Citrus Sinensis ID: 012227

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350-------360-------370-------380-------390-------400-------410-------420-------430-------440-------450-------460-------47
Protein Sequence
MGELAMLRQLIGQLQQFLQLYGSFPPHNTDSCFLYFHSHQHQQLPEEQTHQLHRWCLPEVDDGAADDYYGFVMAAGKSGSCKMLEPVKPPPSKRSRKERNRGKLAGSTSTAEAMEQEIWKEFPEDLYEAVIARLPIATFFRFRSVCQKWNSLLKSHSFSQHCAQVPQGIPWFYTITHENVNSGAMYDPSLKKWHHPTISSLPTKMIILPVASAGGLVCFLDIGHRNFYVCNPLTQSFKELPARSVKVWSRVAVGMTLNGNSTSSGYKILWVGCDGEYEIYDSLRNSWTRPGSMPSNIKLPVSLNFRSQAVSVDGILYFMRSDPEGIVSYNMVTGVWKQFIIPTPLHLNDHTLAECGGRIMLVGLLTKNAATCVCIWELQKMTLLWKEVDRMPNIWCLDFYGKHVRMTCLGNKGLLMLSLRSRQMNRLVTYNVMSREWLKVPGCVVPRGRKRQWIACGTAFHPCLMATA
Secondary Structure (PSIPRED)
cHHHHHHHHHHHHHHHHHHHHccccccccccccEEEEcccccccccccccccccEEEccccccccccHHHHHHHcccccccccccccccccccccccccccccccccccccccccHHHHccccHHHHHHHHHcccHHHHHHHHcccHHHHHHHcccHHHHHHHcccccccEEEEEEcccccccEEEcccccccccccccccccccEEEEEcccccEEEEEEcccccEEEEccccccEEEcccccccccccEEEEEEEccccccccEEEEEEEEcccEEEEEccccEEEccccccccccccccccccccEEEEccEEEEEEccccccEEEEEEccEEEEEEEcccccccccEEEEEccEEEEEEEEEcccccEEEEEEEEccccEEEEEEEEccHHHHcccccccEEEEEEEccEEEEEEccccccEEEEEEccccEEEEcccccccccccccEEEEEEEEEccccccc
Secondary Structure Prediction (SSPRO)
ccHHHHHHHHHHHHHHHHHHHcccccccccccEEEEcccccccccHHHccccccEEEcccccccccccccHHEEcccccccccccccccccccccccccccccccccccccHHccHHHHHHccHHHHHHHHHHccHHHHHHHHHHHHHHHHHHccHHHHHHHHcccccccEEEEEEccccccEEEEccccccccccccccccccccEEEEEccccEEEEEcccccEEEEEccccHHHccccccccccccccEEEEEEEcccccccEEEEEEccccEEEEEccccccEEccccccccccccccccccccEEEEccEEEEEEccccEEEEEEcccccEEEEEccccccccccEEEEEccEEEEEEEEEcccccEEEEEEEcccccEEEEHHcccHHHHHHHHcccccEEEEEcccEEEEEEEcccccEEEEEEccccEEEEccccccccccccccEEEEEEccccccEcc
Coil and Loop (DISEMBL)
MGELAMLRQLIGQLQQFLQLygsfpphntdscflyfhshqhqqlpeeqthqlhrwclpevddgaadDYYGFVMAAgksgsckmlepvkpppskrsrkernrgklagstSTAEAMEQEIWKEFPEDLYEAVIARLPIATFFRFRSVCQKWNSllkshsfsqhcaqvpqgipWFYTIThenvnsgamydpslkkwhhptisslptkmiilpvasagglvcfldighrnfyvcnpltqsfkelparSVKVWSRVAVGMTlngnstssgyKILWVGCDGEYEIYDSLrnswtrpgsmpsniklpvslnfrsqavsvdgilyfmrsdpegivsYNMVTGVWkqfiiptplhlndhtlaeCGGRIMLVGLLTKNAATCVCIWELQKMTLLWKEvdrmpniwcldfygkhvrmtclgnkgLLMLSLRSRQMNRLVTYNVMSRewlkvpgcvvprgrkrqwiacgtafhpclmata
Flexible Loop (DISEMBL)
MGELAMLRQLIGQLQQFLQLYGSFPPHNTDSCFLYFHSHQHQQLPEEQTHQLHRWCLPEVDDGAADDYYGFVMAAgksgsckmlepvkpppskrsrkernrgklagststaeaMEQEIWKEFPEDLYEAVIARLPIATFFRFRSVCQKWNSLLKSHSFSQHCAQVPQGIPWFYTITHENVNSGAMYDPSLKKWHHPTISSLPTKMIILPVASAGGLVCFLDIGHRNFYVCNPLTQSFKELPARSVKVWSRVAVGmtlngnstssgyKILWVGCDGEYEIYDSLRNSWTRPGSMPSNIKLPVSLNFRSQAVSVDGILYFMRSDPEGIVSYNMVTGVWKQFIIPTPLHLNDHTLAECGGRIMLVGLLTKNAATCVCIWELQKMTLLWKEVDRMPNIWCLDFYGKHVRMTCLGNKGLLMLSLRSRQMNRLVTynvmsrewlkvpgcvvprgRKRQWIACGTAFHPCLMATA
Low Complexity Region (SEG)
MGELAMlrqligqlqqflqlYGSFPPHNTDSCFLYFHSHQHQQLPEEQTHQLHRWCLPEVDDGAADDYYGFVMAAGKSGSCKMLEPVkpppskrsrkERNRGKLAGSTSTAEAMEQEIWKEFPEDLYEAVIARLPIATFFRFRSVCQKWNSLLKSHSFSQHCAQVPQGIPWFYTITHENVNSGAMYDPSLKKWHHPTISSLPTKMIILPVASAGGLVCFLDIGHRNFYVCNPLTQSFKELPARSVKVWSRVAVGMTLNGNSTSSGYKILWVGCDGEYEIYDSLRNSWTRPGSMPSNIKLPVSLNFRSQAVSVDGILYFMRSDPEGIVSYNMVTGVWKQFIIPTPLHLNDHTLAECGGRIMLVGLLTKNAATCVCIWELQKMTLLWKEVDRMPNIWCLDFYGKHVRMTCLGNKGLLMLSLRSRQMNRLVTYNVMSREWLKVPGCVVPRGRKRQWIACGTAFHPCLMATA
Disordered region (IsUnstruct)
*****MLRQLIGQLQQFLQLYGSFPPHNTDSCFLYFHSHQHQQL**EQTHQLHRWCLPEVDDGAADDYYGFVMAAG****************************************EIWKEFPEDLYEAVIARLPIATFFRFRSVCQKWNSLLKSHSFSQHCAQVPQGIPWFYTITHENVNSGAMYDPSLKKWHHPTISSLPTKMIILPVASAGGLVCFLDIGHRNFYVCNPLTQSFKELPARSVKVWSRVAVGMTLNGNSTSSGYKILWVGCDGEYEIYDSLRNSWTRPGSMPSNIKLPVSLNFRSQAVSVDGILYFMRSDPEGIVSYNMVTGVWKQFIIPTPLHLNDHTLAECGGRIMLVGLLTKNAATCVCIWELQKMTLLWKEVDRMPNIWCLDFYGKHVRMTCLGNKGLLMLSLRSRQMNRLVTYNVMSREWLKVPGCVVPRGRKRQWIACGTAFHPCLM***
Disordered Region (DISOPRED)
****AMLRQLIGQLQQFLQL*****************************HQLHRWCLPEVDDGAADD*****************************************************EFPEDLYEAVIARLPIATFFRFRSVCQKWNSLLKSHSFSQHCAQVPQGIPWFYTITHENVNSGAMYDPSLKKWHHPTISSLPTKMIILPVASAGGLVCFLDIGHRNFYVCNPLTQSFKELPARSVKVWSRVAVGMTLNGNSTSSGYKILWVGCDGEYEIYDSLRNSWTRPGSMPSNIKLPVSLNFRSQAVSVDGILYFMRSDPEGIVSYNMVTGVWKQFIIPTPLHLNDHTLAECGGRIMLVGLLTKNAATCVCIWELQKMTLLWKEVDRMPNIWCLDFYGKHVRMTCLGNKGLLMLSLRSRQMNRLVTYNVMSREWLKVPGCVVPRGRKRQWIACGTAFHPCLMA**
Disordered Region (DISEMBL)
MGELAMLRQLIGQLQQFLQLYGSFPPHNTDSCFLYFHSHQHQQLPEEQTHQLHRWCLPEVDDGAADDYYGFVMAAGKSGSCKM******************************MEQEIWKEFPEDLYEAVIARLPIATFFRFRSVCQKWNSLLKSHSFSQHCAQVPQGIPWFYTITHENVNSGAMYDPSLKKWHHPTISSLPTKMIILPVASAGGLVCFLDIGHRNFYVCNPLTQSFKELPARSVKVWSRVAVGMTLNGNSTSSGYKILWVGCDGEYEIYDSLRNSWTRPGSMPSNIKLPVSLNFRSQAVSVDGILYFMRSDPEGIVSYNMVTGVWKQFIIPTPLHLNDHTLAECGGRIMLVGLLTKNAATCVCIWELQKMTLLWKEVDRMPNIWCLDFYGKHVRMTCLGNKGLLMLSLRSRQMNRLVTYNVMSREWLKVPGCVVPRGRKRQWIACGTAFHPCLMATA
Disordered Region (DISPRO)
*GELAMLRQLIGQLQQFLQLYGSFPPHNTDSCFLYFHSHQHQQLPEEQTHQLHRWCLPEVDDGAADDYYGFVMAAGK***********************************AMEQEIWKEFPEDLYEAVIARLPIATFFRFRSVCQKWNSLLKSHSFSQHCAQVPQGIPWFYTITHENVNSGAMYDPSLKKWHHPTISSLPTKMIILPVASAGGLVCFLDIGHRNFYVCNPLTQSFKELPARSVKVWSRVAVGMTLNGNSTSSGYKILWVGCDGEYEIYDSLRNSWTRPGSMPSNIKLPVSLNFRSQAVSVDGILYFMRSDPEGIVSYNMVTGVWKQFIIPTPLHLNDHTLAECGGRIMLVGLLTKNAATCVCIWELQKMTLLWKEVDRMPNIWCLDFYGKHVRMTCLGNKGLLMLSLRSRQMNRLVTYNVMSREWLKVPGCVVPRGRKRQWIACGTAFHPCLMATA
Transmembrane Helix (TMHMM)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (MEMSAT)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooohhhhhhhhhhhhhhhhhhhhiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
TM Helix, Signal Peptide (MEMSAT_SVM)
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TM Helix, Signal Peptide (Phobius)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
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Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
MGELAMLRQLIGQLQQFLQLYGSFPPHNTDSCFLYFHSHQHQQLPEEQTHQLHRWCLPEVDDGAADDYYGFVMAAGKSGSCKMLEPVKPPPSKRSRKERNRGKLAGSTSTAEAMEQEIWKEFPEDLYEAVIARLPIATFFRFRSVCQKWNSLLKSHSFSQHCAQVPQGIPWFYTITHENVNSGAMYDPSLKKWHHPTISSLPTKMIILPVASAGGLVCFLDIGHRNFYVCNPLTQSFKELPARSVKVWSRVAVGMTLNGNSTSSGYKILWVGCDGEYEIYDSLRNSWTRPGSMPSNIKLPVSLNFRSQAVSVDGILYFMRSDPEGIVSYNMVTGVWKQFIIPTPLHLNDHTLAECGGRIMLVGLLTKNAATCVCIWELQKMTLLWKEVDRMPNIWCLDFYGKHVRMTCLGNKGLLMLSLRSRQMNRLVTYNVMSREWLKVPGCVVPRGRKRQWIACGTAFHPCLMATA
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	468	2.2.26 [Sep-21-2011]
Q9FZK1	467	F-box only protein 6 OS=A	yes	no	0.972	0.974	0.68	0.0
Q9LFV5	448	F-box/kelch-repeat protei	no	no	0.730	0.763	0.286	1e-26
Q39090	442	Protein UNUSUAL FLORAL OR	no	no	0.685	0.726	0.258	3e-26
Q9SMZ3	457	F-box only protein 13 OS=	no	no	0.773	0.792	0.237	1e-21
Q9M310	411	F-box/kelch-repeat protei	no	no	0.752	0.856	0.238	3e-15
Q9FHS6	403	F-box/kelch-repeat protei	no	no	0.683	0.794	0.268	1e-14
Q9FGY4	359	F-box protein At5g49610 O	no	no	0.572	0.746	0.216	1e-09
Q9SN20	382	Putative F-box protein At	no	no	0.549	0.672	0.228	6e-08
Q9LPW2	416	Putative F-box/kelch-repe	no	no	0.467	0.526	0.211	9e-08
Q9LSV6	361	Putative F-box protein At	no	no	0.408	0.529	0.259	1e-07

>sp|Q9FZK1|FBX6_ARATH F-box only protein 6 OS=Arabidopsis thaliana GN=FBX6 PE=2 SV=1

 Score =  654 bits (1688), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 323/475 (68%), Positives = 376/475 (79%), Gaps = 20/475 (4%)

Query: 3   ELAMLRQLIGQLQQFLQ------LYGSFPPHNTDSCFLYFHSHQHQQLPEEQTHQLHRWC 56
           ELAMLRQLIGQLQ+ L          S    ++   FL  H  Q+Q          + WC
Sbjct: 4   ELAMLRQLIGQLQELLHNGSPPPPSSSSSLSSSSPSFLVLHHPQYQ----------NGWC 53

Query: 57  LPEVDDGAADDYYGFVMAAGKS-GSCKMLEPVKPPPSKRSRKERNRGKLAGSTSTAEA-M 114
           LP ++D +ADD    VMA GK  G  KMLE VKPP  KR+RKER +GK           M
Sbjct: 54  LPCIEDTSADDCCDIVMAGGKRPGIFKMLETVKPP-VKRTRKERTQGKSCTEVDEISGNM 112

Query: 115 EQEIWKEFPEDLYEAVIARLPIATFFRFRSVCQKWNSLLKSHSFSQHCAQVPQGIPWFYT 174
           +QEIW+EFP+DL+E V++RLP+ATFF+FR+VC+KWN+L+ S SFS+   ++PQ IPWFYT
Sbjct: 113 DQEIWQEFPQDLFEDVVSRLPMATFFQFRAVCRKWNALIDSDSFSRCFTELPQTIPWFYT 172

Query: 175 ITHENVNSGAMYDPSLKKWHHPTISSLPTKMIILPVASAGGLVCFLDIGHRNFYVCNPLT 234
           ITHENVNSG +YDPSLKKWHHP I +LP K I+LP+ASAGGLVCFLDIGHRNFYV NPLT
Sbjct: 173 ITHENVNSGQVYDPSLKKWHHPIIPALPKKSIVLPMASAGGLVCFLDIGHRNFYVSNPLT 232

Query: 235 QSFKELPARSVKVWSRVAVGMTLNGNSTSSGYKILWVGCDGEYEIYDSLRNSWTRPGSMP 294
           +SF+ELPARS KVWSRVAVGMTLNGNSTS GYK+LWVGC+GEYE+YDSL N WT+ G++P
Sbjct: 233 KSFRELPARSFKVWSRVAVGMTLNGNSTSHGYKVLWVGCEGEYEVYDSLSNVWTKRGTIP 292

Query: 295 SNIKLPVSLNFRSQAVSVDGILYFMRSDPEGIVSYNMVTGVWKQFIIPTPLHLNDHTLAE 354
           SNIKLPV LNF+SQ V++   LYFM +DPEGI+SY+MV+G WKQFIIP P  L+DHTLA 
Sbjct: 293 SNIKLPVLLNFKSQPVAIHSTLYFMLTDPEGILSYDMVSGKWKQFIIPGPPDLSDHTLAA 352

Query: 355 CGGRIMLVGLLTKNAATCVCIWELQKMTLLWKEVDRMPNIWCLDFYGKHVRMTCLGNKG- 413
           CG R+MLVGLLTKNAATCVCIWELQKMTLLWKEVDRMPNIWCL+FYGKH+RM CLGNKG 
Sbjct: 353 CGERLMLVGLLTKNAATCVCIWELQKMTLLWKEVDRMPNIWCLEFYGKHIRMNCLGNKGC 412

Query: 414 LLMLSLRSRQMNRLVTYNVMSREWLKVPGCVVPRGRKRQWIACGTAFHPCLMATA 468
           L++LSLRSRQMNRL+TYN ++REW KVPGC VPRGRKR WIACGTAFHP   A A
Sbjct: 413 LILLSLRSRQMNRLITYNAVTREWTKVPGCTVPRGRKRLWIACGTAFHPSPTARA 467

Arabidopsis thaliana (taxid: 3702)

>sp|Q9LFV5|FK111_ARATH F-box/kelch-repeat protein At5g15710 OS=Arabidopsis thaliana GN=At5g15710 PE=2 SV=1

 Score =  121 bits (303), Expect = 1e-26,   Method: Compositional matrix adjust.
 Identities = 107/373 (28%), Positives = 158/373 (42%), Gaps = 31/373 (8%)

Query: 87  VKPPPSKRSRKERNRGKLAGSTSTAEAMEQEIWKEFPEDLYEAVIARLPIATFFRFRSVC 146
           VK  P  R  +E               ME  IW   PEDL   ++AR+P    FR RSVC
Sbjct: 74  VKTKP--RGLEEETVASFGKQVVADVQMEDGIWAMLPEDLLNEILARVPPFMIFRIRSVC 131

Query: 147 QKWNSLLKSHSFSQHCAQVPQGIPWFYTI--THENVNSGAMYDPSLKKWHHPTISSLPTK 204
           +KWN +L+ +SF +  + V    P   T       +   +++   LK W+    + LP  
Sbjct: 132 KKWNLILQDNSFLKFHSNVSSHGPCLLTFWKNSPQIPQCSVFSLPLKTWYKIPFTFLPPW 191

Query: 205 MIILPVASAGGLVCFLDIGHRNF--YVCNPLTQSFKELPA-------RSVKVWSRVAVGM 255
              L V S+GGLVCF  +    F   VCNPL QS++ LP+       + + V  R     
Sbjct: 192 AFWL-VGSSGGLVCFSGLDGLTFRTLVCNPLMQSWRTLPSMHYNQQRQLIMVVDRSDKSF 250

Query: 256 TLNGNSTSSGYKILWVGCDGEYEIYDSLRNSWTRPGSMPSNIKLPVSLNFRSQAVSVDGI 315
            +   S   G K L        E+YDS  + W+    MP+     V+L   S+    D  
Sbjct: 251 KVIATSDIYGDKSL------PTEVYDSKTDKWSLHQIMPA-----VNL-CSSKMAYCDSR 298

Query: 316 LYFMRSDPEGIVSYNMVTGVWKQFIIPTPLHLND-HTLAECGGRIMLVGLL-TKNAATCV 373
           LY     P G++ Y + +G W+      P  L D + +A    R+ LVG +   +    +
Sbjct: 299 LYLETLSPLGLMMYRLDSGQWEHIPAKFPRSLLDGYLVAGTQKRLFLVGRIGLYSTLQSM 358

Query: 374 CIWELQKMTLLWKEVDRMPNIWCLDFYGKHV-RMTCLGNKGLLMLSLRSRQMNRLVTYNV 432
            IWEL    + W E+ RMP  +          R  C G   L+  +  S    + + YNV
Sbjct: 359 RIWELDHTKVSWVEISRMPPKYFRALLRLSAERFECFGQDNLICFT--SWNQGKGLLYNV 416

Query: 433 MSREWLKVPGCVV 445
             + W  + GC +
Sbjct: 417 DKKIWSWISGCAL 429

Arabidopsis thaliana (taxid: 3702)

>sp|Q39090|UFO_ARATH Protein UNUSUAL FLORAL ORGANS OS=Arabidopsis thaliana GN=UFO PE=1 SV=2

 Score =  120 bits (301), Expect = 3e-26,   Method: Compositional matrix adjust.
 Identities = 94/363 (25%), Positives = 162/363 (44%), Gaps = 42/363 (11%)

Query: 114 MEQEIWKEFPEDLYEAVIARLPIATFFRFRSVCQKWNSLLKSHSFSQHCAQ-VPQGIPWF 172
           M+  IW + P  L + VIA LP   FFR R VC+++ SLL S++F +   Q +P     F
Sbjct: 42  MDGRIWSKLPPPLLDRVIAFLPPPAFFRTRCVCKRFYSLLFSNTFLETYLQLLPLRHNCF 101

Query: 173 YTITHENVNS-----------------GAMYDPSLKKWHHPTISSLPTKMIILPVASAGG 215
               H+ + S                 G ++DP+  +W+  + + +P+     P  S+GG
Sbjct: 102 LFFKHKTLKSYIYKRGGTNDDDSNKAEGFLFDPNEIRWYRLSFAYIPSGFY--PSGSSGG 159

Query: 216 LVCFL--DIGHRNFYVCNPLTQSFKELPARS-VKVWSRV-------AVGMTLNGNSTSSG 265
           LV ++  + G +   +CNPL  S  +LP  S  +++  +       ++ +T+ G+   S 
Sbjct: 160 LVSWVSEEAGLKTILLCNPLVGSVSQLPPISRPRLFPSIGLSVTPTSIDVTVAGDDLISP 219

Query: 266 YKILWVGCDGEYEIYDSLRNSWTRPGSMPSNIKLPVSLNFRSQAVSVDGILYFMRSDPEG 325
           Y +  +  +  +       + W    S+P    L        + V V G  Y M   P  
Sbjct: 220 YAVKNLSSESFHVDAGGFFSLWAMTSSLPRLCSLE-----SGKMVYVQGKFYCMNYSPFS 274

Query: 326 IVSYNMVTGVWKQFIIPTPLHLNDHTLAECGGRIMLVGLLTK---NAATCVCIWELQKMT 382
           ++SY +    W +   P    L   +L E  GR++LV  + K   N    + +W LQ+  
Sbjct: 275 VLSYEVTGNRWIKIQAPMRRFLRSPSLLESKGRLILVAAVEKSKLNVPKSLRLWSLQQDN 334

Query: 383 LLWKEVDRMPNIWCLDFYGKH--VRMTCLGNKGLLMLSLRSRQMNRLVTYNVMSREWLKV 440
             W E++RMP      F  +       C+GN+  +M+ LR   +  L  ++++ + WL V
Sbjct: 335 ATWVEIERMPQPLYTQFAAEEGGKGFECVGNQEFVMIVLRGTSLQLL--FDIVRKSWLWV 392

Query: 441 PGC 443
           P C
Sbjct: 393 PPC 395

Component of SCF(ASK-cullin-F-box) E3 ubiquitin ligase complexes, which may mediate the ubiquitination and subsequent proteasomal degradation of target proteins (By similarity). Considered as a meristem identity factor required for normal growth of the young floral meristem. Acts together with LEAFY to positively regulate the B class floral homeotic genes APETALA3 and PISTILLATA. In this way, operates as a region-specific regulator for petal and stamen development. Alternatively, may play a role as a negative regulator of the C class floral homeotic genes. Interacts together with the SKP1-like protein ASK1 to form a ubiquitin E3 ligase complex and could indirectly promote the ubiquitination and degradation of specific proteins controlling the floral primordia development like repressors of B class floral homeotic genes.

Arabidopsis thaliana (taxid: 3702)

>sp|Q9SMZ3|FBX13_ARATH F-box only protein 13 OS=Arabidopsis thaliana GN=FBX13 PE=2 SV=2

 Score =  105 bits (261), Expect = 1e-21,   Method: Compositional matrix adjust.
 Identities = 101/425 (23%), Positives = 182/425 (42%), Gaps = 63/425 (14%)

Query: 100 NRGKLAGSTSTAEAMEQEI---WKEFP-----EDLYEAVIARLPIATFFRFRSVCQKWNS 151
           N G   G   + +  E  +     EFP     +D+ E V++ LP + FFR  SVC++W S
Sbjct: 40  NMGFSTGKRKSRDEEEDRVSFFASEFPMDDLNDDVLERVLSWLPTSCFFRMSSVCKRWKS 99

Query: 152 LLKSHSFSQHCAQVPQGIPWFYTITHENVNSGAMYDPSLKKWHHPTISSL--PTKMIILP 209
              S SF   C+Q+P   PWF+ I +++ +S  ++D +   W +          +   +P
Sbjct: 100 SQTSKSFKLACSQIPTRDPWFFMIDNDSNSSSFVFDSTENSWKNLNRRDFLHHHRQDFIP 159

Query: 210 VASAGGLVCFLDIGHRNFYVCNPLTQSFKELPARSVKVWSRVAVGMTLNGNSTSSGYKIL 269
           VAS+GGL+C+      +F + NPLT S +++P++       +          T S Y ++
Sbjct: 160 VASSGGLLCYRCSISGDFLLRNPLTGSSRDIPSQDNNNNKPLQAVAMTTTTVTPSSYTLV 219

Query: 270 WVGCDGE-----YEIYDSLRNSWTRPGSMPS----------------------------- 295
            +   GE     ++IY+S  +SW++   + S                             
Sbjct: 220 TIS--GEIPNLSFKIYESNADSWSKDQELESVKNNDSSLHDDYDTDSGTVYFLSKQGNVV 277

Query: 296 ----NIKLPVSLNFRSQAVSVD--GILYFMRSDPEGIVSYNMVTGVWKQF--IIPTPLHL 347
               N++   S  + S     D   I+YF+ S    IV+ ++    + +   ++P P   
Sbjct: 278 VASNNLQRSPSKQYSSVITVTDEAEIVYFLSS-YGTIVACDLTKRCFTELPKLLP-PFLE 335

Query: 348 NDHTLAECGGRIMLVGLLTKNAATCVCIWELQKMTLLWKEVDRMPNIWCLDFYGKHVRMT 407
               L EC G + ++ L     +  + IW L      W +V  +P     + YGK   + 
Sbjct: 336 YSIDLVECEGTMYVILLSEFFESASLRIWRLDN-NREWVQVGMLPPALSHELYGKKGDIN 394

Query: 408 CL---GNKGLLMLSLRSRQMN-RLVTYNVMSREWLKVPGCVVPRGRKRQWIACGTAFHPC 463
           C+   GNK L+  +    ++  R   Y++++ EW ++P C    G    +++   +F P 
Sbjct: 395 CVGGAGNKILVCFNASPPEVYCRYFVYDLVAEEWNELPKC-FKDGEAVDFVS-ALSFQPR 452

Query: 464 LMATA 468
           + AT 
Sbjct: 453 IEATV 457

Arabidopsis thaliana (taxid: 3702)

>sp|Q9M310|FBK77_ARATH F-box/kelch-repeat protein At3g61590 OS=Arabidopsis thaliana GN=At3g61590 PE=1 SV=1

 Score = 83.6 bits (205), Expect = 3e-15,   Method: Compositional matrix adjust.
 Identities = 98/411 (23%), Positives = 174/411 (42%), Gaps = 59/411 (14%)

Query: 91  PSKRSRKERNRGKLAGSTSTAEAMEQEIWKEFPEDLYEAVIARLPIATFFRFRSVCQKWN 150
           P   S +E++  +    T + +++        P+DL E +++ LPIA+ FR  +VC++WN
Sbjct: 19  PEAESYREQSDDEAKVETFSMDSL-------LPDDLLERILSFLPIASIFRAGTVCKRWN 71

Query: 151 SLLKSHSFSQHCAQ--VPQGIPWFYTITHENVNSGAMYDPSLKKWHHPTISSLPTKMIIL 208
            ++ S  F  + +   V Q  PW++  T  +  SG  YDP ++KW+   +  + T     
Sbjct: 72  EIVSSRRFLCNFSNNSVSQR-PWYFMFTTTDDPSGYAYDPIIRKWYSFDLPCIETSNWF- 129

Query: 209 PVASAGGLVCFLDIGHRN-FYVCNPLTQSFKEL---PARSVKVWSRVAVGMTLNG---NS 261
            VAS+ GLVCF+D   RN  YV NP+T+ ++ L   P      ++ ++  +       N 
Sbjct: 130 -VASSCGLVCFMDNDCRNKIYVSNPITKQWRTLIEPPGHKSTDYTAMSTSVNRANQAVNR 188

Query: 262 TSSGYKILWVGC----------DGEYEIYDSLRNSWTRPGSMPSNIKLPVSLNFR--SQA 309
            +  Y +  V            D    +Y S   +WT        +   V   +R  +++
Sbjct: 189 ANRSYSVSIVKSKQVPGNFFQWDLSIHLYSSETMTWT-------TLVNDVLSGWRGGNES 241

Query: 310 VSVDGILYFM------RSDPEGIVSYNMVTGVWK------QFIIPTPLHLNDHTLAECGG 357
           V  + +LYFM           G+++ N+ +          +  IP P  L    L     
Sbjct: 242 VICNNVLYFMIYSTGGSDHRHGLIASNLSSIGSPSSGILMRSFIPMPCSLTCGRLMNLRE 301

Query: 358 RIMLVGLLTKN----AATCVCIWELQKMTLLWKEVDRMPNIWCLDFYGKHVRMTCLGNKG 413
           R+++VG + K+        + IW L+     W E+ +MP  +   F          G   
Sbjct: 302 RLVIVGGIGKHDRPEVIKGIGIWVLKGKE--WVEMAKMPQRFFQGFGEFDEVFASSGTDD 359

Query: 414 LLMLSLRSRQMNRLVTYNVMSREWLKVPGCVVPRGRKRQWIACGTAFHPCL 464
           L+   ++S     L+T+++  + W     C V +    Q +  G  F P L
Sbjct: 360 LVY--IQSYGSPALLTFDMNLKYWRWSQKCPVTKKFPLQ-LFTGFCFEPRL 407

Component of SCF(ASK-cullin-F-box) E3 ubiquitin ligase complexes, which may mediate the ubiquitination and subsequent proteasomal degradation of target proteins.

Arabidopsis thaliana (taxid: 3702)

>sp|Q9FHS6|FK119_ARATH F-box/kelch-repeat protein At5g43190 OS=Arabidopsis thaliana GN=At5g43190 PE=2 SV=1

 Score = 81.3 bits (199), Expect = 1e-14,   Method: Compositional matrix adjust.
 Identities = 96/357 (26%), Positives = 156/357 (43%), Gaps = 37/357 (10%)

Query: 109 STAEAMEQEIWKEFPEDLYEAVIARLPIATFFRFRSVCQKWNSLLKSHSF-SQHCAQVPQ 167
           S+   ++  IW   P  L E +++ LP  T    RS+ +   SL+ S SF S H   +P 
Sbjct: 38  SSPTNLDPNIWSNLPNHLLEHILSLLPFKTLLTLRSISRHLRSLILSPSFISDHSFSLPS 97

Query: 168 GIPWFYTITH-ENVNSGAMYDPSLKKW-HHPTISSLPTKMIILPVASAGGLVCF--LDIG 223
               F  ++H ++ NS  +++P+L  W   P   SL        ++S+ GL+CF      
Sbjct: 98  ----FLLLSHPQSFNSFPLFNPNLISWCTLPLPRSLSLTCASSLLSSSNGLLCFSLSPSS 153

Query: 224 HRNFYVCNPLTQSFKELPARSVKVWSRVAVGMTLNGNSTSSGYKILWVGCDGEYE----- 278
             +  + NPLT+S     +RS+K+         L+  ++  GYKI  +            
Sbjct: 154 VSSLSIFNPLTRS-----SRSIKLPCYPFPFELLSLVTSPKGYKIFTLCSSSSAASSRSV 208

Query: 279 -IYDSLRNSWTRPGSMPSNIKLPVSLNFRSQAVSVDGILYFMRSDPEGIVSYNMVTGVWK 337
            +YDS   SW + G +  +  LP   N     V  +G LYF RS+P  IVS ++  G W 
Sbjct: 209 CLYDSGDRSWRKFGGV--DQVLPRGFN--QDGVFYNGSLYFARSEPFLIVSVDLNDGKWT 264

Query: 338 QF----IIPTPLHLNDHTLA---ECGGRIMLVGLLTKNAATCVCIWELQKMTLLWKEVDR 390
                 + P    +    L    E     M+ G+ +      + IWE ++ T  W EV+ 
Sbjct: 265 TATGDGVFPADDEITFARLVSDPEKKILYMVGGIGSNGICRSIKIWEFKEETESWIEVET 324

Query: 391 MPNIWCLDF----YGKHVRMTCLGNKGLLMLSLRSRQMNRLVTYNVMSREWLKVPGC 443
           +P+I C  F    Y  +  + CL +K   M+ +       ++ ++V  R W  VP C
Sbjct: 325 LPDIVCRKFTSVCYHNYEHVYCLWHKE--MICVCCYNWPEILFFHVGRRTWHWVPKC 379

Arabidopsis thaliana (taxid: 3702)

>sp|Q9FGY4|FB341_ARATH F-box protein At5g49610 OS=Arabidopsis thaliana GN=At5g49610 PE=1 SV=1

 Score = 65.1 bits (157), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 65/300 (21%), Positives = 138/300 (46%), Gaps = 32/300 (10%)

Query: 114 MEQEIWKEFPEDLYEAVIARLPIATFFRFRSVCQKWNSLLKSHSFSQHCAQVPQGIPWFY 173
           M+ +    FP+++   ++ARLP+ + FRF+SVC+ W  L     F+    Q+   +    
Sbjct: 1   MDNQKGALFPDEVILQILARLPVKSLFRFKSVCKSWYRLPSDKYFTSLFNQL--SVKEQL 58

Query: 174 TITHENVNSGAMYDPSLKKWHHPTISSLPTKMIILPVASAGGLVCFLDIGHRN-FYVCNP 232
            +   + +S  +   +L+     ++  +  ++ I    S+ GL+C   I  +  +YVCNP
Sbjct: 59  LVAEVSDSSSLICVDNLRGVSELSLDFVRDRVRIR--VSSNGLLCCSSIPEKGVYYVCNP 116

Query: 233 LTQSFKELPARSVKVWSRV-----AVGMTLNGNSTSSGYKILWVGC--------DGEY-- 277
            T+ +++LP    +  +R      A  + L  + + + + ++  G         DG +  
Sbjct: 117 STREYRKLPKSRERPVTRFYPDGEATLVGLACDLSKNKFNVVLAGYHRSFGQRPDGSFIC 176

Query: 278 EIYDSLRNSWTRPGSMPSNIKLPVSLNFRSQAVSVDGILYFMRSDPEGIVSYNMVTGVWK 337
            ++DS  N W +  S+        +   ++Q V V+G+L+++ S    I++ ++   VW+
Sbjct: 177 LVFDSESNKWRKFVSVLEECSF--THMSKNQVVFVNGMLHWLMSGLCYILALDVEHDVWR 234

Query: 338 QFIIPTPLHL-----NDHTLAECGGRIMLVGLLTKNAATCVCIWELQKM-TLLWKEVDRM 391
           +  +P  + +     N   L E  G + ++ L    +   + IW++ +  T  W  VD +
Sbjct: 235 KISLPDEIRIGNGGGNRVYLLESDGFLSVIQL----SDVWMKIWKMSEYETETWSVVDSI 290

Arabidopsis thaliana (taxid: 3702)

>sp|Q9SN20|FB200_ARATH Putative F-box protein At3g49980 OS=Arabidopsis thaliana GN=At3g49980 PE=4 SV=1

 Score = 59.3 bits (142), Expect = 6e-08,   Method: Compositional matrix adjust.
 Identities = 67/293 (22%), Positives = 123/293 (41%), Gaps = 36/293 (12%)

Query: 122 FPEDLYEAVIARLPIATFFRFRSVCQKWNSLLKSHSFS-QHCAQVPQGIPWFYTITHE-- 178
            P++L E ++ R+P  +  + R  C++WN L    +FS +H  + P+   +  T+  E  
Sbjct: 5   LPQELLEEILCRVPATSLKQLRLTCKEWNRLFNDRTFSRKHFDKAPK--QFLITVLEERC 62

Query: 179 -------NVNSGAMYDPSLKKWHHPTISSLPTKMIILPVASAGGLVCFLDIGHRNFYVCN 231
                  N++SG   +    +       S  +++II+ +    GL     +      V N
Sbjct: 63  RLSSLSINLHSGFPSEEFTGELSPIDYHSNSSQVIIMKIFHCDGLFVCTILKDTRIVVWN 122

Query: 232 PLT------QSFKELPARSVKVWSRVAVGMTLNGNSTSSGYKIL----WVGCDGEYEIYD 281
           P T      Q+ + L            +G   +  S+   YKIL    +   D E++IYD
Sbjct: 123 PCTGQKKWIQTGENLDENG----QDFVLGYYQDNKSSDKSYKILSYKGYNYGDQEFKIYD 178

Query: 282 SLRNSWTRPGSMPSNIKLPVSLNFRSQAVSVDGILYF----MRSDPEGIVSYNMVTGVWK 337
              N+W      P         ++R   VS+ G  Y+    ++ +  G++S++  T  ++
Sbjct: 179 IKSNTWRNLDVTPIPGNYFTCSDYR---VSLKGNTYWFAYDLKDEQLGLISFDYTTERFE 235

Query: 338 QFIIPTPLHLNDH--TLAECGGRIMLVGLLTKNAATCVCIWELQKMTLLWKEV 388
           +  +P    ++DH  +L+  G   + V L  K+A     IW   KM    KE+
Sbjct: 236 RLWLPFQCDISDHDYSLSVVGEEKLSVVLQLKDAPRRE-IWITNKMDDETKEM 287

Arabidopsis thaliana (taxid: 3702)

>sp|Q9LPW2|FBK2_ARATH Putative F-box/kelch-repeat protein At1g12870 OS=Arabidopsis thaliana GN=At1g12870 PE=4 SV=2

 Score = 58.9 bits (141), Expect = 9e-08,   Method: Compositional matrix adjust.
 Identities = 61/288 (21%), Positives = 120/288 (41%), Gaps = 69/288 (23%)

Query: 96  RKERNRGKLAGSTSTAEAMEQEIWKEFPEDLYEAVIARLPIATFFRFRSVCQKWNSLLKS 155
           RK R +  +  S+S             P+D+ E +  +LP+    RF+S+ ++W S L+S
Sbjct: 19  RKRRYKKLMIASSS------------LPDDVVEEIFLKLPVKALMRFKSLSKQWRSTLES 66

Query: 156 HSFSQHCAQV-------------------PQGIPWFYTITHENVN--SGAMYDPSLKKWH 194
             FSQ   ++                   P     F TI+ E+V+  S A+++   + +H
Sbjct: 67  CYFSQRHLKIAERSHVDHPKVMIITEKWNPDIEISFRTISLESVSFLSSALFNFP-RGFH 125

Query: 195 HPTISSLPTKMIILPVASAGGLVCFLDIGHRNFYVCNPLTQSFKELPARSVKVWS----- 249
           HP  +S           S  G+ C      ++ YV NP T+ F++LP    +++      
Sbjct: 126 HPIYAS----------ESCDGIFCIHSPKTQDIYVVNPATRWFRQLPPARFQIFMHKLNP 175

Query: 250 -----RVAVGMTLNGNSTSSGYKILWV-GCDG----EYEIYDSLRNSWTRPGSMPSNIKL 299
                R  + +       ++ YK++W+   D     + E++D   N+W     +PS    
Sbjct: 176 TLDTLRDMIPVNHLAFVKATDYKLVWLYNSDASRVTKCEVFDFKANAWRYLTCIPS---- 231

Query: 300 PVSLNFRSQAVSVDGILYFMRSDPEG---IVSYNMVTGVWKQFIIPTP 344
              +    +  S +G LY+          +++ ++ T +++  ++P P
Sbjct: 232 -YRIYHDQKPASANGTLYWFTETYNAEIKVIALDIHTEIFR--LLPKP 276

Arabidopsis thaliana (taxid: 3702)

>sp|Q9LSV6|FB186_ARATH Putative F-box protein At3g25460 OS=Arabidopsis thaliana GN=At3g25460 PE=4 SV=1

 Score = 58.2 bits (139), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 56/216 (25%), Positives = 91/216 (42%), Gaps = 25/216 (11%)

Query: 121 EFPEDLYEAVIARLPIATFFRFRSVCQKWNSLLKSHSF-SQHCAQVPQG---IPW----- 171
           E PEDL   ++ R+P  +  R RS C+ WN L     F S+HC + P+    + W     
Sbjct: 5   ELPEDLLVEILCRVPATSLKRLRSTCKLWNHLYNDKRFKSKHCHKAPRQSLILMWKNFGF 64

Query: 172 -FYTITHENVNSGAMYDPSLKKWHHPTISSLPTKMIILPVASAGGLVCFLDIGHRN--FY 228
              +I  + V+   +        HH ++          P+    GL+  +++   N    
Sbjct: 65  SSISINLQRVSPIEVTGELNLIDHHSSLGMFRNS----PLCQTSGLLLCVNVEKINTRLV 120

Query: 229 VCNPLTQSFKELPARSVKVWSRVAVGMTLNGNSTSSGYKILWVGCDG--EYEIYDSLRNS 286
           V NP T   K +  R +      A+G   +  S ++ YKIL  G  G  E+EIY+   NS
Sbjct: 121 VWNPCTGKTKWIQHRRMGYICNYALGSYQDKKSDNNSYKILSHGIYGGQEFEIYEINSNS 180

Query: 287 WTRPGSMPSNIKLPVSLNFRSQAVSVDGILYFMRSD 322
           W         + + V  +   + VS+ G  Y+  +D
Sbjct: 181 WRI-------LDVTVDSSLYIENVSLKGKTYWFATD 209

Arabidopsis thaliana (taxid: 3702)

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	468
219879374	468	F-box family protein [Citrus trifoliata]	1.0	1.0	0.982	0.0
377684866	495	F-box family protein [Prunus persica]	0.995	0.941	0.812	0.0
206572109	472	Fbox protein [Malus x domestica]	0.980	0.972	0.777	0.0
255547692	470	conserved hypothetical protein [Ricinus	0.985	0.980	0.807	0.0
225425400	522	PREDICTED: F-box only protein 6-like [Vi	0.974	0.873	0.783	0.0
224053501	481	f-box family protein [Populus trichocarp	0.995	0.968	0.792	0.0
356540130	450	PREDICTED: F-box only protein 6-like [Gl	0.959	0.997	0.744	0.0
356565896	462	PREDICTED: F-box only protein 6-like [Gl	0.895	0.906	0.807	0.0
449445668	463	PREDICTED: F-box only protein 6-like [Cu	0.989	1.0	0.752	0.0
255646553	462	unknown [Glycine max]	0.895	0.906	0.802	0.0

>gi|219879374|gb|ACL51019.1| F-box family protein [Citrus trifoliata]

 Score =  966 bits (2497), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 460/468 (98%), Positives = 462/468 (98%)

Query: 1   MGELAMLRQLIGQLQQFLQLYGSFPPHNTDSCFLYFHSHQHQQLPEEQTHQLHRWCLPEV 60
           MGELAMLRQLIGQLQQFLQLYGSFPPHNTDSCFLYFHSHQHQQLPEEQTHQLHRWCLPEV
Sbjct: 1   MGELAMLRQLIGQLQQFLQLYGSFPPHNTDSCFLYFHSHQHQQLPEEQTHQLHRWCLPEV 60

Query: 61  DDGAADDYYGFVMAAGKSGSCKMLEPVKPPPSKRSRKERNRGKLAGSTSTAEAMEQEIWK 120
           DD AADDYYGFVMAAGKSGSCKMLEPVKPPPSKRSRKERNRGKLAGSTSTAEAMEQEIWK
Sbjct: 61  DDSAADDYYGFVMAAGKSGSCKMLEPVKPPPSKRSRKERNRGKLAGSTSTAEAMEQEIWK 120

Query: 121 EFPEDLYEAVIARLPIATFFRFRSVCQKWNSLLKSHSFSQHCAQVPQGIPWFYTITHENV 180
           EFPEDLYEAVIARLPIATFFRFRSVCQKWNSLL+SHSFSQHCAQVPQG PWFYTITHENV
Sbjct: 121 EFPEDLYEAVIARLPIATFFRFRSVCQKWNSLLESHSFSQHCAQVPQGNPWFYTITHENV 180

Query: 181 NSGAMYDPSLKKWHHPTISSLPTKMIILPVASAGGLVCFLDIGHRNFYVCNPLTQSFKEL 240
           NSGAMYDPSLKKWHHPTISSLPTKMIILPVASA GLVCFLDIGHRNFYVCNPLTQSFKEL
Sbjct: 181 NSGAMYDPSLKKWHHPTISSLPTKMIILPVASARGLVCFLDIGHRNFYVCNPLTQSFKEL 240

Query: 241 PARSVKVWSRVAVGMTLNGNSTSSGYKILWVGCDGEYEIYDSLRNSWTRPGSMPSNIKLP 300
           PARSVKVWSRVAVGMTLNGNSTSSGYKILWVGCDGEYEIYDSLRNSWTRPGSMPSNIKLP
Sbjct: 241 PARSVKVWSRVAVGMTLNGNSTSSGYKILWVGCDGEYEIYDSLRNSWTRPGSMPSNIKLP 300

Query: 301 VSLNFRSQAVSVDGILYFMRSDPEGIVSYNMVTGVWKQFIIPTPLHLNDHTLAECGGRIM 360
           +SLNFRSQAVSVDGILYFMRSDPEGIVSYNMVTGVWKQFIIP PLHLNDHTLAECGGRIM
Sbjct: 301 LSLNFRSQAVSVDGILYFMRSDPEGIVSYNMVTGVWKQFIIPAPLHLNDHTLAECGGRIM 360

Query: 361 LVGLLTKNAATCVCIWELQKMTLLWKEVDRMPNIWCLDFYGKHVRMTCLGNKGLLMLSLR 420
           LVGLLTKNAATCVCIWELQKMTLLWKEVDRMPNIWCLDFYGKHVRMTCLGNKGLLMLS R
Sbjct: 361 LVGLLTKNAATCVCIWELQKMTLLWKEVDRMPNIWCLDFYGKHVRMTCLGNKGLLMLSSR 420

Query: 421 SRQMNRLVTYNVMSREWLKVPGCVVPRGRKRQWIACGTAFHPCLMATA 468
           SRQMNRLVTYNVMSREWLKVPGCVVPRGRKRQWIACGTAFHPCL ATA
Sbjct: 421 SRQMNRLVTYNVMSREWLKVPGCVVPRGRKRQWIACGTAFHPCLTATA 468

Source: Citrus trifoliata

Species: Citrus trifoliata

Genus: Citrus

Family: Rutaceae

Order: Sapindales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|377684866|gb|AFB74452.1| F-box family protein [Prunus persica]

 Score =  793 bits (2049), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 386/475 (81%), Positives = 418/475 (88%), Gaps = 9/475 (1%)

Query: 1   MGELAMLRQLIGQLQQFLQLYGSFPPHNTDSCFLYFHSHQHQ-QLP--------EEQTHQ 51
           M  LAMLRQLIGQLQ+ +++YGS P ++             Q QLP        + Q HQ
Sbjct: 1   MEGLAMLRQLIGQLQELVEVYGSHPHYHLQQHHHLHLQPSLQFQLPLLNHHSQQQHQQHQ 60

Query: 52  LHRWCLPEVDDGAADDYYGFVMAAGKSGSCKMLEPVKPPPSKRSRKERNRGKLAGSTSTA 111
             RWC   VD+G+ DDYY F+MAAGKSGS KMLEP KPPP+KRSRKER RGK +G+T+T 
Sbjct: 61  HPRWCPINVDEGSPDDYYSFMMAAGKSGSLKMLEPCKPPPTKRSRKERTRGKSSGTTNTT 120

Query: 112 EAMEQEIWKEFPEDLYEAVIARLPIATFFRFRSVCQKWNSLLKSHSFSQHCAQVPQGIPW 171
           E MEQ IWK+FPEDLYEAVIARLPIATFFRFR+VC+KWNSLL S SFSQHCA+VPQ  PW
Sbjct: 121 EPMEQHIWKDFPEDLYEAVIARLPIATFFRFRTVCRKWNSLLDSESFSQHCAEVPQATPW 180

Query: 172 FYTITHENVNSGAMYDPSLKKWHHPTISSLPTKMIILPVASAGGLVCFLDIGHRNFYVCN 231
           FYTITHENVNSGAMYDPSLKKWHHPTISSLPTK+I+LPVASAGGLVCFLDIG+RNFYVCN
Sbjct: 181 FYTITHENVNSGAMYDPSLKKWHHPTISSLPTKLIVLPVASAGGLVCFLDIGNRNFYVCN 240

Query: 232 PLTQSFKELPARSVKVWSRVAVGMTLNGNSTSSGYKILWVGCDGEYEIYDSLRNSWTRPG 291
           PL QSFKELPARSVKVWSRVAVGMTLNG+STS GYKILWVGCDGEYE+YDS+RNSW RPG
Sbjct: 241 PLNQSFKELPARSVKVWSRVAVGMTLNGSSTSEGYKILWVGCDGEYEVYDSVRNSWIRPG 300

Query: 292 SMPSNIKLPVSLNFRSQAVSVDGILYFMRSDPEGIVSYNMVTGVWKQFIIPTPLHLNDHT 351
            MPS++KLP+SLNFRSQAVS+D  LYFMRSDPEGIVSY+MVTG+WKQFIIPTPLHL DHT
Sbjct: 301 IMPSSVKLPLSLNFRSQAVSIDDTLYFMRSDPEGIVSYDMVTGIWKQFIIPTPLHLTDHT 360

Query: 352 LAECGGRIMLVGLLTKNAATCVCIWELQKMTLLWKEVDRMPNIWCLDFYGKHVRMTCLGN 411
           LAECGGRIMLVGLLTKNAATCVCIWELQKMTLLWKEVDRMPNIWCL+FYGKHVRMTCLGN
Sbjct: 361 LAECGGRIMLVGLLTKNAATCVCIWELQKMTLLWKEVDRMPNIWCLEFYGKHVRMTCLGN 420

Query: 412 KGLLMLSLRSRQMNRLVTYNVMSREWLKVPGCVVPRGRKRQWIACGTAFHPCLMA 466
           KGLLMLSLRSRQMNRLVTYNV SREWLKVPGCVVP GRKRQWIACGTAF+PCL A
Sbjct: 421 KGLLMLSLRSRQMNRLVTYNVSSREWLKVPGCVVPHGRKRQWIACGTAFYPCLTA 475

Source: Prunus persica

Species: Prunus persica

Genus: Prunus

Family: Rosaceae

Order: Rosales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|206572109|gb|ACI13687.1| Fbox protein [Malus x domestica]

 Score =  776 bits (2003), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 374/481 (77%), Positives = 405/481 (84%), Gaps = 22/481 (4%)

Query: 1   MGELAMLRQLIGQLQQF-------------LQLYGSFPPHNTDSCFLYFHSHQHQQLPEE 47
           M  LAMLRQLIGQLQ+              LQL    PP            H H Q P +
Sbjct: 1   MEGLAMLRQLIGQLQELVGSHPPPPHYHHHLQLQFQPPP---------LLRHHHSQQPPQ 51

Query: 48  QTHQLHRWCLPEVDDGAADDYYGFVMAAGKSGSCKMLEPVKPPPSKRSRKERNRGKLAGS 107
             H   RWC   VD+G+ADDYY  +MAAGKS S KMLEP KPPP+KRSRKE+ RGK +G+
Sbjct: 52  DHHHHLRWCPINVDEGSADDYYSIMMAAGKSRSFKMLEPCKPPPTKRSRKEQTRGKSSGT 111

Query: 108 TSTAEAMEQEIWKEFPEDLYEAVIARLPIATFFRFRSVCQKWNSLLKSHSFSQHCAQVPQ 167
           T+T E MEQ IWK+FPEDLYEAVIARLP+ATFFRFR+VC+KWNSLL S SFSQHCA+VPQ
Sbjct: 112 TNTTEPMEQHIWKDFPEDLYEAVIARLPVATFFRFRTVCRKWNSLLDSESFSQHCAEVPQ 171

Query: 168 GIPWFYTITHENVNSGAMYDPSLKKWHHPTISSLPTKMIILPVASAGGLVCFLDIGHRNF 227
             PWFYTITHENVNSGAMYDPSLKKWHHPTI SLPTK+I+LPVASAGGLVCFLDIG+RNF
Sbjct: 172 ATPWFYTITHENVNSGAMYDPSLKKWHHPTIFSLPTKLIVLPVASAGGLVCFLDIGNRNF 231

Query: 228 YVCNPLTQSFKELPARSVKVWSRVAVGMTLNGNSTSSGYKILWVGCDGEYEIYDSLRNSW 287
           YVCNPL QSFKELPARSVKVWSR+AVGMTLN +S S GYKILWV CDGEYE+YDS+ NSW
Sbjct: 232 YVCNPLNQSFKELPARSVKVWSRIAVGMTLNRSSASGGYKILWVVCDGEYEVYDSVTNSW 291

Query: 288 TRPGSMPSNIKLPVSLNFRSQAVSVDGILYFMRSDPEGIVSYNMVTGVWKQFIIPTPLHL 347
           TRPG MPS +KLP+SLNFRSQAVS+DG LYFMRSDPEGIVSY+M TG+WKQFIIPTPLHL
Sbjct: 292 TRPGIMPSGVKLPLSLNFRSQAVSIDGTLYFMRSDPEGIVSYDMATGIWKQFIIPTPLHL 351

Query: 348 NDHTLAECGGRIMLVGLLTKNAATCVCIWELQKMTLLWKEVDRMPNIWCLDFYGKHVRMT 407
            DHTLAECGGRIMLVGLL+KNA TCVCIWELQKMTLLWKEVDRMPNIWCL+FYGKHVRMT
Sbjct: 352 TDHTLAECGGRIMLVGLLSKNAVTCVCIWELQKMTLLWKEVDRMPNIWCLEFYGKHVRMT 411

Query: 408 CLGNKGLLMLSLRSRQMNRLVTYNVMSREWLKVPGCVVPRGRKRQWIACGTAFHPCLMAT 467
           CLGNKGLLMLSLRSRQM RLVTYNV SREWLKVPGCVVPRG+KRQWIACGTAF+P L A 
Sbjct: 412 CLGNKGLLMLSLRSRQMTRLVTYNVSSREWLKVPGCVVPRGKKRQWIACGTAFYPSLTAV 471

Query: 468 A 468
           A
Sbjct: 472 A 472

Source: Malus x domestica

Species: Malus x domestica

Genus: Malus

Family: Rosaceae

Order: Rosales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|255547692|ref|XP_002514903.1| conserved hypothetical protein [Ricinus communis] gi|223545954|gb|EEF47457.1| conserved hypothetical protein [Ricinus communis]

 Score =  774 bits (1999), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 381/472 (80%), Positives = 417/472 (88%), Gaps = 11/472 (2%)

Query: 3   ELAMLRQLIGQLQQFLQLYGSFPP------HNTDSCFLYFHSHQHQQLPEEQTHQLHRWC 56
           ELAMLRQLIGQL   L LYGS PP      H     FL   +H H  +        +RWC
Sbjct: 4   ELAMLRQLIGQLHDLLNLYGSPPPPLPPPFHLRHQPFLELRNHHHHHVDNR-----NRWC 58

Query: 57  LPEVDDGAADDYYGFVMAAGKSGSCKMLEPVKPPPSKRSRKERNRGKLAGSTSTAEAMEQ 116
           + +++DG+ADDY   VMAAGKSG CKMLEP KPPPSK+S+KERNRGKL G+T+T E ME+
Sbjct: 59  VLDINDGSADDYCDLVMAAGKSGRCKMLEPSKPPPSKKSKKERNRGKLLGTTNTTEVMEE 118

Query: 117 EIWKEFPEDLYEAVIARLPIATFFRFRSVCQKWNSLLKSHSFSQHCAQVPQGIPWFYTIT 176
           EIWK+FPEDL+EAVIARLPIATFFRFR+VC+KWNSLL S SFSQHC +V Q  PWFYTIT
Sbjct: 119 EIWKDFPEDLFEAVIARLPIATFFRFRTVCRKWNSLLSSESFSQHCTKVLQANPWFYTIT 178

Query: 177 HENVNSGAMYDPSLKKWHHPTISSLPTKMIILPVASAGGLVCFLDIGHRNFYVCNPLTQS 236
           HENVNSGA+YDPSLKKWHHPTISSLPTKMI+LPVASAGGLVCF+DIGHRNFYVCNPLTQS
Sbjct: 179 HENVNSGAIYDPSLKKWHHPTISSLPTKMIVLPVASAGGLVCFIDIGHRNFYVCNPLTQS 238

Query: 237 FKELPARSVKVWSRVAVGMTLNGNSTSSGYKILWVGCDGEYEIYDSLRNSWTRPGSMPSN 296
           FKELPARSVKVWSR+AVGMTLNG++TS GYKILWV CDGEYE+YDSL+NSW RPGSMP+N
Sbjct: 239 FKELPARSVKVWSRIAVGMTLNGSATSGGYKILWVCCDGEYEVYDSLKNSWIRPGSMPAN 298

Query: 297 IKLPVSLNFRSQAVSVDGILYFMRSDPEGIVSYNMVTGVWKQFIIPTPLHLNDHTLAECG 356
           IKLP+ LNFRSQAVS+D  +YFMRSDPEGIVSYNMVTGVW+QFIIP PLHL+DHTLAE G
Sbjct: 299 IKLPLLLNFRSQAVSIDATVYFMRSDPEGIVSYNMVTGVWRQFIIPAPLHLSDHTLAEYG 358

Query: 357 GRIMLVGLLTKNAATCVCIWELQKMTLLWKEVDRMPNIWCLDFYGKHVRMTCLGNKGLLM 416
           GRIMLVGLL+KNAATCVCIWELQKMTLLWKEVDRMPNIWCL+FYGKHVRMTCLGNKGLLM
Sbjct: 359 GRIMLVGLLSKNAATCVCIWELQKMTLLWKEVDRMPNIWCLEFYGKHVRMTCLGNKGLLM 418

Query: 417 LSLRSRQMNRLVTYNVMSREWLKVPGCVVPRGRKRQWIACGTAFHPCLMATA 468
           LSLRSRQMNRLVTYNV SREWLKVPGC+VPRGRKRQWIACGTAF+PCL ATA
Sbjct: 419 LSLRSRQMNRLVTYNVKSREWLKVPGCLVPRGRKRQWIACGTAFYPCLTATA 470

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|225425400|ref|XP_002271194.1| PREDICTED: F-box only protein 6-like [Vitis vinifera]

 Score =  768 bits (1982), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 370/472 (78%), Positives = 410/472 (86%), Gaps = 16/472 (3%)

Query: 1   MGELAMLRQLIGQLQQFLQLYGS--FPPHNTDSCFLYFHSHQHQQLPEEQTHQLHRWCLP 58
           M  LAMLRQLIG++Q+  +LYGS  + PH   +  LY H HQH           HRWC  
Sbjct: 63  MEGLAMLRQLIGEVQELCELYGSSNYIPHQPHTQLLYHH-HQHS----------HRWCFS 111

Query: 59  EVDDGAA-DDYYGFVMAAGKSGSCKMLEPVKPPPSKRSRKERNRGKLAGSTSTAEAMEQE 117
             DD +A DDY   +M +GKSG+ K +E  +PPP+K+SRKERNRGKL G+T++AE MEQE
Sbjct: 112 NFDDDSAEDDYCDPIMRSGKSGTLKTMETYEPPPTKKSRKERNRGKLPGTTNSAEVMEQE 171

Query: 118 IWKEFPEDLYEAVIARLPIATFFRFRSVCQKWNSLLKSHSFSQHCAQVPQGIPWFYTITH 177
           IWKEFPEDL+EAVIARLPIATFFRFR VC+KWNSLL S+SFSQHCAQVPQG PWFYTITH
Sbjct: 172 IWKEFPEDLFEAVIARLPIATFFRFRLVCRKWNSLLNSNSFSQHCAQVPQGHPWFYTITH 231

Query: 178 ENVNSGAMYDPSLKKWHHPTISSLPTKMIILPVASAGGLVCFLDIGHRNFYVCNPLTQSF 237
           ENV+ GAMYDPSLKKWHHPTI SL  K  +LPVASAGGLVCFLDI HRNF+VCNPLTQSF
Sbjct: 232 ENVDPGAMYDPSLKKWHHPTIPSLRAK-TVLPVASAGGLVCFLDINHRNFFVCNPLTQSF 290

Query: 238 KELPARSVKVWSRVAVGMTLNGNSTSSGYKILWVGCDGEYEIYDSLRNSWTRPGSMPSNI 297
           KELPARSV+VWSRVAVGMTLNGNST++GYKILWVGCDGEYE+YDS++NSW RPGSMP ++
Sbjct: 291 KELPARSVRVWSRVAVGMTLNGNSTTAGYKILWVGCDGEYEVYDSVKNSWARPGSMPLHV 350

Query: 298 KLPVSLNFRSQAVSVDGILYFMRSDPEGIVSYNMVTGVWKQFIIPTPLHLNDHTLAECGG 357
           KLP+SLNF SQAVS+DG +Y MRSDP+GIVSY+MVTG WKQFIIP PLHL DHTLAECGG
Sbjct: 351 KLPLSLNFLSQAVSIDGTIYLMRSDPDGIVSYDMVTGAWKQFIIPAPLHLTDHTLAECGG 410

Query: 358 RIMLVGLLTKNAATCVCIWELQKMTLLWKEVDRMPNIWCLDFYGKHVRMTCLGNKGLLML 417
           RIMLVGLLTKNAATCVCIWELQKM LLWKEVDRMPNIWCL+FYGKHVRMTCLGNKGLLML
Sbjct: 411 RIMLVGLLTKNAATCVCIWELQKMMLLWKEVDRMPNIWCLEFYGKHVRMTCLGNKGLLML 470

Query: 418 SLRSRQMNRLVTYNVMSREWLKVPGCVVPR-GRKRQWIACGTAFHPCLMATA 468
           SLRSRQMNRLVTYNV+SREWLKVPGCVVPR G+KRQWIACGTAFHPCL A+A
Sbjct: 471 SLRSRQMNRLVTYNVLSREWLKVPGCVVPRGGKKRQWIACGTAFHPCLTASA 522

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224053501|ref|XP_002297845.1| f-box family protein [Populus trichocarpa] gi|222845103|gb|EEE82650.1| f-box family protein [Populus trichocarpa]

 Score =  754 bits (1948), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 379/478 (79%), Positives = 407/478 (85%), Gaps = 12/478 (2%)

Query: 3   ELAMLRQLIGQLQQFLQLYGS-FPPHNTDSCFLYFHSHQHQQ-----------LPEEQTH 50
           ELAMLRQ IGQLQ  L LYGS  PP ++   F + +  Q              L    + 
Sbjct: 4   ELAMLRQFIGQLQDLLNLYGSPLPPFDSLQPFHFHNHQQQNHNNGNNNRIFFFLLLAAST 63

Query: 51  QLHRWCLPEVDDGAADDYYGFVMAAGKSGSCKMLEPVKPPPSKRSRKERNRGKLAGSTST 110
            ++RWC   +DDG+ADDY   VMAAGKSGS KMLEP KPPPSK+ RKERNRGK  G+TS+
Sbjct: 64  LIYRWCFLNLDDGSADDYCSLVMAAGKSGSFKMLEPCKPPPSKKPRKERNRGKSLGTTSS 123

Query: 111 AEAMEQEIWKEFPEDLYEAVIARLPIATFFRFRSVCQKWNSLLKSHSFSQHCAQVPQGIP 170
            E M+QEIWKEFPEDL+EAVIARLPI TFFRFRSVC+KWNS L S SFSQHCAQVPQ  P
Sbjct: 124 TEVMQQEIWKEFPEDLFEAVIARLPITTFFRFRSVCRKWNSFLDSQSFSQHCAQVPQSNP 183

Query: 171 WFYTITHENVNSGAMYDPSLKKWHHPTISSLPTKMIILPVASAGGLVCFLDIGHRNFYVC 230
           WFYTI HENVNSGAMYDPSLKKWHHPTIS LPTK I+LPVASAGGLVCFLDIGHRNFYVC
Sbjct: 184 WFYTIAHENVNSGAMYDPSLKKWHHPTISYLPTKTIVLPVASAGGLVCFLDIGHRNFYVC 243

Query: 231 NPLTQSFKELPARSVKVWSRVAVGMTLNGNSTSSGYKILWVGCDGEYEIYDSLRNSWTRP 290
           NPLTQSFKELP RSVKVWSRVAVGMTLN N+ S GYKILWV CDGE+E+YDSL+NSWTRP
Sbjct: 244 NPLTQSFKELPPRSVKVWSRVAVGMTLNSNAASGGYKILWVCCDGEHEVYDSLKNSWTRP 303

Query: 291 GSMPSNIKLPVSLNFRSQAVSVDGILYFMRSDPEGIVSYNMVTGVWKQFIIPTPLHLNDH 350
           GSMPS IKLP+SLNFRSQAVS+ G LYFMRSDPEGIVSYNMVTGVWKQ IIP P HL+D 
Sbjct: 304 GSMPSCIKLPLSLNFRSQAVSLGGTLYFMRSDPEGIVSYNMVTGVWKQSIIPAPHHLSDR 363

Query: 351 TLAECGGRIMLVGLLTKNAATCVCIWELQKMTLLWKEVDRMPNIWCLDFYGKHVRMTCLG 410
           TLA+C GRI+LVGLLTKNAATCVCIWELQKMTLLWKEVDRMPNIWCLDFYGKHVRMTCLG
Sbjct: 364 TLAQCEGRIILVGLLTKNAATCVCIWELQKMTLLWKEVDRMPNIWCLDFYGKHVRMTCLG 423

Query: 411 NKGLLMLSLRSRQMNRLVTYNVMSREWLKVPGCVVPRGRKRQWIACGTAFHPCLMATA 468
           N GLLMLSLRSRQMNRLVTYNV+SREWLKVPGC+VPRGRKRQWIACGTAF+PCL ATA
Sbjct: 424 NSGLLMLSLRSRQMNRLVTYNVVSREWLKVPGCLVPRGRKRQWIACGTAFNPCLTATA 481

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356540130|ref|XP_003538543.1| PREDICTED: F-box only protein 6-like [Glycine max]

 Score =  739 bits (1909), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 349/469 (74%), Positives = 391/469 (83%), Gaps = 20/469 (4%)

Query: 1   MGELAMLRQLIGQLQQFLQLYGSFPPHNTDSCFLYFHSHQHQQLPEEQTHQLHRWCLP-E 59
           M  LAML+QLI QLQ     Y                 H    L  +Q H   RW    +
Sbjct: 1   MEGLAMLKQLIAQLQHLFDTY-----------------HSQSSLIFQQQHP--RWTTSLD 41

Query: 60  VDDGAADDYYGFVMAAGKSGSCKMLEPVKPPPSKRSRKERNRGKLAGSTSTAEAMEQEIW 119
           ++D + DD+ G VM AGKSGS +M EP KPPP+K+SR++R+RGK +G + T E MEQEIW
Sbjct: 42  IEDNSVDDFCGLVMTAGKSGSFRMSEPGKPPPTKKSRRDRSRGKSSGRSCTTEVMEQEIW 101

Query: 120 KEFPEDLYEAVIARLPIATFFRFRSVCQKWNSLLKSHSFSQHCAQVPQGIPWFYTITHEN 179
           K+FPEDL+EAVIARLPI+TFFRFRSVC++WNS+L S SFSQHC QV Q  PWFYTITHEN
Sbjct: 102 KDFPEDLFEAVIARLPISTFFRFRSVCRQWNSMLNSQSFSQHCTQVTQENPWFYTITHEN 161

Query: 180 VNSGAMYDPSLKKWHHPTISSLPTKMIILPVASAGGLVCFLDIGHRNFYVCNPLTQSFKE 239
           VNSGAMYDPSLKKWHHPTIS+ PTK+I+LPVAS+GGLVCFLDIGHRNF+VCNPLTQSFKE
Sbjct: 162 VNSGAMYDPSLKKWHHPTISTPPTKLIVLPVASSGGLVCFLDIGHRNFFVCNPLTQSFKE 221

Query: 240 LPARSVKVWSRVAVGMTLNGNSTSSGYKILWVGCDGEYEIYDSLRNSWTRPGSMPSNIKL 299
           LPARSVKVWSRVAVGM  NGN   SGYKI+WVGCDGEYE+YDS+RNSW+RPG+MP  +KL
Sbjct: 222 LPARSVKVWSRVAVGMMANGNFAGSGYKIVWVGCDGEYEVYDSVRNSWSRPGNMPVGMKL 281

Query: 300 PVSLNFRSQAVSVDGILYFMRSDPEGIVSYNMVTGVWKQFIIPTPLHLNDHTLAECGGRI 359
           P+SLNFRSQAVS+   LYFMRSDP+GIVSY+M TGVWKQ+IIP PLHL DHTLAEC G++
Sbjct: 282 PLSLNFRSQAVSIGSTLYFMRSDPDGIVSYDMATGVWKQYIIPAPLHLTDHTLAECDGQV 341

Query: 360 MLVGLLTKNAATCVCIWELQKMTLLWKEVDRMPNIWCLDFYGKHVRMTCLGNKGLLMLSL 419
           MLVGLLTKNAATCVCIWELQKMTLLWKEVDRMPNIWCLDFYGKHVRMTCLGNKGLLMLSL
Sbjct: 342 MLVGLLTKNAATCVCIWELQKMTLLWKEVDRMPNIWCLDFYGKHVRMTCLGNKGLLMLSL 401

Query: 420 RSRQMNRLVTYNVMSREWLKVPGCVVPRGRKRQWIACGTAFHPCLMATA 468
           RS+QMNRLVTYN+  +EWLKVPGCVVPRGRKRQWIACGTAFHPCL A  
Sbjct: 402 RSKQMNRLVTYNIAKKEWLKVPGCVVPRGRKRQWIACGTAFHPCLTAVV 450

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356565896|ref|XP_003551172.1| PREDICTED: F-box only protein 6-like [Glycine max]

 Score =  732 bits (1889), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 339/420 (80%), Positives = 375/420 (89%), Gaps = 1/420 (0%)

Query: 50  HQLHRWCLP-EVDDGAADDYYGFVMAAGKSGSCKMLEPVKPPPSKRSRKERNRGKLAGST 108
            Q  RW    +++D + DD  G VM A KSGS +M +PVKPPPSK+SR++R+RGK +G +
Sbjct: 43  QQHPRWTTSLDIEDSSVDDLCGLVMTARKSGSFRMSDPVKPPPSKKSRRDRSRGKSSGRS 102

Query: 109 STAEAMEQEIWKEFPEDLYEAVIARLPIATFFRFRSVCQKWNSLLKSHSFSQHCAQVPQG 168
            T E MEQEIWK+FPEDL+EAVIARLPIATFFRFRSVC++WNS+L S SFS HC QV Q 
Sbjct: 103 CTTEVMEQEIWKDFPEDLFEAVIARLPIATFFRFRSVCRQWNSMLTSQSFSLHCTQVTQE 162

Query: 169 IPWFYTITHENVNSGAMYDPSLKKWHHPTISSLPTKMIILPVASAGGLVCFLDIGHRNFY 228
            PWFYTITHENVNSGAMYDPSLKKWHHPTIS+ PTK+I+LPVASAGGLVCFLDIGHRNF+
Sbjct: 163 SPWFYTITHENVNSGAMYDPSLKKWHHPTISTPPTKLIVLPVASAGGLVCFLDIGHRNFF 222

Query: 229 VCNPLTQSFKELPARSVKVWSRVAVGMTLNGNSTSSGYKILWVGCDGEYEIYDSLRNSWT 288
           VCNPLTQSFKELP RSVKVWSRVAVGMT NGNS  SGYKILWVGCDGEYE+YDS+RNSW+
Sbjct: 223 VCNPLTQSFKELPVRSVKVWSRVAVGMTTNGNSVGSGYKILWVGCDGEYEVYDSVRNSWS 282

Query: 289 RPGSMPSNIKLPVSLNFRSQAVSVDGILYFMRSDPEGIVSYNMVTGVWKQFIIPTPLHLN 348
           RPG+MP+ +KLP+S+NFRSQAVS+   LYFMRSDPEGIVSY+M TGVWKQ+IIP PLHL 
Sbjct: 283 RPGNMPAGMKLPLSINFRSQAVSIGSTLYFMRSDPEGIVSYDMATGVWKQYIIPAPLHLT 342

Query: 349 DHTLAECGGRIMLVGLLTKNAATCVCIWELQKMTLLWKEVDRMPNIWCLDFYGKHVRMTC 408
           DHTLAEC G+IMLVGLLTKNAATCVCIWELQKMTLLWKEVDRMPNIWCLDFYGKHVRMTC
Sbjct: 343 DHTLAECDGQIMLVGLLTKNAATCVCIWELQKMTLLWKEVDRMPNIWCLDFYGKHVRMTC 402

Query: 409 LGNKGLLMLSLRSRQMNRLVTYNVMSREWLKVPGCVVPRGRKRQWIACGTAFHPCLMATA 468
           LGNKGLLMLSLRS+QMNRLVTYN+  +EWLKVPGCVVPRGRKRQWIACGTAFHPCL A A
Sbjct: 403 LGNKGLLMLSLRSKQMNRLVTYNIAKKEWLKVPGCVVPRGRKRQWIACGTAFHPCLTAVA 462

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|449445668|ref|XP_004140594.1| PREDICTED: F-box only protein 6-like [Cucumis sativus] gi|449521786|ref|XP_004167910.1| PREDICTED: F-box only protein 6-like [Cucumis sativus]

 Score =  732 bits (1889), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 352/468 (75%), Positives = 387/468 (82%), Gaps = 5/468 (1%)

Query: 1   MGELAMLRQLIGQLQQFLQLYGSFPPHNTDSCFLYFHSHQHQQLPEEQTHQLHRWCLPEV 60
           M  LAMLRQLIGQLQ+FLQ Y S   H              QQL         RWC  ++
Sbjct: 1   MEGLAMLRQLIGQLQEFLQFYHS---HPPPPPPPPPPPQPAQQLALTLASSHQRWCFKDI 57

Query: 61  DDGAADDYYGFVMAAGKSGSCKMLEPVKPPPSKRSRKERNRGKLAGSTSTAEAMEQEIWK 120
           DD + DDYYG V+ AG+S +CKM E    PP K+ RKERNRGKL GS +T E ME+EIWK
Sbjct: 58  DDNSTDDYYGLVLVAGRSDNCKMTETCMLPPLKKPRKERNRGKLLGSAATTEVMEEEIWK 117

Query: 121 EFPEDLYEAVIARLPIATFFRFRSVCQKWNSLLKSHSFSQHCAQVPQGIPWFYTITHENV 180
           +FPEDL+EAVIARLPIATFFRFR+VCQKWNSLL S SFS +CAQVPQ IPWFYTITH+ V
Sbjct: 118 DFPEDLFEAVIARLPIATFFRFRAVCQKWNSLLNSESFSFYCAQVPQTIPWFYTITHDMV 177

Query: 181 NSGAMYDPSLKKWHHPTISSLPTKMIILPVASAGGLVCFLDIGHRNFYVCNPLTQSFKEL 240
           +SGA+YDPSLKKWHHP+ISS P K ++LPVASAGGLVC LD  HRNFYVCNPLTQS KEL
Sbjct: 178 SSGAIYDPSLKKWHHPSISSQPIKSLVLPVASAGGLVCLLDFSHRNFYVCNPLTQSLKEL 237

Query: 241 PARSVKVWSRVAVGMTLNGNSTSSGYKILWVGCDGEYEIYDSLRNSWTRPGSMPSNIKLP 300
           PARSV+VWSRVAVGMTLNG+STS GY IL +GCDGEYEIYDS++NSW  PGSMPS+IKLP
Sbjct: 238 PARSVEVWSRVAVGMTLNGSSTSWGYNILCLGCDGEYEIYDSVKNSWIHPGSMPSSIKLP 297

Query: 301 VSLNFRSQAVSVDGILYFMRSDPEGIVSYNMVTGVWKQFIIPTPLHLNDHTLAECGGRIM 360
           +SLNFRSQAVS+D  LYFMRSDPEGIVS+NMVTGVWKQFI+PTPLHL DHTLAE GGRIM
Sbjct: 298 LSLNFRSQAVSIDSTLYFMRSDPEGIVSFNMVTGVWKQFIVPTPLHLTDHTLAEYGGRIM 357

Query: 361 LVGLLTKNAATCVCIWELQKMTLLWKEVDRMPNIWCLDFYGKHVRMTCLGNKGLLMLSLR 420
           LVGLLTKNAATCVCIWELQKMTLLWKEVDRMPNIWCL+FYGKHV M CLGNKGLLMLSLR
Sbjct: 358 LVGLLTKNAATCVCIWELQKMTLLWKEVDRMPNIWCLEFYGKHVSMNCLGNKGLLMLSLR 417

Query: 421 SRQMNRLVTYNVMSREWLKVPGCVVPRGRKRQWIACGTAFHPCLMATA 468
           SRQ NRLVTY++ S+EW KVPG  VPRGRKRQWI  GTAF+PC  A A
Sbjct: 418 SRQTNRLVTYDLTSKEWSKVPG--VPRGRKRQWITSGTAFYPCPTAVA 463

Source: Cucumis sativus

Species: Cucumis sativus

Genus: Cucumis

Family: Cucurbitaceae

Order: Cucurbitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|255646553|gb|ACU23751.1| unknown [Glycine max]

 Score =  727 bits (1877), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 337/420 (80%), Positives = 373/420 (88%), Gaps = 1/420 (0%)

Query: 50  HQLHRWCLP-EVDDGAADDYYGFVMAAGKSGSCKMLEPVKPPPSKRSRKERNRGKLAGST 108
            Q  RW    +++D + DD  G VM A KSGS +M +PVKPPPSK+SR++R+RGK +G +
Sbjct: 43  QQHPRWTTSLDIEDSSVDDLCGLVMTARKSGSFRMSDPVKPPPSKKSRRDRSRGKSSGRS 102

Query: 109 STAEAMEQEIWKEFPEDLYEAVIARLPIATFFRFRSVCQKWNSLLKSHSFSQHCAQVPQG 168
            T E MEQEIWK+FPEDL+EAVIARLPIATFFRFRSVC++WNS+L S SFS HC QV Q 
Sbjct: 103 CTTEVMEQEIWKDFPEDLFEAVIARLPIATFFRFRSVCRQWNSMLTSQSFSLHCTQVTQE 162

Query: 169 IPWFYTITHENVNSGAMYDPSLKKWHHPTISSLPTKMIILPVASAGGLVCFLDIGHRNFY 228
            PWFYTITHENVNSGAMYDPSLKKWHHPTIS+ PTK+I+LPVASAGGLVCFLDIGHRNF+
Sbjct: 163 SPWFYTITHENVNSGAMYDPSLKKWHHPTISTPPTKLIVLPVASAGGLVCFLDIGHRNFF 222

Query: 229 VCNPLTQSFKELPARSVKVWSRVAVGMTLNGNSTSSGYKILWVGCDGEYEIYDSLRNSWT 288
           VCNPLTQSFKELP RSVKVWSRVAVGMT NGNS  SGYKILWVGCDGEYE+YDS+RNSW+
Sbjct: 223 VCNPLTQSFKELPVRSVKVWSRVAVGMTTNGNSVGSGYKILWVGCDGEYEVYDSVRNSWS 282

Query: 289 RPGSMPSNIKLPVSLNFRSQAVSVDGILYFMRSDPEGIVSYNMVTGVWKQFIIPTPLHLN 348
           RPG+MP+ +KLP+S+NFR QAVS+   LYFMRSDPEGIVSY+M TGVWKQ+IIP PLHL 
Sbjct: 283 RPGNMPAGMKLPLSINFRPQAVSIGSTLYFMRSDPEGIVSYDMATGVWKQYIIPAPLHLT 342

Query: 349 DHTLAECGGRIMLVGLLTKNAATCVCIWELQKMTLLWKEVDRMPNIWCLDFYGKHVRMTC 408
           DHTLAEC G+IMLVGLLTKNAATCVCIW LQKMTLLWKEVDRMPNIWCLDFYGKHVRMTC
Sbjct: 343 DHTLAECDGQIMLVGLLTKNAATCVCIWALQKMTLLWKEVDRMPNIWCLDFYGKHVRMTC 402

Query: 409 LGNKGLLMLSLRSRQMNRLVTYNVMSREWLKVPGCVVPRGRKRQWIACGTAFHPCLMATA 468
           LGNKGLLMLSLRS+QMNRLVTYN+  +EWLKVPGCVVPRGRKRQWIACGTAFHPCL A A
Sbjct: 403 LGNKGLLMLSLRSKQMNRLVTYNIAKKEWLKVPGCVVPRGRKRQWIACGTAFHPCLTAVA 462

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	468
TAIR|locus:2015974	467	LCR "AT1G27340" [Arabidopsis t	0.946	0.948	0.68	2.6e-166
TAIR|locus:2143256	448	AT5G15710 "AT5G15710" [Arabido	0.681	0.712	0.290	3.4e-29
TAIR|locus:2015766	442	UFO "AT1G30950" [Arabidopsis t	0.547	0.579	0.253	8.8e-25
TAIR|locus:2169253	403	AT5G43190 "AT5G43190" [Arabido	0.724	0.841	0.275	2.8e-20
TAIR|locus:2125889	457	AT4G33160 "AT4G33160" [Arabido	0.583	0.597	0.277	5.7e-18
TAIR|locus:2082797	411	HWS "HAWAIIAN SKIRT" [Arabidop	0.245	0.279	0.380	6.7e-17
TAIR|locus:2157834	359	AT5G49610 "AT5G49610" [Arabido	0.566	0.738	0.231	3.4e-10
TAIR|locus:2094453	361	AT3G25460 "AT3G25460" [Arabido	0.405	0.526	0.271	8.2e-08
TAIR|locus:2162286	563	AT5G42350 "AT5G42350" [Arabido	0.153	0.127	0.302	1.3e-07
TAIR|locus:2162301	563	AT5G42360 "AT5G42360" [Arabido	0.153	0.127	0.302	1.3e-07

TAIR|locus:2015974 LCR "AT1G27340" [Arabidopsis thaliana (taxid:3702)]

 Score = 1618 (574.6 bits), Expect = 2.6e-166, P = 2.6e-166
 Identities = 306/450 (68%), Positives = 357/450 (79%)

Query:    22 GSFPPHNTDSCFLYFHSHQHQQLPEEQTHQLHRWCLPEVDDGAADDYYGFVMAAGKS-GS 80
             GS PP ++ S  L   S     L   Q +Q + WCLP ++D +ADD    VMA GK  G 
Sbjct:    22 GSPPPPSSSSS-LSSSSPSFLVLHHPQ-YQ-NGWCLPCIEDTSADDCCDIVMAGGKRPGI 78

Query:    81 CKMLEPVXXXXXXXXXXERNRGKLAGSTSTAEA-MEQEIWKEFPEDLYEAVIARLPIATF 139
              KMLE V          ER +GK           M+QEIW+EFP+DL+E V++RLP+ATF
Sbjct:    79 FKMLETVKPPVKRTRK-ERTQGKSCTEVDEISGNMDQEIWQEFPQDLFEDVVSRLPMATF 137

Query:   140 FRFRSVCQKWNSLLKSHSFSQHCAQVPQGIPWFYTITHENVNSGAMYDPSLKKWHHPTIS 199
             F+FR+VC+KWN+L+ S SFS+   ++PQ IPWFYTITHENVNSG +YDPSLKKWHHP I 
Sbjct:   138 FQFRAVCRKWNALIDSDSFSRCFTELPQTIPWFYTITHENVNSGQVYDPSLKKWHHPIIP 197

Query:   200 SLPTKMIILPVASAGGLVCFLDIGHRNFYVCNPLTQSFKELPARSVKVWSRVAVGMTLNG 259
             +LP K I+LP+ASAGGLVCFLDIGHRNFYV NPLT+SF+ELPARS KVWSRVAVGMTLNG
Sbjct:   198 ALPKKSIVLPMASAGGLVCFLDIGHRNFYVSNPLTKSFRELPARSFKVWSRVAVGMTLNG 257

Query:   260 NSTSSGYKILWVGCDGEYEIYDSLRNSWTRPGSMPSNIKLPVSLNFRSQAVSVDGILYFM 319
             NSTS GYK+LWVGC+GEYE+YDSL N WT+ G++PSNIKLPV LNF+SQ V++   LYFM
Sbjct:   258 NSTSHGYKVLWVGCEGEYEVYDSLSNVWTKRGTIPSNIKLPVLLNFKSQPVAIHSTLYFM 317

Query:   320 RSDPEGIVSYNMVTGVWKQFIIPTPLHLNDHTLAECGGRIMLVGLLTKNAATCVCIWELQ 379
              +DPEGI+SY+MV+G WKQFIIP P  L+DHTLA CG R+MLVGLLTKNAATCVCIWELQ
Sbjct:   318 LTDPEGILSYDMVSGKWKQFIIPGPPDLSDHTLAACGERLMLVGLLTKNAATCVCIWELQ 377

Query:   380 KMTLLWKEVDRMPNIWCLDFYGKHVRMTCLGNKG-LLMLSLRSRQMNRLVTYNVMSREWL 438
             KMTLLWKEVDRMPNIWCL+FYGKH+RM CLGNKG L++LSLRSRQMNRL+TYN ++REW 
Sbjct:   378 KMTLLWKEVDRMPNIWCLEFYGKHIRMNCLGNKGCLILLSLRSRQMNRLITYNAVTREWT 437

Query:   439 KVPGCVVPRGRKRQWIACGTAFHPCLMATA 468
             KVPGC VPRGRKR WIACGTAFHP   A A
Sbjct:   438 KVPGCTVPRGRKRLWIACGTAFHPSPTARA 467

GO:0003674 "molecular_function" evidence=ND

GO:0005634 "nucleus" evidence=ISM

GO:0010305 "leaf vascular tissue pattern formation" evidence=IMP

GO:0010928 "regulation of auxin mediated signaling pathway" evidence=IMP

GO:0060776 "simple leaf morphogenesis" evidence=IMP

TAIR|locus:2143256 AT5G15710 "AT5G15710" [Arabidopsis thaliana (taxid:3702)]

 Score = 324 (119.1 bits), Expect = 3.4e-29, P = 3.4e-29
 Identities = 100/344 (29%), Positives = 157/344 (45%)

Query:   114 MEQEIWKEFPEDLYEAVIARLPIATFFRFRSVCQKWNSLLKSHSFSQHCAQVPQGIPWFY 173
             ME  IW   PEDL   ++AR+P    FR RSVC+KWN +L+ +SF +  + V    P   
Sbjct:    99 MEDGIWAMLPEDLLNEILARVPPFMIFRIRSVCKKWNLILQDNSFLKFHSNVSSHGPCLL 158

Query:   174 TITHEN--VNSGAMYDPSLKKWHHPTISSLPTKMIILPVASAGGLVCFLDIGHRNF--YV 229
             T    +  +   +++   LK W+    + LP     L V S+GGLVCF  +    F   V
Sbjct:   159 TFWKNSPQIPQCSVFSLPLKTWYKIPFTFLPPWAFWL-VGSSGGLVCFSGLDGLTFRTLV 217

Query:   230 CNPLTQSFKELPARSVKVWSRVAVGMTLNGNSTSSGYKILWVG-CDGEY----EIYDSLR 284
             CNPL QS++ LP+       ++   M ++ +  S  +K++      G+     E+YDS  
Sbjct:   218 CNPLMQSWRTLPSMHYNQQRQLI--MVVDRSDKS--FKVIATSDIYGDKSLPTEVYDSKT 273

Query:   285 NSWTRPGSMPSNIKLPVSLNFRSQAVSVDGILYFMRSDPEGIVSYNMVTGVWKQFIIPTP 344
             + W+    MP+     V+L   S+    D  LY     P G++ Y + +G W+      P
Sbjct:   274 DKWSLHQIMPA-----VNL-CSSKMAYCDSRLYLETLSPLGLMMYRLDSGQWEHIPAKFP 327

Query:   345 LHLND-HTLAECGGRIMLVGLL-TKNAATCVCIWELQKMTLLWKEVDRMPNIWCLDFYGK 402
               L D + +A    R+ LVG +   +    + IWEL    + W E+ RMP  +       
Sbjct:   328 RSLLDGYLVAGTQKRLFLVGRIGLYSTLQSMRIWELDHTKVSWVEISRMPPKYFRALLRL 387

Query:   403 HV-RMTCLGNKGLLMLSLRSRQMNRLVTYNVMSREWLKVPGCVV 445
                R  C G   L+  +  S    + + YNV  + W  + GC +
Sbjct:   388 SAERFECFGQDNLICFT--SWNQGKGLLYNVDKKIWSWISGCAL 429

GO:0003674 "molecular_function" evidence=ND

GO:0005634 "nucleus" evidence=ISM

GO:0008150 "biological_process" evidence=ND

TAIR|locus:2015766 UFO "AT1G30950" [Arabidopsis thaliana (taxid:3702)]

 Score = 237 (88.5 bits), Expect = 8.8e-25, Sum P(2) = 8.8e-25
 Identities = 71/280 (25%), Positives = 128/280 (45%)

Query:   179 NVNSGAMYDPSLKKWHHPTISSLPTKMIILPVASAGGLVCFL--DIGHRNFYVCNPLTQS 236
             N   G ++DP+  +W+  + + +P+     P  S+GGLV ++  + G +   +CNPL  S
Sbjct:   125 NKAEGFLFDPNEIRWYRLSFAYIPSGFY--PSGSSGGLVSWVSEEAGLKTILLCNPLVGS 182

Query:   237 FKELPARS-VKVWSRV-------AVGMTLNGNSTSSGYKILWVGCDGEYEIYDSLRNSWT 288
               +LP  S  +++  +       ++ +T+ G+   S Y +  +  +  +       + W 
Sbjct:   183 VSQLPPISRPRLFPSIGLSVTPTSIDVTVAGDDLISPYAVKNLSSESFHVDAGGFFSLWA 242

Query:   289 RPGSMPSNIKLPVSLNFRSQAVSVDGILYFMRSDPEGIVSYNMVTGVWKQFIIPTPLHLN 348
                S+P   +L  SL    + V V G  Y M   P  ++SY +    W +   P    L 
Sbjct:   243 MTSSLP---RL-CSLE-SGKMVYVQGKFYCMNYSPFSVLSYEVTGNRWIKIQAPMRRFLR 297

Query:   349 DHTLAECGGRIMLVGLLTK---NAATCVCIWELQKMTLLWKEVDRMPNIWCLDFYGKH-- 403
               +L E  GR++LV  + K   N    + +W LQ+    W E++RMP      F  +   
Sbjct:   298 SPSLLESKGRLILVAAVEKSKLNVPKSLRLWSLQQDNATWVEIERMPQPLYTQFAAEEGG 357

Query:   404 VRMTCLGNKGLLMLSLRSRQMNRLVTYNVMSREWLKVPGC 443
                 C+GN+  +M+ LR   +  L  ++++ + WL VP C
Sbjct:   358 KGFECVGNQEFVMIVLRGTSLQLL--FDIVRKSWLWVPPC 395

GO:0004842 "ubiquitin-protein ligase activity" evidence=ISS;IMP

GO:0005634 "nucleus" evidence=ISM

GO:0000151 "ubiquitin ligase complex" evidence=IPI

GO:0005515 "protein binding" evidence=IPI

GO:0006511 "ubiquitin-dependent protein catabolic process" evidence=RCA;TAS

GO:0031146 "SCF-dependent proteasomal ubiquitin-dependent protein catabolic process" evidence=IGI

GO:0006355 "regulation of transcription, DNA-dependent" evidence=IDA

GO:0008134 "transcription factor binding" evidence=IPI

GO:0042752 "regulation of circadian rhythm" evidence=RCA

TAIR|locus:2169253 AT5G43190 "AT5G43190" [Arabidopsis thaliana (taxid:3702)]

 Score = 260 (96.6 bits), Expect = 2.8e-20, P = 2.8e-20
 Identities = 106/385 (27%), Positives = 174/385 (45%)

Query:   109 STAEAMEQEIWKEFPEDLYEAVIARLPIATFFRFRSVCQKWNSLLKSHSF-SQHCAQVPQ 167
             S+   ++  IW   P  L E +++ LP  T    RS+ +   SL+ S SF S H   +P 
Sbjct:    38 SSPTNLDPNIWSNLPNHLLEHILSLLPFKTLLTLRSISRHLRSLILSPSFISDHSFSLPS 97

Query:   168 GIPWFYTITH-ENVNSGAMYDPSLKKWHH-PTISSLPTKMIILPVASAGGLVCF-LDIGH 224
                 F  ++H ++ NS  +++P+L  W   P   SL        ++S+ GL+CF L    
Sbjct:    98 ----FLLLSHPQSFNSFPLFNPNLISWCTLPLPRSLSLTCASSLLSSSNGLLCFSLSPSS 153

Query:   225 -RNFYVCNPLTQSFKELPARSVKVWSRVAVGMTLNGNSTSSGYKILWVGCDGEYE----- 278
               +  + NPLT+S     +RS+K+         L+  ++  GYKI  + C          
Sbjct:   154 VSSLSIFNPLTRS-----SRSIKLPCYPFPFELLSLVTSPKGYKIFTL-CSSSSAASSRS 207

Query:   279 --IYDSLRNSWTRPGSMPSNIKLPVSLNFRSQAVSVDGILYFMRSDPEGIVSYNMVTGVW 336
               +YDS   SW + G +     LP    F    V  +G LYF RS+P  IVS ++  G W
Sbjct:   208 VCLYDSGDRSWRKFGGVDQ--VLP--RGFNQDGVFYNGSLYFARSEPFLIVSVDLNDGKW 263

Query:   337 KQF----IIPTPLHLNDHTL-AECGGRIM-LVGLLTKNA-ATCVCIWELQKMTLLWKEVD 389
                    + P    +    L ++   +I+ +VG +  N     + IWE ++ T  W EV+
Sbjct:   264 TTATGDGVFPADDEITFARLVSDPEKKILYMVGGIGSNGICRSIKIWEFKEETESWIEVE 323

Query:   390 RMPNIWCLDF----YGKHVRMTCLGNKGLLMLSLRSRQMNRLVTYNVMSREWLKVPGCVV 445
              +P+I C  F    Y  +  + CL +K ++ +   +     ++ ++V  R W  VP C  
Sbjct:   324 TLPDIVCRKFTSVCYHNYEHVYCLWHKEMICVCCYN--WPEILFFHVGRRTWHWVPKC-- 379

Query:   446 PRGRKRQWIACGT---AFHPCLMAT 467
             P     +W +CG    +F P L A+
Sbjct:   380 P-SLPEKW-SCGFRWFSFVPSLSAS 402

GO:0004842 "ubiquitin-protein ligase activity" evidence=ISS

GO:0005634 "nucleus" evidence=ISM

GO:0006511 "ubiquitin-dependent protein catabolic process" evidence=TAS

GO:0006865 "amino acid transport" evidence=RCA

GO:0006869 "lipid transport" evidence=RCA

GO:0015824 "proline transport" evidence=RCA

TAIR|locus:2125889 AT4G33160 "AT4G33160" [Arabidopsis thaliana (taxid:3702)]

 Score = 243 (90.6 bits), Expect = 5.7e-18, P = 5.7e-18
 Identities = 83/299 (27%), Positives = 139/299 (46%)

Query:   100 NRGKLAGSTSTAEAMEQEIW---KEFP-----EDLYEAVIARLPIATFFRFRSVCQKWNS 151
             N G   G   + +  E  +     EFP     +D+ E V++ LP + FFR  SVC++W S
Sbjct:    40 NMGFSTGKRKSRDEEEDRVSFFASEFPMDDLNDDVLERVLSWLPTSCFFRMSSVCKRWKS 99

Query:   152 LLKSHSFSQHCAQVPQGIPWFYTITHENVNSGAMYDPSLKKWHHPTISSL--PTKMIILP 209
                S SF   C+Q+P   PWF+ I +++ +S  ++D +   W +          +   +P
Sbjct:   100 SQTSKSFKLACSQIPTRDPWFFMIDNDSNSSSFVFDSTENSWKNLNRRDFLHHHRQDFIP 159

Query:   210 VASAGGLVCFLDIGHRNFYVCNPLTQSFKELPARSVKVWSRV-AVGMTLNGNSTSSGYKI 268
             VAS+GGL+C+      +F + NPLT S +++P++       + AV MT     T S Y +
Sbjct:   160 VASSGGLLCYRCSISGDFLLRNPLTGSSRDIPSQDNNNNKPLQAVAMTTT-TVTPSSYTL 218

Query:   269 LWVGCDGE-----YEIYDSLRNSWTRPGSMPSNIKLPVSLNFRSQAVSVDGILYFMRSDP 323
             + +   GE     ++IY+S  +SW++   + S      SL+      S  G +YF+    
Sbjct:   219 VTIS--GEIPNLSFKIYESNADSWSKDQELESVKNNDSSLHDDYDTDS--GTVYFLSKQG 274

Query:   324 EGIV-SYNMVTGVWKQFIIPTPLHLNDHTLAECGGRIMLVGLLTKNAATCVCIWELQKM 381
               +V S N+     KQ+   + + + D   AE    +   G +     T  C  EL K+
Sbjct:   275 NVVVASNNLQRSPSKQY--SSVITVTDE--AEIVYFLSSYGTIVACDLTKRCFTELPKL 329

GO:0004842 "ubiquitin-protein ligase activity" evidence=ISS

GO:0005634 "nucleus" evidence=ISM

GO:0006511 "ubiquitin-dependent protein catabolic process" evidence=TAS

TAIR|locus:2082797 HWS "HAWAIIAN SKIRT" [Arabidopsis thaliana (taxid:3702)]

 Score = 210 (79.0 bits), Expect = 6.7e-17, Sum P(2) = 6.7e-17
 Identities = 46/121 (38%), Positives = 72/121 (59%)

Query:   123 PEDLYEAVIARLPIATFFRFRSVCQKWNSLLKSHSFSQHCAQ--VPQGIPWFYTITHENV 180
             P+DL E +++ LPIA+ FR  +VC++WN ++ S  F  + +   V Q  PW++  T  + 
Sbjct:    44 PDDLLERILSFLPIASIFRAGTVCKRWNEIVSSRRFLCNFSNNSVSQR-PWYFMFTTTDD 102

Query:   181 NSGAMYDPSLKKWHHPTISSLPTKMIILPVASAGGLVCFLDIGHRN-FYVCNPLTQSFKE 239
              SG  YDP ++KW+   +  + T      VAS+ GLVCF+D   RN  YV NP+T+ ++ 
Sbjct:   103 PSGYAYDPIIRKWYSFDLPCIETSNWF--VASSCGLVCFMDNDCRNKIYVSNPITKQWRT 160

Query:   240 L 240
             L
Sbjct:   161 L 161

GO:0005634 "nucleus" evidence=ISM

GO:0004842 "ubiquitin-protein ligase activity" evidence=ISS

GO:0048513 "organ development" evidence=IMP

GO:0006869 "lipid transport" evidence=RCA

TAIR|locus:2157834 AT5G49610 "AT5G49610" [Arabidopsis thaliana (taxid:3702)]

 Score = 172 (65.6 bits), Expect = 3.4e-10, P = 3.4e-10
 Identities = 69/298 (23%), Positives = 142/298 (47%)

Query:   122 FPEDLYEAVIARLPIATFFRFRSVCQKWNSLLKSHSFSQHCAQVPQGIPWFYTITHENVN 181
             FP+++   ++ARLP+ + FRF+SVC+ W  L     F+    Q+   +     +   + +
Sbjct:     9 FPDEVILQILARLPVKSLFRFKSVCKSWYRLPSDKYFTSLFNQL--SVKEQLLVAEVSDS 66

Query:   182 SGAMYDPSLKKWHHPTISSLPTKMIILPVASAGGLVCFLDIGHRN-FYVCNPLTQSFKEL 240
             S  +   +L+     ++  +  ++ I    S+ GL+C   I  +  +YVCNP T+ +++L
Sbjct:    67 SSLICVDNLRGVSELSLDFVRDRVRIR--VSSNGLLCCSSIPEKGVYYVCNPSTREYRKL 124

Query:   241 PARSVKVWSR-------VAVGMT--LNGNSTS---SGY-KILWVGCDGEYE--IYDSLRN 285
             P    +  +R         VG+   L+ N  +   +GY +      DG +   ++DS  N
Sbjct:   125 PKSRERPVTRFYPDGEATLVGLACDLSKNKFNVVLAGYHRSFGQRPDGSFICLVFDSESN 184

Query:   286 SWTRPGSMPSNIKLPVSLNFRSQAVSVDGILYFMRSDPEGIVSYNMVTGVWKQFIIPTPL 345
              W +  S+         ++ ++Q V V+G+L+++ S    I++ ++   VW++  +P  +
Sbjct:   185 KWRKFVSVLEECSF-THMS-KNQVVFVNGMLHWLMSGLCYILALDVEHDVWRKISLPDEI 242

Query:   346 HLNDHTLAECGGRIMLV---GLLTKNAATCVC--IWELQKM-TLLWKEVDRMPNIWCL 397
              + +      G R+ L+   G L+    + V   IW++ +  T  W  VD + ++ C+
Sbjct:   243 RIGNGG----GNRVYLLESDGFLSVIQLSDVWMKIWKMSEYETETWSVVDSI-SLRCI 295

GO:0003674 "molecular_function" evidence=ND

GO:0005634 "nucleus" evidence=ISM

GO:0008150 "biological_process" evidence=ND

TAIR|locus:2094453 AT3G25460 "AT3G25460" [Arabidopsis thaliana (taxid:3702)]

 Score = 151 (58.2 bits), Expect = 8.2e-08, P = 8.2e-08
 Identities = 57/210 (27%), Positives = 93/210 (44%)

Query:   121 EFPEDLYEAVIARLPIATFFRFRSVCQKWNSLLKSHSF-SQHCAQVPQG---IPWF-YTI 175
             E PEDL   ++ R+P  +  R RS C+ WN L     F S+HC + P+    + W  +  
Sbjct:     5 ELPEDLLVEILCRVPATSLKRLRSTCKLWNHLYNDKRFKSKHCHKAPRQSLILMWKNFGF 64

Query:   176 THENVN----SGAMYDPSLKKW-HHPTISSLPTKMIILPVASAGGLVCFLDIGHRN--FY 228
             +  ++N    S       L    HH ++          P+    GL+  +++   N    
Sbjct:    65 SSISINLQRVSPIEVTGELNLIDHHSSLGMFRNS----PLCQTSGLLLCVNVEKINTRLV 120

Query:   229 VCNPLTQSFKELPARSVKVWSRVAVGMTLNGNSTSSGYKILWVGCDG--EYEIYDSLRNS 286
             V NP T   K +  R +      A+G   +  S ++ YKIL  G  G  E+EIY+   NS
Sbjct:   121 VWNPCTGKTKWIQHRRMGYICNYALGSYQDKKSDNNSYKILSHGIYGGQEFEIYEINSNS 180

Query:   287 WT-RPGSMPSNIKLP-VSLNFRSQAVSVDG 314
             W     ++ S++ +  VSL  ++   + DG
Sbjct:   181 WRILDVTVDSSLYIENVSLKGKTYWFATDG 210

GO:0003674 "molecular_function" evidence=ND

GO:0005737 "cytoplasm" evidence=ISM

GO:0008150 "biological_process" evidence=ND

TAIR|locus:2162286 AT5G42350 "AT5G42350" [Arabidopsis thaliana (taxid:3702)]

 Score = 109 (43.4 bits), Expect = 1.3e-07, Sum P(2) = 1.3e-07
 Identities = 23/76 (30%), Positives = 36/76 (47%)

Query:   123 PEDLYEAVIARLPIATFFRFRSVCQKWNSLLKSHSFSQHCAQVPQGIPWFYTIT--HENV 180
             P+D+ E  + RLP+ +      VC+KW S+  +  F Q   +     PW +      +  
Sbjct:   136 PDDILEMCLMRLPLTSLLNAHLVCKKWQSMANTQRFLQMRREGSFQTPWLFLFAALKDGC 195

Query:   181 NSGAM--YDPSLKKWH 194
             +SG +  YD S  KWH
Sbjct:   196 SSGDIHGYDVSQDKWH 211

GO:0003674 "molecular_function" evidence=ND

GO:0005575 "cellular_component" evidence=ND

GO:0008150 "biological_process" evidence=ND

TAIR|locus:2162301 AT5G42360 "AT5G42360" [Arabidopsis thaliana (taxid:3702)]

 Score = 109 (43.4 bits), Expect = 1.3e-07, Sum P(2) = 1.3e-07
 Identities = 23/76 (30%), Positives = 36/76 (47%)

Query:   123 PEDLYEAVIARLPIATFFRFRSVCQKWNSLLKSHSFSQHCAQVPQGIPWFYTIT--HENV 180
             P+D+ E  + RLP+ +      VC+KW S+  +  F Q   +     PW +      +  
Sbjct:   136 PDDILEMCLMRLPLTSLLNAHLVCKKWQSMANTQRFLQMRREGSFQTPWLFLFAALKDGC 195

Query:   181 NSGAM--YDPSLKKWH 194
             +SG +  YD S  KWH
Sbjct:   196 SSGDIHGYDVSQDKWH 211

GO:0003674 "molecular_function" evidence=ND

GO:0005634 "nucleus" evidence=ISM

GO:0008150 "biological_process" evidence=ND

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

ID	Name	Annotated EC number	Identity	Query coverage	Hit coverage	RBH(Q2H)	RBH(H2Q)
Q9FZK1	FBX6_ARATH	No assigned EC number	0.68	0.9722	0.9743	yes	no

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Fail to connect to STRING server

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Length	Definition	E-value
Query	468
pfam00646	48	pfam00646, F-box, F-box domain	6e-05
smart00256	41	smart00256, FBOX, A Receptor for Ubiquitination Ta	2e-04
TIGR01640	230	TIGR01640, F_box_assoc_1, F-box protein interactio	2e-04
PLN03215	373	PLN03215, PLN03215, ascorbic acid mannose pathway	0.004

>gnl|CDD|201368 pfam00646, F-box, F-box domain

 Score = 40.3 bits (95), Expect = 6e-05
 Identities = 11/41 (26%), Positives = 19/41 (46%)

Query: 118 IWKEFPEDLYEAVIARLPIATFFRFRSVCQKWNSLLKSHSF 158
              + P+DL   +++RL      R   V ++W SL+ S   
Sbjct: 2   SLLDLPDDLLLEILSRLDPKDLLRLSLVSKRWRSLVDSLKL 42

This domain is approximately 50 amino acids long, and is usually found in the N-terminal half of a variety of proteins. Two motifs that are commonly found associated with the F-box domain are the leucine rich repeats (LRRs; pfam00560 and pfam07723) and the WD repeat (pfam00400). The F-box domain has a role in mediating protein-protein interactions in a variety of contexts, such as polyubiquitination, transcription elongation, centromere binding and translational repression. Length = 48

>gnl|CDD|197608 smart00256, FBOX, A Receptor for Ubiquitination Targets

 Score = 38.6 bits (91), Expect = 2e-04
 Identities = 13/37 (35%), Positives = 22/37 (59%)

Query: 122 FPEDLYEAVIARLPIATFFRFRSVCQKWNSLLKSHSF 158
            P+++ E ++++L      R R V +KW SL+ SH F
Sbjct: 1   LPDEILEEILSKLDPKDLLRLRKVSRKWRSLIDSHDF 37

Length = 41

>gnl|CDD|233502 TIGR01640, F_box_assoc_1, F-box protein interaction domain

 Score = 42.4 bits (100), Expect = 2e-04
 Identities = 36/147 (24%), Positives = 63/147 (42%), Gaps = 20/147 (13%)

Query: 215 GLVCFLDIGHRNFYVCNPLTQSFKELPARSVKVWSRVAVGMTLNGNSTSSGYKILWVGCD 274
           GL+CF         V NP T   + LP    +  ++ +    L  +     YK+L     
Sbjct: 6   GLICFSYGK--RLVVWNPSTGQSRWLPTPKSRRSNKESDTYFLGYDPIEKQYKVLCFSDR 63

Query: 275 G------EYEIYDSLRNSWTRPGSMPSNIKLPVSLNFRSQAVSVDGILY----FMRSDP- 323
                  E+++Y    NSW      P +  L       S+ V ++G+LY     ++++P 
Sbjct: 64  SGNRNQSEHQVYTLGSNSWRTIECSPPHHPLK------SRGVCINGVLYYLAYTLKTNPD 117

Query: 324 EGIVSYNMVTGVWKQFIIPTPLHLNDH 350
             IVS+++ +  +K+F IP P   +D 
Sbjct: 118 YFIVSFDVSSERFKEF-IPLPCGNSDS 143

This model describes a large family of plant domains, with several hundred members in Arabidopsis thaliana. Most examples are found C-terminal to an F-box (pfam00646), a 60 amino acid motif involved in ubiquitination of target proteins to mark them for degradation. Two-hybid experiments support the idea that most members are interchangeable F-box subunits of SCF E3 complexes. Some members have two copies of this domain. Length = 230

>gnl|CDD|178754 PLN03215, PLN03215, ascorbic acid mannose pathway regulator 1; Provisional

 Score = 39.2 bits (91), Expect = 0.004
 Identities = 61/287 (21%), Positives = 101/287 (35%), Gaps = 59/287 (20%)

Query: 119 WKEFPEDLYEAVIARL-PIATFFRFRSVCQKWNS----LLKSHSFSQHCAQVPQGIPWFY 173
           W   PE+L   +  RL       RFRS+C+ W S    + K + F      +   I    
Sbjct: 4   WSTLPEELLHMIAGRLFSNVELKRFRSICRSWRSSVSGVGKKNPFRTRPLILFNPINPSE 63

Query: 174 TITHENV---NSGAMYDPSLKKWHHPTISSLPTKMIILPVASAGGLVCFLDIGHRNFYVC 230
           T+T +       GA    S   +   T+SS P+K  ++           +D+    F++ 
Sbjct: 64  TLTDDRSYISRPGAFL--SRAAFFRVTLSSSPSKGWLIKSD--------MDVNSGRFHLL 113

Query: 231 NPLTQSFKELPARSV--------KVWSRVAVGMTLNGNSTSSGYK--------------- 267
           NPL++      + SV        ++     V        T  GY+               
Sbjct: 114 NPLSRLPLRHSSESVDLLEFTVSEIREAYQVLDWAKRRETRPGYQRSALVKVKEGDNHRD 173

Query: 268 -ILWVGCDGEYEIYDSLRNSWTRPGSMPSNIKLPVSLNFRSQAVSVDGILYFMRSDPEGI 326
            +L +G DG+   +D   N       M  +    +    ++ A+   GI+Y++ SD E  
Sbjct: 174 GVLGIGRDGKINYWDG--NVLKALKQMGYHFSDIIVHKGQTYALDSIGIVYWINSDLEFS 231

Query: 327 -----VSYNMVTGVWKQFIIPTPLHLNDHTLAECGGRIMLVGLLTKN 368
                +  N+  G W            D    EC G + +V  L K 
Sbjct: 232 RFGTSLDENITDGCWT----------GDRRFVECCGELYIVERLPKE 268

Length = 373

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	468
TIGR01640	230	F_box_assoc_1 F-box protein interaction domain. Th	99.94
KOG4441	571	consensus Proteins containing BTB/POZ and Kelch do	99.88
PHA02713	557	hypothetical protein; Provisional	99.87
PLN03215	373	ascorbic acid mannose pathway regulator 1; Provisi	99.8
KOG4441	571	consensus Proteins containing BTB/POZ and Kelch do	99.79
PHA02713	557	hypothetical protein; Provisional	99.77
PHA03098	534	kelch-like protein; Provisional	99.74
PHA02790	480	Kelch-like protein; Provisional	99.73
TIGR03547	346	muta_rot_YjhT mutatrotase, YjhT family. Members of	99.73
PRK14131	376	N-acetylneuraminic acid mutarotase; Provisional	99.69
PLN02153	341	epithiospecifier protein	99.69
PHA02790	480	Kelch-like protein; Provisional	99.62
PLN02193	470	nitrile-specifier protein	99.61
PHA03098	534	kelch-like protein; Provisional	99.58
TIGR03548	323	mutarot_permut cyclically-permuted mutatrotase fam	99.57
PLN02153	341	epithiospecifier protein	99.54
PRK14131	376	N-acetylneuraminic acid mutarotase; Provisional	99.51
TIGR03547	346	muta_rot_YjhT mutatrotase, YjhT family. Members of	99.51
PLN02193	470	nitrile-specifier protein	99.42
TIGR03548	323	mutarot_permut cyclically-permuted mutatrotase fam	99.34
PF08268	129	FBA_3: F-box associated domain; InterPro: IPR01318	99.18
PF07734	164	FBA_1: F-box associated; InterPro: IPR006527 This	98.87
KOG4693	392	consensus Uncharacterized conserved protein, conta	98.86
PF12937	47	F-box-like: F-box-like; PDB: 1P22_A 2OVP_B 2OVR_B	98.8
KOG4693	392	consensus Uncharacterized conserved protein, conta	98.8
KOG0379	482	consensus Kelch repeat-containing proteins [Genera	98.7
PF00646	48	F-box: F-box domain; InterPro: IPR001810 The F-box	98.64
KOG1230	521	consensus Protein containing repeated kelch motifs	98.54
smart00256	41	FBOX A Receptor for Ubiquitination Targets.	98.53
KOG0379	482	consensus Kelch repeat-containing proteins [Genera	98.37
KOG0281	499	consensus Beta-TrCP (transducin repeats containing	98.0
KOG1230	521	consensus Protein containing repeated kelch motifs	97.87
COG3055	381	Uncharacterized protein conserved in bacteria [Fun	97.63
KOG2120	419	consensus SCF ubiquitin ligase, Skp2 component [Po	97.55
KOG4152	830	consensus Host cell transcription factor HCFC1 [Ce	97.54
PF01344	47	Kelch_1: Kelch motif; InterPro: IPR006652 Kelch is	97.42
PF13964	50	Kelch_6: Kelch motif	97.03
PF13964	50	Kelch_6: Kelch motif	97.01
COG3055	381	Uncharacterized protein conserved in bacteria [Fun	96.88
PF07646	49	Kelch_2: Kelch motif; InterPro: IPR011498 Kelch is	96.79
KOG0274	537	consensus Cdc4 and related F-box and WD-40 protein	96.49
PF07893	342	DUF1668: Protein of unknown function (DUF1668); In	96.44
PF01344	47	Kelch_1: Kelch motif; InterPro: IPR006652 Kelch is	96.15
PF13418	49	Kelch_4: Galactose oxidase, central domain; PDB: 2	96.09
smart00612	47	Kelch Kelch domain.	95.8
KOG2997	366	consensus F-box protein FBX9 [General function pre	95.79
PF08450	246	SGL: SMP-30/Gluconolaconase/LRE-like region; Inter	95.6
TIGR01640	230	F_box_assoc_1 F-box protein interaction domain. Th	95.32
PF07250	243	Glyoxal_oxid_N: Glyoxal oxidase N-terminus; InterP	95.24
PF07646	49	Kelch_2: Kelch motif; InterPro: IPR011498 Kelch is	95.02
PRK11138	394	outer membrane biogenesis protein BamB; Provisiona	94.71
COG4257	353	Vgb Streptogramin lyase [Defense mechanisms]	94.35
PF05096	264	Glu_cyclase_2: Glutamine cyclotransferase; InterPr	94.27
KOG4152	830	consensus Host cell transcription factor HCFC1 [Ce	94.16
smart00612	47	Kelch Kelch domain.	94.08
PF02191	250	OLF: Olfactomedin-like domain; InterPro: IPR003112	94.07
PF13418	49	Kelch_4: Galactose oxidase, central domain; PDB: 2	93.43
smart00284	255	OLF Olfactomedin-like domains.	93.34
PTZ00421	493	coronin; Provisional	93.23
KOG2437	723	consensus Muskelin [Signal transduction mechanisms	92.89
PF13415	49	Kelch_3: Galactose oxidase, central domain	92.75
PF13360	238	PQQ_2: PQQ-like domain; PDB: 3HXJ_B 1YIQ_A 1KV9_A	92.62
PF10282	345	Lactonase: Lactonase, 7-bladed beta-propeller; Int	92.56
PF13415	49	Kelch_3: Galactose oxidase, central domain	92.44
PF13360	238	PQQ_2: PQQ-like domain; PDB: 3HXJ_B 1YIQ_A 1KV9_A	91.44
COG4257	353	Vgb Streptogramin lyase [Defense mechanisms]	91.2
PRK11138	394	outer membrane biogenesis protein BamB; Provisiona	91.15
PF08450	246	SGL: SMP-30/Gluconolaconase/LRE-like region; Inter	90.6
PF07250	243	Glyoxal_oxid_N: Glyoxal oxidase N-terminus; InterP	89.66
PLN02772	398	guanylate kinase	89.59
PF07893	342	DUF1668: Protein of unknown function (DUF1668); In	89.5
PTZ00420	568	coronin; Provisional	88.64
KOG2437	723	consensus Muskelin [Signal transduction mechanisms	87.95
TIGR03300	377	assembly_YfgL outer membrane assembly lipoprotein	87.79
PF02897	414	Peptidase_S9_N: Prolyl oligopeptidase, N-terminal	86.82
PF07762	131	DUF1618: Protein of unknown function (DUF1618); In	86.49
COG3386	307	Gluconolactonase [Carbohydrate transport and metab	84.63
PF13854	42	Kelch_5: Kelch motif	84.38
PF05096	264	Glu_cyclase_2: Glutamine cyclotransferase; InterPr	84.28
KOG2055	514	consensus WD40 repeat protein [General function pr	83.57

>TIGR01640 F_box_assoc_1 F-box protein interaction domain

Probab=99.94  E-value=5.6e-25  Score=205.14  Aligned_cols=213  Identities=20%  Similarity=0.324  Sum_probs=151.8

Q ss_pred             eeecCceEEEEEcCCceEEEEcCCCCceEecCCCCcC--CcceeEEEEEEcCCCCCCCeEEEEEEec------CcEEEEe
Q 012227          210 VASAGGLVCFLDIGHRNFYVCNPLTQSFKELPARSVK--VWSRVAVGMTLNGNSTSSGYKILWVGCD------GEYEIYD  281 (468)
Q Consensus       210 ~~s~~GLl~~~~~~~~~~~V~NP~T~~~~~LP~~~~~--~~~~~~~~~~~d~~~~~~~ykVv~v~~~------~~v~vy~  281 (468)
                      +++||||||+...  ..++||||+|++++.||+++..  ......+++++|  +.+++|||+.+...      ..++||+
T Consensus         1 ~~sCnGLlc~~~~--~~~~V~NP~T~~~~~LP~~~~~~~~~~~~~~~~G~d--~~~~~YKVv~~~~~~~~~~~~~~~Vys   76 (230)
T TIGR01640         1 VVPCDGLICFSYG--KRLVVWNPSTGQSRWLPTPKSRRSNKESDTYFLGYD--PIEKQYKVLCFSDRSGNRNQSEHQVYT   76 (230)
T ss_pred             CcccceEEEEecC--CcEEEECCCCCCEEecCCCCCcccccccceEEEeec--ccCCcEEEEEEEeecCCCCCccEEEEE
Confidence            4789999999865  5799999999999999976432  111225788999  67899999998753      2489999


Q ss_pred             CCCCCccCCCCCCCCcccCcccccccceEEECCEEEEEEcCCC-----eEEEEECCCCeEEE-eecCCCCC--CCCceEE
Q 012227          282 SLRNSWTRPGSMPSNIKLPVSLNFRSQAVSVDGILYFMRSDPE-----GIVSYNMVTGVWKQ-FIIPTPLH--LNDHTLA  353 (468)
Q Consensus       282 s~t~~W~~~~~~p~~~~~~~~~~~~~~~v~~~G~lY~~~~~~~-----~i~~fD~~~~~w~~-i~~P~p~~--~~~~~l~  353 (468)
                      +++++|+.+...+...     .. ...++++||.+||++....     .|++||+.+++|+. +++|....  .....|+
T Consensus        77 ~~~~~Wr~~~~~~~~~-----~~-~~~~v~~~G~lyw~~~~~~~~~~~~IvsFDl~~E~f~~~i~~P~~~~~~~~~~~L~  150 (230)
T TIGR01640        77 LGSNSWRTIECSPPHH-----PL-KSRGVCINGVLYYLAYTLKTNPDYFIVSFDVSSERFKEFIPLPCGNSDSVDYLSLI  150 (230)
T ss_pred             eCCCCccccccCCCCc-----cc-cCCeEEECCEEEEEEEECCCCCcEEEEEEEcccceEeeeeecCccccccccceEEE
Confidence            9999999987433211     11 2238999999999985321     79999999999995 66654322  2246789


Q ss_pred             EECCeEEEEEEEeeCCccEEEEEEEecC-CCCeEEEEeeChhhhhcccCcceEEEEEecCCEEEEEeeeCCCCeEEEEEC
Q 012227          354 ECGGRIMLVGLLTKNAATCVCIWELQKM-TLLWKEVDRMPNIWCLDFYGKHVRMTCLGNKGLLMLSLRSRQMNRLVTYNV  432 (468)
Q Consensus       354 ~~~G~L~lv~~~~~~~~~~i~Vw~ld~~-~~~W~~v~~mp~~~~~~~~~~~~~~~~~~~~~~I~~~~~~~~~~~l~~YD~  432 (468)
                      +++|+|+++.....  ...++||+|+++ ..+|++..+++.....++... ....++.++|.|++.........+..||+
T Consensus       151 ~~~G~L~~v~~~~~--~~~~~IWvl~d~~~~~W~k~~~i~~~~~~~~~~~-~~~~~~~~~g~I~~~~~~~~~~~~~~y~~  227 (230)
T TIGR01640       151 NYKGKLAVLKQKKD--TNNFDLWVLNDAGKQEWSKLFTVPIPPLPDLVDD-NFLSGFTDKGEIVLCCEDENPFYIFYYNV  227 (230)
T ss_pred             EECCEEEEEEecCC--CCcEEEEEECCCCCCceeEEEEEcCcchhhhhhh-eeEeEEeeCCEEEEEeCCCCceEEEEEec
Confidence            99999999876432  245999999865 567999988874322222211 22345566788877654322334999999


Q ss_pred             CCC
Q 012227          433 MSR  435 (468)
Q Consensus       433 ~t~  435 (468)
                      +++
T Consensus       228 ~~~  230 (230)
T TIGR01640       228 GEN  230 (230)
T ss_pred             cCC
Confidence            875

This model describes a large family of plant domains, with several hundred members in Arabidopsis thaliana. Most examples are found C-terminal to an F-box (pfam00646), a 60 amino acid motif involved in ubiquitination of target proteins to mark them for degradation. Two-hybid experiments support the idea that most members are interchangeable F-box subunits of SCF E3 complexes. Some members have two copies of this domain.

>KOG4441 consensus Proteins containing BTB/POZ and Kelch domains, involved in regulatory/signal transduction processes [Signal transduction mechanisms; General function prediction only]

Probab=99.88  E-value=2.8e-20  Score=193.43  Aligned_cols=297  Identities=18%  Similarity=0.246  Sum_probs=203.4

Q ss_pred             hccChHHHHHHHHhcCChh----hHHHHhhcccchhhhccCcchhhhhhcCC--CCCCEEEEEeeCC-----CCCcceec
Q 012227          119 WKEFPEDLYEAVIARLPIA----TFFRFRSVCQKWNSLLKSHSFSQHCAQVP--QGIPWFYTITHEN-----VNSGAMYD  187 (468)
Q Consensus       119 w~~LP~DLl~~IL~RLp~~----~l~r~r~VCK~Wr~li~s~~F~~~~~~~~--~~~p~l~~~~~~~-----~~~~~~~d  187 (468)
                      .+-||...+.++....+..    .....-.-.|.|..+-.........+..+  ....-++.+....     ......||
T Consensus       228 ~~ll~~~~l~~~v~~~~~~~~~~~c~~~l~ea~~~~~~~~~~~~~~~~~t~~r~~~~~~l~~vGG~~~~~~~~~~ve~yd  307 (571)
T KOG4441|consen  228 LPLLPPQFLVEIVESEPLIKRDSACRDLLDEAKKYHLLPQRRPVMQSPRTRPRRSVSGKLVAVGGYNRQGQSLRSVECYD  307 (571)
T ss_pred             ccCCCHHHHHHHHhhhhhhccCHHHHHHHHHHHHHhhCcccCccccCCCcccCcCCCCeEEEECCCCCCCcccceeEEec
Confidence            3667777777777776621    11111122224444433221111111111  1123345444322     12366899


Q ss_pred             CCCCcccCCCCCCCCCCcEEEEeeecCceEEEEEcCC------ceEEEEcCCCCceEecCCCCcCCcceeEEEEEEcCCC
Q 012227          188 PSLKKWHHPTISSLPTKMIILPVASAGGLVCFLDIGH------RNFYVCNPLTQSFKELPARSVKVWSRVAVGMTLNGNS  261 (468)
Q Consensus       188 p~~~~w~~~~l~~~p~~~~~~~~~s~~GLl~~~~~~~------~~~~V~NP~T~~~~~LP~~~~~~~~~~~~~~~~d~~~  261 (468)
                      |.++.|..+  ..+|..+....+++.+|.|++.++..      +.+++|||.+++|..+|++...+..   ++++.-   
T Consensus       308 ~~~~~w~~~--a~m~~~r~~~~~~~~~~~lYv~GG~~~~~~~l~~ve~YD~~~~~W~~~a~M~~~R~~---~~v~~l---  379 (571)
T KOG4441|consen  308 PKTNEWSSL--APMPSPRCRVGVAVLNGKLYVVGGYDSGSDRLSSVERYDPRTNQWTPVAPMNTKRSD---FGVAVL---  379 (571)
T ss_pred             CCcCcEeec--CCCCcccccccEEEECCEEEEEccccCCCcccceEEEecCCCCceeccCCccCcccc---ceeEEE---
Confidence            999999754  34444433445888899998886543      4689999999999999998665543   222221   


Q ss_pred             CCCCeEEEEEEecC------cEEEEeCCCCCccCCCCCCCCcccCcccccccceEEECCEEEEEEcC------CCeEEEE
Q 012227          262 TSSGYKILWVGCDG------EYEIYDSLRNSWTRPGSMPSNIKLPVSLNFRSQAVSVDGILYFMRSD------PEGIVSY  329 (468)
Q Consensus       262 ~~~~ykVv~v~~~~------~v~vy~s~t~~W~~~~~~p~~~~~~~~~~~~~~~v~~~G~lY~~~~~------~~~i~~f  329 (468)
                         +.+||++||..      .+|.||+.++.|..+++|+..       +....++.++|+||.+++.      -..+.+|
T Consensus       380 ---~g~iYavGG~dg~~~l~svE~YDp~~~~W~~va~m~~~-------r~~~gv~~~~g~iYi~GG~~~~~~~l~sve~Y  449 (571)
T KOG4441|consen  380 ---DGKLYAVGGFDGEKSLNSVECYDPVTNKWTPVAPMLTR-------RSGHGVAVLGGKLYIIGGGDGSSNCLNSVECY  449 (571)
T ss_pred             ---CCEEEEEeccccccccccEEEecCCCCcccccCCCCcc-------eeeeEEEEECCEEEEEcCcCCCccccceEEEE
Confidence               26899999854      399999999999999988753       3456778899999999872      2579999


Q ss_pred             ECCCCeEEEeecCCCCCCCCceEEEECCeEEEEEEEeeCCccEEEEEEEecCCCCeEEEEeeChhhhhcccCcceEEEEE
Q 012227          330 NMVTGVWKQFIIPTPLHLNDHTLAECGGRIMLVGLLTKNAATCVCIWELQKMTLLWKEVDRMPNIWCLDFYGKHVRMTCL  409 (468)
Q Consensus       330 D~~~~~w~~i~~P~p~~~~~~~l~~~~G~L~lv~~~~~~~~~~i~Vw~ld~~~~~W~~v~~mp~~~~~~~~~~~~~~~~~  409 (468)
                      |+.+++|+.+ .||+..+....+++.+|+||++++... ....-.|-.+|+.+++|+.+..|......        ..++
T Consensus       450 DP~t~~W~~~-~~M~~~R~~~g~a~~~~~iYvvGG~~~-~~~~~~VE~ydp~~~~W~~v~~m~~~rs~--------~g~~  519 (571)
T KOG4441|consen  450 DPETNTWTLI-APMNTRRSGFGVAVLNGKIYVVGGFDG-TSALSSVERYDPETNQWTMVAPMTSPRSA--------VGVV  519 (571)
T ss_pred             cCCCCceeec-CCcccccccceEEEECCEEEEECCccC-CCccceEEEEcCCCCceeEcccCcccccc--------ccEE
Confidence            9999999997 788888888889999999999999765 22222466779999999999888765432        4456


Q ss_pred             ecCCEEEEEeeeC---CCCeEEEEECCCCcEEEccCC
Q 012227          410 GNKGLLMLSLRSR---QMNRLVTYNVMSREWLKVPGC  443 (468)
Q Consensus       410 ~~~~~I~~~~~~~---~~~~l~~YD~~t~~w~~v~~~  443 (468)
                      ..++.||+..+..   ....+.+||+++++|+.+..+
T Consensus       520 ~~~~~ly~vGG~~~~~~l~~ve~ydp~~d~W~~~~~~  556 (571)
T KOG4441|consen  520 VLGGKLYAVGGFDGNNNLNTVECYDPETDTWTEVTEP  556 (571)
T ss_pred             EECCEEEEEecccCccccceeEEcCCCCCceeeCCCc
Confidence            6689998854322   346799999999999999873

>PHA02713 hypothetical protein; Provisional

Probab=99.87  E-value=7.8e-21  Score=198.24  Aligned_cols=233  Identities=15%  Similarity=0.190  Sum_probs=170.4

Q ss_pred             cceecCCCCcccCCCCCCCCCCcEEEEeeecCceEEEEEcC------CceEEEEcCCCCceEecCCCCcCCcceeEEEEE
Q 012227          183 GAMYDPSLKKWHHPTISSLPTKMIILPVASAGGLVCFLDIG------HRNFYVCNPLTQSFKELPARSVKVWSRVAVGMT  256 (468)
Q Consensus       183 ~~~~dp~~~~w~~~~l~~~p~~~~~~~~~s~~GLl~~~~~~------~~~~~V~NP~T~~~~~LP~~~~~~~~~~~~~~~  256 (468)
                      ...||+..++|..+  +.+|.......++..+|.|++.++.      ...++++||.+++|..+|+++..+....  +..
T Consensus       274 v~~yd~~~~~W~~l--~~mp~~r~~~~~a~l~~~IYviGG~~~~~~~~~~v~~Yd~~~n~W~~~~~m~~~R~~~~--~~~  349 (557)
T PHA02713        274 ILVYNINTMEYSVI--STIPNHIINYASAIVDNEIIIAGGYNFNNPSLNKVYKINIENKIHVELPPMIKNRCRFS--LAV  349 (557)
T ss_pred             EEEEeCCCCeEEEC--CCCCccccceEEEEECCEEEEEcCCCCCCCccceEEEEECCCCeEeeCCCCcchhhcee--EEE
Confidence            35799999999854  3344332222366677877776553      1458999999999999999876554332  222


Q ss_pred             EcCCCCCCCeEEEEEEecC------cEEEEeCCCCCccCCCCCCCCcccCcccccccceEEECCEEEEEEcCC-------
Q 012227          257 LNGNSTSSGYKILWVGCDG------EYEIYDSLRNSWTRPGSMPSNIKLPVSLNFRSQAVSVDGILYFMRSDP-------  323 (468)
Q Consensus       257 ~d~~~~~~~ykVv~v~~~~------~v~vy~s~t~~W~~~~~~p~~~~~~~~~~~~~~~v~~~G~lY~~~~~~-------  323 (468)
                      .+       .+||++||..      .+++||+.+++|+.++.||...       ....++.++|+||++++..       
T Consensus       350 ~~-------g~IYviGG~~~~~~~~sve~Ydp~~~~W~~~~~mp~~r-------~~~~~~~~~g~IYviGG~~~~~~~~~  415 (557)
T PHA02713        350 ID-------DTIYAIGGQNGTNVERTIECYTMGDDKWKMLPDMPIAL-------SSYGMCVLDQYIYIIGGRTEHIDYTS  415 (557)
T ss_pred             EC-------CEEEEECCcCCCCCCceEEEEECCCCeEEECCCCCccc-------ccccEEEECCEEEEEeCCCccccccc
Confidence            33       5899998853      3999999999999999887653       2355778999999998632       


Q ss_pred             ----------------CeEEEEECCCCeEEEeecCCCCCCCCceEEEECCeEEEEEEEeeCCccEEEEEEEecCC-CCeE
Q 012227          324 ----------------EGIVSYNMVTGVWKQFIIPTPLHLNDHTLAECGGRIMLVGLLTKNAATCVCIWELQKMT-LLWK  386 (468)
Q Consensus       324 ----------------~~i~~fD~~~~~w~~i~~P~p~~~~~~~l~~~~G~L~lv~~~~~~~~~~i~Vw~ld~~~-~~W~  386 (468)
                                      ..+.+||+.+++|+.+ .|++..+....+++++|+||++|+........-.|.++|+.+ ++|+
T Consensus       416 ~~~~~~~~~~~~~~~~~~ve~YDP~td~W~~v-~~m~~~r~~~~~~~~~~~IYv~GG~~~~~~~~~~ve~Ydp~~~~~W~  494 (557)
T PHA02713        416 VHHMNSIDMEEDTHSSNKVIRYDTVNNIWETL-PNFWTGTIRPGVVSHKDDIYVVCDIKDEKNVKTCIFRYNTNTYNGWE  494 (557)
T ss_pred             ccccccccccccccccceEEEECCCCCeEeec-CCCCcccccCcEEEECCEEEEEeCCCCCCccceeEEEecCCCCCCee
Confidence                            3588999999999987 677777777889999999999998643211112467789988 7999


Q ss_pred             EEEeeChhhhhcccCcceEEEEEecCCEEEEEeeeCCCCeEEEEECCCCcEEEccC
Q 012227          387 EVDRMPNIWCLDFYGKHVRMTCLGNKGLLMLSLRSRQMNRLVTYNVMSREWLKVPG  442 (468)
Q Consensus       387 ~v~~mp~~~~~~~~~~~~~~~~~~~~~~I~~~~~~~~~~~l~~YD~~t~~w~~v~~  442 (468)
                      .+..||..+..        ..++..+|.||+..+......+.+||+.+++|+.+..
T Consensus       495 ~~~~m~~~r~~--------~~~~~~~~~iyv~Gg~~~~~~~e~yd~~~~~W~~~~~  542 (557)
T PHA02713        495 LITTTESRLSA--------LHTILHDNTIMMLHCYESYMLQDTFNVYTYEWNHICH  542 (557)
T ss_pred             EccccCccccc--------ceeEEECCEEEEEeeecceeehhhcCcccccccchhh
Confidence            99999876543        3344558999985433223468999999999998865

>PLN03215 ascorbic acid mannose pathway regulator 1; Provisional

Probab=99.80  E-value=2e-17  Score=159.74  Aligned_cols=297  Identities=17%  Similarity=0.225  Sum_probs=170.0

Q ss_pred             hhccChHHHHHHHHhcCCh-hhHHHHhhcccchhhhccCcchhhhhhcCCCCCCEEEEEeeCCCCCcceecCCCCcccCC
Q 012227          118 IWKEFPEDLYEAVIARLPI-ATFFRFRSVCQKWNSLLKSHSFSQHCAQVPQGIPWFYTITHENVNSGAMYDPSLKKWHHP  196 (468)
Q Consensus       118 ~w~~LP~DLl~~IL~RLp~-~~l~r~r~VCK~Wr~li~s~~F~~~~~~~~~~~p~l~~~~~~~~~~~~~~dp~~~~w~~~  196 (468)
                      .|++||+|||..|..|||. .|++|||+|||+||+.+....   ..... ++.||++...-.........|+...+- ..
T Consensus         3 ~Ws~Lp~dll~~i~~~l~~~~d~~~~~~vC~sWr~a~~~~~---~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~   77 (373)
T PLN03215          3 DWSTLPEELLHMIAGRLFSNVELKRFRSICRSWRSSVSGVG---KKNPF-RTRPLILFNPINPSETLTDDRSYISRP-GA   77 (373)
T ss_pred             ChhhCCHHHHHHHHhhCCcHHHHHHHHhhhhhHHHhccccc---ccCCc-ccccccccCcccCCCCccccccccccc-cc
Confidence            4999999999999999976 599999999999999876421   01111 223555432200000000111111110 00


Q ss_pred             CCCCCCCCcEE--EEeeecCceEEEEEc--CCceEEEEcCCCCceEecCCCCcCCc--------ceeEE-----------
Q 012227          197 TISSLPTKMII--LPVASAGGLVCFLDI--GHRNFYVCNPLTQSFKELPARSVKVW--------SRVAV-----------  253 (468)
Q Consensus       197 ~l~~~p~~~~~--~~~~s~~GLl~~~~~--~~~~~~V~NP~T~~~~~LP~~~~~~~--------~~~~~-----------  253 (468)
                      .+.  +...+.  .+.++..|||.-.+.  ..+++.+.||+++.-..+|+......        ..+.+           
T Consensus        78 ~ls--~~~~~r~~~~~~~~~~WLik~~~~~~~~~~~Ll~PLsr~~~~~~~~~lnll~f~v~ei~~~y~l~~~~~~~~~~~  155 (373)
T PLN03215         78 FLS--RAAFFRVTLSSSPSKGWLIKSDMDVNSGRFHLLNPLSRLPLRHSSESVDLLEFTVSEIREAYQVLDWAKRRETRP  155 (373)
T ss_pred             eee--eeEEEEeecCCCCCCCcEEEEeccccCCccEecCccccCccCCCCccceeeeeEEEEccceEEEEeccccccccc
Confidence            010  111111  112456788776543  34679999999999777776321100        00001           


Q ss_pred             -----EEEEcCCCCCCCeEEEEEEecCcEEEEeCCCCCccCCCCCCCCcccCcccccccceEEECCEEEEEEcCCCeEEE
Q 012227          254 -----GMTLNGNSTSSGYKILWVGCDGEYEIYDSLRNSWTRPGSMPSNIKLPVSLNFRSQAVSVDGILYFMRSDPEGIVS  328 (468)
Q Consensus       254 -----~~~~d~~~~~~~ykVv~v~~~~~v~vy~s~t~~W~~~~~~p~~~~~~~~~~~~~~~v~~~G~lY~~~~~~~~i~~  328 (468)
                           ++.........+|-|++++..+.+..+.  .+.|+.++.+..         .....++++|++|++... +.+.+
T Consensus       156 ~~~~~~~~~~~~~~~~~~~vl~i~~~g~l~~w~--~~~Wt~l~~~~~---------~~~DIi~~kGkfYAvD~~-G~l~~  223 (373)
T PLN03215        156 GYQRSALVKVKEGDNHRDGVLGIGRDGKINYWD--GNVLKALKQMGY---------HFSDIIVHKGQTYALDSI-GIVYW  223 (373)
T ss_pred             ceeEEEEEEeecCCCcceEEEEEeecCcEeeec--CCeeeEccCCCc---------eeeEEEEECCEEEEEcCC-CeEEE
Confidence                 1111000111234566666555555555  589998864322         246788999999999653 46777


Q ss_pred             EECCCCeEEEeecCC------CCCCCCceEEEECCeEEEEEEEeeC-------------CccEEEEEEEecCCCCeEEEE
Q 012227          329 YNMVTGVWKQFIIPT------PLHLNDHTLAECGGRIMLVGLLTKN-------------AATCVCIWELQKMTLLWKEVD  389 (468)
Q Consensus       329 fD~~~~~w~~i~~P~------p~~~~~~~l~~~~G~L~lv~~~~~~-------------~~~~i~Vw~ld~~~~~W~~v~  389 (468)
                      +|.+-+ -..+..+.      .......++|++.|+|++|......             ....++||++|....+|+++.
T Consensus       224 i~~~l~-i~~v~~~i~~~~~~g~~~~~~yLVEs~GdLLmV~R~~~~~~~~~~~~~~~~~~t~~f~VfklD~~~~~WveV~  302 (373)
T PLN03215        224 INSDLE-FSRFGTSLDENITDGCWTGDRRFVECCGELYIVERLPKESTWKRKADGFEYSRTVGFKVYKFDDELAKWMEVK  302 (373)
T ss_pred             EecCCc-eeeecceecccccCCcccCceeEEEECCEEEEEEEEccCcccccccccccccceeEEEEEEEcCCCCcEEEec
Confidence            774321 12221111      1112346799999999999985321             135799999998889999999


Q ss_pred             eeChhhhhcccCcceEEEEE-----e-cCCEEEEEeeeCCCCeEEEEECCCCcEEEc
Q 012227          390 RMPNIWCLDFYGKHVRMTCL-----G-NKGLLMLSLRSRQMNRLVTYNVMSREWLKV  440 (468)
Q Consensus       390 ~mp~~~~~~~~~~~~~~~~~-----~-~~~~I~~~~~~~~~~~l~~YD~~t~~w~~v  440 (468)
                      +|++...  |.|......+.     + .+|.||+..    .....+||++.++...+
T Consensus       303 sLgd~aL--FlG~~~s~sv~a~e~pG~k~NcIYFtd----d~~~~v~~~~dg~~~~~  353 (373)
T PLN03215        303 TLGDNAF--VMATDTCFSVLAHEFYGCLPNSIYFTE----DTMPKVFKLDNGNGSSI  353 (373)
T ss_pred             ccCCeEE--EEECCccEEEecCCCCCccCCEEEEEC----CCcceEEECCCCCccce
Confidence            9987632  12211111111     1 479999853    24577999999986555

>KOG4441 consensus Proteins containing BTB/POZ and Kelch domains, involved in regulatory/signal transduction processes [Signal transduction mechanisms; General function prediction only]

Probab=99.79  E-value=1.2e-17  Score=173.90  Aligned_cols=200  Identities=21%  Similarity=0.280  Sum_probs=154.8

Q ss_pred             ceEEEEcCCCCceEecCCCCcCCcceeEEEEEEcCCCCCCCeEEEEEEecC-c------EEEEeCCCCCccCCCCCCCCc
Q 012227          225 RNFYVCNPLTQSFKELPARSVKVWSRVAVGMTLNGNSTSSGYKILWVGCDG-E------YEIYDSLRNSWTRPGSMPSNI  297 (468)
Q Consensus       225 ~~~~V~NP~T~~~~~LP~~~~~~~~~~~~~~~~d~~~~~~~ykVv~v~~~~-~------v~vy~s~t~~W~~~~~~p~~~  297 (468)
                      ..+..+||.+++|..+.+++.++.. ..+++ .+       .+||++||.. +      +++||+.+++|+.+++|... 
T Consensus       301 ~~ve~yd~~~~~w~~~a~m~~~r~~-~~~~~-~~-------~~lYv~GG~~~~~~~l~~ve~YD~~~~~W~~~a~M~~~-  370 (571)
T KOG4441|consen  301 RSVECYDPKTNEWSSLAPMPSPRCR-VGVAV-LN-------GKLYVVGGYDSGSDRLSSVERYDPRTNQWTPVAPMNTK-  370 (571)
T ss_pred             ceeEEecCCcCcEeecCCCCccccc-ccEEE-EC-------CEEEEEccccCCCcccceEEEecCCCCceeccCCccCc-
Confidence            4578999999999999998765542 22222 12       3899998855 2      89999999999999988765 


Q ss_pred             ccCcccccccceEEECCEEEEEEcCC-----CeEEEEECCCCeEEEeecCCCCCCCCceEEEECCeEEEEEEEeeCCccE
Q 012227          298 KLPVSLNFRSQAVSVDGILYFMRSDP-----EGIVSYNMVTGVWKQFIIPTPLHLNDHTLAECGGRIMLVGLLTKNAATC  372 (468)
Q Consensus       298 ~~~~~~~~~~~~v~~~G~lY~~~~~~-----~~i~~fD~~~~~w~~i~~P~p~~~~~~~l~~~~G~L~lv~~~~~~~~~~  372 (468)
                            +.....+.++|.||++++..     ..++.||+.+++|..+ .|++..+.....++.+|+||++++........
T Consensus       371 ------R~~~~v~~l~g~iYavGG~dg~~~l~svE~YDp~~~~W~~v-a~m~~~r~~~gv~~~~g~iYi~GG~~~~~~~l  443 (571)
T KOG4441|consen  371 ------RSDFGVAVLDGKLYAVGGFDGEKSLNSVECYDPVTNKWTPV-APMLTRRSGHGVAVLGGKLYIIGGGDGSSNCL  443 (571)
T ss_pred             ------cccceeEEECCEEEEEeccccccccccEEEecCCCCccccc-CCCCcceeeeEEEEECCEEEEEcCcCCCcccc
Confidence                  33566778999999999732     4699999999999987 77877778888999999999999976532222


Q ss_pred             EEEEEEecCCCCeEEEEeeChhhhhcccCcceEEEEEecCCEEEEEeeeCC---CCeEEEEECCCCcEEEccCCccCCCC
Q 012227          373 VCIWELQKMTLLWKEVDRMPNIWCLDFYGKHVRMTCLGNKGLLMLSLRSRQ---MNRLVTYNVMSREWLKVPGCVVPRGR  449 (468)
Q Consensus       373 i~Vw~ld~~~~~W~~v~~mp~~~~~~~~~~~~~~~~~~~~~~I~~~~~~~~---~~~l~~YD~~t~~w~~v~~~~~~~~~  449 (468)
                      -.|-.+|+.+++|+.+..|+..+..        +.++..+|.||+..+...   ...+..||+++++|+.+..+..+++.
T Consensus       444 ~sve~YDP~t~~W~~~~~M~~~R~~--------~g~a~~~~~iYvvGG~~~~~~~~~VE~ydp~~~~W~~v~~m~~~rs~  515 (571)
T KOG4441|consen  444 NSVECYDPETNTWTLIAPMNTRRSG--------FGVAVLNGKIYVVGGFDGTSALSSVERYDPETNQWTMVAPMTSPRSA  515 (571)
T ss_pred             ceEEEEcCCCCceeecCCccccccc--------ceEEEECCEEEEECCccCCCccceEEEEcCCCCceeEcccCcccccc
Confidence            3455669999999999999876543        345556899998544322   34589999999999999888877753

>PHA02713 hypothetical protein; Provisional

Probab=99.77  E-value=3.6e-17  Score=170.79  Aligned_cols=199  Identities=13%  Similarity=0.153  Sum_probs=148.6

Q ss_pred             eEEEEcCCCCceEecCCCCcCCcceeEEEEEEcCCCCCCCeEEEEEEecC-------cEEEEeCCCCCccCCCCCCCCcc
Q 012227          226 NFYVCNPLTQSFKELPARSVKVWSRVAVGMTLNGNSTSSGYKILWVGCDG-------EYEIYDSLRNSWTRPGSMPSNIK  298 (468)
Q Consensus       226 ~~~V~NP~T~~~~~LP~~~~~~~~~~~~~~~~d~~~~~~~ykVv~v~~~~-------~v~vy~s~t~~W~~~~~~p~~~~  298 (468)
                      .+..+||.+++|..+++++..+.... ++ ..+       .+|+++||..       .+++||+.++.|..++.|+..+ 
T Consensus       273 ~v~~yd~~~~~W~~l~~mp~~r~~~~-~a-~l~-------~~IYviGG~~~~~~~~~~v~~Yd~~~n~W~~~~~m~~~R-  342 (557)
T PHA02713        273 CILVYNINTMEYSVISTIPNHIINYA-SA-IVD-------NEIIIAGGYNFNNPSLNKVYKINIENKIHVELPPMIKNR-  342 (557)
T ss_pred             CEEEEeCCCCeEEECCCCCccccceE-EE-EEC-------CEEEEEcCCCCCCCccceEEEEECCCCeEeeCCCCcchh-
Confidence            57899999999999998866543222 22 223       4899998742       3899999999999998887542 


Q ss_pred             cCcccccccceEEECCEEEEEEcCC-----CeEEEEECCCCeEEEeecCCCCCCCCceEEEECCeEEEEEEEeeCC----
Q 012227          299 LPVSLNFRSQAVSVDGILYFMRSDP-----EGIVSYNMVTGVWKQFIIPTPLHLNDHTLAECGGRIMLVGLLTKNA----  369 (468)
Q Consensus       299 ~~~~~~~~~~~v~~~G~lY~~~~~~-----~~i~~fD~~~~~w~~i~~P~p~~~~~~~l~~~~G~L~lv~~~~~~~----  369 (468)
                            ....++.++|+||++|+..     ..+.+||+.+++|..+ .|+|.......+++++|+||++|+.....    
T Consensus       343 ------~~~~~~~~~g~IYviGG~~~~~~~~sve~Ydp~~~~W~~~-~~mp~~r~~~~~~~~~g~IYviGG~~~~~~~~~  415 (557)
T PHA02713        343 ------CRFSLAVIDDTIYAIGGQNGTNVERTIECYTMGDDKWKML-PDMPIALSSYGMCVLDQYIYIIGGRTEHIDYTS  415 (557)
T ss_pred             ------hceeEEEECCEEEEECCcCCCCCCceEEEEECCCCeEEEC-CCCCcccccccEEEECCEEEEEeCCCccccccc
Confidence                  2456778999999999742     3589999999999987 67787777778889999999999864210    


Q ss_pred             -------------ccEEEEEEEecCCCCeEEEEeeChhhhhcccCcceEEEEEecCCEEEEEeeeCC----CCeEEEEEC
Q 012227          370 -------------ATCVCIWELQKMTLLWKEVDRMPNIWCLDFYGKHVRMTCLGNKGLLMLSLRSRQ----MNRLVTYNV  432 (468)
Q Consensus       370 -------------~~~i~Vw~ld~~~~~W~~v~~mp~~~~~~~~~~~~~~~~~~~~~~I~~~~~~~~----~~~l~~YD~  432 (468)
                                   ...-.|.++|+.+++|+.+..|+.....        ..++..+|.||+..+...    ...+.+||+
T Consensus       416 ~~~~~~~~~~~~~~~~~~ve~YDP~td~W~~v~~m~~~r~~--------~~~~~~~~~IYv~GG~~~~~~~~~~ve~Ydp  487 (557)
T PHA02713        416 VHHMNSIDMEEDTHSSNKVIRYDTVNNIWETLPNFWTGTIR--------PGVVSHKDDIYVVCDIKDEKNVKTCIFRYNT  487 (557)
T ss_pred             ccccccccccccccccceEEEECCCCCeEeecCCCCccccc--------CcEEEECCEEEEEeCCCCCCccceeEEEecC
Confidence                         0123577889999999999999765432        223445789988543211    134789999


Q ss_pred             CC-CcEEEccCCccCCCC
Q 012227          433 MS-REWLKVPGCVVPRGR  449 (468)
Q Consensus       433 ~t-~~w~~v~~~~~~~~~  449 (468)
                      ++ ++|+.++.+|.++..
T Consensus       488 ~~~~~W~~~~~m~~~r~~  505 (557)
T PHA02713        488 NTYNGWELITTTESRLSA  505 (557)
T ss_pred             CCCCCeeEccccCccccc
Confidence            99 899999999887753

>PHA03098 kelch-like protein; Provisional

Probab=99.74  E-value=4e-16  Score=163.72  Aligned_cols=233  Identities=11%  Similarity=0.134  Sum_probs=159.9

Q ss_pred             eecCCCCcccCCCCCCCCCCcEEEEeeecCceEEEEEcC------CceEEEEcCCCCceEecCCCCcCCcceeEEEEEEc
Q 012227          185 MYDPSLKKWHHPTISSLPTKMIILPVASAGGLVCFLDIG------HRNFYVCNPLTQSFKELPARSVKVWSRVAVGMTLN  258 (468)
Q Consensus       185 ~~dp~~~~w~~~~l~~~p~~~~~~~~~s~~GLl~~~~~~------~~~~~V~NP~T~~~~~LP~~~~~~~~~~~~~~~~d  258 (468)
                      .|++..++|..+  +..+...... .+..++.|++.++.      ...++++||.|++|..+|+++.++.....+  ..+
T Consensus       268 ~~~~~~~~~~~~--~~~~~~~~~~-~~~~~~~lyv~GG~~~~~~~~~~v~~yd~~~~~W~~~~~~~~~R~~~~~~--~~~  342 (534)
T PHA03098        268 TNYSPLSEINTI--IDIHYVYCFG-SVVLNNVIYFIGGMNKNNLSVNSVVSYDTKTKSWNKVPELIYPRKNPGVT--VFN  342 (534)
T ss_pred             ecchhhhhcccc--cCccccccce-EEEECCEEEEECCCcCCCCeeccEEEEeCCCCeeeECCCCCcccccceEE--EEC
Confidence            466667777643  2223221112 44456666555432      136899999999999999876554332222  223


Q ss_pred             CCCCCCCeEEEEEEecC------cEEEEeCCCCCccCCCCCCCCcccCcccccccceEEECCEEEEEEcC------CCeE
Q 012227          259 GNSTSSGYKILWVGCDG------EYEIYDSLRNSWTRPGSMPSNIKLPVSLNFRSQAVSVDGILYFMRSD------PEGI  326 (468)
Q Consensus       259 ~~~~~~~ykVv~v~~~~------~v~vy~s~t~~W~~~~~~p~~~~~~~~~~~~~~~v~~~G~lY~~~~~------~~~i  326 (468)
                             .+|+++||..      .+++||+.+++|+..+.+|...       ....++.++|++|++++.      ...+
T Consensus       343 -------~~lyv~GG~~~~~~~~~v~~yd~~~~~W~~~~~lp~~r-------~~~~~~~~~~~iYv~GG~~~~~~~~~~v  408 (534)
T PHA03098        343 -------NRIYVIGGIYNSISLNTVESWKPGESKWREEPPLIFPR-------YNPCVVNVNNLIYVIGGISKNDELLKTV  408 (534)
T ss_pred             -------CEEEEEeCCCCCEecceEEEEcCCCCceeeCCCcCcCC-------ccceEEEECCEEEEECCcCCCCcccceE
Confidence                   4799998753      3899999999999988877542       245567789999999872      1468


Q ss_pred             EEEECCCCeEEEeecCCCCCCCCceEEEECCeEEEEEEEeeCCc--cEEEEEEEecCCCCeEEEEeeChhhhhcccCcce
Q 012227          327 VSYNMVTGVWKQFIIPTPLHLNDHTLAECGGRIMLVGLLTKNAA--TCVCIWELQKMTLLWKEVDRMPNIWCLDFYGKHV  404 (468)
Q Consensus       327 ~~fD~~~~~w~~i~~P~p~~~~~~~l~~~~G~L~lv~~~~~~~~--~~i~Vw~ld~~~~~W~~v~~mp~~~~~~~~~~~~  404 (468)
                      ..||+.+++|..+ .|+|..+.....+..+|+||++++......  ..-.+|.+|..+++|+++..++.....       
T Consensus       409 ~~yd~~t~~W~~~-~~~p~~r~~~~~~~~~~~iyv~GG~~~~~~~~~~~~v~~yd~~~~~W~~~~~~~~~r~~-------  480 (534)
T PHA03098        409 ECFSLNTNKWSKG-SPLPISHYGGCAIYHDGKIYVIGGISYIDNIKVYNIVESYNPVTNKWTELSSLNFPRIN-------  480 (534)
T ss_pred             EEEeCCCCeeeec-CCCCccccCceEEEECCEEEEECCccCCCCCcccceEEEecCCCCceeeCCCCCccccc-------
Confidence            9999999999987 566766666778889999999998653211  122488899999999999877644321       


Q ss_pred             EEEEEecCCEEEEEeeeC---CCCeEEEEECCCCcEEEccCCcc
Q 012227          405 RMTCLGNKGLLMLSLRSR---QMNRLVTYNVMSREWLKVPGCVV  445 (468)
Q Consensus       405 ~~~~~~~~~~I~~~~~~~---~~~~l~~YD~~t~~w~~v~~~~~  445 (468)
                       ..++..+|.||+..+..   ....+.+||+++++|+.++..|-
T Consensus       481 -~~~~~~~~~iyv~GG~~~~~~~~~v~~yd~~~~~W~~~~~~p~  523 (534)
T PHA03098        481 -ASLCIFNNKIYVVGGDKYEYYINEIEVYDDKTNTWTLFCKFPK  523 (534)
T ss_pred             -ceEEEECCEEEEEcCCcCCcccceeEEEeCCCCEEEecCCCcc
Confidence             11222378888743321   13579999999999999987653

>PHA02790 Kelch-like protein; Provisional

Probab=99.73  E-value=6.1e-16  Score=159.27  Aligned_cols=195  Identities=15%  Similarity=0.131  Sum_probs=143.1

Q ss_pred             cCceEEEEEcC-----CceEEEEcCCCCceEecCCCCcCCcceeEEEEEEcCCCCCCCeEEEEEEec---CcEEEEeCCC
Q 012227          213 AGGLVCFLDIG-----HRNFYVCNPLTQSFKELPARSVKVWSRVAVGMTLNGNSTSSGYKILWVGCD---GEYEIYDSLR  284 (468)
Q Consensus       213 ~~GLl~~~~~~-----~~~~~V~NP~T~~~~~LP~~~~~~~~~~~~~~~~d~~~~~~~ykVv~v~~~---~~v~vy~s~t  284 (468)
                      .++.|++.++.     ...++.|||.+++|..+|+++.++....  +...+       .+|+++||.   ..++.||+.+
T Consensus       270 ~~~~lyviGG~~~~~~~~~v~~Ydp~~~~W~~~~~m~~~r~~~~--~v~~~-------~~iYviGG~~~~~sve~ydp~~  340 (480)
T PHA02790        270 VGEVVYLIGGWMNNEIHNNAIAVNYISNNWIPIPPMNSPRLYAS--GVPAN-------NKLYVVGGLPNPTSVERWFHGD  340 (480)
T ss_pred             ECCEEEEEcCCCCCCcCCeEEEEECCCCEEEECCCCCchhhcce--EEEEC-------CEEEEECCcCCCCceEEEECCC
Confidence            45666555432     2358899999999999999865543322  22233       589999885   3499999999


Q ss_pred             CCccCCCCCCCCcccCcccccccceEEECCEEEEEEcCC---CeEEEEECCCCeEEEeecCCCCCCCCceEEEECCeEEE
Q 012227          285 NSWTRPGSMPSNIKLPVSLNFRSQAVSVDGILYFMRSDP---EGIVSYNMVTGVWKQFIIPTPLHLNDHTLAECGGRIML  361 (468)
Q Consensus       285 ~~W~~~~~~p~~~~~~~~~~~~~~~v~~~G~lY~~~~~~---~~i~~fD~~~~~w~~i~~P~p~~~~~~~l~~~~G~L~l  361 (468)
                      ++|..+++|+..+       ....++.++|+||++|+..   ..+..||+.+++|+.+ .|++..+....+++.+|+||+
T Consensus       341 n~W~~~~~l~~~r-------~~~~~~~~~g~IYviGG~~~~~~~ve~ydp~~~~W~~~-~~m~~~r~~~~~~~~~~~IYv  412 (480)
T PHA02790        341 AAWVNMPSLLKPR-------CNPAVASINNVIYVIGGHSETDTTTEYLLPNHDQWQFG-PSTYYPHYKSCALVFGRRLFL  412 (480)
T ss_pred             CeEEECCCCCCCC-------cccEEEEECCEEEEecCcCCCCccEEEEeCCCCEEEeC-CCCCCccccceEEEECCEEEE
Confidence            9999998887542       2456778999999998732   4588999999999987 567666666778899999999


Q ss_pred             EEEEeeCCccEEEEEEEecCCCCeEEEEeeChhhhhcccCcceEEEEEecCCEEEEEeeeC---CCCeEEEEECCCCcEE
Q 012227          362 VGLLTKNAATCVCIWELQKMTLLWKEVDRMPNIWCLDFYGKHVRMTCLGNKGLLMLSLRSR---QMNRLVTYNVMSREWL  438 (468)
Q Consensus       362 v~~~~~~~~~~i~Vw~ld~~~~~W~~v~~mp~~~~~~~~~~~~~~~~~~~~~~I~~~~~~~---~~~~l~~YD~~t~~w~  438 (468)
                      +|+.       .++  +++.+++|+.+..|+.....        ..++..+|.||+..+..   ....+.+||+++++|+
T Consensus       413 ~GG~-------~e~--ydp~~~~W~~~~~m~~~r~~--------~~~~v~~~~IYviGG~~~~~~~~~ve~Yd~~~~~W~  475 (480)
T PHA02790        413 VGRN-------AEF--YCESSNTWTLIDDPIYPRDN--------PELIIVDNKLLLIGGFYRGSYIDTIEVYNNRTYSWN  475 (480)
T ss_pred             ECCc-------eEE--ecCCCCcEeEcCCCCCCccc--------cEEEEECCEEEEECCcCCCcccceEEEEECCCCeEE
Confidence            9852       244  57778999999988754432        23444578998854321   1356899999999998


Q ss_pred             Ecc
Q 012227          439 KVP  441 (468)
Q Consensus       439 ~v~  441 (468)
                      ...
T Consensus       476 ~~~  478 (480)
T PHA02790        476 IWD  478 (480)
T ss_pred             ecC
Confidence            653

>TIGR03547 muta_rot_YjhT mutatrotase, YjhT family

Probab=99.73  E-value=2.1e-15  Score=149.47  Aligned_cols=221  Identities=15%  Similarity=0.201  Sum_probs=145.2

Q ss_pred             eeecCceEEEEEcC-CceEEEEcC--CCCceEecCCCCc-CCcceeEEEEEEcCCCCCCCeEEEEEEec-----------
Q 012227          210 VASAGGLVCFLDIG-HRNFYVCNP--LTQSFKELPARSV-KVWSRVAVGMTLNGNSTSSGYKILWVGCD-----------  274 (468)
Q Consensus       210 ~~s~~GLl~~~~~~-~~~~~V~NP--~T~~~~~LP~~~~-~~~~~~~~~~~~d~~~~~~~ykVv~v~~~-----------  274 (468)
                      .+..++-|++.++. ...++++|+  .+++|..+|+++. .+.... + ...+       -+|+++|+.           
T Consensus        13 ~~~~~~~vyv~GG~~~~~~~~~d~~~~~~~W~~l~~~p~~~R~~~~-~-~~~~-------~~iYv~GG~~~~~~~~~~~~   83 (346)
T TIGR03547        13 GAIIGDKVYVGLGSAGTSWYKLDLKKPSKGWQKIADFPGGPRNQAV-A-AAID-------GKLYVFGGIGKANSEGSPQV   83 (346)
T ss_pred             EEEECCEEEEEccccCCeeEEEECCCCCCCceECCCCCCCCcccce-E-EEEC-------CEEEEEeCCCCCCCCCccee
Confidence            44557777775443 356888885  7889999998763 332221 2 2233       489999874           


Q ss_pred             -CcEEEEeCCCCCccCCCC-CCCCcccCcccccccceE-EECCEEEEEEcCC----------------------------
Q 012227          275 -GEYEIYDSLRNSWTRPGS-MPSNIKLPVSLNFRSQAV-SVDGILYFMRSDP----------------------------  323 (468)
Q Consensus       275 -~~v~vy~s~t~~W~~~~~-~p~~~~~~~~~~~~~~~v-~~~G~lY~~~~~~----------------------------  323 (468)
                       ..+++||+.+++|+.++. +|..       +....++ .++|+||++++..                            
T Consensus        84 ~~~v~~Yd~~~~~W~~~~~~~p~~-------~~~~~~~~~~~g~IYviGG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  156 (346)
T TIGR03547        84 FDDVYRYDPKKNSWQKLDTRSPVG-------LLGASGFSLHNGQAYFTGGVNKNIFDGYFADLSAADKDSEPKDKLIAAY  156 (346)
T ss_pred             cccEEEEECCCCEEecCCCCCCCc-------ccceeEEEEeCCEEEEEcCcChHHHHHHHhhHhhcCccchhhhhhHHHH
Confidence             138999999999999863 2322       1122234 5899999998632                            


Q ss_pred             -----------CeEEEEECCCCeEEEeecCCCC-CCCCceEEEECCeEEEEEEEeeCCccEEEEEE--EecCCCCeEEEE
Q 012227          324 -----------EGIVSYNMVTGVWKQFIIPTPL-HLNDHTLAECGGRIMLVGLLTKNAATCVCIWE--LQKMTLLWKEVD  389 (468)
Q Consensus       324 -----------~~i~~fD~~~~~w~~i~~P~p~-~~~~~~l~~~~G~L~lv~~~~~~~~~~i~Vw~--ld~~~~~W~~v~  389 (468)
                                 ..+.+||+.+++|+.+ .|+|. .+....++.++|+||++++.........++|.  +++.+++|+++.
T Consensus       157 ~~~~~~~~~~~~~v~~YDp~t~~W~~~-~~~p~~~r~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~y~~~~~~~~W~~~~  235 (346)
T TIGR03547       157 FSQPPEDYFWNKNVLSYDPSTNQWRNL-GENPFLGTAGSAIVHKGNKLLLINGEIKPGLRTAEVKQYLFTGGKLEWNKLP  235 (346)
T ss_pred             hCCChhHcCccceEEEEECCCCceeEC-ccCCCCcCCCceEEEECCEEEEEeeeeCCCccchheEEEEecCCCceeeecC
Confidence                       4689999999999987 45664 45566788899999999987543223334544  455678999999


Q ss_pred             eeChhhhhcccCcceEEEEEecCCEEEEEeeeCC--------------------CCeEEEEECCCCcEEEccCCccCCC
Q 012227          390 RMPNIWCLDFYGKHVRMTCLGNKGLLMLSLRSRQ--------------------MNRLVTYNVMSREWLKVPGCVVPRG  448 (468)
Q Consensus       390 ~mp~~~~~~~~~~~~~~~~~~~~~~I~~~~~~~~--------------------~~~l~~YD~~t~~w~~v~~~~~~~~  448 (468)
                      .||........+. ....++..+|.||+..+...                    ...+.+||+++++|+.++.+|.++.
T Consensus       236 ~m~~~r~~~~~~~-~~~~a~~~~~~Iyv~GG~~~~~~~~~~~~~~~~~~~~~~~~~~~e~yd~~~~~W~~~~~lp~~~~  313 (346)
T TIGR03547       236 PLPPPKSSSQEGL-AGAFAGISNGVLLVAGGANFPGAQENYKNGKLYAHEGLIKAWSSEVYALDNGKWSKVGKLPQGLA  313 (346)
T ss_pred             CCCCCCCCccccc-cEEeeeEECCEEEEeecCCCCCchhhhhcCCccccCCCCceeEeeEEEecCCcccccCCCCCCce
Confidence            9975432100000 01223335788887543210                    0257899999999999998887653

Members of this protein family contain multiple copies of the beta-propeller-forming Kelch repeat. All are full-length homologs to YjhT of Escherichia coli, which has been identified as a mutarotase for sialic acid. This protein improves bacterial ability to obtain host sialic acid, and thus serves as a virulence factor. Some bacteria carry what appears to be a cyclically permuted homolog of this protein.

>PRK14131 N-acetylneuraminic acid mutarotase; Provisional

Probab=99.69  E-value=7.6e-15  Score=146.85  Aligned_cols=222  Identities=16%  Similarity=0.148  Sum_probs=143.3

Q ss_pred             eeecCceEEEEEc-CCceEEEEcCC--CCceEecCCCCc-CCcceeEEEEEEcCCCCCCCeEEEEEEec-----------
Q 012227          210 VASAGGLVCFLDI-GHRNFYVCNPL--TQSFKELPARSV-KVWSRVAVGMTLNGNSTSSGYKILWVGCD-----------  274 (468)
Q Consensus       210 ~~s~~GLl~~~~~-~~~~~~V~NP~--T~~~~~LP~~~~-~~~~~~~~~~~~d~~~~~~~ykVv~v~~~-----------  274 (468)
                      .+..++-|++..+ ....++++|+.  +++|..+++++. .+.. ..+ ...+       -+|+++|+.           
T Consensus        34 ~~~~~~~iyv~gG~~~~~~~~~d~~~~~~~W~~l~~~p~~~r~~-~~~-v~~~-------~~IYV~GG~~~~~~~~~~~~  104 (376)
T PRK14131         34 GAIDNNTVYVGLGSAGTSWYKLDLNAPSKGWTKIAAFPGGPREQ-AVA-AFID-------GKLYVFGGIGKTNSEGSPQV  104 (376)
T ss_pred             EEEECCEEEEEeCCCCCeEEEEECCCCCCCeEECCcCCCCCccc-ceE-EEEC-------CEEEEEcCCCCCCCCCceeE
Confidence            5556777776543 33467888875  578999998653 2222 111 2223       478888863           


Q ss_pred             -CcEEEEeCCCCCccCCCCC-CCCcccCcccccccceEE-ECCEEEEEEcCC----------------------------
Q 012227          275 -GEYEIYDSLRNSWTRPGSM-PSNIKLPVSLNFRSQAVS-VDGILYFMRSDP----------------------------  323 (468)
Q Consensus       275 -~~v~vy~s~t~~W~~~~~~-p~~~~~~~~~~~~~~~v~-~~G~lY~~~~~~----------------------------  323 (468)
                       ..+++||+.+++|+.++.+ |..       ...+.++. .+|+||++++..                            
T Consensus       105 ~~~v~~YD~~~n~W~~~~~~~p~~-------~~~~~~~~~~~~~IYv~GG~~~~~~~~~~~d~~~~~~~~~~~~~i~~~~  177 (376)
T PRK14131        105 FDDVYKYDPKTNSWQKLDTRSPVG-------LAGHVAVSLHNGKAYITGGVNKNIFDGYFEDLAAAGKDKTPKDKINDAY  177 (376)
T ss_pred             cccEEEEeCCCCEEEeCCCCCCCc-------ccceEEEEeeCCEEEEECCCCHHHHHHHHhhhhhcccchhhhhhhHHHH
Confidence             2388999999999998642 221       11233444 799999998732                            


Q ss_pred             -----------CeEEEEECCCCeEEEeecCCCC-CCCCceEEEECCeEEEEEEEeeCCccEEEEE--EEecCCCCeEEEE
Q 012227          324 -----------EGIVSYNMVTGVWKQFIIPTPL-HLNDHTLAECGGRIMLVGLLTKNAATCVCIW--ELQKMTLLWKEVD  389 (468)
Q Consensus       324 -----------~~i~~fD~~~~~w~~i~~P~p~-~~~~~~l~~~~G~L~lv~~~~~~~~~~i~Vw--~ld~~~~~W~~v~  389 (468)
                                 ..+.+||+.+++|..+ .|+|. ......++.++++||++++.........++|  ++++.+++|+++.
T Consensus       178 ~~~~~~~~~~~~~v~~YD~~t~~W~~~-~~~p~~~~~~~a~v~~~~~iYv~GG~~~~~~~~~~~~~~~~~~~~~~W~~~~  256 (376)
T PRK14131        178 FDKKPEDYFFNKEVLSYDPSTNQWKNA-GESPFLGTAGSAVVIKGNKLWLINGEIKPGLRTDAVKQGKFTGNNLKWQKLP  256 (376)
T ss_pred             hcCChhhcCcCceEEEEECCCCeeeEC-CcCCCCCCCcceEEEECCEEEEEeeeECCCcCChhheEEEecCCCcceeecC
Confidence                       3589999999999987 35554 4555677888999999998654333344555  4566678999999


Q ss_pred             eeChhhhhcccCcceEEEEEecCCEEEEEeeeCCC--------------------CeEEEEECCCCcEEEccCCccCCC
Q 012227          390 RMPNIWCLDFYGKHVRMTCLGNKGLLMLSLRSRQM--------------------NRLVTYNVMSREWLKVPGCVVPRG  448 (468)
Q Consensus       390 ~mp~~~~~~~~~~~~~~~~~~~~~~I~~~~~~~~~--------------------~~l~~YD~~t~~w~~v~~~~~~~~  448 (468)
                      .||...............++..++.||+..+....                    ..+.+||+++++|+.++.+|.++.
T Consensus       257 ~~p~~~~~~~~~~~~~~~a~~~~~~iyv~GG~~~~~~~~~~~~~~~~~~~~~~~~~~~e~yd~~~~~W~~~~~lp~~r~  335 (376)
T PRK14131        257 DLPPAPGGSSQEGVAGAFAGYSNGVLLVAGGANFPGARENYQNGKLYAHEGLKKSWSDEIYALVNGKWQKVGELPQGLA  335 (376)
T ss_pred             CCCCCCcCCcCCccceEeceeECCEEEEeeccCCCCChhhhhcCCcccccCCcceeehheEEecCCcccccCcCCCCcc
Confidence            98764321100000011123346788875432100                    135689999999999998887764

>PLN02153 epithiospecifier protein

Probab=99.69  E-value=1.1e-14  Score=144.03  Aligned_cols=216  Identities=18%  Similarity=0.228  Sum_probs=140.5

Q ss_pred             eeecCceEEEEEcC-------CceEEEEcCCCCceEecCCCC-cCCcceeEEEE-EEcCCCCCCCeEEEEEEec------
Q 012227          210 VASAGGLVCFLDIG-------HRNFYVCNPLTQSFKELPARS-VKVWSRVAVGM-TLNGNSTSSGYKILWVGCD------  274 (468)
Q Consensus       210 ~~s~~GLl~~~~~~-------~~~~~V~NP~T~~~~~LP~~~-~~~~~~~~~~~-~~d~~~~~~~ykVv~v~~~------  274 (468)
                      ++..++.|++.++.       ...++++|+.+++|..++++. .++......++ ..+       -+|+++|+.      
T Consensus        28 ~~~~~~~iyv~GG~~~~~~~~~~~~~~yd~~~~~W~~~~~~~~~p~~~~~~~~~~~~~-------~~iyv~GG~~~~~~~  100 (341)
T PLN02153         28 IAVVGDKLYSFGGELKPNEHIDKDLYVFDFNTHTWSIAPANGDVPRISCLGVRMVAVG-------TKLYIFGGRDEKREF  100 (341)
T ss_pred             EEEECCEEEEECCccCCCCceeCcEEEEECCCCEEEEcCccCCCCCCccCceEEEEEC-------CEEEEECCCCCCCcc
Confidence            44556777665432       136899999999999988753 22221111222 222       489988874      


Q ss_pred             CcEEEEeCCCCCccCCCCCCCCcccCcccccccceEEECCEEEEEEcCC-----------CeEEEEECCCCeEEEeecCC
Q 012227          275 GEYEIYDSLRNSWTRPGSMPSNIKLPVSLNFRSQAVSVDGILYFMRSDP-----------EGIVSYNMVTGVWKQFIIPT  343 (468)
Q Consensus       275 ~~v~vy~s~t~~W~~~~~~p~~~~~~~~~~~~~~~v~~~G~lY~~~~~~-----------~~i~~fD~~~~~w~~i~~P~  343 (468)
                      ..+++||+.+++|+.++.++... .|. .+..+.++..+++||++++..           ..+.+||+.+++|..++.+.
T Consensus       101 ~~v~~yd~~t~~W~~~~~~~~~~-~p~-~R~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~~~v~~yd~~~~~W~~l~~~~  178 (341)
T PLN02153        101 SDFYSYDTVKNEWTFLTKLDEEG-GPE-ARTFHSMASDENHVYVFGGVSKGGLMKTPERFRTIEAYNIADGKWVQLPDPG  178 (341)
T ss_pred             CcEEEEECCCCEEEEeccCCCCC-CCC-CceeeEEEEECCEEEEECCccCCCccCCCcccceEEEEECCCCeEeeCCCCC
Confidence            24899999999999887652210 111 123455677899999998631           24889999999999864321


Q ss_pred             --CCCCCCceEEEECCeEEEEEEEeeC-------CccEEEEEEEecCCCCeEEEEee---ChhhhhcccCcceEEEEEec
Q 012227          344 --PLHLNDHTLAECGGRIMLVGLLTKN-------AATCVCIWELQKMTLLWKEVDRM---PNIWCLDFYGKHVRMTCLGN  411 (468)
Q Consensus       344 --p~~~~~~~l~~~~G~L~lv~~~~~~-------~~~~i~Vw~ld~~~~~W~~v~~m---p~~~~~~~~~~~~~~~~~~~  411 (468)
                        +..+....++.++|+||++++....       ....-+|+.+|..+++|+++..+   |....        ...++..
T Consensus       179 ~~~~~r~~~~~~~~~~~iyv~GG~~~~~~~gG~~~~~~~~v~~yd~~~~~W~~~~~~g~~P~~r~--------~~~~~~~  250 (341)
T PLN02153        179 ENFEKRGGAGFAVVQGKIWVVYGFATSILPGGKSDYESNAVQFFDPASGKWTEVETTGAKPSARS--------VFAHAVV  250 (341)
T ss_pred             CCCCCCCcceEEEECCeEEEEeccccccccCCccceecCceEEEEcCCCcEEeccccCCCCCCcc--------eeeeEEE
Confidence              2344556678899999999875310       01123688889989999998753   32221        1234445


Q ss_pred             CCEEEEEeeeC------------CCCeEEEEECCCCcEEEccC
Q 012227          412 KGLLMLSLRSR------------QMNRLVTYNVMSREWLKVPG  442 (468)
Q Consensus       412 ~~~I~~~~~~~------------~~~~l~~YD~~t~~w~~v~~  442 (468)
                      ++.||+..+..            ..+.+++||+++++|+.+..
T Consensus       251 ~~~iyv~GG~~~~~~~~~~~~~~~~n~v~~~d~~~~~W~~~~~  293 (341)
T PLN02153        251 GKYIIIFGGEVWPDLKGHLGPGTLSNEGYALDTETLVWEKLGE  293 (341)
T ss_pred             CCEEEEECcccCCccccccccccccccEEEEEcCccEEEeccC
Confidence            68888754321            12368999999999999964

>PHA02790 Kelch-like protein; Provisional

Probab=99.62  E-value=2e-14  Score=148.01  Aligned_cols=183  Identities=11%  Similarity=0.091  Sum_probs=134.9

Q ss_pred             cceecCCCCcccCCCCCCCCCCcEEEEeeecCceEEEEEcC--CceEEEEcCCCCceEecCCCCcCCcceeEEEEEEcCC
Q 012227          183 GAMYDPSLKKWHHPTISSLPTKMIILPVASAGGLVCFLDIG--HRNFYVCNPLTQSFKELPARSVKVWSRVAVGMTLNGN  260 (468)
Q Consensus       183 ~~~~dp~~~~w~~~~l~~~p~~~~~~~~~s~~GLl~~~~~~--~~~~~V~NP~T~~~~~LP~~~~~~~~~~~~~~~~d~~  260 (468)
                      ...|||..++|..++  .++........+..+|.|++.++.  ...+..|||.+++|..+|+++..+....  +...+  
T Consensus       289 v~~Ydp~~~~W~~~~--~m~~~r~~~~~v~~~~~iYviGG~~~~~sve~ydp~~n~W~~~~~l~~~r~~~~--~~~~~--  362 (480)
T PHA02790        289 AIAVNYISNNWIPIP--PMNSPRLYASGVPANNKLYVVGGLPNPTSVERWFHGDAAWVNMPSLLKPRCNPA--VASIN--  362 (480)
T ss_pred             EEEEECCCCEEEECC--CCCchhhcceEEEECCEEEEECCcCCCCceEEEECCCCeEEECCCCCCCCcccE--EEEEC--
Confidence            457999999998643  333332222256678888877653  2458899999999999999876554322  22333  


Q ss_pred             CCCCCeEEEEEEecC----cEEEEeCCCCCccCCCCCCCCcccCcccccccceEEECCEEEEEEcCCCeEEEEECCCCeE
Q 012227          261 STSSGYKILWVGCDG----EYEIYDSLRNSWTRPGSMPSNIKLPVSLNFRSQAVSVDGILYFMRSDPEGIVSYNMVTGVW  336 (468)
Q Consensus       261 ~~~~~ykVv~v~~~~----~v~vy~s~t~~W~~~~~~p~~~~~~~~~~~~~~~v~~~G~lY~~~~~~~~i~~fD~~~~~w  336 (468)
                           .+|+++||..    .+++||+.+++|+.++.|+...       ....++.++|+||++++   ...+||+.+++|
T Consensus       363 -----g~IYviGG~~~~~~~ve~ydp~~~~W~~~~~m~~~r-------~~~~~~~~~~~IYv~GG---~~e~ydp~~~~W  427 (480)
T PHA02790        363 -----NVIYVIGGHSETDTTTEYLLPNHDQWQFGPSTYYPH-------YKSCALVFGRRLFLVGR---NAEFYCESSNTW  427 (480)
T ss_pred             -----CEEEEecCcCCCCccEEEEeCCCCEEEeCCCCCCcc-------ccceEEEECCEEEEECC---ceEEecCCCCcE
Confidence                 5899998743    3899999999999998877542       23456779999999985   478899999999


Q ss_pred             EEeecCCCCCCCCceEEEECCeEEEEEEEeeCCccEEEEEEEecCCCCeEEE
Q 012227          337 KQFIIPTPLHLNDHTLAECGGRIMLVGLLTKNAATCVCIWELQKMTLLWKEV  388 (468)
Q Consensus       337 ~~i~~P~p~~~~~~~l~~~~G~L~lv~~~~~~~~~~i~Vw~ld~~~~~W~~v  388 (468)
                      +.+ .|++..+....+++.+|+||++|+..... ..-.|..+|+.+++|+..
T Consensus       428 ~~~-~~m~~~r~~~~~~v~~~~IYviGG~~~~~-~~~~ve~Yd~~~~~W~~~  477 (480)
T PHA02790        428 TLI-DDPIYPRDNPELIIVDNKLLLIGGFYRGS-YIDTIEVYNNRTYSWNIW  477 (480)
T ss_pred             eEc-CCCCCCccccEEEEECCEEEEECCcCCCc-ccceEEEEECCCCeEEec
Confidence            987 56777777788999999999999865321 123466779889999753

>PLN02193 nitrile-specifier protein

Probab=99.61  E-value=2.2e-13  Score=140.01  Aligned_cols=235  Identities=14%  Similarity=0.172  Sum_probs=147.8

Q ss_pred             CcccCCCCC-CCCCCcEEEEeeecCceEEEEEcC-------CceEEEEcCCCCceEecCCCC-cCCcceeEEEE-EEcCC
Q 012227          191 KKWHHPTIS-SLPTKMIILPVASAGGLVCFLDIG-------HRNFYVCNPLTQSFKELPARS-VKVWSRVAVGM-TLNGN  260 (468)
Q Consensus       191 ~~w~~~~l~-~~p~~~~~~~~~s~~GLl~~~~~~-------~~~~~V~NP~T~~~~~LP~~~-~~~~~~~~~~~-~~d~~  260 (468)
                      .+|..++.. ..|..+....++..++.|++.++.       ...++++|+.+++|..+|+.. .+...+...++ ..+  
T Consensus       151 ~~W~~~~~~~~~P~pR~~h~~~~~~~~iyv~GG~~~~~~~~~~~v~~yD~~~~~W~~~~~~g~~P~~~~~~~~~v~~~--  228 (470)
T PLN02193        151 GKWIKVEQKGEGPGLRCSHGIAQVGNKIYSFGGEFTPNQPIDKHLYVFDLETRTWSISPATGDVPHLSCLGVRMVSIG--  228 (470)
T ss_pred             ceEEEcccCCCCCCCccccEEEEECCEEEEECCcCCCCCCeeCcEEEEECCCCEEEeCCCCCCCCCCcccceEEEEEC--
Confidence            688865432 123222111134445555555332       135899999999999887641 22111111222 222  


Q ss_pred             CCCCCeEEEEEEec------CcEEEEeCCCCCccCCCCCCCCcccCcccccccceEEECCEEEEEEcCC-----CeEEEE
Q 012227          261 STSSGYKILWVGCD------GEYEIYDSLRNSWTRPGSMPSNIKLPVSLNFRSQAVSVDGILYFMRSDP-----EGIVSY  329 (468)
Q Consensus       261 ~~~~~ykVv~v~~~------~~v~vy~s~t~~W~~~~~~p~~~~~~~~~~~~~~~v~~~G~lY~~~~~~-----~~i~~f  329 (468)
                           -+|+++++.      ..+++||+.+++|+.++.+...   |. .+..+.++.++++||++++..     ..+.+|
T Consensus       229 -----~~lYvfGG~~~~~~~ndv~~yD~~t~~W~~l~~~~~~---P~-~R~~h~~~~~~~~iYv~GG~~~~~~~~~~~~y  299 (470)
T PLN02193        229 -----STLYVFGGRDASRQYNGFYSFDTTTNEWKLLTPVEEG---PT-PRSFHSMAADEENVYVFGGVSATARLKTLDSY  299 (470)
T ss_pred             -----CEEEEECCCCCCCCCccEEEEECCCCEEEEcCcCCCC---CC-CccceEEEEECCEEEEECCCCCCCCcceEEEE
Confidence                 478888874      2489999999999988765311   11 123455677899999998632     358899


Q ss_pred             ECCCCeEEEeecC--CCCCCCCceEEEECCeEEEEEEEeeCCccEEEEEEEecCCCCeEEEEeeChhhhhcccCcceEEE
Q 012227          330 NMVTGVWKQFIIP--TPLHLNDHTLAECGGRIMLVGLLTKNAATCVCIWELQKMTLLWKEVDRMPNIWCLDFYGKHVRMT  407 (468)
Q Consensus       330 D~~~~~w~~i~~P--~p~~~~~~~l~~~~G~L~lv~~~~~~~~~~i~Vw~ld~~~~~W~~v~~mp~~~~~~~~~~~~~~~  407 (468)
                      |+.+++|+.+..|  ++..+....++..+|+||++++...  ...-++|++|..+++|+++..++......     ....
T Consensus       300 d~~t~~W~~~~~~~~~~~~R~~~~~~~~~gkiyviGG~~g--~~~~dv~~yD~~t~~W~~~~~~g~~P~~R-----~~~~  372 (470)
T PLN02193        300 NIVDKKWFHCSTPGDSFSIRGGAGLEVVQGKVWVVYGFNG--CEVDDVHYYDPVQDKWTQVETFGVRPSER-----SVFA  372 (470)
T ss_pred             ECCCCEEEeCCCCCCCCCCCCCcEEEEECCcEEEEECCCC--CccCceEEEECCCCEEEEeccCCCCCCCc-----ceeE
Confidence            9999999987543  2334455677888999999987542  12347889999999999987663211110     0123


Q ss_pred             EEecCCEEEEEeeeC------------CCCeEEEEECCCCcEEEccCC
Q 012227          408 CLGNKGLLMLSLRSR------------QMNRLVTYNVMSREWLKVPGC  443 (468)
Q Consensus       408 ~~~~~~~I~~~~~~~------------~~~~l~~YD~~t~~w~~v~~~  443 (468)
                      ++..++.||+..+..            ..+.+++||+.+++|++++..
T Consensus       373 ~~~~~~~iyv~GG~~~~~~~~~~~~~~~~ndv~~~D~~t~~W~~~~~~  420 (470)
T PLN02193        373 SAAVGKHIVIFGGEIAMDPLAHVGPGQLTDGTFALDTETLQWERLDKF  420 (470)
T ss_pred             EEEECCEEEEECCccCCccccccCccceeccEEEEEcCcCEEEEcccC
Confidence            344567887743321            113589999999999999754

>PHA03098 kelch-like protein; Provisional

Probab=99.58  E-value=1.1e-13  Score=145.18  Aligned_cols=197  Identities=14%  Similarity=0.177  Sum_probs=141.8

Q ss_pred             eEEEEcCCCCceEecCCCCcCCcceeEEEEEEcCCCCCCCeEEEEEEecC-------cEEEEeCCCCCccCCCCCCCCcc
Q 012227          226 NFYVCNPLTQSFKELPARSVKVWSRVAVGMTLNGNSTSSGYKILWVGCDG-------EYEIYDSLRNSWTRPGSMPSNIK  298 (468)
Q Consensus       226 ~~~V~NP~T~~~~~LP~~~~~~~~~~~~~~~~d~~~~~~~ykVv~v~~~~-------~v~vy~s~t~~W~~~~~~p~~~~  298 (468)
                      .+..+|+.+++|..+++.+...  .. .+...+       .+|+++||..       .+..||+.+++|..++.++..  
T Consensus       265 ~~~~~~~~~~~~~~~~~~~~~~--~~-~~~~~~-------~~lyv~GG~~~~~~~~~~v~~yd~~~~~W~~~~~~~~~--  332 (534)
T PHA03098        265 NYITNYSPLSEINTIIDIHYVY--CF-GSVVLN-------NVIYFIGGMNKNNLSVNSVVSYDTKTKSWNKVPELIYP--  332 (534)
T ss_pred             eeeecchhhhhcccccCccccc--cc-eEEEEC-------CEEEEECCCcCCCCeeccEEEEeCCCCeeeECCCCCcc--
Confidence            4566899999999887654221  11 122233       4788888742       388999999999998887643  


Q ss_pred             cCcccccccceEEECCEEEEEEcCC-----CeEEEEECCCCeEEEeecCCCCCCCCceEEEECCeEEEEEEEeeCCccEE
Q 012227          299 LPVSLNFRSQAVSVDGILYFMRSDP-----EGIVSYNMVTGVWKQFIIPTPLHLNDHTLAECGGRIMLVGLLTKNAATCV  373 (468)
Q Consensus       299 ~~~~~~~~~~~v~~~G~lY~~~~~~-----~~i~~fD~~~~~w~~i~~P~p~~~~~~~l~~~~G~L~lv~~~~~~~~~~i  373 (468)
                           +.....+.++|++|++|+..     ..+..||+.+++|+.+ .|+|..+.....+.++|+||++|+........-
T Consensus       333 -----R~~~~~~~~~~~lyv~GG~~~~~~~~~v~~yd~~~~~W~~~-~~lp~~r~~~~~~~~~~~iYv~GG~~~~~~~~~  406 (534)
T PHA03098        333 -----RKNPGVTVFNNRIYVIGGIYNSISLNTVESWKPGESKWREE-PPLIFPRYNPCVVNVNNLIYVIGGISKNDELLK  406 (534)
T ss_pred             -----cccceEEEECCEEEEEeCCCCCEecceEEEEcCCCCceeeC-CCcCcCCccceEEEECCEEEEECCcCCCCcccc
Confidence                 22456778899999999732     3588999999999986 566666677778889999999998644322234


Q ss_pred             EEEEEecCCCCeEEEEeeChhhhhcccCcceEEEEEecCCEEEEEeeeCC------CCeEEEEECCCCcEEEccCCccCC
Q 012227          374 CIWELQKMTLLWKEVDRMPNIWCLDFYGKHVRMTCLGNKGLLMLSLRSRQ------MNRLVTYNVMSREWLKVPGCVVPR  447 (468)
Q Consensus       374 ~Vw~ld~~~~~W~~v~~mp~~~~~~~~~~~~~~~~~~~~~~I~~~~~~~~------~~~l~~YD~~t~~w~~v~~~~~~~  447 (468)
                      .++++|..+++|+.+..||.....        ..++..++.||+..+...      ...+++||+++++|+.++.++.++
T Consensus       407 ~v~~yd~~t~~W~~~~~~p~~r~~--------~~~~~~~~~iyv~GG~~~~~~~~~~~~v~~yd~~~~~W~~~~~~~~~r  478 (534)
T PHA03098        407 TVECFSLNTNKWSKGSPLPISHYG--------GCAIYHDGKIYVIGGISYIDNIKVYNIVESYNPVTNKWTELSSLNFPR  478 (534)
T ss_pred             eEEEEeCCCCeeeecCCCCccccC--------ceEEEECCEEEEECCccCCCCCcccceEEEecCCCCceeeCCCCCccc
Confidence            678889888999999888755432        223445788887543211      235899999999999999887766


Q ss_pred             C
Q 012227          448 G  448 (468)
Q Consensus       448 ~  448 (468)
                      .
T Consensus       479 ~  479 (534)
T PHA03098        479 I  479 (534)
T ss_pred             c
Confidence            4

>TIGR03548 mutarot_permut cyclically-permuted mutatrotase family protein

Probab=99.57  E-value=1.3e-12  Score=128.29  Aligned_cols=198  Identities=12%  Similarity=0.116  Sum_probs=130.5

Q ss_pred             eEEEE-cCCCC-ceEecCCCCcCCcceeEEEEEEcCCCCCCCeEEEEEEecC------cEEEEeCCCCCc----cCCCCC
Q 012227          226 NFYVC-NPLTQ-SFKELPARSVKVWSRVAVGMTLNGNSTSSGYKILWVGCDG------EYEIYDSLRNSW----TRPGSM  293 (468)
Q Consensus       226 ~~~V~-NP~T~-~~~~LP~~~~~~~~~~~~~~~~d~~~~~~~ykVv~v~~~~------~v~vy~s~t~~W----~~~~~~  293 (468)
                      .++++ ++..+ +|..+++++.++....  +..++       -+|+++|+..      .++.||..++.|    +.++.+
T Consensus        40 ~v~~~~~~~~~~~W~~~~~lp~~r~~~~--~~~~~-------~~lyviGG~~~~~~~~~v~~~d~~~~~w~~~~~~~~~l  110 (323)
T TIGR03548        40 GIYIAKDENSNLKWVKDGQLPYEAAYGA--SVSVE-------NGIYYIGGSNSSERFSSVYRITLDESKEELICETIGNL  110 (323)
T ss_pred             eeEEEecCCCceeEEEcccCCccccceE--EEEEC-------CEEEEEcCCCCCCCceeEEEEEEcCCceeeeeeEcCCC
Confidence            46666 45433 7999988765543222  22233       3788888742      488999999888    566666


Q ss_pred             CCCcccCcccccccceEEECCEEEEEEcC-----CCeEEEEECCCCeEEEeecCCCC-CCCCceEEEECCeEEEEEEEee
Q 012227          294 PSNIKLPVSLNFRSQAVSVDGILYFMRSD-----PEGIVSYNMVTGVWKQFIIPTPL-HLNDHTLAECGGRIMLVGLLTK  367 (468)
Q Consensus       294 p~~~~~~~~~~~~~~~v~~~G~lY~~~~~-----~~~i~~fD~~~~~w~~i~~P~p~-~~~~~~l~~~~G~L~lv~~~~~  367 (468)
                      |...       ....+++++|+||++++.     ...+.+||+.+++|+.+. ++|. .+....++..+|+||++++...
T Consensus       111 p~~~-------~~~~~~~~~~~iYv~GG~~~~~~~~~v~~yd~~~~~W~~~~-~~p~~~r~~~~~~~~~~~iYv~GG~~~  182 (323)
T TIGR03548       111 PFTF-------ENGSACYKDGTLYVGGGNRNGKPSNKSYLFNLETQEWFELP-DFPGEPRVQPVCVKLQNELYVFGGGSN  182 (323)
T ss_pred             CcCc-------cCceEEEECCEEEEEeCcCCCccCceEEEEcCCCCCeeECC-CCCCCCCCcceEEEECCEEEEEcCCCC
Confidence            6442       235567789999999873     246899999999999873 3442 3445666789999999998542


Q ss_pred             CCccEEEEEEEecCCCCeEEEEeeChhhhhcccCcceEEEEEecCCEEEEEeeeCC------------------------
Q 012227          368 NAATCVCIWELQKMTLLWKEVDRMPNIWCLDFYGKHVRMTCLGNKGLLMLSLRSRQ------------------------  423 (468)
Q Consensus       368 ~~~~~i~Vw~ld~~~~~W~~v~~mp~~~~~~~~~~~~~~~~~~~~~~I~~~~~~~~------------------------  423 (468)
                        ....+++++|..+++|+++..|+........  .....++..++.||+..+...                        
T Consensus       183 --~~~~~~~~yd~~~~~W~~~~~~~~~~~p~~~--~~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~~~~~~~~~~~~~~~  258 (323)
T TIGR03548       183 --IAYTDGYKYSPKKNQWQKVADPTTDSEPISL--LGAASIKINESLLLCIGGFNKDVYNDAVIDLATMKDESLKGYKKE  258 (323)
T ss_pred             --ccccceEEEecCCCeeEECCCCCCCCCceec--cceeEEEECCCEEEEECCcCHHHHHHHHhhhhhccchhhhhhHHH
Confidence              1234678899999999998876421110000  001123334678877432210                        


Q ss_pred             -----------CCeEEEEECCCCcEEEccCCc
Q 012227          424 -----------MNRLVTYNVMSREWLKVPGCV  444 (468)
Q Consensus       424 -----------~~~l~~YD~~t~~w~~v~~~~  444 (468)
                                 ...+++||+.+++|+.++.+|
T Consensus       259 ~~~~~~~~~~~~~~v~~yd~~~~~W~~~~~~p  290 (323)
T TIGR03548       259 YFLKPPEWYNWNRKILIYNVRTGKWKSIGNSP  290 (323)
T ss_pred             HhCCCccccCcCceEEEEECCCCeeeEccccc
Confidence                       246999999999999998776

Members of this protein family show essentially full-length homology, cyclically permuted, to YjhT from Escherichia coli. YjhT was shown to act as a mutarotase for sialic acid, and by this ability to be able to act as a virulence factor. Members of the YjhT family (TIGR03547) and this cyclically-permuted family have multiple repeats of the beta-propeller-forming Kelch repeat.

>PLN02153 epithiospecifier protein

Probab=99.54  E-value=1.3e-12  Score=129.08  Aligned_cols=194  Identities=13%  Similarity=0.192  Sum_probs=128.1

Q ss_pred             cceecCCCCcccCCCC-CCCCCCc-EEEEeeecCceEEEEEcC-----CceEEEEcCCCCceEecCCC-----CcCCcce
Q 012227          183 GAMYDPSLKKWHHPTI-SSLPTKM-IILPVASAGGLVCFLDIG-----HRNFYVCNPLTQSFKELPAR-----SVKVWSR  250 (468)
Q Consensus       183 ~~~~dp~~~~w~~~~l-~~~p~~~-~~~~~~s~~GLl~~~~~~-----~~~~~V~NP~T~~~~~LP~~-----~~~~~~~  250 (468)
                      ...||+..++|...+. ...|... ....+++.++.|++.++.     ...++++||.|++|..++++     +..+...
T Consensus        52 ~~~yd~~~~~W~~~~~~~~~p~~~~~~~~~~~~~~~iyv~GG~~~~~~~~~v~~yd~~t~~W~~~~~~~~~~~p~~R~~~  131 (341)
T PLN02153         52 LYVFDFNTHTWSIAPANGDVPRISCLGVRMVAVGTKLYIFGGRDEKREFSDFYSYDTVKNEWTFLTKLDEEGGPEARTFH  131 (341)
T ss_pred             EEEEECCCCEEEEcCccCCCCCCccCceEEEEECCEEEEECCCCCCCccCcEEEEECCCCEEEEeccCCCCCCCCCceee
Confidence            5579999999986542 2233221 112255667777666542     13689999999999999875     2222211


Q ss_pred             eEEEEEEcCCCCCCCeEEEEEEecC------------cEEEEeCCCCCccCCCCCCCCcccCcccccccceEEECCEEEE
Q 012227          251 VAVGMTLNGNSTSSGYKILWVGCDG------------EYEIYDSLRNSWTRPGSMPSNIKLPVSLNFRSQAVSVDGILYF  318 (468)
Q Consensus       251 ~~~~~~~d~~~~~~~ykVv~v~~~~------------~v~vy~s~t~~W~~~~~~p~~~~~~~~~~~~~~~v~~~G~lY~  318 (468)
                        .+...+       -+|+++|+..            .+++||+.+++|+.++.+....    ..+.....+.++|++|+
T Consensus       132 --~~~~~~-------~~iyv~GG~~~~~~~~~~~~~~~v~~yd~~~~~W~~l~~~~~~~----~~r~~~~~~~~~~~iyv  198 (341)
T PLN02153        132 --SMASDE-------NHVYVFGGVSKGGLMKTPERFRTIEAYNIADGKWVQLPDPGENF----EKRGGAGFAVVQGKIWV  198 (341)
T ss_pred             --EEEEEC-------CEEEEECCccCCCccCCCcccceEEEEECCCCeEeeCCCCCCCC----CCCCcceEEEECCeEEE
Confidence              112222       4788887731            3889999999999887653211    11223456778999999


Q ss_pred             EEcC-------------CCeEEEEECCCCeEEEeec--CCCCCCCCceEEEECCeEEEEEEEeeC--------CccEEEE
Q 012227          319 MRSD-------------PEGIVSYNMVTGVWKQFII--PTPLHLNDHTLAECGGRIMLVGLLTKN--------AATCVCI  375 (468)
Q Consensus       319 ~~~~-------------~~~i~~fD~~~~~w~~i~~--P~p~~~~~~~l~~~~G~L~lv~~~~~~--------~~~~i~V  375 (468)
                      +++.             ...+.+||+.+++|..+..  .+|..+.....+.++++||++++....        ....-+|
T Consensus       199 ~GG~~~~~~~gG~~~~~~~~v~~yd~~~~~W~~~~~~g~~P~~r~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~~~~n~v  278 (341)
T PLN02153        199 VYGFATSILPGGKSDYESNAVQFFDPASGKWTEVETTGAKPSARSVFAHAVVGKYIIIFGGEVWPDLKGHLGPGTLSNEG  278 (341)
T ss_pred             EeccccccccCCccceecCceEEEEcCCCcEEeccccCCCCCCcceeeeEEECCEEEEECcccCCccccccccccccccE
Confidence            8642             1458999999999998742  134444556678889999999986321        1122389


Q ss_pred             EEEecCCCCeEEEE
Q 012227          376 WELQKMTLLWKEVD  389 (468)
Q Consensus       376 w~ld~~~~~W~~v~  389 (468)
                      |+||..+++|+++.
T Consensus       279 ~~~d~~~~~W~~~~  292 (341)
T PLN02153        279 YALDTETLVWEKLG  292 (341)
T ss_pred             EEEEcCccEEEecc
Confidence            99999999999986

>PRK14131 N-acetylneuraminic acid mutarotase; Provisional

Probab=99.51  E-value=8.1e-12  Score=125.06  Aligned_cols=243  Identities=15%  Similarity=0.137  Sum_probs=148.5

Q ss_pred             EEEEEeeCCCCCcceecCC--CCcccCCC-CCCCCCCcEEEEeeecCceEEEEEcCC-----------ceEEEEcCCCCc
Q 012227          171 WFYTITHENVNSGAMYDPS--LKKWHHPT-ISSLPTKMIILPVASAGGLVCFLDIGH-----------RNFYVCNPLTQS  236 (468)
Q Consensus       171 ~l~~~~~~~~~~~~~~dp~--~~~w~~~~-l~~~p~~~~~~~~~s~~GLl~~~~~~~-----------~~~~V~NP~T~~  236 (468)
                      .+|++..........||..  .++|..++ +|..+..  ...++..+|.|++.++..           ..+++|||.+++
T Consensus        40 ~iyv~gG~~~~~~~~~d~~~~~~~W~~l~~~p~~~r~--~~~~v~~~~~IYV~GG~~~~~~~~~~~~~~~v~~YD~~~n~  117 (376)
T PRK14131         40 TVYVGLGSAGTSWYKLDLNAPSKGWTKIAAFPGGPRE--QAVAAFIDGKLYVFGGIGKTNSEGSPQVFDDVYKYDPKTNS  117 (376)
T ss_pred             EEEEEeCCCCCeEEEEECCCCCCCeEECCcCCCCCcc--cceEEEECCEEEEEcCCCCCCCCCceeEcccEEEEeCCCCE
Confidence            3444433322334466764  46787543 2222222  222566778777765421           358899999999


Q ss_pred             eEecCCC-CcCCcceeEEEEE-EcCCCCCCCeEEEEEEec----------------------------------------
Q 012227          237 FKELPAR-SVKVWSRVAVGMT-LNGNSTSSGYKILWVGCD----------------------------------------  274 (468)
Q Consensus       237 ~~~LP~~-~~~~~~~~~~~~~-~d~~~~~~~ykVv~v~~~----------------------------------------  274 (468)
                      |..++++ +......  .+.. .+       -+|+++|+.                                        
T Consensus       118 W~~~~~~~p~~~~~~--~~~~~~~-------~~IYv~GG~~~~~~~~~~~d~~~~~~~~~~~~~i~~~~~~~~~~~~~~~  188 (376)
T PRK14131        118 WQKLDTRSPVGLAGH--VAVSLHN-------GKAYITGGVNKNIFDGYFEDLAAAGKDKTPKDKINDAYFDKKPEDYFFN  188 (376)
T ss_pred             EEeCCCCCCCcccce--EEEEeeC-------CEEEEECCCCHHHHHHHHhhhhhcccchhhhhhhHHHHhcCChhhcCcC
Confidence            9999863 2222111  2222 23       588988873                                        


Q ss_pred             CcEEEEeCCCCCccCCCCCCCCcccCcccccccceEEECCEEEEEEcCC------C--eEEEEECCCCeEEEeecCCCCC
Q 012227          275 GEYEIYDSLRNSWTRPGSMPSNIKLPVSLNFRSQAVSVDGILYFMRSDP------E--GIVSYNMVTGVWKQFIIPTPLH  346 (468)
Q Consensus       275 ~~v~vy~s~t~~W~~~~~~p~~~~~~~~~~~~~~~v~~~G~lY~~~~~~------~--~i~~fD~~~~~w~~i~~P~p~~  346 (468)
                      ..+++||+.+++|+.++.+|...      +.....+.++++||++++..      .  ....||+++++|..+ .++|..
T Consensus       189 ~~v~~YD~~t~~W~~~~~~p~~~------~~~~a~v~~~~~iYv~GG~~~~~~~~~~~~~~~~~~~~~~W~~~-~~~p~~  261 (376)
T PRK14131        189 KEVLSYDPSTNQWKNAGESPFLG------TAGSAVVIKGNKLWLINGEIKPGLRTDAVKQGKFTGNNLKWQKL-PDLPPA  261 (376)
T ss_pred             ceEEEEECCCCeeeECCcCCCCC------CCcceEEEECCEEEEEeeeECCCcCChhheEEEecCCCcceeec-CCCCCC
Confidence            24899999999999988776421      12345677899999998621      1  234568889999987 345432


Q ss_pred             CC--------CceEEEECCeEEEEEEEeeCC----------------ccEEEEEEEecCCCCeEEEEeeChhhhhcccCc
Q 012227          347 LN--------DHTLAECGGRIMLVGLLTKNA----------------ATCVCIWELQKMTLLWKEVDRMPNIWCLDFYGK  402 (468)
Q Consensus       347 ~~--------~~~l~~~~G~L~lv~~~~~~~----------------~~~i~Vw~ld~~~~~W~~v~~mp~~~~~~~~~~  402 (468)
                      +.        ....+..+|+||++++.....                .....+..++..+++|+.+..||..+..     
T Consensus       262 ~~~~~~~~~~~~~a~~~~~~iyv~GG~~~~~~~~~~~~~~~~~~~~~~~~~~~e~yd~~~~~W~~~~~lp~~r~~-----  336 (376)
T PRK14131        262 PGGSSQEGVAGAFAGYSNGVLLVAGGANFPGARENYQNGKLYAHEGLKKSWSDEIYALVNGKWQKVGELPQGLAY-----  336 (376)
T ss_pred             CcCCcCCccceEeceeECCEEEEeeccCCCCChhhhhcCCcccccCCcceeehheEEecCCcccccCcCCCCccc-----
Confidence            21        122467899999999864211                0011233456667899999988865432     


Q ss_pred             ceEEEEEecCCEEEEEeeeC----CCCeEEEEECCCCcEEE
Q 012227          403 HVRMTCLGNKGLLMLSLRSR----QMNRLVTYNVMSREWLK  439 (468)
Q Consensus       403 ~~~~~~~~~~~~I~~~~~~~----~~~~l~~YD~~t~~w~~  439 (468)
                         ..++..+|.||+..+..    ....+.+|+++.+.+..
T Consensus       337 ---~~av~~~~~iyv~GG~~~~~~~~~~v~~~~~~~~~~~~  374 (376)
T PRK14131        337 ---GVSVSWNNGVLLIGGETAGGKAVSDVTLLSWDGKKLTV  374 (376)
T ss_pred             ---eEEEEeCCEEEEEcCCCCCCcEeeeEEEEEEcCCEEEE
Confidence               23455678888854422    22478899999887764

>TIGR03547 muta_rot_YjhT mutatrotase, YjhT family

Probab=99.51  E-value=4.1e-12  Score=125.96  Aligned_cols=211  Identities=17%  Similarity=0.172  Sum_probs=132.4

Q ss_pred             cceecC--CCCcccCCCCCCCCC-CcEEEEeeecCceEEEEEcCC-----------ceEEEEcCCCCceEecCCCCcCCc
Q 012227          183 GAMYDP--SLKKWHHPTISSLPT-KMIILPVASAGGLVCFLDIGH-----------RNFYVCNPLTQSFKELPARSVKVW  248 (468)
Q Consensus       183 ~~~~dp--~~~~w~~~~l~~~p~-~~~~~~~~s~~GLl~~~~~~~-----------~~~~V~NP~T~~~~~LP~~~~~~~  248 (468)
                      ...||+  ..++|..+  +.+|. .+....+++.+|-|++.++..           ..+++|||.+++|..++.+ .++.
T Consensus        31 ~~~~d~~~~~~~W~~l--~~~p~~~R~~~~~~~~~~~iYv~GG~~~~~~~~~~~~~~~v~~Yd~~~~~W~~~~~~-~p~~  107 (346)
T TIGR03547        31 WYKLDLKKPSKGWQKI--ADFPGGPRNQAVAAAIDGKLYVFGGIGKANSEGSPQVFDDVYRYDPKKNSWQKLDTR-SPVG  107 (346)
T ss_pred             eEEEECCCCCCCceEC--CCCCCCCcccceEEEECCEEEEEeCCCCCCCCCcceecccEEEEECCCCEEecCCCC-CCCc
Confidence            445664  56788754  33331 222223667788887776431           3588999999999999742 2221


Q ss_pred             ceeEEEE-EEcCCCCCCCeEEEEEEec----------------------------------------CcEEEEeCCCCCc
Q 012227          249 SRVAVGM-TLNGNSTSSGYKILWVGCD----------------------------------------GEYEIYDSLRNSW  287 (468)
Q Consensus       249 ~~~~~~~-~~d~~~~~~~ykVv~v~~~----------------------------------------~~v~vy~s~t~~W  287 (468)
                      .....++ ..+       .||+++|+.                                        ..+++||+.+++|
T Consensus       108 ~~~~~~~~~~~-------g~IYviGG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~YDp~t~~W  180 (346)
T TIGR03547       108 LLGASGFSLHN-------GQAYFTGGVNKNIFDGYFADLSAADKDSEPKDKLIAAYFSQPPEDYFWNKNVLSYDPSTNQW  180 (346)
T ss_pred             ccceeEEEEeC-------CEEEEEcCcChHHHHHHHhhHhhcCccchhhhhhHHHHhCCChhHcCccceEEEEECCCCce
Confidence            1111222 223       588988763                                        3489999999999


Q ss_pred             cCCCCCCCCcccCcccccccceEEECCEEEEEEcCC------CeEEEEE--CCCCeEEEeecCCCCCC-------CCceE
Q 012227          288 TRPGSMPSNIKLPVSLNFRSQAVSVDGILYFMRSDP------EGIVSYN--MVTGVWKQFIIPTPLHL-------NDHTL  352 (468)
Q Consensus       288 ~~~~~~p~~~~~~~~~~~~~~~v~~~G~lY~~~~~~------~~i~~fD--~~~~~w~~i~~P~p~~~-------~~~~l  352 (468)
                      +.++.||...      +.....+.++|+||++++..      ..+..||  +.+++|..+ .+++..+       ....+
T Consensus       181 ~~~~~~p~~~------r~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~y~~~~~~~~W~~~-~~m~~~r~~~~~~~~~~~a  253 (346)
T TIGR03547       181 RNLGENPFLG------TAGSAIVHKGNKLLLINGEIKPGLRTAEVKQYLFTGGKLEWNKL-PPLPPPKSSSQEGLAGAFA  253 (346)
T ss_pred             eECccCCCCc------CCCceEEEECCEEEEEeeeeCCCccchheEEEEecCCCceeeec-CCCCCCCCCccccccEEee
Confidence            9998876421      12345667899999998631      1244455  567799987 4554322       12336


Q ss_pred             EEECCeEEEEEEEeeCC------------------ccEEEEEEEecCCCCeEEEEeeChhhhhcccCcceEEEEEecCCE
Q 012227          353 AECGGRIMLVGLLTKNA------------------ATCVCIWELQKMTLLWKEVDRMPNIWCLDFYGKHVRMTCLGNKGL  414 (468)
Q Consensus       353 ~~~~G~L~lv~~~~~~~------------------~~~i~Vw~ld~~~~~W~~v~~mp~~~~~~~~~~~~~~~~~~~~~~  414 (468)
                      ++.+|+||++++.....                  ...+++|  +..+++|+.+..||..+..        ..++..+|.
T Consensus       254 ~~~~~~Iyv~GG~~~~~~~~~~~~~~~~~~~~~~~~~~~e~y--d~~~~~W~~~~~lp~~~~~--------~~~~~~~~~  323 (346)
T TIGR03547       254 GISNGVLLVAGGANFPGAQENYKNGKLYAHEGLIKAWSSEVY--ALDNGKWSKVGKLPQGLAY--------GVSVSWNNG  323 (346)
T ss_pred             eEECCEEEEeecCCCCCchhhhhcCCccccCCCCceeEeeEE--EecCCcccccCCCCCCcee--------eEEEEcCCE
Confidence            77899999999864210                  1245566  5556899999999865421        234446888


Q ss_pred             EEEEee
Q 012227          415 LMLSLR  420 (468)
Q Consensus       415 I~~~~~  420 (468)
                      ||+..+
T Consensus       324 iyv~GG  329 (346)
T TIGR03547       324 VLLIGG  329 (346)
T ss_pred             EEEEec
Confidence            887543

Members of this protein family contain multiple copies of the beta-propeller-forming Kelch repeat. All are full-length homologs to YjhT of Escherichia coli, which has been identified as a mutarotase for sialic acid. This protein improves bacterial ability to obtain host sialic acid, and thus serves as a virulence factor. Some bacteria carry what appears to be a cyclically permuted homolog of this protein.

>PLN02193 nitrile-specifier protein

Probab=99.42  E-value=5.3e-11  Score=122.45  Aligned_cols=197  Identities=15%  Similarity=0.210  Sum_probs=131.3

Q ss_pred             cceecCCCCcccCCCCC-CCCCC-cEEEEeeecCceEEEEEcC-----CceEEEEcCCCCceEecCCC---CcCCcceeE
Q 012227          183 GAMYDPSLKKWHHPTIS-SLPTK-MIILPVASAGGLVCFLDIG-----HRNFYVCNPLTQSFKELPAR---SVKVWSRVA  252 (468)
Q Consensus       183 ~~~~dp~~~~w~~~~l~-~~p~~-~~~~~~~s~~GLl~~~~~~-----~~~~~V~NP~T~~~~~LP~~---~~~~~~~~~  252 (468)
                      ...||+..++|..++.. ..|.. .....++..++.|++.++.     ...++++||.|++|..++++   +.++.... 
T Consensus       195 v~~yD~~~~~W~~~~~~g~~P~~~~~~~~~v~~~~~lYvfGG~~~~~~~ndv~~yD~~t~~W~~l~~~~~~P~~R~~h~-  273 (470)
T PLN02193        195 LYVFDLETRTWSISPATGDVPHLSCLGVRMVSIGSTLYVFGGRDASRQYNGFYSFDTTTNEWKLLTPVEEGPTPRSFHS-  273 (470)
T ss_pred             EEEEECCCCEEEeCCCCCCCCCCcccceEEEEECCEEEEECCCCCCCCCccEEEEECCCCEEEEcCcCCCCCCCccceE-
Confidence            45789999999865432 23321 1112245567777776542     24699999999999999876   23332222 


Q ss_pred             EEEEEcCCCCCCCeEEEEEEecC------cEEEEeCCCCCccCCCCCCCCcccCcccccccceEEECCEEEEEEcCC---
Q 012227          253 VGMTLNGNSTSSGYKILWVGCDG------EYEIYDSLRNSWTRPGSMPSNIKLPVSLNFRSQAVSVDGILYFMRSDP---  323 (468)
Q Consensus       253 ~~~~~d~~~~~~~ykVv~v~~~~------~v~vy~s~t~~W~~~~~~p~~~~~~~~~~~~~~~v~~~G~lY~~~~~~---  323 (468)
                       ....+       -+|+++|+..      .+++||+.+++|+.++... ..  + ..+.....++++|++|++++..   
T Consensus       274 -~~~~~-------~~iYv~GG~~~~~~~~~~~~yd~~t~~W~~~~~~~-~~--~-~~R~~~~~~~~~gkiyviGG~~g~~  341 (470)
T PLN02193        274 -MAADE-------ENVYVFGGVSATARLKTLDSYNIVDKKWFHCSTPG-DS--F-SIRGGAGLEVVQGKVWVVYGFNGCE  341 (470)
T ss_pred             -EEEEC-------CEEEEECCCCCCCCcceEEEEECCCCEEEeCCCCC-CC--C-CCCCCcEEEEECCcEEEEECCCCCc
Confidence             11222       4789888742      3899999999999875421 10  0 1123455677899999998632   


Q ss_pred             -CeEEEEECCCCeEEEeec--CCCCCCCCceEEEECCeEEEEEEEeeCC--------ccEEEEEEEecCCCCeEEEEeeC
Q 012227          324 -EGIVSYNMVTGVWKQFII--PTPLHLNDHTLAECGGRIMLVGLLTKNA--------ATCVCIWELQKMTLLWKEVDRMP  392 (468)
Q Consensus       324 -~~i~~fD~~~~~w~~i~~--P~p~~~~~~~l~~~~G~L~lv~~~~~~~--------~~~i~Vw~ld~~~~~W~~v~~mp  392 (468)
                       ..+.+||+.+++|+.+..  +.|..+.....+.++++||++++.....        ...-++|.||..+++|+++..++
T Consensus       342 ~~dv~~yD~~t~~W~~~~~~g~~P~~R~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~~~~ndv~~~D~~t~~W~~~~~~~  421 (470)
T PLN02193        342 VDDVHYYDPVQDKWTQVETFGVRPSERSVFASAAVGKHIVIFGGEIAMDPLAHVGPGQLTDGTFALDTETLQWERLDKFG  421 (470)
T ss_pred             cCceEEEECCCCEEEEeccCCCCCCCcceeEEEEECCEEEEECCccCCccccccCccceeccEEEEEcCcCEEEEcccCC
Confidence             469999999999998742  1244455567788999999999864311        11236999999999999987665

>TIGR03548 mutarot_permut cyclically-permuted mutatrotase family protein

Probab=99.34  E-value=5e-11  Score=117.01  Aligned_cols=174  Identities=20%  Similarity=0.191  Sum_probs=114.2

Q ss_pred             cceecCCCCccc--CCCCCCCCCCcEEEEeeecCceEEEEEcC-----CceEEEEcCCCCceEecCCCCc-CCcceeEEE
Q 012227          183 GAMYDPSLKKWH--HPTISSLPTKMIILPVASAGGLVCFLDIG-----HRNFYVCNPLTQSFKELPARSV-KVWSRVAVG  254 (468)
Q Consensus       183 ~~~~dp~~~~w~--~~~l~~~p~~~~~~~~~s~~GLl~~~~~~-----~~~~~V~NP~T~~~~~LP~~~~-~~~~~~~~~  254 (468)
                      ...||+..++|.  -..++.+|........+..+|.|++.++.     ...++++||.|++|..+++++. .+...  ..
T Consensus        90 v~~~d~~~~~w~~~~~~~~~lp~~~~~~~~~~~~~~iYv~GG~~~~~~~~~v~~yd~~~~~W~~~~~~p~~~r~~~--~~  167 (323)
T TIGR03548        90 VYRITLDESKEELICETIGNLPFTFENGSACYKDGTLYVGGGNRNGKPSNKSYLFNLETQEWFELPDFPGEPRVQP--VC  167 (323)
T ss_pred             EEEEEEcCCceeeeeeEcCCCCcCccCceEEEECCEEEEEeCcCCCccCceEEEEcCCCCCeeECCCCCCCCCCcc--eE
Confidence            446788888872  12344555443222256678888777542     2469999999999999987643 22222  22


Q ss_pred             EEEcCCCCCCCeEEEEEEecC-----cEEEEeCCCCCccCCCCCCCCcccCcccccccceEEECCEEEEEEcCC------
Q 012227          255 MTLNGNSTSSGYKILWVGCDG-----EYEIYDSLRNSWTRPGSMPSNIKLPVSLNFRSQAVSVDGILYFMRSDP------  323 (468)
Q Consensus       255 ~~~d~~~~~~~ykVv~v~~~~-----~v~vy~s~t~~W~~~~~~p~~~~~~~~~~~~~~~v~~~G~lY~~~~~~------  323 (468)
                      ...+       -+|+++|+..     .+++||+.+++|+.++.++.. ..|.........++.+++||++++..      
T Consensus       168 ~~~~-------~~iYv~GG~~~~~~~~~~~yd~~~~~W~~~~~~~~~-~~p~~~~~~~~~~~~~~~iyv~GG~~~~~~~~  239 (323)
T TIGR03548       168 VKLQ-------NELYVFGGGSNIAYTDGYKYSPKKNQWQKVADPTTD-SEPISLLGAASIKINESLLLCIGGFNKDVYND  239 (323)
T ss_pred             EEEC-------CEEEEEcCCCCccccceEEEecCCCeeEECCCCCCC-CCceeccceeEEEECCCEEEEECCcCHHHHHH
Confidence            2233       4899998743     378999999999998776421 11211111122334579999998632      


Q ss_pred             -------------------------------CeEEEEECCCCeEEEeecCCC-CCCCCceEEEECCeEEEEEEEee
Q 012227          324 -------------------------------EGIVSYNMVTGVWKQFIIPTP-LHLNDHTLAECGGRIMLVGLLTK  367 (468)
Q Consensus       324 -------------------------------~~i~~fD~~~~~w~~i~~P~p-~~~~~~~l~~~~G~L~lv~~~~~  367 (468)
                                                     +.+++||+.+++|+.+. ++| ..+....++..+|+||++++..+
T Consensus       240 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~yd~~~~~W~~~~-~~p~~~r~~~~~~~~~~~iyv~GG~~~  314 (323)
T TIGR03548       240 AVIDLATMKDESLKGYKKEYFLKPPEWYNWNRKILIYNVRTGKWKSIG-NSPFFARCGAALLLTGNNIFSINGELK  314 (323)
T ss_pred             HHhhhhhccchhhhhhHHHHhCCCccccCcCceEEEEECCCCeeeEcc-cccccccCchheEEECCEEEEEecccc
Confidence                                           46999999999999874 444 34556678999999999998654

Members of this protein family show essentially full-length homology, cyclically permuted, to YjhT from Escherichia coli. YjhT was shown to act as a mutarotase for sialic acid, and by this ability to be able to act as a virulence factor. Members of the YjhT family (TIGR03547) and this cyclically-permuted family have multiple repeats of the beta-propeller-forming Kelch repeat.

>PF08268 FBA_3: F-box associated domain; InterPro: IPR013187 This domain occurs in a diverse superfamily of genes in plants

Probab=99.18  E-value=9e-10  Score=92.73  Aligned_cols=110  Identities=18%  Similarity=0.384  Sum_probs=76.6

Q ss_pred             eEEECCEEEEEEcC----CCeEEEEECCCCeEEEeecC--CCCCCCCceEEEECCeEEEEEEEeeCCccEEEEEEEecC-
Q 012227          309 AVSVDGILYFMRSD----PEGIVSYNMVTGVWKQFIIP--TPLHLNDHTLAECGGRIMLVGLLTKNAATCVCIWELQKM-  381 (468)
Q Consensus       309 ~v~~~G~lY~~~~~----~~~i~~fD~~~~~w~~i~~P--~p~~~~~~~l~~~~G~L~lv~~~~~~~~~~i~Vw~ld~~-  381 (468)
                      ++++||.+||++..    ...|++||+.+|+|+.+++|  .........|++++|+|+++..........++||.|++. 
T Consensus         1 gicinGvly~~a~~~~~~~~~IvsFDv~~E~f~~i~~P~~~~~~~~~~~L~~~~G~L~~v~~~~~~~~~~~~iWvLeD~~   80 (129)
T PF08268_consen    1 GICINGVLYWLAWSEDSDNNVIVSFDVRSEKFRFIKLPEDPYSSDCSSTLIEYKGKLALVSYNDQGEPDSIDIWVLEDYE   80 (129)
T ss_pred             CEEECcEEEeEEEECCCCCcEEEEEEcCCceEEEEEeeeeeccccCccEEEEeCCeEEEEEecCCCCcceEEEEEeeccc
Confidence            46799999999864    46899999999999999888  333345678999999999987654322457999999976 


Q ss_pred             CCCeEEEEe-eChhhhhcccCcceEEEEEecCCEEEEE
Q 012227          382 TLLWKEVDR-MPNIWCLDFYGKHVRMTCLGNKGLLMLS  418 (468)
Q Consensus       382 ~~~W~~v~~-mp~~~~~~~~~~~~~~~~~~~~~~I~~~  418 (468)
                      +.+|.+... +|........+....+..+..+|.|++.
T Consensus        81 k~~Wsk~~~~lp~~~~~~~~~~~~~~~g~~~~Geiv~~  118 (129)
T PF08268_consen   81 KQEWSKKHIVLPPSWQHFVHDCDFSFVGVTDTGEIVFA  118 (129)
T ss_pred             cceEEEEEEECChHHhcccCCcEEEEEEEcCCCEEEEE
Confidence            579999865 4443322111122234444445665553

Most examples are found C-terminal to an F-box (IPR001810 from INTERPRO), a 60 amino acid motif involved in ubiquitination of target proteins to mark them for degradation. Two-hybid experiments support the idea that most members are interchangeable F-box subunits of SCF E3 complexes []. Some members have two copies of this domain.

>PF07734 FBA_1: F-box associated; InterPro: IPR006527 This domain occurs in a diverse superfamily of genes in plants

Probab=98.87  E-value=6.8e-08  Score=84.88  Aligned_cols=131  Identities=14%  Similarity=0.211  Sum_probs=83.2

Q ss_pred             eEEECCEEEEEEcCC---C--eEEEEECCCCeE-EEeecCCCCC--CCCceEEE-ECCeEEEEEEEeeCCccEEEEEEEe
Q 012227          309 AVSVDGILYFMRSDP---E--GIVSYNMVTGVW-KQFIIPTPLH--LNDHTLAE-CGGRIMLVGLLTKNAATCVCIWELQ  379 (468)
Q Consensus       309 ~v~~~G~lY~~~~~~---~--~i~~fD~~~~~w-~~i~~P~p~~--~~~~~l~~-~~G~L~lv~~~~~~~~~~i~Vw~ld  379 (468)
                      +|++||.+||++...   .  .|++||+.+|+| ..+++|....  .....|.+ .+|+|+++...  .....++||.++
T Consensus         1 gV~vnG~~hW~~~~~~~~~~~~IlsFDl~~E~F~~~~~lP~~~~~~~~~~~L~~v~~~~L~~~~~~--~~~~~~~IWvm~   78 (164)
T PF07734_consen    1 GVFVNGALHWLAYDENNDEKDFILSFDLSTEKFGRSLPLPFCNDDDDDSVSLSVVRGDCLCVLYQC--DETSKIEIWVMK   78 (164)
T ss_pred             CEEECCEEEeeEEecCCCCceEEEEEeccccccCCEECCCCccCccCCEEEEEEecCCEEEEEEec--cCCccEEEEEEe
Confidence            578999999998632   1  699999999999 7765554433  12345544 37899988542  223469999999


Q ss_pred             cC---CCCeEEEEeeChhhhhcccCc-ceEEEEEecCCEEEEEeeeCCC----CeEEEEECCCCcEEEccC
Q 012227          380 KM---TLLWKEVDRMPNIWCLDFYGK-HVRMTCLGNKGLLMLSLRSRQM----NRLVTYNVMSREWLKVPG  442 (468)
Q Consensus       380 ~~---~~~W~~v~~mp~~~~~~~~~~-~~~~~~~~~~~~I~~~~~~~~~----~~l~~YD~~t~~w~~v~~  442 (468)
                      +.   ..+|++...++.......... ......+..++.++++......    ..++.|+ +++..+++..
T Consensus        79 ~~~~~~~SWtK~~~i~~~~~~~~~~~~~~~~~~i~~~~~vlv~~~~~~~~~~~~~i~i~g-~~~~~~~~~~  148 (164)
T PF07734_consen   79 KYGYGKESWTKLFTIDLPPLPSLFFHFRNPSFFIDEEKKVLVCCDKETQREEKNKIYIVG-EDGKFIEVDI  148 (164)
T ss_pred             eeccCcceEEEEEEEecCCCCCcccccccceEEEeCCCeEEEEEcCCCCccceeEEEEEc-CCCEEEEccc
Confidence            53   579999988864332221110 0112233445566665443322    5688888 7788887754

Most examples are found C-terminal to an F-box (IPR001810 from INTERPRO), a 60 amino acid motif involved in ubiquitination of target proteins to mark them for degradation. Two-hybid experiments support the idea that most members are interchangeable F-box subunits of SCF E3 complexes []. Some members have two copies of this domain.

>KOG4693 consensus Uncharacterized conserved protein, contains kelch repeat [General function prediction only]

Probab=98.86  E-value=1.2e-07  Score=85.71  Aligned_cols=205  Identities=16%  Similarity=0.232  Sum_probs=129.9

Q ss_pred             eEEEEcCCCCceEecCCCC--cC--------CcceeEE-EEEEcCCCCCCCeEEEEEEecCc-------EEEEeCCCCCc
Q 012227          226 NFYVCNPLTQSFKELPARS--VK--------VWSRVAV-GMTLNGNSTSSGYKILWVGCDGE-------YEIYDSLRNSW  287 (468)
Q Consensus       226 ~~~V~NP~T~~~~~LP~~~--~~--------~~~~~~~-~~~~d~~~~~~~ykVv~v~~~~~-------v~vy~s~t~~W  287 (468)
                      .+.++|..+-+|..+|+--  ..        .+.++.. .+.++       -|+++-|+.++       ...||++++.|
T Consensus        45 DVH~lNa~~~RWtk~pp~~~ka~i~~~yp~VPyqRYGHtvV~y~-------d~~yvWGGRND~egaCN~Ly~fDp~t~~W  117 (392)
T KOG4693|consen   45 DVHVLNAENYRWTKMPPGITKATIESPYPAVPYQRYGHTVVEYQ-------DKAYVWGGRNDDEGACNLLYEFDPETNVW  117 (392)
T ss_pred             eeEEeeccceeEEecCcccccccccCCCCccchhhcCceEEEEc-------ceEEEEcCccCcccccceeeeeccccccc
Confidence            5899999999999999831  00        0111111 11222       37777776442       68899999999


Q ss_pred             cCCCC---CCCCcccCcccccccceEEECCEEEEEEcC-------CCeEEEEECCCCeEEEeecC--CCCCCCCceEEEE
Q 012227          288 TRPGS---MPSNIKLPVSLNFRSQAVSVDGILYFMRSD-------PEGIVSYNMVTGVWKQFIIP--TPLHLNDHTLAEC  355 (468)
Q Consensus       288 ~~~~~---~p~~~~~~~~~~~~~~~v~~~G~lY~~~~~-------~~~i~~fD~~~~~w~~i~~P--~p~~~~~~~l~~~  355 (468)
                      .....   +|..       +-.+.+++.+..+|..++.       ...+.++|++|.+|+.+..-  +|..+..+...++
T Consensus       118 ~~p~v~G~vPga-------RDGHsAcV~gn~MyiFGGye~~a~~FS~d~h~ld~~TmtWr~~~Tkg~PprwRDFH~a~~~  190 (392)
T KOG4693|consen  118 KKPEVEGFVPGA-------RDGHSACVWGNQMYIFGGYEEDAQRFSQDTHVLDFATMTWREMHTKGDPPRWRDFHTASVI  190 (392)
T ss_pred             cccceeeecCCc-------cCCceeeEECcEEEEecChHHHHHhhhccceeEeccceeeeehhccCCCchhhhhhhhhhc
Confidence            87632   3322       2246678899999999862       13588899999999998542  2344556677788


Q ss_pred             CCeEEEEEEEeeC--------CccEEEEEEEecCCCCeEEEEeeChhhhhcccCcceEEEEEecCCEEEEEeeeC-----
Q 012227          356 GGRIMLVGLLTKN--------AATCVCIWELQKMTLLWKEVDRMPNIWCLDFYGKHVRMTCLGNKGLLMLSLRSR-----  422 (468)
Q Consensus       356 ~G~L~lv~~~~~~--------~~~~i~Vw~ld~~~~~W~~v~~mp~~~~~~~~~~~~~~~~~~~~~~I~~~~~~~-----  422 (468)
                      +|..|+.++..+.        +..+-+|-.||..++.|.....-+..  .   +.......+.-++++|+..+..     
T Consensus       191 ~~~MYiFGGR~D~~gpfHs~~e~Yc~~i~~ld~~T~aW~r~p~~~~~--P---~GRRSHS~fvYng~~Y~FGGYng~ln~  265 (392)
T KOG4693|consen  191 DGMMYIFGGRSDESGPFHSIHEQYCDTIMALDLATGAWTRTPENTMK--P---GGRRSHSTFVYNGKMYMFGGYNGTLNV  265 (392)
T ss_pred             cceEEEeccccccCCCccchhhhhcceeEEEeccccccccCCCCCcC--C---CcccccceEEEcceEEEecccchhhhh
Confidence            9999999986541        12334666778778999875322111  0   0001122334467777632211     


Q ss_pred             CCCeEEEEECCCCcEEEcc---CCccCCCC
Q 012227          423 QMNRLVTYNVMSREWLKVP---GCVVPRGR  449 (468)
Q Consensus       423 ~~~~l~~YD~~t~~w~~v~---~~~~~~~~  449 (468)
                      ..+.+++||+.+..|..+.   ..|.++.|
T Consensus       266 HfndLy~FdP~t~~W~~I~~~Gk~P~aRRR  295 (392)
T KOG4693|consen  266 HFNDLYCFDPKTSMWSVISVRGKYPSARRR  295 (392)
T ss_pred             hhcceeecccccchheeeeccCCCCCcccc
Confidence            2357999999999999994   34555544

>PF12937 F-box-like: F-box-like; PDB: 1P22_A 2OVP_B 2OVR_B 2OVQ_B 1FS1_A 1FS2_C 1FQV_I 1LDK_E 2AST_B 2ASS_B

Probab=98.80  E-value=3.6e-09  Score=71.94  Aligned_cols=43  Identities=16%  Similarity=0.512  Sum_probs=37.1

Q ss_pred             hccChHHHHHHHHhcCChhhHHHHhhcccchhhhccCcchhhh
Q 012227          119 WKEFPEDLYEAVIARLPIATFFRFRSVCQKWNSLLKSHSFSQH  161 (468)
Q Consensus       119 w~~LP~DLl~~IL~RLp~~~l~r~r~VCK~Wr~li~s~~F~~~  161 (468)
                      |..||+|++.+||..|+..|+.+++.|||+|+.++.++.+.+.
T Consensus         1 i~~LP~Eil~~If~~L~~~dl~~~~~vcr~w~~~~~~~~lW~~   43 (47)
T PF12937_consen    1 ISSLPDEILLEIFSYLDPRDLLRLSLVCRRWRRIANDNSLWRR   43 (47)
T ss_dssp             CCCS-HHHHHHHHTTS-HHHHHHHTTSSHHHHHHHTCCCHHHH
T ss_pred             ChHhHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHCChhhhhh
Confidence            5789999999999999999999999999999999988766553

>KOG4693 consensus Uncharacterized conserved protein, contains kelch repeat [General function prediction only]

Probab=98.80  E-value=2.3e-07  Score=83.85  Aligned_cols=189  Identities=14%  Similarity=0.169  Sum_probs=117.2

Q ss_pred             ecCceEEEEEcCC------ceEEEEcCCCCceEecCCC---CcCCcceeEEEEEEcCCCCCCCeEEEEEEec--------
Q 012227          212 SAGGLVCFLDIGH------RNFYVCNPLTQSFKELPAR---SVKVWSRVAVGMTLNGNSTSSGYKILWVGCD--------  274 (468)
Q Consensus       212 s~~GLl~~~~~~~------~~~~V~NP~T~~~~~LP~~---~~~~~~~~~~~~~~d~~~~~~~ykVv~v~~~--------  274 (468)
                      .-.+-+++.++..      ..++.+||-|.+|...--.   +-.+..+.++..+         -..+++|+.        
T Consensus        86 ~y~d~~yvWGGRND~egaCN~Ly~fDp~t~~W~~p~v~G~vPgaRDGHsAcV~g---------n~MyiFGGye~~a~~FS  156 (392)
T KOG4693|consen   86 EYQDKAYVWGGRNDDEGACNLLYEFDPETNVWKKPEVEGFVPGARDGHSACVWG---------NQMYIFGGYEEDAQRFS  156 (392)
T ss_pred             EEcceEEEEcCccCcccccceeeeeccccccccccceeeecCCccCCceeeEEC---------cEEEEecChHHHHHhhh
Confidence            3355555554332      3588999999999863221   1122222222221         134445542        


Q ss_pred             CcEEEEeCCCCCccCCCCCCCCcccCcccccccceEEECCEEEEEEcC--------------CCeEEEEECCCCeEEEee
Q 012227          275 GEYEIYDSLRNSWTRPGSMPSNIKLPVSLNFRSQAVSVDGILYFMRSD--------------PEGIVSYNMVTGVWKQFI  340 (468)
Q Consensus       275 ~~v~vy~s~t~~W~~~~~~p~~~~~~~~~~~~~~~v~~~G~lY~~~~~--------------~~~i~~fD~~~~~w~~i~  340 (468)
                      .++.++|..|-+|+.+.....    |...+-.+.++.++|.+|..++.              .+.|+++|++|+.|...+
T Consensus       157 ~d~h~ld~~TmtWr~~~Tkg~----PprwRDFH~a~~~~~~MYiFGGR~D~~gpfHs~~e~Yc~~i~~ld~~T~aW~r~p  232 (392)
T KOG4693|consen  157 QDTHVLDFATMTWREMHTKGD----PPRWRDFHTASVIDGMMYIFGGRSDESGPFHSIHEQYCDTIMALDLATGAWTRTP  232 (392)
T ss_pred             ccceeEeccceeeeehhccCC----CchhhhhhhhhhccceEEEeccccccCCCccchhhhhcceeEEEeccccccccCC
Confidence            238899999999998854221    11122235667789999999862              146999999999998641


Q ss_pred             c-C-CCCCCCCceEEEECCeEEEEEEEee-CCccEEEEEEEecCCCCeEEEEeeChhhhhcccCcceEEEEEecCCEEEE
Q 012227          341 I-P-TPLHLNDHTLAECGGRIMLVGLLTK-NAATCVCIWELQKMTLLWKEVDRMPNIWCLDFYGKHVRMTCLGNKGLLML  417 (468)
Q Consensus       341 ~-P-~p~~~~~~~l~~~~G~L~lv~~~~~-~~~~~i~Vw~ld~~~~~W~~v~~mp~~~~~~~~~~~~~~~~~~~~~~I~~  417 (468)
                      . + .|..+..+..-+++|++|+.+++.. -+...-++|.+|+.+..|+++..-+..-+.     ..+-.|+..++++|+
T Consensus       233 ~~~~~P~GRRSHS~fvYng~~Y~FGGYng~ln~HfndLy~FdP~t~~W~~I~~~Gk~P~a-----RRRqC~~v~g~kv~L  307 (392)
T KOG4693|consen  233 ENTMKPGGRRSHSTFVYNGKMYMFGGYNGTLNVHFNDLYCFDPKTSMWSVISVRGKYPSA-----RRRQCSVVSGGKVYL  307 (392)
T ss_pred             CCCcCCCcccccceEEEcceEEEecccchhhhhhhcceeecccccchheeeeccCCCCCc-----ccceeEEEECCEEEE
Confidence            1 1 1445556777899999999998764 233455899999999999998644322111     012234445788877


Q ss_pred             E
Q 012227          418 S  418 (468)
Q Consensus       418 ~  418 (468)
                      .
T Consensus       308 F  308 (392)
T KOG4693|consen  308 F  308 (392)
T ss_pred             e
Confidence            4

>KOG0379 consensus Kelch repeat-containing proteins [General function prediction only]

Probab=98.70  E-value=9.6e-07  Score=91.00  Aligned_cols=201  Identities=15%  Similarity=0.177  Sum_probs=133.7

Q ss_pred             eEEEEcCCCCceEecCCCC---cCCcceeEEEEEEcCCCCCCCeEEEEEEecC-------cEEEEeCCCCCccCCCCCCC
Q 012227          226 NFYVCNPLTQSFKELPARS---VKVWSRVAVGMTLNGNSTSSGYKILWVGCDG-------EYEIYDSLRNSWTRPGSMPS  295 (468)
Q Consensus       226 ~~~V~NP~T~~~~~LP~~~---~~~~~~~~~~~~~d~~~~~~~ykVv~v~~~~-------~v~vy~s~t~~W~~~~~~p~  295 (468)
                      .++++|--+..|.......   ..+.....+..  +       -+++++|+..       ++..||..+++|+.+.....
T Consensus        89 dl~~~d~~~~~w~~~~~~g~~p~~r~g~~~~~~--~-------~~l~lfGG~~~~~~~~~~l~~~d~~t~~W~~l~~~~~  159 (482)
T KOG0379|consen   89 DLYVLDLESQLWTKPAATGDEPSPRYGHSLSAV--G-------DKLYLFGGTDKKYRNLNELHSLDLSTRTWSLLSPTGD  159 (482)
T ss_pred             eeEEeecCCcccccccccCCCCCcccceeEEEE--C-------CeEEEEccccCCCCChhheEeccCCCCcEEEecCcCC
Confidence            4999999999998766542   12222221111  1       3778888754       59999999999997754322


Q ss_pred             CcccCcccccccceEEECCEEEEEEcC------CCeEEEEECCCCeEEEeecC--CCCCCCCceEEEECCeEEEEEEEee
Q 012227          296 NIKLPVSLNFRSQAVSVDGILYFMRSD------PEGIVSYNMVTGVWKQFIIP--TPLHLNDHTLAECGGRIMLVGLLTK  367 (468)
Q Consensus       296 ~~~~~~~~~~~~~~v~~~G~lY~~~~~------~~~i~~fD~~~~~w~~i~~P--~p~~~~~~~l~~~~G~L~lv~~~~~  367 (468)
                         .| ..+..+.++.++.++|+.++.      .+.+.+||+++.+|..+...  .|..+.++.+++.+++++++++...
T Consensus       160 ---~P-~~r~~Hs~~~~g~~l~vfGG~~~~~~~~ndl~i~d~~~~~W~~~~~~g~~P~pR~gH~~~~~~~~~~v~gG~~~  235 (482)
T KOG0379|consen  160 ---PP-PPRAGHSATVVGTKLVVFGGIGGTGDSLNDLHIYDLETSTWSELDTQGEAPSPRYGHAMVVVGNKLLVFGGGDD  235 (482)
T ss_pred             ---CC-CCcccceEEEECCEEEEECCccCcccceeeeeeeccccccceecccCCCCCCCCCCceEEEECCeEEEEecccc
Confidence               11 113467788889999999862      24688999999999998554  3455677889999999999998764


Q ss_pred             CCccEEEEEEEecCCCCeEEEEeeChhhhhcccCcceEEEEEecCCEEEEEeeeC-----CCCeEEEEECCCCcEEEccC
Q 012227          368 NAATCVCIWELQKMTLLWKEVDRMPNIWCLDFYGKHVRMTCLGNKGLLMLSLRSR-----QMNRLVTYNVMSREWLKVPG  442 (468)
Q Consensus       368 ~~~~~i~Vw~ld~~~~~W~~v~~mp~~~~~~~~~~~~~~~~~~~~~~I~~~~~~~-----~~~~l~~YD~~t~~w~~v~~  442 (468)
                      .+...-++|.||-.+.+|.++...+......+.   ....  ..++.+++..+..     ....++.||++++.|.++..
T Consensus       236 ~~~~l~D~~~ldl~~~~W~~~~~~g~~p~~R~~---h~~~--~~~~~~~l~gG~~~~~~~~l~~~~~l~~~~~~w~~~~~  310 (482)
T KOG0379|consen  236 GDVYLNDVHILDLSTWEWKLLPTGGDLPSPRSG---HSLT--VSGDHLLLFGGGTDPKQEPLGDLYGLDLETLVWSKVES  310 (482)
T ss_pred             CCceecceEeeecccceeeeccccCCCCCCcce---eeeE--EECCEEEEEcCCcccccccccccccccccccceeeeec
Confidence            444556899999988899866444322111110   0122  2345555432221     24568999999999999976


Q ss_pred             Cc
Q 012227          443 CV  444 (468)
Q Consensus       443 ~~  444 (468)
                      ..
T Consensus       311 ~~  312 (482)
T KOG0379|consen  311 VG  312 (482)
T ss_pred             cc
Confidence            55

>PF00646 F-box: F-box domain; InterPro: IPR001810 The F-box domain was first described as a sequence motif found in cyclin-F that interacts with the protein SKP1 [, ]

Probab=98.64  E-value=1.7e-08  Score=68.96  Aligned_cols=44  Identities=18%  Similarity=0.495  Sum_probs=37.4

Q ss_pred             hhccChHHHHHHHHhcCChhhHHHHhhcccchhhhccCcchhhh
Q 012227          118 IWKEFPEDLYEAVIARLPIATFFRFRSVCQKWNSLLKSHSFSQH  161 (468)
Q Consensus       118 ~w~~LP~DLl~~IL~RLp~~~l~r~r~VCK~Wr~li~s~~F~~~  161 (468)
                      .|.+||+|++.+||.+|+..++.+++.|||+|++++.+..+...
T Consensus         2 ~~~~LP~~il~~Il~~l~~~~~~~l~~vsk~~~~~~~~~~~~~~   45 (48)
T PF00646_consen    2 PLSDLPDEILQEILSYLDPKDLLRLSLVSKRWRSLVDSPRLWKK   45 (48)
T ss_dssp             HHHHS-HHHHHHHHHTS-HHHHHHHCTT-HHHHHHHTTHHHHHH
T ss_pred             CHHHCCHHHHHHHHHHCcHHHHHHHHHHhhHHHHHHcCCCccHH
Confidence            47889999999999999999999999999999999999877653

This relatively conserved structural motif is present in numerous proteins and serves as a link between a target protein and a ubiquitin-conjugating enzyme. The SCF complex (e.g., Skp1-Cullin-F-box) plays a similar role as an E3 ligase in the ubiquitin protein degradation pathway [, ]. Different F-box proteins as a part of SCF complex recruit particular substrates for ubiquitination through specific protein-protein interaction domains. Many mammalian F-box domains contain leucine-rich or WD-40 repeats (IPR001680 from INTERPRO). However, several F-box proteins either have other previously described domains such as Sec7 domain found in FBS protein or do not contain defined protein-protein interaction domains or motifs.; GO: 0005515 protein binding; PDB: 2E32_A 2E31_A 3V7D_B 1NEX_B 3MKS_D 3L2O_B.

>KOG1230 consensus Protein containing repeated kelch motifs [General function prediction only]

Probab=98.54  E-value=1.9e-06  Score=82.59  Aligned_cols=199  Identities=14%  Similarity=0.203  Sum_probs=123.3

Q ss_pred             eEEEEcCCCCceEecCCC--CcCCcceeEEEEEEcCCCCCCCeEEEEEEec------------CcEEEEeCCCCCccCCC
Q 012227          226 NFYVCNPLTQSFKELPAR--SVKVWSRVAVGMTLNGNSTSSGYKILWVGCD------------GEYEIYDSLRNSWTRPG  291 (468)
Q Consensus       226 ~~~V~NP~T~~~~~LP~~--~~~~~~~~~~~~~~d~~~~~~~ykVv~v~~~------------~~v~vy~s~t~~W~~~~  291 (468)
                      .+|+||--+.+|+.+-.+  |.++..+.+++.     ++ +  .++++|+.            .+.++|+..+++|+.+.
T Consensus        99 dLy~Yn~k~~eWkk~~spn~P~pRsshq~va~-----~s-~--~l~~fGGEfaSPnq~qF~HYkD~W~fd~~trkweql~  170 (521)
T KOG1230|consen   99 DLYSYNTKKNEWKKVVSPNAPPPRSSHQAVAV-----PS-N--ILWLFGGEFASPNQEQFHHYKDLWLFDLKTRKWEQLE  170 (521)
T ss_pred             eeeEEeccccceeEeccCCCcCCCccceeEEe-----cc-C--eEEEeccccCCcchhhhhhhhheeeeeeccchheeec
Confidence            589999999999987554  444443333332     11 1  34444442            13899999999999885


Q ss_pred             CCCCCcccCcccccccceEEECCEEEEEEcC---------CCeEEEEECCCCeEEEeecCC--CCCCCCceEEEE-CCeE
Q 012227          292 SMPSNIKLPVSLNFRSQAVSVDGILYFMRSD---------PEGIVSYNMVTGVWKQFIIPT--PLHLNDHTLAEC-GGRI  359 (468)
Q Consensus       292 ~~p~~~~~~~~~~~~~~~v~~~G~lY~~~~~---------~~~i~~fD~~~~~w~~i~~P~--p~~~~~~~l~~~-~G~L  359 (468)
                      .-..    | +.+..+..|+....|...++-         -+-+.+||+++=+|+.+..+-  |..+.+.++.+. +|.|
T Consensus       171 ~~g~----P-S~RSGHRMvawK~~lilFGGFhd~nr~y~YyNDvy~FdLdtykW~Klepsga~PtpRSGcq~~vtpqg~i  245 (521)
T KOG1230|consen  171 FGGG----P-SPRSGHRMVAWKRQLILFGGFHDSNRDYIYYNDVYAFDLDTYKWSKLEPSGAGPTPRSGCQFSVTPQGGI  245 (521)
T ss_pred             cCCC----C-CCCccceeEEeeeeEEEEcceecCCCceEEeeeeEEEeccceeeeeccCCCCCCCCCCcceEEecCCCcE
Confidence            4211    1 113345666666666655541         135889999999999986654  556777888887 9999


Q ss_pred             EEEEEEee--------CCccEEEEEEEecCC-----CCeEEEEeeChhhhhcccCcceEEEEEecCCEEEEEeee-----
Q 012227          360 MLVGLLTK--------NAATCVCIWELQKMT-----LLWKEVDRMPNIWCLDFYGKHVRMTCLGNKGLLMLSLRS-----  421 (468)
Q Consensus       360 ~lv~~~~~--------~~~~~i~Vw~ld~~~-----~~W~~v~~mp~~~~~~~~~~~~~~~~~~~~~~I~~~~~~-----  421 (468)
                      ++.++++.        .+...-+.|.|++..     -.|+++...+..-...   ....+.+..++-.++|..-.     
T Consensus       246 ~vyGGYsK~~~kK~~dKG~~hsDmf~L~p~~~~~dKw~W~kvkp~g~kPspR---sgfsv~va~n~kal~FGGV~D~eee  322 (521)
T KOG1230|consen  246 VVYGGYSKQRVKKDVDKGTRHSDMFLLKPEDGREDKWVWTKVKPSGVKPSPR---SGFSVAVAKNHKALFFGGVCDLEEE  322 (521)
T ss_pred             EEEcchhHhhhhhhhhcCceeeeeeeecCCcCCCcceeEeeccCCCCCCCCC---CceeEEEecCCceEEecceeccccc
Confidence            99999865        123556899999865     4788876553321110   00112222233344441100     


Q ss_pred             ------CCCCeEEEEECCCCcEEEc
Q 012227          422 ------RQMNRLVTYNVMSREWLKV  440 (468)
Q Consensus       422 ------~~~~~l~~YD~~t~~w~~v  440 (468)
                            .-.+.|+.||+..++|.+.
T Consensus       323 eEsl~g~F~NDLy~fdlt~nrW~~~  347 (521)
T KOG1230|consen  323 EESLSGEFFNDLYFFDLTRNRWSEG  347 (521)
T ss_pred             chhhhhhhhhhhhheecccchhhHh
Confidence                  0135789999999999876

>smart00256 FBOX A Receptor for Ubiquitination Targets

Probab=98.53  E-value=6.8e-08  Score=63.44  Aligned_cols=39  Identities=33%  Similarity=0.826  Sum_probs=36.3

Q ss_pred             ChHHHHHHHHhcCChhhHHHHhhcccchhhhccCcchhh
Q 012227          122 FPEDLYEAVIARLPIATFFRFRSVCQKWNSLLKSHSFSQ  160 (468)
Q Consensus       122 LP~DLl~~IL~RLp~~~l~r~r~VCK~Wr~li~s~~F~~  160 (468)
                      ||+|++.+|+.+|+..++.+++.|||+|+.++.++.+..
T Consensus         1 lP~~ll~~I~~~l~~~d~~~~~~vc~~~~~~~~~~~~~~   39 (41)
T smart00256        1 LPDEILEEILSKLPPKDLLRLRKVSRRWRSLIDSHDFWF   39 (41)
T ss_pred             CCHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcChhhhh
Confidence            799999999999999999999999999999999887654

>KOG0379 consensus Kelch repeat-containing proteins [General function prediction only]

Probab=98.37  E-value=1.4e-05  Score=82.52  Aligned_cols=167  Identities=17%  Similarity=0.273  Sum_probs=114.6

Q ss_pred             eEEEEEEecC--------cEEEEeCCCCCccCCCCCCCCcccCcccccccceEEECCEEEEEEcCC------CeEEEEEC
Q 012227          266 YKILWVGCDG--------EYEIYDSLRNSWTRPGSMPSNIKLPVSLNFRSQAVSVDGILYFMRSDP------EGIVSYNM  331 (468)
Q Consensus       266 ykVv~v~~~~--------~v~vy~s~t~~W~~~~~~p~~~~~~~~~~~~~~~v~~~G~lY~~~~~~------~~i~~fD~  331 (468)
                      -+++++++..        ++.++|..+..|........   .| ..+..+..+.++..||.+++..      ..+..||+
T Consensus        71 ~~~~vfGG~~~~~~~~~~dl~~~d~~~~~w~~~~~~g~---~p-~~r~g~~~~~~~~~l~lfGG~~~~~~~~~~l~~~d~  146 (482)
T KOG0379|consen   71 NKLYVFGGYGSGDRLTDLDLYVLDLESQLWTKPAATGD---EP-SPRYGHSLSAVGDKLYLFGGTDKKYRNLNELHSLDL  146 (482)
T ss_pred             CEEEEECCCCCCCccccceeEEeecCCcccccccccCC---CC-CcccceeEEEECCeEEEEccccCCCCChhheEeccC
Confidence            3677776532        28888999999986543211   11 1234566778899999998743      36999999


Q ss_pred             CCCeEEEeecC--CCCCCCCceEEEECCeEEEEEEEeeCCccEEEEEEEecCCCCeEEEEeeChhhhhcccCcceEEEEE
Q 012227          332 VTGVWKQFIIP--TPLHLNDHTLAECGGRIMLVGLLTKNAATCVCIWELQKMTLLWKEVDRMPNIWCLDFYGKHVRMTCL  409 (468)
Q Consensus       332 ~~~~w~~i~~P--~p~~~~~~~l~~~~G~L~lv~~~~~~~~~~i~Vw~ld~~~~~W~~v~~mp~~~~~~~~~~~~~~~~~  409 (468)
                      .|.+|..+..-  +|..+.++.++..+.+|++.++........-++|.||..+.+|.++...+..-....     ...++
T Consensus       147 ~t~~W~~l~~~~~~P~~r~~Hs~~~~g~~l~vfGG~~~~~~~~ndl~i~d~~~~~W~~~~~~g~~P~pR~-----gH~~~  221 (482)
T KOG0379|consen  147 STRTWSLLSPTGDPPPPRAGHSATVVGTKLVVFGGIGGTGDSLNDLHIYDLETSTWSELDTQGEAPSPRY-----GHAMV  221 (482)
T ss_pred             CCCcEEEecCcCCCCCCcccceEEEECCEEEEECCccCcccceeeeeeeccccccceecccCCCCCCCCC-----CceEE
Confidence            99999987321  245566788889999999999876543356799999999899999976654332111     13344


Q ss_pred             ecCCEEEEEeeeC----CCCeEEEEECCCCcEEEcc
Q 012227          410 GNKGLLMLSLRSR----QMNRLVTYNVMSREWLKVP  441 (468)
Q Consensus       410 ~~~~~I~~~~~~~----~~~~l~~YD~~t~~w~~v~  441 (468)
                      ..++.+++..+..    ....++.+|+.+.+|.++.
T Consensus       222 ~~~~~~~v~gG~~~~~~~l~D~~~ldl~~~~W~~~~  257 (482)
T KOG0379|consen  222 VVGNKLLVFGGGDDGDVYLNDVHILDLSTWEWKLLP  257 (482)
T ss_pred             EECCeEEEEeccccCCceecceEeeecccceeeecc
Confidence            4456655533322    3457899999999999764

>KOG0281 consensus Beta-TrCP (transducin repeats containing)/Slimb proteins [Function unknown]

Probab=98.00  E-value=0.00024  Score=66.85  Aligned_cols=43  Identities=16%  Similarity=0.452  Sum_probs=39.3

Q ss_pred             hhccCh----HHHHHHHHhcCChhhHHHHhhcccchhhhccCcchhh
Q 012227          118 IWKEFP----EDLYEAVIARLPIATFFRFRSVCQKWNSLLKSHSFSQ  160 (468)
Q Consensus       118 ~w~~LP----~DLl~~IL~RLp~~~l~r~r~VCK~Wr~li~s~~F~~  160 (468)
                      .+..||    +++.++||+.|...+|..+..|||+|+++++++-.-+
T Consensus        74 Fi~~lP~~gl~hi~e~ilsyld~~sLc~celv~k~W~r~l~dg~~WK  120 (499)
T KOG0281|consen   74 FITALPEQGLDHIAENILSYLDALSLCACELVCKEWKRVLSDGMLWK  120 (499)
T ss_pred             HHHhcccccHHHHHHHHHHhcchhhhhHHHHHHHHHHHHhccchHHH
Confidence            467899    9999999999999999999999999999999986655

>KOG1230 consensus Protein containing repeated kelch motifs [General function prediction only]

Probab=97.87  E-value=0.0015  Score=63.27  Aligned_cols=159  Identities=16%  Similarity=0.291  Sum_probs=102.2

Q ss_pred             cEEEEeCCCCCccCCCCCCCCcccCcccccccceEEEC-CEEEEEEcC---C--------CeEEEEECCCCeEEEeecCC
Q 012227          276 EYEIYDSLRNSWTRPGSMPSNIKLPVSLNFRSQAVSVD-GILYFMRSD---P--------EGIVSYNMVTGVWKQFIIPT  343 (468)
Q Consensus       276 ~v~vy~s~t~~W~~~~~~p~~~~~~~~~~~~~~~v~~~-G~lY~~~~~---~--------~~i~~fD~~~~~w~~i~~P~  343 (468)
                      ++.+|+.++++|+.+.+....  .|   +..+++|++- |.+|..++.   +        .-+..||+.+.+|..+..+.
T Consensus        99 dLy~Yn~k~~eWkk~~spn~P--~p---Rsshq~va~~s~~l~~fGGEfaSPnq~qF~HYkD~W~fd~~trkweql~~~g  173 (521)
T KOG1230|consen   99 DLYSYNTKKNEWKKVVSPNAP--PP---RSSHQAVAVPSNILWLFGGEFASPNQEQFHHYKDLWLFDLKTRKWEQLEFGG  173 (521)
T ss_pred             eeeEEeccccceeEeccCCCc--CC---CccceeEEeccCeEEEeccccCCcchhhhhhhhheeeeeeccchheeeccCC
Confidence            478999999999987542111  11   2345566654 777777652   1        24778999999999997764


Q ss_pred             -CCCCCCceEEEECCeEEEEEEEeeCCc---cEEEEEEEecCCCCeEEEEeeChhhhhcccCcceEEEEEecCCEEEEEe
Q 012227          344 -PLHLNDHTLAECGGRIMLVGLLTKNAA---TCVCIWELQKMTLLWKEVDRMPNIWCLDFYGKHVRMTCLGNKGLLMLSL  419 (468)
Q Consensus       344 -p~~~~~~~l~~~~G~L~lv~~~~~~~~---~~i~Vw~ld~~~~~W~~v~~mp~~~~~~~~~~~~~~~~~~~~~~I~~~~  419 (468)
                       |..+.++.++.+..+|.+.++..+...   ..-+||.++-.+-+|.++.. +..+-..-.|  ..+.+.- .|.||++.
T Consensus       174 ~PS~RSGHRMvawK~~lilFGGFhd~nr~y~YyNDvy~FdLdtykW~Klep-sga~PtpRSG--cq~~vtp-qg~i~vyG  249 (521)
T KOG1230|consen  174 GPSPRSGHRMVAWKRQLILFGGFHDSNRDYIYYNDVYAFDLDTYKWSKLEP-SGAGPTPRSG--CQFSVTP-QGGIVVYG  249 (521)
T ss_pred             CCCCCccceeEEeeeeEEEEcceecCCCceEEeeeeEEEeccceeeeeccC-CCCCCCCCCc--ceEEecC-CCcEEEEc
Confidence             566788999999999999999876332   23588999988899999866 2211111111  1222222 44555533


Q ss_pred             eeC------------CCCeEEEEECCC-----CcEEEccCC
Q 012227          420 RSR------------QMNRLVTYNVMS-----REWLKVPGC  443 (468)
Q Consensus       420 ~~~------------~~~~l~~YD~~t-----~~w~~v~~~  443 (468)
                      +..            ....++..++++     =+|.+|...
T Consensus       250 GYsK~~~kK~~dKG~~hsDmf~L~p~~~~~dKw~W~kvkp~  290 (521)
T KOG1230|consen  250 GYSKQRVKKDVDKGTRHSDMFLLKPEDGREDKWVWTKVKPS  290 (521)
T ss_pred             chhHhhhhhhhhcCceeeeeeeecCCcCCCcceeEeeccCC
Confidence            211            123577888877     467777654

>COG3055 Uncharacterized protein conserved in bacteria [Function unknown]

Probab=97.63  E-value=0.0021  Score=61.35  Aligned_cols=157  Identities=17%  Similarity=0.284  Sum_probs=94.7

Q ss_pred             eEEEEcC--CCCceEecCCCCcCCcceeEEEEEEcCCCCCCCeEEEEEEecC-----------cEEEEeCCCCCccCCCC
Q 012227          226 NFYVCNP--LTQSFKELPARSVKVWSRVAVGMTLNGNSTSSGYKILWVGCDG-----------EYEIYDSLRNSWTRPGS  292 (468)
Q Consensus       226 ~~~V~NP--~T~~~~~LP~~~~~~~~~~~~~~~~d~~~~~~~ykVv~v~~~~-----------~v~vy~s~t~~W~~~~~  292 (468)
                      .+++.|.  ..+.|..+...+....... +....+       -|++++++.+           .+..||+.+++|..+..
T Consensus        59 afy~ldL~~~~k~W~~~a~FpG~~rnqa-~~a~~~-------~kLyvFgG~Gk~~~~~~~~~nd~Y~y~p~~nsW~kl~t  130 (381)
T COG3055          59 AFYVLDLKKPGKGWTKIADFPGGARNQA-VAAVIG-------GKLYVFGGYGKSVSSSPQVFNDAYRYDPSTNSWHKLDT  130 (381)
T ss_pred             cceehhhhcCCCCceEcccCCCcccccc-hheeeC-------CeEEEeeccccCCCCCceEeeeeEEecCCCChhheecc
Confidence            4566544  4578988877543322211 111222       4777766532           27889999999998865


Q ss_pred             CCCCcccCcccccccceEEECC-EEEEEEcC---------------------------------------CCeEEEEECC
Q 012227          293 MPSNIKLPVSLNFRSQAVSVDG-ILYFMRSD---------------------------------------PEGIVSYNMV  332 (468)
Q Consensus       293 ~p~~~~~~~~~~~~~~~v~~~G-~lY~~~~~---------------------------------------~~~i~~fD~~  332 (468)
                      ..+     .. .....++..++ .+|+.++.                                       ...+++||+.
T Consensus       131 ~sP-----~g-l~G~~~~~~~~~~i~f~GGvn~~if~~yf~dv~~a~~d~~~~~~i~~~yf~~~~~dy~~n~ev~sy~p~  204 (381)
T COG3055         131 RSP-----TG-LVGASTFSLNGTKIYFFGGVNQNIFNGYFEDVGAAGKDKEAVDKIIAHYFDKKAEDYFFNKEVLSYDPS  204 (381)
T ss_pred             ccc-----cc-cccceeEecCCceEEEEccccHHhhhhhHHhhhhhcccHHHHHHHHHHHhCCCHHHhcccccccccccc
Confidence            321     11 12334455566 88887631                                       0358999999


Q ss_pred             CCeEEEeecCCCCCC-CCceEEEECCeEEEEEEEeeCCccEEEEEEEec--CCCCeEEEEeeChhhhh
Q 012227          333 TGVWKQFIIPTPLHL-NDHTLAECGGRIMLVGLLTKNAATCVCIWELQK--MTLLWKEVDRMPNIWCL  397 (468)
Q Consensus       333 ~~~w~~i~~P~p~~~-~~~~l~~~~G~L~lv~~~~~~~~~~i~Vw~ld~--~~~~W~~v~~mp~~~~~  397 (468)
                      ++.|+..-. .|... .+..++.-+++|.+|.+.-++..++-++++.+-  ...+|.++..+|.....
T Consensus       205 ~n~W~~~G~-~pf~~~aGsa~~~~~n~~~lInGEiKpGLRt~~~k~~~~~~~~~~w~~l~~lp~~~~~  271 (381)
T COG3055         205 TNQWRNLGE-NPFYGNAGSAVVIKGNKLTLINGEIKPGLRTAEVKQADFGGDNLKWLKLSDLPAPIGS  271 (381)
T ss_pred             cchhhhcCc-CcccCccCcceeecCCeEEEEcceecCCccccceeEEEeccCceeeeeccCCCCCCCC
Confidence            999997631 22222 223334446669998887666666666666654  45799999888755443

>KOG2120 consensus SCF ubiquitin ligase, Skp2 component [Posttranslational modification, protein turnover, chaperones]

Probab=97.55  E-value=6.3e-05  Score=69.97  Aligned_cols=42  Identities=19%  Similarity=0.534  Sum_probs=38.8

Q ss_pred             hccChHHHHHHHHhcCChhhHHHHhhcccchhhhccCcchhh
Q 012227          119 WKEFPEDLYEAVIARLPIATFFRFRSVCQKWNSLLKSHSFSQ  160 (468)
Q Consensus       119 w~~LP~DLl~~IL~RLp~~~l~r~r~VCK~Wr~li~s~~F~~  160 (468)
                      |..|||||++.||+.|+.++|++...|||+|+++-++.....
T Consensus        98 ~~slpDEill~IFs~L~kk~LL~~~~VC~Rfyr~~~de~lW~  139 (419)
T KOG2120|consen   98 WDSLPDEILLGIFSCLCKKELLKVSGVCKRFYRLASDESLWQ  139 (419)
T ss_pred             cccCCHHHHHHHHHhccHHHHHHHHHHHHHHhhcccccccee
Confidence            999999999999999999999999999999999987765544

>KOG4152 consensus Host cell transcription factor HCFC1 [Cell cycle control, cell division, chromosome partitioning; Transcription]

Probab=97.54  E-value=0.0027  Score=63.07  Aligned_cols=199  Identities=17%  Similarity=0.241  Sum_probs=106.3

Q ss_pred             ceEEEEcCCCCceEecCCCCcCCcceeEEEEEEcCCCCCCCeEEEEEEecCc-----EEEEeCCCCC--ccCCCCCCCCc
Q 012227          225 RNFYVCNPLTQSFKELPARSVKVWSRVAVGMTLNGNSTSSGYKILWVGCDGE-----YEIYDSLRNS--WTRPGSMPSNI  297 (468)
Q Consensus       225 ~~~~V~NP~T~~~~~LP~~~~~~~~~~~~~~~~d~~~~~~~ykVv~v~~~~~-----v~vy~s~t~~--W~~~~~~p~~~  297 (468)
                      ..+.|||-.|++|-.-.-...-.....++||..|+      -||+++|+.-+     -+.|......  |+.+..-+...
T Consensus        57 DELHvYNTatnqWf~PavrGDiPpgcAA~GfvcdG------trilvFGGMvEYGkYsNdLYELQasRWeWkrlkp~~p~n  130 (830)
T KOG4152|consen   57 DELHVYNTATNQWFAPAVRGDIPPGCAAFGFVCDG------TRILVFGGMVEYGKYSNDLYELQASRWEWKRLKPKTPKN  130 (830)
T ss_pred             hhhhhhccccceeecchhcCCCCCchhhcceEecC------ceEEEEccEeeeccccchHHHhhhhhhhHhhcCCCCCCC
Confidence            47999999999996422111111134567888774      48998887533     2445554444  55554322222


Q ss_pred             ccCcccccccceEEECCEEEEEEc--C----C--------CeEEEEECC--CC--eEEEee--cCCCCCCCCceEEEE--
Q 012227          298 KLPVSLNFRSQAVSVDGILYFMRS--D----P--------EGIVSYNMV--TG--VWKQFI--IPTPLHLNDHTLAEC--  355 (468)
Q Consensus       298 ~~~~~~~~~~~~v~~~G~lY~~~~--~----~--------~~i~~fD~~--~~--~w~~i~--~P~p~~~~~~~l~~~--  355 (468)
                      ..+-.-+..+.-..++++.|.+++  +    .        +.+...++.  .+  .|....  -+.|..+..+..+.+  
T Consensus       131 G~pPCPRlGHSFsl~gnKcYlFGGLaNdseDpknNvPrYLnDlY~leL~~Gsgvv~W~ip~t~Gv~P~pRESHTAViY~e  210 (830)
T KOG4152|consen  131 GPPPCPRLGHSFSLVGNKCYLFGGLANDSEDPKNNVPRYLNDLYILELRPGSGVVAWDIPITYGVLPPPRESHTAVIYTE  210 (830)
T ss_pred             CCCCCCccCceeEEeccEeEEeccccccccCcccccchhhcceEEEEeccCCceEEEecccccCCCCCCcccceeEEEEe
Confidence            222222334555667899999875  1    0        123333333  22  354321  012223333444433  


Q ss_pred             -C---CeEEEEEEEeeCCccEEEEEEEecCCCCeEEE-----EeeChhhhhcccCcceEEEEEecCCEEEEEee------
Q 012227          356 -G---GRIMLVGLLTKNAATCVCIWELQKMTLLWKEV-----DRMPNIWCLDFYGKHVRMTCLGNKGLLMLSLR------  420 (468)
Q Consensus       356 -~---G~L~lv~~~~~~~~~~i~Vw~ld~~~~~W~~v-----~~mp~~~~~~~~~~~~~~~~~~~~~~I~~~~~------  420 (468)
                       |   -++++.++...  ..-=++|.||-++..|.+.     ..||..+..          ....||+.|+..+      
T Consensus       211 KDs~~skmvvyGGM~G--~RLgDLW~Ldl~Tl~W~kp~~~G~~PlPRSLHs----------a~~IGnKMyvfGGWVPl~~  278 (830)
T KOG4152|consen  211 KDSKKSKMVVYGGMSG--CRLGDLWTLDLDTLTWNKPSLSGVAPLPRSLHS----------ATTIGNKMYVFGGWVPLVM  278 (830)
T ss_pred             ccCCcceEEEEccccc--ccccceeEEecceeecccccccCCCCCCccccc----------ceeecceeEEecceeeeec
Confidence             2   35666665433  2334899999999999885     344444332          1112444444210      


Q ss_pred             -e-C---------CCCeEEEEECCCCcEEEcc
Q 012227          421 -S-R---------QMNRLVTYNVMSREWLKVP  441 (468)
Q Consensus       421 -~-~---------~~~~l~~YD~~t~~w~~v~  441 (468)
                       . .         =...+-+.|+++..|+.+-
T Consensus       279 ~~~~~~~hekEWkCTssl~clNldt~~W~tl~  310 (830)
T KOG4152|consen  279 DDVKVATHEKEWKCTSSLACLNLDTMAWETLL  310 (830)
T ss_pred             cccccccccceeeeccceeeeeecchheeeee
Confidence             0 0         0235789999999999884

>PF01344 Kelch_1: Kelch motif; InterPro: IPR006652 Kelch is a 50-residue motif, named after the Drosophila mutant in which it was first identified []

Probab=97.42  E-value=0.00089  Score=45.02  Aligned_cols=45  Identities=22%  Similarity=0.367  Sum_probs=38.6

Q ss_pred             CCceEEEECCeEEEEEEEeeCCccEEEEEEEecCCCCeEEEEeeC
Q 012227          348 NDHTLAECGGRIMLVGLLTKNAATCVCIWELQKMTLLWKEVDRMP  392 (468)
Q Consensus       348 ~~~~l~~~~G~L~lv~~~~~~~~~~i~Vw~ld~~~~~W~~v~~mp  392 (468)
                      ....+++++++||++++........-.+|++|..+++|+++..||
T Consensus         3 ~~~~~~~~~~~iyv~GG~~~~~~~~~~v~~yd~~~~~W~~~~~mp   47 (47)
T PF01344_consen    3 SGHAAVVVGNKIYVIGGYDGNNQPTNSVEVYDPETNTWEELPPMP   47 (47)
T ss_dssp             BSEEEEEETTEEEEEEEBESTSSBEEEEEEEETTTTEEEEEEEES
T ss_pred             ccCEEEEECCEEEEEeeecccCceeeeEEEEeCCCCEEEEcCCCC
Confidence            345678899999999998775566778999999999999999986

This sequence motif represents one beta-sheet blade, and several of these repeats can associate to form a beta-propeller. For instance, the motif appears 6 times in Drosophila egg-chamber regulatory protein, creating a 6-bladed beta-propeller. The motif is also found in mouse protein MIPP [] and in a number of poxviruses. In addition, kelch repeats have been recognised in alpha- and beta-scruin [, ], and in galactose oxidase from the fungus Dactylium dendroides [, ]. The structure of galactose oxidase reveals that the repeated sequence corresponds to a 4-stranded anti-parallel beta-sheet motif that forms the repeat unit in a super-barrel structural fold []. The known functions of kelch-containing proteins are diverse: scruin is an actin cross-linking protein; galactose oxidase catalyses the oxidation of the hydroxyl group at the C6 position in D-galactose; neuraminidase hydrolyses sialic acid residues from glycoproteins; and kelch may have a cytoskeletal function, as it is localised to the actin-rich ring canals that connect the 15 nurse cells to the developing oocyte in Drosophila []. Nevertheless, based on the location of the kelch pattern in the catalytic unit in galactose oxidase, functionally important residues have been predicted in glyoxal oxidase []. This entry represents a type of kelch sequence motif that comprises one beta-sheet blade.; GO: 0005515 protein binding; PDB: 2XN4_A 2WOZ_A 3II7_A 4ASC_A 1U6D_X 1ZGK_A 2FLU_X 2VPJ_A 2DYH_A 1X2R_A ....

>PF13964 Kelch_6: Kelch motif

Probab=97.03  E-value=0.00083  Score=45.93  Aligned_cols=45  Identities=20%  Similarity=0.360  Sum_probs=36.8

Q ss_pred             CceEEEECCeEEEEEEEeeCCccEEEEEEEecCCCCeEEEEeeCh
Q 012227          349 DHTLAECGGRIMLVGLLTKNAATCVCIWELQKMTLLWKEVDRMPN  393 (468)
Q Consensus       349 ~~~l~~~~G~L~lv~~~~~~~~~~i~Vw~ld~~~~~W~~v~~mp~  393 (468)
                      ...++.++|+||++++........-+||++|..+++|+++..||.
T Consensus         4 ~~s~v~~~~~iyv~GG~~~~~~~~~~v~~yd~~t~~W~~~~~mp~   48 (50)
T PF13964_consen    4 GHSAVVVGGKIYVFGGYDNSGKYSNDVERYDPETNTWEQLPPMPT   48 (50)
T ss_pred             cCEEEEECCEEEEECCCCCCCCccccEEEEcCCCCcEEECCCCCC
Confidence            456788999999999876533445689999999999999998874

>PF13964 Kelch_6: Kelch motif

Probab=97.01  E-value=0.0019  Score=44.15  Aligned_cols=40  Identities=18%  Similarity=0.292  Sum_probs=30.3

Q ss_pred             EEecCCEEEEEeeeCC----CCeEEEEECCCCcEEEccCCccCC
Q 012227          408 CLGNKGLLMLSLRSRQ----MNRLVTYNVMSREWLKVPGCVVPR  447 (468)
Q Consensus       408 ~~~~~~~I~~~~~~~~----~~~l~~YD~~t~~w~~v~~~~~~~  447 (468)
                      ++..++.||+..+...    ...+++||+++++|+.++.+|.+|
T Consensus         7 ~v~~~~~iyv~GG~~~~~~~~~~v~~yd~~t~~W~~~~~mp~pR   50 (50)
T PF13964_consen    7 AVVVGGKIYVFGGYDNSGKYSNDVERYDPETNTWEQLPPMPTPR   50 (50)
T ss_pred             EEEECCEEEEECCCCCCCCccccEEEEcCCCCcEEECCCCCCCC
Confidence            4445788888543322    468999999999999999888764

>COG3055 Uncharacterized protein conserved in bacteria [Function unknown]

Probab=96.88  E-value=0.024  Score=54.36  Aligned_cols=181  Identities=16%  Similarity=0.234  Sum_probs=109.8

Q ss_pred             EEEEEEecCc--EEEEeCC--CCCccCCCCCCCCcccCcccccccceEEECCEEEEEEcCC----------CeEEEEECC
Q 012227          267 KILWVGCDGE--YEIYDSL--RNSWTRPGSMPSNIKLPVSLNFRSQAVSVDGILYFMRSDP----------EGIVSYNMV  332 (468)
Q Consensus       267 kVv~v~~~~~--v~vy~s~--t~~W~~~~~~p~~~~~~~~~~~~~~~v~~~G~lY~~~~~~----------~~i~~fD~~  332 (468)
                      ++++.-+...  ..+.|.+  ...|+.++..|-..      +-....++++|+||+.++..          +.+..||+.
T Consensus        48 ~~YVGLGs~G~afy~ldL~~~~k~W~~~a~FpG~~------rnqa~~a~~~~kLyvFgG~Gk~~~~~~~~~nd~Y~y~p~  121 (381)
T COG3055          48 TVYVGLGSAGTAFYVLDLKKPGKGWTKIADFPGGA------RNQAVAAVIGGKLYVFGGYGKSVSSSPQVFNDAYRYDPS  121 (381)
T ss_pred             eEEEEeccCCccceehhhhcCCCCceEcccCCCcc------cccchheeeCCeEEEeeccccCCCCCceEeeeeEEecCC
Confidence            4554333333  3444444  46799998765431      22345667999999987521          347789999


Q ss_pred             CCeEEEeecCCCCCCCCceEEEECC-eEEEEEEEeeC--------------C-------------------ccEEEEEEE
Q 012227          333 TGVWKQFIIPTPLHLNDHTLAECGG-RIMLVGLLTKN--------------A-------------------ATCVCIWEL  378 (468)
Q Consensus       333 ~~~w~~i~~P~p~~~~~~~l~~~~G-~L~lv~~~~~~--------------~-------------------~~~i~Vw~l  378 (468)
                      +++|..+..-.|........+..++ ++++.++....              +                   ...-+||.+
T Consensus       122 ~nsW~kl~t~sP~gl~G~~~~~~~~~~i~f~GGvn~~if~~yf~dv~~a~~d~~~~~~i~~~yf~~~~~dy~~n~ev~sy  201 (381)
T COG3055         122 TNSWHKLDTRSPTGLVGASTFSLNGTKIYFFGGVNQNIFNGYFEDVGAAGKDKEAVDKIIAHYFDKKAEDYFFNKEVLSY  201 (381)
T ss_pred             CChhheeccccccccccceeEecCCceEEEEccccHHhhhhhHHhhhhhcccHHHHHHHHHHHhCCCHHHhccccccccc
Confidence            9999998665566555556666666 99998876431              0                   112467777


Q ss_pred             ecCCCCeEEEEeeChhhhhcccCcceEEEEEecCCEEEEEeee-C---CCCeEEEEECC--CCcEEEccCCccCCCCccc
Q 012227          379 QKMTLLWKEVDRMPNIWCLDFYGKHVRMTCLGNKGLLMLSLRS-R---QMNRLVTYNVM--SREWLKVPGCVVPRGRKRQ  452 (468)
Q Consensus       379 d~~~~~W~~v~~mp~~~~~~~~~~~~~~~~~~~~~~I~~~~~~-~---~~~~l~~YD~~--t~~w~~v~~~~~~~~~~~~  452 (468)
                      ++.++.|..+...|-.-.   .+    ..++..+|.+.+..+. +   ....+..+|..  .-+|.+++.+|.+.+.-.+
T Consensus       202 ~p~~n~W~~~G~~pf~~~---aG----sa~~~~~n~~~lInGEiKpGLRt~~~k~~~~~~~~~~w~~l~~lp~~~~~~~e  274 (381)
T COG3055         202 DPSTNQWRNLGENPFYGN---AG----SAVVIKGNKLTLINGEIKPGLRTAEVKQADFGGDNLKWLKLSDLPAPIGSNKE  274 (381)
T ss_pred             ccccchhhhcCcCcccCc---cC----cceeecCCeEEEEcceecCCccccceeEEEeccCceeeeeccCCCCCCCCCcc
Confidence            887888887766653211   11    3344456755442211 1   12345566654  5589999888877765545


Q ss_pred             eeeeeeee
Q 012227          453 WIACGTAF  460 (468)
Q Consensus       453 ~~~~g~~f  460 (468)
                      -++.+|..
T Consensus       275 GvAGaf~G  282 (381)
T COG3055         275 GVAGAFSG  282 (381)
T ss_pred             ccceeccc
Confidence            66666643

>PF07646 Kelch_2: Kelch motif; InterPro: IPR011498 Kelch is a 50-residue motif, named after the Drosophila mutant in which it was first identified []

Probab=96.79  E-value=0.0021  Score=43.67  Aligned_cols=44  Identities=20%  Similarity=0.423  Sum_probs=35.5

Q ss_pred             CceEEEECCeEEEEEEE--eeCCccEEEEEEEecCCCCeEEEEeeC
Q 012227          349 DHTLAECGGRIMLVGLL--TKNAATCVCIWELQKMTLLWKEVDRMP  392 (468)
Q Consensus       349 ~~~l~~~~G~L~lv~~~--~~~~~~~i~Vw~ld~~~~~W~~v~~mp  392 (468)
                      .+..++.+++||++++.  ........++|.+|..+.+|+++..||
T Consensus         4 ~hs~~~~~~kiyv~GG~~~~~~~~~~~~v~~~d~~t~~W~~~~~~g   49 (49)
T PF07646_consen    4 GHSAVVLDGKIYVFGGYGTDNGGSSSNDVWVFDTETNQWTELSPMG   49 (49)
T ss_pred             ceEEEEECCEEEEECCcccCCCCcccceeEEEECCCCEEeecCCCC
Confidence            45677899999999998  223456678999999999999987764

This sequence motif represents one beta-sheet blade, and several of these repeats can associate to form a beta-propeller. For instance, the motif appears 6 times in Drosophila egg-chamber regulatory protein, creating a 6-bladed beta-propeller. The motif is also found in mouse protein MIPP [] and in a number of poxviruses. In addition, kelch repeats have been recognised in alpha- and beta-scruin [, ], and in galactose oxidase from the fungus Dactylium dendroides [, ]. The structure of galactose oxidase reveals that the repeated sequence corresponds to a 4-stranded anti-parallel beta-sheet motif that forms the repeat unit in a super-barrel structural fold []. The known functions of kelch-containing proteins are diverse: scruin is an actin cross-linking protein; galactose oxidase catalyses the oxidation of the hydroxyl group at the C6 position in D-galactose; neuraminidase hydrolyses sialic acid residues from glycoproteins; and kelch may have a cytoskeletal function, as it is localised to the actin-rich ring canals that connect the 15 nurse cells to the developing oocyte in Drosophila []. Nevertheless, based on the location of the kelch pattern in the catalytic unit in galactose oxidase, functionally important residues have been predicted in glyoxal oxidase []. This entry represents a type of kelch sequence motif that comprises one beta-sheet blade.; GO: 0005515 protein binding

>KOG0274 consensus Cdc4 and related F-box and WD-40 proteins [General function prediction only]

Probab=96.49  E-value=0.65  Score=48.59  Aligned_cols=45  Identities=22%  Similarity=0.461  Sum_probs=39.7

Q ss_pred             hhhhccChHHHHHHHHhcCChhhHHHHhhcccchhhhccCcchhh
Q 012227          116 QEIWKEFPEDLYEAVIARLPIATFFRFRSVCQKWNSLLKSHSFSQ  160 (468)
Q Consensus       116 ~~~w~~LP~DLl~~IL~RLp~~~l~r~r~VCK~Wr~li~s~~F~~  160 (468)
                      ......||.++...||..|+.++++.+++||+.|+.++.+.....
T Consensus       105 ~dfi~~lp~el~~~il~~Ld~~~l~~~~~v~~~w~~~~~~~~~~~  149 (537)
T KOG0274|consen  105 RDFLSLLPSELSLHILSFLDGRDLLAVRQVCRNWNKLLDDDKVWW  149 (537)
T ss_pred             cchhhcccchhcccccccCCHHHhhhhhhhcchhhhhhhccchhh
Confidence            345688999999999999999999999999999999988765554

>PF07893 DUF1668: Protein of unknown function (DUF1668); InterPro: IPR012871 The hypothetical proteins found in this family are expressed by Oryza sativa (Rice) and are of unknown function

Probab=96.44  E-value=0.13  Score=50.82  Aligned_cols=128  Identities=11%  Similarity=0.127  Sum_probs=77.5

Q ss_pred             ECCEEEEEEcCCCeEEEEECCCCeEEEeecCCCC-CCCCceEEEECCeEEEEEEEeeCCcc------EEEEEEEec----
Q 012227          312 VDGILYFMRSDPEGIVSYNMVTGVWKQFIIPTPL-HLNDHTLAECGGRIMLVGLLTKNAAT------CVCIWELQK----  380 (468)
Q Consensus       312 ~~G~lY~~~~~~~~i~~fD~~~~~w~~i~~P~p~-~~~~~~l~~~~G~L~lv~~~~~~~~~------~i~Vw~ld~----  380 (468)
                      .+.+|..+... ..++.||.++......  |... .......+..+|+||++.........      .+++..++.    
T Consensus        75 ~gskIv~~d~~-~~t~vyDt~t~av~~~--P~l~~pk~~pisv~VG~~LY~m~~~~~~~~~~~~~~~~FE~l~~~~~~~~  151 (342)
T PF07893_consen   75 HGSKIVAVDQS-GRTLVYDTDTRAVATG--PRLHSPKRCPISVSVGDKLYAMDRSPFPEPAGRPDFPCFEALVYRPPPDD  151 (342)
T ss_pred             cCCeEEEEcCC-CCeEEEECCCCeEecc--CCCCCCCcceEEEEeCCeEEEeeccCccccccCccceeEEEecccccccc
Confidence            37777777654 4588999999987743  4322 22234455679999999876432111      677775552    


Q ss_pred             --C--CCCeEEEEeeChhhhhcccCc----ceEEEEEecCCEEEEEeeeCCCCeEEEEECCCCcEEEccCCccCC
Q 012227          381 --M--TLLWKEVDRMPNIWCLDFYGK----HVRMTCLGNKGLLMLSLRSRQMNRLVTYNVMSREWLKVPGCVVPR  447 (468)
Q Consensus       381 --~--~~~W~~v~~mp~~~~~~~~~~----~~~~~~~~~~~~I~~~~~~~~~~~l~~YD~~t~~w~~v~~~~~~~  447 (468)
                        .  ...|..+..-|   +......    .....++ +|..|+++.... ....++||.++.+|+++....+|.
T Consensus       152 ~~~~~~w~W~~LP~PP---f~~~~~~~~~~i~sYavv-~g~~I~vS~~~~-~~GTysfDt~~~~W~~~GdW~LPF  221 (342)
T PF07893_consen  152 PSPEESWSWRSLPPPP---FVRDRRYSDYRITSYAVV-DGRTIFVSVNGR-RWGTYSFDTESHEWRKHGDWMLPF  221 (342)
T ss_pred             ccCCCcceEEcCCCCC---ccccCCcccceEEEEEEe-cCCeEEEEecCC-ceEEEEEEcCCcceeeccceecCc
Confidence              1  23566543322   2111110    1234444 578898865431 136899999999999998766665

>PF01344 Kelch_1: Kelch motif; InterPro: IPR006652 Kelch is a 50-residue motif, named after the Drosophila mutant in which it was first identified []

Probab=96.15  E-value=0.01  Score=39.75  Aligned_cols=34  Identities=21%  Similarity=0.428  Sum_probs=28.5

Q ss_pred             ccceEEECCEEEEEEcCC------CeEEEEECCCCeEEEe
Q 012227          306 RSQAVSVDGILYFMRSDP------EGIVSYNMVTGVWKQF  339 (468)
Q Consensus       306 ~~~~v~~~G~lY~~~~~~------~~i~~fD~~~~~w~~i  339 (468)
                      ...++.+++.||++++..      ..+..||+.+++|..+
T Consensus         4 ~~~~~~~~~~iyv~GG~~~~~~~~~~v~~yd~~~~~W~~~   43 (47)
T PF01344_consen    4 GHAAVVVGNKIYVIGGYDGNNQPTNSVEVYDPETNTWEEL   43 (47)
T ss_dssp             SEEEEEETTEEEEEEEBESTSSBEEEEEEEETTTTEEEEE
T ss_pred             cCEEEEECCEEEEEeeecccCceeeeEEEEeCCCCEEEEc
Confidence            456788999999998721      3699999999999987

This sequence motif represents one beta-sheet blade, and several of these repeats can associate to form a beta-propeller. For instance, the motif appears 6 times in Drosophila egg-chamber regulatory protein, creating a 6-bladed beta-propeller. The motif is also found in mouse protein MIPP [] and in a number of poxviruses. In addition, kelch repeats have been recognised in alpha- and beta-scruin [, ], and in galactose oxidase from the fungus Dactylium dendroides [, ]. The structure of galactose oxidase reveals that the repeated sequence corresponds to a 4-stranded anti-parallel beta-sheet motif that forms the repeat unit in a super-barrel structural fold []. The known functions of kelch-containing proteins are diverse: scruin is an actin cross-linking protein; galactose oxidase catalyses the oxidation of the hydroxyl group at the C6 position in D-galactose; neuraminidase hydrolyses sialic acid residues from glycoproteins; and kelch may have a cytoskeletal function, as it is localised to the actin-rich ring canals that connect the 15 nurse cells to the developing oocyte in Drosophila []. Nevertheless, based on the location of the kelch pattern in the catalytic unit in galactose oxidase, functionally important residues have been predicted in glyoxal oxidase []. This entry represents a type of kelch sequence motif that comprises one beta-sheet blade.; GO: 0005515 protein binding; PDB: 2XN4_A 2WOZ_A 3II7_A 4ASC_A 1U6D_X 1ZGK_A 2FLU_X 2VPJ_A 2DYH_A 1X2R_A ....

>PF13418 Kelch_4: Galactose oxidase, central domain; PDB: 2UVK_B

Probab=96.09  E-value=0.016  Score=39.15  Aligned_cols=44  Identities=18%  Similarity=0.351  Sum_probs=27.4

Q ss_pred             CceEEEE-CCeEEEEEEEeeCCccEEEEEEEecCCCCeEEEEeeC
Q 012227          349 DHTLAEC-GGRIMLVGLLTKNAATCVCIWELQKMTLLWKEVDRMP  392 (468)
Q Consensus       349 ~~~l~~~-~G~L~lv~~~~~~~~~~i~Vw~ld~~~~~W~~v~~mp  392 (468)
                      .+.++.. +++|+++++........-++|.+|..+++|+++..+|
T Consensus         4 ~h~~~~~~~~~i~v~GG~~~~~~~~~d~~~~d~~~~~W~~~~~~P   48 (49)
T PF13418_consen    4 GHSAVSIGDNSIYVFGGRDSSGSPLNDLWIFDIETNTWTRLPSMP   48 (49)
T ss_dssp             S-EEEEE-TTEEEEE--EEE-TEE---EEEEETTTTEEEE--SS-
T ss_pred             eEEEEEEeCCeEEEECCCCCCCcccCCEEEEECCCCEEEECCCCC
Confidence            3445555 6999999998765455668999999999999997776

>smart00612 Kelch Kelch domain

Probab=95.80  E-value=0.019  Score=38.05  Aligned_cols=29  Identities=41%  Similarity=0.589  Sum_probs=22.1

Q ss_pred             EEEEEecC------cEEEEeCCCCCccCCCCCCCC
Q 012227          268 ILWVGCDG------EYEIYDSLRNSWTRPGSMPSN  296 (468)
Q Consensus       268 Vv~v~~~~------~v~vy~s~t~~W~~~~~~p~~  296 (468)
                      |+++|+..      .+++||+.+++|+.++.|+..
T Consensus         2 iyv~GG~~~~~~~~~v~~yd~~~~~W~~~~~~~~~   36 (47)
T smart00612        2 IYVVGGFDGGQRLKSVEVYDPETNKWTPLPSMPTP   36 (47)
T ss_pred             EEEEeCCCCCceeeeEEEECCCCCeEccCCCCCCc
Confidence            55555532      389999999999999887754

>KOG2997 consensus F-box protein FBX9 [General function prediction only]

Probab=95.79  E-value=0.005  Score=57.86  Aligned_cols=43  Identities=7%  Similarity=0.206  Sum_probs=38.6

Q ss_pred             hccChHHHHHHHHhcCCh-----hhHHHHhhcccchhhhccCcchhhh
Q 012227          119 WKEFPEDLYEAVIARLPI-----ATFFRFRSVCQKWNSLLKSHSFSQH  161 (468)
Q Consensus       119 w~~LP~DLl~~IL~RLp~-----~~l~r~r~VCK~Wr~li~s~~F~~~  161 (468)
                      +..||||||..||.++=.     .+|.++++|||.|+-...+|+|.+.
T Consensus       107 ~~~LPdEvLm~I~~~vv~~~~d~rsL~~~s~vCr~F~~~~R~~~lwR~  154 (366)
T KOG2997|consen  107 ISVLPDEVLMRIFRWVVSSLLDLRSLEQLSLVCRGFYKCARDPELWRL  154 (366)
T ss_pred             hhhCCHHHHHHHHHHHHhhhcchhhHHHhHhhHHHHHHHHcChHHHHH
Confidence            568999999999998754     7899999999999999999998873

>PF08450 SGL: SMP-30/Gluconolaconase/LRE-like region; InterPro: IPR013658 This family describes a region that is found in proteins expressed by a variety of eukaryotic and prokaryotic species

Probab=95.60  E-value=0.77  Score=42.84  Aligned_cols=199  Identities=16%  Similarity=0.157  Sum_probs=105.9

Q ss_pred             eecCceEEEEEcCCceEEEEcCCCCceEecCCCCcCCcceeEEEEEEcCCCCCCCeEEEEEEecCcEEEEeCCCCCccCC
Q 012227          211 ASAGGLVCFLDIGHRNFYVCNPLTQSFKELPARSVKVWSRVAVGMTLNGNSTSSGYKILWVGCDGEYEIYDSLRNSWTRP  290 (468)
Q Consensus       211 ~s~~GLl~~~~~~~~~~~V~NP~T~~~~~LP~~~~~~~~~~~~~~~~d~~~~~~~ykVv~v~~~~~v~vy~s~t~~W~~~  290 (468)
                      ...+|-|++.+....+++.++|.+++...+..+.       ..++.++  .  .+.++++ +......++|..+++++.+
T Consensus         8 d~~~g~l~~~D~~~~~i~~~~~~~~~~~~~~~~~-------~~G~~~~--~--~~g~l~v-~~~~~~~~~d~~~g~~~~~   75 (246)
T PF08450_consen    8 DPRDGRLYWVDIPGGRIYRVDPDTGEVEVIDLPG-------PNGMAFD--R--PDGRLYV-ADSGGIAVVDPDTGKVTVL   75 (246)
T ss_dssp             ETTTTEEEEEETTTTEEEEEETTTTEEEEEESSS-------EEEEEEE--C--TTSEEEE-EETTCEEEEETTTTEEEEE
T ss_pred             ECCCCEEEEEEcCCCEEEEEECCCCeEEEEecCC-------CceEEEE--c--cCCEEEE-EEcCceEEEecCCCcEEEE
Confidence            3347778888877789999999999887654422       2444444  1  1245554 3445677789999988876


Q ss_pred             CCCCCCcccCcccccccceEEECCEEEEEEcCC--------CeEEEEECCCCeEEEeecCCCCCCCCceEEEE-CCe-EE
Q 012227          291 GSMPSNIKLPVSLNFRSQAVSVDGILYFMRSDP--------EGIVSYNMVTGVWKQFIIPTPLHLNDHTLAEC-GGR-IM  360 (468)
Q Consensus       291 ~~~p~~~~~~~~~~~~~~~v~~~G~lY~~~~~~--------~~i~~fD~~~~~w~~i~~P~p~~~~~~~l~~~-~G~-L~  360 (468)
                      ...+... .+. .....-.+--+|.+|+-....        ..+..+|+. ++...+...+.   ....++.. +|+ ||
T Consensus        76 ~~~~~~~-~~~-~~~ND~~vd~~G~ly~t~~~~~~~~~~~~g~v~~~~~~-~~~~~~~~~~~---~pNGi~~s~dg~~ly  149 (246)
T PF08450_consen   76 ADLPDGG-VPF-NRPNDVAVDPDGNLYVTDSGGGGASGIDPGSVYRIDPD-GKVTVVADGLG---FPNGIAFSPDGKTLY  149 (246)
T ss_dssp             EEEETTC-SCT-EEEEEEEE-TTS-EEEEEECCBCTTCGGSEEEEEEETT-SEEEEEEEEES---SEEEEEEETTSSEEE
T ss_pred             eeccCCC-ccc-CCCceEEEcCCCCEEEEecCCCccccccccceEEECCC-CeEEEEecCcc---cccceEECCcchhee
Confidence            5432110 000 011122233378988865421        358899998 65554421111   11234433 565 55


Q ss_pred             EEEEEeeCCccEEEEEEEecC--CCCeEEEEe---eChhhhhcccCcceEEEEEecCCEEEEEeeeCCCCeEEEEECCCC
Q 012227          361 LVGLLTKNAATCVCIWELQKM--TLLWKEVDR---MPNIWCLDFYGKHVRMTCLGNKGLLMLSLRSRQMNRLVTYNVMSR  435 (468)
Q Consensus       361 lv~~~~~~~~~~i~Vw~ld~~--~~~W~~v~~---mp~~~~~~~~~~~~~~~~~~~~~~I~~~~~~~~~~~l~~YD~~t~  435 (468)
                      ++..    ...  .||+++..  ...+.....   ++...     + ...-.++..+|.||+...  ..+.|.+||++.+
T Consensus       150 v~ds----~~~--~i~~~~~~~~~~~~~~~~~~~~~~~~~-----g-~pDG~~vD~~G~l~va~~--~~~~I~~~~p~G~  215 (246)
T PF08450_consen  150 VADS----FNG--RIWRFDLDADGGELSNRRVFIDFPGGP-----G-YPDGLAVDSDGNLWVADW--GGGRIVVFDPDGK  215 (246)
T ss_dssp             EEET----TTT--EEEEEEEETTTCCEEEEEEEEE-SSSS-----C-EEEEEEEBTTS-EEEEEE--TTTEEEEEETTSC
T ss_pred             eccc----ccc--eeEEEeccccccceeeeeeEEEcCCCC-----c-CCCcceEcCCCCEEEEEc--CCCEEEEECCCcc
Confidence            4332    123  46665543  344543322   22111     0 011235556788887543  3579999999966


Q ss_pred             cEEEcc
Q 012227          436 EWLKVP  441 (468)
Q Consensus       436 ~w~~v~  441 (468)
                      ....+.
T Consensus       216 ~~~~i~  221 (246)
T PF08450_consen  216 LLREIE  221 (246)
T ss_dssp             EEEEEE
T ss_pred             EEEEEc
Confidence            666664

These proteins include various enzymes, such as senescence marker protein 30 (SMP-30, Q15493 from SWISSPROT), gluconolactonase (Q01578 from SWISSPROT) and luciferin-regenerating enzyme (LRE, Q86DU5 from SWISSPROT). SMP-30 is known to hydrolyse diisopropyl phosphorofluoridate in the liver, and has been noted as having sequence similarity, in the region described in this family, with PON1 (P52430 from SWISSPROT) and LRE. ; PDB: 2GHS_A 2DG0_L 2DG1_D 2DSO_D 3E5Z_A 2IAT_A 2IAV_A 2GVV_A 3HLI_A 2GVU_A ....

>TIGR01640 F_box_assoc_1 F-box protein interaction domain

Probab=95.32  E-value=2  Score=39.61  Aligned_cols=116  Identities=11%  Similarity=0.078  Sum_probs=64.4

Q ss_pred             CcEEEEeCCCCCccCCCCCCCCcccCcccccccceEEEC---C--EEEEEEc-----CCCeEEEEECCCCeEEEeecCCC
Q 012227          275 GEYEIYDSLRNSWTRPGSMPSNIKLPVSLNFRSQAVSVD---G--ILYFMRS-----DPEGIVSYNMVTGVWKQFIIPTP  344 (468)
Q Consensus       275 ~~v~vy~s~t~~W~~~~~~p~~~~~~~~~~~~~~~v~~~---G--~lY~~~~-----~~~~i~~fD~~~~~w~~i~~P~p  344 (468)
                      ..+.|+++.|+.|+.++..+.....+..   ...+.-.+   +  ++-.+..     ....+.+|+..++.|+.+..+.+
T Consensus        14 ~~~~V~NP~T~~~~~LP~~~~~~~~~~~---~~~~~G~d~~~~~YKVv~~~~~~~~~~~~~~~Vys~~~~~Wr~~~~~~~   90 (230)
T TIGR01640        14 KRLVVWNPSTGQSRWLPTPKSRRSNKES---DTYFLGYDPIEKQYKVLCFSDRSGNRNQSEHQVYTLGSNSWRTIECSPP   90 (230)
T ss_pred             CcEEEECCCCCCEEecCCCCCccccccc---ceEEEeecccCCcEEEEEEEeecCCCCCccEEEEEeCCCCccccccCCC
Confidence            4588999999999988653321000000   00111111   1  2222221     12467899999999999853322


Q ss_pred             CCCCCceEEEECCeEEEEEEEeeCCccEEEEEEEecCCCCeEEEEeeChh
Q 012227          345 LHLNDHTLAECGGRIMLVGLLTKNAATCVCIWELQKMTLLWKEVDRMPNI  394 (468)
Q Consensus       345 ~~~~~~~l~~~~G~L~lv~~~~~~~~~~i~Vw~ld~~~~~W~~v~~mp~~  394 (468)
                      .......-+..+|.||.+...... .....|-.+|-.+++|.+.-.+|..
T Consensus        91 ~~~~~~~~v~~~G~lyw~~~~~~~-~~~~~IvsFDl~~E~f~~~i~~P~~  139 (230)
T TIGR01640        91 HHPLKSRGVCINGVLYYLAYTLKT-NPDYFIVSFDVSSERFKEFIPLPCG  139 (230)
T ss_pred             CccccCCeEEECCEEEEEEEECCC-CCcEEEEEEEcccceEeeeeecCcc
Confidence            222222245679999998754321 1222577778778899863345543

This model describes a large family of plant domains, with several hundred members in Arabidopsis thaliana. Most examples are found C-terminal to an F-box (pfam00646), a 60 amino acid motif involved in ubiquitination of target proteins to mark them for degradation. Two-hybid experiments support the idea that most members are interchangeable F-box subunits of SCF E3 complexes. Some members have two copies of this domain.

>PF07250 Glyoxal_oxid_N: Glyoxal oxidase N-terminus; InterPro: IPR009880 This entry represents the N terminus (approximately 300 residues) of a number of plant and fungal glyoxal oxidase enzymes

Probab=95.24  E-value=0.31  Score=45.26  Aligned_cols=154  Identities=14%  Similarity=0.073  Sum_probs=85.5

Q ss_pred             EEEEeCCCCCccCCCCCCCCcccCcccccccceEEECCEEEEEEcC---CCeEEEEECCC----CeEEEeecCCCCCCCC
Q 012227          277 YEIYDSLRNSWTRPGSMPSNIKLPVSLNFRSQAVSVDGILYFMRSD---PEGIVSYNMVT----GVWKQFIIPTPLHLND  349 (468)
Q Consensus       277 v~vy~s~t~~W~~~~~~p~~~~~~~~~~~~~~~v~~~G~lY~~~~~---~~~i~~fD~~~----~~w~~i~~P~p~~~~~  349 (468)
                      ..+||+.+++++.+... ..      .......+.-||.+...++.   ...+-.|++.+    ..|.+..-.+...+..
T Consensus        48 s~~yD~~tn~~rpl~v~-td------~FCSgg~~L~dG~ll~tGG~~~G~~~ir~~~p~~~~~~~~w~e~~~~m~~~RWY  120 (243)
T PF07250_consen   48 SVEYDPNTNTFRPLTVQ-TD------TFCSGGAFLPDGRLLQTGGDNDGNKAIRIFTPCTSDGTCDWTESPNDMQSGRWY  120 (243)
T ss_pred             EEEEecCCCcEEeccCC-CC------CcccCcCCCCCCCEEEeCCCCccccceEEEecCCCCCCCCceECcccccCCCcc
Confidence            57899999999877532 11      11122333358888777653   24577888865    6787754345666666


Q ss_pred             ceEEEE-CCeEEEEEEEeeCCccEEEEEEEecCCCCeEEEEeeChhhhhcccCcceEEEEEecCCEEEEEeeeCCCCeEE
Q 012227          350 HTLAEC-GGRIMLVGLLTKNAATCVCIWELQKMTLLWKEVDRMPNIWCLDFYGKHVRMTCLGNKGLLMLSLRSRQMNRLV  428 (468)
Q Consensus       350 ~~l~~~-~G~L~lv~~~~~~~~~~i~Vw~ld~~~~~W~~v~~mp~~~~~~~~~~~~~~~~~~~~~~I~~~~~~~~~~~l~  428 (468)
                      +....+ +|++.+|++...   .+.+.|--.........+.-+.. ..........++..+.-+|.||+...    ..-.
T Consensus       121 pT~~~L~DG~vlIvGG~~~---~t~E~~P~~~~~~~~~~~~~l~~-~~~~~~~nlYP~~~llPdG~lFi~an----~~s~  192 (243)
T PF07250_consen  121 PTATTLPDGRVLIVGGSNN---PTYEFWPPKGPGPGPVTLPFLSQ-TSDTLPNNLYPFVHLLPDGNLFIFAN----RGSI  192 (243)
T ss_pred             ccceECCCCCEEEEeCcCC---CcccccCCccCCCCceeeecchh-hhccCccccCceEEEcCCCCEEEEEc----CCcE
Confidence            666665 999999998653   23343311000111111111110 00001111224555555677776432    2467


Q ss_pred             EEECCCCcE-EEccCCcc
Q 012227          429 TYNVMSREW-LKVPGCVV  445 (468)
Q Consensus       429 ~YD~~t~~w-~~v~~~~~  445 (468)
                      .||..++++ +.++.+|-
T Consensus       193 i~d~~~n~v~~~lP~lPg  210 (243)
T PF07250_consen  193 IYDYKTNTVVRTLPDLPG  210 (243)
T ss_pred             EEeCCCCeEEeeCCCCCC
Confidence            889999977 78887663

Glyoxal oxidase catalyses the oxidation of aldehydes to carboxylic acids, coupled with reduction of dioxygen to hydrogen peroxide. It is an essential component of the extracellular lignin degradation pathways of the wood-rot fungus Phanerochaete chrysosporium [].

>PF07646 Kelch_2: Kelch motif; InterPro: IPR011498 Kelch is a 50-residue motif, named after the Drosophila mutant in which it was first identified []

Probab=95.02  E-value=0.072  Score=36.02  Aligned_cols=34  Identities=21%  Similarity=0.479  Sum_probs=28.3

Q ss_pred             ccceEEECCEEEEEEcC--------CCeEEEEECCCCeEEEe
Q 012227          306 RSQAVSVDGILYFMRSD--------PEGIVSYNMVTGVWKQF  339 (468)
Q Consensus       306 ~~~~v~~~G~lY~~~~~--------~~~i~~fD~~~~~w~~i  339 (468)
                      .+.+++++++||++++.        ...+..||+++.+|+.+
T Consensus         4 ~hs~~~~~~kiyv~GG~~~~~~~~~~~~v~~~d~~t~~W~~~   45 (49)
T PF07646_consen    4 GHSAVVLDGKIYVFGGYGTDNGGSSSNDVWVFDTETNQWTEL   45 (49)
T ss_pred             ceEEEEECCEEEEECCcccCCCCcccceeEEEECCCCEEeec
Confidence            45678899999999875        13588999999999987

This sequence motif represents one beta-sheet blade, and several of these repeats can associate to form a beta-propeller. For instance, the motif appears 6 times in Drosophila egg-chamber regulatory protein, creating a 6-bladed beta-propeller. The motif is also found in mouse protein MIPP [] and in a number of poxviruses. In addition, kelch repeats have been recognised in alpha- and beta-scruin [, ], and in galactose oxidase from the fungus Dactylium dendroides [, ]. The structure of galactose oxidase reveals that the repeated sequence corresponds to a 4-stranded anti-parallel beta-sheet motif that forms the repeat unit in a super-barrel structural fold []. The known functions of kelch-containing proteins are diverse: scruin is an actin cross-linking protein; galactose oxidase catalyses the oxidation of the hydroxyl group at the C6 position in D-galactose; neuraminidase hydrolyses sialic acid residues from glycoproteins; and kelch may have a cytoskeletal function, as it is localised to the actin-rich ring canals that connect the 15 nurse cells to the developing oocyte in Drosophila []. Nevertheless, based on the location of the kelch pattern in the catalytic unit in galactose oxidase, functionally important residues have been predicted in glyoxal oxidase []. This entry represents a type of kelch sequence motif that comprises one beta-sheet blade.; GO: 0005515 protein binding

>PRK11138 outer membrane biogenesis protein BamB; Provisional

Probab=94.71  E-value=5.4  Score=40.16  Aligned_cols=191  Identities=19%  Similarity=0.252  Sum_probs=96.5

Q ss_pred             cCceEEEEEcCCceEEEEcCCCCceE--ecCC-CCcCCcceeEEEEEEcCCCCCCCeEEEEEEecCcEEEEeCCCC--Cc
Q 012227          213 AGGLVCFLDIGHRNFYVCNPLTQSFK--ELPA-RSVKVWSRVAVGMTLNGNSTSSGYKILWVGCDGEYEIYDSLRN--SW  287 (468)
Q Consensus       213 ~~GLl~~~~~~~~~~~V~NP~T~~~~--~LP~-~~~~~~~~~~~~~~~d~~~~~~~ykVv~v~~~~~v~vy~s~t~--~W  287 (468)
                      .+|.|++... ...++.+|+.|++..  .-.. +........ .       +....-.|++...++.+..++..++  .|
T Consensus       159 ~~~~v~v~~~-~g~l~ald~~tG~~~W~~~~~~~~~~~~~~~-s-------P~v~~~~v~~~~~~g~v~a~d~~~G~~~W  229 (394)
T PRK11138        159 SDGLVLVHTS-NGMLQALNESDGAVKWTVNLDVPSLTLRGES-A-------PATAFGGAIVGGDNGRVSAVLMEQGQLIW  229 (394)
T ss_pred             ECCEEEEECC-CCEEEEEEccCCCEeeeecCCCCcccccCCC-C-------CEEECCEEEEEcCCCEEEEEEccCChhhh
Confidence            3677776543 347899999998843  2111 100000000 0       0000124554444555666776655  47


Q ss_pred             cCCCCCCCCc-ccCcccccccceEEECCEEEEEEcCCCeEEEEECCCC--eEEEeecCCCCCCCCceEEEECCeEEEEEE
Q 012227          288 TRPGSMPSNI-KLPVSLNFRSQAVSVDGILYFMRSDPEGIVSYNMVTG--VWKQFIIPTPLHLNDHTLAECGGRIMLVGL  364 (468)
Q Consensus       288 ~~~~~~p~~~-~~~~~~~~~~~~v~~~G~lY~~~~~~~~i~~fD~~~~--~w~~i~~P~p~~~~~~~l~~~~G~L~lv~~  364 (468)
                      +.....+... ...........++..+|.+|+.+.+ ..+.++|+.++  .|+.- ...     ...++..+|+||++..
T Consensus       230 ~~~~~~~~~~~~~~~~~~~~~sP~v~~~~vy~~~~~-g~l~ald~~tG~~~W~~~-~~~-----~~~~~~~~~~vy~~~~  302 (394)
T PRK11138        230 QQRISQPTGATEIDRLVDVDTTPVVVGGVVYALAYN-GNLVALDLRSGQIVWKRE-YGS-----VNDFAVDGGRIYLVDQ  302 (394)
T ss_pred             eeccccCCCccchhcccccCCCcEEECCEEEEEEcC-CeEEEEECCCCCEEEeec-CCC-----ccCcEEECCEEEEEcC
Confidence            6422111110 0000001124566789999987754 58999999876  47642 211     1234667888888653


Q ss_pred             EeeCCccEEEEEEEecCC--CCeEEEEeeChhhhhcccCcceEEEEEecCCEEEEEeeeCCCCeEEEEECCCCcEEE
Q 012227          365 LTKNAATCVCIWELQKMT--LLWKEVDRMPNIWCLDFYGKHVRMTCLGNKGLLMLSLRSRQMNRLVTYNVMSREWLK  439 (468)
Q Consensus       365 ~~~~~~~~i~Vw~ld~~~--~~W~~v~~mp~~~~~~~~~~~~~~~~~~~~~~I~~~~~~~~~~~l~~YD~~t~~w~~  439 (468)
                      ..       .++.++..+  ..|+.-. +....   ..    .. .+ .+|.||+..   ..+.++++|.++++..+
T Consensus       303 ~g-------~l~ald~~tG~~~W~~~~-~~~~~---~~----sp-~v-~~g~l~v~~---~~G~l~~ld~~tG~~~~  359 (394)
T PRK11138        303 ND-------RVYALDTRGGVELWSQSD-LLHRL---LT----AP-VL-YNGYLVVGD---SEGYLHWINREDGRFVA  359 (394)
T ss_pred             CC-------eEEEEECCCCcEEEcccc-cCCCc---cc----CC-EE-ECCEEEEEe---CCCEEEEEECCCCCEEE
Confidence            21       466666543  3565321 11100   00    11 12 368887642   24678899999886443

>COG4257 Vgb Streptogramin lyase [Defense mechanisms]

Probab=94.35  E-value=1  Score=42.11  Aligned_cols=120  Identities=17%  Similarity=0.289  Sum_probs=73.1

Q ss_pred             eeecCceEEEEEcCCceEEEEcCCCCceEecCCCCcCCcceeEEEEEEcCCCCCCCeEEEEEE--ecCcEEEEeCCCCCc
Q 012227          210 VASAGGLVCFLDIGHRNFYVCNPLTQSFKELPARSVKVWSRVAVGMTLNGNSTSSGYKILWVG--CDGEYEIYDSLRNSW  287 (468)
Q Consensus       210 ~~s~~GLl~~~~~~~~~~~V~NP~T~~~~~LP~~~~~~~~~~~~~~~~d~~~~~~~ykVv~v~--~~~~v~vy~s~t~~W  287 (468)
                      ++.-+|-|.+..-..+-+...||+++.-..+|.+.-......  ....|  +   ..++ ++.  +...+..||+.+.+|
T Consensus       195 ~atpdGsvwyaslagnaiaridp~~~~aev~p~P~~~~~gsR--riwsd--p---ig~~-wittwg~g~l~rfdPs~~sW  266 (353)
T COG4257         195 CATPDGSVWYASLAGNAIARIDPFAGHAEVVPQPNALKAGSR--RIWSD--P---IGRA-WITTWGTGSLHRFDPSVTSW  266 (353)
T ss_pred             EECCCCcEEEEeccccceEEcccccCCcceecCCCccccccc--ccccC--c---cCcE-EEeccCCceeeEeCcccccc
Confidence            667788887775555568899999998888887632111110  11222  1   1122 222  233589999999999


Q ss_pred             cCCCCCCCCcccCcccccccceEEE--CCEEEEEEcCCCeEEEEECCCCeEEEeecCCCC
Q 012227          288 TRPGSMPSNIKLPVSLNFRSQAVSV--DGILYFMRSDPEGIVSYNMVTGVWKQFIIPTPL  345 (468)
Q Consensus       288 ~~~~~~p~~~~~~~~~~~~~~~v~~--~G~lY~~~~~~~~i~~fD~~~~~w~~i~~P~p~  345 (468)
                      .+-.- |....       ....+++  .|.++.-....+.|..||+++.+|+++++|.+.
T Consensus       267 ~eypL-Pgs~a-------rpys~rVD~~grVW~sea~agai~rfdpeta~ftv~p~pr~n  318 (353)
T COG4257         267 IEYPL-PGSKA-------RPYSMRVDRHGRVWLSEADAGAIGRFDPETARFTVLPIPRPN  318 (353)
T ss_pred             eeeeC-CCCCC-------CcceeeeccCCcEEeeccccCceeecCcccceEEEecCCCCC
Confidence            87632 22111       1223333  466665455667899999999999997666553

>PF05096 Glu_cyclase_2: Glutamine cyclotransferase; InterPro: IPR007788 This family of enzymes 2

Probab=94.27  E-value=1.9  Score=40.43  Aligned_cols=165  Identities=14%  Similarity=0.107  Sum_probs=88.6

Q ss_pred             cEEEEeCCCCCccCCCCCCCCcccCcccccccceEEECCEEEEEEcCCCeEEEEECCCCeEEEeecCCCCCCCCceEEEE
Q 012227          276 EYEIYDSLRNSWTRPGSMPSNIKLPVSLNFRSQAVSVDGILYFMRSDPEGIVSYNMVTGVWKQFIIPTPLHLNDHTLAEC  355 (468)
Q Consensus       276 ~v~vy~s~t~~W~~~~~~p~~~~~~~~~~~~~~~v~~~G~lY~~~~~~~~i~~fD~~~~~w~~i~~P~p~~~~~~~l~~~  355 (468)
                      .+..||..+++=.....+|..       .|.-..+.+++++|.++...+..+.||..+-+-.. ..+.+  ..+-.|+.-
T Consensus        69 ~l~~~d~~tg~~~~~~~l~~~-------~FgEGit~~~d~l~qLTWk~~~~f~yd~~tl~~~~-~~~y~--~EGWGLt~d  138 (264)
T PF05096_consen   69 SLRKVDLETGKVLQSVPLPPR-------YFGEGITILGDKLYQLTWKEGTGFVYDPNTLKKIG-TFPYP--GEGWGLTSD  138 (264)
T ss_dssp             EEEEEETTTSSEEEEEE-TTT---------EEEEEEETTEEEEEESSSSEEEEEETTTTEEEE-EEE-S--SS--EEEEC
T ss_pred             EEEEEECCCCcEEEEEECCcc-------ccceeEEEECCEEEEEEecCCeEEEEccccceEEE-EEecC--CcceEEEcC
Confidence            388899988764333333332       23445567899999999988899999998643221 12222  233455544


Q ss_pred             CCeEEEEEEEeeCCccEEEEEEEecCCCCeEEEEeeChhhhhcccCcceEEEEEecCCEEEEEeeeCCCCeEEEEECCCC
Q 012227          356 GGRIMLVGLLTKNAATCVCIWELQKMTLLWKEVDRMPNIWCLDFYGKHVRMTCLGNKGLLMLSLRSRQMNRLVTYNVMSR  435 (468)
Q Consensus       356 ~G~L~lv~~~~~~~~~~i~Vw~ld~~~~~W~~v~~mp~~~~~~~~~~~~~~~~~~~~~~I~~~~~~~~~~~l~~YD~~t~  435 (468)
                      +..|++-.+.     .  .++.+|+.  ..+.+.++....-..-......+.++  +|.||..+  .....|+.-|++++
T Consensus       139 g~~Li~SDGS-----~--~L~~~dP~--~f~~~~~i~V~~~g~pv~~LNELE~i--~G~IyANV--W~td~I~~Idp~tG  205 (264)
T PF05096_consen  139 GKRLIMSDGS-----S--RLYFLDPE--TFKEVRTIQVTDNGRPVSNLNELEYI--NGKIYANV--WQTDRIVRIDPETG  205 (264)
T ss_dssp             SSCEEEE-SS-----S--EEEEE-TT--T-SEEEEEE-EETTEE---EEEEEEE--TTEEEEEE--TTSSEEEEEETTT-
T ss_pred             CCEEEEECCc-----c--ceEEECCc--ccceEEEEEEEECCEECCCcEeEEEE--cCEEEEEe--CCCCeEEEEeCCCC
Confidence            5555554331     2  67777874  34444444322111111111235565  68898754  34678999999999


Q ss_pred             cEEEccCCc-------cCCC-Cccceeeeeeeeeee
Q 012227          436 EWLKVPGCV-------VPRG-RKRQWIACGTAFHPC  463 (468)
Q Consensus       436 ~w~~v~~~~-------~~~~-~~~~~~~~g~~f~P~  463 (468)
                      +....=.+.       .... .+...++-|.||.|.
T Consensus       206 ~V~~~iDls~L~~~~~~~~~~~~~~dVLNGIAyd~~  241 (264)
T PF05096_consen  206 KVVGWIDLSGLRPEVGRDKSRQPDDDVLNGIAYDPE  241 (264)
T ss_dssp             BEEEEEE-HHHHHHHTSTTST--TTS-EEEEEEETT
T ss_pred             eEEEEEEhhHhhhcccccccccccCCeeEeEeEeCC
Confidence            877653221       0001 112468889999875

3.2.5 from EC catalyse the cyclization of free L-glutamine and N-terminal glutaminyl residues in proteins to pyroglutamate (5-oxoproline) and pyroglutamyl residues respectively []. This family includes plant and bacterial enzymes and seems unrelated to the mammalian enzymes.; PDB: 3NOK_B 2FAW_A 2IWA_A 3NOM_A 3NOL_A 3MBR_X.

>KOG4152 consensus Host cell transcription factor HCFC1 [Cell cycle control, cell division, chromosome partitioning; Transcription]

Probab=94.16  E-value=1.1  Score=45.21  Aligned_cols=115  Identities=18%  Similarity=0.289  Sum_probs=76.6

Q ss_pred             CCCeEEEEEEecC-----cEEEEeCCCCCccCCCCCCCCcccCcccccccceEEECCEEEEEEcC---------------
Q 012227          263 SSGYKILWVGCDG-----EYEIYDSLRNSWTRPGSMPSNIKLPVSLNFRSQAVSVDGILYFMRSD---------------  322 (468)
Q Consensus       263 ~~~ykVv~v~~~~-----~v~vy~s~t~~W~~~~~~p~~~~~~~~~~~~~~~v~~~G~lY~~~~~---------------  322 (468)
                      ++.-|.|+.|+..     +.+..|..+-+|.....-. -..+|.   ..+.++.+++++|++++-               
T Consensus       213 s~~skmvvyGGM~G~RLgDLW~Ldl~Tl~W~kp~~~G-~~PlPR---SLHsa~~IGnKMyvfGGWVPl~~~~~~~~~hek  288 (830)
T KOG4152|consen  213 SKKSKMVVYGGMSGCRLGDLWTLDLDTLTWNKPSLSG-VAPLPR---SLHSATTIGNKMYVFGGWVPLVMDDVKVATHEK  288 (830)
T ss_pred             CCcceEEEEcccccccccceeEEecceeecccccccC-CCCCCc---ccccceeecceeEEecceeeeeccccccccccc
Confidence            4456788777643     4788899999998764211 111222   235677899999998740               


Q ss_pred             ----CCeEEEEECCCCeEEEeecC------CCCCCCCceEEEECCeEEEEEEEee------CCccEEEEEEEecC
Q 012227          323 ----PEGIVSYNMVTGVWKQFIIP------TPLHLNDHTLAECGGRIMLVGLLTK------NAATCVCIWELQKM  381 (468)
Q Consensus       323 ----~~~i~~fD~~~~~w~~i~~P------~p~~~~~~~l~~~~G~L~lv~~~~~------~~~~~i~Vw~ld~~  381 (468)
                          ...+-+.|+++..|..+.+-      .|..+.+++.+..+.+||+-.+...      +...+-++|-||.+
T Consensus       289 EWkCTssl~clNldt~~W~tl~~d~~ed~tiPR~RAGHCAvAigtRlYiWSGRDGYrKAwnnQVCCkDlWyLdTe  363 (830)
T KOG4152|consen  289 EWKCTSSLACLNLDTMAWETLLMDTLEDNTIPRARAGHCAVAIGTRLYIWSGRDGYRKAWNNQVCCKDLWYLDTE  363 (830)
T ss_pred             eeeeccceeeeeecchheeeeeeccccccccccccccceeEEeccEEEEEeccchhhHhhccccchhhhhhhccc
Confidence                13577889999999876332      2344556788899999999876543      22345577877754

>smart00612 Kelch Kelch domain

Probab=94.08  E-value=0.13  Score=33.84  Aligned_cols=41  Identities=20%  Similarity=0.359  Sum_probs=28.5

Q ss_pred             EEEEEcC-----CCeEEEEECCCCeEEEeecCCCCCCCCceEEEECC
Q 012227          316 LYFMRSD-----PEGIVSYNMVTGVWKQFIIPTPLHLNDHTLAECGG  357 (468)
Q Consensus       316 lY~~~~~-----~~~i~~fD~~~~~w~~i~~P~p~~~~~~~l~~~~G  357 (468)
                      ||++++.     ...+..||+.+++|..+ .+++..+....++.++|
T Consensus         2 iyv~GG~~~~~~~~~v~~yd~~~~~W~~~-~~~~~~r~~~~~~~~~g   47 (47)
T smart00612        2 IYVVGGFDGGQRLKSVEVYDPETNKWTPL-PSMPTPRSGHGVAVING   47 (47)
T ss_pred             EEEEeCCCCCceeeeEEEECCCCCeEccC-CCCCCccccceEEEeCC
Confidence            5666542     13588999999999987 46776666666666654

>PF02191 OLF: Olfactomedin-like domain; InterPro: IPR003112 The olfactomedin-domain was first identified in olfactomedin, an extracellular matrix protein of the olfactory neuroepithelium []

Probab=94.07  E-value=2.8  Score=39.26  Aligned_cols=127  Identities=15%  Similarity=0.185  Sum_probs=78.4

Q ss_pred             cceEEECCEEEEEEcCCCeEEEEECCCCeEE-EeecCCCCCC----------CCceEEEECCeEEEEEEEeeCCccEEEE
Q 012227          307 SQAVSVDGILYFMRSDPEGIVSYNMVTGVWK-QFIIPTPLHL----------NDHTLAECGGRIMLVGLLTKNAATCVCI  375 (468)
Q Consensus       307 ~~~v~~~G~lY~~~~~~~~i~~fD~~~~~w~-~i~~P~p~~~----------~~~~l~~~~G~L~lv~~~~~~~~~~i~V  375 (468)
                      ..-|+.||.+|+-......|+.||+.++.-. ...+|.....          ....+++-+..|.+|-.... ....+.|
T Consensus        72 tG~vVYngslYY~~~~s~~IvkydL~t~~v~~~~~L~~A~~~n~~~y~~~~~t~iD~AvDE~GLWvIYat~~-~~g~ivv  150 (250)
T PF02191_consen   72 TGHVVYNGSLYYNKYNSRNIVKYDLTTRSVVARRELPGAGYNNRFPYYWSGYTDIDFAVDENGLWVIYATED-NNGNIVV  150 (250)
T ss_pred             CCeEEECCcEEEEecCCceEEEEECcCCcEEEEEECCccccccccceecCCCceEEEEEcCCCEEEEEecCC-CCCcEEE
Confidence            4566789999998887789999999999877 5555543221          12556777888888765443 2234777


Q ss_pred             EEEecCC----CCeEEEEeeChhhhhcccCcceEEEEEecCCEEEEEeeeC--CCCeEEEEECCCCcEEEccCCccC
Q 012227          376 WELQKMT----LLWKEVDRMPNIWCLDFYGKHVRMTCLGNKGLLMLSLRSR--QMNRLVTYNVMSREWLKVPGCVVP  446 (468)
Q Consensus       376 w~ld~~~----~~W~~v~~mp~~~~~~~~~~~~~~~~~~~~~~I~~~~~~~--~~~~l~~YD~~t~~w~~v~~~~~~  446 (468)
                      =++|+.+    ..|..  .++......         ++..-|.+|......  ....-++||+.+++-+.+ ..+++
T Consensus       151 skld~~tL~v~~tw~T--~~~k~~~~n---------aFmvCGvLY~~~s~~~~~~~I~yafDt~t~~~~~~-~i~f~  215 (250)
T PF02191_consen  151 SKLDPETLSVEQTWNT--SYPKRSAGN---------AFMVCGVLYATDSYDTRDTEIFYAFDTYTGKEEDV-SIPFP  215 (250)
T ss_pred             EeeCcccCceEEEEEe--ccCchhhcc---------eeeEeeEEEEEEECCCCCcEEEEEEECCCCceece-eeeec
Confidence            8888753    45653  233332221         222236787633222  133458999998877654 33443

Members of this extracellular domain-family have since been shown to be present in several metazoan proteins, such as latrophilins, myocilins, optimedins and noelins, the latter being involved in the generation of neural crest cells. Myocilin is of considerable interest, as mutations in its olfactomedin-domain can lead to glaucoma []. The olfactomedin-domains in myocilin and optimedin are essential for the interaction between these two proteins [].; GO: 0005515 protein binding

>PF13418 Kelch_4: Galactose oxidase, central domain; PDB: 2UVK_B

Probab=93.43  E-value=0.19  Score=33.79  Aligned_cols=33  Identities=12%  Similarity=0.347  Sum_probs=18.7

Q ss_pred             CCEEEEEeeeC----CCCeEEEEECCCCcEEEccCCc
Q 012227          412 KGLLMLSLRSR----QMNRLVTYNVMSREWLKVPGCV  444 (468)
Q Consensus       412 ~~~I~~~~~~~----~~~~l~~YD~~t~~w~~v~~~~  444 (468)
                      ++.||+..+..    ....++.||+++++|++++.+|
T Consensus        12 ~~~i~v~GG~~~~~~~~~d~~~~d~~~~~W~~~~~~P   48 (49)
T PF13418_consen   12 DNSIYVFGGRDSSGSPLNDLWIFDIETNTWTRLPSMP   48 (49)
T ss_dssp             TTEEEEE--EEE-TEE---EEEEETTTTEEEE--SS-
T ss_pred             CCeEEEECCCCCCCcccCCEEEEECCCCEEEECCCCC
Confidence            46666633221    2347899999999999997665

>smart00284 OLF Olfactomedin-like domains

Probab=93.34  E-value=2.8  Score=39.18  Aligned_cols=127  Identities=15%  Similarity=0.183  Sum_probs=76.4

Q ss_pred             cceEEECCEEEEEEcCCCeEEEEECCCCeEEEe-ecCCCC----------CCCCceEEEECCeEEEEEEEeeCCccEEEE
Q 012227          307 SQAVSVDGILYFMRSDPEGIVSYNMVTGVWKQF-IIPTPL----------HLNDHTLAECGGRIMLVGLLTKNAATCVCI  375 (468)
Q Consensus       307 ~~~v~~~G~lY~~~~~~~~i~~fD~~~~~w~~i-~~P~p~----------~~~~~~l~~~~G~L~lv~~~~~~~~~~i~V  375 (468)
                      ..-|+.||.+|+-......|+.||+.+++-... .+|...          ......+++-+..|.+|-.... ....|.|
T Consensus        77 tG~VVYngslYY~~~~s~~iiKydL~t~~v~~~~~Lp~a~y~~~~~Y~~~~~sdiDlAvDE~GLWvIYat~~-~~g~ivv  155 (255)
T smart00284       77 TGVVVYNGSLYFNKFNSHDICRFDLTTETYQKEPLLNGAGYNNRFPYAWGGFSDIDLAVDENGLWVIYATEQ-NAGKIVI  155 (255)
T ss_pred             ccEEEECceEEEEecCCccEEEEECCCCcEEEEEecCccccccccccccCCCccEEEEEcCCceEEEEeccC-CCCCEEE
Confidence            456778999999876667899999999987533 245321          1123567787888888765432 3356777


Q ss_pred             EEEecCC----CCeEEEEeeChhhhhcccCcceEEEEEecCCEEEEEee--eCCCCeEEEEECCCCcEEEccCCccC
Q 012227          376 WELQKMT----LLWKEVDRMPNIWCLDFYGKHVRMTCLGNKGLLMLSLR--SRQMNRLVTYNVMSREWLKVPGCVVP  446 (468)
Q Consensus       376 w~ld~~~----~~W~~v~~mp~~~~~~~~~~~~~~~~~~~~~~I~~~~~--~~~~~~l~~YD~~t~~w~~v~~~~~~  446 (468)
                      =+|++.+    ..|..  ..+..-..+         ++..-|.+|+...  .......++||..+++-+. ...+++
T Consensus       156 SkLnp~tL~ve~tW~T--~~~k~sa~n---------aFmvCGvLY~~~s~~~~~~~I~yayDt~t~~~~~-~~i~f~  220 (255)
T smart00284      156 SKLNPATLTIENTWIT--TYNKRSASN---------AFMICGILYVTRSLGSKGEKVFYAYDTNTGKEGH-LDIPFE  220 (255)
T ss_pred             EeeCcccceEEEEEEc--CCCcccccc---------cEEEeeEEEEEccCCCCCcEEEEEEECCCCccce-eeeeec
Confidence            8888753    45544  233222111         1112267776432  1223346899999987443 444444

>PTZ00421 coronin; Provisional

Probab=93.23  E-value=12  Score=38.95  Aligned_cols=154  Identities=12%  Similarity=0.168  Sum_probs=70.7

Q ss_pred             EEEEEEecCcEEEEeCCCCCccCCCCCCCCcccCcccccccceEE--ECCEEEEEEcCCCeEEEEECCCCeEEEeecCCC
Q 012227          267 KILWVGCDGEYEIYDSLRNSWTRPGSMPSNIKLPVSLNFRSQAVS--VDGILYFMRSDPEGIVSYNMVTGVWKQFIIPTP  344 (468)
Q Consensus       267 kVv~v~~~~~v~vy~s~t~~W~~~~~~p~~~~~~~~~~~~~~~v~--~~G~lY~~~~~~~~i~~fD~~~~~w~~i~~P~p  344 (468)
                      .++..+.++.+.+||..++.-.  ..+.....       .-..+.  -+|.+.+.+.....|-.||+.+++-... +...
T Consensus       140 iLaSgs~DgtVrIWDl~tg~~~--~~l~~h~~-------~V~sla~spdG~lLatgs~Dg~IrIwD~rsg~~v~t-l~~H  209 (493)
T PTZ00421        140 VLASAGADMVVNVWDVERGKAV--EVIKCHSD-------QITSLEWNLDGSLLCTTSKDKKLNIIDPRDGTIVSS-VEAH  209 (493)
T ss_pred             EEEEEeCCCEEEEEECCCCeEE--EEEcCCCC-------ceEEEEEECCCCEEEEecCCCEEEEEECCCCcEEEE-EecC
Confidence            3444455667999998875421  11110000       011122  2576666666667888999987653221 2111


Q ss_pred             CCCCCceEEE-ECCeEEEEEEEeeCCccEEEEEEEecCCCCeEEEEeeChhhhhcccCcceEEEEEe-cCCEEEEEeeeC
Q 012227          345 LHLNDHTLAE-CGGRIMLVGLLTKNAATCVCIWELQKMTLLWKEVDRMPNIWCLDFYGKHVRMTCLG-NKGLLMLSLRSR  422 (468)
Q Consensus       345 ~~~~~~~l~~-~~G~L~lv~~~~~~~~~~i~Vw~ld~~~~~W~~v~~mp~~~~~~~~~~~~~~~~~~-~~~~I~~~~~~~  422 (468)
                      .......+.. .++.+.+..+........+.+|.+.......... .+...     .  ...+..+. .++.+++.  +.
T Consensus       210 ~~~~~~~~~w~~~~~~ivt~G~s~s~Dr~VklWDlr~~~~p~~~~-~~d~~-----~--~~~~~~~d~d~~~L~lg--gk  279 (493)
T PTZ00421        210 ASAKSQRCLWAKRKDLIITLGCSKSQQRQIMLWDTRKMASPYSTV-DLDQS-----S--ALFIPFFDEDTNLLYIG--SK  279 (493)
T ss_pred             CCCcceEEEEcCCCCeEEEEecCCCCCCeEEEEeCCCCCCceeEe-ccCCC-----C--ceEEEEEcCCCCEEEEE--Ee
Confidence            1111111221 2333434333322234678999765432221111 11100     0  01111222 34555543  22


Q ss_pred             CCCeEEEEECCCCcEEEc
Q 012227          423 QMNRLVTYNVMSREWLKV  440 (468)
Q Consensus       423 ~~~~l~~YD~~t~~w~~v  440 (468)
                      ..+.+.+||+.+++....
T Consensus       280 gDg~Iriwdl~~~~~~~~  297 (493)
T PTZ00421        280 GEGNIRCFELMNERLTFC  297 (493)
T ss_pred             CCCeEEEEEeeCCceEEE
Confidence            346789999998876554

>KOG2437 consensus Muskelin [Signal transduction mechanisms]

Probab=92.89  E-value=0.22  Score=49.86  Aligned_cols=136  Identities=13%  Similarity=0.109  Sum_probs=83.7

Q ss_pred             ccccceEEECC--EEEEEEcCC-----CeEEEEECCCCeEEEeecC--CCCCCCCceEEE--ECCeEEEEEEEee-----
Q 012227          304 NFRSQAVSVDG--ILYFMRSDP-----EGIVSYNMVTGVWKQFIIP--TPLHLNDHTLAE--CGGRIMLVGLLTK-----  367 (468)
Q Consensus       304 ~~~~~~v~~~G--~lY~~~~~~-----~~i~~fD~~~~~w~~i~~P--~p~~~~~~~l~~--~~G~L~lv~~~~~-----  367 (468)
                      +..++.|...|  ++|..++-.     .-...|....+.|..+..-  .|..+..+.++.  ...+||+++.+-.     
T Consensus       261 RgGHQMV~~~~~~CiYLYGGWdG~~~l~DFW~Y~v~e~~W~~iN~~t~~PG~RsCHRMVid~S~~KLYLlG~Y~~sS~r~  340 (723)
T KOG2437|consen  261 RGGHQMVIDVQTECVYLYGGWDGTQDLADFWAYSVKENQWTCINRDTEGPGARSCHRMVIDISRRKLYLLGRYLDSSVRN  340 (723)
T ss_pred             cCcceEEEeCCCcEEEEecCcccchhHHHHHhhcCCcceeEEeecCCCCCcchhhhhhhhhhhHhHHhhhhhcccccccc
Confidence            34577888777  999988632     1245688999999998543  244445555553  4569999886532     


Q ss_pred             CCccEEEEEEEecCCCCeEEEEeeChhhhhcccCc--ceEEEEEecCCEEEEEeeeC------CCCeEEEEECCCCcEEE
Q 012227          368 NAATCVCIWELQKMTLLWKEVDRMPNIWCLDFYGK--HVRMTCLGNKGLLMLSLRSR------QMNRLVTYNVMSREWLK  439 (468)
Q Consensus       368 ~~~~~i~Vw~ld~~~~~W~~v~~mp~~~~~~~~~~--~~~~~~~~~~~~I~~~~~~~------~~~~l~~YD~~t~~w~~  439 (468)
                      .....-++|++|-.++.|..+. +...--. -.+.  .-.+.+.+..+.||+..+..      ..+.++.||.....|..
T Consensus       341 ~~s~RsDfW~FDi~~~~W~~ls-~dt~~dG-GP~~vfDHqM~Vd~~k~~iyVfGGr~~~~~e~~f~GLYaf~~~~~~w~~  418 (723)
T KOG2437|consen  341 SKSLRSDFWRFDIDTNTWMLLS-EDTAADG-GPKLVFDHQMCVDSEKHMIYVFGGRILTCNEPQFSGLYAFNCQCQTWKL  418 (723)
T ss_pred             ccccccceEEEecCCceeEEec-ccccccC-CcceeecceeeEecCcceEEEecCeeccCCCccccceEEEecCCccHHH
Confidence            1123458999999999998762 2111000 0000  11344445566677643221      34579999999999987


Q ss_pred             cc
Q 012227          440 VP  441 (468)
Q Consensus       440 v~  441 (468)
                      +.
T Consensus       419 l~  420 (723)
T KOG2437|consen  419 LR  420 (723)
T ss_pred             HH
Confidence            64

>PF13415 Kelch_3: Galactose oxidase, central domain

Probab=92.75  E-value=0.22  Score=33.64  Aligned_cols=23  Identities=17%  Similarity=0.507  Sum_probs=20.3

Q ss_pred             CeEEEEECCCCcEEEccCCccCC
Q 012227          425 NRLVTYNVMSREWLKVPGCVVPR  447 (468)
Q Consensus       425 ~~l~~YD~~t~~w~~v~~~~~~~  447 (468)
                      +.+++||+++++|++++..|.+|
T Consensus        19 nd~~~~~~~~~~W~~~~~~P~~R   41 (49)
T PF13415_consen   19 NDVWVFDLDTNTWTRIGDLPPPR   41 (49)
T ss_pred             cCEEEEECCCCEEEECCCCCCCc
Confidence            57899999999999998877765

>PF13360 PQQ_2: PQQ-like domain; PDB: 3HXJ_B 1YIQ_A 1KV9_A 3Q54_A 2YH3_A 3PRW_A 3P1L_A 3Q7M_A 3Q7O_A 3Q7N_A

Probab=92.62  E-value=8.1  Score=35.34  Aligned_cols=153  Identities=20%  Similarity=0.273  Sum_probs=77.6

Q ss_pred             EEEEEEecCcEEEEeCCCCC--ccCCCCCCCCcccCcccccccceEEECCEEEEEEcCCCeEEEEECCCC--eEEEeecC
Q 012227          267 KILWVGCDGEYEIYDSLRNS--WTRPGSMPSNIKLPVSLNFRSQAVSVDGILYFMRSDPEGIVSYNMVTG--VWKQFIIP  342 (468)
Q Consensus       267 kVv~v~~~~~v~vy~s~t~~--W~~~~~~p~~~~~~~~~~~~~~~v~~~G~lY~~~~~~~~i~~fD~~~~--~w~~i~~P  342 (468)
                      +|++....+.+..+|..+++  |+.-.  +..        .....+..++.+|+...+ ..+.++|..++  .|+.....
T Consensus        38 ~v~~~~~~~~l~~~d~~tG~~~W~~~~--~~~--------~~~~~~~~~~~v~v~~~~-~~l~~~d~~tG~~~W~~~~~~  106 (238)
T PF13360_consen   38 RVYVASGDGNLYALDAKTGKVLWRFDL--PGP--------ISGAPVVDGGRVYVGTSD-GSLYALDAKTGKVLWSIYLTS  106 (238)
T ss_dssp             EEEEEETTSEEEEEETTTSEEEEEEEC--SSC--------GGSGEEEETTEEEEEETT-SEEEEEETTTSCEEEEEEE-S
T ss_pred             EEEEEcCCCEEEEEECCCCCEEEEeec--ccc--------ccceeeecccccccccce-eeeEecccCCcceeeeecccc
Confidence            55555556678999976654  76432  111        122357789999998854 48999997765  67732222


Q ss_pred             CCC-CC-CCceEEEECCeEEEEEEEeeCCccEEEEEEEecC--CCCeEEEEeeChhhhhcccCcceEEEEEecCCEEEEE
Q 012227          343 TPL-HL-NDHTLAECGGRIMLVGLLTKNAATCVCIWELQKM--TLLWKEVDRMPNIWCLDFYGKHVRMTCLGNKGLLMLS  418 (468)
Q Consensus       343 ~p~-~~-~~~~l~~~~G~L~lv~~~~~~~~~~i~Vw~ld~~--~~~W~~v~~mp~~~~~~~~~~~~~~~~~~~~~~I~~~  418 (468)
                      .+. .. ........++.+++.. ...      .|+.++..  +..|+.-...+................+..++.||+.
T Consensus       107 ~~~~~~~~~~~~~~~~~~~~~~~-~~g------~l~~~d~~tG~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~  179 (238)
T PF13360_consen  107 SPPAGVRSSSSPAVDGDRLYVGT-SSG------KLVALDPKTGKLLWKYPVGEPRGSSPISSFSDINGSPVISDGRVYVS  179 (238)
T ss_dssp             SCTCSTB--SEEEEETTEEEEEE-TCS------EEEEEETTTTEEEEEEESSTT-SS--EEEETTEEEEEECCTTEEEEE
T ss_pred             ccccccccccCceEecCEEEEEe-ccC------cEEEEecCCCcEEEEeecCCCCCCcceeeecccccceEEECCEEEEE
Confidence            111 11 1223333455555433 111      55666644  3466664433321110000000112333345677764


Q ss_pred             eeeCCCCeEEEEECCCCc--EEEc
Q 012227          419 LRSRQMNRLVTYNVMSRE--WLKV  440 (468)
Q Consensus       419 ~~~~~~~~l~~YD~~t~~--w~~v  440 (468)
                      ..   .+.++.+|..+++  |+..
T Consensus       180 ~~---~g~~~~~d~~tg~~~w~~~  200 (238)
T PF13360_consen  180 SG---DGRVVAVDLATGEKLWSKP  200 (238)
T ss_dssp             CC---TSSEEEEETTTTEEEEEEC
T ss_pred             cC---CCeEEEEECCCCCEEEEec
Confidence            32   2346777999997  6443

...

>PF10282 Lactonase: Lactonase, 7-bladed beta-propeller; InterPro: IPR019405 6-phosphogluconolactonases (6PGL) 3

Probab=92.56  E-value=8.8  Score=37.84  Aligned_cols=123  Identities=13%  Similarity=0.209  Sum_probs=68.2

Q ss_pred             CEEEEEEcCCCeEEEEECCCCe--EEE---eecCCCCCCCCceEEEE-CC-eEEEEEEEeeCCccEEEEEEEecCCCCeE
Q 012227          314 GILYFMRSDPEGIVSYNMVTGV--WKQ---FIIPTPLHLNDHTLAEC-GG-RIMLVGLLTKNAATCVCIWELQKMTLLWK  386 (468)
Q Consensus       314 G~lY~~~~~~~~i~~fD~~~~~--w~~---i~~P~p~~~~~~~l~~~-~G-~L~lv~~~~~~~~~~i~Vw~ld~~~~~W~  386 (468)
                      ..+|+.....+.|..|+...+.  +..   +.+|.  ...-+.++.. +| .+|++.    +....+.++.++..+..++
T Consensus       156 ~~v~v~dlG~D~v~~~~~~~~~~~l~~~~~~~~~~--G~GPRh~~f~pdg~~~Yv~~----e~s~~v~v~~~~~~~g~~~  229 (345)
T PF10282_consen  156 RFVYVPDLGADRVYVYDIDDDTGKLTPVDSIKVPP--GSGPRHLAFSPDGKYAYVVN----ELSNTVSVFDYDPSDGSLT  229 (345)
T ss_dssp             SEEEEEETTTTEEEEEEE-TTS-TEEEEEEEECST--TSSEEEEEE-TTSSEEEEEE----TTTTEEEEEEEETTTTEEE
T ss_pred             CEEEEEecCCCEEEEEEEeCCCceEEEeecccccc--CCCCcEEEEcCCcCEEEEec----CCCCcEEEEeecccCCcee
Confidence            3466666666789999987765  533   22332  2222344443 55 455554    3346889999996667777


Q ss_pred             EEEeeChhhhhcccCc-ce-EEEEEecCCEEEEEeeeCCCCeEEEEEC--CCCcEEEccCCcc
Q 012227          387 EVDRMPNIWCLDFYGK-HV-RMTCLGNKGLLMLSLRSRQMNRLVTYNV--MSREWLKVPGCVV  445 (468)
Q Consensus       387 ~v~~mp~~~~~~~~~~-~~-~~~~~~~~~~I~~~~~~~~~~~l~~YD~--~t~~w~~v~~~~~  445 (468)
                      .+..++..-. .+.+. .. .+....++..||+..+.  .+.|.+|++  ++++.+.+...+.
T Consensus       230 ~~~~~~~~~~-~~~~~~~~~~i~ispdg~~lyvsnr~--~~sI~vf~~d~~~g~l~~~~~~~~  289 (345)
T PF10282_consen  230 EIQTISTLPE-GFTGENAPAEIAISPDGRFLYVSNRG--SNSISVFDLDPATGTLTLVQTVPT  289 (345)
T ss_dssp             EEEEEESCET-TSCSSSSEEEEEE-TTSSEEEEEECT--TTEEEEEEECTTTTTEEEEEEEEE
T ss_pred             EEEEeeeccc-cccccCCceeEEEecCCCEEEEEecc--CCEEEEEEEecCCCceEEEEEEeC
Confidence            7665532211 11111 11 22222356778875543  578888887  5567877765554

1.1.31 from EC, which hydrolyses 6-phosphogluconolactone to 6-phosphogluconate is opne of the enzymes in the pentose phosphate pathway. Two families of structurally dissimilar 6PGLs are known to exist: the Escherichia coli (strain K12) YbhE IPR022528 from INTERPRO [] and the Pseudomonas aeruginosa DevB IPR005900 from INTERPRO [] types. This entry contains bacterial 6-phosphogluconolactonases (6PGL) YbhE-type 3.1.1.31 from EC which hydrolyse 6-phosphogluconolactone to 6-phosphogluconate. The entry also contains the fungal muconate lactonizing enzyme carboxy-cis,cis-muconate cyclase 5.5.1.5 from EC and muconate cycloisomerase 5.5.1.1 from EC, which convert cis,cis-muconates to muconolactones and vice versa as part of the microbial beta-ketoadipate pathway. Structures have been reported for the E. coli 6-phosphogluconolactonase and Neurospora crassa muconate cycloisomerase. Structures of proteins in this family have revealed a 7-bladed beta-propeller fold [].; PDB: 3SCY_A 1L0Q_A 3HFQ_B 3FGB_A 1RI6_A 3U4Y_A 3BWS_A 1JOF_H.

>PF13415 Kelch_3: Galactose oxidase, central domain

Probab=92.44  E-value=0.12  Score=34.88  Aligned_cols=40  Identities=15%  Similarity=0.381  Sum_probs=30.9

Q ss_pred             CCeEEEEEEEee-CCccEEEEEEEecCCCCeEEEEeeChhh
Q 012227          356 GGRIMLVGLLTK-NAATCVCIWELQKMTLLWKEVDRMPNIW  395 (468)
Q Consensus       356 ~G~L~lv~~~~~-~~~~~i~Vw~ld~~~~~W~~v~~mp~~~  395 (468)
                      +++||++++... .....-++|+++..+.+|+++..+|..+
T Consensus         1 g~~~~vfGG~~~~~~~~~nd~~~~~~~~~~W~~~~~~P~~R   41 (49)
T PF13415_consen    1 GNKLYVFGGYDDDGGTRLNDVWVFDLDTNTWTRIGDLPPPR   41 (49)
T ss_pred             CCEEEEECCcCCCCCCEecCEEEEECCCCEEEECCCCCCCc
Confidence            578889888762 3445568999999999999997777654

>PF13360 PQQ_2: PQQ-like domain; PDB: 3HXJ_B 1YIQ_A 1KV9_A 3Q54_A 2YH3_A 3PRW_A 3P1L_A 3Q7M_A 3Q7O_A 3Q7N_A

Probab=91.44  E-value=11  Score=34.41  Aligned_cols=184  Identities=19%  Similarity=0.232  Sum_probs=96.7

Q ss_pred             cCceEEEEEcCCceEEEEcCCCCceE---ecCCCCcCCcceeEEEEEEcCCCCCCCeEEEEEEecCcEEEEeCCCC--Cc
Q 012227          213 AGGLVCFLDIGHRNFYVCNPLTQSFK---ELPARSVKVWSRVAVGMTLNGNSTSSGYKILWVGCDGEYEIYDSLRN--SW  287 (468)
Q Consensus       213 ~~GLl~~~~~~~~~~~V~NP~T~~~~---~LP~~~~~~~~~~~~~~~~d~~~~~~~ykVv~v~~~~~v~vy~s~t~--~W  287 (468)
                      .+|.+++.. ....++.+|+.|++..   .++.. ....     ....+       -+|++...++.+..+|..++  .|
T Consensus        35 ~~~~v~~~~-~~~~l~~~d~~tG~~~W~~~~~~~-~~~~-----~~~~~-------~~v~v~~~~~~l~~~d~~tG~~~W  100 (238)
T PF13360_consen   35 DGGRVYVAS-GDGNLYALDAKTGKVLWRFDLPGP-ISGA-----PVVDG-------GRVYVGTSDGSLYALDAKTGKVLW  100 (238)
T ss_dssp             ETTEEEEEE-TTSEEEEEETTTSEEEEEEECSSC-GGSG-----EEEET-------TEEEEEETTSEEEEEETTTSCEEE
T ss_pred             eCCEEEEEc-CCCEEEEEECCCCCEEEEeecccc-ccce-----eeecc-------cccccccceeeeEecccCCcceee
Confidence            677777764 3458999999999854   23221 1111     12222       35665555556888886654  48


Q ss_pred             cC-CCCCCCCcccCcccccccceEEECCEEEEEEcCCCeEEEEECCCCe--EEEeecCCCCCCC--------CceEEEEC
Q 012227          288 TR-PGSMPSNIKLPVSLNFRSQAVSVDGILYFMRSDPEGIVSYNMVTGV--WKQFIIPTPLHLN--------DHTLAECG  356 (468)
Q Consensus       288 ~~-~~~~p~~~~~~~~~~~~~~~v~~~G~lY~~~~~~~~i~~fD~~~~~--w~~i~~P~p~~~~--------~~~l~~~~  356 (468)
                      +. ....+.. .    ........+.++.+|+... ...|.++|+.+++  |..- ...+....        ...++..+
T Consensus       101 ~~~~~~~~~~-~----~~~~~~~~~~~~~~~~~~~-~g~l~~~d~~tG~~~w~~~-~~~~~~~~~~~~~~~~~~~~~~~~  173 (238)
T PF13360_consen  101 SIYLTSSPPA-G----VRSSSSPAVDGDRLYVGTS-SGKLVALDPKTGKLLWKYP-VGEPRGSSPISSFSDINGSPVISD  173 (238)
T ss_dssp             EEEE-SSCTC-S----TB--SEEEEETTEEEEEET-CSEEEEEETTTTEEEEEEE-SSTT-SS--EEEETTEEEEEECCT
T ss_pred             eecccccccc-c----cccccCceEecCEEEEEec-cCcEEEEecCCCcEEEEee-cCCCCCCcceeeecccccceEEEC
Confidence            73 3221111 0    0112223334777777664 4689999998764  5542 33322111        12333346


Q ss_pred             CeEEEEEEEeeCCccEEEEEEEecCCC--CeEEEEeeChhhhhcccCcceEEEEEecCCEEEEEeeeCCCCeEEEEECCC
Q 012227          357 GRIMLVGLLTKNAATCVCIWELQKMTL--LWKEVDRMPNIWCLDFYGKHVRMTCLGNKGLLMLSLRSRQMNRLVTYNVMS  434 (468)
Q Consensus       357 G~L~lv~~~~~~~~~~i~Vw~ld~~~~--~W~~v~~mp~~~~~~~~~~~~~~~~~~~~~~I~~~~~~~~~~~l~~YD~~t  434 (468)
                      |.+|+....    ..   +..+|..++  .|+. . +...          .......++.||+..   ..+.++++|+++
T Consensus       174 ~~v~~~~~~----g~---~~~~d~~tg~~~w~~-~-~~~~----------~~~~~~~~~~l~~~~---~~~~l~~~d~~t  231 (238)
T PF13360_consen  174 GRVYVSSGD----GR---VVAVDLATGEKLWSK-P-ISGI----------YSLPSVDGGTLYVTS---SDGRLYALDLKT  231 (238)
T ss_dssp             TEEEEECCT----SS---EEEEETTTTEEEEEE-C-SS-E----------CECEECCCTEEEEEE---TTTEEEEEETTT
T ss_pred             CEEEEEcCC----Ce---EEEEECCCCCEEEEe-c-CCCc----------cCCceeeCCEEEEEe---CCCEEEEEECCC
Confidence            766664421    12   333344433  3732 2 2210          011345678887743   357999999999


Q ss_pred             CcEEE
Q 012227          435 REWLK  439 (468)
Q Consensus       435 ~~w~~  439 (468)
                      ++..+
T Consensus       232 G~~~W  236 (238)
T PF13360_consen  232 GKVVW  236 (238)
T ss_dssp             TEEEE
T ss_pred             CCEEe
Confidence            97554

...

>COG4257 Vgb Streptogramin lyase [Defense mechanisms]

Probab=91.20  E-value=13  Score=34.91  Aligned_cols=216  Identities=13%  Similarity=0.159  Sum_probs=114.9

Q ss_pred             ecCCCCcccCCCCCCCCCCcEEEEeeecCceEEEEEcCCceEEEEcCCCCceEecCCCCcCCcceeEEEEEEcCCCCCCC
Q 012227          186 YDPSLKKWHHPTISSLPTKMIILPVASAGGLVCFLDIGHRNFYVCNPLTQSFKELPARSVKVWSRVAVGMTLNGNSTSSG  265 (468)
Q Consensus       186 ~dp~~~~w~~~~l~~~p~~~~~~~~~s~~GLl~~~~~~~~~~~V~NP~T~~~~~LP~~~~~~~~~~~~~~~~d~~~~~~~  265 (468)
                      .||.++.....+|..-...+.++ ++-.++.-+. +... .+.-++|.|.+..+.|.+...-.. ..-..++|+     .
T Consensus        88 LdP~tGev~~ypLg~Ga~Phgiv-~gpdg~~Wit-d~~~-aI~R~dpkt~evt~f~lp~~~a~~-nlet~vfD~-----~  158 (353)
T COG4257          88 LDPATGEVETYPLGSGASPHGIV-VGPDGSAWIT-DTGL-AIGRLDPKTLEVTRFPLPLEHADA-NLETAVFDP-----W  158 (353)
T ss_pred             cCCCCCceEEEecCCCCCCceEE-ECCCCCeeEe-cCcc-eeEEecCcccceEEeecccccCCC-cccceeeCC-----C
Confidence            45655554444444332233333 5555543333 2222 688899999998887765211111 111123442     1


Q ss_pred             eEEEEEEecC----------cEEEEeCCCCCccCCCCCCCCcccCcccccccceEEECCEEEEEEcCCCeEEEEECCCCe
Q 012227          266 YKILWVGCDG----------EYEIYDSLRNSWTRPGSMPSNIKLPVSLNFRSQAVSVDGILYFMRSDPEGIVSYNMVTGV  335 (468)
Q Consensus       266 ykVv~v~~~~----------~v~vy~s~t~~W~~~~~~p~~~~~~~~~~~~~~~v~~~G~lY~~~~~~~~i~~fD~~~~~  335 (468)
                      ..+-..+..+          .++||..-.+.      -|           +.-++.-+|.+|+-....+.|.-.|+.+..
T Consensus       159 G~lWFt~q~G~yGrLdPa~~~i~vfpaPqG~------gp-----------yGi~atpdGsvwyaslagnaiaridp~~~~  221 (353)
T COG4257         159 GNLWFTGQIGAYGRLDPARNVISVFPAPQGG------GP-----------YGICATPDGSVWYASLAGNAIARIDPFAGH  221 (353)
T ss_pred             ccEEEeeccccceecCcccCceeeeccCCCC------CC-----------cceEECCCCcEEEEeccccceEEcccccCC
Confidence            2232222211          14444322110      00           111333489998876555689999999987


Q ss_pred             EEEeecCCCCCCCCceE-EEECCeEEEEEEEeeCCccEEEEEEEecCCCCeEEEEeeChhhhhcccCcceEEEEEecCCE
Q 012227          336 WKQFIIPTPLHLNDHTL-AECGGRIMLVGLLTKNAATCVCIWELQKMTLLWKEVDRMPNIWCLDFYGKHVRMTCLGNKGL  414 (468)
Q Consensus       336 w~~i~~P~p~~~~~~~l-~~~~G~L~lv~~~~~~~~~~i~Vw~ld~~~~~W~~v~~mp~~~~~~~~~~~~~~~~~~~~~~  414 (468)
                      -..++.|.+.......+ +...|++.+..-      ..-.+.++|+....|.+- .||..--..      .-..+.+-|.
T Consensus       222 aev~p~P~~~~~gsRriwsdpig~~wittw------g~g~l~rfdPs~~sW~ey-pLPgs~arp------ys~rVD~~gr  288 (353)
T COG4257         222 AEVVPQPNALKAGSRRIWSDPIGRAWITTW------GTGSLHRFDPSVTSWIEY-PLPGSKARP------YSMRVDRHGR  288 (353)
T ss_pred             cceecCCCcccccccccccCccCcEEEecc------CCceeeEeCcccccceee-eCCCCCCCc------ceeeeccCCc
Confidence            77766665533333333 234577765421      122567778877778774 444321110      1234555678


Q ss_pred             EEEEeeeCCCCeEEEEECCCCcEEEccC
Q 012227          415 LMLSLRSRQMNRLVTYNVMSREWLKVPG  442 (468)
Q Consensus       415 I~~~~~~~~~~~l~~YD~~t~~w~~v~~  442 (468)
                      |++.  ....+.|..||+++.+.+.++.
T Consensus       289 VW~s--ea~agai~rfdpeta~ftv~p~  314 (353)
T COG4257         289 VWLS--EADAGAIGRFDPETARFTVLPI  314 (353)
T ss_pred             EEee--ccccCceeecCcccceEEEecC
Confidence            8763  2345789999999999998865

>PRK11138 outer membrane biogenesis protein BamB; Provisional

Probab=91.15  E-value=18  Score=36.33  Aligned_cols=182  Identities=18%  Similarity=0.213  Sum_probs=98.5

Q ss_pred             ecCceEEEEEcCCceEEEEcCCCCc--eEe-cCCCCcCCcceeEEEEEEcCCCCCCCeEEEEEEecCcEEEEeCCCCC--
Q 012227          212 SAGGLVCFLDIGHRNFYVCNPLTQS--FKE-LPARSVKVWSRVAVGMTLNGNSTSSGYKILWVGCDGEYEIYDSLRNS--  286 (468)
Q Consensus       212 s~~GLl~~~~~~~~~~~V~NP~T~~--~~~-LP~~~~~~~~~~~~~~~~d~~~~~~~ykVv~v~~~~~v~vy~s~t~~--  286 (468)
                      ..+|.|++... ...++.+|+.|++  |+. ++.. .  ..   .-...+       -+|++...++.+..+|..+++  
T Consensus       118 v~~~~v~v~~~-~g~l~ald~~tG~~~W~~~~~~~-~--~s---sP~v~~-------~~v~v~~~~g~l~ald~~tG~~~  183 (394)
T PRK11138        118 VAGGKVYIGSE-KGQVYALNAEDGEVAWQTKVAGE-A--LS---RPVVSD-------GLVLVHTSNGMLQALNESDGAVK  183 (394)
T ss_pred             EECCEEEEEcC-CCEEEEEECCCCCCcccccCCCc-e--ec---CCEEEC-------CEEEEECCCCEEEEEEccCCCEe
Confidence            34677766543 3478999999987  432 2221 0  00   001112       356654455568888987665  


Q ss_pred             ccCCCCCCCCcccCcccccccceEEECCEEEEEEcCCCeEEEEECCCC--eEEEeecCCCCCC--------CCceEEEEC
Q 012227          287 WTRPGSMPSNIKLPVSLNFRSQAVSVDGILYFMRSDPEGIVSYNMVTG--VWKQFIIPTPLHL--------NDHTLAECG  356 (468)
Q Consensus       287 W~~~~~~p~~~~~~~~~~~~~~~v~~~G~lY~~~~~~~~i~~fD~~~~--~w~~i~~P~p~~~--------~~~~l~~~~  356 (468)
                      |+.-...+.     ........++..+|.+|+... ...+.++|..++  .|+.- ...+...        ....-+..+
T Consensus       184 W~~~~~~~~-----~~~~~~~sP~v~~~~v~~~~~-~g~v~a~d~~~G~~~W~~~-~~~~~~~~~~~~~~~~~~sP~v~~  256 (394)
T PRK11138        184 WTVNLDVPS-----LTLRGESAPATAFGGAIVGGD-NGRVSAVLMEQGQLIWQQR-ISQPTGATEIDRLVDVDTTPVVVG  256 (394)
T ss_pred             eeecCCCCc-----ccccCCCCCEEECCEEEEEcC-CCEEEEEEccCChhhheec-cccCCCccchhcccccCCCcEEEC
Confidence            875432211     001112345667888887654 457899999876  46531 2111110        112334568


Q ss_pred             CeEEEEEEEeeCCccEEEEEEEecCC--CCeEEEEeeChhhhhcccCcceEEEEEecCCEEEEEeeeCCCCeEEEEECCC
Q 012227          357 GRIMLVGLLTKNAATCVCIWELQKMT--LLWKEVDRMPNIWCLDFYGKHVRMTCLGNKGLLMLSLRSRQMNRLVTYNVMS  434 (468)
Q Consensus       357 G~L~lv~~~~~~~~~~i~Vw~ld~~~--~~W~~v~~mp~~~~~~~~~~~~~~~~~~~~~~I~~~~~~~~~~~l~~YD~~t  434 (468)
                      |.||+.... .      .++.+|..+  ..|+.-  .+.     .      ...+..++.||+..   ..+.++++|.++
T Consensus       257 ~~vy~~~~~-g------~l~ald~~tG~~~W~~~--~~~-----~------~~~~~~~~~vy~~~---~~g~l~ald~~t  313 (394)
T PRK11138        257 GVVYALAYN-G------NLVALDLRSGQIVWKRE--YGS-----V------NDFAVDGGRIYLVD---QNDRVYALDTRG  313 (394)
T ss_pred             CEEEEEEcC-C------eEEEEECCCCCEEEeec--CCC-----c------cCcEEECCEEEEEc---CCCeEEEEECCC
Confidence            888876531 1      456666543  467652  110     0      01123478888743   346899999998


Q ss_pred             CcE
Q 012227          435 REW  437 (468)
Q Consensus       435 ~~w  437 (468)
                      ++-
T Consensus       314 G~~  316 (394)
T PRK11138        314 GVE  316 (394)
T ss_pred             CcE
Confidence            853

>PF08450 SGL: SMP-30/Gluconolaconase/LRE-like region; InterPro: IPR013658 This family describes a region that is found in proteins expressed by a variety of eukaryotic and prokaryotic species

Probab=90.60  E-value=7.2  Score=36.21  Aligned_cols=111  Identities=16%  Similarity=0.145  Sum_probs=67.0

Q ss_pred             CCEEEEEEcCCCeEEEEECCCCeEEEeecCCCCCCCCceEEEE--CCeEEEEEEEeeCCccEEEEEEEecCCCCeEEEEe
Q 012227          313 DGILYFMRSDPEGIVSYNMVTGVWKQFIIPTPLHLNDHTLAEC--GGRIMLVGLLTKNAATCVCIWELQKMTLLWKEVDR  390 (468)
Q Consensus       313 ~G~lY~~~~~~~~i~~fD~~~~~w~~i~~P~p~~~~~~~l~~~--~G~L~lv~~~~~~~~~~i~Vw~ld~~~~~W~~v~~  390 (468)
                      +|.|||.......|..+|+.+++...+..|.+     ..++..  +|+|++...      ..+.  .+|..+++++.+..
T Consensus        11 ~g~l~~~D~~~~~i~~~~~~~~~~~~~~~~~~-----~G~~~~~~~g~l~v~~~------~~~~--~~d~~~g~~~~~~~   77 (246)
T PF08450_consen   11 DGRLYWVDIPGGRIYRVDPDTGEVEVIDLPGP-----NGMAFDRPDGRLYVADS------GGIA--VVDPDTGKVTVLAD   77 (246)
T ss_dssp             TTEEEEEETTTTEEEEEETTTTEEEEEESSSE-----EEEEEECTTSEEEEEET------TCEE--EEETTTTEEEEEEE
T ss_pred             CCEEEEEEcCCCEEEEEECCCCeEEEEecCCC-----ceEEEEccCCEEEEEEc------CceE--EEecCCCcEEEEee
Confidence            69999999877899999999999887766552     223333  678776542      2223  33767788888877


Q ss_pred             eChhhhhcccCcceEEEEEecCCEEEEEeeeCC----C--CeEEEEECCCCcEEEc
Q 012227          391 MPNIWCLDFYGKHVRMTCLGNKGLLMLSLRSRQ----M--NRLVTYNVMSREWLKV  440 (468)
Q Consensus       391 mp~~~~~~~~~~~~~~~~~~~~~~I~~~~~~~~----~--~~l~~YD~~t~~w~~v  440 (468)
                      .+..... +.  ...-.++..+|.+|+......    .  +.++.++.+ ++.+.+
T Consensus        78 ~~~~~~~-~~--~~ND~~vd~~G~ly~t~~~~~~~~~~~~g~v~~~~~~-~~~~~~  129 (246)
T PF08450_consen   78 LPDGGVP-FN--RPNDVAVDPDGNLYVTDSGGGGASGIDPGSVYRIDPD-GKVTVV  129 (246)
T ss_dssp             EETTCSC-TE--EEEEEEE-TTS-EEEEEECCBCTTCGGSEEEEEEETT-SEEEEE
T ss_pred             ccCCCcc-cC--CCceEEEcCCCCEEEEecCCCccccccccceEEECCC-CeEEEE
Confidence            7321100 00  011234445677887433221    1  568999998 666655

These proteins include various enzymes, such as senescence marker protein 30 (SMP-30, Q15493 from SWISSPROT), gluconolactonase (Q01578 from SWISSPROT) and luciferin-regenerating enzyme (LRE, Q86DU5 from SWISSPROT). SMP-30 is known to hydrolyse diisopropyl phosphorofluoridate in the liver, and has been noted as having sequence similarity, in the region described in this family, with PON1 (P52430 from SWISSPROT) and LRE. ; PDB: 2GHS_A 2DG0_L 2DG1_D 2DSO_D 3E5Z_A 2IAT_A 2IAV_A 2GVV_A 3HLI_A 2GVU_A ....

>PF07250 Glyoxal_oxid_N: Glyoxal oxidase N-terminus; InterPro: IPR009880 This entry represents the N terminus (approximately 300 residues) of a number of plant and fungal glyoxal oxidase enzymes

Probab=89.66  E-value=2.8  Score=39.05  Aligned_cols=145  Identities=14%  Similarity=0.154  Sum_probs=76.9

Q ss_pred             eEEEEcCCCCceEecCCCCcCCcceeEEEEEEcCCCCCCCeEEEEEEecC----cEEEEeCCC----CCccCCCC-CCCC
Q 012227          226 NFYVCNPLTQSFKELPARSVKVWSRVAVGMTLNGNSTSSGYKILWVGCDG----EYEIYDSLR----NSWTRPGS-MPSN  296 (468)
Q Consensus       226 ~~~V~NP~T~~~~~LP~~~~~~~~~~~~~~~~d~~~~~~~ykVv~v~~~~----~v~vy~s~t----~~W~~~~~-~p~~  296 (468)
                      .-.+|||.|++++.+... ..  ..++-+      ..-.+.+++.+|++.    .+.+|++.+    ..|.+... |...
T Consensus        47 ~s~~yD~~tn~~rpl~v~-td--~FCSgg------~~L~dG~ll~tGG~~~G~~~ir~~~p~~~~~~~~w~e~~~~m~~~  117 (243)
T PF07250_consen   47 HSVEYDPNTNTFRPLTVQ-TD--TFCSGG------AFLPDGRLLQTGGDNDGNKAIRIFTPCTSDGTCDWTESPNDMQSG  117 (243)
T ss_pred             EEEEEecCCCcEEeccCC-CC--CcccCc------CCCCCCCEEEeCCCCccccceEEEecCCCCCCCCceECcccccCC
Confidence            357899999999988753 11  112111      112235777777753    388888764    67876643 3322


Q ss_pred             cccCcccccccceE-EECCEEEEEEcCCCeEEEEECC-CCeEEEeecCCCC-------CCCCceEEE-ECCeEEEEEEEe
Q 012227          297 IKLPVSLNFRSQAV-SVDGILYFMRSDPEGIVSYNMV-TGVWKQFIIPTPL-------HLNDHTLAE-CGGRIMLVGLLT  366 (468)
Q Consensus       297 ~~~~~~~~~~~~~v-~~~G~lY~~~~~~~~i~~fD~~-~~~w~~i~~P~p~-------~~~~~~l~~-~~G~L~lv~~~~  366 (468)
                             +++...+ .-||.+.++++.......|-+. ......+.++...       ....+.+-. -+|+|++.+...
T Consensus       118 -------RWYpT~~~L~DG~vlIvGG~~~~t~E~~P~~~~~~~~~~~~~l~~~~~~~~~nlYP~~~llPdG~lFi~an~~  190 (243)
T PF07250_consen  118 -------RWYPTATTLPDGRVLIVGGSNNPTYEFWPPKGPGPGPVTLPFLSQTSDTLPNNLYPFVHLLPDGNLFIFANRG  190 (243)
T ss_pred             -------CccccceECCCCCEEEEeCcCCCcccccCCccCCCCceeeecchhhhccCccccCceEEEcCCCCEEEEEcCC
Confidence                   3444343 3489999998754333333333 1111111122111       111233333 499999877432


Q ss_pred             eCCccEEEEEEEecCCCCe-EEEEeeChh
Q 012227          367 KNAATCVCIWELQKMTLLW-KEVDRMPNI  394 (468)
Q Consensus       367 ~~~~~~i~Vw~ld~~~~~W-~~v~~mp~~  394 (468)
                      .      .||  |..++++ ..+..||..
T Consensus       191 s------~i~--d~~~n~v~~~lP~lPg~  211 (243)
T PF07250_consen  191 S------IIY--DYKTNTVVRTLPDLPGG  211 (243)
T ss_pred             c------EEE--eCCCCeEEeeCCCCCCC
Confidence            1      344  6655655 455566643

Glyoxal oxidase catalyses the oxidation of aldehydes to carboxylic acids, coupled with reduction of dioxygen to hydrogen peroxide. It is an essential component of the extracellular lignin degradation pathways of the wood-rot fungus Phanerochaete chrysosporium [].

>PLN02772 guanylate kinase

Probab=89.59  E-value=2.3  Score=42.33  Aligned_cols=73  Identities=18%  Similarity=0.284  Sum_probs=50.8

Q ss_pred             ccceEEECCEEEEEEcCC------CeEEEEECCCCeEEEeec--CCCCCCCCceEEEE-CCeEEEEEEEeeCCccEEEEE
Q 012227          306 RSQAVSVDGILYFMRSDP------EGIVSYNMVTGVWKQFII--PTPLHLNDHTLAEC-GGRIMLVGLLTKNAATCVCIW  376 (468)
Q Consensus       306 ~~~~v~~~G~lY~~~~~~------~~i~~fD~~~~~w~~i~~--P~p~~~~~~~l~~~-~G~L~lv~~~~~~~~~~i~Vw  376 (468)
                      ...++.+++++|++++..      ..+.+||..+.+|.....  +.|..+.++..+.+ +++|+++.....   ..-++|
T Consensus        27 ~~tav~igdk~yv~GG~~d~~~~~~~v~i~D~~t~~W~~P~V~G~~P~~r~GhSa~v~~~~rilv~~~~~~---~~~~~w  103 (398)
T PLN02772         27 RETSVTIGDKTYVIGGNHEGNTLSIGVQILDKITNNWVSPIVLGTGPKPCKGYSAVVLNKDRILVIKKGSA---PDDSIW  103 (398)
T ss_pred             cceeEEECCEEEEEcccCCCccccceEEEEECCCCcEecccccCCCCCCCCcceEEEECCceEEEEeCCCC---CccceE
Confidence            456788999999998621      258899999999987432  23444555666666 789998875332   224788


Q ss_pred             EEecC
Q 012227          377 ELQKM  381 (468)
Q Consensus       377 ~ld~~  381 (468)
                      -|+-.
T Consensus       104 ~l~~~  108 (398)
T PLN02772        104 FLEVD  108 (398)
T ss_pred             EEEcC
Confidence            88754

>PF07893 DUF1668: Protein of unknown function (DUF1668); InterPro: IPR012871 The hypothetical proteins found in this family are expressed by Oryza sativa (Rice) and are of unknown function

Probab=89.50  E-value=23  Score=34.94  Aligned_cols=166  Identities=20%  Similarity=0.297  Sum_probs=81.1

Q ss_pred             CcceecCCCCcccCCCCCCCCC-CcEEEEeeecCceEEEEEcCC-----c-----eE--EEEcCC--------CCceEec
Q 012227          182 SGAMYDPSLKKWHHPTISSLPT-KMIILPVASAGGLVCFLDIGH-----R-----NF--YVCNPL--------TQSFKEL  240 (468)
Q Consensus       182 ~~~~~dp~~~~w~~~~l~~~p~-~~~~~~~~s~~GLl~~~~~~~-----~-----~~--~V~NP~--------T~~~~~L  240 (468)
                      ....||..+....  ..|.+.. +..-+.++. +|-|++.+...     .     .+  +++++.        +=.|..|
T Consensus        87 ~t~vyDt~t~av~--~~P~l~~pk~~pisv~V-G~~LY~m~~~~~~~~~~~~~~~~FE~l~~~~~~~~~~~~~~w~W~~L  163 (342)
T PF07893_consen   87 RTLVYDTDTRAVA--TGPRLHSPKRCPISVSV-GDKLYAMDRSPFPEPAGRPDFPCFEALVYRPPPDDPSPEESWSWRSL  163 (342)
T ss_pred             CeEEEECCCCeEe--ccCCCCCCCcceEEEEe-CCeEEEeeccCccccccCccceeEEEeccccccccccCCCcceEEcC
Confidence            3568998877554  3444332 111221333 44465554321     0     33  344532        2258889


Q ss_pred             CCCCcCCcc------eeEEEEEEcCCCCCCCeEEEE-EEec-CcEEEEeCCCCCccCCCCCCCCcccCcccccccceEEE
Q 012227          241 PARSVKVWS------RVAVGMTLNGNSTSSGYKILW-VGCD-GEYEIYDSLRNSWTRPGSMPSNIKLPVSLNFRSQAVSV  312 (468)
Q Consensus       241 P~~~~~~~~------~~~~~~~~d~~~~~~~ykVv~-v~~~-~~v~vy~s~t~~W~~~~~~p~~~~~~~~~~~~~~~v~~  312 (468)
                      |++++....      ....++. |+      -.|++ +.+. .+...||..+.+|+..+.-    .+|+    ...+.++
T Consensus       164 P~PPf~~~~~~~~~~i~sYavv-~g------~~I~vS~~~~~~GTysfDt~~~~W~~~GdW----~LPF----~G~a~y~  228 (342)
T PF07893_consen  164 PPPPFVRDRRYSDYRITSYAVV-DG------RTIFVSVNGRRWGTYSFDTESHEWRKHGDW----MLPF----HGQAEYV  228 (342)
T ss_pred             CCCCccccCCcccceEEEEEEe-cC------CeEEEEecCCceEEEEEEcCCcceeeccce----ecCc----CCccEEC
Confidence            988654432      2233333 32      23332 2211 2478899999999988641    1222    3344444


Q ss_pred             CCEEEEEEc--CC--CeEEEEECCCC-----------eEEEeecCCCCCCCCceEEEE-CCeEEEEEEE
Q 012227          313 DGILYFMRS--DP--EGIVSYNMVTG-----------VWKQFIIPTPLHLNDHTLAEC-GGRIMLVGLL  365 (468)
Q Consensus       313 ~G~lY~~~~--~~--~~i~~fD~~~~-----------~w~~i~~P~p~~~~~~~l~~~-~G~L~lv~~~  365 (468)
                      ...=-|++-  ..  ..+-+.|+...           .|..+..|.........|+.+ +|+.|++...
T Consensus       229 ~el~~W~Gls~~~~~~~lca~dv~~~~~~~~pp~~~~~~~~l~~~~~~~~~~~~Lv~lG~grFCi~~~~  297 (342)
T PF07893_consen  229 PELDLWFGLSSDGGGGHLCACDVSSADSASPPPEWKLTWEELFPPEEWRHVGATLVYLGSGRFCIVEFF  297 (342)
T ss_pred             CCcCeEEEeccCCCCcEEEEEeccccccCCCCCcceeccccccccccccccCceEEECCCCCEEEEEEe
Confidence            333344442  22  36778887652           233332232222334566655 5677766543

>PTZ00420 coronin; Provisional

Probab=88.64  E-value=36  Score=36.07  Aligned_cols=156  Identities=13%  Similarity=0.056  Sum_probs=75.4

Q ss_pred             eEEEEEEecCcEEEEeCCCCCccCCCCCCCCcccCcccccccceEE--ECCEEEEEEcCCCeEEEEECCCCeEEEeecCC
Q 012227          266 YKILWVGCDGEYEIYDSLRNSWTRPGSMPSNIKLPVSLNFRSQAVS--VDGILYFMRSDPEGIVSYNMVTGVWKQFIIPT  343 (468)
Q Consensus       266 ykVv~v~~~~~v~vy~s~t~~W~~~~~~p~~~~~~~~~~~~~~~v~--~~G~lY~~~~~~~~i~~fD~~~~~w~~i~~P~  343 (468)
                      +.++..+.++.+.+||..++.  .+..+...    .    .-.++.  -+|.+...+.....|..||+.+++-.. .+..
T Consensus       139 ~iLaSgS~DgtIrIWDl~tg~--~~~~i~~~----~----~V~SlswspdG~lLat~s~D~~IrIwD~Rsg~~i~-tl~g  207 (568)
T PTZ00420        139 YIMCSSGFDSFVNIWDIENEK--RAFQINMP----K----KLSSLKWNIKGNLLSGTCVGKHMHIIDPRKQEIAS-SFHI  207 (568)
T ss_pred             eEEEEEeCCCeEEEEECCCCc--EEEEEecC----C----cEEEEEECCCCCEEEEEecCCEEEEEECCCCcEEE-EEec
Confidence            333444556779999988654  11000000    0    011222  367766666555679999998875432 1222


Q ss_pred             CCCCCCceEE---E--ECCeEEEEEEEeeCCccEEEEEEEecCCCCeEEEEeeChhhhhcccCcceEEE-EE-ecCCEEE
Q 012227          344 PLHLNDHTLA---E--CGGRIMLVGLLTKNAATCVCIWELQKMTLLWKEVDRMPNIWCLDFYGKHVRMT-CL-GNKGLLM  416 (468)
Q Consensus       344 p~~~~~~~l~---~--~~G~L~lv~~~~~~~~~~i~Vw~ld~~~~~W~~v~~mp~~~~~~~~~~~~~~~-~~-~~~~~I~  416 (468)
                      .........+   .  .++...+.++..+.....+.||.+.... .-.....+...     .+   .+. .. ...+.+|
T Consensus       208 H~g~~~s~~v~~~~fs~d~~~IlTtG~d~~~~R~VkLWDlr~~~-~pl~~~~ld~~-----~~---~L~p~~D~~tg~l~  278 (568)
T PTZ00420        208 HDGGKNTKNIWIDGLGGDDNYILSTGFSKNNMREMKLWDLKNTT-SALVTMSIDNA-----SA---PLIPHYDESTGLIY  278 (568)
T ss_pred             ccCCceeEEEEeeeEcCCCCEEEEEEcCCCCccEEEEEECCCCC-CceEEEEecCC-----cc---ceEEeeeCCCCCEE
Confidence            1111111111   1  2445545444433233579999766421 11111111110     00   111 11 2346776


Q ss_pred             EEeeeCCCCeEEEEECCCCcEEEccCC
Q 012227          417 LSLRSRQMNRLVTYNVMSREWLKVPGC  443 (468)
Q Consensus       417 ~~~~~~~~~~l~~YD~~t~~w~~v~~~  443 (468)
                      +..  ...+.+.+|++..+....+..+
T Consensus       279 lsG--kGD~tIr~~e~~~~~~~~l~~~  303 (568)
T PTZ00420        279 LIG--KGDGNCRYYQHSLGSIRKVNEY  303 (568)
T ss_pred             EEE--ECCCeEEEEEccCCcEEeeccc
Confidence            643  2357899999988877776544

>KOG2437 consensus Muskelin [Signal transduction mechanisms]

Probab=87.95  E-value=1.2  Score=44.91  Aligned_cols=150  Identities=15%  Similarity=0.160  Sum_probs=84.0

Q ss_pred             EcCCCCceEecCCCCcC-------CcceeEEEEEEcCCCCCCCeEEEEEEecCc------EEEEeCCCCCccCCCCCCCC
Q 012227          230 CNPLTQSFKELPARSVK-------VWSRVAVGMTLNGNSTSSGYKILWVGCDGE------YEIYDSLRNSWTRPGSMPSN  296 (468)
Q Consensus       230 ~NP~T~~~~~LP~~~~~-------~~~~~~~~~~~d~~~~~~~ykVv~v~~~~~------v~vy~s~t~~W~~~~~~p~~  296 (468)
                      --|.+-.|..+|+...+       ...+...-|+++  .  ++--|+.-|+-++      .+.|+-+.+.|..+..-.. 
T Consensus       234 q~ey~~~W~~i~~~~~~~~~~~~~p~~RgGHQMV~~--~--~~~CiYLYGGWdG~~~l~DFW~Y~v~e~~W~~iN~~t~-  308 (723)
T KOG2437|consen  234 QQEYKPRWSQIIPKSTKGDGEDNRPGMRGGHQMVID--V--QTECVYLYGGWDGTQDLADFWAYSVKENQWTCINRDTE-  308 (723)
T ss_pred             cccccccccccCchhhcccccccCccccCcceEEEe--C--CCcEEEEecCcccchhHHHHHhhcCCcceeEEeecCCC-
Confidence            45677788888875321       111222335544  1  2234555565432      7889999999987743111 


Q ss_pred             cccCcccccccceEEE--CCEEEEEEcC-----------CCeEEEEECCCCeEEEeecCCC-----CCCCCceEEEECCe
Q 012227          297 IKLPVSLNFRSQAVSV--DGILYFMRSD-----------PEGIVSYNMVTGVWKQFIIPTP-----LHLNDHTLAECGGR  358 (468)
Q Consensus       297 ~~~~~~~~~~~~~v~~--~G~lY~~~~~-----------~~~i~~fD~~~~~w~~i~~P~p-----~~~~~~~l~~~~G~  358 (468)
                        .|. .+..+..|.-  ..++|.++..           ..-+..||..++.|..+.....     .....+.+++.+.+
T Consensus       309 --~PG-~RsCHRMVid~S~~KLYLlG~Y~~sS~r~~~s~RsDfW~FDi~~~~W~~ls~dt~~dGGP~~vfDHqM~Vd~~k  385 (723)
T KOG2437|consen  309 --GPG-ARSCHRMVIDISRRKLYLLGRYLDSSVRNSKSLRSDFWRFDIDTNTWMLLSEDTAADGGPKLVFDHQMCVDSEK  385 (723)
T ss_pred             --CCc-chhhhhhhhhhhHhHHhhhhhccccccccccccccceEEEecCCceeEEecccccccCCcceeecceeeEecCc
Confidence              111 1223344433  3478887641           1348899999999998744322     22234666666555


Q ss_pred             --EEEEEEEee--CCccEEEEEEEecCCCCeEE
Q 012227          359 --IMLVGLLTK--NAATCVCIWELQKMTLLWKE  387 (468)
Q Consensus       359 --L~lv~~~~~--~~~~~i~Vw~ld~~~~~W~~  387 (468)
                        ||+.++..-  +....-.+|.++.....|+.
T Consensus       386 ~~iyVfGGr~~~~~e~~f~GLYaf~~~~~~w~~  418 (723)
T KOG2437|consen  386 HMIYVFGGRILTCNEPQFSGLYAFNCQCQTWKL  418 (723)
T ss_pred             ceEEEecCeeccCCCccccceEEEecCCccHHH
Confidence              888887543  11223356667766667765

>TIGR03300 assembly_YfgL outer membrane assembly lipoprotein YfgL

Probab=87.79  E-value=31  Score=34.29  Aligned_cols=101  Identities=21%  Similarity=0.275  Sum_probs=57.5

Q ss_pred             cCceEEEEEcCCceEEEEcCCCCceE---ecCCCCcCCcceeEEEEEEcCCCCCCCeEEEEEEecCcEEEEeCCCC--Cc
Q 012227          213 AGGLVCFLDIGHRNFYVCNPLTQSFK---ELPARSVKVWSRVAVGMTLNGNSTSSGYKILWVGCDGEYEIYDSLRN--SW  287 (468)
Q Consensus       213 ~~GLl~~~~~~~~~~~V~NP~T~~~~---~LP~~~~~~~~~~~~~~~~d~~~~~~~ykVv~v~~~~~v~vy~s~t~--~W  287 (468)
                      .+|.|++.... ..++.+|+.|++-.   .++.. ..      .+...+      +-+|++...++.+..+|..++  .|
T Consensus        64 ~~~~v~v~~~~-g~v~a~d~~tG~~~W~~~~~~~-~~------~~p~v~------~~~v~v~~~~g~l~ald~~tG~~~W  129 (377)
T TIGR03300        64 AGGKVYAADAD-GTVVALDAETGKRLWRVDLDER-LS------GGVGAD------GGLVFVGTEKGEVIALDAEDGKELW  129 (377)
T ss_pred             ECCEEEEECCC-CeEEEEEccCCcEeeeecCCCC-cc------cceEEc------CCEEEEEcCCCEEEEEECCCCcEee
Confidence            36666665533 46888999988743   23331 10      111112      235665445566888887654  48


Q ss_pred             cCCCCCCCCcccCcccccccceEEECCEEEEEEcCCCeEEEEECCCC--eEEE
Q 012227          288 TRPGSMPSNIKLPVSLNFRSQAVSVDGILYFMRSDPEGIVSYNMVTG--VWKQ  338 (468)
Q Consensus       288 ~~~~~~p~~~~~~~~~~~~~~~v~~~G~lY~~~~~~~~i~~fD~~~~--~w~~  338 (468)
                      +.-..  ..        ....++..++.+|+... ...+.++|..++  .|+.
T Consensus       130 ~~~~~--~~--------~~~~p~v~~~~v~v~~~-~g~l~a~d~~tG~~~W~~  171 (377)
T TIGR03300       130 RAKLS--SE--------VLSPPLVANGLVVVRTN-DGRLTALDAATGERLWTY  171 (377)
T ss_pred             eeccC--ce--------eecCCEEECCEEEEECC-CCeEEEEEcCCCceeeEE
Confidence            64321  11        12345557888887653 457999999865  4654

Members of this protein family are YfgL, a lipoprotein component of a complex that acts protein insertion into the bacterial outer membrane. Other members of this complex are NlpB, YfiO, and YaeT. This protein contains multiple copies of a repeat that, in other contexts, are associated with binding of the coenzyme PQQ.

>PF02897 Peptidase_S9_N: Prolyl oligopeptidase, N-terminal beta-propeller domain; InterPro: IPR004106 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families

Probab=86.82  E-value=37  Score=34.22  Aligned_cols=120  Identities=13%  Similarity=0.112  Sum_probs=64.6

Q ss_pred             EECCEEEEEEcC---CCeEEEEECCCCe---EEEeecCCCCCCCCceEEEECCeEEEEEEEeeCCccEEEEEEEecCCCC
Q 012227          311 SVDGILYFMRSD---PEGIVSYNMVTGV---WKQFIIPTPLHLNDHTLAECGGRIMLVGLLTKNAATCVCIWELQKMTLL  384 (468)
Q Consensus       311 ~~~G~lY~~~~~---~~~i~~fD~~~~~---w~~i~~P~p~~~~~~~l~~~~G~L~lv~~~~~~~~~~i~Vw~ld~~~~~  384 (468)
                      ..++.+|+++..   ...|+.+|+.+..   |..+-+|......-..+...++.|++....  +....+.|+  +.. ..
T Consensus       285 ~~~~~~yi~Tn~~a~~~~l~~~~l~~~~~~~~~~~l~~~~~~~~l~~~~~~~~~Lvl~~~~--~~~~~l~v~--~~~-~~  359 (414)
T PF02897_consen  285 HHGDRLYILTNDDAPNGRLVAVDLADPSPAEWWTVLIPEDEDVSLEDVSLFKDYLVLSYRE--NGSSRLRVY--DLD-DG  359 (414)
T ss_dssp             EETTEEEEEE-TT-TT-EEEEEETTSTSGGGEEEEEE--SSSEEEEEEEEETTEEEEEEEE--TTEEEEEEE--ETT--T
T ss_pred             ccCCEEEEeeCCCCCCcEEEEecccccccccceeEEcCCCCceeEEEEEEECCEEEEEEEE--CCccEEEEE--ECC-CC
Confidence            458899988752   3579999998764   664424433222223445568888765542  334455555  442 24


Q ss_pred             eEEE-EeeChhhhhcccCcceEEEEEecCCEEEEEeeeC-CCCeEEEEECCCCcEEEcc
Q 012227          385 WKEV-DRMPNIWCLDFYGKHVRMTCLGNKGLLMLSLRSR-QMNRLVTYNVMSREWLKVP  441 (468)
Q Consensus       385 W~~v-~~mp~~~~~~~~~~~~~~~~~~~~~~I~~~~~~~-~~~~l~~YD~~t~~w~~v~  441 (468)
                      |... ..+|....  .    .....-..++.++|...+. ....++.||+.+++.+.+.
T Consensus       360 ~~~~~~~~p~~g~--v----~~~~~~~~~~~~~~~~ss~~~P~~~y~~d~~t~~~~~~k  412 (414)
T PF02897_consen  360 KESREIPLPEAGS--V----SGVSGDFDSDELRFSYSSFTTPPTVYRYDLATGELTLLK  412 (414)
T ss_dssp             EEEEEEESSSSSE--E----EEEES-TT-SEEEEEEEETTEEEEEEEEETTTTCEEEEE
T ss_pred             cEEeeecCCcceE--E----eccCCCCCCCEEEEEEeCCCCCCEEEEEECCCCCEEEEE
Confidence            4443 23332110  0    0111112467787765544 4568999999999988763

Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Proteolytic enzymes that exploit serine in their catalytic activity are ubiquitous, being found in viruses, bacteria and eukaryotes []. They include a wide range of peptidase activity, including exopeptidase, endopeptidase, oligopeptidase and omega-peptidase activity. Over 20 families (denoted S1 - S66) of serine protease have been identified, these being grouped into clans on the basis of structural similarity and other functional evidence []. Structures are known for members of the clans and the structures indicate that some appear to be totally unrelated, suggesting different evolutionary origins for the serine peptidases []. Not withstanding their different evolutionary origins, there are similarities in the reaction mechanisms of several peptidases. Chymotrypsin, subtilisin and carboxypeptidase C have a catalytic triad of serine, aspartate and histidine in common: serine acts as a nucleophile, aspartate as an electrophile, and histidine as a base []. The geometric orientations of the catalytic residues are similar between families, despite different protein folds []. The linear arrangements of the catalytic residues commonly reflect clan relationships. For example the catalytic triad in the chymotrypsin clan (PA) is ordered HDS, but is ordered DHS in the subtilisin clan (SB) and SDH in the carboxypeptidase clan (SC) [, ]. This entry represents the beta-propeller domain found at the N-terminal of prolyl oligopeptidase, including acylamino-acid-releasing enzyme (also known as acylaminoacyl peptidase), which belong to the MEROPS peptidase family S9 (clan SC), subfamily S9A. The prolyl oligopeptidase family consist of a number of evolutionary related peptidases whose catalytic activity seems to be provided by a charge relay system similar to that of the trypsin family of serine proteases, but which evolved by independent convergent evolution. The N-terminal domain of prolyl oligopeptidases form an unusual 7-bladed beta-propeller consisting of seven 4-stranded beta-sheet motifs. Prolyl oligopeptidase is a large cytosolic enzyme involved in the maturation and degradation of peptide hormones and neuropeptides, which relate to the induction of amnesia. The enzyme contains a peptidase domain, where its catalytic triad (Ser554, His680, Asp641) is covered by the central tunnel of the N-terminal beta-propeller domain. In this way, large structured peptides are excluded from the active site, thereby protecting larger peptides and proteins from proteolysis in the cytosol []. The protein fold of the peptidase domain for members of this family resembles that of serine carboxypeptidase D, the type example of clan SC. Mammalian acylaminoacyl peptidase is an exopeptidase that is a member of the same prolyl oligopeptidase family of serine peptidases. This enzyme removes acylated amino acid residues from the N terminus of oligopeptides [].; GO: 0004252 serine-type endopeptidase activity, 0006508 proteolysis; PDB: 2BKL_B 3DDU_A 1YR2_A 2XE4_A 1VZ3_A 3EQ9_A 1O6F_A 3EQ7_A 4AN0_A 1UOP_A ....

>PF07762 DUF1618: Protein of unknown function (DUF1618); InterPro: IPR011676 The proteins of this entry are mainly hypothetical proteins expressed by Oryza sativa

Probab=86.49  E-value=8  Score=32.13  Aligned_cols=69  Identities=20%  Similarity=0.350  Sum_probs=49.5

Q ss_pred             eEEEEECCCC--eEEEeecCCCCCC------------CCceEEEECCeEEEEEEEeeC------CccEEEEEEEec---C
Q 012227          325 GIVSYNMVTG--VWKQFIIPTPLHL------------NDHTLAECGGRIMLVGLLTKN------AATCVCIWELQK---M  381 (468)
Q Consensus       325 ~i~~fD~~~~--~w~~i~~P~p~~~------------~~~~l~~~~G~L~lv~~~~~~------~~~~i~Vw~ld~---~  381 (468)
                      +|+.+|+..+  ..+.|++|.+...            ....++..+|+|-+|......      ....+..|.|..   .
T Consensus         7 GIL~CD~~~~~p~l~~vpLP~~~~~~~~~~~~~~~~~~~R~v~v~~G~ikfV~i~~~~~~~~~~~~~~vt~Wtl~~~~~~   86 (131)
T PF07762_consen    7 GILFCDVFDDSPVLRFVPLPPPCPPNRRDDRPRGSPESYRDVGVSGGKIKFVEIDGYEDDGPPSGGWTVTTWTLKDPEGS   86 (131)
T ss_pred             CEEEEECCCCCccEEEEeCCCccccCcccccccCCchhCceEEecCCCEEEEEEecccCCCcccCCcEEEEEEeccCCCC
Confidence            5777887754  6677777765321            135677889999999876542      356899999998   4


Q ss_pred             CCCeEEEEeeCh
Q 012227          382 TLLWKEVDRMPN  393 (468)
Q Consensus       382 ~~~W~~v~~mp~  393 (468)
                      ..+|++-..+..
T Consensus        87 ~~~W~~d~~v~~   98 (131)
T PF07762_consen   87 SWEWKKDCEVDL   98 (131)
T ss_pred             CCCEEEeEEEEh
Confidence            689999876653

>COG3386 Gluconolactonase [Carbohydrate transport and metabolism]

Probab=84.63  E-value=21  Score=34.54  Aligned_cols=116  Identities=14%  Similarity=0.076  Sum_probs=59.8

Q ss_pred             CCEEEEEEcCCCeEEEEECCCCeEEEeecCCCCCCCCceEEEECCeEEEEEEEeeCCccEEEEEEEecCCCCeEEEEeeC
Q 012227          313 DGILYFMRSDPEGIVSYNMVTGVWKQFIIPTPLHLNDHTLAECGGRIMLVGLLTKNAATCVCIWELQKMTLLWKEVDRMP  392 (468)
Q Consensus       313 ~G~lY~~~~~~~~i~~fD~~~~~w~~i~~P~p~~~~~~~l~~~~G~L~lv~~~~~~~~~~i~Vw~ld~~~~~W~~v~~mp  392 (468)
                      .+.+||.......|..+|+.++.-+....|...  ....+..-+|.|....       ..+.++.. +....|+.+....
T Consensus        36 ~~~L~w~DI~~~~i~r~~~~~g~~~~~~~p~~~--~~~~~~d~~g~Lv~~~-------~g~~~~~~-~~~~~~t~~~~~~  105 (307)
T COG3386          36 RGALLWVDILGGRIHRLDPETGKKRVFPSPGGF--SSGALIDAGGRLIACE-------HGVRLLDP-DTGGKITLLAEPE  105 (307)
T ss_pred             CCEEEEEeCCCCeEEEecCCcCceEEEECCCCc--ccceeecCCCeEEEEc-------cccEEEec-cCCceeEEecccc
Confidence            357899887777899999998877766555432  3333344455554332       11222322 2233444444332


Q ss_pred             hhhhhcccCcceEEEEEecCCEEEEEeee---------CCCCeEEEEECCCCcEEEccC
Q 012227          393 NIWCLDFYGKHVRMTCLGNKGLLMLSLRS---------RQMNRLVTYNVMSREWLKVPG  442 (468)
Q Consensus       393 ~~~~~~~~~~~~~~~~~~~~~~I~~~~~~---------~~~~~l~~YD~~t~~w~~v~~  442 (468)
                      ...-....    --..+.-.|.+||....         ...+.++.||+....-+.+..
T Consensus       106 ~~~~~~r~----ND~~v~pdG~~wfgt~~~~~~~~~~~~~~G~lyr~~p~g~~~~l~~~  160 (307)
T COG3386         106 DGLPLNRP----NDGVVDPDGRIWFGDMGYFDLGKSEERPTGSLYRVDPDGGVVRLLDD  160 (307)
T ss_pred             CCCCcCCC----CceeEcCCCCEEEeCCCccccCccccCCcceEEEEcCCCCEEEeecC
Confidence            22111000    01233345667663333         234579999986555555554

>PF13854 Kelch_5: Kelch motif

Probab=84.38  E-value=2.1  Score=27.70  Aligned_cols=36  Identities=17%  Similarity=0.183  Sum_probs=26.7

Q ss_pred             CCCCCceEEEECCeEEEEEEEee-CCccEEEEEEEec
Q 012227          345 LHLNDHTLAECGGRIMLVGLLTK-NAATCVCIWELQK  380 (468)
Q Consensus       345 ~~~~~~~l~~~~G~L~lv~~~~~-~~~~~i~Vw~ld~  380 (468)
                      ..+..+..+..+++||+.++... .....-++|+|+.
T Consensus         3 ~~R~~hs~~~~~~~iyi~GG~~~~~~~~~~d~~~l~l   39 (42)
T PF13854_consen    3 SPRYGHSAVVVGNNIYIFGGYSGNNNSYSNDLYVLDL   39 (42)
T ss_pred             CCccceEEEEECCEEEEEcCccCCCCCEECcEEEEEC
Confidence            34566778889999999999873 3444558888875

>PF05096 Glu_cyclase_2: Glutamine cyclotransferase; InterPro: IPR007788 This family of enzymes 2

Probab=84.28  E-value=21  Score=33.53  Aligned_cols=104  Identities=15%  Similarity=0.109  Sum_probs=61.6

Q ss_pred             ECCEEEEEEcC--CCeEEEEECCCCeEEEeecCCCCCCCCceEEEECCeEEEEEEEeeCCccEEEEEEEecCCCCeEEEE
Q 012227          312 VDGILYFMRSD--PEGIVSYNMVTGVWKQFIIPTPLHLNDHTLAECGGRIMLVGLLTKNAATCVCIWELQKMTLLWKEVD  389 (468)
Q Consensus       312 ~~G~lY~~~~~--~~~i~~fD~~~~~w~~i~~P~p~~~~~~~l~~~~G~L~lv~~~~~~~~~~i~Vw~ld~~~~~W~~v~  389 (468)
                      -+|.+|--++.  ...|..+|+.+++.... .++|....+-.++..+++||.+.-.++      ..+++|.  ...+++.
T Consensus        54 ~~g~LyESTG~yG~S~l~~~d~~tg~~~~~-~~l~~~~FgEGit~~~d~l~qLTWk~~------~~f~yd~--~tl~~~~  124 (264)
T PF05096_consen   54 DDGTLYESTGLYGQSSLRKVDLETGKVLQS-VPLPPRYFGEGITILGDKLYQLTWKEG------TGFVYDP--NTLKKIG  124 (264)
T ss_dssp             ETTEEEEEECSTTEEEEEEEETTTSSEEEE-EE-TTT--EEEEEEETTEEEEEESSSS------EEEEEET--TTTEEEE
T ss_pred             CCCEEEEeCCCCCcEEEEEEECCCCcEEEE-EECCccccceeEEEECCEEEEEEecCC------eEEEEcc--ccceEEE
Confidence            46888887752  34688999999876542 445555566678888999998874332      4566676  3466665


Q ss_pred             eeChhhhhcccCcceEEEEEecCCEEEEEeeeCCCCeEEEEECCCC
Q 012227          390 RMPNIWCLDFYGKHVRMTCLGNKGLLMLSLRSRQMNRLVTYNVMSR  435 (468)
Q Consensus       390 ~mp~~~~~~~~~~~~~~~~~~~~~~I~~~~~~~~~~~l~~YD~~t~  435 (468)
                      +.+-.-        ..++...++..++++.+   ..++...|+++=
T Consensus       125 ~~~y~~--------EGWGLt~dg~~Li~SDG---S~~L~~~dP~~f  159 (264)
T PF05096_consen  125 TFPYPG--------EGWGLTSDGKRLIMSDG---SSRLYFLDPETF  159 (264)
T ss_dssp             EEE-SS--------S--EEEECSSCEEEE-S---SSEEEEE-TTT-
T ss_pred             EEecCC--------cceEEEcCCCEEEEECC---ccceEEECCccc
Confidence            553210        01333345666665433   468888888764

3.2.5 from EC catalyse the cyclization of free L-glutamine and N-terminal glutaminyl residues in proteins to pyroglutamate (5-oxoproline) and pyroglutamyl residues respectively []. This family includes plant and bacterial enzymes and seems unrelated to the mammalian enzymes.; PDB: 3NOK_B 2FAW_A 2IWA_A 3NOM_A 3NOL_A 3MBR_X.

>KOG2055 consensus WD40 repeat protein [General function prediction only]

Probab=83.57  E-value=18  Score=36.29  Aligned_cols=108  Identities=12%  Similarity=0.097  Sum_probs=58.1

Q ss_pred             ECCE-EEEEEcCCCeEEEEECCCCeEEEeecCCCCCC--CCceEEEECCeEEEEEEEeeCCccEEEEEEEecCCCCeEEE
Q 012227          312 VDGI-LYFMRSDPEGIVSYNMVTGVWKQFIIPTPLHL--NDHTLAECGGRIMLVGLLTKNAATCVCIWELQKMTLLWKEV  388 (468)
Q Consensus       312 ~~G~-lY~~~~~~~~i~~fD~~~~~w~~i~~P~p~~~--~~~~l~~~~G~L~lv~~~~~~~~~~i~Vw~ld~~~~~W~~v  388 (468)
                      -+|. .-+.++....+.+||+.+.+...+..|-....  ....-+.-++...++.+...      .|..|...+++|---
T Consensus       267 p~G~~~i~~s~rrky~ysyDle~ak~~k~~~~~g~e~~~~e~FeVShd~~fia~~G~~G------~I~lLhakT~eli~s  340 (514)
T KOG2055|consen  267 PNGHSVIFTSGRRKYLYSYDLETAKVTKLKPPYGVEEKSMERFEVSHDSNFIAIAGNNG------HIHLLHAKTKELITS  340 (514)
T ss_pred             CCCceEEEecccceEEEEeeccccccccccCCCCcccchhheeEecCCCCeEEEcccCc------eEEeehhhhhhhhhe
Confidence            3665 44444455789999999999988765543321  11222333555544444322      455556555666544


Q ss_pred             EeeChhhhhcccCcceEEEEEecCCEEEEEeeeCCCCeEEEEECCCCc
Q 012227          389 DRMPNIWCLDFYGKHVRMTCLGNKGLLMLSLRSRQMNRLVTYNVMSRE  436 (468)
Q Consensus       389 ~~mp~~~~~~~~~~~~~~~~~~~~~~I~~~~~~~~~~~l~~YD~~t~~  436 (468)
                      ..|+....        .+....++..|+++ .  ..+.|+++|+.++.
T Consensus       341 ~KieG~v~--------~~~fsSdsk~l~~~-~--~~GeV~v~nl~~~~  377 (514)
T KOG2055|consen  341 FKIEGVVS--------DFTFSSDSKELLAS-G--GTGEVYVWNLRQNS  377 (514)
T ss_pred             eeeccEEe--------eEEEecCCcEEEEE-c--CCceEEEEecCCcc
Confidence            34432211        12222344444443 2  24589999998884

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

No homologous structure with e-value below 0.005

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	468
2xn4_A	302	Kelch-like protein 2; structural protein, cytoskel	7e-07
2xn4_A	302	Kelch-like protein 2; structural protein, cytoskel	5e-04
3ii7_A	306	Kelch-like protein 7; protein-binding, kelch-repea	2e-06
4asc_A	315	Kelch repeat and BTB domain-containing protein 5;	2e-05
4asc_A	315	Kelch repeat and BTB domain-containing protein 5;	4e-04
2woz_A	318	Kelch repeat and BTB domain-containing protein 10;	2e-04

>2xn4_A Kelch-like protein 2; structural protein, cytoskeleton; 1.99A {Homo sapiens} Length = 302

 Score = 49.6 bits (119), Expect = 7e-07
 Identities = 37/207 (17%), Positives = 70/207 (33%), Gaps = 47/207 (22%)

Query: 180 VNSGAMYDPSLKKWHHPTISSLPTKMIILPVASAGGLVCFLDIGHRNFYVC-------NP 232
           V +   YDP   +W   +++++  +   L  A   GL+    +G  +           N 
Sbjct: 76  VRTVDSYDPVKDQWT--SVANMRDRRSTLGAAVLNGLL--YAVGGFDGSTGLSSVEAYNI 131

Query: 233 LTQSFKELPARSVKVWSRVAVGMTLNGNSTSSGYKILWV--GCDGEY-------EIYDSL 283
            +  +  +   + +  S V VG  + G         L+   G D          E Y++ 
Sbjct: 132 KSNEWFHVAPMNTRRSS-VGVG-VVGGL--------LYAVGGYDVASRQCLSTVECYNAT 181

Query: 284 RNSWTRPGSMPSNIKLPVSLNFRSQ--AVSVDGILYFM--RSDPEGIVS---YNMVTGVW 336
            N WT    M +          RS      ++ +LY +     P    S   Y+  T  W
Sbjct: 182 TNEWTYIAEMSTR---------RSGAGVGVLNNLLYAVGGHDGPLVRKSVEVYDPTTNAW 232

Query: 337 KQFIIPTPLHLNDHTLAECGGRIMLVG 363
            + +    +   +  +    G + +VG
Sbjct: 233 -RQVADMNMCRRNAGVCAVNGLLYVVG 258

>2xn4_A Kelch-like protein 2; structural protein, cytoskeleton; 1.99A {Homo sapiens} Length = 302

 Score = 41.1 bits (97), Expect = 5e-04
 Identities = 38/199 (19%), Positives = 65/199 (32%), Gaps = 40/199 (20%)

Query: 181 NSGAMYDPSLKKWHHPTISSLPTKMIILPVASAGGL---VCFLDIGHRNFY----VCNPL 233
           +S   Y+    +W    ++ + T+   + V   GGL   V   D+  R         N  
Sbjct: 124 SSVEAYNIKSNEWF--HVAPMNTRRSSVGVGVVGGLLYAVGGYDVASRQCLSTVECYNAT 181

Query: 234 TQSFKELPARSVKVWSRVAVGM-TLNGNSTSSGYKILWV--GCDGEY-----EIYDSLRN 285
           T  +  +   S +   R   G+  LN         +L+   G DG       E+YD   N
Sbjct: 182 TNEWTYIAEMSTR---RSGAGVGVLNN--------LLYAVGGHDGPLVRKSVEVYDPTTN 230

Query: 286 SWTRPGSMPSNIKLPVSLNFRSQAVSVDGILYFM--RSDPEGIVS---YNMVTGVWKQFI 340
           +W +   M             +   +V+G+LY +        + S   YN  T  W    
Sbjct: 231 AWRQVADMNM----CRR---NAGVCAVNGLLYVVGGDDGSCNLASVEYYNPTTDKWTVVS 283

Query: 341 IPTPLHLNDHTLAECGGRI 359
                  +   +     R+
Sbjct: 284 SCMSTGRSYAGVTVIDKRL 302

>3ii7_A Kelch-like protein 7; protein-binding, kelch-repeat, structural genomics, structur genomics consortium, SGC, kelch repeat, nucleus, protein BI; 1.63A {Homo sapiens} Length = 306

 Score = 48.9 bits (117), Expect = 2e-06
 Identities = 34/208 (16%), Positives = 69/208 (33%), Gaps = 46/208 (22%)

Query: 180 VNSGAMYDPSLKKWHHPTISSLPTKMIILPVASAGGLVCFL---DIGHRNFYVC---NPL 233
           +     Y+     W+  +    PT    L   +A G +      ++G+   Y+    +  
Sbjct: 69  IKRMDCYNVVKDSWY--SKLGPPTPRDSLAACAAEGKIYTSGGSEVGNSALYLFECYDTR 126

Query: 234 TQSFKELPARSVKVWSRVAVGMTLNGNSTSSGYKILWV--GCDGEY---------EIYDS 282
           T+S+   P+   +  S   +    NG        +++V  G  G           E+YD 
Sbjct: 127 TESWHTKPSMLTQRCS-HGMV-EANG--------LIYVCGGSLGNNVSGRVLNSCEVYDP 176

Query: 283 LRNSWTRPGSMPSNIKLPVSLNFRSQ--AVSVDGILYFM--RSDPEGIVS---YNMVTGV 335
              +WT    M            R     V V   ++ +  ++   G+ +   Y++    
Sbjct: 177 ATETWTELCPMIEA---------RKNHGLVFVKDKIFAVGGQNGLGGLDNVEYYDIKLNE 227

Query: 336 WKQFIIPTPLHLNDHTLAECGGRIMLVG 363
           W + + P P        A  G  + ++ 
Sbjct: 228 W-KMVSPMPWKGVTVKCAAVGSIVYVLA 254

>4asc_A Kelch repeat and BTB domain-containing protein 5; protein binding, cytoskeleton; 1.78A {Homo sapiens} Length = 315

 Score = 45.4 bits (108), Expect = 2e-05
 Identities = 41/213 (19%), Positives = 60/213 (28%), Gaps = 51/213 (23%)

Query: 180 VNSGAMYDPSLKKWHHPTISSLPTKMIILPVASAGGLV-----CFLDIGHRN-FYVCNPL 233
           ++S   YD    KW       LP  +    V S   LV        D    N   V +P 
Sbjct: 116 LDSVMCYDRLSFKWG--ESDPLPYVVYGHTVLSHMDLVYVIGGKGSDRKCLNKMCVYDPK 173

Query: 234 TQSFKELPARSVKVWSRVAVGM-TLNGNSTSSGYKILWV--GCDGEY-----EIYDSLRN 285
              +KEL         R   G    +G         + V  G          E+Y    N
Sbjct: 174 KFEWKELAPMQTA---RSLFGATVHDG--------RIIVAAGVTDTGLTSSAEVYSITDN 222

Query: 286 SWTRPGSMPSNIKLPVSLNFRSQAVSVDGILYFM--RSDPEG------------IVSYNM 331
            W    + P       S       VS+ G LY +   +  E             I  YN 
Sbjct: 223 KWAPFEAFPQ----ERS---SLSLVSLVGTLYAIGGFATLETESGELVPTELNDIWRYNE 275

Query: 332 VTGVWKQFIIPTPLHLNDHTLAECGGRIMLVGL 364
               W+  ++    +           R+ ++ L
Sbjct: 276 EEKKWEG-VLREIAY--AAGATFLPVRLNVLRL 305

>4asc_A Kelch repeat and BTB domain-containing protein 5; protein binding, cytoskeleton; 1.78A {Homo sapiens} Length = 315

 Score = 41.2 bits (97), Expect = 4e-04
 Identities = 24/189 (12%), Positives = 46/189 (24%), Gaps = 62/189 (32%)

Query: 186 YDPSLKKWHHPTISSLPTKMIILPVASAGGLVCFLDIGHRNF-YVCNPLTQSFKELPARS 244
           YDP+  + +  ++S          V      +   +    N  +V               
Sbjct: 18  YDPAANECYCASLS--------SQVPKNHVSLVTKE----NQVFV--------------- 50

Query: 245 VKVWSRVAVGMTLNGNSTSSGYKILWVGCDGEYEIYDSLRNSWTRPGSMPSNIKLPVSLN 304
                    G               +         +D L + W     +PS         
Sbjct: 51  --------AGGLFYNEDNKEDPMSAYF------LQFDHLDSEWLGMPPLPSP-------- 88

Query: 305 FRSQ--AVSVDGILY----FMRSDPEGIVS----YNMVTGVWKQFIIPTPLHLNDHTLAE 354
            R           +Y        D E  +     Y+ ++  W     P P  +  HT+  
Sbjct: 89  -RCLFGLGEALNSIYVVGGREIKDGERCLDSVMCYDRLSFKW-GESDPLPYVVYGHTVLS 146

Query: 355 CGGRIMLVG 363
               + ++G
Sbjct: 147 HMDLVYVIG 155

>2woz_A Kelch repeat and BTB domain-containing protein 10; protein binding, invasion and metastasis, UBL conjugation pathway, UBL protein folding; 2.00A {Rattus norvegicus} Length = 318

 Score = 42.7 bits (101), Expect = 2e-04
 Identities = 37/181 (20%), Positives = 58/181 (32%), Gaps = 39/181 (21%)

Query: 176 THENVNSGAMYDPSLKKWHHPTISSLPTKMIILPVASAGGLV-----CFLDIGHRN-FYV 229
           T  +++S   YDP   KW    + +LP K+    V S  G++        D    N  ++
Sbjct: 122 TEASLDSVLCYDPVAAKWS--EVKNLPIKVYGHNVISHNGMIYCLGGKTDDKKCTNRVFI 179

Query: 230 CNPLTQSFKELPARSVKVWSRVAVGM-TLNGNSTSSGYKILWV--GCDGEY-----EIYD 281
            NP    +K+L         R   G+    G         + +  G   +      E +D
Sbjct: 180 YNPKKGDWKDLAPMKTP---RSMFGVAIHKG--------KIVIAGGVTEDGLSASVEAFD 228

Query: 282 SLRNSWTRPGSMPSNIKLPVSLNFRSQAVSVDGILYFM-----RSDPEGIVSYNMVTGVW 336
              N W      P       S       VS+ G LY +             +   V  +W
Sbjct: 229 LKTNKWEVMTEFPQ----ERS---SISLVSLAGSLYAIGGFAMIQLESKEFAPTEVNDIW 281

Query: 337 K 337
           K
Sbjct: 282 K 282

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	468
3ii7_A	306	Kelch-like protein 7; protein-binding, kelch-repea	99.85
2woz_A	318	Kelch repeat and BTB domain-containing protein 10;	99.84
4asc_A	315	Kelch repeat and BTB domain-containing protein 5;	99.84
1zgk_A	308	Kelch-like ECH-associated protein 1; beta-propelle	99.82
2xn4_A	302	Kelch-like protein 2; structural protein, cytoskel	99.82
2vpj_A	301	Kelch-like protein 12; adaptor protein, WNT signal	99.8
3ii7_A	306	Kelch-like protein 7; protein-binding, kelch-repea	99.76
2uvk_A	357	YJHT; unknown function, hypothetical protein, sial	99.74
2xn4_A	302	Kelch-like protein 2; structural protein, cytoskel	99.74
1zgk_A	308	Kelch-like ECH-associated protein 1; beta-propelle	99.74
4asc_A	315	Kelch repeat and BTB domain-containing protein 5;	99.73
2vpj_A	301	Kelch-like protein 12; adaptor protein, WNT signal	99.72
2woz_A	318	Kelch repeat and BTB domain-containing protein 10;	99.71
2uvk_A	357	YJHT; unknown function, hypothetical protein, sial	99.69
1k3i_A	656	Galactose oxidase precursor; blade beta propeller,	99.53
2zwa_A	695	Leucine carboxyl methyltransferase 2; HET: SAH CIT	99.51
2zwa_A	695	Leucine carboxyl methyltransferase 2; HET: SAH CIT	99.33
1k3i_A	656	Galactose oxidase precursor; blade beta propeller,	99.21
1fs1_A	53	SKP2 F-BOX, cyclin A/CDK2-associated P19; F-BOX, L	98.96
3v7d_B	464	Cell division control protein 4; WD 40 domain, pho	98.7
2e31_A	297	FBS1, F-box only protein 2; ubiquitin, SCF, ubiqui	98.69
2ovr_B	445	FBW7, F-BOX/WD repeat protein 7, F-box PROT; WD40	98.67
1p22_A	435	F-BOX/WD-repeat protein 1A; ubiquitination, degrad	98.61
3l2o_B	312	F-box only protein 4; small G protein fold, UBL co	97.7
2ast_B	336	S-phase kinase-associated protein 2; SCF-substrate	97.42
3dsm_A	328	Uncharacterized protein bacuni_02894; seven_blated	97.3
2p1m_B	594	Transport inhibitor response 1 protein; F-BOX, leu	97.15
3dsm_A	328	Uncharacterized protein bacuni_02894; seven_blated	96.75
3mbr_X	243	Glutamine cyclotransferase; beta-propeller; 1.44A	96.57
3hfq_A	347	Uncharacterized protein LP_2219; Q88V64_lacpl, NES	96.2
3nol_A	262	Glutamine cyclotransferase; beta-propeller, glutam	96.09
3jrp_A	379	Fusion protein of protein transport protein SEC13	95.98
4gga_A	420	P55CDC, cell division cycle protein 20 homolog; ce	95.74
2z2n_A	299	Virginiamycin B lyase; seven-bladed beta-propeller	95.66
2qc5_A	300	Streptogramin B lactonase; beta propeller, lyase;	95.62
3mbr_X	243	Glutamine cyclotransferase; beta-propeller; 1.44A	95.54
3nok_A	268	Glutaminyl cyclase; beta-propeller, cyclotransfera	95.46
3ogk_B	592	Coronatine-insensitive protein 1; leucine rich rep	95.37
1l0q_A	391	Surface layer protein; SLP, S-layer, 7-bladed beta	95.21
2aq5_A	402	Coronin-1A; WD40 repeat, 7-bladed beta-propeller,	95.08
1ijq_A	316	LDL receptor, low-density lipoprotein receptor; be	95.07
1rwi_B	270	Serine/threonine-protein kinase PKND; beta propell	94.88
1q7f_A	286	NHL, brain tumor CG10719-PA; BRAT, NHL domain, NHL	94.88
1ri6_A	343	Putative isomerase YBHE; 7-bladed propeller, enzym	94.67
3jro_A	753	Fusion protein of protein transport protein SEC13	94.44
2iwa_A	266	Glutamine cyclotransferase; pyroglutamate, acyltra	94.44
3p5b_L	400	Low density lipoprotein receptor variant; B-propel	94.42
1npe_A	267	Nidogen, entactin; glycoprotein, basement membrane	94.41
1l0q_A	391	Surface layer protein; SLP, S-layer, 7-bladed beta	94.41
3no2_A	276	Uncharacterized protein; six-bladed beta-propeller	94.33
3nol_A	262	Glutamine cyclotransferase; beta-propeller, glutam	94.26
3v65_B	386	Low-density lipoprotein receptor-related protein;	94.11
2qc5_A	300	Streptogramin B lactonase; beta propeller, lyase;	94.04
4ggc_A	318	P55CDC, cell division cycle protein 20 homolog; ce	93.93
3q7m_A	376	Lipoprotein YFGL, BAMB; beta-propeller, BAM comple	93.93
3e5z_A	296	Putative gluconolactonase; X-RAY NESG Q9RXN3 gluco	93.74
2z2n_A	299	Virginiamycin B lyase; seven-bladed beta-propeller	93.74
3m0c_C	791	LDL receptor, low-density lipoprotein receptor; pr	93.71
3nok_A	268	Glutaminyl cyclase; beta-propeller, cyclotransfera	93.62
3jrp_A	379	Fusion protein of protein transport protein SEC13	93.55
3u4y_A	331	Uncharacterized protein; structural genomics, PSI-	93.4
4aez_A	401	CDC20, WD repeat-containing protein SLP1; cell cyc	93.38
3q7m_A	376	Lipoprotein YFGL, BAMB; beta-propeller, BAM comple	93.21
3v64_C	349	Agrin; beta propeller, laminin-G, signaling, prote	92.98
1rwi_B	270	Serine/threonine-protein kinase PKND; beta propell	92.88
2iwa_A	266	Glutamine cyclotransferase; pyroglutamate, acyltra	92.79
2ovr_B	445	FBW7, F-BOX/WD repeat protein 7, F-box PROT; WD40	92.59
1k8k_C	372	P40, ARP2/3 complex 41 kDa subunit, P41-ARC; beta-	92.1
2ojh_A	297	Uncharacterized protein ATU1656/AGR_C_3050; TOLB,	92.04
2pm7_B	297	Protein transport protein SEC13, protein transport	91.93
1erj_A	393	Transcriptional repressor TUP1; beta-propeller, tr	91.91
3bws_A	433	Protein LP49; two-domain, immunoglobulin-like, 7-b	91.9
3v9f_A	781	Two-component system sensor histidine kinase/RESP	91.86
3m0c_C	791	LDL receptor, low-density lipoprotein receptor; pr	91.78
3g4e_A	297	Regucalcin; six bladed beta-propeller, gluconolcat	91.58
3vgz_A	353	Uncharacterized protein YNCE; beta-propeller, prot	91.06
3p5b_L	400	Low density lipoprotein receptor variant; B-propel	91.05
3v65_B	386	Low-density lipoprotein receptor-related protein;	91.04
3dwl_C	377	Actin-related protein 2/3 complex subunit 1; prope	91.01
3dwl_C	377	Actin-related protein 2/3 complex subunit 1; prope	90.96
2pm7_B	297	Protein transport protein SEC13, protein transport	90.9
1gxr_A	337	ESG1, transducin-like enhancer protein 1; transcri	90.88
2vdu_B	450	TRNA (guanine-N(7)-)-methyltransferase- associated	90.84
3lrv_A	343	PRE-mRNA-splicing factor 19; PRP19, WD40, E3 ubiqu	90.63
3hfq_A	347	Uncharacterized protein LP_2219; Q88V64_lacpl, NES	90.59
3sov_A	318	LRP-6, low-density lipoprotein receptor-related pr	90.51
1pjx_A	314	Dfpase, DIISOPROPYLFLUOROPHOSPHATASE; phosphotries	90.39
4g56_B	357	MGC81050 protein; protein arginine methyltransfera	90.27
3u4y_A	331	Uncharacterized protein; structural genomics, PSI-	90.24
4aow_A	340	Guanine nucleotide-binding protein subunit beta-2;	90.17
3hrp_A	409	Uncharacterized protein; NP_812590.1, structural g	90.08
3vl1_A	420	26S proteasome regulatory subunit RPN14; beta-prop	89.88
3ei3_B	383	DNA damage-binding protein 2; UV-damage, DDB, nucl	89.85
3bws_A	433	Protein LP49; two-domain, immunoglobulin-like, 7-b	89.69
1qks_A	567	Cytochrome CD1 nitrite reductase; enzyme, oxidored	89.48
1ijq_A	316	LDL receptor, low-density lipoprotein receptor; be	89.39
1q7f_A	286	NHL, brain tumor CG10719-PA; BRAT, NHL domain, NHL	89.37
3scy_A	361	Hypothetical bacterial 6-phosphogluconolactonase;	89.25
1ri6_A	343	Putative isomerase YBHE; 7-bladed propeller, enzym	89.04
4gqb_B	344	Methylosome protein 50; TIM barrel, beta-propeller	89.03
4ery_A	312	WD repeat-containing protein 5; WD40, WIN motif, b	88.86
4a2l_A	795	BT_4663, two-component system sensor histidine kin	88.85
4ery_A	312	WD repeat-containing protein 5; WD40, WIN motif, b	88.72
3jro_A	753	Fusion protein of protein transport protein SEC13	88.64
1p22_A	435	F-BOX/WD-repeat protein 1A; ubiquitination, degrad	88.61
3fm0_A	345	Protein CIAO1; WDR39,SGC,WD40,CIAO1, nucleus, WD r	88.53
4aez_A	401	CDC20, WD repeat-containing protein SLP1; cell cyc	88.34
3fvz_A	329	Peptidyl-glycine alpha-amidating monooxygenase; be	88.31
1k8k_C	372	P40, ARP2/3 complex 41 kDa subunit, P41-ARC; beta-	87.96
4g56_B	357	MGC81050 protein; protein arginine methyltransfera	87.89
3v9f_A	781	Two-component system sensor histidine kinase/RESP	87.83
2aq5_A	402	Coronin-1A; WD40 repeat, 7-bladed beta-propeller,	87.66
1nir_A	543	Nitrite reductase; hemoprotein, denitrification, d	87.36
4gqb_B	344	Methylosome protein 50; TIM barrel, beta-propeller	87.21
2dg1_A	333	DRP35, lactonase; beta propeller, hydrolase; 1.72A	87.08
4e54_B	435	DNA damage-binding protein 2; beta barrel, double	86.94
3vl1_A	420	26S proteasome regulatory subunit RPN14; beta-prop	86.93
1gxr_A	337	ESG1, transducin-like enhancer protein 1; transcri	86.77
3azo_A	662	Aminopeptidase; POP family, hydrolase; 2.00A {Stre	86.52
3g4e_A	297	Regucalcin; six bladed beta-propeller, gluconolcat	86.44
2hes_X	330	YDR267CP; beta-propeller, WD40 repeat, biosyntheti	86.26
3vgz_A	353	Uncharacterized protein YNCE; beta-propeller, prot	86.03
3mkq_A	814	Coatomer beta'-subunit; beta-propeller, alpha-sole	86.02
4a0p_A	628	LRP6, LRP-6, low-density lipoprotein receptor-rela	85.98
1n7d_A	699	LDL receptor, low-density lipoprotein receptor; fa	85.97
3zwl_B	369	Eukaryotic translation initiation factor 3 subuni;	85.92
1nir_A	543	Nitrite reductase; hemoprotein, denitrification, d	85.9
1yfq_A	342	Cell cycle arrest protein BUB3; WD repeat WD40 rep	85.82
2p4o_A	306	Hypothetical protein; putative lactonase, structur	85.32
3s94_A	619	LRP-6, low-density lipoprotein receptor-related pr	85.28
1n7d_A	699	LDL receptor, low-density lipoprotein receptor; fa	85.17
2dg1_A	333	DRP35, lactonase; beta propeller, hydrolase; 1.72A	85.12
1npe_A	267	Nidogen, entactin; glycoprotein, basement membrane	84.85
3bg1_A	316	Protein SEC13 homolog; NPC, transport, WD repeat,	84.83
2bkl_A	695	Prolyl endopeptidase; mechanistic study, celiac sp	84.5
2hes_X	330	YDR267CP; beta-propeller, WD40 repeat, biosyntheti	84.27
3fvz_A	329	Peptidyl-glycine alpha-amidating monooxygenase; be	84.1
2hqs_A	415	Protein TOLB; TOLB, PAL, TOL, transport protein-li	84.06
3azo_A	662	Aminopeptidase; POP family, hydrolase; 2.00A {Stre	83.56
2ojh_A	297	Uncharacterized protein ATU1656/AGR_C_3050; TOLB,	83.33
2ynn_A	304	Coatomer subunit beta'; protein transport, peptide	82.81
2ghs_A	326	AGR_C_1268P; regucalcin, structural genomics, join	82.67
4a11_B	408	DNA excision repair protein ERCC-8; DNA binding pr	82.21
1got_B	340	GT-beta; complex (GTP-binding/transducer), G prote	82.0
3ow8_A	321	WD repeat-containing protein 61; structural genomi	81.58
3ow8_A	321	WD repeat-containing protein 61; structural genomi	81.33
2ad6_A	571	Methanol dehydrogenase subunit 1; PQQ configuratio	81.31
3bg1_A	316	Protein SEC13 homolog; NPC, transport, WD repeat,	81.13
1kb0_A	677	Quinohemoprotein alcohol dehydrogenase; beta-prope	80.9
3mkq_A	814	Coatomer beta'-subunit; beta-propeller, alpha-sole	80.13
2ghs_A	326	AGR_C_1268P; regucalcin, structural genomics, join	80.03

>3ii7_A Kelch-like protein 7; protein-binding, kelch-repeat, structural genomics, structur genomics consortium, SGC, kelch repeat, nucleus, protein BI; 1.63A {Homo sapiens}

Probab=99.85  E-value=2e-19  Score=173.60  Aligned_cols=252  Identities=16%  Similarity=0.181  Sum_probs=180.5

Q ss_pred             CEEEEEeeCC-CCCcceecCCCCcccCCCCCCCCCCcEEEEeeecCceEEEEEcC----CceEEEEcCCCCceEecCCCC
Q 012227          170 PWFYTITHEN-VNSGAMYDPSLKKWHHPTISSLPTKMIILPVASAGGLVCFLDIG----HRNFYVCNPLTQSFKELPARS  244 (468)
Q Consensus       170 p~l~~~~~~~-~~~~~~~dp~~~~w~~~~l~~~p~~~~~~~~~s~~GLl~~~~~~----~~~~~V~NP~T~~~~~LP~~~  244 (468)
                      ..++++.... ......||+..++|..++  .+|..+....++..+|.|++.++.    ...++++||.|++|..+++++
T Consensus        12 ~~l~~~GG~~~~~~~~~~d~~~~~W~~~~--~~p~~r~~~~~~~~~~~lyv~GG~~~~~~~~~~~~d~~~~~W~~~~~~p   89 (306)
T 3ii7_A           12 DYRIALFGGSQPQSCRYFNPKDYSWTDIR--CPFEKRRDAACVFWDNVVYILGGSQLFPIKRMDCYNVVKDSWYSKLGPP   89 (306)
T ss_dssp             CEEEEEECCSSTTSEEEEETTTTEEEECC--CCSCCCBSCEEEEETTEEEEECCBSSSBCCEEEEEETTTTEEEEEECCS
T ss_pred             ceEEEEeCCCCCceEEEecCCCCCEecCC--CCCcccceeEEEEECCEEEEEeCCCCCCcceEEEEeCCCCeEEECCCCC
Confidence            4566665432 344678999999998654  233222111244557777666542    257999999999999999877


Q ss_pred             cCCcceeEEEEEEcCCCCCCCeEEEEEEecC-------cEEEEeCCCCCccCCCCCCCCcccCcccccccceEEECCEEE
Q 012227          245 VKVWSRVAVGMTLNGNSTSSGYKILWVGCDG-------EYEIYDSLRNSWTRPGSMPSNIKLPVSLNFRSQAVSVDGILY  317 (468)
Q Consensus       245 ~~~~~~~~~~~~~d~~~~~~~ykVv~v~~~~-------~v~vy~s~t~~W~~~~~~p~~~~~~~~~~~~~~~v~~~G~lY  317 (468)
                      ..+....++  ..+       .+|+++|+..       .+++||+.+++|+.++.+|..       +..+.++.++|++|
T Consensus        90 ~~r~~~~~~--~~~-------~~iyv~GG~~~~~~~~~~~~~~d~~~~~W~~~~~~p~~-------r~~~~~~~~~~~iy  153 (306)
T 3ii7_A           90 TPRDSLAAC--AAE-------GKIYTSGGSEVGNSALYLFECYDTRTESWHTKPSMLTQ-------RCSHGMVEANGLIY  153 (306)
T ss_dssp             SCCBSCEEE--EET-------TEEEEECCBBTTBSCCCCEEEEETTTTEEEEECCCSSC-------CBSCEEEEETTEEE
T ss_pred             ccccceeEE--EEC-------CEEEEECCCCCCCcEeeeEEEEeCCCCceEeCCCCcCC-------cceeEEEEECCEEE
Confidence            655443322  233       4788888742       399999999999999877654       23456778999999


Q ss_pred             EEEcC---------CCeEEEEECCCCeEEEeecCCCCCCCCceEEEECCeEEEEEEEeeCCccEEEEEEEecCCCCeEEE
Q 012227          318 FMRSD---------PEGIVSYNMVTGVWKQFIIPTPLHLNDHTLAECGGRIMLVGLLTKNAATCVCIWELQKMTLLWKEV  388 (468)
Q Consensus       318 ~~~~~---------~~~i~~fD~~~~~w~~i~~P~p~~~~~~~l~~~~G~L~lv~~~~~~~~~~i~Vw~ld~~~~~W~~v  388 (468)
                      ++++.         ...+..||+.+++|+.+ .++|..+....++.++|+||++++.... ...-++|.+|..+++|+++
T Consensus       154 v~GG~~~~~~~~~~~~~~~~yd~~~~~W~~~-~~~p~~r~~~~~~~~~~~i~v~GG~~~~-~~~~~~~~yd~~~~~W~~~  231 (306)
T 3ii7_A          154 VCGGSLGNNVSGRVLNSCEVYDPATETWTEL-CPMIEARKNHGLVFVKDKIFAVGGQNGL-GGLDNVEYYDIKLNEWKMV  231 (306)
T ss_dssp             EECCEESCTTTCEECCCEEEEETTTTEEEEE-CCCSSCCBSCEEEEETTEEEEECCEETT-EEBCCEEEEETTTTEEEEC
T ss_pred             EECCCCCCCCcccccceEEEeCCCCCeEEEC-CCccchhhcceEEEECCEEEEEeCCCCC-CCCceEEEeeCCCCcEEEC
Confidence            99861         35689999999999998 4677777778888999999999986542 2234688899999999999


Q ss_pred             EeeChhhhhcccCcceEEEEEecCCEEEEEeeeC---CCCeEEEEECCCCcEEEccCCccCCCC
Q 012227          389 DRMPNIWCLDFYGKHVRMTCLGNKGLLMLSLRSR---QMNRLVTYNVMSREWLKVPGCVVPRGR  449 (468)
Q Consensus       389 ~~mp~~~~~~~~~~~~~~~~~~~~~~I~~~~~~~---~~~~l~~YD~~t~~w~~v~~~~~~~~~  449 (468)
                      ..+|.....        ..++..++.||+..+..   ....+++||+++++|+.++.++.++..
T Consensus       232 ~~~p~~r~~--------~~~~~~~~~i~v~GG~~~~~~~~~~~~yd~~~~~W~~~~~~~~~r~~  287 (306)
T 3ii7_A          232 SPMPWKGVT--------VKCAAVGSIVYVLAGFQGVGRLGHILEYNTETDKWVANSKVRAFPVT  287 (306)
T ss_dssp             CCCSCCBSC--------CEEEEETTEEEEEECBCSSSBCCEEEEEETTTTEEEEEEEEECCSCT
T ss_pred             CCCCCCccc--------eeEEEECCEEEEEeCcCCCeeeeeEEEEcCCCCeEEeCCCcccccce
Confidence            888754332        23344478888754322   346799999999999999988876643

>2woz_A Kelch repeat and BTB domain-containing protein 10; protein binding, invasion and metastasis, UBL conjugation pathway, UBL protein folding; 2.00A {Rattus norvegicus}

Probab=99.84  E-value=7.6e-19  Score=170.52  Aligned_cols=254  Identities=16%  Similarity=0.219  Sum_probs=176.4

Q ss_pred             cceecCCCCcccCCCCCCCCCCcEEEEeeecCceEEEEEcC-----------CceEEEEcCCCCceEecCCCCcCCccee
Q 012227          183 GAMYDPSLKKWHHPTISSLPTKMIILPVASAGGLVCFLDIG-----------HRNFYVCNPLTQSFKELPARSVKVWSRV  251 (468)
Q Consensus       183 ~~~~dp~~~~w~~~~l~~~p~~~~~~~~~s~~GLl~~~~~~-----------~~~~~V~NP~T~~~~~LP~~~~~~~~~~  251 (468)
                      ...|||.+++|...+++......... ++..+|.|++.++.           ...++++||.|++|..+++++..+....
T Consensus        26 ~~~yd~~~~~W~~~~~~~~~~r~~~~-~~~~~~~lyv~GG~~~~~~~~~~~~~~~~~~~d~~~~~W~~~~~~p~~r~~~~  104 (318)
T 2woz_A           26 AVAYDPMENECYLTALAEQIPRNHSS-IVTQQNQVYVVGGLYVDEENKDQPLQSYFFQLDNVSSEWVGLPPLPSARCLFG  104 (318)
T ss_dssp             EEEEETTTTEEEEEEECTTSCSSEEE-EECSSSCEEEEESSCC-------CCCBEEEEEETTTTEEEECSCBSSCBCSCE
T ss_pred             eEEECCCCCceecccCCccCCccceE-EEEECCEEEEECCcccCccccCCCccccEEEEeCCCCcEEECCCCCccccccc
Confidence            46899999999874444321222222 55667777666541           1138899999999999998776554333


Q ss_pred             EEEEEEcCCCCCCCeEEEEEEecC--------cEEEEeCCCCCccCCCCCCCCcccCcccccccceEEECCEEEEEEcC-
Q 012227          252 AVGMTLNGNSTSSGYKILWVGCDG--------EYEIYDSLRNSWTRPGSMPSNIKLPVSLNFRSQAVSVDGILYFMRSD-  322 (468)
Q Consensus       252 ~~~~~~d~~~~~~~ykVv~v~~~~--------~v~vy~s~t~~W~~~~~~p~~~~~~~~~~~~~~~v~~~G~lY~~~~~-  322 (468)
                      + + ..+       -+|+++|+..        .+++||+.+++|+.++.+|..       +..+.+++++|+||++++. 
T Consensus       105 ~-~-~~~-------~~iyv~GG~~~~~~~~~~~~~~yd~~~~~W~~~~~~p~~-------r~~~~~~~~~~~iyv~GG~~  168 (318)
T 2woz_A          105 L-G-EVD-------DKIYVVAGKDLQTEASLDSVLCYDPVAAKWSEVKNLPIK-------VYGHNVISHNGMIYCLGGKT  168 (318)
T ss_dssp             E-E-EET-------TEEEEEEEEBTTTCCEEEEEEEEETTTTEEEEECCCSSC-------EESCEEEEETTEEEEECCEE
T ss_pred             e-E-EEC-------CEEEEEcCccCCCCcccceEEEEeCCCCCEeECCCCCCc-------ccccEEEEECCEEEEEcCCC
Confidence            2 2 223       4788888742        389999999999998877654       2345677799999999862 


Q ss_pred             -----CCeEEEEECCCCeEEEeecCCCCCCCCceEEEECCeEEEEEEEeeCCccEEEEEEEecCCCCeEEEEeeChhhhh
Q 012227          323 -----PEGIVSYNMVTGVWKQFIIPTPLHLNDHTLAECGGRIMLVGLLTKNAATCVCIWELQKMTLLWKEVDRMPNIWCL  397 (468)
Q Consensus       323 -----~~~i~~fD~~~~~w~~i~~P~p~~~~~~~l~~~~G~L~lv~~~~~~~~~~i~Vw~ld~~~~~W~~v~~mp~~~~~  397 (468)
                           ...+..||+.+++|+.+ .++|..+....++.++|+||++++... ....-.+|.+|..+++|+++..+|.....
T Consensus       169 ~~~~~~~~~~~yd~~~~~W~~~-~~~p~~r~~~~~~~~~~~iyv~GG~~~-~~~~~~~~~yd~~~~~W~~~~~~p~~r~~  246 (318)
T 2woz_A          169 DDKKCTNRVFIYNPKKGDWKDL-APMKTPRSMFGVAIHKGKIVIAGGVTE-DGLSASVEAFDLKTNKWEVMTEFPQERSS  246 (318)
T ss_dssp             SSSCBCCCEEEEETTTTEEEEE-CCCSSCCBSCEEEEETTEEEEEEEEET-TEEEEEEEEEETTTCCEEECCCCSSCCBS
T ss_pred             CCCCccceEEEEcCCCCEEEEC-CCCCCCcccceEEEECCEEEEEcCcCC-CCccceEEEEECCCCeEEECCCCCCcccc
Confidence                 24699999999999998 466666677788889999999998764 22345789999999999999888765432


Q ss_pred             cccCcceEEEEEecCCEEEEEeeeC------------CCCeEEEEECCCCcEEEccCCccCCCCccceeeeeeeeeeecC
Q 012227          398 DFYGKHVRMTCLGNKGLLMLSLRSR------------QMNRLVTYNVMSREWLKVPGCVVPRGRKRQWIACGTAFHPCLM  465 (468)
Q Consensus       398 ~~~~~~~~~~~~~~~~~I~~~~~~~------------~~~~l~~YD~~t~~w~~v~~~~~~~~~~~~~~~~g~~f~P~~~  465 (468)
                              ..++..++.||+..+..            ....+++||+++++|+++  ++.++......+..+-.|.-+++
T Consensus       247 --------~~~~~~~~~i~v~GG~~~~~~~~~~~~~~~~~~v~~yd~~~~~W~~~--~~~~r~~~~~~~~~~~iyi~~~~  316 (318)
T 2woz_A          247 --------ISLVSLAGSLYAIGGFAMIQLESKEFAPTEVNDIWKYEDDKKEWAGM--LKEIRYASGASCLATRLNLFKLS  316 (318)
T ss_dssp             --------CEEEEETTEEEEECCBCCBC----CCBCCBCCCEEEEETTTTEEEEE--ESCCGGGTTCEEEEEEEEGGGCB
T ss_pred             --------eEEEEECCEEEEECCeeccCCCCceeccceeeeEEEEeCCCCEehhh--cccccccccceeeCCEEEEEEee
Confidence                    22334467888743321            135799999999999999  34443332234444555544443

>4asc_A Kelch repeat and BTB domain-containing protein 5; protein binding, cytoskeleton; 1.78A {Homo sapiens}

Probab=99.84  E-value=7.5e-19  Score=170.35  Aligned_cols=234  Identities=15%  Similarity=0.186  Sum_probs=167.5

Q ss_pred             CcceecCCCCcccCCCCCCCCCCcEEEEeeecCceEEEEEcC------C-----ceEEEEcCCCCceEecCCCCcCCcce
Q 012227          182 SGAMYDPSLKKWHHPTISSLPTKMIILPVASAGGLVCFLDIG------H-----RNFYVCNPLTQSFKELPARSVKVWSR  250 (468)
Q Consensus       182 ~~~~~dp~~~~w~~~~l~~~p~~~~~~~~~s~~GLl~~~~~~------~-----~~~~V~NP~T~~~~~LP~~~~~~~~~  250 (468)
                      ....|||.+++|...++|. |..+....++..+|.|++.++.      .     ..++++||.|++|..+++++..+...
T Consensus        14 ~~~~yd~~~~~W~~~~~~~-p~~r~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~~~~~~~d~~~~~W~~~~~~p~~r~~~   92 (315)
T 4asc_A           14 GAVAYDPAANECYCASLSS-QVPKNHVSLVTKENQVFVAGGLFYNEDNKEDPMSAYFLQFDHLDSEWLGMPPLPSPRCLF   92 (315)
T ss_dssp             EEEEEETTTTEEEEEECCC-CSCSSEEEEECTTCCEEEEEEEEECSSCSSSCEEEEEEEEETTTTEEEECCCBSSCEESC
T ss_pred             ceEEECCCCCeEecCCCCC-CCCccceEEEEECCEEEEEcCcccCCCCCccccccceEEecCCCCeEEECCCCCcchhce
Confidence            3568999999998644443 2122222255567766655431      1     23899999999999999877554433


Q ss_pred             eEEEEEEcCCCCCCCeEEEEEEec---------CcEEEEeCCCCCccCCCCCCCCcccCcccccccceEEECCEEEEEEc
Q 012227          251 VAVGMTLNGNSTSSGYKILWVGCD---------GEYEIYDSLRNSWTRPGSMPSNIKLPVSLNFRSQAVSVDGILYFMRS  321 (468)
Q Consensus       251 ~~~~~~~d~~~~~~~ykVv~v~~~---------~~v~vy~s~t~~W~~~~~~p~~~~~~~~~~~~~~~v~~~G~lY~~~~  321 (468)
                      .++  ..+       -+|+++|+.         ..+++||+.+++|+.++.+|..       +..+.++.++|+||++++
T Consensus        93 ~~~--~~~-------~~lyv~GG~~~~~~~~~~~~~~~~d~~~~~W~~~~~~p~~-------r~~~~~~~~~~~iyv~GG  156 (315)
T 4asc_A           93 GLG--EAL-------NSIYVVGGREIKDGERCLDSVMCYDRLSFKWGESDPLPYV-------VYGHTVLSHMDLVYVIGG  156 (315)
T ss_dssp             EEE--EET-------TEEEEECCEESSTTCCBCCCEEEEETTTTEEEECCCCSSC-------CBSCEEEEETTEEEEECC
T ss_pred             eEE--EEC-------CEEEEEeCCcCCCCCcccceEEEECCCCCcEeECCCCCCc-------ccceeEEEECCEEEEEeC
Confidence            222  223       488888872         1399999999999999887654       235667789999999986


Q ss_pred             C------CCeEEEEECCCCeEEEeecCCCCCCCCceEEEECCeEEEEEEEeeCCccEEEEEEEecCCCCeEEEEeeChhh
Q 012227          322 D------PEGIVSYNMVTGVWKQFIIPTPLHLNDHTLAECGGRIMLVGLLTKNAATCVCIWELQKMTLLWKEVDRMPNIW  395 (468)
Q Consensus       322 ~------~~~i~~fD~~~~~w~~i~~P~p~~~~~~~l~~~~G~L~lv~~~~~~~~~~i~Vw~ld~~~~~W~~v~~mp~~~  395 (468)
                      .      ...+..||+.+++|+.+ .++|..+....++.++|+||++++.... ...-.+|++|..+++|+++..+|..+
T Consensus       157 ~~~~~~~~~~~~~yd~~~~~W~~~-~~~p~~r~~~~~~~~~~~iyv~GG~~~~-~~~~~~~~yd~~~~~W~~~~~~p~~r  234 (315)
T 4asc_A          157 KGSDRKCLNKMCVYDPKKFEWKEL-APMQTARSLFGATVHDGRIIVAAGVTDT-GLTSSAEVYSITDNKWAPFEAFPQER  234 (315)
T ss_dssp             BCTTSCBCCCEEEEETTTTEEEEC-CCCSSCCBSCEEEEETTEEEEEEEECSS-SEEEEEEEEETTTTEEEEECCCSSCC
T ss_pred             CCCCCcccceEEEEeCCCCeEEEC-CCCCCchhceEEEEECCEEEEEeccCCC-CccceEEEEECCCCeEEECCCCCCcc
Confidence            3      24699999999999997 4677777778888999999999987542 23458899999999999998887554


Q ss_pred             hhcccCcceEEEEEecCCEEEEEeeeC------------CCCeEEEEECCCCcEEEccC
Q 012227          396 CLDFYGKHVRMTCLGNKGLLMLSLRSR------------QMNRLVTYNVMSREWLKVPG  442 (468)
Q Consensus       396 ~~~~~~~~~~~~~~~~~~~I~~~~~~~------------~~~~l~~YD~~t~~w~~v~~  442 (468)
                      ..        ..++..++.||+..+..            ....+++||+++++|+.+..
T Consensus       235 ~~--------~~~~~~~~~l~v~GG~~~~~~~~~~~~~~~~~~v~~yd~~~~~W~~~~~  285 (315)
T 4asc_A          235 SS--------LSLVSLVGTLYAIGGFATLETESGELVPTELNDIWRYNEEEKKWEGVLR  285 (315)
T ss_dssp             BS--------CEEEEETTEEEEEEEEEEEECTTSCEEEEEEEEEEEEETTTTEEEEEES
T ss_pred             cc--------eeEEEECCEEEEECCccccCcCCccccccccCcEEEecCCCChhhhhcc
Confidence            32        22334467887743321            12468999999999999943

>1zgk_A Kelch-like ECH-associated protein 1; beta-propeller, kelch repeat motif, protein binding; HET: MSE; 1.35A {Homo sapiens} SCOP: b.68.11.1 PDB: 2flu_X 1u6d_X 1x2j_A 1x2r_A 2dyh_A 2z32_A 3ade_A

Probab=99.82  E-value=1e-18  Score=168.84  Aligned_cols=250  Identities=16%  Similarity=0.170  Sum_probs=176.5

Q ss_pred             EEEEEeeC---CCCCcceecCCCCcccCCCCCCCCCCcEEEEeeecCceEEEEEcC---------CceEEEEcCCCCceE
Q 012227          171 WFYTITHE---NVNSGAMYDPSLKKWHHPTISSLPTKMIILPVASAGGLVCFLDIG---------HRNFYVCNPLTQSFK  238 (468)
Q Consensus       171 ~l~~~~~~---~~~~~~~~dp~~~~w~~~~l~~~p~~~~~~~~~s~~GLl~~~~~~---------~~~~~V~NP~T~~~~  238 (468)
                      .++++...   .......||+..++|..++  .+|..+....++..+|.|++.++.         ...++++||.|++|.
T Consensus        26 ~i~v~GG~~~~~~~~~~~~d~~~~~W~~~~--~~p~~r~~~~~~~~~~~lyv~GG~~~~~~~~~~~~~~~~~d~~~~~W~  103 (308)
T 1zgk_A           26 LIYTAGGYFRQSLSYLEAYNPSNGTWLRLA--DLQVPRSGLAGCVVGGLLYAVGGRNNSPDGNTDSSALDCYNPMTNQWS  103 (308)
T ss_dssp             CEEEECCBSSSBCCCEEEEETTTTEEEECC--CCSSCCBSCEEEEETTEEEEECCEEEETTEEEECCCEEEEETTTTEEE
T ss_pred             EEEEEeCcCCCCcceEEEEcCCCCeEeECC--CCCcccccceEEEECCEEEEECCCcCCCCCCeecceEEEECCCCCeEe
Confidence            35555432   1233568999999998663  333222111144557766665432         136899999999999


Q ss_pred             ecCCCCcCCcceeEEEEEEcCCCCCCCeEEEEEEec------CcEEEEeCCCCCccCCCCCCCCcccCcccccccceEEE
Q 012227          239 ELPARSVKVWSRVAVGMTLNGNSTSSGYKILWVGCD------GEYEIYDSLRNSWTRPGSMPSNIKLPVSLNFRSQAVSV  312 (468)
Q Consensus       239 ~LP~~~~~~~~~~~~~~~~d~~~~~~~ykVv~v~~~------~~v~vy~s~t~~W~~~~~~p~~~~~~~~~~~~~~~v~~  312 (468)
                      .+++++..+....++  ..+       .+|+++|+.      ..+++||+.+++|+.++.+|..       +....++.+
T Consensus       104 ~~~~~p~~r~~~~~~--~~~-------~~iyv~GG~~~~~~~~~~~~yd~~~~~W~~~~~~p~~-------r~~~~~~~~  167 (308)
T 1zgk_A          104 PCAPMSVPRNRIGVG--VID-------GHIYAVGGSHGCIHHNSVERYEPERDEWHLVAPMLTR-------RIGVGVAVL  167 (308)
T ss_dssp             ECCCCSSCCBTCEEE--EET-------TEEEEECCEETTEECCCEEEEETTTTEEEECCCCSSC-------CBSCEEEEE
T ss_pred             ECCCCCcCccccEEE--EEC-------CEEEEEcCCCCCcccccEEEECCCCCeEeECCCCCcc-------ccceEEEEE
Confidence            999877655443322  233       378888763      3499999999999999877654       234567778


Q ss_pred             CCEEEEEEcC-----CCeEEEEECCCCeEEEeecCCCCCCCCceEEEECCeEEEEEEEeeCCccEEEEEEEecCCCCeEE
Q 012227          313 DGILYFMRSD-----PEGIVSYNMVTGVWKQFIIPTPLHLNDHTLAECGGRIMLVGLLTKNAATCVCIWELQKMTLLWKE  387 (468)
Q Consensus       313 ~G~lY~~~~~-----~~~i~~fD~~~~~w~~i~~P~p~~~~~~~l~~~~G~L~lv~~~~~~~~~~i~Vw~ld~~~~~W~~  387 (468)
                      +++||++++.     ...+..||+.+++|..+ .++|..+....++.++|+||++++.... ...-++|.+|..+++|++
T Consensus       168 ~~~iyv~GG~~~~~~~~~~~~yd~~~~~W~~~-~~~p~~r~~~~~~~~~~~iyv~GG~~~~-~~~~~v~~yd~~~~~W~~  245 (308)
T 1zgk_A          168 NRLLYAVGGFDGTNRLNSAECYYPERNEWRMI-TAMNTIRSGAGVCVLHNCIYAAGGYDGQ-DQLNSVERYDVETETWTF  245 (308)
T ss_dssp             TTEEEEECCBCSSCBCCCEEEEETTTTEEEEC-CCCSSCCBSCEEEEETTEEEEECCBCSS-SBCCCEEEEETTTTEEEE
T ss_pred             CCEEEEEeCCCCCCcCceEEEEeCCCCeEeeC-CCCCCccccceEEEECCEEEEEeCCCCC-CccceEEEEeCCCCcEEE
Confidence            9999999862     24699999999999987 4566666777888899999999976532 224478899999999999


Q ss_pred             EEeeChhhhhcccCcceEEEEEecCCEEEEEeeeC---CCCeEEEEECCCCcEEEccCCccCCC
Q 012227          388 VDRMPNIWCLDFYGKHVRMTCLGNKGLLMLSLRSR---QMNRLVTYNVMSREWLKVPGCVVPRG  448 (468)
Q Consensus       388 v~~mp~~~~~~~~~~~~~~~~~~~~~~I~~~~~~~---~~~~l~~YD~~t~~w~~v~~~~~~~~  448 (468)
                      +..||.....        ..++..++.||+..+..   ....+++||+++++|++++.+|.++.
T Consensus       246 ~~~~p~~r~~--------~~~~~~~~~i~v~GG~~~~~~~~~v~~yd~~~~~W~~~~~~p~~r~  301 (308)
T 1zgk_A          246 VAPMKHRRSA--------LGITVHQGRIYVLGGYDGHTFLDSVECYDPDTDTWSEVTRMTSGRS  301 (308)
T ss_dssp             CCCCSSCCBS--------CEEEEETTEEEEECCBCSSCBCCEEEEEETTTTEEEEEEECSSCCB
T ss_pred             CCCCCCCccc--------eEEEEECCEEEEEcCcCCCcccceEEEEcCCCCEEeecCCCCCCcc
Confidence            9888754321        22333478888753321   24579999999999999998887764

>2xn4_A Kelch-like protein 2; structural protein, cytoskeleton; 1.99A {Homo sapiens}

Probab=99.82  E-value=1.7e-18  Score=166.70  Aligned_cols=238  Identities=18%  Similarity=0.210  Sum_probs=169.8

Q ss_pred             CcceecCCCCcccCCCCCCCCCCcEEEEeeecCceEEEEEcC-----CceEEEEcCCCCceEecCCCCcCCcceeEEEEE
Q 012227          182 SGAMYDPSLKKWHHPTISSLPTKMIILPVASAGGLVCFLDIG-----HRNFYVCNPLTQSFKELPARSVKVWSRVAVGMT  256 (468)
Q Consensus       182 ~~~~~dp~~~~w~~~~l~~~p~~~~~~~~~s~~GLl~~~~~~-----~~~~~V~NP~T~~~~~LP~~~~~~~~~~~~~~~  256 (468)
                      ....||+..++|..++  .+|.......++..+|.|++.++.     ...++++||.|++|..+++++..+....++  .
T Consensus        31 ~~~~~d~~~~~W~~~~--~~p~~r~~~~~~~~~~~lyv~GG~~~~~~~~~~~~~d~~~~~W~~~~~~p~~r~~~~~~--~  106 (302)
T 2xn4_A           31 SVECYDFKEERWHQVA--ELPSRRCRAGMVYMAGLVFAVGGFNGSLRVRTVDSYDPVKDQWTSVANMRDRRSTLGAA--V  106 (302)
T ss_dssp             CEEEEETTTTEEEEEC--CCSSCCBSCEEEEETTEEEEESCBCSSSBCCCEEEEETTTTEEEEECCCSSCCBSCEEE--E
T ss_pred             cEEEEcCcCCcEeEcc--cCCcccccceEEEECCEEEEEeCcCCCccccceEEECCCCCceeeCCCCCccccceEEE--E
Confidence            3568999999998653  333222111134457766666432     246999999999999999877655443322  2


Q ss_pred             EcCCCCCCCeEEEEEEecC------cEEEEeCCCCCccCCCCCCCCcccCcccccccceEEECCEEEEEEcC-------C
Q 012227          257 LNGNSTSSGYKILWVGCDG------EYEIYDSLRNSWTRPGSMPSNIKLPVSLNFRSQAVSVDGILYFMRSD-------P  323 (468)
Q Consensus       257 ~d~~~~~~~ykVv~v~~~~------~v~vy~s~t~~W~~~~~~p~~~~~~~~~~~~~~~v~~~G~lY~~~~~-------~  323 (468)
                      ++       -+|+++|+..      .+++||+.+++|+.++.+|..       +....++.++|+||++++.       .
T Consensus       107 ~~-------~~iyv~GG~~~~~~~~~~~~~d~~~~~W~~~~~~p~~-------r~~~~~~~~~~~iyv~GG~~~~~~~~~  172 (302)
T 2xn4_A          107 LN-------GLLYAVGGFDGSTGLSSVEAYNIKSNEWFHVAPMNTR-------RSSVGVGVVGGLLYAVGGYDVASRQCL  172 (302)
T ss_dssp             ET-------TEEEEEEEECSSCEEEEEEEEETTTTEEEEECCCSSC-------CBSCEEEEETTEEEEECCEETTTTEEC
T ss_pred             EC-------CEEEEEcCCCCCccCceEEEEeCCCCeEeecCCCCCc-------ccCceEEEECCEEEEEeCCCCCCCccc
Confidence            33       3788888743      389999999999999877654       2345677789999999852       2


Q ss_pred             CeEEEEECCCCeEEEeecCCCCCCCCceEEEECCeEEEEEEEeeCCccEEEEEEEecCCCCeEEEEeeChhhhhcccCcc
Q 012227          324 EGIVSYNMVTGVWKQFIIPTPLHLNDHTLAECGGRIMLVGLLTKNAATCVCIWELQKMTLLWKEVDRMPNIWCLDFYGKH  403 (468)
Q Consensus       324 ~~i~~fD~~~~~w~~i~~P~p~~~~~~~l~~~~G~L~lv~~~~~~~~~~i~Vw~ld~~~~~W~~v~~mp~~~~~~~~~~~  403 (468)
                      ..+..||+.+++|+.+ .++|..+....++.++|+||++++.... ...-++|.+|..+++|+++..+|.....      
T Consensus       173 ~~~~~yd~~~~~W~~~-~~~p~~r~~~~~~~~~~~iyv~GG~~~~-~~~~~~~~yd~~~~~W~~~~~~~~~r~~------  244 (302)
T 2xn4_A          173 STVECYNATTNEWTYI-AEMSTRRSGAGVGVLNNLLYAVGGHDGP-LVRKSVEVYDPTTNAWRQVADMNMCRRN------  244 (302)
T ss_dssp             CCEEEEETTTTEEEEE-CCCSSCCBSCEEEEETTEEEEECCBSSS-SBCCCEEEEETTTTEEEEECCCSSCCBS------
T ss_pred             cEEEEEeCCCCcEEEC-CCCccccccccEEEECCEEEEECCCCCC-cccceEEEEeCCCCCEeeCCCCCCcccc------
Confidence            4689999999999998 4666667777888999999999986431 2234688899999999999888754321      


Q ss_pred             eEEEEEecCCEEEEEeeeC---CCCeEEEEECCCCcEEEcc-CCccCC
Q 012227          404 VRMTCLGNKGLLMLSLRSR---QMNRLVTYNVMSREWLKVP-GCVVPR  447 (468)
Q Consensus       404 ~~~~~~~~~~~I~~~~~~~---~~~~l~~YD~~t~~w~~v~-~~~~~~  447 (468)
                        ..++..++.||+..+..   ....+++||+++++|+.++ .++.++
T Consensus       245 --~~~~~~~~~i~v~GG~~~~~~~~~v~~yd~~~~~W~~~~~~~~~~r  290 (302)
T 2xn4_A          245 --AGVCAVNGLLYVVGGDDGSCNLASVEYYNPTTDKWTVVSSCMSTGR  290 (302)
T ss_dssp             --CEEEEETTEEEEECCBCSSSBCCCEEEEETTTTEEEECSSCCSSCC
T ss_pred             --CeEEEECCEEEEECCcCCCcccccEEEEcCCCCeEEECCcccCccc
Confidence              22334478888754322   2356999999999999997 667665

>2vpj_A Kelch-like protein 12; adaptor protein, WNT signaling pathway, protein-binding, UBI degradation, UBL conjugation pathway, CUL3, kelch repeat; 1.85A {Homo sapiens}

Probab=99.80  E-value=2.6e-18  Score=165.21  Aligned_cols=238  Identities=18%  Similarity=0.230  Sum_probs=170.3

Q ss_pred             CcceecCCCCcccCCCCCCCCCCcEEEEeeecCceEEEEEcC-----CceEEEEcCCCCc---eEecCCCCcCCcceeEE
Q 012227          182 SGAMYDPSLKKWHHPTISSLPTKMIILPVASAGGLVCFLDIG-----HRNFYVCNPLTQS---FKELPARSVKVWSRVAV  253 (468)
Q Consensus       182 ~~~~~dp~~~~w~~~~l~~~p~~~~~~~~~s~~GLl~~~~~~-----~~~~~V~NP~T~~---~~~LP~~~~~~~~~~~~  253 (468)
                      ....||+.+++|..++  .+|........+..+|.|++.++.     ...++++||.|++   |..+++++..+....++
T Consensus        32 ~~~~~d~~~~~W~~~~--~~p~~r~~~~~~~~~~~l~v~GG~~~~~~~~~~~~~d~~~~~~~~W~~~~~~p~~r~~~~~~  109 (301)
T 2vpj_A           32 VVEKYDPKTQEWSFLP--SITRKRRYVASVSLHDRIYVIGGYDGRSRLSSVECLDYTADEDGVWYSVAPMNVRRGLAGAT  109 (301)
T ss_dssp             CEEEEETTTTEEEECC--CCSSCCBSCEEEEETTEEEEECCBCSSCBCCCEEEEETTCCTTCCCEEECCCSSCCBSCEEE
T ss_pred             EEEEEcCCCCeEEeCC--CCChhhccccEEEECCEEEEEcCCCCCccCceEEEEECCCCCCCeeEECCCCCCCccceeEE
Confidence            3568999999998654  233222111144456766665432     2469999999999   99999877655443322


Q ss_pred             EEEEcCCCCCCCeEEEEEEec------CcEEEEeCCCCCccCCCCCCCCcccCcccccccceEEECCEEEEEEcC-----
Q 012227          254 GMTLNGNSTSSGYKILWVGCD------GEYEIYDSLRNSWTRPGSMPSNIKLPVSLNFRSQAVSVDGILYFMRSD-----  322 (468)
Q Consensus       254 ~~~~d~~~~~~~ykVv~v~~~------~~v~vy~s~t~~W~~~~~~p~~~~~~~~~~~~~~~v~~~G~lY~~~~~-----  322 (468)
                        ..+       .+|+++|+.      ..+++||+.+++|+.++.+|..       +..+.++.++|+||++++.     
T Consensus       110 --~~~-------~~lyv~GG~~~~~~~~~~~~~d~~~~~W~~~~~~p~~-------r~~~~~~~~~~~iyv~GG~~~~~~  173 (301)
T 2vpj_A          110 --TLG-------DMIYVSGGFDGSRRHTSMERYDPNIDQWSMLGDMQTA-------REGAGLVVASGVIYCLGGYDGLNI  173 (301)
T ss_dssp             --EET-------TEEEEECCBCSSCBCCEEEEEETTTTEEEEEEECSSC-------CBSCEEEEETTEEEEECCBCSSCB
T ss_pred             --EEC-------CEEEEEcccCCCcccceEEEEcCCCCeEEECCCCCCC-------cccceEEEECCEEEEECCCCCCcc
Confidence              223       478888873      2499999999999998776643       2345677789999999862     


Q ss_pred             CCeEEEEECCCCeEEEeecCCCCCCCCceEEEECCeEEEEEEEeeCCccEEEEEEEecCCCCeEEEEeeChhhhhcccCc
Q 012227          323 PEGIVSYNMVTGVWKQFIIPTPLHLNDHTLAECGGRIMLVGLLTKNAATCVCIWELQKMTLLWKEVDRMPNIWCLDFYGK  402 (468)
Q Consensus       323 ~~~i~~fD~~~~~w~~i~~P~p~~~~~~~l~~~~G~L~lv~~~~~~~~~~i~Vw~ld~~~~~W~~v~~mp~~~~~~~~~~  402 (468)
                      ...+..||+.+++|+.+ .++|..+....++..+|+||++++.... ...-++|.+|..+++|+++..+|.....     
T Consensus       174 ~~~~~~~d~~~~~W~~~-~~~p~~r~~~~~~~~~~~i~v~GG~~~~-~~~~~v~~yd~~~~~W~~~~~~p~~r~~-----  246 (301)
T 2vpj_A          174 LNSVEKYDPHTGHWTNV-TPMATKRSGAGVALLNDHIYVVGGFDGT-AHLSSVEAYNIRTDSWTTVTSMTTPRCY-----  246 (301)
T ss_dssp             CCCEEEEETTTTEEEEE-CCCSSCCBSCEEEEETTEEEEECCBCSS-SBCCCEEEEETTTTEEEEECCCSSCCBS-----
T ss_pred             cceEEEEeCCCCcEEeC-CCCCcccccceEEEECCEEEEEeCCCCC-cccceEEEEeCCCCcEEECCCCCCcccc-----
Confidence            24699999999999998 4666667777888999999999986432 1234788889989999999888755432     


Q ss_pred             ceEEEEEecCCEEEEEeeeCC---CCeEEEEECCCCcEEEccCCccCC
Q 012227          403 HVRMTCLGNKGLLMLSLRSRQ---MNRLVTYNVMSREWLKVPGCVVPR  447 (468)
Q Consensus       403 ~~~~~~~~~~~~I~~~~~~~~---~~~l~~YD~~t~~w~~v~~~~~~~  447 (468)
                         ..++..+|.||+..+...   ...+++||+++++|+.++.+|.++
T Consensus       247 ---~~~~~~~~~i~v~GG~~~~~~~~~v~~yd~~~~~W~~~~~~~~~r  291 (301)
T 2vpj_A          247 ---VGATVLRGRLYAIAGYDGNSLLSSIECYDPIIDSWEVVTSMGTQR  291 (301)
T ss_dssp             ---CEEEEETTEEEEECCBCSSSBEEEEEEEETTTTEEEEEEEEEEEE
T ss_pred             ---eeEEEECCEEEEEcCcCCCcccccEEEEcCCCCeEEEcCCCCccc
Confidence               223344788887543221   257899999999999998877665

>3ii7_A Kelch-like protein 7; protein-binding, kelch-repeat, structural genomics, structur genomics consortium, SGC, kelch repeat, nucleus, protein BI; 1.63A {Homo sapiens}

Probab=99.76  E-value=1e-16  Score=154.45  Aligned_cols=200  Identities=16%  Similarity=0.154  Sum_probs=150.3

Q ss_pred             CceEEEEcCCCCceEecCCCCcCCcceeEEEEEEcCCCCCCCeEEEEEEec-----CcEEEEeCCCCCccCCCCCCCCcc
Q 012227          224 HRNFYVCNPLTQSFKELPARSVKVWSRVAVGMTLNGNSTSSGYKILWVGCD-----GEYEIYDSLRNSWTRPGSMPSNIK  298 (468)
Q Consensus       224 ~~~~~V~NP~T~~~~~LP~~~~~~~~~~~~~~~~d~~~~~~~ykVv~v~~~-----~~v~vy~s~t~~W~~~~~~p~~~~  298 (468)
                      ...++++||.+++|..+++++..+....++  ..+       -+|+++|+.     ..+++||+.+++|+.++.+|..  
T Consensus        23 ~~~~~~~d~~~~~W~~~~~~p~~r~~~~~~--~~~-------~~lyv~GG~~~~~~~~~~~~d~~~~~W~~~~~~p~~--   91 (306)
T 3ii7_A           23 PQSCRYFNPKDYSWTDIRCPFEKRRDAACV--FWD-------NVVYILGGSQLFPIKRMDCYNVVKDSWYSKLGPPTP--   91 (306)
T ss_dssp             TTSEEEEETTTTEEEECCCCSCCCBSCEEE--EET-------TEEEEECCBSSSBCCEEEEEETTTTEEEEEECCSSC--
T ss_pred             CceEEEecCCCCCEecCCCCCcccceeEEE--EEC-------CEEEEEeCCCCCCcceEEEEeCCCCeEEECCCCCcc--
Confidence            357999999999999999887665443322  233       378888874     3499999999999998877654  


Q ss_pred             cCcccccccceEEECCEEEEEEcCC------CeEEEEECCCCeEEEeecCCCCCCCCceEEEECCeEEEEEEEeeCCc--
Q 012227          299 LPVSLNFRSQAVSVDGILYFMRSDP------EGIVSYNMVTGVWKQFIIPTPLHLNDHTLAECGGRIMLVGLLTKNAA--  370 (468)
Q Consensus       299 ~~~~~~~~~~~v~~~G~lY~~~~~~------~~i~~fD~~~~~w~~i~~P~p~~~~~~~l~~~~G~L~lv~~~~~~~~--  370 (468)
                           +..+.++.++|+||++++..      ..+..||+.+++|..+ .++|..+....++.++|+||++++......  
T Consensus        92 -----r~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~~d~~~~~W~~~-~~~p~~r~~~~~~~~~~~iyv~GG~~~~~~~~  165 (306)
T 3ii7_A           92 -----RDSLAACAAEGKIYTSGGSEVGNSALYLFECYDTRTESWHTK-PSMLTQRCSHGMVEANGLIYVCGGSLGNNVSG  165 (306)
T ss_dssp             -----CBSCEEEEETTEEEEECCBBTTBSCCCCEEEEETTTTEEEEE-CCCSSCCBSCEEEEETTEEEEECCEESCTTTC
T ss_pred             -----ccceeEEEECCEEEEECCCCCCCcEeeeEEEEeCCCCceEeC-CCCcCCcceeEEEEECCEEEEECCCCCCCCcc
Confidence                 23456778899999998632      4699999999999997 566666777788889999999998764321  


Q ss_pred             -cEEEEEEEecCCCCeEEEEeeChhhhhcccCcceEEEEEecCCEEEEEeeeC---CCCeEEEEECCCCcEEEccCCccC
Q 012227          371 -TCVCIWELQKMTLLWKEVDRMPNIWCLDFYGKHVRMTCLGNKGLLMLSLRSR---QMNRLVTYNVMSREWLKVPGCVVP  446 (468)
Q Consensus       371 -~~i~Vw~ld~~~~~W~~v~~mp~~~~~~~~~~~~~~~~~~~~~~I~~~~~~~---~~~~l~~YD~~t~~w~~v~~~~~~  446 (468)
                       ..-.+|.+|..+++|+++..||.....        ..++..++.||+..+..   ....+++||+++++|+.++.+|.+
T Consensus       166 ~~~~~~~~yd~~~~~W~~~~~~p~~r~~--------~~~~~~~~~i~v~GG~~~~~~~~~~~~yd~~~~~W~~~~~~p~~  237 (306)
T 3ii7_A          166 RVLNSCEVYDPATETWTELCPMIEARKN--------HGLVFVKDKIFAVGGQNGLGGLDNVEYYDIKLNEWKMVSPMPWK  237 (306)
T ss_dssp             EECCCEEEEETTTTEEEEECCCSSCCBS--------CEEEEETTEEEEECCEETTEEBCCEEEEETTTTEEEECCCCSCC
T ss_pred             cccceEEEeCCCCCeEEECCCccchhhc--------ceEEEECCEEEEEeCCCCCCCCceEEEeeCCCCcEEECCCCCCC
Confidence             144788889999999999888755432        22333478888753321   135799999999999999988877


Q ss_pred             CC
Q 012227          447 RG  448 (468)
Q Consensus       447 ~~  448 (468)
                      +.
T Consensus       238 r~  239 (306)
T 3ii7_A          238 GV  239 (306)
T ss_dssp             BS
T ss_pred             cc
Confidence            64

>2uvk_A YJHT; unknown function, hypothetical protein, sialic acid metabolism, kelch repeat, beta-propeller; HET: MSE; 1.50A {Escherichia coli}

Probab=99.74  E-value=1.5e-16  Score=156.65  Aligned_cols=216  Identities=13%  Similarity=0.066  Sum_probs=147.2

Q ss_pred             eeecCceEEEEEc-CCceEEEEcCC--CCceEecCCCC-cCCcceeEEEEEEcCCCCCCCeEEEEEEec-----------
Q 012227          210 VASAGGLVCFLDI-GHRNFYVCNPL--TQSFKELPARS-VKVWSRVAVGMTLNGNSTSSGYKILWVGCD-----------  274 (468)
Q Consensus       210 ~~s~~GLl~~~~~-~~~~~~V~NP~--T~~~~~LP~~~-~~~~~~~~~~~~~d~~~~~~~ykVv~v~~~-----------  274 (468)
                      .+..+|.|++.++ ....++++||.  +++|..+++++ ..+....++  .++       -+|+++|+.           
T Consensus        15 ~~~~~~~iyv~GG~~~~~~~~~d~~~~~~~W~~~~~~p~~~R~~~~~~--~~~-------~~lyv~GG~~~~~~~~~~~~   85 (357)
T 2uvk_A           15 GAIDNDTVYIGLGSAGTAWYKLDTQAKDKKWTALAAFPGGPRDQATSA--FID-------GNLYVFGGIGKNSEGLTQVF   85 (357)
T ss_dssp             EEEETTEEEEECGGGTTCEEEEETTSSSCCEEECCCCTTCCCBSCEEE--EET-------TEEEEECCEEECTTSCEEEC
T ss_pred             EEEECCEEEEEeCcCCCeEEEEccccCCCCeeECCCCCCCcCccceEE--EEC-------CEEEEEcCCCCCCCccceee
Confidence            3344777776654 33579999998  59999999876 454433322  233       378888875           


Q ss_pred             CcEEEEeCCCCCccCCCCCC-CCcccCcccccccceEEECCEEEEEEcCC------------------------------
Q 012227          275 GEYEIYDSLRNSWTRPGSMP-SNIKLPVSLNFRSQAVSVDGILYFMRSDP------------------------------  323 (468)
Q Consensus       275 ~~v~vy~s~t~~W~~~~~~p-~~~~~~~~~~~~~~~v~~~G~lY~~~~~~------------------------------  323 (468)
                      ..+++||+.+++|+.++.++ ..       +..+.++.++|+||++++..                              
T Consensus        86 ~~v~~yd~~~~~W~~~~~~~p~~-------r~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  158 (357)
T 2uvk_A           86 NDVHKYNPKTNSWVKLMSHAPMG-------MAGHVTFVHNGKAYVTGGVNQNIFNGYFEDLNEAGKDSTAIDKINAHYFD  158 (357)
T ss_dssp             CCEEEEETTTTEEEECSCCCSSC-------CSSEEEEEETTEEEEEECCCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHS
T ss_pred             ccEEEEeCCCCcEEECCCCCCcc-------cccceEEEECCEEEEEeCcCCCcCcccccchhhcCCcccchhhhhhhhcc
Confidence            23999999999999998776 22       23455677999999998632                              


Q ss_pred             ---------CeEEEEECCCCeEEEeecCCCCCC-CCceEEEECCeEEEEEEEeeCCccEEEEEEEec--CCCCeEEEEee
Q 012227          324 ---------EGIVSYNMVTGVWKQFIIPTPLHL-NDHTLAECGGRIMLVGLLTKNAATCVCIWELQK--MTLLWKEVDRM  391 (468)
Q Consensus       324 ---------~~i~~fD~~~~~w~~i~~P~p~~~-~~~~l~~~~G~L~lv~~~~~~~~~~i~Vw~ld~--~~~~W~~v~~m  391 (468)
                               ..+..||+.+++|+.+ .++|... ....++..+|+||++++.........++|.++.  .+++|+++..|
T Consensus       159 ~~~~~~~~~~~v~~yd~~~~~W~~~-~~~p~~~~~~~~~~~~~~~iyv~GG~~~~~~~~~~v~~~d~d~~~~~W~~~~~~  237 (357)
T 2uvk_A          159 KKAEDYFFNKFLLSFDPSTQQWSYA-GESPWYGTAGAAVVNKGDKTWLINGEAKPGLRTDAVFELDFTGNNLKWNKLAPV  237 (357)
T ss_dssp             SCGGGGCCCCEEEEEETTTTEEEEE-EECSSCCCBSCEEEEETTEEEEECCEEETTEECCCEEEEECC---CEEEECCCS
T ss_pred             ccccccCCcccEEEEeCCCCcEEEC-CCCCCCCcccccEEEECCEEEEEeeecCCCcccCceEEEEecCCCCcEEecCCC
Confidence                     5799999999999998 4555433 347788899999999987653333446777764  78999999888


Q ss_pred             ChhhhhcccCcceEEEEEecCCEEEEEeeeCC--------------------CCeEEEEECCCCcEEEccCCccCCC
Q 012227          392 PNIWCLDFYGKHVRMTCLGNKGLLMLSLRSRQ--------------------MNRLVTYNVMSREWLKVPGCVVPRG  448 (468)
Q Consensus       392 p~~~~~~~~~~~~~~~~~~~~~~I~~~~~~~~--------------------~~~l~~YD~~t~~w~~v~~~~~~~~  448 (468)
                      +.....  .    ...++..++.||+..+...                    ...+.+||+++++|+.++.+|.++.
T Consensus       238 ~~~~~~--~----~~~~~~~~~~iyv~GG~~~~~~~~~~~~g~~~~~~~~~~~~~~~~yd~~~~~W~~~~~~p~~r~  308 (357)
T 2uvk_A          238 SSPDGV--A----GGFAGISNDSLIFAGGAGFKGSRENYQNGKNYAHEGLKKSYSTDIHLWHNGKWDKSGELSQGRA  308 (357)
T ss_dssp             STTTCC--B----SCEEEEETTEEEEECCEECTTHHHHHHTTCSSTTTTCCCEECCEEEECC---CEEEEECSSCCB
T ss_pred             CCCccc--c----cceEEEECCEEEEEcCccccCCcccccccceeccccccceeeEEEEecCCCceeeCCCCCCCcc
Confidence            643221  0    1223445788887543211                    1357899999999999988887764

>2xn4_A Kelch-like protein 2; structural protein, cytoskeleton; 1.99A {Homo sapiens}

Probab=99.74  E-value=2.8e-16  Score=151.08  Aligned_cols=199  Identities=15%  Similarity=0.195  Sum_probs=148.8

Q ss_pred             ceEEEEcCCCCceEecCCCCcCCcceeEEEEEEcCCCCCCCeEEEEEEecC------cEEEEeCCCCCccCCCCCCCCcc
Q 012227          225 RNFYVCNPLTQSFKELPARSVKVWSRVAVGMTLNGNSTSSGYKILWVGCDG------EYEIYDSLRNSWTRPGSMPSNIK  298 (468)
Q Consensus       225 ~~~~V~NP~T~~~~~LP~~~~~~~~~~~~~~~~d~~~~~~~ykVv~v~~~~------~v~vy~s~t~~W~~~~~~p~~~~  298 (468)
                      ..++++||.+++|..+++++..+....++  ..+       .+|+++|+..      .+++||+.+++|+.++.+|..  
T Consensus        30 ~~~~~~d~~~~~W~~~~~~p~~r~~~~~~--~~~-------~~lyv~GG~~~~~~~~~~~~~d~~~~~W~~~~~~p~~--   98 (302)
T 2xn4_A           30 RSVECYDFKEERWHQVAELPSRRCRAGMV--YMA-------GLVFAVGGFNGSLRVRTVDSYDPVKDQWTSVANMRDR--   98 (302)
T ss_dssp             CCEEEEETTTTEEEEECCCSSCCBSCEEE--EET-------TEEEEESCBCSSSBCCCEEEEETTTTEEEEECCCSSC--
T ss_pred             CcEEEEcCcCCcEeEcccCCcccccceEE--EEC-------CEEEEEeCcCCCccccceEEECCCCCceeeCCCCCcc--
Confidence            46899999999999998876655433322  223       4788888742      499999999999999877654  


Q ss_pred             cCcccccccceEEECCEEEEEEcCC-----CeEEEEECCCCeEEEeecCCCCCCCCceEEEECCeEEEEEEEeeCC-ccE
Q 012227          299 LPVSLNFRSQAVSVDGILYFMRSDP-----EGIVSYNMVTGVWKQFIIPTPLHLNDHTLAECGGRIMLVGLLTKNA-ATC  372 (468)
Q Consensus       299 ~~~~~~~~~~~v~~~G~lY~~~~~~-----~~i~~fD~~~~~w~~i~~P~p~~~~~~~l~~~~G~L~lv~~~~~~~-~~~  372 (468)
                           +..+.++.++|++|++++..     ..+..||+.+++|..+ .++|..+....++.++|+||++++..... ...
T Consensus        99 -----r~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~d~~~~~W~~~-~~~p~~r~~~~~~~~~~~iyv~GG~~~~~~~~~  172 (302)
T 2xn4_A           99 -----RSTLGAAVLNGLLYAVGGFDGSTGLSSVEAYNIKSNEWFHV-APMNTRRSSVGVGVVGGLLYAVGGYDVASRQCL  172 (302)
T ss_dssp             -----CBSCEEEEETTEEEEEEEECSSCEEEEEEEEETTTTEEEEE-CCCSSCCBSCEEEEETTEEEEECCEETTTTEEC
T ss_pred             -----ccceEEEEECCEEEEEcCCCCCccCceEEEEeCCCCeEeec-CCCCCcccCceEEEECCEEEEEeCCCCCCCccc
Confidence                 23466777899999998622     3588999999999998 56676677778888999999999875422 123


Q ss_pred             EEEEEEecCCCCeEEEEeeChhhhhcccCcceEEEEEecCCEEEEEeeeC---CCCeEEEEECCCCcEEEccCCccCCC
Q 012227          373 VCIWELQKMTLLWKEVDRMPNIWCLDFYGKHVRMTCLGNKGLLMLSLRSR---QMNRLVTYNVMSREWLKVPGCVVPRG  448 (468)
Q Consensus       373 i~Vw~ld~~~~~W~~v~~mp~~~~~~~~~~~~~~~~~~~~~~I~~~~~~~---~~~~l~~YD~~t~~w~~v~~~~~~~~  448 (468)
                      -++|.+|..+++|+++..||.....        ..++..++.||+..+..   ....+++||+++++|+.++.++.++.
T Consensus       173 ~~~~~yd~~~~~W~~~~~~p~~r~~--------~~~~~~~~~iyv~GG~~~~~~~~~~~~yd~~~~~W~~~~~~~~~r~  243 (302)
T 2xn4_A          173 STVECYNATTNEWTYIAEMSTRRSG--------AGVGVLNNLLYAVGGHDGPLVRKSVEVYDPTTNAWRQVADMNMCRR  243 (302)
T ss_dssp             CCEEEEETTTTEEEEECCCSSCCBS--------CEEEEETTEEEEECCBSSSSBCCCEEEEETTTTEEEEECCCSSCCB
T ss_pred             cEEEEEeCCCCcEEECCCCcccccc--------ccEEEECCEEEEECCCCCCcccceEEEEeCCCCCEeeCCCCCCccc
Confidence            4688889999999999888755432        22334478888754322   13579999999999999998887654

>1zgk_A Kelch-like ECH-associated protein 1; beta-propeller, kelch repeat motif, protein binding; HET: MSE; 1.35A {Homo sapiens} SCOP: b.68.11.1 PDB: 2flu_X 1u6d_X 1x2j_A 1x2r_A 2dyh_A 2z32_A 3ade_A

Probab=99.74  E-value=2.5e-16  Score=152.08  Aligned_cols=198  Identities=15%  Similarity=0.163  Sum_probs=148.2

Q ss_pred             ceEEEEcCCCCceEecCCCCcCCcceeEEEEEEcCCCCCCCeEEEEEEec----------CcEEEEeCCCCCccCCCCCC
Q 012227          225 RNFYVCNPLTQSFKELPARSVKVWSRVAVGMTLNGNSTSSGYKILWVGCD----------GEYEIYDSLRNSWTRPGSMP  294 (468)
Q Consensus       225 ~~~~V~NP~T~~~~~LP~~~~~~~~~~~~~~~~d~~~~~~~ykVv~v~~~----------~~v~vy~s~t~~W~~~~~~p  294 (468)
                      ..++++||.+++|..+++++..+....++  ..+       -+|+++|+.          ..+++||+.+++|+.++.+|
T Consensus        39 ~~~~~~d~~~~~W~~~~~~p~~r~~~~~~--~~~-------~~lyv~GG~~~~~~~~~~~~~~~~~d~~~~~W~~~~~~p  109 (308)
T 1zgk_A           39 SYLEAYNPSNGTWLRLADLQVPRSGLAGC--VVG-------GLLYAVGGRNNSPDGNTDSSALDCYNPMTNQWSPCAPMS  109 (308)
T ss_dssp             CCEEEEETTTTEEEECCCCSSCCBSCEEE--EET-------TEEEEECCEEEETTEEEECCCEEEEETTTTEEEECCCCS
T ss_pred             ceEEEEcCCCCeEeECCCCCcccccceEE--EEC-------CEEEEECCCcCCCCCCeecceEEEECCCCCeEeECCCCC
Confidence            46999999999999998876655443222  223       478888775          24899999999999998776


Q ss_pred             CCcccCcccccccceEEECCEEEEEEcC-----CCeEEEEECCCCeEEEeecCCCCCCCCceEEEECCeEEEEEEEeeCC
Q 012227          295 SNIKLPVSLNFRSQAVSVDGILYFMRSD-----PEGIVSYNMVTGVWKQFIIPTPLHLNDHTLAECGGRIMLVGLLTKNA  369 (468)
Q Consensus       295 ~~~~~~~~~~~~~~~v~~~G~lY~~~~~-----~~~i~~fD~~~~~w~~i~~P~p~~~~~~~l~~~~G~L~lv~~~~~~~  369 (468)
                      ..       +....++.++|+||++++.     ...+..||+.+++|..+ .++|..+....++.++|+||++++.....
T Consensus       110 ~~-------r~~~~~~~~~~~iyv~GG~~~~~~~~~~~~yd~~~~~W~~~-~~~p~~r~~~~~~~~~~~iyv~GG~~~~~  181 (308)
T 1zgk_A          110 VP-------RNRIGVGVIDGHIYAVGGSHGCIHHNSVERYEPERDEWHLV-APMLTRRIGVGVAVLNRLLYAVGGFDGTN  181 (308)
T ss_dssp             SC-------CBTCEEEEETTEEEEECCEETTEECCCEEEEETTTTEEEEC-CCCSSCCBSCEEEEETTEEEEECCBCSSC
T ss_pred             cC-------ccccEEEEECCEEEEEcCCCCCcccccEEEECCCCCeEeEC-CCCCccccceEEEEECCEEEEEeCCCCCC
Confidence            54       2345677789999999862     24689999999999987 46666677778888999999999865322


Q ss_pred             ccEEEEEEEecCCCCeEEEEeeChhhhhcccCcceEEEEEecCCEEEEEeeeC---CCCeEEEEECCCCcEEEccCCccC
Q 012227          370 ATCVCIWELQKMTLLWKEVDRMPNIWCLDFYGKHVRMTCLGNKGLLMLSLRSR---QMNRLVTYNVMSREWLKVPGCVVP  446 (468)
Q Consensus       370 ~~~i~Vw~ld~~~~~W~~v~~mp~~~~~~~~~~~~~~~~~~~~~~I~~~~~~~---~~~~l~~YD~~t~~w~~v~~~~~~  446 (468)
                       ..-++|.+|..+++|+++..||.....        ..++..++.||+..+..   ....+++||+++++|+.++.+|.+
T Consensus       182 -~~~~~~~yd~~~~~W~~~~~~p~~r~~--------~~~~~~~~~iyv~GG~~~~~~~~~v~~yd~~~~~W~~~~~~p~~  252 (308)
T 1zgk_A          182 -RLNSAECYYPERNEWRMITAMNTIRSG--------AGVCVLHNCIYAAGGYDGQDQLNSVERYDVETETWTFVAPMKHR  252 (308)
T ss_dssp             -BCCCEEEEETTTTEEEECCCCSSCCBS--------CEEEEETTEEEEECCBCSSSBCCCEEEEETTTTEEEECCCCSSC
T ss_pred             -cCceEEEEeCCCCeEeeCCCCCCcccc--------ceEEEECCEEEEEeCCCCCCccceEEEEeCCCCcEEECCCCCCC
Confidence             234688889999999999888754321        22333478888754321   235799999999999999988877


Q ss_pred             CC
Q 012227          447 RG  448 (468)
Q Consensus       447 ~~  448 (468)
                      +.
T Consensus       253 r~  254 (308)
T 1zgk_A          253 RS  254 (308)
T ss_dssp             CB
T ss_pred             cc
Confidence            64

>4asc_A Kelch repeat and BTB domain-containing protein 5; protein binding, cytoskeleton; 1.78A {Homo sapiens}

Probab=99.73  E-value=2.1e-16  Score=152.96  Aligned_cols=198  Identities=14%  Similarity=0.217  Sum_probs=144.5

Q ss_pred             ceEEEEcCCCCceEecCCCC--cCCcceeEEEEEEcCCCCCCCeEEEEEEec-----C-------cEEEEeCCCCCccCC
Q 012227          225 RNFYVCNPLTQSFKELPARS--VKVWSRVAVGMTLNGNSTSSGYKILWVGCD-----G-------EYEIYDSLRNSWTRP  290 (468)
Q Consensus       225 ~~~~V~NP~T~~~~~LP~~~--~~~~~~~~~~~~~d~~~~~~~ykVv~v~~~-----~-------~v~vy~s~t~~W~~~  290 (468)
                      ..++++||.|++|.. ++++  ..+..   .++...      +-+|+++|+.     .       .+++||+.+++|+.+
T Consensus        13 ~~~~~yd~~~~~W~~-~~~~~p~~r~~---~~~~~~------~~~iyv~GG~~~~~~~~~~~~~~~~~~~d~~~~~W~~~   82 (315)
T 4asc_A           13 EGAVAYDPAANECYC-ASLSSQVPKNH---VSLVTK------ENQVFVAGGLFYNEDNKEDPMSAYFLQFDHLDSEWLGM   82 (315)
T ss_dssp             TEEEEEETTTTEEEE-EECCCCSCSSE---EEEECT------TCCEEEEEEEEECSSCSSSCEEEEEEEEETTTTEEEEC
T ss_pred             CceEEECCCCCeEec-CCCCCCCCccc---eEEEEE------CCEEEEEcCcccCCCCCccccccceEEecCCCCeEEEC
Confidence            479999999999986 3332  22222   222222      2478888873     1       288999999999999


Q ss_pred             CCCCCCcccCcccccccceEEECCEEEEEEcC--------CCeEEEEECCCCeEEEeecCCCCCCCCceEEEECCeEEEE
Q 012227          291 GSMPSNIKLPVSLNFRSQAVSVDGILYFMRSD--------PEGIVSYNMVTGVWKQFIIPTPLHLNDHTLAECGGRIMLV  362 (468)
Q Consensus       291 ~~~p~~~~~~~~~~~~~~~v~~~G~lY~~~~~--------~~~i~~fD~~~~~w~~i~~P~p~~~~~~~l~~~~G~L~lv  362 (468)
                      +.+|..       +..+.++.++|++|++++.        ...+..||+.+++|+.+ .++|..+..+.++.++|+||++
T Consensus        83 ~~~p~~-------r~~~~~~~~~~~lyv~GG~~~~~~~~~~~~~~~~d~~~~~W~~~-~~~p~~r~~~~~~~~~~~iyv~  154 (315)
T 4asc_A           83 PPLPSP-------RCLFGLGEALNSIYVVGGREIKDGERCLDSVMCYDRLSFKWGES-DPLPYVVYGHTVLSHMDLVYVI  154 (315)
T ss_dssp             CCBSSC-------EESCEEEEETTEEEEECCEESSTTCCBCCCEEEEETTTTEEEEC-CCCSSCCBSCEEEEETTEEEEE
T ss_pred             CCCCcc-------hhceeEEEECCEEEEEeCCcCCCCCcccceEEEECCCCCcEeEC-CCCCCcccceeEEEECCEEEEE
Confidence            877654       2346677889999999862        14589999999999987 4667777778888999999999


Q ss_pred             EEEeeCCccEEEEEEEecCCCCeEEEEeeChhhhhcccCcceEEEEEecCCEEEEEeeeCC---CCeEEEEECCCCcEEE
Q 012227          363 GLLTKNAATCVCIWELQKMTLLWKEVDRMPNIWCLDFYGKHVRMTCLGNKGLLMLSLRSRQ---MNRLVTYNVMSREWLK  439 (468)
Q Consensus       363 ~~~~~~~~~~i~Vw~ld~~~~~W~~v~~mp~~~~~~~~~~~~~~~~~~~~~~I~~~~~~~~---~~~l~~YD~~t~~w~~  439 (468)
                      ++........-++|.+|..+++|+++..||..+..        ..++..++.||+..+...   ...+++||+++++|+.
T Consensus       155 GG~~~~~~~~~~~~~yd~~~~~W~~~~~~p~~r~~--------~~~~~~~~~iyv~GG~~~~~~~~~~~~yd~~~~~W~~  226 (315)
T 4asc_A          155 GGKGSDRKCLNKMCVYDPKKFEWKELAPMQTARSL--------FGATVHDGRIIVAAGVTDTGLTSSAEVYSITDNKWAP  226 (315)
T ss_dssp             CCBCTTSCBCCCEEEEETTTTEEEECCCCSSCCBS--------CEEEEETTEEEEEEEECSSSEEEEEEEEETTTTEEEE
T ss_pred             eCCCCCCcccceEEEEeCCCCeEEECCCCCCchhc--------eEEEEECCEEEEEeccCCCCccceEEEEECCCCeEEE
Confidence            98743333345789999999999999888765332        223344788887543321   2468999999999999


Q ss_pred             ccCCccCCC
Q 012227          440 VPGCVVPRG  448 (468)
Q Consensus       440 v~~~~~~~~  448 (468)
                      ++.+|.++.
T Consensus       227 ~~~~p~~r~  235 (315)
T 4asc_A          227 FEAFPQERS  235 (315)
T ss_dssp             ECCCSSCCB
T ss_pred             CCCCCCccc
Confidence            998887764

>2vpj_A Kelch-like protein 12; adaptor protein, WNT signaling pathway, protein-binding, UBI degradation, UBL conjugation pathway, CUL3, kelch repeat; 1.85A {Homo sapiens}

Probab=99.72  E-value=7.1e-16  Score=148.09  Aligned_cols=198  Identities=16%  Similarity=0.176  Sum_probs=147.7

Q ss_pred             ceEEEEcCCCCceEecCCCCcCCcceeEEEEEEcCCCCCCCeEEEEEEecC------cEEEEeCCCCC---ccCCCCCCC
Q 012227          225 RNFYVCNPLTQSFKELPARSVKVWSRVAVGMTLNGNSTSSGYKILWVGCDG------EYEIYDSLRNS---WTRPGSMPS  295 (468)
Q Consensus       225 ~~~~V~NP~T~~~~~LP~~~~~~~~~~~~~~~~d~~~~~~~ykVv~v~~~~------~v~vy~s~t~~---W~~~~~~p~  295 (468)
                      ..++++||.|++|..+++++..+....+  ...+       -+|+++|+..      .+++||..+++   |+.++.+|.
T Consensus        31 ~~~~~~d~~~~~W~~~~~~p~~r~~~~~--~~~~-------~~l~v~GG~~~~~~~~~~~~~d~~~~~~~~W~~~~~~p~  101 (301)
T 2vpj_A           31 DVVEKYDPKTQEWSFLPSITRKRRYVAS--VSLH-------DRIYVIGGYDGRSRLSSVECLDYTADEDGVWYSVAPMNV  101 (301)
T ss_dssp             CCEEEEETTTTEEEECCCCSSCCBSCEE--EEET-------TEEEEECCBCSSCBCCCEEEEETTCCTTCCCEEECCCSS
T ss_pred             eEEEEEcCCCCeEEeCCCCChhhccccE--EEEC-------CEEEEEcCCCCCccCceEEEEECCCCCCCeeEECCCCCC
Confidence            4699999999999999987655443322  2233       3788888742      49999999999   999987765


Q ss_pred             CcccCcccccccceEEECCEEEEEEcC-----CCeEEEEECCCCeEEEeecCCCCCCCCceEEEECCeEEEEEEEeeCCc
Q 012227          296 NIKLPVSLNFRSQAVSVDGILYFMRSD-----PEGIVSYNMVTGVWKQFIIPTPLHLNDHTLAECGGRIMLVGLLTKNAA  370 (468)
Q Consensus       296 ~~~~~~~~~~~~~~v~~~G~lY~~~~~-----~~~i~~fD~~~~~w~~i~~P~p~~~~~~~l~~~~G~L~lv~~~~~~~~  370 (468)
                      .       +....++.++|++|++++.     ...+..||+.+++|..+ .++|..+....++.++|+||++++.... .
T Consensus       102 ~-------r~~~~~~~~~~~lyv~GG~~~~~~~~~~~~~d~~~~~W~~~-~~~p~~r~~~~~~~~~~~iyv~GG~~~~-~  172 (301)
T 2vpj_A          102 R-------RGLAGATTLGDMIYVSGGFDGSRRHTSMERYDPNIDQWSML-GDMQTAREGAGLVVASGVIYCLGGYDGL-N  172 (301)
T ss_dssp             C-------CBSCEEEEETTEEEEECCBCSSCBCCEEEEEETTTTEEEEE-EECSSCCBSCEEEEETTEEEEECCBCSS-C
T ss_pred             C-------ccceeEEEECCEEEEEcccCCCcccceEEEEcCCCCeEEEC-CCCCCCcccceEEEECCEEEEECCCCCC-c
Confidence            4       2345677789999999862     24699999999999998 4566666777888899999999886432 2


Q ss_pred             cEEEEEEEecCCCCeEEEEeeChhhhhcccCcceEEEEEecCCEEEEEeeeC---CCCeEEEEECCCCcEEEccCCccCC
Q 012227          371 TCVCIWELQKMTLLWKEVDRMPNIWCLDFYGKHVRMTCLGNKGLLMLSLRSR---QMNRLVTYNVMSREWLKVPGCVVPR  447 (468)
Q Consensus       371 ~~i~Vw~ld~~~~~W~~v~~mp~~~~~~~~~~~~~~~~~~~~~~I~~~~~~~---~~~~l~~YD~~t~~w~~v~~~~~~~  447 (468)
                      ..-++|.+|..+++|+++..||.....        ..++..++.||+..+..   ....++.||+++++|+.++.+|.++
T Consensus       173 ~~~~~~~~d~~~~~W~~~~~~p~~r~~--------~~~~~~~~~i~v~GG~~~~~~~~~v~~yd~~~~~W~~~~~~p~~r  244 (301)
T 2vpj_A          173 ILNSVEKYDPHTGHWTNVTPMATKRSG--------AGVALLNDHIYVVGGFDGTAHLSSVEAYNIRTDSWTTVTSMTTPR  244 (301)
T ss_dssp             BCCCEEEEETTTTEEEEECCCSSCCBS--------CEEEEETTEEEEECCBCSSSBCCCEEEEETTTTEEEEECCCSSCC
T ss_pred             ccceEEEEeCCCCcEEeCCCCCccccc--------ceEEEECCEEEEEeCCCCCcccceEEEEeCCCCcEEECCCCCCcc
Confidence            234688889999999999888755431        22334478888753322   1357999999999999999888776


Q ss_pred             C
Q 012227          448 G  448 (468)
Q Consensus       448 ~  448 (468)
                      .
T Consensus       245 ~  245 (301)
T 2vpj_A          245 C  245 (301)
T ss_dssp             B
T ss_pred             c
Confidence            4

>2woz_A Kelch repeat and BTB domain-containing protein 10; protein binding, invasion and metastasis, UBL conjugation pathway, UBL protein folding; 2.00A {Rattus norvegicus}

Probab=99.71  E-value=6.6e-16  Score=149.71  Aligned_cols=206  Identities=13%  Similarity=0.233  Sum_probs=145.9

Q ss_pred             eEEEEEcCCceEEEEcCCCCceEecCCC-CcCCcceeEEEEEEcCCCCCCCeEEEEEEec-----C-------cEEEEeC
Q 012227          216 LVCFLDIGHRNFYVCNPLTQSFKELPAR-SVKVWSRVAVGMTLNGNSTSSGYKILWVGCD-----G-------EYEIYDS  282 (468)
Q Consensus       216 Ll~~~~~~~~~~~V~NP~T~~~~~LP~~-~~~~~~~~~~~~~~d~~~~~~~ykVv~v~~~-----~-------~v~vy~s  282 (468)
                      .|++.++.  .+.++||.+++|...+.+ +.++..   .++...      +-+|+++|+.     .       .+++||+
T Consensus        17 ~i~~~GG~--~~~~yd~~~~~W~~~~~~~~~~r~~---~~~~~~------~~~lyv~GG~~~~~~~~~~~~~~~~~~~d~   85 (318)
T 2woz_A           17 LILLVNDT--AAVAYDPMENECYLTALAEQIPRNH---SSIVTQ------QNQVYVVGGLYVDEENKDQPLQSYFFQLDN   85 (318)
T ss_dssp             EEEEECSS--EEEEEETTTTEEEEEEECTTSCSSE---EEEECS------SSCEEEEESSCC-------CCCBEEEEEET
T ss_pred             hhhhcccc--ceEEECCCCCceecccCCccCCccc---eEEEEE------CCEEEEECCcccCccccCCCccccEEEEeC
Confidence            44444432  589999999999984432 122222   222221      2468888872     1       1789999


Q ss_pred             CCCCccCCCCCCCCcccCcccccccceEEECCEEEEEEcCC-------CeEEEEECCCCeEEEeecCCCCCCCCceEEEE
Q 012227          283 LRNSWTRPGSMPSNIKLPVSLNFRSQAVSVDGILYFMRSDP-------EGIVSYNMVTGVWKQFIIPTPLHLNDHTLAEC  355 (468)
Q Consensus       283 ~t~~W~~~~~~p~~~~~~~~~~~~~~~v~~~G~lY~~~~~~-------~~i~~fD~~~~~w~~i~~P~p~~~~~~~l~~~  355 (468)
                      .+++|+.++.+|..       +..+.++.++|+||++++..       ..+..||+.+++|+.+ .++|..+....++..
T Consensus        86 ~~~~W~~~~~~p~~-------r~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~~yd~~~~~W~~~-~~~p~~r~~~~~~~~  157 (318)
T 2woz_A           86 VSSEWVGLPPLPSA-------RCLFGLGEVDDKIYVVAGKDLQTEASLDSVLCYDPVAAKWSEV-KNLPIKVYGHNVISH  157 (318)
T ss_dssp             TTTEEEECSCBSSC-------BCSCEEEEETTEEEEEEEEBTTTCCEEEEEEEEETTTTEEEEE-CCCSSCEESCEEEEE
T ss_pred             CCCcEEECCCCCcc-------ccccceEEECCEEEEEcCccCCCCcccceEEEEeCCCCCEeEC-CCCCCcccccEEEEE
Confidence            99999999877654       23456777899999998631       3588999999999997 466666667778889


Q ss_pred             CCeEEEEEEEeeCCccEEEEEEEecCCCCeEEEEeeChhhhhcccCcceEEEEEecCCEEEEEeeeC---CCCeEEEEEC
Q 012227          356 GGRIMLVGLLTKNAATCVCIWELQKMTLLWKEVDRMPNIWCLDFYGKHVRMTCLGNKGLLMLSLRSR---QMNRLVTYNV  432 (468)
Q Consensus       356 ~G~L~lv~~~~~~~~~~i~Vw~ld~~~~~W~~v~~mp~~~~~~~~~~~~~~~~~~~~~~I~~~~~~~---~~~~l~~YD~  432 (468)
                      +|+||++++........-++|.+|..+++|+++..||.....        ..++..++.||+..+..   ....+++||+
T Consensus       158 ~~~iyv~GG~~~~~~~~~~~~~yd~~~~~W~~~~~~p~~r~~--------~~~~~~~~~iyv~GG~~~~~~~~~~~~yd~  229 (318)
T 2woz_A          158 NGMIYCLGGKTDDKKCTNRVFIYNPKKGDWKDLAPMKTPRSM--------FGVAIHKGKIVIAGGVTEDGLSASVEAFDL  229 (318)
T ss_dssp             TTEEEEECCEESSSCBCCCEEEEETTTTEEEEECCCSSCCBS--------CEEEEETTEEEEEEEEETTEEEEEEEEEET
T ss_pred             CCEEEEEcCCCCCCCccceEEEEcCCCCEEEECCCCCCCccc--------ceEEEECCEEEEEcCcCCCCccceEEEEEC
Confidence            999999998754333344788999999999999888754321        22334478888754322   1246899999


Q ss_pred             CCCcEEEccCCccCCC
Q 012227          433 MSREWLKVPGCVVPRG  448 (468)
Q Consensus       433 ~t~~w~~v~~~~~~~~  448 (468)
                      ++++|+.++.+|.++.
T Consensus       230 ~~~~W~~~~~~p~~r~  245 (318)
T 2woz_A          230 KTNKWEVMTEFPQERS  245 (318)
T ss_dssp             TTCCEEECCCCSSCCB
T ss_pred             CCCeEEECCCCCCccc
Confidence            9999999998887764

>2uvk_A YJHT; unknown function, hypothetical protein, sialic acid metabolism, kelch repeat, beta-propeller; HET: MSE; 1.50A {Escherichia coli}

Probab=99.69  E-value=3.6e-15  Score=146.81  Aligned_cols=249  Identities=12%  Similarity=0.070  Sum_probs=159.0

Q ss_pred             EEEEEeeCCCCCcceecCC--CCcccCCCCCCCC-CCcEEEEeeecCceEEEEEcC----------CceEEEEcCCCCce
Q 012227          171 WFYTITHENVNSGAMYDPS--LKKWHHPTISSLP-TKMIILPVASAGGLVCFLDIG----------HRNFYVCNPLTQSF  237 (468)
Q Consensus       171 ~l~~~~~~~~~~~~~~dp~--~~~w~~~~l~~~p-~~~~~~~~~s~~GLl~~~~~~----------~~~~~V~NP~T~~~  237 (468)
                      .+|++..........||+.  .++|..++  .+| ..+....++..+|.|++.++.          ...++++||.|++|
T Consensus        21 ~iyv~GG~~~~~~~~~d~~~~~~~W~~~~--~~p~~~R~~~~~~~~~~~lyv~GG~~~~~~~~~~~~~~v~~yd~~~~~W   98 (357)
T 2uvk_A           21 TVYIGLGSAGTAWYKLDTQAKDKKWTALA--AFPGGPRDQATSAFIDGNLYVFGGIGKNSEGLTQVFNDVHKYNPKTNSW   98 (357)
T ss_dssp             EEEEECGGGTTCEEEEETTSSSCCEEECC--CCTTCCCBSCEEEEETTEEEEECCEEECTTSCEEECCCEEEEETTTTEE
T ss_pred             EEEEEeCcCCCeEEEEccccCCCCeeECC--CCCCCcCccceEEEECCEEEEEcCCCCCCCccceeeccEEEEeCCCCcE
Confidence            3555544333445688987  48898653  233 221111144557777665433          24699999999999


Q ss_pred             EecCCCC-cCCcceeEEEEEEcCCCCCCCeEEEEEEec----------------------------------------Cc
Q 012227          238 KELPARS-VKVWSRVAVGMTLNGNSTSSGYKILWVGCD----------------------------------------GE  276 (468)
Q Consensus       238 ~~LP~~~-~~~~~~~~~~~~~d~~~~~~~ykVv~v~~~----------------------------------------~~  276 (468)
                      ..+++++ ..+....+  ...+       -+|+++|+.                                        ..
T Consensus        99 ~~~~~~~p~~r~~~~~--~~~~-------~~iyv~GG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  169 (357)
T 2uvk_A           99 VKLMSHAPMGMAGHVT--FVHN-------GKAYVTGGVNQNIFNGYFEDLNEAGKDSTAIDKINAHYFDKKAEDYFFNKF  169 (357)
T ss_dssp             EECSCCCSSCCSSEEE--EEET-------TEEEEEECCCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHSSCGGGGCCCCE
T ss_pred             EECCCCCCcccccceE--EEEC-------CEEEEEeCcCCCcCcccccchhhcCCcccchhhhhhhhccccccccCCccc
Confidence            9999875 44433322  2233       489999873                                        35


Q ss_pred             EEEEeCCCCCccCCCCCCCCcccCcccccccceEEECCEEEEEEcC------CCeEEEEEC--CCCeEEEeec-CCCCCC
Q 012227          277 YEIYDSLRNSWTRPGSMPSNIKLPVSLNFRSQAVSVDGILYFMRSD------PEGIVSYNM--VTGVWKQFII-PTPLHL  347 (468)
Q Consensus       277 v~vy~s~t~~W~~~~~~p~~~~~~~~~~~~~~~v~~~G~lY~~~~~------~~~i~~fD~--~~~~w~~i~~-P~p~~~  347 (468)
                      +++||+.+++|+.++.+|...      +....++.++++||++++.      ...+..||+  .+++|+.+.. |.+...
T Consensus       170 v~~yd~~~~~W~~~~~~p~~~------~~~~~~~~~~~~iyv~GG~~~~~~~~~~v~~~d~d~~~~~W~~~~~~~~~~~~  243 (357)
T 2uvk_A          170 LLSFDPSTQQWSYAGESPWYG------TAGAAVVNKGDKTWLINGEAKPGLRTDAVFELDFTGNNLKWNKLAPVSSPDGV  243 (357)
T ss_dssp             EEEEETTTTEEEEEEECSSCC------CBSCEEEEETTEEEEECCEEETTEECCCEEEEECC---CEEEECCCSSTTTCC
T ss_pred             EEEEeCCCCcEEECCCCCCCC------cccccEEEECCEEEEEeeecCCCcccCceEEEEecCCCCcEEecCCCCCCccc
Confidence            999999999999987766431      1235677789999999752      245788886  8999998732 223334


Q ss_pred             CCceEEEECCeEEEEEEEeeCC----------------ccEEEEEEEecCCCCeEEEEeeChhhhhcccCcceEEEEEec
Q 012227          348 NDHTLAECGGRIMLVGLLTKNA----------------ATCVCIWELQKMTLLWKEVDRMPNIWCLDFYGKHVRMTCLGN  411 (468)
Q Consensus       348 ~~~~l~~~~G~L~lv~~~~~~~----------------~~~i~Vw~ld~~~~~W~~v~~mp~~~~~~~~~~~~~~~~~~~  411 (468)
                      ....++..+|+||++++.....                .....+|.+|..+++|+++..||..+..        ..++..
T Consensus       244 ~~~~~~~~~~~iyv~GG~~~~~~~~~~~~g~~~~~~~~~~~~~~~~yd~~~~~W~~~~~~p~~r~~--------~~~~~~  315 (357)
T 2uvk_A          244 AGGFAGISNDSLIFAGGAGFKGSRENYQNGKNYAHEGLKKSYSTDIHLWHNGKWDKSGELSQGRAY--------GVSLPW  315 (357)
T ss_dssp             BSCEEEEETTEEEEECCEECTTHHHHHHTTCSSTTTTCCCEECCEEEECC---CEEEEECSSCCBS--------SEEEEE
T ss_pred             ccceEEEECCEEEEEcCccccCCcccccccceeccccccceeeEEEEecCCCceeeCCCCCCCccc--------ceeEEe
Confidence            4566888999999999875321                1234678889888999999998865432        223445


Q ss_pred             CCEEEEEeeeCC----CCeEEEEECCCCcEEEccCCc
Q 012227          412 KGLLMLSLRSRQ----MNRLVTYNVMSREWLKVPGCV  444 (468)
Q Consensus       412 ~~~I~~~~~~~~----~~~l~~YD~~t~~w~~v~~~~  444 (468)
                      ++.||+..+...    ...++.|++++++|.+....+
T Consensus       316 ~~~i~v~GG~~~~~~~~~~v~~l~~~~~~~~~~~~~~  352 (357)
T 2uvk_A          316 NNSLLIIGGETAGGKAVTDSVLITVKDNKVTVQNLEH  352 (357)
T ss_dssp             TTEEEEEEEECGGGCEEEEEEEEEC-CCSCEEEC---
T ss_pred             CCEEEEEeeeCCCCCEeeeEEEEEEcCcEeEeeeccc
Confidence            788887544321    246889999999999886544

>1k3i_A Galactose oxidase precursor; blade beta propeller, prosequence form, precursor of copper enzyme., oxidoreductase; 1.40A {Fusarium SP} SCOP: b.1.18.2 b.18.1.1 b.69.1.1 PDB: 1gof_A 1gog_A 1goh_A 2eie_A 2jkx_A 2vz1_A 2vz3_A 2eic_A 2eib_A 1t2x_A 2eid_A 2wq8_A

Probab=99.53  E-value=1.3e-13  Score=147.12  Aligned_cols=242  Identities=14%  Similarity=0.114  Sum_probs=156.5

Q ss_pred             cceecCCCCcccCC-CCCCCCCCcEEEEeeecCceEEEEEcC-----------CceEEEEcCCCCceEecCCCCcCCcce
Q 012227          183 GAMYDPSLKKWHHP-TISSLPTKMIILPVASAGGLVCFLDIG-----------HRNFYVCNPLTQSFKELPARSVKVWSR  250 (468)
Q Consensus       183 ~~~~dp~~~~w~~~-~l~~~p~~~~~~~~~s~~GLl~~~~~~-----------~~~~~V~NP~T~~~~~LP~~~~~~~~~  250 (468)
                      +..|||..++|..+ ++|..+.   ...+...+|.|++.++.           ...+.+|||.|++|..++.++..+...
T Consensus       168 ~~~~dp~~~~W~~~~~~P~~~~---~~av~~~~g~l~v~GG~~~~~~~~~~~~~~~~~~yd~~t~~w~~~~~~~~~~~~~  244 (656)
T 1k3i_A          168 YTAPQPGLGRWGPTIDLPIVPA---AAAIEPTSGRVLMWSSYRNDAFGGSPGGITLTSSWDPSTGIVSDRTVTVTKHDMF  244 (656)
T ss_dssp             CCCCCTTSCEEEEEEECSSCCS---EEEEETTTTEEEEEEECCCTTTCSCCCSEEEEEEECTTTCCBCCCEEEECSCCCS
T ss_pred             cccCCCCCCeeeeeccCCCCce---eEEEEecCCEEEEEecccccccccCCCCeEEEEEEeCCCCcEEeCcccCCCCCCc
Confidence            56899999999843 3333221   22122227777666431           125899999999999998764443332


Q ss_pred             e-EEEEEEcCCCCCCCeEEEEEEecC--cEEEEeCCCCCccCCCCCCCCcccCcccccccceEEE-CCEEEEEEcC-C--
Q 012227          251 V-AVGMTLNGNSTSSGYKILWVGCDG--EYEIYDSLRNSWTRPGSMPSNIKLPVSLNFRSQAVSV-DGILYFMRSD-P--  323 (468)
Q Consensus       251 ~-~~~~~~d~~~~~~~ykVv~v~~~~--~v~vy~s~t~~W~~~~~~p~~~~~~~~~~~~~~~v~~-~G~lY~~~~~-~--  323 (468)
                      + .+++..+       .+|+++|+..  .+++||+.+++|+.++.|+..       +..+.++.+ +|++|++++. .  
T Consensus       245 ~~~~~~~~~-------g~lyv~GG~~~~~v~~yd~~t~~W~~~~~~~~~-------R~~~s~~~~~dg~iyv~GG~~~~~  310 (656)
T 1k3i_A          245 CPGISMDGN-------GQIVVTGGNDAKKTSLYDSSSDSWIPGPDMQVA-------RGYQSSATMSDGRVFTIGGSWSGG  310 (656)
T ss_dssp             SCEEEECTT-------SCEEEECSSSTTCEEEEEGGGTEEEECCCCSSC-------CSSCEEEECTTSCEEEECCCCCSS
T ss_pred             cccccCCCC-------CCEEEeCCCCCCceEEecCcCCceeECCCCCcc-------ccccceEEecCCeEEEEeCcccCC
Confidence            2 1222223       5789888743  599999999999999877654       334556777 9999999872 1  


Q ss_pred             ---CeEEEEECCCCeEEEee----cCCCCCCC------------------------------------------------
Q 012227          324 ---EGIVSYNMVTGVWKQFI----IPTPLHLN------------------------------------------------  348 (468)
Q Consensus       324 ---~~i~~fD~~~~~w~~i~----~P~p~~~~------------------------------------------------  348 (468)
                         ..+..||+.+++|..++    .|++....                                                
T Consensus       311 ~~~~~~e~yd~~t~~W~~~~~~~~~p~~~~~~~~~~~~~~~iyv~Gg~~g~~~~~~~~~~v~~yd~~~~~w~~~~~~~~~  390 (656)
T 1k3i_A          311 VFEKNGEVYSPSSKTWTSLPNAKVNPMLTADKQGLYRSDNHAWLFGWKKGSVFQAGPSTAMNWYYTSGSGDVKSAGKRQS  390 (656)
T ss_dssp             SCCCCEEEEETTTTEEEEETTSCSGGGCCCCTTGGGTTTCSCCEEECGGGCEEECCSSSEEEEEECSTTCEEEEEEECEE
T ss_pred             cccccceEeCCCCCcceeCCCccccccccccccceeecCCceEEEECCCCcEEEecCccceeeeecCCcceeecCCcccc
Confidence               46899999999999862    23221100                                                


Q ss_pred             --------CceEEE----ECCeEEEEEEEeeC-----CccEEEEEEEecCCCCeEEEE--eeChhhhhcccCcceEEEEE
Q 012227          349 --------DHTLAE----CGGRIMLVGLLTKN-----AATCVCIWELQKMTLLWKEVD--RMPNIWCLDFYGKHVRMTCL  409 (468)
Q Consensus       349 --------~~~l~~----~~G~L~lv~~~~~~-----~~~~i~Vw~ld~~~~~W~~v~--~mp~~~~~~~~~~~~~~~~~  409 (468)
                              ....++    .+|+||++++....     ......|+.+|..++.|.++.  .||..+..       .-.++
T Consensus       391 ~~~~~~~~~~~~av~~~~~~~~i~v~GG~~~~~~~~~~~~~~~v~~yd~~~~~W~~~~~~~mp~~R~~-------~~~~~  463 (656)
T 1k3i_A          391 NRGVAPDAMCGNAVMYDAVKGKILTFGGSPDYQDSDATTNAHIITLGEPGTSPNTVFASNGLYFARTF-------HTSVV  463 (656)
T ss_dssp             TTEECCCCBTCEEEEEETTTTEEEEECCBSSSSSSBCCCCEEEEECCSTTSCCEEEECTTCCSSCCBS-------CEEEE
T ss_pred             ccccCCCCCCCceEeccCCCCeEEEEeCCCCCCCCCcCCcceEEEcCCCCCCCeeEEccCCCCCCccc-------CCeEE
Confidence                    011222    38999999875321     112235677788889999987  77754321       01223


Q ss_pred             ecCCEEEEEeeeC---------CCCeEEEEECCCCcEEEccCCccCCC
Q 012227          410 GNKGLLMLSLRSR---------QMNRLVTYNVMSREWLKVPGCVVPRG  448 (468)
Q Consensus       410 ~~~~~I~~~~~~~---------~~~~l~~YD~~t~~w~~v~~~~~~~~  448 (468)
                      ..+|.||+..+..         ....+++||+++++|+.++.++.++.
T Consensus       464 l~~g~i~v~GG~~~~~~~~~~~~~~~v~~ydp~t~~W~~~~~~~~~R~  511 (656)
T 1k3i_A          464 LPDGSTFITGGQRRGIPFEDSTPVFTPEIYVPEQDTFYKQNPNSIVRV  511 (656)
T ss_dssp             CTTSCEEEECCBSBCCTTCCCSBCCCCEEEEGGGTEEEECCCCSSCCC
T ss_pred             CCCCCEEEECCcccCcCcCCCCcccceEEEcCCCCceeecCCCCCccc
Confidence            3367787754321         12568999999999999998887764

>2zwa_A Leucine carboxyl methyltransferase 2; HET: SAH CIT; 1.70A {Saccharomyces cerevisiae} PDB: 2zw9_A* 2zzk_A*

Probab=99.51  E-value=4.5e-13  Score=143.41  Aligned_cols=207  Identities=13%  Similarity=0.094  Sum_probs=139.4

Q ss_pred             cCceEEEEEcC----CceEEEEcCCCCceEecC-C-----CCcCCcceeEEEEEEcCCCCCCCeEEEEEEecC-------
Q 012227          213 AGGLVCFLDIG----HRNFYVCNPLTQSFKELP-A-----RSVKVWSRVAVGMTLNGNSTSSGYKILWVGCDG-------  275 (468)
Q Consensus       213 ~~GLl~~~~~~----~~~~~V~NP~T~~~~~LP-~-----~~~~~~~~~~~~~~~d~~~~~~~ykVv~v~~~~-------  275 (468)
                      .++.|++.++.    ...++++||.+++|..++ +     ++..+..+.  ...+.     .+.+|+++||..       
T Consensus       396 ~~~~iyv~GG~~~~~~~~v~~yd~~~~~W~~~~~~~p~~~~p~~R~~hs--~~~~~-----~~~~lyv~GG~~~~~~~~~  468 (695)
T 2zwa_A          396 AGNDVFYMGGSNPYRVNEILQLSIHYDKIDMKNIEVSSSEVPVARMCHT--FTTIS-----RNNQLLLIGGRKAPHQGLS  468 (695)
T ss_dssp             CSSCEEEECCBSSSBCCCEEEEEECSSCEEEEECCCCCSCCCCCCBSCE--EEEET-----TTTEEEEECCBSSTTCBCC
T ss_pred             ECCEEEEECCCCCCCcCcEEEEECCCCeEEEeccCCCCCCCCccccceE--EEEEc-----cCCEEEEEcCCCCCCCccc
Confidence            56666665542    246999999999999988 5     233333322  22231     014789898742       


Q ss_pred             cEEEEeCCCCCccCCCCCCCCcccCcccccccceEEE-CCEEEEEEcCC--CeEEEEECCCCeEEEeec--CCCCCCCCc
Q 012227          276 EYEIYDSLRNSWTRPGSMPSNIKLPVSLNFRSQAVSV-DGILYFMRSDP--EGIVSYNMVTGVWKQFII--PTPLHLNDH  350 (468)
Q Consensus       276 ~v~vy~s~t~~W~~~~~~p~~~~~~~~~~~~~~~v~~-~G~lY~~~~~~--~~i~~fD~~~~~w~~i~~--P~p~~~~~~  350 (468)
                      .+++||..+++|+.++.+|..       +..+.++.+ +|+||++++..  ..+..||+.+++|..+..  ++|..+...
T Consensus       469 dv~~yd~~t~~W~~~~~~p~~-------R~~h~~~~~~~~~iyv~GG~~~~~~v~~yd~~t~~W~~~~~~g~~p~~r~~~  541 (695)
T 2zwa_A          469 DNWIFDMKTREWSMIKSLSHT-------RFRHSACSLPDGNVLILGGVTEGPAMLLYNVTEEIFKDVTPKDEFFQNSLVS  541 (695)
T ss_dssp             CCEEEETTTTEEEECCCCSBC-------CBSCEEEECTTSCEEEECCBCSSCSEEEEETTTTEEEECCCSSGGGGSCCBS
T ss_pred             cEEEEeCCCCcEEECCCCCCC-------cccceEEEEcCCEEEEECCCCCCCCEEEEECCCCceEEccCCCCCCCcccce
Confidence            389999999999999887754       334556665 99999998632  269999999999998742  144445555


Q ss_pred             eEEEEC---CeEEEEEEEeeCC-ccEEEEEEEecCCCC------eEEEEeeCh-hhhhcccCcceEEEEEecC-CEEEEE
Q 012227          351 TLAECG---GRIMLVGLLTKNA-ATCVCIWELQKMTLL------WKEVDRMPN-IWCLDFYGKHVRMTCLGNK-GLLMLS  418 (468)
Q Consensus       351 ~l~~~~---G~L~lv~~~~~~~-~~~i~Vw~ld~~~~~------W~~v~~mp~-~~~~~~~~~~~~~~~~~~~-~~I~~~  418 (468)
                      ..++++   |+||++++...+. ...-++|.++..++.      |+++..+|. ....        ..++..+ |.||+.
T Consensus       542 ~a~v~~~~~~~iyv~GG~~~~~~~~~~~v~~yd~~~~~w~~~~~W~~~~~~p~~~R~~--------~~~~~~~~~~iyv~  613 (695)
T 2zwa_A          542 AGLEFDPVSKQGIILGGGFMDQTTVSDKAIIFKYDAENATEPITVIKKLQHPLFQRYG--------SQIKYITPRKLLIV  613 (695)
T ss_dssp             CEEEEETTTTEEEEECCBCTTSSCBCCEEEEEEECTTCSSCCEEEEEEEECGGGCCBS--------CEEEEEETTEEEEE
T ss_pred             eEEEEeCCCCEEEEECCcCCCCCeeeCcEEEEEccCCccccceEEEEcCCCCCCCccc--------ceEEEeCCCEEEEE
Confidence            656656   8999999864322 233478888888787      899887642 1111        1223334 888875


Q ss_pred             eeeC------CCCeEEEEECCCCcEEEcc
Q 012227          419 LRSR------QMNRLVTYNVMSREWLKVP  441 (468)
Q Consensus       419 ~~~~------~~~~l~~YD~~t~~w~~v~  441 (468)
                      .+..      ....+++||+++++|+.++
T Consensus       614 GG~~~~~~~~~~~~v~~yd~~t~~W~~~~  642 (695)
T 2zwa_A          614 GGTSPSGLFDRTNSIISLDPLSETLTSIP  642 (695)
T ss_dssp             CCBCSSCCCCTTTSEEEEETTTTEEEECC
T ss_pred             CCccCCCCCCCCCeEEEEECCCCeEEEee
Confidence            4321      2457999999999999764

>2zwa_A Leucine carboxyl methyltransferase 2; HET: SAH CIT; 1.70A {Saccharomyces cerevisiae} PDB: 2zw9_A* 2zzk_A*

Probab=99.33  E-value=1.2e-11  Score=132.34  Aligned_cols=196  Identities=8%  Similarity=0.091  Sum_probs=132.2

Q ss_pred             cceecCCCCcccCCCCC----CCCCCcEEEEeeec--CceEEEEEcC------CceEEEEcCCCCceEecCCCCcCCcce
Q 012227          183 GAMYDPSLKKWHHPTIS----SLPTKMIILPVASA--GGLVCFLDIG------HRNFYVCNPLTQSFKELPARSVKVWSR  250 (468)
Q Consensus       183 ~~~~dp~~~~w~~~~l~----~~p~~~~~~~~~s~--~GLl~~~~~~------~~~~~V~NP~T~~~~~LP~~~~~~~~~  250 (468)
                      ...||+.+++|..++++    .+|..+.....+..  +|-|++.++.      ...++++||.|++|..+++++..+..+
T Consensus       414 v~~yd~~~~~W~~~~~~~p~~~~p~~R~~hs~~~~~~~~~lyv~GG~~~~~~~~~dv~~yd~~t~~W~~~~~~p~~R~~h  493 (695)
T 2zwa_A          414 ILQLSIHYDKIDMKNIEVSSSEVPVARMCHTFTTISRNNQLLLIGGRKAPHQGLSDNWIFDMKTREWSMIKSLSHTRFRH  493 (695)
T ss_dssp             EEEEEECSSCEEEEECCCCCSCCCCCCBSCEEEEETTTTEEEEECCBSSTTCBCCCCEEEETTTTEEEECCCCSBCCBSC
T ss_pred             EEEEECCCCeEEEeccCCCCCCCCccccceEEEEEccCCEEEEEcCCCCCCCccccEEEEeCCCCcEEECCCCCCCcccc
Confidence            56799999999876522    23332211114444  7777666532      246899999999999999887665544


Q ss_pred             eEEEEEEcCCCCCCCeEEEEEEecC---cEEEEeCCCCCccCCCC---CCCCcccCcccccccceEEEC---CEEEEEEc
Q 012227          251 VAVGMTLNGNSTSSGYKILWVGCDG---EYEIYDSLRNSWTRPGS---MPSNIKLPVSLNFRSQAVSVD---GILYFMRS  321 (468)
Q Consensus       251 ~~~~~~~d~~~~~~~ykVv~v~~~~---~v~vy~s~t~~W~~~~~---~p~~~~~~~~~~~~~~~v~~~---G~lY~~~~  321 (468)
                      .++.+ .+       .+|+++|+..   .+++||+.+++|+.+..   +|..       +..+.+++++   |+||++++
T Consensus       494 ~~~~~-~~-------~~iyv~GG~~~~~~v~~yd~~t~~W~~~~~~g~~p~~-------r~~~~a~v~~~~~~~iyv~GG  558 (695)
T 2zwa_A          494 SACSL-PD-------GNVLILGGVTEGPAMLLYNVTEEIFKDVTPKDEFFQN-------SLVSAGLEFDPVSKQGIILGG  558 (695)
T ss_dssp             EEEEC-TT-------SCEEEECCBCSSCSEEEEETTTTEEEECCCSSGGGGS-------CCBSCEEEEETTTTEEEEECC
T ss_pred             eEEEE-cC-------CEEEEECCCCCCCCEEEEECCCCceEEccCCCCCCCc-------ccceeEEEEeCCCCEEEEECC
Confidence            32221 12       4788888753   59999999999998875   3322       2344556667   89999986


Q ss_pred             C-------CCeEEEEECCCCe------EEEeecCCCCCCCCceEEEEC-CeEEEEEEEeeCC--ccEEEEEEEecCCCCe
Q 012227          322 D-------PEGIVSYNMVTGV------WKQFIIPTPLHLNDHTLAECG-GRIMLVGLLTKNA--ATCVCIWELQKMTLLW  385 (468)
Q Consensus       322 ~-------~~~i~~fD~~~~~------w~~i~~P~p~~~~~~~l~~~~-G~L~lv~~~~~~~--~~~i~Vw~ld~~~~~W  385 (468)
                      .       ...+..||+.+++      |..+...++..+....++..+ |+||++++.....  ...-+||.+|..+++|
T Consensus       559 ~~~~~~~~~~~v~~yd~~~~~w~~~~~W~~~~~~p~~~R~~~~~~~~~~~~iyv~GG~~~~~~~~~~~~v~~yd~~t~~W  638 (695)
T 2zwa_A          559 GFMDQTTVSDKAIIFKYDAENATEPITVIKKLQHPLFQRYGSQIKYITPRKLLIVGGTSPSGLFDRTNSIISLDPLSETL  638 (695)
T ss_dssp             BCTTSSCBCCEEEEEEECTTCSSCCEEEEEEEECGGGCCBSCEEEEEETTEEEEECCBCSSCCCCTTTSEEEEETTTTEE
T ss_pred             cCCCCCeeeCcEEEEEccCCccccceEEEEcCCCCCCCcccceEEEeCCCEEEEECCccCCCCCCCCCeEEEEECCCCeE
Confidence            3       2469999999999      888743123445567778888 9999999864321  1233688889999999


Q ss_pred             EEEEeeChh
Q 012227          386 KEVDRMPNI  394 (468)
Q Consensus       386 ~~v~~mp~~  394 (468)
                      +.+ .+|..
T Consensus       639 ~~~-~~p~~  646 (695)
T 2zwa_A          639 TSI-PISRR  646 (695)
T ss_dssp             EEC-CCCHH
T ss_pred             EEe-ecccc
Confidence            943 45543

>1k3i_A Galactose oxidase precursor; blade beta propeller, prosequence form, precursor of copper enzyme., oxidoreductase; 1.40A {Fusarium SP} SCOP: b.1.18.2 b.18.1.1 b.69.1.1 PDB: 1gof_A 1gog_A 1goh_A 2eie_A 2jkx_A 2vz1_A 2vz3_A 2eic_A 2eib_A 1t2x_A 2eid_A 2wq8_A

Probab=99.21  E-value=7e-11  Score=125.86  Aligned_cols=147  Identities=10%  Similarity=0.049  Sum_probs=102.9

Q ss_pred             EEEEcCCCCceEecCCCCcCCcceeEEEEEEcCCCCCCCeEEEEEEecC------------cEEEEeCCCCCccCCCCCC
Q 012227          227 FYVCNPLTQSFKELPARSVKVWSRVAVGMTLNGNSTSSGYKILWVGCDG------------EYEIYDSLRNSWTRPGSMP  294 (468)
Q Consensus       227 ~~V~NP~T~~~~~LP~~~~~~~~~~~~~~~~d~~~~~~~ykVv~v~~~~------------~v~vy~s~t~~W~~~~~~p  294 (468)
                      +..+||.+++|..+++++..  . ..+++..      .+.+|+++|+..            .+.+||+.+++|+.+..++
T Consensus       168 ~~~~dp~~~~W~~~~~~P~~--~-~~~av~~------~~g~l~v~GG~~~~~~~~~~~~~~~~~~yd~~t~~w~~~~~~~  238 (656)
T 1k3i_A          168 YTAPQPGLGRWGPTIDLPIV--P-AAAAIEP------TSGRVLMWSSYRNDAFGGSPGGITLTSSWDPSTGIVSDRTVTV  238 (656)
T ss_dssp             CCCCCTTSCEEEEEEECSSC--C-SEEEEET------TTTEEEEEEECCCTTTCSCCCSEEEEEEECTTTCCBCCCEEEE
T ss_pred             cccCCCCCCeeeeeccCCCC--c-eeEEEEe------cCCEEEEEecccccccccCCCCeEEEEEEeCCCCcEEeCcccC
Confidence            55679999999988776441  1 2233332      125888887631            3899999999999887665


Q ss_pred             CCcccCcccccccceE-EECCEEEEEEc-CCCeEEEEECCCCeEEEeecCCCCCCCCceEEEE-CCeEEEEEEEeeCCcc
Q 012227          295 SNIKLPVSLNFRSQAV-SVDGILYFMRS-DPEGIVSYNMVTGVWKQFIIPTPLHLNDHTLAEC-GGRIMLVGLLTKNAAT  371 (468)
Q Consensus       295 ~~~~~~~~~~~~~~~v-~~~G~lY~~~~-~~~~i~~fD~~~~~w~~i~~P~p~~~~~~~l~~~-~G~L~lv~~~~~~~~~  371 (468)
                      ....     .+....+ ..+|+||++++ ....+..||+.+++|..+ .+++..+..+.++.+ +|+||++++.......
T Consensus       239 ~~~~-----~~~~~~~~~~~g~lyv~GG~~~~~v~~yd~~t~~W~~~-~~~~~~R~~~s~~~~~dg~iyv~GG~~~~~~~  312 (656)
T 1k3i_A          239 TKHD-----MFCPGISMDGNGQIVVTGGNDAKKTSLYDSSSDSWIPG-PDMQVARGYQSSATMSDGRVFTIGGSWSGGVF  312 (656)
T ss_dssp             CSCC-----CSSCEEEECTTSCEEEECSSSTTCEEEEEGGGTEEEEC-CCCSSCCSSCEEEECTTSCEEEECCCCCSSSC
T ss_pred             CCCC-----CccccccCCCCCCEEEeCCCCCCceEEecCcCCceeEC-CCCCccccccceEEecCCeEEEEeCcccCCcc
Confidence            4321     1122223 35899999987 334799999999999987 467777777788888 9999999984322222


Q ss_pred             EEEEEEEecCCCCeEEE
Q 012227          372 CVCIWELQKMTLLWKEV  388 (468)
Q Consensus       372 ~i~Vw~ld~~~~~W~~v  388 (468)
                      .-.++.+|..+++|+.+
T Consensus       313 ~~~~e~yd~~t~~W~~~  329 (656)
T 1k3i_A          313 EKNGEVYSPSSKTWTSL  329 (656)
T ss_dssp             CCCEEEEETTTTEEEEE
T ss_pred             cccceEeCCCCCcceeC
Confidence            23566778888999997

>1fs1_A SKP2 F-BOX, cyclin A/CDK2-associated P19; F-BOX, LRR, leucine-rich repeat, SCF, ubiquitin, ubiquitin protein ligase; 1.80A {Homo sapiens} SCOP: a.158.1.1 PDB: 1ldk_E

Probab=98.96  E-value=2.9e-10  Score=78.59  Aligned_cols=44  Identities=23%  Similarity=0.613  Sum_probs=39.0

Q ss_pred             hhhccChHHHHHHHHhcCChhhHHHHhhcccchhhhccCcchhh
Q 012227          117 EIWKEFPEDLYEAVIARLPIATFFRFRSVCQKWNSLLKSHSFSQ  160 (468)
Q Consensus       117 ~~w~~LP~DLl~~IL~RLp~~~l~r~r~VCK~Wr~li~s~~F~~  160 (468)
                      ..|..||+|++.+||.+||..++.++++|||+|+.++.++.|-+
T Consensus         7 ~~~~~LP~eil~~I~~~L~~~dl~~~~~Vck~w~~~~~~~~lW~   50 (53)
T 1fs1_A            7 VSWDSLPDELLLGIFSCLCLPELLKVSGVCKRWYRLASDESLWQ   50 (53)
T ss_dssp             --CCSSCHHHHHHHHTTSCGGGHHHHHTTCHHHHHHHTCGGGC-
T ss_pred             CCHHHCCHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCChHHHH
Confidence            45889999999999999999999999999999999999887654

>3v7d_B Cell division control protein 4; WD 40 domain, phospho-peptide complex, E3 ubiquitin ligase, cell cycle, phospho binding protein, phosphorylation; HET: SEP; 2.31A {Saccharomyces cerevisiae} PDB: 1nex_B* 3mks_B*

Probab=98.70  E-value=5.8e-06  Score=83.24  Aligned_cols=42  Identities=17%  Similarity=0.414  Sum_probs=38.0

Q ss_pred             hhhccChHHHHHHHHhcCChhhHHHHhhcccchhhhccC-cch
Q 012227          117 EIWKEFPEDLYEAVIARLPIATFFRFRSVCQKWNSLLKS-HSF  158 (468)
Q Consensus       117 ~~w~~LP~DLl~~IL~RLp~~~l~r~r~VCK~Wr~li~s-~~F  158 (468)
                      ..+..||+||+..||+.|+.++|.+++.|||+|+.++.+ +.+
T Consensus        13 d~~~~lp~~~~~~i~~~l~~~~l~~~~~v~~~w~~~~~~~~~~   55 (464)
T 3v7d_B           13 DLITSLPFEISLKIFNYLQFEDIINSLGVSQNWNKIIRKSTSL   55 (464)
T ss_dssp             CHHHHSCHHHHHHHHTTSCHHHHHHHHTTCHHHHHHHTTCHHH
T ss_pred             CChHHCCHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHcCCHHH
Confidence            346889999999999999999999999999999999987 543

>2e31_A FBS1, F-box only protein 2; ubiquitin, SCF, ubiquitin ligase, FBS1; 2.40A {Mus musculus} PDB: 2e32_A

Probab=98.69  E-value=4.7e-09  Score=98.56  Aligned_cols=52  Identities=31%  Similarity=0.476  Sum_probs=45.1

Q ss_pred             hhchhhhccChHHHHHHHHhcCChhhHH-HHhhcccchhhhccCcchhhhhhc
Q 012227          113 AMEQEIWKEFPEDLYEAVIARLPIATFF-RFRSVCQKWNSLLKSHSFSQHCAQ  164 (468)
Q Consensus       113 ~~~~~~w~~LP~DLl~~IL~RLp~~~l~-r~r~VCK~Wr~li~s~~F~~~~~~  164 (468)
                      .|+...+..||+|||.+||+|||..+|+ ||++|||+||++++++.|.+.+..
T Consensus        45 ~~~~~~~~~LP~ell~~Il~~Lp~~~L~~r~~~VCk~Wr~l~~~~~~w~~~~~   97 (297)
T 2e31_A           45 AEAVEYLAELPEPLLLRVLAELPATELVQACRLVCLRWKELVDGAPLWLLKCQ   97 (297)
T ss_dssp             --CCCCTTSSCHHHHHHHHHTSCHHHHHHTGGGTCHHHHHHHTSHHHHHHHHH
T ss_pred             cccccChhhCCHHHHHHHHHcCCHHHHHHHHHHHhHHHHHHhcChHHHHHHhh
Confidence            3444567899999999999999999999 999999999999999999886543

>2ovr_B FBW7, F-BOX/WD repeat protein 7, F-box PROT; WD40 domains, double phosphorylation, transcription-C complex; HET: TPO; 2.50A {Homo sapiens} SCOP: a.158.1.1 b.69.4.1 PDB: 2ovp_B* 2ovq_B*

Probab=98.67  E-value=2.1e-06  Score=86.19  Aligned_cols=233  Identities=12%  Similarity=0.161  Sum_probs=118.9

Q ss_pred             hhccChHHHHHHHHhcCChhhHHHHhhcccchhhhccCcchhhhh-hcCCCCCCEEEEEeeC-CCC----Cc-ceec---
Q 012227          118 IWKEFPEDLYEAVIARLPIATFFRFRSVCQKWNSLLKSHSFSQHC-AQVPQGIPWFYTITHE-NVN----SG-AMYD---  187 (468)
Q Consensus       118 ~w~~LP~DLl~~IL~RLp~~~l~r~r~VCK~Wr~li~s~~F~~~~-~~~~~~~p~l~~~~~~-~~~----~~-~~~d---  187 (468)
                      .+..||+||+..||..|+..+|.+++.|||+|+.++.++.+-+.. .......|........ ...    .+ ..|-   
T Consensus        18 ~~~~lp~e~~~~i~~~l~~~~l~~~~~v~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~wk~~~~~~~   97 (445)
T 2ovr_B           18 FISLLPKELALYVLSFLEPKDLLQAAQTCRYWRILAEDNLLWREKCKEEGIDEPLHIKRRKVIKPGFIHSPWKSAYIRQH   97 (445)
T ss_dssp             TTTSSCHHHHHHHHTTSCHHHHHHHTTSCHHHHHHHTCSHHHHHHHTTTTCCSCCCCCC--CCSSCCCCCHHHHHHHHHH
T ss_pred             hhHHCCHHHHHHHHHhCCHHHHHHHHHHhHHHHhhcCchhHhhhheeecccccccccccceecCCCccCCcHHHHHhhhh
Confidence            367899999999999999999999999999999999998777642 2221111100000000 000    00 0000   


Q ss_pred             CCCCcccCCCCC---CC---CCCcEEEEeeecCceEEEEEcCCceEEEEcCCCCceEe-cCCCCcCCcceeEEEEEEcCC
Q 012227          188 PSLKKWHHPTIS---SL---PTKMIILPVASAGGLVCFLDIGHRNFYVCNPLTQSFKE-LPARSVKVWSRVAVGMTLNGN  260 (468)
Q Consensus       188 p~~~~w~~~~l~---~~---p~~~~~~~~~s~~GLl~~~~~~~~~~~V~NP~T~~~~~-LP~~~~~~~~~~~~~~~~d~~  260 (468)
                      .....|......   .+   ....... +...+.+|+. ....+.+.+||..+++... +...   ....  ..+.+++ 
T Consensus        98 ~~~~~w~~~~~~~~~~l~~h~~~v~~~-~~~~g~~l~s-g~~dg~i~vwd~~~~~~~~~~~~h---~~~v--~~~~~~~-  169 (445)
T 2ovr_B           98 RIDTNWRRGELKSPKVLKGHDDHVITC-LQFCGNRIVS-GSDDNTLKVWSAVTGKCLRTLVGH---TGGV--WSSQMRD-  169 (445)
T ss_dssp             HHHHHHHHSCCCCCEEEECSTTSCEEE-EEEETTEEEE-EETTSCEEEEETTTCCEEEECCCC---SSCE--EEEEEET-
T ss_pred             hhhhcccCCCcceeEEecccCCCcEEE-EEEcCCEEEE-EECCCcEEEEECCCCcEEEEEcCC---CCCE--EEEEecC-
Confidence            000112211110   01   1111122 3344444444 4445689999999887553 3321   1111  2333331 


Q ss_pred             CCCCCeEEEEEEecCcEEEEeCCCCCccCCCCCCCCcccCcccccccceEEECCEEEEEEcCCCeEEEEECCCCeEEEee
Q 012227          261 STSSGYKILWVGCDGEYEIYDSLRNSWTRPGSMPSNIKLPVSLNFRSQAVSVDGILYFMRSDPEGIVSYNMVTGVWKQFI  340 (468)
Q Consensus       261 ~~~~~ykVv~v~~~~~v~vy~s~t~~W~~~~~~p~~~~~~~~~~~~~~~v~~~G~lY~~~~~~~~i~~fD~~~~~w~~i~  340 (468)
                           -.++..+.++.+.+||..++.-...  +...       ...-..+..++...+.+.....|..+|+.+++.... 
T Consensus       170 -----~~l~s~~~dg~i~vwd~~~~~~~~~--~~~h-------~~~v~~~~~~~~~l~s~s~dg~i~~wd~~~~~~~~~-  234 (445)
T 2ovr_B          170 -----NIIISGSTDRTLKVWNAETGECIHT--LYGH-------TSTVRCMHLHEKRVVSGSRDATLRVWDIETGQCLHV-  234 (445)
T ss_dssp             -----TEEEEEETTSCEEEEETTTTEEEEE--ECCC-------SSCEEEEEEETTEEEEEETTSEEEEEESSSCCEEEE-
T ss_pred             -----CEEEEEeCCCeEEEEECCcCcEEEE--ECCC-------CCcEEEEEecCCEEEEEeCCCEEEEEECCCCcEEEE-
Confidence                 1444444566799999877642211  1100       001123334555555555667899999987754332 


Q ss_pred             cCCCCCCCCceEEEECCeEEEEEEEeeCCccEEEEEEEe
Q 012227          341 IPTPLHLNDHTLAECGGRIMLVGLLTKNAATCVCIWELQ  379 (468)
Q Consensus       341 ~P~p~~~~~~~l~~~~G~L~lv~~~~~~~~~~i~Vw~ld  379 (468)
                      +..  +......+..+|++.+++..    ...+.+|.++
T Consensus       235 ~~~--~~~~v~~~~~~~~~l~~~~~----dg~i~iwd~~  267 (445)
T 2ovr_B          235 LMG--HVAAVRCVQYDGRRVVSGAY----DFMVKVWDPE  267 (445)
T ss_dssp             EEC--CSSCEEEEEECSSCEEEEET----TSCEEEEEGG
T ss_pred             EcC--CcccEEEEEECCCEEEEEcC----CCEEEEEECC
Confidence            211  11222334457777665542    2467888544

>1p22_A F-BOX/WD-repeat protein 1A; ubiquitination, degradation, signaling protein; HET: SEP; 2.95A {Homo sapiens} SCOP: a.158.1.1 b.69.4.1

Probab=98.61  E-value=5.8e-07  Score=90.17  Aligned_cols=43  Identities=14%  Similarity=0.362  Sum_probs=39.2

Q ss_pred             hhccChHH----HHHHHHhcCChhhHHHHhhcccchhhhccCcchhh
Q 012227          118 IWKEFPED----LYEAVIARLPIATFFRFRSVCQKWNSLLKSHSFSQ  160 (468)
Q Consensus       118 ~w~~LP~D----Ll~~IL~RLp~~~l~r~r~VCK~Wr~li~s~~F~~  160 (468)
                      .+..||+|    |+..||+.|+..+|.++++|||+|+.++.++.+-+
T Consensus        10 ~~~~lp~e~~~~~~~~i~~~l~~~~l~~~~~v~~~w~~~~~~~~~w~   56 (435)
T 1p22_A           10 FITALPARGLDHIAENILSYLDAKSLCAAELVCKEWYRVTSDGMLWK   56 (435)
T ss_dssp             HHHHTGGGTCHHHHHHHHTTCCHHHHHHHHHHCHHHHHHHHHTTHHH
T ss_pred             hHHHCCcchHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhcChHHHH
Confidence            46789999    99999999999999999999999999998876655

>3l2o_B F-box only protein 4; small G protein fold, UBL conjugation pathway, ubiquitin Pro ligase, protein binding-cell cycle complex; 2.80A {Homo sapiens}

Probab=97.70  E-value=1.3e-05  Score=74.38  Aligned_cols=47  Identities=13%  Similarity=0.195  Sum_probs=42.9

Q ss_pred             hhccChHHHHHHHHhcCChhhHHHHhhcccchhhhccCcchhhhhhc
Q 012227          118 IWKEFPEDLYEAVIARLPIATFFRFRSVCQKWNSLLKSHSFSQHCAQ  164 (468)
Q Consensus       118 ~w~~LP~DLl~~IL~RLp~~~l~r~r~VCK~Wr~li~s~~F~~~~~~  164 (468)
                      .+..||+||+..||+.|++++|.++.+|||+||.+..++..-+.+..
T Consensus         4 ~l~~LP~ei~l~IlsfL~p~DL~~l~~vcr~Wr~la~D~~LWr~~l~   50 (312)
T 3l2o_B            4 TLTRLPIDVQLYILSFLSPHDLCQLGSTNHYWNETVRDPILWRYFLL   50 (312)
T ss_dssp             HHHHSCHHHHHHHHHTSCHHHHHHHHTTCHHHHHHHTCHHHHHHHHH
T ss_pred             hhHhCCHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhccchHHHHHHh
Confidence            47889999999999999999999999999999999999988876544

>2ast_B S-phase kinase-associated protein 2; SCF-substrate complex, LRR, cell cycle, protein turnover COM ligase-ligase inhibitor complex; HET: TPO; 2.30A {Homo sapiens} SCOP: a.158.1.1 c.10.1.3 PDB: 2ass_B 1fqv_A* 1fs2_A

Probab=97.42  E-value=4.3e-05  Score=73.62  Aligned_cols=45  Identities=22%  Similarity=0.592  Sum_probs=39.4

Q ss_pred             hhhhccChHHHHHHHHhcCChhhHHHHhhcccchhhhccCcchhh
Q 012227          116 QEIWKEFPEDLYEAVIARLPIATFFRFRSVCQKWNSLLKSHSFSQ  160 (468)
Q Consensus       116 ~~~w~~LP~DLl~~IL~RLp~~~l~r~r~VCK~Wr~li~s~~F~~  160 (468)
                      +..|.+||+|++..||.+|+..++.+++.|||+|+.++.++.+..
T Consensus         6 ~~~~~~LP~eil~~If~~L~~~d~~~~~~vc~~W~~~~~~~~~~~   50 (336)
T 2ast_B            6 GVSWDSLPDELLLGIFSCLCLPELLKVSGVCKRWYRLASDESLWQ   50 (336)
T ss_dssp             -CCSSSSCHHHHHHHHTTSCHHHHHHTTSSCHHHHHHHTCSTTSS
T ss_pred             cCChhhCCHHHHHHHHHhCCHHHHHHHHHHHHHHHHHhcCchhhe
Confidence            345899999999999999999999999999999999987765433

>3dsm_A Uncharacterized protein bacuni_02894; seven_blated beta propeller, structural genomics, PSI-2, Pro structure initiative; 1.90A {Bacteroides uniformis}

Probab=97.30  E-value=0.038  Score=52.65  Aligned_cols=198  Identities=9%  Similarity=-0.060  Sum_probs=108.8

Q ss_pred             ecCceEEEEEcCCceEEEEcCCCCce-EecCCCCcCCcceeEEEEEEcCCCCCCCeEEEEEE-ecCcEEEEeCCCCCccC
Q 012227          212 SAGGLVCFLDIGHRNFYVCNPLTQSF-KELPARSVKVWSRVAVGMTLNGNSTSSGYKILWVG-CDGEYEIYDSLRNSWTR  289 (468)
Q Consensus       212 s~~GLl~~~~~~~~~~~V~NP~T~~~-~~LP~~~~~~~~~~~~~~~~d~~~~~~~ykVv~v~-~~~~v~vy~s~t~~W~~  289 (468)
                      ..++.+++.......+.++|+.|++. ..++...    ....+++..+       -++++.. .++.+.++|..+++-..
T Consensus        51 ~~~~~lyv~~~~~~~v~viD~~t~~~~~~i~~~~----~p~~i~~~~~-------g~lyv~~~~~~~v~~iD~~t~~~~~  119 (328)
T 3dsm_A           51 IRDGIGWIVVNNSHVIFAIDINTFKEVGRITGFT----SPRYIHFLSD-------EKAYVTQIWDYRIFIINPKTYEITG  119 (328)
T ss_dssp             EETTEEEEEEGGGTEEEEEETTTCCEEEEEECCS----SEEEEEEEET-------TEEEEEEBSCSEEEEEETTTTEEEE
T ss_pred             EECCEEEEEEcCCCEEEEEECcccEEEEEcCCCC----CCcEEEEeCC-------CeEEEEECCCCeEEEEECCCCeEEE
Confidence            35777777776667899999999887 4565321    1222333222       2777666 45679999998775321


Q ss_pred             CCCCCCCcccCcccccccceEEECCEEEEEEc-CCCeEEEEECCCCeEEEeecCCCCCCCCceEEE-ECCeEEEEEEEee
Q 012227          290 PGSMPSNIKLPVSLNFRSQAVSVDGILYFMRS-DPEGIVSYNMVTGVWKQFIIPTPLHLNDHTLAE-CGGRIMLVGLLTK  367 (468)
Q Consensus       290 ~~~~p~~~~~~~~~~~~~~~v~~~G~lY~~~~-~~~~i~~fD~~~~~w~~i~~P~p~~~~~~~l~~-~~G~L~lv~~~~~  367 (468)
                      .-.......   ........+..+|.+|+... ....|.++|+.+.+.... ++.....  ..+.. -+|+|+++.....
T Consensus       120 ~i~~g~~~~---~~~~p~~i~~~~~~lyv~~~~~~~~v~viD~~t~~~~~~-i~~g~~p--~~i~~~~dG~l~v~~~~~~  193 (328)
T 3dsm_A          120 YIECPDMDM---ESGSTEQMVQYGKYVYVNCWSYQNRILKIDTETDKVVDE-LTIGIQP--TSLVMDKYNKMWTITDGGY  193 (328)
T ss_dssp             EEECTTCCT---TTCBCCCEEEETTEEEEEECTTCCEEEEEETTTTEEEEE-EECSSCB--CCCEECTTSEEEEEBCCBC
T ss_pred             EEEcCCccc---cCCCcceEEEECCEEEEEcCCCCCEEEEEECCCCeEEEE-EEcCCCc--cceEEcCCCCEEEEECCCc
Confidence            100111000   00011223336889999875 367899999999876543 3322111  22333 3689887763221


Q ss_pred             CCc----cEEEEEEEecCCCCeEEEEeeChhhhhcccCcceEEEEEe-cCCEEEEEeeeCCCCeEEEEECCCCcEE
Q 012227          368 NAA----TCVCIWELQKMTLLWKEVDRMPNIWCLDFYGKHVRMTCLG-NKGLLMLSLRSRQMNRLVTYNVMSREWL  438 (468)
Q Consensus       368 ~~~----~~i~Vw~ld~~~~~W~~v~~mp~~~~~~~~~~~~~~~~~~-~~~~I~~~~~~~~~~~l~~YD~~t~~w~  438 (468)
                      ...    ..-.|+++|..+.+..+.-.++...       ...-.++. +++.+|+...     .+++||+++++..
T Consensus       194 ~~~~~~~~~~~v~~id~~t~~v~~~~~~~~g~-------~p~~la~~~d~~~lyv~~~-----~v~~~d~~t~~~~  257 (328)
T 3dsm_A          194 EGSPYGYEAPSLYRIDAETFTVEKQFKFKLGD-------WPSEVQLNGTRDTLYWINN-----DIWRMPVEADRVP  257 (328)
T ss_dssp             TTCSSCBCCCEEEEEETTTTEEEEEEECCTTC-------CCEEEEECTTSCEEEEESS-----SEEEEETTCSSCC
T ss_pred             cCCccccCCceEEEEECCCCeEEEEEecCCCC-------CceeEEEecCCCEEEEEcc-----EEEEEECCCCcee
Confidence            000    0125777787666544433333210       01122333 5678876421     7999999998764

>2p1m_B Transport inhibitor response 1 protein; F-BOX, leucine rich repeat, signaling protein; HET: IHP; 1.80A {Arabidopsis thaliana} PDB: 2p1n_B* 2p1o_B* 2p1p_B* 2p1q_B* 3c6n_B* 3c6o_B* 3c6p_B*

Probab=97.15  E-value=0.00015  Score=75.46  Aligned_cols=39  Identities=26%  Similarity=0.481  Sum_probs=29.3

Q ss_pred             hchhhhccChHHHHHHHHhcCC-hhhHHHHhhcccchhhh
Q 012227          114 MEQEIWKEFPEDLYEAVIARLP-IATFFRFRSVCQKWNSL  152 (468)
Q Consensus       114 ~~~~~w~~LP~DLl~~IL~RLp-~~~l~r~r~VCK~Wr~l  152 (468)
                      |+...|+.||+|++..||.+|| .+++.+++.|||+|+.+
T Consensus         1 ~~~d~~~~LPdevL~~If~~L~~~~d~~~~s~vck~W~~~   40 (594)
T 2p1m_B            1 MQKRIALSFPEEVLEHVFSFIQLDKDRNSVSLVCKSWYEI   40 (594)
T ss_dssp             ---------CHHHHHHHHHTCCCHHHHHHHHTSCHHHHHH
T ss_pred             CcccchhhCCHHHHHHHHhhcCCchhHHHHHHHHHHHHHh
Confidence            3456799999999999999999 89999999999999988

>3dsm_A Uncharacterized protein bacuni_02894; seven_blated beta propeller, structural genomics, PSI-2, Pro structure initiative; 1.90A {Bacteroides uniformis}

Probab=96.75  E-value=0.31  Score=46.16  Aligned_cols=186  Identities=11%  Similarity=-0.086  Sum_probs=98.9

Q ss_pred             CceEEEEcCCCCceEe-cCCC-CcCCcceeEEEEEEcCCCCCCCeEEEEEEe-cCcEEEEeCCCCCcc-CCCCCCCCccc
Q 012227          224 HRNFYVCNPLTQSFKE-LPAR-SVKVWSRVAVGMTLNGNSTSSGYKILWVGC-DGEYEIYDSLRNSWT-RPGSMPSNIKL  299 (468)
Q Consensus       224 ~~~~~V~NP~T~~~~~-LP~~-~~~~~~~~~~~~~~d~~~~~~~ykVv~v~~-~~~v~vy~s~t~~W~-~~~~~p~~~~~  299 (468)
                      ...+.++||.|++... +... .........-++.+++      -+++++.. .+.+.++|..+++-. .++..    ..
T Consensus        16 ~~~l~~~d~~t~~~~~~i~~~~n~~~lg~~~~~i~~~~------~~lyv~~~~~~~v~viD~~t~~~~~~i~~~----~~   85 (328)
T 3dsm_A           16 NATLSYYDPATCEVENEVFYRANGFKLGDVAQSMVIRD------GIGWIVVNNSHVIFAIDINTFKEVGRITGF----TS   85 (328)
T ss_dssp             CBEEEEEETTTTEEECSHHHHHHSSCCBSCEEEEEEET------TEEEEEEGGGTEEEEEETTTCCEEEEEECC----SS
T ss_pred             CceEEEEECCCCEEhhhhHhhhcCcccCccceEEEEEC------CEEEEEEcCCCEEEEEECcccEEEEEcCCC----CC
Confidence            4579999999998764 2100 0000011112233342      35666554 356999999877642 12111    01


Q ss_pred             CcccccccceEE-ECCEEEEEEcCCCeEEEEECCCCeEEE-eecCCCCC--CCCceEEEECCeEEEEEEEeeCCccEEEE
Q 012227          300 PVSLNFRSQAVS-VDGILYFMRSDPEGIVSYNMVTGVWKQ-FIIPTPLH--LNDHTLAECGGRIMLVGLLTKNAATCVCI  375 (468)
Q Consensus       300 ~~~~~~~~~~v~-~~G~lY~~~~~~~~i~~fD~~~~~w~~-i~~P~p~~--~~~~~l~~~~G~L~lv~~~~~~~~~~i~V  375 (468)
                      |      ...++ -+|++|+.......|..+|+.+.+... ++.+....  ..-..++..+|+||+...   ....  .|
T Consensus        86 p------~~i~~~~~g~lyv~~~~~~~v~~iD~~t~~~~~~i~~g~~~~~~~~p~~i~~~~~~lyv~~~---~~~~--~v  154 (328)
T 3dsm_A           86 P------RYIHFLSDEKAYVTQIWDYRIFIINPKTYEITGYIECPDMDMESGSTEQMVQYGKYVYVNCW---SYQN--RI  154 (328)
T ss_dssp             E------EEEEEEETTEEEEEEBSCSEEEEEETTTTEEEEEEECTTCCTTTCBCCCEEEETTEEEEEEC---TTCC--EE
T ss_pred             C------cEEEEeCCCeEEEEECCCCeEEEEECCCCeEEEEEEcCCccccCCCcceEEEECCEEEEEcC---CCCC--EE
Confidence            1      11222 588999987555789999999987653 33322000  012345557889988742   0112  45


Q ss_pred             EEEecCCCCeEEEEeeChhhhhcccCcceEEEEEecCCEEEEEeeeCC--------CCeEEEEECCCCcEEE
Q 012227          376 WELQKMTLLWKEVDRMPNIWCLDFYGKHVRMTCLGNKGLLMLSLRSRQ--------MNRLVTYNVMSREWLK  439 (468)
Q Consensus       376 w~ld~~~~~W~~v~~mp~~~~~~~~~~~~~~~~~~~~~~I~~~~~~~~--------~~~l~~YD~~t~~w~~  439 (468)
                      +++|..+.+....-.++...         .-..+..+|.+|+......        ...+.++|+++++..+
T Consensus       155 ~viD~~t~~~~~~i~~g~~p---------~~i~~~~dG~l~v~~~~~~~~~~~~~~~~~v~~id~~t~~v~~  217 (328)
T 3dsm_A          155 LKIDTETDKVVDELTIGIQP---------TSLVMDKYNKMWTITDGGYEGSPYGYEAPSLYRIDAETFTVEK  217 (328)
T ss_dssp             EEEETTTTEEEEEEECSSCB---------CCCEECTTSEEEEEBCCBCTTCSSCBCCCEEEEEETTTTEEEE
T ss_pred             EEEECCCCeEEEEEEcCCCc---------cceEEcCCCCEEEEECCCccCCccccCCceEEEEECCCCeEEE
Confidence            56676555443322222110         0123344677776543210        2689999999988764

>3mbr_X Glutamine cyclotransferase; beta-propeller; 1.44A {Xanthomonas campestris}

Probab=96.57  E-value=0.29  Score=44.34  Aligned_cols=182  Identities=13%  Similarity=0.059  Sum_probs=100.0

Q ss_pred             EEEEEcCCCCCCCeEEEEEEec---CcEEEEeCCCCCccCCCCCCCCcccCcccccccceEEECCEEEEEEcCCCeEEEE
Q 012227          253 VGMTLNGNSTSSGYKILWVGCD---GEYEIYDSLRNSWTRPGSMPSNIKLPVSLNFRSQAVSVDGILYFMRSDPEGIVSY  329 (468)
Q Consensus       253 ~~~~~d~~~~~~~ykVv~v~~~---~~v~vy~s~t~~W~~~~~~p~~~~~~~~~~~~~~~v~~~G~lY~~~~~~~~i~~f  329 (468)
                      -|+.+++      -.++.-.+.   ..+.++|..+++=...-.++..       .+.......++.+|.++...+.+.+|
T Consensus        24 qGL~~~~------~~LyestG~~g~S~v~~vD~~tgkv~~~~~l~~~-------~fgeGi~~~~~~ly~ltw~~~~v~v~   90 (243)
T 3mbr_X           24 EGLFYLR------GHLYESTGETGRSSVRKVDLETGRILQRAEVPPP-------YFGAGIVAWRDRLIQLTWRNHEGFVY   90 (243)
T ss_dssp             EEEEEET------TEEEEEECCTTSCEEEEEETTTCCEEEEEECCTT-------CCEEEEEEETTEEEEEESSSSEEEEE
T ss_pred             ccEEEEC------CEEEEECCCCCCceEEEEECCCCCEEEEEeCCCC-------cceeEEEEeCCEEEEEEeeCCEEEEE
Confidence            4666662      255554443   2599999998864322222211       11223345689999999877899999


Q ss_pred             ECCCCeEEEeecCCCCCCCCceEEEECCeEEEEEEEeeCCccEEEEEEEecCCCCeEEEEeeChhhhhcccCcceEEEEE
Q 012227          330 NMVTGVWKQFIIPTPLHLNDHTLAECGGRIMLVGLLTKNAATCVCIWELQKMTLLWKEVDRMPNIWCLDFYGKHVRMTCL  409 (468)
Q Consensus       330 D~~~~~w~~i~~P~p~~~~~~~l~~~~G~L~lv~~~~~~~~~~i~Vw~ld~~~~~W~~v~~mp~~~~~~~~~~~~~~~~~  409 (468)
                      |..+.+-..- +|.+.  ....++.-+++|++..+ .    .  +|+.+|+.+.+  .+.++.......-......+.++
T Consensus        91 D~~tl~~~~t-i~~~~--~Gwglt~dg~~L~vSdg-s----~--~l~~iDp~t~~--~~~~I~V~~~g~~~~~lNeLe~~  158 (243)
T 3mbr_X           91 DLATLTPRAR-FRYPG--EGWALTSDDSHLYMSDG-T----A--VIRKLDPDTLQ--QVGSIKVTAGGRPLDNLNELEWV  158 (243)
T ss_dssp             ETTTTEEEEE-EECSS--CCCEEEECSSCEEEECS-S----S--EEEEECTTTCC--EEEEEECEETTEECCCEEEEEEE
T ss_pred             ECCcCcEEEE-EeCCC--CceEEeeCCCEEEEECC-C----C--eEEEEeCCCCe--EEEEEEEccCCcccccceeeEEe
Confidence            9988664432 33332  33445544667776543 2    2  67888986543  33444322110000111123333


Q ss_pred             ecCCEEEEEeeeCCCCeEEEEECCCCcEEEc---cCCccCCC---Cccceeeeeeeeeee
Q 012227          410 GNKGLLMLSLRSRQMNRLVTYNVMSREWLKV---PGCVVPRG---RKRQWIACGTAFHPC  463 (468)
Q Consensus       410 ~~~~~I~~~~~~~~~~~l~~YD~~t~~w~~v---~~~~~~~~---~~~~~~~~g~~f~P~  463 (468)
                        +|.||...  ...+.|.+-|+++++....   .++.-...   .....+.-|.||.|.
T Consensus       159 --~G~lyanv--w~s~~I~vIDp~tG~V~~~idl~~l~~~~~~~~~~~~~vlNGIA~d~~  214 (243)
T 3mbr_X          159 --NGELLANV--WLTSRIARIDPASGKVVAWIDLQALVPDADALTDSTNDVLNGIAFDAE  214 (243)
T ss_dssp             --TTEEEEEE--TTTTEEEEECTTTCBEEEEEECGGGSTTTTSCCCTTSSCEEEEEEETT
T ss_pred             --CCEEEEEE--CCCCeEEEEECCCCCEEEEEECCcCccccccccCCcCCceEEEEEcCC
Confidence              68888644  3457899999999976544   22211100   112346778888773

>3hfq_A Uncharacterized protein LP_2219; Q88V64_lacpl, NESG, LPR118, structural genomics, PSI-2, protein structure initiative; 1.96A {Lactobacillus plantarum}

Probab=96.20  E-value=0.14  Score=48.49  Aligned_cols=218  Identities=13%  Similarity=0.115  Sum_probs=101.1

Q ss_pred             ecCceEEEEEc--CCceEEEEcCCCCceEecCCCCcCCcceeEEEEEEcCCCCCCCeEEEEEE-ecCcEEEEeCC-CCCc
Q 012227          212 SAGGLVCFLDI--GHRNFYVCNPLTQSFKELPARSVKVWSRVAVGMTLNGNSTSSGYKILWVG-CDGEYEIYDSL-RNSW  287 (468)
Q Consensus       212 s~~GLl~~~~~--~~~~~~V~NP~T~~~~~LP~~~~~~~~~~~~~~~~d~~~~~~~ykVv~v~-~~~~v~vy~s~-t~~W  287 (468)
                      +-+|-|++...  ....+.+|+..+++.+.+............+++.-|      .-.+++.. .++.+.+|+.. ++..
T Consensus        48 spdg~l~~~~~~~~~~~v~~~~~~~g~~~~~~~~~~~~~~p~~~a~spd------g~~l~~~~~~~~~v~v~~~~~~g~~  121 (347)
T 3hfq_A           48 SAKDCLYSVDKEDDEGGIAAWQIDGQTAHKLNTVVAPGTPPAYVAVDEA------RQLVYSANYHKGTAEVMKIAADGAL  121 (347)
T ss_dssp             CTTCEEEEEEEETTEEEEEEEEEETTEEEEEEEEEEESCCCSEEEEETT------TTEEEEEETTTTEEEEEEECTTSCE
T ss_pred             ccCCeEEEEEecCCCceEEEEEecCCcEEEeeeeecCCCCCEEEEECCC------CCEEEEEeCCCCEEEEEEeCCCCCe
Confidence            34564444433  245799999988776655431111111222333222      12344444 23458888874 3333


Q ss_pred             cCCCCCCCCcccCc--ccccccceEEE--CCEEEEEEcCCCeEEEEECC-CCeEEEee-cCCCCCCCCceEEEE-CCe-E
Q 012227          288 TRPGSMPSNIKLPV--SLNFRSQAVSV--DGILYFMRSDPEGIVSYNMV-TGVWKQFI-IPTPLHLNDHTLAEC-GGR-I  359 (468)
Q Consensus       288 ~~~~~~p~~~~~~~--~~~~~~~~v~~--~G~lY~~~~~~~~i~~fD~~-~~~w~~i~-~P~p~~~~~~~l~~~-~G~-L  359 (468)
                      +.+......-..+.  ........+.+  +|.+|+.......|..||+. +++...+. ...+....-..++.. +|+ |
T Consensus       122 ~~~~~~~~~~~~p~~~~~~~~~~~~~~spdg~l~v~~~~~~~v~~~~~~~~g~~~~~~~~~~~~g~~p~~~~~spdg~~l  201 (347)
T 3hfq_A          122 TLTDTVQHSGHGPRPEQDGSHIHYTDLTPDNRLAVIDLGSDKVYVYNVSDAGQLSEQSVLTMEAGFGPRHLVFSPDGQYA  201 (347)
T ss_dssp             EEEEEEECCCCCSSTTCSSCCEEEEEECTTSCEEEEETTTTEEEEEEECTTSCEEEEEEEECCTTCCEEEEEECTTSSEE
T ss_pred             eecceeecCCCCCCccccCCCceEEEECCCCcEEEEeCCCCEEEEEEECCCCcEEEeeeEEcCCCCCCceEEECCCCCEE
Confidence            32211100000000  00000112333  67877776666789999988 55554431 111111111123322 677 5


Q ss_pred             EEEEEEeeCCccEEEEEEEecCCCCeEEEEeeChhhhhcccCcc-eEEEEEe-cCCEEEEEeeeCCCCeEEEEECC-CCc
Q 012227          360 MLVGLLTKNAATCVCIWELQKMTLLWKEVDRMPNIWCLDFYGKH-VRMTCLG-NKGLLMLSLRSRQMNRLVTYNVM-SRE  436 (468)
Q Consensus       360 ~lv~~~~~~~~~~i~Vw~ld~~~~~W~~v~~mp~~~~~~~~~~~-~~~~~~~-~~~~I~~~~~~~~~~~l~~YD~~-t~~  436 (468)
                      +++.    .....+.+|.++..+++++.+..+..... .+.+.. ..-.++. ++..||+...  ..+.+.+||++ +++
T Consensus       202 ~v~~----~~~~~v~v~~~~~~~g~~~~~~~~~~~~~-~~~~~~~~~~i~~spdG~~l~v~~~--~~~~v~v~~~~~~g~  274 (347)
T 3hfq_A          202 FLAG----ELSSQIASLKYDTQTGAFTQLGIVKTIPA-DYTAHNGAAAIRLSHDGHFLYVSNR--GYNTLAVFAVTADGH  274 (347)
T ss_dssp             EEEE----TTTTEEEEEEEETTTTEEEEEEEEESSCT-TCCSCCEEEEEEECTTSCEEEEEEE--TTTEEEEEEECGGGC
T ss_pred             EEEe----CCCCEEEEEEecCCCCceEEeeeeeecCC-CCCCCCcceeEEECCCCCEEEEEeC--CCCEEEEEEECCCCc
Confidence            5433    23467899999876667666544421110 000000 1122333 4456766432  24678899986 335


Q ss_pred             EEEccC
Q 012227          437 WLKVPG  442 (468)
Q Consensus       437 w~~v~~  442 (468)
                      ++.+..
T Consensus       275 ~~~~~~  280 (347)
T 3hfq_A          275 LTLIQQ  280 (347)
T ss_dssp             EEEEEE
T ss_pred             EEEeEE
Confidence            555443

>3nol_A Glutamine cyclotransferase; beta-propeller, glutaminyl cyclase, pyrogl transferase; 1.70A {Zymomonas mobilis} PDB: 3nom_A

Probab=96.09  E-value=0.32  Score=44.54  Aligned_cols=173  Identities=10%  Similarity=-0.017  Sum_probs=94.7

Q ss_pred             EEEEEEec-C--cEEEEeCCCCCccCCCCCCCCcccCcccccccceEEECCEEEEEEcCCCeEEEEECCCCeE-EEeecC
Q 012227          267 KILWVGCD-G--EYEIYDSLRNSWTRPGSMPSNIKLPVSLNFRSQAVSVDGILYFMRSDPEGIVSYNMVTGVW-KQFIIP  342 (468)
Q Consensus       267 kVv~v~~~-~--~v~vy~s~t~~W~~~~~~p~~~~~~~~~~~~~~~v~~~G~lY~~~~~~~~i~~fD~~~~~w-~~i~~P  342 (468)
                      .++.-.+. +  .+.++|..+++=...-.++..       .+.......++.+|.++...+.+.+||+++.+- ..++.+
T Consensus        54 ~LyestG~~g~S~v~~vD~~Tgkv~~~~~l~~~-------~FgeGit~~g~~ly~ltw~~~~v~v~D~~t~~~~~ti~~~  126 (262)
T 3nol_A           54 YFYESTGLNGRSSIRKVDIESGKTLQQIELGKR-------YFGEGISDWKDKIVGLTWKNGLGFVWNIRNLRQVRSFNYD  126 (262)
T ss_dssp             EEEEEEEETTEEEEEEECTTTCCEEEEEECCTT-------CCEEEEEEETTEEEEEESSSSEEEEEETTTCCEEEEEECS
T ss_pred             EEEEECCCCCCceEEEEECCCCcEEEEEecCCc-------cceeEEEEeCCEEEEEEeeCCEEEEEECccCcEEEEEECC
Confidence            56654443 2  489999998763322112211       111223456889999998778999999988654 344332


Q ss_pred             CCCCCCCceEEEECCeEEEEEEEeeCCccEEEEEEEecCCCCeEEEEeeChhhhhcccCcceEEEEEecCCEEEEEeeeC
Q 012227          343 TPLHLNDHTLAECGGRIMLVGLLTKNAATCVCIWELQKMTLLWKEVDRMPNIWCLDFYGKHVRMTCLGNKGLLMLSLRSR  422 (468)
Q Consensus       343 ~p~~~~~~~l~~~~G~L~lv~~~~~~~~~~i~Vw~ld~~~~~W~~v~~mp~~~~~~~~~~~~~~~~~~~~~~I~~~~~~~  422 (468)
                        .  .+..++.-+++|++..+ .    .  .||.+|+.+.+  .+.+++...-.........+.++  +|.||+..  .
T Consensus       127 --~--eG~glt~dg~~L~~SdG-s----~--~i~~iDp~T~~--v~~~I~V~~~g~~~~~lNELe~~--~G~lyan~--w  189 (262)
T 3nol_A          127 --G--EGWGLTHNDQYLIMSDG-T----P--VLRFLDPESLT--PVRTITVTAHGEELPELNELEWV--DGEIFANV--W  189 (262)
T ss_dssp             --S--CCCCEEECSSCEEECCS-S----S--EEEEECTTTCS--EEEEEECEETTEECCCEEEEEEE--TTEEEEEE--T
T ss_pred             --C--CceEEecCCCEEEEECC-C----C--eEEEEcCCCCe--EEEEEEeccCCccccccceeEEE--CCEEEEEE--c
Confidence              2  23344544566766542 1    2  68888986443  33444322110000100123443  67888643  3


Q ss_pred             CCCeEEEEECCCCcEEEc---cCCccCC--CCccceeeeeeeeeee
Q 012227          423 QMNRLVTYNVMSREWLKV---PGCVVPR--GRKRQWIACGTAFHPC  463 (468)
Q Consensus       423 ~~~~l~~YD~~t~~w~~v---~~~~~~~--~~~~~~~~~g~~f~P~  463 (468)
                      ..+.|.+-|+++++....   +++.-..  ......+.-|.||.|.
T Consensus       190 ~~~~I~vIDp~tG~V~~~Id~~~L~~~~~~~~~~~~vlNGIA~dp~  235 (262)
T 3nol_A          190 QTNKIVRIDPETGKVTGIIDLNGILAEAGPLPSPIDVLNGIAWDKE  235 (262)
T ss_dssp             TSSEEEEECTTTCBEEEEEECTTGGGGSCSCCSSCCCEEEEEEETT
T ss_pred             cCCeEEEEECCCCcEEEEEECCcCccccccccCcCCceEEEEEcCC
Confidence            467899999999976544   2221110  0112346778888774

>3jrp_A Fusion protein of protein transport protein SEC13 nucleoporin NUP145; protein complex, cytoplasmic vesicle, endoplasmic reticulum; 2.60A {Saccharomyces cerevisiae}

Probab=95.98  E-value=0.4  Score=45.37  Aligned_cols=187  Identities=12%  Similarity=0.100  Sum_probs=90.8

Q ss_pred             CceEEEEcCCCCceEecCCCCcCCcceeEEEEEEcCCCCCCCeEEEEEEecCcEEEEeCCCCCccCCCCCCCCcccCccc
Q 012227          224 HRNFYVCNPLTQSFKELPARSVKVWSRVAVGMTLNGNSTSSGYKILWVGCDGEYEIYDSLRNSWTRPGSMPSNIKLPVSL  303 (468)
Q Consensus       224 ~~~~~V~NP~T~~~~~LP~~~~~~~~~~~~~~~~d~~~~~~~ykVv~v~~~~~v~vy~s~t~~W~~~~~~p~~~~~~~~~  303 (468)
                      ...+.|||..+++...+.....+....  ..+.+.  +......++..+.++.+.+||..++.|..+........     
T Consensus        32 dg~i~iw~~~~~~~~~~~~~~~h~~~v--~~~~~~--~~~~~~~l~s~~~dg~v~iwd~~~~~~~~~~~~~~~~~-----  102 (379)
T 3jrp_A           32 DKTIKIFEVEGETHKLIDTLTGHEGPV--WRVDWA--HPKFGTILASCSYDGKVLIWKEENGRWSQIAVHAVHSA-----  102 (379)
T ss_dssp             TSCEEEEEEETTEEEEEEEECCCSSCE--EEEEEC--CGGGCSEEEEEETTSCEEEEEEETTEEEEEEEECCCSS-----
T ss_pred             CCcEEEEecCCCcceeeeEecCCCCcE--EEEEeC--CCCCCCEEEEeccCCEEEEEEcCCCceeEeeeecCCCc-----
Confidence            346777777644443332221111122  223332  11112345544556779999999887765433221100     


Q ss_pred             ccccceEEE--C--CEEEEEEcCCCeEEEEECCCCeE-EEeecCCCCCCCCc-eEEEE--------------CCeEEEEE
Q 012227          304 NFRSQAVSV--D--GILYFMRSDPEGIVSYNMVTGVW-KQFIIPTPLHLNDH-TLAEC--------------GGRIMLVG  363 (468)
Q Consensus       304 ~~~~~~v~~--~--G~lY~~~~~~~~i~~fD~~~~~w-~~i~~P~p~~~~~~-~l~~~--------------~G~L~lv~  363 (468)
                        .-..+.+  +  |.+.+.+.....|..||+.+..- .......  +.... .+...              +|.+++++
T Consensus       103 --~v~~~~~~~~~~~~~l~~~~~d~~i~v~d~~~~~~~~~~~~~~--~~~~v~~~~~~~~~~~~~~~~~~~~~~~~l~~~  178 (379)
T 3jrp_A          103 --SVNSVQWAPHEYGPLLLVASSDGKVSVVEFKENGTTSPIIIDA--HAIGVNSASWAPATIEEDGEHNGTKESRKFVTG  178 (379)
T ss_dssp             --CEEEEEECCGGGCSEEEEEETTSEEEEEECCTTSCCCEEEEEC--CTTCEEEEEECCCC----------CTTCEEEEE
T ss_pred             --ceEEEEeCCCCCCCEEEEecCCCcEEEEecCCCCceeeEEecC--CCCceEEEEEcCccccccccccCCCCCCEEEEE
Confidence              1112222  2  55555555566888999877621 1111111  11111 11111              46666655


Q ss_pred             EEeeCCccEEEEEEEecCCCCeEEEEeeChhhhhcccCcceEEEEEecC---CEEEEEeeeCCCCeEEEEECCCC
Q 012227          364 LLTKNAATCVCIWELQKMTLLWKEVDRMPNIWCLDFYGKHVRMTCLGNK---GLLMLSLRSRQMNRLVTYNVMSR  435 (468)
Q Consensus       364 ~~~~~~~~~i~Vw~ld~~~~~W~~v~~mp~~~~~~~~~~~~~~~~~~~~---~~I~~~~~~~~~~~l~~YD~~t~  435 (468)
                      ..    ...+.+|.+......|..+..+....     + .+.-.++..+   +.+++...  ..+.+.+||+.++
T Consensus       179 ~~----dg~i~i~d~~~~~~~~~~~~~~~~h~-----~-~v~~~~~sp~~~~~~~l~s~~--~dg~i~iwd~~~~  241 (379)
T 3jrp_A          179 GA----DNLVKIWKYNSDAQTYVLESTLEGHS-----D-WVRDVAWSPTVLLRSYLASVS--QDRTCIIWTQDNE  241 (379)
T ss_dssp             ET----TSCEEEEEEETTTTEEEEEEEECCCS-----S-CEEEEEECCCCSSSEEEEEEE--TTSCEEEEEESST
T ss_pred             eC----CCeEEEEEecCCCcceeeEEEEeccc-----C-cEeEEEECCCCCCCCeEEEEe--CCCEEEEEeCCCC
Confidence            32    24789998887666777666553211     0 0111122223   44444332  3467889998876

>4gga_A P55CDC, cell division cycle protein 20 homolog; cell cycle, mitosis, securin, ubiquitination, WD40; 2.04A {Homo sapiens} PDB: 4ggd_A

Probab=95.74  E-value=0.26  Score=48.26  Aligned_cols=146  Identities=16%  Similarity=0.131  Sum_probs=72.7

Q ss_pred             ecCceEEEEEcCCceEEEEcCCCCceEecCCCCcCCcceeEEEEEEcCCCCCCCeEEEEEE-ecCcEEEEeCCCCCccCC
Q 012227          212 SAGGLVCFLDIGHRNFYVCNPLTQSFKELPARSVKVWSRVAVGMTLNGNSTSSGYKILWVG-CDGEYEIYDSLRNSWTRP  290 (468)
Q Consensus       212 s~~GLl~~~~~~~~~~~V~NP~T~~~~~LP~~~~~~~~~~~~~~~~d~~~~~~~ykVv~v~-~~~~v~vy~s~t~~W~~~  290 (468)
                      |.+++|.+..  .+.++|||..|++...+-....+......+.  +.+   .  .+.++.+ .++.+.+||..+++-.. 
T Consensus       114 S~~n~lAvgl--d~tV~lWd~~tg~~~~~~~~~~~~~~V~sv~--fsp---d--g~~lasgs~Dg~v~iWd~~~~~~~~-  183 (420)
T 4gga_A          114 SSGNVLAVAL--DNSVYLWSASSGDILQLLQMEQPGEYISSVA--WIK---E--GNYLAVGTSSAEVQLWDVQQQKRLR-  183 (420)
T ss_dssp             CTTSEEEEEE--TTEEEEEETTTCCEEEEEECCSTTCCEEEEE--ECT---T--SSEEEEEETTSCEEEEETTTTEEEE-
T ss_pred             CCCCEEEEEe--CCEEEEEECCCCCEEEEEEecCCCCcEEEEE--ECC---C--CCEEEEEECCCeEEEEEcCCCcEEE-
Confidence            3456665554  3489999999998775433222221222333  331   1  2333344 45679999988764211 


Q ss_pred             CCCCCCcccCcccccccceEEECCEEEEEEcCCCeEEEEECCCCeEEEeecCCCCCCCCceEEE--ECCeEEEEEEEeeC
Q 012227          291 GSMPSNIKLPVSLNFRSQAVSVDGILYFMRSDPEGIVSYNMVTGVWKQFIIPTPLHLNDHTLAE--CGGRIMLVGLLTKN  368 (468)
Q Consensus       291 ~~~p~~~~~~~~~~~~~~~v~~~G~lY~~~~~~~~i~~fD~~~~~w~~i~~P~p~~~~~~~l~~--~~G~L~lv~~~~~~  368 (468)
                       .+...       .....++..++.+...+.....+..+|..+.......+..  +........  -+|+..+.+..   
T Consensus       184 -~~~~h-------~~~v~~~s~~~~~l~sgs~d~~i~~~d~~~~~~~~~~~~~--h~~~~~~~~~~~~g~~l~s~~~---  250 (420)
T 4gga_A          184 -NMTSH-------SARVGSLSWNSYILSSGSRSGHIHHHDVRVAEHHVATLSG--HSQEVCGLRWAPDGRHLASGGN---  250 (420)
T ss_dssp             -EECCC-------SSCEEEEEEETTEEEEEETTSEEEEEETTSSSCEEEEEEC--CSSCEEEEEECTTSSEEEEEET---
T ss_pred             -EEeCC-------CCceEEEeeCCCEEEEEeCCCceeEeeecccceeeEEecc--cccceeeeeecCCCCeeeeeec---
Confidence             11100       0112244456666666666667888887765433221211  111111122  15555544431   


Q ss_pred             CccEEEEEEEecC
Q 012227          369 AATCVCIWELQKM  381 (468)
Q Consensus       369 ~~~~i~Vw~ld~~  381 (468)
                       ...+.||.....
T Consensus       251 -D~~v~i~~~~~~  262 (420)
T 4gga_A          251 -DNLVNVWPSAPG  262 (420)
T ss_dssp             -TSCEEEEESSCC
T ss_pred             -cccceEEeeccc
Confidence             246788866543

>2z2n_A Virginiamycin B lyase; seven-bladed beta-propeller, antibiotic resistance, E mechanism, virginiamycin B hydrolase streptogramin; HET: MSE; 1.65A {Staphylococcus aureus} PDB: 2z2o_A 2z2p_A*

Probab=95.66  E-value=1.2  Score=40.41  Aligned_cols=187  Identities=12%  Similarity=0.167  Sum_probs=97.0

Q ss_pred             ecCceEEEEEcCCceEEEEcCCCCceEecCCCCcCCcceeEEEEEEcCCCCCCCeEEEEEEe-cCcEEEEeCCCCCccCC
Q 012227          212 SAGGLVCFLDIGHRNFYVCNPLTQSFKELPARSVKVWSRVAVGMTLNGNSTSSGYKILWVGC-DGEYEIYDSLRNSWTRP  290 (468)
Q Consensus       212 s~~GLl~~~~~~~~~~~V~NP~T~~~~~LP~~~~~~~~~~~~~~~~d~~~~~~~ykVv~v~~-~~~v~vy~s~t~~W~~~  290 (468)
                      ..+|.+++.......++++|+ +++...+.....   .....++..++  .   .++++... ...+.+|+. ++.....
T Consensus       107 ~~~g~l~v~~~~~~~i~~~d~-~g~~~~~~~~~~---~~~~~~i~~~~--~---g~l~v~~~~~~~i~~~~~-~g~~~~~  176 (299)
T 2z2n_A          107 GPNGDIWFTEMNGNRIGRITD-DGKIREYELPNK---GSYPSFITLGS--D---NALWFTENQNNAIGRITE-SGDITEF  176 (299)
T ss_dssp             CTTSCEEEEETTTTEEEEECT-TCCEEEEECSST---TCCEEEEEECT--T---SCEEEEETTTTEEEEECT-TCCEEEE
T ss_pred             CCCCCEEEEecCCceEEEECC-CCCEEEecCCCC---CCCCceEEEcC--C---CCEEEEeCCCCEEEEEcC-CCcEEEe
Confidence            346777777665568999999 777665433211   11223455552  1   24554443 345888888 6665432


Q ss_pred             CCCCCCcccCcccccccceEEE--CCEEEEEEcCCCeEEEEECCCCeEEEeecCCCCCCCCc-eEEE-ECCeEEEEEEEe
Q 012227          291 GSMPSNIKLPVSLNFRSQAVSV--DGILYFMRSDPEGIVSYNMVTGVWKQFIIPTPLHLNDH-TLAE-CGGRIMLVGLLT  366 (468)
Q Consensus       291 ~~~p~~~~~~~~~~~~~~~v~~--~G~lY~~~~~~~~i~~fD~~~~~w~~i~~P~p~~~~~~-~l~~-~~G~L~lv~~~~  366 (468)
                      . .+....       ...++.+  +|.+|+.......|..||+ ++++..+..+..  .... .++. -+|+|++.... 
T Consensus       177 ~-~~~~~~-------~~~~i~~~~~g~l~v~~~~~~~i~~~~~-~g~~~~~~~~~~--~~~~~~i~~~~~g~l~v~~~~-  244 (299)
T 2z2n_A          177 K-IPTPAS-------GPVGITKGNDDALWFVEIIGNKIGRITT-SGEITEFKIPTP--NARPHAITAGAGIDLWFTEWG-  244 (299)
T ss_dssp             E-CSSTTC-------CEEEEEECTTSSEEEEETTTTEEEEECT-TCCEEEEECSST--TCCEEEEEECSTTCEEEEETT-
T ss_pred             e-CCCCCC-------cceeEEECCCCCEEEEccCCceEEEECC-CCcEEEEECCCC--CCCceeEEECCCCCEEEeccC-
Confidence            1 111100       1123334  5788887765678999999 777766544421  1222 2333 26888875421 


Q ss_pred             eCCccEEEEEEEecCCCCeEEEEeeChhhhhcccCcceEEEEEecCCEEEEEeeeCCCCeEEEEECCCCcE
Q 012227          367 KNAATCVCIWELQKMTLLWKEVDRMPNIWCLDFYGKHVRMTCLGNKGLLMLSLRSRQMNRLVTYNVMSREW  437 (468)
Q Consensus       367 ~~~~~~i~Vw~ld~~~~~W~~v~~mp~~~~~~~~~~~~~~~~~~~~~~I~~~~~~~~~~~l~~YD~~t~~w  437 (468)
                         ..  .|++++. +.....+ .++...      ....-.++ .++.||+...   .+.+..||+++++.
T Consensus       245 ---~~--~i~~~d~-~g~~~~~-~~~~~~------~~~~~i~~-~~g~l~v~~~---~~~l~~~~~~~~~~  298 (299)
T 2z2n_A          245 ---AN--KIGRLTS-NNIIEEY-PIQIKS------AEPHGICF-DGETIWFAME---CDKIGKLTLIKDNM  298 (299)
T ss_dssp             ---TT--EEEEEET-TTEEEEE-ECSSSS------CCEEEEEE-CSSCEEEEET---TTEEEEEEEC----
T ss_pred             ---Cc--eEEEECC-CCceEEE-eCCCCC------CccceEEe-cCCCEEEEec---CCcEEEEEcCcccC
Confidence               12  4555565 2332222 122110      01111223 6778877532   36899999988754

>2qc5_A Streptogramin B lactonase; beta propeller, lyase; 1.80A {Staphylococcus cohnii}

Probab=95.62  E-value=1  Score=40.98  Aligned_cols=191  Identities=15%  Similarity=0.162  Sum_probs=100.0

Q ss_pred             ecCceEEEEEcCCceEEEEcCCCCceEecCCCCcCCcceeEEEEEEcCCCCCCCeEEEEEEe-cCcEEEEeCCCCCccCC
Q 012227          212 SAGGLVCFLDIGHRNFYVCNPLTQSFKELPARSVKVWSRVAVGMTLNGNSTSSGYKILWVGC-DGEYEIYDSLRNSWTRP  290 (468)
Q Consensus       212 s~~GLl~~~~~~~~~~~V~NP~T~~~~~LP~~~~~~~~~~~~~~~~d~~~~~~~ykVv~v~~-~~~v~vy~s~t~~W~~~  290 (468)
                      ..+|-+++.......++++|+. ++...+..+...   ....++..+  +   +.++++... ...+..|+.. +.....
T Consensus        70 ~~~g~l~v~~~~~~~v~~~d~~-g~~~~~~~~~~~---~~~~~i~~~--~---~g~l~v~~~~~~~i~~~~~~-g~~~~~  139 (300)
T 2qc5_A           70 SSLGDIWFTENGANKIGKLSKK-GGFTEYPLPQPD---SGPYGITEG--L---NGDIWFTQLNGDRIGKLTAD-GTIYEY  139 (300)
T ss_dssp             CTTSCEEEEETTTTEEEEECTT-SCEEEEECSSTT---CCEEEEEEC--S---TTCEEEEETTTTEEEEECTT-SCEEEE
T ss_pred             CCCCCEEEEecCCCeEEEECCC-CCeEEecCCCCC---CCCccceEC--C---CCCEEEEccCCCeEEEECCC-CCEEEc
Confidence            3567777777655689999998 776654332111   122344455  2   124554443 3458888876 544322


Q ss_pred             CCCCCCcccCcccccccceEEE--CCEEEEEEcCCCeEEEEECCCCeEEEeecCCCCCCCCc-eEEEE-CCeEEEEEEEe
Q 012227          291 GSMPSNIKLPVSLNFRSQAVSV--DGILYFMRSDPEGIVSYNMVTGVWKQFIIPTPLHLNDH-TLAEC-GGRIMLVGLLT  366 (468)
Q Consensus       291 ~~~p~~~~~~~~~~~~~~~v~~--~G~lY~~~~~~~~i~~fD~~~~~w~~i~~P~p~~~~~~-~l~~~-~G~L~lv~~~~  366 (468)
                      . .+....       ....+.+  +|.+|+.......|..||+ ++++..+..|..  .... .++.. +|.|++.... 
T Consensus       140 ~-~~~~~~-------~~~~i~~d~~g~l~v~~~~~~~i~~~~~-~g~~~~~~~~~~--~~~~~~i~~d~~g~l~v~~~~-  207 (300)
T 2qc5_A          140 D-LPNKGS-------YPAFITLGSDNALWFTENQNNSIGRITN-TGKLEEYPLPTN--AAAPVGITSGNDGALWFVEIM-  207 (300)
T ss_dssp             E-CSSTTC-------CEEEEEECTTSSEEEEETTTTEEEEECT-TCCEEEEECSST--TCCEEEEEECTTSSEEEEETT-
T ss_pred             c-CCCCCC-------CceeEEECCCCCEEEEecCCCeEEEECC-CCcEEEeeCCCC--CCCcceEEECCCCCEEEEccC-
Confidence            1 111100       1123333  5888887765678999999 666665544322  1222 23332 6888876421 


Q ss_pred             eCCccEEEEEEEecCCCCeEEEEeeChhhhhcccCcceEEEEEecCCEEEEEeeeCCCCeEEEEECCCCcEEEc
Q 012227          367 KNAATCVCIWELQKMTLLWKEVDRMPNIWCLDFYGKHVRMTCLGNKGLLMLSLRSRQMNRLVTYNVMSREWLKV  440 (468)
Q Consensus       367 ~~~~~~i~Vw~ld~~~~~W~~v~~mp~~~~~~~~~~~~~~~~~~~~~~I~~~~~~~~~~~l~~YD~~t~~w~~v  440 (468)
                         ..  .|++++. ++.+.... ++...    .  ...-.++..+|.||+..  ...+.+..||+ +++...+
T Consensus       208 ---~~--~i~~~~~-~g~~~~~~-~~~~~----~--~~~~i~~d~~g~l~v~~--~~~~~i~~~~~-~g~~~~~  265 (300)
T 2qc5_A          208 ---GN--KIGRITT-TGEISEYD-IPTPN----A--RPHAITAGKNSEIWFTE--WGANQIGRITN-DNTIQEY  265 (300)
T ss_dssp             ---TT--EEEEECT-TCCEEEEE-CSSTT----C--CEEEEEECSTTCEEEEE--TTTTEEEEECT-TSCEEEE
T ss_pred             ---CC--EEEEEcC-CCcEEEEE-CCCCC----C--CceEEEECCCCCEEEec--cCCCeEEEECC-CCcEEEE
Confidence               12  4556666 45554432 22111    0  01122334456787643  23468999998 5666544

>3mbr_X Glutamine cyclotransferase; beta-propeller; 1.44A {Xanthomonas campestris}

Probab=95.54  E-value=0.22  Score=45.17  Aligned_cols=108  Identities=10%  Similarity=0.009  Sum_probs=71.6

Q ss_pred             EEECCEEEEEEcC--CCeEEEEECCCCeEEEeecCCCCCCCCceEEEECCeEEEEEEEeeCCccEEEEEEEecCCCCeEE
Q 012227          310 VSVDGILYFMRSD--PEGIVSYNMVTGVWKQFIIPTPLHLNDHTLAECGGRIMLVGLLTKNAATCVCIWELQKMTLLWKE  387 (468)
Q Consensus       310 v~~~G~lY~~~~~--~~~i~~fD~~~~~w~~i~~P~p~~~~~~~l~~~~G~L~lv~~~~~~~~~~i~Vw~ld~~~~~W~~  387 (468)
                      .+.+|.+|.-++.  ...|..+|+++++-..- .+.+.......+...+++||++....+      .+|++|.  ..-+.
T Consensus        27 ~~~~~~LyestG~~g~S~v~~vD~~tgkv~~~-~~l~~~~fgeGi~~~~~~ly~ltw~~~------~v~v~D~--~tl~~   97 (243)
T 3mbr_X           27 FYLRGHLYESTGETGRSSVRKVDLETGRILQR-AEVPPPYFGAGIVAWRDRLIQLTWRNH------EGFVYDL--ATLTP   97 (243)
T ss_dssp             EEETTEEEEEECCTTSCEEEEEETTTCCEEEE-EECCTTCCEEEEEEETTEEEEEESSSS------EEEEEET--TTTEE
T ss_pred             EEECCEEEEECCCCCCceEEEEECCCCCEEEE-EeCCCCcceeEEEEeCCEEEEEEeeCC------EEEEEEC--CcCcE
Confidence            3457888887763  35799999999876542 444444444567778999999864332      6788887  44556


Q ss_pred             EEeeChhhhhcccCcceEEEEEecCCEEEEEeeeCCCCeEEEEECCCCcE
Q 012227          388 VDRMPNIWCLDFYGKHVRMTCLGNKGLLMLSLRSRQMNRLVTYNVMSREW  437 (468)
Q Consensus       388 v~~mp~~~~~~~~~~~~~~~~~~~~~~I~~~~~~~~~~~l~~YD~~t~~w  437 (468)
                      +.+++...    .    .+.+..+++.+|++.+   ...+..+|+++.+.
T Consensus        98 ~~ti~~~~----~----Gwglt~dg~~L~vSdg---s~~l~~iDp~t~~~  136 (243)
T 3mbr_X           98 RARFRYPG----E----GWALTSDDSHLYMSDG---TAVIRKLDPDTLQQ  136 (243)
T ss_dssp             EEEEECSS----C----CCEEEECSSCEEEECS---SSEEEEECTTTCCE
T ss_pred             EEEEeCCC----C----ceEEeeCCCEEEEECC---CCeEEEEeCCCCeE
Confidence            66665321    1    1344556778877532   56899999998654

>3nok_A Glutaminyl cyclase; beta-propeller, cyclotransferase, pyrogl transferase; HET: MES DDQ; 1.65A {Myxococcus xanthus}

Probab=95.46  E-value=0.85  Score=41.81  Aligned_cols=173  Identities=9%  Similarity=0.005  Sum_probs=94.8

Q ss_pred             EEEEEEec-CcEEEEeCCCCCccCCCCCCCCcccCcccccccceEEECCEEEEEEcCCCeEEEEECCCCeEEEeecCCCC
Q 012227          267 KILWVGCD-GEYEIYDSLRNSWTRPGSMPSNIKLPVSLNFRSQAVSVDGILYFMRSDPEGIVSYNMVTGVWKQFIIPTPL  345 (468)
Q Consensus       267 kVv~v~~~-~~v~vy~s~t~~W~~~~~~p~~~~~~~~~~~~~~~v~~~G~lY~~~~~~~~i~~fD~~~~~w~~i~~P~p~  345 (468)
                      .++...+. +.+.++|..+++=...- ++..       .+.......++.+|.++...+.+.+||+++.+-..- +|.+.
T Consensus        66 ~Ly~stG~~g~v~~iD~~Tgkv~~~~-l~~~-------~FgeGit~~g~~Ly~ltw~~~~v~V~D~~Tl~~~~t-i~~~~  136 (268)
T 3nok_A           66 HFFESTGHQGTLRQLSLESAQPVWME-RLGN-------IFAEGLASDGERLYQLTWTEGLLFTWSGMPPQRERT-TRYSG  136 (268)
T ss_dssp             EEEEEETTTTEEEECCSSCSSCSEEE-ECTT-------CCEEEEEECSSCEEEEESSSCEEEEEETTTTEEEEE-EECSS
T ss_pred             EEEEEcCCCCEEEEEECCCCcEEeEE-CCCC-------cceeEEEEeCCEEEEEEccCCEEEEEECCcCcEEEE-EeCCC
Confidence            55544443 35899999887632211 2211       111223345789999988778999999998665431 23322


Q ss_pred             CCCCceEEEECCeEEEEEEEeeCCccEEEEEEEecCCCCeEEEEeeChhhhhcccCcceEEEEEecCCEEEEEeeeCCCC
Q 012227          346 HLNDHTLAECGGRIMLVGLLTKNAATCVCIWELQKMTLLWKEVDRMPNIWCLDFYGKHVRMTCLGNKGLLMLSLRSRQMN  425 (468)
Q Consensus       346 ~~~~~~l~~~~G~L~lv~~~~~~~~~~i~Vw~ld~~~~~W~~v~~mp~~~~~~~~~~~~~~~~~~~~~~I~~~~~~~~~~  425 (468)
                        ....++.-+++||+..+ .    .  .|+.+|+.+.  +.+.+++...-..-......+.++  +|.||+..  ...+
T Consensus       137 --eGwGLt~Dg~~L~vSdG-s----~--~l~~iDp~T~--~v~~~I~V~~~g~~v~~lNeLe~~--dG~lyanv--w~s~  201 (268)
T 3nok_A          137 --EGWGLCYWNGKLVRSDG-G----T--MLTFHEPDGF--ALVGAVQVKLRGQPVELINELECA--NGVIYANI--WHSS  201 (268)
T ss_dssp             --CCCCEEEETTEEEEECS-S----S--EEEEECTTTC--CEEEEEECEETTEECCCEEEEEEE--TTEEEEEE--TTCS
T ss_pred             --ceeEEecCCCEEEEECC-C----C--EEEEEcCCCC--eEEEEEEeCCCCcccccccccEEe--CCEEEEEE--CCCC
Confidence              23456666777877543 2    2  6788898654  344444322111001011123444  67888643  3467


Q ss_pred             eEEEEECCCCcEEEccCCc-c----C-CCCccceeeeeeeeeee
Q 012227          426 RLVTYNVMSREWLKVPGCV-V----P-RGRKRQWIACGTAFHPC  463 (468)
Q Consensus       426 ~l~~YD~~t~~w~~v~~~~-~----~-~~~~~~~~~~g~~f~P~  463 (468)
                      .|.+-|+++++....=.+. +    + .......+.-|.||.|.
T Consensus       202 ~I~vIDp~TG~V~~~Idl~~L~~~~~~~~~~~~~vlNGIA~dp~  245 (268)
T 3nok_A          202 DVLEIDPATGTVVGVIDASALTRAVAGQVTNPEAVLNGIAVEPG  245 (268)
T ss_dssp             EEEEECTTTCBEEEEEECHHHHHHHTTTCCCTTCCEEEEEECTT
T ss_pred             eEEEEeCCCCcEEEEEECCCCcccccccccCcCCceEEEEEcCC
Confidence            8999999999765442221 1    0 00112236778888774

>3ogk_B Coronatine-insensitive protein 1; leucine rich repeat, ubiquitin ligase, SCF, protein binding; HET: OGK; 2.80A {Arabidopsis thaliana} PDB: 3ogl_B* 3ogm_B*

Probab=95.37  E-value=0.0047  Score=64.11  Aligned_cols=33  Identities=18%  Similarity=0.311  Sum_probs=31.2

Q ss_pred             ccChHHHHHHHHhcC-ChhhHHHHhhcccchhhh
Q 012227          120 KEFPEDLYEAVIARL-PIATFFRFRSVCQKWNSL  152 (468)
Q Consensus       120 ~~LP~DLl~~IL~RL-p~~~l~r~r~VCK~Wr~l  152 (468)
                      ..||||++..||.+| +.+++.+++.|||+|+.+
T Consensus        14 ~~LPdeil~~I~~~L~~~~d~~~~s~vck~W~~~   47 (592)
T 3ogk_B           14 VATVDDVIEQVMTYITDPKDRDSASLVCRRWFKI   47 (592)
T ss_dssp             CCCGGGTHHHHHTTCCCHHHHHHHTTSCHHHHHH
T ss_pred             CCCCHHHHHHHHHhcCCHHHHHHHHHHhHHHHHh
Confidence            479999999999999 899999999999999987

>1l0q_A Surface layer protein; SLP, S-layer, 7-bladed beta-propeller superfamily, protein binding; HET: YCM; 2.40A {Methanosarcina mazei} SCOP: b.1.3.1 b.69.2.3

Probab=95.21  E-value=0.82  Score=43.71  Aligned_cols=189  Identities=11%  Similarity=0.103  Sum_probs=93.0

Q ss_pred             CceEEEEEcCCceEEEEcCCCCceEecCCCCcCCcceeEEEEEEcCCCCCCCeEEEEEEe-cCcEEEEeCCCCCccCCCC
Q 012227          214 GGLVCFLDIGHRNFYVCNPLTQSFKELPARSVKVWSRVAVGMTLNGNSTSSGYKILWVGC-DGEYEIYDSLRNSWTRPGS  292 (468)
Q Consensus       214 ~GLl~~~~~~~~~~~V~NP~T~~~~~LP~~~~~~~~~~~~~~~~d~~~~~~~ykVv~v~~-~~~v~vy~s~t~~W~~~~~  292 (468)
                      +..|++.......+.+||..+++....-....   ..  .++.+.+    ..-.+++.+. ++.+.+||..++.-...-.
T Consensus        43 g~~l~~~~~~d~~i~v~d~~~~~~~~~~~~~~---~v--~~~~~sp----dg~~l~~~~~~~~~v~v~d~~~~~~~~~~~  113 (391)
T 1l0q_A           43 GTKVYVANAHSNDVSIIDTATNNVIATVPAGS---SP--QGVAVSP----DGKQVYVTNMASSTLSVIDTTSNTVAGTVK  113 (391)
T ss_dssp             SSEEEEEEGGGTEEEEEETTTTEEEEEEECSS---SE--EEEEECT----TSSEEEEEETTTTEEEEEETTTTEEEEEEE
T ss_pred             CCEEEEECCCCCeEEEEECCCCeEEEEEECCC---Cc--cceEECC----CCCEEEEEECCCCEEEEEECCCCeEEEEEe
Confidence            33565666555689999999887654322111   11  2333331    1124444443 3569999998765422111


Q ss_pred             CCCCcccCcccccccceEEE--CC-EEEEEEcCCCeEEEEECCCCeEEEeecCCCCCCCCceEEEE-CCeEEEEEEEeeC
Q 012227          293 MPSNIKLPVSLNFRSQAVSV--DG-ILYFMRSDPEGIVSYNMVTGVWKQFIIPTPLHLNDHTLAEC-GGRIMLVGLLTKN  368 (468)
Q Consensus       293 ~p~~~~~~~~~~~~~~~v~~--~G-~lY~~~~~~~~i~~fD~~~~~w~~i~~P~p~~~~~~~l~~~-~G~L~lv~~~~~~  368 (468)
                      ...          ....+.+  +| .+|+.+.....|..+|+.+.+.... ++....  ...+... +|+..++..   .
T Consensus       114 ~~~----------~~~~~~~s~dg~~l~~~~~~~~~v~~~d~~~~~~~~~-~~~~~~--~~~~~~~~dg~~l~~~~---~  177 (391)
T 1l0q_A          114 TGK----------SPLGLALSPDGKKLYVTNNGDKTVSVINTVTKAVINT-VSVGRS--PKGIAVTPDGTKVYVAN---F  177 (391)
T ss_dssp             CSS----------SEEEEEECTTSSEEEEEETTTTEEEEEETTTTEEEEE-EECCSS--EEEEEECTTSSEEEEEE---T
T ss_pred             CCC----------CcceEEECCCCCEEEEEeCCCCEEEEEECCCCcEEEE-EecCCC--cceEEECCCCCEEEEEe---C
Confidence            000          1112323  44 4667776667899999998876543 222211  1122222 454433332   1


Q ss_pred             CccEEEEEEEecCCCCeEEEEeeChhhhhcccCcceEEEEEe-cCCEEEEEeeeCCCCeEEEEECCCCcEE
Q 012227          369 AATCVCIWELQKMTLLWKEVDRMPNIWCLDFYGKHVRMTCLG-NKGLLMLSLRSRQMNRLVTYNVMSREWL  438 (468)
Q Consensus       369 ~~~~i~Vw~ld~~~~~W~~v~~mp~~~~~~~~~~~~~~~~~~-~~~~I~~~~~~~~~~~l~~YD~~t~~w~  438 (468)
                      ....+.+|.+.  +.  +.+..++...       ...-.++. .+..|++.......+.+.+||+.+++..
T Consensus       178 ~~~~v~~~d~~--~~--~~~~~~~~~~-------~~~~~~~~~~g~~l~~~~~~~~~~~v~~~d~~~~~~~  237 (391)
T 1l0q_A          178 DSMSISVIDTV--TN--SVIDTVKVEA-------APSGIAVNPEGTKAYVTNVDKYFNTVSMIDTGTNKIT  237 (391)
T ss_dssp             TTTEEEEEETT--TT--EEEEEEECSS-------EEEEEEECTTSSEEEEEEECSSCCEEEEEETTTTEEE
T ss_pred             CCCEEEEEECC--CC--eEEEEEecCC-------CccceEECCCCCEEEEEecCcCCCcEEEEECCCCeEE
Confidence            23467777443  22  2222222110       01112233 4456655432113568899999877543

>2aq5_A Coronin-1A; WD40 repeat, 7-bladed beta-propeller, structural protein; HET: CME; 1.75A {Mus musculus} PDB: 2b4e_A

Probab=95.08  E-value=2.4  Score=40.78  Aligned_cols=208  Identities=10%  Similarity=0.057  Sum_probs=98.0

Q ss_pred             CceEEEEEcCCceEEEEcCCCCceEecC-CC--CcCCcceeEEEEEEcCCCCCCCeEEEEEEecCcEEEEeCCCCCccCC
Q 012227          214 GGLVCFLDIGHRNFYVCNPLTQSFKELP-AR--SVKVWSRVAVGMTLNGNSTSSGYKILWVGCDGEYEIYDSLRNSWTRP  290 (468)
Q Consensus       214 ~GLl~~~~~~~~~~~V~NP~T~~~~~LP-~~--~~~~~~~~~~~~~~d~~~~~~~ykVv~v~~~~~v~vy~s~t~~W~~~  290 (468)
                      +|-+++.......+.|||..++....-. ..  ...........+.+.+   .+...++..+.++.+.+||..++.....
T Consensus        93 ~~~~l~s~s~dg~v~vw~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~p---~~~~~l~s~~~dg~i~iwd~~~~~~~~~  169 (402)
T 2aq5_A           93 NDNVIASGSEDCTVMVWEIPDGGLVLPLREPVITLEGHTKRVGIVAWHP---TAQNVLLSAGCDNVILVWDVGTGAAVLT  169 (402)
T ss_dssp             CTTEEEEEETTSEEEEEECCTTCCSSCBCSCSEEEECCSSCEEEEEECS---SBTTEEEEEETTSCEEEEETTTTEEEEE
T ss_pred             CCCEEEEEeCCCeEEEEEccCCCCccccCCceEEecCCCCeEEEEEECc---CCCCEEEEEcCCCEEEEEECCCCCccEE
Confidence            5555555555568999998887432110 00  0000111122333331   1123444445566799999887654321


Q ss_pred             CCCCCCcccCcccccccceEEE--CCEEEEEEcCCCeEEEEECCCCeEEEeecCCCCCCCCceEEEE-CCeEEEEEEEee
Q 012227          291 GSMPSNIKLPVSLNFRSQAVSV--DGILYFMRSDPEGIVSYNMVTGVWKQFIIPTPLHLNDHTLAEC-GGRIMLVGLLTK  367 (468)
Q Consensus       291 ~~~p~~~~~~~~~~~~~~~v~~--~G~lY~~~~~~~~i~~fD~~~~~w~~i~~P~p~~~~~~~l~~~-~G~L~lv~~~~~  367 (468)
                      -..... .      ..-..+.+  +|.+.+.+.....|..||+.+.+-...............+.-. +|++++++. ..
T Consensus       170 ~~~~~~-~------~~v~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~g~-~~  241 (402)
T 2aq5_A          170 LGPDVH-P------DTIYSVDWSRDGALICTSCRDKRVRVIEPRKGTVVAEKDRPHEGTRPVHAVFVSEGKILTTGF-SR  241 (402)
T ss_dssp             ECTTTC-C------SCEEEEEECTTSSCEEEEETTSEEEEEETTTTEEEEEEECSSCSSSCCEEEECSTTEEEEEEE-CT
T ss_pred             EecCCC-C------CceEEEEECCCCCEEEEEecCCcEEEEeCCCCceeeeeccCCCCCcceEEEEcCCCcEEEEec-cC
Confidence            000000 0      01112223  5665566656678999999987654431122111111223322 677666552 11


Q ss_pred             CCccEEEEEEEecCCCCeEEEEeeChhhhhcccCcceEEEEEe-cCCEEEEEeeeCCCCeEEEEECCCCc--EEEccC
Q 012227          368 NAATCVCIWELQKMTLLWKEVDRMPNIWCLDFYGKHVRMTCLG-NKGLLMLSLRSRQMNRLVTYNVMSRE--WLKVPG  442 (468)
Q Consensus       368 ~~~~~i~Vw~ld~~~~~W~~v~~mp~~~~~~~~~~~~~~~~~~-~~~~I~~~~~~~~~~~l~~YD~~t~~--w~~v~~  442 (468)
                      .....+.||.+......-. ...+...      .. ....++. ++..+++..  ...+.+.+||+.+++  ...+..
T Consensus       242 ~~d~~i~iwd~~~~~~~~~-~~~~~~~------~~-v~~~~~s~~~~~l~~~g--~~dg~i~i~d~~~~~~~~~~l~~  309 (402)
T 2aq5_A          242 MSERQVALWDTKHLEEPLS-LQELDTS------SG-VLLPFFDPDTNIVYLCG--KGDSSIRYFEITSEAPFLHYLSM  309 (402)
T ss_dssp             TCCEEEEEEETTBCSSCSE-EEECCCC------SS-CEEEEEETTTTEEEEEE--TTCSCEEEEEECSSTTCEEEEEE
T ss_pred             CCCceEEEEcCccccCCce-EEeccCC------Cc-eeEEEEcCCCCEEEEEE--cCCCeEEEEEecCCCcceEeecc
Confidence            2236788896654322111 1111110      00 1112233 455665432  235689999999887  555544

>1ijq_A LDL receptor, low-density lipoprotein receptor; beta-propeller, lipid transport; 1.50A {Homo sapiens} SCOP: b.68.5.1 g.3.11.1

Probab=95.07  E-value=2.3  Score=39.89  Aligned_cols=192  Identities=11%  Similarity=0.083  Sum_probs=95.8

Q ss_pred             eeecCceEEEEEcCCceEEEEcCCC----CceE-ecCCCCcCCcceeEEEEEEcCCCCCCCeEEEEEEe-cCcEEEEeCC
Q 012227          210 VASAGGLVCFLDIGHRNFYVCNPLT----QSFK-ELPARSVKVWSRVAVGMTLNGNSTSSGYKILWVGC-DGEYEIYDSL  283 (468)
Q Consensus       210 ~~s~~GLl~~~~~~~~~~~V~NP~T----~~~~-~LP~~~~~~~~~~~~~~~~d~~~~~~~ykVv~v~~-~~~v~vy~s~  283 (468)
                      ....+|.|++.+....+++++++.+    .... .++. ...  ..  .++.+|  ..  .-+||+... ...+.+++..
T Consensus        37 ~d~~~~~ly~~D~~~~~I~~~~~~g~~~~~~~~~~~~~-~~~--~p--~glavd--~~--~~~ly~~d~~~~~I~~~~~~  107 (316)
T 1ijq_A           37 TEVASNRIYWSDLSQRMICSTQLDRAHGVSSYDTVISR-DIQ--AP--DGLAVD--WI--HSNIYWTDSVLGTVSVADTK  107 (316)
T ss_dssp             EETTTTEEEEEETTTTEEEEEEC--------CEEEECS-SCS--CC--CEEEEE--TT--TTEEEEEETTTTEEEEEETT
T ss_pred             EEeCCCEEEEEECCCCcEEEEECCCCCCCcccEEEEeC-CCC--Cc--CEEEEe--ec--CCeEEEEECCCCEEEEEeCC
Confidence            4446788999888777899999876    2222 2321 111  11  234444  11  236666543 3458888876


Q ss_pred             CCCccCCCCCCCCcccCcccccccceEEE---CCEEEEEEcCC-CeEEEEECCCCeEEEeecCCCCCCCCceEEEE--CC
Q 012227          284 RNSWTRPGSMPSNIKLPVSLNFRSQAVSV---DGILYFMRSDP-EGIVSYNMVTGVWKQFIIPTPLHLNDHTLAEC--GG  357 (468)
Q Consensus       284 t~~W~~~~~~p~~~~~~~~~~~~~~~v~~---~G~lY~~~~~~-~~i~~fD~~~~~w~~i~~P~p~~~~~~~l~~~--~G  357 (468)
                      ...=+.+..  ....       ...++.+   +|.+||..... ..|..+|+....-..+ ..... ..-..++..  ++
T Consensus       108 g~~~~~~~~--~~~~-------~P~~iavdp~~g~ly~~d~~~~~~I~~~~~dG~~~~~~-~~~~~-~~P~gla~d~~~~  176 (316)
T 1ijq_A          108 GVKRKTLFR--ENGS-------KPRAIVVDPVHGFMYWTDWGTPAKIKKGGLNGVDIYSL-VTENI-QWPNGITLDLLSG  176 (316)
T ss_dssp             SSSEEEEEE--CTTC-------CEEEEEEETTTTEEEEEECSSSCEEEEEETTSCCEEEE-ECSSC-SCEEEEEEETTTT
T ss_pred             CCceEEEEE--CCCC-------CcceEEeCCCCCEEEEEccCCCCeEEEEcCCCCCeEEE-EECCC-CCceEEEEeccCC
Confidence            432111100  0001       1223333   68999988653 6899999976554433 11111 111234443  68


Q ss_pred             eEEEEEEEeeCCccEEEEEEEecCCCCeEEEEeeChhhhhcccCcceEEEEEecCCEEEEEeeeCCCCeEEEEECCCCc
Q 012227          358 RIMLVGLLTKNAATCVCIWELQKMTLLWKEVDRMPNIWCLDFYGKHVRMTCLGNKGLLMLSLRSRQMNRLVTYNVMSRE  436 (468)
Q Consensus       358 ~L~lv~~~~~~~~~~i~Vw~ld~~~~~W~~v~~mp~~~~~~~~~~~~~~~~~~~~~~I~~~~~~~~~~~l~~YD~~t~~  436 (468)
                      +||++...    ..  .|++++.....=..+...+...       ..+......++.||+..  ...+.|..+|..+++
T Consensus       177 ~lY~~D~~----~~--~I~~~d~dg~~~~~~~~~~~~~-------~~P~giav~~~~ly~~d--~~~~~V~~~~~~~g~  240 (316)
T 1ijq_A          177 RLYWVDSK----LH--SISSIDVNGGNRKTILEDEKRL-------AHPFSLAVFEDKVFWTD--IINEAIFSANRLTGS  240 (316)
T ss_dssp             EEEEEETT----TT--EEEEEETTSCSCEEEEECTTTT-------SSEEEEEEETTEEEEEE--TTTTEEEEEETTTCC
T ss_pred             EEEEEECC----CC--eEEEEecCCCceEEEeecCCcc-------CCcEEEEEECCEEEEEE--CCCCeEEEEeCCCCc
Confidence            89987532    23  4555565422222222211111       01222222468887743  345789999986554

>1rwi_B Serine/threonine-protein kinase PKND; beta propeller, structural genomics, PSI, protein structure initiative; 1.80A {Mycobacterium tuberculosis} SCOP: b.68.9.1 PDB: 1rwl_A

Probab=94.88  E-value=2  Score=38.49  Aligned_cols=193  Identities=10%  Similarity=0.036  Sum_probs=94.6

Q ss_pred             ecCceEEE-EEcCCceEEEEcCCCCceEecCCCCcCCcceeEEEEEEcCCCCCCCeEEEEEEecCcEEEEeCCCCCccCC
Q 012227          212 SAGGLVCF-LDIGHRNFYVCNPLTQSFKELPARSVKVWSRVAVGMTLNGNSTSSGYKILWVGCDGEYEIYDSLRNSWTRP  290 (468)
Q Consensus       212 s~~GLl~~-~~~~~~~~~V~NP~T~~~~~LP~~~~~~~~~~~~~~~~d~~~~~~~ykVv~v~~~~~v~vy~s~t~~W~~~  290 (468)
                      ..+|-+++ .+.....+.++|+-++....++.....  ..  .++.++  +.   .++++....+.+.+|+..++.-...
T Consensus        32 ~~~g~l~v~~~~~~~~i~~~~~~~~~~~~~~~~~~~--~p--~~i~~~--~~---g~l~v~~~~~~i~~~d~~~~~~~~~  102 (270)
T 1rwi_B           32 DSAGNVYVTSEGMYGRVVKLATGSTGTTVLPFNGLY--QP--QGLAVD--GA---GTVYVTDFNNRVVTLAAGSNNQTVL  102 (270)
T ss_dssp             CTTCCEEEEECSSSCEEEEECC-----EECCCCSCC--SC--CCEEEC--TT---CCEEEEETTTEEEEECTTCSCCEEC
T ss_pred             CCCCCEEEEccCCCCcEEEecCCCcccceEeeCCcC--Cc--ceeEEC--CC---CCEEEEcCCCEEEEEeCCCceEeee
Confidence            35666777 655556899999988776665432211  11  234444  21   2355554445688998876543322


Q ss_pred             CCCCCCcccCcccccccceEEE--CCEEEEEEcCCCeEEEEECCCCeEEEeecCCCCCCCCceEEEE-CCeEEEEEEEee
Q 012227          291 GSMPSNIKLPVSLNFRSQAVSV--DGILYFMRSDPEGIVSYNMVTGVWKQFIIPTPLHLNDHTLAEC-GGRIMLVGLLTK  367 (468)
Q Consensus       291 ~~~p~~~~~~~~~~~~~~~v~~--~G~lY~~~~~~~~i~~fD~~~~~w~~i~~P~p~~~~~~~l~~~-~G~L~lv~~~~~  367 (468)
                      ...  ...       ...++.+  +|.+|+.......|..||..+......  .......-..++.. +|+||+....  
T Consensus       103 ~~~--~~~-------~p~~i~~~~~g~l~v~~~~~~~i~~~~~~~~~~~~~--~~~~~~~p~~i~~~~~g~l~v~~~~--  169 (270)
T 1rwi_B          103 PFD--GLN-------YPEGLAVDTQGAVYVADRGNNRVVKLAAGSKTQTVL--PFTGLNDPDGVAVDNSGNVYVTDTD--  169 (270)
T ss_dssp             CCC--SCS-------SEEEEEECTTCCEEEEEGGGTEEEEECTTCCSCEEC--CCCSCCSCCCEEECTTCCEEEEEGG--
T ss_pred             ecC--CcC-------CCcceEECCCCCEEEEECCCCEEEEEECCCceeEee--ccccCCCceeEEEeCCCCEEEEECC--
Confidence            110  000       1123333  688888776556899998776554332  11111111234443 6888876421  


Q ss_pred             CCccEEEEEEEecCCCCeEEEEeeChhhhhcccCcceEEEEEecCCEEEEEeeeCCCCeEEEEECCCCcEEEc
Q 012227          368 NAATCVCIWELQKMTLLWKEVDRMPNIWCLDFYGKHVRMTCLGNKGLLMLSLRSRQMNRLVTYNVMSREWLKV  440 (468)
Q Consensus       368 ~~~~~i~Vw~ld~~~~~W~~v~~mp~~~~~~~~~~~~~~~~~~~~~~I~~~~~~~~~~~l~~YD~~t~~w~~v  440 (468)
                        ..  .|.+++.....-... ... .    +  ....-.++..+|.||+..  ...+.+..||++++....+
T Consensus       170 --~~--~i~~~~~~~~~~~~~-~~~-~----~--~~p~~i~~d~~g~l~v~~--~~~~~v~~~~~~~~~~~~~  228 (270)
T 1rwi_B          170 --NN--RVVKLEAESNNQVVL-PFT-D----I--TAPWGIAVDEAGTVYVTE--HNTNQVVKLLAGSTTSTVL  228 (270)
T ss_dssp             --GT--EEEEECTTTCCEEEC-CCS-S----C--CSEEEEEECTTCCEEEEE--TTTSCEEEECTTCSCCEEC
T ss_pred             --CC--EEEEEecCCCceEee-ccc-C----C--CCceEEEECCCCCEEEEE--CCCCcEEEEcCCCCcceee
Confidence              12  344556543321111 000 0    0  001122344456787643  2346799999988765543

>1q7f_A NHL, brain tumor CG10719-PA; BRAT, NHL domain, NHL repeat, beta-propeller, translation; 1.95A {Drosophila melanogaster} SCOP: b.68.9.1

Probab=94.88  E-value=2.2  Score=38.75  Aligned_cols=200  Identities=10%  Similarity=0.083  Sum_probs=99.7

Q ss_pred             ecCceEEEEEcCCceEEEEcCCCCceEecCCCCcC-CcceeEEEEEEcCCCCCCCeEEEEEEe--cCcEEEEeCCCCCcc
Q 012227          212 SAGGLVCFLDIGHRNFYVCNPLTQSFKELPARSVK-VWSRVAVGMTLNGNSTSSGYKILWVGC--DGEYEIYDSLRNSWT  288 (468)
Q Consensus       212 s~~GLl~~~~~~~~~~~V~NP~T~~~~~LP~~~~~-~~~~~~~~~~~d~~~~~~~ykVv~v~~--~~~v~vy~s~t~~W~  288 (468)
                      ..+|-+++.+.....+.++|+..+....++..... .......++.++  .  .+.++++...  ...+.+|+.....-.
T Consensus        38 ~~~g~l~v~~~~~~~i~~~d~~g~~~~~~~~~~~~~~~~~~p~~i~~~--~--~~g~l~v~~~~~~~~i~~~d~~g~~~~  113 (286)
T 1q7f_A           38 NAQNDIIVADTNNHRIQIFDKEGRFKFQFGECGKRDSQLLYPNRVAVV--R--NSGDIIVTERSPTHQIQIYNQYGQFVR  113 (286)
T ss_dssp             CTTCCEEEEEGGGTEEEEECTTSCEEEEECCBSSSTTCBSSEEEEEEE--T--TTTEEEEEECGGGCEEEEECTTSCEEE
T ss_pred             CCCCCEEEEECCCCEEEEECCCCcEEEEecccCCCcccccCceEEEEE--c--CCCeEEEEcCCCCCEEEEECCCCcEEE
Confidence            34677777766566899999886555555432110 001122344442  1  1235665553  456888984432211


Q ss_pred             CCCCCCCCcccCcccccccceEEE--CCEEEEEEcCCCeEEEEECCCCeEEEeecCCCCCCCCc-eEEEE-CCeEEEEEE
Q 012227          289 RPGSMPSNIKLPVSLNFRSQAVSV--DGILYFMRSDPEGIVSYNMVTGVWKQFIIPTPLHLNDH-TLAEC-GGRIMLVGL  364 (468)
Q Consensus       289 ~~~~~p~~~~~~~~~~~~~~~v~~--~G~lY~~~~~~~~i~~fD~~~~~w~~i~~P~p~~~~~~-~l~~~-~G~L~lv~~  364 (468)
                      .+.. . ...       ...++.+  +|.+|+.......|..||...+....+..+  .....+ .++.. +|+||+...
T Consensus       114 ~~~~-~-~~~-------~~~~i~~~~~g~l~v~~~~~~~i~~~~~~g~~~~~~~~~--~~~~~p~~i~~~~~g~l~v~~~  182 (286)
T 1q7f_A          114 KFGA-T-ILQ-------HPRGVTVDNKGRIIVVECKVMRVIIFDQNGNVLHKFGCS--KHLEFPNGVVVNDKQEIFISDN  182 (286)
T ss_dssp             EECT-T-TCS-------CEEEEEECTTSCEEEEETTTTEEEEECTTSCEEEEEECT--TTCSSEEEEEECSSSEEEEEEG
T ss_pred             EecC-c-cCC-------CceEEEEeCCCCEEEEECCCCEEEEEcCCCCEEEEeCCC--CccCCcEEEEECCCCCEEEEEC
Confidence            1111 0 000       1123333  688888776667899999877665554322  111222 23332 688887542


Q ss_pred             EeeCCccEEEEEEEecCCCCeEEEEeeChhhhhcccCcceEEEEEecCCEEEEEeeeCCCC-eEEEEECCCCcEEEcc
Q 012227          365 LTKNAATCVCIWELQKMTLLWKEVDRMPNIWCLDFYGKHVRMTCLGNKGLLMLSLRSRQMN-RLVTYNVMSREWLKVP  441 (468)
Q Consensus       365 ~~~~~~~~i~Vw~ld~~~~~W~~v~~mp~~~~~~~~~~~~~~~~~~~~~~I~~~~~~~~~~-~l~~YD~~t~~w~~v~  441 (468)
                      .    ...+.+|  +.. ...  +..+...-  .+.  ...-.++..+|.||+...  ..+ .|.+||.+.+....+.
T Consensus       183 ~----~~~i~~~--~~~-g~~--~~~~~~~g--~~~--~p~~i~~d~~G~l~v~~~--~~~~~i~~~~~~g~~~~~~~  245 (286)
T 1q7f_A          183 R----AHCVKVF--NYE-GQY--LRQIGGEG--ITN--YPIGVGINSNGEILIADN--HNNFNLTIFTQDGQLISALE  245 (286)
T ss_dssp             G----GTEEEEE--ETT-CCE--EEEESCTT--TSC--SEEEEEECTTCCEEEEEC--SSSCEEEEECTTSCEEEEEE
T ss_pred             C----CCEEEEE--cCC-CCE--EEEEccCC--ccC--CCcEEEECCCCCEEEEeC--CCCEEEEEECCCCCEEEEEc
Confidence            1    2344554  543 222  22222110  000  011234444667776432  233 8999998877666553

>1ri6_A Putative isomerase YBHE; 7-bladed propeller, enzyme, PSI, protein structure initiative, NEW YORK SGX research center for structural genomics; 2.00A {Escherichia coli} SCOP: b.69.11.1

Probab=94.67  E-value=1.9  Score=39.89  Aligned_cols=205  Identities=7%  Similarity=0.029  Sum_probs=98.6

Q ss_pred             cCceEEEEEcCCceEEEEcCC---CCceEe-cCCCCcCCcceeEEEEEEcCCCCCCCeEEEEEE-ecCcEEEEeCCC-CC
Q 012227          213 AGGLVCFLDIGHRNFYVCNPL---TQSFKE-LPARSVKVWSRVAVGMTLNGNSTSSGYKILWVG-CDGEYEIYDSLR-NS  286 (468)
Q Consensus       213 ~~GLl~~~~~~~~~~~V~NP~---T~~~~~-LP~~~~~~~~~~~~~~~~d~~~~~~~ykVv~v~-~~~~v~vy~s~t-~~  286 (468)
                      .+..|++.......+.+||..   +.+... ++...    ...  ++.+++   .+ -.+++.. .++.+.+|+..+ ++
T Consensus        94 dg~~l~~~~~~~~~i~~~d~~~~~~~~~~~~~~~~~----~~~--~~~~s~---dg-~~l~~~~~~~~~v~~~d~~~~~~  163 (343)
T 1ri6_A           94 QGQFVFVGSYNAGNVSVTRLEDGLPVGVVDVVEGLD----GCH--SANISP---DN-RTLWVPALKQDRICLFTVSDDGH  163 (343)
T ss_dssp             TSSEEEEEETTTTEEEEEEEETTEEEEEEEEECCCT----TBC--CCEECT---TS-SEEEEEEGGGTEEEEEEECTTSC
T ss_pred             CCCEEEEEecCCCeEEEEECCCCccccccccccCCC----Cce--EEEECC---CC-CEEEEecCCCCEEEEEEecCCCc
Confidence            333565665555678888873   322221 22111    111  122331   11 2344444 456799999876 55


Q ss_pred             ccCCC--CCCCCcccCcccccccceEEE--CCE-EEEEEcCCCeEEEEECC--CCeEEE---ee-cCCCCC-CCCc-eEE
Q 012227          287 WTRPG--SMPSNIKLPVSLNFRSQAVSV--DGI-LYFMRSDPEGIVSYNMV--TGVWKQ---FI-IPTPLH-LNDH-TLA  353 (468)
Q Consensus       287 W~~~~--~~p~~~~~~~~~~~~~~~v~~--~G~-lY~~~~~~~~i~~fD~~--~~~w~~---i~-~P~p~~-~~~~-~l~  353 (468)
                      .....  .....    .  ......+.+  +|. +|+.......|..||+.  ++++..   +. +|.... .... .+.
T Consensus       164 ~~~~~~~~~~~~----~--~~~~~~~~~~pdg~~l~~~~~~~~~i~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~i~  237 (343)
T 1ri6_A          164 LVAQDPAEVTTV----E--GAGPRHMVFHPNEQYAYCVNELNSSVDVWELKDPHGNIECVQTLDMMPENFSDTRWAADIH  237 (343)
T ss_dssp             EEEEEEEEEECS----T--TCCEEEEEECTTSSEEEEEETTTTEEEEEESSCTTSCCEEEEEEECSCTTCCSCCCEEEEE
T ss_pred             eeeecccccccC----C--CCCcceEEECCCCCEEEEEeCCCCEEEEEEecCCCCcEEEEeeccccCccccccCCccceE
Confidence            53221  00000    0  000112223  454 67766556789999984  344432   21 222111 1111 222


Q ss_pred             EE-CCeEEEEEEEeeCCccEEEEEEEecCCCCeEEEEeeChhhhhcccCcceEEEEEe-cCCEEEEEeeeCCCCeEEEE-
Q 012227          354 EC-GGRIMLVGLLTKNAATCVCIWELQKMTLLWKEVDRMPNIWCLDFYGKHVRMTCLG-NKGLLMLSLRSRQMNRLVTY-  430 (468)
Q Consensus       354 ~~-~G~L~lv~~~~~~~~~~i~Vw~ld~~~~~W~~v~~mp~~~~~~~~~~~~~~~~~~-~~~~I~~~~~~~~~~~l~~Y-  430 (468)
                      .. +|+..++..   .....+.+|.++..+..++.+..++....       ..-.++. ++..||+..  ...+.+.+| 
T Consensus       238 ~s~dg~~l~v~~---~~~~~i~v~d~~~~~~~~~~~~~~~~~~~-------~~~~~~s~dg~~l~~~~--~~~~~v~v~~  305 (343)
T 1ri6_A          238 ITPDGRHLYACD---RTASLITVFSVSEDGSVLSKEGFQPTETQ-------PRGFNVDHSGKYLIAAG--QKSHHISVYE  305 (343)
T ss_dssp             ECTTSSEEEEEE---TTTTEEEEEEECTTSCCEEEEEEEECSSS-------CCCEEECTTSSEEEEEC--TTTCEEEEEE
T ss_pred             ECCCCCEEEEEe---cCCCEEEEEEEcCCCCceEEeeeecCCCc-------cceEEECCCCCEEEEec--CCCCeEEEEE
Confidence            22 465444332   22367899988865667777766643211       0112333 455666543  223566666 


Q ss_pred             -ECCCCcEEEccCCcc
Q 012227          431 -NVMSREWLKVPGCVV  445 (468)
Q Consensus       431 -D~~t~~w~~v~~~~~  445 (468)
                       |.++++++.+...+.
T Consensus       306 ~d~~~g~~~~~~~~~~  321 (343)
T 1ri6_A          306 IVGEQGLLHEKGRYAV  321 (343)
T ss_dssp             EETTTTEEEEEEEEEC
T ss_pred             EcCCCceeeEcccccc
Confidence             777888888866554

>3jro_A Fusion protein of protein transport protein SEC13 nucleoporin NUP145; protein complex, cytoplasmic vesicle, endoplasmic reticulum, transport, membrane, mRNA transport; 4.00A {Saccharomyces cerevisiae}

Probab=94.44  E-value=0.6  Score=49.83  Aligned_cols=187  Identities=12%  Similarity=0.101  Sum_probs=91.1

Q ss_pred             CceEEEEcCCCCceEecCCCCcCCcceeEEEEEEcCCCCCCCeEEEEEEecCcEEEEeCCCCCccCCCCCCCCcccCccc
Q 012227          224 HRNFYVCNPLTQSFKELPARSVKVWSRVAVGMTLNGNSTSSGYKILWVGCDGEYEIYDSLRNSWTRPGSMPSNIKLPVSL  303 (468)
Q Consensus       224 ~~~~~V~NP~T~~~~~LP~~~~~~~~~~~~~~~~d~~~~~~~ykVv~v~~~~~v~vy~s~t~~W~~~~~~p~~~~~~~~~  303 (468)
                      .+.+.|||..++++..+.....+....  .++.+.  +..+.-.++..+.++.+.+||..++.|..+........     
T Consensus        30 dg~I~vwd~~~~~~~~~~~l~~h~~~V--~~l~~s--~~~~~~~l~s~s~Dg~I~vwd~~~~~~~~~~~~~~h~~-----  100 (753)
T 3jro_A           30 DKTIKIFEVEGETHKLIDTLTGHEGPV--WRVDWA--HPKFGTILASCSYDGKVLIWKEENGRWSQIAVHAVHSA-----  100 (753)
T ss_dssp             TTEEEEEEEETTEEEEEEEECCCSSCE--EEEEEC--CTTSCSEEEEEETTSCEEEEEEETTEEEEEEEECCCSS-----
T ss_pred             CCcEEEEecCCCCCccceeccCCcCce--EEEEec--CCCCCCEEEEEeCCCeEEEEECCCCcccccccccCCCC-----
Confidence            346777777655544433222222222  233333  22223455555556779999998887754432221100     


Q ss_pred             ccccceEEE--C--CEEEEEEcCCCeEEEEECCCCeEE-EeecCCCCCCCCceEEEE---------------CCeEEEEE
Q 012227          304 NFRSQAVSV--D--GILYFMRSDPEGIVSYNMVTGVWK-QFIIPTPLHLNDHTLAEC---------------GGRIMLVG  363 (468)
Q Consensus       304 ~~~~~~v~~--~--G~lY~~~~~~~~i~~fD~~~~~w~-~i~~P~p~~~~~~~l~~~---------------~G~L~lv~  363 (468)
                        .-..+.+  +  |.+.+.+...+.|..||+.+..-. .....  .+......+..               +|.+.+++
T Consensus       101 --~V~~v~~sp~~~~~~l~sgs~dg~I~vwdl~~~~~~~~~~~~--~~~~~v~~l~~~p~~~~~~~~~~~~~d~~~l~sg  176 (753)
T 3jro_A          101 --SVNSVQWAPHEYGPLLLVASSDGKVSVVEFKENGTTSPIIID--AHAIGVNSASWAPATIEEDGEHNGTKESRKFVTG  176 (753)
T ss_dssp             --CEEEEEECCGGGCSEEEEEETTSEEEEEECCSSSCCCCEEEE--CCSSCEEEEEECCCC---------CGGGCCEEEE
T ss_pred             --CeEEEEECCCCCCCEEEEEeCCCcEEEEEeecCCCcceeEee--cCCCceEEEEecCcccccccccccCCCCCEEEEE
Confidence              1112223  2  556666666678889998765211 11010  01111111111               35555554


Q ss_pred             EEeeCCccEEEEEEEecCCCCeEEEEeeChhhhhcccCcceEEEEEecC---CEEEEEeeeCCCCeEEEEECCCC
Q 012227          364 LLTKNAATCVCIWELQKMTLLWKEVDRMPNIWCLDFYGKHVRMTCLGNK---GLLMLSLRSRQMNRLVTYNVMSR  435 (468)
Q Consensus       364 ~~~~~~~~~i~Vw~ld~~~~~W~~v~~mp~~~~~~~~~~~~~~~~~~~~---~~I~~~~~~~~~~~l~~YD~~t~  435 (468)
                      ..    ...+.+|.+......+..+..+....     + .+.-.++..+   +.+++...  ..+.+.+||+.++
T Consensus       177 s~----dg~I~iwd~~~~~~~~~~~~~~~~h~-----~-~V~~l~~sp~~~~~~~l~s~s--~Dg~I~iwd~~~~  239 (753)
T 3jro_A          177 GA----DNLVKIWKYNSDAQTYVLESTLEGHS-----D-WVRDVAWSPTVLLRSYLASVS--QDRTCIIWTQDNE  239 (753)
T ss_dssp             ET----TSCEEEEEEETTTTEEEEEEEECCCS-----S-CEEEEEECCCCSSSEEEEEEE--SSSCEEEEEESSS
T ss_pred             EC----CCeEEEEeccCCcccceeeeeecCCC-----C-cEEEEEeccCCCCCCEEEEEe--cCCEEEEecCCCC
Confidence            32    24689999887666676665553211     0 0111122223   45544332  3467888988875

>2iwa_A Glutamine cyclotransferase; pyroglutamate, acyltransferase, glutaminyl CYCL N-terminal cyclisation; HET: NAG; 1.6A {Carica papaya} PDB: 2faw_A*

Probab=94.44  E-value=2.3  Score=38.98  Aligned_cols=160  Identities=10%  Similarity=-0.003  Sum_probs=86.4

Q ss_pred             EEEEEcCCCCCCCeEEEEEEec---CcEEEEeCCCCCccCCCCCCCCcccCcccccccceEEECCEEEEEEcCCCeEEEE
Q 012227          253 VGMTLNGNSTSSGYKILWVGCD---GEYEIYDSLRNSWTRPGSMPSNIKLPVSLNFRSQAVSVDGILYFMRSDPEGIVSY  329 (468)
Q Consensus       253 ~~~~~d~~~~~~~ykVv~v~~~---~~v~vy~s~t~~W~~~~~~p~~~~~~~~~~~~~~~v~~~G~lY~~~~~~~~i~~f  329 (468)
                      -|+.+++  .   .++++..+.   ..+.++|..+++=...-.++..       .+.......++.+|+.....+.+.+|
T Consensus        24 ~Gl~~~~--d---g~Lyvstg~~~~s~v~~iD~~tg~v~~~i~l~~~-------~fgeGi~~~g~~lyv~t~~~~~v~vi   91 (266)
T 2iwa_A           24 QGLVYAE--N---DTLFESTGLYGRSSVRQVALQTGKVENIHKMDDS-------YFGEGLTLLNEKLYQVVWLKNIGFIY   91 (266)
T ss_dssp             EEEEECS--T---TEEEEEECSTTTCEEEEEETTTCCEEEEEECCTT-------CCEEEEEEETTEEEEEETTCSEEEEE
T ss_pred             ccEEEeC--C---CeEEEECCCCCCCEEEEEECCCCCEEEEEecCCC-------cceEEEEEeCCEEEEEEecCCEEEEE
Confidence            4566652  1   267765542   4599999998763221111111       11122334577999999877899999


Q ss_pred             ECCCCeEEEeecCCCCCCCCceEEEECCeEEEEEEEeeCCccEEEEEEEecCCCCeEEEEeeChhhhhcccCcceEEEEE
Q 012227          330 NMVTGVWKQFIIPTPLHLNDHTLAECGGRIMLVGLLTKNAATCVCIWELQKMTLLWKEVDRMPNIWCLDFYGKHVRMTCL  409 (468)
Q Consensus       330 D~~~~~w~~i~~P~p~~~~~~~l~~~~G~L~lv~~~~~~~~~~i~Vw~ld~~~~~W~~v~~mp~~~~~~~~~~~~~~~~~  409 (468)
                      |+.+.+-..- +|.+ ......+..-+++||+..+     ..  .|+.+|..+.  +.+..++.............+.+.
T Consensus        92 D~~t~~v~~~-i~~g-~~~g~glt~Dg~~l~vs~g-----s~--~l~viD~~t~--~v~~~I~Vg~~~~p~~~~nele~~  160 (266)
T 2iwa_A           92 DRRTLSNIKN-FTHQ-MKDGWGLATDGKILYGSDG-----TS--ILYEIDPHTF--KLIKKHNVKYNGHRVIRLNELEYI  160 (266)
T ss_dssp             ETTTTEEEEE-EECC-SSSCCEEEECSSSEEEECS-----SS--EEEEECTTTC--CEEEEEECEETTEECCCEEEEEEE
T ss_pred             ECCCCcEEEE-EECC-CCCeEEEEECCCEEEEECC-----CC--eEEEEECCCC--cEEEEEEECCCCcccccceeEEEE
Confidence            9998654332 3333 1122334433556775431     12  6778887543  444444422111000001123333


Q ss_pred             ecCCEEEEEeeeCCCCeEEEEECCCCcEEE
Q 012227          410 GNKGLLMLSLRSRQMNRLVTYNVMSREWLK  439 (468)
Q Consensus       410 ~~~~~I~~~~~~~~~~~l~~YD~~t~~w~~  439 (468)
                        ++.||+..  ...+.+.+-|+++++...
T Consensus       161 --dg~lyvn~--~~~~~V~vID~~tg~V~~  186 (266)
T 2iwa_A          161 --NGEVWANI--WQTDCIARISAKDGTLLG  186 (266)
T ss_dssp             --TTEEEEEE--TTSSEEEEEETTTCCEEE
T ss_pred             --CCEEEEec--CCCCeEEEEECCCCcEEE
Confidence              57888643  345789999999987543

>3p5b_L Low density lipoprotein receptor variant; B-propellor, convertase, hydrolase-lipid binding P complex; 3.30A {Homo sapiens} PDB: 3p5c_L

Probab=94.42  E-value=4  Score=39.73  Aligned_cols=192  Identities=12%  Similarity=0.106  Sum_probs=96.5

Q ss_pred             eeecCceEEEEEcCCceEEEEcCCCC----ceEecCCCCcCCcceeEEEEEEcCCCCCCCeEEEEEEec-CcEEEEeCCC
Q 012227          210 VASAGGLVCFLDIGHRNFYVCNPLTQ----SFKELPARSVKVWSRVAVGMTLNGNSTSSGYKILWVGCD-GEYEIYDSLR  284 (468)
Q Consensus       210 ~~s~~GLl~~~~~~~~~~~V~NP~T~----~~~~LP~~~~~~~~~~~~~~~~d~~~~~~~ykVv~v~~~-~~v~vy~s~t  284 (468)
                      +...+|.|++.+....+++.+++...    ....+.....    ....|+.+|  ..  .-+||+.... ..+++++...
T Consensus       119 ~d~~~~~lywsD~~~~~I~~~~~~g~~~~~~~~~~~~~~~----~~p~glavD--~~--~~~lY~~d~~~~~I~~~~~~g  190 (400)
T 3p5b_L          119 TEVASNRIYWSDLSQRMICSTQLDRAHGVSSYDTVISRDI----QAPDGLAVD--WI--HSNIYWTDSVLGTVSVADTKG  190 (400)
T ss_dssp             EETTTTEEEEEETTTTEEEEEEC------CCCEEEECSSC----SCEEEEEEE--TT--TTEEEEEETTTTEEEEECTTT
T ss_pred             eeeccCceEEEecCCCeEEEEEcccCCCCCcceEEEeCCC----CCcccEEEE--ec--CCceEEEECCCCeEEEEeCCC
Confidence            44467888888877778888888652    1222221111    123455566  21  2467766543 3488888765


Q ss_pred             CCccCCCCCCCCcccCcccccccceEEE---CCEEEEEEcC-CCeEEEEECCCCeEEEeecCCCCCCCCceEEEE--CCe
Q 012227          285 NSWTRPGSMPSNIKLPVSLNFRSQAVSV---DGILYFMRSD-PEGIVSYNMVTGVWKQFIIPTPLHLNDHTLAEC--GGR  358 (468)
Q Consensus       285 ~~W~~~~~~p~~~~~~~~~~~~~~~v~~---~G~lY~~~~~-~~~i~~fD~~~~~w~~i~~P~p~~~~~~~l~~~--~G~  358 (468)
                      ..-+.+..  ....       ...++.+   +|.|||.... ...|..+|+....-..+ ..... ..-..|+.-  +++
T Consensus       191 ~~~~~l~~--~~~~-------~P~~iavdp~~g~ly~td~~~~~~I~~~~~dG~~~~~~-~~~~l-~~P~glavd~~~~~  259 (400)
T 3p5b_L          191 VKRKTLFR--ENGS-------KPRAIVVDPVHGFMYWTDWGTPAKIKKGGLNGVDIYSL-VTENI-QWPNGITLDLLSGR  259 (400)
T ss_dssp             CSEEEEEE--CSSC-------CEEEEEEETTTTEEEEEECSSSCCEEEEETTSCSCEEE-ECSSC-SCEEEEEEETTTTE
T ss_pred             CceEEEEe--CCCC-------CcceEEEecccCeEEEEeCCCCCEEEEEeCCCCccEEE-EECCC-CceEEEEEEeCCCE
Confidence            43322210  0100       1223444   6899998753 36799999976543333 11111 111234444  789


Q ss_pred             EEEEEEEeeCCccEEEEEEEecCCCCeEEEEeeChhhhhcccCcceEEEEEecCCEEEEEeeeCCCCeEEEEECCCC
Q 012227          359 IMLVGLLTKNAATCVCIWELQKMTLLWKEVDRMPNIWCLDFYGKHVRMTCLGNKGLLMLSLRSRQMNRLVTYNVMSR  435 (468)
Q Consensus       359 L~lv~~~~~~~~~~i~Vw~ld~~~~~W~~v~~mp~~~~~~~~~~~~~~~~~~~~~~I~~~~~~~~~~~l~~YD~~t~  435 (468)
                      ||++...    ..  .|++++.....-..+...+..+.       .+......++.||+..  .....|..+|..++
T Consensus       260 lY~aD~~----~~--~I~~~d~dG~~~~~~~~~~~~l~-------~P~gl~v~~~~lywtd--~~~~~V~~~~~~~G  321 (400)
T 3p5b_L          260 LYWVDSK----LH--SISSIDVNGGNRKTILEDEKRLA-------HPFSLAVFEDKVFWTD--IINEAIFSANRLTG  321 (400)
T ss_dssp             EEEEETT----TT--EEEEEETTSCCCEEEEECSSTTS-------SEEEEEEETTEEEEEE--SSSCSEEEEESSSC
T ss_pred             EEEEECC----CC--EEEEEeCCCCccEEEEeCCCCCC-------CCEEEEEeCCEEEEec--CCCCeEEEEEcCCC
Confidence            9987532    22  56666654322222222111111       1222223567887643  33567888996554

>1npe_A Nidogen, entactin; glycoprotein, basement membrane, beta-propeller, EGF-like, structural protein; 2.30A {Mus musculus} SCOP: b.68.5.1

Probab=94.41  E-value=2.8  Score=37.85  Aligned_cols=195  Identities=11%  Similarity=0.072  Sum_probs=100.6

Q ss_pred             eeecCceEEEEEcCCceEEEEcCCCCceEecCCCCcCCcceeEEEEEEcCCCCCCCeEEEEEEec-CcEEEEeCCCCCcc
Q 012227          210 VASAGGLVCFLDIGHRNFYVCNPLTQSFKELPARSVKVWSRVAVGMTLNGNSTSSGYKILWVGCD-GEYEIYDSLRNSWT  288 (468)
Q Consensus       210 ~~s~~GLl~~~~~~~~~~~V~NP~T~~~~~LP~~~~~~~~~~~~~~~~d~~~~~~~ykVv~v~~~-~~v~vy~s~t~~W~  288 (468)
                      +...+|.|++.+....++.++++.++....+-....    ....++.+|+  .  ..++++.... ..+.+++.....-+
T Consensus        43 ~d~~~~~ly~~d~~~~~I~~~~~~g~~~~~~~~~~~----~~p~~ia~d~--~--~~~lyv~d~~~~~I~~~~~~g~~~~  114 (267)
T 1npe_A           43 FDCVDKVVYWTDISEPSIGRASLHGGEPTTIIRQDL----GSPEGIALDH--L--GRTIFWTDSQLDRIEVAKMDGTQRR  114 (267)
T ss_dssp             EETTTTEEEEEETTTTEEEEEESSSCCCEEEECTTC----CCEEEEEEET--T--TTEEEEEETTTTEEEEEETTSCSCE
T ss_pred             EecCCCEEEEEECCCCEEEEEecCCCCcEEEEECCC----CCccEEEEEe--c--CCeEEEEECCCCEEEEEEcCCCCEE
Confidence            444578888888777789999998765443322111    1123455552  1  2356655433 35888887543211


Q ss_pred             CCCCCCCCcccCcccccccceEEE---CCEEEEEEcC--CCeEEEEECCCCeEEEeecCCCCCCCCceEEEE--CCeEEE
Q 012227          289 RPGSMPSNIKLPVSLNFRSQAVSV---DGILYFMRSD--PEGIVSYNMVTGVWKQFIIPTPLHLNDHTLAEC--GGRIML  361 (468)
Q Consensus       289 ~~~~~p~~~~~~~~~~~~~~~v~~---~G~lY~~~~~--~~~i~~fD~~~~~w~~i~~P~p~~~~~~~l~~~--~G~L~l  361 (468)
                      .+.  +....       ....+.+   +|.+||....  ...|..+++....-..+ ..... ..-..++..  ++.||+
T Consensus       115 ~~~--~~~~~-------~P~~i~vd~~~g~lyv~~~~~~~~~I~~~~~dg~~~~~~-~~~~~-~~P~gia~d~~~~~lyv  183 (267)
T 1npe_A          115 VLF--DTGLV-------NPRGIVTDPVRGNLYWTDWNRDNPKIETSHMDGTNRRIL-AQDNL-GLPNGLTFDAFSSQLCW  183 (267)
T ss_dssp             EEE--CSSCS-------SEEEEEEETTTTEEEEEECCSSSCEEEEEETTSCCCEEE-ECTTC-SCEEEEEEETTTTEEEE
T ss_pred             EEE--ECCCC-------CccEEEEeeCCCEEEEEECCCCCcEEEEEecCCCCcEEE-EECCC-CCCcEEEEcCCCCEEEE
Confidence            111  00101       1223333   6899998754  45788999876544433 11111 111233433  568887


Q ss_pred             EEEEeeCCccEEEEEEEecCCCCeEEEEeeChhhhhcccCcceEEEEEecCCEEEEEeeeCCCCeEEEEECCCCcE-EEc
Q 012227          362 VGLLTKNAATCVCIWELQKMTLLWKEVDRMPNIWCLDFYGKHVRMTCLGNKGLLMLSLRSRQMNRLVTYNVMSREW-LKV  440 (468)
Q Consensus       362 v~~~~~~~~~~i~Vw~ld~~~~~W~~v~~mp~~~~~~~~~~~~~~~~~~~~~~I~~~~~~~~~~~l~~YD~~t~~w-~~v  440 (468)
                      +...    ..  .|++++.....-..+  +.        +...+......++.||+..  ...+.+.++|+++++. +.+
T Consensus       184 ~d~~----~~--~I~~~~~~g~~~~~~--~~--------~~~~P~gi~~d~~~lyva~--~~~~~v~~~d~~~g~~~~~i  245 (267)
T 1npe_A          184 VDAG----TH--RAECLNPAQPGRRKV--LE--------GLQYPFAVTSYGKNLYYTD--WKTNSVIAMDLAISKEMDTF  245 (267)
T ss_dssp             EETT----TT--EEEEEETTEEEEEEE--EE--------CCCSEEEEEEETTEEEEEE--TTTTEEEEEETTTTEEEEEE
T ss_pred             EECC----CC--EEEEEecCCCceEEE--ec--------CCCCceEEEEeCCEEEEEE--CCCCeEEEEeCCCCCceEEE
Confidence            6532    22  556666542211111  11        0011222223478888743  3356899999998764 444


Q ss_pred             c
Q 012227          441 P  441 (468)
Q Consensus       441 ~  441 (468)
                      +
T Consensus       246 ~  246 (267)
T 1npe_A          246 H  246 (267)
T ss_dssp             C
T ss_pred             c
Confidence            3

>1l0q_A Surface layer protein; SLP, S-layer, 7-bladed beta-propeller superfamily, protein binding; HET: YCM; 2.40A {Methanosarcina mazei} SCOP: b.1.3.1 b.69.2.3

Probab=94.41  E-value=1.4  Score=42.05  Aligned_cols=188  Identities=12%  Similarity=0.108  Sum_probs=93.4

Q ss_pred             ceEEEEEcCCceEEEEcCCCCceEecCCCCcCCcceeEEEEEEcCCCCCCCeEEEEEE-ecCcEEEEeCCCCCccCCCCC
Q 012227          215 GLVCFLDIGHRNFYVCNPLTQSFKELPARSVKVWSRVAVGMTLNGNSTSSGYKILWVG-CDGEYEIYDSLRNSWTRPGSM  293 (468)
Q Consensus       215 GLl~~~~~~~~~~~V~NP~T~~~~~LP~~~~~~~~~~~~~~~~d~~~~~~~ykVv~v~-~~~~v~vy~s~t~~W~~~~~~  293 (468)
                      +.+++.......+.+||..+++....-....   ..  .++.+.+    +.-.+++.+ .++.+.+||..+++-...-..
T Consensus         2 ~~l~vs~~~d~~v~v~d~~~~~~~~~~~~~~---~~--~~~~~s~----dg~~l~~~~~~d~~i~v~d~~~~~~~~~~~~   72 (391)
T 1l0q_A            2 TFAYIANSESDNISVIDVTSNKVTATIPVGS---NP--MGAVISP----DGTKVYVANAHSNDVSIIDTATNNVIATVPA   72 (391)
T ss_dssp             EEEEEEETTTTEEEEEETTTTEEEEEEECSS---SE--EEEEECT----TSSEEEEEEGGGTEEEEEETTTTEEEEEEEC
T ss_pred             CEEEEEcCCCCEEEEEECCCCeEEEEeecCC---Cc--ceEEECC----CCCEEEEECCCCCeEEEEECCCCeEEEEEEC
Confidence            3455666656789999998887654322111   11  2333331    122444444 456799999887654321110


Q ss_pred             CCCcccCcccccccceEEE--CC-EEEEEEcCCCeEEEEECCCCeEEEeecCCCCCCCCceEEEE-CCeEEEEEEEeeCC
Q 012227          294 PSNIKLPVSLNFRSQAVSV--DG-ILYFMRSDPEGIVSYNMVTGVWKQFIIPTPLHLNDHTLAEC-GGRIMLVGLLTKNA  369 (468)
Q Consensus       294 p~~~~~~~~~~~~~~~v~~--~G-~lY~~~~~~~~i~~fD~~~~~w~~i~~P~p~~~~~~~l~~~-~G~L~lv~~~~~~~  369 (468)
                      +.          ....+.+  +| .+|+.+.....|..||+.+++.... ++...  ....++.. +|+..++..   ..
T Consensus        73 ~~----------~v~~~~~spdg~~l~~~~~~~~~v~v~d~~~~~~~~~-~~~~~--~~~~~~~s~dg~~l~~~~---~~  136 (391)
T 1l0q_A           73 GS----------SPQGVAVSPDGKQVYVTNMASSTLSVIDTTSNTVAGT-VKTGK--SPLGLALSPDGKKLYVTN---NG  136 (391)
T ss_dssp             SS----------SEEEEEECTTSSEEEEEETTTTEEEEEETTTTEEEEE-EECSS--SEEEEEECTTSSEEEEEE---TT
T ss_pred             CC----------CccceEECCCCCEEEEEECCCCEEEEEECCCCeEEEE-EeCCC--CcceEEECCCCCEEEEEe---CC
Confidence            00          1112223  34 4666665557899999998876543 22211  11222222 565443332   22


Q ss_pred             ccEEEEEEEecCCCCeEEEEeeChhhhhcccCcceEEEEEe-cCCEEEEEeeeCCCCeEEEEECCCCcEEEc
Q 012227          370 ATCVCIWELQKMTLLWKEVDRMPNIWCLDFYGKHVRMTCLG-NKGLLMLSLRSRQMNRLVTYNVMSREWLKV  440 (468)
Q Consensus       370 ~~~i~Vw~ld~~~~~W~~v~~mp~~~~~~~~~~~~~~~~~~-~~~~I~~~~~~~~~~~l~~YD~~t~~w~~v  440 (468)
                      ...+.+|.+.  +.+..........         ....++. ++..|++..  ...+.+.+||+.+++....
T Consensus       137 ~~~v~~~d~~--~~~~~~~~~~~~~---------~~~~~~~~dg~~l~~~~--~~~~~v~~~d~~~~~~~~~  195 (391)
T 1l0q_A          137 DKTVSVINTV--TKAVINTVSVGRS---------PKGIAVTPDGTKVYVAN--FDSMSISVIDTVTNSVIDT  195 (391)
T ss_dssp             TTEEEEEETT--TTEEEEEEECCSS---------EEEEEECTTSSEEEEEE--TTTTEEEEEETTTTEEEEE
T ss_pred             CCEEEEEECC--CCcEEEEEecCCC---------cceEEECCCCCEEEEEe--CCCCEEEEEECCCCeEEEE
Confidence            3567777443  3333222221110         1122233 445665532  3356799999988865443

>3no2_A Uncharacterized protein; six-bladed beta-propeller, structural genomics, joint center structural genomics, JCSG, protein structure initiative; HET: MSE CIT PEG; 1.35A {Bacteroides caccae}

Probab=94.33  E-value=1.2  Score=41.08  Aligned_cols=187  Identities=14%  Similarity=0.158  Sum_probs=87.9

Q ss_pred             cCceEEEEEcCCceEEEEcCCCCceE-ecCCCCcCCcceeEEEEEEcCCCCCCCeEEEEEEecCcEEEEeCCCC--CccC
Q 012227          213 AGGLVCFLDIGHRNFYVCNPLTQSFK-ELPARSVKVWSRVAVGMTLNGNSTSSGYKILWVGCDGEYEIYDSLRN--SWTR  289 (468)
Q Consensus       213 ~~GLl~~~~~~~~~~~V~NP~T~~~~-~LP~~~~~~~~~~~~~~~~d~~~~~~~ykVv~v~~~~~v~vy~s~t~--~W~~  289 (468)
                      ..|-+++.+.....++++|+.|++.. .++....  .....+.+  .  +   +.++++ .....+..||+ ++  .|+.
T Consensus         3 ~~~~~lv~~~~~~~v~~~d~~tG~~~w~~~~~~~--~~~~~~~~--~--p---dG~ilv-s~~~~V~~~d~-~G~~~W~~   71 (276)
T 3no2_A            3 SPQHLLVGGSGWNKIAIINKDTKEIVWEYPLEKG--WECNSVAA--T--K---AGEILF-SYSKGAKMITR-DGRELWNI   71 (276)
T ss_dssp             CCCEEEEECTTCSEEEEEETTTTEEEEEEECCTT--CCCCEEEE--C--T---TSCEEE-ECBSEEEEECT-TSCEEEEE
T ss_pred             CCCcEEEeeCCCCEEEEEECCCCeEEEEeCCCcc--CCCcCeEE--C--C---CCCEEE-eCCCCEEEECC-CCCEEEEE
Confidence            34444555555568999999888744 2332110  01111222  2  1   134554 45566888988 44  3754


Q ss_pred             CCCCCCCcccCcccccccceEEECCEEEEEEcC-CCeEEEEECCCCeEEEeecCCCC--CCCC-ceE-EEECCeEEEEEE
Q 012227          290 PGSMPSNIKLPVSLNFRSQAVSVDGILYFMRSD-PEGIVSYNMVTGVWKQFIIPTPL--HLND-HTL-AECGGRIMLVGL  364 (468)
Q Consensus       290 ~~~~p~~~~~~~~~~~~~~~v~~~G~lY~~~~~-~~~i~~fD~~~~~w~~i~~P~p~--~~~~-~~l-~~~~G~L~lv~~  364 (468)
                      -..  ...      ........-+|.+++.... ...++.+|+..+....+.+....  .... ..+ ...+|.++++..
T Consensus        72 ~~~--~~~------~~~~~~~~~dG~~lv~~~~~~~~v~~vd~~Gk~l~~~~~~~~~~~~~~~~~~v~~~~~G~~lv~~~  143 (276)
T 3no2_A           72 AAP--AGC------EMQTARILPDGNALVAWCGHPSTILEVNMKGEVLSKTEFETGIERPHAQFRQINKNKKGNYLVPLF  143 (276)
T ss_dssp             ECC--TTC------EEEEEEECTTSCEEEEEESTTEEEEEECTTSCEEEEEEECCSCSSGGGSCSCCEECTTSCEEEEET
T ss_pred             cCC--CCc------cccccEECCCCCEEEEecCCCCEEEEEeCCCCEEEEEeccCCCCcccccccCceECCCCCEEEEec
Confidence            321  000      0112233347887776654 56788999866543333332211  1011 112 223677665432


Q ss_pred             EeeCCccEEEEEEEecC-CCCeEEEEeeChhhhhcccCcceEEEEEecCCEEEEEeeeCCCCeEEEEECCCCcE
Q 012227          365 LTKNAATCVCIWELQKM-TLLWKEVDRMPNIWCLDFYGKHVRMTCLGNKGLLMLSLRSRQMNRLVTYNVMSREW  437 (468)
Q Consensus       365 ~~~~~~~~i~Vw~ld~~-~~~W~~v~~mp~~~~~~~~~~~~~~~~~~~~~~I~~~~~~~~~~~l~~YD~~t~~w  437 (468)
                          ...  .|..++.. +..|+.-.  +....        .. ....+|.+++..  ....+++.+|+++++.
T Consensus       144 ----~~~--~v~~~d~~G~~~w~~~~--~~~~~--------~~-~~~~~g~~~v~~--~~~~~v~~~d~~tG~~  198 (276)
T 3no2_A          144 ----ATS--EVREIAPNGQLLNSVKL--SGTPF--------SS-AFLDNGDCLVAC--GDAHCFVQLNLESNRI  198 (276)
T ss_dssp             ----TTT--EEEEECTTSCEEEEEEC--SSCCC--------EE-EECTTSCEEEEC--BTTSEEEEECTTTCCE
T ss_pred             ----CCC--EEEEECCCCCEEEEEEC--CCCcc--------ce-eEcCCCCEEEEe--CCCCeEEEEeCcCCcE
Confidence                112  34444544 33555432  11100        11 222234443322  2245799999997754

>3nol_A Glutamine cyclotransferase; beta-propeller, glutaminyl cyclase, pyrogl transferase; 1.70A {Zymomonas mobilis} PDB: 3nom_A

Probab=94.26  E-value=0.4  Score=43.89  Aligned_cols=108  Identities=12%  Similarity=-0.032  Sum_probs=67.9

Q ss_pred             EECCEEEEEEcCC--CeEEEEECCCCeEEEeecCCCCCCCCceEEEECCeEEEEEEEeeCCccEEEEEEEecCCCCeEEE
Q 012227          311 SVDGILYFMRSDP--EGIVSYNMVTGVWKQFIIPTPLHLNDHTLAECGGRIMLVGLLTKNAATCVCIWELQKMTLLWKEV  388 (468)
Q Consensus       311 ~~~G~lY~~~~~~--~~i~~fD~~~~~w~~i~~P~p~~~~~~~l~~~~G~L~lv~~~~~~~~~~i~Vw~ld~~~~~W~~v  388 (468)
                      +.+|.+|.-++..  ..|..+|+++++-..- ++.+.......+...+++||++....+      .+|++|..  .-+.+
T Consensus        50 ~~~~~LyestG~~g~S~v~~vD~~Tgkv~~~-~~l~~~~FgeGit~~g~~ly~ltw~~~------~v~v~D~~--t~~~~  120 (262)
T 3nol_A           50 YRNGYFYESTGLNGRSSIRKVDIESGKTLQQ-IELGKRYFGEGISDWKDKIVGLTWKNG------LGFVWNIR--NLRQV  120 (262)
T ss_dssp             EETTEEEEEEEETTEEEEEEECTTTCCEEEE-EECCTTCCEEEEEEETTEEEEEESSSS------EEEEEETT--TCCEE
T ss_pred             EECCEEEEECCCCCCceEEEEECCCCcEEEE-EecCCccceeEEEEeCCEEEEEEeeCC------EEEEEECc--cCcEE
Confidence            3588888877532  3799999999876542 344444344556778999998864332      67788874  34455


Q ss_pred             EeeChhhhhcccCcceEEEEEecCCEEEEEeeeCCCCeEEEEECCCCcEE
Q 012227          389 DRMPNIWCLDFYGKHVRMTCLGNKGLLMLSLRSRQMNRLVTYNVMSREWL  438 (468)
Q Consensus       389 ~~mp~~~~~~~~~~~~~~~~~~~~~~I~~~~~~~~~~~l~~YD~~t~~w~  438 (468)
                      .+++...    .    .+.+..+++.+|+..   ....+..+|+++.+..
T Consensus       121 ~ti~~~~----e----G~glt~dg~~L~~Sd---Gs~~i~~iDp~T~~v~  159 (262)
T 3nol_A          121 RSFNYDG----E----GWGLTHNDQYLIMSD---GTPVLRFLDPESLTPV  159 (262)
T ss_dssp             EEEECSS----C----CCCEEECSSCEEECC---SSSEEEEECTTTCSEE
T ss_pred             EEEECCC----C----ceEEecCCCEEEEEC---CCCeEEEEcCCCCeEE
Confidence            5554321    1    123444567777643   2468999999986543

>3v65_B Low-density lipoprotein receptor-related protein; laminin-G, beta-propeller, protein binding; 3.30A {Rattus norvegicus}

Probab=94.11  E-value=4.5  Score=39.11  Aligned_cols=195  Identities=13%  Similarity=0.079  Sum_probs=100.5

Q ss_pred             eeecCceEEEEEcCCceEEEEcCCCCceEecCCCCcCCcceeEEEEEEcCCCCCCCeEEEEEEec-CcEEEEeCCCCCcc
Q 012227          210 VASAGGLVCFLDIGHRNFYVCNPLTQSFKELPARSVKVWSRVAVGMTLNGNSTSSGYKILWVGCD-GEYEIYDSLRNSWT  288 (468)
Q Consensus       210 ~~s~~GLl~~~~~~~~~~~V~NP~T~~~~~LP~~~~~~~~~~~~~~~~d~~~~~~~ykVv~v~~~-~~v~vy~s~t~~W~  288 (468)
                      ....+|.|++.+....+++.+++.++....+......  .  ..++.+|  .  ...+||+.... ..+++++.....-+
T Consensus       123 ~d~~~~~ly~~D~~~~~I~r~~~~g~~~~~~~~~~~~--~--p~glavd--~--~~g~lY~~d~~~~~I~~~~~dg~~~~  194 (386)
T 3v65_B          123 FHHRRELVFWSDVTLDRILRANLNGSNVEEVVSTGLE--S--PGGLAVD--W--VHDKLYWTDSGTSRIEVANLDGAHRK  194 (386)
T ss_dssp             EETTTTEEEEEETTTTEEEEEETTSCCEEEEECSSCS--C--CCCEEEE--T--TTTEEEEEETTTTEEEECBTTSCSCE
T ss_pred             EecCCCeEEEEeCCCCcEEEEecCCCCcEEEEeCCCC--C--ccEEEEE--e--CCCeEEEEcCCCCeEEEEeCCCCceE
Confidence            3446788998887778899999988765554322111  1  1234444  1  12356665432 34777776543211


Q ss_pred             CCCCCCCCcccCcccccccceEEE---CCEEEEEEcCC-CeEEEEECCCCeEEEeecCCCCCCCCceEEEE--CCeEEEE
Q 012227          289 RPGSMPSNIKLPVSLNFRSQAVSV---DGILYFMRSDP-EGIVSYNMVTGVWKQFIIPTPLHLNDHTLAEC--GGRIMLV  362 (468)
Q Consensus       289 ~~~~~p~~~~~~~~~~~~~~~v~~---~G~lY~~~~~~-~~i~~fD~~~~~w~~i~~P~p~~~~~~~l~~~--~G~L~lv  362 (468)
                      .+.  .....       ...++.+   +|.+||..... ..|..+|+....-..+ ...... .-..|+..  +|+||++
T Consensus       195 ~l~--~~~l~-------~P~giavdp~~g~ly~td~~~~~~I~r~~~dG~~~~~~-~~~~~~-~PnGlavd~~~~~lY~a  263 (386)
T 3v65_B          195 VLL--WQSLE-------KPRAIALHPMEGTIYWTDWGNTPRIEASSMDGSGRRII-ADTHLF-WPNGLTIDYAGRRMYWV  263 (386)
T ss_dssp             EEE--CSSCS-------CEEEEEEETTTTEEEEEECSSSCEEEEEETTSCSCEEE-ECSSCS-CEEEEEEEGGGTEEEEE
T ss_pred             Eee--cCCCC-------CCcEEEEEcCCCeEEEeccCCCCEEEEEeCCCCCcEEE-EECCCC-CeeeEEEeCCCCEEEEE
Confidence            111  00111       1223333   68999988665 7899999986544433 111111 11234443  7899987


Q ss_pred             EEEeeCCccEEEEEEEecCCCCeEEEEeeChhhhhcccCcceEEEEEecCCEEEEEeeeCCCCeEEEEECCCC-cEEEc
Q 012227          363 GLLTKNAATCVCIWELQKMTLLWKEVDRMPNIWCLDFYGKHVRMTCLGNKGLLMLSLRSRQMNRLVTYNVMSR-EWLKV  440 (468)
Q Consensus       363 ~~~~~~~~~~i~Vw~ld~~~~~W~~v~~mp~~~~~~~~~~~~~~~~~~~~~~I~~~~~~~~~~~l~~YD~~t~-~w~~v  440 (468)
                      ...    ..  .|++++.....=..+..-.         ...+......++.||+..  .....|..+|..++ ..+.+
T Consensus       264 D~~----~~--~I~~~d~dG~~~~~~~~~~---------~~~P~giav~~~~ly~td--~~~~~V~~~~~~~G~~~~~i  325 (386)
T 3v65_B          264 DAK----HH--VIERANLDGSHRKAVISQG---------LPHPFAITVFEDSLYWTD--WHTKSINSANKFTGKNQEII  325 (386)
T ss_dssp             ETT----TT--EEEEECTTSCSCEEEECSS---------CSSEEEEEEETTEEEEEE--TTTTEEEEEETTTCCSCEEE
T ss_pred             ECC----CC--EEEEEeCCCCeeEEEEECC---------CCCceEEEEECCEEEEee--CCCCeEEEEECCCCcceEEE
Confidence            532    22  5666665422111221111         001222222567887643  34578999995443 34444

>2qc5_A Streptogramin B lactonase; beta propeller, lyase; 1.80A {Staphylococcus cohnii}

Probab=94.04  E-value=3.3  Score=37.40  Aligned_cols=194  Identities=12%  Similarity=0.088  Sum_probs=102.4

Q ss_pred             eeecCceEEEEEcCCceEEEEcCCCCceEecCCCCcCCcceeEEEEEEcCCCCCCCeEEEEEEe-cCcEEEEeCCCCCcc
Q 012227          210 VASAGGLVCFLDIGHRNFYVCNPLTQSFKELPARSVKVWSRVAVGMTLNGNSTSSGYKILWVGC-DGEYEIYDSLRNSWT  288 (468)
Q Consensus       210 ~~s~~GLl~~~~~~~~~~~V~NP~T~~~~~LP~~~~~~~~~~~~~~~~d~~~~~~~ykVv~v~~-~~~v~vy~s~t~~W~  288 (468)
                      ....+|-+++.......+.++|+. ++...++.... .  ....++..++     +.++++... ...+.+||.. +.+.
T Consensus        26 ~~d~~g~l~v~~~~~~~v~~~~~~-~~~~~~~~~~~-~--~~~~~i~~~~-----~g~l~v~~~~~~~v~~~d~~-g~~~   95 (300)
T 2qc5_A           26 TSSEDGKVWFTQHKANKISSLDQS-GRIKEFEVPTP-D--AKVMCLIVSS-----LGDIWFTENGANKIGKLSKK-GGFT   95 (300)
T ss_dssp             EECTTSCEEEEETTTTEEEEECTT-SCEEEEECSST-T--CCEEEEEECT-----TSCEEEEETTTTEEEEECTT-SCEE
T ss_pred             eECCCCCEEEEcCCCCeEEEECCC-CceEEEECCCC-C--CcceeEEECC-----CCCEEEEecCCCeEEEECCC-CCeE
Confidence            334567777777656689999998 77765543211 1  1223444442     124554443 3458888877 6654


Q ss_pred             CCCCCCCCcccCcccccccceEEE--CCEEEEEEcCCCeEEEEECCCCeEEEeecCCCCCCCCceEEE-ECCeEEEEEEE
Q 012227          289 RPGSMPSNIKLPVSLNFRSQAVSV--DGILYFMRSDPEGIVSYNMVTGVWKQFIIPTPLHLNDHTLAE-CGGRIMLVGLL  365 (468)
Q Consensus       289 ~~~~~p~~~~~~~~~~~~~~~v~~--~G~lY~~~~~~~~i~~fD~~~~~w~~i~~P~p~~~~~~~l~~-~~G~L~lv~~~  365 (468)
                      .... +....       ....+.+  +|.+|+.......|..||+. ++...+..+.... .-..++. -+|+|++....
T Consensus        96 ~~~~-~~~~~-------~~~~i~~~~~g~l~v~~~~~~~i~~~~~~-g~~~~~~~~~~~~-~~~~i~~d~~g~l~v~~~~  165 (300)
T 2qc5_A           96 EYPL-PQPDS-------GPYGITEGLNGDIWFTQLNGDRIGKLTAD-GTIYEYDLPNKGS-YPAFITLGSDNALWFTENQ  165 (300)
T ss_dssp             EEEC-SSTTC-------CEEEEEECSTTCEEEEETTTTEEEEECTT-SCEEEEECSSTTC-CEEEEEECTTSSEEEEETT
T ss_pred             EecC-CCCCC-------CCccceECCCCCEEEEccCCCeEEEECCC-CCEEEccCCCCCC-CceeEEECCCCCEEEEecC
Confidence            3311 11100       1123333  68888877656689999998 6666554432111 1122333 36888775421


Q ss_pred             eeCCccEEEEEEEecCCCCeEEEEeeChhhhhcccCcceEEEEEecCCEEEEEeeeCCCCeEEEEECCCCcEEEc
Q 012227          366 TKNAATCVCIWELQKMTLLWKEVDRMPNIWCLDFYGKHVRMTCLGNKGLLMLSLRSRQMNRLVTYNVMSREWLKV  440 (468)
Q Consensus       366 ~~~~~~~i~Vw~ld~~~~~W~~v~~mp~~~~~~~~~~~~~~~~~~~~~~I~~~~~~~~~~~l~~YD~~t~~w~~v  440 (468)
                          ..  .|++++. +++...+ .++....      ...-.++..+|.||+...  ..+.+..||+ ++++..+
T Consensus       166 ----~~--~i~~~~~-~g~~~~~-~~~~~~~------~~~~i~~d~~g~l~v~~~--~~~~i~~~~~-~g~~~~~  223 (300)
T 2qc5_A          166 ----NN--SIGRITN-TGKLEEY-PLPTNAA------APVGITSGNDGALWFVEI--MGNKIGRITT-TGEISEY  223 (300)
T ss_dssp             ----TT--EEEEECT-TCCEEEE-ECSSTTC------CEEEEEECTTSSEEEEET--TTTEEEEECT-TCCEEEE
T ss_pred             ----CC--eEEEECC-CCcEEEe-eCCCCCC------CcceEEECCCCCEEEEcc--CCCEEEEEcC-CCcEEEE
Confidence                12  4667776 4555543 2221110      011223344567776432  2457999998 5666554

>4ggc_A P55CDC, cell division cycle protein 20 homolog; cell cycle, mitosis, securin, ubiquitination, WD40; HET: MRD; 1.35A {Homo sapiens}

Probab=93.93  E-value=1.1  Score=41.10  Aligned_cols=67  Identities=9%  Similarity=0.060  Sum_probs=36.6

Q ss_pred             ecCceEEEEEcCCceEEEEcCCCCceEecCCCCcCCcceeEEEEEEcCCCCCCCeEEEEEEecCcEEEEeCCCCC
Q 012227          212 SAGGLVCFLDIGHRNFYVCNPLTQSFKELPARSVKVWSRVAVGMTLNGNSTSSGYKILWVGCDGEYEIYDSLRNS  286 (468)
Q Consensus       212 s~~GLl~~~~~~~~~~~V~NP~T~~~~~LP~~~~~~~~~~~~~~~~d~~~~~~~ykVv~v~~~~~v~vy~s~t~~  286 (468)
                      |.+++|.+..  .+.+.|||..|++...+-....+....  ..+.+.+   .+ -.++..+.++.+.+|+..+++
T Consensus        34 S~~~~lAvg~--D~tV~iWd~~tg~~~~~~~~~~~~~~V--~~v~~~~---~~-~~l~sgs~Dg~v~iw~~~~~~  100 (318)
T 4ggc_A           34 SSGNVLAVAL--DNSVYLWSASSGDILQLLQMEQPGEYI--SSVAWIK---EG-NYLAVGTSSAEVQLWDVQQQK  100 (318)
T ss_dssp             CTTSEEEEEE--TTEEEEEETTTCCEEEEEECCSTTCCE--EEEEECT---TS-SEEEEEETTSEEEEEETTTTE
T ss_pred             CCCCEEEEEe--CCEEEEEECCCCCEEEEEEecCCCCeE--EEEEECC---CC-CEEEEEECCCcEEEeecCCce
Confidence            4566665543  347999999999876543221111112  2333331   11 233333445669999988764

>3q7m_A Lipoprotein YFGL, BAMB; beta-propeller, BAM complex, outer membrane protein folding, negative, BAMA, protein binding; 1.65A {Escherichia coli} PDB: 3q7n_A 3q7o_A 3p1l_A 3prw_A 2yh3_A 3q54_A

Probab=93.93  E-value=2.8  Score=39.92  Aligned_cols=108  Identities=17%  Similarity=0.172  Sum_probs=60.2

Q ss_pred             cCceEEEEEcCCceEEEEcCCCCceE--e-cCCCCc---CCcceeEEEEEEcCCCCCCCeEEEEEEecCcEEEEeCCCCC
Q 012227          213 AGGLVCFLDIGHRNFYVCNPLTQSFK--E-LPARSV---KVWSRVAVGMTLNGNSTSSGYKILWVGCDGEYEIYDSLRNS  286 (468)
Q Consensus       213 ~~GLl~~~~~~~~~~~V~NP~T~~~~--~-LP~~~~---~~~~~~~~~~~~d~~~~~~~ykVv~v~~~~~v~vy~s~t~~  286 (468)
                      .+|.|++.... ..++.+|+.|++..  . ++....   ............+      +-+|++...++.+..+|..+++
T Consensus        52 ~~~~v~~~~~~-g~v~a~d~~tG~~~W~~~~~~~~~~~~~~~~~~~~~~~~~------~~~v~v~~~~g~l~a~d~~tG~  124 (376)
T 3q7m_A           52 ADNVVYAADRA-GLVKALNADDGKEIWSVSLAEKDGWFSKEPALLSGGVTVS------GGHVYIGSEKAQVYALNTSDGT  124 (376)
T ss_dssp             ETTEEEEECTT-SEEEEEETTTCCEEEEEECCC---CCSCCCCCEEEEEEEE------TTEEEEEETTSEEEEEETTTCC
T ss_pred             ECCEEEEEcCC-CeEEEEEccCCceeeeecCccccccccccCcccccCceEe------CCEEEEEcCCCEEEEEECCCCC
Confidence            46777666532 47888999888743  2 221100   0001111222222      2366665555679999987664


Q ss_pred             --ccCCCCCCCCcccCcccccccceEEECCEEEEEEcCCCeEEEEECCCCe--EEE
Q 012227          287 --WTRPGSMPSNIKLPVSLNFRSQAVSVDGILYFMRSDPEGIVSYNMVTGV--WKQ  338 (468)
Q Consensus       287 --W~~~~~~p~~~~~~~~~~~~~~~v~~~G~lY~~~~~~~~i~~fD~~~~~--w~~  338 (468)
                        |+.-..  ..        ....++..+|.+|+... ...|.+||..+++  |..
T Consensus       125 ~~W~~~~~--~~--------~~~~p~~~~~~v~v~~~-~g~l~~~d~~tG~~~W~~  169 (376)
T 3q7m_A          125 VAWQTKVA--GE--------ALSRPVVSDGLVLIHTS-NGQLQALNEADGAVKWTV  169 (376)
T ss_dssp             EEEEEECS--SC--------CCSCCEEETTEEEEECT-TSEEEEEETTTCCEEEEE
T ss_pred             EEEEEeCC--Cc--------eEcCCEEECCEEEEEcC-CCeEEEEECCCCcEEEEE
Confidence              764211  11        12345667888887653 4589999997764  765

>3e5z_A Putative gluconolactonase; X-RAY NESG Q9RXN3 gluconolactonase, structural genomics, PSI protein structure initiative; 2.01A {Deinococcus radiodurans}

Probab=93.74  E-value=4  Score=37.25  Aligned_cols=190  Identities=11%  Similarity=0.042  Sum_probs=93.8

Q ss_pred             eecCceEEEEEcCCceEEEEcCCCCceEecCCCCcCCcceeEEEEEEcCCCCCCCeEEEEE----Ee-------------
Q 012227          211 ASAGGLVCFLDIGHRNFYVCNPLTQSFKELPARSVKVWSRVAVGMTLNGNSTSSGYKILWV----GC-------------  273 (468)
Q Consensus       211 ~s~~GLl~~~~~~~~~~~V~NP~T~~~~~LP~~~~~~~~~~~~~~~~d~~~~~~~ykVv~v----~~-------------  273 (468)
                      -+.+|.+++.......+.++|+.+++...+..............+.++  +   +.++++.    +.             
T Consensus        76 ~~~dg~l~v~~~~~~~i~~~d~~~g~~~~~~~~~~~~~~~~~~~i~~d--~---~G~l~vtd~~~g~~~~~~~~~~~~~~  150 (296)
T 3e5z_A           76 LNKQGHLIACSHGLRRLERQREPGGEWESIADSFEGKKLNSPNDVCLA--P---DGSLWFSDPTYGIDKPEEGYGGEMEL  150 (296)
T ss_dssp             ECTTCCEEEEETTTTEEEEECSTTCCEEEEECEETTEECCCCCCEEEC--T---TSCEEEEECSHHHHCGGGSSCCCCCS
T ss_pred             ECCCCcEEEEecCCCeEEEEcCCCCcEEEEeeccCCCCCCCCCCEEEC--C---CCCEEEECCccccccccccccccccC
Confidence            345777777766556899999999988766432110000001123334  1   1234443    11             


Q ss_pred             -cCcEEEEeCCCCCccCCCCCCCCcccCcccccccceEEE--CCEEEEEEcCCCeEEEEECC-CCeE-EEee-cCCCCCC
Q 012227          274 -DGEYEIYDSLRNSWTRPGSMPSNIKLPVSLNFRSQAVSV--DGILYFMRSDPEGIVSYNMV-TGVW-KQFI-IPTPLHL  347 (468)
Q Consensus       274 -~~~v~vy~s~t~~W~~~~~~p~~~~~~~~~~~~~~~v~~--~G~lY~~~~~~~~i~~fD~~-~~~w-~~i~-~P~p~~~  347 (468)
                       ...+..|+.. ++-+.+..   ...       ...++.+  +|.+++.......|..||+. +++. .... .... ..
T Consensus       151 ~~~~l~~~~~~-g~~~~~~~---~~~-------~~~gi~~s~dg~~lv~~~~~~~i~~~~~~~~g~~~~~~~~~~~~-~~  218 (296)
T 3e5z_A          151 PGRWVFRLAPD-GTLSAPIR---DRV-------KPNGLAFLPSGNLLVSDTGDNATHRYCLNARGETEYQGVHFTVE-PG  218 (296)
T ss_dssp             SSCEEEEECTT-SCEEEEEC---CCS-------SEEEEEECTTSCEEEEETTTTEEEEEEECSSSCEEEEEEEECCS-SS
T ss_pred             CCcEEEEECCC-CCEEEeec---CCC-------CCccEEECCCCCEEEEeCCCCeEEEEEECCCCcCcCCCeEeeCC-CC
Confidence             1235556554 33322111   100       1123444  57666655556789999986 5555 2111 1111 11


Q ss_pred             CCceEEE-ECCeEEEEEEEeeCCccEEEEEEEecCCCCeEEEEeeChhhhhcccCcceEEEEE-e-cCCEEEEEeeeCCC
Q 012227          348 NDHTLAE-CGGRIMLVGLLTKNAATCVCIWELQKMTLLWKEVDRMPNIWCLDFYGKHVRMTCL-G-NKGLLMLSLRSRQM  424 (468)
Q Consensus       348 ~~~~l~~-~~G~L~lv~~~~~~~~~~i~Vw~ld~~~~~W~~v~~mp~~~~~~~~~~~~~~~~~-~-~~~~I~~~~~~~~~  424 (468)
                      .-..++. -+|+|++..  .    .  .|++++.. ++-.....++.. .        .-.++ + +++.||+...    
T Consensus       219 ~p~~i~~d~~G~l~v~~--~----~--~v~~~~~~-g~~~~~~~~~~~-~--------~~~~f~~~d~~~L~v~t~----  276 (296)
T 3e5z_A          219 KTDGLRVDAGGLIWASA--G----D--GVHVLTPD-GDELGRVLTPQT-T--------SNLCFGGPEGRTLYMTVS----  276 (296)
T ss_dssp             CCCSEEEBTTSCEEEEE--T----T--EEEEECTT-SCEEEEEECSSC-C--------CEEEEESTTSCEEEEEET----
T ss_pred             CCCeEEECCCCCEEEEc--C----C--eEEEECCC-CCEEEEEECCCC-c--------eeEEEECCCCCEEEEEcC----
Confidence            1123443 378988765  2    2  34455664 333333233322 1        11233 2 3457877432    


Q ss_pred             CeEEEEECCCCcEEE
Q 012227          425 NRLVTYNVMSREWLK  439 (468)
Q Consensus       425 ~~l~~YD~~t~~w~~  439 (468)
                      ..++.||+++++.++
T Consensus       277 ~~l~~~~~~~~~~~~  291 (296)
T 3e5z_A          277 TEFWSIETNVRGLEH  291 (296)
T ss_dssp             TEEEEEECSCCBCCC
T ss_pred             CeEEEEEcccccccc
Confidence            479999999998764

>2z2n_A Virginiamycin B lyase; seven-bladed beta-propeller, antibiotic resistance, E mechanism, virginiamycin B hydrolase streptogramin; HET: MSE; 1.65A {Staphylococcus aureus} PDB: 2z2o_A 2z2p_A*

Probab=93.74  E-value=3.8  Score=37.00  Aligned_cols=217  Identities=14%  Similarity=0.135  Sum_probs=108.6

Q ss_pred             ceecCCCCcccCCCCCCCCCCcEEEEeeecCceEEEEEcCCceEEEEcCCCCceEecCCCCcCCcceeEEEEEEcCCCCC
Q 012227          184 AMYDPSLKKWHHPTISSLPTKMIILPVASAGGLVCFLDIGHRNFYVCNPLTQSFKELPARSVKVWSRVAVGMTLNGNSTS  263 (468)
Q Consensus       184 ~~~dp~~~~w~~~~l~~~p~~~~~~~~~s~~GLl~~~~~~~~~~~V~NP~T~~~~~LP~~~~~~~~~~~~~~~~d~~~~~  263 (468)
                      ..||+. +......++........+ ....+|.+++.......++++|+. ++...+..+..   .....++..++    
T Consensus        39 ~~~d~~-~~~~~~~~~~~~~~~~~i-~~~~~g~l~v~~~~~~~i~~~~~~-g~~~~~~~~~~---~~~~~~i~~~~----  108 (299)
T 2z2n_A           39 SCINLD-GKITEYPLPTPDAKVMCL-TISSDGEVWFTENAANKIGRITKK-GIIKEYTLPNP---DSAPYGITEGP----  108 (299)
T ss_dssp             EEECTT-CCEEEEECSSTTCCEEEE-EECTTSCEEEEETTTTEEEEECTT-SCEEEEECSST---TCCEEEEEECT----
T ss_pred             EEEcCC-CCeEEecCCcccCceeeE-EECCCCCEEEeCCCCCeEEEECCC-CcEEEEeCCCc---CCCceeeEECC----
Confidence            456666 444332222211222223 333577777776655679999986 55544432111   11224455552    


Q ss_pred             CCeEEEEEEe-cCcEEEEeCCCCCccCCCCCCCCcccCcccccccceEEE--CCEEEEEEcCCCeEEEEECCCCeEEEee
Q 012227          264 SGYKILWVGC-DGEYEIYDSLRNSWTRPGSMPSNIKLPVSLNFRSQAVSV--DGILYFMRSDPEGIVSYNMVTGVWKQFI  340 (468)
Q Consensus       264 ~~ykVv~v~~-~~~v~vy~s~t~~W~~~~~~p~~~~~~~~~~~~~~~v~~--~G~lY~~~~~~~~i~~fD~~~~~w~~i~  340 (468)
                       +.++++... ...+.+|+. ++....... +...      . ....+.+  +|.+|+.......|..||+ ++++..+.
T Consensus       109 -~g~l~v~~~~~~~i~~~d~-~g~~~~~~~-~~~~------~-~~~~i~~~~~g~l~v~~~~~~~i~~~~~-~g~~~~~~  177 (299)
T 2z2n_A          109 -NGDIWFTEMNGNRIGRITD-DGKIREYEL-PNKG------S-YPSFITLGSDNALWFTENQNNAIGRITE-SGDITEFK  177 (299)
T ss_dssp             -TSCEEEEETTTTEEEEECT-TCCEEEEEC-SSTT------C-CEEEEEECTTSCEEEEETTTTEEEEECT-TCCEEEEE
T ss_pred             -CCCEEEEecCCceEEEECC-CCCEEEecC-CCCC------C-CCceEEEcCCCCEEEEeCCCCEEEEEcC-CCcEEEee
Confidence             124554432 345888887 555432211 1000      0 1123333  5788887765568999999 77776654


Q ss_pred             cCCCCCCCCc-eEEEE-CCeEEEEEEEeeCCccEEEEEEEecCCCCeEEEEeeChhhhhcccCcceEEEEEecCCEEEEE
Q 012227          341 IPTPLHLNDH-TLAEC-GGRIMLVGLLTKNAATCVCIWELQKMTLLWKEVDRMPNIWCLDFYGKHVRMTCLGNKGLLMLS  418 (468)
Q Consensus       341 ~P~p~~~~~~-~l~~~-~G~L~lv~~~~~~~~~~i~Vw~ld~~~~~W~~v~~mp~~~~~~~~~~~~~~~~~~~~~~I~~~  418 (468)
                      .+..  .... .++.. +|+|++....    ..  .|++++. ++....+ .++...      ....-.++..+|.||+.
T Consensus       178 ~~~~--~~~~~~i~~~~~g~l~v~~~~----~~--~i~~~~~-~g~~~~~-~~~~~~------~~~~~i~~~~~g~l~v~  241 (299)
T 2z2n_A          178 IPTP--ASGPVGITKGNDDALWFVEII----GN--KIGRITT-SGEITEF-KIPTPN------ARPHAITAGAGIDLWFT  241 (299)
T ss_dssp             CSST--TCCEEEEEECTTSSEEEEETT----TT--EEEEECT-TCCEEEE-ECSSTT------CCEEEEEECSTTCEEEE
T ss_pred             CCCC--CCcceeEEECCCCCEEEEccC----Cc--eEEEECC-CCcEEEE-ECCCCC------CCceeEEECCCCCEEEe
Confidence            4322  1222 23332 6888775421    12  4555676 5555443 222110      00111233345677764


Q ss_pred             eeeCCCCeEEEEECCCCcEEEc
Q 012227          419 LRSRQMNRLVTYNVMSREWLKV  440 (468)
Q Consensus       419 ~~~~~~~~l~~YD~~t~~w~~v  440 (468)
                      .  ...+.+..||+ +++.+.+
T Consensus       242 ~--~~~~~i~~~d~-~g~~~~~  260 (299)
T 2z2n_A          242 E--WGANKIGRLTS-NNIIEEY  260 (299)
T ss_dssp             E--TTTTEEEEEET-TTEEEEE
T ss_pred             c--cCCceEEEECC-CCceEEE
Confidence            3  23468999998 4565554

>3m0c_C LDL receptor, low-density lipoprotein receptor; protein complex, beta propeller, cholesterol clearance, PCSK autocatalytic cleavage; 7.01A {Homo sapiens}

Probab=93.71  E-value=3.5  Score=44.16  Aligned_cols=190  Identities=11%  Similarity=0.104  Sum_probs=95.9

Q ss_pred             eeecCceEEEEEcCCceEEEEcCCCC----ceEecCCCCcCCcceeEEEEEEcCCCCCCCeEEEEEEec-CcEEEEeCCC
Q 012227          210 VASAGGLVCFLDIGHRNFYVCNPLTQ----SFKELPARSVKVWSRVAVGMTLNGNSTSSGYKILWVGCD-GEYEIYDSLR  284 (468)
Q Consensus       210 ~~s~~GLl~~~~~~~~~~~V~NP~T~----~~~~LP~~~~~~~~~~~~~~~~d~~~~~~~ykVv~v~~~-~~v~vy~s~t  284 (468)
                      +...+|.|++.+....+++.+++-..    ....+-.....    ...|+.+|  ..  .-+||+.... ..+++++...
T Consensus       431 ~d~~~~~lY~sD~~~~~I~~~~l~g~~~~~~~~~vi~~~l~----~P~GLAvD--~~--~~~LY~tD~~~~~I~v~~ldG  502 (791)
T 3m0c_C          431 TEVASNRIYWSDLSQRMICSTQLDRAHGVSSYDTVISRDIQ----APDGLAVD--WI--HSNIYWTDSVLGTVSVADTKG  502 (791)
T ss_dssp             EETTTTEEEEEETTTTEEEEEEC--------CEEEECSSCS----CCCEEEEE--TT--TTEEEEEETTTTEEEEEETTS
T ss_pred             ecccCCeeEEeeccceeEEEEeccCCCCCcceeEEEecCCC----Ccceeeee--ec--CCcEEEEecCCCeEEEEeCCC
Confidence            34457788888776667877776542    12222111111    12345555  21  2367766543 3488888764


Q ss_pred             CCccCCCCCCCCcccCcccccccceEEE---CCEEEEEEcCC-CeEEEEECCCCeEEEeecCCCCCCCC-ceEEEE--CC
Q 012227          285 NSWTRPGSMPSNIKLPVSLNFRSQAVSV---DGILYFMRSDP-EGIVSYNMVTGVWKQFIIPTPLHLND-HTLAEC--GG  357 (468)
Q Consensus       285 ~~W~~~~~~p~~~~~~~~~~~~~~~v~~---~G~lY~~~~~~-~~i~~fD~~~~~w~~i~~P~p~~~~~-~~l~~~--~G  357 (468)
                      ..-+.+..  ....       ...++++   +|.|||..... ..|..+++....-..+ +..  .... ..|+.-  +|
T Consensus       503 ~~~~~l~~--~~l~-------~P~gIaVDp~~g~LYwtD~g~~~~I~~~~~dG~~~~~l-v~~--~l~~P~GLavD~~~~  570 (791)
T 3m0c_C          503 VKRKTLFR--ENGS-------KPRAIVVDPVHGFMYWTDWGTPAKIKKGGLNGVDIYSL-VTE--NIQWPNGITLDLLSG  570 (791)
T ss_dssp             SSEEEEEE--CTTC-------CEEEEEEETTTTEEEEEECSSSCEEEEEETTSCCEEEE-ECS--SCSCEEEEEEETTTT
T ss_pred             CeEEEEEe--CCCC-------CcceEEEecCCCCEEEecCCCCCeEEEEecCCCceEEE-EeC--CCCCceEEEEecCCC
Confidence            43322210  0000       1234555   58999988543 6899999987655444 221  1112 234443  78


Q ss_pred             eEEEEEEEeeCCccEEEEEEEecCC-CCeEEEEeeChhhhhcccCcceEEEEEecCCEEEEEeeeCCCCeEEEEECCCC
Q 012227          358 RIMLVGLLTKNAATCVCIWELQKMT-LLWKEVDRMPNIWCLDFYGKHVRMTCLGNKGLLMLSLRSRQMNRLVTYNVMSR  435 (468)
Q Consensus       358 ~L~lv~~~~~~~~~~i~Vw~ld~~~-~~W~~v~~mp~~~~~~~~~~~~~~~~~~~~~~I~~~~~~~~~~~l~~YD~~t~  435 (468)
                      +||++...    ..  .|++++... ...+.+.. ...+.       .++.....++.||+.-  .....|..+|..++
T Consensus       571 ~LYwaD~~----~~--~I~~~d~dG~~~~~v~~~-~~~l~-------~P~glav~~~~lYwtD--~~~~~I~~~dk~tG  633 (791)
T 3m0c_C          571 RLYWVDSK----LH--SISSIDVNGGNRKTILED-EKRLA-------HPFSLAVFEDKVFWTD--IINEAIFSANRLTG  633 (791)
T ss_dssp             EEEEEETT----TT--EEEEEETTSCSCEEEEEC-TTTTS-------SEEEEEEETTEEEEEE--TTTTEEEEEETTTC
T ss_pred             eEEEEeCC----CC--cEEEEecCCCceEEEecC-CCccC-------CCCEEEEeCCEEEEEE--CCCCEEEEEeCCCC
Confidence            99987532    22  566666542 23333221 11111       1222323467887642  34567888887655

>3nok_A Glutaminyl cyclase; beta-propeller, cyclotransferase, pyrogl transferase; HET: MES DDQ; 1.65A {Myxococcus xanthus}

Probab=93.62  E-value=0.33  Score=44.52  Aligned_cols=107  Identities=9%  Similarity=-0.101  Sum_probs=68.1

Q ss_pred             EECCEEEEEEcCCCeEEEEECCCCeEEEeecCCCCCCCCceEEEECCeEEEEEEEeeCCccEEEEEEEecCCCCeEEEEe
Q 012227          311 SVDGILYFMRSDPEGIVSYNMVTGVWKQFIIPTPLHLNDHTLAECGGRIMLVGLLTKNAATCVCIWELQKMTLLWKEVDR  390 (468)
Q Consensus       311 ~~~G~lY~~~~~~~~i~~fD~~~~~w~~i~~P~p~~~~~~~l~~~~G~L~lv~~~~~~~~~~i~Vw~ld~~~~~W~~v~~  390 (468)
                      +.++.||.-++....|..+|+++++-..-.+|  .......+...+++||++....+      .+|++|..  .-+.+.+
T Consensus        62 ~~~~~Ly~stG~~g~v~~iD~~Tgkv~~~~l~--~~~FgeGit~~g~~Ly~ltw~~~------~v~V~D~~--Tl~~~~t  131 (268)
T 3nok_A           62 FHQGHFFESTGHQGTLRQLSLESAQPVWMERL--GNIFAEGLASDGERLYQLTWTEG------LLFTWSGM--PPQRERT  131 (268)
T ss_dssp             EETTEEEEEETTTTEEEECCSSCSSCSEEEEC--TTCCEEEEEECSSCEEEEESSSC------EEEEEETT--TTEEEEE
T ss_pred             EECCEEEEEcCCCCEEEEEECCCCcEEeEECC--CCcceeEEEEeCCEEEEEEccCC------EEEEEECC--cCcEEEE
Confidence            45788999887666799999998765432133  22233446667899998754322      67888874  4555555


Q ss_pred             eChhhhhcccCcceEEEEEecCCEEEEEeeeCCCCeEEEEECCCCcEE
Q 012227          391 MPNIWCLDFYGKHVRMTCLGNKGLLMLSLRSRQMNRLVTYNVMSREWL  438 (468)
Q Consensus       391 mp~~~~~~~~~~~~~~~~~~~~~~I~~~~~~~~~~~l~~YD~~t~~w~  438 (468)
                      ++..-    .    .+.+..+++.+|+..   ..+.+..+|+++.+..
T Consensus       132 i~~~~----e----GwGLt~Dg~~L~vSd---Gs~~l~~iDp~T~~v~  168 (268)
T 3nok_A          132 TRYSG----E----GWGLCYWNGKLVRSD---GGTMLTFHEPDGFALV  168 (268)
T ss_dssp             EECSS----C----CCCEEEETTEEEEEC---SSSEEEEECTTTCCEE
T ss_pred             EeCCC----c----eeEEecCCCEEEEEC---CCCEEEEEcCCCCeEE
Confidence            54321    0    123444577887753   2578999999986544

>3jrp_A Fusion protein of protein transport protein SEC13 nucleoporin NUP145; protein complex, cytoplasmic vesicle, endoplasmic reticulum; 2.60A {Saccharomyces cerevisiae}

Probab=93.55  E-value=2.5  Score=39.65  Aligned_cols=205  Identities=11%  Similarity=0.073  Sum_probs=96.8

Q ss_pred             ceEEEEEcCCceEEEEcCCCCceEecCCCCcCCcceeEEEEEEcCCCCCCCeEEEEEEecCcEEEEeCCCCCccCCCCCC
Q 012227          215 GLVCFLDIGHRNFYVCNPLTQSFKELPARSVKVWSRVAVGMTLNGNSTSSGYKILWVGCDGEYEIYDSLRNSWTRPGSMP  294 (468)
Q Consensus       215 GLl~~~~~~~~~~~V~NP~T~~~~~LP~~~~~~~~~~~~~~~~d~~~~~~~ykVv~v~~~~~v~vy~s~t~~W~~~~~~p  294 (468)
                      |-+++.......+.+||..++++..+-.........  ..+.+.  +......++..+.++.+.+||..++.-.....+.
T Consensus        69 ~~~l~s~~~dg~v~iwd~~~~~~~~~~~~~~~~~~v--~~~~~~--~~~~~~~l~~~~~d~~i~v~d~~~~~~~~~~~~~  144 (379)
T 3jrp_A           69 GTILASCSYDGKVLIWKEENGRWSQIAVHAVHSASV--NSVQWA--PHEYGPLLLVASSDGKVSVVEFKENGTTSPIIID  144 (379)
T ss_dssp             CSEEEEEETTSCEEEEEEETTEEEEEEEECCCSSCE--EEEEEC--CGGGCSEEEEEETTSEEEEEECCTTSCCCEEEEE
T ss_pred             CCEEEEeccCCEEEEEEcCCCceeEeeeecCCCcce--EEEEeC--CCCCCCEEEEecCCCcEEEEecCCCCceeeEEec
Confidence            444444444567999999988755443322222222  233333  2111234554555667999998866321110000


Q ss_pred             CCcccCcccccccceEEE---------------CCEEEEEEcCCCeEEEEECCCC--eEEEeecCCCCCCCCceEEEE--
Q 012227          295 SNIKLPVSLNFRSQAVSV---------------DGILYFMRSDPEGIVSYNMVTG--VWKQFIIPTPLHLNDHTLAEC--  355 (468)
Q Consensus       295 ~~~~~~~~~~~~~~~v~~---------------~G~lY~~~~~~~~i~~fD~~~~--~w~~i~~P~p~~~~~~~l~~~--  355 (468)
                      ...       ..-..+.+               +|.+.+.+.....|..||+.+.  .+..+. ....+.....-+.+  
T Consensus       145 ~~~-------~~v~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~-~~~~h~~~v~~~~~sp  216 (379)
T 3jrp_A          145 AHA-------IGVNSASWAPATIEEDGEHNGTKESRKFVTGGADNLVKIWKYNSDAQTYVLES-TLEGHSDWVRDVAWSP  216 (379)
T ss_dssp             CCT-------TCEEEEEECCCC----------CTTCEEEEEETTSCEEEEEEETTTTEEEEEE-EECCCSSCEEEEEECC
T ss_pred             CCC-------CceEEEEEcCccccccccccCCCCCCEEEEEeCCCeEEEEEecCCCcceeeEE-EEecccCcEeEEEECC
Confidence            000       00011111               4666666666667888998654  343331 11112222222232  


Q ss_pred             C---CeEEEEEEEeeCCccEEEEEEEecCCCCeEEEEeeChhhhhcccCcceEEEEEe-cCCEEEEEeeeCCCCeEEEEE
Q 012227          356 G---GRIMLVGLLTKNAATCVCIWELQKMTLLWKEVDRMPNIWCLDFYGKHVRMTCLG-NKGLLMLSLRSRQMNRLVTYN  431 (468)
Q Consensus       356 ~---G~L~lv~~~~~~~~~~i~Vw~ld~~~~~W~~v~~mp~~~~~~~~~~~~~~~~~~-~~~~I~~~~~~~~~~~l~~YD  431 (468)
                      +   |++++++..    ...+.||.++.....+.........    ... ...-.++. ++..|+..  + ..+.+.+||
T Consensus       217 ~~~~~~~l~s~~~----dg~i~iwd~~~~~~~~~~~~~~~~~----~~~-~v~~~~~s~~g~~l~~~--~-~dg~i~iw~  284 (379)
T 3jrp_A          217 TVLLRSYLASVSQ----DRTCIIWTQDNEQGPWKKTLLKEEK----FPD-VLWRASWSLSGNVLALS--G-GDNKVTLWK  284 (379)
T ss_dssp             CCSSSEEEEEEET----TSCEEEEEESSTTSCCEEEESSSSC----CSS-CEEEEEECSSSCCEEEE--E-SSSSEEEEE
T ss_pred             CCCCCCeEEEEeC----CCEEEEEeCCCCCccceeeeecccc----CCC-cEEEEEEcCCCCEEEEe--c-CCCcEEEEe
Confidence            3   666665532    2478999887654444332111100    001 01112232 34444332  2 246788899


Q ss_pred             CC-CCcEEEccCC
Q 012227          432 VM-SREWLKVPGC  443 (468)
Q Consensus       432 ~~-t~~w~~v~~~  443 (468)
                      +. .++|+.+...
T Consensus       285 ~~~~~~~~~~~~~  297 (379)
T 3jrp_A          285 ENLEGKWEPAGEV  297 (379)
T ss_dssp             EEETTEEEEEEEE
T ss_pred             CCCCCccccccce
Confidence            87 5677776543

>3u4y_A Uncharacterized protein; structural genomics, PSI-biology, protein structure initiati midwest center for structural genomi CS, MCSG; 2.99A {Desulfotomaculum acetoxidans}

Probab=93.40  E-value=4.2  Score=37.49  Aligned_cols=192  Identities=10%  Similarity=0.033  Sum_probs=94.1

Q ss_pred             eEEEEcCCCCceEecCCCCcCCcceeEEEEEEcCCCCCCCeEEEEEEec-Cc-EEEEeCCCCCc-cCC--CCCCCCcccC
Q 012227          226 NFYVCNPLTQSFKELPARSVKVWSRVAVGMTLNGNSTSSGYKILWVGCD-GE-YEIYDSLRNSW-TRP--GSMPSNIKLP  300 (468)
Q Consensus       226 ~~~V~NP~T~~~~~LP~~~~~~~~~~~~~~~~d~~~~~~~ykVv~v~~~-~~-v~vy~s~t~~W-~~~--~~~p~~~~~~  300 (468)
                      .+.++|+.+++....-+...   ..  .++.+++   .+.+ +++.... .. +.+|+...+.- ...  ..++..    
T Consensus       109 ~i~v~d~~~~~~~~~~~~~~---~~--~~~~~sp---dg~~-l~~~~~~~~~~i~~~~~~~~g~~~~~~~~~~~~~----  175 (331)
T 3u4y_A          109 NMQSYSFLKNKFISTIPIPY---DA--VGIAISP---NGNG-LILIDRSSANTVRRFKIDADGVLFDTGQEFISGG----  175 (331)
T ss_dssp             EEEEEETTTTEEEEEEECCT---TE--EEEEECT---TSSC-EEEEEETTTTEEEEEEECTTCCEEEEEEEEECSS----
T ss_pred             cEEEEECCCCCeEEEEECCC---Cc--cceEECC---CCCE-EEEEecCCCceEEEEEECCCCcEeecCCccccCC----
Confidence            79999999887654322111   11  2344442   1223 5544443 56 88888654321 000  000000    


Q ss_pred             cccccccceEEE--CCE-EEEEEcCCCeEEEEECCCCeE----EEeecCCCCCCCCceEEEE-CCe-EEEEEEEeeCCcc
Q 012227          301 VSLNFRSQAVSV--DGI-LYFMRSDPEGIVSYNMVTGVW----KQFIIPTPLHLNDHTLAEC-GGR-IMLVGLLTKNAAT  371 (468)
Q Consensus       301 ~~~~~~~~~v~~--~G~-lY~~~~~~~~i~~fD~~~~~w----~~i~~P~p~~~~~~~l~~~-~G~-L~lv~~~~~~~~~  371 (468)
                          .....+.+  +|. +|+.......|..||+.+.+.    ..+  +...  ....++.. +|+ |++...    ...
T Consensus       176 ----~~~~~~~~spdg~~l~v~~~~~~~v~v~d~~~~~~~~~~~~~--~~~~--~~~~~~~spdg~~l~v~~~----~~~  243 (331)
T 3u4y_A          176 ----TRPFNITFTPDGNFAFVANLIGNSIGILETQNPENITLLNAV--GTNN--LPGTIVVSRDGSTVYVLTE----STV  243 (331)
T ss_dssp             ----SSEEEEEECTTSSEEEEEETTTTEEEEEECSSTTSCEEEEEE--ECSS--CCCCEEECTTSSEEEEECS----SEE
T ss_pred             ----CCccceEECCCCCEEEEEeCCCCeEEEEECCCCcccceeeec--cCCC--CCceEEECCCCCEEEEEEc----CCC
Confidence                01112223  565 777776667899999987664    332  2221  11223332 677 444322    123


Q ss_pred             EEEEEEEecCCCCeEEEEeeChhhh--hcccCcceEEEEEecCCEEEEEeeeCCCCeEEEEECCCCcEEEccCCccC
Q 012227          372 CVCIWELQKMTLLWKEVDRMPNIWC--LDFYGKHVRMTCLGNKGLLMLSLRSRQMNRLVTYNVMSREWLKVPGCVVP  446 (468)
Q Consensus       372 ~i~Vw~ld~~~~~W~~v~~mp~~~~--~~~~~~~~~~~~~~~~~~I~~~~~~~~~~~l~~YD~~t~~w~~v~~~~~~  446 (468)
                      .+.+  ++..+++.+.+..++....  .........+....++..+|+..  ...+.+.+||+.++....+......
T Consensus       244 ~i~~--~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~spdg~~l~v~~--~~~~~v~v~d~~~~~~~~~~~~~~~  316 (331)
T 3u4y_A          244 DVFN--FNQLSGTLSFVKSFGHGLLIDPRPLFGANQMALNKTETKLFISA--NISRELKVFTISGKVVGYVAGIEAN  316 (331)
T ss_dssp             EEEE--EETTTTEEEEEEEEECCCCCCCGGGTTCCCEEECTTSSEEEEEE--TTTTEEEEEETTSCEEEECTTCCCB
T ss_pred             EEEE--EECCCCceeeecccccccccCCCCcccccceEECCCCCEEEEec--CCCCcEEEEEecCCcccceeccccc
Confidence            3444  4655566655555443210  00000000122223455676543  3456899999999998888765543

>4aez_A CDC20, WD repeat-containing protein SLP1; cell cycle, KEN-BOX, D-BOX, APC/C; 2.30A {Schizosaccharomyces pombe}

Probab=93.38  E-value=1.9  Score=41.65  Aligned_cols=183  Identities=15%  Similarity=0.086  Sum_probs=85.8

Q ss_pred             ceEEEEcCCCCceEecCCCCcCCcceeEEEEEEcCCCCCCCeEEEEEEecCcEEEEeCCCCCccCCCCCCCCcccCcccc
Q 012227          225 RNFYVCNPLTQSFKELPARSVKVWSRVAVGMTLNGNSTSSGYKILWVGCDGEYEIYDSLRNSWTRPGSMPSNIKLPVSLN  304 (468)
Q Consensus       225 ~~~~V~NP~T~~~~~LP~~~~~~~~~~~~~~~~d~~~~~~~ykVv~v~~~~~v~vy~s~t~~W~~~~~~p~~~~~~~~~~  304 (468)
                      +.+.+||..+++...+-... ....  ...+.+.  +  +.-.++..+.++.+.+||..++.-...  +...       .
T Consensus       113 ~~v~lw~~~~~~~~~~~~~~-~~~~--v~~v~~s--~--~~~~l~~~~~dg~i~iwd~~~~~~~~~--~~~~-------~  176 (401)
T 4aez_A          113 RNVYVWNADSGSVSALAETD-ESTY--VASVKWS--H--DGSFLSVGLGNGLVDIYDVESQTKLRT--MAGH-------Q  176 (401)
T ss_dssp             TEEEEEETTTCCEEEEEECC-TTCC--EEEEEEC--T--TSSEEEEEETTSCEEEEETTTCCEEEE--ECCC-------S
T ss_pred             CeEEEeeCCCCcEeEeeecC-CCCC--EEEEEEC--C--CCCEEEEECCCCeEEEEECcCCeEEEE--ecCC-------C
Confidence            47999999998876544321 1111  2233343  1  112333334466799999877653211  1100       0


Q ss_pred             cccceEEECCEEEEEEcCCCeEEEEECCCCeEEEeecCCCCCCCCceEEEE--CCeEEEEEEEeeCCccEEEEEEEecCC
Q 012227          305 FRSQAVSVDGILYFMRSDPEGIVSYNMVTGVWKQFIIPTPLHLNDHTLAEC--GGRIMLVGLLTKNAATCVCIWELQKMT  382 (468)
Q Consensus       305 ~~~~~v~~~G~lY~~~~~~~~i~~fD~~~~~w~~i~~P~p~~~~~~~l~~~--~G~L~lv~~~~~~~~~~i~Vw~ld~~~  382 (468)
                      ..-..+..++.+.+.+.....|..+|+.+..-.......  +.....-+.+  +|++++++..    ...+.||.+....
T Consensus       177 ~~v~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~--~~~~v~~~~~~~~~~~l~s~~~----d~~v~iwd~~~~~  250 (401)
T 4aez_A          177 ARVGCLSWNRHVLSSGSRSGAIHHHDVRIANHQIGTLQG--HSSEVCGLAWRSDGLQLASGGN----DNVVQIWDARSSI  250 (401)
T ss_dssp             SCEEEEEEETTEEEEEETTSEEEEEETTSSSCEEEEEEC--CSSCEEEEEECTTSSEEEEEET----TSCEEEEETTCSS
T ss_pred             CceEEEEECCCEEEEEcCCCCEEEEecccCcceeeEEcC--CCCCeeEEEEcCCCCEEEEEeC----CCeEEEccCCCCC
Confidence            012234446666666666678999999843221111111  1111222222  6666665542    2467888655321


Q ss_pred             CCeEEEEeeChhhhhcccCcceEEEEEecCCEEEEEeeeCCCCeEEEEECCCCcEE
Q 012227          383 LLWKEVDRMPNIWCLDFYGKHVRMTCLGNKGLLMLSLRSRQMNRLVTYNVMSREWL  438 (468)
Q Consensus       383 ~~W~~v~~mp~~~~~~~~~~~~~~~~~~~~~~I~~~~~~~~~~~l~~YD~~t~~w~  438 (468)
                          .+..+...     ......+.....++.+++...+...+.+.+||+.+++..
T Consensus       251 ----~~~~~~~~-----~~~v~~~~~~p~~~~ll~~~~gs~d~~i~i~d~~~~~~~  297 (401)
T 4aez_A          251 ----PKFTKTNH-----NAAVKAVAWCPWQSNLLATGGGTMDKQIHFWNAATGARV  297 (401)
T ss_dssp             ----EEEEECCC-----SSCCCEEEECTTSTTEEEEECCTTTCEEEEEETTTCCEE
T ss_pred             ----ccEEecCC-----cceEEEEEECCCCCCEEEEecCCCCCEEEEEECCCCCEE
Confidence                11112100     000001212223444444332224567888888777543

>3q7m_A Lipoprotein YFGL, BAMB; beta-propeller, BAM complex, outer membrane protein folding, negative, BAMA, protein binding; 1.65A {Escherichia coli} PDB: 3q7n_A 3q7o_A 3p1l_A 3prw_A 2yh3_A 3q54_A

Probab=93.21  E-value=5.9  Score=37.60  Aligned_cols=186  Identities=18%  Similarity=0.221  Sum_probs=99.1

Q ss_pred             eeecCceEEEEEcCCceEEEEcCCCCceE--e-cCCCCcCCcceeEEEEEEcCCCCCCCeEEEEEEecCcEEEEeCCCCC
Q 012227          210 VASAGGLVCFLDIGHRNFYVCNPLTQSFK--E-LPARSVKVWSRVAVGMTLNGNSTSSGYKILWVGCDGEYEIYDSLRNS  286 (468)
Q Consensus       210 ~~s~~GLl~~~~~~~~~~~V~NP~T~~~~--~-LP~~~~~~~~~~~~~~~~d~~~~~~~ykVv~v~~~~~v~vy~s~t~~  286 (468)
                      ....+|.|++.... ..++.+|+.|++..  . ++.. .  ....   ...+       -+|++...++.+..||..+++
T Consensus        99 ~~~~~~~v~v~~~~-g~l~a~d~~tG~~~W~~~~~~~-~--~~~p---~~~~-------~~v~v~~~~g~l~~~d~~tG~  164 (376)
T 3q7m_A           99 VTVSGGHVYIGSEK-AQVYALNTSDGTVAWQTKVAGE-A--LSRP---VVSD-------GLVLIHTSNGQLQALNEADGA  164 (376)
T ss_dssp             EEEETTEEEEEETT-SEEEEEETTTCCEEEEEECSSC-C--CSCC---EEET-------TEEEEECTTSEEEEEETTTCC
T ss_pred             ceEeCCEEEEEcCC-CEEEEEECCCCCEEEEEeCCCc-e--EcCC---EEEC-------CEEEEEcCCCeEEEEECCCCc
Confidence            45567888776543 47999999998743  2 2211 1  0101   1112       255544445568899987665


Q ss_pred             --ccCCCCCCCCcccCcccccccceEEECCEEEEEEcCCCeEEEEECCCC--eEEEeecCCCCCC--------CCceEEE
Q 012227          287 --WTRPGSMPSNIKLPVSLNFRSQAVSVDGILYFMRSDPEGIVSYNMVTG--VWKQFIIPTPLHL--------NDHTLAE  354 (468)
Q Consensus       287 --W~~~~~~p~~~~~~~~~~~~~~~v~~~G~lY~~~~~~~~i~~fD~~~~--~w~~i~~P~p~~~--------~~~~l~~  354 (468)
                        |+.....+..     ........+..+|.+|+-. ....+.+||+.++  .|..- .+.+...        .....+.
T Consensus       165 ~~W~~~~~~~~~-----~~~~~~~~~~~~~~v~~g~-~~g~l~~~d~~tG~~~w~~~-~~~~~~~~~~~~~~~~~~~p~~  237 (376)
T 3q7m_A          165 VKWTVNLDMPSL-----SLRGESAPTTAFGAAVVGG-DNGRVSAVLMEQGQMIWQQR-ISQATGSTEIDRLSDVDTTPVV  237 (376)
T ss_dssp             EEEEEECCC----------CCCCCCEEETTEEEECC-TTTEEEEEETTTCCEEEEEE-CCC-----------CCCCCCEE
T ss_pred             EEEEEeCCCCce-----eecCCCCcEEECCEEEEEc-CCCEEEEEECCCCcEEEEEe-cccCCCCcccccccccCCCcEE
Confidence              8753221110     0011234556788887744 4468999999765  45542 3222111        1123345


Q ss_pred             ECCeEEEEEEEeeCCccEEEEEEEecC--CCCeEEEEeeChhhhhcccCcceEEEEEecCCEEEEEeeeCCCCeEEEEEC
Q 012227          355 CGGRIMLVGLLTKNAATCVCIWELQKM--TLLWKEVDRMPNIWCLDFYGKHVRMTCLGNKGLLMLSLRSRQMNRLVTYNV  432 (468)
Q Consensus       355 ~~G~L~lv~~~~~~~~~~i~Vw~ld~~--~~~W~~v~~mp~~~~~~~~~~~~~~~~~~~~~~I~~~~~~~~~~~l~~YD~  432 (468)
                      .+|.||+... .    .  .++.++..  +..|..-  .+.           ....+..++.||+...   .+.+++||+
T Consensus       238 ~~~~v~~~~~-~----g--~l~~~d~~tG~~~w~~~--~~~-----------~~~~~~~~~~l~~~~~---~g~l~~~d~  294 (376)
T 3q7m_A          238 VNGVVFALAY-N----G--NLTALDLRSGQIMWKRE--LGS-----------VNDFIVDGNRIYLVDQ---NDRVMALTI  294 (376)
T ss_dssp             ETTEEEEECT-T----S--CEEEEETTTCCEEEEEC--CCC-----------EEEEEEETTEEEEEET---TCCEEEEET
T ss_pred             ECCEEEEEec-C----c--EEEEEECCCCcEEeecc--CCC-----------CCCceEECCEEEEEcC---CCeEEEEEC
Confidence            6888887541 1    1  35555654  3356542  110           0112234788887532   457999999


Q ss_pred             CCCcEEE
Q 012227          433 MSREWLK  439 (468)
Q Consensus       433 ~t~~w~~  439 (468)
                      ++++..+
T Consensus       295 ~tG~~~w  301 (376)
T 3q7m_A          295 DGGVTLW  301 (376)
T ss_dssp             TTCCEEE
T ss_pred             CCCcEEE
Confidence            9886443

>3v64_C Agrin; beta propeller, laminin-G, signaling, protein binding; HET: NAG; 2.85A {Rattus norvegicus}

Probab=92.98  E-value=6.4  Score=37.38  Aligned_cols=189  Identities=14%  Similarity=0.086  Sum_probs=99.2

Q ss_pred             eeecCceEEEEEcCCceEEEEcCCCCceEecCCCCcCCcceeEEEEEEcCCCCCCCeEEEEEEec-CcEEEEeCCCCCcc
Q 012227          210 VASAGGLVCFLDIGHRNFYVCNPLTQSFKELPARSVKVWSRVAVGMTLNGNSTSSGYKILWVGCD-GEYEIYDSLRNSWT  288 (468)
Q Consensus       210 ~~s~~GLl~~~~~~~~~~~V~NP~T~~~~~LP~~~~~~~~~~~~~~~~d~~~~~~~ykVv~v~~~-~~v~vy~s~t~~W~  288 (468)
                      ....+|.|++.+....+++.+++.++....+......  .  ..++.+|  .  ...+||+.... ..+++++.....-+
T Consensus        80 ~d~~~~~ly~~D~~~~~I~r~~~~g~~~~~~~~~~~~--~--p~glavd--~--~~g~ly~~d~~~~~I~~~~~dG~~~~  151 (349)
T 3v64_C           80 FHHRRELVFWSDVTLDRILRANLNGSNVEEVVSTGLE--S--PGGLAVD--W--VHDKLYWTDSGTSRIEVANLDGAHRK  151 (349)
T ss_dssp             EETTTTEEEEEETTTTEEEEEETTSCSCEEEECSSCS--C--CCEEEEE--T--TTTEEEEEETTTTEEEEEETTSCSCE
T ss_pred             EeccccEEEEEeccCCceEEEecCCCCceEEEeCCCC--C--ccEEEEe--c--CCCeEEEEcCCCCeEEEEcCCCCceE
Confidence            3456888998887777899999988765544322111  1  1344455  1  12466665543 35888887643322


Q ss_pred             CCCCCCCCcccCcccccccceEEE---CCEEEEEEcCC-CeEEEEECCCCeEEEeecCCCCCCCC-ceEEEE--CCeEEE
Q 012227          289 RPGSMPSNIKLPVSLNFRSQAVSV---DGILYFMRSDP-EGIVSYNMVTGVWKQFIIPTPLHLND-HTLAEC--GGRIML  361 (468)
Q Consensus       289 ~~~~~p~~~~~~~~~~~~~~~v~~---~G~lY~~~~~~-~~i~~fD~~~~~w~~i~~P~p~~~~~-~~l~~~--~G~L~l  361 (468)
                      .+.  .....       ...++.+   +|.+||..... ..|..+|+....-..+ ..  ..... ..++..  +|+||+
T Consensus       152 ~l~--~~~l~-------~P~~iavdp~~g~ly~td~~~~~~I~r~~~dG~~~~~~-~~--~~~~~PnGla~d~~~~~lY~  219 (349)
T 3v64_C          152 VLL--WQSLE-------KPRAIALHPMEGTIYWTDWGNTPRIEASSMDGSGRRII-AD--THLFWPNGLTIDYAGRRMYW  219 (349)
T ss_dssp             EEE--CTTCS-------CEEEEEEETTTTEEEEEECSSSCEEEEEETTSCSCEES-CC--SSCSCEEEEEEETTTTEEEE
T ss_pred             EEE--eCCCC-------CcceEEEecCcCeEEEeccCCCCEEEEEeCCCCCcEEE-EE--CCCCCcceEEEeCCCCEEEE
Confidence            111  01111       1123333   68999998765 7899999986544433 11  11111 234443  788998


Q ss_pred             EEEEeeCCccEEEEEEEecCCCCeEEEEeeChhhhhcccCcceEEEEEecCCEEEEEeeeCCCCeEEEEECCCC
Q 012227          362 VGLLTKNAATCVCIWELQKMTLLWKEVDRMPNIWCLDFYGKHVRMTCLGNKGLLMLSLRSRQMNRLVTYNVMSR  435 (468)
Q Consensus       362 v~~~~~~~~~~i~Vw~ld~~~~~W~~v~~mp~~~~~~~~~~~~~~~~~~~~~~I~~~~~~~~~~~l~~YD~~t~  435 (468)
                      +...    ..  .|++++.....=..+....         ...+......++.||+..  .....|..+|..++
T Consensus       220 aD~~----~~--~I~~~~~dG~~~~~~~~~~---------~~~P~giav~~~~ly~td--~~~~~V~~~~~~~G  276 (349)
T 3v64_C          220 VDAK----HH--VIERANLDGSHRKAVISQG---------LPHPFAITVFEDSLYWTD--WHTKSINSANKFTG  276 (349)
T ss_dssp             EETT----TT--EEEEEETTSCSCEEEECSS---------CSSEEEEEEETTEEEEEE--TTTTEEEEEETTTC
T ss_pred             EECC----CC--EEEEEeCCCCceEEEEeCC---------CCCceEEEEECCEEEEec--CCCCeEEEEEccCC
Confidence            7532    23  4555564322112221111         001222222467887743  34568889995444

>1rwi_B Serine/threonine-protein kinase PKND; beta propeller, structural genomics, PSI, protein structure initiative; 1.80A {Mycobacterium tuberculosis} SCOP: b.68.9.1 PDB: 1rwl_A

Probab=92.88  E-value=4.9  Score=35.78  Aligned_cols=185  Identities=12%  Similarity=0.152  Sum_probs=94.7

Q ss_pred             cCceEEEEEcCCceEEEEcCCCCceEecCCCCcCCcceeEEEEEEcCCCCCCCeEEEEEEe-cCcEEEEeCCCCCccCCC
Q 012227          213 AGGLVCFLDIGHRNFYVCNPLTQSFKELPARSVKVWSRVAVGMTLNGNSTSSGYKILWVGC-DGEYEIYDSLRNSWTRPG  291 (468)
Q Consensus       213 ~~GLl~~~~~~~~~~~V~NP~T~~~~~LP~~~~~~~~~~~~~~~~d~~~~~~~ykVv~v~~-~~~v~vy~s~t~~W~~~~  291 (468)
                      .+|-+++.+. ...++++|+.++....++.....    ...++.++  +.   .++++... .+.+.+|+.++.......
T Consensus        76 ~~g~l~v~~~-~~~i~~~d~~~~~~~~~~~~~~~----~p~~i~~~--~~---g~l~v~~~~~~~i~~~~~~~~~~~~~~  145 (270)
T 1rwi_B           76 GAGTVYVTDF-NNRVVTLAAGSNNQTVLPFDGLN----YPEGLAVD--TQ---GAVYVADRGNNRVVKLAAGSKTQTVLP  145 (270)
T ss_dssp             TTCCEEEEET-TTEEEEECTTCSCCEECCCCSCS----SEEEEEEC--TT---CCEEEEEGGGTEEEEECTTCCSCEECC
T ss_pred             CCCCEEEEcC-CCEEEEEeCCCceEeeeecCCcC----CCcceEEC--CC---CCEEEEECCCCEEEEEECCCceeEeec
Confidence            3566777665 56899999988876666532211    12445555  21   24555443 345888876655433221


Q ss_pred             CCCCCcccCcccccccceEEE--CCEEEEEEcCCCeEEEEECCCCeEEEeecCCCCCCCC-ceEEEE-CCeEEEEEEEee
Q 012227          292 SMPSNIKLPVSLNFRSQAVSV--DGILYFMRSDPEGIVSYNMVTGVWKQFIIPTPLHLND-HTLAEC-GGRIMLVGLLTK  367 (468)
Q Consensus       292 ~~p~~~~~~~~~~~~~~~v~~--~G~lY~~~~~~~~i~~fD~~~~~w~~i~~P~p~~~~~-~~l~~~-~G~L~lv~~~~~  367 (468)
                      .  ....       ...++.+  +|.+|+.......|..||+.+......  ... .... ..++.. +|.||+....  
T Consensus       146 ~--~~~~-------~p~~i~~~~~g~l~v~~~~~~~i~~~~~~~~~~~~~--~~~-~~~~p~~i~~d~~g~l~v~~~~--  211 (270)
T 1rwi_B          146 F--TGLN-------DPDGVAVDNSGNVYVTDTDNNRVVKLEAESNNQVVL--PFT-DITAPWGIAVDEAGTVYVTEHN--  211 (270)
T ss_dssp             C--CSCC-------SCCCEEECTTCCEEEEEGGGTEEEEECTTTCCEEEC--CCS-SCCSEEEEEECTTCCEEEEETT--
T ss_pred             c--ccCC-------CceeEEEeCCCCEEEEECCCCEEEEEecCCCceEee--ccc-CCCCceEEEECCCCCEEEEECC--
Confidence            1  0100       1123333  588888876556899999988765432  111 1112 233332 5788876421  


Q ss_pred             CCccEEEEEEEecCCCCeEEEEeeChhhhhcccCcceE-EEEEecCCEEEEEeeeCCCCeEEEEECCCCc
Q 012227          368 NAATCVCIWELQKMTLLWKEVDRMPNIWCLDFYGKHVR-MTCLGNKGLLMLSLRSRQMNRLVTYNVMSRE  436 (468)
Q Consensus       368 ~~~~~i~Vw~ld~~~~~W~~v~~mp~~~~~~~~~~~~~-~~~~~~~~~I~~~~~~~~~~~l~~YD~~t~~  436 (468)
                        ..  .|++++.....-..   .+..      +...+ -.++..+|.||+...  ..+.|.+|++...+
T Consensus       212 --~~--~v~~~~~~~~~~~~---~~~~------~~~~p~~i~~~~~g~l~v~~~--~~~~v~~~~~~~~~  266 (270)
T 1rwi_B          212 --TN--QVVKLLAGSTTSTV---LPFT------GLNTPLAVAVDSDRTVYVADR--GNDRVVKLTSLEHH  266 (270)
T ss_dssp             --TS--CEEEECTTCSCCEE---CCCC------SCSCEEEEEECTTCCEEEEEG--GGTEEEEECCCGGG
T ss_pred             --CC--cEEEEcCCCCccee---eccC------CCCCceeEEECCCCCEEEEEC--CCCEEEEEcCCCcc
Confidence              12  34445554322111   1100      00111 223344566776432  35688999887654

>2iwa_A Glutamine cyclotransferase; pyroglutamate, acyltransferase, glutaminyl CYCL N-terminal cyclisation; HET: NAG; 1.6A {Carica papaya} PDB: 2faw_A*

Probab=92.79  E-value=1.2  Score=40.89  Aligned_cols=105  Identities=9%  Similarity=-0.017  Sum_probs=65.4

Q ss_pred             CEEEEEEc--CCCeEEEEECCCCeEEEeecCCCCCCCCceEEEECCeEEEEEEEeeCCccEEEEEEEecCCCCeEEEEee
Q 012227          314 GILYFMRS--DPEGIVSYNMVTGVWKQFIIPTPLHLNDHTLAECGGRIMLVGLLTKNAATCVCIWELQKMTLLWKEVDRM  391 (468)
Q Consensus       314 G~lY~~~~--~~~~i~~fD~~~~~w~~i~~P~p~~~~~~~l~~~~G~L~lv~~~~~~~~~~i~Vw~ld~~~~~W~~v~~m  391 (468)
                      |.+|.-.+  ....|..+|+.+++-..- ++.+.......++..+++||++....+      .|+++|..  ..+.+.++
T Consensus        32 g~Lyvstg~~~~s~v~~iD~~tg~v~~~-i~l~~~~fgeGi~~~g~~lyv~t~~~~------~v~viD~~--t~~v~~~i  102 (266)
T 2iwa_A           32 DTLFESTGLYGRSSVRQVALQTGKVENI-HKMDDSYFGEGLTLLNEKLYQVVWLKN------IGFIYDRR--TLSNIKNF  102 (266)
T ss_dssp             TEEEEEECSTTTCEEEEEETTTCCEEEE-EECCTTCCEEEEEEETTEEEEEETTCS------EEEEEETT--TTEEEEEE
T ss_pred             CeEEEECCCCCCCEEEEEECCCCCEEEE-EecCCCcceEEEEEeCCEEEEEEecCC------EEEEEECC--CCcEEEEE
Confidence            78898764  246899999998875542 344333333456667889998764222      57777864  45666666


Q ss_pred             ChhhhhcccCcceEEEEEecCCEEEEEeeeCCCCeEEEEECCCCcE
Q 012227          392 PNIWCLDFYGKHVRMTCLGNKGLLMLSLRSRQMNRLVTYNVMSREW  437 (468)
Q Consensus       392 p~~~~~~~~~~~~~~~~~~~~~~I~~~~~~~~~~~l~~YD~~t~~w  437 (468)
                      +.. ..  .    .+....+++.+|++.   ..+.+.+.|+++.+.
T Consensus       103 ~~g-~~--~----g~glt~Dg~~l~vs~---gs~~l~viD~~t~~v  138 (266)
T 2iwa_A          103 THQ-MK--D----GWGLATDGKILYGSD---GTSILYEIDPHTFKL  138 (266)
T ss_dssp             ECC-SS--S----CCEEEECSSSEEEEC---SSSEEEEECTTTCCE
T ss_pred             ECC-CC--C----eEEEEECCCEEEEEC---CCCeEEEEECCCCcE
Confidence            533 11  1    122333567787653   257899999988653

>2ovr_B FBW7, F-BOX/WD repeat protein 7, F-box PROT; WD40 domains, double phosphorylation, transcription-C complex; HET: TPO; 2.50A {Homo sapiens} SCOP: a.158.1.1 b.69.4.1 PDB: 2ovp_B* 2ovq_B*

Probab=92.59  E-value=8  Score=37.55  Aligned_cols=133  Identities=12%  Similarity=0.188  Sum_probs=67.5

Q ss_pred             CCceEEEEcCCCCceEe-cCCCCcCCcceeEEEEEEcCCCCCCCeEEEEEEecCcEEEEeCCCCCccCCCCCCCCcccCc
Q 012227          223 GHRNFYVCNPLTQSFKE-LPARSVKVWSRVAVGMTLNGNSTSSGYKILWVGCDGEYEIYDSLRNSWTRPGSMPSNIKLPV  301 (468)
Q Consensus       223 ~~~~~~V~NP~T~~~~~-LP~~~~~~~~~~~~~~~~d~~~~~~~ykVv~v~~~~~v~vy~s~t~~W~~~~~~p~~~~~~~  301 (468)
                      ....+.+||..+++... +..   ....  ...+.++      ...++..+.++.+.+||..++.-..  .+...     
T Consensus       257 ~dg~i~iwd~~~~~~~~~~~~---~~~~--v~~~~~~------~~~l~~~~~d~~i~i~d~~~~~~~~--~~~~~-----  318 (445)
T 2ovr_B          257 YDFMVKVWDPETETCLHTLQG---HTNR--VYSLQFD------GIHVVSGSLDTSIRVWDVETGNCIH--TLTGH-----  318 (445)
T ss_dssp             TTSCEEEEEGGGTEEEEEECC---CSSC--EEEEEEC------SSEEEEEETTSCEEEEETTTCCEEE--EECCC-----
T ss_pred             CCCEEEEEECCCCcEeEEecC---CCCc--eEEEEEC------CCEEEEEeCCCeEEEEECCCCCEEE--EEcCC-----
Confidence            34567888877765432 221   1111  1223333      1244444556679999987754211  11100     


Q ss_pred             ccccccceEEECCEEEEEEcCCCeEEEEECCCCeEEEeecCCCC-CCCCceEEEECCeEEEEEEEeeCCccEEEEEEEec
Q 012227          302 SLNFRSQAVSVDGILYFMRSDPEGIVSYNMVTGVWKQFIIPTPL-HLNDHTLAECGGRIMLVGLLTKNAATCVCIWELQK  380 (468)
Q Consensus       302 ~~~~~~~~v~~~G~lY~~~~~~~~i~~fD~~~~~w~~i~~P~p~-~~~~~~l~~~~G~L~lv~~~~~~~~~~i~Vw~ld~  380 (468)
                        ......+..+|...+.+.....|..||+.+.+-... +..+. +.....-+..++++.+++..    ...+.||.+..
T Consensus       319 --~~~v~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~-~~~~~~~~~~v~~~~~~~~~l~s~~~----dg~v~iwd~~~  391 (445)
T 2ovr_B          319 --QSLTSGMELKDNILVSGNADSTVKIWDIKTGQCLQT-LQGPNKHQSAVTCLQFNKNFVITSSD----DGTVKLWDLKT  391 (445)
T ss_dssp             --CSCEEEEEEETTEEEEEETTSCEEEEETTTCCEEEE-ECSTTSCSSCEEEEEECSSEEEEEET----TSEEEEEETTT
T ss_pred             --cccEEEEEEeCCEEEEEeCCCeEEEEECCCCcEEEE-EccCCCCCCCEEEEEECCCEEEEEeC----CCeEEEEECCC
Confidence              001123344565555565667899999987654332 22211 22223334557777665542    25789996543

>1k8k_C P40, ARP2/3 complex 41 kDa subunit, P41-ARC; beta-propeller, structural protein; 2.00A {Bos taurus} SCOP: b.69.4.1 PDB: 1tyq_C* 1u2v_C* 2p9i_C* 2p9k_C* 2p9l_C 2p9n_C* 2p9p_C* 2p9s_C* 2p9u_C* 3rse_C 3dxm_C* 3dxk_C

Probab=92.10  E-value=4.4  Score=37.90  Aligned_cols=149  Identities=9%  Similarity=0.053  Sum_probs=68.9

Q ss_pred             CceEEEEEcCCceEEEEcCCCCceEecCCCCcCCcceeEEEEEEcCCCCCCCeEEEEEEecCcEEEEeCCCCCccCCCCC
Q 012227          214 GGLVCFLDIGHRNFYVCNPLTQSFKELPARSVKVWSRVAVGMTLNGNSTSSGYKILWVGCDGEYEIYDSLRNSWTRPGSM  293 (468)
Q Consensus       214 ~GLl~~~~~~~~~~~V~NP~T~~~~~LP~~~~~~~~~~~~~~~~d~~~~~~~ykVv~v~~~~~v~vy~s~t~~W~~~~~~  293 (468)
                      +|-+++.......+.+||..++++..+-.........  ..+.+.  +  +.-.++..+.++.+.+||..++.+......
T Consensus        19 ~~~~l~~~~~d~~v~i~~~~~~~~~~~~~~~~h~~~v--~~~~~~--~--~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~   92 (372)
T 1k8k_C           19 DRTQIAICPNNHEVHIYEKSGNKWVQVHELKEHNGQV--TGVDWA--P--DSNRIVTCGTDRNAYVWTLKGRTWKPTLVI   92 (372)
T ss_dssp             TSSEEEEECSSSEEEEEEEETTEEEEEEEEECCSSCE--EEEEEE--T--TTTEEEEEETTSCEEEEEEETTEEEEEEEC
T ss_pred             CCCEEEEEeCCCEEEEEeCCCCcEEeeeeecCCCCcc--cEEEEe--C--CCCEEEEEcCCCeEEEEECCCCeeeeeEEe
Confidence            4433444434557889998888643332221111122  223333  1  112344444456799999988776433111


Q ss_pred             CCCcccCcccccccceEEE--CCEEEEEEcCCCeEEEEECCCCe-EEEe-ecCCCCCCCCceEEEE-CCeEEEEEEEeeC
Q 012227          294 PSNIKLPVSLNFRSQAVSV--DGILYFMRSDPEGIVSYNMVTGV-WKQF-IIPTPLHLNDHTLAEC-GGRIMLVGLLTKN  368 (468)
Q Consensus       294 p~~~~~~~~~~~~~~~v~~--~G~lY~~~~~~~~i~~fD~~~~~-w~~i-~~P~p~~~~~~~l~~~-~G~L~lv~~~~~~  368 (468)
                      ....       ..-..+.+  +|...+.+.....|..||+.+.. +... ....+....-..+... +|++++++..   
T Consensus        93 ~~~~-------~~v~~~~~~~~~~~l~~~~~d~~v~i~d~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~---  162 (372)
T 1k8k_C           93 LRIN-------RAARCVRWAPNEKKFAVGSGSRVISICYFEQENDWWVCKHIKKPIRSTVLSLDWHPNSVLLAAGSC---  162 (372)
T ss_dssp             CCCS-------SCEEEEEECTTSSEEEEEETTSSEEEEEEETTTTEEEEEEECTTCCSCEEEEEECTTSSEEEEEET---
T ss_pred             ecCC-------CceeEEEECCCCCEEEEEeCCCEEEEEEecCCCcceeeeeeecccCCCeeEEEEcCCCCEEEEEcC---
Confidence            1110       01112222  45555555555678888877653 2221 1111111111122222 5666555432   


Q ss_pred             CccEEEEEEEe
Q 012227          369 AATCVCIWELQ  379 (468)
Q Consensus       369 ~~~~i~Vw~ld  379 (468)
                       ...+.+|.+.
T Consensus       163 -dg~i~~~d~~  172 (372)
T 1k8k_C          163 -DFKCRIFSAY  172 (372)
T ss_dssp             -TSCEEEEECC
T ss_pred             -CCCEEEEEcc
Confidence             2467888653

>2ojh_A Uncharacterized protein ATU1656/AGR_C_3050; TOLB, 6-stranded beta-propeller, structural genomics, PSI-2; 1.85A {Agrobacterium tumefaciens str}

Probab=92.04  E-value=6.3  Score=35.06  Aligned_cols=187  Identities=10%  Similarity=-0.004  Sum_probs=92.4

Q ss_pred             CceEEEEcCCCCceEecCCCCcCCcceeEEEEEEcCCCCCCCeEEEEEEecCcEEEEeCCC-CCccCCCCCCCCcccCcc
Q 012227          224 HRNFYVCNPLTQSFKELPARSVKVWSRVAVGMTLNGNSTSSGYKILWVGCDGEYEIYDSLR-NSWTRPGSMPSNIKLPVS  302 (468)
Q Consensus       224 ~~~~~V~NP~T~~~~~LP~~~~~~~~~~~~~~~~d~~~~~~~ykVv~v~~~~~v~vy~s~t-~~W~~~~~~p~~~~~~~~  302 (468)
                      ...+++||+.+++...+.....   ..  .++.+.+   .  .+.++++.++.+.+||..+ +....+.......     
T Consensus        21 ~~~i~~~d~~~~~~~~~~~~~~---~v--~~~~~sp---d--g~~l~~~~~~~i~~~d~~~~~~~~~~~~~~~~~-----   85 (297)
T 2ojh_A           21 RSSIEIFNIRTRKMRVVWQTPE---LF--EAPNWSP---D--GKYLLLNSEGLLYRLSLAGDPSPEKVDTGFATI-----   85 (297)
T ss_dssp             CEEEEEEETTTTEEEEEEEESS---CC--EEEEECT---T--SSEEEEEETTEEEEEESSSCCSCEECCCTTCCC-----
T ss_pred             ceeEEEEeCCCCceeeeccCCc---ce--EeeEECC---C--CCEEEEEcCCeEEEEeCCCCCCceEeccccccc-----
Confidence            4579999999988776544211   11  2233331   1  2333445667799999988 7665443211100     


Q ss_pred             cccccceEEECCEEEEEEc----CCCeEEEEECCCCeEEEeecCCCCCCCCceEEEE-CCeEEEEEEEeeCCccEEEEEE
Q 012227          303 LNFRSQAVSVDGILYFMRS----DPEGIVSYNMVTGVWKQFIIPTPLHLNDHTLAEC-GGRIMLVGLLTKNAATCVCIWE  377 (468)
Q Consensus       303 ~~~~~~~v~~~G~lY~~~~----~~~~i~~fD~~~~~w~~i~~P~p~~~~~~~l~~~-~G~L~lv~~~~~~~~~~i~Vw~  377 (468)
                       ........-+|...+...    ....|..+|..+.....+...  .  ....+.-. +|+..++.....   ..+.||.
T Consensus        86 -~~~~~~~spdg~~l~~~~~~~~~~~~l~~~~~~~~~~~~~~~~--~--~~~~~~~spdg~~l~~~~~~~---~~~~l~~  157 (297)
T 2ojh_A           86 -CNNDHGISPDGALYAISDKVEFGKSAIYLLPSTGGTPRLMTKN--L--PSYWHGWSPDGKSFTYCGIRD---QVFDIYS  157 (297)
T ss_dssp             -BCSCCEECTTSSEEEEEECTTTSSCEEEEEETTCCCCEECCSS--S--SEEEEEECTTSSEEEEEEEET---TEEEEEE
T ss_pred             -cccceEECCCCCEEEEEEeCCCCcceEEEEECCCCceEEeecC--C--CccceEECCCCCEEEEEECCC---CceEEEE
Confidence             000111112454333332    135688888877665443211  1  11112222 566544333222   4579999


Q ss_pred             EecCCCCeEEEEeeChhhhhcccCcceEEEEEe-cCCEEEEEeeeCCCCeEEEEECCCCcEEEccC
Q 012227          378 LQKMTLLWKEVDRMPNIWCLDFYGKHVRMTCLG-NKGLLMLSLRSRQMNRLVTYNVMSREWLKVPG  442 (468)
Q Consensus       378 ld~~~~~W~~v~~mp~~~~~~~~~~~~~~~~~~-~~~~I~~~~~~~~~~~l~~YD~~t~~w~~v~~  442 (468)
                      ++..+.....+...+..         .....+. ++..|++.........++.+|+.++....+..
T Consensus       158 ~~~~~~~~~~~~~~~~~---------~~~~~~s~dg~~l~~~~~~~~~~~i~~~~~~~~~~~~~~~  214 (297)
T 2ojh_A          158 MDIDSGVETRLTHGEGR---------NDGPDYSPDGRWIYFNSSRTGQMQIWRVRVDGSSVERITD  214 (297)
T ss_dssp             EETTTCCEEECCCSSSC---------EEEEEECTTSSEEEEEECTTSSCEEEEEETTSSCEEECCC
T ss_pred             EECCCCcceEcccCCCc---------cccceECCCCCEEEEEecCCCCccEEEECCCCCCcEEEec
Confidence            88765554433221110         1112233 44455543322334577888888888877754

>2pm7_B Protein transport protein SEC13, protein transport protein SEC31; beta propeller, alpha solenoid; 2.35A {Saccharomyces cerevisiae} PDB: 2pm9_B 2pm6_B 3iko_A 3mzk_A 3mzl_A

Probab=91.93  E-value=7.3  Score=35.56  Aligned_cols=111  Identities=9%  Similarity=0.047  Sum_probs=51.9

Q ss_pred             cCceEEEEEcCCceEEEEcCCCCceEecCCCCcCCcceeEEEEEEcCCCCCCCeEEEEEEecCcEEEEeCCCCCccCCCC
Q 012227          213 AGGLVCFLDIGHRNFYVCNPLTQSFKELPARSVKVWSRVAVGMTLNGNSTSSGYKILWVGCDGEYEIYDSLRNSWTRPGS  292 (468)
Q Consensus       213 ~~GLl~~~~~~~~~~~V~NP~T~~~~~LP~~~~~~~~~~~~~~~~d~~~~~~~ykVv~v~~~~~v~vy~s~t~~W~~~~~  292 (468)
                      .+|-.++.......+.|||..++....+-....+....  ..+.+.  +....-.++..+.++.+.+||..++.|..+..
T Consensus        19 ~~g~~las~s~D~~v~iw~~~~~~~~~~~~l~gH~~~V--~~v~~s--~~~~g~~l~s~s~D~~v~iWd~~~~~~~~~~~   94 (297)
T 2pm7_B           19 YYGKRMATCSSDKTIKIFEVEGETHKLIDTLTGHEGPV--WRVDWA--HPKFGTILASCSYDGKVMIWKEENGRWSQIAV   94 (297)
T ss_dssp             TTSSEEEEEETTSCEEEEEBCSSCBCCCEEECCCSSCE--EEEEEC--CGGGCSEEEEEETTTEEEEEEBSSSCBCCCEE
T ss_pred             CCCCEEEEEeCCCEEEEEecCCCCcEEEEEEccccCCe--EEEEec--CCCcCCEEEEEcCCCEEEEEEcCCCceEEEEE
Confidence            34444444444456888887644322111111111122  223322  11111234444456679999999888765432


Q ss_pred             CCCCcccCcccccccceEEEC----CEEEEEEcCCCeEEEEECCCC
Q 012227          293 MPSNIKLPVSLNFRSQAVSVD----GILYFMRSDPEGIVSYNMVTG  334 (468)
Q Consensus       293 ~p~~~~~~~~~~~~~~~v~~~----G~lY~~~~~~~~i~~fD~~~~  334 (468)
                      .....       ..-..+.+.    |.+.+.+.....|..+|+.+.
T Consensus        95 ~~~h~-------~~v~~v~~~p~~~g~~l~s~s~d~~v~~wd~~~~  133 (297)
T 2pm7_B           95 HAVHS-------ASVNSVQWAPHEYGPMLLVASSDGKVSVVEFKEN  133 (297)
T ss_dssp             ECCCS-------SCEEEEEECCGGGCSEEEEEETTSEEEEEEBCSS
T ss_pred             eecCC-------CceeEEEeCcCCCCcEEEEEECCCcEEEEEecCC
Confidence            11110       011122231    455555555567888888764

>1erj_A Transcriptional repressor TUP1; beta-propeller, transcription inhibitor; 2.30A {Saccharomyces cerevisiae} SCOP: b.69.4.1

Probab=91.91  E-value=7.5  Score=37.23  Aligned_cols=147  Identities=17%  Similarity=0.124  Sum_probs=73.3

Q ss_pred             ecCceEEEEEcCCceEEEEcCCCCceEecCCCCcCCcceeEEEEEEcCCCCCCCeEEEEEEecCcEEEEeCCCCCccCCC
Q 012227          212 SAGGLVCFLDIGHRNFYVCNPLTQSFKELPARSVKVWSRVAVGMTLNGNSTSSGYKILWVGCDGEYEIYDSLRNSWTRPG  291 (468)
Q Consensus       212 s~~GLl~~~~~~~~~~~V~NP~T~~~~~LP~~~~~~~~~~~~~~~~d~~~~~~~ykVv~v~~~~~v~vy~s~t~~W~~~~  291 (468)
                      +.+|-.++.......+.+||..+++....-.  .+....  ..+.+.+    ..-.++..+.++.+.+||..++.-...-
T Consensus       132 s~dg~~l~s~~~d~~i~iwd~~~~~~~~~~~--~h~~~v--~~~~~~p----~~~~l~s~s~d~~v~iwd~~~~~~~~~~  203 (393)
T 1erj_A          132 SPDGKFLATGAEDRLIRIWDIENRKIVMILQ--GHEQDI--YSLDYFP----SGDKLVSGSGDRTVRIWDLRTGQCSLTL  203 (393)
T ss_dssp             CTTSSEEEEEETTSCEEEEETTTTEEEEEEC--CCSSCE--EEEEECT----TSSEEEEEETTSEEEEEETTTTEEEEEE
T ss_pred             CCCCCEEEEEcCCCeEEEEECCCCcEEEEEc--cCCCCE--EEEEEcC----CCCEEEEecCCCcEEEEECCCCeeEEEE
Confidence            3455555555555689999998877543321  111112  2333331    1224555555677999998876532110


Q ss_pred             CCCCCcccCcccccccceEEE---CCEEEEEEcCCCeEEEEECCCCeEEEe-ecCC---CCCCCCceEEEE--CCeEEEE
Q 012227          292 SMPSNIKLPVSLNFRSQAVSV---DGILYFMRSDPEGIVSYNMVTGVWKQF-IIPT---PLHLNDHTLAEC--GGRIMLV  362 (468)
Q Consensus       292 ~~p~~~~~~~~~~~~~~~v~~---~G~lY~~~~~~~~i~~fD~~~~~w~~i-~~P~---p~~~~~~~l~~~--~G~L~lv  362 (468)
                      ....          ....+.+   +|.+.+.+.....|..||+.++..... ..+.   ..+.....-+.+  +|++.+.
T Consensus       204 ~~~~----------~v~~~~~~~~~~~~l~~~s~d~~v~iwd~~~~~~~~~~~~~~~~~~~h~~~v~~v~~~~~g~~l~s  273 (393)
T 1erj_A          204 SIED----------GVTTVAVSPGDGKYIAAGSLDRAVRVWDSETGFLVERLDSENESGTGHKDSVYSVVFTRDGQSVVS  273 (393)
T ss_dssp             ECSS----------CEEEEEECSTTCCEEEEEETTSCEEEEETTTCCEEEEEC------CCCSSCEEEEEECTTSSEEEE
T ss_pred             EcCC----------CcEEEEEECCCCCEEEEEcCCCcEEEEECCCCcEEEeecccccCCCCCCCCEEEEEECCCCCEEEE
Confidence            0000          0112222   566666666667899999988764332 1111   111111222222  5666554


Q ss_pred             EEEeeCCccEEEEEEEec
Q 012227          363 GLLTKNAATCVCIWELQK  380 (468)
Q Consensus       363 ~~~~~~~~~~i~Vw~ld~  380 (468)
                      +..    ...+.+|.+..
T Consensus       274 ~s~----d~~v~~wd~~~  287 (393)
T 1erj_A          274 GSL----DRSVKLWNLQN  287 (393)
T ss_dssp             EET----TSEEEEEEC--
T ss_pred             EeC----CCEEEEEECCC
Confidence            432    25789997764

>3bws_A Protein LP49; two-domain, immunoglobulin-like, 7-bladed beta propeller, unknown function; 1.99A {Leptospira interrogans}

Probab=91.90  E-value=9.2  Score=36.70  Aligned_cols=196  Identities=10%  Similarity=0.046  Sum_probs=96.7

Q ss_pred             CceEEEEEcCCceEEEEcCCCCceEecCCC-CcCCcceeEEEEEEcCCCCCCCeEEEEEEe-cCcEEEEeCCCCCccCCC
Q 012227          214 GGLVCFLDIGHRNFYVCNPLTQSFKELPAR-SVKVWSRVAVGMTLNGNSTSSGYKILWVGC-DGEYEIYDSLRNSWTRPG  291 (468)
Q Consensus       214 ~GLl~~~~~~~~~~~V~NP~T~~~~~LP~~-~~~~~~~~~~~~~~d~~~~~~~ykVv~v~~-~~~v~vy~s~t~~W~~~~  291 (468)
                      +|.+++.......+.+||+.+++.....+. ..........++.+.+     +.++++.+. ++.+.+||..+++-... 
T Consensus       133 ~~~~~~~~~~~~~i~~~d~~~g~~~~~~~~~~~~~~~~~v~~~~~~~-----~~~~~~s~~~d~~v~~~d~~~~~~~~~-  206 (433)
T 3bws_A          133 NTRLAIPLLEDEGMDVLDINSGQTVRLSPPEKYKKKLGFVETISIPE-----HNELWVSQMQANAVHVFDLKTLAYKAT-  206 (433)
T ss_dssp             SSEEEEEBTTSSSEEEEETTTCCEEEECCCHHHHTTCCEEEEEEEGG-----GTEEEEEEGGGTEEEEEETTTCCEEEE-
T ss_pred             CCeEEEEeCCCCeEEEEECCCCeEeeecCcccccccCCceeEEEEcC-----CCEEEEEECCCCEEEEEECCCceEEEE-
Confidence            677777766666799999999887754332 1111111122233331     134554443 46699999876543211 


Q ss_pred             CCCCCcccCcccccccceEEE--CC-EEEEEEcCCCeEEEEECCCCeEEEeecCCCCCCCCceEEEE-CCeEEEEEEEee
Q 012227          292 SMPSNIKLPVSLNFRSQAVSV--DG-ILYFMRSDPEGIVSYNMVTGVWKQFIIPTPLHLNDHTLAEC-GGRIMLVGLLTK  367 (468)
Q Consensus       292 ~~p~~~~~~~~~~~~~~~v~~--~G-~lY~~~~~~~~i~~fD~~~~~w~~i~~P~p~~~~~~~l~~~-~G~L~lv~~~~~  367 (468)
                       +.....       ....+.+  +| .+|+.+.....|..||+.+.+.... ++...  ....+... +|+..+++....
T Consensus       207 -~~~~~~-------~~~~~~~~~~~~~l~~~~~~~~~i~~~d~~~~~~~~~-~~~~~--~~~~~~~~~~g~~l~~~~~~~  275 (433)
T 3bws_A          207 -VDLTGK-------WSKILLYDPIRDLVYCSNWISEDISVIDRKTKLEIRK-TDKIG--LPRGLLLSKDGKELYIAQFSA  275 (433)
T ss_dssp             -EECSSS-------SEEEEEEETTTTEEEEEETTTTEEEEEETTTTEEEEE-CCCCS--EEEEEEECTTSSEEEEEEEES
T ss_pred             -EcCCCC-------CeeEEEEcCCCCEEEEEecCCCcEEEEECCCCcEEEE-ecCCC--CceEEEEcCCCCEEEEEECCC
Confidence             000000       1112222  33 5666665567899999998876443 32211  11122222 565555554432


Q ss_pred             C----CccEEEEEEEecCCCCeEEEEeeChhhhhcccCcceEEEEEe-cCCEEEEEeeeCCCCeEEEEECCCCcEEE
Q 012227          368 N----AATCVCIWELQKMTLLWKEVDRMPNIWCLDFYGKHVRMTCLG-NKGLLMLSLRSRQMNRLVTYNVMSREWLK  439 (468)
Q Consensus       368 ~----~~~~i~Vw~ld~~~~~W~~v~~mp~~~~~~~~~~~~~~~~~~-~~~~I~~~~~~~~~~~l~~YD~~t~~w~~  439 (468)
                      .    ....+.+|.+..  .+-  +..+....       ...-.++. .++.+|+..  ...+.+.+||+++++...
T Consensus       276 ~~~~~~dg~i~~~d~~~--~~~--~~~~~~~~-------~~~~~~~~~~g~~l~~~~--~~~~~v~v~d~~~~~~~~  339 (433)
T 3bws_A          276 SNQESGGGRLGIYSMDK--EKL--IDTIGPPG-------NKRHIVSGNTENKIYVSD--MCCSKIEVYDLKEKKVQK  339 (433)
T ss_dssp             CTTCSCCEEEEEEETTT--TEE--EEEEEEEE-------CEEEEEECSSTTEEEEEE--TTTTEEEEEETTTTEEEE
T ss_pred             CccccCCCeEEEEECCC--CcE--EeeccCCC-------CcceEEECCCCCEEEEEe--cCCCEEEEEECCCCcEEE
Confidence            1    123666774432  322  21221000       00112233 344676542  335789999999876543

>3v9f_A Two-component system sensor histidine kinase/RESP regulator, hybrid (ONE-component...; beta-propeller, beta-sandwich; 3.30A {Bacteroides thetaiotaomicron}

Probab=91.86  E-value=15  Score=38.99  Aligned_cols=197  Identities=12%  Similarity=0.116  Sum_probs=107.1

Q ss_pred             cCceEEEEEcCCceEEEEcCCCCceEecCCCCcCCcceeEEEEEEcCCCCCCCeEEEEEEecCcEEEEeCCCCCccCCCC
Q 012227          213 AGGLVCFLDIGHRNFYVCNPLTQSFKELPARSVKVWSRVAVGMTLNGNSTSSGYKILWVGCDGEYEIYDSLRNSWTRPGS  292 (468)
Q Consensus       213 ~~GLl~~~~~~~~~~~V~NP~T~~~~~LP~~~~~~~~~~~~~~~~d~~~~~~~ykVv~v~~~~~v~vy~s~t~~W~~~~~  292 (468)
                      .+|-|.+... ...++++||.|+++..++......  ....++..|.     +.+ ++++...++.+|+..++.|+....
T Consensus       416 ~~g~lWigt~-~~Gl~~~~~~~~~~~~~~~~~~~~--~~v~~i~~d~-----~g~-lwigt~~Gl~~~~~~~~~~~~~~~  486 (781)
T 3v9f_A          416 SEGNLWFGTY-LGNISYYNTRLKKFQIIELEKNEL--LDVRVFYEDK-----NKK-IWIGTHAGVFVIDLASKKVIHHYD  486 (781)
T ss_dssp             TTSCEEEEET-TEEEEEECSSSCEEEECCSTTTCC--CCEEEEEECT-----TSE-EEEEETTEEEEEESSSSSCCEEEC
T ss_pred             CCCCEEEEec-cCCEEEEcCCCCcEEEeccCCCCC--CeEEEEEECC-----CCC-EEEEECCceEEEeCCCCeEEeccc
Confidence            4666666543 236899999999998876431111  1223344441     234 445555779999999988865432


Q ss_pred             CCCCcccCcccccccceEEE--CCEEEEEEcCCCeEEEEECCCCeEEEeecCCCCCCCC-ceEEE-ECCeEEEEEEEeeC
Q 012227          293 MPSNIKLPVSLNFRSQAVSV--DGILYFMRSDPEGIVSYNMVTGVWKQFIIPTPLHLND-HTLAE-CGGRIMLVGLLTKN  368 (468)
Q Consensus       293 ~p~~~~~~~~~~~~~~~v~~--~G~lY~~~~~~~~i~~fD~~~~~w~~i~~P~p~~~~~-~~l~~-~~G~L~lv~~~~~~  368 (468)
                      .... ..+   ......+..  +|.+++ +.....+..||+.++++..+..+....... ..+.+ .+|.|++...  . 
T Consensus       487 ~~~~-~~~---~~~i~~i~~d~~g~lWi-gt~~~Gl~~~~~~~~~~~~~~~~~~l~~~~i~~i~~d~~g~lWi~T~--~-  558 (781)
T 3v9f_A          487 TSNS-QLL---ENFVRSIAQDSEGRFWI-GTFGGGVGIYTPDMQLVRKFNQYEGFCSNTINQIYRSSKGQMWLATG--E-  558 (781)
T ss_dssp             TTTS-SCS---CSCEEEEEECTTCCEEE-EESSSCEEEECTTCCEEEEECTTTTCSCSCEEEEEECTTSCEEEEET--T-
T ss_pred             Cccc-ccc---cceeEEEEEcCCCCEEE-EEcCCCEEEEeCCCCeEEEccCCCCCCCCeeEEEEECCCCCEEEEEC--C-
Confidence            2110 000   001122333  566654 444357999999999998764322111111 22333 3678876542  1 


Q ss_pred             CccEEEE-EEEecCCCCeEEEEeeChhhhhcccCcceEEEEEecCCEEEEEeeeCCCCeEEEEECCCCcEEEc
Q 012227          369 AATCVCI-WELQKMTLLWKEVDRMPNIWCLDFYGKHVRMTCLGNKGLLMLSLRSRQMNRLVTYNVMSREWLKV  440 (468)
Q Consensus       369 ~~~~i~V-w~ld~~~~~W~~v~~mp~~~~~~~~~~~~~~~~~~~~~~I~~~~~~~~~~~l~~YD~~t~~w~~v  440 (468)
                           .+ ++++..+++++.... ...+    ....+.-.+...+|.|++..    ...+..||+++++++..
T Consensus       559 -----Glv~~~d~~~~~~~~~~~-~~gl----~~~~i~~i~~d~~g~lW~~t----~~Gl~~~~~~~~~~~~~  617 (781)
T 3v9f_A          559 -----GLVCFPSARNFDYQVFQR-KEGL----PNTHIRAISEDKNGNIWAST----NTGISCYITSKKCFYTY  617 (781)
T ss_dssp             -----EEEEESCTTTCCCEEECG-GGTC----SCCCCCEEEECSSSCEEEEC----SSCEEEEETTTTEEEEE
T ss_pred             -----CceEEECCCCCcEEEccc-cCCC----CCceEEEEEECCCCCEEEEc----CCceEEEECCCCceEEe
Confidence                 23 666776666655432 1111    11111122334567887753    24699999999988776

>3m0c_C LDL receptor, low-density lipoprotein receptor; protein complex, beta propeller, cholesterol clearance, PCSK autocatalytic cleavage; 7.01A {Homo sapiens}

Probab=91.78  E-value=3.7  Score=43.93  Aligned_cols=148  Identities=14%  Similarity=0.155  Sum_probs=82.1

Q ss_pred             eeecCceEEEEEcCCceEEEEcCCCCceEecCCCCcCCcceeEEEEEEcCCCCCCCeEEEEEEe-c-CcEEEEeCCCCCc
Q 012227          210 VASAGGLVCFLDIGHRNFYVCNPLTQSFKELPARSVKVWSRVAVGMTLNGNSTSSGYKILWVGC-D-GEYEIYDSLRNSW  287 (468)
Q Consensus       210 ~~s~~GLl~~~~~~~~~~~V~NP~T~~~~~LP~~~~~~~~~~~~~~~~d~~~~~~~ykVv~v~~-~-~~v~vy~s~t~~W  287 (468)
                      +...+|.|++.+....++.+.++-.+..+.|-.....    ...++.+|+  .  ...||+... . ..+++++.....=
T Consensus       478 vD~~~~~LY~tD~~~~~I~v~~ldG~~~~~l~~~~l~----~P~gIaVDp--~--~g~LYwtD~g~~~~I~~~~~dG~~~  549 (791)
T 3m0c_C          478 VDWIHSNIYWTDSVLGTVSVADTKGVKRKTLFRENGS----KPRAIVVDP--V--HGFMYWTDWGTPAKIKKGGLNGVDI  549 (791)
T ss_dssp             EETTTTEEEEEETTTTEEEEEETTSSSEEEEEECTTC----CEEEEEEET--T--TTEEEEEECSSSCEEEEEETTSCCE
T ss_pred             eeecCCcEEEEecCCCeEEEEeCCCCeEEEEEeCCCC----CcceEEEec--C--CCCEEEecCCCCCeEEEEecCCCce
Confidence            5556778888887777888888876665555321111    123455552  1  235666542 2 3477777643221


Q ss_pred             cCCCCCCCCcccCcccccccceEEE---CCEEEEEEcCCCeEEEEECCCCeEEEeecCCCCCC-CCceEEEECCeEEEEE
Q 012227          288 TRPGSMPSNIKLPVSLNFRSQAVSV---DGILYFMRSDPEGIVSYNMVTGVWKQFIIPTPLHL-NDHTLAECGGRIMLVG  363 (468)
Q Consensus       288 ~~~~~~p~~~~~~~~~~~~~~~v~~---~G~lY~~~~~~~~i~~fD~~~~~w~~i~~P~p~~~-~~~~l~~~~G~L~lv~  363 (468)
                      +.+..  ..+.       ...++.+   +|.|||.......|.++|+....-..+ +...... ....|+..+++||++.
T Consensus       550 ~~lv~--~~l~-------~P~GLavD~~~~~LYwaD~~~~~I~~~d~dG~~~~~v-~~~~~~l~~P~glav~~~~lYwtD  619 (791)
T 3m0c_C          550 YSLVT--ENIQ-------WPNGITLDLLSGRLYWVDSKLHSISSIDVNGGNRKTI-LEDEKRLAHPFSLAVFEDKVFWTD  619 (791)
T ss_dssp             EEEEC--SSCS-------CEEEEEEETTTTEEEEEETTTTEEEEEETTSCSCEEE-EECTTTTSSEEEEEEETTEEEEEE
T ss_pred             EEEEe--CCCC-------CceEEEEecCCCeEEEEeCCCCcEEEEecCCCceEEE-ecCCCccCCCCEEEEeCCEEEEEE
Confidence            11110  0111       1224444   589999988778999999976544443 2111111 1235667899999876


Q ss_pred             EEeeCCccEEEEEEEecC
Q 012227          364 LLTKNAATCVCIWELQKM  381 (468)
Q Consensus       364 ~~~~~~~~~i~Vw~ld~~  381 (468)
                      ...      -.|++.+..
T Consensus       620 ~~~------~~I~~~dk~  631 (791)
T 3m0c_C          620 IIN------EAIFSANRL  631 (791)
T ss_dssp             TTT------TEEEEEETT
T ss_pred             CCC------CEEEEEeCC
Confidence            322      266666643

>3g4e_A Regucalcin; six bladed beta-propeller, gluconolcatonase, organophosphate hydrolase, calcium bound, alternative splicing, cytoplasm, phosphoprotein; 1.42A {Homo sapiens} PDB: 3g4h_B

Probab=91.58  E-value=8  Score=35.37  Aligned_cols=193  Identities=11%  Similarity=0.102  Sum_probs=95.9

Q ss_pred             cCceEEEEEcCCceEEEEcCCCCceEecCCCCcCCcceeEEEEEEcCCCCCCCeEEEEEEecCcEEEEeCCCCCccCCCC
Q 012227          213 AGGLVCFLDIGHRNFYVCNPLTQSFKELPARSVKVWSRVAVGMTLNGNSTSSGYKILWVGCDGEYEIYDSLRNSWTRPGS  292 (468)
Q Consensus       213 ~~GLl~~~~~~~~~~~V~NP~T~~~~~LP~~~~~~~~~~~~~~~~d~~~~~~~ykVv~v~~~~~v~vy~s~t~~W~~~~~  292 (468)
                      .+|-|++.+....+++++||.+++...+....    .  ..++..+  +.   .+++ ++....+.+||..+++++.+..
T Consensus        23 ~~~~l~~~d~~~~~i~~~d~~~~~~~~~~~~~----~--~~~i~~~--~d---G~l~-v~~~~~l~~~d~~~g~~~~~~~   90 (297)
T 3g4e_A           23 VSNSLLFVDIPAKKVCRWDSFTKQVQRVTMDA----P--VSSVALR--QS---GGYV-ATIGTKFCALNWKEQSAVVLAT   90 (297)
T ss_dssp             TTTEEEEEETTTTEEEEEETTTCCEEEEECSS----C--EEEEEEB--TT---SSEE-EEETTEEEEEETTTTEEEEEEE
T ss_pred             CCCEEEEEECCCCEEEEEECCCCcEEEEeCCC----c--eEEEEEC--CC---CCEE-EEECCeEEEEECCCCcEEEEEe
Confidence            35666777766678999999998776543321    1  2334444  21   2233 3445679999998888765433


Q ss_pred             CCCCcccCcccccccceEEE--CCEEEEEEc-----------CCCeEEEEECCCCeEEEeecCCCCCCCCceEEEE-CCe
Q 012227          293 MPSNIKLPVSLNFRSQAVSV--DGILYFMRS-----------DPEGIVSYNMVTGVWKQFIIPTPLHLNDHTLAEC-GGR  358 (468)
Q Consensus       293 ~p~~~~~~~~~~~~~~~v~~--~G~lY~~~~-----------~~~~i~~fD~~~~~w~~i~~P~p~~~~~~~l~~~-~G~  358 (468)
                      .....  +.  . ....+.+  +|.+|+-..           ....|..+|.... ...+.....   ....++.. +|+
T Consensus        91 ~~~~~--~~--~-~~~di~~d~dG~l~~~~~~~~~~~~~~~~~~~~l~~~d~~g~-~~~~~~~~~---~pngi~~spdg~  161 (297)
T 3g4e_A           91 VDNDK--KN--N-RFNDGKVDPAGRYFAGTMAEETAPAVLERHQGALYSLFPDHH-VKKYFDQVD---ISNGLDWSLDHK  161 (297)
T ss_dssp             CCTTC--SS--E-EEEEEEECTTSCEEEEEEECCSBTTBCCTTCEEEEEECTTSC-EEEEEEEES---BEEEEEECTTSC
T ss_pred             cCCCC--CC--C-CCCCEEECCCCCEEEecCCcccccccccCCCcEEEEEECCCC-EEEEeeccc---cccceEEcCCCC
Confidence            22110  00  0 1122333  688777542           1235778887543 322211000   01123332 564


Q ss_pred             -EEEEEEEeeCCccEEEEEEEecCCCCeEE---EEeeChhhhhcccCcceEEEEEecCCEEEEEeeeCCCCeEEEEECCC
Q 012227          359 -IMLVGLLTKNAATCVCIWELQKMTLLWKE---VDRMPNIWCLDFYGKHVRMTCLGNKGLLMLSLRSRQMNRLVTYNVMS  434 (468)
Q Consensus       359 -L~lv~~~~~~~~~~i~Vw~ld~~~~~W~~---v~~mp~~~~~~~~~~~~~~~~~~~~~~I~~~~~~~~~~~l~~YD~~t  434 (468)
                       ||++...    ...|.+|.++..++....   +..++...     + ...-.++..+|.||+...  ..+.|.+||+++
T Consensus       162 ~lyv~~~~----~~~i~~~~~d~~~G~~~~~~~~~~~~~~~-----~-~p~g~~~d~~G~lwva~~--~~~~v~~~d~~t  229 (297)
T 3g4e_A          162 IFYYIDSL----SYSVDAFDYDLQTGQISNRRSVYKLEKEE-----Q-IPDGMCIDAEGKLWVACY--NGGRVIRLDPVT  229 (297)
T ss_dssp             EEEEEEGG----GTEEEEEEECTTTCCEEEEEEEEECCGGG-----C-EEEEEEEBTTSCEEEEEE--TTTEEEEECTTT
T ss_pred             EEEEecCC----CCcEEEEeccCCCCcccCcEEEEECCCCC-----C-CCCeeEECCCCCEEEEEc--CCCEEEEEcCCC
Confidence             5554421    234555555434444322   12222110     0 011123445677877543  246799999997


Q ss_pred             CcEE
Q 012227          435 REWL  438 (468)
Q Consensus       435 ~~w~  438 (468)
                      ++..
T Consensus       230 G~~~  233 (297)
T 3g4e_A          230 GKRL  233 (297)
T ss_dssp             CCEE
T ss_pred             ceEE
Confidence            7654

>3vgz_A Uncharacterized protein YNCE; beta-propeller, protein binding; 1.70A {Escherichia coli} PDB: 3vh0_A*

Probab=91.06  E-value=9.5  Score=35.23  Aligned_cols=200  Identities=10%  Similarity=0.025  Sum_probs=96.4

Q ss_pred             eeecCceEEEEEcCCceEEEEcCCCCceE-ecCCCCcCC----cceeEEEEEEcCCCCCCCeEEEEEEe--cCcEEEEeC
Q 012227          210 VASAGGLVCFLDIGHRNFYVCNPLTQSFK-ELPARSVKV----WSRVAVGMTLNGNSTSSGYKILWVGC--DGEYEIYDS  282 (468)
Q Consensus       210 ~~s~~GLl~~~~~~~~~~~V~NP~T~~~~-~LP~~~~~~----~~~~~~~~~~d~~~~~~~ykVv~v~~--~~~v~vy~s  282 (468)
                      +...+..+++.......+.++|+.|++.. .++......    ......++.+++  . + -++++...  +..+.+||.
T Consensus        96 ~s~dg~~l~v~~~~~~~v~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~--d-g-~~l~~~~~~~~~~i~~~d~  171 (353)
T 3vgz_A           96 INNTTQTLWFGNTVNSAVTAIDAKTGEVKGRLVLDDRKRTEEVRPLQPRELVADD--A-T-NTVYISGIGKESVIWVVDG  171 (353)
T ss_dssp             EETTTTEEEEEETTTTEEEEEETTTCCEEEEEESCCCCCCSSCCCCEEEEEEEET--T-T-TEEEEEEESSSCEEEEEET
T ss_pred             ECCCCCEEEEEecCCCEEEEEeCCCCeeEEEEecCCCccccccCCCCCceEEECC--C-C-CEEEEEecCCCceEEEEcC
Confidence            44445567777766678999999998864 333311100    001123344442  1 1 23554442  345899998


Q ss_pred             CCCCccCCCCCCCCcccCcccccccceEEECCE-EEEEEcCCCeEEEEECCCCeEEEeecCCCCC--CCC-ceEEEE-CC
Q 012227          283 LRNSWTRPGSMPSNIKLPVSLNFRSQAVSVDGI-LYFMRSDPEGIVSYNMVTGVWKQFIIPTPLH--LND-HTLAEC-GG  357 (468)
Q Consensus       283 ~t~~W~~~~~~p~~~~~~~~~~~~~~~v~~~G~-lY~~~~~~~~i~~fD~~~~~w~~i~~P~p~~--~~~-~~l~~~-~G  357 (468)
                      .+++=..  .++..-..+     ..-.+.-+|. +|+.. ....|..+|+.+.+.... .+.+..  ... ..++.. +|
T Consensus       172 ~~~~~~~--~~~~~~~~~-----~~~~~s~dg~~l~~~~-~~~~i~~~d~~~~~~~~~-~~~~~~~~~~~~~~~~~s~dg  242 (353)
T 3vgz_A          172 GNIKLKT--AIQNTGKMS-----TGLALDSEGKRLYTTN-ADGELITIDTADNKILSR-KKLLDDGKEHFFINISLDTAR  242 (353)
T ss_dssp             TTTEEEE--EECCCCTTC-----CCCEEETTTTEEEEEC-TTSEEEEEETTTTEEEEE-EECCCSSSCCCEEEEEEETTT
T ss_pred             CCCceEE--EecCCCCcc-----ceEEECCCCCEEEEEc-CCCeEEEEECCCCeEEEE-EEcCCCCCCcccceEEECCCC
Confidence            7654221  111000000     1112222554 55544 456899999998865442 222111  111 123333 45


Q ss_pred             e-EEEEEEEeeCCccEEEEEEEecCCCCeEEEEeeChhhhhcccCcceEEEEEecCCEEEEEeeeCCCCeEEEEECCCCc
Q 012227          358 R-IMLVGLLTKNAATCVCIWELQKMTLLWKEVDRMPNIWCLDFYGKHVRMTCLGNKGLLMLSLRSRQMNRLVTYNVMSRE  436 (468)
Q Consensus       358 ~-L~lv~~~~~~~~~~i~Vw~ld~~~~~W~~v~~mp~~~~~~~~~~~~~~~~~~~~~~I~~~~~~~~~~~l~~YD~~t~~  436 (468)
                      + ||+...    ....+.+|  |..+.+......++..         ..+....+++.+|+..  ...+.+.+||+.+++
T Consensus       243 ~~l~~~~~----~~~~v~~~--d~~~~~~~~~~~~~~~---------~~~~~s~dg~~l~v~~--~~~~~v~~~d~~~~~  305 (353)
T 3vgz_A          243 QRAFITDS----KAAEVLVV--DTRNGNILAKVAAPES---------LAVLFNPARNEAYVTH--RQAGKVSVIDAKSYK  305 (353)
T ss_dssp             TEEEEEES----SSSEEEEE--ETTTCCEEEEEECSSC---------CCEEEETTTTEEEEEE--TTTTEEEEEETTTTE
T ss_pred             CEEEEEeC----CCCEEEEE--ECCCCcEEEEEEcCCC---------ceEEECCCCCEEEEEE--CCCCeEEEEECCCCe
Confidence            5 554431    12444555  6544444333333221         0122233556676643  235789999999887


Q ss_pred             EEE
Q 012227          437 WLK  439 (468)
Q Consensus       437 w~~  439 (468)
                      ...
T Consensus       306 ~~~  308 (353)
T 3vgz_A          306 VVK  308 (353)
T ss_dssp             EEE
T ss_pred             EEE
Confidence            654

>3p5b_L Low density lipoprotein receptor variant; B-propellor, convertase, hydrolase-lipid binding P complex; 3.30A {Homo sapiens} PDB: 3p5c_L

Probab=91.05  E-value=7  Score=37.96  Aligned_cols=148  Identities=14%  Similarity=0.146  Sum_probs=81.0

Q ss_pred             eeecCceEEEEEcCCceEEEEcCCCCceEecCCCCcCCcceeEEEEEEcCCCCCCCeEEEEEEe--cCcEEEEeCCCCCc
Q 012227          210 VASAGGLVCFLDIGHRNFYVCNPLTQSFKELPARSVKVWSRVAVGMTLNGNSTSSGYKILWVGC--DGEYEIYDSLRNSW  287 (468)
Q Consensus       210 ~~s~~GLl~~~~~~~~~~~V~NP~T~~~~~LP~~~~~~~~~~~~~~~~d~~~~~~~ykVv~v~~--~~~v~vy~s~t~~W  287 (468)
                      ++..+|.|++.+....++.++++-.+....+-.....    ...++.+|+  .  ...+++...  ...+++++.....=
T Consensus       166 vD~~~~~lY~~d~~~~~I~~~~~~g~~~~~l~~~~~~----~P~~iavdp--~--~g~ly~td~~~~~~I~~~~~dG~~~  237 (400)
T 3p5b_L          166 VDWIHSNIYWTDSVLGTVSVADTKGVKRKTLFRENGS----KPRAIVVDP--V--HGFMYWTDWGTPAKIKKGGLNGVDI  237 (400)
T ss_dssp             EETTTTEEEEEETTTTEEEEECTTTCSEEEEEECSSC----CEEEEEEET--T--TTEEEEEECSSSCCEEEEETTSCSC
T ss_pred             EEecCCceEEEECCCCeEEEEeCCCCceEEEEeCCCC----CcceEEEec--c--cCeEEEEeCCCCCEEEEEeCCCCcc
Confidence            5555788888887777888998877665544321111    123455562  1  235665542  23477777643211


Q ss_pred             cCCCCCCCCcccCcccccccceEEE---CCEEEEEEcCCCeEEEEECCCCeEEEeecCCCCCC-CCceEEEECCeEEEEE
Q 012227          288 TRPGSMPSNIKLPVSLNFRSQAVSV---DGILYFMRSDPEGIVSYNMVTGVWKQFIIPTPLHL-NDHTLAECGGRIMLVG  363 (468)
Q Consensus       288 ~~~~~~p~~~~~~~~~~~~~~~v~~---~G~lY~~~~~~~~i~~fD~~~~~w~~i~~P~p~~~-~~~~l~~~~G~L~lv~  363 (468)
                      +.+.  .....       ...++.+   ++.|||.......|.++|+....-..+.. .+... .-..++..++.||++.
T Consensus       238 ~~~~--~~~l~-------~P~glavd~~~~~lY~aD~~~~~I~~~d~dG~~~~~~~~-~~~~l~~P~gl~v~~~~lywtd  307 (400)
T 3p5b_L          238 YSLV--TENIQ-------WPNGITLDLLSGRLYWVDSKLHSISSIDVNGGNRKTILE-DEKRLAHPFSLAVFEDKVFWTD  307 (400)
T ss_dssp             EEEE--CSSCS-------CEEEEEEETTTTEEEEEETTTTEEEEEETTSCCCEEEEE-CSSTTSSEEEEEEETTEEEEEE
T ss_pred             EEEE--ECCCC-------ceEEEEEEeCCCEEEEEECCCCEEEEEeCCCCccEEEEe-CCCCCCCCEEEEEeCCEEEEec
Confidence            1110  00111       1224444   58999998877899999997654443311 11111 1235666889999876


Q ss_pred             EEeeCCccEEEEEEEecC
Q 012227          364 LLTKNAATCVCIWELQKM  381 (468)
Q Consensus       364 ~~~~~~~~~i~Vw~ld~~  381 (468)
                      ...      -.|++.+..
T Consensus       308 ~~~------~~V~~~~~~  319 (400)
T 3p5b_L          308 IIN------EAIFSANRL  319 (400)
T ss_dssp             SSS------CSEEEEESS
T ss_pred             CCC------CeEEEEEcC
Confidence            321      146666643

>3v65_B Low-density lipoprotein receptor-related protein; laminin-G, beta-propeller, protein binding; 3.30A {Rattus norvegicus}

Probab=91.04  E-value=10  Score=36.44  Aligned_cols=140  Identities=13%  Similarity=0.107  Sum_probs=74.0

Q ss_pred             CceEEEEEcCCceEEEEcCCCCceEecCCCCcCCcceeEEEEEEcCCCCCCCeEEEEEEec-CcEEEEeCCCCCccCCCC
Q 012227          214 GGLVCFLDIGHRNFYVCNPLTQSFKELPARSVKVWSRVAVGMTLNGNSTSSGYKILWVGCD-GEYEIYDSLRNSWTRPGS  292 (468)
Q Consensus       214 ~GLl~~~~~~~~~~~V~NP~T~~~~~LP~~~~~~~~~~~~~~~~d~~~~~~~ykVv~v~~~-~~v~vy~s~t~~W~~~~~  292 (468)
                      .+.|++...  ..+...++.+++...+-.. .    ....++.+|+    ..-+|++.... ..+..++......+.+..
T Consensus        87 ~~~l~~~~~--~~I~~i~~~~~~~~~~~~~-~----~~~~gl~~d~----~~~~ly~~D~~~~~I~r~~~~g~~~~~~~~  155 (386)
T 3v65_B           87 EPVLLFANR--IDIRQVLPHRSEYTLLLNN-L----ENAIALDFHH----RRELVFWSDVTLDRILRANLNGSNVEEVVS  155 (386)
T ss_dssp             CCEEEEECB--SCEEEECTTSCCCEEEECS-C----SCEEEEEEET----TTTEEEEEETTTTEEEEEETTSCCEEEEEC
T ss_pred             cceeEeecC--ccceeeccCCCcEEEEecC-C----CccEEEEEec----CCCeEEEEeCCCCcEEEEecCCCCcEEEEe
Confidence            455555443  2577788877665544331 1    1235666662    22467766543 347778776654333211


Q ss_pred             CCCCcccCcccccccceEEE---CCEEEEEEcCCCeEEEEECCCCeEEEeecCCCCCCCC-ceEEEE--CCeEEEEEEEe
Q 012227          293 MPSNIKLPVSLNFRSQAVSV---DGILYFMRSDPEGIVSYNMVTGVWKQFIIPTPLHLND-HTLAEC--GGRIMLVGLLT  366 (468)
Q Consensus       293 ~p~~~~~~~~~~~~~~~v~~---~G~lY~~~~~~~~i~~fD~~~~~w~~i~~P~p~~~~~-~~l~~~--~G~L~lv~~~~  366 (468)
                        ....       ...++.+   +|.|||.......|..+|+....-..+ +..  .... ..++.-  +|.||+.... 
T Consensus       156 --~~~~-------~p~glavd~~~g~lY~~d~~~~~I~~~~~dg~~~~~l-~~~--~l~~P~giavdp~~g~ly~td~~-  222 (386)
T 3v65_B          156 --TGLE-------SPGGLAVDWVHDKLYWTDSGTSRIEVANLDGAHRKVL-LWQ--SLEKPRAIALHPMEGTIYWTDWG-  222 (386)
T ss_dssp             --SSCS-------CCCCEEEETTTTEEEEEETTTTEEEECBTTSCSCEEE-ECS--SCSCEEEEEEETTTTEEEEEECS-
T ss_pred             --CCCC-------CccEEEEEeCCCeEEEEcCCCCeEEEEeCCCCceEEe-ecC--CCCCCcEEEEEcCCCeEEEeccC-
Confidence              0100       1123333   689999988777899999876543333 211  1111 234443  6888876421 


Q ss_pred             eCCccEEEEEEEecC
Q 012227          367 KNAATCVCIWELQKM  381 (468)
Q Consensus       367 ~~~~~~i~Vw~ld~~  381 (468)
                        .  .-.|++++..
T Consensus       223 --~--~~~I~r~~~d  233 (386)
T 3v65_B          223 --N--TPRIEASSMD  233 (386)
T ss_dssp             --S--SCEEEEEETT
T ss_pred             --C--CCEEEEEeCC
Confidence              1  1257777754

>3dwl_C Actin-related protein 2/3 complex subunit 1; propellor, actin-binding, ATP-binding, cytoskeleton, nucleot binding, WD repeat; HET: ATP; 3.78A {Schizosaccharomyces pombe}

Probab=91.01  E-value=10  Score=35.54  Aligned_cols=207  Identities=7%  Similarity=-0.084  Sum_probs=83.6

Q ss_pred             ecCceEEEEEcCCceEEEEcCCCCc-eEecCCCCcCCcceeEEEEEEcCCCCCCCeEEEEEEecCcEEEEeCCCCC-ccC
Q 012227          212 SAGGLVCFLDIGHRNFYVCNPLTQS-FKELPARSVKVWSRVAVGMTLNGNSTSSGYKILWVGCDGEYEIYDSLRNS-WTR  289 (468)
Q Consensus       212 s~~GLl~~~~~~~~~~~V~NP~T~~-~~~LP~~~~~~~~~~~~~~~~d~~~~~~~ykVv~v~~~~~v~vy~s~t~~-W~~  289 (468)
                      +.+|-+++.......+.+||..+++ +..+........  ....+.+.+    +.-.++..+.++.+.+||..++. |..
T Consensus        64 s~~~~~l~s~s~d~~v~vwd~~~~~~~~~~~~~~~~~~--~v~~~~~~~----~~~~l~~~~~d~~i~iwd~~~~~~~~~  137 (377)
T 3dwl_C           64 APKSNRIVTCSQDRNAYVYEKRPDGTWKQTLVLLRLNR--AATFVRWSP----NEDKFAVGSGARVISVCYFEQENDWWV  137 (377)
T ss_dssp             CTTTCCEEEEETTSSEEEC------CCCCEEECCCCSS--CEEEEECCT----TSSCCEEEESSSCEEECCC-----CCC
T ss_pred             eCCCCEEEEEeCCCeEEEEEcCCCCceeeeeEecccCC--ceEEEEECC----CCCEEEEEecCCeEEEEEECCccccee
Confidence            3345444444445679999998877 222111111111  122333331    12234444456679999987654 543


Q ss_pred             CCCCCCCcccCcccccccceEEE--CCEEEEEEcCCCeEEEEECCCCeEE---------------EeecCCCCCCCCceE
Q 012227          290 PGSMPSNIKLPVSLNFRSQAVSV--DGILYFMRSDPEGIVSYNMVTGVWK---------------QFIIPTPLHLNDHTL  352 (468)
Q Consensus       290 ~~~~p~~~~~~~~~~~~~~~v~~--~G~lY~~~~~~~~i~~fD~~~~~w~---------------~i~~P~p~~~~~~~l  352 (468)
                      ...+.....      ..-..+.+  +|.+.+.+.....|..||+.+....               ...... .+.....-
T Consensus       138 ~~~~~~~h~------~~v~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~v~~  210 (377)
T 3dwl_C          138 SKHLKRPLR------STILSLDWHPNNVLLAAGCADRKAYVLSAYVRDVDAKPEASVWGSRLPFNTVCAEY-PSGGWVHA  210 (377)
T ss_dssp             CEEECSSCC------SCEEEEEECTTSSEEEEEESSSCEEEEEECCSSCC-CCCSCSSCSCCCEEEEEECC-CCSSSEEE
T ss_pred             eeEeecccC------CCeEEEEEcCCCCEEEEEeCCCEEEEEEEEecccCCCccccccccccchhhhhhcc-cCCceEEE
Confidence            322221000      01112222  4555555555567888998643211               111111 11111222


Q ss_pred             EEE--CCeEEEEEEEeeCCccEEEEEEEecCCCCeEEEEeeChhhhhcccCcceEEEEEecCCEEEEEeeeCCCCeEEEE
Q 012227          353 AEC--GGRIMLVGLLTKNAATCVCIWELQKMTLLWKEVDRMPNIWCLDFYGKHVRMTCLGNKGLLMLSLRSRQMNRLVTY  430 (468)
Q Consensus       353 ~~~--~G~L~lv~~~~~~~~~~i~Vw~ld~~~~~W~~v~~mp~~~~~~~~~~~~~~~~~~~~~~I~~~~~~~~~~~l~~Y  430 (468)
                      +.+  +|++++.+. .   ...+.||.+.........+..+...     .. .+.-.++..++.+++.. +  .+.++.|
T Consensus       211 ~~~sp~~~~l~~~~-~---d~~i~iwd~~~~~~~~~~~~~~~~~-----~~-~v~~~~~s~~~~~l~~~-~--~~~~~~~  277 (377)
T 3dwl_C          211 VGFSPSGNALAYAG-H---DSSVTIAYPSAPEQPPRALITVKLS-----QL-PLRSLLWANESAIVAAG-Y--NYSPILL  277 (377)
T ss_dssp             EEECTTSSCEEEEE-T---TTEEC-CEECSTTSCEEECCCEECS-----SS-CEEEEEEEETTEEEEEE-S--SSSEEEE
T ss_pred             EEECCCCCEEEEEe-C---CCcEEEEECCCCCCcceeeEeecCC-----CC-ceEEEEEcCCCCEEEEE-c--CCcEEEE
Confidence            222  566555443 1   2578999887654332222222110     00 01112233355554432 2  3456688


Q ss_pred             ECCCCcEEEccCCc
Q 012227          431 NVMSREWLKVPGCV  444 (468)
Q Consensus       431 D~~t~~w~~v~~~~  444 (468)
                      +.....|+.+..+.
T Consensus       278 ~~~~~~~~~~~~~~  291 (377)
T 3dwl_C          278 QGNESGWAHTRDLD  291 (377)
T ss_dssp             CCCC---CCSBCCC
T ss_pred             EeCCCceEEEeeec
Confidence            88877776655443

>3dwl_C Actin-related protein 2/3 complex subunit 1; propellor, actin-binding, ATP-binding, cytoskeleton, nucleot binding, WD repeat; HET: ATP; 3.78A {Schizosaccharomyces pombe}

Probab=90.96  E-value=1.4  Score=41.82  Aligned_cols=137  Identities=9%  Similarity=0.021  Sum_probs=60.6

Q ss_pred             CCceEEEEcCCCCceEecCCCCcCCcceeEEEEEEcCCCCCCCeEEEEEEecCcEEEEeCCCCC-ccCCCCCCCCcccCc
Q 012227          223 GHRNFYVCNPLTQSFKELPARSVKVWSRVAVGMTLNGNSTSSGYKILWVGCDGEYEIYDSLRNS-WTRPGSMPSNIKLPV  301 (468)
Q Consensus       223 ~~~~~~V~NP~T~~~~~LP~~~~~~~~~~~~~~~~d~~~~~~~ykVv~v~~~~~v~vy~s~t~~-W~~~~~~p~~~~~~~  301 (468)
                      ....+.+||..++.+..+-....+....  ..+.+.+  .  .-.++..+.++.+.+||..++. |.....+.....   
T Consensus        31 ~d~~i~iw~~~~~~~~~~~~~~~h~~~v--~~~~~s~--~--~~~l~s~s~d~~v~vwd~~~~~~~~~~~~~~~~~~---  101 (377)
T 3dwl_C           31 ATNQVELYEQDGNGWKHARTFSDHDKIV--TCVDWAP--K--SNRIVTCSQDRNAYVYEKRPDGTWKQTLVLLRLNR---  101 (377)
T ss_dssp             SSSCBCEEEEETTEEEECCCBCCCSSCE--EEEEECT--T--TCCEEEEETTSSEEEC------CCCCEEECCCCSS---
T ss_pred             CCCEEEEEEccCCceEEEEEEecCCceE--EEEEEeC--C--CCEEEEEeCCCeEEEEEcCCCCceeeeeEecccCC---
Confidence            3456888888888766555443222222  2333332  1  1234444446679999998876 544322111100   


Q ss_pred             ccccccceEEE--CCEEEEEEcCCCeEEEEECCCCe----EEEeecCCCCCCCCceEEEE--CCeEEEEEEEeeCCccEE
Q 012227          302 SLNFRSQAVSV--DGILYFMRSDPEGIVSYNMVTGV----WKQFIIPTPLHLNDHTLAEC--GGRIMLVGLLTKNAATCV  373 (468)
Q Consensus       302 ~~~~~~~~v~~--~G~lY~~~~~~~~i~~fD~~~~~----w~~i~~P~p~~~~~~~l~~~--~G~L~lv~~~~~~~~~~i  373 (468)
                          .-..+.+  +|...+.+.....|..+|+.+++    ...+  ..+ +.....-+.+  +|++.+++..    ...+
T Consensus       102 ----~v~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~--~~~-h~~~v~~~~~~~~~~~l~~~~~----d~~i  170 (377)
T 3dwl_C          102 ----AATFVRWSPNEDKFAVGSGARVISVCYFEQENDWWVSKHL--KRP-LRSTILSLDWHPNNVLLAAGCA----DRKA  170 (377)
T ss_dssp             ----CEEEEECCTTSSCCEEEESSSCEEECCC-----CCCCEEE--CSS-CCSCEEEEEECTTSSEEEEEES----SSCE
T ss_pred             ----ceEEEEECCCCCEEEEEecCCeEEEEEECCcccceeeeEe--ecc-cCCCeEEEEEcCCCCEEEEEeC----CCEE
Confidence                0111222  45554555555678888888764    2222  111 1111222222  5666555432    2468


Q ss_pred             EEEEEe
Q 012227          374 CIWELQ  379 (468)
Q Consensus       374 ~Vw~ld  379 (468)
                      .+|.++
T Consensus       171 ~iwd~~  176 (377)
T 3dwl_C          171 YVLSAY  176 (377)
T ss_dssp             EEEEEC
T ss_pred             EEEEEE
Confidence            999875

>2pm7_B Protein transport protein SEC13, protein transport protein SEC31; beta propeller, alpha solenoid; 2.35A {Saccharomyces cerevisiae} PDB: 2pm9_B 2pm6_B 3iko_A 3mzk_A 3mzl_A

Probab=90.90  E-value=9.2  Score=34.83  Aligned_cols=211  Identities=9%  Similarity=0.041  Sum_probs=91.6

Q ss_pred             ceEEEEEcCCceEEEEcCCCCceEecCCCCcCCcceeEEEEEEcCCCCCCCeEEEEEEecCcEEEEeCCCCC-ccCCCCC
Q 012227          215 GLVCFLDIGHRNFYVCNPLTQSFKELPARSVKVWSRVAVGMTLNGNSTSSGYKILWVGCDGEYEIYDSLRNS-WTRPGSM  293 (468)
Q Consensus       215 GLl~~~~~~~~~~~V~NP~T~~~~~LP~~~~~~~~~~~~~~~~d~~~~~~~ykVv~v~~~~~v~vy~s~t~~-W~~~~~~  293 (468)
                      |-+++.......+.+||..++++..+.....+....  ..+.+.  +......++..+.++.+.+||..++. +... .+
T Consensus        67 g~~l~s~s~D~~v~iWd~~~~~~~~~~~~~~h~~~v--~~v~~~--p~~~g~~l~s~s~d~~v~~wd~~~~~~~~~~-~~  141 (297)
T 2pm7_B           67 GTILASCSYDGKVMIWKEENGRWSQIAVHAVHSASV--NSVQWA--PHEYGPMLLVASSDGKVSVVEFKENGTTSPI-II  141 (297)
T ss_dssp             CSEEEEEETTTEEEEEEBSSSCBCCCEEECCCSSCE--EEEEEC--CGGGCSEEEEEETTSEEEEEEBCSSSCBCCE-EE
T ss_pred             CCEEEEEcCCCEEEEEEcCCCceEEEEEeecCCCce--eEEEeC--cCCCCcEEEEEECCCcEEEEEecCCCceeee-ee
Confidence            655666555678999999888665433221111122  223333  11111234444456679999987652 3211 00


Q ss_pred             CCCcccCcccccccceE--------EECCEEEEEEcCCCeEEEEECCCC--eEEEeecCCCCCCCCceEEEE--C---Ce
Q 012227          294 PSNIKLPVSLNFRSQAV--------SVDGILYFMRSDPEGIVSYNMVTG--VWKQFIIPTPLHLNDHTLAEC--G---GR  358 (468)
Q Consensus       294 p~~~~~~~~~~~~~~~v--------~~~G~lY~~~~~~~~i~~fD~~~~--~w~~i~~P~p~~~~~~~l~~~--~---G~  358 (468)
                      ......-....+.....        ..++.+.+.++....|..+|+.+.  .+.... ....+.....-+..  +   +.
T Consensus       142 ~~h~~~v~~~~~~p~~~~~~~~~~~~~~~~~l~sgs~D~~v~lwd~~~~~~~~~~~~-~l~~H~~~V~~v~~sp~~~~~~  220 (297)
T 2pm7_B          142 DAHAIGVNSASWAPATIEEDGEHNGTKESRKFVTGGADNLVKIWKYNSDAQTYVLES-TLEGHSDWVRDVAWSPTVLLRS  220 (297)
T ss_dssp             ECCSSCEEEEEECCCC------------CCEEEEEETTSCEEEEEEETTTTEEEEEE-EECCCSSCEEEEEECCCCSSSE
T ss_pred             ecccCccceEeecCCcccccccCCCCCCcceEEEEcCCCcEEEEEEcCCCceEEEEE-EecCCCCceEEEEECCCCCCce
Confidence            00000000000000000        012345555555567888887654  343321 11122222222333  2   34


Q ss_pred             EEEEEEEeeCCccEEEEEEEecCCCCeEEEEeeChhhhhcccCcceEEEEEecCCEEEEEeeeCCCCeEEEEECC-CCcE
Q 012227          359 IMLVGLLTKNAATCVCIWELQKMTLLWKEVDRMPNIWCLDFYGKHVRMTCLGNKGLLMLSLRSRQMNRLVTYNVM-SREW  437 (468)
Q Consensus       359 L~lv~~~~~~~~~~i~Vw~ld~~~~~W~~v~~mp~~~~~~~~~~~~~~~~~~~~~~I~~~~~~~~~~~l~~YD~~-t~~w  437 (468)
                      +++.+ ..   ..++.||.++.....|.......    ..+.+. +.-..+..++.+++.. + ..+.+..|+.. .++|
T Consensus       221 ~las~-s~---D~~v~iWd~~~~~~~~~~~~~~~----~~~~~~-v~~~~~s~~g~~las~-~-~D~~v~lw~~~~~g~w  289 (297)
T 2pm7_B          221 YMASV-SQ---DRTCIIWTQDNEQGPWKKTLLKE----EKFPDV-LWRASWSLSGNVLALS-G-GDNKVTLWKENLEGKW  289 (297)
T ss_dssp             EEEEE-ET---TSCEEEEEESSTTSCCEEEESSS----SCCSSC-EEEEEECSSSCCEEEE-E-TTSCEEEEEECTTSCE
T ss_pred             EEEEE-EC---CCcEEEEEeCCCCCccceeeeec----ccCCCc-EEEEEECCCCCEEEEE-c-CCCcEEEEEECCCCcE
Confidence            44433 22   25789998876555675431100    011111 1111222233333322 2 24567788865 5678


Q ss_pred             EEccC
Q 012227          438 LKVPG  442 (468)
Q Consensus       438 ~~v~~  442 (468)
                      +.+..
T Consensus       290 ~~~~~  294 (297)
T 2pm7_B          290 EPAGE  294 (297)
T ss_dssp             EEC--
T ss_pred             Eeccc
Confidence            87653

>1gxr_A ESG1, transducin-like enhancer protein 1; transcriptional CO-repressor, WD40, transcription repressor, WD repeat; 1.65A {Homo sapiens} SCOP: b.69.4.1 PDB: 2ce8_A 2ce9_A

Probab=90.88  E-value=9.3  Score=34.83  Aligned_cols=196  Identities=11%  Similarity=0.092  Sum_probs=89.5

Q ss_pred             cCceEEEEEcCCceEEEEcCCCCceEe-cCCCCcCCcceeEEEEEEcCCCCCCCeEEEEEEecCcEEEEeCCCCCccCCC
Q 012227          213 AGGLVCFLDIGHRNFYVCNPLTQSFKE-LPARSVKVWSRVAVGMTLNGNSTSSGYKILWVGCDGEYEIYDSLRNSWTRPG  291 (468)
Q Consensus       213 ~~GLl~~~~~~~~~~~V~NP~T~~~~~-LP~~~~~~~~~~~~~~~~d~~~~~~~ykVv~v~~~~~v~vy~s~t~~W~~~~  291 (468)
                      .+|-+++... ...+.+||..+++... +..............+.+.+    +.-.++..+.++.+.+|+..++......
T Consensus        61 ~~~~~l~~~~-dg~i~iw~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~----~~~~l~~~~~d~~i~~~d~~~~~~~~~~  135 (337)
T 1gxr_A           61 NPTRHVYTGG-KGCVKVWDISHPGNKSPVSQLDCLNRDNYIRSCKLLP----DGCTLIVGGEASTLSIWDLAAPTPRIKA  135 (337)
T ss_dssp             SSSSEEEEEC-BSEEEEEETTSTTCCSCSEEEECSCTTSBEEEEEECT----TSSEEEEEESSSEEEEEECCCC--EEEE
T ss_pred             cCCcEEEEcC-CCeEEEEECCCCCceeeeecccccCCCCcEEEEEEcC----CCCEEEEEcCCCcEEEEECCCCCcceee
Confidence            3444444444 5678899987765321 11100000111223333431    1223444444667999999887643221


Q ss_pred             CCCCCcccCcccccccceEEE--CCEEEEEEcCCCeEEEEECCCCeEEEeecCCCCCCCCceEEEE--CCeEEEEEEEee
Q 012227          292 SMPSNIKLPVSLNFRSQAVSV--DGILYFMRSDPEGIVSYNMVTGVWKQFIIPTPLHLNDHTLAEC--GGRIMLVGLLTK  367 (468)
Q Consensus       292 ~~p~~~~~~~~~~~~~~~v~~--~G~lY~~~~~~~~i~~fD~~~~~w~~i~~P~p~~~~~~~l~~~--~G~L~lv~~~~~  367 (468)
                      ......       .....+.+  +|...+.+.....|..||+.+.+.... +..  +.....-+..  +|++++++..  
T Consensus       136 ~~~~~~-------~~i~~~~~~~~~~~l~~~~~dg~v~~~d~~~~~~~~~-~~~--~~~~i~~~~~~~~~~~l~~~~~--  203 (337)
T 1gxr_A          136 ELTSSA-------PACYALAISPDSKVCFSCCSDGNIAVWDLHNQTLVRQ-FQG--HTDGASCIDISNDGTKLWTGGL--  203 (337)
T ss_dssp             EEECSS-------SCEEEEEECTTSSEEEEEETTSCEEEEETTTTEEEEE-ECC--CSSCEEEEEECTTSSEEEEEET--
T ss_pred             ecccCC-------CceEEEEECCCCCEEEEEeCCCcEEEEeCCCCceeee-eec--ccCceEEEEECCCCCEEEEEec--
Confidence            111100       00112222  565555555556799999988765443 221  1111222222  6666655432  


Q ss_pred             CCccEEEEEEEecCCCCeEEEEeeChhhhhcccCcceEEEEEe-cCCEEEEEeeeCCCCeEEEEECCCCcEEEcc
Q 012227          368 NAATCVCIWELQKMTLLWKEVDRMPNIWCLDFYGKHVRMTCLG-NKGLLMLSLRSRQMNRLVTYNVMSREWLKVP  441 (468)
Q Consensus       368 ~~~~~i~Vw~ld~~~~~W~~v~~mp~~~~~~~~~~~~~~~~~~-~~~~I~~~~~~~~~~~l~~YD~~t~~w~~v~  441 (468)
                        ...+.+|.+...    +.+..+..      .+ ...-.++. .+..+++.   ...+.+..||+.+++...+.
T Consensus       204 --dg~i~~~d~~~~----~~~~~~~~------~~-~v~~~~~s~~~~~l~~~---~~~~~i~~~~~~~~~~~~~~  262 (337)
T 1gxr_A          204 --DNTVRSWDLREG----RQLQQHDF------TS-QIFSLGYCPTGEWLAVG---MESSNVEVLHVNKPDKYQLH  262 (337)
T ss_dssp             --TSEEEEEETTTT----EEEEEEEC------SS-CEEEEEECTTSSEEEEE---ETTSCEEEEETTSSCEEEEC
T ss_pred             --CCcEEEEECCCC----ceEeeecC------CC-ceEEEEECCCCCEEEEE---cCCCcEEEEECCCCCeEEEc
Confidence              246788855432    22222211      00 01112222 34444332   23467888998887765554

>2vdu_B TRNA (guanine-N(7)-)-methyltransferase- associated WD repeat protein TRM82; S-adenosyl-L-methionine, tRNA processing, phosphorylation, M7G, spout MT, WD repeat; 2.40A {Saccharomyces cerevisiae}

Probab=90.84  E-value=13  Score=36.27  Aligned_cols=204  Identities=10%  Similarity=0.101  Sum_probs=96.5

Q ss_pred             CceEEEEEcCCceEEEEcCCCCceEecC--CCCcCCcceeEEEEEEcCCCCCCCeEEEEEE-ecCcEEEEeCCCCCccCC
Q 012227          214 GGLVCFLDIGHRNFYVCNPLTQSFKELP--ARSVKVWSRVAVGMTLNGNSTSSGYKILWVG-CDGEYEIYDSLRNSWTRP  290 (468)
Q Consensus       214 ~GLl~~~~~~~~~~~V~NP~T~~~~~LP--~~~~~~~~~~~~~~~~d~~~~~~~ykVv~v~-~~~~v~vy~s~t~~W~~~  290 (468)
                      +|-.++.......+++++..+++....+  ...........+.+..+  .  ...+.++.+ .++.+.+||..++.-...
T Consensus       160 ~~~~l~~~~~~g~v~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~sp~--~--~~~~~l~s~~~d~~i~vwd~~~~~~~~~  235 (450)
T 2vdu_B          160 DDTTVIIADKFGDVYSIDINSIPEEKFTQEPILGHVSMLTDVHLIKD--S--DGHQFIITSDRDEHIKISHYPQCFIVDK  235 (450)
T ss_dssp             TSSEEEEEETTSEEEEEETTSCCCSSCCCCCSEECSSCEEEEEEEEC--T--TSCEEEEEEETTSCEEEEEESCTTCEEE
T ss_pred             CCCEEEEEeCCCcEEEEecCCcccccccceeeecccCceEEEEEcCC--C--CCCcEEEEEcCCCcEEEEECCCCceeee
Confidence            4543444334457888887766543201  11111112222333222  0  113344444 455799999876543211


Q ss_pred             CCCCCCcccCcccccccceEEE-CCEEEEEEcCCCeEEEEECCCCeEEE-eecCC----------------------CCC
Q 012227          291 GSMPSNIKLPVSLNFRSQAVSV-DGILYFMRSDPEGIVSYNMVTGVWKQ-FIIPT----------------------PLH  346 (468)
Q Consensus       291 ~~~p~~~~~~~~~~~~~~~v~~-~G~lY~~~~~~~~i~~fD~~~~~w~~-i~~P~----------------------p~~  346 (468)
                      - +... .      ..-..+.+ +|.+.+.+.....|..+|+.+.+... +....                      ...
T Consensus       236 ~-~~~h-~------~~v~~~~~sd~~~l~s~~~d~~v~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  307 (450)
T 2vdu_B          236 W-LFGH-K------HFVSSICCGKDYLLLSAGGDDKIFAWDWKTGKNLSTFDYNSLIKPYLNDQHLAPPRFQNENNDIIE  307 (450)
T ss_dssp             E-CCCC-S------SCEEEEEECSTTEEEEEESSSEEEEEETTTCCEEEEEECHHHHGGGCCTTSBC----------CBC
T ss_pred             e-ecCC-C------CceEEEEECCCCEEEEEeCCCeEEEEECCCCcEeeeecchhhhhhhhhhcccccccccccccccce
Confidence            0 0000 0      00112222 67666666666789999998876433 22110                      000


Q ss_pred             CCCceEEEE-CCeEEEEEEEeeCCccEEEEEEE-ecCCCCeEEEEeeChhhhhcccCcceEEEEEecCCEEEEEeeeCCC
Q 012227          347 LNDHTLAEC-GGRIMLVGLLTKNAATCVCIWEL-QKMTLLWKEVDRMPNIWCLDFYGKHVRMTCLGNKGLLMLSLRSRQM  424 (468)
Q Consensus       347 ~~~~~l~~~-~G~L~lv~~~~~~~~~~i~Vw~l-d~~~~~W~~v~~mp~~~~~~~~~~~~~~~~~~~~~~I~~~~~~~~~  424 (468)
                      .....+... +|++.+++.   .....+.||.+ +.....+..+..+...  .    .  ...+....+.+++.......
T Consensus       308 ~~v~~i~~~~~~~~l~~~~---~~d~~i~iw~~~~~~~~~l~~~~~~~~~--~----~--v~~~~~~~~~~~v~~~~~~~  376 (450)
T 2vdu_B          308 FAVSKIIKSKNLPFVAFFV---EATKCIIILEMSEKQKGDLALKQIITFP--Y----N--VISLSAHNDEFQVTLDNKES  376 (450)
T ss_dssp             CCEEEEEECSSSSEEEEEE---TTCSEEEEEEECSSSTTCEEEEEEEECS--S----C--EEEEEEETTEEEEEECCTTC
T ss_pred             EEEEEEEEeCCCCEEEEEE---CCCCeEEEEEeccCCCCceeeccEeccC--C----c--eEEEEecCCcEEEEEecccC
Confidence            000122222 466555543   12368999998 3344667776666422  1    0  11112223556555443221


Q ss_pred             -------CeEEEEECCCCcEEEc
Q 012227          425 -------NRLVTYNVMSREWLKV  440 (468)
Q Consensus       425 -------~~l~~YD~~t~~w~~v  440 (468)
                             -.++.+|.++++|+..
T Consensus       377 ~~~~~~~i~v~~~~~~~~~~~~~  399 (450)
T 2vdu_B          377 SGVQKNFAKFIEYNLNENSFVVN  399 (450)
T ss_dssp             CSSCCCSEEEEEEETTTTEEEEC
T ss_pred             CCCCCcceEEEEEEcCCCeEEEc
Confidence                   1678888888888643

>3lrv_A PRE-mRNA-splicing factor 19; PRP19, WD40, E3 ubiquitin ligase, spliceosome, DNA damage, D repair, mRNA processing, nucleus; 2.60A {Saccharomyces cerevisiae}

Probab=90.63  E-value=11  Score=35.14  Aligned_cols=155  Identities=12%  Similarity=0.096  Sum_probs=75.4

Q ss_pred             CceEEEEEcCCceEEEEcCCCCceEecCCCCcCCcceeEEEEEEcCCCCCCCeEEEEEEe-cCcEEEEeCCCCCccCCCC
Q 012227          214 GGLVCFLDIGHRNFYVCNPLTQSFKELPARSVKVWSRVAVGMTLNGNSTSSGYKILWVGC-DGEYEIYDSLRNSWTRPGS  292 (468)
Q Consensus       214 ~GLl~~~~~~~~~~~V~NP~T~~~~~LP~~~~~~~~~~~~~~~~d~~~~~~~ykVv~v~~-~~~v~vy~s~t~~W~~~~~  292 (468)
                      +|-+++.....+.+.+||..+++...+-..... .....+.  +.+     +.++++.++ ++.+.+||..++.-.. ..
T Consensus       138 ~~~~l~s~s~dg~i~~wd~~~~~~~~~~~~~~~-~~i~~~~--~~p-----dg~~lasg~~dg~i~iwd~~~~~~~~-~~  208 (343)
T 3lrv_A          138 NTEYFIWADNRGTIGFQSYEDDSQYIVHSAKSD-VEYSSGV--LHK-----DSLLLALYSPDGILDVYNLSSPDQAS-SR  208 (343)
T ss_dssp             -CCEEEEEETTCCEEEEESSSSCEEEEECCCSS-CCCCEEE--ECT-----TSCEEEEECTTSCEEEEESSCTTSCC-EE
T ss_pred             CCCEEEEEeCCCcEEEEECCCCcEEEEEecCCC-CceEEEE--ECC-----CCCEEEEEcCCCEEEEEECCCCCCCc-cE
Confidence            344444444455788999888877543321111 1122233  331     134555544 5669999998765320 01


Q ss_pred             CCCCcccCcccccccceEEE--CCEEEEEEcCCCeEEEEECCCCeEEEeecCCCCCCC---CceEEEE-CCeEEEEEEEe
Q 012227          293 MPSNIKLPVSLNFRSQAVSV--DGILYFMRSDPEGIVSYNMVTGVWKQFIIPTPLHLN---DHTLAEC-GGRIMLVGLLT  366 (468)
Q Consensus       293 ~p~~~~~~~~~~~~~~~v~~--~G~lY~~~~~~~~i~~fD~~~~~w~~i~~P~p~~~~---~~~l~~~-~G~L~lv~~~~  366 (468)
                      +.....      ..-..+.+  +|...+.+.+ +.|..+|+.+..-.....+...+..   ...+.-. +|++.+++.. 
T Consensus       209 ~~~~h~------~~v~~l~fs~~g~~l~s~~~-~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~l~~~s~-  280 (343)
T 3lrv_A          209 FPVDEE------AKIKEVKFADNGYWMVVECD-QTVVCFDLRKDVGTLAYPTYTIPEFKTGTVTYDIDDSGKNMIAYSN-  280 (343)
T ss_dssp             CCCCTT------SCEEEEEECTTSSEEEEEES-SBEEEEETTSSTTCBSSCCCBC-----CCEEEEECTTSSEEEEEET-
T ss_pred             EeccCC------CCEEEEEEeCCCCEEEEEeC-CeEEEEEcCCCCcceeecccccccccccceEEEECCCCCEEEEecC-
Confidence            111000      01112223  5555555544 4899999987542110001000000   0112222 5776665431 


Q ss_pred             eCCccEEEEEEEecCCCCeEE
Q 012227          367 KNAATCVCIWELQKMTLLWKE  387 (468)
Q Consensus       367 ~~~~~~i~Vw~ld~~~~~W~~  387 (468)
                        ....+.||.++.....|+.
T Consensus       281 --~d~~i~v~~~~~~~~~~~~  299 (343)
T 3lrv_A          281 --ESNSLTIYKFDKKTKNWTK  299 (343)
T ss_dssp             --TTTEEEEEEECTTTCSEEE
T ss_pred             --CCCcEEEEEEcccccceEe
Confidence              1357899999887888987

>3hfq_A Uncharacterized protein LP_2219; Q88V64_lacpl, NESG, LPR118, structural genomics, PSI-2, protein structure initiative; 1.96A {Lactobacillus plantarum}

Probab=90.59  E-value=11  Score=35.05  Aligned_cols=205  Identities=11%  Similarity=0.097  Sum_probs=95.4

Q ss_pred             CceEEEEEcCCceEEEEcCC-CCceEecCCCCc---C----CcceeEEEEEEcCCCCCCCeEEEEEEe-cCcEEEEeCC-
Q 012227          214 GGLVCFLDIGHRNFYVCNPL-TQSFKELPARSV---K----VWSRVAVGMTLNGNSTSSGYKILWVGC-DGEYEIYDSL-  283 (468)
Q Consensus       214 ~GLl~~~~~~~~~~~V~NP~-T~~~~~LP~~~~---~----~~~~~~~~~~~d~~~~~~~ykVv~v~~-~~~v~vy~s~-  283 (468)
                      +..|++.......+.+|+.. +++...+.....   .    ........+.++  +.   .++++... .+.+.+|+.. 
T Consensus        97 g~~l~~~~~~~~~v~v~~~~~~g~~~~~~~~~~~~~~p~~~~~~~~~~~~~~s--pd---g~l~v~~~~~~~v~~~~~~~  171 (347)
T 3hfq_A           97 RQLVYSANYHKGTAEVMKIAADGALTLTDTVQHSGHGPRPEQDGSHIHYTDLT--PD---NRLAVIDLGSDKVYVYNVSD  171 (347)
T ss_dssp             TTEEEEEETTTTEEEEEEECTTSCEEEEEEEECCCCCSSTTCSSCCEEEEEEC--TT---SCEEEEETTTTEEEEEEECT
T ss_pred             CCEEEEEeCCCCEEEEEEeCCCCCeeecceeecCCCCCCccccCCCceEEEEC--CC---CcEEEEeCCCCEEEEEEECC
Confidence            33566655455678888873 344332221100   0    000112234444  22   23554443 3458999987 


Q ss_pred             CCCccCCCCCCCCcccCcccccccceEEE--CCE-EEEEEcCCCeEEEEECC--CCeEEEeec-C-CCCCC---CCc-eE
Q 012227          284 RNSWTRPGSMPSNIKLPVSLNFRSQAVSV--DGI-LYFMRSDPEGIVSYNMV--TGVWKQFII-P-TPLHL---NDH-TL  352 (468)
Q Consensus       284 t~~W~~~~~~p~~~~~~~~~~~~~~~v~~--~G~-lY~~~~~~~~i~~fD~~--~~~w~~i~~-P-~p~~~---~~~-~l  352 (468)
                      ++.............      .....+.+  +|+ +|+.......+..||+.  ++++..+.. . .+...   ... .+
T Consensus       172 ~g~~~~~~~~~~~~g------~~p~~~~~spdg~~l~v~~~~~~~v~v~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~i  245 (347)
T 3hfq_A          172 AGQLSEQSVLTMEAG------FGPRHLVFSPDGQYAFLAGELSSQIASLKYDTQTGAFTQLGIVKTIPADYTAHNGAAAI  245 (347)
T ss_dssp             TSCEEEEEEEECCTT------CCEEEEEECTTSSEEEEEETTTTEEEEEEEETTTTEEEEEEEEESSCTTCCSCCEEEEE
T ss_pred             CCcEEEeeeEEcCCC------CCCceEEECCCCCEEEEEeCCCCEEEEEEecCCCCceEEeeeeeecCCCCCCCCcceeE
Confidence            554432211000000      00112223  565 77766655677777765  466654321 1 11110   111 22


Q ss_pred             EEE-CCeEEEEEEEeeCCccEEEEEEEecCCCCeEEEEeeChhhhhcccCcceEEEEEe-cCCEEEEEeeeCCCCeEEEE
Q 012227          353 AEC-GGRIMLVGLLTKNAATCVCIWELQKMTLLWKEVDRMPNIWCLDFYGKHVRMTCLG-NKGLLMLSLRSRQMNRLVTY  430 (468)
Q Consensus       353 ~~~-~G~L~lv~~~~~~~~~~i~Vw~ld~~~~~W~~v~~mp~~~~~~~~~~~~~~~~~~-~~~~I~~~~~~~~~~~l~~Y  430 (468)
                      +.. +|+..++....   ...+.||.++.. +.++.+..++..-      ....-.++. ++..||+..  ...+.+.+|
T Consensus       246 ~~spdG~~l~v~~~~---~~~v~v~~~~~~-g~~~~~~~~~~~~------~~~~~~~~spdg~~l~v~~--~~~~~v~v~  313 (347)
T 3hfq_A          246 RLSHDGHFLYVSNRG---YNTLAVFAVTAD-GHLTLIQQISTEG------DFPRDFDLDPTEAFVVVVN--QNTDNATLY  313 (347)
T ss_dssp             EECTTSCEEEEEEET---TTEEEEEEECGG-GCEEEEEEEECSS------SCCCEEEECTTSSEEEEEE--TTTTEEEEE
T ss_pred             EECCCCCEEEEEeCC---CCEEEEEEECCC-CcEEEeEEEecCC------CCcCeEEECCCCCEEEEEE--cCCCcEEEE
Confidence            222 67643333322   357899988753 4666666554310      001122333 455676543  233567677


Q ss_pred             --ECCCCcEEEcc
Q 012227          431 --NVMSREWLKVP  441 (468)
Q Consensus       431 --D~~t~~w~~v~  441 (468)
                        |.++++.+.+.
T Consensus       314 ~~d~~tg~l~~~~  326 (347)
T 3hfq_A          314 ARDLTSGKLSLLQ  326 (347)
T ss_dssp             EECTTTCCEEEEE
T ss_pred             EEeCCCCeEEecc
Confidence              88888888764

>3sov_A LRP-6, low-density lipoprotein receptor-related protein; beta propeller, protein binding-antagonist complex; HET: NAG FUC; 1.27A {Homo sapiens} PDB: 3soq_A* 3sob_B

Probab=90.51  E-value=11  Score=35.16  Aligned_cols=188  Identities=11%  Similarity=0.082  Sum_probs=94.4

Q ss_pred             ecCceEEEEEcCCceEEEEcCCCCce--EecCCCCcCCcceeEEEEEEcCCCCCCCeEEEEEEec-CcEEEEeCCCCCcc
Q 012227          212 SAGGLVCFLDIGHRNFYVCNPLTQSF--KELPARSVKVWSRVAVGMTLNGNSTSSGYKILWVGCD-GEYEIYDSLRNSWT  288 (468)
Q Consensus       212 s~~GLl~~~~~~~~~~~V~NP~T~~~--~~LP~~~~~~~~~~~~~~~~d~~~~~~~ykVv~v~~~-~~v~vy~s~t~~W~  288 (468)
                      ..+|.|+..+....+++.+++.++..  ..+.. ...    ...++.+|  .  ..-+||+.... ..+++++.....=+
T Consensus        44 ~~~~~lyw~D~~~~~I~r~~~~g~~~~~~~~~~-~l~----~p~glavd--~--~~g~ly~~d~~~~~I~~~~~dG~~~~  114 (318)
T 3sov_A           44 FSHGLIYWSDVSEEAIKRTEFNKTESVQNVVVS-GLL----SPDGLACD--W--LGEKLYWTDSETNRIEVSNLDGSLRK  114 (318)
T ss_dssp             GGGTEEEEEETTTTEEEEEETTSSSCCCEEEEE-CCS----CCCEEEEE--T--TTTEEEEEETTTTEEEEEETTSCSCE
T ss_pred             eCCCEEEEEECCCCcEEEEEccCCCceEEEEcC-CCC----CccEEEEE--c--CCCeEEEEECCCCEEEEEECCCCcEE
Confidence            34678888887777888888876531  11111 011    11234444  1  12456665432 35888887543211


Q ss_pred             CCCCCCCCcccCcccccccceEEE---CCEEEEEEcC-CCeEEEEECCCCeEEEeecCCCCCCCCceEEEE--CCeEEEE
Q 012227          289 RPGSMPSNIKLPVSLNFRSQAVSV---DGILYFMRSD-PEGIVSYNMVTGVWKQFIIPTPLHLNDHTLAEC--GGRIMLV  362 (468)
Q Consensus       289 ~~~~~p~~~~~~~~~~~~~~~v~~---~G~lY~~~~~-~~~i~~fD~~~~~w~~i~~P~p~~~~~~~l~~~--~G~L~lv  362 (468)
                      .+..  ....       ...++.+   +|.+||.... ...|..+|+....-..+ ..... ..-..|+..  +|+||++
T Consensus       115 ~l~~--~~~~-------~P~giavdp~~g~ly~td~~~~~~I~r~~~dG~~~~~~-~~~~l-~~Pnglavd~~~~~lY~a  183 (318)
T 3sov_A          115 VLFW--QELD-------QPRAIALDPSSGFMYWTDWGEVPKIERAGMDGSSRFII-INSEI-YWPNGLTLDYEEQKLYWA  183 (318)
T ss_dssp             EEEC--SSCS-------SEEEEEEEGGGTEEEEEECSSSCEEEEEETTSCSCEEE-ECSSC-SCEEEEEEETTTTEEEEE
T ss_pred             EEEe--CCCC-------CccEEEEeCCCCEEEEEecCCCCEEEEEEcCCCCeEEE-EECCC-CCccEEEEeccCCEEEEE
Confidence            1110  1111       1224444   5899998743 46899999875433332 11111 111234444  7889987


Q ss_pred             EEEeeCCccEEEEEEEecCCCCeEEEEeeChhhhhcccCcceEEEEEecCCEEEEEeeeCCCCeEEEEECCCCc
Q 012227          363 GLLTKNAATCVCIWELQKMTLLWKEVDRMPNIWCLDFYGKHVRMTCLGNKGLLMLSLRSRQMNRLVTYNVMSRE  436 (468)
Q Consensus       363 ~~~~~~~~~~i~Vw~ld~~~~~W~~v~~mp~~~~~~~~~~~~~~~~~~~~~~I~~~~~~~~~~~l~~YD~~t~~  436 (468)
                      ...    ..  .|++++.....=..+..  ..       ...+......++.+|+.  ......|..+|+.+++
T Consensus       184 D~~----~~--~I~~~d~dG~~~~~~~~--~~-------~~~P~glav~~~~lywt--d~~~~~V~~~~~~~G~  240 (318)
T 3sov_A          184 DAK----LN--FIHKSNLDGTNRQAVVK--GS-------LPHPFALTLFEDILYWT--DWSTHSILACNKYTGE  240 (318)
T ss_dssp             ETT----TT--EEEEEETTSCSCEEEEC--SC-------CSCEEEEEEETTEEEEE--ETTTTEEEEEETTTCC
T ss_pred             ECC----CC--EEEEEcCCCCceEEEec--CC-------CCCceEEEEeCCEEEEE--ecCCCeEEEEECCCCC
Confidence            532    23  56666654222222211  00       01123333346777764  2345789999996554

>1pjx_A Dfpase, DIISOPROPYLFLUOROPHOSPHATASE; phosphotriesterase (PTE), nitrogen-calcium coordination, BET propeller; HET: ME2 MES PGE; 0.85A {Loligo vulgaris} SCOP: b.68.6.1 PDB: 1e1a_A* 2gvv_A* 2gvw_A 3byc_A 3kgg_A 3o4p_A* 3li3_A 2gvx_A 2gvu_A 3li4_A 2iaq_A 3li5_A* 2iao_A 2iap_A 2iau_A 2iax_A 2iaw_A 2ias_A 2iat_A 2iar_A ...

Probab=90.39  E-value=4  Score=37.33  Aligned_cols=198  Identities=7%  Similarity=0.056  Sum_probs=93.6

Q ss_pred             cCceEEEE-------EcCCceEEEEcCCCCceEecCCCCcCCcceeEEEEEEcCCCCCCCeEEEEEEecCcEEEEeCCCC
Q 012227          213 AGGLVCFL-------DIGHRNFYVCNPLTQSFKELPARSVKVWSRVAVGMTLNGNSTSSGYKILWVGCDGEYEIYDSLRN  285 (468)
Q Consensus       213 ~~GLl~~~-------~~~~~~~~V~NP~T~~~~~LP~~~~~~~~~~~~~~~~d~~~~~~~ykVv~v~~~~~v~vy~s~t~  285 (468)
                      .+|-+++.       +.....++++|+.++++..+..+..........++..+  +.  ..++++......+.+|+.. +
T Consensus        27 ~~g~l~~~~~~~~~~~~~~~~i~~~d~~~g~~~~~~~~~~~~~~~~~~~i~~~--~~--~g~l~v~~~~~~l~~~d~~-g  101 (314)
T 1pjx_A           27 KNGDFYIVAPEVEVNGKPAGEILRIDLKTGKKTVICKPEVNGYGGIPAGCQCD--RD--ANQLFVADMRLGLLVVQTD-G  101 (314)
T ss_dssp             TTSCEEEEETTCEETTEECCEEEEECTTTCCEEEEECCEETTEECCEEEEEEC--SS--SSEEEEEETTTEEEEEETT-S
T ss_pred             CCCCEEEEEeccccCCCCCCEEEEEeCCCCcEEEEEecccCCCCCCCceEEEe--cC--CCcEEEEECCCCEEEEeCC-C
Confidence            45655555       33335799999999988765431000001123455555  11  1356655544568899987 6


Q ss_pred             CccCC-CCCCCCcccCcccccccceEEE--CCEEEEEEcCC---------------CeEEEEECCCCeEEEeecCCCCCC
Q 012227          286 SWTRP-GSMPSNIKLPVSLNFRSQAVSV--DGILYFMRSDP---------------EGIVSYNMVTGVWKQFIIPTPLHL  347 (468)
Q Consensus       286 ~W~~~-~~~p~~~~~~~~~~~~~~~v~~--~G~lY~~~~~~---------------~~i~~fD~~~~~w~~i~~P~p~~~  347 (468)
                      +...+ .......  +.  . ....+.+  +|.+|+.....               ..|..||+. ++...+.....   
T Consensus       102 ~~~~~~~~~~~~~--~~--~-~~~~i~~d~~g~l~v~~~~~~~~~~~~~~~~~~~~~~l~~~~~~-g~~~~~~~~~~---  172 (314)
T 1pjx_A          102 TFEEIAKKDSEGR--RM--Q-GCNDCAFDYEGNLWITAPAGEVAPADYTRSMQEKFGSIYCFTTD-GQMIQVDTAFQ---  172 (314)
T ss_dssp             CEEECCSBCTTSC--BC--B-CCCEEEECTTSCEEEEECBCBCTTSCCCBTTSSSCEEEEEECTT-SCEEEEEEEES---
T ss_pred             CEEEEEeccCCCc--cc--c-CCcCEEECCCCCEEEEecCcccccccccccccCCCCeEEEECCC-CCEEEeccCCC---
Confidence            65443 2111110  00  0 1223334  68888766432               468889987 55544311110   


Q ss_pred             CCceEEEE-----CC-eEEEEEEEeeCCccEEEEEEEecCCCCeEEE---EeeChhhhhcccCcceEEEEEecCCEEEEE
Q 012227          348 NDHTLAEC-----GG-RIMLVGLLTKNAATCVCIWELQKMTLLWKEV---DRMPNIWCLDFYGKHVRMTCLGNKGLLMLS  418 (468)
Q Consensus       348 ~~~~l~~~-----~G-~L~lv~~~~~~~~~~i~Vw~ld~~~~~W~~v---~~mp~~~~~~~~~~~~~~~~~~~~~~I~~~  418 (468)
                      ....++..     +| .||+...    ....+.+|.++. ++.....   ..++....    + ...-.++..+|.||+.
T Consensus       173 ~~~~i~~~~~~d~dg~~l~v~~~----~~~~i~~~~~~~-~g~~~~~~~~~~~~~~~~----~-~p~~i~~d~~G~l~v~  242 (314)
T 1pjx_A          173 FPNGIAVRHMNDGRPYQLIVAET----PTKKLWSYDIKG-PAKIENKKVWGHIPGTHE----G-GADGMDFDEDNNLLVA  242 (314)
T ss_dssp             SEEEEEEEECTTSCEEEEEEEET----TTTEEEEEEEEE-TTEEEEEEEEEECCCCSS----C-EEEEEEEBTTCCEEEE
T ss_pred             CcceEEEecccCCCCCEEEEEEC----CCCeEEEEECCC-CCccccceEEEECCCCCC----C-CCCceEECCCCCEEEE
Confidence            01123333     45 3554431    124455555442 2333221   12221100    0 0112234456777764


Q ss_pred             eeeCCCCeEEEEECCCCc
Q 012227          419 LRSRQMNRLVTYNVMSRE  436 (468)
Q Consensus       419 ~~~~~~~~l~~YD~~t~~  436 (468)
                      ..  ..+.|..||+++++
T Consensus       243 ~~--~~~~i~~~d~~~g~  258 (314)
T 1pjx_A          243 NW--GSSHIEVFGPDGGQ  258 (314)
T ss_dssp             EE--TTTEEEEECTTCBS
T ss_pred             Ec--CCCEEEEEcCCCCc
Confidence            32  24579999998554

>4g56_B MGC81050 protein; protein arginine methyltransferase, protein complexes, histo methylation, transferase; HET: SAH; 2.95A {Xenopus laevis}

Probab=90.27  E-value=7.4  Score=36.76  Aligned_cols=110  Identities=9%  Similarity=-0.009  Sum_probs=57.5

Q ss_pred             ecCceEEEEEcCCceEEEEcCCCCceEecCCCCcCCcceeEEEEEEcCCCCCCCeEEEEEEecCcEEEEeCCCCCccCCC
Q 012227          212 SAGGLVCFLDIGHRNFYVCNPLTQSFKELPARSVKVWSRVAVGMTLNGNSTSSGYKILWVGCDGEYEIYDSLRNSWTRPG  291 (468)
Q Consensus       212 s~~GLl~~~~~~~~~~~V~NP~T~~~~~LP~~~~~~~~~~~~~~~~d~~~~~~~ykVv~v~~~~~v~vy~s~t~~W~~~~  291 (468)
                      +.+|-.++.......+.+||..+++....-.  ........+.+  .   ..+...++..+.++.+.+||..++.-...-
T Consensus       148 spdg~~l~sgs~dg~v~iwd~~~~~~~~~~~--~h~~~v~~v~~--s---~~~~~~~~s~~~dg~v~~wd~~~~~~~~~~  220 (357)
T 4g56_B          148 FSDGTQAVSGGKDFSVKVWDLSQKAVLKSYN--AHSSEVNCVAA--C---PGKDTIFLSCGEDGRILLWDTRKPKPATRI  220 (357)
T ss_dssp             CSSSSEEEEEETTSCEEEEETTTTEEEEEEC--CCSSCEEEEEE--C---TTCSSCEEEEETTSCEEECCTTSSSCBCBC
T ss_pred             CCCCCEEEEEeCCCeEEEEECCCCcEEEEEc--CCCCCEEEEEE--c---cCCCceeeeeccCCceEEEECCCCceeeee
Confidence            4466555655555679999999887653222  11112222333  2   122334444555677999998876532211


Q ss_pred             CCCCCcccCcccccccceEEE---CCEEEEEEcCCCeEEEEECCCCe
Q 012227          292 SMPSNIKLPVSLNFRSQAVSV---DGILYFMRSDPEGIVSYNMVTGV  335 (468)
Q Consensus       292 ~~p~~~~~~~~~~~~~~~v~~---~G~lY~~~~~~~~i~~fD~~~~~  335 (468)
                      .....       ......+.+   ++.+.+.+.....|..||+.+.+
T Consensus       221 ~~~~~-------~~~v~~v~~sp~~~~~la~g~~d~~i~~wd~~~~~  260 (357)
T 4g56_B          221 DFCAS-------DTIPTSVTWHPEKDDTFACGDETGNVSLVNIKNPD  260 (357)
T ss_dssp             CCTTC-------CSCEEEEEECTTSTTEEEEEESSSCEEEEESSCGG
T ss_pred             eeccc-------cccccchhhhhcccceEEEeecccceeEEECCCCc
Confidence            11100       001122333   35555555555678889988754

>3u4y_A Uncharacterized protein; structural genomics, PSI-biology, protein structure initiati midwest center for structural genomi CS, MCSG; 2.99A {Desulfotomaculum acetoxidans}

Probab=90.24  E-value=10  Score=34.79  Aligned_cols=191  Identities=9%  Similarity=0.080  Sum_probs=94.0

Q ss_pred             cCceEEEEEcCCceEEEEcCCCCceEecCCCCcCCcceeEEEEEEcCCCCCCCeEEEEEEe-cCcEEEEeCCCCCc-cCC
Q 012227          213 AGGLVCFLDIGHRNFYVCNPLTQSFKELPARSVKVWSRVAVGMTLNGNSTSSGYKILWVGC-DGEYEIYDSLRNSW-TRP  290 (468)
Q Consensus       213 ~~GLl~~~~~~~~~~~V~NP~T~~~~~LP~~~~~~~~~~~~~~~~d~~~~~~~ykVv~v~~-~~~v~vy~s~t~~W-~~~  290 (468)
                      ..+.+++.......+.++|+.|++....-...  ...  . ++.+++  . + -.+++... +..+.+||..++.- ...
T Consensus         8 ~~~~~~v~~~~~~~v~~~d~~~~~~~~~~~~~--~~~--~-~~~~s~--d-g-~~l~~~~~~~~~i~~~d~~~~~~~~~~   78 (331)
T 3u4y_A            8 TSNFGIVVEQHLRRISFFSTDTLEILNQITLG--YDF--V-DTAITS--D-C-SNVVVTSDFCQTLVQIETQLEPPKVVA   78 (331)
T ss_dssp             CCCEEEEEEGGGTEEEEEETTTCCEEEEEECC--CCE--E-EEEECS--S-S-CEEEEEESTTCEEEEEECSSSSCEEEE
T ss_pred             CCCEEEEEecCCCeEEEEeCcccceeeeEEcc--CCc--c-eEEEcC--C-C-CEEEEEeCCCCeEEEEECCCCceeEEe
Confidence            34556666665668999999999875432221  111  1 344442  1 1 23554444 45699999887753 111


Q ss_pred             CCCCCCcccCcccccccceEEE--CCE-EEEEEcCC-C--eEEEEECCCCeEEEeecCCCCCCCCceEEEE-CCe-EEEE
Q 012227          291 GSMPSNIKLPVSLNFRSQAVSV--DGI-LYFMRSDP-E--GIVSYNMVTGVWKQFIIPTPLHLNDHTLAEC-GGR-IMLV  362 (468)
Q Consensus       291 ~~~p~~~~~~~~~~~~~~~v~~--~G~-lY~~~~~~-~--~i~~fD~~~~~w~~i~~P~p~~~~~~~l~~~-~G~-L~lv  362 (468)
                        ....       .....++.+  +|. +| ..... .  .|..+|+.+.+.... ++....  ...++.. +|+ |++.
T Consensus        79 --~~~~-------~~~~~~~~~s~dg~~l~-~~~~~~~~~~i~v~d~~~~~~~~~-~~~~~~--~~~~~~spdg~~l~~~  145 (331)
T 3u4y_A           79 --IQEG-------QSSMADVDITPDDQFAV-TVTGLNHPFNMQSYSFLKNKFIST-IPIPYD--AVGIAISPNGNGLILI  145 (331)
T ss_dssp             --EEEC-------SSCCCCEEECTTSSEEE-ECCCSSSSCEEEEEETTTTEEEEE-EECCTT--EEEEEECTTSSCEEEE
T ss_pred             --cccC-------CCCccceEECCCCCEEE-EecCCCCcccEEEEECCCCCeEEE-EECCCC--ccceEECCCCCEEEEE
Confidence              0000       001111222  444 55 43332 2  799999998876543 332211  1223332 665 5554


Q ss_pred             EEEeeCCccEEEEEEEecCCCCeEE-EEeeChhhhhcccCcceEEEEEe-cCCEEEEEeeeCCCCeEEEEECCCCcE
Q 012227          363 GLLTKNAATCVCIWELQKMTLLWKE-VDRMPNIWCLDFYGKHVRMTCLG-NKGLLMLSLRSRQMNRLVTYNVMSREW  437 (468)
Q Consensus       363 ~~~~~~~~~~i~Vw~ld~~~~~W~~-v~~mp~~~~~~~~~~~~~~~~~~-~~~~I~~~~~~~~~~~l~~YD~~t~~w  437 (468)
                      .. .  ....+.+|.++........ ...++.       +....-.++. ++..+|+..  ...+.+.+||+++++.
T Consensus       146 ~~-~--~~~~i~~~~~~~~g~~~~~~~~~~~~-------~~~~~~~~~spdg~~l~v~~--~~~~~v~v~d~~~~~~  210 (331)
T 3u4y_A          146 DR-S--SANTVRRFKIDADGVLFDTGQEFISG-------GTRPFNITFTPDGNFAFVAN--LIGNSIGILETQNPEN  210 (331)
T ss_dssp             EE-T--TTTEEEEEEECTTCCEEEEEEEEECS-------SSSEEEEEECTTSSEEEEEE--TTTTEEEEEECSSTTS
T ss_pred             ec-C--CCceEEEEEECCCCcEeecCCccccC-------CCCccceEECCCCCEEEEEe--CCCCeEEEEECCCCcc
Confidence            32 1  1233889988854221111 111111       1111122333 344576643  2356899999988764

>4aow_A Guanine nucleotide-binding protein subunit beta-2; receptor, WD-repeat, beta-propeller; 2.45A {Homo sapiens} PDB: 2zkq_a

Probab=90.17  E-value=8.8  Score=35.17  Aligned_cols=102  Identities=16%  Similarity=0.084  Sum_probs=48.6

Q ss_pred             cCCceEEEEcCCCCceEecCCCCcCCcceeEEEEEEcCCCCCCCeEEEEEEecCcEEEEeCCCCCccCCCCCCCCcccCc
Q 012227          222 IGHRNFYVCNPLTQSFKELPARSVKVWSRVAVGMTLNGNSTSSGYKILWVGCDGEYEIYDSLRNSWTRPGSMPSNIKLPV  301 (468)
Q Consensus       222 ~~~~~~~V~NP~T~~~~~LP~~~~~~~~~~~~~~~~d~~~~~~~ykVv~v~~~~~v~vy~s~t~~W~~~~~~p~~~~~~~  301 (468)
                      .....+.+||............. .......+.+..+    .....++..+.+..+.+||..++.-...  +... .   
T Consensus       147 s~d~~~~~~d~~~~~~~~~~~~~-~~~~v~~~~~~~~----~~~~~~~s~~~d~~i~i~d~~~~~~~~~--~~~h-~---  215 (340)
T 4aow_A          147 SRDKTIKLWNTLGVCKYTVQDES-HSEWVSCVRFSPN----SSNPIIVSCGWDKLVKVWNLANCKLKTN--HIGH-T---  215 (340)
T ss_dssp             ETTSCEEEECTTSCEEEEECSSS-CSSCEEEEEECSC----SSSCEEEEEETTSCEEEEETTTTEEEEE--ECCC-S---
T ss_pred             cCCCeEEEEEeCCCceEEEEecc-ccCcccceEEccC----CCCcEEEEEcCCCEEEEEECCCCceeeE--ecCC-C---
Confidence            33456778887655443332211 1111222233211    2222333334456699999887653211  0000 0   


Q ss_pred             ccccccceEEE--CCEEEEEEcCCCeEEEEECCCCeEE
Q 012227          302 SLNFRSQAVSV--DGILYFMRSDPEGIVSYNMVTGVWK  337 (468)
Q Consensus       302 ~~~~~~~~v~~--~G~lY~~~~~~~~i~~fD~~~~~w~  337 (468)
                         ..-.++.+  +|.+.+.+.....|..||+.+..-.
T Consensus       216 ---~~v~~~~~s~~~~~l~s~s~Dg~i~iwd~~~~~~~  250 (340)
T 4aow_A          216 ---GYLNTVTVSPDGSLCASGGKDGQAMLWDLNEGKHL  250 (340)
T ss_dssp             ---SCEEEEEECTTSSEEEEEETTCEEEEEETTTTEEE
T ss_pred             ---CcEEEEEECCCCCEEEEEeCCCeEEEEEeccCcee
Confidence               00112222  5666666656678889999887543

>3hrp_A Uncharacterized protein; NP_812590.1, structural genomics protein of unknown function structural genomics; HET: MSE; 1.70A {Bacteroides thetaiotaomicron vpi-5482}

Probab=90.08  E-value=11  Score=36.71  Aligned_cols=205  Identities=10%  Similarity=0.004  Sum_probs=103.2

Q ss_pred             ecCceEEEEEcCCceEEEEcCCCCceEecCCCCcCCcceeEEEEEEcCCCCCCCeEEEEEEecC--cEEEEeCCCCC-cc
Q 012227          212 SAGGLVCFLDIGHRNFYVCNPLTQSFKELPARSVKVWSRVAVGMTLNGNSTSSGYKILWVGCDG--EYEIYDSLRNS-WT  288 (468)
Q Consensus       212 s~~GLl~~~~~~~~~~~V~NP~T~~~~~LP~~~~~~~~~~~~~~~~d~~~~~~~ykVv~v~~~~--~v~vy~s~t~~-W~  288 (468)
                      ..+|-|++.+....++.++|+.+++...+.....   ... +  .++  +.  .-.+++.....  .+.+++..++. ..
T Consensus       139 d~~g~lyv~d~~~~~I~~id~~~g~~~~~~~~~~---~~~-i--a~~--~~--g~~l~~~d~~~~~~I~~~d~~~~~~~~  208 (409)
T 3hrp_A          139 VGNNTVLAYQRDDPRVRLISVDDNKVTTVHPGFK---GGK-P--AVT--KD--KQRVYSIGWEGTHTVYVYMKASGWAPT  208 (409)
T ss_dssp             CSTTEEEEEETTTTEEEEEETTTTEEEEEEETCC---BCB-C--EEC--TT--SSEEEEEBSSTTCEEEEEEGGGTTCEE
T ss_pred             eCCCCEEEEecCCCcEEEEECCCCEEEEeeccCC---CCc-e--eEe--cC--CCcEEEEecCCCceEEEEEcCCCceeE
Confidence            3677788888777789999999988776544211   111 2  233  11  12455444333  57777765432 11


Q ss_pred             CCCCCCC-CcccCcccccccceEEE---CCEEEEEEcCCCeEEEEECCCCeEEEeec--CCCCCCCC-c-eEEEE--CCe
Q 012227          289 RPGSMPS-NIKLPVSLNFRSQAVSV---DGILYFMRSDPEGIVSYNMVTGVWKQFII--PTPLHLND-H-TLAEC--GGR  358 (468)
Q Consensus       289 ~~~~~p~-~~~~~~~~~~~~~~v~~---~G~lY~~~~~~~~i~~fD~~~~~w~~i~~--P~p~~~~~-~-~l~~~--~G~  358 (468)
                      .+..... ...       ...++.+   +|.||+ ......|..||+.+.....+..  ........ . .++..  +|.
T Consensus       209 ~~g~~~~~~~~-------~p~~iav~p~~g~lyv-~d~~~~I~~~d~~~~~~~~~~~~~~~g~~~~~P~~~ia~~p~~g~  280 (409)
T 3hrp_A          209 RIGQLGSTFSG-------KIGAVALDETEEWLYF-VDSNKNFGRFNVKTQEVTLIKQLELSGSLGTNPGPYLIYYFVDSN  280 (409)
T ss_dssp             EEEECCTTSCS-------CCCBCEECTTSSEEEE-ECTTCEEEEEETTTCCEEEEEECCCCSCCCCSSCCEEEEETTTTE
T ss_pred             EeeeccchhcC-------CcEEEEEeCCCCeEEE-EECCCcEEEEECCCCCEEEEecccccCCCCCCccccEEEeCCCCE
Confidence            2211000 000       1112223   689999 4445679999998876554411  11111122 1 55555  588


Q ss_pred             EEEEEEEeeCCccEEEEEEEecCCCCeEEEEeeC-h-hhhhcc---cCcceE-EEEEecCCEEEEEeeeCCCCeEEEEEC
Q 012227          359 IMLVGLLTKNAATCVCIWELQKMTLLWKEVDRMP-N-IWCLDF---YGKHVR-MTCLGNKGLLMLSLRSRQMNRLVTYNV  432 (468)
Q Consensus       359 L~lv~~~~~~~~~~i~Vw~ld~~~~~W~~v~~mp-~-~~~~~~---~~~~~~-~~~~~~~~~I~~~~~~~~~~~l~~YD~  432 (468)
                      ||+....    ..  .|++++.... ...+..-+ . ......   .....+ -.++..+|.||+... ....+|..+|+
T Consensus       281 lyv~d~~----~~--~I~~~~~~g~-~~~~~g~~~~~g~~dg~~~~~~~~~P~gia~d~dG~lyvad~-~~~~~I~~~~~  352 (409)
T 3hrp_A          281 FYMSDQN----LS--SVYKITPDGE-CEWFCGSATQKTVQDGLREEALFAQPNGMTVDEDGNFYIVDG-FKGYCLRKLDI  352 (409)
T ss_dssp             EEEEETT----TT--EEEEECTTCC-EEEEEECTTCCSCBCEEGGGCBCSSEEEEEECTTCCEEEEET-TTTCEEEEEET
T ss_pred             EEEEeCC----CC--EEEEEecCCC-EEEEEeCCCCCCcCCCcccccEeCCCeEEEEeCCCCEEEEeC-CCCCEEEEEEC
Confidence            9876531    12  5666665432 22221111 0 000000   000112 234444566877532 03578999998


Q ss_pred             CCCcEEEccC
Q 012227          433 MSREWLKVPG  442 (468)
Q Consensus       433 ~t~~w~~v~~  442 (468)
                      .+++...+.+
T Consensus       353 ~~G~v~~~~g  362 (409)
T 3hrp_A          353 LDGYVSTVAG  362 (409)
T ss_dssp             TTTEEEEEEE
T ss_pred             CCCEEEEEeC
Confidence            8888877754

>3vl1_A 26S proteasome regulatory subunit RPN14; beta-propeller, chaperone, RPT6; 1.60A {Saccharomyces cerevisiae} PDB: 3acp_A

Probab=89.88  E-value=14  Score=35.20  Aligned_cols=110  Identities=13%  Similarity=0.070  Sum_probs=57.1

Q ss_pred             ecCceEEEEEcCCceEEEEcCCCCceEecCCCCcCCcceeEEEEEEcCCCCCCCeEEEEEEecCcEEEEeCCCCCccCCC
Q 012227          212 SAGGLVCFLDIGHRNFYVCNPLTQSFKELPARSVKVWSRVAVGMTLNGNSTSSGYKILWVGCDGEYEIYDSLRNSWTRPG  291 (468)
Q Consensus       212 s~~GLl~~~~~~~~~~~V~NP~T~~~~~LP~~~~~~~~~~~~~~~~d~~~~~~~ykVv~v~~~~~v~vy~s~t~~W~~~~  291 (468)
                      +.+|-.++.......+.+||..+++....-..  ....  ...+.+.+  .  .-.++..+.++.+.+||..++.=  +.
T Consensus       106 ~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~--h~~~--v~~~~~~~--~--~~~l~s~s~d~~i~iwd~~~~~~--~~  175 (420)
T 3vl1_A          106 KLQMRRFILGTTEGDIKVLDSNFNLQREIDQA--HVSE--ITKLKFFP--S--GEALISSSQDMQLKIWSVKDGSN--PR  175 (420)
T ss_dssp             CSSSCEEEEEETTSCEEEECTTSCEEEEETTS--SSSC--EEEEEECT--T--SSEEEEEETTSEEEEEETTTCCC--CE
T ss_pred             ecCCCEEEEEECCCCEEEEeCCCcceeeeccc--ccCc--cEEEEECC--C--CCEEEEEeCCCeEEEEeCCCCcC--ce
Confidence            44565555555556899999988877654321  1111  23334442  1  12444444456799999876531  11


Q ss_pred             CCCCCcccCcccccccceEEE--CCEEEEEEcCCCeEEEEECCCCeEEE
Q 012227          292 SMPSNIKLPVSLNFRSQAVSV--DGILYFMRSDPEGIVSYNMVTGVWKQ  338 (468)
Q Consensus       292 ~~p~~~~~~~~~~~~~~~v~~--~G~lY~~~~~~~~i~~fD~~~~~w~~  338 (468)
                      .+...       ...-..+.+  +|...+.+.....|..+|+.+.+-..
T Consensus       176 ~~~~h-------~~~v~~~~~~~~~~~l~s~~~d~~v~iwd~~~~~~~~  217 (420)
T 3vl1_A          176 TLIGH-------RATVTDIAIIDRGRNVLSASLDGTIRLWECGTGTTIH  217 (420)
T ss_dssp             EEECC-------SSCEEEEEEETTTTEEEEEETTSCEEEEETTTTEEEE
T ss_pred             EEcCC-------CCcEEEEEEcCCCCEEEEEcCCCcEEEeECCCCceeE
Confidence            11000       000112222  55555555555679999998876443

>3ei3_B DNA damage-binding protein 2; UV-damage, DDB, nucleotide excision repair, xeroderma pigmentosum, cytoplasm, DNA repair; HET: DNA PG4; 2.30A {Danio rerio} PDB: 3ei1_B* 3ei2_B* 4a08_B* 4a09_B* 4a0a_B* 4a0b_B* 4a0k_D* 4a0l_B*

Probab=89.85  E-value=13  Score=34.94  Aligned_cols=186  Identities=13%  Similarity=0.079  Sum_probs=85.3

Q ss_pred             CceEEEEcCCCCceEecCCCCcCCcceeEEEEEEcCCCCCCCeEEEEEEecCcEEEEeCCCCCccCCCCCCCCcccCccc
Q 012227          224 HRNFYVCNPLTQSFKELPARSVKVWSRVAVGMTLNGNSTSSGYKILWVGCDGEYEIYDSLRNSWTRPGSMPSNIKLPVSL  303 (468)
Q Consensus       224 ~~~~~V~NP~T~~~~~LP~~~~~~~~~~~~~~~~d~~~~~~~ykVv~v~~~~~v~vy~s~t~~W~~~~~~p~~~~~~~~~  303 (468)
                      ...+.|||..+++....-.........  ..+.+.+  . +...++..+.++.+.+||..++........... ..    
T Consensus        95 dg~i~iwd~~~~~~~~~~~~~~h~~~v--~~~~~~~--~-~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~-~~----  164 (383)
T 3ei3_B           95 GGDIILWDYDVQNKTSFIQGMGPGDAI--TGMKFNQ--F-NTNQLFVSSIRGATTLRDFSGSVIQVFAKTDSW-DY----  164 (383)
T ss_dssp             TSCEEEEETTSTTCEEEECCCSTTCBE--EEEEEET--T-EEEEEEEEETTTEEEEEETTSCEEEEEECCCCS-SC----
T ss_pred             CCeEEEEeCCCcccceeeecCCcCCce--eEEEeCC--C-CCCEEEEEeCCCEEEEEECCCCceEEEeccCCC-CC----
Confidence            346888888877765443321111222  2333331  0 123344444456799999886554433211100 00    


Q ss_pred             ccccceEEECCEEEEEEcCCCeEEEEECCCCeEEEeecCCCCCCCCceEEEE--CCe-EEEEEEEeeCCccEEEEEEEec
Q 012227          304 NFRSQAVSVDGILYFMRSDPEGIVSYNMVTGVWKQFIIPTPLHLNDHTLAEC--GGR-IMLVGLLTKNAATCVCIWELQK  380 (468)
Q Consensus       304 ~~~~~~v~~~G~lY~~~~~~~~i~~fD~~~~~w~~i~~P~p~~~~~~~l~~~--~G~-L~lv~~~~~~~~~~i~Vw~ld~  380 (468)
                      ....-...-+|.+.+.+.....|..+|+..+....+..    +.....-+.+  +|+ +++.+..    ...+.||.+..
T Consensus       165 ~v~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~----h~~~v~~~~~~~~~~~~l~s~~~----d~~i~iwd~~~  236 (383)
T 3ei3_B          165 WYCCVDVSVSRQMLATGDSTGRLLLLGLDGHEIFKEKL----HKAKVTHAEFNPRCDWLMATSSV----DATVKLWDLRN  236 (383)
T ss_dssp             CEEEEEEETTTTEEEEEETTSEEEEEETTSCEEEEEEC----SSSCEEEEEECSSCTTEEEEEET----TSEEEEEEGGG
T ss_pred             CeEEEEECCCCCEEEEECCCCCEEEEECCCCEEEEecc----CCCcEEEEEECCCCCCEEEEEeC----CCEEEEEeCCC
Confidence            00011111256655566666789999996665544421    1111222222  455 5554432    25789997765


Q ss_pred             CCCCeEEEEeeChhhhhcccCcceEEEEEec-CCEEEEEeeeCCCCeEEEEECCCCc
Q 012227          381 MTLLWKEVDRMPNIWCLDFYGKHVRMTCLGN-KGLLMLSLRSRQMNRLVTYNVMSRE  436 (468)
Q Consensus       381 ~~~~W~~v~~mp~~~~~~~~~~~~~~~~~~~-~~~I~~~~~~~~~~~l~~YD~~t~~  436 (468)
                      ....-..+..++..      + .+.-.++.. ++..++...  ..+.+.+||+.+.+
T Consensus       237 ~~~~~~~~~~~~~~------~-~v~~~~~s~~~~~~l~~~~--~d~~i~iwd~~~~~  284 (383)
T 3ei3_B          237 IKDKNSYIAEMPHE------K-PVNAAYFNPTDSTKLLTTD--QRNEIRVYSSYDWS  284 (383)
T ss_dssp             CCSTTCEEEEEECS------S-CEEEEEECTTTSCEEEEEE--SSSEEEEEETTBTT
T ss_pred             CCcccceEEEecCC------C-ceEEEEEcCCCCCEEEEEc--CCCcEEEEECCCCc
Confidence            32222222222110      0 011112222 343333222  34688999987653

>3bws_A Protein LP49; two-domain, immunoglobulin-like, 7-bladed beta propeller, unknown function; 1.99A {Leptospira interrogans}

Probab=89.69  E-value=4.5  Score=38.98  Aligned_cols=192  Identities=11%  Similarity=0.102  Sum_probs=93.7

Q ss_pred             ecCceEEEEEcCCceEEEEcCCCCceEe-cCCCCcCCcceeEEEEEEcCCCCCCCeEEEEEE-ecCcEEEEeCCCCCccC
Q 012227          212 SAGGLVCFLDIGHRNFYVCNPLTQSFKE-LPARSVKVWSRVAVGMTLNGNSTSSGYKILWVG-CDGEYEIYDSLRNSWTR  289 (468)
Q Consensus       212 s~~GLl~~~~~~~~~~~V~NP~T~~~~~-LP~~~~~~~~~~~~~~~~d~~~~~~~ykVv~v~-~~~~v~vy~s~t~~W~~  289 (468)
                      +.+|-+++.......+.+||+.+++... ++...   ...  .++.+++    ..-.+++.+ .++.+.+||..+++...
T Consensus       178 ~~~~~~~~s~~~d~~v~~~d~~~~~~~~~~~~~~---~~~--~~~~~~~----~~~~l~~~~~~~~~i~~~d~~~~~~~~  248 (433)
T 3bws_A          178 PEHNELWVSQMQANAVHVFDLKTLAYKATVDLTG---KWS--KILLYDP----IRDLVYCSNWISEDISVIDRKTKLEIR  248 (433)
T ss_dssp             GGGTEEEEEEGGGTEEEEEETTTCCEEEEEECSS---SSE--EEEEEET----TTTEEEEEETTTTEEEEEETTTTEEEE
T ss_pred             cCCCEEEEEECCCCEEEEEECCCceEEEEEcCCC---CCe--eEEEEcC----CCCEEEEEecCCCcEEEEECCCCcEEE
Confidence            4577777777666789999998876543 33211   112  2333331    112454444 35669999988765432


Q ss_pred             CCCCCCCcccCcccccccceEEE--CC-EEEEEEc-------CCCeEEEEECCCCeEEEeecCCCCCCCCceEEEE-CC-
Q 012227          290 PGSMPSNIKLPVSLNFRSQAVSV--DG-ILYFMRS-------DPEGIVSYNMVTGVWKQFIIPTPLHLNDHTLAEC-GG-  357 (468)
Q Consensus       290 ~~~~p~~~~~~~~~~~~~~~v~~--~G-~lY~~~~-------~~~~i~~fD~~~~~w~~i~~P~p~~~~~~~l~~~-~G-  357 (468)
                      .-  +...        ....+.+  +| .++....       ....|..||+.+++.... ...+.  ....++.. +| 
T Consensus       249 ~~--~~~~--------~~~~~~~~~~g~~l~~~~~~~~~~~~~dg~i~~~d~~~~~~~~~-~~~~~--~~~~~~~~~~g~  315 (433)
T 3bws_A          249 KT--DKIG--------LPRGLLLSKDGKELYIAQFSASNQESGGGRLGIYSMDKEKLIDT-IGPPG--NKRHIVSGNTEN  315 (433)
T ss_dssp             EC--CCCS--------EEEEEEECTTSSEEEEEEEESCTTCSCCEEEEEEETTTTEEEEE-EEEEE--CEEEEEECSSTT
T ss_pred             Ee--cCCC--------CceEEEEcCCCCEEEEEECCCCccccCCCeEEEEECCCCcEEee-ccCCC--CcceEEECCCCC
Confidence            11  1110        0112223  45 4444432       234788999988765443 11111  11122222 45 


Q ss_pred             eEEEEEEEeeCCccEEEEEEEecCCCCeEEEEeeChhhhhcccCcceEEEEEe-cCCEEEEEeeeCC------------C
Q 012227          358 RIMLVGLLTKNAATCVCIWELQKMTLLWKEVDRMPNIWCLDFYGKHVRMTCLG-NKGLLMLSLRSRQ------------M  424 (468)
Q Consensus       358 ~L~lv~~~~~~~~~~i~Vw~ld~~~~~W~~v~~mp~~~~~~~~~~~~~~~~~~-~~~~I~~~~~~~~------------~  424 (468)
                      .|++.+.    ....+.+|.++.    .+.+..++...       ...-.++. ++..+++......            .
T Consensus       316 ~l~~~~~----~~~~v~v~d~~~----~~~~~~~~~~~-------~~~~~~~s~dg~~l~~~~~~~~~~~~~~~~~g~~d  380 (433)
T 3bws_A          316 KIYVSDM----CCSKIEVYDLKE----KKVQKSIPVFD-------KPNTIALSPDGKYLYVSCRGPNHPTEGYLKKGLVL  380 (433)
T ss_dssp             EEEEEET----TTTEEEEEETTT----TEEEEEEECSS-------SEEEEEECTTSSEEEEEECCCCCTTTCTTSCCSSC
T ss_pred             EEEEEec----CCCEEEEEECCC----CcEEEEecCCC-------CCCeEEEcCCCCEEEEEecCCCccccccccccccc
Confidence            4555432    235677785442    23333332110       01122333 3445665432211            2


Q ss_pred             CeEEEEECCCCcEEEc
Q 012227          425 NRLVTYNVMSREWLKV  440 (468)
Q Consensus       425 ~~l~~YD~~t~~w~~v  440 (468)
                      +.+.+||+++++....
T Consensus       381 g~v~~~d~~~~~~~~~  396 (433)
T 3bws_A          381 GKVYVIDTTTDTVKEF  396 (433)
T ss_dssp             CEEEEEETTTTEEEEE
T ss_pred             eEEEEEECCCCcEEEE
Confidence            4899999998875543

>1qks_A Cytochrome CD1 nitrite reductase; enzyme, oxidoreductase, denitrification, electron transport, periplasmic; HET: HEC DHE; 1.28A {Paracoccus pantotrophus} SCOP: a.3.1.2 b.70.2.1 PDB: 1aof_A* 1aoq_A* 1aom_A* 1e2r_A* 1hj5_A* 1h9x_A* 1h9y_A* 1hcm_A* 1hj3_A* 1hj4_A* 1dy7_A* 1gq1_A*

Probab=89.48  E-value=20  Score=36.61  Aligned_cols=194  Identities=12%  Similarity=0.032  Sum_probs=97.8

Q ss_pred             CceEEEEEcCCceEEEEcCCCCceE-ecCCCCcCCcceeEEEEEEcCCCCCCCeEEEEEEecCcEEEEeCCCCCccCCCC
Q 012227          214 GGLVCFLDIGHRNFYVCNPLTQSFK-ELPARSVKVWSRVAVGMTLNGNSTSSGYKILWVGCDGEYEIYDSLRNSWTRPGS  292 (468)
Q Consensus       214 ~GLl~~~~~~~~~~~V~NP~T~~~~-~LP~~~~~~~~~~~~~~~~d~~~~~~~ykVv~v~~~~~v~vy~s~t~~W~~~~~  292 (468)
                      ++++++.......+.|+|+.|++.. .++...    ..  .++.+++    +.-.+++.+.++.+.+||..+.+-+.+..
T Consensus       166 ~~~~~V~~~~~~~V~viD~~t~~v~~~i~~g~----~p--~~v~~Sp----DGr~lyv~~~dg~V~viD~~~~t~~~v~~  235 (567)
T 1qks_A          166 ENLFSVTLRDAGQIALIDGSTYEIKTVLDTGY----AV--HISRLSA----SGRYLFVIGRDGKVNMIDLWMKEPTTVAE  235 (567)
T ss_dssp             GGEEEEEETTTTEEEEEETTTCCEEEEEECSS----CE--EEEEECT----TSCEEEEEETTSEEEEEETTSSSCCEEEE
T ss_pred             CceEEEEeCCCCeEEEEECCCCeEEEEEeCCC----Cc--cceEECC----CCCEEEEEcCCCeEEEEECCCCCCcEeEE
Confidence            4566677666778999999998765 354321    11  1333331    12245555555679999985222222222


Q ss_pred             CCCCcccCcccccccceEEE------CC-EEEEEEcCCCeEEEEECCCCeEEE-eecCC-CCCC----CC---ceEEEE-
Q 012227          293 MPSNIKLPVSLNFRSQAVSV------DG-ILYFMRSDPEGIVSYNMVTGVWKQ-FIIPT-PLHL----ND---HTLAEC-  355 (468)
Q Consensus       293 ~p~~~~~~~~~~~~~~~v~~------~G-~lY~~~~~~~~i~~fD~~~~~w~~-i~~P~-p~~~----~~---~~l~~~-  355 (468)
                      ++...        ....+.+      +| .+|+.......+.++|..+.+-.. ++... +...    ..   ..++.. 
T Consensus       236 i~~G~--------~P~~ia~s~~~~pDGk~l~v~n~~~~~v~ViD~~t~~~~~~i~~~~~~~~~~~~~p~~rva~i~~s~  307 (567)
T 1qks_A          236 IKIGS--------EARSIETSKMEGWEDKYAIAGAYWPPQYVIMDGETLEPKKIQSTRGMTYDEQEYHPEPRVAAILASH  307 (567)
T ss_dssp             EECCS--------EEEEEEECCSTTCTTTEEEEEEEETTEEEEEETTTCCEEEEEECCEECTTTCCEESCCCEEEEEECS
T ss_pred             EecCC--------CCceeEEccccCCCCCEEEEEEccCCeEEEEECCCCcEEEEEeccccccccccccCCCceEEEEEcC
Confidence            22110        1112222      45 567766666789999988765443 22211 1110    01   112222 


Q ss_pred             CCeEEEEEEEeeCCccEEEEEEEecCCCCeEEEEeeChhhhhcccCcceEEEEEe-cCCEEEEEeeeCCCCeEEEEECCC
Q 012227          356 GGRIMLVGLLTKNAATCVCIWELQKMTLLWKEVDRMPNIWCLDFYGKHVRMTCLG-NKGLLMLSLRSRQMNRLVTYNVMS  434 (468)
Q Consensus       356 ~G~L~lv~~~~~~~~~~i~Vw~ld~~~~~W~~v~~mp~~~~~~~~~~~~~~~~~~-~~~~I~~~~~~~~~~~l~~YD~~t  434 (468)
                      ++..+++...   ...  +||..+.......++..++...+.       .-..+. .+..+|+..  ...+.+.++|.++
T Consensus       308 ~~~~~vv~~~---~~g--~v~~vd~~~~~~~~v~~i~~~~~~-------~d~~~~pdgr~~~va~--~~sn~V~ViD~~t  373 (567)
T 1qks_A          308 YRPEFIVNVK---ETG--KILLVDYTDLNNLKTTEISAERFL-------HDGGLDGSHRYFITAA--NARNKLVVIDTKE  373 (567)
T ss_dssp             SSSEEEEEET---TTT--EEEEEETTCSSEEEEEEEECCSSE-------EEEEECTTSCEEEEEE--GGGTEEEEEETTT
T ss_pred             CCCEEEEEec---CCC--eEEEEecCCCccceeeeeeccccc-------cCceECCCCCEEEEEe--CCCCeEEEEECCC
Confidence            3444554431   112  566667655555555555432211       112233 334454432  3357899999999


Q ss_pred             CcEEE
Q 012227          435 REWLK  439 (468)
Q Consensus       435 ~~w~~  439 (468)
                      ++...
T Consensus       374 ~kl~~  378 (567)
T 1qks_A          374 GKLVA  378 (567)
T ss_dssp             TEEEE
T ss_pred             CcEEE
Confidence            87653

>1ijq_A LDL receptor, low-density lipoprotein receptor; beta-propeller, lipid transport; 1.50A {Homo sapiens} SCOP: b.68.5.1 g.3.11.1

Probab=89.39  E-value=13  Score=34.41  Aligned_cols=149  Identities=14%  Similarity=0.161  Sum_probs=80.5

Q ss_pred             eeecCceEEEEEcCCceEEEEcCCCCceEecCCCCcCCcceeEEEEEEcCCCCCCCeEEEEEEec--CcEEEEeCCCCCc
Q 012227          210 VASAGGLVCFLDIGHRNFYVCNPLTQSFKELPARSVKVWSRVAVGMTLNGNSTSSGYKILWVGCD--GEYEIYDSLRNSW  287 (468)
Q Consensus       210 ~~s~~GLl~~~~~~~~~~~V~NP~T~~~~~LP~~~~~~~~~~~~~~~~d~~~~~~~ykVv~v~~~--~~v~vy~s~t~~W  287 (468)
                      ++..+|.|++.+....++.++|+-.+..+.+-.....    ..-++.+|+  .  ..++++....  ..+++++.....=
T Consensus        84 vd~~~~~ly~~d~~~~~I~~~~~~g~~~~~~~~~~~~----~P~~iavdp--~--~g~ly~~d~~~~~~I~~~~~dG~~~  155 (316)
T 1ijq_A           84 VDWIHSNIYWTDSVLGTVSVADTKGVKRKTLFRENGS----KPRAIVVDP--V--HGFMYWTDWGTPAKIKKGGLNGVDI  155 (316)
T ss_dssp             EETTTTEEEEEETTTTEEEEEETTSSSEEEEEECTTC----CEEEEEEET--T--TTEEEEEECSSSCEEEEEETTSCCE
T ss_pred             EeecCCeEEEEECCCCEEEEEeCCCCceEEEEECCCC----CcceEEeCC--C--CCEEEEEccCCCCeEEEEcCCCCCe
Confidence            5556788888887777899999876554443221111    123445552  1  2356655432  3477777643211


Q ss_pred             cCCCCCCCCcccCcccccccceEEE---CCEEEEEEcCCCeEEEEECCCCeEEEeecCCCCCCC-CceEEEECCeEEEEE
Q 012227          288 TRPGSMPSNIKLPVSLNFRSQAVSV---DGILYFMRSDPEGIVSYNMVTGVWKQFIIPTPLHLN-DHTLAECGGRIMLVG  363 (468)
Q Consensus       288 ~~~~~~p~~~~~~~~~~~~~~~v~~---~G~lY~~~~~~~~i~~fD~~~~~w~~i~~P~p~~~~-~~~l~~~~G~L~lv~  363 (468)
                      +.+..  ....       ...++.+   ++.|||.....+.|.+||+....-..+ ........ -..++..+|.||++.
T Consensus       156 ~~~~~--~~~~-------~P~gla~d~~~~~lY~~D~~~~~I~~~d~dg~~~~~~-~~~~~~~~~P~giav~~~~ly~~d  225 (316)
T 1ijq_A          156 YSLVT--ENIQ-------WPNGITLDLLSGRLYWVDSKLHSISSIDVNGGNRKTI-LEDEKRLAHPFSLAVFEDKVFWTD  225 (316)
T ss_dssp             EEEEC--SSCS-------CEEEEEEETTTTEEEEEETTTTEEEEEETTSCSCEEE-EECTTTTSSEEEEEEETTEEEEEE
T ss_pred             EEEEE--CCCC-------CceEEEEeccCCEEEEEECCCCeEEEEecCCCceEEE-eecCCccCCcEEEEEECCEEEEEE
Confidence            11100  0111       1234444   589999998778999999976443333 11111111 134566789999875


Q ss_pred             EEeeCCccEEEEEEEecCC
Q 012227          364 LLTKNAATCVCIWELQKMT  382 (468)
Q Consensus       364 ~~~~~~~~~i~Vw~ld~~~  382 (468)
                      ...    .  .|++++..+
T Consensus       226 ~~~----~--~V~~~~~~~  238 (316)
T 1ijq_A          226 IIN----E--AIFSANRLT  238 (316)
T ss_dssp             TTT----T--EEEEEETTT
T ss_pred             CCC----C--eEEEEeCCC
Confidence            321    2  566667543

>1q7f_A NHL, brain tumor CG10719-PA; BRAT, NHL domain, NHL repeat, beta-propeller, translation; 1.95A {Drosophila melanogaster} SCOP: b.68.9.1

Probab=89.37  E-value=11  Score=33.80  Aligned_cols=147  Identities=7%  Similarity=0.121  Sum_probs=80.4

Q ss_pred             ecCceEEEEEcCCceEEEEcCCCCceEecCCCCcCCcceeEEEEEEcCCCCCCCeEEEEEEe-cCcEEEEeCCCCCccCC
Q 012227          212 SAGGLVCFLDIGHRNFYVCNPLTQSFKELPARSVKVWSRVAVGMTLNGNSTSSGYKILWVGC-DGEYEIYDSLRNSWTRP  290 (468)
Q Consensus       212 s~~GLl~~~~~~~~~~~V~NP~T~~~~~LP~~~~~~~~~~~~~~~~d~~~~~~~ykVv~v~~-~~~v~vy~s~t~~W~~~  290 (468)
                      ..+|-+++.+.....+.++|+..+....+.... ..  ....++.+++     +.++++... ...+.+|+.....-..+
T Consensus       129 ~~~g~l~v~~~~~~~i~~~~~~g~~~~~~~~~~-~~--~~p~~i~~~~-----~g~l~v~~~~~~~i~~~~~~g~~~~~~  200 (286)
T 1q7f_A          129 DNKGRIIVVECKVMRVIIFDQNGNVLHKFGCSK-HL--EFPNGVVVND-----KQEIFISDNRAHCVKVFNYEGQYLRQI  200 (286)
T ss_dssp             CTTSCEEEEETTTTEEEEECTTSCEEEEEECTT-TC--SSEEEEEECS-----SSEEEEEEGGGTEEEEEETTCCEEEEE
T ss_pred             eCCCCEEEEECCCCEEEEEcCCCCEEEEeCCCC-cc--CCcEEEEECC-----CCCEEEEECCCCEEEEEcCCCCEEEEE
Confidence            346777777766678999998655555443211 11  1124455552     235665543 45699999754432222


Q ss_pred             CCCCCCcccCcccccccceEEE--CCEEEEEEcCCC-eEEEEECCCCeEEEeecCCCCCCCCceEEEE-CCeEEEEEEEe
Q 012227          291 GSMPSNIKLPVSLNFRSQAVSV--DGILYFMRSDPE-GIVSYNMVTGVWKQFIIPTPLHLNDHTLAEC-GGRIMLVGLLT  366 (468)
Q Consensus       291 ~~~p~~~~~~~~~~~~~~~v~~--~G~lY~~~~~~~-~i~~fD~~~~~w~~i~~P~p~~~~~~~l~~~-~G~L~lv~~~~  366 (468)
                      .. .....       ...++.+  +|.+|+...... .|..||...+....+....... ....++.. +|+|++..  .
T Consensus       201 ~~-~g~~~-------~p~~i~~d~~G~l~v~~~~~~~~i~~~~~~g~~~~~~~~~~~~~-~~~~i~~~~~g~l~vs~--~  269 (286)
T 1q7f_A          201 GG-EGITN-------YPIGVGINSNGEILIADNHNNFNLTIFTQDGQLISALESKVKHA-QCFDVALMDDGSVVLAS--K  269 (286)
T ss_dssp             SC-TTTSC-------SEEEEEECTTCCEEEEECSSSCEEEEECTTSCEEEEEEESSCCS-CEEEEEEETTTEEEEEE--T
T ss_pred             cc-CCccC-------CCcEEEECCCCCEEEEeCCCCEEEEEECCCCCEEEEEcccCCCC-cceeEEECCCCcEEEEC--C
Confidence            11 00000       1223444  688888876554 8999998776665553322111 11133333 78988763  1


Q ss_pred             eCCccEEEEEEEec
Q 012227          367 KNAATCVCIWELQK  380 (468)
Q Consensus       367 ~~~~~~i~Vw~ld~  380 (468)
                         ...+.||.+..
T Consensus       270 ---~~~v~v~~~~~  280 (286)
T 1q7f_A          270 ---DYRLYIYRYVQ  280 (286)
T ss_dssp             ---TTEEEEEECSC
T ss_pred             ---CCeEEEEEccc
Confidence               25788997654

>3scy_A Hypothetical bacterial 6-phosphogluconolactonase; 7-bladed beta-propeller, structural genomics, joint center F structural genomics, JCSG; HET: MSE; 1.50A {Bacteroides fragilis} PDB: 3fgb_A

Probab=89.25  E-value=14  Score=34.46  Aligned_cols=118  Identities=12%  Similarity=0.179  Sum_probs=66.0

Q ss_pred             CCE-EEEEEcCCCeEEEEECCCCeEEEee-cC-CCCCCCCc-eEEEE-CCeEEEEEEEeeCCccEEEEEEEecCCCCeEE
Q 012227          313 DGI-LYFMRSDPEGIVSYNMVTGVWKQFI-IP-TPLHLNDH-TLAEC-GGRIMLVGLLTKNAATCVCIWELQKMTLLWKE  387 (468)
Q Consensus       313 ~G~-lY~~~~~~~~i~~fD~~~~~w~~i~-~P-~p~~~~~~-~l~~~-~G~L~lv~~~~~~~~~~i~Vw~ld~~~~~W~~  387 (468)
                      +|+ +|+.......|..||+.++++..+. .+ .+...... .++.. +|+..++....  ....+.||.++..+++++.
T Consensus       221 dg~~l~v~~~~~~~v~v~~~~~g~~~~~~~~~~~~~~~~~~~~i~~spdg~~l~v~~~~--~~~~i~v~~~~~~~g~~~~  298 (361)
T 3scy_A          221 DGKFAYLINEIGGTVIAFRYADGMLDEIQTVAADTVNAQGSGDIHLSPDGKYLYASNRL--KADGVAIFKVDETNGTLTK  298 (361)
T ss_dssp             TSSEEEEEETTTCEEEEEEEETTEEEEEEEEESCSSCCCCEEEEEECTTSSEEEEEECS--SSCEEEEEEECTTTCCEEE
T ss_pred             CCCEEEEEcCCCCeEEEEEecCCceEEeEEEecCCCCCCCcccEEECCCCCEEEEECCC--CCCEEEEEEEcCCCCcEEE
Confidence            564 6777655678999999888775542 11 11111222 23322 67754443321  1357899999876678877


Q ss_pred             EEeeChhhhhcccCcceEEEEEe-cCCEEEEEeeeCCCCeEEE--EECCCCcEEEcc
Q 012227          388 VDRMPNIWCLDFYGKHVRMTCLG-NKGLLMLSLRSRQMNRLVT--YNVMSREWLKVP  441 (468)
Q Consensus       388 v~~mp~~~~~~~~~~~~~~~~~~-~~~~I~~~~~~~~~~~l~~--YD~~t~~w~~v~  441 (468)
                      +..++...   .    ..-.++. ++..||+...  ..+.+.+  +|+++++.+.+.
T Consensus       299 ~~~~~~g~---~----~~~~~~spdg~~l~~~~~--~~~~v~v~~~d~~~g~~~~~~  346 (361)
T 3scy_A          299 VGYQLTGI---H----PRNFIITPNGKYLLVACR--DTNVIQIFERDQATGLLTDIK  346 (361)
T ss_dssp             EEEEECSS---C----CCEEEECTTSCEEEEEET--TTTEEEEEEECTTTCCEEECS
T ss_pred             eeEecCCC---C----CceEEECCCCCEEEEEEC--CCCCEEEEEEECCCCcEeecc
Confidence            76665310   0    1122333 4555665432  2345555  688899988875

>1ri6_A Putative isomerase YBHE; 7-bladed propeller, enzyme, PSI, protein structure initiative, NEW YORK SGX research center for structural genomics; 2.00A {Escherichia coli} SCOP: b.69.11.1

Probab=89.04  E-value=6.7  Score=36.01  Aligned_cols=163  Identities=11%  Similarity=0.120  Sum_probs=80.9

Q ss_pred             eEEEEEcCCceEEEEcCCC-CceEecC--CCCcCCcceeEEEEEEcCCCCCCCeEEEEEE-ecCcEEEEeCC--CCCccC
Q 012227          216 LVCFLDIGHRNFYVCNPLT-QSFKELP--ARSVKVWSRVAVGMTLNGNSTSSGYKILWVG-CDGEYEIYDSL--RNSWTR  289 (468)
Q Consensus       216 Ll~~~~~~~~~~~V~NP~T-~~~~~LP--~~~~~~~~~~~~~~~~d~~~~~~~ykVv~v~-~~~~v~vy~s~--t~~W~~  289 (468)
                      .+++.......+.+||..+ ++...+.  ...... .....++.+++   .+ -.+++.+ .++.+.+|+..  ++.+..
T Consensus       142 ~l~~~~~~~~~v~~~d~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~p---dg-~~l~~~~~~~~~i~~~~~~~~~g~~~~  216 (343)
T 1ri6_A          142 TLWVPALKQDRICLFTVSDDGHLVAQDPAEVTTVE-GAGPRHMVFHP---NE-QYAYCVNELNSSVDVWELKDPHGNIEC  216 (343)
T ss_dssp             EEEEEEGGGTEEEEEEECTTSCEEEEEEEEEECST-TCCEEEEEECT---TS-SEEEEEETTTTEEEEEESSCTTSCCEE
T ss_pred             EEEEecCCCCEEEEEEecCCCceeeecccccccCC-CCCcceEEECC---CC-CEEEEEeCCCCEEEEEEecCCCCcEEE
Confidence            5555553445788998877 6554322  110100 01112344442   12 2344444 34569999984  444432


Q ss_pred             C---CCCCCCcccCcccccccceEEE--CC-EEEEEEcCCCeEEEEECC--CCeEEEee-cCCCCCCCCceEEEE-CCeE
Q 012227          290 P---GSMPSNIKLPVSLNFRSQAVSV--DG-ILYFMRSDPEGIVSYNMV--TGVWKQFI-IPTPLHLNDHTLAEC-GGRI  359 (468)
Q Consensus       290 ~---~~~p~~~~~~~~~~~~~~~v~~--~G-~lY~~~~~~~~i~~fD~~--~~~w~~i~-~P~p~~~~~~~l~~~-~G~L  359 (468)
                      .   ...+.....    ......+.+  +| .+|+.......|..||+.  ++++..+. ++...  .-..++.. +|+.
T Consensus       217 ~~~~~~~~~~~~~----~~~~~~i~~s~dg~~l~v~~~~~~~i~v~d~~~~~~~~~~~~~~~~~~--~~~~~~~s~dg~~  290 (343)
T 1ri6_A          217 VQTLDMMPENFSD----TRWAADIHITPDGRHLYACDRTASLITVFSVSEDGSVLSKEGFQPTET--QPRGFNVDHSGKY  290 (343)
T ss_dssp             EEEEECSCTTCCS----CCCEEEEEECTTSSEEEEEETTTTEEEEEEECTTSCCEEEEEEEECSS--SCCCEEECTTSSE
T ss_pred             EeeccccCccccc----cCCccceEECCCCCEEEEEecCCCEEEEEEEcCCCCceEEeeeecCCC--ccceEEECCCCCE
Confidence            2   111111000    001112333  35 566666556789999987  45555442 22211  11223332 5664


Q ss_pred             EEEEEEeeCCccEEEEEEEecCCCCeEEEEeeC
Q 012227          360 MLVGLLTKNAATCVCIWELQKMTLLWKEVDRMP  392 (468)
Q Consensus       360 ~lv~~~~~~~~~~i~Vw~ld~~~~~W~~v~~mp  392 (468)
                      .++..   .....+.||.++..+++++.+..++
T Consensus       291 l~~~~---~~~~~v~v~~~d~~~g~~~~~~~~~  320 (343)
T 1ri6_A          291 LIAAG---QKSHHISVYEIVGEQGLLHEKGRYA  320 (343)
T ss_dssp             EEEEC---TTTCEEEEEEEETTTTEEEEEEEEE
T ss_pred             EEEec---CCCCeEEEEEEcCCCceeeEccccc
Confidence            44432   2236889999998778888887665

>4gqb_B Methylosome protein 50; TIM barrel, beta-propeller, methyltransferase, methylation, transferase-protein binding complex; HET: 0XU; 2.06A {Homo sapiens}

Probab=89.03  E-value=15  Score=34.50  Aligned_cols=197  Identities=9%  Similarity=-0.037  Sum_probs=87.3

Q ss_pred             cCceEEEEEcCCceEEEEcCCCCceEecCCCC--cCCcceeEEEEEEcCCCCCCCeEEEEEEecCcEEEEeCCCCCccCC
Q 012227          213 AGGLVCFLDIGHRNFYVCNPLTQSFKELPARS--VKVWSRVAVGMTLNGNSTSSGYKILWVGCDGEYEIYDSLRNSWTRP  290 (468)
Q Consensus       213 ~~GLl~~~~~~~~~~~V~NP~T~~~~~LP~~~--~~~~~~~~~~~~~d~~~~~~~ykVv~v~~~~~v~vy~s~t~~W~~~  290 (468)
                      .++.++... ..+.+.|||..+++........  .+....  ..+.+.+    +.-.++..+.++.+.+||..++.=.. 
T Consensus        92 ~d~~l~~~s-~dg~v~lWd~~~~~~~~~~~~~~~~H~~~V--~~v~~sp----dg~~l~sgs~d~~i~iwd~~~~~~~~-  163 (344)
T 4gqb_B           92 GERGILVAS-DSGAVELWELDENETLIVSKFCKYEHDDIV--STVSVLS----SGTQAVSGSKDICIKVWDLAQQVVLS-  163 (344)
T ss_dssp             TTTEEEEEE-TTSEEEEEEECTTSSCEEEEEEEECCSSCE--EEEEECT----TSSEEEEEETTSCEEEEETTTTEEEE-
T ss_pred             CCCeEEEEE-CCCEEEEEeccCCCceeEeeccccCCCCCE--EEEEECC----CCCEEEEEeCCCeEEEEECCCCcEEE-
Confidence            345544333 3457999999887654322211  111112  2333331    11234444445679999987754211 


Q ss_pred             CCCCCCcccCcccccccceEEE--CC-EEEEEEcCCCeEEEEECCCCeEEEeecCCCCCCCCceEEEE---CCeEEEEEE
Q 012227          291 GSMPSNIKLPVSLNFRSQAVSV--DG-ILYFMRSDPEGIVSYNMVTGVWKQFIIPTPLHLNDHTLAEC---GGRIMLVGL  364 (468)
Q Consensus       291 ~~~p~~~~~~~~~~~~~~~v~~--~G-~lY~~~~~~~~i~~fD~~~~~w~~i~~P~p~~~~~~~l~~~---~G~L~lv~~  364 (468)
                       .+..+.       ..-..+.+  +| .+.+.+.....|..+|+.+.+-... +...........+..   ++++++.+.
T Consensus       164 -~~~~h~-------~~V~~~~~~~~~~~~l~s~s~D~~v~iwd~~~~~~~~~-~~~~~~~~~~~~~~~~p~~~~~l~sg~  234 (344)
T 4gqb_B          164 -SYRAHA-------AQVTCVAASPHKDSVFLSCSEDNRILLWDTRCPKPASQ-IGCSAPGYLPTSLAWHPQQSEVFVFGD  234 (344)
T ss_dssp             -EECCCS-------SCEEEEEECSSCTTEEEEEETTSCEEEEETTSSSCEEE-CC----CCCEEEEEECSSCTTEEEEEE
T ss_pred             -EEcCcC-------CceEEEEecCCCCCceeeeccccccccccccccceeee-eecceeeccceeeeecCCCCcceEEec
Confidence             111000       00112222  33 3444455556788999987654332 111111111112222   455655443


Q ss_pred             EeeCCccEEEEEEEecCCCCeEEEEeeChhhhhcccCcceEEEEEe-cCCEEEEEeeeCCCCeEEEEECCCCcEEEccC
Q 012227          365 LTKNAATCVCIWELQKMTLLWKEVDRMPNIWCLDFYGKHVRMTCLG-NKGLLMLSLRSRQMNRLVTYNVMSREWLKVPG  442 (468)
Q Consensus       365 ~~~~~~~~i~Vw~ld~~~~~W~~v~~mp~~~~~~~~~~~~~~~~~~-~~~~I~~~~~~~~~~~l~~YD~~t~~w~~v~~  442 (468)
                       .   ...+.||.+...+    .+..+..     ... .+.-.++. ++..+++. .+ ..+.+.+||..+++...+.+
T Consensus       235 -~---dg~v~~wd~~~~~----~~~~~~~-----h~~-~v~~v~fsp~g~~~las-gs-~D~~i~vwd~~~~~~~~~~~  297 (344)
T 4gqb_B          235 -E---NGTVSLVDTKSTS----CVLSSAV-----HSQ-CVTGLVFSPHSVPFLAS-LS-EDCSLAVLDSSLSELFRSQA  297 (344)
T ss_dssp             -T---TSEEEEEESCC------CCEEEEC-----CSS-CEEEEEECSSSSCCEEE-EE-TTSCEEEECTTCCEEEEECC
T ss_pred             -c---CCcEEEEECCCCc----EEEEEcC-----CCC-CEEEEEEccCCCeEEEE-Ee-CCCeEEEEECCCCcEEEEcC
Confidence             2   2578899554321    1111110     000 01111222 33333332 22 35678899999988766543

>4ery_A WD repeat-containing protein 5; WD40, WIN motif, beta propeller, 3-10 helix, lysine methyltransferase, RBBP5, ASH2L, core complex; 1.30A {Homo sapiens} PDB: 2h6k_A* 2h68_A* 2h6q_A* 3eg6_A 4erq_A 2h6n_A 4erz_A 4es0_A 4esg_A 4ewr_A 2gnq_A 2xl2_A 2xl3_A 3uvk_A* 3psl_A* 3uvl_A 3uvm_A 3uvn_A 3uvo_A 2h14_A ...

Probab=88.86  E-value=9.9  Score=34.66  Aligned_cols=141  Identities=11%  Similarity=0.134  Sum_probs=66.1

Q ss_pred             ceEEEEEcCCceEEEEcCCCCceEecCCCCcCCcceeEEEEEEcCCCCCCCeEEEEEEecCcEEEEeCCCCCccCCCCCC
Q 012227          215 GLVCFLDIGHRNFYVCNPLTQSFKELPARSVKVWSRVAVGMTLNGNSTSSGYKILWVGCDGEYEIYDSLRNSWTRPGSMP  294 (468)
Q Consensus       215 GLl~~~~~~~~~~~V~NP~T~~~~~LP~~~~~~~~~~~~~~~~d~~~~~~~ykVv~v~~~~~v~vy~s~t~~W~~~~~~p  294 (468)
                      |-+++.....+.+.+||..+++....-..  .....  ..+.+.+    ..-.++..+.++.+.+||..++.-..  .+.
T Consensus        35 ~~~l~s~~~dg~i~iw~~~~~~~~~~~~~--h~~~v--~~~~~~~----~~~~l~s~~~d~~i~vwd~~~~~~~~--~~~  104 (312)
T 4ery_A           35 GEWLASSSADKLIKIWGAYDGKFEKTISG--HKLGI--SDVAWSS----DSNLLVSASDDKTLKIWDVSSGKCLK--TLK  104 (312)
T ss_dssp             SSEEEEEETTSCEEEEETTTCCEEEEECC--CSSCE--EEEEECT----TSSEEEEEETTSEEEEEETTTCCEEE--EEE
T ss_pred             CCEEEEeeCCCeEEEEeCCCcccchhhcc--CCCce--EEEEEcC----CCCEEEEECCCCEEEEEECCCCcEEE--EEc
Confidence            33333333345688888887776543221  11112  2333331    12234444445679999987654211  000


Q ss_pred             CCcccCcccccccceEEE--CCEEEEEEcCCCeEEEEECCCCeEEEeecCCCCCCCCceEEEE--CCeEEEEEEEeeCCc
Q 012227          295 SNIKLPVSLNFRSQAVSV--DGILYFMRSDPEGIVSYNMVTGVWKQFIIPTPLHLNDHTLAEC--GGRIMLVGLLTKNAA  370 (468)
Q Consensus       295 ~~~~~~~~~~~~~~~v~~--~G~lY~~~~~~~~i~~fD~~~~~w~~i~~P~p~~~~~~~l~~~--~G~L~lv~~~~~~~~  370 (468)
                      ...       ..-..+.+  +|.+.+.+.....|..+|+.+.+.... ++.  +......+..  +|++++++..    .
T Consensus       105 ~~~-------~~v~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~-~~~--~~~~v~~~~~~~~~~~l~~~~~----d  170 (312)
T 4ery_A          105 GHS-------NYVFCCNFNPQSNLIVSGSFDESVRIWDVKTGKCLKT-LPA--HSDPVSAVHFNRDGSLIVSSSY----D  170 (312)
T ss_dssp             CCS-------SCEEEEEECSSSSEEEEEETTSCEEEEETTTCCEEEE-ECC--CSSCEEEEEECTTSSEEEEEET----T
T ss_pred             CCC-------CCEEEEEEcCCCCEEEEEeCCCcEEEEECCCCEEEEE-ecC--CCCcEEEEEEcCCCCEEEEEeC----C
Confidence            000       00011112  455445555556799999988764332 221  1111222222  5666655532    2


Q ss_pred             cEEEEEEEe
Q 012227          371 TCVCIWELQ  379 (468)
Q Consensus       371 ~~i~Vw~ld  379 (468)
                      ..+.+|.+.
T Consensus       171 ~~i~~wd~~  179 (312)
T 4ery_A          171 GLCRIWDTA  179 (312)
T ss_dssp             SCEEEEETT
T ss_pred             CcEEEEECC
Confidence            467888554

>4a2l_A BT_4663, two-component system sensor histidine kinase/RESP; transcription, beta-propeller; HET: PGE PG4 MES 2PE; 2.60A {Bacteroides thetaiotaomicron} PDB: 4a2m_A*

Probab=88.85  E-value=27  Score=37.08  Aligned_cols=204  Identities=15%  Similarity=0.246  Sum_probs=107.9

Q ss_pred             eecCceEEEEEcCCceEEEEcCCCCceEecCCCCc---CCcceeEEEEEEcCCCCCCCeEEEEEEec-CcEEEEeCCCCC
Q 012227          211 ASAGGLVCFLDIGHRNFYVCNPLTQSFKELPARSV---KVWSRVAVGMTLNGNSTSSGYKILWVGCD-GEYEIYDSLRNS  286 (468)
Q Consensus       211 ~s~~GLl~~~~~~~~~~~V~NP~T~~~~~LP~~~~---~~~~~~~~~~~~d~~~~~~~ykVv~v~~~-~~v~vy~s~t~~  286 (468)
                      .-.+|-|.+....  -+.++|+.++++..+...+.   .........+..|.     +.. ++++.. +++..|+..++.
T Consensus       270 ~d~~g~lWigt~~--Gl~~~~~~~~~~~~~~~~~~~~~~l~~~~i~~i~~D~-----~g~-lWigt~~~Gl~~~~~~~~~  341 (795)
T 4a2l_A          270 MDSQNRLWIGTFN--DLNIYHEGTDSFASYSSNPVENGSLSQRSVRSIFMDS-----QGG-MWLGTYFGGLNYYHPIRNR  341 (795)
T ss_dssp             ECTTSCEEEEESS--CEEEEETTTTEEEEECCCTTSTTSCSSSCEEEEEECT-----TSC-EEEEESSSCEEEECGGGGS
T ss_pred             EcCCCCEEEEeCC--hhheEcCCCCeEEEEecCCCCCCCCCCCcEEEEEEeC-----CcC-EEEEECCCCeEEeCCCccc
Confidence            3346766666543  58999999999887654211   11112233444552     122 455654 568999888777


Q ss_pred             ccCCCCCCCCcccCcccccccceEEE--CCEEEEEEcCCCeEEEEECCCCeEEEeecCC-----CCCCCC-ceEEEE-CC
Q 012227          287 WTRPGSMPSNIKLPVSLNFRSQAVSV--DGILYFMRSDPEGIVSYNMVTGVWKQFIIPT-----PLHLND-HTLAEC-GG  357 (468)
Q Consensus       287 W~~~~~~p~~~~~~~~~~~~~~~v~~--~G~lY~~~~~~~~i~~fD~~~~~w~~i~~P~-----p~~~~~-~~l~~~-~G  357 (468)
                      ++.....+....++.  . .-.+++.  +|.++ ++....+|..||..++.+..+..+.     ...... ..+.+- +|
T Consensus       342 ~~~~~~~~~~~~l~~--~-~V~~i~~d~~g~lW-iGt~~~Gl~~~~~~~~~~~~~~~~~~~~~~~l~~~~v~~i~~d~~g  417 (795)
T 4a2l_A          342 FKNIRNIPYKNSLSD--N-VVSCIVEDKDKNLW-IGTNDGGLNLYNPITQRFTSYTLQEDESARGIGSNNIKAVYVDEKK  417 (795)
T ss_dssp             SEEECCCTTSSSCSC--S-SEEEEEECTTSCEE-EEESSSCEEEECTTTCCEEEECCC------CCSCSCEEEEEEETTT
T ss_pred             ceEEcCCCCCCCCCC--C-eeEEEEECCCCCEE-EEECCCCeEEEcCCCCcEEEEecCCCCcccCCCCccEEEEEEcCCC
Confidence            654432211111100  0 1123333  45654 5555568999999999998763321     011111 233332 67


Q ss_pred             e-EEEEEEEeeCCccEEEEEEEecCCCCeEEEEeeChhhhhcccCcceEEEEEecCCEEEEEeeeCCCCeEEEEECCCCc
Q 012227          358 R-IMLVGLLTKNAATCVCIWELQKMTLLWKEVDRMPNIWCLDFYGKHVRMTCLGNKGLLMLSLRSRQMNRLVTYNVMSRE  436 (468)
Q Consensus       358 ~-L~lv~~~~~~~~~~i~Vw~ld~~~~~W~~v~~mp~~~~~~~~~~~~~~~~~~~~~~I~~~~~~~~~~~l~~YD~~t~~  436 (468)
                      + |++ +....      .++.++..++.+.........    .....+...+...+|.|++...    ..++.||+++++
T Consensus       418 ~~lWi-gt~~~------Gl~~~d~~~~~~~~~~~~~~~----l~~~~v~~i~~d~~g~lwigt~----~Gl~~~~~~~~~  482 (795)
T 4a2l_A          418 SLVYI-GTHAG------GLSILHRNSGQVENFNQRNSQ----LVNENVYAILPDGEGNLWLGTL----SALVRFNPEQRS  482 (795)
T ss_dssp             TEEEE-EETTT------EEEEEETTTCCEEEECTTTSC----CSCSCEEEEEECSSSCEEEEES----SCEEEEETTTTE
T ss_pred             CEEEE-EeCcC------ceeEEeCCCCcEEEeecCCCC----cCCCeeEEEEECCCCCEEEEec----CceeEEeCCCCe
Confidence            7 665 32211      466777766666654321110    1111111222334677877432    469999999999


Q ss_pred             EEEcc
Q 012227          437 WLKVP  441 (468)
Q Consensus       437 w~~v~  441 (468)
                      ++.+.
T Consensus       483 ~~~~~  487 (795)
T 4a2l_A          483 FTTIE  487 (795)
T ss_dssp             EEECC
T ss_pred             EEEcc
Confidence            98875

>4ery_A WD repeat-containing protein 5; WD40, WIN motif, beta propeller, 3-10 helix, lysine methyltransferase, RBBP5, ASH2L, core complex; 1.30A {Homo sapiens} PDB: 2h6k_A* 2h68_A* 2h6q_A* 3eg6_A 4erq_A 2h6n_A 4erz_A 4es0_A 4esg_A 4ewr_A 2gnq_A 2xl2_A 2xl3_A 3uvk_A* 3psl_A* 3uvl_A 3uvm_A 3uvn_A 3uvo_A 2h14_A ...

Probab=88.72  E-value=9.9  Score=34.66  Aligned_cols=192  Identities=14%  Similarity=0.138  Sum_probs=88.1

Q ss_pred             CceEEEEEcCCceEEEEcCCCCceEe-cCCCCcCCcceeEEEEEEcCCCCCCCeEEEEEEecCcEEEEeCCCCCccCCCC
Q 012227          214 GGLVCFLDIGHRNFYVCNPLTQSFKE-LPARSVKVWSRVAVGMTLNGNSTSSGYKILWVGCDGEYEIYDSLRNSWTRPGS  292 (468)
Q Consensus       214 ~GLl~~~~~~~~~~~V~NP~T~~~~~-LP~~~~~~~~~~~~~~~~d~~~~~~~ykVv~v~~~~~v~vy~s~t~~W~~~~~  292 (468)
                      +|-+++.......+.+||..+++... +..   ...  ....+.+.+    ..-.++..+.++.+.+||..++.-..  .
T Consensus        76 ~~~~l~s~~~d~~i~vwd~~~~~~~~~~~~---~~~--~v~~~~~~~----~~~~l~s~~~d~~i~iwd~~~~~~~~--~  144 (312)
T 4ery_A           76 DSNLLVSASDDKTLKIWDVSSGKCLKTLKG---HSN--YVFCCNFNP----QSNLIVSGSFDESVRIWDVKTGKCLK--T  144 (312)
T ss_dssp             TSSEEEEEETTSEEEEEETTTCCEEEEEEC---CSS--CEEEEEECS----SSSEEEEEETTSCEEEEETTTCCEEE--E
T ss_pred             CCCEEEEECCCCEEEEEECCCCcEEEEEcC---CCC--CEEEEEEcC----CCCEEEEEeCCCcEEEEECCCCEEEE--E
Confidence            44444444445678899988776442 221   111  122333331    12234444446679999987654211  1


Q ss_pred             CCCCcccCcccccccceEEE--CCEEEEEEcCCCeEEEEECCCCeEEEeecCCCCCCCCceEEEE--CCeEEEEEEEeeC
Q 012227          293 MPSNIKLPVSLNFRSQAVSV--DGILYFMRSDPEGIVSYNMVTGVWKQFIIPTPLHLNDHTLAEC--GGRIMLVGLLTKN  368 (468)
Q Consensus       293 ~p~~~~~~~~~~~~~~~v~~--~G~lY~~~~~~~~i~~fD~~~~~w~~i~~P~p~~~~~~~l~~~--~G~L~lv~~~~~~  368 (468)
                      +.... .      .-..+.+  +|.+.+.+.....|..||+.+.+.... +... .......+.+  +|+.++++..   
T Consensus       145 ~~~~~-~------~v~~~~~~~~~~~l~~~~~d~~i~~wd~~~~~~~~~-~~~~-~~~~~~~~~~~~~~~~l~~~~~---  212 (312)
T 4ery_A          145 LPAHS-D------PVSAVHFNRDGSLIVSSSYDGLCRIWDTASGQCLKT-LIDD-DNPPVSFVKFSPNGKYILAATL---  212 (312)
T ss_dssp             ECCCS-S------CEEEEEECTTSSEEEEEETTSCEEEEETTTCCEEEE-ECCS-SCCCEEEEEECTTSSEEEEEET---
T ss_pred             ecCCC-C------cEEEEEEcCCCCEEEEEeCCCcEEEEECCCCceeeE-Eecc-CCCceEEEEECCCCCEEEEEcC---
Confidence            11100 0      0112222  566556665666899999988764332 1111 1111122222  5665554432   


Q ss_pred             CccEEEEEEEecCCCCeEEEEeeChhhhhcccCcceEEEEEecCCEEEEEeeeCCCCeEEEEECCCCcEE
Q 012227          369 AATCVCIWELQKMTLLWKEVDRMPNIWCLDFYGKHVRMTCLGNKGLLMLSLRSRQMNRLVTYNVMSREWL  438 (468)
Q Consensus       369 ~~~~i~Vw~ld~~~~~W~~v~~mp~~~~~~~~~~~~~~~~~~~~~~I~~~~~~~~~~~l~~YD~~t~~w~  438 (468)
                       ...+.+|.+...    +.+..+...... ..  .........++..++.  +...+.+.+||+++++..
T Consensus       213 -d~~i~iwd~~~~----~~~~~~~~~~~~-~~--~~~~~~~~~~~~~l~s--g~~dg~i~vwd~~~~~~~  272 (312)
T 4ery_A          213 -DNTLKLWDYSKG----KCLKTYTGHKNE-KY--CIFANFSVTGGKWIVS--GSEDNLVYIWNLQTKEIV  272 (312)
T ss_dssp             -TTEEEEEETTTT----EEEEEECSSCCS-SS--CCCEEEECSSSCEEEE--CCTTSCEEEEETTTCCEE
T ss_pred             -CCeEEEEECCCC----cEEEEEEecCCc-eE--EEEEEEEeCCCcEEEE--ECCCCEEEEEECCCchhh
Confidence             257888865432    222222110000 00  0011112223443332  234568999999888654

>3jro_A Fusion protein of protein transport protein SEC13 nucleoporin NUP145; protein complex, cytoplasmic vesicle, endoplasmic reticulum, transport, membrane, mRNA transport; 4.00A {Saccharomyces cerevisiae}

Probab=88.64  E-value=1.9  Score=45.91  Aligned_cols=205  Identities=10%  Similarity=0.052  Sum_probs=93.4

Q ss_pred             ceEEEEEcCCceEEEEcCCCCceEecCCCCcCCcceeEEEEEEcCCCCCCCeEEEEEEecCcEEEEeCCCCCccCCCCCC
Q 012227          215 GLVCFLDIGHRNFYVCNPLTQSFKELPARSVKVWSRVAVGMTLNGNSTSSGYKILWVGCDGEYEIYDSLRNSWTRPGSMP  294 (468)
Q Consensus       215 GLl~~~~~~~~~~~V~NP~T~~~~~LP~~~~~~~~~~~~~~~~d~~~~~~~ykVv~v~~~~~v~vy~s~t~~W~~~~~~p  294 (468)
                      |-+++.....+.+.+||..++++..+-.........  ..+.+.  +....-.++..+.++.+.+||..++.-.......
T Consensus        67 ~~~l~s~s~Dg~I~vwd~~~~~~~~~~~~~~h~~~V--~~v~~s--p~~~~~~l~sgs~dg~I~vwdl~~~~~~~~~~~~  142 (753)
T 3jro_A           67 GTILASCSYDGKVLIWKEENGRWSQIAVHAVHSASV--NSVQWA--PHEYGPLLLVASSDGKVSVVEFKENGTTSPIIID  142 (753)
T ss_dssp             CSEEEEEETTSCEEEEEEETTEEEEEEEECCCSSCE--EEEEEC--CGGGCSEEEEEETTSEEEEEECCSSSCCCCEEEE
T ss_pred             CCEEEEEeCCCeEEEEECCCCcccccccccCCCCCe--EEEEEC--CCCCCCEEEEEeCCCcEEEEEeecCCCcceeEee
Confidence            544555545568999999988754443322222222  233333  2111234444455667999998766321111000


Q ss_pred             CCcccCcccccccceEEE---------------CCEEEEEEcCCCeEEEEECCCC--eEEEeecCCCCCCCCceEEEE--
Q 012227          295 SNIKLPVSLNFRSQAVSV---------------DGILYFMRSDPEGIVSYNMVTG--VWKQFIIPTPLHLNDHTLAEC--  355 (468)
Q Consensus       295 ~~~~~~~~~~~~~~~v~~---------------~G~lY~~~~~~~~i~~fD~~~~--~w~~i~~P~p~~~~~~~l~~~--  355 (468)
                      ..   +.    ....+.+               +|.+.+.+...+.|..||+.+.  .+..+. ....+.....-+.+  
T Consensus       143 ~~---~~----~v~~l~~~p~~~~~~~~~~~~~d~~~l~sgs~dg~I~iwd~~~~~~~~~~~~-~~~~h~~~V~~l~~sp  214 (753)
T 3jro_A          143 AH---AI----GVNSASWAPATIEEDGEHNGTKESRKFVTGGADNLVKIWKYNSDAQTYVLES-TLEGHSDWVRDVAWSP  214 (753)
T ss_dssp             CC---SS----CEEEEEECCCC---------CGGGCCEEEEETTSCEEEEEEETTTTEEEEEE-EECCCSSCEEEEEECC
T ss_pred             cC---CC----ceEEEEecCcccccccccccCCCCCEEEEEECCCeEEEEeccCCcccceeee-eecCCCCcEEEEEecc
Confidence            00   00    0111111               3455555555567888888654  333321 11112222222333  


Q ss_pred             C---CeEEEEEEEeeCCccEEEEEEEecCCCCeEEEEeeChhhhhcccCcceEEEEEecCCEEEEEeeeCCCCeEEEEEC
Q 012227          356 G---GRIMLVGLLTKNAATCVCIWELQKMTLLWKEVDRMPNIWCLDFYGKHVRMTCLGNKGLLMLSLRSRQMNRLVTYNV  432 (468)
Q Consensus       356 ~---G~L~lv~~~~~~~~~~i~Vw~ld~~~~~W~~v~~mp~~~~~~~~~~~~~~~~~~~~~~I~~~~~~~~~~~l~~YD~  432 (468)
                      +   |++.+.+..    ...+.||.+......+.......    ....+. +.-.++..++..++..  ...+.+.+||+
T Consensus       215 ~~~~~~~l~s~s~----Dg~I~iwd~~~~~~~~~~~~~~~----~~~~~~-v~~l~~spdg~~l~s~--s~Dg~I~vwd~  283 (753)
T 3jro_A          215 TVLLRSYLASVSQ----DRTCIIWTQDNEQGPWKKTLLKE----EKFPDV-LWRASWSLSGNVLALS--GGDNKVTLWKE  283 (753)
T ss_dssp             CCSSSEEEEEEES----SSCEEEEEESSSSSCCBCCBSSS----SCCSSC-CCCEEECTTTCCEEEE--CSSSCEECCBC
T ss_pred             CCCCCCEEEEEec----CCEEEEecCCCCCCcceeEEecc----CCCCCc-eEEEEEcCCCCEEEEE--cCCCEEEEEec
Confidence            3   666665542    24789998876543332211000    000000 1112233233333322  23567899998


Q ss_pred             CC-CcEEEccC
Q 012227          433 MS-REWLKVPG  442 (468)
Q Consensus       433 ~t-~~w~~v~~  442 (468)
                      .+ ++|..+..
T Consensus       284 ~~~~~~~~~~~  294 (753)
T 3jro_A          284 NLEGKWEPAGE  294 (753)
T ss_dssp             CSSSCCBCCCC
T ss_pred             CCCCCcccccc
Confidence            84 45655543

>1p22_A F-BOX/WD-repeat protein 1A; ubiquitination, degradation, signaling protein; HET: SEP; 2.95A {Homo sapiens} SCOP: a.158.1.1 b.69.4.1

Probab=88.61  E-value=9.3  Score=37.00  Aligned_cols=142  Identities=11%  Similarity=0.123  Sum_probs=73.9

Q ss_pred             CceEEEEEcCCceEEEEcCCCCceEecCCCCcCCcceeEEEEEEcCCCCCCCeEEEEEEecCcEEEEeCCCCCccCC-CC
Q 012227          214 GGLVCFLDIGHRNFYVCNPLTQSFKELPARSVKVWSRVAVGMTLNGNSTSSGYKILWVGCDGEYEIYDSLRNSWTRP-GS  292 (468)
Q Consensus       214 ~GLl~~~~~~~~~~~V~NP~T~~~~~LP~~~~~~~~~~~~~~~~d~~~~~~~ykVv~v~~~~~v~vy~s~t~~W~~~-~~  292 (468)
                      +|-+++.+...+.+.+||..+++....-..  ..  .....+.+++      -.++..+.++.+.+||..++.-... ..
T Consensus       182 ~~~~l~sg~~dg~i~vwd~~~~~~~~~~~~--h~--~~v~~l~~~~------~~l~s~s~dg~i~vwd~~~~~~~~~~~~  251 (435)
T 1p22_A          182 DERVIITGSSDSTVRVWDVNTGEMLNTLIH--HC--EAVLHLRFNN------GMMVTCSKDRSIAVWDMASPTDITLRRV  251 (435)
T ss_dssp             CSSEEEEEETTSCEEEEESSSCCEEEEECC--CC--SCEEEEECCT------TEEEEEETTSCEEEEECSSSSCCEEEEE
T ss_pred             CCCEEEEEcCCCeEEEEECCCCcEEEEEcC--CC--CcEEEEEEcC------CEEEEeeCCCcEEEEeCCCCCCceeeeE
Confidence            454445555556899999998875432211  11  1123333331      2455445566799999876542110 00


Q ss_pred             CCCCcccCcccccccceEEECCEEEEEEcCCCeEEEEECCCCeEEEeecCCCCCCCCceEEEECCeEEEEEEEeeCCccE
Q 012227          293 MPSNIKLPVSLNFRSQAVSVDGILYFMRSDPEGIVSYNMVTGVWKQFIIPTPLHLNDHTLAECGGRIMLVGLLTKNAATC  372 (468)
Q Consensus       293 ~p~~~~~~~~~~~~~~~v~~~G~lY~~~~~~~~i~~fD~~~~~w~~i~~P~p~~~~~~~l~~~~G~L~lv~~~~~~~~~~  372 (468)
                      ....       ......+..+|...+.+.....|..+|+.+.+.... +..  +......+..+|.+++++..    ...
T Consensus       252 ~~~~-------~~~v~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~-~~~--~~~~v~~~~~~~~~l~~g~~----dg~  317 (435)
T 1p22_A          252 LVGH-------RAAVNVVDFDDKYIVSASGDRTIKVWNTSTCEFVRT-LNG--HKRGIACLQYRDRLVVSGSS----DNT  317 (435)
T ss_dssp             ECCC-------SSCEEEEEEETTEEEEEETTSEEEEEETTTCCEEEE-EEC--CSSCEEEEEEETTEEEEEET----TSC
T ss_pred             ecCC-------CCcEEEEEeCCCEEEEEeCCCeEEEEECCcCcEEEE-EcC--CCCcEEEEEeCCCEEEEEeC----CCe
Confidence            0000       001223444666666666667899999988765432 211  11222334456776665542    247


Q ss_pred             EEEEEEe
Q 012227          373 VCIWELQ  379 (468)
Q Consensus       373 i~Vw~ld  379 (468)
                      +.+|.+.
T Consensus       318 i~iwd~~  324 (435)
T 1p22_A          318 IRLWDIE  324 (435)
T ss_dssp             EEEEETT
T ss_pred             EEEEECC
Confidence            8889554

>3fm0_A Protein CIAO1; WDR39,SGC,WD40,CIAO1, nucleus, WD repeat, biosynthetic prote structural genomics, structural genomics consortium; 1.70A {Homo sapiens}

Probab=88.53  E-value=11  Score=35.16  Aligned_cols=158  Identities=9%  Similarity=0.072  Sum_probs=74.6

Q ss_pred             CceEEEEEcCCceEEEEcCCCCceEecCCC-CcCCcceeEEEEEEcCCCCCCCeEEEEEEecCcEEEEeCCCCCccCCCC
Q 012227          214 GGLVCFLDIGHRNFYVCNPLTQSFKELPAR-SVKVWSRVAVGMTLNGNSTSSGYKILWVGCDGEYEIYDSLRNSWTRPGS  292 (468)
Q Consensus       214 ~GLl~~~~~~~~~~~V~NP~T~~~~~LP~~-~~~~~~~~~~~~~~d~~~~~~~ykVv~v~~~~~v~vy~s~t~~W~~~~~  292 (468)
                      +|-+++.......+.|||..++++...... ..+....  ..+.+.+    ..-.++..+.++.+.+|+..++.+..+..
T Consensus        27 ~g~~las~~~D~~i~iw~~~~~~~~~~~~~~~~h~~~v--~~~~~sp----~g~~l~s~s~D~~v~iw~~~~~~~~~~~~  100 (345)
T 3fm0_A           27 AGTLLASCGGDRRIRIWGTEGDSWICKSVLSEGHQRTV--RKVAWSP----CGNYLASASFDATTCIWKKNQDDFECVTT  100 (345)
T ss_dssp             TSSCEEEEETTSCEEEEEEETTEEEEEEEECSSCSSCE--EEEEECT----TSSEEEEEETTSCEEEEEECCC-EEEEEE
T ss_pred             CCCEEEEEcCCCeEEEEEcCCCcceeeeeeccccCCcE--EEEEECC----CCCEEEEEECCCcEEEEEccCCCeEEEEE
Confidence            444444444455788888887765422111 1111122  2333331    12234444446679999987766543322


Q ss_pred             CCCCcccCcccccccceEEE--CCEEEEEEcCCCeEEEEECCCC-eEEEeecCCCCCCCCceEEEE--CCeEEEEEEEee
Q 012227          293 MPSNIKLPVSLNFRSQAVSV--DGILYFMRSDPEGIVSYNMVTG-VWKQFIIPTPLHLNDHTLAEC--GGRIMLVGLLTK  367 (468)
Q Consensus       293 ~p~~~~~~~~~~~~~~~v~~--~G~lY~~~~~~~~i~~fD~~~~-~w~~i~~P~p~~~~~~~l~~~--~G~L~lv~~~~~  367 (468)
                      +.....       .-..+.+  +|.+.+.++....|..+|+.++ ....+.. ...+.....-+..  +|++++.+..  
T Consensus       101 ~~~h~~-------~v~~v~~sp~~~~l~s~s~D~~v~iwd~~~~~~~~~~~~-~~~h~~~v~~~~~~p~~~~l~s~s~--  170 (345)
T 3fm0_A          101 LEGHEN-------EVKSVAWAPSGNLLATCSRDKSVWVWEVDEEDEYECVSV-LNSHTQDVKHVVWHPSQELLASASY--  170 (345)
T ss_dssp             ECCCSS-------CEEEEEECTTSSEEEEEETTSCEEEEEECTTSCEEEEEE-ECCCCSCEEEEEECSSSSCEEEEET--
T ss_pred             ccCCCC-------CceEEEEeCCCCEEEEEECCCeEEEEECCCCCCeEEEEE-ecCcCCCeEEEEECCCCCEEEEEeC--
Confidence            111100       0112222  4665555655667888998764 2332211 1111111222222  5665554432  


Q ss_pred             CCccEEEEEEEecCCCCeEEEEee
Q 012227          368 NAATCVCIWELQKMTLLWKEVDRM  391 (468)
Q Consensus       368 ~~~~~i~Vw~ld~~~~~W~~v~~m  391 (468)
                        ...+.+|.++.  ..|..+..+
T Consensus       171 --d~~i~~w~~~~--~~~~~~~~~  190 (345)
T 3fm0_A          171 --DDTVKLYREEE--DDWVCCATL  190 (345)
T ss_dssp             --TSCEEEEEEET--TEEEEEEEE
T ss_pred             --CCcEEEEEecC--CCEEEEEEe
Confidence              24688997664  566655444

>4aez_A CDC20, WD repeat-containing protein SLP1; cell cycle, KEN-BOX, D-BOX, APC/C; 2.30A {Schizosaccharomyces pombe}

Probab=88.34  E-value=18  Score=34.47  Aligned_cols=193  Identities=11%  Similarity=0.043  Sum_probs=89.4

Q ss_pred             CceEEEEEcCCceEEEEcCCCCceEecCCCCcCCcceeEEEEEEcCCCCCCCeEEEEEEecCcEEEEeCCCCCccCCCCC
Q 012227          214 GGLVCFLDIGHRNFYVCNPLTQSFKELPARSVKVWSRVAVGMTLNGNSTSSGYKILWVGCDGEYEIYDSLRNSWTRPGSM  293 (468)
Q Consensus       214 ~GLl~~~~~~~~~~~V~NP~T~~~~~LP~~~~~~~~~~~~~~~~d~~~~~~~ykVv~v~~~~~v~vy~s~t~~W~~~~~~  293 (468)
                      +|-+++.......+.+||..+++....-..  .....  ..+.+++      ..++..+.++.+.+||..+..-... .+
T Consensus       145 ~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~--~~~~v--~~~~~~~------~~l~~~~~dg~i~i~d~~~~~~~~~-~~  213 (401)
T 4aez_A          145 DGSFLSVGLGNGLVDIYDVESQTKLRTMAG--HQARV--GCLSWNR------HVLSSGSRSGAIHHHDVRIANHQIG-TL  213 (401)
T ss_dssp             TSSEEEEEETTSCEEEEETTTCCEEEEECC--CSSCE--EEEEEET------TEEEEEETTSEEEEEETTSSSCEEE-EE
T ss_pred             CCCEEEEECCCCeEEEEECcCCeEEEEecC--CCCce--EEEEECC------CEEEEEcCCCCEEEEecccCcceee-EE
Confidence            554444444456799999988765432211  11111  2233342      2444444566799999874321100 00


Q ss_pred             CCCcccCcccccccceEEE--CCEEEEEEcCCCeEEEEECCCCeEEEeecCCCCCCCCceEEEE--CCeEEEEEEEeeCC
Q 012227          294 PSNIKLPVSLNFRSQAVSV--DGILYFMRSDPEGIVSYNMVTGVWKQFIIPTPLHLNDHTLAEC--GGRIMLVGLLTKNA  369 (468)
Q Consensus       294 p~~~~~~~~~~~~~~~v~~--~G~lY~~~~~~~~i~~fD~~~~~w~~i~~P~p~~~~~~~l~~~--~G~L~lv~~~~~~~  369 (468)
                      ...       ...-.++.+  +|.+.+.+.....|..||+.+..-... +... ...-..+...  ++.|++.+.  ...
T Consensus       214 ~~~-------~~~v~~~~~~~~~~~l~s~~~d~~v~iwd~~~~~~~~~-~~~~-~~~v~~~~~~p~~~~ll~~~~--gs~  282 (401)
T 4aez_A          214 QGH-------SSEVCGLAWRSDGLQLASGGNDNVVQIWDARSSIPKFT-KTNH-NAAVKAVAWCPWQSNLLATGG--GTM  282 (401)
T ss_dssp             ECC-------SSCEEEEEECTTSSEEEEEETTSCEEEEETTCSSEEEE-ECCC-SSCCCEEEECTTSTTEEEEEC--CTT
T ss_pred             cCC-------CCCeeEEEEcCCCCEEEEEeCCCeEEEccCCCCCccEE-ecCC-cceEEEEEECCCCCCEEEEec--CCC
Confidence            000       001112222  566666666667899999988654432 2111 1111223332  334544432  012


Q ss_pred             ccEEEEEEEecCCCCeEEEEeeChhhhhcccCcceEEEEEe-cCCEEEEEeeeCCCCeEEEEECCCCcEEEc
Q 012227          370 ATCVCIWELQKMTLLWKEVDRMPNIWCLDFYGKHVRMTCLG-NKGLLMLSLRSRQMNRLVTYNVMSREWLKV  440 (468)
Q Consensus       370 ~~~i~Vw~ld~~~~~W~~v~~mp~~~~~~~~~~~~~~~~~~-~~~~I~~~~~~~~~~~l~~YD~~t~~w~~v  440 (468)
                      ...+.+|.+..  .+  .+..+...       ....-.++. .+..++. ..+...+.+.+||+.+++...+
T Consensus       283 d~~i~i~d~~~--~~--~~~~~~~~-------~~v~~~~~s~~~~~l~~-~~g~~dg~i~v~~~~~~~~~~~  342 (401)
T 4aez_A          283 DKQIHFWNAAT--GA--RVNTVDAG-------SQVTSLIWSPHSKEIMS-THGFPDNNLSIWSYSSSGLTKQ  342 (401)
T ss_dssp             TCEEEEEETTT--CC--EEEEEECS-------SCEEEEEECSSSSEEEE-EECTTTCEEEEEEEETTEEEEE
T ss_pred             CCEEEEEECCC--CC--EEEEEeCC-------CcEEEEEECCCCCeEEE-EeecCCCcEEEEecCCccceeE
Confidence            35788885543  22  22222110       001112222 3444433 2233457888999888766654

>3fvz_A Peptidyl-glycine alpha-amidating monooxygenase; beta propeller, lyase, peptide amidation, HG-MAD, Zn-MAD, CL PAIR of basic residues; 2.35A {Rattus norvegicus} PDB: 3fw0_A*

Probab=88.31  E-value=13  Score=34.51  Aligned_cols=163  Identities=14%  Similarity=0.137  Sum_probs=77.6

Q ss_pred             eeecCceEEEEEc-CCceEEEEcCCCCceEecCCCCc-----CCcceeEEEEEEcCCCCCCCeEEEEEEe-cCcEEEEeC
Q 012227          210 VASAGGLVCFLDI-GHRNFYVCNPLTQSFKELPARSV-----KVWSRVAVGMTLNGNSTSSGYKILWVGC-DGEYEIYDS  282 (468)
Q Consensus       210 ~~s~~GLl~~~~~-~~~~~~V~NP~T~~~~~LP~~~~-----~~~~~~~~~~~~d~~~~~~~ykVv~v~~-~~~v~vy~s  282 (468)
                      +...+|.+++.+. ...++.++|+.......+.....     ........++.+++    ....+++... ...+.+|+.
T Consensus       150 ~~~~~g~lyv~d~~~~~~I~~~~~~g~~~~~~~~~g~~~~~~~~~~~~p~gia~d~----~~g~l~v~d~~~~~I~~~~~  225 (329)
T 3fvz_A          150 VEPSTGAVFVSDGYCNSRIVQFSPSGKFVTQWGEESSGSSPRPGQFSVPHSLALVP----HLDQLCVADRENGRIQCFKT  225 (329)
T ss_dssp             ECTTTCCEEEEECSSCCEEEEECTTSCEEEEECEECCSSSCCTTEESCEEEEEEET----TTTEEEEEETTTTEEEEEET
T ss_pred             EeCCCCeEEEEeCCCCCeEEEEcCCCCEEEEeccCCCCCCCCCcccCCCcEEEEEC----CCCEEEEEECCCCEEEEEEC
Confidence            3334788888885 56789999965443333432110     00111234555552    1135665553 345999998


Q ss_pred             CCCCccCCCCCCCCcccCcccccc-cceEEECCEEEEEEcCCCeEEEEECCCCeEEEeecCCCCCCCCc-eEEE-ECCeE
Q 012227          283 LRNSWTRPGSMPSNIKLPVSLNFR-SQAVSVDGILYFMRSDPEGIVSYNMVTGVWKQFIIPTPLHLNDH-TLAE-CGGRI  359 (468)
Q Consensus       283 ~t~~W~~~~~~p~~~~~~~~~~~~-~~~v~~~G~lY~~~~~~~~i~~fD~~~~~w~~i~~P~p~~~~~~-~l~~-~~G~L  359 (468)
                      .+++....-..+.....+....+. ...+..+|.+|+.......|..+|..+++....--+.......+ .++. -+|.|
T Consensus       226 ~~G~~~~~~~~~~~~~~~~~~~~~pg~~~~~~g~~~v~~~~~~~v~~~~~~~g~~~~~~~~~~~~~~~p~~ia~~~dG~l  305 (329)
T 3fvz_A          226 DTKEFVREIKHASFGRNVFAISYIPGFLFAVNGKPYFGDQEPVQGFVMNFSSGEIIDVFKPVRKHFDMPHDIVASEDGTV  305 (329)
T ss_dssp             TTCCEEEEECCTTTTTCEEEEEEETTEEEEEECCCCTTCSCCCCEEEEETTTCCEEEEECCSSSCCSSEEEEEECTTSEE
T ss_pred             CCCcEEEEEeccccCCCcceeeecCCEEEEeCCCEEeccCCCcEEEEEEcCCCeEEEEEcCCCCccCCeeEEEECCCCCE
Confidence            866653221111000001100000 11111233333332334578999988887665422222222222 2333 27788


Q ss_pred             EEEEEEeeCCccEEEEEEEec
Q 012227          360 MLVGLLTKNAATCVCIWELQK  380 (468)
Q Consensus       360 ~lv~~~~~~~~~~i~Vw~ld~  380 (468)
                      |+....    ...|.+|.++.
T Consensus       306 yvad~~----~~~I~~~~~~~  322 (329)
T 3fvz_A          306 YIGDAH----TNTVWKFTLTE  322 (329)
T ss_dssp             EEEESS----SCCEEEEEEEE
T ss_pred             EEEECC----CCEEEEEeCCc
Confidence            876532    24666676654

>1k8k_C P40, ARP2/3 complex 41 kDa subunit, P41-ARC; beta-propeller, structural protein; 2.00A {Bos taurus} SCOP: b.69.4.1 PDB: 1tyq_C* 1u2v_C* 2p9i_C* 2p9k_C* 2p9l_C 2p9n_C* 2p9p_C* 2p9s_C* 2p9u_C* 3rse_C 3dxm_C* 3dxk_C

Probab=87.96  E-value=17  Score=33.72  Aligned_cols=73  Identities=7%  Similarity=-0.026  Sum_probs=41.2

Q ss_pred             CCEEEEEEcCCCeEEEEECCCCeEEEeecCCCCCCCCceEEE-ECCeEEEEEEEeeCCccEEEEEEEecCCCCeEEEEee
Q 012227          313 DGILYFMRSDPEGIVSYNMVTGVWKQFIIPTPLHLNDHTLAE-CGGRIMLVGLLTKNAATCVCIWELQKMTLLWKEVDRM  391 (468)
Q Consensus       313 ~G~lY~~~~~~~~i~~fD~~~~~w~~i~~P~p~~~~~~~l~~-~~G~L~lv~~~~~~~~~~i~Vw~ld~~~~~W~~v~~m  391 (468)
                      +|...+.+.....|..||+.+.+.... +.... ..-..+.- -+|++++++  .   ...+.+|.++...+.|..+..+
T Consensus       213 ~~~~l~~~~~d~~i~i~d~~~~~~~~~-~~~~~-~~v~~~~~~~~~~~l~~~--~---d~~i~i~~~~~~~~~~~~~~~~  285 (372)
T 1k8k_C          213 NGSRVAWVSHDSTVCLADADKKMAVAT-LASET-LPLLAVTFITESSLVAAG--H---DCFPVLFTYDSAAGKLSFGGRL  285 (372)
T ss_dssp             SSSEEEEEETTTEEEEEEGGGTTEEEE-EECSS-CCEEEEEEEETTEEEEEE--T---TSSCEEEEEETTTTEEEECCCC
T ss_pred             CCCEEEEEeCCCEEEEEECCCCceeEE-EccCC-CCeEEEEEecCCCEEEEE--e---CCeEEEEEccCcCceEEEeecc
Confidence            555555555556899999977654332 21111 01112222 377766544  2   2467899888755778776555


Q ss_pred             C
Q 012227          392 P  392 (468)
Q Consensus       392 p  392 (468)
                      .
T Consensus       286 ~  286 (372)
T 1k8k_C          286 D  286 (372)
T ss_dssp             C
T ss_pred             C
Confidence            3

>4g56_B MGC81050 protein; protein arginine methyltransferase, protein complexes, histo methylation, transferase; HET: SAH; 2.95A {Xenopus laevis}

Probab=87.89  E-value=14  Score=34.87  Aligned_cols=197  Identities=7%  Similarity=-0.025  Sum_probs=81.1

Q ss_pred             cCceEEEEEcCCceEEEEcCCCCceEecCCCCcCCcceeEEEEEEcCCCCCCCeEEEEEEecCcEEEEeCCCCCccCCCC
Q 012227          213 AGGLVCFLDIGHRNFYVCNPLTQSFKELPARSVKVWSRVAVGMTLNGNSTSSGYKILWVGCDGEYEIYDSLRNSWTRPGS  292 (468)
Q Consensus       213 ~~GLl~~~~~~~~~~~V~NP~T~~~~~LP~~~~~~~~~~~~~~~~d~~~~~~~ykVv~v~~~~~v~vy~s~t~~W~~~~~  292 (468)
                      .+|.++.... ...+.|||..+++..................+.+.+    +.-.++..+.++.+.+||..++.-...  
T Consensus       104 ~d~~~l~~s~-dg~v~lWd~~~~~~~~~~~~~~~~h~~~V~~v~~sp----dg~~l~sgs~dg~v~iwd~~~~~~~~~--  176 (357)
T 4g56_B          104 SEKGILVASD-SGAVELWEILEKESLLVNKFAKYEHDDIVKTLSVFS----DGTQAVSGGKDFSVKVWDLSQKAVLKS--  176 (357)
T ss_dssp             TTTEEEEEET-TSCEEEC--------CCCCEEECCCSSCEEEEEECS----SSSEEEEEETTSCEEEEETTTTEEEEE--
T ss_pred             CCCCEEEEEC-CCEEEEeeccccceeEEEeeccCCCCCCEEEEEECC----CCCEEEEEeCCCeEEEEECCCCcEEEE--
Confidence            3454444433 457999999887755433321111111122333331    112344444456799999887643211  


Q ss_pred             CCCCcccCcccccccceEEE--CC-EEEEEEcCCCeEEEEECCCCeEEEeecCCCCCCCCceEEEE---CCeEEEEEEEe
Q 012227          293 MPSNIKLPVSLNFRSQAVSV--DG-ILYFMRSDPEGIVSYNMVTGVWKQFIIPTPLHLNDHTLAEC---GGRIMLVGLLT  366 (468)
Q Consensus       293 ~p~~~~~~~~~~~~~~~v~~--~G-~lY~~~~~~~~i~~fD~~~~~w~~i~~P~p~~~~~~~l~~~---~G~L~lv~~~~  366 (468)
                      +....       ..-..+.+  ++ .+++.+.....|..+|+.+.+.... ...........-+..   ++.+++++.. 
T Consensus       177 ~~~h~-------~~v~~v~~s~~~~~~~~s~~~dg~v~~wd~~~~~~~~~-~~~~~~~~~v~~v~~sp~~~~~la~g~~-  247 (357)
T 4g56_B          177 YNAHS-------SEVNCVAACPGKDTIFLSCGEDGRILLWDTRKPKPATR-IDFCASDTIPTSVTWHPEKDDTFACGDE-  247 (357)
T ss_dssp             ECCCS-------SCEEEEEECTTCSSCEEEEETTSCEEECCTTSSSCBCB-CCCTTCCSCEEEEEECTTSTTEEEEEES-
T ss_pred             EcCCC-------CCEEEEEEccCCCceeeeeccCCceEEEECCCCceeee-eeeccccccccchhhhhcccceEEEeec-
Confidence            10000       01112222  23 2344444456788899887653221 111111111222232   3556554432 


Q ss_pred             eCCccEEEEEEEecCCCCeEEEEeeChhhhhcccCcceEEEEEe-cCCEEEEEeeeCCCCeEEEEECCCCcEEEc
Q 012227          367 KNAATCVCIWELQKMTLLWKEVDRMPNIWCLDFYGKHVRMTCLG-NKGLLMLSLRSRQMNRLVTYNVMSREWLKV  440 (468)
Q Consensus       367 ~~~~~~i~Vw~ld~~~~~W~~v~~mp~~~~~~~~~~~~~~~~~~-~~~~I~~~~~~~~~~~l~~YD~~t~~w~~v  440 (468)
                         ...+.+|.+...+..    ..+..     ... .+.-.++. .++.+++. .+ ..+.+.+||+++++....
T Consensus       248 ---d~~i~~wd~~~~~~~----~~~~~-----~~~-~v~~l~~sp~~~~~las-gs-~D~~i~iwd~~~~~~~~~  307 (357)
T 4g56_B          248 ---TGNVSLVNIKNPDSA----QTSAV-----HSQ-NITGLAYSYHSSPFLAS-IS-EDCTVAVLDADFSEVFRD  307 (357)
T ss_dssp             ---SSCEEEEESSCGGGC----EEECC-----CSS-CEEEEEECSSSSCCEEE-EE-TTSCEEEECTTSCEEEEE
T ss_pred             ---ccceeEEECCCCcEe----EEEec-----cce-eEEEEEEcCCCCCEEEE-Ee-CCCEEEEEECCCCcEeEE
Confidence               246788855432111    11110     000 01111222 33344332 22 346789999998876654

>3v9f_A Two-component system sensor histidine kinase/RESP regulator, hybrid (ONE-component...; beta-propeller, beta-sandwich; 3.30A {Bacteroides thetaiotaomicron}

Probab=87.83  E-value=30  Score=36.53  Aligned_cols=200  Identities=13%  Similarity=0.107  Sum_probs=106.6

Q ss_pred             cCceEEEEEcCCceEEEEcCCCCceEecCCCC-----cCCcceeEEEEEEcCCCCCCCeEEEEEEe-cCcEEEEeCCCCC
Q 012227          213 AGGLVCFLDIGHRNFYVCNPLTQSFKELPARS-----VKVWSRVAVGMTLNGNSTSSGYKILWVGC-DGEYEIYDSLRNS  286 (468)
Q Consensus       213 ~~GLl~~~~~~~~~~~V~NP~T~~~~~LP~~~-----~~~~~~~~~~~~~d~~~~~~~ykVv~v~~-~~~v~vy~s~t~~  286 (468)
                      .+|-|.+.... .-+..+|+.++.+..+...+     .........++..|.     +..+ +++. .+++..|+..++.
T Consensus       322 ~~g~lWigt~~-~Gl~~~~~~~~~~~~~~~~~~~~~~~~l~~~~v~~i~~d~-----~g~l-Wigt~~~Gl~~~~~~~~~  394 (781)
T 3v9f_A          322 SFNNIWIGTWG-GGINFISNAPPTFHTWSYSPTQMNESSLSNKVVSSVCDDG-----QGKL-WIGTDGGGINVFENGKRV  394 (781)
T ss_dssp             SSCCEEEEEBS-SCEEEECSSCCSCEEEC----CCCSSCCSSSCEEEEEECT-----TSCE-EEEEBSSCEEEEETTEEE
T ss_pred             CCCCEEEEecC-CeEEEeCCCCCcceeeccCccccccCCCCCcceEEEEEcC-----CCCE-EEEeCCCcEEEEECCCCe
Confidence            45655555422 25888899888877654211     111111233444441     1233 4555 4569999998877


Q ss_pred             ccCCCCCCCCcccCcccccccceEEE--CCEEEEEEcCCCeEEEEECCCCeEEEeecCCCCCCCC-ceEEEE-CCeEEEE
Q 012227          287 WTRPGSMPSNIKLPVSLNFRSQAVSV--DGILYFMRSDPEGIVSYNMVTGVWKQFIIPTPLHLND-HTLAEC-GGRIMLV  362 (468)
Q Consensus       287 W~~~~~~p~~~~~~~~~~~~~~~v~~--~G~lY~~~~~~~~i~~fD~~~~~w~~i~~P~p~~~~~-~~l~~~-~G~L~lv  362 (468)
                      ++.... +..  ++.   ..-.+++.  +|.+++ +.....+..||..++++..+..+ ...... ..+.+- +|.|++.
T Consensus       395 ~~~~~~-~~~--~~~---~~v~~i~~d~~g~lWi-gt~~~Gl~~~~~~~~~~~~~~~~-~~~~~~v~~i~~d~~g~lwig  466 (781)
T 3v9f_A          395 AIYNKE-NRE--LLS---NSVLCSLKDSEGNLWF-GTYLGNISYYNTRLKKFQIIELE-KNELLDVRVFYEDKNKKIWIG  466 (781)
T ss_dssp             EECC--------CCC---SBEEEEEECTTSCEEE-EETTEEEEEECSSSCEEEECCST-TTCCCCEEEEEECTTSEEEEE
T ss_pred             EEEccC-CCC--CCC---cceEEEEECCCCCEEE-EeccCCEEEEcCCCCcEEEeccC-CCCCCeEEEEEECCCCCEEEE
Confidence            765421 110  100   01123333  566655 54445899999999999876432 111111 233333 6787764


Q ss_pred             EEEeeCCccEEEEEEEecCCCCeEEEEeeChhhhhcccCcceEEEEEecCCEEEEEeeeCCCCeEEEEECCCCcEEEcc
Q 012227          363 GLLTKNAATCVCIWELQKMTLLWKEVDRMPNIWCLDFYGKHVRMTCLGNKGLLMLSLRSRQMNRLVTYNVMSREWLKVP  441 (468)
Q Consensus       363 ~~~~~~~~~~i~Vw~ld~~~~~W~~v~~mp~~~~~~~~~~~~~~~~~~~~~~I~~~~~~~~~~~l~~YD~~t~~w~~v~  441 (468)
                      ..  .      .++.++..+++|+.....+..   ......+.-.+...+|.|++...   ...++.||+++++++.+.
T Consensus       467 t~--~------Gl~~~~~~~~~~~~~~~~~~~---~~~~~~i~~i~~d~~g~lWigt~---~~Gl~~~~~~~~~~~~~~  531 (781)
T 3v9f_A          467 TH--A------GVFVIDLASKKVIHHYDTSNS---QLLENFVRSIAQDSEGRFWIGTF---GGGVGIYTPDMQLVRKFN  531 (781)
T ss_dssp             ET--T------EEEEEESSSSSCCEEECTTTS---SCSCSCEEEEEECTTCCEEEEES---SSCEEEECTTCCEEEEEC
T ss_pred             EC--C------ceEEEeCCCCeEEecccCccc---ccccceeEEEEEcCCCCEEEEEc---CCCEEEEeCCCCeEEEcc
Confidence            32  1      467778777788776543211   01111122233446778877542   246999999999988764

>2aq5_A Coronin-1A; WD40 repeat, 7-bladed beta-propeller, structural protein; HET: CME; 1.75A {Mus musculus} PDB: 2b4e_A

Probab=87.66  E-value=19  Score=34.13  Aligned_cols=106  Identities=13%  Similarity=0.051  Sum_probs=50.6

Q ss_pred             EEEEEEecCcEEEEeCCCCCccCCCCCCCCcccCcccccccceEEE--CC-EEEEEEcCCCeEEEEECCCCeEEEeecCC
Q 012227          267 KILWVGCDGEYEIYDSLRNSWTRPGSMPSNIKLPVSLNFRSQAVSV--DG-ILYFMRSDPEGIVSYNMVTGVWKQFIIPT  343 (468)
Q Consensus       267 kVv~v~~~~~v~vy~s~t~~W~~~~~~p~~~~~~~~~~~~~~~v~~--~G-~lY~~~~~~~~i~~fD~~~~~w~~i~~P~  343 (468)
                      .++..+.++.+.+|+..++.......-+.. .+.. ....-..+.+  +| .+.+.+.....|..+|+.+++.... +..
T Consensus        96 ~l~s~s~dg~v~vw~~~~~~~~~~~~~~~~-~~~~-h~~~v~~~~~~p~~~~~l~s~~~dg~i~iwd~~~~~~~~~-~~~  172 (402)
T 2aq5_A           96 VIASGSEDCTVMVWEIPDGGLVLPLREPVI-TLEG-HTKRVGIVAWHPTAQNVLLSAGCDNVILVWDVGTGAAVLT-LGP  172 (402)
T ss_dssp             EEEEEETTSEEEEEECCTTCCSSCBCSCSE-EEEC-CSSCEEEEEECSSBTTEEEEEETTSCEEEEETTTTEEEEE-ECT
T ss_pred             EEEEEeCCCeEEEEEccCCCCccccCCceE-EecC-CCCeEEEEEECcCCCCEEEEEcCCCEEEEEECCCCCccEE-Eec
Confidence            444444466799999987754321100000 0000 0001112222  33 3555555556799999998876543 311


Q ss_pred             CCCCCCceEEEE--CCeEEEEEEEeeCCccEEEEEEEe
Q 012227          344 PLHLNDHTLAEC--GGRIMLVGLLTKNAATCVCIWELQ  379 (468)
Q Consensus       344 p~~~~~~~l~~~--~G~L~lv~~~~~~~~~~i~Vw~ld  379 (468)
                      ..+.....-+.+  +|++++++..    ...+.||.+.
T Consensus       173 ~~~~~~v~~~~~~~~~~~l~~~~~----d~~i~iwd~~  206 (402)
T 2aq5_A          173 DVHPDTIYSVDWSRDGALICTSCR----DKRVRVIEPR  206 (402)
T ss_dssp             TTCCSCEEEEEECTTSSCEEEEET----TSEEEEEETT
T ss_pred             CCCCCceEEEEECCCCCEEEEEec----CCcEEEEeCC
Confidence            111222222333  6666655532    2578888544

>1nir_A Nitrite reductase; hemoprotein, denitrification, domain swapping; HET: HEC DHE; 2.15A {Pseudomonas aeruginosa} SCOP: a.3.1.2 b.70.2.1 PDB: 1bl9_A* 1n15_A* 1n50_A* 1n90_A* 1gjq_A* 1nno_A* 1hzv_A* 1hzu_A*

Probab=87.36  E-value=9.9  Score=38.57  Aligned_cols=203  Identities=8%  Similarity=0.019  Sum_probs=97.7

Q ss_pred             ceEEEEEcCCceEEEEcCCCCceEe-cCCCCc--CC----cceeEEEEEEcCCCCCCCeEEEEEEecCcEEEEeCCCCCc
Q 012227          215 GLVCFLDIGHRNFYVCNPLTQSFKE-LPARSV--KV----WSRVAVGMTLNGNSTSSGYKILWVGCDGEYEIYDSLRNSW  287 (468)
Q Consensus       215 GLl~~~~~~~~~~~V~NP~T~~~~~-LP~~~~--~~----~~~~~~~~~~d~~~~~~~ykVv~v~~~~~v~vy~s~t~~W  287 (468)
                      .+|++.......+.|+|..|.+... ++....  ..    ......++.+.   ..+.+.++....++.+.++|..+..-
T Consensus       238 ~~l~v~~~~~~~v~v~D~~t~~~~~~i~~~g~~~~~~~~~~~~~v~~i~~s---~~~~~~~vs~~~~g~i~vvd~~~~~~  314 (543)
T 1nir_A          238 RYTIAGAYWPPQFAIMDGETLEPKQIVSTRGMTVDTQTYHPEPRVAAIIAS---HEHPEFIVNVKETGKVLLVNYKDIDN  314 (543)
T ss_dssp             TEEEEEEEESSEEEEEETTTCCEEEEEECCEECSSSCCEESCCCEEEEEEC---SSSSEEEEEETTTTEEEEEECTTSSS
T ss_pred             CEEEEEEccCCeEEEEeccccccceeecccCcccCccccccCCceEEEEEC---CCCCEEEEEECCCCeEEEEEecCCCc
Confidence            3555555445578888888876543 332110  00    00011223332   12234444444455688888776431


Q ss_pred             cCCCCCCCCcccCcccccccceEEE--CCE-EEEEEcCCCeEEEEECCCCeEEEeecCC---CCCCCCceEEEEC-CeEE
Q 012227          288 TRPGSMPSNIKLPVSLNFRSQAVSV--DGI-LYFMRSDPEGIVSYNMVTGVWKQFIIPT---PLHLNDHTLAECG-GRIM  360 (468)
Q Consensus       288 ~~~~~~p~~~~~~~~~~~~~~~v~~--~G~-lY~~~~~~~~i~~fD~~~~~w~~i~~P~---p~~~~~~~l~~~~-G~L~  360 (468)
                      ..+..++..       .+.. .+.+  +|. +|+.....+.|.++|+.+++.... ++.   |.......+..-+ |.++
T Consensus       315 l~~~~i~~~-------~~~~-~~~~spdg~~l~va~~~~~~v~v~D~~tg~l~~~-i~~g~~ph~g~g~~~~~p~~g~~~  385 (543)
T 1nir_A          315 LTVTSIGAA-------PFLH-DGGWDSSHRYFMTAANNSNKVAVIDSKDRRLSAL-VDVGKTPHPGRGANFVHPKYGPVW  385 (543)
T ss_dssp             CEEEEEECC-------SSCC-CEEECTTSCEEEEEEGGGTEEEEEETTTTEEEEE-EECSSSBCCTTCEEEEETTTEEEE
T ss_pred             ceeEEeccC-------cCcc-CceECCCCCEEEEEecCCCeEEEEECCCCeEEEe-eccCCCCCCCCCcccCCCCCccEE
Confidence            110011100       0011 1222  565 455554456899999999876543 222   1111122222223 6666


Q ss_pred             EEEEEeeCCccEEEEEEEecCC---CCeEEEEeeChhhhhcccCcceEEEEEecCCEEEEEee-eC---CCCeEEEEECC
Q 012227          361 LVGLLTKNAATCVCIWELQKMT---LLWKEVDRMPNIWCLDFYGKHVRMTCLGNKGLLMLSLR-SR---QMNRLVTYNVM  433 (468)
Q Consensus       361 lv~~~~~~~~~~i~Vw~ld~~~---~~W~~v~~mp~~~~~~~~~~~~~~~~~~~~~~I~~~~~-~~---~~~~l~~YD~~  433 (468)
                      +.+..   ...++.||..+..+   ..|+.+..++..--.-+     .+..--++..||+... ..   ....|.+||.+
T Consensus       386 ~s~~~---~d~~V~v~d~~~~~~~~~~~~~v~~l~~~g~~~~-----~v~~~pdg~~l~v~~~~~~~~~~~~~v~v~d~~  457 (543)
T 1nir_A          386 STSHL---GDGSISLIGTDPKNHPQYAWKKVAELQGQGGGSL-----FIKTHPKSSHLYVDTTFNPDARISQSVAVFDLK  457 (543)
T ss_dssp             EEEBS---SSSEEEEEECCTTTCTTTBTSEEEEEECSCSCCC-----CEECCTTCCEEEECCTTCSSHHHHTCEEEEETT
T ss_pred             EeccC---CCceEEEEEeCCCCCchhcCeEEEEEEcCCCCce-----EEEcCCCCCcEEEecCCCCCcccCceEEEEECC
Confidence            54321   23578999777632   34988887753210000     0111125567765321 11   13589999999


Q ss_pred             CCcE
Q 012227          434 SREW  437 (468)
Q Consensus       434 t~~w  437 (468)
                      +.+.
T Consensus       458 ~~~~  461 (543)
T 1nir_A          458 NLDA  461 (543)
T ss_dssp             CTTS
T ss_pred             CCCC
Confidence            8863

>4gqb_B Methylosome protein 50; TIM barrel, beta-propeller, methyltransferase, methylation, transferase-protein binding complex; HET: 0XU; 2.06A {Homo sapiens}

Probab=87.21  E-value=20  Score=33.68  Aligned_cols=110  Identities=6%  Similarity=-0.013  Sum_probs=54.9

Q ss_pred             ecCceEEEEEcCCceEEEEcCCCCceEecCCCCcCCcceeEEEEEEcCCCCCCCeEEEEEEecCcEEEEeCCCCCccCCC
Q 012227          212 SAGGLVCFLDIGHRNFYVCNPLTQSFKELPARSVKVWSRVAVGMTLNGNSTSSGYKILWVGCDGEYEIYDSLRNSWTRPG  291 (468)
Q Consensus       212 s~~GLl~~~~~~~~~~~V~NP~T~~~~~LP~~~~~~~~~~~~~~~~d~~~~~~~ykVv~v~~~~~v~vy~s~t~~W~~~~  291 (468)
                      +.+|-.++.......+.+||..+++....-.  .+......+.  +.   ..+...++..+.++.+.+||..+++-...-
T Consensus       136 spdg~~l~sgs~d~~i~iwd~~~~~~~~~~~--~h~~~V~~~~--~~---~~~~~~l~s~s~D~~v~iwd~~~~~~~~~~  208 (344)
T 4gqb_B          136 LSSGTQAVSGSKDICIKVWDLAQQVVLSSYR--AHAAQVTCVA--AS---PHKDSVFLSCSEDNRILLWDTRCPKPASQI  208 (344)
T ss_dssp             CTTSSEEEEEETTSCEEEEETTTTEEEEEEC--CCSSCEEEEE--EC---SSCTTEEEEEETTSCEEEEETTSSSCEEEC
T ss_pred             CCCCCEEEEEeCCCeEEEEECCCCcEEEEEc--CcCCceEEEE--ec---CCCCCceeeeccccccccccccccceeeee
Confidence            3456555555555679999998887653222  1111222233  32   112234444445677999998876532110


Q ss_pred             CCCCCcccCcccccccceEEE---CCEEEEEEcCCCeEEEEECCCCe
Q 012227          292 SMPSNIKLPVSLNFRSQAVSV---DGILYFMRSDPEGIVSYNMVTGV  335 (468)
Q Consensus       292 ~~p~~~~~~~~~~~~~~~v~~---~G~lY~~~~~~~~i~~fD~~~~~  335 (468)
                      .....       .....++.+   ++.+.+.+.....|..+|+.+.+
T Consensus       209 ~~~~~-------~~~~~~~~~~p~~~~~l~sg~~dg~v~~wd~~~~~  248 (344)
T 4gqb_B          209 GCSAP-------GYLPTSLAWHPQQSEVFVFGDENGTVSLVDTKSTS  248 (344)
T ss_dssp             C-----------CCCEEEEEECSSCTTEEEEEETTSEEEEEESCC--
T ss_pred             eccee-------eccceeeeecCCCCcceEEeccCCcEEEEECCCCc
Confidence            00000       001112222   45555666566678889998764

>2dg1_A DRP35, lactonase; beta propeller, hydrolase; 1.72A {Staphylococcus aureus} SCOP: b.68.6.1 PDB: 2dg0_A 2dso_A

Probab=87.08  E-value=11  Score=34.75  Aligned_cols=148  Identities=11%  Similarity=0.082  Sum_probs=74.5

Q ss_pred             EEEEEEe-cCcEEEEeCCCCCccCCCCCCCCcccCcccccccceEEE--CCEEEEEEcCC----CeEEEEECCCCeEEEe
Q 012227          267 KILWVGC-DGEYEIYDSLRNSWTRPGSMPSNIKLPVSLNFRSQAVSV--DGILYFMRSDP----EGIVSYNMVTGVWKQF  339 (468)
Q Consensus       267 kVv~v~~-~~~v~vy~s~t~~W~~~~~~p~~~~~~~~~~~~~~~v~~--~G~lY~~~~~~----~~i~~fD~~~~~w~~i  339 (468)
                      ++++++. .+.+.+||..++..+........         ...++..  +|.+|+.....    ..|..||+.++....+
T Consensus        57 ~l~~~~~~~~~i~~~d~~~~~~~~~~~~~~~---------~~~~i~~~~dg~l~v~~~~~~~~~~~i~~~d~~~~~~~~~  127 (333)
T 2dg1_A           57 QLFLLDVFEGNIFKINPETKEIKRPFVSHKA---------NPAAIKIHKDGRLFVCYLGDFKSTGGIFAATENGDNLQDI  127 (333)
T ss_dssp             CEEEEETTTCEEEEECTTTCCEEEEEECSSS---------SEEEEEECTTSCEEEEECTTSSSCCEEEEECTTSCSCEEE
T ss_pred             CEEEEECCCCEEEEEeCCCCcEEEEeeCCCC---------CcceEEECCCCcEEEEeCCCCCCCceEEEEeCCCCEEEEE
Confidence            4665544 34589999888776543210000         1123333  68888776543    4799999998876643


Q ss_pred             ecCCCCCCCCceEEE-ECCeEEEEEEEeeCCccEEEEEEEecCCCCeEEEEeeChhhhhcccCcceEEEEEe-cCCEEEE
Q 012227          340 IIPTPLHLNDHTLAE-CGGRIMLVGLLTKNAATCVCIWELQKMTLLWKEVDRMPNIWCLDFYGKHVRMTCLG-NKGLLML  417 (468)
Q Consensus       340 ~~P~p~~~~~~~l~~-~~G~L~lv~~~~~~~~~~i~Vw~ld~~~~~W~~v~~mp~~~~~~~~~~~~~~~~~~-~~~~I~~  417 (468)
                      .........-..++. -+|+|++.............||+++..+.+...+..-       ...  ..-.++. +++.||+
T Consensus       128 ~~~~~~~~~~~~i~~d~~g~l~v~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~-------~~~--~~~i~~~~dg~~l~v  198 (333)
T 2dg1_A          128 IEDLSTAYCIDDMVFDSKGGFYFTDFRGYSTNPLGGVYYVSPDFRTVTPIIQN-------ISV--ANGIALSTDEKVLWV  198 (333)
T ss_dssp             ECSSSSCCCEEEEEECTTSCEEEEECCCBTTBCCEEEEEECTTSCCEEEEEEE-------ESS--EEEEEECTTSSEEEE
T ss_pred             EccCccCCcccceEECCCCCEEEEeccccccCCCceEEEEeCCCCEEEEeecC-------CCc--ccceEECCCCCEEEE
Confidence            111111111112233 2788887543211111235789988765555443210       000  0112233 3345666


Q ss_pred             EeeeCCCCeEEEEECCC
Q 012227          418 SLRSRQMNRLVTYNVMS  434 (468)
Q Consensus       418 ~~~~~~~~~l~~YD~~t  434 (468)
                      ...  ....+..||+++
T Consensus       199 ~~~--~~~~i~~~d~~~  213 (333)
T 2dg1_A          199 TET--TANRLHRIALED  213 (333)
T ss_dssp             EEG--GGTEEEEEEECT
T ss_pred             EeC--CCCeEEEEEecC
Confidence            432  235788888853

>4e54_B DNA damage-binding protein 2; beta barrel, double helix, DDB1:WD40 beta-barrel fold, DNA D DNA repair, HOST-virus interactions; HET: DNA 3DR; 2.85A {Homo sapiens} PDB: 3ei4_B*

Probab=86.94  E-value=5.9  Score=38.54  Aligned_cols=112  Identities=12%  Similarity=-0.026  Sum_probs=55.0

Q ss_pred             CceEEEEEcCCceEEEEcCCCCceEecCCCCcCCcceeEEEEEEcCCCCCCCeEEEEEEecCcEEEEeCCCCCccCCCCC
Q 012227          214 GGLVCFLDIGHRNFYVCNPLTQSFKELPARSVKVWSRVAVGMTLNGNSTSSGYKILWVGCDGEYEIYDSLRNSWTRPGSM  293 (468)
Q Consensus       214 ~GLl~~~~~~~~~~~V~NP~T~~~~~LP~~~~~~~~~~~~~~~~d~~~~~~~ykVv~v~~~~~v~vy~s~t~~W~~~~~~  293 (468)
                      ++-+++.+...+.+.|||..+++...+-....+......+.  +.  +. +.-.++..+.++.+.+||..++.-......
T Consensus       131 ~~~~lasGs~dg~i~lWd~~~~~~~~~~~~~gH~~~V~~l~--f~--p~-~~~~l~s~s~D~~v~iwd~~~~~~~~~~~~  205 (435)
T 4e54_B          131 HPSTVAVGSKGGDIMLWNFGIKDKPTFIKGIGAGGSITGLK--FN--PL-NTNQFYASSMEGTTRLQDFKGNILRVFASS  205 (435)
T ss_dssp             CTTCEEEEETTSCEEEECSSCCSCCEEECCCSSSCCCCEEE--EC--SS-CTTEEEEECSSSCEEEEETTSCEEEEEECC
T ss_pred             CCCEEEEEeCCCEEEEEECCCCCceeEEEccCCCCCEEEEE--Ee--CC-CCCEEEEEeCCCEEEEeeccCCceeEEecc
Confidence            33333333344578899988776543222111122222233  33  11 223455555567799999876654322111


Q ss_pred             CCCcccCcccccccceEEECCEEEEEEcCCCeEEEEECCCCe
Q 012227          294 PSNIKLPVSLNFRSQAVSVDGILYFMRSDPEGIVSYNMVTGV  335 (468)
Q Consensus       294 p~~~~~~~~~~~~~~~v~~~G~lY~~~~~~~~i~~fD~~~~~  335 (468)
                      ... ..    ....-...-+|.+.+.+.....|..+|+.+..
T Consensus       206 ~~~-~~----~~~~~~~~~~~~~l~~g~~dg~i~~wd~~~~~  242 (435)
T 4e54_B          206 DTI-NI----WFCSLDVSASSRMVVTGDNVGNVILLNMDGKE  242 (435)
T ss_dssp             SSC-SC----CCCCEEEETTTTEEEEECSSSBEEEEESSSCB
T ss_pred             CCC-Cc----cEEEEEECCCCCEEEEEeCCCcEeeeccCcce
Confidence            000 00    00111112256666666666788899987654

>3vl1_A 26S proteasome regulatory subunit RPN14; beta-propeller, chaperone, RPT6; 1.60A {Saccharomyces cerevisiae} PDB: 3acp_A

Probab=86.93  E-value=21  Score=33.82  Aligned_cols=154  Identities=9%  Similarity=0.053  Sum_probs=73.1

Q ss_pred             CceEEEEEcCCceEEEEcCCCCceEecCCC-CcCCcceeEEEEEEcCC--------------CCCCCeEEEEEEe-cCcE
Q 012227          214 GGLVCFLDIGHRNFYVCNPLTQSFKELPAR-SVKVWSRVAVGMTLNGN--------------STSSGYKILWVGC-DGEY  277 (468)
Q Consensus       214 ~GLl~~~~~~~~~~~V~NP~T~~~~~LP~~-~~~~~~~~~~~~~~d~~--------------~~~~~ykVv~v~~-~~~v  277 (468)
                      +|-.++.......+.+||..+++....-.. .........+.+..+..              ..+.+.+.++.+. ++.+
T Consensus       192 ~~~~l~s~~~d~~v~iwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i  271 (420)
T 3vl1_A          192 RGRNVLSASLDGTIRLWECGTGTTIHTFNRKENPHDGVNSIALFVGTDRQLHEISTSKKNNLEFGTYGKYVIAGHVSGVI  271 (420)
T ss_dssp             TTTEEEEEETTSCEEEEETTTTEEEEEECBTTBTTCCEEEEEEEECCCSSCGGGCCCCCCTTCSSCTTEEEEEEETTSCE
T ss_pred             CCCEEEEEcCCCcEEEeECCCCceeEEeecCCCCCCCccEEEEecCCcceeeecccCcccceEEcCCCCEEEEEcCCCeE
Confidence            454444444456799999988775533221 11111222222221100              0112334444444 5569


Q ss_pred             EEEeCCCCCccCCCCCCCCcccCcccccccceEEE--CCE-EEEEEcCCCeEEEEECCCCe--EEEeecCCCCCCCCceE
Q 012227          278 EIYDSLRNSWTRPGSMPSNIKLPVSLNFRSQAVSV--DGI-LYFMRSDPEGIVSYNMVTGV--WKQFIIPTPLHLNDHTL  352 (468)
Q Consensus       278 ~vy~s~t~~W~~~~~~p~~~~~~~~~~~~~~~v~~--~G~-lY~~~~~~~~i~~fD~~~~~--w~~i~~P~p~~~~~~~l  352 (468)
                      .+||..++.-...  ......      .....+.+  +|. +.+.+.....|..||+.+..  ...+....  ...-..+
T Consensus       272 ~i~d~~~~~~~~~--~~~~~~------~~v~~~~~~~~~~~~l~~g~~dg~i~vwd~~~~~~~~~~~~~~~--~~~v~~~  341 (420)
T 3vl1_A          272 TVHNVFSKEQTIQ--LPSKFT------CSCNSLTVDGNNANYIYAGYENGMLAQWDLRSPECPVGEFLINE--GTPINNV  341 (420)
T ss_dssp             EEEETTTCCEEEE--ECCTTS------SCEEEEEECSSCTTEEEEEETTSEEEEEETTCTTSCSEEEEEST--TSCEEEE
T ss_pred             EEEECCCCceeEE--cccccC------CCceeEEEeCCCCCEEEEEeCCCeEEEEEcCCCcCchhhhhccC--CCCceEE
Confidence            9999876542111  000000      01112223  344 45555555789999998753  22222111  1111233


Q ss_pred             EEECCeEEEEEEEeeCCccEEEEEEEecC
Q 012227          353 AECGGRIMLVGLLTKNAATCVCIWELQKM  381 (468)
Q Consensus       353 ~~~~G~L~lv~~~~~~~~~~i~Vw~ld~~  381 (468)
                      ...+|++++.+.    ....+.+|.+...
T Consensus       342 ~~~~~~~l~s~~----~d~~v~iw~~~~~  366 (420)
T 3vl1_A          342 YFAAGALFVSSG----FDTSIKLDIISDP  366 (420)
T ss_dssp             EEETTEEEEEET----TTEEEEEEEECCT
T ss_pred             EeCCCCEEEEec----CCccEEEEeccCC
Confidence            445787665542    2368999988763

>1gxr_A ESG1, transducin-like enhancer protein 1; transcriptional CO-repressor, WD40, transcription repressor, WD repeat; 1.65A {Homo sapiens} SCOP: b.69.4.1 PDB: 2ce8_A 2ce9_A

Probab=86.77  E-value=18  Score=32.81  Aligned_cols=192  Identities=11%  Similarity=0.102  Sum_probs=88.1

Q ss_pred             cCceEEEEEcCCceEEEEcCCCCceEecCCCCcCCcceeEEEEEEcCCCCCCCeEEEEEEecCcEEEEeCCCCCccCCCC
Q 012227          213 AGGLVCFLDIGHRNFYVCNPLTQSFKELPARSVKVWSRVAVGMTLNGNSTSSGYKILWVGCDGEYEIYDSLRNSWTRPGS  292 (468)
Q Consensus       213 ~~GLl~~~~~~~~~~~V~NP~T~~~~~LP~~~~~~~~~~~~~~~~d~~~~~~~ykVv~v~~~~~v~vy~s~t~~W~~~~~  292 (468)
                      .+|-.++.......+.+||..+++.............  ...+.+.+    +.-.++..+.++.+.+||..++.-...  
T Consensus       107 ~~~~~l~~~~~d~~i~~~d~~~~~~~~~~~~~~~~~~--i~~~~~~~----~~~~l~~~~~dg~v~~~d~~~~~~~~~--  178 (337)
T 1gxr_A          107 PDGCTLIVGGEASTLSIWDLAAPTPRIKAELTSSAPA--CYALAISP----DSKVCFSCCSDGNIAVWDLHNQTLVRQ--  178 (337)
T ss_dssp             TTSSEEEEEESSSEEEEEECCCC--EEEEEEECSSSC--EEEEEECT----TSSEEEEEETTSCEEEEETTTTEEEEE--
T ss_pred             CCCCEEEEEcCCCcEEEEECCCCCcceeeecccCCCc--eEEEEECC----CCCEEEEEeCCCcEEEEeCCCCceeee--
Confidence            3454444444446799999988774332221111111  22333331    122344444456799999887643211  


Q ss_pred             CCCCcccCcccccccceEEE--CCEEEEEEcCCCeEEEEECCCCeEEEeecCCCCCCCCceEEEE-CCeEEEEEEEeeCC
Q 012227          293 MPSNIKLPVSLNFRSQAVSV--DGILYFMRSDPEGIVSYNMVTGVWKQFIIPTPLHLNDHTLAEC-GGRIMLVGLLTKNA  369 (468)
Q Consensus       293 ~p~~~~~~~~~~~~~~~v~~--~G~lY~~~~~~~~i~~fD~~~~~w~~i~~P~p~~~~~~~l~~~-~G~L~lv~~~~~~~  369 (468)
                      +....       ..-..+.+  +|...+.+.....|..||+.+.+-... .....  ....+... +|++++++..    
T Consensus       179 ~~~~~-------~~i~~~~~~~~~~~l~~~~~dg~i~~~d~~~~~~~~~-~~~~~--~v~~~~~s~~~~~l~~~~~----  244 (337)
T 1gxr_A          179 FQGHT-------DGASCIDISNDGTKLWTGGLDNTVRSWDLREGRQLQQ-HDFTS--QIFSLGYCPTGEWLAVGME----  244 (337)
T ss_dssp             ECCCS-------SCEEEEEECTTSSEEEEEETTSEEEEEETTTTEEEEE-EECSS--CEEEEEECTTSSEEEEEET----
T ss_pred             eeccc-------CceEEEEECCCCCEEEEEecCCcEEEEECCCCceEee-ecCCC--ceEEEEECCCCCEEEEEcC----
Confidence            11000       01112223  565555665667899999988765432 22111  11122221 5666655532    


Q ss_pred             ccEEEEEEEecCCCCeEEEEeeChhhhhcccCcceEEEEEecCCEEEEEeeeCCCCeEEEEECCCCcEEE
Q 012227          370 ATCVCIWELQKMTLLWKEVDRMPNIWCLDFYGKHVRMTCLGNKGLLMLSLRSRQMNRLVTYNVMSREWLK  439 (468)
Q Consensus       370 ~~~i~Vw~ld~~~~~W~~v~~mp~~~~~~~~~~~~~~~~~~~~~~I~~~~~~~~~~~l~~YD~~t~~w~~  439 (468)
                      ...+.+|.++..  +  .. .+..     ..+ ...-..+..++..++..  ...+.+.+||+++++...
T Consensus       245 ~~~i~~~~~~~~--~--~~-~~~~-----~~~-~v~~~~~~~~~~~l~~~--~~dg~i~~~~~~~~~~~~  301 (337)
T 1gxr_A          245 SSNVEVLHVNKP--D--KY-QLHL-----HES-CVLSLKFAYCGKWFVST--GKDNLLNAWRTPYGASIF  301 (337)
T ss_dssp             TSCEEEEETTSS--C--EE-EECC-----CSS-CEEEEEECTTSSEEEEE--ETTSEEEEEETTTCCEEE
T ss_pred             CCcEEEEECCCC--C--eE-EEcC-----Ccc-ceeEEEECCCCCEEEEe--cCCCcEEEEECCCCeEEE
Confidence            245778865432  1  11 1110     000 01112223233333322  235689999998886553

>3azo_A Aminopeptidase; POP family, hydrolase; 2.00A {Streptomyces morookaensis} PDB: 3azp_A 3azq_A

Probab=86.52  E-value=29  Score=35.57  Aligned_cols=210  Identities=11%  Similarity=0.048  Sum_probs=99.3

Q ss_pred             Cce-EEEEEcCCceEEEEcCC--C-CceEecCCCCcCCcceeEEEEEEcCCCCCCCeEEEEEEec----------CcEEE
Q 012227          214 GGL-VCFLDIGHRNFYVCNPL--T-QSFKELPARSVKVWSRVAVGMTLNGNSTSSGYKILWVGCD----------GEYEI  279 (468)
Q Consensus       214 ~GL-l~~~~~~~~~~~V~NP~--T-~~~~~LP~~~~~~~~~~~~~~~~d~~~~~~~ykVv~v~~~----------~~v~v  279 (468)
                      +.. |.+......+++++|.-  + ++.+.|...+..........+.+.++   + -+|+....+          ..+.+
T Consensus        90 g~~~la~~~~~~~~l~~~~~~~~g~~~~~~l~~~~~~~~~~~~~~~~~spD---g-~~l~~~~~~~~~~~~~~~~~~i~~  165 (662)
T 3azo_A           90 GGPLLVFTHFGDQRLYAFEPDAPGGAVPRPLTPVSAVGGGLRWADPVLLPE---R-GEVWCMAEEFTGEGPSDVRRFLAA  165 (662)
T ss_dssp             SSCEEEEEBTTTCCEEEECTTSTTCCCCEECSCCCCSTTCEEEEEEEEETT---T-TEEEEEEEEECSSSTTCEEEEEEE
T ss_pred             CCeEEEEEECCCCeEEEEcCCCCCCCCCEeccCCccCCCCccccCcEECCC---C-CEEEEEEecccCCCCCCceeEEEE
Confidence            445 56655445679999987  4 77676665321000111122333311   1 234444333          24777


Q ss_pred             EeCCC------CCccCCC-CCCCCcccCcccccccceEEECC-EEEEEEcCC-------CeEEEEECC-CC---eEEEee
Q 012227          280 YDSLR------NSWTRPG-SMPSNIKLPVSLNFRSQAVSVDG-ILYFMRSDP-------EGIVSYNMV-TG---VWKQFI  340 (468)
Q Consensus       280 y~s~t------~~W~~~~-~~p~~~~~~~~~~~~~~~v~~~G-~lY~~~~~~-------~~i~~fD~~-~~---~w~~i~  340 (468)
                      ++..+      +.-+.+. .-..        ........-+| .|++.....       ..|..+|+. ++   ....+.
T Consensus       166 ~~~~~~~~~~~~~~~~l~~~~~~--------~~~~~~~SpDG~~la~~~~~~~~~~~~~~~i~~~d~~~~g~~~~~~~l~  237 (662)
T 3azo_A          166 VPLDGSAAADRSAVRELSDDAHR--------FVTGPRLSPDGRQAVWLAWDHPRMPWEGTELKTARVTEDGRFADTRTLL  237 (662)
T ss_dssp             EETTSTTTTCGGGSEESSCSCSS--------EECCCEECTTSSEEEEEEECTTCCTTTCEEEEEEEECTTSCEEEEEEEE
T ss_pred             EECCCCccccCCceeEEEecCCC--------cccCceECCCCCEEEEEECCCCCCCCCCcEEEEEEECCCCcccccEEeC
Confidence            88776      5544332 1100        00111222355 455554322       368889998 56   444431


Q ss_pred             cCCCCCCCCceEEEE-CCeEEEEEEEeeCCccEEEEEEEecCCCCeEEEEeeChhhhhcccCcceEEEEEecCCEEEEEe
Q 012227          341 IPTPLHLNDHTLAEC-GGRIMLVGLLTKNAATCVCIWELQKMTLLWKEVDRMPNIWCLDFYGKHVRMTCLGNKGLLMLSL  419 (468)
Q Consensus       341 ~P~p~~~~~~~l~~~-~G~L~lv~~~~~~~~~~i~Vw~ld~~~~~W~~v~~mp~~~~~~~~~~~~~~~~~~~~~~I~~~~  419 (468)
                      . . .......+.-. +|+|+++..  .  .....||.++..+++++.+....................+..++.+++..
T Consensus       238 ~-~-~~~~~~~~~~spdg~l~~~~~--~--~~~~~l~~~~~~~~~~~~l~~~~~~~~~p~w~~~~~~~~~~~~~~~~~~~  311 (662)
T 3azo_A          238 G-G-PEEAIAQAEWAPDGSLIVATD--R--TGWWNLHRVDPATGAATQLCRREEEFAGPLWTPGMRWFAPLANGLIAVVH  311 (662)
T ss_dssp             E-E-TTBCEEEEEECTTSCEEEEEC--T--TSSCEEEEECTTTCCEEESSCCSSBSSCCCCSTTCCSEEECTTSCEEEEE
T ss_pred             C-C-CCceEcceEECCCCeEEEEEC--C--CCCeEEEEEECCCCceeecccccccccCccccccCceEeEeCCCEEEEEE
Confidence            1 1 01111122222 788765542  1  12457888887667777654322111000000000112233345555544


Q ss_pred             eeCCCCeEEEEECCCCcEEEccC
Q 012227          420 RSRQMNRLVTYNVMSREWLKVPG  442 (468)
Q Consensus       420 ~~~~~~~l~~YD~~t~~w~~v~~  442 (468)
                      .. ....|+.+|+++++.+.+..
T Consensus       312 ~~-~~~~l~~~d~~~~~~~~l~~  333 (662)
T 3azo_A          312 GK-GAAVLGILDPESGELVDAAG  333 (662)
T ss_dssp             BS-SSCEEEEEETTTTEEEECCS
T ss_pred             Ec-CccEEEEEECCCCcEEEecC
Confidence            33 45678888999888887753

>3g4e_A Regucalcin; six bladed beta-propeller, gluconolcatonase, organophosphate hydrolase, calcium bound, alternative splicing, cytoplasm, phosphoprotein; 1.42A {Homo sapiens} PDB: 3g4h_B

Probab=86.44  E-value=10  Score=34.68  Aligned_cols=106  Identities=10%  Similarity=0.008  Sum_probs=59.9

Q ss_pred             CCEEEEEEcCCCeEEEEECCCCeEEEeecCCCCCCCCceEEEE-CCeEEEEEEEeeCCccEEEEEEEecCCCCeEEEEee
Q 012227          313 DGILYFMRSDPEGIVSYNMVTGVWKQFIIPTPLHLNDHTLAEC-GGRIMLVGLLTKNAATCVCIWELQKMTLLWKEVDRM  391 (468)
Q Consensus       313 ~G~lY~~~~~~~~i~~fD~~~~~w~~i~~P~p~~~~~~~l~~~-~G~L~lv~~~~~~~~~~i~Vw~ld~~~~~W~~v~~m  391 (468)
                      +|.+||.......|..||+.++....+..+..    -..++.. +|+|++..  .    .  .|+.++..+++++.+...
T Consensus        24 ~~~l~~~d~~~~~i~~~d~~~~~~~~~~~~~~----~~~i~~~~dG~l~v~~--~----~--~l~~~d~~~g~~~~~~~~   91 (297)
T 3g4e_A           24 SNSLLFVDIPAKKVCRWDSFTKQVQRVTMDAP----VSSVALRQSGGYVATI--G----T--KFCALNWKEQSAVVLATV   91 (297)
T ss_dssp             TTEEEEEETTTTEEEEEETTTCCEEEEECSSC----EEEEEEBTTSSEEEEE--T----T--EEEEEETTTTEEEEEEEC
T ss_pred             CCEEEEEECCCCEEEEEECCCCcEEEEeCCCc----eEEEEECCCCCEEEEE--C----C--eEEEEECCCCcEEEEEec
Confidence            58999998877889999999887765543321    1223332 77865542  1    2  466667766777766554


Q ss_pred             ChhhhhcccCcceEEEEEecCCEEEEEeeeC---------CCCeEEEEECCC
Q 012227          392 PNIWCLDFYGKHVRMTCLGNKGLLMLSLRSR---------QMNRLVTYNVMS  434 (468)
Q Consensus       392 p~~~~~~~~~~~~~~~~~~~~~~I~~~~~~~---------~~~~l~~YD~~t  434 (468)
                      +.....    ....-..+..+|.+|+.....         ....++.||.+.
T Consensus        92 ~~~~~~----~~~~di~~d~dG~l~~~~~~~~~~~~~~~~~~~~l~~~d~~g  139 (297)
T 3g4e_A           92 DNDKKN----NRFNDGKVDPAGRYFAGTMAEETAPAVLERHQGALYSLFPDH  139 (297)
T ss_dssp             CTTCSS----EEEEEEEECTTSCEEEEEEECCSBTTBCCTTCEEEEEECTTS
T ss_pred             CCCCCC----CCCCCEEECCCCCEEEecCCcccccccccCCCcEEEEEECCC
Confidence            321100    001112334456677743221         234688888764

>2hes_X YDR267CP; beta-propeller, WD40 repeat, biosynthetic protein; 1.70A {Saccharomyces cerevisiae}

Probab=86.26  E-value=19  Score=33.28  Aligned_cols=115  Identities=16%  Similarity=0.193  Sum_probs=57.1

Q ss_pred             CCEEEEEEcCCCeEEEEECCCCeEEEeecCCCCCCCCceEEEE--C--CeEEEEEEEeeCCccEEEEEEEecC----CCC
Q 012227          313 DGILYFMRSDPEGIVSYNMVTGVWKQFIIPTPLHLNDHTLAEC--G--GRIMLVGLLTKNAATCVCIWELQKM----TLL  384 (468)
Q Consensus       313 ~G~lY~~~~~~~~i~~fD~~~~~w~~i~~P~p~~~~~~~l~~~--~--G~L~lv~~~~~~~~~~i~Vw~ld~~----~~~  384 (468)
                      +|.+.+.++....|..+|..++.+..+.. ...+.....-+..  +  +.+ ++.+..   ..++.||.+...    ...
T Consensus       164 ~~~~l~s~s~D~~i~iW~~~~~~~~~~~~-~~~h~~~v~~~~~~~~~~~~~-l~s~s~---D~~v~iw~~~~~~~~~~~~  238 (330)
T 2hes_X          164 SEALLASSSYDDTVRIWKDYDDDWECVAV-LNGHEGTVWSSDFDKTEGVFR-LCSGSD---DSTVRVWKYMGDDEDDQQE  238 (330)
T ss_dssp             SSSEEEEEETTSCEEEEEEETTEEEEEEE-ECCCSSCEEEEEECCSSSSCE-EEEEET---TSCEEEEEEEEECTTSCEE
T ss_pred             CCCEEEEEcCCCeEEEEECCCCCeeEEEE-ccCCCCcEEEEEecCCCCeeE-EEEEeC---CCeEEEEEecCCCccccce
Confidence            45555555555678888888776654421 1111111222222  2  333 333322   257899988643    235


Q ss_pred             eEEEEeeChhhhhcccCcceEEEEEecCCEEEEEeeeCCCCeEEEEECCCCcEEEc
Q 012227          385 WKEVDRMPNIWCLDFYGKHVRMTCLGNKGLLMLSLRSRQMNRLVTYNVMSREWLKV  440 (468)
Q Consensus       385 W~~v~~mp~~~~~~~~~~~~~~~~~~~~~~I~~~~~~~~~~~l~~YD~~t~~w~~v  440 (468)
                      |..+..++....     ..+.-.++..++.|+ .. + ..+.+.+||..+++|+.+
T Consensus       239 ~~~~~~~~~~h~-----~~v~~v~~s~~~~l~-s~-~-~dg~v~iw~~~~~~~~~~  286 (330)
T 2hes_X          239 WVCEAILPDVHK-----RQVYNVAWGFNGLIA-SV-G-ADGVLAVYEEVDGEWKVF  286 (330)
T ss_dssp             EEEEEECCSCCS-----SCEEEEEECTTSCEE-EE-E-TTSCEEEEEEETTEEEEE
T ss_pred             eEEeeecccccc-----cceEEEEEcCCCEEE-EE-e-CCCEEEEEEcCCCceEEE
Confidence            665555432110     011111223445443 22 2 356788999988887654

>3vgz_A Uncharacterized protein YNCE; beta-propeller, protein binding; 1.70A {Escherichia coli} PDB: 3vh0_A*

Probab=86.03  E-value=21  Score=32.81  Aligned_cols=204  Identities=6%  Similarity=-0.024  Sum_probs=90.2

Q ss_pred             CceEEEEEcC------CceEEEEcCCCCceEe-cCCCCcCCcceeEEEEEEcCCCCCCCeEEEEEEe-cCcEEEEeCCCC
Q 012227          214 GGLVCFLDIG------HRNFYVCNPLTQSFKE-LPARSVKVWSRVAVGMTLNGNSTSSGYKILWVGC-DGEYEIYDSLRN  285 (468)
Q Consensus       214 ~GLl~~~~~~------~~~~~V~NP~T~~~~~-LP~~~~~~~~~~~~~~~~d~~~~~~~ykVv~v~~-~~~v~vy~s~t~  285 (468)
                      ++.+++....      ...++++|+.|++... ++.. ..   ...+.+..|     + -++++... ++.+.+||..++
T Consensus        52 g~~l~~~~~~~~~~~~~~~v~~~d~~~~~~~~~~~~~-~~---~~~~~~s~d-----g-~~l~v~~~~~~~v~~~d~~~~  121 (353)
T 3vgz_A           52 ENALWLATSQSRKLDKGGVVYRLDPVTLEVTQAIHND-LK---PFGATINNT-----T-QTLWFGNTVNSAVTAIDAKTG  121 (353)
T ss_dssp             TTEEEEEECCCTTTEESEEEEEECTTTCCEEEEEEES-SC---CCSEEEETT-----T-TEEEEEETTTTEEEEEETTTC
T ss_pred             CCEEEEEcCCCcCCCCCccEEEEcCCCCeEEEEEecC-CC---cceEEECCC-----C-CEEEEEecCCCEEEEEeCCCC
Confidence            3455555432      4579999999887543 2221 11   112333222     1 23444443 356899998876


Q ss_pred             CccCCCCCCCCcccCcccccccceEEE--CC-EEEEEEc-CCCeEEEEECCCCeEEEeecCCCCCCCCceEEEE-CCeEE
Q 012227          286 SWTRPGSMPSNIKLPVSLNFRSQAVSV--DG-ILYFMRS-DPEGIVSYNMVTGVWKQFIIPTPLHLNDHTLAEC-GGRIM  360 (468)
Q Consensus       286 ~W~~~~~~p~~~~~~~~~~~~~~~v~~--~G-~lY~~~~-~~~~i~~fD~~~~~w~~i~~P~p~~~~~~~l~~~-~G~L~  360 (468)
                      +-...-..+...............+.+  +| .+|+... ....|..+|+.+.+.... ++.... ....+... +|+..
T Consensus       122 ~~~~~~~~~~~~~~~~~~~~~~~~~~~s~dg~~l~~~~~~~~~~i~~~d~~~~~~~~~-~~~~~~-~~~~~~~s~dg~~l  199 (353)
T 3vgz_A          122 EVKGRLVLDDRKRTEEVRPLQPRELVADDATNTVYISGIGKESVIWVVDGGNIKLKTA-IQNTGK-MSTGLALDSEGKRL  199 (353)
T ss_dssp             CEEEEEESCCCCCCSSCCCCEEEEEEEETTTTEEEEEEESSSCEEEEEETTTTEEEEE-ECCCCT-TCCCCEEETTTTEE
T ss_pred             eeEEEEecCCCccccccCCCCCceEEECCCCCEEEEEecCCCceEEEEcCCCCceEEE-ecCCCC-ccceEEECCCCCEE
Confidence            532110111000000000000112333  44 5676663 346799999998876543 331111 11223332 55543


Q ss_pred             EEEEEeeCCccEEEEEEEecCCCCeEEEEeeChhhhhcccCcceEEEEEecCCEEEEEeeeCCCCeEEEEECCCCcEEEc
Q 012227          361 LVGLLTKNAATCVCIWELQKMTLLWKEVDRMPNIWCLDFYGKHVRMTCLGNKGLLMLSLRSRQMNRLVTYNVMSREWLKV  440 (468)
Q Consensus       361 lv~~~~~~~~~~i~Vw~ld~~~~~W~~v~~mp~~~~~~~~~~~~~~~~~~~~~~I~~~~~~~~~~~l~~YD~~t~~w~~v  440 (468)
                      ++...    ...+.+|  |..+.+-......+.....   .....+....+++.+|+..  ...+.+.+||+++++....
T Consensus       200 ~~~~~----~~~i~~~--d~~~~~~~~~~~~~~~~~~---~~~~~~~~s~dg~~l~~~~--~~~~~v~~~d~~~~~~~~~  268 (353)
T 3vgz_A          200 YTTNA----DGELITI--DTADNKILSRKKLLDDGKE---HFFINISLDTARQRAFITD--SKAAEVLVVDTRNGNILAK  268 (353)
T ss_dssp             EEECT----TSEEEEE--ETTTTEEEEEEECCCSSSC---CCEEEEEEETTTTEEEEEE--SSSSEEEEEETTTCCEEEE
T ss_pred             EEEcC----CCeEEEE--ECCCCeEEEEEEcCCCCCC---cccceEEECCCCCEEEEEe--CCCCEEEEEECCCCcEEEE
Confidence            33321    2344444  5433322111122110000   0000122222566776643  3357899999988876543

>3mkq_A Coatomer beta'-subunit; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae} PDB: 2ynp_A

Probab=86.02  E-value=12  Score=39.55  Aligned_cols=137  Identities=14%  Similarity=0.034  Sum_probs=64.8

Q ss_pred             CceEEEEcCCCCceEe-cCCCCcCCcceeEEEEEEcCCCCCCCeEEEEEEecCcEEEEeCCCCCccCCCCCCCCcccCcc
Q 012227          224 HRNFYVCNPLTQSFKE-LPARSVKVWSRVAVGMTLNGNSTSSGYKILWVGCDGEYEIYDSLRNSWTRPGSMPSNIKLPVS  302 (468)
Q Consensus       224 ~~~~~V~NP~T~~~~~-LP~~~~~~~~~~~~~~~~d~~~~~~~ykVv~v~~~~~v~vy~s~t~~W~~~~~~p~~~~~~~~  302 (468)
                      .+.+.|||..+++... +...   ......+.+..+      .-.++..+.++.+.+|+..++.....  +.....    
T Consensus        34 ~g~v~iwd~~~~~~~~~~~~~---~~~v~~~~~s~~------~~~l~~~~~dg~i~vw~~~~~~~~~~--~~~~~~----   98 (814)
T 3mkq_A           34 SGRVEIWNYETQVEVRSIQVT---ETPVRAGKFIAR------KNWIIVGSDDFRIRVFNYNTGEKVVD--FEAHPD----   98 (814)
T ss_dssp             TSEEEEEETTTTEEEEEEECC---SSCEEEEEEEGG------GTEEEEEETTSEEEEEETTTCCEEEE--EECCSS----
T ss_pred             CCEEEEEECCCCceEEEEecC---CCcEEEEEEeCC------CCEEEEEeCCCeEEEEECCCCcEEEE--EecCCC----
Confidence            4568888887776543 2221   112223333322      12344444456799999887764321  000000    


Q ss_pred             cccccceEEE--CCEEEEEEcCCCeEEEEECCCC-eEEEeecCCCCCCCC-ceEEEE--CCeEEEEEEEeeCCccEEEEE
Q 012227          303 LNFRSQAVSV--DGILYFMRSDPEGIVSYNMVTG-VWKQFIIPTPLHLND-HTLAEC--GGRIMLVGLLTKNAATCVCIW  376 (468)
Q Consensus       303 ~~~~~~~v~~--~G~lY~~~~~~~~i~~fD~~~~-~w~~i~~P~p~~~~~-~~l~~~--~G~L~lv~~~~~~~~~~i~Vw  376 (468)
                         .-..+.+  +|...+.+.....|..+|+.++ ..... ...  +... ..+.-.  +|.+++++..    ...+.+|
T Consensus        99 ---~v~~~~~s~~~~~l~~~~~dg~i~vw~~~~~~~~~~~-~~~--~~~~v~~~~~~p~~~~~l~~~~~----dg~v~vw  168 (814)
T 3mkq_A           99 ---YIRSIAVHPTKPYVLSGSDDLTVKLWNWENNWALEQT-FEG--HEHFVMCVAFNPKDPSTFASGCL----DRTVKVW  168 (814)
T ss_dssp             ---CEEEEEECSSSSEEEEEETTSEEEEEEGGGTSEEEEE-EEC--CSSCEEEEEEETTEEEEEEEEET----TSEEEEE
T ss_pred             ---CEEEEEEeCCCCEEEEEcCCCEEEEEECCCCceEEEE-EcC--CCCcEEEEEEEcCCCCEEEEEeC----CCeEEEE
Confidence               0111222  4544445555568999999876 33332 111  1111 122222  4555554432    2578888


Q ss_pred             EEecCCCCe
Q 012227          377 ELQKMTLLW  385 (468)
Q Consensus       377 ~ld~~~~~W  385 (468)
                      .+......+
T Consensus       169 d~~~~~~~~  177 (814)
T 3mkq_A          169 SLGQSTPNF  177 (814)
T ss_dssp             ETTCSSCSE
T ss_pred             ECCCCccee
Confidence            665433333

>4a0p_A LRP6, LRP-6, low-density lipoprotein receptor-related protein; signaling, WNT signalling, WNT3A, DKK1, MESD; HET: NAG; 1.90A {Homo sapiens} PDB: 3s2k_A* 3s8z_A* 3s8v_A*

Probab=85.98  E-value=34  Score=35.31  Aligned_cols=186  Identities=10%  Similarity=0.100  Sum_probs=98.7

Q ss_pred             eeecCceEEEEEcCCceEEEEcCCCCceEecCCCCcCCcceeEEEEEEcCCCCCCCeEEEEEEec-CcEEEEeCCCCCcc
Q 012227          210 VASAGGLVCFLDIGHRNFYVCNPLTQSFKELPARSVKVWSRVAVGMTLNGNSTSSGYKILWVGCD-GEYEIYDSLRNSWT  288 (468)
Q Consensus       210 ~~s~~GLl~~~~~~~~~~~V~NP~T~~~~~LP~~~~~~~~~~~~~~~~d~~~~~~~ykVv~v~~~-~~v~vy~s~t~~W~  288 (468)
                      +...+|.|+..+....+++.+++-......+-.....    ...|+.+|  ..  .-+||+.... ..+++++.....=+
T Consensus        44 ~d~~~~~lywtD~~~~~I~r~~~~g~~~~~v~~~g~~----~P~GlAvD--~~--~~~LY~tD~~~~~I~v~~~dG~~~~  115 (628)
T 4a0p_A           44 FDVTDNRIYWTDISLKTISRAFMNGSALEHVVEFGLD----YPEGMAVD--WL--GKNLYWADTGTNRIEVSKLDGQHRQ  115 (628)
T ss_dssp             EETTTTEEEEEETTTTEEEEEETTSCSCEEEECSSCS----CCCEEEEE--TT--TTEEEEEETTTTEEEEEETTSTTCE
T ss_pred             EECCCCEEEEEECCCCeEEEEECCCCCcEEEEeCCCC----CcceEEEE--eC--CCEEEEEECCCCEEEEEecCCCcEE
Confidence            5556889999888777899998876554443332211    12345555  21  2467766543 34888887543211


Q ss_pred             CCCCCCCCcccCcccccccceEEE---CCEEEEEEcC-CCeEEEEECCCCeEEEeecCCCCCCCC-ceEEEE--CCeEEE
Q 012227          289 RPGSMPSNIKLPVSLNFRSQAVSV---DGILYFMRSD-PEGIVSYNMVTGVWKQFIIPTPLHLND-HTLAEC--GGRIML  361 (468)
Q Consensus       289 ~~~~~p~~~~~~~~~~~~~~~v~~---~G~lY~~~~~-~~~i~~fD~~~~~w~~i~~P~p~~~~~-~~l~~~--~G~L~l  361 (468)
                      .+..  ....       ...++++   +|.|||.... ...|..++++...-..+ ..   .... ..|+.-  +++||+
T Consensus       116 ~l~~--~~l~-------~P~~iavdp~~G~lY~tD~g~~~~I~r~~~dG~~~~~l-~~---~~~~P~GlalD~~~~~LY~  182 (628)
T 4a0p_A          116 VLVW--KDLD-------SPRALALDPAEGFMYWTEWGGKPKIDRAAMDGSERTTL-VP---NVGRANGLTIDYAKRRLYW  182 (628)
T ss_dssp             EEEC--SSCC-------CEEEEEEETTTTEEEEEECSSSCEEEEEETTSCSCEEE-EC---SCSSEEEEEEETTTTEEEE
T ss_pred             EEEe--CCCC-------CcccEEEccCCCeEEEeCCCCCCEEEEEeCCCCceEEE-EC---CCCCcceEEEccccCEEEE
Confidence            1110  1111       1223444   6999998743 56899999987655444 21   1111 233333  689998


Q ss_pred             EEEEeeCCccEEEEEEEecCC-CCeEEEEeeChhhhhcccCcceEEEEEecCCEEEEEeeeCCCCeEEEEECCCC
Q 012227          362 VGLLTKNAATCVCIWELQKMT-LLWKEVDRMPNIWCLDFYGKHVRMTCLGNKGLLMLSLRSRQMNRLVTYNVMSR  435 (468)
Q Consensus       362 v~~~~~~~~~~i~Vw~ld~~~-~~W~~v~~mp~~~~~~~~~~~~~~~~~~~~~~I~~~~~~~~~~~l~~YD~~t~  435 (468)
                      +...    ..  .|++++... .. +.+...       +   ..+......++.||+..  ...+.|..+|..++
T Consensus       183 aD~~----~~--~I~~~d~dG~~~-~v~~~~-------l---~~P~glav~~~~ly~tD--~~~~~I~~~dk~tg  238 (628)
T 4a0p_A          183 TDLD----TN--LIESSNMLGLNR-EVIADD-------L---PHPFGLTQYQDYIYWTD--WSRRSIERANKTSG  238 (628)
T ss_dssp             EETT----TT--EEEEEETTSCSC-EEEEEC-------C---SCEEEEEEETTEEEEEE--TTTTEEEEEETTTC
T ss_pred             EECC----CC--EEEEEcCCCCce-EEeecc-------C---CCceEEEEECCEEEEec--CCCCEEEEEECCCC
Confidence            7632    22  456666432 22 222110       0   01222222457787642  23567888887555

>1n7d_A LDL receptor, low-density lipoprotein receptor; familial hypercholesterolemia, cholestero metabolism, lipid transport; HET: NAG BMA MAN KEG; 3.70A {Homo sapiens} SCOP: b.68.5.1 g.3.11.1 g.3.11.1 g.3.11.1 g.12.1.1 g.12.1.1 g.12.1.1 g.12.1.1 g.12.1.1 g.12.1.1 PDB: 2lgp_A 1xfe_A 1f5y_A 1ldl_A 1ldr_A 1d2j_A 1f8z_A

Probab=85.97  E-value=1.8  Score=45.76  Aligned_cols=196  Identities=10%  Similarity=0.076  Sum_probs=92.1

Q ss_pred             eeecCceEEEEEcCCceEEEEcCCC----Cce-EecCCCCcCCcceeEEEEEEcCCCCCCCeEEEEEEe-cCcEEEEeCC
Q 012227          210 VASAGGLVCFLDIGHRNFYVCNPLT----QSF-KELPARSVKVWSRVAVGMTLNGNSTSSGYKILWVGC-DGEYEIYDSL  283 (468)
Q Consensus       210 ~~s~~GLl~~~~~~~~~~~V~NP~T----~~~-~~LP~~~~~~~~~~~~~~~~d~~~~~~~ykVv~v~~-~~~v~vy~s~  283 (468)
                      +...+|.|++.+....+++++++.+    ... ..+.. ...    ...++.+|  ..  ..+||+... ...+.+++..
T Consensus       413 ~d~~~~~Ly~sD~~~~~I~~~~~~g~~~~~~~~~~i~~-~~~----~P~glavD--~~--~g~LY~tD~~~~~I~v~d~d  483 (699)
T 1n7d_A          413 TEVASNRIYWSDLSQRMICSTQLDRAHGVSSYDTVISR-DIQ----APDGLAVD--WI--HSNIYWTDSVLGTVSVADTK  483 (699)
T ss_dssp             EETTTTEEEECCTTTTSBEEEESCCCCC-CCCCCBCCS-CC------CCCEECC--CS--SSBCEECCTTTSCEEEEBSS
T ss_pred             cccccCeEEEEecCCCeEEEEecCCCCCCcceEEEEeC-CCC----CcceEEEE--ee--CCcEEEEeccCCeEEEEecC
Confidence            4445778888776666788888765    111 11111 010    11233333  11  134554432 2347788766


Q ss_pred             CCCccCCCCCCCCcccCcccccccceEEE---CCEEEEEEcCC-CeEEEEECCCCeEEEeecCCCCCCCCceEEEE--CC
Q 012227          284 RNSWTRPGSMPSNIKLPVSLNFRSQAVSV---DGILYFMRSDP-EGIVSYNMVTGVWKQFIIPTPLHLNDHTLAEC--GG  357 (468)
Q Consensus       284 t~~W~~~~~~p~~~~~~~~~~~~~~~v~~---~G~lY~~~~~~-~~i~~fD~~~~~w~~i~~P~p~~~~~~~l~~~--~G  357 (468)
                      ...-+.+..  ....       ...++.+   +|.|||..... ..|..+++....-..+ +.... ..-..|+..  ++
T Consensus       484 g~~~~~l~~--~~~~-------~P~giavDp~~g~ly~td~~~~~~I~~~~~dG~~~~~l-~~~~l-~~PnGlavd~~~~  552 (699)
T 1n7d_A          484 GVKRKTLFR--EQGS-------KPRAIVVDPVHGFMYWTDWGTPAKIKKGGLNGVDIYSL-VTENI-QWPNGITLDLLSG  552 (699)
T ss_dssp             SCCEEEECC--CSSC-------CCCCEECCSSSSCCEECCCSSSCCEEBCCSSSCCCCEE-SCSSC-SSCCCEEECTTTC
T ss_pred             CCceEEEEe--CCCC-------CcceEEEccCCCcEEEcccCCCCeEEEEeCCCCCeeEE-EeCCC-CCccEEEEeccCC
Confidence            443222111  0111       1123334   68899976533 5788888865433332 11111 111234443  68


Q ss_pred             eEEEEEEEeeCCccEEEEEEEecCCCCeEEEEeeChhhhhcccCcceEEEEEecCCEEEEEeeeCCCCeEEEEECCCCcE
Q 012227          358 RIMLVGLLTKNAATCVCIWELQKMTLLWKEVDRMPNIWCLDFYGKHVRMTCLGNKGLLMLSLRSRQMNRLVTYNVMSREW  437 (468)
Q Consensus       358 ~L~lv~~~~~~~~~~i~Vw~ld~~~~~W~~v~~mp~~~~~~~~~~~~~~~~~~~~~~I~~~~~~~~~~~l~~YD~~t~~w  437 (468)
                      +||++...    ..  .|++++.....-..+...+..+.       .+......++.||+..  ...+.|.++|..+++.
T Consensus       553 ~LY~aD~~----~~--~I~~~d~dG~~~~~~~~~~~~~~-------~P~glavd~~~lywtd--~~~~~V~~~d~~~G~~  617 (699)
T 1n7d_A          553 RLYWVDSK----LH--SISSIDVNGGNRKTILEDEKRLA-------HPFSLAVFEDKVFWTD--IINEAIFSANRLTGSD  617 (699)
T ss_dssp             CEEEEETT----TT--EEEEECSSSSCCEEECCCSSSCS-------SCCCCEEETTEEEEEC--STTTCEEEEETTTEEE
T ss_pred             EEEEEecC----CC--eEEEEccCCCceEEEEecCCcCC-------CceEeEEECCEEEEEe--CCCCeEEEEEccCCCc
Confidence            89887632    23  45555653322222221111100       0111122356777643  3457899999887765


Q ss_pred             EEc
Q 012227          438 LKV  440 (468)
Q Consensus       438 ~~v  440 (468)
                      ..+
T Consensus       618 ~~~  620 (699)
T 1n7d_A          618 VNL  620 (699)
T ss_dssp             EEC
T ss_pred             eEE
Confidence            443

>3zwl_B Eukaryotic translation initiation factor 3 subuni; 2.20A {Saccharomyces cerevisiae}

Probab=85.92  E-value=10  Score=35.00  Aligned_cols=65  Identities=11%  Similarity=-0.014  Sum_probs=34.3

Q ss_pred             CceEEEEEcCCceEEEEcCCCCceEe-cCCCCcCCcceeEEEEEEcCCCCCCCeEEEEEEecCcEEEEeCCCCCc
Q 012227          214 GGLVCFLDIGHRNFYVCNPLTQSFKE-LPARSVKVWSRVAVGMTLNGNSTSSGYKILWVGCDGEYEIYDSLRNSW  287 (468)
Q Consensus       214 ~GLl~~~~~~~~~~~V~NP~T~~~~~-LP~~~~~~~~~~~~~~~~d~~~~~~~ykVv~v~~~~~v~vy~s~t~~W  287 (468)
                      +|-+++.......+.|||..+++... +..   ....  ...+.+.+    +.-.++..+.++.+.+||..++.-
T Consensus        43 ~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~---h~~~--v~~~~~~~----~~~~l~s~~~dg~i~iwd~~~~~~  108 (369)
T 3zwl_B           43 EGDLLFSCSKDSSASVWYSLNGERLGTLDG---HTGT--IWSIDVDC----FTKYCVTGSADYSIKLWDVSNGQC  108 (369)
T ss_dssp             TSCEEEEEESSSCEEEEETTTCCEEEEECC---CSSC--EEEEEECT----TSSEEEEEETTTEEEEEETTTCCE
T ss_pred             CCCEEEEEeCCCEEEEEeCCCchhhhhhhh---cCCc--EEEEEEcC----CCCEEEEEeCCCeEEEEECCCCcE
Confidence            44334444344578899988776543 222   1111  22333331    122444445566799999877653

>1nir_A Nitrite reductase; hemoprotein, denitrification, domain swapping; HET: HEC DHE; 2.15A {Pseudomonas aeruginosa} SCOP: a.3.1.2 b.70.2.1 PDB: 1bl9_A* 1n15_A* 1n50_A* 1n90_A* 1gjq_A* 1nno_A* 1hzv_A* 1hzu_A*

Probab=85.90  E-value=27  Score=35.23  Aligned_cols=191  Identities=11%  Similarity=0.047  Sum_probs=92.6

Q ss_pred             CceEEEEEcCCceEEEEcCCCCceE-ecCCCCcCCcceeEEEEEEcCCCCCCCeEEEEEEecCcEEEEeC--CCCCccCC
Q 012227          214 GGLVCFLDIGHRNFYVCNPLTQSFK-ELPARSVKVWSRVAVGMTLNGNSTSSGYKILWVGCDGEYEIYDS--LRNSWTRP  290 (468)
Q Consensus       214 ~GLl~~~~~~~~~~~V~NP~T~~~~-~LP~~~~~~~~~~~~~~~~d~~~~~~~ykVv~v~~~~~v~vy~s--~t~~W~~~  290 (468)
                      +|.+++.......+.|+|+.|++.. .++.. .   .  ..++.+++    +.-.+++.+.++.+.+||.  .+++-  +
T Consensus       148 ~~~~~vs~~~d~~V~v~D~~t~~~~~~i~~g-~---~--~~~v~~sp----dg~~l~v~~~d~~V~v~D~~~~t~~~--~  215 (543)
T 1nir_A          148 PNLFSVTLRDAGQIALVDGDSKKIVKVIDTG-Y---A--VHISRMSA----SGRYLLVIGRDARIDMIDLWAKEPTK--V  215 (543)
T ss_dssp             GGEEEEEEGGGTEEEEEETTTCCEEEEEECS-T---T--EEEEEECT----TSCEEEEEETTSEEEEEETTSSSCEE--E
T ss_pred             CCEEEEEEcCCCeEEEEECCCceEEEEEecC-c---c--cceEEECC----CCCEEEEECCCCeEEEEECcCCCCcE--E
Confidence            5666666666668999999998764 33321 1   1  12333332    2235565666667999998  54331  1


Q ss_pred             CCCCCCcccCcccccccceEEE------CC-EEEEEEcCCCeEEEEECCCCeEEEeecCCCC---C-----CC-C-ceEE
Q 012227          291 GSMPSNIKLPVSLNFRSQAVSV------DG-ILYFMRSDPEGIVSYNMVTGVWKQFIIPTPL---H-----LN-D-HTLA  353 (468)
Q Consensus       291 ~~~p~~~~~~~~~~~~~~~v~~------~G-~lY~~~~~~~~i~~fD~~~~~w~~i~~P~p~---~-----~~-~-~~l~  353 (468)
                      ..++...        ....+.+      +| .+|+.......|..+|..+.+-... ++...   .     .. . ..++
T Consensus       216 ~~i~~g~--------~p~~va~sp~~~~dg~~l~v~~~~~~~v~v~D~~t~~~~~~-i~~~g~~~~~~~~~~~~~v~~i~  286 (543)
T 1nir_A          216 AEIKIGI--------EARSVESSKFKGYEDRYTIAGAYWPPQFAIMDGETLEPKQI-VSTRGMTVDTQTYHPEPRVAAII  286 (543)
T ss_dssp             EEEECCS--------EEEEEEECCSTTCTTTEEEEEEEESSEEEEEETTTCCEEEE-EECCEECSSSCCEESCCCEEEEE
T ss_pred             EEEecCC--------CcceEEeCCCcCCCCCEEEEEEccCCeEEEEecccccccee-ecccCcccCccccccCCceEEEE
Confidence            1111110        1112222      45 4566554456899999988765433 22210   0     00 1 1222


Q ss_pred             EE-CCeEEEEEEEeeCCccEEEEEEEecCCCCeEEEEeeChhhhhcccCcceEEEEEe-cCCEEEEEeeeCCCCeEEEEE
Q 012227          354 EC-GGRIMLVGLLTKNAATCVCIWELQKMTLLWKEVDRMPNIWCLDFYGKHVRMTCLG-NKGLLMLSLRSRQMNRLVTYN  431 (468)
Q Consensus       354 ~~-~G~L~lv~~~~~~~~~~i~Vw~ld~~~~~W~~v~~mp~~~~~~~~~~~~~~~~~~-~~~~I~~~~~~~~~~~l~~YD  431 (468)
                      .. +|..+++...   ....+.+|.++..+..  .+..++...+   .    .-..+. .+..+|+..  ...+.+.++|
T Consensus       287 ~s~~~~~~~vs~~---~~g~i~vvd~~~~~~l--~~~~i~~~~~---~----~~~~~spdg~~l~va~--~~~~~v~v~D  352 (543)
T 1nir_A          287 ASHEHPEFIVNVK---ETGKVLLVNYKDIDNL--TVTSIGAAPF---L----HDGGWDSSHRYFMTAA--NNSNKVAVID  352 (543)
T ss_dssp             ECSSSSEEEEEET---TTTEEEEEECTTSSSC--EEEEEECCSS---C----CCEEECTTSCEEEEEE--GGGTEEEEEE
T ss_pred             ECCCCCEEEEEEC---CCCeEEEEEecCCCcc--eeEEeccCcC---c----cCceECCCCCEEEEEe--cCCCeEEEEE
Confidence            22 3555454432   2345555544432221  2223322111   0    112233 344455432  2346788899


Q ss_pred             CCCCcEEE
Q 012227          432 VMSREWLK  439 (468)
Q Consensus       432 ~~t~~w~~  439 (468)
                      .++++...
T Consensus       353 ~~tg~l~~  360 (543)
T 1nir_A          353 SKDRRLSA  360 (543)
T ss_dssp             TTTTEEEE
T ss_pred             CCCCeEEE
Confidence            99987654

>1yfq_A Cell cycle arrest protein BUB3; WD repeat WD40 repeat beta transducin repeat all beta, signaling protein; 1.10A {Saccharomyces cerevisiae} SCOP: b.69.4.2 PDB: 1u4c_A 2i3s_A 2i3t_A

Probab=85.82  E-value=21  Score=32.62  Aligned_cols=146  Identities=7%  Similarity=-0.034  Sum_probs=72.4

Q ss_pred             Cce-EEEEEcCCceEEEEcC-CCCceEecCCCCcCCcceeEEEEEEcCCCCCCCeEEEEEEecCcEEEEeCCCCC-----
Q 012227          214 GGL-VCFLDIGHRNFYVCNP-LTQSFKELPARSVKVWSRVAVGMTLNGNSTSSGYKILWVGCDGEYEIYDSLRNS-----  286 (468)
Q Consensus       214 ~GL-l~~~~~~~~~~~V~NP-~T~~~~~LP~~~~~~~~~~~~~~~~d~~~~~~~ykVv~v~~~~~v~vy~s~t~~-----  286 (468)
                      +|- .++.......+.+||. .+++...+.... ....  ...+.+.  +   .-.++..+.++.+.+||..+..     
T Consensus        67 ~~~~~l~~~~~dg~i~~wd~~~~~~~~~~~~~~-~~~~--v~~l~~~--~---~~~l~s~~~d~~i~iwd~~~~~~~~~~  138 (342)
T 1yfq_A           67 NTDLQIYVGTVQGEILKVDLIGSPSFQALTNNE-ANLG--ICRICKY--G---DDKLIAASWDGLIEVIDPRNYGDGVIA  138 (342)
T ss_dssp             SSSEEEEEEETTSCEEEECSSSSSSEEECBSCC-CCSC--EEEEEEE--T---TTEEEEEETTSEEEEECHHHHTTBCEE
T ss_pred             CCCcEEEEEcCCCeEEEEEeccCCceEeccccC-CCCc--eEEEEeC--C---CCEEEEEcCCCeEEEEccccccccccc
Confidence            444 4444444568999999 888877665410 1111  2233333  2   2345555556679999876400     


Q ss_pred             --ccCCCCCCCCcccCcccccccceEEECCEEEEEEcCCCeEEEEECCC-Ce--EEEeecCCCCCCCCceEEEE--CCeE
Q 012227          287 --WTRPGSMPSNIKLPVSLNFRSQAVSVDGILYFMRSDPEGIVSYNMVT-GV--WKQFIIPTPLHLNDHTLAEC--GGRI  359 (468)
Q Consensus       287 --W~~~~~~p~~~~~~~~~~~~~~~v~~~G~lY~~~~~~~~i~~fD~~~-~~--w~~i~~P~p~~~~~~~l~~~--~G~L  359 (468)
                        .+.+..+...        ..-..+.+.+.-.+.+.....|..||+.+ ..  ......+...  .-..+...  +|++
T Consensus       139 ~~~~~~~~~~~~--------~~v~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~--~i~~i~~~~~~~~~  208 (342)
T 1yfq_A          139 VKNLNSNNTKVK--------NKIFTMDTNSSRLIVGMNNSQVQWFRLPLCEDDNGTIEESGLKY--QIRDVALLPKEQEG  208 (342)
T ss_dssp             EEESCSSSSSSC--------CCEEEEEECSSEEEEEESTTEEEEEESSCCTTCCCEEEECSCSS--CEEEEEECSGGGCE
T ss_pred             ccCCeeeEEeeC--------CceEEEEecCCcEEEEeCCCeEEEEECCccccccceeeecCCCC--ceeEEEECCCCCCE
Confidence              1112111100        01112333222234444556899999987 32  3332222211  11223333  4676


Q ss_pred             EEEEEEeeCCccEEEEEEEecC
Q 012227          360 MLVGLLTKNAATCVCIWELQKM  381 (468)
Q Consensus       360 ~lv~~~~~~~~~~i~Vw~ld~~  381 (468)
                      ++++..    ...+.||.++..
T Consensus       209 l~~~~~----dg~i~i~~~~~~  226 (342)
T 1yfq_A          209 YACSSI----DGRVAVEFFDDQ  226 (342)
T ss_dssp             EEEEET----TSEEEEEECCTT
T ss_pred             EEEEec----CCcEEEEEEcCC
Confidence            665542    357899988765

>2p4o_A Hypothetical protein; putative lactonase, structural genomics, joint center for ST genomics, JCSG, protein structure initiative, PSI-2; HET: MSE; 1.90A {Nostoc punctiforme} SCOP: b.68.6.3

Probab=85.32  E-value=22  Score=32.51  Aligned_cols=104  Identities=10%  Similarity=0.044  Sum_probs=58.3

Q ss_pred             cCceEEEEEcCCceEEEEcCCCCceEecCCCCcCCcceeEEEEEEcCCCCCCCeEEEEEEec-C--cEEEEeCCCCCccC
Q 012227          213 AGGLVCFLDIGHRNFYVCNPLTQSFKELPARSVKVWSRVAVGMTLNGNSTSSGYKILWVGCD-G--EYEIYDSLRNSWTR  289 (468)
Q Consensus       213 ~~GLl~~~~~~~~~~~V~NP~T~~~~~LP~~~~~~~~~~~~~~~~d~~~~~~~ykVv~v~~~-~--~v~vy~s~t~~W~~  289 (468)
                      .+|-|++.+....+++++||.++....+...      ....++.+++  .   .++++.... .  .+..|+..+++.+.
T Consensus        41 ~~g~lyv~d~~~~~I~~~d~~g~~~~~~~~~------~~p~gia~~~--d---G~l~vad~~~~~~~v~~~d~~~g~~~~  109 (306)
T 2p4o_A           41 PDGTIFVTNHEVGEIVSITPDGNQQIHATVE------GKVSGLAFTS--N---GDLVATGWNADSIPVVSLVKSDGTVET  109 (306)
T ss_dssp             TTSCEEEEETTTTEEEEECTTCCEEEEEECS------SEEEEEEECT--T---SCEEEEEECTTSCEEEEEECTTSCEEE
T ss_pred             CCCCEEEEeCCCCeEEEECCCCceEEEEeCC------CCceeEEEcC--C---CcEEEEeccCCcceEEEEcCCCCeEEE
Confidence            3677888876667899999987644333321      1234555552  1   235554432 2  26777877777654


Q ss_pred             CCCCCCCcccCcccccccceE--EECCEEEEEEcCCCeEEEEECCCCe
Q 012227          290 PGSMPSNIKLPVSLNFRSQAV--SVDGILYFMRSDPEGIVSYNMVTGV  335 (468)
Q Consensus       290 ~~~~p~~~~~~~~~~~~~~~v--~~~G~lY~~~~~~~~i~~fD~~~~~  335 (468)
                      +...+..       .+ ..++  ..++.+|+.......|..+|+.+..
T Consensus       110 ~~~~~~~-------~~-~~g~~~~~~~~~~v~d~~~g~i~~~d~~~~~  149 (306)
T 2p4o_A          110 LLTLPDA-------IF-LNGITPLSDTQYLTADSYRGAIWLIDVVQPS  149 (306)
T ss_dssp             EEECTTC-------SC-EEEEEESSSSEEEEEETTTTEEEEEETTTTE
T ss_pred             EEeCCCc-------cc-cCcccccCCCcEEEEECCCCeEEEEeCCCCc
Confidence            4322211       11 1122  2356778776555689999988653

>3s94_A LRP-6, low-density lipoprotein receptor-related protein; WNT, LDL receptor-like protein, dickko YWTD B-propeller, signaling protein; HET: NAG; 2.80A {Homo sapiens} PDB: 4dg6_A*

Probab=85.28  E-value=37  Score=35.01  Aligned_cols=187  Identities=11%  Similarity=0.105  Sum_probs=94.1

Q ss_pred             eeecCceEEEEEcCCceEEEEcCCCCc-eE-ecCCCCcCCcceeEEEEEEcCCCCCCCeEEEEEEec-CcEEEEeCCCCC
Q 012227          210 VASAGGLVCFLDIGHRNFYVCNPLTQS-FK-ELPARSVKVWSRVAVGMTLNGNSTSSGYKILWVGCD-GEYEIYDSLRNS  286 (468)
Q Consensus       210 ~~s~~GLl~~~~~~~~~~~V~NP~T~~-~~-~LP~~~~~~~~~~~~~~~~d~~~~~~~ykVv~v~~~-~~v~vy~s~t~~  286 (468)
                      +...+|.|++.+....++..+++-... .. .+.. ..    ....|+.+|  ..  .-++|+.... +.+++++.....
T Consensus        47 ~~~~~~~ly~sD~~~~~I~r~~~~g~~~~~~v~~~-~~----~~P~GlAvD--~~--~~~ly~~d~~~~~I~v~~~dG~~  117 (619)
T 3s94_A           47 FVFSHGLIYWSDVSEEAIKRTEFNKTESVQNVVVS-GL----LSPDGLACD--WL--GEKLYWTDSETNRIEVSNLDGSL  117 (619)
T ss_dssp             EETTTTEEEEEETTTTEEEEEEC-----CEEEECS-SC----SCEEEEEEE--TT--TTEEEEEETTTTEEEEEETTSCS
T ss_pred             EEeCCCEEEEEECCCCeEEEEEccCCCceEEEEeC-CC----CCcCeEEEE--ec--CCEEEEEeCCCCEEEEEECCCCC
Confidence            455689999998877789998887653 12 2222 11    123456666  21  2467766543 348888876432


Q ss_pred             ccCCCCCCCCcccCcccccccceEEE---CCEEEEEEcC-CCeEEEEECCCCeEEEeecCCCCCCCC-ceEEEE--CCeE
Q 012227          287 WTRPGSMPSNIKLPVSLNFRSQAVSV---DGILYFMRSD-PEGIVSYNMVTGVWKQFIIPTPLHLND-HTLAEC--GGRI  359 (468)
Q Consensus       287 W~~~~~~p~~~~~~~~~~~~~~~v~~---~G~lY~~~~~-~~~i~~fD~~~~~w~~i~~P~p~~~~~-~~l~~~--~G~L  359 (468)
                      =+.+..  ....       ...++++   +|.+||-... ...|..++++...-..+ ...  .... ..|+.-  +++|
T Consensus       118 ~~~l~~--~~l~-------~P~~Iavdp~~g~ly~tD~g~~~~I~r~~~dG~~~~~l-~~~--~~~~P~Glald~~~~~L  185 (619)
T 3s94_A          118 RKVLFW--QELD-------QPRAIALDPSSGFMYWTDWGEVPKIERAGMDGSSRFII-INS--EIYWPNGLTLDYEEQKL  185 (619)
T ss_dssp             CEEEEC--SSCS-------CCCCEEEETTTTEEEEEECSSSCEEEEEETTSCSCEEE-ECS--SCSSEEEEEEETTTTEE
T ss_pred             EEEEEe--CCCC-------CCceEEEecCCCeEEEeccCCCCEEEEEECCCCceEEE-EeC--CCCCCcEEEEEccCCEE
Confidence            111110  1111       1224444   6899998753 45788999876544443 111  1111 234443  6899


Q ss_pred             EEEEEEeeCCccEEEEEEEecCC-CCeEEEE-eeChhhhhcccCcceEEEEEecCCEEEEEeeeCCCCeEEEEECCCCc
Q 012227          360 MLVGLLTKNAATCVCIWELQKMT-LLWKEVD-RMPNIWCLDFYGKHVRMTCLGNKGLLMLSLRSRQMNRLVTYNVMSRE  436 (468)
Q Consensus       360 ~lv~~~~~~~~~~i~Vw~ld~~~-~~W~~v~-~mp~~~~~~~~~~~~~~~~~~~~~~I~~~~~~~~~~~l~~YD~~t~~  436 (468)
                      |++....    .  .||+++... .....+. .++           .+......++.||+.  ......|.+.|..+++
T Consensus       186 Y~aD~~~----~--~I~~~~~dG~~~~~~~~~~~~-----------~P~gi~~~~~~ly~t--d~~~~~V~~~d~~tg~  245 (619)
T 3s94_A          186 YWADAKL----N--FIHKSNLDGTNRQAVVKGSLP-----------HPFALTLFEDILYWT--DWSTHSILACNKYTGE  245 (619)
T ss_dssp             EEEETTT----C--CEEEESSSCCEEC--------------------CCCEEESSSEEEEE--CTTTCSEEEEESSSCC
T ss_pred             EEEeCCC----C--eEEEecCCCCccEEEEeCCCC-----------CceEEEEeCCEEEEe--cCCCCEEEEEECCCCc
Confidence            9875321    2  566666542 1121111 110           011112235577663  2234678888887664

>1n7d_A LDL receptor, low-density lipoprotein receptor; familial hypercholesterolemia, cholestero metabolism, lipid transport; HET: NAG BMA MAN KEG; 3.70A {Homo sapiens} SCOP: b.68.5.1 g.3.11.1 g.3.11.1 g.3.11.1 g.12.1.1 g.12.1.1 g.12.1.1 g.12.1.1 g.12.1.1 g.12.1.1 PDB: 2lgp_A 1xfe_A 1f5y_A 1ldl_A 1ldr_A 1d2j_A 1f8z_A

Probab=85.17  E-value=10  Score=39.82  Aligned_cols=148  Identities=13%  Similarity=0.144  Sum_probs=76.8

Q ss_pred             eeecCceEEEEEcCCceEEEEcCCCCceEecCCCCcCCcceeEEEEEEcCCCCCCCeEEEEEEec--CcEEEEeCCCCCc
Q 012227          210 VASAGGLVCFLDIGHRNFYVCNPLTQSFKELPARSVKVWSRVAVGMTLNGNSTSSGYKILWVGCD--GEYEIYDSLRNSW  287 (468)
Q Consensus       210 ~~s~~GLl~~~~~~~~~~~V~NP~T~~~~~LP~~~~~~~~~~~~~~~~d~~~~~~~ykVv~v~~~--~~v~vy~s~t~~W  287 (468)
                      +...+|.|++.+....++.++++-.+..+.+-......  .  .++.+|+  .  ...||+....  ..+++++.....-
T Consensus       460 vD~~~g~LY~tD~~~~~I~v~d~dg~~~~~l~~~~~~~--P--~giavDp--~--~g~ly~td~~~~~~I~~~~~dG~~~  531 (699)
T 1n7d_A          460 VDWIHSNIYWTDSVLGTVSVADTKGVKRKTLFREQGSK--P--RAIVVDP--V--HGFMYWTDWGTPAKIKKGGLNGVDI  531 (699)
T ss_dssp             CCCSSSBCEECCTTTSCEEEEBSSSCCEEEECCCSSCC--C--CCEECCS--S--SSCCEECCCSSSCCEEBCCSSSCCC
T ss_pred             EEeeCCcEEEEeccCCeEEEEecCCCceEEEEeCCCCC--c--ceEEEcc--C--CCcEEEcccCCCCeEEEEeCCCCCe
Confidence            44467778887766678999998877655543321111  1  2233441  1  1234433211  3456655432211


Q ss_pred             cCCCCCCCCcccCcccccccceEEE---CCEEEEEEcCCCeEEEEECCCCeEEEeecCCCCC-CCCceEEEECCeEEEEE
Q 012227          288 TRPGSMPSNIKLPVSLNFRSQAVSV---DGILYFMRSDPEGIVSYNMVTGVWKQFIIPTPLH-LNDHTLAECGGRIMLVG  363 (468)
Q Consensus       288 ~~~~~~p~~~~~~~~~~~~~~~v~~---~G~lY~~~~~~~~i~~fD~~~~~w~~i~~P~p~~-~~~~~l~~~~G~L~lv~  363 (468)
                      +.+..  ..+.       ...++.+   ++.|||.......|.+||+....-..+ +..... ..-..|+..++.||++.
T Consensus       532 ~~l~~--~~l~-------~PnGlavd~~~~~LY~aD~~~~~I~~~d~dG~~~~~~-~~~~~~~~~P~glavd~~~lywtd  601 (699)
T 1n7d_A          532 YSLVT--ENIQ-------WPNGITLDLLSGRLYWVDSKLHSISSIDVNGGNRKTI-LEDEKRLAHPFSLAVFEDKVFWTD  601 (699)
T ss_dssp             CEESC--SSCS-------SCCCEEECTTTCCEEEEETTTTEEEEECSSSSCCEEE-CCCSSSCSSCCCCEEETTEEEEEC
T ss_pred             eEEEe--CCCC-------CccEEEEeccCCEEEEEecCCCeEEEEccCCCceEEE-EecCCcCCCceEeEEECCEEEEEe
Confidence            11100  0111       1234555   489999998778899999976544443 221111 12234566788888876


Q ss_pred             EEeeCCccEEEEEEEecC
Q 012227          364 LLTKNAATCVCIWELQKM  381 (468)
Q Consensus       364 ~~~~~~~~~i~Vw~ld~~  381 (468)
                      ...    .  .|++++..
T Consensus       602 ~~~----~--~V~~~d~~  613 (699)
T 1n7d_A          602 IIN----E--AIFSANRL  613 (699)
T ss_dssp             STT----T--CEEEEETT
T ss_pred             CCC----C--eEEEEEcc
Confidence            211    2  56666653

>2dg1_A DRP35, lactonase; beta propeller, hydrolase; 1.72A {Staphylococcus aureus} SCOP: b.68.6.1 PDB: 2dg0_A 2dso_A

Probab=85.12  E-value=23  Score=32.47  Aligned_cols=200  Identities=12%  Similarity=0.122  Sum_probs=97.7

Q ss_pred             ecCceEEEEEcCCceEEEEcCCCCceEecCCCCcCCcceeEEEEEEcCCCCCCCeEEEEEEec-----CcEEEEeCCCCC
Q 012227          212 SAGGLVCFLDIGHRNFYVCNPLTQSFKELPARSVKVWSRVAVGMTLNGNSTSSGYKILWVGCD-----GEYEIYDSLRNS  286 (468)
Q Consensus       212 s~~GLl~~~~~~~~~~~V~NP~T~~~~~LP~~~~~~~~~~~~~~~~d~~~~~~~ykVv~v~~~-----~~v~vy~s~t~~  286 (468)
                      +.+|-|++.+.....++++|+.+++...+.....    ....++..++  .   .++++....     ..+.+||..++.
T Consensus        53 ~~~g~l~~~~~~~~~i~~~d~~~~~~~~~~~~~~----~~~~~i~~~~--d---g~l~v~~~~~~~~~~~i~~~d~~~~~  123 (333)
T 2dg1_A           53 DRQGQLFLLDVFEGNIFKINPETKEIKRPFVSHK----ANPAAIKIHK--D---GRLFVCYLGDFKSTGGIFAATENGDN  123 (333)
T ss_dssp             CTTSCEEEEETTTCEEEEECTTTCCEEEEEECSS----SSEEEEEECT--T---SCEEEEECTTSSSCCEEEEECTTSCS
T ss_pred             CCCCCEEEEECCCCEEEEEeCCCCcEEEEeeCCC----CCcceEEECC--C---CcEEEEeCCCCCCCceEEEEeCCCCE
Confidence            3567677666555689999999998776532111    1123444442  1   245544433     358889887765


Q ss_pred             ccCC-CCCCCCcccCcccccccceEEE--CCEEEEEEcC------CCeEEEEECCCCeEEEeecCCCCCCCCceEEEE-C
Q 012227          287 WTRP-GSMPSNIKLPVSLNFRSQAVSV--DGILYFMRSD------PEGIVSYNMVTGVWKQFIIPTPLHLNDHTLAEC-G  356 (468)
Q Consensus       287 W~~~-~~~p~~~~~~~~~~~~~~~v~~--~G~lY~~~~~------~~~i~~fD~~~~~w~~i~~P~p~~~~~~~l~~~-~  356 (468)
                      -+.. ......       . ....+.+  +|.+|+....      ...|..+|+.+++...+....   .....++.. +
T Consensus       124 ~~~~~~~~~~~-------~-~~~~i~~d~~g~l~v~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~---~~~~~i~~~~d  192 (333)
T 2dg1_A          124 LQDIIEDLSTA-------Y-CIDDMVFDSKGGFYFTDFRGYSTNPLGGVYYVSPDFRTVTPIIQNI---SVANGIALSTD  192 (333)
T ss_dssp             CEEEECSSSSC-------C-CEEEEEECTTSCEEEEECCCBTTBCCEEEEEECTTSCCEEEEEEEE---SSEEEEEECTT
T ss_pred             EEEEEccCccC-------C-cccceEECCCCCEEEEeccccccCCCceEEEEeCCCCEEEEeecCC---CcccceEECCC
Confidence            4311 110000       0 1112333  6888776542      246888998877665542110   011123222 5


Q ss_pred             Ce-EEEEEEEeeCCccEEEEEEEecCCCCeEEEE-eeChhhhhcccCc-ceEEEEEecCCEEEEEeeeCCCCeEEEEECC
Q 012227          357 GR-IMLVGLLTKNAATCVCIWELQKMTLLWKEVD-RMPNIWCLDFYGK-HVRMTCLGNKGLLMLSLRSRQMNRLVTYNVM  433 (468)
Q Consensus       357 G~-L~lv~~~~~~~~~~i~Vw~ld~~~~~W~~v~-~mp~~~~~~~~~~-~~~~~~~~~~~~I~~~~~~~~~~~l~~YD~~  433 (468)
                      |+ ||+...    ....+.+|.++.......... ....    .+.+. ...-.++..+|.||+...  ..+.|.+||++
T Consensus       193 g~~l~v~~~----~~~~i~~~d~~~~g~~~~~~~~~~~~----~~~~~~~~~~i~~d~~G~l~v~~~--~~~~v~~~d~~  262 (333)
T 2dg1_A          193 EKVLWVTET----TANRLHRIALEDDGVTIQPFGATIPY----YFTGHEGPDSCCIDSDDNLYVAMY--GQGRVLVFNKR  262 (333)
T ss_dssp             SSEEEEEEG----GGTEEEEEEECTTSSSEEEEEEEEEE----ECCSSSEEEEEEEBTTCCEEEEEE--TTTEEEEECTT
T ss_pred             CCEEEEEeC----CCCeEEEEEecCCCcCcccccceEEE----ecCCCCCCCceEECCCCCEEEEEc--CCCEEEEECCC
Confidence            65 665431    123455555543223333221 1100    00010 011234445667776432  23579999997


Q ss_pred             CCcEEEcc
Q 012227          434 SREWLKVP  441 (468)
Q Consensus       434 t~~w~~v~  441 (468)
                      .+....+.
T Consensus       263 g~~~~~~~  270 (333)
T 2dg1_A          263 GYPIGQIL  270 (333)
T ss_dssp             SCEEEEEE
T ss_pred             CCEEEEEE
Confidence            66665553

>1npe_A Nidogen, entactin; glycoprotein, basement membrane, beta-propeller, EGF-like, structural protein; 2.30A {Mus musculus} SCOP: b.68.5.1

Probab=84.85  E-value=21  Score=31.79  Aligned_cols=155  Identities=10%  Similarity=0.092  Sum_probs=82.7

Q ss_pred             eeecCceEEEEEcCCceEEEEcCCCCceEecCCCCcCCcceeEEEEEEcCCCCCCCeEEEEEEec---CcEEEEeCCCCC
Q 012227          210 VASAGGLVCFLDIGHRNFYVCNPLTQSFKELPARSVKVWSRVAVGMTLNGNSTSSGYKILWVGCD---GEYEIYDSLRNS  286 (468)
Q Consensus       210 ~~s~~GLl~~~~~~~~~~~V~NP~T~~~~~LP~~~~~~~~~~~~~~~~d~~~~~~~ykVv~v~~~---~~v~vy~s~t~~  286 (468)
                      +...+|.|++.+....++.++|+-......+-.....    ...++.+|+    ..-++++....   ..+.+++.....
T Consensus        86 ~d~~~~~lyv~d~~~~~I~~~~~~g~~~~~~~~~~~~----~P~~i~vd~----~~g~lyv~~~~~~~~~I~~~~~dg~~  157 (267)
T 1npe_A           86 LDHLGRTIFWTDSQLDRIEVAKMDGTQRRVLFDTGLV----NPRGIVTDP----VRGNLYWTDWNRDNPKIETSHMDGTN  157 (267)
T ss_dssp             EETTTTEEEEEETTTTEEEEEETTSCSCEEEECSSCS----SEEEEEEET----TTTEEEEEECCSSSCEEEEEETTSCC
T ss_pred             EEecCCeEEEEECCCCEEEEEEcCCCCEEEEEECCCC----CccEEEEee----CCCEEEEEECCCCCcEEEEEecCCCC
Confidence            5556788998887777899999875543333221111    123455552    12456655432   347777764322


Q ss_pred             ccCCCCCCCCcccCcccccccceEEE---CCEEEEEEcCCCeEEEEECCCCeEEEeecCCCCCCCCceEEEECCeEEEEE
Q 012227          287 WTRPGSMPSNIKLPVSLNFRSQAVSV---DGILYFMRSDPEGIVSYNMVTGVWKQFIIPTPLHLNDHTLAECGGRIMLVG  363 (468)
Q Consensus       287 W~~~~~~p~~~~~~~~~~~~~~~v~~---~G~lY~~~~~~~~i~~fD~~~~~w~~i~~P~p~~~~~~~l~~~~G~L~lv~  363 (468)
                      -+.+..  ....       ...++.+   ++.+||.....+.|.+||+.+..-..+ .+..  ..-..++.-+|.||++.
T Consensus       158 ~~~~~~--~~~~-------~P~gia~d~~~~~lyv~d~~~~~I~~~~~~g~~~~~~-~~~~--~~P~gi~~d~~~lyva~  225 (267)
T 1npe_A          158 RRILAQ--DNLG-------LPNGLTFDAFSSQLCWVDAGTHRAECLNPAQPGRRKV-LEGL--QYPFAVTSYGKNLYYTD  225 (267)
T ss_dssp             CEEEEC--TTCS-------CEEEEEEETTTTEEEEEETTTTEEEEEETTEEEEEEE-EECC--CSEEEEEEETTEEEEEE
T ss_pred             cEEEEE--CCCC-------CCcEEEEcCCCCEEEEEECCCCEEEEEecCCCceEEE-ecCC--CCceEEEEeCCEEEEEE
Confidence            111110  0101       1224444   579999988778999999986543333 2211  11124455688888865


Q ss_pred             EEeeCCccEEEEEEEecCCCCeEEEEeeC
Q 012227          364 LLTKNAATCVCIWELQKMTLLWKEVDRMP  392 (468)
Q Consensus       364 ~~~~~~~~~i~Vw~ld~~~~~W~~v~~mp  392 (468)
                      ...    .  .|++++..+  .+.+..++
T Consensus       226 ~~~----~--~v~~~d~~~--g~~~~~i~  246 (267)
T 1npe_A          226 WKT----N--SVIAMDLAI--SKEMDTFH  246 (267)
T ss_dssp             TTT----T--EEEEEETTT--TEEEEEEC
T ss_pred             CCC----C--eEEEEeCCC--CCceEEEc
Confidence            321    2  567777643  34444443

>3bg1_A Protein SEC13 homolog; NPC, transport, WD repeat, autocatalytic cleavage, mRNA transport, nuclear pore complex, nucleus, phosphoprotein; 3.00A {Homo sapiens} PDB: 3bg0_A

Probab=84.83  E-value=14  Score=33.91  Aligned_cols=115  Identities=10%  Similarity=0.044  Sum_probs=56.3

Q ss_pred             cCceEEEEEcCCceEEEEcCCCCceEecCCCCcCCcceeEEEEEEcCCCCCCCeEEEEEEecCcEEEEeCCCCCccCCCC
Q 012227          213 AGGLVCFLDIGHRNFYVCNPLTQSFKELPARSVKVWSRVAVGMTLNGNSTSSGYKILWVGCDGEYEIYDSLRNSWTRPGS  292 (468)
Q Consensus       213 ~~GLl~~~~~~~~~~~V~NP~T~~~~~LP~~~~~~~~~~~~~~~~d~~~~~~~ykVv~v~~~~~v~vy~s~t~~W~~~~~  292 (468)
                      .+|-.++.......+.|||..+++...+.....+......+.  +.  +....-.++..+.++.+.+||..++.|.....
T Consensus        23 ~~g~~lasgs~D~~v~lwd~~~~~~~~~~~l~gH~~~V~~v~--~~--~~~~~~~l~s~s~D~~v~iWd~~~~~~~~~~~   98 (316)
T 3bg1_A           23 YYGTRLATCSSDRSVKIFDVRNGGQILIADLRGHEGPVWQVA--WA--HPMYGNILASCSYDRKVIIWREENGTWEKSHE   98 (316)
T ss_dssp             GGGCEEEEEETTTEEEEEEEETTEEEEEEEEECCSSCEEEEE--EC--CGGGSSCEEEEETTSCEEEECCSSSCCCEEEE
T ss_pred             CCCCEEEEEeCCCeEEEEEecCCCcEEEEEEcCCCccEEEEE--eC--CCCCCCEEEEEECCCEEEEEECCCCcceEEEE
Confidence            345444444445678888887765432221111111222222  22  11111234444556779999998877754321


Q ss_pred             CCCCcccCcccccccceEEE--C--CEEEEEEcCCCeEEEEECCCC-eEEE
Q 012227          293 MPSNIKLPVSLNFRSQAVSV--D--GILYFMRSDPEGIVSYNMVTG-VWKQ  338 (468)
Q Consensus       293 ~p~~~~~~~~~~~~~~~v~~--~--G~lY~~~~~~~~i~~fD~~~~-~w~~  338 (468)
                      +....       ..-..+.+  +  |.+.+.+.....|..+|+.++ .|..
T Consensus        99 ~~~h~-------~~V~~v~~~p~~~g~~lasgs~D~~i~lwd~~~~~~~~~  142 (316)
T 3bg1_A           99 HAGHD-------SSVNSVCWAPHDYGLILACGSSDGAISLLTYTGEGQWEV  142 (316)
T ss_dssp             ECCCS-------SCCCEEEECCTTTCSCEEEECSSSCEEEEEECSSSCEEE
T ss_pred             ccCCC-------CceEEEEECCCCCCcEEEEEcCCCCEEEEecCCCCCcce
Confidence            11110       01112323  2  555555555567888888765 4643

>2bkl_A Prolyl endopeptidase; mechanistic study, celiac sprue, hydrolase, protease; HET: ZAH MES; 1.5A {Myxococcus xanthus}

Probab=84.50  E-value=41  Score=34.91  Aligned_cols=191  Identities=8%  Similarity=-0.002  Sum_probs=91.5

Q ss_pred             eEEEEcCCCCce--EecCCCCcCCcceeEEEEEEcCCCCCCCeEEEEEEec-C--cEEEEeCCCCCccCCCCCCCCcccC
Q 012227          226 NFYVCNPLTQSF--KELPARSVKVWSRVAVGMTLNGNSTSSGYKILWVGCD-G--EYEIYDSLRNSWTRPGSMPSNIKLP  300 (468)
Q Consensus       226 ~~~V~NP~T~~~--~~LP~~~~~~~~~~~~~~~~d~~~~~~~ykVv~v~~~-~--~v~vy~s~t~~W~~~~~~p~~~~~~  300 (468)
                      .+++++.-|++-  +.+-..+...  ....+....   ..+.+.++..... .  .+.+++..++.|+.+..-..     
T Consensus       203 ~v~~~~l~t~~~~~~lv~~~~~~~--~~~~~~~~S---pDG~~l~~~~~~~~~~~~l~~~~~~~~~~~~l~~~~~-----  272 (695)
T 2bkl_A          203 TIRYHTLGTEPSKDTVVHERTGDP--TTFLQSDLS---RDGKYLFVYILRGWSENDVYWKRPGEKDFRLLVKGVG-----  272 (695)
T ss_dssp             EEEEEETTSCGGGCEEEECCCCCT--TCEEEEEEC---TTSCCEEEEEEETTTEEEEEEECTTCSSCEEEEECSS-----
T ss_pred             EEEEEECCCCchhceEEEecCCCC--EEEEEEEEC---CCCCEEEEEEeCCCCceEEEEEcCCCCceEEeecCCC-----
Confidence            488998887762  2222111111  111233332   2234444433332 2  35555665666765532110     


Q ss_pred             cccccccceEEECCEEEEEEc---CCCeEEEEECCCCe---EEEeecCCCCCCCCceEEEECCeEEEEEEEeeCCccEEE
Q 012227          301 VSLNFRSQAVSVDGILYFMRS---DPEGIVSYNMVTGV---WKQFIIPTPLHLNDHTLAECGGRIMLVGLLTKNAATCVC  374 (468)
Q Consensus       301 ~~~~~~~~~v~~~G~lY~~~~---~~~~i~~fD~~~~~---w~~i~~P~p~~~~~~~l~~~~G~L~lv~~~~~~~~~~i~  374 (468)
                          .....+..+|.+|+.+.   ....|..+|+.+..   |..+ ++......-..+...+|.|++.....    ...+
T Consensus       273 ----~~~~~~~~~g~l~~~s~~~~~~~~l~~~d~~~~~~~~~~~l-~~~~~~~~l~~~~~~~~~lv~~~~~d----g~~~  343 (695)
T 2bkl_A          273 ----AKYEVHAWKDRFYVLTDEGAPRQRVFEVDPAKPARASWKEI-VPEDSSASLLSVSIVGGHLSLEYLKD----ATSE  343 (695)
T ss_dssp             ----CCEEEEEETTEEEEEECTTCTTCEEEEEBTTBCSGGGCEEE-ECCCSSCEEEEEEEETTEEEEEEEET----TEEE
T ss_pred             ----ceEEEEecCCcEEEEECCCCCCCEEEEEeCCCCCccCCeEE-ecCCCCCeEEEEEEECCEEEEEEEEC----CEEE
Confidence                01223335677766654   23579999997754   7776 33221111122334588887665432    3567


Q ss_pred             EEEEecCCCCeEEEEeeChhhhhcccCcceEEEEEecCCEEEEEeeeC-CCCeEEEEECCCCcEEEccC
Q 012227          375 IWELQKMTLLWKEVDRMPNIWCLDFYGKHVRMTCLGNKGLLMLSLRSR-QMNRLVTYNVMSREWLKVPG  442 (468)
Q Consensus       375 Vw~ld~~~~~W~~v~~mp~~~~~~~~~~~~~~~~~~~~~~I~~~~~~~-~~~~l~~YD~~t~~w~~v~~  442 (468)
                      ||.++....   .+..+...-.....    .+..-.+++.+++...+. ....++.||+.+++.+.+..
T Consensus       344 l~~~~~~g~---~~~~l~~~~~~~v~----~~~~s~d~~~l~~~~ss~~~P~~v~~~d~~~g~~~~l~~  405 (695)
T 2bkl_A          344 VRVATLKGK---PVRTVQLPGVGAAS----NLMGLEDLDDAYYVFTSFTTPRQIYKTSVSTGKSELWAK  405 (695)
T ss_dssp             EEEEETTCC---EEEECCCSSSSEEC----CCBSCTTCSEEEEEEEETTEEEEEEEEETTTCCEEEEEE
T ss_pred             EEEEeCCCC---eeEEecCCCCeEEE----EeecCCCCCEEEEEEcCCCCCCEEEEEECCCCcEEEEec
Confidence            888875322   22223210000000    000111345666544332 34579999999988776643

>2hes_X YDR267CP; beta-propeller, WD40 repeat, biosynthetic protein; 1.70A {Saccharomyces cerevisiae}

Probab=84.27  E-value=5.4  Score=37.18  Aligned_cols=153  Identities=14%  Similarity=0.162  Sum_probs=69.6

Q ss_pred             CceEEEEEcCCceEEEEcCCCCceEecCCCCcCCcceeEEEEEEcCCCCCCCeEEEEEEecCcEEEEeCCCC------Cc
Q 012227          214 GGLVCFLDIGHRNFYVCNPLTQSFKELPARSVKVWSRVAVGMTLNGNSTSSGYKILWVGCDGEYEIYDSLRN------SW  287 (468)
Q Consensus       214 ~GLl~~~~~~~~~~~V~NP~T~~~~~LP~~~~~~~~~~~~~~~~d~~~~~~~ykVv~v~~~~~v~vy~s~t~------~W  287 (468)
                      +|-+++.......+.+||..++.+..+.....+....  ..+.+.  +......++..+.++.+.+|+..++      .|
T Consensus       164 ~~~~l~s~s~D~~i~iW~~~~~~~~~~~~~~~h~~~v--~~~~~~--~~~~~~~l~s~s~D~~v~iw~~~~~~~~~~~~~  239 (330)
T 2hes_X          164 SEALLASSSYDDTVRIWKDYDDDWECVAVLNGHEGTV--WSSDFD--KTEGVFRLCSGSDDSTVRVWKYMGDDEDDQQEW  239 (330)
T ss_dssp             SSSEEEEEETTSCEEEEEEETTEEEEEEEECCCSSCE--EEEEEC--CSSSSCEEEEEETTSCEEEEEEEEECTTSCEEE
T ss_pred             CCCEEEEEcCCCeEEEEECCCCCeeEEEEccCCCCcE--EEEEec--CCCCeeEEEEEeCCCeEEEEEecCCCcccccee
Confidence            4555555555567899998877654433221111122  233343  2222345555455667899886533      23


Q ss_pred             cCCCCCCCCcccCcccccccceEEE-CCEEEEEEcCCCeEEEEECCCCeEEEeecCCCCCCC-CceEEEE----CCeEEE
Q 012227          288 TRPGSMPSNIKLPVSLNFRSQAVSV-DGILYFMRSDPEGIVSYNMVTGVWKQFIIPTPLHLN-DHTLAEC----GGRIML  361 (468)
Q Consensus       288 ~~~~~~p~~~~~~~~~~~~~~~v~~-~G~lY~~~~~~~~i~~fD~~~~~w~~i~~P~p~~~~-~~~l~~~----~G~L~l  361 (468)
                      .....++.....      .-..+.+ .+.+.+.++....|..||..++.|..+......+.. ....+..    +|++.+
T Consensus       240 ~~~~~~~~~h~~------~v~~v~~s~~~~l~s~~~dg~v~iw~~~~~~~~~~~~~~~~h~~~~v~~v~~~~~~~~~~la  313 (330)
T 2hes_X          240 VCEAILPDVHKR------QVYNVAWGFNGLIASVGADGVLAVYEEVDGEWKVFAKRALCHGVYEINVVKWLELNGKTILA  313 (330)
T ss_dssp             EEEEECCSCCSS------CEEEEEECTTSCEEEEETTSCEEEEEEETTEEEEEEEESCTTTTSCEEEEEEC-----CCEE
T ss_pred             EEeeeccccccc------ceEEEEEcCCCEEEEEeCCCEEEEEEcCCCceEEEeccccccccceEEEEEEecCCCceEEE
Confidence            322211110000      0111111 222333344556788899988887654221111111 1222222    455554


Q ss_pred             EEEEeeCCccEEEEEEEec
Q 012227          362 VGLLTKNAATCVCIWELQK  380 (468)
Q Consensus       362 v~~~~~~~~~~i~Vw~ld~  380 (468)
                      .+. .   ...+.||.++.
T Consensus       314 s~s-~---Dg~v~~W~~~~  328 (330)
T 2hes_X          314 TGG-D---DGIVNFWSLEK  328 (330)
T ss_dssp             EEE-T---TSEEEEEEC--
T ss_pred             Eec-C---CCcEEEEEecc
Confidence            443 2   25789997653

>3fvz_A Peptidyl-glycine alpha-amidating monooxygenase; beta propeller, lyase, peptide amidation, HG-MAD, Zn-MAD, CL PAIR of basic residues; 2.35A {Rattus norvegicus} PDB: 3fw0_A*

Probab=84.10  E-value=26  Score=32.34  Aligned_cols=121  Identities=10%  Similarity=0.087  Sum_probs=63.1

Q ss_pred             cCceEEEEEcCCceEEEEcCCCC--ceEecCCCCc----CCcceeEEEEEEcCCCCCCCeEEEEEEe--cCcEEEEeCCC
Q 012227          213 AGGLVCFLDIGHRNFYVCNPLTQ--SFKELPARSV----KVWSRVAVGMTLNGNSTSSGYKILWVGC--DGEYEIYDSLR  284 (468)
Q Consensus       213 ~~GLl~~~~~~~~~~~V~NP~T~--~~~~LP~~~~----~~~~~~~~~~~~d~~~~~~~ykVv~v~~--~~~v~vy~s~t  284 (468)
                      .+|-+++.+....++.++|+-.+  ....+.....    ........++.+++    .+..+++...  ...+.+|+...
T Consensus       100 ~~g~l~v~d~~~~~v~~~~~~g~~~~~~~~~~~~~~g~~~~~~~~P~~ia~~~----~~g~lyv~d~~~~~~I~~~~~~g  175 (329)
T 3fvz_A          100 TDGNYWVTDVALHQVFKLDPHSKEGPLLILGRSMQPGSDQNHFCQPTDVAVEP----STGAVFVSDGYCNSRIVQFSPSG  175 (329)
T ss_dssp             TTSCEEEEETTTTEEEEECTTCSSCCSEEESBTTBCCCSTTCCSSEEEEEECT----TTCCEEEEECSSCCEEEEECTTS
T ss_pred             CCCCEEEEECCCCEEEEEeCCCCeEEEEEecccCCCCCCccccCCCcEEEEeC----CCCeEEEEeCCCCCeEEEEcCCC
Confidence            46777887777778999998765  3333422100    00111234555552    1235666653  44588888543


Q ss_pred             CCccCCCCCCCC-cccCcccccccceEEE--C-CEEEEEEcCCCeEEEEECCCCeEEE
Q 012227          285 NSWTRPGSMPSN-IKLPVSLNFRSQAVSV--D-GILYFMRSDPEGIVSYNMVTGVWKQ  338 (468)
Q Consensus       285 ~~W~~~~~~p~~-~~~~~~~~~~~~~v~~--~-G~lY~~~~~~~~i~~fD~~~~~w~~  338 (468)
                      ..-..+...... ...+.... ...++.+  + |.+|+.......|..||+.++++..
T Consensus       176 ~~~~~~~~~g~~~~~~~~~~~-~p~gia~d~~~g~l~v~d~~~~~I~~~~~~~G~~~~  232 (329)
T 3fvz_A          176 KFVTQWGEESSGSSPRPGQFS-VPHSLALVPHLDQLCVADRENGRIQCFKTDTKEFVR  232 (329)
T ss_dssp             CEEEEECEECCSSSCCTTEES-CEEEEEEETTTTEEEEEETTTTEEEEEETTTCCEEE
T ss_pred             CEEEEeccCCCCCCCCCcccC-CCcEEEEECCCCEEEEEECCCCEEEEEECCCCcEEE
Confidence            221111100000 00000011 1234445  4 8999998877899999999666544

>2hqs_A Protein TOLB; TOLB, PAL, TOL, transport protein-lipoprotein complex; 1.50A {Escherichia coli} SCOP: b.68.4.1 c.51.2.1 PDB: 3iax_A 1c5k_A 2ivz_A 2w8b_B 2w8b_A 1crz_A

Probab=84.06  E-value=31  Score=33.19  Aligned_cols=183  Identities=10%  Similarity=0.076  Sum_probs=89.3

Q ss_pred             ceEEEEcCCCCceEecCCCCcCCcceeEEEEEEcCCCCCCCeEEEEEEecC---cEEEEeCCCCCccCCCCCCCCcccCc
Q 012227          225 RNFYVCNPLTQSFKELPARSVKVWSRVAVGMTLNGNSTSSGYKILWVGCDG---EYEIYDSLRNSWTRPGSMPSNIKLPV  301 (468)
Q Consensus       225 ~~~~V~NP~T~~~~~LP~~~~~~~~~~~~~~~~d~~~~~~~ykVv~v~~~~---~v~vy~s~t~~W~~~~~~p~~~~~~~  301 (468)
                      ..+++||..++..+.+....   ..  ...+.+.+    +.-+|+....+.   .+.++|..+++...+...+.      
T Consensus       159 ~~i~i~d~~g~~~~~l~~~~---~~--v~~~~~Sp----dg~~la~~s~~~~~~~i~~~d~~tg~~~~l~~~~~------  223 (415)
T 2hqs_A          159 YELRVSDYDGYNQFVVHRSP---QP--LMSPAWSP----DGSKLAYVTFESGRSALVIQTLANGAVRQVASFPR------  223 (415)
T ss_dssp             EEEEEEETTSCSCEEEEEES---SC--EEEEEECT----TSSEEEEEECTTSSCEEEEEETTTCCEEEEECCSS------
T ss_pred             ceEEEEcCCCCCCEEEeCCC---Cc--ceeeEEcC----CCCEEEEEEecCCCcEEEEEECCCCcEEEeecCCC------
Confidence            57999998776655543311   11  12233331    112444444443   58999998876654322111      


Q ss_pred             ccccccceEEE--CCE-EEEEEcC--CCeEEEEECCCCeEEEeecCCCCCCCCceEEEE--CCeEEEEEEEeeCCccEEE
Q 012227          302 SLNFRSQAVSV--DGI-LYFMRSD--PEGIVSYNMVTGVWKQFIIPTPLHLNDHTLAEC--GGRIMLVGLLTKNAATCVC  374 (468)
Q Consensus       302 ~~~~~~~~v~~--~G~-lY~~~~~--~~~i~~fD~~~~~w~~i~~P~p~~~~~~~l~~~--~G~L~lv~~~~~~~~~~i~  374 (468)
                          ....+.+  +|. |++....  ...|..+|+.+++...+. ...   ....-..+  +|+..++... .  .....
T Consensus       224 ----~~~~~~~spdg~~la~~~~~~g~~~i~~~d~~~~~~~~l~-~~~---~~~~~~~~spdg~~l~~~s~-~--~g~~~  292 (415)
T 2hqs_A          224 ----HNGAPAFSPDGSKLAFALSKTGSLNLYVMDLASGQIRQVT-DGR---SNNTEPTWFPDSQNLAFTSD-Q--AGRPQ  292 (415)
T ss_dssp             ----CEEEEEECTTSSEEEEEECTTSSCEEEEEETTTCCEEECC-CCS---SCEEEEEECTTSSEEEEEEC-T--TSSCE
T ss_pred             ----cccCEEEcCCCCEEEEEEecCCCceEEEEECCCCCEEeCc-CCC---CcccceEECCCCCEEEEEEC-C--CCCcE
Confidence                0112222  554 5545432  245889999988765441 111   11112222  6764444331 1  12346


Q ss_pred             EEEEecCCCCeEEEEeeChhhhhcccCcceEEEEEe-cCCEEEEEeeeCCCCeEEEEECCCCcEEEccC
Q 012227          375 IWELQKMTLLWKEVDRMPNIWCLDFYGKHVRMTCLG-NKGLLMLSLRSRQMNRLVTYNVMSREWLKVPG  442 (468)
Q Consensus       375 Vw~ld~~~~~W~~v~~mp~~~~~~~~~~~~~~~~~~-~~~~I~~~~~~~~~~~l~~YD~~t~~w~~v~~  442 (468)
                      ||.++..+++-..+..-         +....-..+. ++..|++.........+..+|+++++.+.+..
T Consensus       293 i~~~d~~~~~~~~l~~~---------~~~~~~~~~spdG~~l~~~~~~~g~~~i~~~d~~~~~~~~l~~  352 (415)
T 2hqs_A          293 VYKVNINGGAPQRITWE---------GSQNQDADVSSDGKFMVMVSSNGGQQHIAKQDLATGGVQVLSS  352 (415)
T ss_dssp             EEEEETTSSCCEECCCS---------SSEEEEEEECTTSSEEEEEEECSSCEEEEEEETTTCCEEECCC
T ss_pred             EEEEECCCCCEEEEecC---------CCcccCeEECCCCCEEEEEECcCCceEEEEEECCCCCEEEecC
Confidence            77777654442221110         0011112233 45556553322223579999999999887754

>3azo_A Aminopeptidase; POP family, hydrolase; 2.00A {Streptomyces morookaensis} PDB: 3azp_A 3azq_A

Probab=83.56  E-value=15  Score=37.72  Aligned_cols=114  Identities=12%  Similarity=0.028  Sum_probs=63.7

Q ss_pred             CCEEEEEEcCCC--eEEEEECCCCeEEEeecCCCCCCC-------CceEEEE-CCeEEEEEEEeeCCccEEEEEEEecCC
Q 012227          313 DGILYFMRSDPE--GIVSYNMVTGVWKQFIIPTPLHLN-------DHTLAEC-GGRIMLVGLLTKNAATCVCIWELQKMT  382 (468)
Q Consensus       313 ~G~lY~~~~~~~--~i~~fD~~~~~w~~i~~P~p~~~~-------~~~l~~~-~G~L~lv~~~~~~~~~~i~Vw~ld~~~  382 (468)
                      +|++|+......  .|..+|+.++++..+ .+......       ...++.. +|++++...    . ....||.++..+
T Consensus       252 dg~l~~~~~~~~~~~l~~~~~~~~~~~~l-~~~~~~~~~p~w~~~~~~~~~~~~~~~~~~~~----~-~~~~l~~~d~~~  325 (662)
T 3azo_A          252 DGSLIVATDRTGWWNLHRVDPATGAATQL-CRREEEFAGPLWTPGMRWFAPLANGLIAVVHG----K-GAAVLGILDPES  325 (662)
T ss_dssp             TSCEEEEECTTSSCEEEEECTTTCCEEES-SCCSSBSSCCCCSTTCCSEEECTTSCEEEEEB----S-SSCEEEEEETTT
T ss_pred             CCeEEEEECCCCCeEEEEEECCCCceeec-ccccccccCccccccCceEeEeCCCEEEEEEE----c-CccEEEEEECCC
Confidence            788888775433  688899988888765 33221110       1233433 678776543    1 456899988765


Q ss_pred             CCeEEEEeeChhhhhcccCcceEEEEEecCCEEEEEeee-CCCCeEEEEECCCCcEEEcc
Q 012227          383 LLWKEVDRMPNIWCLDFYGKHVRMTCLGNKGLLMLSLRS-RQMNRLVTYNVMSREWLKVP  441 (468)
Q Consensus       383 ~~W~~v~~mp~~~~~~~~~~~~~~~~~~~~~~I~~~~~~-~~~~~l~~YD~~t~~w~~v~  441 (468)
                      +....   +...     .+....+. ...++.+++...+ .....++.+|+++++.+.+.
T Consensus       326 ~~~~~---l~~~-----~~~~~~~~-s~~~~~~~~~~~~~~~~~~i~~~d~~~g~~~~l~  376 (662)
T 3azo_A          326 GELVD---AAGP-----WTEWAATL-TVSGTRAVGVAASPRTAYEVVELDTVTGRARTIG  376 (662)
T ss_dssp             TEEEE---CCSS-----CCEEEEEE-EEETTEEEEEEEETTEEEEEEEEETTTCCEEEEE
T ss_pred             CcEEE---ecCC-----CCeEEEEE-ecCCCEEEEEEcCCCCCCEEEEEECCCCceEEee
Confidence            54433   2211     00001111 2245655553333 23347889999999888774

>2ojh_A Uncharacterized protein ATU1656/AGR_C_3050; TOLB, 6-stranded beta-propeller, structural genomics, PSI-2; 1.85A {Agrobacterium tumefaciens str}

Probab=83.33  E-value=14  Score=32.63  Aligned_cols=184  Identities=9%  Similarity=-0.015  Sum_probs=82.4

Q ss_pred             ceEEEEcCCC-CceEecCCCCcCCcceeEEEEEEcCCCCCCCeEEEEEEe----cCcEEEEeCCCCCccCCCCCCCCccc
Q 012227          225 RNFYVCNPLT-QSFKELPARSVKVWSRVAVGMTLNGNSTSSGYKILWVGC----DGEYEIYDSLRNSWTRPGSMPSNIKL  299 (468)
Q Consensus       225 ~~~~V~NP~T-~~~~~LP~~~~~~~~~~~~~~~~d~~~~~~~ykVv~v~~----~~~v~vy~s~t~~W~~~~~~p~~~~~  299 (468)
                      ..+++||..+ ++...+...... .....+.+  .  + . .-.++....    ...+..++..++.-+.+.....    
T Consensus        62 ~~i~~~d~~~~~~~~~~~~~~~~-~~~~~~~~--s--p-d-g~~l~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~----  130 (297)
T 2ojh_A           62 GLLYRLSLAGDPSPEKVDTGFAT-ICNNDHGI--S--P-D-GALYAISDKVEFGKSAIYLLPSTGGTPRLMTKNLP----  130 (297)
T ss_dssp             TEEEEEESSSCCSCEECCCTTCC-CBCSCCEE--C--T-T-SSEEEEEECTTTSSCEEEEEETTCCCCEECCSSSS----
T ss_pred             CeEEEEeCCCCCCceEecccccc-ccccceEE--C--C-C-CCEEEEEEeCCCCcceEEEEECCCCceEEeecCCC----
Confidence            4799999999 877766543211 11111222  2  1 1 123333331    1236666666655433321110    


Q ss_pred             CcccccccceEEE--CCE-EEEEEcCCC--eEEEEECCCCeEEEeecCCCCCCCCceEEEE-CCeEEEEEEEeeCCccEE
Q 012227          300 PVSLNFRSQAVSV--DGI-LYFMRSDPE--GIVSYNMVTGVWKQFIIPTPLHLNDHTLAEC-GGRIMLVGLLTKNAATCV  373 (468)
Q Consensus       300 ~~~~~~~~~~v~~--~G~-lY~~~~~~~--~i~~fD~~~~~w~~i~~P~p~~~~~~~l~~~-~G~L~lv~~~~~~~~~~i  373 (468)
                             ...+.+  +|. +++......  .|..+|..+.....+.. ..  .....+.-. +|+..++....   ...+
T Consensus       131 -------~~~~~~spdg~~l~~~~~~~~~~~l~~~~~~~~~~~~~~~-~~--~~~~~~~~s~dg~~l~~~~~~---~~~~  197 (297)
T 2ojh_A          131 -------SYWHGWSPDGKSFTYCGIRDQVFDIYSMDIDSGVETRLTH-GE--GRNDGPDYSPDGRWIYFNSSR---TGQM  197 (297)
T ss_dssp             -------EEEEEECTTSSEEEEEEEETTEEEEEEEETTTCCEEECCC-SS--SCEEEEEECTTSSEEEEEECT---TSSC
T ss_pred             -------ccceEECCCCCEEEEEECCCCceEEEEEECCCCcceEccc-CC--CccccceECCCCCEEEEEecC---CCCc
Confidence                   011112  443 444443323  35555676666554311 11  111122222 66654444321   2356


Q ss_pred             EEEEEecCCCCeEEEEeeChhhhhcccCcceEEEEEe-cCCEEEEEeeeC--------CCCeEEEEECCCCcEEEcc
Q 012227          374 CIWELQKMTLLWKEVDRMPNIWCLDFYGKHVRMTCLG-NKGLLMLSLRSR--------QMNRLVTYNVMSREWLKVP  441 (468)
Q Consensus       374 ~Vw~ld~~~~~W~~v~~mp~~~~~~~~~~~~~~~~~~-~~~~I~~~~~~~--------~~~~l~~YD~~t~~w~~v~  441 (468)
                      .||.++........+..-..         ......+. ++..|++.....        ....++.||+++++...+.
T Consensus       198 ~i~~~~~~~~~~~~~~~~~~---------~~~~~~~s~dg~~l~~~~~~~~~~~~~~~~~~~l~~~d~~~~~~~~~~  265 (297)
T 2ojh_A          198 QIWRVRVDGSSVERITDSAY---------GDWFPHPSPSGDKVVFVSYDADVFDHPRDLDVRVQLMDMDGGNVETLF  265 (297)
T ss_dssp             EEEEEETTSSCEEECCCCSE---------EEEEEEECTTSSEEEEEEEETTCCSCCSSEEEEEEEEETTSCSCEEEE
T ss_pred             cEEEECCCCCCcEEEecCCc---------ccCCeEECCCCCEEEEEEcCCCCCcccccCceEEEEEecCCCCceeee
Confidence            89998855444433221110         01112233 445555433221        1256999999998766553

>2ynn_A Coatomer subunit beta'; protein transport, peptide binding protein, membrane traffic COPI-mediated trafficking, dilysine motifs; 1.78A {Saccharomyces cerevisiae} PDB: 2yno_A

Probab=82.81  E-value=20  Score=32.66  Aligned_cols=142  Identities=12%  Similarity=-0.005  Sum_probs=65.3

Q ss_pred             CceEEEEEcCCceEEEEcCCCCceEe-cCCCCcCCcceeEEEEEEcCCCCCCCeEEEEEEecCcEEEEeCCCCCccCCCC
Q 012227          214 GGLVCFLDIGHRNFYVCNPLTQSFKE-LPARSVKVWSRVAVGMTLNGNSTSSGYKILWVGCDGEYEIYDSLRNSWTRPGS  292 (468)
Q Consensus       214 ~GLl~~~~~~~~~~~V~NP~T~~~~~-LP~~~~~~~~~~~~~~~~d~~~~~~~ykVv~v~~~~~v~vy~s~t~~W~~~~~  292 (468)
                      +|-+++.......+.+||..+++... +..   .......+.+..+      .-.++..+.++.+.+||..++.-..  .
T Consensus        24 ~~~~l~s~~~dg~v~lWd~~~~~~~~~~~~---~~~~v~~~~~~~~------~~~l~s~s~d~~i~vwd~~~~~~~~--~   92 (304)
T 2ynn_A           24 TEPWVLTTLYSGRVELWNYETQVEVRSIQV---TETPVRAGKFIAR------KNWIIVGSDDFRIRVFNYNTGEKVV--D   92 (304)
T ss_dssp             SSSEEEEEETTSEEEEEETTTTEEEEEEEC---CSSCEEEEEEEGG------GTEEEEEETTSEEEEEETTTCCEEE--E
T ss_pred             CCCEEEEEcCCCcEEEEECCCCceeEEeec---cCCcEEEEEEeCC------CCEEEEECCCCEEEEEECCCCcEEE--E
Confidence            33333333344578888888776432 221   1111223333323      1133333445669999987764211  0


Q ss_pred             CCCCcccCcccccccceEEE--CCEEEEEEcCCCeEEEEECCCC-eEEEeecCCCCCCCCceEEEE---CCeEEEEEEEe
Q 012227          293 MPSNIKLPVSLNFRSQAVSV--DGILYFMRSDPEGIVSYNMVTG-VWKQFIIPTPLHLNDHTLAEC---GGRIMLVGLLT  366 (468)
Q Consensus       293 ~p~~~~~~~~~~~~~~~v~~--~G~lY~~~~~~~~i~~fD~~~~-~w~~i~~P~p~~~~~~~l~~~---~G~L~lv~~~~  366 (468)
                      +..+.       ..-..+.+  +|.+.+.+.....|..+|+.++ ..... +.  .+......+..   ++.+++.+.. 
T Consensus        93 ~~~h~-------~~v~~~~~~~~~~~l~sgs~D~~v~lWd~~~~~~~~~~-~~--~h~~~v~~v~~~p~~~~~l~sgs~-  161 (304)
T 2ynn_A           93 FEAHP-------DYIRSIAVHPTKPYVLSGSDDLTVKLWNWENNWALEQT-FE--GHEHFVMCVAFNPKDPSTFASGCL-  161 (304)
T ss_dssp             EECCS-------SCEEEEEECSSSSEEEEEETTSCEEEEEGGGTTEEEEE-EC--CCCSCEEEEEECTTCTTEEEEEET-
T ss_pred             EeCCC-------CcEEEEEEcCCCCEEEEECCCCeEEEEECCCCcchhhh-hc--ccCCcEEEEEECCCCCCEEEEEeC-
Confidence            00000       00112222  4555455555567888998765 32221 11  11111222232   3455554432 


Q ss_pred             eCCccEEEEEEEec
Q 012227          367 KNAATCVCIWELQK  380 (468)
Q Consensus       367 ~~~~~~i~Vw~ld~  380 (468)
                         ...+.||.+..
T Consensus       162 ---D~~v~iwd~~~  172 (304)
T 2ynn_A          162 ---DRTVKVWSLGQ  172 (304)
T ss_dssp             ---TSEEEEEETTC
T ss_pred             ---CCeEEEEECCC
Confidence               25789997654

>2ghs_A AGR_C_1268P; regucalcin, structural genomics, joint center for structural genomics, JCSG, protein structure initiative, PSI-2; 1.55A {Agrobacterium tumefaciens str} SCOP: b.68.6.1

Probab=82.67  E-value=28  Score=32.24  Aligned_cols=66  Identities=9%  Similarity=0.131  Sum_probs=42.8

Q ss_pred             CCEEEEEEcCCCeEEEEECCCCeEEEeecCCCCCCCCceEE-EECCeEEEEEEEeeCCccEEEEEEEecCCCCeEEEEe
Q 012227          313 DGILYFMRSDPEGIVSYNMVTGVWKQFIIPTPLHLNDHTLA-ECGGRIMLVGLLTKNAATCVCIWELQKMTLLWKEVDR  390 (468)
Q Consensus       313 ~G~lY~~~~~~~~i~~fD~~~~~w~~i~~P~p~~~~~~~l~-~~~G~L~lv~~~~~~~~~~i~Vw~ld~~~~~W~~v~~  390 (468)
                      ++.+||+......|..||+.+++...+..+.    .-..++ .-+|++++..  .    .  .|+.++..+++.+.+..
T Consensus        60 ~~~l~~~d~~~~~i~~~d~~~~~~~~~~~~~----~v~~i~~~~dg~l~v~~--~----~--gl~~~d~~~g~~~~~~~  126 (326)
T 2ghs_A           60 SGTAWWFNILERELHELHLASGRKTVHALPF----MGSALAKISDSKQLIAS--D----D--GLFLRDTATGVLTLHAE  126 (326)
T ss_dssp             TTEEEEEEGGGTEEEEEETTTTEEEEEECSS----CEEEEEEEETTEEEEEE--T----T--EEEEEETTTCCEEEEEC
T ss_pred             CCEEEEEECCCCEEEEEECCCCcEEEEECCC----cceEEEEeCCCeEEEEE--C----C--CEEEEECCCCcEEEEee
Confidence            3789999876678999999998877654331    112233 3478887653  1    1  36777776677666543

>4a11_B DNA excision repair protein ERCC-8; DNA binding protein, DNA damage repair; HET: DNA; 3.31A {Homo sapiens}

Probab=82.21  E-value=14  Score=34.77  Aligned_cols=98  Identities=8%  Similarity=0.110  Sum_probs=46.4

Q ss_pred             EEEEEEecCcEEEEeCCCCCccCCCCCCCCcccCcccccccceEEE-----CCEEEEEEcCCCeEEEEECCCCeEEEeec
Q 012227          267 KILWVGCDGEYEIYDSLRNSWTRPGSMPSNIKLPVSLNFRSQAVSV-----DGILYFMRSDPEGIVSYNMVTGVWKQFII  341 (468)
Q Consensus       267 kVv~v~~~~~v~vy~s~t~~W~~~~~~p~~~~~~~~~~~~~~~v~~-----~G~lY~~~~~~~~i~~fD~~~~~w~~i~~  341 (468)
                      .++..+.++.+.+||..++.-...-..+..          ...+.+     ++.+.+.+.....|..||+.+...... +
T Consensus       114 ~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~----------~~~~~~~~~~~~~~~~~~~~~~~~v~~~d~~~~~~~~~-~  182 (408)
T 4a11_B          114 MFTSSSFDKTLKVWDTNTLQTADVFNFEET----------VYSHHMSPVSTKHCLVAVGTRGPKVQLCDLKSGSCSHI-L  182 (408)
T ss_dssp             CEEEEETTSEEEEEETTTTEEEEEEECSSC----------EEEEEECSSCSSCCEEEEEESSSSEEEEESSSSCCCEE-E
T ss_pred             EEEEEeCCCeEEEeeCCCCccceeccCCCc----------eeeeEeecCCCCCcEEEEEcCCCeEEEEeCCCcceeee-e
Confidence            344444466799999887653221111100          011111     344555555556789999987653322 1


Q ss_pred             CCCCCCCCc-eEEEE-CCe-EEEEEEEeeCCccEEEEEEEecC
Q 012227          342 PTPLHLNDH-TLAEC-GGR-IMLVGLLTKNAATCVCIWELQKM  381 (468)
Q Consensus       342 P~p~~~~~~-~l~~~-~G~-L~lv~~~~~~~~~~i~Vw~ld~~  381 (468)
                      ..  +.... .+... +|. +++++..    ...+.+|.+...
T Consensus       183 ~~--~~~~v~~~~~~~~~~~ll~~~~~----dg~i~i~d~~~~  219 (408)
T 4a11_B          183 QG--HRQEILAVSWSPRYDYILATASA----DSRVKLWDVRRA  219 (408)
T ss_dssp             CC--CCSCEEEEEECSSCTTEEEEEET----TSCEEEEETTCS
T ss_pred             cC--CCCcEEEEEECCCCCcEEEEEcC----CCcEEEEECCCC
Confidence            11  11111 22222 344 4544432    246788876543

>1got_B GT-beta; complex (GTP-binding/transducer), G protein, heterotrimer signal transduction; HET: GDP; 2.00A {Bos taurus} SCOP: b.69.4.1 PDB: 1b9y_A 1b9x_A* 2trc_B 1tbg_A 1gg2_B* 1omw_B 1gp2_B 1xhm_A 2qns_A 3ah8_B* 3cik_B 3kj5_A 3krw_B* 3krx_B* 3psc_B 3pvu_B* 3pvw_B* 1a0r_B* 2bcj_B* 3sn6_B*

Probab=82.00  E-value=32  Score=31.80  Aligned_cols=143  Identities=13%  Similarity=0.157  Sum_probs=66.3

Q ss_pred             CceEEEEEcCCceEEEEcCCCCceEe-cCCCCcCCcceeEEEEEEcCCCCCCCeEEEEEEecCcEEEEeCCCCCc--cCC
Q 012227          214 GGLVCFLDIGHRNFYVCNPLTQSFKE-LPARSVKVWSRVAVGMTLNGNSTSSGYKILWVGCDGEYEIYDSLRNSW--TRP  290 (468)
Q Consensus       214 ~GLl~~~~~~~~~~~V~NP~T~~~~~-LP~~~~~~~~~~~~~~~~d~~~~~~~ykVv~v~~~~~v~vy~s~t~~W--~~~  290 (468)
                      +|-+++.......+.+||..+++... ++..   ...  ...+.+.+    ..-.++..+.++.+.+|+..++.-  +..
T Consensus        66 d~~~l~s~s~Dg~v~iWd~~~~~~~~~~~~~---~~~--v~~~~~s~----~~~~l~s~~~d~~v~iw~~~~~~~~~~~~  136 (340)
T 1got_B           66 DSRLLLSASQDGKLIIWDSYTTNKVHAIPLR---SSW--VMTCAYAP----SGNYVACGGLDNICSIYNLKTREGNVRVS  136 (340)
T ss_dssp             TSSEEEEEETTTEEEEEETTTCCEEEEEECS---SSC--EEEEEECT----TSSEEEEEETTCEEEEEETTTCSBSCEEE
T ss_pred             CCCEEEEEeCCCcEEEEECCCCCcceEeecC---Ccc--EEEEEECC----CCCEEEEEeCCCeEEEEECccCCCcceeE
Confidence            44444444445678889888776542 3321   111  22333331    122344444456799999875431  110


Q ss_pred             CCCCCCcccCcccccccceE-EECCEEEEEEcCCCeEEEEECCCCeEEEeecCCCCCCCCceEEEE--CCeEEEEEEEee
Q 012227          291 GSMPSNIKLPVSLNFRSQAV-SVDGILYFMRSDPEGIVSYNMVTGVWKQFIIPTPLHLNDHTLAEC--GGRIMLVGLLTK  367 (468)
Q Consensus       291 ~~~p~~~~~~~~~~~~~~~v-~~~G~lY~~~~~~~~i~~fD~~~~~w~~i~~P~p~~~~~~~l~~~--~G~L~lv~~~~~  367 (468)
                      ..+....      ....... .-++.+. .+.....|..+|+.+++.... +..  +.....-+..  +|++++.+..  
T Consensus       137 ~~~~~h~------~~v~~~~~~~~~~l~-s~s~d~~i~~wd~~~~~~~~~-~~~--h~~~v~~~~~~~~~~~l~sg~~--  204 (340)
T 1got_B          137 RELAGHT------GYLSCCRFLDDNQIV-TSSGDTTCALWDIETGQQTTT-FTG--HTGDVMSLSLAPDTRLFVSGAC--  204 (340)
T ss_dssp             EEEECCS------SCEEEEEEEETTEEE-EEETTSCEEEEETTTTEEEEE-ECC--CSSCEEEEEECTTSSEEEEEET--
T ss_pred             EEecCCC------ccEEEEEECCCCcEE-EEECCCcEEEEECCCCcEEEE-EcC--CCCceEEEEECCCCCEEEEEeC--
Confidence            0000000      0001111 1245543 344456789999998865432 211  1111122222  5666655432  


Q ss_pred             CCccEEEEEEEe
Q 012227          368 NAATCVCIWELQ  379 (468)
Q Consensus       368 ~~~~~i~Vw~ld  379 (468)
                        ...+.+|.+.
T Consensus       205 --d~~v~~wd~~  214 (340)
T 1got_B          205 --DASAKLWDVR  214 (340)
T ss_dssp             --TSCEEEEETT
T ss_pred             --CCcEEEEECC
Confidence              2578899554

>3ow8_A WD repeat-containing protein 61; structural genomics consortium, SGC, transcriptio; 2.30A {Homo sapiens}

Probab=81.58  E-value=32  Score=31.59  Aligned_cols=188  Identities=9%  Similarity=0.038  Sum_probs=86.7

Q ss_pred             CceEEEEEcCCceEEEEcCCCCceEe-cCCCCcCCcceeEEEEEEcCCCCCCCeEEEEEEecCcEEEEeCCCCCccCCCC
Q 012227          214 GGLVCFLDIGHRNFYVCNPLTQSFKE-LPARSVKVWSRVAVGMTLNGNSTSSGYKILWVGCDGEYEIYDSLRNSWTRPGS  292 (468)
Q Consensus       214 ~GLl~~~~~~~~~~~V~NP~T~~~~~-LP~~~~~~~~~~~~~~~~d~~~~~~~ykVv~v~~~~~v~vy~s~t~~W~~~~~  292 (468)
                      +|-+++.......+.+||..+++... +.....   ....+.  +.+    +.-.++..+.++.+.+|+..++.=...  
T Consensus        91 ~~~~l~s~s~D~~i~lWd~~~~~~~~~~~~~~~---~~~~~~--~sp----dg~~l~~g~~dg~v~i~~~~~~~~~~~--  159 (321)
T 3ow8_A           91 TLPIAASSSLDAHIRLWDLENGKQIKSIDAGPV---DAWTLA--FSP----DSQYLATGTHVGKVNIFGVESGKKEYS--  159 (321)
T ss_dssp             SSSEEEEEETTSEEEEEETTTTEEEEEEECCTT---CCCCEE--ECT----TSSEEEEECTTSEEEEEETTTCSEEEE--
T ss_pred             CCCEEEEEeCCCcEEEEECCCCCEEEEEeCCCc---cEEEEE--ECC----CCCEEEEEcCCCcEEEEEcCCCceeEE--
Confidence            44444444455678899988876543 222111   111222  221    112333333355689998876542110  


Q ss_pred             CCCCcccCcccccccceEEE--CCEEEEEEcCCCeEEEEECCCCeEEEeecCCCCCCCCc-eEEEE-CCeEEEEEEEeeC
Q 012227          293 MPSNIKLPVSLNFRSQAVSV--DGILYFMRSDPEGIVSYNMVTGVWKQFIIPTPLHLNDH-TLAEC-GGRIMLVGLLTKN  368 (468)
Q Consensus       293 ~p~~~~~~~~~~~~~~~v~~--~G~lY~~~~~~~~i~~fD~~~~~w~~i~~P~p~~~~~~-~l~~~-~G~L~lv~~~~~~  368 (468)
                      +....      . ....+.+  +|.+.+.+.....|..||+.+.+.... +..  +.... .+.-. +|++++.+.    
T Consensus       160 ~~~~~------~-~v~~~~~spdg~~lasg~~dg~i~iwd~~~~~~~~~-~~~--h~~~v~~l~~spd~~~l~s~s----  225 (321)
T 3ow8_A          160 LDTRG------K-FILSIAYSPDGKYLASGAIDGIINIFDIATGKLLHT-LEG--HAMPIRSLTFSPDSQLLVTAS----  225 (321)
T ss_dssp             EECSS------S-CEEEEEECTTSSEEEEEETTSCEEEEETTTTEEEEE-ECC--CSSCCCEEEECTTSCEEEEEC----
T ss_pred             ecCCC------c-eEEEEEECCCCCEEEEEcCCCeEEEEECCCCcEEEE-Ecc--cCCceeEEEEcCCCCEEEEEc----
Confidence            00000      0 0112222  566666666667899999998865432 221  11112 22222 666655442    


Q ss_pred             CccEEEEEEEecCCCCeEEEEeeChhhhhcccCcceEEEEEecCCEEEEEeeeCCCCeEEEEECCCCcEE
Q 012227          369 AATCVCIWELQKMTLLWKEVDRMPNIWCLDFYGKHVRMTCLGNKGLLMLSLRSRQMNRLVTYNVMSREWL  438 (468)
Q Consensus       369 ~~~~i~Vw~ld~~~~~W~~v~~mp~~~~~~~~~~~~~~~~~~~~~~I~~~~~~~~~~~l~~YD~~t~~w~  438 (468)
                      ....+.||.+..  ..  .+..+..     ..+ .+.-.++.-++..++..  ...+.+.+||+.+++..
T Consensus       226 ~dg~i~iwd~~~--~~--~~~~~~~-----h~~-~v~~~~~sp~~~~l~s~--s~D~~v~iwd~~~~~~~  283 (321)
T 3ow8_A          226 DDGYIKIYDVQH--AN--LAGTLSG-----HAS-WVLNVAFCPDDTHFVSS--SSDKSVKVWDVGTRTCV  283 (321)
T ss_dssp             TTSCEEEEETTT--CC--EEEEECC-----CSS-CEEEEEECTTSSEEEEE--ETTSCEEEEETTTTEEE
T ss_pred             CCCeEEEEECCC--cc--eeEEEcC-----CCC-ceEEEEECCCCCEEEEE--eCCCcEEEEeCCCCEEE
Confidence            235689996543  22  2222211     000 01111222233333322  23567899999887643

>3ow8_A WD repeat-containing protein 61; structural genomics consortium, SGC, transcriptio; 2.30A {Homo sapiens}

Probab=81.33  E-value=33  Score=31.52  Aligned_cols=191  Identities=9%  Similarity=0.023  Sum_probs=82.8

Q ss_pred             ceEEEEEcCCceEEEEcCCCCceEecCCCCcCCcceeEEEEEEcCCCCCCCeEEEEEEecCcEEEEeCCCCCccCC-CCC
Q 012227          215 GLVCFLDIGHRNFYVCNPLTQSFKELPARSVKVWSRVAVGMTLNGNSTSSGYKILWVGCDGEYEIYDSLRNSWTRP-GSM  293 (468)
Q Consensus       215 GLl~~~~~~~~~~~V~NP~T~~~~~LP~~~~~~~~~~~~~~~~d~~~~~~~ykVv~v~~~~~v~vy~s~t~~W~~~-~~~  293 (468)
                      |-+++.......+.|||..+++....-.+..+....  ..+.+.+    ..-.++..+.++.+.+||..++.-... ..-
T Consensus        48 ~~~l~tgs~D~~v~vW~~~~~~~~~~~~l~gh~~~v--~~~~~~~----~~~~l~s~s~D~~i~lWd~~~~~~~~~~~~~  121 (321)
T 3ow8_A           48 SETVVTGSLDDLVKVWKWRDERLDLQWSLEGHQLGV--VSVDISH----TLPIAASSSLDAHIRLWDLENGKQIKSIDAG  121 (321)
T ss_dssp             -CEEEEEETTSCEEEEEEETTEEEEEEEECCCSSCE--EEEEECS----SSSEEEEEETTSEEEEEETTTTEEEEEEECC
T ss_pred             CCEEEEEcCCCCEEEEECCCCCeeeeeeeccCCCCE--EEEEECC----CCCEEEEEeCCCcEEEEECCCCCEEEEEeCC
Confidence            434444444556778877665443221111111112  2222221    112333333456799999877642211 000


Q ss_pred             CCCcccCcccccccceEEECCEEEEEEcCCCeEEEEECCCCeEEEeecCCCCCCCCceEEEE--CCeEEEEEEEeeCCcc
Q 012227          294 PSNIKLPVSLNFRSQAVSVDGILYFMRSDPEGIVSYNMVTGVWKQFIIPTPLHLNDHTLAEC--GGRIMLVGLLTKNAAT  371 (468)
Q Consensus       294 p~~~~~~~~~~~~~~~v~~~G~lY~~~~~~~~i~~fD~~~~~w~~i~~P~p~~~~~~~l~~~--~G~L~lv~~~~~~~~~  371 (468)
                      +..        ...-...-+|...+.+.....+..||+.++.-... +...  .....-+..  +|++.+++..    ..
T Consensus       122 ~~~--------~~~~~~spdg~~l~~g~~dg~v~i~~~~~~~~~~~-~~~~--~~~v~~~~~spdg~~lasg~~----dg  186 (321)
T 3ow8_A          122 PVD--------AWTLAFSPDSQYLATGTHVGKVNIFGVESGKKEYS-LDTR--GKFILSIAYSPDGKYLASGAI----DG  186 (321)
T ss_dssp             TTC--------CCCEEECTTSSEEEEECTTSEEEEEETTTCSEEEE-EECS--SSCEEEEEECTTSSEEEEEET----TS
T ss_pred             Ccc--------EEEEEECCCCCEEEEEcCCCcEEEEEcCCCceeEE-ecCC--CceEEEEEECCCCCEEEEEcC----CC
Confidence            000        00111112556555565566788899887654332 2111  111111222  6676655432    24


Q ss_pred             EEEEEEEecCCCCeEEEEeeChhhhhcccCcceEEEEEecCCEEEEEeeeCCCCeEEEEECCCCcEE
Q 012227          372 CVCIWELQKMTLLWKEVDRMPNIWCLDFYGKHVRMTCLGNKGLLMLSLRSRQMNRLVTYNVMSREWL  438 (468)
Q Consensus       372 ~i~Vw~ld~~~~~W~~v~~mp~~~~~~~~~~~~~~~~~~~~~~I~~~~~~~~~~~l~~YD~~t~~w~  438 (468)
                      .+.||.+..  +  +.+..+...     .. .+.-.++..++.+++..  ...+.+.+||+++.+..
T Consensus       187 ~i~iwd~~~--~--~~~~~~~~h-----~~-~v~~l~~spd~~~l~s~--s~dg~i~iwd~~~~~~~  241 (321)
T 3ow8_A          187 IINIFDIAT--G--KLLHTLEGH-----AM-PIRSLTFSPDSQLLVTA--SDDGYIKIYDVQHANLA  241 (321)
T ss_dssp             CEEEEETTT--T--EEEEEECCC-----SS-CCCEEEECTTSCEEEEE--CTTSCEEEEETTTCCEE
T ss_pred             eEEEEECCC--C--cEEEEEccc-----CC-ceeEEEEcCCCCEEEEE--cCCCeEEEEECCCccee
Confidence            678885443  2  233333211     00 01112233333333322  23467888888776543

>2ad6_A Methanol dehydrogenase subunit 1; PQQ configuration, native, oxidoredu; HET: PQQ; 1.50A {Methylophilus methylotrophus} SCOP: b.70.1.1 PDB: 2ad7_A* 2ad8_A* 4aah_A* 1g72_A*

Probab=81.31  E-value=16  Score=37.40  Aligned_cols=119  Identities=13%  Similarity=0.185  Sum_probs=66.3

Q ss_pred             cceEEECCEEEEEEcCCCeEEEEEC-CCC--eEEEeecCCCCC--------CCCceEEEECCeEEEEEEEeeCCccEEEE
Q 012227          307 SQAVSVDGILYFMRSDPEGIVSYNM-VTG--VWKQFIIPTPLH--------LNDHTLAECGGRIMLVGLLTKNAATCVCI  375 (468)
Q Consensus       307 ~~~v~~~G~lY~~~~~~~~i~~fD~-~~~--~w~~i~~P~p~~--------~~~~~l~~~~G~L~lv~~~~~~~~~~i~V  375 (468)
                      ..+++.+|.+|+.......+.++|. .++  .|+.- .+....        .....++..+|+||+... .    .  .+
T Consensus        56 ~~P~v~~g~vyv~~~~~~~v~AlD~~~tG~~~W~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~v~v~~~-d----g--~l  127 (571)
T 2ad6_A           56 GAPLVIGDMMYVHSAFPNNTYALNLNDPGKIVWQHK-PKQDASTKAVMCCDVVDRGLAYGAGQIVKKQA-N----G--HL  127 (571)
T ss_dssp             SCCEEETTEEEEECSTTTCEEEEETTCTTSEEEEEC-CCCCGGGGGGCTTCSCCCCCEEETTEEEEECT-T----S--EE
T ss_pred             cccEEECCEEEEEeCCCCEEEEEeCCCCccEEEEEc-CCCCccccccccccccccccEEECCEEEEEeC-C----C--EE
Confidence            4467789999998752457999999 664  67752 322110        112345667888887532 1    1  57


Q ss_pred             EEEecCC--CCeEEEEeeChhhhhcccCcceEEEEEecCCEEEEEeeeC---CCCeEEEEECCCCcEEE
Q 012227          376 WELQKMT--LLWKEVDRMPNIWCLDFYGKHVRMTCLGNKGLLMLSLRSR---QMNRLVTYNVMSREWLK  439 (468)
Q Consensus       376 w~ld~~~--~~W~~v~~mp~~~~~~~~~~~~~~~~~~~~~~I~~~~~~~---~~~~l~~YD~~t~~w~~  439 (468)
                      +.+|..+  ..|+.-  ++.....  ....... .+ .++.||+.....   ..+.++.||.++++..+
T Consensus       128 ~alD~~tG~~~W~~~--~~~~~~~--~~~~~~P-~v-~~g~v~vg~~~~~~~~~g~v~a~D~~tG~~~W  190 (571)
T 2ad6_A          128 LALDAKTGKINWEVE--VCDPKVG--STLTQAP-FV-AKDTVLMGCSGAELGVRGAVNAFDLKTGELKW  190 (571)
T ss_dssp             EEEETTTCCEEEEEE--CCCGGGT--CBCCSCC-EE-ETTEEEEECBCGGGTCCCEEEEEETTTCCEEE
T ss_pred             EEEECCCCCEEEEec--CCCCCcc--ceeccCC-EE-ECCEEEEEecCCccCCCCEEEEEECCCCcEEE
Confidence            7777643  468653  2211000  0000111 12 267887743321   14689999999886443

>3bg1_A Protein SEC13 homolog; NPC, transport, WD repeat, autocatalytic cleavage, mRNA transport, nuclear pore complex, nucleus, phosphoprotein; 3.00A {Homo sapiens} PDB: 3bg0_A

Probab=81.13  E-value=33  Score=31.36  Aligned_cols=70  Identities=11%  Similarity=0.087  Sum_probs=35.6

Q ss_pred             ceEEEEEcCCceEEEEcCCCCceEecCCCCcCCcceeEEEEEEcCCCCCCCeEEEEEEecCcEEEEeCCCC-Ccc
Q 012227          215 GLVCFLDIGHRNFYVCNPLTQSFKELPARSVKVWSRVAVGMTLNGNSTSSGYKILWVGCDGEYEIYDSLRN-SWT  288 (468)
Q Consensus       215 GLl~~~~~~~~~~~V~NP~T~~~~~LP~~~~~~~~~~~~~~~~d~~~~~~~ykVv~v~~~~~v~vy~s~t~-~W~  288 (468)
                      |-+++.......+.+||..++++..+-....+......+.  +.  +......++..+.++.+.+|+..++ .|.
T Consensus        71 ~~~l~s~s~D~~v~iWd~~~~~~~~~~~~~~h~~~V~~v~--~~--p~~~g~~lasgs~D~~i~lwd~~~~~~~~  141 (316)
T 3bg1_A           71 GNILASCSYDRKVIIWREENGTWEKSHEHAGHDSSVNSVC--WA--PHDYGLILACGSSDGAISLLTYTGEGQWE  141 (316)
T ss_dssp             SSCEEEEETTSCEEEECCSSSCCCEEEEECCCSSCCCEEE--EC--CTTTCSCEEEECSSSCEEEEEECSSSCEE
T ss_pred             CCEEEEEECCCEEEEEECCCCcceEEEEccCCCCceEEEE--EC--CCCCCcEEEEEcCCCCEEEEecCCCCCcc
Confidence            5555555555689999998876543221111111122233  33  2111223333344567999998765 464

>1kb0_A Quinohemoprotein alcohol dehydrogenase; beta-propeller fold, cytochrome C, oxidoreductase; HET: TRO HEC PQQ; 1.44A {Comamonas testosteroni} SCOP: a.3.1.6 b.70.1.1

Probab=80.90  E-value=57  Score=33.95  Aligned_cols=116  Identities=17%  Similarity=0.191  Sum_probs=63.3

Q ss_pred             cCceEEEEEcCCceEEEEcCCCCc--eEecCCCCcCCc-----ceeEEEEEEcCCCCCCCeEEEEEEecCcEEEEeCCCC
Q 012227          213 AGGLVCFLDIGHRNFYVCNPLTQS--FKELPARSVKVW-----SRVAVGMTLNGNSTSSGYKILWVGCDGEYEIYDSLRN  285 (468)
Q Consensus       213 ~~GLl~~~~~~~~~~~V~NP~T~~--~~~LP~~~~~~~-----~~~~~~~~~d~~~~~~~ykVv~v~~~~~v~vy~s~t~  285 (468)
                      .+|.|++... ...++.+|+.|++  |+.-+.......     .....+..++      +-+|++...++.+..+|..++
T Consensus        76 ~~g~vyv~~~-~~~v~AlD~~tG~~~W~~~~~~~~~~~~~~~~~~~~~~~a~~------~~~v~v~~~dg~l~alD~~tG  148 (677)
T 1kb0_A           76 VDGIMYVSAS-WSVVHAIDTRTGNRIWTYDPQIDRSTGFKGCCDVVNRGVALW------KGKVYVGAWDGRLIALDAATG  148 (677)
T ss_dssp             ETTEEEEECG-GGCEEEEETTTTEEEEEECCCCCGGGGGGSSSCSCCCCCEEE------TTEEEEECTTSEEEEEETTTC
T ss_pred             ECCEEEEECC-CCeEEEEECCCCcEEEEEcCCCCccccccccccCCCCCceEE------CCEEEEEcCCCEEEEEECCCC
Confidence            4777777654 3468889999887  443222111000     0000111222      136666555666888888765


Q ss_pred             C--ccCCCCCCCCcccCcccccccceEEECCEEEEEEcC-----CCeEEEEECCCC--eEEEe
Q 012227          286 S--WTRPGSMPSNIKLPVSLNFRSQAVSVDGILYFMRSD-----PEGIVSYNMVTG--VWKQF  339 (468)
Q Consensus       286 ~--W~~~~~~p~~~~~~~~~~~~~~~v~~~G~lY~~~~~-----~~~i~~fD~~~~--~w~~i  339 (468)
                      +  |+.-......    ........++..+|.+|+....     ...|.+||..++  .|+.-
T Consensus       149 ~~~W~~~~~~~~~----~~~~~~~~p~v~~~~v~v~~~~~~~~~~g~v~a~D~~tG~~~W~~~  207 (677)
T 1kb0_A          149 KEVWHQNTFEGQK----GSLTITGAPRVFKGKVIIGNGGAEYGVRGYITAYDAETGERKWRWF  207 (677)
T ss_dssp             CEEEEEETTTTCC----SSCBCCSCCEEETTEEEECCBCTTTCCBCEEEEEETTTCCEEEEEE
T ss_pred             CEEeeecCCcCcC----cCcccccCcEEECCEEEEEecccccCCCCEEEEEECCCCcEEEEec
Confidence            4  8653210000    0011234566789999986542     367999999876  47654

>3mkq_A Coatomer beta'-subunit; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae} PDB: 2ynp_A

Probab=80.13  E-value=61  Score=33.87  Aligned_cols=192  Identities=11%  Similarity=0.048  Sum_probs=88.4

Q ss_pred             ecCceEEEEEcCCceEEEEcCCCCceEe-cCCCCcCCcceeEEEEEEcCCCCCCCeEEEEEEecCcEEEEeCCCCCccCC
Q 012227          212 SAGGLVCFLDIGHRNFYVCNPLTQSFKE-LPARSVKVWSRVAVGMTLNGNSTSSGYKILWVGCDGEYEIYDSLRNSWTRP  290 (468)
Q Consensus       212 s~~GLl~~~~~~~~~~~V~NP~T~~~~~-LP~~~~~~~~~~~~~~~~d~~~~~~~ykVv~v~~~~~v~vy~s~t~~W~~~  290 (468)
                      +.+|-.++.......+.|||..+++... +...   ....  ..+.+.+   . .-.++..+.++.+.+|+..++ |...
T Consensus        64 s~~~~~l~~~~~dg~i~vw~~~~~~~~~~~~~~---~~~v--~~~~~s~---~-~~~l~~~~~dg~i~vw~~~~~-~~~~  133 (814)
T 3mkq_A           64 IARKNWIIVGSDDFRIRVFNYNTGEKVVDFEAH---PDYI--RSIAVHP---T-KPYVLSGSDDLTVKLWNWENN-WALE  133 (814)
T ss_dssp             EGGGTEEEEEETTSEEEEEETTTCCEEEEEECC---SSCE--EEEEECS---S-SSEEEEEETTSEEEEEEGGGT-SEEE
T ss_pred             eCCCCEEEEEeCCCeEEEEECCCCcEEEEEecC---CCCE--EEEEEeC---C-CCEEEEEcCCCEEEEEECCCC-ceEE
Confidence            3345444444445689999998887653 3221   1112  2233331   1 123444444567999998765 2211


Q ss_pred             CCCCCCcccCcccccccceEEE---CCEEEEEEcCCCeEEEEECCCCeEEEeecCCCCCCCCceEEEE----CCeEEEEE
Q 012227          291 GSMPSNIKLPVSLNFRSQAVSV---DGILYFMRSDPEGIVSYNMVTGVWKQFIIPTPLHLNDHTLAEC----GGRIMLVG  363 (468)
Q Consensus       291 ~~~p~~~~~~~~~~~~~~~v~~---~G~lY~~~~~~~~i~~fD~~~~~w~~i~~P~p~~~~~~~l~~~----~G~L~lv~  363 (468)
                      ..+...       ...-..+.+   +|...+.+.....|..||+.+..-... ...... .....+.+    +|.+.+++
T Consensus       134 ~~~~~~-------~~~v~~~~~~p~~~~~l~~~~~dg~v~vwd~~~~~~~~~-~~~~~~-~~v~~~~~~~~~~~~~l~~~  204 (814)
T 3mkq_A          134 QTFEGH-------EHFVMCVAFNPKDPSTFASGCLDRTVKVWSLGQSTPNFT-LTTGQE-RGVNYVDYYPLPDKPYMITA  204 (814)
T ss_dssp             EEEECC-------SSCEEEEEEETTEEEEEEEEETTSEEEEEETTCSSCSEE-EECCCT-TCCCEEEECCSTTCCEEEEE
T ss_pred             EEEcCC-------CCcEEEEEEEcCCCCEEEEEeCCCeEEEEECCCCcceeE-EecCCC-CCEEEEEEEECCCCCEEEEE
Confidence            111000       001112222   455666666667899999876543221 111111 11222333    66666554


Q ss_pred             EEeeCCccEEEEEEEecCCCCeEEEEeeChhhhhcccCcceEEEEEe-cCCEEEEEeeeCCCCeEEEEECCCCcEEE
Q 012227          364 LLTKNAATCVCIWELQKMTLLWKEVDRMPNIWCLDFYGKHVRMTCLG-NKGLLMLSLRSRQMNRLVTYNVMSREWLK  439 (468)
Q Consensus       364 ~~~~~~~~~i~Vw~ld~~~~~W~~v~~mp~~~~~~~~~~~~~~~~~~-~~~~I~~~~~~~~~~~l~~YD~~t~~w~~  439 (468)
                      .    ....+.+|.+...    ..+..+...     .+ .+...++. .+..|+. .  ...+.+.+||+.+++...
T Consensus       205 ~----~dg~i~~~d~~~~----~~~~~~~~~-----~~-~v~~~~~~~~~~~l~~-~--~~dg~v~vwd~~~~~~~~  264 (814)
T 3mkq_A          205 S----DDLTIKIWDYQTK----SCVATLEGH-----MS-NVSFAVFHPTLPIIIS-G--SEDGTLKIWNSSTYKVEK  264 (814)
T ss_dssp             C----TTSEEEEEETTTT----EEEEEEECC-----SS-CEEEEEECSSSSEEEE-E--ETTSCEEEEETTTCSEEE
T ss_pred             e----CCCEEEEEECCCC----cEEEEEcCC-----CC-CEEEEEEcCCCCEEEE-E--eCCCeEEEEECCCCcEEE
Confidence            3    2357888855432    222222110     00 11122233 3334432 2  234678899998865443

>2ghs_A AGR_C_1268P; regucalcin, structural genomics, joint center for structural genomics, JCSG, protein structure initiative, PSI-2; 1.55A {Agrobacterium tumefaciens str} SCOP: b.68.6.1

Probab=80.03  E-value=37  Score=31.31  Aligned_cols=108  Identities=18%  Similarity=0.155  Sum_probs=57.3

Q ss_pred             cCceEEEEEcCCceEEEEcCCCCceEecCCCCcCCcceeEEEEEEcCCCCCCCeEEEEEEecCcEEEEeCCCCCccCCCC
Q 012227          213 AGGLVCFLDIGHRNFYVCNPLTQSFKELPARSVKVWSRVAVGMTLNGNSTSSGYKILWVGCDGEYEIYDSLRNSWTRPGS  292 (468)
Q Consensus       213 ~~GLl~~~~~~~~~~~V~NP~T~~~~~LP~~~~~~~~~~~~~~~~d~~~~~~~ykVv~v~~~~~v~vy~s~t~~W~~~~~  292 (468)
                      .+|.+++.+.....++++|+.+++...+....    ....+++.-+       .++++. ....+.+||..+++.+.+..
T Consensus        59 ~~~~l~~~d~~~~~i~~~d~~~~~~~~~~~~~----~v~~i~~~~d-------g~l~v~-~~~gl~~~d~~~g~~~~~~~  126 (326)
T 2ghs_A           59 ASGTAWWFNILERELHELHLASGRKTVHALPF----MGSALAKISD-------SKQLIA-SDDGLFLRDTATGVLTLHAE  126 (326)
T ss_dssp             TTTEEEEEEGGGTEEEEEETTTTEEEEEECSS----CEEEEEEEET-------TEEEEE-ETTEEEEEETTTCCEEEEEC
T ss_pred             CCCEEEEEECCCCEEEEEECCCCcEEEEECCC----cceEEEEeCC-------CeEEEE-ECCCEEEEECCCCcEEEEee
Confidence            34666666655568999999988776553311    1222332222       244433 34568899988887764432


Q ss_pred             CCCCcccCcccccccceEEE--CCEEEEEEcC------CCeEEEEECCCCeEEEe
Q 012227          293 MPSNIKLPVSLNFRSQAVSV--DGILYFMRSD------PEGIVSYNMVTGVWKQF  339 (468)
Q Consensus       293 ~p~~~~~~~~~~~~~~~v~~--~G~lY~~~~~------~~~i~~fD~~~~~w~~i  339 (468)
                      .+...  +.  . ....+.+  +|.+|+-...      ...|..||  +++...+
T Consensus       127 ~~~~~--~~--~-~~~~i~~d~~G~l~v~~~~~~~~~~~~~l~~~~--~g~~~~~  174 (326)
T 2ghs_A          127 LESDL--PG--N-RSNDGRMHPSGALWIGTMGRKAETGAGSIYHVA--KGKVTKL  174 (326)
T ss_dssp             SSTTC--TT--E-EEEEEEECTTSCEEEEEEETTCCTTCEEEEEEE--TTEEEEE
T ss_pred             CCCCC--CC--C-CCCCEEECCCCCEEEEeCCCcCCCCceEEEEEe--CCcEEEe
Confidence            21110  00  0 1112223  6787765431      24688888  5666544

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

ID	Length	Definition	E-value
Query	468
d1fs1a1	41	a.158.1.1 (A:109-149) Skp2 {Human (Homo sapiens) [	1e-04

>d1fs1a1 a.158.1.1 (A:109-149) Skp2 {Human (Homo sapiens) [TaxId: 9606]} Length = 41

class: All alpha proteins
fold: F-box domain
superfamily: F-box domain
family: F-box domain
domain: Skp2
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 37.0 bits (86), Expect = 1e-04
 Identities = 9/40 (22%), Positives = 17/40 (42%)

Query: 119 WKEFPEDLYEAVIARLPIATFFRFRSVCQKWNSLLKSHSF 158
           W   P++L   + + L +    +   VC++W  L    S 
Sbjct: 1   WDSLPDELLLGIFSCLCLPELLKVSGVCKRWYRLASDESL 40

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	468
d1zgka1	288	Kelch-like ECH-associated protein 1, KEAP1 {Human	99.64
d1zgka1	288	Kelch-like ECH-associated protein 1, KEAP1 {Human	99.47
d1k3ia3	387	Galactose oxidase, central domain {Fungi (Fusarium	99.19
d1fs1a1	41	Skp2 {Human (Homo sapiens) [TaxId: 9606]}	99.13
d1k3ia3	387	Galactose oxidase, central domain {Fungi (Fusarium	98.91
d2ovrb1	102	F-box/WD repeat-containing protein 7, FBXW7 {Human	98.3
d1nexb1	100	Cdc4 F-box and linker domains {Baker's yeast (Sacc	98.3
d1p22a1	118	F-box/WD-repeat protein 1 (beta-TRCP1) {Human (Hom	97.9
d1q7fa_	279	Brain tumor cg10719-pa {Fruit fly (Drosophila mela	95.73
d2ghsa1	295	Regucalcin {Agrobacterium tumefaciens [TaxId: 358]	94.02
d2ghsa1	295	Regucalcin {Agrobacterium tumefaciens [TaxId: 358]	92.46
d1qksa2	432	C-terminal (heme d1) domain of cytochrome cd1-nitr	90.53
d1ijqa1	266	Low density lipoprotein (LDL) receptor {Human (Hom	89.76
d2ovrb2	342	F-box/WD repeat-containing protein 7, FBXW7 {Human	88.12
d2dg1a1	319	Lactonase Drp35 {Staphylococcus aureus [TaxId: 128	86.47
d1pjxa_	314	Diisopropylfluorophosphatase (phosphotriesterase,	85.85
d1erja_	388	Tup1, C-terminal domain {Baker's yeast (Saccharomy	84.48
d1nr0a1	311	Actin interacting protein 1 {Nematode (Caenorhabdi	83.76
d1nr0a2	299	Actin interacting protein 1 {Nematode (Caenorhabdi	83.17
d1kb0a2	573	Quinoprotein alcohol dehydrogenase, N-terminal dom	82.72
d1erja_	388	Tup1, C-terminal domain {Baker's yeast (Saccharomy	82.61
d1l0qa2	301	Surface layer protein {Archaeon Methanosarcina maz	82.25
d1npea_	263	Nidogen {Mouse (Mus musculus) [TaxId: 10090]}	81.99
d1qfma1	430	Prolyl oligopeptidase, N-terminal domain {Pig (Sus	81.0
d1k8kc_	371	Arp2/3 complex 41 kDa subunit ARPC1 {Cow (Bos taur	80.97
d2ad6a1	571	Methanol dehydrogenase, heavy chain {Methylophilus	80.71

>d1zgka1 b.68.11.1 (A:322-609) Kelch-like ECH-associated protein 1, KEAP1 {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: Kelch motif
family: Kelch motif
domain: Kelch-like ECH-associated protein 1, KEAP1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.64  E-value=2e-14  Score=134.27  Aligned_cols=239  Identities=15%  Similarity=0.165  Sum_probs=163.2

Q ss_pred             CcceecCCCCcccCCCCCCCCCCcEEEEeeecCceEEEEEc---------CCceEEEEcCCCCceEecCCCCcCCcceeE
Q 012227          182 SGAMYDPSLKKWHHPTISSLPTKMIILPVASAGGLVCFLDI---------GHRNFYVCNPLTQSFKELPARSVKVWSRVA  252 (468)
Q Consensus       182 ~~~~~dp~~~~w~~~~l~~~p~~~~~~~~~s~~GLl~~~~~---------~~~~~~V~NP~T~~~~~LP~~~~~~~~~~~  252 (468)
                      ....||+.+++|..++  .+|..+.....+..+|-+++.++         ....++++||.|++|..+++++..+....+
T Consensus        20 ~~~~yd~~t~~W~~~~--~~p~~R~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~~~~yd~~~~~w~~~~~~p~~r~~~~~   97 (288)
T d1zgka1          20 YLEAYNPSNGTWLRLA--DLQVPRSGLAGCVVGGLLYAVGGRNNSPDGNTDSSALDCYNPMTNQWSPCAPMSVPRNRIGV   97 (288)
T ss_dssp             CEEEEETTTTEEEECC--CCSSCCBSCEEEEETTEEEEECCEEEETTEEEECCCEEEEETTTTEEEECCCCSSCCBTCEE
T ss_pred             eEEEEECCCCeEEECC--CCCCccceeEEEEECCEEEEEeCcccCCCCccccchhhhcccccccccccccccceecceec
Confidence            3568999999998653  33332211113344555555432         124689999999999999998766554332


Q ss_pred             EEEEEcCCCCCCCeEEEEEEec------CcEEEEeCCCCCccCCCCCCCCcccCcccccccceEEECCEEEEEEcC----
Q 012227          253 VGMTLNGNSTSSGYKILWVGCD------GEYEIYDSLRNSWTRPGSMPSNIKLPVSLNFRSQAVSVDGILYFMRSD----  322 (468)
Q Consensus       253 ~~~~~d~~~~~~~ykVv~v~~~------~~v~vy~s~t~~W~~~~~~p~~~~~~~~~~~~~~~v~~~G~lY~~~~~----  322 (468)
                        ...+       -|++++++.      ..+++|+..++.|.....++..       +.....+..++.+|.+++.    
T Consensus        98 --~~~~-------~~i~~~gg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-------r~~~~~~~~~~~~~~~GG~~~~~  161 (288)
T d1zgka1          98 --GVID-------GHIYAVGGSHGCIHHNSVERYEPERDEWHLVAPMLTR-------RIGVGVAVLNRLLYAVGGFDGTN  161 (288)
T ss_dssp             --EEET-------TEEEEECCEETTEECCCEEEEETTTTEEEECCCCSSC-------CBSCEEEEETTEEEEECCBCSSC
T ss_pred             --cccc-------eeeEEecceecccccceeeeeccccCccccccccccc-------cccceeeeeeecceEecCccccc
Confidence              2233       478877653      2389999999999987765543       2345567789999998752    


Q ss_pred             -CCeEEEEECCCCeEEEeecCCCCCCCCceEEEECCeEEEEEEEeeCCccEEEEEEEecCCCCeEEEEeeChhhhhcccC
Q 012227          323 -PEGIVSYNMVTGVWKQFIIPTPLHLNDHTLAECGGRIMLVGLLTKNAATCVCIWELQKMTLLWKEVDRMPNIWCLDFYG  401 (468)
Q Consensus       323 -~~~i~~fD~~~~~w~~i~~P~p~~~~~~~l~~~~G~L~lv~~~~~~~~~~i~Vw~ld~~~~~W~~v~~mp~~~~~~~~~  401 (468)
                       ...+..||+.+++|..... .+........+..+++|+++++... .......|.++..+++|+.+..+|.....    
T Consensus       162 ~~~~~~~~d~~~~~~~~~~~-~~~~~~~~~~~~~~~~i~i~GG~~~-~~~~~~~~~~~~~~~~~~~~~~~p~~r~~----  235 (288)
T d1zgka1         162 RLNSAECYYPERNEWRMITA-MNTIRSGAGVCVLHNCIYAAGGYDG-QDQLNSVERYDVETETWTFVAPMKHRRSA----  235 (288)
T ss_dssp             BCCCEEEEETTTTEEEECCC-CSSCCBSCEEEEETTEEEEECCBCS-SSBCCCEEEEETTTTEEEECCCCSSCCBS----
T ss_pred             ccceEEEeeccccccccccc-cccccccccccceeeeEEEecCccc-cccccceeeeeecceeeecccCccCcccc----
Confidence             2468999999999998633 3334455677889999999887543 22334678889888999998877654321    


Q ss_pred             cceEEEEEecCCEEEEEeee---CCCCeEEEEECCCCcEEEccCCccCCC
Q 012227          402 KHVRMTCLGNKGLLMLSLRS---RQMNRLVTYNVMSREWLKVPGCVVPRG  448 (468)
Q Consensus       402 ~~~~~~~~~~~~~I~~~~~~---~~~~~l~~YD~~t~~w~~v~~~~~~~~  448 (468)
                          ..++..+|.||+..+.   .....+++||+++++|+.+..+|.+|.
T Consensus       236 ----~~~~~~~~~l~v~GG~~~~~~~~~v~~yd~~~~~W~~~~~~p~~R~  281 (288)
T d1zgka1         236 ----LGITVHQGRIYVLGGYDGHTFLDSVECYDPDTDTWSEVTRMTSGRS  281 (288)
T ss_dssp             ----CEEEEETTEEEEECCBCSSCBCCEEEEEETTTTEEEEEEECSSCCB
T ss_pred             ----eEEEEECCEEEEEecCCCCeecceEEEEECCCCEEEECCCCCCCcE
Confidence                2233347888875332   123568999999999999998887763

>d1zgka1 b.68.11.1 (A:322-609) Kelch-like ECH-associated protein 1, KEAP1 {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: Kelch motif
family: Kelch motif
domain: Kelch-like ECH-associated protein 1, KEAP1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.47  E-value=3e-12  Score=119.17  Aligned_cols=198  Identities=15%  Similarity=0.157  Sum_probs=141.2

Q ss_pred             ceEEEEcCCCCceEecCCCCcCCcceeEEEEEEcCCCCCCCeEEEEEEec----------CcEEEEeCCCCCccCCCCCC
Q 012227          225 RNFYVCNPLTQSFKELPARSVKVWSRVAVGMTLNGNSTSSGYKILWVGCD----------GEYEIYDSLRNSWTRPGSMP  294 (468)
Q Consensus       225 ~~~~V~NP~T~~~~~LP~~~~~~~~~~~~~~~~d~~~~~~~ykVv~v~~~----------~~v~vy~s~t~~W~~~~~~p  294 (468)
                      ..+.+|||.|++|..+++++.++....++.  .+       -+|+++|+.          ..+++||+.+++|+.++.+|
T Consensus        19 ~~~~~yd~~t~~W~~~~~~p~~R~~~~~~~--~~-------~~iyv~GG~~~~~~~~~~~~~~~~yd~~~~~w~~~~~~p   89 (288)
T d1zgka1          19 SYLEAYNPSNGTWLRLADLQVPRSGLAGCV--VG-------GLLYAVGGRNNSPDGNTDSSALDCYNPMTNQWSPCAPMS   89 (288)
T ss_dssp             CCEEEEETTTTEEEECCCCSSCCBSCEEEE--ET-------TEEEEECCEEEETTEEEECCCEEEEETTTTEEEECCCCS
T ss_pred             ceEEEEECCCCeEEECCCCCCccceeEEEE--EC-------CEEEEEeCcccCCCCccccchhhhccccccccccccccc
Confidence            368899999999999998877665443222  23       378888762          23899999999999998877


Q ss_pred             CCcccCcccccccceEEECCEEEEEEcC-----CCeEEEEECCCCeEEEeecCCCCCCCCceEEEECCeEEEEEEEeeCC
Q 012227          295 SNIKLPVSLNFRSQAVSVDGILYFMRSD-----PEGIVSYNMVTGVWKQFIIPTPLHLNDHTLAECGGRIMLVGLLTKNA  369 (468)
Q Consensus       295 ~~~~~~~~~~~~~~~v~~~G~lY~~~~~-----~~~i~~fD~~~~~w~~i~~P~p~~~~~~~l~~~~G~L~lv~~~~~~~  369 (468)
                      ..       +..+.++.++|++|++++.     ......||+.++.|... .+.+..+....++..+++++++++.... 
T Consensus        90 ~~-------r~~~~~~~~~~~i~~~gg~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~r~~~~~~~~~~~~~~~GG~~~~-  160 (288)
T d1zgka1          90 VP-------RNRIGVGVIDGHIYAVGGSHGCIHHNSVERYEPERDEWHLV-APMLTRRIGVGVAVLNRLLYAVGGFDGT-  160 (288)
T ss_dssp             SC-------CBTCEEEEETTEEEEECCEETTEECCCEEEEETTTTEEEEC-CCCSSCCBSCEEEEETTEEEEECCBCSS-
T ss_pred             ce-------ecceeccccceeeEEecceecccccceeeeeccccCccccc-cccccccccceeeeeeecceEecCcccc-
Confidence            54       2356677889999998751     24578899999999886 3445555667788899999998875432 


Q ss_pred             ccEEEEEEEecCCCCeEEEEeeChhhhhcccCcceEEEEEecCCEEEEEeeeC---CCCeEEEEECCCCcEEEccCCccC
Q 012227          370 ATCVCIWELQKMTLLWKEVDRMPNIWCLDFYGKHVRMTCLGNKGLLMLSLRSR---QMNRLVTYNVMSREWLKVPGCVVP  446 (468)
Q Consensus       370 ~~~i~Vw~ld~~~~~W~~v~~mp~~~~~~~~~~~~~~~~~~~~~~I~~~~~~~---~~~~l~~YD~~t~~w~~v~~~~~~  446 (468)
                      .....++.++..+++|.....++.....        ...+..++.|++.....   .......||..+++|+.++..|.+
T Consensus       161 ~~~~~~~~~d~~~~~~~~~~~~~~~~~~--------~~~~~~~~~i~i~GG~~~~~~~~~~~~~~~~~~~~~~~~~~p~~  232 (288)
T d1zgka1         161 NRLNSAECYYPERNEWRMITAMNTIRSG--------AGVCVLHNCIYAAGGYDGQDQLNSVERYDVETETWTFVAPMKHR  232 (288)
T ss_dssp             CBCCCEEEEETTTTEEEECCCCSSCCBS--------CEEEEETTEEEEECCBCSSSBCCCEEEEETTTTEEEECCCCSSC
T ss_pred             cccceEEEeecccccccccccccccccc--------ccccceeeeEEEecCccccccccceeeeeecceeeecccCccCc
Confidence            2233677889888999987665543221        12233467777643222   234689999999999999887777


Q ss_pred             CC
Q 012227          447 RG  448 (468)
Q Consensus       447 ~~  448 (468)
                      +.
T Consensus       233 r~  234 (288)
T d1zgka1         233 RS  234 (288)
T ss_dssp             CB
T ss_pred             cc
Confidence            64

>d1k3ia3 b.69.1.1 (A:151-537) Galactose oxidase, central domain {Fungi (Fusarium sp.) [TaxId: 29916]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: Galactose oxidase, central domain
family: Galactose oxidase, central domain
domain: Galactose oxidase, central domain
species: Fungi (Fusarium sp.) [TaxId: 29916]

Probab=99.19  E-value=2.4e-11  Score=117.79  Aligned_cols=249  Identities=13%  Similarity=0.083  Sum_probs=146.1

Q ss_pred             ceecCCCCcccCCCCCCCCCCcE--EEEeeecCceEEEEEc-CCceEEEEcCCCCceEecCCCCcCCcceeEEEEEEcCC
Q 012227          184 AMYDPSLKKWHHPTISSLPTKMI--ILPVASAGGLVCFLDI-GHRNFYVCNPLTQSFKELPARSVKVWSRVAVGMTLNGN  260 (468)
Q Consensus       184 ~~~dp~~~~w~~~~l~~~p~~~~--~~~~~s~~GLl~~~~~-~~~~~~V~NP~T~~~~~LP~~~~~~~~~~~~~~~~d~~  260 (468)
                      ..|||.+++|...+....+...+  .. ....+|.+++.+. ....+.+|||.|++|..+|.++..++.+. +....|  
T Consensus        55 ~~yd~~t~~w~~~~~~~~~~~~~~~~~-~~~~~g~i~v~Gg~~~~~~~~yd~~~~~w~~~~~~~~~r~~~~-~~~~~d--  130 (387)
T d1k3ia3          55 SSWDPSTGIVSDRTVTVTKHDMFCPGI-SMDGNGQIVVTGGNDAKKTSLYDSSSDSWIPGPDMQVARGYQS-SATMSD--  130 (387)
T ss_dssp             EEECTTTCCBCCCEEEECSCCCSSCEE-EECTTSCEEEECSSSTTCEEEEEGGGTEEEECCCCSSCCSSCE-EEECTT--
T ss_pred             EEEECCCCcEeecCCCCCCcccceeEE-EEecCCcEEEeecCCCcceeEecCccCcccccccccccccccc-eeeecC--
Confidence            47999999997654333333211  11 3335777766654 34579999999999999999877665443 222222  


Q ss_pred             CCCCCeEEEEEEec-------CcEEEEeCCCCCccCCCCCCCCcccCcc----cccccce-EE--ECCEEEEEEcCCCeE
Q 012227          261 STSSGYKILWVGCD-------GEYEIYDSLRNSWTRPGSMPSNIKLPVS----LNFRSQA-VS--VDGILYFMRSDPEGI  326 (468)
Q Consensus       261 ~~~~~ykVv~v~~~-------~~v~vy~s~t~~W~~~~~~p~~~~~~~~----~~~~~~~-v~--~~G~lY~~~~~~~~i  326 (468)
                           .+|+++++.       ..+++||+.+++|+.++.+.........    ....... ++  .+|.+|..+.....+
T Consensus       131 -----G~v~v~GG~~~~~~~~~~v~~yd~~~~~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~~~~g~~~~~~  205 (387)
T d1k3ia3         131 -----GRVFTIGGSWSGGVFEKNGEVYSPSSKTWTSLPNAKVNPMLTADKQGLYRSDNHAWLFGWKKGSVFQAGPSTAMN  205 (387)
T ss_dssp             -----SCEEEECCCCCSSSCCCCEEEEETTTTEEEEETTSCSGGGCCCCTTGGGTTTCSCCEEECGGGCEEECCSSSEEE
T ss_pred             -----CceeeeccccccccccceeeeecCCCCceeecCCCcccccccccccceeeccceeEEEEeCCCCEEEecCcCCcE
Confidence                 478888763       2499999999999987654432111100    0001111 11  267888776655678


Q ss_pred             EEEECCCCeEEEeecC-CC-----CCCCCce--EEEECCeEEEEEEEeeCC----ccEEEEEEEecC---CCCeEEEEee
Q 012227          327 VSYNMVTGVWKQFIIP-TP-----LHLNDHT--LAECGGRIMLVGLLTKNA----ATCVCIWELQKM---TLLWKEVDRM  391 (468)
Q Consensus       327 ~~fD~~~~~w~~i~~P-~p-----~~~~~~~--l~~~~G~L~lv~~~~~~~----~~~i~Vw~ld~~---~~~W~~v~~m  391 (468)
                      ..||+.+..|...... .+     .......  +...+|+++++++.....    .....+..+...   ...|..+..|
T Consensus       206 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~v~v~GG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  285 (387)
T d1k3ia3         206 WYYTSGSGDVKSAGKRQSNRGVAPDAMCGNAVMYDAVKGKILTFGGSPDYQDSDATTNAHIITLGEPGTSPNTVFASNGL  285 (387)
T ss_dssp             EEECSTTCEEEEEEECEETTEECCCCBTCEEEEEETTTTEEEEECCBSSSSSSBCCCCEEEEECCSTTSCCEEEECTTCC
T ss_pred             EecCcccCcEeeccccccCcccCcccccccEEEeeccCCceEEEEeccCCCCCcccceeecccccccccCCCceeecccc
Confidence            8899999999875211 11     1111112  223489999998754311    122233333322   3456666666


Q ss_pred             ChhhhhcccCcceEEEEEecCCEEEEEeeeC---------CCCeEEEEECCCCcEEEccCCccCCC
Q 012227          392 PNIWCLDFYGKHVRMTCLGNKGLLMLSLRSR---------QMNRLVTYNVMSREWLKVPGCVVPRG  448 (468)
Q Consensus       392 p~~~~~~~~~~~~~~~~~~~~~~I~~~~~~~---------~~~~l~~YD~~t~~w~~v~~~~~~~~  448 (468)
                      |.....       .-.++..+|.||+..+..         ....+..||+++++|+.++.++.+|.
T Consensus       286 p~~r~~-------~~~~~~~dg~i~v~GG~~~~~~~~~~~~~~~ve~Ydp~~~~W~~~~~~~~~R~  344 (387)
T d1k3ia3         286 YFARTF-------HTSVVLPDGSTFITGGQRRGIPFEDSTPVFTPEIYVPEQDTFYKQNPNSIVRV  344 (387)
T ss_dssp             SSCCBS-------CEEEECTTSCEEEECCBSBCCTTCCCSBCCCCEEEEGGGTEEEECCCCSSCCC
T ss_pred             cccccc-------ceeeeccCCeEEEECCcccCccCCCCcEeceEEEEECCCCeEEECCCCCCccc
Confidence            644321       012333356777643321         11257899999999999999988874

>d1fs1a1 a.158.1.1 (A:109-149) Skp2 {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: F-box domain
superfamily: F-box domain
family: F-box domain
domain: Skp2
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.13  E-value=1.1e-11  Score=78.79  Aligned_cols=40  Identities=23%  Similarity=0.710  Sum_probs=37.3

Q ss_pred             hccChHHHHHHHHhcCChhhHHHHhhcccchhhhccCcch
Q 012227          119 WKEFPEDLYEAVIARLPIATFFRFRSVCQKWNSLLKSHSF  158 (468)
Q Consensus       119 w~~LP~DLl~~IL~RLp~~~l~r~r~VCK~Wr~li~s~~F  158 (468)
                      |..||+|++.+||+.||.+++.|++.|||+|+.++.++.+
T Consensus         1 f~~LP~eil~~If~~L~~~dl~~~~~Vcr~w~~l~~~~~l   40 (41)
T d1fs1a1           1 WDSLPDELLLGIFSCLCLPELLKVSGVCKRWYRLASDESL   40 (41)
T ss_dssp             CCSSCHHHHHHHHTTSCGGGHHHHHTTCHHHHHHHTCGGG
T ss_pred             CCcCCHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCCccc
Confidence            5789999999999999999999999999999999988754

>d1k3ia3 b.69.1.1 (A:151-537) Galactose oxidase, central domain {Fungi (Fusarium sp.) [TaxId: 29916]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: Galactose oxidase, central domain
family: Galactose oxidase, central domain
domain: Galactose oxidase, central domain
species: Fungi (Fusarium sp.) [TaxId: 29916]

Probab=98.91  E-value=2.8e-09  Score=102.89  Aligned_cols=199  Identities=9%  Similarity=-0.021  Sum_probs=124.6

Q ss_pred             cCCCCceEecCCCCcCCcceeEEEEEEcCCCCCCCeEEEEEEecC------------cEEEEeCCCCCccCCCCCCCCcc
Q 012227          231 NPLTQSFKELPARSVKVWSRVAVGMTLNGNSTSSGYKILWVGCDG------------EYEIYDSLRNSWTRPGSMPSNIK  298 (468)
Q Consensus       231 NP~T~~~~~LP~~~~~~~~~~~~~~~~d~~~~~~~ykVv~v~~~~------------~v~vy~s~t~~W~~~~~~p~~~~  298 (468)
                      .|.+++|..+++.+....  . .++..      .+.||+++++..            .+++||+.+++|+....++....
T Consensus         5 ~p~~g~W~~~~~~p~~~~--~-~a~~~------~~gkv~v~GG~~~~~~~~~~~~~~~~~~yd~~t~~w~~~~~~~~~~~   75 (387)
T d1k3ia3           5 QPGLGRWGPTIDLPIVPA--A-AAIEP------TSGRVLMWSSYRNDAFGGSPGGITLTSSWDPSTGIVSDRTVTVTKHD   75 (387)
T ss_dssp             CTTSCEEEEEEECSSCCS--E-EEEET------TTTEEEEEEECCCTTTCSCCCSEEEEEEECTTTCCBCCCEEEECSCC
T ss_pred             CCCCCccCCcCCCCcccc--E-EEEEe------eCCEEEEEEeecCcccCCCCCceeEEEEEECCCCcEeecCCCCCCcc
Confidence            478899998776554322  1 22221      235999998731            17899999999987755432211


Q ss_pred             cCccccccc-ceEEECCEEEEEEc-CCCeEEEEECCCCeEEEeecCCCCCCCCceEEEE-CCeEEEEEEEeeCCccEEEE
Q 012227          299 LPVSLNFRS-QAVSVDGILYFMRS-DPEGIVSYNMVTGVWKQFIIPTPLHLNDHTLAEC-GGRIMLVGLLTKNAATCVCI  375 (468)
Q Consensus       299 ~~~~~~~~~-~~v~~~G~lY~~~~-~~~~i~~fD~~~~~w~~i~~P~p~~~~~~~l~~~-~G~L~lv~~~~~~~~~~i~V  375 (468)
                           .+.. ..+..+|++|+.+. +...+..||+.+++|..+ .+++..+..+..+.. +|+++++++........-.+
T Consensus        76 -----~~~~~~~~~~~g~i~v~Gg~~~~~~~~yd~~~~~w~~~-~~~~~~r~~~~~~~~~dG~v~v~GG~~~~~~~~~~v  149 (387)
T d1k3ia3          76 -----MFCPGISMDGNGQIVVTGGNDAKKTSLYDSSSDSWIPG-PDMQVARGYQSSATMSDGRVFTIGGSWSGGVFEKNG  149 (387)
T ss_dssp             -----CSSCEEEECTTSCEEEECSSSTTCEEEEEGGGTEEEEC-CCCSSCCSSCEEEECTTSCEEEECCCCCSSSCCCCE
T ss_pred             -----cceeEEEEecCCcEEEeecCCCcceeEecCccCccccc-ccccccccccceeeecCCceeeecccccccccccee
Confidence                 1112 23335899999886 335789999999999986 445555555666655 89999998754432223356


Q ss_pred             EEEecCCCCeEEEEeeChhhhhccc------CcceEEEEEecCCEEEEEeeeCCCCeEEEEECCCCcEEEccCCccC
Q 012227          376 WELQKMTLLWKEVDRMPNIWCLDFY------GKHVRMTCLGNKGLLMLSLRSRQMNRLVTYNVMSREWLKVPGCVVP  446 (468)
Q Consensus       376 w~ld~~~~~W~~v~~mp~~~~~~~~------~~~~~~~~~~~~~~I~~~~~~~~~~~l~~YD~~t~~w~~v~~~~~~  446 (468)
                      +.++..+++|+.+..++........      .......+...+|.+++.  ......+..||..+..|......+..
T Consensus       150 ~~yd~~~~~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~~~~--g~~~~~~~~~~~~~~~~~~~~~~~~~  224 (387)
T d1k3ia3         150 EVYSPSSKTWTSLPNAKVNPMLTADKQGLYRSDNHAWLFGWKKGSVFQA--GPSTAMNWYYTSGSGDVKSAGKRQSN  224 (387)
T ss_dssp             EEEETTTTEEEEETTSCSGGGCCCCTTGGGTTTCSCCEEECGGGCEEEC--CSSSEEEEEECSTTCEEEEEEECEET
T ss_pred             eeecCCCCceeecCCCcccccccccccceeeccceeEEEEeCCCCEEEe--cCcCCcEEecCcccCcEeeccccccC
Confidence            6779989999998766433221110      001122233345666542  22345788999999999988655443

>d2ovrb1 a.158.1.1 (B:2263-2364) F-box/WD repeat-containing protein 7, FBXW7 {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: F-box domain
superfamily: F-box domain
family: F-box domain
domain: F-box/WD repeat-containing protein 7, FBXW7
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.30  E-value=1.4e-07  Score=72.83  Aligned_cols=43  Identities=16%  Similarity=0.319  Sum_probs=40.2

Q ss_pred             hccChHHHHHHHHhcCChhhHHHHhhcccchhhhccCcchhhh
Q 012227          119 WKEFPEDLYEAVIARLPIATFFRFRSVCQKWNSLLKSHSFSQH  161 (468)
Q Consensus       119 w~~LP~DLl~~IL~RLp~~~l~r~r~VCK~Wr~li~s~~F~~~  161 (468)
                      ++.||+||+..||+.|++.|+.++++|||+|+.++.++.+-+.
T Consensus        19 i~~LP~Eil~~Ils~Ld~~dL~~~~~vcr~w~~l~~~~~lW~~   61 (102)
T d2ovrb1          19 ISLLPKELALYVLSFLEPKDLLQAAQTCRYWRILAEDNLLWRE   61 (102)
T ss_dssp             TTSSCHHHHHHHHTTSCHHHHHHHTTSCHHHHHHHTCSHHHHH
T ss_pred             hhhCCHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHCCHHHHHH
Confidence            5789999999999999999999999999999999999988764

>d1nexb1 a.158.1.1 (B:270-369) Cdc4 F-box and linker domains {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All alpha proteins
fold: F-box domain
superfamily: F-box domain
family: F-box domain
domain: Cdc4 F-box and linker domains
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=98.30  E-value=9.5e-08  Score=73.42  Aligned_cols=43  Identities=16%  Similarity=0.369  Sum_probs=37.9

Q ss_pred             hhccChHHHHHHHHhcCChhhHHHHhhcccchhhhccC-cchhh
Q 012227          118 IWKEFPEDLYEAVIARLPIATFFRFRSVCQKWNSLLKS-HSFSQ  160 (468)
Q Consensus       118 ~w~~LP~DLl~~IL~RLp~~~l~r~r~VCK~Wr~li~s-~~F~~  160 (468)
                      .++.||+||+..||+.|+..++.+++.|||+|+.++++ +.+-+
T Consensus         5 ~~~~LP~Ell~~I~s~Ld~~dL~~~s~Vcr~W~~~~~~d~~LWr   48 (100)
T d1nexb1           5 LITSLPFEISLKIFNYLQFEDIINSLGVSQNWNKIIRKSTSLWK   48 (100)
T ss_dssp             HHHHSCHHHHHHHHTTSCHHHHHHHTTTCHHHHHHHHTCSHHHH
T ss_pred             chhhCCHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHCCHHHHH
Confidence            46789999999999999999999999999999999854 55544

>d1p22a1 a.158.1.1 (A:135-252) F-box/WD-repeat protein 1 (beta-TRCP1) {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: F-box domain
superfamily: F-box domain
family: F-box domain
domain: F-box/WD-repeat protein 1 (beta-TRCP1)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.90  E-value=1.7e-06  Score=68.40  Aligned_cols=44  Identities=14%  Similarity=0.384  Sum_probs=39.2

Q ss_pred             hhccCh----HHHHHHHHhcCChhhHHHHhhcccchhhhccCcchhhh
Q 012227          118 IWKEFP----EDLYEAVIARLPIATFFRFRSVCQKWNSLLKSHSFSQH  161 (468)
Q Consensus       118 ~w~~LP----~DLl~~IL~RLp~~~l~r~r~VCK~Wr~li~s~~F~~~  161 (468)
                      .++.||    +||+..||+.|+..+|.++++|||+|+.++.++.+-+.
T Consensus        10 ~i~~LP~~l~~EI~~~Ils~Ld~~dL~~~s~Vck~W~~l~~d~~lWk~   57 (118)
T d1p22a1          10 FITALPARGLDHIAENILSYLDAKSLCAAELVCKEWYRVTSDGMLWKK   57 (118)
T ss_dssp             HHHHTGGGTCHHHHHHHHTTCCHHHHHHHHHHCHHHHHHHHHTTHHHH
T ss_pred             HHHHCCCCChHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHcCHHHHHH
Confidence            356677    69999999999999999999999999999999888664

>d1q7fa_ b.68.9.1 (A:) Brain tumor cg10719-pa {Fruit fly (Drosophila melanogaster) [TaxId: 7227]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: NHL repeat
family: NHL repeat
domain: Brain tumor cg10719-pa
species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]

Probab=95.73  E-value=0.34  Score=42.35  Aligned_cols=201  Identities=8%  Similarity=0.050  Sum_probs=97.0

Q ss_pred             cCceEEEEEcCCceEEEEcCCCCceEecCCCCcC-CcceeEEEEEEcCCCCCCCeEEEEEEecCcEEEEeCCCCCccCCC
Q 012227          213 AGGLVCFLDIGHRNFYVCNPLTQSFKELPARSVK-VWSRVAVGMTLNGNSTSSGYKILWVGCDGEYEIYDSLRNSWTRPG  291 (468)
Q Consensus       213 ~~GLl~~~~~~~~~~~V~NP~T~~~~~LP~~~~~-~~~~~~~~~~~d~~~~~~~ykVv~v~~~~~v~vy~s~t~~W~~~~  291 (468)
                      .+|-|++.+...+++.++|+-..--..++..... .......++..+  ...+.+-++.......+.+++.....+....
T Consensus        32 ~dg~i~VaD~~n~rI~v~d~~G~~~~~~~~~~~~~~~~~~p~~~~~~--~~~~~~~~~~~~~~~~i~~~~~~g~~~~~~~  109 (279)
T d1q7fa_          32 AQNDIIVADTNNHRIQIFDKEGRFKFQFGECGKRDSQLLYPNRVAVV--RNSGDIIVTERSPTHQIQIYNQYGQFVRKFG  109 (279)
T ss_dssp             TTCCEEEEEGGGTEEEEECTTSCEEEEECCBSSSTTCBSSEEEEEEE--TTTTEEEEEECGGGCEEEEECTTSCEEEEEC
T ss_pred             CCCCEEEEECCCCEEEEEeCCCCEEEEecccCCCccccccccccccc--ccccccceeccCCccccccccccccceeecC
Confidence            4788888887778899999864333344332111 001111222222  1222222211122234677776554444332


Q ss_pred             CCCCCcccCcccccccceEEE--CCEEEEEEcCCCeEEEEECCCCeEEEeecCCCCCCCCce-EEE-ECCeEEEEEEEee
Q 012227          292 SMPSNIKLPVSLNFRSQAVSV--DGILYFMRSDPEGIVSYNMVTGVWKQFIIPTPLHLNDHT-LAE-CGGRIMLVGLLTK  367 (468)
Q Consensus       292 ~~p~~~~~~~~~~~~~~~v~~--~G~lY~~~~~~~~i~~fD~~~~~w~~i~~P~p~~~~~~~-l~~-~~G~L~lv~~~~~  367 (468)
                      .-  ...       ...++.+  +|.+|+.......+..||........+....  ...... ++. -+|.||++.... 
T Consensus       110 ~~--~~~-------~p~~~avd~~G~i~v~~~~~~~~~~~~~~g~~~~~~g~~~--~~~~~~~i~~d~~g~i~v~d~~~-  177 (279)
T d1q7fa_         110 AT--ILQ-------HPRGVTVDNKGRIIVVECKVMRVIIFDQNGNVLHKFGCSK--HLEFPNGVVVNDKQEIFISDNRA-  177 (279)
T ss_dssp             TT--TCS-------CEEEEEECTTSCEEEEETTTTEEEEECTTSCEEEEEECTT--TCSSEEEEEECSSSEEEEEEGGG-
T ss_pred             CC--ccc-------ccceeccccCCcEEEEeeccceeeEeccCCceeecccccc--cccccceeeeccceeEEeeeccc-
Confidence            10  000       1123333  6888888776678999998877655543222  122222 222 368888765322 


Q ss_pred             CCccEEEEEEEecCCCCeEEEEeeChhhhhcccCcceEEEEEecCCEEEEEeeeCCCCeEEEEECCCCcEEEc
Q 012227          368 NAATCVCIWELQKMTLLWKEVDRMPNIWCLDFYGKHVRMTCLGNKGLLMLSLRSRQMNRLVTYNVMSREWLKV  440 (468)
Q Consensus       368 ~~~~~i~Vw~ld~~~~~W~~v~~mp~~~~~~~~~~~~~~~~~~~~~~I~~~~~~~~~~~l~~YD~~t~~w~~v  440 (468)
                         .  .|++++........+   ...-  .+.  ...-.++..+|.||+... ....++.+||.+-+-...+
T Consensus       178 ---~--~V~~~d~~G~~~~~~---g~~g--~~~--~P~giavD~~G~i~Vad~-~~~~~v~~f~~~G~~~~~~  237 (279)
T d1q7fa_         178 ---H--CVKVFNYEGQYLRQI---GGEG--ITN--YPIGVGINSNGEILIADN-HNNFNLTIFTQDGQLISAL  237 (279)
T ss_dssp             ---T--EEEEEETTCCEEEEE---SCTT--TSC--SEEEEEECTTCCEEEEEC-SSSCEEEEECTTSCEEEEE
T ss_pred             ---c--ceeeeecCCceeeee---cccc--ccc--CCcccccccCCeEEEEEC-CCCcEEEEECCCCCEEEEE
Confidence               2  556667653322222   1110  000  011234555566776432 2234688999765533333

>d2ghsa1 b.68.6.1 (A:20-314) Regucalcin {Agrobacterium tumefaciens [TaxId: 358]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: Calcium-dependent phosphotriesterase
family: SGL-like
domain: Regucalcin
species: Agrobacterium tumefaciens [TaxId: 358]

Probab=94.02  E-value=0.66  Score=40.96  Aligned_cols=199  Identities=11%  Similarity=0.054  Sum_probs=99.6

Q ss_pred             eecCceEEEEEcCCceEEEEcCCCCceEecCCCCcCCcceeEEEEEEcCCCCCCCeEEEEEEecCcEEEEeCCCCCccCC
Q 012227          211 ASAGGLVCFLDIGHRNFYVCNPLTQSFKELPARSVKVWSRVAVGMTLNGNSTSSGYKILWVGCDGEYEIYDSLRNSWTRP  290 (468)
Q Consensus       211 ~s~~GLl~~~~~~~~~~~V~NP~T~~~~~LP~~~~~~~~~~~~~~~~d~~~~~~~ykVv~v~~~~~v~vy~s~t~~W~~~  290 (468)
                      ...+|-|++.+....+++.+||.+++....+.+.    ....+++.-+       ..+++ +...++..||+.+++++.+
T Consensus        26 d~~~~~l~wvDi~~~~I~r~d~~~g~~~~~~~~~----~~~~i~~~~d-------g~l~v-a~~~gl~~~d~~tg~~~~l   93 (295)
T d2ghsa1          26 DPASGTAWWFNILERELHELHLASGRKTVHALPF----MGSALAKISD-------SKQLI-ASDDGLFLRDTATGVLTLH   93 (295)
T ss_dssp             ETTTTEEEEEEGGGTEEEEEETTTTEEEEEECSS----CEEEEEEEET-------TEEEE-EETTEEEEEETTTCCEEEE
T ss_pred             ECCCCEEEEEECCCCEEEEEECCCCeEEEEECCC----CcEEEEEecC-------CCEEE-EEeCccEEeecccceeeEE
Confidence            3456777777766678999999999877654321    1223333323       23443 3456799999999988766


Q ss_pred             CCCCCCcccCcccccccceEEECCEEEEEEcC----CCeEEEEECCCCeEEEeecCCCCCCCCceEEEE-CC-eEEEEEE
Q 012227          291 GSMPSNIKLPVSLNFRSQAVSVDGILYFMRSD----PEGIVSYNMVTGVWKQFIIPTPLHLNDHTLAEC-GG-RIMLVGL  364 (468)
Q Consensus       291 ~~~p~~~~~~~~~~~~~~~v~~~G~lY~~~~~----~~~i~~fD~~~~~w~~i~~P~p~~~~~~~l~~~-~G-~L~lv~~  364 (468)
                      ........  . .+.....+--+|.+|+-...    ...-..|....++...+.....  .. ..++.. ++ .||++..
T Consensus        94 ~~~~~~~~--~-~~~nd~~vd~~G~iw~~~~~~~~~~~~g~l~~~~~g~~~~~~~~~~--~~-Ng~~~s~d~~~l~~~dt  167 (295)
T d2ghsa1          94 AELESDLP--G-NRSNDGRMHPSGALWIGTMGRKAETGAGSIYHVAKGKVTKLFADIS--IP-NSICFSPDGTTGYFVDT  167 (295)
T ss_dssp             ECSSTTCT--T-EEEEEEEECTTSCEEEEEEETTCCTTCEEEEEEETTEEEEEEEEES--SE-EEEEECTTSCEEEEEET
T ss_pred             eeeecCCC--c-ccceeeEECCCCCEEEEeccccccccceeEeeecCCcEEEEeeccC--Cc-ceeeecCCCceEEEeec
Confidence            44322211  0 01111122237887765421    1122334445566555422111  11 122222 34 4555432


Q ss_pred             EeeCCccEEEEEEEe--cCCC----CeEEEEeeChhhhhcccCcceEEEEEecCCEEEEEeeeCCCCeEEEEECCCCcEE
Q 012227          365 LTKNAATCVCIWELQ--KMTL----LWKEVDRMPNIWCLDFYGKHVRMTCLGNKGLLMLSLRSRQMNRLVTYNVMSREWL  438 (468)
Q Consensus       365 ~~~~~~~~i~Vw~ld--~~~~----~W~~v~~mp~~~~~~~~~~~~~~~~~~~~~~I~~~~~~~~~~~l~~YD~~t~~w~  438 (468)
                          ...  .||+++  ....    +.......+...     + ...-.++..+|.|++...  ..+.|.+||++.+...
T Consensus       168 ----~~~--~I~~~~~d~~~~~~~~~~~~~~~~~~~~-----g-~pdG~~vD~~GnlWva~~--~~g~V~~~dp~G~~~~  233 (295)
T d2ghsa1         168 ----KVN--RLMRVPLDARTGLPTGKAEVFIDSTGIK-----G-GMDGSVCDAEGHIWNARW--GEGAVDRYDTDGNHIA  233 (295)
T ss_dssp             ----TTC--EEEEEEBCTTTCCBSSCCEEEEECTTSS-----S-EEEEEEECTTSCEEEEEE--TTTEEEEECTTCCEEE
T ss_pred             ----ccc--eeeEeeecccccccccceEEEeccCccc-----c-cccceEEcCCCCEEeeee--CCCceEEecCCCcEee
Confidence                123  455554  3221    122222221110     0 011234556777877543  2468999999998888


Q ss_pred             Ecc
Q 012227          439 KVP  441 (468)
Q Consensus       439 ~v~  441 (468)
                      +++
T Consensus       234 ~i~  236 (295)
T d2ghsa1         234 RYE  236 (295)
T ss_dssp             EEE
T ss_pred             Eec
Confidence            874

>d2ghsa1 b.68.6.1 (A:20-314) Regucalcin {Agrobacterium tumefaciens [TaxId: 358]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: Calcium-dependent phosphotriesterase
family: SGL-like
domain: Regucalcin
species: Agrobacterium tumefaciens [TaxId: 358]

Probab=92.46  E-value=3.1  Score=36.26  Aligned_cols=200  Identities=8%  Similarity=-0.016  Sum_probs=93.2

Q ss_pred             ceecCCCCcccCCCCCCCCCCcEEEEeeecCceEEEEEcCCceEEEEcCCCCceEecCCCCcCCcceeEEEEEEcCCCCC
Q 012227          184 AMYDPSLKKWHHPTISSLPTKMIILPVASAGGLVCFLDIGHRNFYVCNPLTQSFKELPARSVKVWSRVAVGMTLNGNSTS  263 (468)
Q Consensus       184 ~~~dp~~~~w~~~~l~~~p~~~~~~~~~s~~GLl~~~~~~~~~~~V~NP~T~~~~~LP~~~~~~~~~~~~~~~~d~~~~~  263 (468)
                      ..+|+..+......+|..+.   .+.....+++++. ..  ..++++||.|++...+............-....|+.   
T Consensus        43 ~r~d~~~g~~~~~~~~~~~~---~i~~~~dg~l~va-~~--~gl~~~d~~tg~~~~l~~~~~~~~~~~~nd~~vd~~---  113 (295)
T d2ghsa1          43 HELHLASGRKTVHALPFMGS---ALAKISDSKQLIA-SD--DGLFLRDTATGVLTLHAELESDLPGNRSNDGRMHPS---  113 (295)
T ss_dssp             EEEETTTTEEEEEECSSCEE---EEEEEETTEEEEE-ET--TEEEEEETTTCCEEEEECSSTTCTTEEEEEEEECTT---
T ss_pred             EEEECCCCeEEEEECCCCcE---EEEEecCCCEEEE-Ee--CccEEeecccceeeEEeeeecCCCcccceeeEECCC---
Confidence            34566665433333443332   2324444555544 32  369999999999888755422111111122234421   


Q ss_pred             CCeEEEEEEec-----CcEEEEeCCCCCccCCCCCCCCcccCcccccccceEEE---CCEEEEEEcCCCeEEEEECCCC-
Q 012227          264 SGYKILWVGCD-----GEYEIYDSLRNSWTRPGSMPSNIKLPVSLNFRSQAVSV---DGILYFMRSDPEGIVSYNMVTG-  334 (468)
Q Consensus       264 ~~ykVv~v~~~-----~~v~vy~s~t~~W~~~~~~p~~~~~~~~~~~~~~~v~~---~G~lY~~~~~~~~i~~fD~~~~-  334 (468)
                        ..+++-...     ..-.+|...+++-+.+..   ..      . ...++.+   +..+||.......|..||+..+ 
T Consensus       114 --G~iw~~~~~~~~~~~~g~l~~~~~g~~~~~~~---~~------~-~~Ng~~~s~d~~~l~~~dt~~~~I~~~~~d~~~  181 (295)
T d2ghsa1         114 --GALWIGTMGRKAETGAGSIYHVAKGKVTKLFA---DI------S-IPNSICFSPDGTTGYFVDTKVNRLMRVPLDART  181 (295)
T ss_dssp             --SCEEEEEEETTCCTTCEEEEEEETTEEEEEEE---EE------S-SEEEEEECTTSCEEEEEETTTCEEEEEEBCTTT
T ss_pred             --CCEEEEeccccccccceeEeeecCCcEEEEee---cc------C-CcceeeecCCCceEEEeecccceeeEeeecccc
Confidence              223222111     113444444443332210   00      0 1223333   4468888877778999986432 


Q ss_pred             ------eEEEeecCCCCCCCCceEEEECCeEEEEEEEeeCCccEEEEEEEecCCCCeEEEEeeChhhhhcccCcceEEEE
Q 012227          335 ------VWKQFIIPTPLHLNDHTLAECGGRIMLVGLLTKNAATCVCIWELQKMTLLWKEVDRMPNIWCLDFYGKHVRMTC  408 (468)
Q Consensus       335 ------~w~~i~~P~p~~~~~~~l~~~~G~L~lv~~~~~~~~~~i~Vw~ld~~~~~W~~v~~mp~~~~~~~~~~~~~~~~  408 (468)
                            ....+..+.....-....+..+|.|++......      .|.++++... -...-.+|...        ..-.|
T Consensus       182 ~~~~~~~~~~~~~~~~~g~pdG~~vD~~GnlWva~~~~g------~V~~~dp~G~-~~~~i~lP~~~--------~T~~~  246 (295)
T d2ghsa1         182 GLPTGKAEVFIDSTGIKGGMDGSVCDAEGHIWNARWGEG------AVDRYDTDGN-HIARYEVPGKQ--------TTCPA  246 (295)
T ss_dssp             CCBSSCCEEEEECTTSSSEEEEEEECTTSCEEEEEETTT------EEEEECTTCC-EEEEEECSCSB--------EEEEE
T ss_pred             cccccceEEEeccCcccccccceEEcCCCCEEeeeeCCC------ceEEecCCCc-EeeEecCCCCc--------eEEEE
Confidence                  222222221111111112235889887653222      6777887644 33444566432        12334


Q ss_pred             Ee--cCCEEEEEe
Q 012227          409 LG--NKGLLMLSL  419 (468)
Q Consensus       409 ~~--~~~~I~~~~  419 (468)
                      ++  +.+.||+..
T Consensus       247 FGG~d~~~LyvTt  259 (295)
T d2ghsa1         247 FIGPDASRLLVTS  259 (295)
T ss_dssp             EESTTSCEEEEEE
T ss_pred             EeCCCCCEEEEEE
Confidence            54  346788754

>d1qksa2 b.70.2.1 (A:136-567) C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase {Paracoccus denitrificans [TaxId: 266]}

class: All beta proteins
fold: 8-bladed beta-propeller
superfamily: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase
family: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase
domain: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase
species: Paracoccus denitrificans [TaxId: 266]

Probab=90.53  E-value=6.4  Score=36.13  Aligned_cols=108  Identities=12%  Similarity=0.027  Sum_probs=61.9

Q ss_pred             CceEEEEEcCCceEEEEcCCCCceEe-cCCCCcCCcceeEEEEEEcCCCCCCCeEEEEEEecCcEEEEeCCCCCccCCCC
Q 012227          214 GGLVCFLDIGHRNFYVCNPLTQSFKE-LPARSVKVWSRVAVGMTLNGNSTSSGYKILWVGCDGEYEIYDSLRNSWTRPGS  292 (468)
Q Consensus       214 ~GLl~~~~~~~~~~~V~NP~T~~~~~-LP~~~~~~~~~~~~~~~~d~~~~~~~ykVv~v~~~~~v~vy~s~t~~W~~~~~  292 (468)
                      ..|+++.......+.|+|+.|++... ++..   . ....+.|..|     + -.+++.+.++.+.+||..+++-.....
T Consensus        31 ~~~~~v~~~d~g~v~v~D~~t~~v~~~~~~g---~-~~~~v~fSpD-----G-~~l~~~s~dg~v~~~d~~t~~~~~~~~  100 (432)
T d1qksa2          31 ENLFSVTLRDAGQIALIDGSTYEIKTVLDTG---Y-AVHISRLSAS-----G-RYLFVIGRDGKVNMIDLWMKEPTTVAE  100 (432)
T ss_dssp             GGEEEEEETTTTEEEEEETTTCCEEEEEECS---S-CEEEEEECTT-----S-CEEEEEETTSEEEEEETTSSSCCEEEE
T ss_pred             CcEEEEEEcCCCEEEEEECCCCcEEEEEeCC---C-CeeEEEECCC-----C-CEEEEEcCCCCEEEEEeeCCCceEEEE
Confidence            34556666667789999999998764 4431   1 1223333222     1 234444556679999988765433222


Q ss_pred             CCCCcccCcccccccceEEE------CCE-EEEEEcCCCeEEEEECCCCeEEEe
Q 012227          293 MPSNIKLPVSLNFRSQAVSV------DGI-LYFMRSDPEGIVSYNMVTGVWKQF  339 (468)
Q Consensus       293 ~p~~~~~~~~~~~~~~~v~~------~G~-lY~~~~~~~~i~~fD~~~~~w~~i  339 (468)
                      ++...        ....+..      +|+ +|+-+.....+..+|..+.+....
T Consensus       101 i~~~~--------~~~~~~~s~~~SpDG~~l~vs~~~~~~v~i~d~~t~~~~~~  146 (432)
T d1qksa2         101 IKIGS--------EARSIETSKMEGWEDKYAIAGAYWPPQYVIMDGETLEPKKI  146 (432)
T ss_dssp             EECCS--------EEEEEEECCSTTCTTTEEEEEEEETTEEEEEETTTCCEEEE
T ss_pred             EecCC--------CCCCeEEecccCCCCCEEEEEcCCCCeEEEEeCccccceee
Confidence            22110        1112222      565 566666667899999998876554

>d1ijqa1 b.68.5.1 (A:377-642) Low density lipoprotein (LDL) receptor {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: YWTD domain
family: YWTD domain
domain: Low density lipoprotein (LDL) receptor
species: Human (Homo sapiens) [TaxId: 9606]

Probab=89.76  E-value=5.3  Score=34.08  Aligned_cols=149  Identities=13%  Similarity=0.147  Sum_probs=80.1

Q ss_pred             EeeecCceEEEEEcCCceEEEEcCCCCceEecCCCCcCCcceeEEEEEEcCCCCCCCeEEEEEEec--CcEEEEeCCCCC
Q 012227          209 PVASAGGLVCFLDIGHRNFYVCNPLTQSFKELPARSVKVWSRVAVGMTLNGNSTSSGYKILWVGCD--GEYEIYDSLRNS  286 (468)
Q Consensus       209 ~~~s~~GLl~~~~~~~~~~~V~NP~T~~~~~LP~~~~~~~~~~~~~~~~d~~~~~~~ykVv~v~~~--~~v~vy~s~t~~  286 (468)
                      .+...+|.|++.+....++.++++-......+-.....    ...++..|+    ....+++....  ..++..+.....
T Consensus        83 AvD~~~~~lY~~d~~~~~I~v~~~~g~~~~~~~~~~~~----~P~~l~vd~----~~g~ly~~~~~~~~~I~r~~~dGs~  154 (266)
T d1ijqa1          83 AVDWIHSNIYWTDSVLGTVSVADTKGVKRKTLFRENGS----KPRAIVVDP----VHGFMYWTDWGTPAKIKKGGLNGVD  154 (266)
T ss_dssp             EEETTTTEEEEEETTTTEEEEEETTSSSEEEEEECTTC----CEEEEEEET----TTTEEEEEECSSSCEEEEEETTSCC
T ss_pred             EEeeccceEEEEecCCCEEEeEecCCceEEEEEcCCCC----CcceEEEEc----ccCeEEEeccCCCcceeEeccCCCc
Confidence            36667888888887777899999876665443221111    123455552    12345544322  124444443222


Q ss_pred             ccCCCCCCCCcccCcccccccceEEE---CCEEEEEEcCCCeEEEEECCCCeEEEeecCCCCCCC-CceEEEECCeEEEE
Q 012227          287 WTRPGSMPSNIKLPVSLNFRSQAVSV---DGILYFMRSDPEGIVSYNMVTGVWKQFIIPTPLHLN-DHTLAECGGRIMLV  362 (468)
Q Consensus       287 W~~~~~~p~~~~~~~~~~~~~~~v~~---~G~lY~~~~~~~~i~~fD~~~~~w~~i~~P~p~~~~-~~~l~~~~G~L~lv  362 (468)
                      -+.+..  ....       ...++.+   ++.|||.......|..+|+....-..+... ..... -..++..++.||..
T Consensus       155 ~~~l~~--~~~~-------~p~gl~iD~~~~~lYw~d~~~~~I~~~~~dG~~~~~~~~~-~~~~~~p~~lav~~~~ly~t  224 (266)
T d1ijqa1         155 IYSLVT--ENIQ-------WPNGITLDLLSGRLYWVDSKLHSISSIDVNGGNRKTILED-EKRLAHPFSLAVFEDKVFWT  224 (266)
T ss_dssp             EEEEEC--SSCS-------CEEEEEEETTTTEEEEEETTTTEEEEEETTSCSCEEEEEC-TTTTSSEEEEEEETTEEEEE
T ss_pred             eecccc--cccc-------eeeEEEeeccccEEEEecCCcCEEEEEECCCCCEEEEEeC-CCcccccEEEEEECCEEEEE
Confidence            211110  0111       1123434   689999988778999999976544443221 11111 23577889999986


Q ss_pred             EEEeeCCccEEEEEEEecC
Q 012227          363 GLLTKNAATCVCIWELQKM  381 (468)
Q Consensus       363 ~~~~~~~~~~i~Vw~ld~~  381 (468)
                      ....    .  .|++.+..
T Consensus       225 d~~~----~--~I~~~~~~  237 (266)
T d1ijqa1         225 DIIN----E--AIFSANRL  237 (266)
T ss_dssp             ETTT----T--EEEEEETT
T ss_pred             ECCC----C--eEEEEECC
Confidence            5321    1  56666653

>d2ovrb2 b.69.4.1 (B:2365-2706) F-box/WD repeat-containing protein 7, FBXW7 {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: F-box/WD repeat-containing protein 7, FBXW7
species: Human (Homo sapiens) [TaxId: 9606]

Probab=88.12  E-value=6.8  Score=33.16  Aligned_cols=106  Identities=12%  Similarity=0.118  Sum_probs=57.5

Q ss_pred             CceEEEEEcCCceEEEEcCCCCceEecCCCCcCCcceeEEEEEEcCCCCCCCeEEEEEEecCcEEEEeCCCCCccC-CCC
Q 012227          214 GGLVCFLDIGHRNFYVCNPLTQSFKELPARSVKVWSRVAVGMTLNGNSTSSGYKILWVGCDGEYEIYDSLRNSWTR-PGS  292 (468)
Q Consensus       214 ~GLl~~~~~~~~~~~V~NP~T~~~~~LP~~~~~~~~~~~~~~~~d~~~~~~~ykVv~v~~~~~v~vy~s~t~~W~~-~~~  292 (468)
                      +|-.++.......+.+||..+++........  .  ....++..++     . .++..+.++.+.+|+.....-.. +..
T Consensus       186 ~~~~l~s~~~dg~i~~~d~~~~~~~~~~~~~--~--~~v~~~~~~~-----~-~l~s~s~d~~i~iwd~~~~~~~~~~~~  255 (342)
T d2ovrb2         186 DGIHVVSGSLDTSIRVWDVETGNCIHTLTGH--Q--SLTSGMELKD-----N-ILVSGNADSTVKIWDIKTGQCLQTLQG  255 (342)
T ss_dssp             CSSEEEEEETTSCEEEEETTTCCEEEEECCC--C--SCEEEEEEET-----T-EEEEEETTSCEEEEETTTCCEEEEECS
T ss_pred             CCCEEEEEeCCCeEEEeecccceeeeEeccc--c--cceeEEecCC-----C-EEEEEcCCCEEEEEecccccccccccc
Confidence            4444444444567889998877755433311  1  1123333341     1 34444456679999987654321 111


Q ss_pred             CCCCcccCcccccccceEEECCEEEEEEcCCCeEEEEECCCCeE
Q 012227          293 MPSNIKLPVSLNFRSQAVSVDGILYFMRSDPEGIVSYNMVTGVW  336 (468)
Q Consensus       293 ~p~~~~~~~~~~~~~~~v~~~G~lY~~~~~~~~i~~fD~~~~~w  336 (468)
                      ....       ......+..++.+.+.++....|..+|+.+++.
T Consensus       256 ~~~~-------~~~~~~~~~~~~~~~s~s~Dg~i~iwd~~tg~~  292 (342)
T d2ovrb2         256 PNKH-------QSAVTCLQFNKNFVITSSDDGTVKLWDLKTGEF  292 (342)
T ss_dssp             TTSC-------SSCEEEEEECSSEEEEEETTSEEEEEETTTCCE
T ss_pred             ccee-------eeceeecccCCCeeEEEcCCCEEEEEECCCCCE
Confidence            0000       111234456777666666667899999998765

>d2dg1a1 b.68.6.1 (A:6-324) Lactonase Drp35 {Staphylococcus aureus [TaxId: 1280]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: Calcium-dependent phosphotriesterase
family: SGL-like
domain: Lactonase Drp35
species: Staphylococcus aureus [TaxId: 1280]

Probab=86.47  E-value=3.7  Score=36.09  Aligned_cols=201  Identities=11%  Similarity=0.099  Sum_probs=95.7

Q ss_pred             cCceEEEEEcCCceEEEEcCCCCceEecCCCCcCCcceeEEEEEEcCCCCCCCeEEEEEEec-----CcEEEEeCCCCCc
Q 012227          213 AGGLVCFLDIGHRNFYVCNPLTQSFKELPARSVKVWSRVAVGMTLNGNSTSSGYKILWVGCD-----GEYEIYDSLRNSW  287 (468)
Q Consensus       213 ~~GLl~~~~~~~~~~~V~NP~T~~~~~LP~~~~~~~~~~~~~~~~d~~~~~~~ykVv~v~~~-----~~v~vy~s~t~~W  287 (468)
                      .+|-|++.+....+++.+||.+++..........    ...++.+++     +.+++++...     ..+..++..++..
T Consensus        49 ~~G~Ly~~D~~~g~I~ri~p~g~~~~~~~~~~~~----~p~gla~~~-----dG~l~va~~~~~~~~~~i~~~~~~~~~~  119 (319)
T d2dg1a1          49 RQGQLFLLDVFEGNIFKINPETKEIKRPFVSHKA----NPAAIKIHK-----DGRLFVCYLGDFKSTGGIFAATENGDNL  119 (319)
T ss_dssp             TTSCEEEEETTTCEEEEECTTTCCEEEEEECSSS----SEEEEEECT-----TSCEEEEECTTSSSCCEEEEECTTSCSC
T ss_pred             CCCCEEEEECCCCEEEEEECCCCeEEEEEeCCCC----CeeEEEECC-----CCCEEEEecCCCccceeEEEEcCCCcee
Confidence            4566777776677899999998865543211111    123454442     1345544321     1255556655543


Q ss_pred             cCCC-CCCCCcccCcccccccceEEECCEEEEEEcC------CCeEEEEECCCCeEEEeecCCCCCCCCceEEEE-CC-e
Q 012227          288 TRPG-SMPSNIKLPVSLNFRSQAVSVDGILYFMRSD------PEGIVSYNMVTGVWKQFIIPTPLHLNDHTLAEC-GG-R  358 (468)
Q Consensus       288 ~~~~-~~p~~~~~~~~~~~~~~~v~~~G~lY~~~~~------~~~i~~fD~~~~~w~~i~~P~p~~~~~~~l~~~-~G-~  358 (468)
                      .... .....    .  ......+.-+|.+|+-...      ...+..+|+.......+.-+...   -..++.. +| .
T Consensus       120 ~~~~~~~~~~----~--~~nd~~~d~~G~l~vtd~~~~~~~~~g~v~~~~~dg~~~~~~~~~~~~---pnGia~s~dg~~  190 (319)
T d2dg1a1         120 QDIIEDLSTA----Y--CIDDMVFDSKGGFYFTDFRGYSTNPLGGVYYVSPDFRTVTPIIQNISV---ANGIALSTDEKV  190 (319)
T ss_dssp             EEEECSSSSC----C--CEEEEEECTTSCEEEEECCCBTTBCCEEEEEECTTSCCEEEEEEEESS---EEEEEECTTSSE
T ss_pred             eeeccCCCcc----c--CCcceeEEeccceeecccccccccCcceeEEEecccceeEEEeeccce---eeeeeeccccce
Confidence            3221 11100    0  0011122237888886532      23577888887766654221110   0123332 45 4


Q ss_pred             EEEEEEEeeCCccEEEEEEEecCC-CCeEEEEeeChhhhhcccCcceE-EEEEecCCEEEEEeeeCCCCeEEEEECCCCc
Q 012227          359 IMLVGLLTKNAATCVCIWELQKMT-LLWKEVDRMPNIWCLDFYGKHVR-MTCLGNKGLLMLSLRSRQMNRLVTYNVMSRE  436 (468)
Q Consensus       359 L~lv~~~~~~~~~~i~Vw~ld~~~-~~W~~v~~mp~~~~~~~~~~~~~-~~~~~~~~~I~~~~~~~~~~~l~~YD~~t~~  436 (468)
                      ||++...    ...+..+.++... ..+......+...    .+...+ -.++..+|.||+...  ..+.|.+||++.+.
T Consensus       191 lyvad~~----~~~I~~~d~~~~g~~~~~~~~~~~~~~----~~~~~PdGl~vD~~G~l~Va~~--~~g~V~~~~p~G~~  260 (319)
T d2dg1a1         191 LWVTETT----ANRLHRIALEDDGVTIQPFGATIPYYF----TGHEGPDSCCIDSDDNLYVAMY--GQGRVLVFNKRGYP  260 (319)
T ss_dssp             EEEEEGG----GTEEEEEEECTTSSSEEEEEEEEEEEC----CSSSEEEEEEEBTTCCEEEEEE--TTTEEEEECTTSCE
T ss_pred             EEEeccc----CCceEEEEEcCCCceeccccceeeecc----CCccceeeeeEcCCCCEEEEEc--CCCEEEEECCCCcE
Confidence            7765432    2334444444322 1222211111110    001111 234556777887543  35789999998777


Q ss_pred             EEEcc
Q 012227          437 WLKVP  441 (468)
Q Consensus       437 w~~v~  441 (468)
                      ..++.
T Consensus       261 l~~i~  265 (319)
T d2dg1a1         261 IGQIL  265 (319)
T ss_dssp             EEEEE
T ss_pred             EEEEe
Confidence            77663

>d1pjxa_ b.68.6.1 (A:) Diisopropylfluorophosphatase (phosphotriesterase, DFP) {Squid (Loligo vulgaris) [TaxId: 6622]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: Calcium-dependent phosphotriesterase
family: SGL-like
domain: Diisopropylfluorophosphatase (phosphotriesterase, DFP)
species: Squid (Loligo vulgaris) [TaxId: 6622]

Probab=85.85  E-value=10  Score=32.95  Aligned_cols=73  Identities=5%  Similarity=-0.049  Sum_probs=40.8

Q ss_pred             cCceEEEEEcC-------CceEEEEcCCCCceEecCCCCcCCcceeEEEEEEcCCCCCCCeEEEEEEecCcEEEEeCCCC
Q 012227          213 AGGLVCFLDIG-------HRNFYVCNPLTQSFKELPARSVKVWSRVAVGMTLNGNSTSSGYKILWVGCDGEYEIYDSLRN  285 (468)
Q Consensus       213 ~~GLl~~~~~~-------~~~~~V~NP~T~~~~~LP~~~~~~~~~~~~~~~~d~~~~~~~ykVv~v~~~~~v~vy~s~t~  285 (468)
                      .+|-+++.+..       ..+++.+||.++++..+..+..........++.+++  .  .-.+++......+.++++.+.
T Consensus        27 ~dG~ly~~~~~~~~~~~~~g~I~r~d~~~~~~~~~~~~~~~~~~g~P~Gl~~~~--d--g~~l~vad~~~~i~~~~~~g~  102 (314)
T d1pjxa_          27 KNGDFYIVAPEVEVNGKPAGEILRIDLKTGKKTVICKPEVNGYGGIPAGCQCDR--D--ANQLFVADMRLGLLVVQTDGT  102 (314)
T ss_dssp             TTSCEEEEETTCEETTEECCEEEEECTTTCCEEEEECCEETTEECCEEEEEECS--S--SSEEEEEETTTEEEEEETTSC
T ss_pred             CCCCEEEEECccccccccCCEEEEEECCCCcEEEEECCccccCCCcceeEEEeC--C--CCEEEEEECCCeEEEEeCCCc
Confidence            46666655432       246999999999877654432221122235566652  1  224555544456888888765


Q ss_pred             CccC
Q 012227          286 SWTR  289 (468)
Q Consensus       286 ~W~~  289 (468)
                      ....
T Consensus       103 ~~~~  106 (314)
T d1pjxa_         103 FEEI  106 (314)
T ss_dssp             EEEC
T ss_pred             EEEE
Confidence            5443

>d1erja_ b.69.4.1 (A:) Tup1, C-terminal domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Tup1, C-terminal domain
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=84.48  E-value=12  Score=32.56  Aligned_cols=157  Identities=13%  Similarity=0.102  Sum_probs=66.3

Q ss_pred             cCceEEEEEcCCceEEEEcCCCCceEec-CCCC--cCCcceeEEEEEEcCCCCCCCeEEEEEEecCcEEEEeCCCCCccC
Q 012227          213 AGGLVCFLDIGHRNFYVCNPLTQSFKEL-PARS--VKVWSRVAVGMTLNGNSTSSGYKILWVGCDGEYEIYDSLRNSWTR  289 (468)
Q Consensus       213 ~~GLl~~~~~~~~~~~V~NP~T~~~~~L-P~~~--~~~~~~~~~~~~~d~~~~~~~ykVv~v~~~~~v~vy~s~t~~W~~  289 (468)
                      .+|-+++.....+.+.++|..++....- ....  ..........+.+.+    +.-.++..+.++.+.+||..+..-..
T Consensus       215 ~~~~~l~~~~~d~~i~i~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~s~----~~~~l~s~~~d~~i~iwd~~~~~~~~  290 (388)
T d1erja_         215 GDGKYIAAGSLDRAVRVWDSETGFLVERLDSENESGTGHKDSVYSVVFTR----DGQSVVSGSLDRSVKLWNLQNANNKS  290 (388)
T ss_dssp             TTCCEEEEEETTSCEEEEETTTCCEEEEEC------CCCSSCEEEEEECT----TSSEEEEEETTSEEEEEEC-------
T ss_pred             CCCCeEEEEcCCCeEEEeecccCccceeeccccccccCCCCCEEEEEECC----CCCEEEEEECCCcEEEEeccCCcccc
Confidence            3554444444445788888887765432 2111  000011122333431    12234444446679999876554322


Q ss_pred             CCCCCCCcccCccccc---ccceEEE--CCEEEEEEcCCCeEEEEECCCCeEEEeecCCCCCCCC-ceEEEE-------C
Q 012227          290 PGSMPSNIKLPVSLNF---RSQAVSV--DGILYFMRSDPEGIVSYNMVTGVWKQFIIPTPLHLND-HTLAEC-------G  356 (468)
Q Consensus       290 ~~~~p~~~~~~~~~~~---~~~~v~~--~G~lY~~~~~~~~i~~fD~~~~~w~~i~~P~p~~~~~-~~l~~~-------~  356 (468)
                      ....+...........   .-..+.+  +|.+.+.+...+.|..||+.+.+.... +..  +... ..+...       +
T Consensus       291 ~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~sg~~dg~i~vwd~~~~~~~~~-l~~--H~~~V~~~~~~~~~~~spd  367 (388)
T d1erja_         291 DSKTPNSGTCEVTYIGHKDFVLSVATTQNDEYILSGSKDRGVLFWDKKSGNPLLM-LQG--HRNSVISVAVANGSSLGPE  367 (388)
T ss_dssp             --------CEEEEEECCSSCEEEEEECGGGCEEEEEETTSEEEEEETTTCCEEEE-EEC--CSSCEEEEEECSSCTTCTT
T ss_pred             ccccccccceeeecccccceEEEEEECCCCCEEEEEeCCCEEEEEECCCCcEEEE-EeC--CCCCEEEEEEecCcccCCC
Confidence            1111110000000000   0011222  455555555556899999988764332 221  1111 112211       4


Q ss_pred             CeEEEEEEEeeCCccEEEEEEEec
Q 012227          357 GRIMLVGLLTKNAATCVCIWELQK  380 (468)
Q Consensus       357 G~L~lv~~~~~~~~~~i~Vw~ld~  380 (468)
                      |.+++.+. .   ..+|.||.+++
T Consensus       368 ~~~l~s~s-~---Dg~I~iW~~~k  387 (388)
T d1erja_         368 YNVFATGS-G---DCKARIWKYKK  387 (388)
T ss_dssp             CEEEEEEE-T---TSEEEEEEEEE
T ss_pred             CCEEEEEe-C---CCEEEEEeeee
Confidence            66655443 2   25789998864

>d1nr0a1 b.69.4.1 (A:2-312) Actin interacting protein 1 {Nematode (Caenorhabditis elegans) [TaxId: 6239]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Actin interacting protein 1
species: Nematode (Caenorhabditis elegans) [TaxId: 6239]

Probab=83.76  E-value=12  Score=32.05  Aligned_cols=199  Identities=11%  Similarity=0.018  Sum_probs=90.8

Q ss_pred             ecCceEEEEEcCCceEEEEcCCCCceEecCCCCcCCcceeEEEEEEcCCCCCCCeEEEEEEec--CcEEEEeCCCCCccC
Q 012227          212 SAGGLVCFLDIGHRNFYVCNPLTQSFKELPARSVKVWSRVAVGMTLNGNSTSSGYKILWVGCD--GEYEIYDSLRNSWTR  289 (468)
Q Consensus       212 s~~GLl~~~~~~~~~~~V~NP~T~~~~~LP~~~~~~~~~~~~~~~~d~~~~~~~ykVv~v~~~--~~v~vy~s~t~~W~~  289 (468)
                      +-+|-+++.+...+.+.|||..+++..............  ..+.+.+   .+ -.+++.+.+  ..+.+++..+++-..
T Consensus        67 sp~g~~latg~~dg~i~iwd~~~~~~~~~~~~~~~~~~v--~~v~~s~---d~-~~l~~~~~~~~~~~~v~~~~~~~~~~  140 (311)
T d1nr0a1          67 SPSGYYCASGDVHGNVRIWDTTQTTHILKTTIPVFSGPV--KDISWDS---ES-KRIAAVGEGRERFGHVFLFDTGTSNG  140 (311)
T ss_dssp             CTTSSEEEEEETTSEEEEEESSSTTCCEEEEEECSSSCE--EEEEECT---TS-CEEEEEECCSSCSEEEEETTTCCBCB
T ss_pred             eCCCCeEeccccCceEeeeeeeccccccccccccccCcc--ccccccc---cc-cccccccccccccccccccccccccc
Confidence            446766666655668999998887643211111111122  2333331   11 123333322  237888877654321


Q ss_pred             CCCCCCCcccCcccccccceEEE--CCEE-EEEEcCCCeEEEEECCCCeEEEeecCCCCCCCCceEEEE--CCeEEEEEE
Q 012227          290 PGSMPSNIKLPVSLNFRSQAVSV--DGIL-YFMRSDPEGIVSYNMVTGVWKQFIIPTPLHLNDHTLAEC--GGRIMLVGL  364 (468)
Q Consensus       290 ~~~~p~~~~~~~~~~~~~~~v~~--~G~l-Y~~~~~~~~i~~fD~~~~~w~~i~~P~p~~~~~~~l~~~--~G~L~lv~~  364 (468)
                        .+.....       .-..+.+  +|.. .+.+.....|..||..+.+...... .  +......+..  +|++++++.
T Consensus       141 --~l~~h~~-------~v~~v~~~~~~~~~l~sgs~d~~i~i~d~~~~~~~~~~~-~--~~~~i~~v~~~p~~~~l~~~~  208 (311)
T d1nr0a1         141 --NLTGQAR-------AMNSVDFKPSRPFRIISGSDDNTVAIFEGPPFKFKSTFG-E--HTKFVHSVRYNPDGSLFASTG  208 (311)
T ss_dssp             --CCCCCSS-------CEEEEEECSSSSCEEEEEETTSCEEEEETTTBEEEEEEC-C--CSSCEEEEEECTTSSEEEEEE
T ss_pred             --ccccccc-------ccccccccccceeeecccccccccccccccccccccccc-c--ccccccccccCcccccccccc
Confidence              1111100       0112323  3443 3334455678899999876554311 1  1112222333  677666543


Q ss_pred             EeeCCccEEEEEEEecCCCCeEEEEeeChhhhhcccCcceEEE--EEecCCEEEEEeeeCCCCeEEEEECCCCcEEE
Q 012227          365 LTKNAATCVCIWELQKMTLLWKEVDRMPNIWCLDFYGKHVRMT--CLGNKGLLMLSLRSRQMNRLVTYNVMSREWLK  439 (468)
Q Consensus       365 ~~~~~~~~i~Vw~ld~~~~~W~~v~~mp~~~~~~~~~~~~~~~--~~~~~~~I~~~~~~~~~~~l~~YD~~t~~w~~  439 (468)
                      .    ...+.+|.+..    ...+..+...... ..+....+.  ++..++..++. .+ ..+.+..||+++++..+
T Consensus       209 ~----d~~v~~~d~~~----~~~~~~~~~~~~~-~~~h~~~V~~~~~s~~~~~l~t-gs-~Dg~v~iwd~~t~~~~~  274 (311)
T d1nr0a1         209 G----DGTIVLYNGVD----GTKTGVFEDDSLK-NVAHSGSVFGLTWSPDGTKIAS-AS-ADKTIKIWNVATLKVEK  274 (311)
T ss_dssp             T----TSCEEEEETTT----CCEEEECBCTTSS-SCSSSSCEEEEEECTTSSEEEE-EE-TTSEEEEEETTTTEEEE
T ss_pred             c----ccccccccccc----ccccccccccccc-cccccccccccccCCCCCEEEE-Ee-CCCeEEEEECCCCcEEE
Confidence            2    24678885443    2333333322110 111111122  23333343332 22 35689999999887543

>d1nr0a2 b.69.4.1 (A:313-611) Actin interacting protein 1 {Nematode (Caenorhabditis elegans) [TaxId: 6239]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Actin interacting protein 1
species: Nematode (Caenorhabditis elegans) [TaxId: 6239]

Probab=83.17  E-value=2.9  Score=35.56  Aligned_cols=148  Identities=10%  Similarity=0.023  Sum_probs=70.8

Q ss_pred             cCceEEEEEcCCceEEEEcCCCCceEecCCCCcCCcceeEEEEEEcCCCCCCCeEEEEEEecCcEEEEeCCCCCccCC-C
Q 012227          213 AGGLVCFLDIGHRNFYVCNPLTQSFKELPARSVKVWSRVAVGMTLNGNSTSSGYKILWVGCDGEYEIYDSLRNSWTRP-G  291 (468)
Q Consensus       213 ~~GLl~~~~~~~~~~~V~NP~T~~~~~LP~~~~~~~~~~~~~~~~d~~~~~~~ykVv~v~~~~~v~vy~s~t~~W~~~-~  291 (468)
                      .+|-+++.......+.+||..+++...+..... ....  ..+.+++   .+ -.++..+.++.+.+|+..++..... .
T Consensus       146 ~~~~~l~~g~~dg~i~~~d~~~~~~~~~~~~~~-~~~i--~~~~~~~---~~-~~l~~~~~d~~i~~~~~~~~~~~~~~~  218 (299)
T d1nr0a2         146 NDKQFVAVGGQDSKVHVYKLSGASVSEVKTIVH-PAEI--TSVAFSN---NG-AFLVATDQSRKVIPYSVANNFELAHTN  218 (299)
T ss_dssp             TTSCEEEEEETTSEEEEEEEETTEEEEEEEEEC-SSCE--EEEEECT---TS-SEEEEEETTSCEEEEEGGGTTEESCCC
T ss_pred             ccccccccccccccccccccccccccccccccc-cccc--ccccccc---cc-ccccccccccccccccccccccccccc
Confidence            345444444445578888887776554432211 1111  2333331   11 2334344456799999877654332 1


Q ss_pred             CCCCCcccCcccccccceEEE--CCEEEEEEcCCCeEEEEECCCCeEEEeecCCCCCCCCce-EEEECCeEEEEEEEeeC
Q 012227          292 SMPSNIKLPVSLNFRSQAVSV--DGILYFMRSDPEGIVSYNMVTGVWKQFIIPTPLHLNDHT-LAECGGRIMLVGLLTKN  368 (468)
Q Consensus       292 ~~p~~~~~~~~~~~~~~~v~~--~G~lY~~~~~~~~i~~fD~~~~~w~~i~~P~p~~~~~~~-l~~~~G~L~lv~~~~~~  368 (468)
                      ..... ..      .-.++.+  +|.+.+.++....|..+|+.+.....+............ +...+|+..+.+. .  
T Consensus       219 ~~~~h-~~------~v~~l~~s~~~~~l~sgs~dg~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~l~s~s-~--  288 (299)
T d1nr0a2         219 SWTFH-TA------KVACVSWSPDNVRLATGSLDNSVIVWNMNKPSDHPIIIKGAHAMSSVNSVIWLNETTIVSAG-Q--  288 (299)
T ss_dssp             CCCCC-SS------CEEEEEECTTSSEEEEEETTSCEEEEETTCTTSCCEEETTSSTTSCEEEEEEEETTEEEEEE-T--
T ss_pred             ccccc-cc------ccccccccccccceEEEcCCCEEEEEECCCCCcceEEEecCCCCCcEEEEEECCCCEEEEEe-C--
Confidence            11111 00      0112222  566555565556899999887654332122211112222 2334565544332 2  


Q ss_pred             CccEEEEEEE
Q 012227          369 AATCVCIWEL  378 (468)
Q Consensus       369 ~~~~i~Vw~l  378 (468)
                       ...++||.+
T Consensus       289 -D~~i~iWdl  297 (299)
T d1nr0a2         289 -DSNIKFWNV  297 (299)
T ss_dssp             -TSCEEEEEC
T ss_pred             -CCEEEEEec
Confidence             257899965

>d1kb0a2 b.70.1.1 (A:1-573) Quinoprotein alcohol dehydrogenase, N-terminal domain {Comamonas testosteroni [TaxId: 285]}

class: All beta proteins
fold: 8-bladed beta-propeller
superfamily: Quinoprotein alcohol dehydrogenase-like
family: Quinoprotein alcohol dehydrogenase-like
domain: Quinoprotein alcohol dehydrogenase, N-terminal domain
species: Comamonas testosteroni [TaxId: 285]

Probab=82.72  E-value=5.5  Score=38.36  Aligned_cols=121  Identities=17%  Similarity=0.131  Sum_probs=65.4

Q ss_pred             ccceEEECCEEEEEEcCCCeEEEEECCCC--eEEEee-cCC------CCCCCCceEEEECCeEEEEEEEeeCCccEEEEE
Q 012227          306 RSQAVSVDGILYFMRSDPEGIVSYNMVTG--VWKQFI-IPT------PLHLNDHTLAECGGRIMLVGLLTKNAATCVCIW  376 (468)
Q Consensus       306 ~~~~v~~~G~lY~~~~~~~~i~~fD~~~~--~w~~i~-~P~------p~~~~~~~l~~~~G~L~lv~~~~~~~~~~i~Vw  376 (468)
                      ...+++++|++|+.+.. ..|.++|.+|+  .|+.-. .+.      ........++..+|++++...       .-.++
T Consensus        70 ~stPiv~~g~vyv~t~~-~~v~AlDa~TG~~~W~~~~~~~~~~~~~~~~~~~~~g~~~~~~~v~~~t~-------~g~l~  141 (573)
T d1kb0a2          70 EATPVVVDGIMYVSASW-SVVHAIDTRTGNRIWTYDPQIDRSTGFKGCCDVVNRGVALWKGKVYVGAW-------DGRLI  141 (573)
T ss_dssp             CCCCEEETTEEEEECGG-GCEEEEETTTTEEEEEECCCCCGGGGGGSSSCSCCCCCEEETTEEEEECT-------TSEEE
T ss_pred             EECCEEECCEEEEECCC-CeEEEEeCCCCCeEEEeCCCCCcccccccccccccccceEECCcEEEEec-------cccee
Confidence            35578899999987643 57999999987  566421 110      011123456778888876532       11577


Q ss_pred             EEecCC--CCeEEEEeeChhhhhcccCcceEEEEEecCCEEEEEeee---CCCCeEEEEECCCCcEEE
Q 012227          377 ELQKMT--LLWKEVDRMPNIWCLDFYGKHVRMTCLGNKGLLMLSLRS---RQMNRLVTYNVMSREWLK  439 (468)
Q Consensus       377 ~ld~~~--~~W~~v~~mp~~~~~~~~~~~~~~~~~~~~~~I~~~~~~---~~~~~l~~YD~~t~~w~~  439 (468)
                      .||..+  ..|+..  +.......+ ......  +..+|.|++....   ...+.|..||.+|++..+
T Consensus       142 alda~tG~~~W~~~--~~~~~~~~~-~~~~~p--~v~~~~vivg~~~~~~~~~G~v~a~D~~TG~~~W  204 (573)
T d1kb0a2         142 ALDAATGKEVWHQN--TFEGQKGSL-TITGAP--RVFKGKVIIGNGGAEYGVRGYITAYDAETGERKW  204 (573)
T ss_dssp             EEETTTCCEEEEEE--TTTTCCSSC-BCCSCC--EEETTEEEECCBCTTTCCBCEEEEEETTTCCEEE
T ss_pred             eeccccccceeccc--CccCCcceE-Eeecce--EEEeccEEEeeccccccccceEEEEecCCcccee
Confidence            777654  356543  111110000 000011  1126777662221   124579999999997433

>d1erja_ b.69.4.1 (A:) Tup1, C-terminal domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Tup1, C-terminal domain
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=82.61  E-value=14  Score=32.02  Aligned_cols=148  Identities=16%  Similarity=0.106  Sum_probs=68.6

Q ss_pred             ecCceEEEEEcCCceEEEEcCCCCceEecCCCCcCCcceeEEEEEEcCCCCCCCeEEEEEEecCcEEEEeCCCCCccCCC
Q 012227          212 SAGGLVCFLDIGHRNFYVCNPLTQSFKELPARSVKVWSRVAVGMTLNGNSTSSGYKILWVGCDGEYEIYDSLRNSWTRPG  291 (468)
Q Consensus       212 s~~GLl~~~~~~~~~~~V~NP~T~~~~~LP~~~~~~~~~~~~~~~~d~~~~~~~ykVv~v~~~~~v~vy~s~t~~W~~~~  291 (468)
                      +.+|-+++.....+.+.+||..+++.......  .....  ..+...    .....++..+.++.+.+||..+..-....
T Consensus       130 s~~~~~l~s~~~dg~v~i~~~~~~~~~~~~~~--h~~~v--~~~~~~----~~~~~~~~~~~~~~i~~~d~~~~~~~~~~  201 (388)
T d1erja_         130 SPDGKFLATGAEDRLIRIWDIENRKIVMILQG--HEQDI--YSLDYF----PSGDKLVSGSGDRTVRIWDLRTGQCSLTL  201 (388)
T ss_dssp             CTTSSEEEEEETTSCEEEEETTTTEEEEEECC--CSSCE--EEEEEC----TTSSEEEEEETTSEEEEEETTTTEEEEEE
T ss_pred             CCCCCcceeccccccccccccccccccccccc--ccccc--cccccc----cccccccccccceeeeeeecccccccccc
Confidence            34555555555556788999888876654331  11111  222222    12234444444556888887765422111


Q ss_pred             CCCCCcccCcccccccceEE--ECCEEEEEEcCCCeEEEEECCCCeEEEeecCC-C---CCCCCceEEEE--CCeEEEEE
Q 012227          292 SMPSNIKLPVSLNFRSQAVS--VDGILYFMRSDPEGIVSYNMVTGVWKQFIIPT-P---LHLNDHTLAEC--GGRIMLVG  363 (468)
Q Consensus       292 ~~p~~~~~~~~~~~~~~~v~--~~G~lY~~~~~~~~i~~fD~~~~~w~~i~~P~-p---~~~~~~~l~~~--~G~L~lv~  363 (468)
                      ....         .......  .+|.+.+.+.....|..+|..+........+. .   .+.....-+..  +|++.+++
T Consensus       202 ~~~~---------~~~~~~~~~~~~~~l~~~~~d~~i~i~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~s~~~~~l~s~  272 (388)
T d1erja_         202 SIED---------GVTTVAVSPGDGKYIAAGSLDRAVRVWDSETGFLVERLDSENESGTGHKDSVYSVVFTRDGQSVVSG  272 (388)
T ss_dssp             ECSS---------CEEEEEECSTTCCEEEEEETTSCEEEEETTTCCEEEEEC------CCCSSCEEEEEECTTSSEEEEE
T ss_pred             cccc---------ccccccccCCCCCeEEEEcCCCeEEEeecccCccceeeccccccccCCCCCEEEEEECCCCCEEEEE
Confidence            1000         0001111  14555555555567888999877654321111 1   11111122222  56665544


Q ss_pred             EEeeCCccEEEEEEEec
Q 012227          364 LLTKNAATCVCIWELQK  380 (468)
Q Consensus       364 ~~~~~~~~~i~Vw~ld~  380 (468)
                      ..    ...+.+|.+..
T Consensus       273 ~~----d~~i~iwd~~~  285 (388)
T d1erja_         273 SL----DRSVKLWNLQN  285 (388)
T ss_dssp             ET----TSEEEEEEC--
T ss_pred             EC----CCcEEEEeccC
Confidence            32    25788897654

>d1l0qa2 b.69.2.3 (A:1-301) Surface layer protein {Archaeon Methanosarcina mazei [TaxId: 2209]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase
family: YVTN repeat
domain: Surface layer protein
species: Archaeon Methanosarcina mazei [TaxId: 2209]

Probab=82.25  E-value=12  Score=30.97  Aligned_cols=219  Identities=11%  Similarity=0.106  Sum_probs=98.7

Q ss_pred             CCcceecCCCCccc-CCCCCCCCCCcEEEEeeecCceEEEEEcCCceEEEEcCCCCceEe-cCCCCcCCcceeEEEEEEc
Q 012227          181 NSGAMYDPSLKKWH-HPTISSLPTKMIILPVASAGGLVCFLDIGHRNFYVCNPLTQSFKE-LPARSVKVWSRVAVGMTLN  258 (468)
Q Consensus       181 ~~~~~~dp~~~~w~-~~~l~~~p~~~~~~~~~s~~GLl~~~~~~~~~~~V~NP~T~~~~~-LP~~~~~~~~~~~~~~~~d  258 (468)
                      .....+|+.+++.. .+++...|   ..+.+...+..|++.......+.+||..|++... ++...    ..  .++.++
T Consensus        12 ~~v~v~D~~t~~~~~~i~~g~~p---~~va~spdG~~l~v~~~~~~~i~v~d~~t~~~~~~~~~~~----~~--~~~~~~   82 (301)
T d1l0qa2          12 DNISVIDVTSNKVTATIPVGSNP---MGAVISPDGTKVYVANAHSNDVSIIDTATNNVIATVPAGS----SP--QGVAVS   82 (301)
T ss_dssp             TEEEEEETTTTEEEEEEECSSSE---EEEEECTTSSEEEEEEGGGTEEEEEETTTTEEEEEEECSS----SE--EEEEEC
T ss_pred             CEEEEEECCCCeEEEEEECCCCc---eEEEEeCCCCEEEEEECCCCEEEEEECCCCceeeeeeccc----cc--cccccc
Confidence            33567787776532 22222222   2231333334566666666789999999987653 33311    11  233333


Q ss_pred             CCCCCCCeEEEEEEe-cCcEEEEeCCCCCccCCCCCCCCcccCcccccccceEEE--CCEE-EEEEcCCCeEEEEECCCC
Q 012227          259 GNSTSSGYKILWVGC-DGEYEIYDSLRNSWTRPGSMPSNIKLPVSLNFRSQAVSV--DGIL-YFMRSDPEGIVSYNMVTG  334 (468)
Q Consensus       259 ~~~~~~~ykVv~v~~-~~~v~vy~s~t~~W~~~~~~p~~~~~~~~~~~~~~~v~~--~G~l-Y~~~~~~~~i~~fD~~~~  334 (468)
                         ..+.+ +++.+. +..+.+++..+++-...-....          ....+.+  +|.. +........+..+|..+.
T Consensus        83 ---~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----------~~~~~~~~~dg~~~~~~~~~~~~~~~~~~~~~  148 (301)
T d1l0qa2          83 ---PDGKQ-VYVTNMASSTLSVIDTTSNTVAGTVKTGK----------SPLGLALSPDGKKLYVTNNGDKTVSVINTVTK  148 (301)
T ss_dssp             ---TTSSE-EEEEETTTTEEEEEETTTTEEEEEEECSS----------SEEEEEECTTSSEEEEEETTTTEEEEEETTTT
T ss_pred             ---ccccc-ccccccccceeeecccccceeeeeccccc----------cceEEEeecCCCeeeeeeccccceeeeecccc
Confidence               12223 333332 3347777777654322110000          0111112  4543 344444557888888887


Q ss_pred             eEEEeecCCCCCCCCceEEEE-CCeEEEEEEEeeCCccEEEEEEEecCCCCeEEEEeeChhhhhcccCcceEEEEEecCC
Q 012227          335 VWKQFIIPTPLHLNDHTLAEC-GGRIMLVGLLTKNAATCVCIWELQKMTLLWKEVDRMPNIWCLDFYGKHVRMTCLGNKG  413 (468)
Q Consensus       335 ~w~~i~~P~p~~~~~~~l~~~-~G~L~lv~~~~~~~~~~i~Vw~ld~~~~~W~~v~~mp~~~~~~~~~~~~~~~~~~~~~  413 (468)
                      ..... .+....  ...++.. +++..++..   .+...+.+|  .....+.......+...        ..+.+...++
T Consensus       149 ~~~~~-~~~~~~--~~~~~~~~~~~~~~~~~---~~~~~~~~~--~~~~~~~~~~~~~~~~~--------~~~~~~~~g~  212 (301)
T d1l0qa2         149 AVINT-VSVGRS--PKGIAVTPDGTKVYVAN---FDSMSISVI--DTVTNSVIDTVKVEAAP--------SGIAVNPEGT  212 (301)
T ss_dssp             EEEEE-EECCSS--EEEEEECTTSSEEEEEE---TTTTEEEEE--ETTTTEEEEEEECSSEE--------EEEEECTTSS
T ss_pred             ceeee-cccCCC--ceEEEeeccccceeeec---ccccccccc--cccceeeeecccccCCc--------ceeecccccc
Confidence            76543 222111  1122222 344333332   122334444  32223332222221110        0122223556


Q ss_pred             EEEEEeeeCCCCeEEEEECCCCcEE
Q 012227          414 LLMLSLRSRQMNRLVTYNVMSREWL  438 (468)
Q Consensus       414 ~I~~~~~~~~~~~l~~YD~~t~~w~  438 (468)
                      .+|+.........+.++|+.+++..
T Consensus       213 ~~~v~~~~~~~~~v~v~D~~t~~~~  237 (301)
T d1l0qa2         213 KAYVTNVDKYFNTVSMIDTGTNKIT  237 (301)
T ss_dssp             EEEEEEECSSCCEEEEEETTTTEEE
T ss_pred             ccccccccceeeeeeeeecCCCeEE
Confidence            6666544444567889999888654

>d1npea_ b.68.5.1 (A:) Nidogen {Mouse (Mus musculus) [TaxId: 10090]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: YWTD domain
family: YWTD domain
domain: Nidogen
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=81.99  E-value=14  Score=31.28  Aligned_cols=148  Identities=8%  Similarity=0.073  Sum_probs=81.7

Q ss_pred             EeeecCceEEEEEcCCceEEEEcCCCCceEecCCCCcCCcceeEEEEEEcCCCCCCCeEEEEEEec-C--cEEEEeCCCC
Q 012227          209 PVASAGGLVCFLDIGHRNFYVCNPLTQSFKELPARSVKVWSRVAVGMTLNGNSTSSGYKILWVGCD-G--EYEIYDSLRN  285 (468)
Q Consensus       209 ~~~s~~GLl~~~~~~~~~~~V~NP~T~~~~~LP~~~~~~~~~~~~~~~~d~~~~~~~ykVv~v~~~-~--~v~vy~s~t~  285 (468)
                      .++..+|.|++.+....++.++|+-....+.+-.....    ...++..|+  .  ...+++.... .  .++..+....
T Consensus        85 AvD~~~~~lY~~d~~~~~I~~~~~dg~~~~~l~~~~l~----~p~~l~vdp--~--~g~ly~t~~~~~~~~I~r~~~dG~  156 (263)
T d1npea_          85 ALDHLGRTIFWTDSQLDRIEVAKMDGTQRRVLFDTGLV----NPRGIVTDP--V--RGNLYWTDWNRDNPKIETSHMDGT  156 (263)
T ss_dssp             EEETTTTEEEEEETTTTEEEEEETTSCSCEEEECSSCS----SEEEEEEET--T--TTEEEEEECCSSSCEEEEEETTSC
T ss_pred             EEeccCCeEEEeccCCCEEEEEecCCceEEEEeccccc----CCcEEEEec--c--cCcEEEeecCCCCcEEEEecCCCC
Confidence            35667888888887777899999876655544332111    123455562  1  2345544321 1  2444444322


Q ss_pred             CccCCCCCCCCcccCcccccccceEEE---CCEEEEEEcCCCeEEEEECCCCeEEEeecCCCCCCCCceEEEECCeEEEE
Q 012227          286 SWTRPGSMPSNIKLPVSLNFRSQAVSV---DGILYFMRSDPEGIVSYNMVTGVWKQFIIPTPLHLNDHTLAECGGRIMLV  362 (468)
Q Consensus       286 ~W~~~~~~p~~~~~~~~~~~~~~~v~~---~G~lY~~~~~~~~i~~fD~~~~~w~~i~~P~p~~~~~~~l~~~~G~L~lv  362 (468)
                      .-+.+..  ....       ...++.+   +++|||.....+.|..+|+....-..+....+   .-..++..+|.||..
T Consensus       157 ~~~~i~~--~~~~-------~P~glaiD~~~~~lYw~d~~~~~I~~~~~~g~~~~~v~~~~~---~P~~lav~~~~lYwt  224 (263)
T d1npea_         157 NRRILAQ--DNLG-------LPNGLTFDAFSSQLCWVDAGTHRAECLNPAQPGRRKVLEGLQ---YPFAVTSYGKNLYYT  224 (263)
T ss_dssp             CCEEEEC--TTCS-------CEEEEEEETTTTEEEEEETTTTEEEEEETTEEEEEEEEECCC---SEEEEEEETTEEEEE
T ss_pred             Cceeeee--eccc-------ccceEEEeecCcEEEEEeCCCCEEEEEECCCCCeEEEECCCC---CcEEEEEECCEEEEE
Confidence            2111110  0111       1124444   58999998777899999998766555422111   113577789999987


Q ss_pred             EEEeeCCccEEEEEEEecCC
Q 012227          363 GLLTKNAATCVCIWELQKMT  382 (468)
Q Consensus       363 ~~~~~~~~~~i~Vw~ld~~~  382 (468)
                      ....      -.|++.+..+
T Consensus       225 d~~~------~~I~~~~~~~  238 (263)
T d1npea_         225 DWKT------NSVIAMDLAI  238 (263)
T ss_dssp             ETTT------TEEEEEETTT
T ss_pred             ECCC------CEEEEEECCC
Confidence            5321      2677777653

>d1qfma1 b.69.7.1 (A:1-430) Prolyl oligopeptidase, N-terminal domain {Pig (Sus scrofa) [TaxId: 9823]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: Peptidase/esterase 'gauge' domain
family: Prolyl oligopeptidase, N-terminal domain
domain: Prolyl oligopeptidase, N-terminal domain
species: Pig (Sus scrofa) [TaxId: 9823]

Probab=81.00  E-value=11  Score=34.29  Aligned_cols=115  Identities=9%  Similarity=0.036  Sum_probs=62.3

Q ss_pred             ECCEEEEEEcC---CCeEEEEECCC---CeEEEeecCCCCCCCCceEEEE-CCeEEEEEEEeeCCccEEEEEEEecCCCC
Q 012227          312 VDGILYFMRSD---PEGIVSYNMVT---GVWKQFIIPTPLHLNDHTLAEC-GGRIMLVGLLTKNAATCVCIWELQKMTLL  384 (468)
Q Consensus       312 ~~G~lY~~~~~---~~~i~~fD~~~---~~w~~i~~P~p~~~~~~~l~~~-~G~L~lv~~~~~~~~~~i~Vw~ld~~~~~  384 (468)
                      .++.+|+++..   ...|+..|+.+   ..|..+ +|..........+.. ++.|.+ .... +....+  ..++..++.
T Consensus       296 ~~~~~~~~Tn~~a~~~~L~~~~~~~~~~~~w~~v-i~~~~~~~~~~~~~~~~~~lvl-~~~~-~~~~~l--~v~~~~~~~  370 (430)
T d1qfma1         296 EGTVFTFKTNRHSPNYRLINIDFTDPEESKWKVL-VPEHEKDVLEWVACVRSNFLVL-CYLH-DVKNTL--QLHDLATGA  370 (430)
T ss_dssp             ETTEEEEEECTTCTTCEEEEEETTBCCGGGCEEE-ECCCSSCEEEEEEEETTTEEEE-EEEE-TTEEEE--EEEETTTCC
T ss_pred             CCceeecccCcccccceeEEecCCCCccccceEE-ecccCcceeeeEEEEECCEEEE-EEEc-CCEeEE--EEEECCCCc
Confidence            46778887742   35788888764   468876 443322211223334 455544 3322 233444  445666678


Q ss_pred             eEEEEeeChhhhhcccCcceEEEEEecCCEEEEEeeeC-CCCeEEEEECCCCcEE
Q 012227          385 WKEVDRMPNIWCLDFYGKHVRMTCLGNKGLLMLSLRSR-QMNRLVTYNVMSREWL  438 (468)
Q Consensus       385 W~~v~~mp~~~~~~~~~~~~~~~~~~~~~~I~~~~~~~-~~~~l~~YD~~t~~w~  438 (468)
                      |.++...+.....       .+..-..++.+++...+. ....++.||+.+++.+
T Consensus       371 ~~~~~~~~~~sv~-------~~~~~~~~~~~~~~~ss~~tP~~~y~~Dl~t~~~~  418 (430)
T d1qfma1         371 LLKIFPLEVGSVV-------GYSGQKKDTEIFYQFTSFLSPGIIYHCDLTKEELE  418 (430)
T ss_dssp             EEEEECCCSSEEE-------EEECCTTCSEEEEEEECSSCCCEEEEEETTSSSCC
T ss_pred             EEEecCCCCceEe-------eccCCCCCCEEEEEEcCCCCCCeEEEEECCCCCcc
Confidence            8877443321110       011111456777754443 4678999999998653

>d1k8kc_ b.69.4.1 (C:) Arp2/3 complex 41 kDa subunit ARPC1 {Cow (Bos taurus) [TaxId: 9913]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Arp2/3 complex 41 kDa subunit ARPC1
species: Cow (Bos taurus) [TaxId: 9913]

Probab=80.97  E-value=11  Score=33.14  Aligned_cols=72  Identities=8%  Similarity=0.070  Sum_probs=40.8

Q ss_pred             cCceEEEEEcCCceEEEEcCCCCceEecCCCCcCCcceeEEEEEEcCCCCCCCeEEEEEEecCcEEEEeCCCCCccCC
Q 012227          213 AGGLVCFLDIGHRNFYVCNPLTQSFKELPARSVKVWSRVAVGMTLNGNSTSSGYKILWVGCDGEYEIYDSLRNSWTRP  290 (468)
Q Consensus       213 ~~GLl~~~~~~~~~~~V~NP~T~~~~~LP~~~~~~~~~~~~~~~~d~~~~~~~ykVv~v~~~~~v~vy~s~t~~W~~~  290 (468)
                      .+|-+++.....+.+.|||..++++..+.....+......+.  +.+   .+ -.|+..+.++.+.+||..++.|...
T Consensus        17 ~dg~~la~~~~~~~i~iw~~~~~~~~~~~~l~gH~~~V~~l~--fsp---~~-~~l~s~s~D~~i~vWd~~~~~~~~~   88 (371)
T d1k8kc_          17 KDRTQIAICPNNHEVHIYEKSGNKWVQVHELKEHNGQVTGVD--WAP---DS-NRIVTCGTDRNAYVWTLKGRTWKPT   88 (371)
T ss_dssp             TTSSEEEEECSSSEEEEEEEETTEEEEEEEEECCSSCEEEEE--EET---TT-TEEEEEETTSCEEEEEEETTEEEEE
T ss_pred             CCCCEEEEEeCCCEEEEEECCCCCEEEEEEecCCCCCEEEEE--ECC---CC-CEEEEEECCCeEEEEeecccccccc
Confidence            355444444444578889988887665544322222223333  331   12 2344445566799999998888744

>d2ad6a1 b.70.1.1 (A:1-571) Methanol dehydrogenase, heavy chain {Methylophilus methylotrophus, w3a1 [TaxId: 17]}

class: All beta proteins
fold: 8-bladed beta-propeller
superfamily: Quinoprotein alcohol dehydrogenase-like
family: Quinoprotein alcohol dehydrogenase-like
domain: Methanol dehydrogenase, heavy chain
species: Methylophilus methylotrophus, w3a1 [TaxId: 17]

Probab=80.71  E-value=6.1  Score=38.01  Aligned_cols=120  Identities=13%  Similarity=0.120  Sum_probs=68.9

Q ss_pred             cceEEECCEEEEEEcCCCeEEEEECC-C--CeEEEeecCCCC--------CCCCceEEEECCeEEEEEEEeeCCccEEEE
Q 012227          307 SQAVSVDGILYFMRSDPEGIVSYNMV-T--GVWKQFIIPTPL--------HLNDHTLAECGGRIMLVGLLTKNAATCVCI  375 (468)
Q Consensus       307 ~~~v~~~G~lY~~~~~~~~i~~fD~~-~--~~w~~i~~P~p~--------~~~~~~l~~~~G~L~lv~~~~~~~~~~i~V  375 (468)
                      ..+++++|++|+.......+.++|.. |  ..|+.- ...+.        ......++..+|+|++... .      -++
T Consensus        56 ~tP~v~~g~vyv~t~~~~~v~Alda~~tG~~~W~~~-~~~~~~~~~~~~~~~~~rg~a~~~~~i~~~~~-~------g~l  127 (571)
T d2ad6a1          56 GAPLVIGDMMYVHSAFPNNTYALNLNDPGKIVWQHK-PKQDASTKAVMCCDVVDRGLAYGAGQIVKKQA-N------GHL  127 (571)
T ss_dssp             SCCEEETTEEEEECSTTTCEEEEETTCTTSEEEEEC-CCCCGGGGGGCTTCSCCCCCEEETTEEEEECT-T------SEE
T ss_pred             cCCEEECCEEEEecCCCCeEEEEeCCCCCceEEEec-CCCCcccccccccCcCCCcceeeCCeEEEEeC-C------CcE
Confidence            45788999999987544679999973 4  468752 11111        1112456778999887532 1      167


Q ss_pred             EEEecCCC--CeEEEEeeChhhhhcccCcceEEEEEecCCEEEEEeeeC---CCCeEEEEECCCCcEEEc
Q 012227          376 WELQKMTL--LWKEVDRMPNIWCLDFYGKHVRMTCLGNKGLLMLSLRSR---QMNRLVTYNVMSREWLKV  440 (468)
Q Consensus       376 w~ld~~~~--~W~~v~~mp~~~~~~~~~~~~~~~~~~~~~~I~~~~~~~---~~~~l~~YD~~t~~w~~v  440 (468)
                      +.||..++  .|+.-  +...... .. ..... .+ .+|.|++.....   ..+.+..||+.|++..+.
T Consensus       128 ~alda~tG~~~w~~~--~~~~~~~-~~-~t~~p-~v-~~~~vivg~~~~~~~~~G~v~a~D~~TG~~~W~  191 (571)
T d2ad6a1         128 LALDAKTGKINWEVE--VCDPKVG-ST-LTQAP-FV-AKDTVLMGCSGAELGVRGAVNAFDLKTGELKWR  191 (571)
T ss_dssp             EEEETTTCCEEEEEE--CCCGGGT-CB-CCSCC-EE-ETTEEEEECBCGGGTCCCEEEEEETTTCCEEEE
T ss_pred             Eeeehhhhhhhcccc--ccccccc-cc-eeecC-eE-eCCeEEEeeccccccccCcEEEEECCCCcEEEE
Confidence            88887654  46542  2211110 00 00011 22 257777743321   246799999999976653