Citrus Sinensis ID: 012255

Local Sequence Feature Prediction

Prediction and (Method)	Result

Residue Number Marker

Protein Sequence

Secondary Structure (PSIPRED)

Secondary Structure Prediction (SSPRO)

Coil and Loop (DISEMBL)

Flexible Loop (DISEMBL)

Low Complexity Region (SEG)

Disordered region (IsUnstruct)

Disordered Region (DISOPRED)

Disordered Region (DISEMBL)

Disordered Region (DISPRO)

Transmembrane Helix (TMHMM)

Transmembrane Helix (HMMTOP)

Transmembrane Helix (MEMSAT)

TM Helix, Signal Peptide (MEMSAT_SVM)

TM Helix, Signal Peptide (Phobius)

Signal Peptide (SignalP HMM Mode)

Signal Peptide (SignalP NN Mode)

Coiled Coils (COILS)

Positional Conservation

--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350-------360-------370-------380-------390-------400-------410-------420-------430-------440-------450-------460-------

MDTLPDHLVWEILGRIKKTVDRNSASLACKRFYEVDNEQRLSLRVGCGLDPVNEALTSLCNRFGNLTKVEISYAGWMSRLGKQLDDQGLLILSNSCPYLTDLTLNYCTFITDVGLCYLASCLNLSTLKLKFTTRITGCGILSVVVGCKNLTVLHLIRCLNVNSVEWLEYLGKLERLEDLLIKNCRAIGEGDLIKLGPCWRKLKRLQFEVDVNYRYMKVYDRLAVDRWQRQRVPCENMVELSLKNCIISPGRGLACVLGKCRNLEKIHLDMCVGVRDSDIINMAQTSSKLRSISLRVPSDFSLPILMSNPLRLTDESLKALADNCRMLESVRISFSDGEFPSISSFTLDGILTLIQKCPVRELSLDYVYSFNDVGMEALCSAHYLEILELARCQEISDEGLQLACQFPHLSILRLRKCLGVTDDGLKPLVGSHKLDLLAVEDCPQVSERGVQGAARSVSFRQDLSWMY

cccccHHHHHHHHcccccHHHHHHHHHHHHHHHHccccccEEEEEcccccccHHHHHHHHHccccccEEEEEcccccccccccccHHHHHHHHHccccccEEEccccccccHHHHHHHHccccccEEEccccccccHHHHHHHHHccccccEEEcccccccccHHHHHHHcccccccEEEccccccccHHHHHHHcccccccccccccccccccccccccHHHHHHHHHHccccccccEEEcccccccccHHHHHHHcccccccEEEccccccccHHHHHHHHHHcccccEEEEcccccccccccccccccccHHHHHHHHHccccccEEEEEccccccccccccHHHHHHHHHccccccEEEccccccccHHHHHHHHccccccEEEccccccccHHHHHHHcccccccEEEEcccccccHHHHHHHHccccccEEEEcccccccHHHHHHHHHccccccEEEEEc

cccccHHHHHHHHHHccccHHHHHHHHHHHHHHHHHHHcccEccccccccccHHHHHHHHHHcccccEEEEccccccccccccccHHHHHHHHHHcccccEEEccccccccHHHHHHHHHcccccEEEEcccccccHHHHHHHHHHcccccEEEccccccccHHHHHHHHHHccccEEEEEcccccccHHHHHHHHHHcccccEEEEEcccccHHHccccHccHHHHHHHHcccccccEEEccccccccHHHHHHHHHHcccccEEEccccccccHHHHHHHHHHcccccEEEcccccHHHHHHHHHccccccHHHHHHHHHHcccccEEEEcccccccccccccHHHHHHHHHcccccEEEEEcccccccHHHHHHHHHccccEEEEccccccccHHHHHHHHHcccccEEEccccccccHHHHHHHHccccccEEEEcccccccHHHHHHHHHccccccEEEEEc

MDTLPDHLVWEILGRIKKTVDRNSASLACKRFYEVDNEQRLSLRVGCGLDPVNEALTSLCNRFGNLTKVEISYAGWMSRLgkqlddqgllilsnscpyltdltlnyCTFITDVGLCYLASCLNLSTLklkfttritgcGILSVVVGCKNLTVLHLIRCLNVNSVEWLEYLGKLERLEDLLIKNCRaigegdliklgpcwrklkRLQFEVDVNYRYMKVYDRLAvdrwqrqrvpcenmVELSLknciispgrglaCVLGKCRNLEKIHLDMcvgvrdsdiINMAQTSSKlrsislrvpsdfslpilmsnplrltDESLKALADNCRMLESVRisfsdgefpsissftLDGILTLIQkcpvrelslDYVYSFNDVGMEALCSAHYLEILELARCQEISDEGLQLACQFPHLSILRLRKClgvtddglkplvgshkldllavedcpqvsergvqgaarSVSFRQDLSWMY

MDTLPDHLVWEILGrikktvdrnsaSLACKRFYEVDNEQRLSLRVGCGLDPVNEALTSLCNRFGNLTKVEISYAGWMSRLGKQLDDQGLLILSNSCPYLTDLTLNYCTFITDVGLCYLASCLNLSTLKLKFTTRITGCGILSVVVGCKNLTVLHLIRCLNVNSVEWLEYLGKLERLEDLLIKNCRAIgegdliklgpcwrKLKRlqfevdvnyrYMKVYDRLAVDRWQRQRVPCENMVELSLKNCIISPGRGLACVLGKCRNLEKIHLDMCVGVRDSDIINMAQtssklrsislrVPSDFSLPILMSNPLRLTDESLKALADNCRMLESVRIsfsdgefpsISSFTLDGILTLIQKCPVRELSLDYVYSFNDVGMEALCSAHYLEILELARCQEISDEGLQLACQFPHLSILRLRKCLGVTDDGLKPLVGSHKLDLLAVEDCpqvsergvqgaarsvsfrqdlswmy

*****DHLVWEILGRIKKTVDRNSASLACKRFYEVDNEQRLSLRVGCGLDPVNEALTSLCNRFGNLTKVEISYAGWMSRLGKQLDDQGLLILSNSCPYLTDLTLNYCTFITDVGLCYLASCLNLSTLKLKFTTRITGCGILSVVVGCKNLTVLHLIRCLNVNSVEWLEYLGKLERLEDLLIKNCRAIGEGDLIKLGPCWRKLKRLQFEVDVNYRYMKVYDRLAVDRWQRQRVPCENMVELSLKNCIISPGRGLACVLGKCRNLEKIHLDMCVGVRDSDIINMAQTSSKLRSISLRVPSDFSLPILMSNPLRLTDESLKALADNCRMLESVRISFSDGEFPSISSFTLDGILTLIQKCPVRELSLDYVYSFNDVGMEALCSAHYLEILELARCQEISDEGLQLACQFPHLSILRLRKCLGVTDDGLKPLVGSHKLDLLAVEDCPQ***********************

*DTLPDHLVWEILGRIKKTVDRNSASLACKRFYEVDNEQRLSLRVGCGLDPVNEALTSLCNRFGNLTKVEISYAGWMSRLGKQLDDQGLLILSNSCPYLTDLTLNYCTFITDVGLCYLASCLNLSTLKLKFTTRITGCGILSVVVGCKNLTVLHLIRCLNVNSVEWLEYLGKLERLEDLLIKNCRAIGEGDLIKLGPCWRKLKRLQFEVDVNYRYMKVYDRLAVDRWQRQRVPCENMVELSLKNCIISPGRGLACVLGKCRNLEKIHLDMCVGVRDSDIINMAQTSSKLRSISLRVPSDFSLPILMSNPLRLTDESLKALADNCRMLESVRISFSDGEFPSISSFTLDGILTLIQKCPVRELSLDYVYSFNDVGMEALCSAHYLEILELARCQEISDEGLQLACQFPHLSILRLRKCLGVTDDGLKPLVGSHKLDLLAVEDCPQVSERGVQGAARSVSFRQDLSWMY

ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo

iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhhhhhooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo

iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhoooooooooooooooooooooooooooooooooooooooooooooooooooooooooo

xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx

no confident homologs detected

Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Alignment graph	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query		467	2.2.26 [Sep-21-2011]
Q3EC97		480	F-box/LRR-repeat protein	yes	no	1.0	0.972	0.725	0.0
Q9C5D2		610	F-box/LRR-repeat protein	no	no	0.950	0.727	0.220	3e-19
Q9UKC9		423	F-box/LRR-repeat protein	yes	no	0.494	0.546	0.259	2e-12
Q5R3Z8		423	F-box/LRR-repeat protein	yes	no	0.494	0.546	0.259	2e-12
A6H779		423	F-box/LRR-repeat protein	yes	no	0.496	0.548	0.252	3e-12
Q96IG2		436	F-box/LRR-repeat protein	no	no	0.494	0.529	0.266	9e-12
Q58DG6		436	F-box/LRR-repeat protein	no	no	0.494	0.529	0.266	9e-12
Q9SKK0		628	EIN3-binding F-box protei	no	no	0.937	0.697	0.245	9e-12
Q9QZH7		276	F-box/LRR-repeat protein	yes	no	0.423	0.717	0.254	1e-11
Q9CZV8		436	F-box/LRR-repeat protein	yes	no	0.494	0.529	0.266	1e-11

>sp\|Q3EC97\|FBL14_ARATH F-box/LRR-repeat protein 14 OS=Arabidopsis thaliana GN=FBL14 PE=2 SV=1	Back alignment and function desciption

 Score =  699 bits (1803), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 339/467 (72%), Positives = 393/467 (84%)

Query: 1   MDTLPDHLVWEILGRIKKTVDRNSASLACKRFYEVDNEQRLSLRVGCGLDPVNEALTSLC 60
           MD LPDHLVW+IL ++  T DRNS SL+CKRF+ +DNEQR SLR+GCGL P ++AL SLC
Sbjct: 14  MDELPDHLVWDILSKLHTTDDRNSLSLSCKRFFSLDNEQRYSLRIGCGLVPASDALLSLC 73

Query: 61  NRFGNLTKVEISYAGWMSRLGKQLDDQGLLILSNSCPYLTDLTLNYCTFITDVGLCYLAS 120
            RF NL+KVEI Y+GWMS+LGKQ+DDQGLL+L+ +C  LTDLTL++CTFITDVG+ +L+S
Sbjct: 74  RRFPNLSKVEIIYSGWMSKLGKQVDDQGLLVLTTNCHSLTDLTLSFCTFITDVGIGHLSS 133

Query: 121 CLNLSTLKLKFTTRITGCGILSVVVGCKNLTVLHLIRCLNVNSVEWLEYLGKLERLEDLL 180
           C  LS+LKL F  RITGCG+LS+ VGCK L  LHLIRCLNV SVEWLEY GKLE LE+L 
Sbjct: 134 CPELSSLKLNFAPRITGCGVLSLAVGCKKLRRLHLIRCLNVASVEWLEYFGKLETLEELC 193

Query: 181 IKNCRAIGEGDLIKLGPCWRKLKRLQFEVDVNYRYMKVYDRLAVDRWQRQRVPCENMVEL 240
           IKNCRAIGEGDLIKL   WRKL  LQFEVD NYRYMKVYD+L V+RW +Q VPC+++VEL
Sbjct: 194 IKNCRAIGEGDLIKLRNSWRKLTSLQFEVDANYRYMKVYDQLDVERWPKQLVPCDSLVEL 253

Query: 241 SLKNCIISPGRGLACVLGKCRNLEKIHLDMCVGVRDSDIINMAQTSSKLRSISLRVPSDF 300
           SL NCII+PGRGLACVL  C+NLEK+HLDMC GV DSDII + Q +S LRSISLRVPSDF
Sbjct: 254 SLGNCIIAPGRGLACVLRNCKNLEKLHLDMCTGVSDSDIIALVQKASHLRSISLRVPSDF 313

Query: 301 SLPILMSNPLRLTDESLKALADNCRMLESVRISFSDGEFPSISSFTLDGILTLIQKCPVR 360
           +LP+L +  LRLTDESL A+A +C  LES +ISFSDGEFPS+ SFTL GI+TLIQKCPVR
Sbjct: 314 TLPLLNNITLRLTDESLSAIAQHCSKLESFKISFSDGEFPSLFSFTLQGIITLIQKCPVR 373

Query: 361 ELSLDYVYSFNDVGMEALCSAHYLEILELARCQEISDEGLQLACQFPHLSILRLRKCLGV 420
           ELSLD+V  FND+GMEALCSA  LEILEL  CQE+SDEGL L  QFP L++L+L KCLGV
Sbjct: 374 ELSLDHVCVFNDMGMEALCSAQKLEILELVHCQEVSDEGLILVSQFPSLNVLKLSKCLGV 433

Query: 421 TDDGLKPLVGSHKLDLLAVEDCPQVSERGVQGAARSVSFRQDLSWMY 467
           TDDG++PLVGSHKL+LL VEDCPQVS RGV GAA SVSF+QDLSWMY
Sbjct: 434 TDDGMRPLVGSHKLELLVVEDCPQVSRRGVHGAATSVSFKQDLSWMY 480

Arabidopsis thaliana (taxid: 3702)

>sp\|Q9C5D2\|FBL4_ARATH F-box/LRR-repeat protein 4 OS=Arabidopsis thaliana GN=FBL4 PE=2 SV=1	Back alignment and function description

>sp\|Q9UKC9\|FBXL2_HUMAN F-box/LRR-repeat protein 2 OS=Homo sapiens GN=FBXL2 PE=1 SV=3	Back alignment and function description

>sp\|Q5R3Z8\|FBXL2_PONAB F-box/LRR-repeat protein 2 OS=Pongo abelii GN=FBXL2 PE=2 SV=1	Back alignment and function description

>sp\|A6H779\|FBXL2_BOVIN F-box/LRR-repeat protein 2 OS=Bos taurus GN=FBXL2 PE=2 SV=1	Back alignment and function description

>sp\|Q96IG2\|FXL20_HUMAN F-box/LRR-repeat protein 20 OS=Homo sapiens GN=FBXL20 PE=1 SV=2	Back alignment and function description

>sp\|Q58DG6\|FXL20_BOVIN F-box/LRR-repeat protein 20 OS=Bos taurus GN=FBXL20 PE=2 SV=2	Back alignment and function description

>sp\|Q9SKK0\|EBF1_ARATH EIN3-binding F-box protein 1 OS=Arabidopsis thaliana GN=EBF1 PE=1 SV=1	Back alignment and function description

>sp\|Q9QZH7\|FXL20_RAT F-box/LRR-repeat protein 20 OS=Rattus norvegicus GN=Fbxl20 PE=1 SV=1	Back alignment and function description

>sp\|Q9CZV8\|FXL20_MOUSE F-box/LRR-repeat protein 20 OS=Mus musculus GN=Fbxl20 PE=1 SV=3	Back alignment and function description

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Alignment Graph	Length	Definition	Q cover	H cover	Identity	E-value
Query		467
224140797		467	predicted protein [Populus trichocarpa]	1.0	1.0	0.835	0.0
359482813		475	PREDICTED: F-box/LRR-repeat protein 14 [	1.0	0.983	0.828	0.0
356557231		492	PREDICTED: F-box/LRR-repeat protein 14-l	1.0	0.949	0.792	0.0
449436178		481	PREDICTED: F-box/LRR-repeat protein 14-l	1.0	0.970	0.766	0.0
18412871		467	F-box/LRR-repeat protein 14 [Arabidopsis	1.0	1.0	0.725	0.0
42572201		480	F-box/LRR-repeat protein 14 [Arabidopsis	1.0	0.972	0.725	0.0
356550650		449	PREDICTED: F-box/LRR-repeat protein 14-l	0.961	1.0	0.753	0.0
297743588		434	unnamed protein product [Vitis vinifera]	0.929	1.0	0.762	0.0
255579204		443	ubiquitin-protein ligase, putative [Rici	0.948	1.0	0.764	0.0
297839877		467	F-box family protein [Arabidopsis lyrata	1.0	1.0	0.732	0.0

>gi\|224140797\|ref\|XP_002323765.1\| predicted protein [Populus trichocarpa] gi\|222866767\|gb\|EEF03898.1\| predicted protein [Populus trichocarpa]	Back alignment and taxonomy information

 Score =  805 bits (2078), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 390/467 (83%), Positives = 424/467 (90%)

Query: 1   MDTLPDHLVWEILGRIKKTVDRNSASLACKRFYEVDNEQRLSLRVGCGLDPVNEALTSLC 60
           MD LPD LVW+IL R+KKTVD+NSASLACKR YE+DNEQR S+RVGCGLDP N+ALTSLC
Sbjct: 1   MDDLPDQLVWDILSRVKKTVDKNSASLACKRIYELDNEQRQSMRVGCGLDPANQALTSLC 60

Query: 61  NRFGNLTKVEISYAGWMSRLGKQLDDQGLLILSNSCPYLTDLTLNYCTFITDVGLCYLAS 120
           NRF NL KVEI+YAGWMS+LGKQLDDQGL+IL+N+CP LTDLTL+YCTFITDVGL +LAS
Sbjct: 61  NRFPNLAKVEITYAGWMSKLGKQLDDQGLVILANNCPSLTDLTLSYCTFITDVGLRHLAS 120

Query: 121 CLNLSTLKLKFTTRITGCGILSVVVGCKNLTVLHLIRCLNVNSVEWLEYLGKLERLEDLL 180
           C  LS LKL FT RITGCGILS+VVGCKNLT+LHLIRCLNV SVEWLEY+GKLE LEDL 
Sbjct: 121 CSKLSALKLNFTPRITGCGILSLVVGCKNLTILHLIRCLNVTSVEWLEYIGKLETLEDLS 180

Query: 181 IKNCRAIGEGDLIKLGPCWRKLKRLQFEVDVNYRYMKVYDRLAVDRWQRQRVPCENMVEL 240
           IKNCRA+GEGDLIKLG  WRKLKRLQFEVD NYRYMKVYDRLAVDRWQ+Q +PCE+M+EL
Sbjct: 181 IKNCRALGEGDLIKLGSSWRKLKRLQFEVDANYRYMKVYDRLAVDRWQKQWIPCESMLEL 240

Query: 241 SLKNCIISPGRGLACVLGKCRNLEKIHLDMCVGVRDSDIINMAQTSSKLRSISLRVPSDF 300
           SL NCIISPGRGLAC+LGKC+NLEKIHLDMCVGVRD DII +A+ SS LRSISLRVPSDF
Sbjct: 241 SLVNCIISPGRGLACMLGKCKNLEKIHLDMCVGVRDCDIIGLAKKSSNLRSISLRVPSDF 300

Query: 301 SLPILMSNPLRLTDESLKALADNCRMLESVRISFSDGEFPSISSFTLDGILTLIQKCPVR 360
           SLP+LM+NPLRLTDESLKALA NC MLESVRISFSDGEFPS SSFT +GIL LIQ CP+R
Sbjct: 301 SLPLLMNNPLRLTDESLKALAQNCSMLESVRISFSDGEFPSFSSFTQNGILNLIQMCPIR 360

Query: 361 ELSLDYVYSFNDVGMEALCSAHYLEILELARCQEISDEGLQLACQFPHLSILRLRKCLGV 420
           EL+LD+VYSFNDVGMEALCSAHYLE LEL RCQEISDEGLQL  QFP L ILRL+KCLGV
Sbjct: 361 ELALDHVYSFNDVGMEALCSAHYLETLELVRCQEISDEGLQLVGQFPRLCILRLKKCLGV 420

Query: 421 TDDGLKPLVGSHKLDLLAVEDCPQVSERGVQGAARSVSFRQDLSWMY 467
           TDDGL PL G+ KLD LAVEDCPQ+SERGVQGAARSVSFRQDLSWMY
Sbjct: 421 TDDGLYPLAGTDKLDFLAVEDCPQISERGVQGAARSVSFRQDLSWMY 467

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Class:

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi\|359482813\|ref\|XP_002272202.2\| PREDICTED: F-box/LRR-repeat protein 14 [Vitis vinifera]	Back alignment and taxonomy information

>gi\|356557231\|ref\|XP_003546921.1\| PREDICTED: F-box/LRR-repeat protein 14-like [Glycine max]	Back alignment and taxonomy information

>gi\|449436178\|ref\|XP_004135871.1\| PREDICTED: F-box/LRR-repeat protein 14-like [Cucumis sativus] gi\|449491060\|ref\|XP_004158787.1\| PREDICTED: F-box/LRR-repeat protein 14-like [Cucumis sativus]	Back alignment and taxonomy information

>gi|18412871|ref|NP_565240.1| F-box/LRR-repeat protein 14 [Arabidopsis thaliana] gi|42572203|ref|NP_974192.1| F-box/LRR-repeat protein 14 [Arabidopsis thaliana] gi|6730728|gb|AAF27118.1|AC018849_6 unknown protein; 27802-26399 [Arabidopsis thaliana] gi|27754663|gb|AAO22775.1| putative F-box family protein, AtFBL14 [Arabidopsis thaliana] gi|28393987|gb|AAO42401.1| putative F-box family protein, AtFBL14 [Arabidopsis thaliana] gi|332198301|gb|AEE36422.1| F-box/LRR-repeat protein 14 [Arabidopsis thaliana] gi|332198302|gb|AEE36423.1| F-box/LRR-repeat protein 14 [Arabidopsis thaliana]

Back alignment and taxonomy information

>gi\|42572201\|ref\|NP_974191.1\| F-box/LRR-repeat protein 14 [Arabidopsis thaliana] gi\|122239334\|sp\|Q3EC97.1\|FBL14_ARATH RecName: Full=F-box/LRR-repeat protein 14 gi\|332198300\|gb\|AEE36421.1\| F-box/LRR-repeat protein 14 [Arabidopsis thaliana]	Back alignment and taxonomy information

>gi\|356550650\|ref\|XP_003543698.1\| PREDICTED: F-box/LRR-repeat protein 14-like [Glycine max]	Back alignment and taxonomy information

>gi\|297743588\|emb\|CBI36455.3\| unnamed protein product [Vitis vinifera]	Back alignment and taxonomy information

>gi\|255579204\|ref\|XP_002530448.1\| ubiquitin-protein ligase, putative [Ricinus communis] gi\|223529993\|gb\|EEF31918.1\| ubiquitin-protein ligase, putative [Ricinus communis]	Back alignment and taxonomy information

>gi\|297839877\|ref\|XP_002887820.1\| F-box family protein [Arabidopsis lyrata subsp. lyrata] gi\|297333661\|gb\|EFH64079.1\| F-box family protein [Arabidopsis lyrata subsp. lyrata]	Back alignment and taxonomy information

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Alignment graph	Length	Definition	Q cover	H cover	Identity	E-value
Query		467
TAIR\|locus:2198883		480	AT1G80570 "AT1G80570" [Arabido	1.0	0.972	0.725	1.3e-185
TAIR\|locus:505006471		610	AT4G15475 "AT4G15475" [Arabido	0.944	0.722	0.236	2e-16
TAIR\|locus:2166978		405	AT5G23340 [Arabidopsis thalian	0.773	0.891	0.263	3.9e-16
TAIR\|locus:2149805		665	AT5G01720 "AT5G01720" [Arabido	0.952	0.669	0.26	8.6e-15
UNIPROTKB\|Q58DG6		436	FBXL20 "F-box/LRR-repeat prote	0.421	0.451	0.299	3.6e-12
UNIPROTKB\|Q96IG2		436	FBXL20 "F-box/LRR-repeat prote	0.421	0.451	0.299	3.6e-12
MGI\|MGI:1919444		436	Fbxl20 "F-box and leucine-rich	0.421	0.451	0.299	6e-12
TAIR\|locus:2155578		527	SKIP2 "AT5G67250" [Arabidopsis	0.785	0.696	0.25	3.3e-11
UNIPROTKB\|F1PWK1		422	FBXL2 "Uncharacterized protein	0.747	0.827	0.238	3.4e-11
UNIPROTKB\|Q5R3Z8		423	FBXL2 "F-box/LRR-repeat protei	0.749	0.827	0.238	3.4e-11

TAIR\|locus:2198883 AT1G80570 "AT1G80570" [Arabidopsis thaliana (taxid:3702)]	Back alignment and assigned GO terms

 Score = 1800 (638.7 bits), Expect = 1.3e-185, P = 1.3e-185
 Identities = 339/467 (72%), Positives = 393/467 (84%)

Query:     1 MDTLPDHLVWEILGRIKKTVDRNSASLACKRFYEVDNEQRLSLRVGCGLDPVNEALTSLC 60
             MD LPDHLVW+IL ++  T DRNS SL+CKRF+ +DNEQR SLR+GCGL P ++AL SLC
Sbjct:    14 MDELPDHLVWDILSKLHTTDDRNSLSLSCKRFFSLDNEQRYSLRIGCGLVPASDALLSLC 73

Query:    61 NRFGNLTKVEISYAGWMSRLGKQLDDQGLLILSNSCPYLTDLTLNYCTFITDVGLCYLAS 120
              RF NL+KVEI Y+GWMS+LGKQ+DDQGLL+L+ +C  LTDLTL++CTFITDVG+ +L+S
Sbjct:    74 RRFPNLSKVEIIYSGWMSKLGKQVDDQGLLVLTTNCHSLTDLTLSFCTFITDVGIGHLSS 133

Query:   121 CLNLSTLKLKFTTRITGCGILSVVVGCKNLTVLHLIRCLNVNSVEWLEYLGKLERLEDLL 180
             C  LS+LKL F  RITGCG+LS+ VGCK L  LHLIRCLNV SVEWLEY GKLE LE+L 
Sbjct:   134 CPELSSLKLNFAPRITGCGVLSLAVGCKKLRRLHLIRCLNVASVEWLEYFGKLETLEELC 193

Query:   181 IKNCRAIGEGDLIKLGPCWRKLKRLQFEVDVNYRYMKVYDRLAVDRWQRQRVPCENMVEL 240
             IKNCRAIGEGDLIKL   WRKL  LQFEVD NYRYMKVYD+L V+RW +Q VPC+++VEL
Sbjct:   194 IKNCRAIGEGDLIKLRNSWRKLTSLQFEVDANYRYMKVYDQLDVERWPKQLVPCDSLVEL 253

Query:   241 SLKNCIISPGRGLACVLGKCRNLEKIHLDMCVGVRDSDIINMAQTSSKLRSISLRVPSDF 300
             SL NCII+PGRGLACVL  C+NLEK+HLDMC GV DSDII + Q +S LRSISLRVPSDF
Sbjct:   254 SLGNCIIAPGRGLACVLRNCKNLEKLHLDMCTGVSDSDIIALVQKASHLRSISLRVPSDF 313

Query:   301 SLPILMSNPLRLTDESLKALADNCRMLESVRISFSDGEFPSISSFTLDGILTLIQKCPVR 360
             +LP+L +  LRLTDESL A+A +C  LES +ISFSDGEFPS+ SFTL GI+TLIQKCPVR
Sbjct:   314 TLPLLNNITLRLTDESLSAIAQHCSKLESFKISFSDGEFPSLFSFTLQGIITLIQKCPVR 373

Query:   361 ELSLDYVYSFNDVGMEALCSAHYLEILELARCQEISDEGLQLACQFPHLSILRLRKCLGV 420
             ELSLD+V  FND+GMEALCSA  LEILEL  CQE+SDEGL L  QFP L++L+L KCLGV
Sbjct:   374 ELSLDHVCVFNDMGMEALCSAQKLEILELVHCQEVSDEGLILVSQFPSLNVLKLSKCLGV 433

Query:   421 TDDGLKPLVGSHKLDLLAVEDCPQVSERGVQGAARSVSFRQDLSWMY 467
             TDDG++PLVGSHKL+LL VEDCPQVS RGV GAA SVSF+QDLSWMY
Sbjct:   434 TDDGMRPLVGSHKLELLVVEDCPQVSRRGVHGAATSVSFKQDLSWMY 480

GO:0004842 "ubiquitin-protein ligase activity" evidence=ISS

GO:0005634 "nucleus" evidence=ISM

GO:0006511 "ubiquitin-dependent protein catabolic process" evidence=TAS

TAIR\|locus:505006471 AT4G15475 "AT4G15475" [Arabidopsis thaliana (taxid:3702)]	Back alignment and assigned GO terms

TAIR\|locus:2166978 AT5G23340 [Arabidopsis thaliana (taxid:3702)]	Back alignment and assigned GO terms

TAIR\|locus:2149805 AT5G01720 "AT5G01720" [Arabidopsis thaliana (taxid:3702)]	Back alignment and assigned GO terms

UNIPROTKB\|Q58DG6 FBXL20 "F-box/LRR-repeat protein 20" [Bos taurus (taxid:9913)]	Back alignment and assigned GO terms

UNIPROTKB\|Q96IG2 FBXL20 "F-box/LRR-repeat protein 20" [Homo sapiens (taxid:9606)]	Back alignment and assigned GO terms

MGI\|MGI:1919444 Fbxl20 "F-box and leucine-rich repeat protein 20" [Mus musculus (taxid:10090)]	Back alignment and assigned GO terms

TAIR\|locus:2155578 SKIP2 "AT5G67250" [Arabidopsis thaliana (taxid:3702)]	Back alignment and assigned GO terms

UNIPROTKB\|F1PWK1 FBXL2 "Uncharacterized protein" [Canis lupus familiaris (taxid:9615)]	Back alignment and assigned GO terms

UNIPROTKB\|Q5R3Z8 FBXL2 "F-box/LRR-repeat protein 2" [Pongo abelii (taxid:9601)]	Back alignment and assigned GO terms

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

ID	Name	Annotated EC number	Identity	Query coverage	Hit coverage	RBH(Q2H)	RBH(H2Q)
Q3EC97	FBL14_ARATH	No assigned EC number	0.7259	1.0	0.9729	yes	no

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Fail to connect to STRING server

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Alignment Graph	Length	Definition	E-value
Query		467
cd09293		226	cd09293, AMN1, Antagonist of mitotic exit network	1e-08
cd09293		226	cd09293, AMN1, Antagonist of mitotic exit network	9e-08
cd09293		226	cd09293, AMN1, Antagonist of mitotic exit network	3e-05

>gnl\|CDD\|187754 cd09293, AMN1, Antagonist of mitotic exit network protein 1	Back alignment and domain information

 Score = 55.0 bits (133), Expect = 1e-08
 Identities = 50/202 (24%), Positives = 83/202 (41%), Gaps = 27/202 (13%)

Query: 228 QRQRVPCENMVELSLKNC-IISPGRGLACVLGKCRNLEKIHLDMCVGVRDSDIINMAQTS 286
           Q  R+    +  L L  C I  P       L  C  L+K+ L     + D  +I +AQ+ 
Sbjct: 21  QLLRILHSGLEWLELYMCPISDPPLDQ---LSNCNKLKKLILPGSKLIDDEGLIALAQSC 77

Query: 287 SKLRSISLRVPSDFSLPILMSNPLRLTDESLKALADNCRMLESVRISFSDGEFPSISSFT 346
             L+ + LR                +TD  + ALA NC  L+++ +    G   +    T
Sbjct: 78  PNLQVLDLRACE------------NITDSGIVALATNCPKLQTINL----GRHRNGHLIT 121

Query: 347 LDGILTLIQKCPVRELSLDYVYSF-NDVGMEALCS--AHYLEILELARCQEISDEGLQLA 403
              +  L + C   + ++ +      D G+  L S  +  LE L L  C+ ++D+ +   
Sbjct: 122 DVSLSALGKNCTFLQ-TVGFAGCDVTDKGVWELASGCSKSLERLSLNNCRNLTDQSIPAI 180

Query: 404 CQ---FPHLSILRLRKCLGVTD 422
                FP+LS+L  R C  +TD
Sbjct: 181 LASNYFPNLSVLEFRGCPLITD 202

Amn1 has been functionally characterized in Saccharomyces cerevisiae as a component of the Antagonist of MEN pathway (AMEN). The AMEN network is activated by MEN (mitotic exit network) via an active Cdc14, and in turn switches off MEN. Amn1 constitutes one of the alternative mechanisms by which MEN may be disrupted. Specifically, Amn1 binds Tem1 (Termination of M-phase, a GTPase that belongs to the RAS superfamily), and disrupts its association with Cdc15, the primary downstream target. Amn1 is a leucine-rich repeat (LRR) protein, with 12 repeats in the S. cerevisiae ortholog. As a negative regulator of the signal transduction pathway MEN, overexpression of AMN1 slows the growth of wild type cells. The function of the vertebrate members of this family has not been determined experimentally, they have fewer LRRs that determine the extent of this model. Length = 226

>gnl\|CDD\|187754 cd09293, AMN1, Antagonist of mitotic exit network protein 1	Back alignment and domain information

>gnl\|CDD\|187754 cd09293, AMN1, Antagonist of mitotic exit network protein 1	Back alignment and domain information

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Alignment Graph	Length	Definition	Probability
Query		467
KOG4341		483	consensus F-box protein containing LRR [General fu	100.0
KOG4341		483	consensus F-box protein containing LRR [General fu	99.97
KOG2120		419	consensus SCF ubiquitin ligase, Skp2 component [Po	99.92
KOG1947		482	consensus Leucine rich repeat proteins, some prote	99.71
KOG2120		419	consensus SCF ubiquitin ligase, Skp2 component [Po	99.69
PLN00113		968	leucine-rich repeat receptor-like protein kinase;	99.66
PLN00113		968	leucine-rich repeat receptor-like protein kinase;	99.64
cd00116		319	LRR_RI Leucine-rich repeats (LRRs), ribonuclease i	99.63
cd00116		319	LRR_RI Leucine-rich repeats (LRRs), ribonuclease i	99.61
KOG4194		873	consensus Membrane glycoprotein LIG-1 [Signal tran	99.6
KOG1947		482	consensus Leucine rich repeat proteins, some prote	99.56
KOG4194		873	consensus Membrane glycoprotein LIG-1 [Signal tran	99.51
PLN03210		1153	Resistant to P. syringae 6; Provisional	99.37
KOG1909		382	consensus Ran GTPase-activating protein [RNA proce	99.33
PLN03210		1153	Resistant to P. syringae 6; Provisional	99.28
KOG1909		382	consensus Ran GTPase-activating protein [RNA proce	99.01
KOG3207		505	consensus Beta-tubulin folding cofactor E [Posttra	98.89
PF12937		47	F-box-like: F-box-like; PDB: 1P22_A 2OVP_B 2OVR_B	98.88
KOG3207		505	consensus Beta-tubulin folding cofactor E [Posttra	98.81
KOG3665		699	consensus ZYG-1-like serine/threonine protein kina	98.62
KOG0444		1255	consensus Cytoskeletal regulator Flightless-I (con	98.61
KOG0444		1255	consensus Cytoskeletal regulator Flightless-I (con	98.61
KOG3864		221	consensus Uncharacterized conserved protein [Funct	98.48
KOG3665		699	consensus ZYG-1-like serine/threonine protein kina	98.44
KOG4237		498	consensus Extracellular matrix protein slit, conta	98.35
smart00256		41	FBOX A Receptor for Ubiquitination Targets.	98.35
PF00646		48	F-box: F-box domain; InterPro: IPR001810 The F-box	98.33
COG5238		388	RNA1 Ran GTPase-activating protein (RanGAP) involv	98.3
KOG0618		1081	consensus Serine/threonine phosphatase 2C containi	98.26
KOG2982		418	consensus Uncharacterized conserved protein [Funct	98.23
KOG0618		1081	consensus Serine/threonine phosphatase 2C containi	98.18
PRK15387		788	E3 ubiquitin-protein ligase SspH2; Provisional	98.1
KOG3864		221	consensus Uncharacterized conserved protein [Funct	98.08
KOG2982		418	consensus Uncharacterized conserved protein [Funct	98.05
PF14580		175	LRR_9: Leucine-rich repeat; PDB: 2JE1_D 2JE0_A 2JQ	98.05
KOG4237		498	consensus Extracellular matrix protein slit, conta	98.03
PRK15387		788	E3 ubiquitin-protein ligase SspH2; Provisional	98.01
PF14580		175	LRR_9: Leucine-rich repeat; PDB: 2JE1_D 2JE0_A 2JQ	97.99
COG5238		388	RNA1 Ran GTPase-activating protein (RanGAP) involv	97.8
PF13855		61	LRR_8: Leucine rich repeat; PDB: 2O6S_A 3A79_B 3RF	97.59
KOG4658		889	consensus Apoptotic ATPase [Signal transduction me	97.52
smart00367		26	LRR_CC Leucine-rich repeat - CC (cysteine-containi	97.46
KOG4658		889	consensus Apoptotic ATPase [Signal transduction me	97.43
smart00367		26	LRR_CC Leucine-rich repeat - CC (cysteine-containi	97.07
PRK15370		754	E3 ubiquitin-protein ligase SlrP; Provisional	96.94
PF13855		61	LRR_8: Leucine rich repeat; PDB: 2O6S_A 3A79_B 3RF	96.87
KOG1859		1096	consensus Leucine-rich repeat proteins [General fu	96.6
PRK15370		754	E3 ubiquitin-protein ligase SlrP; Provisional	96.57
KOG0617		264	consensus Ras suppressor protein (contains leucine	96.48
KOG4308		478	consensus LRR-containing protein [Function unknown	96.45
KOG4308		478	consensus LRR-containing protein [Function unknown	96.4
KOG1259		490	consensus Nischarin, modulator of integrin alpha5	96.33
KOG0472		565	consensus Leucine-rich repeat protein [Function un	96.32
KOG2739		260	consensus Leucine-rich acidic nuclear protein [Cel	96.32
KOG1859		1096	consensus Leucine-rich repeat proteins [General fu	96.25
KOG2123		388	consensus Uncharacterized conserved protein [Funct	96.0
KOG2739		260	consensus Leucine-rich acidic nuclear protein [Cel	95.89
PF12799		44	LRR_4: Leucine Rich repeats (2 copies); PDB: 2OMT_	95.85
KOG2123		388	consensus Uncharacterized conserved protein [Funct	95.47
PF12799		44	LRR_4: Leucine Rich repeats (2 copies); PDB: 2OMT_	95.4
PRK15386		426	type III secretion protein GogB; Provisional	95.3
PF13516		24	LRR_6: Leucine Rich repeat; PDB: 3RGZ_A 3RJ0_A 3RI	95.26
PLN03150		623	hypothetical protein; Provisional	95.2
PLN03215		373	ascorbic acid mannose pathway regulator 1; Provisi	95.13
KOG1259		490	consensus Nischarin, modulator of integrin alpha5	95.09
PLN03150		623	hypothetical protein; Provisional	94.68
KOG0472		565	consensus Leucine-rich repeat protein [Function un	94.62
KOG0281		499	consensus Beta-TrCP (transducin repeats containing	94.41
KOG2997		366	consensus F-box protein FBX9 [General function pre	94.17
PRK15386		426	type III secretion protein GogB; Provisional	93.89
KOG4579		177	consensus Leucine-rich repeat (LRR) protein associ	93.02
PF13516		24	LRR_6: Leucine Rich repeat; PDB: 3RGZ_A 3RJ0_A 3RI	92.53
KOG1644		233	consensus U2-associated snRNP A' protein [RNA proc	91.74
smart00368		28	LRR_RI Leucine rich repeat, ribonuclease inhibitor	91.5
PF13013		109	F-box-like_2: F-box-like domain	91.47
KOG1644		233	consensus U2-associated snRNP A' protein [RNA proc	90.08
KOG0617		264	consensus Ras suppressor protein (contains leucine	89.45
COG4886		394	Leucine-rich repeat (LRR) protein [Function unknow	88.93
COG4886		394	Leucine-rich repeat (LRR) protein [Function unknow	88.06
PF13306		129	LRR_5: Leucine rich repeats (6 copies); PDB: 3ZYJ_	87.73
PF13306		129	LRR_5: Leucine rich repeats (6 copies); PDB: 3ZYJ_	80.84

>KOG4341 consensus F-box protein containing LRR [General function prediction only]	Back alignment and domain information

Probab=100.00  E-value=2e-39  Score=286.60  Aligned_cols=372  Identities=25%  Similarity=0.406  Sum_probs=227.2

Q ss_pred             CCchHHHHHHHccCCCcchhhHHHHhhhHHHhhhhhccceEEeccC------CCCchhHHHHHHhhCCCccEEEeecccc
Q 012255            3 TLPDHLVWEILGRIKKTVDRNSASLACKRFYEVDNEQRLSLRVGCG------LDPVNEALTSLCNRFGNLTKVEISYAGW   76 (467)
Q Consensus         3 ~LP~ell~~If~~L~~~~~~~~~~~vck~w~~~~~~~~~~~~~~~~------~~~~~~~l~~~~~~~~~L~~L~l~~~~~   76 (467)
                      .||+|++..||++|+ .+.+++++.+|+.|+..+.....|-.++-.      ..++++.+...+.  ..|+.|.+++.  
T Consensus        74 ~LPpEl~lkvFS~LD-tksl~r~a~~c~~~n~~AlD~~~~q~idL~t~~rDv~g~VV~~~~~Rcg--g~lk~LSlrG~--  148 (483)
T KOG4341|consen   74 SLPPELLLKVFSMLD-TKSLCRAAQCCTMWNKLALDGSCWQHIDLFTFQRDVDGGVVENMISRCG--GFLKELSLRGC--  148 (483)
T ss_pred             cCCHHHHHHHHHHHh-HHHHHHHHHHHHHhhhhhhccccceeeehhcchhcCCCcceehHhhhhc--ccccccccccc--
Confidence            699999999999994 999999999999999886555444444311      1112222111111  23444444422  


Q ss_pred             cccCCCCCCHHHHHHHHhhCCCCCEEeecCCCCCChHhHHHHh-cCCCCceeeccCCCCCChhhHHHHHhcCCCCcEEec
Q 012255           77 MSRLGKQLDDQGLLILSNSCPYLTDLTLNYCTFITDVGLCYLA-SCLNLSTLKLKFTTRITGCGILSVVVGCKNLTVLHL  155 (467)
Q Consensus        77 ~~~~~~~i~~~~l~~l~~~~~~L~~L~l~~~~~~~~~~l~~l~-~~~~L~~L~l~~~~~~~~~~l~~~~~~~~~L~~L~l  155 (467)
                           ..+.+..+..+..+||++++|.+.+|.+++|..+..++ .|++|++|++..|..+|+..+..+..+|        
T Consensus       149 -----r~v~~sslrt~~~~CpnIehL~l~gc~~iTd~s~~sla~~C~~l~~l~L~~c~~iT~~~Lk~la~gC--------  215 (483)
T KOG4341|consen  149 -----RAVGDSSLRTFASNCPNIEHLALYGCKKITDSSLLSLARYCRKLRHLNLHSCSSITDVSLKYLAEGC--------  215 (483)
T ss_pred             -----ccCCcchhhHHhhhCCchhhhhhhcceeccHHHHHHHHHhcchhhhhhhcccchhHHHHHHHHHHhh--------
Confidence                 22444444444445555555555555555554444444 4455555555544444444444444444        


Q ss_pred             cCCcccCchHHHHHhcccccccccccccCCCCChhhHHhhccCcccccccccccccccccccchhhhhhhhhhhcccCCC
Q 012255          156 IRCLNVNSVEWLEYLGKLERLEDLLIKNCRAIGEGDLIKLGPCWRKLKRLQFEVDVNYRYMKVYDRLAVDRWQRQRVPCE  235 (467)
Q Consensus       156 ~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~  235 (467)
                                        ++|+++.+++|+.+...++..+..                                   ++.
T Consensus       216 ------------------~kL~~lNlSwc~qi~~~gv~~~~r-----------------------------------G~~  242 (483)
T KOG4341|consen  216 ------------------RKLKYLNLSWCPQISGNGVQALQR-----------------------------------GCK  242 (483)
T ss_pred             ------------------hhHHHhhhccCchhhcCcchHHhc-----------------------------------cch
Confidence                              455555555554444444443332                                   333


Q ss_pred             CcceeeccccCccCchhHHHHHhcCCCCcEEEcccCcccchhHHHHHHHhCCCCCeeeeccCCCCCccccccCCCCCCHH
Q 012255          236 NMVELSLKNCIISPGRGLACVLGKCRNLEKIHLDMCVGVRDSDIINMAQTSSKLRSISLRVPSDFSLPILMSNPLRLTDE  315 (467)
Q Consensus       236 ~L~~L~l~~~~~~~~~~l~~l~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~  315 (467)
                      +++.+...||.....+.+..+...++.+.++++..|..+++.++..+..+|..|+.+..++|.            .+++.
T Consensus       243 ~l~~~~~kGC~e~~le~l~~~~~~~~~i~~lnl~~c~~lTD~~~~~i~~~c~~lq~l~~s~~t------------~~~d~  310 (483)
T KOG4341|consen  243 ELEKLSLKGCLELELEALLKAAAYCLEILKLNLQHCNQLTDEDLWLIACGCHALQVLCYSSCT------------DITDE  310 (483)
T ss_pred             hhhhhhhcccccccHHHHHHHhccChHhhccchhhhccccchHHHHHhhhhhHhhhhcccCCC------------CCchH
Confidence            344444445555555555555556666666666666666666666666666666666666654            56666


Q ss_pred             HHHHHHhcCCCCCeEEecccCCCCCccccccHHHHHHHHHhCC-CcEeeccccccccHHHHHHHH-hCCCCCEEeecCCC
Q 012255          316 SLKALADNCRMLESVRISFSDGEFPSISSFTLDGILTLIQKCP-VRELSLDYVYSFNDVGMEALC-SAHYLEILELARCQ  393 (467)
Q Consensus       316 ~l~~l~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~l~~~~~-L~~L~l~~~~~~~~~~~~~l~-~~~~L~~L~l~~c~  393 (467)
                      .+.++..++++|+.|.+..|       ..+++.++..+..+|+ |+.+++.+|..+.+..+..++ +|+.|+.|.+++|.
T Consensus       311 ~l~aLg~~~~~L~~l~l~~c-------~~fsd~~ft~l~rn~~~Le~l~~e~~~~~~d~tL~sls~~C~~lr~lslshce  383 (483)
T KOG4341|consen  311 VLWALGQHCHNLQVLELSGC-------QQFSDRGFTMLGRNCPHLERLDLEECGLITDGTLASLSRNCPRLRVLSLSHCE  383 (483)
T ss_pred             HHHHHhcCCCceEEEecccc-------chhhhhhhhhhhcCChhhhhhcccccceehhhhHhhhccCCchhccCChhhhh
Confidence            66666666667777766663       5566666666666666 777777666666666666666 57777777777777


Q ss_pred             CcCHHHHHHhcC----CCCCCEEeecCCCCCCccchHhhhcCCCCCeeccCCCCCCCHHHHHHHHhhcccccccc
Q 012255          394 EISDEGLQLACQ----FPHLSILRLRKCLGVTDDGLKPLVGSHKLDLLAVEDCPQVSERGVQGAARSVSFRQDLS  464 (467)
Q Consensus       394 ~it~~~~~~l~~----~~~L~~L~l~~c~~it~~~~~~l~~~~~L~~L~l~~c~~~~~~~~~~l~~~~~~~~~l~  464 (467)
                      .+||+++..+..    ...|+.+++.+|+.+++..+.++..|++|+.+++.+|..++++++..+..+++.+....
T Consensus       384 ~itD~gi~~l~~~~c~~~~l~~lEL~n~p~i~d~~Le~l~~c~~Leri~l~~~q~vtk~~i~~~~~~lp~i~v~a  458 (483)
T KOG4341|consen  384 LITDEGIRHLSSSSCSLEGLEVLELDNCPLITDATLEHLSICRNLERIELIDCQDVTKEAISRFATHLPNIKVHA  458 (483)
T ss_pred             hhhhhhhhhhhhccccccccceeeecCCCCchHHHHHHHhhCcccceeeeechhhhhhhhhHHHHhhCccceehh
Confidence            777777666652    45677777777777777777777777777777777777777777777777777665543

>KOG4341 consensus F-box protein containing LRR [General function prediction only]	Back alignment and domain information

>KOG2120 consensus SCF ubiquitin ligase, Skp2 component [Posttranslational modification, protein turnover, chaperones]	Back alignment and domain information

>KOG1947 consensus Leucine rich repeat proteins, some proteins contain F-box [General function prediction only]	Back alignment and domain information

>KOG2120 consensus SCF ubiquitin ligase, Skp2 component [Posttranslational modification, protein turnover, chaperones]	Back alignment and domain information

>PLN00113 leucine-rich repeat receptor-like protein kinase; Provisional	Back alignment and domain information

>PLN00113 leucine-rich repeat receptor-like protein kinase; Provisional	Back alignment and domain information

>cd00116 LRR_RI Leucine-rich repeats (LRRs), ribonuclease inhibitor (RI)-like subfamily	Back alignment and domain information

>cd00116 LRR_RI Leucine-rich repeats (LRRs), ribonuclease inhibitor (RI)-like subfamily	Back alignment and domain information

>KOG4194 consensus Membrane glycoprotein LIG-1 [Signal transduction mechanisms]	Back alignment and domain information

>KOG1947 consensus Leucine rich repeat proteins, some proteins contain F-box [General function prediction only]	Back alignment and domain information

>KOG4194 consensus Membrane glycoprotein LIG-1 [Signal transduction mechanisms]	Back alignment and domain information

>PLN03210 Resistant to P	Back alignment and domain information

>KOG1909 consensus Ran GTPase-activating protein [RNA processing and modification; Nuclear structure; Signal transduction mechanisms]	Back alignment and domain information

>PLN03210 Resistant to P	Back alignment and domain information

>KOG1909 consensus Ran GTPase-activating protein [RNA processing and modification; Nuclear structure; Signal transduction mechanisms]	Back alignment and domain information

>KOG3207 consensus Beta-tubulin folding cofactor E [Posttranslational modification, protein turnover, chaperones]	Back alignment and domain information

>PF12937 F-box-like: F-box-like; PDB: 1P22_A 2OVP_B 2OVR_B 2OVQ_B 1FS1_A 1FS2_C 1FQV_I 1LDK_E 2AST_B 2ASS_B	Back alignment and domain information

>KOG3207 consensus Beta-tubulin folding cofactor E [Posttranslational modification, protein turnover, chaperones]	Back alignment and domain information

>KOG3665 consensus ZYG-1-like serine/threonine protein kinases [General function prediction only]	Back alignment and domain information

>KOG0444 consensus Cytoskeletal regulator Flightless-I (contains leucine-rich and gelsolin repeats) [Cytoskeleton]	Back alignment and domain information

>KOG0444 consensus Cytoskeletal regulator Flightless-I (contains leucine-rich and gelsolin repeats) [Cytoskeleton]	Back alignment and domain information

>KOG3864 consensus Uncharacterized conserved protein [Function unknown]	Back alignment and domain information

>KOG3665 consensus ZYG-1-like serine/threonine protein kinases [General function prediction only]	Back alignment and domain information

>KOG4237 consensus Extracellular matrix protein slit, contains leucine-rich and EGF-like repeats [Extracellular structures; Signal transduction mechanisms]	Back alignment and domain information

>smart00256 FBOX A Receptor for Ubiquitination Targets	Back alignment and domain information

>PF00646 F-box: F-box domain; InterPro: IPR001810 The F-box domain was first described as a sequence motif found in cyclin-F that interacts with the protein SKP1 [, ]	Back alignment and domain information

>COG5238 RNA1 Ran GTPase-activating protein (RanGAP) involved in mRNA processing and transport [Signal transduction mechanisms / RNA processing and modification]	Back alignment and domain information

>KOG0618 consensus Serine/threonine phosphatase 2C containing leucine-rich repeats, similar to SCN circadian oscillatory protein (SCOP) [Signal transduction mechanisms]	Back alignment and domain information

>KOG2982 consensus Uncharacterized conserved protein [Function unknown]	Back alignment and domain information

>KOG0618 consensus Serine/threonine phosphatase 2C containing leucine-rich repeats, similar to SCN circadian oscillatory protein (SCOP) [Signal transduction mechanisms]	Back alignment and domain information

>PRK15387 E3 ubiquitin-protein ligase SspH2; Provisional	Back alignment and domain information

>KOG3864 consensus Uncharacterized conserved protein [Function unknown]	Back alignment and domain information

>KOG2982 consensus Uncharacterized conserved protein [Function unknown]	Back alignment and domain information

>PF14580 LRR_9: Leucine-rich repeat; PDB: 2JE1_D 2JE0_A 2JQD_A	Back alignment and domain information

>KOG4237 consensus Extracellular matrix protein slit, contains leucine-rich and EGF-like repeats [Extracellular structures; Signal transduction mechanisms]	Back alignment and domain information

>PRK15387 E3 ubiquitin-protein ligase SspH2; Provisional	Back alignment and domain information

>PF14580 LRR_9: Leucine-rich repeat; PDB: 2JE1_D 2JE0_A 2JQD_A	Back alignment and domain information

>COG5238 RNA1 Ran GTPase-activating protein (RanGAP) involved in mRNA processing and transport [Signal transduction mechanisms / RNA processing and modification]	Back alignment and domain information

>PF13855 LRR_8: Leucine rich repeat; PDB: 2O6S_A 3A79_B 3RFS_A 3G39_A 3VQ2_A 3VQ1_B 2Z64_A 2Z66_C 3FXI_A 2Z63_A	Back alignment and domain information

>KOG4658 consensus Apoptotic ATPase [Signal transduction mechanisms]	Back alignment and domain information

>smart00367 LRR_CC Leucine-rich repeat - CC (cysteine-containing) subfamily	Back alignment and domain information

>KOG4658 consensus Apoptotic ATPase [Signal transduction mechanisms]	Back alignment and domain information

>smart00367 LRR_CC Leucine-rich repeat - CC (cysteine-containing) subfamily	Back alignment and domain information

>PRK15370 E3 ubiquitin-protein ligase SlrP; Provisional	Back alignment and domain information

>PF13855 LRR_8: Leucine rich repeat; PDB: 2O6S_A 3A79_B 3RFS_A 3G39_A 3VQ2_A 3VQ1_B 2Z64_A 2Z66_C 3FXI_A 2Z63_A	Back alignment and domain information

>KOG1859 consensus Leucine-rich repeat proteins [General function prediction only]	Back alignment and domain information

>PRK15370 E3 ubiquitin-protein ligase SlrP; Provisional	Back alignment and domain information

>KOG0617 consensus Ras suppressor protein (contains leucine-rich repeats) [Signal transduction mechanisms]	Back alignment and domain information

>KOG4308 consensus LRR-containing protein [Function unknown]	Back alignment and domain information

>KOG4308 consensus LRR-containing protein [Function unknown]	Back alignment and domain information

>KOG1259 consensus Nischarin, modulator of integrin alpha5 subunit action [Signal transduction mechanisms; Cytoskeleton]	Back alignment and domain information

>KOG0472 consensus Leucine-rich repeat protein [Function unknown]	Back alignment and domain information

>KOG2739 consensus Leucine-rich acidic nuclear protein [Cell cycle control, cell division, chromosome partitioning; General function prediction only]	Back alignment and domain information

>KOG1859 consensus Leucine-rich repeat proteins [General function prediction only]	Back alignment and domain information

>KOG2123 consensus Uncharacterized conserved protein [Function unknown]	Back alignment and domain information

>KOG2739 consensus Leucine-rich acidic nuclear protein [Cell cycle control, cell division, chromosome partitioning; General function prediction only]	Back alignment and domain information

>PF12799 LRR_4: Leucine Rich repeats (2 copies); PDB: 2OMT_A 1XEU_A 2OMX_A 2OMU_A 2UZY_A 2WQU_D 1D0B_A 2WQW_A 1OTO_A 2WQV_B	Back alignment and domain information

>KOG2123 consensus Uncharacterized conserved protein [Function unknown]	Back alignment and domain information

>PF12799 LRR_4: Leucine Rich repeats (2 copies); PDB: 2OMT_A 1XEU_A 2OMX_A 2OMU_A 2UZY_A 2WQU_D 1D0B_A 2WQW_A 1OTO_A 2WQV_B	Back alignment and domain information

>PRK15386 type III secretion protein GogB; Provisional	Back alignment and domain information

>PF13516 LRR_6: Leucine Rich repeat; PDB: 3RGZ_A 3RJ0_A 3RIZ_A 3RGX_A 1DFJ_I 2BNH_A 3VQ1_A 3VQ2_A 2Z64_A 2OMX_A	Back alignment and domain information

>PLN03150 hypothetical protein; Provisional	Back alignment and domain information

>PLN03215 ascorbic acid mannose pathway regulator 1; Provisional	Back alignment and domain information

>KOG1259 consensus Nischarin, modulator of integrin alpha5 subunit action [Signal transduction mechanisms; Cytoskeleton]	Back alignment and domain information

>PLN03150 hypothetical protein; Provisional	Back alignment and domain information

>KOG0472 consensus Leucine-rich repeat protein [Function unknown]	Back alignment and domain information

>KOG0281 consensus Beta-TrCP (transducin repeats containing)/Slimb proteins [Function unknown]	Back alignment and domain information

>KOG2997 consensus F-box protein FBX9 [General function prediction only]	Back alignment and domain information

>PRK15386 type III secretion protein GogB; Provisional	Back alignment and domain information

>KOG4579 consensus Leucine-rich repeat (LRR) protein associated with apoptosis in muscle tissue [General function prediction only]	Back alignment and domain information

>PF13516 LRR_6: Leucine Rich repeat; PDB: 3RGZ_A 3RJ0_A 3RIZ_A 3RGX_A 1DFJ_I 2BNH_A 3VQ1_A 3VQ2_A 2Z64_A 2OMX_A	Back alignment and domain information

>KOG1644 consensus U2-associated snRNP A' protein [RNA processing and modification]	Back alignment and domain information

>smart00368 LRR_RI Leucine rich repeat, ribonuclease inhibitor type	Back alignment and domain information

>PF13013 F-box-like_2: F-box-like domain	Back alignment and domain information

>KOG1644 consensus U2-associated snRNP A' protein [RNA processing and modification]	Back alignment and domain information

>KOG0617 consensus Ras suppressor protein (contains leucine-rich repeats) [Signal transduction mechanisms]	Back alignment and domain information

>COG4886 Leucine-rich repeat (LRR) protein [Function unknown]	Back alignment and domain information

>COG4886 Leucine-rich repeat (LRR) protein [Function unknown]	Back alignment and domain information

>PF13306 LRR_5: Leucine rich repeats (6 copies); PDB: 3ZYJ_A 3V47_B 3V44_A 3ZYN_A 3ZYO_A 3SB4_A	Back alignment and domain information

>PF13306 LRR_5: Leucine rich repeats (6 copies); PDB: 3ZYJ_A 3V47_B 3V44_A 3ZYN_A 3ZYO_A 3SB4_A	Back alignment and domain information

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

ID	Alignment Graph	Length	Definition	E-value
Query		467
3ogk_B		592	Structure Of Coi1-Ask1 In Complex With Coronatine A		4e-05

>pdb|3OGK|B Chain B, Structure Of Coi1-Ask1 In Complex With Coronatine And An Incomplete Jaz1 Degron Length = 592

Back alignment and structure

Iteration: 1

Score = 46.2 bits (108), Expect = 4e-05, Method: Compositional matrix adjust. Identities = 107/509 (21%), Positives = 209/509 (41%), Gaps = 79/509 (15%) Query: 6 DHLVWEILGRIKKTVDRNSASLACKRFYEVDNEQRLSLRVGCGLDPVNEALTSLCNRFGN 65 D ++ +++ I DR+SASL C+R++++D+E R + + + L+ RF N Sbjct: 18 DDVIEQVMTYITDPKDRDSASLVCRRWFKIDSETREHVTMALCYTATPDRLS---RRFPN 74 Query: 66 LTKVEISYAGWMSRLGKQLDDQGLLILSNSCPYLTDLTLNYCTF---------ITDVGLC 116 L +++ + ++ G + P++T+++ N ++D+ L Sbjct: 75 LRSLKLKGKPRAAMFNLIPENWGGYV----TPWVTEISNNLRQLKSVHFRRMIVSDLDLD 130 Query: 117 YLASCL--NLSTLKLKFTTRITGCGILSVVVGCKNL-TVLHLIRCLNVNSVEWLEYLGK- 172 LA +L TLKL + T G+LS+V C+ + T+L + +WL L + Sbjct: 131 RLAKARADDLETLKLDKCSGFTTDGLLSIVTHCRKIKTLLMEESSFSEKDGKWLHELAQH 190 Query: 173 ---LERLE--------------DLLIKNCRA-----IGEGDLIKLGPCWRKLKRLQ---- 206 LE L + + +NCR+ +G+ ++++L ++ L+ Sbjct: 191 NTSLEVLNFYMTEFAKISPKDLETIARNCRSLVSVKVGDFEILELVGFFKAAANLEEFCG 250 Query: 207 ----FEVDVNYRYMKVYD-----RLAVDRWQRQRVP-----CENMVELSLKNCIISPGRG 252 ++ + +YM + RL + +P + +L L ++ Sbjct: 251 GSLNEDIGMPEKYMNLVFPRKLCRLGLSYMGPNEMPILFPFAAQIRKLDLLYALLET-ED 309 Query: 253 LACVLGKCRNLEKIHLDMCVGVRDSDIINMAQTSSKLRSISLRVPSDFSLPILMSNPLRL 312 ++ KC NLE + +G R ++ +AQ +L+ LR+ + + Sbjct: 310 HCTLIQKCPNLEVLETRNVIGDRGLEV--LAQYCKQLK--RLRIERGADEQGMEDEEGLV 365 Query: 313 TDESLKALADNCRMLESVRISFSDGEFPSISSFTLDGILTLIQK-CPVRELSLDYVYSFN 371 + L ALA C+ LE + + SD I++ +L+ I T ++ C R + LD Sbjct: 366 SQRGLIALAQGCQELEYMAVYVSD-----ITNESLESIGTYLKNLCDFRLVLLDREERIT 420 Query: 372 DVGMEALCSAHYLEILELARCQ------EISDEGLQLACQFPHLSILRLRKCLGVTDDGL 425 D+ ++ + + +L R ++D GL Q+ L +G +D+GL Sbjct: 421 DLPLDNGVRSLLIGCKKLRRFAFYLRQGGLTDLGLSYIGQYSPNVRWMLLGYVGESDEGL 480 Query: 426 KPLV-GSHKLDLLAVEDCPQVSERGVQGA 453 G L L + C SER + A Sbjct: 481 MEFSRGCPNLQKLEMRGCC-FSERAIAAA 508

PyMOL of 3ogk

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Alignment Graph	Length	Definition	E-value
Query		467
3ogk_B		592	Coronatine-insensitive protein 1; leucine rich rep	9e-56
3ogk_B		592	Coronatine-insensitive protein 1; leucine rich rep	2e-27
3ogk_B		592	Coronatine-insensitive protein 1; leucine rich rep	3e-13
2p1m_B		594	Transport inhibitor response 1 protein; F-BOX, leu	8e-51
2p1m_B		594	Transport inhibitor response 1 protein; F-BOX, leu	6e-28
2p1m_B		594	Transport inhibitor response 1 protein; F-BOX, leu	6e-08
2ast_B		336	S-phase kinase-associated protein 2; SCF-substrate	4e-19
2ast_B		336	S-phase kinase-associated protein 2; SCF-substrate	2e-18
3e4g_A		176	ATP synthase subunit S, mitochondrial; leucine-ric	2e-11
3e4g_A		176	ATP synthase subunit S, mitochondrial; leucine-ric	2e-09
3e4g_A		176	ATP synthase subunit S, mitochondrial; leucine-ric	2e-09
3e4g_A		176	ATP synthase subunit S, mitochondrial; leucine-ric	5e-07
3e4g_A		176	ATP synthase subunit S, mitochondrial; leucine-ric	8e-07
3e4g_A		176	ATP synthase subunit S, mitochondrial; leucine-ric	5e-05
3e4g_A		176	ATP synthase subunit S, mitochondrial; leucine-ric	2e-04
1vt4_I		1221	APAF-1 related killer DARK; drosophila apoptosome,	1e-07
1vt4_I		1221	APAF-1 related killer DARK; drosophila apoptosome,	5e-07
1z7x_W		461	Ribonuclease inhibitor; leucine-rich repeat, enzym	9e-07
1z7x_W		461	Ribonuclease inhibitor; leucine-rich repeat, enzym	2e-04
2ca6_A		386	RAN GTPase-activating protein 1; GAP, GTPase activ	8e-06

>3ogk_B Coronatine-insensitive protein 1; leucine rich repeat, ubiquitin ligase, SCF, protein binding; HET: OGK; 2.80A {Arabidopsis thaliana} PDB: 3ogl_B* 3ogm_B* Length = 592	Back alignment and structure

 Score =  194 bits (493), Expect = 9e-56
 Identities = 98/518 (18%), Positives = 185/518 (35%), Gaps = 83/518 (16%)

Query: 2   DTLPDHLVWEILGRIKKTVDRNSASLACKRFYEVDNEQRLSLRVGCGLDPVNEALTSLCN 61
               D ++ +++  I    DR+SASL C+R++++D+E R  + +        +    L  
Sbjct: 14  VATVDDVIEQVMTYITDPKDRDSASLVCRRWFKIDSETREHVTMALCYTATPD---RLSR 70

Query: 62  RFGNLTKVEISYAGWMSRLGKQLDDQG------LLILSNSCPYLTDLTLNYCTFITDVGL 115
           RF NL  +++      +      ++ G      +  +SN+   L  +       ++D+ L
Sbjct: 71  RFPNLRSLKLKGKPRAAMFNLIPENWGGYVTPWVTEISNNLRQLKSVHFRRMI-VSDLDL 129

Query: 116 CYLAS--CLNLSTLKLKFTTRITGCGILSVVVGCKNLTVLHLIRCLNVN-SVEWLEYLGK 172
             LA     +L TLKL   +  T  G+LS+V  C+ +  L +          +WL  L +
Sbjct: 130 DRLAKARADDLETLKLDKCSGFTTDGLLSIVTHCRKIKTLLMEESSFSEKDGKWLHELAQ 189

Query: 173 ----LERLEDLLIKNCRAIGEGDLIKLGPCWRKLKRLQF--------------------- 207
               LE L +  +     I   DL  +    R L  ++                      
Sbjct: 190 HNTSLEVL-NFYMTEFAKISPKDLETIARNCRSLVSVKVGDFEILELVGFFKAAANLEEF 248

Query: 208 -------EVDVNYRYMKVYDRLAVDRWQRQRV----------PCENMVELSLKNCIISPG 250
                  ++ +  +YM +     + R     +              + +L L   ++   
Sbjct: 249 CGGSLNEDIGMPEKYMNLVFPRKLCRLGLSYMGPNEMPILFPFAAQIRKLDLLYALLETE 308

Query: 251 RGLACVLGKCRNLEKIHLDMCVGVRDSDIINMAQTSSKLRSISLRVPSDFSLPILMSNPL 310
                ++ KC NLE +     +G  D  +  +AQ   +L+ + +          +     
Sbjct: 309 DHCT-LIQKCPNLEVLETRNVIG--DRGLEVLAQYCKQLKRLRIE--RGADEQGMEDEEG 363

Query: 311 RLTDESLKALADNCRMLESVRISFSDGEFPSISSFTLDGILTLIQKCP----VRELSLDY 366
            ++   L ALA  C+ LE + +  SD         T + + ++          R + LD 
Sbjct: 364 LVSQRGLIALAQGCQELEYMAVYVSD--------ITNESLESIGTYLKNLCDFRLVLLDR 415

Query: 367 VYSFNDVGMEA-----LCSAHYLEILEL-ARCQEISDEGLQ-LACQFPHLSILRLRKCLG 419
                D+ ++      L     L       R   ++D GL  +    P++  + L    G
Sbjct: 416 EERITDLPLDNGVRSLLIGCKKLRRFAFYLRQGGLTDLGLSYIGQYSPNVRWMLLGYV-G 474

Query: 420 VTDDGLKPLV-GSHKLDLLAVEDCPQVSERGVQGAARS 456
            +D+GL     G   L  L +  C   SER +  A   
Sbjct: 475 ESDEGLMEFSRGCPNLQKLEMRGCC-FSERAIAAAVTK 511

PyMOL of 3ogk

>3ogk_B Coronatine-insensitive protein 1; leucine rich repeat, ubiquitin ligase, SCF, protein binding; HET: OGK; 2.80A {Arabidopsis thaliana} PDB: 3ogl_B* 3ogm_B* Length = 592	Back alignment and structure

>3ogk_B Coronatine-insensitive protein 1; leucine rich repeat, ubiquitin ligase, SCF, protein binding; HET: OGK; 2.80A {Arabidopsis thaliana} PDB: 3ogl_B* 3ogm_B* Length = 592	Back alignment and structure

>2p1m_B Transport inhibitor response 1 protein; F-BOX, leucine rich repeat, signaling protein; HET: IHP; 1.80A {Arabidopsis thaliana} PDB: 2p1n_B* 2p1o_B* 2p1p_B* 2p1q_B* 3c6n_B* 3c6o_B* 3c6p_B* Length = 594	Back alignment and structure

>2p1m_B Transport inhibitor response 1 protein; F-BOX, leucine rich repeat, signaling protein; HET: IHP; 1.80A {Arabidopsis thaliana} PDB: 2p1n_B* 2p1o_B* 2p1p_B* 2p1q_B* 3c6n_B* 3c6o_B* 3c6p_B* Length = 594	Back alignment and structure

>2p1m_B Transport inhibitor response 1 protein; F-BOX, leucine rich repeat, signaling protein; HET: IHP; 1.80A {Arabidopsis thaliana} PDB: 2p1n_B* 2p1o_B* 2p1p_B* 2p1q_B* 3c6n_B* 3c6o_B* 3c6p_B* Length = 594	Back alignment and structure

>2ast_B S-phase kinase-associated protein 2; SCF-substrate complex, LRR, cell cycle, protein turnover COM ligase-ligase inhibitor complex; HET: TPO; 2.30A {Homo sapiens} SCOP: a.158.1.1 c.10.1.3 PDB: 2ass_B 1fqv_A* 1fs2_A Length = 336	Back alignment and structure

>2ast_B S-phase kinase-associated protein 2; SCF-substrate complex, LRR, cell cycle, protein turnover COM ligase-ligase inhibitor complex; HET: TPO; 2.30A {Homo sapiens} SCOP: a.158.1.1 c.10.1.3 PDB: 2ass_B 1fqv_A* 1fs2_A Length = 336	Back alignment and structure

>3e4g_A ATP synthase subunit S, mitochondrial; leucine-rich repeat, CF0, hydrogen ION transport, inner membrane, ION transport, membrane, mitochondrion; 0.96A {Bos taurus} PDB: 3e3z_A 3dze_A 3e2j_A Length = 176	Back alignment and structure

>3e4g_A ATP synthase subunit S, mitochondrial; leucine-rich repeat, CF0, hydrogen ION transport, inner membrane, ION transport, membrane, mitochondrion; 0.96A {Bos taurus} PDB: 3e3z_A 3dze_A 3e2j_A Length = 176	Back alignment and structure

>3e4g_A ATP synthase subunit S, mitochondrial; leucine-rich repeat, CF0, hydrogen ION transport, inner membrane, ION transport, membrane, mitochondrion; 0.96A {Bos taurus} PDB: 3e3z_A 3dze_A 3e2j_A Length = 176	Back alignment and structure

>3e4g_A ATP synthase subunit S, mitochondrial; leucine-rich repeat, CF0, hydrogen ION transport, inner membrane, ION transport, membrane, mitochondrion; 0.96A {Bos taurus} PDB: 3e3z_A 3dze_A 3e2j_A Length = 176	Back alignment and structure

>3e4g_A ATP synthase subunit S, mitochondrial; leucine-rich repeat, CF0, hydrogen ION transport, inner membrane, ION transport, membrane, mitochondrion; 0.96A {Bos taurus} PDB: 3e3z_A 3dze_A 3e2j_A Length = 176	Back alignment and structure

>3e4g_A ATP synthase subunit S, mitochondrial; leucine-rich repeat, CF0, hydrogen ION transport, inner membrane, ION transport, membrane, mitochondrion; 0.96A {Bos taurus} PDB: 3e3z_A 3dze_A 3e2j_A Length = 176	Back alignment and structure

>3e4g_A ATP synthase subunit S, mitochondrial; leucine-rich repeat, CF0, hydrogen ION transport, inner membrane, ION transport, membrane, mitochondrion; 0.96A {Bos taurus} PDB: 3e3z_A 3dze_A 3e2j_A Length = 176	Back alignment and structure

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221	Back alignment and structure

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221	Back alignment and structure

>1z7x_W Ribonuclease inhibitor; leucine-rich repeat, enzyme- inhibitor complex, structural genomics, protein structure initiative, PSI, CESG; HET: CIT; 1.95A {Homo sapiens} SCOP: c.10.1.1 PDB: 2q4g_W* 2bex_A 1a4y_A 2bnh_A 1dfj_I Length = 461	Back alignment and structure

>1z7x_W Ribonuclease inhibitor; leucine-rich repeat, enzyme- inhibitor complex, structural genomics, protein structure initiative, PSI, CESG; HET: CIT; 1.95A {Homo sapiens} SCOP: c.10.1.1 PDB: 2q4g_W* 2bex_A 1a4y_A 2bnh_A 1dfj_I Length = 461	Back alignment and structure

>2ca6_A RAN GTPase-activating protein 1; GAP, GTPase activation, hemihedral twinning, leucine-rich repeat protein, LRR, merohedral twinning; 2.2A {Schizosaccharomyces pombe} SCOP: c.10.1.2 PDB: 1k5g_C* 1k5d_C 1yrg_A Length = 386	Back alignment and structure

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Alignment Graph	Length	Definition	Probability
Query		467
2p1m_B		594	Transport inhibitor response 1 protein; F-BOX, leu	100.0
3ogk_B		592	Coronatine-insensitive protein 1; leucine rich rep	100.0
2p1m_B		594	Transport inhibitor response 1 protein; F-BOX, leu	99.97
3ogk_B		592	Coronatine-insensitive protein 1; leucine rich rep	99.96
2ast_B		336	S-phase kinase-associated protein 2; SCF-substrate	99.96
1z7x_W		461	Ribonuclease inhibitor; leucine-rich repeat, enzym	99.94
1z7x_W		461	Ribonuclease inhibitor; leucine-rich repeat, enzym	99.94
2ast_B		336	S-phase kinase-associated protein 2; SCF-substrate	99.84
4fmz_A		347	Internalin; leucine rich repeat, structural genomi	99.84
4fmz_A		347	Internalin; leucine rich repeat, structural genomi	99.8
2ca6_A		386	RAN GTPase-activating protein 1; GAP, GTPase activ	99.77
1o6v_A		466	Internalin A; bacterial infection, extracellular r	99.75
1o6v_A		466	Internalin A; bacterial infection, extracellular r	99.74
3v47_A		455	TOLL-like receptor 5B and variable lymphocyte REC	99.73
2ca6_A		386	RAN GTPase-activating protein 1; GAP, GTPase activ	99.72
3t6q_A		606	CD180 antigen; protein-protein complex, leucine ri	99.71
2id5_A		477	Lingo-1, leucine rich repeat neuronal 6A; CNS-spec	99.71
3t6q_A		606	CD180 antigen; protein-protein complex, leucine ri	99.7
2z7x_B		520	TOLL-like receptor 1, variable lymphocyte recepto;	99.69
3v47_A		455	TOLL-like receptor 5B and variable lymphocyte REC	99.68
3rgz_A		768	Protein brassinosteroid insensitive 1; phytohormon	99.67
3vq2_A		606	TLR4, TOLL-like receptor 4; leucine rich repeat MD	99.67
3o6n_A		390	APL1; leucine-rich repeat, protein binding; HET: N	99.66
3rgz_A		768	Protein brassinosteroid insensitive 1; phytohormon	99.66
2z81_A		549	CD282 antigen, TOLL-like receptor 2, variable lymp	99.66
3vq2_A		606	TLR4, TOLL-like receptor 4; leucine rich repeat MD	99.66
2z63_A		570	TOLL-like receptor 4, variable lymphocyte recepto;	99.66
2id5_A		477	Lingo-1, leucine rich repeat neuronal 6A; CNS-spec	99.65
2z81_A		549	CD282 antigen, TOLL-like receptor 2, variable lymp	99.63
2z63_A		570	TOLL-like receptor 4, variable lymphocyte recepto;	99.63
3goz_A		362	Leucine-rich repeat-containing protein; LEGL7, NES	99.61
1ziw_A		680	TOLL-like receptor 3; innate immunity, immune syst	99.6
4eco_A		636	Uncharacterized protein; leucine-rich repeats, pro	99.6
3e4g_A		176	ATP synthase subunit S, mitochondrial; leucine-ric	99.59
3goz_A		362	Leucine-rich repeat-containing protein; LEGL7, NES	99.59
3bz5_A		457	Internalin-J, INLJ; leucine rich repeat (LRR), cys	99.59
3oja_B		597	Anopheles plasmodium-responsive leucine-rich REPE	99.58
4ecn_A		876	Leucine-rich repeat protein; leucine-rich repeats,	99.58
4ecn_A		876	Leucine-rich repeat protein; leucine-rich repeats,	99.58
1ziw_A		680	TOLL-like receptor 3; innate immunity, immune syst	99.57
3a79_B		562	TLR6, VLRB.59, TOLL-like receptor 6, variable lymp	99.57
3o6n_A		390	APL1; leucine-rich repeat, protein binding; HET: N	99.56
2z7x_B		520	TOLL-like receptor 1, variable lymphocyte recepto;	99.55
4eco_A		636	Uncharacterized protein; leucine-rich repeats, pro	99.55
3bz5_A		457	Internalin-J, INLJ; leucine rich repeat (LRR), cys	99.53
3oja_B		597	Anopheles plasmodium-responsive leucine-rich REPE	99.5
2z80_A		353	TOLL-like receptor 2, variable lymphocyte recepto;	99.5
2z80_A		353	TOLL-like receptor 2, variable lymphocyte recepto;	99.49
3j0a_A		844	TOLL-like receptor 5; membrane protein, leucine-ri	99.48
3j0a_A		844	TOLL-like receptor 5; membrane protein, leucine-ri	99.48
3e4g_A		176	ATP synthase subunit S, mitochondrial; leucine-ric	99.43
3a79_B		562	TLR6, VLRB.59, TOLL-like receptor 6, variable lymp	99.41
3zyj_A		440	Leucine-rich repeat-containing protein 4C; cell ad	99.4
4g8a_A		635	TOLL-like receptor 4; leucine rich repeat MD-2 rel	99.4
1xku_A		330	Decorin; proteoglycan, leucine-rich repeat, struct	99.4
3zyi_A		452	Leucine-rich repeat-containing protein 4; cell adh	99.4
3un9_A		372	NLR family member X1; leucine rich repeat (LRR), a	99.39
2z66_A		306	Variable lymphocyte receptor B, TOLL-like recepto;	99.39
3o53_A		317	Protein LRIM1, AGAP006348-PA; leucine-rich repeat,	99.38
2ft3_A		332	Biglycan; proteoglycan, dimer interface, structura	99.36
4g8a_A		635	TOLL-like receptor 4; leucine rich repeat MD-2 rel	99.36
3un9_A		372	NLR family member X1; leucine rich repeat (LRR), a	99.35
1xku_A		330	Decorin; proteoglycan, leucine-rich repeat, struct	99.35
1ozn_A		285	Reticulon 4 receptor; NOGO receptor, MAD, myelinat	99.33
1ogq_A		313	PGIP-2, polygalacturonase inhibiting protein; inhi	99.33
4fcg_A		328	Uncharacterized protein; structural genomics, PSI-	99.32
2ft3_A		332	Biglycan; proteoglycan, dimer interface, structura	99.32
1ozn_A		285	Reticulon 4 receptor; NOGO receptor, MAD, myelinat	99.29
3oja_A		487	Leucine-rich immune molecule 1; coiled-coil, helix	99.26
3zyj_A		440	Leucine-rich repeat-containing protein 4C; cell ad	99.26
3zyi_A		452	Leucine-rich repeat-containing protein 4; cell adh	99.26
3g06_A		622	SSPH2 (leucine-rich repeat protein); E3 ubiquitin	99.25
2z66_A		306	Variable lymphocyte receptor B, TOLL-like recepto;	99.24
3o53_A		317	Protein LRIM1, AGAP006348-PA; leucine-rich repeat,	99.21
1ogq_A		313	PGIP-2, polygalacturonase inhibiting protein; inhi	99.18
1wwl_A		312	Monocyte differentiation antigen CD14; LPS, immune	99.18
1wwl_A		312	Monocyte differentiation antigen CD14; LPS, immune	99.17
4glp_A		310	Monocyte differentiation antigen CD14; alpha beta	99.15
1h6u_A		308	Internalin H; cell adhesion, leucine rich repeat,	99.11
4ezg_A		197	Putative uncharacterized protein; internalin-A, le	99.1
1jl5_A		454	Outer protein YOPM; leucine-rich repeat, molecular	99.09
4fcg_A		328	Uncharacterized protein; structural genomics, PSI-	99.08
1h6u_A		308	Internalin H; cell adhesion, leucine rich repeat,	99.07
3g06_A		622	SSPH2 (leucine-rich repeat protein); E3 ubiquitin	99.07
2ra8_A		362	Uncharacterized protein Q64V53_bacfr; WGR domain,	99.06
3sb4_A		329	Hypothetical leucine rich repeat protein; LRR, rig	99.05
3oja_A		487	Leucine-rich immune molecule 1; coiled-coil, helix	99.05
1jl5_A		454	Outer protein YOPM; leucine-rich repeat, molecular	99.01
3rfs_A		272	Internalin B, repeat modules, variable lymphocyte	99.0
4glp_A		310	Monocyte differentiation antigen CD14; alpha beta	98.99
1io0_A		185	Tropomodulin; LRR protein, right-handed super-heli	98.96
2z62_A		276	TOLL-like receptor 4, variable lymphocyte recepto;	98.96
2o6q_A		270	Variable lymphocyte receptor A; leucine-rich repea	98.95
4ezg_A		197	Putative uncharacterized protein; internalin-A, le	98.9
1fs1_A		53	SKP2 F-BOX, cyclin A/CDK2-associated P19; F-BOX, L	98.9
2z62_A		276	TOLL-like receptor 4, variable lymphocyte recepto;	98.89
1h6t_A		291	Internalin B; cell adhesion, leucine rich repeat,	98.88
2xwt_C		239	Thyrotropin receptor; signaling protein-immune sys	98.86
1m9s_A		605	Internalin B; cell invasion, GW domains, SH3 domai	98.84
1h6t_A		291	Internalin B; cell adhesion, leucine rich repeat,	98.84
3rfs_A		272	Internalin B, repeat modules, variable lymphocyte	98.82
1io0_A		185	Tropomodulin; LRR protein, right-handed super-heli	98.81
2o6q_A		270	Variable lymphocyte receptor A; leucine-rich repea	98.8
1m9s_A		605	Internalin B; cell invasion, GW domains, SH3 domai	98.78
2ra8_A		362	Uncharacterized protein Q64V53_bacfr; WGR domain,	98.76
1p9a_G		290	Platelet glycoprotein IB alpha chain precursor; pl	98.75
3m19_A		251	Variable lymphocyte receptor A diversity region; a	98.75
2xwt_C		239	Thyrotropin receptor; signaling protein-immune sys	98.72
3sb4_A		329	Hypothetical leucine rich repeat protein; LRR, rig	98.7
2je0_A		149	Acidic leucine-rich nuclear phosphoprotein 32 FAM	98.62
2je0_A		149	Acidic leucine-rich nuclear phosphoprotein 32 FAM	98.58
1p9a_G		290	Platelet glycoprotein IB alpha chain precursor; pl	98.56
2ell_A		168	Acidic leucine-rich nuclear phosphoprotein 32 FAM	98.56
3m19_A		251	Variable lymphocyte receptor A diversity region; a	98.51
1xeu_A		263	Internalin C; cellular invasion, leucine-rich repe	98.49
2ell_A		168	Acidic leucine-rich nuclear phosphoprotein 32 FAM	98.47
1xeu_A		263	Internalin C; cellular invasion, leucine-rich repe	98.47
1pgv_A		197	TMD-1, tropomodulin TMD-1; structural genomics, PS	98.43
4fs7_A		394	Uncharacterized protein; leucine-rich repeats, pro	98.42
2v70_A		220	SLIT-2, SLIT homolog 2 protein N-product; neurogen	98.35
4fdw_A		401	Leucine rich hypothetical protein; putative cell s	98.33
2v9t_B		220	SLIT homolog 2 protein N-product; structural prote	98.31
2o6s_A		208	Variable lymphocyte receptor B; leucine-rich repea	98.3
4ay9_X		350	Follicle-stimulating hormone receptor; hormone-rec	98.19
2xot_A		361	Amphoterin-induced protein 1; cell adhesion, neuro	98.19
1pgv_A		197	TMD-1, tropomodulin TMD-1; structural genomics, PS	98.16
3e6j_A		229	Variable lymphocyte receptor diversity region; var	98.16
1a9n_A		176	U2A', U2A'; complex (nuclear protein/RNA), RNA, sn	98.16
4gt6_A		394	Cell surface protein; leucine rich repeats, putati	98.12
4ay9_X		350	Follicle-stimulating hormone receptor; hormone-rec	98.12
1dce_A		567	Protein (RAB geranylgeranyltransferase alpha subun	98.12
4fs7_A		394	Uncharacterized protein; leucine-rich repeats, pro	98.11
3e6j_A		229	Variable lymphocyte receptor diversity region; var	98.1
2o6s_A		208	Variable lymphocyte receptor B; leucine-rich repea	98.08
4fdw_A		401	Leucine rich hypothetical protein; putative cell s	98.03
1ds9_A		198	Outer arm dynein; leucine-rich repeat, beta-BETA-a	98.0
3cvr_A		571	Invasion plasmid antigen; leucine rich repeat and	97.97
1ds9_A		198	Outer arm dynein; leucine-rich repeat, beta-BETA-a	97.96
1dce_A		567	Protein (RAB geranylgeranyltransferase alpha subun	97.95
1a9n_A		176	U2A', U2A'; complex (nuclear protein/RNA), RNA, sn	97.95
3l2o_B		312	F-box only protein 4; small G protein fold, UBL co	97.9
2wfh_A		193	SLIT homolog 2 protein C-product; developmental pr	97.89
1w8a_A		192	SLIT protein; signaling protein, secreted protein,	97.87
3cvr_A		571	Invasion plasmid antigen; leucine rich repeat and	97.86
2xot_A		361	Amphoterin-induced protein 1; cell adhesion, neuro	97.83
2v70_A		220	SLIT-2, SLIT homolog 2 protein N-product; neurogen	97.81
2v9t_B		220	SLIT homolog 2 protein N-product; structural prote	97.76
2e31_A		297	FBS1, F-box only protein 2; ubiquitin, SCF, ubiqui	97.76
4gt6_A		394	Cell surface protein; leucine rich repeats, putati	97.71
2o6r_A		177	Variable lymphocyte receptor B; leucine-rich repea	97.67
4h09_A		379	Hypothetical leucine rich repeat protein; two LRR_	97.59
2o6r_A		177	Variable lymphocyte receptor B; leucine-rich repea	97.45
3g39_A		170	Variable lymphocyte receptor VLRB.2D; antibody, X-	97.39
2r9u_A		174	Variable lymphocyte receptor; adaptive immunity, V	97.25
2wfh_A		193	SLIT homolog 2 protein C-product; developmental pr	97.17
3v7d_B		464	Cell division control protein 4; WD 40 domain, pho	97.14
4b8c_D		727	Glucose-repressible alcohol dehydrogenase transcr	97.01
4h09_A		379	Hypothetical leucine rich repeat protein; two LRR_	97.0
1p22_A		435	F-BOX/WD-repeat protein 1A; ubiquitination, degrad	96.96
1w8a_A		192	SLIT protein; signaling protein, secreted protein,	96.95
2ovr_B		445	FBW7, F-BOX/WD repeat protein 7, F-box PROT; WD40	96.95
3g39_A		170	Variable lymphocyte receptor VLRB.2D; antibody, X-	96.72
4b8c_D		727	Glucose-repressible alcohol dehydrogenase transcr	96.68
2r9u_A		174	Variable lymphocyte receptor; adaptive immunity, V	96.67
3rw6_A		267	Nuclear RNA export factor 1; retroviral constituti	96.55
2ifg_A		347	High affinity nerve growth factor receptor; TRK, T	96.13
3rw6_A		267	Nuclear RNA export factor 1; retroviral constituti	95.87
2ifg_A		347	High affinity nerve growth factor receptor; TRK, T	95.26

>2p1m_B Transport inhibitor response 1 protein; F-BOX, leucine rich repeat, signaling protein; HET: IHP; 1.80A {Arabidopsis thaliana} PDB: 2p1n_B* 2p1o_B* 2p1p_B* 2p1q_B* 3c6n_B* 3c6o_B* 3c6p_B*	Back alignment and structure

Probab=100.00  E-value=2.6e-39  Score=327.51  Aligned_cols=446  Identities=20%  Similarity=0.251  Sum_probs=303.1

Q ss_pred             CCCCchHHHHHHHccCCCcchhhHHHHhhhHHHhhhhhccceEEeccCCCCchhHHHHHHhhCCCccEEEeeccccccc-
Q 012255            1 MDTLPDHLVWEILGRIKKTVDRNSASLACKRFYEVDNEQRLSLRVGCGLDPVNEALTSLCNRFGNLTKVEISYAGWMSR-   79 (467)
Q Consensus         1 i~~LP~ell~~If~~L~~~~~~~~~~~vck~w~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~L~~L~l~~~~~~~~-   79 (467)
                      +++||+||+.+||+||++.+++.+++.|||+|+.+....+..+.+.......   ...+..+|++|++|++++...... 
T Consensus         6 ~~~LPdevL~~If~~L~~~~d~~~~s~vck~W~~~~~~~~~~l~~~~~~~~~---~~~~~~~~~~L~~L~L~~~~~~~~~   82 (594)
T 2p1m_B            6 ALSFPEEVLEHVFSFIQLDKDRNSVSLVCKSWYEIERWCRRKVFIGNCYAVS---PATVIRRFPKVRSVELKGKPHFADF   82 (594)
T ss_dssp             ----CHHHHHHHHHTCCCHHHHHHHHTSCHHHHHHHHHHCCEEEESSTTSSC---HHHHHHHCTTCCEEEEECSCGGGGG
T ss_pred             hhhCCHHHHHHHHhhcCCchhHHHHHHHHHHHHHhhhhhceEEeeccccccC---HHHHHhhCCCceEEeccCCCchhhc
Confidence            4789999999999999768999999999999999977676776665432221   236778999999999986432111 


Q ss_pred             -----CCCCCCHHHHHHHHhhCCCCCEEeecCCCCCChHhHHHHh-cCCCCceeeccCCCCCChhhHHHHHhcCCCCcEE
Q 012255           80 -----LGKQLDDQGLLILSNSCPYLTDLTLNYCTFITDVGLCYLA-SCLNLSTLKLKFTTRITGCGILSVVVGCKNLTVL  153 (467)
Q Consensus        80 -----~~~~i~~~~l~~l~~~~~~L~~L~l~~~~~~~~~~l~~l~-~~~~L~~L~l~~~~~~~~~~l~~~~~~~~~L~~L  153 (467)
                           .+......++..+...+++|++|+++++ .+++..+..+. .+++|++|++.+|..+++.++..+...|++|++|
T Consensus        83 ~l~~~~~~~~~~~~l~~l~~~~~~L~~L~L~~~-~~~~~~~~~l~~~~~~L~~L~L~~~~~~~~~~l~~~~~~~~~L~~L  161 (594)
T 2p1m_B           83 NLVPDGWGGYVYPWIEAMSSSYTWLEEIRLKRM-VVTDDCLELIAKSFKNFKVLVLSSCEGFSTDGLAAIAATCRNLKEL  161 (594)
T ss_dssp             TCSCTTSCCBCHHHHHHHHHHCTTCCEEEEESC-BCCHHHHHHHHHHCTTCCEEEEESCEEEEHHHHHHHHHHCTTCCEE
T ss_pred             ccccccccchhhHHHHHHHHhCCCCCeEEeeCc-EEcHHHHHHHHHhCCCCcEEeCCCcCCCCHHHHHHHHHhCCCCCEE
Confidence                 1112334567777788999999999998 68888888887 7999999999998788887888888899999999


Q ss_pred             eccCCcccCchH---HHHHhcccccccccccccCC-CCChhhHHhhccCcccccccccccccccc-------------cc
Q 012255          154 HLIRCLNVNSVE---WLEYLGKLERLEDLLIKNCR-AIGEGDLIKLGPCWRKLKRLQFEVDVNYR-------------YM  216 (467)
Q Consensus       154 ~l~~~~~~~~~~---~~~~~~~~~~L~~L~l~~~~-~~~~~~~~~~~~~~~~L~~L~l~~~~~~~-------------~~  216 (467)
                      ++.+|. +++..   +......+++|++|++..+. .++...+..+...+++|+.|.+..+....             ..
T Consensus       162 ~L~~~~-i~~~~~~~l~~~~~~~~~L~~L~l~~~~~~~~~~~l~~l~~~~~~L~~L~L~~~~~~~~l~~~~~~~~~L~~L  240 (594)
T 2p1m_B          162 DLRESD-VDDVSGHWLSHFPDTYTSLVSLNISCLASEVSFSALERLVTRCPNLKSLKLNRAVPLEKLATLLQRAPQLEEL  240 (594)
T ss_dssp             ECTTCE-EECCCGGGGGGSCTTCCCCCEEECTTCCSCCCHHHHHHHHHHCTTCCEEECCTTSCHHHHHHHHHHCTTCSEE
T ss_pred             eCcCCc-cCCcchHHHHHHhhcCCcCcEEEecccCCcCCHHHHHHHHHhCCCCcEEecCCCCcHHHHHHHHhcCCcceEc
Confidence            999884 43221   22223356788888887775 45556666666667777777776431100             00


Q ss_pred             c------------------------------chhhhhhhhhhhcccCCCCcceeeccccCccCchhHHHHHhcCCCCcEE
Q 012255          217 K------------------------------VYDRLAVDRWQRQRVPCENMVELSLKNCIISPGRGLACVLGKCRNLEKI  266 (467)
Q Consensus       217 ~------------------------------~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~l~~l~~~~~~L~~L  266 (467)
                      +                              .........++.....+++|++|+++++. +++..+..++..+++|++|
T Consensus       241 ~l~~~~~~~~~~~~~~l~~~l~~~~~L~~Ls~~~~~~~~~l~~~~~~~~~L~~L~L~~~~-l~~~~l~~~~~~~~~L~~L  319 (594)
T 2p1m_B          241 GTGGYTAEVRPDVYSGLSVALSGCKELRCLSGFWDAVPAYLPAVYSVCSRLTTLNLSYAT-VQSYDLVKLLCQCPKLQRL  319 (594)
T ss_dssp             ECSBCCCCCCHHHHHHHHHHHHTCTTCCEEECCBTCCGGGGGGGHHHHTTCCEEECTTCC-CCHHHHHHHHTTCTTCCEE
T ss_pred             ccccccCccchhhHHHHHHHHhcCCCcccccCCcccchhhHHHHHHhhCCCCEEEccCCC-CCHHHHHHHHhcCCCcCEE
Confidence            0                              00000000111111246788888888877 6666677777788888888


Q ss_pred             EcccCcccchhHHHHHHHhCCCCCeeeeccC--------CCCCcccc-------------ccCCCCCCHHHHHHHHhcCC
Q 012255          267 HLDMCVGVRDSDIINMAQTSSKLRSISLRVP--------SDFSLPIL-------------MSNPLRLTDESLKALADNCR  325 (467)
Q Consensus       267 ~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~--------~~~~~~~~-------------~~~~~~~~~~~l~~l~~~~~  325 (467)
                      .+.++  +++.++..+...+++|++|++.+|        ..+.+.++             ...+..+++.++..+...+|
T Consensus       320 ~l~~~--~~~~~l~~l~~~~~~L~~L~L~~~~~~g~~~~~~l~~~~l~~l~~~~~~L~~L~~~~~~l~~~~~~~l~~~~~  397 (594)
T 2p1m_B          320 WVLDY--IEDAGLEVLASTCKDLRELRVFPSEPFVMEPNVALTEQGLVSVSMGCPKLESVLYFCRQMTNAALITIARNRP  397 (594)
T ss_dssp             EEEGG--GHHHHHHHHHHHCTTCCEEEEECSCTTCSSCSSCCCHHHHHHHHHHCTTCCEEEEEESCCCHHHHHHHHHHCT
T ss_pred             eCcCc--cCHHHHHHHHHhCCCCCEEEEecCcccccccCCCCCHHHHHHHHHhchhHHHHHHhcCCcCHHHHHHHHhhCC
Confidence            88876  556666667767888888887432        22221111             11234566666666665677


Q ss_pred             CCCeEEecccCCCCCcccccc----HHHHHHHHHhCC-CcEeeccccccccHHHHHHHHh-CCCCCEEeecCCCCcCHHH
Q 012255          326 MLESVRISFSDGEFPSISSFT----LDGILTLIQKCP-VRELSLDYVYSFNDVGMEALCS-AHYLEILELARCQEISDEG  399 (467)
Q Consensus       326 ~L~~L~l~~~~~~~~~~~~~~----~~~~~~l~~~~~-L~~L~l~~~~~~~~~~~~~l~~-~~~L~~L~l~~c~~it~~~  399 (467)
                      +|+.|++..++..  .+..++    +.++..+...++ |+.|++++  .+++.++..+.. +++|+.|++++| .+++.+
T Consensus       398 ~L~~L~L~~~~~~--~~~~l~~~~~~~~~~~l~~~~~~L~~L~L~~--~l~~~~~~~l~~~~~~L~~L~L~~~-~i~~~~  472 (594)
T 2p1m_B          398 NMTRFRLCIIEPK--APDYLTLEPLDIGFGAIVEHCKDLRRLSLSG--LLTDKVFEYIGTYAKKMEMLSVAFA-GDSDLG  472 (594)
T ss_dssp             TCCEEEEEESSTT--CCCTTTCCCTHHHHHHHHHHCTTCCEEECCS--SCCHHHHHHHHHHCTTCCEEEEESC-CSSHHH
T ss_pred             CcceeEeecccCC--CcccccCCchhhHHHHHHhhCCCccEEeecC--cccHHHHHHHHHhchhccEeeccCC-CCcHHH
Confidence            7777777611000  024555    567777777777 77777765  677777777775 788888888875 477877


Q ss_pred             HHHh-cCCCCCCEEeecCCCCCCccchHhhhc-CCCCCeeccCCCCCCCHHHHHHHHhhccccc
Q 012255          400 LQLA-CQFPHLSILRLRKCLGVTDDGLKPLVG-SHKLDLLAVEDCPQVSERGVQGAARSVSFRQ  461 (467)
Q Consensus       400 ~~~l-~~~~~L~~L~l~~c~~it~~~~~~l~~-~~~L~~L~l~~c~~~~~~~~~~l~~~~~~~~  461 (467)
                      +..+ .++++|+.|++++|. +++.++..+.. +++|+.|++++|+ ++++++..+++.++.++
T Consensus       473 ~~~l~~~~~~L~~L~L~~n~-~~~~~~~~~~~~l~~L~~L~l~~~~-~~~~~~~~l~~~lp~l~  534 (594)
T 2p1m_B          473 MHHVLSGCDSLRKLEIRDCP-FGDKALLANASKLETMRSLWMSSCS-VSFGACKLLGQKMPKLN  534 (594)
T ss_dssp             HHHHHHHCTTCCEEEEESCS-CCHHHHHHTGGGGGGSSEEEEESSC-CBHHHHHHHHHHCTTEE
T ss_pred             HHHHHhcCCCcCEEECcCCC-CcHHHHHHHHHhCCCCCEEeeeCCC-CCHHHHHHHHHhCCCCE
Confidence            7776 368888888888876 57777776665 8888888888887 58888888887777653

PyMOL of 2p1m

>3ogk_B Coronatine-insensitive protein 1; leucine rich repeat, ubiquitin ligase, SCF, protein binding; HET: OGK; 2.80A {Arabidopsis thaliana} PDB: 3ogl_B* 3ogm_B*	Back alignment and structure

>2p1m_B Transport inhibitor response 1 protein; F-BOX, leucine rich repeat, signaling protein; HET: IHP; 1.80A {Arabidopsis thaliana} PDB: 2p1n_B* 2p1o_B* 2p1p_B* 2p1q_B* 3c6n_B* 3c6o_B* 3c6p_B*	Back alignment and structure

>3ogk_B Coronatine-insensitive protein 1; leucine rich repeat, ubiquitin ligase, SCF, protein binding; HET: OGK; 2.80A {Arabidopsis thaliana} PDB: 3ogl_B* 3ogm_B*	Back alignment and structure

>2ast_B S-phase kinase-associated protein 2; SCF-substrate complex, LRR, cell cycle, protein turnover COM ligase-ligase inhibitor complex; HET: TPO; 2.30A {Homo sapiens} SCOP: a.158.1.1 c.10.1.3 PDB: 2ass_B 1fqv_A* 1fs2_A	Back alignment and structure

>1z7x_W Ribonuclease inhibitor; leucine-rich repeat, enzyme- inhibitor complex, structural genomics, protein structure initiative, PSI, CESG; HET: CIT; 1.95A {Homo sapiens} SCOP: c.10.1.1 PDB: 2q4g_W* 2bex_A 1a4y_A 2bnh_A 1dfj_I	Back alignment and structure

>1z7x_W Ribonuclease inhibitor; leucine-rich repeat, enzyme- inhibitor complex, structural genomics, protein structure initiative, PSI, CESG; HET: CIT; 1.95A {Homo sapiens} SCOP: c.10.1.1 PDB: 2q4g_W* 2bex_A 1a4y_A 2bnh_A 1dfj_I	Back alignment and structure

>2ast_B S-phase kinase-associated protein 2; SCF-substrate complex, LRR, cell cycle, protein turnover COM ligase-ligase inhibitor complex; HET: TPO; 2.30A {Homo sapiens} SCOP: a.158.1.1 c.10.1.3 PDB: 2ass_B 1fqv_A* 1fs2_A	Back alignment and structure

>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B}	Back alignment and structure

>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B}	Back alignment and structure

>2ca6_A RAN GTPase-activating protein 1; GAP, GTPase activation, hemihedral twinning, leucine-rich repeat protein, LRR, merohedral twinning; 2.2A {Schizosaccharomyces pombe} SCOP: c.10.1.2 PDB: 1k5g_C* 1k5d_C 1yrg_A	Back alignment and structure

>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A	Back alignment and structure

>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A	Back alignment and structure

>3v47_A TOLL-like receptor 5B and variable lymphocyte REC chimeric protein; innate immunity, leucine-rich repeat, innate immune receptor system; HET: NAG; 2.47A {Danio rerio} PDB: 3v44_A*	Back alignment and structure

>2ca6_A RAN GTPase-activating protein 1; GAP, GTPase activation, hemihedral twinning, leucine-rich repeat protein, LRR, merohedral twinning; 2.2A {Schizosaccharomyces pombe} SCOP: c.10.1.2 PDB: 1k5g_C* 1k5d_C 1yrg_A	Back alignment and structure

>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A*	Back alignment and structure

>2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens}	Back alignment and structure

>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A*	Back alignment and structure

>2z7x_B TOLL-like receptor 1, variable lymphocyte recepto; TLR2, TLR1, lipopeptide, innate immunity, glycoPro immune response, inflammatory response, leucine-rich repeat membrane, receptor; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens}	Back alignment and structure

>3v47_A TOLL-like receptor 5B and variable lymphocyte REC chimeric protein; innate immunity, leucine-rich repeat, innate immune receptor system; HET: NAG; 2.47A {Danio rerio} PDB: 3v44_A*	Back alignment and structure

>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A*	Back alignment and structure

>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A*	Back alignment and structure

>3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae}	Back alignment and structure

>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A*	Back alignment and structure

>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A*	Back alignment and structure

>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A*	Back alignment and structure

>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens}	Back alignment and structure

>2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens}	Back alignment and structure

>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A*	Back alignment and structure

>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens}	Back alignment and structure

>3goz_A Leucine-rich repeat-containing protein; LEGL7, NESG, LGR148, structural genomics, PSI-2, protein structure initiative; 2.10A {Legionella pneumophila subsp}	Back alignment and structure

>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A*	Back alignment and structure

>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697}	Back alignment and structure

>3e4g_A ATP synthase subunit S, mitochondrial; leucine-rich repeat, CF0, hydrogen ION transport, inner membrane, ION transport, membrane, mitochondrion; 0.96A {Bos taurus} PDB: 3e3z_A 3dze_A 3e2j_A	Back alignment and structure

>3goz_A Leucine-rich repeat-containing protein; LEGL7, NESG, LGR148, structural genomics, PSI-2, protein structure initiative; 2.10A {Legionella pneumophila subsp}	Back alignment and structure

>3bz5_A Internalin-J, INLJ; leucine rich repeat (LRR), cysteine ladder, asparagine ladder, virulence factor, solenoid, cell WALL; 2.70A {Listeria monocytogenes}	Back alignment and structure

>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}	Back alignment and structure

>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron}	Back alignment and structure

>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron}	Back alignment and structure

>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A*	Back alignment and structure

>3a79_B TLR6, VLRB.59, TOLL-like receptor 6, variable lymphocyte recepto; diacyl lipopeptide, innate immunity, Leu repeat, cell membrane, cytoplasmic vesicle; HET: PXS NAG BMA NDG; 2.90A {Mus musculus}	Back alignment and structure

>3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae}	Back alignment and structure

>2z7x_B TOLL-like receptor 1, variable lymphocyte recepto; TLR2, TLR1, lipopeptide, innate immunity, glycoPro immune response, inflammatory response, leucine-rich repeat membrane, receptor; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens}	Back alignment and structure

>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697}	Back alignment and structure

>3bz5_A Internalin-J, INLJ; leucine rich repeat (LRR), cysteine ladder, asparagine ladder, virulence factor, solenoid, cell WALL; 2.70A {Listeria monocytogenes}	Back alignment and structure

>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}	Back alignment and structure

>2z80_A TOLL-like receptor 2, variable lymphocyte recepto; TLR2, lipopeptide, innate immunity, glycoprotein, immune RES inflammatory response; HET: NAG; 1.80A {Homo sapiens}	Back alignment and structure

>2z80_A TOLL-like receptor 2, variable lymphocyte recepto; TLR2, lipopeptide, innate immunity, glycoprotein, immune RES inflammatory response; HET: NAG; 1.80A {Homo sapiens}	Back alignment and structure

>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens}	Back alignment and structure

>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens}	Back alignment and structure

>3e4g_A ATP synthase subunit S, mitochondrial; leucine-rich repeat, CF0, hydrogen ION transport, inner membrane, ION transport, membrane, mitochondrion; 0.96A {Bos taurus} PDB: 3e3z_A 3dze_A 3e2j_A	Back alignment and structure

>3a79_B TLR6, VLRB.59, TOLL-like receptor 6, variable lymphocyte recepto; diacyl lipopeptide, innate immunity, Leu repeat, cell membrane, cytoplasmic vesicle; HET: PXS NAG BMA NDG; 2.90A {Mus musculus}	Back alignment and structure

>3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens}	Back alignment and structure

>4g8a_A TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, immune system; HET: NAG LP4 LP5 DAO MYR KDO; 2.40A {Homo sapiens} PDB: 3fxi_A*	Back alignment and structure

>1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein; HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A* 1xcd_A*	Back alignment and structure

>3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A	Back alignment and structure

>3un9_A NLR family member X1; leucine rich repeat (LRR), antiviral signaling, MAVS, TRAF6, UQCRC2, immune system; 2.65A {Homo sapiens}	Back alignment and structure

>2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like receptor, MD-2, LPS, leucine-rich repeat, glycoprotein, immune response; HET: NAG BMA FUL; 1.90A {Eptatretus burgeri}	Back alignment and structure

>3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae}	Back alignment and structure

>2ft3_A Biglycan; proteoglycan, dimer interface, structural protein, signaling; HET: NAG FLC; 3.40A {Bos taurus}	Back alignment and structure

>4g8a_A TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, immune system; HET: NAG LP4 LP5 DAO MYR KDO; 2.40A {Homo sapiens} PDB: 3fxi_A*	Back alignment and structure

>3un9_A NLR family member X1; leucine rich repeat (LRR), antiviral signaling, MAVS, TRAF6, UQCRC2, immune system; 2.65A {Homo sapiens}	Back alignment and structure

>1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein; HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A* 1xcd_A*	Back alignment and structure

>1ozn_A Reticulon 4 receptor; NOGO receptor, MAD, myelination inhibition, OMGP, MAG, NOGO- signal transduction, neuronal regeneration, ligand binding; HET: NDG MAN NAG BMA; 1.52A {Homo sapiens} SCOP: c.10.2.7 PDB: 1p8t_A* 3kj4_A*	Back alignment and structure

>1ogq_A PGIP-2, polygalacturonase inhibiting protein; inhibitor; HET: NAG; 1.7A {Phaseolus vulgaris} SCOP: c.10.2.8	Back alignment and structure

>4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV}	Back alignment and structure

>2ft3_A Biglycan; proteoglycan, dimer interface, structural protein, signaling; HET: NAG FLC; 3.40A {Bos taurus}	Back alignment and structure

>1ozn_A Reticulon 4 receptor; NOGO receptor, MAD, myelination inhibition, OMGP, MAG, NOGO- signal transduction, neuronal regeneration, ligand binding; HET: NDG MAN NAG BMA; 1.52A {Homo sapiens} SCOP: c.10.2.7 PDB: 1p8t_A* 3kj4_A*	Back alignment and structure

>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}	Back alignment and structure

>3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens}	Back alignment and structure

>3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A	Back alignment and structure

>3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium}	Back alignment and structure

>2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like receptor, MD-2, LPS, leucine-rich repeat, glycoprotein, immune response; HET: NAG BMA FUL; 1.90A {Eptatretus burgeri}	Back alignment and structure

>3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae}	Back alignment and structure

>1ogq_A PGIP-2, polygalacturonase inhibiting protein; inhibitor; HET: NAG; 1.7A {Phaseolus vulgaris} SCOP: c.10.2.8	Back alignment and structure

>1wwl_A Monocyte differentiation antigen CD14; LPS, immune system; HET: NAG; 2.50A {Mus musculus}	Back alignment and structure

>1wwl_A Monocyte differentiation antigen CD14; LPS, immune system; HET: NAG; 2.50A {Mus musculus}	Back alignment and structure

>4glp_A Monocyte differentiation antigen CD14; alpha beta BENT solenoid, LRR, lipopolysaccharide, serum, CD leucine-rich repeat, pattern recognition; 4.00A {Homo sapiens}	Back alignment and structure

>1h6u_A Internalin H; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.8A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1	Back alignment and structure

>4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes}	Back alignment and structure

>1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A	Back alignment and structure

>4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV}	Back alignment and structure

>1h6u_A Internalin H; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.8A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1	Back alignment and structure

>3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium}	Back alignment and structure

>2ra8_A Uncharacterized protein Q64V53_bacfr; WGR domain, LRR domain, leucine rich repeats, BFR43, structural genomics, PSI-2; 1.95A {Bacteroides fragilis}	Back alignment and structure

>3sb4_A Hypothetical leucine rich repeat protein; LRR, right-handed beta-alpha superhelix, leucine-rich repeat structural genomics; HET: MSE PG4; 1.99A {Bacteroides thetaiotaomicron}	Back alignment and structure

>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}	Back alignment and structure

>1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A	Back alignment and structure

>3rfs_A Internalin B, repeat modules, variable lymphocyte B; LRR, protein binding, plasma; 1.70A {Listeria monocytogenes} PDB: 3rfj_A	Back alignment and structure

>4glp_A Monocyte differentiation antigen CD14; alpha beta BENT solenoid, LRR, lipopolysaccharide, serum, CD leucine-rich repeat, pattern recognition; 4.00A {Homo sapiens}	Back alignment and structure

>1io0_A Tropomodulin; LRR protein, right-handed super-helix, protein binding; 1.45A {Gallus gallus} SCOP: c.10.1.1	Back alignment and structure

>2z62_A TOLL-like receptor 4, variable lymphocyte recepto; TLR, VLR hybrid, MD-2, LPS, glycoprotein response, inflammatory response, innate immunity; HET: NAG FUL BMA; 1.70A {Homo sapiens} PDB: 2z65_A* 3ul8_A* 3ula_A* 3ul7_A*	Back alignment and structure

>2o6q_A Variable lymphocyte receptor A; leucine-rich repeat protein, LRR, immune system; 2.50A {Eptatretus burgeri}	Back alignment and structure

>4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes}	Back alignment and structure

>1fs1_A SKP2 F-BOX, cyclin A/CDK2-associated P19; F-BOX, LRR, leucine-rich repeat, SCF, ubiquitin, ubiquitin protein ligase; 1.80A {Homo sapiens} SCOP: a.158.1.1 PDB: 1ldk_E	Back alignment and structure

>2z62_A TOLL-like receptor 4, variable lymphocyte recepto; TLR, VLR hybrid, MD-2, LPS, glycoprotein response, inflammatory response, innate immunity; HET: NAG FUL BMA; 1.70A {Homo sapiens} PDB: 2z65_A* 3ul8_A* 3ula_A* 3ul7_A*	Back alignment and structure

>1h6t_A Internalin B; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.6A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 2wqu_A 2uzy_A 2uzx_A 2wqv_A* 2wqw_A 2wqx_A 1d0b_A 1otn_A 1oto_A 1otm_A	Back alignment and structure

>2xwt_C Thyrotropin receptor; signaling protein-immune system complex, GPCR, graves' disea autoimmunity, receptor-autoantibody complex; HET: NAG BMA MAN; 1.90A {Homo sapiens} PDB: 3g04_C*	Back alignment and structure

>1m9s_A Internalin B; cell invasion, GW domains, SH3 domains, signaling protein; 2.65A {Listeria monocytogenes} SCOP: b.1.18.15 b.34.11.1 b.34.11.1 b.34.11.1 c.10.2.1 PDB: 2y5q_A	Back alignment and structure

>1h6t_A Internalin B; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.6A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 2wqu_A 2uzy_A 2uzx_A 2wqv_A* 2wqw_A 2wqx_A 1d0b_A 1otn_A 1oto_A 1otm_A	Back alignment and structure

>3rfs_A Internalin B, repeat modules, variable lymphocyte B; LRR, protein binding, plasma; 1.70A {Listeria monocytogenes} PDB: 3rfj_A	Back alignment and structure

>1io0_A Tropomodulin; LRR protein, right-handed super-helix, protein binding; 1.45A {Gallus gallus} SCOP: c.10.1.1	Back alignment and structure

>2o6q_A Variable lymphocyte receptor A; leucine-rich repeat protein, LRR, immune system; 2.50A {Eptatretus burgeri}	Back alignment and structure

>1m9s_A Internalin B; cell invasion, GW domains, SH3 domains, signaling protein; 2.65A {Listeria monocytogenes} SCOP: b.1.18.15 b.34.11.1 b.34.11.1 b.34.11.1 c.10.2.1 PDB: 2y5q_A	Back alignment and structure

>2ra8_A Uncharacterized protein Q64V53_bacfr; WGR domain, LRR domain, leucine rich repeats, BFR43, structural genomics, PSI-2; 1.95A {Bacteroides fragilis}	Back alignment and structure

>1p9a_G Platelet glycoprotein IB alpha chain precursor; platelet receptors, glycocalicin, leucine rich repeats, BLOO clotting; HET: NAG BMA; 1.70A {Homo sapiens} SCOP: c.10.2.7 PDB: 1ook_G* 1qyy_A* 3pmh_G* 1m0z_A 1m10_B 1sq0_B 1gwb_A* 1p8v_A* 1u0n_D 3p72_A	Back alignment and structure

>3m19_A Variable lymphocyte receptor A diversity region; adaptive immunity, antibody, T cell, leucine-rich repeat, immune system; 1.70A {Petromyzon marinus} PDB: 3m18_A	Back alignment and structure

>2xwt_C Thyrotropin receptor; signaling protein-immune system complex, GPCR, graves' disea autoimmunity, receptor-autoantibody complex; HET: NAG BMA MAN; 1.90A {Homo sapiens} PDB: 3g04_C*	Back alignment and structure

>3sb4_A Hypothetical leucine rich repeat protein; LRR, right-handed beta-alpha superhelix, leucine-rich repeat structural genomics; HET: MSE PG4; 1.99A {Bacteroides thetaiotaomicron}	Back alignment and structure

>2je0_A Acidic leucine-rich nuclear phosphoprotein 32 FAM member A; nuclear protein; 2.40A {Homo sapiens} PDB: 2je1_A	Back alignment and structure

>2je0_A Acidic leucine-rich nuclear phosphoprotein 32 FAM member A; nuclear protein; 2.40A {Homo sapiens} PDB: 2je1_A	Back alignment and structure

>1p9a_G Platelet glycoprotein IB alpha chain precursor; platelet receptors, glycocalicin, leucine rich repeats, BLOO clotting; HET: NAG BMA; 1.70A {Homo sapiens} SCOP: c.10.2.7 PDB: 1ook_G* 1qyy_A* 3pmh_G* 1m0z_A 1m10_B 1sq0_B 1gwb_A* 1p8v_A* 1u0n_D 3p72_A	Back alignment and structure

>2ell_A Acidic leucine-rich nuclear phosphoprotein 32 FAM B; phapi2 protein, silver-stainable protein SSP29, acidic prote in leucines, structural genomics; NMR {Homo sapiens} PDB: 2rr6_A 2jqd_A	Back alignment and structure

>3m19_A Variable lymphocyte receptor A diversity region; adaptive immunity, antibody, T cell, leucine-rich repeat, immune system; 1.70A {Petromyzon marinus} PDB: 3m18_A	Back alignment and structure

>1xeu_A Internalin C; cellular invasion, leucine-rich repeat, cell invasion; 2.05A {Listeria monocytogenes}	Back alignment and structure

>2ell_A Acidic leucine-rich nuclear phosphoprotein 32 FAM B; phapi2 protein, silver-stainable protein SSP29, acidic prote in leucines, structural genomics; NMR {Homo sapiens} PDB: 2rr6_A 2jqd_A	Back alignment and structure

>1xeu_A Internalin C; cellular invasion, leucine-rich repeat, cell invasion; 2.05A {Listeria monocytogenes}	Back alignment and structure

>1pgv_A TMD-1, tropomodulin TMD-1; structural genomics, PSI, protein structure initiative, southeast collaboratory for structural genomics secsg; 1.80A {Caenorhabditis elegans} SCOP: c.10.1.1	Back alignment and structure

>4fs7_A Uncharacterized protein; leucine-rich repeats, protein binding, extracellular protein structural genomics; HET: MSE; 1.19A {Bacteroides ovatus}	Back alignment and structure

>2v70_A SLIT-2, SLIT homolog 2 protein N-product; neurogenesis, glycoprotein, secreted, chemotaxis, LRR structural protein, differentiation; HET: NAG; 3.01A {Homo sapiens}	Back alignment and structure

>4fdw_A Leucine rich hypothetical protein; putative cell surface protein, BIG3 domain, LRR domain, STRU genomics; 2.05A {Bacteroides ovatus} PDB: 4fd0_A	Back alignment and structure

>2v9t_B SLIT homolog 2 protein N-product; structural protein-receptor complex, developmental protein, domain, roundabout, chemotaxis, LRR domain; 1.70A {Homo sapiens} PDB: 2v9s_A	Back alignment and structure

>2o6s_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 1.50A {Eptatretus burgeri}	Back alignment and structure

>4ay9_X Follicle-stimulating hormone receptor; hormone-receptor complex, leucine-rich repeats, LRR, GPCR; HET: TYS NAG; 2.50A {Homo sapiens} PDB: 1xwd_C*	Back alignment and structure

>2xot_A Amphoterin-induced protein 1; cell adhesion, neuronal protein, neurite growth regulation; HET: NAG BMA; 2.00A {Mus musculus}	Back alignment and structure

>1pgv_A TMD-1, tropomodulin TMD-1; structural genomics, PSI, protein structure initiative, southeast collaboratory for structural genomics secsg; 1.80A {Caenorhabditis elegans} SCOP: c.10.1.1	Back alignment and structure

>3e6j_A Variable lymphocyte receptor diversity region; variable lymphocyte receptors, VLR, leucine-rich repeat, LRR adaptive immunity, immune system; HET: DR2; 1.67A {Petromyzon marinus}	Back alignment and structure

>1a9n_A U2A', U2A'; complex (nuclear protein/RNA), RNA, snRNP, ribonucleoprotein, RNA binding protein/RNA complex; 2.38A {Homo sapiens} SCOP: c.10.2.4	Back alignment and structure

>4gt6_A Cell surface protein; leucine rich repeats, putative protein binding, extracellula protein, structural genomics; HET: MSE; 1.80A {Faecalibacterium prausnitzii a2-165}	Back alignment and structure

>4ay9_X Follicle-stimulating hormone receptor; hormone-receptor complex, leucine-rich repeats, LRR, GPCR; HET: TYS NAG; 2.50A {Homo sapiens} PDB: 1xwd_C*	Back alignment and structure

>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A*	Back alignment and structure

>4fs7_A Uncharacterized protein; leucine-rich repeats, protein binding, extracellular protein structural genomics; HET: MSE; 1.19A {Bacteroides ovatus}	Back alignment and structure

>3e6j_A Variable lymphocyte receptor diversity region; variable lymphocyte receptors, VLR, leucine-rich repeat, LRR adaptive immunity, immune system; HET: DR2; 1.67A {Petromyzon marinus}	Back alignment and structure

>2o6s_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 1.50A {Eptatretus burgeri}	Back alignment and structure

>4fdw_A Leucine rich hypothetical protein; putative cell surface protein, BIG3 domain, LRR domain, STRU genomics; 2.05A {Bacteroides ovatus} PDB: 4fd0_A	Back alignment and structure

>1ds9_A Outer arm dynein; leucine-rich repeat, beta-BETA-alpha cylinder, flagella, contractIle protein; NMR {Chlamydomonas reinhardtii} SCOP: c.10.3.1 PDB: 1m9l_A	Back alignment and structure

>3cvr_A Invasion plasmid antigen; leucine rich repeat and alpha fold, ligase; 2.80A {Shigella flexneri 2A}	Back alignment and structure

>1ds9_A Outer arm dynein; leucine-rich repeat, beta-BETA-alpha cylinder, flagella, contractIle protein; NMR {Chlamydomonas reinhardtii} SCOP: c.10.3.1 PDB: 1m9l_A	Back alignment and structure

>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A*	Back alignment and structure

>1a9n_A U2A', U2A'; complex (nuclear protein/RNA), RNA, snRNP, ribonucleoprotein, RNA binding protein/RNA complex; 2.38A {Homo sapiens} SCOP: c.10.2.4	Back alignment and structure

>3l2o_B F-box only protein 4; small G protein fold, UBL conjugation pathway, ubiquitin Pro ligase, protein binding-cell cycle complex; 2.80A {Homo sapiens}	Back alignment and structure

>2wfh_A SLIT homolog 2 protein C-product; developmental protein, neurogenesis, splicing, glycoprotein, leucine-rich repeat, disulfide bond, differentiation; 1.80A {Homo sapiens}	Back alignment and structure

>1w8a_A SLIT protein; signaling protein, secreted protein, AXON guidance, leucine-rich repeat glycoprotein, EGF-like domain, signal protein; 2.8A {Drosophila melanogaster} SCOP: c.10.2.7	Back alignment and structure

>3cvr_A Invasion plasmid antigen; leucine rich repeat and alpha fold, ligase; 2.80A {Shigella flexneri 2A}	Back alignment and structure

>2xot_A Amphoterin-induced protein 1; cell adhesion, neuronal protein, neurite growth regulation; HET: NAG BMA; 2.00A {Mus musculus}	Back alignment and structure

>2v70_A SLIT-2, SLIT homolog 2 protein N-product; neurogenesis, glycoprotein, secreted, chemotaxis, LRR structural protein, differentiation; HET: NAG; 3.01A {Homo sapiens}	Back alignment and structure

>2v9t_B SLIT homolog 2 protein N-product; structural protein-receptor complex, developmental protein, domain, roundabout, chemotaxis, LRR domain; 1.70A {Homo sapiens} PDB: 2v9s_A	Back alignment and structure

>2e31_A FBS1, F-box only protein 2; ubiquitin, SCF, ubiquitin ligase, FBS1; 2.40A {Mus musculus} PDB: 2e32_A	Back alignment and structure

>4gt6_A Cell surface protein; leucine rich repeats, putative protein binding, extracellula protein, structural genomics; HET: MSE; 1.80A {Faecalibacterium prausnitzii a2-165}	Back alignment and structure

>2o6r_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 2.30A {Eptatretus burgeri}	Back alignment and structure

>4h09_A Hypothetical leucine rich repeat protein; two LRR_5 domains, PF13306 family, structural genomics, JOIN for structural genomics, JCSG; 2.50A {Eubacterium ventriosum}	Back alignment and structure

>2o6r_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 2.30A {Eptatretus burgeri}	Back alignment and structure

>3g39_A Variable lymphocyte receptor VLRB.2D; antibody, X-RAY, crystallography, immune system; 1.55A {Petromyzon marinus} PDB: 3g3a_A 3g3b_A 3twi_D	Back alignment and structure

>2r9u_A Variable lymphocyte receptor; adaptive immunity, VLR, leucine-rich repeat, LRR, system; 2.10A {Petromyzon marinus}	Back alignment and structure

>2wfh_A SLIT homolog 2 protein C-product; developmental protein, neurogenesis, splicing, glycoprotein, leucine-rich repeat, disulfide bond, differentiation; 1.80A {Homo sapiens}	Back alignment and structure

>3v7d_B Cell division control protein 4; WD 40 domain, phospho-peptide complex, E3 ubiquitin ligase, cell cycle, phospho binding protein, phosphorylation; HET: SEP; 2.31A {Saccharomyces cerevisiae} PDB: 1nex_B* 3mks_B*	Back alignment and structure

>4b8c_D Glucose-repressible alcohol dehydrogenase transcr effector; hydrolase-cell cycle complex; 3.41A {Saccharomyces cerevisiae S288C}	Back alignment and structure

>4h09_A Hypothetical leucine rich repeat protein; two LRR_5 domains, PF13306 family, structural genomics, JOIN for structural genomics, JCSG; 2.50A {Eubacterium ventriosum}	Back alignment and structure

>1p22_A F-BOX/WD-repeat protein 1A; ubiquitination, degradation, signaling protein; HET: SEP; 2.95A {Homo sapiens} SCOP: a.158.1.1 b.69.4.1	Back alignment and structure

>1w8a_A SLIT protein; signaling protein, secreted protein, AXON guidance, leucine-rich repeat glycoprotein, EGF-like domain, signal protein; 2.8A {Drosophila melanogaster} SCOP: c.10.2.7	Back alignment and structure

>2ovr_B FBW7, F-BOX/WD repeat protein 7, F-box PROT; WD40 domains, double phosphorylation, transcription-C complex; HET: TPO; 2.50A {Homo sapiens} SCOP: a.158.1.1 b.69.4.1 PDB: 2ovp_B* 2ovq_B*	Back alignment and structure

>3g39_A Variable lymphocyte receptor VLRB.2D; antibody, X-RAY, crystallography, immune system; 1.55A {Petromyzon marinus} PDB: 3g3a_A 3g3b_A 3twi_D	Back alignment and structure

>4b8c_D Glucose-repressible alcohol dehydrogenase transcr effector; hydrolase-cell cycle complex; 3.41A {Saccharomyces cerevisiae S288C}	Back alignment and structure

>2r9u_A Variable lymphocyte receptor; adaptive immunity, VLR, leucine-rich repeat, LRR, system; 2.10A {Petromyzon marinus}	Back alignment and structure

>3rw6_A Nuclear RNA export factor 1; retroviral constitutive transport element (CTE), RNA recogni motif (RRM); HET: GTP CCC; 2.30A {Homo sapiens} PDB: 3rw7_A 1koo_A 1koh_A 1ft8_A 1fo1_A	Back alignment and structure

>2ifg_A High affinity nerve growth factor receptor; TRK, TRKA, receptor-ligand complex transferase; HET: NAG NDG MAN BMA; 3.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 c.10.2.7	Back alignment and structure

>3rw6_A Nuclear RNA export factor 1; retroviral constitutive transport element (CTE), RNA recogni motif (RRM); HET: GTP CCC; 2.30A {Homo sapiens} PDB: 3rw7_A 1koo_A 1koh_A 1ft8_A 1fo1_A	Back alignment and structure

>2ifg_A High affinity nerve growth factor receptor; TRK, TRKA, receptor-ligand complex transferase; HET: NAG NDG MAN BMA; 3.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 c.10.2.7	Back alignment and structure

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

ID	Alignment Graph	Length	Definition	E-value
Query		467
d2astb2		284	c.10.1.3 (B:2136-2419) Cyclin A/CDK2-associated p1	1e-04
d2astb2		284	c.10.1.3 (B:2136-2419) Cyclin A/CDK2-associated p1	0.002

>d2astb2 c.10.1.3 (B:2136-2419) Cyclin A/CDK2-associated p19, Skp2 {Human (Homo sapiens) [TaxId: 9606]} Length = 284	Back information, alignment and structure


class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: Cyclin A/CDK2-associated p19, Skp2
domain: Cyclin A/CDK2-associated p19, Skp2
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 41.6 bits (96), Expect = 1e-04
 Identities = 41/202 (20%), Positives = 77/202 (38%), Gaps = 13/202 (6%)

Query: 239 ELSLKNCIISPGRGLACVLGKCRNLEKIHLDMCVGVRDSDIINMAQTSS--KLRSISLRV 296
            + L N +I     L  +L +C  L+ + L+    + D  +  +A+ S+  +L       
Sbjct: 50  HMDLSNSVIEVS-TLHGILSQCSKLQNLSLEGL-RLSDPIVNTLAKNSNLVRLNLSGCSG 107

Query: 297 PSDFSLPILMSNPLRLTDESLKALADNCRMLESVRISFSDGEFP-------SISSFTLDG 349
            S+F+L  L+S+  RL + +L    D       V ++                +    D 
Sbjct: 108 FSEFALQTLLSSCSRLDELNLSWCFDFTEKHVQVAVAHVSETITQLNLSGYRKNLQKSDL 167

Query: 350 ILTLIQKCPVRELSLDYVYSFNDVGMEALCSAHYLEILELARCQEISDEGLQLACQFPHL 409
              + +   +  L L       +   +     +YL+ L L+RC +I  E L    + P L
Sbjct: 168 STLVRRCPNLVHLDLSDSVMLKNDCFQEFFQLNYLQHLSLSRCYDIIPETLLELGEIPTL 227

Query: 410 SILRLRKCLGVTDDGLKPLVGS 431
             L++     V D  L+ L  +
Sbjct: 228 KTLQVFGI--VPDGTLQLLKEA 247

PyMOL of d2astb2

>d2astb2 c.10.1.3 (B:2136-2419) Cyclin A/CDK2-associated p19, Skp2 {Human (Homo sapiens) [TaxId: 9606]} Length = 284	Back information, alignment and structure

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Alignment Graph	Length	Definition	Probability
Query		467
d2astb2		284	Cyclin A/CDK2-associated p19, Skp2 {Human (Homo sa	99.92
d2astb2		284	Cyclin A/CDK2-associated p19, Skp2 {Human (Homo sa	99.91
d1z7xw1		460	Ribonuclease inhibitor {Human (Homo sapiens) [TaxI	99.84
d1z7xw1		460	Ribonuclease inhibitor {Human (Homo sapiens) [TaxI	99.78
d2ca6a1		344	Rna1p (RanGAP1), N-terminal domain {Fission yeast	99.55
d2ca6a1		344	Rna1p (RanGAP1), N-terminal domain {Fission yeast	99.5
d2omza2		384	Internalin A {Listeria monocytogenes [TaxId: 1639]	99.43
d2omza2		384	Internalin A {Listeria monocytogenes [TaxId: 1639]	99.25
d1fs1a1		41	Skp2 {Human (Homo sapiens) [TaxId: 9606]}	99.15
d1xkua_		305	Decorin {Cow (Bos taurus) [TaxId: 9913]}	98.98
d1h6ua2		227	Internalin H {Listeria monocytogenes [TaxId: 1639]	98.87
d1h6ua2		227	Internalin H {Listeria monocytogenes [TaxId: 1639]	98.85
d2omxa2		199	Internalin B {Listeria monocytogenes [TaxId: 1639]	98.76
d1ozna_		284	Reticulon 4 receptor (Nogo-66 receptor, Ngr) {Huma	98.76
d2omxa2		199	Internalin B {Listeria monocytogenes [TaxId: 1639]	98.76
d1h6ta2		210	Internalin B {Listeria monocytogenes [TaxId: 1639]	98.73
d1xkua_		305	Decorin {Cow (Bos taurus) [TaxId: 9913]}	98.73
d1pgva_		167	Tropomodulin C-terminal domain {nematode (Caenorha	98.71
d1pgva_		167	Tropomodulin C-terminal domain {nematode (Caenorha	98.71
d1io0a_		166	Tropomodulin C-terminal domain {Chicken (Gallus ga	98.7
d1h6ta2		210	Internalin B {Listeria monocytogenes [TaxId: 1639]	98.66
d1ozna_		284	Reticulon 4 receptor (Nogo-66 receptor, Ngr) {Huma	98.65
d1io0a_		166	Tropomodulin C-terminal domain {Chicken (Gallus ga	98.54
d1ogqa_		313	Polygalacturonase inhibiting protein PGIP {Kidney	98.49
d1p9ag_		266	von Willebrand factor binding domain of glycoprote	98.47
d2ovrb1		102	F-box/WD repeat-containing protein 7, FBXW7 {Human	98.42
d1nexb1		100	Cdc4 F-box and linker domains {Baker's yeast (Sacc	98.41
d1ogqa_		313	Polygalacturonase inhibiting protein PGIP {Kidney	98.41
d1a9na_		162	Splicesomal U2A' protein {Human (Homo sapiens) [Ta	98.3
d1a9na_		162	Splicesomal U2A' protein {Human (Homo sapiens) [Ta	98.3
d1p9ag_		266	von Willebrand factor binding domain of glycoprote	98.27
d1xwdc1		242	Follicle-stimulating hormone receptor {Human (Homo	98.08
d1xwdc1		242	Follicle-stimulating hormone receptor {Human (Homo	98.03
d1p22a1		118	F-box/WD-repeat protein 1 (beta-TRCP1) {Human (Hom	98.03
d1dcea3		124	Rab geranylgeranyltransferase alpha-subunit, C-ter	97.97
d1m9la_		198	Outer arm dynein light chain 1 {Green algae (Chlam	97.97
d1jl5a_		353	Leucine rich effector protein YopM {Yersinia pesti	97.92
d1dcea3		124	Rab geranylgeranyltransferase alpha-subunit, C-ter	97.9
d1w8aa_		192	Slit {Fruit fly (Drosophila melanogaster) [TaxId:	97.87
d1m9la_		198	Outer arm dynein light chain 1 {Green algae (Chlam	97.76
d1jl5a_		353	Leucine rich effector protein YopM {Yersinia pesti	97.26
d1w8aa_		192	Slit {Fruit fly (Drosophila melanogaster) [TaxId:	96.98
d2ifga3		156	High affinity nerve growth factor receptor, N-term	96.93
d2ifga3		156	High affinity nerve growth factor receptor, N-term	96.39
d1koha1		162	mRNA export factor tap {Human (Homo sapiens) [TaxI	96.24
d1koha1		162	mRNA export factor tap {Human (Homo sapiens) [TaxI	96.02

>d2astb2 c.10.1.3 (B:2136-2419) Cyclin A/CDK2-associated p19, Skp2 {Human (Homo sapiens) [TaxId: 9606]}	Back information, alignment and structure

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: Cyclin A/CDK2-associated p19, Skp2
domain: Cyclin A/CDK2-associated p19, Skp2
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.92  E-value=2.6e-24  Score=193.35  Aligned_cols=205  Identities=20%  Similarity=0.269  Sum_probs=182.0

Q ss_pred             CCCCcceeeccccCccCchhHHHHHhcCCCCcEEEcccCcccchhHHHHHHHhCCCCCeeeeccCCCCCccccccCCCCC
Q 012255          233 PCENMVELSLKNCIISPGRGLACVLGKCRNLEKIHLDMCVGVRDSDIINMAQTSSKLRSISLRVPSDFSLPILMSNPLRL  312 (467)
Q Consensus       233 ~~~~L~~L~l~~~~~~~~~~l~~l~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~  312 (467)
                      ...+|++|+++++. +++..+..++.+|++|++|.+++|. +++..+..+. .+++|++|++++|.            .+
T Consensus        44 ~~~~L~~LdLs~~~-i~~~~l~~l~~~c~~L~~L~L~~~~-l~~~~~~~l~-~~~~L~~L~Ls~c~------------~i  108 (284)
T d2astb2          44 SPFRVQHMDLSNSV-IEVSTLHGILSQCSKLQNLSLEGLR-LSDPIVNTLA-KNSNLVRLNLSGCS------------GF  108 (284)
T ss_dssp             CCBCCCEEECTTCE-ECHHHHHHHHTTBCCCSEEECTTCB-CCHHHHHHHT-TCTTCSEEECTTCB------------SC
T ss_pred             cCCCCCEEECCCCc-cCHHHHHHHHHhCCCcccccccccC-CCcHHHHHHh-cCCCCcCccccccc------------cc
Confidence            45689999999885 7778888889999999999999995 7777777665 68999999999987            79


Q ss_pred             CHHHHHHHHhcCCCCCeEEecccCCCCCccccccHHHHHHHH-HhCC-CcEeecccc-ccccHHHHHHHH-hCCCCCEEe
Q 012255          313 TDESLKALADNCRMLESVRISFSDGEFPSISSFTLDGILTLI-QKCP-VRELSLDYV-YSFNDVGMEALC-SAHYLEILE  388 (467)
Q Consensus       313 ~~~~l~~l~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~l~-~~~~-L~~L~l~~~-~~~~~~~~~~l~-~~~~L~~L~  388 (467)
                      ++.++..++.+||+|++|++++|       ..+++.++.... ..++ |+.|+++++ ..+++.++..+. .+|+|++|+
T Consensus       109 td~~l~~l~~~~~~L~~L~ls~c-------~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~i~~~~l~~l~~~~~~L~~L~  181 (284)
T d2astb2         109 SEFALQTLLSSCSRLDELNLSWC-------FDFTEKHVQVAVAHVSETITQLNLSGYRKNLQKSDLSTLVRRCPNLVHLD  181 (284)
T ss_dssp             CHHHHHHHHHHCTTCCEEECCCC-------TTCCHHHHHHHHHHSCTTCCEEECCSCGGGSCHHHHHHHHHHCTTCSEEE
T ss_pred             cccccchhhHHHHhccccccccc-------cccccccchhhhcccccccchhhhcccccccccccccccccccccccccc
Confidence            99999999999999999999994       788888876544 4566 999999986 468999988887 699999999


Q ss_pred             ecCCCCcCHHHHHHhcCCCCCCEEeecCCCCCCccchHhhhcCCCCCeeccCCCCCCCHHHHHHHHhhccccc
Q 012255          389 LARCQEISDEGLQLACQFPHLSILRLRKCLGVTDDGLKPLVGSHKLDLLAVEDCPQVSERGVQGAARSVSFRQ  461 (467)
Q Consensus       389 l~~c~~it~~~~~~l~~~~~L~~L~l~~c~~it~~~~~~l~~~~~L~~L~l~~c~~~~~~~~~~l~~~~~~~~  461 (467)
                      +++|..+++.++..+.++++|++|++++|..|++.++..+.++|+|+.|++.+|  +++.++..+++.++.++
T Consensus       182 L~~~~~itd~~~~~l~~~~~L~~L~L~~C~~i~~~~l~~L~~~~~L~~L~l~~~--~~d~~l~~l~~~lp~L~  252 (284)
T d2astb2         182 LSDSVMLKNDCFQEFFQLNYLQHLSLSRCYDIIPETLLELGEIPTLKTLQVFGI--VPDGTLQLLKEALPHLQ  252 (284)
T ss_dssp             CTTCTTCCGGGGGGGGGCTTCCEEECTTCTTCCGGGGGGGGGCTTCCEEECTTS--SCTTCHHHHHHHSTTSE
T ss_pred             cccccCCCchhhhhhcccCcCCEEECCCCCCCChHHHHHHhcCCCCCEEeeeCC--CCHHHHHHHHHhCcccc
Confidence            999999999999999999999999999999999999999999999999999999  79999999999888754

PyMOL of d2astb2

>d2astb2 c.10.1.3 (B:2136-2419) Cyclin A/CDK2-associated p19, Skp2 {Human (Homo sapiens) [TaxId: 9606]}	Back information, alignment and structure

>d1z7xw1 c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (Homo sapiens) [TaxId: 9606]}	Back information, alignment and structure

>d1z7xw1 c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (Homo sapiens) [TaxId: 9606]}	Back information, alignment and structure

>d2ca6a1 c.10.1.2 (A:2-345) Rna1p (RanGAP1), N-terminal domain {Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]}	Back information, alignment and structure

>d2ca6a1 c.10.1.2 (A:2-345) Rna1p (RanGAP1), N-terminal domain {Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]}	Back information, alignment and structure

>d2omza2 c.10.2.1 (A:33-416) Internalin A {Listeria monocytogenes [TaxId: 1639]}	Back information, alignment and structure

>d2omza2 c.10.2.1 (A:33-416) Internalin A {Listeria monocytogenes [TaxId: 1639]}	Back information, alignment and structure

>d1fs1a1 a.158.1.1 (A:109-149) Skp2 {Human (Homo sapiens) [TaxId: 9606]}	Back information, alignment and structure

>d1xkua_ c.10.2.7 (A:) Decorin {Cow (Bos taurus) [TaxId: 9913]}	Back information, alignment and structure

>d1h6ua2 c.10.2.1 (A:36-262) Internalin H {Listeria monocytogenes [TaxId: 1639]}	Back information, alignment and structure

>d1h6ua2 c.10.2.1 (A:36-262) Internalin H {Listeria monocytogenes [TaxId: 1639]}	Back information, alignment and structure

>d2omxa2 c.10.2.1 (A:37-235) Internalin B {Listeria monocytogenes [TaxId: 1639]}	Back information, alignment and structure

>d1ozna_ c.10.2.7 (A:) Reticulon 4 receptor (Nogo-66 receptor, Ngr) {Human (Homo sapiens) [TaxId: 9606]}	Back information, alignment and structure

>d2omxa2 c.10.2.1 (A:37-235) Internalin B {Listeria monocytogenes [TaxId: 1639]}	Back information, alignment and structure

>d1h6ta2 c.10.2.1 (A:31-240) Internalin B {Listeria monocytogenes [TaxId: 1639]}	Back information, alignment and structure

>d1xkua_ c.10.2.7 (A:) Decorin {Cow (Bos taurus) [TaxId: 9913]}	Back information, alignment and structure

>d1pgva_ c.10.1.1 (A:) Tropomodulin C-terminal domain {nematode (Caenorhabditis elegans) [TaxId: 6239]}	Back information, alignment and structure

>d1pgva_ c.10.1.1 (A:) Tropomodulin C-terminal domain {nematode (Caenorhabditis elegans) [TaxId: 6239]}	Back information, alignment and structure

>d1io0a_ c.10.1.1 (A:) Tropomodulin C-terminal domain {Chicken (Gallus gallus) [TaxId: 9031]}	Back information, alignment and structure

>d1h6ta2 c.10.2.1 (A:31-240) Internalin B {Listeria monocytogenes [TaxId: 1639]}	Back information, alignment and structure

>d1ozna_ c.10.2.7 (A:) Reticulon 4 receptor (Nogo-66 receptor, Ngr) {Human (Homo sapiens) [TaxId: 9606]}	Back information, alignment and structure

>d1io0a_ c.10.1.1 (A:) Tropomodulin C-terminal domain {Chicken (Gallus gallus) [TaxId: 9031]}	Back information, alignment and structure

>d1ogqa_ c.10.2.8 (A:) Polygalacturonase inhibiting protein PGIP {Kidney bean (Phaseolus vulgaris) [TaxId: 3885]}	Back information, alignment and structure

>d1p9ag_ c.10.2.7 (G:) von Willebrand factor binding domain of glycoprotein Ib alpha {Human (Homo sapiens) [TaxId: 9606]}	Back information, alignment and structure

>d2ovrb1 a.158.1.1 (B:2263-2364) F-box/WD repeat-containing protein 7, FBXW7 {Human (Homo sapiens) [TaxId: 9606]}	Back information, alignment and structure

>d1nexb1 a.158.1.1 (B:270-369) Cdc4 F-box and linker domains {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}	Back information, alignment and structure

>d1ogqa_ c.10.2.8 (A:) Polygalacturonase inhibiting protein PGIP {Kidney bean (Phaseolus vulgaris) [TaxId: 3885]}	Back information, alignment and structure

>d1a9na_ c.10.2.4 (A:) Splicesomal U2A' protein {Human (Homo sapiens) [TaxId: 9606]}	Back information, alignment and structure

>d1a9na_ c.10.2.4 (A:) Splicesomal U2A' protein {Human (Homo sapiens) [TaxId: 9606]}	Back information, alignment and structure

>d1p9ag_ c.10.2.7 (G:) von Willebrand factor binding domain of glycoprotein Ib alpha {Human (Homo sapiens) [TaxId: 9606]}	Back information, alignment and structure

>d1xwdc1 c.10.2.7 (C:18-259) Follicle-stimulating hormone receptor {Human (Homo sapiens) [TaxId: 9606]}	Back information, alignment and structure

>d1xwdc1 c.10.2.7 (C:18-259) Follicle-stimulating hormone receptor {Human (Homo sapiens) [TaxId: 9606]}	Back information, alignment and structure

>d1p22a1 a.158.1.1 (A:135-252) F-box/WD-repeat protein 1 (beta-TRCP1) {Human (Homo sapiens) [TaxId: 9606]}	Back information, alignment and structure

>d1dcea3 c.10.2.2 (A:444-567) Rab geranylgeranyltransferase alpha-subunit, C-terminal domain {Rat (Rattus norvegicus) [TaxId: 10116]}	Back information, alignment and structure

>d1m9la_ c.10.3.1 (A:) Outer arm dynein light chain 1 {Green algae (Chlamydomonas reinhardtii) [TaxId: 3055]}	Back information, alignment and structure

>d1jl5a_ c.10.2.6 (A:) Leucine rich effector protein YopM {Yersinia pestis [TaxId: 632]}	Back information, alignment and structure

>d1dcea3 c.10.2.2 (A:444-567) Rab geranylgeranyltransferase alpha-subunit, C-terminal domain {Rat (Rattus norvegicus) [TaxId: 10116]}	Back information, alignment and structure

>d1w8aa_ c.10.2.7 (A:) Slit {Fruit fly (Drosophila melanogaster) [TaxId: 7227]}	Back information, alignment and structure

>d1m9la_ c.10.3.1 (A:) Outer arm dynein light chain 1 {Green algae (Chlamydomonas reinhardtii) [TaxId: 3055]}	Back information, alignment and structure

>d1jl5a_ c.10.2.6 (A:) Leucine rich effector protein YopM {Yersinia pestis [TaxId: 632]}	Back information, alignment and structure

>d1w8aa_ c.10.2.7 (A:) Slit {Fruit fly (Drosophila melanogaster) [TaxId: 7227]}	Back information, alignment and structure

>d2ifga3 c.10.2.7 (A:36-191) High affinity nerve growth factor receptor, N-terminal domain {Human (Homo sapiens) [TaxId: 9606]}	Back information, alignment and structure

>d2ifga3 c.10.2.7 (A:36-191) High affinity nerve growth factor receptor, N-terminal domain {Human (Homo sapiens) [TaxId: 9606]}	Back information, alignment and structure

>d1koha1 c.10.2.3 (A:201-362) mRNA export factor tap {Human (Homo sapiens) [TaxId: 9606]}	Back information, alignment and structure

>d1koha1 c.10.2.3 (A:201-362) mRNA export factor tap {Human (Homo sapiens) [TaxId: 9606]}	Back information, alignment and structure