Citrus Sinensis ID: 012207
Local Sequence Feature Prediction
| Prediction and (Method) | Result |
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Close Homologs for Annotation Transfer
Close Homologs in SWISS-PROT Database Detected by BLAST 
Original result of BLAST against SWISS-PROT Database
| ID | Alignment graph | Length |
Definition |
RBH(Q2H) |
RBH(H2Q) |
Q cover |
H cover |
Identity |
E-value |
| Query | 468 | 2.2.26 [Sep-21-2011] | |||||||
| Q8RWU5 | 665 | F-box/LRR-repeat protein | yes | no | 0.989 | 0.696 | 0.574 | 1e-124 | |
| Q9C5D2 | 610 | F-box/LRR-repeat protein | no | no | 0.950 | 0.729 | 0.278 | 6e-33 | |
| Q9SKK0 | 628 | EIN3-binding F-box protei | no | no | 0.976 | 0.727 | 0.263 | 5e-23 | |
| P34284 | 466 | Uncharacterized F-box/LRR | yes | no | 0.698 | 0.701 | 0.252 | 8e-21 | |
| Q8BH16 | 423 | F-box/LRR-repeat protein | yes | no | 0.643 | 0.711 | 0.266 | 3e-20 | |
| Q5R3Z8 | 423 | F-box/LRR-repeat protein | yes | no | 0.643 | 0.711 | 0.257 | 5e-19 | |
| Q9UKC9 | 423 | F-box/LRR-repeat protein | yes | no | 0.643 | 0.711 | 0.257 | 6e-19 | |
| Q96IG2 | 436 | F-box/LRR-repeat protein | no | no | 0.643 | 0.690 | 0.262 | 1e-18 | |
| Q58DG6 | 436 | F-box/LRR-repeat protein | yes | no | 0.643 | 0.690 | 0.262 | 1e-18 | |
| Q9CZV8 | 436 | F-box/LRR-repeat protein | no | no | 0.643 | 0.690 | 0.262 | 2e-18 |
| >sp|Q8RWU5|FBL3_ARATH F-box/LRR-repeat protein 3 OS=Arabidopsis thaliana GN=FBL3 PE=2 SV=1 | Back alignment and function desciption |
|---|
Score = 446 bits (1146), Expect = e-124, Method: Compositional matrix adjust.
Identities = 267/465 (57%), Positives = 338/465 (72%), Gaps = 2/465 (0%)
Query: 2 EAKRKKNSNPFDFLSEEIIFNILDHLNNDPFARKSFSLTCRNFYSIESRHRKILKPLCAE 61
+ K+ + PFD LSEE++F ILD ++ +P KSFSLTC++FY +ES+HR LKPL ++
Sbjct: 3 KVKQIRVLKPFDLLSEELVFIILDLISPNPSDLKSFSLTCKSFYQLESKHRGSLKPLRSD 62
Query: 62 TLSRTSARYPFITQLDLSLCPRANDDALSIVSSSSWKLTLRSINLSRSRLFTKVGLSSLT 121
L R RY T LDL+ CPR D ALS+V S TLRS++LSRS F+ GL L
Sbjct: 63 YLPRILTRYRNTTDLDLTFCPRVTDYALSVVGCLSGP-TLRSLDLSRSGSFSAAGLLRLA 121
Query: 122 VNCRFLTEIDLSNGTEMGDAAAAAIAEAKNLERLWLARCKLITDLGIGRIAACCRKLKLL 181
+ C L EIDLSN TEM DA AA +AEA++LERL L RCK++TD+GIG IA C+KL +
Sbjct: 122 LKCVNLVEIDLSNATEMRDADAAVVAEARSLERLKLGRCKMLTDMGIGCIAVGCKKLNTV 181
Query: 182 CLKWCIRVTDLGVELVALKCQEIRTLDLSYLPITEKCLPPVVKLQYLEDLVLEGCHGIDD 241
LKWC+ V DLGV L+A+KC++IRTLDLSYLPIT KCL ++KLQ+LE+L+LEGC G+DD
Sbjct: 182 SLKWCVGVGDLGVGLLAVKCKDIRTLDLSYLPITGKCLHDILKLQHLEELLLEGCFGVDD 241
Query: 242 DGLASVEYSCKSLKALNLSKCQNISHVGLSSLIKGADYLQQLILAY-SFWVSADLSKCLH 300
D L S+ + CKSLK L+ S CQN++H GL+SL+ GA YLQ+L L++ S +S D + L
Sbjct: 242 DSLKSLRHDCKSLKKLDASSCQNLTHRGLTSLLSGAGYLQRLDLSHCSSVISLDFASSLK 301
Query: 301 NFPMLQSIKFEDCPVARSGIKAIGNWHGSLKELSLSKCSGVTDEELSFVVQSHKELRKLD 360
LQSI+ + C V G+KAIG SLKE+SLSKC VTDE LS +V K+LRKLD
Sbjct: 302 KVSALQSIRLDGCSVTPDGLKAIGTLCNSLKEVSLSKCVSVTDEGLSSLVMKLKDLRKLD 361
Query: 361 ITCCRKITYASINSITKTCTSLTSLRMECCKLVSWEAFVLIGQQCQYLEELDITENEVND 420
ITCCRK++ SI I +C L SL+ME C LVS EAF LIGQ+C+ LEELD+T+NE++D
Sbjct: 362 ITCCRKLSRVSITQIANSCPLLVSLKMESCSLVSREAFWLIGQKCRLLEELDLTDNEIDD 421
Query: 421 EGLKSISRCSKLSSLKLGICSNITDEGLKHVGSTCSMLKELDLYR 465
EGLKSIS C LSSLKLGIC NITD+GL ++G CS L+ELDLYR
Sbjct: 422 EGLKSISSCLSLSSLKLGICLNITDKGLSYIGMGCSNLRELDLYR 466
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Arabidopsis thaliana (taxid: 3702) |
| >sp|Q9C5D2|FBL4_ARATH F-box/LRR-repeat protein 4 OS=Arabidopsis thaliana GN=FBL4 PE=2 SV=1 | Back alignment and function description |
|---|
Score = 142 bits (358), Expect = 6e-33, Method: Compositional matrix adjust.
Identities = 147/528 (27%), Positives = 237/528 (44%), Gaps = 83/528 (15%)
Query: 15 LSEEIIFNILDHLNNDPFARKSFSLTCRNFYSIESRHRKILKPLCA----ETLSRTSARY 70
L EE+I I L + P R + SL C+ + S+E R L+ + + +S S R+
Sbjct: 11 LPEELILEIFRRLESKP-NRDACSLVCKRWLSLERFSRTTLRIGASFSPDDFISLLSRRF 69
Query: 71 PFITQLDLS--------------------------------LCPRANDDALSIVSSSSWK 98
+IT + + L + + A ++ SSS
Sbjct: 70 LYITSIHVDERISVSLPSLSPSPKRKRGRDSSSPSSSKRKKLTDKTHSGAENVESSSLTD 129
Query: 99 LTLRSINLSRSRL----------FTKVGLSSLTVNCRFLTEIDLSNGTEMGDAAAAAIAE 148
L ++ R+ + VGL SL C L +DL G +GD AA+ +
Sbjct: 130 TGLTALANGFPRIENLSLIWCPNVSSVGLCSLAQKCTSLKSLDL-QGCYVGDQGLAAVGK 188
Query: 149 -AKNLERLWLARCKLITDLG-IGRIAACCRKLKLLCLKWCIRVTDLGVELVALKCQEIRT 206
K LE L L C+ +TD+G I + C + LK + + ++TDL +E V C+ +
Sbjct: 189 FCKQLEELNLRFCEGLTDVGVIDLVVGCSKSLKSIGVAASAKITDLSLEAVGSHCKLLEV 248
Query: 207 LDLSYLPITEKCLPPVVK-LQYLEDLVLEGCHGIDDDGLASVEYSCKSLKALNLSKCQNI 265
L L I +K L V + L++L L+ C + D A+V C SL+ L L Q+
Sbjct: 249 LYLDSEYIHDKGLIAVAQGCHRLKNLKLQ-CVSVTDVAFAAVGELCTSLERLALYSFQHF 307
Query: 266 SHVGLSSLIKGADYLQQLILAYSFWVS-ADLSKCLHNFPMLQSIKFEDCP-VARSGIKAI 323
+ G+ ++ KG+ L+ L L+ ++VS L H L+ ++ C + GI+AI
Sbjct: 308 TDKGMRAIGKGSKKLKDLTLSDCYFVSCKGLEAIAHGCKELERVEINGCHNIGTRGIEAI 367
Query: 324 GNWHGSLKELSL--------------------------SKCSGVTDEELSFVVQSHKELR 357
G LKEL+L CSG+ D + + + + L+
Sbjct: 368 GKSCPRLKELALLYCQRIGNSALQEIGKGCKSLEILHLVDCSGIGDIAMCSIAKGCRNLK 427
Query: 358 KLDITCCRKITYASINSITKTCTSLTSLRMECCKLVSWEAFVLIGQQCQYLEELDITE-N 416
KL I C +I I SI K C SLT L + C V +A + IG+ C L++L+++ N
Sbjct: 428 KLHIRRCYEIGNKGIISIGKHCKSLTELSLRFCDKVGNKALIAIGKGCS-LQQLNVSGCN 486
Query: 417 EVNDEGLKSISR-CSKLSSLKLGICSNITDEGLKHVGSTCSMLKELDL 463
+++D G+ +I+R C +L+ L + + NI D L +G C MLK+L L
Sbjct: 487 QISDAGITAIARGCPQLTHLDISVLQNIGDMPLAELGEGCPMLKDLVL 534
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Arabidopsis thaliana (taxid: 3702) |
| >sp|Q9SKK0|EBF1_ARATH EIN3-binding F-box protein 1 OS=Arabidopsis thaliana GN=EBF1 PE=1 SV=1 | Back alignment and function description |
|---|
Score = 109 bits (272), Expect = 5e-23, Method: Compositional matrix adjust.
Identities = 145/551 (26%), Positives = 231/551 (41%), Gaps = 94/551 (17%)
Query: 6 KKNSNPFDFLSEEIIFNILDHLNNDPFARKSFSLTCRNFYSIES--RHRKILKPL----- 58
+K D L +E +F I L+ P R + + + + ++ S R ++I P
Sbjct: 58 EKKPVSIDVLPDECLFEIFRRLSG-PQERSACAFVSKQWLTLVSSIRQKEIDVPSKITED 116
Query: 59 ---CAETLSRT----SARYPFITQLDLSLCPRANDDALSIVSSSSWK---LTLRSINLSR 108
C LSR+ A + + + R LSI S+S K L LRSI S
Sbjct: 117 GDDCEGCLSRSLDGKKATDVRLAAIAVGTAGRGGLGKLSIRGSNSAKVSDLGLRSIGRSC 176
Query: 109 SRL----------FTKVGLSSLTVNCRFLTEIDLSNGTEMGDAAAAAIAEA-KNLERLWL 157
L T GL + C L +++L+ + + D AIA++ NL L L
Sbjct: 177 PSLGSLSLWNVSTITDNGLLEIAEGCAQLEKLELNRCSTITDKGLVAIAKSCPNLTELTL 236
Query: 158 ARCKLITDLGIGRIAACCRKLKLLCLKWCIRVTDLGV---------ELVALKCQEIRTLD 208
C I D G+ IA C KLK + +K C V D G+ L LK Q + D
Sbjct: 237 EACSRIGDEGLLAIARSCSKLKSVSIKNCPLVRDQGIASLLSNTTCSLAKLKLQMLNVTD 296
Query: 209 LSY-------LPITEKCLPPV--------------VKLQYLEDLVLEGCHGIDDDGLASV 247
+S L IT+ L + V LQ L L + C G+ D GL SV
Sbjct: 297 VSLAVVGHYGLSITDLVLAGLSHVSEKGFWVMGNGVGLQKLNSLTITACQGVTDMGLESV 356
Query: 248 EYSCKSLKALNLSKCQNISHVGLSSLIKGADYLQQL-------ILAYSFWVSA------- 293
C ++K +SK +S GL S K + L+ L + + F+ S
Sbjct: 357 GKGCPNMKKAIISKSPLLSDNGLVSFAKASLSLESLQLEECHRVTQFGFFGSLLNCGEKL 416
Query: 294 ---DLSKCLH------NFPM------LQSIKFEDCP-VARSGIKAIGNWHGSLKELSLSK 337
L CL P L+S+ +CP + + AIG L+++ L
Sbjct: 417 KAFSLVNCLSIRDLTTGLPASSHCSALRSLSIRNCPGFGDANLAAIGKLCPQLEDIDLCG 476
Query: 338 CSGVTDEELSFVVQSHKELRKLDITCCRKITYASINSIT-KTCTSLTSLRMECCKLVSWE 396
G+T+ ++QS L K++ + C +T I++IT + +L L ++ C ++
Sbjct: 477 LKGITESGFLHLIQS--SLVKINFSGCSNLTDRVISAITARNGWTLEVLNIDGCSNITDA 534
Query: 397 AFVLIGQQCQYLEELDITENEVNDEGLKSISRCS--KLSSLKLGICSNITDEGLKHVGST 454
+ V I CQ L +LDI++ ++D G+++++ KL L + CS +TD+ L +
Sbjct: 535 SLVSIAANCQILSDLDISKCAISDSGIQALASSDKLKLQILSVAGCSMVTDKSLPAIVGL 594
Query: 455 CSMLKELDLYR 465
S L L+L +
Sbjct: 595 GSTLLGLNLQQ 605
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Component of SCF(EBF1) E3 ubiquitin ligase complexes, which may mediate the ubiquitination and subsequent proteasomal degradation of target proteins (probably including EIN3 and EIL1). Regulator of the ethylene signaling cascade by modulating the stability of EIN3 and EIL1 proteins. Confers insensitivity to ethylene. Arabidopsis thaliana (taxid: 3702) |
| >sp|P34284|YKK7_CAEEL Uncharacterized F-box/LRR-repeat protein C02F5.7 OS=Caenorhabditis elegans GN=C02F5.7 PE=4 SV=3 | Back alignment and function description |
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Score = 102 bits (253), Expect = 8e-21, Method: Compositional matrix adjust.
Identities = 93/368 (25%), Positives = 167/368 (45%), Gaps = 41/368 (11%)
Query: 96 SWK-LTLRSINLSRSRLFT------KVGLSSLTVNCR-FLTEIDLSNGTEMGDAAAAAI- 146
SW L L N R LFT + +L C FL E+ L + D+A
Sbjct: 86 SWSILALDGSNWQRVDLFTFQRDVKTAVVENLARRCGGFLKELSLKGCENVHDSALRTFT 145
Query: 147 AEAKNLERLWLARCKLITDLGIGRIAACCRKLKLLCLKWCIRVTDLGVELVALKCQEIRT 206
+ NLE L L RCK +TD + C KL L L+ C +TD ++ + C +
Sbjct: 146 SRCPNLEHLSLYRCKRVTDASCENLGRYCHKLNYLNLENCSSITDRAMKYIGDGCPNLSY 205
Query: 207 LDLSYL-PITEKCLPPVV-KLQYLEDLVLEGCHGIDDDGLASVEYSCKSLKALNLSKCQN 264
L++S+ I ++ + ++ + L+ L+L GC G+ ++ SVE ++K LNL +C
Sbjct: 206 LNISWCDAIQDRGVQIILSNCKSLDTLILRGCEGLTENVFGSVEAHMGAIKKLNLLQCFQ 265
Query: 265 ISHVGLSSLIKGADYLQQLILAYSFWVSADLSKCLHNFPMLQSIKFEDCPVARSGIKAIG 324
++ + + ++ GA L+ L C+ N ++ + ++G
Sbjct: 266 LTDITVQNIANGATALEYL--------------CMSNCNQ----------ISDRSLVSLG 301
Query: 325 NWHGSLKELSLSKCSGVTDEELSFVVQSHKELRKLDITCCRKITYASINSITKTCTSLTS 384
+LK L LS C+ + D + + ++L +LD+ C I+ +INS+ CT+L
Sbjct: 302 QHSHNLKVLELSGCTLLGDNGFIPLARGCRQLERLDMEDCSLISDHTINSLANNCTALRE 361
Query: 385 LRMECCKLVSWEAFVLIGQQCQYLEELDITE----NEVNDEGLKSISRCSKLSSLKLGIC 440
L + C+L++ E+ + ++ E L++ E ++ D L + C L + L C
Sbjct: 362 LSLSHCELITDESIQNLAS--KHRETLNVLELDNCPQLTDSTLSHLRHCKALKRIDLYDC 419
Query: 441 SNITDEGL 448
N++ E +
Sbjct: 420 QNVSKEAI 427
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Caenorhabditis elegans (taxid: 6239) |
| >sp|Q8BH16|FBXL2_MOUSE F-box/LRR-repeat protein 2 OS=Mus musculus GN=Fbxl2 PE=1 SV=1 | Back alignment and function description |
|---|
Score = 100 bits (248), Expect = 3e-20, Method: Compositional matrix adjust.
Identities = 89/334 (26%), Positives = 158/334 (47%), Gaps = 33/334 (9%)
Query: 126 FLTEIDLSNGTEMGDAAAAAIAE-AKNLERLWLARCKLITDLGIGRIAACCRKLKLLCLK 184
FL ++ L +GD++ A+ +N+E L L C ITD ++ C KLK L L
Sbjct: 79 FLRKLSLRGCIGVGDSSLKTFAQNCRNIEHLNLNGCTKITDSTCYSLSRFCSKLKHLDLT 138
Query: 185 WCIRVTDLGVELVALKCQEIRTLDLSYL-PITEKCLPPVVK-LQYLEDLVLEGCHGIDDD 242
C+ VT+ ++ ++ C+ + L+LS+ IT++ + +V+ + L+ L+L GC ++D+
Sbjct: 139 SCVSVTNSSLKGISEGCRNLEYLNLSWCDQITKEGIEALVRGCRGLKALLLRGCTQLEDE 198
Query: 243 GLASVEYSCKSLKALNLSKCQNISHVGLSSLIKGADYLQQLILAY-SFWVSADLSKCLHN 301
L ++ C L +LNL C I+ G+ + +G LQ L L+ S A L+ N
Sbjct: 199 ALKHIQNHCHELVSLNLQSCSRITDDGVVQICRGCHRLQALCLSGCSNLTDASLTALGLN 258
Query: 302 FPMLQSIKFEDCPVARSGIKAIGNWHGSLKELSLSKCSGVTDEELSFVVQSHKELRKLDI 361
P LQ L ++CS +TD + + ++ EL K+D+
Sbjct: 259 CPRLQV-------------------------LEAARCSHLTDAGFTLLARNCHELEKMDL 293
Query: 362 TCCRKITYASINSITKTCTSLTSLRMECCKLVSWEAFVLIGQQCQYLEELDITENE---- 417
C IT +++ ++ C L +L + C+L++ E + + E L + E +
Sbjct: 294 EECVLITDSTLVQLSIHCPKLQALSLSHCELITDEGILHLSSSTCGHERLRVLELDNCLL 353
Query: 418 VNDEGLKSISRCSKLSSLKLGICSNITDEGLKHV 451
V D L+ + C L L+L C +T G+K +
Sbjct: 354 VTDASLEHLENCRGLERLELYDCQQVTRAGIKRM 387
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Probably recognizes and binds to some phosphorylated proteins and promotes their ubiquitination and degradation. Mus musculus (taxid: 10090) |
| >sp|Q5R3Z8|FBXL2_PONAB F-box/LRR-repeat protein 2 OS=Pongo abelii GN=FBXL2 PE=2 SV=1 | Back alignment and function description |
|---|
Score = 96.3 bits (238), Expect = 5e-19, Method: Compositional matrix adjust.
Identities = 86/334 (25%), Positives = 157/334 (47%), Gaps = 33/334 (9%)
Query: 126 FLTEIDLSNGTEMGDAAAAAIAE-AKNLERLWLARCKLITDLGIGRIAACCRKLKLLCLK 184
FL ++ L +GD++ A+ +N+E L L C ITD ++ C KLK L L
Sbjct: 79 FLRKLSLRGCIGVGDSSLKTFAQNCRNIEHLNLNGCTKITDSTCYSLSRFCSKLKHLDLT 138
Query: 185 WCIRVTDLGVELVALKCQEIRTLDLSYL-PITEKCLPPVVK-LQYLEDLVLEGCHGIDDD 242
C+ +T+ ++ ++ C+ + L+LS+ IT+ + +V+ + L+ L+L GC ++D+
Sbjct: 139 SCVSITNSSLKGISEGCRNLEYLNLSWCDQITKDGIEALVRGCRGLKALLLRGCTQLEDE 198
Query: 243 GLASVEYSCKSLKALNLSKCQNISHVGLSSLIKGADYLQQLILAY-SFWVSADLSKCLHN 301
L ++ C L +LNL C I+ G+ + +G LQ L L+ S A L+ N
Sbjct: 199 ALKHIQNYCHELVSLNLQSCSRITDEGVVQICRGCHRLQALCLSGCSNLTDASLTALGLN 258
Query: 302 FPMLQSIKFEDCPVARSGIKAIGNWHGSLKELSLSKCSGVTDEELSFVVQSHKELRKLDI 361
P LQ L ++CS +TD + + ++ EL K+D+
Sbjct: 259 CPRLQI-------------------------LEAARCSHLTDAGFTLLARNCHELEKMDL 293
Query: 362 TCCRKITYASINSITKTCTSLTSLRMECCKLVSWEAFVLIGQQCQYLEELDITENE---- 417
C IT +++ ++ C L +L + C+L++ + + + E L + E +
Sbjct: 294 EECILITDSTLIQLSIHCPKLQALSLSHCELITDDGILHLSNSTCGHERLRVLELDNCLL 353
Query: 418 VNDEGLKSISRCSKLSSLKLGICSNITDEGLKHV 451
+ D L+ + C L L+L C +T G+K +
Sbjct: 354 ITDVALEHLENCRGLERLELYDCQQVTRAGIKRM 387
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Probably recognizes and binds to some phosphorylated proteins and promotes their ubiquitination and degradation. Pongo abelii (taxid: 9601) |
| >sp|Q9UKC9|FBXL2_HUMAN F-box/LRR-repeat protein 2 OS=Homo sapiens GN=FBXL2 PE=1 SV=3 | Back alignment and function description |
|---|
Score = 95.9 bits (237), Expect = 6e-19, Method: Compositional matrix adjust.
Identities = 86/334 (25%), Positives = 157/334 (47%), Gaps = 33/334 (9%)
Query: 126 FLTEIDLSNGTEMGDAAAAAIAE-AKNLERLWLARCKLITDLGIGRIAACCRKLKLLCLK 184
FL ++ L +GD++ A+ +N+E L L C ITD ++ C KLK L L
Sbjct: 79 FLRKLSLRGCIGVGDSSLKTFAQNCRNIEHLNLNGCTKITDSTCYSLSRFCSKLKHLDLT 138
Query: 185 WCIRVTDLGVELVALKCQEIRTLDLSYL-PITEKCLPPVVK-LQYLEDLVLEGCHGIDDD 242
C+ +T+ ++ ++ C+ + L+LS+ IT+ + +V+ + L+ L+L GC ++D+
Sbjct: 139 SCVSITNSSLKGISEGCRNLEYLNLSWCDQITKDGIEALVRGCRGLKALLLRGCTQLEDE 198
Query: 243 GLASVEYSCKSLKALNLSKCQNISHVGLSSLIKGADYLQQLILAY-SFWVSADLSKCLHN 301
L ++ C L +LNL C I+ G+ + +G LQ L L+ S A L+ N
Sbjct: 199 ALKHIQNYCHELVSLNLQSCSRITDEGVVQICRGCHRLQALCLSGCSNLTDASLTALGLN 258
Query: 302 FPMLQSIKFEDCPVARSGIKAIGNWHGSLKELSLSKCSGVTDEELSFVVQSHKELRKLDI 361
P LQ L ++CS +TD + + ++ EL K+D+
Sbjct: 259 CPRLQI-------------------------LEAARCSHLTDAGFTLLARNCHELEKMDL 293
Query: 362 TCCRKITYASINSITKTCTSLTSLRMECCKLVSWEAFVLIGQQCQYLEELDITENE---- 417
C IT +++ ++ C L +L + C+L++ + + + E L + E +
Sbjct: 294 EECILITDSTLIQLSIHCPKLQALSLSHCELITDDGILHLSNSTCGHERLRVLELDNCLL 353
Query: 418 VNDEGLKSISRCSKLSSLKLGICSNITDEGLKHV 451
+ D L+ + C L L+L C +T G+K +
Sbjct: 354 ITDVALEHLENCRGLERLELYDCQQVTRAGIKRM 387
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Probably recognizes and binds to some phosphorylated proteins and promotes their ubiquitination and degradation. Binds to hepatitis C virus non-structural protein 5A (NS5A) in a reaction crucial for hepatitis C virus RNA replication. Homo sapiens (taxid: 9606) |
| >sp|Q96IG2|FXL20_HUMAN F-box/LRR-repeat protein 20 OS=Homo sapiens GN=FBXL20 PE=1 SV=2 | Back alignment and function description |
|---|
Score = 94.7 bits (234), Expect = 1e-18, Method: Compositional matrix adjust.
Identities = 82/312 (26%), Positives = 154/312 (49%), Gaps = 11/312 (3%)
Query: 72 FITQLDLSLCPRANDDALSIVSSSSWKLTLRSINLSRSRLFTKVGLSSLTVNCRFLTEID 131
F+ +L L C D+AL + + + + +NL+ T +SL+ C L +D
Sbjct: 92 FLRKLSLRGCLGVGDNALRTFAQNCRNIEV--LNLNGCTKTTDATCTSLSKFCSKLRHLD 149
Query: 132 LSNGTEMGDAAAAAIAEA-KNLERLWLARCKLITDLGIGRIAACCRKLKLLCLKWCIRVT 190
L++ T + + + A++E LE+L ++ C +T GI + C LK L LK C ++
Sbjct: 150 LASCTSITNMSLKALSEGCPLLEQLNISWCDQVTKDGIQALVRGCGGLKALFLKGCTQLE 209
Query: 191 DLGVELVALKCQEIRTLDL-SYLPITEKCLPPVVK-LQYLEDLVLEGCHGIDDDGLASVE 248
D ++ + C E+ TL+L + L IT++ L + + L+ L GC I D L ++
Sbjct: 210 DEALKYIGAHCPELVTLNLQTCLQITDEGLITICRGCHKLQSLCASGCSNITDAILNALG 269
Query: 249 YSCKSLKALNLSKCQNISHVGLSSLIKGADYLQQLILAYSFWVS-ADLSKCLHNFPMLQS 307
+C L+ L +++C ++ VG ++L + L+++ L ++ + L + + P LQ
Sbjct: 270 QNCPRLRILEVARCSQLTDVGFTTLARNCHELEKMDLEECVQITDSTLIQLSIHCPRLQV 329
Query: 308 IKFEDCP-VARSGIKAIGNW---HGSLKELSLSKCSGVTDEELSFVVQSHKELRKLDITC 363
+ C + GI+ +GN H L+ + L C +TD L + H L ++++
Sbjct: 330 LSLSHCELITDDGIRHLGNGACAHDQLEVIELDNCPLITDASLEHLKSCHS-LERIELYD 388
Query: 364 CRKITYASINSI 375
C++IT A I +
Sbjct: 389 CQQITRAGIKRL 400
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Substrate-recognition component of the SCF (SKP1-CUL1-F-box protein)-type E3 ubiquitin ligase complex. Role in neural transmission. Homo sapiens (taxid: 9606) |
| >sp|Q58DG6|FXL20_BOVIN F-box/LRR-repeat protein 20 OS=Bos taurus GN=FBXL20 PE=2 SV=2 | Back alignment and function description |
|---|
Score = 94.7 bits (234), Expect = 1e-18, Method: Compositional matrix adjust.
Identities = 82/312 (26%), Positives = 154/312 (49%), Gaps = 11/312 (3%)
Query: 72 FITQLDLSLCPRANDDALSIVSSSSWKLTLRSINLSRSRLFTKVGLSSLTVNCRFLTEID 131
F+ +L L C D+AL + + + + +NL+ T +SL+ C L +D
Sbjct: 92 FLRKLSLRGCLGVGDNALRTFAQNCRNIEV--LNLNGCTKTTDATCTSLSKFCSKLRHLD 149
Query: 132 LSNGTEMGDAAAAAIAEA-KNLERLWLARCKLITDLGIGRIAACCRKLKLLCLKWCIRVT 190
L++ T + + + A++E LE+L ++ C +T GI + C LK L LK C ++
Sbjct: 150 LASCTSITNMSLKALSEGCPLLEQLNISWCDQVTKDGIQALVRGCGGLKALFLKGCTQLE 209
Query: 191 DLGVELVALKCQEIRTLDL-SYLPITEKCLPPVVK-LQYLEDLVLEGCHGIDDDGLASVE 248
D ++ + C E+ TL+L + L IT++ L + + L+ L GC I D L ++
Sbjct: 210 DEALKYIGAHCPELVTLNLQTCLQITDEGLITICRGCHKLQSLCASGCSNITDAILNALG 269
Query: 249 YSCKSLKALNLSKCQNISHVGLSSLIKGADYLQQLILAYSFWVS-ADLSKCLHNFPMLQS 307
+C L+ L +++C ++ VG ++L + L+++ L ++ + L + + P LQ
Sbjct: 270 QNCPRLRILEVARCSQLTDVGFTTLARNCHELEKMDLEECVQITDSTLIQLSIHCPRLQV 329
Query: 308 IKFEDCP-VARSGIKAIGNW---HGSLKELSLSKCSGVTDEELSFVVQSHKELRKLDITC 363
+ C + GI+ +GN H L+ + L C +TD L + H L ++++
Sbjct: 330 LSLSHCELITDDGIRHLGNGACAHDQLEVIELDNCPLITDASLEHLKSCHS-LERIELYD 388
Query: 364 CRKITYASINSI 375
C++IT A I +
Sbjct: 389 CQQITRAGIKRL 400
|
Substrate-recognition component of the SCF (SKP1-CUL1-F-box protein)-type E3 ubiquitin ligase complex. Role in neural transmission. Bos taurus (taxid: 9913) |
| >sp|Q9CZV8|FXL20_MOUSE F-box/LRR-repeat protein 20 OS=Mus musculus GN=Fbxl20 PE=1 SV=3 | Back alignment and function description |
|---|
Score = 94.0 bits (232), Expect = 2e-18, Method: Compositional matrix adjust.
Identities = 82/312 (26%), Positives = 153/312 (49%), Gaps = 11/312 (3%)
Query: 72 FITQLDLSLCPRANDDALSIVSSSSWKLTLRSINLSRSRLFTKVGLSSLTVNCRFLTEID 131
F+ +L L C D+AL + + + + S+N T +SL+ C L +D
Sbjct: 92 FLRKLSLRGCLGVGDNALRTFAQNCRNIEVLSLNGCTKT--TDATCTSLSKFCSKLRHLD 149
Query: 132 LSNGTEMGDAAAAAIAEA-KNLERLWLARCKLITDLGIGRIAACCRKLKLLCLKWCIRVT 190
L++ T + + + A++E LE+L ++ C +T GI + C LK L LK C ++
Sbjct: 150 LASCTSITNMSLKALSEGCPLLEQLNISWCDQVTKDGIQALVRGCGGLKALFLKGCTQLE 209
Query: 191 DLGVELVALKCQEIRTLDL-SYLPITEKCLPPVVK-LQYLEDLVLEGCHGIDDDGLASVE 248
D ++ + C E+ TL+L + L IT++ L + + L+ L GC I D L ++
Sbjct: 210 DEALKYIGAHCPELVTLNLQTCLQITDEGLITICRGCHKLQSLCASGCSNITDAILNALG 269
Query: 249 YSCKSLKALNLSKCQNISHVGLSSLIKGADYLQQLILAYSFWVS-ADLSKCLHNFPMLQS 307
+C L+ L +++C ++ VG ++L + L+++ L ++ + L + + P LQ
Sbjct: 270 QNCPRLRILEVARCSQLTDVGFTTLARNCHELEKMDLEECVQITDSTLIQLSIHCPRLQV 329
Query: 308 IKFEDCP-VARSGIKAIGNW---HGSLKELSLSKCSGVTDEELSFVVQSHKELRKLDITC 363
+ C + GI+ +GN H L+ + L C +TD L + H L ++++
Sbjct: 330 LSLSHCELITDDGIRHLGNGACAHDQLEVIELDNCPLITDASLEHLKSCHS-LERIELYD 388
Query: 364 CRKITYASINSI 375
C++IT A I +
Sbjct: 389 CQQITRAGIKRL 400
|
Substrate-recognition component of the SCF (SKP1-CUL1-F-box protein)-type E3 ubiquitin ligase complex. Isoform 3 regulates neural transmission by binding and ubiquitinating RIMS1, a modulator of presynaptic plasticity. Mus musculus (taxid: 10090) |
Close Homologs in the Non-Redundant Database Detected by BLAST
Original result of BLAST against Nonredundant Database
| GI | Alignment Graph | Length |
Definition |
Q cover |
H cover |
Identity |
E-value |
| Query | 468 | ||||||
| 224146675 | 649 | predicted protein [Populus trichocarpa] | 0.976 | 0.704 | 0.700 | 1e-177 | |
| 224140535 | 668 | predicted protein [Populus trichocarpa] | 0.976 | 0.684 | 0.659 | 1e-164 | |
| 225434419 | 668 | PREDICTED: F-box/LRR-repeat protein 3-li | 0.989 | 0.693 | 0.637 | 1e-164 | |
| 297745808 | 702 | unnamed protein product [Vitis vinifera] | 0.989 | 0.659 | 0.637 | 1e-164 | |
| 449463292 | 663 | PREDICTED: F-box/LRR-repeat protein 3-li | 0.974 | 0.687 | 0.624 | 1e-163 | |
| 449530965 | 661 | PREDICTED: LOW QUALITY PROTEIN: F-box/LR | 0.991 | 0.701 | 0.612 | 1e-163 | |
| 255571507 | 669 | F-box protein, atfbl3, putative [Ricinus | 0.991 | 0.693 | 0.645 | 1e-162 | |
| 224091068 | 666 | predicted protein [Populus trichocarpa] | 0.974 | 0.684 | 0.649 | 1e-159 | |
| 225439576 | 663 | PREDICTED: F-box/LRR-repeat protein 3 [V | 0.985 | 0.695 | 0.630 | 1e-153 | |
| 356551924 | 652 | PREDICTED: F-box/LRR-repeat protein 3-li | 0.980 | 0.703 | 0.600 | 1e-152 |
| >gi|224146675|ref|XP_002326094.1| predicted protein [Populus trichocarpa] gi|222862969|gb|EEF00476.1| predicted protein [Populus trichocarpa] | Back alignment and taxonomy information |
|---|
Score = 626 bits (1615), Expect = e-177, Method: Compositional matrix adjust.
Identities = 321/458 (70%), Positives = 377/458 (82%), Gaps = 1/458 (0%)
Query: 8 NSNPFDFLSEEIIFNILDHLNNDPFARKSFSLTCRNFYSIESRHRKILKPLCAETLSRTS 67
N NPFDFL+EEIIF ILD+LN+DPFA+KSFSLTC+ FYSIES HRK LKPL AE L RT
Sbjct: 10 NCNPFDFLTEEIIFTILDYLNDDPFAKKSFSLTCKAFYSIESHHRKTLKPLRAELLLRTL 69
Query: 68 ARYPFITQLDLSLCPRANDDALSIVSSSSWKLTLRSINLSRSRLFTKVGLSSLTVNCRFL 127
RYP I LDL++CPR D L++VS + K L SINLSRSR FT +GLSSL +C L
Sbjct: 70 HRYPHIEHLDLTVCPRIEDRMLNVVSLAC-KDALCSINLSRSRFFTNIGLSSLVSSCFNL 128
Query: 128 TEIDLSNGTEMGDAAAAAIAEAKNLERLWLARCKLITDLGIGRIAACCRKLKLLCLKWCI 187
EIDLSNG E+ D AAAAIAEAKNLE+LWLARCKLITDLGIG +A CRKL+L+CLKWC+
Sbjct: 129 VEIDLSNGVELNDLAAAAIAEAKNLEKLWLARCKLITDLGIGCVAVGCRKLRLICLKWCL 188
Query: 188 RVTDLGVELVALKCQEIRTLDLSYLPITEKCLPPVVKLQYLEDLVLEGCHGIDDDGLASV 247
+++DLGV+L+ALKC+EIR+LDLSYL ITEKCLP +++LQ+LEDLVLEGC GI+DDGL+++
Sbjct: 189 KISDLGVQLLALKCKEIRSLDLSYLQITEKCLPSILQLQHLEDLVLEGCLGINDDGLSTL 248
Query: 248 EYSCKSLKALNLSKCQNISHVGLSSLIKGADYLQQLILAYSFWVSADLSKCLHNFPMLQS 307
+ SCKSLK N+S C N SHVGL SLI GA+ L++L LAY V+ADL+KCLHNF L S
Sbjct: 249 QQSCKSLKTFNMSNCHNHSHVGLLSLINGAENLRELTLAYGPSVTADLAKCLHNFSGLHS 308
Query: 308 IKFEDCPVARSGIKAIGNWHGSLKELSLSKCSGVTDEELSFVVQSHKELRKLDITCCRKI 367
+KF+ C V SGI+AIGNW SLKELS SKCSGV D+ LSF+VQ HKELRKLDITCCR I
Sbjct: 309 VKFDGCLVKCSGIRAIGNWPNSLKELSFSKCSGVADDSLSFLVQGHKELRKLDITCCRMI 368
Query: 368 TYASINSITKTCTSLTSLRMECCKLVSWEAFVLIGQQCQYLEELDITENEVNDEGLKSIS 427
Y S++SIT +C SLTSLRME C LV EAFVL GQ+CQ +EELD+T+ +++DEGLKSIS
Sbjct: 369 MYDSVDSITSSCCSLTSLRMESCSLVPKEAFVLFGQRCQLMEELDVTDTKIDDEGLKSIS 428
Query: 428 RCSKLSSLKLGICSNITDEGLKHVGSTCSMLKELDLYR 465
RCSKLSSLKLGIC NITD GLKH+GS CS LKELDLYR
Sbjct: 429 RCSKLSSLKLGICMNITDNGLKHIGSRCSKLKELDLYR 466
|
Source: Populus trichocarpa Species: Populus trichocarpa Genus: Populus Family: Salicaceae Order: Malpighiales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|224140535|ref|XP_002323638.1| predicted protein [Populus trichocarpa] gi|222868268|gb|EEF05399.1| predicted protein [Populus trichocarpa] | Back alignment and taxonomy information |
|---|
Score = 585 bits (1509), Expect = e-164, Method: Compositional matrix adjust.
Identities = 302/458 (65%), Positives = 364/458 (79%), Gaps = 1/458 (0%)
Query: 8 NSNPFDFLSEEIIFNILDHLNNDPFARKSFSLTCRNFYSIESRHRKILKPLCAETLSRTS 67
NSN FD LSEEI+F ILD ++ +P RKSFSL C++FY ES+HRK LKPL E L R
Sbjct: 13 NSNLFDLLSEEIVFTILDFIDTNPLDRKSFSLVCKSFYITESKHRKNLKPLRQELLPRVL 72
Query: 68 ARYPFITQLDLSLCPRANDDALSIVSSSSWKLTLRSINLSRSRLFTKVGLSSLTVNCRFL 127
RYP + LDLSLCPR ND++L+++S++ K +L SI+LSRSR F+ GL SL NC+ L
Sbjct: 73 NRYPHVNHLDLSLCPRINDNSLNVISNTC-KDSLNSIDLSRSRFFSYNGLMSLASNCKNL 131
Query: 128 TEIDLSNGTEMGDAAAAAIAEAKNLERLWLARCKLITDLGIGRIAACCRKLKLLCLKWCI 187
IDLSN TE+ DAAAAA+AE KNLERLWL RCKLITD+GIG IA C+KL+L+ LKWCI
Sbjct: 132 VSIDLSNATELRDAAAAAVAEVKNLERLWLGRCKLITDMGIGCIAVGCKKLRLISLKWCI 191
Query: 188 RVTDLGVELVALKCQEIRTLDLSYLPITEKCLPPVVKLQYLEDLVLEGCHGIDDDGLASV 247
V+DLGV L+A+KC+EIR+LDLSYLPIT KCLP ++KLQ+LED+VLEGC GIDDD LA++
Sbjct: 192 GVSDLGVGLIAVKCKEIRSLDLSYLPITNKCLPSILKLQHLEDIVLEGCFGIDDDSLAAL 251
Query: 248 EYSCKSLKALNLSKCQNISHVGLSSLIKGADYLQQLILAYSFWVSADLSKCLHNFPMLQS 307
++ CKS+KAL++S CQ+ISHVGLSSLI GA LQQL L+YS V+ L+ L MLQS
Sbjct: 252 KHGCKSMKALDISSCQHISHVGLSSLISGAGSLQQLTLSYSCPVTLALANSLKRLSMLQS 311
Query: 308 IKFEDCPVARSGIKAIGNWHGSLKELSLSKCSGVTDEELSFVVQSHKELRKLDITCCRKI 367
+K + C V +G+ AIGNW +L ELSLSKC GVTDE LS +V HK+L+KLDITCCRKI
Sbjct: 312 VKLDGCAVTSAGLTAIGNWCITLSELSLSKCVGVTDEGLSSLVTKHKDLKKLDITCCRKI 371
Query: 368 TYASINSITKTCTSLTSLRMECCKLVSWEAFVLIGQQCQYLEELDITENEVNDEGLKSIS 427
T SI IT +CT+LTSLRME C LV EAFVLIGQ+CQ+LEELD+T+NE++DEGLKSIS
Sbjct: 372 TDVSIAYITNSCTNLTSLRMESCTLVPSEAFVLIGQRCQFLEELDLTDNEIDDEGLKSIS 431
Query: 428 RCSKLSSLKLGICSNITDEGLKHVGSTCSMLKELDLYR 465
RCSKLSSLKLGIC NI+DEGL HVG CS L ELDLYR
Sbjct: 432 RCSKLSSLKLGICLNISDEGLSHVGMKCSKLTELDLYR 469
|
Source: Populus trichocarpa Species: Populus trichocarpa Genus: Populus Family: Salicaceae Order: Malpighiales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|225434419|ref|XP_002277506.1| PREDICTED: F-box/LRR-repeat protein 3-like [Vitis vinifera] | Back alignment and taxonomy information |
|---|
Score = 584 bits (1506), Expect = e-164, Method: Compositional matrix adjust.
Identities = 296/464 (63%), Positives = 358/464 (77%), Gaps = 1/464 (0%)
Query: 2 EAKRKKNSNPFDFLSEEIIFNILDHLNNDPFARKSFSLTCRNFYSIESRHRKILKPLCAE 61
+ K+++ +NPF +++EIIF ILD L +DPF+RKSFSL C++FYS+ESRHRK LKPL ++
Sbjct: 10 QQKQQRFTNPFTLVTDEIIFAILDFLGHDPFSRKSFSLVCKSFYSVESRHRKTLKPLRSD 69
Query: 62 TLSRTSARYPFITQLDLSLCPRANDDALSIVSSSSWKLTLRSINLSRSRLFTKVGLSSLT 121
L R RYP I LDLSLCP D+ ++ S K TLRSI LS S F VG S L
Sbjct: 70 LLRRILLRYPVIDHLDLSLCPLNEGDSWDVILSLC-KSTLRSIKLSPSMFFANVGFSKLV 128
Query: 122 VNCRFLTEIDLSNGTEMGDAAAAAIAEAKNLERLWLARCKLITDLGIGRIAACCRKLKLL 181
+NC L EIDLSN TE D+ AAAIA+AKNLERLWL RCKL++D+GIG IA CRKL+L+
Sbjct: 129 MNCSDLVEIDLSNATEFTDSGAAAIAKAKNLERLWLVRCKLVSDIGIGCIAVGCRKLRLI 188
Query: 182 CLKWCIRVTDLGVELVALKCQEIRTLDLSYLPITEKCLPPVVKLQYLEDLVLEGCHGIDD 241
LKWC+RV DLGV L+A+KC+EIR LDLSYLPIT+KCLP V++LQ+LEDLVL GC ID
Sbjct: 189 NLKWCLRVGDLGVGLIAMKCKEIRCLDLSYLPITKKCLPSVLQLQHLEDLVLVGCFHIDL 248
Query: 242 DGLASVEYSCKSLKALNLSKCQNISHVGLSSLIKGADYLQQLILAYSFWVSADLSKCLHN 301
DGL +++ CKSL+ LN+S C ISH GLS + GA+ L+Q ++Y V+ DL+KCL
Sbjct: 249 DGLTNLKQGCKSLEVLNMSNCPCISHYGLSFITNGAECLRQFNISYGPPVTLDLAKCLQY 308
Query: 302 FPMLQSIKFEDCPVARSGIKAIGNWHGSLKELSLSKCSGVTDEELSFVVQSHKELRKLDI 361
F LQSI+ + C V SG+KAIGNW SLKELSLSKCSGVTDE LS +VQ H+ELRKLDI
Sbjct: 309 FSNLQSIRLDGCIVTCSGMKAIGNWCASLKELSLSKCSGVTDEGLSLIVQGHQELRKLDI 368
Query: 362 TCCRKITYASINSITKTCTSLTSLRMECCKLVSWEAFVLIGQQCQYLEELDITENEVNDE 421
TCCRKIT SINSIT +CT LTSLRME C LV EAFVLIGQ CQ+LEELD+T+NE++DE
Sbjct: 369 TCCRKITQVSINSITNSCTCLTSLRMESCSLVQSEAFVLIGQCCQFLEELDVTDNEIDDE 428
Query: 422 GLKSISRCSKLSSLKLGICSNITDEGLKHVGSTCSMLKELDLYR 465
GLKSI+RCSKLSSLKLGIC ITD+G+ HVG+ C L E+DLYR
Sbjct: 429 GLKSIARCSKLSSLKLGICLKITDDGIAHVGTGCPKLTEIDLYR 472
|
Source: Vitis vinifera Species: Vitis vinifera Genus: Vitis Family: Vitaceae Order: Vitales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|297745808|emb|CBI15864.3| unnamed protein product [Vitis vinifera] | Back alignment and taxonomy information |
|---|
Score = 584 bits (1505), Expect = e-164, Method: Compositional matrix adjust.
Identities = 296/464 (63%), Positives = 358/464 (77%), Gaps = 1/464 (0%)
Query: 2 EAKRKKNSNPFDFLSEEIIFNILDHLNNDPFARKSFSLTCRNFYSIESRHRKILKPLCAE 61
+ K+++ +NPF +++EIIF ILD L +DPF+RKSFSL C++FYS+ESRHRK LKPL ++
Sbjct: 44 QQKQQRFTNPFTLVTDEIIFAILDFLGHDPFSRKSFSLVCKSFYSVESRHRKTLKPLRSD 103
Query: 62 TLSRTSARYPFITQLDLSLCPRANDDALSIVSSSSWKLTLRSINLSRSRLFTKVGLSSLT 121
L R RYP I LDLSLCP D+ ++ S K TLRSI LS S F VG S L
Sbjct: 104 LLRRILLRYPVIDHLDLSLCPLNEGDSWDVILSLC-KSTLRSIKLSPSMFFANVGFSKLV 162
Query: 122 VNCRFLTEIDLSNGTEMGDAAAAAIAEAKNLERLWLARCKLITDLGIGRIAACCRKLKLL 181
+NC L EIDLSN TE D+ AAAIA+AKNLERLWL RCKL++D+GIG IA CRKL+L+
Sbjct: 163 MNCSDLVEIDLSNATEFTDSGAAAIAKAKNLERLWLVRCKLVSDIGIGCIAVGCRKLRLI 222
Query: 182 CLKWCIRVTDLGVELVALKCQEIRTLDLSYLPITEKCLPPVVKLQYLEDLVLEGCHGIDD 241
LKWC+RV DLGV L+A+KC+EIR LDLSYLPIT+KCLP V++LQ+LEDLVL GC ID
Sbjct: 223 NLKWCLRVGDLGVGLIAMKCKEIRCLDLSYLPITKKCLPSVLQLQHLEDLVLVGCFHIDL 282
Query: 242 DGLASVEYSCKSLKALNLSKCQNISHVGLSSLIKGADYLQQLILAYSFWVSADLSKCLHN 301
DGL +++ CKSL+ LN+S C ISH GLS + GA+ L+Q ++Y V+ DL+KCL
Sbjct: 283 DGLTNLKQGCKSLEVLNMSNCPCISHYGLSFITNGAECLRQFNISYGPPVTLDLAKCLQY 342
Query: 302 FPMLQSIKFEDCPVARSGIKAIGNWHGSLKELSLSKCSGVTDEELSFVVQSHKELRKLDI 361
F LQSI+ + C V SG+KAIGNW SLKELSLSKCSGVTDE LS +VQ H+ELRKLDI
Sbjct: 343 FSNLQSIRLDGCIVTCSGMKAIGNWCASLKELSLSKCSGVTDEGLSLIVQGHQELRKLDI 402
Query: 362 TCCRKITYASINSITKTCTSLTSLRMECCKLVSWEAFVLIGQQCQYLEELDITENEVNDE 421
TCCRKIT SINSIT +CT LTSLRME C LV EAFVLIGQ CQ+LEELD+T+NE++DE
Sbjct: 403 TCCRKITQVSINSITNSCTCLTSLRMESCSLVQSEAFVLIGQCCQFLEELDVTDNEIDDE 462
Query: 422 GLKSISRCSKLSSLKLGICSNITDEGLKHVGSTCSMLKELDLYR 465
GLKSI+RCSKLSSLKLGIC ITD+G+ HVG+ C L E+DLYR
Sbjct: 463 GLKSIARCSKLSSLKLGICLKITDDGIAHVGTGCPKLTEIDLYR 506
|
Source: Vitis vinifera Species: Vitis vinifera Genus: Vitis Family: Vitaceae Order: Vitales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|449463292|ref|XP_004149368.1| PREDICTED: F-box/LRR-repeat protein 3-like [Cucumis sativus] | Back alignment and taxonomy information |
|---|
Score = 582 bits (1499), Expect = e-163, Method: Compositional matrix adjust.
Identities = 288/461 (62%), Positives = 367/461 (79%), Gaps = 5/461 (1%)
Query: 9 SNPFDFLSEEIIFNILDHLNNDPFARKSFSLTCRNFYSIESRHRKILKPLCAETLSRTSA 68
S+PFD L+EEIIF ILDHL++DPF+RKSFSL ++FY+ ES HR+ L+PL + + S
Sbjct: 19 SSPFDHLTEEIIFAILDHLHDDPFSRKSFSLLSKSFYAAESLHRRSLRPLHSHPIRTVSP 78
Query: 69 RYPFITQLDLSLCPRANDDALSIVSSSSWKLTLRSINLSRSRLFTKVGLSSLTVNCRFLT 128
RYP I++LDL+LCP D L I S++WK TLRSI+LSRSR F+ VGLS+L +C L
Sbjct: 79 RYPSISKLDLTLCPHVEDSFL-ISVSTAWKTTLRSIDLSRSRSFSNVGLSNLVTSCTGLV 137
Query: 129 EIDLSNGTEMGDAAAAAIAEAKNLERLWLARCKLITDLGIGRIAACCRKLKLLCLKWCIR 188
EI+LSNG + D+ +AEAKNLE+LWL+RCK ITD+GIG +A C+KLKLLCL WC+
Sbjct: 138 EINLSNGVALTDSVIKVLAEAKNLEKLWLSRCKSITDMGIGCVAVGCKKLKLLCLNWCLH 197
Query: 189 VTDLGVELVALKCQEIRTLDLSYLPITEKCLPPVVKLQYLEDLVLEGCHGIDDDGLASVE 248
+TDLGV L+A KC+E+R+LDLS+LPITEKCLP +++LQ+LE+L+LE CHGIDD+GL +++
Sbjct: 198 ITDLGVGLIATKCKELRSLDLSFLPITEKCLPTILQLQHLEELILEECHGIDDEGLEALK 257
Query: 249 YSCK--SLKALNLSKCQNISHVGLSSLIKGADYLQQLILAY--SFWVSADLSKCLHNFPM 304
+CK SLK LNLS+C +ISH GLSSLI G++ LQ+L L+Y S ++ D++KCLHNF
Sbjct: 258 RNCKRNSLKFLNLSRCPSISHSGLSSLIIGSENLQKLNLSYGSSVSITTDMAKCLHNFSG 317
Query: 305 LQSIKFEDCPVARSGIKAIGNWHGSLKELSLSKCSGVTDEELSFVVQSHKELRKLDITCC 364
LQSIK + C + SG+K I NW SLKELSLSKC+GVTDE LS +VQ HK+LRKLDITCC
Sbjct: 318 LQSIKLDCCSLTTSGVKTIANWRASLKELSLSKCAGVTDECLSILVQKHKQLRKLDITCC 377
Query: 365 RKITYASINSITKTCTSLTSLRMECCKLVSWEAFVLIGQQCQYLEELDITENEVNDEGLK 424
RKITY SINSIT +C+ L SL+ME C LV EA+VLIGQ+C YLEELD+T+NE+++EGLK
Sbjct: 378 RKITYGSINSITSSCSFLVSLKMESCSLVPREAYVLIGQRCPYLEELDLTDNEIDNEGLK 437
Query: 425 SISRCSKLSSLKLGICSNITDEGLKHVGSTCSMLKELDLYR 465
SIS+CS+LS LKLGIC NI D+GL H+ S C +KELDLYR
Sbjct: 438 SISKCSRLSVLKLGICLNINDDGLCHIASGCPKIKELDLYR 478
|
Source: Cucumis sativus Species: Cucumis sativus Genus: Cucumis Family: Cucurbitaceae Order: Cucurbitales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|449530965|ref|XP_004172462.1| PREDICTED: LOW QUALITY PROTEIN: F-box/LRR-repeat protein 3-like [Cucumis sativus] | Back alignment and taxonomy information |
|---|
Score = 579 bits (1493), Expect = e-163, Method: Compositional matrix adjust.
Identities = 286/467 (61%), Positives = 367/467 (78%), Gaps = 3/467 (0%)
Query: 1 MEAKRKKNSNPFDFLSEEIIFNILDHLNNDPFARKSFSLTCRNFYSIESRHRKILKPLCA 60
+ K S+PFD L+EEIIF ILDHL++DPF+RKS SL ++FY+ ES HR+ L+PL +
Sbjct: 11 LNKKLHSFSSPFDHLTEEIIFAILDHLHDDPFSRKSVSLLSKSFYAAESLHRRSLRPLHS 70
Query: 61 ETLSRTSARYPFITQLDLSLCPRANDDALSIVSSSSWKLTLRSINLSRSRLFTKVGLSSL 120
+ S RYP I++LDL+LCP D L I S++WK TLRSI+LSRSR F+ VGLS+L
Sbjct: 71 HPIQTVSPRYPSISKLDLTLCPHVEDSFL-ISVSTAWKTTLRSIDLSRSRSFSNVGLSNL 129
Query: 121 TVNCRFLTEIDLSNGTEMGDAAAAAIAEAKNLERLWLARCKLITDLGIGRIAACCRKLKL 180
+C L EI+LSNG + D+ +AEAKNLE+LWL+RCK ITD+GIG +A C+KLKL
Sbjct: 130 VTSCTGLVEINLSNGVALTDSVIKVLAEAKNLEKLWLSRCKSITDMGIGCVAVGCKKLKL 189
Query: 181 LCLKWCIRVTDLGVELVALKCQEIRTLDLSYLPITEKCLPPVVKLQYLEDLVLEGCHGID 240
LCL WC+ +TDLGV L+A KC+E+R+LDLS+LPITEKCLP +++LQ+LE+L+LE CHGID
Sbjct: 190 LCLNWCLHITDLGVGLIATKCKELRSLDLSFLPITEKCLPTILQLQHLEELILEECHGID 249
Query: 241 DDGLASVEYSCK--SLKALNLSKCQNISHVGLSSLIKGADYLQQLILAYSFWVSADLSKC 298
D+GL +++ +CK SLK LNLS+C +ISH GLSSLI G++ LQ+L L+Y ++ D++KC
Sbjct: 250 DEGLEALQRNCKRNSLKFLNLSRCPSISHSGLSSLIIGSEDLQKLNLSYGSSITTDMAKC 309
Query: 299 LHNFPMLQSIKFEDCPVARSGIKAIGNWHGSLKELSLSKCSGVTDEELSFVVQSHKELRK 358
LHNF LQSIK + C + SG+K + NW SLKELSLSKC+GVTDE LS +VQ HK+LRK
Sbjct: 310 LHNFSGLQSIKLDCCSLTTSGVKPLXNWRASLKELSLSKCAGVTDECLSILVQKHKQLRK 369
Query: 359 LDITCCRKITYASINSITKTCTSLTSLRMECCKLVSWEAFVLIGQQCQYLEELDITENEV 418
LDITCCRKITY SINSIT +C+ L SL+ME C LV EA+VLIGQ+C YLEELD+T+NE+
Sbjct: 370 LDITCCRKITYGSINSITSSCSFLVSLKMESCSLVPREAYVLIGQRCPYLEELDLTDNEI 429
Query: 419 NDEGLKSISRCSKLSSLKLGICSNITDEGLKHVGSTCSMLKELDLYR 465
++EGLKSIS+CS+LS LKLGIC NI D+GL H+ S C +KELDLYR
Sbjct: 430 DNEGLKSISKCSRLSVLKLGICLNINDDGLCHIASACPKIKELDLYR 476
|
Source: Cucumis sativus Species: Cucumis sativus Genus: Cucumis Family: Cucurbitaceae Order: Cucurbitales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|255571507|ref|XP_002526701.1| F-box protein, atfbl3, putative [Ricinus communis] gi|223534001|gb|EEF35723.1| F-box protein, atfbl3, putative [Ricinus communis] | Back alignment and taxonomy information |
|---|
Score = 579 bits (1492), Expect = e-162, Method: Compositional matrix adjust.
Identities = 300/465 (64%), Positives = 370/465 (79%), Gaps = 1/465 (0%)
Query: 1 MEAKRKKNSNPFDFLSEEIIFNILDHLNNDPFARKSFSLTCRNFYSIESRHRKILKPLCA 60
+E N+N FD LSEEIIF+IL+ L+ +P RKSFSL C++FY+IES+HRKILKPL
Sbjct: 7 IEFNTINNNNLFDLLSEEIIFSILEFLDTNPLDRKSFSLVCKSFYTIESKHRKILKPLRQ 66
Query: 61 ETLSRTSARYPFITQLDLSLCPRANDDALSIVSSSSWKLTLRSINLSRSRLFTKVGLSSL 120
E L R RYP +T LDLSLCPR ND +L+I+S+S K +L+SI+LSRSR F+ GL+SL
Sbjct: 67 EHLPRILNRYPHVTHLDLSLCPRINDSSLTIISNSC-KNSLKSIDLSRSRFFSYNGLTSL 125
Query: 121 TVNCRFLTEIDLSNGTEMGDAAAAAIAEAKNLERLWLARCKLITDLGIGRIAACCRKLKL 180
+NC+ L IDLSN TE+ DAAA+A+AEAKNLERLWL RCKLITD+G+G IA C+KL+L
Sbjct: 126 ALNCKNLVNIDLSNATELRDAAASAVAEAKNLERLWLGRCKLITDIGVGCIAVGCKKLRL 185
Query: 181 LCLKWCIRVTDLGVELVALKCQEIRTLDLSYLPITEKCLPPVVKLQYLEDLVLEGCHGID 240
+ LKWC+ VTDLGV L+A+KC+EIR+LDLSYLPIT KCLP ++KL+ LEDLVLEGC GID
Sbjct: 186 ISLKWCLGVTDLGVGLIAVKCKEIRSLDLSYLPITNKCLPSILKLKSLEDLVLEGCFGID 245
Query: 241 DDGLASVEYSCKSLKALNLSKCQNISHVGLSSLIKGADYLQQLILAYSFWVSADLSKCLH 300
D+ L + ++ CKSLK L++S CQNISHVGLSSLI GA L+QL LAY V+ L+ L
Sbjct: 246 DESLTAFKHGCKSLKTLDMSSCQNISHVGLSSLIGGAGGLEQLTLAYGSPVTLALANSLK 305
Query: 301 NFPMLQSIKFEDCPVARSGIKAIGNWHGSLKELSLSKCSGVTDEELSFVVQSHKELRKLD 360
+LQS+K + C + +G+KA+GNW SLKELSLSKC GVTDE LS +V H++LRKLD
Sbjct: 306 QLSVLQSVKLDGCMITSAGLKALGNWCISLKELSLSKCVGVTDEGLSCLVTKHRDLRKLD 365
Query: 361 ITCCRKITYASINSITKTCTSLTSLRMECCKLVSWEAFVLIGQQCQYLEELDITENEVND 420
ITCCRKIT SI+ IT +CT+LTSLRME C LVS EAFVLIGQ+CQ LEELD+T+NE++D
Sbjct: 366 ITCCRKITDVSISHITSSCTNLTSLRMESCTLVSREAFVLIGQRCQLLEELDLTDNEIDD 425
Query: 421 EGLKSISRCSKLSSLKLGICSNITDEGLKHVGSTCSMLKELDLYR 465
EGLKS+S C KL+SLKLGIC NI+DEGL +VG C+ L ELDLYR
Sbjct: 426 EGLKSVSSCLKLASLKLGICLNISDEGLAYVGKHCTRLTELDLYR 470
|
Source: Ricinus communis Species: Ricinus communis Genus: Ricinus Family: Euphorbiaceae Order: Malpighiales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|224091068|ref|XP_002309168.1| predicted protein [Populus trichocarpa] gi|222855144|gb|EEE92691.1| predicted protein [Populus trichocarpa] | Back alignment and taxonomy information |
|---|
Score = 568 bits (1464), Expect = e-159, Method: Compositional matrix adjust.
Identities = 297/457 (64%), Positives = 359/457 (78%), Gaps = 1/457 (0%)
Query: 9 SNPFDFLSEEIIFNILDHLNNDPFARKSFSLTCRNFYSIESRHRKILKPLCAETLSRTSA 68
+N FD LSEEIIF ILD N +PF RKSFSL C++FY ES+HRK LKPL E L R
Sbjct: 12 NNFFDLLSEEIIFTILDFTNTNPFDRKSFSLVCKSFYITESKHRKNLKPLRQEHLPRILN 71
Query: 69 RYPFITQLDLSLCPRANDDALSIVSSSSWKLTLRSINLSRSRLFTKVGLSSLTVNCRFLT 128
RYP + LDLSLC R N+ +L+++S+ K +L SI+LSRSR F+ GL SL +NC+ L
Sbjct: 72 RYPNVNHLDLSLCLRLNNSSLTVISNIC-KDSLNSIDLSRSRSFSYNGLMSLALNCKNLV 130
Query: 129 EIDLSNGTEMGDAAAAAIAEAKNLERLWLARCKLITDLGIGRIAACCRKLKLLCLKWCIR 188
IDLSN TE+ DAAAAA+AEAKNLERLWL RCKLITD GIG IA C+KL+L+ LKWCI
Sbjct: 131 SIDLSNATELRDAAAAAVAEAKNLERLWLVRCKLITDTGIGCIAVGCKKLRLISLKWCIG 190
Query: 189 VTDLGVELVALKCQEIRTLDLSYLPITEKCLPPVVKLQYLEDLVLEGCHGIDDDGLASVE 248
V+DLGV L+A+KC+EIR+LDLSYLPIT KCLP ++KLQYLE + LEGC GIDDD LA+++
Sbjct: 191 VSDLGVGLIAVKCKEIRSLDLSYLPITNKCLPSILKLQYLEHIALEGCFGIDDDSLAALK 250
Query: 249 YSCKSLKALNLSKCQNISHVGLSSLIKGADYLQQLILAYSFWVSADLSKCLHNFPMLQSI 308
+ CKSLKAL++S CQNISHVGLSSL GA+ LQQL L Y V+ L+ L + +LQS+
Sbjct: 251 HGCKSLKALDMSSCQNISHVGLSSLTSGAEGLQQLTLGYGSPVTLALANSLRSLSILQSV 310
Query: 309 KFEDCPVARSGIKAIGNWHGSLKELSLSKCSGVTDEELSFVVQSHKELRKLDITCCRKIT 368
K + CPV +G+KAIGNW SL ELSLSKC GVTDE LS +V HK+L+KLDITCCRKIT
Sbjct: 311 KLDGCPVTSAGLKAIGNWCISLSELSLSKCLGVTDEGLSSLVTKHKDLKKLDITCCRKIT 370
Query: 369 YASINSITKTCTSLTSLRMECCKLVSWEAFVLIGQQCQYLEELDITENEVNDEGLKSISR 428
SI IT +CT+LTSLRME C LV EAFV IGQQCQ+LEELD+T+NE++D+GLKSIS+
Sbjct: 371 DVSIAYITSSCTNLTSLRMESCTLVPSEAFVFIGQQCQFLEELDLTDNEIDDKGLKSISK 430
Query: 429 CSKLSSLKLGICSNITDEGLKHVGSTCSMLKELDLYR 465
CSKLSSLK+GIC NI+D+GL H+G CS L +LDLYR
Sbjct: 431 CSKLSSLKIGICLNISDKGLSHIGMKCSKLADLDLYR 467
|
Source: Populus trichocarpa Species: Populus trichocarpa Genus: Populus Family: Salicaceae Order: Malpighiales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|225439576|ref|XP_002265215.1| PREDICTED: F-box/LRR-repeat protein 3 [Vitis vinifera] gi|297735597|emb|CBI18091.3| unnamed protein product [Vitis vinifera] | Back alignment and taxonomy information |
|---|
Score = 547 bits (1410), Expect = e-153, Method: Compositional matrix adjust.
Identities = 293/465 (63%), Positives = 353/465 (75%), Gaps = 4/465 (0%)
Query: 4 KRKK---NSNPFDFLSEEIIFNILDHLNNDPFARKSFSLTCRNFYSIESRHRKILKPLCA 60
KR+K + N FD L+EEI+F ILD L+ +P +KSFSL C+ FY IESRHRK LKPL +
Sbjct: 2 KRQKGVVDENIFDVLTEEIVFTILDFLDPNPLDKKSFSLACKAFYGIESRHRKALKPLRS 61
Query: 61 ETLSRTSARYPFITQLDLSLCPRANDDALSIVSSSSWKLTLRSINLSRSRLFTKVGLSSL 120
E L RYP + LDLSLCPR D++L+I+S K TLRSI+LS+SR F+ VGL +L
Sbjct: 62 EHLITVLKRYPHLEHLDLSLCPRITDNSLTIISVLC-KSTLRSIDLSQSRFFSHVGLWNL 120
Query: 121 TVNCRFLTEIDLSNGTEMGDAAAAAIAEAKNLERLWLARCKLITDLGIGRIAACCRKLKL 180
NC L EIDLSN TE+ DA AAAIAEAKNLERLWLARCKLITD+GIG IA C+KL+
Sbjct: 121 ATNCSGLVEIDLSNATELRDAGAAAIAEAKNLERLWLARCKLITDMGIGCIAVGCKKLRS 180
Query: 181 LCLKWCIRVTDLGVELVALKCQEIRTLDLSYLPITEKCLPPVVKLQYLEDLVLEGCHGID 240
+ LKWC+ V DLGV L+A+KC++IR LDLSYLPIT KCLP +++LQYLEDL+L GC ID
Sbjct: 181 ISLKWCLGVGDLGVGLIAVKCKQIRHLDLSYLPITNKCLPCILQLQYLEDLILVGCFSID 240
Query: 241 DDGLASVEYSCKSLKALNLSKCQNISHVGLSSLIKGADYLQQLILAYSFWVSADLSKCLH 300
DD L ++++ CKSLK L++S CQN+SHVGLSSL A LQQL LAY V+ L+ L
Sbjct: 241 DDSLVALKHGCKSLKKLDMSSCQNVSHVGLSSLTSDARSLQQLALAYGSPVTHALADSLQ 300
Query: 301 NFPMLQSIKFEDCPVARSGIKAIGNWHGSLKELSLSKCSGVTDEELSFVVQSHKELRKLD 360
+ MLQSIK + C V +G+K IGN L+E+SLSKC GVTDE LS +V H++LRKLD
Sbjct: 301 DLSMLQSIKLDGCAVTYAGLKGIGNSCALLREVSLSKCLGVTDEGLSSLVMKHRDLRKLD 360
Query: 361 ITCCRKITYASINSITKTCTSLTSLRMECCKLVSWEAFVLIGQQCQYLEELDITENEVND 420
+TCCRKIT SI IT +C +LTSL+ME C LV EAFVLIGQ+C LEELD+T+NE++D
Sbjct: 361 VTCCRKITQVSIAYITNSCPALTSLKMESCTLVPSEAFVLIGQRCLCLEELDLTDNEIDD 420
Query: 421 EGLKSISRCSKLSSLKLGICSNITDEGLKHVGSTCSMLKELDLYR 465
EGLKSISRC KL+SLKLGIC NITDEGL HVG CS L ELDLYR
Sbjct: 421 EGLKSISRCFKLTSLKLGICLNITDEGLGHVGMCCSKLIELDLYR 465
|
Source: Vitis vinifera Species: Vitis vinifera Genus: Vitis Family: Vitaceae Order: Vitales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|356551924|ref|XP_003544322.1| PREDICTED: F-box/LRR-repeat protein 3-like [Glycine max] | Back alignment and taxonomy information |
|---|
Score = 546 bits (1406), Expect = e-152, Method: Compositional matrix adjust.
Identities = 277/461 (60%), Positives = 356/461 (77%), Gaps = 2/461 (0%)
Query: 7 KNSNPFDFLSEEIIFNILDHLNNDPFARKSFSLTCRNFYSIESRHRKILKPLCAETLSRT 66
K +N + L +E+++ ILDHL+ DPFARKS S +C++F+++E+ HR LKP E L RT
Sbjct: 9 KTTNLLNHLVKELLYAILDHLDEDPFARKSLSQSCKSFHALEATHRTNLKPRRLEFLPRT 68
Query: 67 SARYPFITQLDLSLCPRANDDALSIVSSSSWKLTLRSINLSRSRLFTKVGLSSLTVNCRF 126
RY I+ LDL+LCP +D+ L +S + W +LRSI+LS+SRLF+ VGLS+L +NC
Sbjct: 69 LHRYRSISHLDLTLCPCVDDNTLKSLSLA-WNSSLRSIDLSKSRLFSHVGLSALAMNCTC 127
Query: 127 LTEIDLSNGTEMGDAAAAAIAEAKNLERLWLARCKLITDLGIGRIAACCRKLKLLCLKWC 186
L E DLSN ++ D AA AIAEA NLERL L RCK ITDLGIG IA C KL+ + L+WC
Sbjct: 128 LVEADLSNRPDLTDVAAKAIAEAVNLERLCLGRCKGITDLGIGCIAVRCSKLRHVGLRWC 187
Query: 187 IRVTDLGVELVALKCQEIRTLDLSYLPITEKCLPPVVKLQYLEDLVLEGCHGIDDDGLAS 246
IRVTD G L+A+KC+EIR+LDLSYLPITEKCL +++L++LEDL+LE C GI+D GLA+
Sbjct: 188 IRVTDFGAGLIAIKCKEIRSLDLSYLPITEKCLNHILQLEHLEDLILEHCLGIEDHGLAT 247
Query: 247 VEYSCKSLKALNLSKCQNISHVGLSSLIKGADYLQQLILAYSFWVSADLSKCLHNFPMLQ 306
++ SCKS+K LNLSKCQNI H+G++SL G+ L++LIL+ S V+ DL+KCL +F LQ
Sbjct: 248 LQASCKSMKMLNLSKCQNIGHIGIASLTSGSQNLEKLILSSSVIVTTDLAKCLQSFSRLQ 307
Query: 307 SIKFEDCPVARSGIKAIGNWHGSLKELSLSKCSGVTDEELSFVVQSHKELRKLDITCCRK 366
S+K + C +SG+KAIGN SLKEL+LSKC GVTDE L F+VQ HK+L KLDITCC
Sbjct: 308 SVKLDSCLGTKSGLKAIGNLGASLKELNLSKCVGVTDENLPFLVQPHKDLEKLDITCCHT 367
Query: 367 ITYASINSITKTCTSLTSLRMECCKLVSWEAFVLIGQQCQYLEELDITENEVNDEGLKSI 426
IT+ASI+S+T +C LTSLRME C LVS E F+ IG +CQ LEELD+T+ E++D+GL+SI
Sbjct: 368 ITHASISSLTNSCLRLTSLRMESCSLVSREGFLFIG-RCQLLEELDVTDTEIDDQGLQSI 426
Query: 427 SRCSKLSSLKLGICSNITDEGLKHVGSTCSMLKELDLYRFS 467
SRC+KLSSLKLGICS ITD GLKH+ S+CS LK+LDLYR S
Sbjct: 427 SRCTKLSSLKLGICSMITDNGLKHIASSCSKLKQLDLYRSS 467
|
Source: Glycine max Species: Glycine max Genus: Glycine Family: Fabaceae Order: Fabales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
Prediction of Gene Ontology (GO) Terms
Close Homologs with Gene Ontology terms Detected by BLAST
Original result of BLAST against Gene Ontology (AMIGO)
| ID |
Alignment graph |
Length |
Definition |
Q cover |
H cover |
Identity |
E-value |
| Query | 468 | ||||||
| TAIR|locus:2149805 | 665 | AT5G01720 "AT5G01720" [Arabido | 0.989 | 0.696 | 0.546 | 2.1e-125 | |
| TAIR|locus:2143320 | 642 | AT5G27920 "AT5G27920" [Arabido | 0.957 | 0.697 | 0.322 | 3.3e-63 | |
| TAIR|locus:505006471 | 610 | AT4G15475 "AT4G15475" [Arabido | 0.829 | 0.636 | 0.276 | 8.7e-31 | |
| TAIR|locus:2166978 | 405 | AT5G23340 [Arabidopsis thalian | 0.711 | 0.822 | 0.266 | 1.7e-21 | |
| UNIPROTKB|F1PWK1 | 422 | FBXL2 "Uncharacterized protein | 0.576 | 0.639 | 0.278 | 1.3e-20 | |
| UNIPROTKB|Q9UKC9 | 423 | FBXL2 "F-box/LRR-repeat protei | 0.576 | 0.638 | 0.278 | 1.8e-20 | |
| UNIPROTKB|Q5R3Z8 | 423 | FBXL2 "F-box/LRR-repeat protei | 0.576 | 0.638 | 0.278 | 1.8e-20 | |
| TAIR|locus:2145512 | 623 | EBF2 "EIN3-binding F box prote | 0.638 | 0.479 | 0.261 | 1.9e-20 | |
| UNIPROTKB|Q58DG6 | 436 | FBXL20 "F-box/LRR-repeat prote | 0.506 | 0.543 | 0.290 | 2.7e-20 | |
| UNIPROTKB|Q96IG2 | 436 | FBXL20 "F-box/LRR-repeat prote | 0.506 | 0.543 | 0.290 | 2.7e-20 |
| TAIR|locus:2149805 AT5G01720 "AT5G01720" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 1232 (438.7 bits), Expect = 2.1e-125, P = 2.1e-125
Identities = 254/465 (54%), Positives = 322/465 (69%)
Query: 2 EAKRKKNSNPFDFLSEEIIFNILDHLNNDPFARKSFSLTCRNFYSIESRHRKILKPLCAE 61
+ K+ + PFD LSEE++F ILD ++ +P KSFSLTC++FY +ES+HR LKPL ++
Sbjct: 3 KVKQIRVLKPFDLLSEELVFIILDLISPNPSDLKSFSLTCKSFYQLESKHRGSLKPLRSD 62
Query: 62 TLSRTSARYPFITQLDLSLCPRANDDALSIVSSSSWKLTLRSINLSRSRLFTKVGLSSLT 121
L R RY T LDL+ CPR D ALS+V S TLRS++LSRS F+ GL L
Sbjct: 63 YLPRILTRYRNTTDLDLTFCPRVTDYALSVVGCLSGP-TLRSLDLSRSGSFSAAGLLRLA 121
Query: 122 VNCRFLTEIDLSNGTEMGDXXXXXXXXXKNLERLWLARCKLITDLGIGRIAAXXXXXXXX 181
+ C L EIDLSN TEM D ++LERL L RCK++TD+GIG IA
Sbjct: 122 LKCVNLVEIDLSNATEMRDADAAVVAEARSLERLKLGRCKMLTDMGIGCIAVGCKKLNTV 181
Query: 182 XXXXXIRVTDLGVELVALKCQEIRTLDLSYLPITEKCLPPVVKLQYLEDLVLEGCHGIDD 241
+ V DLGV L+A+KC++IRTLDLSYLPIT KCL ++KLQ+LE+L+LEGC G+DD
Sbjct: 182 SLKWCVGVGDLGVGLLAVKCKDIRTLDLSYLPITGKCLHDILKLQHLEELLLEGCFGVDD 241
Query: 242 DGLASVEYSCKSLKALNLSKCQNISHVGLSSLIKGADYLQQLILAY-SFWVSADLSKCLH 300
D L S+ + CKSLK L+ S CQN++H GL+SL+ GA YLQ+L L++ S +S D + L
Sbjct: 242 DSLKSLRHDCKSLKKLDASSCQNLTHRGLTSLLSGAGYLQRLDLSHCSSVISLDFASSLK 301
Query: 301 NFPMLQSIKFEDCPVARSGIKAIGNWHGSLKELSLSKCSGVTDEELSFVVQSHKELRKLD 360
LQSI+ + C V G+KAIG SLKE+SLSKC VTDE LS +V K+LRKLD
Sbjct: 302 KVSALQSIRLDGCSVTPDGLKAIGTLCNSLKEVSLSKCVSVTDEGLSSLVMKLKDLRKLD 361
Query: 361 ITCCRKITYASINSITKTCTSLTSLRMECCKLVSWEAFVLIGQQCQYLEELDITENEVND 420
ITCCRK++ SI I +C L SL+ME C LVS EAF LIGQ+C+ LEELD+T+NE++D
Sbjct: 362 ITCCRKLSRVSITQIANSCPLLVSLKMESCSLVSREAFWLIGQKCRLLEELDLTDNEIDD 421
Query: 421 EGLKSISRCSKLSSLKLGICSNITDEGLKHVGSTCSMLKELDLYR 465
EGLKSIS C LSSLKLGIC NITD+GL ++G CS L+ELDLYR
Sbjct: 422 EGLKSISSCLSLSSLKLGICLNITDKGLSYIGMGCSNLRELDLYR 466
|
|
| TAIR|locus:2143320 AT5G27920 "AT5G27920" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 645 (232.1 bits), Expect = 3.3e-63, P = 3.3e-63
Identities = 147/456 (32%), Positives = 255/456 (55%)
Query: 15 LSEEIIFNILDHLNNDPFARKSFSLTCRNFYSIESRHRKILKPLCAETLSRTSARYPFIT 74
LSE+++ + + L DP RK++ L ++F ++S R ++ L E L +YP ++
Sbjct: 11 LSEDLLVRVYECL--DPPCRKTWRLISKDFLRVDSLTRTTIRILRVEFLPTLLFKYPNLS 68
Query: 75 QLDLSLCPRANDDA---LSIVSSSSWKLTLRSINLSRSRLFTKVGLSSLTVNCRFLTEID 131
LDLS+CP+ +DD L++ + S L ++S+NLSRS GL +L C L +D
Sbjct: 69 SLDLSVCPKLDDDVVLRLALDGAIS-TLGIKSLNLSRSTAVRARGLETLARMCHALERVD 127
Query: 132 LSNGTEMGDXXXXXXXXXKNLERLWLARCKLITDLGIGRIAAXXXXXXXXXXXXXIRVTD 191
+S+ GD L L + +C ++D+G+ RI + ++D
Sbjct: 128 VSHCWGFGDREAAALSSATGLRELKMDKCLSLSDVGLARIVVGCSNLNKISLKWCMEISD 187
Query: 192 LGVELVALKCQEIRTLDLSYLPITEKCLPPVVKLQYLEDLVLEGCHGIDDDGLASVEYSC 251
LG++L+ C+ +++LD+SYL IT + + L LE L + C IDD GL +E
Sbjct: 188 LGIDLLCKICKGLKSLDVSYLKITNDSIRSIALLVKLEVLDMVSCPLIDDGGLQFLENGS 247
Query: 252 KSLKALNLSKCQNISHVGLSSLIKGADYLQQLILAYSFW-VSADLSKCLHNFPMLQSIKF 310
SL+ +++++C +S GL S+++G +Q L ++ VS K + L++I
Sbjct: 248 PSLQEVDVTRCDRVSLSGLISIVRGHPDIQLLKASHCVSEVSGSFLKYIKGLKHLKTIWI 307
Query: 311 EDCPVARSGIKAIGNWHGSLKELSLSKCSGVTDEELSFVVQSHKELRKLDITCCRKITYA 370
+ V+ S + ++ + SL E+ LS+C VTD + + ++ L+ L++ CC +T
Sbjct: 308 DGAHVSDSSLVSLSSSCRSLMEIGLSRCVDVTDIGMISLARNCLNLKTLNLACCGFVTDV 367
Query: 371 SINSITKTCTSLTSLRMECCKLVSWEAFVLIGQQCQYLEELDITE-NEVNDEGLKSISRC 429
+I+++ ++C +L +L++E C L++ + +G ++ELD+T+ VND GL+ IS+C
Sbjct: 368 AISAVAQSCRNLGTLKLESCHLITEKGLQSLGCYSMLVQELDLTDCYGVNDRGLEYISKC 427
Query: 430 SKLSSLKLGICSNITDEGLKHVGSTCSMLKELDLYR 465
S L LKLG+C+NI+D+G+ H+GS CS L ELDLYR
Sbjct: 428 SNLQRLKLGLCTNISDKGIFHIGSKCSKLLELDLYR 463
|
|
| TAIR|locus:505006471 AT4G15475 "AT4G15475" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 345 (126.5 bits), Expect = 8.7e-31, P = 8.7e-31
Identities = 111/402 (27%), Positives = 193/402 (48%)
Query: 70 YPFITQLDLSLCPRANDDALSIVSSSSWKLTLRSINLSRSRLFTKVGLSSLTVNCRFLTE 129
+P I L L CP N ++ + S + +L+S++L + + GL+++ C+ L E
Sbjct: 139 FPRIENLSLIWCP--NVSSVGLCSLAQKCTSLKSLDLQGCYVGDQ-GLAAVGKFCKQLEE 195
Query: 130 IDLS--NG-TEMGDXXXXXXXXXKNLERLWLARCKLITDLGIGRIAAXXXXXXXXXXXXX 186
++L G T++G K+L+ + +A ITDL + + +
Sbjct: 196 LNLRFCEGLTDVG-VIDLVVGCSKSLKSIGVAASAKITDLSLEAVGSHCKLLEVLYLDSE 254
Query: 187 IRVTDLGVELVALKCQEIRTLDLSYLPITEKCLPPVVKL-QYLEDLVLEGCHGIDDDGLA 245
+ D G+ VA C ++ L L + +T+ V +L LE L L D G+
Sbjct: 255 Y-IHDKGLIAVAQGCHRLKNLKLQCVSVTDVAFAAVGELCTSLERLALYSFQHFTDKGMR 313
Query: 246 SVEYSCKSLKALNLSKCQNISHVGLSSLIKGADYLQQLILAYSFWVSADLSKCL-HNFPM 304
++ K LK L LS C +S GL ++ G L+++ + + + + + P
Sbjct: 314 AIGKGSKKLKDLTLSDCYFVSCKGLEAIAHGCKELERVEINGCHNIGTRGIEAIGKSCPR 373
Query: 305 LQSIKFEDCP-VARSGIKAIGNWHGSLKELSLSKCSGVTDEELSFVVQSHKELRKLDITC 363
L+ + C + S ++ IG SL+ L L CSG+ D + + + + L+KL I
Sbjct: 374 LKELALLYCQRIGNSALQEIGKGCKSLEILHLVDCSGIGDIAMCSIAKGCRNLKKLHIRR 433
Query: 364 CRKITYASINSITKTCTSLTSLRMECCKLVSWEAFVLIGQQCQYLEELDITE-NEVNDEG 422
C +I I SI K C SLT L + C V +A + IG+ C L++L+++ N+++D G
Sbjct: 434 CYEIGNKGIISIGKHCKSLTELSLRFCDKVGNKALIAIGKGCS-LQQLNVSGCNQISDAG 492
Query: 423 LKSISR-CSKLSSLKLGICSNITDEGLKHVGSTCSMLKELDL 463
+ +I+R C +L+ L + + NI D L +G C MLK+L L
Sbjct: 493 ITAIARGCPQLTHLDISVLQNIGDMPLAELGEGCPMLKDLVL 534
|
|
| TAIR|locus:2166978 AT5G23340 [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 270 (100.1 bits), Expect = 1.7e-21, P = 1.7e-21
Identities = 96/360 (26%), Positives = 162/360 (45%)
Query: 97 WKLTLRSINLSRSRLFTKVGLSSLT-VNCRF--LTEIDLSNGTEMG-------DXXXXXX 146
W L L+S + R +L + G L + RF + E+DLS
Sbjct: 38 W-LNLQSTD--RKKLAARAGPHMLRRLASRFTQIVELDLSQSISRSFYPGVTDSDLAVIS 94
Query: 147 XXXKNLERLWLARCKLITDLGIGRIAAXXXXXXXXXXXXXIRVTDLGVELVALKCQEIRT 206
K L L L CK ITD G+ I +++D G+ VA C ++R
Sbjct: 95 EGFKFLRVLNLHNCKGITDTGLASIGRCLSLLQFLDVSYCRKLSDKGLSAVAEGCHDLRA 154
Query: 207 LDLSYLP-ITEKCLPPVV-KLQYLEDLVLEGCHGIDDDGLASVEYSCKSLKALNLSKCQN 264
L L+ IT++ L + + + LE L L+GC I D GLA + C+ +K+L+++KC N
Sbjct: 155 LHLAGCRFITDESLKSLSERCRDLEALGLQGCTNITDSGLADLVKGCRKIKSLDINKCSN 214
Query: 265 ISHVGLSSLIKG-ADYLQQLILAYSFWVSADLSKCLHNF-PMLQSIKFEDC-PVARSGIK 321
+ G+SS+ K A L+ L L + V + L F L+++ C ++ I
Sbjct: 215 VGDAGVSSVAKACASSLKTLKLLDCYKVGNESISSLAQFCKNLETLIIGGCRDISDESIM 274
Query: 322 AIGN-WHGSLKELSLSKCSGVTDEELSFVVQSHKELRKLDITCCRKITYASINSI-TKTC 379
+ + SLK L + C ++D LS +++ K L LDI CC ++T + + +
Sbjct: 275 LLADSCKDSLKNLRMDWCLNISDSSLSCILKQCKNLEALDIGCCEEVTDTAFRDLGSDDV 334
Query: 380 TSLTSLRMECCKLVSWEAFVLIGQQCQYLEELDI------TENEVNDEGLKSISRCSKLS 433
L L++ C ++ + +C LE +D+ TE ++ GL+ +C K++
Sbjct: 335 LGLKVLKVSNCTKITVTGIGKLLDKCSSLEYIDVRSLPHVTEVRCSEAGLE-FPKCCKVN 393
|
|
| UNIPROTKB|F1PWK1 FBXL2 "Uncharacterized protein" [Canis lupus familiaris (taxid:9615)] | Back alignment and assigned GO terms |
|---|
Score = 264 (98.0 bits), Expect = 1.3e-20, P = 1.3e-20
Identities = 78/280 (27%), Positives = 136/280 (48%)
Query: 194 VELVALKCQE-IRTLDL-SYLPITEKCLPPVVK-LQYLEDLVLEGCHGIDDDGLASVEYS 250
VE ++ +C +R L L + + + L + + +E L L GC I D S+
Sbjct: 68 VENISKRCGGFLRKLSLRGCIGVGDSSLKTFAQNCRNIEHLNLNGCTKITDSTCYSLSRF 127
Query: 251 CKSLKALNLSKCQNISHVGLSSLIKGADYLQQLILAYSFWVSAD-LSKCLHNFPMLQSIK 309
C LK L+L+ C +I++ L + +G L+ L L++ ++ D + + L+++
Sbjct: 128 CSKLKHLDLTSCVSITNSSLKGISEGCRNLEYLNLSWCDQITKDGIEALVRGCRGLKALL 187
Query: 310 FEDCP-VARSGIKAIGNWHGSLKELSLSKCSGVTDEELSFVVQSHKELRKLDITCCRKIT 368
C + +K I N+ L L+L CS +TDE + + + L+ L ++ C +T
Sbjct: 188 LRGCTQLEDEALKHIQNYCHELVSLNLQSCSRITDEGVVQICRGCHRLQALCLSGCSNLT 247
Query: 369 YASINSITKTCTSLTSLRMECCKLVSWEAFVLIGQQCQYLEELDITENE-VNDEGLKSIS 427
AS+ ++ C L L C ++ F L+ + C LE++D+ E + D L +S
Sbjct: 248 DASLTALALNCPRLQILEAARCSHLTDAGFTLLARNCHDLEKMDLEECILITDSTLIQLS 307
Query: 428 -RCSKLSSLKLGICSNITDEGLKHVG-STCS--MLKELDL 463
C KL +L L C ITD+G+ H+ STC L+ L+L
Sbjct: 308 VHCPKLQALSLSHCELITDDGILHLSNSTCGHERLRVLEL 347
|
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| UNIPROTKB|Q9UKC9 FBXL2 "F-box/LRR-repeat protein 2" [Homo sapiens (taxid:9606)] | Back alignment and assigned GO terms |
|---|
Score = 263 (97.6 bits), Expect = 1.8e-20, P = 1.8e-20
Identities = 78/280 (27%), Positives = 136/280 (48%)
Query: 194 VELVALKCQE-IRTLDL-SYLPITEKCLPPVVK-LQYLEDLVLEGCHGIDDDGLASVEYS 250
VE ++ +C +R L L + + + L + + +E L L GC I D S+
Sbjct: 69 VENISKRCGGFLRKLSLRGCIGVGDSSLKTFAQNCRNIEHLNLNGCTKITDSTCYSLSRF 128
Query: 251 CKSLKALNLSKCQNISHVGLSSLIKGADYLQQLILAYSFWVSAD-LSKCLHNFPMLQSIK 309
C LK L+L+ C +I++ L + +G L+ L L++ ++ D + + L+++
Sbjct: 129 CSKLKHLDLTSCVSITNSSLKGISEGCRNLEYLNLSWCDQITKDGIEALVRGCRGLKALL 188
Query: 310 FEDCP-VARSGIKAIGNWHGSLKELSLSKCSGVTDEELSFVVQSHKELRKLDITCCRKIT 368
C + +K I N+ L L+L CS +TDE + + + L+ L ++ C +T
Sbjct: 189 LRGCTQLEDEALKHIQNYCHELVSLNLQSCSRITDEGVVQICRGCHRLQALCLSGCSNLT 248
Query: 369 YASINSITKTCTSLTSLRMECCKLVSWEAFVLIGQQCQYLEELDITENE-VNDEGLKSIS 427
AS+ ++ C L L C ++ F L+ + C LE++D+ E + D L +S
Sbjct: 249 DASLTALGLNCPRLQILEAARCSHLTDAGFTLLARNCHELEKMDLEECILITDSTLIQLS 308
Query: 428 -RCSKLSSLKLGICSNITDEGLKHVG-STCS--MLKELDL 463
C KL +L L C ITD+G+ H+ STC L+ L+L
Sbjct: 309 IHCPKLQALSLSHCELITDDGILHLSNSTCGHERLRVLEL 348
|
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| UNIPROTKB|Q5R3Z8 FBXL2 "F-box/LRR-repeat protein 2" [Pongo abelii (taxid:9601)] | Back alignment and assigned GO terms |
|---|
Score = 263 (97.6 bits), Expect = 1.8e-20, P = 1.8e-20
Identities = 78/280 (27%), Positives = 136/280 (48%)
Query: 194 VELVALKCQE-IRTLDL-SYLPITEKCLPPVVK-LQYLEDLVLEGCHGIDDDGLASVEYS 250
VE ++ +C +R L L + + + L + + +E L L GC I D S+
Sbjct: 69 VENISKRCGGFLRKLSLRGCIGVGDSSLKTFAQNCRNIEHLNLNGCTKITDSTCYSLSRF 128
Query: 251 CKSLKALNLSKCQNISHVGLSSLIKGADYLQQLILAYSFWVSAD-LSKCLHNFPMLQSIK 309
C LK L+L+ C +I++ L + +G L+ L L++ ++ D + + L+++
Sbjct: 129 CSKLKHLDLTSCVSITNSSLKGISEGCRNLEYLNLSWCDQITKDGIEALVRGCRGLKALL 188
Query: 310 FEDCP-VARSGIKAIGNWHGSLKELSLSKCSGVTDEELSFVVQSHKELRKLDITCCRKIT 368
C + +K I N+ L L+L CS +TDE + + + L+ L ++ C +T
Sbjct: 189 LRGCTQLEDEALKHIQNYCHELVSLNLQSCSRITDEGVVQICRGCHRLQALCLSGCSNLT 248
Query: 369 YASINSITKTCTSLTSLRMECCKLVSWEAFVLIGQQCQYLEELDITENE-VNDEGLKSIS 427
AS+ ++ C L L C ++ F L+ + C LE++D+ E + D L +S
Sbjct: 249 DASLTALGLNCPRLQILEAARCSHLTDAGFTLLARNCHELEKMDLEECILITDSTLIQLS 308
Query: 428 -RCSKLSSLKLGICSNITDEGLKHVG-STCS--MLKELDL 463
C KL +L L C ITD+G+ H+ STC L+ L+L
Sbjct: 309 IHCPKLQALSLSHCELITDDGILHLSNSTCGHERLRVLEL 348
|
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| TAIR|locus:2145512 EBF2 "EIN3-binding F box protein 2" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 268 (99.4 bits), Expect = 1.9e-20, P = 1.9e-20
Identities = 82/314 (26%), Positives = 141/314 (44%)
Query: 163 ITDLGIGRIAAXXXXXXXXXXXXXIRVTDLGVELVALKCQEIRTLDLSYLP-ITEKCLPP 221
+TD+G+G +A V+DLG+ +A C I LDLS P IT+ L
Sbjct: 154 VTDVGLGAVAHGCPSLRIVSLWNLPAVSDLGLSEIARSCPMIEKLDLSRCPGITDSGLVA 213
Query: 222 VVK-LQYLEDLVLEGCHGIDDDGLASVEYSCKSLKALNLSKCQNISHVGLSSLIKGA-DY 279
+ + L DL ++ C G+ ++GL ++ C +L+++++ C I G++ L+ A Y
Sbjct: 214 IAENCVNLSDLTIDSCSGVGNEGLRAIARRCVNLRSISIRSCPRIGDQGVAFLLAQAGSY 273
Query: 280 LQQLILAYSFWVSADLSKCLHNFPMLQSIKFEDCP-VARSGIKAIGNWHG--SLKELSLS 336
L ++ L L+ H + + V G +GN G LK LS+
Sbjct: 274 LTKVKLQMLNVSGLSLAVIGHYGAAVTDLVLHGLQGVNEKGFWVMGNAKGLKKLKSLSVM 333
Query: 337 KCSGVTDEELSFVVQSHKELRKLDITCCRKITYASINSITKTCTSLTSLRMECCKLVSWE 396
C G+TD L V +L+ + + C ++ + ++ K+ SL SL++E C ++
Sbjct: 334 SCRGMTDVGLEAVGNGCPDLKHVSLNKCLLVSGKGLVALAKSALSLESLKLEECHRIN-- 391
Query: 397 AFVLIG--QQC-QYLEELDITE----NEVNDEGLKSISRCSKLSSLKLGICSNITDEGLK 449
F L+G C L+ + ++ N E CS L SL + C D L
Sbjct: 392 QFGLMGFLMNCGSKLKAFSLANCLGISDFNSESSLPSPSCSSLRSLSIRCCPGFGDASLA 451
Query: 450 HVGSTCSMLKELDL 463
+G C L++++L
Sbjct: 452 FLGKFCHQLQDVEL 465
|
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| UNIPROTKB|Q58DG6 FBXL20 "F-box/LRR-repeat protein 20" [Bos taurus (taxid:9913)] | Back alignment and assigned GO terms |
|---|
Score = 262 (97.3 bits), Expect = 2.7e-20, P = 2.7e-20
Identities = 70/241 (29%), Positives = 116/241 (48%)
Query: 227 YLEDLVLEGCHGIDDDGLASVEYSCKSLKALNLSKCQNISHVGLSSLIKGADYLQQLILA 286
+L L L GC G+ D+ L + +C++++ LNL+ C + +SL K L+ L LA
Sbjct: 92 FLRKLSLRGCLGVGDNALRTFAQNCRNIEVLNLNGCTKTTDATCTSLSKFCSKLRHLDLA 151
Query: 287 YSFWVSADLSKCL-HNFPMLQSIKFEDCP-VARSGIKAIGNWHGSLKELSLSKCSGVTDE 344
++ K L P+L+ + C V + GI+A+ G LK L L C+ + DE
Sbjct: 152 SCTSITNMSLKALSEGCPLLEQLNISWCDQVTKDGIQALVRGCGGLKALFLKGCTQLEDE 211
Query: 345 ELSFVVQSHKELRKLDITCCRKITYASINSITKTCTSLTSLRMECCKLVSWEAFVLIGQQ 404
L ++ EL L++ C +IT + +I + C L SL C ++ +GQ
Sbjct: 212 ALKYIGAHCPELVTLNLQTCLQITDEGLITICRGCHKLQSLCASGCSNITDAILNALGQN 271
Query: 405 CQYLEELDITE-NEVNDEGLKSISR-CSKLSSLKLGICSNITDEGLKHVGSTCSMLKELD 462
C L L++ +++ D G +++R C +L + L C ITD L + C L+ L
Sbjct: 272 CPRLRILEVARCSQLTDVGFTTLARNCHELEKMDLEECVQITDSTLIQLSIHCPRLQVLS 331
Query: 463 L 463
L
Sbjct: 332 L 332
|
|
| UNIPROTKB|Q96IG2 FBXL20 "F-box/LRR-repeat protein 20" [Homo sapiens (taxid:9606)] | Back alignment and assigned GO terms |
|---|
Score = 262 (97.3 bits), Expect = 2.7e-20, P = 2.7e-20
Identities = 70/241 (29%), Positives = 116/241 (48%)
Query: 227 YLEDLVLEGCHGIDDDGLASVEYSCKSLKALNLSKCQNISHVGLSSLIKGADYLQQLILA 286
+L L L GC G+ D+ L + +C++++ LNL+ C + +SL K L+ L LA
Sbjct: 92 FLRKLSLRGCLGVGDNALRTFAQNCRNIEVLNLNGCTKTTDATCTSLSKFCSKLRHLDLA 151
Query: 287 YSFWVSADLSKCL-HNFPMLQSIKFEDCP-VARSGIKAIGNWHGSLKELSLSKCSGVTDE 344
++ K L P+L+ + C V + GI+A+ G LK L L C+ + DE
Sbjct: 152 SCTSITNMSLKALSEGCPLLEQLNISWCDQVTKDGIQALVRGCGGLKALFLKGCTQLEDE 211
Query: 345 ELSFVVQSHKELRKLDITCCRKITYASINSITKTCTSLTSLRMECCKLVSWEAFVLIGQQ 404
L ++ EL L++ C +IT + +I + C L SL C ++ +GQ
Sbjct: 212 ALKYIGAHCPELVTLNLQTCLQITDEGLITICRGCHKLQSLCASGCSNITDAILNALGQN 271
Query: 405 CQYLEELDITE-NEVNDEGLKSISR-CSKLSSLKLGICSNITDEGLKHVGSTCSMLKELD 462
C L L++ +++ D G +++R C +L + L C ITD L + C L+ L
Sbjct: 272 CPRLRILEVARCSQLTDVGFTTLARNCHELEKMDLEECVQITDSTLIQLSIHCPRLQVLS 331
Query: 463 L 463
L
Sbjct: 332 L 332
|
|
Prediction of Enzyme Commission (EC) Number
EC Number Prediction by Annotation Transfer from SWISS-PROT Entries
Original result of BLAST against SWISS-PROT
| ID | Name | Annotated EC number | Identity | Query coverage | Hit coverage | RBH(Q2H) | RBH(H2Q) |
| Q8RWU5 | FBL3_ARATH | No assigned EC number | 0.5741 | 0.9893 | 0.6962 | yes | no |
EC Number Prediction by Ezypred Server
Original result from Ezypred Server
Fail to connect to Ezypred Server
EC Number Prediction by EFICAz Software
No EC number assignment, probably not an enzyme!
Prediction of Functionally Associated Proteins
Functionally Associated Proteins Detected by STRING
Original result from the STRING server
| Your Input: |  |
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 | fgenesh4_pg.C_LG_XIX001002 | hypothetical protein (649 aa) | |||||||||
(Populus trichocarpa) | |||||||||||
Predicted Functional Partners: | |||||||||||
| Sorry, there are no predicted associations at the current settings. | |||||||||||
Conserved Domains and Related Protein Families
Conserved Domains Detected by RPS-BLAST
Original result of RPS-BLAST against CDD database part I
| ID | Alignment Graph | Length |
Definition |
E-value |
| Query | 468 | |||
| cd09293 | 226 | cd09293, AMN1, Antagonist of mitotic exit network | 1e-13 | |
| cd09293 | 226 | cd09293, AMN1, Antagonist of mitotic exit network | 9e-13 | |
| cd09293 | 226 | cd09293, AMN1, Antagonist of mitotic exit network | 3e-10 | |
| cd09293 | 226 | cd09293, AMN1, Antagonist of mitotic exit network | 9e-10 | |
| cd09293 | 226 | cd09293, AMN1, Antagonist of mitotic exit network | 5e-09 |
| >gnl|CDD|187754 cd09293, AMN1, Antagonist of mitotic exit network protein 1 | Back alignment and domain information |
|---|
Score = 69.7 bits (171), Expect = 1e-13
Identities = 51/181 (28%), Positives = 86/181 (47%), Gaps = 7/181 (3%)
Query: 195 ELVALKCQEIRTLDLSYLPITEKCLPPVVKLQYLEDLVLEGCHGIDDDGLASVEYSCKSL 254
+L+ + + L+L PI++ L + L+ L+L G IDD+GL ++ SC +L
Sbjct: 21 QLLRILHSGLEWLELYMCPISDPPLDQLSNCNKLKKLILPGSKLIDDEGLIALAQSCPNL 80
Query: 255 KALNLSKCQNISHVGLSSLIKGADYLQQLILAY----SFWVSADLSKCLHNFPMLQSIKF 310
+ L+L C+NI+ G+ +L LQ + L LS N LQ++ F
Sbjct: 81 QVLDLRACENITDSGIVALATNCPKLQTINLGRHRNGHLITDVSLSALGKNCTFLQTVGF 140
Query: 311 EDCPVARSGIKAIGNWHG-SLKELSLSKCSGVTDEELSFVVQSH--KELRKLDITCCRKI 367
C V G+ + + SL+ LSL+ C +TD+ + ++ S+ L L+ C I
Sbjct: 141 AGCDVTDKGVWELASGCSKSLERLSLNNCRNLTDQSIPAILASNYFPNLSVLEFRGCPLI 200
Query: 368 T 368
T
Sbjct: 201 T 201
|
Amn1 has been functionally characterized in Saccharomyces cerevisiae as a component of the Antagonist of MEN pathway (AMEN). The AMEN network is activated by MEN (mitotic exit network) via an active Cdc14, and in turn switches off MEN. Amn1 constitutes one of the alternative mechanisms by which MEN may be disrupted. Specifically, Amn1 binds Tem1 (Termination of M-phase, a GTPase that belongs to the RAS superfamily), and disrupts its association with Cdc15, the primary downstream target. Amn1 is a leucine-rich repeat (LRR) protein, with 12 repeats in the S. cerevisiae ortholog. As a negative regulator of the signal transduction pathway MEN, overexpression of AMN1 slows the growth of wild type cells. The function of the vertebrate members of this family has not been determined experimentally, they have fewer LRRs that determine the extent of this model. Length = 226 |
| >gnl|CDD|187754 cd09293, AMN1, Antagonist of mitotic exit network protein 1 | Back alignment and domain information |
|---|
Score = 67.4 bits (165), Expect = 9e-13
Identities = 41/156 (26%), Positives = 75/156 (48%), Gaps = 6/156 (3%)
Query: 301 NFPMLQSIKFEDCPVARSGIKAIGNWHGSLKELSLSKCSGVTDEELSFVVQSHKELRKLD 360
L+ ++ CP++ + + N + LK+L L + DE L + QS L+ LD
Sbjct: 26 LHSGLEWLELYMCPISDPPLDQLSNCN-KLKKLILPGSKLIDDEGLIALAQSCPNLQVLD 84
Query: 361 ITCCRKITYASINSITKTCTSLTSL---RMECCKLVSWEAFVLIGQQCQYLEELDITENE 417
+ C IT + I ++ C L ++ R L++ + +G+ C +L+ + +
Sbjct: 85 LRACENITDSGIVALATNCPKLQTINLGRHRNGHLITDVSLSALGKNCTFLQTVGFAGCD 144
Query: 418 VNDEGLKSI-SRCSK-LSSLKLGICSNITDEGLKHV 451
V D+G+ + S CSK L L L C N+TD+ + +
Sbjct: 145 VTDKGVWELASGCSKSLERLSLNNCRNLTDQSIPAI 180
|
Amn1 has been functionally characterized in Saccharomyces cerevisiae as a component of the Antagonist of MEN pathway (AMEN). The AMEN network is activated by MEN (mitotic exit network) via an active Cdc14, and in turn switches off MEN. Amn1 constitutes one of the alternative mechanisms by which MEN may be disrupted. Specifically, Amn1 binds Tem1 (Termination of M-phase, a GTPase that belongs to the RAS superfamily), and disrupts its association with Cdc15, the primary downstream target. Amn1 is a leucine-rich repeat (LRR) protein, with 12 repeats in the S. cerevisiae ortholog. As a negative regulator of the signal transduction pathway MEN, overexpression of AMN1 slows the growth of wild type cells. The function of the vertebrate members of this family has not been determined experimentally, they have fewer LRRs that determine the extent of this model. Length = 226 |
| >gnl|CDD|187754 cd09293, AMN1, Antagonist of mitotic exit network protein 1 | Back alignment and domain information |
|---|
Score = 59.6 bits (145), Expect = 3e-10
Identities = 38/131 (29%), Positives = 70/131 (53%), Gaps = 7/131 (5%)
Query: 149 AKNLERLWLARCKLITDLGIGRIAACCRKLKLLCLKWCIRVTDLGVELVALKCQEIRTLD 208
L++L L KLI D G+ +A C L++L L+ C +TD G+ +A C +++T++
Sbjct: 51 CNKLKKLILPGSKLIDDEGLIALAQSCPNLQVLDLRACENITDSGIVALATNCPKLQTIN 110
Query: 209 LSYLP----ITEKCLPPVVKLQ-YLEDLVLEGCHGIDDDGLASVEYSC-KSLKALNLSKC 262
L IT+ L + K +L+ + GC + D G+ + C KSL+ L+L+ C
Sbjct: 111 LGRHRNGHLITDVSLSALGKNCTFLQTVGFAGCD-VTDKGVWELASGCSKSLERLSLNNC 169
Query: 263 QNISHVGLSSL 273
+N++ + ++
Sbjct: 170 RNLTDQSIPAI 180
|
Amn1 has been functionally characterized in Saccharomyces cerevisiae as a component of the Antagonist of MEN pathway (AMEN). The AMEN network is activated by MEN (mitotic exit network) via an active Cdc14, and in turn switches off MEN. Amn1 constitutes one of the alternative mechanisms by which MEN may be disrupted. Specifically, Amn1 binds Tem1 (Termination of M-phase, a GTPase that belongs to the RAS superfamily), and disrupts its association with Cdc15, the primary downstream target. Amn1 is a leucine-rich repeat (LRR) protein, with 12 repeats in the S. cerevisiae ortholog. As a negative regulator of the signal transduction pathway MEN, overexpression of AMN1 slows the growth of wild type cells. The function of the vertebrate members of this family has not been determined experimentally, they have fewer LRRs that determine the extent of this model. Length = 226 |
| >gnl|CDD|187754 cd09293, AMN1, Antagonist of mitotic exit network protein 1 | Back alignment and domain information |
|---|
Score = 58.5 bits (142), Expect = 9e-10
Identities = 34/139 (24%), Positives = 62/139 (44%), Gaps = 8/139 (5%)
Query: 331 KELSLSKCSGVTDEELSFVVQS-HKELRKLDITCCRKITYASINSITKTCTSLTSLRMEC 389
L K +T +S +++ H L L++ C ++ ++ C L L +
Sbjct: 4 LLFILHKLGQITQSNISQLLRILHSGLEWLELYMCPISD-PPLDQLSN-CNKLKKLILPG 61
Query: 390 CKLVSWEAFVLIGQQCQYLEELDITENE-VNDEGLKSISR-CSKLSSLKLGI---CSNIT 444
KL+ E + + Q C L+ LD+ E + D G+ +++ C KL ++ LG IT
Sbjct: 62 SKLIDDEGLIALAQSCPNLQVLDLRACENITDSGIVALATNCPKLQTINLGRHRNGHLIT 121
Query: 445 DEGLKHVGSTCSMLKELDL 463
D L +G C+ L+ +
Sbjct: 122 DVSLSALGKNCTFLQTVGF 140
|
Amn1 has been functionally characterized in Saccharomyces cerevisiae as a component of the Antagonist of MEN pathway (AMEN). The AMEN network is activated by MEN (mitotic exit network) via an active Cdc14, and in turn switches off MEN. Amn1 constitutes one of the alternative mechanisms by which MEN may be disrupted. Specifically, Amn1 binds Tem1 (Termination of M-phase, a GTPase that belongs to the RAS superfamily), and disrupts its association with Cdc15, the primary downstream target. Amn1 is a leucine-rich repeat (LRR) protein, with 12 repeats in the S. cerevisiae ortholog. As a negative regulator of the signal transduction pathway MEN, overexpression of AMN1 slows the growth of wild type cells. The function of the vertebrate members of this family has not been determined experimentally, they have fewer LRRs that determine the extent of this model. Length = 226 |
| >gnl|CDD|187754 cd09293, AMN1, Antagonist of mitotic exit network protein 1 | Back alignment and domain information |
|---|
Score = 56.2 bits (136), Expect = 5e-09
Identities = 48/207 (23%), Positives = 82/207 (39%), Gaps = 38/207 (18%)
Query: 76 LDLSLCPRANDDALSIVSSSSWKLTLRSINLSRSRLFTKVGLSSLTVNCRFLTEIDLSNG 135
L+L +CP + D L +S+ L+ + L S+L GL +L +C L +DL
Sbjct: 33 LELYMCPIS-DPPLDQLSNC---NKLKKLILPGSKLIDDEGLIALAQSCPNLQVLDLR-- 86
Query: 136 TEMGDAAAAAIAEAKNLERLWLARCKLITDLGIGRIAACCRKLKLLCLKW---CIRVTDL 192
C+ ITD GI +A C KL+ + L +TD+
Sbjct: 87 -----------------------ACENITDSGIVALATNCPKLQTINLGRHRNGHLITDV 123
Query: 193 GVELVALKCQEIRTLDLSYLPITEKCLPPVV--KLQYLEDLVLEGCHGIDDDGLASVEYS 250
+ + C ++T+ + +T+K + + + LE L L C + D + ++ S
Sbjct: 124 SLSALGKNCTFLQTVGFAGCDVTDKGVWELASGCSKSLERLSLNNCRNLTDQSIPAILAS 183
Query: 251 --CKSLKALNLSKCQNISHVGLSSLIK 275
+L L C I S +I
Sbjct: 184 NYFPNLSVLEFRGCPLI--TDFSRIIL 208
|
Amn1 has been functionally characterized in Saccharomyces cerevisiae as a component of the Antagonist of MEN pathway (AMEN). The AMEN network is activated by MEN (mitotic exit network) via an active Cdc14, and in turn switches off MEN. Amn1 constitutes one of the alternative mechanisms by which MEN may be disrupted. Specifically, Amn1 binds Tem1 (Termination of M-phase, a GTPase that belongs to the RAS superfamily), and disrupts its association with Cdc15, the primary downstream target. Amn1 is a leucine-rich repeat (LRR) protein, with 12 repeats in the S. cerevisiae ortholog. As a negative regulator of the signal transduction pathway MEN, overexpression of AMN1 slows the growth of wild type cells. The function of the vertebrate members of this family has not been determined experimentally, they have fewer LRRs that determine the extent of this model. Length = 226 |
Conserved Domains Detected by HHsearch
Original result of HHsearch against CDD database
| ID | Alignment Graph | Length |
Definition |
Probability |
| Query | 468 | |||
| KOG4341 | 483 | consensus F-box protein containing LRR [General fu | 100.0 | |
| KOG4341 | 483 | consensus F-box protein containing LRR [General fu | 99.94 | |
| PLN00113 | 968 | leucine-rich repeat receptor-like protein kinase; | 99.94 | |
| KOG2120 | 419 | consensus SCF ubiquitin ligase, Skp2 component [Po | 99.93 | |
| PLN00113 | 968 | leucine-rich repeat receptor-like protein kinase; | 99.92 | |
| KOG4194 | 873 | consensus Membrane glycoprotein LIG-1 [Signal tran | 99.89 | |
| KOG4194 | 873 | consensus Membrane glycoprotein LIG-1 [Signal tran | 99.87 | |
| cd00116 | 319 | LRR_RI Leucine-rich repeats (LRRs), ribonuclease i | 99.81 | |
| cd00116 | 319 | LRR_RI Leucine-rich repeats (LRRs), ribonuclease i | 99.75 | |
| KOG0444 | 1255 | consensus Cytoskeletal regulator Flightless-I (con | 99.74 | |
| PLN03210 | 1153 | Resistant to P. syringae 6; Provisional | 99.74 | |
| KOG2120 | 419 | consensus SCF ubiquitin ligase, Skp2 component [Po | 99.71 | |
| PLN03210 | 1153 | Resistant to P. syringae 6; Provisional | 99.69 | |
| KOG0444 | 1255 | consensus Cytoskeletal regulator Flightless-I (con | 99.65 | |
| KOG1947 | 482 | consensus Leucine rich repeat proteins, some prote | 99.62 | |
| KOG1947 | 482 | consensus Leucine rich repeat proteins, some prote | 99.51 | |
| KOG1909 | 382 | consensus Ran GTPase-activating protein [RNA proce | 99.47 | |
| KOG0618 | 1081 | consensus Serine/threonine phosphatase 2C containi | 99.47 | |
| KOG1909 | 382 | consensus Ran GTPase-activating protein [RNA proce | 99.41 | |
| KOG0472 | 565 | consensus Leucine-rich repeat protein [Function un | 99.38 | |
| KOG3207 | 505 | consensus Beta-tubulin folding cofactor E [Posttra | 99.38 | |
| KOG0618 | 1081 | consensus Serine/threonine phosphatase 2C containi | 99.34 | |
| KOG3207 | 505 | consensus Beta-tubulin folding cofactor E [Posttra | 99.3 | |
| KOG4237 | 498 | consensus Extracellular matrix protein slit, conta | 99.2 | |
| KOG4237 | 498 | consensus Extracellular matrix protein slit, conta | 99.13 | |
| PRK15387 | 788 | E3 ubiquitin-protein ligase SspH2; Provisional | 99.06 | |
| KOG0472 | 565 | consensus Leucine-rich repeat protein [Function un | 99.04 | |
| PF12937 | 47 | F-box-like: F-box-like; PDB: 1P22_A 2OVP_B 2OVR_B | 99.04 | |
| PRK15387 | 788 | E3 ubiquitin-protein ligase SspH2; Provisional | 99.03 | |
| KOG3665 | 699 | consensus ZYG-1-like serine/threonine protein kina | 98.94 | |
| KOG3665 | 699 | consensus ZYG-1-like serine/threonine protein kina | 98.87 | |
| KOG2982 | 418 | consensus Uncharacterized conserved protein [Funct | 98.84 | |
| KOG2982 | 418 | consensus Uncharacterized conserved protein [Funct | 98.82 | |
| COG5238 | 388 | RNA1 Ran GTPase-activating protein (RanGAP) involv | 98.8 | |
| PF14580 | 175 | LRR_9: Leucine-rich repeat; PDB: 2JE1_D 2JE0_A 2JQ | 98.71 | |
| PRK15370 | 754 | E3 ubiquitin-protein ligase SlrP; Provisional | 98.68 | |
| PF00646 | 48 | F-box: F-box domain; InterPro: IPR001810 The F-box | 98.65 | |
| PF14580 | 175 | LRR_9: Leucine-rich repeat; PDB: 2JE1_D 2JE0_A 2JQ | 98.64 | |
| KOG1259 | 490 | consensus Nischarin, modulator of integrin alpha5 | 98.61 | |
| PRK15370 | 754 | E3 ubiquitin-protein ligase SlrP; Provisional | 98.53 | |
| KOG4658 | 889 | consensus Apoptotic ATPase [Signal transduction me | 98.5 | |
| KOG1259 | 490 | consensus Nischarin, modulator of integrin alpha5 | 98.48 | |
| smart00256 | 41 | FBOX A Receptor for Ubiquitination Targets. | 98.47 | |
| COG5238 | 388 | RNA1 Ran GTPase-activating protein (RanGAP) involv | 98.45 | |
| KOG4658 | 889 | consensus Apoptotic ATPase [Signal transduction me | 98.41 | |
| KOG0617 | 264 | consensus Ras suppressor protein (contains leucine | 98.41 | |
| PF13855 | 61 | LRR_8: Leucine rich repeat; PDB: 2O6S_A 3A79_B 3RF | 98.27 | |
| KOG1859 | 1096 | consensus Leucine-rich repeat proteins [General fu | 98.27 | |
| KOG3864 | 221 | consensus Uncharacterized conserved protein [Funct | 98.24 | |
| KOG3864 | 221 | consensus Uncharacterized conserved protein [Funct | 98.11 | |
| PF13855 | 61 | LRR_8: Leucine rich repeat; PDB: 2O6S_A 3A79_B 3RF | 98.03 | |
| KOG0617 | 264 | consensus Ras suppressor protein (contains leucine | 98.0 | |
| KOG1859 | 1096 | consensus Leucine-rich repeat proteins [General fu | 97.91 | |
| PLN03150 | 623 | hypothetical protein; Provisional | 97.64 | |
| PF12799 | 44 | LRR_4: Leucine Rich repeats (2 copies); PDB: 2OMT_ | 97.61 | |
| PLN03150 | 623 | hypothetical protein; Provisional | 97.24 | |
| COG4886 | 394 | Leucine-rich repeat (LRR) protein [Function unknow | 97.23 | |
| COG4886 | 394 | Leucine-rich repeat (LRR) protein [Function unknow | 97.23 | |
| PF12799 | 44 | LRR_4: Leucine Rich repeats (2 copies); PDB: 2OMT_ | 97.14 | |
| KOG2123 | 388 | consensus Uncharacterized conserved protein [Funct | 97.02 | |
| KOG4308 | 478 | consensus LRR-containing protein [Function unknown | 96.96 | |
| PRK15386 | 426 | type III secretion protein GogB; Provisional | 96.86 | |
| KOG4308 | 478 | consensus LRR-containing protein [Function unknown | 96.84 | |
| KOG1644 | 233 | consensus U2-associated snRNP A' protein [RNA proc | 96.83 | |
| KOG2739 | 260 | consensus Leucine-rich acidic nuclear protein [Cel | 96.8 | |
| smart00367 | 26 | LRR_CC Leucine-rich repeat - CC (cysteine-containi | 96.79 | |
| PRK15386 | 426 | type III secretion protein GogB; Provisional | 96.79 | |
| KOG2123 | 388 | consensus Uncharacterized conserved protein [Funct | 96.72 | |
| KOG1644 | 233 | consensus U2-associated snRNP A' protein [RNA proc | 96.71 | |
| smart00367 | 26 | LRR_CC Leucine-rich repeat - CC (cysteine-containi | 96.71 | |
| KOG2739 | 260 | consensus Leucine-rich acidic nuclear protein [Cel | 96.58 | |
| KOG4579 | 177 | consensus Leucine-rich repeat (LRR) protein associ | 96.57 | |
| PLN03215 | 373 | ascorbic acid mannose pathway regulator 1; Provisi | 96.27 | |
| KOG4579 | 177 | consensus Leucine-rich repeat (LRR) protein associ | 96.17 | |
| KOG0531 | 414 | consensus Protein phosphatase 1, regulatory subuni | 95.98 | |
| KOG2997 | 366 | consensus F-box protein FBX9 [General function pre | 95.73 | |
| PF13516 | 24 | LRR_6: Leucine Rich repeat; PDB: 3RGZ_A 3RJ0_A 3RI | 95.51 | |
| KOG0281 | 499 | consensus Beta-TrCP (transducin repeats containing | 95.37 | |
| PF13516 | 24 | LRR_6: Leucine Rich repeat; PDB: 3RGZ_A 3RJ0_A 3RI | 95.1 | |
| KOG0531 | 414 | consensus Protein phosphatase 1, regulatory subuni | 94.91 | |
| KOG0532 | 722 | consensus Leucine-rich repeat (LRR) protein, conta | 93.68 | |
| PF13013 | 109 | F-box-like_2: F-box-like domain | 93.59 | |
| KOG0532 | 722 | consensus Leucine-rich repeat (LRR) protein, conta | 92.5 | |
| smart00368 | 28 | LRR_RI Leucine rich repeat, ribonuclease inhibitor | 92.24 | |
| smart00368 | 28 | LRR_RI Leucine rich repeat, ribonuclease inhibitor | 92.08 | |
| KOG3763 | 585 | consensus mRNA export factor TAP/MEX67 [RNA proces | 91.69 | |
| PF13504 | 17 | LRR_7: Leucine rich repeat; PDB: 3OJA_B 3G06_A 1OO | 90.06 | |
| KOG3763 | 585 | consensus mRNA export factor TAP/MEX67 [RNA proces | 86.69 | |
| KOG0274 | 537 | consensus Cdc4 and related F-box and WD-40 protein | 86.42 | |
| PF00560 | 22 | LRR_1: Leucine Rich Repeat; InterPro: IPR001611 Le | 85.75 | |
| PF13306 | 129 | LRR_5: Leucine rich repeats (6 copies); PDB: 3ZYJ_ | 84.84 | |
| PF09372 | 97 | PRANC: PRANC domain; InterPro: IPR018272 This pres | 82.34 | |
| smart00369 | 26 | LRR_TYP Leucine-rich repeats, typical (most popula | 81.63 | |
| smart00370 | 26 | LRR Leucine-rich repeats, outliers. | 81.63 | |
| PF13306 | 129 | LRR_5: Leucine rich repeats (6 copies); PDB: 3ZYJ_ | 80.46 |
| >KOG4341 consensus F-box protein containing LRR [General function prediction only] | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.6e-36 Score=254.42 Aligned_cols=382 Identities=23% Similarity=0.406 Sum_probs=284.7
Q ss_pred cccCcHHHHHHHHhhhcCChhhhhHHhhhhhhHHHHHHhhhhhccccccchHHHHhccCCCCcEEecCCCCC-CChhHHH
Q 012207 12 FDFLSEEIIFNILDHLNNDPFARKSFSLTCRNFYSIESRHRKILKPLCAETLSRTSARYPFITQLDLSLCPR-ANDDALS 90 (468)
Q Consensus 12 ~~~LP~eil~~I~~~~l~~~~~~~~~~~v~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~l~~~~~-~~~~~~~ 90 (468)
--.||+|++..||+ +|. .+.+.+++.||+.|+..+.+. .+.+++++...+. +....+.
T Consensus 72 ~~~LPpEl~lkvFS-~LD-tksl~r~a~~c~~~n~~AlD~-------------------~~~q~idL~t~~rDv~g~VV~ 130 (483)
T KOG4341|consen 72 SRSLPPELLLKVFS-MLD-TKSLCRAAQCCTMWNKLALDG-------------------SCWQHIDLFTFQRDVDGGVVE 130 (483)
T ss_pred cccCCHHHHHHHHH-HHh-HHHHHHHHHHHHHhhhhhhcc-------------------ccceeeehhcchhcCCCccee
Confidence 34599999999999 995 999999999999999876543 2345555543322 2223333
Q ss_pred hhhcccccCCccEEecCCCCcccHHHHHHhhhcCCCCcEEEccCCCccCHHHHHHHHc-CCCCCeEeccCCcccChHhHH
Q 012207 91 IVSSSSWKLTLRSINLSRSRLFTKVGLSSLTVNCRFLTEIDLSNGTEMGDAAAAAIAE-AKNLERLWLARCKLITDLGIG 169 (468)
Q Consensus 91 ~l~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~l~~-~~~L~~L~l~~~~~~~~~~~~ 169 (468)
.+ .......++.|.++++....+..+..+...||++++|.+.+|..+++.....+++ |++|++|++..|..+++..++
T Consensus 131 ~~-~~Rcgg~lk~LSlrG~r~v~~sslrt~~~~CpnIehL~l~gc~~iTd~s~~sla~~C~~l~~l~L~~c~~iT~~~Lk 209 (483)
T KOG4341|consen 131 NM-ISRCGGFLKELSLRGCRAVGDSSLRTFASNCPNIEHLALYGCKKITDSSLLSLARYCRKLRHLNLHSCSSITDVSLK 209 (483)
T ss_pred hH-hhhhccccccccccccccCCcchhhHHhhhCCchhhhhhhcceeccHHHHHHHHHhcchhhhhhhcccchhHHHHHH
Confidence 33 4556678899999998888888888888889999999888888888877777765 788888888888778887777
Q ss_pred HHHhcCCCCcEEeccCCCCCChHHHHHHHhhCCCccEeeecccCCCCCCccccccCCCCCeeeecCCCCCChHHHHHHHh
Q 012207 170 RIAACCRKLKLLCLKWCIRVTDLGVELVALKCQEIRTLDLSYLPITEKCLPPVVKLQYLEDLVLEGCHGIDDDGLASVEY 249 (468)
Q Consensus 170 ~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~l~~ 249 (468)
.+..+|++|++|++++|+.+...++..+.+++..++.+... ||.......+.....
T Consensus 210 ~la~gC~kL~~lNlSwc~qi~~~gv~~~~rG~~~l~~~~~k------------------------GC~e~~le~l~~~~~ 265 (483)
T KOG4341|consen 210 YLAEGCRKLKYLNLSWCPQISGNGVQALQRGCKELEKLSLK------------------------GCLELELEALLKAAA 265 (483)
T ss_pred HHHHhhhhHHHhhhccCchhhcCcchHHhccchhhhhhhhc------------------------ccccccHHHHHHHhc
Confidence 77777888888888887776666665555555554444443 444555555555555
Q ss_pred cCCCCCEEEccCCcccChhhHHHHHhcCCccceEeecCCCCCchhHHHHhhcCCCCCeeEecCCcCChhHHHHHHHhCCC
Q 012207 250 SCKSLKALNLSKCQNISHVGLSSLIKGADYLQQLILAYSFWVSADLSKCLHNFPMLQSIKFEDCPVARSGIKAIGNWHGS 329 (468)
Q Consensus 250 ~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~l~~~~~~ 329 (468)
+++-+.++++..|..+++.++..+...+..|+.++.+++.. +++..+..+.+++++
T Consensus 266 ~~~~i~~lnl~~c~~lTD~~~~~i~~~c~~lq~l~~s~~t~------------------------~~d~~l~aLg~~~~~ 321 (483)
T KOG4341|consen 266 YCLEILKLNLQHCNQLTDEDLWLIACGCHALQVLCYSSCTD------------------------ITDEVLWALGQHCHN 321 (483)
T ss_pred cChHhhccchhhhccccchHHHHHhhhhhHhhhhcccCCCC------------------------CchHHHHHHhcCCCc
Confidence 56666666666666666665555555555555555544432 445666777777888
Q ss_pred CCeEecccCCCCCHHHHHHHHHhCCCCCeEecCCCCCCCHHHHHHHHhcCCcCCeEEccCCCCCCHHHHHHHHh---cCC
Q 012207 330 LKELSLSKCSGVTDEELSFVVQSHKELRKLDITCCRKITYASINSITKTCTSLTSLRMECCKLVSWEAFVLIGQ---QCQ 406 (468)
Q Consensus 330 L~~L~l~~~~~~~~~~l~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~---~~~ 406 (468)
|+.|.+++|..+++.++..+..+++.|+.+++..|..+.+..+..++.+|+.|+.+.++.|..+++.++..+.. ...
T Consensus 322 L~~l~l~~c~~fsd~~ft~l~rn~~~Le~l~~e~~~~~~d~tL~sls~~C~~lr~lslshce~itD~gi~~l~~~~c~~~ 401 (483)
T KOG4341|consen 322 LQVLELSGCQQFSDRGFTMLGRNCPHLERLDLEECGLITDGTLASLSRNCPRLRVLSLSHCELITDEGIRHLSSSSCSLE 401 (483)
T ss_pred eEEEeccccchhhhhhhhhhhcCChhhhhhcccccceehhhhHhhhccCCchhccCChhhhhhhhhhhhhhhhhcccccc
Confidence 88888888888888888888888888888888888888888788888888999999998888888887776652 456
Q ss_pred CCCEEEccCC-CCChhhHHhcccCCCCCEEeeCCCCccCHHHHHHHHhcCcccCeeec
Q 012207 407 YLEELDITEN-EVNDEGLKSISRCSKLSSLKLGICSNITDEGLKHVGSTCSMLKELDL 463 (468)
Q Consensus 407 ~L~~L~l~~~-~~~~~~~~~l~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~~L~~L~l 463 (468)
.|+.+.+.++ .+++.....+..|++|+.+++.+|..++.+++..+...+|+++....
T Consensus 402 ~l~~lEL~n~p~i~d~~Le~l~~c~~Leri~l~~~q~vtk~~i~~~~~~lp~i~v~a~ 459 (483)
T KOG4341|consen 402 GLEVLELDNCPLITDATLEHLSICRNLERIELIDCQDVTKEAISRFATHLPNIKVHAY 459 (483)
T ss_pred ccceeeecCCCCchHHHHHHHhhCcccceeeeechhhhhhhhhHHHHhhCccceehhh
Confidence 7888888887 67777888888899999999999999998899999989998886543
|
|
| >KOG4341 consensus F-box protein containing LRR [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.94 E-value=1.1e-27 Score=204.29 Aligned_cols=292 Identities=26% Similarity=0.448 Sum_probs=228.5
Q ss_pred CCCeEeccCCcccChHhHHHHHhcCCCCcEEeccCCCCCChHHHHHHHhhCCCccEeeecccCCCCCCccccccCCCCCe
Q 012207 151 NLERLWLARCKLITDLGIGRIAACCRKLKLLCLKWCIRVTDLGVELVALKCQEIRTLDLSYLPITEKCLPPVVKLQYLED 230 (468)
Q Consensus 151 ~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~ 230 (468)
.|++|.+.++..+.+..+..+...||+++.|.+.+|..+++.....+...| ++|++
T Consensus 139 ~lk~LSlrG~r~v~~sslrt~~~~CpnIehL~l~gc~~iTd~s~~sla~~C------------------------~~l~~ 194 (483)
T KOG4341|consen 139 FLKELSLRGCRAVGDSSLRTFASNCPNIEHLALYGCKKITDSSLLSLARYC------------------------RKLRH 194 (483)
T ss_pred ccccccccccccCCcchhhHHhhhCCchhhhhhhcceeccHHHHHHHHHhc------------------------chhhh
Confidence 455555555555555555555555555555555555555554444444444 45555
Q ss_pred eeecCCCCCChHHHHHHHhcCCCCCEEEccCCcccChhhHHHHHhcCCccceEeecCCCCCchhHHHHhh-cCCCCCeeE
Q 012207 231 LVLEGCHGIDDDGLASVEYSCKSLKALNLSKCQNISHVGLSSLIKGADYLQQLILAYSFWVSADLSKCLH-NFPMLQSIK 309 (468)
Q Consensus 231 L~l~~~~~~~~~~~~~l~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~l~-~~~~L~~L~ 309 (468)
+++..|..+++..+..+..+|++|++++++.|+.+...++..+..++..++.+...+|.....+.....+ .++.+..++
T Consensus 195 l~L~~c~~iT~~~Lk~la~gC~kL~~lNlSwc~qi~~~gv~~~~rG~~~l~~~~~kGC~e~~le~l~~~~~~~~~i~~ln 274 (483)
T KOG4341|consen 195 LNLHSCSSITDVSLKYLAEGCRKLKYLNLSWCPQISGNGVQALQRGCKELEKLSLKGCLELELEALLKAAAYCLEILKLN 274 (483)
T ss_pred hhhcccchhHHHHHHHHHHhhhhHHHhhhccCchhhcCcchHHhccchhhhhhhhcccccccHHHHHHHhccChHhhccc
Confidence 5555566677777777777788888888888877777777777777777777777777776666555544 456677777
Q ss_pred ecCCc-CChhHHHHHHHhCCCCCeEecccCCCCCHHHHHHHHHhCCCCCeEecCCCCCCCHHHHHHHHhcCCcCCeEEcc
Q 012207 310 FEDCP-VARSGIKAIGNWHGSLKELSLSKCSGVTDEELSFVVQSHKELRKLDITCCRKITYASINSITKTCTSLTSLRME 388 (468)
Q Consensus 310 l~~~~-~~~~~~~~l~~~~~~L~~L~l~~~~~~~~~~l~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~ 388 (468)
+..|. ++++....+...+..|+.|..++|..+++..+..+..++++|+.|.++.|..+++.++..+..+++.|+.+++.
T Consensus 275 l~~c~~lTD~~~~~i~~~c~~lq~l~~s~~t~~~d~~l~aLg~~~~~L~~l~l~~c~~fsd~~ft~l~rn~~~Le~l~~e 354 (483)
T KOG4341|consen 275 LQHCNQLTDEDLWLIACGCHALQVLCYSSCTDITDEVLWALGQHCHNLQVLELSGCQQFSDRGFTMLGRNCPHLERLDLE 354 (483)
T ss_pred hhhhccccchHHHHHhhhhhHhhhhcccCCCCCchHHHHHHhcCCCceEEEeccccchhhhhhhhhhhcCChhhhhhccc
Confidence 77765 88888888888899999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCCCCHHHHHHHHhcCCCCCEEEccCC-CCChhhHHhccc----CCCCCEEeeCCCCccCHHHHHHHHhcCcccCeeec
Q 012207 389 CCKLVSWEAFVLIGQQCQYLEELDITEN-EVNDEGLKSISR----CSKLSSLKLGICSNITDEGLKHVGSTCSMLKELDL 463 (468)
Q Consensus 389 ~~~~~~~~~~~~~~~~~~~L~~L~l~~~-~~~~~~~~~l~~----~~~L~~L~l~~~~~l~~~~~~~~~~~~~~L~~L~l 463 (468)
+|..+++..+..+..+||.|+++.++.| .++|++...+.. ...|+.+.+++|+.+++..++.+. .|++|+.+++
T Consensus 355 ~~~~~~d~tL~sls~~C~~lr~lslshce~itD~gi~~l~~~~c~~~~l~~lEL~n~p~i~d~~Le~l~-~c~~Leri~l 433 (483)
T KOG4341|consen 355 ECGLITDGTLASLSRNCPRLRVLSLSHCELITDEGIRHLSSSSCSLEGLEVLELDNCPLITDATLEHLS-ICRNLERIEL 433 (483)
T ss_pred ccceehhhhHhhhccCCchhccCChhhhhhhhhhhhhhhhhccccccccceeeecCCCCchHHHHHHHh-hCcccceeee
Confidence 9999999889999999999999999998 789998887763 568999999999999998777766 7999999999
Q ss_pred CCCC
Q 012207 464 YRFS 467 (468)
Q Consensus 464 ~~c~ 467 (468)
.+|+
T Consensus 434 ~~~q 437 (483)
T KOG4341|consen 434 IDCQ 437 (483)
T ss_pred echh
Confidence 9886
|
|
| >PLN00113 leucine-rich repeat receptor-like protein kinase; Provisional | Back alignment and domain information |
|---|
Probab=99.94 E-value=5.3e-26 Score=235.12 Aligned_cols=354 Identities=17% Similarity=0.118 Sum_probs=187.8
Q ss_pred HHHHhccCCCCcEEecCCCCCCChhHHHhhhcccccCCccEEecCCCCcccHHHHHHhhhcCCCCcEEEccCCCccCHHH
Q 012207 63 LSRTSARYPFITQLDLSLCPRANDDALSIVSSSSWKLTLRSINLSRSRLFTKVGLSSLTVNCRFLTEIDLSNGTEMGDAA 142 (468)
Q Consensus 63 ~~~~~~~~~~l~~l~l~~~~~~~~~~~~~l~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~ 142 (468)
++..+..+++|+.|+++++. +.......+ ...+++|++|+++++....... ...+++|++|+++++. +....
T Consensus 85 ~~~~~~~l~~L~~L~Ls~n~-~~~~ip~~~--~~~l~~L~~L~Ls~n~l~~~~p----~~~l~~L~~L~Ls~n~-~~~~~ 156 (968)
T PLN00113 85 ISSAIFRLPYIQTINLSNNQ-LSGPIPDDI--FTTSSSLRYLNLSNNNFTGSIP----RGSIPNLETLDLSNNM-LSGEI 156 (968)
T ss_pred CChHHhCCCCCCEEECCCCc-cCCcCChHH--hccCCCCCEEECcCCccccccC----ccccCCCCEEECcCCc-ccccC
Confidence 34556677888888887663 221111111 2345778888887654211111 0246777888887763 33333
Q ss_pred HHHHHcCCCCCeEeccCCcccChHhHHHHHhcCCCCcEEeccCCCCCChHHHHHHHhhCCCccEeeecccCCCCCCcccc
Q 012207 143 AAAIAEAKNLERLWLARCKLITDLGIGRIAACCRKLKLLCLKWCIRVTDLGVELVALKCQEIRTLDLSYLPITEKCLPPV 222 (468)
Q Consensus 143 ~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l 222 (468)
...+..+++|++|+++++... ......+. .+++|++|++++|..... . ......+++|+.|++++|.+.......+
T Consensus 157 p~~~~~l~~L~~L~L~~n~l~-~~~p~~~~-~l~~L~~L~L~~n~l~~~-~-p~~l~~l~~L~~L~L~~n~l~~~~p~~l 232 (968)
T PLN00113 157 PNDIGSFSSLKVLDLGGNVLV-GKIPNSLT-NLTSLEFLTLASNQLVGQ-I-PRELGQMKSLKWIYLGYNNLSGEIPYEI 232 (968)
T ss_pred ChHHhcCCCCCEEECccCccc-ccCChhhh-hCcCCCeeeccCCCCcCc-C-ChHHcCcCCccEEECcCCccCCcCChhH
Confidence 355777788888888775422 11112222 267788888777642211 1 1222366777777777777666666667
Q ss_pred ccCCCCCeeeecCCCCCChHHHHHHHhcCCCCCEEEccCCcccChhhHHHHHhcCCccceEeecCCCCCchhHHHHhhcC
Q 012207 223 VKLQYLEDLVLEGCHGIDDDGLASVEYSCKSLKALNLSKCQNISHVGLSSLIKGADYLQQLILAYSFWVSADLSKCLHNF 302 (468)
Q Consensus 223 ~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~l~~~ 302 (468)
.++++|++|++++|. +.......+.. +++|+.|+++++..... +...+..+++|+.|+++++ .+....+..+..+
T Consensus 233 ~~l~~L~~L~L~~n~-l~~~~p~~l~~-l~~L~~L~L~~n~l~~~--~p~~l~~l~~L~~L~Ls~n-~l~~~~p~~~~~l 307 (968)
T PLN00113 233 GGLTSLNHLDLVYNN-LTGPIPSSLGN-LKNLQYLFLYQNKLSGP--IPPSIFSLQKLISLDLSDN-SLSGEIPELVIQL 307 (968)
T ss_pred hcCCCCCEEECcCce-eccccChhHhC-CCCCCEEECcCCeeecc--CchhHhhccCcCEEECcCC-eeccCCChhHcCC
Confidence 777777777777743 33222333444 67777777776643211 1222345667777777765 3444555566667
Q ss_pred CCCCeeEecCCcCChhHHHHHHHhCCCCCeEecccCCCCCHHHHHHHHHhCCCCCeEecCCCCCCCHHHHHHHHhcCCcC
Q 012207 303 PMLQSIKFEDCPVARSGIKAIGNWHGSLKELSLSKCSGVTDEELSFVVQSHKELRKLDITCCRKITYASINSITKTCTSL 382 (468)
Q Consensus 303 ~~L~~L~l~~~~~~~~~~~~l~~~~~~L~~L~l~~~~~~~~~~l~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L 382 (468)
++|+.|++.+|.+....+..+. .+++|+.|+++++. +... ++..+..+++|+.|++++|.. ..... .....+++|
T Consensus 308 ~~L~~L~l~~n~~~~~~~~~~~-~l~~L~~L~L~~n~-l~~~-~p~~l~~~~~L~~L~Ls~n~l-~~~~p-~~~~~~~~L 382 (968)
T PLN00113 308 QNLEILHLFSNNFTGKIPVALT-SLPRLQVLQLWSNK-FSGE-IPKNLGKHNNLTVLDLSTNNL-TGEIP-EGLCSSGNL 382 (968)
T ss_pred CCCcEEECCCCccCCcCChhHh-cCCCCCEEECcCCC-CcCc-CChHHhCCCCCcEEECCCCee-EeeCC-hhHhCcCCC
Confidence 7777777777766554444443 56677777776642 3221 333445566677777766542 11111 111133445
Q ss_pred CeEEccCCCCCCHHHHHHHHhcCCCCCEEEccCCCCChhhHHhcccCCCCCEEeeCCC
Q 012207 383 TSLRMECCKLVSWEAFVLIGQQCQYLEELDITENEVNDEGLKSISRCSKLSSLKLGIC 440 (468)
Q Consensus 383 ~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~ 440 (468)
+.|+++++. +.......+. .+++|+.|++++|.++...+..+..+++|+.|++++|
T Consensus 383 ~~L~l~~n~-l~~~~p~~~~-~~~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~Ls~N 438 (968)
T PLN00113 383 FKLILFSNS-LEGEIPKSLG-ACRSLRRVRLQDNSFSGELPSEFTKLPLVYFLDISNN 438 (968)
T ss_pred CEEECcCCE-ecccCCHHHh-CCCCCCEEECcCCEeeeECChhHhcCCCCCEEECcCC
Confidence 555554432 2211111222 4444555555544444433333444444444444444
|
|
| >KOG2120 consensus SCF ubiquitin ligase, Skp2 component [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=99.93 E-value=5.7e-26 Score=185.27 Aligned_cols=269 Identities=24% Similarity=0.348 Sum_probs=135.7
Q ss_pred CcccCcHHHHHHHHhhhcCChhhhhHHhhhhhhHHHHHHhhhhhccccc-------cchHHHHhccCCCCcEEecCCCCC
Q 012207 11 PFDFLSEEIIFNILDHLNNDPFARKSFSLTCRNFYSIESRHRKILKPLC-------AETLSRTSARYPFITQLDLSLCPR 83 (468)
Q Consensus 11 ~~~~LP~eil~~I~~~~l~~~~~~~~~~~v~~~w~~~~~~~~~~~~~~~-------~~~~~~~~~~~~~l~~l~l~~~~~ 83 (468)
.|+.|||||+..||+ .|+ .+++.+++.|||||+++..... .|...+ +..+..+.++ .+..+.+... .
T Consensus 97 ~~~slpDEill~IFs-~L~-kk~LL~~~~VC~Rfyr~~~de~-lW~~lDl~~r~i~p~~l~~l~~r--gV~v~Rlar~-~ 170 (419)
T KOG2120|consen 97 SWDSLPDEILLGIFS-CLC-KKELLKVSGVCKRFYRLASDES-LWQTLDLTGRNIHPDVLGRLLSR--GVIVFRLARS-F 170 (419)
T ss_pred CcccCCHHHHHHHHH-hcc-HHHHHHHHHHHHHHhhcccccc-ceeeeccCCCccChhHHHHHHhC--CeEEEEcchh-h
Confidence 489999999999999 998 9999999999999999865431 222221 1222222221 1222222211 0
Q ss_pred CChhHHHhhhcccccCCccEEecCCCCcccHHHHHHhhhcCCCCcEEEccCCCccCHHHHHHHHcCCCCCeEeccCCccc
Q 012207 84 ANDDALSIVSSSSWKLTLRSINLSRSRLFTKVGLSSLTVNCRFLTEIDLSNGTEMGDAAAAAIAEAKNLERLWLARCKLI 163 (468)
Q Consensus 84 ~~~~~~~~l~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~ 163 (468)
..+..+... ....-..|+++++++. .++...+..+...|.+|+.|.+.+. .++|.....+++-.+|+.|+++.|.++
T Consensus 171 ~~~prlae~-~~~frsRlq~lDLS~s-~it~stl~~iLs~C~kLk~lSlEg~-~LdD~I~~~iAkN~~L~~lnlsm~sG~ 247 (419)
T KOG2120|consen 171 MDQPRLAEH-FSPFRSRLQHLDLSNS-VITVSTLHGILSQCSKLKNLSLEGL-RLDDPIVNTIAKNSNLVRLNLSMCSGF 247 (419)
T ss_pred hcCchhhhh-hhhhhhhhHHhhcchh-heeHHHHHHHHHHHHhhhhcccccc-ccCcHHHHHHhccccceeecccccccc
Confidence 111111111 1222234555555542 2455555555555555555555554 344444444555555555555555444
Q ss_pred ChHhHHHHHhcCCCCcEEeccCCCCCChHHHHHHHhhCCCccEeeecccCCCCCCccccccCCCCCeeeecCCC-CCChH
Q 012207 164 TDLGIGRIAACCRKLKLLCLKWCIRVTDLGVELVALKCQEIRTLDLSYLPITEKCLPPVVKLQYLEDLVLEGCH-GIDDD 242 (468)
Q Consensus 164 ~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~-~~~~~ 242 (468)
+..++..+...|+.|.+|++++|...++.....+..- -++|+.|+++|+. ++...
T Consensus 248 t~n~~~ll~~scs~L~~LNlsWc~l~~~~Vtv~V~hi------------------------se~l~~LNlsG~rrnl~~s 303 (419)
T KOG2120|consen 248 TENALQLLLSSCSRLDELNLSWCFLFTEKVTVAVAHI------------------------SETLTQLNLSGYRRNLQKS 303 (419)
T ss_pred chhHHHHHHHhhhhHhhcCchHhhccchhhhHHHhhh------------------------chhhhhhhhhhhHhhhhhh
Confidence 4444444444444444444444433333211111112 2444444444432 12222
Q ss_pred HHHHHHhcCCCCCEEEccCCcccChhhHHHHHhcCCccceEeecCCCCCchhHHHHhhcCCCCCeeEecCC
Q 012207 243 GLASVEYSCKSLKALNLSKCQNISHVGLSSLIKGADYLQQLILAYSFWVSADLSKCLHNFPMLQSIKFEDC 313 (468)
Q Consensus 243 ~~~~l~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~L~~L~l~~~ 313 (468)
.+..+...||+|.+|+++++..+.+ +....+-+++.|++|.++.|..+..+..-.+...|+|.+|++.|+
T Consensus 304 h~~tL~~rcp~l~~LDLSD~v~l~~-~~~~~~~kf~~L~~lSlsRCY~i~p~~~~~l~s~psl~yLdv~g~ 373 (419)
T KOG2120|consen 304 HLSTLVRRCPNLVHLDLSDSVMLKN-DCFQEFFKFNYLQHLSLSRCYDIIPETLLELNSKPSLVYLDVFGC 373 (419)
T ss_pred HHHHHHHhCCceeeeccccccccCc-hHHHHHHhcchheeeehhhhcCCChHHeeeeccCcceEEEEeccc
Confidence 3444445566666666666655554 233334445566666666665555555545555555555555553
|
|
| >PLN00113 leucine-rich repeat receptor-like protein kinase; Provisional | Back alignment and domain information |
|---|
Probab=99.92 E-value=5.6e-25 Score=227.50 Aligned_cols=381 Identities=17% Similarity=0.127 Sum_probs=174.5
Q ss_pred HHHHhccCCCCcEEecCCCCCCChhHHHhhhcccccCCccEEecCCCCcccHHHHHHhhhcCCCCcEEEccCCCccCHHH
Q 012207 63 LSRTSARYPFITQLDLSLCPRANDDALSIVSSSSWKLTLRSINLSRSRLFTKVGLSSLTVNCRFLTEIDLSNGTEMGDAA 142 (468)
Q Consensus 63 ~~~~~~~~~~l~~l~l~~~~~~~~~~~~~l~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~ 142 (468)
++..+..+++|+.|+++++... ..... ....+++|++|+++++.. .......+ ..+++|+.|+++++. +....
T Consensus 156 ~p~~~~~l~~L~~L~L~~n~l~-~~~p~---~~~~l~~L~~L~L~~n~l-~~~~p~~l-~~l~~L~~L~L~~n~-l~~~~ 228 (968)
T PLN00113 156 IPNDIGSFSSLKVLDLGGNVLV-GKIPN---SLTNLTSLEFLTLASNQL-VGQIPREL-GQMKSLKWIYLGYNN-LSGEI 228 (968)
T ss_pred CChHHhcCCCCCEEECccCccc-ccCCh---hhhhCcCCCeeeccCCCC-cCcCChHH-cCcCCccEEECcCCc-cCCcC
Confidence 4555677788888888776421 11111 123456777777766532 21111222 256666666666653 33222
Q ss_pred HHHHHcCCCCCeEeccCCcccChHhHHHHHhcCCCCcEEeccCCCCCChHHHHHHHhhCCCccEeeecccCCCCCCcccc
Q 012207 143 AAAIAEAKNLERLWLARCKLITDLGIGRIAACCRKLKLLCLKWCIRVTDLGVELVALKCQEIRTLDLSYLPITEKCLPPV 222 (468)
Q Consensus 143 ~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l 222 (468)
...+..+++|++|++.++.. .......+ ..+++|+.|+++++.. .... ......+++|++|++++|.+.......+
T Consensus 229 p~~l~~l~~L~~L~L~~n~l-~~~~p~~l-~~l~~L~~L~L~~n~l-~~~~-p~~l~~l~~L~~L~Ls~n~l~~~~p~~~ 304 (968)
T PLN00113 229 PYEIGGLTSLNHLDLVYNNL-TGPIPSSL-GNLKNLQYLFLYQNKL-SGPI-PPSIFSLQKLISLDLSDNSLSGEIPELV 304 (968)
T ss_pred ChhHhcCCCCCEEECcCcee-ccccChhH-hCCCCCCEEECcCCee-eccC-chhHhhccCcCEEECcCCeeccCCChhH
Confidence 34556666666666665432 11111111 2255666666655421 1111 1111244555555555554444444444
Q ss_pred ccCCCCCeeeecCCCCCChHHHHHHHhcCCCCCEEEccCCcccChhhHHHHHhcCCccceEeecCCC-------------
Q 012207 223 VKLQYLEDLVLEGCHGIDDDGLASVEYSCKSLKALNLSKCQNISHVGLSSLIKGADYLQQLILAYSF------------- 289 (468)
Q Consensus 223 ~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~------------- 289 (468)
.++++|+.|+++++. +.......+.. +++|+.|++.++..... +...+..+++|+.|+++++.
T Consensus 305 ~~l~~L~~L~l~~n~-~~~~~~~~~~~-l~~L~~L~L~~n~l~~~--~p~~l~~~~~L~~L~Ls~n~l~~~~p~~~~~~~ 380 (968)
T PLN00113 305 IQLQNLEILHLFSNN-FTGKIPVALTS-LPRLQVLQLWSNKFSGE--IPKNLGKHNNLTVLDLSTNNLTGEIPEGLCSSG 380 (968)
T ss_pred cCCCCCcEEECCCCc-cCCcCChhHhc-CCCCCEEECcCCCCcCc--CChHHhCCCCCcEEECCCCeeEeeCChhHhCcC
Confidence 445555555554422 22111122222 44444444444432111 11122233334444433321
Q ss_pred ----------CCchhHHHHhhcCCCCCeeEecCCcCChhHHHHHHHhCCCCCeEecccCCCCCHHHHHHHHHhCC-----
Q 012207 290 ----------WVSADLSKCLHNFPMLQSIKFEDCPVARSGIKAIGNWHGSLKELSLSKCSGVTDEELSFVVQSHK----- 354 (468)
Q Consensus 290 ----------~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~l~~~~~~L~~L~l~~~~~~~~~~l~~~~~~~~----- 354 (468)
.+....+..+..+++|+.|++.+|.++...+..+. .+++|+.|+++++ .++.. +......++
T Consensus 381 ~L~~L~l~~n~l~~~~p~~~~~~~~L~~L~L~~n~l~~~~p~~~~-~l~~L~~L~Ls~N-~l~~~-~~~~~~~l~~L~~L 457 (968)
T PLN00113 381 NLFKLILFSNSLEGEIPKSLGACRSLRRVRLQDNSFSGELPSEFT-KLPLVYFLDISNN-NLQGR-INSRKWDMPSLQML 457 (968)
T ss_pred CCCEEECcCCEecccCCHHHhCCCCCCEEECcCCEeeeECChhHh-cCCCCCEEECcCC-cccCc-cChhhccCCCCcEE
Confidence 12222333444455555555555544433222222 3444444444442 12111 111122233
Q ss_pred ------------------CCCeEecCCCCCCCHHHHHHHHhcCCcCCeEEccCCCCCCHHHHHHHHhcCCCCCEEEccCC
Q 012207 355 ------------------ELRKLDITCCRKITYASINSITKTCTSLTSLRMECCKLVSWEAFVLIGQQCQYLEELDITEN 416 (468)
Q Consensus 355 ------------------~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~ 416 (468)
+|+.|++++|. +.... ......+++|+.|++++|. +.......+. .+++|++|++++|
T Consensus 458 ~L~~n~~~~~~p~~~~~~~L~~L~ls~n~-l~~~~-~~~~~~l~~L~~L~Ls~N~-l~~~~p~~~~-~l~~L~~L~Ls~N 533 (968)
T PLN00113 458 SLARNKFFGGLPDSFGSKRLENLDLSRNQ-FSGAV-PRKLGSLSELMQLKLSENK-LSGEIPDELS-SCKKLVSLDLSHN 533 (968)
T ss_pred ECcCceeeeecCcccccccceEEECcCCc-cCCcc-ChhhhhhhccCEEECcCCc-ceeeCChHHc-CccCCCEEECCCC
Confidence 44444444443 21111 1112245566666666543 2222222232 5667777777777
Q ss_pred CCChhhHHhcccCCCCCEEeeCCCCccCHHHHHHHHhcCcccCeeecCCCC
Q 012207 417 EVNDEGLKSISRCSKLSSLKLGICSNITDEGLKHVGSTCSMLKELDLYRFS 467 (468)
Q Consensus 417 ~~~~~~~~~l~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~~L~~L~l~~c~ 467 (468)
.++...+..+..+++|+.|++++| +++.. ++.....+++|+.|++++|+
T Consensus 534 ~l~~~~p~~~~~l~~L~~L~Ls~N-~l~~~-~p~~l~~l~~L~~l~ls~N~ 582 (968)
T PLN00113 534 QLSGQIPASFSEMPVLSQLDLSQN-QLSGE-IPKNLGNVESLVQVNISHNH 582 (968)
T ss_pred cccccCChhHhCcccCCEEECCCC-ccccc-CChhHhcCcccCEEeccCCc
Confidence 776666566666777777777777 55532 33333467777777777775
|
|
| >KOG4194 consensus Membrane glycoprotein LIG-1 [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=99.89 E-value=2.6e-24 Score=191.25 Aligned_cols=154 Identities=19% Similarity=0.210 Sum_probs=66.9
Q ss_pred cCCccEEecCCCCcccHHHHHHhhhcCCCCcEEEccCCCccCHHHHHHHHc-CCCCCeEeccCCcccChHhHHHHHhcCC
Q 012207 98 KLTLRSINLSRSRLFTKVGLSSLTVNCRFLTEIDLSNGTEMGDAAAAAIAE-AKNLERLWLARCKLITDLGIGRIAACCR 176 (468)
Q Consensus 98 ~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~l~~-~~~L~~L~l~~~~~~~~~~~~~~~~~~~ 176 (468)
.+..+.|+++++. +....+..+ ..+|+|+++.+..+ .++.. +.++. ..+|+.|++..+. ++...-+.+.. .+
T Consensus 77 p~~t~~LdlsnNk-l~~id~~~f-~nl~nLq~v~l~~N-~Lt~I--P~f~~~sghl~~L~L~~N~-I~sv~se~L~~-l~ 149 (873)
T KOG4194|consen 77 PSQTQTLDLSNNK-LSHIDFEFF-YNLPNLQEVNLNKN-ELTRI--PRFGHESGHLEKLDLRHNL-ISSVTSEELSA-LP 149 (873)
T ss_pred ccceeeeeccccc-cccCcHHHH-hcCCcceeeeeccc-hhhhc--ccccccccceeEEeeeccc-cccccHHHHHh-Hh
Confidence 3444555555542 222222222 25555555555544 22221 12222 3345555555532 22222222222 45
Q ss_pred CCcEEeccCCCCCChHHHHHHHhhCCCccEeeecccCCCCCCccccccCCCCCeeeecCCCCCChHHHHHHHhcCCCCCE
Q 012207 177 KLKLLCLKWCIRVTDLGVELVALKCQEIRTLDLSYLPITEKCLPPVVKLQYLEDLVLEGCHGIDDDGLASVEYSCKSLKA 256 (468)
Q Consensus 177 ~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~~L~~ 256 (468)
.|++|+++.+ .++......+ ..-+++++|++++|.++.-....+.++.+|..|.++. +.++......+.. +++|+.
T Consensus 150 alrslDLSrN-~is~i~~~sf-p~~~ni~~L~La~N~It~l~~~~F~~lnsL~tlkLsr-NrittLp~r~Fk~-L~~L~~ 225 (873)
T KOG4194|consen 150 ALRSLDLSRN-LISEIPKPSF-PAKVNIKKLNLASNRITTLETGHFDSLNSLLTLKLSR-NRITTLPQRSFKR-LPKLES 225 (873)
T ss_pred hhhhhhhhhc-hhhcccCCCC-CCCCCceEEeeccccccccccccccccchheeeeccc-CcccccCHHHhhh-cchhhh
Confidence 5555555543 2222211111 1224555555555555555555555555555555555 3444444333333 555555
Q ss_pred EEccCC
Q 012207 257 LNLSKC 262 (468)
Q Consensus 257 L~l~~~ 262 (468)
|++..+
T Consensus 226 LdLnrN 231 (873)
T KOG4194|consen 226 LDLNRN 231 (873)
T ss_pred hhcccc
Confidence 555544
|
|
| >KOG4194 consensus Membrane glycoprotein LIG-1 [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=99.87 E-value=2.9e-24 Score=190.99 Aligned_cols=364 Identities=21% Similarity=0.206 Sum_probs=254.1
Q ss_pred CCCcEEecCCCCCCChhHHHhhhcccccCCccEEecCCCCcccHHHHHHhhhcCCCCcEEEccCCCccCHHHHHHHHcCC
Q 012207 71 PFITQLDLSLCPRANDDALSIVSSSSWKLTLRSINLSRSRLFTKVGLSSLTVNCRFLTEIDLSNGTEMGDAAAAAIAEAK 150 (468)
Q Consensus 71 ~~l~~l~l~~~~~~~~~~~~~l~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~l~~~~ 150 (468)
+..+.|+++++. +.+..+.. +...++|+.+++.++. -..++.+.....+|+.|+|.++ .+.....+.++.++
T Consensus 78 ~~t~~LdlsnNk-l~~id~~~---f~nl~nLq~v~l~~N~---Lt~IP~f~~~sghl~~L~L~~N-~I~sv~se~L~~l~ 149 (873)
T KOG4194|consen 78 SQTQTLDLSNNK-LSHIDFEF---FYNLPNLQEVNLNKNE---LTRIPRFGHESGHLEKLDLRHN-LISSVTSEELSALP 149 (873)
T ss_pred cceeeeeccccc-cccCcHHH---HhcCCcceeeeeccch---hhhcccccccccceeEEeeecc-ccccccHHHHHhHh
Confidence 346678888763 44433332 3567999999997653 2345666656788999999988 56666678889999
Q ss_pred CCCeEeccCCcccChHhHHHHHhcCCCCcEEeccCCCCCChHHHHHHHhhCCCccEeeecccCCCCCCccccccCCCCCe
Q 012207 151 NLERLWLARCKLITDLGIGRIAACCRKLKLLCLKWCIRVTDLGVELVALKCQEIRTLDLSYLPITEKCLPPVVKLQYLED 230 (468)
Q Consensus 151 ~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~ 230 (468)
.|+.|+++.+. ++......+.+ -.++++|++.++ .++......+. .+.+|..|.++.|.++.-....+.++++|+.
T Consensus 150 alrslDLSrN~-is~i~~~sfp~-~~ni~~L~La~N-~It~l~~~~F~-~lnsL~tlkLsrNrittLp~r~Fk~L~~L~~ 225 (873)
T KOG4194|consen 150 ALRSLDLSRNL-ISEIPKPSFPA-KVNIKKLNLASN-RITTLETGHFD-SLNSLLTLKLSRNRITTLPQRSFKRLPKLES 225 (873)
T ss_pred hhhhhhhhhch-hhcccCCCCCC-CCCceEEeeccc-ccccccccccc-ccchheeeecccCcccccCHHHhhhcchhhh
Confidence 99999999853 44433333322 468999999986 56665544443 5568999999999998777778888999999
Q ss_pred eeecCCCCCChHHHHHHHhcCCCCCEEEccCCcc--cChhhHHHHHhcCCccceEeecCCCCCchhHHHHhhcCCCCCee
Q 012207 231 LVLEGCHGIDDDGLASVEYSCKSLKALNLSKCQN--ISHVGLSSLIKGADYLQQLILAYSFWVSADLSKCLHNFPMLQSI 308 (468)
Q Consensus 231 L~l~~~~~~~~~~~~~l~~~~~~L~~L~l~~~~~--~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~L~~L 308 (468)
|++.. +.+.......+.. +++|+.|.+..+.. +.|. .+-.+.++++|+++.+ .+......++-++++|+.|
T Consensus 226 LdLnr-N~irive~ltFqg-L~Sl~nlklqrN~I~kL~DG----~Fy~l~kme~l~L~~N-~l~~vn~g~lfgLt~L~~L 298 (873)
T KOG4194|consen 226 LDLNR-NRIRIVEGLTFQG-LPSLQNLKLQRNDISKLDDG----AFYGLEKMEHLNLETN-RLQAVNEGWLFGLTSLEQL 298 (873)
T ss_pred hhccc-cceeeehhhhhcC-chhhhhhhhhhcCcccccCc----ceeeecccceeecccc-hhhhhhcccccccchhhhh
Confidence 99988 4555443334444 89999998887652 2222 2445688999999886 4444555567788999999
Q ss_pred EecCCcCChhHHHHHHHhCCCCCeEecccCCCCCHHHHHHHHHhCCCCCeEecCCCCCCCHHHHHHHHhcCCcCCeEEcc
Q 012207 309 KFEDCPVARSGIKAIGNWHGSLKELSLSKCSGVTDEELSFVVQSHKELRKLDITCCRKITYASINSITKTCTSLTSLRME 388 (468)
Q Consensus 309 ~l~~~~~~~~~~~~l~~~~~~L~~L~l~~~~~~~~~~l~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~ 388 (468)
+++.|.+.......+. .+++|+.|+|+. +.++.-. +..+..+..|++|.+++|. ++...-. .+..+.+|++|+++
T Consensus 299 ~lS~NaI~rih~d~Ws-ftqkL~~LdLs~-N~i~~l~-~~sf~~L~~Le~LnLs~Ns-i~~l~e~-af~~lssL~~LdLr 373 (873)
T KOG4194|consen 299 DLSYNAIQRIHIDSWS-FTQKLKELDLSS-NRITRLD-EGSFRVLSQLEELNLSHNS-IDHLAEG-AFVGLSSLHKLDLR 373 (873)
T ss_pred ccchhhhheeecchhh-hcccceeEeccc-cccccCC-hhHHHHHHHhhhhcccccc-hHHHHhh-HHHHhhhhhhhcCc
Confidence 9999988776666665 678999999987 3444321 2224445789999999876 4433222 22357899999998
Q ss_pred CCCCCCH---HHHHHHHhcCCCCCEEEccCCCCChhhHHhcccCCCCCEEeeCCCCccCHHHHHHHHhcCcccCeeec
Q 012207 389 CCKLVSW---EAFVLIGQQCQYLEELDITENEVNDEGLKSISRCSKLSSLKLGICSNITDEGLKHVGSTCSMLKELDL 463 (468)
Q Consensus 389 ~~~~~~~---~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~~L~~L~l 463 (468)
.. .++. .+...+. .+++|++|.+.+|++....-.++.++++|+.|++.+| .|.......+. .+ .|++|.+
T Consensus 374 ~N-~ls~~IEDaa~~f~-gl~~LrkL~l~gNqlk~I~krAfsgl~~LE~LdL~~N-aiaSIq~nAFe-~m-~Lk~Lv~ 446 (873)
T KOG4194|consen 374 SN-ELSWCIEDAAVAFN-GLPSLRKLRLTGNQLKSIPKRAFSGLEALEHLDLGDN-AIASIQPNAFE-PM-ELKELVM 446 (873)
T ss_pred CC-eEEEEEecchhhhc-cchhhhheeecCceeeecchhhhccCcccceecCCCC-cceeecccccc-cc-hhhhhhh
Confidence 73 3431 2333343 6899999999999988888888889999999999999 66543333333 23 5665544
|
|
| >cd00116 LRR_RI Leucine-rich repeats (LRRs), ribonuclease inhibitor (RI)-like subfamily | Back alignment and domain information |
|---|
Probab=99.81 E-value=9.9e-18 Score=151.67 Aligned_cols=285 Identities=20% Similarity=0.174 Sum_probs=174.1
Q ss_pred EeccCCcccChHhHHHHHhcCCCCcEEeccCCCCCChHHH---HHHHhhCCCccEeeecccCCCC--CCccccccCCCCC
Q 012207 155 LWLARCKLITDLGIGRIAACCRKLKLLCLKWCIRVTDLGV---ELVALKCQEIRTLDLSYLPITE--KCLPPVVKLQYLE 229 (468)
Q Consensus 155 L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~---~~~~~~~~~L~~L~l~~~~~~~--~~~~~l~~~~~L~ 229 (468)
|+|..+ .++...+..+...+++|+++++.++ .+++.+. .......+.+++++++++.+.. ...
T Consensus 3 l~L~~~-~l~~~~~~~~~~~l~~L~~l~l~~~-~l~~~~~~~i~~~l~~~~~l~~l~l~~~~~~~~~~~~---------- 70 (319)
T cd00116 3 LSLKGE-LLKTERATELLPKLLCLQVLRLEGN-TLGEEAAKALASALRPQPSLKELCLSLNETGRIPRGL---------- 70 (319)
T ss_pred cccccC-cccccchHHHHHHHhhccEEeecCC-CCcHHHHHHHHHHHhhCCCceEEeccccccCCcchHH----------
Confidence 444442 3444444444444667888888776 3444332 2233355667777776654431 100
Q ss_pred eeeecCCCCCChHHHHHHHhcCCCCCEEEccCCcccC--hhhHHHHHhcCCccceEeecCCCCCc---hhHHHHhhcC-C
Q 012207 230 DLVLEGCHGIDDDGLASVEYSCKSLKALNLSKCQNIS--HVGLSSLIKGADYLQQLILAYSFWVS---ADLSKCLHNF-P 303 (468)
Q Consensus 230 ~L~l~~~~~~~~~~~~~l~~~~~~L~~L~l~~~~~~~--~~~~~~~~~~~~~L~~L~l~~~~~~~---~~~~~~l~~~-~ 303 (468)
......+.. +++|+.|+++++.... ...+..+... ++|++|+++++.... ..+...+..+ +
T Consensus 71 -----------~~~~~~l~~-~~~L~~L~l~~~~~~~~~~~~~~~l~~~-~~L~~L~ls~~~~~~~~~~~l~~~l~~~~~ 137 (319)
T cd00116 71 -----------QSLLQGLTK-GCGLQELDLSDNALGPDGCGVLESLLRS-SSLQELKLNNNGLGDRGLRLLAKGLKDLPP 137 (319)
T ss_pred -----------HHHHHHHHh-cCceeEEEccCCCCChhHHHHHHHHhcc-CcccEEEeeCCccchHHHHHHHHHHHhCCC
Confidence 111122333 5566666666654321 1122222333 457777776663221 1223345556 7
Q ss_pred CCCeeEecCCcCChhHHHHHH---HhCCCCCeEecccCCCCCHHHHHHHHH---hCCCCCeEecCCCCCCCHHHHHH---
Q 012207 304 MLQSIKFEDCPVARSGIKAIG---NWHGSLKELSLSKCSGVTDEELSFVVQ---SHKELRKLDITCCRKITYASINS--- 374 (468)
Q Consensus 304 ~L~~L~l~~~~~~~~~~~~l~---~~~~~L~~L~l~~~~~~~~~~l~~~~~---~~~~L~~L~l~~~~~~~~~~~~~--- 374 (468)
+|+.|++.+|.++......+. ..+++|++|++++| .+++.++..+.. .+++|+.|++++|. +++.+...
T Consensus 138 ~L~~L~L~~n~l~~~~~~~~~~~~~~~~~L~~L~l~~n-~l~~~~~~~l~~~l~~~~~L~~L~L~~n~-i~~~~~~~l~~ 215 (319)
T cd00116 138 ALEKLVLGRNRLEGASCEALAKALRANRDLKELNLANN-GIGDAGIRALAEGLKANCNLEVLDLNNNG-LTDEGASALAE 215 (319)
T ss_pred CceEEEcCCCcCCchHHHHHHHHHHhCCCcCEEECcCC-CCchHHHHHHHHHHHhCCCCCEEeccCCc-cChHHHHHHHH
Confidence 888888888887754444333 24568999999884 566655554433 44689999999885 66555443
Q ss_pred HHhcCCcCCeEEccCCCCCCHHHHHHHHhcC----CCCCEEEccCCCCChhhHHhc----ccCCCCCEEeeCCCCccCHH
Q 012207 375 ITKTCTSLTSLRMECCKLVSWEAFVLIGQQC----QYLEELDITENEVNDEGLKSI----SRCSKLSSLKLGICSNITDE 446 (468)
Q Consensus 375 ~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~----~~L~~L~l~~~~~~~~~~~~l----~~~~~L~~L~l~~~~~l~~~ 446 (468)
....+++|++|++++|. +++.++..+...+ +.|++|++++|.+++.+...+ ..+++|+.+++++| .++++
T Consensus 216 ~~~~~~~L~~L~ls~n~-l~~~~~~~l~~~~~~~~~~L~~L~l~~n~i~~~~~~~l~~~~~~~~~L~~l~l~~N-~l~~~ 293 (319)
T cd00116 216 TLASLKSLEVLNLGDNN-LTDAGAAALASALLSPNISLLTLSLSCNDITDDGAKDLAEVLAEKESLLELDLRGN-KFGEE 293 (319)
T ss_pred HhcccCCCCEEecCCCc-CchHHHHHHHHHHhccCCCceEEEccCCCCCcHHHHHHHHHHhcCCCccEEECCCC-CCcHH
Confidence 33467889999999864 7776766666543 789999999999986655443 35688999999999 88877
Q ss_pred HHHHHH---hcC-cccCeeecCCCCC
Q 012207 447 GLKHVG---STC-SMLKELDLYRFSS 468 (468)
Q Consensus 447 ~~~~~~---~~~-~~L~~L~l~~c~~ 468 (468)
+...+. ... +.|++++|.+++.
T Consensus 294 ~~~~~~~~~~~~~~~~~~~~~~~~~~ 319 (319)
T cd00116 294 GAQLLAESLLEPGNELESLWVKDDSF 319 (319)
T ss_pred HHHHHHHHHhhcCCchhhcccCCCCC
Confidence 655433 344 6899999998873
|
LRRs are 20-29 residue sequence motifs present in many proteins that participate in protein-protein interactions and have different functions and cellular locations. LRRs correspond to structural units consisting of a beta strand (LxxLxLxxN/CxL conserved pattern) and an alpha helix. This alignment contains 12 strands corresponding to 11 full repeats, consistent with the extent observed in the subfamily acting as Ran GTPase Activating Proteins (RanGAP1). |
| >cd00116 LRR_RI Leucine-rich repeats (LRRs), ribonuclease inhibitor (RI)-like subfamily | Back alignment and domain information |
|---|
Probab=99.75 E-value=2.4e-16 Score=142.64 Aligned_cols=283 Identities=22% Similarity=0.235 Sum_probs=169.2
Q ss_pred EEEccCCCccCHHHHHHHHcCCCCCeEeccCCcccChHhHHHH---HhcCCCCcEEeccCCCCCC--hHH---HHHHHhh
Q 012207 129 EIDLSNGTEMGDAAAAAIAEAKNLERLWLARCKLITDLGIGRI---AACCRKLKLLCLKWCIRVT--DLG---VELVALK 200 (468)
Q Consensus 129 ~L~l~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~---~~~~~~L~~L~l~~~~~~~--~~~---~~~~~~~ 200 (468)
.|+|..+...+......+..+.+|++|.+.++. +++.+...+ ....++++.+++.++. +. ... +......
T Consensus 2 ~l~L~~~~l~~~~~~~~~~~l~~L~~l~l~~~~-l~~~~~~~i~~~l~~~~~l~~l~l~~~~-~~~~~~~~~~~~~~l~~ 79 (319)
T cd00116 2 QLSLKGELLKTERATELLPKLLCLQVLRLEGNT-LGEEAAKALASALRPQPSLKELCLSLNE-TGRIPRGLQSLLQGLTK 79 (319)
T ss_pred ccccccCcccccchHHHHHHHhhccEEeecCCC-CcHHHHHHHHHHHhhCCCceEEeccccc-cCCcchHHHHHHHHHHh
Confidence 355554422223333455667889999999975 555444333 3456789999998863 33 222 2233345
Q ss_pred CCCccEeeecccCCCCCCccccccCC---CCCeeeecCCCCCChHHHHHHHhcCCCCCEEEccCCcccChhhHHHHHhcC
Q 012207 201 CQEIRTLDLSYLPITEKCLPPVVKLQ---YLEDLVLEGCHGIDDDGLASVEYSCKSLKALNLSKCQNISHVGLSSLIKGA 277 (468)
Q Consensus 201 ~~~L~~L~l~~~~~~~~~~~~l~~~~---~L~~L~l~~~~~~~~~~~~~l~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~ 277 (468)
+++|+.|+++++.+.......+..+. +|++|++++|. +.+.....+.. .+..+
T Consensus 80 ~~~L~~L~l~~~~~~~~~~~~~~~l~~~~~L~~L~ls~~~-~~~~~~~~l~~-----------------------~l~~~ 135 (319)
T cd00116 80 GCGLQELDLSDNALGPDGCGVLESLLRSSSLQELKLNNNG-LGDRGLRLLAK-----------------------GLKDL 135 (319)
T ss_pred cCceeEEEccCCCCChhHHHHHHHHhccCcccEEEeeCCc-cchHHHHHHHH-----------------------HHHhC
Confidence 77888999888766543333333222 36666666532 33222222111 11222
Q ss_pred -CccceEeecCCCCCc---hhHHHHhhcCCCCCeeEecCCcCChhHHHHHHH---hCCCCCeEecccCCCCCHHHHH---
Q 012207 278 -DYLQQLILAYSFWVS---ADLSKCLHNFPMLQSIKFEDCPVARSGIKAIGN---WHGSLKELSLSKCSGVTDEELS--- 347 (468)
Q Consensus 278 -~~L~~L~l~~~~~~~---~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~l~~---~~~~L~~L~l~~~~~~~~~~l~--- 347 (468)
++|+.|++++|.... ......+..+++|++|++.+|.+.+.....+.. ..++|++|++++| .+++.+..
T Consensus 136 ~~~L~~L~L~~n~l~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~l~~~l~~~~~L~~L~L~~n-~i~~~~~~~l~ 214 (319)
T cd00116 136 PPALEKLVLGRNRLEGASCEALAKALRANRDLKELNLANNGIGDAGIRALAEGLKANCNLEVLDLNNN-GLTDEGASALA 214 (319)
T ss_pred CCCceEEEcCCCcCCchHHHHHHHHHHhCCCcCEEECcCCCCchHHHHHHHHHHHhCCCCCEEeccCC-ccChHHHHHHH
Confidence 445555555443221 123344556677888888887777665555443 3358888888875 45554433
Q ss_pred HHHHhCCCCCeEecCCCCCCCHHHHHHHHhcC----CcCCeEEccCCCCCCHHHHHHH---HhcCCCCCEEEccCCCCCh
Q 012207 348 FVVQSHKELRKLDITCCRKITYASINSITKTC----TSLTSLRMECCKLVSWEAFVLI---GQQCQYLEELDITENEVND 420 (468)
Q Consensus 348 ~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~----~~L~~L~l~~~~~~~~~~~~~~---~~~~~~L~~L~l~~~~~~~ 420 (468)
..+..+++|+.|++++|. +++..+..+...+ +.|++|++++|. +++.+...+ ...+++|+.+++++|.+++
T Consensus 215 ~~~~~~~~L~~L~ls~n~-l~~~~~~~l~~~~~~~~~~L~~L~l~~n~-i~~~~~~~l~~~~~~~~~L~~l~l~~N~l~~ 292 (319)
T cd00116 215 ETLASLKSLEVLNLGDNN-LTDAGAAALASALLSPNISLLTLSLSCND-ITDDGAKDLAEVLAEKESLLELDLRGNKFGE 292 (319)
T ss_pred HHhcccCCCCEEecCCCc-CchHHHHHHHHHHhccCCCceEEEccCCC-CCcHHHHHHHHHHhcCCCccEEECCCCCCcH
Confidence 334456788999998876 6766666555443 789999998864 654444333 2355789999999999988
Q ss_pred hhHHhcc----cC-CCCCEEeeCCC
Q 012207 421 EGLKSIS----RC-SKLSSLKLGIC 440 (468)
Q Consensus 421 ~~~~~l~----~~-~~L~~L~l~~~ 440 (468)
.+...+. .. +.|+++++.++
T Consensus 293 ~~~~~~~~~~~~~~~~~~~~~~~~~ 317 (319)
T cd00116 293 EGAQLLAESLLEPGNELESLWVKDD 317 (319)
T ss_pred HHHHHHHHHHhhcCCchhhcccCCC
Confidence 7655554 24 68888888876
|
LRRs are 20-29 residue sequence motifs present in many proteins that participate in protein-protein interactions and have different functions and cellular locations. LRRs correspond to structural units consisting of a beta strand (LxxLxLxxN/CxL conserved pattern) and an alpha helix. This alignment contains 12 strands corresponding to 11 full repeats, consistent with the extent observed in the subfamily acting as Ran GTPase Activating Proteins (RanGAP1). |
| >KOG0444 consensus Cytoskeletal regulator Flightless-I (contains leucine-rich and gelsolin repeats) [Cytoskeleton] | Back alignment and domain information |
|---|
Probab=99.74 E-value=3.3e-20 Score=167.11 Aligned_cols=369 Identities=18% Similarity=0.175 Sum_probs=238.6
Q ss_pred CCCCcEEecCCCCCCChhHHHhhhcccccCCccEEecCCCCcccHHHHHHhhhcCCCCcEEEccCCCccCHHHHHHHHcC
Q 012207 70 YPFITQLDLSLCPRANDDALSIVSSSSWKLTLRSINLSRSRLFTKVGLSSLTVNCRFLTEIDLSNGTEMGDAAAAAIAEA 149 (468)
Q Consensus 70 ~~~l~~l~l~~~~~~~~~~~~~l~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~l~~~ 149 (468)
.|.++-++++++....+.....+ ..+.+++-|.+.... -..++.-...+.+|++|.+..+. +... ...+..+
T Consensus 6 LpFVrGvDfsgNDFsg~~FP~~v---~qMt~~~WLkLnrt~---L~~vPeEL~~lqkLEHLs~~HN~-L~~v-hGELs~L 77 (1255)
T KOG0444|consen 6 LPFVRGVDFSGNDFSGDRFPHDV---EQMTQMTWLKLNRTK---LEQVPEELSRLQKLEHLSMAHNQ-LISV-HGELSDL 77 (1255)
T ss_pred cceeecccccCCcCCCCcCchhH---HHhhheeEEEechhh---hhhChHHHHHHhhhhhhhhhhhh-hHhh-hhhhccc
Confidence 46677888887653333333322 445777888875532 22333333478889999988773 3332 3567788
Q ss_pred CCCCeEeccCCcccChHhHHHHHhcCCCCcEEeccCCCCCChHHHHHHHhhCCCccEeeecccCCCCCCccccccCCCCC
Q 012207 150 KNLERLWLARCKLITDLGIGRIAACCRKLKLLCLKWCIRVTDLGVELVALKCQEIRTLDLSYLPITEKCLPPVVKLQYLE 229 (468)
Q Consensus 150 ~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~ 229 (468)
|.|+.+.+..+. +...++..-.-.+..|+.|+++.+ .+.+.+- -....+++-.|++++|++....-.-+.++..|-
T Consensus 78 p~LRsv~~R~N~-LKnsGiP~diF~l~dLt~lDLShN-qL~EvP~--~LE~AKn~iVLNLS~N~IetIPn~lfinLtDLL 153 (1255)
T KOG0444|consen 78 PRLRSVIVRDNN-LKNSGIPTDIFRLKDLTILDLSHN-QLREVPT--NLEYAKNSIVLNLSYNNIETIPNSLFINLTDLL 153 (1255)
T ss_pred hhhHHHhhhccc-cccCCCCchhcccccceeeecchh-hhhhcch--hhhhhcCcEEEEcccCccccCCchHHHhhHhHh
Confidence 889988887753 333333322223788889999885 3443322 223567888999999887655445556788888
Q ss_pred eeeecCCCCCChHHHHHHHhcCCCCCEEEccCCcccChhhHHHHHhcCCccceEeecCCCCCchhHHHHhhcCCCCCeeE
Q 012207 230 DLVLEGCHGIDDDGLASVEYSCKSLKALNLSKCQNISHVGLSSLIKGADYLQQLILAYSFWVSADLSKCLHNFPMLQSIK 309 (468)
Q Consensus 230 ~L~l~~~~~~~~~~~~~l~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~L~~L~ 309 (468)
.|++++ +.+..... .+.. +..|++|.+++++. ....+. -+..+++|+.|.+++.......++..+..+.+|..++
T Consensus 154 fLDLS~-NrLe~LPP-Q~RR-L~~LqtL~Ls~NPL-~hfQLr-QLPsmtsL~vLhms~TqRTl~N~Ptsld~l~NL~dvD 228 (1255)
T KOG0444|consen 154 FLDLSN-NRLEMLPP-QIRR-LSMLQTLKLSNNPL-NHFQLR-QLPSMTSLSVLHMSNTQRTLDNIPTSLDDLHNLRDVD 228 (1255)
T ss_pred hhcccc-chhhhcCH-HHHH-HhhhhhhhcCCChh-hHHHHh-cCccchhhhhhhcccccchhhcCCCchhhhhhhhhcc
Confidence 888888 44443332 3444 77899999998763 222211 1234456777777776555566777788888999999
Q ss_pred ecCCcCChhHHHHHHHhCCCCCeEecccCCCCCHHHHHHHHHhCCCCCeEecCCCCCCCHHHHHHHHhcCCcCCeEEccC
Q 012207 310 FEDCPVARSGIKAIGNWHGSLKELSLSKCSGVTDEELSFVVQSHKELRKLDITCCRKITYASINSITKTCTSLTSLRMEC 389 (468)
Q Consensus 310 l~~~~~~~~~~~~l~~~~~~L~~L~l~~~~~~~~~~l~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~ 389 (468)
++.|+++.. +..+. .+++|+.|++++ +.++.- ..-.+.-.+|++|+++.|. ++. ++...-.+++|+.|-+.+
T Consensus 229 lS~N~Lp~v-Pecly-~l~~LrrLNLS~-N~iteL--~~~~~~W~~lEtLNlSrNQ-Lt~--LP~avcKL~kL~kLy~n~ 300 (1255)
T KOG0444|consen 229 LSENNLPIV-PECLY-KLRNLRRLNLSG-NKITEL--NMTEGEWENLETLNLSRNQ-LTV--LPDAVCKLTKLTKLYANN 300 (1255)
T ss_pred ccccCCCcc-hHHHh-hhhhhheeccCc-Cceeee--eccHHHHhhhhhhccccch-hcc--chHHHhhhHHHHHHHhcc
Confidence 998876532 22222 568999999998 456542 2222233688999998875 332 222233678888888776
Q ss_pred CCCCCHHHHHHHHhcCCCCCEEEccCCCCChhhHHhcccCCCCCEEeeCCCCccCHHHHHHHHhcCcccCeeecCCCCC
Q 012207 390 CKLVSWEAFVLIGQQCQYLEELDITENEVNDEGLKSISRCSKLSSLKLGICSNITDEGLKHVGSTCSMLKELDLYRFSS 468 (468)
Q Consensus 390 ~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~~L~~L~l~~c~~ 468 (468)
+.++-++++.-...+.+|+.+...+|.+.- .++.+++|++|+.|.++.|.-|+ ++.-+.-+|-|+.|++..|++
T Consensus 301 -NkL~FeGiPSGIGKL~~Levf~aanN~LEl-VPEglcRC~kL~kL~L~~NrLiT---LPeaIHlL~~l~vLDlreNpn 374 (1255)
T KOG0444|consen 301 -NKLTFEGIPSGIGKLIQLEVFHAANNKLEL-VPEGLCRCVKLQKLKLDHNRLIT---LPEAIHLLPDLKVLDLRENPN 374 (1255)
T ss_pred -CcccccCCccchhhhhhhHHHHhhcccccc-CchhhhhhHHHHHhcccccceee---chhhhhhcCCcceeeccCCcC
Confidence 556655554433366778888888776554 45778889999999999885555 555555688999999998875
|
|
| >PLN03210 Resistant to P | Back alignment and domain information |
|---|
Probab=99.74 E-value=1.2e-17 Score=173.28 Aligned_cols=290 Identities=19% Similarity=0.233 Sum_probs=171.6
Q ss_pred CCCCCeEeccCCcccChHhHHHHHhcCCCCcEEeccCCCCCChHHHHHHHhhCCCccEeeecccCCCCCCccccccCCCC
Q 012207 149 AKNLERLWLARCKLITDLGIGRIAACCRKLKLLCLKWCIRVTDLGVELVALKCQEIRTLDLSYLPITEKCLPPVVKLQYL 228 (468)
Q Consensus 149 ~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L 228 (468)
..+|++|++.++. +... ..-...+++|+.|+++++..+...+- ...+++|+.|++.+|......+..+.++++|
T Consensus 610 ~~~L~~L~L~~s~-l~~L--~~~~~~l~~Lk~L~Ls~~~~l~~ip~---ls~l~~Le~L~L~~c~~L~~lp~si~~L~~L 683 (1153)
T PLN03210 610 PENLVKLQMQGSK-LEKL--WDGVHSLTGLRNIDLRGSKNLKEIPD---LSMATNLETLKLSDCSSLVELPSSIQYLNKL 683 (1153)
T ss_pred ccCCcEEECcCcc-cccc--ccccccCCCCCEEECCCCCCcCcCCc---cccCCcccEEEecCCCCccccchhhhccCCC
Confidence 4566666666543 2211 01112366777777766544333221 2256777777777764434445556667777
Q ss_pred CeeeecCCCCCChHHHHHHHhcCCCCCEEEccCCcccChhhHHHHHhcCCccceEeecCCCCCchhHHHHhhcCCCCCee
Q 012207 229 EDLVLEGCHGIDDDGLASVEYSCKSLKALNLSKCQNISHVGLSSLIKGADYLQQLILAYSFWVSADLSKCLHNFPMLQSI 308 (468)
Q Consensus 229 ~~L~l~~~~~~~~~~~~~l~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~L~~L 308 (468)
+.|++++|..+...... + .+++|+.|++++|..+.. +....++|+.|+++++. +. .++..+ .+++|++|
T Consensus 684 ~~L~L~~c~~L~~Lp~~-i--~l~sL~~L~Lsgc~~L~~-----~p~~~~nL~~L~L~~n~-i~-~lP~~~-~l~~L~~L 752 (1153)
T PLN03210 684 EDLDMSRCENLEILPTG-I--NLKSLYRLNLSGCSRLKS-----FPDISTNISWLDLDETA-IE-EFPSNL-RLENLDEL 752 (1153)
T ss_pred CEEeCCCCCCcCccCCc-C--CCCCCCEEeCCCCCCccc-----cccccCCcCeeecCCCc-cc-cccccc-cccccccc
Confidence 77777776655433221 1 266777777777653321 12224567777776653 11 122211 45667777
Q ss_pred EecCCcCCh---h--H-HHHHHHhCCCCCeEecccCCCCCHHHHHHHHHhCCCCCeEecCCCCCCCHHHHHHHHhcCCcC
Q 012207 309 KFEDCPVAR---S--G-IKAIGNWHGSLKELSLSKCSGVTDEELSFVVQSHKELRKLDITCCRKITYASINSITKTCTSL 382 (468)
Q Consensus 309 ~l~~~~~~~---~--~-~~~l~~~~~~L~~L~l~~~~~~~~~~l~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L 382 (468)
.+.++.... . . .......+++|+.|++++|..... ++..+.++++|+.|++++|..+...+ .. ..+++|
T Consensus 753 ~l~~~~~~~l~~~~~~l~~~~~~~~~sL~~L~Ls~n~~l~~--lP~si~~L~~L~~L~Ls~C~~L~~LP--~~-~~L~sL 827 (1153)
T PLN03210 753 ILCEMKSEKLWERVQPLTPLMTMLSPSLTRLFLSDIPSLVE--LPSSIQNLHKLEHLEIENCINLETLP--TG-INLESL 827 (1153)
T ss_pred cccccchhhccccccccchhhhhccccchheeCCCCCCccc--cChhhhCCCCCCEEECCCCCCcCeeC--CC-CCcccc
Confidence 666533110 0 0 001111346888888888654432 45556778899999998887665322 11 157889
Q ss_pred CeEEccCCCCCCHHHHHHHHhcCCCCCEEEccCCCCChhhHHhcccCCCCCEEeeCCCCccCHHHHHHHHhcCcccCeee
Q 012207 383 TSLRMECCKLVSWEAFVLIGQQCQYLEELDITENEVNDEGLKSISRCSKLSSLKLGICSNITDEGLKHVGSTCSMLKELD 462 (468)
Q Consensus 383 ~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~~L~~L~ 462 (468)
+.|++++|..+.. +....++|+.|++++|.++.. +..+..+++|+.|++++|.+++. +......+++|+.++
T Consensus 828 ~~L~Ls~c~~L~~-----~p~~~~nL~~L~Ls~n~i~~i-P~si~~l~~L~~L~L~~C~~L~~--l~~~~~~L~~L~~L~ 899 (1153)
T PLN03210 828 ESLDLSGCSRLRT-----FPDISTNISDLNLSRTGIEEV-PWWIEKFSNLSFLDMNGCNNLQR--VSLNISKLKHLETVD 899 (1153)
T ss_pred CEEECCCCCcccc-----ccccccccCEeECCCCCCccC-hHHHhcCCCCCEEECCCCCCcCc--cCcccccccCCCeee
Confidence 9999998876542 122346888999988888764 35677888999999999878774 443445678888888
Q ss_pred cCCCCC
Q 012207 463 LYRFSS 468 (468)
Q Consensus 463 l~~c~~ 468 (468)
+.+|++
T Consensus 900 l~~C~~ 905 (1153)
T PLN03210 900 FSDCGA 905 (1153)
T ss_pred cCCCcc
Confidence 888864
|
syringae 6; Provisional |
| >KOG2120 consensus SCF ubiquitin ligase, Skp2 component [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=99.71 E-value=1.9e-17 Score=135.84 Aligned_cols=185 Identities=18% Similarity=0.298 Sum_probs=81.9
Q ss_pred CCCEEEccCCcccChhhHHHHHhcCCccceEeecCCCCCchhHHHHhhcCCCCCeeEecCCc-CChhHHHHHHHhCCCCC
Q 012207 253 SLKALNLSKCQNISHVGLSSLIKGADYLQQLILAYSFWVSADLSKCLHNFPMLQSIKFEDCP-VARSGIKAIGNWHGSLK 331 (468)
Q Consensus 253 ~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~L~~L~l~~~~-~~~~~~~~l~~~~~~L~ 331 (468)
.|+.++++... ++...+..++..|..|+.|.+.+. .+.+.+...+++-.+|+.|+++.|. ++..+...+...|..|.
T Consensus 186 Rlq~lDLS~s~-it~stl~~iLs~C~kLk~lSlEg~-~LdD~I~~~iAkN~~L~~lnlsm~sG~t~n~~~ll~~scs~L~ 263 (419)
T KOG2120|consen 186 RLQHLDLSNSV-ITVSTLHGILSQCSKLKNLSLEGL-RLDDPIVNTIAKNSNLVRLNLSMCSGFTENALQLLLSSCSRLD 263 (419)
T ss_pred hhHHhhcchhh-eeHHHHHHHHHHHHhhhhcccccc-ccCcHHHHHHhccccceeeccccccccchhHHHHHHHhhhhHh
Confidence 34555554432 334444444444555555555443 3444444444444455555555443 44444444444444555
Q ss_pred eEecccCCCCCHHHHHHHHHhCCCCCeEecCCCC-CCCHHHHHHHHhcCCcCCeEEccCCCCCCHHHHHHHHhcCCCCCE
Q 012207 332 ELSLSKCSGVTDEELSFVVQSHKELRKLDITCCR-KITYASINSITKTCTSLTSLRMECCKLVSWEAFVLIGQQCQYLEE 410 (468)
Q Consensus 332 ~L~l~~~~~~~~~~l~~~~~~~~~L~~L~l~~~~-~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~ 410 (468)
+|+++.|...++..-..+..--++|+.|++++|. ++.+..+..+...||+|.+|+++.|..+++..+..+. .++.|++
T Consensus 264 ~LNlsWc~l~~~~Vtv~V~hise~l~~LNlsG~rrnl~~sh~~tL~~rcp~l~~LDLSD~v~l~~~~~~~~~-kf~~L~~ 342 (419)
T KOG2120|consen 264 ELNLSWCFLFTEKVTVAVAHISETLTQLNLSGYRRNLQKSHLSTLVRRCPNLVHLDLSDSVMLKNDCFQEFF-KFNYLQH 342 (419)
T ss_pred hcCchHhhccchhhhHHHhhhchhhhhhhhhhhHhhhhhhHHHHHHHhCCceeeeccccccccCchHHHHHH-hcchhee
Confidence 5555544333333111111122444555554432 2233334444444555555555554444443333333 4445555
Q ss_pred EEccCC-CCChhhHHhcccCCCCCEEeeCCC
Q 012207 411 LDITEN-EVNDEGLKSISRCSKLSSLKLGIC 440 (468)
Q Consensus 411 L~l~~~-~~~~~~~~~l~~~~~L~~L~l~~~ 440 (468)
|.++.| .+..+.+..+...|+|.+|++.+|
T Consensus 343 lSlsRCY~i~p~~~~~l~s~psl~yLdv~g~ 373 (419)
T KOG2120|consen 343 LSLSRCYDIIPETLLELNSKPSLVYLDVFGC 373 (419)
T ss_pred eehhhhcCCChHHeeeeccCcceEEEEeccc
Confidence 555444 333333333444445555555443
|
|
| >PLN03210 Resistant to P | Back alignment and domain information |
|---|
Probab=99.69 E-value=1.9e-16 Score=164.61 Aligned_cols=346 Identities=16% Similarity=0.169 Sum_probs=194.6
Q ss_pred HHHhccCCCCcEEecCCCC--CCCh---hHHHhhhcccccCCccEEecCCCCcccHHHHHHhhhcCCCCcEEEccCCCcc
Q 012207 64 SRTSARYPFITQLDLSLCP--RAND---DALSIVSSSSWKLTLRSINLSRSRLFTKVGLSSLTVNCRFLTEIDLSNGTEM 138 (468)
Q Consensus 64 ~~~~~~~~~l~~l~l~~~~--~~~~---~~~~~l~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~ 138 (468)
...+..+++|+.|.+.... .... .....+ .....+|+.|.+.++.. ..++..+ ...+|++|++.++ .+
T Consensus 551 ~~aF~~m~~L~~L~~~~~~~~~~~~~~~~lp~~~--~~lp~~Lr~L~~~~~~l---~~lP~~f-~~~~L~~L~L~~s-~l 623 (1153)
T PLN03210 551 ENAFKGMRNLLFLKFYTKKWDQKKEVRWHLPEGF--DYLPPKLRLLRWDKYPL---RCMPSNF-RPENLVKLQMQGS-KL 623 (1153)
T ss_pred HHHHhcCccccEEEEecccccccccceeecCcch--hhcCcccEEEEecCCCC---CCCCCcC-CccCCcEEECcCc-cc
Confidence 3456677778777775321 0000 000011 12234577777765421 1122222 4578888888876 34
Q ss_pred CHHHHHHHHcCCCCCeEeccCCcccChHhHHHHHhcCCCCcEEeccCCCCCChHHHHHHHhhCCCccEeeecccCCCCCC
Q 012207 139 GDAAAAAIAEAKNLERLWLARCKLITDLGIGRIAACCRKLKLLCLKWCIRVTDLGVELVALKCQEIRTLDLSYLPITEKC 218 (468)
Q Consensus 139 ~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~ 218 (468)
... +..+..+++|+.|+++++..+.... .+ ..+++|+.|++.+|..+...+ .....+++|+.|++++|......
T Consensus 624 ~~L-~~~~~~l~~Lk~L~Ls~~~~l~~ip--~l-s~l~~Le~L~L~~c~~L~~lp--~si~~L~~L~~L~L~~c~~L~~L 697 (1153)
T PLN03210 624 EKL-WDGVHSLTGLRNIDLRGSKNLKEIP--DL-SMATNLETLKLSDCSSLVELP--SSIQYLNKLEDLDMSRCENLEIL 697 (1153)
T ss_pred ccc-ccccccCCCCCEEECCCCCCcCcCC--cc-ccCCcccEEEecCCCCccccc--hhhhccCCCCEEeCCCCCCcCcc
Confidence 432 2345668889999988765443322 22 237889999998886655433 23347788999999887332222
Q ss_pred ccccccCCCCCeeeecCCCCCChHHHHHHHhcCCCCCEEEccCCcccChhhHHHHHhcCCccceEeecCCCCC------c
Q 012207 219 LPPVVKLQYLEDLVLEGCHGIDDDGLASVEYSCKSLKALNLSKCQNISHVGLSSLIKGADYLQQLILAYSFWV------S 292 (468)
Q Consensus 219 ~~~l~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~------~ 292 (468)
+.. .++++|+.|++++|..+... .....+|+.|++.++. +.. ++.. ..+++|++|.+..+... .
T Consensus 698 p~~-i~l~sL~~L~Lsgc~~L~~~-----p~~~~nL~~L~L~~n~-i~~--lP~~-~~l~~L~~L~l~~~~~~~l~~~~~ 767 (1153)
T PLN03210 698 PTG-INLKSLYRLNLSGCSRLKSF-----PDISTNISWLDLDETA-IEE--FPSN-LRLENLDELILCEMKSEKLWERVQ 767 (1153)
T ss_pred CCc-CCCCCCCEEeCCCCCCcccc-----ccccCCcCeeecCCCc-ccc--cccc-ccccccccccccccchhhcccccc
Confidence 222 26788888888887654322 1224678888887765 211 1111 13466776766553210 0
Q ss_pred hhHHHHhhcCCCCCeeEecCCcCChhHHHHHHHhCCCCCeEecccCCCCCHHHHHHHHHhCCCCCeEecCCCCCCCHHHH
Q 012207 293 ADLSKCLHNFPMLQSIKFEDCPVARSGIKAIGNWHGSLKELSLSKCSGVTDEELSFVVQSHKELRKLDITCCRKITYASI 372 (468)
Q Consensus 293 ~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~l~~~~~~L~~L~l~~~~~~~~~~l~~~~~~~~~L~~L~l~~~~~~~~~~~ 372 (468)
..........++|+.|++++|......+..+. .+++|+.|++++|..+.. ++... .+++|+.|++++|..+...
T Consensus 768 ~l~~~~~~~~~sL~~L~Ls~n~~l~~lP~si~-~L~~L~~L~Ls~C~~L~~--LP~~~-~L~sL~~L~Ls~c~~L~~~-- 841 (1153)
T PLN03210 768 PLTPLMTMLSPSLTRLFLSDIPSLVELPSSIQ-NLHKLEHLEIENCINLET--LPTGI-NLESLESLDLSGCSRLRTF-- 841 (1153)
T ss_pred ccchhhhhccccchheeCCCCCCccccChhhh-CCCCCCEEECCCCCCcCe--eCCCC-CccccCEEECCCCCccccc--
Confidence 00111122346788888877764444444444 677888888877765442 22212 4677888888877655421
Q ss_pred HHHHhcCCcCCeEEccCCCCCCHHHHHHHHhcCCCCCEEEccCC-CCChhhHHhcccCCCCCEEeeCCCCccCH
Q 012207 373 NSITKTCTSLTSLRMECCKLVSWEAFVLIGQQCQYLEELDITEN-EVNDEGLKSISRCSKLSSLKLGICSNITD 445 (468)
Q Consensus 373 ~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~-~~~~~~~~~l~~~~~L~~L~l~~~~~l~~ 445 (468)
....++|+.|+++++ .++. ++.....+++|+.|++++| .+... ...+..+++|+.+++++|..++.
T Consensus 842 ---p~~~~nL~~L~Ls~n-~i~~--iP~si~~l~~L~~L~L~~C~~L~~l-~~~~~~L~~L~~L~l~~C~~L~~ 908 (1153)
T PLN03210 842 ---PDISTNISDLNLSRT-GIEE--VPWWIEKFSNLSFLDMNGCNNLQRV-SLNISKLKHLETVDFSDCGALTE 908 (1153)
T ss_pred ---cccccccCEeECCCC-CCcc--ChHHHhcCCCCCEEECCCCCCcCcc-CcccccccCCCeeecCCCccccc
Confidence 122467778887763 3432 2222236778888888775 44442 23445677777778877766653
|
syringae 6; Provisional |
| >KOG0444 consensus Cytoskeletal regulator Flightless-I (contains leucine-rich and gelsolin repeats) [Cytoskeleton] | Back alignment and domain information |
|---|
Probab=99.65 E-value=1.3e-18 Score=157.03 Aligned_cols=344 Identities=16% Similarity=0.162 Sum_probs=231.9
Q ss_pred ccCCccEEecCCCCcccHHHHHHhhhcCCCCcEEEccCCCccCHHHHHHHHcCCCCCeEeccCCcccChHhHHHHHhcCC
Q 012207 97 WKLTLRSINLSRSRLFTKVGLSSLTVNCRFLTEIDLSNGTEMGDAAAAAIAEAKNLERLWLARCKLITDLGIGRIAACCR 176 (468)
Q Consensus 97 ~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~ 176 (468)
..+-++-++++++. +....++.-.+.++.++.|.+... .+...+ ..++.+.+|++|.+..+..++-. ..+. .+|
T Consensus 5 VLpFVrGvDfsgND-Fsg~~FP~~v~qMt~~~WLkLnrt-~L~~vP-eEL~~lqkLEHLs~~HN~L~~vh--GELs-~Lp 78 (1255)
T KOG0444|consen 5 VLPFVRGVDFSGND-FSGDRFPHDVEQMTQMTWLKLNRT-KLEQVP-EELSRLQKLEHLSMAHNQLISVH--GELS-DLP 78 (1255)
T ss_pred ccceeecccccCCc-CCCCcCchhHHHhhheeEEEechh-hhhhCh-HHHHHHhhhhhhhhhhhhhHhhh--hhhc-cch
Confidence 35667778888765 333333444447889999999876 455444 67899999999999886533221 2222 378
Q ss_pred CCcEEeccCCCCCChHHHHHHHhhCCCccEeeecccCCCCCCccccccCCCCCeeeecCCCCCChHHHHHHHhcCCCCCE
Q 012207 177 KLKLLCLKWCIRVTDLGVELVALKCQEIRTLDLSYLPITEKCLPPVVKLQYLEDLVLEGCHGIDDDGLASVEYSCKSLKA 256 (468)
Q Consensus 177 ~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~~L~~ 256 (468)
.|+++.+..+ .+...+++.-+-.+..|+.|+++.|.+. +.+..+....++-.|++++ +++....-..+.. +..|-.
T Consensus 79 ~LRsv~~R~N-~LKnsGiP~diF~l~dLt~lDLShNqL~-EvP~~LE~AKn~iVLNLS~-N~IetIPn~lfin-LtDLLf 154 (1255)
T KOG0444|consen 79 RLRSVIVRDN-NLKNSGIPTDIFRLKDLTILDLSHNQLR-EVPTNLEYAKNSIVLNLSY-NNIETIPNSLFIN-LTDLLF 154 (1255)
T ss_pred hhHHHhhhcc-ccccCCCCchhcccccceeeecchhhhh-hcchhhhhhcCcEEEEccc-CccccCCchHHHh-hHhHhh
Confidence 8999888775 3333333333337889999999999776 5667777788899999998 5565554444444 788888
Q ss_pred EEccCCcccChhhHHHHHhcCCccceEeecCCCCCchhHHHHhhcCCCCCeeEecCCcCChhH-HHHHHHhCCCCCeEec
Q 012207 257 LNLSKCQNISHVGLSSLIKGADYLQQLILAYSFWVSADLSKCLHNFPMLQSIKFEDCPVARSG-IKAIGNWHGSLKELSL 335 (468)
Q Consensus 257 L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~-~~~l~~~~~~L~~L~l 335 (468)
|+++++.. ..++.-...+.+|++|.+++++ +...-...+..+++|+.|.++++.-+-.. +..+- .+.+|..+++
T Consensus 155 LDLS~NrL---e~LPPQ~RRL~~LqtL~Ls~NP-L~hfQLrQLPsmtsL~vLhms~TqRTl~N~Ptsld-~l~NL~dvDl 229 (1255)
T KOG0444|consen 155 LDLSNNRL---EMLPPQIRRLSMLQTLKLSNNP-LNHFQLRQLPSMTSLSVLHMSNTQRTLDNIPTSLD-DLHNLRDVDL 229 (1255)
T ss_pred hccccchh---hhcCHHHHHHhhhhhhhcCCCh-hhHHHHhcCccchhhhhhhcccccchhhcCCCchh-hhhhhhhccc
Confidence 89988752 2233345566789999998874 33333344556667888888887533222 22222 4578999999
Q ss_pred ccCCCCCHHHHHHHHHhCCCCCeEecCCCCCCCHHHHHHHHhcCCcCCeEEccCCCCCCHHHHHHHHhcCCCCCEEEccC
Q 012207 336 SKCSGVTDEELSFVVQSHKELRKLDITCCRKITYASINSITKTCTSLTSLRMECCKLVSWEAFVLIGQQCQYLEELDITE 415 (468)
Q Consensus 336 ~~~~~~~~~~l~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~ 415 (468)
+. ++++- ++..+-.+++|+.|++++|. ++...... ..+.+|+.|+++.. .++. ++...-.+++|+.|.+.+
T Consensus 230 S~-N~Lp~--vPecly~l~~LrrLNLS~N~-iteL~~~~--~~W~~lEtLNlSrN-QLt~--LP~avcKL~kL~kLy~n~ 300 (1255)
T KOG0444|consen 230 SE-NNLPI--VPECLYKLRNLRRLNLSGNK-ITELNMTE--GEWENLETLNLSRN-QLTV--LPDAVCKLTKLTKLYANN 300 (1255)
T ss_pred cc-cCCCc--chHHHhhhhhhheeccCcCc-eeeeeccH--HHHhhhhhhccccc-hhcc--chHHHhhhHHHHHHHhcc
Confidence 87 45542 45555677899999999876 55443322 34688999999883 3432 222222678999999999
Q ss_pred CCCChhhH-HhcccCCCCCEEeeCCCCccCHHHHHHHHhcCcccCeeecCCCC
Q 012207 416 NEVNDEGL-KSISRCSKLSSLKLGICSNITDEGLKHVGSTCSMLKELDLYRFS 467 (468)
Q Consensus 416 ~~~~~~~~-~~l~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~~L~~L~l~~c~ 467 (468)
|.++-+++ ..++++.+|+.+...+| .+.- ++.-...|+.|+.|.+..|.
T Consensus 301 NkL~FeGiPSGIGKL~~Levf~aanN-~LEl--VPEglcRC~kL~kL~L~~Nr 350 (1255)
T KOG0444|consen 301 NKLTFEGIPSGIGKLIQLEVFHAANN-KLEL--VPEGLCRCVKLQKLKLDHNR 350 (1255)
T ss_pred CcccccCCccchhhhhhhHHHHhhcc-cccc--CchhhhhhHHHHHhcccccc
Confidence 97776543 45788889999999988 7763 44444589999999998774
|
|
| >KOG1947 consensus Leucine rich repeat proteins, some proteins contain F-box [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.62 E-value=2e-15 Score=145.08 Aligned_cols=273 Identities=28% Similarity=0.362 Sum_probs=122.3
Q ss_pred CCcccCcHHHHHHHHhhhcCChhhhhHHhhhhhhHHHHHHhhhhhccccc-----cchHHHHhccCCCCcEEecCCCCCC
Q 012207 10 NPFDFLSEEIIFNILDHLNNDPFARKSFSLTCRNFYSIESRHRKILKPLC-----AETLSRTSARYPFITQLDLSLCPRA 84 (468)
Q Consensus 10 ~~~~~LP~eil~~I~~~~l~~~~~~~~~~~v~~~w~~~~~~~~~~~~~~~-----~~~~~~~~~~~~~l~~l~l~~~~~~ 84 (468)
......|++....++. ..+ ..+......++++|..........+.... ..........+..+..+........
T Consensus 43 ~~~~~~~~~~~~~~~~-~~~-~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 120 (482)
T KOG1947|consen 43 RFTLLLPDELLADLLL-KLV-VLDRESVSLVTRLWLTLLGSLRLRLKSLSVSSVDLDLLASLLVRFKSLTLLDLLSLSKV 120 (482)
T ss_pred eeeeccccchhhhccc-ccc-cccccccchhhhhhhhhhhhhhhhhhhcccCCcCHHHhhhhhhcchhhHHHHhccCccc
Confidence 3566677788888777 665 67777788888888876554322221111 1112223333333333332222111
Q ss_pred ChhHHHhhh-cccccCCccEEecCCCCcccHHHHHHhhhcCCCCcEEEccCCCcc-CHHHHH-HHHcCCCCCeEeccCCc
Q 012207 85 NDDALSIVS-SSSWKLTLRSINLSRSRLFTKVGLSSLTVNCRFLTEIDLSNGTEM-GDAAAA-AIAEAKNLERLWLARCK 161 (468)
Q Consensus 85 ~~~~~~~l~-~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~-~~~~~~-~l~~~~~L~~L~l~~~~ 161 (468)
.......+. ........ .................+...+..++.+.+..+... ...... ....++.|+.+.+.++.
T Consensus 121 ~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~L~~l~l~~~~ 199 (482)
T KOG1947|consen 121 STLSLLSIFSLLVKLRNL-LLNLSLRSLLSGERLLELSRGLANLESLSLSCCGSLLLDKILLRLLSSCPLLKRLSLSGCS 199 (482)
T ss_pred cccchhhhhhhhhhcchh-hccccccccccccchHHHHHHHHHHheeeeecccccccHHHHHHHHhhCchhhHhhhcccc
Confidence 111111110 00011111 111111111111222222223334444444333211 111112 22235666666666665
Q ss_pred ccChHhHHHHHhcCCCCcEEeccC-CCCCChHH--HHHHHhhCCCccEeeecccC-CCCCCcccccc-CCCCCeeeecCC
Q 012207 162 LITDLGIGRIAACCRKLKLLCLKW-CIRVTDLG--VELVALKCQEIRTLDLSYLP-ITEKCLPPVVK-LQYLEDLVLEGC 236 (468)
Q Consensus 162 ~~~~~~~~~~~~~~~~L~~L~l~~-~~~~~~~~--~~~~~~~~~~L~~L~l~~~~-~~~~~~~~l~~-~~~L~~L~l~~~ 236 (468)
.+.+.++..+...+++|+.|++++ +......+ ...+...|++|+.|+++.+. +++..+..+.. +++|++|.+.+|
T Consensus 200 ~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~L~~l~l~~~~~isd~~l~~l~~~c~~L~~L~l~~c 279 (482)
T KOG1947|consen 200 KITDDSLDALALKCPNLEELDLSGCCLLITLSPLLLLLLLSICRKLKSLDLSGCGLVTDIGLSALASRCPNLETLSLSNC 279 (482)
T ss_pred cCChhhHHHHHhhCchhheecccCcccccccchhHhhhhhhhcCCcCccchhhhhccCchhHHHHHhhCCCcceEccCCC
Confidence 555555555555566666666654 22222111 22233455555566655553 45555554443 555555555555
Q ss_pred CCCChHHHHHHHhcCCCCCEEEccCCcccChhhHHHHHhcCCccceEee
Q 012207 237 HGIDDDGLASVEYSCKSLKALNLSKCQNISHVGLSSLIKGADYLQQLIL 285 (468)
Q Consensus 237 ~~~~~~~~~~l~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l 285 (468)
..+++.++..+...++.|++|++++|..+++.++..+...+++++.|.+
T Consensus 280 ~~lt~~gl~~i~~~~~~L~~L~l~~c~~~~d~~l~~~~~~c~~l~~l~~ 328 (482)
T KOG1947|consen 280 SNLTDEGLVSIAERCPSLRELDLSGCHGLTDSGLEALLKNCPNLRELKL 328 (482)
T ss_pred CccchhHHHHHHHhcCcccEEeeecCccchHHHHHHHHHhCcchhhhhh
Confidence 4455555555555555555555555555555545444444555544443
|
|
| >KOG1947 consensus Leucine rich repeat proteins, some proteins contain F-box [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.51 E-value=5.7e-14 Score=135.05 Aligned_cols=137 Identities=31% Similarity=0.480 Sum_probs=72.0
Q ss_pred CCCCCeeeecCCCCCChHHHHHHHhcCCCCCEEEccCC-cccChh--hHHHHHhcCCccceEeecCCCCCchhHHHHhhc
Q 012207 225 LQYLEDLVLEGCHGIDDDGLASVEYSCKSLKALNLSKC-QNISHV--GLSSLIKGADYLQQLILAYSFWVSADLSKCLHN 301 (468)
Q Consensus 225 ~~~L~~L~l~~~~~~~~~~~~~l~~~~~~L~~L~l~~~-~~~~~~--~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~l~~ 301 (468)
++.|+.+.+.+|..+.+.....+...++.|+.|+++++ ...... ....+...+++|+.++++++..+++.....+..
T Consensus 187 ~~~L~~l~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~L~~l~l~~~~~isd~~l~~l~~ 266 (482)
T KOG1947|consen 187 CPLLKRLSLSGCSKITDDSLDALALKCPNLEELDLSGCCLLITLSPLLLLLLLSICRKLKSLDLSGCGLVTDIGLSALAS 266 (482)
T ss_pred CchhhHhhhcccccCChhhHHHHHhhCchhheecccCcccccccchhHhhhhhhhcCCcCccchhhhhccCchhHHHHHh
Confidence 45555555555555555444444444566666665541 111111 122234444555555555554444444444443
Q ss_pred -CCCCCeeEecCCc-CChhHHHHHHHhCCCCCeEecccCCCCCHHHHHHHHHhCCCCCeEec
Q 012207 302 -FPMLQSIKFEDCP-VARSGIKAIGNWHGSLKELSLSKCSGVTDEELSFVVQSHKELRKLDI 361 (468)
Q Consensus 302 -~~~L~~L~l~~~~-~~~~~~~~l~~~~~~L~~L~l~~~~~~~~~~l~~~~~~~~~L~~L~l 361 (468)
+++|+.|.+.+|. +++.++..++..++.|++|++++|..+++.++..+..+|++|+.|.+
T Consensus 267 ~c~~L~~L~l~~c~~lt~~gl~~i~~~~~~L~~L~l~~c~~~~d~~l~~~~~~c~~l~~l~~ 328 (482)
T KOG1947|consen 267 RCPNLETLSLSNCSNLTDEGLVSIAERCPSLRELDLSGCHGLTDSGLEALLKNCPNLRELKL 328 (482)
T ss_pred hCCCcceEccCCCCccchhHHHHHHHhcCcccEEeeecCccchHHHHHHHHHhCcchhhhhh
Confidence 5566666655555 56666666666666666666666666655555555555555555443
|
|
| >KOG1909 consensus Ran GTPase-activating protein [RNA processing and modification; Nuclear structure; Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=99.47 E-value=9.6e-13 Score=111.12 Aligned_cols=201 Identities=21% Similarity=0.310 Sum_probs=128.3
Q ss_pred CCCCCEEEccCCcccC--hhhHHHHHhcCCccceEeecCCCCCchhHH-------------HHhhcCCCCCeeEecCCcC
Q 012207 251 CKSLKALNLSKCQNIS--HVGLSSLIKGADYLQQLILAYSFWVSADLS-------------KCLHNFPMLQSIKFEDCPV 315 (468)
Q Consensus 251 ~~~L~~L~l~~~~~~~--~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~-------------~~l~~~~~L~~L~l~~~~~ 315 (468)
+|+|++++++++..-. ..++..++.++..|++|.+.+| .+....- ...+.-+.|+.+....|.+
T Consensus 91 ~~~L~~ldLSDNA~G~~g~~~l~~ll~s~~~L~eL~L~N~-Glg~~ag~~l~~al~~l~~~kk~~~~~~Lrv~i~~rNrl 169 (382)
T KOG1909|consen 91 CPKLQKLDLSDNAFGPKGIRGLEELLSSCTDLEELYLNNC-GLGPEAGGRLGRALFELAVNKKAASKPKLRVFICGRNRL 169 (382)
T ss_pred CCceeEeeccccccCccchHHHHHHHHhccCHHHHhhhcC-CCChhHHHHHHHHHHHHHHHhccCCCcceEEEEeecccc
Confidence 5666666666654211 1234455566666666666666 2322211 1233456888888888877
Q ss_pred ChhHHHHH---HHhCCCCCeEecccCCCCCHHHHH---HHHHhCCCCCeEecCCCCCCCHHHHHHH---HhcCCcCCeEE
Q 012207 316 ARSGIKAI---GNWHGSLKELSLSKCSGVTDEELS---FVVQSHKELRKLDITCCRKITYASINSI---TKTCTSLTSLR 386 (468)
Q Consensus 316 ~~~~~~~l---~~~~~~L~~L~l~~~~~~~~~~l~---~~~~~~~~L~~L~l~~~~~~~~~~~~~~---~~~~~~L~~L~ 386 (468)
.+.+...+ .+..+.|+.+.+.. +.+...++. .-+..||+|+.|++.+|. ++..+-..+ ...++.|++|.
T Consensus 170 en~ga~~~A~~~~~~~~leevr~~q-N~I~~eG~~al~eal~~~~~LevLdl~DNt-ft~egs~~LakaL~s~~~L~El~ 247 (382)
T KOG1909|consen 170 ENGGATALAEAFQSHPTLEEVRLSQ-NGIRPEGVTALAEALEHCPHLEVLDLRDNT-FTLEGSVALAKALSSWPHLRELN 247 (382)
T ss_pred ccccHHHHHHHHHhccccceEEEec-ccccCchhHHHHHHHHhCCcceeeecccch-hhhHHHHHHHHHhcccchheeec
Confidence 66554443 34567888888887 455544442 335577899999998876 444443333 33577888888
Q ss_pred ccCCCCCCHHHHH----HHHhcCCCCCEEEccCCCCChhhHHhcc----cCCCCCEEeeCCCCcc--CHHHHHHHHhcCc
Q 012207 387 MECCKLVSWEAFV----LIGQQCQYLEELDITENEVNDEGLKSIS----RCSKLSSLKLGICSNI--TDEGLKHVGSTCS 456 (468)
Q Consensus 387 l~~~~~~~~~~~~----~~~~~~~~L~~L~l~~~~~~~~~~~~l~----~~~~L~~L~l~~~~~l--~~~~~~~~~~~~~ 456 (468)
++.|. +...+.. .+.+..|+|+.|.+.+|.++..+...+. ..|.|+.|+|++| .+ .++++..+...++
T Consensus 248 l~dcl-l~~~Ga~a~~~al~~~~p~L~vl~l~gNeIt~da~~~la~~~~ek~dL~kLnLngN-~l~e~de~i~ei~~~~~ 325 (382)
T KOG1909|consen 248 LGDCL-LENEGAIAFVDALKESAPSLEVLELAGNEITRDAALALAACMAEKPDLEKLNLNGN-RLGEKDEGIDEIASKFD 325 (382)
T ss_pred ccccc-cccccHHHHHHHHhccCCCCceeccCcchhHHHHHHHHHHHHhcchhhHHhcCCcc-cccccchhHHHHHHhcc
Confidence 88886 4444433 3444678899999999888877655543 4678889999998 77 6667777766553
|
|
| >KOG0618 consensus Serine/threonine phosphatase 2C containing leucine-rich repeats, similar to SCN circadian oscillatory protein (SCOP) [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=99.47 E-value=8.6e-15 Score=138.24 Aligned_cols=223 Identities=19% Similarity=0.213 Sum_probs=106.1
Q ss_pred CCCCeeeecCCCCCChHHHHHHHhcCCCCCEEEccCCcccChhhHHHHHhcCCccceEeecCCCCCchhHHHHhhcCCCC
Q 012207 226 QYLEDLVLEGCHGIDDDGLASVEYSCKSLKALNLSKCQNISHVGLSSLIKGADYLQQLILAYSFWVSADLSKCLHNFPML 305 (468)
Q Consensus 226 ~~L~~L~l~~~~~~~~~~~~~l~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~L 305 (468)
.+|++++++. +.+.... +.+.. +++|+.+.+..+.. . .+..-....++|+.|...++. -..++..+..+..|
T Consensus 241 ~nl~~~dis~-n~l~~lp-~wi~~-~~nle~l~~n~N~l-~--~lp~ri~~~~~L~~l~~~~ne--l~yip~~le~~~sL 312 (1081)
T KOG0618|consen 241 LNLQYLDISH-NNLSNLP-EWIGA-CANLEALNANHNRL-V--ALPLRISRITSLVSLSAAYNE--LEYIPPFLEGLKSL 312 (1081)
T ss_pred ccceeeecch-hhhhcch-HHHHh-cccceEecccchhH-H--hhHHHHhhhhhHHHHHhhhhh--hhhCCCccccccee
Confidence 4666666666 3333333 44444 77777777766542 1 111112222344444433331 11223333445566
Q ss_pred CeeEecCCcCChhHH----------HHHH--------------HhCCCCCeEecccCCCCCHHHHHHHHHhCCCCCeEec
Q 012207 306 QSIKFEDCPVARSGI----------KAIG--------------NWHGSLKELSLSKCSGVTDEELSFVVQSHKELRKLDI 361 (468)
Q Consensus 306 ~~L~l~~~~~~~~~~----------~~l~--------------~~~~~L~~L~l~~~~~~~~~~l~~~~~~~~~L~~L~l 361 (468)
++|++..+.+.+... ..+. ...+.|+.|.+.+ +.+++..++. +.++++|+.|++
T Consensus 313 ~tLdL~~N~L~~lp~~~l~v~~~~l~~ln~s~n~l~~lp~~~e~~~~~Lq~Lylan-N~Ltd~c~p~-l~~~~hLKVLhL 390 (1081)
T KOG0618|consen 313 RTLDLQSNNLPSLPDNFLAVLNASLNTLNVSSNKLSTLPSYEENNHAALQELYLAN-NHLTDSCFPV-LVNFKHLKVLHL 390 (1081)
T ss_pred eeeeehhccccccchHHHhhhhHHHHHHhhhhccccccccccchhhHHHHHHHHhc-Ccccccchhh-hccccceeeeee
Confidence 666666554332110 0000 0122344445544 3455544333 345667777777
Q ss_pred CCCCCCCHHHHHHHHhcCCcCCeEEccCCCCCCHHHHHHHHhcCCCCCEEEccCCCCChhhHHhcccCCCCCEEeeCCCC
Q 012207 362 TCCRKITYASINSITKTCTSLTSLRMECCKLVSWEAFVLIGQQCQYLEELDITENEVNDEGLKSISRCSKLSSLKLGICS 441 (468)
Q Consensus 362 ~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~ 441 (468)
++|. +...+.. ...+++.|++|.++| +.++.-. ..++ .|+.|++|...+|++...+ .+.+++.|+.++++.|
T Consensus 391 syNr-L~~fpas-~~~kle~LeeL~LSG-NkL~~Lp-~tva-~~~~L~tL~ahsN~l~~fP--e~~~l~qL~~lDlS~N- 462 (1081)
T KOG0618|consen 391 SYNR-LNSFPAS-KLRKLEELEELNLSG-NKLTTLP-DTVA-NLGRLHTLRAHSNQLLSFP--ELAQLPQLKVLDLSCN- 462 (1081)
T ss_pred cccc-cccCCHH-HHhchHHhHHHhccc-chhhhhh-HHHH-hhhhhHHHhhcCCceeech--hhhhcCcceEEecccc-
Confidence 7763 2211111 123566777777776 3343222 1222 5566666666666555432 4555666666666666
Q ss_pred ccCHHHHHHHHhcCcccCeeecCCCC
Q 012207 442 NITDEGLKHVGSTCSMLKELDLYRFS 467 (468)
Q Consensus 442 ~l~~~~~~~~~~~~~~L~~L~l~~c~ 467 (468)
+++...+.... -.|+|+.|+++||.
T Consensus 463 ~L~~~~l~~~~-p~p~LkyLdlSGN~ 487 (1081)
T KOG0618|consen 463 NLSEVTLPEAL-PSPNLKYLDLSGNT 487 (1081)
T ss_pred hhhhhhhhhhC-CCcccceeeccCCc
Confidence 66554444332 22566666666664
|
|
| >KOG1909 consensus Ran GTPase-activating protein [RNA processing and modification; Nuclear structure; Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=99.41 E-value=3e-12 Score=108.14 Aligned_cols=190 Identities=18% Similarity=0.251 Sum_probs=134.1
Q ss_pred HhcCCccceEeecCCCCCc---hhHHHHhhcCCCCCeeEecCCcCChhHHHHHHH------------hCCCCCeEecccC
Q 012207 274 IKGADYLQQLILAYSFWVS---ADLSKCLHNFPMLQSIKFEDCPVARSGIKAIGN------------WHGSLKELSLSKC 338 (468)
Q Consensus 274 ~~~~~~L~~L~l~~~~~~~---~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~l~~------------~~~~L~~L~l~~~ 338 (468)
+..+|.|+.++++.+..-. ..+-..+.++..|++|.+.+|.+...+-..++. .-++|+.+...++
T Consensus 88 L~~~~~L~~ldLSDNA~G~~g~~~l~~ll~s~~~L~eL~L~N~Glg~~ag~~l~~al~~l~~~kk~~~~~~Lrv~i~~rN 167 (382)
T KOG1909|consen 88 LLGCPKLQKLDLSDNAFGPKGIRGLEELLSSCTDLEELYLNNCGLGPEAGGRLGRALFELAVNKKAASKPKLRVFICGRN 167 (382)
T ss_pred HhcCCceeEeeccccccCccchHHHHHHHHhccCHHHHhhhcCCCChhHHHHHHHHHHHHHHHhccCCCcceEEEEeecc
Confidence 4567899999999873322 233445668889999999999877665444332 3468888888773
Q ss_pred CCCCHHH---HHHHHHhCCCCCeEecCCCCCCCHHHH---HHHHhcCCcCCeEEccCCCCCCHHHHHHHHh---cCCCCC
Q 012207 339 SGVTDEE---LSFVVQSHKELRKLDITCCRKITYASI---NSITKTCTSLTSLRMECCKLVSWEAFVLIGQ---QCQYLE 409 (468)
Q Consensus 339 ~~~~~~~---l~~~~~~~~~L~~L~l~~~~~~~~~~~---~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~---~~~~L~ 409 (468)
.+.+.+ +...++.+|.|+.+.+..+. +...++ ..-+.+|+.|+.|++.. +.++..+-..+++ .+++|+
T Consensus 168 -rlen~ga~~~A~~~~~~~~leevr~~qN~-I~~eG~~al~eal~~~~~LevLdl~D-Ntft~egs~~LakaL~s~~~L~ 244 (382)
T KOG1909|consen 168 -RLENGGATALAEAFQSHPTLEEVRLSQNG-IRPEGVTALAEALEHCPHLEVLDLRD-NTFTLEGSVALAKALSSWPHLR 244 (382)
T ss_pred -ccccccHHHHHHHHHhccccceEEEeccc-ccCchhHHHHHHHHhCCcceeeeccc-chhhhHHHHHHHHHhcccchhe
Confidence 443333 44556677899999998876 443333 33345789999999987 4466655444443 567889
Q ss_pred EEEccCCCCChhhHHhcc-----cCCCCCEEeeCCCCccCHHHHHHHH---hcCcccCeeecCCCC
Q 012207 410 ELDITENEVNDEGLKSIS-----RCSKLSSLKLGICSNITDEGLKHVG---STCSMLKELDLYRFS 467 (468)
Q Consensus 410 ~L~l~~~~~~~~~~~~l~-----~~~~L~~L~l~~~~~l~~~~~~~~~---~~~~~L~~L~l~~c~ 467 (468)
.|++++|.+...+...+. ..|+|+.|.+.+| .|+..+...+. ...|.|+.|+|.+|.
T Consensus 245 El~l~dcll~~~Ga~a~~~al~~~~p~L~vl~l~gN-eIt~da~~~la~~~~ek~dL~kLnLngN~ 309 (382)
T KOG1909|consen 245 ELNLGDCLLENEGAIAFVDALKESAPSLEVLELAGN-EITRDAALALAACMAEKPDLEKLNLNGNR 309 (382)
T ss_pred eecccccccccccHHHHHHHHhccCCCCceeccCcc-hhHHHHHHHHHHHHhcchhhHHhcCCccc
Confidence 999999999888777654 3789999999999 88776554333 357899999999985
|
|
| >KOG0472 consensus Leucine-rich repeat protein [Function unknown] | Back alignment and domain information |
|---|
Probab=99.38 E-value=4.4e-15 Score=127.19 Aligned_cols=111 Identities=14% Similarity=0.146 Sum_probs=72.3
Q ss_pred HHHhCCCCCeEecCCCCCCCHHHHHHHHhcCCcCCeEEccCCCCCCHHHHHHHHhcCCCCCEEEccCCCCChhhHHhccc
Q 012207 349 VVQSHKELRKLDITCCRKITYASINSITKTCTSLTSLRMECCKLVSWEAFVLIGQQCQYLEELDITENEVNDEGLKSISR 428 (468)
Q Consensus 349 ~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~ 428 (468)
.+..+++|..|++++|. +.+.+.. .+.+..|+.|+++... + ..++.+......|+.+-.++|++.......+..
T Consensus 430 ~l~~l~kLt~L~L~NN~-Ln~LP~e--~~~lv~Lq~LnlS~Nr-F--r~lP~~~y~lq~lEtllas~nqi~~vd~~~l~n 503 (565)
T KOG0472|consen 430 ELSQLQKLTFLDLSNNL-LNDLPEE--MGSLVRLQTLNLSFNR-F--RMLPECLYELQTLETLLASNNQIGSVDPSGLKN 503 (565)
T ss_pred HHHhhhcceeeecccch-hhhcchh--hhhhhhhheecccccc-c--ccchHHHhhHHHHHHHHhccccccccChHHhhh
Confidence 34456777777777654 3332222 2345667777777632 1 112222212233555555567777777777888
Q ss_pred CCCCCEEeeCCCCccCHHHHHHHHhcCcccCeeecCCCCC
Q 012207 429 CSKLSSLKLGICSNITDEGLKHVGSTCSMLKELDLYRFSS 468 (468)
Q Consensus 429 ~~~L~~L~l~~~~~l~~~~~~~~~~~~~~L~~L~l~~c~~ 468 (468)
+.+|.+|++.+| .+. .++...++|.+|++|++.||++
T Consensus 504 m~nL~tLDL~nN-dlq--~IPp~LgnmtnL~hLeL~gNpf 540 (565)
T KOG0472|consen 504 MRNLTTLDLQNN-DLQ--QIPPILGNMTNLRHLELDGNPF 540 (565)
T ss_pred hhhcceeccCCC-chh--hCChhhccccceeEEEecCCcc
Confidence 999999999999 655 4778888999999999999985
|
|
| >KOG3207 consensus Beta-tubulin folding cofactor E [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=99.38 E-value=1.8e-13 Score=118.83 Aligned_cols=212 Identities=17% Similarity=0.194 Sum_probs=129.0
Q ss_pred cCCCCCeeeecCCCCCChHHHHHHHhcCCCCCEEEccCCcccChhhHHHHHhcCCccceEeecCCCCCchhHHHHhhcCC
Q 012207 224 KLQYLEDLVLEGCHGIDDDGLASVEYSCKSLKALNLSKCQNISHVGLSSLIKGADYLQQLILAYSFWVSADLSKCLHNFP 303 (468)
Q Consensus 224 ~~~~L~~L~l~~~~~~~~~~~~~l~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~l~~~~ 303 (468)
++.+|+++.+.++ .+...+.......|++++.|+++.+-......+..++..+|+|+.|.++.+..........-..++
T Consensus 119 n~kkL~~IsLdn~-~V~~~~~~~~~k~~~~v~~LdLS~NL~~nw~~v~~i~eqLp~Le~LNls~Nrl~~~~~s~~~~~l~ 197 (505)
T KOG3207|consen 119 NLKKLREISLDNY-RVEDAGIEEYSKILPNVRDLDLSRNLFHNWFPVLKIAEQLPSLENLNLSSNRLSNFISSNTTLLLS 197 (505)
T ss_pred hHHhhhheeecCc-cccccchhhhhhhCCcceeecchhhhHHhHHHHHHHHHhcccchhcccccccccCCccccchhhhh
Confidence 5788888888874 344444435566689999999998776666677788888888888888876433221111122556
Q ss_pred CCCeeEecCCcCChhHHHHHHHhCCCCCeEecccCCCCCHHHHHHHHHhCCCCCeEecCCCCCCCHHHHHHHHhcCCcCC
Q 012207 304 MLQSIKFEDCPVARSGIKAIGNWHGSLKELSLSKCSGVTDEELSFVVQSHKELRKLDITCCRKITYASINSITKTCTSLT 383 (468)
Q Consensus 304 ~L~~L~l~~~~~~~~~~~~l~~~~~~L~~L~l~~~~~~~~~~l~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~ 383 (468)
.|+.|.+++|.++......+...+|+|+.|++..+..+..... -...+..|++|+|+++..++..... ....+|.|+
T Consensus 198 ~lK~L~l~~CGls~k~V~~~~~~fPsl~~L~L~~N~~~~~~~~--~~~i~~~L~~LdLs~N~li~~~~~~-~~~~l~~L~ 274 (505)
T KOG3207|consen 198 HLKQLVLNSCGLSWKDVQWILLTFPSLEVLYLEANEIILIKAT--STKILQTLQELDLSNNNLIDFDQGY-KVGTLPGLN 274 (505)
T ss_pred hhheEEeccCCCCHHHHHHHHHhCCcHHHhhhhcccccceecc--hhhhhhHHhhccccCCccccccccc-ccccccchh
Confidence 7777778887777777777766777888877776432221111 1122356777777777654433222 223677777
Q ss_pred eEEccCCCCCCHHH-----HHHHHhcCCCCCEEEccCCCCCh-hhHHhcccCCCCCEEeeCCC
Q 012207 384 SLRMECCKLVSWEA-----FVLIGQQCQYLEELDITENEVND-EGLKSISRCSKLSSLKLGIC 440 (468)
Q Consensus 384 ~L~l~~~~~~~~~~-----~~~~~~~~~~L~~L~l~~~~~~~-~~~~~l~~~~~L~~L~l~~~ 440 (468)
.|+++.|. +++-. .......+++|+.|++..|.+.+ ..+..+..+++|+.|.+..+
T Consensus 275 ~Lnls~tg-i~si~~~d~~s~~kt~~f~kL~~L~i~~N~I~~w~sl~~l~~l~nlk~l~~~~n 336 (505)
T KOG3207|consen 275 QLNLSSTG-IASIAEPDVESLDKTHTFPKLEYLNISENNIRDWRSLNHLRTLENLKHLRITLN 336 (505)
T ss_pred hhhccccC-cchhcCCCccchhhhcccccceeeecccCccccccccchhhccchhhhhhcccc
Confidence 77776643 33211 11122256777777777776644 12233444566666666555
|
|
| >KOG0618 consensus Serine/threonine phosphatase 2C containing leucine-rich repeats, similar to SCN circadian oscillatory protein (SCOP) [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=99.34 E-value=3.8e-14 Score=134.03 Aligned_cols=80 Identities=30% Similarity=0.299 Sum_probs=43.3
Q ss_pred CCcEEecCCCCCCChhHHHhhhcccccCCccEEecCCCCcccHHHHHHhhhcCCCCcEEEccCCCccCHHHHHHHHcCCC
Q 012207 72 FITQLDLSLCPRANDDALSIVSSSSWKLTLRSINLSRSRLFTKVGLSSLTVNCRFLTEIDLSNGTEMGDAAAAAIAEAKN 151 (468)
Q Consensus 72 ~l~~l~l~~~~~~~~~~~~~l~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~ 151 (468)
.|+.|++++.. ..+... ......+|+.|.++.+. +. . ++.-...+.+|+.+.|..+. .... ...+..+.+
T Consensus 46 ~L~~l~lsnn~-~~~fp~----~it~l~~L~~ln~s~n~-i~-~-vp~s~~~~~~l~~lnL~~n~-l~~l-P~~~~~lkn 115 (1081)
T KOG0618|consen 46 KLKSLDLSNNQ-ISSFPI----QITLLSHLRQLNLSRNY-IR-S-VPSSCSNMRNLQYLNLKNNR-LQSL-PASISELKN 115 (1081)
T ss_pred eeEEeeccccc-cccCCc----hhhhHHHHhhcccchhh-Hh-h-Cchhhhhhhcchhheeccch-hhcC-chhHHhhhc
Confidence 37788877653 222111 11234667777776542 11 1 11222267777888877652 2222 245667777
Q ss_pred CCeEeccCCc
Q 012207 152 LERLWLARCK 161 (468)
Q Consensus 152 L~~L~l~~~~ 161 (468)
|++|+++++.
T Consensus 116 l~~LdlS~N~ 125 (1081)
T KOG0618|consen 116 LQYLDLSFNH 125 (1081)
T ss_pred ccccccchhc
Confidence 8888887754
|
|
| >KOG3207 consensus Beta-tubulin folding cofactor E [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=99.30 E-value=6.4e-13 Score=115.42 Aligned_cols=215 Identities=20% Similarity=0.193 Sum_probs=147.2
Q ss_pred hCCCccEeeecccCCCCCCcc-ccccCCCCCeeeecCCCCCChHHHHHHHhcCCCCCEEEccCCcccChhhHHHHHhcCC
Q 012207 200 KCQEIRTLDLSYLPITEKCLP-PVVKLQYLEDLVLEGCHGIDDDGLASVEYSCKSLKALNLSKCQNISHVGLSSLIKGAD 278 (468)
Q Consensus 200 ~~~~L~~L~l~~~~~~~~~~~-~l~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~ 278 (468)
+..+|+.+.+.++.+...... ....+++++.|+++.+-.-.-..+..++..+|+|+.|+++.+......+ ......++
T Consensus 119 n~kkL~~IsLdn~~V~~~~~~~~~k~~~~v~~LdLS~NL~~nw~~v~~i~eqLp~Le~LNls~Nrl~~~~~-s~~~~~l~ 197 (505)
T KOG3207|consen 119 NLKKLREISLDNYRVEDAGIEEYSKILPNVRDLDLSRNLFHNWFPVLKIAEQLPSLENLNLSSNRLSNFIS-SNTTLLLS 197 (505)
T ss_pred hHHhhhheeecCccccccchhhhhhhCCcceeecchhhhHHhHHHHHHHHHhcccchhcccccccccCCcc-ccchhhhh
Confidence 667888889988866654442 3446999999999984333334555677779999999999876332211 11122568
Q ss_pred ccceEeecCCCCCchhHHHHhhcCCCCCeeEecCCc-CChh-HHHHHHHhCCCCCeEecccCCCCCHHHHHHHHHhCCCC
Q 012207 279 YLQQLILAYSFWVSADLSKCLHNFPMLQSIKFEDCP-VARS-GIKAIGNWHGSLKELSLSKCSGVTDEELSFVVQSHKEL 356 (468)
Q Consensus 279 ~L~~L~l~~~~~~~~~~~~~l~~~~~L~~L~l~~~~-~~~~-~~~~l~~~~~~L~~L~l~~~~~~~~~~l~~~~~~~~~L 356 (468)
+|+.|.++.|..--.++...+..+|+|+.|.+.+|. +... .... .+..|++|+|++++.++...+ .....+|.|
T Consensus 198 ~lK~L~l~~CGls~k~V~~~~~~fPsl~~L~L~~N~~~~~~~~~~~---i~~~L~~LdLs~N~li~~~~~-~~~~~l~~L 273 (505)
T KOG3207|consen 198 HLKQLVLNSCGLSWKDVQWILLTFPSLEVLYLEANEIILIKATSTK---ILQTLQELDLSNNNLIDFDQG-YKVGTLPGL 273 (505)
T ss_pred hhheEEeccCCCCHHHHHHHHHhCCcHHHhhhhcccccceecchhh---hhhHHhhccccCCcccccccc-cccccccch
Confidence 899999999965555666667799999999999984 2221 2222 346899999999766654433 335578999
Q ss_pred CeEecCCCCCCCHHHHH-----HHHhcCCcCCeEEccCCCCCCHHHHHHHHhcCCCCCEEEccCCCCChh
Q 012207 357 RKLDITCCRKITYASIN-----SITKTCTSLTSLRMECCKLVSWEAFVLIGQQCQYLEELDITENEVNDE 421 (468)
Q Consensus 357 ~~L~l~~~~~~~~~~~~-----~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~ 421 (468)
+-|+++.|. +++.... .....+++|+.|++...+-.....+..+. .+++|+.|.+..|.++.+
T Consensus 274 ~~Lnls~tg-i~si~~~d~~s~~kt~~f~kL~~L~i~~N~I~~w~sl~~l~-~l~nlk~l~~~~n~ln~e 341 (505)
T KOG3207|consen 274 NQLNLSSTG-IASIAEPDVESLDKTHTFPKLEYLNISENNIRDWRSLNHLR-TLENLKHLRITLNYLNKE 341 (505)
T ss_pred hhhhccccC-cchhcCCCccchhhhcccccceeeecccCccccccccchhh-ccchhhhhhccccccccc
Confidence 999998775 4443322 22346899999999985433344555555 778899998888766543
|
|
| >KOG4237 consensus Extracellular matrix protein slit, contains leucine-rich and EGF-like repeats [Extracellular structures; Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=99.20 E-value=1.7e-12 Score=111.40 Aligned_cols=131 Identities=18% Similarity=0.135 Sum_probs=74.5
Q ss_pred CCcEEeccCCCCCChHHHHHHHhhCCCccEeeecccCCCCCCccccccCCCCCeeeecCCCCCChHHHHHHHhcCCCCCE
Q 012207 177 KLKLLCLKWCIRVTDLGVELVALKCQEIRTLDLSYLPITEKCLPPVVKLQYLEDLVLEGCHGIDDDGLASVEYSCKSLKA 256 (468)
Q Consensus 177 ~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~~L~~ 256 (468)
.-..+.+..+ .++..+... +...++|+.|+++.|.|+......+..+++|..|.+.+++.|.+..-..+.. +..++.
T Consensus 68 ~tveirLdqN-~I~~iP~~a-F~~l~~LRrLdLS~N~Is~I~p~AF~GL~~l~~Lvlyg~NkI~~l~k~~F~g-L~slqr 144 (498)
T KOG4237|consen 68 ETVEIRLDQN-QISSIPPGA-FKTLHRLRRLDLSKNNISFIAPDAFKGLASLLSLVLYGNNKITDLPKGAFGG-LSSLQR 144 (498)
T ss_pred cceEEEeccC-CcccCChhh-ccchhhhceecccccchhhcChHhhhhhHhhhHHHhhcCCchhhhhhhHhhh-HHHHHH
Confidence 4556666654 444444333 3467788888888887777777777777777777777766777665555554 666666
Q ss_pred EEccCCcccChhhHHHHHhcCCccceEeecCCCCCchhHHH-HhhcCCCCCeeEecCCc
Q 012207 257 LNLSKCQNISHVGLSSLIKGADYLQQLILAYSFWVSADLSK-CLHNFPMLQSIKFEDCP 314 (468)
Q Consensus 257 L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~-~l~~~~~L~~L~l~~~~ 314 (468)
|.+.-+.. .. ..+..+..++++..|.+..+. ...+.. .+..+..++.+.+..++
T Consensus 145 LllNan~i-~C-ir~~al~dL~~l~lLslyDn~--~q~i~~~tf~~l~~i~tlhlA~np 199 (498)
T KOG4237|consen 145 LLLNANHI-NC-IRQDALRDLPSLSLLSLYDNK--IQSICKGTFQGLAAIKTLHLAQNP 199 (498)
T ss_pred HhcChhhh-cc-hhHHHHHHhhhcchhcccchh--hhhhccccccchhccchHhhhcCc
Confidence 66554331 11 122334455666666554431 111111 34445566666665544
|
|
| >KOG4237 consensus Extracellular matrix protein slit, contains leucine-rich and EGF-like repeats [Extracellular structures; Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=99.13 E-value=3.7e-12 Score=109.34 Aligned_cols=90 Identities=18% Similarity=0.154 Sum_probs=55.2
Q ss_pred HHhCCCCCeEecCCCCCCCHHHHHHHHhcCCcCCeEEccCCCCCCHHHHHHHHhcCCCCCEEEccCCCCChhhHHhcccC
Q 012207 350 VQSHKELRKLDITCCRKITYASINSITKTCTSLTSLRMECCKLVSWEAFVLIGQQCQYLEELDITENEVNDEGLKSISRC 429 (468)
Q Consensus 350 ~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~ 429 (468)
++.+|+|++|++++|. ++...-..+ .....+++|.+.. +.+....- .+++.+..|+.|++.+|+|+...+..+...
T Consensus 270 f~~L~~L~~lnlsnN~-i~~i~~~aF-e~~a~l~eL~L~~-N~l~~v~~-~~f~~ls~L~tL~L~~N~it~~~~~aF~~~ 345 (498)
T KOG4237|consen 270 FKKLPNLRKLNLSNNK-ITRIEDGAF-EGAAELQELYLTR-NKLEFVSS-GMFQGLSGLKTLSLYDNQITTVAPGAFQTL 345 (498)
T ss_pred HhhcccceEeccCCCc-cchhhhhhh-cchhhhhhhhcCc-chHHHHHH-HhhhccccceeeeecCCeeEEEeccccccc
Confidence 5667777777777664 443332222 3556677777765 33332222 233367778888888888777776777777
Q ss_pred CCCCEEeeCCCCcc
Q 012207 430 SKLSSLKLGICSNI 443 (468)
Q Consensus 430 ~~L~~L~l~~~~~l 443 (468)
..|.+|++-.|+--
T Consensus 346 ~~l~~l~l~~Np~~ 359 (498)
T KOG4237|consen 346 FSLSTLNLLSNPFN 359 (498)
T ss_pred ceeeeeehccCccc
Confidence 77777777665433
|
|
| >PRK15387 E3 ubiquitin-protein ligase SspH2; Provisional | Back alignment and domain information |
|---|
Probab=99.06 E-value=2.3e-10 Score=111.34 Aligned_cols=263 Identities=17% Similarity=0.129 Sum_probs=124.4
Q ss_pred CCcEEEccCCCccCHHHHHHHHcCCCCCeEeccCCcccChHhHHHHHhcCCCCcEEeccCCCCCChHHHHHHHhhCCCcc
Q 012207 126 FLTEIDLSNGTEMGDAAAAAIAEAKNLERLWLARCKLITDLGIGRIAACCRKLKLLCLKWCIRVTDLGVELVALKCQEIR 205 (468)
Q Consensus 126 ~L~~L~l~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~ 205 (468)
+-..|+++++ .++..+ ..+. ++|+.|.+..+. ++. +....++|++|+++++ .++..+. ..++|+
T Consensus 202 ~~~~LdLs~~-~LtsLP-~~l~--~~L~~L~L~~N~-Lt~-----LP~lp~~Lk~LdLs~N-~LtsLP~-----lp~sL~ 265 (788)
T PRK15387 202 GNAVLNVGES-GLTTLP-DCLP--AHITTLVIPDNN-LTS-----LPALPPELRTLEVSGN-QLTSLPV-----LPPGLL 265 (788)
T ss_pred CCcEEEcCCC-CCCcCC-cchh--cCCCEEEccCCc-CCC-----CCCCCCCCcEEEecCC-ccCcccC-----cccccc
Confidence 3455565555 333222 1121 356666665532 221 1112456666666654 3332211 234566
Q ss_pred EeeecccCCCCCCccccccCCCCCeeeecCCCCCChHHHHHHHhcCCCCCEEEccCCcccChhhHHHHHhcCCccceEee
Q 012207 206 TLDLSYLPITEKCLPPVVKLQYLEDLVLEGCHGIDDDGLASVEYSCKSLKALNLSKCQNISHVGLSSLIKGADYLQQLIL 285 (468)
Q Consensus 206 ~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l 285 (468)
.|++.+|.+.. +.. ...+|+.|+++++ .+.... ...++|+.|+++++.... +. ....+|+.|.+
T Consensus 266 ~L~Ls~N~L~~--Lp~--lp~~L~~L~Ls~N-~Lt~LP-----~~p~~L~~LdLS~N~L~~---Lp---~lp~~L~~L~L 329 (788)
T PRK15387 266 ELSIFSNPLTH--LPA--LPSGLCKLWIFGN-QLTSLP-----VLPPGLQELSVSDNQLAS---LP---ALPSELCKLWA 329 (788)
T ss_pred eeeccCCchhh--hhh--chhhcCEEECcCC-cccccc-----ccccccceeECCCCcccc---CC---CCccccccccc
Confidence 66666554431 111 1245556666553 333211 113556666666654211 00 11234555555
Q ss_pred cCCCCCchhHHHHhhcCCCCCeeEecCCcCChhHHHHHHHhCCCCCeEecccCCCCCHHHHHHHHHhCCCCCeEecCCCC
Q 012207 286 AYSFWVSADLSKCLHNFPMLQSIKFEDCPVARSGIKAIGNWHGSLKELSLSKCSGVTDEELSFVVQSHKELRKLDITCCR 365 (468)
Q Consensus 286 ~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~l~~~~~~L~~L~l~~~~~~~~~~l~~~~~~~~~L~~L~l~~~~ 365 (468)
+++. +.. ++. -.++|+.|++++|.+.... . ..++|+.|+++++ .++. ++. ..++|+.|++++|.
T Consensus 330 s~N~-L~~-LP~---lp~~Lq~LdLS~N~Ls~LP--~---lp~~L~~L~Ls~N-~L~~--LP~---l~~~L~~LdLs~N~ 393 (788)
T PRK15387 330 YNNQ-LTS-LPT---LPSGLQELSVSDNQLASLP--T---LPSELYKLWAYNN-RLTS--LPA---LPSGLKELIVSGNR 393 (788)
T ss_pred ccCc-ccc-ccc---cccccceEecCCCccCCCC--C---CCcccceehhhcc-cccc--Ccc---cccccceEEecCCc
Confidence 5542 111 110 1135677777776655311 1 1245666666652 3331 222 12467777777664
Q ss_pred CCCHHHHHHHHhcCCcCCeEEccCCCCCCHHHHHHHHhcCCCCCEEEccCCCCChhhHHhcccCCCCCEEeeCCCCccCH
Q 012207 366 KITYASINSITKTCTSLTSLRMECCKLVSWEAFVLIGQQCQYLEELDITENEVNDEGLKSISRCSKLSSLKLGICSNITD 445 (468)
Q Consensus 366 ~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~l~~ 445 (468)
++.. . ...++|+.|+++++. ++. ++. ...+|+.|++++|.++.. +..+.++++|+.|++++| .++.
T Consensus 394 -Lt~L--P---~l~s~L~~LdLS~N~-Lss--IP~---l~~~L~~L~Ls~NqLt~L-P~sl~~L~~L~~LdLs~N-~Ls~ 459 (788)
T PRK15387 394 -LTSL--P---VLPSELKELMVSGNR-LTS--LPM---LPSGLLSLSVYRNQLTRL-PESLIHLSSETTVNLEGN-PLSE 459 (788)
T ss_pred -ccCC--C---CcccCCCEEEccCCc-CCC--CCc---chhhhhhhhhccCccccc-ChHHhhccCCCeEECCCC-CCCc
Confidence 3311 1 123567777777643 331 211 124566777777777643 344566777777777777 6665
Q ss_pred HHHHH
Q 012207 446 EGLKH 450 (468)
Q Consensus 446 ~~~~~ 450 (468)
..+..
T Consensus 460 ~~~~~ 464 (788)
T PRK15387 460 RTLQA 464 (788)
T ss_pred hHHHH
Confidence 44443
|
|
| >KOG0472 consensus Leucine-rich repeat protein [Function unknown] | Back alignment and domain information |
|---|
Probab=99.04 E-value=7.1e-12 Score=107.89 Aligned_cols=109 Identities=17% Similarity=0.150 Sum_probs=72.4
Q ss_pred hCCCCCeEecccCCCCCHHHHHHHHHhCCCCCeEecCCCCCCCHHHHHHHHhcCCcCCeEEccCCCCCCHHHHHHHHhcC
Q 012207 326 WHGSLKELSLSKCSGVTDEELSFVVQSHKELRKLDITCCRKITYASINSITKTCTSLTSLRMECCKLVSWEAFVLIGQQC 405 (468)
Q Consensus 326 ~~~~L~~L~l~~~~~~~~~~l~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~ 405 (468)
.+++|..|++++ +.+.+ ++.-.+....|+.|++++|. +. .++........++.+-.+. ..+.......+. ++
T Consensus 433 ~l~kLt~L~L~N-N~Ln~--LP~e~~~lv~Lq~LnlS~Nr-Fr--~lP~~~y~lq~lEtllas~-nqi~~vd~~~l~-nm 504 (565)
T KOG0472|consen 433 QLQKLTFLDLSN-NLLND--LPEEMGSLVRLQTLNLSFNR-FR--MLPECLYELQTLETLLASN-NQIGSVDPSGLK-NM 504 (565)
T ss_pred hhhcceeeeccc-chhhh--cchhhhhhhhhheecccccc-cc--cchHHHhhHHHHHHHHhcc-ccccccChHHhh-hh
Confidence 678999999987 34432 44445566779999999874 22 1222322334455554443 334332233333 77
Q ss_pred CCCCEEEccCCCCChhhHHhcccCCCCCEEeeCCCCccC
Q 012207 406 QYLEELDITENEVNDEGLKSISRCSKLSSLKLGICSNIT 444 (468)
Q Consensus 406 ~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~l~ 444 (468)
.+|..||+.+|.+...+ ..++++.+|++|.++|| .+.
T Consensus 505 ~nL~tLDL~nNdlq~IP-p~LgnmtnL~hLeL~gN-pfr 541 (565)
T KOG0472|consen 505 RNLTTLDLQNNDLQQIP-PILGNMTNLRHLELDGN-PFR 541 (565)
T ss_pred hhcceeccCCCchhhCC-hhhccccceeEEEecCC-ccC
Confidence 89999999999887754 67889999999999999 554
|
|
| >PF12937 F-box-like: F-box-like; PDB: 1P22_A 2OVP_B 2OVR_B 2OVQ_B 1FS1_A 1FS2_C 1FQV_I 1LDK_E 2AST_B 2ASS_B | Back alignment and domain information |
|---|
Probab=99.04 E-value=1.1e-10 Score=70.93 Aligned_cols=38 Identities=26% Similarity=0.496 Sum_probs=33.3
Q ss_pred cccCcHHHHHHHHhhhcCChhhhhHHhhhhhhHHHHHHhh
Q 012207 12 FDFLSEEIIFNILDHLNNDPFARKSFSLTCRNFYSIESRH 51 (468)
Q Consensus 12 ~~~LP~eil~~I~~~~l~~~~~~~~~~~v~~~w~~~~~~~ 51 (468)
|..||+||+.+||+ |++ ..|+.++++|||+|++++...
T Consensus 1 i~~LP~Eil~~If~-~L~-~~dl~~~~~vcr~w~~~~~~~ 38 (47)
T PF12937_consen 1 ISSLPDEILLEIFS-YLD-PRDLLRLSLVCRRWRRIANDN 38 (47)
T ss_dssp CCCS-HHHHHHHHT-TS--HHHHHHHTTSSHHHHHHHTCC
T ss_pred ChHhHHHHHHHHHh-cCC-HHHHHHHHHHHHHHHHHHCCh
Confidence 57899999999999 996 999999999999999998654
|
|
| >PRK15387 E3 ubiquitin-protein ligase SspH2; Provisional | Back alignment and domain information |
|---|
Probab=99.03 E-value=1.7e-10 Score=112.32 Aligned_cols=235 Identities=20% Similarity=0.082 Sum_probs=121.5
Q ss_pred CCCcEEeccCCCCCChHHHHHHHhhCCCccEeeecccCCCCCCccccccCCCCCeeeecCCCCCChHHHHHHHhcCCCCC
Q 012207 176 RKLKLLCLKWCIRVTDLGVELVALKCQEIRTLDLSYLPITEKCLPPVVKLQYLEDLVLEGCHGIDDDGLASVEYSCKSLK 255 (468)
Q Consensus 176 ~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~~L~ 255 (468)
++|+.|.+.++ .++..+ ...++|++|++++|.++.. .. ..++|++|++.++ .+.. +.....+|+
T Consensus 222 ~~L~~L~L~~N-~Lt~LP-----~lp~~Lk~LdLs~N~LtsL--P~--lp~sL~~L~Ls~N-~L~~-----Lp~lp~~L~ 285 (788)
T PRK15387 222 AHITTLVIPDN-NLTSLP-----ALPPELRTLEVSGNQLTSL--PV--LPPGLLELSIFSN-PLTH-----LPALPSGLC 285 (788)
T ss_pred cCCCEEEccCC-cCCCCC-----CCCCCCcEEEecCCccCcc--cC--cccccceeeccCC-chhh-----hhhchhhcC
Confidence 36677777664 343322 1346777777777755521 11 1356777777663 2322 112235677
Q ss_pred EEEccCCcccChhhHHHHHhcCCccceEeecCCCCCchhHHHHhhcCCCCCeeEecCCcCChhHHHHHHHhCCCCCeEec
Q 012207 256 ALNLSKCQNISHVGLSSLIKGADYLQQLILAYSFWVSADLSKCLHNFPMLQSIKFEDCPVARSGIKAIGNWHGSLKELSL 335 (468)
Q Consensus 256 ~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~l~~~~~~L~~L~l 335 (468)
.|++.++.. .. +....++|+.|+++++. +.. ++. ...+|+.|++.+|.++... . ...+|+.|++
T Consensus 286 ~L~Ls~N~L-t~-----LP~~p~~L~~LdLS~N~-L~~-Lp~---lp~~L~~L~Ls~N~L~~LP--~---lp~~Lq~LdL 349 (788)
T PRK15387 286 KLWIFGNQL-TS-----LPVLPPGLQELSVSDNQ-LAS-LPA---LPSELCKLWAYNNQLTSLP--T---LPSGLQELSV 349 (788)
T ss_pred EEECcCCcc-cc-----ccccccccceeECCCCc-ccc-CCC---CcccccccccccCcccccc--c---cccccceEec
Confidence 777766542 21 11223567777776652 221 111 1235666777776654311 1 1246777777
Q ss_pred ccCCCCCHHHHHHHHHhCCCCCeEecCCCCCCCHHHHHHHHhcCCcCCeEEccCCCCCCHHHHHHHHhcCCCCCEEEccC
Q 012207 336 SKCSGVTDEELSFVVQSHKELRKLDITCCRKITYASINSITKTCTSLTSLRMECCKLVSWEAFVLIGQQCQYLEELDITE 415 (468)
Q Consensus 336 ~~~~~~~~~~l~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~ 415 (468)
+++ .++. ++. ..++|+.|++++|. +.. +.. ...+|+.|+++++. ++. ++. ..++|+.|++++
T Consensus 350 S~N-~Ls~--LP~---lp~~L~~L~Ls~N~-L~~--LP~---l~~~L~~LdLs~N~-Lt~--LP~---l~s~L~~LdLS~ 411 (788)
T PRK15387 350 SDN-QLAS--LPT---LPSELYKLWAYNNR-LTS--LPA---LPSGLKELIVSGNR-LTS--LPV---LPSELKELMVSG 411 (788)
T ss_pred CCC-ccCC--CCC---CCcccceehhhccc-ccc--Ccc---cccccceEEecCCc-ccC--CCC---cccCCCEEEccC
Confidence 763 4432 221 12466667766654 331 111 23467777776643 331 111 235677777777
Q ss_pred CCCChhhHHhcccCCCCCEEeeCCCCccCHHHHHHHHhcCcccCeeecCCCC
Q 012207 416 NEVNDEGLKSISRCSKLSSLKLGICSNITDEGLKHVGSTCSMLKELDLYRFS 467 (468)
Q Consensus 416 ~~~~~~~~~~l~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~~L~~L~l~~c~ 467 (468)
|.++... . ...+|+.|++++| +++. ++.-...+++|+.|++++|+
T Consensus 412 N~LssIP-~---l~~~L~~L~Ls~N-qLt~--LP~sl~~L~~L~~LdLs~N~ 456 (788)
T PRK15387 412 NRLTSLP-M---LPSGLLSLSVYRN-QLTR--LPESLIHLSSETTVNLEGNP 456 (788)
T ss_pred CcCCCCC-c---chhhhhhhhhccC-cccc--cChHHhhccCCCeEECCCCC
Confidence 7665432 1 1235667777777 6663 44334467777777777775
|
|
| >KOG3665 consensus ZYG-1-like serine/threonine protein kinases [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.94 E-value=1.8e-09 Score=104.75 Aligned_cols=152 Identities=22% Similarity=0.254 Sum_probs=72.3
Q ss_pred CCCeeEecCCc-CChhHHHHHHHhCCCCCeEecccCCCCCHHHHHHHHHhCCCCCeEecCCCCCCCHHHHHHHHhcCCcC
Q 012207 304 MLQSIKFEDCP-VARSGIKAIGNWHGSLKELSLSKCSGVTDEELSFVVQSHKELRKLDITCCRKITYASINSITKTCTSL 382 (468)
Q Consensus 304 ~L~~L~l~~~~-~~~~~~~~l~~~~~~L~~L~l~~~~~~~~~~l~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L 382 (468)
+|++|+++|.. +....+..++..+|.|++|.+++. .+..+.+..+..++|+|..|+|+++. +++. ...+++++|
T Consensus 123 nL~~LdI~G~~~~s~~W~~kig~~LPsL~sL~i~~~-~~~~~dF~~lc~sFpNL~sLDIS~Tn-I~nl---~GIS~LknL 197 (699)
T KOG3665|consen 123 NLQHLDISGSELFSNGWPKKIGTMLPSLRSLVISGR-QFDNDDFSQLCASFPNLRSLDISGTN-ISNL---SGISRLKNL 197 (699)
T ss_pred hhhhcCccccchhhccHHHHHhhhCcccceEEecCc-eecchhHHHHhhccCccceeecCCCC-ccCc---HHHhccccH
Confidence 44444444432 333444555555555555555552 33333355555555566666655543 3322 222345555
Q ss_pred CeEEccCCCCCCHHHHHHHHhcCCCCCEEEccCCCCChh---hHHhc---ccCCCCCEEeeCCCCccCHHHHHHHHhcCc
Q 012207 383 TSLRMECCKLVSWEAFVLIGQQCQYLEELDITENEVNDE---GLKSI---SRCSKLSSLKLGICSNITDEGLKHVGSTCS 456 (468)
Q Consensus 383 ~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~---~~~~l---~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~ 456 (468)
+.|.+.+-+--+...+..++ ++++|+.||++.....+. ....+ ..+|+|+.|+.++. .++...++.+...-|
T Consensus 198 q~L~mrnLe~e~~~~l~~LF-~L~~L~vLDIS~~~~~~~~~ii~qYlec~~~LpeLrfLDcSgT-di~~~~le~ll~sH~ 275 (699)
T KOG3665|consen 198 QVLSMRNLEFESYQDLIDLF-NLKKLRVLDISRDKNNDDTKIIEQYLECGMVLPELRFLDCSGT-DINEEILEELLNSHP 275 (699)
T ss_pred HHHhccCCCCCchhhHHHHh-cccCCCeeeccccccccchHHHHHHHHhcccCccccEEecCCc-chhHHHHHHHHHhCc
Confidence 55555543322223444444 555666666655311111 11111 13556666666655 555555555555555
Q ss_pred ccCeee
Q 012207 457 MLKELD 462 (468)
Q Consensus 457 ~L~~L~ 462 (468)
+|+.+.
T Consensus 276 ~L~~i~ 281 (699)
T KOG3665|consen 276 NLQQIA 281 (699)
T ss_pred cHhhhh
Confidence 555544
|
|
| >KOG3665 consensus ZYG-1-like serine/threonine protein kinases [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.87 E-value=9.6e-09 Score=99.80 Aligned_cols=156 Identities=18% Similarity=0.168 Sum_probs=66.1
Q ss_pred CCCCEEEccCCcccChhhHHHHHhcCCccceEeecCCCCCchhHHHHhhcCCCCCeeEecCCcCChhHHHHHHHhCCCCC
Q 012207 252 KSLKALNLSKCQNISHVGLSSLIKGADYLQQLILAYSFWVSADLSKCLHNFPMLQSIKFEDCPVARSGIKAIGNWHGSLK 331 (468)
Q Consensus 252 ~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~l~~~~~~L~ 331 (468)
.+|++|++++...+.......+...+|+|++|.+.+.....+++.....++|+|.+|+++++++++- ..+. ++++|+
T Consensus 122 ~nL~~LdI~G~~~~s~~W~~kig~~LPsL~sL~i~~~~~~~~dF~~lc~sFpNL~sLDIS~TnI~nl--~GIS-~LknLq 198 (699)
T KOG3665|consen 122 QNLQHLDISGSELFSNGWPKKIGTMLPSLRSLVISGRQFDNDDFSQLCASFPNLRSLDISGTNISNL--SGIS-RLKNLQ 198 (699)
T ss_pred HhhhhcCccccchhhccHHHHHhhhCcccceEEecCceecchhHHHHhhccCccceeecCCCCccCc--HHHh-ccccHH
Confidence 4555555555443333333344444555555555554333444444444555555555555544432 2222 344555
Q ss_pred eEecccCCCCCHHHHHHHHHhCCCCCeEecCCCCCCCHHH-HHHHH---hcCCcCCeEEccCCCCCCHHHHHHHHhcCCC
Q 012207 332 ELSLSKCSGVTDEELSFVVQSHKELRKLDITCCRKITYAS-INSIT---KTCTSLTSLRMECCKLVSWEAFVLIGQQCQY 407 (468)
Q Consensus 332 ~L~l~~~~~~~~~~l~~~~~~~~~L~~L~l~~~~~~~~~~-~~~~~---~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~ 407 (468)
.|.+.+-...+...+..++ .+.+|+.||+|.-....+.. +.... ..+|+|+.|+.++ ..+....+..+...-|+
T Consensus 199 ~L~mrnLe~e~~~~l~~LF-~L~~L~vLDIS~~~~~~~~~ii~qYlec~~~LpeLrfLDcSg-Tdi~~~~le~ll~sH~~ 276 (699)
T KOG3665|consen 199 VLSMRNLEFESYQDLIDLF-NLKKLRVLDISRDKNNDDTKIIEQYLECGMVLPELRFLDCSG-TDINEEILEELLNSHPN 276 (699)
T ss_pred HHhccCCCCCchhhHHHHh-cccCCCeeeccccccccchHHHHHHHHhcccCccccEEecCC-cchhHHHHHHHHHhCcc
Confidence 5544443222223333333 34555555555433222221 11000 1245555555554 33444444444433444
Q ss_pred CCEEE
Q 012207 408 LEELD 412 (468)
Q Consensus 408 L~~L~ 412 (468)
|+.+.
T Consensus 277 L~~i~ 281 (699)
T KOG3665|consen 277 LQQIA 281 (699)
T ss_pred Hhhhh
Confidence 44433
|
|
| >KOG2982 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=98.84 E-value=4.6e-09 Score=87.26 Aligned_cols=106 Identities=15% Similarity=0.173 Sum_probs=61.5
Q ss_pred CCCCeEecccCCCCCHHHHHHHHHhCCCCCeEecCCCCCCCHHHHHHHHhcCCcCCeEEccCCCCCC-HHHHHHHHhcCC
Q 012207 328 GSLKELSLSKCSGVTDEELSFVVQSHKELRKLDITCCRKITYASINSITKTCTSLTSLRMECCKLVS-WEAFVLIGQQCQ 406 (468)
Q Consensus 328 ~~L~~L~l~~~~~~~~~~l~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~-~~~~~~~~~~~~ 406 (468)
+.+++|+.-+|...-+.....+.+.+|++..+.+..|+ +.+.........+|.+..|.++. .++. ..++.++. .+|
T Consensus 173 ~~v~tlh~~~c~~~~w~~~~~l~r~Fpnv~sv~v~e~P-lK~~s~ek~se~~p~~~~LnL~~-~~idswasvD~Ln-~f~ 249 (418)
T KOG2982|consen 173 TEVLTLHQLPCLEQLWLNKNKLSRIFPNVNSVFVCEGP-LKTESSEKGSEPFPSLSCLNLGA-NNIDSWASVDALN-GFP 249 (418)
T ss_pred hhhhhhhcCCcHHHHHHHHHhHHhhcccchheeeecCc-ccchhhcccCCCCCcchhhhhcc-cccccHHHHHHHc-CCc
Confidence 45555655555443344444555566777777777666 44444444444567777777766 3343 34555555 777
Q ss_pred CCCEEEccCCCCChhhHHh------cccCCCCCEEe
Q 012207 407 YLEELDITENEVNDEGLKS------ISRCSKLSSLK 436 (468)
Q Consensus 407 ~L~~L~l~~~~~~~~~~~~------l~~~~~L~~L~ 436 (468)
.|..|.+.++.+.+..-.. ++++++++.|+
T Consensus 250 ~l~dlRv~~~Pl~d~l~~~err~llIaRL~~v~vLN 285 (418)
T KOG2982|consen 250 QLVDLRVSENPLSDPLRGGERRFLLIARLTKVQVLN 285 (418)
T ss_pred hhheeeccCCcccccccCCcceEEEEeeccceEEec
Confidence 7888877777666532111 34567777665
|
|
| >KOG2982 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=98.82 E-value=5e-09 Score=87.06 Aligned_cols=231 Identities=15% Similarity=0.122 Sum_probs=146.5
Q ss_pred CCCeeeecCCCCCChHHHHHHHhcCCCCCEEEccCCcccChhhHHHHHhcCCccceEeecCCCCCchhHHHHhhcCCCCC
Q 012207 227 YLEDLVLEGCHGIDDDGLASVEYSCKSLKALNLSKCQNISHVGLSSLIKGADYLQQLILAYSFWVSADLSKCLHNFPMLQ 306 (468)
Q Consensus 227 ~L~~L~l~~~~~~~~~~~~~l~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~L~ 306 (468)
.++-+.+.++..-.......+...+..++.+++.++.......+..+...+|.|+.|.++.+.. ...+-..-....+|+
T Consensus 46 a~ellvln~~~id~~gd~~~~~~~~~~v~elDL~~N~iSdWseI~~ile~lP~l~~LNls~N~L-~s~I~~lp~p~~nl~ 124 (418)
T KOG2982|consen 46 ALELLVLNGSIIDNEGDVMLFGSSVTDVKELDLTGNLISDWSEIGAILEQLPALTTLNLSCNSL-SSDIKSLPLPLKNLR 124 (418)
T ss_pred chhhheecCCCCCcchhHHHHHHHhhhhhhhhcccchhccHHHHHHHHhcCccceEeeccCCcC-CCccccCcccccceE
Confidence 3344445554332333344556667788888888776555556677778888888888877632 222211112445888
Q ss_pred eeEecCCcCChhHHHHHHHhCCCCCeEecccCC----CCCHHHHHHHHHhCCCCCeEecCCCCCCCHHHHHHHHhcCCcC
Q 012207 307 SIKFEDCPVARSGIKAIGNWHGSLKELSLSKCS----GVTDEELSFVVQSHKELRKLDITCCRKITYASINSITKTCTSL 382 (468)
Q Consensus 307 ~L~l~~~~~~~~~~~~l~~~~~~L~~L~l~~~~----~~~~~~l~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L 382 (468)
.|-+.|+.+.-.........+|.+++|+++.++ +++++.... ..|.+++|++..|..........+.+.+|++
T Consensus 125 ~lVLNgT~L~w~~~~s~l~~lP~vtelHmS~N~~rq~n~Dd~c~e~---~s~~v~tlh~~~c~~~~w~~~~~l~r~Fpnv 201 (418)
T KOG2982|consen 125 VLVLNGTGLSWTQSTSSLDDLPKVTELHMSDNSLRQLNLDDNCIED---WSTEVLTLHQLPCLEQLWLNKNKLSRIFPNV 201 (418)
T ss_pred EEEEcCCCCChhhhhhhhhcchhhhhhhhccchhhhhccccccccc---cchhhhhhhcCCcHHHHHHHHHhHHhhcccc
Confidence 888888887766666666677888888887631 122222211 2356778888777655555566667778999
Q ss_pred CeEEccCCCCCCHHHHHHHHhcCCCCCEEEccCCCCCh-hhHHhcccCCCCCEEeeCCCCccCHH----HHHHHHhcCcc
Q 012207 383 TSLRMECCKLVSWEAFVLIGQQCQYLEELDITENEVND-EGLKSISRCSKLSSLKLGICSNITDE----GLKHVGSTCSM 457 (468)
Q Consensus 383 ~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~-~~~~~l~~~~~L~~L~l~~~~~l~~~----~~~~~~~~~~~ 457 (468)
..+.+..|+--+ .....-.+.+|.+..|+++.+++.+ ..+.++.+++.|..|.+.++|-.... ....+...+++
T Consensus 202 ~sv~v~e~PlK~-~s~ek~se~~p~~~~LnL~~~~idswasvD~Ln~f~~l~dlRv~~~Pl~d~l~~~err~llIaRL~~ 280 (418)
T KOG2982|consen 202 NSVFVCEGPLKT-ESSEKGSEPFPSLSCLNLGANNIDSWASVDALNGFPQLVDLRVSENPLSDPLRGGERRFLLIARLTK 280 (418)
T ss_pred hheeeecCcccc-hhhcccCCCCCcchhhhhcccccccHHHHHHHcCCchhheeeccCCcccccccCCcceEEEEeeccc
Confidence 999998877333 3333333477888888998888876 45566888999999999988443321 11123356667
Q ss_pred cCeee
Q 012207 458 LKELD 462 (468)
Q Consensus 458 L~~L~ 462 (468)
++.|+
T Consensus 281 v~vLN 285 (418)
T KOG2982|consen 281 VQVLN 285 (418)
T ss_pred eEEec
Confidence 76664
|
|
| >COG5238 RNA1 Ran GTPase-activating protein (RanGAP) involved in mRNA processing and transport [Signal transduction mechanisms / RNA processing and modification] | Back alignment and domain information |
|---|
Probab=98.80 E-value=1.4e-07 Score=77.70 Aligned_cols=168 Identities=16% Similarity=0.164 Sum_probs=84.6
Q ss_pred HHhhcCCCCCeeEecCCcCChhHHHHHH------------HhCCCCCeEecccCCCC--CHHHHHHHHHhCCCCCeEecC
Q 012207 297 KCLHNFPMLQSIKFEDCPVARSGIKAIG------------NWHGSLKELSLSKCSGV--TDEELSFVVQSHKELRKLDIT 362 (468)
Q Consensus 297 ~~l~~~~~L~~L~l~~~~~~~~~~~~l~------------~~~~~L~~L~l~~~~~~--~~~~l~~~~~~~~~L~~L~l~ 362 (468)
..+.+...|.+|.+++|.+...+-..++ ..-|.|+.+....+... +..-+...++.-.+|+.+.+.
T Consensus 114 d~is~~t~l~HL~l~NnGlGp~aG~rigkal~~la~nKKaa~kp~Le~vicgrNRlengs~~~~a~~l~sh~~lk~vki~ 193 (388)
T COG5238 114 DLISSSTDLVHLKLNNNGLGPIAGGRIGKALFHLAYNKKAADKPKLEVVICGRNRLENGSKELSAALLESHENLKEVKIQ 193 (388)
T ss_pred HHHhcCCCceeEEeecCCCCccchhHHHHHHHHHHHHhhhccCCCceEEEeccchhccCcHHHHHHHHHhhcCceeEEee
Confidence 3444555666666666644322211111 13466777766553211 112223333334567777777
Q ss_pred CCCCCCHHHHHHHH----hcCCcCCeEEccCCCCCCHHHHHHHH---hcCCCCCEEEccCCCCChhhHHhcc------cC
Q 012207 363 CCRKITYASINSIT----KTCTSLTSLRMECCKLVSWEAFVLIG---QQCQYLEELDITENEVNDEGLKSIS------RC 429 (468)
Q Consensus 363 ~~~~~~~~~~~~~~----~~~~~L~~L~l~~~~~~~~~~~~~~~---~~~~~L~~L~l~~~~~~~~~~~~l~------~~ 429 (468)
+|. |...++..++ ..+.+|+.|++.. +.++..+-..++ ..++.|+.|.+.+|-++..+...+. ..
T Consensus 194 qNg-Irpegv~~L~~~gl~y~~~LevLDlqD-Ntft~~gS~~La~al~~W~~lrEL~lnDClls~~G~~~v~~~f~e~~~ 271 (388)
T COG5238 194 QNG-IRPEGVTMLAFLGLFYSHSLEVLDLQD-NTFTLEGSRYLADALCEWNLLRELRLNDCLLSNEGVKSVLRRFNEKFV 271 (388)
T ss_pred ecC-cCcchhHHHHHHHHHHhCcceeeeccc-cchhhhhHHHHHHHhcccchhhhccccchhhccccHHHHHHHhhhhcC
Confidence 665 5544433322 2467777777765 334444333322 2445667777777766655544432 25
Q ss_pred CCCCEEeeCCCCccCH-----HHHHHHH-hcCcccCeeecCCCC
Q 012207 430 SKLSSLKLGICSNITD-----EGLKHVG-STCSMLKELDLYRFS 467 (468)
Q Consensus 430 ~~L~~L~l~~~~~l~~-----~~~~~~~-~~~~~L~~L~l~~c~ 467 (468)
|+|..|...+| .... ..+..+. ...|-|..|.+.||.
T Consensus 272 p~l~~L~~~Yn-e~~~~~i~~~~l~~~e~~~~p~L~~le~ngNr 314 (388)
T COG5238 272 PNLMPLPGDYN-ERRGGIILDISLNEFEQDAVPLLVDLERNGNR 314 (388)
T ss_pred CCccccccchh-hhcCceeeeechhhhhhcccHHHHHHHHccCc
Confidence 67777777666 3221 1222222 356666666666654
|
|
| >PF14580 LRR_9: Leucine-rich repeat; PDB: 2JE1_D 2JE0_A 2JQD_A | Back alignment and domain information |
|---|
Probab=98.71 E-value=9e-09 Score=81.67 Aligned_cols=104 Identities=23% Similarity=0.236 Sum_probs=32.8
Q ss_pred CCCCCeEecCCCCCCCHHHHHHHHhcCCcCCeEEccCCCCCCHHHHHHHHhcCCCCCEEEccCCCCChh-hHHhcccCCC
Q 012207 353 HKELRKLDITCCRKITYASINSITKTCTSLTSLRMECCKLVSWEAFVLIGQQCQYLEELDITENEVNDE-GLKSISRCSK 431 (468)
Q Consensus 353 ~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~-~~~~l~~~~~ 431 (468)
+.+|+.|++++|. ++.. ..+ ..+++|+.|++++ +.++..+- .+...+|+|++|++++|.|.+. .+..++.+|+
T Consensus 41 l~~L~~L~Ls~N~-I~~l--~~l-~~L~~L~~L~L~~-N~I~~i~~-~l~~~lp~L~~L~L~~N~I~~l~~l~~L~~l~~ 114 (175)
T PF14580_consen 41 LDKLEVLDLSNNQ-ITKL--EGL-PGLPRLKTLDLSN-NRISSISE-GLDKNLPNLQELYLSNNKISDLNELEPLSSLPK 114 (175)
T ss_dssp -TT--EEE-TTS---S----TT-----TT--EEE--S-S---S-CH-HHHHH-TT--EEE-TTS---SCCCCGGGGG-TT
T ss_pred hcCCCEEECCCCC-Cccc--cCc-cChhhhhhcccCC-CCCCcccc-chHHhCCcCCEEECcCCcCCChHHhHHHHcCCC
Confidence 3455555555554 2211 111 2355666666655 33433211 1222456666666666655442 2234555666
Q ss_pred CCEEeeCCCCccCHHHHH-HHHhcCcccCeee
Q 012207 432 LSSLKLGICSNITDEGLK-HVGSTCSMLKELD 462 (468)
Q Consensus 432 L~~L~l~~~~~l~~~~~~-~~~~~~~~L~~L~ 462 (468)
|+.|++.+||--...... .+...+|+|+.|+
T Consensus 115 L~~L~L~~NPv~~~~~YR~~vi~~lP~Lk~LD 146 (175)
T PF14580_consen 115 LRVLSLEGNPVCEKKNYRLFVIYKLPSLKVLD 146 (175)
T ss_dssp --EEE-TT-GGGGSTTHHHHHHHH-TT-SEET
T ss_pred cceeeccCCcccchhhHHHHHHHHcChhheeC
Confidence 666666666332222222 2334566666665
|
|
| >PRK15370 E3 ubiquitin-protein ligase SlrP; Provisional | Back alignment and domain information |
|---|
Probab=98.68 E-value=6e-08 Score=95.35 Aligned_cols=232 Identities=15% Similarity=0.122 Sum_probs=114.7
Q ss_pred CCCcEEeccCCCCCChHHHHHHHhhCCCccEeeecccCCCCCCccccccCCCCCeeeecCCCCCChHHHHHHHhcCCCCC
Q 012207 176 RKLKLLCLKWCIRVTDLGVELVALKCQEIRTLDLSYLPITEKCLPPVVKLQYLEDLVLEGCHGIDDDGLASVEYSCKSLK 255 (468)
Q Consensus 176 ~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~~L~ 255 (468)
++|+.|+++++ .++..+.. .+++|+.|++++|.+.. ....+ .++|+.|++++|. +.... ..+ ..+|+
T Consensus 199 ~~L~~L~Ls~N-~LtsLP~~----l~~nL~~L~Ls~N~Lts-LP~~l--~~~L~~L~Ls~N~-L~~LP-~~l---~s~L~ 265 (754)
T PRK15370 199 EQITTLILDNN-ELKSLPEN----LQGNIKTLYANSNQLTS-IPATL--PDTIQEMELSINR-ITELP-ERL---PSALQ 265 (754)
T ss_pred cCCcEEEecCC-CCCcCChh----hccCCCEEECCCCcccc-CChhh--hccccEEECcCCc-cCcCC-hhH---hCCCC
Confidence 46777777765 34433221 22567777777775542 11112 2467777777743 33221 112 24677
Q ss_pred EEEccCCcccChhhHHHHHhcCCccceEeecCCCCCchhHHHHhhcCCCCCeeEecCCcCChhHHHHHHHhCCCCCeEec
Q 012207 256 ALNLSKCQNISHVGLSSLIKGADYLQQLILAYSFWVSADLSKCLHNFPMLQSIKFEDCPVARSGIKAIGNWHGSLKELSL 335 (468)
Q Consensus 256 ~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~l~~~~~~L~~L~l 335 (468)
.|+++++. +.. +.. .-.++|+.|+++++. +.. ++..+ .++|+.|++.+|.+.... .. ..++|+.|++
T Consensus 266 ~L~Ls~N~-L~~--LP~--~l~~sL~~L~Ls~N~-Lt~-LP~~l--p~sL~~L~Ls~N~Lt~LP-~~---l~~sL~~L~L 332 (754)
T PRK15370 266 SLDLFHNK-ISC--LPE--NLPEELRYLSVYDNS-IRT-LPAHL--PSGITHLNVQSNSLTALP-ET---LPPGLKTLEA 332 (754)
T ss_pred EEECcCCc-cCc--ccc--ccCCCCcEEECCCCc-ccc-Ccccc--hhhHHHHHhcCCccccCC-cc---ccccceeccc
Confidence 77777654 221 111 012467777776652 221 11111 135666777766655321 11 1256777777
Q ss_pred ccCCCCCHHHHHHHHHhCCCCCeEecCCCCCCCHHHHHHHHhcCCcCCeEEccCCCCCCHHHHHHHHhcCCCCCEEEccC
Q 012207 336 SKCSGVTDEELSFVVQSHKELRKLDITCCRKITYASINSITKTCTSLTSLRMECCKLVSWEAFVLIGQQCQYLEELDITE 415 (468)
Q Consensus 336 ~~~~~~~~~~l~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~ 415 (468)
++| .++. ++..+ .++|+.|++++|. ++.. ... -.++|+.|++++|. ++.. ...+. +.|+.|++++
T Consensus 333 s~N-~Lt~--LP~~l--~~sL~~L~Ls~N~-L~~L--P~~--lp~~L~~LdLs~N~-Lt~L-P~~l~---~sL~~LdLs~ 397 (754)
T PRK15370 333 GEN-ALTS--LPASL--PPELQVLDVSKNQ-ITVL--PET--LPPTITTLDVSRNA-LTNL-PENLP---AALQIMQASR 397 (754)
T ss_pred cCC-cccc--CChhh--cCcccEEECCCCC-CCcC--Chh--hcCCcCEEECCCCc-CCCC-CHhHH---HHHHHHhhcc
Confidence 764 3332 22211 2577777777764 3321 111 12567777777754 3311 11121 2466777777
Q ss_pred CCCChhh---HHhcccCCCCCEEeeCCCCccCHHHHH
Q 012207 416 NEVNDEG---LKSISRCSKLSSLKLGICSNITDEGLK 449 (468)
Q Consensus 416 ~~~~~~~---~~~l~~~~~L~~L~l~~~~~l~~~~~~ 449 (468)
|.++... ......++++..|++.+| .++...+.
T Consensus 398 N~L~~LP~sl~~~~~~~~~l~~L~L~~N-pls~~tl~ 433 (754)
T PRK15370 398 NNLVRLPESLPHFRGEGPQPTRIIVEYN-PFSERTIQ 433 (754)
T ss_pred CCcccCchhHHHHhhcCCCccEEEeeCC-CccHHHHH
Confidence 7665421 112234567777777777 56544444
|
|
| >PF00646 F-box: F-box domain; InterPro: IPR001810 The F-box domain was first described as a sequence motif found in cyclin-F that interacts with the protein SKP1 [, ] | Back alignment and domain information |
|---|
Probab=98.65 E-value=1.1e-08 Score=62.79 Aligned_cols=40 Identities=28% Similarity=0.407 Sum_probs=33.8
Q ss_pred CcccCcHHHHHHHHhhhcCChhhhhHHhhhhhhHHHHHHhhh
Q 012207 11 PFDFLSEEIIFNILDHLNNDPFARKSFSLTCRNFYSIESRHR 52 (468)
Q Consensus 11 ~~~~LP~eil~~I~~~~l~~~~~~~~~~~v~~~w~~~~~~~~ 52 (468)
+|.+||+|++.+||+ +++ ..|+.+++.|||+|++++....
T Consensus 2 ~~~~LP~~il~~Il~-~l~-~~~~~~l~~vsk~~~~~~~~~~ 41 (48)
T PF00646_consen 2 PLSDLPDEILQEILS-YLD-PKDLLRLSLVSKRWRSLVDSPR 41 (48)
T ss_dssp HHHHS-HHHHHHHHH-TS--HHHHHHHCTT-HHHHHHHTTHH
T ss_pred CHHHCCHHHHHHHHH-HCc-HHHHHHHHHHhhHHHHHHcCCC
Confidence 578999999999999 997 9999999999999999987654
|
This relatively conserved structural motif is present in numerous proteins and serves as a link between a target protein and a ubiquitin-conjugating enzyme. The SCF complex (e.g., Skp1-Cullin-F-box) plays a similar role as an E3 ligase in the ubiquitin protein degradation pathway [, ]. Different F-box proteins as a part of SCF complex recruit particular substrates for ubiquitination through specific protein-protein interaction domains. Many mammalian F-box domains contain leucine-rich or WD-40 repeats (IPR001680 from INTERPRO). However, several F-box proteins either have other previously described domains such as Sec7 domain found in FBS protein or do not contain defined protein-protein interaction domains or motifs.; GO: 0005515 protein binding; PDB: 2E32_A 2E31_A 3V7D_B 1NEX_B 3MKS_D 3L2O_B. |
| >PF14580 LRR_9: Leucine-rich repeat; PDB: 2JE1_D 2JE0_A 2JQD_A | Back alignment and domain information |
|---|
Probab=98.64 E-value=6.9e-09 Score=82.32 Aligned_cols=107 Identities=20% Similarity=0.175 Sum_probs=39.2
Q ss_pred CCCCCeEecCCCCCCCHHHHHHHHhcCCcCCeEEccCCCCCCHHHHHHHHhcCCCCCEEEccCCCCChhhHHhcccCCCC
Q 012207 353 HKELRKLDITCCRKITYASINSITKTCTSLTSLRMECCKLVSWEAFVLIGQQCQYLEELDITENEVNDEGLKSISRCSKL 432 (468)
Q Consensus 353 ~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L 432 (468)
+..+++|++.++. ++. +..+...+.+|+.|++++|. ++. +..+. .+++|+.|++++|.+++.+......+|+|
T Consensus 18 ~~~~~~L~L~~n~-I~~--Ie~L~~~l~~L~~L~Ls~N~-I~~--l~~l~-~L~~L~~L~L~~N~I~~i~~~l~~~lp~L 90 (175)
T PF14580_consen 18 PVKLRELNLRGNQ-IST--IENLGATLDKLEVLDLSNNQ-ITK--LEGLP-GLPRLKTLDLSNNRISSISEGLDKNLPNL 90 (175)
T ss_dssp ---------------------S--TT-TT--EEE-TTS---S----TT-----TT--EEE--SS---S-CHHHHHH-TT-
T ss_pred ccccccccccccc-ccc--ccchhhhhcCCCEEECCCCC-Ccc--ccCcc-ChhhhhhcccCCCCCCccccchHHhCCcC
Confidence 3467888888875 442 23333357899999999965 442 22233 67999999999999988643222368999
Q ss_pred CEEeeCCCCccCHHHHHHHHhcCcccCeeecCCCC
Q 012207 433 SSLKLGICSNITDEGLKHVGSTCSMLKELDLYRFS 467 (468)
Q Consensus 433 ~~L~l~~~~~l~~~~~~~~~~~~~~L~~L~l~~c~ 467 (468)
+.|.+++| +|.+..--.....+|+|+.|++.+||
T Consensus 91 ~~L~L~~N-~I~~l~~l~~L~~l~~L~~L~L~~NP 124 (175)
T PF14580_consen 91 QELYLSNN-KISDLNELEPLSSLPKLRVLSLEGNP 124 (175)
T ss_dssp -EEE-TTS----SCCCCGGGGG-TT--EEE-TT-G
T ss_pred CEEECcCC-cCCChHHhHHHHcCCCcceeeccCCc
Confidence 99999999 88763222233479999999999997
|
|
| >KOG1259 consensus Nischarin, modulator of integrin alpha5 subunit action [Signal transduction mechanisms; Cytoskeleton] | Back alignment and domain information |
|---|
Probab=98.61 E-value=2.4e-08 Score=83.27 Aligned_cols=127 Identities=20% Similarity=0.178 Sum_probs=66.4
Q ss_pred CCCCeEecccCCCCCHHHHHHHHHhCCCCCeEecCCCCCCCHHHHHHHHhcCCcCCeEEccCCCCCCHHHHHHHHhcCCC
Q 012207 328 GSLKELSLSKCSGVTDEELSFVVQSHKELRKLDITCCRKITYASINSITKTCTSLTSLRMECCKLVSWEAFVLIGQQCQY 407 (468)
Q Consensus 328 ~~L~~L~l~~~~~~~~~~l~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~ 407 (468)
..|+++++++ +.++. +.....-.|.++.|++++|....-.. .+.+++|+.|+++++. ++ .+..+...+-+
T Consensus 284 q~LtelDLS~-N~I~~--iDESvKL~Pkir~L~lS~N~i~~v~n----La~L~~L~~LDLS~N~-Ls--~~~Gwh~KLGN 353 (490)
T KOG1259|consen 284 QELTELDLSG-NLITQ--IDESVKLAPKLRRLILSQNRIRTVQN----LAELPQLQLLDLSGNL-LA--ECVGWHLKLGN 353 (490)
T ss_pred hhhhhccccc-cchhh--hhhhhhhccceeEEeccccceeeehh----hhhcccceEeecccch-hH--hhhhhHhhhcC
Confidence 3566666666 33332 23333345666777776665322222 1245667777776622 22 22223334566
Q ss_pred CCEEEccCCCCChhhHHhcccCCCCCEEeeCCCCccCHHHHHHHHhcCcccCeeecCCCC
Q 012207 408 LEELDITENEVNDEGLKSISRCSKLSSLKLGICSNITDEGLKHVGSTCSMLKELDLYRFS 467 (468)
Q Consensus 408 L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~~L~~L~l~~c~ 467 (468)
.+.|.+++|.+.+ +..+.++-+|..|++.+| +|..-.-..-.+++|-|+.+.+.+||
T Consensus 354 IKtL~La~N~iE~--LSGL~KLYSLvnLDl~~N-~Ie~ldeV~~IG~LPCLE~l~L~~NP 410 (490)
T KOG1259|consen 354 IKTLKLAQNKIET--LSGLRKLYSLVNLDLSSN-QIEELDEVNHIGNLPCLETLRLTGNP 410 (490)
T ss_pred EeeeehhhhhHhh--hhhhHhhhhheecccccc-chhhHHHhcccccccHHHHHhhcCCC
Confidence 6666666665543 244455566666666666 55542222223356666666666665
|
|
| >PRK15370 E3 ubiquitin-protein ligase SlrP; Provisional | Back alignment and domain information |
|---|
Probab=98.53 E-value=3.2e-07 Score=90.32 Aligned_cols=104 Identities=13% Similarity=0.156 Sum_probs=44.9
Q ss_pred CCCCeeEecCCcCChhHHHHHHHhCCCCCeEecccCCCCCHHHHHHHHHhCCCCCeEecCCCCCCCHHHHHHHHhcCCcC
Q 012207 303 PMLQSIKFEDCPVARSGIKAIGNWHGSLKELSLSKCSGVTDEELSFVVQSHKELRKLDITCCRKITYASINSITKTCTSL 382 (468)
Q Consensus 303 ~~L~~L~l~~~~~~~~~~~~l~~~~~~L~~L~l~~~~~~~~~~l~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L 382 (468)
++|+.|.+.+|.++.. +..+ +++|+.|+++++ .++. ++..+ .++|+.|++++|. ++.... .+ .+.|
T Consensus 325 ~sL~~L~Ls~N~Lt~L-P~~l---~~sL~~L~Ls~N-~L~~--LP~~l--p~~L~~LdLs~N~-Lt~LP~-~l---~~sL 390 (754)
T PRK15370 325 PGLKTLEAGENALTSL-PASL---PPELQVLDVSKN-QITV--LPETL--PPTITTLDVSRNA-LTNLPE-NL---PAAL 390 (754)
T ss_pred ccceeccccCCccccC-Chhh---cCcccEEECCCC-CCCc--CChhh--cCCcCEEECCCCc-CCCCCH-hH---HHHH
Confidence 4566666666554421 1111 245666666653 2321 11111 2456666666554 221110 11 1245
Q ss_pred CeEEccCCCCCCH--HHHHHHHhcCCCCCEEEccCCCCChh
Q 012207 383 TSLRMECCKLVSW--EAFVLIGQQCQYLEELDITENEVNDE 421 (468)
Q Consensus 383 ~~L~l~~~~~~~~--~~~~~~~~~~~~L~~L~l~~~~~~~~ 421 (468)
+.|+++++. ++. ..+..+...++++..|++.+|.++..
T Consensus 391 ~~LdLs~N~-L~~LP~sl~~~~~~~~~l~~L~L~~Npls~~ 430 (754)
T PRK15370 391 QIMQASRNN-LVRLPESLPHFRGEGPQPTRIIVEYNPFSER 430 (754)
T ss_pred HHHhhccCC-cccCchhHHHHhhcCCCccEEEeeCCCccHH
Confidence 555555533 221 12233333445566666666655543
|
|
| >KOG4658 consensus Apoptotic ATPase [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=98.50 E-value=3.5e-08 Score=98.54 Aligned_cols=131 Identities=23% Similarity=0.114 Sum_probs=60.6
Q ss_pred CCCCcEEeccCCCCCChHHHHHHHhhCCCccEeeecccCCCCCCccccccCCCCCeeeecCCCCCChHHHHHHHhcCCCC
Q 012207 175 CRKLKLLCLKWCIRVTDLGVELVALKCQEIRTLDLSYLPITEKCLPPVVKLQYLEDLVLEGCHGIDDDGLASVEYSCKSL 254 (468)
Q Consensus 175 ~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~~L 254 (468)
+++|++|-+.++...-......++..+|.|+.|++++|.-....+..++.+-+|++|++++ ..+.. .+..+.. +..|
T Consensus 544 ~~~L~tLll~~n~~~l~~is~~ff~~m~~LrVLDLs~~~~l~~LP~~I~~Li~LryL~L~~-t~I~~-LP~~l~~-Lk~L 620 (889)
T KOG4658|consen 544 NPKLRTLLLQRNSDWLLEISGEFFRSLPLLRVLDLSGNSSLSKLPSSIGELVHLRYLDLSD-TGISH-LPSGLGN-LKKL 620 (889)
T ss_pred CCccceEEEeecchhhhhcCHHHHhhCcceEEEECCCCCccCcCChHHhhhhhhhcccccC-CCccc-cchHHHH-HHhh
Confidence 4556666555532101111122233566666666666544444555566666666666666 33331 1223333 5566
Q ss_pred CEEEccCCcccChhhHHHHHhcCCccceEeecCCC-CCchhHHHHhhcCCCCCeeEe
Q 012207 255 KALNLSKCQNISHVGLSSLIKGADYLQQLILAYSF-WVSADLSKCLHNFPMLQSIKF 310 (468)
Q Consensus 255 ~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~-~~~~~~~~~l~~~~~L~~L~l 310 (468)
.+|++........ +..+...+++|++|.+.... ..+......+.++.+|+.+.+
T Consensus 621 ~~Lnl~~~~~l~~--~~~i~~~L~~Lr~L~l~~s~~~~~~~~l~el~~Le~L~~ls~ 675 (889)
T KOG4658|consen 621 IYLNLEVTGRLES--IPGILLELQSLRVLRLPRSALSNDKLLLKELENLEHLENLSI 675 (889)
T ss_pred heecccccccccc--ccchhhhcccccEEEeeccccccchhhHHhhhcccchhhhee
Confidence 6666654432211 12333445666666665432 222223333444444444444
|
|
| >KOG1259 consensus Nischarin, modulator of integrin alpha5 subunit action [Signal transduction mechanisms; Cytoskeleton] | Back alignment and domain information |
|---|
Probab=98.48 E-value=3.6e-08 Score=82.21 Aligned_cols=127 Identities=13% Similarity=0.200 Sum_probs=78.6
Q ss_pred CCCCCeeEecCCcCChhHHHHHHHhCCCCCeEecccCCCCCHHHHHHHHHhCCCCCeEecCCCCCCCHHHHHHHHhcCCc
Q 012207 302 FPMLQSIKFEDCPVARSGIKAIGNWHGSLKELSLSKCSGVTDEELSFVVQSHKELRKLDITCCRKITYASINSITKTCTS 381 (468)
Q Consensus 302 ~~~L~~L~l~~~~~~~~~~~~l~~~~~~L~~L~l~~~~~~~~~~l~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~ 381 (468)
...|+.+++++|.++.. ..-.+-.|.++.|+++. +.+...+ -+..+++|+.|++++|....-.+ +-..+.+
T Consensus 283 Wq~LtelDLS~N~I~~i--DESvKL~Pkir~L~lS~-N~i~~v~---nLa~L~~L~~LDLS~N~Ls~~~G---wh~KLGN 353 (490)
T KOG1259|consen 283 WQELTELDLSGNLITQI--DESVKLAPKLRRLILSQ-NRIRTVQ---NLAELPQLQLLDLSGNLLAECVG---WHLKLGN 353 (490)
T ss_pred Hhhhhhccccccchhhh--hhhhhhccceeEEeccc-cceeeeh---hhhhcccceEeecccchhHhhhh---hHhhhcC
Confidence 34677777777766521 11112347888888887 3444322 14567888888888876322222 2235678
Q ss_pred CCeEEccCCCCCCHHHHHHHHhcCCCCCEEEccCCCCCh-hhHHhcccCCCCCEEeeCCCC
Q 012207 382 LTSLRMECCKLVSWEAFVLIGQQCQYLEELDITENEVND-EGLKSISRCSKLSSLKLGICS 441 (468)
Q Consensus 382 L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~-~~~~~l~~~~~L~~L~l~~~~ 441 (468)
++.|.+.+ +.+. .+..+. .+-+|..||+++|+|.. +.+..++++|.|+.+.+.+||
T Consensus 354 IKtL~La~-N~iE--~LSGL~-KLYSLvnLDl~~N~Ie~ldeV~~IG~LPCLE~l~L~~NP 410 (490)
T KOG1259|consen 354 IKTLKLAQ-NKIE--TLSGLR-KLYSLVNLDLSSNQIEELDEVNHIGNLPCLETLRLTGNP 410 (490)
T ss_pred Eeeeehhh-hhHh--hhhhhH-hhhhheeccccccchhhHHHhcccccccHHHHHhhcCCC
Confidence 88888877 3232 222222 34468888888887765 344567788888888888884
|
|
| >smart00256 FBOX A Receptor for Ubiquitination Targets | Back alignment and domain information |
|---|
Probab=98.47 E-value=2.1e-07 Score=54.88 Aligned_cols=35 Identities=26% Similarity=0.303 Sum_probs=32.4
Q ss_pred CcHHHHHHHHhhhcCChhhhhHHhhhhhhHHHHHHhh
Q 012207 15 LSEEIIFNILDHLNNDPFARKSFSLTCRNFYSIESRH 51 (468)
Q Consensus 15 LP~eil~~I~~~~l~~~~~~~~~~~v~~~w~~~~~~~ 51 (468)
||+|++..||+ +++ ..|+.+++.|||+|+.++...
T Consensus 1 lP~~ll~~I~~-~l~-~~d~~~~~~vc~~~~~~~~~~ 35 (41)
T smart00256 1 LPDEILEEILS-KLP-PKDLLRLRKVSRRWRSLIDSH 35 (41)
T ss_pred CCHHHHHHHHH-cCC-HHHHHHHHHHHHHHHHHhcCh
Confidence 79999999999 997 999999999999999987654
|
|
| >COG5238 RNA1 Ran GTPase-activating protein (RanGAP) involved in mRNA processing and transport [Signal transduction mechanisms / RNA processing and modification] | Back alignment and domain information |
|---|
Probab=98.45 E-value=5.6e-06 Score=68.47 Aligned_cols=162 Identities=15% Similarity=0.173 Sum_probs=73.4
Q ss_pred hCCCccEeeecccCCCCCCcccc----ccCCCCCeeeecCCCCCChHHHHHHH------------hcCCCCCEEEccCCc
Q 012207 200 KCQEIRTLDLSYLPITEKCLPPV----VKLQYLEDLVLEGCHGIDDDGLASVE------------YSCKSLKALNLSKCQ 263 (468)
Q Consensus 200 ~~~~L~~L~l~~~~~~~~~~~~l----~~~~~L~~L~l~~~~~~~~~~~~~l~------------~~~~~L~~L~l~~~~ 263 (468)
.||+|+..++++|.+....+..+ ++-..|++|.+++| .+....-..++ ..-|.|+......+.
T Consensus 90 kcp~l~~v~LSDNAfg~~~~e~L~d~is~~t~l~HL~l~Nn-GlGp~aG~rigkal~~la~nKKaa~kp~Le~vicgrNR 168 (388)
T COG5238 90 KCPRLQKVDLSDNAFGSEFPEELGDLISSSTDLVHLKLNNN-GLGPIAGGRIGKALFHLAYNKKAADKPKLEVVICGRNR 168 (388)
T ss_pred cCCcceeeeccccccCcccchHHHHHHhcCCCceeEEeecC-CCCccchhHHHHHHHHHHHHhhhccCCCceEEEeccch
Confidence 66666666666665554444332 34556666666653 22222111111 123666666665544
Q ss_pred ccCh--hhHHHHHhcCCccceEeecCCCCCchh-----HHHHhhcCCCCCeeEecCCcCChhHHHHHHH---hCCCCCeE
Q 012207 264 NISH--VGLSSLIKGADYLQQLILAYSFWVSAD-----LSKCLHNFPMLQSIKFEDCPVARSGIKAIGN---WHGSLKEL 333 (468)
Q Consensus 264 ~~~~--~~~~~~~~~~~~L~~L~l~~~~~~~~~-----~~~~l~~~~~L~~L~l~~~~~~~~~~~~l~~---~~~~L~~L 333 (468)
.... .-....+..-.+|+.+.+.++ .+... ....+..+.+|+.|++.+|.++-.+...++. ..+.|+.|
T Consensus 169 lengs~~~~a~~l~sh~~lk~vki~qN-gIrpegv~~L~~~gl~y~~~LevLDlqDNtft~~gS~~La~al~~W~~lrEL 247 (388)
T COG5238 169 LENGSKELSAALLESHENLKEVKIQQN-GIRPEGVTMLAFLGLFYSHSLEVLDLQDNTFTLEGSRYLADALCEWNLLREL 247 (388)
T ss_pred hccCcHHHHHHHHHhhcCceeEEeeec-CcCcchhHHHHHHHHHHhCcceeeeccccchhhhhHHHHHHHhcccchhhhc
Confidence 2221 112222333345555555554 22222 1222334556666666666655444444332 12345666
Q ss_pred ecccCCCCCHHHHHHHHHh-----CCCCCeEecCCC
Q 012207 334 SLSKCSGVTDEELSFVVQS-----HKELRKLDITCC 364 (468)
Q Consensus 334 ~l~~~~~~~~~~l~~~~~~-----~~~L~~L~l~~~ 364 (468)
.+..| -++..+...++.. .|+|..|...++
T Consensus 248 ~lnDC-lls~~G~~~v~~~f~e~~~p~l~~L~~~Yn 282 (388)
T COG5238 248 RLNDC-LLSNEGVKSVLRRFNEKFVPNLMPLPGDYN 282 (388)
T ss_pred cccch-hhccccHHHHHHHhhhhcCCCccccccchh
Confidence 66555 2333333332222 255555555544
|
|
| >KOG4658 consensus Apoptotic ATPase [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=98.41 E-value=1.4e-07 Score=94.36 Aligned_cols=16 Identities=38% Similarity=0.710 Sum_probs=8.8
Q ss_pred CCcCCeEEccCCCCCC
Q 012207 379 CTSLTSLRMECCKLVS 394 (468)
Q Consensus 379 ~~~L~~L~l~~~~~~~ 394 (468)
.|+|+.|.+..|..+.
T Consensus 769 ~~~L~~l~l~~~~~~e 784 (889)
T KOG4658|consen 769 APHLTSLSLVSCRLLE 784 (889)
T ss_pred cCcccEEEEecccccc
Confidence 3566666666555443
|
|
| >KOG0617 consensus Ras suppressor protein (contains leucine-rich repeats) [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=98.41 E-value=1.5e-09 Score=82.49 Aligned_cols=154 Identities=16% Similarity=0.143 Sum_probs=65.9
Q ss_pred CccceEeecCCCCCchhHHHHhhcCCCCCeeEecCCcCChhHHHHHHHhCCCCCeEecccCCCCCHHHHHHHHHhCCCCC
Q 012207 278 DYLQQLILAYSFWVSADLSKCLHNFPMLQSIKFEDCPVARSGIKAIGNWHGSLKELSLSKCSGVTDEELSFVVQSHKELR 357 (468)
Q Consensus 278 ~~L~~L~l~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~l~~~~~~L~~L~l~~~~~~~~~~l~~~~~~~~~L~ 357 (468)
.+++.|.++++.. ..++..++.+.+|+.|++.++.+.+- +..++ .+++|+.|+++-+ .+. .++.-++++|.|+
T Consensus 33 s~ITrLtLSHNKl--~~vppnia~l~nlevln~~nnqie~l-p~~is-sl~klr~lnvgmn-rl~--~lprgfgs~p~le 105 (264)
T KOG0617|consen 33 SNITRLTLSHNKL--TVVPPNIAELKNLEVLNLSNNQIEEL-PTSIS-SLPKLRILNVGMN-RLN--ILPRGFGSFPALE 105 (264)
T ss_pred hhhhhhhcccCce--eecCCcHHHhhhhhhhhcccchhhhc-Chhhh-hchhhhheecchh-hhh--cCccccCCCchhh
Confidence 3455555555421 12333445555666666666554322 22222 4455565555431 111 1222344455566
Q ss_pred eEecCCCCCCCHHHHHHHHhcCCcCCeEEccCCCCCCHHHHHHHHhcCCCCCEEEccCCCCChhhHHhcccCCCCCEEee
Q 012207 358 KLDITCCRKITYASINSITKTCTSLTSLRMECCKLVSWEAFVLIGQQCQYLEELDITENEVNDEGLKSISRCSKLSSLKL 437 (468)
Q Consensus 358 ~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l 437 (468)
.|++.++. +....+..-+..+..|+.|.++..+ .. -....+. .+++|+.|.+..|.+-.. +..++.+..|++|++
T Consensus 106 vldltynn-l~e~~lpgnff~m~tlralyl~dnd-fe-~lp~dvg-~lt~lqil~lrdndll~l-pkeig~lt~lrelhi 180 (264)
T KOG0617|consen 106 VLDLTYNN-LNENSLPGNFFYMTTLRALYLGDND-FE-ILPPDVG-KLTNLQILSLRDNDLLSL-PKEIGDLTRLRELHI 180 (264)
T ss_pred hhhccccc-cccccCCcchhHHHHHHHHHhcCCC-cc-cCChhhh-hhcceeEEeeccCchhhC-cHHHHHHHHHHHHhc
Confidence 66655543 2222222111123334444443311 10 0011122 455566665555544332 234444555566666
Q ss_pred CCCCccC
Q 012207 438 GICSNIT 444 (468)
Q Consensus 438 ~~~~~l~ 444 (468)
.+| +++
T Consensus 181 qgn-rl~ 186 (264)
T KOG0617|consen 181 QGN-RLT 186 (264)
T ss_pred ccc-eee
Confidence 665 444
|
|
| >PF13855 LRR_8: Leucine rich repeat; PDB: 2O6S_A 3A79_B 3RFS_A 3G39_A 3VQ2_A 3VQ1_B 2Z64_A 2Z66_C 3FXI_A 2Z63_A | Back alignment and domain information |
|---|
Probab=98.27 E-value=1.1e-07 Score=61.68 Aligned_cols=60 Identities=28% Similarity=0.280 Sum_probs=39.5
Q ss_pred CCCCEEEccCCCCChhhHHhcccCCCCCEEeeCCCCccCHHHHHHHHhcCcccCeeecCCCC
Q 012207 406 QYLEELDITENEVNDEGLKSISRCSKLSSLKLGICSNITDEGLKHVGSTCSMLKELDLYRFS 467 (468)
Q Consensus 406 ~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~~L~~L~l~~c~ 467 (468)
|+|++|++++|.++......+..+++|++|++++| .++..... .+..+++|+.|++++|+
T Consensus 1 p~L~~L~l~~n~l~~i~~~~f~~l~~L~~L~l~~N-~l~~i~~~-~f~~l~~L~~L~l~~N~ 60 (61)
T PF13855_consen 1 PNLESLDLSNNKLTEIPPDSFSNLPNLETLDLSNN-NLTSIPPD-AFSNLPNLRYLDLSNNN 60 (61)
T ss_dssp TTESEEEETSSTESEECTTTTTTGTTESEEEETSS-SESEEETT-TTTTSTTESEEEETSSS
T ss_pred CcCcEEECCCCCCCccCHHHHcCCCCCCEeEccCC-ccCccCHH-HHcCCCCCCEEeCcCCc
Confidence 46777777777777666566667777777777777 66642222 33467777777777765
|
... |
| >KOG1859 consensus Leucine-rich repeat proteins [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.27 E-value=1e-07 Score=89.14 Aligned_cols=52 Identities=21% Similarity=0.235 Sum_probs=27.8
Q ss_pred HHHhhCCCccEeeecccCCCCC-CccccccCCCCCeeeecCCCCCChHHHHHH
Q 012207 196 LVALKCQEIRTLDLSYLPITEK-CLPPVVKLQYLEDLVLEGCHGIDDDGLASV 247 (468)
Q Consensus 196 ~~~~~~~~L~~L~l~~~~~~~~-~~~~l~~~~~L~~L~l~~~~~~~~~~~~~l 247 (468)
.+....++++.|.+-...-.+. .+-.+..+..|++|.+.+|+--...++..+
T Consensus 78 ~i~d~lqkt~~lkl~~~pa~~pt~pi~ifpF~sLr~LElrg~~L~~~~GL~~l 130 (1096)
T KOG1859|consen 78 RILDFLQKTKVLKLLPSPARDPTEPISIFPFRSLRVLELRGCDLSTAKGLQEL 130 (1096)
T ss_pred HHHHHHhhheeeeecccCCCCCCCCceeccccceeeEEecCcchhhhhhhHHH
Confidence 3344556666666655422211 134455677777777777654443444333
|
|
| >KOG3864 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=98.24 E-value=1.2e-06 Score=69.02 Aligned_cols=89 Identities=21% Similarity=0.309 Sum_probs=60.7
Q ss_pred CCCeeEecCCcCChhHHHHHHHhCCCCCeEecccCCCCCHHHHHHHHHhCCCCCeEecCCCCCCCHHHHHHHHhcCCcCC
Q 012207 304 MLQSIKFEDCPVARSGIKAIGNWHGSLKELSLSKCSGVTDEELSFVVQSHKELRKLDITCCRKITYASINSITKTCTSLT 383 (468)
Q Consensus 304 ~L~~L~l~~~~~~~~~~~~l~~~~~~L~~L~l~~~~~~~~~~l~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~ 383 (468)
.++.++-+++.+..+++..+. .++.++.|.+.+|..+.+.++..+..-.|+|+.|+|++|+.|++.++..+. .+++|+
T Consensus 102 ~IeaVDAsds~I~~eGle~L~-~l~~i~~l~l~~ck~~dD~~L~~l~~~~~~L~~L~lsgC~rIT~~GL~~L~-~lknLr 179 (221)
T KOG3864|consen 102 KIEAVDASDSSIMYEGLEHLR-DLRSIKSLSLANCKYFDDWCLERLGGLAPSLQDLDLSGCPRITDGGLACLL-KLKNLR 179 (221)
T ss_pred eEEEEecCCchHHHHHHHHHh-ccchhhhheeccccchhhHHHHHhcccccchheeeccCCCeechhHHHHHH-HhhhhH
Confidence 355555566666667777665 667777777777777777777766666677777777777777777776654 567777
Q ss_pred eEEccCCCCCC
Q 012207 384 SLRMECCKLVS 394 (468)
Q Consensus 384 ~L~l~~~~~~~ 394 (468)
.|.+.+-+.+.
T Consensus 180 ~L~l~~l~~v~ 190 (221)
T KOG3864|consen 180 RLHLYDLPYVA 190 (221)
T ss_pred HHHhcCchhhh
Confidence 77776644443
|
|
| >KOG3864 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=98.11 E-value=3.1e-06 Score=66.85 Aligned_cols=84 Identities=14% Similarity=0.299 Sum_probs=55.2
Q ss_pred CCCeEecccCCCCCHHHHHHHHHhCCCCCeEecCCCCCCCHHHHHHHHhcCCcCCeEEccCCCCCCHHHHHHHHhcCCCC
Q 012207 329 SLKELSLSKCSGVTDEELSFVVQSHKELRKLDITCCRKITYASINSITKTCTSLTSLRMECCKLVSWEAFVLIGQQCQYL 408 (468)
Q Consensus 329 ~L~~L~l~~~~~~~~~~l~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L 408 (468)
.++.++-++ ..+..+|+..+ ..++.++.|.+.+|..+.+..+..+.+-.++|+.|+|++|+.||+.++..+. .+++|
T Consensus 102 ~IeaVDAsd-s~I~~eGle~L-~~l~~i~~l~l~~ck~~dD~~L~~l~~~~~~L~~L~lsgC~rIT~~GL~~L~-~lknL 178 (221)
T KOG3864|consen 102 KIEAVDASD-SSIMYEGLEHL-RDLRSIKSLSLANCKYFDDWCLERLGGLAPSLQDLDLSGCPRITDGGLACLL-KLKNL 178 (221)
T ss_pred eEEEEecCC-chHHHHHHHHH-hccchhhhheeccccchhhHHHHHhcccccchheeeccCCCeechhHHHHHH-Hhhhh
Confidence 345555555 35555565543 3567777777777777777777766666677777777777777777776666 66667
Q ss_pred CEEEccC
Q 012207 409 EELDITE 415 (468)
Q Consensus 409 ~~L~l~~ 415 (468)
+.|.+.+
T Consensus 179 r~L~l~~ 185 (221)
T KOG3864|consen 179 RRLHLYD 185 (221)
T ss_pred HHHHhcC
Confidence 7766655
|
|
| >PF13855 LRR_8: Leucine rich repeat; PDB: 2O6S_A 3A79_B 3RFS_A 3G39_A 3VQ2_A 3VQ1_B 2Z64_A 2Z66_C 3FXI_A 2Z63_A | Back alignment and domain information |
|---|
Probab=98.03 E-value=9.2e-07 Score=57.34 Aligned_cols=59 Identities=20% Similarity=0.161 Sum_probs=46.2
Q ss_pred CcCCeEEccCCCCCCHHHHHHHHhcCCCCCEEEccCCCCChhhHHhcccCCCCCEEeeCCC
Q 012207 380 TSLTSLRMECCKLVSWEAFVLIGQQCQYLEELDITENEVNDEGLKSISRCSKLSSLKLGIC 440 (468)
Q Consensus 380 ~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~ 440 (468)
|+|++|++++| .++.-....+. .+++|++|++++|.++......+..+++|+.|++++|
T Consensus 1 p~L~~L~l~~n-~l~~i~~~~f~-~l~~L~~L~l~~N~l~~i~~~~f~~l~~L~~L~l~~N 59 (61)
T PF13855_consen 1 PNLESLDLSNN-KLTEIPPDSFS-NLPNLETLDLSNNNLTSIPPDAFSNLPNLRYLDLSNN 59 (61)
T ss_dssp TTESEEEETSS-TESEECTTTTT-TGTTESEEEETSSSESEEETTTTTTSTTESEEEETSS
T ss_pred CcCcEEECCCC-CCCccCHHHHc-CCCCCCEeEccCCccCccCHHHHcCCCCCCEEeCcCC
Confidence 56788888875 35433222233 7899999999999998888788889999999999998
|
... |
| >KOG0617 consensus Ras suppressor protein (contains leucine-rich repeats) [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=98.00 E-value=5.9e-08 Score=74.04 Aligned_cols=34 Identities=21% Similarity=0.219 Sum_probs=16.0
Q ss_pred hCCCccEeeecccCCCCCCccccccCCCCCeeeec
Q 012207 200 KCQEIRTLDLSYLPITEKCLPPVVKLQYLEDLVLE 234 (468)
Q Consensus 200 ~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~ 234 (468)
...+|+.|++.++.+. +.+..++++++|+.|++.
T Consensus 54 ~l~nlevln~~nnqie-~lp~~issl~klr~lnvg 87 (264)
T KOG0617|consen 54 ELKNLEVLNLSNNQIE-ELPTSISSLPKLRILNVG 87 (264)
T ss_pred Hhhhhhhhhcccchhh-hcChhhhhchhhhheecc
Confidence 3344555555554443 233444445555555444
|
|
| >KOG1859 consensus Leucine-rich repeat proteins [General function prediction only] | Back alignment and domain information |
|---|
Probab=97.91 E-value=4.7e-06 Score=78.42 Aligned_cols=108 Identities=18% Similarity=0.174 Sum_probs=75.1
Q ss_pred HHHhCCCCCeEecCCCCCCCHHHHHHHHhcCCcCCeEEccCCCCCCHHHHHHHHh-cCCCCCEEEccCCCCChhhHHhcc
Q 012207 349 VVQSHKELRKLDITCCRKITYASINSITKTCTSLTSLRMECCKLVSWEAFVLIGQ-QCQYLEELDITENEVNDEGLKSIS 427 (468)
Q Consensus 349 ~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~-~~~~L~~L~l~~~~~~~~~~~~l~ 427 (468)
.++-+|.|+.|+++.|. +++.. ....|+.|++|+|+++. +.. +..+.. .|. |+.|.+++|.++. +..+.
T Consensus 182 SLqll~ale~LnLshNk-~~~v~---~Lr~l~~LkhLDlsyN~-L~~--vp~l~~~gc~-L~~L~lrnN~l~t--L~gie 251 (1096)
T KOG1859|consen 182 SLQLLPALESLNLSHNK-FTKVD---NLRRLPKLKHLDLSYNC-LRH--VPQLSMVGCK-LQLLNLRNNALTT--LRGIE 251 (1096)
T ss_pred HHHHHHHhhhhccchhh-hhhhH---HHHhcccccccccccch-hcc--ccccchhhhh-heeeeecccHHHh--hhhHH
Confidence 34456889999999886 44332 33578999999998733 321 222211 333 9999999998876 35667
Q ss_pred cCCCCCEEeeCCCCccCHHHHHHHHhcCcccCeeecCCCC
Q 012207 428 RCSKLSSLKLGICSNITDEGLKHVGSTCSMLKELDLYRFS 467 (468)
Q Consensus 428 ~~~~L~~L~l~~~~~l~~~~~~~~~~~~~~L~~L~l~~c~ 467 (468)
++.+|+.|++++| -+.+.+--.....+..|+.|.+.|||
T Consensus 252 ~LksL~~LDlsyN-ll~~hseL~pLwsLs~L~~L~LeGNP 290 (1096)
T KOG1859|consen 252 NLKSLYGLDLSYN-LLSEHSELEPLWSLSSLIVLWLEGNP 290 (1096)
T ss_pred hhhhhhccchhHh-hhhcchhhhHHHHHHHHHHHhhcCCc
Confidence 8899999999999 66653333334468899999999997
|
|
| >PLN03150 hypothetical protein; Provisional | Back alignment and domain information |
|---|
Probab=97.64 E-value=9.1e-05 Score=72.75 Aligned_cols=107 Identities=15% Similarity=0.116 Sum_probs=55.1
Q ss_pred CCeEecCCCCCCCHHHHHHHHhcCCcCCeEEccCCCCCCHHHHHHHHhcCCCCCEEEccCCCCChhhHHhcccCCCCCEE
Q 012207 356 LRKLDITCCRKITYASINSITKTCTSLTSLRMECCKLVSWEAFVLIGQQCQYLEELDITENEVNDEGLKSISRCSKLSSL 435 (468)
Q Consensus 356 L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L 435 (468)
++.|+++++. +... +......+++|+.|+++++. +.......+. .+++|+.|++++|.++...+..++++++|+.|
T Consensus 420 v~~L~L~~n~-L~g~-ip~~i~~L~~L~~L~Ls~N~-l~g~iP~~~~-~l~~L~~LdLs~N~lsg~iP~~l~~L~~L~~L 495 (623)
T PLN03150 420 IDGLGLDNQG-LRGF-IPNDISKLRHLQSINLSGNS-IRGNIPPSLG-SITSLEVLDLSYNSFNGSIPESLGQLTSLRIL 495 (623)
T ss_pred EEEEECCCCC-cccc-CCHHHhCCCCCCEEECCCCc-ccCcCChHHh-CCCCCCEEECCCCCCCCCCchHHhcCCCCCEE
Confidence 5556666554 2211 11122356667777776643 3322112232 56667777777776666555666666677777
Q ss_pred eeCCCCccCHHHHHHHHhcCcccCeeecCCCC
Q 012207 436 KLGICSNITDEGLKHVGSTCSMLKELDLYRFS 467 (468)
Q Consensus 436 ~l~~~~~l~~~~~~~~~~~~~~L~~L~l~~c~ 467 (468)
++++| .++......+.....++..+++.+|+
T Consensus 496 ~Ls~N-~l~g~iP~~l~~~~~~~~~l~~~~N~ 526 (623)
T PLN03150 496 NLNGN-SLSGRVPAALGGRLLHRASFNFTDNA 526 (623)
T ss_pred ECcCC-cccccCChHHhhccccCceEEecCCc
Confidence 77766 55432222222223345555555543
|
|
| >PF12799 LRR_4: Leucine Rich repeats (2 copies); PDB: 2OMT_A 1XEU_A 2OMX_A 2OMU_A 2UZY_A 2WQU_D 1D0B_A 2WQW_A 1OTO_A 2WQV_B | Back alignment and domain information |
|---|
Probab=97.61 E-value=9.4e-05 Score=43.69 Aligned_cols=38 Identities=34% Similarity=0.517 Sum_probs=28.2
Q ss_pred CCCCEEEccCCCCChhhHHhcccCCCCCEEeeCCCCccCH
Q 012207 406 QYLEELDITENEVNDEGLKSISRCSKLSSLKLGICSNITD 445 (468)
Q Consensus 406 ~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~l~~ 445 (468)
++|++|++++|.+++.. ..++++++|+.|++++| .+++
T Consensus 1 ~~L~~L~l~~N~i~~l~-~~l~~l~~L~~L~l~~N-~i~~ 38 (44)
T PF12799_consen 1 KNLEELDLSNNQITDLP-PELSNLPNLETLNLSNN-PISD 38 (44)
T ss_dssp TT-SEEEETSSS-SSHG-GHGTTCTTSSEEEETSS-CCSB
T ss_pred CcceEEEccCCCCcccC-chHhCCCCCCEEEecCC-CCCC
Confidence 57888888888888754 24788888999999888 7763
|
... |
| >PLN03150 hypothetical protein; Provisional | Back alignment and domain information |
|---|
Probab=97.24 E-value=0.00079 Score=66.29 Aligned_cols=106 Identities=14% Similarity=0.194 Sum_probs=67.2
Q ss_pred CCeeeecCCCCCChHHHHHHHhcCCCCCEEEccCCcccChhhHHHHHhcCCccceEeecCCCCCchhHHHHhhcCCCCCe
Q 012207 228 LEDLVLEGCHGIDDDGLASVEYSCKSLKALNLSKCQNISHVGLSSLIKGADYLQQLILAYSFWVSADLSKCLHNFPMLQS 307 (468)
Q Consensus 228 L~~L~l~~~~~~~~~~~~~l~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~L~~ 307 (468)
++.|+++++ .+.......+.. +++|+.|+++++.... .+...+..+++|+.|+++++ .+...++..+.++++|+.
T Consensus 420 v~~L~L~~n-~L~g~ip~~i~~-L~~L~~L~Ls~N~l~g--~iP~~~~~l~~L~~LdLs~N-~lsg~iP~~l~~L~~L~~ 494 (623)
T PLN03150 420 IDGLGLDNQ-GLRGFIPNDISK-LRHLQSINLSGNSIRG--NIPPSLGSITSLEVLDLSYN-SFNGSIPESLGQLTSLRI 494 (623)
T ss_pred EEEEECCCC-CccccCCHHHhC-CCCCCEEECCCCcccC--cCChHHhCCCCCCEEECCCC-CCCCCCchHHhcCCCCCE
Confidence 566777663 333333334554 7888888888765321 12334566777888888776 455566777788888888
Q ss_pred eEecCCcCChhHHHHHHHhCCCCCeEecccC
Q 012207 308 IKFEDCPVARSGIKAIGNWHGSLKELSLSKC 338 (468)
Q Consensus 308 L~l~~~~~~~~~~~~l~~~~~~L~~L~l~~~ 338 (468)
|++++|.+....+..+.....++..+++.++
T Consensus 495 L~Ls~N~l~g~iP~~l~~~~~~~~~l~~~~N 525 (623)
T PLN03150 495 LNLNGNSLSGRVPAALGGRLLHRASFNFTDN 525 (623)
T ss_pred EECcCCcccccCChHHhhccccCceEEecCC
Confidence 8888887776655555433345666666654
|
|
| >COG4886 Leucine-rich repeat (LRR) protein [Function unknown] | Back alignment and domain information |
|---|
Probab=97.23 E-value=0.00026 Score=66.14 Aligned_cols=175 Identities=19% Similarity=0.208 Sum_probs=113.8
Q ss_pred CCCCCEEEccCCcccChhhHHHHHhcC-CccceEeecCCCCCchhHHHHhhcCCCCCeeEecCCcCChhHHHHHHHhCCC
Q 012207 251 CKSLKALNLSKCQNISHVGLSSLIKGA-DYLQQLILAYSFWVSADLSKCLHNFPMLQSIKFEDCPVARSGIKAIGNWHGS 329 (468)
Q Consensus 251 ~~~L~~L~l~~~~~~~~~~~~~~~~~~-~~L~~L~l~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~l~~~~~~ 329 (468)
.+.++.|.+.++.... +....... ++|+.|+++.+.. ...+..+..+++|+.|.+..|++.+...... ..++
T Consensus 115 ~~~l~~L~l~~n~i~~---i~~~~~~~~~nL~~L~l~~N~i--~~l~~~~~~l~~L~~L~l~~N~l~~l~~~~~--~~~~ 187 (394)
T COG4886 115 LTNLTSLDLDNNNITD---IPPLIGLLKSNLKELDLSDNKI--ESLPSPLRNLPNLKNLDLSFNDLSDLPKLLS--NLSN 187 (394)
T ss_pred ccceeEEecCCccccc---Cccccccchhhcccccccccch--hhhhhhhhccccccccccCCchhhhhhhhhh--hhhh
Confidence 5788899888765322 22233334 3899999887622 2333567889999999999998876544431 3578
Q ss_pred CCeEecccCCCCCHHHHHHHHHhCCCCCeEecCCCCCCCHHHHHHHHhcCCcCCeEEccCCCCCCHHHHHHHHhcCCCCC
Q 012207 330 LKELSLSKCSGVTDEELSFVVQSHKELRKLDITCCRKITYASINSITKTCTSLTSLRMECCKLVSWEAFVLIGQQCQYLE 409 (468)
Q Consensus 330 L~~L~l~~~~~~~~~~l~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~ 409 (468)
|+.|++++ +.+.+ ++........|++|.++++..+.... ....+.++..+.+.+ ..+.. +......+++++
T Consensus 188 L~~L~ls~-N~i~~--l~~~~~~~~~L~~l~~~~N~~~~~~~---~~~~~~~l~~l~l~~-n~~~~--~~~~~~~l~~l~ 258 (394)
T COG4886 188 LNNLDLSG-NKISD--LPPEIELLSALEELDLSNNSIIELLS---SLSNLKNLSGLELSN-NKLED--LPESIGNLSNLE 258 (394)
T ss_pred hhheeccC-Ccccc--CchhhhhhhhhhhhhhcCCcceecch---hhhhcccccccccCC-ceeee--ccchhccccccc
Confidence 99999998 45543 34433344569999998875333221 223566666666554 22222 112222677899
Q ss_pred EEEccCCCCChhhHHhcccCCCCCEEeeCCCCccC
Q 012207 410 ELDITENEVNDEGLKSISRCSKLSSLKLGICSNIT 444 (468)
Q Consensus 410 ~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~l~ 444 (468)
.|++++|.+++... ++...+++.|+++++ .+.
T Consensus 259 ~L~~s~n~i~~i~~--~~~~~~l~~L~~s~n-~~~ 290 (394)
T COG4886 259 TLDLSNNQISSISS--LGSLTNLRELDLSGN-SLS 290 (394)
T ss_pred eecccccccccccc--ccccCccCEEeccCc-ccc
Confidence 99999998888654 777889999999988 444
|
|
| >COG4886 Leucine-rich repeat (LRR) protein [Function unknown] | Back alignment and domain information |
|---|
Probab=97.23 E-value=0.00038 Score=65.05 Aligned_cols=199 Identities=22% Similarity=0.265 Sum_probs=123.3
Q ss_pred EeeecccCCCCCCccccccCCCCCeeeecCCCCCChHHHHHHHhcC-CCCCEEEccCCcccChhhHHHHHhcCCccceEe
Q 012207 206 TLDLSYLPITEKCLPPVVKLQYLEDLVLEGCHGIDDDGLASVEYSC-KSLKALNLSKCQNISHVGLSSLIKGADYLQQLI 284 (468)
Q Consensus 206 ~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~l~~~~-~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~ 284 (468)
.+....+.+. .....+...+.++.|.+.+ +.+.+... ..... ++|+.|+++++... . +..-...+++|+.|+
T Consensus 97 ~l~~~~~~~~-~~~~~~~~~~~l~~L~l~~-n~i~~i~~--~~~~~~~nL~~L~l~~N~i~-~--l~~~~~~l~~L~~L~ 169 (394)
T COG4886 97 SLDLNLNRLR-SNISELLELTNLTSLDLDN-NNITDIPP--LIGLLKSNLKELDLSDNKIE-S--LPSPLRNLPNLKNLD 169 (394)
T ss_pred eeeccccccc-cCchhhhcccceeEEecCC-cccccCcc--ccccchhhcccccccccchh-h--hhhhhhccccccccc
Confidence 4555555432 2233444557888888887 34443322 12214 38999999987632 1 113367789999999
Q ss_pred ecCCCCCchhHHHHhhcCCCCCeeEecCCcCChhHHHHHHHhCCCCCeEecccCCCCCHHHHHHHHHhCCCCCeEecCCC
Q 012207 285 LAYSFWVSADLSKCLHNFPMLQSIKFEDCPVARSGIKAIGNWHGSLKELSLSKCSGVTDEELSFVVQSHKELRKLDITCC 364 (468)
Q Consensus 285 l~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~l~~~~~~L~~L~l~~~~~~~~~~l~~~~~~~~~L~~L~l~~~ 364 (468)
++++.. .+++......+.|+.|.++++.+.+-.... .....|++|.+++...+. .......+.++..+.+.++
T Consensus 170 l~~N~l--~~l~~~~~~~~~L~~L~ls~N~i~~l~~~~--~~~~~L~~l~~~~N~~~~---~~~~~~~~~~l~~l~l~~n 242 (394)
T COG4886 170 LSFNDL--SDLPKLLSNLSNLNNLDLSGNKISDLPPEI--ELLSALEELDLSNNSIIE---LLSSLSNLKNLSGLELSNN 242 (394)
T ss_pred cCCchh--hhhhhhhhhhhhhhheeccCCccccCchhh--hhhhhhhhhhhcCCccee---cchhhhhcccccccccCCc
Confidence 998732 233333447889999999999876543331 123569999998843232 2333556677777777665
Q ss_pred CCCCHHHHHHHHhcCCcCCeEEccCCCCCCHHHHHHHHhcCCCCCEEEccCCCCChhhHHh
Q 012207 365 RKITYASINSITKTCTSLTSLRMECCKLVSWEAFVLIGQQCQYLEELDITENEVNDEGLKS 425 (468)
Q Consensus 365 ~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~ 425 (468)
. +.+ +......+++++.|+++++. +++... +. ...+++.|+++++.+.......
T Consensus 243 ~-~~~--~~~~~~~l~~l~~L~~s~n~-i~~i~~--~~-~~~~l~~L~~s~n~~~~~~~~~ 296 (394)
T COG4886 243 K-LED--LPESIGNLSNLETLDLSNNQ-ISSISS--LG-SLTNLRELDLSGNSLSNALPLI 296 (394)
T ss_pred e-eee--ccchhccccccceecccccc-cccccc--cc-ccCccCEEeccCccccccchhh
Confidence 4 222 12333567889999999844 443332 33 7789999999998776654333
|
|
| >PF12799 LRR_4: Leucine Rich repeats (2 copies); PDB: 2OMT_A 1XEU_A 2OMX_A 2OMU_A 2UZY_A 2WQU_D 1D0B_A 2WQW_A 1OTO_A 2WQV_B | Back alignment and domain information |
|---|
Probab=97.14 E-value=0.00045 Score=40.77 Aligned_cols=35 Identities=31% Similarity=0.267 Sum_probs=28.4
Q ss_pred CCCCEEeeCCCCccCHHHHHHHHhcCcccCeeecCCCC
Q 012207 430 SKLSSLKLGICSNITDEGLKHVGSTCSMLKELDLYRFS 467 (468)
Q Consensus 430 ~~L~~L~l~~~~~l~~~~~~~~~~~~~~L~~L~l~~c~ 467 (468)
++|++|++++| +|++ ++.....+++|+.|++++|+
T Consensus 1 ~~L~~L~l~~N-~i~~--l~~~l~~l~~L~~L~l~~N~ 35 (44)
T PF12799_consen 1 KNLEELDLSNN-QITD--LPPELSNLPNLETLNLSNNP 35 (44)
T ss_dssp TT-SEEEETSS-S-SS--HGGHGTTCTTSSEEEETSSC
T ss_pred CcceEEEccCC-CCcc--cCchHhCCCCCCEEEecCCC
Confidence 58999999999 9996 55545689999999999996
|
... |
| >KOG2123 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=97.02 E-value=0.00024 Score=59.34 Aligned_cols=102 Identities=23% Similarity=0.269 Sum_probs=52.6
Q ss_pred CCCCCeEeccCCcccChHhHHHHHhcCCCCcEEeccCCCCCChHHHHHHHhhCCCccEeeecccCCCCC-CccccccCCC
Q 012207 149 AKNLERLWLARCKLITDLGIGRIAACCRKLKLLCLKWCIRVTDLGVELVALKCQEIRTLDLSYLPITEK-CLPPVVKLQY 227 (468)
Q Consensus 149 ~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~-~~~~l~~~~~ 227 (468)
+.+.++|+..+|. ++|.. +...++.|++|.++-+ .++.... +..|.+|++|.|..|.+.+. .+..+.++|+
T Consensus 18 l~~vkKLNcwg~~-L~DIs---ic~kMp~lEVLsLSvN-kIssL~p---l~rCtrLkElYLRkN~I~sldEL~YLknlps 89 (388)
T KOG2123|consen 18 LENVKKLNCWGCG-LDDIS---ICEKMPLLEVLSLSVN-KISSLAP---LQRCTRLKELYLRKNCIESLDELEYLKNLPS 89 (388)
T ss_pred HHHhhhhcccCCC-ccHHH---HHHhcccceeEEeecc-ccccchh---HHHHHHHHHHHHHhcccccHHHHHHHhcCch
Confidence 3456667776654 45533 2333677777777664 2332211 12677777777776655421 2233446677
Q ss_pred CCeeeecCCCCCChHH---HHHHHhcCCCCCEEE
Q 012207 228 LEDLVLEGCHGIDDDG---LASVEYSCKSLKALN 258 (468)
Q Consensus 228 L~~L~l~~~~~~~~~~---~~~l~~~~~~L~~L~ 258 (468)
|+.|.+..++.....+ -......+|+|++|+
T Consensus 90 Lr~LWL~ENPCc~~ag~nYR~~VLR~LPnLkKLD 123 (388)
T KOG2123|consen 90 LRTLWLDENPCCGEAGQNYRRKVLRVLPNLKKLD 123 (388)
T ss_pred hhhHhhccCCcccccchhHHHHHHHHcccchhcc
Confidence 7777666544332211 112222366666664
|
|
| >KOG4308 consensus LRR-containing protein [Function unknown] | Back alignment and domain information |
|---|
Probab=96.96 E-value=0.00029 Score=66.11 Aligned_cols=178 Identities=21% Similarity=0.296 Sum_probs=108.2
Q ss_pred HHHHHhcCCccceEeecCCCCCchhHHHHhh----cC-CCCCeeEecCCcCChhHHHHHHH---hCCCCCeEecccCCCC
Q 012207 270 LSSLIKGADYLQQLILAYSFWVSADLSKCLH----NF-PMLQSIKFEDCPVARSGIKAIGN---WHGSLKELSLSKCSGV 341 (468)
Q Consensus 270 ~~~~~~~~~~L~~L~l~~~~~~~~~~~~~l~----~~-~~L~~L~l~~~~~~~~~~~~l~~---~~~~L~~L~l~~~~~~ 341 (468)
+...+...+.|+.|+++++..- +.....+. .. ..++.|.+..|.++..+...+.. ....++.++++.+. +
T Consensus 107 l~~~l~t~~~L~~L~l~~n~l~-~~g~~~l~~~l~~~~~~l~~L~l~~c~l~~~g~~~l~~~L~~~~~l~~l~l~~n~-l 184 (478)
T KOG4308|consen 107 LAQALKTLPTLGQLDLSGNNLG-DEGARLLCEGLRLPQCLLQTLELVSCSLTSEGAAPLAAVLEKNEHLTELDLSLNG-L 184 (478)
T ss_pred HHHHhcccccHhHhhcccCCCc-cHhHHHHHhhcccchHHHHHHHhhcccccccchHHHHHHHhcccchhHHHHHhcc-c
Confidence 3344556778888888887433 33333322 22 46777888888877766655543 25677777777643 3
Q ss_pred CHHHHHHH---HHh----CCCCCeEecCCCCCCCHHHHHHHH---hcCCc-CCeEEccCCCCCCHHHHHHHHhcC----C
Q 012207 342 TDEELSFV---VQS----HKELRKLDITCCRKITYASINSIT---KTCTS-LTSLRMECCKLVSWEAFVLIGQQC----Q 406 (468)
Q Consensus 342 ~~~~l~~~---~~~----~~~L~~L~l~~~~~~~~~~~~~~~---~~~~~-L~~L~l~~~~~~~~~~~~~~~~~~----~ 406 (468)
...+...+ ++. ..++++|.+.+|. ++......+. ...+. +.++++.. +.+.+.+...+.+.+ +
T Consensus 185 ~~~g~~~l~~~l~~~~~~~~~le~L~L~~~~-~t~~~c~~l~~~l~~~~~~~~el~l~~-n~l~d~g~~~L~~~l~~~~~ 262 (478)
T KOG4308|consen 185 IELGLLVLSQALESAASPLSSLETLKLSRCG-VTSSSCALLDEVLASGESLLRELDLAS-NKLGDVGVEKLLPCLSVLSE 262 (478)
T ss_pred chhhhHHHhhhhhhhhcccccHHHHhhhhcC-cChHHHHHHHHHHhccchhhHHHHHHh-cCcchHHHHHHHHHhcccch
Confidence 33333222 222 3468888888876 4444443332 23444 56677765 556766666555443 3
Q ss_pred CCCEEEccCCCCChhhHHhcc----cCCCCCEEeeCCCCccCHHHHHHHH
Q 012207 407 YLEELDITENEVNDEGLKSIS----RCSKLSSLKLGICSNITDEGLKHVG 452 (468)
Q Consensus 407 ~L~~L~l~~~~~~~~~~~~l~----~~~~L~~L~l~~~~~l~~~~~~~~~ 452 (468)
.+++++++.|.+++.+...+. .++.++.+.+++| .+.+.+.....
T Consensus 263 ~l~~l~l~~nsi~~~~~~~L~~~l~~~~~l~~l~l~~n-~l~~~~~~~~~ 311 (478)
T KOG4308|consen 263 TLRVLDLSRNSITEKGVRDLAEVLVSCRQLEELSLSNN-PLTDYGVELLL 311 (478)
T ss_pred hhhhhhhhcCCccccchHHHHHHHhhhHHHHHhhcccC-ccccHHHHHHH
Confidence 458888888888877666654 4678888888888 66665555443
|
|
| >PRK15386 type III secretion protein GogB; Provisional | Back alignment and domain information |
|---|
Probab=96.86 E-value=0.0019 Score=58.54 Aligned_cols=139 Identities=20% Similarity=0.230 Sum_probs=67.7
Q ss_pred HhcCCccceEeecCCCCCchhHHHHhhcCC-CCCeeEecCCcCChhHHHHHHHhCCCCCeEecccCCCCCHHHHHHHHHh
Q 012207 274 IKGADYLQQLILAYSFWVSADLSKCLHNFP-MLQSIKFEDCPVARSGIKAIGNWHGSLKELSLSKCSGVTDEELSFVVQS 352 (468)
Q Consensus 274 ~~~~~~L~~L~l~~~~~~~~~~~~~l~~~~-~L~~L~l~~~~~~~~~~~~l~~~~~~L~~L~l~~~~~~~~~~l~~~~~~ 352 (468)
+..+.++++|++++| .+.. ++ .+| +|++|.+.+|.-....+..+ .++|++|.+++|..+.. -
T Consensus 48 ~~~~~~l~~L~Is~c-~L~s-LP----~LP~sLtsL~Lsnc~nLtsLP~~L---P~nLe~L~Ls~Cs~L~s--------L 110 (426)
T PRK15386 48 IEEARASGRLYIKDC-DIES-LP----VLPNELTEITIENCNNLTTLPGSI---PEGLEKLTVCHCPEISG--------L 110 (426)
T ss_pred HHHhcCCCEEEeCCC-CCcc-cC----CCCCCCcEEEccCCCCcccCCchh---hhhhhheEccCcccccc--------c
Confidence 344577778887776 2221 11 233 57777777764322222222 24677777777644431 1
Q ss_pred CCCCCeEecCCCCCCCHHHHHHHHhcCCcCCeEEccCCCCCCHHHHHHHHhcCCCCCEEEccCCCCChhhHHhcccCCCC
Q 012207 353 HKELRKLDITCCRKITYASINSITKTCTSLTSLRMECCKLVSWEAFVLIGQQCQYLEELDITENEVNDEGLKSISRCSKL 432 (468)
Q Consensus 353 ~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L 432 (468)
.++|+.|.+.++. ... +.. -.++|+.|.+.++........... --++|+.|++++|...... ..+ -.+|
T Consensus 111 P~sLe~L~L~~n~-~~~--L~~---LPssLk~L~I~~~n~~~~~~lp~~--LPsSLk~L~Is~c~~i~LP-~~L--P~SL 179 (426)
T PRK15386 111 PESVRSLEIKGSA-TDS--IKN---VPNGLTSLSINSYNPENQARIDNL--ISPSLKTLSLTGCSNIILP-EKL--PESL 179 (426)
T ss_pred ccccceEEeCCCC-Ccc--ccc---CcchHhheeccccccccccccccc--cCCcccEEEecCCCcccCc-ccc--cccC
Confidence 2467777765432 111 111 124666776643221111111100 1156888888776543211 112 1477
Q ss_pred CEEeeCCC
Q 012207 433 SSLKLGIC 440 (468)
Q Consensus 433 ~~L~l~~~ 440 (468)
+.|.++.+
T Consensus 180 k~L~ls~n 187 (426)
T PRK15386 180 QSITLHIE 187 (426)
T ss_pred cEEEeccc
Confidence 88887665
|
|
| >KOG4308 consensus LRR-containing protein [Function unknown] | Back alignment and domain information |
|---|
Probab=96.84 E-value=0.00033 Score=65.70 Aligned_cols=145 Identities=23% Similarity=0.336 Sum_probs=89.2
Q ss_pred HHhhcCCCCCeeEecCCcCChhHHHHHHH-------hCCCCCeEecccCCCCCHHHHHH---HHHhCCC-CCeEecCCCC
Q 012207 297 KCLHNFPMLQSIKFEDCPVARSGIKAIGN-------WHGSLKELSLSKCSGVTDEELSF---VVQSHKE-LRKLDITCCR 365 (468)
Q Consensus 297 ~~l~~~~~L~~L~l~~~~~~~~~~~~l~~-------~~~~L~~L~l~~~~~~~~~~l~~---~~~~~~~-L~~L~l~~~~ 365 (468)
..+.....++.+++..|.+...+...+.+ ...++++|.+.+| .++...... .+...+. +..|++..|.
T Consensus 166 ~~L~~~~~l~~l~l~~n~l~~~g~~~l~~~l~~~~~~~~~le~L~L~~~-~~t~~~c~~l~~~l~~~~~~~~el~l~~n~ 244 (478)
T KOG4308|consen 166 AVLEKNEHLTELDLSLNGLIELGLLVLSQALESAASPLSSLETLKLSRC-GVTSSSCALLDEVLASGESLLRELDLASNK 244 (478)
T ss_pred HHHhcccchhHHHHHhcccchhhhHHHhhhhhhhhcccccHHHHhhhhc-CcChHHHHHHHHHHhccchhhHHHHHHhcC
Confidence 33444455555555555544333322221 3457888999886 444443333 3344455 6678888765
Q ss_pred CCCHHHHHHHHhcC----CcCCeEEccCCCCCCHHHHHHH---HhcCCCCCEEEccCCCCChhhHHhcc----cCCCCCE
Q 012207 366 KITYASINSITKTC----TSLTSLRMECCKLVSWEAFVLI---GQQCQYLEELDITENEVNDEGLKSIS----RCSKLSS 434 (468)
Q Consensus 366 ~~~~~~~~~~~~~~----~~L~~L~l~~~~~~~~~~~~~~---~~~~~~L~~L~l~~~~~~~~~~~~l~----~~~~L~~ 434 (468)
+.+.++..+...+ +.++++++..|. +++.+...+ ...++.++.+.++.|.+++.+...+. ....+..
T Consensus 245 -l~d~g~~~L~~~l~~~~~~l~~l~l~~ns-i~~~~~~~L~~~l~~~~~l~~l~l~~n~l~~~~~~~~~~~l~~~~~~~~ 322 (478)
T KOG4308|consen 245 -LGDVGVEKLLPCLSVLSETLRVLDLSRNS-ITEKGVRDLAEVLVSCRQLEELSLSNNPLTDYGVELLLEALERKTPLLH 322 (478)
T ss_pred -cchHHHHHHHHHhcccchhhhhhhhhcCC-ccccchHHHHHHHhhhHHHHHhhcccCccccHHHHHHHHHhhhcccchh
Confidence 7777666555443 566999999965 665554433 33778999999999999987766643 4556677
Q ss_pred EeeCCCCccC
Q 012207 435 LKLGICSNIT 444 (468)
Q Consensus 435 L~l~~~~~l~ 444 (468)
+.+.++...+
T Consensus 323 ~~l~~~~~~~ 332 (478)
T KOG4308|consen 323 LVLGGTGKGT 332 (478)
T ss_pred hhccccCccc
Confidence 7777663444
|
|
| >KOG1644 consensus U2-associated snRNP A' protein [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=96.83 E-value=0.00087 Score=53.36 Aligned_cols=105 Identities=18% Similarity=0.229 Sum_probs=71.1
Q ss_pred CCCCeEecCCCCCCCHHHHHHHHhcCCcCCeEEccCCCCCCHHHHHHHHhcCCCCCEEEccCCCCChhh-HHhcccCCCC
Q 012207 354 KELRKLDITCCRKITYASINSITKTCTSLTSLRMECCKLVSWEAFVLIGQQCQYLEELDITENEVNDEG-LKSISRCSKL 432 (468)
Q Consensus 354 ~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~-~~~l~~~~~L 432 (468)
-+...+++++|.......+ ..+++|..|.+++ +.++.-.- .+...+|+|+.|.+.+|.+.+.+ +..+..||+|
T Consensus 42 d~~d~iDLtdNdl~~l~~l----p~l~rL~tLll~n-NrIt~I~p-~L~~~~p~l~~L~LtnNsi~~l~dl~pLa~~p~L 115 (233)
T KOG1644|consen 42 DQFDAIDLTDNDLRKLDNL----PHLPRLHTLLLNN-NRITRIDP-DLDTFLPNLKTLILTNNSIQELGDLDPLASCPKL 115 (233)
T ss_pred cccceecccccchhhcccC----CCccccceEEecC-Ccceeecc-chhhhccccceEEecCcchhhhhhcchhccCCcc
Confidence 4677788887764333222 3678999999988 55664221 22224589999999998776532 3557789999
Q ss_pred CEEeeCCCCccCHH-HHHH-HHhcCcccCeeecCC
Q 012207 433 SSLKLGICSNITDE-GLKH-VGSTCSMLKELDLYR 465 (468)
Q Consensus 433 ~~L~l~~~~~l~~~-~~~~-~~~~~~~L~~L~l~~ 465 (468)
+.|.+-+| .+++. .... +...+|+|+.|+..+
T Consensus 116 ~~Ltll~N-pv~~k~~YR~yvl~klp~l~~LDF~k 149 (233)
T KOG1644|consen 116 EYLTLLGN-PVEHKKNYRLYVLYKLPSLRTLDFQK 149 (233)
T ss_pred ceeeecCC-chhcccCceeEEEEecCcceEeehhh
Confidence 99999999 55542 2222 334789999998754
|
|
| >KOG2739 consensus Leucine-rich acidic nuclear protein [Cell cycle control, cell division, chromosome partitioning; General function prediction only] | Back alignment and domain information |
|---|
Probab=96.80 E-value=0.00048 Score=57.20 Aligned_cols=41 Identities=24% Similarity=0.498 Sum_probs=17.4
Q ss_pred HHHhcCCCCCEEEccCCCCCh-hhHHhcccCCCCCEEeeCCC
Q 012207 400 LIGQQCQYLEELDITENEVND-EGLKSISRCSKLSSLKLGIC 440 (468)
Q Consensus 400 ~~~~~~~~L~~L~l~~~~~~~-~~~~~l~~~~~L~~L~l~~~ 440 (468)
.+.+.+|+|+++++++|.+.+ ..+..+..+.+|..|++.+|
T Consensus 85 vl~e~~P~l~~l~ls~Nki~~lstl~pl~~l~nL~~Ldl~n~ 126 (260)
T KOG2739|consen 85 VLAEKAPNLKVLNLSGNKIKDLSTLRPLKELENLKSLDLFNC 126 (260)
T ss_pred ehhhhCCceeEEeecCCccccccccchhhhhcchhhhhcccC
Confidence 333344555555555554443 11122223444455555555
|
|
| >smart00367 LRR_CC Leucine-rich repeat - CC (cysteine-containing) subfamily | Back alignment and domain information |
|---|
Probab=96.79 E-value=0.0019 Score=33.04 Aligned_cols=24 Identities=50% Similarity=0.920 Sum_probs=18.9
Q ss_pred CCCCCEEeeCCCCccCHHHHHHHH
Q 012207 429 CSKLSSLKLGICSNITDEGLKHVG 452 (468)
Q Consensus 429 ~~~L~~L~l~~~~~l~~~~~~~~~ 452 (468)
|++|+.|++++|++|+|.++..+.
T Consensus 1 c~~L~~L~l~~C~~itD~gl~~l~ 24 (26)
T smart00367 1 CPNLRELDLSGCTNITDEGLQALA 24 (26)
T ss_pred CCCCCEeCCCCCCCcCHHHHHHHh
Confidence 577888888888888888877665
|
|
| >PRK15386 type III secretion protein GogB; Provisional | Back alignment and domain information |
|---|
Probab=96.79 E-value=0.0027 Score=57.56 Aligned_cols=12 Identities=33% Similarity=0.667 Sum_probs=6.4
Q ss_pred CcCCeEEccCCC
Q 012207 380 TSLTSLRMECCK 391 (468)
Q Consensus 380 ~~L~~L~l~~~~ 391 (468)
++|++|.+++|.
T Consensus 156 sSLk~L~Is~c~ 167 (426)
T PRK15386 156 PSLKTLSLTGCS 167 (426)
T ss_pred CcccEEEecCCC
Confidence 355555555554
|
|
| >KOG2123 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=96.72 E-value=0.00028 Score=58.94 Aligned_cols=102 Identities=23% Similarity=0.313 Sum_probs=76.2
Q ss_pred CCCCCeEecCCCCCCCHHHHHHHHhcCCcCCeEEccCCCCCCHHHHHHHHhcCCCCCEEEccCCCCChh-hHHhcccCCC
Q 012207 353 HKELRKLDITCCRKITYASINSITKTCTSLTSLRMECCKLVSWEAFVLIGQQCQYLEELDITENEVNDE-GLKSISRCSK 431 (468)
Q Consensus 353 ~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~-~~~~l~~~~~ 431 (468)
+.+.++|+..+|. ++|..+ ...+|.|+.|.|+- ++|+ .+..+. .|++|++|.|..|.|.+. -+..+.++|+
T Consensus 18 l~~vkKLNcwg~~-L~DIsi---c~kMp~lEVLsLSv-NkIs--sL~pl~-rCtrLkElYLRkN~I~sldEL~YLknlps 89 (388)
T KOG2123|consen 18 LENVKKLNCWGCG-LDDISI---CEKMPLLEVLSLSV-NKIS--SLAPLQ-RCTRLKELYLRKNCIESLDELEYLKNLPS 89 (388)
T ss_pred HHHhhhhcccCCC-ccHHHH---HHhcccceeEEeec-cccc--cchhHH-HHHHHHHHHHHhcccccHHHHHHHhcCch
Confidence 3578889998887 776654 35789999999986 4454 233444 889999999999988763 3455778999
Q ss_pred CCEEeeCCCCccCHHHH---HHHHhcCcccCeee
Q 012207 432 LSSLKLGICSNITDEGL---KHVGSTCSMLKELD 462 (468)
Q Consensus 432 L~~L~l~~~~~l~~~~~---~~~~~~~~~L~~L~ 462 (468)
|+.|.|..|+.....+- ......+|+|++|+
T Consensus 90 Lr~LWL~ENPCc~~ag~nYR~~VLR~LPnLkKLD 123 (388)
T KOG2123|consen 90 LRTLWLDENPCCGEAGQNYRRKVLRVLPNLKKLD 123 (388)
T ss_pred hhhHhhccCCcccccchhHHHHHHHHcccchhcc
Confidence 99999999877765332 24455799999886
|
|
| >KOG1644 consensus U2-associated snRNP A' protein [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=96.71 E-value=0.00078 Score=53.62 Aligned_cols=63 Identities=22% Similarity=0.138 Sum_probs=32.8
Q ss_pred hCCCccEeeecccCCCCCCccccccCCCCCeeeecCCCCCChHHHHHHHhcCCCCCEEEccCCc
Q 012207 200 KCQEIRTLDLSYLPITEKCLPPVVKLQYLEDLVLEGCHGIDDDGLASVEYSCKSLKALNLSKCQ 263 (468)
Q Consensus 200 ~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~~L~~L~l~~~~ 263 (468)
.+++|..|.+.+|.++.....--.-+|+|+.|.+.+++-..-..+..+.. ||+|++|.+-+++
T Consensus 62 ~l~rL~tLll~nNrIt~I~p~L~~~~p~l~~L~LtnNsi~~l~dl~pLa~-~p~L~~Ltll~Np 124 (233)
T KOG1644|consen 62 HLPRLHTLLLNNNRITRIDPDLDTFLPNLKTLILTNNSIQELGDLDPLAS-CPKLEYLTLLGNP 124 (233)
T ss_pred CccccceEEecCCcceeeccchhhhccccceEEecCcchhhhhhcchhcc-CCccceeeecCCc
Confidence 45666666666665554332222235666666666633222223334444 6666666666554
|
|
| >smart00367 LRR_CC Leucine-rich repeat - CC (cysteine-containing) subfamily | Back alignment and domain information |
|---|
Probab=96.71 E-value=0.0023 Score=32.78 Aligned_cols=23 Identities=17% Similarity=0.355 Sum_probs=12.2
Q ss_pred CcCCeEEccCCCCCCHHHHHHHH
Q 012207 380 TSLTSLRMECCKLVSWEAFVLIG 402 (468)
Q Consensus 380 ~~L~~L~l~~~~~~~~~~~~~~~ 402 (468)
++|++|++++|..+++.++..+.
T Consensus 2 ~~L~~L~l~~C~~itD~gl~~l~ 24 (26)
T smart00367 2 PNLRELDLSGCTNITDEGLQALA 24 (26)
T ss_pred CCCCEeCCCCCCCcCHHHHHHHh
Confidence 45555555555555555555443
|
|
| >KOG2739 consensus Leucine-rich acidic nuclear protein [Cell cycle control, cell division, chromosome partitioning; General function prediction only] | Back alignment and domain information |
|---|
Probab=96.58 E-value=0.00094 Score=55.51 Aligned_cols=86 Identities=33% Similarity=0.309 Sum_probs=46.9
Q ss_pred CCCCcEEeccCCCCCChHHHHHHHhhCCCccEeeecccCCCC-CCccccccCCCCCeeeecCCCCCC-hHHHHHHHhcCC
Q 012207 175 CRKLKLLCLKWCIRVTDLGVELVALKCQEIRTLDLSYLPITE-KCLPPVVKLQYLEDLVLEGCHGID-DDGLASVEYSCK 252 (468)
Q Consensus 175 ~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~-~~~~~l~~~~~L~~L~l~~~~~~~-~~~~~~l~~~~~ 252 (468)
+|+|+.|.++.+..-...++..++..+|+|+++++++|.+.+ ..+..+..+++|..|++..|.... +..-..++..++
T Consensus 64 Lp~LkkL~lsdn~~~~~~~l~vl~e~~P~l~~l~ls~Nki~~lstl~pl~~l~nL~~Ldl~n~~~~~l~dyre~vf~ll~ 143 (260)
T KOG2739|consen 64 LPKLKKLELSDNYRRVSGGLEVLAEKAPNLKVLNLSGNKIKDLSTLRPLKELENLKSLDLFNCSVTNLDDYREKVFLLLP 143 (260)
T ss_pred cchhhhhcccCCcccccccceehhhhCCceeEEeecCCccccccccchhhhhcchhhhhcccCCccccccHHHHHHHHhh
Confidence 566777777665333334455555567888888888776652 333444456666677666654221 111222333356
Q ss_pred CCCEEEcc
Q 012207 253 SLKALNLS 260 (468)
Q Consensus 253 ~L~~L~l~ 260 (468)
+|+.|+-.
T Consensus 144 ~L~~LD~~ 151 (260)
T KOG2739|consen 144 SLKYLDGC 151 (260)
T ss_pred hhcccccc
Confidence 66666544
|
|
| >KOG4579 consensus Leucine-rich repeat (LRR) protein associated with apoptosis in muscle tissue [General function prediction only] | Back alignment and domain information |
|---|
Probab=96.57 E-value=0.0011 Score=49.25 Aligned_cols=87 Identities=20% Similarity=0.220 Sum_probs=59.3
Q ss_pred CCCCeEecCCCCCCCHHHHHHHHhcCCcCCeEEccCCCCCCHHHHHHHHhcCCCCCEEEccCCCCChhhHHhcccCCCCC
Q 012207 354 KELRKLDITCCRKITYASINSITKTCTSLTSLRMECCKLVSWEAFVLIGQQCQYLEELDITENEVNDEGLKSISRCSKLS 433 (468)
Q Consensus 354 ~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~ 433 (468)
..+..++++.|....-............|+..++++ +.+.+.. +.+...+|.++.|++.+|.+.+...+ ++.+|.|+
T Consensus 27 kE~h~ldLssc~lm~i~davy~l~~~~el~~i~ls~-N~fk~fp-~kft~kf~t~t~lNl~~neisdvPeE-~Aam~aLr 103 (177)
T KOG4579|consen 27 KELHFLDLSSCQLMYIADAVYMLSKGYELTKISLSD-NGFKKFP-KKFTIKFPTATTLNLANNEISDVPEE-LAAMPALR 103 (177)
T ss_pred HHhhhcccccchhhHHHHHHHHHhCCceEEEEeccc-chhhhCC-HHHhhccchhhhhhcchhhhhhchHH-HhhhHHhh
Confidence 457778888887443333444444566777778876 3233222 23333567889999999999987755 88899999
Q ss_pred EEeeCCCCccC
Q 012207 434 SLKLGICSNIT 444 (468)
Q Consensus 434 ~L~l~~~~~l~ 444 (468)
.|++..| .+.
T Consensus 104 ~lNl~~N-~l~ 113 (177)
T KOG4579|consen 104 SLNLRFN-PLN 113 (177)
T ss_pred hcccccC-ccc
Confidence 9999999 444
|
|
| >PLN03215 ascorbic acid mannose pathway regulator 1; Provisional | Back alignment and domain information |
|---|
Probab=96.27 E-value=0.0037 Score=55.97 Aligned_cols=39 Identities=26% Similarity=0.297 Sum_probs=35.7
Q ss_pred CCcccCcHHHHHHHHhhhcCChhhhhHHhhhhhhHHHHHH
Q 012207 10 NPFDFLSEEIIFNILDHLNNDPFARKSFSLTCRNFYSIES 49 (468)
Q Consensus 10 ~~~~~LP~eil~~I~~~~l~~~~~~~~~~~v~~~w~~~~~ 49 (468)
.+|+.||+|++..|.. .|+...|+++.+.|||.||..+.
T Consensus 2 ~~Ws~Lp~dll~~i~~-~l~~~~d~~~~~~vC~sWr~a~~ 40 (373)
T PLN03215 2 ADWSTLPEELLHMIAG-RLFSNVELKRFRSICRSWRSSVS 40 (373)
T ss_pred CChhhCCHHHHHHHHh-hCCcHHHHHHHHhhhhhHHHhcc
Confidence 4699999999999999 99778999999999999999754
|
|
| >KOG4579 consensus Leucine-rich repeat (LRR) protein associated with apoptosis in muscle tissue [General function prediction only] | Back alignment and domain information |
|---|
Probab=96.17 E-value=0.0025 Score=47.48 Aligned_cols=126 Identities=19% Similarity=0.154 Sum_probs=83.6
Q ss_pred CCCeEecccCCCCCHHHHHHHHHhCCCCCeEecCCCCCCCHHHHHHHHhcCCcCCeEEccCCCCCCHHHHHHHHhcCCCC
Q 012207 329 SLKELSLSKCSGVTDEELSFVVQSHKELRKLDITCCRKITYASINSITKTCTSLTSLRMECCKLVSWEAFVLIGQQCQYL 408 (468)
Q Consensus 329 ~L~~L~l~~~~~~~~~~l~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L 408 (468)
.+..++++.|.-..-......+.....|+..++++|. +.+. ...+...+|.++.|++.+ +.+.+-... ++ .+|.|
T Consensus 28 E~h~ldLssc~lm~i~davy~l~~~~el~~i~ls~N~-fk~f-p~kft~kf~t~t~lNl~~-neisdvPeE-~A-am~aL 102 (177)
T KOG4579|consen 28 ELHFLDLSSCQLMYIADAVYMLSKGYELTKISLSDNG-FKKF-PKKFTIKFPTATTLNLAN-NEISDVPEE-LA-AMPAL 102 (177)
T ss_pred HhhhcccccchhhHHHHHHHHHhCCceEEEEecccch-hhhC-CHHHhhccchhhhhhcch-hhhhhchHH-Hh-hhHHh
Confidence 5667788887543222234444556789999999875 3322 245556788999999988 556654444 55 88999
Q ss_pred CEEEccCCCCChhhHHhcccCCCCCEEeeCCCCccCHHHHHHHHhcCcccCee
Q 012207 409 EELDITENEVNDEGLKSISRCSKLSSLKLGICSNITDEGLKHVGSTCSMLKEL 461 (468)
Q Consensus 409 ~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~~L~~L 461 (468)
+.|+++.|.+.... ..+..+.++-.|+..++ .+.......+....|.|..+
T Consensus 103 r~lNl~~N~l~~~p-~vi~~L~~l~~Lds~~n-a~~eid~dl~~s~~~al~~l 153 (177)
T KOG4579|consen 103 RSLNLRFNPLNAEP-RVIAPLIKLDMLDSPEN-ARAEIDVDLFYSSLPALIKL 153 (177)
T ss_pred hhcccccCccccch-HHHHHHHhHHHhcCCCC-ccccCcHHHhccccHHHHHh
Confidence 99999999888764 45555788888888888 55544444444445544443
|
|
| >KOG0531 consensus Protein phosphatase 1, regulatory subunit, and related proteins [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=95.98 E-value=0.00053 Score=64.24 Aligned_cols=106 Identities=23% Similarity=0.207 Sum_probs=61.7
Q ss_pred hCCCccEeeecccCCCCCCccc-cccCCCCCeeeecCCCCCChHHHHHHHhcCCCCCEEEccCCcccChhhHHHHHhcCC
Q 012207 200 KCQEIRTLDLSYLPITEKCLPP-VVKLQYLEDLVLEGCHGIDDDGLASVEYSCKSLKALNLSKCQNISHVGLSSLIKGAD 278 (468)
Q Consensus 200 ~~~~L~~L~l~~~~~~~~~~~~-l~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~ 278 (468)
.+.+|+.|++.++.+. .+.. +..+++|++|++++ +.++... .+.. ++.|+.|++.++......+ +..++
T Consensus 93 ~~~~l~~l~l~~n~i~--~i~~~l~~~~~L~~L~ls~-N~I~~i~--~l~~-l~~L~~L~l~~N~i~~~~~----~~~l~ 162 (414)
T KOG0531|consen 93 KLKSLEALDLYDNKIE--KIENLLSSLVNLQVLDLSF-NKITKLE--GLST-LTLLKELNLSGNLISDISG----LESLK 162 (414)
T ss_pred cccceeeeeccccchh--hcccchhhhhcchheeccc-ccccccc--chhh-ccchhhheeccCcchhccC----Cccch
Confidence 5678888888887664 2333 56688888888888 4454322 2333 5568888888776322222 12256
Q ss_pred ccceEeecCCCCCchhHHHHhhcCCCCCeeEecCCcCC
Q 012207 279 YLQQLILAYSFWVSADLSKCLHNFPMLQSIKFEDCPVA 316 (468)
Q Consensus 279 ~L~~L~l~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~ 316 (468)
.|+.++++++....-.... +..+.+++.+.+.++.+.
T Consensus 163 ~L~~l~l~~n~i~~ie~~~-~~~~~~l~~l~l~~n~i~ 199 (414)
T KOG0531|consen 163 SLKLLDLSYNRIVDIENDE-LSELISLEELDLGGNSIR 199 (414)
T ss_pred hhhcccCCcchhhhhhhhh-hhhccchHHHhccCCchh
Confidence 6666777665322111101 456666777777766544
|
|
| >KOG2997 consensus F-box protein FBX9 [General function prediction only] | Back alignment and domain information |
|---|
Probab=95.73 E-value=0.0095 Score=50.88 Aligned_cols=41 Identities=24% Similarity=0.508 Sum_probs=33.2
Q ss_pred CcccCcHHHHHHHHhhhcC---ChhhhhHHhhhhhhHHHHHHhh
Q 012207 11 PFDFLSEEIIFNILDHLNN---DPFARKSFSLTCRNFYSIESRH 51 (468)
Q Consensus 11 ~~~~LP~eil~~I~~~~l~---~~~~~~~~~~v~~~w~~~~~~~ 51 (468)
.|..|||||+..||..-.+ |.+++-++++|||.|+..++..
T Consensus 106 ~~~~LPdEvLm~I~~~vv~~~~d~rsL~~~s~vCr~F~~~~R~~ 149 (366)
T KOG2997|consen 106 SISVLPDEVLMRIFRWVVSSLLDLRSLEQLSLVCRGFYKCARDP 149 (366)
T ss_pred hhhhCCHHHHHHHHHHHHhhhcchhhHHHhHhhHHHHHHHHcCh
Confidence 4688999999999984222 4689999999999999876543
|
|
| >PF13516 LRR_6: Leucine Rich repeat; PDB: 3RGZ_A 3RJ0_A 3RIZ_A 3RGX_A 1DFJ_I 2BNH_A 3VQ1_A 3VQ2_A 2Z64_A 2OMX_A | Back alignment and domain information |
|---|
Probab=95.51 E-value=0.007 Score=30.24 Aligned_cols=19 Identities=42% Similarity=0.566 Sum_probs=7.3
Q ss_pred CCCCEEeeCCCCccCHHHHH
Q 012207 430 SKLSSLKLGICSNITDEGLK 449 (468)
Q Consensus 430 ~~L~~L~l~~~~~l~~~~~~ 449 (468)
++|+.|+|++| .|++.++.
T Consensus 2 ~~L~~L~l~~n-~i~~~g~~ 20 (24)
T PF13516_consen 2 PNLETLDLSNN-QITDEGAS 20 (24)
T ss_dssp TT-SEEE-TSS-BEHHHHHH
T ss_pred CCCCEEEccCC-cCCHHHHH
Confidence 34444444444 34444433
|
... |
| >KOG0281 consensus Beta-TrCP (transducin repeats containing)/Slimb proteins [Function unknown] | Back alignment and domain information |
|---|
Probab=95.37 E-value=0.012 Score=50.66 Aligned_cols=41 Identities=20% Similarity=0.288 Sum_probs=36.5
Q ss_pred CCCcccCc----HHHHHHHHhhhcCChhhhhHHhhhhhhHHHHHHhh
Q 012207 9 SNPFDFLS----EEIIFNILDHLNNDPFARKSFSLTCRNFYSIESRH 51 (468)
Q Consensus 9 ~~~~~~LP----~eil~~I~~~~l~~~~~~~~~~~v~~~w~~~~~~~ 51 (468)
.+.+..|| ++|-..||+ |+. ..++..|.+|||+|+++....
T Consensus 72 rDFi~~lP~~gl~hi~e~ils-yld-~~sLc~celv~k~W~r~l~dg 116 (499)
T KOG0281|consen 72 RDFITALPEQGLDHIAENILS-YLD-ALSLCACELVCKEWKRVLSDG 116 (499)
T ss_pred HHHHHhcccccHHHHHHHHHH-hcc-hhhhhHHHHHHHHHHHHhccc
Confidence 35788999 999999999 995 999999999999999987654
|
|
| >PF13516 LRR_6: Leucine Rich repeat; PDB: 3RGZ_A 3RJ0_A 3RIZ_A 3RGX_A 1DFJ_I 2BNH_A 3VQ1_A 3VQ2_A 2Z64_A 2OMX_A | Back alignment and domain information |
|---|
Probab=95.10 E-value=0.026 Score=28.13 Aligned_cols=23 Identities=35% Similarity=0.666 Sum_probs=17.8
Q ss_pred CCCCCEEEccCCCCChhhHHhcc
Q 012207 405 CQYLEELDITENEVNDEGLKSIS 427 (468)
Q Consensus 405 ~~~L~~L~l~~~~~~~~~~~~l~ 427 (468)
+++|++|+|++|.+++.++..++
T Consensus 1 ~~~L~~L~l~~n~i~~~g~~~l~ 23 (24)
T PF13516_consen 1 NPNLETLDLSNNQITDEGASALA 23 (24)
T ss_dssp -TT-SEEE-TSSBEHHHHHHHHH
T ss_pred CCCCCEEEccCCcCCHHHHHHhC
Confidence 57899999999999999888765
|
... |
| >KOG0531 consensus Protein phosphatase 1, regulatory subunit, and related proteins [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=94.91 E-value=0.01 Score=55.67 Aligned_cols=106 Identities=23% Similarity=0.232 Sum_probs=70.0
Q ss_pred hCCCCCeEecccCCCCCHHHHHHHHHhCCCCCeEecCCCCCCCHHHHHHHHhcCCcCCeEEccCCCCCCHHHHHHHHhcC
Q 012207 326 WHGSLKELSLSKCSGVTDEELSFVVQSHKELRKLDITCCRKITYASINSITKTCTSLTSLRMECCKLVSWEAFVLIGQQC 405 (468)
Q Consensus 326 ~~~~L~~L~l~~~~~~~~~~l~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~ 405 (468)
.+.+|+.|++.+ +.+.. +...+..+++|+.|++++|.-.+..++. .++.|+.|++.++. ++. +..+. .+
T Consensus 93 ~~~~l~~l~l~~-n~i~~--i~~~l~~~~~L~~L~ls~N~I~~i~~l~----~l~~L~~L~l~~N~-i~~--~~~~~-~l 161 (414)
T KOG0531|consen 93 KLKSLEALDLYD-NKIEK--IENLLSSLVNLQVLDLSFNKITKLEGLS----TLTLLKELNLSGNL-ISD--ISGLE-SL 161 (414)
T ss_pred cccceeeeeccc-cchhh--cccchhhhhcchheeccccccccccchh----hccchhhheeccCc-chh--ccCCc-cc
Confidence 467888888887 34432 2332556789999999987633333332 45668889888844 332 22222 36
Q ss_pred CCCCEEEccCCCCChhhH-HhcccCCCCCEEeeCCCCccC
Q 012207 406 QYLEELDITENEVNDEGL-KSISRCSKLSSLKLGICSNIT 444 (468)
Q Consensus 406 ~~L~~L~l~~~~~~~~~~-~~l~~~~~L~~L~l~~~~~l~ 444 (468)
++|+.+++++|.+.+... . +..+.+++.+.+.+| .+.
T Consensus 162 ~~L~~l~l~~n~i~~ie~~~-~~~~~~l~~l~l~~n-~i~ 199 (414)
T KOG0531|consen 162 KSLKLLDLSYNRIVDIENDE-LSELISLEELDLGGN-SIR 199 (414)
T ss_pred hhhhcccCCcchhhhhhhhh-hhhccchHHHhccCC-chh
Confidence 888899999888877644 2 456888888999888 554
|
|
| >KOG0532 consensus Leucine-rich repeat (LRR) protein, contains calponin homology domain [Cytoskeleton] | Back alignment and domain information |
|---|
Probab=93.68 E-value=0.0086 Score=55.68 Aligned_cols=32 Identities=22% Similarity=0.218 Sum_probs=17.3
Q ss_pred CCEEEccCCCCChhhHHhcccCCCCCEEeeCCC
Q 012207 408 LEELDITENEVNDEGLKSISRCSKLSSLKLGIC 440 (468)
Q Consensus 408 L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~ 440 (468)
|..||++.|.++... ..+.++..|++|-|.+|
T Consensus 213 Li~lDfScNkis~iP-v~fr~m~~Lq~l~LenN 244 (722)
T KOG0532|consen 213 LIRLDFSCNKISYLP-VDFRKMRHLQVLQLENN 244 (722)
T ss_pred eeeeecccCceeecc-hhhhhhhhheeeeeccC
Confidence 555555555555543 33445555555555555
|
|
| >PF13013 F-box-like_2: F-box-like domain | Back alignment and domain information |
|---|
Probab=93.59 E-value=0.11 Score=37.47 Aligned_cols=30 Identities=30% Similarity=0.248 Sum_probs=26.0
Q ss_pred CcccCcHHHHHHHHhhhcCChhhhhHHhhhhh
Q 012207 11 PFDFLSEEIIFNILDHLNNDPFARKSFSLTCR 42 (468)
Q Consensus 11 ~~~~LP~eil~~I~~~~l~~~~~~~~~~~v~~ 42 (468)
.+.+||+||+..||. +.. ..+...+...|+
T Consensus 21 tl~DLP~ELl~~I~~-~C~-~~~l~~l~~~~~ 50 (109)
T PF13013_consen 21 TLLDLPWELLQLIFD-YCN-DPILLALSRTCR 50 (109)
T ss_pred chhhChHHHHHHHHh-hcC-cHHHHHHHHHHH
Confidence 478899999999999 886 778878888877
|
|
| >KOG0532 consensus Leucine-rich repeat (LRR) protein, contains calponin homology domain [Cytoskeleton] | Back alignment and domain information |
|---|
Probab=92.50 E-value=0.0036 Score=58.06 Aligned_cols=125 Identities=18% Similarity=0.143 Sum_probs=77.7
Q ss_pred CCCCeEecccCCCCCHHHHHHHHHhCCCCCeEecCCCCCCCHHHHHHHHhcCCcCCeEEccCCCCCCHHHHHHHHhcCCC
Q 012207 328 GSLKELSLSKCSGVTDEELSFVVQSHKELRKLDITCCRKITYASINSITKTCTSLTSLRMECCKLVSWEAFVLIGQQCQY 407 (468)
Q Consensus 328 ~~L~~L~l~~~~~~~~~~l~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~ 407 (468)
..|..++++.+ .++. ++.-+-.+| |+.|-+++|. ++... .-.+..+.|..|+.+.|...+. ...+. .+.+
T Consensus 121 ~~lt~l~ls~N-qlS~--lp~~lC~lp-Lkvli~sNNk-l~~lp--~~ig~~~tl~~ld~s~nei~sl--psql~-~l~s 190 (722)
T KOG0532|consen 121 EALTFLDLSSN-QLSH--LPDGLCDLP-LKVLIVSNNK-LTSLP--EEIGLLPTLAHLDVSKNEIQSL--PSQLG-YLTS 190 (722)
T ss_pred hHHHHhhhccc-hhhc--CChhhhcCc-ceeEEEecCc-cccCC--cccccchhHHHhhhhhhhhhhc--hHHhh-hHHH
Confidence 45555666542 2221 222222344 7777777665 33221 1112467788888887653221 12222 6678
Q ss_pred CCEEEccCCCCChhhHHhcccCCCCCEEeeCCCCccCHHHHHHHHhcCcccCeeecCCCC
Q 012207 408 LEELDITENEVNDEGLKSISRCSKLSSLKLGICSNITDEGLKHVGSTCSMLKELDLYRFS 467 (468)
Q Consensus 408 L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~~L~~L~l~~c~ 467 (468)
|+.|.+..|.+.+.. ..+. .-.|..|+++.| +|+. ++.-+..+..|++|.+.+||
T Consensus 191 lr~l~vrRn~l~~lp-~El~-~LpLi~lDfScN-kis~--iPv~fr~m~~Lq~l~LenNP 245 (722)
T KOG0532|consen 191 LRDLNVRRNHLEDLP-EELC-SLPLIRLDFSCN-KISY--LPVDFRKMRHLQVLQLENNP 245 (722)
T ss_pred HHHHHHhhhhhhhCC-HHHh-CCceeeeecccC-ceee--cchhhhhhhhheeeeeccCC
Confidence 899999888877754 4444 457899999999 8884 66555589999999999886
|
|
| >smart00368 LRR_RI Leucine rich repeat, ribonuclease inhibitor type | Back alignment and domain information |
|---|
Probab=92.24 E-value=0.22 Score=25.89 Aligned_cols=20 Identities=40% Similarity=0.792 Sum_probs=9.4
Q ss_pred CCCEEEccCCCCChhhHHhc
Q 012207 407 YLEELDITENEVNDEGLKSI 426 (468)
Q Consensus 407 ~L~~L~l~~~~~~~~~~~~l 426 (468)
+|++|+|++|.+++.+...+
T Consensus 3 ~L~~LdL~~N~i~~~G~~~L 22 (28)
T smart00368 3 SLRELDLSNNKLGDEGARAL 22 (28)
T ss_pred ccCEEECCCCCCCHHHHHHH
Confidence 34455555555544444433
|
|
| >smart00368 LRR_RI Leucine rich repeat, ribonuclease inhibitor type | Back alignment and domain information |
|---|
Probab=92.08 E-value=0.16 Score=26.43 Aligned_cols=24 Identities=25% Similarity=0.385 Sum_probs=16.7
Q ss_pred CCCCCEEeeCCCCccCHHHHHHHHh
Q 012207 429 CSKLSSLKLGICSNITDEGLKHVGS 453 (468)
Q Consensus 429 ~~~L~~L~l~~~~~l~~~~~~~~~~ 453 (468)
.++|++|+|++| .+++.+...+.+
T Consensus 1 n~~L~~LdL~~N-~i~~~G~~~L~~ 24 (28)
T smart00368 1 NPSLRELDLSNN-KLGDEGARALAE 24 (28)
T ss_pred CCccCEEECCCC-CCCHHHHHHHHH
Confidence 036778888888 788777776654
|
|
| >KOG3763 consensus mRNA export factor TAP/MEX67 [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=91.69 E-value=0.41 Score=44.91 Aligned_cols=41 Identities=15% Similarity=0.269 Sum_probs=23.6
Q ss_pred HHhCCCCCeEecCCCCCCCHHHHHHHHhcCCcCCeEEccCC
Q 012207 350 VQSHKELRKLDITCCRKITYASINSITKTCTSLTSLRMECC 390 (468)
Q Consensus 350 ~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~ 390 (468)
-.+.|.+.++++++|....-..+..++...|+|+.|+|++.
T Consensus 214 ~~n~p~i~sl~lsnNrL~~Ld~~sslsq~apklk~L~LS~N 254 (585)
T KOG3763|consen 214 EENFPEILSLSLSNNRLYHLDALSSLSQIAPKLKTLDLSHN 254 (585)
T ss_pred hcCCcceeeeecccchhhchhhhhHHHHhcchhheeecccc
Confidence 34456666666666654444445555555666666666653
|
|
| >PF13504 LRR_7: Leucine rich repeat; PDB: 3OJA_B 3G06_A 1OOK_G 1QYY_G 1SQ0_B 1P9A_G 1GWB_A 1P8V_A 1M0Z_A 1U0N_D | Back alignment and domain information |
|---|
Probab=90.06 E-value=0.24 Score=22.20 Aligned_cols=10 Identities=30% Similarity=0.348 Sum_probs=4.1
Q ss_pred CCCEEeeCCC
Q 012207 431 KLSSLKLGIC 440 (468)
Q Consensus 431 ~L~~L~l~~~ 440 (468)
+|+.|++++|
T Consensus 2 ~L~~L~l~~n 11 (17)
T PF13504_consen 2 NLRTLDLSNN 11 (17)
T ss_dssp T-SEEEETSS
T ss_pred ccCEEECCCC
Confidence 3444444444
|
... |
| >KOG3763 consensus mRNA export factor TAP/MEX67 [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=86.69 E-value=1.5 Score=41.33 Aligned_cols=91 Identities=23% Similarity=0.147 Sum_probs=61.5
Q ss_pred HHHHHhcCCCCCEEEccCCcccChhhHHHHHhcCCccceEeecCCCCCchhHHHHhh--cCCCCCeeEecCCcCCh----
Q 012207 244 LASVEYSCKSLKALNLSKCQNISHVGLSSLIKGADYLQQLILAYSFWVSADLSKCLH--NFPMLQSIKFEDCPVAR---- 317 (468)
Q Consensus 244 ~~~l~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~l~--~~~~L~~L~l~~~~~~~---- 317 (468)
+..+....|.+..++++++....-.++..+....|+|+.|+|+++....... ..+. +...|++|.+.||++.+
T Consensus 210 L~~~~~n~p~i~sl~lsnNrL~~Ld~~sslsq~apklk~L~LS~N~~~~~~~-~el~K~k~l~Leel~l~GNPlc~tf~~ 288 (585)
T KOG3763|consen 210 LKHIEENFPEILSLSLSNNRLYHLDALSSLSQIAPKLKTLDLSHNHSKISSE-SELDKLKGLPLEELVLEGNPLCTTFSD 288 (585)
T ss_pred HHHhhcCCcceeeeecccchhhchhhhhHHHHhcchhheeecccchhhhcch-hhhhhhcCCCHHHeeecCCccccchhh
Confidence 3555566788888888888776667777888888999999998862222111 1222 33468899999987543
Q ss_pred --hHHHHHHHhCCCCCeEec
Q 012207 318 --SGIKAIGNWHGSLKELSL 335 (468)
Q Consensus 318 --~~~~~l~~~~~~L~~L~l 335 (468)
+....+.+.+|+|..|+=
T Consensus 289 ~s~yv~~i~~~FPKL~~LDG 308 (585)
T KOG3763|consen 289 RSEYVSAIRELFPKLLRLDG 308 (585)
T ss_pred hHHHHHHHHHhcchheeecC
Confidence 334555567888877754
|
|
| >KOG0274 consensus Cdc4 and related F-box and WD-40 proteins [General function prediction only] | Back alignment and domain information |
|---|
Probab=86.42 E-value=0.29 Score=47.13 Aligned_cols=46 Identities=15% Similarity=0.269 Sum_probs=39.6
Q ss_pred CCCCcccCcHHHHHHHHhhhcCChhhhhHHhhhhhhHHHHHHhhhhhc
Q 012207 8 NSNPFDFLSEEIIFNILDHLNNDPFARKSFSLTCRNFYSIESRHRKIL 55 (468)
Q Consensus 8 ~~~~~~~LP~eil~~I~~~~l~~~~~~~~~~~v~~~w~~~~~~~~~~~ 55 (468)
..+.+..||.|+...||. ||+ .+++..++.||+.|+.++....-.+
T Consensus 104 ~~dfi~~lp~el~~~il~-~Ld-~~~l~~~~~v~~~w~~~~~~~~~~~ 149 (537)
T KOG0274|consen 104 QRDFLSLLPSELSLHILS-FLD-GRDLLAVRQVCRNWNKLLDDDKVWW 149 (537)
T ss_pred ccchhhcccchhcccccc-cCC-HHHhhhhhhhcchhhhhhhccchhh
Confidence 456889999999999999 997 8999999999999999877654433
|
|
| >PF00560 LRR_1: Leucine Rich Repeat; InterPro: IPR001611 Leucine-rich repeats (LRR) consist of 2-45 motifs of 20-30 amino acids in length that generally folds into an arc or horseshoe shape [] | Back alignment and domain information |
|---|
Probab=85.75 E-value=0.24 Score=23.98 Aligned_cols=12 Identities=42% Similarity=0.670 Sum_probs=5.8
Q ss_pred CCEEEccCCCCC
Q 012207 408 LEELDITENEVN 419 (468)
Q Consensus 408 L~~L~l~~~~~~ 419 (468)
|++|++++|.++
T Consensus 2 L~~Ldls~n~l~ 13 (22)
T PF00560_consen 2 LEYLDLSGNNLT 13 (22)
T ss_dssp ESEEEETSSEES
T ss_pred ccEEECCCCcCE
Confidence 444555554444
|
LRRs occur in proteins ranging from viruses to eukaryotes, and appear to provide a structural framework for the formation of protein-protein interactions [, ].Proteins containing LRRs include tyrosine kinase receptors, cell-adhesion molecules, virulence factors, and extracellular matrix-binding glycoproteins, and are involved in a variety of biological processes, including signal transduction, cell adhesion, DNA repair, recombination, transcription, RNA processing, disease resistance, apoptosis, and the immune response []. Sequence analyses of LRR proteins suggested the existence of several different subfamilies of LRRs. The significance of this classification is that repeats from different subfamilies never occur simultaneously and have most probably evolved independently. It is, however, now clear that all major classes of LRR have curved horseshoe structures with a parallel beta sheet on the concave side and mostly helical elements on the convex side. At least six families of LRR proteins, characterised by different lengths and consensus sequences of the repeats, have been identified. Eleven-residue segments of the LRRs (LxxLxLxxN/CxL), corresponding to the beta-strand and adjacent loop regions, are conserved in LRR proteins, whereas the remaining parts of the repeats (herein termed variable) may be very different. Despite the differences, each of the variable parts contains two half-turns at both ends and a "linear" segment (as the chain follows a linear path overall), usually formed by a helix, in the middle. The concave face and the adjacent loops are the most common protein interaction surfaces on LRR proteins. 3D structure of some LRR proteins-ligand complexes show that the concave surface of LRR domain is ideal for interaction with alpha-helix, thus supporting earlier conclusions that the elongated and curved LRR structure provides an outstanding framework for achieving diverse protein-protein interactions []. Molecular modeling suggests that the conserved pattern LxxLxL, which is shorter than the previously proposed LxxLxLxxN/CxL is sufficient to impart the characteristic horseshoe curvature to proteins with 20- to 30-residue repeats []. ; GO: 0005515 protein binding; PDB: 4ECO_B 2A0Z_A 3ULU_A 1ZIW_A 3ULV_A 1DCE_C 1LTX_A 3J0A_B 3A79_B 4FCG_A .... |
| >PF13306 LRR_5: Leucine rich repeats (6 copies); PDB: 3ZYJ_A 3V47_B 3V44_A 3ZYN_A 3ZYO_A 3SB4_A | Back alignment and domain information |
|---|
Probab=84.84 E-value=0.12 Score=39.25 Aligned_cols=10 Identities=30% Similarity=0.624 Sum_probs=3.1
Q ss_pred CCCCcEEEcc
Q 012207 124 CRFLTEIDLS 133 (468)
Q Consensus 124 ~~~L~~L~l~ 133 (468)
|++|+.+.+.
T Consensus 11 ~~~l~~i~~~ 20 (129)
T PF13306_consen 11 CSNLESITFP 20 (129)
T ss_dssp -TT--EEEET
T ss_pred CCCCCEEEEC
Confidence 4444444443
|
|
| >PF09372 PRANC: PRANC domain; InterPro: IPR018272 This presumed domain is found at the C terminus of a variety of Pox virus proteins | Back alignment and domain information |
|---|
Probab=82.34 E-value=1.2 Score=31.69 Aligned_cols=26 Identities=27% Similarity=0.344 Sum_probs=22.5
Q ss_pred CCCcccCcHHHHHHHHhhhcCChhhhhH
Q 012207 9 SNPFDFLSEEIIFNILDHLNNDPFARKS 36 (468)
Q Consensus 9 ~~~~~~LP~eil~~I~~~~l~~~~~~~~ 36 (468)
.+.|..||.||...|++ +|+ ..|+..
T Consensus 69 ~~~w~~LP~EIk~~Il~-~L~-~~dL~~ 94 (97)
T PF09372_consen 69 NNYWNILPIEIKYKILE-YLS-NKDLKK 94 (97)
T ss_pred CCchhhCCHHHHHHHHH-cCC-HHHHHH
Confidence 36899999999999999 997 777754
|
The PRANC (Pox proteins Repeats of ANkyrin, C-terminal) domain is also found on its own in some proteins []. The function of this domain is unknown, but it appears to be related to the F-box domain and may play a similar role. |
| >smart00369 LRR_TYP Leucine-rich repeats, typical (most populated) subfamily | Back alignment and domain information |
|---|
Probab=81.63 E-value=1.7 Score=21.91 Aligned_cols=17 Identities=29% Similarity=0.483 Sum_probs=9.6
Q ss_pred CCCCEEEccCCCCChhh
Q 012207 406 QYLEELDITENEVNDEG 422 (468)
Q Consensus 406 ~~L~~L~l~~~~~~~~~ 422 (468)
++|+.|++++|.++...
T Consensus 2 ~~L~~L~L~~N~l~~lp 18 (26)
T smart00369 2 PNLRELDLSNNQLSSLP 18 (26)
T ss_pred CCCCEEECCCCcCCcCC
Confidence 45666666666555543
|
|
| >smart00370 LRR Leucine-rich repeats, outliers | Back alignment and domain information |
|---|
Probab=81.63 E-value=1.7 Score=21.91 Aligned_cols=17 Identities=29% Similarity=0.483 Sum_probs=9.6
Q ss_pred CCCCEEEccCCCCChhh
Q 012207 406 QYLEELDITENEVNDEG 422 (468)
Q Consensus 406 ~~L~~L~l~~~~~~~~~ 422 (468)
++|+.|++++|.++...
T Consensus 2 ~~L~~L~L~~N~l~~lp 18 (26)
T smart00370 2 PNLRELDLSNNQLSSLP 18 (26)
T ss_pred CCCCEEECCCCcCCcCC
Confidence 45666666666555543
|
|
| >PF13306 LRR_5: Leucine rich repeats (6 copies); PDB: 3ZYJ_A 3V47_B 3V44_A 3ZYN_A 3ZYO_A 3SB4_A | Back alignment and domain information |
|---|
Probab=80.46 E-value=0.99 Score=34.14 Aligned_cols=9 Identities=44% Similarity=1.054 Sum_probs=3.1
Q ss_pred CCCCCEEEc
Q 012207 251 CKSLKALNL 259 (468)
Q Consensus 251 ~~~L~~L~l 259 (468)
+++++.+.+
T Consensus 57 ~~~l~~i~~ 65 (129)
T PF13306_consen 57 CKSLESITF 65 (129)
T ss_dssp -TT-EEEEE
T ss_pred ccccccccc
Confidence 334444444
|
|
Homologous Structure Templates
Structure Templates Detected by BLAST
Original result of BLAST against Protein Data Bank
| ID | Alignment Graph | Length |
Definition |
E-value | |
| Query | 468 | ||||
| 2p1m_B | 594 | Tir1-ask1 Complex Structure Length = 594 | 3e-06 |
| >pdb|2P1M|B Chain B, Tir1-ask1 Complex Structure Length = 594 | Back alignment and structure |
|
Structure Templates Detected by RPS-BLAST
Original result of RPS-BLAST against PDB70 database
| >2p1m_B Transport inhibitor response 1 protein; F-BOX, leucine rich repeat, signaling protein; HET: IHP; 1.80A {Arabidopsis thaliana} PDB: 2p1n_B* 2p1o_B* 2p1p_B* 2p1q_B* 3c6n_B* 3c6o_B* 3c6p_B* Length = 594 | Back alignment and structure |
|---|
Score = 206 bits (525), Expect = 3e-60
Identities = 101/486 (20%), Positives = 193/486 (39%), Gaps = 43/486 (8%)
Query: 15 LSEEIIFNILDHLNNDPFARKSFSLTCRNFYSIESRHRK--ILKPLCAETLSRTSARYPF 72
EE++ ++ + R S SL C+++Y IE R+ + A + + R+P
Sbjct: 9 FPEEVLEHVFSFIQ-LDKDRNSVSLVCKSWYEIERWCRRKVFIGNCYAVSPATVIRRFPK 67
Query: 73 ITQLDLSLCPRANDDALS-----------IVSSSSWKLTLRSINLSRSRLFTKVGLSSLT 121
+ ++L P D L I + SS L I L R + T L +
Sbjct: 68 VRSVELKGKPHFADFNLVPDGWGGYVYPWIEAMSSSYTWLEEIRLKRMVV-TDDCLELIA 126
Query: 122 VNCRFLTEIDLSNGTEMGDAAAAAIAEA-KNLERLWLARCKL--ITDLGIGRIAACCRKL 178
+ + + LS+ AAIA +NL+ L L + ++ + L
Sbjct: 127 KSFKNFKVLVLSSCEGFSTDGLAAIAATCRNLKELDLRESDVDDVSGHWLSHFPDTYTSL 186
Query: 179 KLLCLKWC-IRVTDLGVELVALKCQEIRTLDLSYLPITEKCLPPVVKLQYLEDLVLEGC- 236
L + V+ +E + +C +++L L+ EK + + LE+L G
Sbjct: 187 VSLNISCLASEVSFSALERLVTRCPNLKSLKLNRAVPLEKLATLLQRAPQLEELGTGGYT 246
Query: 237 HGIDDDGLASVEYSCKSLKAL-NLSKCQNISHVGLSSLIKGADYLQQLILAYSFWVSADL 295
+ D + + + K L LS + L ++ L L L+Y+ S DL
Sbjct: 247 AEVRPDVYSGLSVALSGCKELRCLSGFWDAVPAYLPAVYSVCSRLTTLNLSYATVQSYDL 306
Query: 296 SKCLHNFPMLQSIKFEDCPVARSGIKAIGNWHGSLKELSLSK--------CSGVTDEELS 347
K L P LQ + D + +G++ + + L+EL + +T++ L
Sbjct: 307 VKLLCQCPKLQRLWVLDY-IEDAGLEVLASTCKDLRELRVFPSEPFVMEPNVALTEQGLV 365
Query: 348 FVVQSHKELRKLDITCCRKITYASINSITKTCTSLTSLRMECCKLVSW---------EAF 398
V +L + + CR++T A++ +I + ++T R+ + + F
Sbjct: 366 SVSMGCPKLESV-LYFCRQMTNAALITIARNRPNMTRFRLCIIEPKAPDYLTLEPLDIGF 424
Query: 399 VLIGQQCQYLEELDITENEVNDEGLKSISR-CSKLSSLKLGICSNITDEGLKHVGSTCSM 457
I + C+ L L ++ + D+ + I K+ L + + +D G+ HV S C
Sbjct: 425 GAIVEHCKDLRRLSLSGL-LTDKVFEYIGTYAKKMEMLSVA-FAGDSDLGMHHVLSGCDS 482
Query: 458 LKELDL 463
L++L++
Sbjct: 483 LRKLEI 488
|
| >2p1m_B Transport inhibitor response 1 protein; F-BOX, leucine rich repeat, signaling protein; HET: IHP; 1.80A {Arabidopsis thaliana} PDB: 2p1n_B* 2p1o_B* 2p1p_B* 2p1q_B* 3c6n_B* 3c6o_B* 3c6p_B* Length = 594 | Back alignment and structure |
|---|
Score = 143 bits (361), Expect = 3e-37
Identities = 73/402 (18%), Positives = 132/402 (32%), Gaps = 36/402 (8%)
Query: 71 PFITQLDLSLCPRANDDALSIVSSSSWKLTLRSINLS-RSRLFTKVGLSSLTVNCRFLTE 129
+ +LDL + + +L S+N+S + + L L C L
Sbjct: 156 RNLKELDLRESDVDDVSGHWLSHFPDTYTSLVSLNISCLASEVSFSALERLVTRCPNLKS 215
Query: 130 IDLSNGTEMGDAAAAAIAEAKNLERLWLARCKLITDLGI--GRIAACCRKLKLLCLKWCI 187
+ L+ + A + A LE L + G A +L CL
Sbjct: 216 LKLN-RAVPLEKLATLLQRAPQLEELGTGGYTAEVRPDVYSGLSVALSGCKELRCLSGFW 274
Query: 188 RVTDLGVELVALKCQEIRTLDLSYLPITEKCLPPVVK-LQYLEDLVLEGCHGIDDDGLAS 246
+ V C + TL+LSY + L ++ L+ L + I+D GL
Sbjct: 275 DAVPAYLPAVYSVCSRLTTLNLSYATVQSYDLVKLLCQCPKLQRLWV--LDYIEDAGLEV 332
Query: 247 VEYSCKSLKALNLSKCQ--------NISHVGLSSLIKGADYLQQLILAYSFWVSADLSKC 298
+ +CK L+ L + + ++ GL S+ G L+ ++ +A L
Sbjct: 333 LASTCKDLRELRVFPSEPFVMEPNVALTEQGLVSVSMGCPKLESVLYFCRQMTNAALITI 392
Query: 299 LHNFPMLQSIKFEDCPVARSGIKAIGNWHGSLKELSLSKCSGVTDEELSFVVQSHKELRK 358
N P + + D +V+ K+LR+
Sbjct: 393 ARNRPNMTRFRLCIIEPKAP----------------DYLTLEPLDIGFGAIVEHCKDLRR 436
Query: 359 LDITCCRKITYASINSITKTCTSLTSLRMECCKLVSWEAFVLIGQQCQYLEELDITENEV 418
L ++ +T I + L + S + C L +L+I +
Sbjct: 437 LSLSGL--LTDKVFEYIGTYAKKMEMLSVAFAG-DSDLGMHHVLSGCDSLRKLEIRDCPF 493
Query: 419 NDEGLKSI-SRCSKLSSLKLGICSNITDEGLKHVGSTCSMLK 459
D+ L + S+ + SL + CS ++ K +G L
Sbjct: 494 GDKALLANASKLETMRSLWMSSCS-VSFGACKLLGQKMPKLN 534
|
| >2p1m_B Transport inhibitor response 1 protein; F-BOX, leucine rich repeat, signaling protein; HET: IHP; 1.80A {Arabidopsis thaliana} PDB: 2p1n_B* 2p1o_B* 2p1p_B* 2p1q_B* 3c6n_B* 3c6o_B* 3c6p_B* Length = 594 | Back alignment and structure |
|---|
Score = 129 bits (325), Expect = 2e-32
Identities = 72/400 (18%), Positives = 145/400 (36%), Gaps = 36/400 (9%)
Query: 61 ETLSRTSARYPFITQLDLSLCPRA-NDDALSIVSSSSWKLTLRSINLSRSRLFTKVGLSS 119
LS Y + L++S + AL + + L+S+ L+R+ L++
Sbjct: 174 HWLSHFPDTYTSLVSLNISCLASEVSFSALERLVTRC--PNLKSLKLNRAVPLE--KLAT 229
Query: 120 LTVNCRFLTEIDLSNGTEMGDAA--AAAIAEAKNLERLW-LARCKLITDLGIGRIAACCR 176
L L E+ T + + L L+ + + + C
Sbjct: 230 LLQRAPQLEELGTGGYTAEVRPDVYSGLSVALSGCKELRCLSGFWDAVPAYLPAVYSVCS 289
Query: 177 KLKLLCLKWCIRVTDLGVELVALKCQEIRTLDLSYLPITEKCLPPVV----KLQYL---- 228
+L L L + V + + +C +++ L + I + L + L+ L
Sbjct: 290 RLTTLNLSYA-TVQSYDLVKLLCQCPKLQRLWVLDY-IEDAGLEVLASTCKDLRELRVFP 347
Query: 229 -EDLVLEGCHGIDDDGLASVEYSCKSLKALNLSKCQNISHVGLSSLIKGADYLQQLILAY 287
E V+E + + GL SV C L+++ L C+ +++ L ++ + + + L
Sbjct: 348 SEPFVMEPNVALTEQGLVSVSMGCPKLESV-LYFCRQMTNAALITIARNRPNMTRFRLCI 406
Query: 288 SFWVSAD----------LSKCLHNFPMLQSIKFEDCPVARSGIKAIGNWHGSLKELSLSK 337
+ D + + L+ + + + IG + ++ LS++
Sbjct: 407 IEPKAPDYLTLEPLDIGFGAIVEHCKDLRRLSLSGL-LTDKVFEYIGTYAKKMEMLSVAF 465
Query: 338 CSGVTDEELSFVVQSHKELRKLDITCCRKITYASINSITKTCTSLTSLRMECCKLVSWEA 397
G +D + V+ LRKL+I C A + + ++ SL M C VS+ A
Sbjct: 466 A-GDSDLGMHHVLSGCDSLRKLEIRDCPFGDKALL-ANASKLETMRSLWMSSCS-VSFGA 522
Query: 398 FVLIGQQCQYLEELDITEN--EVNDEGLKSISRCSKLSSL 435
L+GQ+ L I E + + R ++
Sbjct: 523 CKLLGQKMPKLNVEVIDERGAPDSRPESCPVERVFIYRTV 562
|
| >2p1m_B Transport inhibitor response 1 protein; F-BOX, leucine rich repeat, signaling protein; HET: IHP; 1.80A {Arabidopsis thaliana} PDB: 2p1n_B* 2p1o_B* 2p1p_B* 2p1q_B* 3c6n_B* 3c6o_B* 3c6p_B* Length = 594 | Back alignment and structure |
|---|
Score = 108 bits (272), Expect = 2e-25
Identities = 54/305 (17%), Positives = 109/305 (35%), Gaps = 29/305 (9%)
Query: 76 LDLSLCPRANDDALSIVSSSSWKLTLRSINLSRSRLFTKVGLSSLTVNCRFLTEIDLSNG 135
LS A L V S L ++NLS + + L L C L + + +
Sbjct: 268 RCLSGFWDAVPAYLPAVYSVC--SRLTTLNLSYATV-QSYDLVKLLCQCPKLQRLWVLDY 324
Query: 136 TEMGDAAAAAIAEA-KNLERLWLARCK--------LITDLGIGRIAACCRKLKLLCLKWC 186
+ DA +A K+L L + + +T+ G+ ++ C KL+ + L +C
Sbjct: 325 --IEDAGLEVLASTCKDLRELRVFPSEPFVMEPNVALTEQGLVSVSMGCPKLESV-LYFC 381
Query: 187 IRVTDLGVELVALKCQEIRTLDLSYLP----------ITEKCLPPVVK-LQYLEDLVLEG 235
++T+ + +A + L + + +V+ + L L L G
Sbjct: 382 RQMTNAALITIARNRPNMTRFRLCIIEPKAPDYLTLEPLDIGFGAIVEHCKDLRRLSLSG 441
Query: 236 CHGIDDDGLASVEYSCKSLKALNLSKCQNISHVGLSSLIKGADYLQQLILAYSFWVSADL 295
+ D + K ++ L+++ S +G+ ++ G D L++L + + L
Sbjct: 442 L--LTDKVFEYIGTYAKKMEMLSVAFA-GDSDLGMHHVLSGCDSLRKLEIRDCPFGDKAL 498
Query: 296 SKCLHNFPMLQSIKFEDCPVARSGIKAIGNWHGSLKELSLSKCSGVTDEELSFVVQSHKE 355
++S+ C V+ K +G L + + S V+
Sbjct: 499 LANASKLETMRSLWMSSCSVSFGACKLLGQKMPKLNVEVIDERGAPDSRPESCPVERVFI 558
Query: 356 LRKLD 360
R +
Sbjct: 559 YRTVA 563
|
| >2p1m_B Transport inhibitor response 1 protein; F-BOX, leucine rich repeat, signaling protein; HET: IHP; 1.80A {Arabidopsis thaliana} PDB: 2p1n_B* 2p1o_B* 2p1p_B* 2p1q_B* 3c6n_B* 3c6o_B* 3c6p_B* Length = 594 | Back alignment and structure |
|---|
Score = 66.8 bits (163), Expect = 6e-12
Identities = 23/140 (16%), Positives = 51/140 (36%), Gaps = 17/140 (12%)
Query: 329 SLKELSLSKCSGVTDEELSFVVQSHKELRKLDITCCRKITYASINSITKTCTSLTSLRME 388
+++ + C V+ + ++ ++R +++ ++ +
Sbjct: 44 CRRKVFIGNCYAVSPATV---IRRFPKVRSVELKGKPHFADFNLVPDGWGGYVYPWIE-- 98
Query: 389 CCKLVSWEAFVLIGQQCQYLEELDITENEVNDEGLKSISR-CSKLSSLKLGICSNITDEG 447
+ +LEE+ + V D+ L+ I++ L L C + +G
Sbjct: 99 -----------AMSSSYTWLEEIRLKRMVVTDDCLELIAKSFKNFKVLVLSSCEGFSTDG 147
Query: 448 LKHVGSTCSMLKELDLYRFS 467
L + +TC LKELDL
Sbjct: 148 LAAIAATCRNLKELDLRESD 167
|
| >3ogk_B Coronatine-insensitive protein 1; leucine rich repeat, ubiquitin ligase, SCF, protein binding; HET: OGK; 2.80A {Arabidopsis thaliana} PDB: 3ogl_B* 3ogm_B* Length = 592 | Back alignment and structure |
|---|
Score = 195 bits (497), Expect = 3e-56
Identities = 86/484 (17%), Positives = 164/484 (33%), Gaps = 71/484 (14%)
Query: 6 KKNSNPFDFLSEEIIFNILDHLNNDPFARKSFSLTCRNFYSIESRHRK--ILKPLCAETL 63
K+ +++I ++ ++ DP R S SL CR ++ I+S R+ + T
Sbjct: 7 KRCKLSCVATVDDVIEQVMTYIT-DPKDRDSASLVCRRWFKIDSETREHVTMALCYTATP 65
Query: 64 SRTSARYPFITQLDLSLCPRANDDALSIVSSSSWKLTLRSINLSRSRLFTKVGLSSLTVN 123
R S R+P + L L PRA L + ++ ++ N
Sbjct: 66 DRLSRRFPNLRSLKLKGKPRAAMFNL---------------IPENWGGYVTPWVTEISNN 110
Query: 124 CRFLTEIDLSNGTEMGDAAAAAIAEA--KNLERLWLARCKLITDLGIGRIAACCRKLKLL 181
R L + + D +A+A +LE L L +C T G+ I CRK+K L
Sbjct: 111 LRQLKSVHFR-RMIVSDLDLDRLAKARADDLETLKLDKCSGFTTDGLLSIVTHCRKIKTL 169
Query: 182 CLKWCIRVTDLGVELVAL--KCQEIRTLDLSYLPITEKCLPPVVKLQYLEDLVLEGCHGI 239
++ G L L + L+ I
Sbjct: 170 LMEESSFSEKDGKWLHELAQHNTSLEVLNFYMT----------------------EFAKI 207
Query: 240 DDDGLASVEYSCKSLKALNLSKCQNISHVGLSSLIKGADYLQQLILAYSFWVSADLSKCL 299
L ++ +C+SL ++ + + + VG + L + +
Sbjct: 208 SPKDLETIARNCRSLVSVKVGDFEILELVGFFKAAANLEEFCGGSLNEDIGMPEKYMNLV 267
Query: 300 HNFPMLQSIKFEDC-PVARSGIKAIGNWHGSLKELSLSKCSGVTDEELSFVVQSHKELRK 358
+ + + + + + + +++L L T+ + ++Q L
Sbjct: 268 F----PRKLCRLGLSYMGPNEMPILFPFAAQIRKLDLLYALLETE-DHCTLIQKCPNLEV 322
Query: 359 LDITCCRKITYASINSITKTCTSLTSLRMECCK----------LVSWEAFVLIGQQCQYL 408
L+ I + + + C L LR+E LVS + + Q CQ L
Sbjct: 323 LETRNV--IGDRGLEVLAQYCKQLKRLRIERGADEQGMEDEEGLVSQRGLIALAQGCQEL 380
Query: 409 EELDITENEVNDEGLKSISR-CSKLSSLKLGICSNI-------TDEGLKHVGSTCSMLKE 460
E + + +++ +E L+SI L +L + D G++ + C L+
Sbjct: 381 EYMAVYVSDITNESLESIGTYLKNLCDFRLVLLDREERITDLPLDNGVRSLLIGCKKLRR 440
Query: 461 LDLY 464
Y
Sbjct: 441 FAFY 444
|
| >3ogk_B Coronatine-insensitive protein 1; leucine rich repeat, ubiquitin ligase, SCF, protein binding; HET: OGK; 2.80A {Arabidopsis thaliana} PDB: 3ogl_B* 3ogm_B* Length = 592 | Back alignment and structure |
|---|
Score = 152 bits (385), Expect = 2e-40
Identities = 69/442 (15%), Positives = 135/442 (30%), Gaps = 54/442 (12%)
Query: 71 PFITQLDLSLCPRANDDALSIVSSSSWKLTLRSINLSRSRLFTKVGLSSLTVNCRFLTEI 130
+ L L C D L + + K+ + S L L + L +
Sbjct: 138 DDLETLKLDKCSGFTTDGLLSIVTHCRKIKTLLMEESSFSEKDGKWLHELAQHNTSLEVL 197
Query: 131 DLS--NGTEMGDAAAAAIAEA-KNLERLWLARCKLITDLGIGRIAACCRKLKL------- 180
+ ++ IA ++L + + +++ +G + AA +
Sbjct: 198 NFYMTEFAKISPKDLETIARNCRSLVSVKVGDFEILELVGFFKAAANLEEFCGGSLNEDI 257
Query: 181 --------------LCLKWCIRVTDLGVELVALKCQEIRTLDLSYLP-ITEKCLPPVVKL 225
LC + + ++ +IR LDL Y TE + K
Sbjct: 258 GMPEKYMNLVFPRKLCRLGLSYMGPNEMPILFPFAAQIRKLDLLYALLETEDHCTLIQKC 317
Query: 226 QYLEDLVLEGCHGIDDDGLASVEYSCKSLKALNLSKCQN----------ISHVGLSSLIK 275
LE L I D GL + CK LK L + + + +S GL +L +
Sbjct: 318 PNLEVLETRNV--IGDRGLEVLAQYCKQLKRLRIERGADEQGMEDEEGLVSQRGLIALAQ 375
Query: 276 GADYLQQLILAYSFWVSADLSKCLHNFPMLQSIKFEDC--------PVARSGIKAIGNWH 327
G L+ + + S + L L + +G++++
Sbjct: 376 GCQELEYMAVYVSDITNESLESIGTYLKNLCDFRLVLLDREERITDLPLDNGVRSLLIGC 435
Query: 328 GSLKELSLS-KCSGVTDEELSFVVQSHKELRKLDITCCRKITYASINSITKTCTSLTSLR 386
L+ + + G+TD LS++ Q +R + + + + ++ C +L L
Sbjct: 436 KKLRRFAFYLRQGGLTDLGLSYIGQYSPNVRWMLLGYVG-ESDEGLMEFSRGCPNLQKLE 494
Query: 387 MECCKLVSWEAFVLIGQQCQYLEELDITENEVNDEGLKSISR---CSKLSSLKLGICSNI 443
M C S A + L L + + G + + + +
Sbjct: 495 MRGCC-FSERAIAAAVTKLPSLRYLWVQGYRASMTGQDLMQMARPYWNIELIPSRRVPEV 553
Query: 444 TDEGLKHVGSTCSMLKELDLYR 465
+G + Y
Sbjct: 554 NQQGEIREMEHP---AHILAYY 572
|
| >3ogk_B Coronatine-insensitive protein 1; leucine rich repeat, ubiquitin ligase, SCF, protein binding; HET: OGK; 2.80A {Arabidopsis thaliana} PDB: 3ogl_B* 3ogm_B* Length = 592 | Back alignment and structure |
|---|
Score = 95.8 bits (238), Expect = 3e-21
Identities = 34/237 (14%), Positives = 78/237 (32%), Gaps = 24/237 (10%)
Query: 71 PFITQLDLSLCPRANDDALSIVSSSSWKLT--------LRSINLSRSRLFTKVGLSSLTV 122
+ +L + S L L + + S + T L S+
Sbjct: 342 KQLKRLRIERGADEQGMEDEEGLVSQRGLIALAQGCQELEYMAVYVSDI-TNESLESIGT 400
Query: 123 NCRFLTEIDLSN--------GTEMGDAAAAAIAEAKNLERLWL-ARCKLITDLGIGRIAA 173
+ L + L + + + + K L R R +TDLG+ I
Sbjct: 401 YLKNLCDFRLVLLDREERITDLPLDNGVRSLLIGCKKLRRFAFYLRQGGLTDLGLSYIGQ 460
Query: 174 CCRKLKLLCLKWCIRVTDLGVELVALKCQEIRTLDLSYLPITEKCLPPVVK-LQYLEDLV 232
++ + L + +D G+ + C ++ L++ +E+ + V L L L
Sbjct: 461 YSPNVRWMLLGYV-GESDEGLMEFSRGCPNLQKLEMRGCCFSERAIAAAVTKLPSLRYLW 519
Query: 233 LEGCH-GIDDDGLASVEYSCKSLKALNLSKCQNISHVGLSSLIKGADYLQQLILAYS 288
++G + L + +++ + + ++ G ++ ++ YS
Sbjct: 520 VQGYRASMTGQDLMQMARPYWNIELIPSRRVPEVNQQGEIRE---MEHPAHILAYYS 573
|
| >3ogk_B Coronatine-insensitive protein 1; leucine rich repeat, ubiquitin ligase, SCF, protein binding; HET: OGK; 2.80A {Arabidopsis thaliana} PDB: 3ogl_B* 3ogm_B* Length = 592 | Back alignment and structure |
|---|
Score = 66.1 bits (161), Expect = 1e-11
Identities = 26/139 (18%), Positives = 51/139 (36%), Gaps = 18/139 (12%)
Query: 329 SLKELSLSKCSGVTDEELSFVVQSHKELRKLDITCCRKITYASINSITKTCTSLTSLRME 388
+ + ++++ C T + L + LR L + + ++ +L E
Sbjct: 51 TREHVTMALCYTATPDRL---SRRFPNLRSLKLKGKPRA-------------AMFNLIPE 94
Query: 389 CCKLVSWEAFVLIGQQCQYLEELDITENEVNDEGLKSI--SRCSKLSSLKLGICSNITDE 446
I + L+ + V+D L + +R L +LKL CS T +
Sbjct: 95 NWGGYVTPWVTEISNNLRQLKSVHFRRMIVSDLDLDRLAKARADDLETLKLDKCSGFTTD 154
Query: 447 GLKHVGSTCSMLKELDLYR 465
GL + + C +K L +
Sbjct: 155 GLLSIVTHCRKIKTLLMEE 173
|
| >2ast_B S-phase kinase-associated protein 2; SCF-substrate complex, LRR, cell cycle, protein turnover COM ligase-ligase inhibitor complex; HET: TPO; 2.30A {Homo sapiens} SCOP: a.158.1.1 c.10.1.3 PDB: 2ass_B 1fqv_A* 1fs2_A Length = 336 | Back alignment and structure |
|---|
Score = 128 bits (323), Expect = 1e-33
Identities = 58/278 (20%), Positives = 102/278 (36%), Gaps = 14/278 (5%)
Query: 4 KRKKNSNPFDFLSEEIIFNILDHLNNDPFARKSFSLTCRNFYSIESRHR--KILKPLCAE 61
+ +D L +E++ I L S C+ +Y + S + L
Sbjct: 1 RENFPGVSWDSLPDELLLGIFSCL--CLPELLKVSGVCKRWYRLASDESLWQTLDLTGKN 58
Query: 62 TLSRTSARYPFITQLDLSLCPRANDDALSIVSSSSWKLTLRSINLSRSRLFTKVGLSSLT 121
+ R + D L+ S ++ ++LS S + L +
Sbjct: 59 LHPDVTGRLLSQGVIAFRCPRSFMDQPLAEHFS---PFRVQHMDLSNSVI-EVSTLHGIL 114
Query: 122 VNCRFLTEIDLSNGTEMGDAAAAAIAEAKNLERLWLARCKLITDLGIGRIAACCRKLKLL 181
C L + L G + D +A+ NL RL L+ C ++ + + + C +L L
Sbjct: 115 SQCSKLQNLSLE-GLRLSDPIVNTLAKNSNLVRLNLSGCSGFSEFALQTLLSSCSRLDEL 173
Query: 182 CLKWCIRVTDLGVE-LVALKCQEIRTLDLSYLP--ITEKCLPPVVK-LQYLEDLVLEGCH 237
L WC T+ V+ VA + I L+LS + + L +V+ L L L
Sbjct: 174 NLSWCFDFTEKHVQVAVAHVSETITQLNLSGYRKNLQKSDLSTLVRRCPNLVHLDLSDSV 233
Query: 238 GIDDDGLASVEYSCKSLKALNLSKCQNISHVGLSSLIK 275
+ +D L+ L+LS+C +I L L +
Sbjct: 234 MLKNDCFQEFF-QLNYLQHLSLSRCYDIIPETLLELGE 270
|
| >2ast_B S-phase kinase-associated protein 2; SCF-substrate complex, LRR, cell cycle, protein turnover COM ligase-ligase inhibitor complex; HET: TPO; 2.30A {Homo sapiens} SCOP: a.158.1.1 c.10.1.3 PDB: 2ass_B 1fqv_A* 1fs2_A Length = 336 | Back alignment and structure |
|---|
Score = 113 bits (284), Expect = 3e-28
Identities = 46/298 (15%), Positives = 95/298 (31%), Gaps = 55/298 (18%)
Query: 159 RCKLITDLGIGRIAACCRKLKLLCLKWCIRVTDLGVELVALKCQEIRTLDLSYLPITEKC 218
RC +++ + L + + + + +C +++ L L L +++
Sbjct: 76 RCPRSFMDQPLAEHFSPFRVQHMDLSNSV-IEVSTLHGILSQCSKLQNLSLEGLRLSDPI 134
Query: 219 LPPVVKLQYLEDLVLEGCHGIDDDGLASVEYSCKSLKALNLSKCQNISHVGLSSLIKGAD 278
+ + K L L L GC G + L ++ SC L LNLS C + + + +
Sbjct: 135 VNTLAKNSNLVRLNLSGCSGFSEFALQTLLSSCSRLDELNLSWCFDFTEKHVQVAVA--- 191
Query: 279 YLQQLILAYSFWVSADLSKCLHNFPMLQSIKFEDCPVARSGIKAIGNWHGSLKELSLSKC 338
H + +
Sbjct: 192 ---------------------HVSETITQLNLSGY------------------------R 206
Query: 339 SGVTDEELSFVVQSHKELRKLDITCCRKITYASINSITKTCTSLTSLRMECCKLVSWEAF 398
+ +LS +V+ L LD++ + + L L + C + E
Sbjct: 207 KNLQKSDLSTLVRRCPNLVHLDLSDSVMLKNDCFQEFFQ-LNYLQHLSLSRCYDIIPETL 265
Query: 399 VLIGQQCQYLEELDITENEVNDEGLKSISRCSKLSSLKLGICSNITDEGLKHVGSTCS 456
+ +G + L+ L + V D L+ + L L++ CS+ T +G+ +
Sbjct: 266 LELG-EIPTLKTLQVF-GIVPDGTLQLLKEA--LPHLQIN-CSHFTTIARPTIGNKKN 318
|
| >2ast_B S-phase kinase-associated protein 2; SCF-substrate complex, LRR, cell cycle, protein turnover COM ligase-ligase inhibitor complex; HET: TPO; 2.30A {Homo sapiens} SCOP: a.158.1.1 c.10.1.3 PDB: 2ass_B 1fqv_A* 1fs2_A Length = 336 | Back alignment and structure |
|---|
Score = 96.1 bits (239), Expect = 4e-22
Identities = 38/217 (17%), Positives = 86/217 (39%), Gaps = 15/217 (6%)
Query: 61 ETLSRTSARYPFITQLDLSLCPRANDDALSIVSSSSWKLTLRSINLSRSRLFTKVGLSSL 120
TL ++ + L L R +D ++ ++ +S L +NLS F++ L +L
Sbjct: 108 STLHGILSQCSKLQNLSLEGL-RLSDPIVNTLAKNS---NLVRLNLSGCSGFSEFALQTL 163
Query: 121 TVNCRFLTEIDLSNGTEMGDAAAAAIAEA--KNLERLWLARC-KLITDLGIGRIAACCRK 177
+C L E++LS + + + + +L L+ K + + + C
Sbjct: 164 LSSCSRLDELNLSWCFDFTEKHVQVAVAHVSETITQLNLSGYRKNLQKSDLSTLVRRCPN 223
Query: 178 LKLLCLKWCIRVTDLGVELVALKCQEIRTLDLSYLP-ITEKCLPPVVKLQYLEDLVLEGC 236
L L L + + + + + ++ L LS I + L + ++ L+ L + G
Sbjct: 224 LVHLDLSDSVMLKNDCFQEFF-QLNYLQHLSLSRCYDIIPETLLELGEIPTLKTLQVFGI 282
Query: 237 HGIDDDGLASVEYSCKSLKALNLSKCQNISHVGLSSL 273
+ D L ++ + L+ C + + + ++
Sbjct: 283 --VPDGTLQLLKEALPHLQI----NCSHFTTIARPTI 313
|
| >2ast_B S-phase kinase-associated protein 2; SCF-substrate complex, LRR, cell cycle, protein turnover COM ligase-ligase inhibitor complex; HET: TPO; 2.30A {Homo sapiens} SCOP: a.158.1.1 c.10.1.3 PDB: 2ass_B 1fqv_A* 1fs2_A Length = 336 | Back alignment and structure |
|---|
Score = 88.8 bits (220), Expect = 1e-19
Identities = 39/231 (16%), Positives = 91/231 (39%), Gaps = 12/231 (5%)
Query: 244 LASVEYSCKSLKAL----NLSKCQNISHVGLSSLIKGADYLQQLILAYSFWVSADLSKCL 299
L V CK L +L + +++ L + G Q +I D
Sbjct: 29 LLKVSGVCKRWYRLASDESLWQTLDLTGKNLHPDVTGRLLSQGVIAFRCPRSFMDQPLAE 88
Query: 300 H-NFPMLQSIKFEDCPVARSGIKAIGNWHGSLKELSLSKCSGVTDEELSFVVQSHKELRK 358
H + +Q + + + S + I + L+ LSL ++D ++ + + + L +
Sbjct: 89 HFSPFRVQHMDLSNSVIEVSTLHGILSQCSKLQNLSLEGLR-LSDPIVNTLAK-NSNLVR 146
Query: 359 LDITCCRKITYASINSITKTCTSLTSLRMECCKLVSWEAF-VLIGQQCQYLEELDITE-- 415
L+++ C + ++ ++ +C+ L L + C + + V + + + +L+++
Sbjct: 147 LNLSGCSGFSEFALQTLLSSCSRLDELNLSWCFDFTEKHVQVAVAHVSETITQLNLSGYR 206
Query: 416 NEVNDEGLKSISR-CSKLSSLKLGICSNITDEGLKHVGSTCSMLKELDLYR 465
+ L ++ R C L L L + ++ + + L+ L L R
Sbjct: 207 KNLQKSDLSTLVRRCPNLVHLDLSDSVMLKNDCFQEFFQ-LNYLQHLSLSR 256
|
| >1z7x_W Ribonuclease inhibitor; leucine-rich repeat, enzyme- inhibitor complex, structural genomics, protein structure initiative, PSI, CESG; HET: CIT; 1.95A {Homo sapiens} SCOP: c.10.1.1 PDB: 2q4g_W* 2bex_A 1a4y_A 2bnh_A 1dfj_I Length = 461 | Back alignment and structure |
|---|
Score = 105 bits (265), Expect = 7e-25
Identities = 79/413 (19%), Positives = 160/413 (38%), Gaps = 58/413 (14%)
Query: 99 LTLRSINLSRSRLFTKVGLSSLTVNCRFLTEIDLSNGTEMGDAAAAAIAEA----KNLER 154
L ++S+++ L + + L + + L + + +A I+ A L
Sbjct: 3 LDIQSLDIQCEEL-SDARWAELLPLLQQCQVVRLDD-CGLTEARCKDISSALRVNPALAE 60
Query: 155 LWLARCKLITDLGIGRIAA----CCRKLKLLCLKWCIRVTDLGVELVA---LKCQEIRTL 207
L L + + D+G+ + K++ L L+ C +T G +++ ++ L
Sbjct: 61 LNLRSNE-LGDVGVHCVLQGLQTPSCKIQKLSLQNC-CLTGAGCGVLSSTLRTLPTLQEL 118
Query: 208 DLSYLPITEKCLPPVVKLQ-----YLEDLVLEGCHGIDDDG---LASVEYSCKSLKALNL 259
LS + + L + + LE L LE C + LASV + K L +
Sbjct: 119 HLSDNLLGDAGLQLLCEGLLDPQCRLEKLQLEYC-SLSAASCEPLASVLRAKPDFKELTV 177
Query: 260 SKCQNISHVGLSSLIKG----ADYLQQLILAY---SFWVSADLSKCLHNFPMLQSIKFED 312
S I+ G+ L +G L+ L L + DL + + L+ +
Sbjct: 178 SNND-INEAGVRVLCQGLKDSPCQLEALKLESCGVTSDNCRDLCGIVASKASLRELALGS 236
Query: 313 CPVARSGIKAIG----NWHGSLKELSLSKCSGVTDE---ELSFVVQSHKELRKLDITCCR 365
+ G+ + + L+ L + +C G+T + +L V+++ + L++L +
Sbjct: 237 NKLGDVGMAELCPGLLHPSSRLRTLWIWEC-GITAKGCGDLCRVLRAKESLKELSLAGN- 294
Query: 366 KITYASINSI----TKTCTSLTSLRMECCKLVSWEAFVLIG---QQCQYLEELDITENEV 418
++ + + L SL ++ C + Q ++L EL I+ N +
Sbjct: 295 ELGDEGARLLCETLLEPGCQLESLWVKSCSF-TAACCSHFSSVLAQNRFLLELQISNNRL 353
Query: 419 NDEGLKSISR-----CSKLSSLKLGICSNITDEGLKHVGS---TCSMLKELDL 463
D G++ + + S L L L C +++D + + L+ELDL
Sbjct: 354 EDAGVRELCQGLGQPGSVLRVLWLADC-DVSDSSCSSLAATLLANHSLRELDL 405
|
| >1z7x_W Ribonuclease inhibitor; leucine-rich repeat, enzyme- inhibitor complex, structural genomics, protein structure initiative, PSI, CESG; HET: CIT; 1.95A {Homo sapiens} SCOP: c.10.1.1 PDB: 2q4g_W* 2bex_A 1a4y_A 2bnh_A 1dfj_I Length = 461 | Back alignment and structure |
|---|
Score = 95.4 bits (238), Expect = 2e-21
Identities = 83/430 (19%), Positives = 155/430 (36%), Gaps = 59/430 (13%)
Query: 73 ITQLDLSLCPRANDDALSIVSSSSWKLTLRSINLSRSRLFTKVGLSSL-----TVNCRFL 127
+ L C I S+ L +NL + L VG+ + T +C+ +
Sbjct: 30 CQVVRLDDCGLTEARCKDISSALRVNPALAELNLRSNEL-GDVGVHCVLQGLQTPSCK-I 87
Query: 128 TEIDLSNGTEMGDAAAAAIAEA----KNLERLWLARCKLITDLGIGRIAA----CCRKLK 179
++ L N + A ++ L+ L L+ + D G+ + +L+
Sbjct: 88 QKLSLQN-CCLTGAGCGVLSSTLRTLPTLQELHLSDNL-LGDAGLQLLCEGLLDPQCRLE 145
Query: 180 LLCLKWCIRVTDLGVELVAL---KCQEIRTLDLSYLPITE---KCLPPVVKLQY--LEDL 231
L L++C ++ E +A + + L +S I E + L +K LE L
Sbjct: 146 KLQLEYC-SLSAASCEPLASVLRAKPDFKELTVSNNDINEAGVRVLCQGLKDSPCQLEAL 204
Query: 232 VLEGCHGIDDDG---LASVEYSCKSLKALNLSKCQNISHVGLSSLIKGADY----LQQLI 284
LE C G+ D L + S SL+ L L + + VG++ L G + L+ L
Sbjct: 205 KLESC-GVTSDNCRDLCGIVASKASLRELALGSNK-LGDVGMAELCPGLLHPSSRLRTLW 262
Query: 285 LAYSFWVSA---DLSKCLHNFPMLQSIKFEDCPVARSGIKAIG----NWHGSLKELSLSK 337
+ + DL + L L+ + + G + + L+ L +
Sbjct: 263 IWECGITAKGCGDLCRVLRAKESLKELSLAGNELGDEGARLLCETLLEPGCQLESLWVKS 322
Query: 338 CSGVTDE---ELSFVVQSHKELRKLDITCCRKITYASINSI----TKTCTSLTSLRMECC 390
CS T S V+ ++ L +L I+ ++ A + + + + L L + C
Sbjct: 323 CS-FTAACCSHFSSVLAQNRFLLELQISNN-RLEDAGVRELCQGLGQPGSVLRVLWLADC 380
Query: 391 KLVSWEAFVLIG--QQCQYLEELDITENEVNDEGLKSISR-----CSKLSSLKLGICSNI 443
+ L L ELD++ N + D G+ + L L L
Sbjct: 381 DVSDSSCSSLAATLLANHSLRELDLSNNCLGDAGILQLVESVRQPGCLLEQLVLYDI-YW 439
Query: 444 TDEGLKHVGS 453
++E + +
Sbjct: 440 SEEMEDRLQA 449
|
| >1z7x_W Ribonuclease inhibitor; leucine-rich repeat, enzyme- inhibitor complex, structural genomics, protein structure initiative, PSI, CESG; HET: CIT; 1.95A {Homo sapiens} SCOP: c.10.1.1 PDB: 2q4g_W* 2bex_A 1a4y_A 2bnh_A 1dfj_I Length = 461 | Back alignment and structure |
|---|
Score = 78.5 bits (194), Expect = 7e-16
Identities = 43/237 (18%), Positives = 96/237 (40%), Gaps = 28/237 (11%)
Query: 252 KSLKALNLSKCQNISHVGLSSLIKGADYLQQLILAY---SFWVSADLSKCLHNFPMLQSI 308
+++L++ + +S + L+ Q + L + D+S L P L +
Sbjct: 3 LDIQSLDIQCEE-LSDARWAELLPLLQQCQVVRLDDCGLTEARCKDISSALRVNPALAEL 61
Query: 309 KFEDCPVARSGIKAIG----NWHGSLKELSLSKCSGVTDE---ELSFVVQSHKELRKLDI 361
+ G+ + +++LSL C +T LS +++ L++L +
Sbjct: 62 NLRSNELGDVGVHCVLQGLQTPSCKIQKLSLQNCC-LTGAGCGVLSSTLRTLPTLQELHL 120
Query: 362 TCCRKITYASINSIT----KTCTSLTSLRMECCKL--VSWEAFVLIGQQCQYLEELDITE 415
+ + A + + L L++E C L S E + + +EL ++
Sbjct: 121 SDN-LLGDAGLQLLCEGLLDPQCRLEKLQLEYCSLSAASCEPLASVLRAKPDFKELTVSN 179
Query: 416 NEVNDEGLKSISRC-----SKLSSLKLGICSNITDEGLKHVGS---TCSMLKELDLY 464
N++N+ G++ + + +L +LKL C +T + + + + + L+EL L
Sbjct: 180 NDINEAGVRVLCQGLKDSPCQLEALKLESC-GVTSDNCRDLCGIVASKASLRELALG 235
|
| >1z7x_W Ribonuclease inhibitor; leucine-rich repeat, enzyme- inhibitor complex, structural genomics, protein structure initiative, PSI, CESG; HET: CIT; 1.95A {Homo sapiens} SCOP: c.10.1.1 PDB: 2q4g_W* 2bex_A 1a4y_A 2bnh_A 1dfj_I Length = 461 | Back alignment and structure |
|---|
Score = 54.2 bits (131), Expect = 4e-08
Identities = 39/210 (18%), Positives = 76/210 (36%), Gaps = 30/210 (14%)
Query: 73 ITQLDLSLCPRANDDALSIVSSSSWKLTLRSINLSRSRLFTKVGLSSL-----TVNCRFL 127
+ L + C + K +L+ ++L+ + L G L C+ L
Sbjct: 258 LRTLWIWECGITAKGCGDLCRVLRAKESLKELSLAGNEL-GDEGARLLCETLLEPGCQ-L 315
Query: 128 TEIDLSNGTEMGDAAAAAIAEA----KNLERLWLARCKLITDLGIGRIAA----CCRKLK 179
+ + + A + + + L L ++ + + D G+ + L+
Sbjct: 316 ESLWVKS-CSFTAACCSHFSSVLAQNRFLLELQISNNR-LEDAGVRELCQGLGQPGSVLR 373
Query: 180 LLCLKWCIRVTDLGVELVA---LKCQEIRTLDLSYLPITE---KCLPPVVKLQY--LEDL 231
+L L C V+D +A L +R LDLS + + L V+ LE L
Sbjct: 374 VLWLADC-DVSDSSCSSLAATLLANHSLRELDLSNNCLGDAGILQLVESVRQPGCLLEQL 432
Query: 232 VLEGCHGIDDDG---LASVEYSCKSLKALN 258
VL ++ L ++E SL+ ++
Sbjct: 433 VLYDI-YWSEEMEDRLQALEKDKPSLRVIS 461
|
| >3goz_A Leucine-rich repeat-containing protein; LEGL7, NESG, LGR148, structural genomics, PSI-2, protein structure initiative; 2.10A {Legionella pneumophila subsp} Length = 362 | Back alignment and structure |
|---|
Score = 82.8 bits (205), Expect = 2e-17
Identities = 52/385 (13%), Positives = 108/385 (28%), Gaps = 85/385 (22%)
Query: 116 GLSSLTVNCRFLTEIDLSNGTEMGDAAAAAIAEA-----KNLERLWLARCKLITDLGIGR 170
+ T +T +DLS + + + +A ++ L L+ +
Sbjct: 13 PVEEFTSIPHGVTSLDLSL-NNLYSISTVELIQAFANTPASVTSLNLSGNS-LGFKNSDE 70
Query: 171 IAA----CCRKLKLLCLKWCIRVTDLGVELVA----LKCQEIRTLDLSYLPITEKCLPPV 222
+ + L L ++ + + I LDL + + K
Sbjct: 71 LVQILAAIPANVTSLNLSGN-FLSYKSSDELVKTLAAIPFTITVLDLGWNDFSSKSSSEF 129
Query: 223 VKL-----QYLEDLVLEGCHGIDDDG---LASV-EYSCKSLKALNLSKCQNISHVGLSSL 273
+ + L L G + L + ++ +LNL ++
Sbjct: 130 KQAFSNLPASITSLNLRGND-LGIKSSDELIQILAAIPANVNSLNLRGNN-LASKNC--- 184
Query: 274 IKGADYLQQLILAYSFWVSADLSKCLHNFP-MLQSIKFEDCPVARSGIKAIG----NWHG 328
A+L+K L + P + S+ + + +
Sbjct: 185 -------------------AELAKFLASIPASVTSLDLSANLLGLKSYAELAYIFSSIPN 225
Query: 329 SLKELSLSKC--SGVTDEELSFVVQSHKELRKLDITCCRKITYASINSITKTCTSLTSLR 386
+ L+L G + E L + S K L+ + + + +++K
Sbjct: 226 HVVSLNLCLNCLHGPSLENLKLLKDSLKHLQTVYLDYDI------VKNMSK--------- 270
Query: 387 MECCKLVSWEAFVLIGQQCQYLEELDITENEVNDEGLKSISR-----CSKLSSLKLGICS 441
E CK + AF Q + +D E++ IS K L
Sbjct: 271 -EQCKALG-AAF----PNIQKIILVDKNGKEIHPSHSIPISNLIRELSGKADVPSLLNQC 324
Query: 442 NITDEGLKH---VGSTCSMLKELDL 463
I + + + L+E
Sbjct: 325 LIFAQKHQTNIEDLNIPDELRESIQ 349
|
| >3un9_A NLR family member X1; leucine rich repeat (LRR), antiviral signaling, MAVS, TRAF6, UQCRC2, immune system; 2.65A {Homo sapiens} Length = 372 | Back alignment and structure |
|---|
Score = 75.9 bits (187), Expect = 4e-15
Identities = 56/409 (13%), Positives = 110/409 (26%), Gaps = 95/409 (23%)
Query: 76 LDLSLCPRANDDALSIVSSSSWKLT---------LRSINLSRSRLFTKVGLSSLTVNCRF 126
L CP N DAL + KL ++ + S V
Sbjct: 15 LAQLGCPIKNLDALENAQAIKKKLGKLGRQVLPPSELLDHLFFHYEFQNQRFSAEVL-SS 73
Query: 127 LTEIDLSNGTEMGDAAAAAIAEA-----KNLERLWLARCKLITDLGIGRIAACCRKLKLL 181
L +++L+ G M +A L+ + LA C+ + G+ + + + L
Sbjct: 74 LRQLNLA-GVRMTPVKCTVVAAVLGSGRHALDEVNLASCQ-LDPAGLRTLLPVFLRARKL 131
Query: 182 CLKWCIRVTDLGVELVA--LKCQE--IRTLDLSYLPITEKCLPPVVKLQYLEDLVLEGCH 237
L+ + + + L + I TL LS P+T V +
Sbjct: 132 GLQLN-SLGPEACKDLRDLLLHDQCQITTLRLSNNPLTAAG----VAV------------ 174
Query: 238 GIDDDGLASVEYSCKSLKALNLSKCQNISHVGLSSLIKGADYLQQLILAYSFWVSADLSK 297
L S+ L+L + GL L +
Sbjct: 175 ------LMEGLAGNTSVTHLSLLHTG-LGDEGLELL----------------------AA 205
Query: 298 CLHNFPMLQSIKFEDCPVARSGIKAIGNW---HGSLKELSLSKCSGVTDE------ELSF 348
L LQ + + A+ H SL+ L L ++ E +L
Sbjct: 206 QLDRNRQLQELNVAYNGAGDTAALALARAAREHPSLELLHLYFN-ELSSEGRQVLRDLGG 264
Query: 349 VVQSHKELRKLDITCCRKITYASINSITKTCTSLTSLRMECCKLVSWEAFVLIGQQCQYL 408
+ + ++ +++ +L S Q+ L
Sbjct: 265 AAEGGARVVVSLTEGTA-VSEYWSVILSEVQRNLNSWDR------------ARVQRHLEL 311
Query: 409 EELDITENEVNDEGLKSISRCSK----LSSLKLGICSNITDEGLKHVGS 453
D+ ++ ++ + + +L + +
Sbjct: 312 LLRDLEDSRGATLNPWRKAQLLRVEGEVRALLEQLG-SSGSPSGSWSHP 359
|
| >3un9_A NLR family member X1; leucine rich repeat (LRR), antiviral signaling, MAVS, TRAF6, UQCRC2, immune system; 2.65A {Homo sapiens} Length = 372 | Back alignment and structure |
|---|
Score = 58.2 bits (141), Expect = 2e-09
Identities = 38/266 (14%), Positives = 76/266 (28%), Gaps = 51/266 (19%)
Query: 225 LQYLEDLVLEGCHGIDDDG---LASV-EYSCKSLKALNLSKCQNISHVGLSSLIKGADYL 280
L L L L G + +A+V +L +NL+ CQ + GL +L+
Sbjct: 71 LSSLRQLNLAGV-RMTPVKCTVVAAVLGSGRHALDEVNLASCQ-LDPAGLRTLLPVFLRA 128
Query: 281 QQLILAYSFWVSADLSKCLHNFPMLQSIKFEDCPVARSGIKAIG----NWHGSLKELSLS 336
++L L K + + + L LS
Sbjct: 129 RKL----------GLQLN----------SLGP-----EACKDLRDLLLHDQCQITTLRLS 163
Query: 337 KCSGVTDE---ELSFVVQSHKELRKLDITCCRKITYASINSIT---KTCTSLTSLRMECC 390
+T L + + + L + + + + L L +
Sbjct: 164 NNP-LTAAGVAVLMEGLAGNTSVTHLSLLHT-GLGDEGLELLAAQLDRNRQLQELNVAYN 221
Query: 391 KL--VSWEAFVLIGQQCQYLEELDITENEVNDEGLKSISRCSKLSS------LKLGICSN 442
+ A ++ LE L + NE++ EG + + + + L +
Sbjct: 222 GAGDTAALALARAAREHPSLELLHLYFNELSSEGRQVLRDLGGAAEGGARVVVSLTEGTA 281
Query: 443 ITDEGLKHVGSTCSMLKELDLYRFSS 468
+++ + L D R
Sbjct: 282 VSEYWSVILSEVQRNLNSWDRARVQR 307
|
| >2ca6_A RAN GTPase-activating protein 1; GAP, GTPase activation, hemihedral twinning, leucine-rich repeat protein, LRR, merohedral twinning; 2.2A {Schizosaccharomyces pombe} SCOP: c.10.1.2 PDB: 1k5g_C* 1k5d_C 1yrg_A Length = 386 | Back alignment and structure |
|---|
Score = 74.7 bits (184), Expect = 1e-14
Identities = 68/416 (16%), Positives = 125/416 (30%), Gaps = 112/416 (26%)
Query: 73 ITQLDLSLCPRANDDALSIVSSSSWKLTLRSINLSRSRLFTKVGLSSLTVNCRFLTEIDL 132
I L L +D S+ + L + EI L
Sbjct: 6 IEGKSLKLDAITTEDEKSVFAV------LL--------------------EDDSVKEIVL 39
Query: 133 SNGTEMGDAAAAAIAEA----KNLERLWLARCKLITDLGIGRIAACCRKLKLLCLKWCIR 188
S G +G AA ++E K+LE + D+ GR+ +
Sbjct: 40 S-GNTIGTEAARWLSENIASKKDLEIAEFS------DIFTGRVKDEIPE----------- 81
Query: 189 VTDLGVELVA---LKCQEIRTLDLSYLPITEKCLPPVVKLQYLEDLVLEGCHGIDDDGLA 245
+ L+ LKC ++ T+ LS + L
Sbjct: 82 ----ALRLLLQALLKCPKLHTVRLSDNAFGPTAQ----------------------EPLI 115
Query: 246 SVEYSCKSLKALNLSKCQNISHVGLSSLIKGADYLQQLILAYSFWVSADLSKCLHNFPML 305
L+ L L + + + A LQ+L + K N P L
Sbjct: 116 DFLSKHTPLEHLYLHNNG-LGPQAGAKI---ARALQELAVN----------KKAKNAPPL 161
Query: 306 QSIKFEDCPVARSGIKAIGN---WHGSLKELSLSKCSGVTDE----ELSFVVQSHKELRK 358
+SI + +K H L + + + G+ E L + +EL+
Sbjct: 162 RSIICGRNRLENGSMKEWAKTFQSHRLLHTVKMVQN-GIRPEGIEHLLLEGLAYCQELKV 220
Query: 359 LDITCCRKITYASINSIT---KTCTSLTSLRMECCKL----VSWEAFVLIGQQCQYLEEL 411
LD+ T+ +++ K+ +L L + C L + + L+ L
Sbjct: 221 LDLQDNT-FTHLGSSALAIALKSWPNLRELGLNDCLLSARGAAAVVDAFSKLENIGLQTL 279
Query: 412 DITENEVNDEGLKSISRC--SKLSSLK-LGICSN-ITDEGLKHVGSTCSMLKELDL 463
+ NE+ + ++++ K+ L L + N ++E V +
Sbjct: 280 RLQYNEIELDAVRTLKTVIDEKMPDLLFLELNGNRFSEED-DVVDEIREVFSTRGR 334
|
| >2ca6_A RAN GTPase-activating protein 1; GAP, GTPase activation, hemihedral twinning, leucine-rich repeat protein, LRR, merohedral twinning; 2.2A {Schizosaccharomyces pombe} SCOP: c.10.1.2 PDB: 1k5g_C* 1k5d_C 1yrg_A Length = 386 | Back alignment and structure |
|---|
Score = 70.9 bits (174), Expect = 2e-13
Identities = 55/392 (14%), Positives = 108/392 (27%), Gaps = 92/392 (23%)
Query: 99 LTLRSINLSRSRLFTKVGLSSLT---VNCRFLTEIDLSNGTEMGDAAAAAIAEA----KN 151
++ +L + T S+ + + EI LS G +G AA ++E K+
Sbjct: 4 FSIEGKSLKLDAI-TTEDEKSVFAVLLEDDSVKEIVLS-GNTIGTEAARWLSENIASKKD 61
Query: 152 LERLWLARCKLITDLGIGRIAAC---------CRKLKLLCLKWCIRVTDLGVELVA---L 199
LE + + A C KL + L E +
Sbjct: 62 LEIAEFSDIF-TGRVKDEIPEALRLLLQALLKCPKLHTVRLSDN-AFGPTAQEPLIDFLS 119
Query: 200 KCQEIRTLDLSYLPITEKC-------------LPPVVKLQYLEDLVLEGCHGIDDDG--- 243
K + L L + + L ++ +++
Sbjct: 120 KHTPLEHLYLHNNGLGPQAGAKIARALQELAVNKKAKNAPPLRSIICGRNR-LENGSMKE 178
Query: 244 LASVEYSCKSLKALNLSKCQNISHVGLSSLIKGADYLQQLILAYSFWVSADLSKCLHNFP 303
A S + L + + + I G+ L+ L+ C
Sbjct: 179 WAKTFQSHRLLHTVKMVQNG-IRPEGIEHLLLEG-----------------LAYC----Q 216
Query: 304 MLQSIKFEDCPVARSGIKAIGN---WHGSLKELSLSKCS----GVTDEELSFVVQSHKEL 356
L+ + +D G A+ +L+EL L+ C G +F + L
Sbjct: 217 ELKVLDLQDNTFTHLGSSALAIALKSWPNLRELGLNDCLLSARGAAAVVDAFSKLENIGL 276
Query: 357 RKLDITCCRKITYASINSITKTCTSLTSLRMECCKLVSWEAFVLIGQQCQYLEELDITEN 416
+ L + I ++ ++ I ++ L L++ N
Sbjct: 277 QTLRLQYNE-IELDAVRTLKTV----------------------IDEKMPDLLFLELNGN 313
Query: 417 EVNDEGLKSISRCSKLSSLKLGICSNITDEGL 448
++E S+ G + D
Sbjct: 314 RFSEEDDVVDEIREVFSTRGRGELDELDDMEE 345
|
| >3e4g_A ATP synthase subunit S, mitochondrial; leucine-rich repeat, CF0, hydrogen ION transport, inner membrane, ION transport, membrane, mitochondrion; 0.96A {Bos taurus} PDB: 3e3z_A 3dze_A 3e2j_A Length = 176 | Back alignment and structure |
|---|
Score = 61.4 bits (149), Expect = 2e-11
Identities = 35/172 (20%), Positives = 57/172 (33%), Gaps = 55/172 (31%)
Query: 198 ALKCQEIRTLDLSYLPITEKCLPPVVKLQYLEDLVLEGCHGIDDDGL---ASVEYSCKSL 254
L +I+ +D + I + LQY+E + L CH I+D L + +E KS+
Sbjct: 57 PLDKYKIQAIDATDSCIMSIGFDHMEGLQYVEKIRLCKCHYIEDGCLERLSQLENLQKSM 116
Query: 255 KALNLSKCQNISHVGLSSLIKGADYLQQLILAYSFWVSADLSKCLHNFPMLQSIKFEDCP 314
+ + C N++ G+ LH+F
Sbjct: 117 LEMEIISCGNVTDKGI--------------------------IALHHFR----------- 139
Query: 315 VARSGIKAIGNWHGSLKELSLSKCSGVTDEELSFVVQSHKELRKLDITCCRK 366
+LK L LS GV ++E V L L++ K
Sbjct: 140 --------------NLKYLFLSDLPGVKEKEKI-VQAFKTSLPSLELKLDLK 176
|
| >3e4g_A ATP synthase subunit S, mitochondrial; leucine-rich repeat, CF0, hydrogen ION transport, inner membrane, ION transport, membrane, mitochondrion; 0.96A {Bos taurus} PDB: 3e3z_A 3dze_A 3e2j_A Length = 176 | Back alignment and structure |
|---|
Score = 57.5 bits (139), Expect = 5e-10
Identities = 18/125 (14%), Positives = 43/125 (34%), Gaps = 7/125 (5%)
Query: 343 DEELSFVVQSHKELRKLDITCCRKITYASINSITKTCTSLTSLRMECCKLVSWEAFVLIG 402
L +++ +D T I + + + +R+ C + +
Sbjct: 50 YNHLPTGPLDKYKIQAIDATDSC-IMSIGFDHMEG-LQYVEKIRLCKCHYIEDGCLERLS 107
Query: 403 Q---QCQYLEELDITEN-EVNDEGLKSISRCSKLSSLKLGICSNITDEGLKHVGSTCSML 458
Q + + E++I V D+G+ ++ L L L + ++ + + L
Sbjct: 108 QLENLQKSMLEMEIISCGNVTDKGIIALHHFRNLKYLFLSDLPGVKEKEKIVQ-AFKTSL 166
Query: 459 KELDL 463
L+L
Sbjct: 167 PSLEL 171
|
| >3e4g_A ATP synthase subunit S, mitochondrial; leucine-rich repeat, CF0, hydrogen ION transport, inner membrane, ION transport, membrane, mitochondrion; 0.96A {Bos taurus} PDB: 3e3z_A 3dze_A 3e2j_A Length = 176 | Back alignment and structure |
|---|
Score = 57.5 bits (139), Expect = 5e-10
Identities = 21/122 (17%), Positives = 47/122 (38%), Gaps = 9/122 (7%)
Query: 83 RANDDALSIVSSSSWKLTLRSINLSRSRLFTKVGLSSLTVNCRFLTEIDLSNGTEMGDAA 142
+ + + L +K+ +I+ + S + + +++ +I L + D
Sbjct: 47 QKDYNHLPTGPLDKYKIQ--AIDATDSCIMSIG--FDHMEGLQYVEKIRLCKCHYIEDGC 102
Query: 143 AAAIAEAKN----LERLWLARCKLITDLGIGRIAACCRKLKLLCLKWCIRVTDLGVELVA 198
+++ +N + + + C +TD GI + R LK L L V + + A
Sbjct: 103 LERLSQLENLQKSMLEMEIISCGNVTDKGIIALHHF-RNLKYLFLSDLPGVKEKEKIVQA 161
Query: 199 LK 200
K
Sbjct: 162 FK 163
|
| >3e4g_A ATP synthase subunit S, mitochondrial; leucine-rich repeat, CF0, hydrogen ION transport, inner membrane, ION transport, membrane, mitochondrion; 0.96A {Bos taurus} PDB: 3e3z_A 3dze_A 3e2j_A Length = 176 | Back alignment and structure |
|---|
Score = 56.4 bits (136), Expect = 1e-09
Identities = 14/123 (11%), Positives = 40/123 (32%), Gaps = 24/123 (19%)
Query: 151 NLERLWLARCKLITDLGIGRIAACCRKLKLLCLKWCIRVTDLGVELVALKCQEIRTLDLS 210
++ + I +G + ++ + L C + D +E ++ ++
Sbjct: 62 KIQAIDATDSC-IMSIGF-DHMEGLQYVEKIRLCKCHYIEDGCLERLSQLENLQKS---- 115
Query: 211 YLPITEKCLPPVVKLQYLEDLVLEGCHGIDDDGLASVEYSCKSLKALNLSKCQNISHVGL 270
+ ++ + C + D G+ ++ + ++LK L LS +
Sbjct: 116 -----------------MLEMEIISCGNVTDKGIIAL-HHFRNLKYLFLSDLPGVKEKEK 157
Query: 271 SSL 273
Sbjct: 158 IVQ 160
|
| >3e4g_A ATP synthase subunit S, mitochondrial; leucine-rich repeat, CF0, hydrogen ION transport, inner membrane, ION transport, membrane, mitochondrion; 0.96A {Bos taurus} PDB: 3e3z_A 3dze_A 3e2j_A Length = 176 | Back alignment and structure |
|---|
Score = 56.4 bits (136), Expect = 1e-09
Identities = 9/66 (13%), Positives = 27/66 (40%), Gaps = 3/66 (4%)
Query: 403 QQCQYLEELDITENEVNDEGLKSISRCSKLSSLKLGICSNITDEGLKHVGSTCSM---LK 459
++ +D T++ + G + + ++L C I D L+ + ++ +
Sbjct: 58 LDKYKIQAIDATDSCIMSIGFDHMEGLQYVEKIRLCKCHYIEDGCLERLSQLENLQKSML 117
Query: 460 ELDLYR 465
E+++
Sbjct: 118 EMEIIS 123
|
| >3e4g_A ATP synthase subunit S, mitochondrial; leucine-rich repeat, CF0, hydrogen ION transport, inner membrane, ION transport, membrane, mitochondrion; 0.96A {Bos taurus} PDB: 3e3z_A 3dze_A 3e2j_A Length = 176 | Back alignment and structure |
|---|
Score = 53.7 bits (129), Expect = 1e-08
Identities = 18/93 (19%), Positives = 37/93 (39%), Gaps = 5/93 (5%)
Query: 305 LQSIKFEDCPVARSGIKAIGNWHGSLKELSLSKCSGVTDE---ELSFVVQSHKELRKLDI 361
+Q+I D + G + ++++ L KC + D LS + K + +++I
Sbjct: 63 IQAIDATDSCIMSIGFDHMEG-LQYVEKIRLCKCHYIEDGCLERLSQLENLQKSMLEMEI 121
Query: 362 TCCRKITYASINSITKTCTSLTSLRMECCKLVS 394
C +T I ++ +L L + V
Sbjct: 122 ISCGNVTDKGIIALHH-FRNLKYLFLSDLPGVK 153
|
| >3e4g_A ATP synthase subunit S, mitochondrial; leucine-rich repeat, CF0, hydrogen ION transport, inner membrane, ION transport, membrane, mitochondrion; 0.96A {Bos taurus} PDB: 3e3z_A 3dze_A 3e2j_A Length = 176 | Back alignment and structure |
|---|
Score = 50.2 bits (120), Expect = 2e-07
Identities = 21/128 (16%), Positives = 42/128 (32%), Gaps = 10/128 (7%)
Query: 63 LSRTSARYPFITQLDLSLCPRANDDALSIVSSSSWKLTLRSINLSRSRLFTKVGL---SS 119
L I +D + + + + I L + L S
Sbjct: 53 LPTGPLDKYKIQAIDATDSCIMSIGFDHMEGLQY----VEKIRLCKCHYIEDGCLERLSQ 108
Query: 120 LTVNCRFLTEIDLSNGTEMGDAAAAAIAEAKNLERLWLARCKLITDLGIGRIA--ACCRK 177
L + + E+++ + + D A+ +NL+ L+L+ + + A
Sbjct: 109 LENLQKSMLEMEIISCGNVTDKGIIALHHFRNLKYLFLSDLPGVKEKEKIVQAFKTSLPS 168
Query: 178 LKL-LCLK 184
L+L L LK
Sbjct: 169 LELKLDLK 176
|
| >4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B} Length = 347 | Back alignment and structure |
|---|
Score = 63.7 bits (156), Expect = 3e-11
Identities = 69/390 (17%), Positives = 131/390 (33%), Gaps = 77/390 (19%)
Query: 100 TLRSINLSRSRLFTKVGLSSLTVNCRFLTEIDLSNGTEMGDAAAAAIAEAKNLERLWLAR 159
TL ++ +++F L+ L + +++ E +++ +L +A
Sbjct: 4 TLATLPAPINQIFPDADLAEGIRAV--LQKASVTD--------VVTQEELESITKLVVAG 53
Query: 160 CKLITDL-GIGRIAACCRKLKLLCLKWCIRVTDLGVELVALKCQEIRTLDLSYLPITEKC 218
K + + GI L+ L L ++TD+ L L ++ L + IT+
Sbjct: 54 EK-VASIQGIEY----LTNLEYLNLNGN-QITDIS-PLSNLV--KLTNLYIGTNKITD-- 102
Query: 219 LPPVVKLQYLEDLVLEGCHGIDDDGLASVEYSCKSLKALNLSKCQNISHV-GLSSLIKGA 277
+ + L L +L L + D LA+ + +LNL N+S + LS++
Sbjct: 103 ISALQNLTNLRELYLNEDNISDISPLAN----LTKMYSLNLGANHNLSDLSPLSNMTG-- 156
Query: 278 DYLQQLILAYSFWVSADLSK--CLHNFPMLQSIKFEDCPVARSGIKAIGNWHGSLKELSL 335
L L + S + + N L S+ + I + + SL +
Sbjct: 157 --LNYLTVTES-----KVKDVTPIANLTDLYSLSLNYNQI--EDISPLASLT-SLHYFTA 206
Query: 336 SKCSGVTDEELSFVVQSHKELRKLDITCCRKIT--------------YASINSITK---- 377
++ + L L I + IT N I+
Sbjct: 207 YVNQITDITPVA----NMTRLNSLKIGNNK-ITDLSPLANLSQLTWLEIGTNQISDINAV 261
Query: 378 -TCTSLTSLRMECCKLVSWEAFVLIGQQCQYLEELDITENEVNDEGLKSISRCSKLSSLK 436
T L L + ++ L L + N++ +E ++ I + L++L
Sbjct: 262 KDLTKLKMLNVGSNQISDISVL----NNLSQLNSLFLNNNQLGNEDMEVIGGLTNLTTLF 317
Query: 437 LGICSN-ITD-EGLKHVGSTCSMLKELDLY 464
L N ITD L S + D
Sbjct: 318 LS--QNHITDIRPLAS----LSKMDSADFA 341
|
| >4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B} Length = 347 | Back alignment and structure |
|---|
Score = 63.3 bits (155), Expect = 4e-11
Identities = 56/339 (16%), Positives = 119/339 (35%), Gaps = 63/339 (18%)
Query: 150 KNLERLWLARCKLITDLGIGRIAACCRKLKLLCLKWCIRVTDL-GVELVALKCQEIRTLD 208
R L + + + + L + +V + G+E + L+
Sbjct: 22 AEGIRAVLQKASVTDVVTQEE----LESITKLVVAGE-KVASIQGIE----YLTNLEYLN 72
Query: 209 LSYLPITEKCLPPVVKLQYLEDLVLEGCHGIDD----DGLASVEY--------------- 249
L+ IT+ + P+ L L +L + I D L ++
Sbjct: 73 LNGNQITD--ISPLSNLVKLTNLYIGTNK-ITDISALQNLTNLRELYLNEDNISDISPLA 129
Query: 250 SCKSLKALNLSKCQNISHV-GLSSLIKGADYLQQLILAYSFWVSADLSK--CLHNFPMLQ 306
+ + +LNL N+S + LS++ L L + S + + N L
Sbjct: 130 NLTKMYSLNLGANHNLSDLSPLSNMTG----LNYLTVTES-----KVKDVTPIANLTDLY 180
Query: 307 SIKFEDCPVARSGIKAIGNWHGSLKELSLSKCSGVTDEELSFVVQSHKELRKLDITCCRK 366
S+ + I + + SL + ++ + L L I +
Sbjct: 181 SLSLNYNQI--EDISPLASLT-SLHYFTAYVNQITDITPVA----NMTRLNSLKIGNNK- 232
Query: 367 ITYASINSITKTCTSLTSLRMECCKLVSWEAFVLIGQQCQYLEELDITENEVNDEGLKSI 426
IT ++ + + LT L + ++ A + L+ L++ N+++D + +
Sbjct: 233 IT--DLSPLAN-LSQLTWLEIGTNQISDINAV----KDLTKLKMLNVGSNQISD--ISVL 283
Query: 427 SRCSKLSSLKLGICSNITDEGLKHVGSTCSMLKELDLYR 465
+ S+L+SL L + +E ++ +G + L L L +
Sbjct: 284 NNLSQLNSLFLNNN-QLGNEDMEVIGG-LTNLTTLFLSQ 320
|
| >1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A Length = 466 | Back alignment and structure |
|---|
Score = 62.7 bits (153), Expect = 1e-10
Identities = 73/366 (19%), Positives = 138/366 (37%), Gaps = 54/366 (14%)
Query: 101 LRSINLSRSRLFTKVGLSSLTVNCRFLTEIDLSNGTEMGDAAAAAIAEAKNLERLWLARC 160
L ++ + V + L +T + +G + + NL ++ +
Sbjct: 26 KMKTVLGKTNVTDTVSQTDLD----QVTTLQADR---LGIKSIDGVEYLNNLTQINFSNN 78
Query: 161 KLITDL-GIGRIAACCRKLKLLCLKWCIRVTDLGVELVALKCQEIRTLDLSYLPITEKCL 219
+ +TD+ + KL + + ++ D+ L L + L L IT+ +
Sbjct: 79 Q-LTDITPLKN----LTKLVDILMNNN-QIADI-TPLANLT--NLTGLTLFNNQITD--I 127
Query: 220 PPVVKLQYLEDLVLEGCHGIDDDGLASVEYSCKSLKALNLSKCQNISHVGLSSLIKGADY 279
P+ L L L L D L+ SL+ L+ Q L++L
Sbjct: 128 DPLKNLTNLNRLELSSNTISDISALS----GLTSLQQLSFG-NQVTDLKPLANLTT---- 178
Query: 280 LQQLILAYSFWVSADLSKCLHNFPMLQSIKFEDCPVARSGIKAIGNWHGSLKELSLSKCS 339
L++L + S +D+S L L+S+ + + S I +G +L ELSL+
Sbjct: 179 LERLDI--SSNKVSDISV-LAKLTNLESLIATNNQI--SDITPLGILT-NLDELSLNGNQ 232
Query: 340 GVTDEELSFVVQSHKELRKLDITCCRKITYASINSITKTCTSLTSLRMECCKLVSWEAFV 399
L+ S L LD+ +I+ ++ ++ T LT L++ ++ +
Sbjct: 233 LKDIGTLA----SLTNLTDLDLANN-QIS--NLAPLSG-LTKLTELKLGANQISNISPL- 283
Query: 400 LIGQQCQYLEELDITENEVNDEGLKSISRCSKLSSLKLGICSNITD-EGLKHVGSTCSML 458
L L++ EN++ D + IS L+ L L NI+D + + L
Sbjct: 284 ---AGLTALTNLELNENQLED--ISPISNLKNLTYLTLYFN-NISDISPVSS----LTKL 333
Query: 459 KELDLY 464
+ L Y
Sbjct: 334 QRLFFY 339
|
| >1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A Length = 466 | Back alignment and structure |
|---|
Score = 59.6 bits (145), Expect = 9e-10
Identities = 67/368 (18%), Positives = 141/368 (38%), Gaps = 56/368 (15%)
Query: 100 TLRSINLSRSRLFTKVGLSSLTVNCRFLTEIDLSNGTEMGDAAAAAIAEAKNLERLWLAR 159
L + L +++ L +LT L ++LS+ + D +A ++ +L++L
Sbjct: 113 NLTGLTLFNNQITDIDPLKNLT----NLNRLELSS-NTISDISA--LSGLTSLQQLSF-G 164
Query: 160 CKLITDLGIGRIAACCRKLKLLCLKWCIRVTDLGV--ELVALKCQEIRTLDLSYLPITEK 217
++ + L+ L + +V+D+ V +L L+ +L + I++
Sbjct: 165 NQVTDLKPLAN----LTTLERLDISSN-KVSDISVLAKLTNLE-----SLIATNNQISD- 213
Query: 218 CLPPVVKLQYLEDLVLEGCHGIDDDGLASVEYSCKSLKALNLSKCQNISHVGLSSLIKGA 277
+ P+ L L++L L G D LAS +L L+L+ Q + LS L K
Sbjct: 214 -ITPLGILTNLDELSLNGNQLKDIGTLAS----LTNLTDLDLANNQISNLAPLSGLTK-- 266
Query: 278 DYLQQLILAYSFWVSADLSK--CLHNFPMLQSIKFEDCPVARSGIKAIGNWHGSLKELSL 335
L +L L + +S L L +++ + + I I N +L L+L
Sbjct: 267 --LTELKLGAN-----QISNISPLAGLTALTNLELNENQL--EDISPISNLK-NLTYLTL 316
Query: 336 SKCSGVTDEELSFVVQSHKELRKLDITCCRKITYASINSITKTCTSLTSLRMECCKLVSW 395
+ +S S +L++L K++ ++S+ T++ L ++
Sbjct: 317 YFNNISDISPVS----SLTKLQRLFFYNN-KVS--DVSSLAN-LTNINWLSAGHNQISDL 368
Query: 396 EAFVLIGQQCQYLEELDITENEVNDEGLKSISRCSKLSSLKLGICSNITDEGLKHVGSTC 455
+ +L + + + + + S +++K + I + GS
Sbjct: 369 TPL----ANLTRITQLGLNDQAWTNAPVNYKANVSIPNTVKNVTGALIAPATISDGGS-- 422
Query: 456 SMLKELDL 463
E D+
Sbjct: 423 --YTEPDI 428
|
| >1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A Length = 466 | Back alignment and structure |
|---|
Score = 53.8 bits (130), Expect = 6e-08
Identities = 48/273 (17%), Positives = 86/273 (31%), Gaps = 51/273 (18%)
Query: 200 KCQEIRTLDLSYLPITEKCLPPVVKLQYLEDLVLEGCHGIDDDGLASVEYSCKSLKALNL 259
E L +T+ L + L + DG+ +L +N
Sbjct: 22 ALAEKMKTVLGKTNVTD--TVSQTDLDQVTTLQADRLGIKSIDGVEY----LNNLTQINF 75
Query: 260 SKCQNISHVGLSSLIKGADYLQQLILAYSFWVSADLSKC-------LHNFPMLQSIKFED 312
S Q L +L K L + ++ L N L + +
Sbjct: 76 SNNQLTDITPLKNLTK----LVDI----------LMNNNQIADITPLANLTNLTGLTLFN 121
Query: 313 CPVARSGIKAIGNWHGSLKELSLSKCSGVTDEELSFVVQSHKELRKLDITCCRKITYASI 372
+ + I + N +L L LS + LS + L++L ++T +
Sbjct: 122 NQI--TDIDPLKNLT-NLNRLELSSNTISDISALSGL----TSLQQLSF--GNQVT--DL 170
Query: 373 NSITKTCTSLTSLRMECCKLVSWEAFVLIGQQCQYLEELDITENEVNDEGLKSISRCSKL 432
+ T+L L + K+ + LE L T N+++D + + + L
Sbjct: 171 KPLAN-LTTLERLDISSNKVSDISVL----AKLTNLESLIATNNQISD--ITPLGILTNL 223
Query: 433 SSLKLGICSNITD-EGLKHVGSTCSMLKELDLY 464
L L + D L + L +LDL
Sbjct: 224 DELSLNGN-QLKDIGTLAS----LTNLTDLDLA 251
|
| >3bz5_A Internalin-J, INLJ; leucine rich repeat (LRR), cysteine ladder, asparagine ladder, virulence factor, solenoid, cell WALL; 2.70A {Listeria monocytogenes} Length = 457 | Back alignment and structure |
|---|
Score = 54.7 bits (132), Expect = 3e-08
Identities = 60/369 (16%), Positives = 113/369 (30%), Gaps = 67/369 (18%)
Query: 100 TLRSINLSRSRLFTKVGLSSLT----VNCRF--LTEIDLSNGTEMGDAAAA-------AI 146
TL S++ S + G+ LT + C +T +DLS T + A +
Sbjct: 43 TLTSLDCHNSSITDMTGIEKLTGLTKLICTSNNITTLDLSQNTNLTYLACDSNKLTNLDV 102
Query: 147 AEAKNLERLWLARCKLITDLGIGRIAACCRKLKLLCLKWCIRVTDLGVELVALKCQEIRT 206
L L KL T L + + L L +T++ V ++
Sbjct: 103 TPLTKLTYLNCDTNKL-TKLDVSQ----NPLLTYLNCARN-TLTEIDVS----HNTQLTE 152
Query: 207 LDLSYLPITEKCLPPVVKLQYLEDLVLEGCHGIDDDGLASVEYS-CKSLKALNLSKCQNI 265
LD V L L + ++ S K L LN I
Sbjct: 153 LDCHLNKKIT--KLDVTPQTQLTTLDCSFNK------ITELDVSQNKLLNRLNCDTNN-I 203
Query: 266 SHVGLSSLIKGADYLQQLILAYSFWVSADLSKCLHNFPMLQSI-----KFEDCPVAR-SG 319
+ + L+ I+ L L + + D++ L + V+ S
Sbjct: 204 TKLDLNQNIQ----LTFLDCSSNKLTEIDVT----PLTQLTYFDCSVNPLTELDVSTLSK 255
Query: 320 IKAIGNWHGSLKELSLSKCSGVTDEELSFVVQSHKELRKLDITCCRKIT--YASINSITK 377
+ + L E+ L+ + + + +++++LD+T ++ IT+
Sbjct: 256 LTTLHCIQTDLLEIDLTHNTQLIYFQAE----GCRKIKELDVTHNTQLYLLDCQAAGITE 311
Query: 378 ----TCTSLTSLRMECCKLVSWEAFVLIGQQCQYLEELDITENEVNDEGLKSISRCSKLS 433
L L + +L L L+ L ++ S K+
Sbjct: 312 LDLSQNPKLVYLYLNNTELTE-----LDVSHNTKLKSLSCVNAH-----IQDFSSVGKIP 361
Query: 434 SLKLGICSN 442
+L +
Sbjct: 362 ALNNNFEAE 370
|
| >1m9s_A Internalin B; cell invasion, GW domains, SH3 domains, signaling protein; 2.65A {Listeria monocytogenes} SCOP: b.1.18.15 b.34.11.1 b.34.11.1 b.34.11.1 c.10.2.1 PDB: 2y5q_A Length = 605 | Back alignment and structure |
|---|
Score = 54.3 bits (130), Expect = 5e-08
Identities = 36/242 (14%), Positives = 77/242 (31%), Gaps = 36/242 (14%)
Query: 200 KCQEIRTLDLSYLPITEKCLPPVVKLQYLEDLVLEGCHGIDDDGLASVEYSCKSLKALNL 259
E +L +T+ +L ++ ++ G+ ++ L L
Sbjct: 19 AFAETIKDNLKKKSVTD--AVTQNELNSIDQIIANNSDIKSVQGIQY----LPNVTKLFL 72
Query: 260 SKCQNISHVGLSSLIKGADYLQQLILAYSFWVSADLSK--CLHNFPMLQSIKFEDCPVAR 317
+ + L++L L L L + + L + L+S+ E +
Sbjct: 73 NGNKLTDIKPLTNLKN----LGWLFLDEN-----KIKDLSSLKDLKKLKSLSLEHNGI-- 121
Query: 318 SGIKAIGNWHGSLKELSLSKCSGVTDEELSFVVQSHKELRKLDITCCRKITYASINSIT- 376
S I + + L+ L L LS +L L + + I+ I
Sbjct: 122 SDINGLVHLP-QLESLYLGNNKITDITVLS----RLTKLDTLSLEDNQ------ISDIVP 170
Query: 377 -KTCTSLTSLRMECCKLVSWEAFVLIGQQCQYLEELDITENEVNDEGLKSISRCSKLSSL 435
T L +L + + A + L+ L++ E ++ + S +++
Sbjct: 171 LAGLTKLQNLYLSKNHISDLRAL----AGLKNLDVLELFSQECLNKPINHQSNLVVPNTV 226
Query: 436 KL 437
K
Sbjct: 227 KN 228
|
| >1m9s_A Internalin B; cell invasion, GW domains, SH3 domains, signaling protein; 2.65A {Listeria monocytogenes} SCOP: b.1.18.15 b.34.11.1 b.34.11.1 b.34.11.1 c.10.2.1 PDB: 2y5q_A Length = 605 | Back alignment and structure |
|---|
Score = 47.4 bits (112), Expect = 7e-06
Identities = 50/218 (22%), Positives = 89/218 (40%), Gaps = 36/218 (16%)
Query: 100 TLRSINLSRSRLFTKVGLSSLTVNCRFLTEIDLSNG--TEMGDAAAAAIAEAKNLERLWL 157
++ I + S + + G+ L +T++ L+ T++ + KNL L+L
Sbjct: 44 SIDQIIANNSDIKSVQGIQYLP----NVTKLFLNGNKLTDI-----KPLTNLKNLGWLFL 94
Query: 158 ARCKLITDL-GIGRIAACCRKLKLLCLKWCIRVTDL-GVELVALKCQEIRTLDLSYLPIT 215
K I DL + +KLK L L+ ++D+ G+ ++ +L L IT
Sbjct: 95 DENK-IKDLSSL----KDLKKLKSLSLEHN-GISDINGLV----HLPQLESLYLGNNKIT 144
Query: 216 EKCLPPVVKLQYLEDLVLEGCHGIDDDGLASVEYSCKSLKALNLSKCQNISHV-GLSSLI 274
+ + + +L L+ L LE D LA L+ L LSK IS + L+ L
Sbjct: 145 D--ITVLSRLTKLDTLSLEDNQISDIVPLA----GLTKLQNLYLSKNH-ISDLRALAGLK 197
Query: 275 KGADYLQQLILAYSFWVSADLSKCLHNFPMLQSIKFED 312
L L L ++ ++ N + ++K D
Sbjct: 198 N----LDVLELFSQECLNKPINH-QSNLVVPNTVKNTD 230
|
| >3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A* Length = 606 | Back alignment and structure |
|---|
Score = 53.5 bits (129), Expect = 9e-08
Identities = 65/400 (16%), Positives = 138/400 (34%), Gaps = 25/400 (6%)
Query: 68 ARYPFITQLDLSLCPRANDDALSIVSSSS-WKLT-LRSINLSRSRLFTKVGLSSLTVNCR 125
+R +T LDL+ C + + + L ++ L+ + L + ++L+ +
Sbjct: 54 SRLINLTFLDLTRC------QIYWIHEDTFQSQHRLDTLVLTANPL-IFMAETALS-GPK 105
Query: 126 FLTEIDLSNGTEMGDAAAAAIAEAKNLERLWLARCKLITDLGIGRIAACCRKLKLLCLKW 185
L + T + + K LE L+L I+ + + + KLK+L +
Sbjct: 106 ALKHLFFIQ-TGISSIDFIPLHNQKTLESLYLGSNH-ISSIKLPKGFPT-EKLKVLDFQN 162
Query: 186 CIRVTDLGVE-LVALKCQEIRTLDLSYLPITEKCLPPVV-KLQYLEDLVLEGCHGIDDDG 243
+ L E + +L+ +L+L+ I + P + L G +
Sbjct: 163 N-AIHYLSKEDMSSLQQATNLSLNLNGNDIA--GIEPGAFDSAVFQSLNFGGTQNLLVIF 219
Query: 244 LASVEYSCKSLKALNLSKCQNISHVGLSSLIKGADYLQQLILAYSFWVSADLSKCLHNFP 303
+ +SL + ++ + L + S H F
Sbjct: 220 KGLKNSTIQSLWLGTFEDMDDEDISPAVFEGLCEMSVESINLQKHY-FFNISSNTFHCFS 278
Query: 304 MLQSIKFEDCPVARSGIKAIGNWHGSLKELSLSKCSGVTDEELSFVVQSHKELRKLDITC 363
LQ + + S + + +LK+L LS ++S + L L I
Sbjct: 279 GLQELDLTATHL--SELPSGLVGLSTLKKLVLSANKFENLCQISA--SNFPSLTHLSIKG 334
Query: 364 CRKITYASINSITKTCTSLTSLRMECCKLVSWEAFVLIGQQCQYLEELDITENEVNDEGL 423
K + + +L L + + + + L + +L+ L+++ NE
Sbjct: 335 NTKRLELGTGCL-ENLENLRELDLSHDDIETSDCCNLQLRNLSHLQSLNLSYNEPLSLKT 393
Query: 424 KSISRCSKLSSLKLGICSNITDEGLKHVGSTCSMLKELDL 463
++ C +L L L + + + + +LK L+L
Sbjct: 394 EAFKECPQLELLDLA-FTRLKVKDAQSPFQNLHLLKVLNL 432
|
| >3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A* Length = 606 | Back alignment and structure |
|---|
Score = 44.6 bits (106), Expect = 6e-05
Identities = 54/371 (14%), Positives = 121/371 (32%), Gaps = 26/371 (7%)
Query: 101 LRSINLSRSRLFTKVGLSSLTVNCRFLTEIDLSNGTEMGDAAAAAIAEAKNLER--LWLA 158
L S+ L + + + + L L +D N + + ++ + L L
Sbjct: 131 LESLYLGSNHI-SSIKLPKGF-PTEKLKVLDFQN-NAIHYLSKEDMSSLQQATNLSLNLN 187
Query: 159 RCKLITDLGIGRIAACCRKLKLLCLKWCIRVTDLGVELVALKCQEIRTLDLSYLPITE-- 216
+ I A + L + + L Q + + +
Sbjct: 188 GNDIAG---IEPGAFDSAVFQSLNFGGTQNLLVIFKGLKNSTIQSLWLGTFEDMDDEDIS 244
Query: 217 KCLPPVVKLQYLEDLVLEGCH--GIDDDGLASVEYSCKSLKALNLSKCQNISHVGLSSLI 274
+ + +E + L+ + I + L+ L+L+ ++S L S +
Sbjct: 245 PAVFEGLCEMSVESINLQKHYFFNISSNTFHC----FSGLQELDLTAT-HLSE--LPSGL 297
Query: 275 KGADYLQQLILAYSFWVSADLSKCLHNFPMLQSIKFEDCPVARSGIKAIGNWHGSLKELS 334
G L++L+L+ + NFP L + + +L+EL
Sbjct: 298 VGLSTLKKLVLSANK-FENLCQISASNFPSLTHLSIKGNTKRLELGTGCLENLENLRELD 356
Query: 335 LSKCSGVTDEELSFVVQSHKELRKLDITCCRKITYASINSITKTCTSLTSLRMECCKLVS 394
LS T + + +++ L+ L+++ + + K C L L + +L
Sbjct: 357 LSHDDIETSDCCNLQLRNLSHLQSLNLSYN-EPLSLKTEAF-KECPQLELLDLAFTRLKV 414
Query: 395 WEAFVLIGQQCQYLEELDITENEVNDEGLKSISRCSKLSSLKLGICSNITDEGLKHVG-- 452
+A L+ L+++ + ++ + L L L ++ ++
Sbjct: 415 KDAQSPFQN-LHLLKVLNLSHSLLDISSEQLFDGLPALQHLNLQ-GNHFPKGNIQKTNSL 472
Query: 453 STCSMLKELDL 463
T L+ L L
Sbjct: 473 QTLGRLEILVL 483
|
| >3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A* Length = 606 | Back alignment and structure |
|---|
Score = 43.5 bits (103), Expect = 1e-04
Identities = 41/243 (16%), Positives = 88/243 (36%), Gaps = 18/243 (7%)
Query: 201 CQEIRTLDLSYLPITEKCLPP-VVKLQYLEDLVLEGCH--GIDDDGLASVEYSCKSLKAL 257
++ LDL+ ++E LP +V L L+ LVL + ++ SL L
Sbjct: 277 FSGLQELDLTATHLSE--LPSGLVGLSTLKKLVLSANKFENLCQISASN----FPSLTHL 330
Query: 258 NLSKCQNISHVGLSSLIKGADYLQQLILAY-SFWVSADLSKCLHNFPMLQSIKFEDCPVA 316
++ +G L + + L++L L++ S + L N LQS+
Sbjct: 331 SIKGNTKRLELGTGCL-ENLENLRELDLSHDDIETSDCCNLQLRNLSHLQSLNLSYNEPL 389
Query: 317 RSGIKAIGNWHGSLKELSLSKCSGVTDEELSFVVQSHKELRKLDITCCRKITYASINSIT 376
+A L+ L L+ + ++ Q+ L+ L+++ + S +
Sbjct: 390 SLKTEAFKECP-QLELLDLAFTR-LKVKDAQSPFQNLHLLKVLNLSHSL-LDI-SSEQLF 445
Query: 377 KTCTSLTSLRMECCKLVSWEAFVLIG--QQCQYLEELDITENEVNDEGLKSISRCSKLSS 434
+L L ++ Q LE L ++ +++ + + ++
Sbjct: 446 DGLPALQHLNLQGNHF-PKGNIQKTNSLQTLGRLEILVLSFCDLSSIDQHAFTSLKMMNH 504
Query: 435 LKL 437
+ L
Sbjct: 505 VDL 507
|
| >3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A* Length = 606 | Back alignment and structure |
|---|
Score = 41.9 bits (99), Expect = 3e-04
Identities = 48/291 (16%), Positives = 87/291 (29%), Gaps = 44/291 (15%)
Query: 204 IRTLDLSYLPITEKCLPPVV--KLQYLEDLVLEGCH--GIDDDGLASVEYSCKSLKALNL 259
L+ S+ + + +L L L L C I +D S L L L
Sbjct: 35 TECLEFSFNVLPT--IQNTTFSRLINLTFLDLTRCQIYWIHEDTF----QSQHRLDTLVL 88
Query: 260 SKCQ--NISHVGLSSLIKGADYLQQLILAYSFWVSADLSKCLHNFPMLQSIKFEDCPVAR 317
+ ++ LS L+ L + S D LHN L+S+ ++
Sbjct: 89 TANPLIFMAETALSGPKA----LKHLFFIQTGISSID-FIPLHNQKTLESLYLGSNHISS 143
Query: 318 SGIKAIGNWHGSLKELSLSKC--SGVTDEELSFVVQSHK--------------------- 354
+ LK L ++ E++S + Q+
Sbjct: 144 IKLPKGFPT-EKLKVLDFQNNAIHYLSKEDMSSLQQATNLSLNLNGNDIAGIEPGAFDSA 202
Query: 355 ELRKLDITCCRKITYASINSITKTCTSLTSLRMECCKLVSWEAFVLIGQQCQYLEELDIT 414
+ L+ + + T SL E V G +E +++
Sbjct: 203 VFQSLNFGGTQNLLVIFKGLKNSTIQSLWLGTFEDMDDEDISPAVFEGLCEMSVESINLQ 262
Query: 415 ENEVNDEGLKSISRCSKLSSLKLGICSNITDEGLKHVGSTCSMLKELDLYR 465
++ + + S L L L ++++ L S LK+L L
Sbjct: 263 KHYFFNISSNTFHCFSGLQELDLTAT-HLSE--LPSGLVGLSTLKKLVLSA 310
|
| >1h6t_A Internalin B; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.6A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 2wqu_A 2uzy_A 2uzx_A 2wqv_A* 2wqw_A 2wqx_A 1d0b_A 1otn_A 1oto_A 1otm_A Length = 291 | Back alignment and structure |
|---|
Score = 52.0 bits (125), Expect = 2e-07
Identities = 40/256 (15%), Positives = 84/256 (32%), Gaps = 32/256 (12%)
Query: 200 KCQEIRTLDLSYLPITEKCLPPVVKLQYLEDLVLEGCHGIDDDGLASVEYSCKSLKALNL 259
E +L +T+ +L ++ ++ G+ ++ L L
Sbjct: 22 AFAETIKDNLKKKSVTD--AVTQNELNSIDQIIANNSDIKSVQGIQY----LPNVTKLFL 75
Query: 260 SKCQNISHVGLSSLIKGADYLQQLILAYSFWVSADLSK--CLHNFPMLQSIKFEDCPVAR 317
+ + L++L L L L + + L + L+S+ E +
Sbjct: 76 NGNKLTDIKPLANLKN----LGWLFLDEN-----KVKDLSSLKDLKKLKSLSLEHNGI-- 124
Query: 318 SGIKAIGNWHGSLKELSLSKCSGVTDEELSFVVQSHKELRKLDITCCRKITYASINSITK 377
S I + + L+ L L LS +L L + +I+ I +
Sbjct: 125 SDINGLVH-LPQLESLYLGNNKITDITVLS----RLTKLDTLSLEDN-QIS--DIVPLAG 176
Query: 378 TCTSLTSLRMECCKLVSWEAFVLIGQQCQYLEELDITENEVNDEGLKSISRCSKLSSLKL 437
T L +L + + A + L+ L++ E ++ + S +++K
Sbjct: 177 -LTKLQNLYLSKNHISDLRAL----AGLKNLDVLELFSQECLNKPINHQSNLVVPNTVKN 231
Query: 438 GICSNITDEGLKHVGS 453
S +T E + G
Sbjct: 232 TDGSLVTPEIISDDGD 247
|
| >2ra8_A Uncharacterized protein Q64V53_bacfr; WGR domain, LRR domain, leucine rich repeats, BFR43, structural genomics, PSI-2; 1.95A {Bacteroides fragilis} Length = 362 | Back alignment and structure |
|---|
Score = 51.5 bits (122), Expect = 2e-07
Identities = 26/194 (13%), Positives = 60/194 (30%), Gaps = 19/194 (9%)
Query: 288 SFWVSADLSKCLHNFPMLQSIKFEDCPVARSGIKAIGNWHGSLKEL-----SLSKCSGVT 342
++ + + F + + + D I I L + L+
Sbjct: 124 CSDIADGIVENKEKFAHFEGLFWGDIDFEEQEISWI--EQVDLSPVLDAMPLLNNLKIKG 181
Query: 343 DEELSFVVQSHKELRKLDITCCRKITYASINSITKTCTSLTSLRME-------CCKLVSW 395
LS + L+ L+I + + +L L + ++
Sbjct: 182 TNNLSIGKKPRPNLKSLEIISGGLPDSVVEDILGSDLPNLEKLVLYVGVEDYGFDGDMNV 241
Query: 396 EAFVLIGQQCQYLEELDITENEVNDEGLKSISRCSKLSSLK-LGICSN-ITDEGLKHVGS 453
+ + L+ L I + E + ++ L L+ + I + +TDEG + +
Sbjct: 242 FRPLFSKDRFPNLKWLGIVDAEEQNVVVEMFLESDILPQLETMDISAGVLTDEGARLLLD 301
Query: 454 TC---SMLKELDLY 464
LK +++
Sbjct: 302 HVDKIKHLKFINMK 315
|
| >2ra8_A Uncharacterized protein Q64V53_bacfr; WGR domain, LRR domain, leucine rich repeats, BFR43, structural genomics, PSI-2; 1.95A {Bacteroides fragilis} Length = 362 | Back alignment and structure |
|---|
Score = 46.5 bits (109), Expect = 1e-05
Identities = 32/229 (13%), Positives = 72/229 (31%), Gaps = 16/229 (6%)
Query: 214 ITEKCLPPVVKLQYLEDLVLEGCHGIDDDGLASVEYSCKSLKALNLSKCQ----NISHVG 269
+ +K LP + ++ DG+ + + L IS +
Sbjct: 101 LKDKKLPSLKQITIGXWGYEGEDCSDIADGIVENKEKFAHFEGLFWGDIDFEEQEISWIE 160
Query: 270 LSSLIKGADYLQQLILAYSFWVSADLSKCLHNFPMLQSIKFEDCPVARSGIKAIGNWHG- 328
L D + L + +LS P L+S++ + S ++ I
Sbjct: 161 QVDLSPVLDAMPLLNNLKIKG-TNNLSIGKKPRPNLKSLEIISGGLPDSVVEDILGSDLP 219
Query: 329 SLKELSLSKCS-------GVTDEELSFVVQSHKELRKLDITCCRKITY-ASINSITKTCT 380
+L++L L + F L+ L I + + +
Sbjct: 220 NLEKLVLYVGVEDYGFDGDMNVFRPLFSKDRFPNLKWLGIVDAEEQNVVVEMFLESDILP 279
Query: 381 SLTSLRMECCKL--VSWEAFVLIGQQCQYLEELDITENEVNDEGLKSIS 427
L ++ + L + + ++L+ +++ N ++DE K +
Sbjct: 280 QLETMDISAGVLTDEGARLLLDHVDKIKHLKFINMKYNYLSDEMKKELQ 328
|
| >2ra8_A Uncharacterized protein Q64V53_bacfr; WGR domain, LRR domain, leucine rich repeats, BFR43, structural genomics, PSI-2; 1.95A {Bacteroides fragilis} Length = 362 | Back alignment and structure |
|---|
Score = 43.4 bits (101), Expect = 1e-04
Identities = 15/120 (12%), Positives = 40/120 (33%), Gaps = 14/120 (11%)
Query: 67 SARYPFITQLDLSLC-----PRANDDALSIVSSSSWKLTLRSINLSRSRLFTKV--GLSS 119
+ P + +L L + + + + S L+ + + + V
Sbjct: 215 GSDLPNLEKLVLYVGVEDYGFDGDMNVFRPLFSKDRFPNLKWLGIVDAEEQNVVVEMFLE 274
Query: 120 LTVNCRFLTEIDLSNGTEMGDAAAAAIAEA----KNLERLWLARCKLITDLGIGRIAACC 175
+ + L +D+S G + D A + + K+L+ + + ++D +
Sbjct: 275 SDILPQ-LETMDISAGV-LTDEGARLLLDHVDKIKHLKFINMKYNY-LSDEMKKELQKSL 331
|
| >1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A* Length = 680 | Back alignment and structure |
|---|
Score = 50.4 bits (121), Expect = 1e-06
Identities = 69/392 (17%), Positives = 133/392 (33%), Gaps = 53/392 (13%)
Query: 100 TLRSINLSRSRLFTKVGLSSLTVNCRFLTEIDLSN----GTEMGDAAAAAIAEAKNLERL 155
+ +NL+ ++L ++ ++ T LT +D+ E + L+ L
Sbjct: 26 NITVLNLTHNQL-RRLPAANFT-RYSQLTSLDVGFNTISKLE-----PELCQKLPMLKVL 78
Query: 156 WLARCKLITDLGIGRIAACCRKLKLLCLKWCIRVTDLGVELVALKCQEIRTLDLSYLPIT 215
L +L + L + A C L L L + + K + + TLDLS+ ++
Sbjct: 79 NLQHNEL-SQL-SDKTFAFCTNLTELHLMSN-SIQKIKNNPFV-KQKNLITLDLSHNGLS 134
Query: 216 EKCLPPVVKLQYLEDLVLEGCH--GIDDDGLASVEYSCKSLKALNLSKCQNISHVGLSSL 273
L V+L+ L++L+L + + L + SLK L LS Q +
Sbjct: 135 STKLGTQVQLENLQELLLSNNKIQALKSEELDIF--ANSSLKKLELSSNQ------IKEF 186
Query: 274 IKGA----DYLQQLILAYSFWVSADLSKCLHNFPM--LQSIKFEDCPVARSGIKAIGNWH 327
G L L L + K ++++ + ++ +
Sbjct: 187 SPGCFHAIGRLFGLFLNNVQLGPSLTEKLCLELANTSIRNLSLSNSQLSTTSNTTFLGLK 246
Query: 328 G-SLKELSLSKC--SGVTDEELSFVVQSHKELRKLDITCCRKITYASINSITKTCTSLTS 384
+L L LS + V ++ + +L + I + +S+ ++
Sbjct: 247 WTNLTMLDLSYNNLNVVGNDSFA----WLPQLEYFFLEYN-NIQHLFSHSLHG-LFNVRY 300
Query: 385 LRM---------ECCKLVSWEAFVLIGQQCQYLEELDITENEVNDEGLKSISRCSKLSSL 435
L + L + F Q + LE L++ +N++ + L L
Sbjct: 301 LNLKRSFTKQSISLASLPKIDDFSF--QWLKCLEHLNMEDNDIPGIKSNMFTGLINLKYL 358
Query: 436 KLG--ICSNITDEGLKHVGSTCSMLKELDLYR 465
L S T V S L L+L +
Sbjct: 359 SLSNSFTSLRTLTNETFVSLAHSPLHILNLTK 390
|
| >1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A* Length = 680 | Back alignment and structure |
|---|
Score = 49.2 bits (118), Expect = 2e-06
Identities = 58/379 (15%), Positives = 117/379 (30%), Gaps = 49/379 (12%)
Query: 101 LRSINLSRSRLFTKVGLSSLTVNCRFLTEIDLSNGTEMGDAAAAAIAEAKNLERLWLARC 160
L ++LS + L VG S L L + + ++ N+ L L R
Sbjct: 250 LTMLDLSYNNL-NVVGNDSFA-WLPQLEYFFLEY-NNIQHLFSHSLHGLFNVRYLNLKRS 306
Query: 161 KLITDLGIGRIAACCRKLKLLCLKWCIRVTDLGVELVALKCQEIRTLDLSYLPITEKCLP 220
+ + + K+ +W + + L++ I +
Sbjct: 307 FTKQSISLASL----PKIDDFSFQWL---------------KCLEHLNMEDNDIPG--IK 345
Query: 221 PVV--KLQYLEDLVLEGCH--GIDDDGLASVEYSCKSLKALNLSKCQNISHVGLSSLIKG 276
+ L L+ L L V + L LNL+K + +S +
Sbjct: 346 SNMFTGLINLKYLSLSNSFTSLRTLTNETFVSLAHSPLHILNLTKNK------ISKIESD 399
Query: 277 A----DYLQQLILAYSFWVSADLSKCLHNFPMLQSIKFEDCPVARSGIKAIGNWHGSLKE 332
A +L+ L L + + + I + + SL+
Sbjct: 400 AFSWLGHLEVLDLGLNEIGQELTGQEWRGLENIFEIYLSYNKYLQLTRNSFALVP-SLQR 458
Query: 333 LSLSKCSGVTDEELSFVVQSHKELRKLDITCCRKITYASINSITKTCTSLTSLRMECCKL 392
L L + + + Q + L LD++ I + + + L L ++ L
Sbjct: 459 LMLRRVALKNVDSSPSPFQPLRNLTILDLSNNN-IANINDDMLEG-LEKLEILDLQHNNL 516
Query: 393 VSWEAFVLIG------QQCQYLEELDITENEVNDEGLKSISRCSKLSSLKLGICSNITDE 446
G + +L L++ N ++ ++ +L + LG +N+
Sbjct: 517 ARLWKHANPGGPIYFLKGLSHLHILNLESNGFDEIPVEVFKDLFELKIIDLG-LNNLNTL 575
Query: 447 GLKHVGSTCSMLKELDLYR 465
V + LK L+L +
Sbjct: 576 -PASVFNNQVSLKSLNLQK 593
|
| >1io0_A Tropomodulin; LRR protein, right-handed super-helix, protein binding; 1.45A {Gallus gallus} SCOP: c.10.1.1 Length = 185 | Back alignment and structure |
|---|
Score = 47.3 bits (113), Expect = 2e-06
Identities = 21/160 (13%), Positives = 49/160 (30%), Gaps = 38/160 (23%)
Query: 117 LSSLTVNCRFLTEIDLSNGTEMGDAAAAAIAEA----KNLERLWLARCKLITDLGIGRIA 172
L + N L E++L+N + A AEA +++ + + D +A
Sbjct: 28 LKRIQNNDPDLEEVNLNNIMNIPVPTLKACAEALKTNTYVKKFSIVGTR-SNDPVAFALA 86
Query: 173 ACCRK---LKLLCLKWCIRVTDLGVELVA--LKCQE-IRTLDLSYLPITEKCLPPVVKLQ 226
+ LK L ++ ++ G+ + L+ + L +
Sbjct: 87 EMLKVNNTLKSLNVESN-FISGSGILALVEALQSNTSLIELRID---------------- 129
Query: 227 YLEDLVLEGCHGIDDDG---LASVEYSCKSLKALNLSKCQ 263
+ ++ +A++ +L Q
Sbjct: 130 -------NQSQPLGNNVEMEIANMLEKNTTLLKFGYHFTQ 162
|
| >4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes} Length = 197 | Back alignment and structure |
|---|
Score = 47.3 bits (113), Expect = 2e-06
Identities = 36/164 (21%), Positives = 58/164 (35%), Gaps = 26/164 (15%)
Query: 127 LTEIDLSNGTEMGDAAAAAIAEAKNLERLWLARCKLITDL-GIGRIAACCRKLKLLCLKW 185
LT I L+N + D I A N++ L + T+ I + L+ L +
Sbjct: 46 LTYITLAN-INVTDLTG--IEYAHNIKDLTINNIH-ATNYNPI----SGLSNLERLRIMG 97
Query: 186 CIRVTDLGVE-LVALKCQEIRTLDLSYLPITEKCLPPVVKLQYLEDLVLEGCHGIDD-DG 243
VT + L L + LD+S+ + L + L + + L I D
Sbjct: 98 K-DVTSDKIPNLSGLT--SLTLLDISHSAHDDSILTKINTLPKVNSIDLSYNGAITDIMP 154
Query: 244 LASVEYSCKSLKALNLSKCQ--NISHVGLSSLIKGADYLQQLIL 285
L + LK+LN+ + G+ K L QL
Sbjct: 155 LK----TLPELKSLNIQFDGVHDYR--GIEDFPK----LNQLYA 188
|
| >4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes} Length = 197 | Back alignment and structure |
|---|
Score = 44.2 bits (105), Expect = 2e-05
Identities = 35/137 (25%), Positives = 58/137 (42%), Gaps = 15/137 (10%)
Query: 329 SLKELSLSKCSGVTDEELSFVVQSHKELRKLDITCCRKITYASINSITKTCTSLTSLRME 388
SL ++L+ VTD L+ + + ++ L I T + N I ++L LR+
Sbjct: 45 SLTYITLANI-NVTD--LTGI-EYAHNIKDLTINNI-HAT--NYNPI-SGLSNLERLRIM 96
Query: 389 CCKLVSWEAFVLIGQQCQYLEELDITENEVNDEGLKSISRCSKLSSLKLGICSNITD-EG 447
+ S + L L LDI+ + +D L I+ K++S+ L ITD
Sbjct: 97 GKDVTSDKIPNL--SGLTSLTLLDISHSAHDDSILTKINTLPKVNSIDLSYNGAITDIMP 154
Query: 448 LKHVGSTCSMLKELDLY 464
LK LK L++
Sbjct: 155 LKT----LPELKSLNIQ 167
|
| >4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes} Length = 197 | Back alignment and structure |
|---|
Score = 43.0 bits (102), Expect = 5e-05
Identities = 23/171 (13%), Positives = 58/171 (33%), Gaps = 19/171 (11%)
Query: 252 KSLKALNLSKCQNISHV-GLSSLIKGADYLQQLILAYSFWVSADLSKCLHNFPMLQSIKF 310
SL + L+ ++ + G+ ++ L + + + + + L+ ++
Sbjct: 44 NSLTYITLANIN-VTDLTGIEYAHN----IKDLTINNI-HAT-NYN-PISGLSNLERLRI 95
Query: 311 EDCPVARSGIKAIGNWHGSLKELSLSKCSGVTDEELSFVVQSHKELRKLDITCCRKITYA 370
V I + SL L +S D L+ + + ++ +D++ IT
Sbjct: 96 MGKDVTSDKIPNLSGLT-SLTLLDISHS-AHDDSILTKI-NTLPKVNSIDLSYNGAIT-- 150
Query: 371 SINSITKTCTSLTSLRMECCKLVSWEAFVLIGQQCQYLEELDITENEVNDE 421
I + L SL ++ + + + L +L + +
Sbjct: 151 DIMPLKT-LPELKSLNIQFDGVHDYRGI----EDFPKLNQLYAFSQTIGGK 196
|
| >3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A* Length = 606 | Back alignment and structure |
|---|
Score = 48.9 bits (117), Expect = 2e-06
Identities = 64/448 (14%), Positives = 127/448 (28%), Gaps = 72/448 (16%)
Query: 68 ARYPFITQLDLSLCPRANDDALSIVSSSS-WKLT-LRSINLSRSRLFTKVGLSSLTVNCR 125
+ + + LDLS C + + + L L ++ L+ + + S +
Sbjct: 53 SNFSELQWLDLSRC------EIETIEDKAWHGLHHLSNLILTGNPI-QSFSPGSFS-GLT 104
Query: 126 FLTEIDLSNGTEMGDAAAAAIAEAKNLERLWLARCKLITDLGIGRIAACCRKLKLL---- 181
L + T++ + I + L++L +A I + + L +
Sbjct: 105 SLENLVAVE-TKLASLESFPIGQLITLKKLNVAHNF-IHSCKLPAYFSNLTNLVHVDLSY 162
Query: 182 ---------------CLKWCIRVTDLG------VELVALKCQEIRTLDLSYLPITEKCLP 220
D+ ++ A + ++ L L + +
Sbjct: 163 NYIQTITVNDLQFLRENPQVNLSLDMSLNPIDFIQDQAFQGIKLHELTLRGNFNSSNIMK 222
Query: 221 PVVK-LQYLEDLVLEGCHGIDDDGLASVEYSC----KSLKALNLSKCQNISHVGLSSLIK 275
++ L L L D+ L E S +
Sbjct: 223 TCLQNLAGLHVHRLILGEFKDERNLEIFEPSIMEGLCDVTIDEFRLTYTNDFSDDIVKFH 282
Query: 276 GADYLQQLILAY------------SFWVSADLSKCL------HNFPMLQSIKFEDCPVAR 317
+ + LA W S + +C + P L+S+
Sbjct: 283 CLANVSAMSLAGVSIKYLEDVPKHFKWQSLSIIRCQLKQFPTLDLPFLKSLTLTMNK--- 339
Query: 318 SGIKAIGNWHG--SLKELSLSKCSGVTDEELSFVVQSHKELRKLDITCCRKITYASINSI 375
SL L LS+ + S+ LR LD++ +++
Sbjct: 340 --GSISFKKVALPSLSYLDLSRNALSFSGCCSYSDLGTNSLRHLDLSFN-GAI--IMSAN 394
Query: 376 TKTCTSLTSLRMECCKLVSWEAFVLIGQQCQYLEELDITENEVNDEGLKSISRCSKLSSL 435
L L + L F + L LDI+ + + L++L
Sbjct: 395 FMGLEELQHLDFQHSTLKRVTEFSAF-LSLEKLLYLDISYTNTKIDFDGIFLGLTSLNTL 453
Query: 436 KLGICSNITDEGLKHVGSTCSMLKELDL 463
K+ ++ D L +V + + L LDL
Sbjct: 454 KMA-GNSFKDNTLSNVFANTTNLTFLDL 480
|
| >3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A* Length = 606 | Back alignment and structure |
|---|
Score = 47.3 bits (113), Expect = 8e-06
Identities = 66/383 (17%), Positives = 109/383 (28%), Gaps = 36/383 (9%)
Query: 73 ITQLDLSLCPRANDDALSIVSSSSWKLT-LRSINLSRSRLF-----TKVGLSSLTVNCRF 126
+ +L L N ++ +I+ + L L L S + C
Sbjct: 206 LHELTLR----GNFNSSNIMKTCLQNLAGLHVHRLILGEFKDERNLEIFEPSIMEGLCDV 261
Query: 127 LTEIDLSNGTEMGDAAAAAIAEAKNLERLWLARCKLITDLGIGRIAACCRKLKLLCLKWC 186
+ T N+ + LA I L K + L + C
Sbjct: 262 TIDEFRLTYTNDFSDDIVKFHCLANVSAMSLAGVS-IKYLEDV---PKHFKWQSLSIIRC 317
Query: 187 IRVTDLGVELVALKCQEIRTLDLSYLPITEKCLPPVVKLQYLEDLVLEGCHGIDDDGLAS 246
+ L +++L L+ + V L L L L +
Sbjct: 318 -----QLKQFPTLDLPFLKSLTLTMNKGSI--SFKKVALPSLSYLDLSRNALSFSGCCSY 370
Query: 247 VEYSCKSLKALNLSKCQNISHVGLSSLIKGADYLQQLILAYSFWVSADLSKCLHNFPMLQ 306
+ SL+ L+LS I +S+ G + LQ L +S + L
Sbjct: 371 SDLGTNSLRHLDLSFNGAII---MSANFMGLEELQHLDFQHSTLKRVTEFSAFLSLEKLL 427
Query: 307 SIKFEDCPVARSGIKAIGNWHGSLKELSLSKCSGVTDEELSFVVQSHKELRKLDITCCRK 366
+ SL L ++ S D LS V + L LD++ C +
Sbjct: 428 YLDISYTNTKIDFDGIFLG-LTSLNTLKMAGNS-FKDNTLSNVFANTTNLTFLDLSKC-Q 484
Query: 367 ITYASINSITKTCTSLTSLRMECCKLVSWEAFVLIGQQCQYLEELDITENEVNDEGLKSI 426
+ S T L L M L+ ++ Q L LD + N +
Sbjct: 485 LEQISWGVF-DTLHRLQLLNMSHNNLLFLDSSHY--NQLYSLSTLDCSFNRIETSKGILQ 541
Query: 427 SRCSKLSSLKLG------ICSNI 443
L+ L IC +
Sbjct: 542 HFPKSLAFFNLTNNSVACICEHQ 564
|
| >1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A Length = 454 | Back alignment and structure |
|---|
Score = 46.9 bits (112), Expect = 1e-05
Identities = 56/384 (14%), Positives = 117/384 (30%), Gaps = 93/384 (24%)
Query: 99 LTLRSINLSRSRLFTKVGLSSLTVNCRFLTEIDLSNGTEMGDAAAAAIAEAKNLERLWLA 158
R + +SR R L +N L+ + +LE L +
Sbjct: 55 GEQREMAVSRLRDCLDRQAHELELNNLGLSSLP---------------ELPPHLESLVAS 99
Query: 159 RCKLITDL--GIGRIAACCRKLKLLCLKWCIRVTDLGVELVALKCQEIRTLDLSYLPITE 216
L T+L + L + ++DL L L +S + +
Sbjct: 100 CNSL-TELPELPQS----LKSLLVDNNNLK-ALSDLPPLL--------EYLGVSNNQLEK 145
Query: 217 KCLPPVVKLQYLEDLVLEGCHGIDDDGLASVEYSCKSLKALNLSKCQ------------- 263
LP + +L+ + ++ L + SL+ + Q
Sbjct: 146 --LPELQNSSFLKIIDVDNNS------LKKLPDLPPSLEFIAAGNNQLEELPELQNLPFL 197
Query: 264 ---NISHVGLSSLIKGADYLQQLILAYSFWVSADLSKCLHNFPMLQSIKFEDCPVARSGI 320
+ L L L+ ++ + L + L L + + +
Sbjct: 198 TAIYADNNSLKKLPDLPLSLESIVAGNN-----ILEE-LPELQNLPFLTTIY--ADNNLL 249
Query: 321 KAIGNWHGSLKELSLSKCSGVTDEELSFVVQSHKELRKLDITCCRKITYASINSITKTCT 380
K + + SL+ L++ L+ + + + L LD++ + +++
Sbjct: 250 KTLPDLPPSLEALNVRDNY------LTDLPELPQSLTFLDVS------ENIFSGLSELPP 297
Query: 381 SLTSLRMECCKLVSWEAFVLIGQQCQYLEELDITENEVNDEGLKSI-SRCSKLSSLKLGI 439
+L L ++ S + LEEL+++ N+ L + + +L L
Sbjct: 298 NLYYLNASSNEIRS------LCDLPPSLEELNVSNNK-----LIELPALPPRLERLIASF 346
Query: 440 CSNITDEGLKHVGSTCSMLKELDL 463
L V LK+L +
Sbjct: 347 NH------LAEVPELPQNLKQLHV 364
|
| >1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A Length = 454 | Back alignment and structure |
|---|
Score = 45.8 bits (109), Expect = 2e-05
Identities = 53/369 (14%), Positives = 112/369 (30%), Gaps = 86/369 (23%)
Query: 101 LRSINLSRSRLFTKVGLSSLTVNCRFLTEIDLSNG--TEMGDAAAAAIAEAKNLERLWLA 158
L + +S ++L L L N FL ID+ N ++ +LE +
Sbjct: 133 LEYLGVSNNQLEK---LPELQ-NSSFLKIIDVDNNSLKKL-------PDLPPSLEFIAAG 181
Query: 159 RCKL--ITDLGIGRIAACCRKLKLLCLKWCIRVTDLGVELVALKCQEIRTLDLSYLPITE 216
+L + +L L + + L ++L+ ++ + E
Sbjct: 182 NNQLEELPELQ------NLPFLTAIYADNN-SLKKLPDLPLSLE-----SIVAGNNILEE 229
Query: 217 KCLPPVVKLQYLEDLVLEGCHGIDDDGLASVEYSCKSLKALNLSKCQ------------- 263
LP + L +L + + L ++ SL+ALN+
Sbjct: 230 --LPELQNLPFLTTIYADNNL------LKTLPDLPPSLEALNVRDNYLTDLPELPQSLTF 281
Query: 264 -NISHVGLSSLIKGADYLQQLILAYSFWVSADLSKCLHNFPMLQSIKFEDCPVARSGIKA 322
++S S L + L L + ++ P L+ + + +
Sbjct: 282 LDVSENIFSGLSELPPNLYYLNASS-----NEIRSLCDLPPSLEELNVSNNK-----LIE 331
Query: 323 IGNWHGSLKELSLSKCSGVTDEELSFVVQSHKELRKLDITCCRKITY------------- 369
+ L+ L S L+ V + + L++L + +
Sbjct: 332 LPALPPRLERLIASFNH------LAEVPELPQNLKQLHVEYNP-LREFPDIPESVEDLRM 384
Query: 370 -ASINSITKTCTSLTSLRMECCKLVSWEAFVLIGQQCQYLEELDITENEVNDEGLKSISR 428
+ + + + +L L +E L + + +E+L + V D +
Sbjct: 385 NSHLAEVPELPQNLKQLHVETNPLREFPD--IPES----VEDLRMNSERVVDPYEFAHET 438
Query: 429 CSKLSSLKL 437
KL
Sbjct: 439 TDKLEDDVF 447
|
| >4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron} Length = 876 | Back alignment and structure |
|---|
Score = 46.8 bits (111), Expect = 1e-05
Identities = 51/426 (11%), Positives = 119/426 (27%), Gaps = 79/426 (18%)
Query: 89 LSIVSSSSWKLT-LRSINLSRSRLFTKVGLSSLTVNCRFLTEIDLSNGTEMGDAAAAAIA 147
++ +S + +LT L+ I + S T ++ + N + +
Sbjct: 437 ITFISKAIQRLTKLQIIYFANSPF-TYDNIAVDWEDANSDYAKQYEN-------EELSWS 488
Query: 148 EAKNLERLWLARCKLITDL-------------------------------GIGRIAACCR 176
K+L + L C +T L +
Sbjct: 489 NLKDLTDVELYNCPNMTQLPDFLYDLPELQSLNIACNRGISAAQLKADWTRLADDEDTGP 548
Query: 177 KLKLLCLKWCIRVTDLGVELVALKCQEIRTLDLSYLPITEKCLPPVVKLQYLEDLVLEGC 236
K+++ + + + + K ++ LD + + L L DL L+
Sbjct: 549 KIQIFYMGYN-NLEEFPASASLQKMVKLGLLDCVHNKVRH--LEAFGTNVKLTDLKLDYN 605
Query: 237 H--GIDDDGLASVEYSCKSLKALNLSKCQNISHVGLSSLIKGADYLQQLILAY----SFW 290
I ++ L S + + ++ K + + +Y S
Sbjct: 606 QIEEIP----EDFCAFTDQVEGLGFSHNK-LKYIPNIFNAKSVYVMGSVDFSYNKIGSEG 660
Query: 291 VSADLSKCLHNFPMLQSIKFEDCPVARSGIKAIGNWHGSLKELSLS-----KCSGVTDEE 345
+ S + ++ + + + + + LS + +
Sbjct: 661 RNISCSMDDYKGINASTVTLSYNEIQKFPTELFATGS-PISTIILSNNLMTSIPENSLKP 719
Query: 346 LSFVVQSHKELRKLDITCCRKITYASINSITKTCTSLTSLRMECCKLVSWEAFVLIGQQC 405
++ L +D+ K+T S + T L+++ + S+ L
Sbjct: 720 KDGNYKNTYLLTTIDLRFN-KLTSLSDDFRATTLPYLSNMDVSYNCFSSFPTQPL---NS 775
Query: 406 QYLEELDITENEVNDEGL------KSISRCSKLSSLKLGIC--SNITDEGLKHVGSTCSM 457
L+ I + I+ C L L++G + ++
Sbjct: 776 SQLKAFGIRHQRDAEGNRILRQWPTGITTCPSLIQLQIGSNDIRKVDEKLTPQ------- 828
Query: 458 LKELDL 463
L LD+
Sbjct: 829 LYILDI 834
|
| >1h6u_A Internalin H; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.8A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 Length = 308 | Back alignment and structure |
|---|
Score = 45.4 bits (108), Expect = 2e-05
Identities = 34/236 (14%), Positives = 84/236 (35%), Gaps = 32/236 (13%)
Query: 203 EIRTLDLSYLPITEKCLPPVVKLQYLEDLVLEGCHGIDDDGLASVEYSCKSLKALNLSKC 262
+ +T+ L + L G +G+ +L L L
Sbjct: 20 NAIKIAAGKSNVTD--TVTQADLDGITTLSAFGTGVTTIEGVQY----LNNLIGLELKDN 73
Query: 263 QNISHV-GLSSLIKGADYLQQLILAYSFWVSADLSKCLHNFPMLQSIKFEDCPVARSGIK 321
Q I+ + L +L K + +L L+ + ++S + ++++ + + +
Sbjct: 74 Q-ITDLAPLKNLTK----ITELELSGNPL--KNVS-AIAGLQSIKTLDLTSTQI--TDVT 123
Query: 322 AIGNWHGSLKELSLSKCSGVTDEELSFVVQSHKELRKLDITCCRKITYASINSITKTCTS 381
+ +L+ L L +T+ + L+ L I +++ + + +
Sbjct: 124 PLAG-LSNLQVLYLDLNQ-ITNIS---PLAGLTNLQYLSIGNA-QVS--DLTPL-ANLSK 174
Query: 382 LTSLRMECCKLVSWEAFVLIGQQCQYLEELDITENEVNDEGLKSISRCSKLSSLKL 437
LT+L+ + K+ L E+ + N+++D + ++ S L + L
Sbjct: 175 LTTLKADDNKISDISPL----ASLPNLIEVHLKNNQISD--VSPLANTSNLFIVTL 224
|
| >1h6u_A Internalin H; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.8A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 Length = 308 | Back alignment and structure |
|---|
Score = 42.8 bits (101), Expect = 1e-04
Identities = 46/306 (15%), Positives = 96/306 (31%), Gaps = 60/306 (19%)
Query: 150 KNLERLWLARCKLITDLGIGRIAACCRKLKLLCLKWCIRVTDL-GVELVALKCQEIRTLD 208
N ++ + + + + L VT + GV+ + L+
Sbjct: 19 ANAIKIAAGKSNVTDTVTQAD----LDGITTLSAFGT-GVTTIEGVQ----YLNNLIGLE 69
Query: 209 LSYLPITEKCLPPVVKLQYLEDLVLEGCHGIDDDGLASVEYSCKSLKALNLSKCQNISHV 268
L IT+ L P+ L + +L L G + +A +S+K L+L+ Q
Sbjct: 70 LKDNQITD--LAPLKNLTKITELELSGNPLKNVSAIAG----LQSIKTLDLTSTQITDVT 123
Query: 269 GLSSLIKGADYLQQLILAYSFWVSADLSKCLHNFPMLQSIKFEDCPVARSGIKAIGNWHG 328
L+ L LQ L L N I + I +
Sbjct: 124 PLAGLSN----LQVLYLD-------------LN-----QI---------TNISPLAGLT- 151
Query: 329 SLKELSLSKCSGVTDEELSFVVQSHKELRKLDITCCRKITYASINSITKTCTSLTSLRME 388
+L+ LS+ L+ + +L L KI+ I+ + +L + ++
Sbjct: 152 NLQYLSIGNAQVSDLTPLA----NLSKLTTLKADDN-KIS--DISPLAS-LPNLIEVHLK 203
Query: 389 CCKLVSWEAFVLIGQQCQYLEELDITENEVNDEGLKSISRCSKLSSLKLGICSNITDEGL 448
++ L + +T + ++ + + + +K + I +
Sbjct: 204 NNQISDVSPL----ANTSNLFIVTLTNQTITNQPVFYNNNLVVPNVVKGPSGAPIAPATI 259
Query: 449 KHVGST 454
G+
Sbjct: 260 SDNGTY 265
|
| >1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 | Back alignment and structure |
|---|
Score = 46.0 bits (108), Expect = 3e-05
Identities = 65/384 (16%), Positives = 134/384 (34%), Gaps = 91/384 (23%)
Query: 23 ILDHLNNDPFARKSFSLTCRNFYSIESRHRKILKPLCAETLSRTS---ARYPFITQLDLS 79
+L ++ + A +F+L+C+ + +R +++ L A T + S S
Sbjct: 249 VLLNVQ-NAKAWNAFNLSCKIL--LTTRFKQVTDFLSAATTTHISLDHHSMTLTPDEVKS 305
Query: 80 LC-----------PRA----NDDALSIVSSSSWKLTLRSINLSRSRLFTKVGLSSL-TVN 123
L PR N LSI++ S +R L+ + V L T+
Sbjct: 306 LLLKYLDCRPQDLPREVLTTNPRRLSIIAES-----IRD-GLATWDNWKHVNCDKLTTII 359
Query: 124 CRFLTEIDLSNGTEMGDAAA-----AAIAEAKNLERLWLARCKLITDLGIGRIAACCRKL 178
L ++ + +M D + A I L +W +I + + K
Sbjct: 360 ESSLNVLEPAEYRKMFDRLSVFPPSAHI-PTILLSLIW---FDVIKSD-VMVVVNKLHK- 413
Query: 179 KLLCLKW----CIRVTDLGVELVALKCQEIRTL-----DLSYLPI----TEKCLPPVVK- 224
L K I + + +EL +K + L D Y ++ +PP +
Sbjct: 414 YSLVEKQPKESTISIPSIYLEL-KVKLENEYALHRSIVD-HYNIPKTFDSDDLIPPYLDQ 471
Query: 225 --LQYLEDLVLEGCHGIDDDGLASVEYSCK----SLKALNLSKCQN-ISHVGLSSLIKG- 276
++ G H L ++E+ + + L+ + I H + G
Sbjct: 472 YFYSHI------GHH------LKNIEHPERMTLFRMVFLDFRFLEQKIRHDSTAWNASGS 519
Query: 277 -ADYLQQLILAYSFWVSADLSKCLHNFPMLQSI-KFEDCPVARSGIKAIGNWHGSLKELS 334
+ LQQL Y ++ + ++ +I F + + I + + L ++
Sbjct: 520 ILNTLQQLKF-YKPYICDN---DPKYERLVNAILDF----LPKIEENLICSKYTDLLRIA 571
Query: 335 LSKCSGVTDEELSFVVQSHKELRK 358
L E+ + ++HK++++
Sbjct: 572 LM------AEDEAIFEEAHKQVQR 589
|
| >1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 | Back alignment and structure |
|---|
Score = 45.2 bits (106), Expect = 4e-05
Identities = 77/465 (16%), Positives = 135/465 (29%), Gaps = 139/465 (29%)
Query: 35 KSFSLTCRNFYSI-------ESRHRKILKPLCAETLSRTSARYPFITQLDLSLCPRANDD 87
S+ + C+ + I + +L+ L + L Q+D + R++
Sbjct: 172 LSYKVQCKMDFKIFWLNLKNCNSPETVLEML--QKLLY---------QIDPNWTSRSD-- 218
Query: 88 ALSIVSSSSWKLTLRSINLSRSRLF-TKVGLSSLTVNCRFLTEIDLSNGTEMGDAAAAAI 146
SS+ KL + SI RL +K + L V + + A
Sbjct: 219 -----HSSNIKLRIHSIQAELRRLLKSKPYENCLLV-------LL--------NVQNAKA 258
Query: 147 AEAKNLERLWLARCK-LIT--DLGIGRIAACCRKLKLLCLKWCIRVTDLGVELVALKCQE 203
A NL CK L+T + + + L + L E
Sbjct: 259 WNAFNL------SCKILLTTRFKQVTDFLSAATTTHI----------SLDHHSMTLTPDE 302
Query: 204 IRTLDLSYLPITEKCLPPVVKLQYLEDLVLEGCHGIDDDGLASVEYSCKSLKALNLSKCQ 263
+++L L YL + LP V L DGLA+ + K +N K
Sbjct: 303 VKSLLLKYLDCRPQDLPREVLT--TNPRRLSIIAESIRDGLATWDN----WKHVNCDKLT 356
Query: 264 NISHVGLSSLIKGADYLQQLILAYSFWVSADLSKCLHNFPMLQSIKFEDCPVARSGIKAI 323
I L+ L +++ F LS FP +
Sbjct: 357 TIIESSLNVL--EPAEYRKM-----FD---RLSV----FP-------PSAHI-------- 387
Query: 324 GNWHGSLKELSLSKCSGVTDEELSFVVQSHKELRKLDITCCRKITYASINSI----TKTC 379
LSL + + + V + HK + K + SI SI
Sbjct: 388 -----PTILLSLIWFDVIKSDVMVVVNKLHK---YSLVEKQPKESTISIPSIYLELKVKL 439
Query: 380 TSLTSL------RMECCKLVSWEAFVL----------IG---QQCQYLEELDITENEVND 420
+ +L K + + IG + ++ E + + D
Sbjct: 440 ENEYALHRSIVDHYNIPKTFDSDDLIPPYLDQYFYSHIGHHLKNIEHPERMTLFRMVFLD 499
Query: 421 EGLKSISRCSKLSSLKLGICSNITDEGLKHVGSTCSMLKELDLYR 465
+ + + K+ GS + L++L Y+
Sbjct: 500 --FRFLEQ--KI---------RHDSTAWNASGSILNTLQQLKFYK 531
|
| >4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV} Length = 328 | Back alignment and structure |
|---|
Score = 44.6 bits (106), Expect = 4e-05
Identities = 48/335 (14%), Positives = 85/335 (25%), Gaps = 81/335 (24%)
Query: 149 AKNLERLWLARCKLITDL--GIGRIAACCRKLKLLCLKWCIRVTDLGVELVALKCQEIRT 206
+ E L+ + + + ++ + +
Sbjct: 11 SSGRENLYFQGSTALRPYHDVLSQ----WQRHYNADRNRWHSAWRQA-NSNNPQIETRTG 65
Query: 207 LDLSYLPITEKCLPPVVKLQYLEDLVLEGCHGIDDDGLASVEYS---CKSLKALNLSKCQ 263
L + L L L L+ + +
Sbjct: 66 RALKATADLLEDA----TQPGRVALELRSVP------LPQFPDQAFRLSHLQHMTIDAAG 115
Query: 264 NISHVGLSSLIKGADYLQQLILAYSFWVSADLSKC-LHNFPMLQSIKFEDCPVARSGIKA 322
L L L + L++ L P +
Sbjct: 116 ------LMELPDTMQQFAGL-------ETLTLARNPLRALP-----------------AS 145
Query: 323 IGNWHGSLKELSLSKCS-------GVTDEELSFVVQSHKELRKLDITCCRKITY--ASIN 373
I + + L+ELS+ C + + S Q L+ L + I ASI
Sbjct: 146 IASLN-RLRELSIRACPELTELPEPLASTDASGEHQGLVNLQSLRLEWT-GIRSLPASIA 203
Query: 374 SITKTCTSLTSLRMECCKLVSWEAFVL---IGQQCQYLEELDITENEVNDEGLKSISRCS 430
+ +L SL++ L + L I LEELD+ +
Sbjct: 204 N----LQNLKSLKIRNSPLSA-----LGPAIH-HLPKLEELDLRGCTALRNYPPIFGGRA 253
Query: 431 KLSSLKLGICSNITD--EGLKHVGSTCSMLKELDL 463
L L L CSN+ + + L++LDL
Sbjct: 254 PLKRLILKDCSNLLTLPLDIHR----LTQLEKLDL 284
|
| >3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens} Length = 844 | Back alignment and structure |
|---|
Score = 44.8 bits (106), Expect = 5e-05
Identities = 47/285 (16%), Positives = 84/285 (29%), Gaps = 30/285 (10%)
Query: 202 QEIRTLDLSYLPITEKCLPPVV--KLQYLEDLVLEGCH--GIDDDGLASVEYSCKSLKAL 257
++++ L+L + L L L L + D L L
Sbjct: 48 EQLQLLELGSQYTPLT-IDKEAFRNLPNLRILDLGSSKIYFLHPDAFQG----LFHLFEL 102
Query: 258 NLSKCQNISHVGLSSLIKGADYLQQLILAYSFWVSADLSKCLHNFPMLQSIKFEDCPVAR 317
L C V + L +L L+ + S L L+SI F +
Sbjct: 103 RLYFCGLSDAVLKDGYFRNLKALTRLDLSKNQIRSLYLHPSFGKLNSLKSIDFSSNQIFL 162
Query: 318 SGIKAIGNWHG-SLKELSLSKCSGVTDEELSFV----VQSHKELRKLDITCCR---KITY 369
+ G +L SL+ S + + + + L LD++ IT
Sbjct: 163 VCEHELEPLQGKTLSFFSLAANSLYSRVSVDWGKCMNPFRNMVLEILDVSGNGWTVDITG 222
Query: 370 ASINSITKT-------CTSLTSLRMECCKLVSWEAFVLIGQQCQYLEELDITENEVNDEG 422
N+I+K+ + + + G + LD++ V
Sbjct: 223 NFSNAISKSQAFSLILAHHIMGAGFGFHNIKDPDQNTFAGLARSSVRHLDLSHGFVFSLN 282
Query: 423 LKSISRCSKLSSLKLGIC--SNITDEGLKHVGSTCSMLKELDLYR 465
+ L L L + I DE + + L+ L+L
Sbjct: 283 SRVFETLKDLKVLNLAYNKINKIADEAFYGLDN----LQVLNLSY 323
|
| >3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens} Length = 844 | Back alignment and structure |
|---|
Score = 43.3 bits (102), Expect = 1e-04
Identities = 60/383 (15%), Positives = 122/383 (31%), Gaps = 43/383 (11%)
Query: 101 LRSINLSRSRLFTKVGLSSLTVNCRFLTEIDLSNGTEMGDAAAAAIAEAKNLERLWLARC 160
L + L L V N + LT +DLS + + +L+ + +
Sbjct: 99 LFELRLYFCGLSDAVLKDGYFRNLKALTRLDLSKNQIRSLYLHPSFGKLNSLKSIDFSSN 158
Query: 161 KLITDLGIGRIAA-CCRKLKLLCLK----WCIRVTDLGVELVALKCQEIRTLDLSYLPIT 215
+ I + + + L L + D G + + + LD+S T
Sbjct: 159 Q-IFLVCEHELEPLQGKTLSFFSLAANSLYSRVSVDWGKCMNPFRNMVLEILDVSGNGWT 217
Query: 216 EK---------CLPPVVKLQYLEDLVLEGCHG-----IDDDGLASVEYSCKSLKALNLSK 261
L ++ G D + A + S S++ L+LS
Sbjct: 218 VDITGNFSNAISKSQAFSLILAHHIMGAGFGFHNIKDPDQNTFAGLARS--SVRHLDLSH 275
Query: 262 CQNISHVGLSSLIKGADYLQQLILAYSFWVSADLSKCLHNFPMLQSIKFEDCPVARSGIK 321
+ + S + + L+ L LAY+ + + LQ + +
Sbjct: 276 G-FVFSL-NSRVFETLKDLKVLNLAYNKINKIA-DEAFYGLDNLQVLNLSYNLLGELYSS 332
Query: 322 AIGNWHGSLKELSLSKCSGVTDEELSFVVQSHKELRKLDITCCRKITYASINSITKTCTS 381
+ + L K ++ +F + ++L+ LD+ + +I S
Sbjct: 333 NFYGLP-KVAYIDLQKNHIAIIQDQTF--KFLEKLQTLDLRDNA------LTTIH-FIPS 382
Query: 382 LTSLRMECCKLVSWEAFVLIGQQCQYLEELDITENE-VNDEGLKSISRCSKLSSLKLGIC 440
+ + + KLV+ + + + ++EN N + L + R L L L
Sbjct: 383 IPDIFLSGNKLVT------LPKINLTANLIHLSENRLENLDILYFLLRVPHLQILILN-Q 435
Query: 441 SNITDEGLKHVGSTCSMLKELDL 463
+ + S L++L L
Sbjct: 436 NRFSSCSGDQTPSENPSLEQLFL 458
|
| >2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens} Length = 570 | Back alignment and structure |
|---|
Score = 43.9 bits (104), Expect = 9e-05
Identities = 70/402 (17%), Positives = 130/402 (32%), Gaps = 62/402 (15%)
Query: 68 ARYPFITQLDLSLCPRANDDALSIVSSSS-WKLT-LRSINLSRSRLFTKVGLSSLTVNCR 125
+P + LDLS C + + + L+ L ++ L+ + + + L + +
Sbjct: 49 FSFPELQVLDLSRCE------IQTIEDGAYQSLSHLSTLILTGNPI-QSLALGAFS-GLS 100
Query: 126 FLTEIDLSNGTEMGDAAAAAIAEAKNLERLWLARCKLITDLGIGRIAACCRKLKLLCLK- 184
L ++ T + I K L+ L +A I + + L+ L L
Sbjct: 101 SLQKLVAVE-TNLASLENFPIGHLKTLKELNVAHNL-IQSFKLPEYFSNLTNLEHLDLSS 158
Query: 185 ---WCIRVTDLGVELVALKCQEIRTLDLSYLPITEKCLPPVV-KLQYLEDLVLEGCHGID 240
I TDL V L + + +LDLS P+ + P K L L L
Sbjct: 159 NKIQSIYCTDLRV-LHQMPLLNL-SLDLSLNPMNF--IQPGAFKEIRLHKLTLRNN-FDS 213
Query: 241 DDGLASVEYSCKSLKALNLSKCQNISHVGLSSLIKGAD------YLQQLILAYSFWVSAD 294
+ + + L+ L + + L K A +++ LAY + D
Sbjct: 214 LNVMKTCIQGLAGLEVHRLVLGEFRNEGNLEKFDKSALEGLCNLTIEEFRLAYLDYYLDD 273
Query: 295 LSKCLHNFPMLQSIKFEDCPVARSGIKAIGNWHG--SLKELSLSKCS-----GVTDEELS 347
+ + + S I+ + ++ + L L C + + L
Sbjct: 274 IIDLFNCLTNVSSFSLVSVT-----IERVKDFSYNFGWQHLELVNCKFGQFPTLKLKSLK 328
Query: 348 FVVQSH------------KELRKLDITCCRKITYASINSITKTCTSLTSLRMECCKLVS- 394
+ + L LD++ + TSL L + +++
Sbjct: 329 RLTFTSNKGGNAFSEVDLPSLEFLDLSRNGLSFKGCCSQSDFGTTSLKYLDLSFNGVITM 388
Query: 395 WEAFVLIGQQCQYLEELDITENEVNDEGLKSISRCSKLSSLK 436
F + LE LD + LK +S S SL+
Sbjct: 389 SSNF----LGLEQLEHLDFQHSN-----LKQMSEFSVFLSLR 421
|
| >3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium} Length = 622 | Back alignment and structure |
|---|
Score = 41.8 bits (98), Expect = 4e-04
Identities = 56/292 (19%), Positives = 94/292 (32%), Gaps = 67/292 (22%)
Query: 150 KNLERLWLARCKLITDL--GIGRIAACCRKLKLLCLKWCIRVTDLGVELVALKCQEIRTL 207
L + L T L + + L + +T L L RTL
Sbjct: 40 NGNAVLNVGESGL-TTLPDCLPA------HITTLVIPDN-NLTSLPALPPEL-----RTL 86
Query: 208 DLSYLPITEKCLPPVV-KLQYLEDLVLEGCHGIDDDGLASVEYSCKSLKALNLSKCQNIS 266
++S +T LP + L L L + L L + Q
Sbjct: 87 EVSGNQLTS--LPVLPPGLLELSIFSN---------PLTHLPALPSGLCKLWIFGNQ--- 132
Query: 267 HVGLSSLIKGADYLQQLILAYSFWVSADLSKCLHNFPMLQSIKFEDCPVARSGIKAIGNW 326
L+SL LQ+L ++ + L+ L + + + ++
Sbjct: 133 ---LTSLPVLPPGLQELSVSDNQ-----LASLPALPSELCKLWAYNNQ-----LTSLPML 179
Query: 327 HGSLKELSLSKCSGVTDEELSFVVQSHKELRKLDITCCRKITYASINSITKTCTSLTSLR 386
L+ELS+S +L+ + EL KL R + S+ + L L
Sbjct: 180 PSGLQELSVSDN------QLASLPTLPSELYKLWAYNNR------LTSLPALPSGLKELI 227
Query: 387 MECCKLVSWEAFVLIGQQCQYLEELDITENEVNDEGLKSISR-CSKLSSLKL 437
+ +L S L + L+EL ++ N L S+ S L SL +
Sbjct: 228 VSGNRLTSLPV--LPSE----LKELMVSGN-----RLTSLPMLPSGLLSLSV 268
|
| >1xeu_A Internalin C; cellular invasion, leucine-rich repeat, cell invasion; 2.05A {Listeria monocytogenes} Length = 263 | Back alignment and structure |
|---|
Score = 40.8 bits (96), Expect = 5e-04
Identities = 32/178 (17%), Positives = 61/178 (34%), Gaps = 28/178 (15%)
Query: 101 LRSINLSRSRLFTKVGLSSLTVNCRFLTEIDLSN--GTEMGDAAAAAIAEAKNLERLWLA 158
NL + + V L+ + + N + A + NL+ L L+
Sbjct: 21 AVKQNLGKQSVTDLVSQKELS----GVQNFNGDNSNIQSL-----AGMQFFTNLKELHLS 71
Query: 159 RCKLITDL-GIGRIAACCRKLKLLCLKWCIRVTDLGVELVALKCQEIRTLDLSYLPITEK 217
+ I+DL + KL+ L + R+ +L + + L L + +
Sbjct: 72 HNQ-ISDLSPLKD----LTKLEELSVNRN-RLKNLN----GIPSACLSRLFLDNNELRD- 120
Query: 218 CLPPVVKLQYLEDLVLEGCHGIDDDGLASVEYSCKSLKALNLSKCQNISHVGLSSLIK 275
++ L+ LE L + L L+ L+L + + GL+ L K
Sbjct: 121 -TDSLIHLKNLEILSIRNNKLKSIVMLG----FLSKLEVLDLHGNEITNTGGLTRLKK 173
|
| >3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A* Length = 768 | Back alignment and structure |
|---|
Score = 41.4 bits (98), Expect = 5e-04
Identities = 84/381 (22%), Positives = 126/381 (33%), Gaps = 98/381 (25%)
Query: 101 LRSINLSRSRLFTKVG-LSSLTVNCRFLTEIDLSNGTEMGDAAAAAIAEAKNLERLWLAR 159
+ SI+LS L +SS ++ L + LSN G + + + +L L L+R
Sbjct: 52 VTSIDLSSKPLNVGFSAVSSSLLSLTGLESLFLSNSHING--SVSGFKCSASLTSLDLSR 109
Query: 160 CKLITDLGIGRIAACCRKLKLLCLKWCIRVTDLGVELVALKCQEIRTLDLSY--LPITEK 217
L G + +T LG C ++ L++S L K
Sbjct: 110 NSLS-----GPVTT---------------LTSLG------SCSGLKFLNVSSNTLDFPGK 143
Query: 218 CLPPVVKLQYLEDLVLEGCH--GIDDDGLASVEYSCKSLKALNLSKCQNISHVGLSSLIK 275
+ +KL LE L L G + G + C LK L +S + V +S +
Sbjct: 144 -VSGGLKLNSLEVLDLSANSISGANVVGWVLSD-GCGELKHLAISGNKISGDVDVSRCVN 201
Query: 276 GADYLQQLILAYSFWVSADLSKCLHNFPMLQSIKFEDCPVARSG-IKAIGNWHGSLKELS 334
L+ L D+S NF S I +G+ +L+ L
Sbjct: 202 ----LEFL----------DVSSN--NF---------------STGIPFLGDCS-ALQHLD 229
Query: 335 LSKC--SGVTDEELSFVVQSHKELRKLDITCCRKITYASINSITKT-----CTSLTSLRM 387
+S SG +S + EL+ L+I S N SL L +
Sbjct: 230 ISGNKLSGDFSRAIS----TCTELKLLNI---------SSNQFVGPIPPLPLKSLQYLSL 276
Query: 388 ECCKLV----SWEAFVLIGQQCQYLEELDITENEVNDEGLKSISRCSKLSSLKLGICSNI 443
K + + C L LD++ N CS L SL L N
Sbjct: 277 AENKFTGEIPDF-----LSGACDTLTGLDLSGNHFYGAVPPFFGSCSLLESLALSSN-NF 330
Query: 444 TDEGLKHVGSTCSMLKELDLY 464
+ E LK LDL
Sbjct: 331 SGELPMDTLLKMRGLKVLDLS 351
|
Structure Templates Detected by HHsearch
Original result of HHsearch against PDB70 database
| ID | Alignment Graph | Length |
Definition |
Probability |
| Query | 468 | |||
| 2p1m_B | 594 | Transport inhibitor response 1 protein; F-BOX, leu | 100.0 | |
| 3ogk_B | 592 | Coronatine-insensitive protein 1; leucine rich rep | 100.0 | |
| 2p1m_B | 594 | Transport inhibitor response 1 protein; F-BOX, leu | 100.0 | |
| 3ogk_B | 592 | Coronatine-insensitive protein 1; leucine rich rep | 100.0 | |
| 1z7x_W | 461 | Ribonuclease inhibitor; leucine-rich repeat, enzym | 99.97 | |
| 1z7x_W | 461 | Ribonuclease inhibitor; leucine-rich repeat, enzym | 99.97 | |
| 2ast_B | 336 | S-phase kinase-associated protein 2; SCF-substrate | 99.96 | |
| 3t6q_A | 606 | CD180 antigen; protein-protein complex, leucine ri | 99.93 | |
| 3t6q_A | 606 | CD180 antigen; protein-protein complex, leucine ri | 99.93 | |
| 3rgz_A | 768 | Protein brassinosteroid insensitive 1; phytohormon | 99.93 | |
| 3rgz_A | 768 | Protein brassinosteroid insensitive 1; phytohormon | 99.93 | |
| 4fmz_A | 347 | Internalin; leucine rich repeat, structural genomi | 99.93 | |
| 2z81_A | 549 | CD282 antigen, TOLL-like receptor 2, variable lymp | 99.92 | |
| 4fmz_A | 347 | Internalin; leucine rich repeat, structural genomi | 99.92 | |
| 3vq2_A | 606 | TLR4, TOLL-like receptor 4; leucine rich repeat MD | 99.92 | |
| 1o6v_A | 466 | Internalin A; bacterial infection, extracellular r | 99.92 | |
| 3v47_A | 455 | TOLL-like receptor 5B and variable lymphocyte REC | 99.91 | |
| 2z7x_B | 520 | TOLL-like receptor 1, variable lymphocyte recepto; | 99.91 | |
| 1o6v_A | 466 | Internalin A; bacterial infection, extracellular r | 99.9 | |
| 2ast_B | 336 | S-phase kinase-associated protein 2; SCF-substrate | 99.9 | |
| 2z63_A | 570 | TOLL-like receptor 4, variable lymphocyte recepto; | 99.9 | |
| 4eco_A | 636 | Uncharacterized protein; leucine-rich repeats, pro | 99.9 | |
| 1ziw_A | 680 | TOLL-like receptor 3; innate immunity, immune syst | 99.9 | |
| 1ziw_A | 680 | TOLL-like receptor 3; innate immunity, immune syst | 99.89 | |
| 3vq2_A | 606 | TLR4, TOLL-like receptor 4; leucine rich repeat MD | 99.89 | |
| 3v47_A | 455 | TOLL-like receptor 5B and variable lymphocyte REC | 99.89 | |
| 2z81_A | 549 | CD282 antigen, TOLL-like receptor 2, variable lymp | 99.89 | |
| 4ecn_A | 876 | Leucine-rich repeat protein; leucine-rich repeats, | 99.89 | |
| 3a79_B | 562 | TLR6, VLRB.59, TOLL-like receptor 6, variable lymp | 99.89 | |
| 4eco_A | 636 | Uncharacterized protein; leucine-rich repeats, pro | 99.88 | |
| 3j0a_A | 844 | TOLL-like receptor 5; membrane protein, leucine-ri | 99.87 | |
| 2ca6_A | 386 | RAN GTPase-activating protein 1; GAP, GTPase activ | 99.87 | |
| 3o6n_A | 390 | APL1; leucine-rich repeat, protein binding; HET: N | 99.87 | |
| 2id5_A | 477 | Lingo-1, leucine rich repeat neuronal 6A; CNS-spec | 99.87 | |
| 2ca6_A | 386 | RAN GTPase-activating protein 1; GAP, GTPase activ | 99.86 | |
| 2z7x_B | 520 | TOLL-like receptor 1, variable lymphocyte recepto; | 99.86 | |
| 4ecn_A | 876 | Leucine-rich repeat protein; leucine-rich repeats, | 99.86 | |
| 2z63_A | 570 | TOLL-like receptor 4, variable lymphocyte recepto; | 99.86 | |
| 3j0a_A | 844 | TOLL-like receptor 5; membrane protein, leucine-ri | 99.86 | |
| 2id5_A | 477 | Lingo-1, leucine rich repeat neuronal 6A; CNS-spec | 99.85 | |
| 3bz5_A | 457 | Internalin-J, INLJ; leucine rich repeat (LRR), cys | 99.85 | |
| 3oja_B | 597 | Anopheles plasmodium-responsive leucine-rich REPE | 99.85 | |
| 3o6n_A | 390 | APL1; leucine-rich repeat, protein binding; HET: N | 99.84 | |
| 3bz5_A | 457 | Internalin-J, INLJ; leucine rich repeat (LRR), cys | 99.83 | |
| 3oja_B | 597 | Anopheles plasmodium-responsive leucine-rich REPE | 99.82 | |
| 3a79_B | 562 | TLR6, VLRB.59, TOLL-like receptor 6, variable lymp | 99.82 | |
| 4g8a_A | 635 | TOLL-like receptor 4; leucine rich repeat MD-2 rel | 99.79 | |
| 3goz_A | 362 | Leucine-rich repeat-containing protein; LEGL7, NES | 99.78 | |
| 2z80_A | 353 | TOLL-like receptor 2, variable lymphocyte recepto; | 99.75 | |
| 1ogq_A | 313 | PGIP-2, polygalacturonase inhibiting protein; inhi | 99.75 | |
| 3goz_A | 362 | Leucine-rich repeat-containing protein; LEGL7, NES | 99.74 | |
| 1xku_A | 330 | Decorin; proteoglycan, leucine-rich repeat, struct | 99.72 | |
| 3o53_A | 317 | Protein LRIM1, AGAP006348-PA; leucine-rich repeat, | 99.71 | |
| 1xku_A | 330 | Decorin; proteoglycan, leucine-rich repeat, struct | 99.71 | |
| 4g8a_A | 635 | TOLL-like receptor 4; leucine rich repeat MD-2 rel | 99.71 | |
| 2z66_A | 306 | Variable lymphocyte receptor B, TOLL-like recepto; | 99.7 | |
| 3zyj_A | 440 | Leucine-rich repeat-containing protein 4C; cell ad | 99.69 | |
| 3zyi_A | 452 | Leucine-rich repeat-containing protein 4; cell adh | 99.69 | |
| 2ft3_A | 332 | Biglycan; proteoglycan, dimer interface, structura | 99.69 | |
| 1ogq_A | 313 | PGIP-2, polygalacturonase inhibiting protein; inhi | 99.69 | |
| 1wwl_A | 312 | Monocyte differentiation antigen CD14; LPS, immune | 99.69 | |
| 2z80_A | 353 | TOLL-like receptor 2, variable lymphocyte recepto; | 99.68 | |
| 2z66_A | 306 | Variable lymphocyte receptor B, TOLL-like recepto; | 99.68 | |
| 1jl5_A | 454 | Outer protein YOPM; leucine-rich repeat, molecular | 99.67 | |
| 1jl5_A | 454 | Outer protein YOPM; leucine-rich repeat, molecular | 99.67 | |
| 2ft3_A | 332 | Biglycan; proteoglycan, dimer interface, structura | 99.66 | |
| 3oja_A | 487 | Leucine-rich immune molecule 1; coiled-coil, helix | 99.66 | |
| 4fcg_A | 328 | Uncharacterized protein; structural genomics, PSI- | 99.65 | |
| 3o53_A | 317 | Protein LRIM1, AGAP006348-PA; leucine-rich repeat, | 99.65 | |
| 3zyi_A | 452 | Leucine-rich repeat-containing protein 4; cell adh | 99.63 | |
| 3zyj_A | 440 | Leucine-rich repeat-containing protein 4C; cell ad | 99.62 | |
| 4fcg_A | 328 | Uncharacterized protein; structural genomics, PSI- | 99.62 | |
| 1wwl_A | 312 | Monocyte differentiation antigen CD14; LPS, immune | 99.61 | |
| 1ozn_A | 285 | Reticulon 4 receptor; NOGO receptor, MAD, myelinat | 99.61 | |
| 1ozn_A | 285 | Reticulon 4 receptor; NOGO receptor, MAD, myelinat | 99.6 | |
| 3g06_A | 622 | SSPH2 (leucine-rich repeat protein); E3 ubiquitin | 99.6 | |
| 4glp_A | 310 | Monocyte differentiation antigen CD14; alpha beta | 99.6 | |
| 3g06_A | 622 | SSPH2 (leucine-rich repeat protein); E3 ubiquitin | 99.59 | |
| 3un9_A | 372 | NLR family member X1; leucine rich repeat (LRR), a | 99.57 | |
| 3oja_A | 487 | Leucine-rich immune molecule 1; coiled-coil, helix | 99.56 | |
| 4glp_A | 310 | Monocyte differentiation antigen CD14; alpha beta | 99.55 | |
| 3un9_A | 372 | NLR family member X1; leucine rich repeat (LRR), a | 99.54 | |
| 1h6u_A | 308 | Internalin H; cell adhesion, leucine rich repeat, | 99.53 | |
| 1h6u_A | 308 | Internalin H; cell adhesion, leucine rich repeat, | 99.52 | |
| 2z62_A | 276 | TOLL-like receptor 4, variable lymphocyte recepto; | 99.49 | |
| 3e4g_A | 176 | ATP synthase subunit S, mitochondrial; leucine-ric | 99.49 | |
| 2z62_A | 276 | TOLL-like receptor 4, variable lymphocyte recepto; | 99.44 | |
| 1p9a_G | 290 | Platelet glycoprotein IB alpha chain precursor; pl | 99.44 | |
| 2o6q_A | 270 | Variable lymphocyte receptor A; leucine-rich repea | 99.44 | |
| 3e4g_A | 176 | ATP synthase subunit S, mitochondrial; leucine-ric | 99.43 | |
| 3rfs_A | 272 | Internalin B, repeat modules, variable lymphocyte | 99.42 | |
| 4ezg_A | 197 | Putative uncharacterized protein; internalin-A, le | 99.39 | |
| 1h6t_A | 291 | Internalin B; cell adhesion, leucine rich repeat, | 99.38 | |
| 3rfs_A | 272 | Internalin B, repeat modules, variable lymphocyte | 99.38 | |
| 2xwt_C | 239 | Thyrotropin receptor; signaling protein-immune sys | 99.32 | |
| 4ezg_A | 197 | Putative uncharacterized protein; internalin-A, le | 99.32 | |
| 1m9s_A | 605 | Internalin B; cell invasion, GW domains, SH3 domai | 99.31 | |
| 1h6t_A | 291 | Internalin B; cell adhesion, leucine rich repeat, | 99.3 | |
| 2xwt_C | 239 | Thyrotropin receptor; signaling protein-immune sys | 99.3 | |
| 2o6q_A | 270 | Variable lymphocyte receptor A; leucine-rich repea | 99.29 | |
| 3m19_A | 251 | Variable lymphocyte receptor A diversity region; a | 99.24 | |
| 3m19_A | 251 | Variable lymphocyte receptor A diversity region; a | 99.23 | |
| 1m9s_A | 605 | Internalin B; cell invasion, GW domains, SH3 domai | 99.22 | |
| 1p9a_G | 290 | Platelet glycoprotein IB alpha chain precursor; pl | 99.22 | |
| 2ra8_A | 362 | Uncharacterized protein Q64V53_bacfr; WGR domain, | 99.21 | |
| 2ra8_A | 362 | Uncharacterized protein Q64V53_bacfr; WGR domain, | 99.2 | |
| 3sb4_A | 329 | Hypothetical leucine rich repeat protein; LRR, rig | 99.2 | |
| 1io0_A | 185 | Tropomodulin; LRR protein, right-handed super-heli | 99.18 | |
| 2je0_A | 149 | Acidic leucine-rich nuclear phosphoprotein 32 FAM | 99.17 | |
| 1xeu_A | 263 | Internalin C; cellular invasion, leucine-rich repe | 99.15 | |
| 2ell_A | 168 | Acidic leucine-rich nuclear phosphoprotein 32 FAM | 99.14 | |
| 3sb4_A | 329 | Hypothetical leucine rich repeat protein; LRR, rig | 99.14 | |
| 1dce_A | 567 | Protein (RAB geranylgeranyltransferase alpha subun | 99.1 | |
| 1io0_A | 185 | Tropomodulin; LRR protein, right-handed super-heli | 99.1 | |
| 4ay9_X | 350 | Follicle-stimulating hormone receptor; hormone-rec | 99.09 | |
| 2je0_A | 149 | Acidic leucine-rich nuclear phosphoprotein 32 FAM | 99.07 | |
| 1xeu_A | 263 | Internalin C; cellular invasion, leucine-rich repe | 99.05 | |
| 1fs1_A | 53 | SKP2 F-BOX, cyclin A/CDK2-associated P19; F-BOX, L | 99.01 | |
| 2v70_A | 220 | SLIT-2, SLIT homolog 2 protein N-product; neurogen | 99.0 | |
| 4ay9_X | 350 | Follicle-stimulating hormone receptor; hormone-rec | 98.98 | |
| 2o6s_A | 208 | Variable lymphocyte receptor B; leucine-rich repea | 98.97 | |
| 2ell_A | 168 | Acidic leucine-rich nuclear phosphoprotein 32 FAM | 98.97 | |
| 2xot_A | 361 | Amphoterin-induced protein 1; cell adhesion, neuro | 98.96 | |
| 1ds9_A | 198 | Outer arm dynein; leucine-rich repeat, beta-BETA-a | 98.94 | |
| 3cvr_A | 571 | Invasion plasmid antigen; leucine rich repeat and | 98.94 | |
| 1a9n_A | 176 | U2A', U2A'; complex (nuclear protein/RNA), RNA, sn | 98.92 | |
| 2v9t_B | 220 | SLIT homolog 2 protein N-product; structural prote | 98.9 | |
| 3cvr_A | 571 | Invasion plasmid antigen; leucine rich repeat and | 98.89 | |
| 2o6s_A | 208 | Variable lymphocyte receptor B; leucine-rich repea | 98.88 | |
| 1dce_A | 567 | Protein (RAB geranylgeranyltransferase alpha subun | 98.87 | |
| 2xot_A | 361 | Amphoterin-induced protein 1; cell adhesion, neuro | 98.86 | |
| 1a9n_A | 176 | U2A', U2A'; complex (nuclear protein/RNA), RNA, sn | 98.83 | |
| 2v70_A | 220 | SLIT-2, SLIT homolog 2 protein N-product; neurogen | 98.81 | |
| 2v9t_B | 220 | SLIT homolog 2 protein N-product; structural prote | 98.8 | |
| 1ds9_A | 198 | Outer arm dynein; leucine-rich repeat, beta-BETA-a | 98.78 | |
| 3e6j_A | 229 | Variable lymphocyte receptor diversity region; var | 98.75 | |
| 3e6j_A | 229 | Variable lymphocyte receptor diversity region; var | 98.73 | |
| 4fs7_A | 394 | Uncharacterized protein; leucine-rich repeats, pro | 98.64 | |
| 2wfh_A | 193 | SLIT homolog 2 protein C-product; developmental pr | 98.64 | |
| 1w8a_A | 192 | SLIT protein; signaling protein, secreted protein, | 98.6 | |
| 1pgv_A | 197 | TMD-1, tropomodulin TMD-1; structural genomics, PS | 98.55 | |
| 1w8a_A | 192 | SLIT protein; signaling protein, secreted protein, | 98.5 | |
| 2o6r_A | 177 | Variable lymphocyte receptor B; leucine-rich repea | 98.49 | |
| 1pgv_A | 197 | TMD-1, tropomodulin TMD-1; structural genomics, PS | 98.48 | |
| 4b8c_D | 727 | Glucose-repressible alcohol dehydrogenase transcr | 98.42 | |
| 2wfh_A | 193 | SLIT homolog 2 protein C-product; developmental pr | 98.42 | |
| 4b8c_D | 727 | Glucose-repressible alcohol dehydrogenase transcr | 98.34 | |
| 4fdw_A | 401 | Leucine rich hypothetical protein; putative cell s | 98.34 | |
| 4fdw_A | 401 | Leucine rich hypothetical protein; putative cell s | 98.31 | |
| 4fs7_A | 394 | Uncharacterized protein; leucine-rich repeats, pro | 98.28 | |
| 2o6r_A | 177 | Variable lymphocyte receptor B; leucine-rich repea | 98.27 | |
| 3g39_A | 170 | Variable lymphocyte receptor VLRB.2D; antibody, X- | 98.16 | |
| 2r9u_A | 174 | Variable lymphocyte receptor; adaptive immunity, V | 98.14 | |
| 2e31_A | 297 | FBS1, F-box only protein 2; ubiquitin, SCF, ubiqui | 98.09 | |
| 3l2o_B | 312 | F-box only protein 4; small G protein fold, UBL co | 97.98 | |
| 3rw6_A | 267 | Nuclear RNA export factor 1; retroviral constituti | 97.93 | |
| 4gt6_A | 394 | Cell surface protein; leucine rich repeats, putati | 97.92 | |
| 3g39_A | 170 | Variable lymphocyte receptor VLRB.2D; antibody, X- | 97.88 | |
| 2r9u_A | 174 | Variable lymphocyte receptor; adaptive immunity, V | 97.86 | |
| 4gt6_A | 394 | Cell surface protein; leucine rich repeats, putati | 97.84 | |
| 3v7d_B | 464 | Cell division control protein 4; WD 40 domain, pho | 97.68 | |
| 2ifg_A | 347 | High affinity nerve growth factor receptor; TRK, T | 97.65 | |
| 3rw6_A | 267 | Nuclear RNA export factor 1; retroviral constituti | 97.52 | |
| 2ifg_A | 347 | High affinity nerve growth factor receptor; TRK, T | 97.39 | |
| 1p22_A | 435 | F-BOX/WD-repeat protein 1A; ubiquitination, degrad | 97.39 | |
| 2ovr_B | 445 | FBW7, F-BOX/WD repeat protein 7, F-box PROT; WD40 | 97.36 | |
| 4h09_A | 379 | Hypothetical leucine rich repeat protein; two LRR_ | 96.69 | |
| 4h09_A | 379 | Hypothetical leucine rich repeat protein; two LRR_ | 93.19 | |
| 3rfe_A | 130 | Platelet glycoprotein IB beta chain; platelet surf | 91.3 | |
| 3rfe_A | 130 | Platelet glycoprotein IB beta chain; platelet surf | 82.22 |
| >2p1m_B Transport inhibitor response 1 protein; F-BOX, leucine rich repeat, signaling protein; HET: IHP; 1.80A {Arabidopsis thaliana} PDB: 2p1n_B* 2p1o_B* 2p1p_B* 2p1q_B* 3c6n_B* 3c6o_B* 3c6p_B* | Back alignment and structure |
|---|
Probab=100.00 E-value=6e-44 Score=350.16 Aligned_cols=446 Identities=20% Similarity=0.265 Sum_probs=237.4
Q ss_pred CCCcccCcHHHHHHHHhhhcCChhhhhHHhhhhhhHHHHHHhhhhhccccc--cchHHHHhccCCCCcEEecCCCCCCCh
Q 012207 9 SNPFDFLSEEIIFNILDHLNNDPFARKSFSLTCRNFYSIESRHRKILKPLC--AETLSRTSARYPFITQLDLSLCPRAND 86 (468)
Q Consensus 9 ~~~~~~LP~eil~~I~~~~l~~~~~~~~~~~v~~~w~~~~~~~~~~~~~~~--~~~~~~~~~~~~~l~~l~l~~~~~~~~ 86 (468)
.+.|+.||+||+.+||+ |+++.+|+.++++|||+|+++....+..+.... .......+.++++++.++++++..+.+
T Consensus 3 ~d~~~~LPdevL~~If~-~L~~~~d~~~~s~vck~W~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~L~~L~L~~~~~~~~ 81 (594)
T 2p1m_B 3 KRIALSFPEEVLEHVFS-FIQLDKDRNSVSLVCKSWYEIERWCRRKVFIGNCYAVSPATVIRRFPKVRSVELKGKPHFAD 81 (594)
T ss_dssp -------CHHHHHHHHH-TCCCHHHHHHHHTSCHHHHHHHHHHCCEEEESSTTSSCHHHHHHHCTTCCEEEEECSCGGGG
T ss_pred ccchhhCCHHHHHHHHh-hcCCchhHHHHHHHHHHHHHhhhhhceEEeeccccccCHHHHHhhCCCceEEeccCCCchhh
Confidence 36799999999999999 997789999999999999999555444433322 223456778889999999988764432
Q ss_pred h-------------HHHhhhcccccCCccEEecCCCCcccHHHHHHhhhcCCCCcEEEccCCCccCHHHHHHHH-cCCCC
Q 012207 87 D-------------ALSIVSSSSWKLTLRSINLSRSRLFTKVGLSSLTVNCRFLTEIDLSNGTEMGDAAAAAIA-EAKNL 152 (468)
Q Consensus 87 ~-------------~~~~l~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~l~-~~~~L 152 (468)
. ++..+ ...+++|++|+++++. ++...+..+...+++|++|++.+|..+++..+..+. .+++|
T Consensus 82 ~~l~~~~~~~~~~~~l~~l--~~~~~~L~~L~L~~~~-~~~~~~~~l~~~~~~L~~L~L~~~~~~~~~~l~~~~~~~~~L 158 (594)
T 2p1m_B 82 FNLVPDGWGGYVYPWIEAM--SSSYTWLEEIRLKRMV-VTDDCLELIAKSFKNFKVLVLSSCEGFSTDGLAAIAATCRNL 158 (594)
T ss_dssp GTCSCTTSCCBCHHHHHHH--HHHCTTCCEEEEESCB-CCHHHHHHHHHHCTTCCEEEEESCEEEEHHHHHHHHHHCTTC
T ss_pred cccccccccchhhHHHHHH--HHhCCCCCeEEeeCcE-EcHHHHHHHHHhCCCCcEEeCCCcCCCCHHHHHHHHHhCCCC
Confidence 2 12222 3456788888888864 677777777767888888888888666665555554 68888
Q ss_pred CeEeccCCcccChH---hHHHHHhcCCCCcEEeccCCC-CCChHHHHHHHhhCCCccEeeeccc-CCCCCCccccccCCC
Q 012207 153 ERLWLARCKLITDL---GIGRIAACCRKLKLLCLKWCI-RVTDLGVELVALKCQEIRTLDLSYL-PITEKCLPPVVKLQY 227 (468)
Q Consensus 153 ~~L~l~~~~~~~~~---~~~~~~~~~~~L~~L~l~~~~-~~~~~~~~~~~~~~~~L~~L~l~~~-~~~~~~~~~l~~~~~ 227 (468)
++|++.+|. +++. .+..+...+++|++|+++++. .++...+..+...+++|++|++++| .+.+ ....+..+++
T Consensus 159 ~~L~L~~~~-i~~~~~~~l~~~~~~~~~L~~L~l~~~~~~~~~~~l~~l~~~~~~L~~L~L~~~~~~~~-l~~~~~~~~~ 236 (594)
T 2p1m_B 159 KELDLRESD-VDDVSGHWLSHFPDTYTSLVSLNISCLASEVSFSALERLVTRCPNLKSLKLNRAVPLEK-LATLLQRAPQ 236 (594)
T ss_dssp CEEECTTCE-EECCCGGGGGGSCTTCCCCCEEECTTCCSCCCHHHHHHHHHHCTTCCEEECCTTSCHHH-HHHHHHHCTT
T ss_pred CEEeCcCCc-cCCcchHHHHHHhhcCCcCcEEEecccCCcCCHHHHHHHHHhCCCCcEEecCCCCcHHH-HHHHHhcCCc
Confidence 888888765 3322 233333346677777777664 3555556666666777777777765 1111 1111223344
Q ss_pred CCeeeecCCC----------------------------CCChHHHHHHHhcCCCCCEEEccCCcccChhhHHHHHhcCCc
Q 012207 228 LEDLVLEGCH----------------------------GIDDDGLASVEYSCKSLKALNLSKCQNISHVGLSSLIKGADY 279 (468)
Q Consensus 228 L~~L~l~~~~----------------------------~~~~~~~~~l~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~ 279 (468)
|++|.+..+. ......+..+...+++|++|+++++. +.+..+..+...+++
T Consensus 237 L~~L~l~~~~~~~~~~~~~~l~~~l~~~~~L~~Ls~~~~~~~~~l~~~~~~~~~L~~L~L~~~~-l~~~~l~~~~~~~~~ 315 (594)
T 2p1m_B 237 LEELGTGGYTAEVRPDVYSGLSVALSGCKELRCLSGFWDAVPAYLPAVYSVCSRLTTLNLSYAT-VQSYDLVKLLCQCPK 315 (594)
T ss_dssp CSEEECSBCCCCCCHHHHHHHHHHHHTCTTCCEEECCBTCCGGGGGGGHHHHTTCCEEECTTCC-CCHHHHHHHHTTCTT
T ss_pred ceEcccccccCccchhhHHHHHHHHhcCCCcccccCCcccchhhHHHHHHhhCCCCEEEccCCC-CCHHHHHHHHhcCCC
Confidence 4444332211 01111111111124445555555444 444444444444555
Q ss_pred cceEeecCCCCCchhHHHH-hhcCCCCCeeEec---------CCcCChhHHHHHHHhCCCCCeEecccCCCCCHHHHHHH
Q 012207 280 LQQLILAYSFWVSADLSKC-LHNFPMLQSIKFE---------DCPVARSGIKAIGNWHGSLKELSLSKCSGVTDEELSFV 349 (468)
Q Consensus 280 L~~L~l~~~~~~~~~~~~~-l~~~~~L~~L~l~---------~~~~~~~~~~~l~~~~~~L~~L~l~~~~~~~~~~l~~~ 349 (468)
|++|++.++ ..+..... ...+++|++|++. .+.+++.++..+...+++|++|.+. |+.+++.++..+
T Consensus 316 L~~L~l~~~--~~~~~l~~l~~~~~~L~~L~L~~~~~~g~~~~~~l~~~~l~~l~~~~~~L~~L~~~-~~~l~~~~~~~l 392 (594)
T 2p1m_B 316 LQRLWVLDY--IEDAGLEVLASTCKDLRELRVFPSEPFVMEPNVALTEQGLVSVSMGCPKLESVLYF-CRQMTNAALITI 392 (594)
T ss_dssp CCEEEEEGG--GHHHHHHHHHHHCTTCCEEEEECSCTTCSSCSSCCCHHHHHHHHHHCTTCCEEEEE-ESCCCHHHHHHH
T ss_pred cCEEeCcCc--cCHHHHHHHHHhCCCCCEEEEecCcccccccCCCCCHHHHHHHHHhchhHHHHHHh-cCCcCHHHHHHH
Confidence 555555444 22221221 2234455555442 1234444444444344555555332 234444444444
Q ss_pred HHhCCCCCeEecC-----CCCCCC----HHHHHHHHhcCCcCCeEEccCCCCCCHHHHHHHHhcCCCCCEEEccCCCCCh
Q 012207 350 VQSHKELRKLDIT-----CCRKIT----YASINSITKTCTSLTSLRMECCKLVSWEAFVLIGQQCQYLEELDITENEVND 420 (468)
Q Consensus 350 ~~~~~~L~~L~l~-----~~~~~~----~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~ 420 (468)
...+++|+.|+++ +|..++ +.++..++..+++|+.|++++ .+++.++..+...+++|+.|++++|.+++
T Consensus 393 ~~~~~~L~~L~L~~~~~~~~~~l~~~~~~~~~~~l~~~~~~L~~L~L~~--~l~~~~~~~l~~~~~~L~~L~L~~~~i~~ 470 (594)
T 2p1m_B 393 ARNRPNMTRFRLCIIEPKAPDYLTLEPLDIGFGAIVEHCKDLRRLSLSG--LLTDKVFEYIGTYAKKMEMLSVAFAGDSD 470 (594)
T ss_dssp HHHCTTCCEEEEEESSTTCCCTTTCCCTHHHHHHHHHHCTTCCEEECCS--SCCHHHHHHHHHHCTTCCEEEEESCCSSH
T ss_pred HhhCCCcceeEeecccCCCcccccCCchhhHHHHHHhhCCCccEEeecC--cccHHHHHHHHHhchhccEeeccCCCCcH
Confidence 4444555555554 333444 444444444455555555533 34444444444334555555555555544
Q ss_pred hhHHhc-ccCCCCCEEeeCCCCccCHHHHHHHHhcCcccCeeecCCCC
Q 012207 421 EGLKSI-SRCSKLSSLKLGICSNITDEGLKHVGSTCSMLKELDLYRFS 467 (468)
Q Consensus 421 ~~~~~l-~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~~L~~L~l~~c~ 467 (468)
.++..+ ..+++|+.|++++| .+++.++..+...+++|+.|++++|+
T Consensus 471 ~~~~~l~~~~~~L~~L~L~~n-~~~~~~~~~~~~~l~~L~~L~l~~~~ 517 (594)
T 2p1m_B 471 LGMHHVLSGCDSLRKLEIRDC-PFGDKALLANASKLETMRSLWMSSCS 517 (594)
T ss_dssp HHHHHHHHHCTTCCEEEEESC-SCCHHHHHHTGGGGGGSSEEEEESSC
T ss_pred HHHHHHHhcCCCcCEEECcCC-CCcHHHHHHHHHhCCCCCEEeeeCCC
Confidence 444444 23455555555555 34444444444444555555555543
|
| >3ogk_B Coronatine-insensitive protein 1; leucine rich repeat, ubiquitin ligase, SCF, protein binding; HET: OGK; 2.80A {Arabidopsis thaliana} PDB: 3ogl_B* 3ogm_B* | Back alignment and structure |
|---|
Probab=100.00 E-value=7.5e-43 Score=342.08 Aligned_cols=456 Identities=18% Similarity=0.240 Sum_probs=304.2
Q ss_pred Ccccccc-CCCCcccCcHHHHHHHHhhhcCChhhhhHHhhhhhhHHHHHHhhhhhccccc--cchHHHHhccCCCCcEEe
Q 012207 1 MEAKRKK-NSNPFDFLSEEIIFNILDHLNNDPFARKSFSLTCRNFYSIESRHRKILKPLC--AETLSRTSARYPFITQLD 77 (468)
Q Consensus 1 m~~~~~~-~~~~~~~LP~eil~~I~~~~l~~~~~~~~~~~v~~~w~~~~~~~~~~~~~~~--~~~~~~~~~~~~~l~~l~ 77 (468)
||....+ .......||+||+.+||+ |+++.+|+.++++|||+|+.+....++.+.... ...+...+.+++++++|+
T Consensus 1 m~~~~~~r~~~~~~~LPdeil~~I~~-~L~~~~d~~~~s~vck~W~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~L~~L~ 79 (592)
T 3ogk_B 1 MEDPDIKRCKLSCVATVDDVIEQVMT-YITDPKDRDSASLVCRRWFKIDSETREHVTMALCYTATPDRLSRRFPNLRSLK 79 (592)
T ss_dssp -----------CCCCCGGGTHHHHHT-TCCCHHHHHHHTTSCHHHHHHHHHHCCEEEESCGGGSCHHHHHHHCTTCSEEE
T ss_pred CCChhhhhHhhccCCCCHHHHHHHHH-hcCCHHHHHHHHHHhHHHHHhhhccccEEEEeeccccChHHHHHhCCCCeEEE
Confidence 5554322 223445799999999999 994499999999999999999766555444332 234567788899999999
Q ss_pred cCCCCCCCh-------------hHHHhhhcccccCCccEEecCCCCcccHHHHHHhhhcCCC-CcEEEccCCCccCHHHH
Q 012207 78 LSLCPRAND-------------DALSIVSSSSWKLTLRSINLSRSRLFTKVGLSSLTVNCRF-LTEIDLSNGTEMGDAAA 143 (468)
Q Consensus 78 l~~~~~~~~-------------~~~~~l~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~-L~~L~l~~~~~~~~~~~ 143 (468)
+++++.+.+ .++..+ ...+++|++|+++++ .++...+..+...+++ |++|++++|..+.+..+
T Consensus 80 L~~~~~~~~~~~~~~~~~~~~~~~l~~l--~~~~~~L~~L~L~~~-~i~~~~~~~l~~~~~~~L~~L~L~~~~~~~~~~l 156 (592)
T 3ogk_B 80 LKGKPRAAMFNLIPENWGGYVTPWVTEI--SNNLRQLKSVHFRRM-IVSDLDLDRLAKARADDLETLKLDKCSGFTTDGL 156 (592)
T ss_dssp EECSCGGGGGTCSCTTSCCBCHHHHHHH--HHHCTTCCEEEEESC-BCCHHHHHHHHHHHGGGCCEEEEESCEEEEHHHH
T ss_pred ecCCcchhhcccccccccccchHHHHHH--HhhCCCCCeEEeecc-EecHHHHHHHHHhccccCcEEECcCCCCcCHHHH
Confidence 987654332 123322 336788999999887 4677666666655666 99999988865666555
Q ss_pred HHHH-cCCCCCeEeccCCcccChHh---HHHHHhcCCCCcEEeccCCCC--CChHHHHHHHhhCCCccEeeecccCCCCC
Q 012207 144 AAIA-EAKNLERLWLARCKLITDLG---IGRIAACCRKLKLLCLKWCIR--VTDLGVELVALKCQEIRTLDLSYLPITEK 217 (468)
Q Consensus 144 ~~l~-~~~~L~~L~l~~~~~~~~~~---~~~~~~~~~~L~~L~l~~~~~--~~~~~~~~~~~~~~~L~~L~l~~~~~~~~ 217 (468)
..+. .+++|++|++.+|. +.+.+ +..+...+++|++|+++++.. +....+..+...+++|++|+++++.+..
T Consensus 157 ~~~~~~~~~L~~L~L~~~~-~~~~~~~~l~~~~~~~~~L~~L~L~~n~~~~~~~~~l~~~~~~~~~L~~L~L~~~~~~~- 234 (592)
T 3ogk_B 157 LSIVTHCRKIKTLLMEESS-FSEKDGKWLHELAQHNTSLEVLNFYMTEFAKISPKDLETIARNCRSLVSVKVGDFEILE- 234 (592)
T ss_dssp HHHHHHCTTCSEEECTTCE-EECCCSHHHHHHHHHCCCCCEEECTTCCCSSCCHHHHHHHHHHCTTCCEEECSSCBGGG-
T ss_pred HHHHhhCCCCCEEECcccc-ccCcchhHHHHHHhcCCCccEEEeeccCCCccCHHHHHHHHhhCCCCcEEeccCccHHH-
Confidence 5444 68899999998874 33222 555666688888888876532 2455666677788888888888775432
Q ss_pred CccccccCCCCCeeeecCCCC------------------------CChHHHHHHHhcCCCCCEEEccCCcccChhhHHHH
Q 012207 218 CLPPVVKLQYLEDLVLEGCHG------------------------IDDDGLASVEYSCKSLKALNLSKCQNISHVGLSSL 273 (468)
Q Consensus 218 ~~~~l~~~~~L~~L~l~~~~~------------------------~~~~~~~~l~~~~~~L~~L~l~~~~~~~~~~~~~~ 273 (468)
....+..+++|++|.++.... .....+..+...+++|++|+++++. +.+..+..+
T Consensus 235 l~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~l~~~~~~~~~L~~L~Ls~~~-l~~~~~~~~ 313 (592)
T 3ogk_B 235 LVGFFKAAANLEEFCGGSLNEDIGMPEKYMNLVFPRKLCRLGLSYMGPNEMPILFPFAAQIRKLDLLYAL-LETEDHCTL 313 (592)
T ss_dssp GHHHHHHCTTCCEEEECBCCCCTTCTTSSSCCCCCTTCCEEEETTCCTTTGGGGGGGGGGCCEEEETTCC-CCHHHHHHH
T ss_pred HHHHHhhhhHHHhhcccccccccchHHHHHHhhccccccccCccccchhHHHHHHhhcCCCcEEecCCCc-CCHHHHHHH
Confidence 222233444555554432110 1111222233346778888888776 666666666
Q ss_pred HhcCCccceEeecCCCCCchh-HHHHhhcCCCCCeeEecC-----------CcCChhHHHHHHHhCCCCCeEecccCCCC
Q 012207 274 IKGADYLQQLILAYSFWVSAD-LSKCLHNFPMLQSIKFED-----------CPVARSGIKAIGNWHGSLKELSLSKCSGV 341 (468)
Q Consensus 274 ~~~~~~L~~L~l~~~~~~~~~-~~~~l~~~~~L~~L~l~~-----------~~~~~~~~~~l~~~~~~L~~L~l~~~~~~ 341 (468)
+..+++|++|++..+ +.+. .......+++|++|++.+ +.+++.++..+...+++|++|+++ |+.+
T Consensus 314 ~~~~~~L~~L~L~~~--~~~~~l~~~~~~~~~L~~L~L~~g~~~~~~~~~~~~~~~~~~~~l~~~~~~L~~L~l~-~~~l 390 (592)
T 3ogk_B 314 IQKCPNLEVLETRNV--IGDRGLEVLAQYCKQLKRLRIERGADEQGMEDEEGLVSQRGLIALAQGCQELEYMAVY-VSDI 390 (592)
T ss_dssp HTTCTTCCEEEEEGG--GHHHHHHHHHHHCTTCCEEEEECCCCSSTTSSTTCCCCHHHHHHHHHHCTTCSEEEEE-ESCC
T ss_pred HHhCcCCCEEeccCc--cCHHHHHHHHHhCCCCCEEEeecCccccccccccCccCHHHHHHHHhhCccCeEEEee-cCCc
Confidence 777788888887732 3333 333345677888888883 457777777776677888888884 4677
Q ss_pred CHHHHHHHHHhCCCCCeEecC---CCCCCCH----HHHHHHHhcCCcCCeEEccCCC-CCCHHHHHHHHhcCCCCCEEEc
Q 012207 342 TDEELSFVVQSHKELRKLDIT---CCRKITY----ASINSITKTCTSLTSLRMECCK-LVSWEAFVLIGQQCQYLEELDI 413 (468)
Q Consensus 342 ~~~~l~~~~~~~~~L~~L~l~---~~~~~~~----~~~~~~~~~~~~L~~L~l~~~~-~~~~~~~~~~~~~~~~L~~L~l 413 (468)
++.++..+...+++|++|+++ .|..+++ .++..+...+++|++|+++.|. .+++.++..+...+++|+.|++
T Consensus 391 ~~~~~~~l~~~~~~L~~L~l~~~~~~n~l~~~p~~~~~~~~~~~~~~L~~L~L~~~~~~l~~~~~~~~~~~~~~L~~L~L 470 (592)
T 3ogk_B 391 TNESLESIGTYLKNLCDFRLVLLDREERITDLPLDNGVRSLLIGCKKLRRFAFYLRQGGLTDLGLSYIGQYSPNVRWMLL 470 (592)
T ss_dssp CHHHHHHHHHHCCSCCEEEEEECSCCSCCSSCCCHHHHHHHHHHCTTCCEEEEECCGGGCCHHHHHHHHHSCTTCCEEEE
T ss_pred cHHHHHHHHhhCCCCcEEEEeecCCCccccCchHHHHHHHHHHhCCCCCEEEEecCCCCccHHHHHHHHHhCccceEeec
Confidence 777777776667888888886 2444554 3566666678888888887655 3677777777767888888888
Q ss_pred cCCCCChhhHHhc-ccCCCCCEEeeCCCCccCHHHHHHHHhcCcccCeeecCCCC
Q 012207 414 TENEVNDEGLKSI-SRCSKLSSLKLGICSNITDEGLKHVGSTCSMLKELDLYRFS 467 (468)
Q Consensus 414 ~~~~~~~~~~~~l-~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~~L~~L~l~~c~ 467 (468)
++|.+++.++..+ ..+++|+.|++++| .+++.++..+...+++|+.|++++|+
T Consensus 471 ~~n~l~~~~~~~~~~~~~~L~~L~l~~n-~l~~~~~~~~~~~l~~L~~L~ls~n~ 524 (592)
T 3ogk_B 471 GYVGESDEGLMEFSRGCPNLQKLEMRGC-CFSERAIAAAVTKLPSLRYLWVQGYR 524 (592)
T ss_dssp CSCCSSHHHHHHHHTCCTTCCEEEEESC-CCBHHHHHHHHHHCSSCCEEEEESCB
T ss_pred cCCCCCHHHHHHHHhcCcccCeeeccCC-CCcHHHHHHHHHhcCccCeeECcCCc
Confidence 8888877665554 46788888888888 57777777777778888888888775
|
| >2p1m_B Transport inhibitor response 1 protein; F-BOX, leucine rich repeat, signaling protein; HET: IHP; 1.80A {Arabidopsis thaliana} PDB: 2p1n_B* 2p1o_B* 2p1p_B* 2p1q_B* 3c6n_B* 3c6o_B* 3c6p_B* | Back alignment and structure |
|---|
Probab=100.00 E-value=3.7e-33 Score=273.59 Aligned_cols=391 Identities=18% Similarity=0.257 Sum_probs=311.5
Q ss_pred HHHHhccCCCCcEEecCCCCCCChhHHHhhhcccccCCccEEecCCCCcccHHHHHHhhhcCCCCcEEEccCCCccCHHH
Q 012207 63 LSRTSARYPFITQLDLSLCPRANDDALSIVSSSSWKLTLRSINLSRSRLFTKVGLSSLTVNCRFLTEIDLSNGTEMGDAA 142 (468)
Q Consensus 63 ~~~~~~~~~~l~~l~l~~~~~~~~~~~~~l~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~ 142 (468)
+..+...+++|++|+++++. +.+..+..+ ...+++|++|++.+|..++...+..+...+++|++|++++|. +++..
T Consensus 97 l~~l~~~~~~L~~L~L~~~~-~~~~~~~~l--~~~~~~L~~L~L~~~~~~~~~~l~~~~~~~~~L~~L~L~~~~-i~~~~ 172 (594)
T 2p1m_B 97 IEAMSSSYTWLEEIRLKRMV-VTDDCLELI--AKSFKNFKVLVLSSCEGFSTDGLAAIAATCRNLKELDLRESD-VDDVS 172 (594)
T ss_dssp HHHHHHHCTTCCEEEEESCB-CCHHHHHHH--HHHCTTCCEEEEESCEEEEHHHHHHHHHHCTTCCEEECTTCE-EECCC
T ss_pred HHHHHHhCCCCCeEEeeCcE-EcHHHHHHH--HHhCCCCcEEeCCCcCCCCHHHHHHHHHhCCCCCEEeCcCCc-cCCcc
Confidence 34556788999999999875 677766665 234789999999998778888888888889999999999884 44332
Q ss_pred HHHHH----cCCCCCeEeccCCc-ccChHhHHHHHhcCCCCcEEeccCCCCCChHHHHHHHhhCCCccEeeecccC----
Q 012207 143 AAAIA----EAKNLERLWLARCK-LITDLGIGRIAACCRKLKLLCLKWCIRVTDLGVELVALKCQEIRTLDLSYLP---- 213 (468)
Q Consensus 143 ~~~l~----~~~~L~~L~l~~~~-~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~---- 213 (468)
...+. .+++|++|++.++. .++...+..+...+++|++|++.+|..++. +......+++|++|.+..+.
T Consensus 173 ~~~l~~~~~~~~~L~~L~l~~~~~~~~~~~l~~l~~~~~~L~~L~L~~~~~~~~--l~~~~~~~~~L~~L~l~~~~~~~~ 250 (594)
T 2p1m_B 173 GHWLSHFPDTYTSLVSLNISCLASEVSFSALERLVTRCPNLKSLKLNRAVPLEK--LATLLQRAPQLEELGTGGYTAEVR 250 (594)
T ss_dssp GGGGGGSCTTCCCCCEEECTTCCSCCCHHHHHHHHHHCTTCCEEECCTTSCHHH--HHHHHHHCTTCSEEECSBCCCCCC
T ss_pred hHHHHHHhhcCCcCcEEEecccCCcCCHHHHHHHHHhCCCCcEEecCCCCcHHH--HHHHHhcCCcceEcccccccCccc
Confidence 23333 46799999999875 466677777777799999999998744333 56666688888888765431
Q ss_pred ----------------------C---CCCCcccc-ccCCCCCeeeecCCCCCChHHHHHHHhcCCCCCEEEccCCcccCh
Q 012207 214 ----------------------I---TEKCLPPV-VKLQYLEDLVLEGCHGIDDDGLASVEYSCKSLKALNLSKCQNISH 267 (468)
Q Consensus 214 ----------------------~---~~~~~~~l-~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~~L~~L~l~~~~~~~~ 267 (468)
+ ....+..+ ..+++|++|++++|. +.+..+..+...+++|++|++.++ +.+
T Consensus 251 ~~~~~~l~~~l~~~~~L~~Ls~~~~~~~~~l~~~~~~~~~L~~L~L~~~~-l~~~~l~~~~~~~~~L~~L~l~~~--~~~ 327 (594)
T 2p1m_B 251 PDVYSGLSVALSGCKELRCLSGFWDAVPAYLPAVYSVCSRLTTLNLSYAT-VQSYDLVKLLCQCPKLQRLWVLDY--IED 327 (594)
T ss_dssp HHHHHHHHHHHHTCTTCCEEECCBTCCGGGGGGGHHHHTTCCEEECTTCC-CCHHHHHHHHTTCTTCCEEEEEGG--GHH
T ss_pred hhhHHHHHHHHhcCCCcccccCCcccchhhHHHHHHhhCCCCEEEccCCC-CCHHHHHHHHhcCCCcCEEeCcCc--cCH
Confidence 1 11112222 257999999999976 887777776667999999999987 556
Q ss_pred hhHHHHHhcCCccceEeec--------CCCCCchhHHHHhh-cCCCCCeeEecCCcCChhHHHHHHHhCCCCCeEecc--
Q 012207 268 VGLSSLIKGADYLQQLILA--------YSFWVSADLSKCLH-NFPMLQSIKFEDCPVARSGIKAIGNWHGSLKELSLS-- 336 (468)
Q Consensus 268 ~~~~~~~~~~~~L~~L~l~--------~~~~~~~~~~~~l~-~~~~L~~L~l~~~~~~~~~~~~l~~~~~~L~~L~l~-- 336 (468)
.++..+...+++|++|++. .+..+++.....+. .+++|++|.+..+.+++..+..+...+++|++|+++
T Consensus 328 ~~l~~l~~~~~~L~~L~L~~~~~~g~~~~~~l~~~~l~~l~~~~~~L~~L~~~~~~l~~~~~~~l~~~~~~L~~L~L~~~ 407 (594)
T 2p1m_B 328 AGLEVLASTCKDLRELRVFPSEPFVMEPNVALTEQGLVSVSMGCPKLESVLYFCRQMTNAALITIARNRPNMTRFRLCII 407 (594)
T ss_dssp HHHHHHHHHCTTCCEEEEECSCTTCSSCSSCCCHHHHHHHHHHCTTCCEEEEEESCCCHHHHHHHHHHCTTCCEEEEEES
T ss_pred HHHHHHHHhCCCCCEEEEecCcccccccCCCCCHHHHHHHHHhchhHHHHHHhcCCcCHHHHHHHHhhCCCcceeEeecc
Confidence 7777788889999999993 34456665555554 599999999988899999999998789999999999
Q ss_pred ---cCCCCC----HHHHHHHHHhCCCCCeEecCCCCCCCHHHHHHHHhcCCcCCeEEccCCCCCCHHHHHHHHhcCCCCC
Q 012207 337 ---KCSGVT----DEELSFVVQSHKELRKLDITCCRKITYASINSITKTCTSLTSLRMECCKLVSWEAFVLIGQQCQYLE 409 (468)
Q Consensus 337 ---~~~~~~----~~~l~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~ 409 (468)
+|..++ +.++..++..+++|+.|++++ .+++.++..+...+++|+.|++++|. +++.++..+...+++|+
T Consensus 408 ~~~~~~~l~~~~~~~~~~~l~~~~~~L~~L~L~~--~l~~~~~~~l~~~~~~L~~L~L~~~~-i~~~~~~~l~~~~~~L~ 484 (594)
T 2p1m_B 408 EPKAPDYLTLEPLDIGFGAIVEHCKDLRRLSLSG--LLTDKVFEYIGTYAKKMEMLSVAFAG-DSDLGMHHVLSGCDSLR 484 (594)
T ss_dssp STTCCCTTTCCCTHHHHHHHHHHCTTCCEEECCS--SCCHHHHHHHHHHCTTCCEEEEESCC-SSHHHHHHHHHHCTTCC
T ss_pred cCCCcccccCCchhhHHHHHHhhCCCccEEeecC--cccHHHHHHHHHhchhccEeeccCCC-CcHHHHHHHHhcCCCcC
Confidence 677888 788888899999999999976 68999988888779999999999976 88999988877899999
Q ss_pred EEEccCCCCChhhHHhcc-cCCCCCEEeeCCCCccCHHHHHHHHhcCcccCeeecCCC
Q 012207 410 ELDITENEVNDEGLKSIS-RCSKLSSLKLGICSNITDEGLKHVGSTCSMLKELDLYRF 466 (468)
Q Consensus 410 ~L~l~~~~~~~~~~~~l~-~~~~L~~L~l~~~~~l~~~~~~~~~~~~~~L~~L~l~~c 466 (468)
+|++++|.+++.++..+. .+++|+.|++++| .++..++..+...+|+|+...+..+
T Consensus 485 ~L~L~~n~~~~~~~~~~~~~l~~L~~L~l~~~-~~~~~~~~~l~~~lp~l~i~~~~~~ 541 (594)
T 2p1m_B 485 KLEIRDCPFGDKALLANASKLETMRSLWMSSC-SVSFGACKLLGQKMPKLNVEVIDER 541 (594)
T ss_dssp EEEEESCSCCHHHHHHTGGGGGGSSEEEEESS-CCBHHHHHHHHHHCTTEEEEEECSS
T ss_pred EEECcCCCCcHHHHHHHHHhCCCCCEEeeeCC-CCCHHHHHHHHHhCCCCEEEEecCC
Confidence 999999999888877655 5899999999999 7799899998888999976665543
|
| >3ogk_B Coronatine-insensitive protein 1; leucine rich repeat, ubiquitin ligase, SCF, protein binding; HET: OGK; 2.80A {Arabidopsis thaliana} PDB: 3ogl_B* 3ogm_B* | Back alignment and structure |
|---|
Probab=100.00 E-value=6.6e-32 Score=264.48 Aligned_cols=392 Identities=14% Similarity=0.157 Sum_probs=310.6
Q ss_pred HHHHhccCCCCcEEecCCCCCCChhHHHhhhcccccCCccEEecCCCCcccHHHHHHhhhcCCCCcEEEccCCCccCHH-
Q 012207 63 LSRTSARYPFITQLDLSLCPRANDDALSIVSSSSWKLTLRSINLSRSRLFTKVGLSSLTVNCRFLTEIDLSNGTEMGDA- 141 (468)
Q Consensus 63 ~~~~~~~~~~l~~l~l~~~~~~~~~~~~~l~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~- 141 (468)
+......+++|++|+++++ .+.+..+..+ ......+|++|+++++..+....+..+...+++|++|++++|. +.+.
T Consensus 104 l~~l~~~~~~L~~L~L~~~-~i~~~~~~~l-~~~~~~~L~~L~L~~~~~~~~~~l~~~~~~~~~L~~L~L~~~~-~~~~~ 180 (592)
T 3ogk_B 104 VTEISNNLRQLKSVHFRRM-IVSDLDLDRL-AKARADDLETLKLDKCSGFTTDGLLSIVTHCRKIKTLLMEESS-FSEKD 180 (592)
T ss_dssp HHHHHHHCTTCCEEEEESC-BCCHHHHHHH-HHHHGGGCCEEEEESCEEEEHHHHHHHHHHCTTCSEEECTTCE-EECCC
T ss_pred HHHHHhhCCCCCeEEeecc-EecHHHHHHH-HHhccccCcEEECcCCCCcCHHHHHHHHhhCCCCCEEECcccc-ccCcc
Confidence 4556668999999999988 4777766665 2222234999999998878888888888899999999999984 3322
Q ss_pred ---HHHHHHcCCCCCeEeccCCcc--cChHhHHHHHhcCCCCcEEeccCCCCCChHHHHHHHhhCCCccEeeecccCCC-
Q 012207 142 ---AAAAIAEAKNLERLWLARCKL--ITDLGIGRIAACCRKLKLLCLKWCIRVTDLGVELVALKCQEIRTLDLSYLPIT- 215 (468)
Q Consensus 142 ---~~~~l~~~~~L~~L~l~~~~~--~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~- 215 (468)
.......+++|++|++.++.. +....+..+...+++|++|++.+|. +.. +......+++|++|+++.....
T Consensus 181 ~~~l~~~~~~~~~L~~L~L~~n~~~~~~~~~l~~~~~~~~~L~~L~L~~~~-~~~--l~~~~~~~~~L~~L~l~~~~~~~ 257 (592)
T 3ogk_B 181 GKWLHELAQHNTSLEVLNFYMTEFAKISPKDLETIARNCRSLVSVKVGDFE-ILE--LVGFFKAAANLEEFCGGSLNEDI 257 (592)
T ss_dssp SHHHHHHHHHCCCCCEEECTTCCCSSCCHHHHHHHHHHCTTCCEEECSSCB-GGG--GHHHHHHCTTCCEEEECBCCCCT
T ss_pred hhHHHHHHhcCCCccEEEeeccCCCccCHHHHHHHHhhCCCCcEEeccCcc-HHH--HHHHHhhhhHHHhhccccccccc
Confidence 223456799999999987653 2456777777789999999999974 333 3345568899999998743111
Q ss_pred ------------------------CCCcc-ccccCCCCCeeeecCCCCCChHHHHHHHhcCCCCCEEEccCCcccChhhH
Q 012207 216 ------------------------EKCLP-PVVKLQYLEDLVLEGCHGIDDDGLASVEYSCKSLKALNLSKCQNISHVGL 270 (468)
Q Consensus 216 ------------------------~~~~~-~l~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~~L~~L~l~~~~~~~~~~~ 270 (468)
...+. .+..+++|++|++++|. +.+..+..+...+++|++|++. ..+.+.++
T Consensus 258 ~~~~~~~~l~~~~~L~~L~l~~~~~~~l~~~~~~~~~L~~L~Ls~~~-l~~~~~~~~~~~~~~L~~L~L~--~~~~~~~l 334 (592)
T 3ogk_B 258 GMPEKYMNLVFPRKLCRLGLSYMGPNEMPILFPFAAQIRKLDLLYAL-LETEDHCTLIQKCPNLEVLETR--NVIGDRGL 334 (592)
T ss_dssp TCTTSSSCCCCCTTCCEEEETTCCTTTGGGGGGGGGGCCEEEETTCC-CCHHHHHHHHTTCTTCCEEEEE--GGGHHHHH
T ss_pred chHHHHHHhhccccccccCccccchhHHHHHHhhcCCCcEEecCCCc-CCHHHHHHHHHhCcCCCEEecc--CccCHHHH
Confidence 11122 23468899999999976 7777776666669999999999 34667778
Q ss_pred HHHHhcCCccceEeecC----------CCCCchhHHHH-hhcCCCCCeeEecCCcCChhHHHHHHHhCCCCCeEeccc--
Q 012207 271 SSLIKGADYLQQLILAY----------SFWVSADLSKC-LHNFPMLQSIKFEDCPVARSGIKAIGNWHGSLKELSLSK-- 337 (468)
Q Consensus 271 ~~~~~~~~~L~~L~l~~----------~~~~~~~~~~~-l~~~~~L~~L~l~~~~~~~~~~~~l~~~~~~L~~L~l~~-- 337 (468)
..+...+++|++|+++. |..+.+..... ...+++|++|.+..+.+++..+..+...+++|++|++++
T Consensus 335 ~~~~~~~~~L~~L~L~~g~~~~~~~~~~~~~~~~~~~~l~~~~~~L~~L~l~~~~l~~~~~~~l~~~~~~L~~L~l~~~~ 414 (592)
T 3ogk_B 335 EVLAQYCKQLKRLRIERGADEQGMEDEEGLVSQRGLIALAQGCQELEYMAVYVSDITNESLESIGTYLKNLCDFRLVLLD 414 (592)
T ss_dssp HHHHHHCTTCCEEEEECCCCSSTTSSTTCCCCHHHHHHHHHHCTTCSEEEEEESCCCHHHHHHHHHHCCSCCEEEEEECS
T ss_pred HHHHHhCCCCCEEEeecCccccccccccCccCHHHHHHHHhhCccCeEEEeecCCccHHHHHHHHhhCCCCcEEEEeecC
Confidence 88888999999999994 66666654444 557999999999888999999999987799999999973
Q ss_pred -CCCCCH----HHHHHHHHhCCCCCeEecCCCC-CCCHHHHHHHHhcCCcCCeEEccCCCCCCHHHHHHHHhcCCCCCEE
Q 012207 338 -CSGVTD----EELSFVVQSHKELRKLDITCCR-KITYASINSITKTCTSLTSLRMECCKLVSWEAFVLIGQQCQYLEEL 411 (468)
Q Consensus 338 -~~~~~~----~~l~~~~~~~~~L~~L~l~~~~-~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L 411 (468)
|+.+++ .++..++.++++|++|++++|. .+++..+..+...+++|+.|++++|. +++.++..+...+++|++|
T Consensus 415 ~~n~l~~~p~~~~~~~~~~~~~~L~~L~L~~~~~~l~~~~~~~~~~~~~~L~~L~L~~n~-l~~~~~~~~~~~~~~L~~L 493 (592)
T 3ogk_B 415 REERITDLPLDNGVRSLLIGCKKLRRFAFYLRQGGLTDLGLSYIGQYSPNVRWMLLGYVG-ESDEGLMEFSRGCPNLQKL 493 (592)
T ss_dssp CCSCCSSCCCHHHHHHHHHHCTTCCEEEEECCGGGCCHHHHHHHHHSCTTCCEEEECSCC-SSHHHHHHHHTCCTTCCEE
T ss_pred CCccccCchHHHHHHHHHHhCCCCCEEEEecCCCCccHHHHHHHHHhCccceEeeccCCC-CCHHHHHHHHhcCcccCee
Confidence 556765 5788888899999999998765 47888888888889999999999865 8988888888899999999
Q ss_pred EccCCCCChhhHHhcc-cCCCCCEEeeCCCCccCHHHHHHHHhcCcccCeeecCC
Q 012207 412 DITENEVNDEGLKSIS-RCSKLSSLKLGICSNITDEGLKHVGSTCSMLKELDLYR 465 (468)
Q Consensus 412 ~l~~~~~~~~~~~~l~-~~~~L~~L~l~~~~~l~~~~~~~~~~~~~~L~~L~l~~ 465 (468)
++++|.+++.++..+. .+++|+.|++++| ++++.++..+...+|.+....+..
T Consensus 494 ~l~~n~l~~~~~~~~~~~l~~L~~L~ls~n-~it~~~~~~l~~~~p~l~~~~~~~ 547 (592)
T 3ogk_B 494 EMRGCCFSERAIAAAVTKLPSLRYLWVQGY-RASMTGQDLMQMARPYWNIELIPS 547 (592)
T ss_dssp EEESCCCBHHHHHHHHHHCSSCCEEEEESC-BCCTTCTTGGGGCCTTEEEEEECC
T ss_pred eccCCCCcHHHHHHHHHhcCccCeeECcCC-cCCHHHHHHHHHhCCCcEEEEecC
Confidence 9999999888776654 7999999999999 799988888888899887766554
|
| >1z7x_W Ribonuclease inhibitor; leucine-rich repeat, enzyme- inhibitor complex, structural genomics, protein structure initiative, PSI, CESG; HET: CIT; 1.95A {Homo sapiens} SCOP: c.10.1.1 PDB: 2q4g_W* 2bex_A 1a4y_A 2bnh_A 1dfj_I | Back alignment and structure |
|---|
Probab=99.97 E-value=1.7e-29 Score=239.58 Aligned_cols=383 Identities=21% Similarity=0.273 Sum_probs=285.6
Q ss_pred CCCcEEecCCCCCCChhHHHhhhcccccCCccEEecCCCCcccHH---HHHHhhhcCCCCcEEEccCCCccCHHHHHHHH
Q 012207 71 PFITQLDLSLCPRANDDALSIVSSSSWKLTLRSINLSRSRLFTKV---GLSSLTVNCRFLTEIDLSNGTEMGDAAAAAIA 147 (468)
Q Consensus 71 ~~l~~l~l~~~~~~~~~~~~~l~~~~~~~~L~~L~l~~~~~~~~~---~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~l~ 147 (468)
+.+++|+++++. +.+..+..+ ...+++|++|+++++. +... .+......+++|++|+++++ .+++.....+.
T Consensus 3 ~~l~~L~Ls~~~-l~~~~~~~~--~~~~~~L~~L~L~~~~-l~~~~~~~l~~~l~~~~~L~~L~Ls~n-~l~~~~~~~l~ 77 (461)
T 1z7x_W 3 LDIQSLDIQCEE-LSDARWAEL--LPLLQQCQVVRLDDCG-LTEARCKDISSALRVNPALAELNLRSN-ELGDVGVHCVL 77 (461)
T ss_dssp EEEEEEEEESCC-CCHHHHHHH--HHHHTTCSEEEEESSC-CCHHHHHHHHHHHHTCTTCCEEECTTC-CCHHHHHHHHH
T ss_pred ccceehhhhhcc-cCchhHHHH--HhhcCCccEEEccCCC-CCHHHHHHHHHHHHhCCCcCEEeCCCC-cCChHHHHHHH
Confidence 568899998764 666555543 4667899999999876 5544 34455557899999999998 47776666665
Q ss_pred c-CC----CCCeEeccCCcccChHhHHH---HHhcCCCCcEEeccCCCCCChHHHHHHHhh----CCCccEeeecccCCC
Q 012207 148 E-AK----NLERLWLARCKLITDLGIGR---IAACCRKLKLLCLKWCIRVTDLGVELVALK----CQEIRTLDLSYLPIT 215 (468)
Q Consensus 148 ~-~~----~L~~L~l~~~~~~~~~~~~~---~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~----~~~L~~L~l~~~~~~ 215 (468)
. ++ +|++|+++++. +++.++.. ....+++|++|+++++. +++.+...+... .++|++|++++|.++
T Consensus 78 ~~l~~~~~~L~~L~L~~n~-i~~~~~~~l~~~l~~~~~L~~L~Ls~n~-i~~~~~~~l~~~l~~~~~~L~~L~L~~n~l~ 155 (461)
T 1z7x_W 78 QGLQTPSCKIQKLSLQNCC-LTGAGCGVLSSTLRTLPTLQELHLSDNL-LGDAGLQLLCEGLLDPQCRLEKLQLEYCSLS 155 (461)
T ss_dssp HTTCSTTCCCCEEECTTSC-CBGGGHHHHHHHTTSCTTCCEEECCSSB-CHHHHHHHHHHHHTSTTCCCCEEECTTSCCB
T ss_pred HHHhhCCCceeEEEccCCC-CCHHHHHHHHHHHccCCceeEEECCCCc-CchHHHHHHHHHHhcCCCcceEEECCCCCCC
Confidence 4 55 69999999975 66654333 34458999999999974 766666555443 468999999999888
Q ss_pred CCCccc----cccCCCCCeeeecCCCCCChHHHHHHHh----cCCCCCEEEccCCcccChhh---HHHHHhcCCccceEe
Q 012207 216 EKCLPP----VVKLQYLEDLVLEGCHGIDDDGLASVEY----SCKSLKALNLSKCQNISHVG---LSSLIKGADYLQQLI 284 (468)
Q Consensus 216 ~~~~~~----l~~~~~L~~L~l~~~~~~~~~~~~~l~~----~~~~L~~L~l~~~~~~~~~~---~~~~~~~~~~L~~L~ 284 (468)
+..... +..+++|++|+++++ .+.+.....+.. ..++|++|+++++. +...+ +...+..+++|++|+
T Consensus 156 ~~~~~~l~~~l~~~~~L~~L~L~~n-~i~~~~~~~l~~~l~~~~~~L~~L~L~~n~-l~~~~~~~l~~~l~~~~~L~~L~ 233 (461)
T 1z7x_W 156 AASCEPLASVLRAKPDFKELTVSNN-DINEAGVRVLCQGLKDSPCQLEALKLESCG-VTSDNCRDLCGIVASKASLRELA 233 (461)
T ss_dssp GGGHHHHHHHHHHCTTCCEEECCSS-BCHHHHHHHHHHHHHHSCCCCCEEECTTSC-CBTTHHHHHHHHHHHCTTCCEEE
T ss_pred HHHHHHHHHHHhhCCCCCEEECcCC-CcchHHHHHHHHHHhcCCCCceEEEccCCC-CcHHHHHHHHHHHHhCCCccEEe
Confidence 765443 446799999999995 477666655544 35699999999986 44433 455566789999999
Q ss_pred ecCCCCCchhHHHHh-----hcCCCCCeeEecCCcCChhHHHHHHH---hCCCCCeEecccCCCCCHHHHHHHHHh----
Q 012207 285 LAYSFWVSADLSKCL-----HNFPMLQSIKFEDCPVARSGIKAIGN---WHGSLKELSLSKCSGVTDEELSFVVQS---- 352 (468)
Q Consensus 285 l~~~~~~~~~~~~~l-----~~~~~L~~L~l~~~~~~~~~~~~l~~---~~~~L~~L~l~~~~~~~~~~l~~~~~~---- 352 (468)
++++ .+.+.....+ ..+++|++|++++|.+++.+...+.. .+++|++|+++++ .+++.+...+...
T Consensus 234 Ls~n-~l~~~~~~~l~~~~~~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~Ls~n-~i~~~~~~~l~~~l~~~ 311 (461)
T 1z7x_W 234 LGSN-KLGDVGMAELCPGLLHPSSRLRTLWIWECGITAKGCGDLCRVLRAKESLKELSLAGN-ELGDEGARLLCETLLEP 311 (461)
T ss_dssp CCSS-BCHHHHHHHHHHHHTSTTCCCCEEECTTSCCCHHHHHHHHHHHHHCTTCCEEECTTC-CCHHHHHHHHHHHHTST
T ss_pred ccCC-cCChHHHHHHHHHHhcCCCCceEEECcCCCCCHHHHHHHHHHHhhCCCcceEECCCC-CCchHHHHHHHHHhccC
Confidence 9998 4444433222 25899999999999999887554443 5899999999985 6777766555543
Q ss_pred CCCCCeEecCCCCCCCHHH---HHHHHhcCCcCCeEEccCCCCCCHHHHHHHHhc----CCCCCEEEccCCCCChhhHH-
Q 012207 353 HKELRKLDITCCRKITYAS---INSITKTCTSLTSLRMECCKLVSWEAFVLIGQQ----CQYLEELDITENEVNDEGLK- 424 (468)
Q Consensus 353 ~~~L~~L~l~~~~~~~~~~---~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~----~~~L~~L~l~~~~~~~~~~~- 424 (468)
.++|++|++++|. +++.+ +......+++|++|++++| .+++.+...+... .++|++|++++|.+++.+..
T Consensus 312 ~~~L~~L~L~~n~-l~~~~~~~l~~~l~~~~~L~~L~Ls~n-~i~~~~~~~l~~~l~~~~~~L~~L~L~~n~i~~~~~~~ 389 (461)
T 1z7x_W 312 GCQLESLWVKSCS-FTAACCSHFSSVLAQNRFLLELQISNN-RLEDAGVRELCQGLGQPGSVLRVLWLADCDVSDSSCSS 389 (461)
T ss_dssp TCCCCEEECTTSC-CBGGGHHHHHHHHHHCSSCCEEECCSS-BCHHHHHHHHHHHHTSTTCCCCEEECTTSCCCHHHHHH
T ss_pred CccceeeEcCCCC-CchHHHHHHHHHHhhCCCccEEEccCC-ccccccHHHHHHHHcCCCCceEEEECCCCCCChhhHHH
Confidence 2699999999987 65543 3444457899999999996 5888777766542 67999999999999985444
Q ss_pred ---hcccCCCCCEEeeCCCCccCHHHHHHHHhcCc----ccCeeecCCCC
Q 012207 425 ---SISRCSKLSSLKLGICSNITDEGLKHVGSTCS----MLKELDLYRFS 467 (468)
Q Consensus 425 ---~l~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~----~L~~L~l~~c~ 467 (468)
.+..+++|+.|++++| .+++.++..+.+.+| +|+.|.+.++.
T Consensus 390 l~~~l~~~~~L~~L~l~~N-~i~~~~~~~l~~~l~~~~~~L~~L~~~~~~ 438 (461)
T 1z7x_W 390 LAATLLANHSLRELDLSNN-CLGDAGILQLVESVRQPGCLLEQLVLYDIY 438 (461)
T ss_dssp HHHHHHHCCCCCEEECCSS-SCCHHHHHHHHHHHTSTTCCCCEEECTTCC
T ss_pred HHHHHHhCCCccEEECCCC-CCCHHHHHHHHHHhccCCcchhheeecccc
Confidence 4557899999999999 999988887776554 59999888764
|
| >1z7x_W Ribonuclease inhibitor; leucine-rich repeat, enzyme- inhibitor complex, structural genomics, protein structure initiative, PSI, CESG; HET: CIT; 1.95A {Homo sapiens} SCOP: c.10.1.1 PDB: 2q4g_W* 2bex_A 1a4y_A 2bnh_A 1dfj_I | Back alignment and structure |
|---|
Probab=99.97 E-value=9.6e-29 Score=234.47 Aligned_cols=386 Identities=20% Similarity=0.272 Sum_probs=290.0
Q ss_pred HHHHhccCCCCcEEecCCCCCCChhHHHhhh-cccccCCccEEecCCCCcccHHHHHHhhhcCC----CCcEEEccCCCc
Q 012207 63 LSRTSARYPFITQLDLSLCPRANDDALSIVS-SSSWKLTLRSINLSRSRLFTKVGLSSLTVNCR----FLTEIDLSNGTE 137 (468)
Q Consensus 63 ~~~~~~~~~~l~~l~l~~~~~~~~~~~~~l~-~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~----~L~~L~l~~~~~ 137 (468)
+...+..+++++.|+++++. +.+.....++ ....+++|++|+++++. +....+..+...++ +|++|+++++ .
T Consensus 20 ~~~~~~~~~~L~~L~L~~~~-l~~~~~~~l~~~l~~~~~L~~L~Ls~n~-l~~~~~~~l~~~l~~~~~~L~~L~L~~n-~ 96 (461)
T 1z7x_W 20 WAELLPLLQQCQVVRLDDCG-LTEARCKDISSALRVNPALAELNLRSNE-LGDVGVHCVLQGLQTPSCKIQKLSLQNC-C 96 (461)
T ss_dssp HHHHHHHHTTCSEEEEESSC-CCHHHHHHHHHHHHTCTTCCEEECTTCC-CHHHHHHHHHHTTCSTTCCCCEEECTTS-C
T ss_pred HHHHHhhcCCccEEEccCCC-CCHHHHHHHHHHHHhCCCcCEEeCCCCc-CChHHHHHHHHHHhhCCCceeEEEccCC-C
Confidence 55567888999999999885 6665544442 23557899999999865 67777777776666 7999999998 4
Q ss_pred cCHH----HHHHHHcCCCCCeEeccCCcccChHhHHHHHhc----CCCCcEEeccCCCCCChHH---HHHHHhhCCCccE
Q 012207 138 MGDA----AAAAIAEAKNLERLWLARCKLITDLGIGRIAAC----CRKLKLLCLKWCIRVTDLG---VELVALKCQEIRT 206 (468)
Q Consensus 138 ~~~~----~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~----~~~L~~L~l~~~~~~~~~~---~~~~~~~~~~L~~ 206 (468)
+++. ....+..+++|++|+++++. +++.+...+... .++|++|++++| .+++.+ +......+++|++
T Consensus 97 i~~~~~~~l~~~l~~~~~L~~L~Ls~n~-i~~~~~~~l~~~l~~~~~~L~~L~L~~n-~l~~~~~~~l~~~l~~~~~L~~ 174 (461)
T 1z7x_W 97 LTGAGCGVLSSTLRTLPTLQELHLSDNL-LGDAGLQLLCEGLLDPQCRLEKLQLEYC-SLSAASCEPLASVLRAKPDFKE 174 (461)
T ss_dssp CBGGGHHHHHHHTTSCTTCCEEECCSSB-CHHHHHHHHHHHHTSTTCCCCEEECTTS-CCBGGGHHHHHHHHHHCTTCCE
T ss_pred CCHHHHHHHHHHHccCCceeEEECCCCc-CchHHHHHHHHHHhcCCCcceEEECCCC-CCCHHHHHHHHHHHhhCCCCCE
Confidence 6643 34566789999999999975 777666666553 457999999997 455533 3444557899999
Q ss_pred eeecccCCCCCCcccccc-----CCCCCeeeecCCCCCChHHH----HHHHhcCCCCCEEEccCCcccChhhHHHHH---
Q 012207 207 LDLSYLPITEKCLPPVVK-----LQYLEDLVLEGCHGIDDDGL----ASVEYSCKSLKALNLSKCQNISHVGLSSLI--- 274 (468)
Q Consensus 207 L~l~~~~~~~~~~~~l~~-----~~~L~~L~l~~~~~~~~~~~----~~l~~~~~~L~~L~l~~~~~~~~~~~~~~~--- 274 (468)
|+++++.+.+.....+.. .++|++|++++| .+.+.+. ..+. .+++|++|+++++. +.+.++..+.
T Consensus 175 L~L~~n~i~~~~~~~l~~~l~~~~~~L~~L~L~~n-~l~~~~~~~l~~~l~-~~~~L~~L~Ls~n~-l~~~~~~~l~~~~ 251 (461)
T 1z7x_W 175 LTVSNNDINEAGVRVLCQGLKDSPCQLEALKLESC-GVTSDNCRDLCGIVA-SKASLRELALGSNK-LGDVGMAELCPGL 251 (461)
T ss_dssp EECCSSBCHHHHHHHHHHHHHHSCCCCCEEECTTS-CCBTTHHHHHHHHHH-HCTTCCEEECCSSB-CHHHHHHHHHHHH
T ss_pred EECcCCCcchHHHHHHHHHHhcCCCCceEEEccCC-CCcHHHHHHHHHHHH-hCCCccEEeccCCc-CChHHHHHHHHHH
Confidence 999999887665555542 669999999996 5555432 2333 48999999999985 5555544433
Q ss_pred -hcCCccceEeecCCCCCchh----HHHHhhcCCCCCeeEecCCcCChhHHHHHHHh----CCCCCeEecccCCCCCHHH
Q 012207 275 -KGADYLQQLILAYSFWVSAD----LSKCLHNFPMLQSIKFEDCPVARSGIKAIGNW----HGSLKELSLSKCSGVTDEE 345 (468)
Q Consensus 275 -~~~~~L~~L~l~~~~~~~~~----~~~~l~~~~~L~~L~l~~~~~~~~~~~~l~~~----~~~L~~L~l~~~~~~~~~~ 345 (468)
..+++|++|++++| .+... ++..+..+++|++|++++|.+.+.+...+... .++|++|++++| .+++.+
T Consensus 252 ~~~~~~L~~L~L~~n-~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~i~~~~~~~l~~~l~~~~~~L~~L~L~~n-~l~~~~ 329 (461)
T 1z7x_W 252 LHPSSRLRTLWIWEC-GITAKGCGDLCRVLRAKESLKELSLAGNELGDEGARLLCETLLEPGCQLESLWVKSC-SFTAAC 329 (461)
T ss_dssp TSTTCCCCEEECTTS-CCCHHHHHHHHHHHHHCTTCCEEECTTCCCHHHHHHHHHHHHTSTTCCCCEEECTTS-CCBGGG
T ss_pred hcCCCCceEEECcCC-CCCHHHHHHHHHHHhhCCCcceEECCCCCCchHHHHHHHHHhccCCccceeeEcCCC-CCchHH
Confidence 35789999999998 55544 56667789999999999999988887777643 269999999996 466543
Q ss_pred ---HHHHHHhCCCCCeEecCCCCCCCHHHHHHHHhc----CCcCCeEEccCCCCCCHHHHHHHH---hcCCCCCEEEccC
Q 012207 346 ---LSFVVQSHKELRKLDITCCRKITYASINSITKT----CTSLTSLRMECCKLVSWEAFVLIG---QQCQYLEELDITE 415 (468)
Q Consensus 346 ---l~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~----~~~L~~L~l~~~~~~~~~~~~~~~---~~~~~L~~L~l~~ 415 (468)
+...+..+++|++|++++|. +++.+...+... .++|++|++++|. +++.+...+. ..+++|++|++++
T Consensus 330 ~~~l~~~l~~~~~L~~L~Ls~n~-i~~~~~~~l~~~l~~~~~~L~~L~L~~n~-i~~~~~~~l~~~l~~~~~L~~L~l~~ 407 (461)
T 1z7x_W 330 CSHFSSVLAQNRFLLELQISNNR-LEDAGVRELCQGLGQPGSVLRVLWLADCD-VSDSSCSSLAATLLANHSLRELDLSN 407 (461)
T ss_dssp HHHHHHHHHHCSSCCEEECCSSB-CHHHHHHHHHHHHTSTTCCCCEEECTTSC-CCHHHHHHHHHHHHHCCCCCEEECCS
T ss_pred HHHHHHHHhhCCCccEEEccCCc-cccccHHHHHHHHcCCCCceEEEECCCCC-CChhhHHHHHHHHHhCCCccEEECCC
Confidence 55566778999999999985 887776655542 6799999999974 8875544433 3689999999999
Q ss_pred CCCChhhHHhccc-----CCCCCEEeeCCCCccCH---HHHHHHHhcCcccCee
Q 012207 416 NEVNDEGLKSISR-----CSKLSSLKLGICSNITD---EGLKHVGSTCSMLKEL 461 (468)
Q Consensus 416 ~~~~~~~~~~l~~-----~~~L~~L~l~~~~~l~~---~~~~~~~~~~~~L~~L 461 (468)
|.+++.+...+.. .++|+.|.+.++ .... ..+..+.+..|+|+.+
T Consensus 408 N~i~~~~~~~l~~~l~~~~~~L~~L~~~~~-~~~~~~~~~l~~l~~~~p~l~i~ 460 (461)
T 1z7x_W 408 NCLGDAGILQLVESVRQPGCLLEQLVLYDI-YWSEEMEDRLQALEKDKPSLRVI 460 (461)
T ss_dssp SSCCHHHHHHHHHHHTSTTCCCCEEECTTC-CCCHHHHHHHHHHHHHCTTSEEE
T ss_pred CCCCHHHHHHHHHHhccCCcchhheeeccc-ccCHHHHHHHHHHhccCCCcEee
Confidence 9999988777652 347999988887 5543 3455677788998865
|
| >2ast_B S-phase kinase-associated protein 2; SCF-substrate complex, LRR, cell cycle, protein turnover COM ligase-ligase inhibitor complex; HET: TPO; 2.30A {Homo sapiens} SCOP: a.158.1.1 c.10.1.3 PDB: 2ass_B 1fqv_A* 1fs2_A | Back alignment and structure |
|---|
Probab=99.96 E-value=5.4e-29 Score=225.91 Aligned_cols=297 Identities=19% Similarity=0.265 Sum_probs=194.0
Q ss_pred CCCCcccCcHHHHHHHHhhhcCChhhhhHHhhhhhhHHHHHHhhhhhccccccchHHHHhccCCCCcEEecCCCCCCChh
Q 012207 8 NSNPFDFLSEEIIFNILDHLNNDPFARKSFSLTCRNFYSIESRHRKILKPLCAETLSRTSARYPFITQLDLSLCPRANDD 87 (468)
Q Consensus 8 ~~~~~~~LP~eil~~I~~~~l~~~~~~~~~~~v~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~~~ 87 (468)
....|+.||+||+.+||+ |++ .+|+.++++|||+|++++... ..++.++++++. +.+.
T Consensus 5 ~~~~~~~LP~eil~~If~-~L~-~~d~~~~~~vc~~W~~~~~~~-------------------~~~~~l~l~~~~-~~~~ 62 (336)
T 2ast_B 5 PGVSWDSLPDELLLGIFS-CLC-LPELLKVSGVCKRWYRLASDE-------------------SLWQTLDLTGKN-LHPD 62 (336)
T ss_dssp --CCSSSSCHHHHHHHHT-TSC-HHHHHHTTSSCHHHHHHHTCS-------------------TTSSEEECTTCB-CCHH
T ss_pred ccCChhhCCHHHHHHHHH-hCC-HHHHHHHHHHHHHHHHHhcCc-------------------hhheeecccccc-CCHH
Confidence 356799999999999999 997 999999999999999987432 124556666543 2232
Q ss_pred HHHhhhcccccCCccEEecCCCCcccHHHHHHhhhcCCCCcEEEccCCCccCHH-HHHHHHcCCCCCeEeccCCcccChH
Q 012207 88 ALSIVSSSSWKLTLRSINLSRSRLFTKVGLSSLTVNCRFLTEIDLSNGTEMGDA-AAAAIAEAKNLERLWLARCKLITDL 166 (468)
Q Consensus 88 ~~~~l~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~-~~~~l~~~~~L~~L~l~~~~~~~~~ 166 (468)
.+..+ ..++++.+++.++. +.... ..+. .+++|++|+++++. +.+. ....+..+++|++|+++++. +++.
T Consensus 63 ~~~~~----~~~~l~~L~l~~n~-l~~~~-~~~~-~~~~L~~L~L~~~~-l~~~~~~~~~~~~~~L~~L~L~~~~-l~~~ 133 (336)
T 2ast_B 63 VTGRL----LSQGVIAFRCPRSF-MDQPL-AEHF-SPFRVQHMDLSNSV-IEVSTLHGILSQCSKLQNLSLEGLR-LSDP 133 (336)
T ss_dssp HHHHH----HHTTCSEEECTTCE-ECSCC-CSCC-CCBCCCEEECTTCE-ECHHHHHHHHTTBCCCSEEECTTCB-CCHH
T ss_pred HHHhh----hhccceEEEcCCcc-ccccc-hhhc-cCCCCCEEEccCCC-cCHHHHHHHHhhCCCCCEEeCcCcc-cCHH
Confidence 22211 22566666666542 11111 1122 46777777777763 5544 33445567777777777753 5555
Q ss_pred hHHHHHhcCCCCcEEeccCCCCCChHHHHHHHhhCCCccEeeeccc-CCCCCCc-cccccCC-CCCeeeecCCC-CCChH
Q 012207 167 GIGRIAACCRKLKLLCLKWCIRVTDLGVELVALKCQEIRTLDLSYL-PITEKCL-PPVVKLQ-YLEDLVLEGCH-GIDDD 242 (468)
Q Consensus 167 ~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~-~~~~~~~-~~l~~~~-~L~~L~l~~~~-~~~~~ 242 (468)
....+.. +++|++|++++|..+++..+......+++|++|++++| .+++..+ ..+..++ +|++|++++|. .+.+.
T Consensus 134 ~~~~l~~-~~~L~~L~L~~~~~l~~~~l~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~l~~~L~~L~l~~~~~~~~~~ 212 (336)
T 2ast_B 134 IVNTLAK-NSNLVRLNLSGCSGFSEFALQTLLSSCSRLDELNLSWCFDFTEKHVQVAVAHVSETITQLNLSGYRKNLQKS 212 (336)
T ss_dssp HHHHHTT-CTTCSEEECTTCBSCCHHHHHHHHHHCTTCCEEECCCCTTCCHHHHHHHHHHSCTTCCEEECCSCGGGSCHH
T ss_pred HHHHHhc-CCCCCEEECCCCCCCCHHHHHHHHhcCCCCCEEcCCCCCCcChHHHHHHHHhcccCCCEEEeCCCcccCCHH
Confidence 5555544 77777777777656666666666667777777777777 6654332 2344577 77777777764 45555
Q ss_pred HHHHHHhcCCCCCEEEccCCcccChhhHHHHHhcCCccceEeecCCCCCchhHHHHhhcCCCCCeeEecCCcCChhHHHH
Q 012207 243 GLASVEYSCKSLKALNLSKCQNISHVGLSSLIKGADYLQQLILAYSFWVSADLSKCLHNFPMLQSIKFEDCPVARSGIKA 322 (468)
Q Consensus 243 ~~~~l~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~ 322 (468)
.+......+++|++|+++++..+++..... +..+++|++|++++|....+.....+..+++|++|++.+| +++..+..
T Consensus 213 ~l~~~~~~~~~L~~L~l~~~~~l~~~~~~~-l~~l~~L~~L~l~~~~~~~~~~~~~l~~~~~L~~L~l~~~-i~~~~~~~ 290 (336)
T 2ast_B 213 DLSTLVRRCPNLVHLDLSDSVMLKNDCFQE-FFQLNYLQHLSLSRCYDIIPETLLELGEIPTLKTLQVFGI-VPDGTLQL 290 (336)
T ss_dssp HHHHHHHHCTTCSEEECTTCTTCCGGGGGG-GGGCTTCCEEECTTCTTCCGGGGGGGGGCTTCCEEECTTS-SCTTCHHH
T ss_pred HHHHHHhhCCCCCEEeCCCCCcCCHHHHHH-HhCCCCCCEeeCCCCCCCCHHHHHHHhcCCCCCEEeccCc-cCHHHHHH
Confidence 555555458888888888887555444433 4567889999998887666666667788999999999998 88878887
Q ss_pred HHHhCCCCCeEecccCCCCC
Q 012207 323 IGNWHGSLKELSLSKCSGVT 342 (468)
Q Consensus 323 l~~~~~~L~~L~l~~~~~~~ 342 (468)
+...++. |++++ +.++
T Consensus 291 l~~~l~~---L~l~~-n~l~ 306 (336)
T 2ast_B 291 LKEALPH---LQINC-SHFT 306 (336)
T ss_dssp HHHHSTT---SEESC-CCSC
T ss_pred HHhhCcc---eEEec-ccCc
Confidence 7644444 45655 3444
|
| >3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A* | Back alignment and structure |
|---|
Probab=99.93 E-value=3.5e-28 Score=238.62 Aligned_cols=256 Identities=16% Similarity=0.147 Sum_probs=132.2
Q ss_pred hCCCccEeeecccCCCCCCccccccCCCCCeeeecCCCCCChHHHHHHHhcCCCCCEEEccCCccc--------------
Q 012207 200 KCQEIRTLDLSYLPITEKCLPPVVKLQYLEDLVLEGCHGIDDDGLASVEYSCKSLKALNLSKCQNI-------------- 265 (468)
Q Consensus 200 ~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~~L~~L~l~~~~~~-------------- 265 (468)
.+++|++|+++++.+. .....+..+++|++|+++++ .+.......+.. +++|++|+++++...
T Consensus 276 ~l~~L~~L~l~~n~l~-~lp~~l~~l~~L~~L~l~~n-~l~~~~~~~~~~-l~~L~~L~l~~n~~~~~~~~~~~~~l~~L 352 (606)
T 3t6q_A 276 CFSGLQELDLTATHLS-ELPSGLVGLSTLKKLVLSAN-KFENLCQISASN-FPSLTHLSIKGNTKRLELGTGCLENLENL 352 (606)
T ss_dssp TCTTCSEEECTTSCCS-CCCSSCCSCTTCCEEECTTC-CCSBGGGGCGGG-CTTCSEEECCSCSSCCBCCSSTTTTCTTC
T ss_pred cccCCCEEeccCCccC-CCChhhcccccCCEEECccC-CcCcCchhhhhc-cCcCCEEECCCCCcccccchhhhhccCcC
Confidence 4556666666666554 23334455566666666653 233222222222 455555555544321
Q ss_pred -----------ChhhHHHHHhcCCccceEeecCCCCCchhHHHHhhcCCCCCeeEecCCcCChhHHHHHHHhCCCCCeEe
Q 012207 266 -----------SHVGLSSLIKGADYLQQLILAYSFWVSADLSKCLHNFPMLQSIKFEDCPVARSGIKAIGNWHGSLKELS 334 (468)
Q Consensus 266 -----------~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~l~~~~~~L~~L~ 334 (468)
........+..+++|++|+++++ .+....+..+..+++|++|++++|.+...........+++|++|+
T Consensus 353 ~~L~l~~n~l~~~~~~~~~~~~l~~L~~L~l~~n-~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~ 431 (606)
T 3t6q_A 353 RELDLSHDDIETSDCCNLQLRNLSHLQSLNLSYN-EPLSLKTEAFKECPQLELLDLAFTRLKVKDAQSPFQNLHLLKVLN 431 (606)
T ss_dssp CEEECCSSCCCEEEESTTTTTTCTTCCEEECCSC-SCEEECTTTTTTCTTCSEEECTTCCEECCTTCCTTTTCTTCCEEE
T ss_pred CEEECCCCccccccCcchhcccCCCCCEEECCCC-cCCcCCHHHhcCCccCCeEECCCCcCCCcccchhhhCcccCCEEE
Confidence 11000111233455555555544 222233344455556666666665544322222122456666666
Q ss_pred cccCCCCCHHHHHHHHHhCCCCCeEecCCCCCCCHHHH--HHHHhcCCcCCeEEccCCCCCCHHHHHHHHhcCCCCCEEE
Q 012207 335 LSKCSGVTDEELSFVVQSHKELRKLDITCCRKITYASI--NSITKTCTSLTSLRMECCKLVSWEAFVLIGQQCQYLEELD 412 (468)
Q Consensus 335 l~~~~~~~~~~l~~~~~~~~~L~~L~l~~~~~~~~~~~--~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~ 412 (468)
++++ .++.. .+..+..+++|++|++++|. ++...+ ......+++|+.|++++|. ++......+. .+++|++|+
T Consensus 432 l~~n-~l~~~-~~~~~~~l~~L~~L~L~~n~-l~~~~~~~~~~~~~l~~L~~L~Ls~n~-l~~~~~~~~~-~l~~L~~L~ 506 (606)
T 3t6q_A 432 LSHS-LLDIS-SEQLFDGLPALQHLNLQGNH-FPKGNIQKTNSLQTLGRLEILVLSFCD-LSSIDQHAFT-SLKMMNHVD 506 (606)
T ss_dssp CTTC-CCBTT-CTTTTTTCTTCCEEECTTCB-CGGGEECSSCGGGGCTTCCEEECTTSC-CCEECTTTTT-TCTTCCEEE
T ss_pred CCCC-ccCCc-CHHHHhCCCCCCEEECCCCC-CCccccccchhhccCCCccEEECCCCc-cCccChhhhc-cccCCCEEE
Confidence 6664 22221 12224456677777777665 222110 0122356777777777754 4332222233 677777788
Q ss_pred ccCCCCChhhHHhcccCCCCCEEeeCCCCccCHHHHHHHHhcCcccCeeecCCCC
Q 012207 413 ITENEVNDEGLKSISRCSKLSSLKLGICSNITDEGLKHVGSTCSMLKELDLYRFS 467 (468)
Q Consensus 413 l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~~L~~L~l~~c~ 467 (468)
+++|.+++..+..+..+++| .|++++| .++... ......+++|+.|++++|+
T Consensus 507 Ls~N~l~~~~~~~l~~l~~L-~L~L~~N-~l~~~~-~~~~~~l~~L~~L~l~~N~ 558 (606)
T 3t6q_A 507 LSHNRLTSSSIEALSHLKGI-YLNLASN-HISIIL-PSLLPILSQQRTINLRQNP 558 (606)
T ss_dssp CCSSCCCGGGGGGGTTCCSC-EEECCSS-CCCCCC-GGGHHHHHTSSEEECTTCC
T ss_pred CCCCccCcCChhHhCccccc-EEECcCC-cccccC-HhhcccCCCCCEEeCCCCC
Confidence 87777777776777777777 7777777 666422 2223357788888888886
|
| >3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A* | Back alignment and structure |
|---|
Probab=99.93 E-value=1.1e-27 Score=234.96 Aligned_cols=251 Identities=14% Similarity=0.086 Sum_probs=132.9
Q ss_pred CccEeeecccCCCCCCccccccCCCCCeeeecCCCCCChHHHHHHHhcCCCCCEEEccCCcccChhhHHHHHhcCCccce
Q 012207 203 EIRTLDLSYLPITEKCLPPVVKLQYLEDLVLEGCHGIDDDGLASVEYSCKSLKALNLSKCQNISHVGLSSLIKGADYLQQ 282 (468)
Q Consensus 203 ~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~ 282 (468)
+|+.|+++++.+.......+..+++|++|+++++ .+.... ..+. .+++|++|+++++...... ...+..+++|+.
T Consensus 255 ~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n-~l~~lp-~~l~-~l~~L~~L~l~~n~l~~~~--~~~~~~l~~L~~ 329 (606)
T 3t6q_A 255 SVESINLQKHYFFNISSNTFHCFSGLQELDLTAT-HLSELP-SGLV-GLSTLKKLVLSANKFENLC--QISASNFPSLTH 329 (606)
T ss_dssp EEEEEECTTCCCSSCCTTTTTTCTTCSEEECTTS-CCSCCC-SSCC-SCTTCCEEECTTCCCSBGG--GGCGGGCTTCSE
T ss_pred ceeEEEeecCccCccCHHHhccccCCCEEeccCC-ccCCCC-hhhc-ccccCCEEECccCCcCcCc--hhhhhccCcCCE
Confidence 4566666666665555555778899999999995 444221 1233 3899999999988633221 123456778888
Q ss_pred EeecCCCCCchhHHHHhhcCCCCCeeEecCCcCChhH--HHHHHHhCCCCCeEecccCCCCCHHHHHHH-----------
Q 012207 283 LILAYSFWVSADLSKCLHNFPMLQSIKFEDCPVARSG--IKAIGNWHGSLKELSLSKCSGVTDEELSFV----------- 349 (468)
Q Consensus 283 L~l~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~--~~~l~~~~~~L~~L~l~~~~~~~~~~l~~~----------- 349 (468)
|+++++..........+..+++|++|++++|.+.... ...+. .+++|++|+++++. +... .+..
T Consensus 330 L~l~~n~~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~-~l~~L~~L~l~~n~-l~~~-~~~~~~~l~~L~~L~ 406 (606)
T 3t6q_A 330 LSIKGNTKRLELGTGCLENLENLRELDLSHDDIETSDCCNLQLR-NLSHLQSLNLSYNE-PLSL-KTEAFKECPQLELLD 406 (606)
T ss_dssp EECCSCSSCCBCCSSTTTTCTTCCEEECCSSCCCEEEESTTTTT-TCTTCCEEECCSCS-CEEE-CTTTTTTCTTCSEEE
T ss_pred EECCCCCcccccchhhhhccCcCCEEECCCCccccccCcchhcc-cCCCCCEEECCCCc-CCcC-CHHHhcCCccCCeEE
Confidence 8887764322222233556666666666666654432 11222 44556666665532 2110 0111
Q ss_pred --------------HHhCCCCCeEecCCCCCCCHHHHHHHHhcCCcCCeEEccCCCCCCHHHHH--HHHhcCCCCCEEEc
Q 012207 350 --------------VQSHKELRKLDITCCRKITYASINSITKTCTSLTSLRMECCKLVSWEAFV--LIGQQCQYLEELDI 413 (468)
Q Consensus 350 --------------~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~--~~~~~~~~L~~L~l 413 (468)
+..+++|+.|++++|. ++... ......+++|++|++++|. ++...+. .....+++|+.|++
T Consensus 407 l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~-l~~~~-~~~~~~l~~L~~L~L~~n~-l~~~~~~~~~~~~~l~~L~~L~L 483 (606)
T 3t6q_A 407 LAFTRLKVKDAQSPFQNLHLLKVLNLSHSL-LDISS-EQLFDGLPALQHLNLQGNH-FPKGNIQKTNSLQTLGRLEILVL 483 (606)
T ss_dssp CTTCCEECCTTCCTTTTCTTCCEEECTTCC-CBTTC-TTTTTTCTTCCEEECTTCB-CGGGEECSSCGGGGCTTCCEEEC
T ss_pred CCCCcCCCcccchhhhCcccCCEEECCCCc-cCCcC-HHHHhCCCCCCEEECCCCC-CCccccccchhhccCCCccEEEC
Confidence 2234455555555443 11111 1112245556666665543 2221110 11225566666666
Q ss_pred cCCCCChhhHHhcccCCCCCEEeeCCCCccCHHHHHHHHhcCcccCeeecCCCC
Q 012207 414 TENEVNDEGLKSISRCSKLSSLKLGICSNITDEGLKHVGSTCSMLKELDLYRFS 467 (468)
Q Consensus 414 ~~~~~~~~~~~~l~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~~L~~L~l~~c~ 467 (468)
++|.+++.....+..+++|+.|++++| +++......+ ..+++| .|++++|+
T Consensus 484 s~n~l~~~~~~~~~~l~~L~~L~Ls~N-~l~~~~~~~l-~~l~~L-~L~L~~N~ 534 (606)
T 3t6q_A 484 SFCDLSSIDQHAFTSLKMMNHVDLSHN-RLTSSSIEAL-SHLKGI-YLNLASNH 534 (606)
T ss_dssp TTSCCCEECTTTTTTCTTCCEEECCSS-CCCGGGGGGG-TTCCSC-EEECCSSC
T ss_pred CCCccCccChhhhccccCCCEEECCCC-ccCcCChhHh-Cccccc-EEECcCCc
Confidence 666666555555556666666666666 5554332222 356666 66666664
|
| >3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A* | Back alignment and structure |
|---|
Probab=99.93 E-value=3.6e-28 Score=243.68 Aligned_cols=326 Identities=19% Similarity=0.163 Sum_probs=191.5
Q ss_pred cCCCCcEEEccCCCccCHHHHHHHHcCCCCCeEeccCCcccChHhHHHHHhcCCCCcEEeccCCCCCChHHHHHHHhhCC
Q 012207 123 NCRFLTEIDLSNGTEMGDAAAAAIAEAKNLERLWLARCKLITDLGIGRIAACCRKLKLLCLKWCIRVTDLGVELVALKCQ 202 (468)
Q Consensus 123 ~~~~L~~L~l~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~ 202 (468)
.+++|++|+++++. +.......+..+++|++|+++++......... .+++|++|+++++. ++......+...++
T Consensus 221 ~l~~L~~L~Ls~n~-l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~----~l~~L~~L~L~~n~-l~~~ip~~~~~~~~ 294 (768)
T 3rgz_A 221 DCSALQHLDISGNK-LSGDFSRAISTCTELKLLNISSNQFVGPIPPL----PLKSLQYLSLAENK-FTGEIPDFLSGACD 294 (768)
T ss_dssp TCCSCCEEECCSSC-CCSCHHHHTTTCSSCCEEECCSSCCEESCCCC----CCTTCCEEECCSSE-EEESCCCCSCTTCT
T ss_pred cCCCCCEEECcCCc-CCCcccHHHhcCCCCCEEECCCCcccCccCcc----ccCCCCEEECcCCc-cCCccCHHHHhhcC
Confidence 45555555555552 33233344555555555555554321111000 25556666665542 11111111112346
Q ss_pred CccEeeecccCCCCCCccccccCCCCCeeeecCCCCCChHHHHHHHhcCCCCCEEEccCCcccChhhHHHHHhcCC-ccc
Q 012207 203 EIRTLDLSYLPITEKCLPPVVKLQYLEDLVLEGCHGIDDDGLASVEYSCKSLKALNLSKCQNISHVGLSSLIKGAD-YLQ 281 (468)
Q Consensus 203 ~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~-~L~ 281 (468)
+|++|++++|.+.......+.++++|++|+++++..........+.. +++|++|+++++...... ...+..++ +|+
T Consensus 295 ~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~ip~~~l~~-l~~L~~L~Ls~n~l~~~~--p~~l~~l~~~L~ 371 (768)
T 3rgz_A 295 TLTGLDLSGNHFYGAVPPFFGSCSLLESLALSSNNFSGELPMDTLLK-MRGLKVLDLSFNEFSGEL--PESLTNLSASLL 371 (768)
T ss_dssp TCSEEECCSSEEEECCCGGGGGCTTCCEEECCSSEEEEECCHHHHTT-CTTCCEEECCSSEEEECC--CTTHHHHTTTCS
T ss_pred cCCEEECcCCcCCCccchHHhcCCCccEEECCCCcccCcCCHHHHhc-CCCCCEEeCcCCccCccc--cHHHHhhhcCCc
Confidence 67777777766655555666667777777777643221222233444 777777777766422110 01112223 677
Q ss_pred eEeecCCCCCchhHHHHhhc--CCCCCeeEecCCcCChhHHHHHHHhCCCCCeEecccCCCCCHHHHHHHHHhCCCCCeE
Q 012207 282 QLILAYSFWVSADLSKCLHN--FPMLQSIKFEDCPVARSGIKAIGNWHGSLKELSLSKCSGVTDEELSFVVQSHKELRKL 359 (468)
Q Consensus 282 ~L~l~~~~~~~~~~~~~l~~--~~~L~~L~l~~~~~~~~~~~~l~~~~~~L~~L~l~~~~~~~~~~l~~~~~~~~~L~~L 359 (468)
.|+++++. +.+..+..+.. +++|+.|++.+|.+.+..+..+. .+++|++|+++++. ++.. ++..+..+++|+.|
T Consensus 372 ~L~Ls~N~-l~~~~~~~~~~~~~~~L~~L~L~~n~l~~~~p~~l~-~l~~L~~L~Ls~N~-l~~~-~p~~l~~l~~L~~L 447 (768)
T 3rgz_A 372 TLDLSSNN-FSGPILPNLCQNPKNTLQELYLQNNGFTGKIPPTLS-NCSELVSLHLSFNY-LSGT-IPSSLGSLSKLRDL 447 (768)
T ss_dssp EEECCSSE-EEEECCTTTTCSTTCCCCEEECCSSEEEEECCGGGG-GCTTCCEEECCSSE-EESC-CCGGGGGCTTCCEE
T ss_pred EEEccCCC-cCCCcChhhhhcccCCccEEECCCCccccccCHHHh-cCCCCCEEECcCCc-ccCc-ccHHHhcCCCCCEE
Confidence 77777662 33333333443 67888888888876654444444 67889999998853 3211 23335678899999
Q ss_pred ecCCCCCCCHHHHHHHHhcCCcCCeEEccCCCCCCHHHHHHHHhcCCCCCEEEccCCCCChhhHHhcccCCCCCEEeeCC
Q 012207 360 DITCCRKITYASINSITKTCTSLTSLRMECCKLVSWEAFVLIGQQCQYLEELDITENEVNDEGLKSISRCSKLSSLKLGI 439 (468)
Q Consensus 360 ~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~ 439 (468)
++++|.... . +......+++|++|++++|. ++......+. .+++|++|++++|.+++..+..++.+++|+.|++++
T Consensus 448 ~L~~n~l~~-~-~p~~~~~l~~L~~L~L~~N~-l~~~~p~~l~-~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~L~~ 523 (768)
T 3rgz_A 448 KLWLNMLEG-E-IPQELMYVKTLETLILDFND-LTGEIPSGLS-NCTNLNWISLSNNRLTGEIPKWIGRLENLAILKLSN 523 (768)
T ss_dssp ECCSSCCCS-C-CCGGGGGCTTCCEEECCSSC-CCSCCCGGGG-GCTTCCEEECCSSCCCSCCCGGGGGCTTCCEEECCS
T ss_pred ECCCCcccC-c-CCHHHcCCCCceEEEecCCc-ccCcCCHHHh-cCCCCCEEEccCCccCCcCChHHhcCCCCCEEECCC
Confidence 998876322 1 11223468899999998865 4322222233 789999999999998877777888899999999999
Q ss_pred CCccCHHHHHHHHhcCcccCeeecCCCC
Q 012207 440 CSNITDEGLKHVGSTCSMLKELDLYRFS 467 (468)
Q Consensus 440 ~~~l~~~~~~~~~~~~~~L~~L~l~~c~ 467 (468)
| .++.. ++.....+++|+.|++++|+
T Consensus 524 N-~l~~~-~p~~l~~l~~L~~L~Ls~N~ 549 (768)
T 3rgz_A 524 N-SFSGN-IPAELGDCRSLIWLDLNTNL 549 (768)
T ss_dssp S-CCEEE-CCGGGGGCTTCCEEECCSSE
T ss_pred C-cccCc-CCHHHcCCCCCCEEECCCCc
Confidence 9 77632 33344578999999999885
|
| >3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A* | Back alignment and structure |
|---|
Probab=99.93 E-value=4.2e-28 Score=243.21 Aligned_cols=255 Identities=20% Similarity=0.150 Sum_probs=151.1
Q ss_pred CCCccEeeecccCCCCCCccccccCCCCCeeeecCCCCCChHHHHHHHhcCCCCCEEEccCCcccChhhHHHHHhcCCcc
Q 012207 201 CQEIRTLDLSYLPITEKCLPPVVKLQYLEDLVLEGCHGIDDDGLASVEYSCKSLKALNLSKCQNISHVGLSSLIKGADYL 280 (468)
Q Consensus 201 ~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L 280 (468)
+++|++|++++|.+.+.....+.++++|++|+++++. +.......+.. +++|+.|+++++..... +...+..+++|
T Consensus 393 ~~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~N~-l~~~~p~~l~~-l~~L~~L~L~~n~l~~~--~p~~~~~l~~L 468 (768)
T 3rgz_A 393 KNTLQELYLQNNGFTGKIPPTLSNCSELVSLHLSFNY-LSGTIPSSLGS-LSKLRDLKLWLNMLEGE--IPQELMYVKTL 468 (768)
T ss_dssp TCCCCEEECCSSEEEEECCGGGGGCTTCCEEECCSSE-EESCCCGGGGG-CTTCCEEECCSSCCCSC--CCGGGGGCTTC
T ss_pred cCCccEEECCCCccccccCHHHhcCCCCCEEECcCCc-ccCcccHHHhc-CCCCCEEECCCCcccCc--CCHHHcCCCCc
Confidence 3455555555555444444455566666666666642 22222222333 66777777766653211 11224456677
Q ss_pred ceEeecCCCCCchhHHHHhhcCCCCCeeEecCCcCChhHHHHHHHhCCCCCeEecccCCCCCHHHHHHHHHhCCCCCeEe
Q 012207 281 QQLILAYSFWVSADLSKCLHNFPMLQSIKFEDCPVARSGIKAIGNWHGSLKELSLSKCSGVTDEELSFVVQSHKELRKLD 360 (468)
Q Consensus 281 ~~L~l~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~l~~~~~~L~~L~l~~~~~~~~~~l~~~~~~~~~L~~L~ 360 (468)
+.|+++++ .+....+..+..+++|+.|++++|.+.+..+..+. .+++|++|++++| .+... ++..+..+++|+.|+
T Consensus 469 ~~L~L~~N-~l~~~~p~~l~~l~~L~~L~L~~N~l~~~~p~~~~-~l~~L~~L~L~~N-~l~~~-~p~~l~~l~~L~~L~ 544 (768)
T 3rgz_A 469 ETLILDFN-DLTGEIPSGLSNCTNLNWISLSNNRLTGEIPKWIG-RLENLAILKLSNN-SFSGN-IPAELGDCRSLIWLD 544 (768)
T ss_dssp CEEECCSS-CCCSCCCGGGGGCTTCCEEECCSSCCCSCCCGGGG-GCTTCCEEECCSS-CCEEE-CCGGGGGCTTCCEEE
T ss_pred eEEEecCC-cccCcCCHHHhcCCCCCEEEccCCccCCcCChHHh-cCCCCCEEECCCC-cccCc-CCHHHcCCCCCCEEE
Confidence 77777776 34445555667777777777777776654444443 5677777777774 33211 233355677777777
Q ss_pred cCCCCCC---CHHHHH----------------------------------------------------------------
Q 012207 361 ITCCRKI---TYASIN---------------------------------------------------------------- 373 (468)
Q Consensus 361 l~~~~~~---~~~~~~---------------------------------------------------------------- 373 (468)
+++|... ......
T Consensus 545 Ls~N~l~g~ip~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~l~~~~~~g~~ 624 (768)
T 3rgz_A 545 LNTNLFNGTIPAAMFKQSGKIAANFIAGKRYVYIKNDGMKKECHGAGNLLEFQGIRSEQLNRLSTRNPCNITSRVYGGHT 624 (768)
T ss_dssp CCSSEEESBCCGGGGTTTTCBCCSTTCSCEEEEEECCSCCTTCCSSEEEEECTTCCGGGGGGGGGTCCSCTTSCEEEEEC
T ss_pred CCCCccCCcCChHHhcccchhhhhccccccccccccccccccccccccccccccccchhhhccccccccccccceecccC
Confidence 7766421 000000
Q ss_pred -HHHhcCCcCCeEEccCCCCCCHHHHHHHHhcCCCCCEEEccCCCCChhhHHhcccCCCCCEEeeCCCCccCHHHHHHHH
Q 012207 374 -SITKTCTSLTSLRMECCKLVSWEAFVLIGQQCQYLEELDITENEVNDEGLKSISRCSKLSSLKLGICSNITDEGLKHVG 452 (468)
Q Consensus 374 -~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~l~~~~~~~~~ 452 (468)
.....+++|+.|+++++. ++......+. .+++|+.|++++|.++...+..++.+++|+.|++++| +++.. ++...
T Consensus 625 ~~~~~~l~~L~~LdLs~N~-l~g~ip~~l~-~l~~L~~L~Ls~N~l~g~ip~~l~~L~~L~~LdLs~N-~l~g~-ip~~l 700 (768)
T 3rgz_A 625 SPTFDNNGSMMFLDMSYNM-LSGYIPKEIG-SMPYLFILNLGHNDISGSIPDEVGDLRGLNILDLSSN-KLDGR-IPQAM 700 (768)
T ss_dssp CCSCSSSBCCCEEECCSSC-CBSCCCGGGG-GCTTCCEEECCSSCCCSCCCGGGGGCTTCCEEECCSS-CCEEC-CCGGG
T ss_pred chhhhccccccEEECcCCc-ccccCCHHHh-ccccCCEEeCcCCccCCCCChHHhCCCCCCEEECCCC-cccCc-CChHH
Confidence 001124667788887744 4322222333 7788888888888888777778888888888888888 77642 33444
Q ss_pred hcCcccCeeecCCCC
Q 012207 453 STCSMLKELDLYRFS 467 (468)
Q Consensus 453 ~~~~~L~~L~l~~c~ 467 (468)
..+++|+.|++++|+
T Consensus 701 ~~l~~L~~L~ls~N~ 715 (768)
T 3rgz_A 701 SALTMLTEIDLSNNN 715 (768)
T ss_dssp GGCCCCSEEECCSSE
T ss_pred hCCCCCCEEECcCCc
Confidence 578888888888874
|
| >4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B} | Back alignment and structure |
|---|
Probab=99.93 E-value=1.4e-24 Score=197.66 Aligned_cols=237 Identities=19% Similarity=0.179 Sum_probs=138.2
Q ss_pred hCCCccEeeecccCCCCCCccccccCCCCCeeeecCCCCCChHHHHHHHhcCCCCCEEEccCCcccChhhHHHHHhcCCc
Q 012207 200 KCQEIRTLDLSYLPITEKCLPPVVKLQYLEDLVLEGCHGIDDDGLASVEYSCKSLKALNLSKCQNISHVGLSSLIKGADY 279 (468)
Q Consensus 200 ~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~ 279 (468)
.+++|++|+++++.+.+. ..+..+++|++|++++|........ +.. +++|++|++.++....... +..+++
T Consensus 108 ~l~~L~~L~l~~n~i~~~--~~~~~l~~L~~L~l~~n~~~~~~~~--~~~-l~~L~~L~l~~~~~~~~~~----~~~l~~ 178 (347)
T 4fmz_A 108 NLTNLRELYLNEDNISDI--SPLANLTKMYSLNLGANHNLSDLSP--LSN-MTGLNYLTVTESKVKDVTP----IANLTD 178 (347)
T ss_dssp TCTTCSEEECTTSCCCCC--GGGTTCTTCCEEECTTCTTCCCCGG--GTT-CTTCCEEECCSSCCCCCGG----GGGCTT
T ss_pred CCCcCCEEECcCCcccCc--hhhccCCceeEEECCCCCCcccccc--hhh-CCCCcEEEecCCCcCCchh----hccCCC
Confidence 445555555555544321 2244455555555555433322111 222 5555555555554222111 344556
Q ss_pred cceEeecCCCCCchhHHHHhhcCCCCCeeEecCCcCChhHHHHHHHhCCCCCeEecccCCCCCHHHHHHHHHhCCCCCeE
Q 012207 280 LQQLILAYSFWVSADLSKCLHNFPMLQSIKFEDCPVARSGIKAIGNWHGSLKELSLSKCSGVTDEELSFVVQSHKELRKL 359 (468)
Q Consensus 280 L~~L~l~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~l~~~~~~L~~L~l~~~~~~~~~~l~~~~~~~~~L~~L 359 (468)
|+.|+++++.. .... .+..+++|+.|++.++.+.+... ...+++|++|++++| .+++. .. +..+++|++|
T Consensus 179 L~~L~l~~n~l-~~~~--~~~~l~~L~~L~l~~n~l~~~~~---~~~~~~L~~L~l~~n-~l~~~--~~-~~~l~~L~~L 248 (347)
T 4fmz_A 179 LYSLSLNYNQI-EDIS--PLASLTSLHYFTAYVNQITDITP---VANMTRLNSLKIGNN-KITDL--SP-LANLSQLTWL 248 (347)
T ss_dssp CSEEECTTSCC-CCCG--GGGGCTTCCEEECCSSCCCCCGG---GGGCTTCCEEECCSS-CCCCC--GG-GTTCTTCCEE
T ss_pred CCEEEccCCcc-cccc--cccCCCccceeecccCCCCCCch---hhcCCcCCEEEccCC-ccCCC--cc-hhcCCCCCEE
Confidence 66666655532 1111 15566777777777776654433 225677777777774 33321 11 4567788888
Q ss_pred ecCCCCCCCHHHHHHHHhcCCcCCeEEccCCCCCCHHHHHHHHhcCCCCCEEEccCCCCChhhHHhcccCCCCCEEeeCC
Q 012207 360 DITCCRKITYASINSITKTCTSLTSLRMECCKLVSWEAFVLIGQQCQYLEELDITENEVNDEGLKSISRCSKLSSLKLGI 439 (468)
Q Consensus 360 ~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~ 439 (468)
++++|. ++.. .....+++|++|++++|. ++.. ..+ ..+++|+.|++++|.+++.....+..+++|+.|++++
T Consensus 249 ~l~~n~-l~~~---~~~~~l~~L~~L~l~~n~-l~~~--~~~-~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~ 320 (347)
T 4fmz_A 249 EIGTNQ-ISDI---NAVKDLTKLKMLNVGSNQ-ISDI--SVL-NNLSQLNSLFLNNNQLGNEDMEVIGGLTNLTTLFLSQ 320 (347)
T ss_dssp ECCSSC-CCCC---GGGTTCTTCCEEECCSSC-CCCC--GGG-GGCTTCSEEECCSSCCCGGGHHHHHTCTTCSEEECCS
T ss_pred ECCCCc-cCCC---hhHhcCCCcCEEEccCCc-cCCC--hhh-cCCCCCCEEECcCCcCCCcChhHhhccccCCEEEccC
Confidence 887775 3322 123467888888888764 4432 222 3778888888888888888777788888888888888
Q ss_pred CCccCHHHHHHHHhcCcccCeeecCCCC
Q 012207 440 CSNITDEGLKHVGSTCSMLKELDLYRFS 467 (468)
Q Consensus 440 ~~~l~~~~~~~~~~~~~~L~~L~l~~c~ 467 (468)
| .++.. .. ...+++|+.|++++|+
T Consensus 321 n-~l~~~--~~-~~~l~~L~~L~l~~N~ 344 (347)
T 4fmz_A 321 N-HITDI--RP-LASLSKMDSADFANQV 344 (347)
T ss_dssp S-SCCCC--GG-GGGCTTCSEESSSCC-
T ss_pred C-ccccc--cC-hhhhhccceeehhhhc
Confidence 8 67642 22 4578888888888886
|
| >2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A* | Back alignment and structure |
|---|
Probab=99.92 E-value=2.9e-26 Score=222.29 Aligned_cols=182 Identities=14% Similarity=0.104 Sum_probs=117.2
Q ss_pred CCCcEEecCCCCCCChhHHHhhhcccccCCccEEecCCCCcccHHHHHHhhhcCCCCcEEEccCCCccCHHHHHHHHcCC
Q 012207 71 PFITQLDLSLCPRANDDALSIVSSSSWKLTLRSINLSRSRLFTKVGLSSLTVNCRFLTEIDLSNGTEMGDAAAAAIAEAK 150 (468)
Q Consensus 71 ~~l~~l~l~~~~~~~~~~~~~l~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~l~~~~ 150 (468)
++++.|+++++. +...... ....+++|++|+++++. +.......+ ..+++|++|+++++ .+.......++.++
T Consensus 26 ~~L~~L~Ls~n~-l~~~~~~---~~~~l~~L~~L~Ls~n~-i~~~~~~~~-~~l~~L~~L~Ls~n-~l~~~~~~~~~~l~ 98 (549)
T 2z81_A 26 AAMKSLDLSFNK-ITYIGHG---DLRACANLQVLILKSSR-INTIEGDAF-YSLGSLEHLDLSDN-HLSSLSSSWFGPLS 98 (549)
T ss_dssp TTCCEEECCSSC-CCEECSS---TTSSCTTCCEEECTTSC-CCEECTTTT-TTCTTCCEEECTTS-CCCSCCHHHHTTCT
T ss_pred CCccEEECcCCc-cCccChh---hhhcCCcccEEECCCCC-cCccChhhc-cccccCCEEECCCC-ccCccCHHHhccCC
Confidence 689999999874 3322111 23567899999998864 332222223 37899999999988 45655556788999
Q ss_pred CCCeEeccCCcccChHhHHHHHhcCCCCcEEeccCCCCCChHHHHHHHhhCCCccEeeecccCCCCCCccccccCCCCCe
Q 012207 151 NLERLWLARCKLITDLGIGRIAACCRKLKLLCLKWCIRVTDLGVELVALKCQEIRTLDLSYLPITEKCLPPVVKLQYLED 230 (468)
Q Consensus 151 ~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~ 230 (468)
+|++|+++++. +...+.......+++|++|+++++..++..+.. ....+++|++|+++++.+.......+..+++|++
T Consensus 99 ~L~~L~Ls~n~-l~~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~-~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~ 176 (549)
T 2z81_A 99 SLKYLNLMGNP-YQTLGVTSLFPNLTNLQTLRIGNVETFSEIRRI-DFAGLTSLNELEIKALSLRNYQSQSLKSIRDIHH 176 (549)
T ss_dssp TCCEEECTTCC-CSSSCSSCSCTTCTTCCEEEEEESSSCCEECTT-TTTTCCEEEEEEEEETTCCEECTTTTTTCSEEEE
T ss_pred CCcEEECCCCc-ccccchhhhhhccCCccEEECCCCccccccCHh-hhhcccccCeeeccCCcccccChhhhhccccCce
Confidence 99999999875 332111112334889999999887534432211 2346889999999998877666666767777777
Q ss_pred eeecCCCCCChHHHHHHHhcCCCCCEEEccCCc
Q 012207 231 LVLEGCHGIDDDGLASVEYSCKSLKALNLSKCQ 263 (468)
Q Consensus 231 L~l~~~~~~~~~~~~~l~~~~~~L~~L~l~~~~ 263 (468)
|+++++. ..... ..+...+++|+.|+++++.
T Consensus 177 L~l~~n~-~~~~~-~~~~~~l~~L~~L~L~~n~ 207 (549)
T 2z81_A 177 LTLHLSE-SAFLL-EIFADILSSVRYLELRDTN 207 (549)
T ss_dssp EEEECSB-STTHH-HHHHHSTTTBSEEEEESCB
T ss_pred EecccCc-ccccc-hhhHhhcccccEEEccCCc
Confidence 7777643 33222 2222336666666666553
|
| >4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B} | Back alignment and structure |
|---|
Probab=99.92 E-value=1.3e-23 Score=191.36 Aligned_cols=217 Identities=18% Similarity=0.167 Sum_probs=135.5
Q ss_pred hCCCccEeeecccCCCCCCccccccCCCCCeeeecCCCCCChHHHHHHHhcCCCCCEEEccCCcccChhhHHHHHhcCCc
Q 012207 200 KCQEIRTLDLSYLPITEKCLPPVVKLQYLEDLVLEGCHGIDDDGLASVEYSCKSLKALNLSKCQNISHVGLSSLIKGADY 279 (468)
Q Consensus 200 ~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~ 279 (468)
.+++|+.|+++++.... .+..+..+++|++|+++++. +..... +. .+++|++|+++++....... +..+++
T Consensus 130 ~l~~L~~L~l~~n~~~~-~~~~~~~l~~L~~L~l~~~~-~~~~~~--~~-~l~~L~~L~l~~n~l~~~~~----~~~l~~ 200 (347)
T 4fmz_A 130 NLTKMYSLNLGANHNLS-DLSPLSNMTGLNYLTVTESK-VKDVTP--IA-NLTDLYSLSLNYNQIEDISP----LASLTS 200 (347)
T ss_dssp TCTTCCEEECTTCTTCC-CCGGGTTCTTCCEEECCSSC-CCCCGG--GG-GCTTCSEEECTTSCCCCCGG----GGGCTT
T ss_pred cCCceeEEECCCCCCcc-cccchhhCCCCcEEEecCCC-cCCchh--hc-cCCCCCEEEccCCccccccc----ccCCCc
Confidence 45555555555552221 22334555566666665533 221111 22 25666666666554222111 445566
Q ss_pred cceEeecCCCCCchhHHHHhhcCCCCCeeEecCCcCChhHHHHHHHhCCCCCeEecccCCCCCHHHHHHHHHhCCCCCeE
Q 012207 280 LQQLILAYSFWVSADLSKCLHNFPMLQSIKFEDCPVARSGIKAIGNWHGSLKELSLSKCSGVTDEELSFVVQSHKELRKL 359 (468)
Q Consensus 280 L~~L~l~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~l~~~~~~L~~L~l~~~~~~~~~~l~~~~~~~~~L~~L 359 (468)
|+.|+++++.. ..... +..+++|++|++++|.+.+... ...+++|++|+++++ .+++. ..+..+++|+.|
T Consensus 201 L~~L~l~~n~l-~~~~~--~~~~~~L~~L~l~~n~l~~~~~---~~~l~~L~~L~l~~n-~l~~~---~~~~~l~~L~~L 270 (347)
T 4fmz_A 201 LHYFTAYVNQI-TDITP--VANMTRLNSLKIGNNKITDLSP---LANLSQLTWLEIGTN-QISDI---NAVKDLTKLKML 270 (347)
T ss_dssp CCEEECCSSCC-CCCGG--GGGCTTCCEEECCSSCCCCCGG---GTTCTTCCEEECCSS-CCCCC---GGGTTCTTCCEE
T ss_pred cceeecccCCC-CCCch--hhcCCcCCEEEccCCccCCCcc---hhcCCCCCEEECCCC-ccCCC---hhHhcCCCcCEE
Confidence 66666666532 22211 5677788888888887665443 236788888888875 44431 235577899999
Q ss_pred ecCCCCCCCHHHHHHHHhcCCcCCeEEccCCCCCCHHHHHHHHhcCCCCCEEEccCCCCChhhHHhcccCCCCCEEeeCC
Q 012207 360 DITCCRKITYASINSITKTCTSLTSLRMECCKLVSWEAFVLIGQQCQYLEELDITENEVNDEGLKSISRCSKLSSLKLGI 439 (468)
Q Consensus 360 ~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~ 439 (468)
++++|. +++. .....+++|+.|++++|. ++......+. .+++|+.|++++|.+++... +..+++|+.|++++
T Consensus 271 ~l~~n~-l~~~---~~~~~l~~L~~L~L~~n~-l~~~~~~~l~-~l~~L~~L~L~~n~l~~~~~--~~~l~~L~~L~l~~ 342 (347)
T 4fmz_A 271 NVGSNQ-ISDI---SVLNNLSQLNSLFLNNNQ-LGNEDMEVIG-GLTNLTTLFLSQNHITDIRP--LASLSKMDSADFAN 342 (347)
T ss_dssp ECCSSC-CCCC---GGGGGCTTCSEEECCSSC-CCGGGHHHHH-TCTTCSEEECCSSSCCCCGG--GGGCTTCSEESSSC
T ss_pred EccCCc-cCCC---hhhcCCCCCCEEECcCCc-CCCcChhHhh-ccccCCEEEccCCccccccC--hhhhhccceeehhh
Confidence 999886 4432 123578999999999965 6666666665 89999999999999988654 77899999999999
Q ss_pred CCccC
Q 012207 440 CSNIT 444 (468)
Q Consensus 440 ~~~l~ 444 (468)
| .++
T Consensus 343 N-~i~ 346 (347)
T 4fmz_A 343 Q-VIK 346 (347)
T ss_dssp C----
T ss_pred h-ccc
Confidence 9 554
|
| >3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A* | Back alignment and structure |
|---|
Probab=99.92 E-value=1.7e-27 Score=233.77 Aligned_cols=207 Identities=17% Similarity=0.124 Sum_probs=124.1
Q ss_pred CCCCCEEEccCCcccChhhHHHHHhcCCccceEeecCCCCCchhHHHHhhcCCCCCeeEecCCcCChhHHHHHHHhCCCC
Q 012207 251 CKSLKALNLSKCQNISHVGLSSLIKGADYLQQLILAYSFWVSADLSKCLHNFPMLQSIKFEDCPVARSGIKAIGNWHGSL 330 (468)
Q Consensus 251 ~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~l~~~~~~L 330 (468)
+++|++|+++++...........+..+++|+.|+++++. +. ..+..+..+++|+.|++++|.+...........+++|
T Consensus 349 l~~L~~L~ls~n~l~~~~~~~~~~~~~~~L~~L~L~~n~-l~-~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L 426 (606)
T 3vq2_A 349 LPSLSYLDLSRNALSFSGCCSYSDLGTNSLRHLDLSFNG-AI-IMSANFMGLEELQHLDFQHSTLKRVTEFSAFLSLEKL 426 (606)
T ss_dssp CTTCCEEECCSSCEEEEEECCHHHHCCSCCCEEECCSCS-EE-EECCCCTTCTTCCEEECTTSEEESTTTTTTTTTCTTC
T ss_pred CCCCCEEECcCCccCCCcchhhhhccCCcccEeECCCCc-cc-cchhhccCCCCCCeeECCCCccCCccChhhhhccccC
Confidence 455555555554422111112334556667777776653 22 1224455667777777777765544331122256778
Q ss_pred CeEecccCCCCCHHHHHHHHHhCCCCCeEecCCCCCCCHHHHHHHHhcCCcCCeEEccCCCCCCHHHHHHHHhcCCCCCE
Q 012207 331 KELSLSKCSGVTDEELSFVVQSHKELRKLDITCCRKITYASINSITKTCTSLTSLRMECCKLVSWEAFVLIGQQCQYLEE 410 (468)
Q Consensus 331 ~~L~l~~~~~~~~~~l~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~ 410 (468)
++|+++++. +... .+..+..+++|++|++++|. ++...+......+++|++|++++|. ++......+. .+++|++
T Consensus 427 ~~L~l~~n~-l~~~-~~~~~~~l~~L~~L~l~~n~-l~~~~~~~~~~~l~~L~~L~Ls~n~-l~~~~~~~~~-~l~~L~~ 501 (606)
T 3vq2_A 427 LYLDISYTN-TKID-FDGIFLGLTSLNTLKMAGNS-FKDNTLSNVFANTTNLTFLDLSKCQ-LEQISWGVFD-TLHRLQL 501 (606)
T ss_dssp CEEECTTSC-CEEC-CTTTTTTCTTCCEEECTTCE-EGGGEECSCCTTCTTCCEEECTTSC-CCEECTTTTT-TCTTCCE
T ss_pred CEEECcCCC-CCcc-chhhhcCCCCCCEEECCCCc-CCCcchHHhhccCCCCCEEECCCCc-CCccChhhhc-ccccCCE
Confidence 888887753 3221 12234567788888888775 3321112223467888888888864 4433222233 7788888
Q ss_pred EEccCCCCChhhHHhcccCCCCCEEeeCCCCccCHHHHHHHHhcCc-ccCeeecCCCC
Q 012207 411 LDITENEVNDEGLKSISRCSKLSSLKLGICSNITDEGLKHVGSTCS-MLKELDLYRFS 467 (468)
Q Consensus 411 L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~-~L~~L~l~~c~ 467 (468)
|++++|.+++..+..+..+++|+.|++++| +++. ++.....+| +|+.|++.+|+
T Consensus 502 L~Ls~N~l~~~~~~~~~~l~~L~~L~l~~N-~l~~--~p~~~~~l~~~L~~l~l~~N~ 556 (606)
T 3vq2_A 502 LNMSHNNLLFLDSSHYNQLYSLSTLDCSFN-RIET--SKGILQHFPKSLAFFNLTNNS 556 (606)
T ss_dssp EECCSSCCSCEEGGGTTTCTTCCEEECTTS-CCCC--EESCGGGSCTTCCEEECCSCC
T ss_pred EECCCCcCCCcCHHHccCCCcCCEEECCCC-cCcc--cCHhHhhhcccCcEEEccCCC
Confidence 888888888876677778888888888888 6763 333244566 58888888876
|
| >1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A | Back alignment and structure |
|---|
Probab=99.92 E-value=1.5e-23 Score=198.41 Aligned_cols=341 Identities=19% Similarity=0.190 Sum_probs=193.9
Q ss_pred CCCcEEecCCCCCCChhHHHhhhcccccCCccEEecCCCCcccHHHHHHhhhcCCCCcEEEccCCCccCHHHHHHHHcCC
Q 012207 71 PFITQLDLSLCPRANDDALSIVSSSSWKLTLRSINLSRSRLFTKVGLSSLTVNCRFLTEIDLSNGTEMGDAAAAAIAEAK 150 (468)
Q Consensus 71 ~~l~~l~l~~~~~~~~~~~~~l~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~l~~~~ 150 (468)
++++.+++.++.- .. ++....+++|++|+++++. +.... . ...+++|++|+++++. +.... .+..++
T Consensus 46 ~~l~~L~l~~~~i-~~-----l~~~~~l~~L~~L~Ls~n~-l~~~~--~-~~~l~~L~~L~l~~n~-l~~~~--~~~~l~ 112 (466)
T 1o6v_A 46 DQVTTLQADRLGI-KS-----IDGVEYLNNLTQINFSNNQ-LTDIT--P-LKNLTKLVDILMNNNQ-IADIT--PLANLT 112 (466)
T ss_dssp HTCCEEECCSSCC-CC-----CTTGGGCTTCCEEECCSSC-CCCCG--G-GTTCTTCCEEECCSSC-CCCCG--GGTTCT
T ss_pred ccccEEecCCCCC-cc-----CcchhhhcCCCEEECCCCc-cCCch--h-hhccccCCEEECCCCc-cccCh--hhcCCC
Confidence 4566666665431 11 1122445677777777654 22111 1 3367777777777663 33322 166677
Q ss_pred CCCeEeccCCcccChHhHHHHHhcCCCCcEEeccCCCCCChHHHHHHHhhCCCccEeeecccCCCCCCccccccCCCCCe
Q 012207 151 NLERLWLARCKLITDLGIGRIAACCRKLKLLCLKWCIRVTDLGVELVALKCQEIRTLDLSYLPITEKCLPPVVKLQYLED 230 (468)
Q Consensus 151 ~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~ 230 (468)
+|++|+++++. +..... ...+++|++|+++++. +...+ ....+++|+.|++.+. +. ....+.++++|++
T Consensus 113 ~L~~L~L~~n~-l~~~~~---~~~l~~L~~L~l~~n~-l~~~~---~~~~l~~L~~L~l~~~-~~--~~~~~~~l~~L~~ 181 (466)
T 1o6v_A 113 NLTGLTLFNNQ-ITDIDP---LKNLTNLNRLELSSNT-ISDIS---ALSGLTSLQQLSFGNQ-VT--DLKPLANLTTLER 181 (466)
T ss_dssp TCCEEECCSSC-CCCCGG---GTTCTTCSEEEEEEEE-ECCCG---GGTTCTTCSEEEEEES-CC--CCGGGTTCTTCCE
T ss_pred CCCEEECCCCC-CCCChH---HcCCCCCCEEECCCCc-cCCCh---hhccCCcccEeecCCc-cc--CchhhccCCCCCE
Confidence 77777777654 222211 2336777777777653 33221 1346677777777532 22 2233666777777
Q ss_pred eeecCCCCCChHHHHHHHhcCCCCCEEEccCCcccChhhHHHHHhcCCccceEeecCCCCCchhHHHHhhcCCCCCeeEe
Q 012207 231 LVLEGCHGIDDDGLASVEYSCKSLKALNLSKCQNISHVGLSSLIKGADYLQQLILAYSFWVSADLSKCLHNFPMLQSIKF 310 (468)
Q Consensus 231 L~l~~~~~~~~~~~~~l~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~L~~L~l 310 (468)
|+++++. +.... .+.. +++|++|+++++....... ...+++|+.|+++++.... . ..+..+++|++|++
T Consensus 182 L~l~~n~-l~~~~--~l~~-l~~L~~L~l~~n~l~~~~~----~~~l~~L~~L~l~~n~l~~-~--~~l~~l~~L~~L~l 250 (466)
T 1o6v_A 182 LDISSNK-VSDIS--VLAK-LTNLESLIATNNQISDITP----LGILTNLDELSLNGNQLKD-I--GTLASLTNLTDLDL 250 (466)
T ss_dssp EECCSSC-CCCCG--GGGG-CTTCSEEECCSSCCCCCGG----GGGCTTCCEEECCSSCCCC-C--GGGGGCTTCSEEEC
T ss_pred EECcCCc-CCCCh--hhcc-CCCCCEEEecCCccccccc----ccccCCCCEEECCCCCccc-c--hhhhcCCCCCEEEC
Confidence 7777643 33221 2333 6777777777665332221 3456777777777663222 1 34566777777777
Q ss_pred cCCcCChhHHHHHHHhCCCCCeEecccCCCCCHHHHHHHHHhCCCCCeEecCCCCCCCHHHHHHHHhcCCcCCeEEccCC
Q 012207 311 EDCPVARSGIKAIGNWHGSLKELSLSKCSGVTDEELSFVVQSHKELRKLDITCCRKITYASINSITKTCTSLTSLRMECC 390 (468)
Q Consensus 311 ~~~~~~~~~~~~l~~~~~~L~~L~l~~~~~~~~~~l~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~ 390 (468)
++|.+..... + ..+++|++|+++++ .++.. .. +..+++|+.|++++|. ++.... ...+++|+.|++++|
T Consensus 251 ~~n~l~~~~~--~-~~l~~L~~L~l~~n-~l~~~--~~-~~~l~~L~~L~L~~n~-l~~~~~---~~~l~~L~~L~L~~n 319 (466)
T 1o6v_A 251 ANNQISNLAP--L-SGLTKLTELKLGAN-QISNI--SP-LAGLTALTNLELNENQ-LEDISP---ISNLKNLTYLTLYFN 319 (466)
T ss_dssp CSSCCCCCGG--G-TTCTTCSEEECCSS-CCCCC--GG-GTTCTTCSEEECCSSC-CSCCGG---GGGCTTCSEEECCSS
T ss_pred CCCccccchh--h-hcCCCCCEEECCCC-ccCcc--cc-ccCCCccCeEEcCCCc-ccCchh---hcCCCCCCEEECcCC
Confidence 7777654432 2 25677777777774 33321 11 4466777777777765 322111 346777777777775
Q ss_pred CCCCHHHHHHHHhcCCCCCEEEccCCCCChhhHHhcccCCCCCEEeeCCCCccCHHHHHHHHhcCcccCeeecCCCC
Q 012207 391 KLVSWEAFVLIGQQCQYLEELDITENEVNDEGLKSISRCSKLSSLKLGICSNITDEGLKHVGSTCSMLKELDLYRFS 467 (468)
Q Consensus 391 ~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~~L~~L~l~~c~ 467 (468)
. +++... + ..+++|+.|++++|.+++. ..+..+++|+.|++++| .+++.. . ...+++|+.|++++|+
T Consensus 320 ~-l~~~~~--~-~~l~~L~~L~l~~n~l~~~--~~l~~l~~L~~L~l~~n-~l~~~~--~-~~~l~~L~~L~l~~n~ 386 (466)
T 1o6v_A 320 N-ISDISP--V-SSLTKLQRLFFYNNKVSDV--SSLANLTNINWLSAGHN-QISDLT--P-LANLTRITQLGLNDQA 386 (466)
T ss_dssp C-CSCCGG--G-GGCTTCCEEECCSSCCCCC--GGGTTCTTCCEEECCSS-CCCBCG--G-GTTCTTCCEEECCCEE
T ss_pred c-CCCchh--h-ccCccCCEeECCCCccCCc--hhhccCCCCCEEeCCCC-ccCccc--h-hhcCCCCCEEeccCCc
Confidence 4 332211 2 2677777777777777664 35667777777777777 665422 2 4467777777777763
|
| >3v47_A TOLL-like receptor 5B and variable lymphocyte REC chimeric protein; innate immunity, leucine-rich repeat, innate immune receptor system; HET: NAG; 2.47A {Danio rerio} PDB: 3v44_A* | Back alignment and structure |
|---|
Probab=99.91 E-value=3.6e-26 Score=216.28 Aligned_cols=352 Identities=14% Similarity=0.132 Sum_probs=151.1
Q ss_pred CCCcEEecCCCCCCChhHHHhhhcccccCCccEEecCCCCcccHHHHHHhhhcCCCCcEEEccCCCccCHHHHHHHHcCC
Q 012207 71 PFITQLDLSLCPRANDDALSIVSSSSWKLTLRSINLSRSRLFTKVGLSSLTVNCRFLTEIDLSNGTEMGDAAAAAIAEAK 150 (468)
Q Consensus 71 ~~l~~l~l~~~~~~~~~~~~~l~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~l~~~~ 150 (468)
+++++|+++++. +...... ....+++|++|+++++....... ...+..+++|++|+++++. +.......+..++
T Consensus 30 ~~l~~L~Ls~n~-i~~~~~~---~~~~l~~L~~L~L~~n~~~~~i~-~~~~~~l~~L~~L~Ls~n~-l~~~~~~~~~~l~ 103 (455)
T 3v47_A 30 AHVNYVDLSLNS-IAELNET---SFSRLQDLQFLKVEQQTPGLVIR-NNTFRGLSSLIILKLDYNQ-FLQLETGAFNGLA 103 (455)
T ss_dssp TTCCEEECCSSC-CCEECTT---TTSSCTTCCEEECCCCSTTCEEC-TTTTTTCTTCCEEECTTCT-TCEECTTTTTTCT
T ss_pred CccCEEEecCCc-cCcCChh---HhccCccccEEECcCCcccceEC-cccccccccCCEEeCCCCc-cCccChhhccCcc
Confidence 456666666553 2221111 12345666666666553211111 1122356666666666653 3333334455566
Q ss_pred CCCeEeccCCcccChHhHHH-HHhcCCCCcEEeccCCCCCChHHHHHHHhhCCCccEeeecccCCCCCCccccccC--CC
Q 012207 151 NLERLWLARCKLITDLGIGR-IAACCRKLKLLCLKWCIRVTDLGVELVALKCQEIRTLDLSYLPITEKCLPPVVKL--QY 227 (468)
Q Consensus 151 ~L~~L~l~~~~~~~~~~~~~-~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~--~~ 227 (468)
+|++|+++++. ++...... ....+++|++|+++++. ++......+...+++|++|+++++.+.......+..+ ++
T Consensus 104 ~L~~L~L~~n~-l~~~~~~~~~~~~l~~L~~L~L~~n~-l~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~~~ 181 (455)
T 3v47_A 104 NLEVLTLTQCN-LDGAVLSGNFFKPLTSLEMLVLRDNN-IKKIQPASFFLNMRRFHVLDLTFNKVKSICEEDLLNFQGKH 181 (455)
T ss_dssp TCCEEECTTSC-CBTHHHHSSTTTTCTTCCEEECCSSB-CCSCCCCGGGGGCTTCCEEECTTCCBSCCCTTTSGGGTTCE
T ss_pred cCCEEeCCCCC-CCccccCcccccCcccCCEEECCCCc-cCccCcccccCCCCcccEEeCCCCcccccChhhhhcccccc
Confidence 66666666653 22211111 12235666666666642 2222111223355666666666665554444444432 45
Q ss_pred CCeeeecCCCCCChHHH--------HHHHhcCCCCCEEEccCCcccChhhHHHHHh--cCCccceEeecCCCCCchhH--
Q 012207 228 LEDLVLEGCHGIDDDGL--------ASVEYSCKSLKALNLSKCQNISHVGLSSLIK--GADYLQQLILAYSFWVSADL-- 295 (468)
Q Consensus 228 L~~L~l~~~~~~~~~~~--------~~l~~~~~~L~~L~l~~~~~~~~~~~~~~~~--~~~~L~~L~l~~~~~~~~~~-- 295 (468)
|+.|+++++. +..... ..+. .+++|++|+++++. +.......+.. ..++|+.|+++++.......
T Consensus 182 L~~L~l~~n~-l~~~~~~~~~~~~~~~~~-~~~~L~~L~Ls~n~-l~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~ 258 (455)
T 3v47_A 182 FTLLRLSSIT-LQDMNEYWLGWEKCGNPF-KNTSITTLDLSGNG-FKESMAKRFFDAIAGTKIQSLILSNSYNMGSSFGH 258 (455)
T ss_dssp EEEEECTTCB-CTTCSTTCTTHHHHCCTT-TTCEEEEEECTTSC-CCHHHHHHHHHHTTTCCEEEEECTTCTTTSCCTTC
T ss_pred ccccccccCc-ccccchhhcccccccccc-ccceeeeEecCCCc-ccccchhhhhccccccceeeEeeccccccccccch
Confidence 6666665532 211100 0011 13556666666654 22221122211 12556666665542211000
Q ss_pred -------HHHhh--cCCCCCeeEecCCcCChhHHHHHHHhCCCCCeEecccCCCCCHHHHHHHHHhCCCCCeEecCCCCC
Q 012207 296 -------SKCLH--NFPMLQSIKFEDCPVARSGIKAIGNWHGSLKELSLSKCSGVTDEELSFVVQSHKELRKLDITCCRK 366 (468)
Q Consensus 296 -------~~~l~--~~~~L~~L~l~~~~~~~~~~~~l~~~~~~L~~L~l~~~~~~~~~~l~~~~~~~~~L~~L~l~~~~~ 366 (468)
...+. ..++|+.|++++|.+.......+. .+++|++|+++++ .++.. .+..+..+++|++|++++|.
T Consensus 259 ~~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~-~l~~L~~L~Ls~n-~l~~~-~~~~~~~l~~L~~L~Ls~N~- 334 (455)
T 3v47_A 259 TNFKDPDNFTFKGLEASGVKTCDLSKSKIFALLKSVFS-HFTDLEQLTLAQN-EINKI-DDNAFWGLTHLLKLNLSQNF- 334 (455)
T ss_dssp CSSCCCCTTTTGGGTTSCCCEEECCSSCCCEECTTTTT-TCTTCCEEECTTS-CCCEE-CTTTTTTCTTCCEEECCSSC-
T ss_pred hhhccCcccccccccccCceEEEecCccccccchhhcc-cCCCCCEEECCCC-ccccc-ChhHhcCcccCCEEECCCCc-
Confidence 00000 123555555555554433222222 3455555555553 22211 01122344555555555543
Q ss_pred CCHHHHHHHHhcCCcCCeEEccCCCCCCHHHHHHHHhcCCCCCEEEccCCCCChhhHHhcccCCCCCEEeeCCC
Q 012207 367 ITYASINSITKTCTSLTSLRMECCKLVSWEAFVLIGQQCQYLEELDITENEVNDEGLKSISRCSKLSSLKLGIC 440 (468)
Q Consensus 367 ~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~ 440 (468)
++.... .....+++|++|++++|. ++......+. .+++|++|++++|.++......+..+++|+.|++++|
T Consensus 335 l~~~~~-~~~~~l~~L~~L~Ls~N~-l~~~~~~~~~-~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N 405 (455)
T 3v47_A 335 LGSIDS-RMFENLDKLEVLDLSYNH-IRALGDQSFL-GLPNLKELALDTNQLKSVPDGIFDRLTSLQKIWLHTN 405 (455)
T ss_dssp CCEECG-GGGTTCTTCCEEECCSSC-CCEECTTTTT-TCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSS
T ss_pred cCCcCh-hHhcCcccCCEEECCCCc-ccccChhhcc-ccccccEEECCCCccccCCHhHhccCCcccEEEccCC
Confidence 221111 111234555555555532 3222112222 4455555555555555443333444555555555555
|
| >2z7x_B TOLL-like receptor 1, variable lymphocyte recepto; TLR2, TLR1, lipopeptide, innate immunity, glycoPro immune response, inflammatory response, leucine-rich repeat membrane, receptor; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.91 E-value=5.8e-25 Score=211.55 Aligned_cols=367 Identities=15% Similarity=0.099 Sum_probs=217.2
Q ss_pred CCCcEEecCCCCCCChhHHHhhhcccccCCccEEecCCCCcccHHHHHHhhhcCCCCcEEEccCCCccCHHHHHHHHcCC
Q 012207 71 PFITQLDLSLCPRANDDALSIVSSSSWKLTLRSINLSRSRLFTKVGLSSLTVNCRFLTEIDLSNGTEMGDAAAAAIAEAK 150 (468)
Q Consensus 71 ~~l~~l~l~~~~~~~~~~~~~l~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~l~~~~ 150 (468)
++++.|+++++. +....... ...+++|++|+++++. +..... ..+..+++|++|+++++ .+...+.. .++
T Consensus 21 ~~L~~L~Ls~n~-i~~~~~~~---~~~l~~L~~L~Ls~n~-l~~~~~-~~~~~l~~L~~L~Ls~N-~l~~lp~~---~l~ 90 (520)
T 2z7x_B 21 QKTTILNISQNY-ISELWTSD---ILSLSKLRILIISHNR-IQYLDI-SVFKFNQELEYLDLSHN-KLVKISCH---PTV 90 (520)
T ss_dssp TTCSEEECCSSC-CCCCCHHH---HTTCTTCCEEECCSSC-CCEEEG-GGGTTCTTCCEEECCSS-CCCEEECC---CCC
T ss_pred ccccEEECCCCc-ccccChhh---ccccccccEEecCCCc-cCCcCh-HHhhcccCCCEEecCCC-ceeecCcc---ccC
Confidence 689999999875 33221111 2456899999998875 332222 23347899999999988 45543322 789
Q ss_pred CCCeEeccCCcccChHhHHHHHhcCCCCcEEeccCCCCCChHHHHHHHhhCCCc--cEeeecccCC--CCCCccccc---
Q 012207 151 NLERLWLARCKLITDLGIGRIAACCRKLKLLCLKWCIRVTDLGVELVALKCQEI--RTLDLSYLPI--TEKCLPPVV--- 223 (468)
Q Consensus 151 ~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L--~~L~l~~~~~--~~~~~~~l~--- 223 (468)
+|++|+++++. +....+......+++|++|+++++ .++... ...+++| +.|+++++.+ .......+.
T Consensus 91 ~L~~L~L~~N~-l~~~~~p~~~~~l~~L~~L~L~~n-~l~~~~----~~~l~~L~L~~L~l~~n~l~~~~~~~~~l~~l~ 164 (520)
T 2z7x_B 91 NLKHLDLSFNA-FDALPICKEFGNMSQLKFLGLSTT-HLEKSS----VLPIAHLNISKVLLVLGETYGEKEDPEGLQDFN 164 (520)
T ss_dssp CCSEEECCSSC-CSSCCCCGGGGGCTTCCEEEEEES-SCCGGG----GGGGTTSCEEEEEEEECTTTTSSCCTTTTTTCC
T ss_pred CccEEeccCCc-cccccchhhhccCCcceEEEecCc-ccchhh----ccccccceeeEEEeecccccccccccccccccc
Confidence 99999999875 332112122234899999999986 455422 3466777 9999998866 333222222
Q ss_pred -----------------------cCCCCCeeeecCCCC---CC--hHHHHHHHhcCCCCCEEEccCCcccChhhHHHHHh
Q 012207 224 -----------------------KLQYLEDLVLEGCHG---ID--DDGLASVEYSCKSLKALNLSKCQNISHVGLSSLIK 275 (468)
Q Consensus 224 -----------------------~~~~L~~L~l~~~~~---~~--~~~~~~l~~~~~~L~~L~l~~~~~~~~~~~~~~~~ 275 (468)
++++|+.++++++.. .. ...+..+.. +++|+.|++.++. +....+..+..
T Consensus 165 ~~~l~l~l~~n~~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~~l~~-l~~L~~L~l~~~~-l~~~~~~~~~~ 242 (520)
T 2z7x_B 165 TESLHIVFPTNKEFHFILDVSVKTVANLELSNIKCVLEDNKCSYFLSILAKLQT-NPKLSNLTLNNIE-TTWNSFIRILQ 242 (520)
T ss_dssp EEEEEEECCSSSCCCCCCCCCCTTCSEEEECCEEECCSTTTTHHHHHHHHGGGG-CTTCCEEEEEEEE-EEHHHHHHHHH
T ss_pred cceEEEEeccCcchhhhhhhhhhcccceeeccccccccccccceeecchhhhcc-ccchhhccccccc-cCHHHHHHHHH
Confidence 356666666666320 00 001112222 4555555554432 11111111110
Q ss_pred --cCCccceEeecCCC-----------------------------C-CchhHHHH----------------------hhc
Q 012207 276 --GADYLQQLILAYSF-----------------------------W-VSADLSKC----------------------LHN 301 (468)
Q Consensus 276 --~~~~L~~L~l~~~~-----------------------------~-~~~~~~~~----------------------l~~ 301 (468)
..++|++|+++++. . +....... ...
T Consensus 243 ~~~~~~L~~L~l~~n~l~~~~p~~~~~~~~~~l~~L~~l~l~~n~~~~p~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~ 322 (520)
T 2z7x_B 243 LVWHTTVWYFSISNVKLQGQLDFRDFDYSGTSLKALSIHQVVSDVFGFPQSYIYEIFSNMNIKNFTVSGTRMVHMLCPSK 322 (520)
T ss_dssp HHHTSSCSEEEEEEEEEESCCCCCCCCCCSCCCCEEEEEEEEECCCCSCTHHHHHHHHTCCCSEEEEESSCCCCCCCCSS
T ss_pred HhhhCcccEEEeecccccCccccchhhcccccCceeEeccccccceecchhhhhcccccCceeEEEcCCCccccccchhh
Confidence 11233333333221 1 00000111 156
Q ss_pred CCCCCeeEecCCcCChhHHHHHHHhCCCCCeEecccCCCCCH-HHHHHHHHhCCCCCeEecCCCCCCCHHHHHHHHhcCC
Q 012207 302 FPMLQSIKFEDCPVARSGIKAIGNWHGSLKELSLSKCSGVTD-EELSFVVQSHKELRKLDITCCRKITYASINSITKTCT 380 (468)
Q Consensus 302 ~~~L~~L~l~~~~~~~~~~~~l~~~~~~L~~L~l~~~~~~~~-~~l~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~ 380 (468)
+++|++|++++|.+.+..+..+. .+++|++|+++++ .++. ..++..+..+++|++|++++|........ .....++
T Consensus 323 l~~L~~L~Ls~n~l~~~~~~~~~-~l~~L~~L~L~~N-~l~~l~~~~~~~~~l~~L~~L~Ls~N~l~~~l~~-~~~~~l~ 399 (520)
T 2z7x_B 323 ISPFLHLDFSNNLLTDTVFENCG-HLTELETLILQMN-QLKELSKIAEMTTQMKSLQQLDISQNSVSYDEKK-GDCSWTK 399 (520)
T ss_dssp CCCCCEEECCSSCCCTTTTTTCC-CCSSCCEEECCSS-CCCBHHHHHHHHTTCTTCCEEECCSSCCBCCGGG-CSCCCCT
T ss_pred CCcccEEEeECCccChhhhhhhc-cCCCCCEEEccCC-ccCccccchHHHhhCCCCCEEECCCCcCCccccc-chhccCc
Confidence 77888888888887764444443 6788888888885 4543 23455667788888888888763221211 1123568
Q ss_pred cCCeEEccCCCCCCHHHHHHHHhcC-CCCCEEEccCCCCChhhHHhcccCCCCCEEeeCCCCccCHHHHHH-HHhcCccc
Q 012207 381 SLTSLRMECCKLVSWEAFVLIGQQC-QYLEELDITENEVNDEGLKSISRCSKLSSLKLGICSNITDEGLKH-VGSTCSML 458 (468)
Q Consensus 381 ~L~~L~l~~~~~~~~~~~~~~~~~~-~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~l~~~~~~~-~~~~~~~L 458 (468)
+|++|++++|. ++..... .+ ++|+.|++++|.++... ..+..+++|+.|++++| +++. ++. ....+++|
T Consensus 400 ~L~~L~Ls~N~-l~~~~~~----~l~~~L~~L~Ls~N~l~~ip-~~~~~l~~L~~L~L~~N-~l~~--l~~~~~~~l~~L 470 (520)
T 2z7x_B 400 SLLSLNMSSNI-LTDTIFR----CLPPRIKVLDLHSNKIKSIP-KQVVKLEALQELNVASN-QLKS--VPDGIFDRLTSL 470 (520)
T ss_dssp TCCEEECCSSC-CCGGGGG----SCCTTCCEEECCSSCCCCCC-GGGGGCTTCCEEECCSS-CCCC--CCTTTTTTCTTC
T ss_pred cCCEEECcCCC-CCcchhh----hhcccCCEEECCCCcccccc-hhhhcCCCCCEEECCCC-cCCc--cCHHHhccCCcc
Confidence 88888888854 5433222 23 68999999999888433 44558899999999999 7774 332 24578899
Q ss_pred CeeecCCCC
Q 012207 459 KELDLYRFS 467 (468)
Q Consensus 459 ~~L~l~~c~ 467 (468)
+.|++++|+
T Consensus 471 ~~L~l~~N~ 479 (520)
T 2z7x_B 471 QKIWLHTNP 479 (520)
T ss_dssp CEEECCSSC
T ss_pred cEEECcCCC
Confidence 999999886
|
| >1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A | Back alignment and structure |
|---|
Probab=99.90 E-value=8e-23 Score=193.36 Aligned_cols=320 Identities=17% Similarity=0.169 Sum_probs=237.0
Q ss_pred cCCccEEecCCCCcccHHHHHHhhhcCCCCcEEEccCCCccCHHHHHHHHcCCCCCeEeccCCcccChHhHHHHHhcCCC
Q 012207 98 KLTLRSINLSRSRLFTKVGLSSLTVNCRFLTEIDLSNGTEMGDAAAAAIAEAKNLERLWLARCKLITDLGIGRIAACCRK 177 (468)
Q Consensus 98 ~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~ 177 (468)
.++++.|++.++.... ++.+ ..+++|++|+++++. +.+.. .+..+++|++|++.++....... ...+++
T Consensus 45 l~~l~~L~l~~~~i~~---l~~~-~~l~~L~~L~Ls~n~-l~~~~--~~~~l~~L~~L~l~~n~l~~~~~----~~~l~~ 113 (466)
T 1o6v_A 45 LDQVTTLQADRLGIKS---IDGV-EYLNNLTQINFSNNQ-LTDIT--PLKNLTKLVDILMNNNQIADITP----LANLTN 113 (466)
T ss_dssp HHTCCEEECCSSCCCC---CTTG-GGCTTCCEEECCSSC-CCCCG--GGTTCTTCCEEECCSSCCCCCGG----GTTCTT
T ss_pred hccccEEecCCCCCcc---Ccch-hhhcCCCEEECCCCc-cCCch--hhhccccCCEEECCCCccccChh----hcCCCC
Confidence 4789999998764222 2233 379999999999984 55443 27889999999999875333222 345999
Q ss_pred CcEEeccCCCCCChHHHHHHHhhCCCccEeeecccCCCCCCccccccCCCCCeeeecCCCCCChHHHHHHHhcCCCCCEE
Q 012207 178 LKLLCLKWCIRVTDLGVELVALKCQEIRTLDLSYLPITEKCLPPVVKLQYLEDLVLEGCHGIDDDGLASVEYSCKSLKAL 257 (468)
Q Consensus 178 L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~~L~~L 257 (468)
|++|+++++. ++..+. ...+++|++|+++++.+.+ +..+..+++|++|.+.+ .+.... .+.. +++|+.|
T Consensus 114 L~~L~L~~n~-l~~~~~---~~~l~~L~~L~l~~n~l~~--~~~~~~l~~L~~L~l~~--~~~~~~--~~~~-l~~L~~L 182 (466)
T 1o6v_A 114 LTGLTLFNNQ-ITDIDP---LKNLTNLNRLELSSNTISD--ISALSGLTSLQQLSFGN--QVTDLK--PLAN-LTTLERL 182 (466)
T ss_dssp CCEEECCSSC-CCCCGG---GTTCTTCSEEEEEEEEECC--CGGGTTCTTCSEEEEEE--SCCCCG--GGTT-CTTCCEE
T ss_pred CCEEECCCCC-CCCChH---HcCCCCCCEEECCCCccCC--ChhhccCCcccEeecCC--cccCch--hhcc-CCCCCEE
Confidence 9999999974 444322 4689999999999997764 44678899999999975 222221 2444 8999999
Q ss_pred EccCCcccChhhHHHHHhcCCccceEeecCCCCCchhHHHHhhcCCCCCeeEecCCcCChhHHHHHHHhCCCCCeEeccc
Q 012207 258 NLSKCQNISHVGLSSLIKGADYLQQLILAYSFWVSADLSKCLHNFPMLQSIKFEDCPVARSGIKAIGNWHGSLKELSLSK 337 (468)
Q Consensus 258 ~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~l~~~~~~L~~L~l~~ 337 (468)
+++++...... .+..+++|++|+++++.. ....+ +..+++|+.|++++|.+.+.. .+ ..+++|++|++++
T Consensus 183 ~l~~n~l~~~~----~l~~l~~L~~L~l~~n~l-~~~~~--~~~l~~L~~L~l~~n~l~~~~--~l-~~l~~L~~L~l~~ 252 (466)
T 1o6v_A 183 DISSNKVSDIS----VLAKLTNLESLIATNNQI-SDITP--LGILTNLDELSLNGNQLKDIG--TL-ASLTNLTDLDLAN 252 (466)
T ss_dssp ECCSSCCCCCG----GGGGCTTCSEEECCSSCC-CCCGG--GGGCTTCCEEECCSSCCCCCG--GG-GGCTTCSEEECCS
T ss_pred ECcCCcCCCCh----hhccCCCCCEEEecCCcc-ccccc--ccccCCCCEEECCCCCcccch--hh-hcCCCCCEEECCC
Confidence 99998743321 256789999999998843 33222 678999999999999887642 23 2689999999998
Q ss_pred CCCCCHHHHHHHHHhCCCCCeEecCCCCCCCHHHHHHHHhcCCcCCeEEccCCCCCCHHHHHHHHhcCCCCCEEEccCCC
Q 012207 338 CSGVTDEELSFVVQSHKELRKLDITCCRKITYASINSITKTCTSLTSLRMECCKLVSWEAFVLIGQQCQYLEELDITENE 417 (468)
Q Consensus 338 ~~~~~~~~l~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~ 417 (468)
+. ++.. .. +..+++|+.|++++|. ++.... ...+++|+.|++++|. ++... .+ ..+++|+.|++++|.
T Consensus 253 n~-l~~~--~~-~~~l~~L~~L~l~~n~-l~~~~~---~~~l~~L~~L~L~~n~-l~~~~--~~-~~l~~L~~L~L~~n~ 320 (466)
T 1o6v_A 253 NQ-ISNL--AP-LSGLTKLTELKLGANQ-ISNISP---LAGLTALTNLELNENQ-LEDIS--PI-SNLKNLTYLTLYFNN 320 (466)
T ss_dssp SC-CCCC--GG-GTTCTTCSEEECCSSC-CCCCGG---GTTCTTCSEEECCSSC-CSCCG--GG-GGCTTCSEEECCSSC
T ss_pred Cc-cccc--hh-hhcCCCCCEEECCCCc-cCcccc---ccCCCccCeEEcCCCc-ccCch--hh-cCCCCCCEEECcCCc
Confidence 64 4432 22 5678999999999986 332221 4578999999999965 43322 23 389999999999999
Q ss_pred CChhhHHhcccCCCCCEEeeCCCCccCHHHHHHHHhcCcccCeeecCCCC
Q 012207 418 VNDEGLKSISRCSKLSSLKLGICSNITDEGLKHVGSTCSMLKELDLYRFS 467 (468)
Q Consensus 418 ~~~~~~~~l~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~~L~~L~l~~c~ 467 (468)
+++... +..+++|+.|++++| .+++. . ....+++|+.|++++|+
T Consensus 321 l~~~~~--~~~l~~L~~L~l~~n-~l~~~--~-~l~~l~~L~~L~l~~n~ 364 (466)
T 1o6v_A 321 ISDISP--VSSLTKLQRLFFYNN-KVSDV--S-SLANLTNINWLSAGHNQ 364 (466)
T ss_dssp CSCCGG--GGGCTTCCEEECCSS-CCCCC--G-GGTTCTTCCEEECCSSC
T ss_pred CCCchh--hccCccCCEeECCCC-ccCCc--h-hhccCCCCCEEeCCCCc
Confidence 988654 678999999999999 88753 3 34589999999999986
|
| >2ast_B S-phase kinase-associated protein 2; SCF-substrate complex, LRR, cell cycle, protein turnover COM ligase-ligase inhibitor complex; HET: TPO; 2.30A {Homo sapiens} SCOP: a.158.1.1 c.10.1.3 PDB: 2ass_B 1fqv_A* 1fs2_A | Back alignment and structure |
|---|
Probab=99.90 E-value=8.6e-23 Score=185.03 Aligned_cols=242 Identities=16% Similarity=0.231 Sum_probs=123.6
Q ss_pred CCCcEEeccCCCCCChHHHHHHHhhCCCccEeeecccCCCCCCccccccCCCCCeeeecCCCCCChHHHHHHHhcCCCCC
Q 012207 176 RKLKLLCLKWCIRVTDLGVELVALKCQEIRTLDLSYLPITEKCLPPVVKLQYLEDLVLEGCHGIDDDGLASVEYSCKSLK 255 (468)
Q Consensus 176 ~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~~L~ 255 (468)
..++.++++++ .+.+..+..+ ..++++.|++.++.+.... ..+..+++|++|+++++. +.+..+......+++|+
T Consensus 47 ~~~~~l~l~~~-~~~~~~~~~~--~~~~l~~L~l~~n~l~~~~-~~~~~~~~L~~L~L~~~~-l~~~~~~~~~~~~~~L~ 121 (336)
T 2ast_B 47 SLWQTLDLTGK-NLHPDVTGRL--LSQGVIAFRCPRSFMDQPL-AEHFSPFRVQHMDLSNSV-IEVSTLHGILSQCSKLQ 121 (336)
T ss_dssp TTSSEEECTTC-BCCHHHHHHH--HHTTCSEEECTTCEECSCC-CSCCCCBCCCEEECTTCE-ECHHHHHHHHTTBCCCS
T ss_pred hhheeeccccc-cCCHHHHHhh--hhccceEEEcCCccccccc-hhhccCCCCCEEEccCCC-cCHHHHHHHHhhCCCCC
Confidence 45888999875 4454333322 1278999999888665433 234466777777777743 45443443344466666
Q ss_pred EEEccCCcccChhhHHHHHhcCCccceEeecCCCCCchhHHHHhhcCCCCCeeEecCC-cCChhHHHHHHHhCCCCCeEe
Q 012207 256 ALNLSKCQNISHVGLSSLIKGADYLQQLILAYSFWVSADLSKCLHNFPMLQSIKFEDC-PVARSGIKAIGNWHGSLKELS 334 (468)
Q Consensus 256 ~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~L~~L~l~~~-~~~~~~~~~l~~~~~~L~~L~ 334 (468)
+|+++++. +.+ ..+..+..+++|++|++++| .+++..+..+...+++|++|+
T Consensus 122 ~L~L~~~~-l~~--------------------------~~~~~l~~~~~L~~L~L~~~~~l~~~~l~~~~~~~~~L~~L~ 174 (336)
T 2ast_B 122 NLSLEGLR-LSD--------------------------PIVNTLAKNSNLVRLNLSGCSGFSEFALQTLLSSCSRLDELN 174 (336)
T ss_dssp EEECTTCB-CCH--------------------------HHHHHHTTCTTCSEEECTTCBSCCHHHHHHHHHHCTTCCEEE
T ss_pred EEeCcCcc-cCH--------------------------HHHHHHhcCCCCCEEECCCCCCCCHHHHHHHHhcCCCCCEEc
Confidence 66666654 332 33333344444444444444 344433333333445555555
Q ss_pred cccCCCCCHHHHHHHHHhCC-CCCeEecCCCC-CCCHHHHHHHHhcCCcCCeEEccCCCCCCHHHHHHHHhcCCCCCEEE
Q 012207 335 LSKCSGVTDEELSFVVQSHK-ELRKLDITCCR-KITYASINSITKTCTSLTSLRMECCKLVSWEAFVLIGQQCQYLEELD 412 (468)
Q Consensus 335 l~~~~~~~~~~l~~~~~~~~-~L~~L~l~~~~-~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~ 412 (468)
+++|..+++.++...+..++ +|++|++++|. .+++..+......+++|++|++++|..+++.....+. .+++|++|+
T Consensus 175 l~~~~~l~~~~~~~~~~~l~~~L~~L~l~~~~~~~~~~~l~~~~~~~~~L~~L~l~~~~~l~~~~~~~l~-~l~~L~~L~ 253 (336)
T 2ast_B 175 LSWCFDFTEKHVQVAVAHVSETITQLNLSGYRKNLQKSDLSTLVRRCPNLVHLDLSDSVMLKNDCFQEFF-QLNYLQHLS 253 (336)
T ss_dssp CCCCTTCCHHHHHHHHHHSCTTCCEEECCSCGGGSCHHHHHHHHHHCTTCSEEECTTCTTCCGGGGGGGG-GCTTCCEEE
T ss_pred CCCCCCcChHHHHHHHHhcccCCCEEEeCCCcccCCHHHHHHHHhhCCCCCEEeCCCCCcCCHHHHHHHh-CCCCCCEee
Confidence 55543444444444444455 55555555543 3444444444444555555555554444444444333 445555555
Q ss_pred ccCC-CCChhhHHhcccCCCCCEEeeCCCCccCHHHHHHHH
Q 012207 413 ITEN-EVNDEGLKSISRCSKLSSLKLGICSNITDEGLKHVG 452 (468)
Q Consensus 413 l~~~-~~~~~~~~~l~~~~~L~~L~l~~~~~l~~~~~~~~~ 452 (468)
+++| .+++.++..+.++++|+.|++++| +++.++..+.
T Consensus 254 l~~~~~~~~~~~~~l~~~~~L~~L~l~~~--i~~~~~~~l~ 292 (336)
T 2ast_B 254 LSRCYDIIPETLLELGEIPTLKTLQVFGI--VPDGTLQLLK 292 (336)
T ss_dssp CTTCTTCCGGGGGGGGGCTTCCEEECTTS--SCTTCHHHHH
T ss_pred CCCCCCCCHHHHHHHhcCCCCCEEeccCc--cCHHHHHHHH
Confidence 5554 344444444444555555555554 4444444443
|
| >2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.90 E-value=1.8e-26 Score=224.89 Aligned_cols=183 Identities=17% Similarity=0.091 Sum_probs=114.9
Q ss_pred cCCccceEeecCCCCCchh--HHHHhhcCCCCCeeEecCCcCChhHHHHHHHhCCCCCeEecccCCCCCHHHHHHHHHhC
Q 012207 276 GADYLQQLILAYSFWVSAD--LSKCLHNFPMLQSIKFEDCPVARSGIKAIGNWHGSLKELSLSKCSGVTDEELSFVVQSH 353 (468)
Q Consensus 276 ~~~~L~~L~l~~~~~~~~~--~~~~l~~~~~L~~L~l~~~~~~~~~~~~l~~~~~~L~~L~l~~~~~~~~~~l~~~~~~~ 353 (468)
.+++|+.|+++++. +... .+..+..+++|++|++++|.+...... + ..+++|++|+++++. +........+..+
T Consensus 345 ~~~~L~~L~l~~n~-l~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~-~-~~l~~L~~L~l~~n~-l~~~~~~~~~~~l 420 (570)
T 2z63_A 345 DLPSLEFLDLSRNG-LSFKGCCSQSDFGTTSLKYLDLSFNGVITMSSN-F-LGLEQLEHLDFQHSN-LKQMSEFSVFLSL 420 (570)
T ss_dssp BCTTCCEEECCSSC-CBEEEEEEHHHHTCSCCCEEECCSCSEEEEEEE-E-ETCTTCCEEECTTSE-EESCTTSCTTTTC
T ss_pred cCCCCCEEeCcCCc-cCccccccccccccCccCEEECCCCcccccccc-c-cccCCCCEEEccCCc-cccccchhhhhcC
Confidence 34555556655542 2211 134455666777777776654432221 1 246677777777642 2211111124567
Q ss_pred CCCCeEecCCCCCCCHHHHHHHHhcCCcCCeEEccCCCCCCHHHHHHHHhcCCCCCEEEccCCCCChhhHHhcccCCCCC
Q 012207 354 KELRKLDITCCRKITYASINSITKTCTSLTSLRMECCKLVSWEAFVLIGQQCQYLEELDITENEVNDEGLKSISRCSKLS 433 (468)
Q Consensus 354 ~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~ 433 (468)
++|++|++++|.. ... .......+++|++|++++|. +++..+......+++|+.|++++|.+++..+..+..+++|+
T Consensus 421 ~~L~~L~l~~n~l-~~~-~~~~~~~l~~L~~L~l~~n~-l~~~~~p~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~ 497 (570)
T 2z63_A 421 RNLIYLDISHTHT-RVA-FNGIFNGLSSLEVLKMAGNS-FQENFLPDIFTELRNLTFLDLSQCQLEQLSPTAFNSLSSLQ 497 (570)
T ss_dssp TTCCEEECTTSCC-EEC-CTTTTTTCTTCCEEECTTCE-EGGGEECSCCTTCTTCCEEECTTSCCCEECTTTTTTCTTCC
T ss_pred CCCCEEeCcCCcc-ccc-chhhhhcCCcCcEEECcCCc-CccccchhhhhcccCCCEEECCCCccccCChhhhhcccCCC
Confidence 8888888888752 211 11223468899999998865 33222223333789999999999999988777788899999
Q ss_pred EEeeCCCCccCHHHHHHHHhcCcccCeeecCCCC
Q 012207 434 SLKLGICSNITDEGLKHVGSTCSMLKELDLYRFS 467 (468)
Q Consensus 434 ~L~l~~~~~l~~~~~~~~~~~~~~L~~L~l~~c~ 467 (468)
.|++++| +++... ......+++|+.|++++|+
T Consensus 498 ~L~l~~n-~l~~~~-~~~~~~l~~L~~L~l~~N~ 529 (570)
T 2z63_A 498 VLNMASN-QLKSVP-DGIFDRLTSLQKIWLHTNP 529 (570)
T ss_dssp EEECCSS-CCSCCC-TTTTTTCTTCCEEECCSSC
T ss_pred EEeCCCC-cCCCCC-HHHhhcccCCcEEEecCCc
Confidence 9999999 777532 2234578999999999986
|
| >4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697} | Back alignment and structure |
|---|
Probab=99.90 E-value=5.4e-26 Score=222.71 Aligned_cols=346 Identities=15% Similarity=0.145 Sum_probs=217.8
Q ss_pred cccCCccEEecCCCCcccHH----------------HHHHhhh--cCCCCcEEEccCCCccCHHHHHHHHcCCCCCeEec
Q 012207 96 SWKLTLRSINLSRSRLFTKV----------------GLSSLTV--NCRFLTEIDLSNGTEMGDAAAAAIAEAKNLERLWL 157 (468)
Q Consensus 96 ~~~~~L~~L~l~~~~~~~~~----------------~~~~~~~--~~~~L~~L~l~~~~~~~~~~~~~l~~~~~L~~L~l 157 (468)
..+++|++|+++++. +... .++.... .+++|++|+++++...+..+ ..+.++++|++|++
T Consensus 203 ~~l~~L~~L~Ls~n~-l~~~~~~~~~~~~~~~~~~~~ip~~l~~~~l~~L~~L~L~~n~l~~~~p-~~l~~l~~L~~L~L 280 (636)
T 4eco_A 203 MRLTKLRQFYMGNSP-FVAENICEAWENENSEYAQQYKTEDLKWDNLKDLTDVEVYNCPNLTKLP-TFLKALPEMQLINV 280 (636)
T ss_dssp GGCTTCCEEEEESCC-CCGGGBSSSCSCTTSHHHHHHTTSCCCGGGCTTCCEEEEECCTTCSSCC-TTTTTCSSCCEEEC
T ss_pred hcccCCCEEECcCCc-cccccccccccccccchhcccCchhhhhcccCCCCEEEecCCcCCccCh-HHHhcCCCCCEEEC
Confidence 456778888887765 3331 1333333 67888888888774333332 56777888888888
Q ss_pred cCCcccCh-HhHHHHHh-----cCCCCcEEeccCCCCCChHHHHHHHhhCCCccEeeecccCCCCCCccccccCCCCCee
Q 012207 158 ARCKLITD-LGIGRIAA-----CCRKLKLLCLKWCIRVTDLGVELVALKCQEIRTLDLSYLPITEKCLPPVVKLQYLEDL 231 (468)
Q Consensus 158 ~~~~~~~~-~~~~~~~~-----~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L 231 (468)
+++..++. .....+.. .+++|++|+++++. ++..+.......+++|++|++++|.+.+... .+..+++|++|
T Consensus 281 s~n~~l~~~~lp~~~~~L~~~~~l~~L~~L~L~~n~-l~~ip~~~~l~~l~~L~~L~L~~N~l~g~ip-~~~~l~~L~~L 358 (636)
T 4eco_A 281 ACNRGISGEQLKDDWQALADAPVGEKIQIIYIGYNN-LKTFPVETSLQKMKKLGMLECLYNQLEGKLP-AFGSEIKLASL 358 (636)
T ss_dssp TTCTTSCHHHHHHHHHHHHHSGGGGTCCEEECCSSC-CSSCCCHHHHTTCTTCCEEECCSCCCEEECC-CCEEEEEESEE
T ss_pred cCCCCCccccchHHHHhhhccccCCCCCEEECCCCc-CCccCchhhhccCCCCCEEeCcCCcCccchh-hhCCCCCCCEE
Confidence 88653443 22222222 24788888888763 4322211144577888888888887763333 66777888888
Q ss_pred eecCCCCCChHHHHHHHhcCCC-CCEEEccCCcccChhhHHHHHhc--CCccceEeecCCCCCchhHHHHhh-------c
Q 012207 232 VLEGCHGIDDDGLASVEYSCKS-LKALNLSKCQNISHVGLSSLIKG--ADYLQQLILAYSFWVSADLSKCLH-------N 301 (468)
Q Consensus 232 ~l~~~~~~~~~~~~~l~~~~~~-L~~L~l~~~~~~~~~~~~~~~~~--~~~L~~L~l~~~~~~~~~~~~~l~-------~ 301 (468)
+++++ .+... ...+.. +++ |+.|+++++... . +...+.. +++|+.|+++++ .+....+..+. .
T Consensus 359 ~L~~N-~l~~l-p~~l~~-l~~~L~~L~Ls~N~l~-~--lp~~~~~~~l~~L~~L~Ls~N-~l~~~~p~~l~~~~~~~~~ 431 (636)
T 4eco_A 359 NLAYN-QITEI-PANFCG-FTEQVENLSFAHNKLK-Y--IPNIFDAKSVSVMSAIDFSYN-EIGSVDGKNFDPLDPTPFK 431 (636)
T ss_dssp ECCSS-EEEEC-CTTSEE-ECTTCCEEECCSSCCS-S--CCSCCCTTCSSCEEEEECCSS-CTTTTTTCSSCTTCSSCCC
T ss_pred ECCCC-ccccc-cHhhhh-hcccCcEEEccCCcCc-c--cchhhhhcccCccCEEECcCC-cCCCcchhhhccccccccc
Confidence 88874 33311 122333 677 888988887632 1 1111222 347888888887 44444444455 6
Q ss_pred CCCCCeeEecCCcCChhHHHHHHHhCCCCCeEecccCCCCCHHHHHH-HHHh-------CCCCCeEecCCCCCCCHHHHH
Q 012207 302 FPMLQSIKFEDCPVARSGIKAIGNWHGSLKELSLSKCSGVTDEELSF-VVQS-------HKELRKLDITCCRKITYASIN 373 (468)
Q Consensus 302 ~~~L~~L~l~~~~~~~~~~~~l~~~~~~L~~L~l~~~~~~~~~~l~~-~~~~-------~~~L~~L~l~~~~~~~~~~~~ 373 (468)
+++|++|++++|.+.. ....+...+++|++|+++++ .++. ++. .+.. +++|+.|++++|. ++ .+.
T Consensus 432 ~~~L~~L~Ls~N~l~~-lp~~~~~~l~~L~~L~Ls~N-~l~~--i~~~~~~~~~~~~~~l~~L~~L~Ls~N~-l~--~lp 504 (636)
T 4eco_A 432 GINVSSINLSNNQISK-FPKELFSTGSPLSSINLMGN-MLTE--IPKNSLKDENENFKNTYLLTSIDLRFNK-LT--KLS 504 (636)
T ss_dssp CCCEEEEECCSSCCCS-CCTHHHHTTCCCSEEECCSS-CCSB--CCSSSSEETTEECTTGGGCCEEECCSSC-CC--BCC
T ss_pred CCCCCEEECcCCccCc-CCHHHHccCCCCCEEECCCC-CCCC--cCHHHhccccccccccCCccEEECcCCc-CC--ccC
Confidence 6789999999988773 33344446789999999884 4441 211 1111 1289999998876 44 222
Q ss_pred HHHh--cCCcCCeEEccCCCCCCHHHHHHHHhcCCCCCEEEcc------CCCCChhhHHhcccCCCCCEEeeCCCCccCH
Q 012207 374 SITK--TCTSLTSLRMECCKLVSWEAFVLIGQQCQYLEELDIT------ENEVNDEGLKSISRCSKLSSLKLGICSNITD 445 (468)
Q Consensus 374 ~~~~--~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~------~~~~~~~~~~~l~~~~~L~~L~l~~~~~l~~ 445 (468)
.... .+++|+.|+++++. ++. ++.....+++|+.|+++ +|.+....+..+..+++|+.|++++| .++.
T Consensus 505 ~~~~~~~l~~L~~L~Ls~N~-l~~--ip~~~~~l~~L~~L~Ls~N~~ls~N~l~~~~p~~l~~l~~L~~L~Ls~N-~l~~ 580 (636)
T 4eco_A 505 DDFRATTLPYLVGIDLSYNS-FSK--FPTQPLNSSTLKGFGIRNQRDAQGNRTLREWPEGITLCPSLTQLQIGSN-DIRK 580 (636)
T ss_dssp GGGSTTTCTTCCEEECCSSC-CSS--CCCGGGGCSSCCEEECCSCBCTTCCBCCCCCCTTGGGCSSCCEEECCSS-CCCB
T ss_pred hhhhhccCCCcCEEECCCCC-CCC--cChhhhcCCCCCEEECCCCcccccCcccccChHHHhcCCCCCEEECCCC-cCCc
Confidence 3333 68899999998854 443 22222378899999994 46666666667778899999999999 7753
Q ss_pred HHHHHHHhcCcccCeeecCCCC
Q 012207 446 EGLKHVGSTCSMLKELDLYRFS 467 (468)
Q Consensus 446 ~~~~~~~~~~~~L~~L~l~~c~ 467 (468)
++.. -.++|+.|++++|+
T Consensus 581 --ip~~--~~~~L~~L~Ls~N~ 598 (636)
T 4eco_A 581 --VNEK--ITPNISVLDIKDNP 598 (636)
T ss_dssp --CCSC--CCTTCCEEECCSCT
T ss_pred --cCHh--HhCcCCEEECcCCC
Confidence 3322 23789999999886
|
| >1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A* | Back alignment and structure |
|---|
Probab=99.90 E-value=4.5e-25 Score=219.44 Aligned_cols=330 Identities=18% Similarity=0.131 Sum_probs=177.5
Q ss_pred CCCcEEEccCCCccCHHHHHHHHcCCCCCeEeccCCcccChHhHHHHHhcCCCCcEEeccCCCCCChHHHH-------HH
Q 012207 125 RFLTEIDLSNGTEMGDAAAAAIAEAKNLERLWLARCKLITDLGIGRIAACCRKLKLLCLKWCIRVTDLGVE-------LV 197 (468)
Q Consensus 125 ~~L~~L~l~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~-------~~ 197 (468)
++|++|+++++. +.......+..+++|++|+++++. +.......+ ..+++|+.|++.++......... ..
T Consensus 248 ~~L~~L~Ls~n~-l~~~~~~~~~~l~~L~~L~L~~n~-l~~~~~~~~-~~l~~L~~L~L~~~~~~~~~~~~~lp~i~~~~ 324 (680)
T 1ziw_A 248 TNLTMLDLSYNN-LNVVGNDSFAWLPQLEYFFLEYNN-IQHLFSHSL-HGLFNVRYLNLKRSFTKQSISLASLPKIDDFS 324 (680)
T ss_dssp SCCCEEECTTSC-CCEECTTTTTTCTTCCEEECCSCC-BSEECTTTT-TTCTTCCEEECTTCBCCC------CCEECTTT
T ss_pred CCCCEEECCCCC-cCccCcccccCcccccEeeCCCCc-cCccChhhh-cCCCCccEEeccchhhhcccccccccccChhh
Confidence 347777776662 333333445566777777776653 222111111 22666666666543211111000 01
Q ss_pred HhhCCCccEeeecccCCCCCCccccccCCCCCeeeecCCC---------------------------CCChHHHHHHHhc
Q 012207 198 ALKCQEIRTLDLSYLPITEKCLPPVVKLQYLEDLVLEGCH---------------------------GIDDDGLASVEYS 250 (468)
Q Consensus 198 ~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~---------------------------~~~~~~~~~l~~~ 250 (468)
...+++|++|+++++.+.......+..+++|++|+++++. .+.......+..
T Consensus 325 ~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~~~~~~l~~~~f~~~~~~~L~~L~L~~n~l~~~~~~~~~~- 403 (680)
T 1ziw_A 325 FQWLKCLEHLNMEDNDIPGIKSNMFTGLINLKYLSLSNSFTSLRTLTNETFVSLAHSPLHILNLTKNKISKIESDAFSW- 403 (680)
T ss_dssp TTTCTTCCEEECCSCCBCCCCTTTTTTCTTCCEEECTTCBSCCCEECTTTTGGGTTSCCCEEECTTSCCCEECTTTTTT-
T ss_pred cccCCCCCEEECCCCccCCCChhHhccccCCcEEECCCCchhhhhcchhhhcccccCcCceEECCCCCCCeEChhhhhC-
Confidence 2356677777777666655444455566666666666532 111111112222
Q ss_pred CCCCCEEEccCCcccChhhHHHHHhcCCccceEeecCCCCCchhHHHHhhcCCCCCeeEecCCcCCh--hHHHHHHHhCC
Q 012207 251 CKSLKALNLSKCQNISHVGLSSLIKGADYLQQLILAYSFWVSADLSKCLHNFPMLQSIKFEDCPVAR--SGIKAIGNWHG 328 (468)
Q Consensus 251 ~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~--~~~~~l~~~~~ 328 (468)
+++|+.|+++++...... ....+..+++|+.|+++++. +.......+..+++|+.|++.++.+.. ..+..+ ..++
T Consensus 404 l~~L~~L~L~~N~l~~~~-~~~~~~~l~~L~~L~Ls~n~-l~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~p~~~-~~l~ 480 (680)
T 1ziw_A 404 LGHLEVLDLGLNEIGQEL-TGQEWRGLENIFEIYLSYNK-YLQLTRNSFALVPSLQRLMLRRVALKNVDSSPSPF-QPLR 480 (680)
T ss_dssp CTTCCEEECCSSCCEEEC-CSGGGTTCTTCCEEECCSCS-EEECCTTTTTTCTTCCEEECTTSCCBCTTCSSCTT-TTCT
T ss_pred CCCCCEEeCCCCcCcccc-CcccccCcccccEEecCCCC-cceeChhhhhcCcccccchhccccccccccCCccc-ccCC
Confidence 455555555554321100 00113345555566555542 222223344455666666666655431 111112 2567
Q ss_pred CCCeEecccCCCCCHHHHHHHHHhCCCCCeEecCCCCCCCHHHHH-------HHHhcCCcCCeEEccCCCCCCHHHHHHH
Q 012207 329 SLKELSLSKCSGVTDEELSFVVQSHKELRKLDITCCRKITYASIN-------SITKTCTSLTSLRMECCKLVSWEAFVLI 401 (468)
Q Consensus 329 ~L~~L~l~~~~~~~~~~l~~~~~~~~~L~~L~l~~~~~~~~~~~~-------~~~~~~~~L~~L~l~~~~~~~~~~~~~~ 401 (468)
+|+.|+++++ .++.. ....+..+++|+.|++++|. ++..... .....+++|+.|+++++. ++......+
T Consensus 481 ~L~~L~Ls~N-~l~~i-~~~~~~~l~~L~~L~Ls~N~-l~~~~~~~~~~~~~~~~~~l~~L~~L~L~~N~-l~~i~~~~~ 556 (680)
T 1ziw_A 481 NLTILDLSNN-NIANI-NDDMLEGLEKLEILDLQHNN-LARLWKHANPGGPIYFLKGLSHLHILNLESNG-FDEIPVEVF 556 (680)
T ss_dssp TCCEEECCSS-CCCCC-CTTTTTTCTTCCEEECCSSC-CGGGGSTTSTTSCCCTTTTCTTCCEEECCSSC-CCCCCTTTT
T ss_pred CCCEEECCCC-CCCcC-ChhhhccccccCEEeCCCCC-ccccchhhccCCcchhhcCCCCCCEEECCCCC-CCCCCHHHc
Confidence 7888888774 34321 12234567788888888775 3321100 012467888888888753 442211122
Q ss_pred HhcCCCCCEEEccCCCCChhhHHhcccCCCCCEEeeCCCCccCHHHHHHHHhcCcccCeeecCCCC
Q 012207 402 GQQCQYLEELDITENEVNDEGLKSISRCSKLSSLKLGICSNITDEGLKHVGSTCSMLKELDLYRFS 467 (468)
Q Consensus 402 ~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~~L~~L~l~~c~ 467 (468)
..+++|+.|++++|.++......+..+++|+.|++++| +++......+...+++|+.|++.+|+
T Consensus 557 -~~l~~L~~L~Ls~N~l~~l~~~~~~~l~~L~~L~L~~N-~l~~~~~~~~~~~~~~L~~l~l~~N~ 620 (680)
T 1ziw_A 557 -KDLFELKIIDLGLNNLNTLPASVFNNQVSLKSLNLQKN-LITSVEKKVFGPAFRNLTELDMRFNP 620 (680)
T ss_dssp -TTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECTTS-CCCBCCHHHHHHHHTTCSEEECTTCC
T ss_pred -ccccCcceeECCCCCCCcCCHhHhCCCCCCCEEECCCC-cCCccChhHhcccccccCEEEccCCC
Confidence 37888999999988888766666778899999999999 88764433333367899999999887
|
| >1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A* | Back alignment and structure |
|---|
Probab=99.89 E-value=2.2e-24 Score=214.41 Aligned_cols=308 Identities=18% Similarity=0.156 Sum_probs=167.8
Q ss_pred HhccCCCCcEEecCCCCCCChhHHHhhhcccccCCccEEecCCCCcccHHHHHHhhhcCCCCcEEEccCCCccCHHHHHH
Q 012207 66 TSARYPFITQLDLSLCPRANDDALSIVSSSSWKLTLRSINLSRSRLFTKVGLSSLTVNCRFLTEIDLSNGTEMGDAAAAA 145 (468)
Q Consensus 66 ~~~~~~~l~~l~l~~~~~~~~~~~~~l~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~ 145 (468)
.+..+++|+.|+++++. +...... ....+++|++|+++++. +.... ...+..+++|++|+++++. +.......
T Consensus 44 ~~~~l~~L~~L~Ls~n~-l~~~~~~---~~~~l~~L~~L~L~~n~-l~~l~-~~~~~~l~~L~~L~L~~n~-l~~~~~~~ 116 (680)
T 1ziw_A 44 NFTRYSQLTSLDVGFNT-ISKLEPE---LCQKLPMLKVLNLQHNE-LSQLS-DKTFAFCTNLTELHLMSNS-IQKIKNNP 116 (680)
T ss_dssp GGGGGTTCSEEECCSSC-CCCCCTT---HHHHCTTCCEEECCSSC-CCCCC-TTTTTTCTTCSEEECCSSC-CCCCCSCT
T ss_pred HHhCCCcCcEEECCCCc-cCccCHH---HHhcccCcCEEECCCCc-cCccC-hhhhccCCCCCEEECCCCc-cCccChhH
Confidence 45666777777777653 2211111 12345777777777653 22111 1122367778888887763 44333345
Q ss_pred HHcCCCCCeEeccCCcccChHhHHHHHhcCCCCcEEeccCCCCCChHHHHHH-HhhCCCccEeeecccCCCCCCcccccc
Q 012207 146 IAEAKNLERLWLARCKLITDLGIGRIAACCRKLKLLCLKWCIRVTDLGVELV-ALKCQEIRTLDLSYLPITEKCLPPVVK 224 (468)
Q Consensus 146 l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~-~~~~~~L~~L~l~~~~~~~~~~~~l~~ 224 (468)
+..+++|++|+++++. +.......+ ..+++|++|+++++. ++......+ ...+++|++|+++++.+.......+..
T Consensus 117 ~~~l~~L~~L~Ls~n~-l~~~~~~~~-~~l~~L~~L~L~~n~-l~~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~ 193 (680)
T 1ziw_A 117 FVKQKNLITLDLSHNG-LSSTKLGTQ-VQLENLQELLLSNNK-IQALKSEELDIFANSSLKKLELSSNQIKEFSPGCFHA 193 (680)
T ss_dssp TTTCTTCCEEECCSSC-CSCCCCCSS-SCCTTCCEEECCSSC-CCCBCHHHHGGGTTCEESEEECTTCCCCCBCTTGGGG
T ss_pred ccccCCCCEEECCCCc-ccccCchhh-cccccCCEEEccCCc-ccccCHHHhhccccccccEEECCCCcccccChhhhhh
Confidence 6677788888887754 222111111 237788888887753 332222222 124578888888888776655566667
Q ss_pred CCCCCeeeecCCCCCChHHHHHHHh--cCCCCCEEEccCCcccChhhHHHHHhcC--CccceEeecCCCCCchhHHHHhh
Q 012207 225 LQYLEDLVLEGCHGIDDDGLASVEY--SCKSLKALNLSKCQNISHVGLSSLIKGA--DYLQQLILAYSFWVSADLSKCLH 300 (468)
Q Consensus 225 ~~~L~~L~l~~~~~~~~~~~~~l~~--~~~~L~~L~l~~~~~~~~~~~~~~~~~~--~~L~~L~l~~~~~~~~~~~~~l~ 300 (468)
+++|+.+.+.++ .+.......+.. ..++|+.|+++++...... ...+..+ ++|+.|+++++ .+....+..+.
T Consensus 194 l~~L~~L~l~~~-~l~~~~~~~~~~~l~~~~L~~L~L~~n~l~~~~--~~~~~~l~~~~L~~L~Ls~n-~l~~~~~~~~~ 269 (680)
T 1ziw_A 194 IGRLFGLFLNNV-QLGPSLTEKLCLELANTSIRNLSLSNSQLSTTS--NTTFLGLKWTNLTMLDLSYN-NLNVVGNDSFA 269 (680)
T ss_dssp SSEECEEECTTC-CCHHHHHHHHHHHHTTSCCCEEECTTSCCCEEC--TTTTGGGGGSCCCEEECTTS-CCCEECTTTTT
T ss_pred hhhhhhhhcccc-ccChhhHHHHHHHhhhccccEEEccCCcccccC--hhHhhccCcCCCCEEECCCC-CcCccCccccc
Confidence 777777777763 333333222221 2477888888876522111 0112222 34888888877 34444445567
Q ss_pred cCCCCCeeEecCCcCChhHHHHHHHhCCCCCeEecccCCCCCHH---HHHH----HHHhCCCCCeEecCCCCCCCHHHHH
Q 012207 301 NFPMLQSIKFEDCPVARSGIKAIGNWHGSLKELSLSKCSGVTDE---ELSF----VVQSHKELRKLDITCCRKITYASIN 373 (468)
Q Consensus 301 ~~~~L~~L~l~~~~~~~~~~~~l~~~~~~L~~L~l~~~~~~~~~---~l~~----~~~~~~~L~~L~l~~~~~~~~~~~~ 373 (468)
.+++|++|++++|.+.......+. .+++|+.|+++++...... .++. .+..+++|++|++++|. ++... .
T Consensus 270 ~l~~L~~L~L~~n~l~~~~~~~~~-~l~~L~~L~L~~~~~~~~~~~~~lp~i~~~~~~~l~~L~~L~l~~n~-l~~~~-~ 346 (680)
T 1ziw_A 270 WLPQLEYFFLEYNNIQHLFSHSLH-GLFNVRYLNLKRSFTKQSISLASLPKIDDFSFQWLKCLEHLNMEDND-IPGIK-S 346 (680)
T ss_dssp TCTTCCEEECCSCCBSEECTTTTT-TCTTCCEEECTTCBCCC------CCEECTTTTTTCTTCCEEECCSCC-BCCCC-T
T ss_pred CcccccEeeCCCCccCccChhhhc-CCCCccEEeccchhhhcccccccccccChhhcccCCCCCEEECCCCc-cCCCC-h
Confidence 788888888888876654433333 5677777777653211100 0110 23356677777777664 22211 1
Q ss_pred HHHhcCCcCCeEEccCC
Q 012207 374 SITKTCTSLTSLRMECC 390 (468)
Q Consensus 374 ~~~~~~~~L~~L~l~~~ 390 (468)
.....+++|++|++++|
T Consensus 347 ~~~~~l~~L~~L~Ls~n 363 (680)
T 1ziw_A 347 NMFTGLINLKYLSLSNS 363 (680)
T ss_dssp TTTTTCTTCCEEECTTC
T ss_pred hHhccccCCcEEECCCC
Confidence 11235667777777654
|
| >3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A* | Back alignment and structure |
|---|
Probab=99.89 E-value=4.1e-26 Score=223.93 Aligned_cols=158 Identities=18% Similarity=0.131 Sum_probs=80.1
Q ss_pred cCCCCCeeEecCCcCChhH--HHHHHHhCCCCCeEecccCCCCCHHHHHHHHHhCCCCCeEecCCCCCCCHHHHHHHHhc
Q 012207 301 NFPMLQSIKFEDCPVARSG--IKAIGNWHGSLKELSLSKCSGVTDEELSFVVQSHKELRKLDITCCRKITYASINSITKT 378 (468)
Q Consensus 301 ~~~~L~~L~l~~~~~~~~~--~~~l~~~~~~L~~L~l~~~~~~~~~~l~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~ 378 (468)
.+++|++|++++|.+.... ...+. .+++|++|+++++. +.. ++..+..+++|+.|++++|.... .........
T Consensus 348 ~l~~L~~L~ls~n~l~~~~~~~~~~~-~~~~L~~L~L~~n~-l~~--~~~~~~~l~~L~~L~l~~n~l~~-~~~~~~~~~ 422 (606)
T 3vq2_A 348 ALPSLSYLDLSRNALSFSGCCSYSDL-GTNSLRHLDLSFNG-AII--MSANFMGLEELQHLDFQHSTLKR-VTEFSAFLS 422 (606)
T ss_dssp CCTTCCEEECCSSCEEEEEECCHHHH-CCSCCCEEECCSCS-EEE--ECCCCTTCTTCCEEECTTSEEES-TTTTTTTTT
T ss_pred cCCCCCEEECcCCccCCCcchhhhhc-cCCcccEeECCCCc-ccc--chhhccCCCCCCeeECCCCccCC-ccChhhhhc
Confidence 4444555555544433221 12222 44555555555532 211 11123344566666665554211 111012235
Q ss_pred CCcCCeEEccCCCCCCHHHHHHHHhcCCCCCEEEccCCCCChh-hHHhcccCCCCCEEeeCCCCccCHHHHHHHHhcCcc
Q 012207 379 CTSLTSLRMECCKLVSWEAFVLIGQQCQYLEELDITENEVNDE-GLKSISRCSKLSSLKLGICSNITDEGLKHVGSTCSM 457 (468)
Q Consensus 379 ~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~-~~~~l~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~~ 457 (468)
+++|++|++++|. ++......+. .+++|++|++++|.+++. ....+..+++|+.|++++| .++... ......+++
T Consensus 423 l~~L~~L~l~~n~-l~~~~~~~~~-~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~Ls~n-~l~~~~-~~~~~~l~~ 498 (606)
T 3vq2_A 423 LEKLLYLDISYTN-TKIDFDGIFL-GLTSLNTLKMAGNSFKDNTLSNVFANTTNLTFLDLSKC-QLEQIS-WGVFDTLHR 498 (606)
T ss_dssp CTTCCEEECTTSC-CEECCTTTTT-TCTTCCEEECTTCEEGGGEECSCCTTCTTCCEEECTTS-CCCEEC-TTTTTTCTT
T ss_pred cccCCEEECcCCC-CCccchhhhc-CCCCCCEEECCCCcCCCcchHHhhccCCCCCEEECCCC-cCCccC-hhhhccccc
Confidence 6667777776644 2221111222 567777777777766653 3344566777788888777 666422 222346778
Q ss_pred cCeeecCCCC
Q 012207 458 LKELDLYRFS 467 (468)
Q Consensus 458 L~~L~l~~c~ 467 (468)
|++|++++|+
T Consensus 499 L~~L~Ls~N~ 508 (606)
T 3vq2_A 499 LQLLNMSHNN 508 (606)
T ss_dssp CCEEECCSSC
T ss_pred CCEEECCCCc
Confidence 8888887775
|
| >3v47_A TOLL-like receptor 5B and variable lymphocyte REC chimeric protein; innate immunity, leucine-rich repeat, innate immune receptor system; HET: NAG; 2.47A {Danio rerio} PDB: 3v44_A* | Back alignment and structure |
|---|
Probab=99.89 E-value=9.8e-25 Score=206.46 Aligned_cols=356 Identities=15% Similarity=0.056 Sum_probs=244.2
Q ss_pred ccCCccEEecCCCCcccHHHHHHhhhcCCCCcEEEccCCCccCHHHHHHHHcCCCCCeEeccCCcccChHhHHHHHhcCC
Q 012207 97 WKLTLRSINLSRSRLFTKVGLSSLTVNCRFLTEIDLSNGTEMGDAAAAAIAEAKNLERLWLARCKLITDLGIGRIAACCR 176 (468)
Q Consensus 97 ~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~ 176 (468)
..+++++|+++++. +....... +..+++|++|+++++..........+..+++|++|+++++. +.......+ ..++
T Consensus 28 l~~~l~~L~Ls~n~-i~~~~~~~-~~~l~~L~~L~L~~n~~~~~i~~~~~~~l~~L~~L~Ls~n~-l~~~~~~~~-~~l~ 103 (455)
T 3v47_A 28 LPAHVNYVDLSLNS-IAELNETS-FSRLQDLQFLKVEQQTPGLVIRNNTFRGLSSLIILKLDYNQ-FLQLETGAF-NGLA 103 (455)
T ss_dssp CCTTCCEEECCSSC-CCEECTTT-TSSCTTCCEEECCCCSTTCEECTTTTTTCTTCCEEECTTCT-TCEECTTTT-TTCT
T ss_pred CCCccCEEEecCCc-cCcCChhH-hccCccccEEECcCCcccceECcccccccccCCEEeCCCCc-cCccChhhc-cCcc
Confidence 34889999999864 33322223 34899999999999854334334567889999999999875 333222222 3389
Q ss_pred CCcEEeccCCCCCChHHH-HHHHhhCCCccEeeecccCCCCCCccc-cccCCCCCeeeecCCCCCChHHHHHHHh-cCCC
Q 012207 177 KLKLLCLKWCIRVTDLGV-ELVALKCQEIRTLDLSYLPITEKCLPP-VVKLQYLEDLVLEGCHGIDDDGLASVEY-SCKS 253 (468)
Q Consensus 177 ~L~~L~l~~~~~~~~~~~-~~~~~~~~~L~~L~l~~~~~~~~~~~~-l~~~~~L~~L~l~~~~~~~~~~~~~l~~-~~~~ 253 (468)
+|++|+++++. ++...+ ......+++|++|++++|.+....... +.++++|++|+++++. +.......+.. ..++
T Consensus 104 ~L~~L~L~~n~-l~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~l~~L~~L~L~~n~-l~~~~~~~l~~l~~~~ 181 (455)
T 3v47_A 104 NLEVLTLTQCN-LDGAVLSGNFFKPLTSLEMLVLRDNNIKKIQPASFFLNMRRFHVLDLTFNK-VKSICEEDLLNFQGKH 181 (455)
T ss_dssp TCCEEECTTSC-CBTHHHHSSTTTTCTTCCEEECCSSBCCSCCCCGGGGGCTTCCEEECTTCC-BSCCCTTTSGGGTTCE
T ss_pred cCCEEeCCCCC-CCccccCcccccCcccCCEEECCCCccCccCcccccCCCCcccEEeCCCCc-ccccChhhhhcccccc
Confidence 99999999974 443322 223457899999999999887665555 7789999999999853 43322222222 1378
Q ss_pred CCEEEccCCcccChhh--H--H--HHHhcCCccceEeecCCCCCchhHHHHhhc---CCCCCeeEecCCcCChhHH----
Q 012207 254 LKALNLSKCQNISHVG--L--S--SLIKGADYLQQLILAYSFWVSADLSKCLHN---FPMLQSIKFEDCPVARSGI---- 320 (468)
Q Consensus 254 L~~L~l~~~~~~~~~~--~--~--~~~~~~~~L~~L~l~~~~~~~~~~~~~l~~---~~~L~~L~l~~~~~~~~~~---- 320 (468)
|+.|+++++....... + . ......++|+.|+++++ .+....+..+.. .++|+.|.+.++......+
T Consensus 182 L~~L~l~~n~l~~~~~~~~~~~~~~~~~~~~~L~~L~Ls~n-~l~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~ 260 (455)
T 3v47_A 182 FTLLRLSSITLQDMNEYWLGWEKCGNPFKNTSITTLDLSGN-GFKESMAKRFFDAIAGTKIQSLILSNSYNMGSSFGHTN 260 (455)
T ss_dssp EEEEECTTCBCTTCSTTCTTHHHHCCTTTTCEEEEEECTTS-CCCHHHHHHHHHHTTTCCEEEEECTTCTTTSCCTTCCS
T ss_pred ccccccccCcccccchhhccccccccccccceeeeEecCCC-cccccchhhhhccccccceeeEeeccccccccccchhh
Confidence 9999999876322110 0 0 01224578999999998 455555555543 4899999999874332110
Q ss_pred ------HHHH-HhCCCCCeEecccCCCCCHHHHHHHHHhCCCCCeEecCCCCCCCHHHHHHHHhcCCcCCeEEccCCCCC
Q 012207 321 ------KAIG-NWHGSLKELSLSKCSGVTDEELSFVVQSHKELRKLDITCCRKITYASINSITKTCTSLTSLRMECCKLV 393 (468)
Q Consensus 321 ------~~l~-~~~~~L~~L~l~~~~~~~~~~l~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~ 393 (468)
..+. ...++|++|+++++ .++.. .+..+..+++|+.|++++|. ++.... .....+++|++|++++|. +
T Consensus 261 ~~~~~~~~~~~~~~~~L~~L~l~~n-~l~~~-~~~~~~~l~~L~~L~Ls~n~-l~~~~~-~~~~~l~~L~~L~Ls~N~-l 335 (455)
T 3v47_A 261 FKDPDNFTFKGLEASGVKTCDLSKS-KIFAL-LKSVFSHFTDLEQLTLAQNE-INKIDD-NAFWGLTHLLKLNLSQNF-L 335 (455)
T ss_dssp SCCCCTTTTGGGTTSCCCEEECCSS-CCCEE-CTTTTTTCTTCCEEECTTSC-CCEECT-TTTTTCTTCCEEECCSSC-C
T ss_pred hccCcccccccccccCceEEEecCc-ccccc-chhhcccCCCCCEEECCCCc-ccccCh-hHhcCcccCCEEECCCCc-c
Confidence 0000 02478999999985 44432 23345678999999999986 443221 123468999999999964 5
Q ss_pred CHHHHHHHHhcCCCCCEEEccCCCCChhhHHhcccCCCCCEEeeCCCCccCHHHHHHHHhcCcccCeeecCCCC
Q 012207 394 SWEAFVLIGQQCQYLEELDITENEVNDEGLKSISRCSKLSSLKLGICSNITDEGLKHVGSTCSMLKELDLYRFS 467 (468)
Q Consensus 394 ~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~~L~~L~l~~c~ 467 (468)
+......+. .+++|++|++++|.+++.....+..+++|+.|++++| +++.... .....+++|+.|++++|+
T Consensus 336 ~~~~~~~~~-~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N-~l~~~~~-~~~~~l~~L~~L~l~~N~ 406 (455)
T 3v47_A 336 GSIDSRMFE-NLDKLEVLDLSYNHIRALGDQSFLGLPNLKELALDTN-QLKSVPD-GIFDRLTSLQKIWLHTNP 406 (455)
T ss_dssp CEECGGGGT-TCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSS-CCSCCCT-TTTTTCTTCCEEECCSSC
T ss_pred CCcChhHhc-CcccCCEEECCCCcccccChhhccccccccEEECCCC-ccccCCH-hHhccCCcccEEEccCCC
Confidence 443333333 7899999999999999887788889999999999999 8875222 234589999999999986
|
| >2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A* | Back alignment and structure |
|---|
Probab=99.89 E-value=2.2e-23 Score=202.13 Aligned_cols=183 Identities=19% Similarity=0.194 Sum_probs=127.3
Q ss_pred ccCCccEEecCCCCcccHHHHHHhhhcCCCCcEEEccCCCccCHHHHHHHHcCCCCCeEeccCCcccChHhHHHHHhcCC
Q 012207 97 WKLTLRSINLSRSRLFTKVGLSSLTVNCRFLTEIDLSNGTEMGDAAAAAIAEAKNLERLWLARCKLITDLGIGRIAACCR 176 (468)
Q Consensus 97 ~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~ 176 (468)
..+++++|+++++. +.......+ ..+++|++|+++++ .+......++..+++|++|+++++. +.......+. .++
T Consensus 24 ~~~~L~~L~Ls~n~-l~~~~~~~~-~~l~~L~~L~Ls~n-~i~~~~~~~~~~l~~L~~L~Ls~n~-l~~~~~~~~~-~l~ 98 (549)
T 2z81_A 24 LTAAMKSLDLSFNK-ITYIGHGDL-RACANLQVLILKSS-RINTIEGDAFYSLGSLEHLDLSDNH-LSSLSSSWFG-PLS 98 (549)
T ss_dssp CCTTCCEEECCSSC-CCEECSSTT-SSCTTCCEEECTTS-CCCEECTTTTTTCTTCCEEECTTSC-CCSCCHHHHT-TCT
T ss_pred CCCCccEEECcCCc-cCccChhhh-hcCCcccEEECCCC-CcCccChhhccccccCCEEECCCCc-cCccCHHHhc-cCC
Confidence 34789999999875 333222233 48999999999998 4555554678889999999999975 4443333343 499
Q ss_pred CCcEEeccCCCCCChHHHHHHHhhCCCccEeeecccC-CCCCCccccccCCCCCeeeecCCCCCChHHHHHHHhcCCCCC
Q 012207 177 KLKLLCLKWCIRVTDLGVELVALKCQEIRTLDLSYLP-ITEKCLPPVVKLQYLEDLVLEGCHGIDDDGLASVEYSCKSLK 255 (468)
Q Consensus 177 ~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~-~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~~L~ 255 (468)
+|++|+++++. ++..+.......+++|++|+++++. +.......+.++++|++|+++++ .+.......+.. +++|+
T Consensus 99 ~L~~L~Ls~n~-l~~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~~~~~l~~L~~L~L~~n-~l~~~~~~~l~~-l~~L~ 175 (549)
T 2z81_A 99 SLKYLNLMGNP-YQTLGVTSLFPNLTNLQTLRIGNVETFSEIRRIDFAGLTSLNELEIKAL-SLRNYQSQSLKS-IRDIH 175 (549)
T ss_dssp TCCEEECTTCC-CSSSCSSCSCTTCTTCCEEEEEESSSCCEECTTTTTTCCEEEEEEEEET-TCCEECTTTTTT-CSEEE
T ss_pred CCcEEECCCCc-ccccchhhhhhccCCccEEECCCCccccccCHhhhhcccccCeeeccCC-cccccChhhhhc-cccCc
Confidence 99999999874 4322222234578999999999986 43333346778999999999985 454433344554 88999
Q ss_pred EEEccCCcccChhhHHHHHhcCCccceEeecCCC
Q 012207 256 ALNLSKCQNISHVGLSSLIKGADYLQQLILAYSF 289 (468)
Q Consensus 256 ~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~ 289 (468)
+|++..+..... ...+...+++|+.|+++++.
T Consensus 176 ~L~l~~n~~~~~--~~~~~~~l~~L~~L~L~~n~ 207 (549)
T 2z81_A 176 HLTLHLSESAFL--LEIFADILSSVRYLELRDTN 207 (549)
T ss_dssp EEEEECSBSTTH--HHHHHHSTTTBSEEEEESCB
T ss_pred eEecccCccccc--chhhHhhcccccEEEccCCc
Confidence 999998763221 12334567888888887763
|
| >4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron} | Back alignment and structure |
|---|
Probab=99.89 E-value=1.8e-24 Score=215.53 Aligned_cols=345 Identities=15% Similarity=0.135 Sum_probs=219.7
Q ss_pred cccCCccEEecCCCCcccHH----------------HHHHhhh--cCCCCcEEEccCCCccCHHHHHHHHcCCCCCeEec
Q 012207 96 SWKLTLRSINLSRSRLFTKV----------------GLSSLTV--NCRFLTEIDLSNGTEMGDAAAAAIAEAKNLERLWL 157 (468)
Q Consensus 96 ~~~~~L~~L~l~~~~~~~~~----------------~~~~~~~--~~~~L~~L~l~~~~~~~~~~~~~l~~~~~L~~L~l 157 (468)
..+++|++|+++++. +... .++.-.. .+++|+.|++++|...+..+ ..+..+++|++|++
T Consensus 445 ~~L~~L~~L~Ls~N~-Lsg~~i~~~~~~~s~n~~~g~iP~~l~f~~L~~L~~L~Ls~N~l~~~iP-~~l~~L~~L~~L~L 522 (876)
T 4ecn_A 445 QRLTKLQIIYFANSP-FTYDNIAVDWEDANSDYAKQYENEELSWSNLKDLTDVELYNCPNMTQLP-DFLYDLPELQSLNI 522 (876)
T ss_dssp GGCTTCCEEEEESCC-CCGGGBSSSCSCTTSHHHHHHTTSCCCGGGCTTCCEEEEESCTTCCSCC-GGGGGCSSCCEEEC
T ss_pred hcCCCCCEEECcCCc-CCCCcccccccccccccccccCChhhhhccCCCCCEEECcCCCCCccCh-HHHhCCCCCCEEEC
Confidence 456788888888765 3331 1333322 68888899888875444333 56778888999998
Q ss_pred cCCcccCh-H---hHHHHH---hcCCCCcEEeccCCCCCChHHHHHHHhhCCCccEeeecccCCCCCCccccccCCCCCe
Q 012207 158 ARCKLITD-L---GIGRIA---ACCRKLKLLCLKWCIRVTDLGVELVALKCQEIRTLDLSYLPITEKCLPPVVKLQYLED 230 (468)
Q Consensus 158 ~~~~~~~~-~---~~~~~~---~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~ 230 (468)
+++..++. . .+..+. ..+++|+.|+++++. ++..+....+..+++|+.|++++|.+. .++.+..+++|+.
T Consensus 523 s~N~~lsg~~iP~~i~~L~~~~~~l~~L~~L~Ls~N~-L~~ip~~~~l~~L~~L~~L~Ls~N~l~--~lp~~~~L~~L~~ 599 (876)
T 4ecn_A 523 ACNRGISAAQLKADWTRLADDEDTGPKIQIFYMGYNN-LEEFPASASLQKMVKLGLLDCVHNKVR--HLEAFGTNVKLTD 599 (876)
T ss_dssp TTCTTSCHHHHHHHHHHHHHCTTTTTTCCEEECCSSC-CCBCCCHHHHTTCTTCCEEECTTSCCC--BCCCCCTTSEESE
T ss_pred cCCCCcccccchHHHHhhhhcccccCCccEEEeeCCc-CCccCChhhhhcCCCCCEEECCCCCcc--cchhhcCCCcceE
Confidence 88753443 1 122222 235688899888863 443221114457888999999888776 3337778888999
Q ss_pred eeecCCCCCChHHHHHHHhcCCC-CCEEEccCCcccChhhHHHHHhcC--CccceEeecCCCCCchhHH---HHhh--cC
Q 012207 231 LVLEGCHGIDDDGLASVEYSCKS-LKALNLSKCQNISHVGLSSLIKGA--DYLQQLILAYSFWVSADLS---KCLH--NF 302 (468)
Q Consensus 231 L~l~~~~~~~~~~~~~l~~~~~~-L~~L~l~~~~~~~~~~~~~~~~~~--~~L~~L~l~~~~~~~~~~~---~~l~--~~ 302 (468)
|+++++. +.. ....+.. +++ |+.|+++++... . +...+... ++|+.|+++++.. ....+ ..+. .+
T Consensus 600 L~Ls~N~-l~~-lp~~l~~-l~~~L~~L~Ls~N~L~-~--lp~~~~~~~~~~L~~L~Ls~N~l-~g~ip~l~~~l~~~~~ 672 (876)
T 4ecn_A 600 LKLDYNQ-IEE-IPEDFCA-FTDQVEGLGFSHNKLK-Y--IPNIFNAKSVYVMGSVDFSYNKI-GSEGRNISCSMDDYKG 672 (876)
T ss_dssp EECCSSC-CSC-CCTTSCE-ECTTCCEEECCSSCCC-S--CCSCCCTTCSSCEEEEECCSSCT-TTTSSSCSSCTTTCCC
T ss_pred EECcCCc-ccc-chHHHhh-ccccCCEEECcCCCCC-c--CchhhhccccCCCCEEECcCCcC-CCccccchhhhccccC
Confidence 9988843 442 1122333 677 999999887632 1 11222222 3488888888743 22211 1122 33
Q ss_pred CCCCeeEecCCcCChhHHHHHHHhCCCCCeEecccCCCCCHHHHHHHH--------HhCCCCCeEecCCCCCCCHHHHHH
Q 012207 303 PMLQSIKFEDCPVARSGIKAIGNWHGSLKELSLSKCSGVTDEELSFVV--------QSHKELRKLDITCCRKITYASINS 374 (468)
Q Consensus 303 ~~L~~L~l~~~~~~~~~~~~l~~~~~~L~~L~l~~~~~~~~~~l~~~~--------~~~~~L~~L~l~~~~~~~~~~~~~ 374 (468)
++|+.|++++|.+.. .+..+...+++|+.|+++++ .++. ++... .++++|+.|++++|. ++ .+..
T Consensus 673 ~~L~~L~Ls~N~L~~-lp~~~~~~l~~L~~L~Ls~N-~L~~--ip~~~~~~~~~~l~nl~~L~~L~Ls~N~-L~--~lp~ 745 (876)
T 4ecn_A 673 INASTVTLSYNEIQK-FPTELFATGSPISTIILSNN-LMTS--IPENSLKPKDGNYKNTYLLTTIDLRFNK-LT--SLSD 745 (876)
T ss_dssp CCEEEEECCSSCCCS-CCHHHHHTTCCCSEEECCSC-CCSC--CCTTSSSCTTSCCTTGGGCCEEECCSSC-CC--CCCG
T ss_pred CCcCEEEccCCcCCc-cCHHHHccCCCCCEEECCCC-cCCc--cChHHhccccccccccCCccEEECCCCC-Cc--cchH
Confidence 489999999998873 33444446789999999885 4441 22211 122389999999885 44 2223
Q ss_pred HHh--cCCcCCeEEccCCCCCCHHHHHHHHhcCCCCCEEEccC------CCCChhhHHhcccCCCCCEEeeCCCCccCHH
Q 012207 375 ITK--TCTSLTSLRMECCKLVSWEAFVLIGQQCQYLEELDITE------NEVNDEGLKSISRCSKLSSLKLGICSNITDE 446 (468)
Q Consensus 375 ~~~--~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~------~~~~~~~~~~l~~~~~L~~L~l~~~~~l~~~ 446 (468)
... .+++|+.|++++|. ++. ++.....+++|+.|++++ |.+....+..+..+++|+.|++++| .++.
T Consensus 746 ~l~~~~l~~L~~L~Ls~N~-L~~--lp~~l~~L~~L~~L~Ls~N~~ls~N~l~~~ip~~l~~L~~L~~L~Ls~N-~L~~- 820 (876)
T 4ecn_A 746 DFRATTLPYLSNMDVSYNC-FSS--FPTQPLNSSQLKAFGIRHQRDAEGNRILRQWPTGITTCPSLIQLQIGSN-DIRK- 820 (876)
T ss_dssp GGSTTTCTTCCEEECCSSC-CSS--CCCGGGGCTTCCEEECCCCBCTTCCBCCCCCCTTGGGCSSCCEEECCSS-CCCB-
T ss_pred HhhhccCCCcCEEEeCCCC-CCc--cchhhhcCCCCCEEECCCCCCcccccccccChHHHhcCCCCCEEECCCC-CCCc-
Confidence 333 68899999998854 443 222223789999999976 6666666667788999999999999 7653
Q ss_pred HHHHHHhcCcccCeeecCCCC
Q 012207 447 GLKHVGSTCSMLKELDLYRFS 467 (468)
Q Consensus 447 ~~~~~~~~~~~L~~L~l~~c~ 467 (468)
++.. -.++|+.|+|++|+
T Consensus 821 -Ip~~--l~~~L~~LdLs~N~ 838 (876)
T 4ecn_A 821 -VDEK--LTPQLYILDIADNP 838 (876)
T ss_dssp -CCSC--CCSSSCEEECCSCT
T ss_pred -cCHh--hcCCCCEEECCCCC
Confidence 3322 24789999999986
|
| >3a79_B TLR6, VLRB.59, TOLL-like receptor 6, variable lymphocyte recepto; diacyl lipopeptide, innate immunity, Leu repeat, cell membrane, cytoplasmic vesicle; HET: PXS NAG BMA NDG; 2.90A {Mus musculus} | Back alignment and structure |
|---|
Probab=99.89 E-value=2.4e-24 Score=208.87 Aligned_cols=367 Identities=14% Similarity=0.126 Sum_probs=202.1
Q ss_pred CCCcEEecCCCCCCChhHHHhhhcccccCCccEEecCCCCcccHHHHHHhhhcCCCCcEEEccCCCccCHHHHHHHHcCC
Q 012207 71 PFITQLDLSLCPRANDDALSIVSSSSWKLTLRSINLSRSRLFTKVGLSSLTVNCRFLTEIDLSNGTEMGDAAAAAIAEAK 150 (468)
Q Consensus 71 ~~l~~l~l~~~~~~~~~~~~~l~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~l~~~~ 150 (468)
++++.|+++++. +...... ....+++|++|+++++. +..... ..+..+++|++|+++++. +...+.. .++
T Consensus 52 ~~L~~L~Ls~N~-i~~~~~~---~~~~l~~L~~L~Ls~N~-l~~~~~-~~~~~l~~L~~L~Ls~N~-l~~lp~~---~l~ 121 (562)
T 3a79_B 52 PRTKALSLSQNS-ISELRMP---DISFLSELRVLRLSHNR-IRSLDF-HVFLFNQDLEYLDVSHNR-LQNISCC---PMA 121 (562)
T ss_dssp TTCCEEECCSSC-CCCCCGG---GTTTCTTCCEEECCSCC-CCEECT-TTTTTCTTCCEEECTTSC-CCEECSC---CCT
T ss_pred CCcCEEECCCCC-ccccChh---hhccCCCccEEECCCCC-CCcCCH-HHhCCCCCCCEEECCCCc-CCccCcc---ccc
Confidence 567777777653 2211111 23455777777777653 222211 222367777777777763 4433211 577
Q ss_pred CCCeEeccCCcccChHhHHHHHhcCCCCcEEeccCCCCCChHHHHHHHhhCCCc--cEeeecccCC--CCCCccccc---
Q 012207 151 NLERLWLARCKLITDLGIGRIAACCRKLKLLCLKWCIRVTDLGVELVALKCQEI--RTLDLSYLPI--TEKCLPPVV--- 223 (468)
Q Consensus 151 ~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L--~~L~l~~~~~--~~~~~~~l~--- 223 (468)
+|++|+++++. +...........+++|++|+++++ .++...+ ..+++| +.|+++++.+ .......+.
T Consensus 122 ~L~~L~Ls~N~-l~~l~~p~~~~~l~~L~~L~L~~n-~l~~~~~----~~l~~L~L~~L~L~~n~l~~~~~~~~~l~~l~ 195 (562)
T 3a79_B 122 SLRHLDLSFND-FDVLPVCKEFGNLTKLTFLGLSAA-KFRQLDL----LPVAHLHLSCILLDLVSYHIKGGETESLQIPN 195 (562)
T ss_dssp TCSEEECCSSC-CSBCCCCGGGGGCTTCCEEEEECS-BCCTTTT----GGGTTSCEEEEEEEESSCCCCSSSCCEEEECC
T ss_pred cCCEEECCCCC-ccccCchHhhcccCcccEEecCCC-ccccCch----hhhhhceeeEEEeecccccccccCcccccccC
Confidence 77777777754 332111112223777888877775 3333221 234455 7777777655 332222222
Q ss_pred -----------------------cCCCCCeeeecCCCCCC---hHHHHHHHhcCCCCCEEEccCCcccChhhHHHHH--h
Q 012207 224 -----------------------KLQYLEDLVLEGCHGID---DDGLASVEYSCKSLKALNLSKCQNISHVGLSSLI--K 275 (468)
Q Consensus 224 -----------------------~~~~L~~L~l~~~~~~~---~~~~~~l~~~~~~L~~L~l~~~~~~~~~~~~~~~--~ 275 (468)
.+++|+.++++++.... ......+.. .++|+.+++.++. +....+..+. .
T Consensus 196 ~~~l~l~l~~n~~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~l~~~~~~l~~-l~~L~~L~L~~~~-l~~~~~~~~~~~~ 273 (562)
T 3a79_B 196 TTVLHLVFHPNSLFSVQVNMSVNALGHLQLSNIKLNDENCQRLMTFLSELTR-GPTLLNVTLQHIE-TTWKCSVKLFQFF 273 (562)
T ss_dssp EEEEEEEECSSSCCCCCCEEEESSEEEEEEEEEECCSTTHHHHHHHHHHHHS-CSSCEEEEEEEEE-ECHHHHHHHHHHH
T ss_pred cceEEEEecCccchhhhhhhcccccceEEEecccccccccchHHHHHHHHhc-cCcceEEEecCCc-CcHHHHHHHHHhh
Confidence 24456666666532100 011112222 4555555444332 2221111111 0
Q ss_pred cCCccceEeecCCCCC---ch---------------------------hHHHHh----------------------hcCC
Q 012207 276 GADYLQQLILAYSFWV---SA---------------------------DLSKCL----------------------HNFP 303 (468)
Q Consensus 276 ~~~~L~~L~l~~~~~~---~~---------------------------~~~~~l----------------------~~~~ 303 (468)
..++|++|+++++... .. .....+ ..++
T Consensus 274 ~~~~L~~L~l~~n~l~~~ip~~~~~~~~~~L~~L~~~~~~~~~~~~p~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~l~ 353 (562)
T 3a79_B 274 WPRPVEYLNIYNLTITERIDREEFTYSETALKSLMIEHVKNQVFLFSKEALYSVFAEMNIKMLSISDTPFIHMVCPPSPS 353 (562)
T ss_dssp TTSSEEEEEEEEEEECSCCCCCCCCCCSCSCCEEEEEEEEECCCSSCHHHHHHHHHTCCCSEEEEESSCCCCCCCCSSCC
T ss_pred hcccccEEEEeccEeeccccchhhhcccccchheehhhcccceeecChhhhhhhhccCcceEEEccCCCcccccCccCCC
Confidence 1124444444333100 00 001111 5678
Q ss_pred CCCeeEecCCcCChhHHHHHHHhCCCCCeEecccCCCCCH-HHHHHHHHhCCCCCeEecCCCCCCCHHHHHHHHhcCCcC
Q 012207 304 MLQSIKFEDCPVARSGIKAIGNWHGSLKELSLSKCSGVTD-EELSFVVQSHKELRKLDITCCRKITYASINSITKTCTSL 382 (468)
Q Consensus 304 ~L~~L~l~~~~~~~~~~~~l~~~~~~L~~L~l~~~~~~~~-~~l~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L 382 (468)
+|++|++++|.+.+..+..+. .+++|++|+++++ .++. ..++..+..+++|+.|++++|. ++..........+++|
T Consensus 354 ~L~~L~l~~n~l~~~~~~~~~-~l~~L~~L~L~~N-~l~~~~~~~~~~~~l~~L~~L~l~~N~-l~~~~~~~~~~~l~~L 430 (562)
T 3a79_B 354 SFTFLNFTQNVFTDSVFQGCS-TLKRLQTLILQRN-GLKNFFKVALMTKNMSSLETLDVSLNS-LNSHAYDRTCAWAESI 430 (562)
T ss_dssp CCCEEECCSSCCCTTTTTTCC-SCSSCCEEECCSS-CCCBTTHHHHTTTTCTTCCEEECTTSC-CBSCCSSCCCCCCTTC
T ss_pred CceEEECCCCccccchhhhhc-ccCCCCEEECCCC-CcCCcccchhhhcCCCCCCEEECCCCc-CCCccChhhhcCcccC
Confidence 888888888887765444443 6788899999884 4543 1234445677889999998876 3221011122357889
Q ss_pred CeEEccCCCCCCHHHHHHHHhcC-CCCCEEEccCCCCChhhHHhcccCCCCCEEeeCCCCccCHHHHHH-HHhcCcccCe
Q 012207 383 TSLRMECCKLVSWEAFVLIGQQC-QYLEELDITENEVNDEGLKSISRCSKLSSLKLGICSNITDEGLKH-VGSTCSMLKE 460 (468)
Q Consensus 383 ~~L~l~~~~~~~~~~~~~~~~~~-~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~l~~~~~~~-~~~~~~~L~~ 460 (468)
++|++++|. ++.... ..+ ++|+.|++++|.++... ..+..+++|+.|++++| +++. ++. ....+++|+.
T Consensus 431 ~~L~l~~n~-l~~~~~----~~l~~~L~~L~L~~N~l~~ip-~~~~~l~~L~~L~L~~N-~l~~--l~~~~~~~l~~L~~ 501 (562)
T 3a79_B 431 LVLNLSSNM-LTGSVF----RCLPPKVKVLDLHNNRIMSIP-KDVTHLQALQELNVASN-QLKS--VPDGVFDRLTSLQY 501 (562)
T ss_dssp CEEECCSSC-CCGGGG----SSCCTTCSEEECCSSCCCCCC-TTTTSSCCCSEEECCSS-CCCC--CCTTSTTTCTTCCC
T ss_pred CEEECCCCC-CCcchh----hhhcCcCCEEECCCCcCcccC-hhhcCCCCCCEEECCCC-CCCC--CCHHHHhcCCCCCE
Confidence 999998854 553322 234 68999999999888543 33447889999999999 8874 333 2457899999
Q ss_pred eecCCCC
Q 012207 461 LDLYRFS 467 (468)
Q Consensus 461 L~l~~c~ 467 (468)
|++++|+
T Consensus 502 L~l~~N~ 508 (562)
T 3a79_B 502 IWLHDNP 508 (562)
T ss_dssp EECCSCC
T ss_pred EEecCCC
Confidence 9999986
|
| >4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697} | Back alignment and structure |
|---|
Probab=99.88 E-value=8.3e-25 Score=214.31 Aligned_cols=327 Identities=13% Similarity=0.087 Sum_probs=225.4
Q ss_pred HhhhcCCCCcEEEccCCCccCHH-----------------HHHHHH--cCCCCCeEeccCCcccChHhHHHHHhcCCCCc
Q 012207 119 SLTVNCRFLTEIDLSNGTEMGDA-----------------AAAAIA--EAKNLERLWLARCKLITDLGIGRIAACCRKLK 179 (468)
Q Consensus 119 ~~~~~~~~L~~L~l~~~~~~~~~-----------------~~~~l~--~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~ 179 (468)
.....+++|++|+++++. +... ....+. ++++|++|+++++....... .. ...+++|+
T Consensus 200 ~~l~~l~~L~~L~Ls~n~-l~~~~~~~~~~~~~~~~~~~~ip~~l~~~~l~~L~~L~L~~n~l~~~~p-~~-l~~l~~L~ 276 (636)
T 4eco_A 200 KAVMRLTKLRQFYMGNSP-FVAENICEAWENENSEYAQQYKTEDLKWDNLKDLTDVEVYNCPNLTKLP-TF-LKALPEMQ 276 (636)
T ss_dssp GGGGGCTTCCEEEEESCC-CCGGGBSSSCSCTTSHHHHHHTTSCCCGGGCTTCCEEEEECCTTCSSCC-TT-TTTCSSCC
T ss_pred HHHhcccCCCEEECcCCc-cccccccccccccccchhcccCchhhhhcccCCCCEEEecCCcCCccCh-HH-HhcCCCCC
Confidence 334479999999999985 5552 234566 89999999999875333211 22 23489999
Q ss_pred EEeccCCCCCChHHHHHHHh------hCCCccEeeecccCCCCCCcc--ccccCCCCCeeeecCCCCCC-hHHHHHHHhc
Q 012207 180 LLCLKWCIRVTDLGVELVAL------KCQEIRTLDLSYLPITEKCLP--PVVKLQYLEDLVLEGCHGID-DDGLASVEYS 250 (468)
Q Consensus 180 ~L~l~~~~~~~~~~~~~~~~------~~~~L~~L~l~~~~~~~~~~~--~l~~~~~L~~L~l~~~~~~~-~~~~~~l~~~ 250 (468)
+|+++++..++...++.... .+++|++|++++|.+. .... .+.++++|++|+++++. +. ... .+..
T Consensus 277 ~L~Ls~n~~l~~~~lp~~~~~L~~~~~l~~L~~L~L~~n~l~-~ip~~~~l~~l~~L~~L~L~~N~-l~g~ip--~~~~- 351 (636)
T 4eco_A 277 LINVACNRGISGEQLKDDWQALADAPVGEKIQIIYIGYNNLK-TFPVETSLQKMKKLGMLECLYNQ-LEGKLP--AFGS- 351 (636)
T ss_dssp EEECTTCTTSCHHHHHHHHHHHHHSGGGGTCCEEECCSSCCS-SCCCHHHHTTCTTCCEEECCSCC-CEEECC--CCEE-
T ss_pred EEECcCCCCCccccchHHHHhhhccccCCCCCEEECCCCcCC-ccCchhhhccCCCCCEEeCcCCc-Cccchh--hhCC-
Confidence 99999985466522222222 3499999999999888 5555 68899999999999854 44 332 3443
Q ss_pred CCCCCEEEccCCcccChhhHHHHHhcCCc-cceEeecCCCCCchhHHHHhhcC--CCCCeeEecCCcCChhHHHHHHH--
Q 012207 251 CKSLKALNLSKCQNISHVGLSSLIKGADY-LQQLILAYSFWVSADLSKCLHNF--PMLQSIKFEDCPVARSGIKAIGN-- 325 (468)
Q Consensus 251 ~~~L~~L~l~~~~~~~~~~~~~~~~~~~~-L~~L~l~~~~~~~~~~~~~l~~~--~~L~~L~l~~~~~~~~~~~~l~~-- 325 (468)
+++|+.|+++++... .+...+..+++ |+.|+++++. +. .++..+... ++|+.|++++|.+....+..+..
T Consensus 352 l~~L~~L~L~~N~l~---~lp~~l~~l~~~L~~L~Ls~N~-l~-~lp~~~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~~~ 426 (636)
T 4eco_A 352 EIKLASLNLAYNQIT---EIPANFCGFTEQVENLSFAHNK-LK-YIPNIFDAKSVSVMSAIDFSYNEIGSVDGKNFDPLD 426 (636)
T ss_dssp EEEESEEECCSSEEE---ECCTTSEEECTTCCEEECCSSC-CS-SCCSCCCTTCSSCEEEEECCSSCTTTTTTCSSCTTC
T ss_pred CCCCCEEECCCCccc---cccHhhhhhcccCcEEEccCCc-Cc-ccchhhhhcccCccCEEECcCCcCCCcchhhhcccc
Confidence 789999999988633 22223556778 9999999984 33 445455544 48999999999987654433320
Q ss_pred ----hCCCCCeEecccCCCCCHHHHHHHHHhCCCCCeEecCCCCCCCHHHHHHHHhc-------CCcCCeEEccCCCCCC
Q 012207 326 ----WHGSLKELSLSKCSGVTDEELSFVVQSHKELRKLDITCCRKITYASINSITKT-------CTSLTSLRMECCKLVS 394 (468)
Q Consensus 326 ----~~~~L~~L~l~~~~~~~~~~l~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~-------~~~L~~L~l~~~~~~~ 394 (468)
.+++|++|+++++ .++.. -..++..+++|+.|++++|. ++.... ..... +++|+.|++++|. ++
T Consensus 427 ~~~~~~~~L~~L~Ls~N-~l~~l-p~~~~~~l~~L~~L~Ls~N~-l~~i~~-~~~~~~~~~~~~l~~L~~L~Ls~N~-l~ 501 (636)
T 4eco_A 427 PTPFKGINVSSINLSNN-QISKF-PKELFSTGSPLSSINLMGNM-LTEIPK-NSLKDENENFKNTYLLTSIDLRFNK-LT 501 (636)
T ss_dssp SSCCCCCCEEEEECCSS-CCCSC-CTHHHHTTCCCSEEECCSSC-CSBCCS-SSSEETTEECTTGGGCCEEECCSSC-CC
T ss_pred cccccCCCCCEEECcCC-ccCcC-CHHHHccCCCCCEEECCCCC-CCCcCH-HHhccccccccccCCccEEECcCCc-CC
Confidence 3468999999985 45421 12345568999999999986 442111 11111 2299999999965 55
Q ss_pred HHHHHHHH--hcCCCCCEEEccCCCCChhhHHhcccCCCCCEEeeCCCC-----ccCHHHHHHHHhcCcccCeeecCCCC
Q 012207 395 WEAFVLIG--QQCQYLEELDITENEVNDEGLKSISRCSKLSSLKLGICS-----NITDEGLKHVGSTCSMLKELDLYRFS 467 (468)
Q Consensus 395 ~~~~~~~~--~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~-----~l~~~~~~~~~~~~~~L~~L~l~~c~ 467 (468)
.+.... ..+++|+.|++++|.++. .+..+..+++|+.|++++|. ++.. .++.....+++|++|++++|+
T Consensus 502 --~lp~~~~~~~l~~L~~L~Ls~N~l~~-ip~~~~~l~~L~~L~Ls~N~~ls~N~l~~-~~p~~l~~l~~L~~L~Ls~N~ 577 (636)
T 4eco_A 502 --KLSDDFRATTLPYLVGIDLSYNSFSK-FPTQPLNSSTLKGFGIRNQRDAQGNRTLR-EWPEGITLCPSLTQLQIGSND 577 (636)
T ss_dssp --BCCGGGSTTTCTTCCEEECCSSCCSS-CCCGGGGCSSCCEEECCSCBCTTCCBCCC-CCCTTGGGCSSCCEEECCSSC
T ss_pred --ccChhhhhccCCCcCEEECCCCCCCC-cChhhhcCCCCCEEECCCCcccccCcccc-cChHHHhcCCCCCEEECCCCc
Confidence 222222 278999999999999987 44667789999999996542 3332 133334579999999999996
|
| >3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.87 E-value=1e-24 Score=220.86 Aligned_cols=182 Identities=16% Similarity=0.088 Sum_probs=81.7
Q ss_pred CccceEeecCCCCCchhHHHHhhcCCCCCeeEecCCcCChhHHHHHHHhCCCCCeEecccCCCCCHHHHHHHHHhCCCCC
Q 012207 278 DYLQQLILAYSFWVSADLSKCLHNFPMLQSIKFEDCPVARSGIKAIGNWHGSLKELSLSKCSGVTDEELSFVVQSHKELR 357 (468)
Q Consensus 278 ~~L~~L~l~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~l~~~~~~L~~L~l~~~~~~~~~~l~~~~~~~~~L~ 357 (468)
++|+.|+++++ .+....+..+..+++|+.|++.+|.+.......+. .+++|++|+++++ .++.. ....+..+++|+
T Consensus 266 ~~L~~L~Ls~n-~l~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~-~l~~L~~L~Ls~N-~l~~~-~~~~~~~l~~L~ 341 (844)
T 3j0a_A 266 SSVRHLDLSHG-FVFSLNSRVFETLKDLKVLNLAYNKINKIADEAFY-GLDNLQVLNLSYN-LLGEL-YSSNFYGLPKVA 341 (844)
T ss_dssp SCCCEEECTTC-CCCEECSCCSSSCCCCCEEEEESCCCCEECTTTTT-TCSSCCEEEEESC-CCSCC-CSCSCSSCTTCC
T ss_pred CCccEEECCCC-cccccChhhhhcCCCCCEEECCCCcCCCCChHHhc-CCCCCCEEECCCC-CCCcc-CHHHhcCCCCCC
Confidence 44555555554 22222333344555555555555554433222222 4455555555553 22211 011123445555
Q ss_pred eEecCCCCCCCHHHHHHHHhcCCcCCeEEccCCCCCCHHHH--------------HHHHhcCCCCCEEEccCCCCChhh-
Q 012207 358 KLDITCCRKITYASINSITKTCTSLTSLRMECCKLVSWEAF--------------VLIGQQCQYLEELDITENEVNDEG- 422 (468)
Q Consensus 358 ~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~--------------~~~~~~~~~L~~L~l~~~~~~~~~- 422 (468)
.|++++|. +...... ....+++|+.|+++++. ++.... ..+.....+++.|++++|.+++..
T Consensus 342 ~L~L~~N~-i~~~~~~-~~~~l~~L~~L~Ls~N~-l~~i~~~~~L~~L~l~~N~l~~l~~~~~~l~~L~ls~N~l~~l~~ 418 (844)
T 3j0a_A 342 YIDLQKNH-IAIIQDQ-TFKFLEKLQTLDLRDNA-LTTIHFIPSIPDIFLSGNKLVTLPKINLTANLIHLSENRLENLDI 418 (844)
T ss_dssp EEECCSCC-CCCCCSS-CSCSCCCCCEEEEETCC-SCCCSSCCSCSEEEEESCCCCCCCCCCTTCCEEECCSCCCCSSTT
T ss_pred EEECCCCC-CCccChh-hhcCCCCCCEEECCCCC-CCcccCCCCcchhccCCCCcccccccccccceeecccCccccCch
Confidence 55555543 2211100 11234555555555432 221000 001112334555555555554422
Q ss_pred HHhcccCCCCCEEeeCCCCccCHHHHHHHHhcCcccCeeecCCCC
Q 012207 423 LKSISRCSKLSSLKLGICSNITDEGLKHVGSTCSMLKELDLYRFS 467 (468)
Q Consensus 423 ~~~l~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~~L~~L~l~~c~ 467 (468)
...+.++++|+.|++++| +++..........+++|+.|++++|.
T Consensus 419 ~~~~~~l~~L~~L~Ls~N-~l~~~~~~~~~~~~~~L~~L~Ls~N~ 462 (844)
T 3j0a_A 419 LYFLLRVPHLQILILNQN-RFSSCSGDQTPSENPSLEQLFLGENM 462 (844)
T ss_dssp HHHHTTCTTCCEEEEESC-CCCCCCSSSSSCSCTTCCBCEEESCC
T ss_pred hhhhhcCCccceeeCCCC-cccccccccccccCCccccccCCCCc
Confidence 223446777777777777 66532112223346777777777764
|
| >2ca6_A RAN GTPase-activating protein 1; GAP, GTPase activation, hemihedral twinning, leucine-rich repeat protein, LRR, merohedral twinning; 2.2A {Schizosaccharomyces pombe} SCOP: c.10.1.2 PDB: 1k5g_C* 1k5d_C 1yrg_A | Back alignment and structure |
|---|
Probab=99.87 E-value=1.6e-20 Score=173.32 Aligned_cols=265 Identities=16% Similarity=0.189 Sum_probs=145.5
Q ss_pred cCCCCcEEeccCCCCCChHHHHHH---HhhCCCccEeeecccCCCC---CCccccccCCCCCeeeecCCCCCChHHHHHH
Q 012207 174 CCRKLKLLCLKWCIRVTDLGVELV---ALKCQEIRTLDLSYLPITE---KCLPPVVKLQYLEDLVLEGCHGIDDDGLASV 247 (468)
Q Consensus 174 ~~~~L~~L~l~~~~~~~~~~~~~~---~~~~~~L~~L~l~~~~~~~---~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~l 247 (468)
.+++|++|+++++ .++..+...+ ...+++|++|+++++.+.. ..+..+. .....+
T Consensus 30 ~~~~L~~L~L~~n-~i~~~~~~~l~~~l~~~~~L~~L~Ls~~~~~~l~~~~~~~~~------------------~l~~~l 90 (386)
T 2ca6_A 30 EDDSVKEIVLSGN-TIGTEAARWLSENIASKKDLEIAEFSDIFTGRVKDEIPEALR------------------LLLQAL 90 (386)
T ss_dssp HCSCCCEEECTTS-EECHHHHHHHHHTTTTCTTCCEEECCSCCTTSCGGGSHHHHH------------------HHHHHH
T ss_pred cCCCccEEECCCC-CCCHHHHHHHHHHHHhCCCccEEeCcccccCccccchhHHHH------------------HHHHHH
Confidence 3677777777775 4555544333 2356677777776653321 1111110 000011
Q ss_pred HhcCCCCCEEEccCCcccChh---hHHHHHhcCCccceEeecCCCCCchhH----HHHhhcC---------CCCCeeEec
Q 012207 248 EYSCKSLKALNLSKCQNISHV---GLSSLIKGADYLQQLILAYSFWVSADL----SKCLHNF---------PMLQSIKFE 311 (468)
Q Consensus 248 ~~~~~~L~~L~l~~~~~~~~~---~~~~~~~~~~~L~~L~l~~~~~~~~~~----~~~l~~~---------~~L~~L~l~ 311 (468)
. .+++|++|+++++. +... .+...+..+++|++|++++|. +.... ...+..+ ++|++|+++
T Consensus 91 ~-~~~~L~~L~Ls~n~-l~~~~~~~l~~~l~~~~~L~~L~L~~n~-l~~~~~~~l~~~l~~l~~~~~~~~~~~L~~L~L~ 167 (386)
T 2ca6_A 91 L-KCPKLHTVRLSDNA-FGPTAQEPLIDFLSKHTPLEHLYLHNNG-LGPQAGAKIARALQELAVNKKAKNAPPLRSIICG 167 (386)
T ss_dssp T-TCTTCCEEECCSCC-CCTTTHHHHHHHHHHCTTCCEEECCSSC-CHHHHHHHHHHHHHHHHHHHHHHTCCCCCEEECC
T ss_pred h-hCCcccEEECCCCc-CCHHHHHHHHHHHHhCCCCCEEECcCCC-CCHHHHHHHHHHHHHHhhhhhcccCCCCcEEECC
Confidence 1 24455555555443 2221 122233444555555555542 22221 1222233 777777777
Q ss_pred CCcCChhHHHHHH---HhCCCCCeEecccCCCCCHHHHHHHH----HhCCCCCeEecCCCCCCCHHHHH---HHHhcCCc
Q 012207 312 DCPVARSGIKAIG---NWHGSLKELSLSKCSGVTDEELSFVV----QSHKELRKLDITCCRKITYASIN---SITKTCTS 381 (468)
Q Consensus 312 ~~~~~~~~~~~l~---~~~~~L~~L~l~~~~~~~~~~l~~~~----~~~~~L~~L~l~~~~~~~~~~~~---~~~~~~~~ 381 (468)
+|.+++..+..++ ..+++|++|++++| .+++.++..++ ..+++|+.|++++|. +++.+.. .....+++
T Consensus 168 ~n~l~~~~~~~l~~~l~~~~~L~~L~L~~n-~l~~~g~~~l~~~~l~~~~~L~~L~Ls~n~-l~~~g~~~l~~~l~~~~~ 245 (386)
T 2ca6_A 168 RNRLENGSMKEWAKTFQSHRLLHTVKMVQN-GIRPEGIEHLLLEGLAYCQELKVLDLQDNT-FTHLGSSALAIALKSWPN 245 (386)
T ss_dssp SSCCTGGGHHHHHHHHHHCTTCCEEECCSS-CCCHHHHHHHHHTTGGGCTTCCEEECCSSC-CHHHHHHHHHHHGGGCTT
T ss_pred CCCCCcHHHHHHHHHHHhCCCcCEEECcCC-CCCHhHHHHHHHHHhhcCCCccEEECcCCC-CCcHHHHHHHHHHccCCC
Confidence 7777655555332 25677888888774 66666544433 366778888887776 5543332 33346778
Q ss_pred CCeEEccCCCCCCHHHHHHHHh-----cCCCCCEEEccCCCCChhhH----Hhc-ccCCCCCEEeeCCCCccCHHH--HH
Q 012207 382 LTSLRMECCKLVSWEAFVLIGQ-----QCQYLEELDITENEVNDEGL----KSI-SRCSKLSSLKLGICSNITDEG--LK 449 (468)
Q Consensus 382 L~~L~l~~~~~~~~~~~~~~~~-----~~~~L~~L~l~~~~~~~~~~----~~l-~~~~~L~~L~l~~~~~l~~~~--~~ 449 (468)
|++|++++|. +++.+...+.. .+++|+.|++++|.+++.+. ..+ .++++|+.|++++| .++... +.
T Consensus 246 L~~L~L~~n~-i~~~~~~~l~~~l~~~~~~~L~~L~L~~n~i~~~g~~~l~~~l~~~l~~L~~L~l~~N-~l~~~~~~~~ 323 (386)
T 2ca6_A 246 LRELGLNDCL-LSARGAAAVVDAFSKLENIGLQTLRLQYNEIELDAVRTLKTVIDEKMPDLLFLELNGN-RFSEEDDVVD 323 (386)
T ss_dssp CCEEECTTCC-CCHHHHHHHHHHHHTCSSCCCCEEECCSSCCBHHHHHHHHHHHHHHCTTCCEEECTTS-BSCTTSHHHH
T ss_pred cCEEECCCCC-CchhhHHHHHHHHhhccCCCeEEEECcCCcCCHHHHHHHHHHHHhcCCCceEEEccCC-cCCcchhHHH
Confidence 8888887754 66665444332 26778888888888877432 333 34788888888888 776554 45
Q ss_pred HHHhcCcccCeeecC
Q 012207 450 HVGSTCSMLKELDLY 464 (468)
Q Consensus 450 ~~~~~~~~L~~L~l~ 464 (468)
.+...+++++.+++.
T Consensus 324 ~l~~~l~~~~~~~l~ 338 (386)
T 2ca6_A 324 EIREVFSTRGRGELD 338 (386)
T ss_dssp HHHHHHHHHTCCEEC
T ss_pred HHHHHhhhcCcchhh
Confidence 555566666555443
|
| >3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae} | Back alignment and structure |
|---|
Probab=99.87 E-value=3.2e-23 Score=191.64 Aligned_cols=325 Identities=15% Similarity=0.077 Sum_probs=228.7
Q ss_pred ccCCccEEecCCCCcccHHHHHHhhhcCCCCcEEEccCCCccCHHHHHHHHcCCCCCeEeccCCcccChHhHHHHHhcCC
Q 012207 97 WKLTLRSINLSRSRLFTKVGLSSLTVNCRFLTEIDLSNGTEMGDAAAAAIAEAKNLERLWLARCKLITDLGIGRIAACCR 176 (468)
Q Consensus 97 ~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~ 176 (468)
..++++.++++++. +.... ..++..+++|++|+++++ .+.......+..+++|++|+++++. +.......+ ..++
T Consensus 43 ~l~~l~~l~l~~~~-l~~l~-~~~~~~l~~L~~L~L~~n-~i~~~~~~~~~~l~~L~~L~L~~n~-l~~~~~~~~-~~l~ 117 (390)
T 3o6n_A 43 TLNNQKIVTFKNST-MRKLP-AALLDSFRQVELLNLNDL-QIEEIDTYAFAYAHTIQKLYMGFNA-IRYLPPHVF-QNVP 117 (390)
T ss_dssp GGCCCSEEEEESCE-ESEEC-THHHHHCCCCSEEECTTS-CCCEECTTTTTTCTTCCEEECCSSC-CCCCCTTTT-TTCT
T ss_pred ccCCceEEEecCCc-hhhCC-hhHhcccccCcEEECCCC-cccccChhhccCCCCcCEEECCCCC-CCcCCHHHh-cCCC
Confidence 46889999998764 22211 233447899999999988 4665554578889999999999865 333222222 3489
Q ss_pred CCcEEeccCCCCCChHHHHHHHhhCCCccEeeecccCCCCCCccccccCCCCCeeeecCCCCCChHHHHHHHhcCCCCCE
Q 012207 177 KLKLLCLKWCIRVTDLGVELVALKCQEIRTLDLSYLPITEKCLPPVVKLQYLEDLVLEGCHGIDDDGLASVEYSCKSLKA 256 (468)
Q Consensus 177 ~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~~L~~ 256 (468)
+|++|+++++ .++..+. .+...+++|++|+++++.+.......+..+++|++|+++++ .+.... +. .+++|+.
T Consensus 118 ~L~~L~L~~n-~l~~l~~-~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n-~l~~~~---~~-~l~~L~~ 190 (390)
T 3o6n_A 118 LLTVLVLERN-DLSSLPR-GIFHNTPKLTTLSMSNNNLERIEDDTFQATTSLQNLQLSSN-RLTHVD---LS-LIPSLFH 190 (390)
T ss_dssp TCCEEECCSS-CCCCCCT-TTTTTCTTCCEEECCSSCCCBCCTTTTSSCTTCCEEECCSS-CCSBCC---GG-GCTTCSE
T ss_pred CCCEEECCCC-ccCcCCH-HHhcCCCCCcEEECCCCccCccChhhccCCCCCCEEECCCC-cCCccc---cc-cccccce
Confidence 9999999987 3443221 12347899999999999887766667888999999999985 444432 23 3899999
Q ss_pred EEccCCcccChhhHHHHHhcCCccceEeecCCCCCchhHHHHhhcCCCCCeeEecCCcCChhHHHHHHHhCCCCCeEecc
Q 012207 257 LNLSKCQNISHVGLSSLIKGADYLQQLILAYSFWVSADLSKCLHNFPMLQSIKFEDCPVARSGIKAIGNWHGSLKELSLS 336 (468)
Q Consensus 257 L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~l~~~~~~L~~L~l~ 336 (468)
|+++++.. .. +...++|+.|+++++.... . + ....++|+.|++++|.+.+.. .+ ..+++|++|+++
T Consensus 191 L~l~~n~l-~~------~~~~~~L~~L~l~~n~l~~-~-~--~~~~~~L~~L~l~~n~l~~~~--~l-~~l~~L~~L~Ls 256 (390)
T 3o6n_A 191 ANVSYNLL-ST------LAIPIAVEELDASHNSINV-V-R--GPVNVELTILKLQHNNLTDTA--WL-LNYPGLVEVDLS 256 (390)
T ss_dssp EECCSSCC-SE------EECCSSCSEEECCSSCCCE-E-E--CCCCSSCCEEECCSSCCCCCG--GG-GGCTTCSEEECC
T ss_pred eecccccc-cc------cCCCCcceEEECCCCeeee-c-c--ccccccccEEECCCCCCcccH--HH-cCCCCccEEECC
Confidence 99998753 22 2345689999999874322 1 1 123579999999999987652 23 378999999999
Q ss_pred cCCCCCHHHHHHHHHhCCCCCeEecCCCCCCCHHHHHHHHhcCCcCCeEEccCCCCCCHHHHHHHHhcCCCCCEEEccCC
Q 012207 337 KCSGVTDEELSFVVQSHKELRKLDITCCRKITYASINSITKTCTSLTSLRMECCKLVSWEAFVLIGQQCQYLEELDITEN 416 (468)
Q Consensus 337 ~~~~~~~~~l~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~ 416 (468)
++ .++.. .+..+..+++|++|++++|. ++.. ......+++|++|++++|. ++... ..+. .+++|+.|++++|
T Consensus 257 ~n-~l~~~-~~~~~~~l~~L~~L~L~~n~-l~~~--~~~~~~l~~L~~L~L~~n~-l~~~~-~~~~-~l~~L~~L~L~~N 328 (390)
T 3o6n_A 257 YN-ELEKI-MYHPFVKMQRLERLYISNNR-LVAL--NLYGQPIPTLKVLDLSHNH-LLHVE-RNQP-QFDRLENLYLDHN 328 (390)
T ss_dssp SS-CCCEE-ESGGGTTCSSCCEEECCSSC-CCEE--ECSSSCCTTCCEEECCSSC-CCCCG-GGHH-HHTTCSEEECCSS
T ss_pred CC-cCCCc-ChhHccccccCCEEECCCCc-Cccc--CcccCCCCCCCEEECCCCc-ceecC-cccc-ccCcCCEEECCCC
Confidence 85 45432 13335678999999999886 4322 1122468999999999965 44211 1122 6789999999999
Q ss_pred CCChhhHHhcccCCCCCEEeeCCCCccCHHHHHHHHhcCcccC
Q 012207 417 EVNDEGLKSISRCSKLSSLKLGICSNITDEGLKHVGSTCSMLK 459 (468)
Q Consensus 417 ~~~~~~~~~l~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~~L~ 459 (468)
.++... +..+++|+.|++++| .++......+...++...
T Consensus 329 ~i~~~~---~~~~~~L~~L~l~~N-~~~~~~~~~~~~~~~~~~ 367 (390)
T 3o6n_A 329 SIVTLK---LSTHHTLKNLTLSHN-DWDCNSLRALFRNVARPA 367 (390)
T ss_dssp CCCCCC---CCTTCCCSEEECCSS-CEEHHHHHHHTTTCCTTT
T ss_pred ccceeC---chhhccCCEEEcCCC-CccchhHHHHHHHHHhhc
Confidence 988763 667899999999999 888777777665555443
|
| >2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.87 E-value=1e-23 Score=200.49 Aligned_cols=301 Identities=17% Similarity=0.123 Sum_probs=185.2
Q ss_pred CCCCcEEEccCCCccCHHHHHHHHcCCCCCeEeccCCcccChHhHHHHHhcCCCCcEEeccCCCCCChHHHHHHHhhCCC
Q 012207 124 CRFLTEIDLSNGTEMGDAAAAAIAEAKNLERLWLARCKLITDLGIGRIAACCRKLKLLCLKWCIRVTDLGVELVALKCQE 203 (468)
Q Consensus 124 ~~~L~~L~l~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~ 203 (468)
.++++.|+++++ .+.......+..+++|++|+++++. +.......+. .+++|++|+++++. ++..+.. .+..+++
T Consensus 31 ~~~l~~L~L~~n-~l~~~~~~~~~~l~~L~~L~L~~n~-i~~~~~~~~~-~l~~L~~L~L~~n~-l~~~~~~-~~~~l~~ 105 (477)
T 2id5_A 31 PTETRLLDLGKN-RIKTLNQDEFASFPHLEELELNENI-VSAVEPGAFN-NLFNLRTLGLRSNR-LKLIPLG-VFTGLSN 105 (477)
T ss_dssp CTTCSEEECCSS-CCCEECTTTTTTCTTCCEEECTTSC-CCEECTTTTT-TCTTCCEEECCSSC-CCSCCTT-SSTTCTT
T ss_pred CCCCcEEECCCC-ccceECHhHccCCCCCCEEECCCCc-cCEeChhhhh-CCccCCEEECCCCc-CCccCcc-cccCCCC
Confidence 368999999988 4655544567889999999998864 4432222222 37889999988763 4332211 2236788
Q ss_pred ccEeeecccCCCCCCccccccCCCCCeeeecCCCCCChHHHHHHHhcCCCCCEEEccCCcccChhhHHHHHhcCCccceE
Q 012207 204 IRTLDLSYLPITEKCLPPVVKLQYLEDLVLEGCHGIDDDGLASVEYSCKSLKALNLSKCQNISHVGLSSLIKGADYLQQL 283 (468)
Q Consensus 204 L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L 283 (468)
|++|++++|.+.......+..+++|++|+++++ .+.......+.. +++|++|+++++... ... ...+..+++|+.|
T Consensus 106 L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~l~~n-~l~~~~~~~~~~-l~~L~~L~l~~n~l~-~~~-~~~l~~l~~L~~L 181 (477)
T 2id5_A 106 LTKLDISENKIVILLDYMFQDLYNLKSLEVGDN-DLVYISHRAFSG-LNSLEQLTLEKCNLT-SIP-TEALSHLHGLIVL 181 (477)
T ss_dssp CCEEECTTSCCCEECTTTTTTCTTCCEEEECCT-TCCEECTTSSTT-CTTCCEEEEESCCCS-SCC-HHHHTTCTTCCEE
T ss_pred CCEEECCCCccccCChhHccccccCCEEECCCC-ccceeChhhccC-CCCCCEEECCCCcCc-ccC-hhHhcccCCCcEE
Confidence 889999888776655566777888888888874 444333333443 788888888877532 211 2345667788888
Q ss_pred eecCCCCCchhHHHHhhcCCCCCeeEecCCcCChhHHHHHHHhCCCCCeEecccCCCCCHHHHHHHHHhCCCCCeEecCC
Q 012207 284 ILAYSFWVSADLSKCLHNFPMLQSIKFEDCPVARSGIKAIGNWHGSLKELSLSKCSGVTDEELSFVVQSHKELRKLDITC 363 (468)
Q Consensus 284 ~l~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~l~~~~~~L~~L~l~~~~~~~~~~l~~~~~~~~~L~~L~l~~ 363 (468)
+++++. +.......+..+++|++|+++++........... ...+|++|+++++ .++... ...+..+++|+.|++++
T Consensus 182 ~l~~n~-i~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~-~~~~L~~L~l~~n-~l~~~~-~~~~~~l~~L~~L~Ls~ 257 (477)
T 2id5_A 182 RLRHLN-INAIRDYSFKRLYRLKVLEISHWPYLDTMTPNCL-YGLNLTSLSITHC-NLTAVP-YLAVRHLVYLRFLNLSY 257 (477)
T ss_dssp EEESCC-CCEECTTCSCSCTTCCEEEEECCTTCCEECTTTT-TTCCCSEEEEESS-CCCSCC-HHHHTTCTTCCEEECCS
T ss_pred eCCCCc-CcEeChhhcccCcccceeeCCCCccccccCcccc-cCccccEEECcCC-cccccC-HHHhcCccccCeeECCC
Confidence 887763 3333344566777888888877654433222222 2347777777774 343211 22355667777777777
Q ss_pred CCCCCHHHHHHHHhcCCcCCeEEccCCCCCCHHHHHHHHhcCCCCCEEEccCCCCChhhHHhcccCCCCCEEeeCCCC
Q 012207 364 CRKITYASINSITKTCTSLTSLRMECCKLVSWEAFVLIGQQCQYLEELDITENEVNDEGLKSISRCSKLSSLKLGICS 441 (468)
Q Consensus 364 ~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~ 441 (468)
|. ++.... .....+++|++|+++++. ++......+. .+++|+.|++++|.++......+..+++|+.|++++|+
T Consensus 258 n~-l~~~~~-~~~~~l~~L~~L~L~~n~-l~~~~~~~~~-~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~ 331 (477)
T 2id5_A 258 NP-ISTIEG-SMLHELLRLQEIQLVGGQ-LAVVEPYAFR-GLNYLRVLNVSGNQLTTLEESVFHSVGNLETLILDSNP 331 (477)
T ss_dssp SC-CCEECT-TSCTTCTTCCEEECCSSC-CSEECTTTBT-TCTTCCEEECCSSCCSCCCGGGBSCGGGCCEEECCSSC
T ss_pred Cc-CCccCh-hhccccccCCEEECCCCc-cceECHHHhc-CcccCCEEECCCCcCceeCHhHcCCCcccCEEEccCCC
Confidence 65 332211 112356777777777643 4332222222 56777777777777766655556667777777777773
|
| >2ca6_A RAN GTPase-activating protein 1; GAP, GTPase activation, hemihedral twinning, leucine-rich repeat protein, LRR, merohedral twinning; 2.2A {Schizosaccharomyces pombe} SCOP: c.10.1.2 PDB: 1k5g_C* 1k5d_C 1yrg_A | Back alignment and structure |
|---|
Probab=99.86 E-value=4.7e-20 Score=170.12 Aligned_cols=239 Identities=15% Similarity=0.164 Sum_probs=174.3
Q ss_pred ccCCCCCeeeecCCCCCChHHHHHHHh---cCCCCCEEEccCCcc--cC---hhh---HHHHHhcCCccceEeecCCCCC
Q 012207 223 VKLQYLEDLVLEGCHGIDDDGLASVEY---SCKSLKALNLSKCQN--IS---HVG---LSSLIKGADYLQQLILAYSFWV 291 (468)
Q Consensus 223 ~~~~~L~~L~l~~~~~~~~~~~~~l~~---~~~~L~~L~l~~~~~--~~---~~~---~~~~~~~~~~L~~L~l~~~~~~ 291 (468)
..+++|++|++++| .+.......+.. .+++|++|+++++.. +. ..+ +...+..+++|++|+++++. +
T Consensus 29 ~~~~~L~~L~L~~n-~i~~~~~~~l~~~l~~~~~L~~L~Ls~~~~~~l~~~~~~~~~~l~~~l~~~~~L~~L~Ls~n~-l 106 (386)
T 2ca6_A 29 LEDDSVKEIVLSGN-TIGTEAARWLSENIASKKDLEIAEFSDIFTGRVKDEIPEALRLLLQALLKCPKLHTVRLSDNA-F 106 (386)
T ss_dssp HHCSCCCEEECTTS-EECHHHHHHHHHTTTTCTTCCEEECCSCCTTSCGGGSHHHHHHHHHHHTTCTTCCEEECCSCC-C
T ss_pred hcCCCccEEECCCC-CCCHHHHHHHHHHHHhCCCccEEeCcccccCccccchhHHHHHHHHHHhhCCcccEEECCCCc-C
Confidence 34566666666663 455544444332 367777777776521 11 112 22335678999999999984 4
Q ss_pred ch----hHHHHhhcCCCCCeeEecCCcCChhHHHHHHHh---C---------CCCCeEecccCCCCCHHHHH---HHHHh
Q 012207 292 SA----DLSKCLHNFPMLQSIKFEDCPVARSGIKAIGNW---H---------GSLKELSLSKCSGVTDEELS---FVVQS 352 (468)
Q Consensus 292 ~~----~~~~~l~~~~~L~~L~l~~~~~~~~~~~~l~~~---~---------~~L~~L~l~~~~~~~~~~l~---~~~~~ 352 (468)
.. .++..+..+++|++|++++|.+++.....+... + ++|++|++++| .+++.+++ ..+..
T Consensus 107 ~~~~~~~l~~~l~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~l~~~~~~~~~~~L~~L~L~~n-~l~~~~~~~l~~~l~~ 185 (386)
T 2ca6_A 107 GPTAQEPLIDFLSKHTPLEHLYLHNNGLGPQAGAKIARALQELAVNKKAKNAPPLRSIICGRN-RLENGSMKEWAKTFQS 185 (386)
T ss_dssp CTTTHHHHHHHHHHCTTCCEEECCSSCCHHHHHHHHHHHHHHHHHHHHHHTCCCCCEEECCSS-CCTGGGHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHhCCCCCEEECcCCCCCHHHHHHHHHHHHHHhhhhhcccCCCCcEEECCCC-CCCcHHHHHHHHHHHh
Confidence 44 467788999999999999999987766665532 3 89999999995 67655555 45668
Q ss_pred CCCCCeEecCCCCCCCHHHHHHHH----hcCCcCCeEEccCCCCCCHHHHHH---HHhcCCCCCEEEccCCCCChhhHHh
Q 012207 353 HKELRKLDITCCRKITYASINSIT----KTCTSLTSLRMECCKLVSWEAFVL---IGQQCQYLEELDITENEVNDEGLKS 425 (468)
Q Consensus 353 ~~~L~~L~l~~~~~~~~~~~~~~~----~~~~~L~~L~l~~~~~~~~~~~~~---~~~~~~~L~~L~l~~~~~~~~~~~~ 425 (468)
+++|++|++++|. +++.++..+. ..+++|+.|++++|. +++.+... ....+++|++|++++|.+++.+...
T Consensus 186 ~~~L~~L~L~~n~-l~~~g~~~l~~~~l~~~~~L~~L~Ls~n~-l~~~g~~~l~~~l~~~~~L~~L~L~~n~i~~~~~~~ 263 (386)
T 2ca6_A 186 HRLLHTVKMVQNG-IRPEGIEHLLLEGLAYCQELKVLDLQDNT-FTHLGSSALAIALKSWPNLRELGLNDCLLSARGAAA 263 (386)
T ss_dssp CTTCCEEECCSSC-CCHHHHHHHHHTTGGGCTTCCEEECCSSC-CHHHHHHHHHHHGGGCTTCCEEECTTCCCCHHHHHH
T ss_pred CCCcCEEECcCCC-CCHhHHHHHHHHHhhcCCCccEEECcCCC-CCcHHHHHHHHHHccCCCcCEEECCCCCCchhhHHH
Confidence 8999999999986 8877655544 378999999999965 77554433 3347899999999999999986554
Q ss_pred cc------cCCCCCEEeeCCCCccCHHHHHHHH----hcCcccCeeecCCCC
Q 012207 426 IS------RCSKLSSLKLGICSNITDEGLKHVG----STCSMLKELDLYRFS 467 (468)
Q Consensus 426 l~------~~~~L~~L~l~~~~~l~~~~~~~~~----~~~~~L~~L~l~~c~ 467 (468)
+. .+++|+.|++++| .++..++..+. .++|+|+.|++++|+
T Consensus 264 l~~~l~~~~~~~L~~L~L~~n-~i~~~g~~~l~~~l~~~l~~L~~L~l~~N~ 314 (386)
T 2ca6_A 264 VVDAFSKLENIGLQTLRLQYN-EIELDAVRTLKTVIDEKMPDLLFLELNGNR 314 (386)
T ss_dssp HHHHHHTCSSCCCCEEECCSS-CCBHHHHHHHHHHHHHHCTTCCEEECTTSB
T ss_pred HHHHHhhccCCCeEEEECcCC-cCCHHHHHHHHHHHHhcCCCceEEEccCCc
Confidence 33 3899999999999 99986444332 568999999999986
|
| >2z7x_B TOLL-like receptor 1, variable lymphocyte recepto; TLR2, TLR1, lipopeptide, innate immunity, glycoPro immune response, inflammatory response, leucine-rich repeat membrane, receptor; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.86 E-value=2.8e-22 Score=192.90 Aligned_cols=367 Identities=16% Similarity=0.110 Sum_probs=204.1
Q ss_pred cEEecCCCCCCChhHHHhhhcccccCCccEEecCCCCcccHHHHHHhhhcCCCCcEEEccCCCccCHHHHHHHHcCCCCC
Q 012207 74 TQLDLSLCPRANDDALSIVSSSSWKLTLRSINLSRSRLFTKVGLSSLTVNCRFLTEIDLSNGTEMGDAAAAAIAEAKNLE 153 (468)
Q Consensus 74 ~~l~l~~~~~~~~~~~~~l~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~L~ 153 (468)
+.++++++. +.. + +....+++++|+++++. +.......+. .+++|++|+++++ .+.......+..+++|+
T Consensus 3 ~~l~ls~n~-l~~-----i-p~~~~~~L~~L~Ls~n~-i~~~~~~~~~-~l~~L~~L~Ls~n-~l~~~~~~~~~~l~~L~ 72 (520)
T 2z7x_B 3 FLVDRSKNG-LIH-----V-PKDLSQKTTILNISQNY-ISELWTSDIL-SLSKLRILIISHN-RIQYLDISVFKFNQELE 72 (520)
T ss_dssp CEEECTTSC-CSS-----C-CCSCCTTCSEEECCSSC-CCCCCHHHHT-TCTTCCEEECCSS-CCCEEEGGGGTTCTTCC
T ss_pred ceEecCCCC-ccc-----c-cccccccccEEECCCCc-ccccChhhcc-ccccccEEecCCC-ccCCcChHHhhcccCCC
Confidence 467777653 321 2 22233899999999875 3333323343 8999999999998 46655446788899999
Q ss_pred eEeccCCcccChHhHHHHHhcCCCCcEEeccCCCCCChHHHHHHHhhCCCccEeeecccCCCCCCccccccCCCC--Cee
Q 012207 154 RLWLARCKLITDLGIGRIAACCRKLKLLCLKWCIRVTDLGVELVALKCQEIRTLDLSYLPITEKCLPPVVKLQYL--EDL 231 (468)
Q Consensus 154 ~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L--~~L 231 (468)
+|+++++. ++..... .+++|++|+++++. ++...++..+..+++|++|+++++.+.. ..+..+++| ++|
T Consensus 73 ~L~Ls~N~-l~~lp~~----~l~~L~~L~L~~N~-l~~~~~p~~~~~l~~L~~L~L~~n~l~~---~~~~~l~~L~L~~L 143 (520)
T 2z7x_B 73 YLDLSHNK-LVKISCH----PTVNLKHLDLSFNA-FDALPICKEFGNMSQLKFLGLSTTHLEK---SSVLPIAHLNISKV 143 (520)
T ss_dssp EEECCSSC-CCEEECC----CCCCCSEEECCSSC-CSSCCCCGGGGGCTTCCEEEEEESSCCG---GGGGGGTTSCEEEE
T ss_pred EEecCCCc-eeecCcc----ccCCccEEeccCCc-cccccchhhhccCCcceEEEecCcccch---hhccccccceeeEE
Confidence 99999874 4332211 48999999999874 4332222334588999999999998875 345556677 999
Q ss_pred eecCCCCC-ChHHHHHHHh-------------------------cCCCCCEEEccCCcc---cC-hhhHHHHHhcCCccc
Q 012207 232 VLEGCHGI-DDDGLASVEY-------------------------SCKSLKALNLSKCQN---IS-HVGLSSLIKGADYLQ 281 (468)
Q Consensus 232 ~l~~~~~~-~~~~~~~l~~-------------------------~~~~L~~L~l~~~~~---~~-~~~~~~~~~~~~~L~ 281 (468)
+++++... .......+.. .+++|+.++++++.. .. ..+....+..+++|+
T Consensus 144 ~l~~n~l~~~~~~~~~l~~l~~~~l~l~l~~n~~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~~l~~l~~L~ 223 (520)
T 2z7x_B 144 LLVLGETYGEKEDPEGLQDFNTESLHIVFPTNKEFHFILDVSVKTVANLELSNIKCVLEDNKCSYFLSILAKLQTNPKLS 223 (520)
T ss_dssp EEEECTTTTSSCCTTTTTTCCEEEEEEECCSSSCCCCCCCCCCTTCSEEEECCEEECCSTTTTHHHHHHHHGGGGCTTCC
T ss_pred EeecccccccccccccccccccceEEEEeccCcchhhhhhhhhhcccceeeccccccccccccceeecchhhhccccchh
Confidence 99885430 1111111111 145566666655420 00 011112345667788
Q ss_pred eEeecCCCCCchhHHHHh--hcCCCCCeeEecCCcCCh-------------------------------hHHHHHH----
Q 012207 282 QLILAYSFWVSADLSKCL--HNFPMLQSIKFEDCPVAR-------------------------------SGIKAIG---- 324 (468)
Q Consensus 282 ~L~l~~~~~~~~~~~~~l--~~~~~L~~L~l~~~~~~~-------------------------------~~~~~l~---- 324 (468)
.|+++++........... ...++|++|++++|.+.+ ..+..+.
T Consensus 224 ~L~l~~~~l~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~p~~~~~~~~~~l~~L~~l~l~~n~~~~p~~~~~~~~~~~~ 303 (520)
T 2z7x_B 224 NLTLNNIETTWNSFIRILQLVWHTTVWYFSISNVKLQGQLDFRDFDYSGTSLKALSIHQVVSDVFGFPQSYIYEIFSNMN 303 (520)
T ss_dssp EEEEEEEEEEHHHHHHHHHHHHTSSCSEEEEEEEEEESCCCCCCCCCCSCCCCEEEEEEEEECCCCSCTHHHHHHHHTCC
T ss_pred hccccccccCHHHHHHHHHHhhhCcccEEEeecccccCccccchhhcccccCceeEeccccccceecchhhhhcccccCc
Confidence 888876532221111111 123466666666554331 1122220
Q ss_pred -----------------HhCCCCCeEecccCCCCCHHHHHHHHHhCCCCCeEecCCCCCCCHHHHHHHHhcCCcCCeEEc
Q 012207 325 -----------------NWHGSLKELSLSKCSGVTDEELSFVVQSHKELRKLDITCCRKITYASINSITKTCTSLTSLRM 387 (468)
Q Consensus 325 -----------------~~~~~L~~L~l~~~~~~~~~~l~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l 387 (468)
..+++|++|+++++ .+++. .+..+..+++|++|++++|....-..+......+++|++|++
T Consensus 304 L~~L~l~~n~l~~~~~~~~l~~L~~L~Ls~n-~l~~~-~~~~~~~l~~L~~L~L~~N~l~~l~~~~~~~~~l~~L~~L~L 381 (520)
T 2z7x_B 304 IKNFTVSGTRMVHMLCPSKISPFLHLDFSNN-LLTDT-VFENCGHLTELETLILQMNQLKELSKIAEMTTQMKSLQQLDI 381 (520)
T ss_dssp CSEEEEESSCCCCCCCCSSCCCCCEEECCSS-CCCTT-TTTTCCCCSSCCEEECCSSCCCBHHHHHHHHTTCTTCCEEEC
T ss_pred eeEEEcCCCccccccchhhCCcccEEEeECC-ccChh-hhhhhccCCCCCEEEccCCccCccccchHHHhhCCCCCEEEC
Confidence 13456666666653 33321 122234456666666666652222223333445666666666
Q ss_pred cCCCCCCHHHHHHHHhcCCCCCEEEccCCCCChhhHHhcccCCCCCEEeeCCCCccCHHHHHHHHhcCcccCeeecCCCC
Q 012207 388 ECCKLVSWEAFVLIGQQCQYLEELDITENEVNDEGLKSISRCSKLSSLKLGICSNITDEGLKHVGSTCSMLKELDLYRFS 467 (468)
Q Consensus 388 ~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~~L~~L~l~~c~ 467 (468)
++|. ++..........+++|+.|++++|.+++..+..+. ++|+.|++++| +++ .++.....+++|+.|++++|+
T Consensus 382 s~N~-l~~~l~~~~~~~l~~L~~L~Ls~N~l~~~~~~~l~--~~L~~L~Ls~N-~l~--~ip~~~~~l~~L~~L~L~~N~ 455 (520)
T 2z7x_B 382 SQNS-VSYDEKKGDCSWTKSLLSLNMSSNILTDTIFRCLP--PRIKVLDLHSN-KIK--SIPKQVVKLEALQELNVASNQ 455 (520)
T ss_dssp CSSC-CBCCGGGCSCCCCTTCCEEECCSSCCCGGGGGSCC--TTCCEEECCSS-CCC--CCCGGGGGCTTCCEEECCSSC
T ss_pred CCCc-CCcccccchhccCccCCEEECcCCCCCcchhhhhc--ccCCEEECCCC-ccc--ccchhhhcCCCCCEEECCCCc
Confidence 6643 32211111112456666666666666554333322 57777777777 666 244333367788888888775
|
| >4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron} | Back alignment and structure |
|---|
Probab=99.86 E-value=6.1e-23 Score=204.50 Aligned_cols=359 Identities=13% Similarity=0.084 Sum_probs=237.2
Q ss_pred HHHHhccCCCCcEEecCCCCCCChhH------------H-Hhhh-c--ccccCCccEEecCCCCcccHHHHHHhhhcCCC
Q 012207 63 LSRTSARYPFITQLDLSLCPRANDDA------------L-SIVS-S--SSWKLTLRSINLSRSRLFTKVGLSSLTVNCRF 126 (468)
Q Consensus 63 ~~~~~~~~~~l~~l~l~~~~~~~~~~------------~-~~l~-~--~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~ 126 (468)
++..+..+++|+.|+++++. +.... . ..++ . ...+++|++|+++++..... ++..+..+++
T Consensus 440 IP~~l~~L~~L~~L~Ls~N~-Lsg~~i~~~~~~~s~n~~~g~iP~~l~f~~L~~L~~L~Ls~N~l~~~--iP~~l~~L~~ 516 (876)
T 4ecn_A 440 ISKAIQRLTKLQIIYFANSP-FTYDNIAVDWEDANSDYAKQYENEELSWSNLKDLTDVELYNCPNMTQ--LPDFLYDLPE 516 (876)
T ss_dssp ECGGGGGCTTCCEEEEESCC-CCGGGBSSSCSCTTSHHHHHHTTSCCCGGGCTTCCEEEEESCTTCCS--CCGGGGGCSS
T ss_pred hhHHHhcCCCCCEEECcCCc-CCCCcccccccccccccccccCChhhhhccCCCCCEEECcCCCCCcc--ChHHHhCCCC
Confidence 56678899999999999875 33310 0 0122 1 22679999999998753221 1233448999
Q ss_pred CcEEEccCCCccCH-HHHHHHHcC-------CCCCeEeccCCcccChHhHHHHHhcCCCCcEEeccCCCCCChHHHHHHH
Q 012207 127 LTEIDLSNGTEMGD-AAAAAIAEA-------KNLERLWLARCKLITDLGIGRIAACCRKLKLLCLKWCIRVTDLGVELVA 198 (468)
Q Consensus 127 L~~L~l~~~~~~~~-~~~~~l~~~-------~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~ 198 (468)
|+.|+++++..+.. .....+..+ ++|++|+++++. +...........+++|+.|+++++. ++..+ .+
T Consensus 517 L~~L~Ls~N~~lsg~~iP~~i~~L~~~~~~l~~L~~L~Ls~N~-L~~ip~~~~l~~L~~L~~L~Ls~N~-l~~lp---~~ 591 (876)
T 4ecn_A 517 LQSLNIACNRGISAAQLKADWTRLADDEDTGPKIQIFYMGYNN-LEEFPASASLQKMVKLGLLDCVHNK-VRHLE---AF 591 (876)
T ss_dssp CCEEECTTCTTSCHHHHHHHHHHHHHCTTTTTTCCEEECCSSC-CCBCCCHHHHTTCTTCCEEECTTSC-CCBCC---CC
T ss_pred CCEEECcCCCCcccccchHHHHhhhhcccccCCccEEEeeCCc-CCccCChhhhhcCCCCCEEECCCCC-cccch---hh
Confidence 99999999853554 333445554 499999999975 3321110123348999999999874 44332 34
Q ss_pred hhCCCccEeeecccCCCCCCccccccCCC-CCeeeecCCCCCChHHHHHHHh-cCCCCCEEEccCCcccChh-hHHHHH-
Q 012207 199 LKCQEIRTLDLSYLPITEKCLPPVVKLQY-LEDLVLEGCHGIDDDGLASVEY-SCKSLKALNLSKCQNISHV-GLSSLI- 274 (468)
Q Consensus 199 ~~~~~L~~L~l~~~~~~~~~~~~l~~~~~-L~~L~l~~~~~~~~~~~~~l~~-~~~~L~~L~l~~~~~~~~~-~~~~~~- 274 (468)
..+++|+.|++++|.+. .....+..+++ |++|+++++. +.... ..+.. ..++|+.|+++++...... .+..-.
T Consensus 592 ~~L~~L~~L~Ls~N~l~-~lp~~l~~l~~~L~~L~Ls~N~-L~~lp-~~~~~~~~~~L~~L~Ls~N~l~g~ip~l~~~l~ 668 (876)
T 4ecn_A 592 GTNVKLTDLKLDYNQIE-EIPEDFCAFTDQVEGLGFSHNK-LKYIP-NIFNAKSVYVMGSVDFSYNKIGSEGRNISCSMD 668 (876)
T ss_dssp CTTSEESEEECCSSCCS-CCCTTSCEECTTCCEEECCSSC-CCSCC-SCCCTTCSSCEEEEECCSSCTTTTSSSCSSCTT
T ss_pred cCCCcceEEECcCCccc-cchHHHhhccccCCEEECcCCC-CCcCc-hhhhccccCCCCEEECcCCcCCCccccchhhhc
Confidence 57899999999999887 55667888888 9999999954 44221 11111 1245999999988643211 000001
Q ss_pred -hcCCccceEeecCCCCCchhHHHHhhcCCCCCeeEecCCcCChhHHHHHHH-------hCCCCCeEecccCCCCCHHHH
Q 012207 275 -KGADYLQQLILAYSFWVSADLSKCLHNFPMLQSIKFEDCPVARSGIKAIGN-------WHGSLKELSLSKCSGVTDEEL 346 (468)
Q Consensus 275 -~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~l~~-------~~~~L~~L~l~~~~~~~~~~l 346 (468)
...++|+.|+++++. +.......+..+++|+.|++++|.+... ...+.. .+++|+.|++++| .++ .+
T Consensus 669 ~~~~~~L~~L~Ls~N~-L~~lp~~~~~~l~~L~~L~Ls~N~L~~i-p~~~~~~~~~~l~nl~~L~~L~Ls~N-~L~--~l 743 (876)
T 4ecn_A 669 DYKGINASTVTLSYNE-IQKFPTELFATGSPISTIILSNNLMTSI-PENSLKPKDGNYKNTYLLTTIDLRFN-KLT--SL 743 (876)
T ss_dssp TCCCCCEEEEECCSSC-CCSCCHHHHHTTCCCSEEECCSCCCSCC-CTTSSSCTTSCCTTGGGCCEEECCSS-CCC--CC
T ss_pred cccCCCcCEEEccCCc-CCccCHHHHccCCCCCEEECCCCcCCcc-ChHHhccccccccccCCccEEECCCC-CCc--cc
Confidence 123589999999984 4433334455899999999999987622 111111 2238999999985 555 24
Q ss_pred HHHHH--hCCCCCeEecCCCCCCCHHHHHHHHhcCCcCCeEEccCCC-----CCCHHHHHHHHhcCCCCCEEEccCCCCC
Q 012207 347 SFVVQ--SHKELRKLDITCCRKITYASINSITKTCTSLTSLRMECCK-----LVSWEAFVLIGQQCQYLEELDITENEVN 419 (468)
Q Consensus 347 ~~~~~--~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~-----~~~~~~~~~~~~~~~~L~~L~l~~~~~~ 419 (468)
+..+. .+++|+.|++++|. ++. +......+++|+.|+++++. .+.......+. .+++|+.|++++|.++
T Consensus 744 p~~l~~~~l~~L~~L~Ls~N~-L~~--lp~~l~~L~~L~~L~Ls~N~~ls~N~l~~~ip~~l~-~L~~L~~L~Ls~N~L~ 819 (876)
T 4ecn_A 744 SDDFRATTLPYLSNMDVSYNC-FSS--FPTQPLNSSQLKAFGIRHQRDAEGNRILRQWPTGIT-TCPSLIQLQIGSNDIR 819 (876)
T ss_dssp CGGGSTTTCTTCCEEECCSSC-CSS--CCCGGGGCTTCCEEECCCCBCTTCCBCCCCCCTTGG-GCSSCCEEECCSSCCC
T ss_pred hHHhhhccCCCcCEEEeCCCC-CCc--cchhhhcCCCCCEEECCCCCCcccccccccChHHHh-cCCCCCEEECCCCCCC
Confidence 44444 78999999999986 443 33334579999999998743 22222222333 7999999999999985
Q ss_pred hhhHHhcccCCCCCEEeeCCCCccCH
Q 012207 420 DEGLKSISRCSKLSSLKLGICSNITD 445 (468)
Q Consensus 420 ~~~~~~l~~~~~L~~L~l~~~~~l~~ 445 (468)
... ..+ .++|+.|++++| .+..
T Consensus 820 ~Ip-~~l--~~~L~~LdLs~N-~l~~ 841 (876)
T 4ecn_A 820 KVD-EKL--TPQLYILDIADN-PNIS 841 (876)
T ss_dssp BCC-SCC--CSSSCEEECCSC-TTCE
T ss_pred ccC-Hhh--cCCCCEEECCCC-CCCc
Confidence 433 333 379999999999 5543
|
| >2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.86 E-value=7.2e-25 Score=213.64 Aligned_cols=156 Identities=18% Similarity=0.118 Sum_probs=101.8
Q ss_pred CCCcEEecCCCCCCChhHHHhhhcccccCCccEEecCCCCcccHHHHHHhhhcCCCCcEEEccCCCccCHHHHHHHHcCC
Q 012207 71 PFITQLDLSLCPRANDDALSIVSSSSWKLTLRSINLSRSRLFTKVGLSSLTVNCRFLTEIDLSNGTEMGDAAAAAIAEAK 150 (468)
Q Consensus 71 ~~l~~l~l~~~~~~~~~~~~~l~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~l~~~~ 150 (468)
++++.|+++++. +...... ....+++|++|+++++. +..... ..+..+++|++|+++++. +.......+..++
T Consensus 28 ~~l~~L~Ls~n~-l~~~~~~---~~~~l~~L~~L~Ls~n~-i~~i~~-~~~~~l~~L~~L~L~~n~-l~~~~~~~~~~l~ 100 (570)
T 2z63_A 28 FSTKNLDLSFNP-LRHLGSY---SFFSFPELQVLDLSRCE-IQTIED-GAYQSLSHLSTLILTGNP-IQSLALGAFSGLS 100 (570)
T ss_dssp SSCCEEECCSCC-CCEECTT---TTTTCSSCCEEECTTCC-CCEECT-TTTTTCTTCCEEECTTCC-CCEECTTTTTTCT
T ss_pred ccccEEEccCCc-cCccChh---HhhCCCCceEEECCCCc-CCccCc-ccccCchhCCEEeCcCCc-CCccCHhhhcCcc
Confidence 468999998764 2221111 23567899999998874 332222 233478999999999884 5554445678899
Q ss_pred CCCeEeccCCcccChHhHHHHHhcCCCCcEEeccCCCCCChHHHHHHHhhCCCccEeeecccCCCCCCccccccCCCC--
Q 012207 151 NLERLWLARCKLITDLGIGRIAACCRKLKLLCLKWCIRVTDLGVELVALKCQEIRTLDLSYLPITEKCLPPVVKLQYL-- 228 (468)
Q Consensus 151 ~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L-- 228 (468)
+|++|++.++. +....... ...+++|++|+++++. +....++..+..+++|++|+++++.+.......+..+++|
T Consensus 101 ~L~~L~L~~n~-l~~l~~~~-~~~l~~L~~L~L~~n~-l~~~~lp~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~ 177 (570)
T 2z63_A 101 SLQKLVAVETN-LASLENFP-IGHLKTLKELNVAHNL-IQSFKLPEYFSNLTNLEHLDLSSNKIQSIYCTDLRVLHQMPL 177 (570)
T ss_dssp TCCEEECTTSC-CCCSTTCS-CTTCTTCCEEECCSSC-CCCCCCCGGGGGCTTCCEEECTTSCCCEECGGGGHHHHTCTT
T ss_pred ccccccccccc-cccCCCcc-ccccccccEEecCCCc-cceecChhhhcccCCCCEEeCcCCccceecHHHccchhccch
Confidence 99999999864 33211111 2348999999999863 3332222234578999999999998776555556555565
Q ss_pred --CeeeecCC
Q 012207 229 --EDLVLEGC 236 (468)
Q Consensus 229 --~~L~l~~~ 236 (468)
+.++++++
T Consensus 178 ~~~~L~l~~n 187 (570)
T 2z63_A 178 LNLSLDLSLN 187 (570)
T ss_dssp CCCEEECTTC
T ss_pred hhhhcccCCC
Confidence 56666653
|
| >3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.86 E-value=7.1e-24 Score=214.78 Aligned_cols=249 Identities=18% Similarity=0.091 Sum_probs=110.4
Q ss_pred CCccEeeecccCCCCCCccccccCCCCCeeeecCCCCCChHHHHHHHhcCCCCCEEEccCCcccChhhHHHHHhcCCccc
Q 012207 202 QEIRTLDLSYLPITEKCLPPVVKLQYLEDLVLEGCHGIDDDGLASVEYSCKSLKALNLSKCQNISHVGLSSLIKGADYLQ 281 (468)
Q Consensus 202 ~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~ 281 (468)
++|+.|+++++.+.......+..+++|+.|+++++ .+.......+.. +++|++|+++++..... ....+..+++|+
T Consensus 266 ~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n-~i~~~~~~~~~~-l~~L~~L~Ls~N~l~~~--~~~~~~~l~~L~ 341 (844)
T 3j0a_A 266 SSVRHLDLSHGFVFSLNSRVFETLKDLKVLNLAYN-KINKIADEAFYG-LDNLQVLNLSYNLLGEL--YSSNFYGLPKVA 341 (844)
T ss_dssp SCCCEEECTTCCCCEECSCCSSSCCCCCEEEEESC-CCCEECTTTTTT-CSSCCEEEEESCCCSCC--CSCSCSSCTTCC
T ss_pred CCccEEECCCCcccccChhhhhcCCCCCEEECCCC-cCCCCChHHhcC-CCCCCEEECCCCCCCcc--CHHHhcCCCCCC
Confidence 44555555555444333334445556666666553 333222222322 55666666665542110 011133455666
Q ss_pred eEeecCCCCCchhHHHHhhcCCCCCeeEecCCcCChhHHHHHHHhCCCCCeEecccCC-------------------CCC
Q 012207 282 QLILAYSFWVSADLSKCLHNFPMLQSIKFEDCPVARSGIKAIGNWHGSLKELSLSKCS-------------------GVT 342 (468)
Q Consensus 282 ~L~l~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~l~~~~~~L~~L~l~~~~-------------------~~~ 342 (468)
.|+++++ .+.......+..+++|+.|++++|.+.... .+++|+.|+++++. .++
T Consensus 342 ~L~L~~N-~i~~~~~~~~~~l~~L~~L~Ls~N~l~~i~------~~~~L~~L~l~~N~l~~l~~~~~~l~~L~ls~N~l~ 414 (844)
T 3j0a_A 342 YIDLQKN-HIAIIQDQTFKFLEKLQTLDLRDNALTTIH------FIPSIPDIFLSGNKLVTLPKINLTANLIHLSENRLE 414 (844)
T ss_dssp EEECCSC-CCCCCCSSCSCSCCCCCEEEEETCCSCCCS------SCCSCSEEEEESCCCCCCCCCCTTCCEEECCSCCCC
T ss_pred EEECCCC-CCCccChhhhcCCCCCCEEECCCCCCCccc------CCCCcchhccCCCCcccccccccccceeecccCccc
Confidence 6666655 222222333455566666666666544211 13444554444421 111
Q ss_pred HHHHHHHHHhCCCCCeEecCCCCCCCHHHHHHHHhcCCcCCeEEccCCCCCCHH----HHHHHHhcCCCCCEEEccCCCC
Q 012207 343 DEELSFVVQSHKELRKLDITCCRKITYASINSITKTCTSLTSLRMECCKLVSWE----AFVLIGQQCQYLEELDITENEV 418 (468)
Q Consensus 343 ~~~l~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~----~~~~~~~~~~~L~~L~l~~~~~ 418 (468)
.......+..+++|+.|++++|. ++..........+++|+.|+++++. ++.. ........+++|+.|++++|.+
T Consensus 415 ~l~~~~~~~~l~~L~~L~Ls~N~-l~~~~~~~~~~~~~~L~~L~Ls~N~-l~~~~~~~~~~~~~~~l~~L~~L~Ls~N~l 492 (844)
T 3j0a_A 415 NLDILYFLLRVPHLQILILNQNR-FSSCSGDQTPSENPSLEQLFLGENM-LQLAWETELCWDVFEGLSHLQVLYLNHNYL 492 (844)
T ss_dssp SSTTHHHHTTCTTCCEEEEESCC-CCCCCSSSSSCSCTTCCBCEEESCC-CSSSCCSCCCSSCSSCBCCEECCCCCHHHH
T ss_pred cCchhhhhhcCCccceeeCCCCc-ccccccccccccCCccccccCCCCc-cccccccccchhhhcCcccccEEECCCCcc
Confidence 11111222344455555554443 1110000011123455555554432 1100 0001112456666666666666
Q ss_pred ChhhHHhcccCCCCCEEeeCCCCccCHHHHHHHHhcCcccCeeecCCCC
Q 012207 419 NDEGLKSISRCSKLSSLKLGICSNITDEGLKHVGSTCSMLKELDLYRFS 467 (468)
Q Consensus 419 ~~~~~~~l~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~~L~~L~l~~c~ 467 (468)
+......+..+++|+.|++++| +++...... ..++|+.|++++|+
T Consensus 493 ~~~~~~~~~~l~~L~~L~Ls~N-~l~~l~~~~---~~~~L~~L~Ls~N~ 537 (844)
T 3j0a_A 493 NSLPPGVFSHLTALRGLSLNSN-RLTVLSHND---LPANLEILDISRNQ 537 (844)
T ss_dssp TTCCTTSSSSCCSCSEEEEESC-CCSSCCCCC---CCSCCCEEEEEEEC
T ss_pred cccChhHccchhhhheeECCCC-CCCccChhh---hhccccEEECCCCc
Confidence 6555455556677777777777 665311111 11567777776654
|
| >2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.85 E-value=3.2e-23 Score=197.06 Aligned_cols=305 Identities=15% Similarity=0.120 Sum_probs=211.1
Q ss_pred cccCCccEEecCCCCcccHHHHHHhhhcCCCCcEEEccCCCccCHHHHHHHHcCCCCCeEeccCCcccChHhHHHHHhcC
Q 012207 96 SWKLTLRSINLSRSRLFTKVGLSSLTVNCRFLTEIDLSNGTEMGDAAAAAIAEAKNLERLWLARCKLITDLGIGRIAACC 175 (468)
Q Consensus 96 ~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~ 175 (468)
...++++.|+++++. +....... +..+++|++|+++++ .+.......+..+++|++|+++++. +....... ...+
T Consensus 29 ~~~~~l~~L~L~~n~-l~~~~~~~-~~~l~~L~~L~L~~n-~i~~~~~~~~~~l~~L~~L~L~~n~-l~~~~~~~-~~~l 103 (477)
T 2id5_A 29 GIPTETRLLDLGKNR-IKTLNQDE-FASFPHLEELELNEN-IVSAVEPGAFNNLFNLRTLGLRSNR-LKLIPLGV-FTGL 103 (477)
T ss_dssp CCCTTCSEEECCSSC-CCEECTTT-TTTCTTCCEEECTTS-CCCEECTTTTTTCTTCCEEECCSSC-CCSCCTTS-STTC
T ss_pred CCCCCCcEEECCCCc-cceECHhH-ccCCCCCCEEECCCC-ccCEeChhhhhCCccCCEEECCCCc-CCccCccc-ccCC
Confidence 345789999999864 33322222 347999999999988 4665544678889999999999864 33322111 2338
Q ss_pred CCCcEEeccCCCCCChHHHHHHHhhCCCccEeeecccCCCCCCccccccCCCCCeeeecCCCCCChHHHHHHHhcCCCCC
Q 012207 176 RKLKLLCLKWCIRVTDLGVELVALKCQEIRTLDLSYLPITEKCLPPVVKLQYLEDLVLEGCHGIDDDGLASVEYSCKSLK 255 (468)
Q Consensus 176 ~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~~L~ 255 (468)
++|++|+++++. +..... ..+..+++|++|+++++.+.......+..+++|++|+++++ .+.......+.. +++|+
T Consensus 104 ~~L~~L~Ls~n~-i~~~~~-~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n-~l~~~~~~~l~~-l~~L~ 179 (477)
T 2id5_A 104 SNLTKLDISENK-IVILLD-YMFQDLYNLKSLEVGDNDLVYISHRAFSGLNSLEQLTLEKC-NLTSIPTEALSH-LHGLI 179 (477)
T ss_dssp TTCCEEECTTSC-CCEECT-TTTTTCTTCCEEEECCTTCCEECTTSSTTCTTCCEEEEESC-CCSSCCHHHHTT-CTTCC
T ss_pred CCCCEEECCCCc-cccCCh-hHccccccCCEEECCCCccceeChhhccCCCCCCEEECCCC-cCcccChhHhcc-cCCCc
Confidence 999999999874 332211 12347899999999999887666667888999999999995 555555555555 99999
Q ss_pred EEEccCCcccChhhHHHHHhcCCccceEeecCCCCCchhHHHHhhcCCCCCeeEecCCcCChhHHHHHHHhCCCCCeEec
Q 012207 256 ALNLSKCQNISHVGLSSLIKGADYLQQLILAYSFWVSADLSKCLHNFPMLQSIKFEDCPVARSGIKAIGNWHGSLKELSL 335 (468)
Q Consensus 256 ~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~l~~~~~~L~~L~l 335 (468)
.|++.++...... ...+..+++|+.|+++++.... ..+.......+|++|++++|.+.......+. .+++|++|++
T Consensus 180 ~L~l~~n~i~~~~--~~~~~~l~~L~~L~l~~~~~~~-~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~-~l~~L~~L~L 255 (477)
T 2id5_A 180 VLRLRHLNINAIR--DYSFKRLYRLKVLEISHWPYLD-TMTPNCLYGLNLTSLSITHCNLTAVPYLAVR-HLVYLRFLNL 255 (477)
T ss_dssp EEEEESCCCCEEC--TTCSCSCTTCCEEEEECCTTCC-EECTTTTTTCCCSEEEEESSCCCSCCHHHHT-TCTTCCEEEC
T ss_pred EEeCCCCcCcEeC--hhhcccCcccceeeCCCCcccc-ccCcccccCccccEEECcCCcccccCHHHhc-CccccCeeEC
Confidence 9999987532211 1224567899999999875443 2333333455999999999998865545554 7899999999
Q ss_pred ccCCCCCHHHHHHHHHhCCCCCeEecCCCCCCCHHHHHHHHhcCCcCCeEEccCCCCCCHHHHHHHHhcCCCCCEEEccC
Q 012207 336 SKCSGVTDEELSFVVQSHKELRKLDITCCRKITYASINSITKTCTSLTSLRMECCKLVSWEAFVLIGQQCQYLEELDITE 415 (468)
Q Consensus 336 ~~~~~~~~~~l~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~ 415 (468)
+++ .++... ...+..+++|+.|++++|. ++..... .+..+++|+.|+++++. ++......+ ..+++|+.|++++
T Consensus 256 s~n-~l~~~~-~~~~~~l~~L~~L~L~~n~-l~~~~~~-~~~~l~~L~~L~L~~N~-l~~~~~~~~-~~l~~L~~L~l~~ 329 (477)
T 2id5_A 256 SYN-PISTIE-GSMLHELLRLQEIQLVGGQ-LAVVEPY-AFRGLNYLRVLNVSGNQ-LTTLEESVF-HSVGNLETLILDS 329 (477)
T ss_dssp CSS-CCCEEC-TTSCTTCTTCCEEECCSSC-CSEECTT-TBTTCTTCCEEECCSSC-CSCCCGGGB-SCGGGCCEEECCS
T ss_pred CCC-cCCccC-hhhccccccCCEEECCCCc-cceECHH-HhcCcccCCEEECCCCc-CceeCHhHc-CCCcccCEEEccC
Confidence 985 444321 2234567999999999886 4332111 22468999999999864 543222222 3678999999999
Q ss_pred CCCC
Q 012207 416 NEVN 419 (468)
Q Consensus 416 ~~~~ 419 (468)
|.+.
T Consensus 330 N~l~ 333 (477)
T 2id5_A 330 NPLA 333 (477)
T ss_dssp SCEE
T ss_pred CCcc
Confidence 8765
|
| >3bz5_A Internalin-J, INLJ; leucine rich repeat (LRR), cysteine ladder, asparagine ladder, virulence factor, solenoid, cell WALL; 2.70A {Listeria monocytogenes} | Back alignment and structure |
|---|
Probab=99.85 E-value=1.7e-21 Score=182.62 Aligned_cols=309 Identities=17% Similarity=0.139 Sum_probs=184.3
Q ss_pred hccCCCCcEEecCCCCCCChhHHHhhhcccccCCccEEecCCCCcccHHHHHHhhhcCCCCcEEEccCCCccCHHHHHHH
Q 012207 67 SARYPFITQLDLSLCPRANDDALSIVSSSSWKLTLRSINLSRSRLFTKVGLSSLTVNCRFLTEIDLSNGTEMGDAAAAAI 146 (468)
Q Consensus 67 ~~~~~~l~~l~l~~~~~~~~~~~~~l~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~l 146 (468)
+..+++++.|+++++. +.+. +....+++|++|+++++. +.... ...+++|++|+++++. +... .+
T Consensus 38 ~~~l~~L~~L~Ls~n~-l~~~-----~~l~~l~~L~~L~Ls~n~-l~~~~----~~~l~~L~~L~Ls~N~-l~~~---~~ 102 (457)
T 3bz5_A 38 EEQLATLTSLDCHNSS-ITDM-----TGIEKLTGLTKLICTSNN-ITTLD----LSQNTNLTYLACDSNK-LTNL---DV 102 (457)
T ss_dssp HHHHTTCCEEECCSSC-CCCC-----TTGGGCTTCSEEECCSSC-CSCCC----CTTCTTCSEEECCSSC-CSCC---CC
T ss_pred hhHcCCCCEEEccCCC-cccC-----hhhcccCCCCEEEccCCc-CCeEc----cccCCCCCEEECcCCC-Ccee---ec
Confidence 3456788888888763 3321 123456888888888764 33221 3367888888888874 4443 26
Q ss_pred HcCCCCCeEeccCCcccChHhHHHHHhcCCCCcEEeccCCCCCChHHHHHHHhhCCCccEeeecccCCCCCCccccccCC
Q 012207 147 AEAKNLERLWLARCKLITDLGIGRIAACCRKLKLLCLKWCIRVTDLGVELVALKCQEIRTLDLSYLPITEKCLPPVVKLQ 226 (468)
Q Consensus 147 ~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~ 226 (468)
..+++|++|+++++. ++... ...+++|++|+++++. ++..+ ...+++|++|++++|...... .+..++
T Consensus 103 ~~l~~L~~L~L~~N~-l~~l~----~~~l~~L~~L~l~~N~-l~~l~----l~~l~~L~~L~l~~n~~~~~~--~~~~l~ 170 (457)
T 3bz5_A 103 TPLTKLTYLNCDTNK-LTKLD----VSQNPLLTYLNCARNT-LTEID----VSHNTQLTELDCHLNKKITKL--DVTPQT 170 (457)
T ss_dssp TTCTTCCEEECCSSC-CSCCC----CTTCTTCCEEECTTSC-CSCCC----CTTCTTCCEEECTTCSCCCCC--CCTTCT
T ss_pred CCCCcCCEEECCCCc-CCeec----CCCCCcCCEEECCCCc-cceec----cccCCcCCEEECCCCCccccc--ccccCC
Confidence 678888888888764 33322 2347888888888763 33321 346788888888887332222 456678
Q ss_pred CCCeeeecCCCCCChHHHHHHHhcCCCCCEEEccCCcccChhhHHHHHhcCCccceEeecCCCCCchhHHHHhhcCCCCC
Q 012207 227 YLEDLVLEGCHGIDDDGLASVEYSCKSLKALNLSKCQNISHVGLSSLIKGADYLQQLILAYSFWVSADLSKCLHNFPMLQ 306 (468)
Q Consensus 227 ~L~~L~l~~~~~~~~~~~~~l~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~L~ 306 (468)
+|++|+++++ .+.... +.. +++|+.|+++++.... .. +..+++|+.|+++++. +.. ++ +..+++|+
T Consensus 171 ~L~~L~ls~n-~l~~l~---l~~-l~~L~~L~l~~N~l~~-~~----l~~l~~L~~L~Ls~N~-l~~-ip--~~~l~~L~ 236 (457)
T 3bz5_A 171 QLTTLDCSFN-KITELD---VSQ-NKLLNRLNCDTNNITK-LD----LNQNIQLTFLDCSSNK-LTE-ID--VTPLTQLT 236 (457)
T ss_dssp TCCEEECCSS-CCCCCC---CTT-CTTCCEEECCSSCCSC-CC----CTTCTTCSEEECCSSC-CSC-CC--CTTCTTCS
T ss_pred cCCEEECCCC-ccceec---ccc-CCCCCEEECcCCcCCe-ec----cccCCCCCEEECcCCc-ccc-cC--ccccCCCC
Confidence 8888888874 444332 333 7788888888775322 21 4556788888888774 332 22 66778888
Q ss_pred eeEecCCcCChhHHHHHHHhCCCCCeEecccCCCCCHHHHHHHHHhCCCCCeEecCCCCCCCHHHHHHHHhcCCcCCeEE
Q 012207 307 SIKFEDCPVARSGIKAIGNWHGSLKELSLSKCSGVTDEELSFVVQSHKELRKLDITCCRKITYASINSITKTCTSLTSLR 386 (468)
Q Consensus 307 ~L~l~~~~~~~~~~~~l~~~~~~L~~L~l~~~~~~~~~~l~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~ 386 (468)
.|++++|.+....+. .+++|+.|+++++ +|+.|++++|....... ...+++|+.|+
T Consensus 237 ~L~l~~N~l~~~~~~----~l~~L~~L~l~~n----------------~L~~L~l~~n~~~~~~~----~~~l~~L~~L~ 292 (457)
T 3bz5_A 237 YFDCSVNPLTELDVS----TLSKLTTLHCIQT----------------DLLEIDLTHNTQLIYFQ----AEGCRKIKELD 292 (457)
T ss_dssp EEECCSSCCSCCCCT----TCTTCCEEECTTC----------------CCSCCCCTTCTTCCEEE----CTTCTTCCCCC
T ss_pred EEEeeCCcCCCcCHH----HCCCCCEEeccCC----------------CCCEEECCCCccCCccc----ccccccCCEEE
Confidence 888888877654321 4455555554431 23333333333222111 11334444444
Q ss_pred ccCCCCCCHHH-----HH--HHHhcCCCCCEEEccCCCCChhhHHhcccCCCCCEEeeCCCCccCH
Q 012207 387 MECCKLVSWEA-----FV--LIGQQCQYLEELDITENEVNDEGLKSISRCSKLSSLKLGICSNITD 445 (468)
Q Consensus 387 l~~~~~~~~~~-----~~--~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~l~~ 445 (468)
+++|..+.... +. .+ ..+++|+.|++++|.++.. .++.+++|+.|++++| ++++
T Consensus 293 Ls~n~~l~~l~~~~~~L~~L~l-~~~~~L~~L~L~~N~l~~l---~l~~l~~L~~L~l~~N-~l~~ 353 (457)
T 3bz5_A 293 VTHNTQLYLLDCQAAGITELDL-SQNPKLVYLYLNNTELTEL---DVSHNTKLKSLSCVNA-HIQD 353 (457)
T ss_dssp CTTCTTCCEEECTTCCCSCCCC-TTCTTCCEEECTTCCCSCC---CCTTCTTCSEEECCSS-CCCB
T ss_pred CCCCcccceeccCCCcceEech-hhcccCCEEECCCCccccc---ccccCCcCcEEECCCC-CCCC
Confidence 44443211100 00 01 1447888888888888774 3777888888888888 7764
|
| >3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae} | Back alignment and structure |
|---|
Probab=99.85 E-value=2.1e-22 Score=196.18 Aligned_cols=322 Identities=16% Similarity=0.085 Sum_probs=222.3
Q ss_pred ccCCccEEecCCCCcccHHHHHHhhhcCCCCcEEEccCCCccCHHHHHHHHcCCCCCeEeccCCcccChHhHHHHHhcCC
Q 012207 97 WKLTLRSINLSRSRLFTKVGLSSLTVNCRFLTEIDLSNGTEMGDAAAAAIAEAKNLERLWLARCKLITDLGIGRIAACCR 176 (468)
Q Consensus 97 ~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~ 176 (468)
...+++.++++++. +... ...++..+++|+.|+++++ .+.......+..+++|++|+++++. +.......+ ..++
T Consensus 49 ~l~~l~~l~l~~~~-l~~l-p~~~~~~l~~L~~L~L~~n-~l~~~~~~~~~~l~~L~~L~L~~n~-l~~~~~~~~-~~l~ 123 (597)
T 3oja_B 49 TLNNQKIVTFKNST-MRKL-PAALLDSFRQVELLNLNDL-QIEEIDTYAFAYAHTIQKLYMGFNA-IRYLPPHVF-QNVP 123 (597)
T ss_dssp GGCCCSEEEESSCE-ESEE-CTHHHHHCCCCSEEECTTS-CCCEECTTTTTTCTTCCEEECCSSC-CCCCCTTTT-TTCT
T ss_pred cCCCceEEEeeCCC-CCCc-CHHHHccCCCCcEEECCCC-CCCCCChHHhcCCCCCCEEECCCCc-CCCCCHHHH-cCCC
Confidence 45788999998753 2221 1233447899999999988 4665554578889999999999875 333222222 3489
Q ss_pred CCcEEeccCCCCCChHHHHHHHhhCCCccEeeecccCCCCCCccccccCCCCCeeeecCCCCCChHHHHHHHhcCCCCCE
Q 012207 177 KLKLLCLKWCIRVTDLGVELVALKCQEIRTLDLSYLPITEKCLPPVVKLQYLEDLVLEGCHGIDDDGLASVEYSCKSLKA 256 (468)
Q Consensus 177 ~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~~L~~ 256 (468)
+|++|+++++ .++..+. .++..+++|++|++++|.+.......+..+++|++|+++++ .+.... +. .+++|+.
T Consensus 124 ~L~~L~L~~n-~l~~l~~-~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N-~l~~~~---~~-~l~~L~~ 196 (597)
T 3oja_B 124 LLTVLVLERN-DLSSLPR-GIFHNTPKLTTLSMSNNNLERIEDDTFQATTSLQNLQLSSN-RLTHVD---LS-LIPSLFH 196 (597)
T ss_dssp TCCEEECCSS-CCCCCCT-TTTTTCTTCCEEECCSSCCCBCCTTTTTTCTTCCEEECTTS-CCSBCC---GG-GCTTCSE
T ss_pred CCCEEEeeCC-CCCCCCH-HHhccCCCCCEEEeeCCcCCCCChhhhhcCCcCcEEECcCC-CCCCcC---hh-hhhhhhh
Confidence 9999999987 3443222 22347899999999999888766677888999999999985 444332 23 3889999
Q ss_pred EEccCCcccChhhHHHHHhcCCccceEeecCCCCCchhHHHHhhcCCCCCeeEecCCcCChhHHHHHHHhCCCCCeEecc
Q 012207 257 LNLSKCQNISHVGLSSLIKGADYLQQLILAYSFWVSADLSKCLHNFPMLQSIKFEDCPVARSGIKAIGNWHGSLKELSLS 336 (468)
Q Consensus 257 L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~l~~~~~~L~~L~l~ 336 (468)
|+++++.. .. +...++|+.|+++++.. ..... ...++|+.|++++|.+++. ..+ ..+++|+.|+++
T Consensus 197 L~l~~n~l-~~------l~~~~~L~~L~ls~n~l-~~~~~---~~~~~L~~L~L~~n~l~~~--~~l-~~l~~L~~L~Ls 262 (597)
T 3oja_B 197 ANVSYNLL-ST------LAIPIAVEELDASHNSI-NVVRG---PVNVELTILKLQHNNLTDT--AWL-LNYPGLVEVDLS 262 (597)
T ss_dssp EECCSSCC-SE------EECCTTCSEEECCSSCC-CEEEC---SCCSCCCEEECCSSCCCCC--GGG-GGCTTCSEEECC
T ss_pred hhcccCcc-cc------ccCCchhheeeccCCcc-ccccc---ccCCCCCEEECCCCCCCCC--hhh-ccCCCCCEEECC
Confidence 99998753 22 23456899999988743 21111 1236899999999988764 223 268999999999
Q ss_pred cCCCCCHHHHHHHHHhCCCCCeEecCCCCCCCHHHHHHHHhcCCcCCeEEccCCCCCCHHHHHHHHhcCCCCCEEEccCC
Q 012207 337 KCSGVTDEELSFVVQSHKELRKLDITCCRKITYASINSITKTCTSLTSLRMECCKLVSWEAFVLIGQQCQYLEELDITEN 416 (468)
Q Consensus 337 ~~~~~~~~~l~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~ 416 (468)
++ .++.. .+..+..+++|+.|++++|. ++.. ......+++|+.|++++|. ++.. ...+ ..+++|+.|++++|
T Consensus 263 ~N-~l~~~-~~~~~~~l~~L~~L~Ls~N~-l~~l--~~~~~~l~~L~~L~Ls~N~-l~~i-~~~~-~~l~~L~~L~L~~N 334 (597)
T 3oja_B 263 YN-ELEKI-MYHPFVKMQRLERLYISNNR-LVAL--NLYGQPIPTLKVLDLSHNH-LLHV-ERNQ-PQFDRLENLYLDHN 334 (597)
T ss_dssp SS-CCCEE-ESGGGTTCSSCCEEECTTSC-CCEE--ECSSSCCTTCCEEECCSSC-CCCC-GGGH-HHHTTCSEEECCSS
T ss_pred CC-ccCCC-CHHHhcCccCCCEEECCCCC-CCCC--CcccccCCCCcEEECCCCC-CCcc-Cccc-ccCCCCCEEECCCC
Confidence 85 45432 23345678999999999886 4321 2222358999999999865 4321 1122 26789999999999
Q ss_pred CCChhhHHhcccCCCCCEEeeCCCCccCHHHHHHHHhcCc
Q 012207 417 EVNDEGLKSISRCSKLSSLKLGICSNITDEGLKHVGSTCS 456 (468)
Q Consensus 417 ~~~~~~~~~l~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~ 456 (468)
.++... +..+++|+.|++++| .++......+...++
T Consensus 335 ~l~~~~---~~~~~~L~~L~l~~N-~~~~~~~~~~~~~~~ 370 (597)
T 3oja_B 335 SIVTLK---LSTHHTLKNLTLSHN-DWDCNSLRALFRNVA 370 (597)
T ss_dssp CCCCCC---CCTTCCCSEEECCSS-CEEHHHHHHHTTTCC
T ss_pred CCCCcC---hhhcCCCCEEEeeCC-CCCChhHHHHHHHHh
Confidence 887753 667889999999999 777666665554443
|
| >3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae} | Back alignment and structure |
|---|
Probab=99.84 E-value=1.5e-21 Score=180.36 Aligned_cols=307 Identities=17% Similarity=0.123 Sum_probs=133.4
Q ss_pred CCCCcEEEccCCCccCHHHHHHHHcCCCCCeEeccCCcccChHhHHHHHhcCCCCcEEeccCCCCCChHHHHHHHhhCCC
Q 012207 124 CRFLTEIDLSNGTEMGDAAAAAIAEAKNLERLWLARCKLITDLGIGRIAACCRKLKLLCLKWCIRVTDLGVELVALKCQE 203 (468)
Q Consensus 124 ~~~L~~L~l~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~ 203 (468)
+++++.|++.++ .++..+...+..+++|++|++.++. +.......+ ..+++|++|+++++. ++..+. .....+++
T Consensus 44 l~~l~~l~l~~~-~l~~l~~~~~~~l~~L~~L~L~~n~-i~~~~~~~~-~~l~~L~~L~L~~n~-l~~~~~-~~~~~l~~ 118 (390)
T 3o6n_A 44 LNNQKIVTFKNS-TMRKLPAALLDSFRQVELLNLNDLQ-IEEIDTYAF-AYAHTIQKLYMGFNA-IRYLPP-HVFQNVPL 118 (390)
T ss_dssp GCCCSEEEEESC-EESEECTHHHHHCCCCSEEECTTSC-CCEECTTTT-TTCTTCCEEECCSSC-CCCCCT-TTTTTCTT
T ss_pred cCCceEEEecCC-chhhCChhHhcccccCcEEECCCCc-ccccChhhc-cCCCCcCEEECCCCC-CCcCCH-HHhcCCCC
Confidence 355555555554 2343333344555555555555542 222111111 125555555555542 222111 11124555
Q ss_pred ccEeeecccCCCCCCccccccCCCCCeeeecCCCCCChHHHHHHHhcCCCCCEEEccCCcccChhhHHHHHhcCCccceE
Q 012207 204 IRTLDLSYLPITEKCLPPVVKLQYLEDLVLEGCHGIDDDGLASVEYSCKSLKALNLSKCQNISHVGLSSLIKGADYLQQL 283 (468)
Q Consensus 204 L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L 283 (468)
|++|+++++.+.......+..+++|++|+++++ .+.......+.. +++|++|+++++.. .... ...+++|+.|
T Consensus 119 L~~L~L~~n~l~~l~~~~~~~l~~L~~L~L~~n-~l~~~~~~~~~~-l~~L~~L~l~~n~l-~~~~----~~~l~~L~~L 191 (390)
T 3o6n_A 119 LTVLVLERNDLSSLPRGIFHNTPKLTTLSMSNN-NLERIEDDTFQA-TTSLQNLQLSSNRL-THVD----LSLIPSLFHA 191 (390)
T ss_dssp CCEEECCSSCCCCCCTTTTTTCTTCCEEECCSS-CCCBCCTTTTSS-CTTCCEEECCSSCC-SBCC----GGGCTTCSEE
T ss_pred CCEEECCCCccCcCCHHHhcCCCCCcEEECCCC-ccCccChhhccC-CCCCCEEECCCCcC-Cccc----ccccccccee
Confidence 555555555554322222345555555555553 222222222222 55555555555442 1111 2334555555
Q ss_pred eecCCCCCchhHHHHhhcCCCCCeeEecCCcCChhHHHHHHHhCCCCCeEecccCCCCCHHHHHHHHHhCCCCCeEecCC
Q 012207 284 ILAYSFWVSADLSKCLHNFPMLQSIKFEDCPVARSGIKAIGNWHGSLKELSLSKCSGVTDEELSFVVQSHKELRKLDITC 363 (468)
Q Consensus 284 ~l~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~l~~~~~~L~~L~l~~~~~~~~~~l~~~~~~~~~L~~L~l~~ 363 (468)
+++++.. . .+...++|++|+++++.+..... ...++|+.|+++++ .+++. ..+..+++|++|++++
T Consensus 192 ~l~~n~l-~-----~~~~~~~L~~L~l~~n~l~~~~~----~~~~~L~~L~l~~n-~l~~~---~~l~~l~~L~~L~Ls~ 257 (390)
T 3o6n_A 192 NVSYNLL-S-----TLAIPIAVEELDASHNSINVVRG----PVNVELTILKLQHN-NLTDT---AWLLNYPGLVEVDLSY 257 (390)
T ss_dssp ECCSSCC-S-----EEECCSSCSEEECCSSCCCEEEC----CCCSSCCEEECCSS-CCCCC---GGGGGCTTCSEEECCS
T ss_pred ecccccc-c-----ccCCCCcceEEECCCCeeeeccc----cccccccEEECCCC-CCccc---HHHcCCCCccEEECCC
Confidence 5555421 1 11233455555555555443211 02345555555553 23321 1234455555555555
Q ss_pred CCCCCHHHHHHHHhcCCcCCeEEccCCCCCCHHHHHHHHhcCCCCCEEEccCCCCChhhHHhcccCCCCCEEeeCCCCcc
Q 012207 364 CRKITYASINSITKTCTSLTSLRMECCKLVSWEAFVLIGQQCQYLEELDITENEVNDEGLKSISRCSKLSSLKLGICSNI 443 (468)
Q Consensus 364 ~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~l 443 (468)
|. ++.... .....+++|++|+++++. ++.. ......+++|++|++++|.++... ..+..+++|+.|++++| .+
T Consensus 258 n~-l~~~~~-~~~~~l~~L~~L~L~~n~-l~~~--~~~~~~l~~L~~L~L~~n~l~~~~-~~~~~l~~L~~L~L~~N-~i 330 (390)
T 3o6n_A 258 NE-LEKIMY-HPFVKMQRLERLYISNNR-LVAL--NLYGQPIPTLKVLDLSHNHLLHVE-RNQPQFDRLENLYLDHN-SI 330 (390)
T ss_dssp SC-CCEEES-GGGTTCSSCCEEECCSSC-CCEE--ECSSSCCTTCCEEECCSSCCCCCG-GGHHHHTTCSEEECCSS-CC
T ss_pred Cc-CCCcCh-hHccccccCCEEECCCCc-Cccc--CcccCCCCCCCEEECCCCcceecC-ccccccCcCCEEECCCC-cc
Confidence 53 221111 111245555555555532 2221 111124455555555555554322 22334555555555555 44
Q ss_pred CHHHHHHHHhcCcccCeeecCCCC
Q 012207 444 TDEGLKHVGSTCSMLKELDLYRFS 467 (468)
Q Consensus 444 ~~~~~~~~~~~~~~L~~L~l~~c~ 467 (468)
+... ...+++|+.|++++|+
T Consensus 331 ~~~~----~~~~~~L~~L~l~~N~ 350 (390)
T 3o6n_A 331 VTLK----LSTHHTLKNLTLSHND 350 (390)
T ss_dssp CCCC----CCTTCCCSEEECCSSC
T ss_pred ceeC----chhhccCCEEEcCCCC
Confidence 4321 2345555555555554
|
| >3bz5_A Internalin-J, INLJ; leucine rich repeat (LRR), cysteine ladder, asparagine ladder, virulence factor, solenoid, cell WALL; 2.70A {Listeria monocytogenes} | Back alignment and structure |
|---|
Probab=99.83 E-value=7.1e-21 Score=178.41 Aligned_cols=303 Identities=19% Similarity=0.138 Sum_probs=205.7
Q ss_pred ccCCccEEecCCCCcccHHHHHHhhhcCCCCcEEEccCCCccCHHHHHHHHcCCCCCeEeccCCcccChHhHHHHHhcCC
Q 012207 97 WKLTLRSINLSRSRLFTKVGLSSLTVNCRFLTEIDLSNGTEMGDAAAAAIAEAKNLERLWLARCKLITDLGIGRIAACCR 176 (468)
Q Consensus 97 ~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~ 176 (468)
.+++|++|+++++. +... +.+ ..+++|++|+++++. ++..+ +..+++|++|+++++. ++... ...++
T Consensus 40 ~l~~L~~L~Ls~n~-l~~~--~~l-~~l~~L~~L~Ls~n~-l~~~~---~~~l~~L~~L~Ls~N~-l~~~~----~~~l~ 106 (457)
T 3bz5_A 40 QLATLTSLDCHNSS-ITDM--TGI-EKLTGLTKLICTSNN-ITTLD---LSQNTNLTYLACDSNK-LTNLD----VTPLT 106 (457)
T ss_dssp HHTTCCEEECCSSC-CCCC--TTG-GGCTTCSEEECCSSC-CSCCC---CTTCTTCSEEECCSSC-CSCCC----CTTCT
T ss_pred HcCCCCEEEccCCC-cccC--hhh-cccCCCCEEEccCCc-CCeEc---cccCCCCCEEECcCCC-Cceee----cCCCC
Confidence 45889999998864 3321 233 378899999998884 55432 6778889999998865 33332 23478
Q ss_pred CCcEEeccCCCCCChHHHHHHHhhCCCccEeeecccCCCCCCccccccCCCCCeeeecCCCCCChHHHHHHHhcCCCCCE
Q 012207 177 KLKLLCLKWCIRVTDLGVELVALKCQEIRTLDLSYLPITEKCLPPVVKLQYLEDLVLEGCHGIDDDGLASVEYSCKSLKA 256 (468)
Q Consensus 177 ~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~~L~~ 256 (468)
+|++|+++++ .++..+ ...+++|++|+++++.+... .+..+++|++|+++++..+.... +.. +++|+.
T Consensus 107 ~L~~L~L~~N-~l~~l~----~~~l~~L~~L~l~~N~l~~l---~l~~l~~L~~L~l~~n~~~~~~~---~~~-l~~L~~ 174 (457)
T 3bz5_A 107 KLTYLNCDTN-KLTKLD----VSQNPLLTYLNCARNTLTEI---DVSHNTQLTELDCHLNKKITKLD---VTP-QTQLTT 174 (457)
T ss_dssp TCCEEECCSS-CCSCCC----CTTCTTCCEEECTTSCCSCC---CCTTCTTCCEEECTTCSCCCCCC---CTT-CTTCCE
T ss_pred cCCEEECCCC-cCCeec----CCCCCcCCEEECCCCcccee---ccccCCcCCEEECCCCCcccccc---ccc-CCcCCE
Confidence 8888888886 344332 35778888888888877653 36678888888888865554432 333 788888
Q ss_pred EEccCCcccChhhHHHHHhcCCccceEeecCCCCCchhHHHHhhcCCCCCeeEecCCcCChhHHHHHHHhCCCCCeEecc
Q 012207 257 LNLSKCQNISHVGLSSLIKGADYLQQLILAYSFWVSADLSKCLHNFPMLQSIKFEDCPVARSGIKAIGNWHGSLKELSLS 336 (468)
Q Consensus 257 L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~l~~~~~~L~~L~l~ 336 (468)
|+++++.. .... +..+++|+.|+++++.. ... .+..+++|+.|++++|.+.... + ..+++|+.|+++
T Consensus 175 L~ls~n~l-~~l~----l~~l~~L~~L~l~~N~l-~~~---~l~~l~~L~~L~Ls~N~l~~ip---~-~~l~~L~~L~l~ 241 (457)
T 3bz5_A 175 LDCSFNKI-TELD----VSQNKLLNRLNCDTNNI-TKL---DLNQNIQLTFLDCSSNKLTEID---V-TPLTQLTYFDCS 241 (457)
T ss_dssp EECCSSCC-CCCC----CTTCTTCCEEECCSSCC-SCC---CCTTCTTCSEEECCSSCCSCCC---C-TTCTTCSEEECC
T ss_pred EECCCCcc-ceec----cccCCCCCEEECcCCcC-Cee---ccccCCCCCEEECcCCcccccC---c-cccCCCCEEEee
Confidence 88887753 2221 45667888888877643 222 3667788888888888776532 2 256788888887
Q ss_pred cCCCCCHHHHHHHHHhCCCCCeEecCCCCCCCHHHHHHHHhcCCcCCeEEccCCCCCCHHHHHHHHhcCCCCCEEEccCC
Q 012207 337 KCSGVTDEELSFVVQSHKELRKLDITCCRKITYASINSITKTCTSLTSLRMECCKLVSWEAFVLIGQQCQYLEELDITEN 416 (468)
Q Consensus 337 ~~~~~~~~~l~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~ 416 (468)
++ .++... ...+++|+.|++++ .+|+.|++++|....... ...|++|+.|++++|
T Consensus 242 ~N-~l~~~~----~~~l~~L~~L~l~~----------------n~L~~L~l~~n~~~~~~~----~~~l~~L~~L~Ls~n 296 (457)
T 3bz5_A 242 VN-PLTELD----VSTLSKLTTLHCIQ----------------TDLLEIDLTHNTQLIYFQ----AEGCRKIKELDVTHN 296 (457)
T ss_dssp SS-CCSCCC----CTTCTTCCEEECTT----------------CCCSCCCCTTCTTCCEEE----CTTCTTCCCCCCTTC
T ss_pred CC-cCCCcC----HHHCCCCCEEeccC----------------CCCCEEECCCCccCCccc----ccccccCCEEECCCC
Confidence 74 444321 34567777777654 357788888876544322 137899999999998
Q ss_pred CCChhhHH--------hcccCCCCCEEeeCCCCccCHHHHHHHHhcCcccCeeecCCCC
Q 012207 417 EVNDEGLK--------SISRCSKLSSLKLGICSNITDEGLKHVGSTCSMLKELDLYRFS 467 (468)
Q Consensus 417 ~~~~~~~~--------~l~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~~L~~L~l~~c~ 467 (468)
........ .++.+++|+.|++++| +++. +. ...+++|+.|++++|+
T Consensus 297 ~~l~~l~~~~~~L~~L~l~~~~~L~~L~L~~N-~l~~--l~--l~~l~~L~~L~l~~N~ 350 (457)
T 3bz5_A 297 TQLYLLDCQAAGITELDLSQNPKLVYLYLNNT-ELTE--LD--VSHNTKLKSLSCVNAH 350 (457)
T ss_dssp TTCCEEECTTCCCSCCCCTTCTTCCEEECTTC-CCSC--CC--CTTCTTCSEEECCSSC
T ss_pred cccceeccCCCcceEechhhcccCCEEECCCC-cccc--cc--cccCCcCcEEECCCCC
Confidence 53322111 2456789999999999 8886 32 4589999999999986
|
| >3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae} | Back alignment and structure |
|---|
Probab=99.82 E-value=3.7e-21 Score=187.45 Aligned_cols=307 Identities=17% Similarity=0.126 Sum_probs=132.7
Q ss_pred CCCCcEEEccCCCccCHHHHHHHHcCCCCCeEeccCCcccChHhHHHHHhcCCCCcEEeccCCCCCChHHHHHHHhhCCC
Q 012207 124 CRFLTEIDLSNGTEMGDAAAAAIAEAKNLERLWLARCKLITDLGIGRIAACCRKLKLLCLKWCIRVTDLGVELVALKCQE 203 (468)
Q Consensus 124 ~~~L~~L~l~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~ 203 (468)
+++++.++++++ .++..+...+..+++|++|++.++. +.......+. .+++|++|+++++. ++..+. ..+..+++
T Consensus 50 l~~l~~l~l~~~-~l~~lp~~~~~~l~~L~~L~L~~n~-l~~~~~~~~~-~l~~L~~L~L~~n~-l~~~~~-~~~~~l~~ 124 (597)
T 3oja_B 50 LNNQKIVTFKNS-TMRKLPAALLDSFRQVELLNLNDLQ-IEEIDTYAFA-YAHTIQKLYMGFNA-IRYLPP-HVFQNVPL 124 (597)
T ss_dssp GCCCSEEEESSC-EESEECTHHHHHCCCCSEEECTTSC-CCEECTTTTT-TCTTCCEEECCSSC-CCCCCT-TTTTTCTT
T ss_pred CCCceEEEeeCC-CCCCcCHHHHccCCCCcEEECCCCC-CCCCChHHhc-CCCCCCEEECCCCc-CCCCCH-HHHcCCCC
Confidence 345555555554 2333333444555555555555542 2221111111 25555555555542 222111 11124555
Q ss_pred ccEeeecccCCCCCCccccccCCCCCeeeecCCCCCChHHHHHHHhcCCCCCEEEccCCcccChhhHHHHHhcCCccceE
Q 012207 204 IRTLDLSYLPITEKCLPPVVKLQYLEDLVLEGCHGIDDDGLASVEYSCKSLKALNLSKCQNISHVGLSSLIKGADYLQQL 283 (468)
Q Consensus 204 L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L 283 (468)
|++|++++|.+.......+..+++|++|+++++ .+.......+.. +++|+.|+++++... ... ...+++|+.|
T Consensus 125 L~~L~L~~n~l~~l~~~~~~~l~~L~~L~Ls~N-~l~~~~~~~~~~-l~~L~~L~L~~N~l~-~~~----~~~l~~L~~L 197 (597)
T 3oja_B 125 LTVLVLERNDLSSLPRGIFHNTPKLTTLSMSNN-NLERIEDDTFQA-TTSLQNLQLSSNRLT-HVD----LSLIPSLFHA 197 (597)
T ss_dssp CCEEECCSSCCCCCCTTTTTTCTTCCEEECCSS-CCCBCCTTTTTT-CTTCCEEECTTSCCS-BCC----GGGCTTCSEE
T ss_pred CCEEEeeCCCCCCCCHHHhccCCCCCEEEeeCC-cCCCCChhhhhc-CCcCcEEECcCCCCC-CcC----hhhhhhhhhh
Confidence 555555555554333233345555555555553 232222222222 555555555554321 111 2334555555
Q ss_pred eecCCCCCchhHHHHhhcCCCCCeeEecCCcCChhHHHHHHHhCCCCCeEecccCCCCCHHHHHHHHHhCCCCCeEecCC
Q 012207 284 ILAYSFWVSADLSKCLHNFPMLQSIKFEDCPVARSGIKAIGNWHGSLKELSLSKCSGVTDEELSFVVQSHKELRKLDITC 363 (468)
Q Consensus 284 ~l~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~l~~~~~~L~~L~l~~~~~~~~~~l~~~~~~~~~L~~L~l~~ 363 (468)
+++++.. . .+...++|+.|++++|.+...... ..++|+.|+++++ .+++. ..+..+++|+.|++++
T Consensus 198 ~l~~n~l-~-----~l~~~~~L~~L~ls~n~l~~~~~~----~~~~L~~L~L~~n-~l~~~---~~l~~l~~L~~L~Ls~ 263 (597)
T 3oja_B 198 NVSYNLL-S-----TLAIPIAVEELDASHNSINVVRGP----VNVELTILKLQHN-NLTDT---AWLLNYPGLVEVDLSY 263 (597)
T ss_dssp ECCSSCC-S-----EEECCTTCSEEECCSSCCCEEECS----CCSCCCEEECCSS-CCCCC---GGGGGCTTCSEEECCS
T ss_pred hcccCcc-c-----cccCCchhheeeccCCcccccccc----cCCCCCEEECCCC-CCCCC---hhhccCCCCCEEECCC
Confidence 5555421 1 122334555555555554322110 1245555555553 23221 2233455555555555
Q ss_pred CCCCCHHHHHHHHhcCCcCCeEEccCCCCCCHHHHHHHHhcCCCCCEEEccCCCCChhhHHhcccCCCCCEEeeCCCCcc
Q 012207 364 CRKITYASINSITKTCTSLTSLRMECCKLVSWEAFVLIGQQCQYLEELDITENEVNDEGLKSISRCSKLSSLKLGICSNI 443 (468)
Q Consensus 364 ~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~l 443 (468)
|. ++.... ..+..+++|+.|++++|. ++. +......+++|+.|++++|.++... ..+..+++|+.|++++| .+
T Consensus 264 N~-l~~~~~-~~~~~l~~L~~L~Ls~N~-l~~--l~~~~~~l~~L~~L~Ls~N~l~~i~-~~~~~l~~L~~L~L~~N-~l 336 (597)
T 3oja_B 264 NE-LEKIMY-HPFVKMQRLERLYISNNR-LVA--LNLYGQPIPTLKVLDLSHNHLLHVE-RNQPQFDRLENLYLDHN-SI 336 (597)
T ss_dssp SC-CCEEES-GGGTTCSSCCEEECTTSC-CCE--EECSSSCCTTCCEEECCSSCCCCCG-GGHHHHTTCSEEECCSS-CC
T ss_pred Cc-cCCCCH-HHhcCccCCCEEECCCCC-CCC--CCcccccCCCCcEEECCCCCCCccC-cccccCCCCCEEECCCC-CC
Confidence 44 221111 111245555555555532 222 1111123455555555555554322 22344555555555555 44
Q ss_pred CHHHHHHHHhcCcccCeeecCCCC
Q 012207 444 TDEGLKHVGSTCSMLKELDLYRFS 467 (468)
Q Consensus 444 ~~~~~~~~~~~~~~L~~L~l~~c~ 467 (468)
+... ...+++|+.|++++|+
T Consensus 337 ~~~~----~~~~~~L~~L~l~~N~ 356 (597)
T 3oja_B 337 VTLK----LSTHHTLKNLTLSHND 356 (597)
T ss_dssp CCCC----CCTTCCCSEEECCSSC
T ss_pred CCcC----hhhcCCCCEEEeeCCC
Confidence 4321 2345555555555554
|
| >3a79_B TLR6, VLRB.59, TOLL-like receptor 6, variable lymphocyte recepto; diacyl lipopeptide, innate immunity, Leu repeat, cell membrane, cytoplasmic vesicle; HET: PXS NAG BMA NDG; 2.90A {Mus musculus} | Back alignment and structure |
|---|
Probab=99.82 E-value=3.6e-21 Score=186.63 Aligned_cols=372 Identities=15% Similarity=0.094 Sum_probs=211.9
Q ss_pred CCCCcEEecCCCCCCChhHHHhhhcccccCCccEEecCCCCcccHHHHHHhhhcCCCCcEEEccCCCccCHHHHHHHHcC
Q 012207 70 YPFITQLDLSLCPRANDDALSIVSSSSWKLTLRSINLSRSRLFTKVGLSSLTVNCRFLTEIDLSNGTEMGDAAAAAIAEA 149 (468)
Q Consensus 70 ~~~l~~l~l~~~~~~~~~~~~~l~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~l~~~ 149 (468)
+...+.++++++. +.. + +....+++++|+++++. +....... +..+++|++|+++++ .+......++..+
T Consensus 30 ~~~~~~l~ls~~~-L~~-----i-p~~~~~~L~~L~Ls~N~-i~~~~~~~-~~~l~~L~~L~Ls~N-~l~~~~~~~~~~l 99 (562)
T 3a79_B 30 NELESMVDYSNRN-LTH-----V-PKDLPPRTKALSLSQNS-ISELRMPD-ISFLSELRVLRLSHN-RIRSLDFHVFLFN 99 (562)
T ss_dssp ---CCEEECTTSC-CCS-----C-CTTSCTTCCEEECCSSC-CCCCCGGG-TTTCTTCCEEECCSC-CCCEECTTTTTTC
T ss_pred cCCCcEEEcCCCC-Ccc-----C-CCCCCCCcCEEECCCCC-ccccChhh-hccCCCccEEECCCC-CCCcCCHHHhCCC
Confidence 3445788888763 332 2 22234899999999875 33222223 348999999999998 4665555678889
Q ss_pred CCCCeEeccCCcccChHhHHHHHhcCCCCcEEeccCCCCCChHHHHHHHhhCCCccEeeecccCCCCCCccccccCCCCC
Q 012207 150 KNLERLWLARCKLITDLGIGRIAACCRKLKLLCLKWCIRVTDLGVELVALKCQEIRTLDLSYLPITEKCLPPVVKLQYLE 229 (468)
Q Consensus 150 ~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~ 229 (468)
++|++|+++++. ++..... .+++|++|+++++. ++..+....+..+++|++|+++++.+....+..+.++ +|+
T Consensus 100 ~~L~~L~Ls~N~-l~~lp~~----~l~~L~~L~Ls~N~-l~~l~~p~~~~~l~~L~~L~L~~n~l~~~~~~~l~~L-~L~ 172 (562)
T 3a79_B 100 QDLEYLDVSHNR-LQNISCC----PMASLRHLDLSFND-FDVLPVCKEFGNLTKLTFLGLSAAKFRQLDLLPVAHL-HLS 172 (562)
T ss_dssp TTCCEEECTTSC-CCEECSC----CCTTCSEEECCSSC-CSBCCCCGGGGGCTTCCEEEEECSBCCTTTTGGGTTS-CEE
T ss_pred CCCCEEECCCCc-CCccCcc----ccccCCEEECCCCC-ccccCchHhhcccCcccEEecCCCccccCchhhhhhc-eee
Confidence 999999999875 3332211 48999999999974 4443322334588999999999998876555544444 459
Q ss_pred eeeecCCCCC-ChHHHHHHH-------------------------hcCCCCCEEEccCCccc--ChhhHHHHHhcCCccc
Q 012207 230 DLVLEGCHGI-DDDGLASVE-------------------------YSCKSLKALNLSKCQNI--SHVGLSSLIKGADYLQ 281 (468)
Q Consensus 230 ~L~l~~~~~~-~~~~~~~l~-------------------------~~~~~L~~L~l~~~~~~--~~~~~~~~~~~~~~L~ 281 (468)
+|+++++... .......+. ..+++|+.++++++... ...+....+...++|+
T Consensus 173 ~L~L~~n~l~~~~~~~~~l~~l~~~~l~l~l~~n~~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~l~~~~~~l~~l~~L~ 252 (562)
T 3a79_B 173 CILLDLVSYHIKGGETESLQIPNTTVLHLVFHPNSLFSVQVNMSVNALGHLQLSNIKLNDENCQRLMTFLSELTRGPTLL 252 (562)
T ss_dssp EEEEEESSCCCCSSSCCEEEECCEEEEEEEECSSSCCCCCCEEEESSEEEEEEEEEECCSTTHHHHHHHHHHHHSCSSCE
T ss_pred EEEeecccccccccCcccccccCcceEEEEecCccchhhhhhhcccccceEEEecccccccccchHHHHHHHHhccCcce
Confidence 9999885320 111000111 12456677777665310 0112223456678888
Q ss_pred eEeecCCCCCchhHHHH--hhcCCCCCeeEecCCcCCh-------------------------------hHHHHHH----
Q 012207 282 QLILAYSFWVSADLSKC--LHNFPMLQSIKFEDCPVAR-------------------------------SGIKAIG---- 324 (468)
Q Consensus 282 ~L~l~~~~~~~~~~~~~--l~~~~~L~~L~l~~~~~~~-------------------------------~~~~~l~---- 324 (468)
.+++.++.......... ....++|++|++++|.+.+ ..+..+.
T Consensus 253 ~L~L~~~~l~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~ip~~~~~~~~~~L~~L~~~~~~~~~~~~p~~~~~~~~~~~~ 332 (562)
T 3a79_B 253 NVTLQHIETTWKCSVKLFQFFWPRPVEYLNIYNLTITERIDREEFTYSETALKSLMIEHVKNQVFLFSKEALYSVFAEMN 332 (562)
T ss_dssp EEEEEEEEECHHHHHHHHHHHTTSSEEEEEEEEEEECSCCCCCCCCCCSCSCCEEEEEEEEECCCSSCHHHHHHHHHTCC
T ss_pred EEEecCCcCcHHHHHHHHHhhhcccccEEEEeccEeeccccchhhhcccccchheehhhcccceeecChhhhhhhhccCc
Confidence 88887663322222111 1133478888887776442 1222221
Q ss_pred -----------------HhCCCCCeEecccCCCCCHHHHHHHHHhCCCCCeEecCCCCCCCH-HHHHHHHhcCCcCCeEE
Q 012207 325 -----------------NWHGSLKELSLSKCSGVTDEELSFVVQSHKELRKLDITCCRKITY-ASINSITKTCTSLTSLR 386 (468)
Q Consensus 325 -----------------~~~~~L~~L~l~~~~~~~~~~l~~~~~~~~~L~~L~l~~~~~~~~-~~~~~~~~~~~~L~~L~ 386 (468)
..+++|++|+++++ .+++. .+..+..+++|+.|++++|. ++. ..+......+++|+.|+
T Consensus 333 L~~L~l~~n~~~~~~~~~~l~~L~~L~l~~n-~l~~~-~~~~~~~l~~L~~L~L~~N~-l~~~~~~~~~~~~l~~L~~L~ 409 (562)
T 3a79_B 333 IKMLSISDTPFIHMVCPPSPSSFTFLNFTQN-VFTDS-VFQGCSTLKRLQTLILQRNG-LKNFFKVALMTKNMSSLETLD 409 (562)
T ss_dssp CSEEEEESSCCCCCCCCSSCCCCCEEECCSS-CCCTT-TTTTCCSCSSCCEEECCSSC-CCBTTHHHHTTTTCTTCCEEE
T ss_pred ceEEEccCCCcccccCccCCCCceEEECCCC-ccccc-hhhhhcccCCCCEEECCCCC-cCCcccchhhhcCCCCCCEEE
Confidence 23456666666653 33321 12223455666666666654 332 12222234566677777
Q ss_pred ccCCCCCCHHHHHHHHhcCCCCCEEEccCCCCChhhHHhcccCCCCCEEeeCCCCccCHHHHHHHHhcCcccCeeecCCC
Q 012207 387 MECCKLVSWEAFVLIGQQCQYLEELDITENEVNDEGLKSISRCSKLSSLKLGICSNITDEGLKHVGSTCSMLKELDLYRF 466 (468)
Q Consensus 387 l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~~L~~L~l~~c 466 (468)
++++. ++..........+++|+.|++++|.+++..+..+. ++|+.|++++| +++. ++.....+++|+.|++++|
T Consensus 410 l~~N~-l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~l~--~~L~~L~L~~N-~l~~--ip~~~~~l~~L~~L~L~~N 483 (562)
T 3a79_B 410 VSLNS-LNSHAYDRTCAWAESILVLNLSSNMLTGSVFRCLP--PKVKVLDLHNN-RIMS--IPKDVTHLQALQELNVASN 483 (562)
T ss_dssp CTTSC-CBSCCSSCCCCCCTTCCEEECCSSCCCGGGGSSCC--TTCSEEECCSS-CCCC--CCTTTTSSCCCSEEECCSS
T ss_pred CCCCc-CCCccChhhhcCcccCCEEECCCCCCCcchhhhhc--CcCCEEECCCC-cCcc--cChhhcCCCCCCEEECCCC
Confidence 76643 32211111122456677777777766654332221 57888888887 7763 3332236788888888877
Q ss_pred C
Q 012207 467 S 467 (468)
Q Consensus 467 ~ 467 (468)
+
T Consensus 484 ~ 484 (562)
T 3a79_B 484 Q 484 (562)
T ss_dssp C
T ss_pred C
Confidence 5
|
| >4g8a_A TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, immune system; HET: NAG LP4 LP5 DAO MYR KDO; 2.40A {Homo sapiens} PDB: 3fxi_A* | Back alignment and structure |
|---|
Probab=99.79 E-value=1.3e-21 Score=193.36 Aligned_cols=135 Identities=15% Similarity=0.100 Sum_probs=88.5
Q ss_pred hCCCCCeEecccCCCCCHHHHHHHHHhCCCCCeEecCCCCCCCHHHHHHHHhcCCcCCeEEccCCCCCCHHHHHHHHhcC
Q 012207 326 WHGSLKELSLSKCSGVTDEELSFVVQSHKELRKLDITCCRKITYASINSITKTCTSLTSLRMECCKLVSWEAFVLIGQQC 405 (468)
Q Consensus 326 ~~~~L~~L~l~~~~~~~~~~l~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~ 405 (468)
.+++++.++++.+ .+... ....+..++.|+.|++++|...... .......+++|++|++++|. ++......+. .+
T Consensus 443 ~l~~l~~l~ls~n-~l~~~-~~~~~~~~~~L~~L~Ls~N~~~~~~-~~~~~~~l~~L~~L~Ls~N~-L~~l~~~~f~-~l 517 (635)
T 4g8a_A 443 SLRNLIYLDISHT-HTRVA-FNGIFNGLSSLEVLKMAGNSFQENF-LPDIFTELRNLTFLDLSQCQ-LEQLSPTAFN-SL 517 (635)
T ss_dssp TCTTCCEEECTTS-CCEEC-CTTTTTTCTTCCEEECTTCEEGGGE-ECSCCTTCTTCCEEECTTSC-CCEECTTTTT-TC
T ss_pred ccccccccccccc-ccccc-cccccccchhhhhhhhhhccccccc-CchhhhhccccCEEECCCCc-cCCcChHHHc-CC
Confidence 4556666666653 22211 1223445678888888877532211 11223467899999999864 5433222333 78
Q ss_pred CCCCEEEccCCCCChhhHHhcccCCCCCEEeeCCCCccCHHHHHHHHhcC-cccCeeecCCCC
Q 012207 406 QYLEELDITENEVNDEGLKSISRCSKLSSLKLGICSNITDEGLKHVGSTC-SMLKELDLYRFS 467 (468)
Q Consensus 406 ~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~l~~~~~~~~~~~~-~~L~~L~l~~c~ 467 (468)
++|++|++++|.++......+..+++|+.|++++| +++......+ ..+ ++|+.|++++|+
T Consensus 518 ~~L~~L~Ls~N~l~~l~~~~~~~l~~L~~L~Ls~N-~l~~~~~~~l-~~l~~~L~~L~L~~Np 578 (635)
T 4g8a_A 518 SSLQVLNMSHNNFFSLDTFPYKCLNSLQVLDYSLN-HIMTSKKQEL-QHFPSSLAFLNLTQND 578 (635)
T ss_dssp TTCCEEECTTSCCCBCCCGGGTTCTTCCEEECTTS-CCCBCCSSCT-TCCCTTCCEEECTTCC
T ss_pred CCCCEEECCCCcCCCCChhHHhCCCCCCEEECCCC-cCCCCCHHHH-HhhhCcCCEEEeeCCC
Confidence 89999999999888877677888899999999999 7775322223 345 589999999887
|
| >3goz_A Leucine-rich repeat-containing protein; LEGL7, NESG, LGR148, structural genomics, PSI-2, protein structure initiative; 2.10A {Legionella pneumophila subsp} | Back alignment and structure |
|---|
Probab=99.78 E-value=1.2e-17 Score=152.31 Aligned_cols=257 Identities=15% Similarity=0.115 Sum_probs=162.3
Q ss_pred EeccCCCCCChHHHHHHHhhCCCccEeeecccCCCCCCc----cccccCC-CCCeeeecCCCCCChHHHHHHHh---c-C
Q 012207 181 LCLKWCIRVTDLGVELVALKCQEIRTLDLSYLPITEKCL----PPVVKLQ-YLEDLVLEGCHGIDDDGLASVEY---S-C 251 (468)
Q Consensus 181 L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~----~~l~~~~-~L~~L~l~~~~~~~~~~~~~l~~---~-~ 251 (468)
++++.+ .++. .++.+....++|++|++++|.+++... ..+..++ +|++|++++| .+.+.....+.. . +
T Consensus 3 ~~ls~n-~~~~-~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N-~l~~~~~~~l~~~l~~~~ 79 (362)
T 3goz_A 3 YKLTLH-PGSN-PVEEFTSIPHGVTSLDLSLNNLYSISTVELIQAFANTPASVTSLNLSGN-SLGFKNSDELVQILAAIP 79 (362)
T ss_dssp EECCCC-TTCC-HHHHHHTSCTTCCEEECTTSCGGGSCHHHHHHHHHTCCTTCCEEECCSS-CGGGSCHHHHHHHHHTSC
T ss_pred cccccc-cchH-HHHHHHhCCCCceEEEccCCCCChHHHHHHHHHHHhCCCceeEEECcCC-CCCHHHHHHHHHHHhccC
Confidence 345553 3433 234444455669999999998887776 5566777 8999999985 565544444443 1 2
Q ss_pred CCCCEEEccCCcccCh---hhHHHHHhcC-CccceEeecCCCCCchhHH----HHhhc-CCCCCeeEecCCcCChhHHHH
Q 012207 252 KSLKALNLSKCQNISH---VGLSSLIKGA-DYLQQLILAYSFWVSADLS----KCLHN-FPMLQSIKFEDCPVARSGIKA 322 (468)
Q Consensus 252 ~~L~~L~l~~~~~~~~---~~~~~~~~~~-~~L~~L~l~~~~~~~~~~~----~~l~~-~~~L~~L~l~~~~~~~~~~~~ 322 (468)
++|++|+++++. +++ ..+...+... ++|++|+++++. +..... ..+.. .++|++|++++|.+++.+...
T Consensus 80 ~~L~~L~Ls~n~-l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~-l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~~~ 157 (362)
T 3goz_A 80 ANVTSLNLSGNF-LSYKSSDELVKTLAAIPFTITVLDLGWND-FSSKSSSEFKQAFSNLPASITSLNLRGNDLGIKSSDE 157 (362)
T ss_dssp TTCCEEECCSSC-GGGSCHHHHHHHHHTSCTTCCEEECCSSC-GGGSCHHHHHHHHTTSCTTCCEEECTTSCGGGSCHHH
T ss_pred CCccEEECcCCc-CChHHHHHHHHHHHhCCCCccEEECcCCc-CCcHHHHHHHHHHHhCCCceeEEEccCCcCCHHHHHH
Confidence 889999999886 332 2333444555 788888888874 443333 33444 358888888888887655554
Q ss_pred HHH---hCC-CCCeEecccCCCCCHH---HHHHHHHhCC-CCCeEecCCCCCCCHHHHH---HHHhc-CCcCCeEEccCC
Q 012207 323 IGN---WHG-SLKELSLSKCSGVTDE---ELSFVVQSHK-ELRKLDITCCRKITYASIN---SITKT-CTSLTSLRMECC 390 (468)
Q Consensus 323 l~~---~~~-~L~~L~l~~~~~~~~~---~l~~~~~~~~-~L~~L~l~~~~~~~~~~~~---~~~~~-~~~L~~L~l~~~ 390 (468)
+.. ..+ +|++|++++| .+++. .+...+..++ +|++|++++|. +++.+.. ..... .++|++|++++|
T Consensus 158 l~~~l~~~~~~L~~L~Ls~n-~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~-i~~~~~~~l~~~l~~~~~~L~~L~Ls~N 235 (362)
T 3goz_A 158 LIQILAAIPANVNSLNLRGN-NLASKNCAELAKFLASIPASVTSLDLSANL-LGLKSYAELAYIFSSIPNHVVSLNLCLN 235 (362)
T ss_dssp HHHHHHTSCTTCCEEECTTS-CGGGSCHHHHHHHHHTSCTTCCEEECTTSC-GGGSCHHHHHHHHHHSCTTCCEEECCSS
T ss_pred HHHHHhcCCccccEeeecCC-CCchhhHHHHHHHHHhCCCCCCEEECCCCC-CChhHHHHHHHHHhcCCCCceEEECcCC
Confidence 432 333 8888888885 44432 3344455564 88888888876 5543322 22223 458888888885
Q ss_pred CCCCHHHH---HHHHhcCCCCCEEEccCCC---CChhhHHhc----ccCCCCCEEeeCCCCccCHH
Q 012207 391 KLVSWEAF---VLIGQQCQYLEELDITENE---VNDEGLKSI----SRCSKLSSLKLGICSNITDE 446 (468)
Q Consensus 391 ~~~~~~~~---~~~~~~~~~L~~L~l~~~~---~~~~~~~~l----~~~~~L~~L~l~~~~~l~~~ 446 (468)
. +++.+. ..+...+++|+.|++++|. +++.....+ ..+++|+.|++++| .+.+.
T Consensus 236 ~-l~~~~~~~l~~~~~~l~~L~~L~L~~n~l~~i~~~~~~~l~~~~~~l~~L~~LdL~~N-~l~~~ 299 (362)
T 3goz_A 236 C-LHGPSLENLKLLKDSLKHLQTVYLDYDIVKNMSKEQCKALGAAFPNIQKIILVDKNGK-EIHPS 299 (362)
T ss_dssp C-CCCCCHHHHHHTTTTTTTCSEEEEEHHHHTTCCHHHHHHHHTTSTTCCEEEEECTTSC-BCCGG
T ss_pred C-CCcHHHHHHHHHHhcCCCccEEEeccCCccccCHHHHHHHHHHhccCCceEEEecCCC-cCCCc
Confidence 3 655433 3333467788888888876 555444443 34667778888888 77654
|
| >2z80_A TOLL-like receptor 2, variable lymphocyte recepto; TLR2, lipopeptide, innate immunity, glycoprotein, immune RES inflammatory response; HET: NAG; 1.80A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.75 E-value=3.5e-19 Score=162.11 Aligned_cols=236 Identities=16% Similarity=0.094 Sum_probs=132.2
Q ss_pred hCCCccEeeecccCCCCCCccccccCCCCCeeeecCCCCCChHHHHHHHhcCCCCCEEEccCCcccChhhHHHHHhcCCc
Q 012207 200 KCQEIRTLDLSYLPITEKCLPPVVKLQYLEDLVLEGCHGIDDDGLASVEYSCKSLKALNLSKCQNISHVGLSSLIKGADY 279 (468)
Q Consensus 200 ~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~ 279 (468)
.+++|++|+++++.+.......+.++++|++|+++++ .+.......+.. +++|++|+++++... .......+..+++
T Consensus 74 ~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n-~l~~~~~~~~~~-l~~L~~L~L~~n~l~-~l~~~~~~~~l~~ 150 (353)
T 2z80_A 74 RCVNLQALVLTSNGINTIEEDSFSSLGSLEHLDLSYN-YLSNLSSSWFKP-LSSLTFLNLLGNPYK-TLGETSLFSHLTK 150 (353)
T ss_dssp TCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSS-CCSSCCHHHHTT-CTTCSEEECTTCCCS-SSCSSCSCTTCTT
T ss_pred cCCCCCEEECCCCccCccCHhhcCCCCCCCEEECCCC-cCCcCCHhHhCC-CccCCEEECCCCCCc-ccCchhhhccCCC
Confidence 4555555555555554433344555566666666552 333333222333 566666666655321 1100012344566
Q ss_pred cceEeecCCCCCchhHHHHhhcCCCCCeeEecCCcCChhHHHHHHHhCCCCCeEecccCCCCCHHHHHHHHHhCCCCCeE
Q 012207 280 LQQLILAYSFWVSADLSKCLHNFPMLQSIKFEDCPVARSGIKAIGNWHGSLKELSLSKCSGVTDEELSFVVQSHKELRKL 359 (468)
Q Consensus 280 L~~L~l~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~l~~~~~~L~~L~l~~~~~~~~~~l~~~~~~~~~L~~L 359 (468)
|++|+++++..+.......+..+++|++|++++|.+.......+. .+++|++|+++++ .++.. .......+++|+.|
T Consensus 151 L~~L~l~~n~~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~l~-~l~~L~~L~l~~n-~l~~~-~~~~~~~~~~L~~L 227 (353)
T 2z80_A 151 LQILRVGNMDTFTKIQRKDFAGLTFLEELEIDASDLQSYEPKSLK-SIQNVSHLILHMK-QHILL-LEIFVDVTSSVECL 227 (353)
T ss_dssp CCEEEEEESSSCCEECTTTTTTCCEEEEEEEEETTCCEECTTTTT-TCSEEEEEEEECS-CSTTH-HHHHHHHTTTEEEE
T ss_pred CcEEECCCCccccccCHHHccCCCCCCEEECCCCCcCccCHHHHh-ccccCCeecCCCC-ccccc-hhhhhhhcccccEE
Confidence 666666665434333344556667777777777666544333333 4567777777764 33322 12334456777777
Q ss_pred ecCCCCCCCHHHHHH--HHhcCCcCCeEEccCCCCCCHHHHHHH---HhcCCCCCEEEccCCCCChhhHHhcccCCCCCE
Q 012207 360 DITCCRKITYASINS--ITKTCTSLTSLRMECCKLVSWEAFVLI---GQQCQYLEELDITENEVNDEGLKSISRCSKLSS 434 (468)
Q Consensus 360 ~l~~~~~~~~~~~~~--~~~~~~~L~~L~l~~~~~~~~~~~~~~---~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~ 434 (468)
++++|. ++...... .....+.++.+++.++ .+++..+..+ ...+++|++|++++|.++......+..+++|+.
T Consensus 228 ~L~~n~-l~~~~~~~l~~~~~~~~l~~l~L~~~-~l~~~~l~~l~~~l~~l~~L~~L~Ls~N~l~~i~~~~~~~l~~L~~ 305 (353)
T 2z80_A 228 ELRDTD-LDTFHFSELSTGETNSLIKKFTFRNV-KITDESLFQVMKLLNQISGLLELEFSRNQLKSVPDGIFDRLTSLQK 305 (353)
T ss_dssp EEESCB-CTTCCCC------CCCCCCEEEEESC-BCCHHHHHHHHHHHHTCTTCCEEECCSSCCCCCCTTTTTTCTTCCE
T ss_pred ECCCCc-cccccccccccccccchhhccccccc-cccCcchhhhHHHHhcccCCCEEECCCCCCCccCHHHHhcCCCCCE
Confidence 777664 32211111 1124677888888874 4666544332 347889999999999888665444578899999
Q ss_pred EeeCCCCcc
Q 012207 435 LKLGICSNI 443 (468)
Q Consensus 435 L~l~~~~~l 443 (468)
|++++|+-.
T Consensus 306 L~L~~N~~~ 314 (353)
T 2z80_A 306 IWLHTNPWD 314 (353)
T ss_dssp EECCSSCBC
T ss_pred EEeeCCCcc
Confidence 999999433
|
| >1ogq_A PGIP-2, polygalacturonase inhibiting protein; inhibitor; HET: NAG; 1.7A {Phaseolus vulgaris} SCOP: c.10.2.8 | Back alignment and structure |
|---|
Probab=99.75 E-value=4.6e-21 Score=171.05 Aligned_cols=179 Identities=13% Similarity=0.183 Sum_probs=96.4
Q ss_pred cCCccceEeecCCCCCchhHHHHhhcCCCCCeeEecCCcCChhHHHHHHHhCC-CCCeEecccCCCCCHHHHHHHHHhCC
Q 012207 276 GADYLQQLILAYSFWVSADLSKCLHNFPMLQSIKFEDCPVARSGIKAIGNWHG-SLKELSLSKCSGVTDEELSFVVQSHK 354 (468)
Q Consensus 276 ~~~~L~~L~l~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~l~~~~~-~L~~L~l~~~~~~~~~~l~~~~~~~~ 354 (468)
.+++|++|+++++ .+....+..+..+++|++|++++|.+....+..+. .++ +|++|+++++ .++.. ++..+..++
T Consensus 123 ~l~~L~~L~Ls~N-~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~l~-~l~~~L~~L~L~~N-~l~~~-~~~~~~~l~ 198 (313)
T 1ogq_A 123 QIKTLVTLDFSYN-ALSGTLPPSISSLPNLVGITFDGNRISGAIPDSYG-SFSKLFTSMTISRN-RLTGK-IPPTFANLN 198 (313)
T ss_dssp GCTTCCEEECCSS-EEESCCCGGGGGCTTCCEEECCSSCCEEECCGGGG-CCCTTCCEEECCSS-EEEEE-CCGGGGGCC
T ss_pred CCCCCCEEeCCCC-ccCCcCChHHhcCCCCCeEECcCCcccCcCCHHHh-hhhhcCcEEECcCC-eeecc-CChHHhCCc
Confidence 3444555555444 22223333445555566666655555433333333 233 5666666553 22110 111223333
Q ss_pred CCCeEecCCCCCCCHHHHHHHHhcCCcCCeEEccCCCCCCHHHHHHHHhcCCCCCEEEccCCCCChhhHHhcccCCCCCE
Q 012207 355 ELRKLDITCCRKITYASINSITKTCTSLTSLRMECCKLVSWEAFVLIGQQCQYLEELDITENEVNDEGLKSISRCSKLSS 434 (468)
Q Consensus 355 ~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~ 434 (468)
|+.|++++|. ++.. .......+++|+.|+++++. ++.. ...+ ..+++|++|++++|.+++..+..+..+++|+.
T Consensus 199 -L~~L~Ls~N~-l~~~-~~~~~~~l~~L~~L~L~~N~-l~~~-~~~~-~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~ 272 (313)
T 1ogq_A 199 -LAFVDLSRNM-LEGD-ASVLFGSDKNTQKIHLAKNS-LAFD-LGKV-GLSKNLNGLDLRNNRIYGTLPQGLTQLKFLHS 272 (313)
T ss_dssp -CSEEECCSSE-EEEC-CGGGCCTTSCCSEEECCSSE-ECCB-GGGC-CCCTTCCEEECCSSCCEECCCGGGGGCTTCCE
T ss_pred -ccEEECcCCc-ccCc-CCHHHhcCCCCCEEECCCCc-eeee-cCcc-cccCCCCEEECcCCcccCcCChHHhcCcCCCE
Confidence 6666666654 2211 11122356777777777644 3211 1112 26678888888888887666667778888888
Q ss_pred EeeCCCCccCHHHHHHHHhcCcccCeeecCCCC
Q 012207 435 LKLGICSNITDEGLKHVGSTCSMLKELDLYRFS 467 (468)
Q Consensus 435 L~l~~~~~l~~~~~~~~~~~~~~L~~L~l~~c~ 467 (468)
|++++| .++.. ++.. ..+++|+.+++.+|+
T Consensus 273 L~Ls~N-~l~~~-ip~~-~~l~~L~~l~l~~N~ 302 (313)
T 1ogq_A 273 LNVSFN-NLCGE-IPQG-GNLQRFDVSAYANNK 302 (313)
T ss_dssp EECCSS-EEEEE-CCCS-TTGGGSCGGGTCSSS
T ss_pred EECcCC-ccccc-CCCC-ccccccChHHhcCCC
Confidence 888888 66632 2222 467888888888876
|
| >3goz_A Leucine-rich repeat-containing protein; LEGL7, NESG, LGR148, structural genomics, PSI-2, protein structure initiative; 2.10A {Legionella pneumophila subsp} | Back alignment and structure |
|---|
Probab=99.74 E-value=4.1e-17 Score=148.83 Aligned_cols=251 Identities=14% Similarity=0.127 Sum_probs=177.7
Q ss_pred HHHHHhcCCCCcEEeccCCCCCChHHH---HHHHhhCC-CccEeeecccCCCCCCccccccC-----CCCCeeeecCCCC
Q 012207 168 IGRIAACCRKLKLLCLKWCIRVTDLGV---ELVALKCQ-EIRTLDLSYLPITEKCLPPVVKL-----QYLEDLVLEGCHG 238 (468)
Q Consensus 168 ~~~~~~~~~~L~~L~l~~~~~~~~~~~---~~~~~~~~-~L~~L~l~~~~~~~~~~~~l~~~-----~~L~~L~l~~~~~ 238 (468)
+..+....++|++|+++++. +++.+. ......++ +|++|++++|.+++.....+..+ ++|++|++++| .
T Consensus 14 ~~~~~~~~~~L~~L~Ls~n~-l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~~~l~~~l~~~~~~L~~L~Ls~n-~ 91 (362)
T 3goz_A 14 VEEFTSIPHGVTSLDLSLNN-LYSISTVELIQAFANTPASVTSLNLSGNSLGFKNSDELVQILAAIPANVTSLNLSGN-F 91 (362)
T ss_dssp HHHHHTSCTTCCEEECTTSC-GGGSCHHHHHHHHHTCCTTCCEEECCSSCGGGSCHHHHHHHHHTSCTTCCEEECCSS-C
T ss_pred HHHHHhCCCCceEEEccCCC-CChHHHHHHHHHHHhCCCceeEEECcCCCCCHHHHHHHHHHHhccCCCccEEECcCC-c
Confidence 34445545679999999974 554433 23445677 89999999999988877777654 99999999995 4
Q ss_pred CChHHHHHHHh---cC-CCCCEEEccCCcccChhhHHH---HHhc-CCccceEeecCCCCCch----hHHHHhhcCC-CC
Q 012207 239 IDDDGLASVEY---SC-KSLKALNLSKCQNISHVGLSS---LIKG-ADYLQQLILAYSFWVSA----DLSKCLHNFP-ML 305 (468)
Q Consensus 239 ~~~~~~~~l~~---~~-~~L~~L~l~~~~~~~~~~~~~---~~~~-~~~L~~L~l~~~~~~~~----~~~~~l~~~~-~L 305 (468)
+.+.....+.. .+ ++|++|+++++. +++.+... .+.. .++|++|+++++ .+.+ .+...+...+ +|
T Consensus 92 l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~-l~~~~~~~l~~~l~~~~~~L~~L~Ls~N-~l~~~~~~~l~~~l~~~~~~L 169 (362)
T 3goz_A 92 LSYKSSDELVKTLAAIPFTITVLDLGWND-FSSKSSSEFKQAFSNLPASITSLNLRGN-DLGIKSSDELIQILAAIPANV 169 (362)
T ss_dssp GGGSCHHHHHHHHHTSCTTCCEEECCSSC-GGGSCHHHHHHHHTTSCTTCCEEECTTS-CGGGSCHHHHHHHHHTSCTTC
T ss_pred CChHHHHHHHHHHHhCCCCccEEECcCCc-CCcHHHHHHHHHHHhCCCceeEEEccCC-cCCHHHHHHHHHHHhcCCccc
Confidence 55444333332 24 899999999987 44443333 3444 469999999998 4442 4555667776 99
Q ss_pred CeeEecCCcCChhHHHHHHH---hC-CCCCeEecccCCCCCHHH---HHHHHHh-CCCCCeEecCCCCCCCHH---HHHH
Q 012207 306 QSIKFEDCPVARSGIKAIGN---WH-GSLKELSLSKCSGVTDEE---LSFVVQS-HKELRKLDITCCRKITYA---SINS 374 (468)
Q Consensus 306 ~~L~l~~~~~~~~~~~~l~~---~~-~~L~~L~l~~~~~~~~~~---l~~~~~~-~~~L~~L~l~~~~~~~~~---~~~~ 374 (468)
++|++++|.+++.....++. .+ ++|++|+++++ .+++.+ +...+.. .++|++|++++|. +++. .+..
T Consensus 170 ~~L~Ls~n~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N-~i~~~~~~~l~~~l~~~~~~L~~L~Ls~N~-l~~~~~~~l~~ 247 (362)
T 3goz_A 170 NSLNLRGNNLASKNCAELAKFLASIPASVTSLDLSAN-LLGLKSYAELAYIFSSIPNHVVSLNLCLNC-LHGPSLENLKL 247 (362)
T ss_dssp CEEECTTSCGGGSCHHHHHHHHHTSCTTCCEEECTTS-CGGGSCHHHHHHHHHHSCTTCCEEECCSSC-CCCCCHHHHHH
T ss_pred cEeeecCCCCchhhHHHHHHHHHhCCCCCCEEECCCC-CCChhHHHHHHHHHhcCCCCceEEECcCCC-CCcHHHHHHHH
Confidence 99999999988766655442 45 59999999985 565533 3344444 4699999999986 5553 3344
Q ss_pred HHhcCCcCCeEEccCCC--CCCHHHHHHHHh---cCCCCCEEEccCCCCChhhHH
Q 012207 375 ITKTCTSLTSLRMECCK--LVSWEAFVLIGQ---QCQYLEELDITENEVNDEGLK 424 (468)
Q Consensus 375 ~~~~~~~L~~L~l~~~~--~~~~~~~~~~~~---~~~~L~~L~l~~~~~~~~~~~ 424 (468)
....+++|+.|++++|. .++..++..+.. .+++|+.|++++|.+.+....
T Consensus 248 ~~~~l~~L~~L~L~~n~l~~i~~~~~~~l~~~~~~l~~L~~LdL~~N~l~~~~~~ 302 (362)
T 3goz_A 248 LKDSLKHLQTVYLDYDIVKNMSKEQCKALGAAFPNIQKIILVDKNGKEIHPSHSI 302 (362)
T ss_dssp TTTTTTTCSEEEEEHHHHTTCCHHHHHHHHTTSTTCCEEEEECTTSCBCCGGGCH
T ss_pred HHhcCCCccEEEeccCCccccCHHHHHHHHHHhccCCceEEEecCCCcCCCcchH
Confidence 44578999999999865 467776766654 456788899999999876333
|
| >1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein; HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A* 1xcd_A* | Back alignment and structure |
|---|
Probab=99.72 E-value=9.1e-19 Score=157.89 Aligned_cols=249 Identities=16% Similarity=0.120 Sum_probs=139.0
Q ss_pred hCCCccEeeecccCCCCCCccccccCCCCCeeeecCCCCCChHHHHHHHhcCCCCCEEEccCCcccChhhHHHHHhcCCc
Q 012207 200 KCQEIRTLDLSYLPITEKCLPPVVKLQYLEDLVLEGCHGIDDDGLASVEYSCKSLKALNLSKCQNISHVGLSSLIKGADY 279 (468)
Q Consensus 200 ~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~ 279 (468)
.+++|++|+++++.+.......+..+++|++|+++++ .+..... ...++|++|+++++... .. ....+..+++
T Consensus 74 ~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n-~l~~l~~----~~~~~L~~L~l~~n~l~-~~-~~~~~~~l~~ 146 (330)
T 1xku_A 74 NLKNLHTLILINNKISKISPGAFAPLVKLERLYLSKN-QLKELPE----KMPKTLQELRVHENEIT-KV-RKSVFNGLNQ 146 (330)
T ss_dssp TCTTCCEEECCSSCCCCBCTTTTTTCTTCCEEECCSS-CCSBCCS----SCCTTCCEEECCSSCCC-BB-CHHHHTTCTT
T ss_pred cCCCCCEEECCCCcCCeeCHHHhcCCCCCCEEECCCC-cCCccCh----hhcccccEEECCCCccc-cc-CHhHhcCCcc
Confidence 4455555555555544433444455555555555553 2221110 01245666666554321 11 1223445566
Q ss_pred cceEeecCCCCCc-hhHHHHhhcCCCCCeeEecCCcCChhHHHHHHHhCCCCCeEecccCCCCCHHHHHHHHHhCCCCCe
Q 012207 280 LQQLILAYSFWVS-ADLSKCLHNFPMLQSIKFEDCPVARSGIKAIGNWHGSLKELSLSKCSGVTDEELSFVVQSHKELRK 358 (468)
Q Consensus 280 L~~L~l~~~~~~~-~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~l~~~~~~L~~L~l~~~~~~~~~~l~~~~~~~~~L~~ 358 (468)
|+.|+++++.... ......+..+++|++|+++++.+..... . ..++|++|+++++ .++... ...+..+++|++
T Consensus 147 L~~L~l~~n~l~~~~~~~~~~~~l~~L~~L~l~~n~l~~l~~-~---~~~~L~~L~l~~n-~l~~~~-~~~~~~l~~L~~ 220 (330)
T 1xku_A 147 MIVVELGTNPLKSSGIENGAFQGMKKLSYIRIADTNITTIPQ-G---LPPSLTELHLDGN-KITKVD-AASLKGLNNLAK 220 (330)
T ss_dssp CCEEECCSSCCCGGGBCTTGGGGCTTCCEEECCSSCCCSCCS-S---CCTTCSEEECTTS-CCCEEC-TGGGTTCTTCCE
T ss_pred ccEEECCCCcCCccCcChhhccCCCCcCEEECCCCccccCCc-c---ccccCCEEECCCC-cCCccC-HHHhcCCCCCCE
Confidence 6666666553221 1233445667777777777776553211 0 2367888888774 344321 223456788888
Q ss_pred EecCCCCCCCHHHHHHHHhcCCcCCeEEccCCCCCCHHHHHHHHhcCCCCCEEEccCCCCChhhHHhccc------CCCC
Q 012207 359 LDITCCRKITYASINSITKTCTSLTSLRMECCKLVSWEAFVLIGQQCQYLEELDITENEVNDEGLKSISR------CSKL 432 (468)
Q Consensus 359 L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~------~~~L 432 (468)
|++++|. ++..... ....+++|++|++++|. ++ .+......+++|++|++++|.++..+...+.. .++|
T Consensus 221 L~Ls~n~-l~~~~~~-~~~~l~~L~~L~L~~N~-l~--~lp~~l~~l~~L~~L~l~~N~i~~~~~~~f~~~~~~~~~~~l 295 (330)
T 1xku_A 221 LGLSFNS-ISAVDNG-SLANTPHLRELHLNNNK-LV--KVPGGLADHKYIQVVYLHNNNISAIGSNDFCPPGYNTKKASY 295 (330)
T ss_dssp EECCSSC-CCEECTT-TGGGSTTCCEEECCSSC-CS--SCCTTTTTCSSCCEEECCSSCCCCCCTTSSSCSSCCTTSCCC
T ss_pred EECCCCc-CceeChh-hccCCCCCCEEECCCCc-Cc--cCChhhccCCCcCEEECCCCcCCccChhhcCCcccccccccc
Confidence 8888775 3322111 22467889999998864 44 12111237889999999999888876555542 4788
Q ss_pred CEEeeCCCCccCHHHH-HHHHhcCcccCeeecCCCC
Q 012207 433 SSLKLGICSNITDEGL-KHVGSTCSMLKELDLYRFS 467 (468)
Q Consensus 433 ~~L~l~~~~~l~~~~~-~~~~~~~~~L~~L~l~~c~ 467 (468)
+.|++++| .+....+ ......+++++.+++++|+
T Consensus 296 ~~l~l~~N-~~~~~~i~~~~f~~~~~l~~l~L~~N~ 330 (330)
T 1xku_A 296 SGVSLFSN-PVQYWEIQPSTFRCVYVRAAVQLGNYK 330 (330)
T ss_dssp SEEECCSS-SSCGGGSCGGGGTTCCCGGGEEC----
T ss_pred cceEeecC-cccccccCccccccccceeEEEecccC
Confidence 99999999 5543222 2334468899999999885
|
| >3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae} | Back alignment and structure |
|---|
Probab=99.71 E-value=4e-19 Score=158.93 Aligned_cols=243 Identities=13% Similarity=0.066 Sum_probs=130.6
Q ss_pred HHhcCCCCcEEeccCCCCCChHHHHHHHhhCCCccEeeecccCCCCCCccccccCCCCCeeeecCCCCCChHHHHHHHhc
Q 012207 171 IAACCRKLKLLCLKWCIRVTDLGVELVALKCQEIRTLDLSYLPITEKCLPPVVKLQYLEDLVLEGCHGIDDDGLASVEYS 250 (468)
Q Consensus 171 ~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~l~~~ 250 (468)
+...+++|++|+++++ .++..... .+..+++|++|++++|.+... ..+..+++|++|+++++ .+.... .
T Consensus 29 ~~~~~~~L~~L~L~~n-~l~~~~~~-~~~~l~~L~~L~Ls~n~l~~~--~~~~~l~~L~~L~Ls~n-~l~~l~-----~- 97 (317)
T 3o53_A 29 LRQSAWNVKELDLSGN-PLSQISAA-DLAPFTKLELLNLSSNVLYET--LDLESLSTLRTLDLNNN-YVQELL-----V- 97 (317)
T ss_dssp HHTTGGGCSEEECTTS-CCCCCCHH-HHTTCTTCCEEECTTSCCEEE--EEETTCTTCCEEECCSS-EEEEEE-----E-
T ss_pred HhccCCCCCEEECcCC-ccCcCCHH-HhhCCCcCCEEECCCCcCCcc--hhhhhcCCCCEEECcCC-cccccc-----C-
Confidence 3334556666666665 33332222 223566666666666655421 12555666666666653 222211 1
Q ss_pred CCCCCEEEccCCcccChhhHHHHHhcCCccceEeecCCCCCchhHHHHhhcCCCCCeeEecCCcCChhHHHHHHHhCCCC
Q 012207 251 CKSLKALNLSKCQNISHVGLSSLIKGADYLQQLILAYSFWVSADLSKCLHNFPMLQSIKFEDCPVARSGIKAIGNWHGSL 330 (468)
Q Consensus 251 ~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~l~~~~~~L 330 (468)
.++|++|+++++.. .. .. ...+++|+.|++++|.+.......+. .+++|
T Consensus 98 ~~~L~~L~l~~n~l-~~--------------------------~~---~~~~~~L~~L~l~~N~l~~~~~~~~~-~l~~L 146 (317)
T 3o53_A 98 GPSIETLHAANNNI-SR--------------------------VS---CSRGQGKKNIYLANNKITMLRDLDEG-CRSRV 146 (317)
T ss_dssp CTTCCEEECCSSCC-SE--------------------------EE---ECCCSSCEEEECCSSCCCSGGGBCTG-GGSSE
T ss_pred CCCcCEEECCCCcc-CC--------------------------cC---ccccCCCCEEECCCCCCCCccchhhh-ccCCC
Confidence 35555555555431 11 10 01234555555555554433222222 34556
Q ss_pred CeEecccCCCCCHHHHHHHHHhCCCCCeEecCCCCCCCHHHHHHHHhcCCcCCeEEccCCCCCCHHHHHHHHhcCCCCCE
Q 012207 331 KELSLSKCSGVTDEELSFVVQSHKELRKLDITCCRKITYASINSITKTCTSLTSLRMECCKLVSWEAFVLIGQQCQYLEE 410 (468)
Q Consensus 331 ~~L~l~~~~~~~~~~l~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~ 410 (468)
++|+++++ .++......+...+++|++|++++|. ++.. ... ..+++|++|++++|. ++.... .+ ..+++|+.
T Consensus 147 ~~L~Ls~N-~l~~~~~~~~~~~l~~L~~L~L~~N~-l~~~--~~~-~~l~~L~~L~Ls~N~-l~~l~~-~~-~~l~~L~~ 218 (317)
T 3o53_A 147 QYLDLKLN-EIDTVNFAELAASSDTLEHLNLQYNF-IYDV--KGQ-VVFAKLKTLDLSSNK-LAFMGP-EF-QSAAGVTW 218 (317)
T ss_dssp EEEECTTS-CCCEEEGGGGGGGTTTCCEEECTTSC-CCEE--ECC-CCCTTCCEEECCSSC-CCEECG-GG-GGGTTCSE
T ss_pred CEEECCCC-CCCcccHHHHhhccCcCCEEECCCCc-Cccc--ccc-cccccCCEEECCCCc-CCcchh-hh-cccCcccE
Confidence 66666553 33322222223345666666666654 2211 000 136778888887743 442211 12 36788999
Q ss_pred EEccCCCCChhhHHhcccCCCCCEEeeCCCCccCHHHHHHHHhcCcccCeeecCC
Q 012207 411 LDITENEVNDEGLKSISRCSKLSSLKLGICSNITDEGLKHVGSTCSMLKELDLYR 465 (468)
Q Consensus 411 L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~~L~~L~l~~ 465 (468)
|++++|.++... ..+..+++|+.|++++| .++...+..+...+++|+.+++.+
T Consensus 219 L~L~~N~l~~l~-~~~~~l~~L~~L~l~~N-~~~~~~~~~~~~~~~~L~~l~l~~ 271 (317)
T 3o53_A 219 ISLRNNKLVLIE-KALRFSQNLEHFDLRGN-GFHCGTLRDFFSKNQRVQTVAKQT 271 (317)
T ss_dssp EECTTSCCCEEC-TTCCCCTTCCEEECTTC-CCBHHHHHHHHHTCHHHHHHHHHH
T ss_pred EECcCCcccchh-hHhhcCCCCCEEEccCC-CccCcCHHHHHhccccceEEECCC
Confidence 999988888643 45667889999999998 777446666677788888777663
|
| >1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein; HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A* 1xcd_A* | Back alignment and structure |
|---|
Probab=99.71 E-value=3.1e-18 Score=154.41 Aligned_cols=266 Identities=17% Similarity=0.124 Sum_probs=185.7
Q ss_pred CCcEEeccCCCCCChHHHHHHHhhCCCccEeeecccCCCCCCccccccCCCCCeeeecCCCCCChHHHHHHHhcCCCCCE
Q 012207 177 KLKLLCLKWCIRVTDLGVELVALKCQEIRTLDLSYLPITEKCLPPVVKLQYLEDLVLEGCHGIDDDGLASVEYSCKSLKA 256 (468)
Q Consensus 177 ~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~~L~~ 256 (468)
+++.++++++ .++..+. ...++++.|+++++.+.......+.++++|++|+++++ .+.......+.. +++|++
T Consensus 32 ~l~~l~~~~~-~l~~lp~----~~~~~l~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n-~l~~~~~~~~~~-l~~L~~ 104 (330)
T 1xku_A 32 HLRVVQCSDL-GLEKVPK----DLPPDTALLDLQNNKITEIKDGDFKNLKNLHTLILINN-KISKISPGAFAP-LVKLER 104 (330)
T ss_dssp ETTEEECTTS-CCCSCCC----SCCTTCCEEECCSSCCCCBCTTTTTTCTTCCEEECCSS-CCCCBCTTTTTT-CTTCCE
T ss_pred CCeEEEecCC-CccccCc----cCCCCCeEEECCCCcCCEeChhhhccCCCCCEEECCCC-cCCeeCHHHhcC-CCCCCE
Confidence 5667766654 2322111 12368999999999887666667889999999999985 455443344554 899999
Q ss_pred EEccCCcccChhhHHHHHhcCCccceEeecCCCCCchhHHHHhhcCCCCCeeEecCCcCChhH--HHHHHHhCCCCCeEe
Q 012207 257 LNLSKCQNISHVGLSSLIKGADYLQQLILAYSFWVSADLSKCLHNFPMLQSIKFEDCPVARSG--IKAIGNWHGSLKELS 334 (468)
Q Consensus 257 L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~--~~~l~~~~~~L~~L~ 334 (468)
|+++++.. .... ....++|++|+++++ .+.......+..+++|+.|+++++.+...+ ...+ ..+++|++|+
T Consensus 105 L~Ls~n~l-~~l~----~~~~~~L~~L~l~~n-~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~-~~l~~L~~L~ 177 (330)
T 1xku_A 105 LYLSKNQL-KELP----EKMPKTLQELRVHEN-EITKVRKSVFNGLNQMIVVELGTNPLKSSGIENGAF-QGMKKLSYIR 177 (330)
T ss_dssp EECCSSCC-SBCC----SSCCTTCCEEECCSS-CCCBBCHHHHTTCTTCCEEECCSSCCCGGGBCTTGG-GGCTTCCEEE
T ss_pred EECCCCcC-CccC----hhhcccccEEECCCC-cccccCHhHhcCCccccEEECCCCcCCccCcChhhc-cCCCCcCEEE
Confidence 99998763 2211 112378999999987 455566677889999999999999886422 2223 3689999999
Q ss_pred cccCCCCCHHHHHHHHHhCCCCCeEecCCCCCCCHHHHHHHHhcCCcCCeEEccCCCCCCHHHHHHHHhcCCCCCEEEcc
Q 012207 335 LSKCSGVTDEELSFVVQSHKELRKLDITCCRKITYASINSITKTCTSLTSLRMECCKLVSWEAFVLIGQQCQYLEELDIT 414 (468)
Q Consensus 335 l~~~~~~~~~~l~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~ 414 (468)
++++ .++. ++. ...++|++|++++|. ++..... ....+++|++|+++++. ++......+. .+++|++|+++
T Consensus 178 l~~n-~l~~--l~~--~~~~~L~~L~l~~n~-l~~~~~~-~~~~l~~L~~L~Ls~n~-l~~~~~~~~~-~l~~L~~L~L~ 248 (330)
T 1xku_A 178 IADT-NITT--IPQ--GLPPSLTELHLDGNK-ITKVDAA-SLKGLNNLAKLGLSFNS-ISAVDNGSLA-NTPHLRELHLN 248 (330)
T ss_dssp CCSS-CCCS--CCS--SCCTTCSEEECTTSC-CCEECTG-GGTTCTTCCEEECCSSC-CCEECTTTGG-GSTTCCEEECC
T ss_pred CCCC-cccc--CCc--cccccCCEEECCCCc-CCccCHH-HhcCCCCCCEEECCCCc-CceeChhhcc-CCCCCCEEECC
Confidence 9985 4442 111 123799999999986 4433222 23478999999999854 5543322333 78999999999
Q ss_pred CCCCChhhHHhcccCCCCCEEeeCCCCccCHHHHHHHH-----hcCcccCeeecCCCC
Q 012207 415 ENEVNDEGLKSISRCSKLSSLKLGICSNITDEGLKHVG-----STCSMLKELDLYRFS 467 (468)
Q Consensus 415 ~~~~~~~~~~~l~~~~~L~~L~l~~~~~l~~~~~~~~~-----~~~~~L~~L~l~~c~ 467 (468)
+|.++.. +..+..+++|+.|++++| .++......+. ...++|+.|++.+|+
T Consensus 249 ~N~l~~l-p~~l~~l~~L~~L~l~~N-~i~~~~~~~f~~~~~~~~~~~l~~l~l~~N~ 304 (330)
T 1xku_A 249 NNKLVKV-PGGLADHKYIQVVYLHNN-NISAIGSNDFCPPGYNTKKASYSGVSLFSNP 304 (330)
T ss_dssp SSCCSSC-CTTTTTCSSCCEEECCSS-CCCCCCTTSSSCSSCCTTSCCCSEEECCSSS
T ss_pred CCcCccC-ChhhccCCCcCEEECCCC-cCCccChhhcCCcccccccccccceEeecCc
Confidence 9988854 345778999999999999 88754333221 135789999999986
|
| >4g8a_A TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, immune system; HET: NAG LP4 LP5 DAO MYR KDO; 2.40A {Homo sapiens} PDB: 3fxi_A* | Back alignment and structure |
|---|
Probab=99.71 E-value=2.4e-19 Score=177.16 Aligned_cols=140 Identities=16% Similarity=0.083 Sum_probs=97.1
Q ss_pred HhhcCCCCCeeEecCCcCChhHHHHHHHhCCCCCeEecccCCCCCHHHHHHHHHhCCCCCeEecCCCCCCCHHHHHHHHh
Q 012207 298 CLHNFPMLQSIKFEDCPVARSGIKAIGNWHGSLKELSLSKCSGVTDEELSFVVQSHKELRKLDITCCRKITYASINSITK 377 (468)
Q Consensus 298 ~l~~~~~L~~L~l~~~~~~~~~~~~l~~~~~~L~~L~l~~~~~~~~~~l~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~ 377 (468)
.+..+++++.++++.+.+.......+. .++.++.|+++++.... ...+..+..+++|+.|++++|. ++.... ..+.
T Consensus 440 ~~~~l~~l~~l~ls~n~l~~~~~~~~~-~~~~L~~L~Ls~N~~~~-~~~~~~~~~l~~L~~L~Ls~N~-L~~l~~-~~f~ 515 (635)
T 4g8a_A 440 VFLSLRNLIYLDISHTHTRVAFNGIFN-GLSSLEVLKMAGNSFQE-NFLPDIFTELRNLTFLDLSQCQ-LEQLSP-TAFN 515 (635)
T ss_dssp TTTTCTTCCEEECTTSCCEECCTTTTT-TCTTCCEEECTTCEEGG-GEECSCCTTCTTCCEEECTTSC-CCEECT-TTTT
T ss_pred ccccccccccccccccccccccccccc-cchhhhhhhhhhccccc-ccCchhhhhccccCEEECCCCc-cCCcCh-HHHc
Confidence 355667888888887765433322222 67899999999853222 1122335577999999999986 443221 2235
Q ss_pred cCCcCCeEEccCCCCCCHHHHHHHHhcCCCCCEEEccCCCCChhhHHhcccC-CCCCEEeeCCCCcc
Q 012207 378 TCTSLTSLRMECCKLVSWEAFVLIGQQCQYLEELDITENEVNDEGLKSISRC-SKLSSLKLGICSNI 443 (468)
Q Consensus 378 ~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~-~~L~~L~l~~~~~l 443 (468)
++++|++|+++++. ++......+. .+++|++|++++|.++......+..+ ++|+.|++++|+-.
T Consensus 516 ~l~~L~~L~Ls~N~-l~~l~~~~~~-~l~~L~~L~Ls~N~l~~~~~~~l~~l~~~L~~L~L~~Np~~ 580 (635)
T 4g8a_A 516 SLSSLQVLNMSHNN-FFSLDTFPYK-CLNSLQVLDYSLNHIMTSKKQELQHFPSSLAFLNLTQNDFA 580 (635)
T ss_dssp TCTTCCEEECTTSC-CCBCCCGGGT-TCTTCCEEECTTSCCCBCCSSCTTCCCTTCCEEECTTCCBC
T ss_pred CCCCCCEEECCCCc-CCCCChhHHh-CCCCCCEEECCCCcCCCCCHHHHHhhhCcCCEEEeeCCCCc
Confidence 78999999999854 5432222233 78999999999999998877777777 58999999988444
|
| >2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like receptor, MD-2, LPS, leucine-rich repeat, glycoprotein, immune response; HET: NAG BMA FUL; 1.90A {Eptatretus burgeri} | Back alignment and structure |
|---|
Probab=99.70 E-value=2.9e-19 Score=159.35 Aligned_cols=231 Identities=19% Similarity=0.119 Sum_probs=138.3
Q ss_pred CCccEeeecccCCCCCCccccccCCCCCeeeecCCCCCChHH--HHHHHhcCCCCCEEEccCCcccChhhHHHHHhcCCc
Q 012207 202 QEIRTLDLSYLPITEKCLPPVVKLQYLEDLVLEGCHGIDDDG--LASVEYSCKSLKALNLSKCQNISHVGLSSLIKGADY 279 (468)
Q Consensus 202 ~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~--~~~l~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~ 279 (468)
++|++|+++++.+.......+.++++|++|+++++ .+.... ...+.. +++|++|+++++..... ...+..+++
T Consensus 28 ~~l~~L~L~~n~l~~i~~~~~~~l~~L~~L~L~~n-~l~~~~~~~~~~~~-~~~L~~L~Ls~n~i~~l---~~~~~~l~~ 102 (306)
T 2z66_A 28 SSATRLELESNKLQSLPHGVFDKLTQLTKLSLSSN-GLSFKGCCSQSDFG-TTSLKYLDLSFNGVITM---SSNFLGLEQ 102 (306)
T ss_dssp TTCCEEECCSSCCCCCCTTTTTTCTTCSEEECCSS-CCCEEEEEEHHHHS-CSCCCEEECCSCSEEEE---EEEEETCTT
T ss_pred CCCCEEECCCCccCccCHhHhhccccCCEEECCCC-ccCcccCccccccc-ccccCEEECCCCccccC---hhhcCCCCC
Confidence 46666777666655433334556677777777663 333211 122233 67777777776642211 111344667
Q ss_pred cceEeecCCCCCchhHHHHhhcCCCCCeeEecCCcCChhHHHHHHHhCCCCCeEecccCCCCCHHHHHHHHHhCCCCCeE
Q 012207 280 LQQLILAYSFWVSADLSKCLHNFPMLQSIKFEDCPVARSGIKAIGNWHGSLKELSLSKCSGVTDEELSFVVQSHKELRKL 359 (468)
Q Consensus 280 L~~L~l~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~l~~~~~~L~~L~l~~~~~~~~~~l~~~~~~~~~L~~L 359 (468)
|++|+++++..........+..+++|++|++++|.+.......+. .+++|++|+++++ .+++..++..+..+++|++|
T Consensus 103 L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~-~l~~L~~L~l~~n-~l~~~~~~~~~~~l~~L~~L 180 (306)
T 2z66_A 103 LEHLDFQHSNLKQMSEFSVFLSLRNLIYLDISHTHTRVAFNGIFN-GLSSLEVLKMAGN-SFQENFLPDIFTELRNLTFL 180 (306)
T ss_dssp CCEEECTTSEEESSTTTTTTTTCTTCCEEECTTSCCEECSTTTTT-TCTTCCEEECTTC-EEGGGEECSCCTTCTTCCEE
T ss_pred CCEEECCCCcccccccchhhhhccCCCEEECCCCcCCccchhhcc-cCcCCCEEECCCC-ccccccchhHHhhCcCCCEE
Confidence 777777765322211123466777888888887776543333332 5678888888774 33321123334567888888
Q ss_pred ecCCCCCCCHHHHHHHHhcCCcCCeEEccCCCCCCHHHHHHHHhcCCCCCEEEccCCCCChhhHHhcccCC-CCCEEeeC
Q 012207 360 DITCCRKITYASINSITKTCTSLTSLRMECCKLVSWEAFVLIGQQCQYLEELDITENEVNDEGLKSISRCS-KLSSLKLG 438 (468)
Q Consensus 360 ~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~-~L~~L~l~ 438 (468)
++++|. ++.... .....+++|++|+++++. ++......+ ..+++|+.|++++|.+++.....+..++ +|+.|+++
T Consensus 181 ~Ls~n~-l~~~~~-~~~~~l~~L~~L~L~~N~-l~~~~~~~~-~~l~~L~~L~L~~N~l~~~~~~~~~~~~~~L~~L~L~ 256 (306)
T 2z66_A 181 DLSQCQ-LEQLSP-TAFNSLSSLQVLNMSHNN-FFSLDTFPY-KCLNSLQVLDYSLNHIMTSKKQELQHFPSSLAFLNLT 256 (306)
T ss_dssp ECTTSC-CCEECT-TTTTTCTTCCEEECTTSC-CSBCCSGGG-TTCTTCCEEECTTSCCCBCSSSSCCCCCTTCCEEECT
T ss_pred ECCCCC-cCCcCH-HHhcCCCCCCEEECCCCc-cCccChhhc-cCcccCCEeECCCCCCcccCHHHHHhhhccCCEEEcc
Confidence 888875 332211 122467889999998854 433222222 3788999999999998887767777775 89999999
Q ss_pred CCCccC
Q 012207 439 ICSNIT 444 (468)
Q Consensus 439 ~~~~l~ 444 (468)
+| .++
T Consensus 257 ~N-~~~ 261 (306)
T 2z66_A 257 QN-DFA 261 (306)
T ss_dssp TC-CEE
T ss_pred CC-Cee
Confidence 99 553
|
| >3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.69 E-value=2.3e-18 Score=161.57 Aligned_cols=226 Identities=15% Similarity=0.118 Sum_probs=111.6
Q ss_pred CCccEeeecccCCCCCCccccccCCCCCeeeecCCCCCChHHHHHHHhcCCCCCEEEccCCcccChhhHHHHHhcCCccc
Q 012207 202 QEIRTLDLSYLPITEKCLPPVVKLQYLEDLVLEGCHGIDDDGLASVEYSCKSLKALNLSKCQNISHVGLSSLIKGADYLQ 281 (468)
Q Consensus 202 ~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~ 281 (468)
++++.|+++++.+.......+.++++|++|+++++ .+.......+.. +++|++|+++++.. .... ...+..+++|+
T Consensus 64 ~~l~~L~L~~n~i~~~~~~~~~~l~~L~~L~Ls~n-~i~~i~~~~~~~-l~~L~~L~L~~n~l-~~~~-~~~~~~l~~L~ 139 (440)
T 3zyj_A 64 TNTRLLNLHENQIQIIKVNSFKHLRHLEILQLSRN-HIRTIEIGAFNG-LANLNTLELFDNRL-TTIP-NGAFVYLSKLK 139 (440)
T ss_dssp TTCSEEECCSCCCCEECTTTTSSCSSCCEEECCSS-CCCEECGGGGTT-CSSCCEEECCSSCC-SSCC-TTTSCSCSSCC
T ss_pred CCCcEEEccCCcCCeeCHHHhhCCCCCCEEECCCC-cCCccChhhccC-CccCCEEECCCCcC-CeeC-HhHhhccccCc
Confidence 45666666666555444455556666666666663 333332223333 56666666665532 1110 01133455666
Q ss_pred eEeecCCCCCchhHHHHhhcCCCCCeeEecCCcCChhHHHHHHHhCCCCCeEecccCCCCCHHHHHHHHHhCCCCCeEec
Q 012207 282 QLILAYSFWVSADLSKCLHNFPMLQSIKFEDCPVARSGIKAIGNWHGSLKELSLSKCSGVTDEELSFVVQSHKELRKLDI 361 (468)
Q Consensus 282 ~L~l~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~l~~~~~~L~~L~l~~~~~~~~~~l~~~~~~~~~L~~L~l 361 (468)
.|+++++. +.......+..+++|++|++.++.............+++|++|+++++ .++. ++. +..+++|+.|++
T Consensus 140 ~L~L~~N~-i~~~~~~~~~~l~~L~~L~l~~~~~l~~i~~~~~~~l~~L~~L~L~~n-~l~~--~~~-~~~l~~L~~L~L 214 (440)
T 3zyj_A 140 ELWLRNNP-IESIPSYAFNRIPSLRRLDLGELKRLSYISEGAFEGLSNLRYLNLAMC-NLRE--IPN-LTPLIKLDELDL 214 (440)
T ss_dssp EEECCSCC-CCEECTTTTTTCTTCCEEECCCCTTCCEECTTTTTTCSSCCEEECTTS-CCSS--CCC-CTTCSSCCEEEC
T ss_pred eeeCCCCc-ccccCHHHhhhCcccCEeCCCCCCCcceeCcchhhcccccCeecCCCC-cCcc--ccc-cCCCcccCEEEC
Confidence 66666552 332333345566777777777643221111111124566777777664 3331 111 234456666666
Q ss_pred CCCCCCCHHHHHHHHhcCCcCCeEEccCCCCCCHHHHHHHHhcCCCCCEEEccCCCCChhhHHhcccCCCCCEEeeCCC
Q 012207 362 TCCRKITYASINSITKTCTSLTSLRMECCKLVSWEAFVLIGQQCQYLEELDITENEVNDEGLKSISRCSKLSSLKLGIC 440 (468)
Q Consensus 362 ~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~ 440 (468)
++|. ++.... ..+..+++|+.|+++++. ++......+. .+++|+.|++++|.++......+..+++|+.|++++|
T Consensus 215 s~N~-l~~~~~-~~~~~l~~L~~L~L~~n~-l~~~~~~~~~-~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N 289 (440)
T 3zyj_A 215 SGNH-LSAIRP-GSFQGLMHLQKLWMIQSQ-IQVIERNAFD-NLQSLVEINLAHNNLTLLPHDLFTPLHHLERIHLHHN 289 (440)
T ss_dssp TTSC-CCEECT-TTTTTCTTCCEEECTTCC-CCEECTTSST-TCTTCCEEECTTSCCCCCCTTTTSSCTTCCEEECCSS
T ss_pred CCCc-cCccCh-hhhccCccCCEEECCCCc-eeEEChhhhc-CCCCCCEEECCCCCCCccChhHhccccCCCEEEcCCC
Confidence 6654 322111 112345666666665532 3322222222 4566666666666665554444555566666666655
|
| >3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A | Back alignment and structure |
|---|
Probab=99.69 E-value=2.5e-18 Score=161.91 Aligned_cols=226 Identities=18% Similarity=0.105 Sum_probs=108.9
Q ss_pred CCccEeeecccCCCCCCccccccCCCCCeeeecCCCCCChHHHHHHHhcCCCCCEEEccCCcccChhhHHHHHhcCCccc
Q 012207 202 QEIRTLDLSYLPITEKCLPPVVKLQYLEDLVLEGCHGIDDDGLASVEYSCKSLKALNLSKCQNISHVGLSSLIKGADYLQ 281 (468)
Q Consensus 202 ~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~ 281 (468)
++++.|+++++.+.......+.++++|++|+++++ .+.......+.. +++|++|+++++.. .... ...+..+++|+
T Consensus 75 ~~l~~L~L~~n~i~~~~~~~~~~l~~L~~L~Ls~n-~i~~~~~~~~~~-l~~L~~L~L~~n~l-~~~~-~~~~~~l~~L~ 150 (452)
T 3zyi_A 75 SNTRYLNLMENNIQMIQADTFRHLHHLEVLQLGRN-SIRQIEVGAFNG-LASLNTLELFDNWL-TVIP-SGAFEYLSKLR 150 (452)
T ss_dssp TTCSEEECCSSCCCEECTTTTTTCTTCCEEECCSS-CCCEECTTTTTT-CTTCCEEECCSSCC-SBCC-TTTSSSCTTCC
T ss_pred CCccEEECcCCcCceECHHHcCCCCCCCEEECCCC-ccCCcChhhccC-cccCCEEECCCCcC-CccC-hhhhcccCCCC
Confidence 35555555555554444444555566666666553 333322222332 55566666655431 1100 11123445566
Q ss_pred eEeecCCCCCchhHHHHhhcCCCCCeeEecCCcCChhHHHHHHHhCCCCCeEecccCCCCCHHHHHHHHHhCCCCCeEec
Q 012207 282 QLILAYSFWVSADLSKCLHNFPMLQSIKFEDCPVARSGIKAIGNWHGSLKELSLSKCSGVTDEELSFVVQSHKELRKLDI 361 (468)
Q Consensus 282 ~L~l~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~l~~~~~~L~~L~l~~~~~~~~~~l~~~~~~~~~L~~L~l 361 (468)
+|+++++. +.......+..+++|+.|++.++.............+++|++|+++++ .++. ++ .+..+++|+.|++
T Consensus 151 ~L~L~~N~-l~~~~~~~~~~l~~L~~L~l~~~~~l~~i~~~~~~~l~~L~~L~L~~n-~l~~--~~-~~~~l~~L~~L~L 225 (452)
T 3zyi_A 151 ELWLRNNP-IESIPSYAFNRVPSLMRLDLGELKKLEYISEGAFEGLFNLKYLNLGMC-NIKD--MP-NLTPLVGLEELEM 225 (452)
T ss_dssp EEECCSCC-CCEECTTTTTTCTTCCEEECCCCTTCCEECTTTTTTCTTCCEEECTTS-CCSS--CC-CCTTCTTCCEEEC
T ss_pred EEECCCCC-cceeCHhHHhcCCcccEEeCCCCCCccccChhhccCCCCCCEEECCCC-cccc--cc-cccccccccEEEC
Confidence 66665552 222223345567777777777643221111111124567777777664 3332 11 1334556666666
Q ss_pred CCCCCCCHHHHHHHHhcCCcCCeEEccCCCCCCHHHHHHHHhcCCCCCEEEccCCCCChhhHHhcccCCCCCEEeeCCC
Q 012207 362 TCCRKITYASINSITKTCTSLTSLRMECCKLVSWEAFVLIGQQCQYLEELDITENEVNDEGLKSISRCSKLSSLKLGIC 440 (468)
Q Consensus 362 ~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~ 440 (468)
++|. ++.... ..+..+++|+.|+++++. ++......+. .+++|+.|++++|.++......+..+++|+.|++++|
T Consensus 226 s~N~-l~~~~~-~~~~~l~~L~~L~L~~n~-l~~~~~~~~~-~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N 300 (452)
T 3zyi_A 226 SGNH-FPEIRP-GSFHGLSSLKKLWVMNSQ-VSLIERNAFD-GLASLVELNLAHNNLSSLPHDLFTPLRYLVELHLHHN 300 (452)
T ss_dssp TTSC-CSEECG-GGGTTCTTCCEEECTTSC-CCEECTTTTT-TCTTCCEEECCSSCCSCCCTTSSTTCTTCCEEECCSS
T ss_pred cCCc-CcccCc-ccccCccCCCEEEeCCCc-CceECHHHhc-CCCCCCEEECCCCcCCccChHHhccccCCCEEEccCC
Confidence 6654 222111 112345666666666533 3322222222 5566666666666665544444555666666666665
|
| >2ft3_A Biglycan; proteoglycan, dimer interface, structural protein, signaling; HET: NAG FLC; 3.40A {Bos taurus} | Back alignment and structure |
|---|
Probab=99.69 E-value=4.6e-19 Score=159.87 Aligned_cols=268 Identities=13% Similarity=0.103 Sum_probs=130.3
Q ss_pred CCCcEEEccCCCccCHHHHHHHHcCCCCCeEeccCCcccChHhHHHHHhcCCCCcEEeccCCCCCChHHHHHHHhhCCCc
Q 012207 125 RFLTEIDLSNGTEMGDAAAAAIAEAKNLERLWLARCKLITDLGIGRIAACCRKLKLLCLKWCIRVTDLGVELVALKCQEI 204 (468)
Q Consensus 125 ~~L~~L~l~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L 204 (468)
++|+.|+++++ .+.......+..+++|++|+++++. ++......+ ..+++|++|+++++. ++..+. ...++|
T Consensus 54 ~~l~~L~l~~n-~i~~~~~~~~~~l~~L~~L~L~~n~-l~~~~~~~~-~~l~~L~~L~L~~n~-l~~l~~----~~~~~L 125 (332)
T 2ft3_A 54 PDTTLLDLQNN-DISELRKDDFKGLQHLYALVLVNNK-ISKIHEKAF-SPLRKLQKLYISKNH-LVEIPP----NLPSSL 125 (332)
T ss_dssp TTCCEEECCSS-CCCEECTTTTTTCTTCCEEECCSSC-CCEECGGGS-TTCTTCCEEECCSSC-CCSCCS----SCCTTC
T ss_pred CCCeEEECCCC-cCCccCHhHhhCCCCCcEEECCCCc-cCccCHhHh-hCcCCCCEEECCCCc-CCccCc----cccccC
Confidence 45666666655 2333332345556666666666543 222211112 225666666666542 222111 022677
Q ss_pred cEeeecccCCCCCCccccccCCCCCeeeecCCCCCChH--HHHHHHhcCCCCCEEEccCCcccChhhHHHHHhcCCccce
Q 012207 205 RTLDLSYLPITEKCLPPVVKLQYLEDLVLEGCHGIDDD--GLASVEYSCKSLKALNLSKCQNISHVGLSSLIKGADYLQQ 282 (468)
Q Consensus 205 ~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~--~~~~l~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~ 282 (468)
++|+++++.+.......+..+++|++|+++++ .+... ....+.. + +|+.|+++++.... .. ....++|++
T Consensus 126 ~~L~l~~n~i~~~~~~~~~~l~~L~~L~l~~n-~l~~~~~~~~~~~~-l-~L~~L~l~~n~l~~-l~----~~~~~~L~~ 197 (332)
T 2ft3_A 126 VELRIHDNRIRKVPKGVFSGLRNMNCIEMGGN-PLENSGFEPGAFDG-L-KLNYLRISEAKLTG-IP----KDLPETLNE 197 (332)
T ss_dssp CEEECCSSCCCCCCSGGGSSCSSCCEEECCSC-CCBGGGSCTTSSCS-C-CCSCCBCCSSBCSS-CC----SSSCSSCSC
T ss_pred CEEECCCCccCccCHhHhCCCccCCEEECCCC-ccccCCCCcccccC-C-ccCEEECcCCCCCc-cC----ccccCCCCE
Confidence 77777777766554455667777777777774 33221 1111111 2 56666666554211 00 001134555
Q ss_pred EeecCCCCCchhHHHHhhcCCCCCeeEecCCcCChhHHHHHHHhCCCCCeEecccCCCCCHHHHHHHHHhCCCCCeEecC
Q 012207 283 LILAYSFWVSADLSKCLHNFPMLQSIKFEDCPVARSGIKAIGNWHGSLKELSLSKCSGVTDEELSFVVQSHKELRKLDIT 362 (468)
Q Consensus 283 L~l~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~l~~~~~~L~~L~l~~~~~~~~~~l~~~~~~~~~L~~L~l~ 362 (468)
|+++++ .+....+..+..+++|++|++++|.+...... .+..+++|+.|+++
T Consensus 198 L~l~~n-~i~~~~~~~l~~l~~L~~L~L~~N~l~~~~~~---------------------------~~~~l~~L~~L~L~ 249 (332)
T 2ft3_A 198 LHLDHN-KIQAIELEDLLRYSKLYRLGLGHNQIRMIENG---------------------------SLSFLPTLRELHLD 249 (332)
T ss_dssp CBCCSS-CCCCCCTTSSTTCTTCSCCBCCSSCCCCCCTT---------------------------GGGGCTTCCEEECC
T ss_pred EECCCC-cCCccCHHHhcCCCCCCEEECCCCcCCcCChh---------------------------HhhCCCCCCEEECC
Confidence 555544 22222223334444455555544443322211 12344555555555
Q ss_pred CCCCCCHHHHHHHHhcCCcCCeEEccCCCCCCHHHHHHHHh-----cCCCCCEEEccCCCCC--hhhHHhcccCCCCCEE
Q 012207 363 CCRKITYASINSITKTCTSLTSLRMECCKLVSWEAFVLIGQ-----QCQYLEELDITENEVN--DEGLKSISRCSKLSSL 435 (468)
Q Consensus 363 ~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~-----~~~~L~~L~l~~~~~~--~~~~~~l~~~~~L~~L 435 (468)
+|. ++. +......+++|+.|+++++. ++......+.. ..+.|+.|++.+|.+. +.....+..+++|+.+
T Consensus 250 ~N~-l~~--lp~~l~~l~~L~~L~l~~N~-l~~~~~~~~~~~~~~~~~~~l~~L~l~~N~~~~~~~~~~~~~~l~~L~~l 325 (332)
T 2ft3_A 250 NNK-LSR--VPAGLPDLKLLQVVYLHTNN-ITKVGVNDFCPVGFGVKRAYYNGISLFNNPVPYWEVQPATFRCVTDRLAI 325 (332)
T ss_dssp SSC-CCB--CCTTGGGCTTCCEEECCSSC-CCBCCTTSSSCSSCCSSSCCBSEEECCSSSSCGGGSCGGGGTTBCCSTTE
T ss_pred CCc-Cee--cChhhhcCccCCEEECCCCC-CCccChhHccccccccccccccceEeecCcccccccCcccccccchhhhh
Confidence 543 221 11112345666666666532 43322222211 2467889999998776 4444556678899999
Q ss_pred eeCCC
Q 012207 436 KLGIC 440 (468)
Q Consensus 436 ~l~~~ 440 (468)
++++|
T Consensus 326 ~l~~n 330 (332)
T 2ft3_A 326 QFGNY 330 (332)
T ss_dssp EC---
T ss_pred hcccc
Confidence 99887
|
| >1ogq_A PGIP-2, polygalacturonase inhibiting protein; inhibitor; HET: NAG; 1.7A {Phaseolus vulgaris} SCOP: c.10.2.8 | Back alignment and structure |
|---|
Probab=99.69 E-value=9.9e-20 Score=162.39 Aligned_cols=230 Identities=13% Similarity=0.102 Sum_probs=138.6
Q ss_pred hCCCccEeeecc-cCCCCCCccccccCCCCCeeeecCCCCCChHHHHHHHhcCCCCCEEEccCCcccChhhHHHHHhcCC
Q 012207 200 KCQEIRTLDLSY-LPITEKCLPPVVKLQYLEDLVLEGCHGIDDDGLASVEYSCKSLKALNLSKCQNISHVGLSSLIKGAD 278 (468)
Q Consensus 200 ~~~~L~~L~l~~-~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~ 278 (468)
.+++|++|++++ +.+.......+.++++|++|+++++ .+.......+.. +++|++|+++++..... +...+..++
T Consensus 74 ~l~~L~~L~L~~~n~l~~~~p~~l~~l~~L~~L~Ls~n-~l~~~~p~~~~~-l~~L~~L~Ls~N~l~~~--~p~~~~~l~ 149 (313)
T 1ogq_A 74 NLPYLNFLYIGGINNLVGPIPPAIAKLTQLHYLYITHT-NVSGAIPDFLSQ-IKTLVTLDFSYNALSGT--LPPSISSLP 149 (313)
T ss_dssp GCTTCSEEEEEEETTEESCCCGGGGGCTTCSEEEEEEE-CCEEECCGGGGG-CTTCCEEECCSSEEESC--CCGGGGGCT
T ss_pred CCCCCCeeeCCCCCcccccCChhHhcCCCCCEEECcCC-eeCCcCCHHHhC-CCCCCEEeCCCCccCCc--CChHHhcCC
Confidence 556666666663 4555445555556666666666653 232222222333 66666666666542211 112234566
Q ss_pred ccceEeecCCCCCchhHHHHhhcCC-CCCeeEecCCcCChhHHHHHHHhCCCCCeEecccCCCCCHHHHHHHHHhCCCCC
Q 012207 279 YLQQLILAYSFWVSADLSKCLHNFP-MLQSIKFEDCPVARSGIKAIGNWHGSLKELSLSKCSGVTDEELSFVVQSHKELR 357 (468)
Q Consensus 279 ~L~~L~l~~~~~~~~~~~~~l~~~~-~L~~L~l~~~~~~~~~~~~l~~~~~~L~~L~l~~~~~~~~~~l~~~~~~~~~L~ 357 (468)
+|++|+++++ .+....+..+..++ +|+.|++++|.+....+..+. .++ |++|+++++ .++.. .+..+..+++|+
T Consensus 150 ~L~~L~L~~N-~l~~~~p~~l~~l~~~L~~L~L~~N~l~~~~~~~~~-~l~-L~~L~Ls~N-~l~~~-~~~~~~~l~~L~ 224 (313)
T 1ogq_A 150 NLVGITFDGN-RISGAIPDSYGSFSKLFTSMTISRNRLTGKIPPTFA-NLN-LAFVDLSRN-MLEGD-ASVLFGSDKNTQ 224 (313)
T ss_dssp TCCEEECCSS-CCEEECCGGGGCCCTTCCEEECCSSEEEEECCGGGG-GCC-CSEEECCSS-EEEEC-CGGGCCTTSCCS
T ss_pred CCCeEECcCC-cccCcCCHHHhhhhhcCcEEECcCCeeeccCChHHh-CCc-ccEEECcCC-cccCc-CCHHHhcCCCCC
Confidence 7777777766 34444555666776 788888888876644444443 333 888888874 33221 233345678888
Q ss_pred eEecCCCCCCCHHHHHHHHhcCCcCCeEEccCCCCCCHHHHHHHHhcCCCCCEEEccCCCCChhhHHhcccCCCCCEEee
Q 012207 358 KLDITCCRKITYASINSITKTCTSLTSLRMECCKLVSWEAFVLIGQQCQYLEELDITENEVNDEGLKSISRCSKLSSLKL 437 (468)
Q Consensus 358 ~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l 437 (468)
.|++++|....... . ...+++|++|+++++. ++......+. .+++|+.|++++|.+++..+.. ..+++|+.+++
T Consensus 225 ~L~L~~N~l~~~~~--~-~~~l~~L~~L~Ls~N~-l~~~~p~~l~-~l~~L~~L~Ls~N~l~~~ip~~-~~l~~L~~l~l 298 (313)
T 1ogq_A 225 KIHLAKNSLAFDLG--K-VGLSKNLNGLDLRNNR-IYGTLPQGLT-QLKFLHSLNVSFNNLCGEIPQG-GNLQRFDVSAY 298 (313)
T ss_dssp EEECCSSEECCBGG--G-CCCCTTCCEEECCSSC-CEECCCGGGG-GCTTCCEEECCSSEEEEECCCS-TTGGGSCGGGT
T ss_pred EEECCCCceeeecC--c-ccccCCCCEEECcCCc-ccCcCChHHh-cCcCCCEEECcCCcccccCCCC-ccccccChHHh
Confidence 99888876321111 1 3467899999999855 4422222233 7899999999999888654333 67889999999
Q ss_pred CCCCccC
Q 012207 438 GICSNIT 444 (468)
Q Consensus 438 ~~~~~l~ 444 (468)
++|+.+.
T Consensus 299 ~~N~~lc 305 (313)
T 1ogq_A 299 ANNKCLC 305 (313)
T ss_dssp CSSSEEE
T ss_pred cCCCCcc
Confidence 9996565
|
| >1wwl_A Monocyte differentiation antigen CD14; LPS, immune system; HET: NAG; 2.50A {Mus musculus} | Back alignment and structure |
|---|
Probab=99.69 E-value=2.7e-19 Score=159.69 Aligned_cols=155 Identities=14% Similarity=0.135 Sum_probs=80.0
Q ss_pred CCCCeeEecCCcCChhHHHHHHHhCCCCCeEecccCCCCCHHHHHHHH--HhCCCCCeEecCCCCCCCH-HH-HHHHHhc
Q 012207 303 PMLQSIKFEDCPVARSGIKAIGNWHGSLKELSLSKCSGVTDEELSFVV--QSHKELRKLDITCCRKITY-AS-INSITKT 378 (468)
Q Consensus 303 ~~L~~L~l~~~~~~~~~~~~l~~~~~~L~~L~l~~~~~~~~~~l~~~~--~~~~~L~~L~l~~~~~~~~-~~-~~~~~~~ 378 (468)
++|++|++++|.+.......+. .+++|++|+++++......++.... ..+++|++|++++|. ++. .. ...+...
T Consensus 149 ~~L~~L~L~~N~l~~~~~~~~~-~l~~L~~L~Ls~N~l~~~~~~~~~~~~~~l~~L~~L~L~~N~-l~~~~~~~~~~~~~ 226 (312)
T 1wwl_A 149 PGLKVLSIAQAHSLNFSCEQVR-VFPALSTLDLSDNPELGERGLISALCPLKFPTLQVLALRNAG-METPSGVCSALAAA 226 (312)
T ss_dssp TTCCEEEEESCSCCCCCTTTCC-CCSSCCEEECCSCTTCHHHHHHHHSCTTSCTTCCEEECTTSC-CCCHHHHHHHHHHT
T ss_pred CCCcEEEeeCCCCccchHHHhc-cCCCCCEEECCCCCcCcchHHHHHHHhccCCCCCEEECCCCc-CcchHHHHHHHHhc
Confidence 5555555555554433323332 4556666666653222112222222 445666666666664 331 11 2233345
Q ss_pred CCcCCeEEccCCCCCCHHHHHHHHhcCCCCCEEEccCCCCChhhHHhcccCCCCCEEeeCCCCccCHHHHHHHHhcCccc
Q 012207 379 CTSLTSLRMECCKLVSWEAFVLIGQQCQYLEELDITENEVNDEGLKSISRCSKLSSLKLGICSNITDEGLKHVGSTCSML 458 (468)
Q Consensus 379 ~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~~L 458 (468)
+++|++|+++++. ++..........+++|++|++++|.++... ..+. ++|+.|++++| +++.. +. ...+++|
T Consensus 227 l~~L~~L~Ls~N~-l~~~~~~~~~~~l~~L~~L~Ls~N~l~~ip-~~~~--~~L~~L~Ls~N-~l~~~--p~-~~~l~~L 298 (312)
T 1wwl_A 227 RVQLQGLDLSHNS-LRDAAGAPSCDWPSQLNSLNLSFTGLKQVP-KGLP--AKLSVLDLSYN-RLDRN--PS-PDELPQV 298 (312)
T ss_dssp TCCCSEEECTTSC-CCSSCCCSCCCCCTTCCEEECTTSCCSSCC-SSCC--SEEEEEECCSS-CCCSC--CC-TTTSCEE
T ss_pred CCCCCEEECCCCc-CCcccchhhhhhcCCCCEEECCCCccChhh-hhcc--CCceEEECCCC-CCCCC--hh-HhhCCCC
Confidence 5666666666643 332210011114567777777777766322 2222 67777777777 66643 22 4467777
Q ss_pred CeeecCCCC
Q 012207 459 KELDLYRFS 467 (468)
Q Consensus 459 ~~L~l~~c~ 467 (468)
+.|++++|+
T Consensus 299 ~~L~L~~N~ 307 (312)
T 1wwl_A 299 GNLSLKGNP 307 (312)
T ss_dssp EEEECTTCT
T ss_pred CEEeccCCC
Confidence 777777775
|
| >2z80_A TOLL-like receptor 2, variable lymphocyte recepto; TLR2, lipopeptide, innate immunity, glycoprotein, immune RES inflammatory response; HET: NAG; 1.80A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.68 E-value=8.3e-18 Score=153.05 Aligned_cols=252 Identities=17% Similarity=0.126 Sum_probs=180.2
Q ss_pred CCCccEeeecccCCCCCCccccccCCCCCeeeecCCCCCChHHHHHHHhcCCCCCEEEccCCcccChhhHHHHHhcCCcc
Q 012207 201 CQEIRTLDLSYLPITEKCLPPVVKLQYLEDLVLEGCHGIDDDGLASVEYSCKSLKALNLSKCQNISHVGLSSLIKGADYL 280 (468)
Q Consensus 201 ~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L 280 (468)
.++|++|+++++.+.......+.++++|++|+++++ .+.......+.. +++|++|+++++... ... ...+..+++|
T Consensus 51 ~~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~L~~n-~l~~~~~~~~~~-l~~L~~L~Ls~n~l~-~~~-~~~~~~l~~L 126 (353)
T 2z80_A 51 TEAVKSLDLSNNRITYISNSDLQRCVNLQALVLTSN-GINTIEEDSFSS-LGSLEHLDLSYNYLS-NLS-SSWFKPLSSL 126 (353)
T ss_dssp CTTCCEEECTTSCCCEECTTTTTTCTTCCEEECTTS-CCCEECTTTTTT-CTTCCEEECCSSCCS-SCC-HHHHTTCTTC
T ss_pred cccCcEEECCCCcCcccCHHHhccCCCCCEEECCCC-ccCccCHhhcCC-CCCCCEEECCCCcCC-cCC-HhHhCCCccC
Confidence 368999999999887655556888999999999985 555543334544 899999999988633 221 2346788999
Q ss_pred ceEeecCCCCCchhHH-HHhhcCCCCCeeEecCCc-CChhHHHHHHHhCCCCCeEecccCCCCCHHHHHHHHHhCCCCCe
Q 012207 281 QQLILAYSFWVSADLS-KCLHNFPMLQSIKFEDCP-VARSGIKAIGNWHGSLKELSLSKCSGVTDEELSFVVQSHKELRK 358 (468)
Q Consensus 281 ~~L~l~~~~~~~~~~~-~~l~~~~~L~~L~l~~~~-~~~~~~~~l~~~~~~L~~L~l~~~~~~~~~~l~~~~~~~~~L~~ 358 (468)
++|+++++. +..... ..+..+++|++|++++|. +.......+. .+++|++|+++++ .++.. .+..+..+++|++
T Consensus 127 ~~L~L~~n~-l~~l~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~-~l~~L~~L~l~~n-~l~~~-~~~~l~~l~~L~~ 202 (353)
T 2z80_A 127 TFLNLLGNP-YKTLGETSLFSHLTKLQILRVGNMDTFTKIQRKDFA-GLTFLEELEIDAS-DLQSY-EPKSLKSIQNVSH 202 (353)
T ss_dssp SEEECTTCC-CSSSCSSCSCTTCTTCCEEEEEESSSCCEECTTTTT-TCCEEEEEEEEET-TCCEE-CTTTTTTCSEEEE
T ss_pred CEEECCCCC-CcccCchhhhccCCCCcEEECCCCccccccCHHHcc-CCCCCCEEECCCC-CcCcc-CHHHHhccccCCe
Confidence 999999874 332222 357789999999999984 5443333333 6789999999985 44432 1333557889999
Q ss_pred EecCCCCCCCHHHHHHHHhcCCcCCeEEccCCCCCCHH---HHHHHHhcCCCCCEEEccCCCCChhhHHh----cccCCC
Q 012207 359 LDITCCRKITYASINSITKTCTSLTSLRMECCKLVSWE---AFVLIGQQCQYLEELDITENEVNDEGLKS----ISRCSK 431 (468)
Q Consensus 359 L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~---~~~~~~~~~~~L~~L~l~~~~~~~~~~~~----l~~~~~ 431 (468)
|++++|. ++... ......+++|+.|+++++. ++.. .+... ..++.++.++++++.+++..... +..+++
T Consensus 203 L~l~~n~-l~~~~-~~~~~~~~~L~~L~L~~n~-l~~~~~~~l~~~-~~~~~l~~l~L~~~~l~~~~l~~l~~~l~~l~~ 278 (353)
T 2z80_A 203 LILHMKQ-HILLL-EIFVDVTSSVECLELRDTD-LDTFHFSELSTG-ETNSLIKKFTFRNVKITDESLFQVMKLLNQISG 278 (353)
T ss_dssp EEEECSC-STTHH-HHHHHHTTTEEEEEEESCB-CTTCCCC-------CCCCCCEEEEESCBCCHHHHHHHHHHHHTCTT
T ss_pred ecCCCCc-cccch-hhhhhhcccccEEECCCCc-cccccccccccc-cccchhhccccccccccCcchhhhHHHHhcccC
Confidence 9999987 44333 2334468999999999864 4432 22222 25788999999999998865443 567999
Q ss_pred CCEEeeCCCCccCHHHHHH-HHhcCcccCeeecCCCC
Q 012207 432 LSSLKLGICSNITDEGLKH-VGSTCSMLKELDLYRFS 467 (468)
Q Consensus 432 L~~L~l~~~~~l~~~~~~~-~~~~~~~L~~L~l~~c~ 467 (468)
|+.|++++| +++. ++. +...+++|+.|++++|+
T Consensus 279 L~~L~Ls~N-~l~~--i~~~~~~~l~~L~~L~L~~N~ 312 (353)
T 2z80_A 279 LLELEFSRN-QLKS--VPDGIFDRLTSLQKIWLHTNP 312 (353)
T ss_dssp CCEEECCSS-CCCC--CCTTTTTTCTTCCEEECCSSC
T ss_pred CCEEECCCC-CCCc--cCHHHHhcCCCCCEEEeeCCC
Confidence 999999999 8884 333 33579999999999996
|
| >2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like receptor, MD-2, LPS, leucine-rich repeat, glycoprotein, immune response; HET: NAG BMA FUL; 1.90A {Eptatretus burgeri} | Back alignment and structure |
|---|
Probab=99.68 E-value=3.9e-19 Score=158.50 Aligned_cols=249 Identities=14% Similarity=0.067 Sum_probs=169.6
Q ss_pred cEeeecccCCCCCCccccccCCCCCeeeecCCCCCChHHHHHHHhcCCCCCEEEccCCcccChhhHHHHHhcCCccceEe
Q 012207 205 RTLDLSYLPITEKCLPPVVKLQYLEDLVLEGCHGIDDDGLASVEYSCKSLKALNLSKCQNISHVGLSSLIKGADYLQQLI 284 (468)
Q Consensus 205 ~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~ 284 (468)
+.++.++..++... .. -.++|++|+++++ .+.......+.. +++|++|+++++..............+++|+.|+
T Consensus 10 ~~l~c~~~~l~~ip-~~--~~~~l~~L~L~~n-~l~~i~~~~~~~-l~~L~~L~L~~n~l~~~~~~~~~~~~~~~L~~L~ 84 (306)
T 2z66_A 10 TEIRCNSKGLTSVP-TG--IPSSATRLELESN-KLQSLPHGVFDK-LTQLTKLSLSSNGLSFKGCCSQSDFGTTSLKYLD 84 (306)
T ss_dssp TEEECCSSCCSSCC-SC--CCTTCCEEECCSS-CCCCCCTTTTTT-CTTCSEEECCSSCCCEEEEEEHHHHSCSCCCEEE
T ss_pred CEEEcCCCCcccCC-CC--CCCCCCEEECCCC-ccCccCHhHhhc-cccCCEEECCCCccCcccCcccccccccccCEEE
Confidence 45666655443221 11 2368999999985 455433333444 8999999999886322111112244689999999
Q ss_pred ecCCCCCchhHHHHhhcCCCCCeeEecCCcCChhHHHHHHHhCCCCCeEecccCCCCCHHHHHHHHHhCCCCCeEecCCC
Q 012207 285 LAYSFWVSADLSKCLHNFPMLQSIKFEDCPVARSGIKAIGNWHGSLKELSLSKCSGVTDEELSFVVQSHKELRKLDITCC 364 (468)
Q Consensus 285 l~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~l~~~~~~L~~L~l~~~~~~~~~~l~~~~~~~~~L~~L~l~~~ 364 (468)
++++.. . .++..+..+++|++|+++++.+...........+++|++|+++++ .+... ....+..+++|++|++++|
T Consensus 85 Ls~n~i-~-~l~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n-~l~~~-~~~~~~~l~~L~~L~l~~n 160 (306)
T 2z66_A 85 LSFNGV-I-TMSSNFLGLEQLEHLDFQHSNLKQMSEFSVFLSLRNLIYLDISHT-HTRVA-FNGIFNGLSSLEVLKMAGN 160 (306)
T ss_dssp CCSCSE-E-EEEEEEETCTTCCEEECTTSEEESSTTTTTTTTCTTCCEEECTTS-CCEEC-STTTTTTCTTCCEEECTTC
T ss_pred CCCCcc-c-cChhhcCCCCCCCEEECCCCcccccccchhhhhccCCCEEECCCC-cCCcc-chhhcccCcCCCEEECCCC
Confidence 998742 2 334447789999999999998765433122236799999999985 33321 2233557899999999988
Q ss_pred CCCCHHHHHHHHhcCCcCCeEEccCCCCCCHHHHHHHHhcCCCCCEEEccCCCCChhhHHhcccCCCCCEEeeCCCCccC
Q 012207 365 RKITYASINSITKTCTSLTSLRMECCKLVSWEAFVLIGQQCQYLEELDITENEVNDEGLKSISRCSKLSSLKLGICSNIT 444 (468)
Q Consensus 365 ~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~l~ 444 (468)
. ++..........+++|++|++++|. ++......+. .+++|++|++++|.+++.....+..+++|+.|++++| .++
T Consensus 161 ~-l~~~~~~~~~~~l~~L~~L~Ls~n~-l~~~~~~~~~-~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N-~l~ 236 (306)
T 2z66_A 161 S-FQENFLPDIFTELRNLTFLDLSQCQ-LEQLSPTAFN-SLSSLQVLNMSHNNFFSLDTFPYKCLNSLQVLDYSLN-HIM 236 (306)
T ss_dssp E-EGGGEECSCCTTCTTCCEEECTTSC-CCEECTTTTT-TCTTCCEEECTTSCCSBCCSGGGTTCTTCCEEECTTS-CCC
T ss_pred c-cccccchhHHhhCcCCCEEECCCCC-cCCcCHHHhc-CCCCCCEEECCCCccCccChhhccCcccCCEeECCCC-CCc
Confidence 6 3321122233468999999999964 5543333333 7899999999999998876667788999999999999 777
Q ss_pred HHHHHHHHhcC-cccCeeecCCCC
Q 012207 445 DEGLKHVGSTC-SMLKELDLYRFS 467 (468)
Q Consensus 445 ~~~~~~~~~~~-~~L~~L~l~~c~ 467 (468)
......+. .+ ++|+.|++++|+
T Consensus 237 ~~~~~~~~-~~~~~L~~L~L~~N~ 259 (306)
T 2z66_A 237 TSKKQELQ-HFPSSLAFLNLTQND 259 (306)
T ss_dssp BCSSSSCC-CCCTTCCEEECTTCC
T ss_pred ccCHHHHH-hhhccCCEEEccCCC
Confidence 53333333 55 499999999986
|
| >1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A | Back alignment and structure |
|---|
Probab=99.67 E-value=7.6e-17 Score=150.96 Aligned_cols=54 Identities=15% Similarity=0.165 Sum_probs=24.9
Q ss_pred CCCeEecCCCCCCCHHHHHHHHhcCCcCCeEEccCCCCCCHHHHHHHHhcCCCCCEEEccCCCCCh
Q 012207 355 ELRKLDITCCRKITYASINSITKTCTSLTSLRMECCKLVSWEAFVLIGQQCQYLEELDITENEVND 420 (468)
Q Consensus 355 ~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~ 420 (468)
+|+.|++++|. ++. +...+++|+.|++++|. ++. ++. .+++|++|++++|.++.
T Consensus 318 ~L~~L~Ls~N~-l~~-----lp~~~~~L~~L~L~~N~-l~~--lp~---~l~~L~~L~L~~N~l~~ 371 (454)
T 1jl5_A 318 SLEELNVSNNK-LIE-----LPALPPRLERLIASFNH-LAE--VPE---LPQNLKQLHVEYNPLRE 371 (454)
T ss_dssp TCCEEECCSSC-CSC-----CCCCCTTCCEEECCSSC-CSC--CCC---CCTTCCEEECCSSCCSS
T ss_pred cCCEEECCCCc-ccc-----ccccCCcCCEEECCCCc-ccc--ccc---hhhhccEEECCCCCCCc
Confidence 55555555543 221 11124556666665543 221 111 24556666666655544
|
| >1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A | Back alignment and structure |
|---|
Probab=99.67 E-value=2e-16 Score=148.18 Aligned_cols=321 Identities=16% Similarity=0.124 Sum_probs=198.8
Q ss_pred CCCcEEecCCCCCCChhHHHhhhcccccCCccEEecCCCCcccHHHHHHhhhcCCCCcEEEccCCCccCHHHHHHHHcC-
Q 012207 71 PFITQLDLSLCPRANDDALSIVSSSSWKLTLRSINLSRSRLFTKVGLSSLTVNCRFLTEIDLSNGTEMGDAAAAAIAEA- 149 (468)
Q Consensus 71 ~~l~~l~l~~~~~~~~~~~~~l~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~l~~~- 149 (468)
..+++++++++. +.. + ....++|++|+++++. +.. + ....++|++|+++++. +.. +...
T Consensus 71 ~~l~~L~l~~~~-l~~-----l--p~~~~~L~~L~l~~n~-l~~--l---p~~~~~L~~L~l~~n~-l~~-----l~~~~ 130 (454)
T 1jl5_A 71 RQAHELELNNLG-LSS-----L--PELPPHLESLVASCNS-LTE--L---PELPQSLKSLLVDNNN-LKA-----LSDLP 130 (454)
T ss_dssp HTCSEEECTTSC-CSC-----C--CSCCTTCSEEECCSSC-CSS--C---CCCCTTCCEEECCSSC-CSC-----CCSCC
T ss_pred cCCCEEEecCCc-ccc-----C--CCCcCCCCEEEccCCc-CCc--c---ccccCCCcEEECCCCc-cCc-----ccCCC
Confidence 467889998774 222 2 1234789999998764 221 1 1235789999998873 433 1122
Q ss_pred CCCCeEeccCCcccChHhHHHHHhcCCCCcEEeccCCCCCChHHHHHHHhhCCCccEeeecccCCCCCCccccccCCCCC
Q 012207 150 KNLERLWLARCKLITDLGIGRIAACCRKLKLLCLKWCIRVTDLGVELVALKCQEIRTLDLSYLPITEKCLPPVVKLQYLE 229 (468)
Q Consensus 150 ~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~ 229 (468)
++|++|+++++. ++.. .. ...+++|++|+++++. ++..+ ...++|++|+++++.+.. +..+.++++|+
T Consensus 131 ~~L~~L~L~~n~-l~~l--p~-~~~l~~L~~L~l~~N~-l~~lp-----~~~~~L~~L~L~~n~l~~--l~~~~~l~~L~ 198 (454)
T 1jl5_A 131 PLLEYLGVSNNQ-LEKL--PE-LQNSSFLKIIDVDNNS-LKKLP-----DLPPSLEFIAAGNNQLEE--LPELQNLPFLT 198 (454)
T ss_dssp TTCCEEECCSSC-CSSC--CC-CTTCTTCCEEECCSSC-CSCCC-----CCCTTCCEEECCSSCCSS--CCCCTTCTTCC
T ss_pred CCCCEEECcCCC-CCCC--cc-cCCCCCCCEEECCCCc-CcccC-----CCcccccEEECcCCcCCc--CccccCCCCCC
Confidence 689999998864 3332 22 3348899999998873 43311 134689999999997765 34678899999
Q ss_pred eeeecCCCCCChHHHHHHHhcCCCCCEEEccCCcccChhhHHHHHhcCCccceEeecCCCCCchhHHHHhhcCCCCCeeE
Q 012207 230 DLVLEGCHGIDDDGLASVEYSCKSLKALNLSKCQNISHVGLSSLIKGADYLQQLILAYSFWVSADLSKCLHNFPMLQSIK 309 (468)
Q Consensus 230 ~L~l~~~~~~~~~~~~~l~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~L~~L~ 309 (468)
+|+++++. +... ....++|++|+++++... .. .. +..+++|+.|+++++.. .. ++ ...++|+.|+
T Consensus 199 ~L~l~~N~-l~~l-----~~~~~~L~~L~l~~n~l~-~l--p~-~~~l~~L~~L~l~~N~l-~~-l~---~~~~~L~~L~ 263 (454)
T 1jl5_A 199 AIYADNNS-LKKL-----PDLPLSLESIVAGNNILE-EL--PE-LQNLPFLTTIYADNNLL-KT-LP---DLPPSLEALN 263 (454)
T ss_dssp EEECCSSC-CSSC-----CCCCTTCCEEECCSSCCS-SC--CC-CTTCTTCCEEECCSSCC-SS-CC---SCCTTCCEEE
T ss_pred EEECCCCc-CCcC-----CCCcCcccEEECcCCcCC-cc--cc-cCCCCCCCEEECCCCcC-Cc-cc---ccccccCEEE
Confidence 99999853 3321 122468999999988633 21 12 45788999999988743 21 11 1347899999
Q ss_pred ecCCcCChhHHHHHHHhCCCCCeEecccCCCCCHHHHHHHHHhCCCCCeEecCCCCCCCHHHHHHHHhcC-CcCCeEEcc
Q 012207 310 FEDCPVARSGIKAIGNWHGSLKELSLSKCSGVTDEELSFVVQSHKELRKLDITCCRKITYASINSITKTC-TSLTSLRME 388 (468)
Q Consensus 310 l~~~~~~~~~~~~l~~~~~~L~~L~l~~~~~~~~~~l~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~-~~L~~L~l~ 388 (468)
+++|.+... ....++|++|+++++ .++. +. ...++|+.|++++|. ++. + ..+ ++|+.|+++
T Consensus 264 l~~N~l~~l-----~~~~~~L~~L~ls~N-~l~~--l~---~~~~~L~~L~l~~N~-l~~-----i-~~~~~~L~~L~Ls 325 (454)
T 1jl5_A 264 VRDNYLTDL-----PELPQSLTFLDVSEN-IFSG--LS---ELPPNLYYLNASSNE-IRS-----L-CDLPPSLEELNVS 325 (454)
T ss_dssp CCSSCCSCC-----CCCCTTCCEEECCSS-CCSE--ES---CCCTTCCEEECCSSC-CSE-----E-CCCCTTCCEEECC
T ss_pred CCCCccccc-----CcccCcCCEEECcCC-ccCc--cc---CcCCcCCEEECcCCc-CCc-----c-cCCcCcCCEEECC
Confidence 999987641 113478999999985 4443 11 112689999999886 332 1 123 589999999
Q ss_pred CCCCCCHHHHHHHHhcCCCCCEEEccCCCCChhhHHhcccCCCCCEEeeCCCCccCHH-HH-------------HHHHhc
Q 012207 389 CCKLVSWEAFVLIGQQCQYLEELDITENEVNDEGLKSISRCSKLSSLKLGICSNITDE-GL-------------KHVGST 454 (468)
Q Consensus 389 ~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~l~~~-~~-------------~~~~~~ 454 (468)
++. ++. +...+++|+.|++++|.++.... .+++|+.|++++| .++.. .+ ..+...
T Consensus 326 ~N~-l~~-----lp~~~~~L~~L~L~~N~l~~lp~----~l~~L~~L~L~~N-~l~~l~~ip~~l~~L~~n~~~~~i~~~ 394 (454)
T 1jl5_A 326 NNK-LIE-----LPALPPRLERLIASFNHLAEVPE----LPQNLKQLHVEYN-PLREFPDIPESVEDLRMNSHLAEVPEL 394 (454)
T ss_dssp SSC-CSC-----CCCCCTTCCEEECCSSCCSCCCC----CCTTCCEEECCSS-CCSSCCCCCTTCCEEECCC--------
T ss_pred CCc-ccc-----ccccCCcCCEEECCCCccccccc----hhhhccEEECCCC-CCCcCCCChHHHHhhhhcccccccccc
Confidence 854 442 22246899999999998875432 3688999999999 66641 01 111112
Q ss_pred CcccCeeecCCCC
Q 012207 455 CSMLKELDLYRFS 467 (468)
Q Consensus 455 ~~~L~~L~l~~c~ 467 (468)
+++|+.|++++|+
T Consensus 395 ~~~L~~L~ls~N~ 407 (454)
T 1jl5_A 395 PQNLKQLHVETNP 407 (454)
T ss_dssp -------------
T ss_pred cCcCCEEECCCCc
Confidence 3788888888875
|
| >2ft3_A Biglycan; proteoglycan, dimer interface, structural protein, signaling; HET: NAG FLC; 3.40A {Bos taurus} | Back alignment and structure |
|---|
Probab=99.66 E-value=2.9e-18 Score=154.67 Aligned_cols=271 Identities=12% Similarity=0.041 Sum_probs=185.0
Q ss_pred CCCCcEEeccCCCCCChHHHHHHHhhCCCccEeeecccCCCCCCccccccCCCCCeeeecCCCCCChHHHHHHHhcCCCC
Q 012207 175 CRKLKLLCLKWCIRVTDLGVELVALKCQEIRTLDLSYLPITEKCLPPVVKLQYLEDLVLEGCHGIDDDGLASVEYSCKSL 254 (468)
Q Consensus 175 ~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~~L 254 (468)
.++|++|+++++. ++..... .+..+++|++|+++++.+.......+.++++|++|+++++ .+..... ...++|
T Consensus 53 ~~~l~~L~l~~n~-i~~~~~~-~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n-~l~~l~~----~~~~~L 125 (332)
T 2ft3_A 53 SPDTTLLDLQNND-ISELRKD-DFKGLQHLYALVLVNNKISKIHEKAFSPLRKLQKLYISKN-HLVEIPP----NLPSSL 125 (332)
T ss_dssp CTTCCEEECCSSC-CCEECTT-TTTTCTTCCEEECCSSCCCEECGGGSTTCTTCCEEECCSS-CCCSCCS----SCCTTC
T ss_pred CCCCeEEECCCCc-CCccCHh-HhhCCCCCcEEECCCCccCccCHhHhhCcCCCCEEECCCC-cCCccCc----cccccC
Confidence 4789999999873 4433221 2347899999999999888766778889999999999985 4442221 113799
Q ss_pred CEEEccCCcccChhhHHHHHhcCCccceEeecCCCCCc-hhHHHHhhcCCCCCeeEecCCcCChhHHHHHHHhCCCCCeE
Q 012207 255 KALNLSKCQNISHVGLSSLIKGADYLQQLILAYSFWVS-ADLSKCLHNFPMLQSIKFEDCPVARSGIKAIGNWHGSLKEL 333 (468)
Q Consensus 255 ~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~-~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~l~~~~~~L~~L 333 (468)
++|+++++...... ...+..+++|+.|+++++.... ...+..+..+ +|+.|+++++.+..... . ..++|++|
T Consensus 126 ~~L~l~~n~i~~~~--~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~l-~L~~L~l~~n~l~~l~~-~---~~~~L~~L 198 (332)
T 2ft3_A 126 VELRIHDNRIRKVP--KGVFSGLRNMNCIEMGGNPLENSGFEPGAFDGL-KLNYLRISEAKLTGIPK-D---LPETLNEL 198 (332)
T ss_dssp CEEECCSSCCCCCC--SGGGSSCSSCCEEECCSCCCBGGGSCTTSSCSC-CCSCCBCCSSBCSSCCS-S---SCSSCSCC
T ss_pred CEEECCCCccCccC--HhHhCCCccCCEEECCCCccccCCCCcccccCC-ccCEEECcCCCCCccCc-c---ccCCCCEE
Confidence 99999987632211 1235678999999999874321 1233445555 89999999998765211 1 23699999
Q ss_pred ecccCCCCCHHHHHHHHHhCCCCCeEecCCCCCCCHHHHHHHHhcCCcCCeEEccCCCCCCHHHHHHHHhcCCCCCEEEc
Q 012207 334 SLSKCSGVTDEELSFVVQSHKELRKLDITCCRKITYASINSITKTCTSLTSLRMECCKLVSWEAFVLIGQQCQYLEELDI 413 (468)
Q Consensus 334 ~l~~~~~~~~~~l~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l 413 (468)
+++++ .++... ...+..+++|+.|++++|. ++..... ....+++|++|++++|. ++. +......+++|+.|++
T Consensus 199 ~l~~n-~i~~~~-~~~l~~l~~L~~L~L~~N~-l~~~~~~-~~~~l~~L~~L~L~~N~-l~~--lp~~l~~l~~L~~L~l 271 (332)
T 2ft3_A 199 HLDHN-KIQAIE-LEDLLRYSKLYRLGLGHNQ-IRMIENG-SLSFLPTLRELHLDNNK-LSR--VPAGLPDLKLLQVVYL 271 (332)
T ss_dssp BCCSS-CCCCCC-TTSSTTCTTCSCCBCCSSC-CCCCCTT-GGGGCTTCCEEECCSSC-CCB--CCTTGGGCTTCCEEEC
T ss_pred ECCCC-cCCccC-HHHhcCCCCCCEEECCCCc-CCcCChh-HhhCCCCCCEEECCCCc-Cee--cChhhhcCccCCEEEC
Confidence 99985 444321 1234567999999999886 4332211 23478999999999864 542 2222337899999999
Q ss_pred cCCCCChhhHHhccc------CCCCCEEeeCCCCccCHH-HHHHHHhcCcccCeeecCCCC
Q 012207 414 TENEVNDEGLKSISR------CSKLSSLKLGICSNITDE-GLKHVGSTCSMLKELDLYRFS 467 (468)
Q Consensus 414 ~~~~~~~~~~~~l~~------~~~L~~L~l~~~~~l~~~-~~~~~~~~~~~L~~L~l~~c~ 467 (468)
++|.++..+...+.. .++|+.|++++| .+... ........+++|+.+++++|+
T Consensus 272 ~~N~l~~~~~~~~~~~~~~~~~~~l~~L~l~~N-~~~~~~~~~~~~~~l~~L~~l~l~~n~ 331 (332)
T 2ft3_A 272 HTNNITKVGVNDFCPVGFGVKRAYYNGISLFNN-PVPYWEVQPATFRCVTDRLAIQFGNYK 331 (332)
T ss_dssp CSSCCCBCCTTSSSCSSCCSSSCCBSEEECCSS-SSCGGGSCGGGGTTBCCSTTEEC----
T ss_pred CCCCCCccChhHccccccccccccccceEeecC-cccccccCcccccccchhhhhhccccc
Confidence 999999877666653 468999999999 45422 222344579999999999986
|
| >3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae} | Back alignment and structure |
|---|
Probab=99.66 E-value=1e-17 Score=158.53 Aligned_cols=236 Identities=14% Similarity=0.091 Sum_probs=130.6
Q ss_pred CccEeeecccCCCCCCccccccCCCCCeeeecCCCCCChHHHHHHHhcCCCCCEEEccCCcccChhhHHHHHhcCCccce
Q 012207 203 EIRTLDLSYLPITEKCLPPVVKLQYLEDLVLEGCHGIDDDGLASVEYSCKSLKALNLSKCQNISHVGLSSLIKGADYLQQ 282 (468)
Q Consensus 203 ~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~ 282 (468)
+|+.|+++++.+.......+..+++|++|+++++. +..... +.. +++|+.|+++++.. .. +...++|+.
T Consensus 35 ~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~-l~~~~~--l~~-l~~L~~L~Ls~N~l-~~------l~~~~~L~~ 103 (487)
T 3oja_A 35 NVKELDLSGNPLSQISAADLAPFTKLELLNLSSNV-LYETLD--LES-LSTLRTLDLNNNYV-QE------LLVGPSIET 103 (487)
T ss_dssp GCCEEECCSSCCCCCCGGGGTTCTTCCEEECTTSC-CEEEEE--CTT-CTTCCEEECCSSEE-EE------EEECTTCCE
T ss_pred CccEEEeeCCcCCCCCHHHHhCCCCCCEEEeeCCC-CCCCcc--ccc-CCCCCEEEecCCcC-CC------CCCCCCcCE
Confidence 45555555555444434444455555555555532 221111 222 55555555555431 11 112255555
Q ss_pred EeecCCCCCchhHHHHhhcCCCCCeeEecCCcCChhHHHHHHHhCCCCCeEecccCCCCCHHHHHHHHHhCCCCCeEecC
Q 012207 283 LILAYSFWVSADLSKCLHNFPMLQSIKFEDCPVARSGIKAIGNWHGSLKELSLSKCSGVTDEELSFVVQSHKELRKLDIT 362 (468)
Q Consensus 283 L~l~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~l~~~~~~L~~L~l~~~~~~~~~~l~~~~~~~~~L~~L~l~ 362 (468)
|+++++.. ....+ ..+++|+.|++++|.++......+. .+++|+.|+++++ .++......+...+++|+.|+++
T Consensus 104 L~L~~N~l-~~~~~---~~l~~L~~L~L~~N~l~~~~~~~~~-~l~~L~~L~Ls~N-~l~~~~~~~l~~~l~~L~~L~Ls 177 (487)
T 3oja_A 104 LHAANNNI-SRVSC---SRGQGKKNIYLANNKITMLRDLDEG-CRSRVQYLDLKLN-EIDTVNFAELAASSDTLEHLNLQ 177 (487)
T ss_dssp EECCSSCC-CCEEE---CCCSSCEEEECCSSCCCSGGGBCGG-GGSSEEEEECTTS-CCCEEEGGGGGGGTTTCCEEECT
T ss_pred EECcCCcC-CCCCc---cccCCCCEEECCCCCCCCCCchhhc-CCCCCCEEECCCC-CCCCcChHHHhhhCCcccEEecC
Confidence 55555422 21111 2345666666666666544333332 4566777777663 44432222233356777777777
Q ss_pred CCCCCCHHHHHHHHhcCCcCCeEEccCCCCCCHHHHHHHHhcCCCCCEEEccCCCCChhhHHhcccCCCCCEEeeCCCCc
Q 012207 363 CCRKITYASINSITKTCTSLTSLRMECCKLVSWEAFVLIGQQCQYLEELDITENEVNDEGLKSISRCSKLSSLKLGICSN 442 (468)
Q Consensus 363 ~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~ 442 (468)
+|. ++.. .. ...+++|+.|+++++. ++.... .+. .+++|+.|++++|.++... ..+..+++|+.|++++| .
T Consensus 178 ~N~-l~~~--~~-~~~l~~L~~L~Ls~N~-l~~~~~-~~~-~l~~L~~L~Ls~N~l~~lp-~~l~~l~~L~~L~l~~N-~ 248 (487)
T 3oja_A 178 YNF-IYDV--KG-QVVFAKLKTLDLSSNK-LAFMGP-EFQ-SAAGVTWISLRNNKLVLIE-KALRFSQNLEHFDLRGN-G 248 (487)
T ss_dssp TSC-CCEE--EC-CCCCTTCCEEECCSSC-CCEECG-GGG-GGTTCSEEECTTSCCCEEC-TTCCCCTTCCEEECTTC-C
T ss_pred CCc-cccc--cc-cccCCCCCEEECCCCC-CCCCCH-hHc-CCCCccEEEecCCcCcccc-hhhccCCCCCEEEcCCC-C
Confidence 765 3322 11 1146788888888754 443211 233 7789999999999888643 44667889999999999 7
Q ss_pred cCHHHHHHHHhcCcccCeeecC
Q 012207 443 ITDEGLKHVGSTCSMLKELDLY 464 (468)
Q Consensus 443 l~~~~~~~~~~~~~~L~~L~l~ 464 (468)
+....+..+...+++|+.+.+.
T Consensus 249 l~c~~~~~~~~~l~~L~~l~~~ 270 (487)
T 3oja_A 249 FHCGTLRDFFSKNQRVQTVAKQ 270 (487)
T ss_dssp BCHHHHHHHHTTCHHHHHHHHH
T ss_pred CcCcchHHHHHhCCCCcEEecc
Confidence 7755666677778888777663
|
| >4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV} | Back alignment and structure |
|---|
Probab=99.65 E-value=9.6e-18 Score=150.39 Aligned_cols=232 Identities=16% Similarity=0.136 Sum_probs=129.0
Q ss_pred CCCCcEEeccCCCCCChHHHHHHHhhCCCccEeeecccCCCCCCccccccCCCCCeeeecCCCCCChHHHHHHHhcCCCC
Q 012207 175 CRKLKLLCLKWCIRVTDLGVELVALKCQEIRTLDLSYLPITEKCLPPVVKLQYLEDLVLEGCHGIDDDGLASVEYSCKSL 254 (468)
Q Consensus 175 ~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~~L 254 (468)
.++++.|+++++ .++..+ .....+++|++|+++++.+. .....+.++++|++|+++++ .+... ...+.. +++|
T Consensus 80 ~~~l~~L~L~~n-~l~~lp--~~l~~l~~L~~L~L~~n~l~-~lp~~~~~l~~L~~L~Ls~n-~l~~l-p~~l~~-l~~L 152 (328)
T 4fcg_A 80 QPGRVALELRSV-PLPQFP--DQAFRLSHLQHMTIDAAGLM-ELPDTMQQFAGLETLTLARN-PLRAL-PASIAS-LNRL 152 (328)
T ss_dssp STTCCEEEEESS-CCSSCC--SCGGGGTTCSEEEEESSCCC-CCCSCGGGGTTCSEEEEESC-CCCCC-CGGGGG-CTTC
T ss_pred ccceeEEEccCC-CchhcC--hhhhhCCCCCEEECCCCCcc-chhHHHhccCCCCEEECCCC-ccccC-cHHHhc-CcCC
Confidence 466777777664 233211 11224667777777776665 44445666677777777663 33311 112333 5666
Q ss_pred CEEEccCCcccChhhHHHHHhcCCccceEeecCCCCCchhHHHHhhcCCCCCeeEecCCcCChhHHHHHHHhCCCCCeEe
Q 012207 255 KALNLSKCQNISHVGLSSLIKGADYLQQLILAYSFWVSADLSKCLHNFPMLQSIKFEDCPVARSGIKAIGNWHGSLKELS 334 (468)
Q Consensus 255 ~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~l~~~~~~L~~L~ 334 (468)
++|++++|....... ..+....+ ...+..+++|++|++++|.+.. .+..+. .+++|++|+
T Consensus 153 ~~L~L~~n~~~~~~p--------~~~~~~~~----------~~~~~~l~~L~~L~L~~n~l~~-lp~~l~-~l~~L~~L~ 212 (328)
T 4fcg_A 153 RELSIRACPELTELP--------EPLASTDA----------SGEHQGLVNLQSLRLEWTGIRS-LPASIA-NLQNLKSLK 212 (328)
T ss_dssp CEEEEEEETTCCCCC--------SCSEEEC-----------CCCEEESTTCCEEEEEEECCCC-CCGGGG-GCTTCCEEE
T ss_pred CEEECCCCCCccccC--------hhHhhccc----------hhhhccCCCCCEEECcCCCcCc-chHhhc-CCCCCCEEE
Confidence 666666543222100 00111100 0112346677777777766552 222222 566777777
Q ss_pred cccCCCCCHHHHHHHHHhCCCCCeEecCCCCCCCHHHHHHHHhcCCcCCeEEccCCCCCCHHHHHHHHhcCCCCCEEEcc
Q 012207 335 LSKCSGVTDEELSFVVQSHKELRKLDITCCRKITYASINSITKTCTSLTSLRMECCKLVSWEAFVLIGQQCQYLEELDIT 414 (468)
Q Consensus 335 l~~~~~~~~~~l~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~ 414 (468)
++++ .++. ++..+..+++|+.|++++|...... ......+++|++|++++|...... ...+ ..+++|+.|+++
T Consensus 213 L~~N-~l~~--l~~~l~~l~~L~~L~Ls~n~~~~~~--p~~~~~l~~L~~L~L~~n~~~~~~-p~~~-~~l~~L~~L~L~ 285 (328)
T 4fcg_A 213 IRNS-PLSA--LGPAIHHLPKLEELDLRGCTALRNY--PPIFGGRAPLKRLILKDCSNLLTL-PLDI-HRLTQLEKLDLR 285 (328)
T ss_dssp EESS-CCCC--CCGGGGGCTTCCEEECTTCTTCCBC--CCCTTCCCCCCEEECTTCTTCCBC-CTTG-GGCTTCCEEECT
T ss_pred ccCC-CCCc--CchhhccCCCCCEEECcCCcchhhh--HHHhcCCCCCCEEECCCCCchhhc-chhh-hcCCCCCEEeCC
Confidence 7764 3332 2233556677777777776543321 112245778888888876644321 1122 378888888888
Q ss_pred CCCCChhhHHhcccCCCCCEEeeCCC
Q 012207 415 ENEVNDEGLKSISRCSKLSSLKLGIC 440 (468)
Q Consensus 415 ~~~~~~~~~~~l~~~~~L~~L~l~~~ 440 (468)
+|.+....+..+.++++|+.+.+..+
T Consensus 286 ~n~~~~~iP~~l~~L~~L~~l~l~~~ 311 (328)
T 4fcg_A 286 GCVNLSRLPSLIAQLPANCIILVPPH 311 (328)
T ss_dssp TCTTCCCCCGGGGGSCTTCEEECCGG
T ss_pred CCCchhhccHHHhhccCceEEeCCHH
Confidence 88777777777888888888888766
|
| >3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae} | Back alignment and structure |
|---|
Probab=99.65 E-value=7.1e-18 Score=150.85 Aligned_cols=129 Identities=23% Similarity=0.171 Sum_probs=61.5
Q ss_pred HHhhhcCCCCcEEEccCCCccCHHHHHHHHcCCCCCeEeccCCcccChHhHHHHHhcCCCCcEEeccCCCCCChHHHHHH
Q 012207 118 SSLTVNCRFLTEIDLSNGTEMGDAAAAAIAEAKNLERLWLARCKLITDLGIGRIAACCRKLKLLCLKWCIRVTDLGVELV 197 (468)
Q Consensus 118 ~~~~~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~ 197 (468)
..+...+++|++|+++++ .+.......+..+++|++|+++++....... ...+++|++|+++++. ++..
T Consensus 27 ~~~~~~~~~L~~L~L~~n-~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~----~~~l~~L~~L~Ls~n~-l~~l----- 95 (317)
T 3o53_A 27 ASLRQSAWNVKELDLSGN-PLSQISAADLAPFTKLELLNLSSNVLYETLD----LESLSTLRTLDLNNNY-VQEL----- 95 (317)
T ss_dssp HHHHTTGGGCSEEECTTS-CCCCCCHHHHTTCTTCCEEECTTSCCEEEEE----ETTCTTCCEEECCSSE-EEEE-----
T ss_pred HHHhccCCCCCEEECcCC-ccCcCCHHHhhCCCcCCEEECCCCcCCcchh----hhhcCCCCEEECcCCc-cccc-----
Confidence 344445566666666665 3444444456666666666666653211111 2235666666666542 2221
Q ss_pred HhhCCCccEeeecccCCCCCCccccccCCCCCeeeecCCCCCChHHHHHHHhcCCCCCEEEccCCc
Q 012207 198 ALKCQEIRTLDLSYLPITEKCLPPVVKLQYLEDLVLEGCHGIDDDGLASVEYSCKSLKALNLSKCQ 263 (468)
Q Consensus 198 ~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~~L~~L~l~~~~ 263 (468)
...++|++|+++++.+..... ..+++|++|+++++ .+.......+.. +++|+.|+++++.
T Consensus 96 -~~~~~L~~L~l~~n~l~~~~~---~~~~~L~~L~l~~N-~l~~~~~~~~~~-l~~L~~L~Ls~N~ 155 (317)
T 3o53_A 96 -LVGPSIETLHAANNNISRVSC---SRGQGKKNIYLANN-KITMLRDLDEGC-RSRVQYLDLKLNE 155 (317)
T ss_dssp -EECTTCCEEECCSSCCSEEEE---CCCSSCEEEECCSS-CCCSGGGBCTGG-GSSEEEEECTTSC
T ss_pred -cCCCCcCEEECCCCccCCcCc---cccCCCCEEECCCC-CCCCccchhhhc-cCCCCEEECCCCC
Confidence 133566666666655443221 12455666666553 233222112222 4555555555543
|
| >3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A | Back alignment and structure |
|---|
Probab=99.63 E-value=2.9e-17 Score=154.63 Aligned_cols=227 Identities=18% Similarity=0.096 Sum_probs=125.5
Q ss_pred CCCcEEEccCCCccCHHHHHHHHcCCCCCeEeccCCcccChHhHHHHHhcCCCCcEEeccCCCCCChHHHHHHHhhCCCc
Q 012207 125 RFLTEIDLSNGTEMGDAAAAAIAEAKNLERLWLARCKLITDLGIGRIAACCRKLKLLCLKWCIRVTDLGVELVALKCQEI 204 (468)
Q Consensus 125 ~~L~~L~l~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L 204 (468)
++++.|+++++ .+.......+..+++|++|+++++. +.......+. .+++|++|+++++. ++..+. ..+..+++|
T Consensus 75 ~~l~~L~L~~n-~i~~~~~~~~~~l~~L~~L~Ls~n~-i~~~~~~~~~-~l~~L~~L~L~~n~-l~~~~~-~~~~~l~~L 149 (452)
T 3zyi_A 75 SNTRYLNLMEN-NIQMIQADTFRHLHHLEVLQLGRNS-IRQIEVGAFN-GLASLNTLELFDNW-LTVIPS-GAFEYLSKL 149 (452)
T ss_dssp TTCSEEECCSS-CCCEECTTTTTTCTTCCEEECCSSC-CCEECTTTTT-TCTTCCEEECCSSC-CSBCCT-TTSSSCTTC
T ss_pred CCccEEECcCC-cCceECHHHcCCCCCCCEEECCCCc-cCCcChhhcc-CcccCCEEECCCCc-CCccCh-hhhcccCCC
Confidence 45555555555 2333333345555666666665542 2222111121 25666666666542 322211 112356777
Q ss_pred cEeeecccCCCCCCccccccCCCCCeeeecCCCCCChHHHHHHHhcCCCCCEEEccCCcccChhhHHHHHhcCCccceEe
Q 012207 205 RTLDLSYLPITEKCLPPVVKLQYLEDLVLEGCHGIDDDGLASVEYSCKSLKALNLSKCQNISHVGLSSLIKGADYLQQLI 284 (468)
Q Consensus 205 ~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~ 284 (468)
++|++++|.+.......+.++++|++|++++++.+.......+.. +++|+.|+++++...... .+..+++|+.|+
T Consensus 150 ~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~~~~l~~i~~~~~~~-l~~L~~L~L~~n~l~~~~----~~~~l~~L~~L~ 224 (452)
T 3zyi_A 150 RELWLRNNPIESIPSYAFNRVPSLMRLDLGELKKLEYISEGAFEG-LFNLKYLNLGMCNIKDMP----NLTPLVGLEELE 224 (452)
T ss_dssp CEEECCSCCCCEECTTTTTTCTTCCEEECCCCTTCCEECTTTTTT-CTTCCEEECTTSCCSSCC----CCTTCTTCCEEE
T ss_pred CEEECCCCCcceeCHhHHhcCCcccEEeCCCCCCccccChhhccC-CCCCCEEECCCCcccccc----cccccccccEEE
Confidence 777777776654444456667777777777765555443333333 677777777776532211 134556777777
Q ss_pred ecCCCCCchhHHHHhhcCCCCCeeEecCCcCChhHHHHHHHhCCCCCeEecccCCCCCHHHHHHHHHhCCCCCeEecCCC
Q 012207 285 LAYSFWVSADLSKCLHNFPMLQSIKFEDCPVARSGIKAIGNWHGSLKELSLSKCSGVTDEELSFVVQSHKELRKLDITCC 364 (468)
Q Consensus 285 l~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~l~~~~~~L~~L~l~~~~~~~~~~l~~~~~~~~~L~~L~l~~~ 364 (468)
++++ .+....+..+..+++|+.|++.+|.+.......+. .+++|+.|+++++ .++.. ....+..+++|+.|++++|
T Consensus 225 Ls~N-~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~-~l~~L~~L~L~~N-~l~~~-~~~~~~~l~~L~~L~L~~N 300 (452)
T 3zyi_A 225 MSGN-HFPEIRPGSFHGLSSLKKLWVMNSQVSLIERNAFD-GLASLVELNLAHN-NLSSL-PHDLFTPLRYLVELHLHHN 300 (452)
T ss_dssp CTTS-CCSEECGGGGTTCTTCCEEECTTSCCCEECTTTTT-TCTTCCEEECCSS-CCSCC-CTTSSTTCTTCCEEECCSS
T ss_pred CcCC-cCcccCcccccCccCCCEEEeCCCcCceECHHHhc-CCCCCCEEECCCC-cCCcc-ChHHhccccCCCEEEccCC
Confidence 7776 34444455667777777777777776654433333 5677777777764 33321 1122345677777777766
Q ss_pred C
Q 012207 365 R 365 (468)
Q Consensus 365 ~ 365 (468)
+
T Consensus 301 p 301 (452)
T 3zyi_A 301 P 301 (452)
T ss_dssp C
T ss_pred C
Confidence 5
|
| >3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.62 E-value=2.7e-17 Score=154.30 Aligned_cols=157 Identities=17% Similarity=0.094 Sum_probs=80.2
Q ss_pred hCCCccEeeecccCCCCCCccccccCCCCCeeeecCCCCCChHHHHHHHhcCCCCCEEEccCCcccChhhHHHHHhcCCc
Q 012207 200 KCQEIRTLDLSYLPITEKCLPPVVKLQYLEDLVLEGCHGIDDDGLASVEYSCKSLKALNLSKCQNISHVGLSSLIKGADY 279 (468)
Q Consensus 200 ~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~ 279 (468)
.+++|++|++++|.+.......+..+++|++|++++++.+.......+.. +++|++|+++++...... -+..+++
T Consensus 134 ~l~~L~~L~L~~N~i~~~~~~~~~~l~~L~~L~l~~~~~l~~i~~~~~~~-l~~L~~L~L~~n~l~~~~----~~~~l~~ 208 (440)
T 3zyj_A 134 YLSKLKELWLRNNPIESIPSYAFNRIPSLRRLDLGELKRLSYISEGAFEG-LSNLRYLNLAMCNLREIP----NLTPLIK 208 (440)
T ss_dssp SCSSCCEEECCSCCCCEECTTTTTTCTTCCEEECCCCTTCCEECTTTTTT-CSSCCEEECTTSCCSSCC----CCTTCSS
T ss_pred ccccCceeeCCCCcccccCHHHhhhCcccCEeCCCCCCCcceeCcchhhc-ccccCeecCCCCcCcccc----ccCCCcc
Confidence 45556666666655543333344556666666666544444332222333 566666666655422111 1334556
Q ss_pred cceEeecCCCCCchhHHHHhhcCCCCCeeEecCCcCChhHHHHHHHhCCCCCeEecccCCCCCHHHHHHHHHhCCCCCeE
Q 012207 280 LQQLILAYSFWVSADLSKCLHNFPMLQSIKFEDCPVARSGIKAIGNWHGSLKELSLSKCSGVTDEELSFVVQSHKELRKL 359 (468)
Q Consensus 280 L~~L~l~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~l~~~~~~L~~L~l~~~~~~~~~~l~~~~~~~~~L~~L 359 (468)
|+.|+++++ .+....+..+..+++|+.|++.+|.+.......+. .+++|++|+++++ .++... ...+..+++|+.|
T Consensus 209 L~~L~Ls~N-~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~-~l~~L~~L~L~~N-~l~~~~-~~~~~~l~~L~~L 284 (440)
T 3zyj_A 209 LDELDLSGN-HLSAIRPGSFQGLMHLQKLWMIQSQIQVIERNAFD-NLQSLVEINLAHN-NLTLLP-HDLFTPLHHLERI 284 (440)
T ss_dssp CCEEECTTS-CCCEECTTTTTTCTTCCEEECTTCCCCEECTTSST-TCTTCCEEECTTS-CCCCCC-TTTTSSCTTCCEE
T ss_pred cCEEECCCC-ccCccChhhhccCccCCEEECCCCceeEEChhhhc-CCCCCCEEECCCC-CCCccC-hhHhccccCCCEE
Confidence 666666665 33434444556666666666666665544333332 4566666666663 333211 1223345666666
Q ss_pred ecCCCC
Q 012207 360 DITCCR 365 (468)
Q Consensus 360 ~l~~~~ 365 (468)
++++|+
T Consensus 285 ~L~~Np 290 (440)
T 3zyj_A 285 HLHHNP 290 (440)
T ss_dssp ECCSSC
T ss_pred EcCCCC
Confidence 666554
|
| >4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV} | Back alignment and structure |
|---|
Probab=99.62 E-value=6.5e-18 Score=151.50 Aligned_cols=225 Identities=15% Similarity=0.195 Sum_probs=151.7
Q ss_pred hCCCccEeeecccCCCCCCccccccCCCCCeeeecCCCCCChHHHHHHHhcCCCCCEEEccCCcccChhhHHHHHhcCCc
Q 012207 200 KCQEIRTLDLSYLPITEKCLPPVVKLQYLEDLVLEGCHGIDDDGLASVEYSCKSLKALNLSKCQNISHVGLSSLIKGADY 279 (468)
Q Consensus 200 ~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~ 279 (468)
..++++.|+++++.+. .....+.++++|++|+++++ .+... ...+.. +++|++|+++++...
T Consensus 79 ~~~~l~~L~L~~n~l~-~lp~~l~~l~~L~~L~L~~n-~l~~l-p~~~~~-l~~L~~L~Ls~n~l~-------------- 140 (328)
T 4fcg_A 79 TQPGRVALELRSVPLP-QFPDQAFRLSHLQHMTIDAA-GLMEL-PDTMQQ-FAGLETLTLARNPLR-------------- 140 (328)
T ss_dssp TSTTCCEEEEESSCCS-SCCSCGGGGTTCSEEEEESS-CCCCC-CSCGGG-GTTCSEEEEESCCCC--------------
T ss_pred cccceeEEEccCCCch-hcChhhhhCCCCCEEECCCC-Cccch-hHHHhc-cCCCCEEECCCCccc--------------
Confidence 4589999999999877 45556777899999999884 33321 122333 666666666665421
Q ss_pred cceEeecCCCCCchhHHHHhhcCCCCCeeEecCCcCChhHHHHHH--------HhCCCCCeEecccCCCCCHHHHHHHHH
Q 012207 280 LQQLILAYSFWVSADLSKCLHNFPMLQSIKFEDCPVARSGIKAIG--------NWHGSLKELSLSKCSGVTDEELSFVVQ 351 (468)
Q Consensus 280 L~~L~l~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~l~--------~~~~~L~~L~l~~~~~~~~~~l~~~~~ 351 (468)
.++..+..+++|++|++++|......+..+. ..+++|++|+++++ .++ .++..+.
T Consensus 141 --------------~lp~~l~~l~~L~~L~L~~n~~~~~~p~~~~~~~~~~~~~~l~~L~~L~L~~n-~l~--~lp~~l~ 203 (328)
T 4fcg_A 141 --------------ALPASIASLNRLRELSIRACPELTELPEPLASTDASGEHQGLVNLQSLRLEWT-GIR--SLPASIA 203 (328)
T ss_dssp --------------CCCGGGGGCTTCCEEEEEEETTCCCCCSCSEEEC-CCCEEESTTCCEEEEEEE-CCC--CCCGGGG
T ss_pred --------------cCcHHHhcCcCCCEEECCCCCCccccChhHhhccchhhhccCCCCCEEECcCC-CcC--cchHhhc
Confidence 2223344555555555555443322222111 14789999999985 454 2444567
Q ss_pred hCCCCCeEecCCCCCCCHHHHHHHHhcCCcCCeEEccCCCCCCHHHHHHHHhcCCCCCEEEccCCCCChhhHHhcccCCC
Q 012207 352 SHKELRKLDITCCRKITYASINSITKTCTSLTSLRMECCKLVSWEAFVLIGQQCQYLEELDITENEVNDEGLKSISRCSK 431 (468)
Q Consensus 352 ~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~ 431 (468)
.+++|++|++++|. ++. +......+++|++|++++|..... ....+ ..+++|+.|++++|.+....+..+..+++
T Consensus 204 ~l~~L~~L~L~~N~-l~~--l~~~l~~l~~L~~L~Ls~n~~~~~-~p~~~-~~l~~L~~L~L~~n~~~~~~p~~~~~l~~ 278 (328)
T 4fcg_A 204 NLQNLKSLKIRNSP-LSA--LGPAIHHLPKLEELDLRGCTALRN-YPPIF-GGRAPLKRLILKDCSNLLTLPLDIHRLTQ 278 (328)
T ss_dssp GCTTCCEEEEESSC-CCC--CCGGGGGCTTCCEEECTTCTTCCB-CCCCT-TCCCCCCEEECTTCTTCCBCCTTGGGCTT
T ss_pred CCCCCCEEEccCCC-CCc--CchhhccCCCCCEEECcCCcchhh-hHHHh-cCCCCCCEEECCCCCchhhcchhhhcCCC
Confidence 88999999999987 432 222345789999999999775432 11122 37899999999999877776677889999
Q ss_pred CCEEeeCCCCccCHHHHHHHHhcCcccCeeecCCC
Q 012207 432 LSSLKLGICSNITDEGLKHVGSTCSMLKELDLYRF 466 (468)
Q Consensus 432 L~~L~l~~~~~l~~~~~~~~~~~~~~L~~L~l~~c 466 (468)
|+.|++++|..++ .++.....+++|+.+.+..+
T Consensus 279 L~~L~L~~n~~~~--~iP~~l~~L~~L~~l~l~~~ 311 (328)
T 4fcg_A 279 LEKLDLRGCVNLS--RLPSLIAQLPANCIILVPPH 311 (328)
T ss_dssp CCEEECTTCTTCC--CCCGGGGGSCTTCEEECCGG
T ss_pred CCEEeCCCCCchh--hccHHHhhccCceEEeCCHH
Confidence 9999999994444 34555568999999987654
|
| >1wwl_A Monocyte differentiation antigen CD14; LPS, immune system; HET: NAG; 2.50A {Mus musculus} | Back alignment and structure |
|---|
Probab=99.61 E-value=4.2e-17 Score=145.46 Aligned_cols=253 Identities=19% Similarity=0.159 Sum_probs=139.6
Q ss_pred cCCCCCeEeccCCcccChHhHHHHHhcCCCCcEEeccCCCC----CChHHH-H-HHHhhCCCccEeeecccCCCCCCccc
Q 012207 148 EAKNLERLWLARCKLITDLGIGRIAACCRKLKLLCLKWCIR----VTDLGV-E-LVALKCQEIRTLDLSYLPITEKCLPP 221 (468)
Q Consensus 148 ~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~----~~~~~~-~-~~~~~~~~L~~L~l~~~~~~~~~~~~ 221 (468)
..++|++|++.++....... +.. .|+.|+++++.. +..... . .-...+++|++|+++++.+.+.....
T Consensus 41 ~~~~L~~l~l~~n~l~~p~~---~~~---~L~~L~L~~n~l~~~~~~~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~ 114 (312)
T 1wwl_A 41 GGRSLEYLLKRVDTEADLGQ---FTD---IIKSLSLKRLTVRAARIPSRILFGALRVLGISGLQELTLENLEVTGTAPPP 114 (312)
T ss_dssp EEEECTTHHHHCCTTCCCHH---HHH---HHHHCCCCEEEEEEEECBHHHHHHHHHHHTTSCCCEEEEEEEBCBSCCCCC
T ss_pred cCCCceeEeecccccccHHH---HHH---HHhhcccccccccCCCcCHHHHHHHHHhcCcCCccEEEccCCcccchhHHH
Confidence 34678888777765411111 222 155556655321 222111 1 11125789999999999887666665
Q ss_pred c--ccCCCCCeeeecCCCCCChHHHHHHHh----cCCCCCEEEccCCcccChhhHHHHHhcCCccceEeecCCCCCchhH
Q 012207 222 V--VKLQYLEDLVLEGCHGIDDDGLASVEY----SCKSLKALNLSKCQNISHVGLSSLIKGADYLQQLILAYSFWVSADL 295 (468)
Q Consensus 222 l--~~~~~L~~L~l~~~~~~~~~~~~~l~~----~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~ 295 (468)
+ ..+++|++|+++++ .+... ...+.. ..++|++|+++++.. ....
T Consensus 115 ~~~~~l~~L~~L~Ls~N-~l~~~-~~~~~~l~~~~~~~L~~L~L~~N~l---------------------------~~~~ 165 (312)
T 1wwl_A 115 LLEATGPDLNILNLRNV-SWATR-DAWLAELQQWLKPGLKVLSIAQAHS---------------------------LNFS 165 (312)
T ss_dssp SSSCCSCCCSEEEEESC-BCSSS-SSHHHHHHTTCCTTCCEEEEESCSC---------------------------CCCC
T ss_pred HHHhcCCCccEEEccCC-CCcch-hHHHHHHHHhhcCCCcEEEeeCCCC---------------------------ccch
Confidence 5 67888999998884 34332 122222 016666666666542 1122
Q ss_pred HHHhhcCCCCCeeEecCCcCChhH--HHHH-HHhCCCCCeEecccCCCCCH--HHHHHHHHhCCCCCeEecCCCCCCCHH
Q 012207 296 SKCLHNFPMLQSIKFEDCPVARSG--IKAI-GNWHGSLKELSLSKCSGVTD--EELSFVVQSHKELRKLDITCCRKITYA 370 (468)
Q Consensus 296 ~~~l~~~~~L~~L~l~~~~~~~~~--~~~l-~~~~~~L~~L~l~~~~~~~~--~~l~~~~~~~~~L~~L~l~~~~~~~~~ 370 (468)
+..+..+++|++|++++|.+.... +..+ ...+++|++|+++++ .++. .....++..+++|+.|++++|. ++..
T Consensus 166 ~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~~~~l~~L~~L~L~~N-~l~~~~~~~~~~~~~l~~L~~L~Ls~N~-l~~~ 243 (312)
T 1wwl_A 166 CEQVRVFPALSTLDLSDNPELGERGLISALCPLKFPTLQVLALRNA-GMETPSGVCSALAAARVQLQGLDLSHNS-LRDA 243 (312)
T ss_dssp TTTCCCCSSCCEEECCSCTTCHHHHHHHHSCTTSCTTCCEEECTTS-CCCCHHHHHHHHHHTTCCCSEEECTTSC-CCSS
T ss_pred HHHhccCCCCCEEECCCCCcCcchHHHHHHHhccCCCCCEEECCCC-cCcchHHHHHHHHhcCCCCCEEECCCCc-CCcc
Confidence 223445556666666666544321 1121 024566666666664 3432 1122334456677777777665 3321
Q ss_pred HHHHHHhcCCcCCeEEccCCCCCCHHHHHHHHhcCCCCCEEEccCCCCChhhHHhcccCCCCCEEeeCCCCccCH
Q 012207 371 SINSITKTCTSLTSLRMECCKLVSWEAFVLIGQQCQYLEELDITENEVNDEGLKSISRCSKLSSLKLGICSNITD 445 (468)
Q Consensus 371 ~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~l~~ 445 (468)
........+++|++|+++++. ++ .+... -.++|++|++++|.+++.. .+..+++|+.|++++| .+++
T Consensus 244 ~~~~~~~~l~~L~~L~Ls~N~-l~--~ip~~--~~~~L~~L~Ls~N~l~~~p--~~~~l~~L~~L~L~~N-~l~~ 310 (312)
T 1wwl_A 244 AGAPSCDWPSQLNSLNLSFTG-LK--QVPKG--LPAKLSVLDLSYNRLDRNP--SPDELPQVGNLSLKGN-PFLD 310 (312)
T ss_dssp CCCSCCCCCTTCCEEECTTSC-CS--SCCSS--CCSEEEEEECCSSCCCSCC--CTTTSCEEEEEECTTC-TTTC
T ss_pred cchhhhhhcCCCCEEECCCCc-cC--hhhhh--ccCCceEEECCCCCCCCCh--hHhhCCCCCEEeccCC-CCCC
Confidence 100111235778888887754 44 11111 1168999999999888763 2778899999999998 6653
|
| >1ozn_A Reticulon 4 receptor; NOGO receptor, MAD, myelination inhibition, OMGP, MAG, NOGO- signal transduction, neuronal regeneration, ligand binding; HET: NDG MAN NAG BMA; 1.52A {Homo sapiens} SCOP: c.10.2.7 PDB: 1p8t_A* 3kj4_A* | Back alignment and structure |
|---|
Probab=99.61 E-value=8.8e-17 Score=141.65 Aligned_cols=204 Identities=16% Similarity=0.070 Sum_probs=90.9
Q ss_pred CCccEeeecccCCCCCCccccccCCCCCeeeecCCCCCChHHHHHHHhcCCCCCEEEccCCcccChhhHHHHHhcCCccc
Q 012207 202 QEIRTLDLSYLPITEKCLPPVVKLQYLEDLVLEGCHGIDDDGLASVEYSCKSLKALNLSKCQNISHVGLSSLIKGADYLQ 281 (468)
Q Consensus 202 ~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~ 281 (468)
++|++|+++++.+.......+..+++|++|+++++ .+.......+.. +++|++|+++++..+.... ...+..+++|+
T Consensus 32 ~~l~~L~l~~n~i~~~~~~~~~~~~~L~~L~l~~n-~l~~~~~~~~~~-l~~L~~L~l~~n~~l~~~~-~~~~~~l~~L~ 108 (285)
T 1ozn_A 32 AASQRIFLHGNRISHVPAASFRACRNLTILWLHSN-VLARIDAAAFTG-LALLEQLDLSDNAQLRSVD-PATFHGLGRLH 108 (285)
T ss_dssp TTCSEEECTTSCCCEECTTTTTTCTTCCEEECCSS-CCCEECTTTTTT-CTTCCEEECCSCTTCCCCC-TTTTTTCTTCC
T ss_pred CCceEEEeeCCcCCccCHHHcccCCCCCEEECCCC-ccceeCHhhcCC-ccCCCEEeCCCCCCccccC-HHHhcCCcCCC
Confidence 45666666665555433344555566666666553 333222222322 5555555555543111110 01123344555
Q ss_pred eEeecCCCCCchhHHHHhhcCCCCCeeEecCCcCChhHHHHHHHhCCCCCeEecccCCCCCHHHHHHHHHhCCCCCeEec
Q 012207 282 QLILAYSFWVSADLSKCLHNFPMLQSIKFEDCPVARSGIKAIGNWHGSLKELSLSKCSGVTDEELSFVVQSHKELRKLDI 361 (468)
Q Consensus 282 ~L~l~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~l~~~~~~L~~L~l~~~~~~~~~~l~~~~~~~~~L~~L~l 361 (468)
+|+++++. +....+..+..+++|++|++++|.+.......+. .+++|++|+++++ .++... ...+..
T Consensus 109 ~L~l~~n~-l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~-~l~~L~~L~l~~n-~l~~~~-~~~~~~--------- 175 (285)
T 1ozn_A 109 TLHLDRCG-LQELGPGLFRGLAALQYLYLQDNALQALPDDTFR-DLGNLTHLFLHGN-RISSVP-ERAFRG--------- 175 (285)
T ss_dssp EEECTTSC-CCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTT-TCTTCCEEECCSS-CCCEEC-TTTTTT---------
T ss_pred EEECCCCc-CCEECHhHhhCCcCCCEEECCCCcccccCHhHhc-cCCCccEEECCCC-cccccC-HHHhcC---------
Confidence 55555442 2222233345556666666666655432222121 3455555555542 222110 011223
Q ss_pred CCCCCCCHHHHHHHHhcCCcCCeEEccCCCCCCHHHHHHHHhcCCCCCEEEccCCCCChhhHHhcccCCCCCEEeeCCC
Q 012207 362 TCCRKITYASINSITKTCTSLTSLRMECCKLVSWEAFVLIGQQCQYLEELDITENEVNDEGLKSISRCSKLSSLKLGIC 440 (468)
Q Consensus 362 ~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~ 440 (468)
+++|++|+++++. ++......+. .+++|+.|++++|.+++.....+..+++|+.|++++|
T Consensus 176 -----------------l~~L~~L~l~~n~-l~~~~~~~~~-~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~N 235 (285)
T 1ozn_A 176 -----------------LHSLDRLLLHQNR-VAHVHPHAFR-DLGRLMTLYLFANNLSALPTEALAPLRALQYLRLNDN 235 (285)
T ss_dssp -----------------CTTCCEEECCSSC-CCEECTTTTT-TCTTCCEEECCSSCCSCCCHHHHTTCTTCCEEECCSS
T ss_pred -----------------ccccCEEECCCCc-ccccCHhHcc-CcccccEeeCCCCcCCcCCHHHcccCcccCEEeccCC
Confidence 4445555554432 2222111222 4455555555555555554444555555555555555
|
| >1ozn_A Reticulon 4 receptor; NOGO receptor, MAD, myelination inhibition, OMGP, MAG, NOGO- signal transduction, neuronal regeneration, ligand binding; HET: NDG MAN NAG BMA; 1.52A {Homo sapiens} SCOP: c.10.2.7 PDB: 1p8t_A* 3kj4_A* | Back alignment and structure |
|---|
Probab=99.60 E-value=8.3e-17 Score=141.79 Aligned_cols=206 Identities=17% Similarity=0.150 Sum_probs=119.9
Q ss_pred CCCCCeeeecCCCCCChHHHHHHHhcCCCCCEEEccCCcccChhhHHHHHhcCCccceEeecCCCCCchhHHHHhhcCCC
Q 012207 225 LQYLEDLVLEGCHGIDDDGLASVEYSCKSLKALNLSKCQNISHVGLSSLIKGADYLQQLILAYSFWVSADLSKCLHNFPM 304 (468)
Q Consensus 225 ~~~L~~L~l~~~~~~~~~~~~~l~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~ 304 (468)
.++|++|+++++ .+.......+.. +++|++|+++++.. .... ...+..+++|++|+++++..+....+..+..+++
T Consensus 31 ~~~l~~L~l~~n-~i~~~~~~~~~~-~~~L~~L~l~~n~l-~~~~-~~~~~~l~~L~~L~l~~n~~l~~~~~~~~~~l~~ 106 (285)
T 1ozn_A 31 PAASQRIFLHGN-RISHVPAASFRA-CRNLTILWLHSNVL-ARID-AAAFTGLALLEQLDLSDNAQLRSVDPATFHGLGR 106 (285)
T ss_dssp CTTCSEEECTTS-CCCEECTTTTTT-CTTCCEEECCSSCC-CEEC-TTTTTTCTTCCEEECCSCTTCCCCCTTTTTTCTT
T ss_pred CCCceEEEeeCC-cCCccCHHHccc-CCCCCEEECCCCcc-ceeC-HhhcCCccCCCEEeCCCCCCccccCHHHhcCCcC
Confidence 457777777773 444333223333 66677777766532 1110 1112334455555555443222222333344444
Q ss_pred CCeeEecCCcCChhHHHHHHHhCCCCCeEecccCCCCCHHHHHHHHHhCCCCCeEecCCCCCCCHHHHHHHHhcCCcCCe
Q 012207 305 LQSIKFEDCPVARSGIKAIGNWHGSLKELSLSKCSGVTDEELSFVVQSHKELRKLDITCCRKITYASINSITKTCTSLTS 384 (468)
Q Consensus 305 L~~L~l~~~~~~~~~~~~l~~~~~~L~~L~l~~~~~~~~~~l~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~ 384 (468)
|++|++.+|.+.... ...+..+++|++|++++|. ++.... .....+++|++
T Consensus 107 L~~L~l~~n~l~~~~---------------------------~~~~~~l~~L~~L~l~~n~-l~~~~~-~~~~~l~~L~~ 157 (285)
T 1ozn_A 107 LHTLHLDRCGLQELG---------------------------PGLFRGLAALQYLYLQDNA-LQALPD-DTFRDLGNLTH 157 (285)
T ss_dssp CCEEECTTSCCCCCC---------------------------TTTTTTCTTCCEEECCSSC-CCCCCT-TTTTTCTTCCE
T ss_pred CCEEECCCCcCCEEC---------------------------HhHhhCCcCCCEEECCCCc-ccccCH-hHhccCCCccE
Confidence 444444444333211 1123345666666666654 221111 11235778888
Q ss_pred EEccCCCCCCHHHHHHHHhcCCCCCEEEccCCCCChhhHHhcccCCCCCEEeeCCCCccCHHHHHHHHhcCcccCeeecC
Q 012207 385 LRMECCKLVSWEAFVLIGQQCQYLEELDITENEVNDEGLKSISRCSKLSSLKLGICSNITDEGLKHVGSTCSMLKELDLY 464 (468)
Q Consensus 385 L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~~L~~L~l~ 464 (468)
|+++++. ++......+. .+++|+.|++++|.+++.....+..+++|+.|++++| .++.... .....+++|+.|+++
T Consensus 158 L~l~~n~-l~~~~~~~~~-~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n-~l~~~~~-~~~~~l~~L~~L~l~ 233 (285)
T 1ozn_A 158 LFLHGNR-ISSVPERAFR-GLHSLDRLLLHQNRVAHVHPHAFRDLGRLMTLYLFAN-NLSALPT-EALAPLRALQYLRLN 233 (285)
T ss_dssp EECCSSC-CCEECTTTTT-TCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSS-CCSCCCH-HHHTTCTTCCEEECC
T ss_pred EECCCCc-ccccCHHHhc-CccccCEEECCCCcccccCHhHccCcccccEeeCCCC-cCCcCCH-HHcccCcccCEEecc
Confidence 8887743 4432222233 7899999999999999887788889999999999999 8886333 345589999999999
Q ss_pred CCC
Q 012207 465 RFS 467 (468)
Q Consensus 465 ~c~ 467 (468)
+|+
T Consensus 234 ~N~ 236 (285)
T 1ozn_A 234 DNP 236 (285)
T ss_dssp SSC
T ss_pred CCC
Confidence 986
|
| >3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium} | Back alignment and structure |
|---|
Probab=99.60 E-value=4.3e-15 Score=143.46 Aligned_cols=152 Identities=17% Similarity=0.034 Sum_probs=77.9
Q ss_pred CCccEEecCCCCcccHHHHHHhhhcCCCCcEEEccCCCccCHHHHHHHHcCCCCCeEeccCCcccChHhHHHHHhcCCCC
Q 012207 99 LTLRSINLSRSRLFTKVGLSSLTVNCRFLTEIDLSNGTEMGDAAAAAIAEAKNLERLWLARCKLITDLGIGRIAACCRKL 178 (468)
Q Consensus 99 ~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L 178 (468)
.+++.|+++++. ++ .++.. ..++|+.|+++++ .+...+. .+++|++|+++++. ++.. ...+++|
T Consensus 40 ~~l~~L~ls~n~-L~--~lp~~--l~~~L~~L~L~~N-~l~~lp~----~l~~L~~L~Ls~N~-l~~l-----p~~l~~L 103 (622)
T 3g06_A 40 NGNAVLNVGESG-LT--TLPDC--LPAHITTLVIPDN-NLTSLPA----LPPELRTLEVSGNQ-LTSL-----PVLPPGL 103 (622)
T ss_dssp HCCCEEECCSSC-CS--CCCSC--CCTTCSEEEECSC-CCSCCCC----CCTTCCEEEECSCC-CSCC-----CCCCTTC
T ss_pred CCCcEEEecCCC-cC--ccChh--hCCCCcEEEecCC-CCCCCCC----cCCCCCEEEcCCCc-CCcC-----CCCCCCC
Confidence 457888887654 22 11111 1267888888877 3443221 46777777777754 3221 1136677
Q ss_pred cEEeccCCCCCChHHHHHHHhhCCCccEeeecccCCCCCCccccccCCCCCeeeecCCCCCChHHHHHHHhcCCCCCEEE
Q 012207 179 KLLCLKWCIRVTDLGVELVALKCQEIRTLDLSYLPITEKCLPPVVKLQYLEDLVLEGCHGIDDDGLASVEYSCKSLKALN 258 (468)
Q Consensus 179 ~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~~L~~L~ 258 (468)
++|+++++. ++..+. .+++|+.|++++|.+... .. .+++|++|++++| .+.... ...++|+.|+
T Consensus 104 ~~L~Ls~N~-l~~l~~-----~l~~L~~L~L~~N~l~~l--p~--~l~~L~~L~Ls~N-~l~~l~-----~~~~~L~~L~ 167 (622)
T 3g06_A 104 LELSIFSNP-LTHLPA-----LPSGLCKLWIFGNQLTSL--PV--LPPGLQELSVSDN-QLASLP-----ALPSELCKLW 167 (622)
T ss_dssp CEEEECSCC-CCCCCC-----CCTTCCEEECCSSCCSCC--CC--CCTTCCEEECCSS-CCSCCC-----CCCTTCCEEE
T ss_pred CEEECcCCc-CCCCCC-----CCCCcCEEECCCCCCCcC--CC--CCCCCCEEECcCC-cCCCcC-----CccCCCCEEE
Confidence 777776652 322111 456677777766655431 11 2366666666664 232211 1245666666
Q ss_pred ccCCcccChhhHHHHHhcCCccceEeecCC
Q 012207 259 LSKCQNISHVGLSSLIKGADYLQQLILAYS 288 (468)
Q Consensus 259 l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~ 288 (468)
+.++.... . ...+++|+.|+++++
T Consensus 168 L~~N~l~~-l-----~~~~~~L~~L~Ls~N 191 (622)
T 3g06_A 168 AYNNQLTS-L-----PMLPSGLQELSVSDN 191 (622)
T ss_dssp CCSSCCSC-C-----CCCCTTCCEEECCSS
T ss_pred CCCCCCCC-C-----cccCCCCcEEECCCC
Confidence 66554211 1 123445555555554
|
| >4glp_A Monocyte differentiation antigen CD14; alpha beta BENT solenoid, LRR, lipopolysaccharide, serum, CD leucine-rich repeat, pattern recognition; 4.00A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.60 E-value=3.2e-16 Score=139.65 Aligned_cols=232 Identities=13% Similarity=0.092 Sum_probs=139.5
Q ss_pred CCCCCeeeecCCCCCChHHHHHHHh--cCCCCCEEEccCCcccChhhHHHHH-hcCCccceEeecCCCCCch---hHHHH
Q 012207 225 LQYLEDLVLEGCHGIDDDGLASVEY--SCKSLKALNLSKCQNISHVGLSSLI-KGADYLQQLILAYSFWVSA---DLSKC 298 (468)
Q Consensus 225 ~~~L~~L~l~~~~~~~~~~~~~l~~--~~~~L~~L~l~~~~~~~~~~~~~~~-~~~~~L~~L~l~~~~~~~~---~~~~~ 298 (468)
...++.+.+.++ .+.+..+..+.. ..++|++|+++++....... ..++ ..+++|++|+++++..... .....
T Consensus 63 ~~~l~~l~l~~~-~~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~-~~~~~~~~~~L~~L~Ls~n~i~~~~~~~~~~~ 140 (310)
T 4glp_A 63 ALRVRRLTVGAA-QVPAQLLVGALRVLAYSRLKELTLEDLKITGTMP-PLPLEATGLALSSLRLRNVSWATGRSWLAELQ 140 (310)
T ss_dssp SCCCCEEEECSC-CCBHHHHHHHHHHHHHSCCCEEEEESCCCBSCCC-CCSSSCCCBCCSSCEEESCCCSSTTSSHHHHH
T ss_pred hcceeEEEEeCC-cCCHHHHHHHHHhcccCceeEEEeeCCEeccchh-hhhhhccCCCCCEEEeecccccchhhhhHHHH
Confidence 345666666663 344433332221 14668888887765322110 1111 5567888888887743221 11133
Q ss_pred hhcCCCCCeeEecCCcCChhHHHHHHHhCCCCCeEecccCCCCCHHHHHH--HHHhCCCCCeEecCCCCCCCHHH-HHHH
Q 012207 299 LHNFPMLQSIKFEDCPVARSGIKAIGNWHGSLKELSLSKCSGVTDEELSF--VVQSHKELRKLDITCCRKITYAS-INSI 375 (468)
Q Consensus 299 l~~~~~L~~L~l~~~~~~~~~~~~l~~~~~~L~~L~l~~~~~~~~~~l~~--~~~~~~~L~~L~l~~~~~~~~~~-~~~~ 375 (468)
+..+++|++|++++|.+.......+. .+++|++|+++++......++.. ....+++|++|++++|..-.... ...+
T Consensus 141 ~~~~~~L~~L~Ls~n~l~~~~~~~~~-~l~~L~~L~Ls~N~l~~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~l~~~~~~l 219 (310)
T 4glp_A 141 QWLKPGLKVLSIAQAHSPAFSCEQVR-AFPALTSLDLSDNPGLGERGLMAALCPHKFPAIQNLALRNTGMETPTGVCAAL 219 (310)
T ss_dssp TTBCSCCCEEEEECCSSCCCCTTSCC-CCTTCCEEECCSCTTCHHHHHHTTSCTTSSCCCCSCBCCSSCCCCHHHHHHHH
T ss_pred hhhccCCCEEEeeCCCcchhhHHHhc-cCCCCCEEECCCCCCccchhhhHHHhhhcCCCCCEEECCCCCCCchHHHHHHH
Confidence 45788888888888887654443333 56788888888853333222222 12467888899998886322222 2223
Q ss_pred HhcCCcCCeEEccCCCCCCHHHHHHHHh--cCCCCCEEEccCCCCChhhHHhcccCCCCCEEeeCCCCccCHHHHHHHHh
Q 012207 376 TKTCTSLTSLRMECCKLVSWEAFVLIGQ--QCQYLEELDITENEVNDEGLKSISRCSKLSSLKLGICSNITDEGLKHVGS 453 (468)
Q Consensus 376 ~~~~~~L~~L~l~~~~~~~~~~~~~~~~--~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~l~~~~~~~~~~ 453 (468)
...+++|++|+++++. ++......+.. .+++|++|++++|.++... ..+ .++|+.|++++| +++. ++. ..
T Consensus 220 ~~~l~~L~~L~Ls~N~-l~~~~p~~~~~~~~~~~L~~L~Ls~N~l~~lp-~~~--~~~L~~L~Ls~N-~l~~--~~~-~~ 291 (310)
T 4glp_A 220 AAAGVQPHSLDLSHNS-LRATVNPSAPRCMWSSALNSLNLSFAGLEQVP-KGL--PAKLRVLDLSSN-RLNR--APQ-PD 291 (310)
T ss_dssp HHHTCCCSSEECTTSC-CCCCCCSCCSSCCCCTTCCCEECCSSCCCSCC-SCC--CSCCSCEECCSC-CCCS--CCC-TT
T ss_pred HhcCCCCCEEECCCCC-CCccchhhHHhccCcCcCCEEECCCCCCCchh-hhh--cCCCCEEECCCC-cCCC--Cch-hh
Confidence 4577889999998854 44322111220 2378999999999888432 233 378999999999 8874 222 35
Q ss_pred cCcccCeeecCCCC
Q 012207 454 TCSMLKELDLYRFS 467 (468)
Q Consensus 454 ~~~~L~~L~l~~c~ 467 (468)
.+++|+.|++++|+
T Consensus 292 ~l~~L~~L~L~~N~ 305 (310)
T 4glp_A 292 ELPEVDNLTLDGNP 305 (310)
T ss_dssp SCCCCSCEECSSTT
T ss_pred hCCCccEEECcCCC
Confidence 78999999999886
|
| >3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium} | Back alignment and structure |
|---|
Probab=99.59 E-value=1.7e-15 Score=146.26 Aligned_cols=265 Identities=16% Similarity=0.088 Sum_probs=185.5
Q ss_pred CCCcEEEccCCCccCHHHHHHHHcCCCCCeEeccCCcccChHhHHHHHhcCCCCcEEeccCCCCCChHHHHHHHhhCCCc
Q 012207 125 RFLTEIDLSNGTEMGDAAAAAIAEAKNLERLWLARCKLITDLGIGRIAACCRKLKLLCLKWCIRVTDLGVELVALKCQEI 204 (468)
Q Consensus 125 ~~L~~L~l~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L 204 (468)
.+++.|+++++. ++..+ ..+ .++|++|++.++. ++. +...+++|++|+++++. ++..+. .+++|
T Consensus 40 ~~l~~L~ls~n~-L~~lp-~~l--~~~L~~L~L~~N~-l~~-----lp~~l~~L~~L~Ls~N~-l~~lp~-----~l~~L 103 (622)
T 3g06_A 40 NGNAVLNVGESG-LTTLP-DCL--PAHITTLVIPDNN-LTS-----LPALPPELRTLEVSGNQ-LTSLPV-----LPPGL 103 (622)
T ss_dssp HCCCEEECCSSC-CSCCC-SCC--CTTCSEEEECSCC-CSC-----CCCCCTTCCEEEECSCC-CSCCCC-----CCTTC
T ss_pred CCCcEEEecCCC-cCccC-hhh--CCCCcEEEecCCC-CCC-----CCCcCCCCCEEEcCCCc-CCcCCC-----CCCCC
Confidence 468999999873 44332 111 2799999999875 432 11247899999999874 443221 67899
Q ss_pred cEeeecccCCCCCCccccccCCCCCeeeecCCCCCChHHHHHHHhcCCCCCEEEccCCcccChhhHHHHHhcCCccceEe
Q 012207 205 RTLDLSYLPITEKCLPPVVKLQYLEDLVLEGCHGIDDDGLASVEYSCKSLKALNLSKCQNISHVGLSSLIKGADYLQQLI 284 (468)
Q Consensus 205 ~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~ 284 (468)
++|++++|.+.... . .+++|+.|+++++ .+.... ..+++|++|+++++....- ....++|+.|+
T Consensus 104 ~~L~Ls~N~l~~l~--~--~l~~L~~L~L~~N-~l~~lp-----~~l~~L~~L~Ls~N~l~~l------~~~~~~L~~L~ 167 (622)
T 3g06_A 104 LELSIFSNPLTHLP--A--LPSGLCKLWIFGN-QLTSLP-----VLPPGLQELSVSDNQLASL------PALPSELCKLW 167 (622)
T ss_dssp CEEEECSCCCCCCC--C--CCTTCCEEECCSS-CCSCCC-----CCCTTCCEEECCSSCCSCC------CCCCTTCCEEE
T ss_pred CEEECcCCcCCCCC--C--CCCCcCEEECCCC-CCCcCC-----CCCCCCCEEECcCCcCCCc------CCccCCCCEEE
Confidence 99999999776422 2 5789999999985 444322 2368999999998863221 12457899999
Q ss_pred ecCCCCCchhHHHHhhcCCCCCeeEecCCcCChhHHHHHHHhCCCCCeEecccCCCCCHHHHHHHHHhCCCCCeEecCCC
Q 012207 285 LAYSFWVSADLSKCLHNFPMLQSIKFEDCPVARSGIKAIGNWHGSLKELSLSKCSGVTDEELSFVVQSHKELRKLDITCC 364 (468)
Q Consensus 285 l~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~l~~~~~~L~~L~l~~~~~~~~~~l~~~~~~~~~L~~L~l~~~ 364 (468)
++++.. .. ++ ..+++|+.|++++|.+.... ...++|+.|+++++ .++. ++ ..+++|+.|++++|
T Consensus 168 L~~N~l-~~-l~---~~~~~L~~L~Ls~N~l~~l~-----~~~~~L~~L~L~~N-~l~~--l~---~~~~~L~~L~Ls~N 231 (622)
T 3g06_A 168 AYNNQL-TS-LP---MLPSGLQELSVSDNQLASLP-----TLPSELYKLWAYNN-RLTS--LP---ALPSGLKELIVSGN 231 (622)
T ss_dssp CCSSCC-SC-CC---CCCTTCCEEECCSSCCSCCC-----CCCTTCCEEECCSS-CCSS--CC---CCCTTCCEEECCSS
T ss_pred CCCCCC-CC-Cc---ccCCCCcEEECCCCCCCCCC-----CccchhhEEECcCC-cccc--cC---CCCCCCCEEEccCC
Confidence 988743 22 22 45689999999999876421 13579999999985 4442 11 23578999999988
Q ss_pred CCCCHHHHHHHHhcCCcCCeEEccCCCCCCHHHHHHHHhcCCCCCEEEccCCCCChhhHHhcccCCCCCEEeeCCCCccC
Q 012207 365 RKITYASINSITKTCTSLTSLRMECCKLVSWEAFVLIGQQCQYLEELDITENEVNDEGLKSISRCSKLSSLKLGICSNIT 444 (468)
Q Consensus 365 ~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~l~ 444 (468)
. ++... ..+++|+.|++++|. ++. + ...+++|+.|++++|.++.. +..+..+++|+.|++++| .++
T Consensus 232 ~-L~~lp-----~~l~~L~~L~Ls~N~-L~~--l---p~~~~~L~~L~Ls~N~L~~l-p~~l~~l~~L~~L~L~~N-~l~ 297 (622)
T 3g06_A 232 R-LTSLP-----VLPSELKELMVSGNR-LTS--L---PMLPSGLLSLSVYRNQLTRL-PESLIHLSSETTVNLEGN-PLS 297 (622)
T ss_dssp C-CSCCC-----CCCTTCCEEECCSSC-CSC--C---CCCCTTCCEEECCSSCCCSC-CGGGGGSCTTCEEECCSC-CCC
T ss_pred c-cCcCC-----CCCCcCcEEECCCCC-CCc--C---CcccccCcEEeCCCCCCCcC-CHHHhhccccCEEEecCC-CCC
Confidence 6 44321 467899999999864 542 1 11568999999999998854 356788999999999999 787
Q ss_pred HHHHHHH
Q 012207 445 DEGLKHV 451 (468)
Q Consensus 445 ~~~~~~~ 451 (468)
......+
T Consensus 298 ~~~~~~l 304 (622)
T 3g06_A 298 ERTLQAL 304 (622)
T ss_dssp HHHHHHH
T ss_pred CcCHHHH
Confidence 6544433
|
| >3un9_A NLR family member X1; leucine rich repeat (LRR), antiviral signaling, MAVS, TRAF6, UQCRC2, immune system; 2.65A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.57 E-value=4.1e-14 Score=128.36 Aligned_cols=172 Identities=17% Similarity=0.219 Sum_probs=137.8
Q ss_pred CCccceEeecCCCCCchhHHHHh----hc-CCCCCeeEecCCcCChhHHHHHHHhCCCCCeEecccCCCCCHHHHHHHHH
Q 012207 277 ADYLQQLILAYSFWVSADLSKCL----HN-FPMLQSIKFEDCPVARSGIKAIGNWHGSLKELSLSKCSGVTDEELSFVVQ 351 (468)
Q Consensus 277 ~~~L~~L~l~~~~~~~~~~~~~l----~~-~~~L~~L~l~~~~~~~~~~~~l~~~~~~L~~L~l~~~~~~~~~~l~~~~~ 351 (468)
.+.|+.|+++++. +.......+ .. .++|++|++++|.+++.+...+...+++|++|++++| .+++.+...+..
T Consensus 71 ~~~L~~L~Ls~n~-l~~~~~~~l~~~L~~~~~~L~~L~Ls~n~l~~~~~~~l~~~L~~L~~L~Ls~n-~l~~~~~~~L~~ 148 (372)
T 3un9_A 71 LSSLRQLNLAGVR-MTPVKCTVVAAVLGSGRHALDEVNLASCQLDPAGLRTLLPVFLRARKLGLQLN-SLGPEACKDLRD 148 (372)
T ss_dssp HTTCCEEECTTSC-CCHHHHHHHHHHHSSCSSCEEEEECTTCCCCHHHHHHTHHHHHTEEEEECCSS-CCCHHHHHHHHH
T ss_pred HhhCCEEEecCCC-CCHHHHHHHHHHHhhCCCCceEEEecCCCCCHHHHHHHHHHHHhccHhhcCCC-CCCHHHHHHHHH
Confidence 4689999999984 555444333 32 3699999999999999998888877889999999995 788877666543
Q ss_pred ----hCCCCCeEecCCCCCCCHHHHHHHH---hcCCcCCeEEccCCCCCCHHHHHHHH---hcCCCCCEEEccCCCCChh
Q 012207 352 ----SHKELRKLDITCCRKITYASINSIT---KTCTSLTSLRMECCKLVSWEAFVLIG---QQCQYLEELDITENEVNDE 421 (468)
Q Consensus 352 ----~~~~L~~L~l~~~~~~~~~~~~~~~---~~~~~L~~L~l~~~~~~~~~~~~~~~---~~~~~L~~L~l~~~~~~~~ 421 (468)
..++|++|++++|. +++.+...++ ..+++|++|++++|. +++.+...+. ..+++|++|++++|.+++.
T Consensus 149 ~L~~~~~~L~~L~Ls~n~-l~~~~~~~l~~~L~~~~~L~~L~Ls~N~-l~~~g~~~L~~~L~~~~~L~~L~Ls~N~i~~~ 226 (372)
T 3un9_A 149 LLLHDQCQITTLRLSNNP-LTAAGVAVLMEGLAGNTSVTHLSLLHTG-LGDEGLELLAAQLDRNRQLQELNVAYNGAGDT 226 (372)
T ss_dssp HHHSTTCCCCEEECCSSC-CHHHHHHHHHHHHHTCSSCCEEECTTSS-CHHHHHHHHHHHGGGCSCCCEEECCSSCCCHH
T ss_pred HHHhcCCccceeeCCCCC-CChHHHHHHHHHHhcCCCcCEEeCCCCC-CCcHHHHHHHHHHhcCCCcCeEECCCCCCCHH
Confidence 35889999999986 7777665553 468999999999965 8887765554 3678999999999999998
Q ss_pred hHHhcc----cCCCCCEEeeCCCCccCHHHHHHHHh
Q 012207 422 GLKSIS----RCSKLSSLKLGICSNITDEGLKHVGS 453 (468)
Q Consensus 422 ~~~~l~----~~~~L~~L~l~~~~~l~~~~~~~~~~ 453 (468)
+...+. .+++|+.|++++| .+++.+...+..
T Consensus 227 g~~~l~~~L~~~~~L~~L~Ls~N-~i~~~g~~~L~~ 261 (372)
T 3un9_A 227 AALALARAAREHPSLELLHLYFN-ELSSEGRQVLRD 261 (372)
T ss_dssp HHHHHHHHHHHCSSCCEEECTTS-SCCHHHHHHHHH
T ss_pred HHHHHHHHHHhCCCCCEEeccCC-CCCHHHHHHHHH
Confidence 776654 5799999999999 899998887764
|
| >3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae} | Back alignment and structure |
|---|
Probab=99.56 E-value=1.7e-16 Score=150.11 Aligned_cols=149 Identities=16% Similarity=0.104 Sum_probs=76.0
Q ss_pred ccCCccEEecCCCCcccHHHHHHhhhcCCCCcEEEccCCCccCHHHHHHHHcCCCCCeEeccCCcccChHhHHHHHhcCC
Q 012207 97 WKLTLRSINLSRSRLFTKVGLSSLTVNCRFLTEIDLSNGTEMGDAAAAAIAEAKNLERLWLARCKLITDLGIGRIAACCR 176 (468)
Q Consensus 97 ~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~ 176 (468)
.+++|++|+++++. +....... +..+++|+.|+++++. +.... .+..+++|++|+++++. ++... ..+
T Consensus 32 ~~~~L~~L~Ls~n~-l~~~~~~~-~~~l~~L~~L~Ls~N~-l~~~~--~l~~l~~L~~L~Ls~N~-l~~l~------~~~ 99 (487)
T 3oja_A 32 SAWNVKELDLSGNP-LSQISAAD-LAPFTKLELLNLSSNV-LYETL--DLESLSTLRTLDLNNNY-VQELL------VGP 99 (487)
T ss_dssp TGGGCCEEECCSSC-CCCCCGGG-GTTCTTCCEEECTTSC-CEEEE--ECTTCTTCCEEECCSSE-EEEEE------ECT
T ss_pred cCCCccEEEeeCCc-CCCCCHHH-HhCCCCCCEEEeeCCC-CCCCc--ccccCCCCCEEEecCCc-CCCCC------CCC
Confidence 34467777776653 22211122 2356677777776663 32211 15556666777666653 22211 135
Q ss_pred CCcEEeccCCCCCChHHHHHHHhhCCCccEeeecccCCCCCCccccccCCCCCeeeecCCCCCChHHHHHHHhcCCCCCE
Q 012207 177 KLKLLCLKWCIRVTDLGVELVALKCQEIRTLDLSYLPITEKCLPPVVKLQYLEDLVLEGCHGIDDDGLASVEYSCKSLKA 256 (468)
Q Consensus 177 ~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~~L~~ 256 (468)
+|++|+++++. ++..+. ..+++|+.|++++|.+.......+..+++|++|+++++ .+.......+...+++|+.
T Consensus 100 ~L~~L~L~~N~-l~~~~~----~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~Ls~N-~l~~~~~~~l~~~l~~L~~ 173 (487)
T 3oja_A 100 SIETLHAANNN-ISRVSC----SRGQGKKNIYLANNKITMLRDLDEGCRSRVQYLDLKLN-EIDTVNFAELAASSDTLEH 173 (487)
T ss_dssp TCCEEECCSSC-CCCEEE----CCCSSCEEEECCSSCCCSGGGBCGGGGSSEEEEECTTS-CCCEEEGGGGGGGTTTCCE
T ss_pred CcCEEECcCCc-CCCCCc----cccCCCCEEECCCCCCCCCCchhhcCCCCCCEEECCCC-CCCCcChHHHhhhCCcccE
Confidence 66666666653 222111 13456666666666655544445555666666666663 3333333333323566666
Q ss_pred EEccCCc
Q 012207 257 LNLSKCQ 263 (468)
Q Consensus 257 L~l~~~~ 263 (468)
|+++++.
T Consensus 174 L~Ls~N~ 180 (487)
T 3oja_A 174 LNLQYNF 180 (487)
T ss_dssp EECTTSC
T ss_pred EecCCCc
Confidence 6666554
|
| >4glp_A Monocyte differentiation antigen CD14; alpha beta BENT solenoid, LRR, lipopolysaccharide, serum, CD leucine-rich repeat, pattern recognition; 4.00A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.55 E-value=6e-15 Score=131.41 Aligned_cols=229 Identities=16% Similarity=0.121 Sum_probs=130.7
Q ss_pred CCCcEEeccCCCCCChHHHHHHHh--hCCCccEeeecccCCCCCCcccc--ccCCCCCeeeecCCCCCChH----HHHHH
Q 012207 176 RKLKLLCLKWCIRVTDLGVELVAL--KCQEIRTLDLSYLPITEKCLPPV--VKLQYLEDLVLEGCHGIDDD----GLASV 247 (468)
Q Consensus 176 ~~L~~L~l~~~~~~~~~~~~~~~~--~~~~L~~L~l~~~~~~~~~~~~l--~~~~~L~~L~l~~~~~~~~~----~~~~l 247 (468)
..++.+.+..+ .+++..+..+.. .+++|++|+++++.+.......+ ..+++|++|+++++. +... ....+
T Consensus 64 ~~l~~l~l~~~-~~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~~~~L~~L~Ls~n~-i~~~~~~~~~~~~ 141 (310)
T 4glp_A 64 LRVRRLTVGAA-QVPAQLLVGALRVLAYSRLKELTLEDLKITGTMPPLPLEATGLALSSLRLRNVS-WATGRSWLAELQQ 141 (310)
T ss_dssp CCCCEEEECSC-CCBHHHHHHHHHHHHHSCCCEEEEESCCCBSCCCCCSSSCCCBCCSSCEEESCC-CSSTTSSHHHHHT
T ss_pred cceeEEEEeCC-cCCHHHHHHHHHhcccCceeEEEeeCCEeccchhhhhhhccCCCCCEEEeeccc-ccchhhhhHHHHh
Confidence 34666666664 344443332221 45779999999998877666666 778999999999854 3321 11222
Q ss_pred HhcCCCCCEEEccCCcccChhhHHHHHhcCCccceEeecCCCCCchhHHHHhhcCCCCCeeEecCCcCChhHHH---HHH
Q 012207 248 EYSCKSLKALNLSKCQNISHVGLSSLIKGADYLQQLILAYSFWVSADLSKCLHNFPMLQSIKFEDCPVARSGIK---AIG 324 (468)
Q Consensus 248 ~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~---~l~ 324 (468)
. .+++|++|+++++.. ....+..+..+++|++|++++|.+...... ...
T Consensus 142 ~-~~~~L~~L~Ls~n~l---------------------------~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~~ 193 (310)
T 4glp_A 142 W-LKPGLKVLSIAQAHS---------------------------PAFSCEQVRAFPALTSLDLSDNPGLGERGLMAALCP 193 (310)
T ss_dssp T-BCSCCCEEEEECCSS---------------------------CCCCTTSCCCCTTCCEEECCSCTTCHHHHHHTTSCT
T ss_pred h-hccCCCEEEeeCCCc---------------------------chhhHHHhccCCCCCEEECCCCCCccchhhhHHHhh
Confidence 2 366777777766542 111122334455666666666654432111 111
Q ss_pred HhCCCCCeEecccCCCCCH--HHHHHHHHhCCCCCeEecCCCCCCCHHHHHHHHhc---CCcCCeEEccCCCCCCHHHHH
Q 012207 325 NWHGSLKELSLSKCSGVTD--EELSFVVQSHKELRKLDITCCRKITYASINSITKT---CTSLTSLRMECCKLVSWEAFV 399 (468)
Q Consensus 325 ~~~~~L~~L~l~~~~~~~~--~~l~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~---~~~L~~L~l~~~~~~~~~~~~ 399 (468)
..+++|++|++++| .++. .....++..+++|++|++++|. ++......+ .. +++|++|+++++. ++. +.
T Consensus 194 ~~l~~L~~L~Ls~N-~l~~l~~~~~~l~~~l~~L~~L~Ls~N~-l~~~~p~~~-~~~~~~~~L~~L~Ls~N~-l~~--lp 267 (310)
T 4glp_A 194 HKFPAIQNLALRNT-GMETPTGVCAALAAAGVQPHSLDLSHNS-LRATVNPSA-PRCMWSSALNSLNLSFAG-LEQ--VP 267 (310)
T ss_dssp TSSCCCCSCBCCSS-CCCCHHHHHHHHHHHTCCCSSEECTTSC-CCCCCCSCC-SSCCCCTTCCCEECCSSC-CCS--CC
T ss_pred hcCCCCCEEECCCC-CCCchHHHHHHHHhcCCCCCEEECCCCC-CCccchhhH-HhccCcCcCCEEECCCCC-CCc--hh
Confidence 24566777777664 3432 1112234566777777777665 322110001 12 2688888887744 441 11
Q ss_pred HHHhcCCCCCEEEccCCCCChhhHHhcccCCCCCEEeeCCCCccCH
Q 012207 400 LIGQQCQYLEELDITENEVNDEGLKSISRCSKLSSLKLGICSNITD 445 (468)
Q Consensus 400 ~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~l~~ 445 (468)
.. -.++|++|++++|.++... .+..+++|+.|++++| .+++
T Consensus 268 ~~--~~~~L~~L~Ls~N~l~~~~--~~~~l~~L~~L~L~~N-~l~~ 308 (310)
T 4glp_A 268 KG--LPAKLRVLDLSSNRLNRAP--QPDELPEVDNLTLDGN-PFLV 308 (310)
T ss_dssp SC--CCSCCSCEECCSCCCCSCC--CTTSCCCCSCEECSST-TTSC
T ss_pred hh--hcCCCCEEECCCCcCCCCc--hhhhCCCccEEECcCC-CCCC
Confidence 11 2378999999999888642 2567889999999999 7664
|
| >3un9_A NLR family member X1; leucine rich repeat (LRR), antiviral signaling, MAVS, TRAF6, UQCRC2, immune system; 2.65A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.54 E-value=1.3e-13 Score=125.05 Aligned_cols=190 Identities=14% Similarity=0.168 Sum_probs=140.9
Q ss_pred CCCCCEEEccCCcccChhhHHHH---Hhc-CCccceEeecCCCCCchhHHHHh-hcCCCCCeeEecCCcCChhHHHHHHH
Q 012207 251 CKSLKALNLSKCQNISHVGLSSL---IKG-ADYLQQLILAYSFWVSADLSKCL-HNFPMLQSIKFEDCPVARSGIKAIGN 325 (468)
Q Consensus 251 ~~~L~~L~l~~~~~~~~~~~~~~---~~~-~~~L~~L~l~~~~~~~~~~~~~l-~~~~~L~~L~l~~~~~~~~~~~~l~~ 325 (468)
.+.|+.|+++++. ++..+...+ +.. .++|++|+++++. +.+.....+ ..+++|++|++++|.+++.+...++.
T Consensus 71 ~~~L~~L~Ls~n~-l~~~~~~~l~~~L~~~~~~L~~L~Ls~n~-l~~~~~~~l~~~L~~L~~L~Ls~n~l~~~~~~~L~~ 148 (372)
T 3un9_A 71 LSSLRQLNLAGVR-MTPVKCTVVAAVLGSGRHALDEVNLASCQ-LDPAGLRTLLPVFLRARKLGLQLNSLGPEACKDLRD 148 (372)
T ss_dssp HTTCCEEECTTSC-CCHHHHHHHHHHHSSCSSCEEEEECTTCC-CCHHHHHHTHHHHHTEEEEECCSSCCCHHHHHHHHH
T ss_pred HhhCCEEEecCCC-CCHHHHHHHHHHHhhCCCCceEEEecCCC-CCHHHHHHHHHHHHhccHhhcCCCCCCHHHHHHHHH
Confidence 5789999999987 555444333 332 3699999999984 554444333 35678999999999999988887764
Q ss_pred ----hCCCCCeEecccCCCCCHHHHHHH---HHhCCCCCeEecCCCCCCCHHHHHHHH---hcCCcCCeEEccCCCCCCH
Q 012207 326 ----WHGSLKELSLSKCSGVTDEELSFV---VQSHKELRKLDITCCRKITYASINSIT---KTCTSLTSLRMECCKLVSW 395 (468)
Q Consensus 326 ----~~~~L~~L~l~~~~~~~~~~l~~~---~~~~~~L~~L~l~~~~~~~~~~~~~~~---~~~~~L~~L~l~~~~~~~~ 395 (468)
..++|++|++++| .+++.+...+ +..+++|++|++++|. +++.++..+. ...++|++|++++|. +++
T Consensus 149 ~L~~~~~~L~~L~Ls~n-~l~~~~~~~l~~~L~~~~~L~~L~Ls~N~-l~~~g~~~L~~~L~~~~~L~~L~Ls~N~-i~~ 225 (372)
T 3un9_A 149 LLLHDQCQITTLRLSNN-PLTAAGVAVLMEGLAGNTSVTHLSLLHTG-LGDEGLELLAAQLDRNRQLQELNVAYNG-AGD 225 (372)
T ss_dssp HHHSTTCCCCEEECCSS-CCHHHHHHHHHHHHHTCSSCCEEECTTSS-CHHHHHHHHHHHGGGCSCCCEEECCSSC-CCH
T ss_pred HHHhcCCccceeeCCCC-CCChHHHHHHHHHHhcCCCcCEEeCCCCC-CCcHHHHHHHHHHhcCCCcCeEECCCCC-CCH
Confidence 3578999999996 6877665544 4567999999999987 8877765544 457899999999964 888
Q ss_pred HHHHHHHh---cCCCCCEEEccCCCCChhhHHhcccCC--C---CCEEe--eCCCCccCHH
Q 012207 396 EAFVLIGQ---QCQYLEELDITENEVNDEGLKSISRCS--K---LSSLK--LGICSNITDE 446 (468)
Q Consensus 396 ~~~~~~~~---~~~~L~~L~l~~~~~~~~~~~~l~~~~--~---L~~L~--l~~~~~l~~~ 446 (468)
.+...+.. .+++|++|++++|.+++.+...+.... . |+.+. +.++ .+++.
T Consensus 226 ~g~~~l~~~L~~~~~L~~L~Ls~N~i~~~g~~~L~~~~~~~~~~L~~l~~ll~~~-~~~~~ 285 (372)
T 3un9_A 226 TAALALARAAREHPSLELLHLYFNELSSEGRQVLRDLGGAAEGGARVVVSLTEGT-AVSEY 285 (372)
T ss_dssp HHHHHHHHHHHHCSSCCEEECTTSSCCHHHHHHHHHCC------CEEECCCC-----CHHH
T ss_pred HHHHHHHHHHHhCCCCCEEeccCCCCCHHHHHHHHHHhcCCCccchhhHhhhcCC-ccCHH
Confidence 77666543 579999999999999999988876432 2 77777 6666 66654
|
| >1h6u_A Internalin H; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.8A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 | Back alignment and structure |
|---|
Probab=99.53 E-value=2.2e-14 Score=127.35 Aligned_cols=195 Identities=18% Similarity=0.199 Sum_probs=133.4
Q ss_pred ccccCCCCCeeeecCCCCCChHHHHHHHhcCCCCCEEEccCCcccChhhHHHHHhcCCccceEeecCCCCCchhHHHHhh
Q 012207 221 PVVKLQYLEDLVLEGCHGIDDDGLASVEYSCKSLKALNLSKCQNISHVGLSSLIKGADYLQQLILAYSFWVSADLSKCLH 300 (468)
Q Consensus 221 ~l~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~l~ 300 (468)
....+++|++|+++++ .+.... .+.. +++|+.|+++++....... +..+++|+.|+++++. +... ..+.
T Consensus 36 ~~~~l~~L~~L~l~~~-~i~~l~--~~~~-l~~L~~L~L~~n~i~~~~~----~~~l~~L~~L~L~~n~-l~~~--~~~~ 104 (308)
T 1h6u_A 36 TQADLDGITTLSAFGT-GVTTIE--GVQY-LNNLIGLELKDNQITDLAP----LKNLTKITELELSGNP-LKNV--SAIA 104 (308)
T ss_dssp CHHHHHTCCEEECTTS-CCCCCT--TGGG-CTTCCEEECCSSCCCCCGG----GTTCCSCCEEECCSCC-CSCC--GGGT
T ss_pred cHHHcCCcCEEEeeCC-CccCch--hhhc-cCCCCEEEccCCcCCCChh----HccCCCCCEEEccCCc-CCCc--hhhc
Confidence 3456889999999985 344322 3444 8999999999886332222 6678889999998874 3322 3577
Q ss_pred cCCCCCeeEecCCcCChhHHHHHHHhCCCCCeEecccCCCCCHHHHHHHHHhCCCCCeEecCCCCCCCHHHHHHHHhcCC
Q 012207 301 NFPMLQSIKFEDCPVARSGIKAIGNWHGSLKELSLSKCSGVTDEELSFVVQSHKELRKLDITCCRKITYASINSITKTCT 380 (468)
Q Consensus 301 ~~~~L~~L~l~~~~~~~~~~~~l~~~~~~L~~L~l~~~~~~~~~~l~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~ 380 (468)
.+++|++|++++|.+.+... + ..+++|++|+++++ .++.. .. +..+++|+.|++++|. +++... ...++
T Consensus 105 ~l~~L~~L~l~~n~l~~~~~--l-~~l~~L~~L~l~~n-~l~~~--~~-l~~l~~L~~L~l~~n~-l~~~~~---l~~l~ 173 (308)
T 1h6u_A 105 GLQSIKTLDLTSTQITDVTP--L-AGLSNLQVLYLDLN-QITNI--SP-LAGLTNLQYLSIGNAQ-VSDLTP---LANLS 173 (308)
T ss_dssp TCTTCCEEECTTSCCCCCGG--G-TTCTTCCEEECCSS-CCCCC--GG-GGGCTTCCEEECCSSC-CCCCGG---GTTCT
T ss_pred CCCCCCEEECCCCCCCCchh--h-cCCCCCCEEECCCC-ccCcC--cc-ccCCCCccEEEccCCc-CCCChh---hcCCC
Confidence 88889999998888765432 3 36788888888885 44432 22 5577888888888875 433221 35678
Q ss_pred cCCeEEccCCCCCCHHHHHHHHhcCCCCCEEEccCCCCChhhHHhcccCCCCCEEeeCCCCccC
Q 012207 381 SLTSLRMECCKLVSWEAFVLIGQQCQYLEELDITENEVNDEGLKSISRCSKLSSLKLGICSNIT 444 (468)
Q Consensus 381 ~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~l~ 444 (468)
+|+.|++++|. ++... .+ ..+++|+.|++++|.+++.. .+..+++|+.|++++| .++
T Consensus 174 ~L~~L~l~~n~-l~~~~--~l-~~l~~L~~L~L~~N~l~~~~--~l~~l~~L~~L~l~~N-~i~ 230 (308)
T 1h6u_A 174 KLTTLKADDNK-ISDIS--PL-ASLPNLIEVHLKNNQISDVS--PLANTSNLFIVTLTNQ-TIT 230 (308)
T ss_dssp TCCEEECCSSC-CCCCG--GG-GGCTTCCEEECTTSCCCBCG--GGTTCTTCCEEEEEEE-EEE
T ss_pred CCCEEECCCCc-cCcCh--hh-cCCCCCCEEEccCCccCccc--cccCCCCCCEEEccCC-eee
Confidence 88888888754 43322 13 37788888888888887765 3677888888888888 565
|
| >1h6u_A Internalin H; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.8A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 | Back alignment and structure |
|---|
Probab=99.52 E-value=6e-14 Score=124.57 Aligned_cols=195 Identities=18% Similarity=0.148 Sum_probs=146.1
Q ss_pred hCCCccEeeecccCCCCCCccccccCCCCCeeeecCCCCCChHHHHHHHhcCCCCCEEEccCCcccChhhHHHHHhcCCc
Q 012207 200 KCQEIRTLDLSYLPITEKCLPPVVKLQYLEDLVLEGCHGIDDDGLASVEYSCKSLKALNLSKCQNISHVGLSSLIKGADY 279 (468)
Q Consensus 200 ~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~ 279 (468)
.+++|++|+++++.+.. +..+..+++|++|+++++ .+..... +. .+++|++|+++++...... .+..+++
T Consensus 39 ~l~~L~~L~l~~~~i~~--l~~~~~l~~L~~L~L~~n-~i~~~~~--~~-~l~~L~~L~L~~n~l~~~~----~~~~l~~ 108 (308)
T 1h6u_A 39 DLDGITTLSAFGTGVTT--IEGVQYLNNLIGLELKDN-QITDLAP--LK-NLTKITELELSGNPLKNVS----AIAGLQS 108 (308)
T ss_dssp HHHTCCEEECTTSCCCC--CTTGGGCTTCCEEECCSS-CCCCCGG--GT-TCCSCCEEECCSCCCSCCG----GGTTCTT
T ss_pred HcCCcCEEEeeCCCccC--chhhhccCCCCEEEccCC-cCCCChh--Hc-cCCCCCEEEccCCcCCCch----hhcCCCC
Confidence 56799999999997764 446788999999999995 4544332 44 4899999999998733221 2567899
Q ss_pred cceEeecCCCCCchhHHHHhhcCCCCCeeEecCCcCChhHHHHHHHhCCCCCeEecccCCCCCHHHHHHHHHhCCCCCeE
Q 012207 280 LQQLILAYSFWVSADLSKCLHNFPMLQSIKFEDCPVARSGIKAIGNWHGSLKELSLSKCSGVTDEELSFVVQSHKELRKL 359 (468)
Q Consensus 280 L~~L~l~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~l~~~~~~L~~L~l~~~~~~~~~~l~~~~~~~~~L~~L 359 (468)
|+.|+++++.. ... ..+..+++|++|++++|.+.+... + ..+++|++|+++++ .+++ +.. +..+++|+.|
T Consensus 109 L~~L~l~~n~l-~~~--~~l~~l~~L~~L~l~~n~l~~~~~--l-~~l~~L~~L~l~~n-~l~~--~~~-l~~l~~L~~L 178 (308)
T 1h6u_A 109 IKTLDLTSTQI-TDV--TPLAGLSNLQVLYLDLNQITNISP--L-AGLTNLQYLSIGNA-QVSD--LTP-LANLSKLTTL 178 (308)
T ss_dssp CCEEECTTSCC-CCC--GGGTTCTTCCEEECCSSCCCCCGG--G-GGCTTCCEEECCSS-CCCC--CGG-GTTCTTCCEE
T ss_pred CCEEECCCCCC-CCc--hhhcCCCCCCEEECCCCccCcCcc--c-cCCCCccEEEccCC-cCCC--Chh-hcCCCCCCEE
Confidence 99999999853 332 237899999999999998876543 3 37899999999986 4553 222 6678999999
Q ss_pred ecCCCCCCCHHHHHHHHhcCCcCCeEEccCCCCCCHHHHHHHHhcCCCCCEEEccCCCCChhh
Q 012207 360 DITCCRKITYASINSITKTCTSLTSLRMECCKLVSWEAFVLIGQQCQYLEELDITENEVNDEG 422 (468)
Q Consensus 360 ~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~ 422 (468)
++++|. +++... ...+++|++|++++|. ++... .+ ..+++|+.|++++|.++...
T Consensus 179 ~l~~n~-l~~~~~---l~~l~~L~~L~L~~N~-l~~~~--~l-~~l~~L~~L~l~~N~i~~~~ 233 (308)
T 1h6u_A 179 KADDNK-ISDISP---LASLPNLIEVHLKNNQ-ISDVS--PL-ANTSNLFIVTLTNQTITNQP 233 (308)
T ss_dssp ECCSSC-CCCCGG---GGGCTTCCEEECTTSC-CCBCG--GG-TTCTTCCEEEEEEEEEECCC
T ss_pred ECCCCc-cCcChh---hcCCCCCCEEEccCCc-cCccc--cc-cCCCCCCEEEccCCeeecCC
Confidence 999986 443221 4579999999999965 54332 23 38999999999999876643
|
| >2z62_A TOLL-like receptor 4, variable lymphocyte recepto; TLR, VLR hybrid, MD-2, LPS, glycoprotein response, inflammatory response, innate immunity; HET: NAG FUL BMA; 1.70A {Homo sapiens} PDB: 2z65_A* 3ul8_A* 3ula_A* 3ul7_A* | Back alignment and structure |
|---|
Probab=99.49 E-value=1.2e-15 Score=133.63 Aligned_cols=35 Identities=20% Similarity=0.191 Sum_probs=24.6
Q ss_pred CCCCEEEccCCCCChhhHHhcccCCCCCEEeeCCC
Q 012207 406 QYLEELDITENEVNDEGLKSISRCSKLSSLKLGIC 440 (468)
Q Consensus 406 ~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~ 440 (468)
.+|+.|++++|.++......+..+++|+.|++++|
T Consensus 200 ~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~N 234 (276)
T 2z62_A 200 IRLKELALDTNQLKSVPDGIFDRLTSLQKIWLHTN 234 (276)
T ss_dssp CCEEEEECCSSCCSCCCTTTTTTCCSCCEEECCSS
T ss_pred CcccEEECCCCceeecCHhHhcccccccEEEccCC
Confidence 46777777777777655455566777777777766
|
| >3e4g_A ATP synthase subunit S, mitochondrial; leucine-rich repeat, CF0, hydrogen ION transport, inner membrane, ION transport, membrane, mitochondrion; 0.96A {Bos taurus} PDB: 3e3z_A 3dze_A 3e2j_A | Back alignment and structure |
|---|
Probab=99.49 E-value=2.4e-14 Score=112.44 Aligned_cols=104 Identities=14% Similarity=0.240 Sum_probs=81.4
Q ss_pred CCCeEecCCCCCCCHHHHHHHHhcCCcCCeEEccCCCCCCHHHHHHHHhc---CCCCCEEEccCC-CCChhhHHhcccCC
Q 012207 355 ELRKLDITCCRKITYASINSITKTCTSLTSLRMECCKLVSWEAFVLIGQQ---CQYLEELDITEN-EVNDEGLKSISRCS 430 (468)
Q Consensus 355 ~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~---~~~L~~L~l~~~-~~~~~~~~~l~~~~ 430 (468)
+|++|++++|. +++.++..+ ..|++|++|++++|..+++.++..+... +++|++|++++| .|||.++..+++++
T Consensus 62 ~L~~LDLs~~~-Itd~GL~~L-~~~~~L~~L~L~~C~~ItD~gL~~L~~~~~~~~~L~~L~Ls~C~~ITD~Gl~~L~~~~ 139 (176)
T 3e4g_A 62 KIQAIDATDSC-IMSIGFDHM-EGLQYVEKIRLCKCHYIEDGCLERLSQLENLQKSMLEMEIISCGNVTDKGIIALHHFR 139 (176)
T ss_dssp CEEEEEEESCC-CCGGGGGGG-TTCSCCCEEEEESCTTCCHHHHHHHHTCHHHHHHCCEEEEESCTTCCHHHHHHGGGCT
T ss_pred eEeEEeCcCCC-ccHHHHHHh-cCCCCCCEEEeCCCCccCHHHHHHHHhcccccCCCCEEEcCCCCcCCHHHHHHHhcCC
Confidence 57778887776 777777666 4688888888888888888888888732 457888888887 68888888888889
Q ss_pred CCCEEeeCCCCccCHHH--HHHHHhcCcccCe
Q 012207 431 KLSSLKLGICSNITDEG--LKHVGSTCSMLKE 460 (468)
Q Consensus 431 ~L~~L~l~~~~~l~~~~--~~~~~~~~~~L~~ 460 (468)
+|+.|++++|+++++.+ ...+.+.+|+++.
T Consensus 140 ~L~~L~L~~c~~Itd~gl~~~~L~~~lP~l~V 171 (176)
T 3e4g_A 140 NLKYLFLSDLPGVKEKEKIVQAFKTSLPSLEL 171 (176)
T ss_dssp TCCEEEEESCTTCCCHHHHHHHHHHHCTTCEE
T ss_pred CCCEEECCCCCCCCchHHHHHHHHHHCCCcEE
Confidence 99999999998898865 4456677888764
|
| >2z62_A TOLL-like receptor 4, variable lymphocyte recepto; TLR, VLR hybrid, MD-2, LPS, glycoprotein response, inflammatory response, innate immunity; HET: NAG FUL BMA; 1.70A {Homo sapiens} PDB: 2z65_A* 3ul8_A* 3ula_A* 3ul7_A* | Back alignment and structure |
|---|
Probab=99.44 E-value=2.9e-15 Score=131.19 Aligned_cols=160 Identities=17% Similarity=0.204 Sum_probs=95.4
Q ss_pred hhcCCCCCeeEecCCcCChhHHHHHHHhCCCCCeEecccCCCCCHHHHHHHHHhCCCCCeEecCCCCCCCHHHHHHHHhc
Q 012207 299 LHNFPMLQSIKFEDCPVARSGIKAIGNWHGSLKELSLSKCSGVTDEELSFVVQSHKELRKLDITCCRKITYASINSITKT 378 (468)
Q Consensus 299 l~~~~~L~~L~l~~~~~~~~~~~~l~~~~~~L~~L~l~~~~~~~~~~l~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~ 378 (468)
+..+++|++|++++|.+.......+. .+++|++|+++++ .+.... ...+..+++|++|++++|. ++...+......
T Consensus 72 ~~~l~~L~~L~L~~n~l~~~~~~~~~-~l~~L~~L~l~~n-~l~~~~-~~~~~~l~~L~~L~l~~n~-l~~~~l~~~~~~ 147 (276)
T 2z62_A 72 YQSLSHLSTLILTGNPIQSLALGAFS-GLSSLQKLVAVET-NLASLE-NFPIGHLKTLKELNVAHNL-IQSFKLPEYFSN 147 (276)
T ss_dssp TTTCTTCCEEECTTCCCCEECTTTTT-TCTTCCEEECTTS-CCCCST-TCCCTTCTTCCEEECCSSC-CCCCCCCGGGGG
T ss_pred ccCCcCCCEEECCCCccCccChhhhc-CCccccEEECCCC-CccccC-chhcccCCCCCEEECcCCc-cceecCchhhcc
Confidence 44455566666665555433322222 4556666666653 222110 0013456777777777765 332212223346
Q ss_pred CCcCCeEEccCCCCCCH---HHHHHHHhcCCCCC-EEEccCCCCChhhHHhcccCCCCCEEeeCCCCccCHHHHHHHHhc
Q 012207 379 CTSLTSLRMECCKLVSW---EAFVLIGQQCQYLE-ELDITENEVNDEGLKSISRCSKLSSLKLGICSNITDEGLKHVGST 454 (468)
Q Consensus 379 ~~~L~~L~l~~~~~~~~---~~~~~~~~~~~~L~-~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~l~~~~~~~~~~~ 454 (468)
+++|++|++++|. ++. ..+..+. .++.|. .|++++|.++......+ ...+|+.|++++| .++... ......
T Consensus 148 l~~L~~L~Ls~N~-l~~~~~~~~~~l~-~L~~l~l~L~ls~n~l~~~~~~~~-~~~~L~~L~L~~n-~l~~~~-~~~~~~ 222 (276)
T 2z62_A 148 LTNLEHLDLSSNK-IQSIYCTDLRVLH-QMPLLNLSLDLSLNPMNFIQPGAF-KEIRLKELALDTN-QLKSVP-DGIFDR 222 (276)
T ss_dssp CTTCCEEECCSSC-CCEECGGGGHHHH-TCTTCCEEEECCSSCCCEECTTSS-CSCCEEEEECCSS-CCSCCC-TTTTTT
T ss_pred CCCCCEEECCCCC-CCcCCHHHhhhhh-hccccceeeecCCCcccccCcccc-CCCcccEEECCCC-ceeecC-HhHhcc
Confidence 7888888888754 433 3344333 445555 89999999987654333 3558999999999 787532 233457
Q ss_pred CcccCeeecCCCC
Q 012207 455 CSMLKELDLYRFS 467 (468)
Q Consensus 455 ~~~L~~L~l~~c~ 467 (468)
+++|+.|++++|+
T Consensus 223 l~~L~~L~l~~N~ 235 (276)
T 2z62_A 223 LTSLQKIWLHTNP 235 (276)
T ss_dssp CCSCCEEECCSSC
T ss_pred cccccEEEccCCc
Confidence 9999999999886
|
| >1p9a_G Platelet glycoprotein IB alpha chain precursor; platelet receptors, glycocalicin, leucine rich repeats, BLOO clotting; HET: NAG BMA; 1.70A {Homo sapiens} SCOP: c.10.2.7 PDB: 1ook_G* 1qyy_A* 3pmh_G* 1m0z_A 1m10_B 1sq0_B 1gwb_A* 1p8v_A* 1u0n_D 3p72_A | Back alignment and structure |
|---|
Probab=99.44 E-value=1.2e-14 Score=127.80 Aligned_cols=201 Identities=14% Similarity=0.029 Sum_probs=109.6
Q ss_pred cccCCCCCeeeecCCCCCChHHHHHHHhcCCCCCEEEccCCcccChhhHHHHHhcCCccceEeecCCCCCchhHHHHhhc
Q 012207 222 VVKLQYLEDLVLEGCHGIDDDGLASVEYSCKSLKALNLSKCQNISHVGLSSLIKGADYLQQLILAYSFWVSADLSKCLHN 301 (468)
Q Consensus 222 l~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~l~~ 301 (468)
+.+++++++++++++ .+..... ...++++.|+++++.. .... ...+..+++|+.|+++++. +.... ....
T Consensus 6 ~~~l~~l~~l~~~~~-~l~~ip~----~~~~~l~~L~L~~N~l-~~~~-~~~~~~l~~L~~L~L~~n~-l~~~~--~~~~ 75 (290)
T 1p9a_G 6 VSKVASHLEVNCDKR-NLTALPP----DLPKDTTILHLSENLL-YTFS-LATLMPYTRLTQLNLDRAE-LTKLQ--VDGT 75 (290)
T ss_dssp EECSTTCCEEECTTS-CCSSCCS----CCCTTCCEEECTTSCC-SEEE-GGGGTTCTTCCEEECTTSC-CCEEE--CCSC
T ss_pred ccccCCccEEECCCC-CCCcCCC----CCCCCCCEEEcCCCcC-CccC-HHHhhcCCCCCEEECCCCc-cCccc--CCCC
Confidence 456788888888873 4443221 1135788888887753 2111 1224556778888877763 22211 1156
Q ss_pred CCCCCeeEecCCcCChhHHHHHHHhCCCCCeEecccCCCCCHHHHHHHHHhCCCCCeEecCCCCCCCHHHHHHHHhcCCc
Q 012207 302 FPMLQSIKFEDCPVARSGIKAIGNWHGSLKELSLSKCSGVTDEELSFVVQSHKELRKLDITCCRKITYASINSITKTCTS 381 (468)
Q Consensus 302 ~~~L~~L~l~~~~~~~~~~~~l~~~~~~L~~L~l~~~~~~~~~~l~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~ 381 (468)
+++|+.|++++|.+.... . ....+++|++|+++++ .++.. ....+..+++|+.|++++|. ++... ...+..+++
T Consensus 76 l~~L~~L~Ls~N~l~~l~-~-~~~~l~~L~~L~l~~N-~l~~l-~~~~~~~l~~L~~L~L~~N~-l~~~~-~~~~~~l~~ 149 (290)
T 1p9a_G 76 LPVLGTLDLSHNQLQSLP-L-LGQTLPALTVLDVSFN-RLTSL-PLGALRGLGELQELYLKGNE-LKTLP-PGLLTPTPK 149 (290)
T ss_dssp CTTCCEEECCSSCCSSCC-C-CTTTCTTCCEEECCSS-CCCCC-CSSTTTTCTTCCEEECTTSC-CCCCC-TTTTTTCTT
T ss_pred CCcCCEEECCCCcCCcCc-h-hhccCCCCCEEECCCC-cCccc-CHHHHcCCCCCCEEECCCCC-CCccC-hhhcccccC
Confidence 677777777777665221 1 1125567777777763 33321 01224456677777777664 33211 111234667
Q ss_pred CCeEEccCCCCCCHHHHHHHHhcCCCCCEEEccCCCCChhhHHhcccCCCCCEEeeCCCC
Q 012207 382 LTSLRMECCKLVSWEAFVLIGQQCQYLEELDITENEVNDEGLKSISRCSKLSSLKLGICS 441 (468)
Q Consensus 382 L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~ 441 (468)
|+.|+++++. ++.... .....+++|+.|++++|.++... ..+...++|+.|++++|+
T Consensus 150 L~~L~L~~N~-l~~l~~-~~~~~l~~L~~L~L~~N~l~~ip-~~~~~~~~L~~l~L~~Np 206 (290)
T 1p9a_G 150 LEKLSLANNN-LTELPA-GLLNGLENLDTLLLQENSLYTIP-KGFFGSHLLPFAFLHGNP 206 (290)
T ss_dssp CCEEECTTSC-CSCCCT-TTTTTCTTCCEEECCSSCCCCCC-TTTTTTCCCSEEECCSCC
T ss_pred CCEEECCCCc-CCccCH-HHhcCcCCCCEEECCCCcCCccC-hhhcccccCCeEEeCCCC
Confidence 7777776643 332111 11225667777777777666432 334455667777777663
|
| >2o6q_A Variable lymphocyte receptor A; leucine-rich repeat protein, LRR, immune system; 2.50A {Eptatretus burgeri} | Back alignment and structure |
|---|
Probab=99.44 E-value=5.5e-15 Score=128.86 Aligned_cols=181 Identities=17% Similarity=0.121 Sum_probs=120.6
Q ss_pred CCCCCEEEccCCcccChhhHHHHHhcCCccceEeecCCCCCchhHHHHhhcCCCCCeeEecCCcCChhHHHHHHHhCCCC
Q 012207 251 CKSLKALNLSKCQNISHVGLSSLIKGADYLQQLILAYSFWVSADLSKCLHNFPMLQSIKFEDCPVARSGIKAIGNWHGSL 330 (468)
Q Consensus 251 ~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~l~~~~~~L 330 (468)
.++++.|+++++.. .... ...+..+++|++|+++++. +.......+..+++|++|+++++.+.......+. .+++|
T Consensus 36 ~~~l~~L~l~~n~l-~~~~-~~~~~~l~~L~~L~l~~n~-l~~i~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~-~l~~L 111 (270)
T 2o6q_A 36 PADTKKLDLQSNKL-SSLP-SKAFHRLTKLRLLYLNDNK-LQTLPAGIFKELKNLETLWVTDNKLQALPIGVFD-QLVNL 111 (270)
T ss_dssp CTTCSEEECCSSCC-SCCC-TTSSSSCTTCCEEECCSSC-CSCCCTTTTSSCTTCCEEECCSSCCCCCCTTTTT-TCSSC
T ss_pred CCCCCEEECcCCCC-CeeC-HHHhcCCCCCCEEECCCCc-cCeeChhhhcCCCCCCEEECCCCcCCcCCHhHcc-cccCC
Confidence 35799999998763 2211 1124567899999998873 4333334457789999999999887654333332 67899
Q ss_pred CeEecccCCCCCHHHHHHHHHhCCCCCeEecCCCCCCCHHHHHHHHhcCCcCCeEEccCCCCCCHHHHHHHHhcCCCCCE
Q 012207 331 KELSLSKCSGVTDEELSFVVQSHKELRKLDITCCRKITYASINSITKTCTSLTSLRMECCKLVSWEAFVLIGQQCQYLEE 410 (468)
Q Consensus 331 ~~L~l~~~~~~~~~~l~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~ 410 (468)
++|+++++ .++... ...+..+++|++|++++|. ++.... .....+++|++|+++++. ++......+. .+++|+.
T Consensus 112 ~~L~l~~n-~l~~~~-~~~~~~l~~L~~L~Ls~n~-l~~~~~-~~~~~l~~L~~L~L~~n~-l~~~~~~~~~-~l~~L~~ 185 (270)
T 2o6q_A 112 AELRLDRN-QLKSLP-PRVFDSLTKLTYLSLGYNE-LQSLPK-GVFDKLTSLKELRLYNNQ-LKRVPEGAFD-KLTELKT 185 (270)
T ss_dssp CEEECCSS-CCCCCC-TTTTTTCTTCCEEECCSSC-CCCCCT-TTTTTCTTCCEEECCSSC-CSCCCTTTTT-TCTTCCE
T ss_pred CEEECCCC-ccCeeC-HHHhCcCcCCCEEECCCCc-CCccCH-hHccCCcccceeEecCCc-CcEeChhHhc-cCCCcCE
Confidence 99999884 343211 2224567899999998875 332211 112467889999998854 4332222232 6788999
Q ss_pred EEccCCCCChhhHHhcccCCCCCEEeeCCCC
Q 012207 411 LDITENEVNDEGLKSISRCSKLSSLKLGICS 441 (468)
Q Consensus 411 L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~ 441 (468)
|++++|.++......+..+++|+.|++++|+
T Consensus 186 L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~ 216 (270)
T 2o6q_A 186 LKLDNNQLKRVPEGAFDSLEKLKMLQLQENP 216 (270)
T ss_dssp EECCSSCCSCCCTTTTTTCTTCCEEECCSSC
T ss_pred EECCCCcCCcCCHHHhccccCCCEEEecCCC
Confidence 9999988887665567778889999998884
|
| >3e4g_A ATP synthase subunit S, mitochondrial; leucine-rich repeat, CF0, hydrogen ION transport, inner membrane, ION transport, membrane, mitochondrion; 0.96A {Bos taurus} PDB: 3e3z_A 3dze_A 3e2j_A | Back alignment and structure |
|---|
Probab=99.43 E-value=1.4e-13 Score=108.19 Aligned_cols=105 Identities=19% Similarity=0.213 Sum_probs=76.3
Q ss_pred CCCeeEecCCcCChhHHHHHHHhCCCCCeEecccCCCCCHHHHHHHHHh---CCCCCeEecCCCCCCCHHHHHHHHhcCC
Q 012207 304 MLQSIKFEDCPVARSGIKAIGNWHGSLKELSLSKCSGVTDEELSFVVQS---HKELRKLDITCCRKITYASINSITKTCT 380 (468)
Q Consensus 304 ~L~~L~l~~~~~~~~~~~~l~~~~~~L~~L~l~~~~~~~~~~l~~~~~~---~~~L~~L~l~~~~~~~~~~~~~~~~~~~ 380 (468)
.|++|++++|.+++.++..+. .+++|++|+|++|..+++.++..+... +++|++|++++|..+++.++..+. .++
T Consensus 62 ~L~~LDLs~~~Itd~GL~~L~-~~~~L~~L~L~~C~~ItD~gL~~L~~~~~~~~~L~~L~Ls~C~~ITD~Gl~~L~-~~~ 139 (176)
T 3e4g_A 62 KIQAIDATDSCIMSIGFDHME-GLQYVEKIRLCKCHYIEDGCLERLSQLENLQKSMLEMEIISCGNVTDKGIIALH-HFR 139 (176)
T ss_dssp CEEEEEEESCCCCGGGGGGGT-TCSCCCEEEEESCTTCCHHHHHHHHTCHHHHHHCCEEEEESCTTCCHHHHHHGG-GCT
T ss_pred eEeEEeCcCCCccHHHHHHhc-CCCCCCEEEeCCCCccCHHHHHHHHhcccccCCCCEEEcCCCCcCCHHHHHHHh-cCC
Confidence 577777777777777777774 677888888888877888777776642 457888888888778888877764 578
Q ss_pred cCCeEEccCCCCCCHHH--HHHHHhcCCCCCE
Q 012207 381 SLTSLRMECCKLVSWEA--FVLIGQQCQYLEE 410 (468)
Q Consensus 381 ~L~~L~l~~~~~~~~~~--~~~~~~~~~~L~~ 410 (468)
+|++|++++|+.+++.+ ...+...+|+++.
T Consensus 140 ~L~~L~L~~c~~Itd~gl~~~~L~~~lP~l~V 171 (176)
T 3e4g_A 140 NLKYLFLSDLPGVKEKEKIVQAFKTSLPSLEL 171 (176)
T ss_dssp TCCEEEEESCTTCCCHHHHHHHHHHHCTTCEE
T ss_pred CCCEEECCCCCCCCchHHHHHHHHHHCCCcEE
Confidence 88888888888777765 3444456666553
|
| >3rfs_A Internalin B, repeat modules, variable lymphocyte B; LRR, protein binding, plasma; 1.70A {Listeria monocytogenes} PDB: 3rfj_A | Back alignment and structure |
|---|
Probab=99.42 E-value=1.7e-14 Score=125.78 Aligned_cols=181 Identities=13% Similarity=0.143 Sum_probs=85.9
Q ss_pred cccccCCCCCeeeecCCCCCChHHHHHHHhcCCCCCEEEccCCcccChhhHHHHHhcCCccceEeecCCCCCchhHHHHh
Q 012207 220 PPVVKLQYLEDLVLEGCHGIDDDGLASVEYSCKSLKALNLSKCQNISHVGLSSLIKGADYLQQLILAYSFWVSADLSKCL 299 (468)
Q Consensus 220 ~~l~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~l 299 (468)
.....+++|+.|.+.++. +... ..+.. +++|++|+++++..... ..+..+++|++|+++++ .+.......+
T Consensus 35 ~~~~~l~~L~~L~l~~~~-i~~~--~~l~~-l~~L~~L~l~~n~l~~~----~~l~~l~~L~~L~L~~n-~l~~~~~~~~ 105 (272)
T 3rfs_A 35 VTQNELNSIDQIIANNSD-IKSV--QGIQY-LPNVRYLALGGNKLHDI----SALKELTNLTYLILTGN-QLQSLPNGVF 105 (272)
T ss_dssp ECHHHHTTCCEEECTTSC-CCCC--TTGGG-CTTCCEEECTTSCCCCC----GGGTTCTTCCEEECTTS-CCCCCCTTTT
T ss_pred cccccccceeeeeeCCCC-cccc--ccccc-CCCCcEEECCCCCCCCc----hhhcCCCCCCEEECCCC-ccCccChhHh
Confidence 344456777777777743 3321 12333 67777777776652221 12334555555555554 2222222334
Q ss_pred hcCCCCCeeEecCCcCChhHHHHHHHhCCCCCeEecccCCCCCHHHHHHHHHhCCCCCeEecCCCCCCCHHHHHHHHhcC
Q 012207 300 HNFPMLQSIKFEDCPVARSGIKAIGNWHGSLKELSLSKCSGVTDEELSFVVQSHKELRKLDITCCRKITYASINSITKTC 379 (468)
Q Consensus 300 ~~~~~L~~L~l~~~~~~~~~~~~l~~~~~~L~~L~l~~~~~~~~~~l~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~ 379 (468)
..+++|++|++++|.+....... +..+++|++|++++|. ++... ......+
T Consensus 106 ~~l~~L~~L~L~~n~l~~~~~~~---------------------------~~~l~~L~~L~L~~n~-l~~~~-~~~~~~l 156 (272)
T 3rfs_A 106 DKLTNLKELVLVENQLQSLPDGV---------------------------FDKLTNLTYLNLAHNQ-LQSLP-KGVFDKL 156 (272)
T ss_dssp TTCTTCCEEECTTSCCCCCCTTT---------------------------TTTCTTCCEEECCSSC-CCCCC-TTTTTTC
T ss_pred cCCcCCCEEECCCCcCCccCHHH---------------------------hccCCCCCEEECCCCc-cCccC-HHHhccC
Confidence 44555555555555443222111 2234455555555443 22111 0111245
Q ss_pred CcCCeEEccCCCCCCHHHHHHHHhcCCCCCEEEccCCCCChhhHHhcccCCCCCEEeeCCC
Q 012207 380 TSLTSLRMECCKLVSWEAFVLIGQQCQYLEELDITENEVNDEGLKSISRCSKLSSLKLGIC 440 (468)
Q Consensus 380 ~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~ 440 (468)
++|+.|++++|. ++......+ ..+++|+.|++++|.+++.....+..+++|+.|++++|
T Consensus 157 ~~L~~L~l~~n~-l~~~~~~~~-~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N 215 (272)
T 3rfs_A 157 TNLTELDLSYNQ-LQSLPEGVF-DKLTQLKDLRLYQNQLKSVPDGVFDRLTSLQYIWLHDN 215 (272)
T ss_dssp TTCCEEECCSSC-CCCCCTTTT-TTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSS
T ss_pred ccCCEEECCCCC-cCccCHHHh-cCCccCCEEECCCCcCCccCHHHHhCCcCCCEEEccCC
Confidence 555555555542 332111111 24566666666666666554444555666666666666
|
| >4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes} | Back alignment and structure |
|---|
Probab=99.39 E-value=1.3e-13 Score=113.90 Aligned_cols=149 Identities=18% Similarity=0.163 Sum_probs=70.8
Q ss_pred CCccceEeecCCCCCchhHHHHhhcCCCCCeeEecCCcCChhHHHHHHHhCCCCCeEecccCCCCCHHHHHHHHHhCCCC
Q 012207 277 ADYLQQLILAYSFWVSADLSKCLHNFPMLQSIKFEDCPVARSGIKAIGNWHGSLKELSLSKCSGVTDEELSFVVQSHKEL 356 (468)
Q Consensus 277 ~~~L~~L~l~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~l~~~~~~L~~L~l~~~~~~~~~~l~~~~~~~~~L 356 (468)
+++|+.|+++++. +. .++ .+..+++|++|++++|.+.+.. .+. .+++|++|+++++ .+++.. ...+..+++|
T Consensus 43 l~~L~~L~l~~n~-i~-~l~-~l~~l~~L~~L~l~~n~~~~~~--~l~-~l~~L~~L~l~~n-~l~~~~-~~~l~~l~~L 114 (197)
T 4ezg_A 43 MNSLTYITLANIN-VT-DLT-GIEYAHNIKDLTINNIHATNYN--PIS-GLSNLERLRIMGK-DVTSDK-IPNLSGLTSL 114 (197)
T ss_dssp HHTCCEEEEESSC-CS-CCT-TGGGCTTCSEEEEESCCCSCCG--GGT-TCTTCCEEEEECT-TCBGGG-SCCCTTCTTC
T ss_pred cCCccEEeccCCC-cc-ChH-HHhcCCCCCEEEccCCCCCcch--hhh-cCCCCCEEEeECC-ccCccc-ChhhcCCCCC
Confidence 3566777776652 22 112 3556666666666666544321 222 4556666666653 333211 1112344555
Q ss_pred CeEecCCCCCCCHHHHHHHHhcCCcCCeEEccCCCCCCHHHHHHHHhcCCCCCEEEccCCCCChhhHHhcccCCCCCEEe
Q 012207 357 RKLDITCCRKITYASINSITKTCTSLTSLRMECCKLVSWEAFVLIGQQCQYLEELDITENEVNDEGLKSISRCSKLSSLK 436 (468)
Q Consensus 357 ~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~ 436 (468)
+.|++++|. +++.....+ ..+++|++|++++|..+++.. .+ ..+++|+.|++++|.+++.. .+..+++|+.|+
T Consensus 115 ~~L~Ls~n~-i~~~~~~~l-~~l~~L~~L~L~~n~~i~~~~--~l-~~l~~L~~L~l~~n~i~~~~--~l~~l~~L~~L~ 187 (197)
T 4ezg_A 115 TLLDISHSA-HDDSILTKI-NTLPKVNSIDLSYNGAITDIM--PL-KTLPELKSLNIQFDGVHDYR--GIEDFPKLNQLY 187 (197)
T ss_dssp CEEECCSSB-CBGGGHHHH-TTCSSCCEEECCSCTBCCCCG--GG-GGCSSCCEEECTTBCCCCCT--TGGGCSSCCEEE
T ss_pred CEEEecCCc-cCcHhHHHH-hhCCCCCEEEccCCCCccccH--hh-cCCCCCCEEECCCCCCcChH--HhccCCCCCEEE
Confidence 555555544 332222222 345555555555544233221 12 24555555555555555432 344555555555
Q ss_pred eCCC
Q 012207 437 LGIC 440 (468)
Q Consensus 437 l~~~ 440 (468)
+++|
T Consensus 188 l~~N 191 (197)
T 4ezg_A 188 AFSQ 191 (197)
T ss_dssp ECBC
T ss_pred eeCc
Confidence 5555
|
| >1h6t_A Internalin B; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.6A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 2wqu_A 2uzy_A 2uzx_A 2wqv_A* 2wqw_A 2wqx_A 1d0b_A 1otn_A 1oto_A 1otm_A | Back alignment and structure |
|---|
Probab=99.38 E-value=4.1e-13 Score=118.05 Aligned_cols=169 Identities=20% Similarity=0.174 Sum_probs=100.2
Q ss_pred CCCCCEEEccCCcccChhhHHHHHhcCCccceEeecCCCCCchhHHHHhhcCCCCCeeEecCCcCChhHHHHHHHhCCCC
Q 012207 251 CKSLKALNLSKCQNISHVGLSSLIKGADYLQQLILAYSFWVSADLSKCLHNFPMLQSIKFEDCPVARSGIKAIGNWHGSL 330 (468)
Q Consensus 251 ~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~l~~~~~~L 330 (468)
+++|+.|+++++......+ +..+++|+.|+++++. +..... +..+++|+.|++++|.+.+.. .+ ..+++|
T Consensus 45 l~~L~~L~l~~~~i~~~~~----~~~l~~L~~L~L~~n~-l~~~~~--l~~l~~L~~L~l~~n~l~~~~--~l-~~l~~L 114 (291)
T 1h6t_A 45 LNSIDQIIANNSDIKSVQG----IQYLPNVTKLFLNGNK-LTDIKP--LANLKNLGWLFLDENKVKDLS--SL-KDLKKL 114 (291)
T ss_dssp HHTCCEEECTTSCCCCCTT----GGGCTTCCEEECCSSC-CCCCGG--GTTCTTCCEEECCSSCCCCGG--GG-TTCTTC
T ss_pred cCcccEEEccCCCcccChh----HhcCCCCCEEEccCCc-cCCCcc--cccCCCCCEEECCCCcCCCCh--hh-ccCCCC
Confidence 5678888887765322211 4556777788777763 322222 667777777777777766522 22 256777
Q ss_pred CeEecccCCCCCHHHHHHHHHhCCCCCeEecCCCCCCCHHHHHHHHhcCCcCCeEEccCCCCCCHHHHHHHHhcCCCCCE
Q 012207 331 KELSLSKCSGVTDEELSFVVQSHKELRKLDITCCRKITYASINSITKTCTSLTSLRMECCKLVSWEAFVLIGQQCQYLEE 410 (468)
Q Consensus 331 ~~L~l~~~~~~~~~~l~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~ 410 (468)
++|+++++ .+++. ..+..+++|+.|++++|. ++.. .....+++|+.|++++|. +++... + ..+++|+.
T Consensus 115 ~~L~L~~n-~i~~~---~~l~~l~~L~~L~l~~n~-l~~~---~~l~~l~~L~~L~L~~N~-l~~~~~--l-~~l~~L~~ 182 (291)
T 1h6t_A 115 KSLSLEHN-GISDI---NGLVHLPQLESLYLGNNK-ITDI---TVLSRLTKLDTLSLEDNQ-ISDIVP--L-AGLTKLQN 182 (291)
T ss_dssp CEEECTTS-CCCCC---GGGGGCTTCCEEECCSSC-CCCC---GGGGGCTTCSEEECCSSC-CCCCGG--G-TTCTTCCE
T ss_pred CEEECCCC-cCCCC---hhhcCCCCCCEEEccCCc-CCcc---hhhccCCCCCEEEccCCc-cccchh--h-cCCCccCE
Confidence 77777764 34331 124456777777777665 3322 123456777777777653 333221 2 26677777
Q ss_pred EEccCCCCChhhHHhcccCCCCCEEeeCCCCccC
Q 012207 411 LDITENEVNDEGLKSISRCSKLSSLKLGICSNIT 444 (468)
Q Consensus 411 L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~l~ 444 (468)
|++++|.+++. ..+..+++|+.|++++| .++
T Consensus 183 L~L~~N~i~~l--~~l~~l~~L~~L~l~~n-~i~ 213 (291)
T 1h6t_A 183 LYLSKNHISDL--RALAGLKNLDVLELFSQ-ECL 213 (291)
T ss_dssp EECCSSCCCBC--GGGTTCTTCSEEEEEEE-EEE
T ss_pred EECCCCcCCCC--hhhccCCCCCEEECcCC-ccc
Confidence 77777766664 23566777777777776 544
|
| >3rfs_A Internalin B, repeat modules, variable lymphocyte B; LRR, protein binding, plasma; 1.70A {Listeria monocytogenes} PDB: 3rfj_A | Back alignment and structure |
|---|
Probab=99.38 E-value=1.3e-13 Score=120.17 Aligned_cols=36 Identities=22% Similarity=0.102 Sum_probs=16.2
Q ss_pred hCCCccEeeecccCCCCCCccccccCCCCCeeeecC
Q 012207 200 KCQEIRTLDLSYLPITEKCLPPVVKLQYLEDLVLEG 235 (468)
Q Consensus 200 ~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~ 235 (468)
.+++|++|++++|.+.......+..+++|++|++++
T Consensus 83 ~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~ 118 (272)
T 3rfs_A 83 ELTNLTYLILTGNQLQSLPNGVFDKLTNLKELVLVE 118 (272)
T ss_dssp TCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECTT
T ss_pred CCCCCCEEECCCCccCccChhHhcCCcCCCEEECCC
Confidence 444455555554444433333334444455555444
|
| >2xwt_C Thyrotropin receptor; signaling protein-immune system complex, GPCR, graves' disea autoimmunity, receptor-autoantibody complex; HET: NAG BMA MAN; 1.90A {Homo sapiens} PDB: 3g04_C* | Back alignment and structure |
|---|
Probab=99.32 E-value=3.3e-14 Score=121.57 Aligned_cols=135 Identities=10% Similarity=0.025 Sum_probs=62.0
Q ss_pred CCCCcEEeccCCCCCChHHHHHHHhhCCCccEeeecccCCCCCCccccccCCCCC---eeeecCCCCCChHHHHHHHhcC
Q 012207 175 CRKLKLLCLKWCIRVTDLGVELVALKCQEIRTLDLSYLPITEKCLPPVVKLQYLE---DLVLEGCHGIDDDGLASVEYSC 251 (468)
Q Consensus 175 ~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~---~L~l~~~~~~~~~~~~~l~~~~ 251 (468)
+++|++|+++++..++..+. ..+..+++|++|+++++.+.. +..+..+++|+ +|+++++..+.......+.. +
T Consensus 79 l~~L~~L~l~~~n~l~~i~~-~~f~~l~~L~~L~l~~n~l~~--lp~~~~l~~L~~L~~L~l~~N~~l~~i~~~~~~~-l 154 (239)
T 2xwt_C 79 LSKVTHIEIRNTRNLTYIDP-DALKELPLLKFLGIFNTGLKM--FPDLTKVYSTDIFFILEITDNPYMTSIPVNAFQG-L 154 (239)
T ss_dssp CTTCCEEEEEEETTCCEECT-TSEECCTTCCEEEEEEECCCS--CCCCTTCCBCCSEEEEEEESCTTCCEECTTTTTT-T
T ss_pred CcCCcEEECCCCCCeeEcCH-HHhCCCCCCCEEeCCCCCCcc--ccccccccccccccEEECCCCcchhhcCcccccc-h
Confidence 45555555554222322111 112256677777777766543 22355556665 77777642444333222333 6
Q ss_pred CCCC-EEEccCCcccChhhHHHHHhcCCccceEeecCCCCCchhHHHHhhcC-CCCCeeEecCCcCC
Q 012207 252 KSLK-ALNLSKCQNISHVGLSSLIKGADYLQQLILAYSFWVSADLSKCLHNF-PMLQSIKFEDCPVA 316 (468)
Q Consensus 252 ~~L~-~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~l~~~-~~L~~L~l~~~~~~ 316 (468)
++|+ .|+++++.. ..... ..+.. ++|+.|+++++..+.......+..+ ++|+.|+++++.++
T Consensus 155 ~~L~~~L~l~~n~l-~~i~~-~~~~~-~~L~~L~L~~n~~l~~i~~~~~~~l~~~L~~L~l~~N~l~ 218 (239)
T 2xwt_C 155 CNETLTLKLYNNGF-TSVQG-YAFNG-TKLDAVYLNKNKYLTVIDKDAFGGVYSGPSLLDVSQTSVT 218 (239)
T ss_dssp BSSEEEEECCSCCC-CEECT-TTTTT-CEEEEEECTTCTTCCEECTTTTTTCSBCCSEEECTTCCCC
T ss_pred hcceeEEEcCCCCC-cccCH-hhcCC-CCCCEEEcCCCCCcccCCHHHhhccccCCcEEECCCCccc
Confidence 6666 666665542 11100 01111 4555555555432332222333444 45555555554443
|
| >4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes} | Back alignment and structure |
|---|
Probab=99.32 E-value=5.1e-12 Score=104.25 Aligned_cols=129 Identities=17% Similarity=0.192 Sum_probs=68.7
Q ss_pred CCCCcEEeccCCCCCChHHHHHHHhhCCCccEeeecccCCCCCCccccccCCCCCeeeecCCCCCChHHHHHHHhcCCCC
Q 012207 175 CRKLKLLCLKWCIRVTDLGVELVALKCQEIRTLDLSYLPITEKCLPPVVKLQYLEDLVLEGCHGIDDDGLASVEYSCKSL 254 (468)
Q Consensus 175 ~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~~L 254 (468)
+++|++|+++++ .++... ....+++|++|+++++.+....+..+..+++|++|+++++ .+.+.....+.. +++|
T Consensus 65 l~~L~~L~l~~n-~~~~~~---~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~Ls~n-~i~~~~~~~l~~-l~~L 138 (197)
T 4ezg_A 65 AHNIKDLTINNI-HATNYN---PISGLSNLERLRIMGKDVTSDKIPNLSGLTSLTLLDISHS-AHDDSILTKINT-LPKV 138 (197)
T ss_dssp CTTCSEEEEESC-CCSCCG---GGTTCTTCCEEEEECTTCBGGGSCCCTTCTTCCEEECCSS-BCBGGGHHHHTT-CSSC
T ss_pred CCCCCEEEccCC-CCCcch---hhhcCCCCCEEEeECCccCcccChhhcCCCCCCEEEecCC-ccCcHhHHHHhh-CCCC
Confidence 555666666555 222221 1235677777777777766555666667777777777773 455444455554 6777
Q ss_pred CEEEccCCcccChhhHHHHHhcCCccceEeecCCCCCchhHHHHhhcCCCCCeeEecCCcC
Q 012207 255 KALNLSKCQNISHVGLSSLIKGADYLQQLILAYSFWVSADLSKCLHNFPMLQSIKFEDCPV 315 (468)
Q Consensus 255 ~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~ 315 (468)
++|+++++..+.+.. .+..+++|+.|+++++. +.+. . .+..+++|++|++.++.+
T Consensus 139 ~~L~L~~n~~i~~~~---~l~~l~~L~~L~l~~n~-i~~~-~-~l~~l~~L~~L~l~~N~i 193 (197)
T 4ezg_A 139 NSIDLSYNGAITDIM---PLKTLPELKSLNIQFDG-VHDY-R-GIEDFPKLNQLYAFSQTI 193 (197)
T ss_dssp CEEECCSCTBCCCCG---GGGGCSSCCEEECTTBC-CCCC-T-TGGGCSSCCEEEECBC--
T ss_pred CEEEccCCCCccccH---hhcCCCCCCEEECCCCC-CcCh-H-HhccCCCCCEEEeeCccc
Confidence 777777665333221 23444555555555542 1111 1 344445555555555443
|
| >1m9s_A Internalin B; cell invasion, GW domains, SH3 domains, signaling protein; 2.65A {Listeria monocytogenes} SCOP: b.1.18.15 b.34.11.1 b.34.11.1 b.34.11.1 c.10.2.1 PDB: 2y5q_A | Back alignment and structure |
|---|
Probab=99.31 E-value=1.6e-12 Score=125.41 Aligned_cols=170 Identities=18% Similarity=0.171 Sum_probs=105.8
Q ss_pred CCCCCEEEccCCcccChhhHHHHHhcCCccceEeecCCCCCchhHHHHhhcCCCCCeeEecCCcCChhHHHHHHHhCCCC
Q 012207 251 CKSLKALNLSKCQNISHVGLSSLIKGADYLQQLILAYSFWVSADLSKCLHNFPMLQSIKFEDCPVARSGIKAIGNWHGSL 330 (468)
Q Consensus 251 ~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~l~~~~~~L 330 (468)
+++|+.|+++++...... -+..+++|+.|+++++. +..... +..+++|+.|++++|.+.+.. .+. .+++|
T Consensus 42 L~~L~~L~l~~n~i~~l~----~l~~l~~L~~L~Ls~N~-l~~~~~--l~~l~~L~~L~Ls~N~l~~l~--~l~-~l~~L 111 (605)
T 1m9s_A 42 LNSIDQIIANNSDIKSVQ----GIQYLPNVTKLFLNGNK-LTDIKP--LTNLKNLGWLFLDENKIKDLS--SLK-DLKKL 111 (605)
T ss_dssp HTTCCCCBCTTCCCCCCT----TGGGCTTCCEEECTTSC-CCCCGG--GGGCTTCCEEECCSSCCCCCT--TST-TCTTC
T ss_pred CCCCCEEECcCCCCCCCh----HHccCCCCCEEEeeCCC-CCCChh--hccCCCCCEEECcCCCCCCCh--hhc-cCCCC
Confidence 677888888876532211 14567788888887763 332222 677788888888887766422 222 56778
Q ss_pred CeEecccCCCCCHHHHHHHHHhCCCCCeEecCCCCCCCHHHHHHHHhcCCcCCeEEccCCCCCCHHHHHHHHhcCCCCCE
Q 012207 331 KELSLSKCSGVTDEELSFVVQSHKELRKLDITCCRKITYASINSITKTCTSLTSLRMECCKLVSWEAFVLIGQQCQYLEE 410 (468)
Q Consensus 331 ~~L~l~~~~~~~~~~l~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~ 410 (468)
+.|+++++ .+.+ +. .+..+++|+.|++++|. ++.. .....+++|+.|++++|. ++.... + ..+++|+.
T Consensus 112 ~~L~Ls~N-~l~~--l~-~l~~l~~L~~L~Ls~N~-l~~l---~~l~~l~~L~~L~Ls~N~-l~~~~~--l-~~l~~L~~ 179 (605)
T 1m9s_A 112 KSLSLEHN-GISD--IN-GLVHLPQLESLYLGNNK-ITDI---TVLSRLTKLDTLSLEDNQ-ISDIVP--L-AGLTKLQN 179 (605)
T ss_dssp CEEECTTS-CCCC--CG-GGGGCTTCSEEECCSSC-CCCC---GGGGSCTTCSEEECCSSC-CCCCGG--G-TTCTTCCE
T ss_pred CEEEecCC-CCCC--Cc-cccCCCccCEEECCCCc-cCCc---hhhcccCCCCEEECcCCc-CCCchh--h-ccCCCCCE
Confidence 88888774 3432 11 24567778888887765 3322 223467777777777754 332211 2 36777777
Q ss_pred EEccCCCCChhhHHhcccCCCCCEEeeCCCCccCH
Q 012207 411 LDITENEVNDEGLKSISRCSKLSSLKLGICSNITD 445 (468)
Q Consensus 411 L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~l~~ 445 (468)
|+|++|.+++. ..+..+++|+.|++++| .++.
T Consensus 180 L~Ls~N~i~~l--~~l~~l~~L~~L~L~~N-~l~~ 211 (605)
T 1m9s_A 180 LYLSKNHISDL--RALAGLKNLDVLELFSQ-ECLN 211 (605)
T ss_dssp EECCSSCCCBC--GGGTTCTTCSEEECCSE-EEEC
T ss_pred EECcCCCCCCC--hHHccCCCCCEEEccCC-cCcC
Confidence 77777777664 34667777777777777 5543
|
| >1h6t_A Internalin B; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.6A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 2wqu_A 2uzy_A 2uzx_A 2wqv_A* 2wqw_A 2wqx_A 1d0b_A 1otn_A 1oto_A 1otm_A | Back alignment and structure |
|---|
Probab=99.30 E-value=5.2e-12 Score=111.00 Aligned_cols=179 Identities=16% Similarity=0.172 Sum_probs=126.3
Q ss_pred cccccCCCCCeeeecCCCCCChHHHHHHHhcCCCCCEEEccCCcccChhhHHHHHhcCCccceEeecCCCCCchhHHHHh
Q 012207 220 PPVVKLQYLEDLVLEGCHGIDDDGLASVEYSCKSLKALNLSKCQNISHVGLSSLIKGADYLQQLILAYSFWVSADLSKCL 299 (468)
Q Consensus 220 ~~l~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~l 299 (468)
.....+++|+.|+++++. +... ..+.. +++|+.|+++++....... +..+++|+.|+++++. +.. ...+
T Consensus 40 ~~~~~l~~L~~L~l~~~~-i~~~--~~~~~-l~~L~~L~L~~n~l~~~~~----l~~l~~L~~L~l~~n~-l~~--~~~l 108 (291)
T 1h6t_A 40 VTQNELNSIDQIIANNSD-IKSV--QGIQY-LPNVTKLFLNGNKLTDIKP----LANLKNLGWLFLDENK-VKD--LSSL 108 (291)
T ss_dssp ECHHHHHTCCEEECTTSC-CCCC--TTGGG-CTTCCEEECCSSCCCCCGG----GTTCTTCCEEECCSSC-CCC--GGGG
T ss_pred cchhhcCcccEEEccCCC-cccC--hhHhc-CCCCCEEEccCCccCCCcc----cccCCCCCEEECCCCc-CCC--Chhh
Confidence 344568899999998853 4332 22444 8999999999886433222 6678899999999874 332 2347
Q ss_pred hcCCCCCeeEecCCcCChhHHHHHHHhCCCCCeEecccCCCCCHHHHHHHHHhCCCCCeEecCCCCCCCHHHHHHHHhcC
Q 012207 300 HNFPMLQSIKFEDCPVARSGIKAIGNWHGSLKELSLSKCSGVTDEELSFVVQSHKELRKLDITCCRKITYASINSITKTC 379 (468)
Q Consensus 300 ~~~~~L~~L~l~~~~~~~~~~~~l~~~~~~L~~L~l~~~~~~~~~~l~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~ 379 (468)
..+++|++|++++|.+.+. ..+. .+++|+.|+++++ .+++. ..+..+++|+.|++++|. +++... ...+
T Consensus 109 ~~l~~L~~L~L~~n~i~~~--~~l~-~l~~L~~L~l~~n-~l~~~---~~l~~l~~L~~L~L~~N~-l~~~~~---l~~l 177 (291)
T 1h6t_A 109 KDLKKLKSLSLEHNGISDI--NGLV-HLPQLESLYLGNN-KITDI---TVLSRLTKLDTLSLEDNQ-ISDIVP---LAGL 177 (291)
T ss_dssp TTCTTCCEEECTTSCCCCC--GGGG-GCTTCCEEECCSS-CCCCC---GGGGGCTTCSEEECCSSC-CCCCGG---GTTC
T ss_pred ccCCCCCEEECCCCcCCCC--hhhc-CCCCCCEEEccCC-cCCcc---hhhccCCCCCEEEccCCc-cccchh---hcCC
Confidence 8889999999999987764 2233 6789999999985 45432 345678999999999886 443322 4578
Q ss_pred CcCCeEEccCCCCCCHHHHHHHHhcCCCCCEEEccCCCCChhhHH
Q 012207 380 TSLTSLRMECCKLVSWEAFVLIGQQCQYLEELDITENEVNDEGLK 424 (468)
Q Consensus 380 ~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~ 424 (468)
++|+.|++++|. +++. ..+. .+++|+.|++++|.+++.+..
T Consensus 178 ~~L~~L~L~~N~-i~~l--~~l~-~l~~L~~L~l~~n~i~~~~~~ 218 (291)
T 1h6t_A 178 TKLQNLYLSKNH-ISDL--RALA-GLKNLDVLELFSQECLNKPIN 218 (291)
T ss_dssp TTCCEEECCSSC-CCBC--GGGT-TCTTCSEEEEEEEEEECCCEE
T ss_pred CccCEEECCCCc-CCCC--hhhc-cCCCCCEEECcCCcccCCccc
Confidence 999999999864 5542 2333 789999999999887765433
|
| >2xwt_C Thyrotropin receptor; signaling protein-immune system complex, GPCR, graves' disea autoimmunity, receptor-autoantibody complex; HET: NAG BMA MAN; 1.90A {Homo sapiens} PDB: 3g04_C* | Back alignment and structure |
|---|
Probab=99.30 E-value=2.7e-14 Score=122.05 Aligned_cols=201 Identities=12% Similarity=0.033 Sum_probs=102.3
Q ss_pred CCCCeeeecCCCCCChHHHHHHHhcCCCCCEEEccCCcccChhhHHHHHhcCCccceEeecCCCCCchhHHHHhhcCCCC
Q 012207 226 QYLEDLVLEGCHGIDDDGLASVEYSCKSLKALNLSKCQNISHVGLSSLIKGADYLQQLILAYSFWVSADLSKCLHNFPML 305 (468)
Q Consensus 226 ~~L~~L~l~~~~~~~~~~~~~l~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~L 305 (468)
++|++|+++++ .+.......+.. +++|++|+++++..+.... ...+..+++|++|+++++..+.......+..+++|
T Consensus 31 ~~l~~L~l~~n-~l~~i~~~~~~~-l~~L~~L~l~~n~~l~~i~-~~~f~~l~~L~~L~l~~~n~l~~i~~~~f~~l~~L 107 (239)
T 2xwt_C 31 PSTQTLKLIET-HLRTIPSHAFSN-LPNISRIYVSIDVTLQQLE-SHSFYNLSKVTHIEIRNTRNLTYIDPDALKELPLL 107 (239)
T ss_dssp TTCCEEEEESC-CCSEECTTTTTT-CTTCCEEEEECCSSCCEEC-TTTEESCTTCCEEEEEEETTCCEECTTSEECCTTC
T ss_pred CcccEEEEeCC-cceEECHHHccC-CCCCcEEeCCCCCCcceeC-HhHcCCCcCCcEEECCCCCCeeEcCHHHhCCCCCC
Confidence 36777777763 344332222333 5666666666553121110 00123344555555544212322222233344444
Q ss_pred CeeEecCCcCChhHHHHHHHhCCCCCeEecccCCCCCHHHHHHHHHhCCCCC---eEecCCCCCCCHHHHHHHHhcCCcC
Q 012207 306 QSIKFEDCPVARSGIKAIGNWHGSLKELSLSKCSGVTDEELSFVVQSHKELR---KLDITCCRKITYASINSITKTCTSL 382 (468)
Q Consensus 306 ~~L~l~~~~~~~~~~~~l~~~~~~L~~L~l~~~~~~~~~~l~~~~~~~~~L~---~L~l~~~~~~~~~~~~~~~~~~~~L 382 (468)
++|++++|.+.. ++. +..+++|+ .|++++|..++..... ....+++|
T Consensus 108 ~~L~l~~n~l~~----------------------------lp~-~~~l~~L~~L~~L~l~~N~~l~~i~~~-~~~~l~~L 157 (239)
T 2xwt_C 108 KFLGIFNTGLKM----------------------------FPD-LTKVYSTDIFFILEITDNPYMTSIPVN-AFQGLCNE 157 (239)
T ss_dssp CEEEEEEECCCS----------------------------CCC-CTTCCBCCSEEEEEEESCTTCCEECTT-TTTTTBSS
T ss_pred CEEeCCCCCCcc----------------------------ccc-cccccccccccEEECCCCcchhhcCcc-cccchhcc
Confidence 444444443332 111 23344555 6666665223321111 12356777
Q ss_pred C-eEEccCCCCCCHHHHHHHHhcCCCCCEEEccCC-CCChhhHHhcccC-CCCCEEeeCCCCccCHHHHHHHHhcCcccC
Q 012207 383 T-SLRMECCKLVSWEAFVLIGQQCQYLEELDITEN-EVNDEGLKSISRC-SKLSSLKLGICSNITDEGLKHVGSTCSMLK 459 (468)
Q Consensus 383 ~-~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~-~~~~~~~~~l~~~-~~L~~L~l~~~~~l~~~~~~~~~~~~~~L~ 459 (468)
+ +|+++++. ++......+ ..++|+.|++++| .++......+..+ ++|+.|++++| .++. ++.. .+++|+
T Consensus 158 ~~~L~l~~n~-l~~i~~~~~--~~~~L~~L~L~~n~~l~~i~~~~~~~l~~~L~~L~l~~N-~l~~--l~~~--~~~~L~ 229 (239)
T 2xwt_C 158 TLTLKLYNNG-FTSVQGYAF--NGTKLDAVYLNKNKYLTVIDKDAFGGVYSGPSLLDVSQT-SVTA--LPSK--GLEHLK 229 (239)
T ss_dssp EEEEECCSCC-CCEECTTTT--TTCEEEEEECTTCTTCCEECTTTTTTCSBCCSEEECTTC-CCCC--CCCT--TCTTCS
T ss_pred eeEEEcCCCC-CcccCHhhc--CCCCCCEEEcCCCCCcccCCHHHhhccccCCcEEECCCC-cccc--CChh--HhccCc
Confidence 7 77777643 432111111 2267888888888 4777665667777 88888888888 6663 2221 577888
Q ss_pred eeecCCCC
Q 012207 460 ELDLYRFS 467 (468)
Q Consensus 460 ~L~l~~c~ 467 (468)
.|++.+|.
T Consensus 230 ~L~l~~~~ 237 (239)
T 2xwt_C 230 ELIARNTW 237 (239)
T ss_dssp EEECTTC-
T ss_pred eeeccCcc
Confidence 88888774
|
| >2o6q_A Variable lymphocyte receptor A; leucine-rich repeat protein, LRR, immune system; 2.50A {Eptatretus burgeri} | Back alignment and structure |
|---|
Probab=99.29 E-value=6.4e-13 Score=115.73 Aligned_cols=61 Identities=18% Similarity=0.044 Sum_probs=29.1
Q ss_pred hCCCccEeeecccCCCCCCccccccCCCCCeeeecCCCCCChHHHHHHHhcCCCCCEEEccCC
Q 012207 200 KCQEIRTLDLSYLPITEKCLPPVVKLQYLEDLVLEGCHGIDDDGLASVEYSCKSLKALNLSKC 262 (468)
Q Consensus 200 ~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~~L~~L~l~~~ 262 (468)
.+++|++|+++++.+.......+..+++|++|+++++ .+.......+.. +++|+.|+++++
T Consensus 107 ~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n-~l~~~~~~~~~~-l~~L~~L~L~~n 167 (270)
T 2o6q_A 107 QLVNLAELRLDRNQLKSLPPRVFDSLTKLTYLSLGYN-ELQSLPKGVFDK-LTSLKELRLYNN 167 (270)
T ss_dssp TCSSCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSS-CCCCCCTTTTTT-CTTCCEEECCSS
T ss_pred cccCCCEEECCCCccCeeCHHHhCcCcCCCEEECCCC-cCCccCHhHccC-CcccceeEecCC
Confidence 4555666666655554444444455556666666553 232222111222 455555555544
|
| >3m19_A Variable lymphocyte receptor A diversity region; adaptive immunity, antibody, T cell, leucine-rich repeat, immune system; 1.70A {Petromyzon marinus} PDB: 3m18_A | Back alignment and structure |
|---|
Probab=99.24 E-value=4.2e-13 Score=115.53 Aligned_cols=158 Identities=13% Similarity=0.090 Sum_probs=111.7
Q ss_pred CccceEeecCCCCCchhHHHHhhcCCCCCeeEecCCcCChhHHHHHHHhCCCCCeEecccCCCCCHHHHHHHHHhCCCCC
Q 012207 278 DYLQQLILAYSFWVSADLSKCLHNFPMLQSIKFEDCPVARSGIKAIGNWHGSLKELSLSKCSGVTDEELSFVVQSHKELR 357 (468)
Q Consensus 278 ~~L~~L~l~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~l~~~~~~L~~L~l~~~~~~~~~~l~~~~~~~~~L~ 357 (468)
++++.|+++++ .+.......+..+++|++|++++|.+.......+. .+++|++|+++++ .++.. ....+..+++|+
T Consensus 35 ~~l~~L~L~~n-~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~-~l~~L~~L~L~~n-~l~~~-~~~~~~~l~~L~ 110 (251)
T 3m19_A 35 ADTEKLDLQST-GLATLSDATFRGLTKLTWLNLDYNQLQTLSAGVFD-DLTELGTLGLANN-QLASL-PLGVFDHLTQLD 110 (251)
T ss_dssp TTCCEEECTTS-CCCCCCTTTTTTCTTCCEEECTTSCCCCCCTTTTT-TCTTCCEEECTTS-CCCCC-CTTTTTTCTTCC
T ss_pred CCCCEEEccCC-CcCccCHhHhcCcccCCEEECCCCcCCccCHhHhc-cCCcCCEEECCCC-ccccc-ChhHhcccCCCC
Confidence 57999999987 44445555678899999999999987764443333 6789999999984 44421 122345678999
Q ss_pred eEecCCCCCCCHHHHHHHHhcCCcCCeEEccCCCCCCHHHHHHHHhcCCCCCEEEccCCCCChhhHHhcccCCCCCEEee
Q 012207 358 KLDITCCRKITYASINSITKTCTSLTSLRMECCKLVSWEAFVLIGQQCQYLEELDITENEVNDEGLKSISRCSKLSSLKL 437 (468)
Q Consensus 358 ~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l 437 (468)
+|++++|. ++.... .....+++|++|+++++. ++......+. .+++|+.|++++|.++......+..+++|+.|++
T Consensus 111 ~L~L~~N~-l~~~~~-~~~~~l~~L~~L~Ls~N~-l~~~~~~~~~-~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l 186 (251)
T 3m19_A 111 KLYLGGNQ-LKSLPS-GVFDRLTKLKELRLNTNQ-LQSIPAGAFD-KLTNLQTLSLSTNQLQSVPHGAFDRLGKLQTITL 186 (251)
T ss_dssp EEECCSSC-CCCCCT-TTTTTCTTCCEEECCSSC-CCCCCTTTTT-TCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEEC
T ss_pred EEEcCCCc-CCCcCh-hHhccCCcccEEECcCCc-CCccCHHHcC-cCcCCCEEECCCCcCCccCHHHHhCCCCCCEEEe
Confidence 99999875 442211 122467899999998853 5432222233 6789999999999888776666778899999999
Q ss_pred CCCCccC
Q 012207 438 GICSNIT 444 (468)
Q Consensus 438 ~~~~~l~ 444 (468)
++| .++
T Consensus 187 ~~N-~~~ 192 (251)
T 3m19_A 187 FGN-QFD 192 (251)
T ss_dssp CSC-CBC
T ss_pred eCC-cee
Confidence 998 554
|
| >3m19_A Variable lymphocyte receptor A diversity region; adaptive immunity, antibody, T cell, leucine-rich repeat, immune system; 1.70A {Petromyzon marinus} PDB: 3m18_A | Back alignment and structure |
|---|
Probab=99.23 E-value=1.1e-12 Score=112.99 Aligned_cols=161 Identities=13% Similarity=0.136 Sum_probs=108.9
Q ss_pred CCCCCEEEccCCcccChhhHHHHHhcCCccceEeecCCCCCchhHHHHhhcCCCCCeeEecCCcCChhHHHHHHHhCCCC
Q 012207 251 CKSLKALNLSKCQNISHVGLSSLIKGADYLQQLILAYSFWVSADLSKCLHNFPMLQSIKFEDCPVARSGIKAIGNWHGSL 330 (468)
Q Consensus 251 ~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~l~~~~~~L 330 (468)
.++++.|+++++...... ...+..+++|++|+++++ .+.......+..+++|++|++++|.+.......+. .+++|
T Consensus 34 ~~~l~~L~L~~n~l~~~~--~~~~~~l~~L~~L~L~~n-~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~-~l~~L 109 (251)
T 3m19_A 34 PADTEKLDLQSTGLATLS--DATFRGLTKLTWLNLDYN-QLQTLSAGVFDDLTELGTLGLANNQLASLPLGVFD-HLTQL 109 (251)
T ss_dssp CTTCCEEECTTSCCCCCC--TTTTTTCTTCCEEECTTS-CCCCCCTTTTTTCTTCCEEECTTSCCCCCCTTTTT-TCTTC
T ss_pred CCCCCEEEccCCCcCccC--HhHhcCcccCCEEECCCC-cCCccCHhHhccCCcCCEEECCCCcccccChhHhc-ccCCC
Confidence 357999999987632211 122456789999999987 45555555678889999999999987754433333 67899
Q ss_pred CeEecccCCCCCHHHHHHHHHhCCCCCeEecCCCCCCCHHHHHHHHhcCCcCCeEEccCCCCCCHHHHHHHHhcCCCCCE
Q 012207 331 KELSLSKCSGVTDEELSFVVQSHKELRKLDITCCRKITYASINSITKTCTSLTSLRMECCKLVSWEAFVLIGQQCQYLEE 410 (468)
Q Consensus 331 ~~L~l~~~~~~~~~~l~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~ 410 (468)
++|+++++ .++.. ....+..+++|+.|++++|. ++.... .....+++|++|+++++. ++......+ ..+++|+.
T Consensus 110 ~~L~L~~N-~l~~~-~~~~~~~l~~L~~L~Ls~N~-l~~~~~-~~~~~l~~L~~L~L~~N~-l~~~~~~~~-~~l~~L~~ 183 (251)
T 3m19_A 110 DKLYLGGN-QLKSL-PSGVFDRLTKLKELRLNTNQ-LQSIPA-GAFDKLTNLQTLSLSTNQ-LQSVPHGAF-DRLGKLQT 183 (251)
T ss_dssp CEEECCSS-CCCCC-CTTTTTTCTTCCEEECCSSC-CCCCCT-TTTTTCTTCCEEECCSSC-CSCCCTTTT-TTCTTCCE
T ss_pred CEEEcCCC-cCCCc-ChhHhccCCcccEEECcCCc-CCccCH-HHcCcCcCCCEEECCCCc-CCccCHHHH-hCCCCCCE
Confidence 99999984 44421 12224567899999999875 442221 123467899999999854 443222223 37889999
Q ss_pred EEccCCCCChh
Q 012207 411 LDITENEVNDE 421 (468)
Q Consensus 411 L~l~~~~~~~~ 421 (468)
|++++|.++..
T Consensus 184 L~l~~N~~~c~ 194 (251)
T 3m19_A 184 ITLFGNQFDCS 194 (251)
T ss_dssp EECCSCCBCTT
T ss_pred EEeeCCceeCC
Confidence 99999887654
|
| >1m9s_A Internalin B; cell invasion, GW domains, SH3 domains, signaling protein; 2.65A {Listeria monocytogenes} SCOP: b.1.18.15 b.34.11.1 b.34.11.1 b.34.11.1 c.10.2.1 PDB: 2y5q_A | Back alignment and structure |
|---|
Probab=99.22 E-value=1.6e-11 Score=118.43 Aligned_cols=181 Identities=15% Similarity=0.156 Sum_probs=132.0
Q ss_pred cccccCCCCCeeeecCCCCCChHHHHHHHhcCCCCCEEEccCCcccChhhHHHHHhcCCccceEeecCCCCCchhHHHHh
Q 012207 220 PPVVKLQYLEDLVLEGCHGIDDDGLASVEYSCKSLKALNLSKCQNISHVGLSSLIKGADYLQQLILAYSFWVSADLSKCL 299 (468)
Q Consensus 220 ~~l~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~l 299 (468)
..+..+++|+.|+++++. +.... .+.. +++|+.|+++++....... +..+++|+.|+++++.. .. +..+
T Consensus 37 ~~~~~L~~L~~L~l~~n~-i~~l~--~l~~-l~~L~~L~Ls~N~l~~~~~----l~~l~~L~~L~Ls~N~l-~~--l~~l 105 (605)
T 1m9s_A 37 VTQNELNSIDQIIANNSD-IKSVQ--GIQY-LPNVTKLFLNGNKLTDIKP----LTNLKNLGWLFLDENKI-KD--LSSL 105 (605)
T ss_dssp ECHHHHTTCCCCBCTTCC-CCCCT--TGGG-CTTCCEEECTTSCCCCCGG----GGGCTTCCEEECCSSCC-CC--CTTS
T ss_pred cchhcCCCCCEEECcCCC-CCCCh--HHcc-CCCCCEEEeeCCCCCCChh----hccCCCCCEEECcCCCC-CC--Chhh
Confidence 345578999999999854 44322 3444 9999999999986433222 67889999999999843 32 2367
Q ss_pred hcCCCCCeeEecCCcCChhHHHHHHHhCCCCCeEecccCCCCCHHHHHHHHHhCCCCCeEecCCCCCCCHHHHHHHHhcC
Q 012207 300 HNFPMLQSIKFEDCPVARSGIKAIGNWHGSLKELSLSKCSGVTDEELSFVVQSHKELRKLDITCCRKITYASINSITKTC 379 (468)
Q Consensus 300 ~~~~~L~~L~l~~~~~~~~~~~~l~~~~~~L~~L~l~~~~~~~~~~l~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~ 379 (468)
..+++|+.|++++|.+.+. ..+. .+++|+.|+|++| .++.. ..+..+++|+.|++++|. +..... ...+
T Consensus 106 ~~l~~L~~L~Ls~N~l~~l--~~l~-~l~~L~~L~Ls~N-~l~~l---~~l~~l~~L~~L~Ls~N~-l~~~~~---l~~l 174 (605)
T 1m9s_A 106 KDLKKLKSLSLEHNGISDI--NGLV-HLPQLESLYLGNN-KITDI---TVLSRLTKLDTLSLEDNQ-ISDIVP---LAGL 174 (605)
T ss_dssp TTCTTCCEEECTTSCCCCC--GGGG-GCTTCSEEECCSS-CCCCC---GGGGSCTTCSEEECCSSC-CCCCGG---GTTC
T ss_pred ccCCCCCEEEecCCCCCCC--cccc-CCCccCEEECCCC-ccCCc---hhhcccCCCCEEECcCCc-CCCchh---hccC
Confidence 8899999999999998763 2233 7899999999985 45542 346678999999999986 443222 4579
Q ss_pred CcCCeEEccCCCCCCHHHHHHHHhcCCCCCEEEccCCCCChhhHHhc
Q 012207 380 TSLTSLRMECCKLVSWEAFVLIGQQCQYLEELDITENEVNDEGLKSI 426 (468)
Q Consensus 380 ~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l 426 (468)
++|+.|++++|. +++. ..+. .+++|+.|++++|.+...+...+
T Consensus 175 ~~L~~L~Ls~N~-i~~l--~~l~-~l~~L~~L~L~~N~l~~~p~~~~ 217 (605)
T 1m9s_A 175 TKLQNLYLSKNH-ISDL--RALA-GLKNLDVLELFSQECLNKPINHQ 217 (605)
T ss_dssp TTCCEEECCSSC-CCBC--GGGT-TCTTCSEEECCSEEEECCCCCCC
T ss_pred CCCCEEECcCCC-CCCC--hHHc-cCCCCCEEEccCCcCcCCccccc
Confidence 999999999965 5542 3343 78999999999998877554433
|
| >1p9a_G Platelet glycoprotein IB alpha chain precursor; platelet receptors, glycocalicin, leucine rich repeats, BLOO clotting; HET: NAG BMA; 1.70A {Homo sapiens} SCOP: c.10.2.7 PDB: 1ook_G* 1qyy_A* 3pmh_G* 1m0z_A 1m10_B 1sq0_B 1gwb_A* 1p8v_A* 1u0n_D 3p72_A | Back alignment and structure |
|---|
Probab=99.22 E-value=5.1e-13 Score=117.31 Aligned_cols=198 Identities=15% Similarity=0.096 Sum_probs=145.2
Q ss_pred CCCCCEEEccCCcccChhhHHHHHhcCCccceEeecCCCCCchhHHHHhhcCCCCCeeEecCCcCChhHHHHHHHhCCCC
Q 012207 251 CKSLKALNLSKCQNISHVGLSSLIKGADYLQQLILAYSFWVSADLSKCLHNFPMLQSIKFEDCPVARSGIKAIGNWHGSL 330 (468)
Q Consensus 251 ~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~l~~~~~~L 330 (468)
+++++++++.++.. .... ....++++.|+++++ .+....+..+..+++|++|+++++.++..... ..+++|
T Consensus 9 l~~l~~l~~~~~~l-~~ip----~~~~~~l~~L~L~~N-~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~---~~l~~L 79 (290)
T 1p9a_G 9 VASHLEVNCDKRNL-TALP----PDLPKDTTILHLSEN-LLYTFSLATLMPYTRLTQLNLDRAELTKLQVD---GTLPVL 79 (290)
T ss_dssp STTCCEEECTTSCC-SSCC----SCCCTTCCEEECTTS-CCSEEEGGGGTTCTTCCEEECTTSCCCEEECC---SCCTTC
T ss_pred cCCccEEECCCCCC-CcCC----CCCCCCCCEEEcCCC-cCCccCHHHhhcCCCCCEEECCCCccCcccCC---CCCCcC
Confidence 68899999987652 2211 112368999999998 45555566788999999999999987754332 368999
Q ss_pred CeEecccCCCCCHHHHHHHHHhCCCCCeEecCCCCCCCHHHHHHHHhcCCcCCeEEccCCCCCCHHHHHHHHhcCCCCCE
Q 012207 331 KELSLSKCSGVTDEELSFVVQSHKELRKLDITCCRKITYASINSITKTCTSLTSLRMECCKLVSWEAFVLIGQQCQYLEE 410 (468)
Q Consensus 331 ~~L~l~~~~~~~~~~l~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~ 410 (468)
++|+++++ .++. ++..+..+++|+.|++++|. ++.... ..+..+++|++|+++++. ++......+ ..+++|+.
T Consensus 80 ~~L~Ls~N-~l~~--l~~~~~~l~~L~~L~l~~N~-l~~l~~-~~~~~l~~L~~L~L~~N~-l~~~~~~~~-~~l~~L~~ 152 (290)
T 1p9a_G 80 GTLDLSHN-QLQS--LPLLGQTLPALTVLDVSFNR-LTSLPL-GALRGLGELQELYLKGNE-LKTLPPGLL-TPTPKLEK 152 (290)
T ss_dssp CEEECCSS-CCSS--CCCCTTTCTTCCEEECCSSC-CCCCCS-STTTTCTTCCEEECTTSC-CCCCCTTTT-TTCTTCCE
T ss_pred CEEECCCC-cCCc--CchhhccCCCCCEEECCCCc-CcccCH-HHHcCCCCCCEEECCCCC-CCccChhhc-ccccCCCE
Confidence 99999985 4542 33445678999999999886 432211 223468999999999854 543222222 37899999
Q ss_pred EEccCCCCChhhHHhcccCCCCCEEeeCCCCccCHHHHHHHHhcCcccCeeecCCCC
Q 012207 411 LDITENEVNDEGLKSISRCSKLSSLKLGICSNITDEGLKHVGSTCSMLKELDLYRFS 467 (468)
Q Consensus 411 L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~~L~~L~l~~c~ 467 (468)
|++++|.++......+..+++|+.|++++| .++. ++......++|+.|++.+|+
T Consensus 153 L~L~~N~l~~l~~~~~~~l~~L~~L~L~~N-~l~~--ip~~~~~~~~L~~l~L~~Np 206 (290)
T 1p9a_G 153 LSLANNNLTELPAGLLNGLENLDTLLLQEN-SLYT--IPKGFFGSHLLPFAFLHGNP 206 (290)
T ss_dssp EECTTSCCSCCCTTTTTTCTTCCEEECCSS-CCCC--CCTTTTTTCCCSEEECCSCC
T ss_pred EECCCCcCCccCHHHhcCcCCCCEEECCCC-cCCc--cChhhcccccCCeEEeCCCC
Confidence 999999998876666778999999999999 8873 44434467899999999987
|
| >2ra8_A Uncharacterized protein Q64V53_bacfr; WGR domain, LRR domain, leucine rich repeats, BFR43, structural genomics, PSI-2; 1.95A {Bacteroides fragilis} | Back alignment and structure |
|---|
Probab=99.21 E-value=3.4e-11 Score=108.19 Aligned_cols=182 Identities=15% Similarity=0.130 Sum_probs=114.0
Q ss_pred CCCCCEEEccCCcc-------cChhhHHHHHhcCCccceEeecCCCCCchhHHHHhhcCCCCCeeEecCCcCChhHHHHH
Q 012207 251 CKSLKALNLSKCQN-------ISHVGLSSLIKGADYLQQLILAYSFWVSADLSKCLHNFPMLQSIKFEDCPVARSGIKAI 323 (468)
Q Consensus 251 ~~~L~~L~l~~~~~-------~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~l 323 (468)
+++|+.|.+.+... .....+..++..+|+|++|.+.++.... .. .+ .+++|++|.+..+.+++..+..+
T Consensus 138 l~~L~~L~l~~~~~e~~~is~~~~~~L~~ll~~~P~L~~L~L~g~~~l~--l~-~~-~~~~L~~L~L~~~~l~~~~l~~l 213 (362)
T 2ra8_A 138 FAHFEGLFWGDIDFEEQEISWIEQVDLSPVLDAMPLLNNLKIKGTNNLS--IG-KK-PRPNLKSLEIISGGLPDSVVEDI 213 (362)
T ss_dssp HTTCSEEEECCCCTTTCCGGGCBCCBCHHHHHTCTTCCEEEEECCBTCB--CC-SC-BCTTCSEEEEECSBCCHHHHHHH
T ss_pred cchhhheeecCcchhhcccccccccCHHHHHhcCCCCcEEEEeCCCCce--ec-cc-cCCCCcEEEEecCCCChHHHHHH
Confidence 78999999865421 1112355677788899999997763221 11 12 36788888888888888877777
Q ss_pred HH-hCCCCCeEecccCCC--CCH---HHHHHHH--HhCCCCCeEecCCCCCCCHHHHHHHHh--cCCcCCeEEccCCCCC
Q 012207 324 GN-WHGSLKELSLSKCSG--VTD---EELSFVV--QSHKELRKLDITCCRKITYASINSITK--TCTSLTSLRMECCKLV 393 (468)
Q Consensus 324 ~~-~~~~L~~L~l~~~~~--~~~---~~l~~~~--~~~~~L~~L~l~~~~~~~~~~~~~~~~--~~~~L~~L~l~~~~~~ 393 (468)
.. .+|+|++|+|+.+.. ..+ ..+...+ ..+|+|+.|.+.+|. +.+.....++. .+++|++|+++. +.+
T Consensus 214 ~~~~lp~L~~L~L~~~~~~~~~~~~~~~l~~~l~~~~~p~Lr~L~L~~~~-i~~~~~~~la~a~~~~~L~~LdLs~-n~L 291 (362)
T 2ra8_A 214 LGSDLPNLEKLVLYVGVEDYGFDGDMNVFRPLFSKDRFPNLKWLGIVDAE-EQNVVVEMFLESDILPQLETMDISA-GVL 291 (362)
T ss_dssp HHSBCTTCCEEEEECBCGGGTCCSCGGGTGGGSCTTTCTTCCEEEEESCT-THHHHHHHHHHCSSGGGCSEEECCS-SCC
T ss_pred HHccCCCCcEEEEeccccccccchhHHHHHHHHhcCCCCCcCEEeCCCCC-CchHHHHHHHhCccCCCCCEEECCC-CCC
Confidence 64 578888888753110 011 1111112 246788888887765 55444444432 467788888865 457
Q ss_pred CHHHHHHHH---hcCCCCCEEEccCCCCChhhHHhccc-CCCCCEEeeCCC
Q 012207 394 SWEAFVLIG---QQCQYLEELDITENEVNDEGLKSISR-CSKLSSLKLGIC 440 (468)
Q Consensus 394 ~~~~~~~~~---~~~~~L~~L~l~~~~~~~~~~~~l~~-~~~L~~L~l~~~ 440 (468)
++.+...+. ..+++|+.|++++|.+++.+...+.. + ...++++++
T Consensus 292 ~d~G~~~L~~~L~~l~~L~~L~L~~n~i~d~~~~~l~~al--g~~~~~~~~ 340 (362)
T 2ra8_A 292 TDEGARLLLDHVDKIKHLKFINMKYNYLSDEMKKELQKSL--PMKIDVSDS 340 (362)
T ss_dssp BHHHHHHHHTTHHHHTTCSEEECCSBBCCHHHHHHHHHHC--CSEEECCSB
T ss_pred ChHHHHHHHhhcccCCcceEEECCCCcCCHHHHHHHHHHc--CCEEEecCC
Confidence 776665554 24677788888777777777776664 3 345677666
|
| >2ra8_A Uncharacterized protein Q64V53_bacfr; WGR domain, LRR domain, leucine rich repeats, BFR43, structural genomics, PSI-2; 1.95A {Bacteroides fragilis} | Back alignment and structure |
|---|
Probab=99.20 E-value=9e-11 Score=105.45 Aligned_cols=160 Identities=14% Similarity=0.129 Sum_probs=81.5
Q ss_pred HHhcCCCCCEEEccCCcccChhhHHHHHhcCCccceEeecCCCCCchhHHHHhh--cCCCCCeeEecCC--c-CChh---
Q 012207 247 VEYSCKSLKALNLSKCQNISHVGLSSLIKGADYLQQLILAYSFWVSADLSKCLH--NFPMLQSIKFEDC--P-VARS--- 318 (468)
Q Consensus 247 l~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~l~--~~~~L~~L~l~~~--~-~~~~--- 318 (468)
+...+|+|+.|.+.++...... . ...++|++|++..+ .+.......+. .+|+|++|+|..+ . ..+.
T Consensus 167 ll~~~P~L~~L~L~g~~~l~l~---~--~~~~~L~~L~L~~~-~l~~~~l~~l~~~~lp~L~~L~L~~~~~~~~~~~~~~ 240 (362)
T 2ra8_A 167 VLDAMPLLNNLKIKGTNNLSIG---K--KPRPNLKSLEIISG-GLPDSVVEDILGSDLPNLEKLVLYVGVEDYGFDGDMN 240 (362)
T ss_dssp HHHTCTTCCEEEEECCBTCBCC---S--CBCTTCSEEEEECS-BCCHHHHHHHHHSBCTTCCEEEEECBCGGGTCCSCGG
T ss_pred HHhcCCCCcEEEEeCCCCceec---c--ccCCCCcEEEEecC-CCChHHHHHHHHccCCCCcEEEEeccccccccchhHH
Confidence 3333667777777654211111 1 12566777777655 34444444444 5667777766421 1 1111
Q ss_pred HHHHHH--HhCCCCCeEecccCCCCCHHHHHHHHH--hCCCCCeEecCCCCCCCHHHHHHHHh---cCCcCCeEEccCCC
Q 012207 319 GIKAIG--NWHGSLKELSLSKCSGVTDEELSFVVQ--SHKELRKLDITCCRKITYASINSITK---TCTSLTSLRMECCK 391 (468)
Q Consensus 319 ~~~~l~--~~~~~L~~L~l~~~~~~~~~~l~~~~~--~~~~L~~L~l~~~~~~~~~~~~~~~~---~~~~L~~L~l~~~~ 391 (468)
.+..+. ..+|+|+.|++.+| .+.+.+...+.. .+|+|++|++++|. +++.+...+.. .+++|+.|+++.|
T Consensus 241 ~l~~~l~~~~~p~Lr~L~L~~~-~i~~~~~~~la~a~~~~~L~~LdLs~n~-L~d~G~~~L~~~L~~l~~L~~L~L~~n- 317 (362)
T 2ra8_A 241 VFRPLFSKDRFPNLKWLGIVDA-EEQNVVVEMFLESDILPQLETMDISAGV-LTDEGARLLLDHVDKIKHLKFINMKYN- 317 (362)
T ss_dssp GTGGGSCTTTCTTCCEEEEESC-TTHHHHHHHHHHCSSGGGCSEEECCSSC-CBHHHHHHHHTTHHHHTTCSEEECCSB-
T ss_pred HHHHHHhcCCCCCcCEEeCCCC-CCchHHHHHHHhCccCCCCCEEECCCCC-CChHHHHHHHhhcccCCcceEEECCCC-
Confidence 111111 13567777777664 344433333332 34667777776554 66655544442 3566777777664
Q ss_pred CCCHHHHHHHHhcCCCCCEEEccCCC
Q 012207 392 LVSWEAFVLIGQQCQYLEELDITENE 417 (468)
Q Consensus 392 ~~~~~~~~~~~~~~~~L~~L~l~~~~ 417 (468)
.+++.+...+...+ ...++++.+.
T Consensus 318 ~i~d~~~~~l~~al--g~~~~~~~~~ 341 (362)
T 2ra8_A 318 YLSDEMKKELQKSL--PMKIDVSDSQ 341 (362)
T ss_dssp BCCHHHHHHHHHHC--CSEEECCSBC
T ss_pred cCCHHHHHHHHHHc--CCEEEecCCc
Confidence 36666666665333 3456666554
|
| >3sb4_A Hypothetical leucine rich repeat protein; LRR, right-handed beta-alpha superhelix, leucine-rich repeat structural genomics; HET: MSE PG4; 1.99A {Bacteroides thetaiotaomicron} | Back alignment and structure |
|---|
Probab=99.20 E-value=1.9e-12 Score=116.26 Aligned_cols=290 Identities=14% Similarity=0.049 Sum_probs=157.0
Q ss_pred CCCCCeEeccCCcccChHhHHHHHhcCCCCcEEeccCCCCCChHHHHHHHhhCCCccEeeecccCCCCCCcccccc----
Q 012207 149 AKNLERLWLARCKLITDLGIGRIAACCRKLKLLCLKWCIRVTDLGVELVALKCQEIRTLDLSYLPITEKCLPPVVK---- 224 (468)
Q Consensus 149 ~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~---- 224 (468)
++++++|.+.+ .+....+..+...+++|+.|+++++. +...... ....+.++.+.+..+.+.+ ..+..
T Consensus 24 ~~~l~~L~l~g--~i~~~~~~~l~~~l~~L~~LdLs~n~-i~~~~~~--~~~~~~~~~~~~~~~~I~~---~aF~~~~~~ 95 (329)
T 3sb4_A 24 ANSITHLTLTG--KLNAEDFRHLRDEFPSLKVLDISNAE-IKMYSGK--AGTYPNGKFYIYMANFVPA---YAFSNVVNG 95 (329)
T ss_dssp HHHCSEEEEEE--EECHHHHHHHHHSCTTCCEEEEEEEE-ECCEEES--SSSSGGGCCEEECTTEECT---TTTEEEETT
T ss_pred hCceeEEEEec--cccHHHHHHHHHhhccCeEEecCcce-eEEecCc--cccccccccccccccccCH---HHhcccccc
Confidence 34677777776 34555555555557778888887653 2200000 0011222333333332222 22334
Q ss_pred ----CCCCCeeeecCCCCCChHHHHHHHhcCCCCCEEEccCCcc--cChhhHHHHHhcCCccceEeecCCCC---CchhH
Q 012207 225 ----LQYLEDLVLEGCHGIDDDGLASVEYSCKSLKALNLSKCQN--ISHVGLSSLIKGADYLQQLILAYSFW---VSADL 295 (468)
Q Consensus 225 ----~~~L~~L~l~~~~~~~~~~~~~l~~~~~~L~~L~l~~~~~--~~~~~~~~~~~~~~~L~~L~l~~~~~---~~~~~ 295 (468)
+++|+++.+.. .+......++.. |++|+.+++.++.. +.+.. +..+.++..+....... .....
T Consensus 96 ~~~g~~~L~~l~L~~--~i~~I~~~aF~~-~~~L~~l~l~~n~i~~i~~~a----F~~~~~l~~l~~~~~~~~~~~~~i~ 168 (329)
T 3sb4_A 96 VTKGKQTLEKVILSE--KIKNIEDAAFKG-CDNLKICQIRKKTAPNLLPEA----LADSVTAIFIPLGSSDAYRFKNRWE 168 (329)
T ss_dssp EEEECTTCCC-CBCT--TCCEECTTTTTT-CTTCCEEEBCCSSCCEECTTS----SCTTTCEEEECTTCTHHHHTSTTTT
T ss_pred cccccCCCcEEECCc--cccchhHHHhhc-CcccceEEcCCCCccccchhh----hcCCCceEEecCcchhhhhcccccc
Confidence 77788877776 344333333444 78888888876541 22211 22344444444332100 00000
Q ss_pred HHHhhcCCCCC-eeEecCCcCChhHHHHHHHhCCCCCeEecccCCCCCHHHHHHHHHhCCCCCeEecCCCCCCCHHHHHH
Q 012207 296 SKCLHNFPMLQ-SIKFEDCPVARSGIKAIGNWHGSLKELSLSKCSGVTDEELSFVVQSHKELRKLDITCCRKITYASINS 374 (468)
Q Consensus 296 ~~~l~~~~~L~-~L~l~~~~~~~~~~~~l~~~~~~L~~L~l~~~~~~~~~~l~~~~~~~~~L~~L~l~~~~~~~~~~~~~ 374 (468)
...+..+..|+ .+.+.....-............++..+.+.+ .+....+..+...|++|+++++++|. ++..+-.
T Consensus 169 ~~~f~~~~~L~~~i~~~~~~~l~~~~~~~~~~~~~~~~l~~~~--~l~~~~~~~l~~~~~~L~~l~L~~n~-i~~I~~~- 244 (329)
T 3sb4_A 169 HFAFIEGEPLETTIQVGAMGKLEDEIMKAGLQPRDINFLTIEG--KLDNADFKLIRDYMPNLVSLDISKTN-ATTIPDF- 244 (329)
T ss_dssp TSCEEESCCCEEEEEECTTCCHHHHHHHTTCCGGGCSEEEEEE--CCCHHHHHHHHHHCTTCCEEECTTBC-CCEECTT-
T ss_pred ccccccccccceeEEecCCCcHHHHHhhcccCccccceEEEee--eecHHHHHHHHHhcCCCeEEECCCCC-cceecHh-
Confidence 01122344555 3444332211111111111245777787776 35666666666678999999998754 3322211
Q ss_pred HHhcCCcCCeEEccCCCCCCHHHHHHHHhcCCCCC-EEEccCCCCChhhHHhcccCCCCCEEeeCCCCccCHHHHHHHHh
Q 012207 375 ITKTCTSLTSLRMECCKLVSWEAFVLIGQQCQYLE-ELDITENEVNDEGLKSISRCSKLSSLKLGICSNITDEGLKHVGS 453 (468)
Q Consensus 375 ~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~-~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~l~~~~~~~~~~ 453 (468)
.+.+|++|+.+++... ++.-+-..+. .|++|+ .+++.+ .++..+...+..|++|+.|++.++ .++..+-.. +.
T Consensus 245 aF~~~~~L~~l~l~~n--i~~I~~~aF~-~~~~L~~~l~l~~-~l~~I~~~aF~~c~~L~~l~l~~n-~i~~I~~~a-F~ 318 (329)
T 3sb4_A 245 TFAQKKYLLKIKLPHN--LKTIGQRVFS-NCGRLAGTLELPA-SVTAIEFGAFMGCDNLRYVLATGD-KITTLGDEL-FG 318 (329)
T ss_dssp TTTTCTTCCEEECCTT--CCEECTTTTT-TCTTCCEEEEECT-TCCEECTTTTTTCTTEEEEEECSS-CCCEECTTT-TC
T ss_pred hhhCCCCCCEEECCcc--cceehHHHhh-CChhccEEEEEcc-cceEEchhhhhCCccCCEEEeCCC-ccCccchhh-hc
Confidence 2246889999999762 4433333333 889999 999987 677766677888999999999887 776533333 34
Q ss_pred cCcccCeeec
Q 012207 454 TCSMLKELDL 463 (468)
Q Consensus 454 ~~~~L~~L~l 463 (468)
+|++|+.++.
T Consensus 319 ~~~~L~~ly~ 328 (329)
T 3sb4_A 319 NGVPSKLIYK 328 (329)
T ss_dssp TTCCCCEEEC
T ss_pred CCcchhhhcc
Confidence 7899998864
|
| >1io0_A Tropomodulin; LRR protein, right-handed super-helix, protein binding; 1.45A {Gallus gallus} SCOP: c.10.1.1 | Back alignment and structure |
|---|
Probab=99.18 E-value=9.3e-10 Score=89.23 Aligned_cols=127 Identities=17% Similarity=0.186 Sum_probs=95.4
Q ss_pred hHHHHHHHhCCCCCeEecccCCCCCHHHHHHHHH---hCCCCCeEecCCCCCCCHHHHHHHHh---cCCcCCeEEccCCC
Q 012207 318 SGIKAIGNWHGSLKELSLSKCSGVTDEELSFVVQ---SHKELRKLDITCCRKITYASINSITK---TCTSLTSLRMECCK 391 (468)
Q Consensus 318 ~~~~~l~~~~~~L~~L~l~~~~~~~~~~l~~~~~---~~~~L~~L~l~~~~~~~~~~~~~~~~---~~~~L~~L~l~~~~ 391 (468)
+.+..+....++|++|++++|..+++.+...+.. ..++|++|++++|. +++.+...++. ..++|++|++++|
T Consensus 26 ~~l~~~l~~~~~L~~L~L~~n~~i~~~g~~~l~~~L~~~~~L~~L~Ls~n~-i~~~g~~~l~~~L~~n~~L~~L~L~~N- 103 (185)
T 1io0_A 26 ETLKRIQNNDPDLEEVNLNNIMNIPVPTLKACAEALKTNTYVKKFSIVGTR-SNDPVAFALAEMLKVNNTLKSLNVESN- 103 (185)
T ss_dssp HHHHHHHTTCTTCCEEECTTCTTCCHHHHHHHHHHHTTCCSCCEEECTTSC-CCHHHHHHHHHHHHHCSSCCEEECCSS-
T ss_pred HHHHHHHhcCCCCCEEEecCCCCCCHHHHHHHHHHHHhCCCcCEEECcCCC-CChHHHHHHHHHHHhCCCcCEEECcCC-
Confidence 3444455567899999999854788877665544 45789999999886 88877655543 4688999999885
Q ss_pred CCCHHHHHHHHh---cCCCCCEEEc--cCCCCChhhHHhcc----cCCCCCEEeeCCCCccCHHH
Q 012207 392 LVSWEAFVLIGQ---QCQYLEELDI--TENEVNDEGLKSIS----RCSKLSSLKLGICSNITDEG 447 (468)
Q Consensus 392 ~~~~~~~~~~~~---~~~~L~~L~l--~~~~~~~~~~~~l~----~~~~L~~L~l~~~~~l~~~~ 447 (468)
.+++.+...++. ..++|++|++ ++|.+++.+...+. ..++|++|++++| .+++.+
T Consensus 104 ~i~~~g~~~l~~~L~~n~~L~~L~L~~~~N~i~~~g~~~l~~~L~~n~~L~~L~L~~n-~i~~~~ 167 (185)
T 1io0_A 104 FISGSGILALVEALQSNTSLIELRIDNQSQPLGNNVEMEIANMLEKNTTLLKFGYHFT-QQGPRL 167 (185)
T ss_dssp CCCHHHHHHHHHGGGGCSSCCEEECCCCSSCCCHHHHHHHHHHHHHCSSCCEEECCCS-SHHHHH
T ss_pred cCCHHHHHHHHHHHHhCCCceEEEecCCCCCCCHHHHHHHHHHHHhCCCcCEEeccCC-CCChHH
Confidence 488888776654 4568999999 77899988766654 4688999999998 787665
|
| >2je0_A Acidic leucine-rich nuclear phosphoprotein 32 FAM member A; nuclear protein; 2.40A {Homo sapiens} PDB: 2je1_A | Back alignment and structure |
|---|
Probab=99.17 E-value=9e-12 Score=97.71 Aligned_cols=130 Identities=22% Similarity=0.309 Sum_probs=83.4
Q ss_pred CCCCeEecccCCCCCHHHHHHHHHhCCCCCeEecCCCCCCCHHHHHHHHhcCCcCCeEEccCCCCCCHHHHHHHHhcCCC
Q 012207 328 GSLKELSLSKCSGVTDEELSFVVQSHKELRKLDITCCRKITYASINSITKTCTSLTSLRMECCKLVSWEAFVLIGQQCQY 407 (468)
Q Consensus 328 ~~L~~L~l~~~~~~~~~~l~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~ 407 (468)
++|++|+++++ .+++..++..+..+++|+.|++++|. ++.. .....+++|++|++++|. ++.. +......+++
T Consensus 17 ~~l~~L~l~~n-~l~~~~~~~~~~~l~~L~~L~l~~n~-l~~~---~~~~~l~~L~~L~Ls~n~-i~~~-~~~~~~~l~~ 89 (149)
T 2je0_A 17 SDVKELVLDNS-RSNEGKLEGLTDEFEELEFLSTINVG-LTSI---ANLPKLNKLKKLELSDNR-VSGG-LEVLAEKCPN 89 (149)
T ss_dssp GGCSEEECTTC-BCBTTBCCSCCTTCTTCCEEECTTSC-CCCC---TTCCCCTTCCEEECCSSC-CCSC-THHHHHHCTT
T ss_pred ccCeEEEccCC-cCChhHHHHHHhhcCCCcEEECcCCC-CCCc---hhhhcCCCCCEEECCCCc-ccch-HHHHhhhCCC
Confidence 45555555553 23211122333456677777777664 3322 223467888888888754 4432 3334436889
Q ss_pred CCEEEccCCCCChhh-HHhcccCCCCCEEeeCCCCccCHHHH--HHHHhcCcccCeeecCC
Q 012207 408 LEELDITENEVNDEG-LKSISRCSKLSSLKLGICSNITDEGL--KHVGSTCSMLKELDLYR 465 (468)
Q Consensus 408 L~~L~l~~~~~~~~~-~~~l~~~~~L~~L~l~~~~~l~~~~~--~~~~~~~~~L~~L~l~~ 465 (468)
|++|++++|.+++.. +..+..+++|+.|++++| .++.... ......+|+|+.|++++
T Consensus 90 L~~L~ls~N~i~~~~~~~~~~~l~~L~~L~l~~N-~l~~~~~~~~~~~~~l~~L~~L~l~d 149 (149)
T 2je0_A 90 LTHLNLSGNKIKDLSTIEPLKKLENLKSLDLFNC-EVTNLNDYRENVFKLLPQLTYLDGYD 149 (149)
T ss_dssp CCEEECTTSCCCSHHHHGGGGGCTTCCEEECTTC-GGGGSTTHHHHHHHHCTTCCEETTBC
T ss_pred CCEEECCCCcCCChHHHHHHhhCCCCCEEeCcCC-cccchHHHHHHHHHHCCCcccccCCC
Confidence 999999999888753 366778999999999999 7775332 23556799999998864
|
| >1xeu_A Internalin C; cellular invasion, leucine-rich repeat, cell invasion; 2.05A {Listeria monocytogenes} | Back alignment and structure |
|---|
Probab=99.15 E-value=9.3e-12 Score=107.57 Aligned_cols=148 Identities=19% Similarity=0.201 Sum_probs=94.7
Q ss_pred hcCCccceEeecCCCCCchhHHHHhhcCCCCCeeEecCCcCChhHHHHHHHhCCCCCeEecccCCCCCHHHHHHHHHhCC
Q 012207 275 KGADYLQQLILAYSFWVSADLSKCLHNFPMLQSIKFEDCPVARSGIKAIGNWHGSLKELSLSKCSGVTDEELSFVVQSHK 354 (468)
Q Consensus 275 ~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~l~~~~~~L~~L~l~~~~~~~~~~l~~~~~~~~ 354 (468)
..+++|+.|+++++. +.. +. .+..+++|++|++++|.+.+... + ..+++|++|+++++ .+++ ++.+. . +
T Consensus 38 ~~l~~L~~L~l~~n~-i~~-l~-~l~~l~~L~~L~L~~N~i~~~~~--l-~~l~~L~~L~L~~N-~l~~--l~~~~-~-~ 106 (263)
T 1xeu_A 38 KELSGVQNFNGDNSN-IQS-LA-GMQFFTNLKELHLSHNQISDLSP--L-KDLTKLEELSVNRN-RLKN--LNGIP-S-A 106 (263)
T ss_dssp HHHTTCSEEECTTSC-CCC-CT-TGGGCTTCCEEECCSSCCCCCGG--G-TTCSSCCEEECCSS-CCSC--CTTCC-C-S
T ss_pred hhcCcCcEEECcCCC-ccc-ch-HHhhCCCCCEEECCCCccCCChh--h-ccCCCCCEEECCCC-ccCC--cCccc-c-C
Confidence 345788888888773 322 11 56778888888888887765443 3 36778888888874 3432 11111 1 6
Q ss_pred CCCeEecCCCCCCCHHHHHHHHhcCCcCCeEEccCCCCCCHHHHHHHHhcCCCCCEEEccCCCCChhhHHhcccCCCCCE
Q 012207 355 ELRKLDITCCRKITYASINSITKTCTSLTSLRMECCKLVSWEAFVLIGQQCQYLEELDITENEVNDEGLKSISRCSKLSS 434 (468)
Q Consensus 355 ~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~ 434 (468)
+|+.|++++|. ++.. . ....+++|+.|+++++. +++. ..+. .+++|+.|++++|.+++. ..+..+++|+.
T Consensus 107 ~L~~L~L~~N~-l~~~--~-~l~~l~~L~~L~Ls~N~-i~~~--~~l~-~l~~L~~L~L~~N~i~~~--~~l~~l~~L~~ 176 (263)
T 1xeu_A 107 CLSRLFLDNNE-LRDT--D-SLIHLKNLEILSIRNNK-LKSI--VMLG-FLSKLEVLDLHGNEITNT--GGLTRLKKVNW 176 (263)
T ss_dssp SCCEEECCSSC-CSBS--G-GGTTCTTCCEEECTTSC-CCBC--GGGG-GCTTCCEEECTTSCCCBC--TTSTTCCCCCE
T ss_pred cccEEEccCCc-cCCC--h-hhcCcccccEEECCCCc-CCCC--hHHc-cCCCCCEEECCCCcCcch--HHhccCCCCCE
Confidence 78888888775 4332 1 13467778888887744 4432 2233 677788888888777765 55667777888
Q ss_pred EeeCCCCccC
Q 012207 435 LKLGICSNIT 444 (468)
Q Consensus 435 L~l~~~~~l~ 444 (468)
|++++| .++
T Consensus 177 L~l~~N-~~~ 185 (263)
T 1xeu_A 177 IDLTGQ-KCV 185 (263)
T ss_dssp EEEEEE-EEE
T ss_pred EeCCCC-ccc
Confidence 888777 554
|
| >2ell_A Acidic leucine-rich nuclear phosphoprotein 32 FAM B; phapi2 protein, silver-stainable protein SSP29, acidic prote in leucines, structural genomics; NMR {Homo sapiens} PDB: 2rr6_A 2jqd_A | Back alignment and structure |
|---|
Probab=99.14 E-value=4.1e-12 Score=101.93 Aligned_cols=109 Identities=19% Similarity=0.213 Sum_probs=62.1
Q ss_pred hCCCCCeEecCCCCCCCHHHHHHHHhcCCcCCeEEccCCCCCCHHHHHHHHhcCCCCCEEEccCCCCChhh-HHhcccCC
Q 012207 352 SHKELRKLDITCCRKITYASINSITKTCTSLTSLRMECCKLVSWEAFVLIGQQCQYLEELDITENEVNDEG-LKSISRCS 430 (468)
Q Consensus 352 ~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~-~~~l~~~~ 430 (468)
.+++|+.|++++|. ++.. .....+++|++|++++|. ++.. +......+++|+.|++++|.+++.. +..+..++
T Consensus 47 ~l~~L~~L~l~~n~-l~~~---~~~~~l~~L~~L~Ls~N~-l~~~-~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~l~~l~ 120 (168)
T 2ell_A 47 EFVNLEFLSLINVG-LISV---SNLPKLPKLKKLELSENR-IFGG-LDMLAEKLPNLTHLNLSGNKLKDISTLEPLKKLE 120 (168)
T ss_dssp GGGGCCEEEEESSC-CCCC---SSCCCCSSCCEEEEESCC-CCSC-CCHHHHHCTTCCEEECBSSSCCSSGGGGGGSSCS
T ss_pred hCCCCCEEeCcCCC-CCCh---hhhccCCCCCEEECcCCc-CchH-HHHHHhhCCCCCEEeccCCccCcchhHHHHhcCC
Confidence 44555555555544 2221 122345666666666644 3321 2233335677777777777776642 24566677
Q ss_pred CCCEEeeCCCCccCHHHH--HHHHhcCcccCeeecCCCC
Q 012207 431 KLSSLKLGICSNITDEGL--KHVGSTCSMLKELDLYRFS 467 (468)
Q Consensus 431 ~L~~L~l~~~~~l~~~~~--~~~~~~~~~L~~L~l~~c~ 467 (468)
+|+.|++++| .++.... ......+|+|+.|++.+|+
T Consensus 121 ~L~~L~l~~N-~l~~~~~~~~~~~~~l~~L~~L~l~~n~ 158 (168)
T 2ell_A 121 CLKSLDLFNC-EVTNLNDYRESVFKLLPQLTYLDGYDRE 158 (168)
T ss_dssp CCCEEECCSS-GGGTSTTHHHHHHTTCSSCCEETTEETT
T ss_pred CCCEEEeeCC-cCcchHHHHHHHHHhCccCcEecCCCCC
Confidence 7777777777 6654221 1245567777777777764
|
| >3sb4_A Hypothetical leucine rich repeat protein; LRR, right-handed beta-alpha superhelix, leucine-rich repeat structural genomics; HET: MSE PG4; 1.99A {Bacteroides thetaiotaomicron} | Back alignment and structure |
|---|
Probab=99.14 E-value=1.8e-12 Score=116.33 Aligned_cols=292 Identities=13% Similarity=0.061 Sum_probs=171.6
Q ss_pred CCCCcEEEccCCCccCHHHHHHHHc-CCCCCeEeccCCcccChHhHHHHHhcCCCCcEEeccCCCCCChHHHHHHHhh--
Q 012207 124 CRFLTEIDLSNGTEMGDAAAAAIAE-AKNLERLWLARCKLITDLGIGRIAACCRKLKLLCLKWCIRVTDLGVELVALK-- 200 (468)
Q Consensus 124 ~~~L~~L~l~~~~~~~~~~~~~l~~-~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~-- 200 (468)
.+++++|.+++. +....+..+.. +++|+.|+++++. +...... ...++.++.+.+... .+.+. .+..
T Consensus 24 ~~~l~~L~l~g~--i~~~~~~~l~~~l~~L~~LdLs~n~-i~~~~~~--~~~~~~~~~~~~~~~-~I~~~----aF~~~~ 93 (329)
T 3sb4_A 24 ANSITHLTLTGK--LNAEDFRHLRDEFPSLKVLDISNAE-IKMYSGK--AGTYPNGKFYIYMAN-FVPAY----AFSNVV 93 (329)
T ss_dssp HHHCSEEEEEEE--ECHHHHHHHHHSCTTCCEEEEEEEE-ECCEEES--SSSSGGGCCEEECTT-EECTT----TTEEEE
T ss_pred hCceeEEEEecc--ccHHHHHHHHHhhccCeEEecCcce-eEEecCc--ccccccccccccccc-ccCHH----Hhcccc
Confidence 457899999874 55566677777 8999999999865 3200000 001222222322221 22221 1235
Q ss_pred ------CCCccEeeecccCCCCCCccccccCCCCCeeeecCCCCCChHHHHHHHhcCCCCCEEEccCCccc-ChhhH-HH
Q 012207 201 ------CQEIRTLDLSYLPITEKCLPPVVKLQYLEDLVLEGCHGIDDDGLASVEYSCKSLKALNLSKCQNI-SHVGL-SS 272 (468)
Q Consensus 201 ------~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~~L~~L~l~~~~~~-~~~~~-~~ 272 (468)
|++|+.+++.. .+.......+..+++|+.+.+..+ .+......++.. +.++..+........ ....+ ..
T Consensus 94 ~~~~~g~~~L~~l~L~~-~i~~I~~~aF~~~~~L~~l~l~~n-~i~~i~~~aF~~-~~~l~~l~~~~~~~~~~~~~i~~~ 170 (329)
T 3sb4_A 94 NGVTKGKQTLEKVILSE-KIKNIEDAAFKGCDNLKICQIRKK-TAPNLLPEALAD-SVTAIFIPLGSSDAYRFKNRWEHF 170 (329)
T ss_dssp TTEEEECTTCCC-CBCT-TCCEECTTTTTTCTTCCEEEBCCS-SCCEECTTSSCT-TTCEEEECTTCTHHHHTSTTTTTS
T ss_pred cccccccCCCcEEECCc-cccchhHHHhhcCcccceEEcCCC-CccccchhhhcC-CCceEEecCcchhhhhcccccccc
Confidence 88888888887 555444456677888888888873 333322233333 555665554431100 00000 00
Q ss_pred HHhcCCccc-eEeecCCCCCchhHHHHhhcCCCCCeeEecCCcCChhHHHHHHHhCCCCCeEecccCCCCCHHHHHHHHH
Q 012207 273 LIKGADYLQ-QLILAYSFWVSADLSKCLHNFPMLQSIKFEDCPVARSGIKAIGNWHGSLKELSLSKCSGVTDEELSFVVQ 351 (468)
Q Consensus 273 ~~~~~~~L~-~L~l~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~l~~~~~~L~~L~l~~~~~~~~~~l~~~~~ 351 (468)
.+..+..|+ .+.+.....+.......-....+++.+.+.+. +....+..+...+++|++++++++ .++..+ ...+.
T Consensus 171 ~f~~~~~L~~~i~~~~~~~l~~~~~~~~~~~~~~~~l~~~~~-l~~~~~~~l~~~~~~L~~l~L~~n-~i~~I~-~~aF~ 247 (329)
T 3sb4_A 171 AFIEGEPLETTIQVGAMGKLEDEIMKAGLQPRDINFLTIEGK-LDNADFKLIRDYMPNLVSLDISKT-NATTIP-DFTFA 247 (329)
T ss_dssp CEEESCCCEEEEEECTTCCHHHHHHHTTCCGGGCSEEEEEEC-CCHHHHHHHHHHCTTCCEEECTTB-CCCEEC-TTTTT
T ss_pred ccccccccceeEEecCCCcHHHHHhhcccCccccceEEEeee-ecHHHHHHHHHhcCCCeEEECCCC-Ccceec-Hhhhh
Confidence 022344555 44554433333333322224557778877764 555666666667899999999873 343221 22356
Q ss_pred hCCCCCeEecCCCCCCCHHHHHHHHhcCCcCC-eEEccCCCCCCHHHHHHHHhcCCCCCEEEccCCCCChhhHHhcccCC
Q 012207 352 SHKELRKLDITCCRKITYASINSITKTCTSLT-SLRMECCKLVSWEAFVLIGQQCQYLEELDITENEVNDEGLKSISRCS 430 (468)
Q Consensus 352 ~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~-~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~ 430 (468)
+|++|+++++.++ ++..+-. .+.+|++|+ .+.+.. .++.-+-..+. .|++|+.+++.++.++..+...+..++
T Consensus 248 ~~~~L~~l~l~~n--i~~I~~~-aF~~~~~L~~~l~l~~--~l~~I~~~aF~-~c~~L~~l~l~~n~i~~I~~~aF~~~~ 321 (329)
T 3sb4_A 248 QKKYLLKIKLPHN--LKTIGQR-VFSNCGRLAGTLELPA--SVTAIEFGAFM-GCDNLRYVLATGDKITTLGDELFGNGV 321 (329)
T ss_dssp TCTTCCEEECCTT--CCEECTT-TTTTCTTCCEEEEECT--TCCEECTTTTT-TCTTEEEEEECSSCCCEECTTTTCTTC
T ss_pred CCCCCCEEECCcc--cceehHH-HhhCChhccEEEEEcc--cceEEchhhhh-CCccCCEEEeCCCccCccchhhhcCCc
Confidence 7899999999865 3322221 224789999 999975 34433333343 899999999999999988888899999
Q ss_pred CCCEEee
Q 012207 431 KLSSLKL 437 (468)
Q Consensus 431 ~L~~L~l 437 (468)
+|+.|..
T Consensus 322 ~L~~ly~ 328 (329)
T 3sb4_A 322 PSKLIYK 328 (329)
T ss_dssp CCCEEEC
T ss_pred chhhhcc
Confidence 9999863
|
| >1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A* | Back alignment and structure |
|---|
Probab=99.10 E-value=1.8e-12 Score=124.33 Aligned_cols=156 Identities=13% Similarity=0.190 Sum_probs=109.5
Q ss_pred hHHHHhhcCCCCCeeE-ecCCcCC--------hhHHHHHHHhCCCCCeEecccCCCCCHHHHHHHHHhCCCCCeEecCCC
Q 012207 294 DLSKCLHNFPMLQSIK-FEDCPVA--------RSGIKAIGNWHGSLKELSLSKCSGVTDEELSFVVQSHKELRKLDITCC 364 (468)
Q Consensus 294 ~~~~~l~~~~~L~~L~-l~~~~~~--------~~~~~~l~~~~~~L~~L~l~~~~~~~~~~l~~~~~~~~~L~~L~l~~~ 364 (468)
..+..+..+++|+.|+ +..+.+. ...+..+ ....|+.|+++++ .++. ++. +..+++|+.|++++|
T Consensus 400 ~~~~~l~~l~~L~~L~~l~~n~~~~L~~l~l~~n~i~~l--~~~~L~~L~Ls~n-~l~~--lp~-~~~l~~L~~L~Ls~N 473 (567)
T 1dce_A 400 YEKETLQYFSTLKAVDPMRAAYLDDLRSKFLLENSVLKM--EYADVRVLHLAHK-DLTV--LCH-LEQLLLVTHLDLSHN 473 (567)
T ss_dssp GHHHHHHHHHHHHHHCGGGHHHHHHHHHHHHHHHHHHHH--HHTTCSEEECTTS-CCSS--CCC-GGGGTTCCEEECCSS
T ss_pred CCHHHHHHHHhcccCcchhhcccchhhhhhhhccccccc--CccCceEEEecCC-CCCC--CcC-ccccccCcEeecCcc
Confidence 4455566667777776 4443221 1122222 2347999999985 5553 344 667899999999988
Q ss_pred CCCCHHHHHHHHhcCCcCCeEEccCCCCCCHHHHHHHHhcCCCCCEEEccCCCCChhh-HHhcccCCCCCEEeeCCCCcc
Q 012207 365 RKITYASINSITKTCTSLTSLRMECCKLVSWEAFVLIGQQCQYLEELDITENEVNDEG-LKSISRCSKLSSLKLGICSNI 443 (468)
Q Consensus 365 ~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~-~~~l~~~~~L~~L~l~~~~~l 443 (468)
. ++ .++.....+++|+.|+++++. ++. ++.+. .+++|+.|++++|.++... +..+..+++|+.|++++| .+
T Consensus 474 ~-l~--~lp~~~~~l~~L~~L~Ls~N~-l~~--lp~l~-~l~~L~~L~Ls~N~l~~~~~p~~l~~l~~L~~L~L~~N-~l 545 (567)
T 1dce_A 474 R-LR--ALPPALAALRCLEVLQASDNA-LEN--VDGVA-NLPRLQELLLCNNRLQQSAAIQPLVSCPRLVLLNLQGN-SL 545 (567)
T ss_dssp C-CC--CCCGGGGGCTTCCEEECCSSC-CCC--CGGGT-TCSSCCEEECCSSCCCSSSTTGGGGGCTTCCEEECTTS-GG
T ss_pred c-cc--ccchhhhcCCCCCEEECCCCC-CCC--CcccC-CCCCCcEEECCCCCCCCCCCcHHHhcCCCCCEEEecCC-cC
Confidence 6 44 233344579999999999854 553 33444 8999999999999998875 678889999999999999 77
Q ss_pred CHH--HHHHHHhcCcccCeeec
Q 012207 444 TDE--GLKHVGSTCSMLKELDL 463 (468)
Q Consensus 444 ~~~--~~~~~~~~~~~L~~L~l 463 (468)
+.. ....+...+|+|+.|++
T Consensus 546 ~~~~~~~~~l~~~lp~L~~L~l 567 (567)
T 1dce_A 546 CQEEGIQERLAEMLPSVSSILT 567 (567)
T ss_dssp GGSSSCTTHHHHHCTTCSEEEC
T ss_pred CCCccHHHHHHHHCcccCccCC
Confidence 642 23345567999999864
|
| >1io0_A Tropomodulin; LRR protein, right-handed super-helix, protein binding; 1.45A {Gallus gallus} SCOP: c.10.1.1 | Back alignment and structure |
|---|
Probab=99.10 E-value=2.9e-09 Score=86.30 Aligned_cols=128 Identities=16% Similarity=0.190 Sum_probs=94.1
Q ss_pred chhHHHHhhcCCCCCeeEecCC-cCChhHHHHHHH---hCCCCCeEecccCCCCCHHHHHHH---HHhCCCCCeEecCCC
Q 012207 292 SADLSKCLHNFPMLQSIKFEDC-PVARSGIKAIGN---WHGSLKELSLSKCSGVTDEELSFV---VQSHKELRKLDITCC 364 (468)
Q Consensus 292 ~~~~~~~l~~~~~L~~L~l~~~-~~~~~~~~~l~~---~~~~L~~L~l~~~~~~~~~~l~~~---~~~~~~L~~L~l~~~ 364 (468)
...+...+...++|++|++++| .+.+.+...++. ..++|++|+|+++ .+++.+...+ +...++|++|++++|
T Consensus 25 ~~~l~~~l~~~~~L~~L~L~~n~~i~~~g~~~l~~~L~~~~~L~~L~Ls~n-~i~~~g~~~l~~~L~~n~~L~~L~L~~N 103 (185)
T 1io0_A 25 EETLKRIQNNDPDLEEVNLNNIMNIPVPTLKACAEALKTNTYVKKFSIVGT-RSNDPVAFALAEMLKVNNTLKSLNVESN 103 (185)
T ss_dssp HHHHHHHHTTCTTCCEEECTTCTTCCHHHHHHHHHHHTTCCSCCEEECTTS-CCCHHHHHHHHHHHHHCSSCCEEECCSS
T ss_pred HHHHHHHHhcCCCCCEEEecCCCCCCHHHHHHHHHHHHhCCCcCEEECcCC-CCChHHHHHHHHHHHhCCCcCEEECcCC
Confidence 3445666778888999999988 888887777664 3568899999884 6887775544 344578999999887
Q ss_pred CCCCHHHHHHHHh---cCCcCCeEEc--cCCCCCCHHHHHHHH---hcCCCCCEEEccCCCCChhh
Q 012207 365 RKITYASINSITK---TCTSLTSLRM--ECCKLVSWEAFVLIG---QQCQYLEELDITENEVNDEG 422 (468)
Q Consensus 365 ~~~~~~~~~~~~~---~~~~L~~L~l--~~~~~~~~~~~~~~~---~~~~~L~~L~l~~~~~~~~~ 422 (468)
. +++.+...++. ..++|++|++ ++ +.+++.+...+. ...++|++|++++|.+++.+
T Consensus 104 ~-i~~~g~~~l~~~L~~n~~L~~L~L~~~~-N~i~~~g~~~l~~~L~~n~~L~~L~L~~n~i~~~~ 167 (185)
T 1io0_A 104 F-ISGSGILALVEALQSNTSLIELRIDNQS-QPLGNNVEMEIANMLEKNTTLLKFGYHFTQQGPRL 167 (185)
T ss_dssp C-CCHHHHHHHHHGGGGCSSCCEEECCCCS-SCCCHHHHHHHHHHHHHCSSCCEEECCCSSHHHHH
T ss_pred c-CCHHHHHHHHHHHHhCCCceEEEecCCC-CCCCHHHHHHHHHHHHhCCCcCEEeccCCCCChHH
Confidence 6 88887666654 4578999999 55 558887755544 35678999999888887765
|
| >4ay9_X Follicle-stimulating hormone receptor; hormone-receptor complex, leucine-rich repeats, LRR, GPCR; HET: TYS NAG; 2.50A {Homo sapiens} PDB: 1xwd_C* | Back alignment and structure |
|---|
Probab=99.09 E-value=3.2e-13 Score=122.35 Aligned_cols=36 Identities=8% Similarity=0.007 Sum_probs=23.9
Q ss_pred CCccEeeecccCCCCCCccccccCCCCCeeeecCCC
Q 012207 202 QEIRTLDLSYLPITEKCLPPVVKLQYLEDLVLEGCH 237 (468)
Q Consensus 202 ~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~ 237 (468)
+++++|+++++.++......+.++++|++|+++++.
T Consensus 30 ~~l~~L~Ls~N~i~~i~~~~f~~l~~L~~L~Ls~N~ 65 (350)
T 4ay9_X 30 RNAIELRFVLTKLRVIQKGAFSGFGDLEKIEISQND 65 (350)
T ss_dssp TTCSEEEEESCCCSEECTTSSTTCTTCCEEEEECCT
T ss_pred CCCCEEEccCCcCCCcCHHHHcCCCCCCEEECcCCC
Confidence 567777777777664333456667777777777743
|
| >2je0_A Acidic leucine-rich nuclear phosphoprotein 32 FAM member A; nuclear protein; 2.40A {Homo sapiens} PDB: 2je1_A | Back alignment and structure |
|---|
Probab=99.07 E-value=3.5e-10 Score=88.52 Aligned_cols=129 Identities=19% Similarity=0.126 Sum_probs=62.4
Q ss_pred CCccEeeecccCCC-CCCccccccCCCCCeeeecCCCCCChHHHHHHHhcCCCCCEEEccCCcccChhhHHHHHhcCCcc
Q 012207 202 QEIRTLDLSYLPIT-EKCLPPVVKLQYLEDLVLEGCHGIDDDGLASVEYSCKSLKALNLSKCQNISHVGLSSLIKGADYL 280 (468)
Q Consensus 202 ~~L~~L~l~~~~~~-~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L 280 (468)
++|+.|+++++.+. ......+..+++|++|+++++ .+... ..+.. +++|+.|+++++..... +...+..+++|
T Consensus 17 ~~l~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n-~l~~~--~~~~~-l~~L~~L~Ls~n~i~~~--~~~~~~~l~~L 90 (149)
T 2je0_A 17 SDVKELVLDNSRSNEGKLEGLTDEFEELEFLSTINV-GLTSI--ANLPK-LNKLKKLELSDNRVSGG--LEVLAEKCPNL 90 (149)
T ss_dssp GGCSEEECTTCBCBTTBCCSCCTTCTTCCEEECTTS-CCCCC--TTCCC-CTTCCEEECCSSCCCSC--THHHHHHCTTC
T ss_pred ccCeEEEccCCcCChhHHHHHHhhcCCCcEEECcCC-CCCCc--hhhhc-CCCCCEEECCCCcccch--HHHHhhhCCCC
Confidence 45666666666554 222233345666666666653 33322 22222 55666666655542221 22333445555
Q ss_pred ceEeecCCCCCchhHHHHhhcCCCCCeeEecCCcCChhHH--HHHHHhCCCCCeEecc
Q 012207 281 QQLILAYSFWVSADLSKCLHNFPMLQSIKFEDCPVARSGI--KAIGNWHGSLKELSLS 336 (468)
Q Consensus 281 ~~L~l~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~--~~l~~~~~~L~~L~l~ 336 (468)
+.|+++++....-..+..+..+++|++|++++|.+++... ......+++|+.|+++
T Consensus 91 ~~L~ls~N~i~~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~~~~l~~L~~L~l~ 148 (149)
T 2je0_A 91 THLNLSGNKIKDLSTIEPLKKLENLKSLDLFNCEVTNLNDYRENVFKLLPQLTYLDGY 148 (149)
T ss_dssp CEEECTTSCCCSHHHHGGGGGCTTCCEEECTTCGGGGSTTHHHHHHHHCTTCCEETTB
T ss_pred CEEECCCCcCCChHHHHHHhhCCCCCEEeCcCCcccchHHHHHHHHHHCCCcccccCC
Confidence 5555555532211233455566666666666666544322 1222245666666554
|
| >1xeu_A Internalin C; cellular invasion, leucine-rich repeat, cell invasion; 2.05A {Listeria monocytogenes} | Back alignment and structure |
|---|
Probab=99.05 E-value=1.1e-10 Score=100.90 Aligned_cols=170 Identities=14% Similarity=0.110 Sum_probs=112.7
Q ss_pred CCCCeeeecCCCCCChHHHHHHHhcCCCCCEEEccCCcccChhhHHHHHhcCCccceEeecCCCCCchhHHHHhhcCCCC
Q 012207 226 QYLEDLVLEGCHGIDDDGLASVEYSCKSLKALNLSKCQNISHVGLSSLIKGADYLQQLILAYSFWVSADLSKCLHNFPML 305 (468)
Q Consensus 226 ~~L~~L~l~~~~~~~~~~~~~l~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~L 305 (468)
.++..+++++ ..+.+.. .+.. +++|+.|+++++.. .... .+..+++|+.|+++++. +..... +..+++|
T Consensus 19 ~~l~~l~l~~-~~i~~~~--~~~~-l~~L~~L~l~~n~i-~~l~---~l~~l~~L~~L~L~~N~-i~~~~~--l~~l~~L 87 (263)
T 1xeu_A 19 ANAVKQNLGK-QSVTDLV--SQKE-LSGVQNFNGDNSNI-QSLA---GMQFFTNLKELHLSHNQ-ISDLSP--LKDLTKL 87 (263)
T ss_dssp HHHHHHHHTC-SCTTSEE--CHHH-HTTCSEEECTTSCC-CCCT---TGGGCTTCCEEECCSSC-CCCCGG--GTTCSSC
T ss_pred HHHHHHHhcC-CCccccc--chhh-cCcCcEEECcCCCc-ccch---HHhhCCCCCEEECCCCc-cCCChh--hccCCCC
Confidence 3444455554 2333222 2333 78899999998753 3221 25667899999998874 333322 7888999
Q ss_pred CeeEecCCcCChhHHHHHHHhCCCCCeEecccCCCCCHHHHHHHHHhCCCCCeEecCCCCCCCHHHHHHHHhcCCcCCeE
Q 012207 306 QSIKFEDCPVARSGIKAIGNWHGSLKELSLSKCSGVTDEELSFVVQSHKELRKLDITCCRKITYASINSITKTCTSLTSL 385 (468)
Q Consensus 306 ~~L~l~~~~~~~~~~~~l~~~~~~L~~L~l~~~~~~~~~~l~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L 385 (468)
+.|++++|.+.+.. .+. . ++|++|+++++ .+++. . .+..+++|+.|++++|. +++.. ....+++|+.|
T Consensus 88 ~~L~L~~N~l~~l~--~~~-~-~~L~~L~L~~N-~l~~~--~-~l~~l~~L~~L~Ls~N~-i~~~~---~l~~l~~L~~L 155 (263)
T 1xeu_A 88 EELSVNRNRLKNLN--GIP-S-ACLSRLFLDNN-ELRDT--D-SLIHLKNLEILSIRNNK-LKSIV---MLGFLSKLEVL 155 (263)
T ss_dssp CEEECCSSCCSCCT--TCC-C-SSCCEEECCSS-CCSBS--G-GGTTCTTCCEEECTTSC-CCBCG---GGGGCTTCCEE
T ss_pred CEEECCCCccCCcC--ccc-c-CcccEEEccCC-ccCCC--h-hhcCcccccEEECCCCc-CCCCh---HHccCCCCCEE
Confidence 99999999876522 121 2 78999999985 55542 2 25578899999999886 44332 23578999999
Q ss_pred EccCCCCCCHHHHHHHHhcCCCCCEEEccCCCCChhh
Q 012207 386 RMECCKLVSWEAFVLIGQQCQYLEELDITENEVNDEG 422 (468)
Q Consensus 386 ~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~ 422 (468)
+++++. +++. ..+ ..+++|+.|++++|.++...
T Consensus 156 ~L~~N~-i~~~--~~l-~~l~~L~~L~l~~N~~~~~~ 188 (263)
T 1xeu_A 156 DLHGNE-ITNT--GGL-TRLKKVNWIDLTGQKCVNEP 188 (263)
T ss_dssp ECTTSC-CCBC--TTS-TTCCCCCEEEEEEEEEECCC
T ss_pred ECCCCc-Ccch--HHh-ccCCCCCEEeCCCCcccCCc
Confidence 998854 5443 233 37889999999998776653
|
| >1fs1_A SKP2 F-BOX, cyclin A/CDK2-associated P19; F-BOX, LRR, leucine-rich repeat, SCF, ubiquitin, ubiquitin protein ligase; 1.80A {Homo sapiens} SCOP: a.158.1.1 PDB: 1ldk_E | Back alignment and structure |
|---|
Probab=99.01 E-value=2.7e-10 Score=70.56 Aligned_cols=41 Identities=20% Similarity=0.327 Sum_probs=35.1
Q ss_pred CCCCcccCcHHHHHHHHhhhcCChhhhhHHhhhhhhHHHHHHh
Q 012207 8 NSNPFDFLSEEIIFNILDHLNNDPFARKSFSLTCRNFYSIESR 50 (468)
Q Consensus 8 ~~~~~~~LP~eil~~I~~~~l~~~~~~~~~~~v~~~w~~~~~~ 50 (468)
....+..||+||+.+||+ |++ .+|+.+++.|||+|+.++..
T Consensus 5 ~~~~~~~LP~eil~~I~~-~L~-~~dl~~~~~Vck~w~~~~~~ 45 (53)
T 1fs1_A 5 PGVSWDSLPDELLLGIFS-CLC-LPELLKVSGVCKRWYRLASD 45 (53)
T ss_dssp ----CCSSCHHHHHHHHT-TSC-GGGHHHHHTTCHHHHHHHTC
T ss_pred CCCCHHHCCHHHHHHHHH-cCC-HHHHHHHHHHHHHHHHHhCC
Confidence 345799999999999999 997 99999999999999998864
|
| >2v70_A SLIT-2, SLIT homolog 2 protein N-product; neurogenesis, glycoprotein, secreted, chemotaxis, LRR structural protein, differentiation; HET: NAG; 3.01A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.00 E-value=1.4e-11 Score=103.35 Aligned_cols=151 Identities=12% Similarity=0.108 Sum_probs=95.2
Q ss_pred ceEeecCCCCCchhHHHHhhcCCCCCeeEecCCcCChhHHHHHHHhCCCCCeEecccCCCCCHHHHHHHHHhCCCCCeEe
Q 012207 281 QQLILAYSFWVSADLSKCLHNFPMLQSIKFEDCPVARSGIKAIGNWHGSLKELSLSKCSGVTDEELSFVVQSHKELRKLD 360 (468)
Q Consensus 281 ~~L~l~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~l~~~~~~L~~L~l~~~~~~~~~~l~~~~~~~~~L~~L~ 360 (468)
+.++++++. +. .++..+ .+.++.|+++++.+...........+++|++|+++++ .++... ...+..+++|++|+
T Consensus 14 ~~l~~s~n~-l~-~iP~~~--~~~~~~L~L~~N~l~~~~~~~~~~~l~~L~~L~L~~N-~i~~i~-~~~~~~l~~L~~L~ 87 (220)
T 2v70_A 14 TTVDCSNQK-LN-KIPEHI--PQYTAELRLNNNEFTVLEATGIFKKLPQLRKINFSNN-KITDIE-EGAFEGASGVNEIL 87 (220)
T ss_dssp TEEECCSSC-CS-SCCSCC--CTTCSEEECCSSCCCEECCCCCGGGCTTCCEEECCSS-CCCEEC-TTTTTTCTTCCEEE
T ss_pred CEeEeCCCC-cc-cCccCC--CCCCCEEEcCCCcCCccCchhhhccCCCCCEEECCCC-cCCEEC-HHHhCCCCCCCEEE
Confidence 467776652 22 122111 2467899999988765432222236788999999874 454321 12345678888888
Q ss_pred cCCCCCCCHHHHHHHHhcCCcCCeEEccCCCCCCHHHHHHHHhcCCCCCEEEccCCCCChhhHHhcccCCCCCEEeeCCC
Q 012207 361 ITCCRKITYASINSITKTCTSLTSLRMECCKLVSWEAFVLIGQQCQYLEELDITENEVNDEGLKSISRCSKLSSLKLGIC 440 (468)
Q Consensus 361 l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~ 440 (468)
+++|. ++.... ..+..+++|++|+++++. ++......+. .+++|+.|++++|.++......+..+++|+.|++++|
T Consensus 88 Ls~N~-l~~~~~-~~~~~l~~L~~L~Ls~N~-l~~~~~~~~~-~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N 163 (220)
T 2v70_A 88 LTSNR-LENVQH-KMFKGLESLKTLMLRSNR-ITCVGNDSFI-GLSSVRLLSLYDNQITTVAPGAFDTLHSLSTLNLLAN 163 (220)
T ss_dssp CCSSC-CCCCCG-GGGTTCSSCCEEECTTSC-CCCBCTTSST-TCTTCSEEECTTSCCCCBCTTTTTTCTTCCEEECCSC
T ss_pred CCCCc-cCccCH-hHhcCCcCCCEEECCCCc-CCeECHhHcC-CCccCCEEECCCCcCCEECHHHhcCCCCCCEEEecCc
Confidence 88876 332211 123467888888888744 4432222233 6788888888888888776667777888888888888
Q ss_pred C
Q 012207 441 S 441 (468)
Q Consensus 441 ~ 441 (468)
+
T Consensus 164 ~ 164 (220)
T 2v70_A 164 P 164 (220)
T ss_dssp C
T ss_pred C
Confidence 3
|
| >4ay9_X Follicle-stimulating hormone receptor; hormone-receptor complex, leucine-rich repeats, LRR, GPCR; HET: TYS NAG; 2.50A {Homo sapiens} PDB: 1xwd_C* | Back alignment and structure |
|---|
Probab=98.98 E-value=4.5e-12 Score=114.81 Aligned_cols=225 Identities=11% Similarity=-0.017 Sum_probs=115.6
Q ss_pred CCcEEEccCCCccCHHHHHHHHcCCCCCeEeccCCcccChHhHHHHHhcCCCCcEEeccCCCCCChHHHHHHHhhCCCcc
Q 012207 126 FLTEIDLSNGTEMGDAAAAAIAEAKNLERLWLARCKLITDLGIGRIAACCRKLKLLCLKWCIRVTDLGVELVALKCQEIR 205 (468)
Q Consensus 126 ~L~~L~l~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~ 205 (468)
++++|+++++ .++..+..++..+++|++|+++++...+...... ...++++.++.+.++..++.... ..+..+++|+
T Consensus 31 ~l~~L~Ls~N-~i~~i~~~~f~~l~~L~~L~Ls~N~i~~~i~~~~-f~~L~~l~~~l~~~~N~l~~l~~-~~f~~l~~L~ 107 (350)
T 4ay9_X 31 NAIELRFVLT-KLRVIQKGAFSGFGDLEKIEISQNDVLEVIEADV-FSNLPKLHEIRIEKANNLLYINP-EAFQNLPNLQ 107 (350)
T ss_dssp TCSEEEEESC-CCSEECTTSSTTCTTCCEEEEECCTTCCEECTTS-BCSCTTCCEEEEEEETTCCEECT-TSBCCCTTCC
T ss_pred CCCEEEccCC-cCCCcCHHHHcCCCCCCEEECcCCCCCCccChhH-hhcchhhhhhhcccCCcccccCc-hhhhhccccc
Confidence 4455555544 2333332334445555555555543211111111 11244444433332223322211 1123677888
Q ss_pred EeeecccCCCCCCccccccCCCCCeeeecCCCCCChHHHHHHHhcCCCCCEEEccCCcccChhhHHHHHhcCCccceEee
Q 012207 206 TLDLSYLPITEKCLPPVVKLQYLEDLVLEGCHGIDDDGLASVEYSCKSLKALNLSKCQNISHVGLSSLIKGADYLQQLIL 285 (468)
Q Consensus 206 ~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l 285 (468)
+|+++++.+.......+....++..+++.++..+.......+......++.|+++++.. ... ..-....++|+++.+
T Consensus 108 ~L~l~~n~l~~~~~~~~~~~~~l~~l~l~~~~~i~~l~~~~f~~~~~~l~~L~L~~N~i-~~i--~~~~f~~~~L~~l~l 184 (350)
T 4ay9_X 108 YLLISNTGIKHLPDVHKIHSLQKVLLDIQDNINIHTIERNSFVGLSFESVILWLNKNGI-QEI--HNSAFNGTQLDELNL 184 (350)
T ss_dssp EEEEEEECCSSCCCCTTCCBSSCEEEEEESCTTCCEECTTSSTTSBSSCEEEECCSSCC-CEE--CTTSSTTEEEEEEEC
T ss_pred cccccccccccCCchhhcccchhhhhhhccccccccccccchhhcchhhhhhccccccc-cCC--ChhhccccchhHHhh
Confidence 88888887665444444455667777776655555433333333234677888887652 211 111123456788888
Q ss_pred cCCCCCchhHHHHhhcCCCCCeeEecCCcCChhHHHHHHHhCCCCCeEecccCCCCCHHHHHHHHHhCCCCCeEecCC
Q 012207 286 AYSFWVSADLSKCLHNFPMLQSIKFEDCPVARSGIKAIGNWHGSLKELSLSKCSGVTDEELSFVVQSHKELRKLDITC 363 (468)
Q Consensus 286 ~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~l~~~~~~L~~L~l~~~~~~~~~~l~~~~~~~~~L~~L~l~~ 363 (468)
.++..+.......+..+++|+.|++++|.++.-... .+.+|++|.+.++..+.. ++. +..+++|+.+++.+
T Consensus 185 ~~~n~l~~i~~~~f~~l~~L~~LdLs~N~l~~lp~~----~~~~L~~L~~l~~~~l~~--lP~-l~~l~~L~~l~l~~ 255 (350)
T 4ay9_X 185 SDNNNLEELPNDVFHGASGPVILDISRTRIHSLPSY----GLENLKKLRARSTYNLKK--LPT-LEKLVALMEASLTY 255 (350)
T ss_dssp TTCTTCCCCCTTTTTTEECCSEEECTTSCCCCCCSS----SCTTCCEEECTTCTTCCC--CCC-TTTCCSCCEEECSC
T ss_pred ccCCcccCCCHHHhccCcccchhhcCCCCcCccChh----hhccchHhhhccCCCcCc--CCC-chhCcChhhCcCCC
Confidence 765455444444567778888888888876643221 345677777666544332 121 34567777777754
|
| >2o6s_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 1.50A {Eptatretus burgeri} | Back alignment and structure |
|---|
Probab=98.97 E-value=1.6e-11 Score=102.36 Aligned_cols=58 Identities=14% Similarity=0.019 Sum_probs=28.2
Q ss_pred CccceEeecCCCCCchhHHHHhhcCCCCCeeEecCCcCChhHHHHHHHhCCCCCeEeccc
Q 012207 278 DYLQQLILAYSFWVSADLSKCLHNFPMLQSIKFEDCPVARSGIKAIGNWHGSLKELSLSK 337 (468)
Q Consensus 278 ~~L~~L~l~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~l~~~~~~L~~L~l~~ 337 (468)
++|++|+++++ .+.......+..+++|++|+++++.+.......+. .+++|++|++++
T Consensus 28 ~~l~~L~l~~n-~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~-~l~~L~~L~Ls~ 85 (208)
T 2o6s_A 28 AQTTYLDLETN-SLKSLPNGVFDELTSLTQLYLGGNKLQSLPNGVFN-KLTSLTYLNLST 85 (208)
T ss_dssp TTCSEEECCSS-CCCCCCTTTTTTCTTCSEEECCSSCCCCCCTTTTT-TCTTCCEEECCS
T ss_pred CCCcEEEcCCC-ccCcCChhhhcccccCcEEECCCCccCccChhhcC-CCCCcCEEECCC
Confidence 45666666665 23323333345556666666666555432211111 345555555554
|
| >2ell_A Acidic leucine-rich nuclear phosphoprotein 32 FAM B; phapi2 protein, silver-stainable protein SSP29, acidic prote in leucines, structural genomics; NMR {Homo sapiens} PDB: 2rr6_A 2jqd_A | Back alignment and structure |
|---|
Probab=98.97 E-value=5.3e-10 Score=89.51 Aligned_cols=131 Identities=19% Similarity=0.123 Sum_probs=60.6
Q ss_pred CCccEeeecccCCCC-CCccccccCCCCCeeeecCCCCCChHHHHHHHhcCCCCCEEEccCCcccChhhHHHHHhcCCcc
Q 012207 202 QEIRTLDLSYLPITE-KCLPPVVKLQYLEDLVLEGCHGIDDDGLASVEYSCKSLKALNLSKCQNISHVGLSSLIKGADYL 280 (468)
Q Consensus 202 ~~L~~L~l~~~~~~~-~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L 280 (468)
++|++|+++++.+.+ .....+..+++|++|+++++. +... ..+.. +++|+.|+++++..... +...+..+++|
T Consensus 24 ~~L~~L~l~~n~l~~~~i~~~~~~l~~L~~L~l~~n~-l~~~--~~~~~-l~~L~~L~Ls~N~l~~~--~~~~~~~l~~L 97 (168)
T 2ell_A 24 AAVRELVLDNCKSNDGKIEGLTAEFVNLEFLSLINVG-LISV--SNLPK-LPKLKKLELSENRIFGG--LDMLAEKLPNL 97 (168)
T ss_dssp TSCSEEECCSCBCBTTBCSSCCGGGGGCCEEEEESSC-CCCC--SSCCC-CSSCCEEEEESCCCCSC--CCHHHHHCTTC
T ss_pred ccCCEEECCCCCCChhhHHHHHHhCCCCCEEeCcCCC-CCCh--hhhcc-CCCCCEEECcCCcCchH--HHHHHhhCCCC
Confidence 455566665555542 122223455566666665532 3322 12222 45555555555442211 12233345555
Q ss_pred ceEeecCCCCCchhHHHHhhcCCCCCeeEecCCcCChhHH--HHHHHhCCCCCeEecccC
Q 012207 281 QQLILAYSFWVSADLSKCLHNFPMLQSIKFEDCPVARSGI--KAIGNWHGSLKELSLSKC 338 (468)
Q Consensus 281 ~~L~l~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~--~~l~~~~~~L~~L~l~~~ 338 (468)
+.|+++++....-.....+..+++|++|++++|.+..... ......+++|++|+++++
T Consensus 98 ~~L~Ls~N~l~~~~~~~~l~~l~~L~~L~l~~N~l~~~~~~~~~~~~~l~~L~~L~l~~n 157 (168)
T 2ell_A 98 THLNLSGNKLKDISTLEPLKKLECLKSLDLFNCEVTNLNDYRESVFKLLPQLTYLDGYDR 157 (168)
T ss_dssp CEEECBSSSCCSSGGGGGGSSCSCCCEEECCSSGGGTSTTHHHHHHTTCSSCCEETTEET
T ss_pred CEEeccCCccCcchhHHHHhcCCCCCEEEeeCCcCcchHHHHHHHHHhCccCcEecCCCC
Confidence 5555555422111122445566666666666666543322 112224556666666553
|
| >2xot_A Amphoterin-induced protein 1; cell adhesion, neuronal protein, neurite growth regulation; HET: NAG BMA; 2.00A {Mus musculus} | Back alignment and structure |
|---|
Probab=98.96 E-value=3.7e-11 Score=109.20 Aligned_cols=158 Identities=17% Similarity=0.100 Sum_probs=97.7
Q ss_pred CccceEeecCCCCCchhHHHHhh-cCCCCCeeEecCCcCChhHHHHHHHhCCCCCeEecccCCCCCHHHHHHHHHhCCCC
Q 012207 278 DYLQQLILAYSFWVSADLSKCLH-NFPMLQSIKFEDCPVARSGIKAIGNWHGSLKELSLSKCSGVTDEELSFVVQSHKEL 356 (468)
Q Consensus 278 ~~L~~L~l~~~~~~~~~~~~~l~-~~~~L~~L~l~~~~~~~~~~~~l~~~~~~L~~L~l~~~~~~~~~~l~~~~~~~~~L 356 (468)
+.++.|+++++ .+.......+. .+++|+.|++++|.+.......+. .+++|++|+++++ .++.. ....+..+++|
T Consensus 39 ~~l~~L~Ls~N-~l~~l~~~~~~~~l~~L~~L~L~~N~i~~i~~~~~~-~l~~L~~L~Ls~N-~l~~~-~~~~~~~l~~L 114 (361)
T 2xot_A 39 SYTALLDLSHN-NLSRLRAEWTPTRLTNLHSLLLSHNHLNFISSEAFV-PVPNLRYLDLSSN-HLHTL-DEFLFSDLQAL 114 (361)
T ss_dssp TTCSEEECCSS-CCCEECTTSSSSCCTTCCEEECCSSCCCEECTTTTT-TCTTCCEEECCSS-CCCEE-CTTTTTTCTTC
T ss_pred CCCCEEECCCC-CCCccChhhhhhcccccCEEECCCCcCCccChhhcc-CCCCCCEEECCCC-cCCcC-CHHHhCCCcCC
Confidence 45888999887 44444444455 788899999988887654433333 6788888888874 44431 11234567788
Q ss_pred CeEecCCCCCCCHHHHHHHHhcCCcCCeEEccCCCCCCHHHHHHHH--hcCCCCCEEEccCCCCChhhHHhcccCCC--C
Q 012207 357 RKLDITCCRKITYASINSITKTCTSLTSLRMECCKLVSWEAFVLIG--QQCQYLEELDITENEVNDEGLKSISRCSK--L 432 (468)
Q Consensus 357 ~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~--~~~~~L~~L~l~~~~~~~~~~~~l~~~~~--L 432 (468)
+.|++++|. ++.... ..+..+++|+.|+++++. ++......+. ..+++|+.|++++|.++......+..+++ +
T Consensus 115 ~~L~L~~N~-i~~~~~-~~~~~l~~L~~L~L~~N~-l~~l~~~~~~~~~~l~~L~~L~L~~N~l~~l~~~~~~~l~~~~l 191 (361)
T 2xot_A 115 EVLLLYNNH-IVVVDR-NAFEDMAQLQKLYLSQNQ-ISRFPVELIKDGNKLPKLMLLDLSSNKLKKLPLTDLQKLPAWVK 191 (361)
T ss_dssp CEEECCSSC-CCEECT-TTTTTCTTCCEEECCSSC-CCSCCGGGTC----CTTCCEEECCSSCCCCCCHHHHHHSCHHHH
T ss_pred CEEECCCCc-ccEECH-HHhCCcccCCEEECCCCc-CCeeCHHHhcCcccCCcCCEEECCCCCCCccCHHHhhhccHhhc
Confidence 888888775 332211 112357788888887743 4321111110 25677888888888777766666666665 3
Q ss_pred CEEeeCCCCc
Q 012207 433 SSLKLGICSN 442 (468)
Q Consensus 433 ~~L~l~~~~~ 442 (468)
+.|++++|+-
T Consensus 192 ~~l~l~~N~~ 201 (361)
T 2xot_A 192 NGLYLHNNPL 201 (361)
T ss_dssp TTEECCSSCE
T ss_pred ceEEecCCCc
Confidence 7778877743
|
| >1ds9_A Outer arm dynein; leucine-rich repeat, beta-BETA-alpha cylinder, flagella, contractIle protein; NMR {Chlamydomonas reinhardtii} SCOP: c.10.3.1 PDB: 1m9l_A | Back alignment and structure |
|---|
Probab=98.94 E-value=2.8e-11 Score=99.84 Aligned_cols=58 Identities=19% Similarity=0.220 Sum_probs=27.1
Q ss_pred CCcCCeEEccCCCCCCHHHHHHHHhcCCCCCEEEccCCCCChhhH-HhcccCCCCCEEeeCCC
Q 012207 379 CTSLTSLRMECCKLVSWEAFVLIGQQCQYLEELDITENEVNDEGL-KSISRCSKLSSLKLGIC 440 (468)
Q Consensus 379 ~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~-~~l~~~~~L~~L~l~~~ 440 (468)
+++|+.|++++|. ++. +..+. .+++|+.|++++|.+++... ..+..+++|+.|++++|
T Consensus 92 ~~~L~~L~L~~N~-l~~--l~~~~-~l~~L~~L~l~~N~i~~~~~~~~l~~l~~L~~L~l~~N 150 (198)
T 1ds9_A 92 ADTLEELWISYNQ-IAS--LSGIE-KLVNLRVLYMSNNKITNWGEIDKLAALDKLEDLLLAGN 150 (198)
T ss_dssp HHHCSEEEEEEEE-CCC--HHHHH-HHHHSSEEEESEEECCCHHHHHHHTTTTTCSEEEECSC
T ss_pred CCcCCEEECcCCc-CCc--CCccc-cCCCCCEEECCCCcCCchhHHHHHhcCCCCCEEEecCC
Confidence 3455555555432 222 11222 44555555555555554322 34445555555555555
|
| >3cvr_A Invasion plasmid antigen; leucine rich repeat and alpha fold, ligase; 2.80A {Shigella flexneri 2A} | Back alignment and structure |
|---|
Probab=98.94 E-value=2.8e-09 Score=101.76 Aligned_cols=53 Identities=21% Similarity=0.174 Sum_probs=24.8
Q ss_pred CCCCCeeEecCCcCChhHHHHHHHhCCCCCeEecccCCCCCHHHHHHHHHhCCCCCeEecCCCC
Q 012207 302 FPMLQSIKFEDCPVARSGIKAIGNWHGSLKELSLSKCSGVTDEELSFVVQSHKELRKLDITCCR 365 (468)
Q Consensus 302 ~~~L~~L~l~~~~~~~~~~~~l~~~~~~L~~L~l~~~~~~~~~~l~~~~~~~~~L~~L~l~~~~ 365 (468)
+++|+.|++++|.++.... .+++|++|+++++ .++. ++. +. ++|+.|++++|.
T Consensus 139 l~~L~~L~Ls~N~l~~lp~-----~l~~L~~L~Ls~N-~L~~--lp~-l~--~~L~~L~Ls~N~ 191 (571)
T 3cvr_A 139 PALLEYINADNNQLTMLPE-----LPTSLEVLSVRNN-QLTF--LPE-LP--ESLEALDVSTNL 191 (571)
T ss_dssp CTTCCEEECCSSCCSCCCC-----CCTTCCEEECCSS-CCSC--CCC-CC--TTCCEEECCSSC
T ss_pred CccccEEeCCCCccCcCCC-----cCCCcCEEECCCC-CCCC--cch-hh--CCCCEEECcCCC
Confidence 4555666665555443111 2355666666553 2322 111 11 556666665553
|
| >1a9n_A U2A', U2A'; complex (nuclear protein/RNA), RNA, snRNP, ribonucleoprotein, RNA binding protein/RNA complex; 2.38A {Homo sapiens} SCOP: c.10.2.4 | Back alignment and structure |
|---|
Probab=98.92 E-value=2e-10 Score=92.69 Aligned_cols=134 Identities=13% Similarity=0.118 Sum_probs=76.3
Q ss_pred hcCCCCCeeEecCCcCChhHHHHHHHhCCCCCeEecccCCCCCHHHHHHHHHhCCCCCeEecCCCCCCCHHHHHHHHhcC
Q 012207 300 HNFPMLQSIKFEDCPVARSGIKAIGNWHGSLKELSLSKCSGVTDEELSFVVQSHKELRKLDITCCRKITYASINSITKTC 379 (468)
Q Consensus 300 ~~~~~L~~L~l~~~~~~~~~~~~l~~~~~~L~~L~l~~~~~~~~~~l~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~ 379 (468)
..+++|+.|++++|.+... ..+....++|+.|+++++ .++.. ..+..+++|+.|++++|. ++... ..+...+
T Consensus 16 ~~~~~L~~L~l~~n~l~~i--~~~~~~~~~L~~L~Ls~N-~l~~~---~~l~~l~~L~~L~Ls~N~-l~~~~-~~~~~~l 87 (176)
T 1a9n_A 16 TNAVRDRELDLRGYKIPVI--ENLGATLDQFDAIDFSDN-EIRKL---DGFPLLRRLKTLLVNNNR-ICRIG-EGLDQAL 87 (176)
T ss_dssp ECTTSCEEEECTTSCCCSC--CCGGGGTTCCSEEECCSS-CCCEE---CCCCCCSSCCEEECCSSC-CCEEC-SCHHHHC
T ss_pred CCcCCceEEEeeCCCCchh--HHhhhcCCCCCEEECCCC-CCCcc---cccccCCCCCEEECCCCc-ccccC-cchhhcC
Confidence 3567888888888877642 223323458888888874 44431 223456677777777765 33221 1122356
Q ss_pred CcCCeEEccCCCCCCHHH-HHHHHhcCCCCCEEEccCCCCChhhHH---hcccCCCCCEEeeCCCCccC
Q 012207 380 TSLTSLRMECCKLVSWEA-FVLIGQQCQYLEELDITENEVNDEGLK---SISRCSKLSSLKLGICSNIT 444 (468)
Q Consensus 380 ~~L~~L~l~~~~~~~~~~-~~~~~~~~~~L~~L~l~~~~~~~~~~~---~l~~~~~L~~L~l~~~~~l~ 444 (468)
++|++|+++++. ++... +..+. .+++|+.|++++|.++..... .+..+++|+.|++++| ...
T Consensus 88 ~~L~~L~L~~N~-i~~~~~~~~l~-~l~~L~~L~l~~N~i~~~~~~~~~~~~~l~~L~~Ld~~~n-~~~ 153 (176)
T 1a9n_A 88 PDLTELILTNNS-LVELGDLDPLA-SLKSLTYLCILRNPVTNKKHYRLYVIYKVPQVRVLDFQKV-KLK 153 (176)
T ss_dssp TTCCEEECCSCC-CCCGGGGGGGG-GCTTCCEEECCSSGGGGSTTHHHHHHHHCTTCSEETTEEC-CHH
T ss_pred CCCCEEECCCCc-CCcchhhHhhh-cCCCCCEEEecCCCCCCcHhHHHHHHHHCCccceeCCCcC-CHH
Confidence 777777777643 33211 12232 566777777777666543322 3456677777777766 443
|
| >2v9t_B SLIT homolog 2 protein N-product; structural protein-receptor complex, developmental protein, domain, roundabout, chemotaxis, LRR domain; 1.70A {Homo sapiens} PDB: 2v9s_A | Back alignment and structure |
|---|
Probab=98.90 E-value=7.6e-11 Score=98.86 Aligned_cols=132 Identities=16% Similarity=0.150 Sum_probs=89.1
Q ss_pred CCCCeeEecCCcCChhHHHHHHHhCCCCCeEecccCCCCCHHHHHHHHHhCCCCCeEecCCCCCCCHHHHHHHHhcCCcC
Q 012207 303 PMLQSIKFEDCPVARSGIKAIGNWHGSLKELSLSKCSGVTDEELSFVVQSHKELRKLDITCCRKITYASINSITKTCTSL 382 (468)
Q Consensus 303 ~~L~~L~l~~~~~~~~~~~~l~~~~~~L~~L~l~~~~~~~~~~l~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L 382 (468)
++|+.|+++++.+.......+. .+++|++|+++++ .++.. .+..+..+++|++|++++|. ++... ...+..+++|
T Consensus 32 ~~l~~L~l~~n~i~~i~~~~~~-~l~~L~~L~Ls~N-~i~~~-~~~~~~~l~~L~~L~Ls~N~-l~~l~-~~~f~~l~~L 106 (220)
T 2v9t_B 32 ETITEIRLEQNTIKVIPPGAFS-PYKKLRRIDLSNN-QISEL-APDAFQGLRSLNSLVLYGNK-ITELP-KSLFEGLFSL 106 (220)
T ss_dssp TTCCEEECCSSCCCEECTTSST-TCTTCCEEECCSS-CCCEE-CTTTTTTCSSCCEEECCSSC-CCCCC-TTTTTTCTTC
T ss_pred cCCCEEECCCCcCCCcCHhHhh-CCCCCCEEECCCC-cCCCc-CHHHhhCCcCCCEEECCCCc-CCccC-HhHccCCCCC
Confidence 5899999999987754433333 5788999999884 44432 12335567889999998876 43221 1122467888
Q ss_pred CeEEccCCCCCCHHHHHHHHhcCCCCCEEEccCCCCChhhHHhcccCCCCCEEeeCCCC
Q 012207 383 TSLRMECCKLVSWEAFVLIGQQCQYLEELDITENEVNDEGLKSISRCSKLSSLKLGICS 441 (468)
Q Consensus 383 ~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~ 441 (468)
+.|+++++. ++......+. .+++|+.|++++|.++......+..+++|+.|++++|+
T Consensus 107 ~~L~L~~N~-l~~~~~~~~~-~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~ 163 (220)
T 2v9t_B 107 QLLLLNANK-INCLRVDAFQ-DLHNLNLLSLYDNKLQTIAKGTFSPLRAIQTMHLAQNP 163 (220)
T ss_dssp CEEECCSSC-CCCCCTTTTT-TCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSC
T ss_pred CEEECCCCC-CCEeCHHHcC-CCCCCCEEECCCCcCCEECHHHHhCCCCCCEEEeCCCC
Confidence 888888743 4433222333 67888888888888887766667778888888888884
|
| >3cvr_A Invasion plasmid antigen; leucine rich repeat and alpha fold, ligase; 2.80A {Shigella flexneri 2A} | Back alignment and structure |
|---|
Probab=98.89 E-value=3e-10 Score=108.39 Aligned_cols=189 Identities=12% Similarity=0.064 Sum_probs=127.3
Q ss_pred CCCCeeeecCCCCCChHHHHHHHhcCCCCCEEEccCCcccChhhHHHHHhcCCccceEeecCCCCCchhHHHHhhcCCCC
Q 012207 226 QYLEDLVLEGCHGIDDDGLASVEYSCKSLKALNLSKCQNISHVGLSSLIKGADYLQQLILAYSFWVSADLSKCLHNFPML 305 (468)
Q Consensus 226 ~~L~~L~l~~~~~~~~~~~~~l~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~L 305 (468)
.+|+.|+++++ .+..... . ..++|+.|+++++.. ... . ..+++|+.|+++++. +.. ++. +.. +|
T Consensus 59 ~~L~~L~Ls~n-~L~~lp~-~---l~~~L~~L~Ls~N~l-~~i--p---~~l~~L~~L~Ls~N~-l~~-ip~-l~~--~L 122 (571)
T 3cvr_A 59 NQFSELQLNRL-NLSSLPD-N---LPPQITVLEITQNAL-ISL--P---ELPASLEYLDACDNR-LST-LPE-LPA--SL 122 (571)
T ss_dssp TTCSEEECCSS-CCSCCCS-C---CCTTCSEEECCSSCC-SCC--C---CCCTTCCEEECCSSC-CSC-CCC-CCT--TC
T ss_pred CCccEEEeCCC-CCCccCH-h---HcCCCCEEECcCCCC-ccc--c---cccCCCCEEEccCCC-CCC-cch-hhc--CC
Confidence 38999999985 4443211 1 147899999999863 322 2 457899999999873 333 332 333 99
Q ss_pred CeeEecCCcCChhHHHHHHHhCCCCCeEecccCCCCCHHHHHHHHHhCCCCCeEecCCCCCCCHHHHHHHHhcCCcCCeE
Q 012207 306 QSIKFEDCPVARSGIKAIGNWHGSLKELSLSKCSGVTDEELSFVVQSHKELRKLDITCCRKITYASINSITKTCTSLTSL 385 (468)
Q Consensus 306 ~~L~l~~~~~~~~~~~~l~~~~~~L~~L~l~~~~~~~~~~l~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L 385 (468)
++|++++|.++.... .+++|+.|+++++ .++. ++. .+++|+.|++++|. ++.. .. . .++|+.|
T Consensus 123 ~~L~Ls~N~l~~lp~-----~l~~L~~L~Ls~N-~l~~--lp~---~l~~L~~L~Ls~N~-L~~l--p~-l--~~~L~~L 185 (571)
T 3cvr_A 123 KHLDVDNNQLTMLPE-----LPALLEYINADNN-QLTM--LPE---LPTSLEVLSVRNNQ-LTFL--PE-L--PESLEAL 185 (571)
T ss_dssp CEEECCSSCCSCCCC-----CCTTCCEEECCSS-CCSC--CCC---CCTTCCEEECCSSC-CSCC--CC-C--CTTCCEE
T ss_pred CEEECCCCcCCCCCC-----cCccccEEeCCCC-ccCc--CCC---cCCCcCEEECCCCC-CCCc--ch-h--hCCCCEE
Confidence 999999998775221 5689999999985 4543 222 56899999999986 4332 11 1 1899999
Q ss_pred EccCCCCCCHHHHHHHH----hcCCCCCEEEccCCCCChhhHHhcccCCCCCEEeeCCCCccCHHHHHHHH
Q 012207 386 RMECCKLVSWEAFVLIG----QQCQYLEELDITENEVNDEGLKSISRCSKLSSLKLGICSNITDEGLKHVG 452 (468)
Q Consensus 386 ~l~~~~~~~~~~~~~~~----~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~l~~~~~~~~~ 452 (468)
+++++. ++. ++.+. ...+.|+.|++++|.++... ..+..+++|+.|++++| .++......+.
T Consensus 186 ~Ls~N~-L~~--lp~~~~~L~~~~~~L~~L~Ls~N~l~~lp-~~l~~l~~L~~L~L~~N-~l~~~~p~~l~ 251 (571)
T 3cvr_A 186 DVSTNL-LES--LPAVPVRNHHSEETEIFFRCRENRITHIP-ENILSLDPTCTIILEDN-PLSSRIRESLS 251 (571)
T ss_dssp ECCSSC-CSS--CCCCC--------CCEEEECCSSCCCCCC-GGGGGSCTTEEEECCSS-SCCHHHHHHHH
T ss_pred ECcCCC-CCc--hhhHHHhhhcccccceEEecCCCcceecC-HHHhcCCCCCEEEeeCC-cCCCcCHHHHH
Confidence 999854 442 11121 12233499999999998754 45667999999999999 88875444433
|
| >2o6s_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 1.50A {Eptatretus burgeri} | Back alignment and structure |
|---|
Probab=98.88 E-value=3e-10 Score=94.51 Aligned_cols=34 Identities=24% Similarity=0.166 Sum_probs=16.5
Q ss_pred CCccEeeecccCCCCCCccccccCCCCCeeeecC
Q 012207 202 QEIRTLDLSYLPITEKCLPPVVKLQYLEDLVLEG 235 (468)
Q Consensus 202 ~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~ 235 (468)
++|++|+++++.+.......+..+++|++|++++
T Consensus 28 ~~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~ 61 (208)
T 2o6s_A 28 AQTTYLDLETNSLKSLPNGVFDELTSLTQLYLGG 61 (208)
T ss_dssp TTCSEEECCSSCCCCCCTTTTTTCTTCSEEECCS
T ss_pred CCCcEEEcCCCccCcCChhhhcccccCcEEECCC
Confidence 3455555555544433333344455555555555
|
| >1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A* | Back alignment and structure |
|---|
Probab=98.87 E-value=2e-10 Score=110.23 Aligned_cols=179 Identities=17% Similarity=0.128 Sum_probs=101.6
Q ss_pred cCCCCcEEEccCCCccCHHHHHHHHcCCCCCeEeccCCccc-----------ChHhHHHHHhcCCCCcEEe-ccCCCCCC
Q 012207 123 NCRFLTEIDLSNGTEMGDAAAAAIAEAKNLERLWLARCKLI-----------TDLGIGRIAACCRKLKLLC-LKWCIRVT 190 (468)
Q Consensus 123 ~~~~L~~L~l~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~-----------~~~~~~~~~~~~~~L~~L~-l~~~~~~~ 190 (468)
.+++|+.|+++++ .++.. ...++.+++|+.|+++++... ...........+++|+.|+ +..+ .+.
T Consensus 347 ~~~~L~~L~Ls~n-~L~~L-p~~i~~l~~L~~L~l~~n~~l~~l~~ll~~~~~~~~~~~~l~~l~~L~~L~~l~~n-~~~ 423 (567)
T 1dce_A 347 TDEQLFRCELSVE-KSTVL-QSELESCKELQELEPENKWCLLTIILLMRALDPLLYEKETLQYFSTLKAVDPMRAA-YLD 423 (567)
T ss_dssp TTTTSSSCCCCHH-HHHHH-HHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHCTGGGHHHHHHHHHHHHHHCGGGHH-HHH
T ss_pred cCccceeccCChh-hHHhh-HHHHHHHHHHHHhccccchhhhhHHHHHHhcccccCCHHHHHHHHhcccCcchhhc-ccc
Confidence 5788888888876 45443 367888888888888654210 0011122223366777776 3321 111
Q ss_pred hH--------HHHHHHhhCCCccEeeecccCCCCCCccccccCCCCCeeeecCCCCCChHHHHHHHhcCCCCCEEEccCC
Q 012207 191 DL--------GVELVALKCQEIRTLDLSYLPITEKCLPPVVKLQYLEDLVLEGCHGIDDDGLASVEYSCKSLKALNLSKC 262 (468)
Q Consensus 191 ~~--------~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~~L~~L~l~~~ 262 (468)
+. .+..+ ....|+.|++++|.++. ++.+..+++|+.|+++++ .+... ...+.. +++|+.|+++++
T Consensus 424 ~L~~l~l~~n~i~~l--~~~~L~~L~Ls~n~l~~--lp~~~~l~~L~~L~Ls~N-~l~~l-p~~~~~-l~~L~~L~Ls~N 496 (567)
T 1dce_A 424 DLRSKFLLENSVLKM--EYADVRVLHLAHKDLTV--LCHLEQLLLVTHLDLSHN-RLRAL-PPALAA-LRCLEVLQASDN 496 (567)
T ss_dssp HHHHHHHHHHHHHHH--HHTTCSEEECTTSCCSS--CCCGGGGTTCCEEECCSS-CCCCC-CGGGGG-CTTCCEEECCSS
T ss_pred hhhhhhhhccccccc--CccCceEEEecCCCCCC--CcCccccccCcEeecCcc-ccccc-chhhhc-CCCCCEEECCCC
Confidence 11 11111 22468888888887764 334777888888888884 44422 123444 777888888776
Q ss_pred cccChhhHHHHHhcCCccceEeecCCCCCchhH-HHHhhcCCCCCeeEecCCcCC
Q 012207 263 QNISHVGLSSLIKGADYLQQLILAYSFWVSADL-SKCLHNFPMLQSIKFEDCPVA 316 (468)
Q Consensus 263 ~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~-~~~l~~~~~L~~L~l~~~~~~ 316 (468)
.... +. .+..+++|+.|+++++ .+.... +..+..+++|+.|++++|.+.
T Consensus 497 ~l~~---lp-~l~~l~~L~~L~Ls~N-~l~~~~~p~~l~~l~~L~~L~L~~N~l~ 546 (567)
T 1dce_A 497 ALEN---VD-GVANLPRLQELLLCNN-RLQQSAAIQPLVSCPRLVLLNLQGNSLC 546 (567)
T ss_dssp CCCC---CG-GGTTCSSCCEEECCSS-CCCSSSTTGGGGGCTTCCEEECTTSGGG
T ss_pred CCCC---Cc-ccCCCCCCcEEECCCC-CCCCCCCcHHHhcCCCCCEEEecCCcCC
Confidence 5322 11 2445566666666665 233222 455556666666666666544
|
| >2xot_A Amphoterin-induced protein 1; cell adhesion, neuronal protein, neurite growth regulation; HET: NAG BMA; 2.00A {Mus musculus} | Back alignment and structure |
|---|
Probab=98.86 E-value=1.6e-10 Score=105.04 Aligned_cols=161 Identities=14% Similarity=0.077 Sum_probs=104.3
Q ss_pred CCCCCEEEccCCcccChhhHHHHHh-cCCccceEeecCCCCCchhHHHHhhcCCCCCeeEecCCcCChhHHHHHHHhCCC
Q 012207 251 CKSLKALNLSKCQNISHVGLSSLIK-GADYLQQLILAYSFWVSADLSKCLHNFPMLQSIKFEDCPVARSGIKAIGNWHGS 329 (468)
Q Consensus 251 ~~~L~~L~l~~~~~~~~~~~~~~~~-~~~~L~~L~l~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~l~~~~~~ 329 (468)
.+.++.|+++++. +.... ...+. .+++|+.|+++++ .+.......+..+++|++|++++|.+.......+. .+++
T Consensus 38 ~~~l~~L~Ls~N~-l~~l~-~~~~~~~l~~L~~L~L~~N-~i~~i~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~-~l~~ 113 (361)
T 2xot_A 38 PSYTALLDLSHNN-LSRLR-AEWTPTRLTNLHSLLLSHN-HLNFISSEAFVPVPNLRYLDLSSNHLHTLDEFLFS-DLQA 113 (361)
T ss_dssp CTTCSEEECCSSC-CCEEC-TTSSSSCCTTCCEEECCSS-CCCEECTTTTTTCTTCCEEECCSSCCCEECTTTTT-TCTT
T ss_pred CCCCCEEECCCCC-CCccC-hhhhhhcccccCEEECCCC-cCCccChhhccCCCCCCEEECCCCcCCcCCHHHhC-CCcC
Confidence 3568899999875 33221 11123 6789999999887 45544455678889999999999987654333333 6789
Q ss_pred CCeEecccCCCCCHHHHHHHHHhCCCCCeEecCCCCCCCHHHHHHH--HhcCCcCCeEEccCCCCCCHHHHHHHHhcCCC
Q 012207 330 LKELSLSKCSGVTDEELSFVVQSHKELRKLDITCCRKITYASINSI--TKTCTSLTSLRMECCKLVSWEAFVLIGQQCQY 407 (468)
Q Consensus 330 L~~L~l~~~~~~~~~~l~~~~~~~~~L~~L~l~~~~~~~~~~~~~~--~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~ 407 (468)
|+.|+++++ .++.. ....+..+++|+.|++++|. ++......+ ...+++|+.|+++++ .++......+. .++.
T Consensus 114 L~~L~L~~N-~i~~~-~~~~~~~l~~L~~L~L~~N~-l~~l~~~~~~~~~~l~~L~~L~L~~N-~l~~l~~~~~~-~l~~ 188 (361)
T 2xot_A 114 LEVLLLYNN-HIVVV-DRNAFEDMAQLQKLYLSQNQ-ISRFPVELIKDGNKLPKLMLLDLSSN-KLKKLPLTDLQ-KLPA 188 (361)
T ss_dssp CCEEECCSS-CCCEE-CTTTTTTCTTCCEEECCSSC-CCSCCGGGTC----CTTCCEEECCSS-CCCCCCHHHHH-HSCH
T ss_pred CCEEECCCC-cccEE-CHHHhCCcccCCEEECCCCc-CCeeCHHHhcCcccCCcCCEEECCCC-CCCccCHHHhh-hccH
Confidence 999999984 45432 12235567899999999876 443221111 135789999999884 45544434443 5565
Q ss_pred --CCEEEccCCCCCh
Q 012207 408 --LEELDITENEVND 420 (468)
Q Consensus 408 --L~~L~l~~~~~~~ 420 (468)
|+.|++.+|.+..
T Consensus 189 ~~l~~l~l~~N~~~C 203 (361)
T 2xot_A 189 WVKNGLYLHNNPLEC 203 (361)
T ss_dssp HHHTTEECCSSCEEC
T ss_pred hhcceEEecCCCccC
Confidence 4889999987653
|
| >1a9n_A U2A', U2A'; complex (nuclear protein/RNA), RNA, snRNP, ribonucleoprotein, RNA binding protein/RNA complex; 2.38A {Homo sapiens} SCOP: c.10.2.4 | Back alignment and structure |
|---|
Probab=98.83 E-value=5.9e-10 Score=89.91 Aligned_cols=81 Identities=17% Similarity=0.082 Sum_probs=33.0
Q ss_pred CCCeeEecCCcCChhHHHHHHHhCCCCCeEecccCCCCCHHHHHHHHHhCCCCCeEecCCCCCCCHHHHHHHHhcCCcCC
Q 012207 304 MLQSIKFEDCPVARSGIKAIGNWHGSLKELSLSKCSGVTDEELSFVVQSHKELRKLDITCCRKITYASINSITKTCTSLT 383 (468)
Q Consensus 304 ~L~~L~l~~~~~~~~~~~~l~~~~~~L~~L~l~~~~~~~~~~l~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~ 383 (468)
+|+.|++++|.+.+. ..+. .+++|++|+++++ .++.. ...++..+++|+.|++++|. +++.........+++|+
T Consensus 43 ~L~~L~Ls~N~l~~~--~~l~-~l~~L~~L~Ls~N-~l~~~-~~~~~~~l~~L~~L~L~~N~-i~~~~~~~~l~~l~~L~ 116 (176)
T 1a9n_A 43 QFDAIDFSDNEIRKL--DGFP-LLRRLKTLLVNNN-RICRI-GEGLDQALPDLTELILTNNS-LVELGDLDPLASLKSLT 116 (176)
T ss_dssp CCSEEECCSSCCCEE--CCCC-CCSSCCEEECCSS-CCCEE-CSCHHHHCTTCCEEECCSCC-CCCGGGGGGGGGCTTCC
T ss_pred CCCEEECCCCCCCcc--cccc-cCCCCCEEECCCC-ccccc-CcchhhcCCCCCEEECCCCc-CCcchhhHhhhcCCCCC
Confidence 555555555554432 1111 3445555555542 23211 01122345555555555543 22211101122445555
Q ss_pred eEEccCC
Q 012207 384 SLRMECC 390 (468)
Q Consensus 384 ~L~l~~~ 390 (468)
.|+++++
T Consensus 117 ~L~l~~N 123 (176)
T 1a9n_A 117 YLCILRN 123 (176)
T ss_dssp EEECCSS
T ss_pred EEEecCC
Confidence 5555553
|
| >2v70_A SLIT-2, SLIT homolog 2 protein N-product; neurogenesis, glycoprotein, secreted, chemotaxis, LRR structural protein, differentiation; HET: NAG; 3.01A {Homo sapiens} | Back alignment and structure |
|---|
Probab=98.81 E-value=3.1e-10 Score=95.16 Aligned_cols=134 Identities=16% Similarity=0.161 Sum_probs=84.2
Q ss_pred CccceEeecCCCCCchh-HHHHhhcCCCCCeeEecCCcCChhHHHHHHHhCCCCCeEecccCCCCCHHHHHHHHHhCCCC
Q 012207 278 DYLQQLILAYSFWVSAD-LSKCLHNFPMLQSIKFEDCPVARSGIKAIGNWHGSLKELSLSKCSGVTDEELSFVVQSHKEL 356 (468)
Q Consensus 278 ~~L~~L~l~~~~~~~~~-~~~~l~~~~~L~~L~l~~~~~~~~~~~~l~~~~~~L~~L~l~~~~~~~~~~l~~~~~~~~~L 356 (468)
+.++.|+++++. +... ....+..+++|++|++++|.+.......+. .+++|++|+++++ .++.. ....+..+++|
T Consensus 32 ~~~~~L~L~~N~-l~~~~~~~~~~~l~~L~~L~L~~N~i~~i~~~~~~-~l~~L~~L~Ls~N-~l~~~-~~~~~~~l~~L 107 (220)
T 2v70_A 32 QYTAELRLNNNE-FTVLEATGIFKKLPQLRKINFSNNKITDIEEGAFE-GASGVNEILLTSN-RLENV-QHKMFKGLESL 107 (220)
T ss_dssp TTCSEEECCSSC-CCEECCCCCGGGCTTCCEEECCSSCCCEECTTTTT-TCTTCCEEECCSS-CCCCC-CGGGGTTCSSC
T ss_pred CCCCEEEcCCCc-CCccCchhhhccCCCCCEEECCCCcCCEECHHHhC-CCCCCCEEECCCC-ccCcc-CHhHhcCCcCC
Confidence 457788888773 3322 223467788888888888887654433333 6788888888874 44322 12234567888
Q ss_pred CeEecCCCCCCCHHHHHHHHhcCCcCCeEEccCCCCCCHHHHHHHHhcCCCCCEEEccCCCCC
Q 012207 357 RKLDITCCRKITYASINSITKTCTSLTSLRMECCKLVSWEAFVLIGQQCQYLEELDITENEVN 419 (468)
Q Consensus 357 ~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~ 419 (468)
++|++++|. ++.... ..+..+++|+.|+++++. ++......+. .+++|+.|++++|.+.
T Consensus 108 ~~L~Ls~N~-l~~~~~-~~~~~l~~L~~L~L~~N~-l~~~~~~~~~-~l~~L~~L~L~~N~l~ 166 (220)
T 2v70_A 108 KTLMLRSNR-ITCVGN-DSFIGLSSVRLLSLYDNQ-ITTVAPGAFD-TLHSLSTLNLLANPFN 166 (220)
T ss_dssp CEEECTTSC-CCCBCT-TSSTTCTTCSEEECTTSC-CCCBCTTTTT-TCTTCCEEECCSCCEE
T ss_pred CEEECCCCc-CCeECH-hHcCCCccCCEEECCCCc-CCEECHHHhc-CCCCCCEEEecCcCCc
Confidence 888888876 332211 112357888888888743 4432222233 6788888888887664
|
| >2v9t_B SLIT homolog 2 protein N-product; structural protein-receptor complex, developmental protein, domain, roundabout, chemotaxis, LRR domain; 1.70A {Homo sapiens} PDB: 2v9s_A | Back alignment and structure |
|---|
Probab=98.80 E-value=1.9e-09 Score=90.33 Aligned_cols=33 Identities=15% Similarity=0.059 Sum_probs=15.5
Q ss_pred CccEeeecccCCCCCCccccccCCCCCeeeecC
Q 012207 203 EIRTLDLSYLPITEKCLPPVVKLQYLEDLVLEG 235 (468)
Q Consensus 203 ~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~ 235 (468)
+++.|+++++.+.......+..+++|++|++++
T Consensus 33 ~l~~L~l~~n~i~~i~~~~~~~l~~L~~L~Ls~ 65 (220)
T 2v9t_B 33 TITEIRLEQNTIKVIPPGAFSPYKKLRRIDLSN 65 (220)
T ss_dssp TCCEEECCSSCCCEECTTSSTTCTTCCEEECCS
T ss_pred CCCEEECCCCcCCCcCHhHhhCCCCCCEEECCC
Confidence 455555555544433333344445555555554
|
| >1ds9_A Outer arm dynein; leucine-rich repeat, beta-BETA-alpha cylinder, flagella, contractIle protein; NMR {Chlamydomonas reinhardtii} SCOP: c.10.3.1 PDB: 1m9l_A | Back alignment and structure |
|---|
Probab=98.78 E-value=4.1e-10 Score=92.85 Aligned_cols=128 Identities=16% Similarity=0.178 Sum_probs=77.6
Q ss_pred HHhhcCCCCCeeEecCCcCChhHHHHHHHhCCCCCeEecccCCCCCHHHHHHHHHhCCCCCeEecCCCCCCCHHHHHHHH
Q 012207 297 KCLHNFPMLQSIKFEDCPVARSGIKAIGNWHGSLKELSLSKCSGVTDEELSFVVQSHKELRKLDITCCRKITYASINSIT 376 (468)
Q Consensus 297 ~~l~~~~~L~~L~l~~~~~~~~~~~~l~~~~~~L~~L~l~~~~~~~~~~l~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~ 376 (468)
..+..+++|++|++++|.+.... .+. .+++|+.|+++++ .++. ++.....+++|+.|++++|. ++.. .. .
T Consensus 42 ~~~~~l~~L~~L~ls~n~l~~l~--~~~-~l~~L~~L~l~~n-~l~~--l~~~~~~~~~L~~L~L~~N~-l~~l--~~-~ 111 (198)
T 1ds9_A 42 ATLSTLKACKHLALSTNNIEKIS--SLS-GMENLRILSLGRN-LIKK--IENLDAVADTLEELWISYNQ-IASL--SG-I 111 (198)
T ss_dssp HHHHHTTTCSEEECSEEEESCCC--CHH-HHTTCCEEEEEEE-EECS--CSSHHHHHHHCSEEEEEEEE-CCCH--HH-H
T ss_pred HHHhcCCCCCEEECCCCCCcccc--ccc-cCCCCCEEECCCC-Cccc--ccchhhcCCcCCEEECcCCc-CCcC--Cc-c
Confidence 35566677777777777655422 222 5577777777764 3331 33344455678888887775 4432 22 3
Q ss_pred hcCCcCCeEEccCCCCCCHH-HHHHHHhcCCCCCEEEccCCCCChhhH----------HhcccCCCCCEEe
Q 012207 377 KTCTSLTSLRMECCKLVSWE-AFVLIGQQCQYLEELDITENEVNDEGL----------KSISRCSKLSSLK 436 (468)
Q Consensus 377 ~~~~~L~~L~l~~~~~~~~~-~~~~~~~~~~~L~~L~l~~~~~~~~~~----------~~l~~~~~L~~L~ 436 (468)
..+++|+.|+++++. ++.. .+..+. .+++|+.|++++|.+++... ..+..+++|+.|+
T Consensus 112 ~~l~~L~~L~l~~N~-i~~~~~~~~l~-~l~~L~~L~l~~N~l~~~~~~~~~~~~~~~~~~~~l~~L~~Ld 180 (198)
T 1ds9_A 112 EKLVNLRVLYMSNNK-ITNWGEIDKLA-ALDKLEDLLLAGNPLYNDYKENNATSEYRIEVVKRLPNLKKLD 180 (198)
T ss_dssp HHHHHSSEEEESEEE-CCCHHHHHHHT-TTTTCSEEEECSCHHHHHHHTTTTHHHHHHHHHHHCSSCSEEC
T ss_pred ccCCCCCEEECCCCc-CCchhHHHHHh-cCCCCCEEEecCCccccccccccchHHHHHHHHHhCCCcEEEC
Confidence 356788888887754 4432 233444 77888888888887755422 1255678888776
|
| >3e6j_A Variable lymphocyte receptor diversity region; variable lymphocyte receptors, VLR, leucine-rich repeat, LRR adaptive immunity, immune system; HET: DR2; 1.67A {Petromyzon marinus} | Back alignment and structure |
|---|
Probab=98.75 E-value=5.5e-09 Score=88.12 Aligned_cols=59 Identities=19% Similarity=0.102 Sum_probs=29.1
Q ss_pred CCccEeeecccCCCCCCccccccCCCCCeeeecCCCCCChHHHHHHHhcCCCCCEEEccCC
Q 012207 202 QEIRTLDLSYLPITEKCLPPVVKLQYLEDLVLEGCHGIDDDGLASVEYSCKSLKALNLSKC 262 (468)
Q Consensus 202 ~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~~L~~L~l~~~ 262 (468)
++|+.|+++++.+.......+..+++|++|+++++ .+.......+.. +++|+.|+++++
T Consensus 40 ~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~N-~l~~i~~~~~~~-l~~L~~L~Ls~N 98 (229)
T 3e6j_A 40 TNAQILYLHDNQITKLEPGVFDSLINLKELYLGSN-QLGALPVGVFDS-LTQLTVLDLGTN 98 (229)
T ss_dssp TTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSS-CCCCCCTTTTTT-CTTCCEEECCSS
T ss_pred CCCCEEEcCCCccCccCHHHhhCccCCcEEECCCC-CCCCcChhhccc-CCCcCEEECCCC
Confidence 55666666666555444444555566666666653 232222111222 455555555544
|
| >3e6j_A Variable lymphocyte receptor diversity region; variable lymphocyte receptors, VLR, leucine-rich repeat, LRR adaptive immunity, immune system; HET: DR2; 1.67A {Petromyzon marinus} | Back alignment and structure |
|---|
Probab=98.73 E-value=4.6e-09 Score=88.60 Aligned_cols=111 Identities=15% Similarity=0.021 Sum_probs=51.8
Q ss_pred hCCCccEeeecccCCCCCCccccccCCCCCeeeecCCCCCChHHHHHHHhcCCCCCEEEccCCcccChhhHHHHHhcCCc
Q 012207 200 KCQEIRTLDLSYLPITEKCLPPVVKLQYLEDLVLEGCHGIDDDGLASVEYSCKSLKALNLSKCQNISHVGLSSLIKGADY 279 (468)
Q Consensus 200 ~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~ 279 (468)
.+++|++|+++++.+.......+..+++|++|+++++ .+.......+.. +++|+.|+++++... . +...+..+++
T Consensus 62 ~l~~L~~L~L~~N~l~~i~~~~~~~l~~L~~L~Ls~N-~l~~l~~~~~~~-l~~L~~L~Ls~N~l~-~--lp~~~~~l~~ 136 (229)
T 3e6j_A 62 SLINLKELYLGSNQLGALPVGVFDSLTQLTVLDLGTN-QLTVLPSAVFDR-LVHLKELFMCCNKLT-E--LPRGIERLTH 136 (229)
T ss_dssp TCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSS-CCCCCCTTTTTT-CTTCCEEECCSSCCC-S--CCTTGGGCTT
T ss_pred CccCCcEEECCCCCCCCcChhhcccCCCcCEEECCCC-cCCccChhHhCc-chhhCeEeccCCccc-c--cCcccccCCC
Confidence 4556666666666554333334455666666666663 333222111222 555666666554421 1 1111233445
Q ss_pred cceEeecCCCCCchhHHHHhhcCCCCCeeEecCCcCC
Q 012207 280 LQQLILAYSFWVSADLSKCLHNFPMLQSIKFEDCPVA 316 (468)
Q Consensus 280 L~~L~l~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~ 316 (468)
|+.|+++++ .+.......+..+++|+.|++.+|++.
T Consensus 137 L~~L~L~~N-~l~~~~~~~~~~l~~L~~L~l~~N~~~ 172 (229)
T 3e6j_A 137 LTHLALDQN-QLKSIPHGAFDRLSSLTHAYLFGNPWD 172 (229)
T ss_dssp CSEEECCSS-CCCCCCTTTTTTCTTCCEEECTTSCBC
T ss_pred CCEEECCCC-cCCccCHHHHhCCCCCCEEEeeCCCcc
Confidence 555555544 222222233445566666666666544
|
| >4fs7_A Uncharacterized protein; leucine-rich repeats, protein binding, extracellular protein structural genomics; HET: MSE; 1.19A {Bacteroides ovatus} | Back alignment and structure |
|---|
Probab=98.64 E-value=2.9e-10 Score=104.72 Aligned_cols=233 Identities=13% Similarity=0.135 Sum_probs=119.6
Q ss_pred hhCCCccEeeecccCCCCCCccccccCCCCCeeeecCCCCCChHHHHHHHhcCCCCCEEEccCCcccChhhHHHHHhcCC
Q 012207 199 LKCQEIRTLDLSYLPITEKCLPPVVKLQYLEDLVLEGCHGIDDDGLASVEYSCKSLKALNLSKCQNISHVGLSSLIKGAD 278 (468)
Q Consensus 199 ~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~ 278 (468)
..|++|+.+.+.... ....-..+..+.+|+.+.+... +......++.. +..|+.+.+........ .......
T Consensus 159 ~~c~~L~~i~l~~~~-~~I~~~~F~~c~~L~~i~l~~~--~~~I~~~~F~~-~~~L~~i~~~~~~~~i~----~~~~~~~ 230 (394)
T 4fs7_A 159 ATCESLEYVSLPDSM-ETLHNGLFSGCGKLKSIKLPRN--LKIIRDYCFAE-CILLENMEFPNSLYYLG----DFALSKT 230 (394)
T ss_dssp TTCTTCCEEECCTTC-CEECTTTTTTCTTCCBCCCCTT--CCEECTTTTTT-CTTCCBCCCCTTCCEEC----TTTTTTC
T ss_pred cccCCCcEEecCCcc-ceeccccccCCCCceEEEcCCC--ceEeCchhhcc-ccccceeecCCCceEee----hhhcccC
Confidence 366777777765431 1112223445666666666541 22222222333 66666665554321110 1122335
Q ss_pred ccceEeecCCCCCchhHHHHhhcCCCCCeeEecCCc--CChhHHHHHHHhCCCCCeEecccCCCCCHHHHHHHHHhCCCC
Q 012207 279 YLQQLILAYSFWVSADLSKCLHNFPMLQSIKFEDCP--VARSGIKAIGNWHGSLKELSLSKCSGVTDEELSFVVQSHKEL 356 (468)
Q Consensus 279 ~L~~L~l~~~~~~~~~~~~~l~~~~~L~~L~l~~~~--~~~~~~~~l~~~~~~L~~L~l~~~~~~~~~~l~~~~~~~~~L 356 (468)
+|+.+.+... ........+..+..|+.+.+..+. +....+ ..+..++.+..... .+.+. .+..+.+|
T Consensus 231 ~l~~i~ip~~--~~~i~~~~f~~~~~l~~~~~~~~~~~i~~~~F----~~~~~l~~~~~~~~-~i~~~----~F~~~~~L 299 (394)
T 4fs7_A 231 GVKNIIIPDS--FTELGKSVFYGCTDLESISIQNNKLRIGGSLF----YNCSGLKKVIYGSV-IVPEK----TFYGCSSL 299 (394)
T ss_dssp CCCEEEECTT--CCEECSSTTTTCSSCCEEEECCTTCEECSCTT----TTCTTCCEEEECSS-EECTT----TTTTCTTC
T ss_pred CCceEEECCC--ceecccccccccccceeEEcCCCcceeecccc----ccccccceeccCce-eeccc----cccccccc
Confidence 5666665432 111112234456677777766542 111111 14566666665542 22211 13456788
Q ss_pred CeEecCCCCCCCHHHHHHHHhcCCcCCeEEccCCCCCCHHHHHHHHhcCCCCCEEEccCCCCChhhHHhcccCCCCCEEe
Q 012207 357 RKLDITCCRKITYASINSITKTCTSLTSLRMECCKLVSWEAFVLIGQQCQYLEELDITENEVNDEGLKSISRCSKLSSLK 436 (468)
Q Consensus 357 ~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~ 436 (468)
+.+.+... ++..+-. .+.+|.+|+.+++.. .++.-+-.++. +|++|+.+.+..+ ++..+..++..|++|+.+.
T Consensus 300 ~~i~l~~~--i~~I~~~-aF~~c~~L~~i~lp~--~v~~I~~~aF~-~c~~L~~i~lp~~-l~~I~~~aF~~C~~L~~i~ 372 (394)
T 4fs7_A 300 TEVKLLDS--VKFIGEE-AFESCTSLVSIDLPY--LVEEIGKRSFR-GCTSLSNINFPLS-LRKIGANAFQGCINLKKVE 372 (394)
T ss_dssp CEEEECTT--CCEECTT-TTTTCTTCCEECCCT--TCCEECTTTTT-TCTTCCEECCCTT-CCEECTTTBTTCTTCCEEE
T ss_pred cccccccc--cceechh-hhcCCCCCCEEEeCC--cccEEhHHhcc-CCCCCCEEEECcc-ccEehHHHhhCCCCCCEEE
Confidence 88877542 2211111 123678888888853 23322222333 7889999998765 6666667788899999999
Q ss_pred eCCCCccCHHHHHHHHhcCcccCee
Q 012207 437 LGICSNITDEGLKHVGSTCSMLKEL 461 (468)
Q Consensus 437 l~~~~~l~~~~~~~~~~~~~~L~~L 461 (468)
+..+ ++. +..-...|++|+.+
T Consensus 373 lp~~--~~~--~~~~F~~c~~L~~I 393 (394)
T 4fs7_A 373 LPKR--LEQ--YRYDFEDTTKFKWI 393 (394)
T ss_dssp EEGG--GGG--GGGGBCTTCEEEEE
T ss_pred ECCC--CEE--hhheecCCCCCcEE
Confidence 8754 332 22234467887765
|
| >2wfh_A SLIT homolog 2 protein C-product; developmental protein, neurogenesis, splicing, glycoprotein, leucine-rich repeat, disulfide bond, differentiation; 1.80A {Homo sapiens} | Back alignment and structure |
|---|
Probab=98.64 E-value=5.4e-09 Score=85.45 Aligned_cols=108 Identities=19% Similarity=0.144 Sum_probs=73.6
Q ss_pred CCCCeEecccCCCCCHHHHHHHHHhCCCCCeEecCCCCCCCHHHHHHHHhcCCcCCeEEccCCCCCCHHHHHHHHhcCCC
Q 012207 328 GSLKELSLSKCSGVTDEELSFVVQSHKELRKLDITCCRKITYASINSITKTCTSLTSLRMECCKLVSWEAFVLIGQQCQY 407 (468)
Q Consensus 328 ~~L~~L~l~~~~~~~~~~l~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~ 407 (468)
++|++|+++++ .++. ++..+..+++|+.|++++|. ++.... ..+..+++|++|+++++. ++......+. .+++
T Consensus 31 ~~l~~L~L~~n-~i~~--ip~~~~~l~~L~~L~Ls~N~-i~~i~~-~~f~~l~~L~~L~Ls~N~-l~~i~~~~f~-~l~~ 103 (193)
T 2wfh_A 31 RDVTELYLDGN-QFTL--VPKELSNYKHLTLIDLSNNR-ISTLSN-QSFSNMTQLLTLILSYNR-LRCIPPRTFD-GLKS 103 (193)
T ss_dssp TTCCEEECCSS-CCCS--CCGGGGGCTTCCEEECCSSC-CCCCCT-TTTTTCTTCCEEECCSSC-CCBCCTTTTT-TCTT
T ss_pred CCCCEEECCCC-cCch--hHHHhhcccCCCEEECCCCc-CCEeCH-hHccCCCCCCEEECCCCc-cCEeCHHHhC-CCCC
Confidence 68999999884 4542 33446678899999998876 432211 122467888888888743 5433222233 6788
Q ss_pred CCEEEccCCCCChhhHHhcccCCCCCEEeeCCCCc
Q 012207 408 LEELDITENEVNDEGLKSISRCSKLSSLKLGICSN 442 (468)
Q Consensus 408 L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~ 442 (468)
|+.|++++|.++......+..+++|+.|++++|+-
T Consensus 104 L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~~ 138 (193)
T 2wfh_A 104 LRLLSLHGNDISVVPEGAFNDLSALSHLAIGANPL 138 (193)
T ss_dssp CCEEECCSSCCCBCCTTTTTTCTTCCEEECCSSCE
T ss_pred CCEEECCCCCCCeeChhhhhcCccccEEEeCCCCe
Confidence 88888888888876655677788888888888843
|
| >1w8a_A SLIT protein; signaling protein, secreted protein, AXON guidance, leucine-rich repeat glycoprotein, EGF-like domain, signal protein; 2.8A {Drosophila melanogaster} SCOP: c.10.2.7 | Back alignment and structure |
|---|
Probab=98.60 E-value=2.4e-09 Score=87.65 Aligned_cols=129 Identities=13% Similarity=0.080 Sum_probs=83.7
Q ss_pred CeeEecCCcCChhHHHHHHHhCCCCCeEecccCCCCCHHHHHHHHHhCCCCCeEecCCCCCCCHHHHHHHHhcCCcCCeE
Q 012207 306 QSIKFEDCPVARSGIKAIGNWHGSLKELSLSKCSGVTDEELSFVVQSHKELRKLDITCCRKITYASINSITKTCTSLTSL 385 (468)
Q Consensus 306 ~~L~l~~~~~~~~~~~~l~~~~~~L~~L~l~~~~~~~~~~l~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L 385 (468)
+.++++++.+.... .. ..+++++|+++++ .++.......+..+++|++|++++|. ++... ...+..+++|++|
T Consensus 11 ~~l~~s~~~l~~ip-~~---~~~~l~~L~l~~n-~i~~~~~~~~~~~l~~L~~L~Ls~N~-l~~~~-~~~~~~l~~L~~L 83 (192)
T 1w8a_A 11 TTVDCTGRGLKEIP-RD---IPLHTTELLLNDN-ELGRISSDGLFGRLPHLVKLELKRNQ-LTGIE-PNAFEGASHIQEL 83 (192)
T ss_dssp TEEECTTSCCSSCC-SC---CCTTCSEEECCSC-CCCSBCCSCSGGGCTTCCEEECCSSC-CCCBC-TTTTTTCTTCCEE
T ss_pred CEEEcCCCCcCcCc-cC---CCCCCCEEECCCC-cCCccCCccccccCCCCCEEECCCCC-CCCcC-HhHcCCcccCCEE
Confidence 45555555543211 11 2348999999984 45432111135678899999999876 43221 1223467899999
Q ss_pred EccCCCCCCHHHHHHHHhcCCCCCEEEccCCCCChhhHHhcccCCCCCEEeeCCCCccC
Q 012207 386 RMECCKLVSWEAFVLIGQQCQYLEELDITENEVNDEGLKSISRCSKLSSLKLGICSNIT 444 (468)
Q Consensus 386 ~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~l~ 444 (468)
+++++. ++......+. .+++|++|++++|.++......+..+++|+.|++++| .++
T Consensus 84 ~Ls~N~-l~~~~~~~~~-~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N-~l~ 139 (192)
T 1w8a_A 84 QLGENK-IKEISNKMFL-GLHQLKTLNLYDNQISCVMPGSFEHLNSLTSLNLASN-PFN 139 (192)
T ss_dssp ECCSCC-CCEECSSSST-TCTTCCEEECCSSCCCEECTTSSTTCTTCCEEECTTC-CBC
T ss_pred ECCCCc-CCccCHHHhc-CCCCCCEEECCCCcCCeeCHHHhhcCCCCCEEEeCCC-Ccc
Confidence 998843 5533222233 6789999999999888876677778889999999998 443
|
| >1pgv_A TMD-1, tropomodulin TMD-1; structural genomics, PSI, protein structure initiative, southeast collaboratory for structural genomics secsg; 1.80A {Caenorhabditis elegans} SCOP: c.10.1.1 | Back alignment and structure |
|---|
Probab=98.55 E-value=2.8e-06 Score=68.09 Aligned_cols=124 Identities=15% Similarity=0.246 Sum_probs=87.8
Q ss_pred hHHHHHHHhCCCCCeEecccCCCCCHHHHHHHHHhC---CCCCeEecCCCCCCCHHHHHHHH---hcCCcCCeEEccCCC
Q 012207 318 SGIKAIGNWHGSLKELSLSKCSGVTDEELSFVVQSH---KELRKLDITCCRKITYASINSIT---KTCTSLTSLRMECCK 391 (468)
Q Consensus 318 ~~~~~l~~~~~~L~~L~l~~~~~~~~~~l~~~~~~~---~~L~~L~l~~~~~~~~~~~~~~~---~~~~~L~~L~l~~~~ 391 (468)
+.+..+...-+.|++|+|++++.+.+.+...+...+ +.|+.|++++|. +++.+...++ ..-+.|++|+|+. +
T Consensus 31 ~~l~~ll~~n~~L~~L~L~~nn~igd~ga~~la~aL~~N~~L~~L~L~~n~-igd~ga~alA~aL~~N~tL~~L~L~~-N 108 (197)
T 1pgv_A 31 SCINRLREDDTDLKEVNINNMKRVSKERIRSLIEAACNSKHIEKFSLANTA-ISDSEARGLIELIETSPSLRVLNVES-N 108 (197)
T ss_dssp HHHHHHHTTCSSCCEEECTTCCSSCHHHHHHHHHHHTTCSCCCEEECTTSC-CBHHHHTTHHHHHHHCSSCCEEECCS-S
T ss_pred HHHHHHHhcCCCccEEECCCCCCCCHHHHHHHHHHHhhCCCcCEEEccCCC-CChHHHHHHHHHHhcCCccCeEecCC-C
Confidence 445555556678999999875578888766665544 688999998876 7777755444 3457889999987 5
Q ss_pred CCCHHHHHHHHhcC---CCCCEEEccCC---CCChhhHHhcc----cCCCCCEEeeCCCCccC
Q 012207 392 LVSWEAFVLIGQQC---QYLEELDITEN---EVNDEGLKSIS----RCSKLSSLKLGICSNIT 444 (468)
Q Consensus 392 ~~~~~~~~~~~~~~---~~L~~L~l~~~---~~~~~~~~~l~----~~~~L~~L~l~~~~~l~ 444 (468)
.+++.+...+++.+ +.|++|+++++ .+++.+...++ .-++|+.|+++.+ .+.
T Consensus 109 ~Ig~~Ga~ala~aL~~N~tL~~L~L~n~~~~~ig~~g~~~ia~aL~~N~tL~~L~l~~~-~~g 170 (197)
T 1pgv_A 109 FLTPELLARLLRSTLVTQSIVEFKADNQRQSVLGNQVEMDMMMAIEENESLLRVGISFA-SME 170 (197)
T ss_dssp BCCHHHHHHHHHHTTTTCCCSEEECCCCSSCCCCHHHHHHHHHHHHHCSSCCEEECCCC-CHH
T ss_pred cCCHHHHHHHHHHHhhCCceeEEECCCCcCcCcCHHHHHHHHHHHHhCCCcCeEeccCC-Ccc
Confidence 58888887776543 46888888764 56776554443 5678888888876 444
|
| >1w8a_A SLIT protein; signaling protein, secreted protein, AXON guidance, leucine-rich repeat glycoprotein, EGF-like domain, signal protein; 2.8A {Drosophila melanogaster} SCOP: c.10.2.7 | Back alignment and structure |
|---|
Probab=98.50 E-value=6.1e-09 Score=85.18 Aligned_cols=130 Identities=12% Similarity=0.064 Sum_probs=80.7
Q ss_pred ceEeecCCCCCchhHHHHhhcCCCCCeeEecCCcCChhHHHHHHHhCCCCCeEecccCCCCCHHHHHHHHHhCCCCCeEe
Q 012207 281 QQLILAYSFWVSADLSKCLHNFPMLQSIKFEDCPVARSGIKAIGNWHGSLKELSLSKCSGVTDEELSFVVQSHKELRKLD 360 (468)
Q Consensus 281 ~~L~l~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~l~~~~~~L~~L~l~~~~~~~~~~l~~~~~~~~~L~~L~ 360 (468)
+.++++++. +. .++..+ .++|++|+++++.+...........+++|++|+++++ .++.. .+..+..+++|+.|+
T Consensus 11 ~~l~~s~~~-l~-~ip~~~--~~~l~~L~l~~n~i~~~~~~~~~~~l~~L~~L~Ls~N-~l~~~-~~~~~~~l~~L~~L~ 84 (192)
T 1w8a_A 11 TTVDCTGRG-LK-EIPRDI--PLHTTELLLNDNELGRISSDGLFGRLPHLVKLELKRN-QLTGI-EPNAFEGASHIQELQ 84 (192)
T ss_dssp TEEECTTSC-CS-SCCSCC--CTTCSEEECCSCCCCSBCCSCSGGGCTTCCEEECCSS-CCCCB-CTTTTTTCTTCCEEE
T ss_pred CEEEcCCCC-cC-cCccCC--CCCCCEEECCCCcCCccCCccccccCCCCCEEECCCC-CCCCc-CHhHcCCcccCCEEE
Confidence 567776652 21 222211 2388999999988765443322236789999999884 44432 133355678999999
Q ss_pred cCCCCCCCHHHHHHHHhcCCcCCeEEccCCCCCCHHHHHHHHhcCCCCCEEEccCCCCCh
Q 012207 361 ITCCRKITYASINSITKTCTSLTSLRMECCKLVSWEAFVLIGQQCQYLEELDITENEVND 420 (468)
Q Consensus 361 l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~ 420 (468)
+++|. ++.... ..+..+++|++|+++++. ++......+. .+++|+.|++++|.+..
T Consensus 85 Ls~N~-l~~~~~-~~~~~l~~L~~L~L~~N~-l~~~~~~~~~-~l~~L~~L~L~~N~l~c 140 (192)
T 1w8a_A 85 LGENK-IKEISN-KMFLGLHQLKTLNLYDNQ-ISCVMPGSFE-HLNSLTSLNLASNPFNC 140 (192)
T ss_dssp CCSCC-CCEECS-SSSTTCTTCCEEECCSSC-CCEECTTSST-TCTTCCEEECTTCCBCC
T ss_pred CCCCc-CCccCH-HHhcCCCCCCEEECCCCc-CCeeCHHHhh-cCCCCCEEEeCCCCccC
Confidence 99876 432221 112357899999998843 5433222233 67889999999987663
|
| >2o6r_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 2.30A {Eptatretus burgeri} | Back alignment and structure |
|---|
Probab=98.49 E-value=1.5e-08 Score=81.72 Aligned_cols=129 Identities=16% Similarity=0.105 Sum_probs=83.6
Q ss_pred CCeeEecCCcCChhHHHHHHHhCCCCCeEecccCCCCCHHHHHHHHHhCCCCCeEecCCCCCCCHHHHHHHHhcCCcCCe
Q 012207 305 LQSIKFEDCPVARSGIKAIGNWHGSLKELSLSKCSGVTDEELSFVVQSHKELRKLDITCCRKITYASINSITKTCTSLTS 384 (468)
Q Consensus 305 L~~L~l~~~~~~~~~~~~l~~~~~~L~~L~l~~~~~~~~~~l~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~ 384 (468)
.+.+++.++.+..... . ..++|++|+++++ .++.. ....+..+++|++|++++|. ++... ......+++|+.
T Consensus 9 ~~~l~~~~~~l~~~p~-~---~~~~l~~L~l~~n-~l~~~-~~~~~~~l~~L~~L~l~~n~-l~~~~-~~~~~~l~~L~~ 80 (177)
T 2o6r_A 9 GTEIRCNSKGLTSVPT-G---IPSSATRLELESN-KLQSL-PHGVFDKLTQLTKLSLSQNQ-IQSLP-DGVFDKLTKLTI 80 (177)
T ss_dssp TTEEECCSSCCSSCCT-T---CCTTCSEEECCSS-CCCCC-CTTTTTTCTTCSEEECCSSC-CCCCC-TTTTTTCTTCCE
T ss_pred CCEEEecCCCCccCCC-C---CCCCCcEEEeCCC-cccEe-CHHHhcCcccccEEECCCCc-ceEeC-hhHccCCCccCE
Confidence 3455555555443211 1 2468999999984 44421 12234567899999999876 44221 112246889999
Q ss_pred EEccCCCCCCHHHHHHHHhcCCCCCEEEccCCCCChhhHHhcccCCCCCEEeeCCCCccC
Q 012207 385 LRMECCKLVSWEAFVLIGQQCQYLEELDITENEVNDEGLKSISRCSKLSSLKLGICSNIT 444 (468)
Q Consensus 385 L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~l~ 444 (468)
|+++++. ++......+ ..+++|+.|++++|.++......+..+++|+.|++++| .++
T Consensus 81 L~l~~N~-l~~~~~~~~-~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~l~~N-~~~ 137 (177)
T 2o6r_A 81 LYLHENK-LQSLPNGVF-DKLTQLKELALDTNQLKSVPDGIFDRLTSLQKIWLHTN-PWD 137 (177)
T ss_dssp EECCSSC-CCCCCTTTT-TTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSS-CBC
T ss_pred EECCCCC-ccccCHHHh-hCCcccCEEECcCCcceEeCHHHhcCCcccCEEEecCC-Cee
Confidence 9998854 543222222 36789999999999888766555677899999999999 544
|
| >1pgv_A TMD-1, tropomodulin TMD-1; structural genomics, PSI, protein structure initiative, southeast collaboratory for structural genomics secsg; 1.80A {Caenorhabditis elegans} SCOP: c.10.1.1 | Back alignment and structure |
|---|
Probab=98.48 E-value=2.5e-06 Score=68.37 Aligned_cols=126 Identities=11% Similarity=0.208 Sum_probs=87.2
Q ss_pred hhHHHHhhcCCCCCeeEecCC-cCChhHHHHHHHh---CCCCCeEecccCCCCCHHHHHHH---HHhCCCCCeEecCCCC
Q 012207 293 ADLSKCLHNFPMLQSIKFEDC-PVARSGIKAIGNW---HGSLKELSLSKCSGVTDEELSFV---VQSHKELRKLDITCCR 365 (468)
Q Consensus 293 ~~~~~~l~~~~~L~~L~l~~~-~~~~~~~~~l~~~---~~~L~~L~l~~~~~~~~~~l~~~---~~~~~~L~~L~l~~~~ 365 (468)
..+...+.+-+.|++|+++++ .+.+.+...++.. -..|++|+|++| .+.+.+...+ +..-+.|++|+|++|.
T Consensus 31 ~~l~~ll~~n~~L~~L~L~~nn~igd~ga~~la~aL~~N~~L~~L~L~~n-~igd~ga~alA~aL~~N~tL~~L~L~~N~ 109 (197)
T 1pgv_A 31 SCINRLREDDTDLKEVNINNMKRVSKERIRSLIEAACNSKHIEKFSLANT-AISDSEARGLIELIETSPSLRVLNVESNF 109 (197)
T ss_dssp HHHHHHHTTCSSCCEEECTTCCSSCHHHHHHHHHHHTTCSCCCEEECTTS-CCBHHHHTTHHHHHHHCSSCCEEECCSSB
T ss_pred HHHHHHHhcCCCccEEECCCCCCCCHHHHHHHHHHHhhCCCcCEEEccCC-CCChHHHHHHHHHHhcCCccCeEecCCCc
Confidence 345555667788888888885 7888877776653 457888888884 6777764443 3445788888888876
Q ss_pred CCCHHHHHHHHhc---CCcCCeEEccCCC--CCCHHHHHHHH---hcCCCCCEEEccCCCCCh
Q 012207 366 KITYASINSITKT---CTSLTSLRMECCK--LVSWEAFVLIG---QQCQYLEELDITENEVND 420 (468)
Q Consensus 366 ~~~~~~~~~~~~~---~~~L~~L~l~~~~--~~~~~~~~~~~---~~~~~L~~L~l~~~~~~~ 420 (468)
+++.+...++.. -..|++|+++++. .+++.+...+. +.-+.|++|+++.+.+..
T Consensus 110 -Ig~~Ga~ala~aL~~N~tL~~L~L~n~~~~~ig~~g~~~ia~aL~~N~tL~~L~l~~~~~g~ 171 (197)
T 1pgv_A 110 -LTPELLARLLRSTLVTQSIVEFKADNQRQSVLGNQVEMDMMMAIEENESLLRVGISFASMEA 171 (197)
T ss_dssp -CCHHHHHHHHHHTTTTCCCSEEECCCCSSCCCCHHHHHHHHHHHHHCSSCCEEECCCCCHHH
T ss_pred -CCHHHHHHHHHHHhhCCceeEEECCCCcCcCcCHHHHHHHHHHHHhCCCcCeEeccCCCccH
Confidence 888887776654 3578888887642 46766544333 355778888887765443
|
| >4b8c_D Glucose-repressible alcohol dehydrogenase transcr effector; hydrolase-cell cycle complex; 3.41A {Saccharomyces cerevisiae S288C} | Back alignment and structure |
|---|
Probab=98.42 E-value=2.5e-08 Score=98.86 Aligned_cols=110 Identities=15% Similarity=0.107 Sum_probs=77.4
Q ss_pred hCCCCCeEecccCCCCCHHHHHHHHHhCCCCCeEecCCCCCCCHHHHHHHHhcCCcCCeEEccCCCCCCHHHHHHHHhcC
Q 012207 326 WHGSLKELSLSKCSGVTDEELSFVVQSHKELRKLDITCCRKITYASINSITKTCTSLTSLRMECCKLVSWEAFVLIGQQC 405 (468)
Q Consensus 326 ~~~~L~~L~l~~~~~~~~~~l~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~ 405 (468)
.+++|+.|+|+++. +.. ++.-+..+++|++|+|++|. ++ .+...+..+++|+.|+|+++. ++ .+......+
T Consensus 222 ~l~~L~~L~Ls~n~-l~~--l~~~~~~l~~L~~L~Ls~N~-l~--~lp~~~~~l~~L~~L~Ls~N~-l~--~lp~~~~~l 292 (727)
T 4b8c_D 222 DDQLWHALDLSNLQ-IFN--ISANIFKYDFLTRLYLNGNS-LT--ELPAEIKNLSNLRVLDLSHNR-LT--SLPAELGSC 292 (727)
T ss_dssp CCCCCCEEECTTSC-CSC--CCGGGGGCCSCSCCBCTTSC-CS--CCCGGGGGGTTCCEEECTTSC-CS--SCCSSGGGG
T ss_pred cCCCCcEEECCCCC-CCC--CChhhcCCCCCCEEEeeCCc-Cc--ccChhhhCCCCCCEEeCcCCc-CC--ccChhhcCC
Confidence 67889999998853 331 23223478899999999886 44 222333578999999998854 54 222222378
Q ss_pred CCCCEEEccCCCCChhhHHhcccCCCCCEEeeCCCCccCHH
Q 012207 406 QYLEELDITENEVNDEGLKSISRCSKLSSLKLGICSNITDE 446 (468)
Q Consensus 406 ~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~l~~~ 446 (468)
++|+.|+|++|.++... ..+..+++|+.|+|++| .++..
T Consensus 293 ~~L~~L~L~~N~l~~lp-~~~~~l~~L~~L~L~~N-~l~~~ 331 (727)
T 4b8c_D 293 FQLKYFYFFDNMVTTLP-WEFGNLCNLQFLGVEGN-PLEKQ 331 (727)
T ss_dssp TTCSEEECCSSCCCCCC-SSTTSCTTCCCEECTTS-CCCSH
T ss_pred CCCCEEECCCCCCCccC-hhhhcCCCccEEeCCCC-ccCCC
Confidence 89999999999887543 44778899999999999 77753
|
| >2wfh_A SLIT homolog 2 protein C-product; developmental protein, neurogenesis, splicing, glycoprotein, leucine-rich repeat, disulfide bond, differentiation; 1.80A {Homo sapiens} | Back alignment and structure |
|---|
Probab=98.42 E-value=4.3e-08 Score=80.04 Aligned_cols=109 Identities=14% Similarity=0.071 Sum_probs=64.4
Q ss_pred CCCCeeEecCCcCChhHHHHHHHhCCCCCeEecccCCCCCHHHHHHHHHhCCCCCeEecCCCCCCCHHHHHHHHhcCCcC
Q 012207 303 PMLQSIKFEDCPVARSGIKAIGNWHGSLKELSLSKCSGVTDEELSFVVQSHKELRKLDITCCRKITYASINSITKTCTSL 382 (468)
Q Consensus 303 ~~L~~L~l~~~~~~~~~~~~l~~~~~~L~~L~l~~~~~~~~~~l~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L 382 (468)
++|++|+++++.+.... ..+ ..+++|+.|+++++ .++.. ....+..+++|++|++++|. ++..... .+..+++|
T Consensus 31 ~~l~~L~L~~n~i~~ip-~~~-~~l~~L~~L~Ls~N-~i~~i-~~~~f~~l~~L~~L~Ls~N~-l~~i~~~-~f~~l~~L 104 (193)
T 2wfh_A 31 RDVTELYLDGNQFTLVP-KEL-SNYKHLTLIDLSNN-RISTL-SNQSFSNMTQLLTLILSYNR-LRCIPPR-TFDGLKSL 104 (193)
T ss_dssp TTCCEEECCSSCCCSCC-GGG-GGCTTCCEEECCSS-CCCCC-CTTTTTTCTTCCEEECCSSC-CCBCCTT-TTTTCTTC
T ss_pred CCCCEEECCCCcCchhH-HHh-hcccCCCEEECCCC-cCCEe-CHhHccCCCCCCEEECCCCc-cCEeCHH-HhCCCCCC
Confidence 47888888888766322 222 26678888888774 44421 11224566788888888765 3322211 12357788
Q ss_pred CeEEccCCCCCCHHHHHHHHhcCCCCCEEEccCCCCC
Q 012207 383 TSLRMECCKLVSWEAFVLIGQQCQYLEELDITENEVN 419 (468)
Q Consensus 383 ~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~ 419 (468)
+.|+++++. ++......+ ..+++|+.|++++|.+.
T Consensus 105 ~~L~L~~N~-l~~~~~~~~-~~l~~L~~L~L~~N~~~ 139 (193)
T 2wfh_A 105 RLLSLHGND-ISVVPEGAF-NDLSALSHLAIGANPLY 139 (193)
T ss_dssp CEEECCSSC-CCBCCTTTT-TTCTTCCEEECCSSCEE
T ss_pred CEEECCCCC-CCeeChhhh-hcCccccEEEeCCCCee
Confidence 888887743 442221122 26778888888887553
|
| >4b8c_D Glucose-repressible alcohol dehydrogenase transcr effector; hydrolase-cell cycle complex; 3.41A {Saccharomyces cerevisiae S288C} | Back alignment and structure |
|---|
Probab=98.34 E-value=3.1e-08 Score=98.22 Aligned_cols=138 Identities=17% Similarity=0.092 Sum_probs=91.6
Q ss_pred HHHHhhcCCCCCeeEecCCcCChhHHHHHHHhCCCCCeEecccCCCCCHHHHHHHHHhCCCCCeEecCCCCCCCHHHHHH
Q 012207 295 LSKCLHNFPMLQSIKFEDCPVARSGIKAIGNWHGSLKELSLSKCSGVTDEELSFVVQSHKELRKLDITCCRKITYASINS 374 (468)
Q Consensus 295 ~~~~l~~~~~L~~L~l~~~~~~~~~~~~l~~~~~~L~~L~l~~~~~~~~~~l~~~~~~~~~L~~L~l~~~~~~~~~~~~~ 374 (468)
....+..++.|+.|+|++|.+... ...+. .+++|++|+|+++ .++ .++..+..+++|+.|+|++|. ++ .+..
T Consensus 216 ~~~~~~~l~~L~~L~Ls~n~l~~l-~~~~~-~l~~L~~L~Ls~N-~l~--~lp~~~~~l~~L~~L~Ls~N~-l~--~lp~ 287 (727)
T 4b8c_D 216 PKDSKYDDQLWHALDLSNLQIFNI-SANIF-KYDFLTRLYLNGN-SLT--ELPAEIKNLSNLRVLDLSHNR-LT--SLPA 287 (727)
T ss_dssp ------CCCCCCEEECTTSCCSCC-CGGGG-GCCSCSCCBCTTS-CCS--CCCGGGGGGTTCCEEECTTSC-CS--SCCS
T ss_pred ChhhhccCCCCcEEECCCCCCCCC-Chhhc-CCCCCCEEEeeCC-cCc--ccChhhhCCCCCCEEeCcCCc-CC--ccCh
Confidence 345577889999999999987632 22233 6899999999985 555 245556788999999999987 44 2233
Q ss_pred HHhcCCcCCeEEccCCCCCCHHHHHHHHhcCCCCCEEEccCCCCChhhHHhcccCC-CCCEEeeCCCCccC
Q 012207 375 ITKTCTSLTSLRMECCKLVSWEAFVLIGQQCQYLEELDITENEVNDEGLKSISRCS-KLSSLKLGICSNIT 444 (468)
Q Consensus 375 ~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~-~L~~L~l~~~~~l~ 444 (468)
.+..+++|++|+|++|. ++. +......+++|+.|+|++|.++......+.... .+..+++.+| .++
T Consensus 288 ~~~~l~~L~~L~L~~N~-l~~--lp~~~~~l~~L~~L~L~~N~l~~~~p~~~~~~~~~~~~l~l~~N-~l~ 354 (727)
T 4b8c_D 288 ELGSCFQLKYFYFFDNM-VTT--LPWEFGNLCNLQFLGVEGNPLEKQFLKILTEKSVTGLIFYLRDN-RPE 354 (727)
T ss_dssp SGGGGTTCSEEECCSSC-CCC--CCSSTTSCTTCCCEECTTSCCCSHHHHHHHHHHHHHHHHHHHHC-CCC
T ss_pred hhcCCCCCCEEECCCCC-CCc--cChhhhcCCCccEEeCCCCccCCCChHHHhhcchhhhHHhhccC-ccc
Confidence 34578999999999864 542 221133789999999999999987666654321 1123556666 443
|
| >4fdw_A Leucine rich hypothetical protein; putative cell surface protein, BIG3 domain, LRR domain, STRU genomics; 2.05A {Bacteroides ovatus} PDB: 4fd0_A | Back alignment and structure |
|---|
Probab=98.34 E-value=6.8e-08 Score=88.45 Aligned_cols=268 Identities=13% Similarity=0.162 Sum_probs=121.9
Q ss_pred cCCCCcEEEccCCCccCHHHHHHHHcCCCCCeEeccCCcccChHhHHHHHhcCCCCcEEeccCCCCCChHHHHHHHhhCC
Q 012207 123 NCRFLTEIDLSNGTEMGDAAAAAIAEAKNLERLWLARCKLITDLGIGRIAACCRKLKLLCLKWCIRVTDLGVELVALKCQ 202 (468)
Q Consensus 123 ~~~~L~~L~l~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~ 202 (468)
.+..++.+.+... +......++..+ +|+.+.+... +...+-.++.. + +|+.+.+.. .+...+.. .+..|+
T Consensus 111 ~~~~l~~i~ip~~--i~~I~~~aF~~~-~L~~i~l~~~--i~~I~~~aF~~-~-~L~~i~lp~--~l~~I~~~-aF~~c~ 180 (401)
T 4fdw_A 111 ILKGYNEIILPNS--VKSIPKDAFRNS-QIAKVVLNEG--LKSIGDMAFFN-S-TVQEIVFPS--TLEQLKED-IFYYCY 180 (401)
T ss_dssp ECSSCSEEECCTT--CCEECTTTTTTC-CCSEEECCTT--CCEECTTTTTT-C-CCCEEECCT--TCCEECSS-TTTTCT
T ss_pred ecCCccEEEECCc--cCEehHhhcccC-CccEEEeCCC--ccEECHHhcCC-C-CceEEEeCC--CccEehHH-HhhCcc
Confidence 3566666666542 233222344443 5666666542 33222222222 2 466666654 12211111 123667
Q ss_pred CccEeeecccCCCCCCccccccCCCCCeeeecCCCCCChHHHHHHHhcCCCCCEEEccCC-cccChhhHHHHHhcCCccc
Q 012207 203 EIRTLDLSYLPITEKCLPPVVKLQYLEDLVLEGCHGIDDDGLASVEYSCKSLKALNLSKC-QNISHVGLSSLIKGADYLQ 281 (468)
Q Consensus 203 ~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~~L~~L~l~~~-~~~~~~~~~~~~~~~~~L~ 281 (468)
+|+.+++..+.+..-....+. +.+|+.+.+.. .+......++.. |++|+.+.+... ..+.... +.. .+|+
T Consensus 181 ~L~~l~l~~n~l~~I~~~aF~-~~~L~~l~lp~--~l~~I~~~aF~~-~~~L~~l~l~~~l~~I~~~a----F~~-~~L~ 251 (401)
T 4fdw_A 181 NLKKADLSKTKITKLPASTFV-YAGIEEVLLPV--TLKEIGSQAFLK-TSQLKTIEIPENVSTIGQEA----FRE-SGIT 251 (401)
T ss_dssp TCCEEECTTSCCSEECTTTTT-TCCCSEEECCT--TCCEECTTTTTT-CTTCCCEECCTTCCEECTTT----TTT-CCCS
T ss_pred cCCeeecCCCcceEechhhEe-ecccCEEEeCC--chheehhhHhhC-CCCCCEEecCCCccCccccc----ccc-CCcc
Confidence 777777766544332222232 45666666653 233333233333 666666666542 1111111 111 3455
Q ss_pred eEeecCCCCCchhHHHHhhcCCCCCeeEecCCcCChhHHHHHHHhCCCCCeEecccCCCCCHHHHHHHHHhCCCCCeEec
Q 012207 282 QLILAYSFWVSADLSKCLHNFPMLQSIKFEDCPVARSGIKAIGNWHGSLKELSLSKCSGVTDEELSFVVQSHKELRKLDI 361 (468)
Q Consensus 282 ~L~l~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~l~~~~~~L~~L~l~~~~~~~~~~l~~~~~~~~~L~~L~l 361 (468)
.+.+... +......++..|++|+.+.+.++..... .++ .+. ...+.+|++|+.+.+
T Consensus 252 ~i~lp~~--i~~I~~~aF~~c~~L~~l~l~~~~~~~~----------~~~--------~I~----~~aF~~c~~L~~l~l 307 (401)
T 4fdw_A 252 TVKLPNG--VTNIASRAFYYCPELAEVTTYGSTFNDD----------PEA--------MIH----PYCLEGCPKLARFEI 307 (401)
T ss_dssp EEEEETT--CCEECTTTTTTCTTCCEEEEESSCCCCC----------TTC--------EEC----TTTTTTCTTCCEECC
T ss_pred EEEeCCC--ccEEChhHhhCCCCCCEEEeCCccccCC----------ccc--------EEC----HHHhhCCccCCeEEe
Confidence 5555321 2212222334444555554444322100 000 011 111345666777766
Q ss_pred CCCCCCCHHHHHHHHhcCCcCCeEEccCCCCCCHHHHHHHHhcCCCCCEEEccCCCCChhhHHhcccCC-CCCEEeeCCC
Q 012207 362 TCCRKITYASINSITKTCTSLTSLRMECCKLVSWEAFVLIGQQCQYLEELDITENEVNDEGLKSISRCS-KLSSLKLGIC 440 (468)
Q Consensus 362 ~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~-~L~~L~l~~~ 440 (468)
... ++..+-. .+.+|++|+.+.+.. .++.-+-..+. +| +|+.+.+.++.+.......+..++ +++.|.+..+
T Consensus 308 ~~~--i~~I~~~-aF~~c~~L~~l~lp~--~l~~I~~~aF~-~~-~L~~l~l~~n~~~~l~~~~F~~~~~~l~~l~vp~~ 380 (401)
T 4fdw_A 308 PES--IRILGQG-LLGGNRKVTQLTIPA--NVTQINFSAFN-NT-GIKEVKVEGTTPPQVFEKVWYGFPDDITVIRVPAE 380 (401)
T ss_dssp CTT--CCEECTT-TTTTCCSCCEEEECT--TCCEECTTSSS-SS-CCCEEEECCSSCCBCCCSSCCCSCTTCCEEEECGG
T ss_pred CCc--eEEEhhh-hhcCCCCccEEEECc--cccEEcHHhCC-CC-CCCEEEEcCCCCcccccccccCCCCCccEEEeCHH
Confidence 531 2211111 123567777777743 23322222233 66 788888888766554434455554 6778887765
|
| >4fdw_A Leucine rich hypothetical protein; putative cell surface protein, BIG3 domain, LRR domain, STRU genomics; 2.05A {Bacteroides ovatus} PDB: 4fd0_A | Back alignment and structure |
|---|
Probab=98.31 E-value=1e-08 Score=93.85 Aligned_cols=167 Identities=13% Similarity=0.131 Sum_probs=93.9
Q ss_pred CccceEeecCCCCCchhHHHHhhcCCCCCeeEecCCc--CChhHHHHHHHhCCCCCeEecccCCCCCHHHHHHHHHhCCC
Q 012207 278 DYLQQLILAYSFWVSADLSKCLHNFPMLQSIKFEDCP--VARSGIKAIGNWHGSLKELSLSKCSGVTDEELSFVVQSHKE 355 (468)
Q Consensus 278 ~~L~~L~l~~~~~~~~~~~~~l~~~~~L~~L~l~~~~--~~~~~~~~l~~~~~~L~~L~l~~~~~~~~~~l~~~~~~~~~ 355 (468)
.+|+.+.+... +......++..+++|+.+.+..+- +....+. . .+|+.+.+.. .+...+ ...+.+|++
T Consensus 203 ~~L~~l~lp~~--l~~I~~~aF~~~~~L~~l~l~~~l~~I~~~aF~----~-~~L~~i~lp~--~i~~I~-~~aF~~c~~ 272 (401)
T 4fdw_A 203 AGIEEVLLPVT--LKEIGSQAFLKTSQLKTIEIPENVSTIGQEAFR----E-SGITTVKLPN--GVTNIA-SRAFYYCPE 272 (401)
T ss_dssp CCCSEEECCTT--CCEECTTTTTTCTTCCCEECCTTCCEECTTTTT----T-CCCSEEEEET--TCCEEC-TTTTTTCTT
T ss_pred cccCEEEeCCc--hheehhhHhhCCCCCCEEecCCCccCccccccc----c-CCccEEEeCC--CccEEC-hhHhhCCCC
Confidence 45555555432 222223345566666666665431 2222221 1 5677777743 222111 122456788
Q ss_pred CCeEecCCCCC-------CCHHHHHHHHhcCCcCCeEEccCCCCCCHHHHHHHHhcCCCCCEEEccCCCCChhhHHhccc
Q 012207 356 LRKLDITCCRK-------ITYASINSITKTCTSLTSLRMECCKLVSWEAFVLIGQQCQYLEELDITENEVNDEGLKSISR 428 (468)
Q Consensus 356 L~~L~l~~~~~-------~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~ 428 (468)
|+.+.+.++.. +.. ..+..|++|+.+.+.. .++.-+-..+. .|++|+.+.+.++ ++..+...+..
T Consensus 273 L~~l~l~~~~~~~~~~~~I~~----~aF~~c~~L~~l~l~~--~i~~I~~~aF~-~c~~L~~l~lp~~-l~~I~~~aF~~ 344 (401)
T 4fdw_A 273 LAEVTTYGSTFNDDPEAMIHP----YCLEGCPKLARFEIPE--SIRILGQGLLG-GNRKVTQLTIPAN-VTQINFSAFNN 344 (401)
T ss_dssp CCEEEEESSCCCCCTTCEECT----TTTTTCTTCCEECCCT--TCCEECTTTTT-TCCSCCEEEECTT-CCEECTTSSSS
T ss_pred CCEEEeCCccccCCcccEECH----HHhhCCccCCeEEeCC--ceEEEhhhhhc-CCCCccEEEECcc-ccEEcHHhCCC
Confidence 88888765432 221 1224789999999974 24433333333 8899999999654 66666667788
Q ss_pred CCCCCEEeeCCCCccCHHHHHHHHhcCc-ccCeeecCC
Q 012207 429 CSKLSSLKLGICSNITDEGLKHVGSTCS-MLKELDLYR 465 (468)
Q Consensus 429 ~~~L~~L~l~~~~~l~~~~~~~~~~~~~-~L~~L~l~~ 465 (468)
| +|+.+.+.++ .+....-.. ...++ +++.|.+..
T Consensus 345 ~-~L~~l~l~~n-~~~~l~~~~-F~~~~~~l~~l~vp~ 379 (401)
T 4fdw_A 345 T-GIKEVKVEGT-TPPQVFEKV-WYGFPDDITVIRVPA 379 (401)
T ss_dssp S-CCCEEEECCS-SCCBCCCSS-CCCSCTTCCEEEECG
T ss_pred C-CCCEEEEcCC-CCccccccc-ccCCCCCccEEEeCH
Confidence 8 9999999988 544321112 22453 677777654
|
| >4fs7_A Uncharacterized protein; leucine-rich repeats, protein binding, extracellular protein structural genomics; HET: MSE; 1.19A {Bacteroides ovatus} | Back alignment and structure |
|---|
Probab=98.28 E-value=2.5e-08 Score=91.77 Aligned_cols=233 Identities=14% Similarity=0.148 Sum_probs=133.7
Q ss_pred cCCCCcEEeccCCCCCChHHHHHHHhhCCCccEeeecccCCCCCCccccccCCCCCeeeecCCCCCChHHHHHHHhcCCC
Q 012207 174 CCRKLKLLCLKWCIRVTDLGVELVALKCQEIRTLDLSYLPITEKCLPPVVKLQYLEDLVLEGCHGIDDDGLASVEYSCKS 253 (468)
Q Consensus 174 ~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~~ 253 (468)
.|++|+.+.+... +...+ ...+..|++|+.+.+..+ +....-..+..+..|+.+.+......... ....+.+
T Consensus 160 ~c~~L~~i~l~~~--~~~I~-~~~F~~c~~L~~i~l~~~-~~~I~~~~F~~~~~L~~i~~~~~~~~i~~----~~~~~~~ 231 (394)
T 4fs7_A 160 TCESLEYVSLPDS--METLH-NGLFSGCGKLKSIKLPRN-LKIIRDYCFAECILLENMEFPNSLYYLGD----FALSKTG 231 (394)
T ss_dssp TCTTCCEEECCTT--CCEEC-TTTTTTCTTCCBCCCCTT-CCEECTTTTTTCTTCCBCCCCTTCCEECT----TTTTTCC
T ss_pred ccCCCcEEecCCc--cceec-cccccCCCCceEEEcCCC-ceEeCchhhccccccceeecCCCceEeeh----hhcccCC
Confidence 3889999988653 22111 112347889999988654 22222234556778887777652211111 1112578
Q ss_pred CCEEEccCCcc-cChhhHHHHHhcCCccceEeecCCCCCchhHHHHhhcCCCCCeeEecCCcCChhHHHHHHHhCCCCCe
Q 012207 254 LKALNLSKCQN-ISHVGLSSLIKGADYLQQLILAYSFWVSADLSKCLHNFPMLQSIKFEDCPVARSGIKAIGNWHGSLKE 332 (468)
Q Consensus 254 L~~L~l~~~~~-~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~l~~~~~~L~~ 332 (468)
|+.+.+..... +.. ..+..+..++.+.+... ........+..++.++.+......+.+..+ ..+.+|+.
T Consensus 232 l~~i~ip~~~~~i~~----~~f~~~~~l~~~~~~~~--~~~i~~~~F~~~~~l~~~~~~~~~i~~~~F----~~~~~L~~ 301 (394)
T 4fs7_A 232 VKNIIIPDSFTELGK----SVFYGCTDLESISIQNN--KLRIGGSLFYNCSGLKKVIYGSVIVPEKTF----YGCSSLTE 301 (394)
T ss_dssp CCEEEECTTCCEECS----STTTTCSSCCEEEECCT--TCEECSCTTTTCTTCCEEEECSSEECTTTT----TTCTTCCE
T ss_pred CceEEECCCceeccc----ccccccccceeEEcCCC--cceeeccccccccccceeccCceeeccccc----cccccccc
Confidence 88888865321 111 12455778888887653 222222345577788888777665544332 26788999
Q ss_pred EecccCCCCCHHHHHHHHHhCCCCCeEecCCCCCCCHHHHHHHHhcCCcCCeEEccCCCCCCHHHHHHHHhcCCCCCEEE
Q 012207 333 LSLSKCSGVTDEELSFVVQSHKELRKLDITCCRKITYASINSITKTCTSLTSLRMECCKLVSWEAFVLIGQQCQYLEELD 412 (468)
Q Consensus 333 L~l~~~~~~~~~~l~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~ 412 (468)
+.+.. .+...+ ...+.+|.+|++++|... ++..+-. .+.+|.+|+.+.+.. .++.-+-.++. +|++|+.++
T Consensus 302 i~l~~--~i~~I~-~~aF~~c~~L~~i~lp~~--v~~I~~~-aF~~c~~L~~i~lp~--~l~~I~~~aF~-~C~~L~~i~ 372 (394)
T 4fs7_A 302 VKLLD--SVKFIG-EEAFESCTSLVSIDLPYL--VEEIGKR-SFRGCTSLSNINFPL--SLRKIGANAFQ-GCINLKKVE 372 (394)
T ss_dssp EEECT--TCCEEC-TTTTTTCTTCCEECCCTT--CCEECTT-TTTTCTTCCEECCCT--TCCEECTTTBT-TCTTCCEEE
T ss_pred ccccc--ccceec-hhhhcCCCCCCEEEeCCc--ccEEhHH-hccCCCCCCEEEECc--cccEehHHHhh-CCCCCCEEE
Confidence 98864 222211 122557889999998642 2222111 124689999999964 24332223333 899999999
Q ss_pred ccCCCCChhhHHhcccCCCCCEE
Q 012207 413 ITENEVNDEGLKSISRCSKLSSL 435 (468)
Q Consensus 413 l~~~~~~~~~~~~l~~~~~L~~L 435 (468)
+..+ +.... ..+..|++|+.+
T Consensus 373 lp~~-~~~~~-~~F~~c~~L~~I 393 (394)
T 4fs7_A 373 LPKR-LEQYR-YDFEDTTKFKWI 393 (394)
T ss_dssp EEGG-GGGGG-GGBCTTCEEEEE
T ss_pred ECCC-CEEhh-heecCCCCCcEE
Confidence 9764 22222 356678888765
|
| >2o6r_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 2.30A {Eptatretus burgeri} | Back alignment and structure |
|---|
Probab=98.27 E-value=7.7e-07 Score=71.57 Aligned_cols=110 Identities=17% Similarity=0.092 Sum_probs=46.4
Q ss_pred CCccEeeecccCCCCCCccccccCCCCCeeeecCCCCCChHHHHHHHhcCCCCCEEEccCCcccChhhHHHHHhcCCccc
Q 012207 202 QEIRTLDLSYLPITEKCLPPVVKLQYLEDLVLEGCHGIDDDGLASVEYSCKSLKALNLSKCQNISHVGLSSLIKGADYLQ 281 (468)
Q Consensus 202 ~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~ 281 (468)
++|++|+++++.+.......+..+++|++|+++++ .+.......+.. +++|+.|+++++...... ...+..+++|+
T Consensus 28 ~~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n-~l~~~~~~~~~~-l~~L~~L~l~~N~l~~~~--~~~~~~l~~L~ 103 (177)
T 2o6r_A 28 SSATRLELESNKLQSLPHGVFDKLTQLTKLSLSQN-QIQSLPDGVFDK-LTKLTILYLHENKLQSLP--NGVFDKLTQLK 103 (177)
T ss_dssp TTCSEEECCSSCCCCCCTTTTTTCTTCSEEECCSS-CCCCCCTTTTTT-CTTCCEEECCSSCCCCCC--TTTTTTCTTCC
T ss_pred CCCcEEEeCCCcccEeCHHHhcCcccccEEECCCC-cceEeChhHccC-CCccCEEECCCCCccccC--HHHhhCCcccC
Confidence 45555555555554333333445555666665553 233221111222 455555555554311100 01122334444
Q ss_pred eEeecCCCCCchhHHHHhhcCCCCCeeEecCCcCC
Q 012207 282 QLILAYSFWVSADLSKCLHNFPMLQSIKFEDCPVA 316 (468)
Q Consensus 282 ~L~l~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~ 316 (468)
.|+++++ .+.......+..+++|++|++++|.+.
T Consensus 104 ~L~l~~N-~l~~~~~~~~~~l~~L~~L~l~~N~~~ 137 (177)
T 2o6r_A 104 ELALDTN-QLKSVPDGIFDRLTSLQKIWLHTNPWD 137 (177)
T ss_dssp EEECCSS-CCSCCCTTTTTTCTTCCEEECCSSCBC
T ss_pred EEECcCC-cceEeCHHHhcCCcccCEEEecCCCee
Confidence 4444444 222222222344555555555555543
|
| >3g39_A Variable lymphocyte receptor VLRB.2D; antibody, X-RAY, crystallography, immune system; 1.55A {Petromyzon marinus} PDB: 3g3a_A 3g3b_A 3twi_D | Back alignment and structure |
|---|
Probab=98.16 E-value=4.2e-07 Score=72.46 Aligned_cols=86 Identities=14% Similarity=0.091 Sum_probs=62.6
Q ss_pred CCCCeEecCCCCCCCHHHHHHHHhcCCcCCeEEccCCCCCCHHHHHHHHhcCCCCCEEEccCCCCChhhHHhcccCCCCC
Q 012207 354 KELRKLDITCCRKITYASINSITKTCTSLTSLRMECCKLVSWEAFVLIGQQCQYLEELDITENEVNDEGLKSISRCSKLS 433 (468)
Q Consensus 354 ~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~ 433 (468)
++|+.|++++|. ++... ...+..+++|++|+++++ .++......+ ..+++|++|++++|.++......+..+++|+
T Consensus 30 ~~l~~L~L~~N~-i~~~~-~~~~~~l~~L~~L~Ls~N-~l~~l~~~~f-~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~ 105 (170)
T 3g39_A 30 TTTQVLYLYDNQ-ITKLE-PGVFDRLTQLTRLDLDNN-QLTVLPAGVF-DKLTQLTQLSLNDNQLKSIPRGAFDNLKSLT 105 (170)
T ss_dssp TTCSEEECCSSC-CCCCC-TTTTTTCTTCSEEECCSS-CCCCCCTTTT-TTCTTCCEEECCSSCCCCCCTTTTTTCTTCC
T ss_pred CCCcEEEcCCCc-CCccC-hhhhcCcccCCEEECCCC-CcCccChhhc-cCCCCCCEEECCCCccCEeCHHHhcCCCCCC
Confidence 689999999876 43221 122346899999999985 4553222222 3789999999999999887666677899999
Q ss_pred EEeeCCCCccC
Q 012207 434 SLKLGICSNIT 444 (468)
Q Consensus 434 ~L~l~~~~~l~ 444 (468)
.|++++| .++
T Consensus 106 ~L~L~~N-~~~ 115 (170)
T 3g39_A 106 HIWLLNN-PWD 115 (170)
T ss_dssp EEECCSS-CBC
T ss_pred EEEeCCC-CCC
Confidence 9999999 553
|
| >2r9u_A Variable lymphocyte receptor; adaptive immunity, VLR, leucine-rich repeat, LRR, system; 2.10A {Petromyzon marinus} | Back alignment and structure |
|---|
Probab=98.14 E-value=5.1e-07 Score=72.23 Aligned_cols=86 Identities=13% Similarity=0.090 Sum_probs=61.9
Q ss_pred CCCCeEecCCCCCCCHHHHHHHHhcCCcCCeEEccCCCCCCHHHHHHHHhcCCCCCEEEccCCCCChhhHHhcccCCCCC
Q 012207 354 KELRKLDITCCRKITYASINSITKTCTSLTSLRMECCKLVSWEAFVLIGQQCQYLEELDITENEVNDEGLKSISRCSKLS 433 (468)
Q Consensus 354 ~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~ 433 (468)
++|+.|++++|. ++... ...+..+++|+.|+++++ .++..... ....+++|+.|++++|.++......+..+++|+
T Consensus 33 ~~L~~L~Ls~N~-l~~~~-~~~~~~l~~L~~L~Ls~N-~l~~i~~~-~~~~l~~L~~L~L~~N~l~~l~~~~~~~l~~L~ 108 (174)
T 2r9u_A 33 TDKQRLWLNNNQ-ITKLE-PGVFDHLVNLQQLYFNSN-KLTAIPTG-VFDKLTQLTQLDLNDNHLKSIPRGAFDNLKSLT 108 (174)
T ss_dssp TTCSEEECCSSC-CCCCC-TTTTTTCTTCCEEECCSS-CCCCCCTT-TTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCS
T ss_pred CCCcEEEeCCCC-ccccC-HHHhcCCcCCCEEECCCC-CCCccChh-HhCCcchhhEEECCCCccceeCHHHhccccCCC
Confidence 689999999876 43221 122346899999999985 45532211 223789999999999998876655577899999
Q ss_pred EEeeCCCCccC
Q 012207 434 SLKLGICSNIT 444 (468)
Q Consensus 434 ~L~l~~~~~l~ 444 (468)
.|++++| .+.
T Consensus 109 ~L~L~~N-~~~ 118 (174)
T 2r9u_A 109 HIYLYNN-PWD 118 (174)
T ss_dssp EEECCSS-CBC
T ss_pred EEEeCCC-Ccc
Confidence 9999999 554
|
| >2e31_A FBS1, F-box only protein 2; ubiquitin, SCF, ubiquitin ligase, FBS1; 2.40A {Mus musculus} PDB: 2e32_A | Back alignment and structure |
|---|
Probab=98.09 E-value=1.9e-06 Score=73.47 Aligned_cols=40 Identities=13% Similarity=0.171 Sum_probs=36.9
Q ss_pred CCcccCcHHHHHHHHhhhcCChhhhh-HHhhhhhhHHHHHHhh
Q 012207 10 NPFDFLSEEIIFNILDHLNNDPFARK-SFSLTCRNFYSIESRH 51 (468)
Q Consensus 10 ~~~~~LP~eil~~I~~~~l~~~~~~~-~~~~v~~~w~~~~~~~ 51 (468)
..+..||+|++..||+ +|| +++++ ++++|||+|+.++.+.
T Consensus 49 ~~~~~LP~ell~~Il~-~Lp-~~~L~~r~~~VCk~Wr~l~~~~ 89 (297)
T 2e31_A 49 EYLAELPEPLLLRVLA-ELP-ATELVQACRLVCLRWKELVDGA 89 (297)
T ss_dssp CCTTSSCHHHHHHHHH-TSC-HHHHHHTGGGTCHHHHHHHTSH
T ss_pred cChhhCCHHHHHHHHH-cCC-HHHHHHHHHHHhHHHHHHhcCh
Confidence 5789999999999999 998 99999 9999999999998654
|
| >3l2o_B F-box only protein 4; small G protein fold, UBL conjugation pathway, ubiquitin Pro ligase, protein binding-cell cycle complex; 2.80A {Homo sapiens} | Back alignment and structure |
|---|
Probab=97.98 E-value=2.6e-06 Score=71.65 Aligned_cols=39 Identities=13% Similarity=0.125 Sum_probs=36.2
Q ss_pred CcccCcHHHHHHHHhhhcCChhhhhHHhhhhhhHHHHHHhh
Q 012207 11 PFDFLSEEIIFNILDHLNNDPFARKSFSLTCRNFYSIESRH 51 (468)
Q Consensus 11 ~~~~LP~eil~~I~~~~l~~~~~~~~~~~v~~~w~~~~~~~ 51 (468)
.++.||+||+.+||+ ||+ ++|+.+++.|||+|+.++.+.
T Consensus 4 ~l~~LP~ei~l~Ils-fL~-p~DL~~l~~vcr~Wr~la~D~ 42 (312)
T 3l2o_B 4 TLTRLPIDVQLYILS-FLS-PHDLCQLGSTNHYWNETVRDP 42 (312)
T ss_dssp HHHHSCHHHHHHHHH-TSC-HHHHHHHHTTCHHHHHHHTCH
T ss_pred hhHhCCHHHHHHHHh-cCC-HHHHHHHHHHHHHHHHHhccc
Confidence 588999999999999 997 999999999999999987654
|
| >3rw6_A Nuclear RNA export factor 1; retroviral constitutive transport element (CTE), RNA recogni motif (RRM); HET: GTP CCC; 2.30A {Homo sapiens} PDB: 3rw7_A 1koo_A 1koh_A 1ft8_A 1fo1_A | Back alignment and structure |
|---|
Probab=97.93 E-value=2.8e-05 Score=65.99 Aligned_cols=83 Identities=24% Similarity=0.283 Sum_probs=55.3
Q ss_pred hcCCcCCeEEccCCCCCCH-HHHHHHHhcCCCCCEEEccCCCCChh-hHHhcccCCCCCEEeeCCCCccCH------HHH
Q 012207 377 KTCTSLTSLRMECCKLVSW-EAFVLIGQQCQYLEELDITENEVNDE-GLKSISRCSKLSSLKLGICSNITD------EGL 448 (468)
Q Consensus 377 ~~~~~L~~L~l~~~~~~~~-~~~~~~~~~~~~L~~L~l~~~~~~~~-~~~~l~~~~~L~~L~l~~~~~l~~------~~~ 448 (468)
..+++|+.|+++++. ++. .++......+++|+.|+|++|.+++. .+..+..+ +|++|++++| .++. ...
T Consensus 167 ~~l~~L~~L~Ls~N~-l~~l~~l~~~~~~l~~L~~L~Ls~N~i~~~~~l~~l~~l-~L~~L~L~~N-pl~~~~~~~~~y~ 243 (267)
T 3rw6_A 167 ENIPELLSLNLSNNR-LYRLDDMSSIVQKAPNLKILNLSGNELKSERELDKIKGL-KLEELWLDGN-SLCDTFRDQSTYI 243 (267)
T ss_dssp HHCTTCCEEECTTSC-CCCCGGGTTHHHHSTTCCEEECTTSCCCSGGGGGGGTTS-CCSEEECTTS-TTGGGCSSHHHHH
T ss_pred hhCCCCCEEECCCCC-CCCCccchhHHhhCCCCCEEECCCCccCCchhhhhcccC-CcceEEccCC-cCccccCcchhHH
Confidence 457777777777743 433 23333444788999999999988775 22333333 8999999999 5653 233
Q ss_pred HHHHhcCcccCeee
Q 012207 449 KHVGSTCSMLKELD 462 (468)
Q Consensus 449 ~~~~~~~~~L~~L~ 462 (468)
..+...+|+|+.|+
T Consensus 244 ~~il~~~P~L~~LD 257 (267)
T 3rw6_A 244 SAIRERFPKLLRLD 257 (267)
T ss_dssp HHHHHHCTTCCEES
T ss_pred HHHHHHCcccCeEC
Confidence 45667899999886
|
| >4gt6_A Cell surface protein; leucine rich repeats, putative protein binding, extracellula protein, structural genomics; HET: MSE; 1.80A {Faecalibacterium prausnitzii a2-165} | Back alignment and structure |
|---|
Probab=97.92 E-value=3.8e-07 Score=83.85 Aligned_cols=310 Identities=15% Similarity=0.148 Sum_probs=162.9
Q ss_pred cC-CCCcEEEccCCCccCHHHHHHHHcCCCCCeEeccCC--cccChHhHHHHHhcCCCCcEEeccCCCCCChHHHHHHHh
Q 012207 123 NC-RFLTEIDLSNGTEMGDAAAAAIAEAKNLERLWLARC--KLITDLGIGRIAACCRKLKLLCLKWCIRVTDLGVELVAL 199 (468)
Q Consensus 123 ~~-~~L~~L~l~~~~~~~~~~~~~l~~~~~L~~L~l~~~--~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~ 199 (468)
.| ..|+++.+... ++.....++..|.+|+.+.+... ..+...+-.++.. |.+|+.+.+... ++..+.. .+.
T Consensus 61 ~~~~~L~sI~iP~s--vt~Ig~~AF~~C~~L~~i~~~~n~p~~l~~Ig~~aF~~-c~~L~~i~~~~~--~~~I~~~-aF~ 134 (394)
T 4gt6_A 61 NYKYVLTSVQIPDT--VTEIGSNAFYNCTSLKRVTIQDNKPSCVKKIGRQAFMF-CSELTDIPILDS--VTEIDSE-AFH 134 (394)
T ss_dssp TCCSCCCEEEECTT--CCEECTTTTTTCTTCCEEEEGGGCCCCCCEECTTTTTT-CTTCCBCGGGTT--CSEECTT-TTT
T ss_pred CCCCcCEEEEECCC--eeEEhHHHhhCCccCceEeecCCCCCeeeEechhhchh-cccceeeccCCc--cceehhh-hhh
Confidence 55 46999999754 44444567888999999988653 2233333333333 788888777542 2222111 224
Q ss_pred hCCCccEeeecccCCCCCCccccccCCCCCeeeecCCCCCChHHHHHHHhcCCCCCEEEccCCcc-cChhhHHHHHhcCC
Q 012207 200 KCQEIRTLDLSYLPITEKCLPPVVKLQYLEDLVLEGCHGIDDDGLASVEYSCKSLKALNLSKCQN-ISHVGLSSLIKGAD 278 (468)
Q Consensus 200 ~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~~L~~L~l~~~~~-~~~~~~~~~~~~~~ 278 (468)
.|.+|+.+.+... +....-..+..+..|+.+.+.. .+......++. ..+|+.+.+..... +.. ..+..+.
T Consensus 135 ~c~~L~~i~lp~~-~~~I~~~~F~~c~~L~~i~~~~--~~~~I~~~aF~--~~~l~~i~ip~~~~~i~~----~af~~c~ 205 (394)
T 4gt6_A 135 HCEELDTVTIPEG-VTSVADGMFSYCYSLHTVTLPD--SVTAIEERAFT--GTALTQIHIPAKVTRIGT----NAFSECF 205 (394)
T ss_dssp TCTTCCEEECCTT-CCEECTTTTTTCTTCCEEECCT--TCCEECTTTTT--TCCCSEEEECTTCCEECT----TTTTTCT
T ss_pred hhcccccccccce-eeeecccceecccccccccccc--eeeEecccccc--ccceeEEEECCccccccc----chhhhcc
Confidence 7889999988653 2212223455678888888765 23322222232 46788888865321 111 1134456
Q ss_pred ccceEeecCCCCCc--hhHH----------HHhhcCCCCCeeEecCCc--CChhHHHHHHHhCCCCCeEecccCCCCCHH
Q 012207 279 YLQQLILAYSFWVS--ADLS----------KCLHNFPMLQSIKFEDCP--VARSGIKAIGNWHGSLKELSLSKCSGVTDE 344 (468)
Q Consensus 279 ~L~~L~l~~~~~~~--~~~~----------~~l~~~~~L~~L~l~~~~--~~~~~~~~l~~~~~~L~~L~l~~~~~~~~~ 344 (468)
.++........... .... ........+..+.+...- +.+..+ ..+..|+.+.+... +...
T Consensus 206 ~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ip~~v~~i~~~aF----~~c~~L~~i~lp~~--~~~I 279 (394)
T 4gt6_A 206 ALSTITSDSESYPAIDNVLYEKSANGDYALIRYPSQREDPAFKIPNGVARIETHAF----DSCAYLASVKMPDS--VVSI 279 (394)
T ss_dssp TCCEEEECCSSSCBSSSCEEEECTTSCEEEEECCTTCCCSEEECCTTEEEECTTTT----TTCSSCCEEECCTT--CCEE
T ss_pred ccceecccccccccccceeecccccccccccccccccccceEEcCCcceEccccee----eecccccEEecccc--ccee
Confidence 66665543321100 0000 000111233334333210 111111 25678888888642 1111
Q ss_pred HHHHHHHhCCCCCeEecCCCCCCCHHHHHHHHhcCCcCCeEEccCCCCCCHHHHHHHHhcCCCCCEEEccCCCCChhhHH
Q 012207 345 ELSFVVQSHKELRKLDITCCRKITYASINSITKTCTSLTSLRMECCKLVSWEAFVLIGQQCQYLEELDITENEVNDEGLK 424 (468)
Q Consensus 345 ~l~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~ 424 (468)
+ ...+..|+.|+.+.+... ++..+- ..+.+|.+|+.+.+.. .++.-+-.++. .|.+|+.+.+..+ ++..+..
T Consensus 280 ~-~~aF~~c~~L~~i~l~~~--i~~I~~-~aF~~c~~L~~i~lp~--~v~~I~~~aF~-~C~~L~~i~ip~s-v~~I~~~ 351 (394)
T 4gt6_A 280 G-TGAFMNCPALQDIEFSSR--ITELPE-SVFAGCISLKSIDIPE--GITQILDDAFA-GCEQLERIAIPSS-VTKIPES 351 (394)
T ss_dssp C-TTTTTTCTTCCEEECCTT--CCEECT-TTTTTCTTCCEEECCT--TCCEECTTTTT-TCTTCCEEEECTT-CCBCCGG
T ss_pred c-CcccccccccccccCCCc--ccccCc-eeecCCCCcCEEEeCC--cccEehHhHhh-CCCCCCEEEECcc-cCEEhHh
Confidence 1 112446788888888532 221111 1224688999999853 23322222333 8899999999654 6666667
Q ss_pred hcccCCCCCEEeeCCCCccCHHHHHHHHhcCcccCeeecCCC
Q 012207 425 SISRCSKLSSLKLGICSNITDEGLKHVGSTCSMLKELDLYRF 466 (468)
Q Consensus 425 ~l~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~~L~~L~l~~c 466 (468)
++..|++|+.+.+.++ ... ... ...+.+|+.+.+..+
T Consensus 352 aF~~C~~L~~i~~~~~-~~~---~~~-~~~~~~L~~i~i~~~ 388 (394)
T 4gt6_A 352 AFSNCTALNNIEYSGS-RSQ---WNA-ISTDSGLQNLPVAPG 388 (394)
T ss_dssp GGTTCTTCCEEEESSC-HHH---HHT-CBCCCCC--------
T ss_pred HhhCCCCCCEEEECCc-eee---hhh-hhccCCCCEEEeCCC
Confidence 7888999999999876 322 222 246788888887654
|
| >3g39_A Variable lymphocyte receptor VLRB.2D; antibody, X-RAY, crystallography, immune system; 1.55A {Petromyzon marinus} PDB: 3g3a_A 3g3b_A 3twi_D | Back alignment and structure |
|---|
Probab=97.88 E-value=3e-06 Score=67.48 Aligned_cols=106 Identities=14% Similarity=0.066 Sum_probs=65.6
Q ss_pred CCeeEecCCcCChhHHHHHHHhCCCCCeEecccCCCCCHHHHHHHHHhCCCCCeEecCCCCCCCHHHHHHHHhcCCcCCe
Q 012207 305 LQSIKFEDCPVARSGIKAIGNWHGSLKELSLSKCSGVTDEELSFVVQSHKELRKLDITCCRKITYASINSITKTCTSLTS 384 (468)
Q Consensus 305 L~~L~l~~~~~~~~~~~~l~~~~~~L~~L~l~~~~~~~~~~l~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~ 384 (468)
.+.++++++.++... .. ..++|++|+++++ .++.. .+..+..+++|+.|++++|. ++... ...+..+++|++
T Consensus 11 ~~~l~~s~n~l~~ip-~~---~~~~l~~L~L~~N-~i~~~-~~~~~~~l~~L~~L~Ls~N~-l~~l~-~~~f~~l~~L~~ 82 (170)
T 3g39_A 11 GTTVDCSGKSLASVP-TG---IPTTTQVLYLYDN-QITKL-EPGVFDRLTQLTRLDLDNNQ-LTVLP-AGVFDKLTQLTQ 82 (170)
T ss_dssp TTEEECTTSCCSSCC-SC---CCTTCSEEECCSS-CCCCC-CTTTTTTCTTCSEEECCSSC-CCCCC-TTTTTTCTTCCE
T ss_pred CCEEEeCCCCcCccC-cc---CCCCCcEEEcCCC-cCCcc-ChhhhcCcccCCEEECCCCC-cCccC-hhhccCCCCCCE
Confidence 455666665544311 11 2378999999884 44432 12335577899999999876 44221 122346889999
Q ss_pred EEccCCCCCCHHHHHHHHhcCCCCCEEEccCCCCCh
Q 012207 385 LRMECCKLVSWEAFVLIGQQCQYLEELDITENEVND 420 (468)
Q Consensus 385 L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~ 420 (468)
|+++++ .++......+ ..+++|+.|++++|.++.
T Consensus 83 L~L~~N-~l~~~~~~~~-~~l~~L~~L~L~~N~~~c 116 (170)
T 3g39_A 83 LSLNDN-QLKSIPRGAF-DNLKSLTHIWLLNNPWDC 116 (170)
T ss_dssp EECCSS-CCCCCCTTTT-TTCTTCCEEECCSSCBCT
T ss_pred EECCCC-ccCEeCHHHh-cCCCCCCEEEeCCCCCCC
Confidence 999884 3543222223 378899999999987754
|
| >2r9u_A Variable lymphocyte receptor; adaptive immunity, VLR, leucine-rich repeat, LRR, system; 2.10A {Petromyzon marinus} | Back alignment and structure |
|---|
Probab=97.86 E-value=3.4e-06 Score=67.41 Aligned_cols=105 Identities=13% Similarity=0.068 Sum_probs=65.5
Q ss_pred CeeEecCCcCChhHHHHHHHhCCCCCeEecccCCCCCHHHHHHHHHhCCCCCeEecCCCCCCCHHHHHHHHhcCCcCCeE
Q 012207 306 QSIKFEDCPVARSGIKAIGNWHGSLKELSLSKCSGVTDEELSFVVQSHKELRKLDITCCRKITYASINSITKTCTSLTSL 385 (468)
Q Consensus 306 ~~L~l~~~~~~~~~~~~l~~~~~~L~~L~l~~~~~~~~~~l~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L 385 (468)
+.++++++.+.... .. ..++|++|+++++ .++.. .+..+..+++|+.|++++|. ++... ...+..+++|+.|
T Consensus 15 ~~l~~~~n~l~~iP-~~---~~~~L~~L~Ls~N-~l~~~-~~~~~~~l~~L~~L~Ls~N~-l~~i~-~~~~~~l~~L~~L 86 (174)
T 2r9u_A 15 TLVNCQNIRLASVP-AG---IPTDKQRLWLNNN-QITKL-EPGVFDHLVNLQQLYFNSNK-LTAIP-TGVFDKLTQLTQL 86 (174)
T ss_dssp SEEECCSSCCSSCC-SC---CCTTCSEEECCSS-CCCCC-CTTTTTTCTTCCEEECCSSC-CCCCC-TTTTTTCTTCCEE
T ss_pred cEEEeCCCCCCccC-CC---cCCCCcEEEeCCC-Ccccc-CHHHhcCCcCCCEEECCCCC-CCccC-hhHhCCcchhhEE
Confidence 45566665543211 11 2378999999984 44431 13345678899999999886 44321 1122468999999
Q ss_pred EccCCCCCCHHHHHHHHhcCCCCCEEEccCCCCCh
Q 012207 386 RMECCKLVSWEAFVLIGQQCQYLEELDITENEVND 420 (468)
Q Consensus 386 ~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~ 420 (468)
+++++ .++......+ ..+++|+.|++++|.+..
T Consensus 87 ~L~~N-~l~~l~~~~~-~~l~~L~~L~L~~N~~~c 119 (174)
T 2r9u_A 87 DLNDN-HLKSIPRGAF-DNLKSLTHIYLYNNPWDC 119 (174)
T ss_dssp ECCSS-CCCCCCTTTT-TTCTTCSEEECCSSCBCT
T ss_pred ECCCC-ccceeCHHHh-ccccCCCEEEeCCCCccc
Confidence 99884 3543221122 378899999999987764
|
| >4gt6_A Cell surface protein; leucine rich repeats, putative protein binding, extracellula protein, structural genomics; HET: MSE; 1.80A {Faecalibacterium prausnitzii a2-165} | Back alignment and structure |
|---|
Probab=97.84 E-value=4.1e-06 Score=76.94 Aligned_cols=309 Identities=15% Similarity=0.197 Sum_probs=166.1
Q ss_pred CCccEEecCCCCcccHHHHHHhhhcCCCCcEEEccCC--CccCHHHHHHHHcCCCCCeEeccCCcccChHhHHHHHhcCC
Q 012207 99 LTLRSINLSRSRLFTKVGLSSLTVNCRFLTEIDLSNG--TEMGDAAAAAIAEAKNLERLWLARCKLITDLGIGRIAACCR 176 (468)
Q Consensus 99 ~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~--~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~ 176 (468)
..|+++.+... ++..+-.++. .|++|+.+.+..+ ..+......++..+.+|+.+.+... +...+-.++. .|.
T Consensus 64 ~~L~sI~iP~s--vt~Ig~~AF~-~C~~L~~i~~~~n~p~~l~~Ig~~aF~~c~~L~~i~~~~~--~~~I~~~aF~-~c~ 137 (394)
T 4gt6_A 64 YVLTSVQIPDT--VTEIGSNAFY-NCTSLKRVTIQDNKPSCVKKIGRQAFMFCSELTDIPILDS--VTEIDSEAFH-HCE 137 (394)
T ss_dssp SCCCEEEECTT--CCEECTTTTT-TCTTCCEEEEGGGCCCCCCEECTTTTTTCTTCCBCGGGTT--CSEECTTTTT-TCT
T ss_pred CcCEEEEECCC--eeEEhHHHhh-CCccCceEeecCCCCCeeeEechhhchhcccceeeccCCc--cceehhhhhh-hhc
Confidence 45899988542 3333333444 8999999998643 1244444456778899998887642 3332222222 389
Q ss_pred CCcEEeccCCCCCChHHHHHHHhhCCCccEeeecccCCCCCCccccccCCCCCeeeecCCCCCChHHHHHHHhcCCCCCE
Q 012207 177 KLKLLCLKWCIRVTDLGVELVALKCQEIRTLDLSYLPITEKCLPPVVKLQYLEDLVLEGCHGIDDDGLASVEYSCKSLKA 256 (468)
Q Consensus 177 ~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~~L~~ 256 (468)
+|+.+.+... +...+ ......|..|+.+.+... +....-..+ ....|+.+.+.. .+...+..++.. +..++.
T Consensus 138 ~L~~i~lp~~--~~~I~-~~~F~~c~~L~~i~~~~~-~~~I~~~aF-~~~~l~~i~ip~--~~~~i~~~af~~-c~~l~~ 209 (394)
T 4gt6_A 138 ELDTVTIPEG--VTSVA-DGMFSYCYSLHTVTLPDS-VTAIEERAF-TGTALTQIHIPA--KVTRIGTNAFSE-CFALST 209 (394)
T ss_dssp TCCEEECCTT--CCEEC-TTTTTTCTTCCEEECCTT-CCEECTTTT-TTCCCSEEEECT--TCCEECTTTTTT-CTTCCE
T ss_pred ccccccccce--eeeec-ccceecccccccccccce-eeEeccccc-cccceeEEEECC--cccccccchhhh-ccccce
Confidence 9999999652 22211 112347899999998765 111111222 235788888865 222222233333 778887
Q ss_pred EEccCCcccChhhHH--H-------H--HhcCCccceEeecCCCCCchhHHHHhhcCCCCCeeEecCCc--CChhHHHHH
Q 012207 257 LNLSKCQNISHVGLS--S-------L--IKGADYLQQLILAYSFWVSADLSKCLHNFPMLQSIKFEDCP--VARSGIKAI 323 (468)
Q Consensus 257 L~l~~~~~~~~~~~~--~-------~--~~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~L~~L~l~~~~--~~~~~~~~l 323 (468)
............... . + ......+..+.+.. .+......++..+..|+.+.+.... +....+
T Consensus 210 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ip~--~v~~i~~~aF~~c~~L~~i~lp~~~~~I~~~aF--- 284 (394)
T 4gt6_A 210 ITSDSESYPAIDNVLYEKSANGDYALIRYPSQREDPAFKIPN--GVARIETHAFDSCAYLASVKMPDSVVSIGTGAF--- 284 (394)
T ss_dssp EEECCSSSCBSSSCEEEECTTSCEEEEECCTTCCCSEEECCT--TEEEECTTTTTTCSSCCEEECCTTCCEECTTTT---
T ss_pred ecccccccccccceeecccccccccccccccccccceEEcCC--cceEcccceeeecccccEEecccccceecCccc---
Confidence 766543211100000 0 0 00011222333221 1111222346678889999887643 222222
Q ss_pred HHhCCCCCeEecccCCCCCHHHHHHHHHhCCCCCeEecCCC-CCCCHHHHHHHHhcCCcCCeEEccCCCCCCHHHHHHHH
Q 012207 324 GNWHGSLKELSLSKCSGVTDEELSFVVQSHKELRKLDITCC-RKITYASINSITKTCTSLTSLRMECCKLVSWEAFVLIG 402 (468)
Q Consensus 324 ~~~~~~L~~L~l~~~~~~~~~~l~~~~~~~~~L~~L~l~~~-~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~ 402 (468)
..+++|+.+.+.. .+...+ ...+.+|.+|+++.|... ..+.+. .+.+|.+|+.+.+.. .++.-+-.++.
T Consensus 285 -~~c~~L~~i~l~~--~i~~I~-~~aF~~c~~L~~i~lp~~v~~I~~~----aF~~C~~L~~i~ip~--sv~~I~~~aF~ 354 (394)
T 4gt6_A 285 -MNCPALQDIEFSS--RITELP-ESVFAGCISLKSIDIPEGITQILDD----AFAGCEQLERIAIPS--SVTKIPESAFS 354 (394)
T ss_dssp -TTCTTCCEEECCT--TCCEEC-TTTTTTCTTCCEEECCTTCCEECTT----TTTTCTTCCEEEECT--TCCBCCGGGGT
T ss_pred -ccccccccccCCC--cccccC-ceeecCCCCcCEEEeCCcccEehHh----HhhCCCCCCEEEECc--ccCEEhHhHhh
Confidence 2678999999864 222211 122557899999999643 222222 224789999999953 23322223333
Q ss_pred hcCCCCCEEEccCCCCChhhHHhcccCCCCCEEeeCCC
Q 012207 403 QQCQYLEELDITENEVNDEGLKSISRCSKLSSLKLGIC 440 (468)
Q Consensus 403 ~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~ 440 (468)
+|++|+.+++.++.. ....+..+.+|+.+.+..+
T Consensus 355 -~C~~L~~i~~~~~~~---~~~~~~~~~~L~~i~i~~~ 388 (394)
T 4gt6_A 355 -NCTALNNIEYSGSRS---QWNAISTDSGLQNLPVAPG 388 (394)
T ss_dssp -TCTTCCEEEESSCHH---HHHTCBCCCCC--------
T ss_pred -CCCCCCEEEECCcee---ehhhhhccCCCCEEEeCCC
Confidence 899999999988642 2345667889999888755
|
| >3v7d_B Cell division control protein 4; WD 40 domain, phospho-peptide complex, E3 ubiquitin ligase, cell cycle, phospho binding protein, phosphorylation; HET: SEP; 2.31A {Saccharomyces cerevisiae} PDB: 1nex_B* 3mks_B* | Back alignment and structure |
|---|
Probab=97.68 E-value=1.3e-05 Score=75.39 Aligned_cols=43 Identities=14% Similarity=0.026 Sum_probs=38.9
Q ss_pred ccCCCCcccCcHHHHHHHHhhhcCChhhhhHHhhhhhhHHHHHHh
Q 012207 6 KKNSNPFDFLSEEIIFNILDHLNNDPFARKSFSLTCRNFYSIESR 50 (468)
Q Consensus 6 ~~~~~~~~~LP~eil~~I~~~~l~~~~~~~~~~~v~~~w~~~~~~ 50 (468)
.-..+++..||+||+.+||+ ||+ ++++.++++|||+|++++..
T Consensus 9 ~~~~d~~~~lp~~~~~~i~~-~l~-~~~l~~~~~v~~~w~~~~~~ 51 (464)
T 3v7d_B 9 NLKRDLITSLPFEISLKIFN-YLQ-FEDIINSLGVSQNWNKIIRK 51 (464)
T ss_dssp CCCCCHHHHSCHHHHHHHHT-TSC-HHHHHHHHTTCHHHHHHHTT
T ss_pred ccccCChHHCCHHHHHHHHh-cCC-HHHHHHHHHHHHHHHHHHcC
Confidence 34467899999999999999 997 99999999999999999876
|
| >2ifg_A High affinity nerve growth factor receptor; TRK, TRKA, receptor-ligand complex transferase; HET: NAG NDG MAN BMA; 3.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 c.10.2.7 | Back alignment and structure |
|---|
Probab=97.65 E-value=1.3e-05 Score=72.24 Aligned_cols=104 Identities=15% Similarity=0.127 Sum_probs=65.6
Q ss_pred eEecccCCCCCHHHHHHHHHhCCCCCeEecCC-CCCCCHHHHHHHHhcCCcCCeEEccCCCCCCHHHHHHHHhcCCCCCE
Q 012207 332 ELSLSKCSGVTDEELSFVVQSHKELRKLDITC-CRKITYASINSITKTCTSLTSLRMECCKLVSWEAFVLIGQQCQYLEE 410 (468)
Q Consensus 332 ~L~l~~~~~~~~~~l~~~~~~~~~L~~L~l~~-~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~ 410 (468)
.++.++.+.++. ++. +..+++|+.|+|++ |. ++.... ..+..+++|+.|+|+++ .++......+. .+++|+.
T Consensus 12 ~v~~~~~n~l~~--ip~-l~~~~~L~~L~l~~~n~-l~~~~~-~~~~~l~~L~~L~l~~N-~l~~~~~~~~~-~l~~L~~ 84 (347)
T 2ifg_A 12 GLRCTRDGALDS--LHH-LPGAENLTELYIENQQH-LQHLEL-RDLRGLGELRNLTIVKS-GLRFVAPDAFH-FTPRLSR 84 (347)
T ss_dssp CEECCSSCCCTT--TTT-SCSCSCCSEEECCSCSS-CCEECG-GGSCSCCCCSEEECCSS-CCCEECTTGGG-SCSCCCE
T ss_pred EEEcCCCCCCCc--cCC-CCCCCCeeEEEccCCCC-CCCcCh-hHhccccCCCEEECCCC-ccceeCHHHhc-CCcCCCE
Confidence 445555324443 444 55677899999986 54 443221 12346888999999884 45543222333 7888999
Q ss_pred EEccCCCCChhhHHhcccCCCCCEEeeCCCCccC
Q 012207 411 LDITENEVNDEGLKSISRCSKLSSLKLGICSNIT 444 (468)
Q Consensus 411 L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~l~ 444 (468)
|+|++|.++......+..++ |+.|++.+| .+.
T Consensus 85 L~l~~N~l~~~~~~~~~~~~-L~~l~l~~N-~~~ 116 (347)
T 2ifg_A 85 LNLSFNALESLSWKTVQGLS-LQELVLSGN-PLH 116 (347)
T ss_dssp EECCSSCCSCCCSTTTCSCC-CCEEECCSS-CCC
T ss_pred EeCCCCccceeCHHHcccCC-ceEEEeeCC-Ccc
Confidence 99999888765544444444 889999888 554
|
| >3rw6_A Nuclear RNA export factor 1; retroviral constitutive transport element (CTE), RNA recogni motif (RRM); HET: GTP CCC; 2.30A {Homo sapiens} PDB: 3rw7_A 1koo_A 1koh_A 1ft8_A 1fo1_A | Back alignment and structure |
|---|
Probab=97.52 E-value=0.00035 Score=59.30 Aligned_cols=67 Identities=19% Similarity=0.151 Sum_probs=33.7
Q ss_pred hcCCCCCEEEccCCcccChhhHHHHHhcCCccceEeecCCCCCchhHHHHhhcCCCCCeeEecCCcCC
Q 012207 249 YSCKSLKALNLSKCQNISHVGLSSLIKGADYLQQLILAYSFWVSADLSKCLHNFPMLQSIKFEDCPVA 316 (468)
Q Consensus 249 ~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~ 316 (468)
..+++|+.|+++++....-.++...+..+++|+.|+++++....-.....+..+ +|++|.+.+|++.
T Consensus 167 ~~l~~L~~L~Ls~N~l~~l~~l~~~~~~l~~L~~L~Ls~N~i~~~~~l~~l~~l-~L~~L~L~~Npl~ 233 (267)
T 3rw6_A 167 ENIPELLSLNLSNNRLYRLDDMSSIVQKAPNLKILNLSGNELKSERELDKIKGL-KLEELWLDGNSLC 233 (267)
T ss_dssp HHCTTCCEEECTTSCCCCCGGGTTHHHHSTTCCEEECTTSCCCSGGGGGGGTTS-CCSEEECTTSTTG
T ss_pred hhCCCCCEEECCCCCCCCCccchhHHhhCCCCCEEECCCCccCCchhhhhcccC-CcceEEccCCcCc
Confidence 447778888887776433223333444556666666665532221112222222 5555555555543
|
| >2ifg_A High affinity nerve growth factor receptor; TRK, TRKA, receptor-ligand complex transferase; HET: NAG NDG MAN BMA; 3.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 c.10.2.7 | Back alignment and structure |
|---|
Probab=97.39 E-value=2.7e-05 Score=70.11 Aligned_cols=104 Identities=14% Similarity=0.122 Sum_probs=60.9
Q ss_pred eeEecCC-cCChhHHHHHHHhCCCCCeEecccCCCCCHHHHHHHHHhCCCCCeEecCCCCCCCHHHHHHHHhcCCcCCeE
Q 012207 307 SIKFEDC-PVARSGIKAIGNWHGSLKELSLSKCSGVTDEELSFVVQSHKELRKLDITCCRKITYASINSITKTCTSLTSL 385 (468)
Q Consensus 307 ~L~l~~~-~~~~~~~~~l~~~~~~L~~L~l~~~~~~~~~~l~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L 385 (468)
.++..+. .++. .+. +. .+++|++|+|++++.+... ....+..+++|+.|+|++|. ++... ...+..+++|+.|
T Consensus 12 ~v~~~~~n~l~~-ip~-l~-~~~~L~~L~l~~~n~l~~~-~~~~~~~l~~L~~L~l~~N~-l~~~~-~~~~~~l~~L~~L 85 (347)
T 2ifg_A 12 GLRCTRDGALDS-LHH-LP-GAENLTELYIENQQHLQHL-ELRDLRGLGELRNLTIVKSG-LRFVA-PDAFHFTPRLSRL 85 (347)
T ss_dssp CEECCSSCCCTT-TTT-SC-SCSCCSEEECCSCSSCCEE-CGGGSCSCCCCSEEECCSSC-CCEEC-TTGGGSCSCCCEE
T ss_pred EEEcCCCCCCCc-cCC-CC-CCCCeeEEEccCCCCCCCc-ChhHhccccCCCEEECCCCc-cceeC-HHHhcCCcCCCEE
Confidence 4555655 4543 222 32 5677889999853455432 11235567889999998875 44322 1223468889999
Q ss_pred EccCCCCCCHHHHHHHHhcCCCCCEEEccCCCCC
Q 012207 386 RMECCKLVSWEAFVLIGQQCQYLEELDITENEVN 419 (468)
Q Consensus 386 ~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~ 419 (468)
+|+++ .++.... .....++ |+.|++.+|.+.
T Consensus 86 ~l~~N-~l~~~~~-~~~~~~~-L~~l~l~~N~~~ 116 (347)
T 2ifg_A 86 NLSFN-ALESLSW-KTVQGLS-LQELVLSGNPLH 116 (347)
T ss_dssp ECCSS-CCSCCCS-TTTCSCC-CCEEECCSSCCC
T ss_pred eCCCC-ccceeCH-HHcccCC-ceEEEeeCCCcc
Confidence 99884 3442211 1221333 889999888765
|
| >1p22_A F-BOX/WD-repeat protein 1A; ubiquitination, degradation, signaling protein; HET: SEP; 2.95A {Homo sapiens} SCOP: a.158.1.1 b.69.4.1 | Back alignment and structure |
|---|
Probab=97.39 E-value=5.9e-05 Score=70.27 Aligned_cols=43 Identities=21% Similarity=0.288 Sum_probs=38.7
Q ss_pred cCCCCcccCcHH----HHHHHHhhhcCChhhhhHHhhhhhhHHHHHHhh
Q 012207 7 KNSNPFDFLSEE----IIFNILDHLNNDPFARKSFSLTCRNFYSIESRH 51 (468)
Q Consensus 7 ~~~~~~~~LP~e----il~~I~~~~l~~~~~~~~~~~v~~~w~~~~~~~ 51 (468)
-..+++..||+| |+.+||+ ||+ .+++.++++|||+|++++...
T Consensus 6 ~~~d~~~~lp~e~~~~~~~~i~~-~l~-~~~l~~~~~v~~~w~~~~~~~ 52 (435)
T 1p22_A 6 LQRDFITALPARGLDHIAENILS-YLD-AKSLCAAELVCKEWYRVTSDG 52 (435)
T ss_dssp SCCCHHHHTGGGTCHHHHHHHHT-TCC-HHHHHHHHHHCHHHHHHHHHT
T ss_pred hhcChHHHCCcchHHHHHHHHHh-cCC-HHHHHHHHHHHHHHHHHhcCh
Confidence 346889999999 9999999 997 999999999999999988653
|
| >2ovr_B FBW7, F-BOX/WD repeat protein 7, F-box PROT; WD40 domains, double phosphorylation, transcription-C complex; HET: TPO; 2.50A {Homo sapiens} SCOP: a.158.1.1 b.69.4.1 PDB: 2ovp_B* 2ovq_B* | Back alignment and structure |
|---|
Probab=97.36 E-value=0.00011 Score=68.64 Aligned_cols=42 Identities=17% Similarity=0.283 Sum_probs=38.1
Q ss_pred cCCCCcccCcHHHHHHHHhhhcCChhhhhHHhhhhhhHHHHHHh
Q 012207 7 KNSNPFDFLSEEIIFNILDHLNNDPFARKSFSLTCRNFYSIESR 50 (468)
Q Consensus 7 ~~~~~~~~LP~eil~~I~~~~l~~~~~~~~~~~v~~~w~~~~~~ 50 (468)
...+++..||+|++.+||+ ||+ +.|+.+++.|||+|+.++..
T Consensus 14 ~~~d~~~~lp~e~~~~i~~-~l~-~~~l~~~~~v~~~~~~~~~~ 55 (445)
T 2ovr_B 14 FQRDFISLLPKELALYVLS-FLE-PKDLLQAAQTCRYWRILAED 55 (445)
T ss_dssp CCCSTTTSSCHHHHHHHHT-TSC-HHHHHHHTTSCHHHHHHHTC
T ss_pred ccCChhHHCCHHHHHHHHH-hCC-HHHHHHHHHHhHHHHhhcCc
Confidence 3467899999999999999 997 99999999999999998754
|
| >4h09_A Hypothetical leucine rich repeat protein; two LRR_5 domains, PF13306 family, structural genomics, JOIN for structural genomics, JCSG; 2.50A {Eubacterium ventriosum} | Back alignment and structure |
|---|
Probab=96.69 E-value=2.2e-05 Score=71.62 Aligned_cols=128 Identities=16% Similarity=0.245 Sum_probs=68.2
Q ss_pred hhcCCCCCeeEecCCc--CChhHHHHHHHhCCCCCeEecccCCCCCHHHHHHHHHhCCCCCeEecCCCCCCCHHHHHHHH
Q 012207 299 LHNFPMLQSIKFEDCP--VARSGIKAIGNWHGSLKELSLSKCSGVTDEELSFVVQSHKELRKLDITCCRKITYASINSIT 376 (468)
Q Consensus 299 l~~~~~L~~L~l~~~~--~~~~~~~~l~~~~~~L~~L~l~~~~~~~~~~l~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~ 376 (468)
+..+.+|+.+.+...- +....+ ..+..|+.+.+... ++..+ ...+..+.+|+.+.+... +...+. ...
T Consensus 213 f~~~~~l~~i~~~~~~~~i~~~~f----~~~~~L~~i~lp~~--v~~I~-~~aF~~~~~l~~i~l~~~--i~~i~~-~aF 282 (379)
T 4h09_A 213 FSYGKNLKKITITSGVTTLGDGAF----YGMKALDEIAIPKN--VTSIG-SFLLQNCTALKTLNFYAK--VKTVPY-LLC 282 (379)
T ss_dssp TTTCSSCSEEECCTTCCEECTTTT----TTCSSCCEEEECTT--CCEEC-TTTTTTCTTCCEEEECCC--CSEECT-TTT
T ss_pred cccccccceeeeccceeEEccccc----cCCccceEEEcCCC--ccEeC-ccccceeehhcccccccc--ceeccc-ccc
Confidence 3455677777765431 211111 15677888777542 22111 112345677888777532 221111 112
Q ss_pred hcCCcCCeEEccCCCCCCHHHHHHHHhcCCCCCEEEccCCCCChhhHHhcccCCCCCEEeeCC
Q 012207 377 KTCTSLTSLRMECCKLVSWEAFVLIGQQCQYLEELDITENEVNDEGLKSISRCSKLSSLKLGI 439 (468)
Q Consensus 377 ~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~ 439 (468)
..|.+|+.+.+.+. .++.-+-..+. +|++|+.+.+..+ ++..+..++..|++|+.+.+..
T Consensus 283 ~~c~~L~~i~l~~~-~i~~I~~~aF~-~c~~L~~i~lp~~-l~~I~~~aF~~C~~L~~i~ip~ 342 (379)
T 4h09_A 283 SGCSNLTKVVMDNS-AIETLEPRVFM-DCVKLSSVTLPTA-LKTIQVYAFKNCKALSTISYPK 342 (379)
T ss_dssp TTCTTCCEEEECCT-TCCEECTTTTT-TCTTCCEEECCTT-CCEECTTTTTTCTTCCCCCCCT
T ss_pred cccccccccccccc-ccceehhhhhc-CCCCCCEEEcCcc-ccEEHHHHhhCCCCCCEEEECC
Confidence 35788888887642 23222222222 7788888888643 5555556677788888887753
|
| >4h09_A Hypothetical leucine rich repeat protein; two LRR_5 domains, PF13306 family, structural genomics, JOIN for structural genomics, JCSG; 2.50A {Eubacterium ventriosum} | Back alignment and structure |
|---|
Probab=93.19 E-value=0.0082 Score=54.48 Aligned_cols=150 Identities=17% Similarity=0.241 Sum_probs=81.6
Q ss_pred cCCCCcEEEccCCCccCHHHHHHHHcCCCCCeEeccCCcccChHhHHHHHhcCCCCcEEeccCCCCCChHHHHHHHhhCC
Q 012207 123 NCRFLTEIDLSNGTEMGDAAAAAIAEAKNLERLWLARCKLITDLGIGRIAACCRKLKLLCLKWCIRVTDLGVELVALKCQ 202 (468)
Q Consensus 123 ~~~~L~~L~l~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~ 202 (468)
.+..+..+.+.... ......++..+.+|+.+.+... +...+..++. .|..|+.+.+... ++..+- .....|.
T Consensus 192 ~~~~~~~~~~~~~~--~~i~~~~f~~~~~l~~i~~~~~--~~~i~~~~f~-~~~~L~~i~lp~~--v~~I~~-~aF~~~~ 263 (379)
T 4h09_A 192 AAKTGTEFTIPSTV--KTVTAYGFSYGKNLKKITITSG--VTTLGDGAFY-GMKALDEIAIPKN--VTSIGS-FLLQNCT 263 (379)
T ss_dssp TTCCCSEEECCTTC--CEECTTTTTTCSSCSEEECCTT--CCEECTTTTT-TCSSCCEEEECTT--CCEECT-TTTTTCT
T ss_pred ccccccccccccce--eEEeecccccccccceeeeccc--eeEEcccccc-CCccceEEEcCCC--ccEeCc-cccceee
Confidence 34556666655432 1112234455677887777542 2222222222 2778888887642 222211 1223678
Q ss_pred CccEeeecccCCCCCCccccccCCCCCeeeecCCCCCChHHHHHHHhcCCCCCEEEccCC-cccChhhHHHHHhcCCccc
Q 012207 203 EIRTLDLSYLPITEKCLPPVVKLQYLEDLVLEGCHGIDDDGLASVEYSCKSLKALNLSKC-QNISHVGLSSLIKGADYLQ 281 (468)
Q Consensus 203 ~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~~L~~L~l~~~-~~~~~~~~~~~~~~~~~L~ 281 (468)
+|+.+.+... +.......+..+.+|+.+.+.+ ..+...+-.++.. |.+|+.+.+... ..+.+. .+..|.+|+
T Consensus 264 ~l~~i~l~~~-i~~i~~~aF~~c~~L~~i~l~~-~~i~~I~~~aF~~-c~~L~~i~lp~~l~~I~~~----aF~~C~~L~ 336 (379)
T 4h09_A 264 ALKTLNFYAK-VKTVPYLLCSGCSNLTKVVMDN-SAIETLEPRVFMD-CVKLSSVTLPTALKTIQVY----AFKNCKALS 336 (379)
T ss_dssp TCCEEEECCC-CSEECTTTTTTCTTCCEEEECC-TTCCEECTTTTTT-CTTCCEEECCTTCCEECTT----TTTTCTTCC
T ss_pred hhcccccccc-ceeccccccccccccccccccc-cccceehhhhhcC-CCCCCEEEcCccccEEHHH----HhhCCCCCC
Confidence 8888888643 3222334456778888888865 2333333233444 888888888643 223322 255678888
Q ss_pred eEeecC
Q 012207 282 QLILAY 287 (468)
Q Consensus 282 ~L~l~~ 287 (468)
++.+..
T Consensus 337 ~i~ip~ 342 (379)
T 4h09_A 337 TISYPK 342 (379)
T ss_dssp CCCCCT
T ss_pred EEEECC
Confidence 887754
|
| >3rfe_A Platelet glycoprotein IB beta chain; platelet surface receptor, GPIX, cell adhesion; HET: NAG; 1.25A {Homo sapiens} PDB: 3rez_A* | Back alignment and structure |
|---|
Probab=91.30 E-value=0.13 Score=38.13 Aligned_cols=37 Identities=19% Similarity=0.093 Sum_probs=25.2
Q ss_pred CCCEEEccCCCCChhhHHhcccCCCCCEEeeCCCCcc
Q 012207 407 YLEELDITENEVNDEGLKSISRCSKLSSLKLGICSNI 443 (468)
Q Consensus 407 ~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~l 443 (468)
+|+.|+|++|.++......+..+++|+.|+|.+|+-.
T Consensus 32 ~l~~L~Ls~N~l~~l~~~~f~~l~~L~~L~L~~NP~~ 68 (130)
T 3rfe_A 32 DTTELVLTGNNLTALPPGLLDALPALRTAHLGANPWR 68 (130)
T ss_dssp TCSEEECTTSCCSSCCTTTGGGCTTCCEEECCSSCCB
T ss_pred CCCEEECCCCcCCccChhhhhhccccCEEEecCCCee
Confidence 5777777777776665555666777777777777443
|
| >3rfe_A Platelet glycoprotein IB beta chain; platelet surface receptor, GPIX, cell adhesion; HET: NAG; 1.25A {Homo sapiens} PDB: 3rez_A* | Back alignment and structure |
|---|
Probab=82.22 E-value=2 Score=31.56 Aligned_cols=37 Identities=16% Similarity=-0.078 Sum_probs=22.7
Q ss_pred CCccEeeecccCCCCCCccccccCCCCCeeeecCCCC
Q 012207 202 QEIRTLDLSYLPITEKCLPPVVKLQYLEDLVLEGCHG 238 (468)
Q Consensus 202 ~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~ 238 (468)
++|+.|+|++|.++.-....+..+++|+.|++.++..
T Consensus 31 ~~l~~L~Ls~N~l~~l~~~~f~~l~~L~~L~L~~NP~ 67 (130)
T 3rfe_A 31 VDTTELVLTGNNLTALPPGLLDALPALRTAHLGANPW 67 (130)
T ss_dssp TTCSEEECTTSCCSSCCTTTGGGCTTCCEEECCSSCC
T ss_pred cCCCEEECCCCcCCccChhhhhhccccCEEEecCCCe
Confidence 3577777777766554444555566666666666443
|
Homologous Structure Domains
Structure Domains Detected by RPS-BLAST
Original result of RPS-BLAST against SCOP70(version1.75) database
| ID | Alignment Graph | Length |
Definition |
E-value |
| 468 | ||||
| d1z7xw1 | 460 | c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human ( | 8e-06 | |
| d1z7xw1 | 460 | c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human ( | 4e-05 | |
| d1z7xw1 | 460 | c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human ( | 1e-04 | |
| d2astb2 | 284 | c.10.1.3 (B:2136-2419) Cyclin A/CDK2-associated p1 | 2e-05 | |
| d2astb2 | 284 | c.10.1.3 (B:2136-2419) Cyclin A/CDK2-associated p1 | 8e-04 |
| >d1z7xw1 c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (Homo sapiens) [TaxId: 9606]} Length = 460 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: RNI-like family: 28-residue LRR domain: Ribonuclease inhibitor species: Human (Homo sapiens) [TaxId: 9606]
Score = 45.7 bits (106), Expect = 8e-06
Identities = 17/85 (20%), Positives = 37/85 (43%), Gaps = 3/85 (3%)
Query: 355 ELRKLDITCCRKITYASINSITKTCTSLTSLRMECCKL--VSWEAFVLIGQQCQYLEELD 412
+++ LDI C +++ A + +R++ C L + + L EL+
Sbjct: 3 DIQSLDIQCE-ELSDARWAELLPLLQQCQVVRLDDCGLTEARCKDISSALRVNPALAELN 61
Query: 413 ITENEVNDEGLKSISRCSKLSSLKL 437
+ NE+ D G+ + + + S K+
Sbjct: 62 LRSNELGDVGVHCVLQGLQTPSCKI 86
|
| >d1z7xw1 c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (Homo sapiens) [TaxId: 9606]} Length = 460 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: RNI-like family: 28-residue LRR domain: Ribonuclease inhibitor species: Human (Homo sapiens) [TaxId: 9606]
Score = 43.4 bits (100), Expect = 4e-05
Identities = 21/119 (17%), Positives = 49/119 (41%), Gaps = 10/119 (8%)
Query: 203 EIRTLDLSYLPITEKCLPPVVK-LQYLEDLVLEGCHGIDDDG---LASVEYSCKSLKALN 258
+I++LD+ +++ ++ LQ + + L+ C G+ + ++S +L LN
Sbjct: 3 DIQSLDIQCEELSDARWAELLPLLQQCQVVRLDDC-GLTEARCKDISSALRVNPALAELN 61
Query: 259 LSKCQNISHVGLSSLIKGADY----LQQLILAYSFWVSADLSKCLHNFPMLQSIKFEDC 313
L + + VG+ +++G +Q+L L A L +++
Sbjct: 62 LRSNE-LGDVGVHCVLQGLQTPSCKIQKLSLQNCCLTGAGCGVLSSTLRTLPTLQELHL 119
|
| >d1z7xw1 c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (Homo sapiens) [TaxId: 9606]} Length = 460 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: RNI-like family: 28-residue LRR domain: Ribonuclease inhibitor species: Human (Homo sapiens) [TaxId: 9606]
Score = 41.9 bits (96), Expect = 1e-04
Identities = 48/407 (11%), Positives = 96/407 (23%), Gaps = 16/407 (3%)
Query: 73 ITQLDLSLCPRANDDALSIVSSSSWKLTLRSINLSRSRL---FTKVGLSSLTVNCRFLTE 129
+ L C I S+ L +NL + L L L + +
Sbjct: 29 CQVVRLDDCGLTEARCKDISSALRVNPALAELNLRSNELGDVGVHCVLQGLQTPSCKIQK 88
Query: 130 IDLSNGTEMGDAAAAAIAEAKNLERLWLARCKLITDLGIGRIAACCRKLKLLCLKWCIRV 189
+ L N G + + L L G C L C +++
Sbjct: 89 LSLQNCCLTGAGCGVLSSTLRTLPTLQELHLSDNLLGDAGLQLLCEGLLDPQCRLEKLQL 148
Query: 190 TDLGVELVALKCQEIRTLDLSYLPITEKCLPPVVKLQYLEDLVLEGCHGIDDDGLASVEY 249
+ + + + + + L
Sbjct: 149 EYCSLSAASCEPLASVLRAKPDFKELTVSNNDINEAGVRVLCQGLKDSPCQLEALKLESC 208
Query: 250 SCKSLKALNLSKCQNISHVGLSSLIKGADYLQQLILAYSFWVSADLSKCLHNFPMLQSIK 309
S +L + + + S+ + I
Sbjct: 209 GVTSDNCRDLCGIVASKASLRELALGSNKLGDVGMAELCPGLLHPSSRLRTLWIWECGIT 268
Query: 310 FEDCPVARSGIKAIGNWHGSLKELSLSKCSGVTDEELSFVVQSHKELRKLDITCCRKITY 369
+ C ++A + + G + + + +C
Sbjct: 269 AKGCGDLCRVLRAKESLKELSLAGNELGDEGARLLCETLLEPGCQLESLWVKSCSFTAAC 328
Query: 370 ASINS----ITKTCTSLTSLRMECCKLVSWEAFVLIGQQCQYLEELDITENEVNDEGLKS 425
S S + L E +GQ L L + + +V+D S
Sbjct: 329 CSHFSSVLAQNRFLLELQISNNRLEDAGVRELCQGLGQPGSVLRVLWLADCDVSDSSCSS 388
Query: 426 I----SRCSKLSSLKLGICSNITDEGLKHVGST----CSMLKELDLY 464
+ L L L + + D G+ + + +L++L LY
Sbjct: 389 LAATLLANHSLRELDLS-NNCLGDAGILQLVESVRQPGCLLEQLVLY 434
|
| >d2astb2 c.10.1.3 (B:2136-2419) Cyclin A/CDK2-associated p19, Skp2 {Human (Homo sapiens) [TaxId: 9606]} Length = 284 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: RNI-like family: Cyclin A/CDK2-associated p19, Skp2 domain: Cyclin A/CDK2-associated p19, Skp2 species: Human (Homo sapiens) [TaxId: 9606]
Score = 43.9 bits (102), Expect = 2e-05
Identities = 37/188 (19%), Positives = 79/188 (42%), Gaps = 5/188 (2%)
Query: 280 LQQLILAYSFWVSADLSKCLHNFPMLQSIKFEDCPVARSGIKAIGNWHGSLKELSLSKCS 339
+Q + L+ S + L L LQ++ E ++ + + + +L L+LS CS
Sbjct: 48 VQHMDLSNSVIEVSTLHGILSQCSKLQNLSLEGLRLSDPIVNTLAK-NSNLVRLNLSGCS 106
Query: 340 GVTDEELSFVVQSHKELRKLDITCCRKITYASINSITKTCTSLTSLRM--ECCKLVSWEA 397
G ++ L ++ S L +L+++ C T + + + K +
Sbjct: 107 GFSEFALQTLLSSCSRLDELNLSWCFDFTEKHVQVAVAHVSETITQLNLSGYRKNLQKSD 166
Query: 398 FVLIGQQCQYLEELDITENE-VNDEGLKSISRCSKLSSLKLGICSNITDEGLKHVGSTCS 456
+ ++C L LD++++ + ++ + + + L L L C +I E L +G
Sbjct: 167 LSTLVRRCPNLVHLDLSDSVMLKNDCFQEFFQLNYLQHLSLSRCYDIIPETLLELGE-IP 225
Query: 457 MLKELDLY 464
LK L ++
Sbjct: 226 TLKTLQVF 233
|
| >d2astb2 c.10.1.3 (B:2136-2419) Cyclin A/CDK2-associated p19, Skp2 {Human (Homo sapiens) [TaxId: 9606]} Length = 284 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: RNI-like family: Cyclin A/CDK2-associated p19, Skp2 domain: Cyclin A/CDK2-associated p19, Skp2 species: Human (Homo sapiens) [TaxId: 9606]
Score = 38.9 bits (89), Expect = 8e-04
Identities = 35/243 (14%), Positives = 76/243 (31%), Gaps = 13/243 (5%)
Query: 74 TQLDLSLCPRANDDALSIVSSSSWKLTLRSINLSRSRLFTKVGLSSLTVNCRFLTEIDLS 133
LDL+ ++ + +L + + R + + + +DLS
Sbjct: 3 QTLDLTGK--------NLHPDVTGRLLSQGVIAFRCPRSFMDQPLAEHFSPFRVQHMDLS 54
Query: 134 NGTEMGDAAAAAIAEAKNLERLWLARCKLITDLGIGRIAACCRKLKLLCLKWCIRVTDLG 193
N +++ L+ L L + ++D + +A L L L C ++
Sbjct: 55 NSVIEVSTLHGILSQCSKLQNLSLEGLR-LSDPIVNTLAKNS-NLVRLNLSGCSGFSEFA 112
Query: 194 VELVALKCQEIRTLDLSYLPITEKCLPPV---VKLQYLEDLVLEGCHGIDDDGLASVEYS 250
++ + C + L+LS+ + V + + L L G S
Sbjct: 113 LQTLLSSCSRLDELNLSWCFDFTEKHVQVAVAHVSETITQLNLSGYRKNLQKSDLSTLVR 172
Query: 251 CKSLKALNLSKCQNISHVGLSSLIKGADYLQQLILAYSFWVSADLSKCLHNFPMLQSIKF 310
+ +YLQ L L+ + + + L P L++++
Sbjct: 173 RCPNLVHLDLSDSVMLKNDCFQEFFQLNYLQHLSLSRCYDIIPETLLELGEIPTLKTLQV 232
Query: 311 EDC 313
Sbjct: 233 FGI 235
|
Homologous Domains Detected by HHsearch
Original result of HHsearch against SCOP70(version1.75) database
| ID | Alignment Graph | Length |
Definition |
Probability |
| Query | 468 | |||
| d2astb2 | 284 | Cyclin A/CDK2-associated p19, Skp2 {Human (Homo sa | 99.92 | |
| d2astb2 | 284 | Cyclin A/CDK2-associated p19, Skp2 {Human (Homo sa | 99.91 | |
| d1z7xw1 | 460 | Ribonuclease inhibitor {Human (Homo sapiens) [TaxI | 99.88 | |
| d1z7xw1 | 460 | Ribonuclease inhibitor {Human (Homo sapiens) [TaxI | 99.86 | |
| d2ca6a1 | 344 | Rna1p (RanGAP1), N-terminal domain {Fission yeast | 99.73 | |
| d2ca6a1 | 344 | Rna1p (RanGAP1), N-terminal domain {Fission yeast | 99.7 | |
| d2omza2 | 384 | Internalin A {Listeria monocytogenes [TaxId: 1639] | 99.7 | |
| d2omza2 | 384 | Internalin A {Listeria monocytogenes [TaxId: 1639] | 99.6 | |
| d1ogqa_ | 313 | Polygalacturonase inhibiting protein PGIP {Kidney | 99.44 | |
| d1xkua_ | 305 | Decorin {Cow (Bos taurus) [TaxId: 9913]} | 99.41 | |
| d1ogqa_ | 313 | Polygalacturonase inhibiting protein PGIP {Kidney | 99.38 | |
| d1xkua_ | 305 | Decorin {Cow (Bos taurus) [TaxId: 9913]} | 99.34 | |
| d1h6ua2 | 227 | Internalin H {Listeria monocytogenes [TaxId: 1639] | 99.33 | |
| d1ozna_ | 284 | Reticulon 4 receptor (Nogo-66 receptor, Ngr) {Huma | 99.32 | |
| d1p9ag_ | 266 | von Willebrand factor binding domain of glycoprote | 99.29 | |
| d2omxa2 | 199 | Internalin B {Listeria monocytogenes [TaxId: 1639] | 99.28 | |
| d1ozna_ | 284 | Reticulon 4 receptor (Nogo-66 receptor, Ngr) {Huma | 99.27 | |
| d1h6ua2 | 227 | Internalin H {Listeria monocytogenes [TaxId: 1639] | 99.26 | |
| d1fs1a1 | 41 | Skp2 {Human (Homo sapiens) [TaxId: 9606]} | 99.26 | |
| d1h6ta2 | 210 | Internalin B {Listeria monocytogenes [TaxId: 1639] | 99.21 | |
| d1h6ta2 | 210 | Internalin B {Listeria monocytogenes [TaxId: 1639] | 99.17 | |
| d2omxa2 | 199 | Internalin B {Listeria monocytogenes [TaxId: 1639] | 99.17 | |
| d1p9ag_ | 266 | von Willebrand factor binding domain of glycoprote | 99.05 | |
| d1a9na_ | 162 | Splicesomal U2A' protein {Human (Homo sapiens) [Ta | 98.97 | |
| d1jl5a_ | 353 | Leucine rich effector protein YopM {Yersinia pesti | 98.95 | |
| d1pgva_ | 167 | Tropomodulin C-terminal domain {nematode (Caenorha | 98.92 | |
| d1io0a_ | 166 | Tropomodulin C-terminal domain {Chicken (Gallus ga | 98.89 | |
| d1xwdc1 | 242 | Follicle-stimulating hormone receptor {Human (Homo | 98.83 | |
| d1nexb1 | 100 | Cdc4 F-box and linker domains {Baker's yeast (Sacc | 98.82 | |
| d1jl5a_ | 353 | Leucine rich effector protein YopM {Yersinia pesti | 98.82 | |
| d1pgva_ | 167 | Tropomodulin C-terminal domain {nematode (Caenorha | 98.82 | |
| d1a9na_ | 162 | Splicesomal U2A' protein {Human (Homo sapiens) [Ta | 98.79 | |
| d1dcea3 | 124 | Rab geranylgeranyltransferase alpha-subunit, C-ter | 98.76 | |
| d1dcea3 | 124 | Rab geranylgeranyltransferase alpha-subunit, C-ter | 98.75 | |
| d1m9la_ | 198 | Outer arm dynein light chain 1 {Green algae (Chlam | 98.75 | |
| d1io0a_ | 166 | Tropomodulin C-terminal domain {Chicken (Gallus ga | 98.74 | |
| d2ovrb1 | 102 | F-box/WD repeat-containing protein 7, FBXW7 {Human | 98.66 | |
| d1w8aa_ | 192 | Slit {Fruit fly (Drosophila melanogaster) [TaxId: | 98.64 | |
| d1m9la_ | 198 | Outer arm dynein light chain 1 {Green algae (Chlam | 98.61 | |
| d1xwdc1 | 242 | Follicle-stimulating hormone receptor {Human (Homo | 98.55 | |
| d1p22a1 | 118 | F-box/WD-repeat protein 1 (beta-TRCP1) {Human (Hom | 98.34 | |
| d1w8aa_ | 192 | Slit {Fruit fly (Drosophila melanogaster) [TaxId: | 98.33 | |
| d2ifga3 | 156 | High affinity nerve growth factor receptor, N-term | 98.2 | |
| d1koha1 | 162 | mRNA export factor tap {Human (Homo sapiens) [TaxI | 98.0 | |
| d2ifga3 | 156 | High affinity nerve growth factor receptor, N-term | 97.75 | |
| d1koha1 | 162 | mRNA export factor tap {Human (Homo sapiens) [TaxI | 97.52 |
| >d2astb2 c.10.1.3 (B:2136-2419) Cyclin A/CDK2-associated p19, Skp2 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: RNI-like family: Cyclin A/CDK2-associated p19, Skp2 domain: Cyclin A/CDK2-associated p19, Skp2 species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.92 E-value=9.9e-24 Score=182.90 Aligned_cols=205 Identities=18% Similarity=0.287 Sum_probs=178.1
Q ss_pred CCCCCEEEccCCcccChhhHHHHHhcCCccceEeecCCCCCchhHHHHhhcCCCCCeeEecCC-cCChhHHHHHHHhCCC
Q 012207 251 CKSLKALNLSKCQNISHVGLSSLIKGADYLQQLILAYSFWVSADLSKCLHNFPMLQSIKFEDC-PVARSGIKAIGNWHGS 329 (468)
Q Consensus 251 ~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~L~~L~l~~~-~~~~~~~~~l~~~~~~ 329 (468)
..+|++|+++++. +.+..+..++..+++|++|++++| .+.+.....+..+++|++|++++| .+++.++..++..+++
T Consensus 45 ~~~L~~LdLs~~~-i~~~~l~~l~~~c~~L~~L~L~~~-~l~~~~~~~l~~~~~L~~L~Ls~c~~itd~~l~~l~~~~~~ 122 (284)
T d2astb2 45 PFRVQHMDLSNSV-IEVSTLHGILSQCSKLQNLSLEGL-RLSDPIVNTLAKNSNLVRLNLSGCSGFSEFALQTLLSSCSR 122 (284)
T ss_dssp CBCCCEEECTTCE-ECHHHHHHHHTTBCCCSEEECTTC-BCCHHHHHHHTTCTTCSEEECTTCBSCCHHHHHHHHHHCTT
T ss_pred CCCCCEEECCCCc-cCHHHHHHHHHhCCCccccccccc-CCCcHHHHHHhcCCCCcCccccccccccccccchhhHHHHh
Confidence 5689999999875 677778888999999999999998 577788888899999999999997 5888888888888999
Q ss_pred CCeEecccCCCCCHHHHHHHHHh-CCCCCeEecCCC-CCCCHHHHHHHHhcCCcCCeEEccCCCCCCHHHHHHHHhcCCC
Q 012207 330 LKELSLSKCSGVTDEELSFVVQS-HKELRKLDITCC-RKITYASINSITKTCTSLTSLRMECCKLVSWEAFVLIGQQCQY 407 (468)
Q Consensus 330 L~~L~l~~~~~~~~~~l~~~~~~-~~~L~~L~l~~~-~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~ 407 (468)
|++|++++|..+++.++...+.. +++|+.|++++| ..+++.++..++.++|+|++|++++|..+++.++..+. .+++
T Consensus 123 L~~L~ls~c~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~i~~~~l~~l~~~~~~L~~L~L~~~~~itd~~~~~l~-~~~~ 201 (284)
T d2astb2 123 LDELNLSWCFDFTEKHVQVAVAHVSETITQLNLSGYRKNLQKSDLSTLVRRCPNLVHLDLSDSVMLKNDCFQEFF-QLNY 201 (284)
T ss_dssp CCEEECCCCTTCCHHHHHHHHHHSCTTCCEEECCSCGGGSCHHHHHHHHHHCTTCSEEECTTCTTCCGGGGGGGG-GCTT
T ss_pred ccccccccccccccccchhhhcccccccchhhhcccccccccccccccccccccccccccccccCCCchhhhhhc-ccCc
Confidence 99999999989998887665544 579999999987 45888899888889999999999999999998888887 7899
Q ss_pred CCEEEccCC-CCChhhHHhcccCCCCCEEeeCCCCccCHHHHHHHHhcCcccCe
Q 012207 408 LEELDITEN-EVNDEGLKSISRCSKLSSLKLGICSNITDEGLKHVGSTCSMLKE 460 (468)
Q Consensus 408 L~~L~l~~~-~~~~~~~~~l~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~~L~~ 460 (468)
|++|++++| .+++.++..++++|+|+.|++.+| +++.++..+...+|+|+.
T Consensus 202 L~~L~L~~C~~i~~~~l~~L~~~~~L~~L~l~~~--~~d~~l~~l~~~lp~L~i 253 (284)
T d2astb2 202 LQHLSLSRCYDIIPETLLELGEIPTLKTLQVFGI--VPDGTLQLLKEALPHLQI 253 (284)
T ss_dssp CCEEECTTCTTCCGGGGGGGGGCTTCCEEECTTS--SCTTCHHHHHHHSTTSEE
T ss_pred CCEEECCCCCCCChHHHHHHhcCCCCCEEeeeCC--CCHHHHHHHHHhCccccc
Confidence 999999996 799998888999999999999988 677788888888888763
|
| >d2astb2 c.10.1.3 (B:2136-2419) Cyclin A/CDK2-associated p19, Skp2 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: RNI-like family: Cyclin A/CDK2-associated p19, Skp2 domain: Cyclin A/CDK2-associated p19, Skp2 species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.91 E-value=1.9e-23 Score=181.08 Aligned_cols=231 Identities=19% Similarity=0.285 Sum_probs=184.8
Q ss_pred CeeeecCCCCCChHHHHHHHhcCCCCCEEEccCCcccChhhHHHHHhcCCccceEeecCCCCCchhHHHHhhcCCCCCee
Q 012207 229 EDLVLEGCHGIDDDGLASVEYSCKSLKALNLSKCQNISHVGLSSLIKGADYLQQLILAYSFWVSADLSKCLHNFPMLQSI 308 (468)
Q Consensus 229 ~~L~l~~~~~~~~~~~~~l~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~L~~L 308 (468)
+.+++++ ..+....+..+.. ..+..+.+..... .... .......+|++|+++++......+...+..+++|++|
T Consensus 3 ~~lDLs~-~~l~~~~l~~l~~--~~~~~lrl~~~~~-~~~~--~~~~~~~~L~~LdLs~~~i~~~~l~~l~~~c~~L~~L 76 (284)
T d2astb2 3 QTLDLTG-KNLHPDVTGRLLS--QGVIAFRCPRSFM-DQPL--AEHFSPFRVQHMDLSNSVIEVSTLHGILSQCSKLQNL 76 (284)
T ss_dssp SEEECTT-CBCCHHHHHHHHH--TTCSEEECTTCEE-CSCC--CSCCCCBCCCEEECTTCEECHHHHHHHHTTBCCCSEE
T ss_pred CEEECCC-CCCCchHHHHHHh--ccceEeecccccc-ccch--hhhccCCCCCEEECCCCccCHHHHHHHHHhCCCcccc
Confidence 4567776 3455444444443 2344555543321 1100 0012346899999999854444556678899999999
Q ss_pred EecCCcCChhHHHHHHHhCCCCCeEecccCCCCCHHHHHHHHHhCCCCCeEecCCCCCCCHHHHHHHHh-cCCcCCeEEc
Q 012207 309 KFEDCPVARSGIKAIGNWHGSLKELSLSKCSGVTDEELSFVVQSHKELRKLDITCCRKITYASINSITK-TCTSLTSLRM 387 (468)
Q Consensus 309 ~l~~~~~~~~~~~~l~~~~~~L~~L~l~~~~~~~~~~l~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~-~~~~L~~L~l 387 (468)
++.+|.+++..+..++ .+++|++|++++|..+++.++..++.++++|++|++++|..+++.++..... .+++|+.|++
T Consensus 77 ~L~~~~l~~~~~~~l~-~~~~L~~L~Ls~c~~itd~~l~~l~~~~~~L~~L~ls~c~~~~~~~~~~~~~~~~~~L~~L~l 155 (284)
T d2astb2 77 SLEGLRLSDPIVNTLA-KNSNLVRLNLSGCSGFSEFALQTLLSSCSRLDELNLSWCFDFTEKHVQVAVAHVSETITQLNL 155 (284)
T ss_dssp ECTTCBCCHHHHHHHT-TCTTCSEEECTTCBSCCHHHHHHHHHHCTTCCEEECCCCTTCCHHHHHHHHHHSCTTCCEEEC
T ss_pred cccccCCCcHHHHHHh-cCCCCcCccccccccccccccchhhHHHHhccccccccccccccccchhhhcccccccchhhh
Confidence 9999999999998887 6899999999999999999999999999999999999999999988765444 5689999999
Q ss_pred cCC-CCCCHHHHHHHHhcCCCCCEEEccCC-CCChhhHHhcccCCCCCEEeeCCCCccCHHHHHHHHhcCcccCeeecCC
Q 012207 388 ECC-KLVSWEAFVLIGQQCQYLEELDITEN-EVNDEGLKSISRCSKLSSLKLGICSNITDEGLKHVGSTCSMLKELDLYR 465 (468)
Q Consensus 388 ~~~-~~~~~~~~~~~~~~~~~L~~L~l~~~-~~~~~~~~~l~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~~L~~L~l~~ 465 (468)
++| ..+++.++..+...||+|++|++++| .+++.++..+.++++|++|++++|..+++.++..+. .+|+|+.|++.+
T Consensus 156 ~~~~~~i~~~~l~~l~~~~~~L~~L~L~~~~~itd~~~~~l~~~~~L~~L~L~~C~~i~~~~l~~L~-~~~~L~~L~l~~ 234 (284)
T d2astb2 156 SGYRKNLQKSDLSTLVRRCPNLVHLDLSDSVMLKNDCFQEFFQLNYLQHLSLSRCYDIIPETLLELG-EIPTLKTLQVFG 234 (284)
T ss_dssp CSCGGGSCHHHHHHHHHHCTTCSEEECTTCTTCCGGGGGGGGGCTTCCEEECTTCTTCCGGGGGGGG-GCTTCCEEECTT
T ss_pred cccccccccccccccccccccccccccccccCCCchhhhhhcccCcCCEEECCCCCCCChHHHHHHh-cCCCCCEEeeeC
Confidence 997 46899999999889999999999997 799999899999999999999999899998887765 799999999999
Q ss_pred CC
Q 012207 466 FS 467 (468)
Q Consensus 466 c~ 467 (468)
|-
T Consensus 235 ~~ 236 (284)
T d2astb2 235 IV 236 (284)
T ss_dssp SS
T ss_pred CC
Confidence 83
|
| >d1z7xw1 c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: RNI-like family: 28-residue LRR domain: Ribonuclease inhibitor species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.88 E-value=2.2e-19 Score=167.97 Aligned_cols=379 Identities=20% Similarity=0.232 Sum_probs=177.1
Q ss_pred CCcEEecCCCCCCChhHHHhhhcccccCCccEEecCCCCcccHHHHHHh---hhcCCCCcEEEccCCCccCHHHHHHHHc
Q 012207 72 FITQLDLSLCPRANDDALSIVSSSSWKLTLRSINLSRSRLFTKVGLSSL---TVNCRFLTEIDLSNGTEMGDAAAAAIAE 148 (468)
Q Consensus 72 ~l~~l~l~~~~~~~~~~~~~l~~~~~~~~L~~L~l~~~~~~~~~~~~~~---~~~~~~L~~L~l~~~~~~~~~~~~~l~~ 148 (468)
+|+.|++++ .++++..+..+ ...+++++.|++.+|. +++..+..+ ...+++|++|+++++ .+++..+..+..
T Consensus 3 ~l~~ld~~~-~~i~~~~~~~l--~~~l~~l~~L~L~~~~-i~~~~~~~l~~~L~~~~~L~~LdLs~N-~i~~~~~~~l~~ 77 (460)
T d1z7xw1 3 DIQSLDIQC-EELSDARWAEL--LPLLQQCQVVRLDDCG-LTEARCKDISSALRVNPALAELNLRSN-ELGDVGVHCVLQ 77 (460)
T ss_dssp EEEEEEEES-CCCCHHHHHHH--HHHHTTCSEEEEESSC-CCHHHHHHHHHHHHTCTTCCEEECTTC-CCHHHHHHHHHH
T ss_pred CCCEEEeeC-CcCChHHHHHH--HHhCCCCCEEEeCCCC-CCHHHHHHHHHHHhcCCCCCEEECcCC-cCChHHHHHHHH
Confidence 456666643 34555555444 3445666666666653 454443333 245666777777665 455555555443
Q ss_pred -----CCCCCeEeccCCcccChHhHHHHHh---cCCCCcEEeccCCCCCChHHHHHHH----------------------
Q 012207 149 -----AKNLERLWLARCKLITDLGIGRIAA---CCRKLKLLCLKWCIRVTDLGVELVA---------------------- 198 (468)
Q Consensus 149 -----~~~L~~L~l~~~~~~~~~~~~~~~~---~~~~L~~L~l~~~~~~~~~~~~~~~---------------------- 198 (468)
..+|++|++++|. +++.++..+.. .+++|++|+++++ .+++.+...+.
T Consensus 78 ~l~~~~~~L~~L~L~~n~-it~~~~~~l~~~l~~~~~L~~L~L~~N-~i~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~ 155 (460)
T d1z7xw1 78 GLQTPSCKIQKLSLQNCC-LTGAGCGVLSSTLRTLPTLQELHLSDN-LLGDAGLQLLCEGLLDPQCRLEKLQLEYCSLSA 155 (460)
T ss_dssp TTCSTTCCCCEEECTTSC-CBGGGHHHHHHHTTSCTTCCEEECCSS-BCHHHHHHHHHHHHTSTTCCCCEEECTTSCCBG
T ss_pred HHhcCCCCCCEEECCCCC-ccccccccccchhhccccccccccccc-cchhhhhhhhhhcccccccccccccccccccch
Confidence 2356677766653 55554444332 3566666666664 34433333222
Q ss_pred ----------hhCCCccEeeecccCCCCCCccccc-----cCCCCCeeeecCCCCCChH--HHHHHHhcCCCCCEEEccC
Q 012207 199 ----------LKCQEIRTLDLSYLPITEKCLPPVV-----KLQYLEDLVLEGCHGIDDD--GLASVEYSCKSLKALNLSK 261 (468)
Q Consensus 199 ----------~~~~~L~~L~l~~~~~~~~~~~~l~-----~~~~L~~L~l~~~~~~~~~--~~~~l~~~~~~L~~L~l~~ 261 (468)
...+.++.+.++++...+.....+. .......+.+..+...... .........+.++.+.+.+
T Consensus 156 ~~~~~~~~~l~~~~~~~~~~ls~~~~~~~~~~~~~~~l~~~~~~~~~l~~~~~~~~~~~~~~~~~~l~~~~~~~~l~~~~ 235 (460)
T d1z7xw1 156 ASCEPLASVLRAKPDFKELTVSNNDINEAGVRVLCQGLKDSPCQLEALKLESCGVTSDNCRDLCGIVASKASLRELALGS 235 (460)
T ss_dssp GGHHHHHHHHHHCTTCCEEECCSSBCHHHHHHHHHHHHHHSCCCCCEEECTTSCCBTTHHHHHHHHHHHCTTCCEEECCS
T ss_pred hhhcccccccccccccccccccccccccccccccccccccccccccccccccccccchhhhcccccccccccccccchhh
Confidence 2333444444443322221111111 1122333444332211111 0111111245555555555
Q ss_pred CcccChh---hHHHHHhcCCccceEeecCCCCCch---hHHHHhhcCCCCCeeEecCCcCChhHHHHHHH----hCCCCC
Q 012207 262 CQNISHV---GLSSLIKGADYLQQLILAYSFWVSA---DLSKCLHNFPMLQSIKFEDCPVARSGIKAIGN----WHGSLK 331 (468)
Q Consensus 262 ~~~~~~~---~~~~~~~~~~~L~~L~l~~~~~~~~---~~~~~l~~~~~L~~L~l~~~~~~~~~~~~l~~----~~~~L~ 331 (468)
+...... .........+.++.++++++..... .....+...+.++.+++.++.+++.+...+.. ....|+
T Consensus 236 n~~~~~~~~~~~~~~~~~~~~l~~l~l~~n~i~~~~~~~~~~~l~~~~~l~~l~l~~n~i~~~~~~~l~~~l~~~~~~L~ 315 (460)
T d1z7xw1 236 NKLGDVGMAELCPGLLHPSSRLRTLWIWECGITAKGCGDLCRVLRAKESLKELSLAGNELGDEGARLLCETLLEPGCQLE 315 (460)
T ss_dssp SBCHHHHHHHHHHHHTSTTCCCCEEECTTSCCCHHHHHHHHHHHHHCTTCCEEECTTCCCHHHHHHHHHHHHTSTTCCCC
T ss_pred ccccccccchhhcccccccccccccccccccccccccccccccccccccccccccccccccccccchhhccccccccccc
Confidence 4321111 1112222344566666655532221 12223445556666666666665555544432 123566
Q ss_pred eEecccCCCCCHHHHH---HHHHhCCCCCeEecCCCCCCCHHHHHHHHh----cCCcCCeEEccCCCCCCHHHHHHHH--
Q 012207 332 ELSLSKCSGVTDEELS---FVVQSHKELRKLDITCCRKITYASINSITK----TCTSLTSLRMECCKLVSWEAFVLIG-- 402 (468)
Q Consensus 332 ~L~l~~~~~~~~~~l~---~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~----~~~~L~~L~l~~~~~~~~~~~~~~~-- 402 (468)
.++++++ .+++.+.. .....+++|++|++++|. +++.++..++. ..+.|++|++++| .+++.++..++
T Consensus 316 ~l~l~~~-~l~~~~~~~l~~~~~~~~~L~~L~Ls~N~-i~~~g~~~l~~~l~~~~~~L~~L~Ls~n-~i~~~~~~~l~~~ 392 (460)
T d1z7xw1 316 SLWVKSC-SFTAACCSHFSSVLAQNRFLLELQISNNR-LEDAGVRELCQGLGQPGSVLRVLWLADC-DVSDSSCSSLAAT 392 (460)
T ss_dssp EEECTTS-CCBGGGHHHHHHHHHHCSSCCEEECCSSB-CHHHHHHHHHHHHTSTTCCCCEEECTTS-CCCHHHHHHHHHH
T ss_pred ccccccc-chhhhhhhhcccccccccchhhhheeeec-ccCcccchhhhhhhcccCCCCEEECCCC-CCChHHHHHHHHH
Confidence 6666654 34333322 233444566666666553 55554444332 2345666666665 35655544432
Q ss_pred -hcCCCCCEEEccCCCCChhhHHhcc-----cCCCCCEEeeCCCCccCHHHHH---HHHhcCcccCee
Q 012207 403 -QQCQYLEELDITENEVNDEGLKSIS-----RCSKLSSLKLGICSNITDEGLK---HVGSTCSMLKEL 461 (468)
Q Consensus 403 -~~~~~L~~L~l~~~~~~~~~~~~l~-----~~~~L~~L~l~~~~~l~~~~~~---~~~~~~~~L~~L 461 (468)
..+++|++|++++|.+++.++..+. ...+|+.|.+.++ .+.++... .+.+..|+|+.|
T Consensus 393 l~~~~~L~~L~Ls~N~i~~~g~~~l~~~l~~~~~~L~~l~l~~~-~~~~~~~~~l~~l~~~~~~l~~~ 459 (460)
T d1z7xw1 393 LLANHSLRELDLSNNCLGDAGILQLVESVRQPGCLLEQLVLYDI-YWSEEMEDRLQALEKDKPSLRVI 459 (460)
T ss_dssp HHHCCCCCEEECCSSSCCHHHHHHHHHHHTSTTCCCCEEECTTC-CCCHHHHHHHHHHHHHCTTSEEE
T ss_pred HhcCCCCCEEECCCCcCCHHHHHHHHHHHHhCCCccCEEECCCC-CCCHHHHHHHHHHHHhCCCCEEe
Confidence 2356666666666666665555443 1234666666666 55543322 333455555544
|
| >d1z7xw1 c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: RNI-like family: 28-residue LRR domain: Ribonuclease inhibitor species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.86 E-value=6.8e-19 Score=164.54 Aligned_cols=360 Identities=20% Similarity=0.248 Sum_probs=250.0
Q ss_pred CCccEEecCCCCcccHHHHHHhhhcCCCCcEEEccCCCccCHHHHHH----HHcCCCCCeEeccCCcccChHhHHHHHhc
Q 012207 99 LTLRSINLSRSRLFTKVGLSSLTVNCRFLTEIDLSNGTEMGDAAAAA----IAEAKNLERLWLARCKLITDLGIGRIAAC 174 (468)
Q Consensus 99 ~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~----l~~~~~L~~L~l~~~~~~~~~~~~~~~~~ 174 (468)
.+|++|++++. .+++..+..+...+++++.|++.+| .+++..... +..+++|++|+++++ .+++.++..+...
T Consensus 2 ~~l~~ld~~~~-~i~~~~~~~l~~~l~~l~~L~L~~~-~i~~~~~~~l~~~L~~~~~L~~LdLs~N-~i~~~~~~~l~~~ 78 (460)
T d1z7xw1 2 LDIQSLDIQCE-ELSDARWAELLPLLQQCQVVRLDDC-GLTEARCKDISSALRVNPALAELNLRSN-ELGDVGVHCVLQG 78 (460)
T ss_dssp EEEEEEEEESC-CCCHHHHHHHHHHHTTCSEEEEESS-CCCHHHHHHHHHHHHTCTTCCEEECTTC-CCHHHHHHHHHHT
T ss_pred CCCCEEEeeCC-cCChHHHHHHHHhCCCCCEEEeCCC-CCCHHHHHHHHHHHhcCCCCCEEECcCC-cCChHHHHHHHHH
Confidence 46899999774 5888888888889999999999999 577766544 456899999999986 4788888877764
Q ss_pred C----CCCcEEeccCCCCCChHHHHHH---HhhCCCccEeeecccCCCCCCccccc------------------------
Q 012207 175 C----RKLKLLCLKWCIRVTDLGVELV---ALKCQEIRTLDLSYLPITEKCLPPVV------------------------ 223 (468)
Q Consensus 175 ~----~~L~~L~l~~~~~~~~~~~~~~---~~~~~~L~~L~l~~~~~~~~~~~~l~------------------------ 223 (468)
+ ++|++|++++| .+++.+...+ ...+++|++|+++++.+.+.....+.
T Consensus 79 l~~~~~~L~~L~L~~n-~it~~~~~~l~~~l~~~~~L~~L~L~~N~i~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~ 157 (460)
T d1z7xw1 79 LQTPSCKIQKLSLQNC-CLTGAGCGVLSSTLRTLPTLQELHLSDNLLGDAGLQLLCEGLLDPQCRLEKLQLEYCSLSAAS 157 (460)
T ss_dssp TCSTTCCCCEEECTTS-CCBGGGHHHHHHHTTSCTTCCEEECCSSBCHHHHHHHHHHHHTSTTCCCCEEECTTSCCBGGG
T ss_pred HhcCCCCCCEEECCCC-Cccccccccccchhhccccccccccccccchhhhhhhhhhcccccccccccccccccccchhh
Confidence 3 57999999998 4776554433 45789999999998866543222211
Q ss_pred ---------cCCCCCeeeecCCCCCChHHHH----HHHhcCCCCCEEEccCCcccChh--hHHHHHhcCCccceEeecCC
Q 012207 224 ---------KLQYLEDLVLEGCHGIDDDGLA----SVEYSCKSLKALNLSKCQNISHV--GLSSLIKGADYLQQLILAYS 288 (468)
Q Consensus 224 ---------~~~~L~~L~l~~~~~~~~~~~~----~l~~~~~~L~~L~l~~~~~~~~~--~~~~~~~~~~~L~~L~l~~~ 288 (468)
..+.++.+.++++ ...+.... .+.........+.+..+...... .........+.++.+.+.++
T Consensus 158 ~~~~~~~l~~~~~~~~~~ls~~-~~~~~~~~~~~~~l~~~~~~~~~l~~~~~~~~~~~~~~~~~~l~~~~~~~~l~~~~n 236 (460)
T d1z7xw1 158 CEPLASVLRAKPDFKELTVSNN-DINEAGVRVLCQGLKDSPCQLEALKLESCGVTSDNCRDLCGIVASKASLRELALGSN 236 (460)
T ss_dssp HHHHHHHHHHCTTCCEEECCSS-BCHHHHHHHHHHHHHHSCCCCCEEECTTSCCBTTHHHHHHHHHHHCTTCCEEECCSS
T ss_pred hccccccccccccccccccccc-ccccccccccccccccccccccccccccccccchhhhcccccccccccccccchhhc
Confidence 2345555555553 22222222 12222345566666665433222 23334556678888888776
Q ss_pred CCCchh----HHHHhhcCCCCCeeEecCCcCChhHHHHHH---HhCCCCCeEecccCCCCCHHHHHHHHHh----CCCCC
Q 012207 289 FWVSAD----LSKCLHNFPMLQSIKFEDCPVARSGIKAIG---NWHGSLKELSLSKCSGVTDEELSFVVQS----HKELR 357 (468)
Q Consensus 289 ~~~~~~----~~~~l~~~~~L~~L~l~~~~~~~~~~~~l~---~~~~~L~~L~l~~~~~~~~~~l~~~~~~----~~~L~ 357 (468)
...... ..........++.+++.+|.+......... ...+.++.+++++ +.+++.++..+... .+.|+
T Consensus 237 ~~~~~~~~~~~~~~~~~~~~l~~l~l~~n~i~~~~~~~~~~~l~~~~~l~~l~l~~-n~i~~~~~~~l~~~l~~~~~~L~ 315 (460)
T d1z7xw1 237 KLGDVGMAELCPGLLHPSSRLRTLWIWECGITAKGCGDLCRVLRAKESLKELSLAG-NELGDEGARLLCETLLEPGCQLE 315 (460)
T ss_dssp BCHHHHHHHHHHHHTSTTCCCCEEECTTSCCCHHHHHHHHHHHHHCTTCCEEECTT-CCCHHHHHHHHHHHHTSTTCCCC
T ss_pred cccccccchhhccccccccccccccccccccccccccccccccccccccccccccc-ccccccccchhhccccccccccc
Confidence 432221 222234567899999999988766544333 2578899999988 46777776665433 35799
Q ss_pred eEecCCCCCCCHHHHH---HHHhcCCcCCeEEccCCCCCCHHHHHHHHh----cCCCCCEEEccCCCCChhhHHhc----
Q 012207 358 KLDITCCRKITYASIN---SITKTCTSLTSLRMECCKLVSWEAFVLIGQ----QCQYLEELDITENEVNDEGLKSI---- 426 (468)
Q Consensus 358 ~L~l~~~~~~~~~~~~---~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~----~~~~L~~L~l~~~~~~~~~~~~l---- 426 (468)
.+.+++|. +++.++. .....+++|++|+++++ .+++.++..+.+ ..+.|++|++++|.+++.+...+
T Consensus 316 ~l~l~~~~-l~~~~~~~l~~~~~~~~~L~~L~Ls~N-~i~~~g~~~l~~~l~~~~~~L~~L~Ls~n~i~~~~~~~l~~~l 393 (460)
T d1z7xw1 316 SLWVKSCS-FTAACCSHFSSVLAQNRFLLELQISNN-RLEDAGVRELCQGLGQPGSVLRVLWLADCDVSDSSCSSLAATL 393 (460)
T ss_dssp EEECTTSC-CBGGGHHHHHHHHHHCSSCCEEECCSS-BCHHHHHHHHHHHHTSTTCCCCEEECTTSCCCHHHHHHHHHHH
T ss_pred cccccccc-hhhhhhhhcccccccccchhhhheeee-cccCcccchhhhhhhcccCCCCEEECCCCCCChHHHHHHHHHH
Confidence 99999886 5554433 33456789999999985 588877766653 45679999999999998876664
Q ss_pred ccCCCCCEEeeCCCCccCHHHHHHHHhc----CcccCeeecCCCC
Q 012207 427 SRCSKLSSLKLGICSNITDEGLKHVGST----CSMLKELDLYRFS 467 (468)
Q Consensus 427 ~~~~~L~~L~l~~~~~l~~~~~~~~~~~----~~~L~~L~l~~c~ 467 (468)
..+++|++|++++| .+++.++..+.+. ..+|+.|++.+|.
T Consensus 394 ~~~~~L~~L~Ls~N-~i~~~g~~~l~~~l~~~~~~L~~l~l~~~~ 437 (460)
T d1z7xw1 394 LANHSLRELDLSNN-CLGDAGILQLVESVRQPGCLLEQLVLYDIY 437 (460)
T ss_dssp HHCCCCCEEECCSS-SCCHHHHHHHHHHHTSTTCCCCEEECTTCC
T ss_pred hcCCCCCEEECCCC-cCCHHHHHHHHHHHHhCCCccCEEECCCCC
Confidence 35799999999999 9999888877643 3479999998875
|
| >d2ca6a1 c.10.1.2 (A:2-345) Rna1p (RanGAP1), N-terminal domain {Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: RNI-like family: Rna1p (RanGAP1), N-terminal domain domain: Rna1p (RanGAP1), N-terminal domain species: Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]
Probab=99.73 E-value=8.7e-16 Score=136.94 Aligned_cols=241 Identities=17% Similarity=0.216 Sum_probs=141.7
Q ss_pred HhhCCCccEeeecccCCCCCCccccc----cCCCCCeeeecCCCC--CC---hHHHHHHH---hcCCCCCEEEccCCccc
Q 012207 198 ALKCQEIRTLDLSYLPITEKCLPPVV----KLQYLEDLVLEGCHG--ID---DDGLASVE---YSCKSLKALNLSKCQNI 265 (468)
Q Consensus 198 ~~~~~~L~~L~l~~~~~~~~~~~~l~----~~~~L~~L~l~~~~~--~~---~~~~~~l~---~~~~~L~~L~l~~~~~~ 265 (468)
......++.|+++++.+.++....++ ..++|+.+.++++.. .. ......+. ..+++|++|+++++. +
T Consensus 27 L~~~~~l~~L~Ls~n~i~~~~~~~l~~~l~~~~~L~~l~l~~~~~~~~~~~~~~~~~~l~~~l~~~~~L~~L~L~~n~-i 105 (344)
T d2ca6a1 27 LLEDDSVKEIVLSGNTIGTEAARWLSENIASKKDLEIAEFSDIFTGRVKDEIPEALRLLLQALLKCPKLHTVRLSDNA-F 105 (344)
T ss_dssp HHHCSCCCEEECTTSEECHHHHHHHHHTTTTCTTCCEEECCSCCTTSCGGGSHHHHHHHHHHHTTCTTCCEEECCSCC-C
T ss_pred HhhCCCCCEEECcCCcCCHHHHHHHHHHHHhCCCCCEEECCCCcccccccccchHHHHHHHHHhhCCCcccccccccc-c
Confidence 34678888888888877666555543 467888888876421 11 11222222 236778888887765 3
Q ss_pred Chhh---HHHHHhcCCccceEeecCCCCCchhHHHH-------------hhcCCCCCeeEecCCcCChhHHHHHH---Hh
Q 012207 266 SHVG---LSSLIKGADYLQQLILAYSFWVSADLSKC-------------LHNFPMLQSIKFEDCPVARSGIKAIG---NW 326 (468)
Q Consensus 266 ~~~~---~~~~~~~~~~L~~L~l~~~~~~~~~~~~~-------------l~~~~~L~~L~l~~~~~~~~~~~~l~---~~ 326 (468)
++.+ +...+...++|++|+++++. +....... ....+.|+.+.+.++.+.+.+...+. ..
T Consensus 106 ~~~~~~~l~~~l~~~~~L~~L~l~~n~-l~~~~~~~l~~~l~~~~~~~~~~~~~~L~~l~l~~n~i~~~~~~~l~~~l~~ 184 (344)
T d2ca6a1 106 GPTAQEPLIDFLSKHTPLEHLYLHNNG-LGPQAGAKIARALQELAVNKKAKNAPPLRSIICGRNRLENGSMKEWAKTFQS 184 (344)
T ss_dssp CTTTHHHHHHHHHHCTTCCEEECCSSC-CHHHHHHHHHHHHHHHHHHHHHHTCCCCCEEECCSSCCTGGGHHHHHHHHHH
T ss_pred ccccccchhhhhcccccchheeccccc-ccccccccccccccccccccccccCcccceeecccccccccccccccchhhh
Confidence 3332 33344566777888777763 33221111 12456777777777776665554443 24
Q ss_pred CCCCCeEecccCCCCCHHHHHHH----HHhCCCCCeEecCCCCCCCHHHHHHHH---hcCCcCCeEEccCCCCCCHHHHH
Q 012207 327 HGSLKELSLSKCSGVTDEELSFV----VQSHKELRKLDITCCRKITYASINSIT---KTCTSLTSLRMECCKLVSWEAFV 399 (468)
Q Consensus 327 ~~~L~~L~l~~~~~~~~~~l~~~----~~~~~~L~~L~l~~~~~~~~~~~~~~~---~~~~~L~~L~l~~~~~~~~~~~~ 399 (468)
+++|++|+++++ .+++.++..+ +..+++|+.|++++|. +++.+...+. ..+++|++|++++|. +++.+..
T Consensus 185 ~~~L~~L~L~~n-~i~~~g~~~~l~~~l~~~~~L~~L~Ls~N~-i~~~g~~~L~~~l~~~~~L~~L~Ls~n~-i~~~g~~ 261 (344)
T d2ca6a1 185 HRLLHTVKMVQN-GIRPEGIEHLLLEGLAYCQELKVLDLQDNT-FTHLGSSALAIALKSWPNLRELGLNDCL-LSARGAA 261 (344)
T ss_dssp CTTCCEEECCSS-CCCHHHHHHHHHTTGGGCTTCCEEECCSSC-CHHHHHHHHHHHGGGCTTCCEEECTTCC-CCHHHHH
T ss_pred hhhhcccccccc-cccccccccchhhhhcchhhhccccccccc-ccccccccccccccccccchhhhhhcCc-cCchhhH
Confidence 567777777764 5666554332 2345677777777664 5555443332 356777777777754 6666655
Q ss_pred HHHh-----cCCCCCEEEccCCCCChhhHHhcc-----cCCCCCEEeeCCCCccC
Q 012207 400 LIGQ-----QCQYLEELDITENEVNDEGLKSIS-----RCSKLSSLKLGICSNIT 444 (468)
Q Consensus 400 ~~~~-----~~~~L~~L~l~~~~~~~~~~~~l~-----~~~~L~~L~l~~~~~l~ 444 (468)
.++. ..+.|++|++++|.+++.+...+. ++++|+.|++++| .+.
T Consensus 262 ~l~~~l~~~~~~~L~~L~ls~N~i~~~~~~~l~~~l~~~~~~L~~L~l~~N-~~~ 315 (344)
T d2ca6a1 262 AVVDAFSKLENIGLQTLRLQYNEIELDAVRTLKTVIDEKMPDLLFLELNGN-RFS 315 (344)
T ss_dssp HHHHHHHTCSSCCCCEEECCSSCCBHHHHHHHHHHHHHHCTTCCEEECTTS-BSC
T ss_pred HHHHHhhhccCCCCCEEECCCCcCChHHHHHHHHHHHccCCCCCEEECCCC-cCC
Confidence 5543 134577777777777766655543 3567777777776 553
|
| >d2ca6a1 c.10.1.2 (A:2-345) Rna1p (RanGAP1), N-terminal domain {Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: RNI-like family: Rna1p (RanGAP1), N-terminal domain domain: Rna1p (RanGAP1), N-terminal domain species: Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]
Probab=99.70 E-value=1.2e-15 Score=136.00 Aligned_cols=240 Identities=15% Similarity=0.185 Sum_probs=116.2
Q ss_pred CCCCcEEeccCCCCCChHHHHHHHh---hCCCccEeeecccCCCCC---C-------ccccccCCCCCeeeecCCCCCCh
Q 012207 175 CRKLKLLCLKWCIRVTDLGVELVAL---KCQEIRTLDLSYLPITEK---C-------LPPVVKLQYLEDLVLEGCHGIDD 241 (468)
Q Consensus 175 ~~~L~~L~l~~~~~~~~~~~~~~~~---~~~~L~~L~l~~~~~~~~---~-------~~~l~~~~~L~~L~l~~~~~~~~ 241 (468)
...|+.|+++++ .+.+.+...+.. ..++|+.++++++..... . ...+..+++|++|+++++ .+++
T Consensus 30 ~~~l~~L~Ls~n-~i~~~~~~~l~~~l~~~~~L~~l~l~~~~~~~~~~~~~~~~~~l~~~l~~~~~L~~L~L~~n-~i~~ 107 (344)
T d2ca6a1 30 DDSVKEIVLSGN-TIGTEAARWLSENIASKKDLEIAEFSDIFTGRVKDEIPEALRLLLQALLKCPKLHTVRLSDN-AFGP 107 (344)
T ss_dssp CSCCCEEECTTS-EECHHHHHHHHHTTTTCTTCCEEECCSCCTTSCGGGSHHHHHHHHHHHTTCTTCCEEECCSC-CCCT
T ss_pred CCCCCEEECcCC-cCCHHHHHHHHHHHHhCCCCCEEECCCCcccccccccchHHHHHHHHHhhCCCccccccccc-cccc
Confidence 556666666654 455555444432 345666666655422111 0 111224556666666653 3333
Q ss_pred HHHHHH---HhcCCCCCEEEccCCcccChhhHHH------------HHhcCCccceEeecCCCCCc---hhHHHHhhcCC
Q 012207 242 DGLASV---EYSCKSLKALNLSKCQNISHVGLSS------------LIKGADYLQQLILAYSFWVS---ADLSKCLHNFP 303 (468)
Q Consensus 242 ~~~~~l---~~~~~~L~~L~l~~~~~~~~~~~~~------------~~~~~~~L~~L~l~~~~~~~---~~~~~~l~~~~ 303 (468)
.....+ ...+++|++|+++++. +.+.+... .....+.|+.+.++++.... ..+...+..++
T Consensus 108 ~~~~~l~~~l~~~~~L~~L~l~~n~-l~~~~~~~l~~~l~~~~~~~~~~~~~~L~~l~l~~n~i~~~~~~~l~~~l~~~~ 186 (344)
T d2ca6a1 108 TAQEPLIDFLSKHTPLEHLYLHNNG-LGPQAGAKIARALQELAVNKKAKNAPPLRSIICGRNRLENGSMKEWAKTFQSHR 186 (344)
T ss_dssp TTHHHHHHHHHHCTTCCEEECCSSC-CHHHHHHHHHHHHHHHHHHHHHHTCCCCCEEECCSSCCTGGGHHHHHHHHHHCT
T ss_pred ccccchhhhhcccccchheeccccc-ccccccccccccccccccccccccCcccceeecccccccccccccccchhhhhh
Confidence 222221 1225666666666554 22221111 11234556666665542211 12333344556
Q ss_pred CCCeeEecCCcCChhHHHHHH----HhCCCCCeEecccCCCCCHHHHHHH---HHhCCCCCeEecCCCCCCCHHHHHHHH
Q 012207 304 MLQSIKFEDCPVARSGIKAIG----NWHGSLKELSLSKCSGVTDEELSFV---VQSHKELRKLDITCCRKITYASINSIT 376 (468)
Q Consensus 304 ~L~~L~l~~~~~~~~~~~~l~----~~~~~L~~L~l~~~~~~~~~~l~~~---~~~~~~L~~L~l~~~~~~~~~~~~~~~ 376 (468)
.|+.|++.+|.+.+.+...+. ..+++|+.|+++++ .+++.+...+ +..+++|++|++++|. +++.++..++
T Consensus 187 ~L~~L~L~~n~i~~~g~~~~l~~~l~~~~~L~~L~Ls~N-~i~~~g~~~L~~~l~~~~~L~~L~Ls~n~-i~~~g~~~l~ 264 (344)
T d2ca6a1 187 LLHTVKMVQNGIRPEGIEHLLLEGLAYCQELKVLDLQDN-TFTHLGSSALAIALKSWPNLRELGLNDCL-LSARGAAAVV 264 (344)
T ss_dssp TCCEEECCSSCCCHHHHHHHHHTTGGGCTTCCEEECCSS-CCHHHHHHHHHHHGGGCTTCCEEECTTCC-CCHHHHHHHH
T ss_pred hhcccccccccccccccccchhhhhcchhhhcccccccc-cccccccccccccccccccchhhhhhcCc-cCchhhHHHH
Confidence 666666666666655433321 23456666666653 4554443332 3345666666666654 5555544443
Q ss_pred h-----cCCcCCeEEccCCCCCCHHHHHHHHh----cCCCCCEEEccCCCCCh
Q 012207 377 K-----TCTSLTSLRMECCKLVSWEAFVLIGQ----QCQYLEELDITENEVND 420 (468)
Q Consensus 377 ~-----~~~~L~~L~l~~~~~~~~~~~~~~~~----~~~~L~~L~l~~~~~~~ 420 (468)
. ..+.|++|+++++ .+++.++..+.. .+++|+.|++++|.+.+
T Consensus 265 ~~l~~~~~~~L~~L~ls~N-~i~~~~~~~l~~~l~~~~~~L~~L~l~~N~~~~ 316 (344)
T d2ca6a1 265 DAFSKLENIGLQTLRLQYN-EIELDAVRTLKTVIDEKMPDLLFLELNGNRFSE 316 (344)
T ss_dssp HHHHTCSSCCCCEEECCSS-CCBHHHHHHHHHHHHHHCTTCCEEECTTSBSCT
T ss_pred HHhhhccCCCCCEEECCCC-cCChHHHHHHHHHHHccCCCCCEEECCCCcCCC
Confidence 2 1245666666663 355555444332 35566666666665544
|
| >d2omza2 c.10.2.1 (A:33-416) Internalin A {Listeria monocytogenes [TaxId: 1639]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: L domain-like family: Internalin LRR domain domain: Internalin A species: Listeria monocytogenes [TaxId: 1639]
Probab=99.70 E-value=2.3e-16 Score=143.45 Aligned_cols=188 Identities=17% Similarity=0.167 Sum_probs=132.4
Q ss_pred CCCCCEEEccCCcccChhhHHHHHhcCCccceEeecCCCCCchhHHHHhhcCCCCCeeEecCCcCChhHHHHHHHhCCCC
Q 012207 251 CKSLKALNLSKCQNISHVGLSSLIKGADYLQQLILAYSFWVSADLSKCLHNFPMLQSIKFEDCPVARSGIKAIGNWHGSL 330 (468)
Q Consensus 251 ~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~l~~~~~~L 330 (468)
+++++.+.++++....... ....++|++|+++++.. .. ...+..+++|+.|++.++.+.+... +. .+++|
T Consensus 196 l~~~~~l~l~~n~i~~~~~----~~~~~~L~~L~l~~n~l-~~--~~~l~~l~~L~~L~l~~n~l~~~~~--~~-~~~~L 265 (384)
T d2omza2 196 LTNLESLIATNNQISDITP----LGILTNLDELSLNGNQL-KD--IGTLASLTNLTDLDLANNQISNLAP--LS-GLTKL 265 (384)
T ss_dssp CTTCSEEECCSSCCCCCGG----GGGCTTCCEEECCSSCC-CC--CGGGGGCTTCSEEECCSSCCCCCGG--GT-TCTTC
T ss_pred ccccceeeccCCccCCCCc----ccccCCCCEEECCCCCC-CC--cchhhcccccchhccccCccCCCCc--cc-ccccC
Confidence 7888888888765322111 34567888888887732 22 2356788899999999988765432 22 67899
Q ss_pred CeEecccCCCCCHHHHHHHHHhCCCCCeEecCCCCCCCHHHHHHHHhcCCcCCeEEccCCCCCCHHHHHHHHhcCCCCCE
Q 012207 331 KELSLSKCSGVTDEELSFVVQSHKELRKLDITCCRKITYASINSITKTCTSLTSLRMECCKLVSWEAFVLIGQQCQYLEE 410 (468)
Q Consensus 331 ~~L~l~~~~~~~~~~l~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~ 410 (468)
++|+++++ .+.. +.. +..++.++.+.+..|. ++.. .. ...+++++.|+++++. +++. ..+ ..+++|++
T Consensus 266 ~~L~l~~~-~l~~--~~~-~~~~~~l~~l~~~~n~-l~~~--~~-~~~~~~l~~L~ls~n~-l~~l--~~l-~~l~~L~~ 333 (384)
T d2omza2 266 TELKLGAN-QISN--ISP-LAGLTALTNLELNENQ-LEDI--SP-ISNLKNLTYLTLYFNN-ISDI--SPV-SSLTKLQR 333 (384)
T ss_dssp SEEECCSS-CCCC--CGG-GTTCTTCSEEECCSSC-CSCC--GG-GGGCTTCSEEECCSSC-CSCC--GGG-GGCTTCCE
T ss_pred CEeeccCc-ccCC--CCc-cccccccccccccccc-cccc--cc-cchhcccCeEECCCCC-CCCC--ccc-ccCCCCCE
Confidence 99999874 3432 122 4467889999988776 3321 11 3468999999999854 5542 223 38899999
Q ss_pred EEccCCCCChhhHHhcccCCCCCEEeeCCCCccCHHHHHHHHhcCcccCeeecCCC
Q 012207 411 LDITENEVNDEGLKSISRCSKLSSLKLGICSNITDEGLKHVGSTCSMLKELDLYRF 466 (468)
Q Consensus 411 L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~~L~~L~l~~c 466 (468)
|++++|.+++. ..++.+++|++|++++| ++++ +.. ..++++|+.|+|++|
T Consensus 334 L~L~~n~l~~l--~~l~~l~~L~~L~l~~N-~l~~--l~~-l~~l~~L~~L~L~~N 383 (384)
T d2omza2 334 LFFANNKVSDV--SSLANLTNINWLSAGHN-QISD--LTP-LANLTRITQLGLNDQ 383 (384)
T ss_dssp EECCSSCCCCC--GGGGGCTTCCEEECCSS-CCCB--CGG-GTTCTTCSEEECCCE
T ss_pred EECCCCCCCCC--hhHcCCCCCCEEECCCC-cCCC--Chh-hccCCCCCEeeCCCC
Confidence 99999998874 35788999999999999 8875 333 357999999999886
|
| >d2omza2 c.10.2.1 (A:33-416) Internalin A {Listeria monocytogenes [TaxId: 1639]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: L domain-like family: Internalin LRR domain domain: Internalin A species: Listeria monocytogenes [TaxId: 1639]
Probab=99.60 E-value=7.7e-15 Score=133.18 Aligned_cols=302 Identities=17% Similarity=0.180 Sum_probs=190.5
Q ss_pred CCCCcEEEccCCCccCHHHHHHHHcCCCCCeEeccCCcccChHhHHHHHhcCCCCcEEeccCCCCCChHHHHHHHhhCCC
Q 012207 124 CRFLTEIDLSNGTEMGDAAAAAIAEAKNLERLWLARCKLITDLGIGRIAACCRKLKLLCLKWCIRVTDLGVELVALKCQE 203 (468)
Q Consensus 124 ~~~L~~L~l~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~ 203 (468)
+.+|++|+++++ .+.+. ..+..+++|++|+++++. +++.. . ...+++|++|+++++. +.+.. . ...+++
T Consensus 43 l~~l~~L~l~~~-~I~~l--~gl~~L~nL~~L~Ls~N~-l~~l~--~-l~~L~~L~~L~L~~n~-i~~i~--~-l~~l~~ 111 (384)
T d2omza2 43 LDQVTTLQADRL-GIKSI--DGVEYLNNLTQINFSNNQ-LTDIT--P-LKNLTKLVDILMNNNQ-IADIT--P-LANLTN 111 (384)
T ss_dssp HTTCCEEECCSS-CCCCC--TTGGGCTTCCEEECCSSC-CCCCG--G-GTTCTTCCEEECCSSC-CCCCG--G-GTTCTT
T ss_pred hCCCCEEECCCC-CCCCc--cccccCCCCCEEeCcCCc-CCCCc--c-ccCCcccccccccccc-ccccc--c-cccccc
Confidence 457899999887 35442 356778899999998864 44432 1 3348888999888874 33321 1 347788
Q ss_pred ccEeeecccCCCCCCccccccCCCCCeeeecCCCC--CCh----------------HHHHHHHhcCCCCCEEEccCCccc
Q 012207 204 IRTLDLSYLPITEKCLPPVVKLQYLEDLVLEGCHG--IDD----------------DGLASVEYSCKSLKALNLSKCQNI 265 (468)
Q Consensus 204 L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~--~~~----------------~~~~~l~~~~~~L~~L~l~~~~~~ 265 (468)
|+.|++.++.+.+.. .......+.......+.. +.. .....+.. ...........+...
T Consensus 112 L~~L~~~~~~~~~~~--~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~ 188 (384)
T d2omza2 112 LTGLTLFNNQITDID--PLKNLTNLNRLELSSNTISDISALSGLTSLQQLSFGNQVTDLKPLAN-LTTLERLDISSNKVS 188 (384)
T ss_dssp CCEEECCSSCCCCCG--GGTTCTTCSEEEEEEEEECCCGGGTTCTTCSEEEEEESCCCCGGGTT-CTTCCEEECCSSCCC
T ss_pred ccccccccccccccc--cccccccccccccccccccccccccccccccccccccccchhhhhcc-ccccccccccccccc
Confidence 888888877654322 222233333333322100 000 00000111 222233333322211
Q ss_pred ChhhHHHHHhcCCccceEeecCCCCCchhHHHHhhcCCCCCeeEecCCcCChhHHHHHHHhCCCCCeEecccCCCCCHHH
Q 012207 266 SHVGLSSLIKGADYLQQLILAYSFWVSADLSKCLHNFPMLQSIKFEDCPVARSGIKAIGNWHGSLKELSLSKCSGVTDEE 345 (468)
Q Consensus 266 ~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~l~~~~~~L~~L~l~~~~~~~~~~ 345 (468)
. ......+++++.+.++++. +.... ....+++|++|++.++.+.+.. .+ ..+++|+.|+++++ .+++
T Consensus 189 ~----~~~~~~l~~~~~l~l~~n~-i~~~~--~~~~~~~L~~L~l~~n~l~~~~--~l-~~l~~L~~L~l~~n-~l~~-- 255 (384)
T d2omza2 189 D----ISVLAKLTNLESLIATNNQ-ISDIT--PLGILTNLDELSLNGNQLKDIG--TL-ASLTNLTDLDLANN-QISN-- 255 (384)
T ss_dssp C----CGGGGGCTTCSEEECCSSC-CCCCG--GGGGCTTCCEEECCSSCCCCCG--GG-GGCTTCSEEECCSS-CCCC--
T ss_pred c----ccccccccccceeeccCCc-cCCCC--cccccCCCCEEECCCCCCCCcc--hh-hcccccchhccccC-ccCC--
Confidence 1 1224567888999988763 33222 2456789999999999877643 22 26789999999985 4443
Q ss_pred HHHHHHhCCCCCeEecCCCCCCCHHHHHHHHhcCCcCCeEEccCCCCCCHHHHHHHHhcCCCCCEEEccCCCCChhhHHh
Q 012207 346 LSFVVQSHKELRKLDITCCRKITYASINSITKTCTSLTSLRMECCKLVSWEAFVLIGQQCQYLEELDITENEVNDEGLKS 425 (468)
Q Consensus 346 l~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~ 425 (468)
+.. +..+++|++|+++++. +... .. ...++.++.+.+..+. ++. +..+ ..+++++.|++++|.+++.. .
T Consensus 256 ~~~-~~~~~~L~~L~l~~~~-l~~~--~~-~~~~~~l~~l~~~~n~-l~~--~~~~-~~~~~l~~L~ls~n~l~~l~--~ 324 (384)
T d2omza2 256 LAP-LSGLTKLTELKLGANQ-ISNI--SP-LAGLTALTNLELNENQ-LED--ISPI-SNLKNLTYLTLYFNNISDIS--P 324 (384)
T ss_dssp CGG-GTTCTTCSEEECCSSC-CCCC--GG-GTTCTTCSEEECCSSC-CSC--CGGG-GGCTTCSEEECCSSCCSCCG--G
T ss_pred CCc-ccccccCCEeeccCcc-cCCC--Cc-cccccccccccccccc-ccc--cccc-chhcccCeEECCCCCCCCCc--c
Confidence 222 4578999999998876 3321 11 2468899999998854 332 2223 37899999999999998753 4
Q ss_pred cccCCCCCEEeeCCCCccCHHHHHHHHhcCcccCeeecCCCC
Q 012207 426 ISRCSKLSSLKLGICSNITDEGLKHVGSTCSMLKELDLYRFS 467 (468)
Q Consensus 426 l~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~~L~~L~l~~c~ 467 (468)
+..+++|+.|++++| .+++ +.. ...+|+|+.|++++|+
T Consensus 325 l~~l~~L~~L~L~~n-~l~~--l~~-l~~l~~L~~L~l~~N~ 362 (384)
T d2omza2 325 VSSLTKLQRLFFANN-KVSD--VSS-LANLTNINWLSAGHNQ 362 (384)
T ss_dssp GGGCTTCCEEECCSS-CCCC--CGG-GGGCTTCCEEECCSSC
T ss_pred cccCCCCCEEECCCC-CCCC--Chh-HcCCCCCCEEECCCCc
Confidence 778999999999999 8885 343 4579999999999986
|
| >d1ogqa_ c.10.2.8 (A:) Polygalacturonase inhibiting protein PGIP {Kidney bean (Phaseolus vulgaris) [TaxId: 3885]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: L domain-like family: Polygalacturonase inhibiting protein PGIP domain: Polygalacturonase inhibiting protein PGIP species: Kidney bean (Phaseolus vulgaris) [TaxId: 3885]
Probab=99.44 E-value=1.2e-16 Score=140.55 Aligned_cols=249 Identities=14% Similarity=0.202 Sum_probs=120.2
Q ss_pred CccEeeecccCCCCC--CccccccCCCCCeeeecCCCCCChHHHHHHHhcCCCCCEEEccCCcccChhhHHHHHhcCCcc
Q 012207 203 EIRTLDLSYLPITEK--CLPPVVKLQYLEDLVLEGCHGIDDDGLASVEYSCKSLKALNLSKCQNISHVGLSSLIKGADYL 280 (468)
Q Consensus 203 ~L~~L~l~~~~~~~~--~~~~l~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L 280 (468)
+++.|+++++.+... ....+.++++|++|++++++.+.......+.. +++|++|+++++...... ...+...+.|
T Consensus 51 ~v~~L~L~~~~l~g~~~lp~~l~~L~~L~~L~Ls~~N~l~g~iP~~i~~-L~~L~~L~Ls~N~l~~~~--~~~~~~~~~L 127 (313)
T d1ogqa_ 51 RVNNLDLSGLNLPKPYPIPSSLANLPYLNFLYIGGINNLVGPIPPAIAK-LTQLHYLYITHTNVSGAI--PDFLSQIKTL 127 (313)
T ss_dssp CEEEEEEECCCCSSCEECCGGGGGCTTCSEEEEEEETTEESCCCGGGGG-CTTCSEEEEEEECCEEEC--CGGGGGCTTC
T ss_pred EEEEEECCCCCCCCCCCCChHHhcCcccccccccccccccccccccccc-ccccchhhhccccccccc--cccccchhhh
Confidence 344455544433321 22344445555555554433322111122333 455555555544321100 1112334455
Q ss_pred ceEeecCCCCCchhHHHHhhcCCCCCeeEecCCcCChhHHHHHHHhCCC-CCeEecccCCCCCHHHHHHHHHhCCCCCeE
Q 012207 281 QQLILAYSFWVSADLSKCLHNFPMLQSIKFEDCPVARSGIKAIGNWHGS-LKELSLSKCSGVTDEELSFVVQSHKELRKL 359 (468)
Q Consensus 281 ~~L~l~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~l~~~~~~-L~~L~l~~~~~~~~~~l~~~~~~~~~L~~L 359 (468)
+.++++.+ ......+..+..++.++.++++++.+....+..+. .+.. ++.+.++++ .++.. .+..+... ....+
T Consensus 128 ~~l~l~~N-~~~~~~p~~l~~l~~L~~l~l~~n~l~~~ip~~~~-~l~~l~~~l~~~~n-~l~~~-~~~~~~~l-~~~~l 202 (313)
T d1ogqa_ 128 VTLDFSYN-ALSGTLPPSISSLPNLVGITFDGNRISGAIPDSYG-SFSKLFTSMTISRN-RLTGK-IPPTFANL-NLAFV 202 (313)
T ss_dssp CEEECCSS-EEESCCCGGGGGCTTCCEEECCSSCCEEECCGGGG-CCCTTCCEEECCSS-EEEEE-CCGGGGGC-CCSEE
T ss_pred cccccccc-cccccCchhhccCcccceeeccccccccccccccc-cccccccccccccc-ccccc-cccccccc-ccccc
Confidence 55555544 22223334455666666666666655433333332 2233 355555542 22211 01112222 33455
Q ss_pred ecCCCCCCCHHHHHHHHhcCCcCCeEEccCCCCCCHHHHHHHHhcCCCCCEEEccCCCCChhhHHhcccCCCCCEEeeCC
Q 012207 360 DITCCRKITYASINSITKTCTSLTSLRMECCKLVSWEAFVLIGQQCQYLEELDITENEVNDEGLKSISRCSKLSSLKLGI 439 (468)
Q Consensus 360 ~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~ 439 (468)
++..+..... +......+++++.+++.++. ++.. +..+. .+++|+.|++++|.+++..+..++++++|+.|++++
T Consensus 203 ~l~~~~~~~~--~~~~~~~~~~l~~l~~~~~~-l~~~-~~~~~-~~~~L~~L~Ls~N~l~g~iP~~l~~L~~L~~L~Ls~ 277 (313)
T d1ogqa_ 203 DLSRNMLEGD--ASVLFGSDKNTQKIHLAKNS-LAFD-LGKVG-LSKNLNGLDLRNNRIYGTLPQGLTQLKFLHSLNVSF 277 (313)
T ss_dssp ECCSSEEEEC--CGGGCCTTSCCSEEECCSSE-ECCB-GGGCC-CCTTCCEEECCSSCCEECCCGGGGGCTTCCEEECCS
T ss_pred cccccccccc--cccccccccccccccccccc-cccc-ccccc-cccccccccCccCeecccCChHHhCCCCCCEEECcC
Confidence 5554332111 11222346777777777654 2211 12222 567888888888888766666777888888888888
Q ss_pred CCccCHHHHHHHHhcCcccCeeecCCCC
Q 012207 440 CSNITDEGLKHVGSTCSMLKELDLYRFS 467 (468)
Q Consensus 440 ~~~l~~~~~~~~~~~~~~L~~L~l~~c~ 467 (468)
| +++. .++.+ ..+.+|+.+++.+|+
T Consensus 278 N-~l~g-~iP~~-~~L~~L~~l~l~~N~ 302 (313)
T d1ogqa_ 278 N-NLCG-EIPQG-GNLQRFDVSAYANNK 302 (313)
T ss_dssp S-EEEE-ECCCS-TTGGGSCGGGTCSSS
T ss_pred C-cccc-cCCCc-ccCCCCCHHHhCCCc
Confidence 8 7763 12222 356788888887775
|
| >d1xkua_ c.10.2.7 (A:) Decorin {Cow (Bos taurus) [TaxId: 9913]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: L domain-like family: Ngr ectodomain-like domain: Decorin species: Cow (Bos taurus) [TaxId: 9913]
Probab=99.41 E-value=8.9e-14 Score=121.54 Aligned_cols=247 Identities=17% Similarity=0.145 Sum_probs=146.5
Q ss_pred CCccEeeecccCCCCCCccccccCCCCCeeeecCCCCCChHHHHHHHhcCCCCCEEEccCCcccChhhHHHHHhcCCccc
Q 012207 202 QEIRTLDLSYLPITEKCLPPVVKLQYLEDLVLEGCHGIDDDGLASVEYSCKSLKALNLSKCQNISHVGLSSLIKGADYLQ 281 (468)
Q Consensus 202 ~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~ 281 (468)
+++++|+++++.++.-....+.++++|++|+++++. +.......+.. +++|+.|++.++. +.... ....+.++
T Consensus 31 ~~l~~L~Ls~N~i~~l~~~~f~~l~~L~~L~l~~n~-~~~i~~~~f~~-l~~L~~L~l~~n~-l~~l~----~~~~~~l~ 103 (305)
T d1xkua_ 31 PDTALLDLQNNKITEIKDGDFKNLKNLHTLILINNK-ISKISPGAFAP-LVKLERLYLSKNQ-LKELP----EKMPKTLQ 103 (305)
T ss_dssp TTCCEEECCSSCCCCBCTTTTTTCTTCCEEECCSSC-CCCBCTTTTTT-CTTCCEEECCSSC-CSBCC----SSCCTTCC
T ss_pred CCCCEEECcCCcCCCcChhHhhcccccccccccccc-ccccchhhhhC-CCccCEecccCCc-cCcCc----cchhhhhh
Confidence 345566666555543322344555666666665532 22221122222 5666666666553 11110 11234566
Q ss_pred eEeecCCCCCchhHHHHhhcCCCCCeeEecCCcCChhH-HHHHHHhCCCCCeEecccCCCCCHHHHHHHHHhCCCCCeEe
Q 012207 282 QLILAYSFWVSADLSKCLHNFPMLQSIKFEDCPVARSG-IKAIGNWHGSLKELSLSKCSGVTDEELSFVVQSHKELRKLD 360 (468)
Q Consensus 282 ~L~l~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~-~~~l~~~~~~L~~L~l~~~~~~~~~~l~~~~~~~~~L~~L~ 360 (468)
.|.+..+ .+.......+.....+..+....+...... .......+++|+.++++++. +.. ++ ...+++|++|+
T Consensus 104 ~L~~~~n-~l~~l~~~~~~~~~~~~~l~~~~n~~~~~~~~~~~~~~l~~L~~l~l~~n~-l~~--l~--~~~~~~L~~L~ 177 (305)
T d1xkua_ 104 ELRVHEN-EITKVRKSVFNGLNQMIVVELGTNPLKSSGIENGAFQGMKKLSYIRIADTN-ITT--IP--QGLPPSLTELH 177 (305)
T ss_dssp EEECCSS-CCCBBCHHHHTTCTTCCEEECCSSCCCGGGBCTTGGGGCTTCCEEECCSSC-CCS--CC--SSCCTTCSEEE
T ss_pred hhhcccc-chhhhhhhhhhccccccccccccccccccCCCccccccccccCccccccCC-ccc--cC--cccCCccCEEE
Confidence 6666554 233333344556667777777766533221 11122367899999999853 332 11 12358999999
Q ss_pred cCCCCCCCHHHHHHHHhcCCcCCeEEccCCCCCCHHHHHHHHhcCCCCCEEEccCCCCChhhHHhcccCCCCCEEeeCCC
Q 012207 361 ITCCRKITYASINSITKTCTSLTSLRMECCKLVSWEAFVLIGQQCQYLEELDITENEVNDEGLKSISRCSKLSSLKLGIC 440 (468)
Q Consensus 361 l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~ 440 (468)
+++|.... .. ......++.++.|+++++. ++......+. .+++|++|++++|.++... ..+..+++|+.|++++|
T Consensus 178 l~~n~~~~-~~-~~~~~~~~~l~~L~~s~n~-l~~~~~~~~~-~l~~L~~L~L~~N~L~~lp-~~l~~l~~L~~L~Ls~N 252 (305)
T d1xkua_ 178 LDGNKITK-VD-AASLKGLNNLAKLGLSFNS-ISAVDNGSLA-NTPHLRELHLNNNKLVKVP-GGLADHKYIQVVYLHNN 252 (305)
T ss_dssp CTTSCCCE-EC-TGGGTTCTTCCEEECCSSC-CCEECTTTGG-GSTTCCEEECCSSCCSSCC-TTTTTCSSCCEEECCSS
T ss_pred CCCCcCCC-CC-hhHhhcccccccccccccc-cccccccccc-ccccceeeecccccccccc-cccccccCCCEEECCCC
Confidence 99876332 21 1223568999999999864 5543333333 7899999999999888653 46788999999999999
Q ss_pred CccCHHHHHH-----HHhcCcccCeeecCCCC
Q 012207 441 SNITDEGLKH-----VGSTCSMLKELDLYRFS 467 (468)
Q Consensus 441 ~~l~~~~~~~-----~~~~~~~L~~L~l~~c~ 467 (468)
+|+..+-.. .....++|+.|++.+|+
T Consensus 253 -~i~~i~~~~f~~~~~~~~~~~L~~L~L~~N~ 283 (305)
T d1xkua_ 253 -NISAIGSNDFCPPGYNTKKASYSGVSLFSNP 283 (305)
T ss_dssp -CCCCCCTTSSSCSSCCTTSCCCSEEECCSSS
T ss_pred -ccCccChhhccCcchhcccCCCCEEECCCCc
Confidence 887532111 22356899999999986
|
| >d1ogqa_ c.10.2.8 (A:) Polygalacturonase inhibiting protein PGIP {Kidney bean (Phaseolus vulgaris) [TaxId: 3885]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: L domain-like family: Polygalacturonase inhibiting protein PGIP domain: Polygalacturonase inhibiting protein PGIP species: Kidney bean (Phaseolus vulgaris) [TaxId: 3885]
Probab=99.38 E-value=1.4e-15 Score=133.78 Aligned_cols=231 Identities=13% Similarity=0.077 Sum_probs=138.4
Q ss_pred hhCCCccEeeecc-cCCCCCCccccccCCCCCeeeecCCCCCChHHHHHHHhcCCCCCEEEccCCcccChhhHHHHHhcC
Q 012207 199 LKCQEIRTLDLSY-LPITEKCLPPVVKLQYLEDLVLEGCHGIDDDGLASVEYSCKSLKALNLSKCQNISHVGLSSLIKGA 277 (468)
Q Consensus 199 ~~~~~L~~L~l~~-~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~ 277 (468)
..+++|++|++++ +.+.+..+..+.++++|++|+++++ .+.......+.. +++|+.+++..+..... +...+..+
T Consensus 73 ~~L~~L~~L~Ls~~N~l~g~iP~~i~~L~~L~~L~Ls~N-~l~~~~~~~~~~-~~~L~~l~l~~N~~~~~--~p~~l~~l 148 (313)
T d1ogqa_ 73 ANLPYLNFLYIGGINNLVGPIPPAIAKLTQLHYLYITHT-NVSGAIPDFLSQ-IKTLVTLDFSYNALSGT--LPPSISSL 148 (313)
T ss_dssp GGCTTCSEEEEEEETTEESCCCGGGGGCTTCSEEEEEEE-CCEEECCGGGGG-CTTCCEEECCSSEEESC--CCGGGGGC
T ss_pred hcCccccccccccccccccccccccccccccchhhhccc-cccccccccccc-hhhhccccccccccccc--CchhhccC
Confidence 3566677777765 4555555566667777777777763 232222222223 66777777766542221 11224566
Q ss_pred CccceEeecCCCCCchhHHHHhhcCCCC-CeeEecCCcCChhHHHHHHHhCCCCCeEecccCCCCCHHHHHHHHHhCCCC
Q 012207 278 DYLQQLILAYSFWVSADLSKCLHNFPML-QSIKFEDCPVARSGIKAIGNWHGSLKELSLSKCSGVTDEELSFVVQSHKEL 356 (468)
Q Consensus 278 ~~L~~L~l~~~~~~~~~~~~~l~~~~~L-~~L~l~~~~~~~~~~~~l~~~~~~L~~L~l~~~~~~~~~~l~~~~~~~~~L 356 (468)
+.++.++++++ .+...++..+..+..+ +.+.+.++.+....+..+. . .....+++..+.... .++.....++++
T Consensus 149 ~~L~~l~l~~n-~l~~~ip~~~~~l~~l~~~l~~~~n~l~~~~~~~~~-~-l~~~~l~l~~~~~~~--~~~~~~~~~~~l 223 (313)
T d1ogqa_ 149 PNLVGITFDGN-RISGAIPDSYGSFSKLFTSMTISRNRLTGKIPPTFA-N-LNLAFVDLSRNMLEG--DASVLFGSDKNT 223 (313)
T ss_dssp TTCCEEECCSS-CCEEECCGGGGCCCTTCCEEECCSSEEEEECCGGGG-G-CCCSEEECCSSEEEE--CCGGGCCTTSCC
T ss_pred cccceeecccc-cccccccccccccccccccccccccccccccccccc-c-ccccccccccccccc--cccccccccccc
Confidence 77777777766 3344455556666655 7788887776544433332 2 344567776532211 123334456889
Q ss_pred CeEecCCCCCCCHHHHHHHHhcCCcCCeEEccCCCCCCHHHHHHHHhcCCCCCEEEccCCCCChhhHHhcccCCCCCEEe
Q 012207 357 RKLDITCCRKITYASINSITKTCTSLTSLRMECCKLVSWEAFVLIGQQCQYLEELDITENEVNDEGLKSISRCSKLSSLK 436 (468)
Q Consensus 357 ~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~ 436 (468)
+.++++++..... +. ....+++|+.|+++++. ++......+. .+++|++|++++|.++...+ .++++++|+.++
T Consensus 224 ~~l~~~~~~l~~~--~~-~~~~~~~L~~L~Ls~N~-l~g~iP~~l~-~L~~L~~L~Ls~N~l~g~iP-~~~~L~~L~~l~ 297 (313)
T d1ogqa_ 224 QKIHLAKNSLAFD--LG-KVGLSKNLNGLDLRNNR-IYGTLPQGLT-QLKFLHSLNVSFNNLCGEIP-QGGNLQRFDVSA 297 (313)
T ss_dssp SEEECCSSEECCB--GG-GCCCCTTCCEEECCSSC-CEECCCGGGG-GCTTCCEEECCSSEEEEECC-CSTTGGGSCGGG
T ss_pred ccccccccccccc--cc-ccccccccccccCccCe-ecccCChHHh-CCCCCCEEECcCCcccccCC-CcccCCCCCHHH
Confidence 9999988763221 11 12457899999999854 4432222343 78999999999998885433 355678999999
Q ss_pred eCCCCccC
Q 012207 437 LGICSNIT 444 (468)
Q Consensus 437 l~~~~~l~ 444 (468)
+++|+.+.
T Consensus 298 l~~N~~l~ 305 (313)
T d1ogqa_ 298 YANNKCLC 305 (313)
T ss_dssp TCSSSEEE
T ss_pred hCCCcccc
Confidence 99995454
|
| >d1xkua_ c.10.2.7 (A:) Decorin {Cow (Bos taurus) [TaxId: 9913]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: L domain-like family: Ngr ectodomain-like domain: Decorin species: Cow (Bos taurus) [TaxId: 9913]
Probab=99.34 E-value=6.1e-13 Score=116.12 Aligned_cols=59 Identities=22% Similarity=0.268 Sum_probs=25.7
Q ss_pred CCccEEecCCCCcccHHHHHHhhhcCCCCcEEEccCCCccCHHHHHHHHcCCCCCeEeccCC
Q 012207 99 LTLRSINLSRSRLFTKVGLSSLTVNCRFLTEIDLSNGTEMGDAAAAAIAEAKNLERLWLARC 160 (468)
Q Consensus 99 ~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~L~~L~l~~~ 160 (468)
+++++|+++++. ++.... ..+..+++|++|+++++. +......++..+++|++|++.++
T Consensus 31 ~~l~~L~Ls~N~-i~~l~~-~~f~~l~~L~~L~l~~n~-~~~i~~~~f~~l~~L~~L~l~~n 89 (305)
T d1xkua_ 31 PDTALLDLQNNK-ITEIKD-GDFKNLKNLHTLILINNK-ISKISPGAFAPLVKLERLYLSKN 89 (305)
T ss_dssp TTCCEEECCSSC-CCCBCT-TTTTTCTTCCEEECCSSC-CCCBCTTTTTTCTTCCEEECCSS
T ss_pred CCCCEEECcCCc-CCCcCh-hHhhcccccccccccccc-ccccchhhhhCCCccCEecccCC
Confidence 456666665542 211110 112245556666655552 22222233444555555555443
|
| >d1h6ua2 c.10.2.1 (A:36-262) Internalin H {Listeria monocytogenes [TaxId: 1639]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: L domain-like family: Internalin LRR domain domain: Internalin H species: Listeria monocytogenes [TaxId: 1639]
Probab=99.33 E-value=2.5e-12 Score=106.71 Aligned_cols=190 Identities=19% Similarity=0.193 Sum_probs=98.7
Q ss_pred ccccCCCCCeeeecCCCCCChHHHHHHHhcCCCCCEEEccCCcccChhhHHHHHhcCCccceEeecCCCCCchhHHHHhh
Q 012207 221 PVVKLQYLEDLVLEGCHGIDDDGLASVEYSCKSLKALNLSKCQNISHVGLSSLIKGADYLQQLILAYSFWVSADLSKCLH 300 (468)
Q Consensus 221 ~l~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~l~ 300 (468)
.+..+.+|++|.+.++ .+.+. ..+.. +++|++|+++++....... +..+++++.+++++
T Consensus 36 ~~~~l~~L~~L~l~~~-~i~~l--~~l~~-l~~L~~L~ls~n~i~~~~~----l~~l~~l~~l~~~~------------- 94 (227)
T d1h6ua2 36 TQADLDGITTLSAFGT-GVTTI--EGVQY-LNNLIGLELKDNQITDLAP----LKNLTKITELELSG------------- 94 (227)
T ss_dssp CHHHHHTCCEEECTTS-CCCCC--TTGGG-CTTCCEEECCSSCCCCCGG----GTTCCSCCEEECCS-------------
T ss_pred CHHHcCCcCEEECCCC-CCCcc--hhHhc-CCCCcEeecCCceeecccc----cccccccccccccc-------------
Confidence 4445677777777774 34332 22333 6777777777654221111 33444555555544
Q ss_pred cCCCCCeeEecCCcCChhHHHHHHHhCCCCCeEecccCCCCCHHHHHHHHHhCCCCCeEecCCCCCCCHHHHHHHHhcCC
Q 012207 301 NFPMLQSIKFEDCPVARSGIKAIGNWHGSLKELSLSKCSGVTDEELSFVVQSHKELRKLDITCCRKITYASINSITKTCT 380 (468)
Q Consensus 301 ~~~~L~~L~l~~~~~~~~~~~~l~~~~~~L~~L~l~~~~~~~~~~l~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~ 380 (468)
+.+++.. .+. .+++|+.+.++++...... . +...+.++.+.++++....... ...++
T Consensus 95 ------------n~~~~i~--~l~-~l~~L~~l~l~~~~~~~~~---~-~~~~~~~~~l~~~~~~~~~~~~----~~~~~ 151 (227)
T d1h6ua2 95 ------------NPLKNVS--AIA-GLQSIKTLDLTSTQITDVT---P-LAGLSNLQVLYLDLNQITNISP----LAGLT 151 (227)
T ss_dssp ------------CCCSCCG--GGT-TCTTCCEEECTTSCCCCCG---G-GTTCTTCCEEECCSSCCCCCGG----GGGCT
T ss_pred ------------ccccccc--ccc-ccccccccccccccccccc---h-hccccchhhhhchhhhhchhhh----hcccc
Confidence 4333211 111 3455555555543322111 1 2234556666665544222111 13456
Q ss_pred cCCeEEccCCCCCCHHHHHHHHhcCCCCCEEEccCCCCChhhHHhcccCCCCCEEeeCCCCccCHHHHHHHHhcCcccCe
Q 012207 381 SLTSLRMECCKLVSWEAFVLIGQQCQYLEELDITENEVNDEGLKSISRCSKLSSLKLGICSNITDEGLKHVGSTCSMLKE 460 (468)
Q Consensus 381 ~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~~L~~ 460 (468)
+|++|.+++|....... +. .+++|++|++++|.+++. ..++++++|++|++++| ++++ +.. .+.+++|+.
T Consensus 152 ~L~~L~l~~n~~~~~~~---l~-~l~~L~~L~Ls~n~l~~l--~~l~~l~~L~~L~Ls~N-~lt~--i~~-l~~l~~L~~ 221 (227)
T d1h6ua2 152 NLQYLSIGNAQVSDLTP---LA-NLSKLTTLKADDNKISDI--SPLASLPNLIEVHLKNN-QISD--VSP-LANTSNLFI 221 (227)
T ss_dssp TCCEEECCSSCCCCCGG---GT-TCTTCCEEECCSSCCCCC--GGGGGCTTCCEEECTTS-CCCB--CGG-GTTCTTCCE
T ss_pred ccccccccccccccchh---hc-ccccceecccCCCccCCC--hhhcCCCCCCEEECcCC-cCCC--Ccc-cccCCCCCE
Confidence 67777766644221122 22 667777777777777653 33666777777777777 6764 222 346777777
Q ss_pred eecC
Q 012207 461 LDLY 464 (468)
Q Consensus 461 L~l~ 464 (468)
|+|+
T Consensus 222 L~ls 225 (227)
T d1h6ua2 222 VTLT 225 (227)
T ss_dssp EEEE
T ss_pred EEee
Confidence 7765
|
| >d1ozna_ c.10.2.7 (A:) Reticulon 4 receptor (Nogo-66 receptor, Ngr) {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: L domain-like family: Ngr ectodomain-like domain: Reticulon 4 receptor (Nogo-66 receptor, Ngr) species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.32 E-value=1.5e-13 Score=118.65 Aligned_cols=85 Identities=16% Similarity=0.090 Sum_probs=44.3
Q ss_pred hCCCCCeEecCCCCCCCHHHHHHHHhcCCcCCeEEccCCCCCCHHHHHHHHhcCCCCCEEEccCCCCChhhHHhcccCCC
Q 012207 352 SHKELRKLDITCCRKITYASINSITKTCTSLTSLRMECCKLVSWEAFVLIGQQCQYLEELDITENEVNDEGLKSISRCSK 431 (468)
Q Consensus 352 ~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~ 431 (468)
.+++|+.|++++|. ++.... .....+++|+.+.++++. ++......+ ..+++|+.|++++|.+.......+..+++
T Consensus 151 ~~~~L~~L~l~~N~-l~~l~~-~~f~~l~~L~~l~l~~N~-l~~i~~~~f-~~l~~L~~L~l~~N~i~~~~~~~~~~~~~ 226 (284)
T d1ozna_ 151 DLGNLTHLFLHGNR-ISSVPE-RAFRGLHSLDRLLLHQNR-VAHVHPHAF-RDLGRLMTLYLFANNLSALPTEALAPLRA 226 (284)
T ss_dssp TCTTCCEEECCSSC-CCEECT-TTTTTCTTCCEEECCSSC-CCEECTTTT-TTCTTCCEEECCSSCCSCCCHHHHTTCTT
T ss_pred cccchhhcccccCc-ccccch-hhhccccccchhhhhhcc-ccccChhHh-hhhhhcccccccccccccccccccccccc
Confidence 34555555555543 221111 111245666666666533 332211222 25666677777666666666566666666
Q ss_pred CCEEeeCCC
Q 012207 432 LSSLKLGIC 440 (468)
Q Consensus 432 L~~L~l~~~ 440 (468)
|+.|++++|
T Consensus 227 L~~L~l~~N 235 (284)
T d1ozna_ 227 LQYLRLNDN 235 (284)
T ss_dssp CCEEECCSS
T ss_pred cCEEEecCC
Confidence 777777665
|
| >d1p9ag_ c.10.2.7 (G:) von Willebrand factor binding domain of glycoprotein Ib alpha {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: L domain-like family: Ngr ectodomain-like domain: von Willebrand factor binding domain of glycoprotein Ib alpha species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.29 E-value=1.5e-13 Score=117.22 Aligned_cols=177 Identities=16% Similarity=0.084 Sum_probs=96.5
Q ss_pred CCCCEEEccCCcccChhhHHHHHhcCCccceEeecCCCCCchhHHHHhhcCCCCCeeEecCCcCChhHHHHHHHhCCCCC
Q 012207 252 KSLKALNLSKCQNISHVGLSSLIKGADYLQQLILAYSFWVSADLSKCLHNFPMLQSIKFEDCPVARSGIKAIGNWHGSLK 331 (468)
Q Consensus 252 ~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~l~~~~~~L~ 331 (468)
++++.|+++++. +.... ...+..+++|++|+++++. +.. ...++.+++|+.|++++|.+..... ....+++|+
T Consensus 31 ~~l~~L~Ls~N~-i~~l~-~~~f~~l~~L~~L~L~~N~-l~~--l~~~~~l~~L~~L~Ls~N~l~~~~~--~~~~l~~L~ 103 (266)
T d1p9ag_ 31 KDTTILHLSENL-LYTFS-LATLMPYTRLTQLNLDRAE-LTK--LQVDGTLPVLGTLDLSHNQLQSLPL--LGQTLPALT 103 (266)
T ss_dssp TTCCEEECTTSC-CSEEE-GGGGTTCTTCCEEECTTSC-CCE--EECCSCCTTCCEEECCSSCCSSCCC--CTTTCTTCC
T ss_pred cCCCEEECcCCc-CCCcC-HHHhhcccccccccccccc-ccc--ccccccccccccccccccccccccc--ccccccccc
Confidence 468888888775 22211 1224567778888887763 321 1123567777788877776653211 122566777
Q ss_pred eEecccCCCCCHHHHHHHHHhCCCCCeEecCCCCCCCHHHHHHHHhcCCcCCeEEccCCCCCCHHHHHHHHhcCCCCCEE
Q 012207 332 ELSLSKCSGVTDEELSFVVQSHKELRKLDITCCRKITYASINSITKTCTSLTSLRMECCKLVSWEAFVLIGQQCQYLEEL 411 (468)
Q Consensus 332 ~L~l~~~~~~~~~~l~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L 411 (468)
.|+++++.. ... .......+++++.|.+++|. +.... ......+++|+.++++++. ++......+. .+++|++|
T Consensus 104 ~L~l~~~~~-~~~-~~~~~~~l~~l~~L~l~~n~-l~~l~-~~~~~~l~~l~~l~l~~N~-l~~~~~~~~~-~l~~L~~L 177 (266)
T d1p9ag_ 104 VLDVSFNRL-TSL-PLGALRGLGELQELYLKGNE-LKTLP-PGLLTPTPKLEKLSLANNN-LTELPAGLLN-GLENLDTL 177 (266)
T ss_dssp EEECCSSCC-CCC-CSSTTTTCTTCCEEECTTSC-CCCCC-TTTTTTCTTCCEEECTTSC-CSCCCTTTTT-TCTTCCEE
T ss_pred ccccccccc-cee-eccccccccccccccccccc-cceec-cccccccccchhccccccc-ccccCccccc-ccccccee
Confidence 777776432 111 01122345677777777654 22111 1112345677777777643 4332222222 56777777
Q ss_pred EccCCCCChhhHHhcccCCCCCEEeeCCCCc
Q 012207 412 DITENEVNDEGLKSISRCSKLSSLKLGICSN 442 (468)
Q Consensus 412 ~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~ 442 (468)
++++|.++.. ...+..+++|+.|++++|+-
T Consensus 178 ~Ls~N~L~~l-p~~~~~~~~L~~L~L~~Np~ 207 (266)
T d1p9ag_ 178 LLQENSLYTI-PKGFFGSHLLPFAFLHGNPW 207 (266)
T ss_dssp ECCSSCCCCC-CTTTTTTCCCSEEECCSCCB
T ss_pred ecccCCCccc-ChhHCCCCCCCEEEecCCCC
Confidence 7777766643 23444566777777776643
|
| >d2omxa2 c.10.2.1 (A:37-235) Internalin B {Listeria monocytogenes [TaxId: 1639]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: L domain-like family: Internalin LRR domain domain: Internalin B species: Listeria monocytogenes [TaxId: 1639]
Probab=99.28 E-value=5e-12 Score=102.28 Aligned_cols=160 Identities=15% Similarity=0.153 Sum_probs=99.4
Q ss_pred CccceEeecCCCCCchhHHHHhhcCCCCCeeEecCCcCChhHHHHHHHhCCCCCeEecccCCCCCHHHHHHHHHhCCCCC
Q 012207 278 DYLQQLILAYSFWVSADLSKCLHNFPMLQSIKFEDCPVARSGIKAIGNWHGSLKELSLSKCSGVTDEELSFVVQSHKELR 357 (468)
Q Consensus 278 ~~L~~L~l~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~l~~~~~~L~~L~l~~~~~~~~~~l~~~~~~~~~L~ 357 (468)
+++++|+++++.. .. ...++.+++|++|++++|.+++... +. .+++|++|+++++....- .. +..+++|+
T Consensus 40 ~~l~~L~l~~~~i-~~--l~~l~~l~nL~~L~Ls~N~l~~~~~--l~-~l~~L~~L~l~~n~~~~~---~~-l~~l~~L~ 109 (199)
T d2omxa2 40 DQVTTLQADRLGI-KS--IDGVEYLNNLTQINFSNNQLTDITP--LK-NLTKLVDILMNNNQIADI---TP-LANLTNLT 109 (199)
T ss_dssp TTCCEEECTTSCC-CC--CTTGGGCTTCCEEECCSSCCCCCGG--GT-TCTTCCEEECCSSCCCCC---GG-GTTCTTCS
T ss_pred cCCCEEECCCCCC-CC--ccccccCCCcCcCccccccccCccc--cc-CCcccccccccccccccc---cc-cccccccc
Confidence 3455555554421 11 1234566777777777776654322 22 567777777776533221 11 45677888
Q ss_pred eEecCCCCCCCHHHHHHHHhcCCcCCeEEccCCCCCCHHHHHHHHhcCCCCCEEEccCCCCChhhHHhcccCCCCCEEee
Q 012207 358 KLDITCCRKITYASINSITKTCTSLTSLRMECCKLVSWEAFVLIGQQCQYLEELDITENEVNDEGLKSISRCSKLSSLKL 437 (468)
Q Consensus 358 ~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l 437 (468)
.|++++|......+ ...+++|+.|+++++. +.. +..+. .+++|+.|++.+|.+++. ..++++++|+.|++
T Consensus 110 ~L~l~~~~~~~~~~----~~~l~~L~~L~l~~n~-l~~--~~~l~-~~~~L~~L~l~~n~l~~l--~~l~~l~~L~~L~l 179 (199)
T d2omxa2 110 GLTLFNNQITDIDP----LKNLTNLNRLELSSNT-ISD--ISALS-GLTSLQQLNFSSNQVTDL--KPLANLTTLERLDI 179 (199)
T ss_dssp EEECCSSCCCCCGG----GTTCTTCSEEECCSSC-CCC--CGGGT-TCTTCSEEECCSSCCCCC--GGGTTCTTCCEEEC
T ss_pred cccccccccccccc----cchhhhhHHhhhhhhh-hcc--ccccc-ccccccccccccccccCC--ccccCCCCCCEEEC
Confidence 88887766443222 2367888888888754 332 22233 778888999888888764 34778889999999
Q ss_pred CCCCccCHHHHHHHHhcCcccCee
Q 012207 438 GICSNITDEGLKHVGSTCSMLKEL 461 (468)
Q Consensus 438 ~~~~~l~~~~~~~~~~~~~~L~~L 461 (468)
++| ++++ +.. ...+++|++|
T Consensus 180 s~N-~i~~--i~~-l~~L~~L~~L 199 (199)
T d2omxa2 180 SSN-KVSD--ISV-LAKLTNLESL 199 (199)
T ss_dssp CSS-CCCC--CGG-GGGCTTCSEE
T ss_pred CCC-CCCC--Ccc-ccCCCCCCcC
Confidence 988 7875 333 3468888775
|
| >d1ozna_ c.10.2.7 (A:) Reticulon 4 receptor (Nogo-66 receptor, Ngr) {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: L domain-like family: Ngr ectodomain-like domain: Reticulon 4 receptor (Nogo-66 receptor, Ngr) species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.27 E-value=8.3e-13 Score=113.84 Aligned_cols=36 Identities=22% Similarity=0.122 Sum_probs=17.2
Q ss_pred hCCCccEeeecccCCCCCCccccccCCCCCeeeecC
Q 012207 200 KCQEIRTLDLSYLPITEKCLPPVVKLQYLEDLVLEG 235 (468)
Q Consensus 200 ~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~ 235 (468)
.+++|++|+++++.+.......+...++|+.+++.+
T Consensus 103 ~l~~L~~L~l~~n~~~~~~~~~~~~~~~L~~l~l~~ 138 (284)
T d1ozna_ 103 GLGRLHTLHLDRCGLQELGPGLFRGLAALQYLYLQD 138 (284)
T ss_dssp TCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECCS
T ss_pred ccccCCEEecCCcccccccccccchhcccchhhhcc
Confidence 445555555555544333333333445555555554
|
| >d1h6ua2 c.10.2.1 (A:36-262) Internalin H {Listeria monocytogenes [TaxId: 1639]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: L domain-like family: Internalin LRR domain domain: Internalin H species: Listeria monocytogenes [TaxId: 1639]
Probab=99.26 E-value=1.8e-11 Score=101.42 Aligned_cols=188 Identities=19% Similarity=0.145 Sum_probs=116.0
Q ss_pred hCCCccEeeecccCCCCCCccccccCCCCCeeeecCCCCCChHHHHHHHhcCCCCCEEEccCCcccChhhHHHHHhcCCc
Q 012207 200 KCQEIRTLDLSYLPITEKCLPPVVKLQYLEDLVLEGCHGIDDDGLASVEYSCKSLKALNLSKCQNISHVGLSSLIKGADY 279 (468)
Q Consensus 200 ~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~ 279 (468)
.+.+|+.|++.++.+.+ +..+.++++|++|+++++. +.... .+.. +++++.+.+.++....-.+ +..+++
T Consensus 39 ~l~~L~~L~l~~~~i~~--l~~l~~l~~L~~L~ls~n~-i~~~~--~l~~-l~~l~~l~~~~n~~~~i~~----l~~l~~ 108 (227)
T d1h6ua2 39 DLDGITTLSAFGTGVTT--IEGVQYLNNLIGLELKDNQ-ITDLA--PLKN-LTKITELELSGNPLKNVSA----IAGLQS 108 (227)
T ss_dssp HHHTCCEEECTTSCCCC--CTTGGGCTTCCEEECCSSC-CCCCG--GGTT-CCSCCEEECCSCCCSCCGG----GTTCTT
T ss_pred HcCCcCEEECCCCCCCc--chhHhcCCCCcEeecCCce-eeccc--cccc-ccccccccccccccccccc----cccccc
Confidence 45789999999998864 4678899999999999954 44322 2444 8999999999875322111 234555
Q ss_pred cceEeecCCCCCchhHHHHhhcCCCCCeeEecCCcCChhHHHHHHHhCCCCCeEecccCCCCCHHHHHHHHHhCCCCCeE
Q 012207 280 LQQLILAYSFWVSADLSKCLHNFPMLQSIKFEDCPVARSGIKAIGNWHGSLKELSLSKCSGVTDEELSFVVQSHKELRKL 359 (468)
Q Consensus 280 L~~L~l~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~l~~~~~~L~~L~l~~~~~~~~~~l~~~~~~~~~L~~L 359 (468)
|+.+.++++..... ..+. ..+.++.+.++++...... .+..+++|+.|
T Consensus 109 L~~l~l~~~~~~~~---~~~~-------------------------~~~~~~~l~~~~~~~~~~~----~~~~~~~L~~L 156 (227)
T d1h6ua2 109 IKTLDLTSTQITDV---TPLA-------------------------GLSNLQVLYLDLNQITNIS----PLAGLTNLQYL 156 (227)
T ss_dssp CCEEECTTSCCCCC---GGGT-------------------------TCTTCCEEECCSSCCCCCG----GGGGCTTCCEE
T ss_pred cccccccccccccc---chhc-------------------------cccchhhhhchhhhhchhh----hhccccccccc
Confidence 66666555422110 1122 3345555555543221111 13355667777
Q ss_pred ecCCCCCCCHHHHHHHHhcCCcCCeEEccCCCCCCHHHHHHHHhcCCCCCEEEccCCCCChhhHHhcccCCCCCEEeeCC
Q 012207 360 DITCCRKITYASINSITKTCTSLTSLRMECCKLVSWEAFVLIGQQCQYLEELDITENEVNDEGLKSISRCSKLSSLKLGI 439 (468)
Q Consensus 360 ~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~ 439 (468)
++++|......+ ..++++|+.|++++| .+++ +..+. .+++|++|++++|.+++.. .++.+++|+.|++++
T Consensus 157 ~l~~n~~~~~~~----l~~l~~L~~L~Ls~n-~l~~--l~~l~-~l~~L~~L~Ls~N~lt~i~--~l~~l~~L~~L~lsn 226 (227)
T d1h6ua2 157 SIGNAQVSDLTP----LANLSKLTTLKADDN-KISD--ISPLA-SLPNLIEVHLKNNQISDVS--PLANTSNLFIVTLTN 226 (227)
T ss_dssp ECCSSCCCCCGG----GTTCTTCCEEECCSS-CCCC--CGGGG-GCTTCCEEECTTSCCCBCG--GGTTCTTCCEEEEEE
T ss_pred cccccccccchh----hcccccceecccCCC-ccCC--Chhhc-CCCCCCEEECcCCcCCCCc--ccccCCCCCEEEeeC
Confidence 776654222111 245777888888775 3443 22233 7888999999888888753 477888898888863
|
| >d1fs1a1 a.158.1.1 (A:109-149) Skp2 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: F-box domain superfamily: F-box domain family: F-box domain domain: Skp2 species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.26 E-value=2e-12 Score=72.97 Aligned_cols=37 Identities=22% Similarity=0.383 Sum_probs=34.4
Q ss_pred cccCcHHHHHHHHhhhcCChhhhhHHhhhhhhHHHHHHh
Q 012207 12 FDFLSEEIIFNILDHLNNDPFARKSFSLTCRNFYSIESR 50 (468)
Q Consensus 12 ~~~LP~eil~~I~~~~l~~~~~~~~~~~v~~~w~~~~~~ 50 (468)
|+.||+||+.+||+ ||+ .+|+.++++|||+|++++.+
T Consensus 1 f~~LP~eil~~If~-~L~-~~dl~~~~~Vcr~w~~l~~~ 37 (41)
T d1fs1a1 1 WDSLPDELLLGIFS-CLC-LPELLKVSGVCKRWYRLASD 37 (41)
T ss_dssp CCSSCHHHHHHHHT-TSC-GGGHHHHHTTCHHHHHHHTC
T ss_pred CCcCCHHHHHHHHH-cCC-HHHHHHHHHHHHHHHHHhCC
Confidence 57899999999999 997 99999999999999998754
|
| >d1h6ta2 c.10.2.1 (A:31-240) Internalin B {Listeria monocytogenes [TaxId: 1639]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: L domain-like family: Internalin LRR domain domain: Internalin B species: Listeria monocytogenes [TaxId: 1639]
Probab=99.21 E-value=2e-11 Score=99.59 Aligned_cols=162 Identities=20% Similarity=0.241 Sum_probs=101.7
Q ss_pred ccceEeecCCCCCchhHHHHhhcCCCCCeeEecCCcCChhHHHHHHHhCCCCCeEecccCCCCCHHHHHHHHHhCCCCCe
Q 012207 279 YLQQLILAYSFWVSADLSKCLHNFPMLQSIKFEDCPVARSGIKAIGNWHGSLKELSLSKCSGVTDEELSFVVQSHKELRK 358 (468)
Q Consensus 279 ~L~~L~l~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~l~~~~~~L~~L~l~~~~~~~~~~l~~~~~~~~~L~~ 358 (468)
+|+.|+++++.. .. ...+..+++|++|++++|.+++.. .+. .+++|+.|+++++ .+++ +.. +..+++|+.
T Consensus 47 ~L~~L~l~~~~i-~~--l~~l~~l~~L~~L~L~~n~i~~l~--~~~-~l~~L~~L~l~~n-~i~~--l~~-l~~l~~L~~ 116 (210)
T d1h6ta2 47 SIDQIIANNSDI-KS--VQGIQYLPNVTKLFLNGNKLTDIK--PLA-NLKNLGWLFLDEN-KVKD--LSS-LKDLKKLKS 116 (210)
T ss_dssp TCCEEECTTSCC-CC--CTTGGGCTTCCEEECCSSCCCCCG--GGT-TCTTCCEEECCSS-CCCC--GGG-GTTCTTCCE
T ss_pred CccEEECcCCCC-CC--chhHhhCCCCCEEeCCCccccCcc--ccc-cCccccccccccc-cccc--ccc-ccccccccc
Confidence 455666655422 11 113556777777777777766432 122 5677888888774 4543 222 445678888
Q ss_pred EecCCCCCCCHHHHHHHHhcCCcCCeEEccCCCCCCHHHHHHHHhcCCCCCEEEccCCCCChhhHHhcccCCCCCEEeeC
Q 012207 359 LDITCCRKITYASINSITKTCTSLTSLRMECCKLVSWEAFVLIGQQCQYLEELDITENEVNDEGLKSISRCSKLSSLKLG 438 (468)
Q Consensus 359 L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~ 438 (468)
|++++|..... .. ...+++++.+.++++. +++.. .+ ..+++|+.+++++|.+++. ..++.+++|+.|+++
T Consensus 117 L~l~~~~~~~~---~~-l~~l~~l~~l~~~~n~-l~~~~--~~-~~l~~L~~l~l~~n~l~~i--~~l~~l~~L~~L~Ls 186 (210)
T d1h6ta2 117 LSLEHNGISDI---NG-LVHLPQLESLYLGNNK-ITDIT--VL-SRLTKLDTLSLEDNQISDI--VPLAGLTKLQNLYLS 186 (210)
T ss_dssp EECTTSCCCCC---GG-GGGCTTCCEEECCSSC-CCCCG--GG-GGCTTCSEEECCSSCCCCC--GGGTTCTTCCEEECC
T ss_pred ccccccccccc---cc-cccccccccccccccc-ccccc--cc-ccccccccccccccccccc--ccccCCCCCCEEECC
Confidence 88877653321 11 2357788888887743 44321 22 2678888888888887764 346778888888888
Q ss_pred CCCccCHHHHHHHHhcCcccCeeecC
Q 012207 439 ICSNITDEGLKHVGSTCSMLKELDLY 464 (468)
Q Consensus 439 ~~~~l~~~~~~~~~~~~~~L~~L~l~ 464 (468)
+| .+++ +.. ...+++|+.|+|+
T Consensus 187 ~N-~i~~--l~~-l~~l~~L~~L~Ls 208 (210)
T d1h6ta2 187 KN-HISD--LRA-LAGLKNLDVLELF 208 (210)
T ss_dssp SS-CCCB--CGG-GTTCTTCSEEEEE
T ss_pred CC-CCCC--Chh-hcCCCCCCEEEcc
Confidence 88 7774 343 3478888888875
|
| >d1h6ta2 c.10.2.1 (A:31-240) Internalin B {Listeria monocytogenes [TaxId: 1639]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: L domain-like family: Internalin LRR domain domain: Internalin B species: Listeria monocytogenes [TaxId: 1639]
Probab=99.17 E-value=1e-10 Score=95.32 Aligned_cols=124 Identities=21% Similarity=0.215 Sum_probs=81.6
Q ss_pred hhcCCCCCeeEecCCcCChhHHHHHHHhCCCCCeEecccCCCCCHHHHHHHHHhCCCCCeEecCCCCCCCHHHHHHHHhc
Q 012207 299 LHNFPMLQSIKFEDCPVARSGIKAIGNWHGSLKELSLSKCSGVTDEELSFVVQSHKELRKLDITCCRKITYASINSITKT 378 (468)
Q Consensus 299 l~~~~~L~~L~l~~~~~~~~~~~~l~~~~~~L~~L~l~~~~~~~~~~l~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~ 378 (468)
+..+++|+.|++++|.+++.. .+. .+++|+.|+++++.... +. .+..+++++.+.++++. +++.. ....
T Consensus 86 ~~~l~~L~~L~l~~n~i~~l~--~l~-~l~~L~~L~l~~~~~~~---~~-~l~~l~~l~~l~~~~n~-l~~~~---~~~~ 154 (210)
T d1h6ta2 86 LANLKNLGWLFLDENKVKDLS--SLK-DLKKLKSLSLEHNGISD---IN-GLVHLPQLESLYLGNNK-ITDIT---VLSR 154 (210)
T ss_dssp GTTCTTCCEEECCSSCCCCGG--GGT-TCTTCCEEECTTSCCCC---CG-GGGGCTTCCEEECCSSC-CCCCG---GGGG
T ss_pred cccCccccccccccccccccc--ccc-ccccccccccccccccc---cc-ccccccccccccccccc-ccccc---cccc
Confidence 345666777777766665422 222 56777777777753322 11 24467788888887765 33221 1246
Q ss_pred CCcCCeEEccCCCCCCHHHHHHHHhcCCCCCEEEccCCCCChhhHHhcccCCCCCEEeeCC
Q 012207 379 CTSLTSLRMECCKLVSWEAFVLIGQQCQYLEELDITENEVNDEGLKSISRCSKLSSLKLGI 439 (468)
Q Consensus 379 ~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~ 439 (468)
+++|+.++++++. +++ +..+. .+++|++|++++|.+++. ..+..+++|+.|++++
T Consensus 155 l~~L~~l~l~~n~-l~~--i~~l~-~l~~L~~L~Ls~N~i~~l--~~l~~l~~L~~L~Ls~ 209 (210)
T d1h6ta2 155 LTKLDTLSLEDNQ-ISD--IVPLA-GLTKLQNLYLSKNHISDL--RALAGLKNLDVLELFS 209 (210)
T ss_dssp CTTCSEEECCSSC-CCC--CGGGT-TCTTCCEEECCSSCCCBC--GGGTTCTTCSEEEEEE
T ss_pred ccccccccccccc-ccc--ccccc-CCCCCCEEECCCCCCCCC--hhhcCCCCCCEEEccC
Confidence 7889999998854 443 22233 789999999999998874 3578899999999874
|
| >d2omxa2 c.10.2.1 (A:37-235) Internalin B {Listeria monocytogenes [TaxId: 1639]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: L domain-like family: Internalin LRR domain domain: Internalin B species: Listeria monocytogenes [TaxId: 1639]
Probab=99.17 E-value=8.7e-11 Score=94.82 Aligned_cols=120 Identities=23% Similarity=0.271 Sum_probs=75.7
Q ss_pred hhcCCCCCeeEecCCcCChhHHHHHHHhCCCCCeEecccCCCCCHHHHHHHHHhCCCCCeEecCCCCCCCHHHHHHHHhc
Q 012207 299 LHNFPMLQSIKFEDCPVARSGIKAIGNWHGSLKELSLSKCSGVTDEELSFVVQSHKELRKLDITCCRKITYASINSITKT 378 (468)
Q Consensus 299 l~~~~~L~~L~l~~~~~~~~~~~~l~~~~~~L~~L~l~~~~~~~~~~l~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~ 378 (468)
++++++|++|++.+|.+.... .+. .+++|+.|+++++...... .+..+++|+.|++++|. +... .. ...
T Consensus 80 l~~l~~L~~L~l~~n~~~~~~--~l~-~l~~L~~L~l~~~~~~~~~----~~~~l~~L~~L~l~~n~-l~~~--~~-l~~ 148 (199)
T d2omxa2 80 LKNLTKLVDILMNNNQIADIT--PLA-NLTNLTGLTLFNNQITDID----PLKNLTNLNRLELSSNT-ISDI--SA-LSG 148 (199)
T ss_dssp GTTCTTCCEEECCSSCCCCCG--GGT-TCTTCSEEECCSSCCCCCG----GGTTCTTCSEEECCSSC-CCCC--GG-GTT
T ss_pred ccCCccccccccccccccccc--ccc-ccccccccccccccccccc----ccchhhhhHHhhhhhhh-hccc--cc-ccc
Confidence 455666666666666544322 122 5677777777765433321 13456788888888765 3321 11 246
Q ss_pred CCcCCeEEccCCCCCCHHHHHHHHhcCCCCCEEEccCCCCChhhHHhcccCCCCCEE
Q 012207 379 CTSLTSLRMECCKLVSWEAFVLIGQQCQYLEELDITENEVNDEGLKSISRCSKLSSL 435 (468)
Q Consensus 379 ~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L 435 (468)
+++|+.|++.+|. +++. ..+. .+++|++|++++|.+++. ..++++++|++|
T Consensus 149 ~~~L~~L~l~~n~-l~~l--~~l~-~l~~L~~L~ls~N~i~~i--~~l~~L~~L~~L 199 (199)
T d2omxa2 149 LTSLQQLNFSSNQ-VTDL--KPLA-NLTTLERLDISSNKVSDI--SVLAKLTNLESL 199 (199)
T ss_dssp CTTCSEEECCSSC-CCCC--GGGT-TCTTCCEEECCSSCCCCC--GGGGGCTTCSEE
T ss_pred ccccccccccccc-ccCC--cccc-CCCCCCEEECCCCCCCCC--ccccCCCCCCcC
Confidence 7888888888754 4432 2233 789999999999998874 357788888876
|
| >d1p9ag_ c.10.2.7 (G:) von Willebrand factor binding domain of glycoprotein Ib alpha {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: L domain-like family: Ngr ectodomain-like domain: von Willebrand factor binding domain of glycoprotein Ib alpha species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.05 E-value=2.2e-11 Score=103.48 Aligned_cols=36 Identities=28% Similarity=0.372 Sum_probs=19.4
Q ss_pred hCCCccEeeecccCCCCCCccccccCCCCCeeeecC
Q 012207 200 KCQEIRTLDLSYLPITEKCLPPVVKLQYLEDLVLEG 235 (468)
Q Consensus 200 ~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~ 235 (468)
.+++|+.|+++++.+.......+..++++++|.+.+
T Consensus 98 ~l~~L~~L~l~~~~~~~~~~~~~~~l~~l~~L~l~~ 133 (266)
T d1p9ag_ 98 TLPALTVLDVSFNRLTSLPLGALRGLGELQELYLKG 133 (266)
T ss_dssp TCTTCCEEECCSSCCCCCCSSTTTTCTTCCEEECTT
T ss_pred cccccccccccccccceeeccccccccccccccccc
Confidence 455666666665554443334444555566666555
|
| >d1a9na_ c.10.2.4 (A:) Splicesomal U2A' protein {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: L domain-like family: U2A'-like domain: Splicesomal U2A' protein species: Human (Homo sapiens) [TaxId: 9606]
Probab=98.97 E-value=7.2e-11 Score=91.33 Aligned_cols=58 Identities=21% Similarity=0.170 Sum_probs=28.7
Q ss_pred cCCCCCEEEccCCCCChh-hHHhcccCCCCCEEeeCCCCccCHH-HH-HHHHhcCcccCeee
Q 012207 404 QCQYLEELDITENEVNDE-GLKSISRCSKLSSLKLGICSNITDE-GL-KHVGSTCSMLKELD 462 (468)
Q Consensus 404 ~~~~L~~L~l~~~~~~~~-~~~~l~~~~~L~~L~l~~~~~l~~~-~~-~~~~~~~~~L~~L~ 462 (468)
.+++|+.|++++|.+++. .+..+..+++|+.|++++| .++.. .. ......+|+|+.|+
T Consensus 85 ~l~~L~~L~L~~N~i~~~~~l~~l~~l~~L~~L~l~~N-~i~~~~~~r~~~i~~lp~L~~LD 145 (162)
T d1a9na_ 85 ALPDLTELILTNNSLVELGDLDPLASLKSLTYLCILRN-PVTNKKHYRLYVIYKVPQVRVLD 145 (162)
T ss_dssp HCTTCCEEECCSCCCCCGGGGGGGGGCTTCCEEECCSS-GGGGSTTHHHHHHHHCTTCSEET
T ss_pred cccccccceeccccccccccccccccccccchhhcCCC-ccccccchHHHHHHHCCCcCeeC
Confidence 455666666666555542 2234455566666666666 44321 11 12233556666554
|
| >d1jl5a_ c.10.2.6 (A:) Leucine rich effector protein YopM {Yersinia pestis [TaxId: 632]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: L domain-like family: Leucine rich effector protein YopM domain: Leucine rich effector protein YopM species: Yersinia pestis [TaxId: 632]
Probab=98.95 E-value=2.9e-10 Score=101.09 Aligned_cols=295 Identities=14% Similarity=0.093 Sum_probs=149.2
Q ss_pred CCccEEecCCCCcccHHHHHHhhhcCCCCcEEEccCCCccCHHHHHHHHcCCCCCeEeccCCcccChHhHHHHHhcCCCC
Q 012207 99 LTLRSINLSRSRLFTKVGLSSLTVNCRFLTEIDLSNGTEMGDAAAAAIAEAKNLERLWLARCKLITDLGIGRIAACCRKL 178 (468)
Q Consensus 99 ~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L 178 (468)
.++++|+++++. ++. ++ ...++|++|+++++ .+++.+ ....+|++|++.++. ++. +....+.|
T Consensus 38 ~~l~~LdLs~~~-L~~--lp---~~~~~L~~L~Ls~N-~l~~lp----~~~~~L~~L~l~~n~-l~~-----l~~lp~~L 100 (353)
T d1jl5a_ 38 RQAHELELNNLG-LSS--LP---ELPPHLESLVASCN-SLTELP----ELPQSLKSLLVDNNN-LKA-----LSDLPPLL 100 (353)
T ss_dssp HTCSEEECTTSC-CSC--CC---SCCTTCSEEECCSS-CCSSCC----CCCTTCCEEECCSSC-CSC-----CCSCCTTC
T ss_pred cCCCEEEeCCCC-CCC--CC---CCCCCCCEEECCCC-CCcccc----cchhhhhhhhhhhcc-cch-----hhhhcccc
Confidence 568889988764 321 12 24578899999876 455432 124678888888754 222 11112468
Q ss_pred cEEeccCCCCCChHHHHHHHhhCCCccEeeecccCCCCCCccccccCCCCCeeeecCCCCCChHHHHHHHhcCCCCCEEE
Q 012207 179 KLLCLKWCIRVTDLGVELVALKCQEIRTLDLSYLPITEKCLPPVVKLQYLEDLVLEGCHGIDDDGLASVEYSCKSLKALN 258 (468)
Q Consensus 179 ~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~~L~~L~ 258 (468)
++|+++++. +...+ . ...+++|+.|++.++.+.... ...+.+..+.+..+....... +. .++.++.+.
T Consensus 101 ~~L~L~~n~-l~~lp--~-~~~l~~L~~L~l~~~~~~~~~----~~~~~l~~l~~~~~~~~~~~~---l~-~l~~l~~L~ 168 (353)
T d1jl5a_ 101 EYLGVSNNQ-LEKLP--E-LQNSSFLKIIDVDNNSLKKLP----DLPPSLEFIAAGNNQLEELPE---LQ-NLPFLTAIY 168 (353)
T ss_dssp CEEECCSSC-CSSCC--C-CTTCTTCCEEECCSSCCSCCC----CCCTTCCEEECCSSCCSSCCC---CT-TCTTCCEEE
T ss_pred ccccccccc-ccccc--c-hhhhccceeeccccccccccc----cccccccchhhcccccccccc---cc-ccccceecc
Confidence 888887763 33322 1 235678888888776543211 123455555554432222111 12 267777787
Q ss_pred ccCCcccChhhHHHHHhcCCccceEeecCCCCCchhHHHHhhcCCCCCeeEecCCcCChhHHHHHHHhCCCCCeEecccC
Q 012207 259 LSKCQNISHVGLSSLIKGADYLQQLILAYSFWVSADLSKCLHNFPMLQSIKFEDCPVARSGIKAIGNWHGSLKELSLSKC 338 (468)
Q Consensus 259 l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~l~~~~~~L~~L~l~~~ 338 (468)
+..+...... ......+.+...... .. .......++.|+.+.+.++...... ....++..+.+...
T Consensus 169 l~~n~~~~~~------~~~~~~~~l~~~~~~-~~--~~~~~~~l~~L~~l~l~~n~~~~~~-----~~~~~l~~~~~~~~ 234 (353)
T d1jl5a_ 169 ADNNSLKKLP------DLPLSLESIVAGNNI-LE--ELPELQNLPFLTTIYADNNLLKTLP-----DLPPSLEALNVRDN 234 (353)
T ss_dssp CCSSCCSSCC------CCCTTCCEEECCSSC-CS--SCCCCTTCTTCCEEECCSSCCSSCC-----SCCTTCCEEECCSS
T ss_pred cccccccccc------ccccccccccccccc-cc--ccccccccccccccccccccccccc-----cccccccccccccc
Confidence 7765422110 111122333332221 10 1112345667777777776533211 12345555555542
Q ss_pred CCCCHHHHHHHHHhCCCCCeEe--------------------cCCCCCCCHHHHHHHHhcCCcCCeEEccCCCCCCHHHH
Q 012207 339 SGVTDEELSFVVQSHKELRKLD--------------------ITCCRKITYASINSITKTCTSLTSLRMECCKLVSWEAF 398 (468)
Q Consensus 339 ~~~~~~~l~~~~~~~~~L~~L~--------------------l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~ 398 (468)
. +... ....+.+.... +..+. +. .+...+++|++|++++|. ++.
T Consensus 235 ~-~~~~-----~~~~~~l~~~~~~~~~~~~l~~l~~~~~~~~~~~~~-~~-----~~~~~~~~L~~L~Ls~N~-l~~--- 298 (353)
T d1jl5a_ 235 Y-LTDL-----PELPQSLTFLDVSENIFSGLSELPPNLYYLNASSNE-IR-----SLCDLPPSLEELNVSNNK-LIE--- 298 (353)
T ss_dssp C-CSCC-----CCCCTTCCEEECCSSCCSEESCCCTTCCEEECCSSC-CS-----EECCCCTTCCEEECCSSC-CSC---
T ss_pred c-cccc-----ccccccccccccccccccccccccchhcccccccCc-cc-----cccccCCCCCEEECCCCc-cCc---
Confidence 1 1110 00112222222 22211 11 111235788888888864 332
Q ss_pred HHHHhcCCCCCEEEccCCCCChhhHHhcccCCCCCEEeeCCCCccCHHHHHHHHhcCcccCeeecC
Q 012207 399 VLIGQQCQYLEELDITENEVNDEGLKSISRCSKLSSLKLGICSNITDEGLKHVGSTCSMLKELDLY 464 (468)
Q Consensus 399 ~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~~L~~L~l~ 464 (468)
+...+++|+.|++++|.+++.. ..+++|+.|++++| .++. ++ ...++|+.|.+.
T Consensus 299 --lp~~~~~L~~L~L~~N~L~~l~----~~~~~L~~L~L~~N-~L~~--lp---~~~~~L~~L~~~ 352 (353)
T d1jl5a_ 299 --LPALPPRLERLIASFNHLAEVP----ELPQNLKQLHVEYN-PLRE--FP---DIPESVEDLRMN 352 (353)
T ss_dssp --CCCCCTTCCEEECCSSCCSCCC----CCCTTCCEEECCSS-CCSS--CC---CCCTTCCEEECC
T ss_pred --cccccCCCCEEECCCCcCCccc----cccCCCCEEECcCC-cCCC--CC---ccccccCeeECc
Confidence 1224678888888888776532 12457888888888 5663 22 223367777654
|
| >d1pgva_ c.10.1.1 (A:) Tropomodulin C-terminal domain {nematode (Caenorhabditis elegans) [TaxId: 6239]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: RNI-like family: 28-residue LRR domain: Tropomodulin C-terminal domain species: nematode (Caenorhabditis elegans) [TaxId: 6239]
Probab=98.92 E-value=1.9e-08 Score=77.94 Aligned_cols=121 Identities=16% Similarity=0.243 Sum_probs=86.9
Q ss_pred hHHHHHHHhCCCCCeEecccCCCCCHHHHHHHHH---hCCCCCeEecCCCCCCCHHHHHHHH---hcCCcCCeEEccCCC
Q 012207 318 SGIKAIGNWHGSLKELSLSKCSGVTDEELSFVVQ---SHKELRKLDITCCRKITYASINSIT---KTCTSLTSLRMECCK 391 (468)
Q Consensus 318 ~~~~~l~~~~~~L~~L~l~~~~~~~~~~l~~~~~---~~~~L~~L~l~~~~~~~~~~~~~~~---~~~~~L~~L~l~~~~ 391 (468)
+.+..+....++|++|+|+++..++++++..++. ..++|++|++++|. +++.+...++ ...+.|++|++++|
T Consensus 5 ~~l~~l~~n~~~L~~L~L~~~~~i~~~~~~~l~~~L~~n~~L~~L~Ls~n~-l~~~~~~~la~~L~~n~~L~~L~L~~n- 82 (167)
T d1pgva_ 5 SCINRLREDDTDLKEVNINNMKRVSKERIRSLIEAACNSKHIEKFSLANTA-ISDSEARGLIELIETSPSLRVLNVESN- 82 (167)
T ss_dssp HHHHHHHTTCSSCCEEECTTCCSSCHHHHHHHHHHHTTCSCCCEEECTTSC-CBHHHHTTHHHHHHHCSSCCEEECCSS-
T ss_pred HHHHHHHhCCCCCcEEEeCCCCCCCHHHHHHHHHHHhhCCccceeeccccc-cchhHHHHHhhhhhhcccccceeeehh-
Confidence 4566666677899999998766788887766544 44779999999876 7776654433 35788999999886
Q ss_pred CCCHHHHHHHHh---cCCCCCEEEccCCC---CChhhHHhc----ccCCCCCEEeeCCC
Q 012207 392 LVSWEAFVLIGQ---QCQYLEELDITENE---VNDEGLKSI----SRCSKLSSLKLGIC 440 (468)
Q Consensus 392 ~~~~~~~~~~~~---~~~~L~~L~l~~~~---~~~~~~~~l----~~~~~L~~L~l~~~ 440 (468)
.+++.++..+++ ..+.|++|++++|. +++.+...+ ...++|+.|+++.+
T Consensus 83 ~i~~~g~~~l~~aL~~n~sL~~L~l~~n~~~~~g~~~~~~l~~~L~~n~sL~~l~l~~~ 141 (167)
T d1pgva_ 83 FLTPELLARLLRSTLVTQSIVEFKADNQRQSVLGNQVEMDMMMAIEENESLLRVGISFA 141 (167)
T ss_dssp BCCHHHHHHHHHHTTTTCCCSEEECCCCSSCCCCHHHHHHHHHHHHHCSSCCEEECCCC
T ss_pred hcchHHHHHHHHHHHhCCcCCEEECCCCcCCCccHHHHHHHHHHHHhCCCccEeeCcCC
Confidence 488888776654 34669999998763 444444443 35788888888776
|
| >d1io0a_ c.10.1.1 (A:) Tropomodulin C-terminal domain {Chicken (Gallus gallus) [TaxId: 9031]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: RNI-like family: 28-residue LRR domain: Tropomodulin C-terminal domain species: Chicken (Gallus gallus) [TaxId: 9031]
Probab=98.89 E-value=4.3e-08 Score=75.98 Aligned_cols=121 Identities=18% Similarity=0.205 Sum_probs=83.5
Q ss_pred hHHHHHHHhCCCCCeEecccCCCCCHHHHHHHHH---hCCCCCeEecCCCCCCCHHHHHHHH---hcCCcCCeEEccCCC
Q 012207 318 SGIKAIGNWHGSLKELSLSKCSGVTDEELSFVVQ---SHKELRKLDITCCRKITYASINSIT---KTCTSLTSLRMECCK 391 (468)
Q Consensus 318 ~~~~~l~~~~~~L~~L~l~~~~~~~~~~l~~~~~---~~~~L~~L~l~~~~~~~~~~~~~~~---~~~~~L~~L~l~~~~ 391 (468)
+.+..+....++|++|+++++..+++.++..+.. ..++|++|++++|. +++.+...++ ...+.++.+++++|.
T Consensus 7 ~~l~~~~~~~~~L~~L~L~~~~~i~~~~~~~l~~al~~n~~L~~L~Ls~n~-l~~~~~~~L~~~l~~~~~l~~l~l~~~~ 85 (166)
T d1io0a_ 7 ETLKRIQNNDPDLEEVNLNNIMNIPVPTLKACAEALKTNTYVKKFSIVGTR-SNDPVAFALAEMLKVNNTLKSLNVESNF 85 (166)
T ss_dssp HHHHHHHTTCTTCCEEECTTCTTCCHHHHHHHHHHHTTCCSCCEEECTTSC-CCHHHHHHHHHHHHHCSSCCEEECCSSC
T ss_pred HHHHHHHhcCCCCcEEEcCCCCCCCHHHHHHHHHHHhcCCccCeeeccCCc-ccHHHHHHHHHHHhhcccchhhhhcccc
Confidence 4455565567888888888766788877666554 45788888888874 7777655443 346788888887754
Q ss_pred CCCHHHHHHHHh---cCCCCCEEEcc--CCCCChhhHHhcc----cCCCCCEEeeCCC
Q 012207 392 LVSWEAFVLIGQ---QCQYLEELDIT--ENEVNDEGLKSIS----RCSKLSSLKLGIC 440 (468)
Q Consensus 392 ~~~~~~~~~~~~---~~~~L~~L~l~--~~~~~~~~~~~l~----~~~~L~~L~l~~~ 440 (468)
+++.++..+.+ ..++|+.++|. .|.+++.+...++ .+++|+.|+++.+
T Consensus 86 -~~~~g~~~l~~~l~~~~~L~~l~L~l~~n~i~~~~~~~La~~L~~n~~L~~L~l~~~ 142 (166)
T d1io0a_ 86 -ISGSGILALVEALQSNTSLIELRIDNQSQPLGNNVEMEIANMLEKNTTLLKFGYHFT 142 (166)
T ss_dssp -CCHHHHHHHHHGGGGCSSCCEEECCCCSSCCCHHHHHHHHHHHHHCSSCCEEECCCS
T ss_pred -ccchhHHHHHHHHHhCccccEEeeccCCCcCcHHHHHHHHHHHHhCCCcCEEeCcCC
Confidence 67777665553 45677776664 4577776655554 5778888888766
|
| >d1xwdc1 c.10.2.7 (C:18-259) Follicle-stimulating hormone receptor {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: L domain-like family: Ngr ectodomain-like domain: Follicle-stimulating hormone receptor species: Human (Homo sapiens) [TaxId: 9606]
Probab=98.83 E-value=9.7e-12 Score=104.38 Aligned_cols=40 Identities=13% Similarity=0.128 Sum_probs=20.7
Q ss_pred CCccceEeecCCCCCchhHHHHhhcCCCCCeeEecCCcCC
Q 012207 277 ADYLQQLILAYSFWVSADLSKCLHNFPMLQSIKFEDCPVA 316 (468)
Q Consensus 277 ~~~L~~L~l~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~ 316 (468)
++.++++.+..+..+.......+..+++|+++.+.++.+.
T Consensus 77 l~~l~~l~~~~~n~l~~~~~~~~~~l~~L~~l~l~~~~l~ 116 (242)
T d1xwdc1 77 LPKLHEIRIEKANNLLYINPEAFQNLPNLQYLLISNTGIK 116 (242)
T ss_dssp CTTCCEEEEECCTTCCEECTTSEECCTTCCEEEEESCCCC
T ss_pred ccccccccccccccccccccccccccccccccccchhhhc
Confidence 3444444444333333333344556667777777666554
|
| >d1nexb1 a.158.1.1 (B:270-369) Cdc4 F-box and linker domains {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: F-box domain superfamily: F-box domain family: F-box domain domain: Cdc4 F-box and linker domains species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=98.82 E-value=5.4e-10 Score=78.15 Aligned_cols=45 Identities=13% Similarity=0.042 Sum_probs=39.4
Q ss_pred CCCcccCcHHHHHHHHhhhcCChhhhhHHhhhhhhHHHHHHhhhhhc
Q 012207 9 SNPFDFLSEEIIFNILDHLNNDPFARKSFSLTCRNFYSIESRHRKIL 55 (468)
Q Consensus 9 ~~~~~~LP~eil~~I~~~~l~~~~~~~~~~~v~~~w~~~~~~~~~~~ 55 (468)
.|+++.||+||+.+||+ ||+ ..|++++++|||+|++++......|
T Consensus 3 ~D~~~~LP~Ell~~I~s-~Ld-~~dL~~~s~Vcr~W~~~~~~d~~LW 47 (100)
T d1nexb1 3 RDLITSLPFEISLKIFN-YLQ-FEDIINSLGVSQNWNKIIRKSTSLW 47 (100)
T ss_dssp CCHHHHSCHHHHHHHHT-TSC-HHHHHHHTTTCHHHHHHHHTCSHHH
T ss_pred CCchhhCCHHHHHHHHH-CCC-HHHHHHHHHHHHHHHHHHHCCHHHH
Confidence 57899999999999999 996 9999999999999999886544333
|
| >d1jl5a_ c.10.2.6 (A:) Leucine rich effector protein YopM {Yersinia pestis [TaxId: 632]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: L domain-like family: Leucine rich effector protein YopM domain: Leucine rich effector protein YopM species: Yersinia pestis [TaxId: 632]
Probab=98.82 E-value=2.7e-09 Score=94.67 Aligned_cols=299 Identities=13% Similarity=0.099 Sum_probs=153.4
Q ss_pred CCCcEEecCCCCCCChhHHHhhhcccccCCccEEecCCCCcccHHHHHHhhhcCCCCcEEEccCCCccCHHHHHHHHcC-
Q 012207 71 PFITQLDLSLCPRANDDALSIVSSSSWKLTLRSINLSRSRLFTKVGLSSLTVNCRFLTEIDLSNGTEMGDAAAAAIAEA- 149 (468)
Q Consensus 71 ~~l~~l~l~~~~~~~~~~~~~l~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~l~~~- 149 (468)
.+++.|+++++. ++. + ....++|++|+++++. ++ .+.....+|++|++.++. +.. +..+
T Consensus 38 ~~l~~LdLs~~~-L~~-----l--p~~~~~L~~L~Ls~N~-l~-----~lp~~~~~L~~L~l~~n~-l~~-----l~~lp 97 (353)
T d1jl5a_ 38 RQAHELELNNLG-LSS-----L--PELPPHLESLVASCNS-LT-----ELPELPQSLKSLLVDNNN-LKA-----LSDLP 97 (353)
T ss_dssp HTCSEEECTTSC-CSC-----C--CSCCTTCSEEECCSSC-CS-----SCCCCCTTCCEEECCSSC-CSC-----CCSCC
T ss_pred cCCCEEEeCCCC-CCC-----C--CCCCCCCCEEECCCCC-Cc-----ccccchhhhhhhhhhhcc-cch-----hhhhc
Confidence 368889998763 321 3 1235789999998754 33 122345789999998773 332 2233
Q ss_pred CCCCeEeccCCcccChHhHHHHHhcCCCCcEEeccCCCCCChHHHHHHHhhCCCccEeeecccCCCCCCccccccCCCCC
Q 012207 150 KNLERLWLARCKLITDLGIGRIAACCRKLKLLCLKWCIRVTDLGVELVALKCQEIRTLDLSYLPITEKCLPPVVKLQYLE 229 (468)
Q Consensus 150 ~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~ 229 (468)
+.|++|+++++. +.... .+ ..+++|+.|++.++.. .... ...+.+..+.+..+... ....+..++.++
T Consensus 98 ~~L~~L~L~~n~-l~~lp--~~-~~l~~L~~L~l~~~~~-~~~~-----~~~~~l~~l~~~~~~~~--~~~~l~~l~~l~ 165 (353)
T d1jl5a_ 98 PLLEYLGVSNNQ-LEKLP--EL-QNSSFLKIIDVDNNSL-KKLP-----DLPPSLEFIAAGNNQLE--ELPELQNLPFLT 165 (353)
T ss_dssp TTCCEEECCSSC-CSSCC--CC-TTCTTCCEEECCSSCC-SCCC-----CCCTTCCEEECCSSCCS--SCCCCTTCTTCC
T ss_pred cccccccccccc-ccccc--ch-hhhccceeeccccccc-cccc-----cccccccchhhcccccc--ccccccccccce
Confidence 469999998865 33221 12 2378999999987643 2111 13456677776655332 233445567777
Q ss_pred eeeecCCCCCChHHHHHHHhcCCCCCEEEccCCcccChhhHHHHHhcCCccceEeecCCCCCchhHHHHhhcCCCCCeeE
Q 012207 230 DLVLEGCHGIDDDGLASVEYSCKSLKALNLSKCQNISHVGLSSLIKGADYLQQLILAYSFWVSADLSKCLHNFPMLQSIK 309 (468)
Q Consensus 230 ~L~l~~~~~~~~~~~~~l~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~L~~L~ 309 (468)
.+.+.++...... ......+.+...+....... ....++.|+.+.++++.... . .....++..+.
T Consensus 166 ~L~l~~n~~~~~~------~~~~~~~~l~~~~~~~~~~~----~~~~l~~L~~l~l~~n~~~~--~---~~~~~~l~~~~ 230 (353)
T d1jl5a_ 166 AIYADNNSLKKLP------DLPLSLESIVAGNNILEELP----ELQNLPFLTTIYADNNLLKT--L---PDLPPSLEALN 230 (353)
T ss_dssp EEECCSSCCSSCC------CCCTTCCEEECCSSCCSSCC----CCTTCTTCCEEECCSSCCSS--C---CSCCTTCCEEE
T ss_pred ecccccccccccc------cccccccccccccccccccc----cccccccccccccccccccc--c---ccccccccccc
Confidence 7777663321100 00122233333322110000 01233455555554432111 0 01122334444
Q ss_pred ecCCcCChhHH---------------HHHHHhCCCCCeEecccCCCCCHHHHHHHHHhCCCCCeEecCCCCCCCHHHHHH
Q 012207 310 FEDCPVARSGI---------------KAIGNWHGSLKELSLSKCSGVTDEELSFVVQSHKELRKLDITCCRKITYASINS 374 (468)
Q Consensus 310 l~~~~~~~~~~---------------~~l~~~~~~L~~L~l~~~~~~~~~~l~~~~~~~~~L~~L~l~~~~~~~~~~~~~ 374 (468)
+..+.+..... ..+..........++..+ .+. .+...+++|++|++++|. ++.
T Consensus 231 ~~~~~~~~~~~~~~~l~~~~~~~~~~~~l~~l~~~~~~~~~~~~-~~~-----~~~~~~~~L~~L~Ls~N~-l~~----- 298 (353)
T d1jl5a_ 231 VRDNYLTDLPELPQSLTFLDVSENIFSGLSELPPNLYYLNASSN-EIR-----SLCDLPPSLEELNVSNNK-LIE----- 298 (353)
T ss_dssp CCSSCCSCCCCCCTTCCEEECCSSCCSEESCCCTTCCEEECCSS-CCS-----EECCCCTTCCEEECCSSC-CSC-----
T ss_pred cccccccccccccccccccccccccccccccccchhcccccccC-ccc-----cccccCCCCCEEECCCCc-cCc-----
Confidence 43333221000 000000112233333321 111 112245899999999986 432
Q ss_pred HHhcCCcCCeEEccCCCCCCHHHHHHHHhcCCCCCEEEccCCCCChhhHHhcccCCCCCEEeeC
Q 012207 375 ITKTCTSLTSLRMECCKLVSWEAFVLIGQQCQYLEELDITENEVNDEGLKSISRCSKLSSLKLG 438 (468)
Q Consensus 375 ~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~ 438 (468)
+...+++|+.|++++|. ++. +...+++|++|++++|.++..+ . -.++|+.|.+.
T Consensus 299 lp~~~~~L~~L~L~~N~-L~~-----l~~~~~~L~~L~L~~N~L~~lp-~---~~~~L~~L~~~ 352 (353)
T d1jl5a_ 299 LPALPPRLERLIASFNH-LAE-----VPELPQNLKQLHVEYNPLREFP-D---IPESVEDLRMN 352 (353)
T ss_dssp CCCCCTTCCEEECCSSC-CSC-----CCCCCTTCCEEECCSSCCSSCC-C---CCTTCCEEECC
T ss_pred cccccCCCCEEECCCCc-CCc-----cccccCCCCEEECcCCcCCCCC-c---cccccCeeECc
Confidence 12357999999999864 543 2234678999999999887632 1 12368888765
|
| >d1pgva_ c.10.1.1 (A:) Tropomodulin C-terminal domain {nematode (Caenorhabditis elegans) [TaxId: 6239]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: RNI-like family: 28-residue LRR domain: Tropomodulin C-terminal domain species: nematode (Caenorhabditis elegans) [TaxId: 6239]
Probab=98.82 E-value=4e-08 Score=76.01 Aligned_cols=114 Identities=12% Similarity=0.216 Sum_probs=57.9
Q ss_pred cCCCCCeeEecCC-cCChhHHHHHHH---hCCCCCeEecccCCCCCHHHHHH---HHHhCCCCCeEecCCCCCCCHHHHH
Q 012207 301 NFPMLQSIKFEDC-PVARSGIKAIGN---WHGSLKELSLSKCSGVTDEELSF---VVQSHKELRKLDITCCRKITYASIN 373 (468)
Q Consensus 301 ~~~~L~~L~l~~~-~~~~~~~~~l~~---~~~~L~~L~l~~~~~~~~~~l~~---~~~~~~~L~~L~l~~~~~~~~~~~~ 373 (468)
+.++|++|+|+++ .++++++..++. ..++|++|++++| .+++.+... .+...+.|++|++++|. +++.++.
T Consensus 13 n~~~L~~L~L~~~~~i~~~~~~~l~~~L~~n~~L~~L~Ls~n-~l~~~~~~~la~~L~~n~~L~~L~L~~n~-i~~~g~~ 90 (167)
T d1pgva_ 13 DDTDLKEVNINNMKRVSKERIRSLIEAACNSKHIEKFSLANT-AISDSEARGLIELIETSPSLRVLNVESNF-LTPELLA 90 (167)
T ss_dssp TCSSCCEEECTTCCSSCHHHHHHHHHHHTTCSCCCEEECTTS-CCBHHHHTTHHHHHHHCSSCCEEECCSSB-CCHHHHH
T ss_pred CCCCCcEEEeCCCCCCCHHHHHHHHHHHhhCCccceeecccc-ccchhHHHHHhhhhhhcccccceeeehhh-cchHHHH
Confidence 4466666666653 355555554443 2345666666653 455544332 23344566666666653 5555554
Q ss_pred HHHh---cCCcCCeEEccCCC--CCCHHHHHHHH---hcCCCCCEEEccCC
Q 012207 374 SITK---TCTSLTSLRMECCK--LVSWEAFVLIG---QQCQYLEELDITEN 416 (468)
Q Consensus 374 ~~~~---~~~~L~~L~l~~~~--~~~~~~~~~~~---~~~~~L~~L~l~~~ 416 (468)
.++. ..++|++|+++++. .+++.+...++ ...+.|+.|+++.+
T Consensus 91 ~l~~aL~~n~sL~~L~l~~n~~~~~g~~~~~~l~~~L~~n~sL~~l~l~~~ 141 (167)
T d1pgva_ 91 RLLRSTLVTQSIVEFKADNQRQSVLGNQVEMDMMMAIEENESLLRVGISFA 141 (167)
T ss_dssp HHHHHTTTTCCCSEEECCCCSSCCCCHHHHHHHHHHHHHCSSCCEEECCCC
T ss_pred HHHHHHHhCCcCCEEECCCCcCCCccHHHHHHHHHHHHhCCCccEeeCcCC
Confidence 4433 23556666665431 23443332222 24556666666544
|
| >d1a9na_ c.10.2.4 (A:) Splicesomal U2A' protein {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: L domain-like family: U2A'-like domain: Splicesomal U2A' protein species: Human (Homo sapiens) [TaxId: 9606]
Probab=98.79 E-value=4.5e-09 Score=80.99 Aligned_cols=38 Identities=13% Similarity=0.027 Sum_probs=18.9
Q ss_pred HhhcCCCCCeeEecCCcCChhH--HHHHHHhCCCCCeEec
Q 012207 298 CLHNFPMLQSIKFEDCPVARSG--IKAIGNWHGSLKELSL 335 (468)
Q Consensus 298 ~l~~~~~L~~L~l~~~~~~~~~--~~~l~~~~~~L~~L~l 335 (468)
.+..+++|++|++.+|+++... -..+...+|+|+.|+-
T Consensus 107 ~l~~l~~L~~L~l~~N~i~~~~~~r~~~i~~lp~L~~LD~ 146 (162)
T d1a9na_ 107 PLASLKSLTYLCILRNPVTNKKHYRLYVIYKVPQVRVLDF 146 (162)
T ss_dssp GGGGCTTCCEEECCSSGGGGSTTHHHHHHHHCTTCSEETT
T ss_pred ccccccccchhhcCCCccccccchHHHHHHHCCCcCeeCC
Confidence 3455666666666666554321 1112224556665553
|
| >d1dcea3 c.10.2.2 (A:444-567) Rab geranylgeranyltransferase alpha-subunit, C-terminal domain {Rat (Rattus norvegicus) [TaxId: 10116]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: L domain-like family: Rab geranylgeranyltransferase alpha-subunit, C-terminal domain domain: Rab geranylgeranyltransferase alpha-subunit, C-terminal domain species: Rat (Rattus norvegicus) [TaxId: 10116]
Probab=98.76 E-value=1.2e-08 Score=74.40 Aligned_cols=102 Identities=18% Similarity=0.163 Sum_probs=49.2
Q ss_pred EeeecccCCCCCCccccccCCCCCeeeecCCCCCChHHHHHHHhcCCCCCEEEccCCcccChhhHHHHHhcCCccceEee
Q 012207 206 TLDLSYLPITEKCLPPVVKLQYLEDLVLEGCHGIDDDGLASVEYSCKSLKALNLSKCQNISHVGLSSLIKGADYLQQLIL 285 (468)
Q Consensus 206 ~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l 285 (468)
.|+++++.++. +..+.++++|++|++++ +.+.... ..+.. +++|+.|+++++....-.+ +..+++|+.|++
T Consensus 2 ~L~Ls~n~l~~--l~~l~~l~~L~~L~ls~-N~l~~lp-~~~~~-l~~L~~L~l~~N~i~~l~~----~~~l~~L~~L~l 72 (124)
T d1dcea3 2 VLHLAHKDLTV--LCHLEQLLLVTHLDLSH-NRLRALP-PALAA-LRCLEVLQASDNALENVDG----VANLPRLQELLL 72 (124)
T ss_dssp EEECTTSCCSS--CCCGGGGTTCCEEECCS-SCCCCCC-GGGGG-CTTCCEEECCSSCCCCCGG----GTTCSSCCEEEC
T ss_pred EEEcCCCCCCC--CcccccCCCCCEEECCC-CccCcch-hhhhh-hhcccccccccccccccCc----cccccccCeEEC
Confidence 45666665542 23455566666666665 3333321 12333 5666666666554221111 234455555555
Q ss_pred cCCCCCchhHHHHhhcCCCCCeeEecCCcCC
Q 012207 286 AYSFWVSADLSKCLHNFPMLQSIKFEDCPVA 316 (468)
Q Consensus 286 ~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~ 316 (468)
+++....-.....+..+++|+.|++++|++.
T Consensus 73 ~~N~i~~~~~~~~l~~~~~L~~L~l~~N~i~ 103 (124)
T d1dcea3 73 CNNRLQQSAAIQPLVSCPRLVLLNLQGNSLC 103 (124)
T ss_dssp CSSCCCSSSTTGGGGGCTTCCEEECTTSGGG
T ss_pred CCCccCCCCCchhhcCCCCCCEEECCCCcCC
Confidence 5542221122234455666666666666554
|
| >d1dcea3 c.10.2.2 (A:444-567) Rab geranylgeranyltransferase alpha-subunit, C-terminal domain {Rat (Rattus norvegicus) [TaxId: 10116]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: L domain-like family: Rab geranylgeranyltransferase alpha-subunit, C-terminal domain domain: Rab geranylgeranyltransferase alpha-subunit, C-terminal domain species: Rat (Rattus norvegicus) [TaxId: 10116]
Probab=98.75 E-value=1.6e-09 Score=79.33 Aligned_cols=103 Identities=15% Similarity=0.202 Sum_probs=65.9
Q ss_pred HhCCCCCeEecCCCCCCCHHHHHHHHhcCCcCCeEEccCCCCCCHHHHHHHHhcCCCCCEEEccCCCCChhh-HHhcccC
Q 012207 351 QSHKELRKLDITCCRKITYASINSITKTCTSLTSLRMECCKLVSWEAFVLIGQQCQYLEELDITENEVNDEG-LKSISRC 429 (468)
Q Consensus 351 ~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~-~~~l~~~ 429 (468)
+.+++|++|++++|. ++.. ......+++|+.|+++++ .++.- ..+. .+++|++|++++|.+++.. +..+..+
T Consensus 17 ~~l~~L~~L~ls~N~-l~~l--p~~~~~l~~L~~L~l~~N-~i~~l--~~~~-~l~~L~~L~l~~N~i~~~~~~~~l~~~ 89 (124)
T d1dcea3 17 EQLLLVTHLDLSHNR-LRAL--PPALAALRCLEVLQASDN-ALENV--DGVA-NLPRLQELLLCNNRLQQSAAIQPLVSC 89 (124)
T ss_dssp GGGTTCCEEECCSSC-CCCC--CGGGGGCTTCCEEECCSS-CCCCC--GGGT-TCSSCCEEECCSSCCCSSSTTGGGGGC
T ss_pred ccCCCCCEEECCCCc-cCcc--hhhhhhhhcccccccccc-ccccc--Cccc-cccccCeEECCCCccCCCCCchhhcCC
Confidence 455666666666654 3321 111235677777777763 34431 2233 7888999999998887643 3567788
Q ss_pred CCCCEEeeCCCCccCHH-H-HHHHHhcCcccCee
Q 012207 430 SKLSSLKLGICSNITDE-G-LKHVGSTCSMLKEL 461 (468)
Q Consensus 430 ~~L~~L~l~~~~~l~~~-~-~~~~~~~~~~L~~L 461 (468)
++|+.|++++| .++.. + ...+...+|+|+.|
T Consensus 90 ~~L~~L~l~~N-~i~~~~~~~~~l~~~lp~L~~L 122 (124)
T d1dcea3 90 PRLVLLNLQGN-SLCQEEGIQERLAEMLPSVSSI 122 (124)
T ss_dssp TTCCEEECTTS-GGGGSSSCTTHHHHHCTTCSEE
T ss_pred CCCCEEECCCC-cCCcCccHHHHHHHHCcCcceE
Confidence 99999999998 66542 1 33556678888876
|
| >d1m9la_ c.10.3.1 (A:) Outer arm dynein light chain 1 {Green algae (Chlamydomonas reinhardtii) [TaxId: 3055]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: Outer arm dynein light chain 1 family: Outer arm dynein light chain 1 domain: Outer arm dynein light chain 1 species: Green algae (Chlamydomonas reinhardtii) [TaxId: 3055]
Probab=98.75 E-value=4.6e-10 Score=89.96 Aligned_cols=39 Identities=13% Similarity=0.214 Sum_probs=20.6
Q ss_pred HHhhcCCCCCeeEecCCcCChhHHHHHHHhCCCCCeEecccC
Q 012207 297 KCLHNFPMLQSIKFEDCPVARSGIKAIGNWHGSLKELSLSKC 338 (468)
Q Consensus 297 ~~l~~~~~L~~L~l~~~~~~~~~~~~l~~~~~~L~~L~l~~~ 338 (468)
..+..+++|++|+++++.+.+-. .+. .+++|++|+++++
T Consensus 42 ~sl~~L~~L~~L~Ls~n~I~~i~--~l~-~l~~L~~L~Ls~N 80 (198)
T d1m9la_ 42 ATLSTLKACKHLALSTNNIEKIS--SLS-GMENLRILSLGRN 80 (198)
T ss_dssp HHHHHTTTCCEEECSEEEESCCC--CHH-HHTTCCEEECCEE
T ss_pred hHHhcccccceeECcccCCCCcc--ccc-CCccccChhhccc
Confidence 44555666666666666554321 122 3456666666653
|
| >d1io0a_ c.10.1.1 (A:) Tropomodulin C-terminal domain {Chicken (Gallus gallus) [TaxId: 9031]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: RNI-like family: 28-residue LRR domain: Tropomodulin C-terminal domain species: Chicken (Gallus gallus) [TaxId: 9031]
Probab=98.74 E-value=2.6e-07 Score=71.39 Aligned_cols=115 Identities=17% Similarity=0.199 Sum_probs=61.1
Q ss_pred hcCCCCCeeEecCC-cCChhHHHHHHH---hCCCCCeEecccCCCCCHHHHHHH---HHhCCCCCeEecCCCCCCCHHHH
Q 012207 300 HNFPMLQSIKFEDC-PVARSGIKAIGN---WHGSLKELSLSKCSGVTDEELSFV---VQSHKELRKLDITCCRKITYASI 372 (468)
Q Consensus 300 ~~~~~L~~L~l~~~-~~~~~~~~~l~~---~~~~L~~L~l~~~~~~~~~~l~~~---~~~~~~L~~L~l~~~~~~~~~~~ 372 (468)
.+.++|++|++.++ .+++.++..++. ..++|++|++++| .+++.+...+ +...+.++.+++++|. +++.++
T Consensus 14 ~~~~~L~~L~L~~~~~i~~~~~~~l~~al~~n~~L~~L~Ls~n-~l~~~~~~~L~~~l~~~~~l~~l~l~~~~-~~~~g~ 91 (166)
T d1io0a_ 14 NNDPDLEEVNLNNIMNIPVPTLKACAEALKTNTYVKKFSIVGT-RSNDPVAFALAEMLKVNNTLKSLNVESNF-ISGSGI 91 (166)
T ss_dssp TTCTTCCEEECTTCTTCCHHHHHHHHHHHTTCCSCCEEECTTS-CCCHHHHHHHHHHHHHCSSCCEEECCSSC-CCHHHH
T ss_pred hcCCCCcEEEcCCCCCCCHHHHHHHHHHHhcCCccCeeeccCC-cccHHHHHHHHHHHhhcccchhhhhcccc-ccchhH
Confidence 35566666666653 466665555543 3456666666663 5555544432 3334566666666554 555555
Q ss_pred HHHHh---cCCcCCeEEccCC-CCCCHHHHHHHHh---cCCCCCEEEccCC
Q 012207 373 NSITK---TCTSLTSLRMECC-KLVSWEAFVLIGQ---QCQYLEELDITEN 416 (468)
Q Consensus 373 ~~~~~---~~~~L~~L~l~~~-~~~~~~~~~~~~~---~~~~L~~L~l~~~ 416 (468)
..++. ..++|+.++|+.+ +.+++.+...++. .+++|+.|+++.+
T Consensus 92 ~~l~~~l~~~~~L~~l~L~l~~n~i~~~~~~~La~~L~~n~~L~~L~l~~~ 142 (166)
T d1io0a_ 92 LALVEALQSNTSLIELRIDNQSQPLGNNVEMEIANMLEKNTTLLKFGYHFT 142 (166)
T ss_dssp HHHHHGGGGCSSCCEEECCCCSSCCCHHHHHHHHHHHHHCSSCCEEECCCS
T ss_pred HHHHHHHHhCccccEEeeccCCCcCcHHHHHHHHHHHHhCCCcCEEeCcCC
Confidence 44443 3455666555433 2455554443332 5566666666554
|
| >d2ovrb1 a.158.1.1 (B:2263-2364) F-box/WD repeat-containing protein 7, FBXW7 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: F-box domain superfamily: F-box domain family: F-box domain domain: F-box/WD repeat-containing protein 7, FBXW7 species: Human (Homo sapiens) [TaxId: 9606]
Probab=98.66 E-value=6.4e-09 Score=73.12 Aligned_cols=42 Identities=17% Similarity=0.283 Sum_probs=38.4
Q ss_pred cCCCCcccCcHHHHHHHHhhhcCChhhhhHHhhhhhhHHHHHHh
Q 012207 7 KNSNPFDFLSEEIIFNILDHLNNDPFARKSFSLTCRNFYSIESR 50 (468)
Q Consensus 7 ~~~~~~~~LP~eil~~I~~~~l~~~~~~~~~~~v~~~w~~~~~~ 50 (468)
-..|+++.||+||+.+||+ ||+ +.|+++++.|||+|++++.+
T Consensus 14 ~~~D~i~~LP~Eil~~Ils-~Ld-~~dL~~~~~vcr~w~~l~~~ 55 (102)
T d2ovrb1 14 FQRDFISLLPKELALYVLS-FLE-PKDLLQAAQTCRYWRILAED 55 (102)
T ss_dssp CCCSTTTSSCHHHHHHHHT-TSC-HHHHHHHTTSCHHHHHHHTC
T ss_pred hccCChhhCCHHHHHHHHH-cCC-HHHHHHHHHHHHHHHHHHCC
Confidence 3468999999999999999 996 99999999999999998754
|
| >d1w8aa_ c.10.2.7 (A:) Slit {Fruit fly (Drosophila melanogaster) [TaxId: 7227]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: L domain-like family: Ngr ectodomain-like domain: Slit species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]
Probab=98.64 E-value=8.2e-10 Score=88.38 Aligned_cols=111 Identities=14% Similarity=0.057 Sum_probs=77.4
Q ss_pred CCCCeEecccCCCCCHHHHHHHHHhCCCCCeEecCCCCCCCHHHHHHHHhcCCcCCeEEccCCCCCCHHHHHHHHhcCCC
Q 012207 328 GSLKELSLSKCSGVTDEELSFVVQSHKELRKLDITCCRKITYASINSITKTCTSLTSLRMECCKLVSWEAFVLIGQQCQY 407 (468)
Q Consensus 328 ~~L~~L~l~~~~~~~~~~l~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~ 407 (468)
+++++|+|+++ .++...-...+..+++|+.|+++++.. .... ...+..+++|++|+++++ .++.-....+ ..+++
T Consensus 29 ~~l~~L~Ls~N-~i~~~~~~~~f~~l~~L~~L~L~~N~i-~~~~-~~~~~~~~~L~~L~Ls~N-~l~~l~~~~F-~~l~~ 103 (192)
T d1w8aa_ 29 LHTTELLLNDN-ELGRISSDGLFGRLPHLVKLELKRNQL-TGIE-PNAFEGASHIQELQLGEN-KIKEISNKMF-LGLHQ 103 (192)
T ss_dssp TTCSEEECCSC-CCCSBCCSCSGGGCTTCCEEECCSSCC-CCBC-TTTTTTCTTCCEEECCSC-CCCEECSSSS-TTCTT
T ss_pred CCCCEEEeCCC-CCcccccccccCCCceEeeeecccccc-cccc-ccccccccccceeeeccc-cccccCHHHH-hCCCc
Confidence 68999999984 554211123356788999999988763 2221 122346789999999884 4553222223 37899
Q ss_pred CCEEEccCCCCChhhHHhcccCCCCCEEeeCCCCcc
Q 012207 408 LEELDITENEVNDEGLKSISRCSKLSSLKLGICSNI 443 (468)
Q Consensus 408 L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~l 443 (468)
|++|++++|.++......+..+++|++|++++|+-.
T Consensus 104 L~~L~L~~N~l~~i~~~~f~~l~~L~~l~L~~N~~~ 139 (192)
T d1w8aa_ 104 LKTLNLYDNQISCVMPGSFEHLNSLTSLNLASNPFN 139 (192)
T ss_dssp CCEEECCSSCCCEECTTSSTTCTTCCEEECTTCCBC
T ss_pred ccccccCCccccccCHHHhcCCcccccccccccccc
Confidence 999999999998877777888899999999988443
|
| >d1m9la_ c.10.3.1 (A:) Outer arm dynein light chain 1 {Green algae (Chlamydomonas reinhardtii) [TaxId: 3055]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: Outer arm dynein light chain 1 family: Outer arm dynein light chain 1 domain: Outer arm dynein light chain 1 species: Green algae (Chlamydomonas reinhardtii) [TaxId: 3055]
Probab=98.61 E-value=1.3e-09 Score=87.35 Aligned_cols=146 Identities=17% Similarity=0.192 Sum_probs=99.2
Q ss_pred CCCCeeEecCCc--CChhHHHHHHHhCCCCCeEecccCCCCCHHHHHHHHHhCCCCCeEecCCCCCCCHHHHHHHHhcCC
Q 012207 303 PMLQSIKFEDCP--VARSGIKAIGNWHGSLKELSLSKCSGVTDEELSFVVQSHKELRKLDITCCRKITYASINSITKTCT 380 (468)
Q Consensus 303 ~~L~~L~l~~~~--~~~~~~~~l~~~~~~L~~L~l~~~~~~~~~~l~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~ 380 (468)
..++.+.+.+.. +. .....+. .+++|++|+++++ .+++ +.. +..+++|+.|++++|. +++. ..+...++
T Consensus 23 ~~~~~~~l~~~~~~i~-~l~~sl~-~L~~L~~L~Ls~n-~I~~--i~~-l~~l~~L~~L~Ls~N~-i~~i--~~~~~~~~ 93 (198)
T d1m9la_ 23 TEAEKVELHGMIPPIE-KMDATLS-TLKACKHLALSTN-NIEK--ISS-LSGMENLRILSLGRNL-IKKI--ENLDAVAD 93 (198)
T ss_dssp TTCSCEECCBCCTTCC-CCHHHHH-HTTTCCEEECSEE-EESC--CCC-HHHHTTCCEEECCEEE-ECSC--SSHHHHHH
T ss_pred cccceeeeecccCchh-hhhhHHh-cccccceeECccc-CCCC--ccc-ccCCccccChhhcccc-cccc--cccccccc
Confidence 356666666542 22 1112333 6799999999985 4543 222 5578999999999885 4432 12223357
Q ss_pred cCCeEEccCCCCCCHHHHHHHHhcCCCCCEEEccCCCCChhh-HHhcccCCCCCEEeeCCCCccCHHH---------HHH
Q 012207 381 SLTSLRMECCKLVSWEAFVLIGQQCQYLEELDITENEVNDEG-LKSISRCSKLSSLKLGICSNITDEG---------LKH 450 (468)
Q Consensus 381 ~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~-~~~l~~~~~L~~L~l~~~~~l~~~~---------~~~ 450 (468)
+|+.|+++++. ++. +..+. .+++|+.|++++|.+++.. +..+..+++|+.|++++| .+.... ...
T Consensus 94 ~L~~L~l~~N~-i~~--l~~~~-~l~~L~~L~L~~N~i~~~~~~~~l~~l~~L~~L~L~~N-~l~~~~~~~~~~~~~r~~ 168 (198)
T d1m9la_ 94 TLEELWISYNQ-IAS--LSGIE-KLVNLRVLYMSNNKITNWGEIDKLAALDKLEDLLLAGN-PLYNDYKENNATSEYRIE 168 (198)
T ss_dssp HCCEEECSEEE-CCC--HHHHH-HHHHSSEEEESEEECCCHHHHHHHTTTTTCSEEEECSS-HHHHHHCTTTTHHHHHHH
T ss_pred ccccccccccc-ccc--ccccc-ccccccccccccchhccccccccccCCCccceeecCCC-ccccCcccccchhhHHHH
Confidence 89999999854 654 23344 6789999999999998754 467889999999999999 554321 122
Q ss_pred HHhcCcccCeee
Q 012207 451 VGSTCSMLKELD 462 (468)
Q Consensus 451 ~~~~~~~L~~L~ 462 (468)
+...+|+|+.|+
T Consensus 169 vi~~lp~L~~LD 180 (198)
T d1m9la_ 169 VVKRLPNLKKLD 180 (198)
T ss_dssp HHHHCSSCCEES
T ss_pred HHHHCCCcCEeC
Confidence 356899999986
|
| >d1xwdc1 c.10.2.7 (C:18-259) Follicle-stimulating hormone receptor {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: L domain-like family: Ngr ectodomain-like domain: Follicle-stimulating hormone receptor species: Human (Homo sapiens) [TaxId: 9606]
Probab=98.55 E-value=2.9e-10 Score=95.13 Aligned_cols=16 Identities=19% Similarity=0.152 Sum_probs=10.4
Q ss_pred hCCCccEeeecccCCC
Q 012207 200 KCQEIRTLDLSYLPIT 215 (468)
Q Consensus 200 ~~~~L~~L~l~~~~~~ 215 (468)
.+++|+++++.++.+.
T Consensus 101 ~l~~L~~l~l~~~~l~ 116 (242)
T d1xwdc1 101 NLPNLQYLLISNTGIK 116 (242)
T ss_dssp CCTTCCEEEEESCCCC
T ss_pred ccccccccccchhhhc
Confidence 5667777777666554
|
| >d1p22a1 a.158.1.1 (A:135-252) F-box/WD-repeat protein 1 (beta-TRCP1) {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: F-box domain superfamily: F-box domain family: F-box domain domain: F-box/WD-repeat protein 1 (beta-TRCP1) species: Human (Homo sapiens) [TaxId: 9606]
Probab=98.34 E-value=1.1e-07 Score=68.41 Aligned_cols=42 Identities=21% Similarity=0.333 Sum_probs=37.3
Q ss_pred CCCCcccCc----HHHHHHHHhhhcCChhhhhHHhhhhhhHHHHHHhh
Q 012207 8 NSNPFDFLS----EEIIFNILDHLNNDPFARKSFSLTCRNFYSIESRH 51 (468)
Q Consensus 8 ~~~~~~~LP----~eil~~I~~~~l~~~~~~~~~~~v~~~w~~~~~~~ 51 (468)
..|++..|| |||+.+||+ ||+ ..|+.++++|||+|++++.+.
T Consensus 7 ~~D~i~~LP~~l~~EI~~~Ils-~Ld-~~dL~~~s~Vck~W~~l~~d~ 52 (118)
T d1p22a1 7 QRDFITALPARGLDHIAENILS-YLD-AKSLCAAELVCKEWYRVTSDG 52 (118)
T ss_dssp CCCHHHHTGGGTCHHHHHHHHT-TCC-HHHHHHHHHHCHHHHHHHHHT
T ss_pred cccHHHHCCCCChHHHHHHHHH-cCC-HHHHHHHHHHHHHHHHHHcCH
Confidence 357888999 599999999 996 999999999999999998653
|
| >d1w8aa_ c.10.2.7 (A:) Slit {Fruit fly (Drosophila melanogaster) [TaxId: 7227]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: L domain-like family: Ngr ectodomain-like domain: Slit species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]
Probab=98.33 E-value=2.6e-08 Score=79.40 Aligned_cols=111 Identities=14% Similarity=0.094 Sum_probs=75.9
Q ss_pred CCCCeeEecCCcCChhHHHHHHHhCCCCCeEecccCCCCCHHHHHHHHHhCCCCCeEecCCCCCCCHHHHHHHHhcCCcC
Q 012207 303 PMLQSIKFEDCPVARSGIKAIGNWHGSLKELSLSKCSGVTDEELSFVVQSHKELRKLDITCCRKITYASINSITKTCTSL 382 (468)
Q Consensus 303 ~~L~~L~l~~~~~~~~~~~~l~~~~~~L~~L~l~~~~~~~~~~l~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L 382 (468)
+++++|++++|.++..........+++|++|+++++ .+... ....+..+++|++|++++|. ++..... .+.++++|
T Consensus 29 ~~l~~L~Ls~N~i~~~~~~~~f~~l~~L~~L~L~~N-~i~~~-~~~~~~~~~~L~~L~Ls~N~-l~~l~~~-~F~~l~~L 104 (192)
T d1w8aa_ 29 LHTTELLLNDNELGRISSDGLFGRLPHLVKLELKRN-QLTGI-EPNAFEGASHIQELQLGENK-IKEISNK-MFLGLHQL 104 (192)
T ss_dssp TTCSEEECCSCCCCSBCCSCSGGGCTTCCEEECCSS-CCCCB-CTTTTTTCTTCCEEECCSCC-CCEECSS-SSTTCTTC
T ss_pred CCCCEEEeCCCCCcccccccccCCCceEeeeecccc-ccccc-cccccccccccceeeecccc-ccccCHH-HHhCCCcc
Confidence 589999999998865332333336789999999884 44322 12335567899999999886 4432221 23478999
Q ss_pred CeEEccCCCCCCHHHHHHHHhcCCCCCEEEccCCCCC
Q 012207 383 TSLRMECCKLVSWEAFVLIGQQCQYLEELDITENEVN 419 (468)
Q Consensus 383 ~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~ 419 (468)
++|+++++ .++.-....+. .+++|++|++++|.+.
T Consensus 105 ~~L~L~~N-~l~~i~~~~f~-~l~~L~~l~L~~N~~~ 139 (192)
T d1w8aa_ 105 KTLNLYDN-QISCVMPGSFE-HLNSLTSLNLASNPFN 139 (192)
T ss_dssp CEEECCSS-CCCEECTTSST-TCTTCCEEECTTCCBC
T ss_pred cccccCCc-cccccCHHHhc-CCcccccccccccccc
Confidence 99999984 45543222233 7899999999998665
|
| >d2ifga3 c.10.2.7 (A:36-191) High affinity nerve growth factor receptor, N-terminal domain {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: L domain-like family: Ngr ectodomain-like domain: High affinity nerve growth factor receptor, N-terminal domain species: Human (Homo sapiens) [TaxId: 9606]
Probab=98.20 E-value=2e-07 Score=71.01 Aligned_cols=87 Identities=15% Similarity=0.114 Sum_probs=53.4
Q ss_pred HhCCCCCeEecCCCCCCCHHHHHHHHhcCCcCCeEEccCCCCCCHHHHHHHHhcCCCCCEEEccCCCCChhhHHhcccCC
Q 012207 351 QSHKELRKLDITCCRKITYASINSITKTCTSLTSLRMECCKLVSWEAFVLIGQQCQYLEELDITENEVNDEGLKSISRCS 430 (468)
Q Consensus 351 ~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~ 430 (468)
..+++|++|++.++..++...... +..+++|+.|+++++ .++......+. .+++|++|++++|.++......+. ..
T Consensus 28 ~~l~~l~~L~l~~n~~l~~i~~~~-f~~l~~L~~L~Ls~N-~l~~i~~~~f~-~l~~L~~L~Ls~N~l~~l~~~~~~-~~ 103 (156)
T d2ifga3 28 PGAENLTELYIENQQHLQHLELRD-LRGLGELRNLTIVKS-GLRFVAPDAFH-FTPRLSRLNLSFNALESLSWKTVQ-GL 103 (156)
T ss_dssp CSCSCCSEEECCSCSSCCEECGGG-SCSCCCCSEEECCSS-CCCEECTTGGG-SCSCCCEEECCSSCCSCCCSTTTC-SC
T ss_pred cCccccCeeecCCCccccccCchh-hccccccCcceeecc-ccCCccccccc-ccccccceeccCCCCcccChhhhc-cc
Confidence 355788888887655454332222 235778888888774 35433222333 677888888888877765433333 44
Q ss_pred CCCEEeeCCCC
Q 012207 431 KLSSLKLGICS 441 (468)
Q Consensus 431 ~L~~L~l~~~~ 441 (468)
+|+.|+|++|+
T Consensus 104 ~l~~L~L~~Np 114 (156)
T d2ifga3 104 SLQELVLSGNP 114 (156)
T ss_dssp CCCEEECCSSC
T ss_pred cccccccCCCc
Confidence 68888888773
|
| >d1koha1 c.10.2.3 (A:201-362) mRNA export factor tap {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: L domain-like family: mRNA export factor tap domain: mRNA export factor tap species: Human (Homo sapiens) [TaxId: 9606]
Probab=98.00 E-value=2.9e-06 Score=64.88 Aligned_cols=84 Identities=21% Similarity=0.224 Sum_probs=50.4
Q ss_pred hcCCcCCeEEccCCCCCCH-HHHHHHHhcCCCCCEEEccCCCCChhhHHhcccCCCCCEEeeCCCCccCH------HHHH
Q 012207 377 KTCTSLTSLRMECCKLVSW-EAFVLIGQQCQYLEELDITENEVNDEGLKSISRCSKLSSLKLGICSNITD------EGLK 449 (468)
Q Consensus 377 ~~~~~L~~L~l~~~~~~~~-~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~l~~------~~~~ 449 (468)
..+++|++|+++++. ++. .++......+++|+.|++++|.+++.......+..+|+.|++.+| .++. ....
T Consensus 62 ~~~~~L~~L~Ls~N~-i~~l~~~~~~~~~l~~L~~L~Ls~N~i~~l~~l~~l~~~~L~~L~L~~N-pl~~~~~~~~~y~~ 139 (162)
T d1koha1 62 ENIPELLSLNLSNNR-LYRLDDMSSIVQKAPNLKILNLSGNELKSERELDKIKGLKLEELWLDGN-SLSDTFRDQSTYIS 139 (162)
T ss_dssp HHCTTCCCCCCCSSC-CCCCSGGGTHHHHSTTCCCCCCTTSCCCCGGGHHHHTTCCCSSCCCTTS-TTSSSSSSHHHHHH
T ss_pred HhCCCCCEeeCCCcc-ccCCchhHHHHhhCCcccccccccCccccchhhhhhhccccceeecCCC-CcCcCcccchhHHH
Confidence 356666666666633 432 222233336788888888888777643323234556888888887 4431 2344
Q ss_pred HHHhcCcccCeee
Q 012207 450 HVGSTCSMLKELD 462 (468)
Q Consensus 450 ~~~~~~~~L~~L~ 462 (468)
.+.+.+|+|+.|+
T Consensus 140 ~i~~~~P~L~~LD 152 (162)
T d1koha1 140 AIRERFPKLLRLD 152 (162)
T ss_dssp HHHTTSTTCCEET
T ss_pred HHHHHCCCCCEEC
Confidence 5666788888775
|
| >d2ifga3 c.10.2.7 (A:36-191) High affinity nerve growth factor receptor, N-terminal domain {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: L domain-like family: Ngr ectodomain-like domain: High affinity nerve growth factor receptor, N-terminal domain species: Human (Homo sapiens) [TaxId: 9606]
Probab=97.75 E-value=2.1e-06 Score=65.07 Aligned_cols=86 Identities=19% Similarity=0.179 Sum_probs=36.1
Q ss_pred CCCCCeEecccCCCCCHHHHHHHHHhCCCCCeEecCCCCCCCHHHHHHHHhcCCcCCeEEccCCCCCCHHHHHHHHhcCC
Q 012207 327 HGSLKELSLSKCSGVTDEELSFVVQSHKELRKLDITCCRKITYASINSITKTCTSLTSLRMECCKLVSWEAFVLIGQQCQ 406 (468)
Q Consensus 327 ~~~L~~L~l~~~~~~~~~~l~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~ 406 (468)
+++|++|++++.+.++... ...+.++++|+.|++++|. ++..... .+..+++|++|+++++. ++.-.... . ...
T Consensus 30 l~~l~~L~l~~n~~l~~i~-~~~f~~l~~L~~L~Ls~N~-l~~i~~~-~f~~l~~L~~L~Ls~N~-l~~l~~~~-~-~~~ 103 (156)
T d2ifga3 30 AENLTELYIENQQHLQHLE-LRDLRGLGELRNLTIVKSG-LRFVAPD-AFHFTPRLSRLNLSFNA-LESLSWKT-V-QGL 103 (156)
T ss_dssp CSCCSEEECCSCSSCCEEC-GGGSCSCCCCSEEECCSSC-CCEECTT-GGGSCSCCCEEECCSSC-CSCCCSTT-T-CSC
T ss_pred ccccCeeecCCCccccccC-chhhccccccCcceeeccc-cCCcccc-cccccccccceeccCCC-CcccChhh-h-ccc
Confidence 3455566555433333211 1113345556666665553 3322111 12345566666665522 32111111 1 223
Q ss_pred CCCEEEccCCCC
Q 012207 407 YLEELDITENEV 418 (468)
Q Consensus 407 ~L~~L~l~~~~~ 418 (468)
+|+.|++++|.+
T Consensus 104 ~l~~L~L~~Np~ 115 (156)
T d2ifga3 104 SLQELVLSGNPL 115 (156)
T ss_dssp CCCEEECCSSCC
T ss_pred cccccccCCCcc
Confidence 455666655544
|
| >d1koha1 c.10.2.3 (A:201-362) mRNA export factor tap {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: L domain-like family: mRNA export factor tap domain: mRNA export factor tap species: Human (Homo sapiens) [TaxId: 9606]
Probab=97.52 E-value=2e-05 Score=60.05 Aligned_cols=39 Identities=23% Similarity=0.226 Sum_probs=17.0
Q ss_pred hCCCCCeEecccCCCCCHH-HHHHHHHhCCCCCeEecCCCC
Q 012207 326 WHGSLKELSLSKCSGVTDE-ELSFVVQSHKELRKLDITCCR 365 (468)
Q Consensus 326 ~~~~L~~L~l~~~~~~~~~-~l~~~~~~~~~L~~L~l~~~~ 365 (468)
.+++|++|+++++ .+++. ++...+..+++|+.|++++|.
T Consensus 63 ~~~~L~~L~Ls~N-~i~~l~~~~~~~~~l~~L~~L~Ls~N~ 102 (162)
T d1koha1 63 NIPELLSLNLSNN-RLYRLDDMSSIVQKAPNLKILNLSGNE 102 (162)
T ss_dssp HCTTCCCCCCCSS-CCCCCSGGGTHHHHSTTCCCCCCTTSC
T ss_pred hCCCCCEeeCCCc-cccCCchhHHHHhhCCcccccccccCc
Confidence 4555555555552 23221 122233344555555555443
|