Citrus Sinensis ID: 012193
Local Sequence Feature Prediction
| Prediction and (Method) | Result |
|---|
Close Homologs for Annotation Transfer
Close Homologs in the Non-Redundant Database Detected by BLAST 
Original result of BLAST against Nonredundant Database
GI ![]() | Alignment Graph ![]() | Length ![]() |
Definition ![]() |
Q cover ![]() |
H cover ![]() |
Identity ![]() |
E-value ![]() |
| Query | 468 | ||||||
| 356505035 | 687 | PREDICTED: dolichyl-diphosphooligosaccha | 0.993 | 0.676 | 0.725 | 0.0 | |
| 356572268 | 688 | PREDICTED: dolichyl-diphosphooligosaccha | 0.995 | 0.677 | 0.716 | 0.0 | |
| 449443532 | 679 | PREDICTED: dolichyl-diphosphooligosaccha | 0.970 | 0.668 | 0.716 | 0.0 | |
| 359480291 | 690 | PREDICTED: dolichyl-diphosphooligosaccha | 0.995 | 0.675 | 0.763 | 0.0 | |
| 297744165 | 756 | unnamed protein product [Vitis vinifera] | 0.995 | 0.616 | 0.763 | 0.0 | |
| 224062133 | 694 | predicted protein [Populus trichocarpa] | 0.993 | 0.670 | 0.727 | 0.0 | |
| 356537059 | 689 | PREDICTED: dolichyl-diphosphooligosaccha | 0.993 | 0.674 | 0.720 | 0.0 | |
| 255577958 | 699 | ribophorin II, putative [Ricinus communi | 0.985 | 0.659 | 0.713 | 0.0 | |
| 22328844 | 691 | ribophorin II (RPN2) family protein [Ara | 0.991 | 0.671 | 0.673 | 0.0 | |
| 297804040 | 693 | ribophorin II family protein [Arabidopsi | 0.993 | 0.670 | 0.670 | 0.0 |
| >gi|356505035|ref|XP_003521298.1| PREDICTED: dolichyl-diphosphooligosaccharide--protein glycosyltransferase subunit 2-like [Glycine max] | Back alignment and taxonomy information |
|---|
Score = 700 bits (1806), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 338/466 (72%), Positives = 399/466 (85%), Gaps = 1/466 (0%)
Query: 3 NDGTFYFDEKLVNMREQQGPLATTSSVVRGLTAFSSVITESLNLTGDKILGIAKFFLGIG 62
+DGTFYFDEK V RE QG L+TTSSVVRG+TAF++V + +NL GDKILG+A FFLGIG
Sbjct: 223 DDGTFYFDEKFVGGREHQGSLSTTSSVVRGVTAFAAVTSGKINLPGDKILGLANFFLGIG 282
Query: 63 IPGDTKNFFDQVDSLACLENNRVSIPLILSLPSTVISLTKKDSLKVKVNTVLGSHAPPLT 122
IPGD K+FF+QV+SLA LENN+VSIPL+LSLP+TV SL+KKD LKV+VNTVLGS APPLT
Sbjct: 283 IPGDAKDFFNQVESLALLENNKVSIPLVLSLPATVYSLSKKDQLKVRVNTVLGSAAPPLT 342
Query: 123 VTLVRAFSSSARDNSIIENQELKFDPQDAVYFLDDLPASFDVGEYIFVFKMLVQDSEQQT 182
V LV+AF S+A+D S IE++EL++D + ++FL+ P + DVG Y+FVF++ + DS +
Sbjct: 343 VKLVQAFRSNAKD-SAIESKELQYDQNNGIHFLEAFPDNVDVGTYVFVFEIALHDSAGEK 401
Query: 183 VYATGTLTQVPIYVTGLIKIENAKIAVLDSDLGSVETQKKLDLAGESTVSVSANHLQKLR 242
VYATG VPIYVTG+IK+ NA+IAVLDSDLGSVETQK LDLAG VS+SANHLQKLR
Sbjct: 402 VYATGGQIHVPIYVTGIIKVSNAEIAVLDSDLGSVETQKTLDLAGNDDVSLSANHLQKLR 461
Query: 243 LSFQMSTPLGNAFKPHQAFLRLRHETKVEHTFVVGSSGKKFEITLDFLGLVEKFFYLSGR 302
SFQ++TP G+AFKPHQAF +L+HETK EH FVVG++G+KFEI LDFLGLVEKF+YLSGR
Sbjct: 462 FSFQLTTPHGHAFKPHQAFFKLKHETKHEHIFVVGNTGRKFEIILDFLGLVEKFYYLSGR 521
Query: 303 YDIQLTVGDAVMENSLLRDIGYVELDLPEPPENASRPPPQPVDPYTRYGPKAEITHIFRA 362
YDI+LTVGD VMENS LR +G V+LDLPE PE A+R PP PVDPY+RYGPKAEI H+FRA
Sbjct: 522 YDIELTVGDTVMENSFLRLLGEVDLDLPEAPEKAARLPPLPVDPYSRYGPKAEIAHLFRA 581
Query: 363 PEKRPPQELSLAFLVLTILPLFGFIIGLLRLGVNLKNFPTSAVPATFAVIFHLGIAAVLL 422
PEKRPPQELSL FL L +LP GF++GLLRLGVNLKNFP+SAVPAT+A +FHLGIAAVLL
Sbjct: 582 PEKRPPQELSLTFLGLILLPFIGFLVGLLRLGVNLKNFPSSAVPATYAFLFHLGIAAVLL 641
Query: 423 LYVLFWLKLDLFTTLKTLCFLGVFLMVVGHRTLSHLASASAKLKSA 468
LYVLFWLKLDLFTTLKT+ FLG FL+ VGHR LSHLAS S+KLKSA
Sbjct: 642 LYVLFWLKLDLFTTLKTVGFLGAFLLFVGHRILSHLASTSSKLKSA 687
|
Source: Glycine max Species: Glycine max Genus: Glycine Family: Fabaceae Order: Fabales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|356572268|ref|XP_003554291.1| PREDICTED: dolichyl-diphosphooligosaccharide--protein glycosyltransferase subunit 2-like [Glycine max] | Back alignment and taxonomy information |
|---|
| >gi|449443532|ref|XP_004139531.1| PREDICTED: dolichyl-diphosphooligosaccharide--protein glycosyltransferase subunit 2-like [Cucumis sativus] gi|449508984|ref|XP_004163460.1| PREDICTED: dolichyl-diphosphooligosaccharide--protein glycosyltransferase subunit 2-like [Cucumis sativus] | Back alignment and taxonomy information |
|---|
| >gi|359480291|ref|XP_002272576.2| PREDICTED: dolichyl-diphosphooligosaccharide--protein glycosyltransferase subunit 2-like [Vitis vinifera] | Back alignment and taxonomy information |
|---|
| >gi|297744165|emb|CBI37135.3| unnamed protein product [Vitis vinifera] | Back alignment and taxonomy information |
|---|
| >gi|224062133|ref|XP_002300771.1| predicted protein [Populus trichocarpa] gi|222842497|gb|EEE80044.1| predicted protein [Populus trichocarpa] | Back alignment and taxonomy information |
|---|
| >gi|356537059|ref|XP_003537048.1| PREDICTED: dolichyl-diphosphooligosaccharide--protein glycosyltransferase subunit 2-like [Glycine max] | Back alignment and taxonomy information |
|---|
| >gi|255577958|ref|XP_002529851.1| ribophorin II, putative [Ricinus communis] gi|223530679|gb|EEF32552.1| ribophorin II, putative [Ricinus communis] | Back alignment and taxonomy information |
|---|
| >gi|22328844|ref|NP_193847.2| ribophorin II (RPN2) family protein [Arabidopsis thaliana] gi|334186764|ref|NP_001190785.1| ribophorin II (RPN2) family protein [Arabidopsis thaliana] gi|75163691|sp|Q93Z16.1|RPN2_ARATH RecName: Full=Dolichyl-diphosphooligosaccharide--protein glycosyltransferase subunit 2; AltName: Full=Protein HAPLESS 6; AltName: Full=Ribophorin II; Short=RPN-II; AltName: Full=Ribophorin-2; Flags: Precursor gi|16604454|gb|AAL24233.1| AT4g21150/F7J7_90 [Arabidopsis thaliana] gi|18958022|gb|AAL79584.1| AT4g21150/F7J7_90 [Arabidopsis thaliana] gi|332659008|gb|AEE84408.1| ribophorin II (RPN2) family protein [Arabidopsis thaliana] gi|332659010|gb|AEE84410.1| ribophorin II (RPN2) family protein [Arabidopsis thaliana] | Back alignment and taxonomy information |
|---|
| >gi|297804040|ref|XP_002869904.1| ribophorin II family protein [Arabidopsis lyrata subsp. lyrata] gi|297315740|gb|EFH46163.1| ribophorin II family protein [Arabidopsis lyrata subsp. lyrata] | Back alignment and taxonomy information |
|---|
Prediction of Gene Ontology (GO) Terms
Close Homologs with Gene Ontology terms Detected by BLAST 
Original result of BLAST against Gene Ontology (AMIGO)
ID ![]() |
Alignment graph ![]() |
Length ![]() |
Definition ![]() |
Q cover ![]() |
H cover ![]() |
Identity ![]() |
E-value ![]() |
| Query | 468 | ||||||
| TAIR|locus:2127328 | 691 | HAP6 "HAPLESS 6" [Arabidopsis | 0.961 | 0.651 | 0.581 | 6.7e-136 | |
| UNIPROTKB|P04844 | 631 | RPN2 "Dolichyl-diphosphooligos | 0.705 | 0.522 | 0.268 | 2.7e-20 | |
| UNIPROTKB|F1PBH2 | 562 | RPN2 "Uncharacterized protein" | 0.705 | 0.587 | 0.265 | 6.1e-20 | |
| UNIPROTKB|F1PCT7 | 647 | RPN2 "Uncharacterized protein" | 0.705 | 0.510 | 0.265 | 8.6e-20 | |
| FB|FBgn0034277 | 634 | OstDelta "Oligosaccharide tran | 0.841 | 0.621 | 0.245 | 4.3e-19 | |
| UNIPROTKB|Q3SZI6 | 631 | RPN2 "Dolichyl-diphosphooligos | 0.705 | 0.522 | 0.262 | 5.6e-19 | |
| ZFIN|ZDB-GENE-030131-7928 | 643 | rpn2 "ribophorin II" [Danio re | 0.707 | 0.514 | 0.254 | 9.9e-19 | |
| MGI|MGI:98085 | 631 | Rpn2 "ribophorin II" [Mus musc | 0.705 | 0.522 | 0.262 | 4.8e-18 | |
| UNIPROTKB|D4A8V6 | 612 | Rpn2 "Dolichyl-diphosphooligos | 0.705 | 0.539 | 0.262 | 6e-18 | |
| UNIPROTKB|E1C8Z0 | 631 | RPN2 "Dolichyl-diphosphooligos | 0.702 | 0.521 | 0.261 | 6.4e-18 |
| TAIR|locus:2127328 HAP6 "HAPLESS 6" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 1331 (473.6 bits), Expect = 6.7e-136, P = 6.7e-136
Identities = 263/452 (58%), Positives = 331/452 (73%)
Query: 3 NDGTFYFDEKLVNMREQQGPLATTSSVVRGLTAFSSVITESLNLTGDKILGIAKFFLGIG 62
+DGTFYFDEK V+ QGP++TT+SV+RGLT+F++ + LNL GDKI+G+AKFFLG+G
Sbjct: 228 DDGTFYFDEKSVDA--SQGPISTTASVIRGLTSFAASESTGLNLPGDKIVGLAKFFLGVG 285
Query: 63 IPGDTKNFFDQVDSLACLENNRVSIPLILSLPSTVISLTKKDSLKVKVNTVLGSHAPPLT 122
IPGD K+FF+Q+D+LACLE+N+ S+PLILSLPSTVISLTKK+ LKVKV+TVLGS AP L+
Sbjct: 286 IPGDAKDFFNQIDALACLEDNKFSVPLILSLPSTVISLTKKEPLKVKVSTVLGSKAPALS 345
Query: 123 VTLVRAFSSSARDNSIIENQELKFDPQDAVYFLDDLPASFDVGEYIFVFKMLVQDSEQQT 182
V L +A SS + D+S+I NQELKFD A YFLD P +FD+G+Y FVFK+++ +S +
Sbjct: 346 VKLTQALSSKSVDSSVINNQELKFDADSATYFLDSFPKNFDIGKYTFVFKIVLDESAHEK 405
Query: 183 VYATGTLTQVPIYVTGLIKIENAKIAVLDSDLGSVETQKKLDLAGESTVSVSANHLQKLR 242
VY T T+VPI TG I IENA+IAVLDSD+GSVE+QKKLDL + VS+SANHLQKLR
Sbjct: 406 VYITEAQTKVPIAATGAISIENAEIAVLDSDIGSVESQKKLDLTKDGAVSLSANHLQKLR 465
Query: 243 LSFQMSTPLGNAFKPHQAFLRLRHETKVEHTFVVGSSGKKFEITLDFLGLVEKFFYLSGR 302
LSFQ++TPLGNAFKPHQAF +L+HE++VEH F+V +SGKK E+ LDFLGLVEK +YLSG+
Sbjct: 466 LSFQLTTPLGNAFKPHQAFFKLKHESQVEHIFLVKTSGKKSELVLDFLGLVEKLYYLSGK 525
Query: 303 YDIQLTVGDAVMENSLLRDIGYVELDLXXXXXXXXXXXXXXVDPYTRYGPKAEITHIFRA 362
Y+IQLT+GDA MENSLL +IG++ELDL +PY+RYGPKAEI+HIFR
Sbjct: 526 YEIQLTIGDASMENSLLSNIGHIELDLPERPEKATRPPLQSTEPYSRYGPKAEISHIFRI 585
Query: 363 PEKRPPQELSLAFLVXXXXXXXXXXXXXXXXXVNLKNFPTSAVPATFAVIFHLGIAAVXX 422
PEK P ++LSL FL VN+K+FP+S A A++FH GI AV
Sbjct: 586 PEKLPAKQLSLVFLGVIVLPFIGFLIGLTRLGVNIKSFPSSTGSAISALLFHCGIGAVLL 645
Query: 423 XXXXXXXXXXXXXXXXXXXXXGVFLMVVGHRT 454
GVFL+ VGHRT
Sbjct: 646 LYVLFWLKLDLFTTLKALSLLGVFLLFVGHRT 677
|
|
| UNIPROTKB|P04844 RPN2 "Dolichyl-diphosphooligosaccharide--protein glycosyltransferase subunit 2" [Homo sapiens (taxid:9606)] | Back alignment and assigned GO terms |
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| UNIPROTKB|F1PBH2 RPN2 "Uncharacterized protein" [Canis lupus familiaris (taxid:9615)] | Back alignment and assigned GO terms |
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| UNIPROTKB|F1PCT7 RPN2 "Uncharacterized protein" [Canis lupus familiaris (taxid:9615)] | Back alignment and assigned GO terms |
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| FB|FBgn0034277 OstDelta "Oligosaccharide transferase Delta subunit" [Drosophila melanogaster (taxid:7227)] | Back alignment and assigned GO terms |
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| UNIPROTKB|Q3SZI6 RPN2 "Dolichyl-diphosphooligosaccharide--protein glycosyltransferase subunit 2" [Bos taurus (taxid:9913)] | Back alignment and assigned GO terms |
|---|
| ZFIN|ZDB-GENE-030131-7928 rpn2 "ribophorin II" [Danio rerio (taxid:7955)] | Back alignment and assigned GO terms |
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| MGI|MGI:98085 Rpn2 "ribophorin II" [Mus musculus (taxid:10090)] | Back alignment and assigned GO terms |
|---|
| UNIPROTKB|D4A8V6 Rpn2 "Dolichyl-diphosphooligosaccharide--protein glycosyltransferase subunit 2" [Rattus norvegicus (taxid:10116)] | Back alignment and assigned GO terms |
|---|
| UNIPROTKB|E1C8Z0 RPN2 "Dolichyl-diphosphooligosaccharide--protein glycosyltransferase subunit 2" [Gallus gallus (taxid:9031)] | Back alignment and assigned GO terms |
|---|
Prediction of Enzyme Commission (EC) Number
EC Number Prediction by Ezypred Server 
Original result from Ezypred Server
Fail to connect to Ezypred Server
Prediction of Functionally Associated Proteins
Functionally Associated Proteins Detected by STRING 
Original result from the STRING server
| estExt_fgenesh4_pm.C_LG_II0174 | hypothetical protein (695 aa) | ||||||||||
(Populus trichocarpa) | |||||||||||
| estExt_fgenesh4_pg.C_LG_X0451 | • | 0.800 |
Conserved Domains and Related Protein Families
Conserved Domains Detected by RPS-BLAST 
Original result of RPS-BLAST against CDD database part I
ID ![]() | Alignment Graph ![]() | Length ![]() |
Definition ![]() |
E-value ![]() |
| Query | 468 | |||
| pfam05817 | 636 | pfam05817, Ribophorin_II, Oligosaccharyltransferas | 1e-175 |
| >gnl|CDD|218763 pfam05817, Ribophorin_II, Oligosaccharyltransferase subunit Ribophorin II | Back alignment and domain information |
|---|
Score = 506 bits (1306), Expect = e-175
Identities = 176/465 (37%), Positives = 262/465 (56%), Gaps = 19/465 (4%)
Query: 1 MVNDGTFYFDEKLVNMREQQGPLATTSSVVRGLTAFSSVITESLNLTGDKILGIAKFFLG 60
+ D DE + + +G L+TT+ VVRG + ++ + ++I+ +A +FL
Sbjct: 188 EIEDLVAQADELDGDYLQFEGGLSTTALVVRGAYKLADHVSTEPPIKEEQIVKLANYFLS 247
Query: 61 IGIPGDTKNFFDQVDSLACLENNRVSIPLILSLPSTVISLTKKDSLKVKVNTVLGSHAPP 120
K+ F +++LA L NN+ +P+++SLP SL ++ LKVKV VLG P
Sbjct: 248 RKSVQSAKDAFSLLEALAVLSNNKFHVPVVVSLPGPAASLHEQPVLKVKVTNVLGKPLSP 307
Query: 121 LTVTLVRAFSSSARDNSIIENQELKFDPQDAVYFLDDLPASFDVGEYIFVFKMLVQDSEQ 180
+V LV+A S + +++ L FD V+ L+ + A G Y FV ++ + +
Sbjct: 308 ASVKLVQAVKSKSTKAAVLSKVNLTFDLDGDVFELNFMSAKPASGYYTFVVEV---EGDH 364
Query: 181 QTVYATGTLTQVPIYVTGLIKIENAKIAVLDSDLGSVETQKKLDLAGESTVSVSANHLQK 240
+ +Y T L + V+G + I+N +++V+D D SV K+D ++ VS+SA+ QK
Sbjct: 365 RYIYNTVELK---VKVSGKVSIDNVELSVVDKDQSSVPKTTKVDYPKKAKVSLSADSHQK 421
Query: 241 LRLSFQM-STPLGNAFKPHQAFLRLRH-ETKVEHTFVVG-SSGKKFEITLDFLGLVEKFF 297
LSFQ+ TP G PHQAF+RL + +TK E FV S K ++ LD E F
Sbjct: 422 FVLSFQLVDTPSGKPLTPHQAFVRLHNQKTKQEIIFVAEPDSSKAYKFELDVGARKEDFG 481
Query: 298 YLSGRYDIQLTVGDAVMENSLLRDIGYVELDLPEPPENASRPPPQPVDPYTRYGPKAEIT 357
LSG Y++ L VGDA +ENS L ++ VEL PE P P V+ + +GPK EI+
Sbjct: 482 SLSGTYELYLIVGDATLENSFLWNVADVELKFPE------EPAPSTVEAKSLFGPKPEIS 535
Query: 358 HIFRAPEKRPPQELSLAFLVLTILPLFGFIIGLLRLGVNLKNFPTSAVPATFAVIFHLGI 417
H+FR PEKRPP +S F L +LPL +I ++LGVN+ NFP S A++FHLG+
Sbjct: 536 HLFREPEKRPPTVVSNTFTALILLPLLLLLILWMKLGVNISNFPFS----PSAILFHLGL 591
Query: 418 AAVLLLYVLFWLKLDLFTTLKTLCFLGVFLMVVGHRTLSHLASAS 462
A+L LY +FWLKL++FTTLK L LGVF + G+R LS +A
Sbjct: 592 GAILGLYYVFWLKLNMFTTLKYLAILGVFTFLAGNRMLSQIAVKR 636
|
This family contains eukaryotic Ribophorin II (RPN2) proteins. The mammalian oligosaccharyltransferase (OST) is a protein complex that effects the cotranslational N-glycosylation of newly synthesised polypeptides, and is composed of the following proteins: ribophorins I and II (RI and RII), OST48, and Dadl, N33/IAP, OST4, STT3. The family also includes the SWP1 protein from yeast. In yeast the oligosaccharyltransferase complex is composed 7 or 8 subunits, SWP1, being one of them. Length = 636 |
Conserved Domains Detected by HHsearch 
Original result of HHsearch against CDD database
ID ![]() | Alignment Graph ![]() | Length ![]() |
Definition ![]() |
Probability ![]() |
| Query | 468 | |||
| PF05817 | 636 | Ribophorin_II: Oligosaccharyltransferase subunit R | 100.0 | |
| KOG2447 | 287 | consensus Oligosaccharyltransferase, delta subunit | 100.0 |
| >PF05817 Ribophorin_II: Oligosaccharyltransferase subunit Ribophorin II; InterPro: IPR008814 This family consists of several eukaryotic Ribophorin II (RPN2) proteins | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.9e-114 Score=939.31 Aligned_cols=445 Identities=38% Similarity=0.614 Sum_probs=420.8
Q ss_pred ccccceeeeccccccccccCCcchhhhhhhhhhhccccccCCCCCChhHHHHHhhhhhccCCCCChhhHHHHHHHHHhhh
Q 012193 2 VNDGTFYFDEKLVNMREQQGPLATTSSVVRGLTAFSSVITESLNLTGDKILGIAKFFLGIGIPGDTKNFFDQVDSLACLE 81 (468)
Q Consensus 2 ~~~~~~~~~~~~~~~~~feggLs~Ta~~v~g~~~l~~~~~k~~~i~~~Q~~~~anyllsr~~~~s~~~a~~~~~al~~l~ 81 (468)
+||+.++.||.....-+|||||++||++|+|+|+|+++++|+|+|++||++||||||||||++|++||||++++||++|+
T Consensus 189 ieD~v~qaDEv~~~~LqFeggLs~TA~vv~g~~~la~~~~k~~~i~~dQivklanylLsrr~v~s~k~a~~l~~al~~L~ 268 (636)
T PF05817_consen 189 IEDAVAQADEVDGKYLQFEGGLSTTALVVRGIYKLADAVGKKPPIKEDQIVKLANYLLSRRSVQSPKDAFNLLEALKSLS 268 (636)
T ss_pred HHHHHHhhhhhcccceeecCCchhhHHHHHHHHHHHHhhCCCCCCCHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHHh
Confidence 68999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cCCeeecEEEEccCceeccccCCceEEEEEeccCCCCCCceEEEEEeEeecCCCceEEeccccccCCCCceEEEcCCCCC
Q 012193 82 NNRVSIPLILSLPSTVISLTKKDSLKVKVNTVLGSHAPPLTVTLVRAFSSSARDNSIIENQELKFDPQDAVYFLDDLPAS 161 (468)
Q Consensus 82 ~n~~~~Pi~~~l~~~~~~~~~~~~l~v~V~~vlg~~l~~~~V~~~~~~~~~~~~~~v~~~~~l~~~~~~~~y~l~~~~~k 161 (468)
+|++++|+|+++++++++.+++|.|+|+|+|+||+|+++++|++++++++.+++++++++++|+++++++.|++|+++.|
T Consensus 269 ~N~~~~Pv~i~l~~~~~~~~~~~~l~v~Vt~vlG~~~~~~~v~~~~a~~s~~~~~~vls~~~l~~~~~~~~~~l~~~~~k 348 (636)
T PF05817_consen 269 SNKFHVPVVISLESSASLSSSKPSLKVRVTNVLGQPLPPLSVKLVSAISSSSDDSVVLSNKPLTFDSDKTVYELDLMSLK 348 (636)
T ss_pred hCCccccEEEEeCCCcccccCCCcEEEEEEeccCCcCCcchhhhhhhhhccCCcceeeccccceecCCCCeEEEecccCC
Confidence 99999999999999999999999999999999999999999999999888888899999999998888889999999999
Q ss_pred CCceeEEEEEEEeecccccceeeeecceeEEEEEEEEEEEEEeeEEEEecCCCCccceeeeeecCCCcceeeecCCcceE
Q 012193 162 FDVGEYIFVFKMLVQDSEQQTVYATGTLTQVPIYVTGLIKIENAKIAVLDSDLGSVETQKKLDLAGESTVSVSANHLQKL 241 (468)
Q Consensus 162 ~~~G~Y~~~~~v~~~d~~~~~~~~~~~~~~~~v~V~~~v~v~~~~~~v~d~d~~~~~~~~~l~~~~kl~~~L~ad~~~~l 241 (468)
+++|+|++++++ . ++ ..+++ .+.+++|||+++|+|++++++|.|+|+++.++++++++++++..+|++|++|++
T Consensus 349 ~~~G~Y~~~~~~-~---~~-~~~~~-~~~~~~vkV~~~v~v~~~~v~v~d~d~~~~~~~~~v~~~~k~~~~l~ad~~~~l 422 (636)
T PF05817_consen 349 PARGYYKFSFSV-S---GD-KRLIG-NTAQLQVKVLGEVSVENAEVSVADSDQSSAPKKTSVDYPSKLSSSLSADSHQKL 422 (636)
T ss_pred CCCceEEEEEEe-c---Cc-cceee-eEEEEEEEEEEEEEEeEEEEEeecCCCCcCcceeeecccccccCCccCCCCceE
Confidence 999999999987 2 12 23333 348899999999999999999999999999999999999999999999999999
Q ss_pred EEEEEEEc-CCCCCCCceeEEEEEEe-CCceEEEEEec-cCCceEEEEEccccchhhhhccCccEEEEEEEecccccCCc
Q 012193 242 RLSFQMST-PLGNAFKPHQAFLRLRH-ETKVEHTFVVG-SSGKKFEITLDFLGLVEKFFYLSGRYDIQLTVGDAVMENSL 318 (468)
Q Consensus 242 ~l~F~l~~-~~g~~~~PhQafl~L~~-~tg~e~~f~vk-~s~k~y~~~ld~~~l~~~f~~~sg~y~v~LivgD~~~~~~~ 318 (468)
+++|+|++ ++|++++||||||||+| ++|+|++|+++ +++++|++++|.++++++|.++||+|+++|||||+.++||+
T Consensus 423 ~l~f~l~~~~~g~~~~phQafl~l~~~~t~~e~~f~~~~~~~~~~k~~l~~~~~~~~f~~~sg~y~~~LiiGd~~~~~~~ 502 (636)
T PF05817_consen 423 KLKFSLTDKSDGKPKRPHQAFLRLTHQETGLEIIFPAEVDSSGKYKFELDLKDLPKQFLYLSGPYSLSLIIGDASISNPL 502 (636)
T ss_pred EEEEEEEEcCCCCccceeEEEEEEEeCCCCceEEEeeecCCCceEEEEEeccccchhhhhcCCceeEEEEEecCCcCCce
Confidence 99999965 78999999999999999 99999999996 55678999999999999999999999999999999999999
Q ss_pred ceeeeeEEecCCCCCCCCCCCCCCCCCCCCCCCCCCceeeeccCCCCCCChhhHHHHHHHHHHHHHHHHHHHHHhcccCC
Q 012193 319 LRDIGYVELDLPEPPENASRPPPQPVDPYTRYGPKAEITHIFRAPEKRPPQELSLAFLVLTILPLFGFIIGLLRLGVNLK 398 (468)
Q Consensus 319 ~~~l~~v~L~~~~~~~~~~~~p~~~~e~~~ry~pkPEI~HiFR~peK~Pp~ivS~~Ft~lvlapll~Lli~W~~lG~Nl~ 398 (468)
.|++|+++|++++.. ++.+++++.||+|||||||+||+||||||++||++|+++|++||++||++|.++|+|++
T Consensus 503 ~~~l~~i~l~~~~~~------~~~~~~~~~ry~~kpEI~H~Fr~~eK~pp~~vS~~F~~~vlapl~~Ll~~W~~lG~Nl~ 576 (636)
T PF05817_consen 503 NWNLGDISLKFPEDA------PPPKYEKPVRYGPKPEIHHIFREPEKRPPKIVSLVFTGLVLAPLLVLLILWLKLGANLS 576 (636)
T ss_pred eeeeeEEEEecCCcC------CCCCccccccCCCCCceeeecCCCCCCCchHHHHHHHHHHHHHHHHHHHHHHHcCcchh
Confidence 999999999998741 22456678999999999999999999999999999999999999999999999999999
Q ss_pred CCCCCCCcchhHHHHHHHHHHHHHHHHHhhhcccHHHHHHHHHhhhheeeeehhHHHHHHHHHh
Q 012193 399 NFPTSAVPATFAVIFHLGIAAVLLLYVLFWLKLDLFTTLKTLCFLGVFLMVVGHRTLSHLASAS 462 (468)
Q Consensus 399 n~p~s~~p~~~~i~F~~sL~gie~Lf~~Ywl~l~lFqTL~~l~~Lg~~t~l~G~r~Lr~la~~r 462 (468)
|+|+++ ++++||+||+|||++|++||++|||||||+|+++||+|||++|+|+||++++||
T Consensus 577 ~l~~~~----~~~~F~~~l~ai~glf~~Yw~~l~lFqTL~~~~~lg~~t~~~G~r~L~~~a~~r 636 (636)
T PF05817_consen 577 NLPFSP----SAILFHGGLGAIEGLFFLYWLGLNLFQTLPYLAVLGAVTFLSGNRALRELAERR 636 (636)
T ss_pred hCCCCc----hHHHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHhHHHHHHHhhcC
Confidence 999998 699999999999999999999999999999999999999999999999999998
|
The mammalian oligosaccharyltransferase (OST) is a protein complex that effects the cotranslational N-glycosylation of newly synthesised polypeptides, and is composed of at least four rough ER-specific membrane proteins: ribophorins I and II (RI and RII), OST48, and Dadl. The mechanism(s) by which the subunits of this complex are retained in the ER are not well understood [].; GO: 0004579 dolichyl-diphosphooligosaccharide-protein glycotransferase activity, 0018279 protein N-linked glycosylation via asparagine, 0005789 endoplasmic reticulum membrane, 0008250 oligosaccharyltransferase complex |
| >KOG2447 consensus Oligosaccharyltransferase, delta subunit (ribophorin II) [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Homologous Structure Templates
Structure Templates Detected by BLAST 
Original result of BLAST against Protein Data Bank
No homologous structure with e-value below 0.005
Structure Templates Detected by RPS-BLAST 
Original result of RPS-BLAST against PDB70 database
ID ![]() | Alignment Graph ![]() | Length ![]() |
Definition ![]() |
E-value ![]() |
| Query | 468 | |||
| 1vt4_I | 1221 | APAF-1 related killer DARK; drosophila apoptosome, | 5e-08 | |
| 1vt4_I | 1221 | APAF-1 related killer DARK; drosophila apoptosome, | 7e-04 |
| >1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 | Back alignment and structure |
|---|
Score = 54.5 bits (130), Expect = 5e-08
Identities = 45/285 (15%), Positives = 91/285 (31%), Gaps = 68/285 (23%)
Query: 140 ENQELKFDPQDAVY-FLDDLPASFDVGEYIFVFKMLVQDSEQQTVYATGTLTQVPIYVTG 198
E E ++ +D + F D +FD + + K ++ E + + + +
Sbjct: 10 ETGEHQYQYKDILSVFEDAFVDNFDCKDVQDMPKSILSKEEIDHIIMSKDAVSGTLRLFW 69
Query: 199 LIKIENAKIA------VLDSDLG----SVETQKKLDLAGESTVSVSANHLQKLRLSFQMS 248
+ + ++ VL + ++T+++ + + + + +L Q+
Sbjct: 70 TLLSKQEEMVQKFVEEVLRINYKFLMSPIKTEQR-QPSMMTRMYIE--QRDRLYNDNQVF 126
Query: 249 TPLG-NAFKPH----QAFLRLRHETKVEHTFVVG--SSGK-----------KFEITLDFL 290
+ +P+ QA L LR V + G SGK K + +DF
Sbjct: 127 AKYNVSRLQPYLKLRQALLELRPAKNV---LIDGVLGSGKTWVALDVCLSYKVQCKMDF- 182
Query: 291 GLVEKFFYLS-GRYDIQLTVGDAVME--NSLLRDIGYVELDLPEPPENASRPPPQPVDPY 347
K F+L+ + + V+E LL I + N +
Sbjct: 183 ----KIFWLNLKNCNSP----ETVLEMLQKLLYQIDPNWTSRSDHSSN----IKLRIHSI 230
Query: 348 TRYGPKAEITHIFRAPEKRPPQELSLAFLVL------TILPLFGF 386
+AE+ + + K L LVL F
Sbjct: 231 -----QAELRRLLK--SKPYENCL----LVLLNVQNAKAWNAFNL 264
|
| >1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 | Back alignment and structure |
|---|
Structure Templates Detected by HHsearch 
Original result of HHsearch against PDB70 database
No hit with probability above 80.00
Homologous Structure Domains
Structure Domains Detected by RPS-BLAST 
Original result of RPS-BLAST against SCOP70(version1.75) database
No hit with e-value below 0.005
Homologous Domains Detected by HHsearch 
Original result of HHsearch against SCOP70(version1.75) database
No hit with probability above 80.00