Citrus Sinensis ID: 012231

Local Sequence Feature Prediction

Prediction and (Method)Result
Residue Number Marker
Protein Sequence ?
Secondary Structure (PSIPRED) ?
Secondary Structure Prediction (SSPRO) ?
Coil and Loop (DISEMBL) ?
Flexible Loop (DISEMBL) ?
Low Complexity Region (SEG) ?
Disordered region (IsUnstruct) ?
Disordered Region (DISOPRED) ?
Disordered Region (DISEMBL) ?
Disordered Region (DISPRO) ?
Transmembrane Helix (TMHMM) ?
Transmembrane Helix (HMMTOP) ?
Transmembrane Helix (MEMSAT) ?
TM Helix, Signal Peptide (MEMSAT_SVM) ?
TM Helix, Signal Peptide (Phobius) ?
Signal Peptide (SignalP HMM Mode) ?
Signal Peptide (SignalP NN Mode) ?
Coiled Coils (COILS) ?
Positional Conservation ?
 
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350-------360-------370-------380-------390-------400-------410-------420-------430-------440-------450-------460-------47
MKKTNRRSRQTSAVDSSSSSLSQSPAVDDKEHYEKRVHELEQENDTLKREIEELRFKVASVSSTPDVAAQKLKEAHLEKMNALEGQVLELKKKLELQFQFSTQKPKGDEAAKRFQDEIQKLRVQKVQLQCKLKLEAVQFRLCKASLQKEIFQLMKENRRNEYELHLLSALNQRLKLVLQRKTKEAFEATKRLKELLESRKALTHRTAGSKTGNHSQFQSIEHELEVTVQVQKVSSEYERELEEMAGVINKLKLEAEMMKEENSRCLLEDDEFDPGVKDSEFSDLKEEVARLSNLISQMAVPKAEIIHNKSEVGQAQSSASVGSSTNLLETDTSESEFSGVVVAAMVKPASGVCCSCSKKSSCKTSKCECRVSGGSCGTSCGCAANKCTNRELGSVETEMTSSLTSEGAMLLQNSLIEKPLETKDDCCTRKQPLREIGNKLIKSISLKPGHRKKGQKTVSEHHNIDSPC
cccHHHHHHHHHcccccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccccccccccHHHHHHHHHHHHHHHHHHHHHHccHHHHHHHHHHHHHHHHHHHHccccccccccccccccccHHHHccccccccccccccccccccccccEEEccccccccccccccccccccccccccccccccccccHHHHHcccccccccccccccccccccccccccHHccccccccccccccccccEEEccccccc
cccccHHHHHHHHHHHcccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccccccccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccccccccccccccccccccccccccccccccccEEccccccccccccEEEEccccccccccccccccccccccccccccccHHHHHHHHHHHHHHHHccccccccccccccccHHHcccccccccccccccccccEEEEEEEEcccccc
mkktnrrsrqtsavdssssslsqspavddkehYEKRVHELEQENDTLKREIEELRFKVASVSSTPDVAAQKLKEAHLEKMNALEGQVLELKKKLELQFQfstqkpkgdeAAKRFQDEIQKLRVQKVQLQCKLKLEAVQFRLCKASLQKEIFQLMKENRRNEYELHLLSALNQRLKLVLQRKTKEAFEATKRLKELLESRKALthrtagsktgnhsqfqSIEHELEVTVQVQKVSSEYERELEEMAGVINKLKLEAEMMKEEnsrclleddefdpgvkdsefsDLKEEVARLSNLISqmavpkaeiihnksevgqaqssasvgsstnlletdtsesefsGVVVAAMVkpasgvccscskksscktskcecrvsggscgtscgcaankctnrelgsvETEMTSSLTSEGAMLLQNSLiekpletkddcctrkqpLREIGNKLIKsislkpghrkkgqktvsehhnidspc
mkktnrrsrqtsavdssssslsqspavddkehYEKRVHELEQENDTLKREIEELRFkvasvsstpDVAAQKLKEAHLEKMNALEGQVLELKKKLELQFQFstqkpkgdeAAKRFQDEIQKLRVQKVQLQCKLKLEAVQFRLCKASLQKEIFQLMKENRRNEYELHLLSALNQRLKLVLQRKTKEAFEATKRLKELLESRKalthrtagsktgnhsqfqsieHELEVTVQVQKVSSEYERELEEMAGVINKLKLEAEMMKEENSRCLLEDDEFDPGVKDSEFSDLKEEVARLSNLISQMAVPKAEIIHNKSEVGQAQSSASVGSSTNLLETDTSESEFSGVVVAAMVKPASGVCCScskksscktskcecrvsggscgtscgcaankCTNRELGSVETEMTSSLTSEGAMLLQNSLIEKPLETKDDCCTrkqplreignkliksislkpghrkkgqktvsehhnidspc
MKKTNRrsrqtsavdssssslsqspavdDKEHYEKRVHELEQENDTLKREIEELRFKVASVSSTPDVAAQKLKEAHLEKMNAlegqvlelkkklelqfqFSTQKPKGDEAAKRFQDEIQKLRVQKVQLQCKLKLEAVQFRLCKASLQKEIFQLMKENRRNEYELHLLSALNQRLKLVLQRKTKEAFEATKRLKELLESRKALTHRTAGSKTGNHSQFQSIEHELEVTVQVQKVSSEYERELEEMAGVINklkleaemmkeeNSRCLLEDDEFDPGVKDSEFSDLKEEVARLSNLISQMAVPKAEIIHNKSEvgqaqssasvgssTNLLETDTSESEFSGVVVAAMVKPASGVccscskksscktskcECRVsggscgtscgcAANKCTNRELGSVETEMTSSLTSEGAMLLQNSLIEKPLETKDDCCTRKQPLREIGNKLIKSISLKPGHRKKGQKTVSEHHNIDSPC
*********************************************************************************************************************IQKLRVQKVQLQCKLKLEAVQFRLCKASLQKEIFQLMKENRRNEYELHLLSALNQRLKLVLQRK************************************************************************************************************************************************************SGVVVAAMVKPASGVCCSCSKKSSCKTSKCECRVSGGSCGTSCGCAANKCTN*************************************C*****************************************
***************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************T**CECRVSGGSCGTSCGCA**************************************************************************VSEHHNID***
*********************************EKRVHELEQENDTLKREIEELRFKVASVSSTPDVAAQKLKEAHLEKMNALEGQVLELKKKLELQFQFST*********KRFQDEIQKLRVQKVQLQCKLKLEAVQFRLCKASLQKEIFQLMKENRRNEYELHLLSALNQRLKLVLQRKTKEAFEATKRLKELLESRKAL**************FQSIEHELEVTVQVQKVSSEYERELEEMAGVINKLKLEAEMMKEENSRCLLEDDEFDPGVKDSEFSDLKEEVARLSNLISQMAVPKAEIIHNKS***********************ESEFSGVVVAAMVKPASG*************************GTSCGCAANKCTNRELG***********SEGAMLLQNSLIEKPLETKDDCCTRKQPLREIGNKLIKSISL**********************
*********************SQSPAVDDKEHYEKRVHELEQENDTLKREIEELRFKVASVSSTPDVAAQKLKEAHLEKMNALEGQVLELKKKLELQFQFSTQKPKGDEAAKRFQDEIQKLRVQKVQLQCKLKLEAVQFRLCKASLQKEIFQLMKENRRNEYELHLLSALNQRLKLVLQRKTKEAFEATKRLKELLESRKALTHR******GNHSQFQSIEHELEVTVQVQKVSSEYERELEEMAGVINKLKLEAEMM*****************VKDSEFSDLKEEVARLSNLISQMAVPKAEIIHNKSEVG*************************************GVCCSCSKKSSCKTSKCECRVSGGSCGTSCGCAANKCTNR*******EMTSSLTS****LL*NSLIEKP*********RKQPLREIGNKLIKSIS*KPGHRKKGQKTVSEHHNI****
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
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SSSSSSSSSSSSSSiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
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MKKTNRRSRQTSAVDSSSSSLSQSPAVDDxxxxxxxxxxxxxxxxxxxxxxxxxxxxVASVSSTPDVAAQKLxxxxxxxxxxxxxxxxxxxxxLELQFQFSTQKPKGDEAxxxxxxxxxxxxxxxxxxxxxLKLEAVQFRLCKASLQKEIFQLMKENRRNEYELHLLSALNQRLKLVxxxxxxxxxxxxxxxxxxxxxRKALTHRTAGSKTGNHSQFQSIEHELEVTVQVQKVxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxDDEFDPGVKDSEFSDLKEEVARLSNLISQMAVPKAEIIHNKSEVGQAQSSASVGSSTNLLETDTSESEFSGVVVAAMVKPASGVCCSCSKKSSCKTSKCECRVSGGSCGTSCGCAANKCTNRELGSVETEMTSSLTSEGAMLLQNSLIEKPLETKDDCCTRKQPLREIGNKLIKSISLKPGHRKKGQKTVSEHHNIDSPC
no confident homologs detected

Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST ?

Original result of BLAST against SWISS-PROT Database

ID ?Alignment graph ?Length ? Definition ? RBH(Q2H) ? RBH(H2Q) ? Q cover ? H cover ? Identity ? E-value ?
Query468 2.2.26 [Sep-21-2011]
Q91784 1226 Chromosome-associated kin N/A no 0.448 0.171 0.333 3e-16
Q90640 1225 Chromosome-associated kin yes no 0.450 0.172 0.327 2e-15
P33174 1231 Chromosome-associated kin yes no 0.444 0.168 0.317 2e-15
O95239 1232 Chromosome-associated kin yes no 0.450 0.171 0.313 9e-15
Q2VIQ3 1234 Chromosome-associated kin no no 0.450 0.170 0.303 2e-13
Q7Z4S6 1674 Kinesin-like protein KIF2 no no 0.333 0.093 0.243 4e-05
Q9QXL2 1672 Kinesin-like protein KIF2 no no 0.354 0.099 0.234 5e-05
O75037 1637 Kinesin-like protein KIF2 no no 0.192 0.054 0.329 0.0006
Q9QXL1 1668 Kinesin-like protein KIF2 no no 0.192 0.053 0.329 0.0006
>sp|Q91784|KIF4_XENLA Chromosome-associated kinesin KIF4 OS=Xenopus laevis GN=kif4 PE=2 SV=1 Back     alignment and function desciption
 Score = 87.0 bits (214), Expect = 3e-16,   Method: Compositional matrix adjust.
 Identities = 71/213 (33%), Positives = 113/213 (53%), Gaps = 3/213 (1%)

Query: 33  YEKRVHELEQENDTLKREIEELRFKVASVSSTPDVAAQKLKEAHLEKMNALEGQVLELKK 92
           Y   +  LE E   L++E EEL   + S     + A  KL E   +++  LEGQ+ ELKK
Sbjct: 560 YLNNIKHLESEVGVLQKEKEELILALHSAKKDNNQA--KLSERRRKRLQELEGQMTELKK 617

Query: 93  KLELQFQFSTQKPKGDEAAKRFQDEIQKLRVQKVQLQCKLKLEAVQFRLCKASLQKEIFQ 152
           KL  Q +    +   ++   +   EIQ +++Q+VQL  ++K +A +FR  K    KE+ Q
Sbjct: 618 KLGEQSKLLKLRESTEKTVAKMNQEIQGMKMQRVQLMRQMKEDAEKFRTWKQQKTKEVIQ 677

Query: 153 LMKENRRNEYELHLLSALNQRLKLVLQRKTKEAFEATKRLKELLESRK-ALTHRTAGSKT 211
           L +++R+ +YEL  L    Q+   VL+RKT+EA  A KRLKE L+ +K A+  R      
Sbjct: 678 LKEKDRKRQYELLKLERDFQKQANVLRRKTEEAASANKRLKEALQRQKEAMEKRKDSQSK 737

Query: 212 GNHSQFQSIEHELEVTVQVQKVSSEYERELEEM 244
           G       +++ L   V+V   + E +R L ++
Sbjct: 738 GMEGAASRVKNWLANEVEVLVSTEEAQRHLNDL 770
Required for mitotic chromosomal positioning and bipolar spindle stabilization.
Xenopus laevis (taxid: 8355)
>sp|Q90640|KIF4_CHICK Chromosome-associated kinesin KIF4 OS=Gallus gallus GN=KIF4 PE=2 SV=1 Back     alignment and function description
>sp|P33174|KIF4_MOUSE Chromosome-associated kinesin KIF4 OS=Mus musculus GN=Kif4 PE=2 SV=3 Back     alignment and function description
>sp|O95239|KIF4A_HUMAN Chromosome-associated kinesin KIF4A OS=Homo sapiens GN=KIF4A PE=1 SV=3 Back     alignment and function description
>sp|Q2VIQ3|KIF4B_HUMAN Chromosome-associated kinesin KIF4B OS=Homo sapiens GN=KIF4B PE=2 SV=2 Back     alignment and function description
>sp|Q7Z4S6|KI21A_HUMAN Kinesin-like protein KIF21A OS=Homo sapiens GN=KIF21A PE=1 SV=2 Back     alignment and function description
>sp|Q9QXL2|KI21A_MOUSE Kinesin-like protein KIF21A OS=Mus musculus GN=Kif21a PE=1 SV=2 Back     alignment and function description
>sp|O75037|KI21B_HUMAN Kinesin-like protein KIF21B OS=Homo sapiens GN=KIF21B PE=1 SV=2 Back     alignment and function description
>sp|Q9QXL1|KI21B_MOUSE Kinesin-like protein KIF21B OS=Mus musculus GN=Kif21b PE=1 SV=2 Back     alignment and function description

Close Homologs in the Non-Redundant Database Detected by BLAST ?

Original result of BLAST against Nonredundant Database

GI ?Alignment Graph ?Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query468
224063325513 predicted protein [Populus trichocarpa] 0.995 0.908 0.486 7e-96
255545968511 conserved hypothetical protein [Ricinus 0.959 0.878 0.463 2e-95
357465247 757 Chromosome-associated kinesin KIF4 [Medi 0.961 0.594 0.444 1e-85
449470066413 PREDICTED: chromosome-associated kinesin 0.826 0.937 0.459 6e-82
356498850 1299 PREDICTED: chromosome-associated kinesin 0.572 0.206 0.557 2e-66
359492491 1261 PREDICTED: chromosome-associated kinesin 0.572 0.212 0.552 3e-66
302142065 1279 unnamed protein product [Vitis vinifera] 0.572 0.209 0.552 6e-66
356551769 1317 PREDICTED: chromosome-associated kinesin 0.572 0.203 0.554 5e-65
255545966 1290 Chromosome-associated kinesin KIF4A, put 0.568 0.206 0.530 1e-63
224063323 1290 predicted protein [Populus trichocarpa] 0.566 0.205 0.529 3e-63
>gi|224063325|ref|XP_002301097.1| predicted protein [Populus trichocarpa] gi|222842823|gb|EEE80370.1| predicted protein [Populus trichocarpa] Back     alignment and taxonomy information
 Score =  357 bits (916), Expect = 7e-96,   Method: Compositional matrix adjust.
 Identities = 234/481 (48%), Positives = 316/481 (65%), Gaps = 15/481 (3%)

Query: 1   MKKTNRRSRQTSAVDSSSSSLSQSPAVDDKEHYEKRVHELEQENDTLKREIEELRFKVAS 60
           MKK NRRS+++S  DSSS S  +S      +  +KRVH+LE+EN+ LKREIEEL+ K  +
Sbjct: 1   MKKGNRRSKRSSIADSSSPSKDESDQPQQNQDCDKRVHDLEKENEALKREIEELKEKDGA 60

Query: 61  VSSTP---DVAAQKLKEAHLEKMNALEGQVLELKKKLELQFQFSTQKPKGDEAAKRFQDE 117
             S+P     +  K K+  ++K+  LE QV+ELKKKL    Q S  K K  E+ +   DE
Sbjct: 61  KISSPISVGGSVGKRKQDDIQKLRNLEEQVMELKKKLNAHSQLSKLKQKNGESGR--PDE 118

Query: 118 IQKLRVQKVQLQCKLKLEAVQFRLCKASLQKEIFQLMKENRRNEYELHLLSALNQRLKLV 177
           IQ+L+ QKVQL CK+KL++VQFRL KASL++E+ Q+ KE RRN+YE+  L ALNQR KLV
Sbjct: 119 IQRLKAQKVQLLCKMKLDSVQFRLSKASLEREVLQMKKEQRRNQYEMRKLLALNQRQKLV 178

Query: 178 LQRKTKEAFEATKRLKELLESRKALTHRTAGSKTGNHSQFQSIEHELEVTVQVQKVSSEY 237
           LQRKT+EA  A KRLK LLESRKAL+ + +G K GN++  Q IE EL+V  +V+++ SEY
Sbjct: 179 LQRKTEEASMAAKRLKGLLESRKALSQKNSGVKAGNNAGSQGIELELKVAARVEEIRSEY 238

Query: 238 ERELEEMAGVINKLKLEAEMMKEEN----SRCLLEDDEFDPGVKDSEFSDLKEEVARLSN 293
           ER++EEM   + K + EAE ++ EN    S  L+ D E +  V+DSE  DLKEEV RLS+
Sbjct: 239 ERQMEEMDYEVRKFEEEAEKLRLENFSFLSSVLVHDKEVECTVRDSELRDLKEEVTRLSS 298

Query: 294 LISQMAVPKAEIIHNKSEVGQAQSSASVGSSTNLLETDTSESEFSGVVVAAMVKPASGVC 353
           L+S++ + KA++     +VG  QSS SVGSS  LL TDT ESE SG   A M K ASGVC
Sbjct: 299 LVSRLGMAKAQVNSRNPQVGVVQSSFSVGSSIELLGTDTYESEGSGGNTAVMGKSASGVC 358

Query: 354 CSCSKKSSCKTSKCECRVSGGSCGTSCGCAANKCTNRELG-----SVETEMTSSL-TSEG 407
           CSCSKKS CKT+KCECR +GGSCGT CGCAA KCTNR++      S ++E+   L  S  
Sbjct: 359 CSCSKKSLCKTTKCECRAAGGSCGTCCGCAALKCTNRKVSIKADDSQQSEVAQKLHVSSS 418

Query: 408 AMLLQNSLIEKPLETKDDCCTRKQPLREIGNKLIKSISLKPGHRKKGQKTVSEHHNIDSP 467
           +   ++ ++ +  +  +D    ++PL EIGN  + S  +KP  + + QK+  +       
Sbjct: 419 SETGKDVIMSQSTDLNNDLQPLRKPLHEIGNARMNSSPIKPVKKTRKQKSALQLDTTSQS 478

Query: 468 C 468
           C
Sbjct: 479 C 479

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Class:

Phylum: Streptophyta

Superkingdom: Eukaryota
>gi|255545968|ref|XP_002514044.1| conserved hypothetical protein [Ricinus communis] gi|223547130|gb|EEF48627.1| conserved hypothetical protein [Ricinus communis] Back     alignment and taxonomy information
>gi|357465247|ref|XP_003602905.1| Chromosome-associated kinesin KIF4 [Medicago truncatula] gi|355491953|gb|AES73156.1| Chromosome-associated kinesin KIF4 [Medicago truncatula] Back     alignment and taxonomy information
>gi|449470066|ref|XP_004152739.1| PREDICTED: chromosome-associated kinesin KIF4-like [Cucumis sativus] gi|449524627|ref|XP_004169323.1| PREDICTED: chromosome-associated kinesin KIF4-like [Cucumis sativus] Back     alignment and taxonomy information
>gi|356498850|ref|XP_003518261.1| PREDICTED: chromosome-associated kinesin KIF4-like [Glycine max] Back     alignment and taxonomy information
>gi|359492491|ref|XP_002283825.2| PREDICTED: chromosome-associated kinesin KIF4-like [Vitis vinifera] Back     alignment and taxonomy information
>gi|302142065|emb|CBI19268.3| unnamed protein product [Vitis vinifera] Back     alignment and taxonomy information
>gi|356551769|ref|XP_003544246.1| PREDICTED: chromosome-associated kinesin KIF4-like [Glycine max] Back     alignment and taxonomy information
>gi|255545966|ref|XP_002514043.1| Chromosome-associated kinesin KIF4A, putative [Ricinus communis] gi|223547129|gb|EEF48626.1| Chromosome-associated kinesin KIF4A, putative [Ricinus communis] Back     alignment and taxonomy information
>gi|224063323|ref|XP_002301096.1| predicted protein [Populus trichocarpa] gi|222842822|gb|EEE80369.1| predicted protein [Populus trichocarpa] Back     alignment and taxonomy information

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST ?

Original result of BLAST against Gene Ontology (AMIGO)

ID ? Alignment graph ? Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query468
TAIR|locus:2173537 1294 AT5G60930 [Arabidopsis thalian 0.587 0.212 0.453 4.3e-64
TAIR|locus:2145934439 AT5G33300 "AT5G33300" [Arabido 0.871 0.929 0.315 3.7e-48
TAIR|locus:21609121035 FRA1 "FRAGILE FIBER 1" [Arabid 0.446 0.201 0.433 5.3e-38
TAIR|locus:20748551051 KICP-02 [Arabidopsis thaliana 0.465 0.207 0.402 1.4e-35
UNIPROTKB|F1PDX5 1234 KIF4A "Uncharacterized protein 0.448 0.170 0.262 4e-13
UNIPROTKB|E9PSJ3 1231 Kif4 "Protein Kif4" [Rattus no 0.446 0.169 0.273 6.6e-13
MGI|MGI:108389 1231 Kif4 "kinesin family member 4" 0.442 0.168 0.271 8.7e-13
UNIPROTKB|K7GQ60 1210 KIF4A "Uncharacterized protein 0.446 0.172 0.268 1.1e-12
UNIPROTKB|F1RTL0 1234 KIF4A "Uncharacterized protein 0.446 0.169 0.268 1.1e-12
UNIPROTKB|O95239 1232 KIF4A "Chromosome-associated k 0.448 0.170 0.258 1.4e-12
TAIR|locus:2173537 AT5G60930 [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
 Score = 568 (205.0 bits), Expect = 4.3e-64, Sum P(2) = 4.3e-64
 Identities = 126/278 (45%), Positives = 170/278 (61%)

Query:    30 KEHYEKRVHELEQENDTLKREIEELRFKVASVSSTPDVAAQKLKEAHLEKMNAXXXXXXX 89
             K+HYEK+V++LEQE   L+REIE LR  +AS+ S P   AQKLKE +++K+N        
Sbjct:   584 KQHYEKKVYDLEQEKRALQREIEGLRHNLASIPSGPGDGAQKLKEEYVQKLNTLETQVSV 643

Query:    90 XXXXXXXXXXFSTQKPKGDEAAKRFQDEIQKLRVQKVQLQCKLKLEAVQFRLCKASLQKE 149
                          QK K D+AA + QDEI +++ QKVQLQ K+K E+ QFR  KAS +KE
Sbjct:   644 LKKKQDAQAQLMRQKQKSDDAAIKLQDEIHRIKSQKVQLQQKIKQESEQFRAWKASREKE 703

Query:   150 IFQLMKENRRNEYELHLLSALNQRLKLVLQRKTKEAFEATKRLKELLESRKALTHRTAGS 209
             + QL KE RRNEYE+H L ALNQ+ KLVLQRKT+EA + TKRLKELL++RKA +  T   
Sbjct:   704 VMQLKKEGRRNEYEMHKLMALNQKQKLVLQRKTEEASQVTKRLKELLDNRKASSRETLSG 763

Query:   210 KTGNHSQ--FQSIEHELEVTVQVQKVSSEYERELEEMAGVINXXXXXXXXXXXX-NSRCL 266
               G  +Q   Q+IEHE+EVTV+V +V SEYER+ EE A +               N++  
Sbjct:   764 ANGPGTQALMQAIEHEIEVTVRVHEVRSEYERQTEERARMAKEVARLREENELLKNAKIS 823

Query:   267 LEDDEFDPGVKDSEFSDLKEEVARLSNLISQMAVPKAE 304
             +  D   PG ++S    L+  +A  S+ +  MA   +E
Sbjct:   824 VHGDTMSPGARNSRIFALENMLATSSSTLVSMASQLSE 861
GO:0003777 "microtubule motor activity" evidence=IEA;ISS
GO:0005524 "ATP binding" evidence=IEA
GO:0005634 "nucleus" evidence=ISM
GO:0007018 "microtubule-based movement" evidence=IEA
GO:0009506 "plasmodesma" evidence=IDA
GO:0000911 "cytokinesis by cell plate formation" evidence=RCA
GO:0008283 "cell proliferation" evidence=RCA
TAIR|locus:2145934 AT5G33300 "AT5G33300" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2160912 FRA1 "FRAGILE FIBER 1" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2074855 KICP-02 [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
UNIPROTKB|F1PDX5 KIF4A "Uncharacterized protein" [Canis lupus familiaris (taxid:9615)] Back     alignment and assigned GO terms
UNIPROTKB|E9PSJ3 Kif4 "Protein Kif4" [Rattus norvegicus (taxid:10116)] Back     alignment and assigned GO terms
MGI|MGI:108389 Kif4 "kinesin family member 4" [Mus musculus (taxid:10090)] Back     alignment and assigned GO terms
UNIPROTKB|K7GQ60 KIF4A "Uncharacterized protein" [Sus scrofa (taxid:9823)] Back     alignment and assigned GO terms
UNIPROTKB|F1RTL0 KIF4A "Uncharacterized protein" [Sus scrofa (taxid:9823)] Back     alignment and assigned GO terms
UNIPROTKB|O95239 KIF4A "Chromosome-associated kinesin KIF4A" [Homo sapiens (taxid:9606)] Back     alignment and assigned GO terms

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries ?

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by Ezypred Server ?

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software ?

No EC number assignment, probably not an enzyme!

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING ?

Original result from the STRING server

Fail to connect to STRING server

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against CDD database part I

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query468
COG11961163 COG1196, Smc, Chromosome segregation ATPases [Cell 5e-07
TIGR021681179 TIGR02168, SMC_prok_B, chromosome segregation prot 9e-06
TIGR02169 1164 TIGR02169, SMC_prok_A, chromosome segregation prot 2e-04
COG1196 1163 COG1196, Smc, Chromosome segregation ATPases [Cell 6e-04
COG1196 1163 COG1196, Smc, Chromosome segregation ATPases [Cell 0.001
TIGR021681179 TIGR02168, SMC_prok_B, chromosome segregation prot 0.002
TIGR021681179 TIGR02168, SMC_prok_B, chromosome segregation prot 0.002
TIGR02168 1179 TIGR02168, SMC_prok_B, chromosome segregation prot 0.002
>gnl|CDD|224117 COG1196, Smc, Chromosome segregation ATPases [Cell division and chromosome partitioning] Back     alignment and domain information 
 Score = 52.0 bits (125), Expect = 5e-07
 Identities = 52/264 (19%), Positives = 114/264 (43%), Gaps = 17/264 (6%)

Query: 11  TSAVDSSSSSLSQSPAVDDKEH----YEKRVHELEQENDTLKREIEELRFKVASVSSTPD 66
           T    +  SSL+Q   + + E      E ++ +LE+E  +LK E+  L   +  +    +
Sbjct: 653 TGGSRNKRSSLAQKRELKELEEELAELEAQLEKLEEELKSLKNELRSLEDLLEELRRQLE 712

Query: 67  VA------AQKLKEAHLEKMNALEGQVLELKKKLELQFQFSTQKPKGDEAAKRFQDEIQK 120
                    ++   A  E++  L+ ++ EL+++LE   +   +  +  E  +  ++E++ 
Sbjct: 713 ELERQLEELKRELAALEEELEQLQSRLEELEEELE---ELEEELEELQERLEELEEELES 769

Query: 121 LRVQKVQLQCKLKLEAVQFRLCKASLQKEIFQLMKENRRNEYELHLLSALNQRLKLVLQR 180
           L     +L+ +++    +    + +LQ+E+ +L +E    E  L  L    + L+   +R
Sbjct: 770 LEEALAKLKEEIE----ELEEKRQALQEELEELEEELEEAERRLDALERELESLEQRRER 825

Query: 181 KTKEAFEATKRLKELLESRKALTHRTAGSKTGNHSQFQSIEHELEVTVQVQKVSSEYERE 240
             +E  E  + ++EL E    L       +       + +E       +++    E E E
Sbjct: 826 LEQEIEELEEEIEELEEKLDELEEELEELEKELEELKEELEELEAEKEELEDELKELEEE 885

Query: 241 LEEMAGVINKLKLEAEMMKEENSR 264
            EE+   + +L+ E   +KEE  +
Sbjct: 886 KEELEEELRELESELAELKEEIEK 909

Length = 1163
>gnl|CDD|233757 TIGR02168, SMC_prok_B, chromosome segregation protein SMC, common bacterial type Back     alignment and domain information
>gnl|CDD|233758 TIGR02169, SMC_prok_A, chromosome segregation protein SMC, primarily archaeal type Back     alignment and domain information
>gnl|CDD|224117 COG1196, Smc, Chromosome segregation ATPases [Cell division and chromosome partitioning] Back     alignment and domain information
>gnl|CDD|224117 COG1196, Smc, Chromosome segregation ATPases [Cell division and chromosome partitioning] Back     alignment and domain information
>gnl|CDD|233757 TIGR02168, SMC_prok_B, chromosome segregation protein SMC, common bacterial type Back     alignment and domain information
>gnl|CDD|233757 TIGR02168, SMC_prok_B, chromosome segregation protein SMC, common bacterial type Back     alignment and domain information
>gnl|CDD|233757 TIGR02168, SMC_prok_B, chromosome segregation protein SMC, common bacterial type Back     alignment and domain information

Conserved Domains Detected by HHsearch ?

Original result of HHsearch against CDD database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query 468
KOG0244913 consensus Kinesin-like protein [Cytoskeleton] 99.97
PF07888546 CALCOCO1: Calcium binding and coiled-coil domain ( 97.99
PF09726697 Macoilin: Transmembrane protein; InterPro: IPR0191 97.72
PRK03918 880 chromosome segregation protein; Provisional 97.17
TIGR006061311 rad50 rad50. This family is based on the phylogeno 96.84
PRK02224 880 chromosome segregation protein; Provisional 96.79
COG1196 1163 Smc Chromosome segregation ATPases [Cell division 96.75
PRK11637428 AmiB activator; Provisional 96.73
KOG4673 961 consensus Transcription factor TMF, TATA element m 96.64
TIGR02169 1164 SMC_prok_A chromosome segregation protein SMC, pri 96.62
KOG0964 1200 consensus Structural maintenance of chromosome pro 96.59
PF0363842 TCR: Tesmin/TSO1-like CXC domain, cysteine-rich do 96.33
TIGR00606 1311 rad50 rad50. This family is based on the phylogeno 96.3
TIGR02169 1164 SMC_prok_A chromosome segregation protein SMC, pri 96.22
KOG0161 1930 consensus Myosin class II heavy chain [Cytoskeleto 96.21
COG1579239 Zn-ribbon protein, possibly nucleic acid-binding [ 96.06
TIGR021681179 SMC_prok_B chromosome segregation protein SMC, com 95.87
KOG1029 1118 consensus Endocytic adaptor protein intersectin [S 95.84
KOG09331174 consensus Structural maintenance of chromosome pro 95.8
TIGR021681179 SMC_prok_B chromosome segregation protein SMC, com 95.69
PF12325120 TMF_TATA_bd: TATA element modulatory factor 1 TATA 95.61
PF00038312 Filament: Intermediate filament protein; InterPro: 95.53
PF00038312 Filament: Intermediate filament protein; InterPro: 95.28
PF05667594 DUF812: Protein of unknown function (DUF812); Inte 95.27
KOG0161 1930 consensus Myosin class II heavy chain [Cytoskeleto 95.2
PF12128 1201 DUF3584: Protein of unknown function (DUF3584); In 95.18
KOG0977546 consensus Nuclear envelope protein lamin, intermed 95.12
PF07888546 CALCOCO1: Calcium binding and coiled-coil domain ( 94.95
KOG0612 1317 consensus Rho-associated, coiled-coil containing p 94.07
PF09726697 Macoilin: Transmembrane protein; InterPro: IPR0191 94.04
PF10174 775 Cast: RIM-binding protein of the cytomatrix active 93.64
KOG0250 1074 consensus DNA repair protein RAD18 (SMC family pro 93.57
COG11961163 Smc Chromosome segregation ATPases [Cell division 93.38
KOG0977546 consensus Nuclear envelope protein lamin, intermed 93.31
PRK03918 880 chromosome segregation protein; Provisional 93.21
PRK11637428 AmiB activator; Provisional 93.1
PF05033103 Pre-SET: Pre-SET motif; InterPro: IPR007728 This r 93.07
PF10174775 Cast: RIM-binding protein of the cytomatrix active 92.87
PRK02224880 chromosome segregation protein; Provisional 92.62
PF14282106 FlxA: FlxA-like protein 92.02
PRK04863 1486 mukB cell division protein MukB; Provisional 91.93
KOG0250 1074 consensus DNA repair protein RAD18 (SMC family pro 91.28
KOG4674 1822 consensus Uncharacterized conserved coiled-coil pr 91.16
KOG4673 961 consensus Transcription factor TMF, TATA element m 91.07
KOG09961293 consensus Structural maintenance of chromosome pro 90.97
KOG09941758 consensus Extracellular matrix glycoprotein Lamini 90.83
KOG0612 1317 consensus Rho-associated, coiled-coil containing p 90.66
PRK09039343 hypothetical protein; Validated 90.46
COG4942420 Membrane-bound metallopeptidase [Cell division and 90.38
KOG4674 1822 consensus Uncharacterized conserved coiled-coil pr 90.19
PF08614194 ATG16: Autophagy protein 16 (ATG16); InterPro: IPR 90.11
PHA02562562 46 endonuclease subunit; Provisional 89.83
PF07106169 TBPIP: Tat binding protein 1(TBP-1)-interacting pr 89.74
PRK01156 895 chromosome segregation protein; Provisional 89.17
PF09755310 DUF2046: Uncharacterized conserved protein H4 (DUF 89.13
PF10481307 CENP-F_N: Cenp-F N-terminal domain; InterPro: IPR0 88.63
PF05667594 DUF812: Protein of unknown function (DUF812); Inte 88.57
PF05701522 WEMBL: Weak chloroplast movement under blue light; 88.53
COG3883265 Uncharacterized protein conserved in bacteria [Fun 88.23
PRK09039343 hypothetical protein; Validated 88.09
PF05010207 TACC: Transforming acidic coiled-coil-containing p 87.98
PF09730 717 BicD: Microtubule-associated protein Bicaudal-D; I 87.81
KOG4643 1195 consensus Uncharacterized coiled-coil protein [Fun 87.78
PF09730717 BicD: Microtubule-associated protein Bicaudal-D; I 87.74
KOG1853333 consensus LIS1-interacting protein NUDE [Cytoskele 87.34
PF12718143 Tropomyosin_1: Tropomyosin like; InterPro: IPR0005 86.86
PF04849306 HAP1_N: HAP1 N-terminal conserved region; InterPro 86.2
PF04156191 IncA: IncA protein; InterPro: IPR007285 Chlamydia 86.16
KOG4643 1195 consensus Uncharacterized coiled-coil protein [Fun 85.98
PF05010207 TACC: Transforming acidic coiled-coil-containing p 85.63
PF12128 1201 DUF3584: Protein of unknown function (DUF3584); In 85.59
PF15070 617 GOLGA2L5: Putative golgin subfamily A member 2-lik 85.13
KOG09941758 consensus Extracellular matrix glycoprotein Lamini 84.93
KOG4657246 consensus Uncharacterized conserved protein [Funct 84.89
KOG0018 1141 consensus Structural maintenance of chromosome pro 84.71
PHA02562562 46 endonuclease subunit; Provisional 84.6
PF05622 713 HOOK: HOOK protein; InterPro: IPR008636 This famil 84.2
PF00261237 Tropomyosin: Tropomyosin; InterPro: IPR000533 Trop 84.01
KOG0804493 consensus Cytoplasmic Zn-finger protein BRAP2 (BRC 83.42
KOG0971 1243 consensus Microtubule-associated protein dynactin 83.34
COG2433652 Uncharacterized conserved protein [Function unknow 83.0
KOG0980 980 consensus Actin-binding protein SLA2/Huntingtin-in 82.56
TIGR03007498 pepcterm_ChnLen polysaccharide chain length determ 82.39
PF07111739 HCR: Alpha helical coiled-coil rod protein (HCR); 82.24
PF08317325 Spc7: Spc7 kinetochore protein; InterPro: IPR01325 81.94
PF05483786 SCP-1: Synaptonemal complex protein 1 (SCP-1); Int 81.83
PF14988206 DUF4515: Domain of unknown function (DUF4515) 81.81
KOG2129552 consensus Uncharacterized conserved protein H4 [Fu 81.77
smart00787312 Spc7 Spc7 kinetochore protein. This domain is foun 81.32
PF09787511 Golgin_A5: Golgin subfamily A member 5; InterPro: 80.84
COG2433652 Uncharacterized conserved protein [Function unknow 80.73
KOG4807593 consensus F-actin binding protein, regulates actin 80.42
PF12718143 Tropomyosin_1: Tropomyosin like; InterPro: IPR0005 80.38
PF15290305 Syntaphilin: Golgi-localised syntaxin-1-binding cl 80.06
>KOG0244 consensus Kinesin-like protein [Cytoskeleton] Back     alignment and domain information 
Probab=99.97  E-value=2.2e-30  Score=284.91  Aligned_cols=312  Identities=25%  Similarity=0.239  Sum_probs=259.8

Q ss_pred             chHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcc
Q 012231           25 PAVDDKEHYEKRVHELEQENDTLKREIEELRFKVASVSSTPDVAAQKLKEAHLEKMNALEGQVLELKKKLELQFQFSTQK  104 (468)
Q Consensus        25 d~q~mk~qYEkKL~eLE~ei~~lq~ERDell~~L~~~ss~~~~~~~KLkeeyrkKL~eLE~ql~eLkkKq~e~~rLlK~k  104 (468)
                      ....+++|||.++..|+.++..++.|+++++.+|.....    .+.+|.++|.+||+.||.++..|++++.+|..|++.+
T Consensus       499 ~~~~~~~~~e~~~~~le~e~~~le~E~~~l~~el~~~~~----~~~kl~eer~qklk~le~q~s~lkk~l~~~~~l~~~~  574 (913)
T KOG0244|consen  499 EKSKAKEQYESDSGTLEAEKSPLESERSRLRNELNVFNR----LAAKLGEERVQKLKSLETQISLLKKKLSSQRKLIKPK  574 (913)
T ss_pred             hhhHHHHHHhhhhhhHHHHhcccccccHHHHHHHHhhhH----HHHHhhhHHHHHHHHHHHHHHHHHHhhHHHHHHhccc
Confidence            456789999999999999999999999999999987532    7899999999999999999999999999999999999


Q ss_pred             cchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHhHH
Q 012231          105 PKGDEAAKRFQDEIQKLRVQKVQLQCKLKLEAVQFRLCKASLQKEIFQLMKENRRNEYELHLLSALNQRLKLVLQRKTKE  184 (468)
Q Consensus       105 ~ksE~kik~L~~EIq~MK~qKVqL~KKMKEEsekfR~~k~~reKEI~QLKKe~RK~q~ei~kLe~~~~kQ~~VLKRKtEE  184 (468)
                      .+++..+.+|..||..||.|||+|+++|++|+++|+.|++.++||++||+++.|++++++.+|+..+.+|..||+|||+|
T Consensus       575 ~~~~~~~~kl~~ei~~~k~~kv~l~~~~~~d~ekfr~~K~~~~Ke~~qlk~~~rk~~~~~~~~~~l~~~q~~vl~~kt~e  654 (913)
T KOG0244|consen  575 PKSEGIRAKLLQEIHIAKGQKVQLLRVMKEDAEKFRQWKDRTEKEWNQLKGQERKSEGEHPKLEVLVKKQNYVLQRKTEE  654 (913)
T ss_pred             hhhHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHhccchhhccchhHHHHHHHHHHHHHHHHHHH
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHHHHHHHHhh-hcccCCCCCCc--hhHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHH---
Q 012231          185 AFEATKRLKELLESRKALT-HRTAGSKTGNH--SQFQSIEHELEVTVQVQKVSSEYERELEE---MAGVINKLKLEA---  255 (468)
Q Consensus       185 aaAa~KRLK~lL~~rk~~~-~R~~~~~~~~~--~~ikWLe~ElEv~v~~~Ea~~~LE~llE~---L~~E~~~Lk~e~---  255 (468)
                      |+++++||++++..|+..+ ++..-..+|+.  .-|.|+++||++++.+++++.+|+.++++   ++.++..|+++.   
T Consensus       655 as~~~krlk~a~~~r~~~~s~~~~~~~~~~~~~~~~~~~~~e~ei~~~~~~~~~~l~~~~~~ra~~~~d~~~~r~~~~k~  734 (913)
T KOG0244|consen  655 ASAANKRLKEALCIRALTSSGQVTLGDNGASTSRTVAWPSNEIEINQIALNPRGTLLYAAEERAVRMWDLKRLRSEGKKL  734 (913)
T ss_pred             HHHHHHHHHHHHHHHhhcCCCccchhhcCchhHHHHHHhccchHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            9999999999999999753 33221122222  34779999999999999999999999999   666666665433   


Q ss_pred             --------Hhchhc--------------cc----------------------------ccccccccCCCCCccchhhhhH
Q 012231          256 --------EMMKEE--------------NS----------------------------RCLLEDDEFDPGVKDSEFSDLK  285 (468)
Q Consensus       256 --------e~l~~~--------------~~----------------------------~~~l~dke~~c~~kd~e~~elk  285 (468)
                              ++....              +.                            ++..+..+..|++++--+.+|.
T Consensus       735 l~~L~~~~~~~~~~i~s~~~~i~~a~~d~~~~~~w~~v~t~~~ak~~~~~~~~~~~~~r~~~~~~~~~~re~~~~~~~l~  814 (913)
T KOG0244|consen  735 LGSLEPVMELTSDQISSMQDLIITASKDERIKMRWEAVGTLSEAKNFEPYLYDGIVALRIQGDNLFSGSREKGIKKWDLT  814 (913)
T ss_pred             HhhhHHHHHHHHHHHHhHHhhhcccccchhHHHHHhcccccccchhhhHHHHHHHHHHHHHHHHHhhhhhhhhhhHHHHH
Confidence                    221100              00                            0333455577889999999999


Q ss_pred             HHHHHHHHHHHhhcchhHHHhhhhhhhhhc--ccc--------------cccCCCcccccCCCcccccccc
Q 012231          286 EEVARLSNLISQMAVPKAEIIHNKSEVGQA--QSS--------------ASVGSSTNLLETDTSESEFSGV  340 (468)
Q Consensus       286 E~~~~l~~~l~~~e~~k~e~~~~~k~~~~~--~~s--------------~~~~~~~~~~d~d~s~~e~s~~  340 (468)
                      ++++.....|+-.+.+..+..++.+...+.  -+.              ....+.+...++|+.++...++
T Consensus       815 ~kl~~~q~~~rk~e~~~~~~v~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~st~~~~~~~~  885 (913)
T KOG0244|consen  815 QKLLDEQVNLRKDEVQALGVVPEHPVLLSGCKGGILKVWQMDTFMPKEEKGHDPINAICLNSTHIFTAADD  885 (913)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHhhchhhhhccCCcchhhccccchhhHHHH
Confidence            999999999999999999888887776551  100              0111556666777777665543

>PF07888 CALCOCO1: Calcium binding and coiled-coil domain (CALCOCO1) like; InterPro: IPR012852 Proteins found in this family are similar to the coiled-coil transcriptional coactivator protein expressed by Mus musculus (CoCoA, Q8CGU1 from SWISSPROT) Back     alignment and domain information
>PF09726 Macoilin: Transmembrane protein; InterPro: IPR019130 This entry represents the multi-pass transmembrane protein Macoilin, which is highly conserved in eukaryotes Back     alignment and domain information
>PRK03918 chromosome segregation protein; Provisional Back     alignment and domain information
>TIGR00606 rad50 rad50 Back     alignment and domain information
>PRK02224 chromosome segregation protein; Provisional Back     alignment and domain information
>COG1196 Smc Chromosome segregation ATPases [Cell division and chromosome partitioning] Back     alignment and domain information
>PRK11637 AmiB activator; Provisional Back     alignment and domain information
>KOG4673 consensus Transcription factor TMF, TATA element modulatory factor [Transcription] Back     alignment and domain information
>TIGR02169 SMC_prok_A chromosome segregation protein SMC, primarily archaeal type Back     alignment and domain information
>KOG0964 consensus Structural maintenance of chromosome protein 3 (sister chromatid cohesion complex Cohesin, subunit SMC3) [Cell cycle control, cell division, chromosome partitioning] Back     alignment and domain information
>PF03638 TCR: Tesmin/TSO1-like CXC domain, cysteine-rich domain; InterPro: IPR005172 This entry includes proteins that have two copies of a cysteine rich motif as follows: C-X-C-X4-C-X3-YC-X-C-X6-C-X3-C-X-C-X2-C Back     alignment and domain information
>TIGR00606 rad50 rad50 Back     alignment and domain information
>TIGR02169 SMC_prok_A chromosome segregation protein SMC, primarily archaeal type Back     alignment and domain information
>KOG0161 consensus Myosin class II heavy chain [Cytoskeleton] Back     alignment and domain information
>COG1579 Zn-ribbon protein, possibly nucleic acid-binding [General function prediction only] Back     alignment and domain information
>TIGR02168 SMC_prok_B chromosome segregation protein SMC, common bacterial type Back     alignment and domain information
>KOG1029 consensus Endocytic adaptor protein intersectin [Signal transduction mechanisms; Intracellular trafficking, secretion, and vesicular transport] Back     alignment and domain information
>KOG0933 consensus Structural maintenance of chromosome protein 2 (chromosome condensation complex Condensin, subunit E) [Chromatin structure and dynamics; Cell cycle control, cell division, chromosome partitioning] Back     alignment and domain information
>TIGR02168 SMC_prok_B chromosome segregation protein SMC, common bacterial type Back     alignment and domain information
>PF12325 TMF_TATA_bd: TATA element modulatory factor 1 TATA binding; InterPro: IPR022091 This is the C-terminal conserved coiled coil region of a family of TATA element modulatory factor 1 proteins conserved in eukaryotes [] Back     alignment and domain information
>PF00038 Filament: Intermediate filament protein; InterPro: IPR016044 Intermediate filaments (IF) [, , ] are proteins which are primordial components of the cytoskeleton and the nuclear envelope Back     alignment and domain information
>PF00038 Filament: Intermediate filament protein; InterPro: IPR016044 Intermediate filaments (IF) [, , ] are proteins which are primordial components of the cytoskeleton and the nuclear envelope Back     alignment and domain information
>PF05667 DUF812: Protein of unknown function (DUF812); InterPro: IPR008530 This family consists of several eukaryotic proteins of unknown function Back     alignment and domain information
>KOG0161 consensus Myosin class II heavy chain [Cytoskeleton] Back     alignment and domain information
>PF12128 DUF3584: Protein of unknown function (DUF3584); InterPro: IPR021979 This family consist of uncharacterised bacterial proteins Back     alignment and domain information
>KOG0977 consensus Nuclear envelope protein lamin, intermediate filament superfamily [Cell cycle control, cell division, chromosome partitioning; Nuclear structure] Back     alignment and domain information
>PF07888 CALCOCO1: Calcium binding and coiled-coil domain (CALCOCO1) like; InterPro: IPR012852 Proteins found in this family are similar to the coiled-coil transcriptional coactivator protein expressed by Mus musculus (CoCoA, Q8CGU1 from SWISSPROT) Back     alignment and domain information
>KOG0612 consensus Rho-associated, coiled-coil containing protein kinase [Signal transduction mechanisms] Back     alignment and domain information
>PF09726 Macoilin: Transmembrane protein; InterPro: IPR019130 This entry represents the multi-pass transmembrane protein Macoilin, which is highly conserved in eukaryotes Back     alignment and domain information
>PF10174 Cast: RIM-binding protein of the cytomatrix active zone; InterPro: IPR019323 This entry represents a family of proteins that form part of the CAZ (cytomatrix at the active zone) complex which is involved in determining the site of synaptic vesicle fusion [] Back     alignment and domain information
>KOG0250 consensus DNA repair protein RAD18 (SMC family protein) [Replication, recombination and repair] Back     alignment and domain information
>COG1196 Smc Chromosome segregation ATPases [Cell division and chromosome partitioning] Back     alignment and domain information
>KOG0977 consensus Nuclear envelope protein lamin, intermediate filament superfamily [Cell cycle control, cell division, chromosome partitioning; Nuclear structure] Back     alignment and domain information
>PRK03918 chromosome segregation protein; Provisional Back     alignment and domain information
>PRK11637 AmiB activator; Provisional Back     alignment and domain information
>PF05033 Pre-SET: Pre-SET motif; InterPro: IPR007728 This region is found in a number of histone lysine methyltransferases (HMTase), N-terminal to the SET domain; it is generally described as the pre-SET domain Back     alignment and domain information
>PF10174 Cast: RIM-binding protein of the cytomatrix active zone; InterPro: IPR019323 This entry represents a family of proteins that form part of the CAZ (cytomatrix at the active zone) complex which is involved in determining the site of synaptic vesicle fusion [] Back     alignment and domain information
>PRK02224 chromosome segregation protein; Provisional Back     alignment and domain information
>PF14282 FlxA: FlxA-like protein Back     alignment and domain information
>PRK04863 mukB cell division protein MukB; Provisional Back     alignment and domain information
>KOG0250 consensus DNA repair protein RAD18 (SMC family protein) [Replication, recombination and repair] Back     alignment and domain information
>KOG4674 consensus Uncharacterized conserved coiled-coil protein [Function unknown] Back     alignment and domain information
>KOG4673 consensus Transcription factor TMF, TATA element modulatory factor [Transcription] Back     alignment and domain information
>KOG0996 consensus Structural maintenance of chromosome protein 4 (chromosome condensation complex Condensin, subunit C) [Chromatin structure and dynamics; Cell cycle control, cell division, chromosome partitioning] Back     alignment and domain information
>KOG0994 consensus Extracellular matrix glycoprotein Laminin subunit beta [Extracellular structures] Back     alignment and domain information
>KOG0612 consensus Rho-associated, coiled-coil containing protein kinase [Signal transduction mechanisms] Back     alignment and domain information
>PRK09039 hypothetical protein; Validated Back     alignment and domain information
>COG4942 Membrane-bound metallopeptidase [Cell division and chromosome partitioning] Back     alignment and domain information
>KOG4674 consensus Uncharacterized conserved coiled-coil protein [Function unknown] Back     alignment and domain information
>PF08614 ATG16: Autophagy protein 16 (ATG16); InterPro: IPR013923 Macroautophagy is a bulk degradation process induced by starvation in eukaryotic cells Back     alignment and domain information
>PHA02562 46 endonuclease subunit; Provisional Back     alignment and domain information
>PF07106 TBPIP: Tat binding protein 1(TBP-1)-interacting protein (TBPIP); InterPro: IPR010776 This family consists of several eukaryotic TBP-1 interacting protein (TBPIP) sequences Back     alignment and domain information
>PRK01156 chromosome segregation protein; Provisional Back     alignment and domain information
>PF09755 DUF2046: Uncharacterized conserved protein H4 (DUF2046); InterPro: IPR019152 This is the conserved N-terminal 350 residues of a family of proteins of unknown function possibly containing a coiled-coil domain Back     alignment and domain information
>PF10481 CENP-F_N: Cenp-F N-terminal domain; InterPro: IPR018463 Mitosin or centromere-associated protein-F (Cenp-F) is found bound across the centromere as one of the proteins of the outer layer of the kinetochore [] Back     alignment and domain information
>PF05667 DUF812: Protein of unknown function (DUF812); InterPro: IPR008530 This family consists of several eukaryotic proteins of unknown function Back     alignment and domain information
>PF05701 WEMBL: Weak chloroplast movement under blue light; InterPro: IPR008545 This family consists of several plant proteins of unknown function Back     alignment and domain information
>COG3883 Uncharacterized protein conserved in bacteria [Function unknown] Back     alignment and domain information
>PRK09039 hypothetical protein; Validated Back     alignment and domain information
>PF05010 TACC: Transforming acidic coiled-coil-containing protein (TACC); InterPro: IPR007707 This family contains the proteins TACC 1, 2 and 3, found concentrated in the centrosomes of eukaryotes which may play a conserved role in organising centrosomal microtubules Back     alignment and domain information
>PF09730 BicD: Microtubule-associated protein Bicaudal-D; InterPro: IPR018477 BicD proteins consist of three coiled-coiled domains and are involved in dynein-mediated minus end-directed transport from the Golgi apparatus to the endoplasmic reticulum (ER) [] Back     alignment and domain information
>KOG4643 consensus Uncharacterized coiled-coil protein [Function unknown] Back     alignment and domain information
>PF09730 BicD: Microtubule-associated protein Bicaudal-D; InterPro: IPR018477 BicD proteins consist of three coiled-coiled domains and are involved in dynein-mediated minus end-directed transport from the Golgi apparatus to the endoplasmic reticulum (ER) [] Back     alignment and domain information
>KOG1853 consensus LIS1-interacting protein NUDE [Cytoskeleton] Back     alignment and domain information
>PF12718 Tropomyosin_1: Tropomyosin like; InterPro: IPR000533 Tropomyosins [], are a family of closely related proteins present in muscle and non-muscle cells Back     alignment and domain information
>PF04849 HAP1_N: HAP1 N-terminal conserved region; InterPro: IPR006933 This family is defined by an N-terminal conserved region found in several huntingtin-associated protein 1 (HAP1) homologues Back     alignment and domain information
>PF04156 IncA: IncA protein; InterPro: IPR007285 Chlamydia trachomatis is an obligate intracellular bacterium that develops within a parasitophorous vacuole termed an inclusion Back     alignment and domain information
>KOG4643 consensus Uncharacterized coiled-coil protein [Function unknown] Back     alignment and domain information
>PF05010 TACC: Transforming acidic coiled-coil-containing protein (TACC); InterPro: IPR007707 This family contains the proteins TACC 1, 2 and 3, found concentrated in the centrosomes of eukaryotes which may play a conserved role in organising centrosomal microtubules Back     alignment and domain information
>PF12128 DUF3584: Protein of unknown function (DUF3584); InterPro: IPR021979 This family consist of uncharacterised bacterial proteins Back     alignment and domain information
>PF15070 GOLGA2L5: Putative golgin subfamily A member 2-like protein 5 Back     alignment and domain information
>KOG0994 consensus Extracellular matrix glycoprotein Laminin subunit beta [Extracellular structures] Back     alignment and domain information
>KOG4657 consensus Uncharacterized conserved protein [Function unknown] Back     alignment and domain information
>KOG0018 consensus Structural maintenance of chromosome protein 1 (sister chromatid cohesion complex Cohesin, subunit SMC1) [Cell cycle control, cell division, chromosome partitioning] Back     alignment and domain information
>PHA02562 46 endonuclease subunit; Provisional Back     alignment and domain information
>PF05622 HOOK: HOOK protein; InterPro: IPR008636 This family consists of several HOOK1, 2 and 3 proteins from different eukaryotic organisms Back     alignment and domain information
>PF00261 Tropomyosin: Tropomyosin; InterPro: IPR000533 Tropomyosins [], are a family of closely related proteins present in muscle and non-muscle cells Back     alignment and domain information
>KOG0804 consensus Cytoplasmic Zn-finger protein BRAP2 (BRCA1 associated protein) [General function prediction only] Back     alignment and domain information
>KOG0971 consensus Microtubule-associated protein dynactin DCTN1/Glued [Cell cycle control, cell division, chromosome partitioning; Cytoskeleton] Back     alignment and domain information
>COG2433 Uncharacterized conserved protein [Function unknown] Back     alignment and domain information
>KOG0980 consensus Actin-binding protein SLA2/Huntingtin-interacting protein Hip1 [Cytoskeleton] Back     alignment and domain information
>TIGR03007 pepcterm_ChnLen polysaccharide chain length determinant protein, PEP-CTERM locus subfamily Back     alignment and domain information
>PF07111 HCR: Alpha helical coiled-coil rod protein (HCR); InterPro: IPR009800 This family consists of several mammalian alpha helical coiled-coil rod HCR proteins Back     alignment and domain information
>PF08317 Spc7: Spc7 kinetochore protein; InterPro: IPR013253 This entry consists of cell division proteins which are required for kinetochore-spindle association [] Back     alignment and domain information
>PF05483 SCP-1: Synaptonemal complex protein 1 (SCP-1); InterPro: IPR008827 Synaptonemal complex protein 1 (SCP-1) is the major component of the transverse filaments of the synaptonemal complex Back     alignment and domain information
>PF14988 DUF4515: Domain of unknown function (DUF4515) Back     alignment and domain information
>KOG2129 consensus Uncharacterized conserved protein H4 [Function unknown] Back     alignment and domain information
>smart00787 Spc7 Spc7 kinetochore protein Back     alignment and domain information
>PF09787 Golgin_A5: Golgin subfamily A member 5; InterPro: IPR019177 This entry represents a family of proteins involved in maintaining Golgi structure Back     alignment and domain information
>COG2433 Uncharacterized conserved protein [Function unknown] Back     alignment and domain information
>KOG4807 consensus F-actin binding protein, regulates actin cytoskeletal organization [Cytoskeleton] Back     alignment and domain information
>PF12718 Tropomyosin_1: Tropomyosin like; InterPro: IPR000533 Tropomyosins [], are a family of closely related proteins present in muscle and non-muscle cells Back     alignment and domain information
>PF15290 Syntaphilin: Golgi-localised syntaxin-1-binding clamp Back     alignment and domain information

Homologous Structure Templates

Structure Templates Detected by BLAST ?

Original result of BLAST against Protein Data Bank

No homologous structure with e-value below 0.005

Structure Templates Detected by RPS-BLAST ?

Original result of RPS-BLAST against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query468
1i84_S1184 Smooth muscle myosin heavy chain; muscle protein, 7e-10
1i84_S1184 Smooth muscle myosin heavy chain; muscle protein, 8e-06
1i84_S1184 Smooth muscle myosin heavy chain; muscle protein, 4e-04
1vt4_I 1221 APAF-1 related killer DARK; drosophila apoptosome, 4e-08
1vt4_I 1221 APAF-1 related killer DARK; drosophila apoptosome, 3e-05
2dfs_A1080 Myosin-5A; myosin-V, inhibited state, cryoelectron 7e-05
2dfs_A1080 Myosin-5A; myosin-V, inhibited state, cryoelectron 5e-04
>1i84_S Smooth muscle myosin heavy chain; muscle protein, myosin subfragment 2, heavy meromyosin, essential light chain, motor protein; HET: MLY; 20.00A {Gallus gallus} SCOP: i.15.1.1 PDB: 3j04_A 3dtp_B 3dtp_A Length = 1184 Back     alignment and structure
 Score = 60.6 bits (147), Expect = 7e-10
 Identities = 45/248 (18%), Positives = 94/248 (37%), Gaps = 9/248 (3%)

Query: 28   DDKEHYEKRVHELEQENDTLKREIEELRFKVASVSSTPDVAAQKLKEAHLEKMNALEGQV 87
            +  +  +    +++Q+   L+ ++EE       +      A  K+K+   + +  +E Q 
Sbjct: 941  ERSQQLQAEKKKMQQQMLDLEEQLEEEEAARQKLQLEKVTADGKIKKME-DDILIMEDQN 999

Query: 88   LEL---KKKLELQF-QFSTQKPKGDEAAKRFQDEIQKLRVQKVQLQCKLKLEAVQFRLCK 143
             +L   +K LE +    +T   + +E AK       K      +L+ +LK E       +
Sbjct: 1000 NKLTKERKLLEERVSDLTTNLAEEEEKAKNLTKLKNKHESMISELEVRLKKE----EKSR 1055

Query: 144  ASLQKEIFQLMKENRRNEYELHLLSALNQRLKLVLQRKTKEAFEATKRLKELLESRKALT 203
              L+K   +L  E+     ++  L A    LK  L +K +E   A  RL++    +    
Sbjct: 1056 QELEKIKRKLEGESSDLHEQIAELQAQIAELKAQLAKKEEELQAALARLEDETSQKNNAL 1115

Query: 204  HRTAGSKTGNHSQFQSIEHELEVTVQVQKVSSEYERELEEMAGVINKLKLEAEMMKEENS 263
             +    ++      + +E E     + +K   +   ELE +   +          +E   
Sbjct: 1116 KKIRELESHISDLQEDLESEKAARNKAEKQKRDLSEELEALKTELEDTLDTTATQQELRG 1175

Query: 264  RCLLEDDE 271
                +DD+
Sbjct: 1176 SDYKDDDD 1183
>1i84_S Smooth muscle myosin heavy chain; muscle protein, myosin subfragment 2, heavy meromyosin, essential light chain, motor protein; HET: MLY; 20.00A {Gallus gallus} SCOP: i.15.1.1 PDB: 3j04_A 3dtp_B 3dtp_A Length = 1184 Back     alignment and structure
>1i84_S Smooth muscle myosin heavy chain; muscle protein, myosin subfragment 2, heavy meromyosin, essential light chain, motor protein; HET: MLY; 20.00A {Gallus gallus} SCOP: i.15.1.1 PDB: 3j04_A 3dtp_B 3dtp_A Length = 1184 Back     alignment and structure
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 Back     alignment and structure
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 Back     alignment and structure
>2dfs_A Myosin-5A; myosin-V, inhibited state, cryoelectron tomograp contractIle protein-transport protein complex; 24.00A {Gallus gallus} Length = 1080 Back     alignment and structure
>2dfs_A Myosin-5A; myosin-V, inhibited state, cryoelectron tomograp contractIle protein-transport protein complex; 24.00A {Gallus gallus} Length = 1080 Back     alignment and structure

Structure Templates Detected by HHsearch ?

Original result of HHsearch against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query468
2v71_A189 Nuclear distribution protein NUDE-like 1; developm 97.23
1i84_S1184 Smooth muscle myosin heavy chain; muscle protein, 95.77
2dfs_A1080 Myosin-5A; myosin-V, inhibited state, cryoelectron 95.75
3na7_A256 HP0958; flagellar biogenesis, flagellum export, C4 95.67
2v71_A189 Nuclear distribution protein NUDE-like 1; developm 94.91
3oja_B597 Anopheles plasmodium-responsive leucine-rich REPE 93.61
1c1g_A284 Tropomyosin; contractIle protein; 7.00A {Sus scrof 91.63
3oja_B597 Anopheles plasmodium-responsive leucine-rich REPE 91.09
3ol1_A119 Vimentin; structural genomics, PSI-2, protein stru 90.87
2dfs_A1080 Myosin-5A; myosin-V, inhibited state, cryoelectron 87.7
1ml9_A302 Histone H3 methyltransferase DIM-5; adoMet-depende 86.16
1mvh_A299 Cryptic LOCI regulator 4; lysine methyltransferase 85.76
3na7_A256 HP0958; flagellar biogenesis, flagellum export, C4 85.34
3hna_A287 Histone-lysine N-methyltransferase, H3 lysine-9 sp 84.35
3s4r_A93 Vimentin; alpha-helix, cytoskeleton, intermediate 84.11
1c1g_A284 Tropomyosin; contractIle protein; 7.00A {Sus scrof 83.27
1t2y_A26 Metallothionein, MT; protein fold, no secondary st 82.52
3tnu_B129 Keratin, type II cytoskeletal 5; coiled-coil, stru 81.19
3oja_A487 Leucine-rich immune molecule 1; coiled-coil, helix 81.16
3bo5_A290 Histone-lysine N-methyltransferase setmar; SET dom 80.85
3tnu_A131 Keratin, type I cytoskeletal 14; coiled-coil, stru 80.34
>2v71_A Nuclear distribution protein NUDE-like 1; developmental protein, nuclear protein, neurogenesis, cytosk LIS1 binding, differentiation; 2.24A {Rattus norvegicus} Back     alignment and structure
Probab=97.23  E-value=0.057  Score=50.89  Aligned_cols=171  Identities=15%  Similarity=0.165  Sum_probs=90.7

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccchH
Q 012231           29 DKEHYEKRVHELEQENDTLKREIEELRFKVASVSSTPDVAAQKLKEAHLEKMNALEGQVLELKKKLELQFQFSTQKPKGD  108 (468)
Q Consensus        29 mk~qYEkKL~eLE~ei~~lq~ERDell~~L~~~ss~~~~~~~KLkeeyrkKL~eLE~ql~eLkkKq~e~~rLlK~k~ksE  108 (468)
                      --.+|-....++..++..++.|.++....           .+.|..+.+.-|..+++++.+|+.+               
T Consensus        11 e~~ywk~~~~~~~q~~~~le~El~EFqes-----------SrELE~ELE~eL~~~Ek~~~~L~~~---------------   64 (189)
T 2v71_A           11 ETAYWKELSMKYKQSFQEARDELVEFQEG-----------SRELEAELEAQLVQAEQRNRDLQAD---------------   64 (189)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHH-----------HHHHHHHHHHHHHHHHHHHHHHHHH---------------
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHH-----------HHHHHHHHHHHHHHHHHHHHHHHHH---------------
Confidence            34577788888888888888888887643           3467777777777777777777643               


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHhHHHHHH
Q 012231          109 EAAKRFQDEIQKLRVQKVQLQCKLKLEAVQFRLCKASLQKEIFQLMKENRRNEYELHLLSALNQRLKLVLQRKTKEAFEA  188 (468)
Q Consensus       109 ~kik~L~~EIq~MK~qKVqL~KKMKEEsekfR~~k~~reKEI~QLKKe~RK~q~ei~kLe~~~~kQ~~VLKRKtEEaaAa  188 (468)
                        +..|..|+...|.       +...-...+-..-....+||.+|+...+.....|+.|+..|.-=+.-.+-.+.=+.-+
T Consensus        65 --~~~L~~E~e~~k~-------K~~~~~~e~~~~~~~Lq~el~~l~~~~~~l~~~ireLEq~NDdlEr~~R~~~~SleD~  135 (189)
T 2v71_A           65 --NQRLKYEVEALKE-------KLEHQYAQSYKQVSVLEDDLSQTRAIKEQLHKYVRELEQANDDLERAKRATIMSLEDF  135 (189)
T ss_dssp             --HHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             --HHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHhhHHHH
Confidence              4455566665553       3333333333344555667777777777777777777766654444333333333333


Q ss_pred             HHHHHHHHHHHHHhhhcccCCCCCCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhch
Q 012231          189 TKRLKELLESRKALTHRTAGSKTGNHSQFQSIEHELEVTVQVQKVSSEYERELEEMAGVINKLKLEAEMMK  259 (468)
Q Consensus       189 ~KRLK~lL~~rk~~~~R~~~~~~~~~~~ikWLe~ElEv~v~~~Ea~~~LE~llE~L~~E~~~Lk~e~e~l~  259 (468)
                      ..++-.+++                  ..-||+.||+-       +..|...+++|..|+..|+.++..+.
T Consensus       136 e~kln~aiE------------------r~alLE~El~E-------Ke~l~~~~QRLkdE~rDLk~El~v~~  181 (189)
T 2v71_A          136 EQRLNQAIE------------------RNAFLESELDE-------KESLLVSVQRLKDEARDLRQELAVRE  181 (189)
T ss_dssp             HHHHHHHHH------------------HHHHHHHHHHH-------HHHHHCCC------------------
T ss_pred             HHHHHHHHH------------------HHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence            333222222                  23378888772       44566666667777777777776554
>1i84_S Smooth muscle myosin heavy chain; muscle protein, myosin subfragment 2, heavy meromyosin, essential light chain, motor protein; HET: MLY; 20.00A {Gallus gallus} SCOP: i.15.1.1 PDB: 3j04_A 3dtp_B 3dtp_A Back     alignment and structure
>2dfs_A Myosin-5A; myosin-V, inhibited state, cryoelectron tomograp contractIle protein-transport protein complex; 24.00A {Gallus gallus} Back     alignment and structure
>3na7_A HP0958; flagellar biogenesis, flagellum export, C4 Zn-ribbon, coiled post-transcriptional, gene regulation, chaperone; HET: EPE; 2.20A {Helicobacter pylori} Back     alignment and structure
>2v71_A Nuclear distribution protein NUDE-like 1; developmental protein, nuclear protein, neurogenesis, cytosk LIS1 binding, differentiation; 2.24A {Rattus norvegicus} Back     alignment and structure
>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae} Back     alignment and structure
>1c1g_A Tropomyosin; contractIle protein; 7.00A {Sus scrofa} SCOP: h.1.5.1 PDB: 2tma_A 2w49_A 2w4u_A Back     alignment and structure
>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae} Back     alignment and structure
>2dfs_A Myosin-5A; myosin-V, inhibited state, cryoelectron tomograp contractIle protein-transport protein complex; 24.00A {Gallus gallus} Back     alignment and structure
>1ml9_A Histone H3 methyltransferase DIM-5; adoMet-dependent methyltransferase histone H3 lysine- 9 methylation; 1.98A {Neurospora crassa} SCOP: b.85.7.1 PDB: 1peg_A* Back     alignment and structure
>1mvh_A Cryptic LOCI regulator 4; lysine methyltransferase, CLR4, SET-domain; 2.30A {Schizosaccharomyces pombe} SCOP: b.85.7.1 PDB: 1mvx_A Back     alignment and structure
>3na7_A HP0958; flagellar biogenesis, flagellum export, C4 Zn-ribbon, coiled post-transcriptional, gene regulation, chaperone; HET: EPE; 2.20A {Helicobacter pylori} Back     alignment and structure
>3hna_A Histone-lysine N-methyltransferase, H3 lysine-9 specific 5; EHMT1, structural genomics, SGC, structural genomics consortium, alternative splicing, ANK repeat; HET: MLZ SAH; 1.50A {Homo sapiens} PDB: 2rfi_A* 2igq_A* 3mo0_A* 3mo2_A* 3mo5_A* 3sw9_A* 3swc_A* 4h4h_A* 4i51_A* 3fpd_A* 3k5k_A* 3nni_A* 3rjw_A* 2o8j_A* Back     alignment and structure
>3s4r_A Vimentin; alpha-helix, cytoskeleton, intermediate filament, structural; 2.45A {Homo sapiens} PDB: 3ssu_A Back     alignment and structure
>1c1g_A Tropomyosin; contractIle protein; 7.00A {Sus scrofa} SCOP: h.1.5.1 PDB: 2tma_A 2w49_A 2w4u_A Back     alignment and structure
>1t2y_A Metallothionein, MT; protein fold, no secondary structural elements, metal binding protein; NMR {Synthetic} SCOP: g.46.1.1 Back     alignment and structure
>3tnu_B Keratin, type II cytoskeletal 5; coiled-coil, structural support, cytosolic protein; 3.00A {Homo sapiens} Back     alignment and structure
>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae} Back     alignment and structure
>3bo5_A Histone-lysine N-methyltransferase setmar; SET domain, chromati regulator, DNA damage, DNA repair, DNA-binding, nucleus, ST genomics; HET: SAH; 1.59A {Homo sapiens} Back     alignment and structure
>3tnu_A Keratin, type I cytoskeletal 14; coiled-coil, structural support, cytosolic protein; 3.00A {Homo sapiens} Back     alignment and structure

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against SCOP70(version1.75) database

No hit with e-value below 0.005

Homologous Domains Detected by HHsearch ?

Original result of HHsearch against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query468
d1qjla_28 Metallothionein {Purple sea urchin (Strongylocentr 95.87
d1t2ya_26 Metallothionein {Neurospora crassa [TaxId: 5141]} 95.18
d1ml9a_284 Dim-5 {Fungus (Neurospora crassa) [TaxId: 5141]} 92.66
d1m0ja_28 Metallothionein {Black rockcod (Notothenia coriice 89.77
d1mvha_269 SET domain of Clr4 {Fission yeast (Schizosaccharom 86.67
d1dmfa_28 Metallothionein {Crab (Callinectes sapidus), alpha 81.67
>d1qjla_ g.46.1.1 (A:) Metallothionein {Purple sea urchin (Strongylocentrotus purpuratus) [TaxId: 7668]} Back     information, alignment and structure
class: Small proteins
fold: Metallothionein
superfamily: Metallothionein
family: Metallothionein
domain: Metallothionein
species: Purple sea urchin (Strongylocentrotus purpuratus) [TaxId: 7668]

Probab=95.87  E-value=0.0023  Score=40.42  Aligned_cols=26  Identities=35%  Similarity=1.280  Sum_probs=21.3

Q ss_pred             cccCccccccCCCCCCCCcccCCcccC
Q 012231          362 CKTSKCECRVSGGSCGTSCGCAANKCT  388 (468)
Q Consensus       362 ckt~~c~c~~~~~~c~~~c~c~~~kc~  388 (468)
                      |....|.| +.|--||+||+|+...|.
T Consensus         2 ctnaackc-angckcgsgcsctegnca   27 (28)
T d1qjla_           2 CTNAACKC-ANGCKCGSGCSCTEGNCA   27 (28)
T ss_dssp             CCCTTCCC-CTTCCTTSCCCCBTTBCC
T ss_pred             cccccccc-ccCcccCCCccccCCccc
Confidence            56667777 568889999999998885
>d1t2ya_ g.46.1.1 (A:) Metallothionein {Neurospora crassa [TaxId: 5141]} Back     information, alignment and structure
>d1ml9a_ b.85.7.1 (A:) Dim-5 {Fungus (Neurospora crassa) [TaxId: 5141]} Back     information, alignment and structure
>d1m0ja_ g.46.1.1 (A:) Metallothionein {Black rockcod (Notothenia coriiceps) [TaxId: 8208]} Back     information, alignment and structure
>d1mvha_ b.85.7.1 (A:) SET domain of Clr4 {Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]} Back     information, alignment and structure
>d1dmfa_ g.46.1.1 (A:) Metallothionein {Crab (Callinectes sapidus), alpha and beta domains [TaxId: 6763]} Back     information, alignment and structure