls~N~l~~~~~~~~~~~~~L~~  129 (313)
T d1ogqa_          50 YRVNNLDLSGLNLPKPYPIPSSLANLPYLNFLYIGGINNLVGPIPPAIAKLTQLHYLYITHTNVSGAIPDFLSQIKTLVT  129 (313)
T ss_dssp             CCEEEEEEECCCCSSCEECCGGGGGCTTCSEEEEEEETTEESCCCGGGGGCTTCSEEEEEEECCEEECCGGGGGCTTCCE
T ss_pred             EEEEEEECCCCCCCCCCCCChHHhcCccccccccccccccccccccccccccccchhhhccccccccccccccchhhhcc
Confidence            4688888888877653  346778888888888876 5666555677788888888888888777666666777777888


Q ss_pred             EEccCCCCchHHHHHhhCCCCCCEEecCCCCCChHHHHHhhCCCCC-CEEeccCCCCChhhHHHhhCCCCCcEEecccCC
Q 012186          257 LNLGFNEITDECLVHLKGLTNLESLNLDSCGIGDEGLVNLTGLCNL-KCLELSDTQVGSSGLRHLSGLTNLESINLSFTG  335 (469)
Q Consensus       257 L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~L-~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~  335 (469)
                      +++++|.+....+..+..++.++.+++++|.+....+..+..+.++ +.+.+.++.+....+..+..+..+ .+++..+.
T Consensus       130 l~l~~N~~~~~~p~~l~~l~~L~~l~l~~n~l~~~ip~~~~~l~~l~~~l~~~~n~l~~~~~~~~~~l~~~-~l~l~~~~  208 (313)
T d1ogqa_         130 LDFSYNALSGTLPPSISSLPNLVGITFDGNRISGAIPDSYGSFSKLFTSMTISRNRLTGKIPPTFANLNLA-FVDLSRNM  208 (313)
T ss_dssp             EECCSSEEESCCCGGGGGCTTCCEEECCSSCCEEECCGGGGCCCTTCCEEECCSSEEEEECCGGGGGCCCS-EEECCSSE
T ss_pred             cccccccccccCchhhccCcccceeeccccccccccccccccccccccccccccccccccccccccccccc-cccccccc
Confidence            8887777666566667777777777777776655444455555554 566666665544444344433322 45555544


Q ss_pred             CCchHHHhhhCCCCCcEEEccCCCCCHHHHHHHhcCCCCCEeecCCCCCChhHHHHhHcCCCCCeeeeCCCCCCHHHHHH
Q 012186          336 ISDGSLRKLAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLFGARITDSGAAYLRNFKNLRSLEICGGGLTDAGVKH  415 (469)
Q Consensus       336 ~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~  415 (469)
                      .....+..+..+++++.+++.++.+.... ..+..+++|+.|++++|++++.+|.++.++++|+.|++++|++++..|+ 
T Consensus       209 ~~~~~~~~~~~~~~l~~l~~~~~~l~~~~-~~~~~~~~L~~L~Ls~N~l~g~iP~~l~~L~~L~~L~Ls~N~l~g~iP~-  286 (313)
T d1ogqa_         209 LEGDASVLFGSDKNTQKIHLAKNSLAFDL-GKVGLSKNLNGLDLRNNRIYGTLPQGLTQLKFLHSLNVSFNNLCGEIPQ-  286 (313)
T ss_dssp             EEECCGGGCCTTSCCSEEECCSSEECCBG-GGCCCCTTCCEEECCSSCCEECCCGGGGGCTTCCEEECCSSEEEEECCC-
T ss_pred             ccccccccccccccccccccccccccccc-cccccccccccccCccCeecccCChHHhCCCCCCEEECcCCcccccCCC-
Confidence            44434444444555555555555544432 2334445555555555555544455555555555555555555443332 


Q ss_pred             HhcCCCCCeeeccCC
Q 012186          416 IKDLSSLTLLNLSQN  430 (469)
Q Consensus       416 l~~~~~L~~L~l~~~  430 (469)
                      ++.+++|+.+++++|
T Consensus       287 ~~~L~~L~~l~l~~N  301 (313)
T d1ogqa_         287 GGNLQRFDVSAYANN  301 (313)
T ss_dssp             STTGGGSCGGGTCSS
T ss_pred             cccCCCCCHHHhCCC
Confidence            233444444444444

>d1xkua_ c.10.2.7 (A:) Decorin {Cow (Bos taurus) [TaxId: 9913]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Decorin
species: Cow (Bos taurus) [TaxId: 9913]

Probab=99.85  E-value=8.7e-22  Score=176.23  Aligned_cols=244  Identities=19%  Similarity=0.218  Sum_probs=145.8

Q ss_pred             CCCCEEEecccccChhhhhhccCCCCCCeeeccCCCCchhhHHhhhcCCCCcEEECCCCCCChhHHHHhhcCCCccEEEc
Q 012186          180 TNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACLDSLSALGSLFYLNLNRCQLSDDGCEKFSKIGSLKVLNL  259 (469)
Q Consensus       180 ~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l  259 (469)
                      +++++|++++|.++......|.++++|++|+++++.+....+..|..+++|+.|++.+|++.....   ...+.++.|.+
T Consensus        31 ~~l~~L~Ls~N~i~~l~~~~f~~l~~L~~L~l~~n~~~~i~~~~f~~l~~L~~L~l~~n~l~~l~~---~~~~~l~~L~~  107 (305)
T d1xkua_          31 PDTALLDLQNNKITEIKDGDFKNLKNLHTLILINNKISKISPGAFAPLVKLERLYLSKNQLKELPE---KMPKTLQELRV  107 (305)
T ss_dssp             TTCCEEECCSSCCCCBCTTTTTTCTTCCEEECCSSCCCCBCTTTTTTCTTCCEEECCSSCCSBCCS---SCCTTCCEEEC
T ss_pred             CCCCEEECcCCcCCCcChhHhhccccccccccccccccccchhhhhCCCccCEecccCCccCcCcc---chhhhhhhhhc
Confidence            567888888887776666667777888888888877776666667777788888887777654321   23456677777


Q ss_pred             cCCCCchHHHHHhhCCCCCCEEecCCCCCCh--HHHHHhhCCCCCCEEeccCCCCChhhHHHhhCCCCCcEEecccCCCC
Q 012186          260 GFNEITDECLVHLKGLTNLESLNLDSCGIGD--EGLVNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSFTGIS  337 (469)
Q Consensus       260 ~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~--~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~  337 (469)
                      ..+.+.......+.....+..+....+....  .....+..+++|+.+++.++.+....   ...+++|+.|+++++...
T Consensus       108 ~~n~l~~l~~~~~~~~~~~~~l~~~~n~~~~~~~~~~~~~~l~~L~~l~l~~n~l~~l~---~~~~~~L~~L~l~~n~~~  184 (305)
T d1xkua_         108 HENEITKVRKSVFNGLNQMIVVELGTNPLKSSGIENGAFQGMKKLSYIRIADTNITTIP---QGLPPSLTELHLDGNKIT  184 (305)
T ss_dssp             CSSCCCBBCHHHHTTCTTCCEEECCSSCCCGGGBCTTGGGGCTTCCEEECCSSCCCSCC---SSCCTTCSEEECTTSCCC
T ss_pred             cccchhhhhhhhhhccccccccccccccccccCCCccccccccccCccccccCCccccC---cccCCccCEEECCCCcCC
Confidence            7766665545555556666666666553221  11223455666666666666554321   123456666666666555


Q ss_pred             chHHHhhhCCCCCcEEEccCCCCCHHHHHHHhcCCCCCEeecCCCCCChhHHHHhHcCCCCCeeeeCCCCCCHHHHHHH-
Q 012186          338 DGSLRKLAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLFGARITDSGAAYLRNFKNLRSLEICGGGLTDAGVKHI-  416 (469)
Q Consensus       338 ~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l-  416 (469)
                      ...+..+..++.++.|++++|.++...+..+.++++|++|++++|+++.. |.++..+++|+.|++++|+++......| 
T Consensus       185 ~~~~~~~~~~~~l~~L~~s~n~l~~~~~~~~~~l~~L~~L~L~~N~L~~l-p~~l~~l~~L~~L~Ls~N~i~~i~~~~f~  263 (305)
T d1xkua_         185 KVDAASLKGLNNLAKLGLSFNSISAVDNGSLANTPHLRELHLNNNKLVKV-PGGLADHKYIQVVYLHNNNISAIGSNDFC  263 (305)
T ss_dssp             EECTGGGTTCTTCCEEECCSSCCCEECTTTGGGSTTCCEEECCSSCCSSC-CTTTTTCSSCCEEECCSSCCCCCCTTSSS
T ss_pred             CCChhHhhccccccccccccccccccccccccccccceeeeccccccccc-ccccccccCCCEEECCCCccCccChhhcc
Confidence            55555555566666666666666655455555566666666666665543 3455556666666666665554322222 


Q ss_pred             -----hcCCCCCeeeccCC
Q 012186          417 -----KDLSSLTLLNLSQN  430 (469)
Q Consensus       417 -----~~~~~L~~L~l~~~  430 (469)
                           ...++|+.|++++|
T Consensus       264 ~~~~~~~~~~L~~L~L~~N  282 (305)
T d1xkua_         264 PPGYNTKKASYSGVSLFSN  282 (305)
T ss_dssp             CSSCCTTSCCCSEEECCSS
T ss_pred             CcchhcccCCCCEEECCCC
Confidence                 12345555555555

>d1xkua_ c.10.2.7 (A:) Decorin {Cow (Bos taurus) [TaxId: 9913]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Decorin
species: Cow (Bos taurus) [TaxId: 9913]

Probab=99.83  E-value=1.7e-20  Score=167.66  Aligned_cols=246  Identities=18%  Similarity=0.210  Sum_probs=135.3

Q ss_pred             CccEEEccCCCCCChhhhhcccCCCCCCEEEecccccChhhhhhccCCCCCCeeeccCCCCchhhHHhhhcCCCCcEEEC
Q 012186          156 KLESLNIKWCNCITDSDMKPLSGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACLDSLSALGSLFYLNL  235 (469)
Q Consensus       156 ~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l  235 (469)
                      ++++|+++++ .++......+.++++|++|++.++.+....+..+..+++|++|++++|+++....   ...+.+..|.+
T Consensus        32 ~l~~L~Ls~N-~i~~l~~~~f~~l~~L~~L~l~~n~~~~i~~~~f~~l~~L~~L~l~~n~l~~l~~---~~~~~l~~L~~  107 (305)
T d1xkua_          32 DTALLDLQNN-KITEIKDGDFKNLKNLHTLILINNKISKISPGAFAPLVKLERLYLSKNQLKELPE---KMPKTLQELRV  107 (305)
T ss_dssp             TCCEEECCSS-CCCCBCTTTTTTCTTCCEEECCSSCCCCBCTTTTTTCTTCCEEECCSSCCSBCCS---SCCTTCCEEEC
T ss_pred             CCCEEECcCC-cCCCcChhHhhccccccccccccccccccchhhhhCCCccCEecccCCccCcCcc---chhhhhhhhhc
Confidence            4555555542 2333333344455555555555555444444445555555555555554443211   12234555555


Q ss_pred             CCCCCChhHHHHhhcCCCccEEEccCCCCch--HHHHHhhCCCCCCEEecCCCCCChHHHHHhhCCCCCCEEeccCCCCC
Q 012186          236 NRCQLSDDGCEKFSKIGSLKVLNLGFNEITD--ECLVHLKGLTNLESLNLDSCGIGDEGLVNLTGLCNLKCLELSDTQVG  313 (469)
Q Consensus       236 ~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~--~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~  313 (469)
                      .++.+.......+.....+..++...+....  .....+..+++|+.+++.++.+....   ...+++|+.|++.++...
T Consensus       108 ~~n~l~~l~~~~~~~~~~~~~l~~~~n~~~~~~~~~~~~~~l~~L~~l~l~~n~l~~l~---~~~~~~L~~L~l~~n~~~  184 (305)
T d1xkua_         108 HENEITKVRKSVFNGLNQMIVVELGTNPLKSSGIENGAFQGMKKLSYIRIADTNITTIP---QGLPPSLTELHLDGNKIT  184 (305)
T ss_dssp             CSSCCCBBCHHHHTTCTTCCEEECCSSCCCGGGBCTTGGGGCTTCCEEECCSSCCCSCC---SSCCTTCSEEECTTSCCC
T ss_pred             cccchhhhhhhhhhccccccccccccccccccCCCccccccccccCccccccCCccccC---cccCCccCEEECCCCcCC
Confidence            5555544444444444555555554443221  11223455566666666666544321   113456667777666665


Q ss_pred             hhhHHHhhCCCCCcEEecccCCCCchHHHhhhCCCCCcEEEccCCCCCHHHHHHHhcCCCCCEeecCCCCCChhHHHHh-
Q 012186          314 SSGLRHLSGLTNLESINLSFTGISDGSLRKLAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLFGARITDSGAAYL-  392 (469)
Q Consensus       314 ~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~-  392 (469)
                      ...+..+..++.++.|.+++|.+....+..+..+++|++|++++|.++.. +..+..+++|++|++++|+++......+ 
T Consensus       185 ~~~~~~~~~~~~l~~L~~s~n~l~~~~~~~~~~l~~L~~L~L~~N~L~~l-p~~l~~l~~L~~L~Ls~N~i~~i~~~~f~  263 (305)
T d1xkua_         185 KVDAASLKGLNNLAKLGLSFNSISAVDNGSLANTPHLRELHLNNNKLVKV-PGGLADHKYIQVVYLHNNNISAIGSNDFC  263 (305)
T ss_dssp             EECTGGGTTCTTCCEEECCSSCCCEECTTTGGGSTTCCEEECCSSCCSSC-CTTTTTCSSCCEEECCSSCCCCCCTTSSS
T ss_pred             CCChhHhhccccccccccccccccccccccccccccceeeeccccccccc-ccccccccCCCEEECCCCccCccChhhcc
Confidence            55555666667777777777766666666666677777777777777654 3456667777777777777765433322 


Q ss_pred             -----HcCCCCCeeeeCCCCCC
Q 012186          393 -----RNFKNLRSLEICGGGLT  409 (469)
Q Consensus       393 -----~~~~~L~~L~l~~~~~~  409 (469)
                           ...++|+.|++++|.+.
T Consensus       264 ~~~~~~~~~~L~~L~L~~N~~~  285 (305)
T d1xkua_         264 PPGYNTKKASYSGVSLFSNPVQ  285 (305)
T ss_dssp             CSSCCTTSCCCSEEECCSSSSC
T ss_pred             CcchhcccCCCCEEECCCCcCc
Confidence                 34567888888888765

>d1ozna_ c.10.2.7 (A:) Reticulon 4 receptor (Nogo-66 receptor, Ngr) {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Reticulon 4 receptor (Nogo-66 receptor, Ngr)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.83  E-value=1.8e-21  Score=172.10  Aligned_cols=204  Identities=21%  Similarity=0.254  Sum_probs=173.5

Q ss_pred             CCCcEEECCCCCCChhHHHHhhcCCCccEEEccCCCCchHHHHHhhCCCCCCEEecCC-CCCChHHHHHhhCCCCCCEEe
Q 012186          228 GSLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNLDS-CGIGDEGLVNLTGLCNLKCLE  306 (469)
Q Consensus       228 ~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~-~~~~~~~~~~~~~~~~L~~L~  306 (469)
                      +++++|++++|.++...+..|..+++|+.|+++++.+.......+..++.+..+.... +.+....+..+..+++|+.|+
T Consensus        32 ~~~~~L~Ls~N~i~~i~~~~f~~l~~L~~L~ls~n~l~~i~~~~~~~~~~~~~l~~~~~~~~~~l~~~~~~~l~~L~~L~  111 (284)
T d1ozna_          32 AASQRIFLHGNRISHVPAASFRACRNLTILWLHSNVLARIDAAAFTGLALLEQLDLSDNAQLRSVDPATFHGLGRLHTLH  111 (284)
T ss_dssp             TTCSEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSCTTCCCCCTTTTTTCTTCCEEE
T ss_pred             CCCCEEECcCCcCCCCCHHHhhccccccccccccccccccccccccccccccccccccccccccccchhhcccccCCEEe
Confidence            5789999999999877767788999999999999988876666677788888887654 345555556688889999999


Q ss_pred             ccCCCCChhhHHHhhCCCCCcEEecccCCCCchHHHhhhCCCCCcEEEccCCCCCHHHHHHHhcCCCCCEeecCCCCCCh
Q 012186          307 LSDTQVGSSGLRHLSGLTNLESINLSFTGISDGSLRKLAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLFGARITD  386 (469)
Q Consensus       307 l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~  386 (469)
                      +.++.+.......+..+++|+.+++++|.+....+..+..+++|+.|++++|.++...+..+.++++|+++++++|.+++
T Consensus       112 l~~n~~~~~~~~~~~~~~~L~~l~l~~N~l~~i~~~~f~~~~~L~~L~l~~N~l~~l~~~~f~~l~~L~~l~l~~N~l~~  191 (284)
T d1ozna_         112 LDRCGLQELGPGLFRGLAALQYLYLQDNALQALPDDTFRDLGNLTHLFLHGNRISSVPERAFRGLHSLDRLLLHQNRVAH  191 (284)
T ss_dssp             CTTSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCE
T ss_pred             cCCcccccccccccchhcccchhhhccccccccChhHhccccchhhcccccCcccccchhhhccccccchhhhhhccccc
Confidence            99998776666667788899999999998888777778888999999999999988777788889999999999999998


Q ss_pred             hHHHHhHcCCCCCeeeeCCCCCCHHHHHHHhcCCCCCeeeccCCC
Q 012186          387 SGAAYLRNFKNLRSLEICGGGLTDAGVKHIKDLSSLTLLNLSQNC  431 (469)
Q Consensus       387 ~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~  431 (469)
                      ..|.++..+++|+.|++++|.+....+..|+.+++|++|++++|+
T Consensus       192 i~~~~f~~l~~L~~L~l~~N~i~~~~~~~~~~~~~L~~L~l~~N~  236 (284)
T d1ozna_         192 VHPHAFRDLGRLMTLYLFANNLSALPTEALAPLRALQYLRLNDNP  236 (284)
T ss_dssp             ECTTTTTTCTTCCEEECCSSCCSCCCHHHHTTCTTCCEEECCSSC
T ss_pred             cChhHhhhhhhcccccccccccccccccccccccccCEEEecCCC
Confidence            888889999999999999999998888888899999999999985

>d1ozna_ c.10.2.7 (A:) Reticulon 4 receptor (Nogo-66 receptor, Ngr) {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Reticulon 4 receptor (Nogo-66 receptor, Ngr)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.81  E-value=1.3e-19  Score=159.86  Aligned_cols=206  Identities=23%  Similarity=0.242  Sum_probs=137.7

Q ss_pred             CCCCEEecCCCcccChhHhHhhhCCCCCCEEeCCCCCcCcHHHHHHHhCCCCCCEEecccccccccc-cccccCCCCccE
Q 012186           81 SNLQSLDFNFCIQISDGGLEHLRGLSNLTSLSFRRNNAITAQGMKAFAGLINLVKLDLERCTRIHGG-LVNLKGLMKLES  159 (469)
Q Consensus        81 ~~L~~L~l~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~-~~~l~~l~~L~~  159 (469)
                      +++++|++++ +.++...+.+|.++++|++|+++++.+ ....+..+..+..++.+....+..+... +..+..+++|++
T Consensus        32 ~~~~~L~Ls~-N~i~~i~~~~f~~l~~L~~L~ls~n~l-~~i~~~~~~~~~~~~~l~~~~~~~~~~l~~~~~~~l~~L~~  109 (284)
T d1ozna_          32 AASQRIFLHG-NRISHVPAASFRACRNLTILWLHSNVL-ARIDAAAFTGLALLEQLDLSDNAQLRSVDPATFHGLGRLHT  109 (284)
T ss_dssp             TTCSEEECTT-SCCCEECTTTTTTCTTCCEEECCSSCC-CEECTTTTTTCTTCCEEECCSCTTCCCCCTTTTTTCTTCCE
T ss_pred             CCCCEEECcC-CcCCCCCHHHhhccccccccccccccc-cccccccccccccccccccccccccccccchhhcccccCCE
Confidence            3566666666 345555555666666666666666553 3333444555666666665443333332 345667777777


Q ss_pred             EEccCCCCCChhhhhcccCCCCCCEEEecccccChhhhhhccCCCCCCeeeccCCCCchhhHHhhhcCCCCcEEECCCCC
Q 012186          160 LNIKWCNCITDSDMKPLSGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACLDSLSALGSLFYLNLNRCQ  239 (469)
Q Consensus       160 L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~  239 (469)
                      |++.++. ........+...++|+.+++.++.++......+..+++|+.|++++|.+....+..+.++++|+.+.+.+|+
T Consensus       110 L~l~~n~-~~~~~~~~~~~~~~L~~l~l~~N~l~~i~~~~f~~~~~L~~L~l~~N~l~~l~~~~f~~l~~L~~l~l~~N~  188 (284)
T d1ozna_         110 LHLDRCG-LQELGPGLFRGLAALQYLYLQDNALQALPDDTFRDLGNLTHLFLHGNRISSVPERAFRGLHSLDRLLLHQNR  188 (284)
T ss_dssp             EECTTSC-CCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSC
T ss_pred             EecCCcc-cccccccccchhcccchhhhccccccccChhHhccccchhhcccccCcccccchhhhccccccchhhhhhcc
Confidence            7777643 333344555667777777777777776666667777778888888777776666677777888888888887


Q ss_pred             CChhHHHHhhcCCCccEEEccCCCCchHHHHHhhCCCCCCEEecCCCCCC
Q 012186          240 LSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNLDSCGIG  289 (469)
Q Consensus       240 ~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~  289 (469)
                      +....+..|..+++|+.|++++|.+....+..+..+++|++|++++|.+.
T Consensus       189 l~~i~~~~f~~l~~L~~L~l~~N~i~~~~~~~~~~~~~L~~L~l~~N~l~  238 (284)
T d1ozna_         189 VAHVHPHAFRDLGRLMTLYLFANNLSALPTEALAPLRALQYLRLNDNPWV  238 (284)
T ss_dssp             CCEECTTTTTTCTTCCEEECCSSCCSCCCHHHHTTCTTCCEEECCSSCEE
T ss_pred             ccccChhHhhhhhhcccccccccccccccccccccccccCEEEecCCCCC
Confidence            77766677777788888888888877766777777888888888777543

>d2astb2 c.10.1.3 (B:2136-2419) Cyclin A/CDK2-associated p19, Skp2 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: Cyclin A/CDK2-associated p19, Skp2
domain: Cyclin A/CDK2-associated p19, Skp2
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.80  E-value=1.4e-18  Score=152.70  Aligned_cols=249  Identities=18%  Similarity=0.216  Sum_probs=175.9

Q ss_pred             CeeeccCCCCchhhHHhhhcCCCCcEEECCCCCCChhHHHHhhcCCCccEEEccCCCCchHH-HHHhhCCCCCCEEecCC
Q 012186          207 TLLNLEGCPVTAACLDSLSALGSLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDEC-LVHLKGLTNLESLNLDS  285 (469)
Q Consensus       207 ~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~-~~~~~~l~~L~~L~l~~  285 (469)
                      ++++++++.+.......+.. .....+.+......... .......+|++|+++++.+.... ...+..+++|++|.+++
T Consensus         3 ~~lDLs~~~l~~~~l~~l~~-~~~~~lrl~~~~~~~~~-~~~~~~~~L~~LdLs~~~i~~~~l~~l~~~c~~L~~L~L~~   80 (284)
T d2astb2           3 QTLDLTGKNLHPDVTGRLLS-QGVIAFRCPRSFMDQPL-AEHFSPFRVQHMDLSNSVIEVSTLHGILSQCSKLQNLSLEG   80 (284)
T ss_dssp             SEEECTTCBCCHHHHHHHHH-TTCSEEECTTCEECSCC-CSCCCCBCCCEEECTTCEECHHHHHHHHTTBCCCSEEECTT
T ss_pred             CEEECCCCCCCchHHHHHHh-ccceEeeccccccccch-hhhccCCCCCEEECCCCccCHHHHHHHHHhCCCcccccccc
Confidence            46888887665433332222 23445555544332211 12234568999999998877554 44567899999999999


Q ss_pred             CCCChHHHHHhhCCCCCCEEeccCC-CCChhhHHH-hhCCCCCcEEecccC-CCCchHHH-hhh-CCCCCcEEEccCC--
Q 012186          286 CGIGDEGLVNLTGLCNLKCLELSDT-QVGSSGLRH-LSGLTNLESINLSFT-GISDGSLR-KLA-GLSSLKSLNLDAR--  358 (469)
Q Consensus       286 ~~~~~~~~~~~~~~~~L~~L~l~~~-~~~~~~~~~-~~~~~~L~~L~l~~~-~~~~~~~~-~~~-~~~~L~~L~l~~~--  358 (469)
                      |.+.+.....++.+++|++|++++| .+++..... ...+++|++|++++| .+++.... .+. .+++|+.|+++++  
T Consensus        81 ~~l~~~~~~~l~~~~~L~~L~Ls~c~~itd~~l~~l~~~~~~L~~L~ls~c~~~~~~~~~~~~~~~~~~L~~L~l~~~~~  160 (284)
T d2astb2          81 LRLSDPIVNTLAKNSNLVRLNLSGCSGFSEFALQTLLSSCSRLDELNLSWCFDFTEKHVQVAVAHVSETITQLNLSGYRK  160 (284)
T ss_dssp             CBCCHHHHHHHTTCTTCSEEECTTCBSCCHHHHHHHHHHCTTCCEEECCCCTTCCHHHHHHHHHHSCTTCCEEECCSCGG
T ss_pred             cCCCcHHHHHHhcCCCCcCccccccccccccccchhhHHHHhccccccccccccccccchhhhcccccccchhhhccccc
Confidence            9988888888889999999999996 566555444 357899999999997 55554432 333 3578999999974  


Q ss_pred             CCCHHHHHHH-hcCCCCCEeecCCC-CCChhHHHHhHcCCCCCeeeeCCC-CCCHHHHHHHhcCCCCCeeeccCCCCCCh
Q 012186          359 QITDTGLAAL-TSLTGLTHLDLFGA-RITDSGAAYLRNFKNLRSLEICGG-GLTDAGVKHIKDLSSLTLLNLSQNCNLTD  435 (469)
Q Consensus       359 ~~~~~~~~~l-~~~~~L~~L~l~~~-~~~~~~~~~~~~~~~L~~L~l~~~-~~~~~~~~~l~~~~~L~~L~l~~~~~l~~  435 (469)
                      .++......+ ..+|+|++|++++| .+++.....+..+++|+.|++++| .+++..+..++++++|+.|++++| .-..
T Consensus       161 ~i~~~~l~~l~~~~~~L~~L~L~~~~~itd~~~~~l~~~~~L~~L~L~~C~~i~~~~l~~L~~~~~L~~L~l~~~-~~d~  239 (284)
T d2astb2         161 NLQKSDLSTLVRRCPNLVHLDLSDSVMLKNDCFQEFFQLNYLQHLSLSRCYDIIPETLLELGEIPTLKTLQVFGI-VPDG  239 (284)
T ss_dssp             GSCHHHHHHHHHHCTTCSEEECTTCTTCCGGGGGGGGGCTTCCEEECTTCTTCCGGGGGGGGGCTTCCEEECTTS-SCTT
T ss_pred             ccccccccccccccccccccccccccCCCchhhhhhcccCcCCEEECCCCCCCChHHHHHHhcCCCCCEEeeeCC-CCHH
Confidence            5666555444 57899999999987 577777788889999999999996 688777777888999999999998 3333


Q ss_pred             hHHHHHHhCcccccccccCCCCCHHH
Q 012186          436 KTLELISGLTGLVSLNVSNSRITSAG  461 (469)
Q Consensus       436 ~~~~~l~~l~~L~~L~l~~~~~~~~~  461 (469)
                      ........+|+|+   +..++++..+
T Consensus       240 ~l~~l~~~lp~L~---i~~~~ls~~~  262 (284)
T d2astb2         240 TLQLLKEALPHLQ---INCSHFTTIA  262 (284)
T ss_dssp             CHHHHHHHSTTSE---ESCCCSCCTT
T ss_pred             HHHHHHHhCcccc---ccCccCCCCC
Confidence            3333334566554   5666766544

>d2astb2 c.10.1.3 (B:2136-2419) Cyclin A/CDK2-associated p19, Skp2 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: Cyclin A/CDK2-associated p19, Skp2
domain: Cyclin A/CDK2-associated p19, Skp2
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.78  E-value=6.9e-18  Score=148.15  Aligned_cols=249  Identities=18%  Similarity=0.216  Sum_probs=173.4

Q ss_pred             CEEEecccccChhhhhhccCCCCCCeeeccCCCCchhhHHhhhcCCCCcEEECCCCCCChhHH-HHhhcCCCccEEEccC
Q 012186          183 KSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACLDSLSALGSLFYLNLNRCQLSDDGC-EKFSKIGSLKVLNLGF  261 (469)
Q Consensus       183 ~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~-~~~~~~~~L~~L~l~~  261 (469)
                      ++++++++.+.......+.. ..+..+.+........ ........+|++|+++++.+..... ..+..+++|++|++++
T Consensus         3 ~~lDLs~~~l~~~~l~~l~~-~~~~~lrl~~~~~~~~-~~~~~~~~~L~~LdLs~~~i~~~~l~~l~~~c~~L~~L~L~~   80 (284)
T d2astb2           3 QTLDLTGKNLHPDVTGRLLS-QGVIAFRCPRSFMDQP-LAEHFSPFRVQHMDLSNSVIEVSTLHGILSQCSKLQNLSLEG   80 (284)
T ss_dssp             SEEECTTCBCCHHHHHHHHH-TTCSEEECTTCEECSC-CCSCCCCBCCCEEECTTCEECHHHHHHHHTTBCCCSEEECTT
T ss_pred             CEEECCCCCCCchHHHHHHh-ccceEeeccccccccc-hhhhccCCCCCEEECCCCccCHHHHHHHHHhCCCcccccccc
Confidence            47888877776544433322 2344555554432221 1122345689999999988876654 3457889999999999


Q ss_pred             CCCchHHHHHhhCCCCCCEEecCCC-CCChHHHHHh-hCCCCCCEEeccCC-CCChhhH-HHhh-CCCCCcEEecccC--
Q 012186          262 NEITDECLVHLKGLTNLESLNLDSC-GIGDEGLVNL-TGLCNLKCLELSDT-QVGSSGL-RHLS-GLTNLESINLSFT--  334 (469)
Q Consensus       262 ~~~~~~~~~~~~~l~~L~~L~l~~~-~~~~~~~~~~-~~~~~L~~L~l~~~-~~~~~~~-~~~~-~~~~L~~L~l~~~--  334 (469)
                      +.+++.....+..+++|++|++++| .+++.....+ ..+++|++|++++| .+..... ..+. .++.|+.|.++++  
T Consensus        81 ~~l~~~~~~~l~~~~~L~~L~Ls~c~~itd~~l~~l~~~~~~L~~L~ls~c~~~~~~~~~~~~~~~~~~L~~L~l~~~~~  160 (284)
T d2astb2          81 LRLSDPIVNTLAKNSNLVRLNLSGCSGFSEFALQTLLSSCSRLDELNLSWCFDFTEKHVQVAVAHVSETITQLNLSGYRK  160 (284)
T ss_dssp             CBCCHHHHHHHTTCTTCSEEECTTCBSCCHHHHHHHHHHCTTCCEEECCCCTTCCHHHHHHHHHHSCTTCCEEECCSCGG
T ss_pred             cCCCcHHHHHHhcCCCCcCccccccccccccccchhhHHHHhccccccccccccccccchhhhcccccccchhhhccccc
Confidence            9988888888888999999999986 5766555444 46899999999987 3444332 2233 4678999999876  


Q ss_pred             CCCchHHHhh-hCCCCCcEEEccCC-CCCHHHHHHHhcCCCCCEeecCCC-CCChhHHHHhHcCCCCCeeeeCCCCCCHH
Q 012186          335 GISDGSLRKL-AGLSSLKSLNLDAR-QITDTGLAALTSLTGLTHLDLFGA-RITDSGAAYLRNFKNLRSLEICGGGLTDA  411 (469)
Q Consensus       335 ~~~~~~~~~~-~~~~~L~~L~l~~~-~~~~~~~~~l~~~~~L~~L~l~~~-~~~~~~~~~~~~~~~L~~L~l~~~~~~~~  411 (469)
                      .+++.....+ ..+|+|++|++++| .++...+..+..+++|++|++++| .+++.....+.++++|+.|++++| +++.
T Consensus       161 ~i~~~~l~~l~~~~~~L~~L~L~~~~~itd~~~~~l~~~~~L~~L~L~~C~~i~~~~l~~L~~~~~L~~L~l~~~-~~d~  239 (284)
T d2astb2         161 NLQKSDLSTLVRRCPNLVHLDLSDSVMLKNDCFQEFFQLNYLQHLSLSRCYDIIPETLLELGEIPTLKTLQVFGI-VPDG  239 (284)
T ss_dssp             GSCHHHHHHHHHHCTTCSEEECTTCTTCCGGGGGGGGGCTTCCEEECTTCTTCCGGGGGGGGGCTTCCEEECTTS-SCTT
T ss_pred             ccccccccccccccccccccccccccCCCchhhhhhcccCcCCEEECCCCCCCChHHHHHHhcCCCCCEEeeeCC-CCHH
Confidence            4665555444 46899999999885 577777778889999999999996 677777777888999999999988 4443


Q ss_pred             HHHHH-hcCCCCCeeeccCCCCCChhHH
Q 012186          412 GVKHI-KDLSSLTLLNLSQNCNLTDKTL  438 (469)
Q Consensus       412 ~~~~l-~~~~~L~~L~l~~~~~l~~~~~  438 (469)
                      ....+ ..+|+|+   +..+ .++...+
T Consensus       240 ~l~~l~~~lp~L~---i~~~-~ls~~~~  263 (284)
T d2astb2         240 TLQLLKEALPHLQ---INCS-HFTTIAR  263 (284)
T ss_dssp             CHHHHHHHSTTSE---ESCC-CSCCTTC
T ss_pred             HHHHHHHhCcccc---ccCc-cCCCCCC
Confidence            33333 4577765   3333 5555443

>d1p9ag_ c.10.2.7 (G:) von Willebrand factor binding domain of glycoprotein Ib alpha {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: von Willebrand factor binding domain of glycoprotein Ib alpha
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.76  E-value=6.5e-20  Score=160.01  Aligned_cols=201  Identities=24%  Similarity=0.218  Sum_probs=162.1

Q ss_pred             cCCCCcEEECCCCCCChhHHHHhhcCCCccEEEccCCCCchHHHHHhhCCCCCCEEecCCCCCChHHHHHhhCCCCCCEE
Q 012186          226 ALGSLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNLDSCGIGDEGLVNLTGLCNLKCL  305 (469)
Q Consensus       226 ~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L  305 (469)
                      ....+.+++.+++.++.. |..+  .++++.|++++|.++...+..|..+++|++|++++|.++...  .++.+++|+.|
T Consensus         8 ~~~~~~~v~C~~~~L~~i-P~~l--p~~l~~L~Ls~N~i~~l~~~~f~~l~~L~~L~L~~N~l~~l~--~~~~l~~L~~L   82 (266)
T d1p9ag_           8 KVASHLEVNCDKRNLTAL-PPDL--PKDTTILHLSENLLYTFSLATLMPYTRLTQLNLDRAELTKLQ--VDGTLPVLGTL   82 (266)
T ss_dssp             CSTTCCEEECTTSCCSSC-CSCC--CTTCCEEECTTSCCSEEEGGGGTTCTTCCEEECTTSCCCEEE--CCSCCTTCCEE
T ss_pred             ccCCCeEEEccCCCCCee-CcCc--CcCCCEEECcCCcCCCcCHHHhhccccccccccccccccccc--ccccccccccc
Confidence            345566777777777652 3323  257999999999998766677889999999999999887532  45678999999


Q ss_pred             eccCCCCChhhHHHhhCCCCCcEEecccCCCCchHHHhhhCCCCCcEEEccCCCCCHHHHHHHhcCCCCCEeecCCCCCC
Q 012186          306 ELSDTQVGSSGLRHLSGLTNLESINLSFTGISDGSLRKLAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLFGARIT  385 (469)
Q Consensus       306 ~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~  385 (469)
                      ++++|.+... +..+..+++|+.|+++++.+.......+..+++++.|.+++|.++......+..+++++.+++++|+++
T Consensus        83 ~Ls~N~l~~~-~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~l~~L~l~~n~l~~l~~~~~~~l~~l~~l~l~~N~l~  161 (266)
T d1p9ag_          83 DLSHNQLQSL-PLLGQTLPALTVLDVSFNRLTSLPLGALRGLGELQELYLKGNELKTLPPGLLTPTPKLEKLSLANNNLT  161 (266)
T ss_dssp             ECCSSCCSSC-CCCTTTCTTCCEEECCSSCCCCCCSSTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECTTSCCS
T ss_pred             cccccccccc-ccccccccccccccccccccceeeccccccccccccccccccccceeccccccccccchhccccccccc
Confidence            9999987653 335678899999999999887766667778899999999999888876777778899999999999999


Q ss_pred             hhHHHHhHcCCCCCeeeeCCCCCCHHHHHHHhcCCCCCeeeccCCCCC
Q 012186          386 DSGAAYLRNFKNLRSLEICGGGLTDAGVKHIKDLSSLTLLNLSQNCNL  433 (469)
Q Consensus       386 ~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~l  433 (469)
                      +..+..+..+++|+.|++++|+++.. |..+..+++|+.|++++|+..
T Consensus       162 ~~~~~~~~~l~~L~~L~Ls~N~L~~l-p~~~~~~~~L~~L~L~~Np~~  208 (266)
T d1p9ag_         162 ELPAGLLNGLENLDTLLLQENSLYTI-PKGFFGSHLLPFAFLHGNPWL  208 (266)
T ss_dssp             CCCTTTTTTCTTCCEEECCSSCCCCC-CTTTTTTCCCSEEECCSCCBC
T ss_pred             ccCccccccccccceeecccCCCccc-ChhHCCCCCCCEEEecCCCCC
Confidence            88888888899999999999999854 666777899999999998643

>d1p9ag_ c.10.2.7 (G:) von Willebrand factor binding domain of glycoprotein Ib alpha {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: von Willebrand factor binding domain of glycoprotein Ib alpha
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.74  E-value=7.2e-19  Score=153.31  Aligned_cols=198  Identities=20%  Similarity=0.190  Sum_probs=98.9

Q ss_pred             CCCCCCEEEecccccChhhhhhccCCCCCCeeeccCCCCchhhHHhhhcCCCCcEEECCCCCCChhHHHHhhcCCCccEE
Q 012186          178 GLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACLDSLSALGSLFYLNLNRCQLSDDGCEKFSKIGSLKVL  257 (469)
Q Consensus       178 ~~~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L  257 (469)
                      ....+.+++.+++.++..+ ..+  .+++++|++++|.+....+..|..+++|++|++++|.++...  .++.+++|+.|
T Consensus         8 ~~~~~~~v~C~~~~L~~iP-~~l--p~~l~~L~Ls~N~i~~l~~~~f~~l~~L~~L~L~~N~l~~l~--~~~~l~~L~~L   82 (266)
T d1p9ag_           8 KVASHLEVNCDKRNLTALP-PDL--PKDTTILHLSENLLYTFSLATLMPYTRLTQLNLDRAELTKLQ--VDGTLPVLGTL   82 (266)
T ss_dssp             CSTTCCEEECTTSCCSSCC-SCC--CTTCCEEECTTSCCSEEEGGGGTTCTTCCEEECTTSCCCEEE--CCSCCTTCCEE
T ss_pred             ccCCCeEEEccCCCCCeeC-cCc--CcCCCEEECcCCcCCCcCHHHhhccccccccccccccccccc--ccccccccccc
Confidence            3445555666666665432 222  145677777777666655556666777777777776665421  23455666666


Q ss_pred             EccCCCCchHHHHHhhCCCCCCEEecCCCCCChHHHHHhhCCCCCCEEeccCCCCChhhHHHhhCCCCCcEEecccCCCC
Q 012186          258 NLGFNEITDECLVHLKGLTNLESLNLDSCGIGDEGLVNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSFTGIS  337 (469)
Q Consensus       258 ~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~  337 (469)
                      ++++|.+... +..+..+++|+.|+++++.+.......+..+.+++.|.+.+|.+.......+..+++++.+++++|.+.
T Consensus        83 ~Ls~N~l~~~-~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~l~~L~l~~n~l~~l~~~~~~~l~~l~~l~l~~N~l~  161 (266)
T d1p9ag_          83 DLSHNQLQSL-PLLGQTLPALTVLDVSFNRLTSLPLGALRGLGELQELYLKGNELKTLPPGLLTPTPKLEKLSLANNNLT  161 (266)
T ss_dssp             ECCSSCCSSC-CCCTTTCTTCCEEECCSSCCCCCCSSTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECTTSCCS
T ss_pred             cccccccccc-ccccccccccccccccccccceeeccccccccccccccccccccceeccccccccccchhccccccccc
Confidence            6666655432 223445555555555555444333333344445555555555444433333344444444444444444


Q ss_pred             chHHHhhhCCCCCcEEEccCCCCCHHHHHHHhcCCCCCEeecCCC
Q 012186          338 DGSLRKLAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLFGA  382 (469)
Q Consensus       338 ~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~  382 (469)
                      ...+..+..+++|+.|++++|.++.. +..+..+++|+.|++++|
T Consensus       162 ~~~~~~~~~l~~L~~L~Ls~N~L~~l-p~~~~~~~~L~~L~L~~N  205 (266)
T d1p9ag_         162 ELPAGLLNGLENLDTLLLQENSLYTI-PKGFFGSHLLPFAFLHGN  205 (266)
T ss_dssp             CCCTTTTTTCTTCCEEECCSSCCCCC-CTTTTTTCCCSEEECCSC
T ss_pred             ccCccccccccccceeecccCCCccc-ChhHCCCCCCCEEEecCC
Confidence            43333344444444444444444422 222223444444444444

>d2ca6a1 c.10.1.2 (A:2-345) Rna1p (RanGAP1), N-terminal domain {Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: Rna1p (RanGAP1), N-terminal domain
domain: Rna1p (RanGAP1), N-terminal domain
species: Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]

Probab=99.71  E-value=1e-15  Score=138.65  Aligned_cols=250  Identities=19%  Similarity=0.233  Sum_probs=132.5

Q ss_pred             hccCCCCCCeeeccCCCCchhhHH----hhhcCCCCcEEECCCCCCCh---h-------HHHHhhcCCCccEEEccCCCC
Q 012186          199 YLKGLQKLTLLNLEGCPVTAACLD----SLSALGSLFYLNLNRCQLSD---D-------GCEKFSKIGSLKVLNLGFNEI  264 (469)
Q Consensus       199 ~l~~l~~L~~L~l~~~~~~~~~~~----~~~~~~~L~~L~l~~~~~~~---~-------~~~~~~~~~~L~~L~l~~~~~  264 (469)
                      .+.....|+.|++++|.+......    .+...++|+.+++.++....   .       ....+...++|+.|++++|.+
T Consensus        26 ~L~~~~~l~~L~Ls~n~i~~~~~~~l~~~l~~~~~L~~l~l~~~~~~~~~~~~~~~~~~l~~~l~~~~~L~~L~L~~n~i  105 (344)
T d2ca6a1          26 VLLEDDSVKEIVLSGNTIGTEAARWLSENIASKKDLEIAEFSDIFTGRVKDEIPEALRLLLQALLKCPKLHTVRLSDNAF  105 (344)
T ss_dssp             HHHHCSCCCEEECTTSEECHHHHHHHHHTTTTCTTCCEEECCSCCTTSCGGGSHHHHHHHHHHHTTCTTCCEEECCSCCC
T ss_pred             HHhhCCCCCEEECcCCcCCHHHHHHHHHHHHhCCCCCEEECCCCcccccccccchHHHHHHHHHhhCCCccccccccccc
Confidence            445567777777777766543322    34455677777776554221   1       112234455666666666555


Q ss_pred             chH----HHHHhhCCCCCCEEecCCCCCChHHHHHhhCCCCCCEEeccCCCCChhhHHHhhCCCCCcEEecccCCCCchH
Q 012186          265 TDE----CLVHLKGLTNLESLNLDSCGIGDEGLVNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISDGS  340 (469)
Q Consensus       265 ~~~----~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~  340 (469)
                      ...    ....+...++|+.|++++|.+.......++..  +..         ..........+.|+.+.++++.+.+..
T Consensus       106 ~~~~~~~l~~~l~~~~~L~~L~l~~n~l~~~~~~~l~~~--l~~---------~~~~~~~~~~~~L~~l~l~~n~i~~~~  174 (344)
T d2ca6a1         106 GPTAQEPLIDFLSKHTPLEHLYLHNNGLGPQAGAKIARA--LQE---------LAVNKKAKNAPPLRSIICGRNRLENGS  174 (344)
T ss_dssp             CTTTHHHHHHHHHHCTTCCEEECCSSCCHHHHHHHHHHH--HHH---------HHHHHHHHTCCCCCEEECCSSCCTGGG
T ss_pred             ccccccchhhhhcccccchheeccccccccccccccccc--ccc---------cccccccccCcccceeecccccccccc
Confidence            432    22233445566666666655543222221100  000         000001124556666666666555443


Q ss_pred             HHh----hhCCCCCcEEEccCCCCCHHHHH-----HHhcCCCCCEeecCCCCCChhH----HHHhHcCCCCCeeeeCCCC
Q 012186          341 LRK----LAGLSSLKSLNLDARQITDTGLA-----ALTSLTGLTHLDLFGARITDSG----AAYLRNFKNLRSLEICGGG  407 (469)
Q Consensus       341 ~~~----~~~~~~L~~L~l~~~~~~~~~~~-----~l~~~~~L~~L~l~~~~~~~~~----~~~~~~~~~L~~L~l~~~~  407 (469)
                      ...    +..++.|+.|++++|.++..+..     .+..+++|+.|++++|.++...    ...+..++.|+.|++++|.
T Consensus       175 ~~~l~~~l~~~~~L~~L~L~~n~i~~~g~~~~l~~~l~~~~~L~~L~Ls~N~i~~~g~~~L~~~l~~~~~L~~L~Ls~n~  254 (344)
T d2ca6a1         175 MKEWAKTFQSHRLLHTVKMVQNGIRPEGIEHLLLEGLAYCQELKVLDLQDNTFTHLGSSALAIALKSWPNLRELGLNDCL  254 (344)
T ss_dssp             HHHHHHHHHHCTTCCEEECCSSCCCHHHHHHHHHTTGGGCTTCCEEECCSSCCHHHHHHHHHHHGGGCTTCCEEECTTCC
T ss_pred             cccccchhhhhhhhcccccccccccccccccchhhhhcchhhhcccccccccccccccccccccccccccchhhhhhcCc
Confidence            322    33456677777766666654321     2345666777777777665443    2344566777777777777


Q ss_pred             CCHHHHHHHh------cCCCCCeeeccCCCCCChhHHHHHH-----hCcccccccccCCCCCHH
Q 012186          408 LTDAGVKHIK------DLSSLTLLNLSQNCNLTDKTLELIS-----GLTGLVSLNVSNSRITSA  460 (469)
Q Consensus       408 ~~~~~~~~l~------~~~~L~~L~l~~~~~l~~~~~~~l~-----~l~~L~~L~l~~~~~~~~  460 (469)
                      +.+.+...+.      ..+.|++|++++| .++......+.     ++++|+.|++++|++.++
T Consensus       255 i~~~g~~~l~~~l~~~~~~~L~~L~ls~N-~i~~~~~~~l~~~l~~~~~~L~~L~l~~N~~~~~  317 (344)
T d2ca6a1         255 LSARGAAAVVDAFSKLENIGLQTLRLQYN-EIELDAVRTLKTVIDEKMPDLLFLELNGNRFSEE  317 (344)
T ss_dssp             CCHHHHHHHHHHHHTCSSCCCCEEECCSS-CCBHHHHHHHHHHHHHHCTTCCEEECTTSBSCTT
T ss_pred             cCchhhHHHHHHhhhccCCCCCEEECCCC-cCChHHHHHHHHHHHccCCCCCEEECCCCcCCCc
Confidence            7765544442      2356777777777 56655433332     456777777777777553

>d1h6ua2 c.10.2.1 (A:36-262) Internalin H {Listeria monocytogenes [TaxId: 1639]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin H
species: Listeria monocytogenes [TaxId: 1639]

Probab=99.69  E-value=4.3e-17  Score=138.38  Aligned_cols=187  Identities=28%  Similarity=0.383  Sum_probs=92.6

Q ss_pred             cCCCCcEEECCCCCCChhHHHHhhcCCCccEEEccCCCCchHHHHHhhCCCCCCEEecCCCCCChHHHHHhhCCCCCCEE
Q 012186          226 ALGSLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNLDSCGIGDEGLVNLTGLCNLKCL  305 (469)
Q Consensus       226 ~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L  305 (469)
                      .+.+|+.|++.+|.+...  ..+..+++|+.|++++|.+.+..  .+..+++++.+.++++.++..  ..+..+++|+.+
T Consensus        39 ~l~~L~~L~l~~~~i~~l--~~l~~l~~L~~L~ls~n~i~~~~--~l~~l~~l~~l~~~~n~~~~i--~~l~~l~~L~~l  112 (227)
T d1h6ua2          39 DLDGITTLSAFGTGVTTI--EGVQYLNNLIGLELKDNQITDLA--PLKNLTKITELELSGNPLKNV--SAIAGLQSIKTL  112 (227)
T ss_dssp             HHHTCCEEECTTSCCCCC--TTGGGCTTCCEEECCSSCCCCCG--GGTTCCSCCEEECCSCCCSCC--GGGTTCTTCCEE
T ss_pred             HcCCcCEEECCCCCCCcc--hhHhcCCCCcEeecCCceeeccc--ccccccccccccccccccccc--cccccccccccc
Confidence            345566666666655432  23555666666666665554322  245555555555555544321  234445555555


Q ss_pred             eccCCCCChhhHHHhhCCCCCcEEecccCCCCchHHHhhhCCCCCcEEEccCCCCCHHHHHHHhcCCCCCEeecCCCCCC
Q 012186          306 ELSDTQVGSSGLRHLSGLTNLESINLSFTGISDGSLRKLAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLFGARIT  385 (469)
Q Consensus       306 ~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~  385 (469)
                      .+.++.....  ..+...                        +.++.+.++.+.+...  ..+..+++|+.|++.+|.+.
T Consensus       113 ~l~~~~~~~~--~~~~~~------------------------~~~~~l~~~~~~~~~~--~~~~~~~~L~~L~l~~n~~~  164 (227)
T d1h6ua2         113 DLTSTQITDV--TPLAGL------------------------SNLQVLYLDLNQITNI--SPLAGLTNLQYLSIGNAQVS  164 (227)
T ss_dssp             ECTTSCCCCC--GGGTTC------------------------TTCCEEECCSSCCCCC--GGGGGCTTCCEEECCSSCCC
T ss_pred             cccccccccc--chhccc------------------------cchhhhhchhhhhchh--hhhccccccccccccccccc
Confidence            5544433321  112333                        4444455544444332  12334555555555555544


Q ss_pred             hhHHHHhHcCCCCCeeeeCCCCCCHHHHHHHhcCCCCCeeeccCCCCCChhHHHHHHhCccccccccc
Q 012186          386 DSGAAYLRNFKNLRSLEICGGGLTDAGVKHIKDLSSLTLLNLSQNCNLTDKTLELISGLTGLVSLNVS  453 (469)
Q Consensus       386 ~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~l~~~~~~~l~~l~~L~~L~l~  453 (469)
                      +..  .+.++++|+.|++++|++++..  .+.++++|++|++++| +++...+  ++++++|+.|+++
T Consensus       165 ~~~--~l~~l~~L~~L~Ls~n~l~~l~--~l~~l~~L~~L~Ls~N-~lt~i~~--l~~l~~L~~L~ls  225 (227)
T d1h6ua2         165 DLT--PLANLSKLTTLKADDNKISDIS--PLASLPNLIEVHLKNN-QISDVSP--LANTSNLFIVTLT  225 (227)
T ss_dssp             CCG--GGTTCTTCCEEECCSSCCCCCG--GGGGCTTCCEEECTTS-CCCBCGG--GTTCTTCCEEEEE
T ss_pred             cch--hhcccccceecccCCCccCCCh--hhcCCCCCCEEECcCC-cCCCCcc--cccCCCCCEEEee
Confidence            322  2445555555555555555432  2455566666666666 4555433  5556666666554

>d1h6ua2 c.10.2.1 (A:36-262) Internalin H {Listeria monocytogenes [TaxId: 1639]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin H
species: Listeria monocytogenes [TaxId: 1639]

Probab=99.68  E-value=1.3e-16  Score=135.40  Aligned_cols=190  Identities=31%  Similarity=0.407  Sum_probs=141.1

Q ss_pred             hccCCCCCCeeeccCCCCchhhHHhhhcCCCCcEEECCCCCCChhHHHHhhcCCCccEEEccCCCCchHHHHHhhCCCCC
Q 012186          199 YLKGLQKLTLLNLEGCPVTAACLDSLSALGSLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNL  278 (469)
Q Consensus       199 ~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L  278 (469)
                      .+..+.+|+.|++.++.++..  ..+..+++|+.|++++|.+....  .+..+++++.++++++.++..  ..+..+++|
T Consensus        36 ~~~~l~~L~~L~l~~~~i~~l--~~l~~l~~L~~L~ls~n~i~~~~--~l~~l~~l~~l~~~~n~~~~i--~~l~~l~~L  109 (227)
T d1h6ua2          36 TQADLDGITTLSAFGTGVTTI--EGVQYLNNLIGLELKDNQITDLA--PLKNLTKITELELSGNPLKNV--SAIAGLQSI  109 (227)
T ss_dssp             CHHHHHTCCEEECTTSCCCCC--TTGGGCTTCCEEECCSSCCCCCG--GGTTCCSCCEEECCSCCCSCC--GGGTTCTTC
T ss_pred             CHHHcCCcCEEECCCCCCCcc--hhHhcCCCCcEeecCCceeeccc--ccccccccccccccccccccc--ccccccccc
Confidence            345678899999999998874  46889999999999999987643  378899999999999987753  357889999


Q ss_pred             CEEecCCCCCChHHHHHhhCCCCCCEEeccCCCCChhhHHHhhCCCCCcEEecccCCCCchHHHhhhCCCCCcEEEccCC
Q 012186          279 ESLNLDSCGIGDEGLVNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISDGSLRKLAGLSSLKSLNLDAR  358 (469)
Q Consensus       279 ~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~  358 (469)
                      +.+.++++.....  ..+...+.+..+.+.++.+....  .+..+++|+.|.+++|.+.+..  .+.++++|+.|++++|
T Consensus       110 ~~l~l~~~~~~~~--~~~~~~~~~~~l~~~~~~~~~~~--~~~~~~~L~~L~l~~n~~~~~~--~l~~l~~L~~L~Ls~n  183 (227)
T d1h6ua2         110 KTLDLTSTQITDV--TPLAGLSNLQVLYLDLNQITNIS--PLAGLTNLQYLSIGNAQVSDLT--PLANLSKLTTLKADDN  183 (227)
T ss_dssp             CEEECTTSCCCCC--GGGTTCTTCCEEECCSSCCCCCG--GGGGCTTCCEEECCSSCCCCCG--GGTTCTTCCEEECCSS
T ss_pred             ccccccccccccc--chhccccchhhhhchhhhhchhh--hhccccccccccccccccccch--hhcccccceecccCCC
Confidence            9999998876543  34567789999999888765533  3567788888888888776533  3666777777777777


Q ss_pred             CCCHHHHHHHhcCCCCCEeecCCCCCChhHHHHhHcCCCCCeeeeC
Q 012186          359 QITDTGLAALTSLTGLTHLDLFGARITDSGAAYLRNFKNLRSLEIC  404 (469)
Q Consensus       359 ~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~  404 (469)
                      +++..  ..+.++++|++|++++|++++..  .+.++++|+.|+++
T Consensus       184 ~l~~l--~~l~~l~~L~~L~Ls~N~lt~i~--~l~~l~~L~~L~ls  225 (227)
T d1h6ua2         184 KISDI--SPLASLPNLIEVHLKNNQISDVS--PLANTSNLFIVTLT  225 (227)
T ss_dssp             CCCCC--GGGGGCTTCCEEECTTSCCCBCG--GGTTCTTCCEEEEE
T ss_pred             ccCCC--hhhcCCCCCCEEECcCCcCCCCc--ccccCCCCCEEEee
Confidence            77653  23566677777777777666543  25566666666664

>d2ca6a1 c.10.1.2 (A:2-345) Rna1p (RanGAP1), N-terminal domain {Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: Rna1p (RanGAP1), N-terminal domain
domain: Rna1p (RanGAP1), N-terminal domain
species: Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]

Probab=99.68  E-value=4.5e-15  Score=134.33  Aligned_cols=249  Identities=18%  Similarity=0.209  Sum_probs=154.3

Q ss_pred             hcccCCCCCCEEEecccccChhhhh----hccCCCCCCeeeccCCCCch----------hhHHhhhcCCCCcEEECCCCC
Q 012186          174 KPLSGLTNLKSLQISCSKVTDSGIA----YLKGLQKLTLLNLEGCPVTA----------ACLDSLSALGSLFYLNLNRCQ  239 (469)
Q Consensus       174 ~~~~~~~~L~~L~l~~~~~~~~~~~----~l~~l~~L~~L~l~~~~~~~----------~~~~~~~~~~~L~~L~l~~~~  239 (469)
                      ..+....+++.|++++|.+......    .+...++|+.++++++....          .....+..+++|+.|++++|.
T Consensus        25 ~~L~~~~~l~~L~Ls~n~i~~~~~~~l~~~l~~~~~L~~l~l~~~~~~~~~~~~~~~~~~l~~~l~~~~~L~~L~L~~n~  104 (344)
T d2ca6a1          25 AVLLEDDSVKEIVLSGNTIGTEAARWLSENIASKKDLEIAEFSDIFTGRVKDEIPEALRLLLQALLKCPKLHTVRLSDNA  104 (344)
T ss_dssp             HHHHHCSCCCEEECTTSEECHHHHHHHHHTTTTCTTCCEEECCSCCTTSCGGGSHHHHHHHHHHHTTCTTCCEEECCSCC
T ss_pred             HHHhhCCCCCEEECcCCcCCHHHHHHHHHHHHhCCCCCEEECCCCcccccccccchHHHHHHHHHhhCCCcccccccccc
Confidence            3455688999999999988765544    45677899999998764321          123445678999999999998


Q ss_pred             CChhHH----HHhhcCCCccEEEccCCCCchHHHHHhhCCCCCCEEecCCCCCChHHHHHhhCCCCCCEEeccCCCCChh
Q 012186          240 LSDDGC----EKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNLDSCGIGDEGLVNLTGLCNLKCLELSDTQVGSS  315 (469)
Q Consensus       240 ~~~~~~----~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~  315 (469)
                      +.....    ..+...++|+.|++++|.+.......+...  +..+         .........+.|+.+.+.++.+...
T Consensus       105 i~~~~~~~l~~~l~~~~~L~~L~l~~n~l~~~~~~~l~~~--l~~~---------~~~~~~~~~~~L~~l~l~~n~i~~~  173 (344)
T d2ca6a1         105 FGPTAQEPLIDFLSKHTPLEHLYLHNNGLGPQAGAKIARA--LQEL---------AVNKKAKNAPPLRSIICGRNRLENG  173 (344)
T ss_dssp             CCTTTHHHHHHHHHHCTTCCEEECCSSCCHHHHHHHHHHH--HHHH---------HHHHHHHTCCCCCEEECCSSCCTGG
T ss_pred             cccccccchhhhhcccccchheeccccccccccccccccc--cccc---------ccccccccCcccceeeccccccccc
Confidence            876543    344678999999999998764332222110  0000         0001112344455555555444432


Q ss_pred             hHH----HhhCCCCCcEEecccCCCCchHH-----HhhhCCCCCcEEEccCCCCCHHHH----HHHhcCCCCCEeecCCC
Q 012186          316 GLR----HLSGLTNLESINLSFTGISDGSL-----RKLAGLSSLKSLNLDARQITDTGL----AALTSLTGLTHLDLFGA  382 (469)
Q Consensus       316 ~~~----~~~~~~~L~~L~l~~~~~~~~~~-----~~~~~~~~L~~L~l~~~~~~~~~~----~~l~~~~~L~~L~l~~~  382 (469)
                      ...    .+..++.|+.|++++|.+.....     ..+..+++|+.|++++|.++..+.    ..+..+++|++|++++|
T Consensus       174 ~~~~l~~~l~~~~~L~~L~L~~n~i~~~g~~~~l~~~l~~~~~L~~L~Ls~N~i~~~g~~~L~~~l~~~~~L~~L~Ls~n  253 (344)
T d2ca6a1         174 SMKEWAKTFQSHRLLHTVKMVQNGIRPEGIEHLLLEGLAYCQELKVLDLQDNTFTHLGSSALAIALKSWPNLRELGLNDC  253 (344)
T ss_dssp             GHHHHHHHHHHCTTCCEEECCSSCCCHHHHHHHHHTTGGGCTTCCEEECCSSCCHHHHHHHHHHHGGGCTTCCEEECTTC
T ss_pred             ccccccchhhhhhhhcccccccccccccccccchhhhhcchhhhcccccccccccccccccccccccccccchhhhhhcC
Confidence            222    23345566666666666554322     123456777777777777665433    33456777888888888


Q ss_pred             CCChhHHHHh----Hc--CCCCCeeeeCCCCCCHHHHHHH-----hcCCCCCeeeccCCCCCC
Q 012186          383 RITDSGAAYL----RN--FKNLRSLEICGGGLTDAGVKHI-----KDLSSLTLLNLSQNCNLT  434 (469)
Q Consensus       383 ~~~~~~~~~~----~~--~~~L~~L~l~~~~~~~~~~~~l-----~~~~~L~~L~l~~~~~l~  434 (469)
                      .+++.....+    ..  .+.|++|++++|+++..+...+     .+++.|++|++++| .+.
T Consensus       254 ~i~~~g~~~l~~~l~~~~~~~L~~L~ls~N~i~~~~~~~l~~~l~~~~~~L~~L~l~~N-~~~  315 (344)
T d2ca6a1         254 LLSARGAAAVVDAFSKLENIGLQTLRLQYNEIELDAVRTLKTVIDEKMPDLLFLELNGN-RFS  315 (344)
T ss_dssp             CCCHHHHHHHHHHHHTCSSCCCCEEECCSSCCBHHHHHHHHHHHHHHCTTCCEEECTTS-BSC
T ss_pred             ccCchhhHHHHHHhhhccCCCCCEEECCCCcCChHHHHHHHHHHHccCCCCCEEECCCC-cCC
Confidence            7776654443    22  3578888888888876554433     24678888888888 443

>d1h6ta2 c.10.2.1 (A:31-240) Internalin B {Listeria monocytogenes [TaxId: 1639]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin B
species: Listeria monocytogenes [TaxId: 1639]

Probab=99.61  E-value=1.1e-15  Score=127.58  Aligned_cols=144  Identities=30%  Similarity=0.350  Sum_probs=70.7

Q ss_pred             hCCCCCCEEeccCCCCChhhHHHhhCCCCCcEEecccCCCCchHHHhhhCCCCCcEEEccCCCCCHHHHHHHhcCCCCCE
Q 012186          297 TGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISDGSLRKLAGLSSLKSLNLDARQITDTGLAALTSLTGLTH  376 (469)
Q Consensus       297 ~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~  376 (469)
                      ..+++|++|++++|.+....  .++.+++|+.|++++|.+.+..  .+..+++|+.|+++++.+...  ..+..+++++.
T Consensus        65 ~~l~~L~~L~L~~n~i~~l~--~~~~l~~L~~L~l~~n~i~~l~--~l~~l~~L~~L~l~~~~~~~~--~~l~~l~~l~~  138 (210)
T d1h6ta2          65 QYLPNVTKLFLNGNKLTDIK--PLANLKNLGWLFLDENKVKDLS--SLKDLKKLKSLSLEHNGISDI--NGLVHLPQLES  138 (210)
T ss_dssp             GGCTTCCEEECCSSCCCCCG--GGTTCTTCCEEECCSSCCCCGG--GGTTCTTCCEEECTTSCCCCC--GGGGGCTTCCE
T ss_pred             hhCCCCCEEeCCCccccCcc--ccccCccccccccccccccccc--ccccccccccccccccccccc--ccccccccccc
Confidence            33444444444444443322  2334445555555554444321  244455555555555444432  23445555555


Q ss_pred             eecCCCCCChhHHHHhHcCCCCCeeeeCCCCCCHHHHHHHhcCCCCCeeeccCCCCCChhHHHHHHhCccccccccc
Q 012186          377 LDLFGARITDSGAAYLRNFKNLRSLEICGGGLTDAGVKHIKDLSSLTLLNLSQNCNLTDKTLELISGLTGLVSLNVS  453 (469)
Q Consensus       377 L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~l~~~~~~~l~~l~~L~~L~l~  453 (469)
                      +++++|.+++.  ..+..+++|+.+++++|++++..  .+.++++|++|++++| .++...  .+.++++|+.|+|+
T Consensus       139 l~~~~n~l~~~--~~~~~l~~L~~l~l~~n~l~~i~--~l~~l~~L~~L~Ls~N-~i~~l~--~l~~l~~L~~L~Ls  208 (210)
T d1h6ta2         139 LYLGNNKITDI--TVLSRLTKLDTLSLEDNQISDIV--PLAGLTKLQNLYLSKN-HISDLR--ALAGLKNLDVLELF  208 (210)
T ss_dssp             EECCSSCCCCC--GGGGGCTTCSEEECCSSCCCCCG--GGTTCTTCCEEECCSS-CCCBCG--GGTTCTTCSEEEEE
T ss_pred             ccccccccccc--ccccccccccccccccccccccc--cccCCCCCCEEECCCC-CCCCCh--hhcCCCCCCEEEcc
Confidence            55555555442  23444555666666665555432  2455566666666666 455432  35556666666654

>d2omxa2 c.10.2.1 (A:37-235) Internalin B {Listeria monocytogenes [TaxId: 1639]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin B
species: Listeria monocytogenes [TaxId: 1639]

Probab=99.60  E-value=1.7e-15  Score=125.26  Aligned_cols=16  Identities=31%  Similarity=0.524  Sum_probs=6.4

Q ss_pred             cCCCCCEeecCCCCCC
Q 012186          370 SLTGLTHLDLFGARIT  385 (469)
Q Consensus       370 ~~~~L~~L~l~~~~~~  385 (469)
                      .+++|+.|++.+|+++
T Consensus       148 ~~~~L~~L~l~~n~l~  163 (199)
T d2omxa2         148 GLTSLQQLNFSSNQVT  163 (199)
T ss_dssp             TCTTCSEEECCSSCCC
T ss_pred             cccccccccccccccc
Confidence            3344444444444333

>d2omxa2 c.10.2.1 (A:37-235) Internalin B {Listeria monocytogenes [TaxId: 1639]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin B
species: Listeria monocytogenes [TaxId: 1639]

Probab=99.60  E-value=1.3e-15  Score=125.97  Aligned_cols=161  Identities=32%  Similarity=0.425  Sum_probs=116.4

Q ss_pred             CCCCCEEecCCCCCChHHHHHhhCCCCCCEEeccCCCCChhhHHHhhCCCCCcEEecccCCCCchHHHhhhCCCCCcEEE
Q 012186          275 LTNLESLNLDSCGIGDEGLVNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISDGSLRKLAGLSSLKSLN  354 (469)
Q Consensus       275 l~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~  354 (469)
                      ++++++|+++++.+...  ..++.+++|++|++++|.+....  .++.+++|+.|.+++|.+....  .+..++.|+.|+
T Consensus        39 l~~l~~L~l~~~~i~~l--~~l~~l~nL~~L~Ls~N~l~~~~--~l~~l~~L~~L~l~~n~~~~~~--~l~~l~~L~~L~  112 (199)
T d2omxa2          39 LDQVTTLQADRLGIKSI--DGVEYLNNLTQINFSNNQLTDIT--PLKNLTKLVDILMNNNQIADIT--PLANLTNLTGLT  112 (199)
T ss_dssp             HTTCCEEECTTSCCCCC--TTGGGCTTCCEEECCSSCCCCCG--GGTTCTTCCEEECCSSCCCCCG--GGTTCTTCSEEE
T ss_pred             hcCCCEEECCCCCCCCc--cccccCCCcCcCccccccccCcc--cccCCccccccccccccccccc--cccccccccccc
Confidence            34566666666655432  23556677777777777666543  2667777777777777665543  366778888888


Q ss_pred             ccCCCCCHHHHHHHhcCCCCCEeecCCCCCChhHHHHhHcCCCCCeeeeCCCCCCHHHHHHHhcCCCCCeeeccCCCCCC
Q 012186          355 LDARQITDTGLAALTSLTGLTHLDLFGARITDSGAAYLRNFKNLRSLEICGGGLTDAGVKHIKDLSSLTLLNLSQNCNLT  434 (469)
Q Consensus       355 l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~l~  434 (469)
                      ++++.....  ..+..+++|+.|++++|++...  ..+..+++|+.|++.+|.+++..  .++++++|++|++++| .++
T Consensus       113 l~~~~~~~~--~~~~~l~~L~~L~l~~n~l~~~--~~l~~~~~L~~L~l~~n~l~~l~--~l~~l~~L~~L~ls~N-~i~  185 (199)
T d2omxa2         113 LFNNQITDI--DPLKNLTNLNRLELSSNTISDI--SALSGLTSLQQLNFSSNQVTDLK--PLANLTTLERLDISSN-KVS  185 (199)
T ss_dssp             CCSSCCCCC--GGGTTCTTCSEEECCSSCCCCC--GGGTTCTTCSEEECCSSCCCCCG--GGTTCTTCCEEECCSS-CCC
T ss_pred             ccccccccc--cccchhhhhHHhhhhhhhhccc--ccccccccccccccccccccCCc--cccCCCCCCEEECCCC-CCC
Confidence            888777653  3466788999999999888763  35778899999999999988763  4788999999999999 677


Q ss_pred             hhHHHHHHhCcccccc
Q 012186          435 DKTLELISGLTGLVSL  450 (469)
Q Consensus       435 ~~~~~~l~~l~~L~~L  450 (469)
                      +..  .+.++++|+.|
T Consensus       186 ~i~--~l~~L~~L~~L  199 (199)
T d2omxa2         186 DIS--VLAKLTNLESL  199 (199)
T ss_dssp             CCG--GGGGCTTCSEE
T ss_pred             CCc--cccCCCCCCcC
Confidence            743  36778888765

>d1h6ta2 c.10.2.1 (A:31-240) Internalin B {Listeria monocytogenes [TaxId: 1639]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin B
species: Listeria monocytogenes [TaxId: 1639]

Probab=99.59  E-value=4.9e-15  Score=123.50  Aligned_cols=163  Identities=30%  Similarity=0.348  Sum_probs=80.5

Q ss_pred             CCCcEEECCCCCCChhHHHHhhcCCCccEEEccCCCCchHHHHHhhCCCCCCEEecCCCCCChHHHHHhhCCCCCCEEec
Q 012186          228 GSLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNLDSCGIGDEGLVNLTGLCNLKCLEL  307 (469)
Q Consensus       228 ~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l  307 (469)
                      .+|++|++.++.+...  ..+..+++|+.|++++|.+++..  .+..+++|+.|++++|.+...  ..+..+        
T Consensus        46 ~~L~~L~l~~~~i~~l--~~l~~l~~L~~L~L~~n~i~~l~--~~~~l~~L~~L~l~~n~i~~l--~~l~~l--------  111 (210)
T d1h6ta2          46 NSIDQIIANNSDIKSV--QGIQYLPNVTKLFLNGNKLTDIK--PLANLKNLGWLFLDENKVKDL--SSLKDL--------  111 (210)
T ss_dssp             HTCCEEECTTSCCCCC--TTGGGCTTCCEEECCSSCCCCCG--GGTTCTTCCEEECCSSCCCCG--GGGTTC--------
T ss_pred             cCccEEECcCCCCCCc--hhHhhCCCCCEEeCCCccccCcc--ccccCcccccccccccccccc--cccccc--------
Confidence            3555555555554432  12444555555555555554321  234455555555555544332  123444        


Q ss_pred             cCCCCChhhHHHhhCCCCCcEEecccCCCCchHHHhhhCCCCCcEEEccCCCCCHHHHHHHhcCCCCCEeecCCCCCChh
Q 012186          308 SDTQVGSSGLRHLSGLTNLESINLSFTGISDGSLRKLAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLFGARITDS  387 (469)
Q Consensus       308 ~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~  387 (469)
                                      ++|+.|.++++.+...  ..+..++.++.++++++.++..  ..+..+++|+++++++|.+++.
T Consensus       112 ----------------~~L~~L~l~~~~~~~~--~~l~~l~~l~~l~~~~n~l~~~--~~~~~l~~L~~l~l~~n~l~~i  171 (210)
T d1h6ta2         112 ----------------KKLKSLSLEHNGISDI--NGLVHLPQLESLYLGNNKITDI--TVLSRLTKLDTLSLEDNQISDI  171 (210)
T ss_dssp             ----------------TTCCEEECTTSCCCCC--GGGGGCTTCCEEECCSSCCCCC--GGGGGCTTCSEEECCSSCCCCC
T ss_pred             ----------------cccccccccccccccc--cccccccccccccccccccccc--cccccccccccccccccccccc
Confidence                            4444454444443321  2244445555555555555432  2233455566666665555543


Q ss_pred             HHHHhHcCCCCCeeeeCCCCCCHHHHHHHhcCCCCCeeecc
Q 012186          388 GAAYLRNFKNLRSLEICGGGLTDAGVKHIKDLSSLTLLNLS  428 (469)
Q Consensus       388 ~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~  428 (469)
                      .  .+.++++|+.|++++|++++. + .+.++++|++|+|+
T Consensus       172 ~--~l~~l~~L~~L~Ls~N~i~~l-~-~l~~l~~L~~L~Ls  208 (210)
T d1h6ta2         172 V--PLAGLTKLQNLYLSKNHISDL-R-ALAGLKNLDVLELF  208 (210)
T ss_dssp             G--GGTTCTTCCEEECCSSCCCBC-G-GGTTCTTCSEEEEE
T ss_pred             c--cccCCCCCCEEECCCCCCCCC-h-hhcCCCCCCEEEcc
Confidence            2  245556666666666666543 2 35556666666654

>d1xwdc1 c.10.2.7 (C:18-259) Follicle-stimulating hormone receptor {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Follicle-stimulating hormone receptor
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.53  E-value=7.6e-16  Score=132.13  Aligned_cols=102  Identities=18%  Similarity=0.177  Sum_probs=55.6

Q ss_pred             cEEEecCCCCChHhhHhhhcCCCCCEEecCCCcccChhHhHhhhCCCCCCEEeCCCCCcCcHHHHHHHhCCCCCCEEecc
Q 012186           60 LSVDLSGSDVTDSGLIHLKDCSNLQSLDFNFCIQISDGGLEHLRGLSNLTSLSFRRNNAITAQGMKAFAGLINLVKLDLE  139 (469)
Q Consensus        60 ~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~l~  139 (469)
                      +.++.++.+++ .+|..+  .+++++|+++++ .++.....+|.++++|++|++++|.......+..|..+++++++.+.
T Consensus        11 ~~i~c~~~~l~-~iP~~l--~~~l~~L~Ls~n-~i~~l~~~~f~~l~~L~~L~ls~n~~~~~i~~~~f~~l~~l~~l~~~   86 (242)
T d1xwdc1          11 RVFLCQESKVT-EIPSDL--PRNAIELRFVLT-KLRVIQKGAFSGFGDLEKIEISQNDVLEVIEADVFSNLPKLHEIRIE   86 (242)
T ss_dssp             SEEEEESCSCS-SCCSCS--CSCCSEEEEESC-CCCEECTTTTTTCTTCCEEEEESCTTCCEECSSSEESCTTCCEEEEE
T ss_pred             CEEEEeCCCCC-CcCCCC--CCCCCEEECcCC-cCCccChhHhhccchhhhhhhccccccceeecccccccccccccccc
Confidence            45666665555 344332  246777777763 45554455566667777777766654333333445556666666654


Q ss_pred             cccccc-cccccccCCCCccEEEccCC
Q 012186          140 RCTRIH-GGLVNLKGLMKLESLNIKWC  165 (469)
Q Consensus       140 ~~~~~~-~~~~~l~~l~~L~~L~l~~~  165 (469)
                      .+..+. ..+..+..+++|+++++.++
T Consensus        87 ~~n~l~~~~~~~~~~l~~L~~l~l~~~  113 (242)
T d1xwdc1          87 KANNLLYINPEAFQNLPNLQYLLISNT  113 (242)
T ss_dssp             CCTTCCEECTTSEECCTTCCEEEEESC
T ss_pred             ccccccccccccccccccccccccchh
Confidence            432222 22334556666666666654

>d1jl5a_ c.10.2.6 (A:) Leucine rich effector protein YopM {Yersinia pestis [TaxId: 632]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Leucine rich effector protein YopM
domain: Leucine rich effector protein YopM
species: Yersinia pestis [TaxId: 632]

Probab=99.52  E-value=7.9e-13  Score=119.86  Aligned_cols=137  Identities=15%  Similarity=0.077  Sum_probs=81.7

Q ss_pred             CCccEEEecCCCCChHhhHhhhcCCCCCEEecCCCcccChhHhHhhhCCCCCCEEeCCCCCcCcHHHHHHHhCC-CCCCE
Q 012186           57 SSLLSVDLSGSDVTDSGLIHLKDCSNLQSLDFNFCIQISDGGLEHLRGLSNLTSLSFRRNNAITAQGMKAFAGL-INLVK  135 (469)
Q Consensus        57 ~~l~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~l-~~L~~  135 (469)
                      .++++|+++++.++. +|.   -.++|++|++++ +.++.. +.   .+.+|++|++.++....      +..+ +.|++
T Consensus        38 ~~l~~LdLs~~~L~~-lp~---~~~~L~~L~Ls~-N~l~~l-p~---~~~~L~~L~l~~n~l~~------l~~lp~~L~~  102 (353)
T d1jl5a_          38 RQAHELELNNLGLSS-LPE---LPPHLESLVASC-NSLTEL-PE---LPQSLKSLLVDNNNLKA------LSDLPPLLEY  102 (353)
T ss_dssp             HTCSEEECTTSCCSC-CCS---CCTTCSEEECCS-SCCSSC-CC---CCTTCCEEECCSSCCSC------CCSCCTTCCE
T ss_pred             cCCCEEEeCCCCCCC-CCC---CCCCCCEEECCC-CCCccc-cc---chhhhhhhhhhhcccch------hhhhcccccc
Confidence            478899999888863 453   357889999987 456643 32   24578888888876421      2233 35888


Q ss_pred             EecccccccccccccccCCCCccEEEccCCCCCChhhhhcccCCCCCCEEEecccccChhhhhhccCCCCCCeeeccCCC
Q 012186          136 LDLERCTRIHGGLVNLKGLMKLESLNIKWCNCITDSDMKPLSGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCP  215 (469)
Q Consensus       136 L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~  215 (469)
                      |++++|. +...+ .+..+++|++|++.++....     .......+..+.+.......  ...+..++.++.+.+.++.
T Consensus       103 L~L~~n~-l~~lp-~~~~l~~L~~L~l~~~~~~~-----~~~~~~~l~~l~~~~~~~~~--~~~l~~l~~l~~L~l~~n~  173 (353)
T d1jl5a_         103 LGVSNNQ-LEKLP-ELQNSSFLKIIDVDNNSLKK-----LPDLPPSLEFIAAGNNQLEE--LPELQNLPFLTAIYADNNS  173 (353)
T ss_dssp             EECCSSC-CSSCC-CCTTCTTCCEEECCSSCCSC-----CCCCCTTCCEEECCSSCCSS--CCCCTTCTTCCEEECCSSC
T ss_pred             ccccccc-ccccc-chhhhccceeeccccccccc-----cccccccccchhhccccccc--cccccccccceeccccccc
Confidence            8888764 33333 35677788888877644221     11223455666655443322  2334556666666666664


Q ss_pred             Cc
Q 012186          216 VT  217 (469)
Q Consensus       216 ~~  217 (469)
                      ..
T Consensus       174 ~~  175 (353)
T d1jl5a_         174 LK  175 (353)
T ss_dssp             CS
T ss_pred             cc
Confidence            43

>d1xwdc1 c.10.2.7 (C:18-259) Follicle-stimulating hormone receptor {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Follicle-stimulating hormone receptor
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.48  E-value=5.5e-15  Score=126.67  Aligned_cols=200  Identities=12%  Similarity=0.055  Sum_probs=124.1

Q ss_pred             CCCccEEEecCCCCChHhhHhhhcCCCCCEEecCCCcccChhHhHhhhCCCCCCEEeCCCCCcCcHHHHHHHhCCCCCCE
Q 012186           56 GSSLLSVDLSGSDVTDSGLIHLKDCSNLQSLDFNFCIQISDGGLEHLRGLSNLTSLSFRRNNAITAQGMKAFAGLINLVK  135 (469)
Q Consensus        56 ~~~l~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~  135 (469)
                      +.++++|+++++.++...+..|.++++|++|++++|..........|..+++++++.+..+.......+..+..+++|++
T Consensus        28 ~~~l~~L~Ls~n~i~~l~~~~f~~l~~L~~L~ls~n~~~~~i~~~~f~~l~~l~~l~~~~~n~l~~~~~~~~~~l~~L~~  107 (242)
T d1xwdc1          28 PRNAIELRFVLTKLRVIQKGAFSGFGDLEKIEISQNDVLEVIEADVFSNLPKLHEIRIEKANNLLYINPEAFQNLPNLQY  107 (242)
T ss_dssp             CSCCSEEEEESCCCCEECTTTTTTCTTCCEEEEESCTTCCEECSSSEESCTTCCEEEEECCTTCCEECTTSEECCTTCCE
T ss_pred             CCCCCEEECcCCcCCccChhHhhccchhhhhhhccccccceeeccccccccccccccccccccccccccccccccccccc
Confidence            35899999999999865566789999999999998644444456678899999999987654455566677889999999


Q ss_pred             Eeccccccccccc-ccccCCCCccEEEccCCCCCChhhhhcccCC-CCCCEEEecccccChhhhhhccCCCCCCee-ecc
Q 012186          136 LDLERCTRIHGGL-VNLKGLMKLESLNIKWCNCITDSDMKPLSGL-TNLKSLQISCSKVTDSGIAYLKGLQKLTLL-NLE  212 (469)
Q Consensus       136 L~l~~~~~~~~~~-~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~-~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L-~l~  212 (469)
                      ++++++....... ..+..++.+..+...+ ..+.......+..+ ..++.+++.++.++......+ ...++..+ .+.
T Consensus       108 l~l~~~~l~~~~~~~~~~~l~~l~~~~~~n-~~l~~i~~~~~~~~~~~l~~L~l~~n~l~~i~~~~~-~~~~l~~~~~l~  185 (242)
T d1xwdc1         108 LLISNTGIKHLPDVHKIHSLQKVLLDIQDN-INIHTIERNSFVGLSFESVILWLNKNGIQEIHNCAF-NGTQLDELNLSD  185 (242)
T ss_dssp             EEEESCCCCSCCCCTTTCBSSCEEEEEESC-TTCCEECTTSSTTSBSSCEEEECCSSCCCEECTTTT-TTCCEEEEECTT
T ss_pred             cccchhhhcccccccccccccccccccccc-cccccccccccccccccceeeecccccccccccccc-cchhhhcccccc
Confidence            9999975332211 1233344444444443 33443334444443 366677777776665443333 23343333 344


Q ss_pred             CCCCchhhHHhhhcCCCCcEEECCCCCCChhHHHHhhcCCCccEE
Q 012186          213 GCPVTAACLDSLSALGSLFYLNLNRCQLSDDGCEKFSKIGSLKVL  257 (469)
Q Consensus       213 ~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L  257 (469)
                      ++.++......|.++++|+.|++++|.+.......|..+++|+.+
T Consensus       186 ~n~l~~l~~~~f~~l~~L~~L~Ls~N~l~~l~~~~~~~l~~L~~l  230 (242)
T d1xwdc1         186 NNNLEELPNDVFHGASGPVILDISRTRIHSLPSYGLENLKKLRAR  230 (242)
T ss_dssp             CTTCCCCCTTTTTTSCCCSEEECTTSCCCCCCSSSCTTCCEEESS
T ss_pred             ccccccccHHHhcCCCCCCEEECCCCcCCccCHHHHcCCcccccC
Confidence            555555444445666666666666666554333333444444333

>d1jl5a_ c.10.2.6 (A:) Leucine rich effector protein YopM {Yersinia pestis [TaxId: 632]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Leucine rich effector protein YopM
domain: Leucine rich effector protein YopM
species: Yersinia pestis [TaxId: 632]

Probab=99.47  E-value=1e-12  Score=119.17  Aligned_cols=312  Identities=18%  Similarity=0.118  Sum_probs=182.4

Q ss_pred             CCCCEEecCCCcccChhHhHhhhCCCCCCEEeCCCCCcCcHHHHHHHhCCCCCCEEecccccccccccccccCC-CCccE
Q 012186           81 SNLQSLDFNFCIQISDGGLEHLRGLSNLTSLSFRRNNAITAQGMKAFAGLINLVKLDLERCTRIHGGLVNLKGL-MKLES  159 (469)
Q Consensus        81 ~~L~~L~l~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~l~~l-~~L~~  159 (469)
                      .++++|+++++ .++.. |+   ..++|++|++++|.+.  .+|.   ...+|+.|++.++. +..    +..+ +.|++
T Consensus        38 ~~l~~LdLs~~-~L~~l-p~---~~~~L~~L~Ls~N~l~--~lp~---~~~~L~~L~l~~n~-l~~----l~~lp~~L~~  102 (353)
T d1jl5a_          38 RQAHELELNNL-GLSSL-PE---LPPHLESLVASCNSLT--ELPE---LPQSLKSLLVDNNN-LKA----LSDLPPLLEY  102 (353)
T ss_dssp             HTCSEEECTTS-CCSCC-CS---CCTTCSEEECCSSCCS--SCCC---CCTTCCEEECCSSC-CSC----CCSCCTTCCE
T ss_pred             cCCCEEEeCCC-CCCCC-CC---CCCCCCEEECCCCCCc--cccc---chhhhhhhhhhhcc-cch----hhhhcccccc
Confidence            47889999884 55542 32   2468899999988752  3343   24578888888763 222    2223 35888


Q ss_pred             EEccCCCCCChhhhhcccCCCCCCEEEecccccChhhhhhccCCCCCCeeeccCCCCchhhHHhhhcCCCCcEEECCCCC
Q 012186          160 LNIKWCNCITDSDMKPLSGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACLDSLSALGSLFYLNLNRCQ  239 (469)
Q Consensus       160 L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~  239 (469)
                      |+++++. +...  ..++.+++|+++++.++.+....    .....+..+.+..+....  ...+..++.++.+.+.++.
T Consensus       103 L~L~~n~-l~~l--p~~~~l~~L~~L~l~~~~~~~~~----~~~~~l~~l~~~~~~~~~--~~~l~~l~~l~~L~l~~n~  173 (353)
T d1jl5a_         103 LGVSNNQ-LEKL--PELQNSSFLKIIDVDNNSLKKLP----DLPPSLEFIAAGNNQLEE--LPELQNLPFLTAIYADNNS  173 (353)
T ss_dssp             EECCSSC-CSSC--CCCTTCTTCCEEECCSSCCSCCC----CCCTTCCEEECCSSCCSS--CCCCTTCTTCCEEECCSSC
T ss_pred             ccccccc-cccc--cchhhhccceeeccccccccccc----cccccccchhhccccccc--cccccccccceeccccccc
Confidence            8888754 4322  24567788888888777665322    234556666666554332  2235567777888877766


Q ss_pred             CChhHHHHhhcCCCccEEEccCCCCchHHHHHhhCCCCCCEEecCCCCCChHHHHHhhCCCCCCEEeccCCCCChhhHHH
Q 012186          240 LSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNLDSCGIGDEGLVNLTGLCNLKCLELSDTQVGSSGLRH  319 (469)
Q Consensus       240 ~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~  319 (469)
                      .....    ......+.+...+..+..  ...+..++.++.+.++++.....    .....++..+.+..+.+....   
T Consensus       174 ~~~~~----~~~~~~~~l~~~~~~~~~--~~~~~~l~~L~~l~l~~n~~~~~----~~~~~~l~~~~~~~~~~~~~~---  240 (353)
T d1jl5a_         174 LKKLP----DLPLSLESIVAGNNILEE--LPELQNLPFLTTIYADNNLLKTL----PDLPPSLEALNVRDNYLTDLP---  240 (353)
T ss_dssp             CSSCC----CCCTTCCEEECCSSCCSS--CCCCTTCTTCCEEECCSSCCSSC----CSCCTTCCEEECCSSCCSCCC---
T ss_pred             ccccc----cccccccccccccccccc--ccccccccccccccccccccccc----ccccccccccccccccccccc---
Confidence            54311    112334455555444332  11245667788888877654321    123456677777666544321   


Q ss_pred             hhCCCCCcEEecccCCCCchHHHhhhCC-CCCcEEEccCCCCCHHHHHHHhcCCCCCEeecCCCCCChhHHHHhHcCCCC
Q 012186          320 LSGLTNLESINLSFTGISDGSLRKLAGL-SSLKSLNLDARQITDTGLAALTSLTGLTHLDLFGARITDSGAAYLRNFKNL  398 (469)
Q Consensus       320 ~~~~~~L~~L~l~~~~~~~~~~~~~~~~-~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L  398 (469)
                       ...+.+....+..+....     +..+ .......+..+.+...    ...+++|++|++++|+++.. |.   .+++|
T Consensus       241 -~~~~~l~~~~~~~~~~~~-----l~~l~~~~~~~~~~~~~~~~~----~~~~~~L~~L~Ls~N~l~~l-p~---~~~~L  306 (353)
T d1jl5a_         241 -ELPQSLTFLDVSENIFSG-----LSELPPNLYYLNASSNEIRSL----CDLPPSLEELNVSNNKLIEL-PA---LPPRL  306 (353)
T ss_dssp             -CCCTTCCEEECCSSCCSE-----ESCCCTTCCEEECCSSCCSEE----CCCCTTCCEEECCSSCCSCC-CC---CCTTC
T ss_pred             -cccccccccccccccccc-----cccccchhcccccccCccccc----cccCCCCCEEECCCCccCcc-cc---ccCCC
Confidence             223455555555443322     1111 3344555555555543    12467899999999888763 32   36788


Q ss_pred             CeeeeCCCCCCHHHHHHHhcCCCCCeeeccCCCCCChhHHHHHHhCcccccccc
Q 012186          399 RSLEICGGGLTDAGVKHIKDLSSLTLLNLSQNCNLTDKTLELISGLTGLVSLNV  452 (469)
Q Consensus       399 ~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~l~~~~~~~l~~l~~L~~L~l  452 (469)
                      +.|++++|+++.. |.   .+++|++|++++| .++..+ +   ..++|+.|.+
T Consensus       307 ~~L~L~~N~L~~l-~~---~~~~L~~L~L~~N-~L~~lp-~---~~~~L~~L~~  351 (353)
T d1jl5a_         307 ERLIASFNHLAEV-PE---LPQNLKQLHVEYN-PLREFP-D---IPESVEDLRM  351 (353)
T ss_dssp             CEEECCSSCCSCC-CC---CCTTCCEEECCSS-CCSSCC-C---CCTTCCEEEC
T ss_pred             CEEECCCCcCCcc-cc---ccCCCCEEECcCC-cCCCCC-c---cccccCeeEC
Confidence            8999998888764 32   2567889999998 566532 1   1235666655

>d1a9na_ c.10.2.4 (A:) Splicesomal U2A' protein {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: U2A'-like
domain: Splicesomal U2A' protein
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.47  E-value=1.5e-14  Score=114.44  Aligned_cols=134  Identities=19%  Similarity=0.229  Sum_probs=86.8

Q ss_pred             CCCCCcEEecccCCCCchHHHhhhCCCCCcEEEccCCCCCHHHHHHHhcCCCCCEeecCCCCCChhHHHHhHcCCCCCee
Q 012186          322 GLTNLESINLSFTGISDGSLRKLAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLFGARITDSGAAYLRNFKNLRSL  401 (469)
Q Consensus       322 ~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L  401 (469)
                      ++.++++|++++|.++... ..+..+++|+.|++++|.++..  ..+..+++|++|++++|+++...+..+..+++|+.|
T Consensus        16 n~~~lr~L~L~~n~I~~i~-~~~~~l~~L~~L~Ls~N~i~~l--~~~~~l~~L~~L~ls~N~i~~l~~~~~~~l~~L~~L   92 (162)
T d1a9na_          16 NAVRDRELDLRGYKIPVIE-NLGATLDQFDAIDFSDNEIRKL--DGFPLLRRLKTLLVNNNRICRIGEGLDQALPDLTEL   92 (162)
T ss_dssp             CTTSCEEEECTTSCCCSCC-CGGGGTTCCSEEECCSSCCCEE--CCCCCCSSCCEEECCSSCCCEECSCHHHHCTTCCEE
T ss_pred             CcCcCcEEECCCCCCCccC-ccccccccCCEEECCCCCCCcc--CCcccCcchhhhhcccccccCCCccccccccccccc
Confidence            4556666666666665542 2334566777777777777654  335667777777777777776555555667777778


Q ss_pred             eeCCCCCCHHH-HHHHhcCCCCCeeeccCCCCCChh---HHHHHHhCcccccccccCCCCCHHH
Q 012186          402 EICGGGLTDAG-VKHIKDLSSLTLLNLSQNCNLTDK---TLELISGLTGLVSLNVSNSRITSAG  461 (469)
Q Consensus       402 ~l~~~~~~~~~-~~~l~~~~~L~~L~l~~~~~l~~~---~~~~l~~l~~L~~L~l~~~~~~~~~  461 (469)
                      ++++|+++... ...+..+++|++|++++|+ ++..   -+..+..+|+|+.||  +.+++++.
T Consensus        93 ~L~~N~i~~~~~l~~l~~l~~L~~L~l~~N~-i~~~~~~r~~~i~~lp~L~~LD--~~~i~~~e  153 (162)
T d1a9na_          93 ILTNNSLVELGDLDPLASLKSLTYLCILRNP-VTNKKHYRLYVIYKVPQVRVLD--FQKVKLKE  153 (162)
T ss_dssp             ECCSCCCCCGGGGGGGGGCTTCCEEECCSSG-GGGSTTHHHHHHHHCTTCSEET--TEECCHHH
T ss_pred             eeccccccccccccccccccccchhhcCCCc-cccccchHHHHHHHCCCcCeeC--CCCCCHHH
Confidence            88777776542 2456677888888888883 3332   234567788888877  45555544

>d1a9na_ c.10.2.4 (A:) Splicesomal U2A' protein {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: U2A'-like
domain: Splicesomal U2A' protein
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.39  E-value=1.2e-13  Score=109.13  Aligned_cols=126  Identities=21%  Similarity=0.221  Sum_probs=66.4

Q ss_pred             CCCCCEEeccCCCCChhhHHHhhCCCCCcEEecccCCCCchHHHhhhCCCCCcEEEccCCCCCHHHHHHHhcCCCCCEee
Q 012186          299 LCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISDGSLRKLAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLD  378 (469)
Q Consensus       299 ~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~  378 (469)
                      +.++++|++++|.+.... ..+..+++|+.|++++|.+...  ..+..+++|+.|++++|.++......+..+++|++|+
T Consensus        17 ~~~lr~L~L~~n~I~~i~-~~~~~l~~L~~L~Ls~N~i~~l--~~~~~l~~L~~L~ls~N~i~~l~~~~~~~l~~L~~L~   93 (162)
T d1a9na_          17 AVRDRELDLRGYKIPVIE-NLGATLDQFDAIDFSDNEIRKL--DGFPLLRRLKTLLVNNNRICRIGEGLDQALPDLTELI   93 (162)
T ss_dssp             TTSCEEEECTTSCCCSCC-CGGGGTTCCSEEECCSSCCCEE--CCCCCCSSCCEEECCSSCCCEECSCHHHHCTTCCEEE
T ss_pred             cCcCcEEECCCCCCCccC-ccccccccCCEEECCCCCCCcc--CCcccCcchhhhhcccccccCCCccccccccccccce
Confidence            334445555555444331 2223445555555555555432  2244555666666666666554444445566666666


Q ss_pred             cCCCCCChhHH-HHhHcCCCCCeeeeCCCCCCHHH---HHHHhcCCCCCeeec
Q 012186          379 LFGARITDSGA-AYLRNFKNLRSLEICGGGLTDAG---VKHIKDLSSLTLLNL  427 (469)
Q Consensus       379 l~~~~~~~~~~-~~~~~~~~L~~L~l~~~~~~~~~---~~~l~~~~~L~~L~l  427 (469)
                      +++|++.+... ..+..+++|+.|++++|.++...   +..+..+|+|++|+-
T Consensus        94 L~~N~i~~~~~l~~l~~l~~L~~L~l~~N~i~~~~~~r~~~i~~lp~L~~LD~  146 (162)
T d1a9na_          94 LTNNSLVELGDLDPLASLKSLTYLCILRNPVTNKKHYRLYVIYKVPQVRVLDF  146 (162)
T ss_dssp             CCSCCCCCGGGGGGGGGCTTCCEEECCSSGGGGSTTHHHHHHHHCTTCSEETT
T ss_pred             eccccccccccccccccccccchhhcCCCccccccchHHHHHHHCCCcCeeCC
Confidence            66666554321 34555666666666666554431   234566777777653

>d1w8aa_ c.10.2.7 (A:) Slit {Fruit fly (Drosophila melanogaster) [TaxId: 7227]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Slit
species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]

Probab=99.36  E-value=1.5e-14  Score=118.75  Aligned_cols=109  Identities=19%  Similarity=0.294  Sum_probs=62.6

Q ss_pred             CCCEEeccCCCCCh-hhHHHhhCCCCCcEEecccCCCCchHHHhhhCCCCCcEEEccCCCCCHHHHHHHhcCCCCCEeec
Q 012186          301 NLKCLELSDTQVGS-SGLRHLSGLTNLESINLSFTGISDGSLRKLAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDL  379 (469)
Q Consensus       301 ~L~~L~l~~~~~~~-~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l  379 (469)
                      ++++|++++|.+.. .....+..+++|+.|++++|.+....+..+..+++|++|++++|+++...+..|.++++|++|++
T Consensus        30 ~l~~L~Ls~N~i~~~~~~~~f~~l~~L~~L~L~~N~i~~~~~~~~~~~~~L~~L~Ls~N~l~~l~~~~F~~l~~L~~L~L  109 (192)
T d1w8aa_          30 HTTELLLNDNELGRISSDGLFGRLPHLVKLELKRNQLTGIEPNAFEGASHIQELQLGENKIKEISNKMFLGLHQLKTLNL  109 (192)
T ss_dssp             TCSEEECCSCCCCSBCCSCSGGGCTTCCEEECCSSCCCCBCTTTTTTCTTCCEEECCSCCCCEECSSSSTTCTTCCEEEC
T ss_pred             CCCEEEeCCCCCcccccccccCCCceEeeeeccccccccccccccccccccceeeeccccccccCHHHHhCCCccccccc
Confidence            45555555554432 22333455555666666555555555555555566666666666666555555556666666666


Q ss_pred             CCCCCChhHHHHhHcCCCCCeeeeCCCCCC
Q 012186          380 FGARITDSGAAYLRNFKNLRSLEICGGGLT  409 (469)
Q Consensus       380 ~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~  409 (469)
                      ++|.++...+.+|..+++|++|++++|.+.
T Consensus       110 ~~N~l~~i~~~~f~~l~~L~~l~L~~N~~~  139 (192)
T d1w8aa_         110 YDNQISCVMPGSFEHLNSLTSLNLASNPFN  139 (192)
T ss_dssp             CSSCCCEECTTSSTTCTTCCEEECTTCCBC
T ss_pred             CCccccccCHHHhcCCcccccccccccccc
Confidence            666666655555666666666666666554

>d1w8aa_ c.10.2.7 (A:) Slit {Fruit fly (Drosophila melanogaster) [TaxId: 7227]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Slit
species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]

Probab=99.35  E-value=3e-14  Score=116.87  Aligned_cols=129  Identities=18%  Similarity=0.168  Sum_probs=108.0

Q ss_pred             CCEEeccCCCCChhhHHHhhCCCCCcEEecccCCCCc-hHHHhhhCCCCCcEEEccCCCCCHHHHHHHhcCCCCCEeecC
Q 012186          302 LKCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISD-GSLRKLAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLF  380 (469)
Q Consensus       302 L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~-~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~  380 (469)
                      .+.++.+++.+.... ..  -.+++++|++++|.++. .....+..+++|+.|++++|.+.......+..+++|++|+++
T Consensus        10 ~~~v~Cs~~~L~~iP-~~--lp~~l~~L~Ls~N~i~~~~~~~~f~~l~~L~~L~L~~N~i~~~~~~~~~~~~~L~~L~Ls   86 (192)
T d1w8aa_          10 GTTVDCTGRGLKEIP-RD--IPLHTTELLLNDNELGRISSDGLFGRLPHLVKLELKRNQLTGIEPNAFEGASHIQELQLG   86 (192)
T ss_dssp             TTEEECTTSCCSSCC-SC--CCTTCSEEECCSCCCCSBCCSCSGGGCTTCCEEECCSSCCCCBCTTTTTTCTTCCEEECC
T ss_pred             CCEEEEeCCCcCccC-CC--CCCCCCEEEeCCCCCcccccccccCCCceEeeeeccccccccccccccccccccceeeec
Confidence            457788877766532 22  23689999999999875 445667889999999999999988877888889999999999


Q ss_pred             CCCCChhHHHHhHcCCCCCeeeeCCCCCCHHHHHHHhcCCCCCeeeccCCCCC
Q 012186          381 GARITDSGAAYLRNFKNLRSLEICGGGLTDAGVKHIKDLSSLTLLNLSQNCNL  433 (469)
Q Consensus       381 ~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~l  433 (469)
                      +|+++...+.+|.++++|+.|++++|+++...+..|..+++|++|++++|+..
T Consensus        87 ~N~l~~l~~~~F~~l~~L~~L~L~~N~l~~i~~~~f~~l~~L~~l~L~~N~~~  139 (192)
T d1w8aa_          87 ENKIKEISNKMFLGLHQLKTLNLYDNQISCVMPGSFEHLNSLTSLNLASNPFN  139 (192)
T ss_dssp             SCCCCEECSSSSTTCTTCCEEECCSSCCCEECTTSSTTCTTCCEEECTTCCBC
T ss_pred             cccccccCHHHHhCCCcccccccCCccccccCHHHhcCCcccccccccccccc
Confidence            99999988888999999999999999999988888889999999999999543

>d1dcea3 c.10.2.2 (A:444-567) Rab geranylgeranyltransferase alpha-subunit, C-terminal domain {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Rab geranylgeranyltransferase alpha-subunit, C-terminal domain
domain: Rab geranylgeranyltransferase alpha-subunit, C-terminal domain
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=99.26  E-value=2.1e-12  Score=96.76  Aligned_cols=98  Identities=21%  Similarity=0.320  Sum_probs=44.1

Q ss_pred             EEecccCCCCchHHHhhhCCCCCcEEEccCCCCCHHHHHHHhcCCCCCEeecCCCCCChhHHHHhHcCCCCCeeeeCCCC
Q 012186          328 SINLSFTGISDGSLRKLAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLFGARITDSGAAYLRNFKNLRSLEICGGG  407 (469)
Q Consensus       328 ~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~  407 (469)
                      .|++++|.++...  .+..+++|++|++++|.++.. +..+..+++|+.|++++|.+++..  .+..+++|+.|++++|+
T Consensus         2 ~L~Ls~n~l~~l~--~l~~l~~L~~L~ls~N~l~~l-p~~~~~l~~L~~L~l~~N~i~~l~--~~~~l~~L~~L~l~~N~   76 (124)
T d1dcea3           2 VLHLAHKDLTVLC--HLEQLLLVTHLDLSHNRLRAL-PPALAALRCLEVLQASDNALENVD--GVANLPRLQELLLCNNR   76 (124)
T ss_dssp             EEECTTSCCSSCC--CGGGGTTCCEEECCSSCCCCC-CGGGGGCTTCCEEECCSSCCCCCG--GGTTCSSCCEEECCSSC
T ss_pred             EEEcCCCCCCCCc--ccccCCCCCEEECCCCccCcc-hhhhhhhhcccccccccccccccC--ccccccccCeEECCCCc
Confidence            3444444443321  233444444444444444433 123444445555555555444421  24445555555555555


Q ss_pred             CCHHH-HHHHhcCCCCCeeeccCC
Q 012186          408 LTDAG-VKHIKDLSSLTLLNLSQN  430 (469)
Q Consensus       408 ~~~~~-~~~l~~~~~L~~L~l~~~  430 (469)
                      +++.. +..+..+++|+.|++++|
T Consensus        77 i~~~~~~~~l~~~~~L~~L~l~~N  100 (124)
T d1dcea3          77 LQQSAAIQPLVSCPRLVLLNLQGN  100 (124)
T ss_dssp             CCSSSTTGGGGGCTTCCEEECTTS
T ss_pred             cCCCCCchhhcCCCCCCEEECCCC
Confidence            44331 123444555555555555

>d1dcea3 c.10.2.2 (A:444-567) Rab geranylgeranyltransferase alpha-subunit, C-terminal domain {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Rab geranylgeranyltransferase alpha-subunit, C-terminal domain
domain: Rab geranylgeranyltransferase alpha-subunit, C-terminal domain
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=99.23  E-value=5.5e-12  Score=94.44  Aligned_cols=117  Identities=21%  Similarity=0.263  Sum_probs=62.9

Q ss_pred             EEeccCCCCChhhHHHhhCCCCCcEEecccCCCCchHHHhhhCCCCCcEEEccCCCCCHHHHHHHhcCCCCCEeecCCCC
Q 012186          304 CLELSDTQVGSSGLRHLSGLTNLESINLSFTGISDGSLRKLAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLFGAR  383 (469)
Q Consensus       304 ~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~  383 (469)
                      .|++++|.+....  .++.+++|++|++++|.+.+. +..++.+++|+.|++++|.++..  ..+..+++|++|++++|+
T Consensus         2 ~L~Ls~n~l~~l~--~l~~l~~L~~L~ls~N~l~~l-p~~~~~l~~L~~L~l~~N~i~~l--~~~~~l~~L~~L~l~~N~   76 (124)
T d1dcea3           2 VLHLAHKDLTVLC--HLEQLLLVTHLDLSHNRLRAL-PPALAALRCLEVLQASDNALENV--DGVANLPRLQELLLCNNR   76 (124)
T ss_dssp             EEECTTSCCSSCC--CGGGGTTCCEEECCSSCCCCC-CGGGGGCTTCCEEECCSSCCCCC--GGGTTCSSCCEEECCSSC
T ss_pred             EEEcCCCCCCCCc--ccccCCCCCEEECCCCccCcc-hhhhhhhhccccccccccccccc--CccccccccCeEECCCCc
Confidence            4555555554322  245555666666666655543 23455566666666666666553  235566666666666666


Q ss_pred             CChhH-HHHhHcCCCCCeeeeCCCCCCHHH---HHHHhcCCCCCee
Q 012186          384 ITDSG-AAYLRNFKNLRSLEICGGGLTDAG---VKHIKDLSSLTLL  425 (469)
Q Consensus       384 ~~~~~-~~~~~~~~~L~~L~l~~~~~~~~~---~~~l~~~~~L~~L  425 (469)
                      +++.. ...+..+++|+.|++++|.++...   ......+|+|+.|
T Consensus        77 i~~~~~~~~l~~~~~L~~L~l~~N~i~~~~~~~~~l~~~lp~L~~L  122 (124)
T d1dcea3          77 LQQSAAIQPLVSCPRLVLLNLQGNSLCQEEGIQERLAEMLPSVSSI  122 (124)
T ss_dssp             CCSSSTTGGGGGCTTCCEEECTTSGGGGSSSCTTHHHHHCTTCSEE
T ss_pred             cCCCCCchhhcCCCCCCEEECCCCcCCcCccHHHHHHHHCcCcceE
Confidence            65432 234556666666666666654321   1222345665554

>d1m9la_ c.10.3.1 (A:) Outer arm dynein light chain 1 {Green algae (Chlamydomonas reinhardtii) [TaxId: 3055]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: Outer arm dynein light chain 1
family: Outer arm dynein light chain 1
domain: Outer arm dynein light chain 1
species: Green algae (Chlamydomonas reinhardtii) [TaxId: 3055]

Probab=99.18  E-value=4.5e-13  Score=109.76  Aligned_cols=132  Identities=23%  Similarity=0.274  Sum_probs=67.4

Q ss_pred             HhhCCCCCcEEecccCCCCchHHHhhhCCCCCcEEEccCCCCCHHHHHHHhcCCCCCEeecCCCCCChhHHHHhHcCCCC
Q 012186          319 HLSGLTNLESINLSFTGISDGSLRKLAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLFGARITDSGAAYLRNFKNL  398 (469)
Q Consensus       319 ~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L  398 (469)
                      .+..+++|+.|++++|.+.+.  ..+..+++|+.|++++|.++... .....+++|+.|++++|.++..  ..+..+++|
T Consensus        43 sl~~L~~L~~L~Ls~n~I~~i--~~l~~l~~L~~L~Ls~N~i~~i~-~~~~~~~~L~~L~l~~N~i~~l--~~~~~l~~L  117 (198)
T d1m9la_          43 TLSTLKACKHLALSTNNIEKI--SSLSGMENLRILSLGRNLIKKIE-NLDAVADTLEELWISYNQIASL--SGIEKLVNL  117 (198)
T ss_dssp             HHHHTTTCCEEECSEEEESCC--CCHHHHTTCCEEECCEEEECSCS-SHHHHHHHCCEEECSEEECCCH--HHHHHHHHS
T ss_pred             HHhcccccceeECcccCCCCc--ccccCCccccChhhccccccccc-cccccccccccccccccccccc--ccccccccc
Confidence            344555555555555544432  12444555555555555554321 1122234566666666665553  234455666


Q ss_pred             CeeeeCCCCCCHHHH-HHHhcCCCCCeeeccCCCCCChhH----------HHHHHhCcccccccccCCCCC
Q 012186          399 RSLEICGGGLTDAGV-KHIKDLSSLTLLNLSQNCNLTDKT----------LELISGLTGLVSLNVSNSRIT  458 (469)
Q Consensus       399 ~~L~l~~~~~~~~~~-~~l~~~~~L~~L~l~~~~~l~~~~----------~~~l~~l~~L~~L~l~~~~~~  458 (469)
                      +.|++++|.++.... ..+..+++|+.|++++|+ +....          ...+..+|+|+.||  +.+++
T Consensus       118 ~~L~L~~N~i~~~~~~~~l~~l~~L~~L~L~~N~-l~~~~~~~~~~~~~r~~vi~~lp~L~~LD--~~~I~  185 (198)
T d1m9la_         118 RVLYMSNNKITNWGEIDKLAALDKLEDLLLAGNP-LYNDYKENNATSEYRIEVVKRLPNLKKLD--GMPVD  185 (198)
T ss_dssp             SEEEESEEECCCHHHHHHHTTTTTCSEEEECSSH-HHHHHCTTTTHHHHHHHHHHHCSSCCEES--SGGGT
T ss_pred             cccccccchhccccccccccCCCccceeecCCCc-cccCcccccchhhHHHHHHHHCCCcCEeC--CccCC
Confidence            666666666655422 345566666666666662 22111          11255677777766  44444

>d1m9la_ c.10.3.1 (A:) Outer arm dynein light chain 1 {Green algae (Chlamydomonas reinhardtii) [TaxId: 3055]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: Outer arm dynein light chain 1
family: Outer arm dynein light chain 1
domain: Outer arm dynein light chain 1
species: Green algae (Chlamydomonas reinhardtii) [TaxId: 3055]

Probab=99.09  E-value=1.6e-12  Score=106.50  Aligned_cols=126  Identities=26%  Similarity=0.296  Sum_probs=64.0

Q ss_pred             hhCCCCCCEEeccCCCCChhhHHHhhCCCCCcEEecccCCCCchHHHhhhCCCCCcEEEccCCCCCHHHHHHHhcCCCCC
Q 012186          296 LTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISDGSLRKLAGLSSLKSLNLDARQITDTGLAALTSLTGLT  375 (469)
Q Consensus       296 ~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~  375 (469)
                      +..+++|++|++++|.+....  .+..+++|+.|++++|.+.+.. .....+++|+.|++++|.++..  ..+..+++|+
T Consensus        44 l~~L~~L~~L~Ls~n~I~~i~--~l~~l~~L~~L~Ls~N~i~~i~-~~~~~~~~L~~L~l~~N~i~~l--~~~~~l~~L~  118 (198)
T d1m9la_          44 LSTLKACKHLALSTNNIEKIS--SLSGMENLRILSLGRNLIKKIE-NLDAVADTLEELWISYNQIASL--SGIEKLVNLR  118 (198)
T ss_dssp             HHHTTTCCEEECSEEEESCCC--CHHHHTTCCEEECCEEEECSCS-SHHHHHHHCCEEECSEEECCCH--HHHHHHHHSS
T ss_pred             HhcccccceeECcccCCCCcc--cccCCccccChhhccccccccc-cccccccccccccccccccccc--cccccccccc
Confidence            444445555555554443321  2444555555555555443321 1112224566666666665543  2344555666


Q ss_pred             EeecCCCCCChhHH-HHhHcCCCCCeeeeCCCCCCHHHH----------HHHhcCCCCCeee
Q 012186          376 HLDLFGARITDSGA-AYLRNFKNLRSLEICGGGLTDAGV----------KHIKDLSSLTLLN  426 (469)
Q Consensus       376 ~L~l~~~~~~~~~~-~~~~~~~~L~~L~l~~~~~~~~~~----------~~l~~~~~L~~L~  426 (469)
                      .|++++|++++... ..+..+++|+.|++++|.+....+          ..+..+|+|+.||
T Consensus       119 ~L~L~~N~i~~~~~~~~l~~l~~L~~L~L~~N~l~~~~~~~~~~~~~r~~vi~~lp~L~~LD  180 (198)
T d1m9la_         119 VLYMSNNKITNWGEIDKLAALDKLEDLLLAGNPLYNDYKENNATSEYRIEVVKRLPNLKKLD  180 (198)
T ss_dssp             EEEESEEECCCHHHHHHHTTTTTCSEEEECSSHHHHHHCTTTTHHHHHHHHHHHCSSCCEES
T ss_pred             ccccccchhccccccccccCCCccceeecCCCccccCcccccchhhHHHHHHHHCCCcCEeC
Confidence            66666666655332 345556666666666665443221          1245678888876

>d2ifga3 c.10.2.7 (A:36-191) High affinity nerve growth factor receptor, N-terminal domain {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: High affinity nerve growth factor receptor, N-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.91  E-value=2.8e-10  Score=88.78  Aligned_cols=85  Identities=21%  Similarity=0.232  Sum_probs=38.9

Q ss_pred             hCCCCCcEEEccCC-CCCHHHHHHHhcCCCCCEeecCCCCCChhHHHHhHcCCCCCeeeeCCCCCCHHHHHHHhcCCCCC
Q 012186          345 AGLSSLKSLNLDAR-QITDTGLAALTSLTGLTHLDLFGARITDSGAAYLRNFKNLRSLEICGGGLTDAGVKHIKDLSSLT  423 (469)
Q Consensus       345 ~~~~~L~~L~l~~~-~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~  423 (469)
                      ..+++|++|++.++ .++......|.++++|+.|++++|+++.+.+.+|..+++|+.|++++|+++...+..+. ..+|+
T Consensus        28 ~~l~~l~~L~l~~n~~l~~i~~~~f~~l~~L~~L~Ls~N~l~~i~~~~f~~l~~L~~L~Ls~N~l~~l~~~~~~-~~~l~  106 (156)
T d2ifga3          28 PGAENLTELYIENQQHLQHLELRDLRGLGELRNLTIVKSGLRFVAPDAFHFTPRLSRLNLSFNALESLSWKTVQ-GLSLQ  106 (156)
T ss_dssp             CSCSCCSEEECCSCSSCCEECGGGSCSCCCCSEEECCSSCCCEECTTGGGSCSCCCEEECCSSCCSCCCSTTTC-SCCCC
T ss_pred             cCccccCeeecCCCccccccCchhhccccccCcceeeccccCCcccccccccccccceeccCCCCcccChhhhc-ccccc
Confidence            33444444444432 24443334444445555555555555444444444555555555555555443332222 22455


Q ss_pred             eeeccCC
Q 012186          424 LLNLSQN  430 (469)
Q Consensus       424 ~L~l~~~  430 (469)
                      +|+|++|
T Consensus       107 ~L~L~~N  113 (156)
T d2ifga3         107 ELVLSGN  113 (156)
T ss_dssp             EEECCSS
T ss_pred             ccccCCC
Confidence            5555555

>d2ifga3 c.10.2.7 (A:36-191) High affinity nerve growth factor receptor, N-terminal domain {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: High affinity nerve growth factor receptor, N-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.80  E-value=1.1e-08  Score=79.48  Aligned_cols=68  Identities=24%  Similarity=0.247  Sum_probs=30.4

Q ss_pred             ccCCCCccEEEccCCCCCChhhhhcccCCCCCCEEEecccccChhhhhhccCCCCCCeeeccCCCCch
Q 012186          151 LKGLMKLESLNIKWCNCITDSDMKPLSGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTA  218 (469)
Q Consensus       151 l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~  218 (469)
                      +..+++|++|++.+++.++.....++.++++|+.|++++|.++......|..+++|++|++++|.++.
T Consensus        27 l~~l~~l~~L~l~~n~~l~~i~~~~f~~l~~L~~L~Ls~N~l~~i~~~~f~~l~~L~~L~Ls~N~l~~   94 (156)
T d2ifga3          27 LPGAENLTELYIENQQHLQHLELRDLRGLGELRNLTIVKSGLRFVAPDAFHFTPRLSRLNLSFNALES   94 (156)
T ss_dssp             SCSCSCCSEEECCSCSSCCEECGGGSCSCCCCSEEECCSSCCCEECTTGGGSCSCCCEEECCSSCCSC
T ss_pred             ccCccccCeeecCCCccccccCchhhccccccCcceeeccccCCcccccccccccccceeccCCCCcc
Confidence            34444444444443333443333444444444444444444444444444444444444444444443

>d1pgva_ c.10.1.1 (A:) Tropomodulin C-terminal domain {nematode (Caenorhabditis elegans) [TaxId: 6239]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: 28-residue LRR
domain: Tropomodulin C-terminal domain
species: nematode (Caenorhabditis elegans) [TaxId: 6239]

Probab=98.42  E-value=1.3e-06  Score=68.35  Aligned_cols=65  Identities=17%  Similarity=0.258  Sum_probs=28.6

Q ss_pred             CCCCCcEEecccC-CCCchHHH----hhhCCCCCcEEEccCCCCCHHHH----HHHhcCCCCCEeecCCCCCCh
Q 012186          322 GLTNLESINLSFT-GISDGSLR----KLAGLSSLKSLNLDARQITDTGL----AALTSLTGLTHLDLFGARITD  386 (469)
Q Consensus       322 ~~~~L~~L~l~~~-~~~~~~~~----~~~~~~~L~~L~l~~~~~~~~~~----~~l~~~~~L~~L~l~~~~~~~  386 (469)
                      +.++|+.|+++++ .+++....    .+...+.|++|++++|.+.....    ..+...+.|++|++++|.+++
T Consensus        13 n~~~L~~L~L~~~~~i~~~~~~~l~~~L~~n~~L~~L~Ls~n~l~~~~~~~la~~L~~n~~L~~L~L~~n~i~~   86 (167)
T d1pgva_          13 DDTDLKEVNINNMKRVSKERIRSLIEAACNSKHIEKFSLANTAISDSEARGLIELIETSPSLRVLNVESNFLTP   86 (167)
T ss_dssp             TCSSCCEEECTTCCSSCHHHHHHHHHHHTTCSCCCEEECTTSCCBHHHHTTHHHHHHHCSSCCEEECCSSBCCH
T ss_pred             CCCCCcEEEeCCCCCCCHHHHHHHHHHHhhCCccceeeccccccchhHHHHHhhhhhhcccccceeeehhhcch
Confidence            3455566665543 34433222    22334455555555555543322    122233444444444444444

>d1pgva_ c.10.1.1 (A:) Tropomodulin C-terminal domain {nematode (Caenorhabditis elegans) [TaxId: 6239]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: 28-residue LRR
domain: Tropomodulin C-terminal domain
species: nematode (Caenorhabditis elegans) [TaxId: 6239]

Probab=98.25  E-value=6.3e-06  Score=64.33  Aligned_cols=64  Identities=22%  Similarity=0.237  Sum_probs=38.1

Q ss_pred             hCCCCCcEEecccCCCCchHH----HhhhCCCCCcEEEccCCCCCHHHHHH----HhcCCCCCEeecCCCCC
Q 012186          321 SGLTNLESINLSFTGISDGSL----RKLAGLSSLKSLNLDARQITDTGLAA----LTSLTGLTHLDLFGARI  384 (469)
Q Consensus       321 ~~~~~L~~L~l~~~~~~~~~~----~~~~~~~~L~~L~l~~~~~~~~~~~~----l~~~~~L~~L~l~~~~~  384 (469)
                      ...+.|+.|++++|.+.+...    ..+...+.|+.|++++|.++..+...    +...+.|++|++++|.+
T Consensus        41 ~~n~~L~~L~Ls~n~l~~~~~~~la~~L~~n~~L~~L~L~~n~i~~~g~~~l~~aL~~n~sL~~L~l~~n~~  112 (167)
T d1pgva_          41 CNSKHIEKFSLANTAISDSEARGLIELIETSPSLRVLNVESNFLTPELLARLLRSTLVTQSIVEFKADNQRQ  112 (167)
T ss_dssp             TTCSCCCEEECTTSCCBHHHHTTHHHHHHHCSSCCEEECCSSBCCHHHHHHHHHHTTTTCCCSEEECCCCSS
T ss_pred             hhCCccceeeccccccchhHHHHHhhhhhhcccccceeeehhhcchHHHHHHHHHHHhCCcCCEEECCCCcC
Confidence            344556666666665554333    33345677888888887777665443    33456677777766643

>d1io0a_ c.10.1.1 (A:) Tropomodulin C-terminal domain {Chicken (Gallus gallus) [TaxId: 9031]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: 28-residue LRR
domain: Tropomodulin C-terminal domain
species: Chicken (Gallus gallus) [TaxId: 9031]

Probab=98.23  E-value=1.1e-05  Score=62.96  Aligned_cols=67  Identities=22%  Similarity=0.219  Sum_probs=33.8

Q ss_pred             hCCCCCcEEeccc-CCCCchHHHh----hhCCCCCcEEEccCCCCCHHHHHHH----hcCCCCCEeecCCCCCChh
Q 012186          321 SGLTNLESINLSF-TGISDGSLRK----LAGLSSLKSLNLDARQITDTGLAAL----TSLTGLTHLDLFGARITDS  387 (469)
Q Consensus       321 ~~~~~L~~L~l~~-~~~~~~~~~~----~~~~~~L~~L~l~~~~~~~~~~~~l----~~~~~L~~L~l~~~~~~~~  387 (469)
                      .+.|+|++|++++ +.++......    +...++|++|++++|.++......+    ...+.++.+++.+|.+.+.
T Consensus        14 ~~~~~L~~L~L~~~~~i~~~~~~~l~~al~~n~~L~~L~Ls~n~l~~~~~~~L~~~l~~~~~l~~l~l~~~~~~~~   89 (166)
T d1io0a_          14 NNDPDLEEVNLNNIMNIPVPTLKACAEALKTNTYVKKFSIVGTRSNDPVAFALAEMLKVNNTLKSLNVESNFISGS   89 (166)
T ss_dssp             TTCTTCCEEECTTCTTCCHHHHHHHHHHHTTCCSCCEEECTTSCCCHHHHHHHHHHHHHCSSCCEEECCSSCCCHH
T ss_pred             hcCCCCcEEEcCCCCCCCHHHHHHHHHHHhcCCccCeeeccCCcccHHHHHHHHHHHhhcccchhhhhccccccch
Confidence            3556666666665 3454443332    2345566666666666555433322    2345555555555555443

>d1io0a_ c.10.1.1 (A:) Tropomodulin C-terminal domain {Chicken (Gallus gallus) [TaxId: 9031]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: 28-residue LRR
domain: Tropomodulin C-terminal domain
species: Chicken (Gallus gallus) [TaxId: 9031]

Probab=98.13  E-value=2.2e-05  Score=61.16  Aligned_cols=112  Identities=21%  Similarity=0.279  Sum_probs=50.7

Q ss_pred             CCCCCcEEEccC-CCCCHHHHH----HHhcCCCCCEeecCCCCCChhHHH----HhHcCCCCCeeeeCCCCCCHHHHHH-
Q 012186          346 GLSSLKSLNLDA-RQITDTGLA----ALTSLTGLTHLDLFGARITDSGAA----YLRNFKNLRSLEICGGGLTDAGVKH-  415 (469)
Q Consensus       346 ~~~~L~~L~l~~-~~~~~~~~~----~l~~~~~L~~L~l~~~~~~~~~~~----~~~~~~~L~~L~l~~~~~~~~~~~~-  415 (469)
                      +.|.|++|.+++ +.++.....    .+...++|++|++++|.+++....    .+...++++.+++++|.+...+... 
T Consensus        15 ~~~~L~~L~L~~~~~i~~~~~~~l~~al~~n~~L~~L~Ls~n~l~~~~~~~L~~~l~~~~~l~~l~l~~~~~~~~g~~~l   94 (166)
T d1io0a_          15 NDPDLEEVNLNNIMNIPVPTLKACAEALKTNTYVKKFSIVGTRSNDPVAFALAEMLKVNNTLKSLNVESNFISGSGILAL   94 (166)
T ss_dssp             TCTTCCEEECTTCTTCCHHHHHHHHHHHTTCCSCCEEECTTSCCCHHHHHHHHHHHHHCSSCCEEECCSSCCCHHHHHHH
T ss_pred             cCCCCcEEEcCCCCCCCHHHHHHHHHHHhcCCccCeeeccCCcccHHHHHHHHHHHhhcccchhhhhccccccchhHHHH
Confidence            345555555554 344443332    222445555555555555543322    2334455555555555555443322 


Q ss_pred             ---HhcCCCCCeeeccCCC-CCChhH----HHHHHhCcccccccccCCCC
Q 012186          416 ---IKDLSSLTLLNLSQNC-NLTDKT----LELISGLTGLVSLNVSNSRI  457 (469)
Q Consensus       416 ---l~~~~~L~~L~l~~~~-~l~~~~----~~~l~~l~~L~~L~l~~~~~  457 (469)
                         +...++|+.++|+.+. .+....    .+.+...+.|+.|++..++.
T Consensus        95 ~~~l~~~~~L~~l~L~l~~n~i~~~~~~~La~~L~~n~~L~~L~l~~~~~  144 (166)
T d1io0a_          95 VEALQSNTSLIELRIDNQSQPLGNNVEMEIANMLEKNTTLLKFGYHFTQQ  144 (166)
T ss_dssp             HHGGGGCSSCCEEECCCCSSCCCHHHHHHHHHHHHHCSSCCEEECCCSSH
T ss_pred             HHHHHhCccccEEeeccCCCcCcHHHHHHHHHHHHhCCCcCEEeCcCCCC
Confidence               2334555544443221 333322    22333455555555554443

>d1koha1 c.10.2.3 (A:201-362) mRNA export factor tap {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: mRNA export factor tap
domain: mRNA export factor tap
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.11  E-value=1.6e-06  Score=67.50  Aligned_cols=82  Identities=21%  Similarity=0.247  Sum_probs=46.9

Q ss_pred             hcCCCCCEeecCCCCCChhH--HHHhHcCCCCCeeeeCCCCCCHHHHHHHhcCCCCCeeeccCCCCCChh-------HHH
Q 012186          369 TSLTGLTHLDLFGARITDSG--AAYLRNFKNLRSLEICGGGLTDAGVKHIKDLSSLTLLNLSQNCNLTDK-------TLE  439 (469)
Q Consensus       369 ~~~~~L~~L~l~~~~~~~~~--~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~l~~~-------~~~  439 (469)
                      ..+++|++|++++|+++...  +..+..+++|+.|++++|.++............|+.|++++|+ +...       ...
T Consensus        62 ~~~~~L~~L~Ls~N~i~~l~~~~~~~~~l~~L~~L~Ls~N~i~~l~~l~~l~~~~L~~L~L~~Np-l~~~~~~~~~y~~~  140 (162)
T d1koha1          62 ENIPELLSLNLSNNRLYRLDDMSSIVQKAPNLKILNLSGNELKSERELDKIKGLKLEELWLDGNS-LSDTFRDQSTYISA  140 (162)
T ss_dssp             HHCTTCCCCCCCSSCCCCCSGGGTHHHHSTTCCCCCCTTSCCCCGGGHHHHTTCCCSSCCCTTST-TSSSSSSHHHHHHH
T ss_pred             HhCCCCCEeeCCCccccCCchhHHHHhhCCcccccccccCccccchhhhhhhccccceeecCCCC-cCcCcccchhHHHH
Confidence            35666666666666666432  3345566777777777777665443333344567777777773 3221       112


Q ss_pred             HHHhCccccccc
Q 012186          440 LISGLTGLVSLN  451 (469)
Q Consensus       440 ~l~~l~~L~~L~  451 (469)
                      .+..+|+|+.||
T Consensus       141 i~~~~P~L~~LD  152 (162)
T d1koha1         141 IRERFPKLLRLD  152 (162)
T ss_dssp             HHTTSTTCCEET
T ss_pred             HHHHCCCCCEEC
Confidence            344567777665

>d1koha1 c.10.2.3 (A:201-362) mRNA export factor tap {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: mRNA export factor tap
domain: mRNA export factor tap
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.97  E-value=3.2e-06  Score=65.70  Aligned_cols=81  Identities=20%  Similarity=0.194  Sum_probs=42.7

Q ss_pred             CCCCCcEEEccCCCCCHHH--HHHHhcCCCCCEeecCCCCCChhHHHHhHcCCCCCeeeeCCCCCCHH-------HHHHH
Q 012186          346 GLSSLKSLNLDARQITDTG--LAALTSLTGLTHLDLFGARITDSGAAYLRNFKNLRSLEICGGGLTDA-------GVKHI  416 (469)
Q Consensus       346 ~~~~L~~L~l~~~~~~~~~--~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~-------~~~~l  416 (469)
                      .+++|+.|++++|.++...  ...+..+++|+.|++++|.+++...-.......|+.|++++|.+...       ....+
T Consensus        63 ~~~~L~~L~Ls~N~i~~l~~~~~~~~~l~~L~~L~Ls~N~i~~l~~l~~l~~~~L~~L~L~~Npl~~~~~~~~~y~~~i~  142 (162)
T d1koha1          63 NIPELLSLNLSNNRLYRLDDMSSIVQKAPNLKILNLSGNELKSERELDKIKGLKLEELWLDGNSLSDTFRDQSTYISAIR  142 (162)
T ss_dssp             HCTTCCCCCCCSSCCCCCSGGGTHHHHSTTCCCCCCTTSCCCCGGGHHHHTTCCCSSCCCTTSTTSSSSSSHHHHHHHHH
T ss_pred             hCCCCCEeeCCCccccCCchhHHHHhhCCcccccccccCccccchhhhhhhccccceeecCCCCcCcCcccchhHHHHHH
Confidence            3455555555555555421  23344566666666666666654332333344566666666665421       11234


Q ss_pred             hcCCCCCeee
Q 012186          417 KDLSSLTLLN  426 (469)
Q Consensus       417 ~~~~~L~~L~  426 (469)
                      ..+|+|+.||
T Consensus       143 ~~~P~L~~LD  152 (162)
T d1koha1         143 ERFPKLLRLD  152 (162)
T ss_dssp             TTSTTCCEET
T ss_pred             HHCCCCCEEC
Confidence            5577777764